openSNP/snpr

##fileformat=VCFv4.1
##CombineVariants="analysis_type=CombineVariants input_file=[] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/creph/gspipe/data/opt/ref_genome/gspipe/0.1/genomes/G1K.37/G1K.37.nt.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=null help=false variant=[(RodBinding name=variant source=LF9477_vars_v1.cs.INDEL.vcf), (RodBinding name=variant2 source=LF9477_vars_v1.cs.SNP.vcf)] out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub genotypemergeoption=PRIORITIZE filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED rod_priority_list=variant2,variant printComplexMerges=false filteredAreUncalled=false minimalVCF=false setKey=null assumeIdenticalSamples=true minimumN=1 mergeInfoWithMaxAC=false filter_mismatching_base_and_quals=false"
##FILTER=<ID=FSFilter200,Description="FS > 200.0">
##FILTER=<ID=FSFilter60,Description="FS > 60.0">
##FILTER=<ID=HaplotypeScoreFilter13,Description="HaplotypeScore > 13.0">
##FILTER=<ID=InbreedingCoeff0_8,Description="InbreedingCoeff < -0.8">
##FILTER=<ID=MQFilter40,Description="MQ < 40.0">
##FILTER=<ID=MQRankSumFilter12_5,Description="MQRankSum < -12.5">
##FILTER=<ID=QDFilter2,Description="QD < 2.0">
##FILTER=<ID=ReadPosRankSumFilter20,Description="ReadPosRankSum < -20.0">
##FILTER=<ID=ReadPosRankSumFilter8,Description="ReadPosRankSum < -8.0">
##FILTER=<ID=SnpCluster,Description="SNPs found in clusters">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=.,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##INFO=<ID=AB,Number=1,Type=Float,Description="Allele Balance for hets (ref/(ref+alt))">
##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HRun,Number=1,Type=Integer,Description="Largest Contiguous Homopolymer Run of Variant Allele In Either Direction">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=IndelType,Number=1,Type=String,Description="Indel type description">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SNPEFF_AMINO_ACID_CHANGE,Number=1,Type=String,Description="Old/New amino acid for the highest-impact effect resulting from the current variant (in HGVS style)">
##INFO=<ID=SNPEFF_CODON_CHANGE,Number=1,Type=String,Description="Old/New codon for the highest-impact effect resulting from the current variant">
##INFO=<ID=SNPEFF_EFFECT,Number=1,Type=String,Description="The highest-impact effect resulting from the current variant (or one of the highest-impact effects, if there is a tie)">
##INFO=<ID=SNPEFF_EXON_ID,Number=1,Type=String,Description="Exon ID for the highest-impact effect resulting from the current variant">
##INFO=<ID=SNPEFF_FUNCTIONAL_CLASS,Number=1,Type=String,Description="Functional class of the highest-impact effect resulting from the current variant: [NONE, SILENT, MISSENSE, NONSENSE]">
##INFO=<ID=SNPEFF_GENE_BIOTYPE,Number=1,Type=String,Description="Gene biotype for the highest-impact effect resulting from the current variant">
##INFO=<ID=SNPEFF_GENE_NAME,Number=1,Type=String,Description="Gene name for the highest-impact effect resulting from the current variant">
##INFO=<ID=SNPEFF_IMPACT,Number=1,Type=String,Description="Impact of the highest-impact effect resulting from the current variant [MODIFIER, LOW, MODERATE, HIGH]">
##INFO=<ID=SNPEFF_TRANSCRIPT_ID,Number=1,Type=String,Description="Transcript ID for the highest-impact effect resulting from the current variant">
##OriginalSnpEffCmd="SnpEff eff GRCh37.64 -config /creph/gspipe/data/opt/app/snpEff/2.0.5/snpEff.config -onlyCoding true -o vcf -i vcf LF9477_vars.cs.vcf "
##OriginalSnpEffVersion="2.0.5 (build 2011-12-24), by Pablo Cingolani"
##SelectVariants="analysis_type=SelectVariants input_file=[] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/creph/gspipe/data/opt/ref_genome/gspipe/0.1/genomes/G1K.37/G1K.37.nt.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=null help=false variant=(RodBinding name=variant source=LF9477_vars_snpeff.cs.vcf.gz) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] select_expressions=[] excludeNonVariants=false excludeFiltered=false restrictAllelesTo=ALL keepOriginalAC=false mendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_number=0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[SNP] keepIDs=null outMVFile=null filter_mismatching_base_and_quals=false"
##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[./LF9477_recalaln.cs.bam] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=[/creph/gspipe/data/opt/platform/agilent/50Mb/targets_merged_250.bed] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/creph/gspipe/data/opt/ref_genome/gspipe/0.1/genomes/G1K.37/G1K.37.nt.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=BOTH p_nonref_model=EXACT heterozygosity=0.0010 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_CONFIDENT_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.05 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name=dbsnp source=/creph/gspipe/data/opt/variant/dbSNP/b135/dbSNP.b135.vcf.gz) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null annotation=[FisherStrand, DepthOfCoverage, BaseQualityRankSumTest, ChromosomeCounts, IndelType, SpanningDeletions, AlleleBalance, MappingQualityZero, HaplotypeScore, QualByDepth, HomopolymerRun, MappingQualityRankSumTest, ReadPosRankSumTest, BaseQualityRankSumTest] excludeAnnotation=[] filter_mismatching_base_and_quals=false"
##VariantAnnotator="analysis_type=VariantAnnotator input_file=[] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/creph/gspipe/data/opt/ref_genome/gspipe/0.1/genomes/G1K.37/G1K.37.nt.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=null help=false variant=(RodBinding name=variant source=LF9477_vars.cs.vcf) snpEffFile=(RodBinding name=variant2 source=-) dbsnp=(RodBinding name= source=UNBOUND) comp=[] resource=[] out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub annotation=[SnpEff] excludeAnnotation=[] group=[] expression=[] useAllAnnotations=false list=false vcfContainsOnlyIndels=false MendelViolationGenotypeQualityThreshold=0.0 requireStrictAlleleMatch=false filter_mismatching_base_and_quals=false"
##VariantFiltration="analysis_type=VariantFiltration input_file=[] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/creph/gspipe/data/opt/ref_genome/gspipe/0.1/genomes/G1K.37/G1K.37.nt.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=null help=false variant=(RodBinding name=variant source=SNP.selected.vcf) mask=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub filterExpression=[QD < 2.0, MQ < 40.0, FS > 60.0, HaplotypeScore > 13.0, MQRankSum < -12.5, ReadPosRankSum < -8.0] filterName=[QDFilter2, MQFilter40, FSFilter60, HaplotypeScoreFilter13, MQRankSumFilter12_5, ReadPosRankSumFilter8] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask missingValuesInExpressionsShouldEvaluateAsFailing=false filter_mismatching_base_and_quals=false"
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##reference=file:///creph/gspipe/data/opt/ref_genome/gspipe/0.1/genomes/G1K.37/G1K.37.nt.fasta
##source=SelectVariants
#CHROM    POS    ID    REF    ALT    QUAL    FILTER    INFO    FORMAT    LF9477
1    14907    rs79585140    A    G    317.34    MQFilter40    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.052;DB;DP=54;Dels=0.0;FS=3.637;HRun=1;HaplotypeScore=1.86;MQ=27.49;MQ0=14;MQRankSum=0.137;QD=5.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DDX11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450305    GT:AD:DP:GQ:PL    0/1:32,21:54:99:347,0,514
1    14930    rs75454623    A    G    351.37    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.755;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.2196;MQ=31.7;MQ0=5;MQRankSum=-0.427;QD=5.96;ReadPosRankSum=-0.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DDX11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450305    GT:AD:DP:GQ:PL    0/1:36,23:59:99:381,0,680
1    17512    .    C    G    199.46    MQFilter40    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.863;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=36.5;MQ0=3;MQRankSum=-1.425;QD=5.11;ReadPosRankSum=-0.804;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DDX11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450305    GT:AD:DP:GQ:PL    0/1:30,9:39:99:229,0,869
1    17538    .    C    A    146.35    MQFilter40    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.629;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.01;MQ0=15;MQRankSum=0.71;QD=2.93;ReadPosRankSum=0.832;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DDX11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450305    GT:AD:DP:GQ:PL    0/1:40,10:50:99:176,0,752
1    63735    .    CCTA    C    176.49    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=6;FS=0.0;HRun=0;HaplotypeScore=24.4376;IndelType=D;MQ=23.59;MQ0=0;MQRankSum=0.736;QD=17.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534990    GT:AD:DP:GQ:PL    0/1:3,7:6:50:216,0,50
1    69511    rs75062661    A    G    1578.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.43;MQ0=18;QD=15.18;SNPEFF_AMINO_ACID_CHANGE=T141A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_69091_70008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4F5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335137    GT:AD:DP:GQ:PL    1/1:0,104:104:99:1612,168,0
1    753269    rs61770172    C    G    536.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.88;MQ0=18;QD=13.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326734    GT:AD:DP:GQ:PL    1/1:0,40:40:51.11:570,51,0
1    753405    rs61770173    C    A    203.64    MQFilter40    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=2.916;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.34;MQ0=3;MQRankSum=-3.837;QD=5.99;ReadPosRankSum=0.197;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326734    GT:AD:DP:GQ:PL    0/1:17,16:34:99:234,0,489
1    753425    rs3131970    T    C    179.98    MQFilter40    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.416;DB;DP=29;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=38.05;MQ0=4;MQRankSum=-3.416;QD=6.21;ReadPosRankSum=0.092;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326734    GT:AD:DP:GQ:PL    0/1:13,16:29:99:210,0,374
1    753474    rs2073814    C    G    127.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=40.5;MQ0=2;MQRankSum=-2.281;QD=7.94;ReadPosRankSum=-0.555;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326734    GT:AD:DP:GQ:PL    0/1:8,8:16:99:157,0,218
1    753541    rs2073813    G    A    79.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=19.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326734    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:109,0,28
1    808631    rs11240779    G    A    521.23    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=4.01;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.35;MQ0=0;MQRankSum=0.182;QD=14.48;ReadPosRankSum=-1.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL669831.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408219    GT:AD:DP:GQ:PL    0/1:19,17:36:99:551,0,482
1    808922    rs6594027    G    A    6076.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=198;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6975;MQ=40.27;MQ0=10;QD=30.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL669831.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408219    GT:AD:DP:GQ:PL    1/1:0,197:198:99:6077,484,0
1    808928    rs11240780    C    T    2175.48    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.19;DB;DP=194;Dels=0.0;FS=0.554;HRun=0;HaplotypeScore=4.6444;MQ=40.98;MQ0=8;MQRankSum=0.44;QD=11.21;ReadPosRankSum=-0.032;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL669831.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408219    GT:AD:DP:GQ:PL    0/1:108,85:194:99:2205,0,2817
1    866319    rs9988021    G    A    412.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=25.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342066    GT:AD:DP:GQ:PL    1/1:0,16:16:33.11:446,33,0
1    866511    .    C    CCCCT    345.48    PASS    AC=2;AF=1.00;AN=2;DP=10;FS=0.0;HRun=0;HaplotypeScore=39.4729;IndelType=I;MQ=57.52;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342066    GT:AD:DP:GQ:PL    1/1:3,7:10:18.06:387,18,0
1    870903    rs13303094    T    C    135.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342066    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
1    871334    rs4072383    G    T    106.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=17.76;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437963    GT:AD:DP:GQ:PL    0/1:2,4:6:50.63:137,0,51
1    874950    rs6143081    T    TCCCTGGAGGACC    1802.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=89.026;IndelType=I;MQ=36.95;MQ0=0;QD=138.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327044    GT:AD:DP:GQ:PL    1/1:5,7:13:36.12:1845,36,0
1    876499    rs4372192    A    G    79.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327044    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
1    877715    rs6605066    C    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327044    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    877831    rs6672356    T    C    73.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.5;SNPEFF_AMINO_ACID_CHANGE=W343R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_877790_877868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342066    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:106,9,0
1    879676    rs6605067    G    A    115.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496938    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
1    879687    rs2839    T    C    108.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496938    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:141,12,0
1    880238    rs3748592    A    G    498.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496938    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:532,39,0
1    881627    rs2272757    G    A    301.54    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.111;DB;DP=29;Dels=0.0;FS=5.636;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.199;QD=10.4;ReadPosRankSum=0.288;SNPEFF_AMINO_ACID_CHANGE=L615;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_881553_881666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327044    GT:AD:DP:GQ:PL    0/1:17,12:29:99:332,0,549
1    882033    rs2272756    G    A    100.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=1.495;QD=14.38;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342066    GT:AD:DP:GQ:PL    0/1:2,5:7:63.71:131,0,64
1    883625    rs4970378    A    G    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342066    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
1    884092    .    A    G    34.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DP=7;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=3.9964;MQ=61.23;MQ0=0;MQRankSum=-0.72;QD=4.99;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342066    GT:AD:DP:GQ:PL    0/1:4,2:7:64.91:65,0,106
1    887560    rs3748595    A    C    401.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487214    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:434,33,0
1    887801    rs3828047    A    G    672.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_AMINO_ACID_CHANGE=T394;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_887792_887980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327044    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:706,51,0
1    888639    rs3748596    T    C    766.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.94;MQ0=0;QD=31.93;SNPEFF_AMINO_ACID_CHANGE=E306;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_888555_888668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327044    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:799,60,0
1    888659    rs3748597    T    C    609.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.52;MQ0=0;QD=33.84;SNPEFF_AMINO_ACID_CHANGE=I300V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_888555_888668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327044    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:642,48,0
1    889158    rs56262069    G    C    386.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469563    GT:AD:DP:GQ:PL    1/1:0,15:15:42.05:419,42,0
1    889159    rs13302945    A    C    386.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469563    GT:AD:DP:GQ:PL    1/1:0,15:15:42.05:419,42,0
1    892745    rs13303227    G    A    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469563    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    894573    rs13303010    G    A    361.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=25.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327044    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:394,30,0
1    897325    rs4970441    G    C    2332.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.73;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=A203;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_897206_897427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338591    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2365,181,0
1    897564    rs13303229    T    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338591    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
1    898323    rs6605071    T    C    123.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463212    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
1    900205    rs4970436    T    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463212    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
1    900505    rs28705211    G    C    325.18    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.758;QD=11.21;ReadPosRankSum=-0.363;SNPEFF_AMINO_ACID_CHANGE=V497;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_900343_901094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455747    GT:AD:DP:GQ:PL    0/1:14,15:29:99:355,0,277
1    909073    rs3892467    C    T    344.46    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.724;DB;DP=25;Dels=0.0;FS=2.187;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=13.78;ReadPosRankSum=1.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341290    GT:AD:DP:GQ:PL    0/1:14,11:25:99:374,0,490
1    909238    rs3829740    G    C    190.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=21;Dels=0.0;FS=4.867;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=9.09;ReadPosRankSum=1.109;SNPEFF_AMINO_ACID_CHANGE=R452P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_909213_909431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379407    GT:AD:DP:GQ:PL    0/1:14,7:21:99:221,0,343
1    909419    rs28548431    C    T    106.12    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.16;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=D512;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_909213_909431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379407    GT:AD:DP:GQ:PL    0/1:3,4:7:47.41:136,0,47
1    909555    rs2340594    A    G    406.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341290    GT:AD:DP:GQ:PL    1/1:0,14:14:42.04:440,42,0
1    909768    rs2340593    A    G    1996.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341290    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2030,153,0
1    914852    rs13303368    G    C    32.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.06;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Q406E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_914261_916037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf170;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341290    GT:AD:DP:GQ:PL    0/1:2,2:4:62.22:62,0,69
1    914876    rs13302983    T    C    105.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.42;SNPEFF_AMINO_ACID_CHANGE=S398G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_914261_916037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf170;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341290    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:138,12,0
1    914940    rs13303033    T    C    42.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.57;ReadPosRankSum=1.026;SNPEFF_AMINO_ACID_CHANGE=A376;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_914261_916037;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf170;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341290    GT:AD:DP:GQ:PL    0/1:2,3:5:35.74:73,0,36
1    915227    rs13303355    A    G    1221.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.32;MQ0=0;QD=35.92;SNPEFF_AMINO_ACID_CHANGE=L281;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_914261_916037;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf170;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341290    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1254,99,0
1    916834    rs6694632    G    A    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341290    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    935222    rs2298214    C    A    60.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=53.95;MQ0=0;MQRankSum=-0.922;QD=7.62;ReadPosRankSum=-2.017;SNPEFF_AMINO_ACID_CHANGE=R44S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_935072_935552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HES4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428771    GT:AD:DP:GQ:PL    0/1:4,4:8:90.95:91,0,136
1    948692    rs2341365    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379389    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    948846    rs3841266    T    TA    670.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=108.8997;IndelType=I;MQ=61.88;MQ0=0;QD=39.44;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_948803_948956;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379389    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:712,48,0
1    948870    rs4615788    C    G    552.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.6;MQ0=0;QD=30.68;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_948803_948956;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379389    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:585,51,0
1    948921    rs15842    T    C    1167.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.29;MQ0=0;QD=31.56;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_948803_948956;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379389    GT:AD:DP:GQ:PL    1/1:0,37:37:93.27:1201,93,0
1    949235    rs2465124    G    A    169.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379389    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
1    949608    rs1921    G    A    530.67    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.19;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.761;QD=14.74;ReadPosRankSum=1.584;SNPEFF_AMINO_ACID_CHANGE=S83N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_949364_949920;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379389    GT:AD:DP:GQ:PL    0/1:17,19:36:99:561,0,508
1    949654    rs8997    A    G    977.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=V98;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_949364_949920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379389    GT:AD:DP:GQ:PL    1/1:0,28:28:81.23:1011,81,0
1    949925    rs2799070    C    T    338.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379389    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:371,27,0
1    957898    rs2799064    G    T    196.14    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=12.26;ReadPosRankSum=-1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379370    GT:AD:DP:GQ:PL    0/1:9,7:16:99:226,0,324
1    970765    .    C    T    432.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.415;DP=27;Dels=0.0;FS=4.374;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.732;QD=16.01;ReadPosRankSum=-0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379370    GT:AD:DP:GQ:PL    0/1:12,15:27:99:462,0,396
1    977203    rs3121552    G    C    79.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469403    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
1    977330    rs2799066    T    C    284.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469403    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:318,24,0
1    977570    rs2710876    G    A    448.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469403    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:481,36,0
1    980460    rs3128097    G    A    453.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469403    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:487,39,0
1    981087    rs3128098    A    G    1285.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=30.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469403    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1319,108,0
1    981931    rs2465128    A    G    202    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_AMINO_ACID_CHANGE=S1022;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_981777_982115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379370    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:235,21,0
1    982444    rs3128099    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479707    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    982462    rs3128100    T    C    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479707    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    982513    rs3128101    T    C    35.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479707    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
1    982941    rs3128102    T    C    2373.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479707    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2406,187,0
1    982994    rs10267    T    C    2158.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=29.57;SNPEFF_AMINO_ACID_CHANGE=F1186;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_982953_983067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379370    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2191,174,0
1    985266    rs2275813    C    T    426.37    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.15;QD=18.54;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466223    GT:AD:DP:GQ:PL    0/1:8,15:23:99:456,0,227
1    985449    rs56255212    G    A    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=7.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466223    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:67,6,0
1    986443    rs2710887    C    T    437.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466223    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:470,36,0
1    987200    rs9803031    C    T    520.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466223    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:554,42,0
1    998395    rs7526076    A    G    124.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-465B22.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394517    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
1    998582    rs3813194    G    C    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.84;ReadPosRankSum=-0.736;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-465B22.3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000456409    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
1    1018021    rs61766325    G    A    41.49    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.3;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379319    GT:AD:DP:GQ:PL    0/1:3,2:5:60.40:71,0,60
1    1021415    rs3737728    A    G    210.32    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.81;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=0.347;QD=10.02;ReadPosRankSum=-1.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427787    GT:AD:DP:GQ:PL    0/1:13,8:21:99:240,0,382
1    1103542    rs7518873    T    C    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR200A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384875    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    1158631    rs6603781    A    G    917.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.9;MQ0=0;QD=24.14;SNPEFF_AMINO_ACID_CHANGE=D190;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1158624_1158737;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263741    GT:AD:DP:GQ:PL    1/1:1,37:38:78.21:950,78,0
1    1159517    rs6702268    T    C    38.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459994    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
1    1229680    rs2477781    G    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    1235416    rs147197474    G    A    237.52    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.324;DB;DP=15;Dels=0.0;FS=2.158;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.83;ReadPosRankSum=-0.652;SNPEFF_AMINO_ACID_CHANGE=F158;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1235353_1235448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353662    GT:AD:DP:GQ:PL    0/1:7,8:15:99:268,0,206
1    1246004    rs2296474    A    G    4208.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPSF3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294579    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4208,319,0
1    1248090    .    G    A    277.95    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DP=29;Dels=0.0;FS=6.219;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=9.58;ReadPosRankSum=0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPSF3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430786    GT:AD:DP:GQ:PL    0/1:17,12:29:99:308,0,480
1    1249187    rs12142199    G    A    1626.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_AMINO_ACID_CHANGE=F187;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1249112_1249301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPSF3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294579    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1660,123,0
1    1254136    rs4970432    G    A    426.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPSF3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490853    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:459,33,0
1    1254436    rs1886773    A    G    331.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=27.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPSF3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490853    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:364,30,0
1    1254443    rs1886772    G    A    399.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPSF3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490853    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:433,33,0
1    1254841    rs10907179    C    G    1236.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=28.77;SNPEFF_AMINO_ACID_CHANGE=G100;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1254713_1254904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPSF3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294579    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1270,105,0
1    1262591    rs2296472    C    T    1255.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLTPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343938    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1288,102,0
1    1262966    rs307349    C    T    408.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=R156;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1262621_1264277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLTPD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343938    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:442,36,0
1    1263144    rs307350    G    A    1948.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLTPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488011    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1982,150,0
1    1263362    rs4970433    G    A    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLTPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488011    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    1263457    rs307351    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLTPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464957    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
1    1268847    rs307378    T    G    959.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;QD=31.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263743    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:992,75,0
1    1269554    rs307377    T    C    166.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=C757R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1268886_1270686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339381    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
1    1273278    rs307370    A    G    122.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.2;MQ0=0;QD=24.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472445    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:155,15,0
1    1274242    rs307369    A    G    41.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472445    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
1    1275264    .    A    ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG    852.04    PASS    AC=2;AF=1.00;AN=2;DP=21;FS=0.0;HRun=0;HaplotypeScore=416.186;IndelType=I;MQ=55.41;MQ0=0;QD=40.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472445    GT:AD:DP:GQ:PL    1/1:5,8:21:42.03:894,42,0
1    1276973    .    G    GACAC    1697.72    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=70.1253;IndelType=I;MQ=54.2;MQ0=0;QD=77.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472445    GT:AD:DP:GQ:PL    1/1:2,19:22:66.23:1740,66,0
1    1277533    rs307362    T    C    129.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.54;SNPEFF_AMINO_ACID_CHANGE=P122;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1277433_1277536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345100    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:162,12,0
1    1278237    rs307361    T    C    186.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263743    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:219,18,0
1    1284490    rs150789461    G    A    121.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=13.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MXRA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309212    GT:AD:DP:GQ:PL    1/1:2,7:9:12.04:154,12,0
1    1289367    rs35062587    CTG    C    1360.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=100.7718;IndelType=D;MQ=57.67;MQ0=1;QD=43.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MXRA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460473    GT:AD:DP:GQ:PL    1/1:0,31:29:87.29:1402,87,0
1    1289911    rs4970365    G    A    191.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MXRA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460473    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:224,18,0
1    1293764    rs34841888    G    C    161.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MXRA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309212    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:194,15,0
1    1296691    rs2765025    C    G    1190.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MXRA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309212    GT:AD:DP:GQ:PL    1/1:0,35:36:93.30:1224,93,0
1    1296818    rs2765024    C    G    167.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MXRA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309212    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
1    1308982    rs2765015    A    G    34.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321751    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
1    1323078    rs12729599    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=8.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408918    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:75,6,0
1    1323143    rs141100746    CCT    C    477.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=50.4954;IndelType=D;MQ=60.98;MQ0=0;QD=43.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408918    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:519,33,0
1    1387667    rs1781144    C    G    680.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378785    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:713,57,0
1    1395983    rs2801372    T    C    321.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475091    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:355,27,0
1    1417696    rs819970    C    G    38.30    QDFilter2    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.09;MQ0=1;MQRankSum=-3.693;QD=1.74;ReadPosRankSum=0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308647    GT:AD:DP:GQ:PL    0/1:14,8:22:68.30:68,0,448
1    1423225    .    CCT    C    1404.94    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=6.753;DP=103;FS=20.41;HRun=0;HaplotypeScore=535.0083;IndelType=D;MQ=49.6;MQ0=0;MQRankSum=0.513;QD=13.51;ReadPosRankSum=1.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378736    GT:AD:DP:GQ:PL    0/1:57,47:103:99:1444,0,2058
1    1458073    rs3118507    A    G    66.44    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.39;MQ0=0;MQRankSum=-1.466;QD=5.11;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439513    GT:AD:DP:GQ:PL    0/1:9,4:13:96.44:96,0,333
1    1469546    rs3128344    G    A    273.33    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=55.58;MQ0=0;MQRankSum=-0.304;QD=13.67;ReadPosRankSum=2.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400830    GT:AD:DP:GQ:PL    0/1:9,11:20:99:303,0,254
1    1479057    rs61777888    A    T    104.62    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=50.65;MQ0=0;MQRankSum=-1.12;QD=3.49;ReadPosRankSum=-2.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSU72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378725    GT:AD:DP:GQ:PL    0/1:20,8:30:99:135,0,493
1    1479105    rs5772046    C    CCT    722.14    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.252;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=115.5248;IndelType=I;MQ=55.01;MQ0=0;MQRankSum=2.027;QD=25.79;ReadPosRankSum=-0.596;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSU72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378725    GT:AD:DP:GQ:PL    0/1:11,17:26:99:761,0,316
1    1479333    rs7533    A    G    559.96    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.852;DB;DP=46;Dels=0.0;FS=6.474;HRun=2;HaplotypeScore=0.5784;MQ=59.5;MQ0=0;MQRankSum=-0.662;QD=12.17;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=P133;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1479249_1479367;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSU72;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291386    GT:AD:DP:GQ:PL    0/1:25,21:46:99:590,0,783
1    1509825    rs6666293    A    G    111.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=11.2;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSU72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291386    GT:AD:DP:GQ:PL    0/1:4,6:10:99:142,0,104
1    1551927    rs7418389    T    C    197.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.23;SNPEFF_AMINO_ACID_CHANGE=F15L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1551888_1551994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357210    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:230,18,0
1    1558792    rs12755088    T    C    207.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_1_1558769_1559079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIB2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000504599    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:240,18,0
1    1562895    rs12735861    C    T    213.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.751;QD=23.71;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467597    GT:AD:DP:GQ:PL    1/1:1,8:9:21.05:246,21,0
1    1564712    rs61774907    G    T    77.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464570    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:109,9,0
1    1571640    .    G    T    207.90    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=18.29;MQ0=13;MQRankSum=0.747;QD=9.9;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356026    GT:AD:DP:GQ:PL    1/1:10,11:21:21.06:241,21,0
1    1574019    rs9442412    A    G    499.83    MQFilter40    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=3.863;DB;DP=40;Dels=0.0;FS=2.896;HRun=0;HaplotypeScore=0.0;MQ=26.63;MQ0=6;MQRankSum=-1.099;QD=12.5;ReadPosRankSum=1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356026    GT:AD:DP:GQ:PL    0/1:17,23:40:99:530,0,297
1    1574076    rs9442413    G    A    144.94    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.42;MQ0=0;MQRankSum=1.2;QD=11.15;ReadPosRankSum=1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356026    GT:AD:DP:GQ:PL    0/1:6,7:13:99:175,0,173
1    1575616    rs80012316    T    C    253.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=21.9;MQ0=3;QD=15.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490017    GT:AD:DP:GQ:PL    1/1:0,16:16:30.03:286,30,0
1    1575836    rs72468213    C    G    880.21    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=5.624;DB;DP=121;Dels=0.0;FS=1.991;HRun=1;HaplotypeScore=0.0;MQ=27.23;MQ0=7;MQRankSum=-1.162;QD=7.27;ReadPosRankSum=1.203;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    0/1:72,49:121:99:910,0,1229
1    1576636    rs3765908    G    A    42.11    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=35.06;MQ0=0;MQRankSum=0.406;QD=7.02;ReadPosRankSum=1.537;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    0/1:3,3:6:72.11:72,0,101
1    1580738    rs149767621    T    A    540.10    MQFilter40    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.352;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.61;MQ0=3;MQRankSum=0.07;QD=10.19;ReadPosRankSum=0.831;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    0/1:26,27:53:99:570,0,491
1    1581096    rs145723946    C    T    2788.42    MQFilter40    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.802;DB;DP=250;DS;Dels=0.0;FS=3.333;HRun=2;HaplotypeScore=6.0759;MQ=37.82;MQ0=4;MQRankSum=0.759;QD=11.15;ReadPosRankSum=0.826;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    0/1:127,123:250:99:2818,0,2850
1    1581558    rs117719933    C    T    501.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.05;MQ0=6;QD=19.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    1/1:0,26:26:48.13:535,48,0
1    1581713    rs76922129    A    C    908.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=49.65;MQ0=4;QD=27.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    1/1:0,26:33:75.22:942,75,0
1    1581759    rs61774915    G    A    210.01    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=3.025;DB;DP=67;Dels=0.0;FS=10.144;HRun=0;HaplotypeScore=2.9329;MQ=48.84;MQ0=6;MQRankSum=-5.747;QD=3.13;ReadPosRankSum=1.287;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    0/1:45,22:67:99:240,0,1353
1    1581926    rs61774917    G    T    418.55    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=50;Dels=0.0;FS=1.66;HRun=2;HaplotypeScore=0.0;MQ=47.54;MQ0=2;MQRankSum=-3.858;QD=8.37;ReadPosRankSum=-0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    0/1:28,22:50:99:449,0,952
1    1582106    rs79942991    T    C    2477.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.66;MQ0=14;QD=22.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    1/1:0,108:108:99:2510,222,0
1    1582202    rs61774918    C    T    1403.03    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.459;DB;DP=135;Dels=0.0;FS=1.454;HRun=0;HaplotypeScore=0.9894;MQ=43.51;MQ0=5;MQRankSum=0.04;QD=10.39;ReadPosRankSum=-0.253;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    0/1:76,59:135:99:1433,0,2061
1    1585597    rs7531938    A    G    267.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    1/1:0,11:11:21.07:300,21,0
1    1585642    rs3936009    G    T    247.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
1    1586752    rs11486023    T    C    1491.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.72;MQ0=0;QD=33.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL691432.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317673    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1524,114,0
1    1588670    rs61774958    G    A    771.66    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.634;DB;DP=170;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=1.8665;MQ=49.71;MQ0=7;MQRankSum=-5.929;QD=4.54;ReadPosRankSum=3.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234800    GT:AD:DP:GQ:PL    0/1:121,48:170:99:802,0,3913
1    1588717    rs61774959    G    A    416.06    PASS    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=208;Dels=0.0;FS=5.992;HRun=0;HaplotypeScore=1.3123;MQ=46.15;MQ0=12;MQRankSum=-4.927;QD=2.0;ReadPosRankSum=-4.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234800    GT:AD:DP:GQ:PL    0/1:166,42:208:99:446,0,5088
1    1588744    rs79724854    AGCG    A    337.74    QDFilter2    AB=0.916;AC=1;AF=0.50;AN=2;BaseQRankSum=6.958;DB;DP=188;FS=52.439;HRun=0;HaplotypeScore=843.6636;IndelType=D;MQ=46.88;MQ0=7;MQRankSum=-5.455;QD=1.71;ReadPosRankSum=1.487;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234800    GT:AD:DP:GQ:PL    0/1:179,18:188:99:377,0,11904
1    1599812    rs12729295    C    T    658.30    MQFilter40    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.308;DB;DP=122;Dels=0.0;FS=5.036;HRun=0;HaplotypeScore=0.0;MQ=21.46;MQ0=42;MQRankSum=2.784;QD=5.4;ReadPosRankSum=1.039;SNPEFF_AMINO_ACID_CHANGE=V312I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1599766_1599911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234800    GT:AD:DP:GQ:PL    0/1:72,50:122:99:688,0,801
1    1599888    rs2072923    A    G    1436.14    MQFilter40    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.133;DB;DP=157;Dels=0.0;FS=42.0;HRun=0;HaplotypeScore=2.3294;MQ=29.62;MQ0=24;MQRankSum=6.988;QD=9.15;ReadPosRankSum=-1.705;SNPEFF_AMINO_ACID_CHANGE=S286;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1599766_1599911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234800    GT:AD:DP:GQ:PL    0/1:90,67:157:99:1466,0,1446
1    1599940    rs61776767    C    T    210.15    MQFilter40;QDFilter2    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.65;DB;DP=126;Dels=0.0;FS=1.112;HRun=1;HaplotypeScore=3.5507;MQ=31.68;MQ0=31;MQRankSum=-6.974;QD=1.67;ReadPosRankSum=-0.756;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481276    GT:AD:DP:GQ:PL    0/1:72,54:126:99:240,0,1982
1    1599974    rs113499489    A    C    225.30    MQFilter40    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.63;MQ0=12;MQRankSum=-5.444;QD=2.17;ReadPosRankSum=1.419;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481276    GT:AD:DP:GQ:PL    0/1:67,36:104:99:255,0,2168
1    1600051    .    C    G    79.45    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.412;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8938;MQ=42.07;MQ0=3;MQRankSum=-3.004;QD=2.65;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481276    GT:AD:DP:GQ:PL    0/1:21,9:30:99:109,0,620
1    1600061    .    G    A    54.81    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.553;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.65;MQ0=2;MQRankSum=-1.567;QD=2.38;ReadPosRankSum=1.926;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481276    GT:AD:DP:GQ:PL    0/1:17,6:23:84.81:85,0,614
1    1600091    rs142755543    TTG    T    136.38    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=84.3696;IndelType=D;MQ=44.79;MQ0=0;MQRankSum=-1.333;QD=9.74;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481276    GT:AD:DP:GQ:PL    0/1:9,5:14:99:175,0,393
1    1602787    rs4639697    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234800    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    1608229    rs143080014    C    T    958.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.99;MQ0=4;QD=22.82;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_1607817_1608285;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234800    GT:AD:DP:GQ:PL    1/1:1,41:42:93.15:991,93,0
1    1608394    rs146877222    C    T    180.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.11;MQ0=6;QD=8.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234800    GT:AD:DP:GQ:PL    1/1:3,18:21:24.01:213,24,0
1    1635004    rs874516    T    C    813.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.07;MQ0=0;QD=27.1;SNPEFF_AMINO_ACID_CHANGE=K44;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1634915_1635008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341028    GT:AD:DP:GQ:PL    1/1:0,30:30:69.19:846,69,0
1    1635619    rs2076329    T    C    249.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.81;MQ0=0;QD=22.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378635    GT:AD:DP:GQ:PL    1/1:0,11:11:21.07:282,21,0
1    1635749    rs55880629    C    A    619.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.11;MQ0=1;QD=28.14;SNPEFF_AMINO_ACID_CHANGE=R499;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1635662_1635783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356200    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:652,54,0
1    1636044    rs1059822    G    A    941.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=36.73;MQ0=1;QD=28.52;SNPEFF_AMINO_ACID_CHANGE=Y469;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1635989_1636094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356200    GT:AD:DP:GQ:PL    1/1:0,32:32:84.24:974,84,0
1    1636274    rs2179381    C    T    982.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8808;MQ=42.71;MQ0=5;MQRankSum=0.669;QD=22.34;ReadPosRankSum=0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378635    GT:AD:DP:GQ:PL    1/1:2,42:44:53.22:1016,53,0
1    1636355    rs2377226    A    G    202.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.168;DB;DP=90;Dels=0.0;FS=6.347;HRun=0;HaplotypeScore=0.0;MQ=42.1;MQ0=15;MQRankSum=-6.696;QD=2.25;ReadPosRankSum=1.186;SNPEFF_AMINO_ACID_CHANGE=I448;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1636343_1636464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356200    GT:AD:DP:GQ:PL    0/1:54,36:90:99:233,0,1766
1    1639046    rs138369165    C    G    226.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.77;MQ0=14;QD=8.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341028    GT:AD:DP:GQ:PL    1/1:2,25:27:24.05:260,24,0
1    1639062    rs149613000    T    C    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.09;MQ0=9;QD=7.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341028    GT:AD:DP:GQ:PL    1/1:0,13:13:12.03:134,12,0
1    1639801    rs74378830    T    C    33.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.0;MQ0=3;QD=6.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341028    GT:AD:DP:GQ:PL    1/1:0,5:5:6.01:65,6,0
1    1644908    rs2179383    C    T    65.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.64;MQ0=3;QD=10.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    1/1:0,6:6:9.02:98,9,0
1    1645050    rs77869096    C    T    39.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=16.2;MQ0=6;QD=4.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    1/1:0,9:9:6.02:70,6,0
1    1645093    rs80318714    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.74;MQ0=4;QD=5.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    1/1:0,6:6:6.02:67,6,0
1    1645115    rs78711691    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.5;MQ0=5;QD=5.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    1/1:0,7:7:6.02:67,6,0
1    1647649    rs70937179    C    CT    1206.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=130.5973;IndelType=I;MQ=50.97;MQ0=1;QD=44.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    1/1:1,26:26:78.27:1248,78,0
1    1647686    rs909823    A    C    1533.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.12;MQ0=0;QD=33.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1567,120,0
1    1647722    rs114460890    G    T    136.15    QDFilter2    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=87;Dels=0.0;FS=15.159;HRun=2;HaplotypeScore=1.4942;MQ=51.0;MQ0=0;MQRankSum=-7.023;QD=1.55;ReadPosRankSum=-1.125;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    0/1:63,24:87:99:166,0,2152
1    1647745    rs72634830    G    A    567.98    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=4.131;DB;DP=117;Dels=0.0;FS=6.244;HRun=0;HaplotypeScore=2.7156;MQ=50.28;MQ0=0;MQRankSum=-7.842;QD=4.85;ReadPosRankSum=-2.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    0/1:77,40:117:99:598,0,2171
1    1647753    rs74045984    C    T    866.38    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.072;DB;DP=138;Dels=0.0;FS=6.21;HRun=3;HaplotypeScore=3.294;MQ=50.7;MQ0=0;MQRankSum=-7.741;QD=6.28;ReadPosRankSum=-2.952;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    0/1:88,50:138:99:896,0,2711
1    1647778    rs72901773    C    G    1239.88    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.781;DB;DP=168;Dels=0.0;FS=4.968;HRun=0;HaplotypeScore=2.133;MQ=50.74;MQ0=0;MQRankSum=-8.766;QD=7.38;ReadPosRankSum=-0.794;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479362    GT:AD:DP:GQ:PL    0/1:106,62:168:99:1270,0,3251
1    1647814    rs72901775    T    C    2076.40    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=207;Dels=0.0;FS=3.266;HRun=0;HaplotypeScore=0.0;MQ=50.68;MQ0=0;MQRankSum=-9.876;QD=10.03;ReadPosRankSum=2.386;SNPEFF_AMINO_ACID_CHANGE=N9D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1647785_1647917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341028    GT:AD:DP:GQ:PL    0/1:122,85:207:99:2106,0,3631
1    1647871    rs72909014    T    C    931.79    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=1.411;DB;DP=147;Dels=0.0;FS=3.247;HRun=1;HaplotypeScore=4.4943;MQ=52.21;MQ0=0;MQRankSum=-8.078;QD=6.34;ReadPosRankSum=-2.311;SNPEFF_AMINO_ACID_CHANGE=R100;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1647785_1647917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356200    GT:AD:DP:GQ:PL    0/1:99,48:147:99:962,0,3216
1    1647893    .    C    CTTTCTT    2514.08    PASS    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=5.286;DP=130;FS=33.408;HRun=0;HaplotypeScore=857.6175;IndelType=I;MQ=52.89;MQ0=0;MQRankSum=-7.416;QD=19.34;ReadPosRankSum=-1.902;SNPEFF_AMINO_ACID_CHANGE=-117KK;SNPEFF_CODON_CHANGE=-/AAGAAA;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_1647785_1647917;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357760    GT:AD:DP:GQ:PL    0/1:110,17:130:99:2553,0,5308
1    1647968    .    C    CAT    818.60    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=6.194;DP=66;FS=3.717;HRun=0;HaplotypeScore=468.7992;IndelType=I;MQ=52.65;MQ0=0;MQRankSum=-6.209;QD=12.4;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496482    GT:AD:DP:GQ:PL    0/1:48,18:66:99:858,0,2027
1    1647971    rs77394327    G    A    133.09    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=64;Dels=0.0;FS=3.759;HRun=1;HaplotypeScore=0.6651;MQ=52.4;MQ0=0;MQRankSum=-6.169;QD=2.08;ReadPosRankSum=-0.236;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496482    GT:AD:DP:GQ:PL    0/1:46,18:64:99:163,0,1652
1    1647983    rs74429813    T    A    168.01    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=0.515;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=52.96;MQ0=0;MQRankSum=-4.988;QD=3.5;ReadPosRankSum=-0.013;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496482    GT:AD:DP:GQ:PL    0/1:36,11:48:99:198,0,1270
1    1647990    rs76519969    C    T    183.20    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=3.187;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=51.19;MQ0=1;MQRankSum=-4.913;QD=4.07;ReadPosRankSum=-1.183;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496482    GT:AD:DP:GQ:PL    0/1:34,11:45:99:213,0,918
1    1648002    rs77107184    C    T    98.88    PASS    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.33;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=52.03;MQ0=1;MQRankSum=-4.021;QD=2.67;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496482    GT:AD:DP:GQ:PL    0/1:30,7:37:99:129,0,995
1    1648018    rs79409185    C    T    34.56    QDFilter2    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=2.409;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.19;MQ0=1;MQRankSum=-3.15;QD=1.23;ReadPosRankSum=-0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496482    GT:AD:DP:GQ:PL    0/1:23,4:28:64.55:65,0,597
1    1648027    rs61776857    T    C    597.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.47;MQ0=1;QD=27.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496482    GT:AD:DP:GQ:PL    1/1:0,22:22:57.13:631,57,0
1    1650619    rs74763557    C    A    102.88    QDFilter2    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.437;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.74;MQ0=0;MQRankSum=-4.957;QD=1.87;ReadPosRankSum=-2.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:39,16:55:99:133,0,1432
1    1650657    rs72909028    C    G    643.87    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6545;MQ=53.6;MQ0=0;MQRankSum=-5.395;QD=7.32;ReadPosRankSum=-0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:54,34:88:99:674,0,1958
1    1650787    rs1137003    T    C    2527.05    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.714;DB;DP=244;DS;Dels=0.0;FS=0.492;HRun=0;HaplotypeScore=8.0444;MQ=55.88;MQ0=0;MQRankSum=-1.003;QD=10.36;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=H112R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1650767_1650894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404249    GT:AD:DP:GQ:PL    0/1:141,103:244:99:2557,0,4503
1    1650797    rs1059830    A    G    2277.93    SnpCluster    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.501;DB;DP=241;DS;Dels=0.0;FS=1.061;HRun=0;HaplotypeScore=6.2245;MQ=56.05;MQ0=0;MQRankSum=-1.209;QD=9.45;ReadPosRankSum=-0.337;SNPEFF_AMINO_ACID_CHANGE=W109R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1650797_1650894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357760    GT:AD:DP:GQ:PL    0/1:145,96:241:99:2308,0,4711
1    1650801    rs1137004    T    C    1974.46    SnpCluster    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.155;DB;DP=230;DS;Dels=0.0;FS=3.91;HRun=0;HaplotypeScore=7.2179;MQ=55.77;MQ0=0;MQRankSum=-1.295;QD=8.58;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=E107;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1650797_1650894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357760    GT:AD:DP:GQ:PL    0/1:142,88:230:99:2004,0,4855
1    1650807    rs1137005    T    C    3855.58    SnpCluster    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=5.786;DB;DP=235;DS;Dels=0.0;FS=7.709;HRun=1;HaplotypeScore=5.5028;MQ=55.65;MQ0=0;MQRankSum=6.262;QD=16.41;ReadPosRankSum=0.629;SNPEFF_AMINO_ACID_CHANGE=R105;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1650797_1650894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357760    GT:AD:DP:GQ:PL    0/1:93,142:235:99:3856,0,2569
1    1650832    rs72909030    A    G    2866.63    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=250;DS;Dels=0.0;FS=7.091;HRun=0;HaplotypeScore=4.8969;MQ=55.23;MQ0=0;MQRankSum=-4.011;QD=11.47;ReadPosRankSum=-2.071;SNPEFF_AMINO_ACID_CHANGE=V63A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1650767_1650894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356200    GT:AD:DP:GQ:PL    0/1:144,106:250:99:2897,0,4552
1    1650845    rs1059831    G    A    4642.98    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.509;DB;DP=250;DS;Dels=0.0;FS=6.097;HRun=1;HaplotypeScore=1.5782;MQ=55.41;MQ0=0;MQRankSum=5.261;QD=18.57;ReadPosRankSum=0.165;SNPEFF_AMINO_ACID_CHANGE=R59W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1650767_1650894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356200    GT:AD:DP:GQ:PL    0/1:103,147:250:99:4643,0,2854
1    1650920    rs36191908    G    A    1023.39    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=2.467;DB;DP=194;DS;Dels=0.0;FS=3.348;HRun=0;HaplotypeScore=3.4599;MQ=51.73;MQ0=0;MQRankSum=-7.305;QD=5.28;ReadPosRankSum=-3.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:128,66:194:99:1053,0,3890
1    1650960    rs72634834    G    A    813.26    PASS    AB=0.601;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.415;DB;DP=178;DS;Dels=0.0;FS=22.081;HRun=1;HaplotypeScore=0.5784;MQ=50.52;MQ0=0;MQRankSum=-7.759;QD=4.57;ReadPosRankSum=-0.714;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:107,71:178:99:843,0,3581
1    1650967    rs75384210    T    C    768.76    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.928;DB;DP=161;DS;Dels=0.0;FS=26.695;HRun=0;HaplotypeScore=0.0;MQ=50.57;MQ0=0;MQRankSum=-7.927;QD=4.75;ReadPosRankSum=-0.639;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:95,65:161:99:799,0,3286
1    1650996    rs74223875    T    C    869.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.571;DB;DP=103;Dels=0.0;FS=5.812;HRun=0;HaplotypeScore=0.9469;MQ=50.5;MQ0=0;MQRankSum=-4.785;QD=8.44;ReadPosRankSum=1.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:56,42:103:99:899,0,1801
1    1651003    rs76941027    G    A    793.75    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.286;DB;DP=90;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.8631;MQ=49.28;MQ0=0;MQRankSum=-4.41;QD=8.82;ReadPosRankSum=0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:49,39:90:99:824,0,1480
1    1651047    rs72909034    C    T    460.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=10.6316;MQ=44.51;MQ0=0;MQRankSum=-2.007;QD=10.24;ReadPosRankSum=0.994;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:25,20:45:99:491,0,324
1    1651062    .    T    TC    92.49    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DP=25;FS=0.0;HRun=0;HaplotypeScore=597.6955;IndelType=I;MQ=30.48;MQ0=0;MQRankSum=-1.217;QD=3.7;ReadPosRankSum=3.765;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:20,5:25:99:132,0,477
1    1651065    .    T    TTTTTC    314.51    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DP=25;FS=0.0;HRun=0;HaplotypeScore=603.2845;IndelType=I;MQ=30.48;MQ0=0;MQRankSum=-0.146;QD=12.58;ReadPosRankSum=2.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:20,5:25:99:354,0,356
1    1651076    rs34673677    ACGGAGT    A    509.89    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=429.8453;IndelType=D;MQ=31.29;MQ0=0;MQRankSum=-0.386;QD=31.87;ReadPosRankSum=-0.965;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:8,8:16:99:549,0,193
1    1651077    rs70937183    CGG    C    323.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=425.8032;IndelType=D;MQ=31.43;MQ0=0;MQRankSum=-1.736;QD=21.56;ReadPosRankSum=1.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:9,6:15:18.34:365,18,0
1    1651093    .    C    T    49.39    MQFilter40;SnpCluster    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.58;MQ0=0;MQRankSum=-1.333;QD=3.53;ReadPosRankSum=2.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:9,5:14:79.39:79,0,167
1    1651094    .    A    G    75.03    MQFilter40;SnpCluster    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.58;MQ0=0;MQRankSum=-0.667;QD=5.36;ReadPosRankSum=2.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:9,5:14:99:105,0,179
1    1651098    .    A    G    64.92    MQFilter40;SnpCluster    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=34.97;MQ0=0;MQRankSum=-0.271;QD=4.99;ReadPosRankSum=1.855;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:8,5:13:94.91:95,0,157
1    1651103    rs36153776    G    A    70.30    MQFilter40;SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=36.57;MQ0=0;MQRankSum=-0.47;QD=7.03;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:5,5:10:99:100,0,156
1    1651104    .    G    T    69.32    MQFilter40;SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=36.57;MQ0=0;MQRankSum=-1.668;QD=6.93;ReadPosRankSum=0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    0/1:5,5:10:99:99,0,153
1    1653004    rs36039898    T    C    2033.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3135;MQ=47.88;MQ0=1;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:0,67:68:99:2067,162,0
1    1653028    rs16825265    C    T    2608.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.76;MQ0=1;QD=31.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2641,199,0
1    1653303    rs35548050    T    C    550.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.37;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:584,45,0
1    1653332    rs34272957    GT    G    342.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=90.7491;IndelType=D;MQ=45.49;MQ0=0;QD=34.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:385,30,0
1    1653361    rs2206307    C    T    195.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.95;MQ0=0;QD=32.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
1    1653414    rs2206308    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=16.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    1653885    rs61777493    C    A    314.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.21;MQ0=4;QD=20.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:1,14:15:30.09:348,30,0
1    1654013    rs74045997    C    G    292.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.44;MQ0=5;QD=8.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:0,34:34:30.07:326,30,0
1    1654038    rs61777494    G    A    635.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.53;MQ0=10;QD=12.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:6,45:51:60.17:669,60,0
1    1654058    rs61777495    C    T    851.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.22;MQ0=9;QD=14.69;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_1654027_1654270;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356200    GT:AD:DP:GQ:PL    1/1:6,52:58:78.22:885,78,0
1    1654064    .    A    T    128.78    MQFilter40    AC=2;AF=1.00;AN=2;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.28;MQ0=9;QD=2.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:6,53:59:20.92:162,21,0
1    1654065    rs35174499    AGCG    A    2501.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=741.5546;IndelType=D;MQ=33.65;MQ0=9;QD=41.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401096    GT:AD:DP:GQ:PL    1/1:6,55:50:99:2543,150,0
1    1663831    rs3817856    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355439    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    1664019    rs2294488    T    C    72.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246421    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
1    1666175    rs61777509    C    T    372.94    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.668;DB;DP=80;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=1.8499;MQ=14.25;MQ0=44;MQRankSum=0.441;QD=4.66;ReadPosRankSum=-1.743;SNPEFF_AMINO_ACID_CHANGE=R229H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1666129_1666274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246421    GT:AD:DP:GQ:PL    0/1:40,40:80:77.07:403,0,77
1    1666251    rs77655487    G    A    68.92    MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.506;DB;DP=62;Dels=0.0;FS=37.08;HRun=0;HaplotypeScore=0.0;MQ=19.75;MQ0=20;MQRankSum=2.396;QD=1.11;ReadPosRankSum=-2.497;SNPEFF_AMINO_ACID_CHANGE=R204W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1666129_1666274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246421    GT:AD:DP:GQ:PL    0/1:43,19:62:98.91:99,0,737
1    1666338    rs2072924    G    A    250.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=21.0;MQ0=7;QD=13.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246421    GT:AD:DP:GQ:PL    1/1:0,18:18:27.04:284,27,0
1    1666342    rs76084492    A    G    203.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=23.4;MQ0=5;QD=12.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246421    GT:AD:DP:GQ:PL    1/1:0,16:16:24.02:236,24,0
1    1669734    rs80140081    G    T    1083.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246421    GT:AD:DP:GQ:PL    1/1:1,34:35:93.23:1117,93,0
1    1670570    rs150051592    T    C    207.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.35;MQ0=13;QD=6.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246421    GT:AD:DP:GQ:PL    1/1:0,31:31:27.01:240,27,0
1    1685213    rs2072928    C    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400922    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    1686040    rs4751    G    T    1356.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=N230K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1685983_1686137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342348    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1389,102,0
1    1686943    rs2072929    T    C    2027.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.07;MQ0=0;QD=27.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460602    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2061,180,0
1    1686962    rs2076327    C    T    1929.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.14;MQ0=0;QD=35.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460602    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1963,156,0
1    1687625    rs34306661    T    C    1006.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460602    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1040,78,0
1    1687791    rs72634840    C    T    613.36    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=64;Dels=0.0;FS=7.596;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=1.555;QD=9.58;ReadPosRankSum=-1.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460602    GT:AD:DP:GQ:PL    0/1:39,25:64:99:643,0,1308
1    1688192    rs2281173    A    G    377.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460602    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:410,33,0
1    1688469    rs4648623    C    G    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464373    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    1688513    rs4648624    G    T    231.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=33.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464373    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:264,21,0
1    1689762    rs2235537    T    C    1137.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464373    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1170,87,0
1    1690126    rs79655042    A    AAC    288.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=21.1374;IndelType=I;MQ=56.04;MQ0=0;QD=48.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464373    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:330,18,0
1    1696659    rs75906779    A    G    1456.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341426    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1490,114,0
1    1853615    rs113294876    T    TCTGA    606.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=24.7128;IndelType=I;MQ=53.95;MQ0=0;QD=75.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493964    GT:AD:DP:GQ:PL    1/1:1,7:8:24.08:649,24,0
1    1854321    rs2250833    A    G    452.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493964    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:486,39,0
1    1859131    rs4648734    C    T    419.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=V431I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1859046_1859185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000493964    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:453,36,0
1    1886859    rs3795290    C    T    342.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461752    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:375,30,0
1    1887019    rs28548017    A    G    2795.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=*763Q;SNPEFF_CODON_CHANGE=Tag/Cag;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_1_1884752_1887289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2829,220,0
1    1887091    rs139735565    CG    C    1604.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=1;HaplotypeScore=289.8654;IndelType=D;MQ=40.18;MQ0=0;QD=38.2;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_1884752_1887289;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:7,35:41:99:1646,120,0
1    1887111    rs3838975    GC    G    1695.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=2;HaplotypeScore=259.2667;IndelType=D;MQ=42.1;MQ0=0;QD=36.86;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_1884752_1887289;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:2,44:46:99:1738,135,0
1    1887245    rs28575980    G    A    990.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=A134;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1887150_1887289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000461752    GT:AD:DP:GQ:PL    1/1:0,30:30:78.23:1024,78,0
1    1888193    rs3820011    C    A    342.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_AMINO_ACID_CHANGE=G628C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1888059_1888223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:376,27,0
1    1888330    rs28535696    C    T    128.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
1    1888369    rs2803285    A    G    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    1891477    rs2748972    A    G    209.47    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=11;Dels=0.0;FS=6.532;HRun=2;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.762;QD=19.04;ReadPosRankSum=-1.179;SNPEFF_AMINO_ACID_CHANGE=S10P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1891403_1891504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461752    GT:AD:DP:GQ:PL    0/1:3,8:11:50.04:239,0,50
1    1895177    rs7523728    C    T    710.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:744,54,0
1    1896440    rs16824585    G    A    523.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=L488;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1896327_1896500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:557,42,0
1    1896553    rs28625839    C    T    251.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:284,21,0
1    1897591    rs4648599    C    T    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    1897753    rs4648600    C    G    735.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=24.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,30:30:60.19:768,60,0
1    1898045    rs28712827    G    A    209.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
1    1899861    rs4648601    C    T    118.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
1    1900024    rs56985589    TG    T    1242.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.368;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=91.2799;IndelType=D;MQ=50.96;MQ0=0;MQRankSum=-1.418;QD=37.66;ReadPosRankSum=-0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:2,31:33:51.32:1285,51,0
1    1900106    .    T    TCTC    3945.50    PASS    AC=2;AF=1.00;AN=2;DP=59;FS=0.0;HRun=0;HaplotypeScore=196.3779;IndelType=I;MQ=51.69;MQ0=0;QD=66.87;SNPEFF_AMINO_ACID_CHANGE=K404KR;SNPEFF_CODON_CHANGE=aag/aaGAGg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_1900074_1900272;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:6,53:59:99:3946,172,0
1    1900232    rs16824588    T    C    1515.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.098;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5777;MQ=53.36;MQ0=0;MQRankSum=-0.229;QD=27.56;ReadPosRankSum=1.667;SNPEFF_AMINO_ACID_CHANGE=I363V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1900074_1900272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:1,54:55:98.39:1549,98,0
1    1900332    rs55709963    A    G    529.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.64;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:563,45,0
1    1900339    rs56126097    A    G    419.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.09;MQ0=0;QD=27.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:453,36,0
1    1900375    rs55676322    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=8.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
1    1900376    rs148154906    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=8.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
1    1900445    rs61776965    C    T    40.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=10.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:72,6,0
1    1900454    rs6681749    A    G    64.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=16.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:96,9,0
1    1903303    rs4648603    C    T    151.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
1    1903712    rs13303201    C    A    130.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
1    1905306    rs56313717    C    A    78.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=13.11;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    0/1:3,3:6:72.37:109,0,72
1    1916587    rs3795283    G    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378590    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    1916890    rs3795280    C    T    1727.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.661;QD=30.85;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=L145;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1916825_1916929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1761,101,0
1    1917058    rs34331632    A    G    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378590    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
1    1918191    rs4233028    A    G    113.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378590    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:146,12,0
1    1918488    rs4350140    A    G    801.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=28.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378590    GT:AD:DP:GQ:PL    1/1:0,28:28:63.19:834,63,0
1    1918535    rs4535948    A    T    332.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378590    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:366,27,0
1    1918584    rs4603072    C    T    144.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=20.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378590    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:177,15,0
1    1918595    rs4466593    G    A    194.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378590    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:227,18,0
1    1922303    rs13303195    C    T    1121.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270720    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1155,84,0
1    1956362    rs2376805    G    A    1149.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378585    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1183,87,0
1    1957037    rs2229110    T    C    2203.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.84;MQ0=0;QD=28.99;SNPEFF_AMINO_ACID_CHANGE=G110;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1956957_1957177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378585    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2236,169,0
1    1957299    rs3820007    C    T    119.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378585    GT:AD:DP:GQ:PL    1/1:0,4:5:12.04:152,12,0
1    1960926    rs28581504    T    C    296.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378585    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:329,24,0
1    1987803    rs2803309    G    A    89.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484419    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    1987993    rs12184    T    C    319.53    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.643;DB;DP=21;Dels=0.0;FS=6.923;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.181;QD=15.22;ReadPosRankSum=-0.398;SNPEFF_AMINO_ACID_CHANGE=D42;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1987923_1988012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503297    GT:AD:DP:GQ:PL    0/1:8,13:21:99:350,0,220
1    1991014    rs1878745    A    G    133.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=13.38;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=P106;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_1990980_1991030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378567    GT:AD:DP:GQ:PL    0/1:5,5:10:99:164,0,138
1    2005740    rs2459986    T    C    42.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=51.77;MQ0=0;QD=14.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479566    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:73,6,0
1    2077266    rs9442616    G    A    34.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378567    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:65,0,32
1    2077409    rs385039    A    G    313.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.435;DB;DP=24;Dels=0.0;FS=2.156;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.375;QD=13.08;ReadPosRankSum=0.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378567    GT:AD:DP:GQ:PL    0/1:12,12:24:99:344,0,385
1    2082458    rs262670    C    T    56.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.39;MQ0=0;MQRankSum=-0.248;QD=6.28;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419838    GT:AD:DP:GQ:PL    0/1:6,3:9:86.53:87,0,188
1    2082489    rs262669    G    A    214.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419838    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
1    2082505    rs9442619    C    T    38.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.8;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419838    GT:AD:DP:GQ:PL    0/1:3,2:5:68.98:69,0,71
1    2082566    rs2257182    T    C    75.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419838    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
1    2082602    rs262668    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419838    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    2087557    rs3123592    T    C    762.22    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.261;DB;DP=45;Dels=0.0;FS=7.429;HRun=0;HaplotypeScore=0.8321;MQ=59.49;MQ0=0;MQRankSum=-1.256;QD=16.94;ReadPosRankSum=0.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486681    GT:AD:DP:GQ:PL    0/1:19,26:45:99:792,0,577
1    2113565    rs262688    T    G    667.02    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=17.55;ReadPosRankSum=-1.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400918    GT:AD:DP:GQ:PL    0/1:16,22:38:99:697,0,540
1    2113776    .    C    T    597.20    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.467;DP=59;Dels=0.0;FS=2.381;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=1.762;QD=10.12;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400918    GT:AD:DP:GQ:PL    0/1:35,24:59:99:627,0,1035
1    2117155    rs262687    G    A    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.36;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378543    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:71,0,70
1    2118539    rs2503699    T    C    351.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378543    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:385,30,0
1    2118724    rs71578367    C    CT    64.52    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=88.1773;IndelType=I;MQ=57.76;MQ0=0;MQRankSum=-0.667;QD=4.03;ReadPosRankSum=-1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378543    GT:AD:DP:GQ:PL    0/1:11,5:16:99:104,0,147
1    2121118    rs2503701    C    T    405.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.75;MQ0=0;QD=22.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497675    GT:AD:DP:GQ:PL    1/1:2,15:18:39.09:438,39,0
1    2125172    rs1058411    G    A    483.09    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.262;DB;DP=29;Dels=0.0;FS=1.585;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-2.015;QD=16.66;ReadPosRankSum=0.199;SNPEFF_AMINO_ACID_CHANGE=P126S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2125078_2125349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf86;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378546    GT:AD:DP:GQ:PL    0/1:12,17:29:99:513,0,342
1    2286947    rs1039100    A    G    574.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378529    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:608,45,0
1    2288747    rs2645086    T    C    117.54    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.51;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378529    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:148,0,26
1    2328714    rs2645081    A    G    490.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493207    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:523,39,0
1    2332391    rs12037485    C    T    2954.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288774    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2987,220,0
1    2338126    rs3795269    C    A    312.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502666    GT:AD:DP:GQ:PL    1/1:1,12:13:30.09:346,30,0
1    2340200    rs2494598    T    C    563.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_AMINO_ACID_CHANGE=T97;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2339891_2340297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288774    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:596,45,0
1    2409892    rs12727342    A    G    107.34    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=15;Dels=0.0;FS=5.756;HRun=1;HaplotypeScore=1.6584;MQ=58.45;MQ0=0;MQRankSum=-1.154;QD=7.16;ReadPosRankSum=2.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288766    GT:AD:DP:GQ:PL    0/1:7,8:15:99:137,0,199
1    2411451    rs10797428    A    G    532.71    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=38;Dels=0.0;FS=1.315;HRun=3;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-1.783;QD=14.02;ReadPosRankSum=0.899;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498669    GT:AD:DP:GQ:PL    0/1:17,21:38:99:563,0,548
1    2420590    rs10752744    T    C    1112.92    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.873;DB;DP=66;Dels=0.0;FS=1.256;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.61;QD=16.86;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278878    GT:AD:DP:GQ:PL    0/1:26,40:66:99:1143,0,794
1    2420913    rs6668720    A    G    244.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.053;QD=15.28;ReadPosRankSum=2.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278878    GT:AD:DP:GQ:PL    0/1:8,8:16:99:274,0,212
1    2422614    rs2477699    G    A    543.09    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.459;DB;DP=35;Dels=0.0;FS=3.675;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.479;QD=15.52;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278878    GT:AD:DP:GQ:PL    0/1:18,17:35:99:573,0,604
1    2430617    rs2296442    C    T    333.15    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=20;Dels=0.0;FS=10.349;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.051;QD=16.66;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=I129;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2430523_2430669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378483    GT:AD:DP:GQ:PL    0/1:9,11:20:99:363,0,301
1    2433894    rs55874156    G    A    69.67    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.42;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=R288Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2433551_2436969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378483    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:100,0,21
1    2444414    rs7535528    G    A    742.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.916;DB;DP=70;Dels=0.0;FS=2.026;HRun=0;HaplotypeScore=1.3123;MQ=59.67;MQ0=0;MQRankSum=0.707;QD=10.6;ReadPosRankSum=0.609;SNPEFF_AMINO_ACID_CHANGE=A508V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2444327_2444478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435556    GT:AD:DP:GQ:PL    0/1:42,28:70:99:772,0,1142
1    2452569    rs2985862    T    C    804.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.524;DB;DP=60;Dels=0.0;FS=2.345;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=13.41;ReadPosRankSum=-0.569;SNPEFF_AMINO_ACID_CHANGE=K131;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2452540_2452754;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378466    GT:AD:DP:GQ:PL    0/1:30,30:60:99:835,0,882
1    2488153    rs4870    A    G    66.88    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=6.69;ReadPosRankSum=-0.741;SNPEFF_AMINO_ACID_CHANGE=K17R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2487805_2488172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355716    GT:AD:DP:GQ:PL    0/1:6,4:10:96.87:97,0,209
1    2494330    rs2234167    G    A    589.99    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.901;DB;DP=32;Dels=0.0;FS=3.637;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.141;QD=18.44;ReadPosRankSum=1.261;SNPEFF_AMINO_ACID_CHANGE=V241I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2494304_2494335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355716    GT:AD:DP:GQ:PL    0/1:14,18:32:99:620,0,310
1    2494785    rs8725    G    A    167.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=15;Dels=0.0;FS=3.136;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=11.16;ReadPosRankSum=0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409119    GT:AD:DP:GQ:PL    0/1:9,6:15:99:197,0,249
1    2522392    rs2296443    G    A    42.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=8.59;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464043    GT:AD:DP:GQ:PL    0/1:2,3:5:13.67:73,0,14
1    2527678    rs2260976    A    G    396.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=30.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378424    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:429,33,0
1    2528133    rs2843401    T    C    872.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288709    GT:AD:DP:GQ:PL    1/1:0,31:31:72.20:905,72,0
1    2560735    rs4648657    A    G    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511099    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
1    2560882    rs4648658    G    A    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.76;SNPEFF_AMINO_ACID_CHANGE=A14;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2560770_2560960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMEL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378411    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
1    2560903    rs4648659    T    G    80.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.85;SNPEFF_AMINO_ACID_CHANGE=P7;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2560770_2560960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMEL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378411    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
1    2573199    rs4648662    A    G    118.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_AMINO_ACID_CHANGE=L437;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_2572773_2573334;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401094    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
1    2985885    rs7413494    C    G    125.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270722    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
1    3312963    rs12726710    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270722    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
1    3319674    rs12562397    C    T    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270722    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:70,0,32
1    3319681    rs12562399    C    G    45.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270722    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:76,0,29
1    3328358    rs870124    T    C    915.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.988;DB;DP=64;Dels=0.0;FS=0.926;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.665;QD=14.3;ReadPosRankSum=2.142;SNPEFF_AMINO_ACID_CHANGE=S342P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3327948_3329364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509860    GT:AD:DP:GQ:PL    0/1:32,32:64:99:945,0,940
1    3328659    rs2493292    C    T    607.77    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.063;DB;DP=51;Dels=0.0;FS=1.072;HRun=1;HaplotypeScore=2.3113;MQ=59.55;MQ0=0;MQRankSum=-0.198;QD=11.92;ReadPosRankSum=-1.668;SNPEFF_AMINO_ACID_CHANGE=P442L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3327948_3329364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509860    GT:AD:DP:GQ:PL    0/1:26,25:51:99:638,0,781
1    3342364    rs11805974    C    T    224.98    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.535;DB;DP=23;Dels=0.0;FS=2.006;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=9.78;ReadPosRankSum=1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270722    GT:AD:DP:GQ:PL    0/1:14,9:23:99:255,0,497
1    3350134    rs10752734    T    C    291.38    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=1.758;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.88;MQ0=0;MQRankSum=1.637;QD=16.19;ReadPosRankSum=-1.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270722    GT:AD:DP:GQ:PL    0/1:5,13:18:9.92:321,0,10
1    3383665    rs7550948    G    A    378.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378373    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:412,30,0
1    3383898    rs6424078    A    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_AMINO_ACID_CHANGE=P267;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3383732_3383901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378378    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    3389727    rs2185639    C    T    695.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_AMINO_ACID_CHANGE=H370Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3389642_3389794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378378    GT:AD:DP:GQ:PL    1/1:0,24:24:60.14:729,60,0
1    3390238    rs2493323    T    A    76.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445297    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
1    3394250    rs10909948    C    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418137    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    3394456    rs4638054    T    C    1486.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=S201;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3394439_3394590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413250    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1520,117,0
1    3394640    rs4422946    A    G    1116.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=58.5;MQ0=0;QD=36.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418137    GT:AD:DP:GQ:PL    1/1:0,31:31:90.26:1149,90,0
1    3394674    rs4534324    T    C    526.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2443;MQ=58.84;MQ0=0;QD=26.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418137    GT:AD:DP:GQ:PL    1/1:0,20:20:51.11:560,51,0
1    3395039    rs10797395    G    A    1935.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=59.2;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=V263;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3394988_3395176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413250    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1969,150,0
1    3395229    rs4553117    T    C    363.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418137    GT:AD:DP:GQ:PL    1/1:0,13:13:36.07:397,36,0
1    3396609    rs881978    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418137    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    3397188    rs2487677    T    C    273.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418137    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:306,24,0
1    3410581    rs61746168    G    A    73.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=10.56;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=H1413Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3410560_3410688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    0/1:4,3:7:94.01:104,0,94
1    3413868    rs4648506    C    G    32.85    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.72;QD=4.11;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=G1137A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3413797_3413925;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    0/1:5,3:8:62.85:63,0,100
1    3418391    rs4648508    C    T    305.98    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.04;MQ0=0;MQRankSum=0.05;QD=17.0;ReadPosRankSum=0.553;SNPEFF_AMINO_ACID_CHANGE=P656;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3418360_3418485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294599    GT:AD:DP:GQ:PL    0/1:7,11:18:99:336,0,169
1    3418565    rs2821030    T    C    138.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=43.31;MQ0=0;QD=17.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294599    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:172,15,0
1    3440647    rs2794322    T    C    305.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294599    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:339,27,0
1    3440824    rs10797399    G    A    311.01    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.018;DB;DP=31;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=1.7356;MQ=60.0;MQ0=0;MQRankSum=-0.686;QD=10.03;ReadPosRankSum=-0.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294599    GT:AD:DP:GQ:PL    0/1:16,15:31:99:341,0,448
1    3496479    rs2794340    T    C    284.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=S131G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3496389_3496493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
1    3496571    .    G    A    62.32    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.46;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    0/1:2,3:5:68.83:92,0,69
1    3511934    rs7513275    A    G    269.93    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DB;DP=36;Dels=0.0;FS=3.247;HRun=0;HaplotypeScore=0.8321;MQ=59.36;MQ0=0;MQRankSum=-0.595;QD=7.5;ReadPosRankSum=0.811;SNPEFF_AMINO_ACID_CHANGE=M115T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3511902_3512011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    0/1:23,13:36:99:300,0,596
1    3512188    rs7554061    C    T    44.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:75,0,25
1    3518857    rs2821014    A    C    35.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
1    3518944    rs7521546    T    C    77.35    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.9665;MQ=56.62;MQ0=0;MQRankSum=1.38;QD=11.05;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    0/1:2,5:7:69.41:107,0,69
1    3519179    rs2794330    C    T    171.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.749;QD=14.28;ReadPosRankSum=2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    0/1:6,6:12:99:201,0,117
1    3527944    rs10797402    C    G    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_3527702_3528059;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356575    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
1    3544235    rs35816205    TA    T    1261.58    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=6.046;DB;DP=108;FS=0.0;HRun=3;HaplotypeScore=339.7939;IndelType=D;MQ=59.7;MQ0=0;MQRankSum=2.672;QD=11.68;ReadPosRankSum=0.582;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRAP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270708    GT:AD:DP:GQ:PL    0/1:62,46:108:99:1301,0,2118
1    3544346    rs4276857    T    C    264.39    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.469;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.002;QD=11.5;ReadPosRankSum=0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRAP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270708    GT:AD:DP:GQ:PL    0/1:13,10:23:99:294,0,445
1    3545175    rs139554736    GTTCTGGGAGCTCCTCCCCC    G    872.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=319.5668;IndelType=D;MQ=49.75;MQ0=0;QD=41.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRAP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270708    GT:AD:DP:GQ:PL    1/1:13,8:21:24.08:915,24,0
1    3548136    rs2760321    T    C    1156.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=A378;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3548030_3548221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRAP73;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270708    GT:AD:DP:GQ:PL    1/1:0,37:37:93.27:1189,93,0
1    3548342    rs2181485    G    A    73.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.8;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344579    GT:AD:DP:GQ:PL    0/1:2,3:5:61.96:104,0,62
1    3548542    rs2244942    T    C    82.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.77;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344579    GT:AD:DP:GQ:PL    0/1:3,3:6:13.65:112,0,14
1    3548832    rs2760320    G    C    1241.32    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.451;DB;DP=77;Dels=0.0;FS=3.376;HRun=2;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.786;QD=16.12;ReadPosRankSum=-0.252;SNPEFF_AMINO_ACID_CHANGE=I286M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3548777_3548902;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRAP73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424367    GT:AD:DP:GQ:PL    0/1:34,43:77:99:1271,0,1052
1    3549852    rs2273954    G    A    452.84    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.028;DB;DP=36;Dels=0.0;FS=4.66;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.412;QD=12.58;ReadPosRankSum=-0.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344579    GT:AD:DP:GQ:PL    0/1:19,17:36:99:483,0,537
1    3553789    rs2821058    T    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRAP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270708    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    3555428    rs3818330    G    T    307.43    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.122;QD=10.6;ReadPosRankSum=-0.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRAP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270708    GT:AD:DP:GQ:PL    0/1:17,12:29:99:337,0,452
1    3638674    rs1801174    C    T    2088.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=T102;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3638585_3638771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378290    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2121,156,0
1    3638834    rs12737840    C    T    225.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.18;QD=18.8;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    0/1:4,8:12:99:256,0,101
1    3640085    rs6424091    C    G    123.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.8321;MQ=55.21;MQ0=0;QD=24.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
1    3645835    rs2254530    C    A    1225    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1258,99,0
1    3645844    rs2096224    G    A    1359.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1393,105,0
1    3646080    .    CAGG    C    844.92    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.666;DP=35;FS=0.0;HRun=0;HaplotypeScore=194.0967;IndelType=D;MQ=59.3;MQ0=0;MQRankSum=-1.07;QD=24.14;ReadPosRankSum=-0.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    0/1:15,20:35:99:884,0,709
1    3646137    rs11589885    C    T    1043.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.37;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:1076,81,0
1    3646192    rs1885867    G    A    696.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:729,54,0
1    3646214    rs1885866    T    C    532.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:566,45,0
1    3646291    rs1885865    G    A    130.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
1    3647962    rs1745813    T    C    540.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346387    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:573,42,0
1    3659657    rs2298222    G    A    245.40    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.412;QD=16.36;ReadPosRankSum=0.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TP73-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544565    GT:AD:DP:GQ:PL    0/1:6,9:15:99:275,0,140
1    3662845    rs3737589    A    G    119.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.91;ReadPosRankSum=0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TP73-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418088    GT:AD:DP:GQ:PL    0/1:2,4:6:57.53:149,0,58
1    3669201    rs10797410    A    G    527.84    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.961;DB;DP=50;Dels=0.0;FS=1.102;HRun=0;HaplotypeScore=2.6103;MQ=58.6;MQ0=0;MQRankSum=-0.459;QD=10.56;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=P52;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3668962_3669363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294600    GT:AD:DP:GQ:PL    0/1:28,22:50:99:558,0,771
1    3669205    rs10910021    C    G    568.96    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.096;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.51;MQ0=0;MQRankSum=0.439;QD=12.11;ReadPosRankSum=-0.888;SNPEFF_AMINO_ACID_CHANGE=Q54E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3668962_3669363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294600    GT:AD:DP:GQ:PL    0/1:26,21:47:99:599,0,738
1    3671027    rs1181889    T    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294600    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
1    3672156    rs4648555    C    A    1448.96    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.708;DB;DP=93;Dels=0.0;FS=2.047;HRun=0;HaplotypeScore=0.8941;MQ=59.5;MQ0=0;MQRankSum=0.788;QD=15.58;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294600    GT:AD:DP:GQ:PL    0/1:43,50:93:99:1479,0,1308
1    3673149    rs35440871    CAA    C    218.49    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=67.9956;IndelType=D;MQ=58.2;MQ0=0;MQRankSum=-0.259;QD=16.81;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294600    GT:AD:DP:GQ:PL    0/1:7,6:13:99:258,0,330
1    3677933    rs1181883    T    C    1011.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=M267T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3677845_3677994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294600    GT:AD:DP:GQ:PL    1/1:0,31:31:84.23:1044,84,0
1    3732103    rs4648409    T    C    287.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=21;Dels=0.0;FS=13.512;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.836;QD=13.71;ReadPosRankSum=-1.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378230    GT:AD:DP:GQ:PL    0/1:9,12:21:99:318,0,264
1    3732172    rs4233019    C    T    264.16    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.157;QD=20.32;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378230    GT:AD:DP:GQ:PL    0/1:4,9:13:99:294,0,104
1    3732639    rs6702916    T    A    62.89    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=12.58;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378230    GT:AD:DP:GQ:PL    0/1:1,4:5:30.20:93,0,30
1    3732707    rs6702935    T    C    301.75    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=-1.48;QD=23.21;ReadPosRankSum=-1.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378230    GT:AD:DP:GQ:PL    0/1:2,11:13:45.70:332,0,46
1    3732782    rs6703035    T    C    350.61    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.356;DB;DP=25;Dels=0.0;FS=3.741;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.903;QD=14.02;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378230    GT:AD:DP:GQ:PL    0/1:11,14:25:99:381,0,339
1    3743109    rs2275834    A    G    320.25    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.001;QD=18.84;ReadPosRankSum=-2.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460038    GT:AD:DP:GQ:PL    0/1:5,12:17:99:350,0,158
1    3743132    rs4648344    T    C    394.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.261;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.87;MQ0=0;MQRankSum=0.783;QD=17.92;ReadPosRankSum=1.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460038    GT:AD:DP:GQ:PL    0/1:7,14:22:99:424,0,206
1    3743391    rs6688969    C    T    567.39    PASS    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=3.662;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.86;MQ0=0;MQRankSum=1.725;QD=22.7;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460038    GT:AD:DP:GQ:PL    0/1:7,18:25:99:597,0,176
1    3743433    rs5772126    T    TG    216.01    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=54.895;IndelType=I;MQ=61.94;MQ0=0;MQRankSum=1.386;QD=19.64;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460038    GT:AD:DP:GQ:PL    0/1:4,7:11:75.89:255,0,76
1    3746254    rs2275830    T    C    660.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460038    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:693,51,0
1    3746583    rs2275828    G    T    343.53    SnpCluster    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=2.942;DB;DP=32;Dels=0.0;FS=2.071;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.541;QD=10.74;ReadPosRankSum=0.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460038    GT:AD:DP:GQ:PL    0/1:19,13:32:99:374,0,578
1    3746585    rs2275827    T    G    540.83    SnpCluster    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DB;DP=33;Dels=0.0;FS=2.013;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.266;QD=16.39;ReadPosRankSum=-0.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460038    GT:AD:DP:GQ:PL    0/1:13,20:33:99:571,0,404
1    3746589    rs2275826    C    G    1064.10    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460038    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1097,78,0
1    3747580    rs6424058    C    T    256.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.208;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.706;QD=14.27;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443466    GT:AD:DP:GQ:PL    0/1:9,9:18:99:287,0,284
1    3747603    rs6413779    T    C    874.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443466    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:907,69,0
1    3750729    rs6677381    A    G    195.97    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=24.5;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428079    GT:AD:DP:GQ:PL    0/1:1,7:8:17.69:226,0,18
1    3750731    rs6680017    T    G    255.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428079    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:289,24,0
1    3753032    rs36051675    G    GT    81.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=24;HaplotypeScore=306.1414;IndelType=I;MQ=40.24;MQ0=0;QD=2.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428079    GT:AD:DP:GQ:PL    1/1:29,5:39:20.38:123,20,0
1    3753136    rs2275824    A    T    1193.71    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2657;MQ=52.45;MQ0=0;MQRankSum=-0.43;QD=15.3;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=L108I;SNPEFF_CODON_CHANGE=Tta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3753059_3753256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443466    GT:AD:DP:GQ:PL    0/1:34,44:78:99:1224,0,995
1    3755675    rs1891941    T    C    1812.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=E190;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3755647_3755683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428079    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1846,135,0
1    3755869    rs1891940    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    3755875    rs1891939    T    G    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    3756120    rs1539649    A    G    554.33    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.874;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.757;QD=11.79;ReadPosRankSum=1.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    0/1:25,22:47:99:584,0,898
1    3759784    rs10797347    A    G    788.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=F224L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3759673_3759887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:822,60,0
1    3761479    rs2275822    C    T    493.26    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.182;DB;DP=35;Dels=0.0;FS=5.153;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=0.116;QD=14.09;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=T128;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3761471_3761547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428079    GT:AD:DP:GQ:PL    0/1:17,18:35:99:523,0,519
1    3761650    rs2275821    A    G    433.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:467,36,0
1    3761772    rs7538067    C    T    581.76    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.655;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.417;QD=18.77;ReadPosRankSum=1.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    0/1:14,17:31:99:612,0,469
1    3763864    rs12047360    G    A    64.79    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.26;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    0/1:4,3:7:80.60:95,0,81
1    3764216    rs10492942    C    T    204.61    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.064;DB;DP=21;Dels=0.0;FS=4.191;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.036;QD=9.74;ReadPosRankSum=1.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    0/1:13,8:21:99:235,0,471
1    3765549    rs4648346    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    3768719    rs1539647    T    C    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    3768729    rs1539648    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378223    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    3775454    rs4376673    C    G    394.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338895    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:428,33,0
1    3782115    rs12127483    G    A    39.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.0;QD=7.84;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338895    GT:AD:DP:GQ:PL    0/1:3,2:5:52.95:69,0,53
1    3782608    rs10909809    C    T    446.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=29.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378212    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:480,36,0
1    3800242    rs3205087    A    G    1759.91    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.822;DB;DP=163;Dels=0.0;FS=0.587;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=-2.341;QD=10.8;ReadPosRankSum=-1.786;SNPEFF_AMINO_ACID_CHANGE=P254;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3800071_3801993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFFB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339350    GT:AD:DP:GQ:PL    0/1:90,73:163:99:1790,0,2761
1    3806358    rs10909819    T    C    359.09    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=1.577;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.887;QD=19.95;ReadPosRankSum=0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339350    GT:AD:DP:GQ:PL    0/1:5,13:18:99:389,0,141
1    3806643    rs4520357    T    A    349.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=27;Dels=0.0;FS=4.483;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=12.94;ReadPosRankSum=0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339350    GT:AD:DP:GQ:PL    0/1:15,12:27:99:379,0,464
1    3807593    rs4274008    G    C    2969.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.8;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=T53R;SNPEFF_CODON_CHANGE=aCg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_3807133_3807621;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf174;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361605    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3003,232,0
1    3809423    rs11807227    G    A    133.03    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=8.31;ReadPosRankSum=0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361605    GT:AD:DP:GQ:PL    0/1:11,5:16:99:163,0,316
1    4772053    rs1061968    T    C    4048.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;QD=28.31;SNPEFF_AMINO_ACID_CHANGE=C41;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_4771960_4772759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AJAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378190    GT:AD:DP:GQ:PL    1/1:1,142:143:99:4049,343,0
1    4772717    rs242056    G    A    706.59    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=3.401;DB;DP=62;Dels=0.0;FS=2.12;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.798;QD=11.4;ReadPosRankSum=-0.484;SNPEFF_AMINO_ACID_CHANGE=G263R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_4771960_4772759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AJAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378190    GT:AD:DP:GQ:PL    0/1:33,29:62:99:737,0,856
1    4829795    rs3950181    C    T    233.35    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=13.73;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AJAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378190    GT:AD:DP:GQ:PL    0/1:8,9:17:99:263,0,247
1    4832521    .    G    A    286.95    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DP=33;Dels=0.0;FS=3.325;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.356;QD=8.7;ReadPosRankSum=0.356;SNPEFF_AMINO_ACID_CHANGE=V367M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_4832340_4832585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AJAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378190    GT:AD:DP:GQ:PL    0/1:21,12:33:99:317,0,652
1    5925040    rs11121682    G    A    194.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=24.35;ReadPosRankSum=1.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468253    GT:AD:DP:GQ:PL    0/1:2,6:8:43.67:225,0,44
1    5926507    rs555164    T    C    101.10    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=21;Dels=0.0;FS=2.185;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.206;QD=4.81;ReadPosRankSum=1.113;SNPEFF_AMINO_ACID_CHANGE=E1190;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_5926433_5926518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:15,6:21:99:131,0,433
1    5927031    rs12122135    A    G    270.73    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.118;QD=24.61;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468253    GT:AD:DP:GQ:PL    0/1:2,9:11:48.93:301,0,49
1    5927738    rs2297791    G    A    217.03    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.837;DB;DP=19;Dels=0.0;FS=5.315;HRun=1;HaplotypeScore=2.7663;MQ=58.78;MQ0=0;MQRankSum=-0.041;QD=11.42;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:10,9:19:99:247,0,271
1    5933384    rs41280800    C    G    426.09    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.651;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.085;QD=9.47;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=G1081;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_5933312_5933395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:28,17:45:99:456,0,813
1    5934490    rs868163    A    G    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470763    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
1    5935162    rs1287637    A    T    393.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000378169    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:427,30,0
1    5937091    rs1622955    T    C    451.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:484,36,0
1    5937168    rs3747992    G    A    369.31    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.259;DB;DP=24;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=15.39;ReadPosRankSum=-0.029;SNPEFF_AMINO_ACID_CHANGE=R934;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_5937153_5937358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:10,14:24:99:399,0,256
1    5937327    rs3747990    C    T    234.95    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.81;MQ0=0;MQRankSum=0.129;QD=8.39;ReadPosRankSum=1.157;SNPEFF_AMINO_ACID_CHANGE=A881;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_5937153_5937358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:19,9:28:99:265,0,482
1    5937391    rs3747989    C    T    740.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:774,57,0
1    5937413    rs3747988    A    C    252.58    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=-1.423;QD=14.86;ReadPosRankSum=-1.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:5,12:17:99:283,0,162
1    5939544    rs11121915    T    G    2632.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2666,205,0
1    5947308    rs41280814    G    A    175.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=19.47;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378160    GT:AD:DP:GQ:PL    0/1:3,6:9:86.43:205,0,86
1    5948677    rs2282281    G    A    2601.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=59.7;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2635,196,0
1    5951013    rs34248917    C    T    105.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=9.63;ReadPosRankSum=-0.825;SNPEFF_AMINO_ACID_CHANGE=R143H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_5950928_5951088;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378160    GT:AD:DP:GQ:PL    0/1:6,5:11:99:136,0,188
1    5964991    rs3737234    T    C    77.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    1/1:0,5:5:11.98:110,12,0
1    5965179    rs11122125    A    G    119.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=11.96;ReadPosRankSum=-1.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:5,5:10:99:150,0,144
1    5965381    rs12120967    C    T    1648.41    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.848;DB;DP=128;Dels=0.0;FS=9.552;HRun=1;HaplotypeScore=4.7736;MQ=58.73;MQ0=0;MQRankSum=1.56;QD=12.88;ReadPosRankSum=1.273;SNPEFF_AMINO_ACID_CHANGE=E45;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_5965352_5965543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378160    GT:AD:DP:GQ:PL    0/1:67,61:128:99:1678,0,2039
1    5987696    rs7520105    T    C    654.35    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.075;DB;DP=47;Dels=0.0;FS=3.739;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.842;QD=13.92;ReadPosRankSum=0.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:25,22:47:99:684,0,829
1    6007446    rs551207    C    T    197.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=28.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:231,18,0
1    6007474    rs10779677    G    A    78.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
1    6021927    .    G    A    1138.18    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DP=70;Dels=0.0;FS=3.334;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=1.078;QD=16.26;ReadPosRankSum=1.872;SNPEFF_AMINO_ACID_CHANGE=H200;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6021854_6022009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1168,0,918
1    6038583    rs4908639    G    C    408.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPHP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378156    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:442,33,0
1    6145365    rs2294936    A    G    1176.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=30.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435937    GT:AD:DP:GQ:PL    1/1:1,38:39:93.30:1210,93,0
1    6145465    rs7512313    T    G    167.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=23.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435937    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:200,15,0
1    6155332    rs1555144    T    C    234.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164247    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:267,21,0
1    6157282    rs749434    C    T    54.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262450    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
1    6158562    rs2229002    A    G    789.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=28.21;SNPEFF_AMINO_ACID_CHANGE=S277;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6158545_6158915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNAB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458166    GT:AD:DP:GQ:PL    1/1:0,28:28:63.20:823,63,0
1    6195269    rs114398792    C    T    471.32    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.814;DB;DP=41;Dels=0.0;FS=1.271;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.67;QD=11.5;ReadPosRankSum=-0.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262450    GT:AD:DP:GQ:PL    0/1:24,17:41:99:501,0,697
1    6257856    rs2294713    G    A    90.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=12;Dels=0.0;FS=2.881;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=7.53;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234875    GT:AD:DP:GQ:PL    0/1:8,4:12:99:120,0,217
1    6305292    rs61760836    C    A    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.44;SNPEFF_AMINO_ACID_CHANGE=P96T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6305170_6305638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HES3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377898    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    6305303    rs61760837    C    A    83.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.82;SNPEFF_AMINO_ACID_CHANGE=A99;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6305170_6305638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HES3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377898    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    6313938    rs12735670    C    T    178.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_AMINO_ACID_CHANGE=R209H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6313778_6314207;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR153;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377893    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:212,18,0
1    6314349    rs6696630    A    G    192.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377893    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:226,18,0
1    6314479    rs12740426    C    T    659.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.03;MQ0=0;QD=27.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377893    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:693,57,0
1    6314822    rs11590458    T    C    1265.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.84;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=T48;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6314610_6315074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR153;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377893    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1298,105,0
1    6501152    rs55884073    C    T    306.37    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.156;QD=21.88;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377828    GT:AD:DP:GQ:PL    0/1:3,11:14:44.79:336,0,45
1    6522606    rs185344623    G    A    539.55    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.071;DB;DP=39;Dels=0.0;FS=1.724;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=13.83;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377828    GT:AD:DP:GQ:PL    0/1:18,21:39:99:570,0,521
1    6579607    rs1556035    C    T    967.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_6579505_6580069;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377737    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1000,78,0
1    6585804    rs13513    C    T    729.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:762,57,0
1    6586070    rs7548042    C    T    1919.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1953,144,0
1    6586553    rs2274553    C    T    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    6591937    rs932112    T    C    331.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462798    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:364,27,0
1    6601773    rs3761927    T    C    193.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=24.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:227,18,0
1    6609559    rs11122091    C    A    700.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:733,54,0
1    6609851    rs10864622    A    G    1058.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,30:30:81.24:1091,81,0
1    6609896    rs11579888    G    A    490.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:524,39,0
1    6610366    rs2063805    T    C    572.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=38.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:605,45,0
1    6610382    rs2063806    C    T    859.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=37.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:893,69,0
1    6614391    rs6693391    A    C    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=S58A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6614167_6614595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    6614415    rs6693400    A    G    141.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.57;SNPEFF_AMINO_ACID_CHANGE=W50R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6614167_6614595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:174,15,0
1    6614535    rs4908923    G    A    304.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.43;SNPEFF_AMINO_ACID_CHANGE=R10W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6614167_6614595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,9:10:27.08:337,27,0
1    6614653    rs4908924    C    G    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.64;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377705    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
1    6615690    rs925745    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328191    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    6615695    rs925744    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328191    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    6631319    rs11122096    G    A    793.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.49;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328191    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:827,63,0
1    6631352    rs34514006    TC    T    264.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=7;HaplotypeScore=59.0962;IndelType=D;MQ=60.98;MQ0=0;QD=24.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328191    GT:AD:DP:GQ:PL    1/1:1,10:11:30.07:306,30,0
1    6631431    rs11587438    C    T    76.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328191    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
1    6635231    rs10864628    A    G    1509.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_AMINO_ACID_CHANGE=K347E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6634691_6635452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328191    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1542,117,0
1    6636461    rs17492553    C    T    868.13    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.429;DB;DP=86;Dels=0.0;FS=0.884;HRun=0;HaplotypeScore=0.9997;MQ=59.14;MQ0=0;MQRankSum=1.356;QD=10.09;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328191    GT:AD:DP:GQ:PL    0/1:52,34:86:99:898,0,1513
1    6639184    rs114555118    C    T    732.92    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=59;Dels=0.0;FS=1.158;HRun=0;HaplotypeScore=0.9967;MQ=58.9;MQ0=0;MQRankSum=2.497;QD=12.42;ReadPosRankSum=0.083;SNPEFF_AMINO_ACID_CHANGE=A435V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6638713_6639686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351136    GT:AD:DP:GQ:PL    0/1:31,28:59:99:763,0,1001
1    6679848    rs2072948    C    T    1603.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377648    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1637,120,0
1    6681375    rs6695474    C    T    160.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377648    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:194,15,0
1    6681744    rs3747994    C    T    1022.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495385    GT:AD:DP:GQ:PL    1/1:0,28:28:78.23:1055,78,0
1    6690140    rs742394    A    G    89.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349363    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:122,12,0
1    6693876    rs11583890    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294401    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    6694927    rs2294532    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294401    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    6695802    rs6577583    A    G    1213.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.24;MQ0=0;QD=29.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472414    GT:AD:DP:GQ:PL    1/1:0,41:41:93.30:1247,93,0
1    6704635    rs200458    A    G    1201.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_AMINO_ACID_CHANGE=G270;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_6704618_6704734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377573    GT:AD:DP:GQ:PL    1/1:0,35:35:96.28:1235,96,0
1    6713114    rs2235564    C    T    596.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=37.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460594    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:629,48,0
1    6727925    rs114473801    C    T    105.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.866;QD=10.59;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465911    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,168
1    7202190    rs970973    T    C    673.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    1/1:0,23:23:51.17:706,51,0
1    7527838    rs182018941    C    T    1030.01    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=3.05;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.68;MQ0=0;MQRankSum=-0.594;QD=17.76;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:23,35:58:99:1060,0,700
1    7700352    rs4072987    G    C    56.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=5.66;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:4,6:10:86.57:87,0,121
1    7700353    rs34766132    G    A    56.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=5.66;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:4,6:10:86.57:87,0,144
1    7700674    rs12743421    C    T    92.20    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=6.59;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:10,4:14:99:122,0,277
1    7723534    rs3737907    G    A    709.40    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.403;DB;DP=61;Dels=0.0;FS=5.855;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.438;QD=11.63;ReadPosRankSum=-1.242;SNPEFF_AMINO_ACID_CHANGE=S309;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_7723413_7725259;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:33,28:61:99:739,0,949
1    7723957    rs12128526    G    A    481.27    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.49;DB;DP=54;Dels=0.0;FS=2.45;HRun=0;HaplotypeScore=1.4538;MQ=59.14;MQ0=0;MQRankSum=-1.666;QD=8.91;ReadPosRankSum=1.354;SNPEFF_AMINO_ACID_CHANGE=S450;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_7723413_7725259;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:33,21:54:99:511,0,869
1    7725122    .    G    A    377.21    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DP=36;Dels=0.0;FS=8.481;HRun=0;HaplotypeScore=1.9681;MQ=59.48;MQ0=0;MQRankSum=-0.795;QD=10.48;ReadPosRankSum=-0.471;SNPEFF_AMINO_ACID_CHANGE=G839R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_7723413_7725259;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:22,14:36:99:407,0,671
1    7730879    rs72853807    C    T    496.70    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=35;Dels=0.0;FS=6.41;HRun=0;HaplotypeScore=0.0;MQ=57.44;MQ0=0;MQRankSum=-0.116;QD=14.19;ReadPosRankSum=1.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:17,18:35:99:527,0,576
1    7737651    rs41278946    G    A    1877.48    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.128;DB;DP=121;Dels=0.0;FS=8.483;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.757;QD=15.52;ReadPosRankSum=1.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:55,66:121:99:1907,0,1533
1    7737799    rs3011926    A    G    326.91    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=13.62;ReadPosRankSum=-0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:11,13:24:99:357,0,386
1    7797734    rs1417986    T    A    66.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.55;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:3,4:7:96.85:97,0,100
1    7805208    rs2071986    G    T    31.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.32;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:4,2:6:61.90:62,0,141
1    7807897    rs12133253    A    G    696.10    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=43;Dels=0.0;FS=6.338;HRun=1;HaplotypeScore=0.8941;MQ=59.61;MQ0=0;MQRankSum=0.816;QD=16.19;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:16,27:43:99:726,0,523
1    7811014    rs1573753    G    A    71.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.87;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:3,3:6:97.54:101,0,98
1    7811215    rs10779689    A    G    2682.44    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-9.091;DB;DP=230;Dels=0.0;FS=3.217;HRun=1;HaplotypeScore=2.3002;MQ=59.3;MQ0=0;MQRankSum=0.5;QD=11.66;ReadPosRankSum=2.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:122,108:230:99:2712,0,3943
1    7812398    rs9919223    A    G    140.27    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=10.79;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:6,7:13:99:170,0,193
1    7815554    rs12408963    G    A    409.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.171;QD=22.74;ReadPosRankSum=1.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    0/1:6,12:18:99:439,0,162
1    7826347    rs697672    C    T    161.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303635    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
1    7833485    rs11576572    G    A    702.91    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.25;DB;DP=49;Dels=0.0;FS=9.329;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.29;QD=14.35;ReadPosRankSum=0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000054666    GT:AD:DP:GQ:PL    0/1:25,24:49:99:733,0,728
1    7845695    rs228729    T    C    442.29    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.068;DB;DP=25;Dels=0.0;FS=2.054;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=17.69;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000054666    GT:AD:DP:GQ:PL    0/1:11,14:25:99:472,0,287
1    7847362    rs35115980    C    CT    257.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=16.2136;IndelType=I;MQ=61.34;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:300,24,0
1    7847529    rs2859390    A    G    337.56    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.335;DB;DP=30;Dels=0.0;FS=14.824;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.088;QD=11.25;ReadPosRankSum=-1.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:17,13:30:99:368,0,624
1    7847614    rs697685    G    A    118.31    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.201;DB;DP=19;Dels=0.0;FS=5.006;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=6.23;ReadPosRankSum=-2.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:13,6:19:99:148,0,503
1    7858925    rs228686    T    C    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
1    7861153    rs34433622    C    CT    1221.63    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.743;DB;DP=69;FS=0.0;HRun=3;HaplotypeScore=156.9027;IndelType=I;MQ=60.31;MQ0=0;MQRankSum=-1.902;QD=17.7;ReadPosRankSum=0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:34,35:69:99:1261,0,1017
1    7861304    rs707465    T    C    856.24    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.66;DB;DP=55;Dels=0.0;FS=8.814;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.162;QD=15.57;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:23,32:55:99:886,0,760
1    7861345    rs488728    G    A    248.96    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.916;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.132;QD=9.58;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:17,9:26:99:279,0,612
1    7863051    rs72632072    A    T    767.07    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.448;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.498;MQ=58.92;MQ0=0;MQRankSum=-0.868;QD=17.84;ReadPosRankSum=-0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:17,26:43:99:797,0,541
1    7863293    rs228642    C    T    283.72    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=3.084;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=1.357;QD=10.51;ReadPosRankSum=-1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:16,11:27:99:314,0,422
1    7869915    rs228668    G    C    408    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:441,33,0
1    7870048    rs228669    T    C    1268.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=S445;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_7869953_7870081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1301,102,0
1    7870144    rs228670    A    C    1162.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    1/1:0,34:34:87.29:1196,87,0
1    7880469    rs228691    A    G    337.55    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=21.1;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:6,10:16:99:368,0,182
1    7887248    rs2859387    G    A    375.20    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=1.262;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.893;QD=9.15;ReadPosRankSum=0.865;SNPEFF_AMINO_ACID_CHANGE=P745;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_7887178_7887875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:26,15:41:99:405,0,699
1    7887493    rs228696    T    C    3130.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.73;MQ0=0;QD=36.4;SNPEFF_AMINO_ACID_CHANGE=L38P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_7887178_7887875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539773    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3164,241,0
1    7887926    rs11590657    A    G    236.76    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.454;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=58.9;MQ0=0;MQRankSum=0.144;QD=13.93;ReadPosRankSum=0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:9,8:17:99:267,0,308
1    7889804    rs228701    C    G    68.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=7.56;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:6,3:9:98.02:98,0,226
1    7889941    rs2640908    C    T    976.56    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=70;Dels=0.0;FS=0.936;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=13.95;ReadPosRankSum=-0.378;SNPEFF_AMINO_ACID_CHANGE=T180;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_7889897_7890011;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539773    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1007,0,955
1    7889972    .    GAGAATCCATCCCATCCTACTGCCAGCGCTCTGTCCACAGGATCGCCTCCCATGA    G    437.90    PASS    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DP=68;FS=2.158;HRun=0;HaplotypeScore=2530.7739;IndelType=D;MQ=61.11;MQ0=0;MQRankSum=3.183;QD=6.44;ReadPosRankSum=-0.405;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000539773    GT:AD:DP:GQ:PL    0/1:61,7:68:99:477,0,445
1    7890064    rs12023156    A    G    992.39    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.107;DB;DP=62;Dels=0.0;FS=0.997;HRun=2;HaplotypeScore=0.734;MQ=61.21;MQ0=0;MQRankSum=-1.334;QD=16.01;ReadPosRankSum=2.968;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000539773    GT:AD:DP:GQ:PL    0/1:26,36:62:99:1022,0,820
1    7890264    rs1773135    A    G    440.32    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.312;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-1.396;QD=17.61;ReadPosRankSum=-0.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:11,14:25:99:470,0,353
1    7906476    rs172932    G    T    1729.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=59.55;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1763,129,0
1    7907007    rs697694    G    A    68.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.727;QD=11.45;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:2,4:6:28.61:99,0,29
1    7907805    rs112820691    C    CT    1477.89    PASS    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.776;DB;DP=79;FS=0.864;HRun=1;HaplotypeScore=175.7587;IndelType=I;MQ=59.54;MQ0=0;MQRankSum=2.109;QD=18.71;ReadPosRankSum=-0.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1517,0,1280
1    7907971    rs707473    C    A    82.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=1.7552;MQ=54.85;MQ0=0;MQRankSum=-0.71;QD=5.86;ReadPosRankSum=-0.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361923    GT:AD:DP:GQ:PL    0/1:8,6:14:99:112,0,250
1    7913430    rs228648    G    A    1304.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=35.27;SNPEFF_AMINO_ACID_CHANGE=T21M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_7913367_7913491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000054668    GT:AD:DP:GQ:PL    1/1:1,36:37:99:1338,99,0
1    7913590    rs11121035    C    T    437.95    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.551;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=19.04;ReadPosRankSum=0.157;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000054668    GT:AD:DP:GQ:PL    0/1:9,14:23:99:468,0,290
1    7995033    rs9657980    A    G    213.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=18;Dels=0.0;FS=1.952;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=11.87;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377507    GT:AD:DP:GQ:PL    0/1:8,10:18:99:244,0,241
1    7998963    rs226476    T    G    1036.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377507    GT:AD:DP:GQ:PL    1/1:0,28:28:81.18:1069,81,0
1    8384268    rs6702047    T    C    400.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-1.738;QD=33.42;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377479    GT:AD:DP:GQ:PL    1/1:1,11:12:33.11:434,33,0
1    8390051    rs1473496    G    A    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289877    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
1    8390495    rs1058619    A    G    727.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=25.09;SNPEFF_AMINO_ACID_CHANGE=P314;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_8390269_8390996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289877    GT:AD:DP:GQ:PL    1/1:0,29:29:63.16:761,63,0
1    8390888    rs2289731    G    A    590.91    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.384;DB;DP=43;Dels=0.0;FS=5.368;HRun=1;HaplotypeScore=1.97;MQ=59.03;MQ0=0;MQRankSum=1.235;QD=13.74;ReadPosRankSum=1.308;SNPEFF_AMINO_ACID_CHANGE=P445;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_8390269_8390996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289877    GT:AD:DP:GQ:PL    0/1:24,19:43:99:621,0,641
1    8395441    rs2305016    T    C    223.74    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.811;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1968;MQ=60.0;MQ0=0;MQRankSum=-0.906;QD=12.43;ReadPosRankSum=-0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289877    GT:AD:DP:GQ:PL    0/1:7,11:18:99:254,0,234
1    8404093    rs1055236    C    T    759.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497660    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:793,57,0
1    8404169    rs6685844    T    A    135.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497660    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
1    8424029    rs12118524    G    A    114.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.33;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460659    GT:AD:DP:GQ:PL    0/1:3,4:7:85.39:144,0,85
1    8525913    .    A    G    413.28    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.823;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=14.76;ReadPosRankSum=0.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337907    GT:AD:DP:GQ:PL    0/1:13,15:28:99:443,0,444
1    8526142    rs4908760    G    A    416.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=37.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337907    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:450,33,0
1    8557320    rs7518608    C    G    110.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337907    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
1    8557691    rs7530745    A    C    358.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337907    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:392,30,0
1    8616838    rs1473420    T    G    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337907    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    8715828    rs151112003    CAA    C    181.73    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=24.7526;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.684;QD=22.72;ReadPosRankSum=-0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468247    GT:AD:DP:GQ:PL    0/1:3,5:8:99:221,0,159
1    8716543    rs3737670    G    C    1044.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337907    GT:AD:DP:GQ:PL    1/1:0,27:27:81.24:1078,81,0
1    8924282    rs1543711    A    G    693.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464594    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:727,54,0
1    8928125    rs2071412    G    T    5284.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.84;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463324    GT:AD:DP:GQ:PL    1/1:0,146:146:99:5285,400,0
1    8930369    rs2781060    T    C    158.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463324    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:191,15,0
1    8930385    rs2765511    G    A    204.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463324    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:237,18,0
1    8930606    rs56193077    C    G    217.29    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.164;QD=13.58;ReadPosRankSum=1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463324    GT:AD:DP:GQ:PL    0/1:9,7:16:99:247,0,249
1    8935149    rs2038904    A    G    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234590    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    9017091    rs2274332    C    T    31.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480186    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
1    9031263    .    G    A    48.57    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475703    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    9034421    rs3765964    G    A    140.26    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=57.63;MQ0=0;MQRankSum=-1.067;QD=17.53;ReadPosRankSum=0.572;SNPEFF_AMINO_ACID_CHANGE=G287E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_9034406_9034503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377436    GT:AD:DP:GQ:PL    0/1:2,6:8:62.40:170,0,62
1    9034598    rs3765963    A    G    193.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.299;QD=13.85;ReadPosRankSum=1.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377436    GT:AD:DP:GQ:PL    0/1:7,7:14:99:224,0,229
1    9064609    rs111448504    AG    A    317.97    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=13;FS=8.129;HRun=4;HaplotypeScore=34.7107;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.678;QD=24.46;ReadPosRankSum=-0.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400906    GT:AD:DP:GQ:PL    0/1:2,11:13:44.96:357,0,45
1    9067142    rs6672506    G    A    129.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400906    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
1    9084924    rs2027222    T    C    187.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.572;QD=23.45;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400906    GT:AD:DP:GQ:PL    0/1:2,6:8:50.28:218,0,50
1    9305445    rs34603401    A    C    980.41    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=4.262;DB;DP=64;Dels=0.0;FS=9.099;HRun=1;HaplotypeScore=3.2336;MQ=59.64;MQ0=0;MQRankSum=-1.093;QD=15.32;ReadPosRankSum=-0.644;SNPEFF_AMINO_ACID_CHANGE=D151A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_9304984_9305620;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H6PD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377403    GT:AD:DP:GQ:PL    0/1:28,34:64:99:1010,0,858
1    9306849    rs2310925    T    C    159.12    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.52;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H6PD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377403    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:189,0,23
1    9307033    rs7524046    G    A    850.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.509;DB;DP=62;Dels=0.0;FS=2.1;HRun=0;HaplotypeScore=0.7887;MQ=59.63;MQ0=0;MQRankSum=1.257;QD=13.72;ReadPosRankSum=-0.902;SNPEFF_AMINO_ACID_CHANGE=A212;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_9307025_9307142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H6PD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377403    GT:AD:DP:GQ:PL    0/1:31,31:62:99:881,0,810
1    9307138    rs11121350    T    C    489.83    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.25;DB;DP=41;Dels=0.0;FS=5.108;HRun=1;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=1.138;QD=11.95;ReadPosRankSum=-2.465;SNPEFF_AMINO_ACID_CHANGE=A247;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_9307025_9307142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H6PD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377403    GT:AD:DP:GQ:PL    0/1:20,21:41:99:520,0,495
1    9307230    rs12032814    T    A    93.89    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=7.82;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H6PD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377403    GT:AD:DP:GQ:PL    0/1:7,5:12:99:124,0,255
1    9323910    rs6688832    G    A    872.88    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.139;DB;DP=52;Dels=0.0;FS=1.225;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=16.79;ReadPosRankSum=-0.817;SNPEFF_AMINO_ACID_CHANGE=R453Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_9323568_9331396;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H6PD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377403    GT:AD:DP:GQ:PL    0/1:24,28:52:99:903,0,729
1    9416346    rs3795309    C    T    395.18    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.68;QD=13.17;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=L132;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_9415802_9416644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPSB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328089    GT:AD:DP:GQ:PL    0/1:17,13:30:99:425,0,508
1    9627563    rs146265200    T    C    88.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302692    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    9658465    rs9430181    T    G    423.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;QD=26.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340305    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:456,36,0
1    9658707    rs9430182    G    A    480.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340305    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:514,39,0
1    9661061    rs9430184    A    G    300.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340305    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:333,27,0
1    9670483    rs4244632    T    A    880.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=38.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510900    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:914,69,0
1    9670834    rs4926472    C    T    122.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.5;SNPEFF_AMINO_ACID_CHANGE=P555L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_9670564_9670863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM201;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377376    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
1    9770690    rs34885574    CAG    C    146.32    PASS    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=3.004;DB;DP=52;FS=3.647;HRun=0;HaplotypeScore=181.9435;IndelType=D;MQ=59.85;MQ0=0;MQRankSum=0.945;QD=2.81;ReadPosRankSum=-0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360563    GT:AD:DP:GQ:PL    0/1:44,8:52:99:185,0,1067
1    9777451    rs34287026    G    GGA    239.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=10.6458;IndelType=I;MQ=60.0;MQ0=0;QD=47.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481137    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:281,15,0
1    9777599    rs61755420    C    G    62.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.669;DB;DP=18;Dels=0.0;FS=9.901;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=3.46;ReadPosRankSum=-1.452;SNPEFF_AMINO_ACID_CHANGE=S277C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_9777595_9777684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360563    GT:AD:DP:GQ:PL    0/1:12,6:18:92.26:92,0,416
1    9781412    rs12735071    C    G    771.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479223    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:805,66,0
1    9782556    rs11589267    C    T    1204.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479223    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1238,93,0
1    9790995    rs10779729    A    G    31.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360563    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
1    9816620    rs6680090    T    C    1142.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361311    GT:AD:DP:GQ:PL    1/1:0,36:36:96.28:1175,96,0
1    10335315    rs6685773    G    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263934    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    10357206    rs58344165    AT    A    113.66    QDFilter2    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.033;DB;DP=98;FS=1.209;HRun=17;HaplotypeScore=589.8898;IndelType=D;MQ=54.63;MQ0=0;MQRankSum=1.563;QD=1.16;ReadPosRankSum=-0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497835    GT:AD:DP:GQ:PL    0/1:61,26:98:99:153,0,763
1    10435444    .    G    T    774.47    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=2.745;DP=52;Dels=0.0;FS=1.47;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.792;QD=14.89;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263934    GT:AD:DP:GQ:PL    0/1:23,29:52:99:804,0,673
1    10502307    rs113274432    AT    A    2044.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=87;FS=0.0;HRun=10;HaplotypeScore=308.4834;IndelType=D;MQ=59.95;MQ0=0;MQRankSum=1.69;QD=23.5;ReadPosRankSum=0.856;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APITD1-CORT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400900    GT:AD:DP:GQ:PL    1/1:4,82:87:99:2087,219,0
1    10511544    rs628462    C    T    390.17    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.61;DB;DP=36;Dels=0.0;FS=3.018;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=10.84;ReadPosRankSum=-1.348;SNPEFF_AMINO_ACID_CHANGE=A120;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_10511434_10511955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320498    GT:AD:DP:GQ:PL    0/1:21,15:36:99:420,0,673
1    10511589    rs666103    T    C    599.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_AMINO_ACID_CHANGE=S135;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_10511434_10511955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320498    GT:AD:DP:GQ:PL    1/1:0,21:21:54.12:633,54,0
1    10523728    .    CT    C    167.67    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DP=32;FS=0.0;HRun=12;HaplotypeScore=116.8758;IndelType=D;MQ=57.05;MQ0=0;MQRankSum=-0.26;QD=5.24;ReadPosRankSum=2.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377036    GT:AD:DP:GQ:PL    0/1:20,12:32:99:207,0,277
1    10529194    rs2781233    T    C    452.76    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.561;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.482;QD=14.15;ReadPosRankSum=-1.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377036    GT:AD:DP:GQ:PL    0/1:17,15:32:99:483,0,484
1    10555257    rs622623    C    T    643.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356607    GT:AD:DP:GQ:PL    1/1:0,20:20:51.15:677,51,0
1    10596341    rs12375    C    T    689.99    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.503;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=14.68;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=F52;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_10596270_10596354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PEX14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356607    GT:AD:DP:GQ:PL    0/1:21,26:47:99:720,0,631
1    10596388    rs2480779    A    G    915.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492696    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:948,69,0
1    10596530    rs2480778    A    G    81.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492696    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
1    10689942    rs11539794    G    T    577.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=G280;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_10689588_10690372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PEX14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538836    GT:AD:DP:GQ:PL    1/1:1,17:18:48.15:610,48,0
1    11080723    rs79500514    T    TG    370.24    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=47.0884;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=-0.46;QD=16.1;ReadPosRankSum=0.525;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TARDBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472476    GT:AD:DP:GQ:PL    0/1:12,11:23:99:409,0,343
1    11082054    rs3835416    AG    A    191.83    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=16.612;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=27.4;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400897    GT:AD:DP:GQ:PL    0/1:1,6:7:26.94:231,0,27
1    11086097    rs3215616    A    AT    1028.29    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.515;DB;DP=67;FS=3.573;HRun=1;HaplotypeScore=148.0073;IndelType=I;MQ=59.47;MQ0=0;MQRankSum=0.643;QD=15.35;ReadPosRankSum=1.089;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400897    GT:AD:DP:GQ:PL    0/1:39,28:67:99:1067,0,1210
1    11086332    rs2273347    A    G    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400897    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    11087524    rs1782455    G    A    1190.96    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=3.763;DB;DP=95;Dels=0.0;FS=6.745;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.151;QD=12.54;ReadPosRankSum=-0.181;SNPEFF_AMINO_ACID_CHANGE=S493;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11086580_11087705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400897    GT:AD:DP:GQ:PL    0/1:52,43:95:99:1221,0,1489
1    11090916    rs12711521    C    A    372.17    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.812;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.302;QD=12.83;ReadPosRankSum=0.812;SNPEFF_AMINO_ACID_CHANGE=D371Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11090805_11090939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400897    GT:AD:DP:GQ:PL    0/1:17,12:29:99:402,0,576
1    11105106    rs2273345    C    T    39.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=9.82;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400897    GT:AD:DP:GQ:PL    0/1:2,2:4:55.89:69,0,56
1    11105122    rs2273344    C    T    40.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=10.0;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400897    GT:AD:DP:GQ:PL    0/1:2,2:4:27.10:70,0,27
1    11119135    rs743577    G    A    199.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.0;QD=14.23;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376957    GT:AD:DP:GQ:PL    0/1:6,8:14:99:229,0,160
1    11119899    rs7545802    T    C    266.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.66;SNPEFF_AMINO_ACID_CHANGE=S34;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11119834_11120081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376957    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:300,24,0
1    11126941    rs6701726    C    T    168.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=12.06;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469634    GT:AD:DP:GQ:PL    0/1:6,8:14:99:199,0,170
1    11128001    rs2791657    A    G    47.74    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.243;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=2.98;ReadPosRankSum=0.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469634    GT:AD:DP:GQ:PL    0/1:12,4:16:77.74:78,0,393
1    11128654    rs2791655    G    A    392.96    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=2.801;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.203;QD=9.58;ReadPosRankSum=0.961;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469634    GT:AD:DP:GQ:PL    0/1:26,15:41:99:423,0,808
1    11129434    rs2748878    T    C    506.45    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=2.134;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.14;MQ0=0;MQRankSum=1.431;QD=18.76;ReadPosRankSum=0.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470611    GT:AD:DP:GQ:PL    0/1:10,17:27:99:536,0,287
1    11129437    rs2748877    T    C    512.63    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=1.88;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.28;MQ0=0;MQRankSum=1.045;QD=16.02;ReadPosRankSum=1.121;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470611    GT:AD:DP:GQ:PL    0/1:14,18:32:99:543,0,414
1    11129848    rs2791653    A    G    1563.59    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=4.59;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5101;MQ=59.75;MQ0=0;MQRankSum=-0.647;QD=16.81;ReadPosRankSum=-1.838;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470611    GT:AD:DP:GQ:PL    0/1:42,50:93:99:1594,0,1190
1    11132217    rs1130683    G    A    1254.13    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.287;DB;DP=76;Dels=0.0;FS=14.998;HRun=1;HaplotypeScore=1.4679;MQ=59.39;MQ0=0;MQRankSum=-0.921;QD=16.5;ReadPosRankSum=-0.242;SNPEFF_AMINO_ACID_CHANGE=R698;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11132144_11132228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304457    GT:AD:DP:GQ:PL    0/1:28,48:76:99:1284,0,842
1    11134157    rs2748876    T    G    103.86    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.989;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.999;MQ=60.0;MQ0=0;MQRankSum=-0.906;QD=5.47;ReadPosRankSum=-0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470611    GT:AD:DP:GQ:PL    0/1:12,7:19:99:134,0,406
1    11137778    rs2259886    C    T    280.84    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.419;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.076;QD=14.04;ReadPosRankSum=-0.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472078    GT:AD:DP:GQ:PL    0/1:9,11:20:99:311,0,234
1    11140621    rs58972264    ACACAC    A    524.23    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=2.978;DB;DP=30;FS=2.378;HRun=0;HaplotypeScore=221.097;IndelType=D;MQ=51.42;MQ0=0;MQRankSum=0.87;QD=17.47;ReadPosRankSum=1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485606    GT:AD:DP:GQ:PL    0/1:17,10:30:99:563,0,256
1    11141187    rs2258621    C    G    571.99    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.436;DB;DP=52;Dels=0.0;FS=2.605;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.456;QD=11.0;ReadPosRankSum=0.831;SNPEFF_AMINO_ACID_CHANGE=P463;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11141139_11141295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304457    GT:AD:DP:GQ:PL    0/1:29,22:52:99:602,0,883
1    11150754    rs113194852    C    T    480.63    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.858;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.197;QD=12.65;ReadPosRankSum=-3.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460196    GT:AD:DP:GQ:PL    0/1:22,16:38:99:511,0,747
1    11181327    rs11121691    C    T    618.48    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.304;QD=19.33;ReadPosRankSum=0.912;SNPEFF_AMINO_ACID_CHANGE=L2303;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11181303_11181425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:12,20:32:99:648,0,403
1    11187893    rs1770344    T    C    3473.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495435    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3473,259,0
1    11190646    rs2275527    G    A    366.52    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.397;DB;DP=35;Dels=0.0;FS=5.76;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.121;QD=10.47;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=S1851;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11190586_11190834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:17,18:35:99:397,0,453
1    11205058    rs1057079    C    T    995.35    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=1.823;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.343;MQ=59.73;MQ0=0;MQRankSum=-0.113;QD=11.57;ReadPosRankSum=-1.055;SNPEFF_AMINO_ACID_CHANGE=A1577;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11205025_11205102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:49,37:86:99:1025,0,1334
1    11288618    rs4845985    G    A    203.71    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=17;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;MQRankSum=0.318;QD=11.98;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:9,8:17:99:234,0,309
1    11288633    rs4845986    G    C    217.42    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.127;DB;DP=21;Dels=0.0;FS=5.454;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.076;QD=10.35;ReadPosRankSum=1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:11,10:21:99:247,0,342
1    11288758    rs1064261    G    A    218.25    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=6.82;ReadPosRankSum=-0.196;SNPEFF_AMINO_ACID_CHANGE=N999;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11288725_11288975;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:23,9:32:99:248,0,658
1    11289161    rs2076655    G    A    113.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.87;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:2,4:6:68.52:143,0,69
1    11292666    rs10864495    T    A    183.34    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=11.46;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:9,7:16:99:213,0,317
1    11293200    rs7541998    C    T    525.65    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.874;DB;DP=45;Dels=0.0;FS=2.837;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.613;QD=11.68;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:22,23:45:99:556,0,638
1    11293959    rs11121704    C    T    65.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=10.84;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:3,3:6:95.06:95,0,107
1    11294474    rs718206    T    A    169.27    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.577;MQ=60.0;MQ0=0;MQRankSum=1.493;QD=12.09;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:6,7:14:99:199,0,219
1    11301714    rs1135172    A    G    1377.62    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.097;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.25;MQ0=0;MQRankSum=0.486;QD=15.83;ReadPosRankSum=-0.617;SNPEFF_AMINO_ACID_CHANGE=D479;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11301610_11301738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:37,50:87:99:1408,0,1056
1    11318763    rs2076657    C    G    116.23    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=16.6;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:2,5:7:59.05:146,0,59
1    11319587    rs4845988    A    G    205.50    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.271;QD=20.55;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361445    GT:AD:DP:GQ:PL    0/1:2,8:10:58.15:235,0,58
1    11562276    rs2076465    C    T    214.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
1    11574366    rs10864515    C    G    673.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:707,51,0
1    11575260    rs17036947    G    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    11575331    rs41274530    A    G    359.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:393,30,0
1    11579344    rs2072995    G    A    1594.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1628,126,0
1    11579504    rs2072993    G    C    2437.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=30.86;SNPEFF_AMINO_ACID_CHANGE=G661A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11579412_11579560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2471,211,0
1    11584164    rs2076469    A    G    336.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:369,30,0
1    11586585    rs2817636    C    G    1058.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:0,35:35:93.25:1091,93,0
1    11586677    rs2745260    T    C    3553.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3554,280,0
1    11589449    rs2817630    A    T    63.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.06;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    0/1:4,3:7:93.40:93,0,139
1    11589911    rs2076468    G    A    508.89    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=39;Dels=0.0;FS=7.476;HRun=0;HaplotypeScore=2.5975;MQ=60.0;MQ0=0;MQRankSum=1.33;QD=13.05;ReadPosRankSum=-0.219;SNPEFF_AMINO_ACID_CHANGE=P999;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11589844_11590016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    0/1:20,18:39:99:539,0,591
1    11590776    rs2244401    T    A    61.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.453;QD=6.11;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    0/1:5,5:10:91.12:91,0,177
1    11590778    rs2244400    T    A    58.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.098;QD=5.86;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    0/1:5,5:10:88.58:89,0,175
1    11590919    rs2244397    C    A    1062.52    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.6;QD=15.18;ReadPosRankSum=1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1093,0,1080
1    11593793    rs113116961    T    TGCACACACGCAC    1197.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=67.584;IndelType=I;MQ=49.71;MQ0=0;QD=119.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:2,4:10:27.09:1239,27,0
1    11594400    rs2235663    T    C    989.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    1/1:0,28:28:81.25:1023,81,0
1    11595802    rs2243838    C    T    154.68    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.811;QD=11.9;ReadPosRankSum=-2.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294484    GT:AD:DP:GQ:PL    0/1:7,6:13:99:185,0,239
1    11708736    rs1055547    T    C    123.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.5;MQ0=0;MQRankSum=0.194;QD=8.24;ReadPosRankSum=-2.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452872    GT:AD:DP:GQ:PL    0/1:9,6:15:99:154,0,202
1    11710561    rs9614    T    G    316.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.81;SNPEFF_AMINO_ACID_CHANGE=K118T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11710523_11710891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354287    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:350,30,0
1    11718195    rs3125816    A    G    58.38    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=3.89;ReadPosRankSum=-0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251546    GT:AD:DP:GQ:PL    0/1:11,4:15:88.37:88,0,390
1    11735377    rs2272982    G    C    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376753    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
1    11735652    rs2233025    G    A    672.44    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=4.956;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.383;QD=14.01;ReadPosRankSum=1.086;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376753    GT:AD:DP:GQ:PL    0/1:26,22:48:99:702,0,646
1    11735877    rs2233022    A    G    305.78    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.723;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=1.218;QD=9.86;ReadPosRankSum=0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376753    GT:AD:DP:GQ:PL    0/1:20,11:31:99:336,0,718
1    11737051    rs2294638    G    C    491.59    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.708;DB;DP=58;Dels=0.0;FS=7.424;HRun=4;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.269;QD=8.48;ReadPosRankSum=1.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376753    GT:AD:DP:GQ:PL    0/1:37,21:58:99:522,0,958
1    11740329    rs28988268    AGGCGTGAGCCAC    A    1120.15    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.923;DB;DP=25;FS=3.203;HRun=0;HaplotypeScore=289.7178;IndelType=D;MQ=45.04;MQ0=0;MQRankSum=-3.724;QD=44.81;ReadPosRankSum=-0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235310    GT:AD:DP:GQ:PL    0/1:14,11:25:99:1159,0,2118
1    11740358    rs7417320    A    G    510.10    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.385;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.82;MQ0=0;MQRankSum=2.814;QD=12.75;ReadPosRankSum=1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235310    GT:AD:DP:GQ:PL    0/1:18,22:40:99:540,0,491
1    11766889    rs12132907    A    G    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf187;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294485    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
1    11772303    rs1883574    A    G    571.65    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.38;MQ0=0;MQRankSum=1.626;QD=15.45;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf187;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294485    GT:AD:DP:GQ:PL    0/1:19,18:37:99:602,0,603
1    11772491    rs76390929    C    A    784.96    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=46;Dels=0.0;FS=3.57;HRun=1;HaplotypeScore=1.7608;MQ=59.5;MQ0=0;MQRankSum=-0.178;QD=17.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf187;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294485    GT:AD:DP:GQ:PL    0/1:19,27:46:99:815,0,571
1    11772526    rs1883573    A    G    501.46    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=1.877;DB;DP=29;Dels=0.0;FS=2.764;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.9;QD=17.29;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf187;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294485    GT:AD:DP:GQ:PL    0/1:9,20:29:99:531,0,284
1    11804590    rs17875987    T    G    203.56    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.115;DB;DP=32;Dels=0.0;FS=3.645;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.344;QD=6.36;ReadPosRankSum=2.042;SNPEFF_AMINO_ACID_CHANGE=C10G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11804590_11804625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376627    GT:AD:DP:GQ:PL    0/1:21,10:32:99:234,0,521
1    11807426    rs12752700    C    T    557.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.377;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;MQRankSum=0.336;QD=13.93;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494437    GT:AD:DP:GQ:PL    0/1:20,20:40:99:587,0,662
1    11827180    rs6540995    A    G    92.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435090    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:125,12,0
1    11827304    rs6540996    A    G    172.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.62;SNPEFF_AMINO_ACID_CHANGE=P503;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11827278_11827321;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:205,15,0
1    11827355    rs6540997    A    G    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435090    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    11828238    rs4845880    G    A    160.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.11;SNPEFF_AMINO_ACID_CHANGE=R544Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11828134_11828376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    1/1:0,7:8:15.05:194,15,0
1    11828319    rs4845881    G    A    247.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_AMINO_ACID_CHANGE=R571Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11828134_11828376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:281,21,0
1    11831543    rs72638684    C    T    125.90    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=8.99;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435090    GT:AD:DP:GQ:PL    0/1:9,5:14:99:156,0,253
1    11831615    rs6667720    C    T    334.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=R602W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11831581_11831693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
1    11831756    rs6680385    A    G    130.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435090    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
1    11832100    rs11121827    T    A    148.07    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=21.15;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:2,5:7:63.81:178,0,64
1    11832311    rs10779764    G    C    184.13    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=15.34;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=L685;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11832139_11832316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:5,7:12:99:214,0,169
1    11837299    rs4846042    A    C    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    11838696    rs72640210    A    G    42.12    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.27;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484153    GT:AD:DP:GQ:PL    0/1:5,3:8:72.11:72,0,139
1    11838762    rs72640211    G    A    111.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=9.31;ReadPosRankSum=1.186;SNPEFF_AMINO_ACID_CHANGE=L819;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11838717_11838873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:6,6:12:99:142,0,145
1    11838841    rs56001051    A    G    136.03    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.749;QD=11.34;ReadPosRankSum=-1.408;SNPEFF_AMINO_ACID_CHANGE=S846G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11838717_11838873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:6,5:12:99:166,0,213
1    11838848    rs6697244    G    T    169.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.493;QD=13.0;ReadPosRankSum=1.369;SNPEFF_AMINO_ACID_CHANGE=S848I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11838717_11838873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:6,7:13:99:199,0,205
1    11844330    rs10864543    C    T    72.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.14;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=A1059;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11844231_11844650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:3,3:6:60.32:103,0,60
1    11847759    rs3737966    C    T    73.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.7;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376585    GT:AD:DP:GQ:PL    0/1:2,3:5:66.50:103,0,66
1    11847772    rs3820192    G    T    33.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.71;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376585    GT:AD:DP:GQ:PL    0/1:3,2:5:63.53:64,0,110
1    11847902    rs1537515    C    A    212.70    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=11.19;ReadPosRankSum=-1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376585    GT:AD:DP:GQ:PL    0/1:11,8:19:99:243,0,387
1    11848068    rs1537514    G    C    245.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.208;DB;DP=16;Dels=0.0;FS=8.129;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=15.33;ReadPosRankSum=-0.368;SNPEFF_AMINO_ACID_CHANGE=C1295S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11847930_11848104;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:8,8:16:99:275,0,247
1    11848879    rs2077360    A    G    124.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475041    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    11849447    rs868014    A    G    112.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.05;SNPEFF_AMINO_ACID_CHANGE=R1456G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11849327_11849641;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
1    11851003    rs3818762    G    C    569.13    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=0.639;DB;DP=28;Dels=0.0;FS=2.755;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.918;QD=20.33;ReadPosRankSum=-0.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:9,19:28:99:599,0,290
1    11851118    rs7518348    A    G    332    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=27.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:365,33,0
1    11852300    rs1476413    C    T    680.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=69;Dels=0.0;FS=19.248;HRun=1;HaplotypeScore=1.7883;MQ=59.39;MQ0=0;MQRankSum=-0.872;QD=9.86;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:46,23:69:99:710,0,1514
1    11852516    rs17375901    C    T    197.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=24.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433342    GT:AD:DP:GQ:PL    0/1:2,6:8:48.12:228,0,48
1    11854457    rs4846051    G    A    3313.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=F435;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11854415_11854595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376590    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3314,244,0
1    11854476    rs1801131    T    G    1017.32    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=0.397;DB;DP=98;Dels=0.0;FS=12.54;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=10.38;ReadPosRankSum=0.967;SNPEFF_AMINO_ACID_CHANGE=E429A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11854415_11854595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376590    GT:AD:DP:GQ:PL    0/1:58,40:98:99:1047,0,1815
1    11854671    rs12121543    C    A    1295.59    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.406;DB;DP=90;Dels=0.0;FS=12.266;HRun=0;HaplotypeScore=0.9996;MQ=59.79;MQ0=0;MQRankSum=-0.15;QD=14.4;ReadPosRankSum=-1.478;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376583    GT:AD:DP:GQ:PL    0/1:44,46:90:99:1326,0,1448
1    11854755    rs1994798    G    A    1574.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=135;Dels=0.0;FS=4.094;HRun=0;HaplotypeScore=1.6316;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=11.66;ReadPosRankSum=1.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376583    GT:AD:DP:GQ:PL    0/1:75,60:135:99:1605,0,2281
1    11854896    rs2066462    G    A    691.91    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.119;DB;DP=37;Dels=0.0;FS=4.959;HRun=0;HaplotypeScore=1.5317;MQ=59.38;MQ0=0;MQRankSum=-0.256;QD=18.7;ReadPosRankSum=0.051;SNPEFF_AMINO_ACID_CHANGE=S352;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11854786_11854920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376590    GT:AD:DP:GQ:PL    0/1:13,24:37:99:722,0,365
1    11856378    rs1801133    G    A    3189.97    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=223;Dels=0.0;FS=2.386;HRun=0;HaplotypeScore=0.734;MQ=59.79;MQ0=0;MQRankSum=-0.871;QD=14.24;ReadPosRankSum=1.276;SNPEFF_AMINO_ACID_CHANGE=A222V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11856263_11856456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376590    GT:AD:DP:GQ:PL    0/1:106,116:223:99:3220,0,3121
1    11860117    rs13306553    A    G    301.12    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=13.09;ReadPosRankSum=-0.564;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376486    GT:AD:DP:GQ:PL    0/1:7,16:23:99:331,0,224
1    11860120    rs11121832    T    C    675.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376486    GT:AD:DP:GQ:PL    1/1:0,24:24:63.14:708,63,0
1    11862778    rs17367504    A    G    94.18    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.731;QD=18.84;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376486    GT:AD:DP:GQ:PL    0/1:1,4:5:26.19:124,0,26
1    11863057    rs2066470    G    A    500.76    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.945;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.064;QD=9.27;ReadPosRankSum=0.505;SNPEFF_AMINO_ACID_CHANGE=P39;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11862938_11863186;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376590    GT:AD:DP:GQ:PL    0/1:33,21:54:99:531,0,1014
1    11867044    rs3737964    T    C    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:72,6,0
1    11876662    rs17376328    G    A    217.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:251,18,0
1    11879685    rs198393    C    T    169.81    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.482;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.55;MQ0=0;MQRankSum=0.847;QD=10.61;ReadPosRankSum=1.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    0/1:9,7:16:99:200,0,307
1    11879699    rs2050265    A    G    174.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=13.44;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    0/1:7,6:13:99:205,0,248
1    11882632    rs55994631    T    G    109.98    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=9.16;ReadPosRankSum=-1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376497    GT:AD:DP:GQ:PL    0/1:5,7:12:99:140,0,169
1    11883629    rs198399    T    A    33.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.74;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376497    GT:AD:DP:GQ:PL    0/1:3,2:5:63.69:64,0,109
1    11883731    rs12567136    C    T    540.36    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=59.2;MQ0=0;MQRankSum=0.071;QD=18.63;ReadPosRankSum=-0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376497    GT:AD:DP:GQ:PL    0/1:9,20:29:99:570,0,257
1    11883814    rs147832310    C    T    654.89    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=44;Dels=0.0;FS=6.868;HRun=0;HaplotypeScore=1.9578;MQ=58.51;MQ0=0;MQRankSum=-0.483;QD=14.88;ReadPosRankSum=1.072;SNPEFF_AMINO_ACID_CHANGE=G146;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11883764_11883890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376487    GT:AD:DP:GQ:PL    0/1:20,24:44:99:685,0,635
1    11884555    rs198400    A    G    1123.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8561;MQ=59.51;MQ0=0;QD=29.56;SNPEFF_AMINO_ACID_CHANGE=E176G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11884543_11884610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376487    GT:AD:DP:GQ:PL    1/1:0,38:38:90.27:1156,90,0
1    11886383    rs113101975    C    CTG    253.06    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=49.1102;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=-0.295;QD=15.82;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    0/1:10,6:16:99:292,0,353
1    11887303    rs7537765    A    G    305.63    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=17;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=1.575;MQ=58.63;MQ0=0;MQRankSum=1.139;QD=17.98;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    0/1:6,11:17:99:336,0,158
1    11887316    rs41275478    C    A    295.26    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=58.55;MQ0=0;MQRankSum=0.68;QD=18.45;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    0/1:5,11:16:99:325,0,157
1    11887373    rs78178972    T    TG    109.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=6;HaplotypeScore=71.2439;IndelType=I;MQ=57.47;MQ0=0;QD=15.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    1/1:2,5:7:12.03:151,12,0
1    11887382    rs56190030    A    G    131.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:164,12,0
1    11888384    rs198401    A    G    452.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.44;DB;DP=22;Dels=0.0;FS=7.501;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.35;QD=20.57;ReadPosRankSum=1.907;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376490    GT:AD:DP:GQ:PL    0/1:6,15:22:99:482,0,166
1    11889468    rs535107    A    G    308.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=30;Dels=0.0;FS=2.235;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.207;QD=10.29;ReadPosRankSum=-0.913;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376490    GT:AD:DP:GQ:PL    0/1:15,15:30:99:339,0,539
1    11894133    rs41275494    A    G    111.18    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=12.35;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376492    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,134
1    11896856    rs55892892    C    A    34.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494028    GT:AD:DP:GQ:PL    0/1:2,2:4:33.62:64,0,34
1    11897286    rs72640267    G    T    347.92    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.465;DB;DP=30;Dels=0.0;FS=8.759;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.167;QD=11.6;ReadPosRankSum=0.711;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494028    GT:AD:DP:GQ:PL    0/1:17,13:30:99:378,0,571
1    11897592    rs198406    A    G    339.53    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=4.535;DB;DP=32;Dels=0.0;FS=8.479;HRun=1;HaplotypeScore=1.7335;MQ=59.42;MQ0=0;MQRankSum=-0.136;QD=10.61;ReadPosRankSum=-2.316;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494028    GT:AD:DP:GQ:PL    0/1:20,12:32:99:370,0,620
1    11898859    rs55741089    G    A    314.75    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.187;DB;DP=31;Dels=0.0;FS=1.619;HRun=0;HaplotypeScore=1.565;MQ=58.5;MQ0=0;MQRankSum=-1.226;QD=10.15;ReadPosRankSum=-1.06;SNPEFF_AMINO_ACID_CHANGE=A891T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11898592_11899107;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376496    GT:AD:DP:GQ:PL    0/1:16,14:31:99:345,0,489
1    11899033    rs1023252    G    T    381.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=32;Dels=0.0;FS=8.695;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=2.352;QD=11.91;ReadPosRankSum=1.324;SNPEFF_AMINO_ACID_CHANGE=D949Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_11898592_11899107;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376496    GT:AD:DP:GQ:PL    0/1:16,16:32:99:411,0,527
1    11900035    rs198410    G    A    216.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376496    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
1    11905851    rs61764044    A    G    64.58    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=12.92;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:95,0,30
1    11905974    rs5068    A    G    92.91    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.972;DB;DP=19;Dels=0.0;FS=3.299;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.509;QD=4.89;ReadPosRankSum=-1.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    0/1:14,5:19:99:123,0,487
1    11906960    rs198369    T    C    162.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=55.62;MQ0=0;MQRankSum=-1.036;QD=16.27;ReadPosRankSum=-2.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312413    GT:AD:DP:GQ:PL    0/1:4,6:10:99:193,0,140
1    11917620    rs35458601    T    TA    103.15    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=14;FS=3.123;HRun=7;HaplotypeScore=36.0598;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=7.37;ReadPosRankSum=1.092;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474547    GT:AD:DP:GQ:PL    0/1:9,5:14:99:142,0,192
1    12052405    rs6675934    G    A    122.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484391    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
1    12091210    rs946461    T    C    33.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.38;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478749    GT:AD:DP:GQ:PL    0/1:2,2:4:63.52:64,0,73
1    12144662    rs11569821    T    A    349.32    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.035;QD=16.63;ReadPosRankSum=-1.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263932    GT:AD:DP:GQ:PL    0/1:10,11:21:99:379,0,329
1    12144667    rs11569822    C    T    258.29    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.245;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=13.59;ReadPosRankSum=-1.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263932    GT:AD:DP:GQ:PL    0/1:9,10:19:99:288,0,263
1    12164437    rs2230622    C    T    437.51    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.727;DB;DP=42;Dels=0.0;FS=2.909;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=10.42;ReadPosRankSum=-1.242;SNPEFF_AMINO_ACID_CHANGE=D90;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12164436_12164588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263932    GT:AD:DP:GQ:PL    0/1:25,17:42:99:468,0,654
1    12175729    rs1763642    C    T    1959.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=R186C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12175634_12175786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417814    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1993,150,0
1    12249031    rs1201157    A    G    330.98    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=30.09;ReadPosRankSum=0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376259    GT:AD:DP:GQ:PL    0/1:1,10:11:8.13:361,0,8
1    12267199    .    A    G    75.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.97;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492361    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:106,0,30
1    12267265    rs1061624    A    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492361    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    12401868    rs28551666    A    C    3057.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=P2861;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12401837_12401942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356315    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3090,232,0
1    12408900    .    G    A    839.44    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.945;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.56;MQ0=0;MQRankSum=1.33;QD=15.84;ReadPosRankSum=-1.844;SNPEFF_AMINO_ACID_CHANGE=V3005;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12408880_12409030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356315    GT:AD:DP:GQ:PL    0/1:20,33:53:99:869,0,586
1    12418700    rs10864552    T    C    789.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=28.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356315    GT:AD:DP:GQ:PL    1/1:0,28:28:66.19:823,66,0
1    12567232    rs7554257    A    G    1104.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=36.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473099    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1137,87,0
1    12628637    rs4240900    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376223    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    12638964    rs2275875    T    C    107.04    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DB;DP=20;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.866;QD=5.35;ReadPosRankSum=0.454;SNPEFF_AMINO_ACID_CHANGE=P160;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12638746_12638984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376223    GT:AD:DP:GQ:PL    0/1:14,6:20:99:137,0,438
1    12639018    rs2275874    C    T    41.59    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.864;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=2.45;ReadPosRankSum=-1.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482265    GT:AD:DP:GQ:PL    0/1:13,4:17:71.58:72,0,332
1    12639596    rs2358737    C    T    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482265    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    12776218    rs3000860    A    C    179.57    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=13.81;ReadPosRankSum=-0.935;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_12776118_12776347;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADACL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332530    GT:AD:DP:GQ:PL    0/1:7,6:13:99:210,0,246
1    12776344    rs3000859    A    T    512.94    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.542;DB;DP=44;Dels=0.0;FS=1.147;HRun=1;HaplotypeScore=1.9992;MQ=59.58;MQ0=0;MQRankSum=0.126;QD=11.66;ReadPosRankSum=-2.325;SNPEFF_AMINO_ACID_CHANGE=M1L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_START;SNPEFF_EXON_ID=exon_1_12776118_12776347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADACL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332530    GT:AD:DP:GQ:PL    0/1:24,19:44:99:543,0,749
1    12779560    rs3010876    T    C    3710.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.386;DB;DP=119;Dels=0.0;FS=2.888;HRun=3;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=-1.115;QD=31.18;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=D27;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12779477_12779693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADACL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359318    GT:AD:DP:GQ:PL    1/1:2,117:119:99:3710,223,0
1    12779618    rs3010877    T    C    2367.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7825;MQ=58.6;MQ0=0;MQRankSum=-0.233;QD=33.82;ReadPosRankSum=-1.215;SNPEFF_AMINO_ACID_CHANGE=S47P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12779477_12779693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADACL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359318    GT:AD:DP:GQ:PL    1/1:1,69:70:99:2400,147,0
1    12785093    rs4361998    T    G    482.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADACL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332530    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:515,39,0
1    12785494    rs7513079    G    T    1274.85    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.771;DB;DP=96;Dels=0.0;FS=4.114;HRun=7;HaplotypeScore=3.8308;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=13.28;ReadPosRankSum=-0.916;SNPEFF_AMINO_ACID_CHANGE=C125F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12785189_12788726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADACL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332530    GT:AD:DP:GQ:PL    0/1:46,49:96:99:1305,0,1437
1    12785749    rs11121969    C    T    732.63    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.652;DB;DP=52;Dels=0.0;FS=2.453;HRun=0;HaplotypeScore=1.9832;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=14.09;ReadPosRankSum=1.661;SNPEFF_AMINO_ACID_CHANGE=P210L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12785189_12788726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADACL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332530    GT:AD:DP:GQ:PL    0/1:28,24:52:99:763,0,830
1    12786070    rs3000930    A    G    64.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.684;QD=8.07;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADACL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359318    GT:AD:DP:GQ:PL    0/1:5,3:8:94.56:95,0,182
1    12819063    rs3795746    A    T    414.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.469;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.977;QD=19.73;ReadPosRankSum=-1.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288048    GT:AD:DP:GQ:PL    0/1:7,14:21:99:444,0,236
1    12820491    rs3010919    T    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288048    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    12820870    rs1132185    T    C    1704.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_AMINO_ACID_CHANGE=F153L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12820703_12821102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf158;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376210    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1738,132,0
1    12835868    rs1812242    T    C    919.55    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.935;DB;DP=65;Dels=0.0;FS=0.938;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;MQRankSum=-1.044;QD=14.15;ReadPosRankSum=-0.19;SNPEFF_AMINO_ACID_CHANGE=M157T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12835686_12836261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357726    GT:AD:DP:GQ:PL    0/1:31,34:65:99:950,0,1017
1    12837634    rs848578    T    A    1664.23    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DB;DP=93;Dels=0.0;FS=8.005;HRun=1;HaplotypeScore=2.8002;MQ=59.75;MQ0=0;MQRankSum=0.563;QD=17.89;ReadPosRankSum=1.176;SNPEFF_AMINO_ACID_CHANGE=I448;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12837154_12838049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357726    GT:AD:DP:GQ:PL    0/1:40,53:93:99:1694,0,1273
1    12837840    rs848577    G    C    56.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.25;ReadPosRankSum=0.573;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357726    GT:AD:DP:GQ:PL    0/1:6,3:9:86.26:86,0,220
1    12853217    rs5000865    A    T    60.61    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.297;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.5;MQ0=0;MQRankSum=-3.218;QD=1.89;ReadPosRankSum=0.882;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:27,5:32:90.60:91,0,996
1    12853230    rs115390497    G    A    39.07    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=3.276;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=53.81;MQ0=0;MQRankSum=-3.135;QD=1.12;ReadPosRankSum=2.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:30,5:35:69.07:69,0,1101
1    12853231    rs5000864    T    C    41.62    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=3.371;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=53.42;MQ0=0;MQRankSum=-3.371;QD=1.16;ReadPosRankSum=2.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:30,5:36:71.62:72,0,1080
1    12853403    rs1737157    A    C    1095.06    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=5.429;DB;DP=187;Dels=0.0;FS=10.369;HRun=1;HaplotypeScore=3.9571;MQ=50.06;MQ0=4;MQRankSum=-7.392;QD=5.86;ReadPosRankSum=-1.868;SNPEFF_AMINO_ACID_CHANGE=L9;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12853352_12853663;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:133,54:187:99:1125,0,4108
1    12853750    rs72472660    G    A    59.94    MQFilter40;QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=124;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.16;MQ0=48;MQRankSum=-2.45;QD=0.48;ReadPosRankSum=3.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:96,28:124:89.94:90,0,1802
1    12853975    rs72472661    G    T    323.11    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.899;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.89;MQ0=4;MQRankSum=-3.697;QD=3.85;ReadPosRankSum=-1.538;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:65,19:84:99:353,0,2122
1    12854021    rs140629685    G    T    240.91    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=152;Dels=0.0;FS=5.198;HRun=1;HaplotypeScore=1.7883;MQ=38.03;MQ0=6;MQRankSum=-5.455;QD=1.58;ReadPosRankSum=2.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:114,38:152:99:271,0,3234
1    12854022    rs151202400    A    T    220.93    MQFilter40;QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=156;Dels=0.0;FS=5.216;HRun=0;HaplotypeScore=1.7883;MQ=38.11;MQ0=6;MQRankSum=-5.476;QD=1.42;ReadPosRankSum=3.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:118,38:156:99:251,0,3431
1    12854041    rs76280430    T    C    396.72    MQFilter40;QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=4.99;DB;DP=210;Dels=0.0;FS=3.78;HRun=1;HaplotypeScore=1.9025;MQ=38.92;MQ0=8;MQRankSum=-5.845;QD=1.89;ReadPosRankSum=-0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:162,48:210:99:427,0,4758
1    12854052    rs78573959    C    T    256.53    MQFilter40;QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.832;DB;DP=250;DS;Dels=0.0;FS=1.934;HRun=3;HaplotypeScore=0.9867;MQ=38.46;MQ0=8;MQRankSum=-5.92;QD=1.03;ReadPosRankSum=-2.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:195,55:250:99:287,0,5893
1    12854090    rs79698223    T    A    275.88    QDFilter2    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.92;DB;DP=250;DS;Dels=0.0;FS=22.098;HRun=0;HaplotypeScore=0.9967;MQ=41.21;MQ0=6;MQRankSum=-6.617;QD=1.1;ReadPosRankSum=1.39;SNPEFF_AMINO_ACID_CHANGE=L105*;SNPEFF_CODON_CHANGE=tTg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_12854064_12854642;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:203,47:250:99:306,0,6457
1    12854097    rs76193255    T    C    277.63    QDFilter2    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.294;DB;DP=250;DS;Dels=0.0;FS=23.449;HRun=0;HaplotypeScore=0.9967;MQ=42.01;MQ0=6;MQRankSum=-6.516;QD=1.11;ReadPosRankSum=2.273;SNPEFF_AMINO_ACID_CHANGE=D107;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12854064_12854642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:203,47:250:99:308,0,6284
1    12854105    rs76648802    A    G    344.21    QDFilter2    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.353;DB;DP=250;DS;Dels=0.0;FS=20.54;HRun=1;HaplotypeScore=0.6651;MQ=42.43;MQ0=6;MQRankSum=-6.621;QD=1.38;ReadPosRankSum=3.305;SNPEFF_AMINO_ACID_CHANGE=E110G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12854064_12854642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:204,46:250:99:374,0,6382
1    12854428    rs1769774    C    T    1687.39    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.579;DB;DP=237;DS;Dels=0.0;FS=1.194;HRun=0;HaplotypeScore=5.5527;MQ=47.45;MQ0=6;MQRankSum=-0.247;QD=7.09;ReadPosRankSum=-0.041;SNPEFF_AMINO_ACID_CHANGE=P218S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12854064_12854642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:169,68:237:99:1717,0,4666
1    12854530    rs1063776    C    G    6368    PASS    AC=2;AF=1.00;AN=2;DB;DP=190;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9414;MQ=52.52;MQ0=1;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=Q252E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12854064_12854642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    1/1:1,189:190:99:6368,499,0
1    12854544    rs1063778    T    C    1633.65    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.7;DB;DP=191;DS;Dels=0.0;FS=4.822;HRun=0;HaplotypeScore=3.8043;MQ=53.95;MQ0=0;MQRankSum=-5.613;QD=8.55;ReadPosRankSum=1.557;SNPEFF_AMINO_ACID_CHANGE=V256;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12854064_12854642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:125,66:191:99:1664,0,4156
1    12854713    rs11121979    G    T    2174.65    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=0.021;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.096;MQ=56.83;MQ0=0;MQRankSum=5.19;QD=18.43;ReadPosRankSum=1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:40,78:118:99:2205,0,1192
1    12854716    rs1737150    A    G    913.76    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.096;MQ=56.67;MQ0=0;MQRankSum=-3.777;QD=8.09;ReadPosRankSum=-1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:76,37:113:99:944,0,2198
1    12854842    rs11121980    G    C    647.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=44;Dels=0.0;FS=3.362;HRun=0;HaplotypeScore=4.0191;MQ=40.39;MQ0=4;MQRankSum=1.59;QD=14.72;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:22,22:44:99:678,0,432
1    12854930    rs2744046    T    G    174.97    MQFilter40;QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.52;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8295;MQ=19.6;MQ0=33;MQRankSum=2.305;QD=1.64;ReadPosRankSum=-0.834;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_12854840_12855118;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400814    GT:AD:DP:GQ:PL    0/1:87,20:107:99:205,0,1170
1    12855720    rs113708906    C    T    1415.12    MQFilter40    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=4.626;DB;DP=222;Dels=0.0;FS=1.253;HRun=0;HaplotypeScore=1.7885;MQ=37.86;MQ0=17;MQRankSum=-0.292;QD=6.37;ReadPosRankSum=-1.295;SNPEFF_AMINO_ACID_CHANGE=R334C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12855587_12856777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:153,69:222:99:1445,0,3577
1    12855835    rs1063795    C    G    2249.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5226;MQ=26.64;MQ0=25;QD=17.17;SNPEFF_AMINO_ACID_CHANGE=A127G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12855587_12856634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400814    GT:AD:DP:GQ:PL    1/1:0,131:131:99:2283,213,0
1    12855845    rs1063797    G    C    1983.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4558;MQ=26.01;MQ0=25;QD=16.13;SNPEFF_AMINO_ACID_CHANGE=R130;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12855587_12856634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400814    GT:AD:DP:GQ:PL    1/1:0,122:123:99:2017,186,0
1    12856010    rs61775053    C    G    513.78    MQFilter40    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.416;DB;DP=250;DS;Dels=0.0;FS=0.713;HRun=0;HaplotypeScore=1.7046;MQ=25.73;MQ0=42;MQRankSum=-1.506;QD=2.06;ReadPosRankSum=-0.507;SNPEFF_AMINO_ACID_CHANGE=F185L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12855587_12856634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400814    GT:AD:DP:GQ:PL    0/1:189,61:250:99:544,0,3463
1    12856105    rs146835774    C    G    387.50    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=3.517;DB;DP=212;DS;Dels=0.0;FS=11.929;HRun=0;HaplotypeScore=33.005;MQ=25.15;MQ0=29;MQRankSum=-1.137;QD=1.83;ReadPosRankSum=0.033;SNPEFF_AMINO_ACID_CHANGE=S217*;SNPEFF_CODON_CHANGE=tCa/tGa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_12855587_12856634;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000400814    GT:AD:DP:GQ:PL    0/1:171,41:212:99:417,0,3060
1    12856111    rs61775054    C    T    1225.18    HaplotypeScoreFilter13;MQFilter40    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=6.526;DB;DP=206;DS;Dels=0.0;FS=25.5;HRun=0;HaplotypeScore=32.3399;MQ=25.0;MQ0=27;MQRankSum=-0.354;QD=5.95;ReadPosRankSum=0.585;SNPEFF_AMINO_ACID_CHANGE=P219L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12855587_12856634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400814    GT:AD:DP:GQ:PL    0/1:132,74:206:99:1255,0,1997
1    12856146    rs1974302    G    A    43.12    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.155;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.6289;MQ=22.64;MQ0=33;MQRankSum=-0.683;QD=0.32;ReadPosRankSum=1.587;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:112,23:135:73.11:73,0,1631
1    12856153    rs61775055    G    A    181.77    MQFilter40;QDFilter2    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=125;Dels=0.0;FS=4.912;HRun=0;HaplotypeScore=12.7216;MQ=22.93;MQ0=32;MQRankSum=-3.421;QD=1.45;ReadPosRankSum=0.493;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332296    GT:AD:DP:GQ:PL    0/1:88,37:125:99:212,0,1353
1    12884615    rs72550060    C    T    44.59    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.04;MQ0=1;MQRankSum=0.382;QD=3.72;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437584    GT:AD:DP:GQ:PL    0/1:9,3:12:74.58:75,0,300
1    12887054    rs3738105    T    C    655.41    HaplotypeScoreFilter13;MQFilter40    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=4.092;DB;DP=250;DS;Dels=0.0;FS=5.285;HRun=0;HaplotypeScore=41.9357;MQ=23.72;MQ0=76;MQRankSum=-1.096;QD=2.62;ReadPosRankSum=-0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    0/1:146,52:250:99:685,0,2140
1    12887549    rs2994114    T    C    4091.74    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=5.008;DB;DP=250;DS;Dels=0.0;FS=0.538;HRun=1;HaplotypeScore=3.6716;MQ=41.78;MQ0=7;MQRankSum=-9.64;QD=16.37;ReadPosRankSum=2.134;SNPEFF_AMINO_ACID_CHANGE=E103G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12887108_12887689;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437584    GT:AD:DP:GQ:PL    0/1:76,174:250:99:4092,0,2247
1    12887852    rs147258215    GT    G    52.32    QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.138;DB;DP=42;FS=0.0;HRun=11;HaplotypeScore=188.1411;IndelType=D;MQ=53.91;MQ0=0;MQRankSum=0.138;QD=1.22;ReadPosRankSum=2.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    0/1:35,8:42:91.35:91,0,550
1    12888476    .    C    T    65.93    MQFilter40;QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.026;DP=202;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7256;MQ=29.56;MQ0=67;MQRankSum=-0.389;QD=0.33;ReadPosRankSum=1.005;SNPEFF_AMINO_ACID_CHANGE=V16;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12888357_12888664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437584    GT:AD:DP:GQ:PL    0/1:176,26:202:95.92:96,0,2708
1    12888545    rs2982101    C    T    251.87    QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=250;DS;Dels=0.0;FS=38.796;HRun=0;HaplotypeScore=4.5631;MQ=45.51;MQ0=0;MQRankSum=-6.336;QD=1.01;ReadPosRankSum=0.841;SNPEFF_AMINO_ACID_CHANGE=T34;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12888357_12888604;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    0/1:220,29:250:99:282,0,5949
1    12888569    rs78453011    G    C    289.08    FSFilter60;QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=2.526;DB;DP=246;DS;Dels=0.0;FS=79.699;HRun=0;HaplotypeScore=3.7711;MQ=48.59;MQ0=1;MQRankSum=-9.742;QD=1.18;ReadPosRankSum=0.319;SNPEFF_AMINO_ACID_CHANGE=V26;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12888357_12888604;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    0/1:206,40:246:99:319,0,6471
1    12888571    rs2982100    C    T    287.27    FSFilter60;QDFilter2    AB=0.834;AC=1;AF=0.50;AN=2;BaseQRankSum=3.054;DB;DP=247;DS;Dels=0.0;FS=75.746;HRun=0;HaplotypeScore=2.7714;MQ=48.83;MQ0=1;MQRankSum=-9.968;QD=1.16;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=V26I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12888357_12888604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    0/1:206,41:247:99:317,0,6225
1    12888595    rs76039145    G    C    701.34    FSFilter60;HaplotypeScoreFilter13    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=3.481;DB;DP=226;DS;Dels=0.0;FS=87.767;HRun=0;HaplotypeScore=191.9726;MQ=46.06;MQ0=4;MQRankSum=-8.91;QD=3.1;ReadPosRankSum=0.518;SNPEFF_AMINO_ACID_CHANGE=L18V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12888357_12888604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    0/1:183,43:226:99:731,0,5444
1    12888601    rs113914674    G    GC    8235.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=216;DS;FS=0.0;HRun=3;HaplotypeScore=1249.2318;IndelType=I;MQ=45.05;MQ0=5;QD=36.6;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_12888357_12888604;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    1/1:21,204:216:99:8236,593,0
1    12888607    .    A    C    872.20    FSFilter60;HaplotypeScoreFilter13    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=3.576;DP=242;DS;Dels=0.0;FS=143.503;HRun=1;HaplotypeScore=148.8588;MQ=44.58;MQ0=6;MQRankSum=-9.588;QD=3.6;ReadPosRankSum=-0.675;SNPEFF_AMINO_ACID_CHANGE=L14;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12888607_12888648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    0/1:184,58:242:99:902,0,5422
1    12888629    rs76312011    A    G    877.47    FSFilter60    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.25;DB;DP=241;DS;Dels=0.0;FS=165.93;HRun=0;HaplotypeScore=4.5158;MQ=44.82;MQ0=6;MQRankSum=-8.813;QD=3.64;ReadPosRankSum=0.399;SNPEFF_AMINO_ACID_CHANGE=I7T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12888607_12888648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331684    GT:AD:DP:GQ:PL    0/1:184,57:241:99:907,0,5297
1    12888706    rs61777005    C    A    2504.58    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.188;DB;DP=212;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=43.35;MQ0=1;MQRankSum=-7.591;QD=11.81;ReadPosRankSum=2.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437584    GT:AD:DP:GQ:PL    0/1:111,100:212:99:2535,0,3338
1    12888752    rs61777006    C    T    2374.64    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=3.067;DB;DP=143;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.444;MQ=41.83;MQ0=0;MQRankSum=-6.178;QD=16.61;ReadPosRankSum=0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437584    GT:AD:DP:GQ:PL    0/1:61,82:143:99:2405,0,1932
1    12888795    rs61777007    T    A    823.64    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=3.788;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.18;MQ0=0;MQRankSum=-4.595;QD=11.28;ReadPosRankSum=0.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437584    GT:AD:DP:GQ:PL    0/1:39,34:73:99:854,0,1302
1    12898378    rs57957396    C    G    1237.68    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.082;DB;DP=155;Dels=0.0;FS=5.461;HRun=0;HaplotypeScore=5.3084;MQ=49.46;MQ0=0;MQRankSum=2.692;QD=7.99;ReadPosRankSum=-0.109;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:102,53:155:99:1268,0,2769
1    12898445    rs11121996    C    A    3070.20    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.028;DB;DP=164;Dels=0.0;FS=5.074;HRun=0;HaplotypeScore=0.8321;MQ=51.26;MQ0=0;MQRankSum=1.763;QD=18.72;ReadPosRankSum=-1.357;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:58,106:164:99:3100,0,1498
1    12898472    rs4301642    C    T    4925.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9383;MQ=52.54;MQ0=0;QD=31.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    1/1:0,153:154:99:4926,391,0
1    12898484    rs147900704    G    A    1065.23    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.504;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=52.89;MQ0=0;MQRankSum=0.175;QD=7.2;ReadPosRankSum=-0.258;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:103,45:148:99:1095,0,3170
1    12898654    rs55954336    A    G    1250.01    MQFilter40    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=179;Dels=0.0;FS=2.345;HRun=0;HaplotypeScore=0.9159;MQ=38.58;MQ0=11;MQRankSum=-0.777;QD=6.98;ReadPosRankSum=0.872;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:110,68:179:99:1280,0,2324
1    12898673    rs4453052    G    T    1329.91    MQFilter40    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.941;DB;DP=160;Dels=0.0;FS=27.729;HRun=1;HaplotypeScore=4.7472;MQ=31.53;MQ0=16;MQRankSum=-2.496;QD=8.31;ReadPosRankSum=2.876;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:61,99:160:99:1360,0,1141
1    12898775    rs61775386    C    G    1747.21    MQFilter40    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.878;DB;DP=245;DS;Dels=0.0;FS=1.34;HRun=0;HaplotypeScore=2.5939;MQ=27.42;MQ0=48;MQRankSum=-3.986;QD=7.13;ReadPosRankSum=3.118;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:101,144:245:99:1777,0,1798
1    12898778    rs61775387    T    A    1734.97    MQFilter40    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=2.231;DB;DP=239;DS;Dels=0.0;FS=2.98;HRun=0;HaplotypeScore=1.7273;MQ=27.78;MQ0=42;MQRankSum=-3.835;QD=7.26;ReadPosRankSum=2.668;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:97,141:239:99:1765,0,1799
1    12898810    rs71647070    T    C    35.31    MQFilter40;QDFilter2    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=197;DS;Dels=0.0;FS=1.326;HRun=0;HaplotypeScore=5.1385;MQ=26.45;MQ0=42;MQRankSum=-4.334;QD=0.18;ReadPosRankSum=-1.079;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:151,45:197:65.31:65,0,2888
1    12899057    rs9660384    C    T    103.42    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=12;Dels=0.0;FS=7.123;HRun=0;HaplotypeScore=0.0;MQ=49.33;MQ0=0;MQRankSum=0.135;QD=8.62;ReadPosRankSum=-0.529;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:7,5:12:99:133,0,235
1    12900004    rs140491439    A    G    812.12    MQFilter40    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.909;MQ=29.52;MQ0=22;MQRankSum=2.096;QD=4.83;ReadPosRankSum=-1.341;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-845O24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438176    GT:AD:DP:GQ:PL    0/1:119,49:168:99:842,0,2171
1    12907169    rs5027836    A    G    35.33    QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=3.523;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.91;MQ0=4;MQRankSum=-2.987;QD=0.86;ReadPosRankSum=-0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:31,10:41:65.32:65,0,1032
1    12907212    rs5027838    T    A    30.02    MQFilter40;QDFilter2    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.868;DB;DP=89;Dels=0.0;FS=2.342;HRun=0;HaplotypeScore=1.7074;MQ=37.16;MQ0=6;MQRankSum=-5.66;QD=0.34;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:64,25:89:60.01:60,0,1983
1    12907316    rs112607517    T    C    157.20    HaplotypeScoreFilter13;QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=198;Dels=0.0;FS=5.187;HRun=2;HaplotypeScore=13.1618;MQ=49.87;MQ0=4;MQRankSum=-8.946;QD=0.79;ReadPosRankSum=-5.481;SNPEFF_AMINO_ACID_CHANGE=E276G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:154,44:198:99:187,0,4846
1    12907777    rs28391533    T    C    75.98    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=2.512;DB;DP=96;Dels=0.0;FS=39.876;HRun=2;HaplotypeScore=0.0;MQ=52.81;MQ0=1;MQRankSum=-5.485;QD=0.79;ReadPosRankSum=-0.462;SNPEFF_AMINO_ACID_CHANGE=G122;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:81,15:96:99:106,0,2748
1    12907781    rs28441396    T    C    78.99    QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=2.392;DB;DP=95;Dels=0.0;FS=37.454;HRun=1;HaplotypeScore=0.0;MQ=52.19;MQ0=1;MQRankSum=-5.329;QD=0.83;ReadPosRankSum=0.082;SNPEFF_AMINO_ACID_CHANGE=D121G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:80,15:95:99:109,0,2690
1    12907798    rs150096254    A    C    129.12    QDFilter2;SnpCluster    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=4.366;DB;DP=102;Dels=0.0;FS=32.236;HRun=0;HaplotypeScore=0.9665;MQ=50.05;MQ0=1;MQRankSum=-5.563;QD=1.25;ReadPosRankSum=0.005;SNPEFF_AMINO_ACID_CHANGE=F115L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:82,19:102:99:159,0,2686
1    12907802    rs138087690    C    T    92.68    QDFilter2;SnpCluster    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=105;Dels=0.0;FS=34.505;HRun=0;HaplotypeScore=0.9665;MQ=49.79;MQ0=1;MQRankSum=-5.676;QD=0.88;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=G114D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:85,20:105:99:123,0,2761
1    12907803    rs141460546    C    T    101.69    QDFilter2;SnpCluster    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.853;DB;DP=104;Dels=0.0;FS=31.19;HRun=0;HaplotypeScore=0.9665;MQ=49.9;MQ0=1;MQRankSum=-5.638;QD=0.98;ReadPosRankSum=-0.12;SNPEFF_AMINO_ACID_CHANGE=G114S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:84,20:104:99:132,0,2700
1    12907837    rs1736811    C    T    693.96    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.045;DB;DP=134;Dels=0.0;FS=5.725;HRun=0;HaplotypeScore=2.9661;MQ=50.14;MQ0=5;MQRankSum=-2.878;QD=5.14;ReadPosRankSum=-1.101;SNPEFF_AMINO_ACID_CHANGE=A102;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:93,41:134:99:724,0,2898
1    12907885    rs848418    T    C    2867.04    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.539;DB;DP=168;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7796;MQ=51.88;MQ0=4;MQRankSum=3.485;QD=17.07;ReadPosRankSum=0.899;SNPEFF_AMINO_ACID_CHANGE=A86;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:69,98:168:99:2897,0,1756
1    12908236    rs1736809    G    T    126.12    MQFilter40    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.875;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.43;MQ0=5;MQRankSum=-3.19;QD=2.29;ReadPosRankSum=1.121;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:32,23:55:99:156,0,957
1    12908243    rs1736808    A    G    224.17    MQFilter40    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=4.26;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9452;MQ=36.45;MQ0=5;MQRankSum=-2.569;QD=4.15;ReadPosRankSum=0.748;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:29,25:54:99:254,0,848
1    12908278    rs3860363    C    A    37.59    MQFilter40;QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.982;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=37.43;MQ0=1;MQRankSum=-0.741;QD=0.96;ReadPosRankSum=-0.06;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_12907261_12908323;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:32,7:39:67.59:68,0,851
1    12908333    rs61775391    T    C    214.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.79;MQ0=0;MQRankSum=-0.813;QD=13.41;ReadPosRankSum=-1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317869    GT:AD:DP:GQ:PL    0/1:6,10:16:99:245,0,189
1    12919350    rs61775399    A    G    318.93    HaplotypeScoreFilter13;SnpCluster    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=27;Dels=0.0;FS=3.442;HRun=0;HaplotypeScore=13.9351;MQ=50.24;MQ0=0;MQRankSum=2.344;QD=11.81;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240189    GT:AD:DP:GQ:PL    0/1:16,11:27:99:349,0,512
1    12919353    rs2179186    G    T    133.77    HaplotypeScoreFilter13;SnpCluster    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=2.351;DB;DP=27;Dels=0.0;FS=4.559;HRun=0;HaplotypeScore=13.9351;MQ=49.41;MQ0=0;MQRankSum=-3.624;QD=4.95;ReadPosRankSum=1.909;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240189    GT:AD:DP:GQ:PL    0/1:20,7:27:99:164,0,651
1    12919360    rs111283876    A    T    143.42    HaplotypeScoreFilter13;SnpCluster    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=30;Dels=0.0;FS=7.593;HRun=3;HaplotypeScore=14.9085;MQ=48.83;MQ0=0;MQRankSum=-3.681;QD=4.78;ReadPosRankSum=1.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240189    GT:AD:DP:GQ:PL    0/1:22,8:30:99:173,0,785
1    12919422    rs74056157    T    C    119.19    PASS    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=55;Dels=0.0;FS=21.654;HRun=0;HaplotypeScore=0.0;MQ=47.9;MQ0=0;MQRankSum=-4.453;QD=2.17;ReadPosRankSum=0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240189    GT:AD:DP:GQ:PL    0/1:43,12:55:99:149,0,1471
1    12919423    rs74056158    G    A    111.46    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.462;DB;DP=55;Dels=0.0;FS=15.915;HRun=1;HaplotypeScore=0.0;MQ=47.72;MQ0=0;MQRankSum=-4.072;QD=2.03;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240189    GT:AD:DP:GQ:PL    0/1:44,11:55:99:141,0,1473
1    12921332    rs17039307    T    C    247.85    QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.597;DB;DP=179;Dels=0.0;FS=0.884;HRun=1;HaplotypeScore=2.9193;MQ=51.8;MQ0=9;MQRankSum=-5.78;QD=1.38;ReadPosRankSum=0.408;SNPEFF_AMINO_ACID_CHANGE=C375R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12921076_12921764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240189    GT:AD:DP:GQ:PL    0/1:149,30:179:99:278,0,4972
1    12921716    rs2994094    A    G    89.57    MQFilter40;QDFilter2    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=3.889;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=31.38;MQ0=2;MQRankSum=-3.528;QD=1.83;ReadPosRankSum=2.446;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240189    GT:AD:DP:GQ:PL    0/1:38,11:49:99:120,0,986
1    12940016    rs55642883    C    A    38.65    MQFilter40;QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.0867;MQ=18.01;MQ0=23;MQRankSum=1.158;QD=0.33;ReadPosRankSum=0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:99,17:116:68.64:69,0,730
1    12940068    rs2994082    G    A    126.91    MQFilter40    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.111;DB;DP=60;Dels=0.0;FS=14.586;HRun=1;HaplotypeScore=0.0;MQ=34.51;MQ0=0;MQRankSum=0.051;QD=2.12;ReadPosRankSum=0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:50,10:60:99:157,0,1421
1    12940111    rs61429700    T    C    145.72    MQFilter40    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.057;DB;DP=35;Dels=0.0;FS=5.509;HRun=1;HaplotypeScore=3.9398;MQ=39.61;MQ0=0;MQRankSum=-1.831;QD=4.16;ReadPosRankSum=-0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:26,9:35:99:176,0,892
1    12940117    rs28459245    C    G    215.51    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=33;Dels=0.0;FS=4.624;HRun=0;HaplotypeScore=5.9375;MQ=40.05;MQ0=0;MQRankSum=-2.601;QD=6.53;ReadPosRankSum=0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:21,12:33:99:246,0,712
1    12941438    rs61781963    G    A    89.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.66;MQ0=0;MQRankSum=0.421;QD=11.19;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:4,4:8:99:120,0,121
1    12942119    rs75355616    C    T    2759.16    MQFilter40    AB=0.428;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.809;DB;DP=250;DS;Dels=0.0;FS=2.941;HRun=1;HaplotypeScore=1.6208;MQ=27.15;MQ0=21;MQRankSum=-0.848;QD=11.04;ReadPosRankSum=-1.434;SNPEFF_AMINO_ACID_CHANGE=R144K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12941675_12942256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:107,143:250:99:2789,0,1658
1    12942289    rs2994081    C    A    60.51    MQFilter40;QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=249;DS;Dels=0.0;FS=51.018;HRun=1;HaplotypeScore=3.7034;MQ=18.85;MQ0=102;MQRankSum=-1.566;QD=0.24;ReadPosRankSum=0.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:184,65:249:90.50:90,0,2740
1    12942306    rs2994080    C    T    224.12    MQFilter40;QDFilter2    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=4.02;DB;DP=231;DS;Dels=0.0;FS=11.478;HRun=2;HaplotypeScore=1.7987;MQ=20.29;MQ0=89;MQRankSum=-1.619;QD=0.97;ReadPosRankSum=-1.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:164,67:231:99:254,0,2547
1    12942399    rs61781965    A    G    433.16    MQFilter40    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=4.652;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.181;MQ=33.74;MQ0=14;MQRankSum=0.993;QD=5.1;ReadPosRankSum=1.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:49,34:85:99:463,0,1247
1    12942414    rs28438506    G    T    379.93    MQFilter40    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DB;DP=61;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=3.775;MQ=36.58;MQ0=4;MQRankSum=-3.499;QD=6.23;ReadPosRankSum=-1.679;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:40,21:61:99:410,0,1171
1    12942430    rs78990759    G    C    169.57    MQFilter40    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.41;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.83;MQ0=0;MQRankSum=-0.929;QD=4.14;ReadPosRankSum=-0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:32,9:41:99:200,0,1126
1    12942862    rs61778465    G    C    1071.15    PASS    AB=0.283;AC=1;AF=0.50;AN=2;BaseQRankSum=2.284;DB;DP=53;Dels=0.0;FS=18.201;HRun=1;HaplotypeScore=2.9627;MQ=53.69;MQ0=0;MQRankSum=-2.656;QD=20.21;ReadPosRankSum=-0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:15,38:53:99:1101,0,354
1    12943277    rs115845904    G    A    909.87    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.087;DB;DP=103;DS;Dels=0.0;FS=1.48;HRun=2;HaplotypeScore=2.8662;MQ=57.0;MQ0=0;MQRankSum=-0.344;QD=8.83;ReadPosRankSum=-1.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235349    GT:AD:DP:GQ:PL    0/1:66,36:103:99:940,0,2278
1    12952966    rs144302450    G    A    54.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=13.69;SNPEFF_AMINO_ACID_CHANGE=G402;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12952727_12953305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000235347    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:87,9,0
1    12952968    .    C    G    54.74    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=13.69;SNPEFF_AMINO_ACID_CHANGE=G402R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12952727_12953305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000235347    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:87,9,0
1    12954490    rs149281133    A    G    562.41    MQFilter40    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.902;DB;DP=244;DS;Dels=0.0;FS=5.707;HRun=1;HaplotypeScore=6.8969;MQ=22.48;MQ0=30;MQRankSum=-1.337;QD=2.3;ReadPosRankSum=0.092;SNPEFF_AMINO_ACID_CHANGE=C265R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12954417_12954995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000235347    GT:AD:DP:GQ:PL    0/1:186,55:244:99:592,0,2980
1    12979729    rs146836223    G    A    386.49    MQFilter40;QDFilter2    AB=0.817;AC=1;AF=0.50;AN=2;BaseQRankSum=4.612;DB;DP=224;Dels=0.0;FS=2.944;HRun=0;HaplotypeScore=2.4282;MQ=27.13;MQ0=6;MQRankSum=-0.252;QD=1.73;ReadPosRankSum=-2.031;SNPEFF_AMINO_ACID_CHANGE=S307;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12979672_12980233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330881    GT:AD:DP:GQ:PL    0/1:183,41:224:99:416,0,3216
1    12979845    rs142026718    T    C    36.60    MQFilter40;QDFilter2    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=155;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7599;MQ=22.43;MQ0=28;MQRankSum=-1.391;QD=0.24;ReadPosRankSum=0.108;SNPEFF_AMINO_ACID_CHANGE=V346A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_12979672_12980233;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330881    GT:AD:DP:GQ:PL    0/1:131,23:155:66.59:67,0,2277
1    13001186    .    C    T    722.33    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.889;DP=250;DS;Dels=0.0;FS=5.543;HRun=0;HaplotypeScore=3.4609;MQ=17.39;MQ0=107;MQRankSum=0.144;QD=2.89;ReadPosRankSum=2.202;SNPEFF_AMINO_ACID_CHANGE=C166Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13000814_13001395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355096    GT:AD:DP:GQ:PL    0/1:177,71:250:99:752,0,1563
1    13001312    rs76131424    C    G    1435.48    MQFilter40    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=3.345;DB;DP=250;DS;Dels=0.0;FS=4.714;HRun=1;HaplotypeScore=3.6481;MQ=28.67;MQ0=48;MQRankSum=-0.064;QD=5.74;ReadPosRankSum=-1.596;SNPEFF_AMINO_ACID_CHANGE=C124S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13000814_13001395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355096    GT:AD:DP:GQ:PL    0/1:171,78:250:99:1465,0,3228
1    13001418    rs150206676    C    A    909.01    MQFilter40    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=161;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.542;MQ=17.74;MQ0=56;MQRankSum=2.011;QD=5.65;ReadPosRankSum=1.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355096    GT:AD:DP:GQ:PL    0/1:84,77:161:99:939,0,634
1    13001428    rs61779368    C    A    441.43    MQFilter40    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.822;DB;DP=159;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9445;MQ=17.68;MQ0=56;MQRankSum=-2.929;QD=2.78;ReadPosRankSum=-1.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355096    GT:AD:DP:GQ:PL    0/1:96,63:159:99:471,0,1016
1    13001445    rs61779369    C    T    219.39    MQFilter40;QDFilter2    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=4.539;DB;DP=140;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.1188;MQ=17.44;MQ0=46;MQRankSum=-3.408;QD=1.57;ReadPosRankSum=-0.924;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355096    GT:AD:DP:GQ:PL    0/1:92,48:140:99:249,0,1013
1    13001465    .    G    T    94.33    MQFilter40;QDFilter2    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.973;DP=113;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6229;MQ=18.27;MQ0=37;MQRankSum=-4.021;QD=0.83;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355096    GT:AD:DP:GQ:PL    0/1:73,40:113:99:124,0,1094
1    13001489    rs61779370    C    G    808.83    MQFilter40    AB=0.317;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.242;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.891;MQ=18.86;MQ0=28;MQRankSum=2.935;QD=9.86;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355096    GT:AD:DP:GQ:PL    0/1:26,56:82:66.03:839,0,66
1    13036447    .    C    G    188.42    MQFilter40;QDFilter2    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.914;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=8.38;MQ0=157;MQRankSum=-2.07;QD=0.75;ReadPosRankSum=-1.321;SNPEFF_AMINO_ACID_CHANGE=V173;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13036222_13036800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376187    GT:AD:DP:GQ:PL    0/1:99,151:250:99:218,0,163
1    13036587    rs77788641    C    T    2812.46    MQFilter40    AB=0.328;AC=1;AF=0.50;AN=2;BaseQRankSum=5.993;DB;DP=247;DS;Dels=0.0;FS=6.788;HRun=0;HaplotypeScore=1.445;MQ=21.67;MQ0=27;MQRankSum=-1.437;QD=11.39;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=P220L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13036222_13036800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376187    GT:AD:DP:GQ:PL    0/1:81,166:247:99:2842,0,959
1    13052589    rs71225489    A    T    271.62    MQFilter40    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.695;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=36.94;MQ0=2;MQRankSum=-2.897;QD=10.45;ReadPosRankSum=-1.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376192    GT:AD:DP:GQ:PL    0/1:11,15:26:99:302,0,350
1    13052789    rs61780142    G    A    1990.70    PASS    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.005;DB;DP=240;DS;Dels=0.0;FS=5.898;HRun=0;HaplotypeScore=3.5226;MQ=49.88;MQ0=0;MQRankSum=-0.545;QD=8.29;ReadPosRankSum=0.008;SNPEFF_AMINO_ACID_CHANGE=D70;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13052394_13052998;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3308P17.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436041    GT:AD:DP:GQ:PL    0/1:160,79:240:99:2021,0,5067
1    13052871    rs79792138    C    T    1685.03    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.757;DB;DP=241;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.6831;MQ=44.86;MQ0=6;MQRankSum=-2.431;QD=6.99;ReadPosRankSum=0.476;SNPEFF_AMINO_ACID_CHANGE=S43N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13052394_13052998;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3308P17.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436041    GT:AD:DP:GQ:PL    0/1:156,84:241:99:1715,0,4516
1    13052907    rs72474524    T    C    3910.69    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.531;DB;DP=233;DS;Dels=0.0;FS=6.164;HRun=2;HaplotypeScore=7.8745;MQ=44.98;MQ0=5;MQRankSum=-3.791;QD=16.78;ReadPosRankSum=-0.076;SNPEFF_AMINO_ACID_CHANGE=Q31R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13052394_13052998;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3308P17.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436041    GT:AD:DP:GQ:PL    0/1:73,160:233:99:3911,0,2069
1    13111821    .    C    G    548.48    MQFilter40    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.425;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.44;MQ0=41;MQRankSum=-0.713;QD=5.54;ReadPosRankSum=1.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376182    GT:AD:DP:GQ:PL    0/1:41,58:99:99:578,0,402
1    13123381    .    A    G    145.28    MQFilter40;QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=19.73;MQ0=40;MQRankSum=-0.544;QD=1.99;ReadPosRankSum=-0.544;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512015    GT:AD:DP:GQ:PL    0/1:59,14:73:99:175,0,673
1    13123447    .    A    G    195.41    MQFilter40    AC=2;AF=1.00;AN=2;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.34;MQ0=1;QD=21.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512015    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:228,21,0
1    13123480    .    A    C    46.31    MQFilter40;QDFilter2    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.5;MQ0=24;MQRankSum=1.881;QD=1.4;ReadPosRankSum=-1.159;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512015    GT:AD:DP:GQ:PL    0/1:26,7:33:76.30:76,0,111
1    13123802    .    C    T    35.78    MQFilter40;QDFilter2    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.506;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=5.56;MQ0=92;MQRankSum=-1.752;QD=0.32;ReadPosRankSum=0.195;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512015    GT:AD:DP:GQ:PL    0/1:59,54:113:46.13:66,0,46
1    13125941    .    C    A    101.24    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.86;MQ0=67;QD=1.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512015    GT:AD:DP:GQ:PL    1/1:62,19:81:12.03:134,12,0
1    13125943    .    G    A    86.88    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.91;MQ0=66;QD=1.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512015    GT:AD:DP:GQ:PL    1/1:61,19:80:12.02:119,12,0
1    13125944    .    C    T    87.86    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.91;MQ0=66;QD=1.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512015    GT:AD:DP:GQ:PL    1/1:61,19:80:12.02:120,12,0
1    13125950    .    C    A    150.24    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.62;MQ0=62;QD=1.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512015    GT:AD:DP:GQ:PL    1/1:57,21:78:18.02:183,18,0
1    13141835    rs79437155    C    T    542.41    MQFilter40    AB=0.16;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.75;MQ0=0;MQRankSum=0.63;QD=21.7;ReadPosRankSum=1.001;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415919    GT:AD:DP:GQ:PL    0/1:4,21:25:36.46:572,0,36
1    13183165    .    T    C    138.68    QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DP=116;Dels=0.0;FS=35.808;HRun=0;HaplotypeScore=2.4904;MQ=48.0;MQ0=0;MQRankSum=-3.57;QD=1.2;ReadPosRankSum=-1.335;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:96,20:116:99:169,0,2703
1    13183168    .    A    G    137.26    QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.341;DP=114;Dels=0.0;FS=32.516;HRun=0;HaplotypeScore=1.912;MQ=47.48;MQ0=0;MQRankSum=-3.341;QD=1.2;ReadPosRankSum=-1.293;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:94,20:114:99:167,0,2662
1    13183176    rs115395118    C    T    223.86    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.957;DB;DP=121;Dels=0.0;FS=41.801;HRun=1;HaplotypeScore=3.7521;MQ=43.97;MQ0=3;MQRankSum=-2.935;QD=1.85;ReadPosRankSum=-0.945;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:99,22:121:99:254,0,2819
1    13183180    rs138475976    T    C    258.99    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.319;DB;DP=123;Dels=0.0;FS=42.128;HRun=1;HaplotypeScore=5.7053;MQ=43.42;MQ0=4;MQRankSum=-2.856;QD=2.11;ReadPosRankSum=-0.813;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:100,23:123:99:289,0,2908
1    13183195    rs140894230    A    G    429.53    MQFilter40    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.008;DB;DP=143;Dels=0.0;FS=56.127;HRun=0;HaplotypeScore=2.9266;MQ=39.27;MQ0=7;MQRankSum=-2.428;QD=3.0;ReadPosRankSum=-1.496;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:106,35:143:99:460,0,2870
1    13183199    rs146955784    C    G    475.59    MQFilter40    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.655;DB;DP=146;Dels=0.0;FS=58.568;HRun=1;HaplotypeScore=0.0;MQ=38.54;MQ0=7;MQRankSum=-1.981;QD=3.26;ReadPosRankSum=-1.142;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:109,37:146:99:506,0,3002
1    13183213    rs28373323    T    A    679.51    FSFilter60;MQFilter40    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.249;DB;DP=168;Dels=0.0;FS=67.371;HRun=0;HaplotypeScore=2.3657;MQ=36.11;MQ0=10;MQRankSum=-1.86;QD=4.04;ReadPosRankSum=0.754;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:124,44:168:99:709,0,3175
1    13183243    rs138897759    T    C    976.05    FSFilter60;MQFilter40;SnpCluster    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=211;Dels=0.0;FS=64.072;HRun=0;HaplotypeScore=1.5661;MQ=31.84;MQ0=18;MQRankSum=-2.301;QD=4.63;ReadPosRankSum=-1.193;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:148,63:211:99:1006,0,3473
1    13183248    rs141472183    T    A    613.79    FSFilter60;MQFilter40;SnpCluster    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.087;DB;DP=215;Dels=0.0;FS=75.899;HRun=0;HaplotypeScore=0.734;MQ=32.6;MQ0=18;MQRankSum=-1.282;QD=2.85;ReadPosRankSum=-2.641;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:144,71:215:99:644,0,3411
1    13183249    rs139566100    C    A    657.03    FSFilter60;MQFilter40;SnpCluster    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.357;DB;DP=214;Dels=0.0;FS=80.254;HRun=0;HaplotypeScore=0.0;MQ=32.86;MQ0=18;MQRankSum=-1.804;QD=3.07;ReadPosRankSum=-2.775;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:142,72:214:99:687,0,3328
1    13183439    rs28713604    T    C    3313.41    PASS    AB=0.24;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.036;DB;DP=171;DS;Dels=0.0;FS=19.099;HRun=0;HaplotypeScore=2.3665;MQ=52.89;MQ0=2;MQRankSum=0.667;QD=19.38;ReadPosRankSum=-0.447;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:41,130:171:99:3313,0,1076
1    13183468    .    G    A    152.43    QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.272;DP=129;Dels=0.0;FS=10.598;HRun=0;HaplotypeScore=0.734;MQ=53.84;MQ0=1;MQRankSum=-0.933;QD=1.18;ReadPosRankSum=-0.803;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:113,16:129:99:182,0,3738
1    13183511    rs72864546    T    C    795.31    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.285;DB;DP=86;Dels=0.0;FS=33.305;HRun=1;HaplotypeScore=1.9995;MQ=51.87;MQ0=1;MQRankSum=-3.33;QD=9.25;ReadPosRankSum=-0.198;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:52,33:86:99:825,0,1637
1    13183528    rs76937665    A    C    357.61    SnpCluster    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=80;Dels=0.0;FS=19.643;HRun=0;HaplotypeScore=0.0;MQ=50.15;MQ0=1;MQRankSum=-4.527;QD=4.47;ReadPosRankSum=0.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:56,24:80:99:388,0,1746
1    13183532    rs77505369    C    T    282.52    SnpCluster    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=0.396;DB;DP=74;Dels=0.0;FS=18.384;HRun=0;HaplotypeScore=0.0;MQ=50.39;MQ0=0;MQRankSum=-4.708;QD=3.82;ReadPosRankSum=1.515;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:55,19:74:99:313,0,1690
1    13183533    rs77556803    C    T    283.49    SnpCluster    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.401;DB;DP=75;Dels=0.0;FS=14.754;HRun=0;HaplotypeScore=0.8321;MQ=50.53;MQ0=0;MQRankSum=-4.529;QD=3.78;ReadPosRankSum=1.497;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323770    GT:AD:DP:GQ:PL    0/1:56,19:75:99:313,0,1679
1    13183973    rs3929664    G    A    92.31    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.838;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6584;MQ=31.81;MQ0=2;MQRankSum=-1.838;QD=5.13;ReadPosRankSum=1.733;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP13-221M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449855    GT:AD:DP:GQ:PL    0/1:8,10:18:99:122,0,242
1    13218904    rs2486712    T    A    152.65    MQFilter40;QDFilter2    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.57;DB;DP=166;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=7.22;MQ0=129;MQRankSum=0.35;QD=0.92;ReadPosRankSum=1.539;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-2994D6.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:97,69:166:99:183,0,150
1    13219094    .    G    T    88.56    MQFilter40;QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.002;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5177;MQ=11.11;MQ0=137;MQRankSum=0.998;QD=0.35;ReadPosRankSum=0.709;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-2994D6.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:209,39:250:99:119,0,1404
1    13219149    rs61780824    G    A    115.83    MQFilter40;QDFilter2    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=0.803;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=11.07;MQ0=128;MQRankSum=1.479;QD=0.47;ReadPosRankSum=0.829;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-2994D6.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:199,49:248:99:146,0,1053
1    13353794    .    T    C    78.31    MQFilter40;QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.509;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.775;MQ=7.38;MQ0=82;MQRankSum=1.091;QD=0.71;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-248D7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453094    GT:AD:DP:GQ:PL    0/1:90,21:111:68.63:108,0,69
1    13353900    .    C    T    263.66    MQFilter40    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=1.305;DP=120;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=7.8933;MQ=12.82;MQ0=64;MQRankSum=0.247;QD=2.2;ReadPosRankSum=-1.152;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-248D7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453094    GT:AD:DP:GQ:PL    0/1:49,71:120:99:294,0,312
1    13353910    .    G    C    68.63    MQFilter40;QDFilter2    AB=0.916;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DP=131;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=7.8933;MQ=12.08;MQ0=77;MQRankSum=0.274;QD=0.52;ReadPosRankSum=1.458;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-248D7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453094    GT:AD:DP:GQ:PL    0/1:120,11:131:98.63:99,0,542
1    13353963    .    G    A    32.36    MQFilter40;QDFilter2    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=3.625;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=8.92;MQ0=78;MQRankSum=0.755;QD=0.29;ReadPosRankSum=-0.038;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-248D7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453094    GT:AD:DP:GQ:PL    0/1:71,39:110:62.35:62,0,136
1    13354089    .    T    G    90.53    MQFilter40;QDFilter2    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DP=170;Dels=0.0;FS=1.087;HRun=0;HaplotypeScore=0.0;MQ=20.33;MQ0=24;MQRankSum=-2.041;QD=0.53;ReadPosRankSum=-0.959;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-248D7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453094    GT:AD:DP:GQ:PL    0/1:135,35:170:99:121,0,2398
1    13365776    .    C    G    137.19    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.66;MQ0=8;MQRankSum=0.668;QD=6.53;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376168    GT:AD:DP:GQ:PL    1/1:5,16:21:4.24:168,4,0
1    13368030    .    C    T    56.50    MQFilter40;QDFilter2    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=9.4;MQ0=24;MQRankSum=-0.361;QD=1.71;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376168    GT:AD:DP:GQ:PL    0/1:20,13:33:63.82:86,0,64
1    13413926    .    A    G    31.84    MQFilter40;QDFilter2    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.26;MQ0=102;MQRankSum=-0.111;QD=0.23;ReadPosRankSum=-1.512;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=RP11-219C24.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437300    GT:AD:DP:GQ:PL    0/1:90,48:138:61.83:62,0,129
1    13414034    .    G    A    185.14    MQFilter40;QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.289;DP=210;Dels=0.0;FS=5.438;HRun=0;HaplotypeScore=0.9789;MQ=14.44;MQ0=94;MQRankSum=-0.421;QD=0.88;ReadPosRankSum=-0.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=RP11-219C24.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437300    GT:AD:DP:GQ:PL    0/1:150,60:210:99:215,0,1363
1    13414059    rs141192612    C    T    650.49    HaplotypeScoreFilter13;MQFilter40    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=0.552;DB;DP=241;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=29.1469;MQ=18.21;MQ0=65;MQRankSum=-0.129;QD=2.7;ReadPosRankSum=1.108;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=RP11-219C24.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437300    GT:AD:DP:GQ:PL    0/1:179,62:241:99:680,0,2098
1    13414069    .    G    C    240.32    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.01;DP=236;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=30.1134;MQ=18.61;MQ0=60;MQRankSum=2.305;QD=1.02;ReadPosRankSum=-0.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=RP11-219C24.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437300    GT:AD:DP:GQ:PL    0/1:194,42:236:99:270,0,2620
1    13414082    .    T    C    241.18    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DP=195;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.932;MQ=19.84;MQ0=33;MQRankSum=1.23;QD=1.24;ReadPosRankSum=3.051;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=RP11-219C24.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437300    GT:AD:DP:GQ:PL    0/1:156,39:195:99:271,0,2356
1    13414089    .    G    A    212.53    MQFilter40;QDFilter2    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.854;DP=183;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9655;MQ=19.82;MQ0=36;MQRankSum=2.653;QD=1.16;ReadPosRankSum=4.416;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=RP11-219C24.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437300    GT:AD:DP:GQ:PL    0/1:152,31:183:99:243,0,2406
1    13448283    rs80327699    A    G    1658.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=26.46;MQ0=5;QD=21.27;SNPEFF_AMINO_ACID_CHANGE=L398;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13447414_13448608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376132    GT:AD:DP:GQ:PL    1/1:0,78:78:99:1692,171,0
1    13448351    rs71183793    T    C    530.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.66;MQ0=85;QD=4.45;SNPEFF_AMINO_ACID_CHANGE=H375R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13447414_13448608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376132    GT:AD:DP:GQ:PL    1/1:38,81:119:57.08:563,57,0
1    13695685    .    G    A    331.44    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=207;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=6.73;MQ0=181;QD=1.6;SNPEFF_AMINO_ACID_CHANGE=S358L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13694889_13696098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376101    GT:AD:DP:GQ:PL    1/1:59,147:207:41.98:364,42,0
1    13695787    .    C    G    1176.17    MQFilter40    AC=2;AF=1.00;AN=2;DP=239;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=14.89;MQ0=123;QD=4.92;SNPEFF_AMINO_ACID_CHANGE=G324A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13694889_13696098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376101    GT:AD:DP:GQ:PL    1/1:68,171:239:99:1209,120,0
1    13695816    rs148990958    G    A    2918.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9157;MQ=22.1;MQ0=77;QD=11.67;SNPEFF_AMINO_ACID_CHANGE=C314;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13694889_13696098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376101    GT:AD:DP:GQ:PL    1/1:49,201:250:99:2951,279,0
1    13695974    rs142734546    T    C    257.19    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=209;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.54;MQ0=80;QD=1.23;SNPEFF_AMINO_ACID_CHANGE=T262A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13694889_13696098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376101    GT:AD:DP:GQ:PL    1/1:74,134:209:29.98:290,30,0
1    13696047    .    A    T    37.98    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=129;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=10.2;MQ0=70;QD=0.29;SNPEFF_AMINO_ACID_CHANGE=D237E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13694889_13696098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376101    GT:AD:DP:GQ:PL    1/1:62,67:129:8.96:70,9,0
1    13696054    .    G    A    37.98    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=9.86;MQ0=71;QD=0.31;SNPEFF_AMINO_ACID_CHANGE=S235F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13694889_13696098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376101    GT:AD:DP:GQ:PL    1/1:64,58:122:8.96:70,9,0
1    13696090    .    T    C    64.19    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.74;MQ0=59;QD=0.76;SNPEFF_AMINO_ACID_CHANGE=K223R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13694889_13696098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376101    GT:AD:DP:GQ:PL    1/1:50,35:85:11.96:97,12,0
1    13719052    rs141370897    T    G    221.52    MQFilter40    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.852;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=32.92;MQ0=4;MQRankSum=1.172;QD=9.23;ReadPosRankSum=-0.038;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAMEF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376098    GT:AD:DP:GQ:PL    0/1:11,13:24:99:252,0,331
1    13802224    rs3795750    G    A    205.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.31;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376085    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
1    13802325    rs3013105    T    C    916.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.28;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=K292E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13801445_13802567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376085    GT:AD:DP:GQ:PL    1/1:0,32:32:72.21:949,72,0
1    13802437    rs3013106    G    A    376.66    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.157;QD=12.99;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=S254;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13801445_13802567;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376085    GT:AD:DP:GQ:PL    0/1:14,15:29:99:407,0,463
1    13910417    rs355025    C    T    900.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_AMINO_ACID_CHANGE=P30;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13910328_13910595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510906    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:933,72,0
1    13936822    rs404658    G    T    267.17    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.502;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.384;QD=7.22;ReadPosRankSum=-0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294489    GT:AD:DP:GQ:PL    0/1:24,13:37:99:297,0,863
1    13937089    rs2487643    G    T    425.04    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.049;DB;DP=27;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=0.464;QD=15.74;ReadPosRankSum=-0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294489    GT:AD:DP:GQ:PL    0/1:12,15:27:99:455,0,408
1    13940014    rs1767681    C    T    65.89    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.24;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294489    GT:AD:DP:GQ:PL    0/1:5,3:8:95.89:96,0,178
1    13940864    rs2486188    C    G    776.09    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=3.354;DB;DP=67;Dels=0.0;FS=3.557;HRun=1;HaplotypeScore=1.6281;MQ=59.03;MQ0=0;MQRankSum=-0.77;QD=11.58;ReadPosRankSum=-0.047;SNPEFF_AMINO_ACID_CHANGE=A105G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_13940795_13940906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376061    GT:AD:DP:GQ:PL    0/1:40,27:67:99:806,0,1114
1    14143003    rs1046331    A    G    1297.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_AMINO_ACID_CHANGE=Q198R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_14142922_14143065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376048    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1330,105,0
1    14149396    rs2744681    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235372    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    14149505    rs2697970    C    A    281.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235372    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
1    14149601    rs2697969    C    T    1020.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235372    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1054,78,0
1    14149622    rs2697968    T    C    1333.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235372    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1367,102,0
1    14149844    rs1046333    T    A    147.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235372    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
1    14220186    rs1358577    A    G    215.47    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=21;Dels=0.0;FS=4.036;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=10.26;ReadPosRankSum=0.528;SNPEFF_AMINO_ACID_CHANGE=N19S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_14219052_14220251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf196;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412667    GT:AD:DP:GQ:PL    0/1:11,10:21:99:245,0,349
1    15390200    rs41269413    A    G    86.12    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.15;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361144    GT:AD:DP:GQ:PL    0/1:9,5:14:99:116,0,244
1    15427934    rs10927676    C    T    149.59    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.996;QD=8.31;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376030    GT:AD:DP:GQ:PL    0/1:11,7:18:99:180,0,366
1    15428358    rs477953    T    C    86.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376030    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    15438990    rs10803354    G    A    115.57    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.9999;MQ=57.05;MQ0=0;MQRankSum=1.067;QD=14.45;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=A706T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15438923_15439037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376030    GT:AD:DP:GQ:PL    0/1:2,6:8:65.40:146,0,65
1    15441275    rs1055412    C    T    114.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=16.35;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469734    GT:AD:DP:GQ:PL    0/1:3,4:7:56.72:144,0,57
1    15447444    rs41269425    C    T    306.60    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8318;MQ=60.0;MQ0=0;MQRankSum=0.207;QD=8.29;ReadPosRankSum=-0.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376030    GT:AD:DP:GQ:PL    0/1:24,13:37:99:337,0,757
1    15447498    rs1546906    A    G    2299.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376030    GT:AD:DP:GQ:PL    1/1:0,69:70:99:2333,172,0
1    15494756    rs6677061    A    G    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376005    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
1    15495110    rs78615461    A    G    1299.01    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.947;DB;DP=111;Dels=0.0;FS=2.504;HRun=1;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=11.7;ReadPosRankSum=0.112;SNPEFF_AMINO_ACID_CHANGE=Y88H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15494970_15495273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf195;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376005    GT:AD:DP:GQ:PL    0/1:68,43:111:99:1329,0,2172
1    15497727    rs6429722    T    C    265.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_AMINO_ACID_CHANGE=R16;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15497677_15497813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf195;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376005    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:299,21,0
1    15541537    rs3753314    C    T    180.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.663;QD=12.87;ReadPosRankSum=1.406;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_15541391_15541927;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303840    GT:AD:DP:GQ:PL    0/1:7,7:14:99:210,0,249
1    15563404    rs1752027    G    A    45.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.06;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,3:9:75.57:76,0,216
1    15616183    rs487338    T    C    108.05    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.61;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462113    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:138,0,26
1    15639581    rs10489962    A    G    425.40    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=45;Dels=0.0;FS=4.376;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.176;QD=9.45;ReadPosRankSum=-0.246;SNPEFF_AMINO_ACID_CHANGE=I356M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15639553_15639683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358897    GT:AD:DP:GQ:PL    0/1:28,17:45:99:455,0,940
1    15650784    rs3765354    T    G    241.48    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.723;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.988;QD=11.5;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358897    GT:AD:DP:GQ:PL    0/1:10,11:21:99:271,0,313
1    15650791    rs3765355    G    C    357.93    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.093;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.03;MQ0=0;MQRankSum=-0.651;QD=14.91;ReadPosRankSum=-0.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358897    GT:AD:DP:GQ:PL    0/1:11,13:24:99:388,0,339
1    15651062    rs3765356    A    G    638.49    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=60.0;MQ0=0;MQRankSum=-0.74;QD=9.25;ReadPosRankSum=-0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358897    GT:AD:DP:GQ:PL    0/1:43,26:69:99:668,0,1127
1    15653503    rs7532559    A    G    104.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=11.6;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358897    GT:AD:DP:GQ:PL    0/1:4,5:9:99:134,0,102
1    15653563    rs3765357    C    T    261.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.589;QD=21.8;ReadPosRankSum=-1.109;SNPEFF_AMINO_ACID_CHANGE=H164;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15653555_15653638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401090    GT:AD:DP:GQ:PL    0/1:3,9:12:89.08:292,0,89
1    15668276    rs763821    G    A    663.28    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.788;DB;DP=56;Dels=0.0;FS=10.268;HRun=1;HaplotypeScore=0.734;MQ=58.67;MQ0=0;MQRankSum=-0.045;QD=11.84;ReadPosRankSum=2.45;SNPEFF_AMINO_ACID_CHANGE=G651R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15668232_15668389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358897    GT:AD:DP:GQ:PL    0/1:30,26:56:99:693,0,969
1    15687059    rs4661330    A    G    745.03    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=76;Dels=0.0;FS=6.675;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.422;QD=9.8;ReadPosRankSum=-1.134;SNPEFF_AMINO_ACID_CHANGE=E154G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15686974_15687199;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314668    GT:AD:DP:GQ:PL    0/1:47,29:76:99:775,0,1509
1    15709669    rs45598134    C    T    731.60    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.168;DB;DP=37;Dels=0.0;FS=1.458;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.82;QD=19.77;ReadPosRankSum=0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314668    GT:AD:DP:GQ:PL    0/1:11,26:37:99:762,0,307
1    15714809    rs4661625    G    C    34.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=0.736;QD=11.56;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314668    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:66,6,0
1    15723843    rs2294490    G    A    3335.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7552;MQ=59.52;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=L1355;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15723793_15724622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417793    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3336,244,0
1    15724033    rs2253372    A    G    1116    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=36.0;ReadPosRankSum=-0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FHAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375998    GT:AD:DP:GQ:PL    1/1:1,30:31:51.71:1149,52,0
1    15754484    rs2473356    T    C    74.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.453;QD=7.42;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=L129;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15754394_15754505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375975    GT:AD:DP:GQ:PL    0/1:5,5:10:99:104,0,177
1    15769876    rs79878581    G    GC    9576.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=229;FS=0.0;HRun=2;HaplotypeScore=526.8949;IndelType=I;MQ=60.45;MQ0=0;QD=41.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375943    GT:AD:DP:GQ:PL    1/1:3,225:229:99:9577,674,0
1    15772057    rs10927786    G    T    199.87    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.852;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=58.89;MQ0=0;MQRankSum=-0.113;QD=9.52;ReadPosRankSum=0.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476813    GT:AD:DP:GQ:PL    0/1:11,10:21:99:230,0,312
1    15772933    rs555015    A    G    77.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.49;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476813    GT:AD:DP:GQ:PL    0/1:1,3:4:18.55:108,0,19
1    15783096    rs34325326    GA    G    217.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=68.3662;IndelType=D;MQ=37.32;MQ0=0;QD=21.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359621    GT:AD:DP:GQ:PL    1/1:2,8:10:29.99:259,30,0
1    15783117    rs34442950    C    CA    587.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=60.8904;IndelType=I;MQ=46.0;MQ0=0;QD=41.99;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359621    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:630,42,0
1    15788269    rs3737696    A    C    1731.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497590    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1765,132,0
1    15789297    rs3815787    A    C    689.24    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.071;DB;DP=53;Dels=0.0;FS=5.655;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.596;QD=13.0;ReadPosRankSum=-0.234;SNPEFF_AMINO_ACID_CHANGE=A136;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15789228_15789356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375924    GT:AD:DP:GQ:PL    0/1:24,29:53:99:719,0,740
1    15789446    rs3815788    C    G    369.68    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.127;QD=19.46;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359621    GT:AD:DP:GQ:PL    0/1:7,12:19:99:400,0,236
1    15789450    rs3815789    T    A    383.11    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.254;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.127;QD=20.16;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359621    GT:AD:DP:GQ:PL    0/1:7,12:19:99:413,0,233
1    15789861    rs7555510    T    C    819.90    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.124;DB;DP=66;Dels=0.0;FS=3.854;HRun=1;HaplotypeScore=1.6006;MQ=48.11;MQ0=3;MQRankSum=-1.183;QD=12.42;ReadPosRankSum=0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459653    GT:AD:DP:GQ:PL    0/1:31,34:66:99:850,0,907
1    15790013    rs3181471    G    A    410.96    MQFilter40    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.609;DB;DP=60;Dels=0.0;FS=9.605;HRun=0;HaplotypeScore=0.0;MQ=32.34;MQ0=13;MQRankSum=0.124;QD=6.85;ReadPosRankSum=0.236;SNPEFF_AMINO_ACID_CHANGE=L163;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15789881_15790017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359621    GT:AD:DP:GQ:PL    0/1:37,23:60:99:441,0,798
1    15798316    rs4661632    C    T    72.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=14.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359621    GT:AD:DP:GQ:PL    1/1:0,5:5:12:105,12,0
1    15798317    rs4661633    A    G    72.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359621    GT:AD:DP:GQ:PL    1/1:0,4:4:12:105,12,0
1    15808198    rs7520335    C    T    1240.13    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.078;DB;DP=92;Dels=0.0;FS=10.745;HRun=0;HaplotypeScore=0.9894;MQ=58.14;MQ0=0;MQRankSum=-0.784;QD=13.48;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=R68C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15808140_15808244;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375909    GT:AD:DP:GQ:PL    0/1:48,44:92:99:1270,0,1303
1    15808289    rs4661634    C    T    681.23    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=42;Dels=0.0;FS=5.464;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.113;QD=16.22;ReadPosRankSum=-1.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375909    GT:AD:DP:GQ:PL    0/1:20,22:42:99:711,0,653
1    15808702    rs4661635    C    T    191.45    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.793;DB;DP=35;Dels=0.0;FS=1.478;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.491;QD=5.47;ReadPosRankSum=-1.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375909    GT:AD:DP:GQ:PL    0/1:26,9:35:99:221,0,760
1    15808767    rs3820071    G    A    466.23    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=45;Dels=0.0;FS=1.205;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.482;QD=10.36;ReadPosRankSum=-0.241;SNPEFF_AMINO_ACID_CHANGE=G79R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15808760_15808888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375910    GT:AD:DP:GQ:PL    0/1:27,17:45:99:496,0,829
1    15808872    rs3766160    G    A    307.78    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.023;DB;DP=28;Dels=0.0;FS=3.556;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.395;QD=10.99;ReadPosRankSum=0.487;SNPEFF_AMINO_ACID_CHANGE=D114N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15808760_15808888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375910    GT:AD:DP:GQ:PL    0/1:16,12:28:99:338,0,528
1    15809036    rs3766161    G    A    77.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.45;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422901    GT:AD:DP:GQ:PL    0/1:2,3:5:64.98:107,0,65
1    15809706    rs12129367    T    C    654.52    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DB;DP=41;Dels=0.0;FS=1.979;HRun=0;HaplotypeScore=2.4676;MQ=52.24;MQ0=0;MQRankSum=1.072;QD=15.96;ReadPosRankSum=-1.442;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422901    GT:AD:DP:GQ:PL    0/1:17,24:41:99:685,0,494
1    15809876    rs10927792    G    A    787.48    MQFilter40    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.321;DB;DP=68;Dels=0.0;FS=3.754;HRun=0;HaplotypeScore=0.0;MQ=38.64;MQ0=7;MQRankSum=0.258;QD=11.58;ReadPosRankSum=0.164;SNPEFF_AMINO_ACID_CHANGE=T158;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15809759_15809895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375910    GT:AD:DP:GQ:PL    0/1:35,33:68:99:817,0,713
1    15812432    rs6429745    A    G    3877.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=31.02;SNPEFF_AMINO_ACID_CHANGE=Q177R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15812396_15812541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CELA2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375910    GT:AD:DP:GQ:PL    1/1:0,125:125:99:3877,304,0
1    15813751    rs2011159    C    T    1207.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546424    GT:AD:DP:GQ:PL    1/1:0,33:34:93.28:1241,93,0
1    15813969    rs3737704    A    C    626.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.97;DB;DP=49;Dels=0.0;FS=3.594;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-1.707;QD=12.78;ReadPosRankSum=-1.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333868    GT:AD:DP:GQ:PL    0/1:28,21:49:99:656,0,847
1    15814186    rs6667862    C    T    40.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=10.25;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333868    GT:AD:DP:GQ:PL    0/1:2,2:4:48.97:71,0,49
1    15820576    rs2020900    T    A    122.47    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=17.5;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447522    GT:AD:DP:GQ:PL    0/1:2,5:7:59.57:152,0,60
1    15832383    rs1800614    G    T    396.08    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.89;MQ0=0;MQRankSum=0.579;QD=18.86;ReadPosRankSum=2.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546969    GT:AD:DP:GQ:PL    0/1:9,12:21:99:426,0,245
1    15832543    rs1052576    T    C    490.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.245;DB;DP=44;Dels=0.0;FS=8.522;HRun=1;HaplotypeScore=1.6006;MQ=59.48;MQ0=0;MQRankSum=-0.377;QD=11.16;ReadPosRankSum=0.075;SNPEFF_AMINO_ACID_CHANGE=Q138R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15832485_15832574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375890    GT:AD:DP:GQ:PL    0/1:22,22:44:99:521,0,640
1    15834297    rs2020903    G    A    326.27    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.55;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=58.27;MQ0=0;MQRankSum=-1.333;QD=12.08;ReadPosRankSum=-0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333868    GT:AD:DP:GQ:PL    0/1:14,13:27:99:356,0,410
1    15834491    rs4646032    G    A    271.46    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=23;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.246;QD=11.8;ReadPosRankSum=-1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333868    GT:AD:DP:GQ:PL    0/1:12,11:23:99:301,0,441
1    15844615    rs1820204    A    G    837    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.32;MQ0=0;MQRankSum=0.771;QD=12.31;ReadPosRankSum=-0.408;SNPEFF_AMINO_ACID_CHANGE=F136;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15844605_15844890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333868    GT:AD:DP:GQ:PL    0/1:35,33:68:99:867,0,1030
1    15844926    rs1820205    C    T    573.10    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.52;DB;DP=37;Dels=0.0;FS=11.389;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.777;QD=15.49;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333868    GT:AD:DP:GQ:PL    0/1:20,17:37:99:603,0,612
1    15860563    rs6703016    T    A    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375838    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
1    15873386    rs7515244    A    G    443.31    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.908;DB;DP=34;Dels=0.0;FS=3.622;HRun=0;HaplotypeScore=2.21;MQ=54.32;MQ0=0;MQRankSum=-0.332;QD=13.04;ReadPosRankSum=0.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375838    GT:AD:DP:GQ:PL    0/1:14,20:34:99:473,0,361
1    15874961    rs2295626    T    A    322.89    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.091;QD=14.68;ReadPosRankSum=0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375838    GT:AD:DP:GQ:PL    0/1:10,11:22:99:353,0,356
1    15890342    rs138970347    CA    C    91.36    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.336;DB;DP=40;FS=0.0;HRun=16;HaplotypeScore=246.0521;IndelType=D;MQ=53.3;MQ0=0;MQRankSum=-0.691;QD=2.28;ReadPosRankSum=-0.875;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375838    GT:AD:DP:GQ:PL    0/1:24,10:40:99:130,0,229
1    15893862    rs2042367    C    T    39.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.85;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375826    GT:AD:DP:GQ:PL    0/1:2,3:5:69.04:69,0,69
1    15909547    rs6429756    G    A    42.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.71;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375826    GT:AD:DP:GQ:PL    0/1:2,2:4:31.62:73,0,32
1    15909624    rs111921608    TGAGTACAG    T    346.51    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=115.9891;IndelType=D;MQ=50.65;MQ0=0;MQRankSum=-3.123;QD=21.66;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375826    GT:AD:DP:GQ:PL    0/1:11,5:16:99:386,0,1291
1    15909850    rs6429757    C    G    120.94    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6617;MQ=57.66;MQ0=0;MQRankSum=1.347;QD=6.05;ReadPosRankSum=-1.664;SNPEFF_AMINO_ACID_CHANGE=G105R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15909688_15909890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375826    GT:AD:DP:GQ:PL    0/1:13,7:20:99:151,0,464
1    15909895    rs6429758    A    G    158.46    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=57.53;MQ0=0;MQRankSum=1.535;QD=8.34;ReadPosRankSum=1.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375826    GT:AD:DP:GQ:PL    0/1:13,6:19:99:188,0,398
1    15910003    rs6429759    C    T    67.80    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.56;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375826    GT:AD:DP:GQ:PL    0/1:2,3:5:63.31:98,0,63
1    15910020    rs6429760    C    T    76.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.35;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375826    GT:AD:DP:GQ:PL    0/1:2,3:5:62.06:107,0,62
1    15959886    rs3795762    C    G    2420.51    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.614;DB;DP=130;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7338;MQ=59.65;MQ0=0;MQRankSum=-0.646;QD=18.62;ReadPosRankSum=0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480945    GT:AD:DP:GQ:PL    0/1:56,74:130:99:2451,0,1856
1    15986479    .    C    T    1573.33    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.239;DP=123;Dels=0.0;FS=3.348;HRun=1;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=0.519;QD=12.79;ReadPosRankSum=-0.019;SNPEFF_AMINO_ACID_CHANGE=P39L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_15986364_15988217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSC1A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345034    GT:AD:DP:GQ:PL    0/1:64,59:123:99:1603,0,2068
1    16053493    rs41393951    G    A    336.22    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=25;Dels=0.0;FS=1.906;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=13.45;ReadPosRankSum=-0.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375793    GT:AD:DP:GQ:PL    0/1:12,13:25:99:366,0,313
1    16055039    rs12724755    C    T    50.09    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.65;QD=3.34;ReadPosRankSum=1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375793    GT:AD:DP:GQ:PL    0/1:12,3:15:80.08:80,0,431
1    16055732    rs6429772    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.99;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375793    GT:AD:DP:GQ:PL    0/1:3,3:6:71.96:72,0,87
1    16056364    rs3817269    G    A    1432.28    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=1.489;DB;DP=89;Dels=0.0;FS=5.504;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=1.196;QD=16.09;ReadPosRankSum=-0.535;SNPEFF_AMINO_ACID_CHANGE=T696;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16056292_16056424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375793    GT:AD:DP:GQ:PL    0/1:41,48:89:99:1462,0,1234
1    16064411    rs937592    T    C    412.62    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.197;DB;DP=30;Dels=0.0;FS=5.684;HRun=1;HaplotypeScore=0.0;MQ=52.82;MQ0=0;MQRankSum=-1.908;QD=13.75;ReadPosRankSum=-1.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375793    GT:AD:DP:GQ:PL    0/1:14,16:30:99:443,0,397
1    16069644    rs11584945    C    T    175    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_AMINO_ACID_CHANGE=L97;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16069515_16069689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM82;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375782    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
1    16096934    rs10927851    C    T    1092.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=28.75;SNPEFF_AMINO_ACID_CHANGE=S191F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16096904_16097073;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLIM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375766    GT:AD:DP:GQ:PL    1/1:0,37:38:93.26:1126,93,0
1    16097237    rs10803398    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431771    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    16161867    rs4661662    A    G    676.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-169K16.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317122    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:709,54,0
1    16162186    rs4661343    T    C    457.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=30.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-169K16.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317122    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:490,39,0
1    16162412    rs35098215    A    AGC    767.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.193;DB;DP=25;FS=12.553;HRun=0;HaplotypeScore=85.1158;IndelType=I;MQ=60.43;MQ0=0;MQRankSum=0.964;QD=30.71;ReadPosRankSum=1.542;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-169K16.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317122    GT:AD:DP:GQ:PL    1/1:9,15:25:22.38:810,22,0
1    16162471    rs4661666    C    A    261.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-169K16.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317122    GT:AD:DP:GQ:PL    1/1:0,9:10:27.06:294,27,0
1    16256007    rs848209    T    C    1762.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=L1091P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16254586_16262761;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375759    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1796,132,0
1    16259813    rs848210    A    G    676.15    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.771;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7306;MQ=60.0;MQ0=0;MQRankSum=-1.025;QD=12.07;ReadPosRankSum=-0.08;SNPEFF_AMINO_ACID_CHANGE=N2360D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16254586_16262761;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375759    GT:AD:DP:GQ:PL    0/1:29,27:56:99:706,0,856
1    16263452    rs848212    A    G    32.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=8.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375729    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:62,0,33
1    16264330    .    C    G    150.46    FSFilter60    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.081;DP=71;Dels=0.0;FS=94.671;HRun=3;HaplotypeScore=0.9983;MQ=51.65;MQ0=0;MQRankSum=-4.131;QD=2.12;ReadPosRankSum=-1.377;SNPEFF_AMINO_ACID_CHANGE=G3511;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16264307_16264501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375759    GT:AD:DP:GQ:PL    0/1:45,26:71:99:180,0,1487
1    16265422    rs848214    A    G    646.65    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=3.419;DB;DP=44;Dels=0.0;FS=7.144;HRun=1;HaplotypeScore=1.9158;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=14.7;ReadPosRankSum=0.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375729    GT:AD:DP:GQ:PL    0/1:18,25:44:99:677,0,523
1    16272250    rs848217    A    G    102.67    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.039;DB;DP=22;Dels=0.0;FS=2.128;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.596;QD=4.67;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=A125;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16272210_16272335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537142    GT:AD:DP:GQ:PL    0/1:15,7:22:99:133,0,467
1    16342237    rs1739840    A    G    242.03    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=17;Dels=0.0;FS=2.246;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.513;QD=14.24;ReadPosRankSum=-0.049;SNPEFF_AMINO_ACID_CHANGE=T112;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16340523_16342254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411503    GT:AD:DP:GQ:PL    0/1:7,10:17:99:272,0,210
1    16342350    rs761759    A    T    39.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545268    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:69,0,30
1    16343835    rs1763596    C    T    170.03    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=13.08;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311890    GT:AD:DP:GQ:PL    0/1:7,6:13:99:200,0,230
1    16344360    rs732286    A    G    135.68    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=2.533;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=11.31;ReadPosRankSum=1.0;SNPEFF_AMINO_ACID_CHANGE=A121;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16344260_16345285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375714    GT:AD:DP:GQ:PL    0/1:7,5:12:99:166,0,244
1    16344402    rs945416    G    A    141.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.154;QD=10.14;ReadPosRankSum=-0.545;SNPEFF_AMINO_ACID_CHANGE=S107;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16344260_16345285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375714    GT:AD:DP:GQ:PL    0/1:7,7:14:99:172,0,248
1    16344494    rs1572381    G    A    70.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.38;QD=7.85;ReadPosRankSum=-1.38;SNPEFF_AMINO_ACID_CHANGE=L77F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16344260_16345285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375714    GT:AD:DP:GQ:PL    0/1:3,6:9:56.78:101,0,57
1    16344625    rs945417    C    G    213.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=14;Dels=0.0;FS=4.593;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.421;QD=15.28;ReadPosRankSum=0.663;SNPEFF_AMINO_ACID_CHANGE=R33T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16344260_16345285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375714    GT:AD:DP:GQ:PL    0/1:7,7:14:99:244,0,202
1    16344664    rs872222    G    A    139.65    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.387;QD=12.7;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=A20V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16344260_16345285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375714    GT:AD:DP:GQ:PL    0/1:5,6:11:99:170,0,134
1    16351137    rs9442190    C    G    103.76    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.75;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477360    GT:AD:DP:GQ:PL    0/1:1,4:5:27.63:134,0,28
1    16351275    rs10927887    A    G    467.04    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=38;Dels=0.0;FS=5.133;HRun=3;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.95;QD=12.29;ReadPosRankSum=-0.833;SNPEFF_AMINO_ACID_CHANGE=R83G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16351258_16351386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331433    GT:AD:DP:GQ:PL    0/1:18,20:38:99:497,0,533
1    16352492    rs11584665    G    A    920.92    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=6.262;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6975;MQ=60.0;MQ0=0;MQRankSum=-0.205;QD=15.35;ReadPosRankSum=0.812;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477360    GT:AD:DP:GQ:PL    0/1:32,28:60:99:951,0,882
1    16352937    rs1010069    G    A    102.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.421;QD=12.84;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477360    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,144
1    16353400    rs9442216    T    C    48.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.0;MQ0=0;MQRankSum=1.537;QD=8.13;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495784    GT:AD:DP:GQ:PL    0/1:3,3:6:78.77:79,0,88
1    16354280    rs10927889    G    C    30.47    MQFilter40;QDFilter2    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=45;Dels=0.0;FS=5.643;HRun=1;HaplotypeScore=0.0;MQ=14.93;MQ0=33;MQRankSum=-1.134;QD=0.68;ReadPosRankSum=1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495784    GT:AD:DP:GQ:PL    0/1:29,16:45:60.46:60,0,246
1    16356501    rs1805152    G    A    162.57    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=19;Dels=0.0;FS=9.556;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.115;QD=8.56;ReadPosRankSum=0.206;SNPEFF_AMINO_ACID_CHANGE=A404T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16356460_16356570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439316    GT:AD:DP:GQ:PL    0/1:11,8:19:99:193,0,360
1    16356583    rs3737218    C    T    222.32    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=12;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.309;QD=18.53;ReadPosRankSum=-1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491433    GT:AD:DP:GQ:PL    0/1:5,7:12:99:252,0,149
1    16358148    rs2015509    T    C    244.35    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=13.57;ReadPosRankSum=-1.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491433    GT:AD:DP:GQ:PL    0/1:10,8:18:99:274,0,359
1    16358685    rs6669935    C    G    183.05    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.902;DB;DP=25;Dels=0.0;FS=7.144;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.768;QD=7.32;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491433    GT:AD:DP:GQ:PL    0/1:17,8:25:99:213,0,490
1    16358932    rs10803407    T    C    641.27    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.651;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=58.38;MQ0=0;MQRankSum=-0.184;QD=12.33;ReadPosRankSum=-0.748;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491433    GT:AD:DP:GQ:PL    0/1:28,24:52:99:671,0,873
1    16359052    rs10927893    A    G    674.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491433    GT:AD:DP:GQ:PL    1/1:0,44:44:54.16:707,54,0
1    16359106    rs10803408    C    T    202.89    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.755;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7128;MQ=57.87;MQ0=0;MQRankSum=-1.377;QD=9.22;ReadPosRankSum=0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491433    GT:AD:DP:GQ:PL    0/1:9,13:22:99:233,0,234
1    16359123    rs9442217    A    G    331.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.358;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.047;QD=18.43;ReadPosRankSum=-0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491433    GT:AD:DP:GQ:PL    0/1:6,12:18:99:362,0,189
1    16359827    rs3738633    A    G    636.66    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.526;DB;DP=42;Dels=0.0;FS=3.118;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.474;QD=15.16;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491433    GT:AD:DP:GQ:PL    0/1:20,22:42:99:667,0,626
1    16361875    rs11807054    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.68;MQ0=1;QD=11.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331433    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
1    16361916    rs11811753    G    A    52.51    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.09;MQ0=1;MQRankSum=-0.727;QD=10.5;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331433    GT:AD:DP:GQ:PL    0/1:1,4:5:30.62:83,0,31
1    16362621    rs2009044    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331433    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    16363042    rs2008876    C    T    236.34    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.51;MQ0=1;MQRankSum=-0.785;QD=9.85;ReadPosRankSum=0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331433    GT:AD:DP:GQ:PL    0/1:14,10:24:99:266,0,430
1    16363158    rs74057560    G    A    104.79    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=1.337;DB;DP=31;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=0.0;MQ=47.6;MQ0=1;MQRankSum=-3.447;QD=3.38;ReadPosRankSum=-3.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331433    GT:AD:DP:GQ:PL    0/1:22,9:31:99:135,0,683
1    16363237    rs143626665    C    T    156.43    MQFilter40    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=2.172;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.179;MQ=33.76;MQ0=6;MQRankSum=-1.077;QD=3.64;ReadPosRankSum=-1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCNKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331433    GT:AD:DP:GQ:PL    0/1:32,11:43:99:186,0,620
1    16366234    rs1815526    T    G    62.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.49;MQ0=1;QD=15.58;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:94,9,0
1    16371067    rs2015352    G    T    176.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_AMINO_ACID_CHANGE=R27L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16370981_16371087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:209,15,0
1    16371872    rs6604908    C    G    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    16371932    rs6604909    A    C    173.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
1    16372003    rs6604910    G    C    468.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:502,36,0
1    16372283    rs6604911    T    G    110.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=22.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:143,12,0
1    16372911    rs2014848    G    A    282.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
1    16372971    rs2014841    G    A    697.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:731,57,0
1    16373124    rs5257    A    G    1610.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.29;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=S108;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16373030_16373158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1643,132,0
1    16373199    rs35820664    CCTT    C    1953.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=267.1273;IndelType=D;MQ=56.9;MQ0=0;QD=45.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:2,40:43:99:1996,117,0
1    16373282    rs2095540    A    G    281.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=64.64;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
1    16374185    rs869704    G    A    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    16374330    rs945403    A    G    661.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.15;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,22:22:60.14:695,60,0
1    16374533    rs2014562    G    C    874.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=59.11;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=G164;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16374400_16374539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:908,72,0
1    16374622    rs2863440    C    G    255.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
1    16374656    rs2902490    A    G    200.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
1    16374994    rs1889788    C    T    1188.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.85;MQ0=16;QD=21.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:13,42:55:99:1221,99,0
1    16375063    rs1889789    C    G    144.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.31;MQ0=5;QD=3.61;SNPEFF_AMINO_ACID_CHANGE=A214G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16374999_16375077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375679    GT:AD:DP:GQ:PL    1/1:2,38:40:20.95:178,21,0
1    16375064    rs1889790    A    C    109.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.98;MQ0=4;QD=2.87;SNPEFF_AMINO_ACID_CHANGE=A214;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16374999_16375077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375679    GT:AD:DP:GQ:PL    1/1:2,36:38:17.94:142,18,0
1    16375838    rs7545067    C    G    283.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=28.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:316,27,0
1    16376191    rs7367494    C    T    877.78    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.1;MQ0=28;QD=15.13;SNPEFF_AMINO_ACID_CHANGE=A118V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16376113_16376197;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375667    GT:AD:DP:GQ:PL    1/1:18,40:58:81.22:911,81,0
1    16376230    rs59006537    A    AT    1840.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=526.3656;IndelType=I;MQ=25.89;MQ0=11;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:12,44:43:99:1883,129,0
1    16376238    rs34589727    TC    T    1534.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=6;HaplotypeScore=682.1807;IndelType=D;MQ=30.84;MQ0=7;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:11,50:52:99:1576,147,0
1    16376278    rs7365182    G    A    2342.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.8;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2376,196,0
1    16376319    rs7368151    T    C    3839.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=50.21;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=C123;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16376310_16376411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375667    GT:AD:DP:GQ:PL    1/1:0,115:116:99:3839,304,0
1    16376458    rs7368166    T    C    1591.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.02;FS=0.0;HRun=6;HaplotypeScore=0.9665;MQ=52.75;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1624,135,0
1    16376719    rs10754899    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    16376831    rs10803412    C    T    204.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
1    16377108    rs35480349    G    C    714.89    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.064;DB;DP=50;Dels=0.0;FS=3.126;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.259;QD=14.3;ReadPosRankSum=1.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:24,26:50:99:745,0,811
1    16377900    rs148467822    A    G    386.82    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.409;DB;DP=45;Dels=0.0;FS=4.03;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.484;QD=8.6;ReadPosRankSum=0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:26,19:45:99:417,0,933
1    16377935    rs6650117    A    G    799.89    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.517;DB;DP=82;Dels=0.0;FS=3.657;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=9.75;ReadPosRankSum=-0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:47,35:82:99:830,0,1475
1    16379008    rs2050522    C    T    317.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:351,27,0
1    16380196    rs5253    T    C    1283.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.27;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=M393T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16380134_16380267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375667    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1317,105,0
1    16380243    rs2275166    A    G    236.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.354;DB;DP=25;Dels=0.0;FS=9.379;HRun=0;HaplotypeScore=3.4099;MQ=53.71;MQ0=0;MQRankSum=-0.22;QD=9.48;ReadPosRankSum=0.157;SNPEFF_AMINO_ACID_CHANGE=K409E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16380134_16380267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375667    GT:AD:DP:GQ:PL    0/1:15,9:25:99:267,0,403
1    16380252    rs2275167    C    T    200.80    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=26;Dels=0.0;FS=8.888;HRun=1;HaplotypeScore=3.4099;MQ=54.78;MQ0=0;MQRankSum=-0.437;QD=7.72;ReadPosRankSum=1.252;SNPEFF_AMINO_ACID_CHANGE=L412;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16380134_16380267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375667    GT:AD:DP:GQ:PL    0/1:18,8:26:99:231,0,492
1    16381792    rs12047858    T    A    78.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.74;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:109,0,29
1    16381816    rs12029508    C    T    83.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.92;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:1,3:4:31.54:114,0,32
1    16382086    rs2297727    C    T    176.87    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.61;ReadPosRankSum=-1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:6,7:13:99:207,0,208
1    16382791    rs12023153    G    C    195.90    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.64;MQ0=0;MQRankSum=-3.031;QD=11.52;ReadPosRankSum=-1.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:9,8:17:99:226,0,265
1    16382827    rs77508204    CTCT    C    659.57    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=5.287;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=450.1227;IndelType=D;MQ=49.96;MQ0=0;MQRankSum=-5.315;QD=16.49;ReadPosRankSum=1.698;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:25,15:40:99:699,0,1540
1    16382834    rs61769891    T    A    320.72    HaplotypeScoreFilter13    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=44;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=30.9283;MQ=48.6;MQ0=0;MQRankSum=-5.639;QD=7.13;ReadPosRankSum=0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:25,19:44:99:351,0,899
1    16382877    rs7517792    A    G    1673.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=51.54;MQ0=0;QD=26.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1707,144,0
1    16382880    rs7512547    T    A    884.29    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.316;DB;DP=67;Dels=0.0;FS=1.129;HRun=0;HaplotypeScore=0.8941;MQ=51.58;MQ0=0;MQRankSum=5.395;QD=13.2;ReadPosRankSum=1.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:32,35:67:99:914,0,827
1    16383267    rs12728542    A    G    275.67    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=16;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=48.92;MQ0=0;MQRankSum=-1.27;QD=17.23;ReadPosRankSum=-0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:7,9:16:99:306,0,230
1    16383329    .    T    TC    721.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.226;DP=28;FS=0.0;HRun=6;HaplotypeScore=236.0082;IndelType=I;MQ=34.63;MQ0=5;MQRankSum=-0.377;QD=18.51;ReadPosRankSum=1.432;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:8,31:28:56.46:764,56,0
1    16383336    rs12746138    G    C    69.98    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=21.9716;MQ=33.62;MQ0=5;QD=1.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:0,37:37:11.97:102,12,0
1    16383348    rs61769892    C    T    183.80    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=36;Dels=0.0;FS=4.075;HRun=0;HaplotypeScore=6.2009;MQ=32.62;MQ0=5;MQRankSum=-0.502;QD=5.11;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:18,18:36:99:214,0,324
1    16383448    rs10803415    A    C    679.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=37.92;MQ0=2;QD=22.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:0,30:30:60.15:712,60,0
1    16383515    rs12402924    C    T    51.64    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.5;MQ0=0;MQRankSum=0.358;QD=10.33;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:2,3:5:25.77:82,0,26
1    16383581    rs1057844    G    T    122.96    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=41.62;MQ0=0;MQRankSum=0.736;QD=20.49;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:1,5:6:15.39:153,0,15
1    16383605    rs1057845    A    G    134.90    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.41;MQ0=0;MQRankSum=0.742;QD=19.27;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:1,6:7:15.38:165,0,15
1    16383668    rs6660218    T    G    201.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.14;MQ0=0;QD=28.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
1    16383682    rs1057854    G    C    58.17    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.69;MQ0=0;MQRankSum=0.296;QD=5.82;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=A431P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16383682_16383800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:7,3:10:88.16:88,0,189
1    16383742    rs1057857    C    G    355.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.23;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=P135A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16383733_16383803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431772    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:389,30,0
1    16383808    rs28690440    G    C    30.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.12;MQ0=0;MQRankSum=-0.358;QD=6.03;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:3,2:5:60.15:60,0,103
1    16385248    rs74054903    C    T    43.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.54;MQ0=2;QD=8.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:2,3:5:6.02:74,6,0
1    16385250    rs74054904    A    G    38.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.54;MQ0=2;QD=7.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,5:5:6.01:69,6,0
1    16385797    rs3978478    C    G    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    16385815    rs2019456    G    A    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
1    16385980    rs3884058    G    A    579.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.85;MQ0=1;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:612,48,0
1    16386008    rs2863452    T    C    484.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=34.97;MQ0=1;QD=21.05;SNPEFF_AMINO_ACID_CHANGE=Q181;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16385989_16386099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:0,23:23:42.11:517,42,0
1    16386247    rs2095543    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.11;MQ0=1;QD=8.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
1    16386416    rs9442230    G    A    240.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.67;MQ0=1;QD=26.74;SNPEFF_AMINO_ACID_CHANGE=D133;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16386364_16386546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:274,21,0
1    16386447    rs11576236    G    C    199.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.18;MQ0=0;QD=22.13;SNPEFF_AMINO_ACID_CHANGE=P123R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16386364_16386546;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:232,18,0
1    16388485    rs58894453    T    C    49.41    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.54;MQ0=0;MQRankSum=0.358;QD=9.88;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:2,3:5:54.41:79,0,54
1    16388534    rs2863454    C    T    55.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.08;MQ0=0;MQRankSum=-0.922;QD=6.99;ReadPosRankSum=-1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:4,4:8:85.92:86,0,133
1    16388556    rs2863455    C    T    326.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.01;MQ0=0;QD=23.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,14:14:30.08:360,30,0
1    16388565    rs7524413    C    G    168.65    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.16;MQ0=1;MQRankSum=2.938;QD=11.24;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:7,8:15:99:199,0,132
1    16388580    rs3978467    C    T    236.62    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=22;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=42.52;MQ0=1;MQRankSum=-2.507;QD=10.76;ReadPosRankSum=-0.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:10,12:22:99:267,0,194
1    16388646    rs2863456    T    C    555.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8544;MQ=41.42;MQ0=1;QD=30.85;SNPEFF_AMINO_ACID_CHANGE=R72;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16388594_16388687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:588,48,0
1    16388709    rs28570004    G    T    249.13    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=45.88;MQ0=0;MQRankSum=0.898;QD=20.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:2,8:12:48.49:279,0,48
1    16388737    rs3978468    G    A    58.67    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.71;MQ0=0;MQRankSum=-0.382;QD=5.33;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    0/1:8,3:11:88.67:89,0,281
1    16388766    rs3978469    C    T    81.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.09;MQ0=0;QD=27.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCNKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331579    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
1    16389026    rs2863458    T    C    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.53;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=K48E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16388994_16389029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375662    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,147
1    16451767    rs3754334    G    A    361.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=I958;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16450832_16451815;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358432    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:395,30,0
1    16461336    rs7552165    C    T    78.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=13.01;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358432    GT:AD:DP:GQ:PL    0/1:2,4:6:63.16:108,0,63
1    16461739    rs150384340    G    A    386.10    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=12.07;ReadPosRankSum=-0.703;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358432    GT:AD:DP:GQ:PL    0/1:18,14:32:99:416,0,571
1    16464673    rs2230597    G    A    416.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_AMINO_ACID_CHANGE=P329;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16464348_16464680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358432    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:449,36,0
1    16474701    rs6603867    G    A    209.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461614    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
1    16474839    rs35519704    AC    A    1745.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.364;DB;DP=58;FS=0.0;HRun=5;HaplotypeScore=154.8034;IndelType=D;MQ=55.01;MQ0=0;MQRankSum=-1.843;QD=30.1;ReadPosRankSum=1.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461614    GT:AD:DP:GQ:PL    1/1:3,55:58:89.36:1788,89,0
1    16475123    rs6678616    C    T    774.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_AMINO_ACID_CHANGE=L191;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16474873_16475542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358432    GT:AD:DP:GQ:PL    1/1:0,25:25:63.18:808,63,0
1    16475126    rs6678618    C    T    768.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_AMINO_ACID_CHANGE=A190;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16474873_16475542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358432    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:801,60,0
1    16525056    rs451260    G    T    470.51    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=38;Dels=0.0;FS=7.162;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.634;QD=12.38;ReadPosRankSum=0.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375607    GT:AD:DP:GQ:PL    0/1:20,18:38:99:501,0,582
1    16525549    rs221032    C    T    187.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.64;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375607    GT:AD:DP:GQ:PL    0/1:6,6:12:99:218,0,176
1    16528233    rs221037    G    A    94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375607    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:126,9,0
1    16528721    rs221038    A    G    37.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441785    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
1    16529117    rs221039    T    C    190.50    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.053;QD=11.21;ReadPosRankSum=-1.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441785    GT:AD:DP:GQ:PL    0/1:8,9:17:99:220,0,234
1    16532803    rs221050    G    A    81.14    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.584;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.69;QD=4.51;ReadPosRankSum=-1.434;SNPEFF_AMINO_ACID_CHANGE=S390;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16532675_16532835;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270747    GT:AD:DP:GQ:PL    0/1:14,4:18:99:111,0,416
1    16532848    rs221051    A    G    46.97    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.74;QD=3.61;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=C58;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16532675_16533021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441785    GT:AD:DP:GQ:PL    0/1:10,3:13:76.97:77,0,298
1    16534002    rs221056    C    G    172.08    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.274;DB;DP=25;Dels=0.0;FS=6.761;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.481;QD=6.88;ReadPosRankSum=0.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270747    GT:AD:DP:GQ:PL    0/1:16,9:25:99:202,0,490
1    16534255    rs221057    C    G    257.71    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.028;DB;DP=26;Dels=0.0;FS=3.524;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.985;QD=9.91;ReadPosRankSum=-1.622;SNPEFF_AMINO_ACID_CHANGE=E238Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16534170_16534272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270747    GT:AD:DP:GQ:PL    0/1:14,11:26:99:288,0,441
1    16534646    rs221058    C    G    457.99    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=14.31;ReadPosRankSum=-1.021;SNPEFF_AMINO_ACID_CHANGE=G163R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16534439_16534720;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270747    GT:AD:DP:GQ:PL    0/1:13,19:32:99:488,0,395
1    16534730    rs221059    G    A    280.68    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.95;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.372;QD=14.77;ReadPosRankSum=1.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270747    GT:AD:DP:GQ:PL    0/1:8,11:19:99:311,0,208
1    16542876    rs2273313    A    T    85.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=14.26;ReadPosRankSum=-1.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270747    GT:AD:DP:GQ:PL    0/1:2,4:6:39.10:116,0,39
1    16542937    rs2273312    T    G    263.41    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.488;DB;DP=17;Dels=0.0;FS=2.187;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.163;QD=15.49;ReadPosRankSum=0.705;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270747    GT:AD:DP:GQ:PL    0/1:7,10:17:99:293,0,163
1    16543175    rs221024    A    C    259.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270747    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:293,24,0
1    16558510    .    TTGG    T    79.70    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=3.972;DP=29;FS=0.0;HRun=0;HaplotypeScore=243.8339;IndelType=D;MQ=53.1;MQ0=0;MQRankSum=-3.583;QD=2.75;ReadPosRankSum=0.139;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488510    GT:AD:DP:GQ:PL    0/1:22,7:29:99:119,0,1254
1    16558838    rs6700888    C    A    54.18    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=9.03;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375599    GT:AD:DP:GQ:PL    0/1:1,5:6:29.21:84,0,29
1    16731510    rs525409    C    G    656.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.24;SNPEFF_AMINO_ACID_CHANGE=V232L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16731462_16731599;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540400    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:689,54,0
1    16731609    rs148140651    G    C    254.05    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=34;Dels=0.0;FS=3.477;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=7.47;ReadPosRankSum=-1.842;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335496    GT:AD:DP:GQ:PL    0/1:21,13:34:99:284,0,549
1    16731646    rs3106498    T    C    615.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335496    GT:AD:DP:GQ:PL    1/1:0,22:22:57.10:648,57,0
1    16767359    rs114024565    A    G    406.31    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=20;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.371;QD=20.32;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263498    GT:AD:DP:GQ:PL    0/1:6,14:20:99:436,0,170
1    16778265    rs279782    G    T    1169.57    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.842;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6208;MQ=59.39;MQ0=0;MQRankSum=0.744;QD=16.95;ReadPosRankSum=-1.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508680    GT:AD:DP:GQ:PL    0/1:27,42:69:99:1200,0,844
1    16802890    rs696095    G    A    253.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.728;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.59;MQ0=0;MQRankSum=0.654;QD=7.05;ReadPosRankSum=-2.064;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CROCCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263511    GT:AD:DP:GQ:PL    0/1:24,12:36:99:284,0,706
1    16803267    rs156846    T    C    41.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.69;MQ0=0;QD=20.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CROCCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263511    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    16812082    rs2418644    A    G    298.82    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.004;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.639;QD=21.34;ReadPosRankSum=-0.091;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CROCCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263511    GT:AD:DP:GQ:PL    0/1:2,12:14:51.30:329,0,51
1    16862132    rs2992345    T    C    34.20    MQFilter40;QDFilter2    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.05;MQ0=8;MQRankSum=-2.589;QD=1.71;ReadPosRankSum=1.294;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:9,11:20:64.19:64,0,307
1    16862141    rs2991727    C    G    87.18    MQFilter40    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=35.57;MQ0=9;MQRankSum=-3.356;QD=3.01;ReadPosRankSum=-1.582;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:12,17:29:99:117,0,372
1    16862158    rs2990571    C    T    132.53    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.075;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=37.46;MQ0=9;MQRankSum=-2.37;QD=3.16;ReadPosRankSum=-0.646;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:24,18:42:99:163,0,696
1    16862186    rs6698704    G    A    69.83    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=1.155;DB;DP=63;Dels=0.0;FS=8.125;HRun=0;HaplotypeScore=0.5784;MQ=42.13;MQ0=9;MQRankSum=-1.006;QD=1.11;ReadPosRankSum=0.286;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:54,9:63:99:100,0,1325
1    16862212    rs79311784    C    T    243.45    PASS    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.654;DB;DP=94;Dels=0.0;FS=3.04;HRun=0;HaplotypeScore=1.8308;MQ=43.84;MQ0=9;MQRankSum=1.989;QD=2.59;ReadPosRankSum=0.986;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:77,17:94:99:273,0,1829
1    16862282    rs11260784    G    A    218.48    QDFilter2    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.878;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.0254;MQ=40.78;MQ0=12;MQRankSum=-2.028;QD=1.56;ReadPosRankSum=-0.315;SNPEFF_AMINO_ACID_CHANGE=M1I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_1_16862255_16862619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:119,21:140:99:248,0,2824
1    16862296    rs1759227    G    C    1043.30    MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=135;Dels=0.0;FS=4.775;HRun=1;HaplotypeScore=2.21;MQ=38.48;MQ0=11;MQRankSum=0.146;QD=7.73;ReadPosRankSum=1.463;SNPEFF_AMINO_ACID_CHANGE=R6P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16862255_16862619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:78,57:135:99:1073,0,1693
1    16862340    .    G    A    501.78    MQFilter40    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DP=103;Dels=0.0;FS=5.622;HRun=1;HaplotypeScore=0.8321;MQ=35.94;MQ0=6;MQRankSum=0.526;QD=4.87;ReadPosRankSum=-0.812;SNPEFF_AMINO_ACID_CHANGE=A21T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16862255_16862619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:72,31:103:99:532,0,1613
1    16862454    rs71248115    T    G    347.77    MQFilter40    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=37.4;MQ0=0;MQRankSum=-0.369;QD=12.42;ReadPosRankSum=0.875;SNPEFF_AMINO_ACID_CHANGE=S59A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16862255_16862619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:13,15:28:99:378,0,280
1    16862461    rs145386412    T    A    316.45    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.914;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=38.77;MQ0=0;MQRankSum=-0.582;QD=12.66;ReadPosRankSum=0.305;SNPEFF_AMINO_ACID_CHANGE=V61D;SNPEFF_CODON_CHANGE=gTt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16862255_16862619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:10,15:25:99:346,0,216
1    16862502    rs141629643    A    G    204.22    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=32.54;MQ0=0;MQRankSum=1.044;QD=20.42;ReadPosRankSum=1.393;SNPEFF_AMINO_ACID_CHANGE=N75D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16862255_16862619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    1/1:1,9:10:21.04:237,21,0
1    16863141    .    C    A    98.99    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.4931;MQ=47.89;MQ0=0;MQRankSum=2.037;QD=9.0;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,134
1    16863259    rs114741004    T    G    45.24    QDFilter2    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.948;DB;DP=65;Dels=0.0;FS=4.987;HRun=0;HaplotypeScore=6.7527;MQ=50.71;MQ0=3;MQRankSum=-5.411;QD=0.7;ReadPosRankSum=1.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:48,17:65:75.23:75,0,1451
1    16863328    rs61769543    T    G    140.02    QDFilter2    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=2.624;DB;DP=124;Dels=0.0;FS=7.693;HRun=1;HaplotypeScore=5.9188;MQ=47.7;MQ0=5;MQRankSum=-4.957;QD=1.13;ReadPosRankSum=-1.508;SNPEFF_AMINO_ACID_CHANGE=V125G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_16863295_16864669;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:98,26:124:99:170,0,2659
1    16863352    rs61769544    C    T    341.47    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=2.51;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8606;MQ=47.31;MQ0=4;MQRankSum=-5.024;QD=2.94;ReadPosRankSum=-1.528;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:90,26:116:99:371,0,2303
1    16863398    rs61769545    A    C    42.61    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.199;DB;DP=78;Dels=0.0;FS=4.772;HRun=1;HaplotypeScore=2.3683;MQ=48.56;MQ0=3;MQRankSum=-4.671;QD=0.55;ReadPosRankSum=0.873;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355149.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357301    GT:AD:DP:GQ:PL    0/1:66,12:78:72.61:73,0,1867
1    16890130    rs1043523    A    C    192.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.31;MQ0=1;QD=19.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    1/1:0,10:10:21.05:225,21,0
1    16890176    rs3868814    A    C    352.25    MQFilter40    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=0.996;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.92;MQ0=3;MQRankSum=-2.325;QD=16.01;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    0/1:2,20:22:34.46:382,0,34
1    16890189    .    A    G    52.82    MQFilter40;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=0.491;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.96;MQ0=3;MQRankSum=0.606;QD=1.65;ReadPosRankSum=-0.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    0/1:27,5:32:82.81:83,0,627
1    16890283    rs156893    G    T    4466.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.965;MQ=38.79;MQ0=5;QD=29.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    1/1:0,149:149:99:4466,373,0
1    16890383    rs3981536    C    T    259.65    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=0.805;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3963;MQ=51.55;MQ0=8;MQRankSum=-1.127;QD=1.04;ReadPosRankSum=1.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    0/1:211,39:250:99:290,0,6454
1    16890421    rs2990549    G    A    3894.89    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=7.442;DB;DP=250;DS;Dels=0.0;FS=5.816;HRun=0;HaplotypeScore=0.0;MQ=53.34;MQ0=5;MQRankSum=2.871;QD=15.58;ReadPosRankSum=0.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    0/1:128,122:250:99:3895,0,3307
1    16890441    rs3863779    C    T    197.47    QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.435;DB;DP=250;DS;Dels=0.0;FS=2.778;HRun=1;HaplotypeScore=2.9153;MQ=53.1;MQ0=8;MQRankSum=-5.979;QD=0.79;ReadPosRankSum=-1.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    0/1:208,42:250:99:227,0,7334
1    16890456    .    T    G    197.45    QDFilter2    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.129;DP=249;DS;Dels=0.0;FS=4.077;HRun=0;HaplotypeScore=3.8248;MQ=53.0;MQ0=7;MQRankSum=0.02;QD=0.79;ReadPosRankSum=0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    0/1:223,26:249:99:227,0,7413
1    16890484    rs12117084    G    C    113.73    QDFilter2    AB=0.903;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=247;DS;Dels=0.0;FS=0.844;HRun=0;HaplotypeScore=8.0568;MQ=54.21;MQ0=4;MQRankSum=-2.892;QD=0.46;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420031    GT:AD:DP:GQ:PL    0/1:223,24:247:99:144,0,7557
1    16890598    rs2990550    T    A    5555.28    HaplotypeScoreFilter13    AB=0.132;AC=1;AF=0.50;AN=2;BaseQRankSum=4.09;DB;DP=250;DS;Dels=0.0;FS=9.67;HRun=1;HaplotypeScore=45.9965;MQ=40.15;MQ0=12;MQRankSum=-4.954;QD=22.22;ReadPosRankSum=1.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:33,217:250:99:5555,0,486
1    16890602    rs2990551    T    G    1341    HaplotypeScoreFilter13    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.985;DB;DP=250;DS;Dels=0.0;FS=0.565;HRun=0;HaplotypeScore=41.0231;MQ=41.64;MQ0=12;MQRankSum=0.994;QD=5.36;ReadPosRankSum=-1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:176,74:250:99:1371,0,4802
1    16890639    rs1043750    C    T    713.06    HaplotypeScoreFilter13    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.16;DB;DP=250;DS;Dels=0.0;FS=10.311;HRun=0;HaplotypeScore=70.2746;MQ=44.04;MQ0=10;MQRankSum=-5.672;QD=2.85;ReadPosRankSum=1.704;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:198,52:250:99:743,0,6067
1    16890644    rs2992339    C    T    4075.21    HaplotypeScoreFilter13    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=4.129;DB;DP=250;DS;Dels=0.0;FS=1.918;HRun=2;HaplotypeScore=62.222;MQ=43.91;MQ0=9;MQRankSum=2.515;QD=16.3;ReadPosRankSum=-0.284;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:95,154:250:99:4075,0,2303
1    16890671    rs2419526    T    C    3927.32    PASS    AB=0.124;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=250;DS;Dels=0.0;FS=1.745;HRun=0;HaplotypeScore=12.8412;MQ=43.16;MQ0=19;MQRankSum=-4.804;QD=15.71;ReadPosRankSum=0.682;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:31,219:250:99:3927,0,596
1    16890672    rs2419525    G    A    4070.33    PASS    AB=0.129;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.19;DB;DP=248;DS;Dels=0.0;FS=2.706;HRun=0;HaplotypeScore=12.8412;MQ=43.89;MQ0=17;MQRankSum=-4.515;QD=16.41;ReadPosRankSum=1.319;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:32,216:248:99:4070,0,672
1    16890756    .    T    A    51.52    HaplotypeScoreFilter13;QDFilter2    AB=0.894;AC=1;AF=0.50;AN=2;BaseQRankSum=2.212;DP=180;DS;Dels=0.0;FS=1.694;HRun=2;HaplotypeScore=19.1208;MQ=41.89;MQ0=14;MQRankSum=-0.297;QD=0.29;ReadPosRankSum=-1.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:161,19:180:81.52:82,0,4044
1    16890760    rs1759170    G    A    2262.05    HaplotypeScoreFilter13    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=177;DS;Dels=0.0;FS=4.615;HRun=0;HaplotypeScore=18.1544;MQ=42.37;MQ0=14;MQRankSum=-5.726;QD=12.78;ReadPosRankSum=-0.806;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:64,113:177:99:2292,0,1766
1    16890771    rs77194068    G    A    57.44    QDFilter2    AB=0.917;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.558;DB;DP=157;DS;Dels=0.0;FS=7.177;HRun=0;HaplotypeScore=8.386;MQ=42.67;MQ0=9;MQRankSum=-0.105;QD=0.37;ReadPosRankSum=-2.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:143,13:157:87.43:87,0,3455
1    16890787    rs111418886    ATAGATCCAT    A    1956.82    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=5.814;DB;DP=115;DS;FS=0.0;HRun=0;HaplotypeScore=1363.9243;IndelType=D;MQ=40.75;MQ0=9;MQRankSum=-4.689;QD=13.59;ReadPosRankSum=-2.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:99,42:115:99:1996,0,4027
1    16890814    rs56139324    TA    T    163.57    QDFilter2    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=3.256;DB;DP=73;FS=2.484;HRun=12;HaplotypeScore=673.2482;IndelType=D;MQ=35.82;MQ0=11;MQRankSum=-4.85;QD=1.47;ReadPosRankSum=1.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:60,35:73:99:203,0,978
1    16890852    rs1932256    A    C    363.38    MQFilter40    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=112;Dels=0.0;FS=14.519;HRun=0;HaplotypeScore=0.9867;MQ=34.82;MQ0=8;MQRankSum=-2.956;QD=3.24;ReadPosRankSum=-0.901;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:74,38:112:99:393,0,1451
1    16890921    rs1759171    G    A    586.66    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.837;DB;DP=98;Dels=0.0;FS=7.797;HRun=3;HaplotypeScore=12.5248;MQ=35.4;MQ0=6;MQRankSum=2.983;QD=5.99;ReadPosRankSum=-2.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:70,28:98:99:617,0,1380
1    16891003    rs653454    C    A    342.63    MQFilter40    AB=0.12;AC=1;AF=0.50;AN=2;BaseQRankSum=1.605;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=22.9;MQ0=8;MQRankSum=-3.744;QD=6.72;ReadPosRankSum=0.645;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:6,44:51:99:373,0,144
1    16891074    rs4111896    T    C    1284.04    MQFilter40    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=1.783;DB;DP=250;DS;Dels=0.0;FS=6.588;HRun=0;HaplotypeScore=8.4651;MQ=25.63;MQ0=7;MQRankSum=1.43;QD=5.14;ReadPosRankSum=0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:114,136:250:99:1314,0,1004
1    16891120    .    AATG    A    99.84    QDFilter2    AB=0.958;AC=1;AF=0.50;AN=2;BaseQRankSum=3.304;DP=87;DS;FS=0.0;HRun=0;HaplotypeScore=590.5867;IndelType=D;MQ=25.51;MQ0=7;MQRankSum=0.293;QD=0.4;ReadPosRankSum=0.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:239,11:87:99:139,0,4959
1    16891152    rs659276    A    G    33.58    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.919;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.498;DB;DP=248;DS;Dels=0.0;FS=5.563;HRun=0;HaplotypeScore=40.0829;MQ=27.21;MQ0=4;MQRankSum=1.794;QD=0.14;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:228,20:248:63.57:64,0,3520
1    16891158    rs4112523    A    C    557.82    HaplotypeScoreFilter13;MQFilter40    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=6.811;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=28.9062;MQ=27.81;MQ0=10;MQRankSum=-2.308;QD=2.23;ReadPosRankSum=1.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:176,73:250:99:588,0,3208
1    16891233    rs4120702    T    C    542.46    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.315;DB;DP=250;DS;Dels=0.0;FS=13.358;HRun=1;HaplotypeScore=37.6692;MQ=30.54;MQ0=33;MQRankSum=0.927;QD=2.17;ReadPosRankSum=3.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:202,48:250:99:572,0,4816
1    16891234    .    G    A    513.08    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.081;DP=250;DS;Dels=0.0;FS=13.342;HRun=0;HaplotypeScore=38.6217;MQ=30.41;MQ0=32;MQRankSum=1.526;QD=2.05;ReadPosRankSum=2.084;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:198,51:250:99:543,0,4817
1    16891243    rs61771012    C    G    4699.97    FSFilter60;HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.116;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=250;DS;Dels=0.0;FS=72.857;HRun=0;HaplotypeScore=64.9191;MQ=29.68;MQ0=33;MQRankSum=-5.551;QD=18.8;ReadPosRankSum=0.192;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:29,220:250:99:4700,0,436
1    16891485    rs2289551    C    T    2714.12    MQFilter40    AB=0.277;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.812;DB;DP=250;DS;Dels=0.0;FS=44.736;HRun=0;HaplotypeScore=6.9184;MQ=29.59;MQ0=34;MQRankSum=-10.092;QD=10.86;ReadPosRankSum=0.781;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:69,180:250:99:2744,0,1993
1    16891585    rs190400518    T    G    343.25    MQFilter40;QDFilter2    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=0.541;DB;DP=250;DS;Dels=0.0;FS=36.958;HRun=2;HaplotypeScore=4.843;MQ=23.34;MQ0=32;MQRankSum=1.246;QD=1.37;ReadPosRankSum=3.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:197,53:250:99:373,0,2237
1    16891705    rs3900885    T    C    261.91    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=250;DS;Dels=0.0;FS=1.96;HRun=0;HaplotypeScore=14.3304;MQ=27.77;MQ0=77;MQRankSum=1.834;QD=1.05;ReadPosRankSum=0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:224,26:250:99:292,0,3612
1    16891734    rs3868817    T    C    142.21    MQFilter40;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.511;DB;DP=250;DS;Dels=0.0;FS=4.596;HRun=1;HaplotypeScore=4.8151;MQ=20.37;MQ0=90;MQRankSum=-0.176;QD=0.57;ReadPosRankSum=0.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:220,30:250:99:172,0,2541
1    16891826    rs3872311    A    C    135.61    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=181;DS;Dels=0.0;FS=5.037;HRun=1;HaplotypeScore=14.8615;MQ=14.86;MQ0=94;MQRankSum=-0.945;QD=0.75;ReadPosRankSum=0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:150,31:181:99:166,0,1021
1    16891963    rs56078233    T    A    194.01    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=0.418;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.6813;MQ=29.4;MQ0=8;MQRankSum=0.745;QD=0.78;ReadPosRankSum=0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:211,39:250:99:224,0,3914
1    16892249    .    T    G    198.99    MQFilter40;QDFilter2    AB=0.932;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.569;DP=249;DS;Dels=0.0;FS=33.055;HRun=1;HaplotypeScore=2.3609;MQ=16.54;MQ0=120;MQRankSum=1.18;QD=0.8;ReadPosRankSum=-2.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:232,17:249:99:229,0,1615
1    16892272    .    C    CT    1564.36    PASS    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=7.16;DP=81;DS;FS=136.363;HRun=1;HaplotypeScore=917.3268;IndelType=I;MQ=17.22;MQ0=121;MQRankSum=-6.815;QD=6.46;ReadPosRankSum=1.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:191,51:81:99:1603,0,1125
1    16892276    .    TG    T    1507.76    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=6.513;DP=80;DS;FS=132.827;HRun=1;HaplotypeScore=916.4374;IndelType=D;MQ=17.25;MQ0=121;MQRankSum=-6.069;QD=6.34;ReadPosRankSum=2.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:187,51:80:99:1547,0,1335
1    16892310    .    T    G    199.57    FSFilter60;MQFilter40;QDFilter2    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=6.309;DP=250;DS;Dels=0.0;FS=61.327;HRun=1;HaplotypeScore=2.8178;MQ=23.3;MQ0=117;MQRankSum=-4.669;QD=0.8;ReadPosRankSum=2.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:102,147:250:99:230,0,2625
1    16892407    rs138256522    A    G    278.93    QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=2.958;DB;DP=243;DS;Dels=0.0;FS=3.908;HRun=2;HaplotypeScore=1.9545;MQ=40.19;MQ0=1;MQRankSum=-1.452;QD=1.15;ReadPosRankSum=0.404;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:208,35:243:99:309,0,6502
1    16892419    .    A    G    3468.41    PASS    AB=0.502;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DP=250;DS;Dels=0.0;FS=1.056;HRun=0;HaplotypeScore=3.5937;MQ=40.29;MQ0=1;MQRankSum=1.755;QD=13.87;ReadPosRankSum=-0.845;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:125,124:250:99:3468,0,3203
1    16892561    rs149619125    C    T    4760.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=180;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7319;MQ=36.66;MQ0=9;QD=26.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    1/1:0,180:180:99:4761,382,0
1    16892578    rs138804673    ACT    A    73.77    QDFilter2    AB=0.917;AC=1;AF=0.50;AN=2;BaseQRankSum=2.584;DB;DP=133;DS;FS=4.47;HRun=0;HaplotypeScore=953.5468;IndelType=D;MQ=36.46;MQ0=9;MQRankSum=-1.687;QD=0.45;ReadPosRankSum=0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:150,15:133:99:113,0,5855
1    16892811    rs145957327    A    G    442.81    MQFilter40;QDFilter2    AB=0.668;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.043;DB;DP=250;DS;Dels=0.0;FS=4.704;HRun=0;HaplotypeScore=10.8586;MQ=22.43;MQ0=1;MQRankSum=-0.953;QD=1.77;ReadPosRankSum=-0.547;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:167,83:250:99:473,0,1703
1    16892828    .    T    C    149.91    MQFilter40;QDFilter2    AB=0.944;AC=1;AF=0.50;AN=2;BaseQRankSum=0.891;DP=250;DS;Dels=0.0;FS=24.907;HRun=0;HaplotypeScore=5.7739;MQ=24.32;MQ0=1;MQRankSum=2.504;QD=0.6;ReadPosRankSum=1.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:236,14:250:99:180,0,2474
1    16893033    rs3983170    G    A    751.38    FSFilter60;MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.864;DB;DP=250;DS;Dels=0.0;FS=78.861;HRun=0;HaplotypeScore=6.6699;MQ=31.07;MQ0=2;MQRankSum=-8.081;QD=3.01;ReadPosRankSum=-3.743;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:134,115:250:99:781,0,3564
1    16893071    rs3868031    T    G    167.69    MQFilter40;QDFilter2    AB=0.9;AC=1;AF=0.50;AN=2;BaseQRankSum=1.071;DB;DP=250;DS;Dels=0.0;FS=8.611;HRun=1;HaplotypeScore=4.3039;MQ=39.08;MQ0=2;MQRankSum=-0.081;QD=0.67;ReadPosRankSum=0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:225,25:250:99:198,0,6914
1    16893144    rs181201720    T    G    1154.89    MQFilter40    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=4.154;DB;DP=233;DS;Dels=0.0;FS=10.633;HRun=3;HaplotypeScore=1.9025;MQ=35.67;MQ0=3;MQRankSum=1.881;QD=4.96;ReadPosRankSum=1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:167,66:233:99:1185,0,4400
1    16893182    rs1855757    G    T    397.16    MQFilter40;QDFilter2    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.209;DB;DP=225;DS;Dels=0.0;FS=44.298;HRun=0;HaplotypeScore=6.6455;MQ=33.56;MQ0=7;MQRankSum=-2.754;QD=1.77;ReadPosRankSum=-2.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:177,48:225:99:427,0,4272
1    16893222    rs185856724    T    A    975.27    MQFilter40    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.137;DB;DP=249;DS;Dels=0.0;FS=25.612;HRun=0;HaplotypeScore=12.0837;MQ=37.97;MQ0=6;MQRankSum=-1.376;QD=3.9;ReadPosRankSum=-0.136;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:188,60:249:99:1005,0,4502
1    16893441    rs607117    G    A    1971.67    MQFilter40    AB=0.198;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=131;Dels=0.0;FS=5.489;HRun=0;HaplotypeScore=5.2559;MQ=36.4;MQ0=14;MQRankSum=-6.056;QD=15.05;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:26,105:131:99:2002,0,631
1    16893739    .    T    G    643.30    FSFilter60;HaplotypeScoreFilter13;MQFilter40    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.304;DP=250;DS;Dels=0.0;FS=128.14;HRun=2;HaplotypeScore=20.2141;MQ=37.66;MQ0=3;MQRankSum=-4.912;QD=2.57;ReadPosRankSum=-3.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:173,77:250:99:673,0,4728
1    16893854    .    A    C    712.02    HaplotypeScoreFilter13;MQFilter40    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-9.307;DP=250;DS;Dels=0.0;FS=1.979;HRun=1;HaplotypeScore=24.2709;MQ=34.52;MQ0=7;MQRankSum=0.52;QD=2.85;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:194,56:250:99:742,0,4775
1    16893884    rs61771021    G    A    852.50    MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.066;DB;DP=250;DS;Dels=0.0;FS=2.766;HRun=2;HaplotypeScore=2.4095;MQ=21.93;MQ0=37;MQRankSum=-3.211;QD=3.41;ReadPosRankSum=-1.594;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:137,113:250:99:882,0,1934
1    16893984    .    C    T    178.73    MQFilter40;QDFilter2    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DP=127;DS;Dels=0.0;FS=4.877;HRun=0;HaplotypeScore=8.2038;MQ=19.27;MQ0=19;MQRankSum=-0.199;QD=1.41;ReadPosRankSum=-1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:100,27:127:99:209,0,1246
1    16893991    rs688049    A    G    1479.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=102;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.9137;MQ=19.63;MQ0=17;QD=14.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    1/1:0,101:102:99:1512,147,0
1    16894277    rs4661809    G    T    181.38    MQFilter40    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.246;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=25.03;MQ0=1;MQRankSum=-0.143;QD=3.18;ReadPosRankSum=0.763;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:35,22:57:99:211,0,473
1    16894295    rs678186    T    G    75.29    MQFilter40;QDFilter2    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=4.153;DB;DP=75;Dels=0.0;FS=6.264;HRun=3;HaplotypeScore=4.6667;MQ=23.42;MQ0=2;MQRankSum=-1.44;QD=1.0;ReadPosRankSum=1.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:57,18:75:99:105,0,805
1    16894323    rs55870077    C    A    1004.05    MQFilter40    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=3.611;DB;DP=141;Dels=0.0;FS=6.56;HRun=1;HaplotypeScore=3.6477;MQ=20.92;MQ0=2;MQRankSum=0.556;QD=7.12;ReadPosRankSum=0.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:65,76:141:99:1034,0,869
1    16894376    rs849613    A    G    170.60    MQFilter40;QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.778;DB;DP=250;DS;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=1.4105;MQ=18.38;MQ0=31;MQRankSum=1.813;QD=0.68;ReadPosRankSum=0.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:216,34:250:99:201,0,2652
1    16894664    rs860282    C    T    96.78    MQFilter40;QDFilter2    AB=0.255;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.486;DB;DP=98;DS;Dels=0.0;FS=16.085;HRun=0;HaplotypeScore=0.0;MQ=23.02;MQ0=24;MQRankSum=-6.457;QD=0.99;ReadPosRankSum=0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:25,73:98:99:127,0,849
1    16895634    rs75027498    T    G    1142.57    MQFilter40    AB=0.302;AC=1;AF=0.50;AN=2;BaseQRankSum=1.329;DB;DP=250;DS;Dels=0.0;FS=23.864;HRun=1;HaplotypeScore=2.89;MQ=21.95;MQ0=67;MQRankSum=-7.46;QD=4.57;ReadPosRankSum=0.809;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:75,173:250:99:1173,0,1158
1    16899903    rs61772300    G    C    32.85    MQFilter40;QDFilter2    AB=0.885;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.59;MQ0=21;MQRankSum=0.358;QD=1.26;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:23,3:26:62.84:63,0,98
1    16901247    rs10752419    G    T    320.19    MQFilter40;QDFilter2    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.76;DB;DP=179;DS;Dels=0.0;FS=5.378;HRun=0;HaplotypeScore=0.6651;MQ=19.45;MQ0=40;MQRankSum=-1.818;QD=1.79;ReadPosRankSum=0.482;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:110,69:179:99:350,0,1210
1    16901259    rs10907243    T    A    100.67    MQFilter40;QDFilter2    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=143;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=18.91;MQ0=40;MQRankSum=-1.854;QD=0.7;ReadPosRankSum=-0.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:111,32:143:99:131,0,1126
1    16901407    rs10796416    G    C    70.19    MQFilter40    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.966;DB;DP=30;Dels=0.0;FS=6.113;HRun=0;HaplotypeScore=1.9576;MQ=31.77;MQ0=4;MQRankSum=-3.894;QD=2.34;ReadPosRankSum=0.908;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:10,18:30:99:100,0,351
1    16901549    rs10907244    A    G    49.05    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.775;DB;DP=190;Dels=0.0;FS=5.698;HRun=0;HaplotypeScore=28.6169;MQ=39.02;MQ0=14;MQRankSum=-8.317;QD=0.26;ReadPosRankSum=1.362;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:129,61:190:79.04:79,0,4589
1    16901627    rs3872316    C    A    90.60    MQFilter40;QDFilter2    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=4.502;DB;DP=250;DS;Dels=0.0;FS=2.111;HRun=1;HaplotypeScore=0.0;MQ=36.02;MQ0=15;MQRankSum=-8.503;QD=0.36;ReadPosRankSum=5.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:176,74:250:99:121,0,5196
1    16901668    rs3901679    T    C    338.15    MQFilter40;QDFilter2    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=3.236;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2002;MQ=29.6;MQ0=56;MQRankSum=3.276;QD=1.35;ReadPosRankSum=3.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:223,26:250:99:368,0,3537
1    16901710    rs3901680    C    G    211.49    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=4.154;DB;DP=236;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=24.9034;MQ=21.53;MQ0=84;MQRankSum=-2.09;QD=0.9;ReadPosRankSum=1.376;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:178,58:236:99:241,0,2412
1    16901714    rs138796798    G    A    855.96    HaplotypeScoreFilter13;MQFilter40    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.17;DB;DP=236;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=31.1006;MQ=19.65;MQ0=91;MQRankSum=0.012;QD=3.61;ReadPosRankSum=0.784;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:139,97:236:99:886,0,1562
1    16901757    rs3872317    C    A    147.93    MQFilter40;QDFilter2    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.804;DB;DP=236;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.18;MQ0=109;MQRankSum=-2.233;QD=0.63;ReadPosRankSum=-2.136;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:173,63:236:99:178,0,1570
1    16902568    rs12405359    A    C    31.56    MQFilter40;QDFilter2    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=33.08;MQ0=2;MQRankSum=-2.927;QD=1.97;ReadPosRankSum=0.437;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:10,6:16:61.55:62,0,283
1    16902661    rs2985115    C    A    33.31    MQFilter40;QDFilter2    AB=0.151;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.153;DB;DP=106;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=2.2019;MQ=21.22;MQ0=27;MQRankSum=-6.13;QD=0.31;ReadPosRankSum=-0.043;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:16,90:106:63.30:63,0,544
1    16902715    .    C    T    142.16    MQFilter40;QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.547;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.2449;MQ=20.72;MQ0=39;MQRankSum=0.657;QD=0.57;ReadPosRankSum=-0.277;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:219,31:250:99:172,0,2074
1    16902823    rs80271292    G    C    143.46    MQFilter40;QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=250;DS;Dels=0.0;FS=7.855;HRun=0;HaplotypeScore=2.4982;MQ=20.37;MQ0=53;MQRankSum=1.328;QD=0.57;ReadPosRankSum=2.083;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:214,36:250:99:173,0,2336
1    16902894    rs61772339    A    G    286.38    MQFilter40;QDFilter2    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.137;DB;DP=221;DS;Dels=0.0;FS=20.353;HRun=2;HaplotypeScore=9.9655;MQ=20.46;MQ0=83;MQRankSum=-7.575;QD=1.3;ReadPosRankSum=2.797;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287968    GT:AD:DP:GQ:PL    0/1:37,184:221:99:316,0,1062
1    16903072    .    A    T    42.53    MQFilter40;QDFilter2    AB=0.92;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.375;DP=139;DS;Dels=0.0;FS=4.105;HRun=0;HaplotypeScore=0.9332;MQ=28.75;MQ0=13;MQRankSum=2.341;QD=0.31;ReadPosRankSum=2.303;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:127,11:139:72.52:73,0,2167
1    16903150    rs61772340    T    C    789.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.1;MQ0=2;QD=20.23;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    1/1:0,39:39:89.76:822,90,0
1    16903663    rs684193    C    T    206.29    MQFilter40    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.851;DB;DP=77;Dels=0.0;FS=9.029;HRun=2;HaplotypeScore=0.0;MQ=32.92;MQ0=11;MQRankSum=-3.808;QD=2.68;ReadPosRankSum=0.598;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:52,25:77:99:236,0,1392
1    16903674    rs613213    C    T    64.19    MQFilter40;QDFilter2    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.056;DB;DP=97;Dels=0.0;FS=27.011;HRun=2;HaplotypeScore=0.0;MQ=32.93;MQ0=10;MQRankSum=-4.649;QD=0.66;ReadPosRankSum=-1.752;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:73,24:97:94.18:94,0,1996
1    16903683    rs684166    T    A    490.62    MQFilter40    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DB;DP=119;Dels=0.0;FS=10.978;HRun=0;HaplotypeScore=0.9832;MQ=34.73;MQ0=10;MQRankSum=-3.184;QD=4.12;ReadPosRankSum=-3.801;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:78,40:119:99:521,0,2209
1    16903741    .    C    T    123.92    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.9;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.087;DP=249;DS;Dels=0.0;FS=3.101;HRun=1;HaplotypeScore=30.1816;MQ=36.43;MQ0=4;MQRankSum=1.023;QD=0.5;ReadPosRankSum=0.852;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:224,25:249:99:154,0,6722
1    16903794    .    C    A    33.25    MQFilter40;QDFilter2    AB=0.932;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.938;DP=250;DS;Dels=0.0;FS=1.136;HRun=0;HaplotypeScore=10.2432;MQ=26.58;MQ0=78;MQRankSum=1.432;QD=0.13;ReadPosRankSum=0.131;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:233,17:250:63.24:63,0,3869
1    16903912    rs61772344    T    A    1837.65    MQFilter40    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.539;DB;DP=195;DS;Dels=0.0;FS=7.663;HRun=0;HaplotypeScore=2.6023;MQ=25.61;MQ0=43;MQRankSum=-1.484;QD=9.42;ReadPosRankSum=-1.446;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:62,131:195:99:1868,0,1326
1    16903978    .    A    G    143.21    MQFilter40;QDFilter2    AB=0.919;AC=1;AF=0.50;AN=2;BaseQRankSum=3.44;DP=222;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=19.09;MQ0=104;MQRankSum=1.689;QD=0.65;ReadPosRankSum=0.184;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:203,18:222:99:173,0,2118
1    16904073    .    C    A    457.57    MQFilter40    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DP=91;Dels=0.0;FS=1.864;HRun=1;HaplotypeScore=9.7024;MQ=29.99;MQ0=25;MQRankSum=1.411;QD=5.03;ReadPosRankSum=-1.112;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:70,21:91:99:488,0,1252
1    16904076    .    T    C    110.20    MQFilter40;QDFilter2    AB=0.888;AC=1;AF=0.50;AN=2;BaseQRankSum=2.771;DP=90;Dels=0.0;FS=2.409;HRun=1;HaplotypeScore=9.7024;MQ=30.15;MQ0=24;MQRankSum=1.979;QD=1.22;ReadPosRankSum=1.939;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:79,10:90:99:140,0,1587
1    16904121    rs145966688    T    G    1720.08    MQFilter40    AB=0.121;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.68;MQ0=0;MQRankSum=-2.565;QD=29.66;ReadPosRankSum=0.012;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:7,51:58:99:1750,0,103
1    16904160    rs139419642    C    G    246.32    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=3.031;DB;DP=28;Dels=0.0;FS=2.732;HRun=1;HaplotypeScore=0.0;MQ=35.39;MQ0=2;MQRankSum=1.555;QD=8.8;ReadPosRankSum=-0.606;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:18,10:28:99:276,0,438
1    16905978    rs2021196    C    T    678.84    HaplotypeScoreFilter13;MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=7.244;DB;DP=84;Dels=0.0;FS=2.846;HRun=0;HaplotypeScore=13.9129;MQ=31.88;MQ0=3;MQRankSum=-4.086;QD=8.08;ReadPosRankSum=3.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:50,34:84:99:709,0,1319
1    16905983    .    G    A    326.56    HaplotypeScoreFilter13;MQFilter40    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.795;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=13.9129;MQ=32.02;MQ0=3;MQRankSum=-1.011;QD=4.19;ReadPosRankSum=1.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:59,19:78:99:357,0,1729
1    16906990    rs148747505    G    A    71.32    MQFilter40    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.93;MQ0=14;MQRankSum=-0.067;QD=3.1;ReadPosRankSum=0.762;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:7,16:23:37.31:101,0,37
1    16907110    rs77700260    T    C    2906.26    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=2.776;DB;DP=187;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=42.08;MQ0=24;MQRankSum=0.167;QD=15.54;ReadPosRankSum=-0.029;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:73,114:187:99:2936,0,1928
1    16907124    rs615115    A    C    5319    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=3.221;DB;DP=245;Dels=0.0;FS=5.199;HRun=0;HaplotypeScore=1.9931;MQ=45.35;MQ0=20;MQRankSum=-0.898;QD=21.71;ReadPosRankSum=-0.539;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:70,175:245:99:5319,0,1700
1    16907328    rs78540200    G    T    2803.63    MQFilter40    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=1.846;DB;DP=250;DS;Dels=0.0;FS=14.366;HRun=0;HaplotypeScore=4.7229;MQ=27.58;MQ0=46;MQRankSum=-2.455;QD=11.21;ReadPosRankSum=4.804;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:73,177:250:99:2834,0,1699
1    16907547    rs142893461    C    G    259.91    MQFilter40;QDFilter2    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=168;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=12.95;MQ0=86;MQRankSum=-2.016;QD=1.55;ReadPosRankSum=0.605;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:68,99:168:99:290,0,420
1    16907766    rs115167116    A    G    785.89    MQFilter40    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.945;DB;DP=94;Dels=0.0;FS=2.941;HRun=0;HaplotypeScore=0.9469;MQ=22.65;MQ0=30;MQRankSum=-0.523;QD=8.36;ReadPosRankSum=2.257;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:25,68:94:99:816,0,579
1    16907854    rs9729861    T    A    3463.03    HaplotypeScoreFilter13;MQFilter40    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=2.892;DB;DP=250;DS;Dels=0.0;FS=5.847;HRun=0;HaplotypeScore=28.7451;MQ=37.27;MQ0=29;MQRankSum=3.522;QD=13.85;ReadPosRankSum=1.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:108,142:250:99:3463,0,2048
1    16907871    rs9728933    C    T    3286.55    HaplotypeScoreFilter13;MQFilter40    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.112;DB;DP=250;DS;Dels=0.0;FS=4.458;HRun=4;HaplotypeScore=15.365;MQ=37.89;MQ0=21;MQRankSum=2.541;QD=13.15;ReadPosRankSum=0.904;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:110,140:250:99:3287,0,2076
1    16907885    .    C    G    337.50    MQFilter40;QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.556;DP=250;DS;Dels=0.0;FS=3.146;HRun=0;HaplotypeScore=5.2809;MQ=31.28;MQ0=59;MQRankSum=0.714;QD=1.35;ReadPosRankSum=-0.334;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:207,43:250:99:367,0,4289
1    16908115    rs647061    A    G    2130.15    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=169;DS;Dels=0.0;FS=3.607;HRun=0;HaplotypeScore=1.9148;MQ=45.38;MQ0=13;MQRankSum=3.257;QD=12.6;ReadPosRankSum=0.002;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:95,74:169:99:2160,0,2492
1    16908867    rs643850    C    A    261.25    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.664;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9993;MQ=24.91;MQ0=17;MQRankSum=-2.53;QD=5.44;ReadPosRankSum=0.664;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:28,20:48:99:291,0,470
1    16908914    rs643471    G    A    705.98    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=126;Dels=0.0;FS=7.424;HRun=0;HaplotypeScore=1.81;MQ=31.85;MQ0=18;MQRankSum=1.234;QD=5.6;ReadPosRankSum=-0.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:84,42:126:99:736,0,2522
1    16908989    rs144184209    C    T    71.60    MQFilter40;QDFilter2    AB=0.936;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.845;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=23.53;MQ0=120;MQRankSum=0.948;QD=0.29;ReadPosRankSum=0.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:234,16:250:99:102,0,3303
1    16909000    rs151092163    C    A    34.19    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.928;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.263;DB;DP=250;DS;Dels=0.0;FS=6.129;HRun=0;HaplotypeScore=21.9265;MQ=21.74;MQ0=135;MQRankSum=-0.012;QD=0.14;ReadPosRankSum=1.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:232,18:250:64.18:64,0,2846
1    16909002    .    TG    T    264.42    QDFilter2    AB=0.926;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DP=95;DS;FS=2.929;HRun=4;HaplotypeScore=460.9781;IndelType=D;MQ=20.89;MQ0=143;MQRankSum=-2.105;QD=1.06;ReadPosRankSum=1.261;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:230,20:95:99:303,0,2771
1    16909052    rs140548913    C    T    1359.10    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7219;MQ=12.49;MQ0=203;QD=5.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    1/1:38,212:250:99:1392,123,0
1    16909057    .    A    C    239.35    MQFilter40;QDFilter2;SnpCluster    AB=0.952;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.271;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=12.13;MQ0=205;MQRankSum=-0.372;QD=0.96;ReadPosRankSum=1.604;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:238,12:250:99:269,0,850
1    16909061    .    T    G    234.50    MQFilter40;QDFilter2;SnpCluster    AB=0.952;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.388;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=12.27;MQ0=204;MQRankSum=-0.338;QD=0.94;ReadPosRankSum=2.064;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:237,12:250:99:264,0,857
1    16909100    rs143269469    G    C    224.02    MQFilter40;QDFilter2    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.394;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.86;MQ0=212;MQRankSum=-1.362;QD=0.9;ReadPosRankSum=1.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:175,74:250:99:254,0,637
1    16909129    .    T    C    372.30    MQFilter40;QDFilter2    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.833;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8285;MQ=8.28;MQ0=228;MQRankSum=0.564;QD=1.49;ReadPosRankSum=-0.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:131,118:250:99:402,0,126
1    16909220    .    T    C    88.44    MQFilter40;QDFilter2    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.793;DP=247;DS;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=0.0;MQ=6.28;MQ0=231;MQRankSum=1.359;QD=0.36;ReadPosRankSum=0.566;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:181,66:247:99:118,0,132
1    16909376    .    GT    G    179.49    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=2.731;DP=31;FS=0.0;HRun=2;HaplotypeScore=79.8461;IndelType=D;MQ=14.37;MQ0=47;MQRankSum=1.557;QD=2.3;ReadPosRankSum=0.429;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:64,14:31:99:219,0,942
1    16909867    .    T    G    40.77    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.18;MQ0=19;MQRankSum=0.736;QD=1.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    1/1:16,6:22:6.02:72,6,0
1    16910249    rs112206996    T    C    158.79    MQFilter40;QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.938;DB;DP=250;DS;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.9933;MQ=8.67;MQ0=208;MQRankSum=0.281;QD=0.64;ReadPosRankSum=-0.976;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:212,38:250:99:189,0,289
1    16911839    .    T    G    53.12    MQFilter40;QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=0.404;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3683;MQ=20.47;MQ0=23;MQRankSum=-1.127;QD=0.8;ReadPosRankSum=0.181;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:54,12:66:83.11:83,0,513
1    16911943    .    T    A    122.55    MQFilter40;QDFilter2    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=5.29;MQ0=238;MQRankSum=1.813;QD=0.49;ReadPosRankSum=-1.517;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:191,59:250:8.64:152,0,9
1    16911946    .    G    A    93.86    MQFilter40;QDFilter2    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=4.87;MQ0=238;MQRankSum=1.191;QD=0.38;ReadPosRankSum=-1.718;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:194,56:250:11.65:124,0,12
1    16912014    rs143097321    A    C    128.92    MQFilter40;QDFilter2    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.043;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.78;MQ0=223;MQRankSum=-1.723;QD=0.52;ReadPosRankSum=-0.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:153,97:250:99:159,0,251
1    16912164    .    C    T    50.91    MQFilter40;QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.379;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.28;MQ0=192;MQRankSum=2.067;QD=0.2;ReadPosRankSum=-0.013;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:215,34:249:80.91:81,0,897
1    16912330    rs4336845    C    T    1646.66    MQFilter40    AB=0.352;AC=1;AF=0.50;AN=2;BaseQRankSum=3.347;DB;DP=105;Dels=0.0;FS=4.613;HRun=1;HaplotypeScore=0.9734;MQ=31.25;MQ0=17;MQRankSum=-1.056;QD=15.68;ReadPosRankSum=0.107;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:37,68:105:99:1677,0,842
1    16913579    rs183653891    A    G    1361.50    HaplotypeScoreFilter13;MQFilter40    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.184;DB;DP=244;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=30.7388;MQ=32.22;MQ0=13;MQRankSum=-0.972;QD=5.58;ReadPosRankSum=-0.509;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:158,86:244:99:1391,0,3433
1    16913584    rs629538    A    C    288.58    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.593;DB;DP=248;DS;Dels=0.0;FS=0.786;HRun=0;HaplotypeScore=32.738;MQ=34.46;MQ0=14;MQRankSum=-0.555;QD=1.16;ReadPosRankSum=1.667;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:212,36:248:99:319,0,4902
1    16913612    rs629889    G    A    278.92    MQFilter40;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=2.697;DB;DP=250;DS;Dels=0.0;FS=6.981;HRun=1;HaplotypeScore=2.101;MQ=35.45;MQ0=13;MQRankSum=-2.083;QD=1.12;ReadPosRankSum=-0.339;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:211,39:250:99:309,0,5134
1    16913633    rs75826632    G    T    1955.69    MQFilter40    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=250;DS;Dels=0.0;FS=6.621;HRun=0;HaplotypeScore=1.6006;MQ=34.62;MQ0=19;MQRankSum=-3.244;QD=7.82;ReadPosRankSum=-0.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:137,112:250:99:1986,0,3260
1    16913852    .    C    G    99.31    MQFilter40;QDFilter2    AB=0.33;AC=1;AF=0.50;AN=2;BaseQRankSum=2.509;DP=112;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=12.27;MQ0=65;MQRankSum=-1.796;QD=0.89;ReadPosRankSum=1.391;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:37,75:112:99:129,0,170
1    16914139    rs3098812    C    A    565.51    MQFilter40    AB=0.858;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.013;DB;DP=211;Dels=0.0;FS=7.804;HRun=1;HaplotypeScore=5.2799;MQ=34.52;MQ0=37;MQRankSum=5.651;QD=2.68;ReadPosRankSum=1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:181,30:211:99:596,0,3421
1    16914160    rs2023215    G    A    432.36    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=250;DS;Dels=0.0;FS=6.764;HRun=0;HaplotypeScore=32.4878;MQ=35.32;MQ0=53;MQRankSum=-5.564;QD=1.73;ReadPosRankSum=-0.081;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:187,63:250:99:462,0,3676
1    16914168    rs2147033    C    G    613.23    HaplotypeScoreFilter13;MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DB;DP=250;DS;Dels=0.0;FS=6.973;HRun=0;HaplotypeScore=26.7057;MQ=36.0;MQ0=61;MQRankSum=-10.28;QD=2.45;ReadPosRankSum=2.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:136,114:250:99:643,0,3743
1    16914252    rs1020241    C    T    628.75    MQFilter40    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=2.308;DB;DP=246;DS;Dels=0.0;FS=8.666;HRun=1;HaplotypeScore=1.5661;MQ=34.97;MQ0=51;MQRankSum=-1.939;QD=2.55;ReadPosRankSum=-1.115;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:197,48:246:99:659,0,4199
1    16914306    rs1967910    A    G    965.27    MQFilter40    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=248;DS;Dels=0.0;FS=0.724;HRun=0;HaplotypeScore=3.4594;MQ=36.7;MQ0=48;MQRankSum=-2.274;QD=3.89;ReadPosRankSum=2.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:188,60:248:99:995,0,4093
1    16914332    .    A    C    45.26    QDFilter2    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=3.269;DP=186;DS;Dels=0.0;FS=1.678;HRun=1;HaplotypeScore=5.2878;MQ=43.32;MQ0=15;MQRankSum=-2.663;QD=0.24;ReadPosRankSum=0.716;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:159,26:186:75.25:75,0,4614
1    16914396    rs2023276    C    T    235.55    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=2.77;DB;DP=104;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=12.1666;MQ=41.14;MQ0=18;MQRankSum=-4.674;QD=2.26;ReadPosRankSum=0.479;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:73,31:104:99:266,0,2253
1    16914415    rs4233549    A    G    113.17    QDFilter2    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6229;MQ=41.67;MQ0=10;MQRankSum=-5.398;QD=1.74;ReadPosRankSum=0.563;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392963    GT:AD:DP:GQ:PL    0/1:40,25:65:99:143,0,1437
1    16915357    .    C    T    62.10    MQFilter40;QDFilter2    AB=0.225;AC=1;AF=0.50;AN=2;BaseQRankSum=1.985;DP=249;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=9.14;MQ0=228;MQRankSum=-1.207;QD=0.25;ReadPosRankSum=-0.506;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:56,193:249:92.09:92,0,425
1    16916309    .    T    G    662.62    MQFilter40    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=0.995;DP=213;Dels=0.0;FS=7.642;HRun=0;HaplotypeScore=0.8321;MQ=24.57;MQ0=104;MQRankSum=3.194;QD=3.11;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:169,43:213:99:693,0,1646
1    16916358    rs3981774    G    C    118.70    MQFilter40;QDFilter2    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.832;DB;DP=250;DS;Dels=0.0;FS=14.054;HRun=1;HaplotypeScore=3.5434;MQ=27.7;MQ0=107;MQRankSum=-8.082;QD=0.47;ReadPosRankSum=-0.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:141,109:250:99:149,0,3180
1    16916395    .    T    A    452.41    MQFilter40;QDFilter2    AB=0.904;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.52;MQ0=113;MQRankSum=2.771;QD=1.81;ReadPosRankSum=2.852;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:225,24:250:99:482,0,2379
1    16916466    rs112602821    A    G    154.79    FSFilter60;MQFilter40;QDFilter2    AB=0.94;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=250;DS;Dels=0.0;FS=78.099;HRun=0;HaplotypeScore=6.8706;MQ=16.89;MQ0=119;MQRankSum=2.055;QD=0.62;ReadPosRankSum=-0.765;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:235,15:250:99:185,0,1798
1    16916536    .    G    T    257.79    MQFilter40;QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.613;DP=249;DS;Dels=0.0;FS=13.771;HRun=0;HaplotypeScore=10.733;MQ=32.65;MQ0=32;MQRankSum=-1.464;QD=1.03;ReadPosRankSum=-0.345;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:212,36:249:99:288,0,4680
1    16916569    rs1855754    A    G    213.75    MQFilter40;QDFilter2    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=5.189;DB;DP=250;DS;Dels=0.0;FS=31.646;HRun=1;HaplotypeScore=4.8575;MQ=35.3;MQ0=9;MQRankSum=-9.109;QD=0.85;ReadPosRankSum=-1.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:172,78:250:99:244,0,4928
1    16916603    rs11583443    C    A    3338.01    MQFilter40    AB=0.157;AC=1;AF=0.50;AN=2;BaseQRankSum=7.127;DB;DP=197;DS;Dels=0.0;FS=4.289;HRun=0;HaplotypeScore=3.3232;MQ=37.46;MQ0=5;MQRankSum=-5.394;QD=16.94;ReadPosRankSum=1.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:31,166:197:99:3338,0,576
1    16916702    rs4112521    T    C    1048.58    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.461;DB;DP=63;Dels=0.0;FS=3.452;HRun=0;HaplotypeScore=4.7197;MQ=43.53;MQ0=0;MQRankSum=-3.951;QD=16.64;ReadPosRankSum=-0.972;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:29,34:63:99:1079,0,960
1    16916754    rs61773623    G    C    227.93    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.64;MQ0=3;MQRankSum=-3.067;QD=13.41;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:5,12:17:99:258,0,157
1    16918246    .    G    A    203.60    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.626;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=29.0641;MQ=25.22;MQ0=46;MQRankSum=0.827;QD=0.81;ReadPosRankSum=-0.575;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:221,29:250:99:234,0,4592
1    16918255    .    A    C    216.78    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=4.88;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=29.1306;MQ=25.44;MQ0=46;MQRankSum=-1.099;QD=0.87;ReadPosRankSum=-1.577;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:211,39:250:99:247,0,4548
1    16918424    rs9730077    G    C    40.94    QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=1.521;DB;DP=250;DS;Dels=0.0;FS=0.904;HRun=0;HaplotypeScore=4.3185;MQ=49.07;MQ0=8;MQRankSum=-3.768;QD=0.16;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:218,32:250:70.93:71,0,7667
1    16918486    .    C    T    91.59    QDFilter2    AB=0.908;AC=1;AF=0.50;AN=2;BaseQRankSum=3.305;DP=250;DS;Dels=0.0;FS=1.965;HRun=1;HaplotypeScore=0.8667;MQ=43.93;MQ0=12;MQRankSum=-0.919;QD=0.37;ReadPosRankSum=0.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:227,23:250:99:122,0,5987
1    16918502    rs3925698    A    G    4748.96    PASS    AB=0.22;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.954;DB;DP=250;DS;Dels=0.0;FS=2.197;HRun=1;HaplotypeScore=5.0896;MQ=42.55;MQ0=13;MQRankSum=-5.785;QD=19.0;ReadPosRankSum=-0.622;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:55,195:250:99:4749,0,1608
1    16918611    rs4141869    A    C    840.67    MQFilter40    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=165;DS;Dels=0.0;FS=2.704;HRun=0;HaplotypeScore=5.2304;MQ=31.52;MQ0=13;MQRankSum=-1.138;QD=5.09;ReadPosRankSum=-1.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:100,65:165:99:871,0,2333
1    16918717    rs3872321    C    T    253.98    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=5.537;DB;DP=46;Dels=0.0;FS=2.66;HRun=2;HaplotypeScore=1.9472;MQ=40.71;MQ0=1;MQRankSum=-0.503;QD=5.52;ReadPosRankSum=-1.861;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:29,17:46:99:284,0,734
1    16918734    rs3928093    G    C    278.72    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.859;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9472;MQ=42.64;MQ0=0;MQRankSum=0.433;QD=6.97;ReadPosRankSum=-0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420513    GT:AD:DP:GQ:PL    0/1:27,13:40:99:309,0,769
1    16945409    rs13566    T    A    296.39    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.445;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=54.1;MQ0=0;MQRankSum=1.423;QD=5.59;ReadPosRankSum=-0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421700    GT:AD:DP:GQ:PL    0/1:41,12:53:99:326,0,1375
1    16945452    rs11260834    C    T    49.87    QDFilter2    AB=0.904;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=115;Dels=0.0;FS=8.255;HRun=0;HaplotypeScore=12.9277;MQ=52.86;MQ0=0;MQRankSum=-2.142;QD=0.43;ReadPosRankSum=-2.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421700    GT:AD:DP:GQ:PL    0/1:104,11:115:79.86:80,0,3438
1    16945462    rs11576126    A    G    251.83    QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.9282;MQ=52.1;MQ0=0;MQRankSum=2.118;QD=1.94;ReadPosRankSum=2.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421700    GT:AD:DP:GQ:PL    0/1:110,19:130:99:282,0,3538
1    16945504    rs11378    C    T    1226.96    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=221;Dels=0.0;FS=2.976;HRun=0;HaplotypeScore=4.6029;MQ=49.31;MQ0=2;MQRankSum=0.628;QD=5.55;ReadPosRankSum=1.433;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421700    GT:AD:DP:GQ:PL    0/1:169,52:221:99:1257,0,5295
1    16945673    rs55654854    A    G    375.32    MQFilter40;QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=205;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2745;MQ=21.19;MQ0=50;MQRankSum=-0.985;QD=1.83;ReadPosRankSum=1.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421700    GT:AD:DP:GQ:PL    0/1:160,45:205:99:405,0,2202
1    16945738    rs150540867    A    G    823.17    MQFilter40    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.56;DB;DP=111;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=19.74;MQ0=27;MQRankSum=1.414;QD=7.42;ReadPosRankSum=-0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421700    GT:AD:DP:GQ:PL    0/1:46,65:111:99:853,0,368
1    16945780    rs139443204    C    T    103.79    MQFilter40    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=3.586;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=16.66;MQ0=13;MQRankSum=-0.506;QD=2.26;ReadPosRankSum=-0.726;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421700    GT:AD:DP:GQ:PL    0/1:17,25:46:99:134,0,107
1    16948474    rs2781579    C    G    550.33    PASS    AB=0.148;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=27;Dels=0.0;FS=3.598;HRun=0;HaplotypeScore=3.9657;MQ=57.87;MQ0=0;MQRankSum=-1.129;QD=20.38;ReadPosRankSum=-0.125;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:4,23:27:62.15:580,0,62
1    16948722    rs390951    C    T    213.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=13.35;ReadPosRankSum=-0.368;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:8,8:16:99:244,0,271
1    16950404    .    C    T    34.85    QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=0.233;DP=38;Dels=0.0;FS=2.615;HRun=1;HaplotypeScore=0.0;MQ=53.24;MQ0=0;MQRankSum=0.078;QD=0.92;ReadPosRankSum=-0.648;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:34,4:38:64.84:65,0,931
1    16950708    rs1628058    T    G    98.13    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.731;QD=19.63;ReadPosRankSum=0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:1,4:5:26.19:128,0,26
1    16952481    rs915311    A    G    149.41    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-0.674;QD=9.34;ReadPosRankSum=-1.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:5,11:16:89.90:179,0,90
1    16952764    rs1765550    A    C    153.82    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=49;Dels=0.0;FS=2.685;HRun=1;HaplotypeScore=2.76;MQ=59.88;MQ0=0;MQRankSum=-0.495;QD=3.14;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:40,9:49:99:184,0,1352
1    16952814    .    G    A    170.98    PASS    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=0.575;DP=81;Dels=0.0;FS=3.135;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-1.506;QD=2.11;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:71,10:81:99:201,0,2190
1    16952896    rs1762945    G    A    437.21    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=0.881;DB;DP=90;Dels=0.0;FS=2.38;HRun=0;HaplotypeScore=1.998;MQ=59.47;MQ0=0;MQRankSum=-1.355;QD=4.86;ReadPosRankSum=0.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:70,19:90:99:467,0,2078
1    16952952    rs1762946    G    A    381.07    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=53;Dels=0.0;FS=6.585;HRun=1;HaplotypeScore=1.8519;MQ=58.66;MQ0=0;MQRankSum=0.072;QD=7.19;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:37,16:53:99:411,0,1201
1    16952993    rs942268    C    G    925.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.96;MQ0=0;QD=35.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:958,72,0
1    16953121    rs1762947    C    T    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:2,2:4:58.44:70,0,58
1    16953881    rs9329439    C    G    49.16    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=2.526;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8934;MQ=49.87;MQ0=0;MQRankSum=-0.65;QD=3.07;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:13,3:16:79.15:79,0,326
1    16953889    rs1628369    G    C    45.95    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.227;DB;DP=15;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=2.9993;MQ=49.36;MQ0=0;MQRankSum=-0.072;QD=3.06;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501442    GT:AD:DP:GQ:PL    0/1:12,3:15:75.95:76,0,417
1    16958569    rs9329441    T    C    42.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=62.13;MQ0=0;MQRankSum=-0.358;QD=8.41;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:2,3:5:72.05:72,0,74
1    16958723    rs9730001    G    A    313.04    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=5.01;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6959;MQ=55.66;MQ0=0;MQRankSum=0.942;QD=6.39;ReadPosRankSum=0.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:37,12:49:99:343,0,1059
1    16958833    rs28687450    T    A    976.22    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=1.564;DB;DP=113;Dels=0.0;FS=7.917;HRun=1;HaplotypeScore=3.1309;MQ=53.11;MQ0=0;MQRankSum=-3.303;QD=8.64;ReadPosRankSum=0.292;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:74,38:113:99:1006,0,2218
1    16959101    rs698884    C    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
1    16959462    rs2093774    T    C    84.65    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=2.8;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.612;MQ=58.36;MQ0=0;MQRankSum=0.223;QD=1.49;ReadPosRankSum=2.205;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:49,7:57:99:115,0,1785
1    16959515    rs12048972    G    A    323.74    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.961;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6229;MQ=59.16;MQ0=0;MQRankSum=1.418;QD=2.84;ReadPosRankSum=0.041;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:94,20:114:99:354,0,3256
1    16959551    rs849696    T    C    1064.10    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=58.51;MQ0=0;MQRankSum=2.36;QD=7.29;ReadPosRankSum=0.549;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:104,41:146:99:1094,0,3200
1    16959602    rs1807293    C    T    742.38    HaplotypeScoreFilter13    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=3.791;DB;DP=182;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=36.4553;MQ=57.54;MQ0=0;MQRankSum=-0.401;QD=4.08;ReadPosRankSum=0.128;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:145,37:182:99:772,0,4214
1    16959612    rs9329443    A    G    2948.77    HaplotypeScoreFilter13    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.228;DB;DP=180;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=34.8771;MQ=57.43;MQ0=0;MQRankSum=-0.216;QD=16.38;ReadPosRankSum=-0.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:79,101:180:99:2979,0,2359
1    16959698    rs9730434    G    A    385.08    PASS    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=0.102;DB;DP=93;Dels=0.0;FS=2.421;HRun=0;HaplotypeScore=2.3644;MQ=57.23;MQ0=0;MQRankSum=-0.005;QD=4.14;ReadPosRankSum=-1.063;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:73,20:93:99:415,0,2318
1    16959732    rs112000683    T    TGGGCCTGCAGCA    1997.37    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=661.5465;IndelType=I;MQ=55.24;MQ0=0;MQRankSum=-1.708;QD=30.73;ReadPosRankSum=-1.948;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:47,10:64:99:2036,0,3236
1    16959814    rs1759187    C    T    180.33    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.38;MQ0=0;MQRankSum=0.146;QD=7.51;ReadPosRankSum=-1.083;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362058    GT:AD:DP:GQ:PL    0/1:14,10:24:99:210,0,433
1    16969246    rs11260857    G    A    122.82    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=4.093;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.801;MQ=51.94;MQ0=1;MQRankSum=-0.249;QD=2.51;ReadPosRankSum=0.392;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:34,8:49:99:153,0,1005
1    16969381    rs9727604    C    T    1238.98    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.701;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.49;MQ0=6;MQRankSum=-6.727;QD=13.04;ReadPosRankSum=1.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:40,55:95:99:1269,0,1025
1    16969715    rs9329444    A    G    268.20    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=0.179;QD=5.59;ReadPosRankSum=-0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:36,12:48:99:298,0,1320
1    16972068    rs1360575    A    G    37.03    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.25;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.47;MQ0=1;MQRankSum=-0.35;QD=1.85;ReadPosRankSum=-1.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:16,4:20:67.02:67,0,431
1    16972134    rs4661404    C    T    44.01    QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.737;DB;DP=43;Dels=0.0;FS=1.886;HRun=0;HaplotypeScore=0.9916;MQ=43.91;MQ0=2;MQRankSum=-1.574;QD=1.02;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:38,5:43:74:74,0,960
1    16972189    rs9728527    C    A    38.04    QDFilter2    AB=0.912;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=57;Dels=0.0;FS=8.256;HRun=0;HaplotypeScore=7.5764;MQ=51.2;MQ0=2;MQRankSum=-0.629;QD=0.67;ReadPosRankSum=-2.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:52,5:57:68.04:68,0,1431
1    16972190    rs4661880    T    C    134.43    PASS    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=56;Dels=0.0;FS=25.31;HRun=2;HaplotypeScore=7.5764;MQ=51.29;MQ0=2;MQRankSum=-5.09;QD=2.4;ReadPosRankSum=1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:43,13:56:99:164,0,1327
1    16972294    rs11260861    T    C    237.42    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.566;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9995;MQ=50.2;MQ0=0;MQRankSum=-4.062;QD=10.32;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:13,10:23:99:267,0,456
1    16972920    rs4661882    C    T    532.12    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=1.724;DB;DP=78;Dels=0.0;FS=1.102;HRun=0;HaplotypeScore=0.7887;MQ=59.32;MQ0=0;MQRankSum=0.842;QD=6.82;ReadPosRankSum=1.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:55,23:78:99:562,0,1636
1    16972940    rs1970921    G    A    385.89    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=4.011;DB;DP=92;Dels=0.0;FS=1.059;HRun=0;HaplotypeScore=3.2707;MQ=57.47;MQ0=0;MQRankSum=-1.265;QD=4.19;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:74,18:92:99:416,0,2004
1    16973152    rs1970920    A    G    293.28    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.104;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7982;MQ=49.9;MQ0=7;MQRankSum=-2.657;QD=3.19;ReadPosRankSum=0.006;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:68,24:92:99:323,0,2045
1    16973184    rs55828106    G    A    136.41    MQFilter40;QDFilter2    AB=0.901;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.7;MQ0=33;MQRankSum=0.301;QD=1.04;ReadPosRankSum=2.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:118,13:131:99:166,0,2512
1    16973388    rs76880030    C    T    34.91    MQFilter40;QDFilter2    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=3.742;DB;DP=130;Dels=0.0;FS=22.673;HRun=0;HaplotypeScore=1.6648;MQ=33.46;MQ0=32;MQRankSum=-4.789;QD=0.27;ReadPosRankSum=-1.483;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:87,43:130:64.91:65,0,2216
1    16973606    rs76859932    G    T    37.70    MQFilter40;QDFilter2    AB=0.908;AC=1;AF=0.50;AN=2;BaseQRankSum=3.031;DB;DP=173;Dels=0.0;FS=1.077;HRun=0;HaplotypeScore=8.285;MQ=39.78;MQ0=7;MQRankSum=1.616;QD=0.22;ReadPosRankSum=0.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:157,16:173:67.69:68,0,4056
1    16973919    rs141898836    A    G    108.58    MQFilter40;QDFilter2    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=62;Dels=0.0;FS=1.264;HRun=1;HaplotypeScore=0.0;MQ=35.04;MQ0=0;MQRankSum=-0.272;QD=1.75;ReadPosRankSum=1.341;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:51,11:62:99:139,0,1271
1    16973996    .    A    G    92.07    MQFilter40    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.563;DP=39;Dels=0.0;FS=1.864;HRun=0;HaplotypeScore=0.9159;MQ=33.13;MQ0=0;MQRankSum=-0.852;QD=2.36;ReadPosRankSum=-1.656;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:29,10:39:99:122,0,709
1    16974013    .    C    A    74.95    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.734;MQ=32.84;MQ0=0;MQRankSum=-0.371;QD=2.68;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:21,7:28:99:105,0,438
1    16974256    .    G    C    321.74    MQFilter40    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=3.834;DP=37;Dels=0.0;FS=7.368;HRun=2;HaplotypeScore=0.7887;MQ=33.65;MQ0=1;MQRankSum=-3.367;QD=8.7;ReadPosRankSum=-0.993;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:14,23:37:99:352,0,262
1    16974511    rs58679574    G    A    133.17    PASS    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=1.431;DB;DP=39;Dels=0.0;FS=3.893;HRun=0;HaplotypeScore=0.0;MQ=53.85;MQ0=0;MQRankSum=-0.715;QD=3.41;ReadPosRankSum=-0.452;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:31,8:39:99:163,0,941
1    16974637    rs16854791    T    C    240.58    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.469;DB;DP=60;Dels=0.0;FS=1.181;HRun=0;HaplotypeScore=1.8907;MQ=49.26;MQ0=1;MQRankSum=-4.715;QD=4.01;ReadPosRankSum=0.154;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:42,18:60:99:271,0,1265
1    16974662    rs28460410    C    A    67.29    QDFilter2    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.339;DB;DP=54;Dels=0.0;FS=1.471;HRun=0;HaplotypeScore=8.9724;MQ=43.97;MQ0=4;MQRankSum=-1.961;QD=1.25;ReadPosRankSum=-1.312;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:46,8:54:97.28:97,0,1230
1    16974666    rs28503658    C    T    135.80    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=54;Dels=0.0;FS=1.548;HRun=0;HaplotypeScore=8.8667;MQ=43.66;MQ0=4;MQRankSum=-0.146;QD=2.51;ReadPosRankSum=1.707;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:45,9:54:99:166,0,1075
1    16974869    rs4570422    G    C    421.06    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=44;Dels=0.0;FS=1.471;HRun=0;HaplotypeScore=2.994;MQ=54.28;MQ0=1;MQRankSum=2.232;QD=9.57;ReadPosRankSum=0.902;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL137798.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535991    GT:AD:DP:GQ:PL    0/1:27,17:44:99:451,0,726
1    16975002    rs2093773    C    T    144.24    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=58;Dels=0.0;FS=3.34;HRun=2;HaplotypeScore=2.9684;MQ=47.82;MQ0=7;MQRankSum=-3.404;QD=2.49;ReadPosRankSum=0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:41,17:58:99:174,0,1225
1    16975045    rs55763726    G    A    108.97    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=2.506;DB;DP=81;Dels=0.0;FS=3.022;HRun=0;HaplotypeScore=0.0;MQ=43.54;MQ0=7;MQRankSum=-2.459;QD=1.35;ReadPosRankSum=0.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:67,14:81:99:139,0,1658
1    16975084    rs28506999    G    A    67.67    MQFilter40;QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.571;DB;DP=86;Dels=0.0;FS=1.453;HRun=0;HaplotypeScore=3.7202;MQ=34.33;MQ0=12;MQRankSum=0.136;QD=0.79;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:73,13:86:97.67:98,0,1567
1    16975230    rs2761535    G    C    2392.09    MQFilter40    AB=0.146;AC=1;AF=0.50;AN=2;BaseQRankSum=4.248;DB;DP=151;Dels=0.0;FS=6.617;HRun=2;HaplotypeScore=1.6006;MQ=33.1;MQ0=22;MQRankSum=-4.091;QD=15.84;ReadPosRankSum=2.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:22,129:151:99:2422,0,372
1    16975278    rs111244008    A    ACC    245.73    QDFilter2    AB=0.897;AC=1;AF=0.50;AN=2;BaseQRankSum=1.688;DB;DP=129;FS=13.24;HRun=7;HaplotypeScore=691.003;IndelType=I;MQ=34.41;MQ0=22;MQRankSum=0.188;QD=1.48;ReadPosRankSum=-1.852;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:147,14:129:99:285,0,2953
1    16975699    .    A    C    76.94    MQFilter40;QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.922;DP=57;Dels=0.0;FS=1.737;HRun=0;HaplotypeScore=0.8321;MQ=21.2;MQ0=20;MQRankSum=1.313;QD=1.35;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:46,11:57:99:107,0,541
1    16975994    rs2261801    T    C    121.99    MQFilter40;QDFilter2    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=82;Dels=0.0;FS=27.994;HRun=1;HaplotypeScore=0.7887;MQ=39.07;MQ0=14;MQRankSum=-4.896;QD=1.49;ReadPosRankSum=-1.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:54,28:82:99:152,0,1740
1    16976032    rs2483047    A    C    184.98    MQFilter40;QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=102;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8255;MQ=39.12;MQ0=12;MQRankSum=2.622;QD=1.81;ReadPosRankSum=-0.852;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:88,14:102:99:215,0,2210
1    16976101    .    G    A    415.52    PASS    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=2.153;DP=148;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.2035;MQ=43.65;MQ0=1;MQRankSum=-5.414;QD=2.81;ReadPosRankSum=-0.79;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334429    GT:AD:DP:GQ:PL    0/1:120,28:148:99:446,0,3608
1    16976108    .    G    A    379.94    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DP=148;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2301;MQ=44.11;MQ0=3;MQRankSum=-5.705;QD=2.57;ReadPosRankSum=-0.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:120,27:148:99:410,0,3538
1    16976193    rs61772256    C    T    453.83    FSFilter60;HaplotypeScoreFilter13    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.728;DB;DP=185;Dels=0.0;FS=65.452;HRun=0;HaplotypeScore=16.7048;MQ=43.96;MQ0=15;MQRankSum=-7.731;QD=2.45;ReadPosRankSum=-0.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:133,52:185:99:484,0,3985
1    16976335    .    C    A    792.42    MQFilter40    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.541;DP=165;Dels=0.0;FS=7.648;HRun=0;HaplotypeScore=8.21;MQ=36.54;MQ0=19;MQRankSum=0.338;QD=4.8;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:125,40:165:99:822,0,2925
1    16976451    .    G    A    229.35    MQFilter40;QDFilter2    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DP=200;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=19.92;MQ0=89;MQRankSum=-1.974;QD=1.15;ReadPosRankSum=-2.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:121,79:200:99:259,0,1619
1    16976569    rs78288272    G    A    210.04    MQFilter40;QDFilter2    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.144;DB;DP=144;Dels=0.0;FS=5.73;HRun=0;HaplotypeScore=0.7887;MQ=32.45;MQ0=43;MQRankSum=-3.895;QD=1.46;ReadPosRankSum=0.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:106,38:144:99:240,0,2118
1    16976585    rs1135350    C    T    283.29    MQFilter40;QDFilter2    AB=0.865;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.442;DB;DP=178;Dels=0.0;FS=7.337;HRun=0;HaplotypeScore=0.9933;MQ=32.47;MQ0=41;MQRankSum=4.189;QD=1.59;ReadPosRankSum=1.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:154,24:178:99:313,0,2896
1    16976649    rs1057333    C    T    653.23    HaplotypeScoreFilter13;MQFilter40    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.232;DB;DP=250;DS;Dels=0.0;FS=2.405;HRun=0;HaplotypeScore=20.669;MQ=36.51;MQ0=16;MQRankSum=-3.263;QD=2.61;ReadPosRankSum=-1.587;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:204,45:250:99:683,0,4868
1    16976679    rs1065528    G    A    1831.94    HaplotypeScoreFilter13;MQFilter40    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=3.205;DB;DP=235;DS;Dels=0.0;FS=2.642;HRun=0;HaplotypeScore=48.1646;MQ=33.61;MQ0=25;MQRankSum=4.408;QD=7.8;ReadPosRankSum=0.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:151,83:235:99:1862,0,2600
1    16976681    rs3175284    G    T    468.91    HaplotypeScoreFilter13;MQFilter40    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=4.318;DB;DP=230;DS;Dels=0.0;FS=0.709;HRun=1;HaplotypeScore=45.2754;MQ=33.07;MQ0=29;MQRankSum=-2.808;QD=2.04;ReadPosRankSum=-0.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:190,40:230:99:499,0,3745
1    16976786    .    G    C    707.44    MQFilter40    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.428;DP=136;Dels=0.0;FS=8.137;HRun=0;HaplotypeScore=0.6651;MQ=35.68;MQ0=21;MQRankSum=-0.78;QD=5.2;ReadPosRankSum=-0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:73,62:136:99:737,0,1716
1    16976896    .    A    G    47.97    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.44;MQ0=3;MQRankSum=-1.28;QD=2.0;ReadPosRankSum=1.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1182A14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418421    GT:AD:DP:GQ:PL    0/1:16,8:24:77.97:78,0,533
1    17007855    rs1236822    C    T    74.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.0;MQ0=0;QD=24.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL021920.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419267    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
1    17013839    rs1765548    G    C    735.93    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=2.432;DB;DP=128;Dels=0.0;FS=3.227;HRun=0;HaplotypeScore=0.9578;MQ=58.57;MQ0=0;MQRankSum=-0.807;QD=5.75;ReadPosRankSum=0.954;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:100,28:128:99:766,0,3125
1    17013916    rs9662672    G    A    236.78    QDFilter2    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=1.704;DB;DP=146;Dels=0.0;FS=5.177;HRun=0;HaplotypeScore=0.0;MQ=56.5;MQ0=0;MQRankSum=1.762;QD=1.62;ReadPosRankSum=1.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:127,19:146:99:267,0,4055
1    17013945    rs545745    A    G    525.10    PASS    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=1.648;DB;DP=111;Dels=0.0;FS=5.688;HRun=2;HaplotypeScore=1.8288;MQ=55.58;MQ0=0;MQRankSum=1.401;QD=4.73;ReadPosRankSum=1.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:89,22:111:99:555,0,2895
1    17017621    .    TAGA    T    548.01    PASS    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DP=62;FS=1.21;HRun=0;HaplotypeScore=312.5205;IndelType=D;MQ=58.39;MQ0=0;MQRankSum=-2.134;QD=8.84;ReadPosRankSum=0.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:47,15:62:99:587,0,2929
1    17017675    rs2743471    C    A    799.98    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.809;DB;DP=61;Dels=0.0;FS=5.297;HRun=0;HaplotypeScore=2.179;MQ=58.57;MQ0=0;MQRankSum=-0.603;QD=13.11;ReadPosRankSum=-0.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:28,33:61:99:830,0,749
1    17017717    rs12561804    C    T    459.42    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.395;DB;DP=50;Dels=0.0;FS=1.161;HRun=2;HaplotypeScore=0.9995;MQ=59.19;MQ0=0;MQRankSum=0.192;QD=9.19;ReadPosRankSum=-1.203;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:32,18:50:99:489,0,996
1    17017734    rs12561805    C    T    387.38    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.102;DB;DP=42;Dels=0.0;FS=1.26;HRun=0;HaplotypeScore=7.9963;MQ=58.89;MQ0=0;MQRankSum=1.388;QD=9.22;ReadPosRankSum=0.789;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:29,13:42:99:417,0,882
1    17017739    .    G    A    104.68    HaplotypeScoreFilter13    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=18.9641;MQ=58.84;MQ0=0;MQRankSum=0.761;QD=2.62;ReadPosRankSum=-0.423;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:32,8:40:99:135,0,1123
1    17017747    .    A    G    257.23    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=2.718;DP=36;Dels=0.0;FS=3.261;HRun=0;HaplotypeScore=5.9942;MQ=58.18;MQ0=0;MQRankSum=0.622;QD=7.15;ReadPosRankSum=-0.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:24,11:36:99:287,0,704
1    17022952    rs557690    C    A    3484.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.71;MQ0=0;QD=31.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3484,265,0
1    17023182    rs614461    C    G    272.08    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.13;MQ0=0;MQRankSum=-0.167;QD=6.8;ReadPosRankSum=-0.137;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:27,13:40:99:302,0,915
1    17023511    rs563144    C    A    476.76    PASS    AB=0.118;AC=1;AF=0.50;AN=2;BaseQRankSum=0.522;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.63;MQ0=0;MQRankSum=-0.075;QD=28.04;ReadPosRankSum=-0.373;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:2,15:17:26.84:507,0,27
1    17023569    rs563960    T    C    246.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:280,24,0
1    17025690    rs536183    C    T    49.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.17;MQ0=0;QD=16.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    17025786    rs679703    C    G    41.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.45;MQ0=0;QD=20.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    17025852    rs537296    T    C    41.01    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=0.731;QD=8.2;ReadPosRankSum=0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:1,4:5:24.41:71,0,24
1    17026466    rs114606754    C    T    99.43    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.231;QD=7.65;ReadPosRankSum=0.694;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:9,4:13:99:129,0,209
1    17026504    .    G    A    85.51    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.143;QD=6.11;ReadPosRankSum=0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:9,5:14:99:116,0,189
1    17029281    rs137866947    G    C    527.78    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.184;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.03;MQ0=0;MQRankSum=0.951;QD=7.13;ReadPosRankSum=-1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    0/1:49,25:74:99:558,0,1527
1    17029513    rs523936    C    G    405.01    PASS    AB=0.158;AC=1;AF=0.50;AN=2;BaseQRankSum=2.251;DB;DP=19;Dels=0.0;FS=3.542;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.369;QD=21.32;ReadPosRankSum=-0.711;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    0/1:3,16:19:65.55:435,0,66
1    17030325    rs601893    A    G    151.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.99;MQ0=0;QD=21.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:184,15,0
1    17030336    rs4661915    C    T    48.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=44.02;MQ0=0;MQRankSum=0.0;QD=5.41;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    0/1:5,4:9:78.69:79,0,149
1    17030415    .    C    G    141.40    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.236;DP=48;Dels=0.0;FS=9.156;HRun=0;HaplotypeScore=0.0;MQ=48.86;MQ0=0;MQRankSum=-1.07;QD=2.95;ReadPosRankSum=0.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    0/1:34,14:48:99:171,0,1060
1    17030504    rs601031    T    A    296.64    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.114;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8009;MQ=47.7;MQ0=0;MQRankSum=-2.106;QD=3.19;ReadPosRankSum=-1.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    0/1:42,24:93:99:327,0,1284
1    17030515    .    G    A    218.61    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DP=84;Dels=0.0;FS=1.48;HRun=1;HaplotypeScore=1.7128;MQ=48.01;MQ0=0;MQRankSum=-2.308;QD=2.6;ReadPosRankSum=-0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    0/1:62,21:84:99:249,0,1528
1    17030590    rs590170    G    A    188.34    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=40;Dels=0.0;FS=2.561;HRun=0;HaplotypeScore=0.0;MQ=46.82;MQ0=0;MQRankSum=-0.016;QD=4.71;ReadPosRankSum=0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    0/1:30,10:40:99:218,0,932
1    17030716    rs4661917    G    A    81.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=-0.72;QD=11.66;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP1-163M9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535711    GT:AD:DP:GQ:PL    0/1:2,4:7:61.28:112,0,61
1    17033758    rs1736691    A    G    305.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.55;MQ0=0;QD=25.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    1/1:0,12:12:30.06:339,30,0
1    17033805    rs59259153    C    T    210.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.415;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=52.72;MQ0=0;MQRankSum=-2.489;QD=11.68;ReadPosRankSum=-1.025;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:8,10:18:99:240,0,199
1    17033854    rs2476568    C    T    144.42    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DB;DP=18;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=54.35;MQ0=0;MQRankSum=-0.914;QD=8.02;ReadPosRankSum=-0.818;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:8,9:18:99:174,0,205
1    17034041    rs2743505    T    C    320.55    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=1.557;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=57.05;MQ0=0;MQRankSum=0.156;QD=20.03;ReadPosRankSum=-0.778;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:3,13:16:39.47:351,0,39
1    17034125    rs79472512    C    CAGCT    304.37    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.253;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=82.8963;IndelType=I;MQ=55.57;MQ0=0;MQRankSum=-0.69;QD=16.02;ReadPosRankSum=0.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:14,5:19:99:343,0,638
1    17034595    .    C    G    35.48    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DP=21;Dels=0.0;FS=2.35;HRun=1;HaplotypeScore=0.0;MQ=42.68;MQ0=0;MQRankSum=0.047;QD=1.69;ReadPosRankSum=-0.992;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:17,4:21:65.47:65,0,405
1    17046456    rs3856292    T    C    47.49    QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=1.974;DB;DP=31;Dels=0.0;FS=2.599;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.972;QD=1.53;ReadPosRankSum=0.442;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:27,4:31:77.49:77,0,915
1    17046549    rs1755332    G    A    965.31    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=2.75;DB;DP=62;Dels=0.0;FS=1.199;HRun=0;HaplotypeScore=1.7219;MQ=58.88;MQ0=0;MQRankSum=1.532;QD=15.57;ReadPosRankSum=-1.514;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:22,39:62:99:995,0,395
1    17046595    rs3856293    T    C    260.84    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.261;DB;DP=71;Dels=0.0;FS=4.613;HRun=0;HaplotypeScore=3.7783;MQ=59.41;MQ0=0;MQRankSum=0.094;QD=3.67;ReadPosRankSum=1.263;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:55,16:71:99:291,0,1688
1    17046613    rs3856294    C    T    1372.08    PASS    AB=0.338;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.057;DB;DP=77;Dels=0.0;FS=0.92;HRun=0;HaplotypeScore=0.9993;MQ=59.46;MQ0=0;MQRankSum=0.312;QD=17.82;ReadPosRankSum=-2.119;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:26,51:77:99:1402,0,719
1    17046796    rs1755333    G    A    162.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:195,15,0
1    17046831    rs9661747    A    G    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=ESPNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270691    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
1    17083568    rs10159208    G    A    155.52    MQFilter40    AB=0.242;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.156;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=24.12;MQ0=12;MQRankSum=-2.35;QD=4.71;ReadPosRankSum=-0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442552    GT:AD:DP:GQ:PL    0/1:8,25:33:99:186,0,220
1    17083597    rs186155999    G    A    53.48    MQFilter40;QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=3.426;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9092;MQ=32.12;MQ0=14;MQRankSum=-2.423;QD=0.78;ReadPosRankSum=-1.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442552    GT:AD:DP:GQ:PL    0/1:58,11:69:83.47:83,0,1236
1    17083652    rs113710576    C    T    593.61    MQFilter40    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=181;Dels=0.0;FS=6.985;HRun=2;HaplotypeScore=3.3976;MQ=36.09;MQ0=10;MQRankSum=-0.386;QD=3.28;ReadPosRankSum=0.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442552    GT:AD:DP:GQ:PL    0/1:148,33:181:99:624,0,4228
1    17083671    rs1057420    C    G    2555.50    MQFilter40    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-9.363;DB;DP=212;Dels=0.0;FS=5.491;HRun=0;HaplotypeScore=6.2878;MQ=34.37;MQ0=18;MQRankSum=1.176;QD=12.0;ReadPosRankSum=-2.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442552    GT:AD:DP:GQ:PL    0/1:89,123:212:99:2585,0,2066
1    17083685    rs3197973    C    A    2222.17    MQFilter40    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.786;DB;DP=239;Dels=0.0;FS=5.883;HRun=2;HaplotypeScore=5.4777;MQ=31.6;MQ0=29;MQRankSum=0.771;QD=9.3;ReadPosRankSum=-1.905;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442552    GT:AD:DP:GQ:PL    0/1:121,118:239:99:2252,0,2450
1    17083782    .    A    C    271.84    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.224;DP=156;DS;Dels=0.0;FS=15.672;HRun=0;HaplotypeScore=36.2669;MQ=26.09;MQ0=30;MQRankSum=-1.165;QD=1.74;ReadPosRankSum=1.221;SNPEFF_AMINO_ACID_CHANGE=F672C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17081603_17083888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:127,29:156:99:302,0,2487
1    17083787    .    G    A    954.41    HaplotypeScoreFilter13;MQFilter40    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=4.674;DP=148;DS;Dels=0.0;FS=7.134;HRun=0;HaplotypeScore=25.3771;MQ=26.88;MQ0=26;MQRankSum=0.501;QD=6.45;ReadPosRankSum=-0.072;SNPEFF_AMINO_ACID_CHANGE=A670;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17081603_17083888;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:95,52:148:99:984,0,1715
1    17083807    rs9286084    T    C    833.95    MQFilter40    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.494;DB;DP=123;DS;Dels=0.0;FS=30.174;HRun=0;HaplotypeScore=12.5532;MQ=28.03;MQ0=18;MQRankSum=0.21;QD=6.78;ReadPosRankSum=-1.648;SNPEFF_AMINO_ACID_CHANGE=T664A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17081603_17083888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:60,63:123:99:864,0,1343
1    17083837    rs7798    T    C    1078.59    MQFilter40    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=115;Dels=0.0;FS=1.233;HRun=1;HaplotypeScore=0.8321;MQ=26.91;MQ0=26;MQRankSum=-0.457;QD=9.38;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=K654E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17081603_17083888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:62,53:115:99:1109,0,857
1    17083888    rs75141545    C    T    565.50    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.619;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.18;MQ0=63;MQRankSum=2.27;QD=4.88;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=G637S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17081603_17083888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:69,47:116:99:595,0,303
1    17083929    rs138589297    A    C    59.39    MQFilter40;QDFilter2    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=140;Dels=0.0;FS=1.987;HRun=1;HaplotypeScore=6.6109;MQ=12.55;MQ0=82;MQRankSum=-1.327;QD=0.42;ReadPosRankSum=2.767;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544155    GT:AD:DP:GQ:PL    0/1:90,50:140:89.39:89,0,571
1    17083984    rs71269410    C    T    308.56    MQFilter40;QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.553;DB;DP=250;DS;Dels=0.0;FS=5.073;HRun=0;HaplotypeScore=3.681;MQ=14.78;MQ0=101;MQRankSum=1.502;QD=1.23;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544155    GT:AD:DP:GQ:PL    0/1:195,55:250:99:339,0,1159
1    17084006    rs2446544    C    T    1151.86    MQFilter40    AB=0.272;AC=1;AF=0.50;AN=2;BaseQRankSum=0.986;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=15.12;MQ0=93;MQRankSum=-0.42;QD=4.61;ReadPosRankSum=0.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544155    GT:AD:DP:GQ:PL    0/1:68,182:250:99:1182,0,327
1    17084021    rs2446543    C    G    349.44    MQFilter40;QDFilter2    AB=0.801;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.1;DB;DP=246;DS;Dels=0.0;FS=4.815;HRun=2;HaplotypeScore=1.9411;MQ=18.56;MQ0=79;MQRankSum=1.031;QD=1.42;ReadPosRankSum=-0.904;SNPEFF_AMINO_ACID_CHANGE=A634P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17084013_17084152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:197,49:246:99:379,0,1681
1    17084755    rs140682808    T    C    93.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.41;MQ0=6;QD=4.67;SNPEFF_AMINO_ACID_CHANGE=V485;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17084711_17084788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    1/1:0,20:20:12.01:126,12,0
1    17084815    rs11260922    G    A    234.69    MQFilter40    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.391;DB;DP=26;Dels=0.0;FS=3.522;HRun=2;HaplotypeScore=0.9332;MQ=20.7;MQ0=7;MQRankSum=-0.615;QD=9.03;ReadPosRankSum=-0.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    0/1:6,20:26:24.06:265,0,24
1    17084968    rs2761533    G    C    745.83    MQFilter40    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=4.747;DB;DP=138;Dels=0.0;FS=12.499;HRun=2;HaplotypeScore=3.7136;MQ=34.06;MQ0=16;MQRankSum=3.68;QD=5.4;ReadPosRankSum=-1.302;SNPEFF_AMINO_ACID_CHANGE=R472G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17084961_17085081;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:95,42:138:99:776,0,1784
1    17085165    rs2490828    G    C    511.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.7208;MQ=21.01;MQ0=21;QD=8.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    1/1:0,47:60:51.11:544,51,0
1    17085171    .    T    C    51.85    MQFilter40;QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.021;DP=59;Dels=0.0;FS=12.879;HRun=2;HaplotypeScore=9.8256;MQ=22.05;MQ0=22;MQRankSum=2.441;QD=0.88;ReadPosRankSum=-0.531;SNPEFF_AMINO_ACID_CHANGE=N434D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17085171_17085206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:50,9:59:81.84:82,0,503
1    17085255    rs2281029    A    G    481.13    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.414;DB;DP=35;Dels=0.03;FS=7.915;HRun=3;HaplotypeScore=0.0;MQ=30.53;MQ0=8;MQRankSum=1.98;QD=13.36;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    0/1:15,20:35:99:511,0,140
1    17085265    rs2490829    T    C    67.99    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.13;DB;DP=32;Dels=0.0;FS=9.129;HRun=0;HaplotypeScore=0.9987;MQ=33.74;MQ0=4;MQRankSum=-2.517;QD=2.12;ReadPosRankSum=2.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    0/1:20,12:32:97.99:98,0,579
1    17085267    rs2077142    A    G    71    MQFilter40    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.885;DB;DP=31;Dels=0.0;FS=12.161;HRun=2;HaplotypeScore=0.9987;MQ=34.03;MQ0=3;MQRankSum=-2.469;QD=2.29;ReadPosRankSum=1.407;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    0/1:19,12:31:99:101,0,561
1    17085412    rs872964    C    T    294.27    MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.565;DB;DP=69;Dels=0.0;FS=2.454;HRun=0;HaplotypeScore=0.9933;MQ=36.8;MQ0=5;MQRankSum=-1.984;QD=4.26;ReadPosRankSum=1.056;SNPEFF_AMINO_ACID_CHANGE=A427T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17085298_17085530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:48,21:69:99:324,0,1177
1    17085427    rs2002186    T    C    579.40    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.273;DB;DP=74;Dels=0.0;FS=2.044;HRun=0;HaplotypeScore=2.932;MQ=38.64;MQ0=2;MQRankSum=-2.342;QD=7.83;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=I422V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17085298_17085530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:43,31:74:99:609,0,1278
1    17085502    rs2329006    T    C    659.51    MQFilter40    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.45;DB;DP=85;Dels=0.0;FS=6.249;HRun=1;HaplotypeScore=2.8216;MQ=28.24;MQ0=14;MQRankSum=0.463;QD=7.76;ReadPosRankSum=-0.719;SNPEFF_AMINO_ACID_CHANGE=M397V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17085298_17085530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:38,47:85:99:690,0,504
1    17085564    rs3851921    A    G    237.77    MQFilter40    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.164;DB;DP=82;Dels=0.0;FS=2.982;HRun=1;HaplotypeScore=1.8857;MQ=28.93;MQ0=12;MQRankSum=-5.916;QD=2.9;ReadPosRankSum=-1.517;SNPEFF_AMINO_ACID_CHANGE=L376P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17085561_17085663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:35,47:82:99:268,0,858
1    17085671    rs3863806    C    G    89.95    MQFilter40;QDFilter2    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.475;DB;DP=58;Dels=0.0;FS=5.224;HRun=2;HaplotypeScore=0.0;MQ=32.38;MQ0=3;MQRankSum=-3.476;QD=1.55;ReadPosRankSum=1.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    0/1:44,14:58:99:120,0,852
1    17085677    rs3863805    G    A    101.25    MQFilter40;QDFilter2    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.21;DB;DP=59;Dels=0.0;FS=8.531;HRun=0;HaplotypeScore=0.0;MQ=33.68;MQ0=3;MQRankSum=-2.52;QD=1.72;ReadPosRankSum=1.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    0/1:44,14:59:99:131,0,882
1    17085712    rs3863803    C    T    40.77    MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=55;Dels=0.0;FS=2.0;HRun=1;HaplotypeScore=4.9245;MQ=34.43;MQ0=2;MQRankSum=-1.854;QD=0.74;ReadPosRankSum=-1.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    0/1:41,10:55:70.76:71,0,950
1    17085834    rs2005622    G    T    597.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.16;MQ0=7;QD=18.1;SNPEFF_AMINO_ACID_CHANGE=T319;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17085764_17085894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    1/1:0,33:33:51.14:630,51,0
1    17085908    rs1805293    C    G    333.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=35.71;MQ0=4;QD=15.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    1/1:2,19:21:33.07:367,33,0
1    17086236    .    G    C    95.67    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.81;MQ0=3;MQRankSum=0.0;QD=7.97;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545160    GT:AD:DP:GQ:PL    0/1:6,6:12:21.98:126,0,22
1    17086870    .    T    C    334.59    MQFilter40    AC=2;AF=1.00;AN=2;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.82;MQ0=6;QD=15.93;SNPEFF_AMINO_ACID_CHANGE=S152G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17086849_17086985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    1/1:0,21:21:33.09:368,33,0
1    17086937    .    G    T    56.77    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.106;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=14.65;MQ=22.02;MQ0=22;MQRankSum=-1.858;QD=1.29;ReadPosRankSum=0.784;SNPEFF_AMINO_ACID_CHANGE=N129K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17086849_17086985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:38,6:44:86.76:87,0,510
1    17086939    .    TAC    T    142.80    PASS    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DP=22;FS=0.0;HRun=0;HaplotypeScore=125.5268;IndelType=D;MQ=22.27;MQ0=21;MQRankSum=-1.858;QD=3.32;ReadPosRankSum=0.95;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_17086849_17086985;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:38,5:22:99:182,0,752
1    17087103    .    G    C    224.57    MQFilter40;QDFilter2    AB=0.885;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.982;DP=192;Dels=0.0;FS=0.989;HRun=0;HaplotypeScore=4.7651;MQ=34.44;MQ0=61;MQRankSum=-1.738;QD=1.17;ReadPosRankSum=1.302;SNPEFF_AMINO_ACID_CHANGE=S105C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087064_17087178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:170,22:192:99:255,0,3183
1    17087116    .    C    T    250.99    MQFilter40;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=4.189;DP=205;Dels=0.0;FS=0.977;HRun=0;HaplotypeScore=2.8106;MQ=32.22;MQ0=68;MQRankSum=-0.65;QD=1.22;ReadPosRankSum=1.072;SNPEFF_AMINO_ACID_CHANGE=V101M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087064_17087178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:182,22:205:99:281,0,2917
1    17087159    rs181826692    G    C    66.24    MQFilter40;QDFilter2    AB=0.92;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.651;DB;DP=226;Dels=0.0;FS=17.559;HRun=0;HaplotypeScore=0.0;MQ=22.93;MQ0=101;MQRankSum=-0.682;QD=0.29;ReadPosRankSum=-0.828;SNPEFF_AMINO_ACID_CHANGE=I86M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087064_17087178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:208,18:226:96.23:96,0,3053
1    17087244    rs140259009    AC    A    1794.04    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.347;DB;DP=134;FS=0.664;HRun=5;HaplotypeScore=759.7233;IndelType=D;MQ=33.86;MQ0=62;MQRankSum=0.976;QD=8.75;ReadPosRankSum=0.386;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:131,73:134:99:1833,0,2123
1    17087262    rs2926375    C    T    1583.94    MQFilter40    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.709;DB;DP=192;Dels=0.0;FS=4.315;HRun=1;HaplotypeScore=4.4596;MQ=36.59;MQ0=52;MQRankSum=-0.802;QD=8.25;ReadPosRankSum=1.433;SNPEFF_AMINO_ACID_CHANGE=E108K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087246_17087368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:91,100:192:99:1614,0,2002
1    17087292    rs2179161    A    G    80.37    HaplotypeScoreFilter13;QDFilter2    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.064;DB;DP=171;Dels=0.0;FS=44.327;HRun=0;HaplotypeScore=26.7938;MQ=45.58;MQ0=13;MQRankSum=-6.676;QD=0.47;ReadPosRankSum=0.243;SNPEFF_AMINO_ACID_CHANGE=W68R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087256_17087368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:136,35:171:99:110,0,4144
1    17087299    rs2179162    T    C    1811.99    HaplotypeScoreFilter13    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=171;Dels=0.0;FS=17.678;HRun=0;HaplotypeScore=46.6793;MQ=45.02;MQ0=18;MQRankSum=-1.902;QD=10.6;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=S65;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087256_17087368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:74,97:171:99:1842,0,2175
1    17087305    rs12046578    G    C    323.21    HaplotypeScoreFilter13;QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.273;DB;DP=176;Dels=0.0;FS=34.664;HRun=0;HaplotypeScore=34.239;MQ=45.48;MQ0=18;MQRankSum=-6.637;QD=1.84;ReadPosRankSum=-1.117;SNPEFF_AMINO_ACID_CHANGE=P63;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087256_17087368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:130,46:176:99:353,0,3990
1    17087365    rs2446556    C    G    2585.10    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.448;DB;DP=168;Dels=0.0;FS=1.328;HRun=1;HaplotypeScore=2.5648;MQ=48.39;MQ0=8;MQRankSum=-3.155;QD=15.39;ReadPosRankSum=0.965;SNPEFF_AMINO_ACID_CHANGE=A43;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087256_17087368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:63,105:168:99:2615,0,1664
1    17087465    rs11260924    G    A    1236.15    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=235;Dels=0.0;FS=2.738;HRun=0;HaplotypeScore=2.642;MQ=48.18;MQ0=1;MQRankSum=-2.258;QD=5.26;ReadPosRankSum=1.747;SNPEFF_AMINO_ACID_CHANGE=P37L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087450_17087541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:167,68:235:99:1266,0,4595
1    17087521    rs11589598    G    A    603.64    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=3.227;DB;DP=167;Dels=0.0;FS=5.898;HRun=0;HaplotypeScore=2.9694;MQ=44.03;MQ0=4;MQRankSum=1.183;QD=3.61;ReadPosRankSum=-0.94;SNPEFF_AMINO_ACID_CHANGE=P18;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087450_17087541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:131,36:167:99:634,0,3046
1    17087530    .    C    T    511.79    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=4.922;DP=155;Dels=0.0;FS=6.288;HRun=0;HaplotypeScore=1.9722;MQ=44.16;MQ0=4;MQRankSum=1.631;QD=3.3;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=A15;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087450_17087541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389184    GT:AD:DP:GQ:PL    0/1:121,34:155:99:542,0,2689
1    17087541    rs113982165    GGTGCT    G    1320.13    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=3.348;DB;DP=117;FS=2.152;HRun=0;HaplotypeScore=893.6398;IndelType=D;MQ=44.2;MQ0=4;MQRankSum=-2.098;QD=9.3;ReadPosRankSum=0.799;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_17087450_17087597;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:102,40:117:99:1359,0,7312
1    17087582    rs10907280    G    A    850.65    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.052;DB;DP=84;Dels=0.0;FS=6.362;HRun=1;HaplotypeScore=1.6643;MQ=45.09;MQ0=2;MQRankSum=-5.59;QD=10.13;ReadPosRankSum=-0.85;SNPEFF_AMINO_ACID_CHANGE=S28L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17087450_17087597;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MST1P9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334998    GT:AD:DP:GQ:PL    0/1:32,52:84:99:881,0,920
1    17195000    .    T    G    135.35    PASS    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DP=64;Dels=0.0;FS=5.294;HRun=0;HaplotypeScore=0.0;MQ=50.45;MQ0=0;MQRankSum=1.487;QD=2.11;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:55,9:64:99:165,0,1730
1    17195145    rs116833708    G    C    888.10    PASS    AB=0.186;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.677;DB;DP=43;Dels=0.0;FS=3.804;HRun=0;HaplotypeScore=0.0;MQ=46.72;MQ0=3;MQRankSum=-0.238;QD=20.65;ReadPosRankSum=-0.677;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:8,35:43:99:918,0,184
1    17197563    rs7556482    G    T    578.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=4.506;DB;DP=90;Dels=0.0;FS=10.582;HRun=0;HaplotypeScore=4.8249;MQ=46.07;MQ0=7;MQRankSum=-7.047;QD=6.42;ReadPosRankSum=1.427;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:50,40:90:99:608,0,1336
1    17197597    rs191458543    G    A    159.89    QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.403;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8093;MQ=46.03;MQ0=8;MQRankSum=-3.762;QD=1.55;ReadPosRankSum=-1.665;SNPEFF_AMINO_ACID_CHANGE=G124;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17196254_17197628;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:78,24:103:99:190,0,2086
1    17197685    rs7513766    G    A    466.12    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.621;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.6813;MQ=45.65;MQ0=2;MQRankSum=-3.563;QD=8.79;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:27,26:53:99:496,0,779
1    17197724    rs3897252    C    G    34.39    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=1.715;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=6.6295;MQ=49.61;MQ0=0;MQRankSum=-2.165;QD=0.82;ReadPosRankSum=-0.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:35,7:42:64.38:64,0,1134
1    17198518    rs141922545    T    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.93;MQ0=10;QD=2.74;SNPEFF_AMINO_ACID_CHANGE=K42N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17198304_17198668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    1/1:0,13:13:6.02:67,6,0
1    17198698    rs12091630    A    T    321.13    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=78;Dels=0.0;FS=4.645;HRun=0;HaplotypeScore=2.5589;MQ=42.56;MQ0=6;MQRankSum=1.619;QD=4.12;ReadPosRankSum=0.873;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:63,15:78:99:351,0,1460
1    17198720    rs7367792    T    C    266.49    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=61;Dels=0.0;FS=1.49;HRun=3;HaplotypeScore=0.9997;MQ=46.4;MQ0=2;MQRankSum=-5.358;QD=4.37;ReadPosRankSum=-0.466;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:39,22:61:99:296,0,1095
1    17198765    rs60412129    G    A    195.67    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.36;MQ0=1;MQRankSum=-3.576;QD=4.35;ReadPosRankSum=0.412;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BX284668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356370    GT:AD:DP:GQ:PL    0/1:32,13:45:99:226,0,946
1    17248885    rs6694144    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    17249395    rs6586567    A    G    1814.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.797;MQ=59.07;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1847,135,0
1    17250762    rs58609892    G    C    262.67    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=19;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=13.82;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:9,10:19:99:293,0,270
1    17250836    rs57174186    A    G    276.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.567;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4942;MQ=59.06;MQ0=0;MQRankSum=-0.113;QD=13.8;ReadPosRankSum=0.416;SNPEFF_AMINO_ACID_CHANGE=T42;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17250820_17250974;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445545    GT:AD:DP:GQ:PL    0/1:10,10:20:99:306,0,281
1    17250991    rs60275838    T    C    49.42    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.33;MQ0=0;MQRankSum=-0.212;QD=3.53;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:10,4:14:79.42:79,0,288
1    17263214    rs145088791    C    T    68.80    QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=1.113;DB;DP=39;Dels=0.0;FS=2.496;HRun=0;HaplotypeScore=0.7887;MQ=58.81;MQ0=0;MQRankSum=-0.063;QD=1.76;ReadPosRankSum=0.273;SNPEFF_AMINO_ACID_CHANGE=R228W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17263132_17263368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445545    GT:AD:DP:GQ:PL    0/1:34,5:39:98.79:99,0,1036
1    17263557    rs9435713    G    A    279.02    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.684;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=16.41;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:7,10:17:99:309,0,245
1    17264090    rs13373796    A    G    146.17    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.59;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6141;MQ=54.45;MQ0=0;MQRankSum=-3.084;QD=3.25;ReadPosRankSum=-1.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:36,9:45:99:176,0,1210
1    17264296    rs9435792    G    A    312.78    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=1.55;QD=14.22;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:10,12:22:99:343,0,333
1    17264677    rs6586575    G    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    17265327    rs4269813    A    G    135.05    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=19;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=7.11;ReadPosRankSum=-1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:13,6:19:99:165,0,431
1    17265366    rs4269812    C    G    206.74    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.023;DB;DP=33;Dels=0.0;FS=1.67;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.11;QD=6.26;ReadPosRankSum=2.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:25,8:33:99:237,0,835
1    17271989    rs147139590    G    A    258.78    MQFilter40    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=1.622;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.21;MQ0=9;MQRankSum=1.622;QD=7.19;ReadPosRankSum=-0.753;SNPEFF_AMINO_ACID_CHANGE=R556H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17271957_17272101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445545    GT:AD:DP:GQ:PL    0/1:24,11:36:99:289,0,220
1    17272037    rs142404824    G    A    160.37    MQFilter40    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=23;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.6651;MQ=36.16;MQ0=4;MQRankSum=0.244;QD=6.97;ReadPosRankSum=-0.732;SNPEFF_AMINO_ACID_CHANGE=R572H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17271957_17272101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445545    GT:AD:DP:GQ:PL    0/1:15,8:23:99:190,0,232
1    17272980    rs140471996    T    C    244.79    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.669;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8305;MQ=59.86;MQ0=0;MQRankSum=-0.635;QD=5.83;ReadPosRankSum=1.078;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492631    GT:AD:DP:GQ:PL    0/1:32,10:42:99:275,0,979
1    17275072    rs6690301    A    G    76.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=10.96;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492631    GT:AD:DP:GQ:PL    0/1:3,4:7:64.17:107,0,64
1    17280578    rs147342078    T    C    240.26    MQFilter40    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.14;MQ0=35;MQRankSum=1.779;QD=3.88;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477773    GT:AD:DP:GQ:PL    0/1:27,35:62:64.65:270,0,65
1    17281003    rs2076606    T    C    94.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467880    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:127,12,0
1    17295679    rs4920574    T    C    323.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=A1596;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17295611_17295835;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445545    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:356,27,0
1    17297289    rs9435656    C    T    376.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465021    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:410,33,0
1    17301448    rs2235933    C    T    73.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.4;MQ0=2;QD=14.64;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17300997_17301518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375534    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:105,9,0
1    17301672    rs761423    T    C    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
1    17301780    rs761422    A    G    46.86    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.109;QD=3.91;ReadPosRankSum=-2.034;SNPEFF_AMINO_ACID_CHANGE=H143;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17301764_17301837;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375534    GT:AD:DP:GQ:PL    0/1:9,3:12:76.86:77,0,295
1    17302835    rs115465875    G    A    238.96    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.847;QD=14.93;ReadPosRankSum=-0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:7,9:16:99:269,0,242
1    17303589    rs2235932    C    T    152.13    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=21.73;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CROCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375541    GT:AD:DP:GQ:PL    0/1:2,5:7:44.39:182,0,44
1    17312743    rs3170740    C    T    84.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=10;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=8.46;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=A1072T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17312453_17312853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341676    GT:AD:DP:GQ:PL    0/1:5,5:10:99:115,0,124
1    17313157    rs2076605    G    A    146    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=20.86;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503552    GT:AD:DP:GQ:PL    0/1:1,6:7:20.18:176,0,20
1    17313283    rs56146840    C    T    66.03    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.6;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503552    GT:AD:DP:GQ:PL    0/1:7,3:10:96.02:96,0,203
1    17313343    rs9435659    G    A    217.52    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=17;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=12.8;ReadPosRankSum=0.318;SNPEFF_AMINO_ACID_CHANGE=A1020;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17313300_17313451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341676    GT:AD:DP:GQ:PL    0/1:8,9:17:99:248,0,176
1    17313517    rs55885047    G    A    330    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.11;QD=11.38;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503552    GT:AD:DP:GQ:PL    0/1:16,13:29:99:360,0,410
1    17313654    rs761421    C    T    204.35    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.53;QD=12.77;ReadPosRankSum=-0.295;SNPEFF_AMINO_ACID_CHANGE=V186;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17313541_17313764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502418    GT:AD:DP:GQ:PL    0/1:7,9:16:99:234,0,193
1    17314942    rs9435662    G    A    830.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=64;Dels=0.0;FS=1.032;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=1.321;QD=12.98;ReadPosRankSum=-1.57;SNPEFF_AMINO_ACID_CHANGE=G75;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17314817_17314969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502418    GT:AD:DP:GQ:PL    0/1:36,28:64:99:861,0,1033
1    17319011    rs2076603    G    A    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=29.39;SNPEFF_AMINO_ACID_CHANGE=P600;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17318981_17319076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341676    GT:AD:DP:GQ:PL    1/1:1,109:110:99:3268,250,0
1    17323449    rs9435736    T    C    239.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511957    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:272,21,0
1    17331676    rs3738814    A    G    343.79    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.549;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.972;QD=18.09;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326735    GT:AD:DP:GQ:PL    0/1:7,12:19:99:374,0,237
1    17355387    rs2746469    T    C    238.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466613    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
1    17359676    rs1022580    C    A    735.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375499    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:768,57,0
1    17371152    rs12073028    T    C    325.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375499    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
1    17371494    rs9435745    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375499    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:73,0,30
1    17380497    rs2746462    G    T    118.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_AMINO_ACID_CHANGE=A6;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17380443_17380665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375499    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:151,12,0
1    17395480    rs2076599    G    A    346.47    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.443;DB;DP=28;Dels=0.0;FS=9.455;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.554;QD=12.37;ReadPosRankSum=1.308;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466151    GT:AD:DP:GQ:PL    0/1:17,11:28:99:376,0,375
1    17395521    rs2076598    G    A    495.47    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.337;DB;DP=37;Dels=0.0;FS=12.439;HRun=0;HaplotypeScore=0.734;MQ=58.11;MQ0=0;MQRankSum=-0.38;QD=13.39;ReadPosRankSum=-0.512;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466151    GT:AD:DP:GQ:PL    0/1:19,18:37:99:525,0,529
1    17396498    rs2076596    T    C    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.53;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375486    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,148
1    17396703    rs2076595    T    C    1048.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=74;Dels=0.0;FS=1.936;HRun=1;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=-0.303;QD=14.17;ReadPosRankSum=0.16;SNPEFF_AMINO_ACID_CHANGE=L432;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17396583_17396711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444885    GT:AD:DP:GQ:PL    0/1:37,37:74:99:1079,0,1157
1    17396876    rs2076594    C    A    110.59    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.29;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375486    GT:AD:DP:GQ:PL    0/1:5,4:9:99:141,0,100
1    17397704    rs2016693    A    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375486    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    17398066    rs875219    G    C    226.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375486    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:259,21,0
1    17398069    rs875218    T    C    178.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375486    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:212,18,0
1    17401137    rs2295051    T    C    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
1    17401283    rs3818041    C    T    521.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:555,42,0
1    17402116    rs3818035    G    T    1077.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.88;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,31:31:87.26:1111,87,0
1    17402135    rs3818034    T    C    1784.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.26;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1817,135,0
1    17402159    rs3818033    G    A    2313.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.02;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2346,178,0
1    17402255    rs3818032    C    T    2742.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=A342;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17402174_17402318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444885    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2776,211,0
1    17402347    rs2647205    C    T    1683.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=31.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1716,129,0
1    17402374    rs12732522    G    C    535.47    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.567;DB;DP=36;Dels=0.0;FS=2.127;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.257;QD=14.87;ReadPosRankSum=-0.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    0/1:15,21:36:99:565,0,525
1    17402418    rs3818031    A    G    954.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=38.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,25:25:75.23:987,75,0
1    17405809    rs2057096    G    A    2059.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=59.33;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=N304;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17405759_17405910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444885    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2093,159,0
1    17405916    rs2057095    C    T    1381.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1415,108,0
1    17405949    rs2057094    C    T    640.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=27.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:674,51,0
1    17406015    rs2057093    C    T    244.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:277,21,0
1    17406045    rs2057092    C    T    165.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
1    17410364    rs1883913    G    A    665.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:699,54,0
1    17418883    rs2647184    A    G    1026.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5774;MQ=58.59;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,33:33:81.24:1060,81,0
1    17418894    rs2273111    A    G    1173    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5774;MQ=58.63;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1206,93,0
1    17419066    rs11203298    T    C    404.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:437,33,0
1    17422192    rs2076610    G    A    170.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
1    17422226    rs2076609    C    T    342.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:375,27,0
1    17422302    rs2076608    T    C    1325.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.16;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1358,108,0
1    17422610    rs2235918    A    G    260.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:293,27,0
1    17422660    rs2076607    C    T    195.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:228,18,0
1    17431119    rs2746499    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
1    17431277    rs6701159    G    T    359.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:393,30,0
1    17431618    rs11203300    A    G    418.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=27.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:452,33,0
1    17431681    rs2647172    C    A    125.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375481    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
1    17520935    rs183737503    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-380J14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412427    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    17521098    rs2454177    G    C    121.82    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=17.4;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-380J14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412427    GT:AD:DP:GQ:PL    0/1:1,6:7:27.18:152,0,27
1    17531938    rs74058960    G    T    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375471    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,71
1    17548527    rs3003480    C    T    33.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375471    GT:AD:DP:GQ:PL    1/1:0,3:3:6:64,6,0
1    17549180    rs72646750    G    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375471    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    17550225    rs3003481    T    C    148.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375471    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
1    17551034    rs2293915    A    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375471    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    17552875    rs2977290    A    G    32.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483501    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:64,6,0
1    17555316    rs2977233    C    G    535.67    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.67;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.329;QD=12.46;ReadPosRankSum=-1.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483501    GT:AD:DP:GQ:PL    0/1:20,23:43:99:566,0,642
1    17555508    rs2977234    G    T    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.35;SNPEFF_AMINO_ACID_CHANGE=T297;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17555443_17555546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375471    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
1    17601419    rs2977297    C    G    133.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375460    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    17609448    rs2293920    G    T    288.96    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=17;Dels=0.0;FS=8.82;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=17.0;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=P623;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17609341_17610728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375460    GT:AD:DP:GQ:PL    0/1:8,9:17:99:319,0,254
1    17657534    rs11203366    G    A    660.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.981;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9559;MQ=59.44;MQ0=0;MQRankSum=-0.044;QD=16.1;ReadPosRankSum=-0.044;SNPEFF_AMINO_ACID_CHANGE=G55S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17657464_17657644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:15,25:41:99:690,0,346
1    17657616    rs11203367    T    C    589.04    PASS    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.675;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.5;QD=19.0;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=V82A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17657464_17657644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:9,22:31:99:619,0,285
1    17660499    rs874881    G    C    610.35    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.311;DB;DP=35;Dels=0.0;FS=1.391;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=17.44;ReadPosRankSum=-1.303;SNPEFF_AMINO_ACID_CHANGE=G112A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17660438_17660504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:12,23:35:99:640,0,400
1    17660660    rs874882    G    A    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:71,0,34
1    17661128    rs1555658    A    C    178.68    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.859;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.251;QD=10.51;ReadPosRankSum=0.754;SNPEFF_AMINO_ACID_CHANGE=L214;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17661117_17661291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:11,6:17:99:209,0,335
1    17662541    rs1748034    A    C    89.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    17662639    rs2240340    T    C    392.71    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.419;DB;DP=25;Dels=0.0;FS=8.846;HRun=1;HaplotypeScore=1.367;MQ=59.07;MQ0=0;MQRankSum=0.337;QD=15.71;ReadPosRankSum=-1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:8,17:25:99:423,0,277
1    17662662    rs1748033    T    C    474.19    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.826;DB;DP=24;Dels=0.0;FS=11.885;HRun=2;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;MQRankSum=1.08;QD=19.76;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L117;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17662654_17662721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375448    GT:AD:DP:GQ:PL    0/1:7,17:24:99:504,0,221
1    17662751    rs1621005    C    G    231.42    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=21;Dels=0.0;FS=2.172;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.412;QD=11.02;ReadPosRankSum=0.833;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:13,8:21:99:261,0,414
1    17662804    rs1748032    C    T    93.43    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=7.19;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:9,4:13:99:123,0,320
1    17664770    rs1635586    A    G    129.02    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=14;Dels=0.0;FS=4.472;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.22;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:9,5:14:99:159,0,328
1    17664813    rs1635585    T    G    36.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=4.59;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:4,4:8:66.74:67,0,126
1    17666095    rs1635578    T    C    449.98    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.137;DB;DP=42;Dels=0.0;FS=1.789;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=10.71;ReadPosRankSum=-0.142;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358829    GT:AD:DP:GQ:PL    0/1:26,16:42:99:480,0,774
1    17672730    rs2301888    G    A    32.46    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.64;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375448    GT:AD:DP:GQ:PL    0/1:5,2:7:62.45:62,0,178
1    17674402    rs2240336    C    T    367.59    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.232;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.363;QD=13.61;ReadPosRankSum=0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375448    GT:AD:DP:GQ:PL    0/1:11,16:27:99:398,0,374
1    17674537    rs2240335    C    A    389.98    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.945;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.138;QD=12.58;ReadPosRankSum=1.127;SNPEFF_AMINO_ACID_CHANGE=R383;SNPEFF_CODON_CHANGE=cgC/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17674436_17674543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375448    GT:AD:DP:GQ:PL    0/1:16,15:31:99:420,0,461
1    17681277    rs6683201    T    C    198.17    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=28.31;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375448    GT:AD:DP:GQ:PL    0/1:1,6:7:21.16:228,0,21
1    17681424    rs4920600    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375448    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    17685718    .    A    C    108.51    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DP=22;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=3.5191;MQ=41.46;MQ0=0;MQRankSum=-1.725;QD=4.93;ReadPosRankSum=1.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467001    GT:AD:DP:GQ:PL    0/1:12,10:22:99:138,0,191
1    17685724    .    A    C    36.60    QDFilter2    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.604;DP=25;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=4.518;MQ=44.1;MQ0=0;MQRankSum=-3.234;QD=1.46;ReadPosRankSum=1.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PADI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467001    GT:AD:DP:GQ:PL    0/1:13,12:25:66.59:67,0,212
1    17706607    rs61766771    C    G    353.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.096;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.66;MQ0=0;MQRankSum=-0.454;QD=17.69;ReadPosRankSum=-0.206;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:8,12:20:99:384,0,223
1    17707739    rs1204898    T    C    65.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=10.85;ReadPosRankSum=0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:3,3:6:95.09:95,0,102
1    17707798    rs10788668    C    T    37.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:68,0,33
1    17708349    rs7556072    G    A    633.13    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=46;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=13.76;ReadPosRankSum=0.078;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:20,26:46:99:663,0,643
1    17720391    rs6678552    G    A    656.87    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.741;DB;DP=50;Dels=0.0;FS=1.424;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.518;QD=13.14;ReadPosRankSum=-0.611;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:21,29:50:99:687,0,656
1    17720439    rs6695849    T    C    1165.19    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.331;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.92;MQ0=0;MQRankSum=0.344;QD=14.21;ReadPosRankSum=0.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:39,43:82:99:1195,0,1261
1    17720615    rs10458537    A    C    917.52    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.089;DB;DP=58;Dels=0.0;FS=4.865;HRun=2;HaplotypeScore=3.5043;MQ=59.07;MQ0=0;MQRankSum=0.626;QD=15.82;ReadPosRankSum=1.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:23,35:58:99:948,0,718
1    17720686    rs34075690    AG    A    316.27    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=3.324;DB;DP=38;FS=1.419;HRun=6;HaplotypeScore=131.8766;IndelType=D;MQ=59.19;MQ0=0;MQRankSum=0.095;QD=8.32;ReadPosRankSum=0.475;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:24,14:38:99:355,0,614
1    17721094    rs4920602    G    A    66.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.956;QD=7.4;ReadPosRankSum=-0.956;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:6,3:9:96.56:97,0,149
1    17721388    rs6691485    C    T    161.44    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.43;MQ0=0;MQRankSum=2.037;QD=14.68;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:4,7:11:99:191,0,104
1    17721695    rs35197313    GTTT    G    382.29    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=0.889;DB;DP=39;FS=0.0;HRun=15;HaplotypeScore=257.9697;IndelType=D;MQ=50.39;MQ0=0;MQRankSum=-1.838;QD=9.8;ReadPosRankSum=-0.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:27,9:39:99:421,0,618
1    17721721    rs147310450    TGA    T    235.73    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=1.969;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=209.4782;IndelType=D;MQ=48.54;MQ0=0;MQRankSum=-2.421;QD=7.86;ReadPosRankSum=1.259;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:22,8:30:99:275,0,701
1    17721844    rs2800692    A    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    17722363    rs7538876    G    A    73.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.29;ReadPosRankSum=-0.988;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,109
1    17723476    rs61476146    C    CCA    301.42    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=31.6772;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=0.678;QD=27.4;ReadPosRankSum=-0.278;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:4,7:11:99:340,0,132
1    17723739    rs12129196    G    A    181.76    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.666;QD=20.2;ReadPosRankSum=0.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:2,7:9:58.39:212,0,58
1    17725358    rs57383037    C    G    839.18    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=3.906;DB;DP=56;Dels=0.0;FS=10.2;HRun=1;HaplotypeScore=0.9867;MQ=58.42;MQ0=0;MQRankSum=0.346;QD=14.99;ReadPosRankSum=-0.396;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PADI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358481    GT:AD:DP:GQ:PL    0/1:25,31:56:99:869,0,637
1    17736578    rs2762890    A    G    174.66    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=14.56;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375433    GT:AD:DP:GQ:PL    0/1:5,7:12:99:205,0,178
1    17739586    rs942457    G    A    300.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.908;DB;DP=30;Dels=0.0;FS=3.352;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.155;QD=10.0;ReadPosRankSum=0.288;SNPEFF_AMINO_ACID_CHANGE=I432;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17739569_17739674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375433    GT:AD:DP:GQ:PL    0/1:18,12:30:99:330,0,543
1    17749459    rs5772758    C    CCAA    291.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=23.0113;IndelType=I;MQ=53.76;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375433    GT:AD:DP:GQ:PL    1/1:2,6:8:18.06:334,18,0
1    17752000    rs1324368    A    G    88.74    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=11.09;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375433    GT:AD:DP:GQ:PL    0/1:3,5:8:98.06:119,0,98
1    17914122    rs35497285    G    A    1559.84    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=98;Dels=0.0;FS=1.931;HRun=1;HaplotypeScore=1.7825;MQ=59.76;MQ0=0;MQRankSum=-0.969;QD=15.92;ReadPosRankSum=0.815;SNPEFF_AMINO_ACID_CHANGE=D69N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17913955_17914140;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361221    GT:AD:DP:GQ:PL    0/1:47,51:98:99:1590,0,1402
1    17914846    rs1193343    C    T    58.48    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.85;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361221    GT:AD:DP:GQ:PL    0/1:7,3:10:88.47:88,0,210
1    17929980    rs1193338    C    G    271.16    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.837;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=13.56;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361221    GT:AD:DP:GQ:PL    0/1:9,10:20:99:301,0,311
1    17960812    rs2354289    T    C    123.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167825    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
1    17961345    rs34725104    C    T    411.86    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.575;QD=24.23;ReadPosRankSum=0.693;SNPEFF_AMINO_ACID_CHANGE=I290;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17961330_17961511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000167825    GT:AD:DP:GQ:PL    0/1:3,14:17:81.38:442,0,81
1    17966846    rs61764910    G    A    78.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=13.06;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375420    GT:AD:DP:GQ:PL    0/1:2,4:6:56.03:108,0,56
1    17991052    rs6695710    T    C    373.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=24.91;SNPEFF_AMINO_ACID_CHANGE=W694R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_17990942_17991090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000167825    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:407,33,0
1    18021406    rs905389    T    C    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434513    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    18021867    rs2279816    T    C    155.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434513    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
1    18023261    rs61764942    G    A    221.76    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=20.16;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167825    GT:AD:DP:GQ:PL    0/1:4,7:11:97.32:252,0,97
1    18023290    rs2270979    C    T    529.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167825    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:563,42,0
1    18023365    rs2270978    C    T    840.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=N1071;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_18023343_18024144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375415    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:873,63,0
1    18023509    rs2270977    T    C    402.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_AMINO_ACID_CHANGE=D1119;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_18023343_18024144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375415    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:435,33,0
1    18023690    rs2270976    A    G    356.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.46;SNPEFF_AMINO_ACID_CHANGE=I1180V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_18023343_18024144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375415    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:389,33,0
1    18023997    rs11415130    G    GC    183.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=9.1261;IndelType=I;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457829    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
1    18554670    rs3738088    G    T    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251296    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    18691614    rs12079178    T    C    367.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251296    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
1    18691665    rs41300138    G    T    892.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251296    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:925,72,0
1    18702988    rs10796450    T    C    559.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=24.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251296    GT:AD:DP:GQ:PL    1/1:0,23:23:57.11:592,57,0
1    18703186    rs12127611    G    A    170.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251296    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
1    18703208    rs10796451    C    G    384.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251296    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:417,33,0
1    18703544    rs10465915    G    A    141.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=20.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473951    GT:AD:DP:GQ:PL    1/1:0,6:7:15.02:174,15,0
1    18703672    rs2271861    G    A    245.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473951    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
1    18704862    rs1043459    A    G    211.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473951    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
1    18704877    rs140452725    T    G    154.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=22.07;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473951    GT:AD:DP:GQ:PL    0/1:2,5:7:24.17:184,0,24
1    18807339    rs2992756    T    C    109.11    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=15.59;ReadPosRankSum=0.198;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400664    GT:AD:DP:GQ:PL    0/1:2,5:7:66.35:139,0,66
1    18807897    rs2992755    C    G    363.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=28;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.674;QD=13.0;ReadPosRankSum=-1.917;SNPEFF_AMINO_ACID_CHANGE=P141R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_18807424_18812478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400664    GT:AD:DP:GQ:PL    0/1:14,14:28:99:394,0,409
1    18807953    rs11261022    C    A    357.82    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=32;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=1.4105;MQ=58.55;MQ0=0;MQRankSum=0.227;QD=11.18;ReadPosRankSum=-1.397;SNPEFF_AMINO_ACID_CHANGE=R160S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_18807424_18812478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400664    GT:AD:DP:GQ:PL    0/1:17,15:32:99:388,0,453
1    18808292    rs2992753    C    A    1024.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.351;DB;DP=72;Dels=0.0;FS=14.791;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.305;QD=14.24;ReadPosRankSum=0.604;SNPEFF_AMINO_ACID_CHANGE=H210N;SNPEFF_CODON_CHANGE=Cat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_18807665_18809706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540290    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1055,0,995
1    18808465    rs3007718    T    A    148.52    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=19;Dels=0.0;FS=9.89;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.225;QD=7.82;ReadPosRankSum=-0.225;SNPEFF_AMINO_ACID_CHANGE=A267;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_18807665_18809706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540290    GT:AD:DP:GQ:PL    0/1:7,12:19:99:179,0,203
1    18808526    rs2992752    A    C    174.61    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=17;Dels=0.0;FS=7.911;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.537;QD=10.27;ReadPosRankSum=1.025;SNPEFF_AMINO_ACID_CHANGE=T288P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_18807665_18809706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540290    GT:AD:DP:GQ:PL    0/1:10,7:17:99:205,0,320
1    19027239    rs2743201    A    G    267.89    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.299;DB;DP=24;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=0.346;QD=11.16;ReadPosRankSum=-0.535;SNPEFF_AMINO_ACID_CHANGE=P291;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19027147_19027312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400661    GT:AD:DP:GQ:PL    0/1:14,10:24:99:298,0,350
1    19166294    rs12033832    G    A    953.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=S773;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19166093_19167021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375371    GT:AD:DP:GQ:PL    1/1:0,27:28:72.23:987,72,0
1    19168533    rs12082240    C    T    120.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375371    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
1    19181015    rs34447754    G    C    682.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=34.14;SNPEFF_AMINO_ACID_CHANGE=R317G;SNPEFF_CODON_CHANGE=Cgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19180707_19181480;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375371    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:716,54,0
1    19181082    rs28470550    A    C    660.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=T294;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19180707_19181480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375371    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:693,54,0
1    19181393    rs35874116    T    C    600.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=I191V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19180707_19181480;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375371    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:634,48,0
1    19184077    rs68081213    A    G    885.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=F77;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19183825_19184125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375371    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:918,72,0
1    19184176    rs72953138    G    A    302.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=27.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375371    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:335,27,0
1    19186129    rs9701796    G    C    1302.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=S9C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19185973_19186176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS1R2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375371    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1336,102,0
1    19199487    rs35255325    A    G    908.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290597    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:942,69,0
1    19200895    rs35657817    C    T    2139.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290597    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2173,160,0
1    19201184    rs6665917    G    C    269    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290597    GT:AD:DP:GQ:PL    1/1:0,12:12:27.07:302,27,0
1    19201211    rs35163726    T    TG    228.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=26.579;IndelType=I;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290597    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:270,18,0
1    19201956    rs2230708    A    G    1688.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.73;MQ0=0;QD=30.7;SNPEFF_AMINO_ACID_CHANGE=D400;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19201876_19201997;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538309    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1722,135,0
1    19202770    rs7550822    T    C    2020.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290597    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2053,156,0
1    19202896    rs2230707    G    A    635.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=54.79;MQ0=0;QD=26.48;SNPEFF_AMINO_ACID_CHANGE=A357;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19202809_19202961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538309    GT:AD:DP:GQ:PL    1/1:0,24:24:54.13:668,54,0
1    19202917    rs7550938    T    C    337.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=54.68;MQ0=0;QD=17.74;SNPEFF_AMINO_ACID_CHANGE=S350;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19202809_19202961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538309    GT:AD:DP:GQ:PL    1/1:0,19:19:38.99:370,39,0
1    19202926    rs2230706    T    C    234.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=14.64;SNPEFF_AMINO_ACID_CHANGE=A347;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19202809_19202961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538309    GT:AD:DP:GQ:PL    1/1:1,15:16:29.98:267,30,0
1    19203997    rs2230705    C    G    506.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=A290;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19203910_19204106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538309    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:540,42,0
1    19204154    rs6426813    G    A    213.36    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=19.4;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375334    GT:AD:DP:GQ:PL    0/1:4,7:11:99:243,0,130
1    19204173    rs6426814    A    G    236.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375334    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:269,21,0
1    19208145    rs112548638    G    GGGTTGCCT    3027.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=140.8904;IndelType=I;MQ=35.96;MQ0=0;QD=112.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375334    GT:AD:DP:GQ:PL    1/1:5,15:27:78.26:3070,78,0
1    19208944    rs28566028    A    G    1323.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=29.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375334    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1356,117,0
1    19209543    rs6426611    A    G    259.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432718    GT:AD:DP:GQ:PL    1/1:0,12:12:27.05:293,27,0
1    19238001    .    TTTTATTTA    T    347.46    PASS    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DP=34;FS=0.0;HRun=0;HaplotypeScore=245.438;IndelType=D;MQ=56.31;MQ0=0;MQRankSum=-1.568;QD=10.22;ReadPosRankSum=-1.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFFO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304963    GT:AD:DP:GQ:PL    0/1:28,6:34:99:386,0,312
1    19243589    rs3748586    A    G    352.97    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.763;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.2736;MQ=59.75;MQ0=0;MQRankSum=-0.925;QD=9.54;ReadPosRankSum=1.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFFO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304963    GT:AD:DP:GQ:PL    0/1:22,15:37:99:383,0,749
1    19401405    rs2281748    G    A    87.74    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=5.16;ReadPosRankSum=-0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:12,5:17:99:118,0,338
1    19411129    rs1043905    A    G    354    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=20;Dels=0.0;FS=4.481;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.27;QD=17.7;ReadPosRankSum=-0.964;SNPEFF_AMINO_ACID_CHANGE=H482;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19410998_19411192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429347    GT:AD:DP:GQ:PL    0/1:8,12:20:99:384,0,269
1    19412464    rs2274009    C    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    19413261    rs12584    T    A    563.43    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.402;QD=12.25;ReadPosRankSum=1.361;SNPEFF_AMINO_ACID_CHANGE=M390L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19413173_19413315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429347    GT:AD:DP:GQ:PL    0/1:27,19:46:99:593,0,751
1    19413420    rs2274008    T    G    49.71    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=58.11;MQ0=0;MQRankSum=-0.296;QD=4.97;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:7,3:10:79.70:80,0,264
1    19415304    rs1043899    C    T    396.44    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.068;DB;DP=43;Dels=0.0;FS=1.209;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-1.294;QD=9.22;ReadPosRankSum=0.741;SNPEFF_AMINO_ACID_CHANGE=K316;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19415253_19415471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429347    GT:AD:DP:GQ:PL    0/1:27,16:43:99:426,0,779
1    19420392    rs1106839    G    A    129.96    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.183;DB;DP=18;Dels=0.0;FS=5.563;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.69;QD=7.22;ReadPosRankSum=1.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467272    GT:AD:DP:GQ:PL    0/1:13,5:18:99:160,0,375
1    19423565    rs2296105    T    C    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
1    19426199    rs2236377    G    A    245.02    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.266;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=12.9;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:10,9:19:99:275,0,293
1    19431861    rs942180    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494503    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    19433449    rs6426677    A    G    344.88    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.523;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.339;QD=14.37;ReadPosRankSum=0.708;SNPEFF_AMINO_ACID_CHANGE=V4015;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19433331_19433460;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375226    GT:AD:DP:GQ:PL    0/1:13,11:24:99:375,0,387
1    19440107    rs9661719    A    G    918.12    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.419;DB;DP=59;Dels=0.0;FS=1.314;HRun=1;HaplotypeScore=1.7074;MQ=59.29;MQ0=0;MQRankSum=0.751;QD=15.56;ReadPosRankSum=-0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:28,31:59:99:948,0,759
1    19441212    rs2274003    A    G    458.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=13.49;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:17,17:34:99:489,0,578
1    19441594    rs56030256    C    G    138.66    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.41;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,132
1    19444552    rs17392444    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417040    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    19446388    rs2296104    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417040    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
1    19447498    rs6426678    T    C    163    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=27.17;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417040    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:193,0,25
1    19447752    rs78347051    G    T    43.68    QDFilter2    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.172;DB;DP=42;Dels=0.0;FS=54.893;HRun=2;HaplotypeScore=1.9652;MQ=53.31;MQ0=0;MQRankSum=-1.323;QD=1.02;ReadPosRankSum=-0.651;SNPEFF_AMINO_ACID_CHANGE=Q2044K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19447707_19447928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417040    GT:AD:DP:GQ:PL    0/1:27,15:42:73.68:74,0,863
1    19447819    rs35802543    T    C    429.64    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.016;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=53.9;MQ0=0;MQRankSum=-0.187;QD=13.86;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=A2021;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19447707_19447928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417040    GT:AD:DP:GQ:PL    0/1:14,17:31:99:460,0,451
1    19447843    rs1044010    C    G    618.54    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=2.407;DB;DP=39;Dels=0.0;FS=1.328;HRun=0;HaplotypeScore=0.0;MQ=55.72;MQ0=0;MQRankSum=0.77;QD=15.86;ReadPosRankSum=0.706;SNPEFF_AMINO_ACID_CHANGE=L2013;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19447707_19447928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417040    GT:AD:DP:GQ:PL    0/1:17,22:39:99:649,0,373
1    19448608    rs7535738    C    G    180.86    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=13.91;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475973    GT:AD:DP:GQ:PL    0/1:7,6:13:99:211,0,231
1    19450938    rs6681943    G    A    114.81    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=10.44;ReadPosRankSum=1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475973    GT:AD:DP:GQ:PL    0/1:6,5:11:99:145,0,207
1    19464773    rs2274001    C    T    347.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.816;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.039;QD=17.37;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:8,12:20:99:377,0,271
1    19474975    rs2296108    T    G    911.74    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=61;Dels=0.0;FS=3.323;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.365;QD=14.95;ReadPosRankSum=-0.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419533    GT:AD:DP:GQ:PL    0/1:29,32:61:99:942,0,926
1    19483209    rs10799710    A    G    859.51    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.662;DB;DP=73;Dels=0.0;FS=5.246;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=11.77;ReadPosRankSum=-1.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:40,33:73:99:890,0,1201
1    19486839    rs946419    T    C    64.40    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=12.88;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:1,4:5:25.76:94,0,26
1    19487656    rs3748759    T    C    211.96    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.122;QD=11.16;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:10,9:19:99:242,0,321
1    19488493    rs3748758    A    C    248.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=20.73;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:4,8:12:99:279,0,119
1    19488839    rs1999967    C    A    293.44    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=2.27;DB;DP=29;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;MQRankSum=-0.292;QD=10.12;ReadPosRankSum=1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:18,11:29:99:323,0,616
1    19489275    rs10799715    G    A    32.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.74;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:1,2:3:33.21:62,0,33
1    19491514    rs12133185    G    C    244.46    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.912;DB;DP=25;Dels=0.0;FS=4.224;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.082;QD=9.78;ReadPosRankSum=1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:15,10:25:99:274,0,502
1    19491857    rs3748757    T    C    1695.68    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.829;DB;DP=133;Dels=0.0;FS=10.836;HRun=0;HaplotypeScore=0.7887;MQ=59.86;MQ0=0;MQRankSum=-0.029;QD=12.75;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:66,67:133:99:1726,0,1974
1    19493394    rs11379504    T    TA    217.60    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.274;DB;DP=21;FS=0.0;HRun=10;HaplotypeScore=43.2752;IndelType=I;MQ=61.02;MQ0=0;MQRankSum=1.091;QD=10.36;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:11,10:21:99:257,0,208
1    19499835    rs951908    G    C    354.04    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=29;Dels=0.0;FS=1.631;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.162;QD=12.21;ReadPosRankSum=1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:16,13:29:99:384,0,511
1    19499873    rs952789    G    T    233.46    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.817;DB;DP=19;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=12.29;ReadPosRankSum=-1.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:10,9:19:99:263,0,372
1    19499954    rs952790    G    A    288.82    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=21;Dels=0.0;FS=7.025;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=13.75;ReadPosRankSum=-0.458;SNPEFF_AMINO_ACID_CHANGE=S1048;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19499933_19500115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:10,11:21:99:319,0,321
1    19500729    rs6694521    G    A    256.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.865;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=18.32;ReadPosRankSum=-1.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:6,8:14:99:286,0,208
1    19504306    rs12138892    C    G    220.48    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=20.04;ReadPosRankSum=-0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:3,8:11:94.43:250,0,94
1    19510394    rs3762396    A    G    834.92    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.648;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.39;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:20,28:48:99:865,0,630
1    19518659    rs11588032    G    A    1152.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.593;DB;DP=80;Dels=0.0;FS=3.574;HRun=2;HaplotypeScore=2.9238;MQ=59.77;MQ0=0;MQRankSum=0.755;QD=14.4;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1182,0,1256
1    19519782    rs10799734    C    T    227.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.119;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.265;QD=12.63;ReadPosRankSum=-0.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:9,9:18:99:257,0,322
1    19526363    rs12122656    A    G    50.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.26;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375217    GT:AD:DP:GQ:PL    0/1:4,3:7:80.84:81,0,149
1    19549759    rs710870    G    A    716.35    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=5.239;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.242;QD=17.91;ReadPosRankSum=1.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375199    GT:AD:DP:GQ:PL    0/1:17,23:40:99:746,0,455
1    19554099    rs7515397    T    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375199    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:72,0,70
1    19557281    rs12128595    G    C    2148.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.639;DB;DP=172;Dels=0.0;FS=3.87;HRun=2;HaplotypeScore=3.7718;MQ=59.6;MQ0=0;MQRankSum=1.698;QD=12.49;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375199    GT:AD:DP:GQ:PL    0/1:86,86:172:99:2178,0,2516
1    19557713    rs2275403    G    C    1568.70    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.974;DB;DP=118;Dels=0.0;FS=7.457;HRun=2;HaplotypeScore=1.933;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=13.29;ReadPosRankSum=0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375199    GT:AD:DP:GQ:PL    0/1:57,61:118:99:1599,0,1574
1    19559729    rs16862625    A    G    145.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=14.52;ReadPosRankSum=1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375199    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,170
1    19563900    rs16862632    T    G    42.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.17;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467423    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
1    19565175    rs709681    T    C    260.66    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.511;DB;DP=19;Dels=0.0;FS=3.245;HRun=2;HaplotypeScore=0.6651;MQ=58.78;MQ0=0;MQRankSum=0.041;QD=13.72;ReadPosRankSum=-0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475079    GT:AD:DP:GQ:PL    0/1:10,9:19:99:291,0,350
1    19565338    rs709682    C    T    961.68    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.098;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6316;MQ=59.65;MQ0=0;MQRankSum=-0.873;QD=14.8;ReadPosRankSum=-1.673;SNPEFF_AMINO_ACID_CHANGE=S325N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19565289_19565351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375208    GT:AD:DP:GQ:PL    0/1:33,32:65:99:992,0,990
1    19565344    rs709683    C    G    900.24    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.558;DB;DP=63;Dels=0.0;FS=2.394;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=14.29;ReadPosRankSum=-0.724;SNPEFF_AMINO_ACID_CHANGE=S323T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19565289_19565351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375208    GT:AD:DP:GQ:PL    0/1:34,29:63:99:930,0,1011
1    19566627    rs710869    A    G    58.44    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=3.233;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.84;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356068    GT:AD:DP:GQ:PL    0/1:7,3:10:88.44:88,0,256
1    19568722    rs710866    G    C    76.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.69;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356068    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,108
1    19568972    rs710865    A    G    1090.40    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=2.414;DB;DP=62;Dels=0.0;FS=4.098;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=1.085;QD=17.59;ReadPosRankSum=1.262;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356068    GT:AD:DP:GQ:PL    0/1:24,38:62:99:1120,0,570
1    19570426    rs2294944    C    G    435.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=14.5;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356068    GT:AD:DP:GQ:PL    0/1:15,15:30:99:465,0,511
1    19578192    rs2294942    G    A    34.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=8.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0090;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356068    GT:AD:DP:GQ:PL    0/1:2,2:4:51.02:65,0,51
1    19581226    rs735026    G    A    445.95    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8899;MQ=58.63;MQ0=0;MQRankSum=0.962;QD=13.12;ReadPosRankSum=0.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330263    GT:AD:DP:GQ:PL    0/1:20,14:34:99:476,0,650
1    19581467    rs1774081    C    T    63.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.55;QD=9.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330263    GT:AD:DP:GQ:PL    0/1:4,3:7:93.02:93,0,132
1    19582563    rs1557133    G    A    909.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493700    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:942,72,0
1    19583330    rs2073102    G    C    194.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=21.64;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493700    GT:AD:DP:GQ:PL    0/1:3,6:9:49.03:225,0,49
1    19583400    rs1774075    A    G    1051.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493700    GT:AD:DP:GQ:PL    1/1:0,36:36:93.25:1084,93,0
1    19583684    rs1774074    C    T    1000.75    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=5.404;DB;DP=91;Dels=0.0;FS=10.523;HRun=1;HaplotypeScore=0.9832;MQ=58.46;MQ0=0;MQRankSum=-1.329;QD=11.0;ReadPosRankSum=0.089;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493700    GT:AD:DP:GQ:PL    0/1:50,41:91:99:1031,0,1525
1    19583725    rs1738017    T    C    380.46    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DB;DP=49;Dels=0.0;FS=4.732;HRun=0;HaplotypeScore=2.3654;MQ=57.12;MQ0=0;MQRankSum=-0.342;QD=7.76;ReadPosRankSum=-1.006;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493700    GT:AD:DP:GQ:PL    0/1:31,18:49:99:410,0,1032
1    19583734    rs4912057    G    A    703.27    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.477;DB;DP=34;Dels=0.0;FS=4.638;HRun=0;HaplotypeScore=0.9983;MQ=58.63;MQ0=0;MQRankSum=-0.019;QD=20.68;ReadPosRankSum=0.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493700    GT:AD:DP:GQ:PL    0/1:11,23:34:99:733,0,358
1    19584004    rs1042380    G    A    1115.89    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=83;Dels=0.0;FS=2.028;HRun=1;HaplotypeScore=0.9995;MQ=59.44;MQ0=0;MQRankSum=0.478;QD=13.44;ReadPosRankSum=1.044;SNPEFF_AMINO_ACID_CHANGE=E110;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19583948_19584015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330263    GT:AD:DP:GQ:PL    0/1:40,43:83:99:1146,0,1218
1    19584578    rs12121472    T    C    73.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.46;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493700    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,109
1    19585207    rs2294939    G    A    732.91    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.645;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=0.344;QD=10.32;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=K201;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19585175_19586622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRTO4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330263    GT:AD:DP:GQ:PL    0/1:38,33:71:99:763,0,1101
1    19595137    rs2235795    C    T    478.57    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=44;Dels=0.0;FS=9.155;HRun=0;HaplotypeScore=0.9894;MQ=58.41;MQ0=0;MQRankSum=-0.076;QD=10.88;ReadPosRankSum=-0.606;SNPEFF_AMINO_ACID_CHANGE=A220T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19595066_19595195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388886    GT:AD:DP:GQ:PL    0/1:25,19:44:99:509,0,699
1    19595892    rs6665423    G    A    875.32    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=53;Dels=0.0;FS=6.325;HRun=0;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=1.341;QD=16.52;ReadPosRankSum=-0.357;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483106    GT:AD:DP:GQ:PL    0/1:21,32:53:99:905,0,515
1    19596124    rs2235794    C    T    586.54    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.514;DB;DP=44;Dels=0.0;FS=7.988;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.175;QD=13.33;ReadPosRankSum=-0.117;SNPEFF_AMINO_ACID_CHANGE=C151Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19596077_19596173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388886    GT:AD:DP:GQ:PL    0/1:21,23:44:99:617,0,615
1    19596156    rs6665756    G    T    372.33    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.82;DB;DP=34;Dels=0.0;FS=9.238;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.075;QD=10.95;ReadPosRankSum=0.492;SNPEFF_AMINO_ACID_CHANGE=T140;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19596077_19596173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388886    GT:AD:DP:GQ:PL    0/1:19,15:34:99:402,0,586
1    19596841    rs7536049    G    A    348.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.95;MQ0=0;QD=24.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493176    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:381,30,0
1    19597420    rs12046875    G    T    742.04    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=65;Dels=0.0;FS=2.341;HRun=0;HaplotypeScore=0.9947;MQ=58.19;MQ0=0;MQRankSum=-0.021;QD=11.42;ReadPosRankSum=0.7;SNPEFF_AMINO_ACID_CHANGE=A75D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19597242_19597429;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388886    GT:AD:DP:GQ:PL    0/1:41,24:65:99:772,0,1210
1    19609254    rs1738025    T    C    716.60    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.155;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1877;MQ=49.84;MQ0=0;MQRankSum=-0.753;QD=13.03;ReadPosRankSum=-0.061;SNPEFF_AMINO_ACID_CHANGE=T323A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19609052_19609386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361640    GT:AD:DP:GQ:PL    0/1:26,29:55:99:747,0,753
1    19609437    rs12070508    T    C    99.67    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.175;DB;DP=31;Dels=0.0;FS=9.054;HRun=1;HaplotypeScore=0.0;MQ=39.35;MQ0=5;MQRankSum=-3.291;QD=3.22;ReadPosRankSum=-2.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361640    GT:AD:DP:GQ:PL    0/1:18,13:31:99:130,0,556
1    19611241    rs1738023    T    C    1669.32    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.865;DB;DP=112;Dels=0.0;FS=0.713;HRun=1;HaplotypeScore=1.6809;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=14.9;ReadPosRankSum=0.521;SNPEFF_AMINO_ACID_CHANGE=N215D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19611180_19611279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361640    GT:AD:DP:GQ:PL    0/1:52,60:112:99:1699,0,1439
1    19611410    rs1968022    C    G    1342.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.62;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361640    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1375,102,0
1    19611487    rs59348345    A    T    529.81    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=-2.758;QD=7.26;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361640    GT:AD:DP:GQ:PL    0/1:50,23:73:99:560,0,1406
1    19612249    rs9660883    G    A    236.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.86;MQ0=2;QD=23.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361640    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:269,21,0
1    19632757    rs2231204    C    T    157.39    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=26.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492217    GT:AD:DP:GQ:PL    0/1:1,5:6:17.19:187,0,17
1    19638309    rs2227295    A    G    332.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235835    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:366,30,0
1    19650982    rs41264065    C    T    172.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
1    19651102    rs41264067    A    G    1171.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:1,39:40:96.29:1204,96,0
1    19651277    rs41264069    G    A    540.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:574,45,0
1    19651300    rs41264071    T    C    322.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
1    19651330    rs41264073    C    T    190.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:224,18,0
1    19651385    rs214314    G    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    19652063    rs11558390    G    A    948.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=T123;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_19651989_19652076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:982,78,0
1    19652128    rs113123686    GT    G    278.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=160.8629;IndelType=D;MQ=53.0;MQ0=0;QD=17.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:7,9:16:38.63:321,39,0
1    19652642    rs41264075    A    C    406.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:440,33,0
1    19652684    rs41264077    G    C    412.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,17:17:36.10:446,36,0
1    19653256    rs7553611    A    G    364.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,12:12:30.07:398,30,0
1    19653309    rs7540401    G    A    69.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375153    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:102,9,0
1    19669117    rs214326    A    G    197.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPZB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264202    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
1    19669618    rs72651461    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPZB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413711    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    19775566    rs1546264    G    A    61.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=10.25;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPZB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264202    GT:AD:DP:GQ:PL    0/1:3,3:6:91.49:91,0,106
1    19981451    rs3828101    A    G    93.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289749    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    19981791    rs2294630    A    G    1127.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289749    GT:AD:DP:GQ:PL    1/1:0,37:37:96.28:1161,96,0
1    19992066    rs10917509    T    C    87.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.219;QD=9.75;ReadPosRankSum=-0.361;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_19991780_19992960;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289753    GT:AD:DP:GQ:PL    0/1:5,4:9:99:118,0,181
1    20005345    rs115124268    T    C    387.78    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=58.67;MQ0=0;MQRankSum=1.519;QD=11.08;ReadPosRankSum=-0.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294543    GT:AD:DP:GQ:PL    0/1:22,13:35:99:418,0,701
1    20005822    rs8192534    C    T    136.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=10.5;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=P428;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20005412_20006055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289753    GT:AD:DP:GQ:PL    0/1:6,6:13:99:167,0,163
1    20020993    rs4370779    A    G    1870.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.05;MQ0=0;QD=25.62;SNPEFF_AMINO_ACID_CHANGE=R438;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20020927_20021044;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375122    GT:AD:DP:GQ:PL    1/1:0,72:72:99:1903,168,0
1    20020994    rs4515815    C    T    698.53    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.164;DB;DP=70;Dels=0.0;FS=2.188;HRun=0;HaplotypeScore=0.7887;MQ=59.01;MQ0=0;MQRankSum=0.309;QD=9.98;ReadPosRankSum=1.517;SNPEFF_AMINO_ACID_CHANGE=R438H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20020927_20021044;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375122    GT:AD:DP:GQ:PL    0/1:32,37:70:99:729,0,907
1    20066178    rs11802745    C    G    435.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294543    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:468,36,0
1    20071797    rs111478619    G    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462171    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    20097611    rs1266436    G    A    217.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488449    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
1    20141283    rs1541184    C    T    530.26    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.26;QD=17.11;ReadPosRankSum=0.46;SNPEFF_AMINO_ACID_CHANGE=A104;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20140523_20141771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF186;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375121    GT:AD:DP:GQ:PL    0/1:13,18:31:99:560,0,392
1    20141528    rs1541185    C    T    342.02    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.365;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=21.38;ReadPosRankSum=0.182;SNPEFF_AMINO_ACID_CHANGE=A23T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20140523_20141771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF186;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375121    GT:AD:DP:GQ:PL    0/1:4,12:16:99:372,0,103
1    20216860    rs10799593    G    A    685.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.585;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.618;QD=12.7;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375120    GT:AD:DP:GQ:PL    0/1:30,24:54:99:716,0,855
1    20246876    rs61729970    C    T    354.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.315;QD=16.86;ReadPosRankSum=-0.817;SNPEFF_AMINO_ACID_CHANGE=R118H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20246502_20246942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375116    GT:AD:DP:GQ:PL    0/1:9,12:21:99:384,0,225
1    20248646    rs1108972    G    A    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375116    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    20248651    rs1108973    A    G    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375116    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    20248709    rs1108974    A    G    190.92    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=11.23;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375116    GT:AD:DP:GQ:PL    0/1:9,8:17:99:221,0,273
1    20305065    rs10732279    C    T    659.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375111    GT:AD:DP:GQ:PL    1/1:0,22:22:54.15:692,54,0
1    20411300    rs150400843    GT    G    418.60    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=3.782;DB;DP=62;FS=4.216;HRun=9;HaplotypeScore=164.621;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=1.277;QD=6.75;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2G5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375108    GT:AD:DP:GQ:PL    0/1:39,23:62:99:458,0,1004
1    20416878    rs565503    C    G    202.94    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=22.55;ReadPosRankSum=-1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2G5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460175    GT:AD:DP:GQ:PL    0/1:2,7:9:56.81:233,0,57
1    20442054    rs584367    T    C    404.60    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.508;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.36;MQ0=0;MQRankSum=-2.022;QD=11.24;ReadPosRankSum=2.118;SNPEFF_AMINO_ACID_CHANGE=S80G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20442000_20442106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375105    GT:AD:DP:GQ:PL    0/1:21,15:36:99:435,0,728
1    20466830    rs12065685    T    C    60.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.75;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375102    GT:AD:DP:GQ:PL    0/1:6,3:9:90.71:91,0,225
1    20474907    rs3738126    T    C    145.79    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=22;Dels=0.0;FS=5.367;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.553;QD=6.63;ReadPosRankSum=0.774;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465062    GT:AD:DP:GQ:PL    0/1:16,6:22:99:176,0,491
1    20490518    rs6426616    T    C    382.77    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=27;Dels=0.0;FS=3.473;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=14.18;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=Q139R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20487746_20490650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429261    GT:AD:DP:GQ:PL    0/1:13,14:27:99:413,0,356
1    20499168    rs2301475    T    C    155.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=22.28;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247992    GT:AD:DP:GQ:PL    0/1:2,5:7:61.34:186,0,61
1    20501362    rs6692902    C    T    138.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.33;MQ0=0;MQRankSum=-1.369;QD=9.92;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247992    GT:AD:DP:GQ:PL    0/1:7,7:14:99:169,0,245
1    20501582    rs12139100    G    A    1640.95    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=1.918;DB;DP=134;Dels=0.0;FS=4.524;HRun=0;HaplotypeScore=0.6651;MQ=59.69;MQ0=0;MQRankSum=0.803;QD=12.25;ReadPosRankSum=1.445;SNPEFF_AMINO_ACID_CHANGE=R33*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_20501500_20501638;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G2C;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000429261    GT:AD:DP:GQ:PL    0/1:71,63:134:99:1671,0,1810
1    20637043    rs12726937    C    T    319.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.264;QD=17.76;ReadPosRankSum=1.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    0/1:6,12:18:99:350,0,199
1    20637374    rs10916761    T    C    79.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
1    20649814    rs4655194    T    C    1683.05    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=95;Dels=0.0;FS=3.329;HRun=3;HaplotypeScore=1.6828;MQ=59.19;MQ0=0;MQRankSum=-0.636;QD=17.72;ReadPosRankSum=-1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    0/1:38,56:95:99:1713,0,1237
1    20656824    rs2072752    A    G    68.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.56;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=N186S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20656673_20656875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289825    GT:AD:DP:GQ:PL    0/1:6,3:9:98.02:98,0,179
1    20657352    rs2072753    T    C    635.58    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.19;DB;DP=62;Dels=0.0;FS=0.975;HRun=3;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-1.046;QD=10.25;ReadPosRankSum=-0.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    0/1:32,30:62:99:666,0,1006
1    20662938    rs10916769    A    G    185.90    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=16.9;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=K351R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20662796_20662979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289825    GT:AD:DP:GQ:PL    0/1:3,8:11:96.10:216,0,96
1    20663985    rs145615239    G    A    39.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    0/1:1,3:4:23.47:69,0,23
1    20671807    rs61770716    T    C    225.72    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=20.52;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    0/1:4,7:11:99:256,0,133
1    20671833    rs10799629    C    A    206.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.98;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=2.339;QD=14.77;ReadPosRankSum=-0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    0/1:7,7:14:99:237,0,248
1    20671961    rs11582960    G    A    502.37    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.487;DB;DP=31;Dels=0.0;FS=3.482;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.318;QD=16.21;ReadPosRankSum=0.699;SNPEFF_AMINO_ACID_CHANGE=R880H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20671949_20672086;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    0/1:13,18:31:99:532,0,323
1    20672101    rs4655200    C    T    81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.2;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA5B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289815    GT:AD:DP:GQ:PL    0/1:2,3:5:18.55:111,0,19
1    20931279    rs111333323    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375071    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    20940258    rs488991    T    A    700.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375071    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:733,54,0
1    20960230    rs45530340    C    T    81.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.31;SNPEFF_AMINO_ACID_CHANGE=L63;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20959948_20960428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321556    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
1    20964328    rs2298298    A    G    983.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.702;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.234;QD=26.57;ReadPosRankSum=-0.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321556    GT:AD:DP:GQ:PL    1/1:1,36:37:46.61:1016,47,0
1    20971875    rs3131712    G    A    42.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321556    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:73,0,22
1    20972048    rs3131713    G    A    364.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321556    GT:AD:DP:GQ:PL    1/1:0,14:15:33.07:398,33,0
1    20972340    rs3131714    G    A    148.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=24.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321556    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:182,15,0
1    20972373    rs141853877    CG    C    138.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=90.9167;IndelType=D;MQ=44.1;MQ0=0;QD=27.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321556    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:180,15,0
1    20977221    rs686658    A    T    542.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDOST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375048    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:576,42,0
1    20978832    rs6893    T    C    266.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDOST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464364    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:300,24,0
1    20979307    rs34089130    G    GT    1968.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=3;HaplotypeScore=92.3453;IndelType=I;MQ=60.66;MQ0=0;QD=40.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDOST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464364    GT:AD:DP:GQ:PL    1/1:1,48:49:99:2011,144,0
1    20981806    rs592851    G    A    436    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDOST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464364    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:469,36,0
1    20987873    rs537816    G    C    674.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5449;MQ=58.99;MQ0=0;QD=29.33;SNPEFF_AMINO_ACID_CHANGE=R8G;SNPEFF_CODON_CHANGE=Cgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20987690_20988000;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDOST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375048    GT:AD:DP:GQ:PL    1/1:0,23:23:51.17:707,51,0
1    20991273    rs56070322    G    A    295.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462858    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:328,24,0
1    20992819    rs631357    G    C    2041.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_AMINO_ACID_CHANGE=D314E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_20992707_20992824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321188    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2075,162,0
1    20992933    rs573268    G    C    525.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498225    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:559,45,0
1    21024743    rs521424    G    A    37.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.29;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247986    GT:AD:DP:GQ:PL    0/1:2,2:4:67.17:67,0,69
1    21024901    rs522496    C    T    286.46    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=27;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=10.61;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=V302M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21024872_21024981;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375044    GT:AD:DP:GQ:PL    0/1:16,11:27:99:316,0,490
1    21030902    rs900039    G    T    75.78    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247986    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:106,0,30
1    21031042    rs2296225    T    C    522.29    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=33;Dels=0.0;FS=9.756;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=15.83;ReadPosRankSum=-0.415;SNPEFF_AMINO_ACID_CHANGE=I241V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21030940_21031392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375044    GT:AD:DP:GQ:PL    0/1:16,17:33:99:552,0,472
1    21040079    rs10799661    C    A    492.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.45;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247986    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:525,39,0
1    21040088    rs41307866    C    T    138.08    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=58.33;MQ0=0;MQRankSum=0.71;QD=9.86;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247986    GT:AD:DP:GQ:PL    0/1:8,6:14:99:168,0,216
1    21043790    rs519209    T    C    33.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375031    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
1    21043913    rs604659    T    C    510.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375031    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:544,42,0
1    21043926    rs604645    T    C    456.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=26.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375031    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:489,39,0
1    21044161    rs601329    A    G    396.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_AMINO_ACID_CHANGE=R13;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21043969_21044510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247986    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:429,33,0
1    21044219    rs601392    A    C    288.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_21043969_21044510;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247986    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:322,24,0
1    21050958    rs592060    C    T    862.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.82;SNPEFF_AMINO_ACID_CHANGE=Q103;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21050889_21051128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375031    GT:AD:DP:GQ:PL    1/1:0,27:28:66.21:896,66,0
1    21054726    rs646786    A    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375031    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    21097727    rs3736880    G    A    210.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375000    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
1    21097783    rs651085    G    A    80.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375000    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
1    21099846    rs589755    A    G    463.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375000    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:496,36,0
1    21143774    rs12126757    A    T    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264211    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    21167404    rs7553394    A    G    2267.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_AMINO_ACID_CHANGE=L1000;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21167349_21167521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374935    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2300,172,0
1    21175855    rs7525082    C    A    1473.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264211    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1507,111,0
1    21179969    rs7542882    G    A    344.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264211    GT:AD:DP:GQ:PL    1/1:0,13:13:27.09:378,27,0
1    21188871    rs17409373    C    A    1129.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264211    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1162,90,0
1    21295864    rs2271115    C    T    887.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=35.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411888    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:921,69,0
1    21325360    rs885363    C    A    400.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264211    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:434,33,0
1    21327637    rs1395508    C    T    2069.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264211    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2103,154,0
1    21328960    rs78042703    A    G    93.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.63;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264211    GT:AD:DP:GQ:PL    0/1:2,4:6:53.34:124,0,53
1    21377314    rs6426663    C    T    390.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264211    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:424,33,0
1    21494634    rs61779121    C    T    249.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400415    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
1    21551550    rs2038090    A    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264205    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    21560253    rs28368029    G    C    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528294    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    21571601    rs12562197    G    A    1054.54    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=1.648;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.81;MQ0=0;MQRankSum=-0.435;QD=19.17;ReadPosRankSum=0.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264205    GT:AD:DP:GQ:PL    0/1:19,36:55:99:1085,0,595
1    21573722    rs2229450    G    A    749.71    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.075;QD=20.83;ReadPosRankSum=-0.626;SNPEFF_AMINO_ACID_CHANGE=T369;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21573714_21573856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415912    GT:AD:DP:GQ:PL    0/1:13,23:36:99:780,0,372
1    21582348    rs2076282    T    C    142.71    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=27;Dels=0.0;FS=3.385;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.138;QD=5.29;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473505    GT:AD:DP:GQ:PL    0/1:20,7:27:99:173,0,755
1    21583925    rs2076280    C    T    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.15;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473505    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:67,0,73
1    21583973    rs3026879    A    G    36.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=4.0;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473505    GT:AD:DP:GQ:PL    0/1:5,4:9:66.02:66,0,153
1    21738020    rs2316499    A    G    1654.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=54.69;MQ0=0;QD=33.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-293F5.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443127    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1687,132,0
1    21750970    rs149361209    T    A    105.60    MQFilter40    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=34;Dels=0.0;FS=4.337;HRun=1;HaplotypeScore=0.9734;MQ=20.32;MQ0=11;MQRankSum=-0.409;QD=3.11;ReadPosRankSum=-2.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    0/1:19,15:34:99:136,0,300
1    21751068    rs71512975    C    G    783.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.73;MQ0=63;QD=6.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    1/1:0,122:122:90.05:817,90,0
1    21751116    .    G    C    693.62    MQFilter40    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=0.089;DP=180;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=14.6;MQ0=83;MQRankSum=0.126;QD=3.85;ReadPosRankSum=0.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    0/1:83,97:180:99:724,0,379
1    21751142    rs150916531    A    G    791.89    MQFilter40    AB=0.445;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=182;Dels=0.0;FS=5.431;HRun=2;HaplotypeScore=0.0;MQ=14.95;MQ0=81;MQRankSum=1.295;QD=4.35;ReadPosRankSum=0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    0/1:81,101:182:99:822,0,347
1    21751214    rs72476501    G    A    2848.07    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.136;DB;DP=234;Dels=0.0;FS=4.943;HRun=0;HaplotypeScore=2.6383;MQ=33.38;MQ0=16;MQRankSum=4.516;QD=12.12;ReadPosRankSum=0.251;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    0/1:104,130:234:99:2878,0,1980
1    21752682    rs71512992    G    A    1647.31    MQFilter40    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=7.423;DB;DP=167;Dels=0.0;FS=21.614;HRun=0;HaplotypeScore=0.0;MQ=30.15;MQ0=2;MQRankSum=-1.692;QD=9.86;ReadPosRankSum=0.282;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    0/1:83,84:167:99:1677,0,1771
1    21752746    rs140646278    G    A    2412.58    MQFilter40    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.506;DB;DP=249;DS;Dels=0.0;FS=4.085;HRun=4;HaplotypeScore=1.6281;MQ=28.98;MQ0=12;MQRankSum=0.072;QD=9.69;ReadPosRankSum=-0.431;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    0/1:114,134:249:99:2443,0,2143
1    21752766    rs144829292    A    G    1339.48    MQFilter40    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.619;DB;DP=223;DS;Dels=0.0;FS=0.603;HRun=0;HaplotypeScore=3.3597;MQ=26.79;MQ0=20;MQRankSum=0.92;QD=6.01;ReadPosRankSum=-1.513;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    0/1:132,91:223:99:1369,0,2393
1    21752782    rs140348908    T    G    962.16    MQFilter40    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=3.347;DB;DP=208;DS;Dels=0.0;FS=2.288;HRun=0;HaplotypeScore=0.5784;MQ=24.96;MQ0=23;MQRankSum=0.268;QD=4.63;ReadPosRankSum=-2.687;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    0/1:127,81:208:99:992,0,2074
1    21753562    rs146549873    A    C    4581.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3572;MQ=33.19;MQ0=7;QD=25.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    1/1:1,182:183:99:4582,361,0
1    21753715    rs7364712    T    C    943.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.09;MQ0=22;QD=15.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    1/1:0,61:61:87.24:977,87,0
1    21754283    rs6426689    A    C    8180.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3113;MQ=50.36;MQ0=3;QD=32.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426482    GT:AD:DP:GQ:PL    1/1:0,249:249:99:8181,653,0
1    21754920    rs183181907    G    T    101.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.46;MQ0=0;QD=20.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:134,12,0
1    21754996    rs12024079    C    T    169.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.41;MQ0=0;QD=24.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:202,18,0
1    21755055    rs12024104    C    A    61.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.96;MQ0=5;QD=6.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:3,7:10:9.02:94,9,0
1    21755345    rs41302023    T    C    575.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.83;MQ0=1;QD=26.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,22:22:51.11:609,51,0
1    21755408    rs41312003    A    G    496.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.49;MQ0=7;QD=19.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,25:25:48.10:530,48,0
1    21755453    rs3856177    G    A    218.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.04;MQ0=7;QD=13.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,16:16:21.06:252,21,0
1    21755517    rs41300136    C    T    61.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.88;MQ0=18;QD=2.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:8,16:24:9.02:94,9,0
1    21755756    rs56343055    G    C    185.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.03;MQ0=0;QD=26.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:218,18,0
1    21755867    rs7522332    A    G    567.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.68;MQ0=2;QD=24.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,23:23:54.14:600,54,0
1    21755906    rs3738922    G    A    412.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.16;MQ0=2;QD=16.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:1,22:25:36.10:445,36,0
1    21756008    rs3894725    G    T    276.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.54;MQ0=0;QD=27.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:310,27,0
1    21756069    rs7532750    G    A    61.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.22;MQ0=0;QD=12.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HS6ST1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481504    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:94,9,0
1    21771997    rs12118362    G    A    31.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.44;MQ0=0;QD=15.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475869    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:62,6,0
1    21795388    rs1827293    A    G    2493.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=38.36;SNPEFF_AMINO_ACID_CHANGE=Y114C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21795181_21795390;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318249    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2527,184,0
1    21797419    rs4654944    T    C    238.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486229    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:271,21,0
1    21797996    rs2004380    G    A    2228.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=58.57;MQ0=0;QD=35.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486229    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2262,175,0
1    21799489    rs1971327    T    C    883.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.23;MQ0=0;QD=30.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486229    GT:AD:DP:GQ:PL    1/1:0,29:29:81.20:917,81,0
1    21799823    rs1971328    A    G    3526.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=37.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486229    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3526,262,0
1    21800185    rs7520015    T    G    989.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486229    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1022,78,0
1    21800219    rs10916996    C    T    351.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486229    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:384,30,0
1    21801346    rs7531217    G    A    3083.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.524;QD=35.86;ReadPosRankSum=0.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318220    GT:AD:DP:GQ:PL    1/1:1,85:86:99:3117,211,0
1    21804815    rs7535654    T    G    5196.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=58.54;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318220    GT:AD:DP:GQ:PL    1/1:0,160:160:99:5196,391,0
1    21805730    rs2316504    A    G    1349.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318220    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1383,102,0
1    21805978    rs4654948    G    A    1577.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.966;MQ=57.75;MQ0=2;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318220    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1611,123,0
1    21806341    rs79760554    G    A    70.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9876;MQ=45.75;MQ0=0;MQRankSum=0.956;QD=8.78;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318220    GT:AD:DP:GQ:PL    1/1:3,5:8:11.99:103,12,0
1    21806447    rs3820296    T    C    1020.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.57;MQ0=0;QD=18.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318220    GT:AD:DP:GQ:PL    1/1:0,55:55:87.22:1053,87,0
1    21806667    rs12043777    C    G    190.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.41;MQ0=2;QD=8.65;SNPEFF_AMINO_ACID_CHANGE=D374E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21806544_21806716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454000    GT:AD:DP:GQ:PL    1/1:0,22:22:21.04:223,21,0
1    21806710    rs12034222    T    G    256.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.41;MQ0=2;QD=17.08;SNPEFF_AMINO_ACID_CHANGE=L389V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21806544_21806716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454000    GT:AD:DP:GQ:PL    1/1:0,15:15:27.05:289,27,0
1    21806792    rs56286426    C    T    95.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.4;MQ0=0;QD=19.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477050    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:128,12,0
1    21807273    rs61775950    A    G    346.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.68;MQ0=9;QD=9.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477050    GT:AD:DP:GQ:PL    1/1:0,36:36:42.02:379,42,0
1    21808159    rs71512991    G    A    2103.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3999;MQ=29.11;MQ0=16;QD=20.23;SNPEFF_AMINO_ACID_CHANGE=S431;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21808090_21808262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454000    GT:AD:DP:GQ:PL    1/1:10,94:104:99:2136,195,0
1    21808207    rs146564096    A    C    447.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=13.92;MQ0=31;QD=6.78;SNPEFF_AMINO_ACID_CHANGE=G447;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21808090_21808262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454000    GT:AD:DP:GQ:PL    1/1:15,51:66:54.02:480,54,0
1    21808223    rs145079058    T    C    260.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.67;MQ0=27;QD=5.21;SNPEFF_AMINO_ACID_CHANGE=L453;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21808090_21808262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454000    GT:AD:DP:GQ:PL    1/1:9,41:50:33.01:293,33,0
1    21808281    rs143561157    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.67;MQ0=11;QD=2.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477050    GT:AD:DP:GQ:PL    1/1:0,14:14:6.02:67,6,0
1    21808307    rs146767219    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.54;MQ0=12;QD=2.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477050    GT:AD:DP:GQ:PL    1/1:2,14:16:6.02:67,6,0
1    21808949    .    T    G    146.19    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=234;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=4.68;MQ0=229;QD=0.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477050    GT:AD:DP:GQ:PL    1/1:117,116:234:15.04:179,15,0
1    21809436    .    C    T    298.71    MQFilter40    AC=2;AF=1.00;AN=2;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.01;MQ0=2;QD=24.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477050    GT:AD:DP:GQ:PL    1/1:1,11:12:30.07:332,30,0
1    21809524    rs71512993    A    C    1376.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.53;MQ0=1;QD=28.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477050    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1410,126,0
1    21809750    .    T    C    1568.01    MQFilter40    AC=2;AF=1.00;AN=2;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=28.92;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=Y521;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21809636_21809960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454000    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1601,144,0
1    21809924    .    G    C    106.25    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.22;MQ0=54;QD=1.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434838    GT:AD:DP:GQ:PL    1/1:0,58:58:12.03:139,12,0
1    21889635    rs1780316    T    C    1284.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.37;MQ0=0;QD=29.86;SNPEFF_AMINO_ACID_CHANGE=S110;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21889603_21889777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374832    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1317,111,0
1    21890386    rs1256335    G    A    82.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374832    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
1    21890464    rs1767428    A    G    576.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374832    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:609,51,0
1    21900420    rs2275370    A    G    129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374830    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
1    21926187    rs1767445    C    T    117.32    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=14.66;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460929    GT:AD:DP:GQ:PL    0/1:3,5:8:64.82:147,0,65
1    21928344    rs2275366    C    G    232.53    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=17.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460929    GT:AD:DP:GQ:PL    0/1:5,8:13:99:263,0,141
1    21929260    rs829368    A    G    195.22    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.63;DB;DP=18;Dels=0.0;FS=6.107;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.453;QD=10.85;ReadPosRankSum=0.815;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460929    GT:AD:DP:GQ:PL    0/1:11,7:18:99:225,0,316
1    21934667    rs829371    G    A    639.77    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=2.769;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=60.0;MQ0=0;MQRankSum=1.674;QD=24.61;ReadPosRankSum=0.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359708    GT:AD:DP:GQ:PL    0/1:6,20:26:99:670,0,142
1    21935433    rs861212    G    T    300.78    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.999;DB;DP=45;Dels=0.0;FS=1.399;HRun=0;HaplotypeScore=0.734;MQ=59.49;MQ0=0;MQRankSum=0.109;QD=6.68;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359708    GT:AD:DP:GQ:PL    0/1:31,14:45:99:331,0,943
1    21937807    rs1256281    C    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359708    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    21938375    rs2275364    T    G    236.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.659;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.89;MQ0=0;MQRankSum=-1.042;QD=11.28;ReadPosRankSum=1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359708    GT:AD:DP:GQ:PL    0/1:12,8:21:99:267,0,440
1    21940555    rs2275363    C    T    111.89    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=12.43;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=A107T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_21940479_21940582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374758    GT:AD:DP:GQ:PL    0/1:4,5:9:99:142,0,118
1    21944041    rs150959892    G    A    71.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=2.8663;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447293    GT:AD:DP:GQ:PL    0/1:3,4:7:62.22:102,0,62
1    21944352    rs748488    A    G    279.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=15.51;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447293    GT:AD:DP:GQ:PL    0/1:9,9:18:99:309,0,271
1    21946415    rs1681255    G    A    227.50    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.368;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=-0.578;QD=13.38;ReadPosRankSum=1.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464457    GT:AD:DP:GQ:PL    0/1:8,9:17:99:257,0,252
1    21961339    rs10799706    A    T    415.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290101    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:449,33,0
1    21991474    rs76768405    G    A    81.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=20.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317967    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:113,9,0
1    21991760    rs75449578    C    T    743.95    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=49;Dels=0.0;FS=2.471;HRun=1;HaplotypeScore=0.9983;MQ=59.05;MQ0=0;MQRankSum=-0.774;QD=15.18;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374765    GT:AD:DP:GQ:PL    0/1:22,27:49:99:774,0,594
1    22016719    rs1618590    T    C    293.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308271    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:327,24,0
1    22021862    rs16825823    G    A    77.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.47;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308271    GT:AD:DP:GQ:PL    0/1:2,3:5:67.27:107,0,67
1    22032472    rs11426922    A    AT    390.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=20.2312;IndelType=I;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308271    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:432,30,0
1    22050264    rs900488    C    G    265.15    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.472;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=11.53;ReadPosRankSum=-0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421625    GT:AD:DP:GQ:PL    0/1:14,9:23:99:295,0,512
1    22050649    rs2275668    C    A    706.51    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.548;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=17.23;ReadPosRankSum=-0.2;SNPEFF_AMINO_ACID_CHANGE=V3L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22050391_22051612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374732    GT:AD:DP:GQ:PL    0/1:16,25:41:99:737,0,551
1    22063149    rs10753517    G    A    164.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.0;QD=13.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308271    GT:AD:DP:GQ:PL    0/1:6,6:12:99:195,0,217
1    22082923    rs10458384    G    A    447.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.028;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.48;MQ0=0;MQRankSum=-0.373;QD=13.98;ReadPosRankSum=-0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489108    GT:AD:DP:GQ:PL    0/1:16,16:32:99:477,0,368
1    22082967    rs35545280    C    CA    134.93    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.96;DB;DP=70;FS=4.491;HRun=20;HaplotypeScore=566.8313;IndelType=I;MQ=48.39;MQ0=0;MQRankSum=-0.036;QD=1.93;ReadPosRankSum=0.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489108    GT:AD:DP:GQ:PL    0/1:38,8:70:99:174,0,130
1    22141030    rs75506362    C    T    269.95    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.945;QD=12.85;ReadPosRankSum=-1.172;SNPEFF_AMINO_ACID_CHANGE=D75;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22140891_22141316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344642    GT:AD:DP:GQ:PL    0/1:11,10:21:99:300,0,335
1    22148164    rs6695528    G    A    126.10    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7719;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=7.88;ReadPosRankSum=-0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:9,7:16:99:156,0,295
1    22149935    rs897467    T    C    266.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_AMINO_ACID_CHANGE=S4350;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22148738_22149981;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:300,24,0
1    22150120    rs3736360    C    T    610.10    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.837;DB;DP=60;Dels=0.0;FS=1.034;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-1.29;QD=10.17;ReadPosRankSum=-0.505;SNPEFF_AMINO_ACID_CHANGE=S4331N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22150109_22150212;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:32,28:60:99:640,0,936
1    22150160    rs3736358    G    T    571.95    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=1.63;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3893;MQ=59.58;MQ0=0;MQRankSum=-0.52;QD=10.4;ReadPosRankSum=0.998;SNPEFF_AMINO_ACID_CHANGE=R4318;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22150109_22150212;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:32,23:55:99:602,0,1025
1    22150257    rs3736357    C    T    354.32    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.685;QD=20.84;ReadPosRankSum=-0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484271    GT:AD:DP:GQ:PL    0/1:5,12:17:99:384,0,149
1    22154845    rs2228347    A    G    601.28    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.43;MQ0=0;MQRankSum=0.175;QD=18.22;ReadPosRankSum=0.759;SNPEFF_AMINO_ACID_CHANGE=D4104;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22154748_22154919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:12,21:33:99:631,0,401
1    22154987    rs10917052    G    A    218.17    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=16.78;ReadPosRankSum=-0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469378    GT:AD:DP:GQ:PL    0/1:3,9:12:93.98:248,0,94
1    22155723    rs7518070    T    C    174.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426143    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
1    22155841    rs12042189    T    C    170.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=14;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;MQRankSum=-0.696;QD=12.17;ReadPosRankSum=-0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426143    GT:AD:DP:GQ:PL    0/1:6,8:14:99:200,0,123
1    22155853    rs12023794    C    T    234.76    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=17;Dels=0.0;FS=4.598;HRun=0;HaplotypeScore=0.8667;MQ=58.63;MQ0=0;MQRankSum=1.203;QD=13.81;ReadPosRankSum=-0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426143    GT:AD:DP:GQ:PL    0/1:8,9:17:99:265,0,212
1    22157689    rs3736355    G    A    1121.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426143    GT:AD:DP:GQ:PL    1/1:0,38:38:96.26:1155,96,0
1    22158120    rs2270701    G    T    237.42    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=17;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=13.97;ReadPosRankSum=-0.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426143    GT:AD:DP:GQ:PL    0/1:8,9:17:99:267,0,245
1    22159008    rs2229487    C    A    481.94    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.095;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.475;QD=13.39;ReadPosRankSum=-0.665;SNPEFF_AMINO_ACID_CHANGE=V3729;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22158988_22159099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:17,19:36:99:512,0,506
1    22160111    rs17459139    C    T    168.29    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.558;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.955;QD=9.9;ReadPosRankSum=-0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471322    GT:AD:DP:GQ:PL    0/1:11,6:17:99:198,0,332
1    22160148    rs7547731    C    T    140.11    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=10.78;ReadPosRankSum=-1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471322    GT:AD:DP:GQ:PL    0/1:6,7:13:99:170,0,174
1    22161275    rs2229492    G    A    457.59    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=31;Dels=0.0;FS=1.468;HRun=1;HaplotypeScore=0.8667;MQ=58.5;MQ0=0;MQRankSum=0.06;QD=14.76;ReadPosRankSum=0.734;SNPEFF_AMINO_ACID_CHANGE=V3539;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22161172_22161438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:14,17:31:99:488,0,346
1    22165901    rs2291826    A    G    254.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=22;Dels=0.0;FS=1.801;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.107;QD=11.58;ReadPosRankSum=-0.178;SNPEFF_AMINO_ACID_CHANGE=A3284;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22165864_22166043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:9,12:22:99:285,0,286
1    22165987    rs2291827    G    A    149.13    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=58.84;MQ0=0;MQRankSum=-0.044;QD=7.46;ReadPosRankSum=-1.272;SNPEFF_AMINO_ACID_CHANGE=H3256Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22165864_22166043;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:13,7:20:99:179,0,401
1    22167988    rs2270697    G    T    95.23    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=6.8;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430507    GT:AD:DP:GQ:PL    0/1:9,5:14:99:125,0,228
1    22168216    rs7556412    C    T    218.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430507    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:251,18,0
1    22168310    rs12043008    A    G    35.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.92;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430507    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:66,0,33
1    22170828    rs2270698    C    G    201.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=7.45;ReadPosRankSum=1.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430507    GT:AD:DP:GQ:PL    0/1:18,9:27:99:231,0,529
1    22172458    rs7355045    T    C    266.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430507    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:299,24,0
1    22173762    rs12023884    G    A    201.25    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=11.84;ReadPosRankSum=1.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493940    GT:AD:DP:GQ:PL    0/1:10,7:17:99:231,0,289
1    22174426    rs2290501    T    G    641.05    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.034;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5424;MQ=58.51;MQ0=0;MQRankSum=0.847;QD=13.64;ReadPosRankSum=-1.44;SNPEFF_AMINO_ACID_CHANGE=Y9S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22174182_22174451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453796    GT:AD:DP:GQ:PL    0/1:25,22:47:99:671,0,603
1    22174600    rs3767138    A    G    564.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493940    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:597,45,0
1    22176500    rs6658388    G    T    964.35    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.601;DB;DP=77;Dels=0.0;FS=9.92;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.274;QD=12.52;ReadPosRankSum=-0.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493940    GT:AD:DP:GQ:PL    0/1:42,35:77:99:994,0,1232
1    22176831    rs2290500    C    T    142.38    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4297;MQ=54.25;MQ0=0;MQRankSum=2.181;QD=12.94;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493940    GT:AD:DP:GQ:PL    0/1:5,6:11:99:172,0,126
1    22179673    rs12049614    T    C    134.92    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.49;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:1,5:6:24.18:165,0,24
1    22181723    rs77060492    G    C    35.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:66,0,71
1    22183471    rs12024579    A    C    1255.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,39:39:93.31:1288,93,0
1    22183739    rs2305562    A    G    965.87    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.17;DB;DP=71;Dels=0.0;FS=1.986;HRun=1;HaplotypeScore=2.5528;MQ=57.08;MQ0=0;MQRankSum=0.378;QD=13.6;ReadPosRankSum=-2.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:36,35:71:99:996,0,1129
1    22186234    rs10917056    A    G    190.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:223,18,0
1    22191454    rs897471    G    A    137.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=13.78;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=A1503V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22191336_22191566;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    0/1:4,6:10:99:168,0,125
1    22199081    rs2501266    A    T    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498495    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
1    22199245    rs2229482    C    T    314.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=V1299;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22199113_22199253;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:348,27,0
1    22199821    rs2454290    G    A    3596.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=57.18;MQ0=0;QD=30.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498495    GT:AD:DP:GQ:PL    1/1:0,116:117:99:3597,283,0
1    22200067    rs2247741    A    G    436.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498495    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:470,36,0
1    22200082    rs2445136    T    C    245.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498495    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:279,24,0
1    22200835    rs2445135    C    G    152.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498495    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:186,15,0
1    22202109    rs2501265    C    T    798.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:832,63,0
1    22203259    rs2454295    A    G    251.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:284,24,0
1    22205408    rs2454294    T    C    439.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:473,36,0
1    22205466    rs2454293    T    C    742.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=28.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,26:26:63.20:775,63,0
1    22206649    rs989994    T    C    1130.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.34;SNPEFF_AMINO_ACID_CHANGE=N765S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22206600_22206747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1164,87,0
1    22206942    rs1874793    G    A    561.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.07;SNPEFF_AMINO_ACID_CHANGE=A703;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22206856_22207052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:594,45,0
1    22207235    rs1874792    T    C    279.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_AMINO_ACID_CHANGE=M638V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22207149_22207328;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:312,24,0
1    22207804    rs66803368    ACCCAGGGTGGCAG    A    3559.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=528.0074;IndelType=D;MQ=35.13;MQ0=0;QD=84.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:11,30:42:93.32:3560,93,0
1    22208030    rs921847    C    T    896.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.75;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,27:27:72.22:929,72,0
1    22211222    rs4654994    T    C    407.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=27.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412328    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:441,33,0
1    22215088    rs2445140    T    C    198.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439717    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
1    22216574    rs2254358    C    A    2297.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3548;MQ=59.26;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=G81V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22216474_22216634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412328    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2330,181,0
1    22216604    rs2254357    C    G    2421.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=59.35;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=W71S;SNPEFF_CODON_CHANGE=tGg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22216474_22216634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412328    GT:AD:DP:GQ:PL    1/1:0,77:78:99:2455,193,0
1    22217108    rs2501260    G    A    4900.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.97;MQ0=0;QD=28.66;SNPEFF_AMINO_ACID_CHANGE=F108;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22217078_22217187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374695    GT:AD:DP:GQ:PL    1/1:0,171:171:99:4901,370,0
1    22299656    rs4233282    T    G    274.83    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.076;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.14;MQ0=0;MQRankSum=1.899;QD=13.74;ReadPosRankSum=0.988;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:9,11:20:99:305,0,224
1    22307216    rs113430470    G    C    135.49    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=22.58;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:1,5:6:15.38:165,0,15
1    22307340    rs7528228    C    T    165.89    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.292;DB;DP=40;Dels=0.0;FS=14.137;HRun=0;HaplotypeScore=1.7128;MQ=48.54;MQ0=3;MQRankSum=-4.274;QD=4.15;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=S51;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22307317_22307414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:28,12:40:99:196,0,788
1    22307358    rs7528300    C    G    97.93    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=42;Dels=0.0;FS=15.64;HRun=0;HaplotypeScore=4.6666;MQ=49.76;MQ0=3;MQRankSum=-3.917;QD=2.33;ReadPosRankSum=2.998;SNPEFF_AMINO_ACID_CHANGE=T57;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22307317_22307414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:31,11:42:99:128,0,944
1    22307538    rs7528405    C    T    1717.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.76;MQ0=0;QD=35.06;SNPEFF_AMINO_ACID_CHANGE=R79W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22307531_22307665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1751,132,0
1    22307680    rs143622107    C    T    832.45    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=3.616;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9715;MQ=56.31;MQ0=2;MQRankSum=1.721;QD=12.61;ReadPosRankSum=-0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:33,31:66:99:862,0,722
1    22307743    rs6689384    T    C    65.76    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.176;DB;DP=25;Dels=0.0;FS=6.435;HRun=0;HaplotypeScore=0.0;MQ=56.81;MQ0=1;MQRankSum=0.635;QD=2.63;ReadPosRankSum=-1.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:17,8:25:95.76:96,0,646
1    22307829    rs7542585    A    C    80.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.84;MQ0=1;QD=20.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
1    22309957    rs12023741    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    22310041    .    A    AATG    210.41    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DP=11;FS=0.0;HRun=0;HaplotypeScore=107.0504;IndelType=I;MQ=47.84;MQ0=0;MQRankSum=1.589;QD=17.53;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:5,4:11:56.41:249,0,56
1    22310080    rs10799723    G    A    661.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.8;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:695,57,0
1    22310139    rs10733031    T    G    541.31    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.265;DB;DP=68;Dels=0.0;FS=1.286;HRun=0;HaplotypeScore=1.748;MQ=46.36;MQ0=1;MQRankSum=-0.233;QD=7.96;ReadPosRankSum=-0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:40,28:68:99:571,0,1180
1    22310145    rs10733032    C    T    713.87    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=72;Dels=0.0;FS=1.208;HRun=0;HaplotypeScore=0.734;MQ=46.53;MQ0=1;MQRankSum=-0.845;QD=9.91;ReadPosRankSum=-0.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:42,30:72:99:744,0,1219
1    22310262    rs10733033    G    C    3023.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.243;DB;DP=115;Dels=0.0;FS=3.096;HRun=2;HaplotypeScore=1.811;MQ=41.57;MQ0=3;MQRankSum=-1.473;QD=26.29;ReadPosRankSum=0.89;SNPEFF_AMINO_ACID_CHANGE=P146;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22310187_22310323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    1/1:1,114:115:99:3056,227,0
1    22310411    rs28468423    A    G    248.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.9;MQ0=1;MQRankSum=-2.645;QD=8.86;ReadPosRankSum=-0.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374666    GT:AD:DP:GQ:PL    0/1:14,14:28:99:278,0,452
1    22310413    rs7549398    A    G    278.57    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.974;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.63;MQ0=0;MQRankSum=-2.615;QD=10.32;ReadPosRankSum=-0.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374666    GT:AD:DP:GQ:PL    0/1:13,14:27:99:309,0,390
1    22310662    rs6426735    G    T    436.89    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=0.865;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7256;MQ=58.73;MQ0=0;MQRankSum=1.15;QD=9.1;ReadPosRankSum=0.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374666    GT:AD:DP:GQ:PL    0/1:31,16:47:99:467,0,936
1    22310674    rs7538207    C    T    478.95    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=2.715;DB;DP=50;Dels=0.0;FS=4.638;HRun=1;HaplotypeScore=0.9916;MQ=58.78;MQ0=0;MQRankSum=0.154;QD=9.58;ReadPosRankSum=1.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374666    GT:AD:DP:GQ:PL    0/1:33,17:50:99:509,0,781
1    22310725    rs3820287    G    C    427.51    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.394;DB;DP=48;Dels=0.0;FS=2.529;HRun=2;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-0.439;QD=8.91;ReadPosRankSum=-0.551;SNPEFF_AMINO_ACID_CHANGE=P181;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22310682_22310824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:29,19:48:99:458,0,847
1    22310811    rs112944567    G    A    446.47    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=38;Dels=0.0;FS=5.188;HRun=0;HaplotypeScore=1.6988;MQ=44.33;MQ0=3;MQRankSum=0.139;QD=11.75;ReadPosRankSum=-0.902;SNPEFF_AMINO_ACID_CHANGE=R113H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22310682_22310824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400277    GT:AD:DP:GQ:PL    0/1:16,21:38:99:476,0,448
1    22310824    rs1803531    T    C    804.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.5;MQ0=3;QD=25.96;SNPEFF_AMINO_ACID_CHANGE=N117;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22310682_22310824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400277    GT:AD:DP:GQ:PL    1/1:0,31:31:72.18:838,72,0
1    22310933    rs12130164    C    G    173.11    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.87;MQ0=3;MQRankSum=-0.278;QD=11.54;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374666    GT:AD:DP:GQ:PL    0/1:6,9:15:95.98:203,0,96
1    22311011    rs12122445    G    A    61.14    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.38;MQ0=0;MQRankSum=-1.231;QD=12.23;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374666    GT:AD:DP:GQ:PL    0/1:2,3:5:63.58:91,0,64
1    22311059    rs12122466    G    C    33.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.73;MQ0=0;MQRankSum=-0.736;QD=11.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374666    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:64,0,28
1    22313103    rs114895362    C    G    203.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=33;Dels=0.0;FS=1.533;HRun=1;HaplotypeScore=0.0;MQ=54.7;MQ0=0;MQRankSum=1.85;QD=6.18;ReadPosRankSum=-0.386;SNPEFF_AMINO_ACID_CHANGE=A144G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22313024_22313176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400277    GT:AD:DP:GQ:PL    0/1:22,11:33:99:234,0,773
1    22313161    rs1803530    T    C    622.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.05;MQ0=0;QD=25.96;SNPEFF_AMINO_ACID_CHANGE=I163;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22313024_22313176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400277    GT:AD:DP:GQ:PL    1/1:0,23:24:54.16:656,54,0
1    22313197    rs34963341    C    A    292.76    MQFilter40    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.606;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.9;MQ0=0;MQRankSum=-0.793;QD=18.3;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374666    GT:AD:DP:GQ:PL    0/1:5,11:16:99:323,0,128
1    22315662    rs12082371    C    T    84.94    MQFilter40    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.33;MQ0=3;MQRankSum=-0.465;QD=3.86;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337107    GT:AD:DP:GQ:PL    0/1:15,7:22:99:115,0,274
1    22329414    rs10917107    G    A    413.87    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.134;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.668;QD=31.84;ReadPosRankSum=-1.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400277    GT:AD:DP:GQ:PL    0/1:1,12:13:1.52:443,0,2
1    22331822    rs59210655    C    T    36.47    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=49.88;MQ0=1;MQRankSum=-2.166;QD=3.32;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290122    GT:AD:DP:GQ:PL    0/1:7,4:11:66.47:66,0,221
1    22331829    rs57093046    C    A    33.46    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.88;MQ0=1;MQRankSum=-2.166;QD=3.04;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290122    GT:AD:DP:GQ:PL    0/1:7,4:11:63.46:63,0,259
1    22332008    rs56968853    T    C    154.16    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=40;Dels=0.0;FS=6.513;HRun=0;HaplotypeScore=0.0;MQ=54.78;MQ0=1;MQRankSum=-1.854;QD=3.85;ReadPosRankSum=1.099;SNPEFF_AMINO_ACID_CHANGE=D66;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22331940_22332037;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290122    GT:AD:DP:GQ:PL    0/1:30,10:40:99:184,0,949
1    22332319    rs76548941    G    A    108.18    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=0.766;DB;DP=37;Dels=0.0;FS=4.099;HRun=0;HaplotypeScore=3.0477;MQ=55.92;MQ0=1;MQRankSum=-3.83;QD=2.92;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290122    GT:AD:DP:GQ:PL    0/1:29,7:37:99:138,0,894
1    22332332    rs74922245    T    C    72.40    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.687;DB;DP=36;Dels=0.0;FS=8.076;HRun=0;HaplotypeScore=1.5115;MQ=54.36;MQ0=1;MQRankSum=-4.262;QD=2.01;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290122    GT:AD:DP:GQ:PL    0/1:27,9:36:99:102,0,787
1    22332333    rs76102053    G    A    70.80    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.043;DB;DP=36;Dels=0.0;FS=8.243;HRun=0;HaplotypeScore=1.5115;MQ=54.36;MQ0=1;MQRankSum=-4.046;QD=1.97;ReadPosRankSum=-0.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290122    GT:AD:DP:GQ:PL    0/1:28,8:36:99:101,0,788
1    22332411    rs61778015    A    G    78.47    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9995;MQ=48.89;MQ0=0;MQRankSum=-3.387;QD=4.9;ReadPosRankSum=-1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290122    GT:AD:DP:GQ:PL    0/1:9,7:16:99:108,0,333
1    22333538    rs11583776    A    G    239.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.06;MQ0=2;QD=19.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374661    GT:AD:DP:GQ:PL    1/1:0,12:12:24.06:272,24,0
1    22333595    rs3820290    G    A    187    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.66;MQ0=3;QD=18.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374661    GT:AD:DP:GQ:PL    1/1:1,9:10:18.05:220,18,0
1    22336277    rs3820285    C    G    665.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=28.95;SNPEFF_AMINO_ACID_CHANGE=A241G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22336198_22336350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290122    GT:AD:DP:GQ:PL    1/1:0,23:23:51.17:699,51,0
1    22336371    rs3806297    C    A    334.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.95;MQ0=0;QD=27.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374661    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:368,30,0
1    22408106    rs2501282    G    A    407.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315554    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:440,36,0
1    22408465    rs2056976    C    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315554    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    22447523    rs10753529    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290167    GT:AD:DP:GQ:PL    1/1:0,3:4:6.02:83,6,0
1    22447645    rs41420150    C    CTG    733.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=43.1923;IndelType=I;MQ=62.65;MQ0=0;QD=45.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290167    GT:AD:DP:GQ:PL    1/1:1,13:16:45.15:775,45,0
1    22816262    rs1267005    T    C    235.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374649    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:268,21,0
1    22817717    rs12566074    A    G    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374649    GT:AD:DP:GQ:PL    0/1:2,2:4:66.17:68,0,66
1    22827931    rs4655071    C    T    294.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=11.76;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374649    GT:AD:DP:GQ:PL    0/1:10,15:25:99:324,0,331
1    22832743    rs209732    A    T    1581.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=29.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374649    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1614,120,0
1    22835677    rs209729    A    G    2845.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=38.45;SNPEFF_AMINO_ACID_CHANGE=Y483C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22835593_22835726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2879,211,0
1    22837586    rs66892436    CT    C    203.03    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.018;DB;DP=50;FS=3.047;HRun=17;HaplotypeScore=381.8928;IndelType=D;MQ=55.17;MQ0=0;MQRankSum=-1.041;QD=3.98;ReadPosRankSum=1.004;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400239    GT:AD:DP:GQ:PL    0/1:25,20:50:99:242,0,132
1    22837849    rs209727    C    T    681.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=4.394;DB;DP=35;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.5784;MQ=59.34;MQ0=0;MQRankSum=-0.354;QD=19.47;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    0/1:14,21:35:99:712,0,389
1    22837944    rs2073168    T    C    64.75    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=8.09;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    0/1:5,3:8:94.74:95,0,174
1    22846452    rs7551801    C    G    687.73    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.284;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.785;QD=15.28;ReadPosRankSum=1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    0/1:24,21:45:99:718,0,853
1    22846709    rs209720    G    A    1944.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=V885M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22846554_22846768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1977,150,0
1    22848972    rs61769198    A    C    957.08    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.696;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7594;MQ=59.72;MQ0=0;MQRankSum=0.741;QD=11.53;ReadPosRankSum=1.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    0/1:44,39:83:99:987,0,1301
1    22849003    rs998978    A    C    856.93    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=61;Dels=0.0;FS=1.719;HRun=0;HaplotypeScore=2.8112;MQ=60.0;MQ0=0;MQRankSum=1.176;QD=14.05;ReadPosRankSum=0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    0/1:30,31:61:99:887,0,902
1    22852715    rs881646    G    C    540.57    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=53;Dels=0.0;FS=1.145;HRun=2;HaplotypeScore=2.5395;MQ=59.56;MQ0=0;MQRankSum=0.086;QD=10.2;ReadPosRankSum=0.542;SNPEFF_AMINO_ACID_CHANGE=P1070;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22852695_22853855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    0/1:29,24:53:99:571,0,801
1    22853141    rs2281354    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374651    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    22912819    rs639519    T    C    194.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000166244    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
1    22924783    rs11586741    C    T    595.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000166244    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:628,48,0
1    22925292    rs664340    C    G    229.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000166244    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:262,21,0
1    22965438    rs172378    A    G    523.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.17;SNPEFF_AMINO_ACID_CHANGE=E90G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22965362_22965442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339353    GT:AD:DP:GQ:PL    1/1:0,20:20:42.14:556,42,0
1    22970642    rs80083522    C    T    164.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.41;SNPEFF_AMINO_ACID_CHANGE=P42;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_22970504_22970697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374637    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
1    22974297    rs9434    C    A    665.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.94;MQ0=0;QD=27.71;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510260    GT:AD:DP:GQ:PL    1/1:0,23:24:57.17:698,57,0
1    22985839    rs140338008    AGATG    A    511.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=122.5335;IndelType=D;MQ=56.39;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314933    GT:AD:DP:GQ:PL    1/1:5,12:17:36.12:553,36,0
1    22987958    rs10580    A    G    537.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.98;MQ0=0;QD=31.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432749    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:570,45,0
1    23075545    rs2218194    A    C    458.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=26.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374625    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:492,39,0
1    23101688    rs1561624    T    G    644.77    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=2.508;DB;DP=74;Dels=0.0;FS=0.929;HRun=0;HaplotypeScore=1.565;MQ=59.69;MQ0=0;MQRankSum=0.266;QD=8.71;ReadPosRankSum=-1.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374625    GT:AD:DP:GQ:PL    0/1:48,26:74:99:675,0,1394
1    23108089    rs2817904    A    G    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374625    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,110
1    23208720    rs309485    C    G    69.39    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.67;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374625    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,134
1    23208925    rs36069879    G    A    574.08    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.404;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7883;MQ=60.0;MQ0=0;MQRankSum=-1.509;QD=9.11;ReadPosRankSum=1.742;SNPEFF_AMINO_ACID_CHANGE=P453;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23208852_23208976;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374627    GT:AD:DP:GQ:PL    0/1:42,21:63:99:604,0,1162
1    23219493    rs309472    T    C    1324.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.44;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=G510;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23219374_23219539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374627    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1358,105,0
1    23232400    rs309502    C    T    696.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374625    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:730,54,0
1    23233600    rs309500    A    G    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374625    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
1    23236826    rs309497    C    T    256.91    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.327;QD=13.52;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374625    GT:AD:DP:GQ:PL    0/1:9,10:19:99:287,0,271
1    23285678    rs309510    A    G    83.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTBL1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    23286224    rs11577583    T    C    145.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTBL1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:179,15,0
1    23286752    rs751168    T    G    85.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTBL1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    23289568    rs10799777    T    C    208.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTBL1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:242,18,0
1    23380198    rs579785    A    G    495.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356634    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:529,39,0
1    23381795    rs11380187    A    AT    246.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=10.9916;IndelType=I;MQ=60.0;MQ0=0;QD=41.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356634    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:288,18,0
1    23399932    rs967605    C    T    2199.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356634    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2232,163,0
1    23405794    rs2072945    A    C    492.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302291    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:526,45,0
1    23405872    rs2072944    T    C    727.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302291    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:760,57,0
1    23407712    rs2072943    G    C    133.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465864    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    23409538    rs2235546    G    A    123.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465864    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
1    23418153    rs10799790    C    T    2128.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_AMINO_ACID_CHANGE=D868N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23417683_23420873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUZP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302291    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2161,163,0
1    23419261    rs477717    G    A    4787.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.84;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=S498;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23417683_23420873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUZP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302291    GT:AD:DP:GQ:PL    1/1:0,146:146:99:4788,364,0
1    23419374    rs3765407    G    T    5269.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.1652;MQ=58.79;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=Q461K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23417683_23420873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUZP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302291    GT:AD:DP:GQ:PL    1/1:0,154:154:99:5270,415,0
1    23419383    rs477830    C    T    5726.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4998;MQ=58.94;MQ0=0;QD=37.43;SNPEFF_AMINO_ACID_CHANGE=G458S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23417683_23420873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUZP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302291    GT:AD:DP:GQ:PL    1/1:0,153:153:99:5726,427,0
1    23419855    rs1983965    T    C    3770.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=T300;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23417683_23420873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUZP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302291    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3771,286,0
1    23688933    rs2849028    A    G    1757.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=N314;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23685941_23689714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF436;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314011    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1791,132,0
1    23693422    rs2849025    T    C    456.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF436;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314011    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:489,36,0
1    23695671    .    C    CG    113.08    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DP=8;FS=0.0;HRun=8;HaplotypeScore=24.0277;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=14.14;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF436;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314011    GT:AD:DP:GQ:PL    0/1:3,5:8:33.88:152,0,34
1    23696152    rs665977    G    A    1239.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.963;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=59.36;MQ0=0;MQRankSum=0.096;QD=34.42;ReadPosRankSum=1.444;SNPEFF_AMINO_ACID_CHANGE=R121Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23695729_23698275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf213;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335648    GT:AD:DP:GQ:PL    1/1:1,35:36:66.71:1272,67,0
1    23707692    rs650102    A    G    84.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476978    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    23710805    rs605468    A    G    3905.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450454    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3905,295,0
1    23713626    rs1198445    A    G    175.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450454    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:209,18,0
1    23713952    rs676363    T    G    209.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450454    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
1    23720185    rs4648892    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450454    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    23720260    rs2486078    T    G    299.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450454    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:332,27,0
1    23724183    rs2275355    C    T    2423.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9468;MQ=59.66;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450454    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2456,184,0
1    23735241    rs1198423    G    T    122.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374601    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
1    23743581    rs2156087    C    G    339.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492271    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:373,27,0
1    23744169    rs3795295    A    G    31.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.49;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374601    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:61,0,34
1    23751140    rs71514235    G    T    1570.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336689    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1604,120,0
1    23756155    rs1198432    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374579    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    23758134    rs1198434    A    G    694.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.46;MQ0=0;QD=26.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374579    GT:AD:DP:GQ:PL    1/1:0,25:26:54.17:727,54,0
1    23760408    rs1207124    A    G    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475814    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    23762679    rs12401753    A    G    318.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475814    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:351,27,0
1    23764149    rs2297841    C    G    115.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478858    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
1    23765472    rs1767148    A    G    198.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478858    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
1    23836364    rs2075993    A    G    138.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=15.42;ReadPosRankSum=1.067;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361729    GT:AD:DP:GQ:PL    0/1:3,6:9:55.75:169,0,56
1    23847464    rs2075995    C    A    538.14    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DB;DP=45;Dels=0.0;FS=1.238;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.164;QD=11.96;ReadPosRankSum=-0.07;SNPEFF_AMINO_ACID_CHANGE=Q226H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23847405_23847563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361729    GT:AD:DP:GQ:PL    0/1:21,24:45:99:568,0,573
1    23885498    rs11574    T    C    224.31    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.828;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.14;MQ0=0;MQRankSum=0.979;QD=8.31;ReadPosRankSum=0.126;SNPEFF_AMINO_ACID_CHANGE=T105A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23885426_23885510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ID3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374561    GT:AD:DP:GQ:PL    0/1:17,10:27:99:254,0,541
1    23885599    rs2067053    T    C    343.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.326;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.41;MQ0=0;MQRankSum=0.372;QD=8.8;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ID3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374561    GT:AD:DP:GQ:PL    0/1:26,13:39:99:373,0,836
1    23965517    rs61777309    G    A    74.58    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=16;Dels=0.0;FS=5.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=4.66;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374555    GT:AD:DP:GQ:PL    0/1:11,5:16:99:105,0,381
1    23965704    rs10917403    A    C    1095.70    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.79;DB;DP=84;Dels=0.0;FS=2.997;HRun=0;HaplotypeScore=0.9332;MQ=59.73;MQ0=0;MQRankSum=-0.326;QD=13.04;ReadPosRankSum=-0.106;SNPEFF_AMINO_ACID_CHANGE=N37H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_23965599_23965741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374555    GT:AD:DP:GQ:PL    0/1:48,36:84:99:1126,0,1559
1    23965829    rs10917404    C    T    610.93    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=4.29;DB;DP=42;Dels=0.0;FS=6.332;HRun=0;HaplotypeScore=0.7887;MQ=59.45;MQ0=0;MQRankSum=-0.9;QD=14.55;ReadPosRankSum=-0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374555    GT:AD:DP:GQ:PL    0/1:20,21:42:99:641,0,547
1    23966837    rs1317329    C    T    521.65    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=2.032;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=1.387;QD=15.81;ReadPosRankSum=1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374555    GT:AD:DP:GQ:PL    0/1:14,19:33:99:552,0,407
1    23966894    rs3072132    T    TAAG    950.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.883;DB;DP=34;FS=11.504;HRun=0;HaplotypeScore=126.0392;IndelType=I;MQ=59.28;MQ0=0;MQRankSum=-1.711;QD=27.95;ReadPosRankSum=0.234;SNPEFF_AMINO_ACID_CHANGE=V93VR;SNPEFF_CODON_CHANGE=gta/gtAAGa;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_23966879_23967058;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374555    GT:AD:DP:GQ:PL    0/1:17,17:34:99:989,0,643
1    24018224    rs3753270    C    T    257.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.766;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.442;QD=14.32;ReadPosRankSum=-0.088;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374550    GT:AD:DP:GQ:PL    0/1:9,9:18:99:288,0,314
1    24018277    rs10917413    C    G    876.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_24018269_24018319;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374550    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:910,69,0
1    24018953    rs78796509    T    C    162.26    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=12.48;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374550    GT:AD:DP:GQ:PL    0/1:7,6:13:99:192,0,229
1    24018965    rs79924731    T    G    238.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.372;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=11.92;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374550    GT:AD:DP:GQ:PL    0/1:12,8:20:99:268,0,379
1    24018999    rs114249836    T    C    292.47    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.013;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.356;QD=11.7;ReadPosRankSum=-0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374550    GT:AD:DP:GQ:PL    0/1:14,11:25:99:322,0,492
1    24020470    rs2271996    A    G    87.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2433;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=5.86;ReadPosRankSum=0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467075    GT:AD:DP:GQ:PL    0/1:10,5:15:99:118,0,348
1    24022104    rs10799803    C    T    288.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443624    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
1    24022437    rs2280437    A    G    1329.99    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=91;Dels=0.0;FS=1.733;HRun=1;HaplotypeScore=0.9916;MQ=59.75;MQ0=0;MQRankSum=1.044;QD=14.62;ReadPosRankSum=-0.663;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443624    GT:AD:DP:GQ:PL    0/1:45,46:91:99:1360,0,1371
1    24083649    rs2076346    T    C    349.13    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=26;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=1.9899;MQ=59.11;MQ0=0;MQRankSum=1.496;QD=13.43;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418390    GT:AD:DP:GQ:PL    0/1:12,14:26:99:379,0,437
1    24106510    rs3831910    A    AT    381.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=4;HaplotypeScore=38.1709;IndelType=I;MQ=58.91;MQ0=0;QD=31.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246151    GT:AD:DP:GQ:PL    1/1:1,11:12:33.10:424,33,0
1    24122986    rs760941    C    T    208.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=20.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418277    GT:AD:DP:GQ:PL    1/1:0,9:10:24.01:241,24,0
1    24133612    rs1018396    G    A    5369.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9024;MQ=59.69;MQ0=0;QD=35.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465332    GT:AD:DP:GQ:PL    1/1:0,150:151:99:5370,391,0
1    24134462    rs719399    C    T    160.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465332    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
1    24134721    rs719400    T    C    2486.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.66;MQ0=0;QD=36.56;SNPEFF_AMINO_ACID_CHANGE=L147;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24134625_24134813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436439    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2519,187,0
1    24143932    rs2076344    A    G    848.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8824;MQ=59.14;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374483    GT:AD:DP:GQ:PL    1/1:0,27:27:69.20:882,69,0
1    24200800    rs1105    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    24200903    rs2229586    G    C    750.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;QD=34.1;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:783,60,0
1    24200921    rs2229585    T    C    867.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=57.48;MQ0=0;QD=30.99;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,27:28:69.20:901,69,0
1    24200969    rs2229584    T    C    1731.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.94;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1764,141,0
1    24200983    rs2229583    C    T    1983.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.06;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2017,147,0
1    24201094    rs2229581    G    C    3338.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9169;MQ=59.17;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=T338;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24197016_24202152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,105:106:99:3339,259,0
1    24201109    rs2229580    C    T    3799.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9562;MQ=59.01;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=P333;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24197016_24202152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,112:113:99:3799,277,0
1    24201262    rs2502993    A    G    1471.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=A282;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24197016_24202152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1504,120,0
1    24201357    rs4649124    A    G    1030.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.45;MQ0=0;QD=34.36;SNPEFF_AMINO_ACID_CHANGE=L251;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24197016_24202152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,30:30:81.24:1064,81,0
1    24201448    rs3003336    C    T    1115.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=V220;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24197016_24202152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,34:34:84.28:1148,84,0
1    24201643    rs2501431    G    A    1055.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8823;MQ=58.5;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=G155;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24197016_24202152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,31:31:84.25:1089,84,0
1    24201919    rs2502992    T    C    1954.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.55;MQ0=0;QD=29.18;SNPEFF_AMINO_ACID_CHANGE=Q63;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24197016_24202152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1988,150,0
1    24201920    rs2501432    T    C    1805.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;QD=27.77;SNPEFF_AMINO_ACID_CHANGE=Q63R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24197016_24202152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1838,150,0
1    24202318    rs2502991    A    G    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    24228108    rs4649133    G    A    858.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:892,66,0
1    24228132    rs4649134    G    A    627.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:660,51,0
1    24228206    rs4649135    A    G    664.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=58.89;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374472    GT:AD:DP:GQ:PL    1/1:1,20:21:51.17:697,51,0
1    24298212    rs7522946    C    T    271.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.57;MQ0=10;QD=12.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343255    GT:AD:DP:GQ:PL    1/1:9,13:22:33.03:304,33,0
1    24383819    rs7540491    T    C    479.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330966    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:512,39,0
1    24387822    rs7553075    T    A    184.44    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=7.38;ReadPosRankSum=1.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:18,7:25:99:214,0,604
1    24388371    rs4649168    T    C    513.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:546,42,0
1    24388417    rs11811060    A    G    749.52    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.786;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.49;MQ0=0;MQRankSum=0.921;QD=16.66;ReadPosRankSum=-0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:21,24:45:99:780,0,717
1    24388679    rs3795303    T    C    440.68    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.472;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=15.2;ReadPosRankSum=0.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:11,18:29:99:471,0,373
1    24390717    rs41268127    G    A    148.48    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.5;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:4,5:9:99:178,0,131
1    24392600    rs6682222    G    A    1264.71    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.695;DB;DP=68;Dels=0.0;FS=3.329;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=1.692;QD=18.6;ReadPosRankSum=0.301;SNPEFF_AMINO_ACID_CHANGE=H33;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24392597_24393069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338909    GT:AD:DP:GQ:PL    0/1:27,41:68:99:1295,0,847
1    24392671    rs6699525    T    C    347.12    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.921;QD=18.27;ReadPosRankSum=-1.359;SNPEFF_AMINO_ACID_CHANGE=R10G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24392597_24393069;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338909    GT:AD:DP:GQ:PL    0/1:6,13:19:99:377,0,184
1    24394424    rs7542151    G    A    2079.88    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.38;DB;DP=149;Dels=0.0;FS=5.033;HRun=0;HaplotypeScore=3.95;MQ=59.38;MQ0=0;MQRankSum=1.373;QD=13.96;ReadPosRankSum=-0.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:76,73:149:99:2110,0,2137
1    24394673    rs12125641    C    T    664.57    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=52;Dels=0.0;FS=1.413;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=-0.47;QD=12.78;ReadPosRankSum=1.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:25,26:52:99:695,0,675
1    24394811    rs12145360    A    G    1963.32    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=180;Dels=0.0;FS=5.502;HRun=1;HaplotypeScore=2.6995;MQ=59.72;MQ0=0;MQRankSum=0.491;QD=10.91;ReadPosRankSum=-0.893;SNPEFF_AMINO_ACID_CHANGE=I1066T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24394713_24394857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:102,77:180:99:1993,0,2980
1    24395003    rs6660675    T    G    118.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.184;QD=7.93;ReadPosRankSum=1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:10,5:15:99:149,0,272
1    24400584    rs6660949    G    C    915.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.49;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:948,69,0
1    24400633    rs10903083    C    G    1449    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=49.39;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1482,123,0
1    24406885    rs4649176    C    G    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475306    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    24409165    rs4320728    C    T    517.10    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=45;Dels=0.0;FS=4.288;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.057;QD=11.49;ReadPosRankSum=1.459;SNPEFF_AMINO_ACID_CHANGE=E670;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24409083_24409204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:26,19:45:99:547,0,801
1    24409300    rs56066172    C    T    52.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=8.79;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:3,3:6:82.76:83,0,88
1    24416059    rs4393101    T    C    287.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.72;SNPEFF_AMINO_ACID_CHANGE=D528G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24416028_24416155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:320,24,0
1    24416133    rs4276859    C    T    51.33    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=13;Dels=0.0;FS=2.932;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.606;QD=3.95;ReadPosRankSum=-1.606;SNPEFF_AMINO_ACID_CHANGE=P503;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24416028_24416155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    0/1:10,3:13:81.32:81,0,285
1    24416807    rs12042188    C    T    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    24417415    rs6700245    T    C    1875.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=29.77;SNPEFF_AMINO_ACID_CHANGE=Q435R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24417287_24417486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1909,153,0
1    24434595    rs11249170    T    C    793.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329601    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:826,63,0
1    24447214    rs3795300    G    A    694.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=38.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270800    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:728,54,0
1    24454902    rs79895649    C    T    184.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270800    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:217,18,0
1    24460797    rs17852649    T    G    511.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=58.45;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=P145;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24460701_24460876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270800    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:544,45,0
1    24463359    rs78086250    C    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270800    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    24463417    rs7418238    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270800    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    24483455    rs7522997    G    A    270.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL28RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327575    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:304,24,0
1    24483491    rs7536412    A    G    532.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=33.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL28RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327575    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:566,42,0
1    24484441    rs946671    A    G    628.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL28RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374418    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:661,48,0
1    24485518    rs10751769    T    C    2870.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.74;MQ0=0;QD=31.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL28RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374418    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2904,226,0
1    24485813    rs4649194    T    C    576.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL28RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374418    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:609,51,0
1    24485941    rs4649195    T    C    1562.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL28RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374418    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1595,126,0
1    24657860    rs2486669    A    G    404.01    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.999;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2426;MQ=58.15;MQ0=0;MQRankSum=-0.024;QD=8.42;ReadPosRankSum=0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236255    GT:AD:DP:GQ:PL    0/1:19,29:48:99:434,0,579
1    24658063    rs2486668    C    G    817.17    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.28;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.893;QD=17.02;ReadPosRankSum=1.366;SNPEFF_AMINO_ACID_CHANGE=D55E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24657916_24658102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350501    GT:AD:DP:GQ:PL    0/1:21,27:48:99:847,0,652
1    24668667    rs11576645    C    G    737.46    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.886;DB;DP=59;Dels=0.0;FS=5.324;HRun=0;HaplotypeScore=3.1151;MQ=58.26;MQ0=0;MQRankSum=0.544;QD=12.5;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=V277;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24668605_24668763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342072    GT:AD:DP:GQ:PL    0/1:29,30:59:99:767,0,820
1    24673866    rs6691722    A    G    170.87    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=15.53;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461318    GT:AD:DP:GQ:PL    0/1:4,7:11:99:201,0,131
1    24687058    rs11581149    C    G    284.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.062;QD=18.96;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003583    GT:AD:DP:GQ:PL    0/1:6,9:15:99:314,0,191
1    24690894    rs74060321    C    T    175.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=14;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=12.54;ReadPosRankSum=-1.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374404    GT:AD:DP:GQ:PL    0/1:8,6:14:99:206,0,200
1    24706113    rs3765428    G    A    390    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.11;MQ0=0;MQRankSum=-1.061;QD=15.0;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003583    GT:AD:DP:GQ:PL    0/1:12,13:26:99:420,0,394
1    24706269    rs1064842    A    G    546.66    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.665;DB;DP=36;Dels=0.0;FS=6.276;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.204;QD=15.19;ReadPosRankSum=0.063;SNPEFF_AMINO_ACID_CHANGE=N112;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24706143_24706313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337248    GT:AD:DP:GQ:PL    0/1:17,19:36:99:577,0,571
1    24706292    rs1142057    T    C    379.01    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.42;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=15.16;ReadPosRankSum=-0.082;SNPEFF_AMINO_ACID_CHANGE=I105V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24706143_24706313;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337248    GT:AD:DP:GQ:PL    0/1:12,13:25:99:409,0,414
1    24706410    rs3765431    T    C    31.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003583    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
1    24718075    rs2294520    T    C    829.58    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=0.128;DB;DP=66;Dels=0.0;FS=3.677;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.257;QD=12.57;ReadPosRankSum=3.006;SNPEFF_AMINO_ACID_CHANGE=Q55;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24718051_24718169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337248    GT:AD:DP:GQ:PL    0/1:35,31:66:99:860,0,1112
1    24718318    rs112194829    T    TA    119.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=37.8948;IndelType=I;MQ=61.78;MQ0=0;MQRankSum=0.825;QD=10.0;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003583    GT:AD:DP:GQ:PL    0/1:6,6:12:89.89:159,0,90
1    24727678    rs2078445    C    T    137.65    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9929;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003583    GT:AD:DP:GQ:PL    0/1:1,5:7:20.53:168,0,21
1    24746205    rs12125143    C    T    96.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=9.64;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003912    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,217
1    24768778    rs4648863    G    C    434.38    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=23;Dels=0.0;FS=2.817;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.762;QD=18.89;ReadPosRankSum=0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003912    GT:AD:DP:GQ:PL    0/1:7,16:23:99:464,0,231
1    24784139    rs10903089    A    G    214.71    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;MQRankSum=2.106;QD=11.3;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358028    GT:AD:DP:GQ:PL    0/1:11,8:19:99:245,0,372
1    24784197    rs195718    T    C    241.19    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.505;QD=9.28;ReadPosRankSum=0.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358028    GT:AD:DP:GQ:PL    0/1:15,11:26:99:271,0,454
1    24785393    rs2272935    C    T    402.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.126;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.126;QD=14.39;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=A181;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24785378_24785466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000003912    GT:AD:DP:GQ:PL    0/1:14,14:28:99:433,0,494
1    24792617    rs195725    T    A    502.71    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.578;DB;DP=41;Dels=0.0;FS=1.571;HRun=1;HaplotypeScore=0.9995;MQ=59.54;MQ0=0;MQRankSum=0.535;QD=12.26;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003912    GT:AD:DP:GQ:PL    0/1:21,20:41:99:533,0,669
1    24840768    rs196403    G    A    298.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=24.87;ReadPosRankSum=1.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCAN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374395    GT:AD:DP:GQ:PL    0/1:3,9:12:44.79:328,0,45
1    24859617    rs196429    G    A    371.23    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=24;Dels=0.0;FS=1.999;HRun=0;HaplotypeScore=0.9832;MQ=57.05;MQ0=0;MQRankSum=0.785;QD=15.47;ReadPosRankSum=-1.399;SNPEFF_AMINO_ACID_CHANGE=P128;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24859603_24859744;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCAN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436717    GT:AD:DP:GQ:PL    0/1:8,14:24:99:401,0,206
1    24859665    rs196430    G    A    845.94    PASS    AB=0.237;AC=1;AF=0.50;AN=2;BaseQRankSum=1.611;DB;DP=38;Dels=0.0;FS=1.535;HRun=0;HaplotypeScore=0.5784;MQ=59.39;MQ0=0;MQRankSum=-0.867;QD=22.26;ReadPosRankSum=-0.69;SNPEFF_AMINO_ACID_CHANGE=P144;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24859603_24859744;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCAN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436717    GT:AD:DP:GQ:PL    0/1:9,29:38:99:876,0,213
1    24861704    rs196432    G    A    1351.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.45;MQ0=0;QD=32.17;SNPEFF_AMINO_ACID_CHANGE=R106Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_24861583_24861769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCAN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374393    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1384,105,0
1    24978892    rs60568839    CA    C    40.86    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=19;FS=0.0;HRun=16;HaplotypeScore=133.2064;IndelType=D;MQ=54.95;MQ0=0;MQRankSum=1.164;QD=2.15;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462710    GT:AD:DP:GQ:PL    0/1:10,7:19:79.89:80,0,121
1    24987299    rs145732567    G    T    1943.20    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=4.41;DB;DP=119;Dels=0.0;FS=4.574;HRun=3;HaplotypeScore=3.936;MQ=59.42;MQ0=0;MQRankSum=-0.233;QD=16.33;ReadPosRankSum=-0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323848    GT:AD:DP:GQ:PL    0/1:45,74:119:99:1973,0,1171
1    24989762    rs4649011    G    T    1135.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485541    GT:AD:DP:GQ:PL    1/1:0,37:37:90.29:1168,90,0
1    25140825    rs3890756    A    G    550.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374379    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:583,42,0
1    25153692    rs4649022    G    A    923.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374379    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:957,72,0
1    25254317    rs7517302    C    T    473.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.028;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=18.93;ReadPosRankSum=0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479341    GT:AD:DP:GQ:PL    0/1:10,15:25:99:503,0,314
1    25256444    rs71514255    G    A    33.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338888    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:63,0,32
1    25291010    rs6672420    A    T    163    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=14.82;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=I18N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_25291005_25291159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338888    GT:AD:DP:GQ:PL    0/1:4,7:11:99:193,0,135
1    25570081    rs1043879    T    C    413.06    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.677;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.062;QD=9.61;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=E239G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_25570041_25570124;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243189    GT:AD:DP:GQ:PL    0/1:25,18:43:99:443,0,796
1    25611035    rs2301153    G    C    762.17    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=2.538;DB;DP=40;Dels=0.0;FS=6.476;HRun=1;HaplotypeScore=0.7887;MQ=53.2;MQ0=0;MQRankSum=-0.326;QD=19.05;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328664    GT:AD:DP:GQ:PL    0/1:14,26:40:99:792,0,374
1    25617399    rs28521909    T    C    197.78    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.986;MQ=55.62;MQ0=0;MQRankSum=0.747;QD=21.98;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328664    GT:AD:DP:GQ:PL    0/1:1,8:9:3.62:227,0,4
1    25617406    rs28562109    G    A    137.05    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9866;MQ=54.31;MQ0=0;MQRankSum=0.736;QD=19.58;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328664    GT:AD:DP:GQ:PL    0/1:1,6:7:9.61:167,0,10
1    25634205    rs2257611    G    A    622.56    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.039;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.79;MQ0=0;MQRankSum=0.431;QD=15.18;ReadPosRankSum=1.608;SNPEFF_AMINO_ACID_CHANGE=V381M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_25634138_25634307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342055    GT:AD:DP:GQ:PL    0/1:19,22:41:99:653,0,539
1    25648349    rs28669938    T    C    890.64    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=0.485;DB;DP=48;Dels=0.0;FS=1.436;HRun=1;HaplotypeScore=0.0;MQ=58.7;MQ0=0;MQRankSum=0.105;QD=18.56;ReadPosRankSum=-2.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328664    GT:AD:DP:GQ:PL    0/1:19,29:48:99:921,0,553
1    25678238    rs3093616    T    A    827.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=58.99;MQ0=0;QD=35.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM50A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487234    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:860,63,0
1    25717139    rs636889    C    T    143.79    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9924;MQ=44.37;MQ0=0;MQRankSum=0.0;QD=13.07;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243186    GT:AD:DP:GQ:PL    0/1:4,7:11:99:174,0,104
1    25717365    rs609320    C    G    2137.15    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.072;DB;DP=120;Dels=0.0;FS=7.113;HRun=1;HaplotypeScore=0.7887;MQ=52.51;MQ0=0;MQRankSum=-1.179;QD=17.81;ReadPosRankSum=-0.545;SNPEFF_AMINO_ACID_CHANGE=A168P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_25717240_25717380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHCE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539650    GT:AD:DP:GQ:PL    0/1:51,69:120:99:2167,0,1549
1    25747230    rs586178    G    C    99.12    QDFilter2    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=61;Dels=0.0;FS=4.884;HRun=1;HaplotypeScore=0.0;MQ=40.74;MQ0=10;MQRankSum=-2.399;QD=1.62;ReadPosRankSum=0.985;SNPEFF_AMINO_ACID_CHANGE=C16W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_25747130_25747363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHCE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243186    GT:AD:DP:GQ:PL    0/1:42,19:61:99:129,0,1281
1    25747399    rs2072931    G    T    35.62    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.95;MQ0=1;MQRankSum=1.231;QD=5.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349320    GT:AD:DP:GQ:PL    0/1:4,2:6:65.61:66,0,92
1    25780668    rs34006994    C    T    290.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=16.13;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374343    GT:AD:DP:GQ:PL    0/1:9,9:18:99:320,0,322
1    25780889    .    A    ATG    222.19    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=3.518;DP=26;FS=3.757;HRun=0;HaplotypeScore=154.7122;IndelType=I;MQ=59.48;MQ0=0;MQRankSum=1.386;QD=8.55;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374343    GT:AD:DP:GQ:PL    0/1:18,8:26:99:261,0,417
1    25783066    rs35497030    A    G    104.92    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.172;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.586;QD=6.56;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374343    GT:AD:DP:GQ:PL    0/1:11,5:16:99:135,0,406
1    25785451    rs35530120    A    G    519.27    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.998;DB;DP=29;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.509;QD=17.91;ReadPosRankSum=0.812;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470035    GT:AD:DP:GQ:PL    0/1:13,16:29:99:549,0,361
1    25810416    rs61775192    A    G    53.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=10.76;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374343    GT:AD:DP:GQ:PL    0/1:2,3:5:67.97:84,0,68
1    25817705    rs35343405    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374343    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    25870018    rs61776820    C    G    36.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.24;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374338    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
1    25889422    rs12096438    C    T    299    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=15;Dels=0.0;FS=2.796;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.766;QD=19.93;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374338    GT:AD:DP:GQ:PL    0/1:6,9:15:99:329,0,201
1    25889632    rs6687605    T    C    368.17    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=25;Dels=0.0;FS=4.678;HRun=5;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.505;QD=14.73;ReadPosRankSum=-0.465;SNPEFF_AMINO_ACID_CHANGE=S202P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_25889561_25889644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374338    GT:AD:DP:GQ:PL    0/1:11,14:25:99:398,0,343
1    25889672    rs6688931    G    A    283.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=12;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-2.589;QD=23.65;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374338    GT:AD:DP:GQ:PL    0/1:3,9:12:52.90:314,0,53
1    25890050    rs6661159    A    G    38.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.47;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374338    GT:AD:DP:GQ:PL    0/1:3,4:7:68.30:68,0,111
1    25890189    rs28969504    A    G    241.08    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.132;DB;DP=23;Dels=0.0;FS=4.018;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=10.48;ReadPosRankSum=0.099;SNPEFF_AMINO_ACID_CHANGE=T218;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_25890152_25890282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374338    GT:AD:DP:GQ:PL    0/1:13,10:23:99:271,0,393
1    25893221    rs4523506    G    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374338    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:70,0,27
1    26085048    rs11321223    AG    A    126.59    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=2.774;DB;DP=20;FS=4.834;HRun=6;HaplotypeScore=49.1327;IndelType=D;MQ=61.07;MQ0=0;MQRankSum=1.189;QD=6.33;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263979    GT:AD:DP:GQ:PL    0/1:13,7:20:99:166,0,447
1    26098107    rs2072747    G    A    416.11    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.115;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.076;QD=10.95;ReadPosRankSum=-1.808;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263979    GT:AD:DP:GQ:PL    0/1:20,18:38:99:446,0,507
1    26098333    rs807264    G    A    764.13    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.012;DB;DP=43;Dels=0.0;FS=3.025;HRun=0;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=-0.379;QD=17.77;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263979    GT:AD:DP:GQ:PL    0/1:19,24:43:99:794,0,634
1    26109237    rs12567324    A    G    479.07    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=41;Dels=0.0;FS=2.519;HRun=3;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.728;QD=11.68;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496532    GT:AD:DP:GQ:PL    0/1:24,17:41:99:509,0,812
1    26109307    rs2072746    G    C    95.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=11.92;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496532    GT:AD:DP:GQ:PL    0/1:3,5:8:94.48:125,0,94
1    26110065    rs3820514    A    G    328.46    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.902;DB;DP=29;Dels=0.0;FS=9.932;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.322;QD=11.33;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496532    GT:AD:DP:GQ:PL    0/1:15,13:29:99:358,0,465
1    26110143    rs3767877    G    A    666.35    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=3.66;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.63;MQ0=0;MQRankSum=-0.748;QD=13.33;ReadPosRankSum=-0.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496532    GT:AD:DP:GQ:PL    0/1:26,24:50:99:696,0,638
1    26127425    rs6659086    G    A    62.79    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=2.73;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=6.28;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354177    GT:AD:DP:GQ:PL    0/1:7,3:10:92.79:93,0,236
1    26129438    rs7549097    G    T    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354177    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    26131459    rs11247735    G    A    416.29    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.47;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=32.02;ReadPosRankSum=-1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354177    GT:AD:DP:GQ:PL    0/1:1,12:13:3.52:445,0,4
1    26131654    rs7349185    G    A    221.95    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.624;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=-1.029;QD=4.53;ReadPosRankSum=-1.672;SNPEFF_AMINO_ACID_CHANGE=C108Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26131633_26131766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354177    GT:AD:DP:GQ:PL    0/1:33,15:49:99:252,0,1057
1    26138136    rs760598    C    A    491.35    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.14;MQ0=0;MQRankSum=0.0;QD=18.2;ReadPosRankSum=2.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354177    GT:AD:DP:GQ:PL    0/1:12,15:27:99:521,0,354
1    26138262    rs760597    T    C    199.63    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=14;Dels=0.0;FS=9.89;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=14.26;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=P357;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26138182_26138370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354177    GT:AD:DP:GQ:PL    0/1:6,7:14:99:230,0,208
1    26139137    rs10902685    C    T    58.11    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.754;QD=7.26;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354177    GT:AD:DP:GQ:PL    0/1:5,3:8:88.10:88,0,94
1    26140573    rs2294228    C    A    540.06    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.486;QD=11.25;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=N468K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26140568_26140669;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354177    GT:AD:DP:GQ:PL    0/1:26,22:48:99:570,0,895
1    26150023    rs11247758    C    T    570.65    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.218;DB;DP=32;Dels=0.0;FS=5.506;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.218;QD=17.83;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM54B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374300    GT:AD:DP:GQ:PL    0/1:11,21:32:99:601,0,334
1    26152758    rs6598924    A    G    230.84    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.964;DB;DP=16;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=-1.588;QD=14.43;ReadPosRankSum=1.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM54B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494293    GT:AD:DP:GQ:PL    0/1:7,9:16:99:261,0,204
1    26158337    rs1961580    C    T    411.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.364;QD=14.68;ReadPosRankSum=-0.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374298    GT:AD:DP:GQ:PL    0/1:14,14:28:99:441,0,490
1    26310213    rs2275101    T    C    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439092    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
1    26310394    rs2275102    A    G    2644.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439092    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2677,214,0
1    26310836    rs3738458    G    T    172.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374282    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:205,15,0
1    26314564    rs2245979    T    C    723.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374282    GT:AD:DP:GQ:PL    1/1:0,19:19:57.16:757,57,0
1    26357656    rs2736831    C    A    2477.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_AMINO_ACID_CHANGE=H379N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26357623_26357755;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374280    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2511,193,0
1    26357855    rs2802321    A    G    443.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374280    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:477,36,0
1    26365549    rs2997452    C    T    240.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374280    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
1    26370164    rs11585142    G    A    163.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374276    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
1    26371788    rs3121763    G    A    355.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374276    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:389,30,0
1    26372144    rs6686190    A    G    122.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374276    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
1    26372605    rs6672177    G    C    34.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374278    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
1    26508538    rs114806650    C    T    184.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.36;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465415    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,167
1    26509900    rs147478341    G    A    576.60    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=41;Dels=0.0;FS=1.777;HRun=0;HaplotypeScore=0.9332;MQ=59.44;MQ0=0;MQRankSum=-1.242;QD=14.06;ReadPosRankSum=-0.641;SNPEFF_AMINO_ACID_CHANGE=V250M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26509837_26509905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361530    GT:AD:DP:GQ:PL    0/1:22,19:41:99:607,0,695
1    26510310    .    AC    A    142.67    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.15;DP=25;FS=0.0;HRun=7;HaplotypeScore=115.2425;IndelType=D;MQ=58.13;MQ0=0;MQRankSum=0.833;QD=5.71;ReadPosRankSum=0.253;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_26510220_26510321;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000361530    GT:AD:DP:GQ:PL    0/1:17,8:25:99:182,0,428
1    26510336    rs115982258    C    T    370.35    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.823;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=58.89;MQ0=0;MQRankSum=-0.317;QD=17.64;ReadPosRankSum=2.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465415    GT:AD:DP:GQ:PL    0/1:7,13:21:99:400,0,163
1    26515956    rs1045105    C    A    564.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.138;DB;DP=70;Dels=0.0;FS=3.397;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.078;QD=8.06;ReadPosRankSum=-0.078;SNPEFF_AMINO_ACID_CHANGE=H429N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26515770_26516337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531191    GT:AD:DP:GQ:PL    0/1:42,28:70:99:594,0,1278
1    26517667    rs11247864    T    C    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361530    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,72
1    26524016    rs10902719    T    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    26524706    rs9970046    A    G    6505.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=189;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7206;MQ=59.39;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    1/1:0,189:189:99:6505,481,0
1    26527255    rs12145714    G    A    189.20    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=53.03;MQ0=0;MQRankSum=0.471;QD=13.51;ReadPosRankSum=-0.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    0/1:6,8:14:99:219,0,155
1    26527260    rs12120359    A    G    160.24    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=53.52;MQ0=0;MQRankSum=0.0;QD=10.68;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    0/1:7,8:15:99:190,0,196
1    26527304    rs12121284    T    C    450.10    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.293;QD=16.67;ReadPosRankSum=-1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    0/1:12,15:27:99:480,0,339
1    26527310    rs12118976    C    G    384.33    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.412;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.48;MQ0=0;MQRankSum=-3.134;QD=13.73;ReadPosRankSum=-1.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    0/1:12,16:28:99:414,0,351
1    26527699    rs869139    T    C    31.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=7.98;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    0/1:2,2:4:60.71:62,0,61
1    26527863    rs17163674    C    T    412.80    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.509;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7479;MQ=59.12;MQ0=0;MQRankSum=0.178;QD=11.16;ReadPosRankSum=1.152;SNPEFF_AMINO_ACID_CHANGE=R406;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26527845_26528094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    0/1:22,15:37:99:443,0,636
1    26527951    rs6657616    G    A    920.07    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.622;QD=15.86;ReadPosRankSum=0.267;SNPEFF_AMINO_ACID_CHANGE=D436N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26527845_26528094;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    0/1:24,34:58:99:950,0,688
1    26528922    rs10902720    C    G    167.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
1    26529061    rs114100693    G    A    112.88    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=16.13;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338855    GT:AD:DP:GQ:PL    0/1:1,6:7:21.08:143,0,21
1    26583998    rs4659417    T    C    2865.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480446    GT:AD:DP:GQ:PL    1/1:0,91:92:99:2898,226,0
1    26596080    rs7550997    G    A    335.99    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=-0.669;QD=10.18;ReadPosRankSum=0.142;SNPEFF_AMINO_ACID_CHANGE=A491T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26595951_26596105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451429    GT:AD:DP:GQ:PL    0/1:19,14:33:99:366,0,635
1    26597435    rs4659419    G    A    723.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252992    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:756,57,0
1    26597673    rs11247894    G    A    505.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252992    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:538,39,0
1    26603993    rs3820519    A    C    69.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491670    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:101,9,0
1    26608761    rs12354062    C    T    62.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.36;MQ0=0;MQRankSum=-1.38;QD=8.92;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252992    GT:AD:DP:GQ:PL    0/1:3,4:7:64.86:92,0,65
1    26608814    rs6672357    A    G    221.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=24.64;SNPEFF_AMINO_ACID_CHANGE=P270;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26608773_26609060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374223    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:255,24,0
1    26608867    rs193142354    C    A    86.04    MQFilter40;SnpCluster    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.113;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.8797;MQ=32.24;MQ0=0;MQRankSum=1.304;QD=3.44;ReadPosRankSum=-3.277;SNPEFF_AMINO_ACID_CHANGE=G253C;SNPEFF_CODON_CHANGE=Ggt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26608773_26609060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374223    GT:AD:DP:GQ:PL    0/1:19,6:25:99:116,0,359
1    26608873    rs1134583    T    A    124.22    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=25;Dels=0.0;FS=10.887;HRun=0;HaplotypeScore=35.9835;MQ=32.24;MQ0=0;MQRankSum=1.115;QD=4.97;ReadPosRankSum=1.713;SNPEFF_AMINO_ACID_CHANGE=S251C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26608773_26609060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374223    GT:AD:DP:GQ:PL    0/1:13,12:25:99:154,0,317
1    26608877    rs140364749    GCCGGGA    G    1301.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=399.7732;IndelType=D;MQ=33.74;MQ0=0;QD=50.07;SNPEFF_AMINO_ACID_CHANGE=GPG247G;SNPEFF_CODON_CHANGE=ggtcccggc/ggc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_1_26608773_26609060;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374223    GT:AD:DP:GQ:PL    1/1:21,5:26:73.78:1344,74,0
1    26608877    rs1134582    G    A    116.78    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.584;DB;DP=26;Dels=0.0;FS=10.307;HRun=0;HaplotypeScore=35.9835;MQ=33.74;MQ0=0;MQRankSum=-0.462;QD=4.49;ReadPosRankSum=1.441;SNPEFF_AMINO_ACID_CHANGE=G249;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26608773_26609060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374223    GT:AD:DP:GQ:PL    0/1:13,13:26:99:147,0,286
1    26608889    .    ACC    A    217.71    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.335;DP=27;FS=2.481;HRun=2;HaplotypeScore=424.3852;IndelType=D;MQ=33.57;MQ0=0;MQRankSum=-3.062;QD=8.06;ReadPosRankSum=-0.467;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_26607819_26609060;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000314675    GT:AD:DP:GQ:PL    0/1:19,8:27:99:257,0,142
1    26608892    .    GGGAC    G    369.85    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DP=30;FS=8.239;HRun=0;HaplotypeScore=461.7062;IndelType=D;MQ=35.81;MQ0=0;MQRankSum=-1.942;QD=12.33;ReadPosRankSum=0.983;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_26607819_26609060;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000314675    GT:AD:DP:GQ:PL    0/1:22,8:30:99:409,0,130
1    26609093    rs72872912    A    T    602.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.628;DB;DP=45;Dels=0.0;FS=4.291;HRun=0;HaplotypeScore=2.1101;MQ=56.31;MQ0=0;MQRankSum=0.468;QD=13.4;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252992    GT:AD:DP:GQ:PL    0/1:25,20:45:99:633,0,816
1    26609307    rs6598952    G    T    1522.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=31.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252992    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1556,120,0
1    26610891    rs4332350    A    C    959.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=L192R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26610853_26610973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314675    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:993,81,0
1    26612042    rs11247898    A    G    565.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270792    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:599,48,0
1    26612297    rs11579630    C    A    192.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.45;MQ0=0;MQRankSum=-0.865;QD=12.83;ReadPosRankSum=0.965;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270792    GT:AD:DP:GQ:PL    0/1:6,9:15:99:222,0,164
1    26612460    rs11247900    G    A    483.61    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.707;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.38;MQ0=0;MQRankSum=0.949;QD=13.07;ReadPosRankSum=0.88;SNPEFF_AMINO_ACID_CHANGE=L135;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26612314_26612528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436301    GT:AD:DP:GQ:PL    0/1:17,19:37:99:514,0,492
1    26620489    rs3732416    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421827    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    26620846    rs3832184    C    CA    1812.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=96.5742;IndelType=I;MQ=60.28;MQ0=0;QD=46.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421827    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1855,117,0
1    26624327    rs4290051    G    A    216.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314675    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
1    26627283    rs4291487    A    G    125.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=17.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314675    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:158,15,0
1    26627478    rs2276712    T    C    740.27    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.634;DB;DP=67;Dels=0.0;FS=18.881;HRun=1;HaplotypeScore=4.9066;MQ=57.19;MQ0=0;MQRankSum=-1.013;QD=11.05;ReadPosRankSum=-1.216;SNPEFF_AMINO_ACID_CHANGE=S46;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26627417_26627515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314675    GT:AD:DP:GQ:PL    0/1:28,37:67:99:770,0,837
1    26644399    rs41285347    C    T    348.23    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.817;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.042;QD=18.33;ReadPosRankSum=0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308182    GT:AD:DP:GQ:PL    0/1:7,12:19:99:378,0,229
1    26644698    rs12090258    C    T    69.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.64;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308182    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,101
1    26646574    rs112252579    G    A    192.61    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.101;QD=14.82;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308182    GT:AD:DP:GQ:PL    0/1:6,7:13:99:223,0,199
1    26646726    rs1071849    A    G    745.36    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.327;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.43;MQ0=0;MQRankSum=0.88;QD=11.65;ReadPosRankSum=-1.164;SNPEFF_AMINO_ACID_CHANGE=N40S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26646662_26647014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374213    GT:AD:DP:GQ:PL    0/1:36,28:64:99:775,0,1016
1    26646730    rs17645    A    G    703.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.371;DB;DP=63;Dels=0.0;FS=1.018;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=2.059;QD=11.16;ReadPosRankSum=-1.434;SNPEFF_AMINO_ACID_CHANGE=I41M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26646662_26647014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374213    GT:AD:DP:GQ:PL    0/1:35,28:63:99:733,0,1032
1    26648381    rs17163868    C    T    106.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374208    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:139,12,0
1    26648551    rs11247913    G    C    774.13    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.309;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=-0.291;QD=15.18;ReadPosRankSum=1.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374213    GT:AD:DP:GQ:PL    0/1:26,25:51:99:804,0,788
1    26648826    rs60799739    G    A    437.78    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=31;Dels=0.0;FS=3.114;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=14.12;ReadPosRankSum=0.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374213    GT:AD:DP:GQ:PL    0/1:14,17:31:99:468,0,504
1    26648838    rs11247914    G    T    458.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=28;Dels=0.0;FS=6.185;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-2.274;QD=16.37;ReadPosRankSum=-1.677;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374213    GT:AD:DP:GQ:PL    0/1:14,14:28:99:488,0,408
1    26650550    rs11247915    C    A    192.60    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.794;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=12.84;ReadPosRankSum=0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520372    GT:AD:DP:GQ:PL    0/1:8,7:15:99:223,0,282
1    26654937    rs11589684    G    C    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520372    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
1    26655208    rs11247916    C    T    2873.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2054;MQ=59.8;MQ0=0;MQRankSum=0.603;QD=31.58;ReadPosRankSum=0.487;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522923    GT:AD:DP:GQ:PL    1/1:1,90:91:99:2907,223,0
1    26655462    rs12057290    C    T    334.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.69;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522923    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:368,30,0
1    26655507    rs11247917    C    A    224.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=32.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522923    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:257,21,0
1    26657685    rs4659372    C    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    26662774    rs7517559    C    T    232.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522993    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:266,21,0
1    26663362    rs10751735    C    T    234.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=26.03;SNPEFF_AMINO_ACID_CHANGE=S249N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26663332_26663471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308182    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:267,21,0
1    26664916    rs141805601    G    T    342.26    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=48;Dels=0.0;FS=2.988;HRun=2;HaplotypeScore=0.734;MQ=59.52;MQ0=0;MQRankSum=1.554;QD=7.13;ReadPosRankSum=0.987;SNPEFF_AMINO_ACID_CHANGE=P259T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26664842_26664968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527815    GT:AD:DP:GQ:PL    0/1:34,14:48:99:372,0,1120
1    26664968    rs11247919    C    T    1213.53    PASS    AB=0.317;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.477;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9945;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=19.89;ReadPosRankSum=0.556;SNPEFF_AMINO_ACID_CHANGE=L241;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26664842_26664968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527815    GT:AD:DP:GQ:PL    0/1:19,41:61:99:1244,0,505
1    26665991    rs6675432    C    G    254.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374207    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
1    26671084    rs12562454    G    T    250.11    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.766;DB;DP=20;Dels=0.0;FS=4.32;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.372;QD=12.51;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475866    GT:AD:DP:GQ:PL    0/1:8,12:20:99:280,0,248
1    26673076    rs11247924    G    A    58.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.54;ReadPosRankSum=-0.573;SNPEFF_AMINO_ACID_CHANGE=R25W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26671751_26673203;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000475866    GT:AD:DP:GQ:PL    0/1:6,3:9:88.86:89,0,119
1    26673108    rs11247925    C    T    33.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.68;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=R14Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26673104_26673148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449629    GT:AD:DP:GQ:PL    0/1:3,2:5:63.40:63,0,93
1    26688181    rs11583897    G    C    1894.87    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=203;Dels=0.0;FS=8.369;HRun=3;HaplotypeScore=5.0928;MQ=59.77;MQ0=0;MQRankSum=0.325;QD=9.33;ReadPosRankSum=-1.798;SNPEFF_AMINO_ACID_CHANGE=A492;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26688128_26688513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    0/1:117,85:203:99:1925,0,3446
1    26690864    rs7534104    G    T    314.31    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=24.18;ReadPosRankSum=-0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416125    GT:AD:DP:GQ:PL    0/1:3,10:13:66.80:344,0,67
1    26694245    rs10794531    T    C    228.31    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.905;DB;DP=16;Dels=0.0;FS=12.208;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=14.27;ReadPosRankSum=-1.164;SNPEFF_AMINO_ACID_CHANGE=H53R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26694084_26694288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    0/1:7,9:16:99:258,0,205
1    26694260    rs10794532    T    C    185.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=14;Dels=0.0;FS=16.782;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=13.28;ReadPosRankSum=-0.865;SNPEFF_AMINO_ACID_CHANGE=D48G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26694084_26694288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    0/1:6,8:14:99:216,0,164
1    26695295    rs6694289    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    26698884    rs11247936    T    C    147.11    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=13.37;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    0/1:6,5:11:99:177,0,214
1    26698938    rs6703878    A    G    374.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.88;QD=13.37;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    0/1:16,12:28:99:404,0,579
1    26699103    rs11584185    T    C    732.56    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.095;DB;DP=45;Dels=0.0;FS=8.033;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.537;QD=16.28;ReadPosRankSum=0.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    0/1:20,25:45:99:763,0,623
1    26699157    rs11247937    T    C    173.77    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=11.58;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    0/1:8,7:15:99:204,0,235
1    26700795    rs7520030    T    C    1270.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF683;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349618    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1304,99,0
1    26752992    rs4659441    T    C    207.27    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DB;DP=15;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=13.82;ReadPosRankSum=-0.209;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN28A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254231    GT:AD:DP:GQ:PL    0/1:7,8:15:99:237,0,236
1    26800490    rs114289390    C    T    497.25    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.559;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.861;QD=16.58;ReadPosRankSum=-1.506;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DHDDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236342    GT:AD:DP:GQ:PL    0/1:11,19:30:99:527,0,376
1    26801229    rs72651510    C    A    153.17    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.964;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=9.57;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DHDDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360009    GT:AD:DP:GQ:PL    0/1:7,9:16:99:183,0,252
1    26801762    .    G    T    74.87    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=48.25;MQ0=0;MQRankSum=-0.227;QD=4.68;ReadPosRankSum=2.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DHDDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360009    GT:AD:DP:GQ:PL    0/1:11,5:16:95.31:105,0,95
1    26873245    rs2278978    A    G    73.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=24.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374162    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
1    26879792    rs4970489    T    C    955.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.11;MQ0=0;QD=36.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524436    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:989,75,0
1    26879920    rs4970490    T    C    2055.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.14;SNPEFF_AMINO_ACID_CHANGE=A153;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26879882_26879988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530003    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2088,159,0
1    26900428    rs72203886    C    CA    134.72    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=13;FS=0.0;HRun=13;HaplotypeScore=40.7123;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=-0.289;QD=10.36;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374164    GT:AD:DP:GQ:PL    0/1:5,7:13:46.46:174,0,46
1    26900708    rs2229714    G    A    675.11    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=52;Dels=0.0;FS=9.174;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.713;QD=12.98;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374164    GT:AD:DP:GQ:PL    0/1:28,24:52:99:705,0,793
1    26900735    rs282179    C    G    1353.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374164    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1386,105,0
1    26900805    rs12121702    G    A    386.98    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.739;DB;DP=41;Dels=0.0;FS=1.457;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-0.923;QD=9.44;ReadPosRankSum=-1.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374164    GT:AD:DP:GQ:PL    0/1:26,14:41:99:417,0,749
1    26900920    rs12118436    A    T    595.55    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.003;DB;DP=61;Dels=0.0;FS=9.999;HRun=0;HaplotypeScore=2.6834;MQ=59.62;MQ0=0;MQRankSum=-1.149;QD=9.76;ReadPosRankSum=1.019;SNPEFF_AMINO_ACID_CHANGE=N112Y;SNPEFF_CODON_CHANGE=Aac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_26900868_26901225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438977    GT:AD:DP:GQ:PL    0/1:39,22:61:99:626,0,994
1    27057621    rs41303629    A    C    1215.26    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.709;DB;DP=95;Dels=0.0;FS=2.219;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.597;QD=12.79;ReadPosRankSum=-1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324856    GT:AD:DP:GQ:PL    0/1:49,46:95:99:1245,0,1671
1    27089446    rs34681611    G    C    156.21    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.806;DB;DP=22;Dels=0.0;FS=5.348;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=7.1;ReadPosRankSum=0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324856    GT:AD:DP:GQ:PL    0/1:16,6:22:99:186,0,587
1    27100243    rs35428899    C    T    2196.90    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.019;DB;DP=142;Dels=0.0;FS=2.485;HRun=1;HaplotypeScore=0.0;MQ=59.91;MQ0=0;MQRankSum=0.443;QD=15.47;ReadPosRankSum=-1.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324856    GT:AD:DP:GQ:PL    0/1:70,72:142:99:2227,0,2177
1    27107263    rs3841356    T    TC    244.81    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.222;DB;DP=35;FS=3.492;HRun=9;HaplotypeScore=118.5723;IndelType=I;MQ=59.3;MQ0=0;MQRankSum=0.765;QD=6.99;ReadPosRankSum=-0.814;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374152    GT:AD:DP:GQ:PL    0/1:22,13:35:99:284,0,335
1    27158844    rs34924059    G    T    937.38    PASS    AB=0.327;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.375;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.949;QD=19.13;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374141    GT:AD:DP:GQ:PL    0/1:16,33:49:99:967,0,459
1    27174966    rs17162311    A    G    244.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9916;MQ=58.71;MQ0=0;MQRankSum=-0.529;QD=13.57;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374141    GT:AD:DP:GQ:PL    0/1:9,9:18:99:274,0,314
1    27190324    rs11542704    C    T    705.55    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.915;DB;DP=59;Dels=0.0;FS=3.642;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.195;QD=11.96;ReadPosRankSum=-0.539;SNPEFF_AMINO_ACID_CHANGE=T175;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27190055_27190450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538651    GT:AD:DP:GQ:PL    0/1:32,27:59:99:736,0,959
1    27210721    rs3170660    T    C    942.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=R264G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27210651_27210781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374135    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:975,81,0
1    27212239    rs35866833    T    C    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.19;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361720    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:63,0,70
1    27215784    rs910048    C    T    72.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361720    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
1    27220019    .    GC    G    79.40    QDFilter2    AB=0.905;AC=1;AF=0.50;AN=2;BaseQRankSum=4.482;DP=76;FS=0.0;HRun=1;HaplotypeScore=751.2708;IndelType=D;MQ=47.51;MQ0=0;MQRankSum=-5.687;QD=1.04;ReadPosRankSum=-0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361720    GT:AD:DP:GQ:PL    0/1:64,5:76:99:118,0,835
1    27220521    rs11810321    T    G    98.18    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=14.03;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361720    GT:AD:DP:GQ:PL    0/1:2,5:7:64.94:128,0,65
1    27239920    rs6659176    C    G    243.94    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.234;DB;DP=36;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=0.9332;MQ=59.36;MQ0=0;MQRankSum=-0.534;QD=6.78;ReadPosRankSum=-0.203;SNPEFF_AMINO_ACID_CHANGE=G171A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27239900_27240457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR0B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254227    GT:AD:DP:GQ:PL    0/1:22,14:36:99:274,0,642
1    27248283    rs11538549    C    G    67.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435827    GT:AD:DP:GQ:PL    1/1:0,3:3:9:99,9,0
1    27248440    rs35108146    C    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321265    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    27248645    rs10493037    A    G    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321265    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    27272600    rs140706431    A    ATCT    1626.07    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.981;DB;DP=50;FS=2.866;HRun=0;HaplotypeScore=147.6799;IndelType=I;MQ=58.81;MQ0=0;MQRankSum=-0.161;QD=31.88;ReadPosRankSum=-1.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320567    GT:AD:DP:GQ:PL    0/1:23,28:50:99:1665,0,825
1    27278573    rs17360994    T    C    214.44    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=19;Dels=0.0;FS=1.957;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=11.29;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=Q100R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27277833_27278903;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf172;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320567    GT:AD:DP:GQ:PL    0/1:11,8:19:99:244,0,339
1    27306825    rs12737292    G    A    228.18    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.75;DB;DP=31;Dels=0.0;FS=1.451;HRun=1;HaplotypeScore=0.0;MQ=57.74;MQ0=0;MQRankSum=0.142;QD=7.36;ReadPosRankSum=0.142;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-344H11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310055    GT:AD:DP:GQ:PL    0/1:19,12:31:99:258,0,583
1    27332465    rs61737591    G    A    303.71    HaplotypeScoreFilter13    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.532;DB;DP=35;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=13.2297;MQ=58.71;MQ0=0;MQRankSum=1.099;QD=8.44;ReadPosRankSum=-1.418;SNPEFF_AMINO_ACID_CHANGE=H416;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27331511_27333448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM46B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289166    GT:AD:DP:GQ:PL    0/1:13,21:35:99:334,0,381
1    27332466    rs61737590    T    C    298.96    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DB;DP=35;Dels=0.03;FS=1.412;HRun=0;HaplotypeScore=12.2632;MQ=58.71;MQ0=0;MQRankSum=0.734;QD=8.3;ReadPosRankSum=-1.28;SNPEFF_AMINO_ACID_CHANGE=H416R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27331511_27333448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM46B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289166    GT:AD:DP:GQ:PL    0/1:13,22:35:99:329,0,372
1    27426796    rs4266911    T    C    242.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=13.47;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447808    GT:AD:DP:GQ:PL    0/1:8,10:18:99:272,0,231
1    27427041    rs4418629    T    C    2072.61    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.778;DB;DP=158;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4725;MQ=59.71;MQ0=0;MQRankSum=-0.8;QD=13.12;ReadPosRankSum=0.339;SNPEFF_AMINO_ACID_CHANGE=E156;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27426836_27427135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447808    GT:AD:DP:GQ:PL    0/1:85,73:158:99:2103,0,2575
1    27428321    rs6598870    T    C    271.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=11.3;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374086    GT:AD:DP:GQ:PL    0/1:12,12:24:99:301,0,321
1    27435976    rs3738689    C    G    265.43    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.561;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.4;MQ0=0;MQRankSum=-1.861;QD=8.56;ReadPosRankSum=0.345;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374084    GT:AD:DP:GQ:PL    0/1:15,16:31:99:295,0,419
1    27480293    rs6697059    G    C    79.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=19.86;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263980    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:109,0,28
1    27480757    rs34306208    A    G    510.20    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.553;DB;DP=43;Dels=0.0;FS=6.822;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.159;QD=11.87;ReadPosRankSum=1.235;SNPEFF_AMINO_ACID_CHANGE=V23;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27480474_27481401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263980    GT:AD:DP:GQ:PL    0/1:24,19:43:99:540,0,713
1    27609980    rs6670124    T    G    253.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.51;MQ0=0;QD=11.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319394    GT:AD:DP:GQ:PL    1/1:0,23:23:21.07:286,21,0
1    27610069    rs10902656    C    T    162.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319394    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
1    27623276    .    A    ACCCTAGCCCCAGCCCCAG    473.42    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=84.3438;IndelType=I;MQ=63.01;MQ0=0;QD=59.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319394    GT:AD:DP:GQ:PL    1/1:1,3:8:21.07:515,21,0
1    27659965    rs6687283    C    T    414.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374073    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:447,33,0
1    27659989    rs35397588    G    A    226.12    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=25.12;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374073    GT:AD:DP:GQ:PL    0/1:1,8:9:17.68:256,0,18
1    27660568    rs35771571    G    A    412.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.571;DB;DP=26;Dels=0.0;FS=6.239;HRun=0;HaplotypeScore=0.9979;MQ=57.46;MQ0=0;MQRankSum=2.257;QD=15.88;ReadPosRankSum=1.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374073    GT:AD:DP:GQ:PL    0/1:13,13:26:99:443,0,350
1    27661707    rs4539159    T    C    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.34;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374073    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,111
1    27661755    rs71294466    T    TGTA    493.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=46.1808;IndelType=I;MQ=54.94;MQ0=0;MQRankSum=-0.978;QD=41.15;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374073    GT:AD:DP:GQ:PL    0/1:4,8:12:99:533,0,126
1    27676925    rs6702341    G    A    1306.80    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=94;Dels=0.0;FS=0.798;HRun=2;HaplotypeScore=0.734;MQ=59.75;MQ0=0;MQRankSum=-1.547;QD=13.9;ReadPosRankSum=1.29;SNPEFF_AMINO_ACID_CHANGE=K306;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27676880_27676976;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318074    GT:AD:DP:GQ:PL    0/1:46,48:94:99:1337,0,1418
1    27679692    rs11247639    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357582    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    27679797    rs3813795    A    G    144.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.81;SNPEFF_AMINO_ACID_CHANGE=Q444R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27679774_27679979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318074    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
1    27679954    rs1128918    G    A    198.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.43;SNPEFF_AMINO_ACID_CHANGE=G496;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27679774_27679979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318074    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:232,18,0
1    27680292    rs8533    A    G    1007.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.95;MQ0=0;QD=31.49;SNPEFF_AMINO_ACID_CHANGE=E534;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27680204_27680421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318074    GT:AD:DP:GQ:PL    1/1:0,32:32:78.25:1041,78,0
1    27682126    rs12742921    T    C    446.79    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.165;DB;DP=29;Dels=0.0;FS=7.04;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.737;QD=15.41;ReadPosRankSum=0.967;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476509    GT:AD:DP:GQ:PL    0/1:13,16:29:99:477,0,421
1    27682440    rs36035221    T    TG    557.59    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=85.0512;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=0.372;QD=30.98;ReadPosRankSum=-1.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476509    GT:AD:DP:GQ:PL    0/1:4,14:18:99:597,0,114
1    27682481    rs12569127    G    A    466.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.704;DB;DP=24;Dels=0.0;FS=2.299;HRun=0;HaplotypeScore=0.0;MQ=59.94;MQ0=0;MQRankSum=-0.031;QD=19.45;ReadPosRankSum=1.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476509    GT:AD:DP:GQ:PL    0/1:8,16:24:99:497,0,212
1    27686063    rs7521552    G    C    454.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357582    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:488,36,0
1    27687466    rs35659744    G    T    63.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.136;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.09;ReadPosRankSum=1.3;SNPEFF_AMINO_ACID_CHANGE=N345K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27687412_27687499;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545447    GT:AD:DP:GQ:PL    0/1:4,3:7:93.63:94,0,107
1    27688633    rs1138294    G    A    166.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.78;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.241;QD=9.27;ReadPosRankSum=-1.395;SNPEFF_AMINO_ACID_CHANGE=T178I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27688582_27688741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545447    GT:AD:DP:GQ:PL    0/1:9,9:18:99:197,0,291
1    27690644    rs12727507    A    G    178.56    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.817;DB;DP=19;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.449;QD=9.4;ReadPosRankSum=0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270879    GT:AD:DP:GQ:PL    0/1:10,9:19:99:209,0,314
1    27696011    rs10218730    C    T    652.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=36.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481748    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:685,51,0
1    27699449    rs10794501    A    T    452.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481748    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:485,36,0
1    27720178    rs2504786    T    C    593.78    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.606;QD=14.14;ReadPosRankSum=0.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374024    GT:AD:DP:GQ:PL    0/1:19,23:42:99:624,0,632
1    27874042    .    G    A    133.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.935;QD=10.3;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=R1529C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27873772_27878700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247087    GT:AD:DP:GQ:PL    0/1:7,6:13:99:164,0,230
1    27875824    rs4908364    C    T    842.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=A935T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27873772_27878700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247087    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:875,66,0
1    27876482    rs2076457    C    A    238.09    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.157;QD=17.01;ReadPosRankSum=1.774;SNPEFF_AMINO_ACID_CHANGE=P715;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_27873772_27878700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247087    GT:AD:DP:GQ:PL    0/1:4,10:14:74.99:268,0,75
1    27942176    rs2231879    T    C    81.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.157;QD=5.42;ReadPosRankSum=-1.003;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGR;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000469062    GT:AD:DP:GQ:PL    0/1:10,5:15:99:111,0,295
1    27943308    rs761069    T    C    428.76    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.407;DB;DP=47;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.038;QD=9.12;ReadPosRankSum=-1.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374003    GT:AD:DP:GQ:PL    0/1:26,21:47:99:459,0,908
1    27947840    rs74317741    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468038    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    27995077    rs56015130    G    T    151.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339145    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
1    28086955    rs10902671    C    A    611.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM76A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446647    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:645,48,0
1    28206588    rs12568383    T    C    406.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427466    GT:AD:DP:GQ:PL    1/1:0,14:14:39.06:439,39,0
1    28209305    rs3766398    A    G    1776.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=L361;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_28209024_28209554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328928    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1809,141,0
1    28209362    rs3766399    T    C    1528.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=V380;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_28209024_28209554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328928    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1562,123,0
1    28209366    rs3766400    A    G    1667.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_AMINO_ACID_CHANGE=K382E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_28209024_28209554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328928    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1700,129,0
1    28211650    rs1467464    T    C    132.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442118    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
1    28212272    rs11247705    G    A    208.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442118    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:241,18,0
1    28220484    rs17257252    C    A    695.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444045    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:729,57,0
1    28224312    rs2295367    C    T    172.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313433    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:205,15,0
1    28233289    rs6598912    G    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313433    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    28261648    .    C    G    108.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=12.02;ReadPosRankSum=-0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPDL3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466793    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,131
1    28281924    rs3813805    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPDL3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373888    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
1    28282292    rs3813803    T    C    2152.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_AMINO_ACID_CHANGE=V215A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_28282195_28282375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPDL3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412515    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2185,163,0
1    28282819    rs4908381    T    C    553.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=32.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPDL3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411604    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:586,48,0
1    28290231    rs4373781    C    G    108.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=27.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPDL3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373890    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:141,12,0
1    28369279    rs2476547    G    A    202.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.984;QD=12.66;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373863    GT:AD:DP:GQ:PL    0/1:8,8:16:99:233,0,277
1    28520161    rs905908    C    T    490.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTAFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305392    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:524,42,0
1    28527011    rs1049504    A    G    438.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321830    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:472,39,0
1    28537245    rs41311280    C    T    388.14    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.016;QD=16.88;ReadPosRankSum=-1.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263697    GT:AD:DP:GQ:PL    0/1:11,12:23:99:418,0,294
1    28555281    rs77508142    A    T    180.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=11.3;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263697    GT:AD:DP:GQ:PL    0/1:9,6:16:99:211,0,281
1    28555426    rs567086    G    A    3859.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263697    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3859,283,0
1    28555579    rs3753863    C    A    610.44    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.374;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=19.69;ReadPosRankSum=0.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263697    GT:AD:DP:GQ:PL    0/1:11,20:31:99:640,0,352
1    28559232    rs559509    T    C    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263697    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    28559574    rs510803    C    G    175.13    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.78;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=11.68;ReadPosRankSum=0.068;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335514    GT:AD:DP:GQ:PL    0/1:8,7:15:99:205,0,213
1    28562676    rs12154    A    G    112.62    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.841;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=8.04;ReadPosRankSum=0.133;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263697    GT:AD:DP:GQ:PL    0/1:9,5:14:99:143,0,287
1    28564252    rs8559    A    G    310.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417632    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:344,27,0
1    28564279    rs9508    A    G    245.20    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.646;DB;DP=16;Dels=0.0;FS=2.596;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.33;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=R63G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_28564272_28564616;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPIF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000497986    GT:AD:DP:GQ:PL    0/1:7,9:16:99:275,0,244
1    28696392    rs6703793    C    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373839    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    28733993    rs12091029    G    T    1764.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=59.69;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373839    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1798,135,0
1    28765094    rs61783845    G    A    218.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373836    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
1    28800380    rs61785974    C    A    2897.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.7;MQ0=0;QD=37.14;SNPEFF_AMINO_ACID_CHANGE=L379I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_28800066_28800663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373838    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2930,220,0
1    28817597    rs10915235    A    G    506.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373836    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:540,39,0
1    28822804    rs10915180    T    G    90.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.55;MQ0=0;QD=22.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373836    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:123,12,0
1    28834154    rs2840759    G    T    281.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373833    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:315,24,0
1    28843318    rs79722995    A    G    301.68    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.326;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.155;QD=13.12;ReadPosRankSum=1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398958    GT:AD:DP:GQ:PL    0/1:13,10:23:99:332,0,399
1    28861636    rs2066726    G    A    1222.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_AMINO_ACID_CHANGE=V172;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_28861562_28861658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373832    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1255,99,0
1    28863075    rs4654325    A    G    254.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419074    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
1    28887031    rs10915245    A    G    272.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNAU1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373830    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:306,27,0
1    28898298    .    A    AAT    150.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DP=12;FS=0.0;HRun=0;HaplotypeScore=114.0731;IndelType=I;MQ=43.19;MQ0=0;MQRankSum=1.769;QD=12.55;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNAU1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495215    GT:AD:DP:GQ:PL    0/1:6,6:12:26.93:190,0,27
1    28905566    rs1342086    G    C    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNAU1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373830    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
1    29063559    rs6697540    A    C    104.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=26.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=YTHDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474884    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:137,12,0
1    29064036    rs61787567    C    T    65.20    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=7.24;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=YTHDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373812    GT:AD:DP:GQ:PL    0/1:6,3:9:95.20:95,0,184
1    29065039    rs6704457    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=YTHDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373812    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    29070856    rs17340752    A    G    34.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=YTHDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396232    GT:AD:DP:GQ:PL    0/1:4,2:6:64.82:65,0,147
1    29189597    rs2234918    C    T    38.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=6.38;ReadPosRankSum=-1.537;SNPEFF_AMINO_ACID_CHANGE=G259;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_29189490_29189795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536280    GT:AD:DP:GQ:PL    0/1:3,3:6:68.30:68,0,102
1    29345009    rs5773229    C    CTT    1056.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=51.167;IndelType=I;MQ=58.63;MQ0=0;QD=58.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343067    GT:AD:DP:GQ:PL    1/1:0,18:18:54.19:1098,54,0
1    29345027    rs2985334    T    G    38.81    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.269;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.46;MQ0=0;MQRankSum=-0.538;QD=2.43;ReadPosRankSum=-1.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343067    GT:AD:DP:GQ:PL    0/1:13,3:16:68.80:69,0,472
1    29439016    rs4654390    T    A    343.32    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.426;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4148;MQ=58.84;MQ0=0;MQRankSum=-1.109;QD=17.17;ReadPosRankSum=-0.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462032    GT:AD:DP:GQ:PL    0/1:7,13:20:99:373,0,225
1    29475341    rs2230678    C    T    972.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_AMINO_ACID_CHANGE=G356S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_29474255_29475738;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373795    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1006,75,0
1    29475394    rs2230677    C    G    798.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=29.58;SNPEFF_AMINO_ACID_CHANGE=G338A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_29474255_29475738;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373795    GT:AD:DP:GQ:PL    1/1:0,27:27:75.13:832,75,0
1    29475648    rs2230679    T    G    3376.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8824;MQ=59.57;MQ0=0;QD=31.56;SNPEFF_AMINO_ACID_CHANGE=K152Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_29474657_29475738;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546138    GT:AD:DP:GQ:PL    1/1:1,106:107:99:3377,259,0
1    29508350    rs571016    C    T    175.83    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.717;QD=15.98;ReadPosRankSum=-0.143;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466448    GT:AD:DP:GQ:PL    0/1:5,6:11:99:206,0,140
1    29529699    rs1062924    T    C    166.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.82;SNPEFF_AMINO_ACID_CHANGE=A111;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_29529643_29529745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373792    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
1    29533080    rs2503017    A    G    74.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.47;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474946    GT:AD:DP:GQ:PL    0/1:2,4:6:64.96:105,0,65
1    29542435    rs2640469    C    G    1355.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464915    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1388,105,0
1    29542637    rs1128400    A    G    2607.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=F20L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_29542517_29542648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373791    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2640,193,0
1    29542926    rs3003636    A    T    702.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484012    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:735,54,0
1    29557224    rs2640466    C    T    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263702    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
1    29563059    rs75011501    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_29563047_29563229;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRU;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323874    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    29580348    rs997550    C    T    528.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323874    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:561,42,0
1    30117517    rs692787    A    G    77.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092265.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408199    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:109,9,0
1    30357704    rs61763487    G    A    68.26    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.75;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL645944.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410855    GT:AD:DP:GQ:PL    0/1:4,3:7:98.26:98,0,145
1    31188089    rs1065755    C    T    1060.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.245;DB;DP=70;Dels=0.0;FS=0.924;HRun=1;HaplotypeScore=2.5205;MQ=59.67;MQ0=0;MQRankSum=-0.658;QD=15.15;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=E425;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_31188004_31188156;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373765    GT:AD:DP:GQ:PL    0/1:35,35:70:99:1090,0,928
1    31188316    rs34804437    A    C    111.35    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.27;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477320    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:141,0,26
1    31188901    rs20566    A    G    1018.44    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.167;DB;DP=81;Dels=0.0;FS=0.861;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.063;QD=12.57;ReadPosRankSum=-0.227;SNPEFF_AMINO_ACID_CHANGE=T354;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_31188756_31189172;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373765    GT:AD:DP:GQ:PL    0/1:44,37:81:99:1048,0,1434
1    31191466    rs1188393    G    C    69.03    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=13.81;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373765    GT:AD:DP:GQ:PL    0/1:2,3:5:25.76:99,0,26
1    31191516    rs10914186    G    C    103.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.89;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373765    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,137
1    31192304    rs1149040    G    T    94.33    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.057;QD=5.55;ReadPosRankSum=0.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373765    GT:AD:DP:GQ:PL    0/1:13,4:17:99:124,0,344
1    31206637    rs3795438    C    T    95.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=13.64;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464569    GT:AD:DP:GQ:PL    0/1:3,4:7:99:125,0,104
1    31206806    rs3795437    T    C    222.04    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=22.2;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294507    GT:AD:DP:GQ:PL    0/1:2,8:10:34.84:252,0,35
1    31208042    rs35351292    C    T    2214.62    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.388;DB;DP=174;Dels=0.0;FS=0.559;HRun=3;HaplotypeScore=0.8321;MQ=59.5;MQ0=0;MQRankSum=0.095;QD=12.65;ReadPosRankSum=0.17;SNPEFF_AMINO_ACID_CHANGE=R226K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_31208020_31208112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294507    GT:AD:DP:GQ:PL    0/1:88,86:174:99:2245,0,2658
1    31413925    .    AATAAG    A    1026.99    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=4.332;DP=47;FS=0.0;HRun=0;HaplotypeScore=257.6436;IndelType=D;MQ=57.3;MQ0=0;MQRankSum=-0.698;QD=21.85;ReadPosRankSum=0.587;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527498    GT:AD:DP:GQ:PL    0/1:27,20:47:99:1066,0,2151
1    31422799    rs2275740    C    T    78.26    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=19.57;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257075    GT:AD:DP:GQ:PL    0/1:1,3:4:18.55:108,0,19
1    31440921    rs4317854    G    A    130.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543952    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:163,12,0
1    31478638    rs144492568    AAGAGAG    A    1349.88    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.617;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=367.8386;IndelType=D;MQ=40.81;MQ0=0;MQRankSum=-1.386;QD=30.68;ReadPosRankSum=0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257075    GT:AD:DP:GQ:PL    0/1:14,18:44:7.91:1389,0,8
1    31654305    rs4949357    C    G    92.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530145    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
1    31654940    rs2297959    C    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530145    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    31740668    rs3753374    C    T    995.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474025    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1029,75,0
1    31741816    rs3737756    A    G    89.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474025    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
1    31744168    rs3737755    G    A    1271.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263694    GT:AD:DP:GQ:PL    1/1:0,33:33:96.30:1305,96,0
1    31761936    rs7521463    T    A    134.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463988    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
1    31761989    rs1532859    G    A    401.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463988    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:434,33,0
1    31762374    rs1532858    C    T    677.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463988    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:710,54,0
1    31764693    rs12135540    G    A    955.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=38.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463988    GT:AD:DP:GQ:PL    1/1:0,25:25:75.24:988,75,0
1    31764713    .    C    CAAG    2006.04    PASS    AC=2;AF=1.00;AN=2;DP=33;FS=0.0;HRun=0;HaplotypeScore=178.1959;IndelType=I;MQ=55.26;MQ0=0;QD=60.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463988    GT:AD:DP:GQ:PL    1/1:5,27:33:93.32:2048,93,0
1    31764930    rs10733007    T    C    567.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=37.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463988    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:600,45,0
1    31765968    rs1546375    C    T    484.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263694    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:518,39,0
1    31766491    rs1532861    T    C    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263694    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    31792141    rs4949384    A    G    404.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344147    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:437,33,0
1    31840426    rs2271072    C    G    842.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344147    GT:AD:DP:GQ:PL    1/1:0,25:25:72.13:876,72,0
1    31883475    rs4949208    G    A    683.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=37.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373710    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:716,54,0
1    31898132    rs4949400    T    C    1018.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.644;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.139;QD=29.1;ReadPosRankSum=-1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:1,34:35:45.51:1052,46,0
1    31898162    rs4949401    C    T    1115.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.644;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.238;QD=31.87;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:1,34:35:51.07:1148,51,0
1    31898234    rs4949402    T    C    903.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.11;SNPEFF_AMINO_ACID_CHANGE=I150;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_31898177_31898256;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:0,30:30:75.23:936,75,0
1    31898279    rs4949403    A    C    828.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.321;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.14;MQ0=0;MQRankSum=-1.733;QD=30.68;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:1,26:27:35.91:861,36,0
1    31898463    rs2275436    C    T    1894.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1927,147,0
1    31898536    rs2275435    C    T    4859.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1844;MQ=59.79;MQ0=0;MQRankSum=0.433;QD=31.55;ReadPosRankSum=-0.593;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:1,153:154:99:4859,367,0
1    31898639    rs35976845    C    T    1772.41    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=5.094;DB;DP=150;Dels=0.0;FS=0.742;HRun=0;HaplotypeScore=2.9032;MQ=59.48;MQ0=0;MQRankSum=0.48;QD=11.74;ReadPosRankSum=-0.225;SNPEFF_AMINO_ACID_CHANGE=G163;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_31898623_31898760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    0/1:84,66:150:99:1802,0,2129
1    31899684    rs10454445    A    T    2386.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=28.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487207    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2419,198,0
1    31899704    rs10454446    C    T    2255.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.59;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487207    GT:AD:DP:GQ:PL    1/1:0,65:66:99:2288,175,0
1    31905730    rs7547845    T    C    47.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
1    31905889    rs3050461    A    ACAG    1654.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=107.542;IndelType=I;MQ=57.44;MQ0=0;QD=47.27;SNPEFF_AMINO_ACID_CHANGE=-364Q;SNPEFF_CODON_CHANGE=-/CAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_31905814_31906032;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:6,28:34:84.29:1697,84,0
1    31906882    rs11587589    A    G    2123.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373709    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2156,175,0
1    31907089    rs141375854    T    C    588.74    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=59.55;MQ0=0;MQRankSum=0.146;QD=11.54;ReadPosRankSum=0.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491976    GT:AD:DP:GQ:PL    0/1:24,27:51:99:619,0,676
1    31907102    rs7417775    A    G    1354.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=37.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491976    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1388,105,0
1    32044641    rs12753402    G    A    77.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.45;MQ0=0;MQRankSum=0.727;QD=19.38;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TINAGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466998    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:110,9,0
1    32084904    rs1056526    C    T    1991.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=R37;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32084794_32084992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HCRTR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373705    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2025,150,0
1    32086912    rs2280386    A    C    382.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HCRTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373705    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:416,33,0
1    32092525    rs2271933    A    G    3744.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=I408V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32092391_32092792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HCRTR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373706    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3744,283,0
1    32092735    rs2176807    T    G    95.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HCRTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485464    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
1    32096265    rs1061770    A    G    1005.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_AMINO_ACID_CHANGE=I268;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32095463_32096443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373703    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1038,81,0
1    32118160    rs1061392    C    A    543.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.05;FS=0.0;HRun=8;HaplotypeScore=1.9663;MQ=57.77;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440437    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:576,51,0
1    32119347    rs67961612    AACAC    A    592.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=113.1787;IndelType=D;MQ=59.25;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440437    GT:AD:DP:GQ:PL    1/1:4,14:18:42.14:634,42,0
1    32119431    rs3817398    T    C    783.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=58.45;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440437    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:816,63,0
1    32122164    rs7545321    A    G    217.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466829    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
1    32122444    .    T    A    51.69    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=3.7326;MQ=51.61;MQ0=0;MQRankSum=-0.555;QD=3.69;ReadPosRankSum=2.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466829    GT:AD:DP:GQ:PL    0/1:6,8:14:81.68:82,0,114
1    32131163    rs1356803    C    G    1167.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468459    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1200,90,0
1    32134491    rs2271929    C    G    651.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458715    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:685,54,0
1    32140733    rs2292993    C    T    437.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=27.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373668    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:471,39,0
1    32145009    rs4949461    C    T    781.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474000    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:815,60,0
1    32146425    rs11590964    C    T    609.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.08;DB;DP=36;Dels=0.0;FS=6.913;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.289;QD=16.94;ReadPosRankSum=0.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474000    GT:AD:DP:GQ:PL    0/1:16,20:36:99:640,0,467
1    32146764    rs2297684    C    T    107.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.47;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474000    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,101
1    32148571    rs10737358    A    G    1406.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.19;MQ0=0;QD=28.7;SNPEFF_AMINO_ACID_CHANGE=P55;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32148535_32148603;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458715    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1439,111,0
1    32155284    rs2297682    T    C    756.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:790,63,0
1    32155911    rs6425780    G    T    361.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:394,30,0
1    32155929    rs2297681    G    A    588.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    1/1:0,20:20:48.14:621,48,0
1    32156722    rs10914467    G    A    1910.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1944,144,0
1    32156869    rs10798884    A    T    1195.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    1/1:0,33:34:90.30:1228,90,0
1    32157531    rs2297676    T    C    984.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1017,75,0
1    32158374    rs3818788    T    C    605.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=P369;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32158368_32158409;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:639,51,0
1    32160918    rs6656079    A    G    176.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532877    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
1    32163950    rs2297674    G    C    306.92    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.37;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.859;QD=10.96;ReadPosRankSum=-1.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532877    GT:AD:DP:GQ:PL    0/1:16,12:28:99:337,0,520
1    32163975    rs76790410    C    A    253.75    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.09;DB;DP=26;Dels=0.0;FS=1.81;HRun=1;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=-0.986;QD=9.76;ReadPosRankSum=-0.052;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532877    GT:AD:DP:GQ:PL    0/1:15,11:26:99:284,0,390
1    32164206    rs2228550    T    G    138.56    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.985;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=58.89;MQ0=0;MQRankSum=0.428;QD=6.6;ReadPosRankSum=-0.895;SNPEFF_AMINO_ACID_CHANGE=R90;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32164084_32164207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    0/1:15,6:21:99:169,0,526
1    32165495    rs2228552    G    T    412.27    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.391;QD=15.27;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=T62K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32165414_32165531;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL16A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271069    GT:AD:DP:GQ:PL    0/1:12,15:27:99:442,0,328
1    32266026    rs552124    A    G    58.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=14.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525930    GT:AD:DP:GQ:PL    1/1:0,4:4:9:90,9,0
1    32279629    rs6669563    G    A    607.26    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.759;DB;DP=59;Dels=0.0;FS=4.136;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.176;QD=10.29;ReadPosRankSum=0.13;SNPEFF_AMINO_ACID_CHANGE=R436W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32279552_32280973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360482    GT:AD:DP:GQ:PL    0/1:34,25:59:99:637,0,1156
1    32280610    rs6664445    T    C    1095.33    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8488;MQ=60.0;MQ0=0;MQRankSum=0.31;QD=16.35;ReadPosRankSum=-0.825;SNPEFF_AMINO_ACID_CHANGE=T109A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32279552_32280973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360482    GT:AD:DP:GQ:PL    0/1:29,36:67:99:1125,0,864
1    32377076    rs111837618    C    T    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTP4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468531    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:71,0,67
1    32557219    rs114695697    A    G    127.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=12.74;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336294    GT:AD:DP:GQ:PL    0/1:5,5:10:99:157,0,175
1    32631613    .    A    AAAC    333.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DP=14;FS=0.0;HRun=0;HaplotypeScore=42.3602;IndelType=I;MQ=62.28;MQ0=0;MQRankSum=0.529;QD=23.81;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469790    GT:AD:DP:GQ:PL    0/1:7,7:14:99:372,0,165
1    32658062    rs79952364    G    GGT    531.70    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.817;DB;DP=24;FS=6.107;HRun=0;HaplotypeScore=83.9508;IndelType=I;MQ=59.49;MQ0=0;MQRankSum=0.296;QD=22.15;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373609    GT:AD:DP:GQ:PL    0/1:12,12:24:99:571,0,234
1    32672932    rs12032332    G    A    460.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=34;Dels=0.0;FS=1.901;HRun=0;HaplotypeScore=2.9566;MQ=59.32;MQ0=0;MQRankSum=0.551;QD=13.53;ReadPosRankSum=1.24;SNPEFF_AMINO_ACID_CHANGE=C217Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_32672841_32674288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291358    GT:AD:DP:GQ:PL    0/1:17,17:34:99:490,0,542
1    32689857    rs589034    A    G    176.54    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=25.22;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355082    GT:AD:DP:GQ:PL    0/1:1,6:7:20.70:207,0,21
1    32741690    .    G    A    565.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.461;QD=16.16;ReadPosRankSum=-0.567;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355928    GT:AD:DP:GQ:PL    0/1:14,21:35:99:596,0,381
1    32750992    rs11576040    G    A    286.72    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.433;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=16.87;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333070    GT:AD:DP:GQ:PL    0/1:8,9:17:99:317,0,278
1    32860161    rs547329    T    C    360.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474414    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:393,30,0
1    33065830    rs142604487    T    C    186.74    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=21;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.8667;MQ=57.77;MQ0=0;MQRankSum=0.905;QD=8.89;ReadPosRankSum=-1.774;SNPEFF_AMINO_ACID_CHANGE=I379T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_33065688_33066385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB8A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373510    GT:AD:DP:GQ:PL    0/1:13,8:21:99:217,0,465
1    33065947    rs704886    G    C    1080.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=H46Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_33065773_33065951;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB8OS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341885    GT:AD:DP:GQ:PL    1/1:0,33:33:84.26:1114,84,0
1    33133968    rs2762904    T    C    1583.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.94;MQ0=0;QD=31.06;SNPEFF_AMINO_ACID_CHANGE=V116;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_33133826_33133999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458695    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1617,123,0
1    33134774    rs359955    A    C    2206.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401893    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2239,175,0
1    33134989    rs359956    A    G    2491.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=32.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401893    GT:AD:DP:GQ:PL    1/1:1,76:77:99:2525,190,0
1    33137928    rs2762905    A    G    85.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401893    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
1    33138516    rs607202    A    C    936.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401893    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:970,72,0
1    33138605    rs1320511    T    C    279.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401893    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:313,24,0
1    33160150    rs360043    A    G    122.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417633    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
1    33160878    rs360042    C    T    1110.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.16;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=R274Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_33160466_33161645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373484    GT:AD:DP:GQ:PL    1/1:0,32:33:84.28:1144,84,0
1    33161212    rs360041    T    C    912.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=M163V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_33160466_33161645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373484    GT:AD:DP:GQ:PL    1/1:0,29:29:78.20:946,78,0
1    33233223    rs4951771    C    T    451.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1522;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294521    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:485,36,0
1    33233237    rs360524    G    A    437.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1522;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294521    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:470,36,0
1    33233323    rs360523    A    G    1443.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1522;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294521    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1477,111,0
1    33234136    rs360522    T    C    266.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1522;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294521    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:299,24,0
1    33234153    rs3737993    G    A    295.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1522;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294521    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
1    33235626    rs3737995    G    A    347.09    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=18;Dels=0.0;FS=5.528;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.754;QD=19.28;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=A223;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_33235481_33238042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1522;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373480    GT:AD:DP:GQ:PL    0/1:7,11:18:99:377,0,166
1    33252436    rs41265863    G    T    396.80    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.203;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=15.87;ReadPosRankSum=1.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=YARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466052    GT:AD:DP:GQ:PL    0/1:12,13:25:99:427,0,411
1    33276424    rs4951787    G    A    2175.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=YARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373477    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2209,169,0
1    33293748    rs10753266    T    C    711.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100PBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482212    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:745,57,0
1    33318561    rs702836    T    C    342.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100PBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373475    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:375,27,0
1    33318634    rs785274    G    A    1346.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=37.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100PBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373475    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1379,102,0
1    33318868    rs61236897    C    CATTTGAG    1132.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=193.4414;IndelType=I;MQ=40.33;MQ0=0;QD=80.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100PBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373475    GT:AD:DP:GQ:PL    1/1:2,4:14:42.14:1175,42,0
1    33318869    rs12750345    G    C    67.19    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.33;MQ0=0;MQRankSum=1.708;QD=4.8;ReadPosRankSum=-2.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100PBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373475    GT:AD:DP:GQ:PL    0/1:8,3:14:27.28:97,0,27
1    33321796    rs12126851    G    A    187.66    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.468;QD=13.4;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100PBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475486    GT:AD:DP:GQ:PL    0/1:6,8:14:99:218,0,209
1    33330432    rs1284368    A    G    363.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FNDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373470    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:396,30,0
1    33364095    rs942242    C    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373467    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    33411956    .    C    T    282.61    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DP=22;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=12.85;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF19B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235150    GT:AD:DP:GQ:PL    0/1:12,10:22:99:313,0,419
1    33446052    rs144124490    G    C    134.35    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.781;DB;DP=29;Dels=0.0;FS=1.735;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=4.63;ReadPosRankSum=0.415;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP4-803A2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395888    GT:AD:DP:GQ:PL    0/1:21,8:29:99:164,0,638
1    33476353    rs66599471    C    T    31.95    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=54.39;MQ0=0;MQRankSum=-3.723;QD=1.14;ReadPosRankSum=1.596;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354858    GT:AD:DP:GQ:PL    0/1:22,6:28:61.94:62,0,802
1    33560338    rs804428    A    G    857.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462920    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:890,66,0
1    33631069    rs2306257    C    A    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291416    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:67,0,72
1    33646950    rs622407    A    G    123.04    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=13;Dels=0.0;FS=2.533;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.545;QD=9.46;ReadPosRankSum=-0.817;SNPEFF_AMINO_ACID_CHANGE=H28;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_33646626_33647267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291416    GT:AD:DP:GQ:PL    0/1:5,8:13:99:153,0,171
1    33742228    rs4475712    T    C    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF362;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373428    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
1    33746163    rs10914676    T    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF362;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
1    33760743    rs4641276    T    C    1385.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF362;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373428    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1419,108,0
1    33794853    rs7551448    A    G    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473158    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    33795572    rs10914684    G    A    158.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473158    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:191,15,0
1    33795590    rs10914685    A    T    178.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473158    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:211,18,0
1    33796834    rs34504596    GA    G    893.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=2;HaplotypeScore=65.9685;IndelType=D;MQ=60.43;MQ0=0;QD=35.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473158    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:935,72,0
1    33957152    rs4403594    T    G    2437.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_AMINO_ACID_CHANGE=Y366D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_33956625_33957302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361328    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2470,190,0
1    34024928    rs16835591    T    C    90.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=7.202;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.133;QD=9.01;ReadPosRankSum=1.133;SNPEFF_AMINO_ACID_CHANGE=Q2842;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34024900_34025073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    0/1:6,4:10:99:120,0,208
1    34025030    rs16835593    A    G    341.46    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.57;DB;DP=19;Dels=0.0;FS=2.017;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.132;QD=17.97;ReadPosRankSum=0.57;SNPEFF_AMINO_ACID_CHANGE=T2808;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34024900_34025073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    0/1:6,13:19:99:371,0,166
1    34037991    rs34459850    GT    G    134.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=18;FS=0.0;HRun=15;HaplotypeScore=94.9552;IndelType=D;MQ=55.31;MQ0=0;MQRankSum=0.81;QD=7.46;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:4,9:18:14.06:176,14,0
1    34038214    rs2641962    T    C    588.03    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.051;QD=15.47;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=M2552V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34038106_34038291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    0/1:18,20:38:99:618,0,560
1    34042810    rs1389560    A    G    211.97    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=23.55;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    0/1:1,8:9:14.69:242,0,15
1    34042834    rs16835628    C    A    311.27    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.691;QD=23.94;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    0/1:2,11:13:47.18:341,0,47
1    34043169    rs11291100    TC    T    141.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=7;HaplotypeScore=25.0908;IndelType=D;MQ=60.0;MQ0=0;QD=15.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:2,7:9:18.04:184,18,0
1    34052272    rs16835645    C    T    163.49    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=12.58;ReadPosRankSum=-1.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    0/1:5,8:13:99:193,0,166
1    34052305    rs12727575    C    T    333.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
1    34052403    rs6425831    A    G    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    34066756    .    T    C    44.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=7.44;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373377    GT:AD:DP:GQ:PL    0/1:3,3:6:74.62:75,0,95
1    34070826    rs12733436    G    A    147.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=10;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373377    GT:AD:DP:GQ:PL    0/1:5,5:10:99:178,0,104
1    34071434    rs1874044    C    T    195.66    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.807;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=8.51;ReadPosRankSum=-1.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373377    GT:AD:DP:GQ:PL    0/1:15,8:23:99:226,0,516
1    34071525    rs1874045    C    T    364.74    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=31;Dels=0.0;FS=3.256;HRun=3;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.861;QD=11.77;ReadPosRankSum=0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373377    GT:AD:DP:GQ:PL    0/1:18,13:31:99:395,0,594
1    34158472    rs12757315    C    T    533.18    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.176;DB;DP=56;Dels=0.0;FS=4.815;HRun=1;HaplotypeScore=5.0616;MQ=59.59;MQ0=0;MQRankSum=0.461;QD=9.52;ReadPosRankSum=-0.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373380    GT:AD:DP:GQ:PL    0/1:34,22:56:99:563,0,1050
1    34158482    rs12757320    C    T    701.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.789;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8773;MQ=59.65;MQ0=0;MQRankSum=-0.029;QD=10.8;ReadPosRankSum=-0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373380    GT:AD:DP:GQ:PL    0/1:39,26:65:99:732,0,1119
1    34164286    rs1887918    A    G    343.93    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=2.015;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.111;QD=11.86;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373380    GT:AD:DP:GQ:PL    0/1:17,12:29:99:374,0,543
1    34166355    rs1550544    C    G    667.23    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.229;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.02;QD=15.52;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373380    GT:AD:DP:GQ:PL    0/1:22,21:43:99:697,0,600
1    34180109    rs141495644    G    A    1140.62    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=5.07;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9931;MQ=59.37;MQ0=0;MQRankSum=-1.688;QD=10.37;ReadPosRankSum=-0.827;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    0/1:70,40:110:99:1171,0,1878
1    34189917    rs519370    C    T    688.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:721,54,0
1    34189957    rs66891440    AG    A    498.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=4;HaplotypeScore=77.6297;IndelType=D;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:540,45,0
1    34238283    rs474474    T    C    485.25    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.376;DB;DP=53;Dels=0.0;FS=6.923;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=8.99;ReadPosRankSum=0.615;SNPEFF_AMINO_ACID_CHANGE=H186R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34237709_34238352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338325    GT:AD:DP:GQ:PL    0/1:33,20:53:99:515,0,1023
1    34270498    rs10737374    G    A    86.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.72;SNPEFF_AMINO_ACID_CHANGE=A40V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34270347_34270499;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338325    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    34276210    rs113336841    T    TA    404.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=10;HaplotypeScore=45.0897;IndelType=I;MQ=57.61;MQ0=0;QD=26.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338325    GT:AD:DP:GQ:PL    1/1:2,13:15:42.11:447,42,0
1    34285342    rs17342512    G    A    511.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=28.4;SNPEFF_AMINO_ACID_CHANGE=A432;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34285314_34285438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:544,42,0
1    34285381    rs11578857    C    T    565.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=28.25;SNPEFF_AMINO_ACID_CHANGE=K419;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34285314_34285438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:598,45,0
1    34285716    rs10914784    G    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    34285995    rs3795414    G    A    2056.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2089,169,0
1    34291094    rs10914785    A    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373381    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
1    34329897    rs911218    T    C    4811.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.67;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=Y35;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34328466_34330392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519684    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4812,367,0
1    34330067    rs10379    A    C    3829.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=32.73;SNPEFF_AMINO_ACID_CHANGE=E92A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_34328466_34330392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519684    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3830,304,0
1    34631101    rs297789    C    T    119.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241312    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
1    34684463    rs705207    G    A    191.59    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=12.77;ReadPosRankSum=0.289;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373374    GT:AD:DP:GQ:PL    0/1:8,7:15:99:222,0,289
1    35227162    rs9426009    C    T    426.63    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=32;Dels=0.0;FS=5.969;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.27;QD=13.33;ReadPosRankSum=-0.894;SNPEFF_AMINO_ACID_CHANGE=R103C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_35226534_35229325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339480    GT:AD:DP:GQ:PL    0/1:13,18:32:99:457,0,305
1    35227362    rs79193415    C    G    334.64    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.197;DB;DP=18;Dels=0.0;FS=2.112;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.197;QD=18.59;ReadPosRankSum=-1.676;SNPEFF_AMINO_ACID_CHANGE=C169W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_35226534_35229325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339480    GT:AD:DP:GQ:PL    0/1:5,13:18:99:365,0,116
1    35251229    rs476220    G    A    111.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543647    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,145
1    35259946    rs1764389    G    A    693.84    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.351;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.13;MQ0=0;MQRankSum=1.321;QD=14.45;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=V44;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_35259798_35261348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342280    GT:AD:DP:GQ:PL    0/1:23,25:48:99:724,0,696
1    35259961    rs1764390    A    G    841.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DB;DP=52;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=1.147;QD=16.18;ReadPosRankSum=-0.138;SNPEFF_AMINO_ACID_CHANGE=Q49;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_35259798_35261348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342280    GT:AD:DP:GQ:PL    0/1:24,28:52:99:871,0,727
1    35260769    rs1764391    C    T    1051.42    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=67;Dels=0.0;FS=7.169;HRun=0;HaplotypeScore=3.1368;MQ=58.26;MQ0=0;MQRankSum=1.187;QD=15.69;ReadPosRankSum=1.382;SNPEFF_AMINO_ACID_CHANGE=P319S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_35259798_35261348;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342280    GT:AD:DP:GQ:PL    0/1:28,38:67:99:1081,0,714
1    35260929    rs3543    G    A    227.09    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=22.71;ReadPosRankSum=-0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450137    GT:AD:DP:GQ:PL    0/1:2,8:10:53.39:257,0,53
1    35332926    rs1001616    G    C    424.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235180    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:457,36,0
1    35350573    rs66657606    CT    C    827.45    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=4.234;DB;DP=43;FS=0.0;HRun=3;HaplotypeScore=108.3629;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=0.515;QD=19.24;ReadPosRankSum=1.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235180    GT:AD:DP:GQ:PL    0/1:16,27:43:99:866,0,562
1    35561510    rs2101973    G    A    1732.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359858    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1765,132,0
1    35562965    rs2971408    G    A    3798.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=V73M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_35562918_35563167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359858    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3799,277,0
1    35563206    rs6658571    C    G    1767.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466390    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1801,132,0
1    35576145    rs2935955    C    T    625.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359858    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:658,48,0
1    35847103    rs7515563    G    C    629.50    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.121;DB;DP=47;Dels=0.0;FS=1.139;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=13.39;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314607    GT:AD:DP:GQ:PL    0/1:25,22:47:99:659,0,807
1    35852521    rs615315    G    T    121.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.731;QD=20.22;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314607    GT:AD:DP:GQ:PL    0/1:2,4:6:18.39:151,0,18
1    35859139    rs137920415    AT    A    371.61    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=17;FS=0.0;HRun=2;HaplotypeScore=47.5383;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=21.86;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314607    GT:AD:DP:GQ:PL    0/1:6,11:17:99:411,0,237
1    35864011    rs188491753    T    C    436.75    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.488;DB;DP=38;Dels=0.0;FS=1.29;HRun=0;HaplotypeScore=0.5784;MQ=58.78;MQ0=0;MQRankSum=-0.665;QD=11.49;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470175    GT:AD:DP:GQ:PL    0/1:22,16:38:99:467,0,690
1    35913724    .    C    T    1152.14    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.878;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7998;MQ=59.3;MQ0=0;MQRankSum=1.115;QD=17.46;ReadPosRankSum=-0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440579    GT:AD:DP:GQ:PL    0/1:29,37:66:99:1182,0,903
1    35925861    rs2819002    C    A    1281.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478463    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1315,99,0
1    35926075    rs72659616    C    T    1072.05    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=4.027;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.451;QD=19.49;ReadPosRankSum=0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478463    GT:AD:DP:GQ:PL    0/1:19,36:55:99:1102,0,498
1    35926150    rs1768560    T    C    531.57    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.806;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.472;QD=20.44;ReadPosRankSum=-1.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478463    GT:AD:DP:GQ:PL    0/1:8,18:26:99:562,0,251
1    36101730    rs523743    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373237    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    36202585    rs35490896    G    A    863.64    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.04;DB;DP=67;Dels=0.0;FS=2.06;HRun=2;HaplotypeScore=1.9312;MQ=60.0;MQ0=0;MQRankSum=0.126;QD=12.89;ReadPosRankSum=0.192;SNPEFF_AMINO_ACID_CHANGE=S1216L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36202515_36202676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373220    GT:AD:DP:GQ:PL    0/1:37,29:67:99:894,0,1202
1    36203659    .    TTTC    T    561.83    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=1.762;DP=26;FS=2.483;HRun=0;HaplotypeScore=156.3649;IndelType=D;MQ=55.98;MQ0=0;MQRankSum=-0.07;QD=21.61;ReadPosRankSum=0.211;SNPEFF_AMINO_ACID_CHANGE=E1135-;SNPEFF_CODON_CHANGE=gaa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_1_36203593_36203698;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373220    GT:AD:DP:GQ:PL    0/1:11,15:26:99:601,0,350
1    36205166    rs577483    A    G    733.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.1;DB;DP=45;Dels=0.0;FS=1.61;HRun=0;HaplotypeScore=0.8321;MQ=58.97;MQ0=0;MQRankSum=0.058;QD=16.29;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251195    GT:AD:DP:GQ:PL    0/1:18,27:45:99:763,0,497
1    36213712    rs516992    G    T    1543.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544356    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1577,117,0
1    36216835    rs535638    C    T    570.34    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.287;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=1.183;QD=12.4;ReadPosRankSum=-0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251195    GT:AD:DP:GQ:PL    0/1:26,19:46:99:600,0,777
1    36219636    rs72659666    G    A    62.01    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=6.2;ReadPosRankSum=1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251195    GT:AD:DP:GQ:PL    0/1:7,3:10:92:92,0,214
1    36225948    rs7537203    T    C    437.53    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.353;DB;DP=31;Dels=0.0;FS=4.738;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=0.644;QD=14.11;ReadPosRankSum=-1.06;SNPEFF_AMINO_ACID_CHANGE=N525S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36225943_36226517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251195    GT:AD:DP:GQ:PL    0/1:16,15:31:99:468,0,517
1    36291750    rs72659690    G    A    67.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.45;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373210    GT:AD:DP:GQ:PL    0/1:6,3:9:97.02:97,0,227
1    36292258    rs72659692    A    G    109.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.937;QD=15.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373210    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,104
1    36316418    rs112794718    C    CA    434.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=10;HaplotypeScore=240.8281;IndelType=I;MQ=46.52;MQ0=0;QD=16.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373210    GT:AD:DP:GQ:PL    1/1:10,14:26:47.60:476,48,0
1    36316571    rs4652895    A    C    198.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.599;DB;DP=18;Dels=0.0;FS=3.214;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.489;QD=11.01;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=S798;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36316455_36316654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373210    GT:AD:DP:GQ:PL    0/1:10,8:18:99:228,0,340
1    36367780    rs595961    A    G    1227.05    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.469;DB;DP=115;Dels=0.0;FS=3.616;HRun=2;HaplotypeScore=2.7565;MQ=59.27;MQ0=0;MQRankSum=-0.136;QD=10.67;ReadPosRankSum=-0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373204    GT:AD:DP:GQ:PL    0/1:68,47:115:99:1257,0,1989
1    36448130    rs72661641    A    G    175.33    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.856;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.785;QD=7.97;ReadPosRankSum=-1.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246314    GT:AD:DP:GQ:PL    0/1:14,8:22:99:205,0,510
1    36469830    rs72661654    T    C    132.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.531;QD=8.86;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246314    GT:AD:DP:GQ:PL    0/1:10,5:15:99:163,0,366
1    36553673    rs399393    A    G    381.20    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=18;Dels=0.0;FS=5.035;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.394;QD=21.18;ReadPosRankSum=1.38;SNPEFF_AMINO_ACID_CHANGE=T393;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36553574_36553876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000207457    GT:AD:DP:GQ:PL    0/1:5,13:18:99:411,0,117
1    36553836    rs12131875    A    C    231.90    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.003;QD=21.08;ReadPosRankSum=-0.354;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPRHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373178    GT:AD:DP:GQ:PL    0/1:2,9:11:54.31:262,0,54
1    36563158    rs3738360    C    A    407.99    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=37;Dels=0.0;FS=1.311;HRun=0;HaplotypeScore=0.8667;MQ=59.38;MQ0=0;MQRankSum=1.218;QD=11.03;ReadPosRankSum=-1.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPRHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373178    GT:AD:DP:GQ:PL    0/1:19,18:37:99:438,0,567
1    36565584    rs274753    C    G    367.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303143    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
1    36565617    rs274754    G    A    650.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303143    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:684,51,0
1    36602943    rs2231318    C    T    238.32    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=23;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.109;QD=10.36;ReadPosRankSum=0.833;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373159    GT:AD:DP:GQ:PL    0/1:15,8:23:99:268,0,389
1    36603290    rs2231317    C    T    140.59    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=12.78;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373159    GT:AD:DP:GQ:PL    0/1:4,7:11:99:171,0,122
1    36641729    rs2296263    C    T    116.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP7D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429533    GT:AD:DP:GQ:PL    0/1:2,4:6:64.40:146,0,64
1    36642991    rs6686192    C    T    39.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.51;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP7D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429533    GT:AD:DP:GQ:PL    0/1:3,3:6:69.03:69,0,111
1    36645811    rs41267273    T    G    1538.96    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.78;DB;DP=99;Dels=0.0;FS=3.726;HRun=1;HaplotypeScore=3.1942;MQ=59.77;MQ0=0;MQRankSum=-0.617;QD=15.55;ReadPosRankSum=-1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP7D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474796    GT:AD:DP:GQ:PL    0/1:35,64:99:99:1569,0,1045
1    36752433    rs6425977    C    T    1694.86    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=59.77;MQ0=0;MQRankSum=0.664;QD=16.95;ReadPosRankSum=0.892;SNPEFF_AMINO_ACID_CHANGE=A201V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36751969_36752871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354618    GT:AD:DP:GQ:PL    0/1:41,59:100:99:1725,0,1277
1    36754522    rs6425979    C    A    174.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354618    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
1    36762396    rs1566589    C    T    1791.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6483;MQ=59.56;MQ0=0;QD=34.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466743    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1825,141,0
1    36767400    rs882799    C    T    393.06    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=3.377;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=20.69;ReadPosRankSum=-1.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354618    GT:AD:DP:GQ:PL    0/1:6,13:19:99:423,0,158
1    36773405    rs35343437    T    G    84.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.776;QD=5.62;ReadPosRankSum=-0.796;SNPEFF_AMINO_ACID_CHANGE=P157;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36773371_36773426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3D21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373139    GT:AD:DP:GQ:PL    0/1:10,5:15:99:114,0,333
1    36773819    rs11263871    C    G    538.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354618    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:572,42,0
1    36785270    rs2282431    C    T    143.54    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.847;QD=8.97;ReadPosRankSum=-0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM176B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270824    GT:AD:DP:GQ:PL    0/1:9,7:16:99:174,0,315
1    36807481    rs3795498    C    T    450.40    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8315;MQ=58.71;MQ0=0;MQRankSum=0.05;QD=12.51;ReadPosRankSum=1.172;SNPEFF_AMINO_ACID_CHANGE=A395T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36805225_36807574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373129    GT:AD:DP:GQ:PL    0/1:19,17:36:99:480,0,520
1    36810011    rs4653181    G    A    30.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.05;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359297    GT:AD:DP:GQ:PL    0/1:4,2:6:60.30:60,0,139
1    36814473    rs55703317    C    T    348.61    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.197;QD=12.02;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359297    GT:AD:DP:GQ:PL    0/1:16,13:29:99:379,0,530
1    36820927    rs11263875    G    A    1915.13    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=4.401;DB;DP=134;Dels=0.0;FS=5.538;HRun=0;HaplotypeScore=2.5395;MQ=59.83;MQ0=0;MQRankSum=-0.826;QD=14.29;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=S150;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36820807_36821034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359297    GT:AD:DP:GQ:PL    0/1:66,68:134:99:1945,0,1682
1    36886364    rs2275478    C    G    409.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525869    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:443,36,0
1    36887702    rs2236565    C    T    1266.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528112    GT:AD:DP:GQ:PL    1/1:0,33:33:93.31:1300,93,0
1    36888302    rs35889349    C    CT    481    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=39;FS=0.0;HRun=13;HaplotypeScore=162.8194;IndelType=I;MQ=58.0;MQ0=0;MQRankSum=0.907;QD=12.33;ReadPosRankSum=1.063;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528112    GT:AD:DP:GQ:PL    0/1:12,24:39:33.85:520,0,34
1    36889197    rs11263892    T    C    233.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354267    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:266,24,0
1    36893811    .    AG    A    140.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=18;FS=0.0;HRun=1;HaplotypeScore=238.8324;IndelType=D;MQ=38.13;MQ0=0;MQRankSum=-1.736;QD=7.79;ReadPosRankSum=1.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354267    GT:AD:DP:GQ:PL    1/1:8,10:18:11.57:182,12,0
1    36897543    rs150028921    C    T    176.66    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.101;QD=13.59;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235532    GT:AD:DP:GQ:PL    0/1:6,7:13:99:207,0,178
1    36909385    rs10908303    G    A    164.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235532    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
1    36923494    rs12023818    G    C    1815.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.666;QD=34.26;ReadPosRankSum=-0.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373116    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1849,102,0
1    36927733    rs111308179    G    A    1080.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=59.32;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=P69;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36927689_36927764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373116    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1114,87,0
1    36935128    rs3917989    G    A    342.45    PASS    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.488;QD=24.46;ReadPosRankSum=-0.496;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF3R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469380    GT:AD:DP:GQ:PL    0/1:1,13:14:2.15:371,0,2
1    36937059    rs3917981    A    G    3423.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.63;MQ0=0;QD=30.3;SNPEFF_AMINO_ACID_CHANGE=T420;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36937034_36937247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF3R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331941    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3424,262,0
1    36937065    rs3917980    A    G    3669.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.1;SNPEFF_AMINO_ACID_CHANGE=R418;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_36937034_36937247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF3R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331941    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3670,280,0
1    37324683    rs3738081    A    C    370.52    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.416;DB;DP=42;Dels=0.0;FS=1.271;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.206;QD=8.82;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373091    GT:AD:DP:GQ:PL    0/1:28,14:42:99:401,0,898
1    37324935    rs12067006    T    C    340.49    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9867;MQ=59.38;MQ0=0;MQRankSum=-0.586;QD=11.35;ReadPosRankSum=0.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373091    GT:AD:DP:GQ:PL    0/1:17,13:30:99:370,0,617
1    37325477    rs6691840    A    C    533.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.744;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.642;QD=16.68;ReadPosRankSum=1.148;SNPEFF_AMINO_ACID_CHANGE=S310A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_37325445_37325618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373091    GT:AD:DP:GQ:PL    0/1:12,20:32:99:564,0,402
1    37335458    rs577094    A    G    959.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373091    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:993,72,0
1    37335485    rs509284    A    G    440.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373091    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:473,36,0
1    37335494    rs577813    G    T    317.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373091    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:351,27,0
1    37335551    rs3738085    G    A    127.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373091    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
1    37948212    rs215205    C    G    608.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471012    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:641,51,0
1    37959450    rs215210    T    C    1209.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=29.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448519    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1242,102,0
1    37959470    rs215211    C    G    1175.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448519    GT:AD:DP:GQ:PL    1/1:0,35:35:90.27:1209,90,0
1    37959499    rs215212    G    C    453.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=30;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.954;QD=15.13;ReadPosRankSum=-0.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448519    GT:AD:DP:GQ:PL    0/1:15,15:30:99:484,0,490
1    37975279    rs215214    C    T    303.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296214    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:337,27,0
1    37975312    rs2036637    T    C    82.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296214    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
1    37978773    rs4653296    T    C    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296214    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
1    37978897    rs61779866    G    A    276.49    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.038;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=9.87;ReadPosRankSum=0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296214    GT:AD:DP:GQ:PL    0/1:18,10:28:99:306,0,622
1    38006359    rs2174769    A    G    1419.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296215    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1452,111,0
1    38022452    rs2273014    C    A    172.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.581;QD=12.33;ReadPosRankSum=0.839;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNALI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296218    GT:AD:DP:GQ:PL    0/1:8,6:14:99:203,0,293
1    38023316    rs11749    C    T    2945.61    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.645;DB;DP=208;DS;Dels=0.0;FS=1.863;HRun=0;HaplotypeScore=4.4944;MQ=59.89;MQ0=0;MQRankSum=-0.732;QD=14.16;ReadPosRankSum=1.113;SNPEFF_AMINO_ACID_CHANGE=A87V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38023204_38023349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNALI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296218    GT:AD:DP:GQ:PL    0/1:106,102:208:99:2976,0,3329
1    38030696    rs6619    T    C    642.90    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.396;DB;DP=37;Dels=0.0;FS=1.695;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.883;QD=17.38;ReadPosRankSum=-0.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNALI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466723    GT:AD:DP:GQ:PL    0/1:14,23:37:99:673,0,391
1    38032294    rs41267325    C    T    95.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.99;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNALI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466723    GT:AD:DP:GQ:PL    0/1:4,4:8:99:126,0,146
1    38034307    rs3896133    G    A    110.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.25;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNALI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296218    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,105
1    38041121    rs186788161    A    G    282.81    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.574;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.031;QD=12.3;ReadPosRankSum=0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469191    GT:AD:DP:GQ:PL    0/1:13,10:23:99:313,0,432
1    38048707    .    A    T    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.4;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373062    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
1    38049373    rs3753372    C    T    410.05    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.253;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=22.78;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373062    GT:AD:DP:GQ:PL    0/1:5,13:18:99:440,0,157
1    38049552    rs6426024    C    G    1388.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373062    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1421,108,0
1    38052867    rs11463772    C    CA    397.94    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=37;FS=2.783;HRun=13;HaplotypeScore=179.3756;IndelType=I;MQ=54.8;MQ0=0;MQRankSum=0.595;QD=10.76;ReadPosRankSum=0.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463351    GT:AD:DP:GQ:PL    0/1:25,11:37:99:437,0,118
1    38061572    rs6697632    G    T    126.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373062    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
1    38078300    rs4652964    A    G    327.89    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.208;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=12.61;ReadPosRankSum=-0.778;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356545    GT:AD:DP:GQ:PL    0/1:15,11:26:99:358,0,493
1    38078630    rs55852308    A    T    616.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=-1.028;QD=17.62;ReadPosRankSum=-0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356545    GT:AD:DP:GQ:PL    0/1:14,21:35:99:647,0,400
1    38082122    rs12039431    G    A    153.48    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.25;MQ0=0;MQRankSum=-0.529;QD=9.59;ReadPosRankSum=2.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356545    GT:AD:DP:GQ:PL    0/1:7,9:16:99:183,0,216
1    38082123    rs12046650    C    T    140.33    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.25;MQ0=0;MQRankSum=0.635;QD=8.77;ReadPosRankSum=1.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356545    GT:AD:DP:GQ:PL    0/1:7,9:16:99:170,0,230
1    38148765    rs684260    A    G    1060.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=34.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461359    GT:AD:DP:GQ:PL    1/1:0,31:31:84.23:1094,84,0
1    38149193    rs686083    C    T    335.14    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.469;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=15.23;ReadPosRankSum=0.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461359    GT:AD:DP:GQ:PL    0/1:9,13:22:99:365,0,297
1    38155141    rs10627952    G    GGT    758.26    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.017;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=87.5447;IndelType=I;MQ=60.31;MQ0=0;MQRankSum=1.617;QD=21.66;ReadPosRankSum=-1.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472584    GT:AD:DP:GQ:PL    0/1:20,15:35:99:797,0,846
1    38155265    rs586252    G    C    1310.01    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.764;DB;DP=116;Dels=0.0;FS=3.486;HRun=0;HaplotypeScore=1.8273;MQ=60.0;MQ0=0;MQRankSum=-0.24;QD=11.29;ReadPosRankSum=2.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472584    GT:AD:DP:GQ:PL    0/1:69,47:116:99:1340,0,2005
1    38161694    rs615530    A    G    325.11    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.474;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=19.12;ReadPosRankSum=-0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327331    GT:AD:DP:GQ:PL    0/1:5,12:17:99:355,0,156
1    38164724    rs557290    C    G    126.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.709;QD=8.42;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327331    GT:AD:DP:GQ:PL    0/1:6,9:15:99:156,0,142
1    38166022    rs513826    T    C    272.88    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.74;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=11.86;ReadPosRankSum=0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327331    GT:AD:DP:GQ:PL    0/1:14,9:23:99:303,0,464
1    38166327    rs661460    A    T    55.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=9.25;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327331    GT:AD:DP:GQ:PL    0/1:3,3:6:85.51:86,0,103
1    38171370    rs776050    G    A    100.77    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.684;QD=12.6;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327331    GT:AD:DP:GQ:PL    0/1:3,5:8:99:131,0,104
1    38174185    rs557897    G    T    176.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327331    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
1    38181503    rs7512242    C    T    480.34    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=35;Dels=0.0;FS=12.441;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=0.55;QD=13.72;ReadPosRankSum=0.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373048    GT:AD:DP:GQ:PL    0/1:20,15:35:99:510,0,615
1    38184316    rs609437    T    C    251.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.669;QD=11.45;ReadPosRankSum=-1.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453577    GT:AD:DP:GQ:PL    0/1:11,11:22:99:282,0,333
1    38185409    rs900677    C    G    41.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.99;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453577    GT:AD:DP:GQ:PL    0/1:2,4:6:69.20:72,0,69
1    38185647    rs2170809    G    A    576.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.081;DB;DP=50;Dels=0.0;FS=2.444;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.261;QD=11.53;ReadPosRankSum=-0.199;SNPEFF_AMINO_ACID_CHANGE=F327;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38185581_38185730;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:30,20:50:99:607,0,720
1    38185723    rs6670599    C    T    389.39    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.989;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4875;MQ=58.2;MQ0=0;MQRankSum=1.763;QD=9.98;ReadPosRankSum=-0.414;SNPEFF_AMINO_ACID_CHANGE=R302Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38185581_38185730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:22,17:39:99:419,0,517
1    38186206    rs12726343    C    G    125.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=11.45;ReadPosRankSum=0.825;SNPEFF_AMINO_ACID_CHANGE=V238;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38186023_38186226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:6,5:11:99:156,0,197
1    38186310    rs12729055    G    A    67.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.29;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453577    GT:AD:DP:GQ:PL    0/1:3,3:6:91.12:98,0,91
1    38187447    rs579908    A    G    199.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.998;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=12.5;ReadPosRankSum=0.053;SNPEFF_AMINO_ACID_CHANGE=H172;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38187332_38187517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:8,8:16:99:230,0,264
1    38187453    rs33970734    G    A    154.58    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=10.31;ReadPosRankSum=-0.174;SNPEFF_AMINO_ACID_CHANGE=A170;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38187332_38187517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:8,7:15:99:185,0,258
1    38188604    rs7517651    C    T    105.21    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=10.52;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:4,6:10:99:135,0,144
1    38188697    rs16824420    T    C    473.11    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.644;DB;DP=35;Dels=0.0;FS=1.348;HRun=2;HaplotypeScore=0.9867;MQ=59.47;MQ0=0;MQRankSum=-1.964;QD=13.52;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:18,17:35:99:503,0,481
1    38188740    rs12405650    C    T    587.35    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.053;DB;DP=43;Dels=0.0;FS=4.461;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.935;QD=13.66;ReadPosRankSum=1.154;SNPEFF_AMINO_ACID_CHANGE=V140I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38188713_38188838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:22,21:43:99:617,0,606
1    38188768    rs17464871    C    T    545.81    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.861;DB;DP=36;Dels=0.0;FS=3.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=15.16;ReadPosRankSum=-0.834;SNPEFF_AMINO_ACID_CHANGE=L130;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38188713_38188838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:15,21:36:99:576,0,480
1    38188787    rs17511304    A    G    507.40    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.804;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.902;QD=14.92;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=L124P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38188713_38188838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:15,19:34:99:537,0,492
1    38188880    rs11582856    C    T    403.69    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=0.141;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.916;QD=18.35;ReadPosRankSum=0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:7,15:22:99:434,0,187
1    38188934    rs11577529    T    C    239.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=11.99;ReadPosRankSum=-0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330210    GT:AD:DP:GQ:PL    0/1:10,10:20:99:270,0,235
1    38226964    rs55695553    C    T    1053.01    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=88;Dels=0.01;FS=18.619;HRun=2;HaplotypeScore=5.6995;MQ=58.16;MQ0=0;MQRankSum=1.142;QD=11.83;ReadPosRankSum=-0.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373048    GT:AD:DP:GQ:PL    0/1:46,41:88:99:1083,0,1237
1    38227086    rs4653328    A    T    1030.02    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.51;DB;DP=74;Dels=0.0;FS=18.838;HRun=0;HaplotypeScore=3.1455;MQ=58.74;MQ0=0;MQRankSum=-1.651;QD=13.92;ReadPosRankSum=-0.254;SNPEFF_AMINO_ACID_CHANGE=F281I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38225944_38227755;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPHA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319637    GT:AD:DP:GQ:PL    0/1:37,36:74:99:1060,0,842
1    38260503    rs2306627    C    T    107.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.825;QD=8.93;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANEAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373045    GT:AD:DP:GQ:PL    0/1:6,6:12:99:137,0,123
1    38272307    rs28701975    G    C    79.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.92;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YRDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373044    GT:AD:DP:GQ:PL    0/1:2,3:5:68.83:110,0,69
1    38301220    rs28378413    G    A    112.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.75;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373036    GT:AD:DP:GQ:PL    0/1:2,4:6:62.38:142,0,62
1    38301250    rs3912368    A    G    96.37    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.71;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373036    GT:AD:DP:GQ:PL    0/1:3,5:9:99:126,0,102
1    38301476    rs3762359    G    A    129.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=58.05;MQ0=0;MQRankSum=0.143;QD=10.83;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373036    GT:AD:DP:GQ:PL    0/1:6,6:12:99:160,0,114
1    38327935    rs34544728    CAG    C    752.04    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=4.424;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=153.5805;IndelType=D;MQ=58.97;MQ0=0;MQRankSum=1.588;QD=25.07;ReadPosRankSum=1.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470364    GT:AD:DP:GQ:PL    0/1:12,18:30:99:791,0,591
1    38327982    rs3843    G    T    1039.81    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.038;DB;DP=55;Dels=0.0;FS=1.187;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=0.499;QD=18.91;ReadPosRankSum=-0.516;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470364    GT:AD:DP:GQ:PL    0/1:20,35:55:99:1070,0,608
1    38332074    rs149926262    TCTCTCACA    T    611.21    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=139.151;IndelType=D;MQ=41.15;MQ0=0;MQRankSum=-1.164;QD=38.2;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470364    GT:AD:DP:GQ:PL    0/1:6,8:16:99:650,0,399
1    38334317    rs2306425    T    A    107.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=7.69;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373023    GT:AD:DP:GQ:PL    0/1:7,7:14:99:138,0,216
1    38334318    rs56217551    C    A    107.70    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=8.28;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373023    GT:AD:DP:GQ:PL    0/1:7,6:13:99:138,0,214
1    38338795    rs11488569    A    G    733.67    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.53;DB;DP=60;Dels=0.0;FS=7.082;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.059;QD=12.23;ReadPosRankSum=1.598;SNPEFF_AMINO_ACID_CHANGE=M501T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38338602_38338837;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373027    GT:AD:DP:GQ:PL    0/1:31,29:60:99:764,0,923
1    38341518    rs12752414    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    38345896    rs2306427    A    C    539.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.345;DB;DP=44;Dels=0.0;FS=10.79;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.813;QD=12.27;ReadPosRankSum=0.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373023    GT:AD:DP:GQ:PL    0/1:24,20:44:99:570,0,820
1    38352849    rs2279261    G    C    259.02    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=24;Dels=0.0;FS=2.114;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=10.79;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373023    GT:AD:DP:GQ:PL    0/1:14,10:24:99:289,0,496
1    38355103    rs2291161    G    T    128    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.485;QD=9.14;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373023    GT:AD:DP:GQ:PL    0/1:8,6:14:99:158,0,294
1    38397390    .    T    C    128.84    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.161;DP=23;Dels=0.0;FS=4.771;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.13;QD=5.6;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=R243G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38394209_38397725;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373021    GT:AD:DP:GQ:PL    0/1:15,8:23:99:159,0,504
1    38423853    rs9293    G    C    1102.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487062    GT:AD:DP:GQ:PL    1/1:0,36:36:81.27:1135,81,0
1    38425724    rs17531342    T    C    486.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=24.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373019    GT:AD:DP:GQ:PL    1/1:0,20:20:42.13:519,42,0
1    38425895    rs28675056    T    C    500.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373019    GT:AD:DP:GQ:PL    1/1:0,21:21:48.11:533,48,0
1    38434919    rs4653342    C    T    364.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460925    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:397,33,0
1    38442547    rs10890216    G    A    1745.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=33.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461869    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1779,135,0
1    38444749    rs7555461    T    C    1459.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=33.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470585    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1493,114,0
1    38447234    rs7519426    T    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462258    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    38447266    rs7512424    C    T    325.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462258    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
1    38447615    rs7533079    G    T    346.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462258    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:380,33,0
1    38449910    rs11210870    T    C    370.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_AMINO_ACID_CHANGE=E133;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38449841_38449932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373019    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:403,30,0
1    38450367    rs6680796    A    G    1734.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.557;QD=30.98;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373019    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1768,141,0
1    38453576    rs10890285    A    C    512.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373019    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:545,45,0
1    38455389    rs3935867    C    T    322.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373019    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:356,27,0
1    38462898    rs4274021    T    A    303.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477194    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:336,27,0
1    38462905    rs12724533    C    G    344.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477194    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:378,33,0
1    38463504    rs7366048    C    T    2342.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.67;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=P180;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_38463356_38463542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373016    GT:AD:DP:GQ:PL    1/1:0,69:70:99:2375,175,0
1    38464639    rs4570384    C    G    1296.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.45;MQ0=0;QD=38.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373016    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1329,99,0
1    38483296    rs71905376    A    ATT    471.09    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=3.441;DB;DP=29;FS=5.166;HRun=13;HaplotypeScore=241.1909;IndelType=I;MQ=48.61;MQ0=0;MQRankSum=-1.37;QD=16.24;ReadPosRankSum=-1.704;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UTP11L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486563    GT:AD:DP:GQ:PL    0/1:12,9:29:99:510,0,101
1    38489024    rs41302748    A    G    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UTP11L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483182    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    39322323    rs4360495    C    G    90.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAGC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373001    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    39340282    rs880303    C    T    2041.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.901;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.7;MQ0=0;MQRankSum=0.02;QD=32.41;ReadPosRankSum=0.176;SNPEFF_AMINO_ACID_CHANGE=V497I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39339739_39341865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357771    GT:AD:DP:GQ:PL    1/1:2,61:63:99:2075,115,0
1    39352083    rs4491033    T    G    473.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357771    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:507,39,0
1    39352271    rs2147914    G    T    3060.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.062;DB;DP=93;Dels=0.0;FS=3.25;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=32.91;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=L273M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39351968_39352355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289248    GT:AD:DP:GQ:PL    1/1:1,92:93:99:3094,187,0
1    39352492    rs3790441    G    A    462.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289248    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:496,39,0
1    39358600    rs12037982    G    A    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289248    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    39361615    rs9438984    G    A    801.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289248    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:835,63,0
1    39384626    .    G    A    635.27    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.316;QD=10.77;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289248    GT:AD:DP:GQ:PL    0/1:35,24:59:99:665,0,976
1    39385086    rs7522863    A    C    207    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289248    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
1    39457293    rs111311750    T    C    33.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKIRIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372975    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
1    39466626    rs11205525    A    G    2094.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKIRIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372975    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2127,181,0
1    39466786    rs10888613    C    G    2467.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=33.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKIRIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529075    GT:AD:DP:GQ:PL    1/1:0,73:74:99:2501,190,0
1    39494666    rs111836713    C    CT    75.81    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=1.324;DB;DP=19;FS=0.0;HRun=15;HaplotypeScore=155.4741;IndelType=I;MQ=52.58;MQ0=0;MQRankSum=-0.34;QD=3.99;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372967    GT:AD:DP:GQ:PL    0/1:12,5:19:49.46:115,0,49
1    39494687    rs3768323    G    A    315    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.32;MQ0=0;QD=26.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372967    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:348,27,0
1    39494760    rs3768322    G    A    128.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372967    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
1    39549983    rs3736890    G    A    623.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.603;DB;DP=52;Dels=0.0;FS=13.823;HRun=0;HaplotypeScore=0.5784;MQ=59.56;MQ0=0;MQRankSum=0.117;QD=11.99;ReadPosRankSum=0.487;SNPEFF_AMINO_ACID_CHANGE=S31;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39549839_39550110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    0/1:28,24:52:99:654,0,812
1    39550210    rs260972    C    T    532.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:565,45,0
1    39550261    rs76104968    C    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    0/1:2,2:4:59.04:71,0,59
1    39696647    rs2490951    G    A    765.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:799,60,0
1    39696718    rs1932507    C    A    913.03    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.737;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.63;MQ0=0;MQRankSum=-0.014;QD=14.73;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    0/1:33,29:62:99:943,0,1154
1    39757799    rs16826036    G    C    326.41    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.236;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.462;QD=13.06;ReadPosRankSum=-0.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484393    GT:AD:DP:GQ:PL    0/1:12,13:25:99:356,0,423
1    39758955    rs2484749    A    G    430.99    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.031;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.343;QD=16.58;ReadPosRankSum=-0.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    0/1:10,16:26:99:461,0,350
1    39759367    rs113962165    AGCTTGGGTG    A    458.36    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=162.4108;IndelType=D;MQ=50.72;MQ0=0;MQRankSum=-3.419;QD=21.83;ReadPosRankSum=1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    0/1:15,6:21:99:497,0,1697
1    39766041    rs41270803    A    G    367.54    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.127;DB;DP=19;Dels=0.0;FS=4.337;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=19.34;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    0/1:7,12:19:99:398,0,237
1    39788761    rs79668525    C    G    149.86    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.037;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.15;MQ0=0;MQRankSum=1.364;QD=6.81;ReadPosRankSum=-0.995;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524432    GT:AD:DP:GQ:PL    0/1:16,6:22:99:180,0,552
1    39797055    rs16826069    A    G    957.60    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.727;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.83;MQ=60.0;MQ0=0;MQRankSum=0.474;QD=11.13;ReadPosRankSum=0.545;SNPEFF_AMINO_ACID_CHANGE=I1604V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39796875_39802325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372915    GT:AD:DP:GQ:PL    0/1:49,37:86:99:988,0,1590
1    39799912    rs75770915    C    T    937.42    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=2.287;DB;DP=66;Dels=0.0;FS=3.501;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.077;QD=14.2;ReadPosRankSum=-0.565;SNPEFF_AMINO_ACID_CHANGE=T2556M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39796875_39802325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372915    GT:AD:DP:GQ:PL    0/1:35,31:66:99:967,0,1075
1    39801815    rs41270807    A    C    785.42    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.782;DB;DP=64;Dels=0.0;FS=5.166;HRun=0;HaplotypeScore=2.9992;MQ=59.42;MQ0=0;MQRankSum=-0.243;QD=12.27;ReadPosRankSum=-1.376;SNPEFF_AMINO_ACID_CHANGE=K1625N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39796810_39802325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:35,29:64:99:815,0,1130
1    39806610    rs3116396    C    T    1488.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=C1962;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39806476_39806625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1522,114,0
1    39812518    rs16826087    C    T    100.01    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=12.5;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:3,5:8:94.95:130,0,95
1    39812620    rs2490944    G    T    970.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.7579;MQ=59.23;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1003,78,0
1    39812822    rs2761764    C    A    2581.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9831;MQ=59.36;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=A2025;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39812649_39812882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2614,193,0
1    39815143    rs16826093    T    A    498.59    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.311;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=2.038;QD=9.59;ReadPosRankSum=1.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:30,22:52:99:529,0,815
1    39815344    rs41270811    G    A    141.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=14.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:4,6:10:99:172,0,139
1    39823032    rs150882596    A    AT    563.71    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.211;DB;DP=46;FS=1.317;HRun=9;HaplotypeScore=131.4011;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=0.97;QD=12.25;ReadPosRankSum=-0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:24,22:46:99:603,0,394
1    39824718    rs2256614    C    G    930.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530262    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:964,72,0
1    39826391    rs10632223    A    ATTAT    710.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=43.5451;IndelType=I;MQ=52.6;MQ0=0;QD=59.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530262    GT:AD:DP:GQ:PL    1/1:2,8:12:33.11:753,33,0
1    39833675    rs111840698    GT    G    241.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=71.5007;IndelType=D;MQ=54.46;MQ0=0;QD=21.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:2,9:11:30.03:283,30,0
1    39835540    rs582883    T    C    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    39835817    rs2296172    A    G    473.24    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.079;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.92;ReadPosRankSum=-1.247;SNPEFF_AMINO_ACID_CHANGE=M2290V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39835702_39835858;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    0/1:16,18:34:99:503,0,448
1    39838174    rs80197726    T    C    745.97    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.802;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.557;QD=14.63;ReadPosRankSum=0.085;SNPEFF_AMINO_ACID_CHANGE=S2311;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39838151_39838268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317713    GT:AD:DP:GQ:PL    0/1:24,27:51:99:776,0,768
1    39843958    rs663449    G    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476350    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
1    39844708    rs660293    T    C    1157.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:0,29:29:87.29:1190,87,0
1    39845296    rs79522721    T    G    491.28    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.89;MQ0=0;MQRankSum=1.032;QD=23.39;ReadPosRankSum=0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:5,16:21:99:521,0,141
1    39851009    rs112451431    C    T    31.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.39;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:3,2:5:61.94:62,0,108
1    39878815    rs1746842    A    G    531.56    PASS    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.415;QD=19.69;ReadPosRankSum=-1.134;SNPEFF_AMINO_ACID_CHANGE=I824V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39876151_39882154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-562N20.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530275    GT:AD:DP:GQ:PL    0/1:7,20:27:99:562,0,174
1    39879340    rs141110458    G    C    89.12    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=16;Dels=0.0;FS=6.421;HRun=1;HaplotypeScore=0.9983;MQ=52.45;MQ0=1;MQRankSum=-0.071;QD=5.57;ReadPosRankSum=0.071;SNPEFF_AMINO_ACID_CHANGE=A999P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39876151_39882154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-562N20.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530275    GT:AD:DP:GQ:PL    0/1:11,5:16:99:119,0,276
1    39879366    rs604316    T    C    586.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.5613;MQ=51.15;MQ0=1;QD=25.5;SNPEFF_AMINO_ACID_CHANGE=P1007;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39876151_39882154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-562N20.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530275    GT:AD:DP:GQ:PL    1/1:0,22:23:51.13:619,51,0
1    39879405    .    C    T    59.85    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.258;DP=22;Dels=0.0;FS=5.843;HRun=0;HaplotypeScore=4.825;MQ=54.21;MQ0=0;MQRankSum=-1.88;QD=2.72;ReadPosRankSum=0.405;SNPEFF_AMINO_ACID_CHANGE=S1020;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39876151_39882154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-562N20.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530275    GT:AD:DP:GQ:PL    0/1:16,6:22:89.84:90,0,424
1    39879419    .    T    C    52.75    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8288;MQ=53.92;MQ0=0;MQRankSum=-3.287;QD=2.51;ReadPosRankSum=-0.324;SNPEFF_AMINO_ACID_CHANGE=V1025A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39876151_39882154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-562N20.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530275    GT:AD:DP:GQ:PL    0/1:16,5:21:82.74:83,0,441
1    39880274    rs783823    A    G    334.03    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=18.56;ReadPosRankSum=1.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:7,11:18:99:364,0,239
1    39880319    rs3768302    T    G    63.13    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=7.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:5,4:9:93.13:93,0,182
1    39889677    rs663892    G    A    2621.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=37.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2654,196,0
1    39893093    rs625384    C    T    1883.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1916,153,0
1    39894811    rs2995513    T    C    213.70    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=16.44;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482035    GT:AD:DP:GQ:PL    0/1:6,7:13:99:244,0,212
1    39894839    rs645061    A    G    854.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482035    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:887,66,0
1    39895367    rs184254180    A    G    114.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.312;QD=8.77;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482035    GT:AD:DP:GQ:PL    0/1:6,7:13:99:144,0,205
1    39895460    rs683135    G    A    1616.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482035    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1649,123,0
1    39908506    rs587404    G    A    725.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=A4220T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39908386_39908583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539005    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:758,57,0
1    39910684    rs617577    T    C    111.34    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.27;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469490    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:141,0,28
1    39913351    rs2296173    A    G    485.94    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.37;DB;DP=45;Dels=0.0;FS=6.422;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.691;QD=10.8;ReadPosRankSum=-1.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:28,17:45:99:516,0,858
1    39913643    rs783837    C    G    451.70    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.949;QD=21.51;ReadPosRankSum=1.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:6,14:21:99:482,0,178
1    39914363    rs668556    G    C    2409.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=S4540T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39914266_39914435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539005    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2442,181,0
1    39917888    rs1746838    C    A    3477.33    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=7.04;DB;DP=204;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.3888;MQ=59.89;MQ0=0;MQRankSum=1.323;QD=17.05;ReadPosRankSum=0.589;SNPEFF_AMINO_ACID_CHANGE=R4638;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39917828_39918022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539005    GT:AD:DP:GQ:PL    0/1:91,113:204:99:3477,0,2575
1    39919234    rs687848    A    G    146.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:179,15,0
1    39923894    rs145179040    T    A    83.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487656    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:114,0,28
1    39927507    rs783820    G    A    619.72    PASS    AB=0.328;AC=1;AF=0.50;AN=2;BaseQRankSum=1.155;DB;DP=63;Dels=0.03;FS=3.169;HRun=2;HaplotypeScore=6.3986;MQ=47.79;MQ0=0;MQRankSum=0.19;QD=9.53;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289893    GT:AD:DP:GQ:PL    0/1:20,41:63:99:650,0,515
1    39934713    rs6698781    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497964    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    39957913    rs4660269    A    G    80.56    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.477;DB;DP=17;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.264;QD=4.74;ReadPosRankSum=1.107;SNPEFF_AMINO_ACID_CHANGE=M84V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_39957318_39957997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331593    GT:AD:DP:GQ:PL    0/1:12,5:17:99:111,0,386
1    39977258    .    A    C    80.38    MQFilter40    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.9;MQ0=7;MQRankSum=1.517;QD=5.36;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331593    GT:AD:DP:GQ:PL    0/1:8,7:15:32.35:110,0,32
1    39981522    .    G    A    193.13    MQFilter40    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=0.116;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.3;MQ0=32;MQRankSum=-0.599;QD=2.22;ReadPosRankSum=-0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331593    GT:AD:DP:GQ:PL    0/1:64,23:87:99:223,0,848
1    39987899    rs710910    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331593    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    39988231    rs150437571    A    G    246.56    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.247;DB;DP=22;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=0.0;MQ=48.39;MQ0=2;MQRankSum=-1.096;QD=11.21;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331593    GT:AD:DP:GQ:PL    0/1:12,10:22:99:277,0,344
1    39991588    rs3738676    G    T    198.72    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=57.9;MQ0=0;MQRankSum=-1.179;QD=22.08;ReadPosRankSum=0.762;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331593    GT:AD:DP:GQ:PL    0/1:2,7:9:57.17:229,0,57
1    40028180    rs4660293    A    G    76.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=12.7;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PABPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461578    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,107
1    40035686    rs17513135    C    T    275.57    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=29;Dels=0.0;FS=6.037;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.548;QD=9.5;ReadPosRankSum=-0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PABPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451091    GT:AD:DP:GQ:PL    0/1:16,13:29:99:306,0,574
1    40036847    rs2293476    G    C    1544.69    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.236;DB;DP=77;Dels=0.0;FS=11.633;HRun=1;HaplotypeScore=0.7887;MQ=59.16;MQ0=0;MQRankSum=-0.505;QD=20.06;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PABPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451091    GT:AD:DP:GQ:PL    0/1:28,49:77:99:1575,0,726
1    40096053    rs1148945    T    C    1198.89    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.436;DB;DP=67;Dels=0.0;FS=1.536;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.37;QD=17.89;ReadPosRankSum=0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372852    GT:AD:DP:GQ:PL    0/1:26,41:67:99:1229,0,767
1    40098328    rs784625    T    C    4163.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4282;MQ=59.33;MQ0=0;QD=30.84;SNPEFF_AMINO_ACID_CHANGE=H19R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40098321_40098387;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEYL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535435    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4163,328,0
1    40137754    rs2871601    G    A    425.10    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.535;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.658;QD=20.24;ReadPosRankSum=-1.973;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235628    GT:AD:DP:GQ:PL    0/1:6,15:21:99:455,0,193
1    40149515    rs784633    A    G    235.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372844    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:268,24,0
1    40149551    rs11206617    G    C    222.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.844;QD=12.36;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372844    GT:AD:DP:GQ:PL    0/1:8,10:18:99:253,0,220
1    40149642    rs784634    G    T    826.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=R107;SNPEFF_CODON_CHANGE=cgC/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40149609_40149824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450300    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:860,63,0
1    40149870    rs113763288    C    G    125.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372844    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
1    40149875    rs113459798    C    T    123.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372844    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
1    40150156    rs9662128    G    A    259.16    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=21;Dels=0.0;FS=7.701;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.599;QD=12.34;ReadPosRankSum=-0.246;SNPEFF_AMINO_ACID_CHANGE=S32;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40150114_40150167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450300    GT:AD:DP:GQ:PL    0/1:10,11:21:99:289,0,242
1    40150370    rs2746058    C    T    252.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372844    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:285,21,0
1    40207169    rs497333    T    G    700.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324379    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:734,57,0
1    40209408    rs491164    A    G    381.91    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.921;QD=20.1;ReadPosRankSum=-0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456578    GT:AD:DP:GQ:PL    0/1:6,13:19:99:412,0,187
1    40214525    rs7520588    T    A    173.98    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.304;QD=8.7;ReadPosRankSum=-1.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470018    GT:AD:DP:GQ:PL    0/1:9,11:20:99:204,0,317
1    40214944    rs7518431    A    G    92.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.72;QD=15.39;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470018    GT:AD:DP:GQ:PL    0/1:2,4:6:60.54:122,0,61
1    40219065    rs1046988    C    T    237.12    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=17;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=13.95;ReadPosRankSum=1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372827    GT:AD:DP:GQ:PL    0/1:8,9:17:99:267,0,249
1    40226046    rs12094291    G    A    676.13    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=3.643;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6584;MQ=58.25;MQ0=0;MQRankSum=1.941;QD=16.9;ReadPosRankSum=-1.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397360    GT:AD:DP:GQ:PL    0/1:17,23:40:99:706,0,360
1    40229297    rs71060328    A    AC    511.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=74.6637;IndelType=I;MQ=42.23;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372827    GT:AD:DP:GQ:PL    1/1:0,16:13:39.13:553,39,0
1    40229319    rs493473    G    A    577.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.06;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372827    GT:AD:DP:GQ:PL    1/1:0,20:20:51.13:611,51,0
1    40229368    rs2463260    A    G    238.04    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=30;Dels=0.0;FS=2.607;HRun=1;HaplotypeScore=0.0;MQ=47.02;MQ0=1;MQRankSum=-4.583;QD=7.93;ReadPosRankSum=0.373;SNPEFF_AMINO_ACID_CHANGE=S347P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40229223_40229463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397360    GT:AD:DP:GQ:PL    0/1:16,14:30:99:268,0,531
1    40230531    rs115705483    C    T    312.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.6;MQ0=5;QD=18.38;SNPEFF_AMINO_ACID_CHANGE=G275S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40230521_40230680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397360    GT:AD:DP:GQ:PL    1/1:5,12:17:36.04:346,36,0
1    40253726    rs230328    C    T    67.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.6;MQ0=1;QD=16.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372827    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:99,9,0
1    40253768    rs60164088    C    CA    222.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=54.923;IndelType=I;MQ=32.38;MQ0=1;QD=27.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372827    GT:AD:DP:GQ:PL    1/1:0,8:6:18.06:265,18,0
1    40253786    rs230329    C    T    204.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.48;MQ0=1;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372827    GT:AD:DP:GQ:PL    1/1:0,10:10:21.05:237,21,0
1    40307719    rs230310    A    G    174.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467774    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
1    40313107    rs79540048    G    A    125.24    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=8.95;ReadPosRankSum=0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469476    GT:AD:DP:GQ:PL    0/1:9,5:14:99:155,0,333
1    40319587    rs2294814    A    C    206.51    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.54;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.47;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046894    GT:AD:DP:GQ:PL    0/1:11,7:18:99:236,0,402
1    40349131    rs3845570    G    A    255.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=21.26;ReadPosRankSum=-0.6;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40348990_40349177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000046894    GT:AD:DP:GQ:PL    0/1:4,8:12:99:285,0,107
1    40363054    rs3134614    G    C    1569.06    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=109;Dels=0.0;FS=3.582;HRun=0;HaplotypeScore=2.5558;MQ=59.58;MQ0=0;MQRankSum=1.468;QD=14.4;ReadPosRankSum=-0.39;SNPEFF_AMINO_ACID_CHANGE=T362S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40362899_40363642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372816    GT:AD:DP:GQ:PL    0/1:56,53:109:99:1599,0,1727
1    40524866    rs3122417    T    C    330.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340450    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
1    40533266    rs11207440    T    G    866.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.65;MQ0=0;QD=27.94;SNPEFF_AMINO_ACID_CHANGE=C206G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40533212_40533389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538246    GT:AD:DP:GQ:PL    1/1:0,31:31:75.19:899,75,0
1    40533287    rs6665926    T    G    595.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.38;MQ0=0;QD=22.92;SNPEFF_AMINO_ACID_CHANGE=C213G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40533212_40533389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538246    GT:AD:DP:GQ:PL    1/1:0,26:26:54.15:629,54,0
1    40533315    rs6665933    T    G    643.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.13;MQ0=0;QD=23.84;SNPEFF_AMINO_ACID_CHANGE=I222S;SNPEFF_CODON_CHANGE=aTt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40533212_40533389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538246    GT:AD:DP:GQ:PL    1/1:0,27:27:57.17:677,57,0
1    40533320    rs6665936    T    G    556.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.03;MQ0=0;QD=21.39;SNPEFF_AMINO_ACID_CHANGE=C224G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40533212_40533389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538246    GT:AD:DP:GQ:PL    1/1:0,26:26:51.14:589,51,0
1    40533326    rs6665937    T    G    602.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.45;MQ0=0;QD=22.33;SNPEFF_AMINO_ACID_CHANGE=Y100D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40533212_40533389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372794    GT:AD:DP:GQ:PL    1/1:0,27:27:54.15:636,54,0
1    40533347    rs6665944    T    G    632.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=28.76;SNPEFF_AMINO_ACID_CHANGE=S107A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40533212_40533389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372794    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:666,54,0
1    40535067    rs3131664    T    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414281    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    40536074    rs58190778    C    CT    1397.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=57.4471;IndelType=I;MQ=61.07;MQ0=0;QD=46.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414281    GT:AD:DP:GQ:PL    1/1:0,30:30:90.31:1440,90,0
1    40540102    rs111979219    G    C    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340450    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
1    40545964    rs3122428    T    G    2598.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7883;MQ=60.0;MQ0=0;QD=37.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372779    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2632,202,0
1    40555321    rs3131651    C    T    314.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372779    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:348,27,0
1    40556922    rs3122439    T    C    261.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372779    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:295,24,0
1    40557656    rs6672053    G    A    995.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372779    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1029,75,0
1    40558256    rs4481840    C    G    542.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372779    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:575,42,0
1    40562993    rs6600313    T    C    355.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.39;MQ0=0;QD=27.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372779    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:388,30,0
1    40737516    rs6677717    T    G    915.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=28.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMPSTE24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472583    GT:AD:DP:GQ:PL    1/1:0,32:32:81.20:949,81,0
1    40840270    rs10645094    T    TGC    401.58    PASS    AB=0.898;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DB;DP=44;FS=12.179;HRun=0;HaplotypeScore=348.7093;IndelType=I;MQ=50.46;MQ0=0;MQRankSum=-1.313;QD=9.13;ReadPosRankSum=-0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372718    GT:AD:DP:GQ:PL    0/1:39,5:44:99:441,0,494
1    40840296    rs1965999    TGA    T    545.80    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=52;FS=1.374;HRun=0;HaplotypeScore=387.2041;IndelType=D;MQ=54.28;MQ0=0;MQRankSum=2.342;QD=10.5;ReadPosRankSum=-0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372718    GT:AD:DP:GQ:PL    0/1:30,22:52:99:585,0,487
1    40840296    rs4561032    T    A    218.42    HaplotypeScoreFilter13    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.401;DB;DP=50;Dels=0.02;FS=1.444;HRun=0;HaplotypeScore=49.6946;MQ=54.16;MQ0=0;MQRankSum=-1.782;QD=4.28;ReadPosRankSum=1.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372718    GT:AD:DP:GQ:PL    0/1:35,14:50:99:248,0,426
1    40840353    rs1003710    A    G    975.07    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.7;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.05;MQ0=0;MQRankSum=1.904;QD=12.34;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372718    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1005,0,1096
1    40872195    rs209600    G    A    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372708    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
1    40872356    rs2935889    G    A    236.96    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=34;Dels=0.0;FS=10.142;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.037;QD=6.97;ReadPosRankSum=0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372708    GT:AD:DP:GQ:PL    0/1:23,11:34:99:267,0,762
1    40872623    rs2982510    C    T    148.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.465;QD=7.41;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372708    GT:AD:DP:GQ:PL    0/1:12,8:20:99:178,0,419
1    40878508    rs209603    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372708    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    40879808    rs209605    G    T    1207.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372708    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1241,93,0
1    40879952    rs2294752    T    G    426.37    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.719;DB;DP=32;Dels=0.0;FS=6.405;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.453;QD=13.32;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372708    GT:AD:DP:GQ:PL    0/1:17,15:32:99:456,0,553
1    40880804    rs2294755    C    T    192.93    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.899;QD=8.39;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372708    GT:AD:DP:GQ:PL    0/1:13,10:23:99:223,0,471
1    40881041    rs209606    C    G    4719.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6251;MQ=59.47;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=S143;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_40880944_40881053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539317    GT:AD:DP:GQ:PL    1/1:0,145:145:99:4719,376,0
1    40955156    rs10789144    A    T    509.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF642;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372705    GT:AD:DP:GQ:PL    1/1:0,14:15:42.13:542,42,0
1    41094320    rs2076334    C    G    144.30    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=13.12;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372683    GT:AD:DP:GQ:PL    0/1:6,5:11:99:174,0,213
1    41095171    rs2076333    A    G    112.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.307;QD=12.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372683    GT:AD:DP:GQ:PL    0/1:4,5:9:99:142,0,129
1    41101572    rs2253835    A    G    454.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=25.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372683    GT:AD:DP:GQ:PL    1/1:0,18:18:39.12:488,39,0
1    41107360    rs491619    T    C    918.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372683    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:952,72,0
1    41107612    rs2076332    C    G    400.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.43;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_41107381_41107628;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372683    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:434,33,0
1    41107699    rs1534955    C    G    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372683    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    41204569    rs1057925    C    T    1140.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=S18;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_41204510_41204620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFYC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308733    GT:AD:DP:GQ:PL    1/1:0,34:34:87.27:1173,87,0
1    41215075    rs3818758    T    A    130.05    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.881;QD=14.45;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534399    GT:AD:DP:GQ:PL    0/1:4,5:9:99:160,0,126
1    41228443    rs3767954    C    G    872.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467203    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:905,69,0
1    41235177    rs10889608    G    C    463.04    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.551;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.282;QD=21.05;ReadPosRankSum=-0.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372669    GT:AD:DP:GQ:PL    0/1:7,15:22:99:493,0,221
1    41235946    rs3754176    G    A    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372669    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,71
1    41284366    rs2361660    G    C    78.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347132    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:111,9,0
1    41284520    rs2361657    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347132    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
1    41284527    rs2885330    T    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347132    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
1    41285087    rs4660468    T    C    1196.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.042;DB;DP=41;Dels=0.0;FS=4.449;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=1.056;QD=29.17;ReadPosRankSum=-0.127;SNPEFF_AMINO_ACID_CHANGE=A259;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_41285019_41285144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347132    GT:AD:DP:GQ:PL    1/1:1,40:41:57.53:1229,58,0
1    41296828    rs34287852    T    G    170.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.47;SNPEFF_AMINO_ACID_CHANGE=H401Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_41296756_41296976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509682    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:204,18,0
1    41298546    rs11421426    G    GC    285.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=15.4071;IndelType=I;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347132    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
1    41298652    rs913378    T    C    1041.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347132    GT:AD:DP:GQ:PL    1/1:0,39:39:81.25:1074,81,0
1    41301019    rs729589    T    C    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347132    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
1    41475085    rs12144160    A    G    614.10    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.257;DB;DP=38;Dels=0.0;FS=3.704;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=16.16;ReadPosRankSum=-0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372616    GT:AD:DP:GQ:PL    0/1:16,22:38:99:644,0,571
1    41481596    rs41308248    A    G    337.25    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.371;QD=22.48;ReadPosRankSum=1.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372616    GT:AD:DP:GQ:PL    0/1:4,11:15:83.98:367,0,84
1    41514150    rs2064740    C    G    77.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCMH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326197    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
1    41540853    rs2011981    A    T    2599.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCMH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326197    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2633,202,0
1    41540861    rs2011982    T    C    2310.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.39;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCMH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326197    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2343,187,0
1    41618442    rs213768    A    T    564.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=37.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCMH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326197    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:597,45,0
1    41848296    rs4359027    G    A    391.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_AMINO_ACID_CHANGE=A475T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_41847288_41849262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXO6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372591    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:424,36,0
1    41976017    rs678110    C    T    127.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429157    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
1    41976328    rs9439043    T    C    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.15;SNPEFF_AMINO_ACID_CHANGE=T2338A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_41972036_41976934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372584    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
1    41978359    rs2984693    G    T    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    41978566    rs2991344    T    G    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=D2109A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_41978487_41979421;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    41978825    rs2483689    C    G    1099.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.0;MQ0=0;QD=31.41;SNPEFF_AMINO_ACID_CHANGE=A2023P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_41978487_41979421;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,35:35:87.25:1132,87,0
1    41979156    rs615177    A    G    192.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.572;QD=24.05;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=A1912;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_41978487_41979421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    0/1:2,6:8:48.70:222,0,49
1    41983912    rs2810547    C    A    533.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:567,42,0
1    42041479    rs1815257    A    C    114.81    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.251;QD=6.75;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    0/1:11,6:17:99:145,0,330
1    42045302    rs2810564    G    A    542.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:575,42,0
1    42046812    rs2810565    C    T    1066.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=Q1219;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_42045408_42050989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,32:33:87.23:1100,87,0
1    42048745    rs2810566    T    C    1142.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=H575R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_42045408_42050989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1175,99,0
1    42049032    rs2984694    G    A    1292.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=S479;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_42045408_42050989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1326,105,0
1    42049140    rs2475842    C    G    1140.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.64;SNPEFF_AMINO_ACID_CHANGE=L443;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_42045408_42050989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    1/1:0,32:32:90.28:1174,90,0
1    42050366    rs2146315    C    T    1560.27    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.989;DB;DP=109;Dels=0.0;FS=4.805;HRun=0;HaplotypeScore=4.8874;MQ=59.36;MQ0=0;MQRankSum=1.571;QD=14.31;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=V35I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_42045408_42050989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247584    GT:AD:DP:GQ:PL    0/1:56,52:109:99:1590,0,1629
1    42619152    rs2297567    C    A    247.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.48;SNPEFF_AMINO_ACID_CHANGE=P11T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_42619092_42619211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCA2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372581    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:280,21,0
1    42629040    rs2232224    A    G    520.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357001    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:553,42,0
1    42654364    rs554500    G    A    1186.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445886    GT:AD:DP:GQ:PL    1/1:0,32:33:90.30:1219,90,0
1    42656868    rs1085252    C    G    180.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422278    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:213,18,0
1    42660356    rs571329    G    A    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422278    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    42730525    rs617824    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454417    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    42898671    rs2494376    A    G    480.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=25.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461083    GT:AD:DP:GQ:PL    1/1:1,18:19:45.12:513,45,0
1    42902142    rs143810024    T    C    781.07    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=71;Dels=0.0;FS=0.913;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.623;QD=11.0;ReadPosRankSum=-1.473;SNPEFF_AMINO_ACID_CHANGE=I113V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_42902092_42902214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433602    GT:AD:DP:GQ:PL    0/1:41,30:71:99:811,0,1336
1    42922310    .    G    C    66.19    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.31;MQ0=0;MQRankSum=-1.754;QD=4.14;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=R25P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_42922210_42922744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPCS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372560    GT:AD:DP:GQ:PL    0/1:6,10:16:88.52:96,0,89
1    42966037    rs2992346    T    C    2187.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.46;MQ0=0;QD=27.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428554    GT:AD:DP:GQ:PL    1/1:0,77:79:99:2221,183,0
1    43102792    rs16829820    G    A    186.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=20.7;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340612    GT:AD:DP:GQ:PL    0/1:3,6:9:73.99:216,0,74
1    43102844    rs16829822    T    C    233.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.111;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=12.97;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340612    GT:AD:DP:GQ:PL    0/1:10,8:18:99:263,0,356
1    43110276    rs7523056    G    A    599.05    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=4.678;DB;DP=38;Dels=0.0;FS=1.762;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.96;QD=15.76;ReadPosRankSum=-0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340612    GT:AD:DP:GQ:PL    0/1:17,21:38:99:629,0,460
1    43119661    rs16829829    C    A    319.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.448;DB;DP=32;Dels=0.0;FS=1.654;HRun=1;HaplotypeScore=1.7781;MQ=60.0;MQ0=0;MQRankSum=1.032;QD=9.99;ReadPosRankSum=1.382;SNPEFF_AMINO_ACID_CHANGE=H561N;SNPEFF_CODON_CHANGE=Cat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43119489_43119852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390640    GT:AD:DP:GQ:PL    0/1:20,12:32:99:350,0,607
1    43124701    rs6600419    A    G    63.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.59;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340612    GT:AD:DP:GQ:PL    0/1:3,3:6:93.53:94,0,96
1    43124859    rs3738494    C    T    689.64    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=50;Dels=0.0;FS=1.185;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.168;QD=13.79;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342022    GT:AD:DP:GQ:PL    0/1:23,27:50:99:720,0,735
1    43200855    rs74885359    G    A    210.62    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.762;QD=23.4;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296387    GT:AD:DP:GQ:PL    0/1:2,7:9:48.58:241,0,49
1    43212291    rs13871    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460831    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    43212431    rs4660662    A    G    284.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.47;SNPEFF_AMINO_ACID_CHANGE=G581;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43212046_43212523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540027    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:318,27,0
1    43212926    rs67014447    G    A    780.74    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.008;DB;DP=55;Dels=0.0;FS=7.421;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.093;QD=14.2;ReadPosRankSum=-0.598;SNPEFF_AMINO_ACID_CHANGE=A691V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43212046_43213083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000236040    GT:AD:DP:GQ:PL    0/1:26,29:55:99:811,0,715
1    43213285    rs72661349    C    T    846.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.763;DB;DP=52;Dels=0.0;FS=2.148;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.217;QD=16.28;ReadPosRankSum=-0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460831    GT:AD:DP:GQ:PL    0/1:26,26:52:99:877,0,856
1    43221434    rs66491111    GCT    G    129.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=45.0852;IndelType=D;MQ=62.13;MQ0=0;MQRankSum=0.361;QD=12.99;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372526    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,189
1    43223489    rs6700677    C    T    2106.69    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.056;DB;DP=155;Dels=0.0;FS=0.624;HRun=0;HaplotypeScore=2.8132;MQ=59.88;MQ0=0;MQRankSum=-0.404;QD=13.59;ReadPosRankSum=0.07;SNPEFF_AMINO_ACID_CHANGE=G214R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43223454_43223593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540027    GT:AD:DP:GQ:PL    0/1:83,72:155:99:2137,0,2602
1    43227867    rs2760070    G    A    199.99    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.66;QD=15.38;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236040    GT:AD:DP:GQ:PL    0/1:6,7:13:99:230,0,177
1    43228189    rs2816593    T    A    856.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236040    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:890,69,0
1    43232504    rs55716016    C    A    210.34    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=15;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-0.174;QD=14.02;ReadPosRankSum=0.752;SNPEFF_AMINO_ACID_CHANGE=A47S;SNPEFF_CODON_CHANGE=Gcg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43232178_43232683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPRE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000236040    GT:AD:DP:GQ:PL    0/1:8,7:15:99:240,0,254
1    43239395    rs2760075    G    A    181.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=22.7;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372525    GT:AD:DP:GQ:PL    0/1:2,6:8:59.22:212,0,59
1    43300663    rs112744081    T    C    2266.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.4;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.894;MQ=60.0;MQ0=0;MQRankSum=-0.293;QD=34.35;ReadPosRankSum=1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERMAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328249    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2300,135,0
1    43300921    rs4660673    C    G    533.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERMAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328249    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:566,42,0
1    43302971    rs1466548    C    G    257.96    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.833;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.276;QD=9.55;ReadPosRankSum=1.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERMAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328249    GT:AD:DP:GQ:PL    0/1:17,10:27:99:288,0,548
1    43306128    rs11210729    G    A    39.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.88;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERMAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328249    GT:AD:DP:GQ:PL    0/1:3,2:5:69.41:69,0,113
1    43306217    rs1466549    G    A    82.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERMAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328249    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    43395635    rs2229682    C    T    453.87    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.248;DB;DP=31;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.9947;MQ=59.25;MQ0=0;MQRankSum=0.415;QD=14.64;ReadPosRankSum=-1.549;SNPEFF_AMINO_ACID_CHANGE=P101;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43395544_43395706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439722    GT:AD:DP:GQ:PL    0/1:15,16:31:99:484,0,420
1    43396414    rs11537641    G    A    410.63    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=1.274;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.708;QD=15.79;ReadPosRankSum=-0.085;SNPEFF_AMINO_ACID_CHANGE=C133;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43395990_43396537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372500    GT:AD:DP:GQ:PL    0/1:9,17:26:99:441,0,239
1    43408966    rs1385129    G    A    59.64    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.642;QD=3.51;ReadPosRankSum=0.962;SNPEFF_AMINO_ACID_CHANGE=A15;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43408897_43408992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372500    GT:AD:DP:GQ:PL    0/1:13,4:17:89.63:90,0,389
1    43418026    rs2297972    C    T    112.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=11.26;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372500    GT:AD:DP:GQ:PL    0/1:5,5:10:99:143,0,140
1    43613786    rs519666    G    T    212.65    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.079;DB;DP=22;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=9.67;ReadPosRankSum=-0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM183A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335282    GT:AD:DP:GQ:PL    0/1:10,12:22:99:243,0,330
1    43613850    rs34514362    C    CA    164.79    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;FS=0.0;HRun=5;HaplotypeScore=30.0848;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=0.717;QD=14.98;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM183A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335282    GT:AD:DP:GQ:PL    0/1:5,6:11:99:204,0,128
1    43618596    rs12074551    G    A    1373.13    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.833;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.7;QD=14.01;ReadPosRankSum=-0.48;SNPEFF_AMINO_ACID_CHANGE=E45;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43618499_43618602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM183A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000410025    GT:AD:DP:GQ:PL    0/1:47,50:98:99:1403,0,1437
1    43632536    rs7163    C    T    987.66    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=72;Dels=0.0;FS=4.79;HRun=0;HaplotypeScore=0.9159;MQ=59.36;MQ0=0;MQRankSum=-0.443;QD=13.72;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=R223H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43632497_43632590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000236051    GT:AD:DP:GQ:PL    0/1:35,37:72:99:1018,0,925
1    43632815    rs1749438    T    G    1038.92    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=0.62;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.265;QD=15.28;ReadPosRankSum=-1.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461557    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1069,0,840
1    43632816    rs1782374    T    C    1001.67    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.221;QD=14.52;ReadPosRankSum=-1.613;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461557    GT:AD:DP:GQ:PL    0/1:29,39:69:99:1032,0,844
1    43632997    rs1691302    A    G    399.19    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.066;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.363;QD=18.14;ReadPosRankSum=0.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461557    GT:AD:DP:GQ:PL    0/1:10,12:22:99:429,0,317
1    43634867    rs11210797    C    T    67.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.52;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461557    GT:AD:DP:GQ:PL    0/1:2,3:5:64.98:98,0,65
1    43636484    rs1049276    C    G    1441.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.77;DB;DP=98;Dels=0.0;FS=1.654;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=14.71;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=T130;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43636427_43636550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000236051    GT:AD:DP:GQ:PL    0/1:49,49:98:99:1472,0,1417
1    43636692    rs1010621    T    C    235.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=19.63;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461557    GT:AD:DP:GQ:PL    0/1:4,8:12:99:266,0,128
1    43636974    rs1010620    C    T    108.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.12;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461557    GT:AD:DP:GQ:PL    0/1:2,4:6:66.40:139,0,66
1    43637549    rs1691289    A    G    362.74    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.55;MQ0=0;MQRankSum=1.007;QD=11.34;ReadPosRankSum=0.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236051    GT:AD:DP:GQ:PL    0/1:18,14:32:99:393,0,514
1    43638255    rs113994355    A    G    69.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:101,9,0
1    43638334    rs2934883    A    T    235.85    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.227;QD=14.74;ReadPosRankSum=-0.938;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:3,12:16:71.80:266,0,72
1    43638410    rs1782386    G    C    662.43    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=36;Dels=0.0;FS=5.992;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.488;QD=18.4;ReadPosRankSum=-0.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBNA1BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461557    GT:AD:DP:GQ:PL    0/1:14,22:36:99:692,0,458
1    43638457    rs1782387    T    A    480.79    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=12.65;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=V11;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43638406_43638581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:17,21:38:99:511,0,495
1    43649508    rs663824    A    G    1552.84    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.314;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.55;MQ0=0;MQRankSum=0.344;QD=15.22;ReadPosRankSum=-1.045;SNPEFF_AMINO_ACID_CHANGE=N241D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43649262_43649548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:45,57:102:99:1583,0,1547
1    43650741    rs598336    T    C    536.78    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.925;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.028;QD=20.65;ReadPosRankSum=-0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525227    GT:AD:DP:GQ:PL    0/1:10,16:26:99:567,0,305
1    43652304    .    AG    A    207.84    PASS    AB=0.9;AC=1;AF=0.50;AN=2;BaseQRankSum=0.848;DP=63;FS=9.547;HRun=1;HaplotypeScore=628.3107;IndelType=D;MQ=49.25;MQ0=0;MQRankSum=-4.458;QD=3.3;ReadPosRankSum=-1.595;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525227    GT:AD:DP:GQ:PL    0/1:56,7:63:99:247,0,559
1    43652369    rs6413971    T    C    3167.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.9;MQ0=0;QD=28.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529956    GT:AD:DP:GQ:PL    1/1:9,103:112:99:3200,247,0
1    43663376    rs513009    A    G    1727.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1760,144,0
1    43664119    rs603560    A    G    405.46    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.549;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.807;QD=13.98;ReadPosRankSum=0.982;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:15,14:29:99:435,0,494
1    43664218    rs603123    C    T    948.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=55;Dels=0.0;FS=3.85;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.4;QD=17.25;ReadPosRankSum=1.366;SNPEFF_AMINO_ACID_CHANGE=H443;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43664152_43664317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:22,33:55:99:979,0,628
1    43664319    rs112338081    TA    T    304.72    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.728;DB;DP=38;FS=5.501;HRun=10;HaplotypeScore=127.1876;IndelType=D;MQ=57.77;MQ0=0;MQRankSum=0.054;QD=8.02;ReadPosRankSum=0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:20,18:38:99:344,0,432
1    43665255    rs143705230    AAG    A    160.26    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.488;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=62.0522;IndelType=D;MQ=59.32;MQ0=0;MQRankSum=-0.38;QD=8.9;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:12,6:18:99:199,0,465
1    43672636    rs11210812    T    G    105.18    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-1.588;QD=6.57;ReadPosRankSum=-1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:7,9:16:99:135,0,201
1    43675467    rs2453412    G    A    1419.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=S603;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43675414_43675587;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1452,108,0
1    43680839    rs111455700    T    TG    485.37    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=41;FS=6.145;HRun=6;HaplotypeScore=233.1133;IndelType=I;MQ=59.7;MQ0=0;MQRankSum=0.099;QD=11.84;ReadPosRankSum=1.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528956    GT:AD:DP:GQ:PL    0/1:24,17:41:99:524,0,556
1    43680855    rs4233492    G    A    1825.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=59.58;MQ0=0;QD=33.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528956    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1858,141,0
1    43681184    rs612626    C    T    686.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528956    GT:AD:DP:GQ:PL    1/1:0,18:19:54.18:720,54,0
1    43688320    rs4660249    C    T    107.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:140,12,0
1    43688743    rs11585059    G    A    78.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.03;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,105
1    43693018    rs11587212    G    A    79.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.96;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
1    43699813    rs3820588    A    G    295.67    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.592;QD=22.74;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    0/1:3,10:13:68.13:326,0,68
1    43699935    rs2477561    C    T    1460.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1494,111,0
1    43700140    rs2483688    A    G    89.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372492    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    43738340    rs10890247    A    C    36.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_43738249_43739673;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM125;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432792    GT:AD:DP:GQ:PL    0/1:3,3:6:66.72:67,0,108
1    43771016    rs67382829    TA    T    117.94    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=41.1029;IndelType=D;MQ=61.94;MQ0=0;MQRankSum=1.92;QD=10.72;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485125    GT:AD:DP:GQ:PL    0/1:6,5:11:99:157,0,106
1    43771090    rs3120044    G    A    31.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.65;MQ0=0;MQRankSum=0.0;QD=7.76;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485125    GT:AD:DP:GQ:PL    0/1:2,2:4:61.01:61,0,61
1    43773033    rs2275180    A    G    266.68    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.341;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.341;QD=11.59;ReadPosRankSum=0.341;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485125    GT:AD:DP:GQ:PL    0/1:10,13:23:99:297,0,333
1    43774495    rs2282225    G    C    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.86;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485125    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,101
1    43774878    rs2282226    C    T    200.34    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=58.2;MQ0=0;MQRankSum=0.212;QD=15.41;ReadPosRankSum=-0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480269    GT:AD:DP:GQ:PL    0/1:5,8:13:99:230,0,172
1    43777852    rs1999595    C    T    510.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441333    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:543,42,0
1    43779564    rs3120276    T    C    405.19    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=39;Dels=0.0;FS=1.293;HRun=1;HaplotypeScore=1.5115;MQ=58.2;MQ0=0;MQRankSum=-0.429;QD=10.39;ReadPosRankSum=-0.547;SNPEFF_AMINO_ACID_CHANGE=A181;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43779449_43779639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372475    GT:AD:DP:GQ:PL    0/1:23,16:39:99:435,0,632
1    43782846    rs1198982    G    A    267.72    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.54;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.564;QD=9.56;ReadPosRankSum=-0.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461061    GT:AD:DP:GQ:PL    0/1:17,11:28:99:298,0,511
1    43784956    rs1199039    A    G    594.25    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.364;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.503;QD=12.38;ReadPosRankSum=0.503;SNPEFF_AMINO_ACID_CHANGE=L274;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43784906_43785019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536913    GT:AD:DP:GQ:PL    0/1:27,21:48:99:624,0,787
1    43812075    rs1760670    G    A    423.60    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=26;Dels=0.0;FS=5.409;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=16.29;ReadPosRankSum=1.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372468    GT:AD:DP:GQ:PL    0/1:12,14:26:99:454,0,336
1    43814864    rs839995    T    C    305.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=14.56;ReadPosRankSum=-1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372468    GT:AD:DP:GQ:PL    0/1:9,12:21:99:336,0,196
1    43825644    rs839763    T    C    1758.92    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.458;DB;DP=146;Dels=0.0;FS=1.404;HRun=1;HaplotypeScore=0.9734;MQ=57.39;MQ0=0;MQRankSum=-0.722;QD=12.05;ReadPosRankSum=1.26;SNPEFF_AMINO_ACID_CHANGE=Y120;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43825640_43825768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437896    GT:AD:DP:GQ:PL    0/1:80,66:146:99:1789,0,2289
1    43826312    rs710251    C    A    415.55    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.861;DB;DP=43;Dels=0.0;FS=1.559;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.11;QD=9.66;ReadPosRankSum=-0.426;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372458    GT:AD:DP:GQ:PL    0/1:23,20:43:99:446,0,734
1    43850473    rs11172    A    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460803    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    43855546    rs839752    A    G    816.54    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=49;Dels=0.0;FS=9.938;HRun=0;HaplotypeScore=0.8321;MQ=59.05;MQ0=0;MQRankSum=0.486;QD=16.66;ReadPosRankSum=-0.052;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139289.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310739    GT:AD:DP:GQ:PL    0/1:23,26:49:99:847,0,641
1    43855578    rs839753    G    C    406.32    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8614;MQ=58.45;MQ0=0;MQRankSum=-0.327;QD=13.54;ReadPosRankSum=-0.415;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139289.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406439    GT:AD:DP:GQ:PL    0/1:15,14:30:99:436,0,487
1    43869235    rs710249    G    C    377.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.376;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.107;QD=17.98;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139289.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310739    GT:AD:DP:GQ:PL    0/1:9,12:21:99:408,0,240
1    43881941    rs1999674    A    G    100.50    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=14.36;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139289.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406439    GT:AD:DP:GQ:PL    0/1:3,4:7:98.80:130,0,99
1    43886321    rs2782642    A    G    251.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=16.77;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372442    GT:AD:DP:GQ:PL    0/1:6,9:15:99:282,0,204
1    43886494    rs2782643    C    T    1834.23    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.675;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.82;MQ0=0;MQRankSum=-0.625;QD=14.44;ReadPosRankSum=0.986;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470139    GT:AD:DP:GQ:PL    0/1:65,62:127:99:1864,0,2155
1    43887146    rs2782644    G    A    141.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=14.18;ReadPosRankSum=1.453;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470139    GT:AD:DP:GQ:PL    0/1:5,5:10:99:172,0,177
1    43888602    rs2782645    G    A    303.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=30;Dels=0.0;FS=3.362;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.699;QD=10.13;ReadPosRankSum=0.614;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470139    GT:AD:DP:GQ:PL    0/1:18,12:30:99:334,0,598
1    43892189    rs2782646    G    A    356.13    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.318;QD=20.95;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372442    GT:AD:DP:GQ:PL    0/1:5,12:17:99:386,0,120
1    43901011    rs2039531    A    C    173.22    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.155;QD=7.22;ReadPosRankSum=0.651;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478140    GT:AD:DP:GQ:PL    0/1:14,10:24:99:203,0,360
1    43903589    rs2782648    G    T    565.25    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.863;DB;DP=43;Dels=0.0;FS=6.404;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-1.205;QD=13.15;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372442    GT:AD:DP:GQ:PL    0/1:20,23:43:99:595,0,604
1    43903695    rs2842182    A    G    76.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.69;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372442    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,100
1    43904316    rs2842184    A    G    104.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=11.61;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470897    GT:AD:DP:GQ:PL    0/1:3,6:9:96.56:135,0,97
1    43905286    rs72671125    C    T    1306.34    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.018;DB;DP=80;Dels=0.0;FS=1.842;HRun=0;HaplotypeScore=2.9896;MQ=59.24;MQ0=0;MQRankSum=0.868;QD=16.33;ReadPosRankSum=0.152;SNPEFF_AMINO_ACID_CHANGE=C1397;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43905276_43905440;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372442    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1336,0,1188
1    43905819    rs2782649    T    C    142.97    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.493;QD=10.21;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470897    GT:AD:DP:GQ:PL    0/1:8,6:14:99:173,0,247
1    43906896    rs2027130    A    G    3226.07    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=239;Dels=0.0;FS=0.992;HRun=0;HaplotypeScore=0.9578;MQ=59.9;MQ0=0;MQRankSum=-0.854;QD=13.5;ReadPosRankSum=-1.602;SNPEFF_AMINO_ACID_CHANGE=E1553;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43906885_43907051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372442    GT:AD:DP:GQ:PL    0/1:122,117:239:99:3256,0,3528
1    43908787    rs41270357    A    G    341.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.903;DB;DP=30;Dels=0.0;FS=5.946;HRun=2;HaplotypeScore=0.8941;MQ=59.23;MQ0=0;MQRankSum=0.747;QD=11.4;ReadPosRankSum=-0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470897    GT:AD:DP:GQ:PL    0/1:15,15:30:99:372,0,495
1    43909265    rs2255632    T    C    406.82    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=39;Dels=0.0;FS=3.166;HRun=0;HaplotypeScore=0.9894;MQ=59.41;MQ0=0;MQRankSum=-0.042;QD=10.43;ReadPosRankSum=-1.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471177    GT:AD:DP:GQ:PL    0/1:22,17:39:99:437,0,746
1    43912590    rs2782650    A    G    85.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=8.56;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HYI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372425    GT:AD:DP:GQ:PL    0/1:5,5:10:99:116,0,163
1    43913762    rs138585463    C    T    332.89    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.272;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9973;MQ=59.07;MQ0=0;MQRankSum=0.356;QD=13.32;ReadPosRankSum=-0.849;SNPEFF_AMINO_ACID_CHANGE=F2293;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43913750_43914155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SZT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372442    GT:AD:DP:GQ:PL    0/1:11,14:25:99:363,0,256
1    43916642    rs6954    T    C    648.88    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.394;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.167;QD=10.64;ReadPosRankSum=-0.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HYI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372425    GT:AD:DP:GQ:PL    0/1:34,27:61:99:679,0,1152
1    43917409    rs2251804    T    C    453.51    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.968;DB;DP=40;Dels=0.0;FS=1.229;HRun=0;HaplotypeScore=2.7295;MQ=58.84;MQ0=0;MQRankSum=0.382;QD=11.34;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HYI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469587    GT:AD:DP:GQ:PL    0/1:17,22:40:99:483,0,512
1    43917637    rs2251802    G    A    277.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.81;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.035;QD=12.62;ReadPosRankSum=0.246;SNPEFF_AMINO_ACID_CHANGE=D110;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_43917606_43917684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HYI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372426    GT:AD:DP:GQ:PL    0/1:11,11:22:99:308,0,320
1    44019731    rs2842185    C    T    37.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481019    GT:AD:DP:GQ:PL    0/1:3,2:5:67.95:68,0,85
1    44035093    rs2842186    A    G    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
1    44035472    rs943513    G    A    118.77    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=15;Dels=0.0;FS=2.363;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.323;QD=7.92;ReadPosRankSum=-0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:8,7:15:99:149,0,260
1    44057950    rs573350    T    C    67.37    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.684;QD=8.42;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467464    GT:AD:DP:GQ:PL    0/1:5,3:8:97.37:97,0,156
1    44070691    rs17371903    A    G    861.15    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2401;MQ=59.51;MQ0=0;MQRankSum=-0.639;QD=18.32;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:19,28:47:99:891,0,619
1    44071221    rs631248    G    A    224.35    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=24.93;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=V1128;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44071200_44071293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372413    GT:AD:DP:GQ:PL    0/1:2,7:9:47.69:254,0,48
1    44071796    rs618369    G    T    33.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:4,2:6:63.23:63,0,145
1    44071853    rs512579    T    C    239.78    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.164;QD=14.1;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:8,9:17:99:270,0,249
1    44072018    rs1065772    C    T    1514.35    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=116;Dels=0.0;FS=0.743;HRun=3;HaplotypeScore=2.4521;MQ=59.3;MQ0=0;MQRankSum=-0.904;QD=13.05;ReadPosRankSum=-0.506;SNPEFF_AMINO_ACID_CHANGE=T1188;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44071911_44072129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372413    GT:AD:DP:GQ:PL    0/1:56,60:116:99:1544,0,1803
1    44072066    rs10890266    C    T    1505.47    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.422;DB;DP=118;Dels=0.0;FS=0.692;HRun=0;HaplotypeScore=2.7599;MQ=59.61;MQ0=0;MQRankSum=1.178;QD=12.76;ReadPosRankSum=0.586;SNPEFF_AMINO_ACID_CHANGE=P1204;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44071911_44072129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372413    GT:AD:DP:GQ:PL    0/1:61,56:118:99:1535,0,1915
1    44072420    rs539096    A    G    417.61    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=27;Dels=0.0;FS=11.146;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.364;QD=15.47;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:13,14:27:99:448,0,374
1    44075227    rs517622    T    C    376.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463041    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:409,36,0
1    44078384    rs499257    T    C    427.36    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=2.502;DB;DP=57;Dels=0.0;FS=3.812;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=7.5;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:37,20:57:99:457,0,1254
1    44078602    rs3791151    C    A    255.50    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.068;QD=10.22;ReadPosRankSum=0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:14,11:25:99:285,0,481
1    44079411    rs603542    T    C    543.36    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.771;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.563;QD=12.94;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:19,23:42:99:573,0,586
1    44083015    rs653953    G    A    145.57    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.149;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.096;QD=7.66;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:13,6:19:99:176,0,418
1    44083110    rs571862    C    T    865.60    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.839;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.33;MQ0=0;MQRankSum=0.245;QD=12.54;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:37,32:69:99:896,0,1126
1    44083507    rs641365    T    C    180.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=18;Dels=0.0;FS=4.665;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=10.0;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=G1423;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44083407_44083582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372413    GT:AD:DP:GQ:PL    0/1:10,8:18:99:210,0,317
1    44083519    rs641351    G    A    170.30    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=16;Dels=0.0;FS=5.193;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.847;QD=10.64;ReadPosRankSum=0.318;SNPEFF_AMINO_ACID_CHANGE=R1427;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44083407_44083582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372413    GT:AD:DP:GQ:PL    0/1:9,7:16:99:200,0,329
1    44084739    rs1143701    C    T    550.29    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.4;MQ0=0;MQRankSum=0.211;QD=13.1;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=R1495;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44084719_44084873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372413    GT:AD:DP:GQ:PL    0/1:18,22:42:99:580,0,488
1    44086080    rs568639    T    C    604.41    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=39;Dels=0.0;FS=1.392;HRun=4;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=1.225;QD=15.5;ReadPosRankSum=2.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:18,21:39:99:634,0,561
1    44086831    rs1143702    C    T    132.64    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.02;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.68;QD=8.29;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=Y1220;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44086768_44086903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422171    GT:AD:DP:GQ:PL    0/1:11,5:16:99:163,0,314
1    44087496    rs673485    C    T    184.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.203;QD=20.5;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359947    GT:AD:DP:GQ:PL    0/1:3,6:9:88.22:214,0,88
1    44121557    rs2274465    C    G    211.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372396    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
1    44133299    rs618678    C    T    31.35    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=3.92;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463151    GT:AD:DP:GQ:PL    0/1:5,3:8:61.34:61,0,167
1    44137257    rs586339    C    A    663.89    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=51;Dels=0.0;FS=3.933;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.975;QD=13.02;ReadPosRankSum=-0.899;SNPEFF_AMINO_ACID_CHANGE=A482E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44137176_44137546;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372396    GT:AD:DP:GQ:PL    0/1:28,23:51:99:694,0,849
1    44258040    rs1502907    A    G    39.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.88;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ST3GAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262915    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:70,0,69
1    44290530    rs37458    A    G    413.28    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.693;DB;DP=27;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.607;QD=15.31;ReadPosRankSum=-0.17;SNPEFF_AMINO_ACID_CHANGE=T113A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44290403_44290564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ST3GAL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372368    GT:AD:DP:GQ:PL    0/1:14,13:27:99:443,0,437
1    44365529    rs783303    G    A    171.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ST3GAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262915    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
1    44386305    rs3120802    C    T    389.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ST3GAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461375    GT:AD:DP:GQ:PL    1/1:0,13:13:36.08:422,36,0
1    44386615    rs3120803    A    G    351.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=35.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ST3GAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461375    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:384,30,0
1    44395786    rs2108202    C    T    2018.13    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.558;DB;DP=147;Dels=0.0;FS=1.368;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.21;QD=13.73;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ST3GAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262915    GT:AD:DP:GQ:PL    0/1:77,70:147:99:2048,0,2461
1    44401384    rs2242637    A    G    487.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=Q19R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44401031_44401388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372354    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:520,39,0
1    44415415    rs2240447    C    T    358.17    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.701;DB;DP=31;Dels=0.0;FS=1.576;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.26;QD=11.55;ReadPosRankSum=0.5;SNPEFF_AMINO_ACID_CHANGE=D137;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44415089_44415825;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372343    GT:AD:DP:GQ:PL    0/1:18,13:31:99:388,0,463
1    44426025    rs2301993    G    A    775.81    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.571;DB;DP=72;Dels=0.0;FS=5.485;HRun=0;HaplotypeScore=2.7702;MQ=59.36;MQ0=0;MQRankSum=-0.785;QD=10.78;ReadPosRankSum=-2.081;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480902    GT:AD:DP:GQ:PL    0/1:41,31:72:99:806,0,1350
1    44426948    rs2906596    G    A    3522.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4007;MQ=59.04;MQ0=0;QD=29.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480902    GT:AD:DP:GQ:PL    1/1:2,119:121:99:3522,280,0
1    44432500    rs4660759    C    G    96.51    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.379;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.112;QD=4.2;ReadPosRankSum=-0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372339    GT:AD:DP:GQ:PL    0/1:18,5:23:99:126,0,624
1    44442521    rs12410334    A    C    239.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.087;DB;DP=24;Dels=0.0;FS=1.76;HRun=1;HaplotypeScore=1.8332;MQ=59.03;MQ0=0;MQRankSum=-0.202;QD=9.98;ReadPosRankSum=0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461670    GT:AD:DP:GQ:PL    0/1:12,12:24:99:269,0,393
1    44442930    rs2428954    A    G    397.93    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DB;DP=34;Dels=0.0;FS=3.812;HRun=0;HaplotypeScore=1.8273;MQ=60.0;MQ0=0;MQRankSum=0.346;QD=11.7;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=Q211;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44442698_44443885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000532642    GT:AD:DP:GQ:PL    0/1:19,15:34:99:428,0,566
1    44443459    rs2428953    G    A    111.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.98;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461670    GT:AD:DP:GQ:PL    0/1:4,4:8:92.87:142,0,93
1    44450737    rs2231283    C    G    457.15    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.247;DB;DP=32;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=0.9832;MQ=57.05;MQ0=0;MQRankSum=0.361;QD=14.29;ReadPosRankSum=-0.475;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=B4GALT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497866    GT:AD:DP:GQ:PL    0/1:14,18:32:99:487,0,333
1    44457739    rs113122769    T    TC    317.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=18.8145;IndelType=I;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=B4GALT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309519    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:360,24,0
1    44594966    rs2485653    G    A    232.28    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=40;Dels=0.0;FS=12.212;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=5.81;ReadPosRankSum=-0.593;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372299    GT:AD:DP:GQ:PL    0/1:28,12:40:99:262,0,900
1    44595047    rs11210969    T    A    1135.58    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=57;Dels=0.0;FS=8.007;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.05;QD=19.92;ReadPosRankSum=-0.389;SNPEFF_AMINO_ACID_CHANGE=I35N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44595025_44595868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372299    GT:AD:DP:GQ:PL    0/1:21,36:57:99:1166,0,581
1    44595113    rs2429051    G    C    1462.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6647;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=S57T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44595025_44595868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372299    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1496,114,0
1    44595410    rs2485652    A    G    792.96    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=51;Dels=0.0;FS=1.137;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.571;QD=15.55;ReadPosRankSum=-0.411;SNPEFF_AMINO_ACID_CHANGE=N156S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44595025_44595868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372299    GT:AD:DP:GQ:PL    0/1:25,26:51:99:823,0,712
1    44595426    rs2429050    G    A    867.50    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=3.218;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.366;QD=16.68;ReadPosRankSum=-2.644;SNPEFF_AMINO_ACID_CHANGE=S161;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44595025_44595868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372299    GT:AD:DP:GQ:PL    0/1:21,31:52:99:897,0,480
1    44679556    rs803369    A    G    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315913    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,106
1    44684995    rs2799480    T    C    176.56    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=13;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=13.58;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372290    GT:AD:DP:GQ:PL    0/1:7,6:13:99:207,0,218
1    44773839    rs2301767    C    T    351.62    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=16.74;ReadPosRankSum=1.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457571    GT:AD:DP:GQ:PL    0/1:10,11:21:99:382,0,329
1    44788398    rs161721    A    T    957.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3039;MQ=59.25;MQ0=0;QD=30.88;SNPEFF_AMINO_ACID_CHANGE=M48K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_44788397_44788715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372259    GT:AD:DP:GQ:PL    1/1:0,29:31:72.24:990,72,0
1    44804480    rs11210984    G    A    330.23    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=20.64;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372253    GT:AD:DP:GQ:PL    0/1:6,10:16:99:360,0,185
1    44878509    rs11210991    C    G    395.99    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.218;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.14;MQ0=0;MQRankSum=-0.121;QD=14.67;ReadPosRankSum=1.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487332    GT:AD:DP:GQ:PL    0/1:14,13:27:99:426,0,485
1    44878549    rs11210992    T    C    331.48    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=2.518;QD=17.45;ReadPosRankSum=-0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487332    GT:AD:DP:GQ:PL    0/1:8,11:19:99:361,0,269
1    45080061    rs415707    C    T    346.72    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.655;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.218;QD=12.84;ReadPosRankSum=1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355387    GT:AD:DP:GQ:PL    0/1:14,13:27:99:377,0,377
1    45101478    rs2236219    T    C    81.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=10.24;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495630    GT:AD:DP:GQ:PL    0/1:4,4:8:99:112,0,134
1    45120072    rs116364606    G    A    39.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.64;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335497    GT:AD:DP:GQ:PL    0/1:2,4:6:69.84:70,0,70
1    45121045    rs11211020    T    C    108.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=27.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355387    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
1    45205323    rs11211030    A    G    74.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.62;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372218    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:107,9,0
1    45205598    rs3820586    T    C    3543.93    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=250;DS;Dels=0.0;FS=6.177;HRun=1;HaplotypeScore=4.7911;MQ=59.82;MQ0=0;MQRankSum=1.852;QD=14.18;ReadPosRankSum=1.912;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493027    GT:AD:DP:GQ:PL    0/1:126,124:250:99:3544,0,3870
1    45215905    rs67742332    T    G    32.99    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.868;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.33;MQ0=0;MQRankSum=0.467;QD=2.36;ReadPosRankSum=-1.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372217    GT:AD:DP:GQ:PL    0/1:11,3:14:62.98:63,0,365
1    45216038    rs12566610    C    G    1386.98    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.017;DB;DP=130;Dels=0.0;FS=4.461;HRun=0;HaplotypeScore=0.8941;MQ=59.5;MQ0=0;MQRankSum=1.363;QD=10.67;ReadPosRankSum=-0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372217    GT:AD:DP:GQ:PL    0/1:71,59:130:99:1417,0,2101
1    45218542    rs6688710    T    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    45218895    rs3795713    A    T    915.61    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.713;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.139;QD=17.61;ReadPosRankSum=0.343;SNPEFF_AMINO_ACID_CHANGE=R123;SNPEFF_CODON_CHANGE=cgA/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45218804_45218926;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372217    GT:AD:DP:GQ:PL    0/1:22,30:52:99:946,0,549
1    45221432    rs12732939    C    T    64.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.0;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480574    GT:AD:DP:GQ:PL    0/1:2,3:5:70.24:95,0,70
1    45224757    rs16832228    G    A    215.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452259    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
1    45224998    rs4342887    A    C    251.83    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=25;Dels=0.0;FS=3.624;HRun=0;HaplotypeScore=1.57;MQ=59.07;MQ0=0;MQRankSum=0.934;QD=10.07;ReadPosRankSum=-1.444;SNPEFF_AMINO_ACID_CHANGE=I336L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45224878_45225020;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372222    GT:AD:DP:GQ:PL    0/1:16,9:25:99:282,0,504
1    45226084    rs1140279    G    A    455.39    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=28;Dels=0.0;FS=1.576;HRun=0;HaplotypeScore=0.9469;MQ=59.17;MQ0=0;MQRankSum=-1.732;QD=16.26;ReadPosRankSum=0.659;SNPEFF_AMINO_ACID_CHANGE=A387;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45225952_45226156;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372222    GT:AD:DP:GQ:PL    0/1:13,15:28:99:485,0,366
1    45241113    rs11211031    T    C    1448.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=58.81;MQ0=0;QD=37.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497035    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1481,114,0
1    45241374    rs3806398    G    A    393.41    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=32;Dels=0.0;FS=3.142;HRun=0;HaplotypeScore=2.3391;MQ=58.55;MQ0=0;MQRankSum=-0.27;QD=12.29;ReadPosRankSum=-1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372209    GT:AD:DP:GQ:PL    0/1:17,14:32:99:423,0,544
1    45241857    rs116078889    C    T    104.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.11;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372209    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,141
1    45244051    rs3838955    T    TG    2621.96    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.978;DB;DP=132;FS=2.266;HRun=1;HaplotypeScore=317.5051;IndelType=I;MQ=60.4;MQ0=0;MQRankSum=-1.245;QD=19.86;ReadPosRankSum=-0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470475    GT:AD:DP:GQ:PL    0/1:63,69:132:99:2661,0,1904
1    45252015    rs41269079    T    A    367.04    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=1.664;QD=18.35;ReadPosRankSum=0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372207    GT:AD:DP:GQ:PL    0/1:7,13:20:99:397,0,223
1    45266832    rs17881698    A    G    272.48    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.61;MQ0=0;MQRankSum=0.95;QD=11.85;ReadPosRankSum=-0.619;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTEX1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339355    GT:AD:DP:GQ:PL    0/1:11,12:23:99:302,0,270
1    45268356    rs11584440    C    A    170.24    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=10.64;ReadPosRankSum=1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTEX1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339355    GT:AD:DP:GQ:PL    0/1:10,6:16:99:200,0,360
1    45268382    rs12404160    G    A    280.14    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.992;DB;DP=18;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=15.56;ReadPosRankSum=0.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTEX1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339355    GT:AD:DP:GQ:PL    0/1:7,11:18:99:310,0,216
1    45270024    rs11211036    G    C    579.52    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.399;DB;DP=65;Dels=0.0;FS=15.613;HRun=3;HaplotypeScore=1.6439;MQ=60.0;MQ0=0;MQRankSum=-0.051;QD=8.92;ReadPosRankSum=0.341;SNPEFF_AMINO_ACID_CHANGE=P427;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45270011_45270173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543983    GT:AD:DP:GQ:PL    0/1:37,28:65:99:610,0,852
1    45271097    rs17883049    G    A    1147.09    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.701;DB;DP=104;Dels=0.0;FS=1.968;HRun=0;HaplotypeScore=2.5309;MQ=59.78;MQ0=0;MQRankSum=-0.017;QD=11.03;ReadPosRankSum=-1.344;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461358    GT:AD:DP:GQ:PL    0/1:59,45:104:99:1177,0,1849
1    45271828    rs17885815    T    C    56.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.1;ReadPosRankSum=1.754;SNPEFF_AMINO_ACID_CHANGE=V171;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45271585_45272347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTEX1D4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339355    GT:AD:DP:GQ:PL    0/1:4,3:7:86.73:87,0,107
1    45288527    rs3795719    C    G    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,71
1    45291908    rs11211040    G    A    274.06    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.133;QD=13.7;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    0/1:9,11:20:99:304,0,246
1    45292173    rs11573590    G    A    256.35    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=13.49;ReadPosRankSum=1.429;SNPEFF_AMINO_ACID_CHANGE=T988M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45292160_45292440;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    0/1:9,10:19:99:286,0,258
1    45292866    rs2295996    G    A    867.68    PASS    AB=0.34;AC=1;AF=0.50;AN=2;BaseQRankSum=2.164;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.352;QD=17.35;ReadPosRankSum=-0.842;SNPEFF_AMINO_ACID_CHANGE=D829;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45292839_45292981;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    0/1:17,33:50:99:898,0,418
1    45293518    rs7525308    A    G    432.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=A685;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45293515_45293863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:465,36,0
1    45293752    rs2295997    T    C    621.95    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.12;DB;DP=38;Dels=0.0;FS=1.21;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.979;QD=16.37;ReadPosRankSum=-0.307;SNPEFF_AMINO_ACID_CHANGE=E607;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45293515_45293863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    0/1:18,20:38:99:652,0,521
1    45294156    rs2273940    T    C    574.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=26.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    1/1:0,22:22:48.15:608,48,0
1    45296752    rs2295998    C    T    65.92    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.59;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    0/1:7,3:10:95.91:96,0,196
1    45297753    rs2295999    A    G    693.69    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=69;Dels=0.0;FS=5.42;HRun=4;HaplotypeScore=0.9665;MQ=59.67;MQ0=0;MQRankSum=-0.565;QD=10.05;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    0/1:40,29:69:99:724,0,1398
1    45307506    rs3795720    G    A    2128.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372192    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2161,168,0
1    45340282    rs9988451    C    T    941.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360403    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:974,78,0
1    45340703    rs263955    T    C    85.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360403    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    45345446    rs3738248    T    A    215.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.792;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.201;QD=15.38;ReadPosRankSum=0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360403    GT:AD:DP:GQ:PL    0/1:7,7:14:99:245,0,232
1    45362992    rs263978    T    C    467.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360403    GT:AD:DP:GQ:PL    1/1:0,14:15:36.12:500,36,0
1    45443894    rs2487367    T    C    112.86    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=8.68;ReadPosRankSum=-1.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360403    GT:AD:DP:GQ:PL    0/1:7,6:13:99:143,0,225
1    45444038    rs11556200    G    A    1973.79    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=5.87;DB;DP=151;Dels=0.0;FS=3.207;HRun=0;HaplotypeScore=0.9998;MQ=59.72;MQ0=0;MQRankSum=-0.747;QD=13.07;ReadPosRankSum=-0.485;SNPEFF_AMINO_ACID_CHANGE=D81;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45443987_45444132;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360403    GT:AD:DP:GQ:PL    0/1:79,72:151:99:2004,0,2137
1    45446459    rs264022    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360403    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    45470130    rs7528534    T    C    1127.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484564    GT:AD:DP:GQ:PL    1/1:0,34:34:90.27:1160,90,0
1    45471362    rs12739545    G    A    180.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.803;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=9.01;ReadPosRankSum=1.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484564    GT:AD:DP:GQ:PL    0/1:12,8:20:99:210,0,390
1    45472798    rs71896015    TTGTG    T    780.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=236.3627;IndelType=D;MQ=50.43;MQ0=0;QD=25.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372168    GT:AD:DP:GQ:PL    1/1:11,13:31:70.11:822,70,0
1    45473316    rs4660830    C    T    32.43    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.63;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372168    GT:AD:DP:GQ:PL    0/1:5,2:7:62.42:62,0,146
1    45474008    rs7541207    T    C    462.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.631;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=16.52;ReadPosRankSum=1.355;SNPEFF_AMINO_ACID_CHANGE=L18;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45473912_45474223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372168    GT:AD:DP:GQ:PL    0/1:14,14:28:99:492,0,448
1    45474157    rs2298006    G    A    592.78    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=42;Dels=0.0;FS=4.504;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.189;QD=14.11;ReadPosRankSum=-0.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372172    GT:AD:DP:GQ:PL    0/1:20,22:42:99:623,0,622
1    45474750    rs2275599    A    T    99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=7.07;ReadPosRankSum=-0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372172    GT:AD:DP:GQ:PL    0/1:8,6:14:99:129,0,289
1    45474755    rs2275598    C    G    86.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DB;DP=16;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.247;QD=5.43;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372172    GT:AD:DP:GQ:PL    0/1:10,6:16:99:117,0,340
1    45475566    rs6429552    A    G    515.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.63;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372172    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:548,42,0
1    45475906    rs182666370    G    A    390.62    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.305;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.909;QD=10.02;ReadPosRankSum=0.39;SNPEFF_AMINO_ACID_CHANGE=A197V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45475873_45475965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372172    GT:AD:DP:GQ:PL    0/1:24,15:39:99:421,0,769
1    45476069    rs7533668    C    A    266.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372172    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:300,24,0
1    45476489    rs3806405    A    G    162.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=11.61;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372172    GT:AD:DP:GQ:PL    0/1:7,7:14:99:193,0,243
1    45476663    rs2298005    G    A    258.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.854;QD=14.38;ReadPosRankSum=-0.883;SNPEFF_AMINO_ACID_CHANGE=L89;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45476561_45477001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372172    GT:AD:DP:GQ:PL    0/1:9,9:18:99:289,0,245
1    45477763    rs151098284    G    A    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359600    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,110
1    45479772    rs11211066    G    T    344.60    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.997;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.402;QD=10.14;ReadPosRankSum=0.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460334    GT:AD:DP:GQ:PL    0/1:20,14:34:99:375,0,687
1    45479874    rs6698485    G    T    431.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460334    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:464,36,0
1    45480733    rs6429553    C    T    931.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434478    GT:AD:DP:GQ:PL    1/1:0,24:24:72.21:964,72,0
1    45486272    rs998418    T    C    2820.25    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=212;Dels=0.0;FS=3.338;HRun=0;HaplotypeScore=3.2126;MQ=59.89;MQ0=0;MQRankSum=-0.103;QD=13.3;ReadPosRankSum=1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359600    GT:AD:DP:GQ:PL    0/1:116,96:212:99:2850,0,3579
1    45499806    rs10749855    A    G    200.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359600    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
1    45500083    rs145298923    C    T    1039.99    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.649;DB;DP=92;Dels=0.0;FS=5.458;HRun=0;HaplotypeScore=0.7887;MQ=59.8;MQ0=0;MQRankSum=-0.935;QD=11.3;ReadPosRankSum=-1.023;SNPEFF_AMINO_ACID_CHANGE=V784M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45499984_45500141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359600    GT:AD:DP:GQ:PL    0/1:50,42:92:99:1070,0,1503
1    45500294    rs6671633    A    G    73.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.2;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359600    GT:AD:DP:GQ:PL    0/1:4,4:8:99:104,0,131
1    45504524    rs7543818    T    A    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.93;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359600    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:70,0,65
1    45504720    rs7551698    G    C    471.51    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.381;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;MQRankSum=-0.69;QD=12.09;ReadPosRankSum=-2.127;SNPEFF_AMINO_ACID_CHANGE=T594;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45504608_45504745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359600    GT:AD:DP:GQ:PL    0/1:21,18:39:99:502,0,621
1    45524213    rs3738246    C    T    599.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359600    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:633,48,0
1    45796269    rs3219493    G    C    211.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPDL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334815    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
1    45798555    rs3219487    T    C    1875.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPDL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334815    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1908,150,0
1    45799988    rs149074041    C    T    810.91    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.938;DB;DP=80;Dels=0.0;FS=2.21;HRun=0;HaplotypeScore=0.9159;MQ=59.71;MQ0=0;MQRankSum=0.2;QD=10.14;ReadPosRankSum=2.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUTYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354383    GT:AD:DP:GQ:PL    0/1:52,28:80:99:841,0,1507
1    45805566    rs3219468    G    C    180.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TESK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341771    GT:AD:DP:GQ:PL    1/1:0,10:10:15.05:213,15,0
1    45806053    rs3219466    G    A    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TESK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341771    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:70,0,70
1    45962273    .    C    T    276.72    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DP=17;Dels=0.0;FS=1.913;HRun=3;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.317;QD=16.28;ReadPosRankSum=-1.122;SNPEFF_AMINO_ACID_CHANGE=L95;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45962228_45962295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC163P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432082    GT:AD:DP:GQ:PL    0/1:7,10:17:99:307,0,162
1    45973928    rs2275276    G    A    1116.55    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.576;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.463;QD=15.51;ReadPosRankSum=-2.164;SNPEFF_AMINO_ACID_CHANGE=V107;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_45973884_45974036;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMACHC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401061    GT:AD:DP:GQ:PL    0/1:30,42:72:99:1147,0,833
1    45980862    rs2356561    T    G    117.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.65;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMACHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401061    GT:AD:DP:GQ:PL    0/1:2,4:6:63.82:148,0,64
1    45981258    rs7516006    A    G    241.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.986;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=42.38;MQ0=0;MQRankSum=-2.003;QD=12.07;ReadPosRankSum=-1.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMACHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401061    GT:AD:DP:GQ:PL    0/1:10,10:20:99:271,0,309
1    45981512    rs2356559    T    C    586.36    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.01;DB;DP=51;Dels=0.0;FS=2.524;HRun=0;HaplotypeScore=0.9999;MQ=57.23;MQ0=0;MQRankSum=1.897;QD=11.5;ReadPosRankSum=-0.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMACHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401061    GT:AD:DP:GQ:PL    0/1:24,27:51:99:616,0,710
1    46027355    rs512083    T    C    162.26    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=13.52;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351829    GT:AD:DP:GQ:PL    0/1:5,7:12:99:192,0,152
1    46035760    rs3014216    A    T    35.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.9;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351829    GT:AD:DP:GQ:PL    0/1:4,2:6:65.40:65,0,142
1    46057144    rs2991981    A    G    83.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NASP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341288    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    46073489    rs2230657    G    A    567.63    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.081;DB;DP=49;Dels=0.0;FS=1.331;HRun=1;HaplotypeScore=0.5784;MQ=58.58;MQ0=0;MQRankSum=-1.99;QD=11.58;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=P202;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46072993_46074009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NASP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341288    GT:AD:DP:GQ:PL    0/1:25,24:49:99:598,0,519
1    46078854    rs2230658    A    G    840.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=S114;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46078841_46078920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NASP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372052    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:873,69,0
1    46078884    rs2230659    C    T    1090.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_AMINO_ACID_CHANGE=T124;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46078841_46078920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NASP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372052    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1123,81,0
1    46080947    rs1972410    A    C    1724.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343901    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1758,138,0
1    46081940    rs2356581    T    A    299.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343901    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:332,27,0
1    46081960    rs2253862    C    T    714.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343901    GT:AD:DP:GQ:PL    1/1:0,21:21:63.15:748,63,0
1    46082431    rs2991988    C    A    634.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343901    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:667,54,0
1    46082965    rs2991989    C    T    137.70    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=22.95;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343901    GT:AD:DP:GQ:PL    0/1:1,5:6:20.52:168,0,21
1    46085852    rs2275085    C    T    248.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445048    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
1    46085879    rs2275086    C    G    452.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445048    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:486,36,0
1    46086077    rs3014246    C    T    1100.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.347;QD=31.44;ReadPosRankSum=1.535;SNPEFF_AMINO_ACID_CHANGE=S548N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46085717_46086105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343901    GT:AD:DP:GQ:PL    1/1:1,34:35:62.60:1133,63,0
1    46086329    rs11590549    C    T    181.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=15.11;ReadPosRankSum=-0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464739    GT:AD:DP:GQ:PL    0/1:6,6:12:99:211,0,211
1    46086913    rs3014245    C    T    591.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525599    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:625,48,0
1    46087577    rs3014242    G    A    468.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=P321L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46087549_46087667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343901    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:502,36,0
1    46087879    rs3014241    A    G    477.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525599    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:510,39,0
1    46089225    rs3014240    C    G    152.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290795    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:185,15,0
1    46095989    rs11585275    T    C    80.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=16.13;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290795    GT:AD:DP:GQ:PL    0/1:2,3:5:64.91:111,0,65
1    46124663    rs6671802    A    G    725.31    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=52;Dels=0.0;FS=4.746;HRun=0;HaplotypeScore=0.8667;MQ=59.56;MQ0=0;MQRankSum=-0.745;QD=13.95;ReadPosRankSum=0.594;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460859    GT:AD:DP:GQ:PL    0/1:25,27:52:99:755,0,689
1    46206399    rs28647556    G    A    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359942    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    46290311    rs10561161    GTA    G    738.86    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=4.212;DB;DP=44;FS=3.358;HRun=0;HaplotypeScore=146.7994;IndelType=D;MQ=59.15;MQ0=1;MQRankSum=0.578;QD=16.42;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361297    GT:AD:DP:GQ:PL    0/1:24,21:44:99:778,0,860
1    46347878    .    AT    A    116.51    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=1;HaplotypeScore=48.959;IndelType=D;MQ=63.94;MQ0=0;QD=23.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361297    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:158,15,0
1    46347910    rs6665193    G    A    34.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.84;MQ0=0;MQRankSum=0.72;QD=4.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361297    GT:AD:DP:GQ:PL    0/1:4,2:7:64.40:64,0,135
1    46382852    rs6687301    T    C    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.53;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361297    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,151
1    46424964    rs4460582    G    A    511.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361297    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:544,42,0
1    46472153    rs6429592    G    A    293.35    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.619;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.784;QD=15.44;ReadPosRankSum=0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361297    GT:AD:DP:GQ:PL    0/1:8,11:19:99:323,0,281
1    46473902    rs3922886    A    T    164.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.46;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488619    GT:AD:DP:GQ:PL    0/1:4,6:10:99:195,0,132
1    46476587    rs11211247    T    G    497.07    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.722;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.686;QD=13.43;ReadPosRankSum=-0.472;SNPEFF_AMINO_ACID_CHANGE=D273E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46476402_46476611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372008    GT:AD:DP:GQ:PL    0/1:20,17:37:99:527,0,638
1    46487560    rs946524    A    G    1785.40    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.539;DB;DP=177;Dels=0.0;FS=0.623;HRun=0;HaplotypeScore=0.8321;MQ=59.61;MQ0=0;MQRankSum=1.063;QD=10.09;ReadPosRankSum=-0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361297    GT:AD:DP:GQ:PL    0/1:96,81:177:99:1815,0,2792
1    46491635    rs785478    C    T    95.05    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.361;QD=10.56;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467367    GT:AD:DP:GQ:PL    0/1:4,5:9:99:125,0,126
1    46495024    rs3795318    G    A    62.33    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467367    GT:AD:DP:GQ:PL    0/1:5,3:8:92.33:92,0,135
1    46496709    rs925524    A    G    389.90    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.29;DB;DP=28;Dels=0.0;FS=3.372;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.737;QD=13.93;ReadPosRankSum=-0.23;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000498364    GT:AD:DP:GQ:PL    0/1:13,15:28:99:420,0,402
1    46498375    rs1622208    A    G    260.03    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.222;DB;DP=27;Dels=0.0;FS=5.787;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.469;QD=9.63;ReadPosRankSum=0.469;SNPEFF_AMINO_ACID_CHANGE=V1081;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46498268_46498390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372009    GT:AD:DP:GQ:PL    0/1:16,11:27:99:290,0,558
1    46500613    rs17855317    T    C    980.02    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.441;DB;DP=83;Dels=0.0;FS=2.066;HRun=1;HaplotypeScore=0.9789;MQ=58.88;MQ0=0;MQRankSum=-0.662;QD=11.81;ReadPosRankSum=-1.766;SNPEFF_AMINO_ACID_CHANGE=T1234;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46500501_46501738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAST2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372009    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1010,0,1346
1    46511487    rs2297883    G    C    360.15    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.923;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.231;QD=16.37;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262741    GT:AD:DP:GQ:PL    0/1:10,12:22:99:390,0,278
1    46521517    rs785468    G    A    1377.26    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.978;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=59.77;MQ0=0;MQRankSum=1.039;QD=13.91;ReadPosRankSum=-0.815;SNPEFF_AMINO_ACID_CHANGE=S297;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46521467_46521643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262741    GT:AD:DP:GQ:PL    0/1:50,49:99:99:1407,0,1405
1    46521559    rs785467    A    T    1273.56    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=1.478;DB;DP=87;Dels=0.0;FS=0.849;HRun=2;HaplotypeScore=0.8321;MQ=59.74;MQ0=0;MQRankSum=0.441;QD=14.64;ReadPosRankSum=1.207;SNPEFF_AMINO_ACID_CHANGE=N283K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46521467_46521643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262741    GT:AD:DP:GQ:PL    0/1:38,49:87:99:1304,0,1102
1    46532657    .    G    T    1168.81    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.754;DP=86;Dels=0.0;FS=7.314;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.61;QD=13.59;ReadPosRankSum=-0.639;SNPEFF_AMINO_ACID_CHANGE=H105N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46532583_46532763;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340332    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1199,0,1450
1    46597288    .    A    C    156.04    MQFilter40    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.612;DP=28;Dels=0.0;FS=5.315;HRun=5;HaplotypeScore=12.885;MQ=39.12;MQ0=0;MQRankSum=-2.476;QD=5.57;ReadPosRankSum=1.777;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262741    GT:AD:DP:GQ:PL    0/1:10,18:28:99:186,0,148
1    46597294    .    A    C    189.01    HaplotypeScoreFilter13    AB=0.276;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.608;DP=29;Dels=0.0;FS=4.337;HRun=5;HaplotypeScore=18.0431;MQ=41.2;MQ0=0;MQRankSum=-3.525;QD=6.52;ReadPosRankSum=2.679;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262741    GT:AD:DP:GQ:PL    0/1:8,21:29:99:219,0,220
1    46650191    rs67969395    C    CG    576.97    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.028;DB;DP=68;FS=1.441;HRun=9;HaplotypeScore=205.5802;IndelType=I;MQ=58.61;MQ0=0;MQRankSum=-0.108;QD=8.48;ReadPosRankSum=1.316;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371984    GT:AD:DP:GQ:PL    0/1:41,26:68:99:616,0,634
1    46655158    rs6659553    T    C    450.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_AMINO_ACID_CHANGE=M601V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46655130_46655239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535522    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:483,36,0
1    46655873    rs12116820    C    T    130.60    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=48.63;MQ0=0;MQRankSum=-0.922;QD=18.66;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463030    GT:AD:DP:GQ:PL    0/1:2,5:7:53.61:161,0,54
1    46657651    rs7521880    T    C    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477114    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
1    46658328    rs2292484    A    G    49.76    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=3.233;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=4.52;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477114    GT:AD:DP:GQ:PL    0/1:7,4:11:79.75:80,0,249
1    46658343    rs2292485    G    A    180.21    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=21;Dels=0.0;FS=5.898;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.616;QD=8.58;ReadPosRankSum=0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477114    GT:AD:DP:GQ:PL    0/1:13,8:21:99:210,0,451
1    46659104    rs7527668    T    C    33.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=4.26;HRun=3;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-0.684;QD=3.67;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489985    GT:AD:DP:GQ:PL    0/1:5,4:9:63.02:63,0,172
1    46659363    rs7527935    T    C    253.46    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=15.84;ReadPosRankSum=0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489985    GT:AD:DP:GQ:PL    0/1:7,9:16:99:283,0,244
1    46660295    rs2292487    T    C    905.15    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.007;DB;DP=65;Dels=0.0;FS=0.985;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.427;QD=13.93;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=N188S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46660225_46660323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMGNT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396420    GT:AD:DP:GQ:PL    0/1:31,34:65:99:935,0,967
1    46806429    rs41293275    A    T    86.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474062    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    46806480    rs17361749    C    T    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307089    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
1    46806550    rs41293277    C    T    75.73    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.15;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=L18F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46805849_46806591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000474844    GT:AD:DP:GQ:PL    0/1:1,4:5:27.28:106,0,27
1    46807416    rs68083747    T    G    300.20    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.879;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;MQRankSum=-0.495;QD=13.65;ReadPosRankSum=1.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:10,12:22:99:330,0,289
1    46807445    rs66972124    A    G    351.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.415;DB;DP=28;Dels=0.0;FS=6.368;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.049;QD=12.57;ReadPosRankSum=-1.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:12,16:28:99:382,0,418
1    46807597    rs10489770    G    A    1187.83    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.989;DB;DP=72;Dels=0.0;FS=6.68;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;MQRankSum=1.286;QD=16.5;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1218,0,1032
1    46807697    rs17357621    C    T    1066.49    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=87;Dels=0.0;FS=1.812;HRun=0;HaplotypeScore=0.9665;MQ=59.74;MQ0=0;MQRankSum=0.26;QD=12.26;ReadPosRankSum=2.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:45,42:87:99:1096,0,1292
1    46808180    .    C    T    734.27    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.798;DP=44;Dels=0.0;FS=4.325;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.088;QD=16.69;ReadPosRankSum=-1.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:19,24:44:99:764,0,661
1    46808224    rs56909107    A    C    674.12    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DB;DP=44;Dels=0.0;FS=2.623;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.134;QD=15.32;ReadPosRankSum=-0.522;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:21,23:44:99:704,0,624
1    46808426    rs41293285    C    T    682.21    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.516;QD=20.67;ReadPosRankSum=-0.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:9,24:33:99:712,0,217
1    46808462    rs17357628    A    G    668.31    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.381;DB;DP=49;Dels=0.0;FS=4.667;HRun=0;HaplotypeScore=0.9469;MQ=59.53;MQ0=0;MQRankSum=0.164;QD=13.64;ReadPosRankSum=0.777;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:20,29:49:99:698,0,529
1    46808668    rs17357635    G    A    921.07    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9946;MQ=59.5;MQ0=0;MQRankSum=-1.261;QD=12.28;ReadPosRankSum=-0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:42,33:75:99:951,0,1307
1    46808695    rs68191463    T    C    886.28    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=67;Dels=0.0;FS=3.391;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=0.912;QD=13.23;ReadPosRankSum=0.514;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:36,31:67:99:916,0,1170
1    46808852    rs41293287    C    T    433.76    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DB;DP=36;Dels=0.0;FS=5.391;HRun=2;HaplotypeScore=1.9658;MQ=58.83;MQ0=0;MQRankSum=0.773;QD=12.05;ReadPosRankSum=0.019;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:17,19:36:99:464,0,441
1    46808860    rs56126529    C    T    494.83    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=42;Dels=0.0;FS=8.07;HRun=0;HaplotypeScore=0.9993;MQ=59.45;MQ0=0;MQRankSum=0.323;QD=11.78;ReadPosRankSum=0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:22,20:42:99:525,0,664
1    46809025    rs7525309    G    T    1410.31    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=114;Dels=0.0;FS=1.592;HRun=0;HaplotypeScore=0.8321;MQ=59.23;MQ0=0;MQRankSum=-0.429;QD=12.37;ReadPosRankSum=-0.486;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:60,53:114:99:1440,0,1787
1    46809321    rs7548675    C    G    811.18    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DB;DP=46;Dels=0.0;FS=1.159;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=17.63;ReadPosRankSum=-0.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:20,26:46:99:841,0,578
1    46809419    rs7515284    A    G    224.72    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.484;DB;DP=24;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.484;QD=9.36;ReadPosRankSum=1.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:15,9:24:99:255,0,516
1    46810405    rs142663838    TG    T    309.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.816;DB;DP=20;FS=0.0;HRun=5;HaplotypeScore=55.6551;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=15.46;ReadPosRankSum=-0.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:8,12:20:99:348,0,268
1    46810670    rs17361763    T    C    742.47    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.774;DB;DP=52;Dels=0.0;FS=2.507;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.479;QD=14.28;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=D48;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46810473_46810816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536062    GT:AD:DP:GQ:PL    0/1:23,29:52:99:772,0,723
1    46810842    rs6684274    C    T    214.50    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.586;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=12.62;ReadPosRankSum=1.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472157    GT:AD:DP:GQ:PL    0/1:10,7:17:99:244,0,264
1    46812360    rs112089006    C    T    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.14;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475281    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:67,0,68
1    46812374    rs72677585    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475281    GT:AD:DP:GQ:PL    0/1:2,2:4:55.93:72,0,56
1    46812444    rs17357676    A    G    76.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=15.34;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475281    GT:AD:DP:GQ:PL    0/1:2,3:5:54.86:107,0,55
1    46812519    rs17361791    A    G    221.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.27;QD=11.08;ReadPosRankSum=0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475281    GT:AD:DP:GQ:PL    0/1:12,8:20:99:252,0,416
1    46812852    rs41294460    G    A    70.80    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=14.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475281    GT:AD:DP:GQ:PL    0/1:1,4:5:30.20:101,0,30
1    46818374    rs41294476    C    A    171.43    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.05;MQ0=0;MQRankSum=-1.134;QD=14.29;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474844    GT:AD:DP:GQ:PL    0/1:5,7:12:99:201,0,170
1    46818416    rs17413694    A    C    264.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.182;QD=12.03;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474844    GT:AD:DP:GQ:PL    0/1:11,11:22:99:295,0,401
1    46818417    rs77185326    T    C    247.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.707;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.854;QD=11.26;ReadPosRankSum=-0.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474844    GT:AD:DP:GQ:PL    0/1:11,11:22:99:278,0,379
1    46818442    rs41294478    G    A    440.70    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.167;QD=14.69;ReadPosRankSum=-1.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474844    GT:AD:DP:GQ:PL    0/1:13,17:30:99:471,0,406
1    46818452    rs17413701    A    G    390.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.986;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=56.85;MQ0=0;MQRankSum=-0.664;QD=13.03;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474844    GT:AD:DP:GQ:PL    0/1:15,15:30:99:421,0,513
1    46818479    rs7515598    C    T    621.91    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=48;Dels=0.0;FS=1.201;HRun=0;HaplotypeScore=0.0;MQ=57.56;MQ0=0;MQRankSum=-1.355;QD=12.96;ReadPosRankSum=0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474844    GT:AD:DP:GQ:PL    0/1:22,26:48:99:652,0,666
1    46818508    rs7529674    T    C    1000.63    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=4.067;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.95;MQ0=0;MQRankSum=-0.887;QD=17.55;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474844    GT:AD:DP:GQ:PL    0/1:27,30:57:99:1031,0,737
1    46826587    rs55887761    C    A    146.90    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.823;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=7.35;ReadPosRankSum=-1.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486270    GT:AD:DP:GQ:PL    0/1:11,9:20:99:177,0,386
1    46827214    rs324414    A    C    1341.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=35.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486270    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1375,102,0
1    46827485    rs1053624    C    T    534.87    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.604;DB;DP=39;Dels=0.0;FS=4.664;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-1.503;QD=13.71;ReadPosRankSum=-1.307;SNPEFF_AMINO_ACID_CHANGE=P325;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46827242_46827666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536062    GT:AD:DP:GQ:PL    0/1:19,20:39:99:565,0,568
1    46870761    rs324420    C    A    726.43    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=15.46;ReadPosRankSum=0.734;SNPEFF_AMINO_ACID_CHANGE=P129T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46870686_46870820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAAH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243167    GT:AD:DP:GQ:PL    0/1:23,24:47:99:756,0,679
1    46871986    rs324419    T    C    1408.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=30.61;SNPEFF_AMINO_ACID_CHANGE=C299;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46871916_46872040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAAH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243167    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1441,117,0
1    46874383    rs2295633    A    G    90.04    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=57.84;MQ0=0;MQRankSum=-0.536;QD=6.93;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468718    GT:AD:DP:GQ:PL    0/1:8,5:13:99:120,0,273
1    46877180    rs6662982    G    A    74.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.73;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396325    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:105,0,29
1    46976837    rs1886116    C    T    941.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.39;SNPEFF_AMINO_ACID_CHANGE=P188;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46976607_46976955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMBX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360032    GT:AD:DP:GQ:PL    1/1:0,30:30:72.24:975,72,0
1    46977886    rs114486361    G    C    306.53    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.297;DB;DP=31;Dels=0.0;FS=1.447;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.042;QD=9.89;ReadPosRankSum=1.339;SNPEFF_AMINO_ACID_CHANGE=G285A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_46977715_46979898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMBX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360032    GT:AD:DP:GQ:PL    0/1:17,14:31:99:337,0,607
1    47006026    rs141775788    TGCGTGTGCGCGTGCGC    T    747.16    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=3.279;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=453.2885;IndelType=D;MQ=45.36;MQ0=0;MQRankSum=-0.81;QD=27.67;ReadPosRankSum=1.582;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL136373.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401325    GT:AD:DP:GQ:PL    0/1:19,8:27:99:786,0,440
1    47013180    rs10890404    A    G    135.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KNCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294445    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:168,12,0
1    47013364    rs1258041    T    C    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KNCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294445    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
1    47014821    .    A    AAAAAG    1148.55    PASS    AC=2;AF=1.00;AN=2;DP=16;FS=0.0;HRun=0;HaplotypeScore=55.8923;IndelType=I;MQ=49.45;MQ0=0;QD=71.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KNCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396314    GT:AD:DP:GQ:PL    1/1:0,14:16:48.16:1191,48,0
1    47059934    rs1258021    T    C    338.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.22;SNPEFF_AMINO_ACID_CHANGE=Q32R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47059785_47059952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MKNK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532110    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:372,33,0
1    47108828    rs736188    T    C    375.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329231    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:408,30,0
1    47109089    rs1745377    A    G    153.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329231    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
1    47110668    rs1258054    G    C    243.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329231    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:276,24,0
1    47110712    rs1258053    C    T    391.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329231    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:424,33,0
1    47110766    rs5773919    G    GC    800.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=55.3779;IndelType=I;MQ=60.57;MQ0=0;QD=42.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329231    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:843,57,0
1    47138444    rs616249    C    T    340.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0494;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371933    GT:AD:DP:GQ:PL    1/1:0,12:12:30.06:373,30,0
1    47153855    rs11211340    T    A    359.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0494;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371933    GT:AD:DP:GQ:PL    1/1:0,11:11:33.07:393,33,0
1    47264626    .    T    C    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546128    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:66,0,32
1    47276728    rs2297812    G    C    480.63    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.87;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.172;QD=12.99;ReadPosRankSum=-0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546128    GT:AD:DP:GQ:PL    0/1:17,20:37:99:511,0,530
1    47279789    rs2297811    C    T    648.16    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=44;Dels=0.0;FS=3.85;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=1.519;QD=14.73;ReadPosRankSum=0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526297    GT:AD:DP:GQ:PL    0/1:21,23:44:99:678,0,683
1    47280746    rs59248357    GAT    G    647.83    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=4.202;DB;DP=33;FS=3.393;HRun=0;HaplotypeScore=110.8765;IndelType=D;MQ=60.65;MQ0=0;MQRankSum=-2.431;QD=19.63;ReadPosRankSum=0.961;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_47280746_47280936;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4B1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000271153    GT:AD:DP:GQ:PL    0/1:16,17:33:99:687,0,887
1    47280859    rs2297810    G    A    401.26    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.807;DB;DP=29;Dels=0.0;FS=3.696;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.153;QD=13.84;ReadPosRankSum=-0.764;SNPEFF_AMINO_ACID_CHANGE=M168I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47280746_47280936;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000468637    GT:AD:DP:GQ:PL    0/1:14,15:29:99:431,0,492
1    47280884    rs4646491    C    T    345.52    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=30;Dels=0.0;FS=6.262;HRun=1;HaplotypeScore=0.9665;MQ=59.07;MQ0=0;MQRankSum=-0.391;QD=11.52;ReadPosRankSum=1.493;SNPEFF_AMINO_ACID_CHANGE=R177C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47280746_47280936;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000468637    GT:AD:DP:GQ:PL    0/1:14,16:30:99:376,0,409
1    47282772    rs2297809    C    T    651.63    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.792;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.482;QD=11.04;ReadPosRankSum=1.808;SNPEFF_AMINO_ACID_CHANGE=R212C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47282720_47282853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000468637    GT:AD:DP:GQ:PL    0/1:35,24:59:99:682,0,979
1    47282888    rs35333582    C    T    348.53    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.318;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.464;QD=12.45;ReadPosRankSum=-0.464;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468637    GT:AD:DP:GQ:PL    0/1:15,13:28:99:379,0,498
1    47351052    rs5003005    A    T    261.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.31;MQ0=14;QD=9.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4Z2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423332    GT:AD:DP:GQ:PL    1/1:0,27:28:32.96:295,33,0
1    47395973    rs1126743    G    A    1563.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_AMINO_ACID_CHANGE=I458;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47394849_47395982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4A11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310638    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1597,117,0
1    47398743    rs3890011    G    C    6825.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DB;DP=205;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7676;MQ=59.12;MQ0=2;MQRankSum=2.425;QD=33.13;ReadPosRankSum=1.845;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457840    GT:AD:DP:GQ:PL    1/1:4,201:205:99:6825,464,0
1    47399415    rs28438640    C    A    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457840    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    47400059    rs71500102    A    G    594.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.58;MQ0=4;QD=21.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310638    GT:AD:DP:GQ:PL    1/1:0,28:28:57.15:627,57,0
1    47401424    rs2269231    A    T    738.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.97;MQ0=1;QD=30.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310638    GT:AD:DP:GQ:PL    1/1:0,24:24:66.14:771,66,0
1    47401466    rs2269232    T    C    467.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.42;MQ0=0;QD=25.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310638    GT:AD:DP:GQ:PL    1/1:0,18:18:45.10:500,45,0
1    47402487    rs67515839    TTGTG    T    371.38    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=1.393;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=130.0906;IndelType=D;MQ=59.41;MQ0=0;MQRankSum=1.393;QD=16.15;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310638    GT:AD:DP:GQ:PL    0/1:14,9:23:1.27:409,0,1
1    47495822    rs12141009    C    T    1347.02    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=0.508;DB;DP=80;Dels=0.0;FS=6.388;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.466;QD=16.84;ReadPosRankSum=-0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4X1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371901    GT:AD:DP:GQ:PL    0/1:33,47:80:99:1377,0,1004
1    47496983    rs12041262    C    A    620.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.167;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3769;MQ=60.0;MQ0=0;MQRankSum=-0.672;QD=14.11;ReadPosRankSum=0.672;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4X1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371901    GT:AD:DP:GQ:PL    0/1:24,20:44:99:651,0,856
1    47514024    rs10890447    A    G    210.16    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=15.01;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4X1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371901    GT:AD:DP:GQ:PL    0/1:5,9:14:99:240,0,176
1    47515563    rs11448645    G    GA    286.66    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=26;FS=0.0;HRun=5;HaplotypeScore=90.884;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.085;QD=11.03;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4X1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371901    GT:AD:DP:GQ:PL    0/1:16,10:26:99:326,0,350
1    47515596    rs1393659    A    C    736.97    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=3.002;DB;DP=53;Dels=0.0;FS=1.728;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.347;QD=13.91;ReadPosRankSum=-1.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4X1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371901    GT:AD:DP:GQ:PL    0/1:28,25:53:99:767,0,917
1    47534107    rs2055500    A    T    115.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.26;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:2,4:6:63.49:146,0,63
1    47548189    rs116734532    A    G    303.09    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.155;DB;DP=104;Dels=0.0;FS=1.222;HRun=0;HaplotypeScore=0.0;MQ=48.71;MQ0=7;MQRankSum=-6.617;QD=2.91;ReadPosRankSum=2.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:73,31:104:99:333,0,2484
1    47550246    .    G    GA    116.91    PASS    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.79;DP=34;FS=9.956;HRun=3;HaplotypeScore=90.844;IndelType=I;MQ=47.14;MQ0=2;MQRankSum=-0.99;QD=3.25;ReadPosRankSum=0.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:29,7:34:99:156,0,840
1    47560039    rs12564635    G    T    97.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=45.15;MQ0=0;MQRankSum=-0.365;QD=9.78;ReadPosRankSum=2.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:6,4:10:99:128,0,201
1    47571902    rs4926802    C    T    377.02    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.013;DB;DP=49;Dels=0.0;FS=1.423;HRun=1;HaplotypeScore=6.999;MQ=51.16;MQ0=0;MQRankSum=-3.482;QD=7.69;ReadPosRankSum=-1.578;SNPEFF_AMINO_ACID_CHANGE=I390;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47571800_47571933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:25,23:49:99:407,0,568
1    47571905    rs28463559    C    T    370.67    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.238;DB;DP=51;Dels=0.0;FS=1.411;HRun=3;HaplotypeScore=6.999;MQ=51.01;MQ0=0;MQRankSum=-2.918;QD=7.27;ReadPosRankSum=-1.669;SNPEFF_AMINO_ACID_CHANGE=T391;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47571800_47571933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:27,24:51:99:401,0,713
1    47571943    rs5773936    CTTT    C    372.68    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.732;DB;DP=43;FS=13.074;HRun=16;HaplotypeScore=423.3243;IndelType=D;MQ=49.69;MQ0=0;MQRankSum=-1.838;QD=8.28;ReadPosRankSum=1.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:23,18:43:99:412,0,757
1    47571996    rs4926804    T    C    285.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.26;MQ0=0;MQRankSum=-1.599;QD=13.57;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:9,12:21:99:315,0,247
1    47572046    rs4926805    C    T    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=57.28;MQ0=0;MQRankSum=0.406;QD=10.46;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:3,3:7:99:103,0,105
1    47581122    rs7547893    A    T    145.53    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=9.1;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:9,7:16:99:176,0,309
1    47582292    rs10890465    T    G    85.93    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.214;DB;DP=26;Dels=0.0;FS=2.793;HRun=0;HaplotypeScore=1.2434;MQ=55.77;MQ0=0;MQRankSum=-0.827;QD=3.3;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:17,8:26:99:116,0,503
1    47583284    rs6664392    G    A    108.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.62;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,143
1    47583321    rs66687879    G    GA    217.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=45.9838;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=14.51;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:6,9:15:88.18:257,0,88
1    47583415    rs6664496    G    T    582.55    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.617;DB;DP=42;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9789;MQ=59.0;MQ0=0;MQRankSum=-1.121;QD=13.87;ReadPosRankSum=0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334194    GT:AD:DP:GQ:PL    0/1:22,20:42:99:613,0,721
1    47603010    rs117405989    C    T    178.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=22.26;ReadPosRankSum=-1.067;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:2,6:8:61.94:208,0,62
1    47603033    rs67939098    GT    G    344.58    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.807;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=59.2902;IndelType=D;MQ=60.72;MQ0=0;MQRankSum=-0.718;QD=22.97;ReadPosRankSum=-0.457;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:4,11:15:99:384,0,135
1    47607281    rs12564525    C    T    728.58    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=3.515;DB;DP=60;Dels=0.0;FS=7.398;HRun=0;HaplotypeScore=0.0;MQ=57.42;MQ0=1;MQRankSum=-0.171;QD=12.14;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=R126W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47607243_47607287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:31,29:60:99:759,0,740
1    47607405    rs117435390    G    A    122.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=13.58;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:4,5:9:99:152,0,137
1    47607452    rs116909100    G    T    33.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.38;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:2,2:4:58.64:64,0,59
1    47607851    rs2056899    A    T    552.73    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=51;Dels=0.0;FS=1.093;HRun=0;HaplotypeScore=1.7791;MQ=54.49;MQ0=0;MQRankSum=-0.83;QD=10.84;ReadPosRankSum=-0.35;SNPEFF_AMINO_ACID_CHANGE=N152Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47607780_47607907;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:26,25:51:99:583,0,750
1    47609489    rs10789501    T    C    866.77    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.319;DB;DP=65;Dels=0.0;FS=0.938;HRun=1;HaplotypeScore=0.9867;MQ=58.55;MQ0=0;MQRankSum=-1.529;QD=13.33;ReadPosRankSum=-0.098;SNPEFF_AMINO_ACID_CHANGE=C231R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47609434_47609588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:32,33:65:99:897,0,1011
1    47609668    rs911909    T    C    270.63    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=14.24;ReadPosRankSum=-2.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:8,11:19:99:301,0,233
1    47610436    rs147000658    G    A    77.73    MQFilter40    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.03;MQ0=3;MQRankSum=-0.133;QD=4.57;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:11,6:17:99:108,0,290
1    47611598    rs2405599    T    C    2431.97    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.262;DB;DP=203;DS;Dels=0.0;FS=13.605;HRun=2;HaplotypeScore=5.5929;MQ=55.16;MQ0=0;MQRankSum=-4.033;QD=11.98;ReadPosRankSum=-0.137;SNPEFF_AMINO_ACID_CHANGE=L330P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47611538_47611602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371890    GT:AD:DP:GQ:PL    0/1:117,85:203:99:2462,0,3806
1    47611940    rs911905    A    G    709.54    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.657;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=52.07;MQ0=3;MQRankSum=-4.514;QD=9.21;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371890    GT:AD:DP:GQ:PL    0/1:43,34:77:99:740,0,1422
1    47614185    rs760440    G    C    236.82    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=-1.208;QD=13.93;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP4A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294337    GT:AD:DP:GQ:PL    0/1:9,8:17:99:267,0,269
1    47685455    rs927462    T    C    623.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.0;SNPEFF_AMINO_ACID_CHANGE=K311;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47681964_47685846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294339    GT:AD:DP:GQ:PL    1/1:0,23:24:54.14:657,54,0
1    47689842    rs34087210    C    G    172.12    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.644;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.992;MQ=58.78;MQ0=0;MQRankSum=0.044;QD=9.06;ReadPosRankSum=-0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465912    GT:AD:DP:GQ:PL    0/1:11,8:19:99:202,0,316
1    47691568    rs5773940    GCAGA    G    196.88    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=60.9862;IndelType=D;MQ=58.88;MQ0=0;MQRankSum=1.652;QD=17.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465912    GT:AD:DP:GQ:PL    0/1:6,5:11:99:236,0,279
1    47717189    rs2758735    A    G    910.47    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.248;DB;DP=78;Dels=0.0;FS=6.122;HRun=2;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=0.365;QD=11.67;ReadPosRankSum=-1.127;SNPEFF_AMINO_ACID_CHANGE=P1144;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47716294_47717594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396221    GT:AD:DP:GQ:PL    0/1:44,34:78:99:940,0,1465
1    47726087    rs13376679    T    C    725.75    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DB;DP=72;Dels=0.0;FS=2.04;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.167;QD=10.08;ReadPosRankSum=1.073;SNPEFF_AMINO_ACID_CHANGE=H967R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47725961_47726211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396221    GT:AD:DP:GQ:PL    0/1:46,26:72:99:756,0,1437
1    47735280    rs2742104    T    C    109.66    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.001;QD=6.45;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243182    GT:AD:DP:GQ:PL    0/1:12,5:17:99:140,0,404
1    47753405    rs12125261    G    A    122.92    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=8.78;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243182    GT:AD:DP:GQ:PL    0/1:9,5:14:99:153,0,336
1    47759357    .    C    T    167.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=13.95;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243182    GT:AD:DP:GQ:PL    0/1:6,6:12:99:197,0,180
1    47765490    rs9436838    T    C    139.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=17.43;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413565    GT:AD:DP:GQ:PL    0/1:3,5:8:96.19:169,0,96
1    47767141    rs6689687    C    A    134.37    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=9.6;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413565    GT:AD:DP:GQ:PL    0/1:9,5:14:99:164,0,296
1    47767914    rs3125630    G    A    256.12    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.923;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.508;QD=11.14;ReadPosRankSum=-1.569;SNPEFF_AMINO_ACID_CHANGE=A86V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47767906_47768018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243182    GT:AD:DP:GQ:PL    0/1:12,11:23:99:286,0,368
1    47770441    rs3122615    A    C    52.48    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.588;QD=3.5;ReadPosRankSum=-0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243182    GT:AD:DP:GQ:PL    0/1:11,4:15:82.47:82,0,406
1    47770786    rs6692734    T    A    122.88    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.467;QD=8.78;ReadPosRankSum=-2.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243182    GT:AD:DP:GQ:PL    0/1:9,5:14:99:153,0,314
1    47770806    rs12129594    T    C    114.64    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=14.33;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243182    GT:AD:DP:GQ:PL    0/1:3,5:8:95.92:145,0,96
1    47799639    rs7543016    G    C    70.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.68;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=G8R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47799469_47799788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371873    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:101,0,29
1    47838485    rs143299123    CT    C    74.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=12;HaplotypeScore=32.6459;IndelType=D;MQ=56.62;MQ0=0;QD=10.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371873    GT:AD:DP:GQ:PL    1/1:2,5:7:14.91:116,15,0
1    47841038    rs71572659    G    GA    384.13    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DB;DP=19;FS=0.0;HRun=7;HaplotypeScore=47.1747;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.269;QD=20.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371870    GT:AD:DP:GQ:PL    0/1:6,13:19:38.75:423,0,39
1    47841109    rs2253511    T    C    81.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371870    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
1    47842431    rs3125648    G    A    1280.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371870    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1313,105,0
1    47882497    rs34082359    C    T    118.57    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=3.194;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.324;QD=6.24;ReadPosRankSum=-2.083;SNPEFF_AMINO_ACID_CHANGE=A170;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47881744_47883723;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335071    GT:AD:DP:GQ:PL    0/1:14,5:19:99:149,0,349
1    47904909    rs2405913    G    C    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.0;SNPEFF_AMINO_ACID_CHANGE=A368P;SNPEFF_CODON_CHANGE=Gcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_47901689_47906363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334793    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
1    47968317    rs2065947    G    A    1751.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=31.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL356458.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408419    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1784,129,0
1    48086756    rs55907557    C    CCT    994.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DB;DP=51;FS=2.872;HRun=0;HaplotypeScore=407.5864;IndelType=I;MQ=59.9;MQ0=0;MQRankSum=0.189;QD=19.5;ReadPosRankSum=0.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591415.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408520    GT:AD:DP:GQ:PL    1/1:27,24:51:70.99:1037,71,0
1    48086769    rs12563718    A    C    528.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DB;DP=43;Dels=0.02;FS=2.684;HRun=0;HaplotypeScore=5.898;MQ=59.88;MQ0=0;MQRankSum=-1.108;QD=12.01;ReadPosRankSum=2.404;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591415.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408520    GT:AD:DP:GQ:PL    1/1:4,39:43:42.12:562,42,0
1    48688376    rs41287916    A    G    124.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=12.49;ReadPosRankSum=0.336;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC5A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420136    GT:AD:DP:GQ:PL    0/1:5,5:10:99:155,0,180
1    48690229    rs10788884    C    A    35.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.78;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC5A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236495    GT:AD:DP:GQ:PL    0/1:2,2:4:65.11:65,0,71
1    48697733    rs212991    T    G    1154.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_AMINO_ACID_CHANGE=I269M;SNPEFF_CODON_CHANGE=atT/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_48697618_48697823;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC5A9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438567    GT:AD:DP:GQ:PL    1/1:0,31:31:90.28:1188,90,0
1    48697751    rs61997212    C    T    579.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=27;Dels=0.0;FS=6.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.806;QD=21.46;ReadPosRankSum=1.028;SNPEFF_AMINO_ACID_CHANGE=S275;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_48697618_48697823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC5A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438567    GT:AD:DP:GQ:PL    0/1:9,18:27:99:610,0,220
1    48705391    rs11205459    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC5A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420136    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    48708250    rs78427303    C    T    509.11    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.238;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.291;QD=16.97;ReadPosRankSum=-1.721;SNPEFF_AMINO_ACID_CHANGE=A600V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_48708129_48708288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC5A9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438567    GT:AD:DP:GQ:PL    0/1:11,19:30:99:539,0,282
1    48708278    rs75538709    G    A    411.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.723;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=14.69;ReadPosRankSum=1.092;SNPEFF_AMINO_ACID_CHANGE=E609;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_48708129_48708288;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC5A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438567    GT:AD:DP:GQ:PL    0/1:14,14:28:99:441,0,418
1    48764419    rs1056042    C    T    1389.22    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.054;DB;DP=84;Dels=0.0;FS=2.962;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=16.54;ReadPosRankSum=-0.856;SNPEFF_AMINO_ACID_CHANGE=C406Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_48764320_48764565;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396199    GT:AD:DP:GQ:PL    0/1:37,47:84:99:1419,0,1179
1    48821318    .    C    CA    523.01    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.328;DP=34;FS=0.0;HRun=9;HaplotypeScore=81.5075;IndelType=I;MQ=58.44;MQ0=0;MQRankSum=0.72;QD=15.38;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371841    GT:AD:DP:GQ:PL    0/1:15,19:34:99:562,0,216
1    48866555    rs41289162    A    G    192.06    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.415;QD=11.3;ReadPosRankSum=1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371843    GT:AD:DP:GQ:PL    0/1:10,7:17:99:222,0,365
1    48869288    rs3738309    T    A    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371843    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    48902552    rs78784453    G    A    553.50    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DB;DP=46;Dels=0.0;FS=5.012;HRun=0;HaplotypeScore=0.6651;MQ=44.74;MQ0=3;MQRankSum=-4.072;QD=12.03;ReadPosRankSum=-2.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371843    GT:AD:DP:GQ:PL    0/1:19,27:46:99:583,0,572
1    48902977    rs2261674    G    C    957.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.71;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371843    GT:AD:DP:GQ:PL    1/1:0,32:32:87.23:990,87,0
1    48916927    rs2787870    C    T    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371843    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
1    48937691    rs2275309    A    T    111.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=15;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=7.45;ReadPosRankSum=1.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471975    GT:AD:DP:GQ:PL    0/1:9,6:15:99:142,0,293
1    49056695    rs7543402    T    C    487.59    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=34;Dels=0.0;FS=5.473;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.225;QD=14.34;ReadPosRankSum=1.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334103    GT:AD:DP:GQ:PL    0/1:13,21:34:99:518,0,344
1    49100332    rs319983    C    T    973.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.644;DB;DP=76;Dels=0.0;FS=2.646;HRun=1;HaplotypeScore=0.9578;MQ=59.39;MQ0=0;MQRankSum=1.213;QD=12.81;ReadPosRankSum=-0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334103    GT:AD:DP:GQ:PL    0/1:38,38:76:99:1004,0,1227
1    49128720    rs320007    C    T    294.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.306;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.265;QD=14.73;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334103    GT:AD:DP:GQ:PL    0/1:10,10:20:99:325,0,347
1    49202240    rs4926530    T    C    347.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371838    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:381,33,0
1    49208095    rs56653741    A    AG    197.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=10.887;IndelType=I;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371838    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
1    49208618    rs1934393    G    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371838    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    49224584    rs3820445    G    T    1975.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=37.99;SNPEFF_AMINO_ACID_CHANGE=R245;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_49224572_49224956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEND5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371833    GT:AD:DP:GQ:PL    1/1:0,52:52:99:2009,147,0
1    49332724    rs6703833    A    C    71.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.2;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371836    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,137
1    49332969    rs61785986    A    G    448.44    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.018;QD=13.59;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371836    GT:AD:DP:GQ:PL    0/1:16,17:33:99:478,0,551
1    49511424    rs3934240    A    G    526.39    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=2.641;DB;DP=52;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-0.323;QD=10.12;ReadPosRankSum=-0.095;SNPEFF_AMINO_ACID_CHANGE=H136;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_49511256_49511472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411952    GT:AD:DP:GQ:PL    0/1:33,19:52:99:556,0,1146
1    50162840    rs6689057    C    T    214.15    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.096;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=11.27;ReadPosRankSum=-0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371836    GT:AD:DP:GQ:PL    0/1:11,8:19:99:244,0,401
1    50310802    rs7533801    T    C    4390.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.81;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371836    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4390,328,0
1    50311454    rs4926833    G    A    827.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.794;DB;DP=63;Dels=0.0;FS=5.353;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.478;QD=13.13;ReadPosRankSum=-0.672;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371836    GT:AD:DP:GQ:PL    0/1:35,28:63:99:857,0,953
1    50572096    rs12138061    C    A    495.86    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.06;DB;DP=51;Dels=0.0;FS=1.591;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.2;QD=9.72;ReadPosRankSum=0.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357083    GT:AD:DP:GQ:PL    0/1:31,20:51:99:526,0,960
1    50661411    rs2480683    C    T    2303.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.44;SNPEFF_AMINO_ACID_CHANGE=P229;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_50661233_50661458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371823    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2336,181,0
1    50661688    rs2480682    T    C    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357083    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    50666515    rs2494876    C    T    3157.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_AMINO_ACID_CHANGE=P270S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_50666481_50667074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371823    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3190,253,0
1    50956163    rs57779128    AAAGG    A    499.24    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=241.4591;IndelType=D;MQ=40.25;MQ0=0;MQRankSum=-1.34;QD=16.64;ReadPosRankSum=1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371778    GT:AD:DP:GQ:PL    0/1:20,10:30:99:538,0,505
1    50956212    .    C    CAAATACAGTGG    9283.10    PASS    AC=2;AF=1.00;AN=2;DP=63;FS=0.0;HRun=0;HaplotypeScore=519.0315;IndelType=I;MQ=32.63;MQ0=0;QD=147.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371778    GT:AD:DP:GQ:PL    1/1:37,24:63:99:9283,181,0
1    50957509    rs1149790    A    T    572.49    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.871;DB;DP=35;Dels=0.0;FS=3.399;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.778;QD=16.36;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371778    GT:AD:DP:GQ:PL    0/1:16,19:35:99:602,0,491
1    51121198    rs11205753    T    C    496.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.496;DB;DP=38;Dels=0.0;FS=5.701;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.088;QD=13.08;ReadPosRankSum=1.197;SNPEFF_AMINO_ACID_CHANGE=V220;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_51121114_51121200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371778    GT:AD:DP:GQ:PL    0/1:19,19:38:99:527,0,574
1    51180660    rs17384533    A    G    775.94    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.141;DB;DP=38;Dels=0.0;FS=3.18;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.141;QD=20.42;ReadPosRankSum=-0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371778    GT:AD:DP:GQ:PL    0/1:12,26:38:99:806,0,289
1    51180704    rs77935192    C    A    283.77    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.801;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.96;QD=8.35;ReadPosRankSum=-0.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371778    GT:AD:DP:GQ:PL    0/1:24,10:34:99:314,0,750
1    51435946    rs41285700    C    T    116.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.38;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKN2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262662    GT:AD:DP:GQ:PL    0/1:2,4:6:65.23:146,0,65
1    51753812    rs635590    G    A    1276.99    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=4.781;DB;DP=101;Dels=0.0;FS=1.814;HRun=0;HaplotypeScore=0.9159;MQ=59.5;MQ0=0;MQRankSum=-0.56;QD=12.64;ReadPosRankSum=2.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525906    GT:AD:DP:GQ:PL    0/1:59,42:101:99:1307,0,1595
1    51826921    rs17567    T    C    679.70    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=55;Dels=0.0;FS=3.786;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-1.391;QD=12.36;ReadPosRankSum=-0.503;SNPEFF_AMINO_ACID_CHANGE=I499M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_51826843_51827027;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396122    GT:AD:DP:GQ:PL    0/1:32,23:55:99:710,0,1005
1    51829823    rs72694132    A    C    61.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=8.73;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371730    GT:AD:DP:GQ:PL    0/1:4,3:7:91.14:91,0,145
1    51873951    rs1065754    G    A    2149.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=35.82;SNPEFF_AMINO_ACID_CHANGE=Y120;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_51873807_51874004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396122    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2182,157,0
1    51905949    rs66883041    CTGTG    C    279.32    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.289;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=140.6977;IndelType=D;MQ=55.31;MQ0=0;MQRankSum=0.993;QD=15.52;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371730    GT:AD:DP:GQ:PL    0/1:5,8:18:99:318,0,349
1    51912416    rs150480138    C    T    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371730    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    51926909    rs72696156    G    A    174.86    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=56.85;MQ0=0;MQRankSum=-0.689;QD=11.66;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371727    GT:AD:DP:GQ:PL    0/1:5,9:15:99:205,0,178
1    51929504    rs11299483    TA    T    425.02    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.046;DB;DP=40;FS=9.421;HRun=2;HaplotypeScore=102.7046;IndelType=D;MQ=59.7;MQ0=0;MQRankSum=-0.776;QD=10.63;ReadPosRankSum=0.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371727    GT:AD:DP:GQ:PL    0/1:24,16:40:99:464,0,900
1    52266242    rs8375    G    A    1291.18    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=4.295;DB;DP=83;Dels=0.0;FS=0.84;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=15.56;ReadPosRankSum=1.261;SNPEFF_AMINO_ACID_CHANGE=P239;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_52266228_52266355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371665    GT:AD:DP:GQ:PL    0/1:41,42:83:99:1321,0,1080
1    52279650    rs2982846    T    G    430.91    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.681;DB;DP=33;Dels=0.0;FS=6.139;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.208;QD=13.06;ReadPosRankSum=0.982;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473805    GT:AD:DP:GQ:PL    0/1:16,17:33:99:461,0,452
1    52289220    rs67976949    TGTATTAAGGTCAA    T    1244.64    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.802;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=247.2402;IndelType=D;MQ=51.02;MQ0=0;MQRankSum=-1.954;QD=59.27;ReadPosRankSum=1.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475715    GT:AD:DP:GQ:PL    0/1:9,12:21:99:1284,0,1747
1    52290984    rs11205896    T    G    773.02    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=3.933;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.75;MQ0=0;MQRankSum=0.14;QD=8.22;ReadPosRankSum=1.404;SNPEFF_AMINO_ACID_CHANGE=G205;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_52290959_52291054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544028    GT:AD:DP:GQ:PL    0/1:66,28:94:99:803,0,1862
1    52293570    rs2077725    G    A    158.46    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=7.55;ReadPosRankSum=0.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352171    GT:AD:DP:GQ:PL    0/1:13,8:21:99:188,0,481
1    52293638    rs706495    G    A    417.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352171    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:451,33,0
1    52303005    rs12944    G    A    150.16    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.77;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491410    GT:AD:DP:GQ:PL    0/1:3,5:8:97.51:180,0,98
1    52305664    rs7520502    G    A    39.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352171    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:69,0,25
1    52306063    rs35723519    ATCT    A    858.73    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=4.805;DB;DP=60;FS=1.329;HRun=0;HaplotypeScore=263.057;IndelType=D;MQ=59.6;MQ0=0;MQRankSum=1.856;QD=14.31;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=ED154D;SNPEFF_CODON_CHANGE=gaagat/gat;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_1_52305898_52306186;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352171    GT:AD:DP:GQ:PL    0/1:33,27:60:99:898,0,1579
1    52402856    rs10888741    T    G    245.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371655    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
1    52402956    rs10888742    G    A    2018.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=37.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371655    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2052,153,0
1    52489322    rs2783178    G    A    292.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TXNDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371626    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:326,24,0
1    52490418    rs4926906    C    T    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TXNDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371626    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
1    52517412    rs7529324    A    G    2087.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TXNDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371626    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2120,163,0
1    52530323    rs2809951    G    A    114.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTF3L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313334    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
1    52729432    rs75677938    C    G    166.09    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.66;MQ0=0;MQRankSum=0.898;QD=16.61;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287727    GT:AD:DP:GQ:PL    0/1:2,8:10:47.03:196,0,47
1    52820226    rs2820334    G    A    1863.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.63;MQ0=0;QD=36.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CC2D1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485966    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1896,141,0
1    52912122    rs72306025    T    TA    201.22    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=42;FS=0.0;HRun=11;HaplotypeScore=125.4817;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.071;QD=4.79;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257177    GT:AD:DP:GQ:PL    0/1:30,11:42:99:240,0,375
1    52943225    rs835033    C    A    39.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.97;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473856    GT:AD:DP:GQ:PL    0/1:2,3:5:69.84:70,0,71
1    52991638    rs12123698    C    T    1818.28    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=3.827;DB;DP=95;Dels=0.0;FS=0.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.255;QD=19.14;ReadPosRankSum=0.309;SNPEFF_AMINO_ACID_CHANGE=P105;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_52991235_52992045;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257177    GT:AD:DP:GQ:PL    0/1:37,58:95:99:1848,0,1053
1    53072454    rs1970951    T    C    1159.75    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=71;Dels=0.0;FS=1.029;HRun=0;HaplotypeScore=3.5884;MQ=55.63;MQ0=0;MQRankSum=0.775;QD=16.33;ReadPosRankSum=0.019;SNPEFF_AMINO_ACID_CHANGE=F79;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53072356_53072617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361314    GT:AD:DP:GQ:PL    0/1:33,38:71:99:1190,0,935
1    53072741    rs1970950    A    G    460.39    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.844;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=0.414;QD=13.15;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361314    GT:AD:DP:GQ:PL    0/1:19,16:35:99:490,0,684
1    53072796    rs1970949    G    C    100.83    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=11.2;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361314    GT:AD:DP:GQ:PL    0/1:5,4:9:99:131,0,180
1    53237526    rs1571979    G    A    584.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294353    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:618,45,0
1    53245472    rs9661082    A    T    1499.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294353    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1533,120,0
1    53245849    rs7526275    C    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294353    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    53250650    rs6588443    G    A    2855.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.38;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=G398;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53250549_53250725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294353    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2889,226,0
1    53255587    rs67389144    CT    C    122.87    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=0.531;DB;DP=23;FS=0.0;HRun=13;HaplotypeScore=120.3849;IndelType=D;MQ=56.92;MQ0=0;MQRankSum=1.184;QD=5.34;ReadPosRankSum=1.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294353    GT:AD:DP:GQ:PL    0/1:13,10:23:99:162,0,198
1    53262378    .    A    T    202.82    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.028;QD=7.8;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294353    GT:AD:DP:GQ:PL    0/1:18,8:26:99:233,0,672
1    53282077    rs12733669    A    G    185.13    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.823;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.713;QD=9.26;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294353    GT:AD:DP:GQ:PL    0/1:13,7:20:99:215,0,452
1    53286967    rs12731800    A    G    42.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.59;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545132    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:72,0,69
1    53320274    rs480299    G    T    1319.22    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=79;Dels=0.0;FS=3.404;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.035;QD=16.7;ReadPosRankSum=-1.041;SNPEFF_AMINO_ACID_CHANGE=E76D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53320137_53320302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371528    GT:AD:DP:GQ:PL    0/1:35,44:79:99:1349,0,1112
1    53323492    rs10788945    C    A    1158.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371528    GT:AD:DP:GQ:PL    1/1:0,29:29:87.29:1192,87,0
1    53323571    rs11206035    T    C    103.55    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.51;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371528    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,167
1    53326210    rs546334    T    C    101.87    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=16.98;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371528    GT:AD:DP:GQ:PL    0/1:1,5:6:24.96:132,0,25
1    53333116    rs557847    A    G    295.83    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.162;QD=14.09;ReadPosRankSum=-0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371528    GT:AD:DP:GQ:PL    0/1:10,11:21:99:326,0,354
1    53351349    rs10581739    ATT    A    303.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=49.3312;IndelType=D;MQ=59.92;MQ0=0;MQRankSum=0.209;QD=18.99;ReadPosRankSum=-0.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371528    GT:AD:DP:GQ:PL    0/1:8,8:16:99:343,0,382
1    53364976    rs576891    A    G    264.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.971;QD=14.69;ReadPosRankSum=-0.706;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYG11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371528    GT:AD:DP:GQ:PL    0/1:9,9:18:99:294,0,279
1    53513437    rs1288362    T    C    115.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.45;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371509    GT:AD:DP:GQ:PL    0/1:4,4:8:99:146,0,141
1    53535493    rs41313375    C    G    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.42;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=P18R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53535473_53535839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371500    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
1    53543112    rs946590    C    G    806.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471210    GT:AD:DP:GQ:PL    1/1:0,24:24:69.18:839,69,0
1    53543312    rs12745973    C    T    731.82    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=0.499;DB;DP=78;Dels=0.0;FS=3.294;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=1.193;QD=9.38;ReadPosRankSum=0.878;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471210    GT:AD:DP:GQ:PL    0/1:49,29:78:99:762,0,1515
1    53544439    rs1288388    G    A    1773.75    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=119;Dels=0.0;FS=0.826;HRun=0;HaplotypeScore=2.0641;MQ=59.81;MQ0=0;MQRankSum=-0.407;QD=14.91;ReadPosRankSum=0.489;SNPEFF_AMINO_ACID_CHANGE=P325;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53544037_53544694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395871    GT:AD:DP:GQ:PL    0/1:56,63:119:99:1804,0,1598
1    53544578    rs11206088    T    C    236.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=16.87;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L372;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53544037_53544694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395871    GT:AD:DP:GQ:PL    0/1:6,8:14:99:266,0,206
1    53544597    rs1288389    T    C    253.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=V378A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53544037_53544694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395871    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:286,24,0
1    53553702    rs1288400    A    G    710.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=30.89;SNPEFF_AMINO_ACID_CHANGE=S554;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53552855_53553899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371494    GT:AD:DP:GQ:PL    1/1:0,23:23:66.14:744,66,0
1    53553714    rs140010762    G    A    253.99    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.168;DB;DP=29;Dels=0.0;FS=1.531;HRun=0;HaplotypeScore=2.5584;MQ=58.55;MQ0=0;MQRankSum=0.839;QD=8.76;ReadPosRankSum=-0.647;SNPEFF_AMINO_ACID_CHANGE=T550;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53552855_53553899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371494    GT:AD:DP:GQ:PL    0/1:19,10:29:99:284,0,585
1    53553754    rs1288401    T    C    111.22    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.503;DB;DP=30;Dels=0.0;FS=1.737;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.402;QD=3.71;ReadPosRankSum=0.229;SNPEFF_AMINO_ACID_CHANGE=Q537R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53552855_53553899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371494    GT:AD:DP:GQ:PL    0/1:23,7:30:99:141,0,655
1    53554457    .    A    G    58.28    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.12;MQ0=0;MQRankSum=-0.727;QD=14.57;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312553    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:88,0,28
1    53554533    rs35707549    A    AT    329.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.034;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=23.4453;IndelType=I;MQ=53.95;MQ0=0;MQRankSum=-0.37;QD=27.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312553    GT:AD:DP:GQ:PL    0/1:3,9:12:80.81:369,0,81
1    53558270    rs1288406    A    G    503.85    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.279;DB;DP=28;Dels=0.0;FS=1.631;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=17.99;ReadPosRankSum=1.033;SNPEFF_AMINO_ACID_CHANGE=R329;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53558226_53558459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371494    GT:AD:DP:GQ:PL    0/1:9,19:28:99:534,0,250
1    53568980    rs2242274    G    A    148.58    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.336;QD=13.51;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371491    GT:AD:DP:GQ:PL    0/1:6,5:11:99:179,0,118
1    53571288    rs1288422    C    G    615.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371491    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:648,51,0
1    53574076    rs1679938    G    A    189.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=12.66;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371494    GT:AD:DP:GQ:PL    0/1:6,9:15:99:220,0,199
1    53574123    rs1769289    C    T    984.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371494    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:1018,75,0
1    53600078    rs3737989    A    G    132.93    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.361;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.6993;MQ=59.14;MQ0=0;MQRankSum=-0.472;QD=4.92;ReadPosRankSum=0.139;SNPEFF_AMINO_ACID_CHANGE=P53;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53600022_53600101;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371491    GT:AD:DP:GQ:PL    0/1:18,8:27:99:163,0,569
1    53675532    rs12737375    T    C    60.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.76;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294360    GT:AD:DP:GQ:PL    0/1:6,3:9:90.81:91,0,211
1    53676448    rs1799821    G    A    1251.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.93;SNPEFF_AMINO_ACID_CHANGE=V368I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53675687_53676991;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371486    GT:AD:DP:GQ:PL    1/1:0,33:33:96.29:1285,96,0
1    53679229    rs1799822    A    G    312.89    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=45;Dels=0.0;FS=1.539;HRun=0;HaplotypeScore=3.9444;MQ=60.0;MQ0=0;MQRankSum=-0.04;QD=6.95;ReadPosRankSum=-0.672;SNPEFF_AMINO_ACID_CHANGE=M647V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53678936_53679869;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371486    GT:AD:DP:GQ:PL    0/1:32,12:45:99:343,0,1010
1    53680090    rs1056425    G    A    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371480    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    53681699    rs1134688    T    G    1996.09    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=174;Dels=0.0;FS=7.2;HRun=1;HaplotypeScore=4.67;MQ=59.87;MQ0=0;MQRankSum=1.218;QD=11.47;ReadPosRankSum=1.361;SNPEFF_AMINO_ACID_CHANGE=Q103P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53681663_53681728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf123;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371480    GT:AD:DP:GQ:PL    0/1:101,72:174:99:2026,0,2715
1    53684525    rs436887    C    G    1006.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474227    GT:AD:DP:GQ:PL    1/1:0,35:35:84.25:1039,84,0
1    53694388    rs2275087    T    C    149.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=18.74;ReadPosRankSum=1.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGOH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462941    GT:AD:DP:GQ:PL    0/1:2,6:8:61.34:180,0,61
1    53699129    rs17192655    G    C    399.07    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.021;QD=12.87;ReadPosRankSum=1.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGOH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371466    GT:AD:DP:GQ:PL    0/1:16,15:31:99:429,0,526
1    53712727    rs5174    C    T    175.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.196;DB;DP=20;Dels=0.0;FS=4.415;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.733;QD=8.77;ReadPosRankSum=0.733;SNPEFF_AMINO_ACID_CHANGE=R446Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53712240_53712728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000465675    GT:AD:DP:GQ:PL    0/1:12,8:20:99:205,0,338
1    53716416    rs3737983    G    A    1138.07    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.764;DB;DP=60;Dels=0.0;FS=1.053;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=18.97;ReadPosRankSum=0.18;SNPEFF_AMINO_ACID_CHANGE=D427;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53716362_53716534;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000465675    GT:AD:DP:GQ:PL    0/1:25,35:60:99:1168,0,706
1    53732315    rs2297660    G    T    570.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=40;Dels=0.0;FS=1.171;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=1.826;QD=14.25;ReadPosRankSum=-0.014;SNPEFF_AMINO_ACID_CHANGE=G249;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_53732145_53732319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347547    GT:AD:DP:GQ:PL    0/1:20,20:40:99:600,0,649
1    53736613    rs7542607    A    G    161.57    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.195;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.355;QD=7.02;ReadPosRankSum=-2.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306052    GT:AD:DP:GQ:PL    0/1:15,8:23:99:192,0,511
1    53746134    rs1288518    G    A    39.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.88;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306052    GT:AD:DP:GQ:PL    0/1:3,2:5:69.37:69,0,85
1    53974987    rs10749691    G    T    93.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312233    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
1    53990321    rs541224    C    T    180.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312233    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:214,18,0
1    53990569    .    T    TG    326.83    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.416;DP=29;FS=0.0;HRun=6;HaplotypeScore=60.7148;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.244;QD=11.27;ReadPosRankSum=0.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312233    GT:AD:DP:GQ:PL    0/1:17,12:29:99:366,0,378
1    53990715    rs492600    T    C    67.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312233    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
1    53995415    .    T    G    30.92    QDFilter2    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DP=21;Dels=0.0;FS=15.441;HRun=2;HaplotypeScore=1.4105;MQ=57.77;MQ0=0;MQRankSum=-0.361;QD=1.47;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312233    GT:AD:DP:GQ:PL    0/1:6,15:21:60.91:61,0,142
1    54060016    rs35227000    G    C    263    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=21;Dels=0.0;FS=1.74;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.88;QD=12.52;ReadPosRankSum=-0.246;SNPEFF_AMINO_ACID_CHANGE=A187G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_54059781_54060663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312233    GT:AD:DP:GQ:PL    0/1:10,11:21:99:293,0,337
1    54060248    rs4307514    T    C    301.22    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=10.39;ReadPosRankSum=-0.268;SNPEFF_AMINO_ACID_CHANGE=T110A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_54059781_54060663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312233    GT:AD:DP:GQ:PL    0/1:15,14:29:99:331,0,491
1    54331763    rs1883453    A    G    222.34    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.467;QD=15.88;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=YIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412288    GT:AD:DP:GQ:PL    0/1:5,9:14:99:252,0,161
1    54344282    rs2272928    C    A    176.27    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.725;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=7.05;ReadPosRankSum=-1.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=YIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072644    GT:AD:DP:GQ:PL    0/1:18,7:25:99:206,0,631
1    54370306    rs2294512    G    A    1162.57    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.171;DB;DP=87;Dels=0.0;FS=1.039;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.992;QD=13.36;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DIO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322679    GT:AD:DP:GQ:PL    0/1:47,40:87:99:1193,0,1474
1    54375570    rs2235544    C    A    366.36    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=30;Dels=0.0;FS=4.228;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=12.21;ReadPosRankSum=-0.353;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DIO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529589    GT:AD:DP:GQ:PL    0/1:16,14:30:99:396,0,507
1    54474472    rs6672989    T    C    33.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.198;QD=4.77;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371360    GT:AD:DP:GQ:PL    0/1:5,2:7:63.39:63,0,181
1    54477726    rs55766128    T    G    46.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=11.66;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371360    GT:AD:DP:GQ:PL    0/1:1,3:4:28.63:77,0,29
1    54483694    rs34764952    C    T    403.62    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=25;Dels=0.0;FS=3.624;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=16.14;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371360    GT:AD:DP:GQ:PL    0/1:11,14:25:99:434,0,362
1    54502266    .    G    GTC    800.54    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=4.551;DP=66;FS=7.961;HRun=0;HaplotypeScore=386.5939;IndelType=I;MQ=52.49;MQ0=0;MQRankSum=-5.214;QD=12.13;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420738    GT:AD:DP:GQ:PL    0/1:52,12:66:99:840,0,1765
1    54502268    rs66670965    A    AAGGGTT    2128.98    PASS    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=5.078;DB;DP=67;FS=5.3;HRun=0;HaplotypeScore=435.6268;IndelType=I;MQ=52.61;MQ0=0;MQRankSum=-4.778;QD=31.78;ReadPosRankSum=-2.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420738    GT:AD:DP:GQ:PL    0/1:53,13:67:99:2168,0,2511
1    54511200    rs41538044    A    G    552.50    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.261;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=12.56;ReadPosRankSum=0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234831    GT:AD:DP:GQ:PL    0/1:24,20:44:99:582,0,868
1    54519800    rs74085143    G    A    38.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.78;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCEANC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234827    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:68,0,32
1    54561916    rs7555099    C    T    687.41    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=52;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.234;QD=13.22;ReadPosRankSum=0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCEANC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234827    GT:AD:DP:GQ:PL    0/1:29,23:52:99:717,0,952
1    54605318    rs76608277    T    TGG    829.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.502;DB;DP=32;FS=0.0;HRun=8;HaplotypeScore=129.1457;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.386;QD=25.92;ReadPosRankSum=0.231;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_54604668_54605779;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDCP2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000371330    GT:AD:DP:GQ:PL    1/1:3,16:32:79.13:872,79,0
1    54606804    rs3766465    C    T    442.75    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7542;MQ=60.0;MQ0=0;MQRankSum=1.48;QD=19.25;ReadPosRankSum=1.833;SNPEFF_AMINO_ACID_CHANGE=G244R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_54606771_54607106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDCP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371330    GT:AD:DP:GQ:PL    0/1:8,15:23:99:473,0,169
1    54607051    rs671103    A    G    751.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=Y161;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_54606771_54607106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDCP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371330    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:784,60,0
1    54607157    rs671539    G    A    93.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.63;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371330    GT:AD:DP:GQ:PL    0/1:2,4:6:54.74:124,0,55
1    54618435    rs7528345    A    T    455.90    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.45;MQ0=0;MQRankSum=-0.686;QD=15.2;ReadPosRankSum=-1.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371330    GT:AD:DP:GQ:PL    0/1:14,16:30:99:486,0,441
1    54681920    rs13571    G    C    1759.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_AMINO_ACID_CHANGE=C235S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_54681814_54682017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPL37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336230    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1792,135,0
1    54686374    rs612711    T    C    1150.02    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.021;DB;DP=88;Dels=0.0;FS=3.219;HRun=1;HaplotypeScore=4.3284;MQ=59.74;MQ0=0;MQRankSum=-1.741;QD=13.07;ReadPosRankSum=0.242;SNPEFF_AMINO_ACID_CHANGE=L366;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_54686284_54686529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPL37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329505    GT:AD:DP:GQ:PL    0/1:40,47:88:99:1180,0,1203
1    54704567    rs11206312    A    G    284.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420121    GT:AD:DP:GQ:PL    1/1:0,11:11:30.05:318,30,0
1    54704629    rs2274664    C    T    272.94    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.894;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.141;QD=9.75;ReadPosRankSum=-1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420121    GT:AD:DP:GQ:PL    0/1:17,11:28:99:303,0,615
1    54706733    rs2297027    A    G    203.97    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=55.52;MQ0=0;MQRankSum=0.555;QD=12.75;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361350    GT:AD:DP:GQ:PL    0/1:7,9:16:99:234,0,191
1    54707604    .    T    C    33.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=4.75;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361350    GT:AD:DP:GQ:PL    0/1:4,3:7:63.23:63,0,150
1    54946982    rs12030551    T    C    148.37    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=16.49;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,5:9:99:178,0,127
1    55060047    rs11206392    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343744    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    55067185    .    G    A    32.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=4.06;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479837    GT:AD:DP:GQ:PL    0/1:5,3:8:62.44:62,0,175
1    55069790    rs892446    C    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479837    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    55069986    rs746503    T    C    1072.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479837    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1106,81,0
1    55071024    rs1655532    T    G    77.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM151A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294370    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
1    55072726    rs1616691    T    C    338.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM151A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294370    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:371,27,0
1    55074463    rs1655530    T    C    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM151A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294370    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:126,9,0
1    55074840    rs1617287    T    A    1051.95    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.536;DB;DP=87;Dels=0.0;FS=3.027;HRun=0;HaplotypeScore=3.3572;MQ=58.93;MQ0=0;MQRankSum=-0.355;QD=12.09;ReadPosRankSum=-0.553;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM151A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294370    GT:AD:DP:GQ:PL    0/1:46,41:87:99:1082,0,1489
1    55075452    rs1368883    G    A    465.54    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=31;Dels=0.0;FS=3.722;HRun=0;HaplotypeScore=0.7887;MQ=59.25;MQ0=0;MQRankSum=0.042;QD=15.02;ReadPosRankSum=-0.586;SNPEFF_AMINO_ACID_CHANGE=A416V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55074855_55075614;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM151A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302250    GT:AD:DP:GQ:PL    0/1:14,17:31:99:496,0,281
1    55078046    rs1655528    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343744    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    55080612    rs112970628    G    GGTGTGT    445.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=81.7503;IndelType=I;MQ=55.8;MQ0=0;QD=49.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343744    GT:AD:DP:GQ:PL    1/1:4,4:9:18.06:487,18,0
1    55080629    rs1702015    A    G    72.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.64;MQ0=0;QD=14.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343744    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:105,9,0
1    55080635    rs1655525    G    A    68.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.64;MQ0=0;QD=13.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343744    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:101,9,0
1    55085499    rs11206396    T    C    303.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.734;DB;DP=35;Dels=0.0;FS=1.478;HRun=3;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.926;QD=8.68;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371316    GT:AD:DP:GQ:PL    0/1:21,14:35:99:334,0,731
1    55085684    .    GA    G    506.98    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.328;DP=37;FS=0.0;HRun=2;HaplotypeScore=201.5684;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.363;QD=13.7;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371316    GT:AD:DP:GQ:PL    0/1:19,18:37:99:546,0,617
1    55085703    rs11583256    G    T    328.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.014;DB;DP=28;Dels=0.0;FS=2.251;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.286;QD=11.72;ReadPosRankSum=0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371316    GT:AD:DP:GQ:PL    0/1:14,14:28:99:358,0,468
1    55118566    rs1655520    C    G    2154.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409996    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2187,172,0
1    55119289    rs9332417    G    C    2548.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_AMINO_ACID_CHANGE=L230;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55118526_55119830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339553    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2582,187,0
1    55119534    rs17399810    C    T    3358.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5178;MQ=59.51;MQ0=0;QD=35.36;SNPEFF_AMINO_ACID_CHANGE=S312F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55118526_55119830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339553    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3359,250,0
1    55119546    rs1655518    A    G    3104.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5184;MQ=59.5;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=E316G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55118526_55119830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339553    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3137,235,0
1    55130931    rs2078273    C    T    151.36    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=21;Dels=0.0;FS=4.481;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.27;QD=7.21;ReadPosRankSum=-0.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472987    GT:AD:DP:GQ:PL    0/1:13,8:21:99:181,0,408
1    55130946    rs6703113    G    C    132.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.38;QD=8.27;ReadPosRankSum=-1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472987    GT:AD:DP:GQ:PL    0/1:10,6:16:99:162,0,337
1    55130972    rs471724    C    T    87.88    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=9.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472987    GT:AD:DP:GQ:PL    0/1:5,4:9:99:118,0,134
1    55134379    rs627095    C    T    431.41    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.057;QD=25.38;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472987    GT:AD:DP:GQ:PL    0/1:4,13:17:99:461,0,115
1    55139618    rs571199    G    A    269.59    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.256;DB;DP=23;Dels=0.0;FS=5.328;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.093;QD=11.72;ReadPosRankSum=0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478097    GT:AD:DP:GQ:PL    0/1:13,10:23:99:300,0,373
1    55139741    rs570218    A    G    784.16    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.346;DB;DP=60;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.76;QD=13.07;ReadPosRankSum=0.917;SNPEFF_AMINO_ACID_CHANGE=H136R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55139689_55139824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454855    GT:AD:DP:GQ:PL    0/1:29,31:60:99:814,0,899
1    55145897    rs17396131    G    A    32.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.42;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339553    GT:AD:DP:GQ:PL    0/1:3,2:5:62.10:62,0,111
1    55167773    rs646356    T    A    501.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_AMINO_ACID_CHANGE=V1099D;SNPEFF_CODON_CHANGE=gTc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55167763_55167918;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421030    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:534,39,0
1    55172201    .    A    G    1000.96    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DP=81;Dels=0.0;FS=2.191;HRun=0;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;MQRankSum=-0.454;QD=12.36;ReadPosRankSum=-0.056;SNPEFF_AMINO_ACID_CHANGE=M1220V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55172108_55172210;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HEATR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421030    GT:AD:DP:GQ:PL    0/1:41,40:81:99:1031,0,1322
1    55251689    rs586462    T    C    1012.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.93;SNPEFF_AMINO_ACID_CHANGE=E110;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55251656_55251817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448308    GT:AD:DP:GQ:PL    1/1:0,29:29:78.22:1046,78,0
1    55253433    rs146222875    C    T    382.56    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.052;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=-0.83;QD=14.71;ReadPosRankSum=2.387;SNPEFF_AMINO_ACID_CHANGE=T11;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55253384_55253465;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448308    GT:AD:DP:GQ:PL    0/1:11,15:26:99:413,0,321
1    55253575    rs665118    T    C    482.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=24.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371274    GT:AD:DP:GQ:PL    1/1:0,20:20:45.12:516,45,0
1    55266845    rs1147984    C    T    361.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358193    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:394,30,0
1    55271774    rs757581    A    G    31.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371273    GT:AD:DP:GQ:PL    1/1:0,3:3:6:63,6,0
1    55272481    rs685648    T    C    93.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358193    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
1    55273580    rs9782980    G    T    2776.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9497;MQ=59.73;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=G126C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55273562_55273684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358193    GT:AD:DP:GQ:PL    1/1:0,83:84:99:2809,208,0
1    55277430    rs10788986    T    A    650.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358193    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:683,54,0
1    55277599    rs600499    T    C    1252.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_AMINO_ACID_CHANGE=Y205H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55277467_55277604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358193    GT:AD:DP:GQ:PL    1/1:0,40:40:96.31:1286,96,0
1    55282556    rs733168    A    G    437.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358193    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:471,36,0
1    55282979    rs4926657    A    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
1    55319902    rs718265    A    G    456.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.45;MQ0=0;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=I126;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55319710_55319907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537443    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:490,36,0
1    55330966    rs611057    T    C    357.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371269    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:390,30,0
1    55336950    rs608458    C    G    289.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371269    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:322,27,0
1    55457337    rs2500325    A    G    263.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371268    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:297,27,0
1    55457710    rs2500326    G    A    2305.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_AMINO_ACID_CHANGE=A189;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55457509_55457966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM61;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371268    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2339,169,0
1    55457815    rs2495513    C    T    1422.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.53;MQ0=0;QD=29.04;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371268    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1456,105,0
1    55464743    rs2500340    T    C    169.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.23;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_55464606_55465036;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371265    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
1    55464790    rs2500341    C    G    790.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.92;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_55464606_55465036;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSND;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371265    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:823,63,0
1    55505732    rs2495482    A    G    75.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
1    55509355    rs2495480    C    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    55511995    rs644000    A    G    137.09    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=17.14;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:3,5:8:94.14:167,0,94
1    55512549    rs499718    T    C    191.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:224,18,0
1    55517861    rs613855    C    G    594.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.783;DB;DP=35;Dels=0.0;FS=5.34;HRun=1;HaplotypeScore=1.575;MQ=59.47;MQ0=0;MQRankSum=0.517;QD=16.98;ReadPosRankSum=-0.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:15,20:35:99:624,0,472
1    55517883    rs624612    C    G    609.03    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.98;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3149;MQ=59.54;MQ0=0;MQRankSum=-0.749;QD=14.85;ReadPosRankSum=0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:18,23:41:99:639,0,595
1    55518166    rs625619    G    A    177.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=17.71;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:4,6:10:86.06:207,0,86
1    55518190    rs45597632    AC    A    218.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=8;HaplotypeScore=45.581;IndelType=D;MQ=60.0;MQ0=0;QD=21.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    1/1:1,9:10:27.04:261,27,0
1    55518316    rs2483205    C    T    151.67    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.653;QD=8.92;ReadPosRankSum=-0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:11,6:17:99:182,0,325
1    55518467    rs2495477    A    G    326.82    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.042;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=-0.347;QD=15.56;ReadPosRankSum=-0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452118    GT:AD:DP:GQ:PL    0/1:8,13:21:99:357,0,238
1    55518528    rs494198    C    A    188.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.627;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=13.45;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452118    GT:AD:DP:GQ:PL    0/1:6,8:14:99:218,0,205
1    55523033    rs509504    A    G    1825.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8991;MQ=59.65;MQ0=0;QD=28.08;SNPEFF_AMINO_ACID_CHANGE=Q142;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55523004_55523187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543384    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1858,144,0
1    55523984    rs584626    C    T    216.02    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.54;DB;DP=16;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=13.5;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:9,7:16:99:246,0,246
1    55524116    rs585131    C    T    436.29    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=-1.05;QD=11.48;ReadPosRankSum=1.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:22,16:38:99:466,0,768
1    55524197    rs540796    A    G    798.44    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.502;DB;DP=70;Dels=0.0;FS=0.921;HRun=0;HaplotypeScore=0.9933;MQ=59.34;MQ0=0;MQRankSum=0.332;QD=11.41;ReadPosRankSum=0.948;SNPEFF_AMINO_ACID_CHANGE=Y243C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55524172_55524320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543384    GT:AD:DP:GQ:PL    0/1:39,31:70:99:828,0,982
1    55524237    rs562556    G    A    728.54    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.295;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-1.033;QD=12.78;ReadPosRankSum=-1.099;SNPEFF_AMINO_ACID_CHANGE=V474I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55524172_55524320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:30,27:57:99:759,0,772
1    55529187    rs505151    G    A    602.26    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.713;DB;DP=41;Dels=0.0;FS=2.784;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=-0.307;QD=14.69;ReadPosRankSum=1.323;SNPEFF_AMINO_ACID_CHANGE=G670E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55529042_55530525;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302118    GT:AD:DP:GQ:PL    0/1:16,25:41:99:632,0,415
1    55537966    rs17410238    G    A    1114.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.728;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.72;MQ0=0;MQRankSum=0.59;QD=13.59;ReadPosRankSum=0.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:41,41:82:99:1144,0,1092
1    55538385    rs654674    T    C    377.59    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.626;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=58.99;MQ0=0;MQRankSum=0.56;QD=16.42;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:10,13:23:99:408,0,353
1    55538462    rs17410294    C    T    794.45    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.087;QD=11.19;ReadPosRankSum=0.448;SNPEFF_AMINO_ACID_CHANGE=K2373;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55538459_55538534;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407756    GT:AD:DP:GQ:PL    0/1:41,30:71:99:824,0,1234
1    55543079    rs56235208    T    C    116.05    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=14.51;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472566    GT:AD:DP:GQ:PL    0/1:2,6:8:62.46:146,0,62
1    55545464    rs72019614    ACT    A    161.59    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=233.8262;IndelType=D;MQ=43.31;MQ0=0;MQRankSum=0.68;QD=10.1;ReadPosRankSum=1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472566    GT:AD:DP:GQ:PL    0/1:11,5:16:99:201,0,443
1    55545475    .    A    T    49.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.7907;MQ=41.96;MQ0=0;MQRankSum=-1.517;QD=3.28;ReadPosRankSum=-1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472566    GT:AD:DP:GQ:PL    0/1:6,6:15:79.24:79,0,138
1    55545479    .    ACT    A    213.44    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DP=14;FS=0.0;HRun=0;HaplotypeScore=219.5195;IndelType=D;MQ=40.36;MQ0=0;MQRankSum=-1.892;QD=15.25;ReadPosRankSum=-1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472566    GT:AD:DP:GQ:PL    0/1:9,5:14:99:252,0,324
1    55545484    rs74650614    G    A    63.03    HaplotypeScoreFilter13    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=26.3804;MQ=40.36;MQ0=0;MQRankSum=1.067;QD=4.5;ReadPosRankSum=2.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472566    GT:AD:DP:GQ:PL    0/1:9,5:14:93.02:93,0,201
1    55557859    rs34673217    A    ATT    664.33    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.963;DB;DP=43;FS=4.019;HRun=0;HaplotypeScore=113.6163;IndelType=I;MQ=60.31;MQ0=0;MQRankSum=-0.842;QD=15.1;ReadPosRankSum=-0.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482197    GT:AD:DP:GQ:PL    0/1:29,14:43:99:703,0,1279
1    55557982    rs679941    T    A    200.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482197    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:233,21,0
1    55560796    rs503495    T    C    542.55    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.349;QD=22.61;ReadPosRankSum=-0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:4,20:24:98.74:573,0,99
1    55562125    rs580485    G    T    741.83    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=5.002;DB;DP=52;Dels=0.0;FS=1.711;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.79;QD=14.27;ReadPosRankSum=0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:28,24:52:99:772,0,782
1    55566411    rs67540253    TTAGTC    T    554.73    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=109.81;IndelType=D;MQ=53.61;MQ0=0;MQRankSum=-0.776;QD=27.74;ReadPosRankSum=1.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:9,11:20:99:594,0,791
1    55567143    rs1165282    T    C    317.21    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.867;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=16.7;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:8,11:19:99:347,0,277
1    55567410    rs615652    A    G    841.45    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.864;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=1.321;QD=12.19;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:38,31:69:99:871,0,1232
1    55590015    rs67171713    T    C    55.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.95;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:4,3:7:85.67:86,0,146
1    55590828    rs502793    G    A    166.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=13.85;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:6,6:12:99:196,0,213
1    55614036    rs141587565    CAT    C    418.42    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=61.0108;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=24.61;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:6,11:17:99:457,0,242
1    55619422    rs1165230    G    A    389.43    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.154;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9993;MQ=58.99;MQ0=0;MQRankSum=-0.831;QD=16.93;ReadPosRankSum=-0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:11,12:23:99:419,0,383
1    55619453    rs141688366    ATAC    A    581.32    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=4.653;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=180.5115;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=-1.235;QD=17.62;ReadPosRankSum=1.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:19,14:33:99:620,0,1150
1    55638075    rs1165222    G    A    2108.24    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.931;DB;DP=151;Dels=0.0;FS=2.233;HRun=1;HaplotypeScore=1.8305;MQ=59.39;MQ0=0;MQRankSum=0.97;QD=13.96;ReadPosRankSum=1.138;SNPEFF_AMINO_ACID_CHANGE=T114I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_55638050_55638193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407756    GT:AD:DP:GQ:PL    0/1:81,69:151:99:2138,0,2464
1    55643837    rs67284766    TA    T    582.07    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=4.071;DB;DP=35;FS=2.618;HRun=4;HaplotypeScore=86.6381;IndelType=D;MQ=59.78;MQ0=0;MQRankSum=0.387;QD=16.63;ReadPosRankSum=-1.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294383    GT:AD:DP:GQ:PL    0/1:15,20:35:99:621,0,447
1    57139824    rs2796534    G    A    159.07    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371244    GT:AD:DP:GQ:PL    0/1:1,5:6:19.74:189,0,20
1    57140349    rs11394634    C    CT    139.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=24.745;IndelType=I;MQ=60.0;MQ0=0;QD=19.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371244    GT:AD:DP:GQ:PL    1/1:2,5:7:15.05:181,15,0
1    57158293    rs7419053    G    A    155.29    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=57.05;MQ0=0;MQRankSum=0.742;QD=19.41;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371244    GT:AD:DP:GQ:PL    0/1:2,6:8:24.17:185,0,24
1    57170229    rs932447    T    C    160.39    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=1.339;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8939;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.97;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371244    GT:AD:DP:GQ:PL    0/1:15,7:23:99:190,0,552
1    57185818    rs857141    A    G    1302.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371244    GT:AD:DP:GQ:PL    1/1:0,37:38:99:1335,99,0
1    57189499    rs857140    C    T    120.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=20.06;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371240    GT:AD:DP:GQ:PL    0/1:2,4:6:52.42:150,0,52
1    57192353    rs71772656    TAAA    T    234.70    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=3.096;DB;DP=22;FS=0.0;HRun=5;HaplotypeScore=82.5016;IndelType=D;MQ=58.02;MQ0=0;MQRankSum=0.56;QD=10.67;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343433    GT:AD:DP:GQ:PL    0/1:15,7:22:99:274,0,877
1    57219539    rs72668350    C    A    1029.43    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.165;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.4;MQ0=0;MQRankSum=0.141;QD=14.71;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=K400N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_57219512_57219608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf168;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343433    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1059,0,1034
1    57219631    rs11404975    G    GA    420.57    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=32;FS=0.0;HRun=7;HaplotypeScore=86.2455;IndelType=I;MQ=60.34;MQ0=0;MQRankSum=1.29;QD=13.14;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343433    GT:AD:DP:GQ:PL    0/1:17,15:32:99:460,0,293
1    57224460    rs857103    G    C    488.84    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.434;DB;DP=23;Dels=0.0;FS=2.539;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.301;QD=21.25;ReadPosRankSum=0.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343433    GT:AD:DP:GQ:PL    0/1:7,16:23:99:519,0,225
1    57257668    rs2298129    C    A    1213.74    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=90;Dels=0.0;FS=2.908;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.73;QD=13.49;ReadPosRankSum=-2.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343433    GT:AD:DP:GQ:PL    0/1:46,44:90:99:1244,0,1488
1    57340860    rs2269118    G    A    110.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.49;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361249    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:141,0,67
1    57349407    rs6694643    A    T    215.01    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=14.33;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361249    GT:AD:DP:GQ:PL    0/1:8,7:15:99:245,0,270
1    57349464    rs6697228    T    C    85.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=14.23;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361249    GT:AD:DP:GQ:PL    0/1:2,4:6:58.96:115,0,59
1    57372591    rs619545    C    T    180.95    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=13.92;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361249    GT:AD:DP:GQ:PL    0/1:7,6:13:99:211,0,205
1    57373500    rs10562652    GAGA    G    332.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=34.6909;IndelType=D;MQ=56.88;MQ0=0;QD=41.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361249    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:374,24,0
1    57378413    rs623077    T    C    81.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361249    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
1    57395251    rs605648    T    C    1251.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465658    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1285,93,0
1    57395294    rs41285940    G    A    428.27    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.571;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=20.39;ReadPosRankSum=1.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465658    GT:AD:DP:GQ:PL    0/1:8,13:21:99:458,0,225
1    57406392    rs6669836    T    C    555.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371237    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:588,45,0
1    57409327    rs41286846    T    C    1033.68    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.577;QD=13.08;ReadPosRankSum=0.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371237    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1064,0,1124
1    57409329    rs72670361    A    G    1074.17    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.686;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=13.6;ReadPosRankSum=-0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371237    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1104,0,1189
1    57422218    rs7541538    T    C    620.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468990    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:654,48,0
1    57422298    rs145693778    G    T    675.49    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.206;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5253;MQ=60.0;MQ0=0;MQRankSum=0.584;QD=10.23;ReadPosRankSum=0.243;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468990    GT:AD:DP:GQ:PL    0/1:40,26:66:99:705,0,1388
1    57422484    rs1013579    C    T    7050.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=206;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7128;MQ=59.78;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=G117R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_57422442_57422583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371237    GT:AD:DP:GQ:PL    1/1:0,206:206:99:7050,524,0
1    57425888    rs139781264    AG    A    335.30    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=3.435;DB;DP=25;FS=3.203;HRun=3;HaplotypeScore=63.9316;IndelType=D;MQ=60.43;MQ0=0;MQRankSum=1.703;QD=13.41;ReadPosRankSum=-1.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371237    GT:AD:DP:GQ:PL    0/1:12,13:25:99:374,0,447
1    57536582    rs17418461    T    C    468.53    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.076;QD=12.33;ReadPosRankSum=0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489267    GT:AD:DP:GQ:PL    0/1:21,17:38:99:499,0,691
1    58521640    rs34463571    G    A    352.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.045;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.79;MQ0=0;MQRankSum=0.039;QD=17.65;ReadPosRankSum=-1.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371234    GT:AD:DP:GQ:PL    0/1:8,12:20:99:383,0,264
1    58521721    rs141842011    CT    C    287.51    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.569;DB;DP=58;FS=0.0;HRun=16;HaplotypeScore=301.2514;IndelType=D;MQ=46.37;MQ0=0;MQRankSum=1.183;QD=4.56;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371234    GT:AD:DP:GQ:PL    0/1:28,29:58:99:327,0,286
1    58939335    rs338232    C    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358603    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    58939502    rs12118488    C    A    730.14    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.139;DB;DP=44;Dels=0.0;FS=2.02;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=16.59;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358603    GT:AD:DP:GQ:PL    0/1:18,26:44:99:760,0,578
1    58946539    rs67922378    C    CT    193.59    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.296;DB;DP=18;FS=0.0;HRun=10;HaplotypeScore=45.2875;IndelType=I;MQ=60.53;MQ0=0;MQRankSum=-0.177;QD=10.76;ReadPosRankSum=-2.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476933    GT:AD:DP:GQ:PL    0/1:9,9:18:99:233,0,168
1    58946861    rs12144759    T    G    319.50    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=17.75;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358603    GT:AD:DP:GQ:PL    0/1:7,11:18:99:349,0,222
1    58946947    rs338224    T    C    44.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358603    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
1    58971831    rs3087585    G    A    410.23    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=35;Dels=0.0;FS=1.451;HRun=2;HaplotypeScore=0.6651;MQ=59.47;MQ0=0;MQRankSum=-0.48;QD=11.72;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=F422;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_58971732_58971881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358603    GT:AD:DP:GQ:PL    0/1:19,16:35:99:440,0,600
1    58971940    rs11207245    C    A    74.21    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=11;Dels=0.0;FS=3.424;HRun=5;HaplotypeScore=0.9469;MQ=57.87;MQ0=0;MQRankSum=0.466;QD=6.75;ReadPosRankSum=-1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358603    GT:AD:DP:GQ:PL    0/1:6,5:11:99:104,0,148
1    58996203    rs2271004    T    C    246.29    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=11.19;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419242    GT:AD:DP:GQ:PL    0/1:11,10:22:99:276,0,314
1    59004979    rs902925    C    T    958    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_59004467_59004982;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358603    GT:AD:DP:GQ:PL    1/1:0,27:27:75.21:991,75,0
1    59041655    rs41313363    T    C    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACSTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    59042001    rs12121124    G    A    126.25    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=9.02;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=G276;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_59041099_59043166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACSTD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371225    GT:AD:DP:GQ:PL    0/1:9,5:14:99:156,0,289
1    59125515    rs12737926    C    T    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401044    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    59125894    rs12092264    A    G    388.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:421,30,0
1    59125899    rs12082192    G    A    460.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:493,36,0
1    59127024    rs4912364    T    G    1033.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,27:27:81.25:1066,81,0
1    59131311    rs232790    G    T    1166.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,40:40:90.26:1200,90,0
1    59131481    rs232791    C    T    159.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:193,15,0
1    59133339    rs6673162    C    T    142.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
1    59134586    rs11207284    G    C    175.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
1    59134607    rs57822474    C    CAG    384.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=30.6263;IndelType=I;MQ=61.53;MQ0=0;QD=54.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:426,21,0
1    59137783    rs539141    A    G    203.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481973    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
1    59139223    rs2064370    C    G    770.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481973    GT:AD:DP:GQ:PL    1/1:0,26:26:63.17:803,63,0
1    59141365    rs17118097    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481973    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    59142713    rs579110    T    C    3186.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.05;MQ0=0;QD=29.5;SNPEFF_AMINO_ACID_CHANGE=P425;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_59142598_59142728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3219,256,0
1    59147420    rs11207292    G    A    1343.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466774    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1377,99,0
1    59147926    rs12139511    T    C    3751.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.291;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=36.42;ReadPosRankSum=1.019;SNPEFF_AMINO_ACID_CHANGE=T264A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_59147457_59148217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:1,101:103:99:3752,247,0
1    59148136    rs141778225    T    C    603.85    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=57;Dels=0.0;FS=7.094;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.438;QD=10.59;ReadPosRankSum=-0.008;SNPEFF_AMINO_ACID_CHANGE=K194E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_59147457_59148217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    0/1:36,21:57:99:634,0,1250
1    59150941    rs2206764    G    A    671.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=24.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483003    GT:AD:DP:GQ:PL    1/1:0,27:27:63.17:705,63,0
1    59150997    rs34253410    TA    T    138.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=13;HaplotypeScore=115.6644;IndelType=D;MQ=50.96;MQ0=0;QD=12.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483003    GT:AD:DP:GQ:PL    1/1:2,8:11:25.86:181,26,0
1    59156155    rs12076049    C    T    817.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489282    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:851,63,0
1    59158632    rs12097333    T    C    2772.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5193;MQ=59.51;MQ0=0;QD=32.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2806,220,0
1    59160724    rs149815102    TA    T    46.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=13;HaplotypeScore=33.329;IndelType=D;MQ=60.0;MQ0=0;QD=7.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472487    GT:AD:DP:GQ:PL    1/1:1,5:6:11.92:88,12,0
1    59165838    rs11207297    T    G    170.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.41;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466774    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
1    59248813    rs2760499    G    C    680.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_59246465_59249785;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371222    GT:AD:DP:GQ:PL    1/1:0,22:22:57.14:714,57,0
1    59787350    rs835409    T    G    675.38    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.314;DB;DP=59;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=1.9497;MQ=59.61;MQ0=0;MQRankSum=0.394;QD=11.45;ReadPosRankSum=-0.893;SNPEFF_AMINO_ACID_CHANGE=N43K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_59787208_59787422;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGGY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303721    GT:AD:DP:GQ:PL    0/1:32,27:59:99:705,0,799
1    59844471    rs835435    G    A    904.11    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.57;DB;DP=59;Dels=0.0;FS=5.399;HRun=0;HaplotypeScore=1.9318;MQ=60.0;MQ0=0;MQRankSum=0.44;QD=15.32;ReadPosRankSum=0.895;SNPEFF_AMINO_ACID_CHANGE=P172;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_59844421_59844509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGGY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303721    GT:AD:DP:GQ:PL    0/1:25,34:59:99:934,0,707
1    60223460    rs590704    A    G    68.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.56;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGGY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303721    GT:AD:DP:GQ:PL    0/1:5,3:8:98.44:98,0,183
1    60228310    rs10626387    T    TTC    480.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=21.0447;IndelType=I;MQ=51.18;MQ0=0;QD=53.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGGY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472783    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:522,27,0
1    60299820    rs618716    C    G    557.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371208    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:590,48,0
1    60326045    .    C    G    399.16    HaplotypeScoreFilter13    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.868;DP=97;Dels=0.0;FS=43.449;HRun=1;HaplotypeScore=26.9628;MQ=53.48;MQ0=0;MQRankSum=-1.15;QD=4.12;ReadPosRankSum=2.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371208    GT:AD:DP:GQ:PL    0/1:42,55:97:99:429,0,602
1    60377133    rs1570693    T    G    134.04    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=19.15;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2J2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371204    GT:AD:DP:GQ:PL    0/1:2,5:7:62.40:164,0,62
1    60381437    rs11572245    C    G    37.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.406;QD=6.2;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2J2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371204    GT:AD:DP:GQ:PL    0/1:3,3:6:67.19:67,0,101
1    60392271    rs11572191    G    A    817.72    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.362;DB;DP=42;Dels=0.0;FS=2.913;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.391;QD=19.47;ReadPosRankSum=0.184;SNPEFF_AMINO_ACID_CHANGE=L50;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_60392209_60392462;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2J2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371204    GT:AD:DP:GQ:PL    0/1:15,27:42:99:848,0,417
1    60466814    rs626251    T    C    336.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.91;MQ0=0;QD=24.01;SNPEFF_AMINO_ACID_CHANGE=K174E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_60466749_60466828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450089    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:369,30,0
1    60466840    rs67702939    TA    T    44.81    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=11;FS=0.0;HRun=13;HaplotypeScore=72.9895;IndelType=D;MQ=59.88;MQ0=0;MQRankSum=0.322;QD=4.07;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    0/1:5,6:11:63.55:84,0,64
1    60474375    rs17119974    C    T    1022.85    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.427;DB;DP=129;Dels=0.0;FS=5.996;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-0.959;QD=7.93;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=T13;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_60474320_60474413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395552    GT:AD:DP:GQ:PL    0/1:89,40:129:99:1053,0,2687
1    60475930    rs616949    C    G    385.71    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.22;QD=14.29;ReadPosRankSum=2.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    0/1:15,12:27:99:416,0,520
1    60476321    rs17119983    G    T    75.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=9.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    0/1:4,4:8:99:105,0,112
1    60503594    rs72669614    C    T    461.54    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.955;DB;DP=29;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.112;QD=15.92;ReadPosRankSum=-2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    0/1:11,18:29:99:492,0,376
1    60503883    rs11351602    TA    T    115.09    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=3.17;DB;DP=25;FS=0.0;HRun=7;HaplotypeScore=58.743;IndelType=D;MQ=59.07;MQ0=0;MQRankSum=0.792;QD=4.6;ReadPosRankSum=0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    0/1:18,7:25:99:154,0,429
1    60505578    rs680390    A    G    2478.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7663;MQ=59.46;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2511,202,0
1    60505783    rs12737449    G    C    1471.98    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.963;DB;DP=89;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.343;QD=16.54;ReadPosRankSum=0.318;SNPEFF_AMINO_ACID_CHANGE=L185V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_60505589_60505852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    0/1:39,50:89:99:1502,0,1188
1    60505965    rs12723322    T    G    177.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=17.72;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    0/1:4,6:10:99:207,0,131
1    60506744    rs10493277    G    A    729.14    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.584;DB;DP=47;Dels=0.0;FS=2.652;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.294;QD=15.51;ReadPosRankSum=-0.692;SNPEFF_AMINO_ACID_CHANGE=S134;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_60506663_60506803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371201    GT:AD:DP:GQ:PL    0/1:20,27:47:99:759,0,533
1    61330929    rs112380759    A    G    92.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.3;QD=13.22;ReadPosRankSum=0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371191    GT:AD:DP:GQ:PL    0/1:3,4:7:98.81:123,0,99
1    61331160    rs72046482    C    CTT    240.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DB;DP=27;FS=0.0;HRun=21;HaplotypeScore=232.7865;IndelType=I;MQ=49.04;MQ0=0;MQRankSum=-0.81;QD=8.91;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371191    GT:AD:DP:GQ:PL    1/1:14,11:27:19.44:283,19,0
1    61818381    rs11587835    C    T    348.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371184    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:381,30,0
1    61892301    rs5774558    T    TG    673.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=57.124;IndelType=I;MQ=59.49;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371184    GT:AD:DP:GQ:PL    1/1:1,16:18:48.16:715,48,0
1    62160542    rs1151765    A    G    301.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.4;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=20.13;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294613    GT:AD:DP:GQ:PL    0/1:6,9:15:99:332,0,140
1    62189324    .    A    G    189.66    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.439;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.323;QD=9.03;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294613    GT:AD:DP:GQ:PL    0/1:11,10:21:99:220,0,360
1    62232031    rs1286835    C    T    1076.45    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=77;Dels=0.0;FS=9.492;HRun=1;HaplotypeScore=1.7621;MQ=59.46;MQ0=0;MQRankSum=1.081;QD=13.98;ReadPosRankSum=-1.265;SNPEFF_AMINO_ACID_CHANGE=I90;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62231951_62232145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:38,39:77:99:1106,0,1193
1    62232173    rs1290444    T    C    724.18    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.997;DB;DP=49;Dels=0.0;FS=1.502;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=14.78;ReadPosRankSum=-2.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:18,31:49:99:754,0,568
1    62253483    rs3762321    G    A    781.54    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.891;DB;DP=54;Dels=0.0;FS=10.369;HRun=0;HaplotypeScore=1.8455;MQ=59.14;MQ0=0;MQRankSum=-0.468;QD=14.47;ReadPosRankSum=0.069;SNPEFF_AMINO_ACID_CHANGE=G303R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62253426_62253644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:29,25:54:99:812,0,888
1    62253768    rs35694329    G    GA    54.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=47.7309;IndelType=I;MQ=51.77;MQ0=0;QD=9.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:1,5:6:9.02:96,9,0
1    62257036    rs1286823    A    C    629.78    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=0.141;DB;DP=38;Dels=0.0;FS=1.4;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.423;QD=16.57;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=E362A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62257020_62257119;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:15,23:38:99:660,0,377
1    62257223    rs3790577    A    G    153.56    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=19.19;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:3,5:8:99:184,0,102
1    62261168    rs7516332    A    G    483.86    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=45;Dels=0.0;FS=1.141;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=0.134;QD=10.75;ReadPosRankSum=-0.96;SNPEFF_AMINO_ACID_CHANGE=I400V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62261139_62261230;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:21,24:45:99:514,0,650
1    62267625    rs11207841    G    A    76.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=19.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
1    62267656    rs11803807    C    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    62274312    rs3790576    G    A    151.58    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=18.95;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:2,5:8:61.92:182,0,62
1    62330080    rs2799627    T    G    1017.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=I870M;SNPEFF_CODON_CHANGE=atT/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62329910_62330305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1051,78,0
1    62340726    rs12096192    G    A    170.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
1    62340855    rs12753462    G    C    944.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,24:24:72.21:978,72,0
1    62341157    rs4598521    T    C    681.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:714,60,0
1    62350123    rs72229771    GTTTTT    G    313.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.917;DB;DP=29;FS=0.0;HRun=22;HaplotypeScore=260.9934;IndelType=D;MQ=44.97;MQ0=0;MQRankSum=0.639;QD=10.82;ReadPosRankSum=0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:10,11:29:25.61:356,26,0
1    62365217    rs1412622    C    T    6237.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=196;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.53;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,196:196:99:6237,494,0
1    62365428    rs5774578    G    GA    1549.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=2;HaplotypeScore=99.2093;IndelType=I;MQ=60.24;MQ0=0;QD=38.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:3,37:40:99:1592,111,0
1    62366878    rs2499002    T    G    224.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:257,21,0
1    62374267    rs2151122    T    C    252.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
1    62380124    rs4915789    A    G    47.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=5.97;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:5,3:8:77.78:78,0,181
1    62380195    rs2482858    A    G    943.08    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.365;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.007;QD=14.97;ReadPosRankSum=0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:30,33:63:99:973,0,1043
1    62380223    rs11585422    G    T    1266.08    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=6.495;DB;DP=84;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=15.07;ReadPosRankSum=0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:38,46:84:99:1296,0,999
1    62380270    rs1134766    C    T    4624.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=59.82;MQ0=0;QD=35.3;SNPEFF_AMINO_ACID_CHANGE=N1168;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62380259_62380336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316485    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4625,337,0
1    62380298    rs1056513    G    A    5439.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DB;DP=155;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4348;MQ=59.85;MQ0=0;MQRankSum=0.577;QD=35.09;ReadPosRankSum=0.057;SNPEFF_AMINO_ACID_CHANGE=G1178S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62380259_62380336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316485    GT:AD:DP:GQ:PL    1/1:1,154:155:99:5439,397,0
1    62393394    rs2251182    A    G    1043.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    1/1:0,40:40:84.25:1076,84,0
1    62456014    rs1134767    G    A    237.83    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.028;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.33;QD=9.15;ReadPosRankSum=-0.651;SNPEFF_AMINO_ACID_CHANGE=R1282H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62455840_62456036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316485    GT:AD:DP:GQ:PL    0/1:16,9:26:99:268,0,517
1    62483599    rs34726576    G    A    1109.25    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.211;DB;DP=73;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6208;MQ=58.08;MQ0=0;MQRankSum=-0.262;QD=15.2;ReadPosRankSum=-0.117;SNPEFF_AMINO_ACID_CHANGE=K1313;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62483528_62483619;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316485    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1139,0,975
1    62483623    rs41313250    A    G    687.92    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.83;MQ0=0;MQRankSum=1.683;QD=12.74;ReadPosRankSum=-1.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:29,25:54:99:718,0,1026
1    62516683    rs2498982    G    C    437.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.198;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.166;QD=14.59;ReadPosRankSum=1.286;SNPEFF_AMINO_ACID_CHANGE=V1360L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62516638_62516730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316485    GT:AD:DP:GQ:PL    0/1:15,15:30:99:468,0,418
1    62545085    rs17379217    C    T    669.92    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.651;DB;DP=65;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.493;QD=10.31;ReadPosRankSum=1.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:35,30:65:99:700,0,1160
1    62579672    rs1475564    A    C    79.71    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=11.39;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:3,4:7:99:110,0,100
1    62579758    rs41289428    G    A    189.44    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=18.94;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=E144K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62579725_62579995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545929    GT:AD:DP:GQ:PL    0/1:3,7:10:49.07:219,0,49
1    62579823    rs1475563    G    A    194.35    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=21.59;ReadPosRankSum=1.179;SNPEFF_AMINO_ACID_CHANGE=E1492;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62579725_62579918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395513    GT:AD:DP:GQ:PL    0/1:2,7:9:18.94:224,0,19
1    62587014    rs71582664    T    TA    289.07    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.792;DB;DP=48;FS=3.01;HRun=12;HaplotypeScore=153.8365;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=1.187;QD=6.02;ReadPosRankSum=-1.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465798    GT:AD:DP:GQ:PL    0/1:33,15:48:99:328,0,352
1    62593893    rs2481664    T    C    82.18    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.244;QD=6.85;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255202    GT:AD:DP:GQ:PL    0/1:7,5:12:99:112,0,255
1    62594593    rs2476194    C    T    655.98    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.859;DB;DP=46;Dels=0.0;FS=2.926;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.012;QD=14.26;ReadPosRankSum=0.304;SNPEFF_AMINO_ACID_CHANGE=N1749;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62594513_62594617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371158    GT:AD:DP:GQ:PL    0/1:24,22:46:99:686,0,645
1    62594677    rs2481665    T    C    305.43    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.664;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.908;QD=12.73;ReadPosRankSum=-0.029;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472512    GT:AD:DP:GQ:PL    0/1:14,10:24:99:335,0,517
1    62672546    rs2457829    G    A    399.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.113;DB;DP=30;Dels=0.0;FS=4.821;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=13.31;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=G82;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62672191_62673308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L1TD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000498273    GT:AD:DP:GQ:PL    0/1:15,15:30:99:429,0,415
1    62704134    rs41289438    A    G    103.24    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.75;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317477    GT:AD:DP:GQ:PL    0/1:3,4:7:99:133,0,102
1    62713224    rs2941679    C    G    1187.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=37.12;SNPEFF_AMINO_ACID_CHANGE=V291L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62713144_62713344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371150    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1221,90,0
1    62713246    rs10889315    G    A    1230.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.59;MQ0=0;QD=37.3;SNPEFF_AMINO_ACID_CHANGE=H283;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62713144_62713344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371150    GT:AD:DP:GQ:PL    1/1:0,33:33:93.31:1264,93,0
1    62713469    rs10789108    T    C    186.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317477    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:219,18,0
1    62728784    rs2666472    A    G    90.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.041;QD=6.03;ReadPosRankSum=1.531;SNPEFF_AMINO_ACID_CHANGE=V196A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62728764_62728983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371150    GT:AD:DP:GQ:PL    0/1:10,5:15:99:120,0,328
1    62728838    rs2258470    T    C    49.84    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=14;Dels=0.0;FS=5.88;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.778;QD=3.56;ReadPosRankSum=-2.024;SNPEFF_AMINO_ACID_CHANGE=H178R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62728764_62728983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371150    GT:AD:DP:GQ:PL    0/1:11,3:14:79.83:80,0,402
1    62728918    rs2262110    G    A    166.26    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=15;Dels=0.0;FS=2.081;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.562;QD=11.08;ReadPosRankSum=0.521;SNPEFF_AMINO_ACID_CHANGE=P151;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62728764_62728983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371150    GT:AD:DP:GQ:PL    0/1:8,7:15:99:196,0,247
1    62729015    rs2262106    G    A    85.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=10.68;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354381    GT:AD:DP:GQ:PL    0/1:4,4:8:99:115,0,138
1    62733939    rs11207950    G    A    136.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=-0.391;QD=6.5;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354381    GT:AD:DP:GQ:PL    0/1:12,9:21:99:167,0,381
1    62737372    rs4609464    A    C    36.41    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.386;QD=3.64;ReadPosRankSum=-2.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354381    GT:AD:DP:GQ:PL    0/1:7,3:10:66.40:66,0,255
1    62738904    rs7516290    T    C    140.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.656;QD=8.28;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=P624;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62738876_62740759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371153    GT:AD:DP:GQ:PL    0/1:6,9:17:99:171,0,116
1    62739198    rs17855078    G    A    638.62    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=41;Dels=0.0;FS=1.333;HRun=0;HaplotypeScore=0.8941;MQ=59.44;MQ0=0;MQRankSum=1.495;QD=15.58;ReadPosRankSum=0.569;SNPEFF_AMINO_ACID_CHANGE=S526;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62738876_62740759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371153    GT:AD:DP:GQ:PL    0/1:17,24:41:99:669,0,460
1    62740065    rs12127930    A    G    228.33    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=32;Dels=0.0;FS=1.489;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.767;QD=7.14;ReadPosRankSum=-0.269;SNPEFF_AMINO_ACID_CHANGE=G237;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62738876_62740759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371153    GT:AD:DP:GQ:PL    0/1:19,13:32:99:258,0,643
1    62740446    rs2666506    T    C    623.35    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.643;QD=15.98;ReadPosRankSum=-1.195;SNPEFF_AMINO_ACID_CHANGE=P110;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62738876_62740759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371153    GT:AD:DP:GQ:PL    0/1:16,23:39:99:653,0,436
1    62740449    rs2666507    T    C    649.41    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.06;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.613;QD=16.65;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=S109;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62738876_62740759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371153    GT:AD:DP:GQ:PL    0/1:16,23:39:99:679,0,417
1    62740930    rs2666508    A    G    596.56    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.055;DB;DP=57;Dels=0.0;FS=2.809;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.571;QD=10.47;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354381    GT:AD:DP:GQ:PL    0/1:33,24:57:99:627,0,1059
1    62741049    rs11207955    C    A    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.64;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354381    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,130
1    62912919    rs10158897    C    T    140.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.741;QD=14.01;ReadPosRankSum=-1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452143    GT:AD:DP:GQ:PL    0/1:4,6:10:99:170,0,141
1    62939634    rs1168007    C    T    712.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467758    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:746,54,0
1    62941168    rs11330816    GA    G    59.24    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;FS=0.0;HRun=12;HaplotypeScore=17.763;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=8.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:2,5:7:12.52:98,0,13
1    62943264    rs1168008    C    T    1154.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4942;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    1/1:0,31:31:87.29:1188,87,0
1    62953183    rs1168025    C    T    1177.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479983    GT:AD:DP:GQ:PL    1/1:0,31:31:90.28:1211,90,0
1    62954372    rs112517122    G    GA    150.97    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.861;DB;DP=22;FS=0.0;HRun=10;HaplotypeScore=63.0013;IndelType=I;MQ=58.95;MQ0=0;MQRankSum=0.109;QD=6.86;ReadPosRankSum=1.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479983    GT:AD:DP:GQ:PL    0/1:14,7:22:99:190,0,257
1    62960101    rs10889335    A    G    613.22    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=36;Dels=0.0;FS=1.301;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=17.03;ReadPosRankSum=-1.155;SNPEFF_AMINO_ACID_CHANGE=L1657;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_62959946_62960138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340370    GT:AD:DP:GQ:PL    0/1:15,21:36:99:643,0,457
1    62960250    rs1168041    T    C    105.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=-1.38;QD=17.66;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:2,4:6:64.35:136,0,64
1    62961928    rs1168038    T    C    617.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:650,48,0
1    62970184    rs1168027    T    C    146.25    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.825;QD=13.3;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:5,6:11:99:176,0,173
1    62973795    rs1184865    A    G    158.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=13.23;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:6,6:12:99:189,0,211
1    62976472    rs1168043    T    G    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
1    63001120    rs1168018    A    C    444.53    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.021;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.06;QD=14.82;ReadPosRankSum=-1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:14,16:30:99:475,0,460
1    63027411    rs5774610    AG    A    2091.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=1;HaplotypeScore=125.9285;IndelType=D;MQ=59.74;MQ0=0;QD=41.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    1/1:0,51:51:99:2134,154,0
1    63044464    rs11207993    C    T    537.28    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.721;DB;DP=57;Dels=0.0;FS=6.203;HRun=1;HaplotypeScore=0.0;MQ=53.27;MQ0=0;MQRankSum=1.27;QD=9.43;ReadPosRankSum=-0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:34,23:57:99:567,0,924
1    63050598    rs3850634    T    G    374.27    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=3.128;DB;DP=25;Dels=0.0;FS=3.188;HRun=2;HaplotypeScore=0.9983;MQ=58.13;MQ0=0;MQRankSum=0.571;QD=14.97;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:13,12:25:99:404,0,408
1    63070537    rs67461605    AGTTAATGTG    A    992.71    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=4.48;DB;DP=29;FS=3.174;HRun=0;HaplotypeScore=244.7881;IndelType=D;MQ=51.15;MQ0=0;MQRankSum=-2.596;QD=34.23;ReadPosRankSum=0.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482591    GT:AD:DP:GQ:PL    0/1:15,14:29:99:1032,0,1650
1    63085483    rs112353234    T    TA    163.80    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.78;DB;DP=21;FS=0.0;HRun=10;HaplotypeScore=77.8951;IndelType=I;MQ=59.42;MQ0=0;MQRankSum=-0.337;QD=7.8;ReadPosRankSum=0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:12,9:21:99:203,0,170
1    63090858    rs6587980    C    T    716.97    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.202;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.046;QD=19.38;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:15,22:37:99:747,0,521
1    63099023    rs10889352    T    C    225.59    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.507;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=1.216;QD=11.28;ReadPosRankSum=0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:11,9:20:99:256,0,364
1    63113511    rs746735    C    A    1102.31    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.825;DB;DP=67;Dels=0.0;FS=9.435;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-1.072;QD=16.45;ReadPosRankSum=1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:34,33:67:99:1132,0,1126
1    63113689    rs1168088    T    C    979.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    1/1:0,26:26:78.25:1012,78,0
1    63113719    rs1168089    T    C    680.45    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DB;DP=34;Dels=0.0;FS=7.899;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=20.01;ReadPosRankSum=1.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:14,20:34:99:710,0,408
1    63119256    rs12117388    T    C    192.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=21.41;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251157    GT:AD:DP:GQ:PL    0/1:3,6:9:91.66:223,0,92
1    63836513    rs34542411    C    G    236.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_63836441_63836730;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263440    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:269,21,0
1    63872032    rs35383149    T    C    789.25    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.61;MQ0=0;MQRankSum=0.463;QD=13.38;ReadPosRankSum=1.101;SNPEFF_AMINO_ACID_CHANGE=Y131H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_63871988_63872070;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263440    GT:AD:DP:GQ:PL    0/1:28,31:59:99:819,0,697
1    63872600    rs12755065    T    C    201.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487136    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
1    63872871    rs6588028    A    G    674.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.71;MQ0=0;QD=37.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487136    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:708,51,0
1    63881552    rs4630153    C    T    1183.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=S304F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_63881544_63881628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371108    GT:AD:DP:GQ:PL    1/1:0,39:39:90.30:1217,90,0
1    63885222    rs4550089    T    G    863.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263440    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:897,72,0
1    63912546    rs12760364    G    T    657.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=19.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ITGB3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283568    GT:AD:DP:GQ:PL    1/1:0,33:33:57.17:691,57,0
1    63991140    rs9436686    T    C    893    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371088    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:926,69,0
1    63991490    rs35446626    G    A    204.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371088    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
1    63997633    rs9804078    A    T    1329.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.04;QD=30.92;ReadPosRankSum=0.282;SNPEFF_AMINO_ACID_CHANGE=S110;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_63997491_63997702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371088    GT:AD:DP:GQ:PL    1/1:1,42:43:71.35:1362,71,0
1    63999826    rs6693255    C    T    2636.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=T248I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_63999766_63999887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371088    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2670,196,0
1    63999868    rs6657480    T    C    1868.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=58.8;MQ0=0;QD=32.21;SNPEFF_AMINO_ACID_CHANGE=M262T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_63999766_63999887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371088    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1901,153,0
1    63999891    rs6657559    T    C    1754.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480886    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1787,135,0
1    64015217    rs217485    G    A    2144.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.029;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.94;MQ0=1;MQRankSum=1.083;QD=32.49;ReadPosRankSum=1.678;SNPEFF_AMINO_ACID_CHANGE=V42I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_64015160_64015405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLEU2L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340052    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2177,168,0
1    64021096    rs2273367    G    A    1785.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.053;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.56;MQ0=0;MQRankSum=-1.189;QD=33.68;ReadPosRankSum=-1.257;SNPEFF_AMINO_ACID_CHANGE=R375K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_64021029_64021186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371088    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1818,105,0
1    64022581    rs12402761    C    T    38.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.52;MQ0=0;QD=7.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371088    GT:AD:DP:GQ:PL    1/1:0,3:5:6.02:70,6,0
1    64022708    rs35668099    C    CA    307.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.405;DB;DP=26;FS=0.0;HRun=16;HaplotypeScore=236.7929;IndelType=I;MQ=53.64;MQ0=0;MQRankSum=0.298;QD=11.81;ReadPosRankSum=0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371088    GT:AD:DP:GQ:PL    1/1:13,13:26:1.18:345,1,0
1    64036838    rs4915903    G    A    623.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=38.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460678    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:656,48,0
1    64038107    rs6588050    G    T    1023.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460678    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1056,78,0
1    64089017    rs74603309    C    G    478.23    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.09;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=11.96;ReadPosRankSum=-1.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371084    GT:AD:DP:GQ:PL    0/1:21,19:40:99:508,0,684
1    64095042    rs855313    G    T    471.53    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=5.167;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.117;QD=10.97;ReadPosRankSum=-1.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371083    GT:AD:DP:GQ:PL    0/1:27,16:43:99:502,0,808
1    64095111    rs855314    A    G    927.71    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.042;DB;DP=103;Dels=0.0;FS=1.738;HRun=0;HaplotypeScore=0.5784;MQ=59.78;MQ0=0;MQRankSum=-1.218;QD=8.92;ReadPosRankSum=-0.891;SNPEFF_AMINO_ACID_CHANGE=I106V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_64095096_64095258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371083    GT:AD:DP:GQ:PL    0/1:65,38:103:99:958,0,1981
1    64095862    rs72681118    G    A    87.64    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.524;QD=4.38;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371083    GT:AD:DP:GQ:PL    0/1:15,5:20:99:118,0,526
1    64097432    rs1126728    C    T    1246.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.478;DB;DP=82;Dels=0.0;FS=1.814;HRun=0;HaplotypeScore=1.9995;MQ=60.0;MQ0=0;MQRankSum=0.325;QD=15.2;ReadPosRankSum=0.77;SNPEFF_AMINO_ACID_CHANGE=R197C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_64097328_64097453;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538673    GT:AD:DP:GQ:PL    0/1:41,41:82:99:1276,0,1188
1    64100478    rs6588052    A    T    1268.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.912;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7885;MQ=60.0;MQ0=0;MQRankSum=0.274;QD=32.53;ReadPosRankSum=1.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371083    GT:AD:DP:GQ:PL    1/1:1,37:39:64.69:1302,65,0
1    64100884    rs2301057    A    G    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371083    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    64102114    rs2269248    A    G    1075.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;DB;DP=37;Dels=0.0;FS=5.563;HRun=0;HaplotypeScore=6.9096;MQ=58.35;MQ0=0;MQRankSum=1.54;QD=29.07;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371083    GT:AD:DP:GQ:PL    1/1:1,36:37:84.26:1109,84,0
1    64104099    rs855309    A    G    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371083    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    64474804    rs285399    C    T    350.12    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.272;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.01;MQ0=0;MQRankSum=-1.096;QD=18.43;ReadPosRankSum=0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371079    GT:AD:DP:GQ:PL    0/1:6,13:19:99:380,0,172
1    64515379    rs1772626    C    T    2862.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_AMINO_ACID_CHANGE=L60;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_64515363_64515650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371079    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2895,214,0
1    64608329    rs2762833    G    T    1479.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.94;SNPEFF_AMINO_ACID_CHANGE=A390;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_64608088_64608333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371079    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1513,114,0
1    64624612    rs4362024    G    A    1033.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371079    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1066,78,0
1    64669567    rs2806529    A    T    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_64669490_64669799;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2U;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371076    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,106
1    64680324    rs7533812    G    T    76.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.14;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2U;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371076    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:107,0,31
1    64680682    rs825174    C    G    140.78    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=10.83;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2U;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371076    GT:AD:DP:GQ:PL    0/1:8,5:13:99:171,0,272
1    64680775    rs12081070    G    A    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.61;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2U;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371076    GT:AD:DP:GQ:PL    0/1:2,3:5:52.52:108,0,53
1    64707243    rs825189    G    C    66.43    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.64;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2U;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371076    GT:AD:DP:GQ:PL    0/1:7,3:10:96.43:96,0,255
1    64726414    rs705542    A    C    740.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.45;DB;DP=50;Dels=0.0;FS=2.152;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.55;QD=14.8;ReadPosRankSum=0.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2U;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371077    GT:AD:DP:GQ:PL    0/1:25,25:50:99:770,0,845
1    64732581    rs705548    T    A    30.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.11;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2U;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371077    GT:AD:DP:GQ:PL    0/1:3,2:5:60.54:61,0,110
1    65003778    rs305555    T    C    631.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290039    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:665,48,0
1    65016349    rs2164571    A    T    1165.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=27.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290039    GT:AD:DP:GQ:PL    1/1:0,42:42:87.29:1198,87,0
1    65068638    rs6665437    T    C    513.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290039    GT:AD:DP:GQ:PL    1/1:0,18:18:48.10:547,48,0
1    65098148    rs893080    T    C    760.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290039    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:793,60,0
1    65099978    rs2118102    G    A    684.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.96;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290039    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:717,54,0
1    65107372    rs6664905    C    T    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290039    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    65113568    rs6588100    T    C    669.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.988;MQ=59.25;MQ0=0;QD=26.78;SNPEFF_AMINO_ACID_CHANGE=M363T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_65113484_65113717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290039    GT:AD:DP:GQ:PL    1/1:0,25:25:60.13:703,60,0
1    65301611    rs2780815    T    G    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481702    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,109
1    65301669    rs2254002    C    A    147.63    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.529;QD=12.3;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481702    GT:AD:DP:GQ:PL    0/1:5,7:12:99:178,0,180
1    65305102    rs10539130    TCA    T    203.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=16.6146;IndelType=D;MQ=60.0;MQ0=0;QD=40.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465376    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:245,15,0
1    65307409    rs310247    G    A    70.69    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=8.84;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471473    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,166
1    65310489    rs2230588    T    C    414.22    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=30;Dels=0.0;FS=8.916;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.069;QD=13.81;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=P733;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_65310437_65310572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342505    GT:AD:DP:GQ:PL    0/1:16,14:30:99:444,0,468
1    65316675    rs310216    G    A    103.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=14.78;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342505    GT:AD:DP:GQ:PL    0/1:2,5:7:65.24:133,0,65
1    65321388    rs310229    G    A    143.72    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.749;QD=13.07;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494904    GT:AD:DP:GQ:PL    0/1:6,5:11:99:174,0,180
1    65323142    rs310227    C    T    31.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494904    GT:AD:DP:GQ:PL    0/1:2,2:4:61.63:62,0,69
1    65325970    rs310224    C    T    360.56    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DB;DP=22;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=0.7887;MQ=59.15;MQ0=0;MQRankSum=1.123;QD=16.39;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342505    GT:AD:DP:GQ:PL    0/1:9,13:22:99:391,0,245
1    65684425    rs11208611    C    T    645.75    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=58;Dels=0.0;FS=1.209;HRun=3;HaplotypeScore=0.0;MQ=52.76;MQ0=0;MQRankSum=1.035;QD=11.13;ReadPosRankSum=-0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327299    GT:AD:DP:GQ:PL    0/1:30,28:58:99:676,0,878
1    65775187    rs7528227    G    C    81.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAJC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263441    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:114,9,0
1    65895927    rs9436301    T    C    156.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497874    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:189,15,0
1    65897747    rs1887285    A    G    77.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.84;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484243    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,103
1    66036501    rs2186248    G    T    715.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=25.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    1/1:0,28:28:60.19:748,60,0
1    66062325    rs3828034    A    G    278.05    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.172;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=58.63;MQ0=0;MQRankSum=-1.025;QD=16.36;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    0/1:7,10:17:99:308,0,191
1    66071082    rs79035087    T    A    68.92    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.23;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    0/1:1,3:4:17.59:99,0,18
1    66075952    rs8179183    G    C    114.11    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=28;Dels=0.0;FS=1.983;HRun=0;HaplotypeScore=1.6918;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=4.08;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=K656N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_66075897_66075979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    0/1:22,6:28:99:144,0,716
1    66085433    rs3790437    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    66085525    rs3790438    T    A    173.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.259;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.968;QD=12.43;ReadPosRankSum=1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    0/1:8,6:14:99:204,0,271
1    66085574    rs3790439    T    A    299.95    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.758;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.165;QD=13.63;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    0/1:12,10:22:99:330,0,396
1    66088701    rs12067936    C    A    168.88    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.683;QD=9.93;ReadPosRankSum=-1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    0/1:8,9:17:99:199,0,236
1    66092017    rs6588153    T    A    68.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.61;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    0/1:4,4:8:98.90:99,0,144
1    66094928    rs1938499    A    T    401.79    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.688;DB;DP=39;Dels=0.0;FS=0.0;HRun=11;HaplotypeScore=0.8321;MQ=59.41;MQ0=0;MQRankSum=-1.026;QD=10.3;ReadPosRankSum=0.407;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344610    GT:AD:DP:GQ:PL    0/1:19,20:39:99:432,0,588
1    66099013    rs17415296    C    A    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.43;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371059    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,146
1    66102257    rs1805096    G    A    1457.66    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=6.326;DB;DP=95;Dels=0.0;FS=8.071;HRun=0;HaplotypeScore=1.8664;MQ=59.8;MQ0=0;MQRankSum=-0.346;QD=15.34;ReadPosRankSum=0.771;SNPEFF_AMINO_ACID_CHANGE=P1019;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_66101874_66107242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349533    GT:AD:DP:GQ:PL    0/1:46,49:95:99:1488,0,1408
1    66102755    rs70940806    A    ATTACT    1079.08    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.912;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=111.698;IndelType=I;MQ=51.98;MQ0=0;MQRankSum=-2.144;QD=44.96;ReadPosRankSum=-0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371060    GT:AD:DP:GQ:PL    0/1:15,8:24:99:1118,0,631
1    66828699    rs783040    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329654    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    66829262    rs783039    A    G    864.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=30.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524999    GT:AD:DP:GQ:PL    1/1:0,28:28:66.21:898,66,0
1    66831370    rs783036    G    A    93.91    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.967;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.218;QD=3.35;ReadPosRankSum=1.592;SNPEFF_AMINO_ACID_CHANGE=E202;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_66831350_66831449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000480109    GT:AD:DP:GQ:PL    0/1:22,6:28:99:124,0,702
1    67000103    rs1445578    A    G    399.46    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=1.431;DB;DP=27;Dels=0.0;FS=3.916;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.481;QD=14.79;ReadPosRankSum=0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:10,17:27:99:429,0,296
1    67000162    rs1445579    T    G    252.83    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=19.45;ReadPosRankSum=-2.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:5,8:13:99:283,0,161
1    67098974    rs6701907    A    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:72,0,70
1    67101802    rs7546825    A    G    145.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=14.51;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,177
1    67109335    rs7526812    A    G    1115.68    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.314;DB;DP=79;Dels=0.0;FS=11.676;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.155;QD=14.12;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=K106R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67109227_67109402;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371036    GT:AD:DP:GQ:PL    0/1:39,40:79:99:1146,0,1245
1    67126114    rs12094526    A    G    332.22    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.357;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=19.54;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:6,11:17:99:362,0,207
1    67136537    rs6686606    C    T    104.25    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.866;QD=9.48;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139147.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502413    GT:AD:DP:GQ:PL    0/1:6,5:11:99:134,0,212
1    67136845    rs11208942    G    T    133.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.15;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139147.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502413    GT:AD:DP:GQ:PL    0/1:6,5:11:99:164,0,213
1    67145156    rs11208945    T    A    176.98    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=13.61;ReadPosRankSum=1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468286    GT:AD:DP:GQ:PL    0/1:7,6:13:99:207,0,244
1    67145322    rs10889644    C    A    1879.37    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.135;DB;DP=105;Dels=0.0;FS=1.894;HRun=1;HaplotypeScore=3.8626;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=17.9;ReadPosRankSum=-1.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468286    GT:AD:DP:GQ:PL    0/1:41,64:105:99:1909,0,1227
1    67154730    rs111593948    CAA    C    362.18    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.828;DB;DP=81;FS=0.0;HRun=17;HaplotypeScore=564.3039;IndelType=D;MQ=52.74;MQ0=1;MQRankSum=0.646;QD=4.42;ReadPosRankSum=2.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:35,27:81:99:401,0,632
1    67160336    rs2146904    A    G    227.20    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.818;QD=22.72;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480548    GT:AD:DP:GQ:PL    0/1:3,7:10:94.60:257,0,95
1    67195184    rs1032635    C    G    582.63    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=3.264;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=19.42;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:13,17:30:99:613,0,431
1    67195192    rs1032634    C    G    471.17    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.342;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=17.45;ReadPosRankSum=-0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:12,15:27:99:501,0,369
1    67205327    rs473470    C    T    81.66    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.33;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237247    GT:AD:DP:GQ:PL    0/1:1,4:5:30.61:112,0,31
1    67266756    rs549148    T    A    516.61    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=50;Dels=0.0;FS=6.253;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.495;QD=10.33;ReadPosRankSum=-0.01;SNPEFF_AMINO_ACID_CHANGE=Q50L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67266730_67266939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304526    GT:AD:DP:GQ:PL    0/1:32,18:50:99:547,0,1012
1    67279881    rs74609208    C    A    216.17    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=5.825;HRun=1;HaplotypeScore=1.5616;MQ=60.0;MQ0=0;MQRankSum=-0.953;QD=13.51;ReadPosRankSum=1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371026    GT:AD:DP:GQ:PL    0/1:7,9:16:99:246,0,208
1    67288045    rs482082    C    T    621.73    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.726;DB;DP=63;Dels=0.0;FS=2.296;HRun=0;HaplotypeScore=0.9997;MQ=59.27;MQ0=0;MQRankSum=0.849;QD=9.87;ReadPosRankSum=-0.008;SNPEFF_AMINO_ACID_CHANGE=R545Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67288044_67288200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431318    GT:AD:DP:GQ:PL    0/1:40,22:63:99:652,0,1115
1    67288229    rs41300323    C    A    123.78    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.132;QD=6.51;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371026    GT:AD:DP:GQ:PL    0/1:13,6:19:99:154,0,479
1    67292473    rs34718535    A    AT    1507.67    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=7.223;DB;DP=73;FS=2.853;HRun=1;HaplotypeScore=299.4537;IndelType=I;MQ=58.92;MQ0=0;MQRankSum=-0.731;QD=20.65;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371026    GT:AD:DP:GQ:PL    0/1:39,34:73:99:1547,0,1187
1    67292478    rs36067642    T    A    910.05    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.723;DB;DP=73;Dels=0.0;FS=1.145;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.105;QD=12.47;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371026    GT:AD:DP:GQ:PL    0/1:35,38:73:99:940,0,1177
1    67303303    rs6698076    A    G    104.41    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=7.46;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371026    GT:AD:DP:GQ:PL    0/1:9,5:14:99:134,0,324
1    67327894    rs34182923    A    G    702.57    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.825;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.69;MQ0=0;MQRankSum=0.355;QD=11.71;ReadPosRankSum=0.053;SNPEFF_AMINO_ACID_CHANGE=S110;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67327830_67327985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000464352    GT:AD:DP:GQ:PL    0/1:36,24:60:99:733,0,1057
1    67358740    rs7513846    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9632;MQ=47.08;MQ0=0;MQRankSum=1.026;QD=10.0;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532629    GT:AD:DP:GQ:PL    1/1:2,3:5:6.02:81,6,0
1    67359195    rs3008881    T    A    88.61    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.278;QD=8.06;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371022    GT:AD:DP:GQ:PL    0/1:7,4:11:99:119,0,237
1    67390416    rs3008858    G    C    1566.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.92;MQ0=0;QD=29.01;SNPEFF_AMINO_ACID_CHANGE=C33W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67390345_67390529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371022    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1599,129,0
1    67390468    rs1886686    C    G    2145.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.03;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=G16A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67390345_67390529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR78;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371022    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2179,166,0
1    67394707    rs146880793    AG    A    1003.94    PASS    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=5.066;DB;DP=70;FS=0.939;HRun=1;HaplotypeScore=205.191;IndelType=D;MQ=60.37;MQ0=0;MQRankSum=0.357;QD=14.34;ReadPosRankSum=0.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355977    GT:AD:DP:GQ:PL    0/1:39,31:70:99:1043,0,1639
1    67423997    rs142198730    T    TTTCTC    2192.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=90.4998;IndelType=I;MQ=48.53;MQ0=0;QD=87.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355356    GT:AD:DP:GQ:PL    1/1:5,18:25:75.26:2234,75,0
1    67424488    rs112036823    A    G    230.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=8.54;ReadPosRankSum=1.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355356    GT:AD:DP:GQ:PL    0/1:18,9:27:99:261,0,604
1    67425311    rs2985794    T    G    1371.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355356    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1404,105,0
1    67425494    rs67912833    A    AT    567.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.132;DB;DP=30;FS=0.0;HRun=11;HaplotypeScore=108.0054;IndelType=I;MQ=57.66;MQ0=0;MQRankSum=1.463;QD=18.93;ReadPosRankSum=-1.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479067    GT:AD:DP:GQ:PL    1/1:10,20:30:18.02:610,18,0
1    67436446    rs4553158    A    G    464.68    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.036;DB;DP=36;Dels=0.0;FS=1.767;HRun=0;HaplotypeScore=0.734;MQ=58.3;MQ0=0;MQRankSum=-0.977;QD=12.91;ReadPosRankSum=-0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355356    GT:AD:DP:GQ:PL    0/1:17,19:36:99:495,0,530
1    67474880    rs12061148    T    C    140.91    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.81;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235345    GT:AD:DP:GQ:PL    0/1:6,5:11:99:171,0,201
1    67474977    rs2755271    C    T    86.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235345    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    67487109    rs77253931    T    C    154.66    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.726;MQ=58.63;MQ0=0;MQRankSum=0.342;QD=9.1;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235345    GT:AD:DP:GQ:PL    0/1:10,7:17:99:185,0,359
1    67487119    rs2065002    C    A    380.56    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.079;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8938;MQ=59.03;MQ0=0;MQRankSum=-0.381;QD=15.86;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235345    GT:AD:DP:GQ:PL    0/1:10,14:24:99:411,0,325
1    67507734    rs2815375    T    A    146.68    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=1.034;QD=13.33;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235345    GT:AD:DP:GQ:PL    0/1:4,7:11:99:177,0,129
1    67508080    rs10546548    CCACT    C    2976.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=0;HaplotypeScore=285.9361;IndelType=D;MQ=52.86;MQ0=1;QD=53.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235345    GT:AD:DP:GQ:PL    1/1:3,53:55:99:3019,157,0
1    67512903    rs1024229    G    T    572.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235345    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:606,45,0
1    67512920    rs1024230    A    C    742.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235345    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:775,60,0
1    67558739    rs6588237    C    T    2862.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.67;SNPEFF_AMINO_ACID_CHANGE=T384;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67557859_67559287;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371006    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2895,217,0
1    67560897    rs10889653    A    G    610.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371005    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:644,54,0
1    67560956    rs11208997    C    T    1319.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.67;SNPEFF_AMINO_ACID_CHANGE=V189I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67560918_67561104;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371006    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1353,99,0
1    67561265    rs2145812    T    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371005    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    67562106    rs6670381    G    T    244.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371004    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
1    67568824    rs1885276    G    T    415.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371004    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:448,33,0
1    67577367    rs6588240    A    T    1870.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371004    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1903,141,0
1    67591347    rs6691094    A    G    693.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5224;MQ=58.99;MQ0=0;QD=30.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371003    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:727,63,0
1    67591660    rs4655520    G    A    174.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371003    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:207,15,0
1    67633812    rs1884444    G    T    705.57    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.341;DB;DP=53;Dels=0.0;FS=6.693;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=0.447;QD=13.31;ReadPosRankSum=1.341;SNPEFF_AMINO_ACID_CHANGE=Q3H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67633775_67633873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347310    GT:AD:DP:GQ:PL    0/1:29,23:53:99:736,0,880
1    67648294    rs11465788    C    T    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347310    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,111
1    67648460    rs6687620    T    C    2217.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347310    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2250,169,0
1    67666705    rs61780315    A    G    260.11    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.841;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=17.34;ReadPosRankSum=-1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347310    GT:AD:DP:GQ:PL    0/1:4,11:15:99:290,0,124
1    67672765    rs7539625    G    A    709.69    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.481;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.51;MQ0=0;MQRankSum=1.23;QD=15.1;ReadPosRankSum=0.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347310    GT:AD:DP:GQ:PL    0/1:21,26:47:99:740,0,630
1    67672911    rs7539643    C    T    40.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543799    GT:AD:DP:GQ:PL    0/1:2,2:4:49.46:70,0,49
1    67685116    rs2863212    C    T    442.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347310    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:476,36,0
1    67685387    rs7530511    T    C    1948.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.65;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=59.65;MQ0=0;MQRankSum=0.379;QD=29.98;ReadPosRankSum=1.624;SNPEFF_AMINO_ACID_CHANGE=L169P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67685257_67685413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431791    GT:AD:DP:GQ:PL    1/1:1,64:65:99:1982,120,0
1    67685443    rs7518660    G    A    580.90    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.013;DB;DP=41;Dels=0.0;FS=1.571;HRun=0;HaplotypeScore=0.0;MQ=58.51;MQ0=0;MQRankSum=0.352;QD=14.17;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347310    GT:AD:DP:GQ:PL    0/1:21,20:41:99:611,0,690
1    67705726    rs10889671    A    G    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL23R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347310    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:118,9,0
1    67787691    rs17129778    A    T    307.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.491;QD=15.39;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12RB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262345    GT:AD:DP:GQ:PL    0/1:10,10:20:99:338,0,335
1    67795319    rs1495963    T    C    1651.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=S238;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67795270_67795412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12RB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262345    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1685,129,0
1    67796258    rs11463498    G    GT    492.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=12;HaplotypeScore=71.593;IndelType=I;MQ=59.94;MQ0=0;QD=22.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12RB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262345    GT:AD:DP:GQ:PL    1/1:3,16:22:59.60:535,60,0
1    67796641    rs17129795    ATTAAC    A    287.31    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=59.7433;IndelType=D;MQ=56.59;MQ0=0;MQRankSum=0.248;QD=26.12;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12RB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262345    GT:AD:DP:GQ:PL    0/1:5,6:11:99:326,0,245
1    67852141    rs12138812    A    G    68.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.988;QD=11.38;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12RB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262345    GT:AD:DP:GQ:PL    0/1:3,3:6:98.25:98,0,103
1    67852188    .    G    A    165.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.665;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=58.84;MQ0=0;MQRankSum=1.042;QD=8.29;ReadPosRankSum=0.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12RB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262345    GT:AD:DP:GQ:PL    0/1:12,8:20:99:196,0,351
1    67852335    rs4297265    G    A    737.52    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=54;Dels=0.0;FS=1.086;HRun=0;HaplotypeScore=0.9999;MQ=59.14;MQ0=0;MQRankSum=1.17;QD=13.66;ReadPosRankSum=-0.313;SNPEFF_AMINO_ACID_CHANGE=T557;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67852262_67852352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12RB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544434    GT:AD:DP:GQ:PL    0/1:24,30:54:99:768,0,679
1    67861520    rs2229546    C    A    971.42    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=0.542;DB;DP=93;Dels=0.0;FS=1.955;HRun=0;HaplotypeScore=2.1992;MQ=59.5;MQ0=0;MQRankSum=0.886;QD=10.45;ReadPosRankSum=-0.315;SNPEFF_AMINO_ACID_CHANGE=P693;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_67861230_67861830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12RB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544434    GT:AD:DP:GQ:PL    0/1:56,37:93:99:1001,0,1792
1    67890526    rs6702742    A    G    229.39    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.486;DB;DP=25;Dels=0.0;FS=2.623;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.194;QD=9.18;ReadPosRankSum=1.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361219    GT:AD:DP:GQ:PL    0/1:17,8:25:99:259,0,608
1    68151980    rs2759219    T    G    157.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.11;ReadPosRankSum=1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GADD45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370985    GT:AD:DP:GQ:PL    0/1:6,6:12:99:187,0,196
1    68173264    rs2295942    C    T    1180.69    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.058;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.732;QD=15.96;ReadPosRankSum=0.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370982    GT:AD:DP:GQ:PL    0/1:34,40:74:99:1211,0,1049
1    68603586    rs983034    C    T    340.55    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=43;Dels=0.0;FS=1.429;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.069;QD=7.92;ReadPosRankSum=1.502;SNPEFF_AMINO_ACID_CHANGE=V374I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_68603463_68603616;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370976    GT:AD:DP:GQ:PL    0/1:27,16:43:99:371,0,776
1    68603731    rs1831297    A    G    225.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=18.76;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491811    GT:AD:DP:GQ:PL    0/1:4,8:12:99:255,0,129
1    68610130    .    G    T    185.82    PASS    AB=0.24;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.399;MQ=42.83;MQ0=0;MQRankSum=-2.864;QD=7.43;ReadPosRankSum=2.965;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497187    GT:AD:DP:GQ:PL    0/1:6,19:25:99:216,0,166
1    68614013    rs2566789    A    G    139.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=13.99;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497187    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,176
1    68620762    rs3762371    G    A    1279.86    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=1.992;DB;DP=79;Dels=0.0;FS=2.283;HRun=2;HaplotypeScore=1.6316;MQ=59.71;MQ0=0;MQRankSum=1.032;QD=16.2;ReadPosRankSum=-0.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471243    GT:AD:DP:GQ:PL    0/1:33,46:79:99:1310,0,956
1    68627943    rs1808596    C    T    181.17    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=24;Dels=0.0;FS=1.81;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.334;QD=7.55;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262348    GT:AD:DP:GQ:PL    0/1:17,7:24:99:211,0,568
1    68627960    rs1808597    C    T    134.55    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.138;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.692;QD=4.81;ReadPosRankSum=0.802;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262348    GT:AD:DP:GQ:PL    0/1:21,7:28:99:165,0,623
1    68628198    rs1808598    A    G    607.08    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=4.372;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.13;MQ0=0;MQRankSum=-0.253;QD=14.45;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262348    GT:AD:DP:GQ:PL    0/1:19,23:42:99:637,0,538
1    68628201    rs1808599    C    T    550.38    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.706;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;MQRankSum=2.763;QD=13.76;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262348    GT:AD:DP:GQ:PL    0/1:21,19:40:99:580,0,603
1    68628372    rs11803411    G    A    96.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.1;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262348    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,136
1    68897125    rs116540274    C    T    1419.89    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DB;DP=114;Dels=0.0;FS=16.498;HRun=0;HaplotypeScore=2.4691;MQ=59.8;MQ0=0;MQRankSum=0.558;QD=12.46;ReadPosRankSum=0.484;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPE65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262340    GT:AD:DP:GQ:PL    0/1:63,51:114:99:1450,0,1965
1    68904418    rs3118421    A    G    521.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=27.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPE65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262340    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:554,48,0
1    68943436    rs1924542    G    A    920.56    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=62;Dels=0.0;FS=1.731;HRun=0;HaplotypeScore=0.8667;MQ=59.02;MQ0=0;MQRankSum=0.768;QD=14.85;ReadPosRankSum=0.909;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370964    GT:AD:DP:GQ:PL    0/1:32,30:62:99:951,0,1079
1    68943442    rs3790476    A    G    829.33    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.011;DB;DP=69;Dels=0.0;FS=1.493;HRun=0;HaplotypeScore=0.8667;MQ=59.12;MQ0=0;MQRankSum=-0.09;QD=12.02;ReadPosRankSum=-0.414;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370964    GT:AD:DP:GQ:PL    0/1:34,35:69:99:859,0,1135
1    68943665    rs12119046    T    G    2238.23    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.487;DB;DP=129;Dels=0.0;FS=0.837;HRun=0;HaplotypeScore=0.7887;MQ=59.64;MQ0=0;MQRankSum=-0.534;QD=17.35;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370964    GT:AD:DP:GQ:PL    0/1:59,70:129:99:2268,0,1780
1    68947318    rs74368173    C    CA    381.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=5;HaplotypeScore=52.5234;IndelType=I;MQ=62.45;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370964    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:424,33,0
1    68952564    rs138180992    AAC    A    297.68    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.985;DB;DP=43;FS=3.043;HRun=0;HaplotypeScore=226.6216;IndelType=D;MQ=57.14;MQ0=0;MQRankSum=1.293;QD=6.77;ReadPosRankSum=1.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525124    GT:AD:DP:GQ:PL    0/1:18,15:43:99:337,0,501
1    68959867    rs3790482    C    T    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370964    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
1    68960476    rs4926345    T    G    84.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=0.727;QD=21.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370964    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:115,0,30
1    70225832    rs17397812    G    A    210.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=10.02;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310961    GT:AD:DP:GQ:PL    0/1:12,9:21:99:240,0,406
1    70304758    rs12735430    A    G    693.76    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.033;DB;DP=65;Dels=0.0;FS=2.114;HRun=1;HaplotypeScore=2.3919;MQ=60.0;MQ0=0;MQRankSum=-0.559;QD=10.67;ReadPosRankSum=0.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335298    GT:AD:DP:GQ:PL    0/1:35,30:65:99:724,0,1000
1    70397087    rs7530457    T    C    217.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000035383    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
1    70587360    rs641909    C    T    150.18    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.496;MQ=57.39;MQ0=0;MQRankSum=0.956;QD=16.69;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000035383    GT:AD:DP:GQ:PL    0/1:3,5:9:98.70:180,0,99
1    70611347    rs595662    A    G    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370952    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    70832053    rs6661178    G    A    699.55    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.39;MQ0=0;MQRankSum=-0.882;QD=9.2;ReadPosRankSum=-0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486110    GT:AD:DP:GQ:PL    0/1:47,28:76:99:730,0,1476
1    70904523    rs112004441    T    TTGTGTG    482.70    PASS    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=239.3229;IndelType=I;MQ=52.57;MQ0=0;MQRankSum=-2.879;QD=14.63;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346806    GT:AD:DP:GQ:PL    0/1:23,6:33:99:522,0,491
1    71331498    rs1409986    A    G    842.32    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.3499;MQ=57.0;MQ0=0;MQRankSum=-0.488;QD=15.31;ReadPosRankSum=-0.067;SNPEFF_AMINO_ACID_CHANGE=S404P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_71331372_71331516;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370934    GT:AD:DP:GQ:PL    0/1:22,33:55:99:872,0,650
1    71418452    rs5699    C    T    52.12    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.93;QD=4.01;ReadPosRankSum=0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351052    GT:AD:DP:GQ:PL    0/1:10,3:13:82.11:82,0,373
1    71477841    rs5673    A    T    266.46    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=34;Dels=0.0;FS=1.908;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.228;QD=7.84;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306666    GT:AD:DP:GQ:PL    0/1:24,10:34:99:296,0,800
1    71512643    rs5671    C    A    731.65    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.724;DB;DP=54;Dels=0.0;FS=2.434;HRun=1;HaplotypeScore=0.8941;MQ=59.57;MQ0=0;MQRankSum=-0.179;QD=13.55;ReadPosRankSum=-0.16;SNPEFF_AMINO_ACID_CHANGE=T206;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_71512364_71513471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306666    GT:AD:DP:GQ:PL    0/1:28,26:54:99:762,0,646
1    71536574    rs11583800    G    C    1310.80    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.224;DB;DP=84;Dels=0.0;FS=0.863;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.976;QD=15.6;ReadPosRankSum=0.279;SNPEFF_AMINO_ACID_CHANGE=R207G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_71536510_71536679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRANB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254821    GT:AD:DP:GQ:PL    0/1:37,47:84:99:1341,0,1230
1    71537980    rs41287936    C    T    298.28    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.223;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9914;MQ=60.0;MQ0=0;MQRankSum=0.188;QD=10.65;ReadPosRankSum=-0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRANB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254821    GT:AD:DP:GQ:PL    0/1:17,11:28:99:328,0,538
1    71538191    rs11556475    A    G    1502.22    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.743;DB;DP=102;Dels=0.0;FS=4.951;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.409;QD=14.73;ReadPosRankSum=-0.884;SNPEFF_AMINO_ACID_CHANGE=Y114;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_71538155_71538231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRANB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254821    GT:AD:DP:GQ:PL    0/1:49,53:102:99:1532,0,1426
1    71544069    rs74544306    G    A    506.59    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.606;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.082;QD=19.48;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRANB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254821    GT:AD:DP:GQ:PL    0/1:10,16:26:99:537,0,332
1    72058192    rs1611913    C    T    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306821    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    72058367    rs1334004    C    T    429.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306821    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:462,36,0
1    72058405    rs1334005    T    C    666.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306821    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:699,54,0
1    72058552    rs1413368    G    A    1916.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=T168;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_72058500_72058651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEGR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306821    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1950,150,0
1    72058775    rs1413369    G    A    145    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306821    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:178,15,0
1    72242039    rs6424448    G    A    406.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306821    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:439,33,0
1    74492769    rs1384884    G    T    216.65    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=24.07;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRIQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354431    GT:AD:DP:GQ:PL    0/1:2,7:9:57.80:247,0,58
1    74506753    rs6681458    T    C    70.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=7.83;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRIQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354431    GT:AD:DP:GQ:PL    0/1:6,3:9:99:100,0,217
1    74507711    rs7538410    T    G    137.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.453;QD=13.7;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRIQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354431    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,178
1    74575182    rs1340472    C    T    1633.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=124;Dels=0.0;FS=0.723;HRun=2;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=13.18;ReadPosRankSum=-0.328;SNPEFF_AMINO_ACID_CHANGE=A147T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_74575078_74575237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRIQ3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370909    GT:AD:DP:GQ:PL    0/1:61,61:124:99:1664,0,1799
1    74646514    rs6701961    C    T    1029.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=59.4;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRIQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354431    GT:AD:DP:GQ:PL    1/1:0,31:31:84.26:1062,84,0
1    74663814    rs1412825    C    G    155.05    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9912;MQ=57.05;MQ0=0;MQRankSum=0.956;QD=19.38;ReadPosRankSum=0.956;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_74663680_74663871;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRIQ3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354431    GT:AD:DP:GQ:PL    0/1:3,5:8:93.82:185,0,94
1    74664149    rs4422957    T    C    42.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.026;QD=8.47;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC093158.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370891    GT:AD:DP:GQ:PL    0/1:2,3:5:68.51:72,0,69
1    74665493    rs792310    G    A    536.28    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=41;Dels=0.0;FS=3.035;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.165;QD=13.08;ReadPosRankSum=-1.11;SNPEFF_AMINO_ACID_CHANGE=V74;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_74665348_74665515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI3K;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000472069    GT:AD:DP:GQ:PL    0/1:22,19:41:99:566,0,641
1    74669973    rs9425024    T    G    546    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.64;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=17.61;ReadPosRankSum=-2.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC093158.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370891    GT:AD:DP:GQ:PL    0/1:14,17:31:99:576,0,485
1    74671519    rs571848    A    G    522.74    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.905;DB;DP=38;Dels=0.0;FS=1.363;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=1.448;QD=13.76;ReadPosRankSum=-0.777;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI3K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467578    GT:AD:DP:GQ:PL    0/1:18,20:38:99:553,0,555
1    74701295    rs505508    T    A    761.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI3K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524915    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:795,60,0
1    74701651    rs500203    A    T    78.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.11;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI3K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524915    GT:AD:DP:GQ:PL    0/1:2,4:6:69.41:109,0,69
1    74701950    rs532221    T    A    386.48    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.981;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.138;QD=13.8;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI3K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524915    GT:AD:DP:GQ:PL    0/1:13,15:28:99:416,0,456
1    74737081    rs514012    A    G    162.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC093158.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326637    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
1    74819077    rs6424586    T    G    739.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC093158.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326637    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:773,57,0
1    74835788    rs12034234    T    C    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC093158.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    74937856    .    ATCT    A    1877.90    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=8.026;DP=126;FS=1.48;HRun=0;HaplotypeScore=500.3929;IndelType=D;MQ=58.68;MQ0=0;MQRankSum=-0.396;QD=14.9;ReadPosRankSum=-0.23;SNPEFF_AMINO_ACID_CHANGE=R483-;SNPEFF_CODON_CHANGE=aga/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_1_74937794_74937885;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294635    GT:AD:DP:GQ:PL    0/1:77,49:126:99:1917,0,4141
1    75006027    rs3895907    A    G    978.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC093158.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326637    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1012,78,0
1    75006076    rs3845348    G    A    486.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC093158.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326637    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:520,39,0
1    75036783    rs9326115    T    C    2131.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433746    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2165,163,0
1    75036812    rs9326116    C    T    2727.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=V1528M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75036783_75039175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326665    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2761,208,0
1    75037845    rs12723334    A    G    1186.89    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.357;DB;DP=112;Dels=0.0;FS=1.591;HRun=0;HaplotypeScore=0.6651;MQ=59.83;MQ0=0;MQRankSum=0.431;QD=10.6;ReadPosRankSum=-1.287;SNPEFF_AMINO_ACID_CHANGE=S1183;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75036783_75039175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326665    GT:AD:DP:GQ:PL    0/1:65,46:112:99:1217,0,1898
1    75038228    rs11580409    A    C    2371.22    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.375;DB;DP=145;Dels=0.0;FS=3.04;HRun=0;HaplotypeScore=0.9665;MQ=59.36;MQ0=0;MQRankSum=-0.369;QD=16.35;ReadPosRankSum=0.925;SNPEFF_AMINO_ACID_CHANGE=L1056V;SNPEFF_CODON_CHANGE=Tta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75036783_75039175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326665    GT:AD:DP:GQ:PL    0/1:66,79:145:99:2401,0,1915
1    75039219    rs77910454    G    A    391.48    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=20.6;ReadPosRankSum=-1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326665    GT:AD:DP:GQ:PL    0/1:7,12:19:99:421,0,241
1    75072264    rs41289216    G    T    619.93    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=0.083;DB;DP=61;Dels=0.0;FS=5.398;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.448;QD=10.16;ReadPosRankSum=0.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326665    GT:AD:DP:GQ:PL    0/1:40,21:61:99:650,0,1372
1    75097426    rs11210490    G    C    848.10    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.669;DB;DP=63;Dels=0.0;FS=1.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=1.014;QD=13.46;ReadPosRankSum=-2.117;SNPEFF_AMINO_ACID_CHANGE=P264A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75097397_75097612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326665    GT:AD:DP:GQ:PL    0/1:29,34:63:99:878,0,974
1    75108863    rs623171    A    C    145.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.668;QD=14.58;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326665    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,177
1    75132462    rs76649713    T    TA    928.63    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.027;DB;DP=82;FS=1.843;HRun=9;HaplotypeScore=192.4425;IndelType=I;MQ=60.4;MQ0=0;MQRankSum=0.154;QD=11.32;ReadPosRankSum=-0.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326665    GT:AD:DP:GQ:PL    0/1:46,35:82:99:968,0,880
1    75172001    rs7527057    T    A    2377.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.805;QD=33.02;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=G186;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75171170_75172141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370872    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2411,145,0
1    75172756    rs10718328    TAA    T    1933.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.713;DB;DP=102;FS=4.262;HRun=14;HaplotypeScore=434.5765;IndelType=D;MQ=60.37;MQ0=0;MQRankSum=-0.086;QD=18.95;ReadPosRankSum=1.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370870    GT:AD:DP:GQ:PL    1/1:19,78:102:99:1975,138,0
1    75173051    rs4650281    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441120    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    75190452    rs1051122    C    T    2260.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.636;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.84;MQ=59.17;MQ0=0;MQRankSum=1.107;QD=30.97;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=G18;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75190395_75190518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340866    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2294,132,0
1    75199152    rs277373    C    T    411.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYW3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370867    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:444,33,0
1    75214390    rs749690    G    C    671.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYW3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370867    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:705,51,0
1    75603055    rs1526503    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294638    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    75609049    rs12041465    A    C    87.02    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=6.22;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294638    GT:AD:DP:GQ:PL    0/1:9,5:14:99:117,0,297
1    75614380    rs112814416    CT    C    63.73    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=22;FS=0.0;HRun=14;HaplotypeScore=113.7465;IndelType=D;MQ=56.78;MQ0=0;MQRankSum=0.067;QD=2.9;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294638    GT:AD:DP:GQ:PL    0/1:16,6:22:30.28:103,0,30
1    75622616    rs941032    C    T    1451.79    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8907;MQ=59.58;MQ0=0;MQRankSum=0.363;QD=13.08;ReadPosRankSum=-0.558;SNPEFF_AMINO_ACID_CHANGE=H273;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75622578_75622761;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356261    GT:AD:DP:GQ:PL    0/1:59,52:111:99:1482,0,1824
1    75626420    rs2462955    A    T    512.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294638    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:546,42,0
1    75669619    .    T    TTTG    1162.96    PASS    AC=2;AF=1.00;AN=2;DP=31;FS=0.0;HRun=0;HaplotypeScore=120.1888;IndelType=I;MQ=57.34;MQ0=0;QD=37.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    1/1:9,22:31:66.21:1205,66,0
1    75672376    rs1948874    A    G    871.32    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.697;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.69;MQ0=0;MQRankSum=-0.225;QD=11.77;ReadPosRankSum=1.747;SNPEFF_AMINO_ACID_CHANGE=S562;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75671953_75672404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535611    GT:AD:DP:GQ:PL    0/1:39,35:74:99:901,0,1109
1    75679569    rs71697809    C    CT    723.09    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.225;DB;DP=72;FS=0.967;HRun=10;HaplotypeScore=211.6126;IndelType=I;MQ=59.23;MQ0=0;MQRankSum=0.321;QD=10.04;ReadPosRankSum=-1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:41,30:72:99:762,0,658
1    75680433    rs687715    G    A    292.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=19.5;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:6,9:15:99:323,0,201
1    75680545    rs688513    T    G    129.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
1    75680565    rs688539    G    A    83.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    75681351    rs594470    A    T    211.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
1    75681511    rs595009    T    C    1454.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=36.35;SNPEFF_AMINO_ACID_CHANGE=Q422;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75681439_75681542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535611    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1487,108,0
1    75684529    rs610159    A    G    405.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:438,33,0
1    75685403    rs600734    T    C    222.86    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.398;QD=20.26;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:4,7:11:99:253,0,132
1    75685643    rs12042874    T    C    171.24    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.312;QD=13.17;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:6,7:13:99:201,0,216
1    75699646    rs10493564    T    C    1518.41    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=89;Dels=0.0;FS=3.87;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=17.06;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:40,49:89:99:1548,0,1221
1    75699771    rs10493565    A    G    1299.79    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.351;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.56;ReadPosRankSum=-0.745;SNPEFF_AMINO_ACID_CHANGE=I121;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75699671_75699783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535611    GT:AD:DP:GQ:PL    0/1:31,43:74:99:1330,0,949
1    75699831    rs10493566    G    A    653.86    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=28;Dels=0.0;FS=7.258;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.551;QD=23.35;ReadPosRankSum=0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:8,20:28:99:684,0,248
1    75702674    rs17096508    G    A    607.47    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.328;DB;DP=46;Dels=0.0;FS=1.253;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.693;QD=13.21;ReadPosRankSum=-0.897;SNPEFF_AMINO_ACID_CHANGE=L116;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75702672_75702755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535611    GT:AD:DP:GQ:PL    0/1:22,24:46:99:637,0,678
1    75707652    rs7556057    C    T    603.72    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.12;ReadPosRankSum=-1.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469525    GT:AD:DP:GQ:PL    0/1:25,20:46:99:634,0,791
1    75708529    rs1856128    A    T    543.95    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.047;DB;DP=62;Dels=0.0;FS=5.952;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.014;QD=8.77;ReadPosRankSum=-1.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469525    GT:AD:DP:GQ:PL    0/1:33,29:62:99:574,0,1070
1    75716925    rs588098    C    T    540.71    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.9;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.531;QD=10.4;ReadPosRankSum=-0.299;SNPEFF_AMINO_ACID_CHANGE=V105;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_75716895_75716979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:32,20:52:99:571,0,891
1    75766186    rs623850    G    A    145.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.05;MQ0=0;MQRankSum=-1.517;QD=18.23;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:3,5:8:92.35:176,0,92
1    76007232    rs211744    C    T    252.18    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.646;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=14.83;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:8,9:17:99:282,0,252
1    76007268    rs211743    C    G    60.50    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=5.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.05;ReadPosRankSum=1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370855    GT:AD:DP:GQ:PL    0/1:7,3:10:90.49:90,0,251
1    76194054    rs7524467    C    G    518.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=44;Dels=0.0;FS=1.65;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.049;QD=11.79;ReadPosRankSum=-1.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370834    GT:AD:DP:GQ:PL    0/1:24,20:44:99:549,0,779
1    76194229    rs11316888    GT    G    1110.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=4;HaplotypeScore=93.1893;IndelType=D;MQ=60.32;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370834    GT:AD:DP:GQ:PL    1/1:2,32:34:96.29:1153,96,0
1    76194306    rs1146572    A    G    163.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=13.66;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370834    GT:AD:DP:GQ:PL    0/1:6,6:12:99:194,0,211
1    76198436    rs2275378    T    C    1771.91    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.374;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.59;MQ0=0;MQRankSum=-0.814;QD=17.54;ReadPosRankSum=0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370834    GT:AD:DP:GQ:PL    0/1:43,58:101:99:1802,0,1313
1    76198785    rs3818855    G    A    1806.92    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=4.056;DB;DP=154;Dels=0.0;FS=2.083;HRun=0;HaplotypeScore=1.5774;MQ=59.7;MQ0=0;MQRankSum=0.109;QD=11.73;ReadPosRankSum=-0.958;SNPEFF_AMINO_ACID_CHANGE=A112;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_76198736_76198834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370834    GT:AD:DP:GQ:PL    0/1:85,68:154:99:1837,0,2500
1    76199345    rs2153126    C    G    673.96    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.913;DB;DP=50;Dels=0.0;FS=1.53;HRun=0;HaplotypeScore=2.6837;MQ=60.0;MQ0=0;MQRankSum=-0.391;QD=13.48;ReadPosRankSum=-0.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473018    GT:AD:DP:GQ:PL    0/1:26,24:50:99:704,0,783
1    76205643    rs12127402    C    A    305.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.803;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.414;QD=12.23;ReadPosRankSum=-0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370834    GT:AD:DP:GQ:PL    0/1:15,10:25:99:336,0,519
1    76216330    rs11161521    T    C    141.72    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.71;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526930    GT:AD:DP:GQ:PL    0/1:3,5:8:94.27:172,0,94
1    76227022    rs1061337    A    G    784.04    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=53;Dels=0.0;FS=1.166;HRun=1;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=0.33;QD=14.79;ReadPosRankSum=1.099;SNPEFF_AMINO_ACID_CHANGE=V198;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_76226807_76227055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543667    GT:AD:DP:GQ:PL    0/1:28,25:53:99:814,0,860
1    76251746    rs1146632    T    C    134.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=26.88;ReadPosRankSum=-0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319942    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:167,12,0
1    76252011    rs1146634    G    A    342.88    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=30;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.699;QD=11.43;ReadPosRankSum=-1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319942    GT:AD:DP:GQ:PL    0/1:18,12:30:99:373,0,596
1    76252687    rs1146636    T    C    220.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.093;QD=16.96;ReadPosRankSum=1.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319942    GT:AD:DP:GQ:PL    0/1:6,7:13:99:250,0,197
1    76255228    rs11161620    G    A    216.35    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.088;DB;DP=19;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.766;QD=11.39;ReadPosRankSum=-1.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528016    GT:AD:DP:GQ:PL    0/1:10,9:19:99:246,0,290
1    76257892    rs12703    A    T    774.61    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.83;DB;DP=56;Dels=0.0;FS=4.107;HRun=0;HaplotypeScore=1.7834;MQ=59.59;MQ0=0;MQRankSum=0.288;QD=13.83;ReadPosRankSum=1.142;SNPEFF_AMINO_ACID_CHANGE=A202;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_76257866_76257991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319942    GT:AD:DP:GQ:PL    0/1:30,26:56:99:805,0,1002
1    76260837    rs11161626    C    T    158.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.422;QD=17.63;ReadPosRankSum=-2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319942    GT:AD:DP:GQ:PL    0/1:3,6:9:99:189,0,102
1    76269372    rs5745323    T    C    324.44    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.025;QD=19.08;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:7,10:17:99:354,0,239
1    76276353    rs12122939    T    C    379.56    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.901;QD=12.24;ReadPosRankSum=-0.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:18,13:31:99:410,0,617
1    76280543    rs1144339    A    G    215.20    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=21.52;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:3,7:10:93.54:245,0,94
1    76313874    rs2047435    C    T    512.05    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.086;QD=11.91;ReadPosRankSum=0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:24,19:43:99:542,0,738
1    76333163    rs5745433    T    G    347.92    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.33;DB;DP=31;Dels=0.0;FS=10.126;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.853;QD=11.22;ReadPosRankSum=1.687;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:17,14:31:99:378,0,552
1    76333172    rs3765682    T    C    590.89    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=41;Dels=0.0;FS=5.224;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.486;QD=14.41;ReadPosRankSum=-1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:18,23:41:99:621,0,531
1    76344011    rs1493367    C    A    326.23    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.204;DB;DP=19;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=17.17;ReadPosRankSum=1.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:9,10:19:99:356,0,297
1    76344711    rs5745449    A    T    570.94    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=3.046;DB;DP=47;Dels=0.0;FS=2.505;HRun=1;HaplotypeScore=1.8938;MQ=59.01;MQ0=0;MQRankSum=0.249;QD=12.15;ReadPosRankSum=1.225;SNPEFF_AMINO_ACID_CHANGE=L525;SNPEFF_CODON_CHANGE=ctA/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_76344677_76344813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:28,19:47:99:601,0,850
1    76344856    rs5745451    T    C    316.61    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=58.99;MQ0=0;MQRankSum=-0.769;QD=13.77;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:12,11:23:99:347,0,398
1    76344920    rs5745453    G    A    204.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
1    76346832    rs5745465    T    C    399.32    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.861;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=62.41;MQ0=0;MQRankSum=0.326;QD=18.15;ReadPosRankSum=-0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:8,14:22:99:429,0,269
1    76346920    rs5745466    C    CAT    3810.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.0;HRun=0;HaplotypeScore=165.6526;IndelType=I;MQ=61.85;MQ0=0;QD=58.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    1/1:0,64:65:99:3811,193,0
1    76354711    rs5745499    T    C    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
1    76356648    rs5745507    G    A    149.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:4,5:9:99:179,0,123
1    76378359    rs71718953    ATT    A    324.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.123;DB;DP=18;FS=0.0;HRun=12;HaplotypeScore=100.063;IndelType=D;MQ=56.51;MQ0=0;MQRankSum=1.531;QD=16.23;ReadPosRankSum=0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    1/1:10,8:18:43.30:367,43,0
1    76378360    .    T    TA    163.01    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DP=18;FS=7.57;HRun=1;HaplotypeScore=100.7358;IndelType=I;MQ=56.51;MQ0=0;MQRankSum=-0.634;QD=8.15;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263187    GT:AD:DP:GQ:PL    0/1:12,8:18:99:202,0,105
1    76771475    rs10782610    G    T    578.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328299    GT:AD:DP:GQ:PL    1/1:0,16:16:48.11:612,48,0
1    77093011    rs587021    T    G    178.61    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=16.24;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328299    GT:AD:DP:GQ:PL    0/1:4,7:11:99:209,0,136
1    77558057    rs1048575    G    C    982.95    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.356;DB;DP=82;Dels=0.0;FS=11.273;HRun=0;HaplotypeScore=0.9983;MQ=59.72;MQ0=0;MQRankSum=0.404;QD=11.99;ReadPosRankSum=1.697;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487906    GT:AD:DP:GQ:PL    0/1:50,32:82:99:1013,0,1398
1    77595399    rs144134062    AAAAT    A    732.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=148.8053;IndelType=D;MQ=43.24;MQ0=0;QD=23.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370812    GT:AD:DP:GQ:PL    1/1:16,15:31:48.16:775,48,0
1    77620035    rs839832    T    C    287.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478391    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
1    77627096    rs839825    G    A    1486.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359130    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1520,117,0
1    77632270    rs1721144    T    C    172.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359130    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
1    77634948    rs1779199    G    A    1629.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=Y124;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_77634945_77635080;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359130    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1662,120,0
1    77752996    rs1167204    T    C    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    77759380    rs2815310    C    G    96.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.33;MQ0=0;MQRankSum=0.978;QD=6.89;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    0/1:8,6:14:99:127,0,286
1    77759578    rs2815311    A    G    424.81    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.284;DB;DP=37;Dels=0.0;FS=11.146;HRun=1;HaplotypeScore=0.9998;MQ=59.38;MQ0=0;MQRankSum=0.69;QD=11.48;ReadPosRankSum=-1.916;SNPEFF_AMINO_ACID_CHANGE=A116;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_77759478_77759645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354567    GT:AD:DP:GQ:PL    0/1:21,16:37:99:455,0,703
1    77763071    rs1167207    A    G    53.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=10.72;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    0/1:2,3:5:66.73:84,0,67
1    77763542    rs1167206    G    A    1524.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=K177;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_77763519_77763632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1557,117,0
1    77857132    rs6670567    G    A    58.28    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;MQRankSum=-0.731;QD=11.66;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    0/1:1,4:5:30.20:88,0,30
1    77857210    rs6685119    A    C    104.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.354;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.74;MQ0=0;MQRankSum=0.212;QD=7.44;ReadPosRankSum=-2.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    1/1:4,10:14:17.92:137,18,0
1    77949123    rs7515509    G    A    157.26    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=9.83;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    0/1:10,6:16:99:187,0,367
1    77949129    rs7528932    A    T    131.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=10.93;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    0/1:7,5:12:99:161,0,252
1    78001881    rs10873948    T    C    212.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530826    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
1    78024162    rs10700476    T    TGG    369.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=8;HaplotypeScore=42.0754;IndelType=I;MQ=56.28;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZZZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481346    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:412,27,0
1    78024284    rs6675743    T    C    1578.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=57.57;MQ0=0;QD=35.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZZZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481346    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1612,120,0
1    78024345    rs79671213    C    CTAT    3453.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=245.6962;IndelType=I;MQ=57.83;MQ0=0;QD=61.67;SNPEFF_AMINO_ACID_CHANGE=S534SI;SNPEFF_CODON_CHANGE=tct/tcTATt;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_78024287_78025647;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344720    GT:AD:DP:GQ:PL    1/1:4,52:56:99:3454,160,0
1    78033981    rs10568325    AAAATG    A    3344.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=372.8332;IndelType=D;MQ=56.55;MQ0=0;QD=55.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZZZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370798    GT:AD:DP:GQ:PL    1/1:4,56:60:99:3345,172,0
1    78045369    rs1565852    G    A    803.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=36.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZZZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474746    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:836,63,0
1    78047503    rs36003200    C    T    1688.88    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.514;DB;DP=116;Dels=0.0;FS=0.728;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.02;QD=14.56;ReadPosRankSum=1.285;SNPEFF_AMINO_ACID_CHANGE=L128;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_78047461_78047576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZZZ3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370798    GT:AD:DP:GQ:PL    0/1:56,60:116:99:1719,0,1673
1    78179032    rs143300869    AT    A    164.42    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=57.9332;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=6.85;ReadPosRankSum=1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461986    GT:AD:DP:GQ:PL    0/1:14,10:24:99:203,0,239
1    78181750    .    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461986    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    78195366    rs72683688    T    G    106.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524536    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,125
1    78272902    rs4949822    G    A    216.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM73A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370791    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
1    78281002    rs11162386    T    C    431.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=26.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM73A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370791    GT:AD:DP:GQ:PL    1/1:0,15:16:42.09:465,42,0
1    78383467    rs1749913    G    A    1234.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294624    GT:AD:DP:GQ:PL    1/1:0,35:35:96.28:1268,96,0
1    78392446    rs1166698    G    A    1664.40    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=4.565;DB;DP=107;Dels=0.0;FS=0.749;HRun=0;HaplotypeScore=1.5362;MQ=60.0;MQ0=0;MQRankSum=-1.196;QD=15.56;ReadPosRankSum=0.345;SNPEFF_AMINO_ACID_CHANGE=G181R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_78392401_78392577;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEXN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330010    GT:AD:DP:GQ:PL    0/1:54,53:107:99:1694,0,1644
1    78396626    rs9659938    T    C    683.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330010    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:716,57,0
1    78399207    rs4483454    C    G    1002.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7078;MQ=59.2;MQ0=0;QD=34.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401035    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1036,75,0
1    78400498    rs1780051    T    C    602.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401035    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:635,48,0
1    78400540    rs1780050    A    C    325.59    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=32;Dels=0.0;FS=3.568;HRun=2;HaplotypeScore=0.8941;MQ=58.4;MQ0=0;MQRankSum=-1.048;QD=10.17;ReadPosRankSum=-0.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401035    GT:AD:DP:GQ:PL    0/1:15,17:32:99:356,0,437
1    78430689    rs77529143    A    AG    3920.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.0;HRun=1;HaplotypeScore=205.3862;IndelType=I;MQ=61.3;MQ0=0;QD=43.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FUBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421641    GT:AD:DP:GQ:PL    1/1:2,89:91:99:3920,268,0
1    78471060    rs11384806    T    TC    181.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=23.0769;IndelType=I;MQ=58.24;MQ0=0;QD=25.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAJB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370763    GT:AD:DP:GQ:PL    1/1:1,6:7:18.04:223,18,0
1    78478675    rs3790586    G    A    405.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAJB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370763    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:439,33,0
1    78481640    rs1039863    G    A    170.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAJB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426517    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
1    78560583    rs565164    G    A    439.77    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=16.91;ReadPosRankSum=-0.052;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476882    GT:AD:DP:GQ:PL    0/1:11,15:26:99:470,0,355
1    79093818    rs273259    A    G    672.81    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.836;DB;DP=51;Dels=0.0;FS=1.101;HRun=0;HaplotypeScore=0.7887;MQ=59.46;MQ0=0;MQRankSum=0.725;QD=13.19;ReadPosRankSum=1.102;SNPEFF_AMINO_ACID_CHANGE=H50R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_79093670_79094078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI44L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450498    GT:AD:DP:GQ:PL    0/1:25,26:51:99:703,0,789
1    79094081    rs1333973    T    A    319.32    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.502;DB;DP=46;Dels=0.0;FS=4.825;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.526;QD=6.94;ReadPosRankSum=-0.962;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI44L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452835    GT:AD:DP:GQ:PL    0/1:33,13:46:99:349,0,1085
1    79094593    rs273257    A    G    802.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI44L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452835    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:835,63,0
1    79095339    rs273256    A    C    209.99    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.115;QD=11.05;ReadPosRankSum=-2.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI44L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452835    GT:AD:DP:GQ:PL    0/1:11,8:19:99:240,0,398
1    79095581    rs987495    T    C    581.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.409;DB;DP=42;Dels=0.0;FS=1.216;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.277;QD=13.85;ReadPosRankSum=-0.327;SNPEFF_AMINO_ACID_CHANGE=I212T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_79095405_79095600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI44L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450498    GT:AD:DP:GQ:PL    0/1:21,21:42:99:612,0,571
1    79106899    rs273252    T    C    241.72    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=1.927;QD=16.11;ReadPosRankSum=-1.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI44L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459784    GT:AD:DP:GQ:PL    0/1:7,8:15:99:272,0,236
1    79128320    rs11577395    A    G    136.83    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.653;QD=7.2;ReadPosRankSum=0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IFI44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438486    GT:AD:DP:GQ:PL    0/1:11,7:18:99:167,0,410
1    79128570    rs3835474    G    GT    1116.37    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.944;DB;DP=54;FS=0.0;HRun=1;HaplotypeScore=117.1776;IndelType=I;MQ=59.98;MQ0=0;MQRankSum=0.704;QD=20.67;ReadPosRankSum=-1.808;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IFI44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438486    GT:AD:DP:GQ:PL    0/1:26,28:54:99:1155,0,885
1    79152433    rs12128384    T    C    40.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC104837.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408756    GT:AD:DP:GQ:PL    0/1:2,2:4:50.30:70,0,50
1    79152696    rs11804167    A    G    1313.71    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=94;Dels=0.0;FS=6.786;HRun=1;HaplotypeScore=1.999;MQ=60.0;MQ0=0;MQRankSum=-1.196;QD=13.98;ReadPosRankSum=-0.462;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC104837.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408756    GT:AD:DP:GQ:PL    0/1:49,45:94:99:1344,0,1618
1    79355596    rs1061728    A    G    916.74    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.971;DB;DP=60;Dels=0.0;FS=6.291;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.667;QD=15.28;ReadPosRankSum=-0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401034    GT:AD:DP:GQ:PL    0/1:28,32:60:99:947,0,822
1    79358743    rs10640737    C    CA    191.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.237;DB;DP=39;FS=0.0;HRun=17;HaplotypeScore=291.8189;IndelType=I;MQ=52.59;MQ0=0;MQRankSum=-1.54;QD=4.91;ReadPosRankSum=-1.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    1/1:26,6:39:6.18:232,6,0
1    79383300    rs5775467    CA    C    799.46    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=3.435;DB;DP=29;FS=0.0;HRun=2;HaplotypeScore=74.2514;IndelType=D;MQ=60.33;MQ0=0;MQRankSum=1.934;QD=27.57;ReadPosRankSum=-1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:5,24:29:99:838,0,138
1    79383458    rs12569007    A    T    2936.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.42;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2970,223,0
1    79386139    rs41312732    A    G    302.45    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-1.484;QD=13.75;ReadPosRankSum=-0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:12,10:22:99:332,0,405
1    79392446    rs59554507    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
1    79392756    rs12754818    C    A    1912.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_AMINO_ACID_CHANGE=V300L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_79392571_79392776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1946,150,0
1    79401927    rs61770681    A    G    4524.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=57.44;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    1/1:1,139:140:99:4525,346,0
1    79402199    rs79353007    T    C    132.44    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.0;QD=11.04;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:7,5:12:99:162,0,239
1    79402254    rs1489396    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    79403335    rs1352555    T    C    271.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:304,24,0
1    79403450    rs3811438    T    C    701.98    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=2.241;DB;DP=63;Dels=0.0;FS=1.592;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=11.14;ReadPosRankSum=0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:38,25:63:99:732,0,1316
1    79403751    rs985277    T    G    1027.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.32;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    1/1:0,34:34:81.26:1060,81,0
1    79404779    rs7526334    T    A    140.91    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=10.84;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:7,6:13:99:171,0,252
1    79411888    rs723898    T    C    261.13    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.62;QD=20.09;ReadPosRankSum=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:4,9:13:99:291,0,129
1    79411951    rs11162579    G    A    403.86    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.377;DB;DP=34;Dels=0.0;FS=6.808;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.612;QD=11.88;ReadPosRankSum=-2.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:20,14:34:99:434,0,545
1    79474385    rs12739018    C    G    80.44    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=16.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370742    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:110,0,30
1    82302403    rs17107279    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LPHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271029    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    82402364    rs146832818    TAATC    T    1005.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=125.2773;IndelType=D;MQ=45.91;MQ0=0;QD=50.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LPHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271029    GT:AD:DP:GQ:PL    1/1:1,19:19:54.19:1047,54,0
1    82415814    rs9438715    T    C    2509.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.37;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LPHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271029    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2543,190,0
1    82421596    rs11163397    C    T    1887.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.68;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=P544;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_82421561_82421744;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LPHN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370721    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1921,141,0
1    82436421    rs6598976    C    T    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LPHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468283    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    83698071    rs140513376    G    A    102.89    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.25;MQ0=1;MQRankSum=-0.896;QD=8.57;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,4:12:99:133,0,222
1    83698159    rs144255141    G    C    442.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.612;DB;DP=45;Dels=0.0;FS=1.243;HRun=1;HaplotypeScore=0.0;MQ=55.03;MQ0=4;MQRankSum=-0.748;QD=9.84;ReadPosRankSum=0.693;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,18:45:99:473,0,622
1    83920455    rs150970401    G    C    442.93    MQFilter40    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.245;DB;DP=113;Dels=0.0;FS=1.304;HRun=0;HaplotypeScore=0.0;MQ=18.79;MQ0=47;MQRankSum=2.067;QD=3.92;ReadPosRankSum=1.713;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-413G15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446227    GT:AD:DP:GQ:PL    0/1:73,40:113:99:473,0,655
1    84259364    rs112077743    ATT    A    497.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=15;HaplotypeScore=98.0887;IndelType=D;MQ=57.3;MQ0=0;QD=22.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-475O6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417975    GT:AD:DP:GQ:PL    1/1:1,20:22:62.73:540,63,0
1    84259660    rs17520771    C    A    3131.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.75;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL035706.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411299    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3164,244,0
1    84355418    rs11163862    T    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370704    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    84355734    rs71826512    AAGAACTTCAAGGAT    A    1835.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=256.2782;IndelType=D;MQ=38.07;MQ0=0;QD=96.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260505    GT:AD:DP:GQ:PL    1/1:3,16:19:48.16:1877,48,0
1    84365653    rs980418    T    G    172.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370703    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
1    84383491    rs12135028    T    C    173.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260505    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
1    84640691    rs582201    T    G    1685.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.24;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370679    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1718,129,0
1    84640834    rs12132002    T    G    396.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370679    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:430,33,0
1    84662712    rs2134649    T    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436133    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    84701251    rs600674    T    C    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370679    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    84791239    rs315555    T    C    425.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370668    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:458,36,0
1    84810345    rs186405    G    A    110.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370668    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:143,12,0
1    84810396    rs315528    A    C    833.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370668    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:866,66,0
1    84810815    rs315527    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370667    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    84864256    rs3738573    G    C    1383.20    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=116;Dels=0.0;FS=1.626;HRun=0;HaplotypeScore=0.8667;MQ=59.08;MQ0=0;MQRankSum=-0.292;QD=11.92;ReadPosRankSum=-0.621;SNPEFF_AMINO_ACID_CHANGE=Q3H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_84864215_84864372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370665    GT:AD:DP:GQ:PL    0/1:70,46:116:99:1413,0,2194
1    84867610    rs3754274    G    A    385.68    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.128;DB;DP=25;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.278;QD=15.43;ReadPosRankSum=1.55;SNPEFF_AMINO_ACID_CHANGE=R51K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_84867584_84867761;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370665    GT:AD:DP:GQ:PL    0/1:12,13:25:99:416,0,409
1    84873932    .    A    G    74.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370665    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,105
1    84874242    rs3116406    C    G    1234.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370662    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1267,93,0
1    84876711    rs3216015    C    CA    3125.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.0;HRun=8;HaplotypeScore=297.4498;IndelType=I;MQ=60.78;MQ0=0;QD=47.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370662    GT:AD:DP:GQ:PL    1/1:0,66:66:99:3168,199,0
1    84876731    rs1506700    T    G    1600.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.94;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370662    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1634,120,0
1    84878380    rs3116423    A    G    245.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370662    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
1    84880380    rs3768250    T    C    1618.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_AMINO_ACID_CHANGE=H305;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_84880211_84880701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370665    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1651,129,0
1    84944907    .    A    AG    243.34    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DP=11;FS=0.0;HRun=5;HaplotypeScore=22.6514;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=22.12;ReadPosRankSum=-0.382;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370654    GT:AD:DP:GQ:PL    0/1:3,8:11:62.88:282,0,63
1    84944989    rs2292191    A    G    277.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.307;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=0.995;QD=9.24;ReadPosRankSum=0.868;SNPEFF_AMINO_ACID_CHANGE=S9G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_84944950_84945192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370654    GT:AD:DP:GQ:PL    0/1:18,12:30:99:307,0,601
1    84946619    rs34688892    C    CT    729.40    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.543;DB;DP=80;FS=3.509;HRun=9;HaplotypeScore=244.5059;IndelType=I;MQ=59.41;MQ0=0;MQRankSum=-0.849;QD=9.12;ReadPosRankSum=-0.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370654    GT:AD:DP:GQ:PL    0/1:50,29:80:99:768,0,832
1    84946745    rs7413066    C    T    2033.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370654    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2067,168,0
1    84948540    rs17110157    A    G    214.17    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.825;DB;DP=32;Dels=0.0;FS=9.551;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.309;QD=6.69;ReadPosRankSum=-1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370654    GT:AD:DP:GQ:PL    0/1:21,11:32:99:244,0,789
1    84956161    rs11440073    C    CT    419.65    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.415;DB;DP=61;FS=7.526;HRun=11;HaplotypeScore=233.1529;IndelType=I;MQ=58.86;MQ0=0;MQRankSum=-0.011;QD=6.88;ReadPosRankSum=1.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370654    GT:AD:DP:GQ:PL    0/1:40,20:61:99:459,0,431
1    84961108    rs7528067    G    A    765.99    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=16.65;ReadPosRankSum=1.093;SNPEFF_AMINO_ACID_CHANGE=M223I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_84961056_84961138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370654    GT:AD:DP:GQ:PL    0/1:19,27:46:99:796,0,499
1    84963000    rs1246159    A    G    45.67    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=4.57;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370641    GT:AD:DP:GQ:PL    0/1:7,3:10:75.66:76,0,241
1    84971819    rs76421103    G    A    104.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=10.41;ReadPosRankSum=0.361;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487806    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,121
1    84971833    rs11163985    G    C    52.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=9;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=5.79;ReadPosRankSum=-0.684;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GNG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487806    GT:AD:DP:GQ:PL    0/1:4,5:9:82.06:82,0,87
1    84982259    rs2794218    T    C    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
1    84986213    rs5775789    AT    A    971.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=10;HaplotypeScore=107.8635;IndelType=D;MQ=60.23;MQ0=0;QD=23.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    1/1:2,39:41:99:1014,117,0
1    84986412    rs17110700    G    T    658.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.514;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.725;QD=14.31;ReadPosRankSum=-1.091;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    0/1:23,23:46:99:688,0,751
1    84991669    rs10493753    G    C    1859.68    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=1.274;DB;DP=113;Dels=0.0;FS=3.49;HRun=0;HaplotypeScore=1.9992;MQ=59.8;MQ0=0;MQRankSum=-0.438;QD=16.46;ReadPosRankSum=0.216;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    0/1:51,62:113:99:1890,0,1686
1    84998445    rs6690204    C    G    278.13    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.6;MQ0=0;MQRankSum=-0.578;QD=15.45;ReadPosRankSum=-0.133;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    0/1:8,10:18:99:308,0,283
1    84999571    rs10874451    T    C    196.05    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.122;QD=11.53;ReadPosRankSum=0.439;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    0/1:10,7:17:99:226,0,348
1    85009635    rs9782922    T    C    82.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.54;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:112,0,30
1    85011154    rs17111233    C    T    55.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=11.05;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    0/1:2,3:5:68.95:85,0,69
1    85011484    rs142405604    T    G    490.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.583;DB;DP=34;Dels=0.0;FS=15.933;HRun=0;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=14.43;ReadPosRankSum=-1.516;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263717    GT:AD:DP:GQ:PL    0/1:17,17:34:99:521,0,559
1    85016177    rs1400777    A    G    74.67    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=7.47;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370625    GT:AD:DP:GQ:PL    0/1:6,4:10:99:105,0,179
1    85020637    rs11801891    G    T    522.01    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.908;QD=14.91;ReadPosRankSum=-0.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477677    GT:AD:DP:GQ:PL    0/1:17,18:35:99:552,0,524
1    85020649    rs1043493    C    T    690.94    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.786;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.397;QD=15.02;ReadPosRankSum=-0.551;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477677    GT:AD:DP:GQ:PL    0/1:21,25:46:99:721,0,644
1    85036239    rs2303306    C    G    611.38    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.21;DB;DP=56;Dels=0.0;FS=3.856;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.545;QD=10.92;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370630    GT:AD:DP:GQ:PL    0/1:34,22:56:99:641,0,1074
1    85096589    rs12125951    T    G    118.37    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=16.91;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327308    GT:AD:DP:GQ:PL    0/1:1,6:7:27.18:148,0,27
1    85113203    rs2994949    T    C    1150.66    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.339;DB;DP=83;Dels=0.0;FS=1.832;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.028;QD=13.86;ReadPosRankSum=0.972;SNPEFF_AMINO_ACID_CHANGE=A559;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85109390_85113290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX2IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437941    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1181,0,1338
1    85128280    rs2994437    T    C    62.89    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.374;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=2.52;ReadPosRankSum=-0.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422026    GT:AD:DP:GQ:PL    0/1:20,5:25:92.88:93,0,732
1    85131982    rs3096445    T    G    242.35    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.041;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=10.1;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342203    GT:AD:DP:GQ:PL    0/1:15,9:24:99:272,0,536
1    85331808    .    G    GAGA    2638.19    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.212;DP=103;FS=3.294;HRun=0;HaplotypeScore=312.3165;IndelType=I;MQ=57.58;MQ0=0;MQRankSum=-1.411;QD=25.61;ReadPosRankSum=-1.524;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPAR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491034    GT:AD:DP:GQ:PL    0/1:57,44:103:99:2677,0,2019
1    85392324    rs6681025    C    T    300.10    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.603;DB;DP=22;Dels=0.0;FS=3.981;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=0.735;QD=13.64;ReadPosRankSum=1.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:9,13:22:99:330,0,264
1    85397286    rs34793286    G    C    736.37    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.798;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.33;QD=15.67;ReadPosRankSum=1.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:24,23:47:99:766,0,832
1    85405072    .    T    G    39.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:70,0,33
1    85417779    rs679961    G    A    71.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:103,9,0
1    85418307    rs677476    C    G    71.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.85;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:3,3:6:95.18:101,0,95
1    85422061    rs632545    C    T    549.90    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.173;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.411;QD=14.86;ReadPosRankSum=-0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:17,20:37:99:580,0,559
1    85422378    rs550766    T    C    184.26    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=16.75;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:4,7:11:99:214,0,137
1    85424182    rs673998    A    G    851.21    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=69;Dels=0.0;FS=1.02;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.527;QD=12.34;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:35,34:69:99:881,0,1167
1    85424479    rs674182    A    G    242.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=2.007;QD=17.32;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:6,8:14:99:273,0,199
1    85462582    rs11161503    C    G    333.45    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=0.894;DB;DP=29;Dels=0.0;FS=12.231;HRun=3;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.376;QD=11.5;ReadPosRankSum=2.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284027    GT:AD:DP:GQ:PL    0/1:18,11:29:99:363,0,409
1    85487520    rs10518327    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370587    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:72,0,28
1    85488030    rs2028304    G    A    929.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4959;MQ=59.38;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=L327;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85487982_85488083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341115    GT:AD:DP:GQ:PL    1/1:0,30:30:69.23:962,69,0
1    85488154    rs2039814    G    C    260.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370587    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:294,21,0
1    85511057    .    AAAC    A    193.02    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=3.241;DP=28;FS=0.0;HRun=0;HaplotypeScore=108.1921;IndelType=D;MQ=61.15;MQ0=0;MQRankSum=0.635;QD=6.89;ReadPosRankSum=-0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302814    GT:AD:DP:GQ:PL    0/1:21,7:28:99:232,0,903
1    85537502    rs4907131    T    A    474.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:508,39,0
1    85537522    rs4907132    T    C    932.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:966,72,0
1    85537890    rs7527292    G    A    129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
1    85538603    rs4907022    C    A    146.88    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=24.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:177,0,25
1    85538655    rs28417745    A    G    54.80    QDFilter2    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7092;MQ=47.12;MQ0=0;MQRankSum=2.946;QD=1.71;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:19,13:32:11.70:85,0,12
1    85538947    rs4907133    A    G    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
1    85547270    rs10782539    A    G    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    85547945    rs7534574    T    C    386.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:419,30,0
1    85550156    .    A    AAT    1016    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.838;DP=36;FS=0.0;HRun=0;HaplotypeScore=105.2412;IndelType=I;MQ=60.53;MQ0=0;MQRankSum=1.725;QD=28.22;ReadPosRankSum=-1.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:11,23:36:91.75:1055,0,92
1    85555672    rs1417351    A    C    272.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:305,24,0
1    85559118    rs11304107    CT    C    1419.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=7;HaplotypeScore=129.5975;IndelType=D;MQ=60.63;MQ0=0;QD=27.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:3,48:51:99:1461,144,0
1    85559396    rs41289039    G    C    484.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.166;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.38;MQ0=0;MQRankSum=-1.784;QD=16.15;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:15,15:30:99:514,0,531
1    85559452    rs709762    A    G    73.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=8.16;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:6,3:9:99:103,0,146
1    85559922    rs709763    C    G    206.37    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=17.2;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:5,7:12:99:236,0,164
1    85560264    rs709764    G    A    767.65    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.229;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9536;MQ=59.76;MQ0=0;MQRankSum=-0.554;QD=9.72;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:50,29:79:99:798,0,1640
1    85560313    rs709765    T    C    345.01    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.077;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.468;QD=8.63;ReadPosRankSum=-1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:26,14:40:99:375,0,877
1    85561546    rs709766    T    C    418.11    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.073;QD=15.49;ReadPosRankSum=-1.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:14,13:27:99:448,0,471
1    85561872    rs817596    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    85564138    rs817489    A    G    692.21    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.708;DB;DP=48;Dels=0.0;FS=7.952;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.14;QD=14.42;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:20,28:48:99:722,0,628
1    85564544    rs709770    C    T    82.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    85573705    rs11427716    A    ACT    404.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=39.9041;IndelType=I;MQ=60.98;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:3,6:11:32.03:446,32,0
1    85574021    rs709759    G    A    214.88    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=19.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:4,7:11:99:245,0,129
1    85583323    rs817471    T    A    962.10    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.977;DB;DP=73;Dels=0.0;FS=2.577;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.338;QD=13.18;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:40,33:73:99:992,0,1155
1    85589842    rs17121745    A    G    548.30    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.856;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.204;QD=14.82;ReadPosRankSum=-0.824;SNPEFF_AMINO_ACID_CHANGE=T635A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85589804_85589934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326813    GT:AD:DP:GQ:PL    0/1:19,18:37:99:578,0,607
1    85590031    rs817473    G    A    265.89    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.036;DB;DP=34;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=7.82;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:22,12:34:99:296,0,826
1    85592126    rs817474    G    T    464.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:498,36,0
1    85592619    rs709778    T    C    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
1    85594392    rs2305930    T    C    364.91    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=34;Dels=0.0;FS=4.314;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.058;QD=10.73;ReadPosRankSum=0.292;SNPEFF_AMINO_ACID_CHANGE=S55;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85594391_85594482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000484007    GT:AD:DP:GQ:PL    0/1:22,12:34:99:395,0,633
1    85594466    rs709783    G    A    777.44    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.54;MQ0=0;MQRankSum=-0.374;QD=15.55;ReadPosRankSum=0.172;SNPEFF_AMINO_ACID_CHANGE=R759H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85594391_85594482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326813    GT:AD:DP:GQ:PL    0/1:21,28:50:99:807,0,663
1    85594573    rs2305931    T    C    184.46    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=11.53;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:9,7:16:99:214,0,324
1    85598298    rs76081648    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484007    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    85598385    rs817477    T    C    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484007    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    85598527    rs5775826    TC    T    1522.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=8;HaplotypeScore=149.2048;IndelType=D;MQ=60.6;MQ0=0;QD=26.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484007    GT:AD:DP:GQ:PL    1/1:3,54:57:99:1564,162,0
1    85598679    .    T    TA    520.17    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.65;DP=69;FS=0.0;HRun=6;HaplotypeScore=182.6739;IndelType=I;MQ=59.67;MQ0=0;MQRankSum=0.672;QD=7.54;ReadPosRankSum=0.155;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_85598538_85598820;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR63;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000294664    GT:AD:DP:GQ:PL    0/1:50,19:69:99:559,0,1122
1    85624423    rs79898762    A    C    1136.50    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=105;Dels=0.0;FS=16.545;HRun=3;HaplotypeScore=2.4441;MQ=59.56;MQ0=0;MQRankSum=-0.101;QD=10.82;ReadPosRankSum=-0.749;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    0/1:47,58:105:99:1166,0,1549
1    85624549    rs709786    C    T    6059.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6483;MQ=59.72;MQ0=0;QD=36.95;SNPEFF_AMINO_ACID_CHANGE=V1157I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85622556_85624932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    1/1:1,162:164:99:6059,445,0
1    85624864    rs817412    G    A    6003.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8824;MQ=59.87;MQ0=0;QD=34.9;SNPEFF_AMINO_ACID_CHANGE=L1052;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85622556_85624932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    1/1:0,172:172:99:6003,448,0
1    85630015    rs817419    A    G    68.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=17.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:101,9,0
1    85647713    rs817444    T    C    2796.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2829,223,0
1    85648620    rs817443    C    T    5740.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.4512;MQ=59.34;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=V569I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85647781_85648883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    1/1:1,160:161:99:5740,430,0
1    85655916    rs56191061    G    A    3150.57    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.758;DB;DP=192;Dels=0.0;FS=5.233;HRun=1;HaplotypeScore=0.9832;MQ=59.52;MQ0=0;MQRankSum=0.915;QD=16.41;ReadPosRankSum=2.078;SNPEFF_AMINO_ACID_CHANGE=S422L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85655740_85656435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    0/1:89,103:192:99:3181,0,2764
1    85656596    rs12021868    T    C    76.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.74;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,105
1    85656680    rs817452    C    A    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYDE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341460    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    85724283    rs75989026    C    T    1216.03    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=80;Dels=0.0;FS=1.107;HRun=1;HaplotypeScore=2.8624;MQ=59.48;MQ0=0;MQRankSum=0.309;QD=15.2;ReadPosRankSum=-0.357;SNPEFF_AMINO_ACID_CHANGE=E133;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85724207_85724405;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf52;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344356    GT:AD:DP:GQ:PL    0/1:37,43:80:99:1246,0,1156
1    85741921    rs2735594    G    C    460.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271015    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:493,36,0
1    85742023    rs12037217    C    A    327.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.462;QD=15.59;ReadPosRankSum=0.959;SNPEFF_AMINO_ACID_CHANGE=A5S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_85741979_85742479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271015    GT:AD:DP:GQ:PL    0/1:9,12:21:99:357,0,220
1    85787114    rs233116    A    T    1558.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474200    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1592,120,0
1    86119898    rs2274738    A    G    245.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370574    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:278,21,0
1    86167957    rs1764298    C    T    655.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370574    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:689,51,0
1    86173298    rs1539444    C    T    1565.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370574    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1598,129,0
1    86210241    rs34348459    G    GT    406.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=4;HaplotypeScore=24.1693;IndelType=I;MQ=59.06;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:2,11:13:33.11:448,33,0
1    86210546    rs7547023    G    A    786.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:819,63,0
1    86211325    rs10747324    G    A    221.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:254,18,0
1    86246849    rs313722    A    C    1699.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1733,129,0
1    86249063    rs313724    C    T    925.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:959,72,0
1    86249911    rs313725    A    G    2617.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.7;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2650,199,0
1    86252025    rs12746325    A    G    2435.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2469,190,0
1    86289082    rs1842579    C    T    124.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    86307111    .    T    C    59.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-0.727;QD=14.79;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:89,0,29
1    86308225    rs1010058    C    A    147.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:180,15,0
1    86313536    rs1962482    G    T    208.78    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8737;MQ=60.0;MQ0=0;MQRankSum=0.965;QD=14.91;ReadPosRankSum=1.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:6,8:14:99:239,0,207
1    86340262    rs12136023    C    A    561.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:595,45,0
1    86340523    rs1564518    T    C    81.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:114,12,0
1    86340524    rs1564517    G    A    81.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:114,12,0
1    86340705    rs2086495    G    T    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
1    86340794    rs1564516    T    C    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
1    86340880    rs1564515    A    G    618.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:651,48,0
1    86341153    rs12122234    G    A    163.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
1    86361384    rs4912449    C    T    126.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
1    86361802    rs7541806    C    G    173.48    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.289;QD=11.57;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:8,7:15:99:203,0,240
1    86362184    rs71954147    A    AT    80.02    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=15;FS=0.0;HRun=12;HaplotypeScore=71.5676;IndelType=I;MQ=61.43;MQ0=0;MQRankSum=-0.361;QD=5.33;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:9,6:15:60.55:119,0,61
1    86375654    rs1502657    C    G    1900.88    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=3.889;DB;DP=155;Dels=0.0;FS=5.94;HRun=2;HaplotypeScore=1.367;MQ=59.85;MQ0=0;MQRankSum=0.268;QD=12.26;ReadPosRankSum=-0.489;SNPEFF_AMINO_ACID_CHANGE=P883;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86375633_86375686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:83,71:155:99:1931,0,2451
1    86430753    rs183034973    A    G    435.11    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=42;Dels=0.0;FS=4.525;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=10.36;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:25,17:42:99:465,0,790
1    86435957    .    T    TA    747.45    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.155;DP=83;FS=0.0;HRun=13;HaplotypeScore=324.8395;IndelType=I;MQ=58.16;MQ0=0;MQRankSum=-0.353;QD=9.01;ReadPosRankSum=1.622;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:43,35:83:99:786,0,274
1    86453237    rs11799965    T    G    216.14    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.477;DB;DP=47;Dels=0.0;FS=3.812;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.858;QD=4.6;ReadPosRankSum=0.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:35,12:47:99:246,0,1167
1    86453363    rs41287727    T    C    445.31    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.957;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=58.71;MQ0=0;MQRankSum=-0.834;QD=12.37;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:21,15:36:99:475,0,704
1    86482922    rs557928    A    T    141.91    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=11;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=12.9;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:5,6:11:99:172,0,138
1    86482958    rs17128726    T    A    71.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=7.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:5,4:9:99:101,0,146
1    86487981    rs516213    G    A    1725.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7845;MQ=52.83;MQ0=2;QD=25.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,69:69:99:1759,135,0
1    86487992    rs5775882    A    AACAG    3740.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=0;HaplotypeScore=392.0871;IndelType=I;MQ=51.17;MQ0=2;QD=62.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:12,45:58:99:3740,144,0
1    86488232    rs641712    G    A    585.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.25;DB;DP=35;Dels=0.0;FS=1.421;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=0.283;QD=16.72;ReadPosRankSum=0.883;SNPEFF_AMINO_ACID_CHANGE=P731S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86488221_86488274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:15,20:35:99:615,0,440
1    86497769    rs582141    C    G    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
1    86554813    rs66572310    G    GA    704.68    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=5.94;DB;DP=49;FS=0.0;HRun=8;HaplotypeScore=256.0521;IndelType=I;MQ=58.58;MQ0=0;MQRankSum=0.693;QD=14.38;ReadPosRankSum=1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:26,22:49:99:744,0,492
1    86590582    rs80262773    A    G    675.47    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.96;DB;DP=58;Dels=0.0;FS=3.874;HRun=0;HaplotypeScore=1.8332;MQ=58.06;MQ0=0;MQRankSum=-0.552;QD=11.65;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=N479;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86590528_86591897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:32,25:58:99:705,0,898
1    86590915    rs2174767    G    A    2304.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=S368;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86590528_86591897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2337,172,0
1    86591036    rs56046090    G    T    793.66    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=73;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.57;MQ=59.37;MQ0=0;MQRankSum=0.465;QD=10.87;ReadPosRankSum=-0.006;SNPEFF_AMINO_ACID_CHANGE=T328K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86590528_86591897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:43,30:73:99:824,0,1468
1    86591837    rs11161747    G    A    309.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=22;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.05;ReadPosRankSum=-1.313;SNPEFF_AMINO_ACID_CHANGE=A61V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86590528_86591897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL24A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370571    GT:AD:DP:GQ:PL    0/1:11,11:22:99:339,0,364
1    86814743    rs272492    C    T    87.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294678    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    86818572    rs272496    T    C    2432.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=E128;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86818542_86818667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000462648    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2465,181,0
1    86818813    rs272497    T    C    211.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=30.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463933    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
1    86818846    rs272498    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463933    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    86820267    rs1182098    C    T    2768.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_AMINO_ACID_CHANGE=E411;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86820213_86820375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394731    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2801,205,0
1    86821194    rs111830162    A    ACT    668.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=51.7095;IndelType=I;MQ=59.13;MQ0=0;QD=47.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463933    GT:AD:DP:GQ:PL    1/1:1,13:14:39.13:711,39,0
1    86821974    rs1182099    T    A    355.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463933    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:388,30,0
1    86822335    .    A    C    219.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DP=12;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=18.31;ReadPosRankSum=0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463933    GT:AD:DP:GQ:PL    0/1:4,8:12:99:250,0,119
1    86838158    rs421105    C    T    447.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=26.35;SNPEFF_AMINO_ACID_CHANGE=V122;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86838114_86838223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479890    GT:AD:DP:GQ:PL    1/1:0,17:17:36.10:481,36,0
1    86847955    rs272516    G    A    919.79    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.798;DB;DP=63;Dels=0.0;FS=4.433;HRun=0;HaplotypeScore=3.9297;MQ=58.15;MQ0=0;MQRankSum=0.451;QD=14.6;ReadPosRankSum=-0.037;SNPEFF_AMINO_ACID_CHANGE=A198;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86847925_86848041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294678    GT:AD:DP:GQ:PL    0/1:31,32:63:99:950,0,877
1    86849084    rs272518    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478286    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    86850624    rs2273941    T    G    33.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.83;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478286    GT:AD:DP:GQ:PL    0/1:4,3:7:63.82:64,0,151
1    86852621    rs2390096    A    G    997.22    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.518;DB;DP=77;Dels=0.0;FS=11.574;HRun=0;HaplotypeScore=3.2595;MQ=59.4;MQ0=0;MQRankSum=1.739;QD=12.95;ReadPosRankSum=-0.528;SNPEFF_AMINO_ACID_CHANGE=C30;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86852598_86852769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294678    GT:AD:DP:GQ:PL    0/1:43,34:77:99:1027,0,1180
1    86890931    rs1158505    T    A    268.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.249;QD=12.76;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370565    GT:AD:DP:GQ:PL    0/1:9,12:21:99:298,0,287
1    86891005    rs1158506    C    A    577.57    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.199;DB;DP=32;Dels=0.0;FS=1.47;HRun=0;HaplotypeScore=2.4993;MQ=60.0;MQ0=0;MQRankSum=0.759;QD=18.05;ReadPosRankSum=0.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370565    GT:AD:DP:GQ:PL    0/1:12,20:32:99:608,0,379
1    86891179    rs2210641    T    C    613.04    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7969;MQ=59.54;MQ0=0;MQRankSum=-0.225;QD=14.95;ReadPosRankSum=-0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370565    GT:AD:DP:GQ:PL    0/1:17,24:41:99:643,0,525
1    86894371    rs1334147    G    T    142.41    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.82;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439777    GT:AD:DP:GQ:PL    0/1:3,5:8:99:172,0,104
1    86894496    rs2151709    T    C    40.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.05;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439777    GT:AD:DP:GQ:PL    0/1:2,2:4:63.22:70,0,63
1    86896354    rs4292929    G    A    215.86    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.666;QD=23.98;ReadPosRankSum=-0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439777    GT:AD:DP:GQ:PL    0/1:2,7:9:55.57:246,0,56
1    86896541    rs3737672    G    A    1543.19    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.554;DB;DP=99;Dels=0.0;FS=0.769;HRun=0;HaplotypeScore=1.9963;MQ=59.81;MQ0=0;MQRankSum=0.564;QD=15.59;ReadPosRankSum=0.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439777    GT:AD:DP:GQ:PL    0/1:47,52:99:99:1573,0,1324
1    86897973    rs1334150    T    C    525.41    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.293;QD=16.95;ReadPosRankSum=0.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439777    GT:AD:DP:GQ:PL    0/1:13,18:31:99:555,0,433
1    86898315    rs3737159    T    C    173.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=14.46;ReadPosRankSum=-0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439777    GT:AD:DP:GQ:PL    0/1:4,8:12:99:204,0,139
1    86913265    rs2275001    C    T    1234.67    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=80;Dels=0.0;FS=3.51;HRun=0;HaplotypeScore=3.3787;MQ=59.48;MQ0=0;MQRankSum=-1.153;QD=15.43;ReadPosRankSum=0.681;SNPEFF_AMINO_ACID_CHANGE=R596;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86913191_86913461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370565    GT:AD:DP:GQ:PL    0/1:37,43:80:99:1265,0,812
1    86920904    rs2390057    A    G    835.68    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DB;DP=81;Dels=0.0;FS=4.57;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=10.32;ReadPosRankSum=0.624;SNPEFF_AMINO_ACID_CHANGE=Q842;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86920768_86922241;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370565    GT:AD:DP:GQ:PL    0/1:48,33:81:99:866,0,1705
1    86934966    rs1321697    C    A    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.97;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:66,0,65
1    86938908    rs2753378    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    86939130    rs2145412    C    T    2121.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_AMINO_ACID_CHANGE=L65F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86939100_86939240;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2154,160,0
1    86939390    rs2180762    G    A    1807.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1841,144,0
1    86947747    rs1321695    C    A    100.19    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.04;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    0/1:1,4:5:22.78:130,0,23
1    86947975    rs1321694    A    T    589.57    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=37;Dels=0.0;FS=5.297;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=15.93;ReadPosRankSum=0.167;SNPEFF_AMINO_ACID_CHANGE=V215;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86947888_86948065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    0/1:18,19:37:99:620,0,518
1    86952324    rs2734705    A    G    887    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.705;DB;DP=72;Dels=0.0;FS=8.085;HRun=0;HaplotypeScore=2.5224;MQ=59.03;MQ0=0;MQRankSum=-0.329;QD=12.32;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=N357S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86952209_86952436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    0/1:40,32:72:99:917,0,1235
1    86952601    rs2075630    A    G    32.46    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.64;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    0/1:5,2:7:62.45:62,0,183
1    86954591    rs2075632    T    C    201.28    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.466;QD=10.59;ReadPosRankSum=-0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    0/1:11,8:19:99:231,0,363
1    86956785    rs2753342    C    G    76.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
1    86959014    rs2753346    T    C    338.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:371,30,0
1    86959173    rs2791494    T    C    1590.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=29.45;SNPEFF_AMINO_ACID_CHANGE=M237T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86959067_86959282;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539889    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1623,126,0
1    86959796    rs1321689    C    T    885.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:919,69,0
1    86964075    rs2753356    T    G    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    86964131    rs11302985    CT    C    335.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=21.8176;IndelType=D;MQ=57.9;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:378,27,0
1    86965419    rs1882753    T    C    588.86    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.113;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.046;QD=8.79;ReadPosRankSum=-1.206;SNPEFF_AMINO_ACID_CHANGE=T812;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_86965337_86965942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234701    GT:AD:DP:GQ:PL    0/1:43,24:67:99:619,0,1449
1    87025819    rs2231582    T    C    693.16    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.569;DB;DP=53;Dels=0.0;FS=2.305;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=13.08;ReadPosRankSum=-0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263723    GT:AD:DP:GQ:PL    0/1:31,22:53:99:723,0,1016
1    87031308    rs2231589    C    T    102.75    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.42;ReadPosRankSum=2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263723    GT:AD:DP:GQ:PL    0/1:4,5:9:99:133,0,120
1    87036746    rs772599    C    A    1739.52    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=138;Dels=0.0;FS=3.263;HRun=1;HaplotypeScore=3.607;MQ=60.0;MQ0=0;MQRankSum=-1.787;QD=12.61;ReadPosRankSum=0.957;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263723    GT:AD:DP:GQ:PL    0/1:75,63:138:99:1770,0,2253
1    87036946    rs2231595    C    T    672.53    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=4.827;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.45;MQ0=0;MQRankSum=0.227;QD=16.01;ReadPosRankSum=1.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263723    GT:AD:DP:GQ:PL    0/1:19,23:42:99:703,0,520
1    87038240    rs2231597    T    C    441.90    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.411;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=17.68;ReadPosRankSum=2.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263723    GT:AD:DP:GQ:PL    0/1:11,14:25:99:472,0,373
1    87045896    rs138660049    TCCTACA    T    498.15    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=3.933;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=184.8079;IndelType=D;MQ=55.1;MQ0=0;MQRankSum=-2.045;QD=16.07;ReadPosRankSum=-0.562;SNPEFF_AMINO_ACID_CHANGE=PT877-;SNPEFF_CODON_CHANGE=cctaca/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_1_87045625_87046437;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370563    GT:AD:DP:GQ:PL    0/1:20,11:31:99:537,0,1363
1    87099909    rs12745600    A    G    197.19    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.772;DB;DP=15;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.34;QD=13.15;ReadPosRankSum=-1.791;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP4-651E10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456587    GT:AD:DP:GQ:PL    0/1:7,8:15:99:227,0,235
1    87101245    rs2292831    A    G    1521.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCA3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284054    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1554,114,0
1    87101375    rs2292830    C    G    2264.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.367;DB;DP=66;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.945;QD=34.31;ReadPosRankSum=-1.732;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLCA3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284054    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2298,133,0
1    87185449    rs263465    T    G    85.04    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=6.54;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212369    GT:AD:DP:GQ:PL    0/1:8,5:13:99:115,0,294
1    87189896    rs12755853    G    T    232.83    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.059;QD=14.55;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212369    GT:AD:DP:GQ:PL    0/1:7,9:16:99:263,0,205
1    87200729    rs263483    C    G    295.56    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.116;QD=10.56;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212369    GT:AD:DP:GQ:PL    0/1:16,12:28:99:326,0,589
1    87207800    rs166415    G    T    144.57    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.06;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212369    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,100
1    87207872    rs263478    G    T    362.19    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=4.295;DB;DP=28;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.995;QD=12.94;ReadPosRankSum=0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212369    GT:AD:DP:GQ:PL    0/1:14,13:28:99:392,0,416
1    87208953    rs7805    T    A    735.82    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.236;DB;DP=45;Dels=0.0;FS=3.108;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.374;QD=16.35;ReadPosRankSum=0.942;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482504    GT:AD:DP:GQ:PL    0/1:22,23:45:99:766,0,754
1    87251079    rs566334    A    G    960.69    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=74;Dels=0.0;FS=0.897;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-5.385;QD=12.98;ReadPosRankSum=-1.676;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP4-612B15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447415    GT:AD:DP:GQ:PL    0/1:34,40:74:99:991,0,1043
1    87368917    rs573680    A    G    542.11    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.042;DB;DP=43;Dels=0.0;FS=1.684;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.868;QD=12.61;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-604K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331835    GT:AD:DP:GQ:PL    0/1:24,19:43:99:572,0,791
1    87369176    rs571015    C    T    838.59    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=2.264;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=18.64;ReadPosRankSum=0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-604K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331835    GT:AD:DP:GQ:PL    0/1:19,26:45:99:869,0,577
1    87458695    rs10873810    G    A    381.67    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.476;DB;DP=40;Dels=0.0;FS=3.223;HRun=0;HaplotypeScore=0.8321;MQ=58.84;MQ0=0;MQRankSum=0.014;QD=9.54;ReadPosRankSum=-1.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370550    GT:AD:DP:GQ:PL    0/1:22,18:40:99:412,0,671
1    87458742    rs61771748    A    G    702.17    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.394;DB;DP=55;Dels=0.0;FS=1.035;HRun=2;HaplotypeScore=0.9789;MQ=59.24;MQ0=0;MQRankSum=0.937;QD=12.77;ReadPosRankSum=-1.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370550    GT:AD:DP:GQ:PL    0/1:26,29:55:99:732,0,820
1    87538962    rs1539610    G    A    354.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=22;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.591;QD=16.1;ReadPosRankSum=-0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356813    GT:AD:DP:GQ:PL    0/1:11,11:22:99:384,0,334
1    87549858    rs2798675    A    G    804.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356813    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:838,63,0
1    87558066    rs66709085    CCACATA    C    488.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=55.9867;IndelType=D;MQ=36.72;MQ0=0;QD=61.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356813    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:531,24,0
1    87563668    rs1199677    G    A    595.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356813    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:629,45,0
1    87570398    rs1621247    G    A    118.73    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.183;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.493;QD=6.6;ReadPosRankSum=-1.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356813    GT:AD:DP:GQ:PL    0/1:13,5:18:99:149,0,481
1    87599697    rs6576865    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_AMINO_ACID_CHANGE=T307;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_87599648_87602334;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356813    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    87633761    rs10782593    C    T    170.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.278;QD=14.18;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS2ST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370548    GT:AD:DP:GQ:PL    0/1:4,8:12:99:200,0,130
1    89225976    rs430600    T    C    2895.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=L141;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89225905_89226059;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316005    GT:AD:DP:GQ:PL    1/1:1,86:87:99:2929,235,0
1    89236029    rs7541301    T    A    717.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=23.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316005    GT:AD:DP:GQ:PL    1/1:0,31:31:63.19:750,63,0
1    89250152    rs1772795    G    A    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316005    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    89271574    rs786906    T    C    2221.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.367;QD=33.66;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S233;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89271574_89271700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544045    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2255,144,0
1    89322982    rs2794318    G    A    1923.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=38.47;SNPEFF_AMINO_ACID_CHANGE=L242;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89322889_89323170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370500    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1956,147,0
1    89353210    .    GTTATT    G    1301.73    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=5.425;DP=42;FS=4.457;HRun=0;HaplotypeScore=232.3964;IndelType=D;MQ=56.89;MQ0=0;MQRankSum=-1.169;QD=30.99;ReadPosRankSum=-0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370500    GT:AD:DP:GQ:PL    0/1:18,24:42:99:1341,0,1562
1    89426260    rs2765527    T    C    1728.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=33.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370486    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1762,132,0
1    89473175    rs1409150    T    C    98.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=12.28;ReadPosRankSum=2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235878    GT:AD:DP:GQ:PL    0/1:4,4:8:99:128,0,134
1    89474818    rs17433780    A    G    369.10    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.711;DB;DP=30;Dels=0.0;FS=4.439;HRun=0;HaplotypeScore=1.7781;MQ=60.0;MQ0=0;MQRankSum=0.837;QD=12.3;ReadPosRankSum=-1.046;SNPEFF_AMINO_ACID_CHANGE=C459R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89474630_89474823;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370482    GT:AD:DP:GQ:PL    0/1:17,13:30:99:399,0,534
1    89475135    rs10493821    C    T    1647.43    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=107;Dels=0.0;FS=6.225;HRun=0;HaplotypeScore=0.9665;MQ=57.0;MQ0=0;MQRankSum=-0.296;QD=15.4;ReadPosRankSum=0.628;SNPEFF_AMINO_ACID_CHANGE=V437M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89475075_89475177;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370482    GT:AD:DP:GQ:PL    0/1:46,61:107:99:1677,0,1253
1    89475230    rs4142706    T    G    702.59    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.485;DB;DP=37;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=0.0;MQ=54.89;MQ0=0;MQRankSum=-0.799;QD=18.99;ReadPosRankSum=0.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235878    GT:AD:DP:GQ:PL    0/1:14,23:37:99:733,0,466
1    89478854    rs4656076    C    G    1520.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=37.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475853    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1553,114,0
1    89479063    rs4656077    G    A    2017.83    PASS    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=3.499;DB;DP=168;Dels=0.0;FS=4.708;HRun=0;HaplotypeScore=2.3839;MQ=59.18;MQ0=0;MQRankSum=-0.204;QD=11.94;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=R225W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89478868_89479110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000235878    GT:AD:DP:GQ:PL    0/1:100,67:168:99:2048,0,2991
1    89479074    rs4656078    C    T    1920.31    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=5.652;DB;DP=159;Dels=0.0;FS=3.991;HRun=1;HaplotypeScore=3.1357;MQ=59.27;MQ0=0;MQRankSum=0.663;QD=12.08;ReadPosRankSum=0.895;SNPEFF_AMINO_ACID_CHANGE=R221Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89478868_89479110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000235878    GT:AD:DP:GQ:PL    0/1:97,62:159:99:1950,0,2745
1    89479758    rs3795543    T    C    2567.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=59.51;MQ0=0;QD=30.57;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000370482    GT:AD:DP:GQ:PL    1/1:1,83:84:99:2601,196,0
1    89520329    rs72054220    GAAAAAC    G    3320.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=0;HaplotypeScore=387.0369;IndelType=D;MQ=41.07;MQ0=0;QD=50.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459831    GT:AD:DP:GQ:PL    1/1:2,64:54:99:3321,154,0
1    89520574    rs10922554    C    A    6609.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.7;MQ0=0;QD=36.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459831    GT:AD:DP:GQ:PL    1/1:0,179:179:99:6609,488,0
1    89520636    rs10922555    G    A    2430.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.49;MQ0=2;QD=34.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459831    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2464,190,0
1    89520643    rs10922556    C    T    2100.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.19;MQ0=5;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459831    GT:AD:DP:GQ:PL    1/1:4,62:66:99:2134,163,0
1    89522512    rs4376712    C    T    2199.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.6;MQ0=0;QD=37.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459831    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2233,163,0
1    89522646    rs1048425    G    C    2663.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7863;MQ=59.05;MQ0=0;QD=35.05;SNPEFF_AMINO_ACID_CHANGE=T312S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89522537_89522817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542693    GT:AD:DP:GQ:PL    1/1:0,75:76:99:2697,208,0
1    89524068    rs1328225    T    C    839.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469194    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:873,66,0
1    89524657    rs17130717    C    G    975.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.651;DB;DP=72;Dels=0.0;FS=5.455;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.259;QD=13.55;ReadPosRankSum=-0.328;SNPEFF_AMINO_ACID_CHANGE=E129D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89524524_89524726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542693    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1005,0,1139
1    89525679    rs1328227    A    G    498.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=29.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469194    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:531,48,0
1    89574026    rs1329119    G    A    897.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463660    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:930,69,0
1    89575677    rs2026043    T    C    199.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463660    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
1    89579941    rs2230338    T    C    1046.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.84;SNPEFF_AMINO_ACID_CHANGE=S303G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89579699_89579979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370466    GT:AD:DP:GQ:PL    1/1:0,38:38:84.26:1080,84,0
1    89582474    rs2297024    A    T    116.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370466    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
1    89582690    rs1803632    G    C    1385.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.05;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=P285A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89582675_89582917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370466    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1419,105,0
1    89583544    rs2209956    T    C    209.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=20.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370466    GT:AD:DP:GQ:PL    1/1:1,9:10:21.06:242,21,0
1    89597755    rs942442    T    C    885.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464839    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:918,72,0
1    89598214    rs942441    G    T    513.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:547,42,0
1    89599037    rs72728707    A    G    468.75    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=106;Dels=0.0;FS=0.928;HRun=0;HaplotypeScore=1.7653;MQ=54.91;MQ0=0;MQRankSum=-7.043;QD=4.42;ReadPosRankSum=4.744;SNPEFF_AMINO_ACID_CHANGE=S522;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89598941_89599134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    0/1:84,22:106:99:499,0,2771
1    89599070    rs151091316    T    C    458.28    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=101;Dels=0.0;FS=7.262;HRun=0;HaplotypeScore=0.0;MQ=54.64;MQ0=0;MQRankSum=-6.766;QD=4.54;ReadPosRankSum=-0.066;SNPEFF_AMINO_ACID_CHANGE=E511;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89598941_89599134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    0/1:78,22:101:99:488,0,2711
1    89599084    rs79037912    G    C    214.37    PASS    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.539;DB;DP=86;Dels=0.0;FS=2.853;HRun=0;HaplotypeScore=0.0;MQ=55.26;MQ0=0;MQRankSum=-5.539;QD=2.49;ReadPosRankSum=-2.506;SNPEFF_AMINO_ACID_CHANGE=Q507E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89598941_89599134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    0/1:71,14:86:99:244,0,2507
1    89607479    rs6666846    G    T    231.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:264,21,0
1    89607486    rs6658235    T    C    178.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:211,15,0
1    89614879    rs622861    T    C    336.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:370,27,0
1    89615702    rs619178    A    G    53.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    89615979    rs586609    C    T    1585.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.536;QD=29.91;ReadPosRankSum=0.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1618,103,0
1    89618471    .    AG    A    176.84    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.131;DP=35;FS=4.43;HRun=1;HaplotypeScore=249.1001;IndelType=D;MQ=54.63;MQ0=0;MQRankSum=-1.111;QD=5.05;ReadPosRankSum=-1.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    0/1:28,7:35:99:216,0,318
1    89618472    rs141790475    GAA    G    200.92    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.016;DB;DP=34;FS=7.499;HRun=16;HaplotypeScore=257.8541;IndelType=D;MQ=55.06;MQ0=0;MQRankSum=1.581;QD=5.91;ReadPosRankSum=-0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    0/1:23,8:34:69.35:240,0,69
1    89637578    rs676913    G    A    3952.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=T14I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89637429_89637637;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294671    GT:AD:DP:GQ:PL    1/1:0,122:122:99:3953,286,0
1    89650850    rs623134    A    T    527.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471938    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:561,42,0
1    89652078    rs608339    A    T    1029.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.48;MQ0=0;QD=22.37;SNPEFF_AMINO_ACID_CHANGE=L549M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89652016_89652209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355754    GT:AD:DP:GQ:PL    1/1:0,46:46:96.23:1062,96,0
1    89652094    rs1142887    G    A    824.51    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.4;MQ0=0;QD=21.7;SNPEFF_AMINO_ACID_CHANGE=A543;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89652016_89652209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355754    GT:AD:DP:GQ:PL    1/1:0,38:38:78.19:858,78,0
1    89652097    rs1142886    C    T    822.62    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.4;MQ0=0;QD=21.65;SNPEFF_AMINO_ACID_CHANGE=M542I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89652016_89652209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355754    GT:AD:DP:GQ:PL    1/1:0,38:38:78.19:856,78,0
1    89652102    rs655260    A    T    724.20    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.67;MQ0=0;QD=18.57;SNPEFF_AMINO_ACID_CHANGE=Y541N;SNPEFF_CODON_CHANGE=Tac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89652016_89652209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355754    GT:AD:DP:GQ:PL    1/1:0,39:39:69.16:757,69,0
1    89655681    rs75815237    C    T    371.88    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.455;QD=10.33;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355754    GT:AD:DP:GQ:PL    0/1:22,14:36:99:402,0,726
1    89661228    rs650448    T    G    332.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355754    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:365,27,0
1    89664276    rs493470    T    C    212.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355754    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
1    89726592    rs535351    G    A    414.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443807    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:447,33,0
1    89727870    rs76346754    A    T    931.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.815;DB;DP=62;Dels=0.0;FS=2.725;HRun=0;HaplotypeScore=0.734;MQ=59.63;MQ0=0;MQRankSum=0.483;QD=15.03;ReadPosRankSum=-0.974;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443807    GT:AD:DP:GQ:PL    0/1:31,31:62:99:962,0,1073
1    89728147    .    T    C    207.31    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.892;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=14.81;ReadPosRankSum=1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443807    GT:AD:DP:GQ:PL    0/1:6,8:14:99:237,0,198
1    89730723    rs9628688    C    T    264.98    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=18.93;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343435    GT:AD:DP:GQ:PL    0/1:6,8:14:99:295,0,143
1    89731959    rs12729209    G    A    132.14    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=9.44;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343435    GT:AD:DP:GQ:PL    0/1:9,5:14:99:162,0,294
1    89732237    rs61729628    G    A    960.83    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.338;DB;DP=69;Dels=0.0;FS=4.853;HRun=0;HaplotypeScore=1.5226;MQ=59.73;MQ0=0;MQRankSum=2.353;QD=13.93;ReadPosRankSum=1.665;SNPEFF_AMINO_ACID_CHANGE=P220;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89732029_89732271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343435    GT:AD:DP:GQ:PL    0/1:37,32:69:99:991,0,1142
1    89733273    rs6690597    T    C    99.59    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=7.66;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343435    GT:AD:DP:GQ:PL    0/1:8,5:13:99:130,0,294
1    89845926    rs67367078    GT    G    1358.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=9;HaplotypeScore=134.9363;IndelType=D;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370456    GT:AD:DP:GQ:PL    1/1:3,51:54:99:1401,153,0
1    89846152    rs4582772    C    T    595.82    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=53;Dels=0.0;FS=8.511;HRun=0;HaplotypeScore=1.8666;MQ=60.0;MQ0=0;MQRankSum=0.539;QD=11.24;ReadPosRankSum=-0.123;SNPEFF_AMINO_ACID_CHANGE=T148I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89845945_89846190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535065    GT:AD:DP:GQ:PL    0/1:30,23:53:99:626,0,849
1    89847153    rs1001847    G    A    145.14    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.38;QD=11.16;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370456    GT:AD:DP:GQ:PL    0/1:8,5:13:99:175,0,170
1    89847372    rs4658359    G    T    1836.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=37.49;SNPEFF_AMINO_ACID_CHANGE=A201S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89847253_89847533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535065    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1870,141,0
1    89847411    rs4658360    C    T    1929.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=L214F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89847253_89847533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535065    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1962,153,0
1    89847444    rs4658146    A    G    1815.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.57;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=M225V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89847253_89847533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535065    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1849,144,0
1    89848557    rs10733091    A    C    284.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370456    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
1    89849201    rs928652    C    G    2410.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370456    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2443,184,0
1    89849350    rs928653    G    A    1071.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.2;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370456    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1104,81,0
1    89849441    rs928654    T    G    581.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370456    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:614,45,0
1    89849574    rs928655    G    A    736.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370456    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:770,57,0
1    89849742    rs959460    A    T    2330.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=D390V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_89849652_89849845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535065    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2363,175,0
1    89851100    rs67390517    G    GT    212.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.134;DB;DP=19;FS=0.0;HRun=14;HaplotypeScore=85.8705;IndelType=I;MQ=56.86;MQ0=0;MQRankSum=-1.47;QD=11.17;ReadPosRankSum=0.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464005    GT:AD:DP:GQ:PL    1/1:9,8:19:17.43:254,17,0
1    89888371    rs6428540    A    G    524.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.89;MQ0=0;QD=32.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394662    GT:AD:DP:GQ:PL    1/1:0,16:16:48.10:557,48,0
1    89888530    rs4261099    C    T    3096.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=42.62;MQ0=4;QD=31.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394662    GT:AD:DP:GQ:PL    1/1:2,96:98:99:3130,253,0
1    89888552    rs4282800    T    A    3503.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.4;MQ0=4;QD=32.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394662    GT:AD:DP:GQ:PL    1/1:2,107:109:99:3503,280,0
1    89888585    rs4415545    C    G    367.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=46.79;MQ0=4;QD=3.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394662    GT:AD:DP:GQ:PL    1/1:2,120:122:41.97:400,42,0
1    89888588    rs4506445    G    T    286.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=47.4;MQ0=4;QD=2.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBP1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394662    GT:AD:DP:GQ:PL    1/1:2,119:123:35.93:320,36,0
1    90048010    .    A    G    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330947    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
1    90048132    rs2279085    T    C    190.31    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=11.19;ReadPosRankSum=1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330947    GT:AD:DP:GQ:PL    0/1:10,7:17:99:220,0,356
1    90049040    rs36084789    A    G    1140.41    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.848;DB;DP=84;Dels=0.0;FS=0.849;HRun=0;HaplotypeScore=1.9995;MQ=59.67;MQ0=0;MQRankSum=0.519;QD=13.58;ReadPosRankSum=0.734;SNPEFF_AMINO_ACID_CHANGE=P277;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_90048184_90050348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330947    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1170,0,1388
1    90058242    rs34096201    G    GT    187.31    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=20;FS=0.0;HRun=13;HaplotypeScore=94.5555;IndelType=I;MQ=55.76;MQ0=0;MQRankSum=-0.146;QD=9.37;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330947    GT:AD:DP:GQ:PL    0/1:11,9:20:91.92:226,0,92
1    90178743    rs474536    A    G    2489.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=D205G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_90178268_90185092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370454    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2522,193,0
1    90470915    rs11808927    T    A    922    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF326;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340281    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:955,72,0
1    90475947    rs12086543    A    G    488.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF326;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361911    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:522,39,0
1    90486412    rs2816881    T    G    2351.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=V206;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_90486351_90486481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF326;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455342    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2384,178,0
1    90493026    rs10922744    G    A    3313.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=E299;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_90492913_90493375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF326;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455342    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3313,256,0
1    91181968    rs75698317    C    T    169.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.067;QD=18.88;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370445    GT:AD:DP:GQ:PL    0/1:3,6:9:51.84:200,0,52
1    91383589    rs2448020    T    G    1027    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF644;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337393    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1060,78,0
1    91402917    rs76869597    T    TA    420.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=11;HaplotypeScore=168.9682;IndelType=I;MQ=56.14;MQ0=0;QD=16.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF644;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498303    GT:AD:DP:GQ:PL    1/1:7,10:25:58.63:462,59,0
1    91408187    rs358693    C    A    806.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF644;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337393    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:839,63,0
1    91447985    rs358691    C    T    848.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF644;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337393    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:882,66,0
1    91728053    rs585898    G    A    5138.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_AMINO_ACID_CHANGE=A1036;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_91728038_91728149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370424    GT:AD:DP:GQ:PL    1/1:0,135:135:99:5139,376,0
1    91728202    rs555432    T    C    693.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=60.0;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    1/1:0,24:24:57.16:726,57,0
1    91731426    rs1822056    T    G    161.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370421    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
1    91739208    rs281964    C    T    741.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:775,57,0
1    91739414    rs281963    G    A    1152.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1185,93,0
1    91740105    rs176019    T    G    70.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:103,9,0
1    91779203    rs204304    T    C    176.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497520    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:209,18,0
1    91781304    rs281991    T    C    518.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=28.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497520    GT:AD:DP:GQ:PL    1/1:0,18:18:51.13:552,51,0
1    91781413    rs281992    T    G    1522.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_AMINO_ACID_CHANGE=I1033;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_91781372_91781529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370425    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1556,120,0
1    91782117    .    TA    T    79.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DP=8;FS=0.0;HRun=12;HaplotypeScore=19.6708;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=9.95;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    0/1:2,6:8:9.53:118,0,10
1    91793877    rs281972    T    C    129.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
1    91794091    rs7541566    G    C    449.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.879;DB;DP=27;Dels=0.0;FS=1.574;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.366;QD=16.66;ReadPosRankSum=0.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    0/1:12,15:27:99:480,0,315
1    91794248    rs281973    G    A    1079.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    1/1:0,33:33:87.25:1112,87,0
1    91813184    rs281936    C    T    296.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294696    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
1    91840784    rs282037    T    C    332.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481900    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
1    91841301    rs282036    T    C    2530.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448819    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2564,190,0
1    91846374    rs282033    C    A    642.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427444    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:675,54,0
1    91846595    rs11448402    T    TA    2797.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.0;HRun=1;HaplotypeScore=175.1657;IndelType=I;MQ=60.79;MQ0=0;QD=43.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427444    GT:AD:DP:GQ:PL    1/1:1,64:65:99:2840,193,0
1    91846654    rs282032    A    T    779.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.54;MQ0=0;QD=38.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427444    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:813,60,0
1    91851253    rs282026    T    C    1547.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=Q169;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_91851171_91851391;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427444    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1581,123,0
1    91859795    rs282009    T    C    2112.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=I117V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_91859650_91859959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HFM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370425    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2146,154,0
1    91967142    rs78219884    G    GC    1844.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=1;HaplotypeScore=102.5905;IndelType=I;MQ=61.26;MQ0=0;QD=41.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234626    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1887,132,0
1    91973557    rs553606    T    G    1916.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234626    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1950,153,0
1    91989572    rs488126    T    G    1163.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486509    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1197,93,0
1    92107937    rs4658107    C    T    673.94    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.721;DB;DP=59;Dels=0.0;FS=2.184;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.281;QD=11.42;ReadPosRankSum=-0.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HSP90B3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370405    GT:AD:DP:GQ:PL    0/1:31,28:59:99:704,0,1021
1    92108274    rs142096840    T    TA    375.61    PASS    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=0.091;DB;DP=61;FS=1.216;HRun=13;HaplotypeScore=271.7547;IndelType=I;MQ=55.43;MQ0=0;MQRankSum=0.274;QD=6.16;ReadPosRankSum=-0.065;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HSP90B3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370405    GT:AD:DP:GQ:PL    0/1:39,20:61:99:415,0,282
1    92108899    rs2493202    C    T    4763.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=34.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HSP90B3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370405    GT:AD:DP:GQ:PL    1/1:0,139:140:99:4763,358,0
1    92174260    rs284878    A    G    2238.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.66;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=T748;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92174220_92174340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370399    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2271,166,0
1    92177938    rs1805113    A    G    523.21    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=53;Dels=0.0;FS=5.993;HRun=2;HaplotypeScore=1.8633;MQ=60.0;MQ0=0;MQRankSum=-0.391;QD=9.87;ReadPosRankSum=-0.7;SNPEFF_AMINO_ACID_CHANGE=F675;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92177800_92178099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370399    GT:AD:DP:GQ:PL    0/1:32,21:53:99:553,0,1022
1    92185185    rs2279455    T    C    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.86;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529608    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,109
1    92185657    rs1805112    C    T    1004.16    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=4.018;DB;DP=61;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.955;QD=16.46;ReadPosRankSum=0.62;SNPEFF_AMINO_ACID_CHANGE=P401;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92185450_92185784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370399    GT:AD:DP:GQ:PL    0/1:26,35:61:99:1034,0,676
1    92195601    rs10783002    G    A    205.43    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.656;QD=15.8;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    0/1:6,7:13:99:235,0,212
1    92195746    rs10783003    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
1    92200111    rs2306886    G    A    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
1    92200593    rs11165376    A    G    749.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:783,60,0
1    92200627    rs10874913    T    C    505.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:539,48,0
1    92200634    rs11165377    C    T    148.65    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.533;QD=10.62;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    0/1:6,8:14:99:179,0,174
1    92200753    rs12069138    G    T    96.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
1    92200782    rs12069176    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    92223976    rs284176    A    G    504.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:538,45,0
1    92262874    rs58760640    T    C    1267.89    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.536;DB;DP=130;Dels=0.0;FS=1.466;HRun=2;HaplotypeScore=2.6232;MQ=59.65;MQ0=0;MQRankSum=-1.198;QD=9.75;ReadPosRankSum=-0.111;SNPEFF_AMINO_ACID_CHANGE=A72;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92262844_92263028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000212355    GT:AD:DP:GQ:PL    0/1:81,49:130:99:1298,0,2682
1    92428495    rs10783071    C    A    2371.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=Q62K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92428275_92428503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRDT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000362005    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2405,178,0
1    92446001    rs11165910    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRDT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423434    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
1    92446112    rs11165911    T    C    978.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=34.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRDT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423434    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1011,78,0
1    92446398    rs2303967    T    A    2186.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=33.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRDT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423434    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2219,172,0
1    92447004    rs10875104    A    G    405.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRDT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426141    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:438,33,0
1    92457843    rs10747493    C    T    752.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=P623L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92457821_92457871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRDT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370389    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:785,57,0
1    92467439    rs2303968    T    C    55.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRDT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362005    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
1    92508300    .    AG    A    98.03    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DP=25;FS=0.0;HRun=1;HaplotypeScore=218.7104;IndelType=D;MQ=53.62;MQ0=0;MQRankSum=0.462;QD=3.92;ReadPosRankSum=2.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370383    GT:AD:DP:GQ:PL    0/1:16,9:25:99:137,0,141
1    92568263    rs527412    A    G    727.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342818    GT:AD:DP:GQ:PL    1/1:0,26:26:60.18:761,60,0
1    92646021    rs1483022    G    A    389.12    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.3542;MQ=60.0;MQ0=0;MQRankSum=-0.431;QD=7.94;ReadPosRankSum=-0.536;SNPEFF_AMINO_ACID_CHANGE=K489;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92645822_92648152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1107;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370378    GT:AD:DP:GQ:PL    0/1:32,17:49:99:419,0,1111
1    92647223    rs560389    A    G    2251.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_AMINO_ACID_CHANGE=N890S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92645822_92648152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1107;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370378    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2285,172,0
1    92647532    rs565156    C    A    3106.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=37.42;SNPEFF_AMINO_ACID_CHANGE=T1048N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92645822_92648152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1107;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409154    GT:AD:DP:GQ:PL    1/1:0,83:83:99:3139,235,0
1    92647861    rs566576    G    A    861.48    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.207;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.67;MQ0=0;MQRankSum=-0.812;QD=12.49;ReadPosRankSum=0.74;SNPEFF_AMINO_ACID_CHANGE=V1103I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92645822_92648152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1107;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370378    GT:AD:DP:GQ:PL    0/1:37,32:69:99:891,0,1082
1    92649292    rs570368    A    T    911.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.06;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370378    GT:AD:DP:GQ:PL    1/1:0,25:25:75.22:945,75,0
1    92649312    rs72423767    G    GT    281.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.567;DB;DP=32;FS=4.337;HRun=15;HaplotypeScore=294.567;IndelType=I;MQ=49.0;MQ0=0;MQRankSum=-0.567;QD=8.52;ReadPosRankSum=-2.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370378    GT:AD:DP:GQ:PL    1/1:15,11:32:22.51:323,23,0
1    92649335    rs569593    A    G    926.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4892;MQ=54.74;MQ0=0;QD=19.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370378    GT:AD:DP:GQ:PL    1/1:1,41:47:78.23:959,78,0
1    92709689    rs10676893    T    TAC    416.82    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.94;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=54.4026;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.668;QD=18.95;ReadPosRankSum=1.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370360    GT:AD:DP:GQ:PL    0/1:13,9:22:99:456,0,531
1    92711067    rs3131827    A    T    420.74    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.734;DB;DP=35;Dels=0.0;FS=1.725;HRun=1;HaplotypeScore=2.5916;MQ=59.34;MQ0=0;MQRankSum=-0.555;QD=12.02;ReadPosRankSum=1.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370360    GT:AD:DP:GQ:PL    0/1:20,15:35:99:451,0,660
1    92711972    rs2046620    C    G    309.71    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.106;QD=14.75;ReadPosRankSum=0.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370373    GT:AD:DP:GQ:PL    0/1:11,10:21:99:340,0,351
1    92712266    rs974924    C    T    438.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370373    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:471,36,0
1    92712598    rs5776143    GAA    G    1174.04    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=6.195;DB;DP=82;FS=6.647;HRun=4;HaplotypeScore=282.5882;IndelType=D;MQ=59.69;MQ0=0;MQRankSum=-0.245;QD=14.32;ReadPosRankSum=0.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370373    GT:AD:DP:GQ:PL    0/1:49,33:82:99:1213,0,2405
1    92729446    rs3103176    C    T    164.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9736;MQ=58.05;MQ0=0;MQRankSum=-0.259;QD=13.7;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370360    GT:AD:DP:GQ:PL    0/1:6,6:12:99:194,0,173
1    92735273    rs61758979    A    T    432.67    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.253;DB;DP=45;Dels=0.0;FS=2.527;HRun=1;HaplotypeScore=1.5317;MQ=58.96;MQ0=0;MQRankSum=-0.656;QD=9.61;ReadPosRankSum=0.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370360    GT:AD:DP:GQ:PL    0/1:26,18:45:99:463,0,883
1    92735359    rs1487540    T    C    244.69    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=-0.165;QD=11.12;ReadPosRankSum=-0.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370360    GT:AD:DP:GQ:PL    0/1:12,10:22:99:275,0,411
1    92755943    rs3103178    G    A    292.50    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=20.89;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370360    GT:AD:DP:GQ:PL    0/1:5,9:14:99:322,0,168
1    92765848    rs1542685    A    T    447.27    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.375;DB;DP=29;Dels=0.0;FS=1.862;HRun=2;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.026;QD=15.42;ReadPosRankSum=-0.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370343    GT:AD:DP:GQ:PL    0/1:15,14:29:99:477,0,508
1    92767292    rs6604089    A    T    183.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.746;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.315;QD=8.73;ReadPosRankSum=0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370343    GT:AD:DP:GQ:PL    0/1:12,9:21:99:213,0,435
1    92852504    rs10747411    A    G    246.74    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.66;MQ0=0;MQRankSum=-1.733;QD=17.62;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370343    GT:AD:DP:GQ:PL    0/1:5,9:14:99:277,0,150
1    92946479    rs11164605    G    A    193.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=C155;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92946158_92946645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294702    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
1    92979354    rs6603979    A    G    2689.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.43;MQ0=0;QD=36.85;SNPEFF_AMINO_ACID_CHANGE=G764;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_92974253_92979527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370331    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2723,202,0
1    93029453    rs6656432    A    G    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370331    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
1    93029479    rs68039687    A    T    36.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.11;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370331    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:66,0,32
1    93071048    rs2050597    G    T    648.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468580    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:681,51,0
1    93073228    rs11808092    C    A    586.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.569;DB;DP=28;Dels=0.0;FS=4.262;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=20.96;ReadPosRankSum=-0.283;SNPEFF_AMINO_ACID_CHANGE=Q612H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_93073138_93073284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370331    GT:AD:DP:GQ:PL    0/1:9,18:28:99:617,0,264
1    93089823    rs7514716    T    C    2621.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=33.61;SNPEFF_AMINO_ACID_CHANGE=Q262;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_93089733_93089891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338689    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2655,202,0
1    93160002    rs34202284    G    A    217.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.654;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6385;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=14.48;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338689    GT:AD:DP:GQ:PL    0/1:7,7:15:99:247,0,257
1    93160902    rs2391199    T    C    2716.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_AMINO_ACID_CHANGE=I336V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_93160867_93161010;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370331    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2750,202,0
1    93163385    rs7418336    A    G    739.46    PASS    AB=0.289;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.8;DB;DP=38;Dels=0.0;FS=1.868;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=19.46;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338689    GT:AD:DP:GQ:PL    0/1:11,27:38:99:769,0,316
1    93163633    rs1017008    C    T    1296.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338689    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1329,102,0
1    93167610    rs10218567    C    T    254.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=36.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474806    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
1    93167854    rs10218670    A    G    296.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474806    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:330,24,0
1    93306317    rs10874744    G    A    304.26    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=26;Dels=0.0;FS=6.239;HRun=2;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;MQRankSum=-1.115;QD=11.7;ReadPosRankSum=1.605;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370310    GT:AD:DP:GQ:PL    0/1:12,13:26:99:334,0,395
1    93308798    rs2244588    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401027    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    93308853    rs2244496    C    A    385.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401027    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:418,33,0
1    93312142    rs12746956    A    G    700.16    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.79;DB;DP=59;Dels=0.0;FS=4.275;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=1.227;QD=11.87;ReadPosRankSum=-0.633;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000401027    GT:AD:DP:GQ:PL    0/1:32,27:59:99:730,0,952
1    93312192    rs71094209    C    CT    222.75    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.317;DB;DP=30;FS=3.388;HRun=11;HaplotypeScore=114.6692;IndelType=I;MQ=59.59;MQ0=0;MQRankSum=0.348;QD=7.42;ReadPosRankSum=1.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370321    GT:AD:DP:GQ:PL    0/1:20,10:30:99:262,0,230
1    93312592    rs12062315    C    T    100.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=14.42;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370310    GT:AD:DP:GQ:PL    0/1:3,4:7:96.29:131,0,96
1    93426866    rs945629    T    C    111.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=15.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370310    GT:AD:DP:GQ:PL    1/1:0,7:7:12.03:144,12,0
1    93426869    rs1415069    G    C    105.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=15.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370310    GT:AD:DP:GQ:PL    1/1:0,7:7:12.03:138,12,0
1    93545157    rs2815419    G    A    1143.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370298    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1176,90,0
1    93576302    rs494745    T    G    179.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370298    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:212,15,0
1    93580402    rs11164874    T    A    215.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=14.36;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370298    GT:AD:DP:GQ:PL    0/1:6,9:15:99:245,0,209
1    93580581    rs2815427    G    C    1025.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_AMINO_ACID_CHANGE=C140S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_93580545_93580645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370298    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1059,78,0
1    93580879    rs2295424    T    C    33.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.77;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370298    GT:AD:DP:GQ:PL    0/1:5,2:7:63.39:63,0,184
1    93580992    rs566843    C    T    222.88    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=18;Dels=0.0;FS=5.035;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.644;QD=12.38;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370298    GT:AD:DP:GQ:PL    0/1:10,8:18:99:253,0,290
1    93581024    rs2295423    T    C    280.80    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=13.37;ReadPosRankSum=-1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370298    GT:AD:DP:GQ:PL    0/1:10,11:21:99:311,0,304
1    93584870    rs74464389    C    CT    86.50    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=13;FS=3.424;HRun=14;HaplotypeScore=65.3042;IndelType=I;MQ=59.9;MQ0=0;MQRankSum=0.825;QD=6.65;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474314    GT:AD:DP:GQ:PL    0/1:7,6:13:63.35:126,0,63
1    93602194    rs2281524    C    T    1630.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487263    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1663,123,0
1    93620393    rs1060622    G    A    1291.26    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=0.414;DB;DP=97;Dels=0.0;FS=1.688;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.044;QD=13.31;ReadPosRankSum=-1.198;SNPEFF_AMINO_ACID_CHANGE=T124I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_93619857_93620445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535517    GT:AD:DP:GQ:PL    0/1:48,49:97:99:1321,0,1507
1    93621483    rs1057257    A    G    98.80    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.034;QD=8.98;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370280    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,249
1    93646207    rs2297707    T    C    140.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.779;QD=11.68;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=L40;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_93645920_93646439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000557479    GT:AD:DP:GQ:PL    0/1:6,6:12:99:170,0,209
1    93646418    rs10874763    C    T    301.94    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=21;Dels=0.0;FS=4.419;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.669;QD=14.38;ReadPosRankSum=0.739;SNPEFF_AMINO_ACID_CHANGE=L111F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_93645920_93646439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000557479    GT:AD:DP:GQ:PL    0/1:10,11:21:99:332,0,292
1    93648728    rs7535628    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    93648816    rs2815409    A    G    233.43    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=16.67;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:5,9:14:99:263,0,158
1    93649732    rs6682670    A    G    357.05    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.182;QD=22.32;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:4,12:16:99:387,0,120
1    93658989    rs11164881    C    A    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    93659350    rs2815411    A    T    543.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.42;MQ0=0;MQRankSum=-0.5;QD=13.58;ReadPosRankSum=1.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479653    GT:AD:DP:GQ:PL    0/1:20,20:40:99:573,0,638
1    93672723    rs2815413    A    C    520.97    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=39;Dels=0.0;FS=6.884;HRun=0;HaplotypeScore=0.734;MQ=59.41;MQ0=0;MQRankSum=1.986;QD=13.36;ReadPosRankSum=0.437;SNPEFF_AMINO_ACID_CHANGE=N125T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_93672664_93672955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338949    GT:AD:DP:GQ:PL    0/1:18,21:39:99:551,0,595
1    93676314    rs555161    A    G    142.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.447;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.32;QD=6.76;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:12,9:21:99:172,0,440
1    93676578    rs797676    A    G    104.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.46;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,212
1    93683210    rs624131    A    G    76.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:2,3:5:66.24:106,0,66
1    93683543    rs506556    C    G    147.90    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=12.32;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:5,7:12:99:178,0,173
1    93687091    rs797661    G    T    237.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=11.87;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:12,8:20:99:267,0,409
1    93691855    rs34227600    GT    G    126.83    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.981;DB;DP=49;FS=1.571;HRun=16;HaplotypeScore=291.5413;IndelType=D;MQ=55.11;MQ0=0;MQRankSum=0.377;QD=2.59;ReadPosRankSum=0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:32,9:49:99:166,0,308
1    93691871    .    TG    T    56.85    QDFilter2    AB=0.918;AC=1;AF=0.50;AN=2;BaseQRankSum=2.698;DP=56;FS=44.89;HRun=1;HaplotypeScore=305.1441;IndelType=D;MQ=56.18;MQ0=0;MQRankSum=-0.665;QD=1.02;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:51,5:56:95.88:96,0,767
1    93698222    rs661566    C    G    368.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=4.742;DB;DP=35;Dels=0.0;FS=3.724;HRun=1;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.052;QD=10.54;ReadPosRankSum=-0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:20,15:35:99:399,0,592
1    93702119    rs797672    A    T    32.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=6.41;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:3,2:5:62.06:62,0,105
1    93704793    rs5776176    CT    C    383.64    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=3.078;DB;DP=35;FS=3.724;HRun=9;HaplotypeScore=98.5665;IndelType=D;MQ=60.31;MQ0=0;MQRankSum=1.038;QD=10.96;ReadPosRankSum=-0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:16,19:35:99:423,0,386
1    93711782    rs3754186    T    A    1068.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.04;DB;DP=82;Dels=0.0;FS=1.005;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=13.03;ReadPosRankSum=-0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:41,41:82:99:1099,0,1316
1    93711998    rs658178    C    G    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
1    93712178    rs668944    C    T    30.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    0/1:1,2:3:27.96:60,0,28
1    93712532    rs670650    G    A    268.93    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.651;DB;DP=23;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.155;QD=11.69;ReadPosRankSum=-0.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455267    GT:AD:DP:GQ:PL    0/1:13,10:23:99:299,0,469
1    93724106    rs10874765    A    G    86.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334652    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    93744055    rs10874767    G    A    1215.61    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.017;DB;DP=101;Dels=0.0;FS=2.8;HRun=0;HaplotypeScore=3.0659;MQ=58.94;MQ0=0;MQRankSum=1.086;QD=12.04;ReadPosRankSum=0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343253    GT:AD:DP:GQ:PL    0/1:57,44:101:99:1246,0,1714
1    93998640    rs34814765    AT    A    1846.64    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=8.2;DB;DP=128;FS=2.496;HRun=2;HaplotypeScore=315.1817;IndelType=D;MQ=59.89;MQ0=0;MQRankSum=0.188;QD=14.43;ReadPosRankSum=1.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260506    GT:AD:DP:GQ:PL    0/1:70,58:128:99:1886,0,2591
1    94002233    rs3767967    A    G    153.57    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.59;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260506    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:184,0,21
1    94012287    rs237425    G    A    784.37    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.593;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.305;QD=21.79;ReadPosRankSum=-1.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260506    GT:AD:DP:GQ:PL    0/1:13,23:36:99:814,0,416
1    94041787    rs25569    G    GAC    1503.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=74.7256;IndelType=I;MQ=60.72;MQ0=0;QD=50.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260502    GT:AD:DP:GQ:PL    1/1:2,27:30:87.30:1546,87,0
1    94054382    rs236319    T    C    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479503    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    94054627    rs2137623    G    A    328.08    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.049;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.732;QD=17.27;ReadPosRankSum=-0.634;SNPEFF_AMINO_ACID_CHANGE=T188I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94054534_94054976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370247    GT:AD:DP:GQ:PL    0/1:9,10:19:99:358,0,228
1    94312482    rs5776191    T    TC    337.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=21.8455;IndelType=I;MQ=59.85;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370244    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:380,27,0
1    94335194    rs1051394    A    T    493.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.351;DB;DP=30;Dels=0.0;FS=2.062;HRun=1;HaplotypeScore=2.6532;MQ=59.23;MQ0=0;MQRankSum=-0.066;QD=16.44;ReadPosRankSum=0.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359208    GT:AD:DP:GQ:PL    0/1:12,18:30:99:523,0,338
1    94341137    rs2273166    C    T    747.97    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=68;Dels=0.0;FS=9.75;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.595;QD=11.0;ReadPosRankSum=1.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460191    GT:AD:DP:GQ:PL    0/1:39,29:68:99:778,0,1332
1    94341267    rs2273165    A    G    1381.54    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=4.456;DB;DP=124;Dels=0.0;FS=0.683;HRun=0;HaplotypeScore=3.4516;MQ=59.81;MQ0=0;MQRankSum=0.4;QD=11.14;ReadPosRankSum=-0.411;SNPEFF_AMINO_ACID_CHANGE=F580;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94341201_94341339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436063    GT:AD:DP:GQ:PL    0/1:75,49:124:99:1412,0,2402
1    94342061    rs41292661    C    T    2746.85    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.605;DB;DP=194;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.536;MQ=60.0;MQ0=0;MQRankSum=1.327;QD=14.16;ReadPosRankSum=1.054;SNPEFF_AMINO_ACID_CHANGE=G477E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94341824_94343418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436063    GT:AD:DP:GQ:PL    0/1:101,93:194:99:2777,0,3228
1    94342564    rs3747965    C    A    1823.50    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.445;DB;DP=141;Dels=0.0;FS=0.64;HRun=0;HaplotypeScore=1.81;MQ=59.67;MQ0=0;MQRankSum=-0.274;QD=12.93;ReadPosRankSum=-1.165;SNPEFF_AMINO_ACID_CHANGE=E309D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94341824_94343418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436063    GT:AD:DP:GQ:PL    0/1:77,64:141:99:1853,0,2565
1    94343023    rs2391322    A    G    1659.62    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=126;Dels=0.0;FS=6.269;HRun=2;HaplotypeScore=2.7634;MQ=60.0;MQ0=0;MQRankSum=1.138;QD=13.17;ReadPosRankSum=0.423;SNPEFF_AMINO_ACID_CHANGE=P156;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94341824_94343418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436063    GT:AD:DP:GQ:PL    0/1:68,58:126:99:1690,0,2209
1    94343233    rs3789457    T    C    1564.58    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.529;DB;DP=125;Dels=0.0;FS=4.482;HRun=0;HaplotypeScore=1.8216;MQ=59.45;MQ0=0;MQRankSum=-0.059;QD=12.52;ReadPosRankSum=-1.216;SNPEFF_AMINO_ACID_CHANGE=E86;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94341824_94343418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436063    GT:AD:DP:GQ:PL    0/1:62,63:125:99:1595,0,1941
1    94344716    rs2235971    C    T    434.62    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.043;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.752;QD=16.1;ReadPosRankSum=0.558;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460191    GT:AD:DP:GQ:PL    0/1:13,14:27:99:465,0,388
1    94471075    rs1762114    A    G    1984.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.2;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=I142;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94470997_94471138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535881    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2018,150,0
1    94474020    rs1191234    G    A    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    94476555    rs537831    G    A    297.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:331,27,0
1    94477232    rs565155    T    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    94480037    rs2275033    C    T    1099.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.915;DB;DP=90;Dels=0.0;FS=2.143;HRun=1;HaplotypeScore=3.0534;MQ=59.28;MQ0=0;MQRankSum=-0.322;QD=12.21;ReadPosRankSum=0.798;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470771    GT:AD:DP:GQ:PL    0/1:54,36:90:99:1129,0,1741
1    94481068    rs914958    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460514    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    94486587    rs4147848    G    T    98.57    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.95;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,177
1    94487354    rs472908    G    A    752.98    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=3.291;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.09;MQ0=0;MQRankSum=1.33;QD=14.76;ReadPosRankSum=1.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:26,25:51:99:783,0,784
1    94495930    rs547806    T    C    536.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:569,42,0
1    94496253    rs2297671    G    A    72.87    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=14.57;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:1,4:5:30.61:103,0,31
1    94544135    rs4147887    A    AC    1517.33    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.361;DB;DP=123;FS=2.099;HRun=6;HaplotypeScore=383.9214;IndelType=I;MQ=60.14;MQ0=0;MQRankSum=0.855;QD=12.34;ReadPosRankSum=-1.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:71,51:123:99:1556,0,1509
1    94544233    rs4147831    G    A    1977.14    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.757;DB;DP=153;Dels=0.0;FS=2.94;HRun=0;HaplotypeScore=0.734;MQ=59.76;MQ0=0;MQRankSum=-0.137;QD=12.92;ReadPosRankSum=-0.022;SNPEFF_AMINO_ACID_CHANGE=H423;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94544146_94544262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:84,69:153:99:2007,0,2560
1    94544276    rs4147830    G    A    1502.45    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.064;DB;DP=132;Dels=0.0;FS=6.22;HRun=1;HaplotypeScore=0.5784;MQ=59.73;MQ0=0;MQRankSum=0.339;QD=11.38;ReadPosRankSum=0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:78,53:132:99:1532,0,2449
1    94544326    rs3215952    GT    G    915.49    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=6.676;DB;DP=69;FS=5.987;HRun=2;HaplotypeScore=257.484;IndelType=D;MQ=59.65;MQ0=0;MQRankSum=1.289;QD=13.27;ReadPosRankSum=-1.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:39,30:69:99:955,0,1534
1    94545160    rs2275035    C    T    31.96    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=4.57;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:5,2:7:61.95:62,0,147
1    94549083    rs574741    T    C    313.46    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.112;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.064;QD=10.45;ReadPosRankSum=0.783;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:18,12:30:99:343,0,634
1    94564483    rs6657239    C    T    149.42    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=24;Dels=0.0;FS=2.671;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=0.967;QD=6.23;ReadPosRankSum=2.633;SNPEFF_AMINO_ACID_CHANGE=R212H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94564350_94564547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:18,6:24:99:179,0,441
1    94568822    rs2297636    T    C    507.19    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.06;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.25;MQ0=0;MQRankSum=-0.139;QD=16.36;ReadPosRankSum=-0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:14,17:31:99:537,0,468
1    94574053    rs11165073    C    A    565.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:599,45,0
1    94576893    rs2297635    G    A    103.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=14.84;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,101
1    94576968    rs2297634    T    C    405.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DB;DP=16;Dels=0.0;FS=3.59;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.651;QD=25.35;ReadPosRankSum=1.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    1/1:1,15:16:5.69:437,6,0
1    94578317    rs7524869    C    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    94578548    rs4847281    T    C    3321.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=P47;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94578529_94578622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370225    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3322,253,0
1    94639337    rs1330858    A    G    2033.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=36.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482481    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2067,162,0
1    94639447    rs1999272    C    T    4718.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=G1255D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_94637307_94640305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260526    GT:AD:DP:GQ:PL    1/1:0,141:141:99:4718,346,0
1    94645173    .    AAG    A    73.76    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DP=19;FS=0.0;HRun=0;HaplotypeScore=226.0825;IndelType=D;MQ=42.66;MQ0=0;MQRankSum=-2.742;QD=3.88;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260526    GT:AD:DP:GQ:PL    0/1:13,6:19:89.96:113,0,90
1    94654225    rs1411703    C    G    87.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260526    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    94667430    rs74980943    G    GA    792.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.348;DB;DP=30;FS=0.0;HRun=9;HaplotypeScore=75.1018;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=1.22;QD=26.42;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370217    GT:AD:DP:GQ:PL    1/1:3,27:30:55.16:835,55,0
1    94668046    rs1541099    C    T    1125.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260526    GT:AD:DP:GQ:PL    1/1:0,34:34:90.25:1158,90,0
1    94670784    rs10443184    T    C    278.15    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.537;QD=16.36;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260526    GT:AD:DP:GQ:PL    0/1:7,10:17:99:308,0,239
1    94674295    .    T    C    372.74    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=60.0;MQ0=0;MQRankSum=0.861;QD=11.3;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260526    GT:AD:DP:GQ:PL    0/1:19,13:33:99:403,0,566
1    94674723    rs6684237    G    A    294.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260526    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:327,24,0
1    94686110    rs1411698    A    T    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260526    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
1    94941376    rs681187    G    A    272.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.01;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468860    GT:AD:DP:GQ:PL    0/1:6,10:17:99:302,0,204
1    94980671    rs3118109    C    G    1414.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370214    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1447,108,0
1    94982785    rs77888949    A    T    230.60    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DB;DP=26;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.9997;MQ=59.11;MQ0=0;MQRankSum=0.694;QD=8.87;ReadPosRankSum=-1.517;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464165    GT:AD:DP:GQ:PL    0/1:12,14:26:99:261,0,342
1    94982810    rs337592    A    G    209.58    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.391;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=58.63;MQ0=0;MQRankSum=-0.439;QD=12.33;ReadPosRankSum=1.025;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464165    GT:AD:DP:GQ:PL    0/1:10,7:17:99:240,0,346
1    95001600    rs698946    A    C    4333.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=P111;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_95001521_95001720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334047    GT:AD:DP:GQ:PL    1/1:0,125:125:99:4334,337,0
1    95286658    rs6676991    C    A    240.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=26.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271227    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:273,24,0
1    95286675    rs11274910    GTCCCAAATGTAAA    G    563.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=96.199;IndelType=D;MQ=29.0;MQ0=0;QD=93.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271227    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:605,15,0
1    95290003    rs6687749    C    T    672.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271227    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:706,54,0
1    95290305    rs6541372    T    C    306.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271227    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:339,27,0
1    95293005    rs17407097    A    G    421.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.077;DB;DP=26;Dels=0.0;FS=1.799;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.128;QD=16.23;ReadPosRankSum=-1.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271227    GT:AD:DP:GQ:PL    0/1:13,13:26:99:452,0,425
1    95294089    rs2640065    T    C    1354.09    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.45;DB;DP=95;Dels=0.0;FS=0.776;HRun=0;HaplotypeScore=2.9313;MQ=59.76;MQ0=0;MQRankSum=0.659;QD=14.25;ReadPosRankSum=0.145;SNPEFF_AMINO_ACID_CHANGE=Y104;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_95294049_95294142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422520    GT:AD:DP:GQ:PL    0/1:48,47:95:99:1384,0,1416
1    95294370    rs2640066    G    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    95305440    rs859120    A    G    759.46    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.511;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=18.52;ReadPosRankSum=0.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422520    GT:AD:DP:GQ:PL    0/1:18,23:41:99:789,0,603
1    95307842    rs698967    T    C    243.51    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=18.73;ReadPosRankSum=1.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422520    GT:AD:DP:GQ:PL    0/1:5,8:13:99:274,0,153
1    95330372    rs859098    G    A    4854.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7886;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_AMINO_ACID_CHANGE=V358I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_95330299_95330455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532427    GT:AD:DP:GQ:PL    1/1:0,133:134:99:4855,355,0
1    95333068    rs859096    G    T    400.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271227    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:434,33,0
1    95333195    rs859095    G    A    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271227    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    95358096    rs859063    A    G    2882.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370206    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2916,211,0
1    95367108    rs72357122    ACC    A    289.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=77.195;IndelType=D;MQ=58.98;MQ0=0;QD=24.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474409    GT:AD:DP:GQ:PL    1/1:2,10:12:30.08:332,30,0
1    95367136    rs859059    G    A    743.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474409    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:777,60,0
1    95367649    rs859058    T    C    1098.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474409    GT:AD:DP:GQ:PL    1/1:0,36:36:87.27:1132,87,0
1    95367894    rs859057    A    C    201.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370206    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
1    95369211    rs859054    T    G    541.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370206    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:574,42,0
1    95709821    rs259358    T    C    1957.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.27;MQ0=0;QD=31.07;SNPEFF_AMINO_ACID_CHANGE=V32A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_95709767_95711058;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429514    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1990,150,0
1    95709939    rs2296308    T    G    1943.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=32.94;SNPEFF_AMINO_ACID_CHANGE=N71K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_95709767_95711058;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429514    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1977,147,0
1    96913765    rs4000303    A    G    189.70    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.989;DB;DP=22;Dels=0.0;FS=3.056;HRun=0;HaplotypeScore=0.0;MQ=42.43;MQ0=0;MQRankSum=-1.55;QD=8.62;ReadPosRankSum=0.429;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=EEF1A1P11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415278    GT:AD:DP:GQ:PL    0/1:12,10:22:99:220,0,387
1    97250452    rs75437331    A    G    121.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.43;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236228    GT:AD:DP:GQ:PL    0/1:2,5:7:53.95:152,0,54
1    97278671    rs41299549    G    C    1663.67    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.907;DB;DP=88;Dels=0.0;FS=2.946;HRun=1;HaplotypeScore=2.8422;MQ=58.78;MQ0=0;MQRankSum=-0.073;QD=18.91;ReadPosRankSum=1.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459735    GT:AD:DP:GQ:PL    0/1:34,54:88:99:1694,0,987
1    97544771    rs290855    T    C    1013.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370192    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1047,78,0
1    97547831    rs290854    G    A    1940.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370192    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1974,147,0
1    97981242    rs2811178    T    C    229.55    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DB;DP=24;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.908;QD=9.56;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370192    GT:AD:DP:GQ:PL    0/1:14,10:24:99:260,0,439
1    98039541    rs56293913    A    G    268.85    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.561;DB;DP=19;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.589;QD=14.15;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370192    GT:AD:DP:GQ:PL    0/1:10,9:19:99:299,0,282
1    98144856    rs3790387    T    C    60.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.05;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370192    GT:AD:DP:GQ:PL    0/1:3,3:6:90.30:90,0,108
1    98164768    rs6668296    C    T    104.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=10.48;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370192    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,209
1    98165091    rs2297595    T    C    1533.95    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=109;Dels=0.0;FS=5.725;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=1.98;QD=14.07;ReadPosRankSum=0.415;SNPEFF_AMINO_ACID_CHANGE=M166V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_98164907_98165103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370192    GT:AD:DP:GQ:PL    0/1:57,52:109:99:1564,0,1861
1    98186229    rs55684412    T    C    38.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.65;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370192    GT:AD:DP:GQ:PL    0/1:3,2:5:68.24:68,0,110
1    98348885    rs1801265    G    A    538.98    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.414;DB;DP=37;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.9332;MQ=58.74;MQ0=0;MQRankSum=-0.015;QD=14.57;ReadPosRankSum=-0.598;SNPEFF_AMINO_ACID_CHANGE=R29C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_98348820_98348930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306031    GT:AD:DP:GQ:PL    0/1:16,21:37:99:569,0,508
1    98349390    rs111231337    C    CA    846.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.134;DB;DP=45;FS=0.0;HRun=11;HaplotypeScore=183.1027;IndelType=I;MQ=57.89;MQ0=0;MQRankSum=1.574;QD=18.82;ReadPosRankSum=1.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306031    GT:AD:DP:GQ:PL    1/1:9,34:45:55.22:889,55,0
1    99150635    rs9433747    G    A    1031.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306121    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1064,78,0
1    99167215    rs5776431    CA    C    214.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=13;HaplotypeScore=56.582;IndelType=D;MQ=59.89;MQ0=0;QD=17.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306121    GT:AD:DP:GQ:PL    1/1:2,10:12:35.72:256,36,0
1    99225627    rs2019213    G    A    1228.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=E317;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_99225610_99226054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370189    GT:AD:DP:GQ:PL    1/1:0,36:36:90.30:1262,90,0
1    99387628    rs79819201    T    TA    528.79    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.088;DB;DP=39;FS=0.0;HRun=8;HaplotypeScore=81.4953;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-2.066;QD=13.56;ReadPosRankSum=-0.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL161744.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263177    GT:AD:DP:GQ:PL    0/1:20,19:39:99:568,0,212
1    99418911    rs10674519    T    TTGTG    256.50    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=165.4291;IndelType=I;MQ=57.03;MQ0=0;MQRankSum=-0.825;QD=9.16;ReadPosRankSum=-1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL161744.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263177    GT:AD:DP:GQ:PL    0/1:23,5:28:99:296,0,145
1    99470269    rs12057990    T    C    150.27    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=-0.041;QD=6.83;ReadPosRankSum=1.021;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL161744.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534652    GT:AD:DP:GQ:PL    0/1:12,10:22:99:180,0,319
1    99764303    rs819911    T    C    121.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-788L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263178    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
1    99766253    rs819915    C    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-788L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263178    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    100111956    rs834997    A    G    949.42    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=4.355;DB;DP=56;Dels=0.0;FS=1.287;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.885;QD=16.95;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263174    GT:AD:DP:GQ:PL    0/1:22,34:56:99:979,0,667
1    100133438    rs35580645    CT    C    208.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=14;HaplotypeScore=95.8875;IndelType=D;MQ=55.96;MQ0=0;QD=11.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263174    GT:AD:DP:GQ:PL    1/1:5,12:18:37.70:250,38,0
1    100133510    rs1416230    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=65.19;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263174    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    100152443    rs1338576    T    C    1944.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263174    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1977,159,0
1    100316589    rs2307130    A    G    3463.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;QD=32.07;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000370165    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3464,253,0
1    100316765    rs663848    C    T    644.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:678,51,0
1    100327481    rs3766592    C    A    120.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
1    100329889    rs535461    G    C    1326.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1359,105,0
1    100330237    rs538389    A    G    450.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:484,36,0
1    100330295    rs539157    T    C    35.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
1    100335883    rs903126    A    G    299.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,11:11:30.06:332,30,0
1    100336361    rs2230306    C    T    1673.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=L281;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_100336314_100336425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361522    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1707,123,0
1    100340225    rs634880    G    A    831.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:865,63,0
1    100342227    rs3736295    C    T    712.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=37.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477753    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:745,54,0
1    100343073    rs2291637    T    A    314.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477753    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:347,27,0
1    100343153    rs2291638    A    G    804.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477753    GT:AD:DP:GQ:PL    1/1:0,27:27:72.19:837,72,0
1    100345409    rs2392077    C    G    541.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477753    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:575,45,0
1    100346741    rs3736296    T    C    1766.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477753    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1799,135,0
1    100350383    rs2234707    G    A    493.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.47;MQ0=0;QD=37.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:527,39,0
1    100353675    rs555929    G    A    1529.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1562,114,0
1    100357041    rs2035960    A    G    779.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:812,60,0
1    100357141    rs2035961    T    A    1620.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7653;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1654,123,0
1    100358200    rs594249    G    A    779.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=38.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:812,60,0
1    100366446    rs34436422    GTT    G    588.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.08;DB;DP=48;FS=0.0;HRun=15;HaplotypeScore=237.4683;IndelType=D;MQ=57.43;MQ0=1;MQRankSum=2.194;QD=12.0;ReadPosRankSum=0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:24,21:48:27.78:630,28,0
1    100376448    rs2274570    G    A    233.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:267,21,0
1    100376456    rs1541041    T    A    298.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
1    100381109    rs11438303    A    AT    470.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.709;DB;DP=39;FS=0.0;HRun=13;HaplotypeScore=179.7656;IndelType=I;MQ=57.59;MQ0=0;MQRankSum=-0.273;QD=12.07;ReadPosRankSum=-0.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:19,19:39:27.53:513,28,0
1    100381869    rs2296885    G    A    550.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294724    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:584,45,0
1    100472604    rs534252    A    G    449.62    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.124;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.5;MQ0=0;MQRankSum=0.838;QD=12.15;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=L119;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_100472590_100472712;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370155    GT:AD:DP:GQ:PL    0/1:20,17:37:99:480,0,674
1    100483213    rs11166393    A    G    63.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.1;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422078    GT:AD:DP:GQ:PL    0/1:3,4:7:93.70:94,0,99
1    100533387    rs577539    A    G    109.18    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.84;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370152    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:139,0,27
1    100533960    rs6687189    G    A    552.04    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=4.318;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=20.45;ReadPosRankSum=0.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370152    GT:AD:DP:GQ:PL    0/1:11,16:27:99:582,0,300
1    100543962    rs644835    A    G    206.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.95;MQ0=0;MQRankSum=-0.106;QD=9.4;ReadPosRankSum=-0.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370152    GT:AD:DP:GQ:PL    0/1:11,11:22:99:237,0,407
1    100568759    rs544225    C    G    119.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287482    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
1    100575933    rs13375867    G    A    541.89    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=54;Dels=0.0;FS=6.281;HRun=0;HaplotypeScore=1.565;MQ=59.65;MQ0=0;MQRankSum=0.706;QD=10.03;ReadPosRankSum=0.486;SNPEFF_AMINO_ACID_CHANGE=A232V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_100575848_100576039;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASS6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539329    GT:AD:DP:GQ:PL    0/1:34,20:54:99:572,0,917
1    100587146    rs17418475    T    C    219.78    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=26;Dels=0.0;FS=5.724;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.162;QD=8.45;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287482    GT:AD:DP:GQ:PL    0/1:17,9:26:99:250,0,625
1    100598866    rs472498    G    A    181.77    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.356;DB;DP=26;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.341;QD=6.99;ReadPosRankSum=0.246;SNPEFF_AMINO_ACID_CHANGE=A17T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_100598771_100598871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC76;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370139    GT:AD:DP:GQ:PL    0/1:14,12:26:99:212,0,359
1    100598867    rs687513    C    T    192.95    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.912;DB;DP=25;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.232;QD=7.72;ReadPosRankSum=0.058;SNPEFF_AMINO_ACID_CHANGE=A17V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_100598771_100598871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC76;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370139    GT:AD:DP:GQ:PL    0/1:13,12:25:99:223,0,298
1    100617887    rs2784177    C    T    877.25    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.309;DB;DP=67;Dels=0.0;FS=1.902;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.361;QD=13.09;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370141    GT:AD:DP:GQ:PL    0/1:38,29:67:99:907,0,1315
1    100624113    rs142356038    C    T    36.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.46;MQ0=0;QD=12.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342895    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
1    100662090    rs113505577    CTG    C    371.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=33.9462;IndelType=D;MQ=58.63;MQ0=0;QD=41.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370132    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:414,27,0
1    100671755    rs115696850    A    C    799.28    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.806;DB;DP=62;Dels=0.0;FS=0.992;HRun=1;HaplotypeScore=2.9908;MQ=58.5;MQ0=0;MQRankSum=0.085;QD=12.89;ReadPosRankSum=-0.832;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370131    GT:AD:DP:GQ:PL    0/1:33,29:62:99:829,0,1009
1    100671860    .    AT    A    180.07    PASS    AB=0.9;AC=1;AF=0.50;AN=2;BaseQRankSum=0.769;DP=54;FS=9.848;HRun=6;HaplotypeScore=303.5911;IndelType=D;MQ=56.94;MQ0=0;MQRankSum=0.487;QD=3.33;ReadPosRankSum=-0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370131    GT:AD:DP:GQ:PL    0/1:48,6:54:99:219,0,768
1    100671866    rs34229137    T    A    141.85    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=56;Dels=0.0;FS=1.249;HRun=13;HaplotypeScore=11.3656;MQ=56.62;MQ0=0;MQRankSum=1.265;QD=2.53;ReadPosRankSum=0.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370131    GT:AD:DP:GQ:PL    0/1:39,17:56:99:172,0,969
1    100672060    rs12021720    T    C    2794.96    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=190;Dels=0.0;FS=1.803;HRun=1;HaplotypeScore=2.7022;MQ=59.64;MQ0=0;MQRankSum=-0.385;QD=14.56;ReadPosRankSum=-0.085;SNPEFF_AMINO_ACID_CHANGE=S203G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_100672001_100672192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543138    GT:AD:DP:GQ:PL    0/1:90,100:190:99:2825,0,2711
1    100715454    rs3806235    G    A    99.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=6.24;ReadPosRankSum=0.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370131    GT:AD:DP:GQ:PL    0/1:10,6:16:99:130,0,325
1    100733207    rs113878786    G    GT    612.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.019;DB;DP=43;FS=0.0;HRun=14;HaplotypeScore=284.9877;IndelType=I;MQ=55.09;MQ0=0;MQRankSum=0.612;QD=14.25;ReadPosRankSum=0.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370126    GT:AD:DP:GQ:PL    1/1:15,17:43:80.22:655,80,0
1    100733552    rs4298755    T    C    94.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.83;ReadPosRankSum=-1.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370126    GT:AD:DP:GQ:PL    0/1:4,4:8:99:125,0,133
1    100736488    rs12733493    C    A    34.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.52;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370126    GT:AD:DP:GQ:PL    0/1:2,2:4:64.08:64,0,66
1    100740694    rs3131833    G    A    232.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483474    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:265,21,0
1    100742670    rs4495726    A    G    43.21    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=5.4;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483474    GT:AD:DP:GQ:PL    0/1:5,3:8:73.20:73,0,178
1    100750733    rs68135526    AGTTTT    A    365.35    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=94.6719;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=20.3;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260563    GT:AD:DP:GQ:PL    0/1:10,8:18:99:404,0,470
1    100756884    rs148947507    CT    C    432.07    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.83;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=69.328;IndelType=D;MQ=60.47;MQ0=0;MQRankSum=0.899;QD=18.79;ReadPosRankSum=-1.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260563    GT:AD:DP:GQ:PL    0/1:10,13:23:99:471,0,411
1    100797449    rs614766    A    T    816.25    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.65;MQ0=0;MQRankSum=-0.373;QD=15.4;ReadPosRankSum=0.037;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP5-837M10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401024    GT:AD:DP:GQ:PL    0/1:22,31:53:99:846,0,633
1    100797473    rs614805    T    C    833.58    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=0.565;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7825;MQ=59.29;MQ0=0;MQRankSum=-0.972;QD=15.73;ReadPosRankSum=1.584;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP5-837M10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401024    GT:AD:DP:GQ:PL    0/1:23,30:53:99:864,0,694
1    100818286    rs527644    A    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455467    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    100818464    rs594529    T    C    854.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455467    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:887,69,0
1    100908324    rs584350    A    G    74.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336454    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:104,0,69
1    100933388    rs560431    T    C    378.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=37.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455467    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:412,30,0
1    100950183    .    TA    T    52.89    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DP=8;FS=0.0;HRun=12;HaplotypeScore=19.3713;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.684;QD=6.61;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336454    GT:AD:DP:GQ:PL    0/1:3,5:8:67.43:92,0,67
1    100961419    rs2270692    A    G    425.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336454    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:459,36,0
1    100961779    rs34361112    ATT    A    94.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=9;FS=0.0;HRun=15;HaplotypeScore=73.0231;IndelType=D;MQ=54.65;MQ0=0;MQRankSum=-0.742;QD=10.49;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336454    GT:AD:DP:GQ:PL    1/1:2,5:9:12.16:136,12,0
1    100963418    rs904296    T    G    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336454    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
1    100963479    rs35904273    CAG    C    486.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=70.0542;IndelType=D;MQ=57.0;MQ0=0;QD=40.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336454    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:529,36,0
1    100983623    rs3767839    G    A    176.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336454    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
1    101005090    rs2809819    G    A    130.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=V190I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_101004450_101007574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR88;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315033    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
1    101189027    rs1476408    C    G    170.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=24.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294728    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:203,15,0
1    101190173    rs2392221    C    T    624.46    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=3.444;DB;DP=61;Dels=0.0;FS=5.369;HRun=3;HaplotypeScore=0.9916;MQ=59.62;MQ0=0;MQRankSum=1.112;QD=10.24;ReadPosRankSum=0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294728    GT:AD:DP:GQ:PL    0/1:34,27:61:99:654,0,985
1    101199979    rs3176875    A    G    356.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294728    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:390,30,0
1    101203395    rs3176877    A    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294728    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    101203827    rs3176879    G    A    2032.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=K537;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_101203679_101204594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370115    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2065,153,0
1    101342497    rs2295280    T    C    490.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.451;DB;DP=32;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=0.358;QD=15.32;ReadPosRankSum=0.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416479    GT:AD:DP:GQ:PL    0/1:16,16:32:99:520,0,548
1    101372607    rs4908106    C    A    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357650    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
1    102251767    rs71088109    CT    C    56.30    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.691;DB;DP=15;FS=0.0;HRun=17;HaplotypeScore=86.0887;IndelType=D;MQ=38.32;MQ0=0;MQRankSum=-2.27;QD=3.52;ReadPosRankSum=-1.875;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-556K13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332100    GT:AD:DP:GQ:PL    0/1:3,8:15:14.20:95,0,14
1    102296144    rs10493974    T    G    1259.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9401;MQ=58.59;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338858    GT:AD:DP:GQ:PL    1/1:0,32:33:96.30:1293,96,0
1    102296279    rs10493973    T    C    3474.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.121;DB;DP=112;Dels=0.0;FS=2.981;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.868;QD=31.03;ReadPosRankSum=-0.648;SNPEFF_AMINO_ACID_CHANGE=K107;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_102296228_102296383;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370103    GT:AD:DP:GQ:PL    1/1:2,110:112:99:3475,193,0
1    103352451    rs2229783    A    G    1193.03    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.39;DB;DP=79;Dels=0.0;FS=9.59;HRun=0;HaplotypeScore=0.5784;MQ=59.71;MQ0=0;MQRankSum=1.021;QD=15.1;ReadPosRankSum=-0.656;SNPEFF_AMINO_ACID_CHANGE=I1474;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_103352363_103352612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512756    GT:AD:DP:GQ:PL    0/1:35,44:79:99:1223,0,1185
1    103352773    rs11164628    C    T    40.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:70,0,23
1    103353933    rs11164633    G    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    103353934    rs2615980    C    T    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    103354115    rs17127203    T    C    358.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.087;DB;DP=24;Dels=0.0;FS=6.701;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.202;QD=14.94;ReadPosRankSum=0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:12,12:24:99:389,0,394
1    103354138    rs1676486    A    G    540.12    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=2.264;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.42;MQ0=0;MQRankSum=0.23;QD=16.88;ReadPosRankSum=-1.036;SNPEFF_AMINO_ACID_CHANGE=S1419P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_103354133_103354186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000512756    GT:AD:DP:GQ:PL    0/1:13,19:32:99:570,0,420
1    103354428    rs1763347    A    G    1154.97    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=86;Dels=0.0;FS=0.831;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=13.43;ReadPosRankSum=0.294;SNPEFF_AMINO_ACID_CHANGE=G1388;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_103354422_103354475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512756    GT:AD:DP:GQ:PL    0/1:41,45:86:99:1185,0,1178
1    103356107    rs11164634    A    G    214.85    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=11.94;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:10,8:18:99:245,0,303
1    103356168    rs1085    A    C    35.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.77;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:2,2:4:65.07:65,0,71
1    103379918    rs3753841    G    A    415.51    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.807;DB;DP=29;Dels=0.0;FS=1.455;HRun=1;HaplotypeScore=0.9999;MQ=59.36;MQ0=0;MQRankSum=-0.327;QD=14.33;ReadPosRankSum=-2.073;SNPEFF_AMINO_ACID_CHANGE=P1207L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_103379908_103379961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000512756    GT:AD:DP:GQ:PL    0/1:14,15:29:99:446,0,328
1    103380379    rs112615091    T    TA    127.05    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=15;FS=0.0;HRun=13;HaplotypeScore=58.5199;IndelType=I;MQ=59.91;MQ0=0;MQRankSum=0.762;QD=8.47;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:7,8:15:14.12:166,0,14
1    103381129    rs4908273    C    T    728.13    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.578;MQ=60.0;MQ0=0;MQRankSum=0.008;QD=12.55;ReadPosRankSum=-0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:30,27:58:99:758,0,939
1    103385653    rs11801437    G    A    198.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:231,18,0
1    103428389    rs1841834    G    A    164.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
1    103444679    rs11164649    T    G    746.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,26:26:60.16:780,60,0
1    103449598    rs2615978    G    C    719.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:752,54,0
1    103455217    rs1463034    C    T    624.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:1,18:19:48.16:657,48,0
1    103461438    rs140608161    C    T    461.85    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=1.925;DB;DP=69;Dels=0.0;FS=2.211;HRun=2;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.367;QD=6.69;ReadPosRankSum=-0.624;SNPEFF_AMINO_ACID_CHANGE=R7K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_103461420_103461464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370090    GT:AD:DP:GQ:PL    0/1:47,22:69:99:492,0,1486
1    103461508    rs2622867    T    A    2923.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2957,220,0
1    103462386    rs2622868    T    C    90.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461720    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    103462473    rs2786125    A    G    734.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461720    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:767,57,0
1    103463976    rs2622870    G    T    435.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461720    GT:AD:DP:GQ:PL    1/1:0,13:13:39.05:469,39,0
1    103467615    rs2929162    C    T    431.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:464,36,0
1    103468336    .    A    C    79.27    FSFilter60;QDFilter2    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.97;DP=61;Dels=0.0;FS=94.544;HRun=2;HaplotypeScore=4.3229;MQ=53.21;MQ0=0;MQRankSum=-0.73;QD=1.3;ReadPosRankSum=-1.005;SNPEFF_AMINO_ACID_CHANGE=G554;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_103468303_103468347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512756    GT:AD:DP:GQ:PL    0/1:33,28:61:99:109,0,1077
1    103468501    .    A    G    158.59    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=22.66;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:2,5:7:47.13:189,0,47
1    103468609    rs2251895    A    G    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    103468855    .    TAA    T    172.02    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DP=13;FS=0.0;HRun=12;HaplotypeScore=49.0242;IndelType=D;MQ=59.9;MQ0=0;MQRankSum=1.531;QD=13.23;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:5,8:13:99:211,0,101
1    103471456    rs142425417    CCAT    C    2009.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.0;HRun=0;HaplotypeScore=375.662;IndelType=D;MQ=60.38;MQ0=0;QD=21.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427239    GT:AD:DP:GQ:PL    1/1:40,52:92:99:2051,150,0
1    103471734    rs71592255    A    AAAATAAATAAAT    1237.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=144.4067;IndelType=I;MQ=45.32;MQ0=0;QD=72.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427239    GT:AD:DP:GQ:PL    1/1:10,5:17:27.09:1280,27,0
1    103483514    rs945748    C    T    736.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:769,57,0
1    103487394    rs35291481    CT    C    745.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=11;HaplotypeScore=110.5807;IndelType=D;MQ=60.33;MQ0=0;QD=22.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:2,31:33:95.89:788,96,0
1    103496620    rs7523441    G    T    594.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:627,45,0
1    103496805    rs71094589    GA    G    293.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.004;DB;DP=23;FS=0.0;HRun=13;HaplotypeScore=105.872;IndelType=D;MQ=59.72;MQ0=0;MQRankSum=-0.639;QD=12.76;ReadPosRankSum=0.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:6,16:23:26.12:336,26,0
1    103548319    rs11164662    C    G    588.56    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.178;QD=13.69;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:22,21:43:99:619,0,692
1    103548497    rs11164663    A    C    862.60    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.219;DB;DP=75;Dels=0.0;FS=1.155;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.229;QD=11.5;ReadPosRankSum=-0.518;SNPEFF_AMINO_ACID_CHANGE=D46E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_103548361_103548528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    0/1:42,33:75:99:893,0,1361
1    103573547    rs6691654    G    A    370.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5942;MQ=55.21;MQ0=0;QD=24.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353414    GT:AD:DP:GQ:PL    1/1:0,15:15:33.09:404,33,0
1    104116413    rs17851840    T    C    3013.77    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.463;DB;DP=244;DS;Dels=0.0;FS=1.014;HRun=1;HaplotypeScore=0.0;MQ=51.71;MQ0=4;MQRankSum=-3.003;QD=12.35;ReadPosRankSum=-2.345;SNPEFF_AMINO_ACID_CHANGE=N199;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_104116330_104116560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AMY2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361355    GT:AD:DP:GQ:PL    0/1:125,119:244:99:3044,0,3805
1    104118225    .    C    T    907.56    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=2.778;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.96;MQ0=0;MQRankSum=-1.052;QD=13.15;ReadPosRankSum=0.432;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AMY2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435302    GT:AD:DP:GQ:PL    0/1:40,29:69:99:938,0,1439
1    104121744    .    A    G    95.40    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.65;MQ0=0;MQRankSum=-1.3;QD=13.63;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AMY2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462971    GT:AD:DP:GQ:PL    0/1:3,4:7:99:125,0,101
1    104166496    rs151102880    T    C    375.82    MQFilter40;QDFilter2    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.371;DB;DP=250;DS;Dels=0.0;FS=10.752;HRun=0;HaplotypeScore=1.2434;MQ=8.05;MQ0=200;MQRankSum=-2.167;QD=1.5;ReadPosRankSum=-0.464;SNPEFF_AMINO_ACID_CHANGE=N370;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_104166488_104166606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMY2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393932    GT:AD:DP:GQ:PL    0/1:70,180:250:99:406,0,139
1    104260621    rs142944877    T    C    246.38    FSFilter60;MQFilter40;QDFilter2    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.659;DB;DP=232;Dels=0.0;FS=80.363;HRun=0;HaplotypeScore=7.3863;MQ=15.57;MQ0=126;MQRankSum=-1.238;QD=1.06;ReadPosRankSum=0.866;SNPEFF_AMINO_ACID_CHANGE=N370;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_104260613_104260731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMY1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332554    GT:AD:DP:GQ:PL    0/1:125,107:232:99:276,0,1106
1    104297389    rs140363602    C    T    123.57    MQFilter40;QDFilter2    AB=0.904;AC=1;AF=0.50;AN=2;BaseQRankSum=5.521;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8938;MQ=18.67;MQ0=163;MQRankSum=-2.493;QD=0.49;ReadPosRankSum=-1.2;SNPEFF_AMINO_ACID_CHANGE=R352*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_104297337_104297436;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMY1C;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000370079    GT:AD:DP:GQ:PL    0/1:226,24:250:99:154,0,2165
1    104297591    .    T    C    47.38    MQFilter40;QDFilter2    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.56;MQ0=18;MQRankSum=0.55;QD=1.9;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMY1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370079    GT:AD:DP:GQ:PL    0/1:16,9:25:77.38:77,0,124
1    107867641    rs113825565    C    T    427.03    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.219;QD=21.35;ReadPosRankSum=-0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294649    GT:AD:DP:GQ:PL    0/1:7,13:20:99:457,0,194
1    107867717    rs1132933    A    C    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294649    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
1    107961159    rs12731224    A    G    313.19    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.142;QD=9.21;ReadPosRankSum=-1.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370061    GT:AD:DP:GQ:PL    0/1:21,13:34:99:343,0,691
1    107961196    rs17530804    G    A    765.39    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=3.178;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=59.19;MQ0=0;MQRankSum=-0.936;QD=13.43;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370061    GT:AD:DP:GQ:PL    0/1:27,29:56:99:795,0,683
1    107979396    rs480392    A    C    3544.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9889;MQ=59.55;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=G202;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_107979287_107979421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370062    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3544,268,0
1    107979566    rs71720094    AT    A    278.72    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.393;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=29.9795;IndelType=D;MQ=61.94;MQ0=0;MQRankSum=0.0;QD=25.34;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370061    GT:AD:DP:GQ:PL    0/1:1,10:11:14.87:318,0,15
1    108115871    rs62618754    C    T    170.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.208;QD=10.66;ReadPosRankSum=-1.418;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343258    GT:AD:DP:GQ:PL    0/1:8,8:16:99:201,0,284
1    108139003    rs3748702    C    T    470.12    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.172;DB;DP=36;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.665;QD=13.06;ReadPosRankSum=-1.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370056    GT:AD:DP:GQ:PL    0/1:17,19:36:99:500,0,534
1    108152630    rs2296877    G    T    419.49    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.166;DB;DP=29;Dels=0.0;FS=3.89;HRun=0;HaplotypeScore=1.9164;MQ=59.2;MQ0=0;MQRankSum=-1.705;QD=14.47;ReadPosRankSum=-1.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370056    GT:AD:DP:GQ:PL    0/1:12,17:29:99:449,0,431
1    108160260    rs36010982    GA    G    345.95    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=69;FS=4.409;HRun=12;HaplotypeScore=228.6711;IndelType=D;MQ=59.79;MQ0=0;MQRankSum=0.146;QD=5.01;ReadPosRankSum=-0.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370056    GT:AD:DP:GQ:PL    0/1:43,25:69:99:385,0,830
1    108247013    rs4526642    G    A    41.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=10.41;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370056    GT:AD:DP:GQ:PL    0/1:1,3:4:28.77:72,0,29
1    108292260    rs6672483    A    G    466.55    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.352;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;MQRankSum=1.522;QD=15.05;ReadPosRankSum=1.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370056    GT:AD:DP:GQ:PL    0/1:16,15:31:99:497,0,528
1    108307636    rs12735293    G    C    479.53    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.834;QD=19.18;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524574    GT:AD:DP:GQ:PL    0/1:11,14:25:99:510,0,376
1    108307642    rs7514025    C    T    995.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524574    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1028,75,0
1    108307727    rs7528153    T    A    2025.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=T233S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_108307698_108307797;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371846    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2058,150,0
1    108313258    rs6583048    C    T    3345.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=K151;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_108313258_108313350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371846    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3345,274,0
1    108315256    rs7416884    G    C    221    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=17.0;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370056    GT:AD:DP:GQ:PL    0/1:6,7:13:99:251,0,204
1    108315305    rs4611048    C    T    1369.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370056    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1403,108,0
1    108679532    rs17513812    C    T    95.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=11.97;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    0/1:4,4:8:99:126,0,136
1    108681600    rs34563977    T    C    146.11    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=13.28;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    0/1:6,5:11:99:176,0,217
1    108700316    rs829002    G    C    495.20    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.525;DB;DP=39;Dels=0.0;FS=7.066;HRun=0;HaplotypeScore=1.9707;MQ=59.41;MQ0=0;MQRankSum=-0.147;QD=12.7;ReadPosRankSum=0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    0/1:22,17:39:99:525,0,761
1    108703834    rs11185293    C    T    812.60    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.598;DB;DP=57;Dels=0.0;FS=2.504;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-1.27;QD=14.26;ReadPosRankSum=-1.188;SNPEFF_AMINO_ACID_CHANGE=E141;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_108703804_108703915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370041    GT:AD:DP:GQ:PL    0/1:29,28:57:99:843,0,852
1    108724518    rs490680    A    G    439.92    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=27;Dels=0.0;FS=6.532;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.51;QD=16.29;ReadPosRankSum=-1.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    0/1:13,14:27:99:470,0,453
1    108724541    rs17514537    T    C    529.71    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.02;DB;DP=32;Dels=0.0;FS=9.84;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.804;QD=16.55;ReadPosRankSum=0.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    0/1:14,18:32:99:560,0,460
1    108724693    rs491785    G    A    512.47    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.431;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=15.53;ReadPosRankSum=0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    0/1:16,17:33:99:542,0,472
1    108724766    rs492601    G    A    220.04    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=18.34;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    0/1:5,7:12:99:250,0,170
1    108728347    rs694667    T    C    141.09    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=11.76;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    0/1:5,7:12:99:171,0,174
1    108728484    rs862493    T    C    212.22    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=12.48;ReadPosRankSum=0.048;SNPEFF_AMINO_ACID_CHANGE=K73;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_108728450_108728576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370041    GT:AD:DP:GQ:PL    0/1:9,8:17:99:242,0,288
1    108734993    rs521545    G    C    1243.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9667;MQ=59.23;MQ0=0;MQRankSum=1.059;QD=34.53;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    1/1:1,35:36:74.63:1276,75,0
1    108735388    rs524504    T    A    252.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264128    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
1    108766133    rs3870737    A    G    72.02    MQFilter40    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.1;MQ0=4;MQRankSum=-1.467;QD=4.0;ReadPosRankSum=-1.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370038    GT:AD:DP:GQ:PL    0/1:11,7:18:99:102,0,296
1    108766424    rs3879436    A    G    750.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.601;DB;DP=58;Dels=0.0;FS=1.412;HRun=1;HaplotypeScore=0.0;MQ=43.93;MQ0=3;MQRankSum=-0.667;QD=12.94;ReadPosRankSum=0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370038    GT:AD:DP:GQ:PL    0/1:29,29:58:99:780,0,758
1    108771524    .    C    T    41.51    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.3;MQ0=29;QD=1.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370038    GT:AD:DP:GQ:PL    1/1:25,6:31:6.02:73,6,0
1    108921171    rs28633791    G    A    107.55    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=29.63;MQ0=2;MQRankSum=0.55;QD=11.95;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294652    GT:AD:DP:GQ:PL    0/1:3,6:9:66.77:138,0,67
1    108994925    rs115514944    A    G    481.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=25.51;MQ0=0;QD=21.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294652    GT:AD:DP:GQ:PL    1/1:0,21:22:56.96:515,57,0
1    108994952    rs145700606    G    T    219.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.04;MQ0=2;QD=16.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294652    GT:AD:DP:GQ:PL    1/1:2,11:13:26.99:252,27,0
1    109013458    rs2992768    C    T    48.53    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=37.62;MQ0=0;MQRankSum=-0.55;QD=6.93;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370040    GT:AD:DP:GQ:PL    0/1:3,4:7:54.43:79,0,54
1    109142993    rs4970790    A    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370035    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    109155144    rs904330    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370035    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    109159277    rs10436960    G    A    86.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370035    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    109170746    rs2133198    C    T    1100.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370035    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1134,90,0
1    109254545    rs2990872    T    C    1208.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=33.56;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    1/1:0,36:36:96.29:1241,96,0
1    109254666    rs1475694    A    T    824.37    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9995;MQ=59.68;MQ0=0;MQRankSum=-1.434;QD=13.97;ReadPosRankSum=-1.237;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    0/1:31,28:59:99:854,0,934
1    109254672    rs1475693    T    C    727.29    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.505;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.544;QD=12.99;ReadPosRankSum=-0.461;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    0/1:31,25:56:99:757,0,955
1    109260181    rs914806    A    G    203.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
1    109260357    rs4970804    G    A    2133.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2167,160,0
1    109261321    .    T    TA    458.49    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.925;DP=29;FS=3.485;HRun=1;HaplotypeScore=58.188;IndelType=I;MQ=59.2;MQ0=0;MQRankSum=0.943;QD=15.81;ReadPosRankSum=-0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    0/1:16,13:29:99:498,0,523
1    109265029    rs4423040    G    T    2758.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.045;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.575;MQ=59.73;MQ0=0;MQRankSum=-0.312;QD=32.84;ReadPosRankSum=0.223;SNPEFF_AMINO_ACID_CHANGE=R224L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109264957_109265214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370017    GT:AD:DP:GQ:PL    1/1:2,82:84:99:2792,169,0
1    109265326    rs4970743    G    C    117.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
1    109268441    rs11582005    G    A    913.88    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.857;QD=16.03;ReadPosRankSum=1.069;SNPEFF_AMINO_ACID_CHANGE=S309N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109268372_109268626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370017    GT:AD:DP:GQ:PL    0/1:25,32:57:99:944,0,771
1    109268573    rs4494160    T    C    764.89    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.284;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=14.16;ReadPosRankSum=0.625;SNPEFF_AMINO_ACID_CHANGE=V353A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109268372_109268626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370017    GT:AD:DP:GQ:PL    0/1:29,25:54:99:795,0,892
1    109270402    rs10494096    G    A    817.65    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=2.513;DB;DP=94;Dels=0.0;FS=0.927;HRun=0;HaplotypeScore=1.9454;MQ=60.0;MQ0=0;MQRankSum=-1.193;QD=8.7;ReadPosRankSum=-0.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    0/1:62,32:94:99:848,0,1628
1    109271198    rs12759087    G    A    233.40    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=17;Dels=0.0;FS=5.842;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.95;QD=13.73;ReadPosRankSum=-2.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    0/1:5,12:17:99:263,0,174
1    109273456    rs4970809    A    G    1071.77    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=0.639;DB;DP=76;Dels=0.0;FS=3.064;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=1.927;QD=14.1;ReadPosRankSum=1.548;SNPEFF_AMINO_ACID_CHANGE=G595;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109273296_109273550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370017    GT:AD:DP:GQ:PL    0/1:35,41:76:99:1102,0,1097
1    109273610    rs4970810    G    A    385.06    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=22;Dels=0.0;FS=3.067;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.336;QD=17.5;ReadPosRankSum=-0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271311    GT:AD:DP:GQ:PL    0/1:9,13:22:99:415,0,318
1    109299453    rs1277044    C    G    166.95    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.798;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.658;QD=8.79;ReadPosRankSum=1.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469338    GT:AD:DP:GQ:PL    0/1:13,6:19:99:197,0,475
1    109301250    rs1277042    G    C    558.15    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.985;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.197;QD=11.16;ReadPosRankSum=0.413;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483586    GT:AD:DP:GQ:PL    0/1:29,21:50:99:588,0,967
1    109315211    rs1623641    A    G    209.97    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=23.33;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370008    GT:AD:DP:GQ:PL    0/1:1,8:9:13.62:240,0,14
1    109318805    rs1759479    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370008    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    109321824    rs1759481    G    T    367.55    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.956;QD=11.49;ReadPosRankSum=-1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486601    GT:AD:DP:GQ:PL    0/1:18,14:32:99:398,0,637
1    109325436    rs1298092    T    C    154.33    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=19.29;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485167    GT:AD:DP:GQ:PL    0/1:2,6:8:52.71:184,0,53
1    109336411    rs1277016    G    A    311.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495245    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:344,27,0
1    109337572    rs1149158    A    C    54.87    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=6.86;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495245    GT:AD:DP:GQ:PL    0/1:5,3:8:84.87:85,0,186
1    109338861    rs1127635    G    C    614.97    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.889;DB;DP=57;Dels=0.0;FS=1.11;HRun=0;HaplotypeScore=0.5784;MQ=58.86;MQ0=0;MQRankSum=-0.889;QD=10.79;ReadPosRankSum=-0.793;SNPEFF_AMINO_ACID_CHANGE=L372;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109338856_109338994;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370008    GT:AD:DP:GQ:PL    0/1:31,26:57:99:645,0,1043
1    109340604    rs1631385    C    T    247.65    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.852;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.528;QD=11.79;ReadPosRankSum=-2.852;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495245    GT:AD:DP:GQ:PL    0/1:11,10:21:99:278,0,396
1    109342716    rs1277239    A    G    72.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.32;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370008    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,143
1    109351501    rs1149154    A    G    2175.42    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.663;MQ=59.47;MQ0=0;MQRankSum=2.563;QD=19.25;ReadPosRankSum=0.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472099    GT:AD:DP:GQ:PL    0/1:46,67:113:99:2205,0,1460
1    109358755    rs113258146    A    AT    892.30    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.878;DB;DP=67;FS=1.056;HRun=7;HaplotypeScore=133.4188;IndelType=I;MQ=60.32;MQ0=0;MQRankSum=-0.443;QD=13.32;ReadPosRankSum=-0.819;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477908    GT:AD:DP:GQ:PL    0/1:36,31:67:99:931,0,764
1    109359490    rs1277214    A    G    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370001    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    109359502    rs1277213    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370001    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    109363075    rs1333128    T    C    320.64    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=18.86;ReadPosRankSum=-0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357393    GT:AD:DP:GQ:PL    0/1:7,10:17:99:351,0,238
1    109363140    rs1333129    T    C    625.53    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=1.515;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.55;MQ0=0;MQRankSum=0.616;QD=12.27;ReadPosRankSum=-1.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357393    GT:AD:DP:GQ:PL    0/1:29,22:51:99:656,0,875
1    109363232    rs1333130    T    C    674.43    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.485;DB;DP=56;Dels=0.0;FS=2.454;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.715;QD=12.04;ReadPosRankSum=1.487;SNPEFF_AMINO_ACID_CHANGE=K728;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109363167_109363248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370001    GT:AD:DP:GQ:PL    0/1:30,26:56:99:704,0,953
1    109366286    rs7522157    C    T    747.32    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.908;DB;DP=44;Dels=0.0;FS=9.253;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.785;QD=16.98;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=C361Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109366188_109366310;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357393    GT:AD:DP:GQ:PL    0/1:18,26:44:99:777,0,630
1    109366370    rs7522260    C    T    962.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357393    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:995,72,0
1    109369797    rs11102506    T    G    5903.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=172;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.0414;MQ=59.46;MQ0=0;MQRankSum=0.371;QD=34.32;ReadPosRankSum=1.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357393    GT:AD:DP:GQ:PL    1/1:1,171:172:99:5904,445,0
1    109369915    rs7551421    G    T    4713.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.7262;MQ=59.51;MQ0=0;QD=33.67;SNPEFF_AMINO_ACID_CHANGE=N323K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109369827_109369924;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357393    GT:AD:DP:GQ:PL    1/1:0,140:140:99:4713,370,0
1    109377157    rs112859436    TA    T    83.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=13;HaplotypeScore=23.3263;IndelType=D;MQ=56.62;MQ0=0;QD=11.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472781    GT:AD:DP:GQ:PL    1/1:0,6:7:17.82:126,18,0
1    109391486    rs1149142    G    A    4601.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.59;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357393    GT:AD:DP:GQ:PL    1/1:0,125:125:99:4602,343,0
1    109391961    rs1277201    T    G    238.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357393    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:272,21,0
1    109395105    rs1277207    C    T    3312.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=S61N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109394294_109395339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKNAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369994    GT:AD:DP:GQ:PL    1/1:0,94:95:99:3313,241,0
1    109514347    rs536912    C    A    167.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357672    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
1    109529322    rs78487462    T    TAA    828.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=1;HaplotypeScore=38.4611;IndelType=I;MQ=59.18;MQ0=0;QD=55.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357672    GT:AD:DP:GQ:PL    1/1:1,14:15:45.15:870,45,0
1    109534940    rs337296    G    A    2238.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6616;MQ=35.77;MQ0=18;QD=24.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357672    GT:AD:DP:GQ:PL    1/1:1,92:93:99:2272,184,0
1    109545046    rs184606    C    T    338.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357672    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:372,30,0
1    109618257    rs673365    C    T    85.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TAF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338366    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    109637157    rs192334124    G    C    475.92    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.017;DB;DP=35;Dels=0.0;FS=6.953;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.904;QD=13.6;ReadPosRankSum=1.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM167B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473828    GT:AD:DP:GQ:PL    0/1:16,19:35:99:506,0,533
1    109649162    rs62623711    G    A    2026.51    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.374;DB;DP=156;Dels=0.0;FS=7.132;HRun=1;HaplotypeScore=1.6006;MQ=59.85;MQ0=0;MQRankSum=0.22;QD=12.99;ReadPosRankSum=-0.066;SNPEFF_AMINO_ACID_CHANGE=S106F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109649157_109649281;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf194;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369945    GT:AD:DP:GQ:PL    0/1:79,76:156:99:2057,0,2610
1    109656420    rs536176    T    C    100.90    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=6.73;ReadPosRankSum=0.058;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf194;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369942    GT:AD:DP:GQ:PL    0/1:8,7:15:99:131,0,238
1    109656946    rs667524    T    C    104.38    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=13.05;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=H47;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109656623_109656958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    0/1:2,6:8:56.65:134,0,57
1    109704390    rs643197    C    G    427.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    1/1:0,18:18:39.11:460,39,0
1    109704618    rs678238    A    G    1061.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.9;SNPEFF_AMINO_ACID_CHANGE=I86V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109704516_109704636;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    1/1:0,28:28:84.27:1094,84,0
1    109714750    rs2297758    T    C    241.73    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.495;QD=16.12;ReadPosRankSum=-0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531664    GT:AD:DP:GQ:PL    0/1:4,11:15:86.79:272,0,87
1    109727475    rs649531    T    C    172.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:205,18,0
1    109727653    rs113927842    CT    C    1214.89    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=6.801;DB;DP=93;FS=7.655;HRun=3;HaplotypeScore=264.8406;IndelType=D;MQ=60.17;MQ0=0;MQRankSum=1.079;QD=13.06;ReadPosRankSum=0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    0/1:49,44:93:99:1254,0,1748
1    109727832    rs12239854    A    G    467.82    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.081;DB;DP=28;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=16.71;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    0/1:13,14:28:99:498,0,403
1    109727880    rs41279684    T    C    189.02    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=18.9;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    0/1:3,7:10:95.66:219,0,96
1    109730511    rs116416309    T    C    79.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.98;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:110,0,30
1    109732387    rs17034092    G    C    93.41    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=11.68;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    0/1:3,5:8:94.95:123,0,95
1    109734541    rs645128    C    T    902.45    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.406;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.255;QD=17.7;ReadPosRankSum=1.538;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490758    GT:AD:DP:GQ:PL    0/1:24,27:51:99:932,0,756
1    109740306    .    T    TGA    465.58    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DP=19;FS=0.0;HRun=0;HaplotypeScore=122.2958;IndelType=I;MQ=64.93;MQ0=0;MQRankSum=2.763;QD=24.5;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    0/1:6,13:19:99:505,0,164
1    109743122    rs10745351    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    109743167    rs17034354    A    C    37.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.736;QD=12.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:68,0,33
1    109745618    rs1052878    T    C    3210.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6281;MQ=59.04;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=L1009P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109745566_109745851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1324;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369939    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3243,247,0
1    109771063    rs683182    T    C    1855.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234677    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1888,135,0
1    109771881    rs657511    G    T    1363.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234677    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1397,108,0
1    109774026    rs600711    G    A    86.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234677    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
1    109778577    rs658092    T    C    998.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471705    GT:AD:DP:GQ:PL    1/1:0,33:33:81.23:1031,81,0
1    109779556    rs631927    T    A    791.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471705    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:825,60,0
1    109779621    rs11439617    T    TC    497.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=56.5643;IndelType=I;MQ=58.66;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471705    GT:AD:DP:GQ:PL    1/1:1,13:13:36.12:540,36,0
1    109792735    rs59201433    A    ACGC    200.85    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=71.0166;IndelType=I;MQ=54.99;MQ0=0;MQRankSum=0.956;QD=18.26;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=T12TP;SNPEFF_CODON_CHANGE=acg/aCGCcg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_109792641_109796011;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:6,5:11:87.69:240,0,88
1    109794252    rs454107    T    C    845.16    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.029;DB;DP=77;Dels=0.0;FS=0.942;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.304;QD=10.98;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=S517;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109792641_109796011;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:43,34:77:99:875,0,1351
1    109795026    rs413380    T    C    744.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.708;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8928;MQ=59.42;MQ0=0;MQRankSum=0.585;QD=18.61;ReadPosRankSum=-0.154;SNPEFF_AMINO_ACID_CHANGE=Y775;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109792641_109796011;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:13,26:40:99:774,0,367
1    109795608    rs437444    T    C    1103.38    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=66;Dels=0.0;FS=10.648;HRun=1;HaplotypeScore=1.6483;MQ=59.65;MQ0=0;MQRankSum=-0.103;QD=16.72;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=F969;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109792641_109796011;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:29,37:66:99:1133,0,865
1    109806442    rs1337248    C    A    273.47    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DB;DP=17;Dels=0.0;FS=5.653;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.96;QD=16.09;ReadPosRankSum=-1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:6,11:17:99:303,0,202
1    109806834    rs6698843    C    T    490.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.836;DB;DP=38;Dels=0.0;FS=13.255;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.015;QD=12.58;ReadPosRankSum=-0.167;SNPEFF_AMINO_ACID_CHANGE=P1712;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109806700_109806987;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:19,19:38:99:521,0,578
1    109807099    rs6689614    G    A    680.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.83;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.13;QD=13.61;ReadPosRankSum=-1.41;SNPEFF_AMINO_ACID_CHANGE=P1771;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109807076_109807250;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:25,25:50:99:711,0,732
1    109807283    rs6657811    A    T    787.38    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=2.362;DB;DP=49;Dels=0.0;FS=1.269;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=16.07;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:22,27:49:99:817,0,688
1    109813020    rs3895559    G    A    410.71    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=36;Dels=0.0;FS=6.805;HRun=0;HaplotypeScore=1.2434;MQ=59.23;MQ0=0;MQRankSum=1.135;QD=11.41;ReadPosRankSum=-1.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459940    GT:AD:DP:GQ:PL    0/1:18,17:36:99:441,0,418
1    109815074    rs79868705    G    A    338.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.564;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.051;QD=13.02;ReadPosRankSum=0.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:13,13:26:99:368,0,413
1    109815133    rs79482788    G    A    319.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=15;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-2.021;QD=21.29;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:5,10:15:99:349,0,166
1    109815211    rs75951814    C    A    124.50    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.32;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:6,5:11:99:154,0,201
1    109815214    rs113683670    T    TG    144.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=53.0993;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=14.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:5,5:10:99:183,0,117
1    109815252    rs611917    A    G    218.41    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=10.92;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:11,9:20:99:248,0,326
1    109815368    rs6670347    T    C    511.47    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=38;Dels=0.0;FS=1.494;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.892;QD=13.46;ReadPosRankSum=-0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:20,18:38:99:541,0,686
1    109815746    rs6667814    A    G    371.44    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.099;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.27;QD=12.38;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    0/1:16,14:30:99:401,0,507
1    109816176    rs441853    A    C    238.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_AMINO_ACID_CHANGE=G2876;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109816058_109816292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271332    GT:AD:DP:GQ:PL    1/1:0,11:11:24.04:272,24,0
1    109825360    rs643457    C    T    1336.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSRC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000369909    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1370,99,0
1    109836842    rs646335    C    G    761.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.777;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.375;QD=26.28;ReadPosRankSum=-0.777;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYBPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477962    GT:AD:DP:GQ:PL    1/1:1,28:29:23.98:795,24,0
1    109838116    rs632514    C    T    73.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYBPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357155    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
1    109838833    rs616899    T    C    994.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYBPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357155    GT:AD:DP:GQ:PL    1/1:0,35:35:81.24:1027,81,0
1    109838918    rs629001    C    T    1824.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.2669;MQ=56.24;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=D269N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109838856_109838992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYBPHL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357155    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1857,141,0
1    109839392    rs604349    A    G    996.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=26.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYBPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357155    GT:AD:DP:GQ:PL    1/1:0,38:38:84.24:1029,84,0
1    109839433    rs1278285    A    G    1576.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=28.67;SNPEFF_AMINO_ACID_CHANGE=T234;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109839405_109839564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYBPHL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357155    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1610,120,0
1    109839954    rs603624    G    C    390.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYBPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357155    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:424,33,0
1    109840629    rs600806    G    A    243.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYBPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357155    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
1    109856842    rs56356949    T    TG    36.16    QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=42;FS=1.971;HRun=11;HaplotypeScore=388.4775;IndelType=I;MQ=51.27;MQ0=0;MQRankSum=0.206;QD=0.86;ReadPosRankSum=-0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256637    GT:AD:DP:GQ:PL    0/1:30,10:42:75.18:75,0,248
1    109883576    rs3217347    C    CAT    403.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=18.9344;IndelType=I;MQ=59.83;MQ0=0;QD=50.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256637    GT:AD:DP:GQ:PL    1/1:0,7:8:24.08:445,24,0
1    109884775    rs2228604    T    G    988.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.88;SNPEFF_AMINO_ACID_CHANGE=T186;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109884636_109884780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538502    GT:AD:DP:GQ:PL    1/1:0,31:31:84.22:1021,84,0
1    109897103    rs11142    A    G    1844.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_AMINO_ACID_CHANGE=F198;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_109896989_109897153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256637    GT:AD:DP:GQ:PL    1/1:0,61:62:99:1878,141,0
1    109954355    rs11102979    C    G    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477897    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
1    109955010    rs2303875    C    A    36.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491287    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
1    109958035    rs1465607    T    C    1099.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271308    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1133,84,0
1    110018148    rs530565    C    T    622.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369872    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:655,51,0
1    110037709    rs45448998    C    T    1232.84    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.284;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=59.49;MQ0=0;MQRankSum=-0.761;QD=13.7;ReadPosRankSum=-0.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN7L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369869    GT:AD:DP:GQ:PL    0/1:48,42:90:99:1263,0,1489
1    110148974    rs1799875    C    T    876.73    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=72;Dels=0.0;FS=0.918;HRun=0;HaplotypeScore=1.9913;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=12.18;ReadPosRankSum=-2.319;SNPEFF_AMINO_ACID_CHANGE=T182;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110148930_110149058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351050    GT:AD:DP:GQ:PL    0/1:37,35:72:99:907,0,1122
1    110152598    rs144839241    TG    T    1060.47    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=6.742;DB;DP=76;FS=1.582;HRun=2;HaplotypeScore=190.8154;IndelType=D;MQ=60.14;MQ0=0;MQRankSum=-0.921;QD=13.95;ReadPosRankSum=1.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351050    GT:AD:DP:GQ:PL    0/1:42,34:76:99:1099,0,1610
1    110155275    rs41313290    G    A    434.80    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7803;MQ=60.0;MQ0=0;MQRankSum=0.396;QD=25.58;ReadPosRankSum=1.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351050    GT:AD:DP:GQ:PL    0/1:4,13:17:99:465,0,111
1    110168888    rs493972    C    G    815.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528270    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:848,63,0
1    110169190    rs865774    C    T    127.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=15;Dels=0.0;FS=9.59;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.333;QD=8.52;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459643    GT:AD:DP:GQ:PL    0/1:9,6:15:99:158,0,293
1    110169957    rs524998    A    G    1938.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=59.31;MQ0=0;QD=28.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459643    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1972,159,0
1    110170896    rs863978    T    C    805.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.21;SNPEFF_AMINO_ACID_CHANGE=H359;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110170705_110170899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393688    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:838,66,0
1    110171705    rs523786    A    C    867.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459643    GT:AD:DP:GQ:PL    1/1:0,28:28:66.22:901,66,0
1    110172346    rs5776989    T    TG    1055.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=5;HaplotypeScore=130.5224;IndelType=I;MQ=61.04;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459643    GT:AD:DP:GQ:PL    1/1:3,28:31:84.27:1097,84,0
1    110172362    rs2269341    C    T    665.43    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=1.018;DB;DP=39;Dels=0.0;FS=1.478;HRun=0;HaplotypeScore=3.857;MQ=60.24;MQ0=0;MQRankSum=-0.705;QD=17.06;ReadPosRankSum=-0.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459643    GT:AD:DP:GQ:PL    0/1:14,23:39:99:695,0,408
1    110172658    rs34592756    A    G    407.45    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.931;DB;DP=36;Dels=0.0;FS=2.083;HRun=0;HaplotypeScore=0.9469;MQ=59.36;MQ0=0;MQRankSum=1.957;QD=11.32;ReadPosRankSum=-0.963;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459643    GT:AD:DP:GQ:PL    0/1:21,15:36:99:437,0,711
1    110173775    rs568686    G    T    73.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.7;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459643    GT:AD:DP:GQ:PL    0/1:2,3:5:67.60:103,0,68
1    110199225    rs143325571    TG    T    154.15    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=29;FS=0.0;HRun=10;HaplotypeScore=249.6021;IndelType=D;MQ=49.98;MQ0=0;MQRankSum=0.4;QD=5.32;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326729    GT:AD:DP:GQ:PL    0/1:21,8:29:97.78:193,0,98
1    110201580    rs650985    C    T    7108.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=197;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.38;MQ0=0;QD=36.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461767    GT:AD:DP:GQ:PL    1/1:0,197:197:99:7108,536,0
1    110201699    rs506008    T    C    2803.80    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=3.931;DB;DP=234;DS;Dels=0.0;FS=9.581;HRun=2;HaplotypeScore=1.9459;MQ=51.29;MQ0=1;MQRankSum=-8.745;QD=11.98;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=F117;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110201622_110201732;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336075    GT:AD:DP:GQ:PL    0/1:118,116:234:99:2834,0,3688
1    110201809    rs562996    G    T    2255.69    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.04;DB;DP=159;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=56.12;MQ0=0;MQRankSum=-2.295;QD=14.19;ReadPosRankSum=1.426;SNPEFF_AMINO_ACID_CHANGE=S174I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110201622_110204364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369833    GT:AD:DP:GQ:PL    0/1:83,76:159:99:2286,0,2694
1    110201812    rs563003    A    G    2270.20    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=5.444;DB;DP=154;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=56.04;MQ0=0;MQRankSum=-0.929;QD=14.74;ReadPosRankSum=1.182;SNPEFF_AMINO_ACID_CHANGE=Y175C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110201622_110204364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369833    GT:AD:DP:GQ:PL    0/1:79,75:154:99:2300,0,2535
1    110210780    rs530021    C    G    425.98    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.603;DB;DP=37;Dels=0.0;FS=1.696;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=11.51;ReadPosRankSum=-1.841;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326729    GT:AD:DP:GQ:PL    0/1:22,15:37:99:456,0,720
1    110210818    rs2073483    C    T    186.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.439;DB;DP=24;Dels=0.0;FS=2.066;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.153;QD=7.79;ReadPosRankSum=0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326729    GT:AD:DP:GQ:PL    0/1:16,8:24:99:217,0,418
1    110211835    rs402505    T    C    1127.83    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=3.374;DB;DP=102;Dels=0.0;FS=1.687;HRun=0;HaplotypeScore=2.655;MQ=45.19;MQ0=1;MQRankSum=-8.042;QD=11.06;ReadPosRankSum=-2.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481656    GT:AD:DP:GQ:PL    0/1:52,50:102:99:1158,0,1752
1    110254678    rs1758104    G    T    106.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369831    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:139,12,0
1    110255174    rs929166    T    G    426.80    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.174;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9559;MQ=57.95;MQ0=0;MQRankSum=0.046;QD=7.49;ReadPosRankSum=-0.541;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369831    GT:AD:DP:GQ:PL    0/1:35,22:57:99:457,0,1022
1    110256548    rs190559770    A    G    79.33    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.87;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369831    GT:AD:DP:GQ:PL    0/1:1,4:5:27.97:109,0,28
1    110279701    rs7483    C    T    780.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.95;DB;DP=52;Dels=0.0;FS=4.575;HRun=0;HaplotypeScore=0.6651;MQ=59.64;MQ0=0;MQRankSum=-0.556;QD=15.01;ReadPosRankSum=0.744;SNPEFF_AMINO_ACID_CHANGE=V224I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110276554_110279791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256594    GT:AD:DP:GQ:PL    0/1:26,26:52:99:810,0,812
1    110279821    rs1537234    C    A    741.09    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=4.805;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.557;QD=17.23;ReadPosRankSum=-0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256594    GT:AD:DP:GQ:PL    0/1:16,27:43:99:771,0,366
1    110279914    rs1571858    C    T    96.87    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.678;QD=8.81;ReadPosRankSum=2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256594    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,252
1    110281941    rs10735234    G    A    771.75    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=5.135;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.931;QD=13.31;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256594    GT:AD:DP:GQ:PL    0/1:32,26:58:99:802,0,815
1    110282972    rs1332018    G    T    233.57    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.218;DB;DP=21;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.8667;MQ=57.99;MQ0=0;MQRankSum=0.106;QD=11.12;ReadPosRankSum=0.458;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_110282862_110283138;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256594    GT:AD:DP:GQ:PL    0/1:11,10:21:99:264,0,366
1    110293989    rs45612540    A    G    157.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.201;DB;DP=18;Dels=0.0;FS=6.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.89;QD=8.74;ReadPosRankSum=0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475725    GT:AD:DP:GQ:PL    0/1:12,6:18:99:187,0,367
1    110294577    rs2274536    A    G    278.64    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.272;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.23;MQ0=0;MQRankSum=0.849;QD=9.29;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361852    GT:AD:DP:GQ:PL    0/1:17,13:30:99:309,0,463
1    110295643    rs1887546    G    T    68.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.35;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361852    GT:AD:DP:GQ:PL    0/1:3,3:6:98.08:98,0,99
1    110295772    rs1887547    T    C    323.05    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=27;Dels=0.0;FS=9.204;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.024;QD=11.96;ReadPosRankSum=0.655;SNPEFF_AMINO_ACID_CHANGE=S389;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110295739_110295820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361852    GT:AD:DP:GQ:PL    0/1:13,14:27:99:353,0,430
1    110299550    rs2094469    A    G    1363.17    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.79;MQ=59.77;MQ0=0;MQRankSum=-0.227;QD=13.63;ReadPosRankSum=-1.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472325    GT:AD:DP:GQ:PL    0/1:50,49:99:99:1393,0,1439
1    110299691    rs11102001    G    A    1280.26    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=89;Dels=0.0;FS=12.376;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.675;QD=14.38;ReadPosRankSum=-0.515;SNPEFF_AMINO_ACID_CHANGE=P356S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110299639_110299787;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361852    GT:AD:DP:GQ:PL    0/1:40,49:89:99:1310,0,1224
1    110300277    rs11102002    C    T    114.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=7.16;ReadPosRankSum=-0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472325    GT:AD:DP:GQ:PL    0/1:10,6:16:99:144,0,358
1    110300504    rs10776700    A    G    2937.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5678;MQ=58.78;MQ0=0;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472325    GT:AD:DP:GQ:PL    1/1:0,87:88:99:2971,229,0
1    110301260    rs6693815    C    T    614.80    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=61;Dels=0.0;FS=9.702;HRun=1;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=-0.274;QD=10.08;ReadPosRankSum=-1.46;SNPEFF_AMINO_ACID_CHANGE=G163S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110301146_110301285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361852    GT:AD:DP:GQ:PL    0/1:32,29:61:99:645,0,994
1    110301766    rs35360175    AGTGTGTGT    A    370.42    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=168.6843;IndelType=D;MQ=49.29;MQ0=0;MQRankSum=0.583;QD=19.5;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472325    GT:AD:DP:GQ:PL    0/1:13,5:19:99:409,0,221
1    110304537    rs6676659    G    A    39.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.88;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361852    GT:AD:DP:GQ:PL    0/1:3,2:5:69.41:69,0,111
1    110466338    rs333970    C    A    2243.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=32.51;SNPEFF_AMINO_ACID_CHANGE=T365;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110465788_110466812;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329608    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2276,169,0
1    110466709    rs333971    T    C    1675.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=F191S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110466682_110466812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420111    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1709,129,0
1    110467745    rs333972    A    G    2700.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.7;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488198    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2733,205,0
1    110558276    rs11384766    A    AC    189.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=13.3355;IndelType=I;MQ=60.0;MQ0=0;QD=37.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475081    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:231,15,0
1    110589579    rs1965990    G    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535003    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:79,6,0
1    110716511    rs12747833    C    T    296.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=30;Dels=0.0;FS=8.994;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-2.011;QD=9.87;ReadPosRankSum=0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331565    GT:AD:DP:GQ:PL    0/1:18,12:30:99:326,0,563
1    110735037    rs2603583    T    G    89.81    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=3.09;HRun=2;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.597;QD=8.16;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331565    GT:AD:DP:GQ:PL    0/1:7,4:11:99:120,0,210
1    110738296    rs2784140    G    A    393.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.23;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.416;QD=14.04;ReadPosRankSum=-0.209;SNPEFF_AMINO_ACID_CHANGE=S527;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110738208_110738367;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331565    GT:AD:DP:GQ:PL    0/1:12,16:28:99:423,0,324
1    110739864    rs2761442    A    G    31.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.2;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465159    GT:AD:DP:GQ:PL    0/1:4,2:6:61.16:61,0,149
1    110740688    rs2761445    C    T    321.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.116;QD=15.33;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465159    GT:AD:DP:GQ:PL    0/1:9,12:21:99:352,0,222
1    110765535    rs611587    C    G    318.11    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.725;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.711;QD=17.67;ReadPosRankSum=-1.777;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KCNC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369787    GT:AD:DP:GQ:PL    0/1:3,15:18:80.71:348,0,81
1    110946294    rs12135220    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256644    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    110950277    rs6698159    G    A    548.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.89;SNPEFF_AMINO_ACID_CHANGE=P71L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110950208_110950564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBXIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256644    GT:AD:DP:GQ:PL    1/1:0,19:19:45.12:582,45,0
1    110950439    rs6674775    C    T    470.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_AMINO_ACID_CHANGE=S17N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110950208_110950564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBXIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256644    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:503,39,0
1    110993739    rs3806451    C    A    134.78    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=19.25;ReadPosRankSum=-0.922;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271331    GT:AD:DP:GQ:PL    0/1:2,5:7:52.25:165,0,52
1    110998665    rs7513898    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271331    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:72,0,28
1    110998766    rs7551116    T    A    326.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.615;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=12.55;ReadPosRankSum=-1.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271331    GT:AD:DP:GQ:PL    0/1:13,13:26:99:356,0,470
1    110998854    rs7514102    G    A    967.29    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.243;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=15.6;ReadPosRankSum=1.093;SNPEFF_AMINO_ACID_CHANGE=V67I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_110998854_110999976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271331    GT:AD:DP:GQ:PL    0/1:27,35:62:99:997,0,856
1    111059812    rs3841846    C    CGA    377.06    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.605;DB;DP=23;FS=3.424;HRun=0;HaplotypeScore=68.1225;IndelType=I;MQ=60.93;MQ0=0;MQRankSum=1.747;QD=16.39;ReadPosRankSum=-0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369771    GT:AD:DP:GQ:PL    0/1:12,10:23:99:416,0,339
1    111060669    rs1281175    T    C    695.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=59.54;MQ0=0;MQRankSum=0.05;QD=13.92;ReadPosRankSum=0.35;SNPEFF_AMINO_ACID_CHANGE=L247;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111059839_111061797;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369771    GT:AD:DP:GQ:PL    0/1:25,25:50:99:726,0,787
1    111060752    rs34970857    C    T    503.32    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.612;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=15.25;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=V220M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111059839_111061797;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369771    GT:AD:DP:GQ:PL    0/1:16,17:33:99:533,0,405
1    111061062    rs1281174    T    C    1102.59    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.902;DB;DP=71;Dels=0.0;FS=1.002;HRun=0;HaplotypeScore=0.8321;MQ=59.68;MQ0=0;MQRankSum=-1.203;QD=15.53;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=E116;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111059839_111061797;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369771    GT:AD:DP:GQ:PL    0/1:27,43:71:99:1133,0,806
1    111144526    rs4839071    T    G    430.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316361    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:464,36,0
1    111144955    rs6701118    C    T    36.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316361    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:67,0,33
1    111146220    rs78349687    C    G    735.27    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.877;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.925;QD=12.9;ReadPosRankSum=1.01;SNPEFF_AMINO_ACID_CHANGE=A395;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111145876_111147567;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316361    GT:AD:DP:GQ:PL    0/1:32,25:57:99:765,0,945
1    111195397    rs61803548    T    C    249.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.19;MQ0=1;QD=24.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL365361.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408611    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:282,24,0
1    111195566    rs35174060    ATGTGTGTGTGTGTG    A    1077    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=317.7181;IndelType=D;MQ=47.21;MQ0=0;QD=43.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL365361.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408611    GT:AD:DP:GQ:PL    1/1:14,8:25:33.11:1119,33,0
1    111391108    rs4021407    T    G    140.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=18;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.5784;MQ=48.49;MQ0=0;MQRankSum=-3.464;QD=7.79;ReadPosRankSum=-0.439;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-498A13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432731    GT:AD:DP:GQ:PL    0/1:10,8:18:99:170,0,292
1    111391160    rs112029824    C    T    279.33    MQFilter40    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.434;DB;DP=30;Dels=0.0;FS=6.226;HRun=1;HaplotypeScore=0.7887;MQ=36.09;MQ0=1;MQRankSum=-2.171;QD=9.31;ReadPosRankSum=0.855;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-498A13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432731    GT:AD:DP:GQ:PL    0/1:17,13:30:99:309,0,449
1    111391381    rs6685507    A    G    902.45    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.647;DB;DP=69;Dels=0.0;FS=4.872;HRun=0;HaplotypeScore=0.0;MQ=57.06;MQ0=0;MQRankSum=1.465;QD=13.08;ReadPosRankSum=-1.059;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-498A13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432731    GT:AD:DP:GQ:PL    0/1:31,38:69:99:932,0,940
1    111391513    rs12750061    C    T    440.57    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.482;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.008;QD=14.21;ReadPosRankSum=0.692;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-498A13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432731    GT:AD:DP:GQ:PL    0/1:15,16:31:99:471,0,378
1    111434778    rs112679591    C    G    78.01    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.6;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271324    GT:AD:DP:GQ:PL    0/1:2,3:5:68.60:108,0,69
1    111441858    rs12030938    G    A    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.91;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468160    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,144
1    111661413    rs325916    T    C    134.05    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=9.58;ReadPosRankSum=0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462092    GT:AD:DP:GQ:PL    0/1:9,5:14:99:164,0,332
1    111661528    rs325917    T    C    85.56    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.317;DB;DP=20;Dels=0.0;FS=5.746;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.087;QD=4.28;ReadPosRankSum=-1.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462092    GT:AD:DP:GQ:PL    0/1:15,5:20:99:116,0,459
1    111662952    rs325919    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462092    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    111704013    rs143092939    TAA    T    387.17    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=63.2332;IndelType=D;MQ=59.42;MQ0=0;MQRankSum=0.951;QD=18.44;ReadPosRankSum=-0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476865    GT:AD:DP:GQ:PL    0/1:11,10:21:99:426,0,608
1    111726026    rs2243393    G    A    674.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=44;Dels=0.0;FS=7.062;HRun=0;HaplotypeScore=0.8941;MQ=59.58;MQ0=0;MQRankSum=1.068;QD=15.34;ReadPosRankSum=2.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DENND2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357640    GT:AD:DP:GQ:PL    0/1:22,22:44:99:705,0,746
1    111726213    rs694180    A    G    1521.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.814;DB;DP=110;Dels=0.0;FS=8.979;HRun=1;HaplotypeScore=1.7552;MQ=59.58;MQ0=0;MQRankSum=-0.849;QD=13.83;ReadPosRankSum=-1.357;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483427    GT:AD:DP:GQ:PL    0/1:55,55:110:99:1551,0,1828
1    111737183    rs660173    C    T    998.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DENND2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463713    GT:AD:DP:GQ:PL    1/1:0,29:30:78.25:1032,78,0
1    111739749    rs11590991    C    T    123.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.932;QD=10.26;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DENND2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473822    GT:AD:DP:GQ:PL    0/1:7,5:12:99:153,0,174
1    111770423    rs755467    T    G    358.96    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=13.29;ReadPosRankSum=0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369744    GT:AD:DP:GQ:PL    0/1:14,13:27:99:389,0,432
1    111773307    rs75230690    T    C    67.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.2;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369744    GT:AD:DP:GQ:PL    0/1:2,4:6:66.03:97,0,66
1    111778241    rs2764544    C    T    2268.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;QD=36.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526684    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2302,172,0
1    111778325    rs11556868    C    T    648.03    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.538;DB;DP=52;Dels=0.0;FS=7.992;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.745;QD=12.23;ReadPosRankSum=-0.217;SNPEFF_AMINO_ACID_CHANGE=A103V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111778261_111778385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000466741    GT:AD:DP:GQ:PL    0/1:27,24:52:99:678,0,829
1    111778468    rs961364    G    A    482.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=35;Dels=0.0;FS=3.179;HRun=1;HaplotypeScore=1.9075;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=13.78;ReadPosRankSum=-1.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486561    GT:AD:DP:GQ:PL    0/1:15,20:35:99:512,0,458
1    111778824    rs2251608    T    C    268.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=59.15;MQ0=0;MQRankSum=1.051;QD=12.21;ReadPosRankSum=0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467038    GT:AD:DP:GQ:PL    0/1:11,11:22:99:299,0,353
1    111783996    rs2494007    A    G    1659.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=Q115;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111783949_111784065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000497220    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1693,123,0
1    111784148    rs2764551    T    G    406.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477185    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:440,33,0
1    111784816    rs11102221    G    A    797.08    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.65;DB;DP=61;Dels=0.0;FS=1.058;HRun=2;HaplotypeScore=1.6208;MQ=59.62;MQ0=0;MQRankSum=-0.052;QD=13.07;ReadPosRankSum=-1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477185    GT:AD:DP:GQ:PL    0/1:30,31:61:99:827,0,820
1    111826055    rs12140873    A    G    2132.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=31.13;MQ0=10;QD=25.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-165H20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369743    GT:AD:DP:GQ:PL    1/1:6,78:84:99:2166,189,0
1    111853174    rs56387509    C    T    661.58    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.62;MQ0=0;MQRankSum=-0.955;QD=13.5;ReadPosRankSum=0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    0/1:27,22:49:99:692,0,869
1    111854096    rs4839121    A    G    222.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:255,21,0
1    111854120    rs12127313    G    A    111.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.96;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,118
1    111854207    rs4839122    T    C    2017.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=39.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    1/1:0,51:51:99:2051,150,0
1    111854223    rs6537695    C    T    2107.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=37.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2141,166,0
1    111854755    rs4423003    A    C    1432.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1465,114,0
1    111857087    rs2786151    C    T    438.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.584;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.039;QD=20.88;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    0/1:6,15:21:99:468,0,191
1    111857154    rs2786152    T    C    1739.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1773,138,0
1    111857276    rs41391244    T    C    191.66    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.933;DB;DP=21;Dels=0.0;FS=4.191;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=9.13;ReadPosRankSum=1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    0/1:13,8:21:99:222,0,475
1    111857951    rs61756687    A    G    2482.17    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=148;Dels=0.0;FS=5.235;HRun=0;HaplotypeScore=3.1833;MQ=59.52;MQ0=0;MQRankSum=0.361;QD=16.77;ReadPosRankSum=-1.488;SNPEFF_AMINO_ACID_CHANGE=K125R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111857892_111858057;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    0/1:65,83:148:99:2512,0,1972
1    111858200    rs41282500    G    A    32.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
1    111861714    rs2786161    T    A    1063.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.3;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343320    GT:AD:DP:GQ:PL    1/1:1,32:33:84.27:1096,84,0
1    111861841    rs2275253    A    G    2134.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=I178V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111861742_111861861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353665    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2167,171,0
1    111861974    rs2275254    T    C    1861.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=F193S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111861949_111862090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353665    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1895,144,0
1    111862952    rs2256721    T    G    1290.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=36.88;SNPEFF_AMINO_ACID_CHANGE=V271G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111862835_111863097;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353665    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1324,99,0
1    111890240    .    C    CT    741.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.1;DP=37;FS=0.0;HRun=6;HaplotypeScore=346.9953;IndelType=I;MQ=45.1;MQ0=0;MQRankSum=0.907;QD=20.03;ReadPosRankSum=-0.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369737    GT:AD:DP:GQ:PL    1/1:22,14:37:53.95:783,54,0
1    111890941    rs3738304    G    A    241.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=17.24;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369737    GT:AD:DP:GQ:PL    0/1:6,8:14:99:271,0,176
1    111892905    rs3820443    T    C    1361.84    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.861;DB;DP=91;Dels=0.0;FS=1.112;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=14.97;ReadPosRankSum=-1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369737    GT:AD:DP:GQ:PL    0/1:47,44:91:99:1392,0,1517
1    111892994    rs12033188    C    G    309.87    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.352;QD=14.08;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369737    GT:AD:DP:GQ:PL    0/1:12,10:22:99:340,0,416
1    111893958    rs1668    A    G    694.95    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.61;DB;DP=40;Dels=0.0;FS=2.99;HRun=0;HaplotypeScore=0.0;MQ=54.58;MQ0=0;MQRankSum=2.169;QD=17.37;ReadPosRankSum=-2.056;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468395    GT:AD:DP:GQ:PL    0/1:14,26:40:99:725,0,396
1    111957097    rs7825    C    G    828.83    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=46;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.784;QD=18.02;ReadPosRankSum=-0.241;SNPEFF_AMINO_ACID_CHANGE=E484Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111957026_111957966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVGP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434331    GT:AD:DP:GQ:PL    0/1:17,29:46:99:859,0,503
1    111957245    rs9629    G    A    828.57    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=4.648;DB;DP=58;Dels=0.0;FS=3.946;HRun=0;HaplotypeScore=0.9578;MQ=59.28;MQ0=0;MQRankSum=-1.492;QD=14.29;ReadPosRankSum=0.11;SNPEFF_AMINO_ACID_CHANGE=P434;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111957026_111957966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVGP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434331    GT:AD:DP:GQ:PL    0/1:25,33:58:99:859,0,679
1    111957517    rs3767609    T    C    61.32    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=59;Dels=0.0;FS=3.39;HRun=1;HaplotypeScore=0.0;MQ=57.61;MQ0=0;MQRankSum=-2.898;QD=1.04;ReadPosRankSum=-2.875;SNPEFF_AMINO_ACID_CHANGE=S344G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111957026_111957966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVGP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434331    GT:AD:DP:GQ:PL    0/1:51,8:59:91.32:91,0,1710
1    111957583    rs1126656    A    G    57.36    QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=1.435;DB;DP=53;Dels=0.0;FS=7.583;HRun=0;HaplotypeScore=0.8941;MQ=55.49;MQ0=0;MQRankSum=-3.56;QD=1.08;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=Y322H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111957026_111957966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVGP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434331    GT:AD:DP:GQ:PL    0/1:41,12:53:87.36:87,0,1296
1    111957592    rs56294468    A    G    97.35    QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=2.834;DB;DP=52;Dels=0.0;FS=7.648;HRun=2;HaplotypeScore=1.8273;MQ=55.4;MQ0=0;MQRankSum=-2.813;QD=1.87;ReadPosRankSum=1.727;SNPEFF_AMINO_ACID_CHANGE=S319P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111957026_111957966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVGP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434331    GT:AD:DP:GQ:PL    0/1:40,12:52:99:127,0,1310
1    111957693    rs2485319    A    G    649.37    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.009;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=59.61;MQ0=0;MQRankSum=-0.102;QD=11.01;ReadPosRankSum=1.024;SNPEFF_AMINO_ACID_CHANGE=M285T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_111957026_111957966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVGP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434331    GT:AD:DP:GQ:PL    0/1:33,26:59:99:679,0,966
1    111962455    rs1264881    C    T    470.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.399;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.894;QD=19.6;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369728    GT:AD:DP:GQ:PL    0/1:9,15:24:99:500,0,250
1    111970382    rs115872070    C    T    1611.91    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=2.554;DB;DP=146;Dels=0.0;FS=1.783;HRun=3;HaplotypeScore=2.4084;MQ=57.43;MQ0=0;MQRankSum=-0.09;QD=11.04;ReadPosRankSum=-1.32;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_111970319_111970399;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVGP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369732    GT:AD:DP:GQ:PL    0/1:76,70:146:99:1642,0,2144
1    112020222    rs145497902    GC    G    988.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=6;HaplotypeScore=331.9607;IndelType=D;MQ=56.44;MQ0=0;QD=29.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf162;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343534    GT:AD:DP:GQ:PL    1/1:1,33:34:96.24:1030,96,0
1    112020238    rs2211494    A    C    1431.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.36;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf162;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343534    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1465,114,0
1    112026198    rs9025    T    A    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463993    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
1    112026449    rs17027794    G    A    113.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463993    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:146,12,0
1    112028515    rs72695203    T    C    229.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=20;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.852;QD=11.45;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463993    GT:AD:DP:GQ:PL    0/1:10,10:20:99:259,0,342
1    112028577    rs2275796    A    T    290.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463993    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
1    112029193    rs2252739    A    G    1651.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=31.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463993    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1684,141,0
1    112029325    rs2800906    A    G    498.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355437    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:531,39,0
1    112033456    rs34460629    G    GA    294.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=25.2574;IndelType=I;MQ=62.36;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355437    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:336,24,0
1    112042383    rs923    G    A    112.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486342    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:145,12,0
1    112042632    rs2229155    A    G    1319.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=33.83;SNPEFF_AMINO_ACID_CHANGE=A299;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_112042051_112043178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241356    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1353,105,0
1    112043328    rs2798566    T    C    352.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241356    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:386,30,0
1    112106342    rs1591711    C    T    255.74    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=19.67;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355437    GT:AD:DP:GQ:PL    0/1:5,8:13:99:286,0,155
1    112106444    rs1591712    G    A    2008.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355437    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2041,153,0
1    112234068    rs506070    T    A    185.71    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.585;DB;DP=20;Dels=0.0;FS=2.831;HRun=2;HaplotypeScore=0.9159;MQ=59.06;MQ0=0;MQRankSum=-1.268;QD=9.29;ReadPosRankSum=1.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356415    GT:AD:DP:GQ:PL    0/1:13,7:20:99:216,0,430
1    112234084    rs10489469    G    T    248.49    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.153;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.75;MQ0=0;MQRankSum=2.04;QD=16.57;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356415    GT:AD:DP:GQ:PL    0/1:7,8:15:99:278,0,251
1    112240038    rs34219774    CT    C    146.98    PASS    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=73;FS=0.0;HRun=14;HaplotypeScore=424.2788;IndelType=D;MQ=55.76;MQ0=0;MQRankSum=1.003;QD=2.01;ReadPosRankSum=0.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356415    GT:AD:DP:GQ:PL    0/1:51,15:73:99:186,0,802
1    112251902    rs563083    C    T    370.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.137;QD=13.24;ReadPosRankSum=0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433097    GT:AD:DP:GQ:PL    0/1:16,12:28:99:401,0,574
1    112269872    rs197434    G    A    863.45    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=2.12;DB;DP=53;Dels=0.0;FS=2.407;HRun=2;HaplotypeScore=0.0;MQ=59.04;MQ0=0;MQRankSum=0.688;QD=16.29;ReadPosRankSum=-0.138;SNPEFF_AMINO_ACID_CHANGE=F189;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_112269128_112270426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf183;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444059    GT:AD:DP:GQ:PL    0/1:24,29:53:99:893,0,679
1    112298378    rs28372703    T    C    574.55    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=37;Dels=0.0;FS=3.375;HRun=0;HaplotypeScore=0.5784;MQ=55.48;MQ0=0;MQRankSum=0.198;QD=15.53;ReadPosRankSum=-1.905;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_112297927_112298847;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369702    GT:AD:DP:GQ:PL    0/1:17,20:37:99:605,0,578
1    112302208    rs560170    G    T    843.02    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=0.273;QD=18.73;ReadPosRankSum=1.719;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369702    GT:AD:DP:GQ:PL    0/1:16,29:45:99:873,0,457
1    112302219    rs538779    G    A    743.96    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=38;Dels=0.0;FS=8.059;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.348;QD=19.58;ReadPosRankSum=-0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369702    GT:AD:DP:GQ:PL    0/1:10,28:38:99:774,0,301
1    112304126    rs197405    G    T    34.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.23;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_112303328_112305629;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000475700    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
1    112305406    rs78248378    TA    T    213.86    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=53;FS=0.0;HRun=16;HaplotypeScore=276.5299;IndelType=D;MQ=57.34;MQ0=0;MQRankSum=0.128;QD=4.04;ReadPosRankSum=-0.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524894    GT:AD:DP:GQ:PL    0/1:29,18:53:99:253,0,269
1    112308953    rs197412    T    C    383.88    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.598;DB;DP=38;Dels=0.0;FS=7.321;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=10.1;ReadPosRankSum=0.209;SNPEFF_AMINO_ACID_CHANGE=I244T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_112308359_112310196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000475700    GT:AD:DP:GQ:PL    0/1:23,15:38:99:414,0,775
1    112308972    rs197413    G    A    437.93    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=2.919;QD=10.18;ReadPosRankSum=-0.559;SNPEFF_AMINO_ACID_CHANGE=V250;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_112308359_112310196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000475700    GT:AD:DP:GQ:PL    0/1:26,17:43:99:468,0,861
1    112991698    rs2256883    T    C    1099.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=N78;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_112991564_112991794;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTNBP2NL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271277    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1133,84,0
1    112999227    rs1175641    G    A    3270.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_AMINO_ACID_CHANGE=Q371;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_112998553_113003786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTNBP2NL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271277    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3271,253,0
1    113202417    rs2932536    G    A    344.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPZA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263168    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:377,27,0
1    113234062    .    C    A    103.15    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.63;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MOV10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465579    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:133,0,25
1    113234456    rs2932532    G    A    1377.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6918;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MOV10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465579    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1411,105,0
1    113239478    rs2999158    T    C    104.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=20.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MOV10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479858    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:137,12,0
1    113242488    rs3013431    C    T    4050.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3548;MQ=59.81;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MOV10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471160    GT:AD:DP:GQ:PL    1/1:0,119:119:99:4051,301,0
1    113244433    rs2279500    T    C    454.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MOV10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285733    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:488,39,0
1    113246229    rs937053    T    A    419.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=26.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MOV10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285733    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:452,36,0
1    113252614    rs41310100    C    A    314.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.72;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPM1J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309276    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:348,27,0
1    113254484    rs4839258    A    G    83.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPM1J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482367    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    113255389    rs10857971    C    T    3513.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3391;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=V236I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_113255366_113255653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPM1J;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309276    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3514,256,0
1    113255686    rs36095892    T    TTG    158.53    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=113.9319;IndelType=I;MQ=57.61;MQ0=0;MQRankSum=-0.323;QD=5.28;ReadPosRankSum=-0.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPM1J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486709    GT:AD:DP:GQ:PL    0/1:23,6:30:99:198,0,208
1    113256382    rs45492096    A    C    667.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPM1J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486709    GT:AD:DP:GQ:PL    1/1:0,21:21:63.15:701,63,0
1    113265809    .    G    A    42.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361886    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:72,0,36
1    113456546    rs1049434    A    T    1712.23    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=5.586;DB;DP=128;Dels=0.0;FS=6.697;HRun=1;HaplotypeScore=2.493;MQ=60.0;MQ0=0;MQRankSum=-0.028;QD=13.38;ReadPosRankSum=-0.984;SNPEFF_AMINO_ACID_CHANGE=D490E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_113454469_113456787;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369626    GT:AD:DP:GQ:PL    0/1:68,60:128:99:1742,0,2147
1    113616382    rs67945440    G    GA    260.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=14.0395;IndelType=I;MQ=56.62;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361127    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:302,21,0
1    113636924    rs1216802    T    C    813.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361127    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:846,63,0
1    113642699    .    A    G    75.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.06;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361127    GT:AD:DP:GQ:PL    0/1:2,3:5:65.39:105,0,65
1    113657092    rs1216793    A    C    1881.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9391;MQ=57.65;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=T708;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_113657049_113657498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361127    GT:AD:DP:GQ:PL    1/1:1,57:58:99:1914,144,0
1    113658887    rs1216791    G    A    925.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361127    GT:AD:DP:GQ:PL    1/1:0,30:30:72.21:959,72,0
1    113659065    rs10541977    ACT    A    1328.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=134.9572;IndelType=D;MQ=59.65;MQ0=0;QD=37.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361127    GT:AD:DP:GQ:PL    1/1:3,32:35:93.31:1370,93,0
1    114133022    rs66564339    AT    A    508.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=7;HaplotypeScore=53.7744;IndelType=D;MQ=59.93;MQ0=0;QD=28.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    1/1:0,18:18:54.12:551,54,0
1    114137013    rs10700979    C    CAT    2633.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=116.8568;IndelType=I;MQ=61.23;MQ0=0;QD=52.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    1/1:1,46:50:99:2676,147,0
1    114157023    rs3761931    G    A    223.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=27.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:256,21,0
1    114162194    rs1217192    G    A    177.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
1    114162619    rs1217193    C    G    94.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
1    114191994    rs1743594    G    A    881.61    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.499;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.08;QD=14.22;ReadPosRankSum=0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    0/1:29,33:62:99:912,0,873
1    114196364    rs2359174    T    G    70.78    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=0.787;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.139;QD=3.73;ReadPosRankSum=-0.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    0/1:14,5:19:99:101,0,512
1    114196495    rs2359173    A    G    1692.62    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.217;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=59.85;MQ0=0;MQRankSum=-0.953;QD=10.99;ReadPosRankSum=-0.592;SNPEFF_AMINO_ACID_CHANGE=T828;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114196452_114196640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    0/1:87,67:154:99:1723,0,2681
1    114201994    rs35373114    CTG    C    157.96    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=26.0944;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=-0.736;QD=22.57;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    0/1:2,5:7:35.10:197,0,35
1    114215083    rs67594773    CTCTGA    C    606.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=68.067;IndelType=D;MQ=47.05;MQ0=0;QD=55.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:649,33,0
1    114223635    rs12758546    C    T    79.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=13.19;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    0/1:2,4:6:68.24:109,0,68
1    114224782    rs33933207    A    AT    400.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DB;DP=52;FS=7.132;HRun=16;HaplotypeScore=399.7708;IndelType=I;MQ=55.37;MQ0=0;MQRankSum=-0.375;QD=7.71;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307546    GT:AD:DP:GQ:PL    1/1:18,24:52:1.20:439,1,0
1    114240319    rs3835263    T    TA    1431.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=67.8362;IndelType=I;MQ=60.65;MQ0=0;QD=43.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481652    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1473,99,0
1    114242250    rs3752953    C    T    72.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357783    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:102,0,68
1    114249382    rs6698586    C    T    1325.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357783    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1358,108,0
1    114256139    rs3789597    C    T    121.43    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.29;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357783    GT:AD:DP:GQ:PL    0/1:1,4:5:21.08:151,0,21
1    114267347    rs1230640    C    T    1845.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=36.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472612    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1878,138,0
1    114267645    rs1981319    C    A    170.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472612    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
1    114280717    rs2273758    A    C    1005.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446739    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1038,81,0
1    114309172    rs1935836    C    T    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261441    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,71
1    114339956    rs34169583    C    CTAAA    1612.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=69.7218;IndelType=I;MQ=53.29;MQ0=0;QD=73.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261441    GT:AD:DP:GQ:PL    1/1:2,19:22:63.22:1655,63,0
1    114354654    rs3195954    T    C    205.15    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=12;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.1;ReadPosRankSum=0.896;SNPEFF_AMINO_ACID_CHANGE=P127;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114354332_114355098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSBN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261441    GT:AD:DP:GQ:PL    0/1:5,7:12:99:235,0,121
1    114354942    rs3789604    T    G    598.01    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=1.815;DB;DP=31;Dels=0.0;FS=5.444;HRun=0;HaplotypeScore=0.9665;MQ=57.73;MQ0=0;MQRankSum=0.024;QD=19.29;ReadPosRankSum=0.448;SNPEFF_AMINO_ACID_CHANGE=R31;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114354332_114355098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSBN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261441    GT:AD:DP:GQ:PL    0/1:11,20:31:99:628,0,222
1    114357750    rs1217413    G    A    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420377    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    114372332    rs67670581    TA    T    1010.05    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=3.226;DB;DP=112;FS=1.718;HRun=12;HaplotypeScore=375.1747;IndelType=D;MQ=60.16;MQ0=0;MQRankSum=1.216;QD=9.02;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354605    GT:AD:DP:GQ:PL    0/1:50,60:112:99:1049,0,868
1    114372528    rs3761935    T    G    412.60    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.076;DB;DP=32;Dels=0.0;FS=5.748;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=12.89;ReadPosRankSum=-0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354605    GT:AD:DP:GQ:PL    0/1:17,15:32:99:443,0,608
1    114377093    rs1599971    A    G    1496.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.505;DB;DP=49;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.65;QD=29.92;ReadPosRankSum=1.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354605    GT:AD:DP:GQ:PL    1/1:1,48:49:81.62:1529,82,0
1    114377568    rs2476601    A    G    2895.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.75;MQ0=0;QD=31.13;SNPEFF_AMINO_ACID_CHANGE=W376R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114377532_114377615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538253    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2928,220,0
1    114400195    rs112628093    G    GA    137.33    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=15;FS=0.0;HRun=10;HaplotypeScore=58.1864;IndelType=I;MQ=59.91;MQ0=0;MQRankSum=0.193;QD=9.16;ReadPosRankSum=-1.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529045    GT:AD:DP:GQ:PL    0/1:6,8:15:99:176,0,106
1    114401231    rs1217418    A    G    227.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.256;QD=15.14;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529045    GT:AD:DP:GQ:PL    0/1:5,10:15:99:257,0,153
1    114401904    rs1217419    T    G    1504.67    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=93;Dels=0.0;FS=7.315;HRun=3;HaplotypeScore=0.734;MQ=59.75;MQ0=0;MQRankSum=0.142;QD=16.18;ReadPosRankSum=1.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354605    GT:AD:DP:GQ:PL    0/1:44,49:93:99:1535,0,1437
1    114424601    rs1217381    C    T    1048.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=D90N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114424395_114424619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=BCL2L15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393316    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1081,81,0
1    114442355    rs3838300    C    CA    492.07    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.333;DB;DP=34;FS=0.0;HRun=9;HaplotypeScore=82.322;IndelType=I;MQ=60.32;MQ0=0;MQRankSum=-0.31;QD=14.47;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369564    GT:AD:DP:GQ:PL    0/1:15,19:34:99:531,0,266
1    114443035    rs3789613    C    G    451.44    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.446;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.832;QD=12.54;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256658    GT:AD:DP:GQ:PL    0/1:18,17:36:99:481,0,620
1    114443899    rs17464525    G    A    579.36    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.2;DB;DP=54;Dels=0.0;FS=2.369;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=1.14;QD=10.73;ReadPosRankSum=-2.028;SNPEFF_AMINO_ACID_CHANGE=G117;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114443858_114444005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369564    GT:AD:DP:GQ:PL    0/1:30,24:54:99:609,0,796
1    114447034    rs6661817    G    C    55.98    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.386;QD=4.0;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256658    GT:AD:DP:GQ:PL    0/1:9,5:14:85.98:86,0,336
1    114504860    rs41302825    G    A    192.60    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.809;DB;DP=32;Dels=0.0;FS=2.722;HRun=2;HaplotypeScore=2.4258;MQ=59.28;MQ0=0;MQRankSum=-0.427;QD=6.02;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340480    GT:AD:DP:GQ:PL    0/1:22,10:32:99:223,0,791
1    114505000    rs17852555    G    A    751.25    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.86;DB;DP=53;Dels=0.0;FS=22.332;HRun=1;HaplotypeScore=1.8938;MQ=58.68;MQ0=0;MQRankSum=-0.579;QD=14.17;ReadPosRankSum=-0.401;SNPEFF_AMINO_ACID_CHANGE=P287;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114504939_114505060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369553    GT:AD:DP:GQ:PL    0/1:25,28:53:99:781,0,902
1    114512939    rs3811018    A    T    734.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340480    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:768,57,0
1    114515717    rs2358996    G    A    2565.97    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.122;DB;DP=172;Dels=0.0;FS=0.661;HRun=0;HaplotypeScore=4.1414;MQ=59.19;MQ0=0;MQRankSum=-0.033;QD=14.92;ReadPosRankSum=-1.357;SNPEFF_AMINO_ACID_CHANGE=A1027;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114515646_114520422;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369554    GT:AD:DP:GQ:PL    0/1:83,88:172:99:2596,0,2171
1    114522285    rs12728679    A    G    496.50    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.97;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.701;QD=19.1;ReadPosRankSum=-1.294;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340480    GT:AD:DP:GQ:PL    0/1:9,17:26:99:526,0,297
1    114636226    rs1079093    C    T    72.50    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.36;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369545    GT:AD:DP:GQ:PL    0/1:3,4:7:99:102,0,104
1    114641685    rs2774285    A    G    1020.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369545    GT:AD:DP:GQ:PL    1/1:0,34:34:84.23:1053,84,0
1    114680540    rs17032441    C    T    531.63    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=2.574;DB;DP=53;Dels=0.0;FS=2.407;HRun=0;HaplotypeScore=0.9947;MQ=59.21;MQ0=0;MQRankSum=-1.473;QD=10.03;ReadPosRankSum=0.504;SNPEFF_AMINO_ACID_CHANGE=S131;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114680117_114680675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369546    GT:AD:DP:GQ:PL    0/1:32,21:53:99:562,0,851
1    114682445    rs149181288    G    A    149.51    QDFilter2    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.465;DB;DP=87;Dels=0.0;FS=0.874;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.899;QD=1.72;ReadPosRankSum=1.752;SNPEFF_AMINO_ACID_CHANGE=P102S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114682237_114682585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369545    GT:AD:DP:GQ:PL    0/1:56,31:87:99:180,0,1760
1    114682446    rs151312827    G    A    141.57    QDFilter2    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=1.115;DB;DP=88;Dels=0.0;FS=1.876;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=1.61;ReadPosRankSum=1.826;SNPEFF_AMINO_ACID_CHANGE=P101;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114682237_114682585;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369545    GT:AD:DP:GQ:PL    0/1:57,31:88:99:172,0,1826
1    114682780    rs2774303    G    C    49.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369545    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    114940632    rs71580616    CA    C    1615.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=110;FS=0.0;HRun=12;HaplotypeScore=397.14;IndelType=D;MQ=60.07;MQ0=0;MQRankSum=0.436;QD=14.68;ReadPosRankSum=-0.316;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358465    GT:AD:DP:GQ:PL    1/1:23,81:110:99:1657,177,0
1    114947935    rs1230795    G    A    947.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358465    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:981,75,0
1    114948281    rs6537825    A    G    3381.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0456;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=I472T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_114948032_114948381;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450349    GT:AD:DP:GQ:PL    1/1:1,99:101:99:3381,247,0
1    115110683    rs8128    A    C    4068.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485021    GT:AD:DP:GQ:PL    1/1:0,120:120:99:4069,301,0
1    115119392    rs41274118    T    C    326.36    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.812;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=15.54;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369541    GT:AD:DP:GQ:PL    0/1:9,12:21:99:356,0,279
1    115123747    rs1564824    A    G    323.21    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.811;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.96;ReadPosRankSum=-0.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369540    GT:AD:DP:GQ:PL    0/1:7,11:18:99:353,0,241
1    115128087    rs222493    A    G    37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.25;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393277    GT:AD:DP:GQ:PL    0/1:2,2:4:66.99:67,0,70
1    115130353    rs61000990    C    T    418.53    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.425;DB;DP=43;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=59.57;MQ0=0;MQRankSum=-0.515;QD=9.73;ReadPosRankSum=2.575;SNPEFF_AMINO_ACID_CHANGE=R772;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_115130337_115130573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393277    GT:AD:DP:GQ:PL    0/1:27,16:43:99:449,0,923
1    115137057    rs74115250    C    A    781.28    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=0.488;DB;DP=48;Dels=0.0;FS=1.768;HRun=2;HaplotypeScore=0.6651;MQ=58.73;MQ0=0;MQRankSum=-0.011;QD=16.28;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369540    GT:AD:DP:GQ:PL    0/1:19,29:48:99:811,0,543
1    115137247    rs74115251    G    A    320.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.347;QD=16.02;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369540    GT:AD:DP:GQ:PL    0/1:8,12:20:99:350,0,275
1    115144703    rs28398    A    G    762.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369540    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:795,57,0
1    115164554    rs56861557    C    T    1273.35    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.504;DB;DP=89;Dels=0.0;FS=1.784;HRun=0;HaplotypeScore=1.7998;MQ=59.48;MQ0=0;MQRankSum=-0.017;QD=14.31;ReadPosRankSum=0.873;SNPEFF_AMINO_ACID_CHANGE=G397S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_115164516_115164686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369540    GT:AD:DP:GQ:PL    0/1:43,45:89:99:1303,0,1257
1    115220420    rs72459409    CTCCT    C    235.29    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=157.473;IndelType=D;MQ=52.21;MQ0=0;MQRankSum=0.935;QD=10.23;ReadPosRankSum=1.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353928    GT:AD:DP:GQ:PL    0/1:17,6:22:99:274,0,249
1    115222434    rs761755    G    A    426.98    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.109;QD=14.72;ReadPosRankSum=1.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353928    GT:AD:DP:GQ:PL    0/1:15,14:29:99:457,0,525
1    115231254    rs61752479    G    A    940.59    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=3.353;DB;DP=55;Dels=0.0;FS=5.672;HRun=0;HaplotypeScore=0.9997;MQ=59.16;MQ0=0;MQRankSum=0.316;QD=17.1;ReadPosRankSum=-1.612;SNPEFF_AMINO_ACID_CHANGE=P48L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_115231182_115231362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353928    GT:AD:DP:GQ:PL    0/1:23,32:55:99:971,0,717
1    115236057    rs17602729    G    A    873.40    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.075;DB;DP=67;Dels=0.0;FS=6.713;HRun=0;HaplotypeScore=0.9999;MQ=59.66;MQ0=0;MQRankSum=-0.17;QD=13.04;ReadPosRankSum=-0.509;SNPEFF_AMINO_ACID_CHANGE=Q12*;SNPEFF_CODON_CHANGE=Caa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_115236057_115236068;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000353928    GT:AD:DP:GQ:PL    0/1:36,31:67:99:903,0,1114
1    115238016    rs72093075    CA    C    146.95    QDFilter2    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.111;DB;DP=95;FS=3.913;HRun=15;HaplotypeScore=762.654;IndelType=D;MQ=52.97;MQ0=0;MQRankSum=2.821;QD=1.55;ReadPosRankSum=2.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353928    GT:AD:DP:GQ:PL    0/1:52,23:95:99:186,0,609
1    115238031    .    AC    A    287.36    PASS    AB=0.94;AC=1;AF=0.50;AN=2;BaseQRankSum=3.99;DP=109;FS=58.179;HRun=1;HaplotypeScore=764.6334;IndelType=D;MQ=53.69;MQ0=0;MQRankSum=0.136;QD=2.64;ReadPosRankSum=-0.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353928    GT:AD:DP:GQ:PL    0/1:102,7:109:99:326,0,1188
1    115256669    rs969273    G    A    450.57    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.16;QD=12.18;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261443    GT:AD:DP:GQ:PL    0/1:22,15:37:99:481,0,789
1    115258830    .    C    G    37.30    QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DP=49;Dels=0.0;FS=3.01;HRun=2;HaplotypeScore=11.044;MQ=58.09;MQ0=0;MQRankSum=-0.548;QD=0.76;ReadPosRankSum=0.986;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261443    GT:AD:DP:GQ:PL    0/1:34,15:49:67.29:67,0,434
1    115398044    rs67869391    GC    G    995.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=7;HaplotypeScore=115.7506;IndelType=D;MQ=61.41;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369518    GT:AD:DP:GQ:PL    1/1:2,36:38:99:1038,102,0
1    115399940    rs360614    T    G    382.40    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.68;DB;DP=24;Dels=0.0;FS=1.81;HRun=1;HaplotypeScore=0.9665;MQ=53.95;MQ0=0;MQRankSum=-0.811;QD=15.93;ReadPosRankSum=0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369518    GT:AD:DP:GQ:PL    0/1:11,13:24:99:412,0,314
1    115401136    rs360615    G    A    1286.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=59.38;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369518    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1319,99,0
1    115420905    rs360636    T    C    117.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=10.7;ReadPosRankSum=1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477215    GT:AD:DP:GQ:PL    0/1:6,5:11:99:148,0,169
1    115488821    rs360674    C    T    176.07    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=11.74;ReadPosRankSum=-0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482717    GT:AD:DP:GQ:PL    0/1:7,8:15:99:206,0,242
1    115524216    rs12026343    C    T    376.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455987    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
1    115576023    rs10776792    A    G    2407.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5983;MQ=59.66;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=T14A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_115575983_115576145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSHB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256592    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2440,178,0
1    115576482    rs28566771    C    G    524.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256592    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:557,48,0
1    115601615    rs7523818    A    G    2240.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369514    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2274,169,0
1    115603340    rs6537853    C    G    87.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369514    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    115615358    rs753189    T    C    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.5;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369514    GT:AD:DP:GQ:PL    0/1:2,2:4:62.96:68,0,63
1    115631924    rs4240540    C    T    84.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369514    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:117,9,0
1    115829313    rs6330    G    A    367.64    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.592;QD=12.68;ReadPosRankSum=-0.066;SNPEFF_AMINO_ACID_CHANGE=A35V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_115828539_115829428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369512    GT:AD:DP:GQ:PL    0/1:16,13:29:99:398,0,513
1    116224792    rs10923175    C    T    37.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=9.32;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310260    GT:AD:DP:GQ:PL    0/1:1,3:4:33.98:67,0,34
1    116224925    rs10923176    G    A    408.71    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=3.407;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.872;QD=20.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310260    GT:AD:DP:GQ:PL    0/1:7,13:20:99:439,0,173
1    116224940    rs10754330    C    A    497.93    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=29;Dels=0.0;FS=8.741;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.757;QD=17.17;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310260    GT:AD:DP:GQ:PL    0/1:10,19:29:99:528,0,319
1    116225180    rs10923177    A    C    539.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.746;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.643;QD=19.97;ReadPosRankSum=-1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310260    GT:AD:DP:GQ:PL    0/1:9,18:27:99:569,0,262
1    116226459    rs12144356    C    T    110.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.919;QD=7.39;ReadPosRankSum=-0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310260    GT:AD:DP:GQ:PL    0/1:10,5:15:99:141,0,330
1    116228220    rs12145661    C    T    105.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=10.59;ReadPosRankSum=-1.668;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474344    GT:AD:DP:GQ:PL    0/1:5,5:10:99:136,0,156
1    116243868    rs28730711    A    G    249.14    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=28;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.035;QD=8.9;ReadPosRankSum=2.07;SNPEFF_AMINO_ACID_CHANGE=D327;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_116243653_116244047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456138    GT:AD:DP:GQ:PL    0/1:17,11:28:99:279,0,545
1    116283343    rs9428083    A    G    707.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261448    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:741,57,0
1    116283526    rs7538337    G    A    170.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261448    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
1    116311198    rs4074537    T    C    585.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_116310929_116311402;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261448    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:618,51,0
1    116534852    rs4046190    C    T    283    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_AMINO_ACID_CHANGE=S96;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_116534652_116534864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369502    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:316,24,0
1    116569530    rs2488429    G    C    6084.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=L205;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_116569514_116569643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369502    GT:AD:DP:GQ:PL    1/1:0,178:178:99:6084,445,0
1    116574306    rs6666101    G    A    283.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.591;QD=18.91;ReadPosRankSum=-1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369503    GT:AD:DP:GQ:PL    0/1:6,9:15:99:314,0,190
1    116577981    rs1935828    G    A    1930.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369502    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1963,141,0
1    116579779    rs17035177    C    T    120.21    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.977;QD=9.25;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369503    GT:AD:DP:GQ:PL    0/1:8,5:13:99:150,0,251
1    116607254    rs1281748    G    T    575.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369503    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:608,45,0
1    116609126    rs148525183    TC    T    137.80    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.572;DB;DP=27;FS=1.958;HRun=4;HaplotypeScore=119.9552;IndelType=D;MQ=59.14;MQ0=0;MQRankSum=-0.817;QD=5.1;ReadPosRankSum=0.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369503    GT:AD:DP:GQ:PL    0/1:19,8:27:99:177,0,675
1    116609185    rs3748742    G    A    593.54    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.055;DB;DP=38;Dels=0.0;FS=1.342;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-1.038;QD=15.62;ReadPosRankSum=-0.57;SNPEFF_AMINO_ACID_CHANGE=T470;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_116609141_116609329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369503    GT:AD:DP:GQ:PL    0/1:18,20:38:99:624,0,491
1    116609833    rs3748741    G    A    69.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.93;ReadPosRankSum=0.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369503    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,126
1    116666569    rs960675    T    A    77.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.86;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAB21L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369500    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,108
1    116670774    rs10754431    A    G    645.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.88;DB;DP=44;Dels=0.0;FS=6.673;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=14.67;ReadPosRankSum=-1.397;SNPEFF_AMINO_ACID_CHANGE=G223;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_116670766_116670960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAB21L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369500    GT:AD:DP:GQ:PL    0/1:22,22:44:99:676,0,710
1    116676035    rs10802159    A    C    351.31    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.815;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.25;MQ0=0;MQRankSum=-0.091;QD=18.49;ReadPosRankSum=-0.996;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAB21L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369500    GT:AD:DP:GQ:PL    0/1:7,11:19:99:381,0,226
1    116932563    rs850609    T    A    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.11;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369494    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:70,0,63
1    116952527    rs2269975    C    T    60.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=1.231;QD=12.13;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A1OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369491    GT:AD:DP:GQ:PL    0/1:2,3:5:65.40:91,0,65
1    117121865    rs12066192    G    A    257.50    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.468;QD=18.39;ReadPosRankSum=1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318837    GT:AD:DP:GQ:PL    0/1:6,8:14:99:287,0,190
1    117142531    rs631461    G    A    487.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318837    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:520,39,0
1    117146124    rs584423    T    C    203.12    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=55.14;MQ0=0;MQRankSum=-0.66;QD=15.62;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318837    GT:AD:DP:GQ:PL    0/1:6,7:13:99:233,0,212
1    117236970    rs614477    G    C    289.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf137;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369482    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
1    117297734    rs6701046    A    G    80.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369477    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
1    117297784    rs2236323    A    G    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369477    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
1    117447756    rs12144703    T    C    1018.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    1/1:0,32:32:84.24:1052,84,0
1    117487270    rs56209138    G    A    179.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:213,18,0
1    117487711    rs4546904    T    A    42.95    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=1.59;SNPEFF_AMINO_ACID_CHANGE=S136T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_117487369_117487714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544471    GT:AD:DP:GQ:PL    1/1:0,27:27:8.98:75,9,0
1    117487884    rs10923173    G    A    31.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=15.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:63,6,0
1    117491589    rs10801916    T    C    86.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    117509981    rs12410651    G    A    1189.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1222,90,0
1    117509987    rs12403233    C    T    1074.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    1/1:0,33:33:81.25:1108,81,0
1    117510061    rs12403245    C    T    264.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:297,24,0
1    117527628    rs17579863    T    C    567.72    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=0.223;DB;DP=31;Dels=0.0;FS=2.648;HRun=1;HaplotypeScore=0.0;MQ=55.37;MQ0=0;MQRankSum=3.386;QD=18.31;ReadPosRankSum=-1.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    0/1:12,19:31:99:598,0,223
1    117527645    rs36119404    GTCT    G    358.27    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.128;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=157.8896;IndelType=D;MQ=54.2;MQ0=0;MQRankSum=-1.435;QD=14.33;ReadPosRankSum=-0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393203    GT:AD:DP:GQ:PL    0/1:15,10:25:99:397,0,788
1    117529458    rs10801922    G    A    807.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.903;DB;DP=58;Dels=0.0;FS=2.389;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.327;QD=13.92;ReadPosRankSum=-0.998;SNPEFF_AMINO_ACID_CHANGE=V696I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_117529423_117532972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGFRN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544471    GT:AD:DP:GQ:PL    0/1:29,29:58:99:837,0,768
1    117555898    rs2764849    G    A    836.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256652    GT:AD:DP:GQ:PL    1/1:0,22:22:66.16:869,66,0
1    117559726    rs2249265    A    G    1510.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=M415V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_117559712_117560095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD101;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256652    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1543,120,0
1    117560036    rs17235766    G    A    881.31    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=3.267;DB;DP=61;Dels=0.0;FS=2.133;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-1.6;QD=14.45;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=R518Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_117559712_117560095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD101;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256652    GT:AD:DP:GQ:PL    0/1:31,30:61:99:911,0,856
1    117560059    .    T    C    698.69    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.813;DP=62;Dels=0.0;FS=2.177;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.462;QD=11.27;ReadPosRankSum=-1.054;SNPEFF_AMINO_ACID_CHANGE=W526R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_117559712_117560095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD101;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256652    GT:AD:DP:GQ:PL    0/1:32,30:62:99:729,0,905
1    117602960    rs2244501    C    A    1750.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.6;MQ0=0;QD=30.7;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464062    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1783,141,0
1    117603188    rs2244406    G    T    908.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369466    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:942,72,0
1    117617705    rs998532    A    G    3401.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_AMINO_ACID_CHANGE=K167E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_117617492_117618481;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369466    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3402,274,0
1    117618067    rs1289673    C    T    4359.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6841;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_AMINO_ACID_CHANGE=N287;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_117617492_117618481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369466    GT:AD:DP:GQ:PL    1/1:0,118:118:99:4360,322,0
1    117618722    rs1289672    T    C    1441.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470935    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1475,108,0
1    117622286    rs2801939    A    G    1029.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469638    GT:AD:DP:GQ:PL    1/1:0,29:29:81.23:1063,81,0
1    117631391    rs1555792    T    C    1809.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369466    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1843,135,0
1    117644058    rs41276572    A    G    2124.32    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.097;DB;DP=158;Dels=0.0;FS=9.535;HRun=0;HaplotypeScore=4.3387;MQ=59.27;MQ0=0;MQRankSum=-1.009;QD=13.45;ReadPosRankSum=0.304;SNPEFF_AMINO_ACID_CHANGE=K1134R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_117644002_117645492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369466    GT:AD:DP:GQ:PL    0/1:80,78:158:99:2154,0,2473
1    117658075    rs79788159    T    C    452.08    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.116;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.298;QD=14.58;ReadPosRankSum=1.052;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485032    GT:AD:DP:GQ:PL    0/1:17,14:31:99:482,0,565
1    117660608    rs1289655    C    T    1376.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.41;MQ0=0;QD=35.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485032    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1409,108,0
1    117663913    rs3795655    C    T    732.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369461    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:766,57,0
1    117664046    rs6657335    C    T    73.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_117663336_117664350;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256649    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
1    117690272    rs10754339    G    A    1761.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=59.56;MQ0=0;QD=33.87;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328189    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1794,132,0
1    117715026    rs6657810    C    T    1742.73    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.851;DB;DP=140;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.7887;MQ=59.84;MQ0=0;MQRankSum=1.562;QD=12.45;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328189    GT:AD:DP:GQ:PL    0/1:76,63:140:99:1773,0,2349
1    117910682    rs1146297    G    A    604.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482811    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:638,48,0
1    117945220    rs3767795    T    C    72.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.03;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329466    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:102,0,29
1    117957288    rs1289948    A    G    1530.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.03;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329466    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1564,117,0
1    117984776    rs2306444    A    T    181.05    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=16.46;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329466    GT:AD:DP:GQ:PL    0/1:5,6:11:99:211,0,155
1    118039722    rs7553018    C    T    112.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.0;QD=18.7;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329466    GT:AD:DP:GQ:PL    0/1:2,4:6:62.59:142,0,63
1    118065284    rs34350477    C    G    183.11    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=22.89;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329466    GT:AD:DP:GQ:PL    0/1:2,6:8:58.16:213,0,58
1    118065654    rs41312694    G    A    430.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.345;QD=15.38;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329466    GT:AD:DP:GQ:PL    0/1:14,14:28:99:461,0,495
1    118165691    rs1630312    C    T    1613.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_AMINO_ACID_CHANGE=H67;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_118165464_118170994;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM46C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369448    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1647,120,0
1    118320644    rs1780028    A    G    199.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.54;MQ0=0;QD=22.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL390877.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423940    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:233,21,0
1    118320792    rs144617386    G    A    162.74    MQFilter40    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=27;Dels=0.0;FS=8.141;HRun=0;HaplotypeScore=0.8321;MQ=27.06;MQ0=5;MQRankSum=-1.247;QD=6.03;ReadPosRankSum=0.643;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL390877.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504345    GT:AD:DP:GQ:PL    0/1:16,11:27:99:193,0,264
1    118320859    rs1775749    T    A    434.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.71;MQ0=4;QD=20.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL390877.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504345    GT:AD:DP:GQ:PL    1/1:0,21:21:39.12:468,39,0
1    118321119    rs114485606    T    C    1137.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.21;MQ0=1;QD=27.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL390877.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504345    GT:AD:DP:GQ:PL    1/1:0,41:41:90.28:1171,90,0
1    118482149    rs34973445    C    T    762.92    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.01;DB;DP=66;Dels=0.0;FS=3.54;HRun=0;HaplotypeScore=1.8665;MQ=59.3;MQ0=0;MQRankSum=-1.008;QD=11.56;ReadPosRankSum=1.661;SNPEFF_AMINO_ACID_CHANGE=A210V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_118482100_118482195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349139    GT:AD:DP:GQ:PL    0/1:38,27:66:99:793,0,1124
1    118484265    rs10733098    G    A    316.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471680    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:349,27,0
1    118492587    rs41276602    T    G    1353.15    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=4.03;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9692;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=11.77;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    0/1:66,49:115:99:1383,0,2222
1    118501941    .    T    G    116.21    FSFilter60;QDFilter2    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.988;DP=65;Dels=0.0;FS=71.102;HRun=2;HaplotypeScore=2.9647;MQ=49.11;MQ0=0;MQRankSum=-3.298;QD=1.79;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=G901;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_118501915_118503049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349139    GT:AD:DP:GQ:PL    0/1:37,28:65:99:146,0,1249
1    118526592    rs4347199    G    A    357.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:391,30,0
1    118554711    rs6428725    G    T    204.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
1    118565953    rs10923472    G    A    1680.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.0;SNPEFF_AMINO_ACID_CHANGE=P1348L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_118565927_118566086;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1713,126,0
1    118583408    rs10923477    G    A    1948.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_AMINO_ACID_CHANGE=Y1037;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_118583353_118583464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1982,144,0
1    118598288    rs149310440    GATTAA    G    469.59    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=3.831;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=150.6031;IndelType=D;MQ=57.96;MQ0=0;MQRankSum=-1.078;QD=16.19;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    0/1:19,10:29:99:509,0,1667
1    118617274    rs1935993    C    T    881.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.22;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.79;MQ=59.33;MQ0=0;MQRankSum=0.835;QD=31.49;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    1/1:1,27:28:33.46:915,33,0
1    118623681    rs71584521    TACACAC    T    1127.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=211.1167;IndelType=D;MQ=42.35;MQ0=0;QD=37.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463628    GT:AD:DP:GQ:PL    1/1:7,22:30:60.20:1169,60,0
1    118629125    rs2798150    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    118629811    .    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    0/1:2,2:4:58.26:69,0,58
1    118644430    rs10754367    A    G    2591.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=N189;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_118644363_118644549;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2625,205,0
1    118644524    rs17185492    T    A    2611.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=E158V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_118644363_118644549;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336338    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2645,202,0
1    118693016    rs76419145    T    G    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPAG17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465053    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
1    119466275    rs4659129    A    G    440.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207157    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:473,36,0
1    119466374    rs1766793    G    T    124.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207157    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    119467127    rs1779437    C    T    553.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207157    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:586,45,0
1    119683063    rs3934789    G    A    73.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.73;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235521    GT:AD:DP:GQ:PL    0/1:2,3:5:28.61:104,0,29
1    119923099    rs143116491    T    C    156.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=19.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325945    GT:AD:DP:GQ:PL    0/1:2,6:8:52.24:186,0,52
1    119923531    rs2224995    A    C    528.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325945    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:562,42,0
1    119923724    rs2275607    T    C    3310.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.374;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.272;QD=31.83;ReadPosRankSum=0.272;SNPEFF_AMINO_ACID_CHANGE=L19;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_119923701_119923839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361035    GT:AD:DP:GQ:PL    1/1:1,103:104:99:3310,214,0
1    119925403    rs1341007    C    T    127.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325945    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
1    119925464    rs2298027    G    A    524.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325945    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:557,42,0
1    119927680    rs6667679    A    G    653.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325945    GT:AD:DP:GQ:PL    1/1:0,20:20:54.15:686,54,0
1    119936263    rs3765949    G    A    932.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=35.87;ReadPosRankSum=-1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325945    GT:AD:DP:GQ:PL    1/1:1,25:26:40.45:966,40,0
1    120057158    rs6203    C    T    1742.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=L338;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120056457_120057677;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD3B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369413    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1775,135,0
1    120057246    rs1047303    C    A    951.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=30.71;SNPEFF_AMINO_ACID_CHANGE=T367N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120056457_120057677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD3B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369413    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:985,75,0
1    120165135    rs3795662    G    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF697;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421812    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    120165187    rs3795663    G    A    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF697;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421812    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
1    120165826    rs12076924    C    T    953.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=P380;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120162045_120166739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF697;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421812    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:987,75,0
1    120166681    rs12067843    G    A    1785.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=S95;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120162045_120166739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF697;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421812    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1819,132,0
1    120254506    rs561931    A    G    392.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PHGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493622    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:425,33,0
1    120254545    rs562038    G    C    799.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PHGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462324    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:833,63,0
1    120263643    rs550174    T    C    140.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=14.09;ReadPosRankSum=0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PHGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369409    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,136
1    120263657    rs894079    A    G    207.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.935;QD=14.83;ReadPosRankSum=-0.312;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_120262250_120263944;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PHGDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369407    GT:AD:DP:GQ:PL    0/1:6,8:14:99:238,0,193
1    120269567    rs2236398    G    C    434.91    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=37;Dels=0.0;FS=1.32;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.321;QD=11.75;ReadPosRankSum=1.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PHGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369407    GT:AD:DP:GQ:PL    0/1:21,16:37:99:465,0,560
1    120285546    rs543703    G    A    468.88    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.567;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.475;QD=13.02;ReadPosRankSum=-0.254;SNPEFF_AMINO_ACID_CHANGE=T315;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120285430_120285667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PHGDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537497    GT:AD:DP:GQ:PL    0/1:19,17:36:99:499,0,535
1    120286457    rs2236399    G    T    1184.65    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=4.903;DB;DP=92;Dels=0.0;FS=3.103;HRun=0;HaplotypeScore=1.4972;MQ=59.55;MQ0=0;MQRankSum=-0.24;QD=12.88;ReadPosRankSum=1.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369406    GT:AD:DP:GQ:PL    0/1:52,40:92:99:1215,0,1543
1    120293367    rs667246    T    C    135.21    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=10.4;ReadPosRankSum=-0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472375    GT:AD:DP:GQ:PL    0/1:8,5:13:99:165,0,262
1    120336785    rs1052972    C    T    1352.25    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.378;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3839;MQ=59.17;MQ0=0;MQRankSum=-0.883;QD=16.1;ReadPosRankSum=-0.703;SNPEFF_AMINO_ACID_CHANGE=W114*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_120336751_120336822;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000369402    GT:AD:DP:GQ:PL    0/1:37,47:84:99:1382,0,1182
1    120336876    rs699778    T    G    596.16    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.162;DB;DP=45;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=58.97;MQ0=0;MQRankSum=1.01;QD=13.25;ReadPosRankSum=0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530654    GT:AD:DP:GQ:PL    0/1:24,21:45:99:626,0,720
1    120337384    rs947270    T    C    623.83    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.784;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.98;MQ0=0;MQRankSum=-2.314;QD=15.22;ReadPosRankSum=1.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256585    GT:AD:DP:GQ:PL    0/1:19,22:41:99:654,0,674
1    120337403    rs947271    A    G    457.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.44;MQ0=0;MQRankSum=-0.708;QD=16.96;ReadPosRankSum=-1.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256585    GT:AD:DP:GQ:PL    0/1:12,15:27:99:488,0,408
1    120340918    rs1163541    G    A    147.36    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.37;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369401    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,138
1    120342167    rs2793836    T    C    38.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369401    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:69,0,33
1    120342215    rs1992377    T    C    71.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.99;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369401    GT:AD:DP:GQ:PL    0/1:3,3:6:94.30:102,0,94
1    120378678    rs3009182    C    T    548.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=50;Dels=0.0;FS=8.309;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.168;QD=10.97;ReadPosRankSum=0.921;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401014    GT:AD:DP:GQ:PL    0/1:30,20:50:99:578,0,1031
1    120379740    .    A    AT    162.54    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=30.3838;IndelType=I;MQ=56.43;MQ0=0;QD=32.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401014    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
1    120380008    rs3009184    T    A    556.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8773;MQ=58.44;MQ0=0;MQRankSum=0.503;QD=13.25;ReadPosRankSum=-0.402;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401014    GT:AD:DP:GQ:PL    0/1:21,21:42:99:587,0,658
1    120382121    rs2226084    C    T    497.68    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.135;DB;DP=33;Dels=0.0;FS=6.435;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.991;QD=15.08;ReadPosRankSum=-0.378;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401014    GT:AD:DP:GQ:PL    0/1:17,16:33:99:528,0,599
1    120384205    rs2994820    A    G    2371.87    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.018;DB;DP=173;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6918;MQ=59.73;MQ0=0;MQRankSum=-0.521;QD=13.71;ReadPosRankSum=-0.398;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401014    GT:AD:DP:GQ:PL    0/1:82,90:173:99:2402,0,2481
1    120387376    rs2153676    A    G    82.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.52;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401014    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:112,0,28
1    120390071    rs3009191    T    C    1148.75    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.216;DB;DP=99;Dels=0.0;FS=5.452;HRun=1;HaplotypeScore=0.8321;MQ=45.89;MQ0=11;MQRankSum=-7.297;QD=11.6;ReadPosRankSum=0.196;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401014    GT:AD:DP:GQ:PL    0/1:46,53:99:99:1179,0,1458
1    120436751    rs35273427    T    C    2450.81    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.045;DB;DP=190;DS;Dels=0.0;FS=13.0;HRun=0;HaplotypeScore=3.4938;MQ=59.66;MQ0=0;MQRankSum=0.804;QD=12.9;ReadPosRankSum=0.885;SNPEFF_AMINO_ACID_CHANGE=T737A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120436156_120439118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369400    GT:AD:DP:GQ:PL    0/1:101,88:190:99:2481,0,3240
1    120437718    rs2793823    G    A    1453.16    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.233;DB;DP=100;Dels=0.0;FS=2.642;HRun=1;HaplotypeScore=2.4805;MQ=59.08;MQ0=0;MQRankSum=0.274;QD=14.39;ReadPosRankSum=-0.309;SNPEFF_AMINO_ACID_CHANGE=D414;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120436156_120439118;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369400    GT:AD:DP:GQ:PL    0/1:48,51:100:99:1483,0,1445
1    120437884    rs2641348    A    G    1038.85    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=100;Dels=0.0;FS=0.795;HRun=1;HaplotypeScore=1.865;MQ=59.58;MQ0=0;MQRankSum=0.601;QD=10.39;ReadPosRankSum=-0.702;SNPEFF_AMINO_ACID_CHANGE=L359P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120436156_120439118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369400    GT:AD:DP:GQ:PL    0/1:61,39:100:99:1069,0,2042
1    120458004    rs6685892    A    T    508.38    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.314;QD=9.97;ReadPosRankSum=0.206;SNPEFF_AMINO_ACID_CHANGE=G2447;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120454176_120459317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:28,22:51:99:538,0,833
1    120461253    rs2793829    C    T    144.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.02;ReadPosRankSum=1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493703    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,137
1    120464165    rs835573    C    T    74.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.65;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493703    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,107
1    120466108    rs2793830    G    A    62.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.36;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:3,3:6:91.90:92,0,92
1    120471424    rs2493393    C    T    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    120471857    rs2493392    C    T    170.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.614;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=12.16;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:8,6:14:99:200,0,282
1    120477998    rs2453056    C    A    1508.08    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.722;DB;DP=112;Dels=0.0;FS=3.211;HRun=0;HaplotypeScore=0.8941;MQ=59.79;MQ0=0;MQRankSum=0.315;QD=13.47;ReadPosRankSum=-0.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:61,51:112:99:1538,0,1947
1    120478285    rs5025718    T    C    261.51    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.33;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.088;QD=11.89;ReadPosRankSum=-1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:12,10:22:99:292,0,386
1    120480394    rs2453057    T    C    828.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:862,69,0
1    120480709    rs2453058    C    T    144.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=11.14;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:6,6:13:99:175,0,213
1    120484421    rs2493420    G    A    208.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=14.87;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:7,7:14:99:238,0,251
1    120496119    rs7534585    A    T    695.35    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.254;DB;DP=43;Dels=0.0;FS=2.304;HRun=0;HaplotypeScore=0.9998;MQ=59.46;MQ0=0;MQRankSum=0.642;QD=16.17;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:20,23:43:99:725,0,674
1    120496127    rs7534586    A    C    723.11    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=3.158;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=59.53;MQ0=0;MQRankSum=-0.991;QD=14.76;ReadPosRankSum=0.949;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:23,26:49:99:753,0,752
1    120506108    rs2934381    G    A    689.75    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.21;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6648;MQ=59.63;MQ0=0;MQRankSum=-1.544;QD=11.13;ReadPosRankSum=-1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:33,28:62:99:720,0,1090
1    120512104    rs2493409    T    C    384.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:418,33,0
1    120529750    rs2453040    A    C    425.68    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.34;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=11.82;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401649    GT:AD:DP:GQ:PL    0/1:17,19:36:99:456,0,569
1    120539331    rs2124109    C    T    363.10    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=0.151;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7381;MQ=53.11;MQ0=1;MQRankSum=-3.143;QD=4.54;ReadPosRankSum=-2.421;SNPEFF_AMINO_ACID_CHANGE=R223;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120535405_120539354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369342    GT:AD:DP:GQ:PL    0/1:60,19:80:99:393,0,1864
1    120611960    rs139076095    C    T    167.75    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=19;Dels=0.0;FS=8.82;HRun=0;HaplotypeScore=0.9996;MQ=42.64;MQ0=1;MQRankSum=-2.443;QD=8.83;ReadPosRankSum=-0.311;SNPEFF_AMINO_ACID_CHANGE=A21T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120611948_120612240;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:8,11:19:99:198,0,269
1    120612002    .    CGG    C    212.70    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DP=19;FS=18.921;HRun=4;HaplotypeScore=146.3627;IndelType=D;MQ=45.03;MQ0=1;MQRankSum=-2.174;QD=10.13;ReadPosRankSum=0.362;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_120611948_120612240;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:13,8:19:99:252,0,303
1    120612006    rs77243975    G    A    231.71    HaplotypeScoreFilter13    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=21;Dels=0.0;FS=8.193;HRun=0;HaplotypeScore=17.7814;MQ=45.03;MQ0=1;MQRankSum=1.61;QD=11.03;ReadPosRankSum=0.619;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000538680    GT:AD:DP:GQ:PL    0/1:13,8:21:89.22:262,0,89
1    120612034    .    T    G    31.19    QDFilter2    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DP=19;Dels=0.0;FS=5.528;HRun=0;HaplotypeScore=2.995;MQ=46.23;MQ0=0;MQRankSum=-2.95;QD=1.64;ReadPosRankSum=-2.201;SNPEFF_AMINO_ACID_CHANGE=G14;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_120612010_120612075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538680    GT:AD:DP:GQ:PL    0/1:12,7:19:61.18:61,0,373
1    120612154    rs56375229    C    G    156.74    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=32;Dels=0.0;FS=3.891;HRun=1;HaplotypeScore=0.8941;MQ=45.73;MQ0=4;MQRankSum=-1.645;QD=4.9;ReadPosRankSum=-0.637;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538680    GT:AD:DP:GQ:PL    0/1:23,9:32:99:187,0,667
1    120612163    rs55899574    C    A    195.67    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=34;Dels=0.0;FS=3.568;HRun=0;HaplotypeScore=5.8483;MQ=46.86;MQ0=4;MQRankSum=-1.403;QD=5.76;ReadPosRankSum=-1.448;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538680    GT:AD:DP:GQ:PL    0/1:23,11:34:99:226,0,663
1    120612265    .    A    G    61.64    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DP=18;Dels=0.0;FS=5.842;HRun=0;HaplotypeScore=2.8633;MQ=43.22;MQ0=0;MQRankSum=-1.634;QD=3.42;ReadPosRankSum=-0.264;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:13,5:18:91.63:92,0,306
1    120612297    rs138452656    C    A    172.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=18;Dels=0.0;FS=6.41;HRun=0;HaplotypeScore=0.0;MQ=41.59;MQ0=1;MQRankSum=0.884;QD=9.57;ReadPosRankSum=-0.295;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256646    GT:AD:DP:GQ:PL    0/1:9,9:18:99:202,0,163
1    120904791    rs2791063    A    G    733.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.575;DB;DP=56;Dels=0.0;FS=5.885;HRun=0;HaplotypeScore=3.799;MQ=48.85;MQ0=0;MQRankSum=-1.301;QD=13.1;ReadPosRankSum=-0.278;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-439A17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401004    GT:AD:DP:GQ:PL    0/1:24,32:56:99:763,0,690
1    120905164    rs149926271    G    C    319.08    PASS    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.293;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.98;MQ0=0;MQRankSum=-0.764;QD=21.27;ReadPosRankSum=1.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-439A17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401004    GT:AD:DP:GQ:PL    0/1:2,13:15:38.55:349,0,39
1    120927081    rs76856338    C    T    360.60    MQFilter40    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.15;DB;DP=37;Dels=0.0;FS=11.784;HRun=0;HaplotypeScore=0.0;MQ=33.28;MQ0=2;MQRankSum=2.883;QD=9.75;ReadPosRankSum=-0.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369383    GT:AD:DP:GQ:PL    0/1:21,16:37:99:391,0,436
1    120934353    .    C    T    551.45    MQFilter40    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=2.957;DP=77;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.0;MQ=23.04;MQ0=41;MQRankSum=2.607;QD=7.16;ReadPosRankSum=-1.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369383    GT:AD:DP:GQ:PL    0/1:43,33:77:99:581,0,274
1    121115761    rs150166046    T    G    40.73    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=18;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.0;MQ=29.41;MQ0=2;MQRankSum=0.546;QD=2.26;ReadPosRankSum=-1.395;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:14,4:18:70.72:71,0,282
1    121115786    .    C    A    122.82    MQFilter40    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DP=26;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=0.5784;MQ=30.98;MQ0=2;MQRankSum=0.318;QD=4.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:18,8:26:99:153,0,395
1    121116121    .    T    C    158.24    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.678;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=27.08;MQ0=0;MQRankSum=-1.628;QD=9.89;ReadPosRankSum=-1.523;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:8,8:16:99:188,0,188
1    121116647    rs2772072    T    A    3612.44    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.577;DB;DP=234;Dels=0.0;FS=4.678;HRun=9;HaplotypeScore=8.229;MQ=46.9;MQ0=4;MQRankSum=-8.378;QD=15.44;ReadPosRankSum=0.942;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:91,143:234:99:3612,0,2641
1    121116678    rs61806689    C    T    814.67    HaplotypeScoreFilter13    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.833;DB;DP=250;DS;Dels=0.0;FS=12.023;HRun=3;HaplotypeScore=51.9158;MQ=46.4;MQ0=3;MQRankSum=5.879;QD=3.26;ReadPosRankSum=-1.053;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:202,48:250:99:845,0,6065
1    121116688    rs61806690    A    G    3891.93    HaplotypeScoreFilter13    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.695;DB;DP=240;DS;Dels=0.0;FS=0.508;HRun=0;HaplotypeScore=44.9313;MQ=45.94;MQ0=3;MQRankSum=-3.213;QD=16.22;ReadPosRankSum=0.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:94,146:240:99:3892,0,2407
1    121116733    rs61806691    A    G    1690.46    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.111;DB;DP=191;DS;Dels=0.0;FS=52.108;HRun=1;HaplotypeScore=1.5757;MQ=46.18;MQ0=4;MQRankSum=-8.787;QD=8.85;ReadPosRankSum=0.533;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:112,79:191:99:1720,0,3546
1    121116846    .    C    A    89.82    QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.73;DP=113;Dels=0.0;FS=9.329;HRun=0;HaplotypeScore=0.6651;MQ=50.78;MQ0=7;MQRankSum=-5.596;QD=0.79;ReadPosRankSum=-0.419;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:92,21:113:99:120,0,2879
1    121116933    rs79097880    T    C    227.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.06;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.31;MQ0=0;MQRankSum=0.954;QD=9.47;ReadPosRankSum=0.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:15,9:24:99:257,0,502
1    121116953    rs78187610    A    G    70.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.46;MQ0=0;MQRankSum=0.421;QD=3.93;ReadPosRankSum=-0.983;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:12,6:18:99:101,0,435
1    121124362    rs2790303    C    G    325.53    MQFilter40    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=-2.055;QD=19.15;ReadPosRankSum=0.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:5,12:17:99:356,0,152
1    121124501    .    C    A    42.62    MQFilter40;QDFilter2    AB=0.889;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.431;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5983;MQ=17.14;MQ0=70;MQRankSum=-0.469;QD=0.29;ReadPosRankSum=-0.707;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:128,16:146:72.62:73,0,1301
1    121124514    .    G    A    61.15    MQFilter40;QDFilter2    AB=0.887;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.173;DP=161;Dels=0.0;FS=1.437;HRun=2;HaplotypeScore=2.8843;MQ=16.61;MQ0=81;MQRankSum=-0.979;QD=0.38;ReadPosRankSum=0.428;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL358175.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437515    GT:AD:DP:GQ:PL    0/1:141,18:161:91.14:91,0,1308
1    142697637    rs77740050    C    T    196.83    MQFilter40    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.378;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.18;MQ0=6;MQRankSum=-4.987;QD=2.62;ReadPosRankSum=-3.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL583842.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418064    GT:AD:DP:GQ:PL    0/1:44,31:75:99:227,0,1174
1    142699953    .    T    TA    225.02    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=3.269;DP=17;FS=0.0;HRun=1;HaplotypeScore=141.159;IndelType=I;MQ=35.96;MQ0=1;MQRankSum=0.439;QD=12.5;ReadPosRankSum=1.708;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:11,7:17:99:264,0,268
1    142699980    .    G    C    215.69    MQFilter40    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=2.742;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.49;MQ0=37;MQRankSum=-1.299;QD=3.99;ReadPosRankSum=-0.914;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:45,8:54:99:246,0,177
1    142700018    .    C    T    155.86    MQFilter40;QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.01;MQ0=103;MQRankSum=0.485;QD=1.26;ReadPosRankSum=0.037;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:108,16:124:99:186,0,288
1    142713546    .    C    G    137.26    MQFilter40;QDFilter2    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.173;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.29;MQ0=59;MQRankSum=-0.741;QD=1.25;ReadPosRankSum=-1.614;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:72,38:110:99:167,0,703
1    142727090    rs112164832    G    A    374.06    FSFilter60;MQFilter40;QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.215;DB;DP=246;DS;Dels=0.0;FS=63.213;HRun=3;HaplotypeScore=2.6425;MQ=20.84;MQ0=102;MQRankSum=-2.364;QD=1.52;ReadPosRankSum=-0.007;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:175,70:246:99:404,0,2091
1    142727161    rs10453897    C    T    1119.34    MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=8.15;DB;DP=185;DS;Dels=0.0;FS=1.577;HRun=1;HaplotypeScore=0.5784;MQ=27.19;MQ0=77;MQRankSum=1.057;QD=6.05;ReadPosRankSum=1.284;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:107,78:185:99:1149,0,1474
1    142727163    rs79437463    A    G    1121.19    MQFilter40    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DB;DP=179;DS;Dels=0.0;FS=1.57;HRun=1;HaplotypeScore=0.5784;MQ=27.97;MQ0=72;MQRankSum=0.855;QD=6.26;ReadPosRankSum=1.852;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:117,61:179:99:1151,0,1579
1    142727204    rs10453899    A    G    1352.70    MQFilter40    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=5.333;DB;DP=83;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=1.7803;MQ=39.94;MQ0=2;MQRankSum=-0.737;QD=16.3;ReadPosRankSum=-0.862;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:38,44:83:99:1383,0,1171
1    142727234    rs4300239    A    C    551.19    MQFilter40    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=38.67;MQ0=0;MQRankSum=-0.57;QD=14.9;ReadPosRankSum=1.109;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL583842.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411746    GT:AD:DP:GQ:PL    0/1:18,19:37:99:581,0,546
1    142827024    .    AAG    A    261.67    QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DP=41;DS;FS=3.424;HRun=0;HaplotypeScore=279.934;IndelType=D;MQ=9.81;MQ0=140;MQRankSum=2.108;QD=1.05;ReadPosRankSum=-0.703;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-423O2.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457776    GT:AD:DP:GQ:PL    0/1:188,61:41:99:301,0,1543
1    142827042    .    T    G    208.39    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.957;DP=250;DS;Dels=0.0;FS=2.634;HRun=0;HaplotypeScore=14.6128;MQ=13.28;MQ0=107;MQRankSum=1.312;QD=0.83;ReadPosRankSum=2.411;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-423O2.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457776    GT:AD:DP:GQ:PL    0/1:198,52:250:99:238,0,1387
1    142827044    .    G    A    1184.72    HaplotypeScoreFilter13;MQFilter40    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=2.366;DP=250;DS;Dels=0.0;FS=8.055;HRun=1;HaplotypeScore=13.6262;MQ=13.73;MQ0=104;MQRankSum=0.019;QD=4.74;ReadPosRankSum=-2.859;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-423O2.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457776    GT:AD:DP:GQ:PL    0/1:104,146:250:99:1215,0,429
1    142840924    rs138856401    A    G    101.24    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.54;MQ0=30;MQRankSum=1.495;QD=2.74;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,35:37:12.03:134,12,0
1    143187238    .    C    T    285.72    MQFilter40    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=36.64;MQ0=1;MQRankSum=-2.086;QD=10.58;ReadPosRankSum=-1.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX571672.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412204    GT:AD:DP:GQ:PL    0/1:11,15:27:99:316,0,310
1    143187387    rs76845781    C    G    69.80    QDFilter2    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.743;DB;DP=47;Dels=0.0;FS=15.418;HRun=1;HaplotypeScore=0.0;MQ=40.31;MQ0=3;MQRankSum=-5.458;QD=1.49;ReadPosRankSum=-0.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX571672.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412204    GT:AD:DP:GQ:PL    0/1:25,22:47:99:100,0,771
1    143187438    rs61788681    T    G    422.80    MQFilter40    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.046;DB;DP=46;Dels=0.0;FS=21.13;HRun=1;HaplotypeScore=7.3634;MQ=38.57;MQ0=3;MQRankSum=-4.961;QD=9.19;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX571672.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412204    GT:AD:DP:GQ:PL    0/1:18,28:46:99:453,0,588
1    143208009    rs61785378    G    T    39.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.48;MQ0=2;MQRankSum=0.736;QD=7.91;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX571672.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436680    GT:AD:DP:GQ:PL    0/1:3,2:5:32.73:70,0,33
1    143209415    rs139708986    T    G    501.68    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.879;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9748;MQ=23.84;MQ0=37;MQRankSum=0.076;QD=4.36;ReadPosRankSum=-0.586;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX571672.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436680    GT:AD:DP:GQ:PL    0/1:69,46:115:99:532,0,600
1    143209814    rs113670169    C    T    91.55    MQFilter40;QDFilter2    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=3.025;DB;DP=169;DS;Dels=0.0;FS=7.118;HRun=0;HaplotypeScore=0.7887;MQ=24.63;MQ0=89;MQRankSum=-2.356;QD=0.54;ReadPosRankSum=1.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX571672.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436680    GT:AD:DP:GQ:PL    0/1:142,27:169:99:122,0,1793
1    143378854    .    G    A    848.57    MQFilter40    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=1.49;DP=155;Dels=0.0;FS=0.744;HRun=2;HaplotypeScore=4.1911;MQ=23.07;MQ0=28;MQRankSum=-0.654;QD=5.47;ReadPosRankSum=1.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX004987.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411775    GT:AD:DP:GQ:PL    0/1:96,58:155:99:879,0,1535
1    143394063    rs150552459    A    T    46.72    MQFilter40;QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=2.845;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=17.21;MQ0=12;MQRankSum=0.281;QD=0.54;ReadPosRankSum=0.463;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX004987.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412492    GT:AD:DP:GQ:PL    0/1:77,9:86:76.71:77,0,239
1    143394152    .    C    A    123.11    MQFilter40;QDFilter2    AB=0.932;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DP=162;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.8321;MQ=10.35;MQ0=107;MQRankSum=2.872;QD=0.76;ReadPosRankSum=-0.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX004987.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412492    GT:AD:DP:GQ:PL    0/1:151,11:162:99:153,0,325
1    143400907    rs61799773    A    G    344.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=18.95;MQ0=3;QD=11.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX004987.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428624    GT:AD:DP:GQ:PL    1/1:0,31:31:35.99:378,36,0
1    143663789    .    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440199    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
1    143664074    rs148282614    C    G    45.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.85;MQ0=1;QD=5.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445753    GT:AD:DP:GQ:PL    1/1:0,8:8:6.02:77,6,0
1    143664091    rs115201108    C    G    37.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.85;MQ0=1;QD=4.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445753    GT:AD:DP:GQ:PL    1/1:0,8:8:6.02:69,6,0
1    143664107    rs145804921    G    A    30.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.85;MQ0=1;QD=3.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445753    GT:AD:DP:GQ:PL    1/1:1,7:8:6.01:62,6,0
1    143664165    rs140216616    C    G    81.11    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.94;MQ0=5;QD=6.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445753    GT:AD:DP:GQ:PL    1/1:5,8:13:9.03:113,9,0
1    143664168    rs138587150    G    A    75.48    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.2;MQ0=5;QD=5.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445753    GT:AD:DP:GQ:PL    1/1:5,9:14:9.03:108,9,0
1    143664173    rs143804077    T    C    78.83    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.17;MQ0=5;QD=6.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445753    GT:AD:DP:GQ:PL    1/1:5,8:13:9.03:111,9,0
1    143664183    rs150890212    G    T    78.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.67;MQ0=5;QD=6.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445753    GT:AD:DP:GQ:PL    1/1:5,7:12:9.03:110,9,0
1    143664198    .    T    C    68.92    MQFilter40    AC=2;AF=1.00;AN=2;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=23.24;MQ0=5;QD=6.27;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000445753    GT:AD:DP:GQ:PL    1/1:5,6:11:9.02:101,9,0
1    143744078    rs7512075    C    T    70.07    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.55;MQ0=0;MQRankSum=-0.597;QD=5.84;ReadPosRankSum=-1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429388    GT:AD:DP:GQ:PL    0/1:5,7:12:98.05:100,0,98
1    143744160    rs61823125    G    A    1378.90    MQFilter40    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=4.035;DB;DP=94;Dels=0.0;FS=2.39;HRun=2;HaplotypeScore=0.734;MQ=35.9;MQ0=1;MQRankSum=-0.205;QD=14.67;ReadPosRankSum=-0.329;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429388    GT:AD:DP:GQ:PL    0/1:42,52:94:99:1409,0,1114
1    143744411    rs140521978    G    C    57.83    MQFilter40;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.415;DB;DP=30;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=1.865;MQ=22.67;MQ0=15;MQRankSum=0.065;QD=1.93;ReadPosRankSum=-0.326;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429388    GT:AD:DP:GQ:PL    0/1:20,10:30:87.83:88,0,273
1    143744508    rs71661953    G    T    174.02    MQFilter40    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.89;MQ0=1;MQRankSum=-2.524;QD=12.43;ReadPosRankSum=-0.437;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429388    GT:AD:DP:GQ:PL    0/1:5,9:14:99:204,0,128
1    143744513    rs71661954    C    T    130.94    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.365;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.6;MQ0=1;MQRankSum=-1.468;QD=8.73;ReadPosRankSum=0.471;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX284650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429388    GT:AD:DP:GQ:PL    0/1:6,9:15:99:161,0,130
1    143767235    .    G    A    124.10    MQFilter40;QDFilter2    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=16.98;MQ0=42;MQRankSum=-0.746;QD=1.77;ReadPosRankSum=-0.386;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:53,17:70:99:154,0,406
1    143767254    .    A    G    67    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7772;MQ=15.32;MQ0=72;MQRankSum=-0.903;QD=0.64;ReadPosRankSum=0.777;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:84,21:105:96.99:97,0,644
1    143767312    .    G    T    320.87    MQFilter40;QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DP=222;Dels=0.0;FS=7.778;HRun=0;HaplotypeScore=2.9508;MQ=14.34;MQ0=158;MQRankSum=-0.367;QD=1.45;ReadPosRankSum=-0.487;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:176,45:222:99:351,0,1055
1    143767513    rs6604511    A    T    1429.61    MQFilter40    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.029;DB;DP=244;DS;Dels=0.0;FS=0.709;HRun=0;HaplotypeScore=2.8896;MQ=28.33;MQ0=29;MQRankSum=0.353;QD=5.86;ReadPosRankSum=0.413;SNPEFF_AMINO_ACID_CHANGE=F112L;SNPEFF_CODON_CHANGE=ttT/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_143767144_143767881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:143,101:244:99:1460,0,2689
1    143767522    rs6604512    A    G    1507.38    MQFilter40    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=2.03;DB;DP=247;DS;Dels=0.0;FS=3.902;HRun=0;HaplotypeScore=0.734;MQ=26.5;MQ0=33;MQRankSum=-0.146;QD=6.1;ReadPosRankSum=-0.245;SNPEFF_AMINO_ACID_CHANGE=G109;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_143767144_143767881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:148,99:247:99:1537,0,2422
1    143767547    rs2490183    G    A    1047.71    MQFilter40    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.163;DB;DP=248;DS;Dels=0.0;FS=5.745;HRun=0;HaplotypeScore=5.3984;MQ=23.42;MQ0=44;MQRankSum=-0.393;QD=4.22;ReadPosRankSum=-0.636;SNPEFF_AMINO_ACID_CHANGE=A101V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_143767144_143767881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:160,88:248:99:1078,0,2291
1    143767628    rs6604514    C    T    279.12    FSFilter60;MQFilter40;QDFilter2    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.948;DB;DP=250;DS;Dels=0.0;FS=63.62;HRun=0;HaplotypeScore=4.2609;MQ=30.47;MQ0=23;MQRankSum=-5.437;QD=1.12;ReadPosRankSum=1.645;SNPEFF_AMINO_ACID_CHANGE=G74D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_143767144_143767881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:186,63:250:99:309,0,4400
1    143767643    rs61824238    T    C    772.66    FSFilter60;MQFilter40    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=244;DS;Dels=0.0;FS=107.323;HRun=0;HaplotypeScore=3.7179;MQ=33.12;MQ0=13;MQRankSum=-9.029;QD=3.17;ReadPosRankSum=1.581;SNPEFF_AMINO_ACID_CHANGE=H69R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_143767144_143767881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:148,96:244:99:803,0,4011
1    143767778    rs6604516    T    A    144.67    MQFilter40;QDFilter2    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.524;DB;DP=237;DS;Dels=0.0;FS=2.458;HRun=0;HaplotypeScore=4.8323;MQ=38.95;MQ0=18;MQRankSum=-12.255;QD=0.61;ReadPosRankSum=1.96;SNPEFF_AMINO_ACID_CHANGE=Q24L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_143767144_143767881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIAL4G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419275    GT:AD:DP:GQ:PL    0/1:130,106:237:99:175,0,4307
1    144013853    rs6600697    T    C    601.07    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=3.889;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7775;MQ=59.47;MQ0=0;MQRankSum=0.55;QD=8.59;ReadPosRankSum=-0.363;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRGAP2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467933    GT:AD:DP:GQ:PL    0/1:47,23:70:99:631,0,1335
1    144013865    rs6600696    T    G    746.25    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.214;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9048;MQ=59.04;MQ0=0;MQRankSum=0.053;QD=8.99;ReadPosRankSum=-2.424;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRGAP2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467933    GT:AD:DP:GQ:PL    0/1:51,31:82:99:776,0,1791
1    144014051    rs1884147    G    A    871.20    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.489;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.44;MQ0=0;MQRankSum=0.435;QD=8.8;ReadPosRankSum=-0.926;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRGAP2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467933    GT:AD:DP:GQ:PL    0/1:64,35:99:99:901,0,2099
1    144014068    rs1884146    T    C    1486.78    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.9;DB;DP=87;Dels=0.0;FS=3.862;HRun=0;HaplotypeScore=1.6988;MQ=58.22;MQ0=0;MQRankSum=-0.42;QD=17.09;ReadPosRankSum=0.208;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRGAP2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467933    GT:AD:DP:GQ:PL    0/1:34,53:87:99:1517,0,970
1    144014234    rs6600695    A    G    38.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.69;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRGAP2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467933    GT:AD:DP:GQ:PL    0/1:2,2:4:68.77:69,0,70
1    144169684    .    T    TC    457.88    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=1;HaplotypeScore=97.4284;IndelType=I;MQ=17.01;MQ0=2;QD=14.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-377D14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369372    GT:AD:DP:GQ:PL    1/1:3,28:12:34.93:500,35,0
1    144169706    rs138402002    C    T    249.01    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.59;MQ0=7;MQRankSum=3.789;QD=6.73;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-377D14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369372    GT:AD:DP:GQ:PL    1/1:25,12:37:13.34:282,13,0
1    144169738    .    T    C    153.40    MQFilter40    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.217;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.25;MQ0=39;MQRankSum=3.302;QD=2.43;ReadPosRankSum=-1.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-377D14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369372    GT:AD:DP:GQ:PL    0/1:50,13:63:23.32:183,0,23
1    144180817    .    G    C    47.34    MQFilter40    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.21;MQ0=1;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-377D14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356801    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:79,6,0
1    144220700    .    G    C    53.67    MQFilter40;QDFilter2    AB=0.966;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DP=232;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.81;MQ0=207;MQRankSum=-1.136;QD=0.23;ReadPosRankSum=-0.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-377D14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421555    GT:AD:DP:GQ:PL    0/1:224,8:232:83.67:84,0,485
1    144220777    .    T    C    2752.07    MQFilter40    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.459;DP=235;DS;Dels=0.0;FS=18.876;HRun=2;HaplotypeScore=7.4759;MQ=39.93;MQ0=23;MQRankSum=1.111;QD=11.71;ReadPosRankSum=6.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-377D14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421555    GT:AD:DP:GQ:PL    0/1:130,105:235:99:2782,0,3214
1    144220807    .    A    C    2429.03    MQFilter40    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=4.467;DP=248;DS;Dels=0.0;FS=13.044;HRun=0;HaplotypeScore=5.1211;MQ=35.29;MQ0=59;MQRankSum=0.566;QD=9.79;ReadPosRankSum=-2.018;SNPEFF_AMINO_ACID_CHANGE=D25A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144220787_144220959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-377D14.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369373    GT:AD:DP:GQ:PL    0/1:155,91:248:99:2459,0,2896
1    144220850    .    T    G    164.79    MQFilter40;QDFilter2    AB=0.947;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DP=247;DS;Dels=0.0;FS=37.445;HRun=1;HaplotypeScore=0.6651;MQ=23.14;MQ0=164;MQRankSum=2.732;QD=0.66;ReadPosRankSum=-3.051;SNPEFF_AMINO_ACID_CHANGE=C39W;SNPEFF_CODON_CHANGE=tgT/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144220787_144220959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-377D14.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369373    GT:AD:DP:GQ:PL    0/1:234,13:247:99:195,0,2044
1    144520905    rs3124577    A    C    70.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=19.22;MQ0=5;QD=6.37;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL592284.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538264    GT:AD:DP:GQ:PL    1/1:0,10:11:9.03:102,9,0
1    144612173    rs2653681    A    G    192.09    MQFilter40    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=28.85;MQ0=1;MQRankSum=-3.206;QD=3.77;ReadPosRankSum=-0.814;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL592284.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476442    GT:AD:DP:GQ:PL    0/1:28,23:51:99:222,0,707
1    144612217    rs3928328    C    T    72.64    MQFilter40    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.842;DB;DP=35;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=25.2;MQ0=2;MQRankSum=-0.255;QD=2.08;ReadPosRankSum=-0.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL592284.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476442    GT:AD:DP:GQ:PL    0/1:24,11:35:99:103,0,454
1    144612613    rs3009751    A    G    237.73    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.373;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.37;MQ0=3;MQRankSum=-0.951;QD=9.91;ReadPosRankSum=0.739;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL592284.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476442    GT:AD:DP:GQ:PL    0/1:10,14:24:99:268,0,267
1    144614931    rs149803590    G    A    160.50    MQFilter40    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=3.085;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=34.03;MQ0=2;MQRankSum=-2.689;QD=5.94;ReadPosRankSum=-0.708;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421407    GT:AD:DP:GQ:PL    0/1:16,11:27:99:190,0,464
1    144615080    .    A    G    134.58    FSFilter60;MQFilter40;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.786;DP=111;Dels=0.0;FS=78.773;HRun=1;HaplotypeScore=2.9108;MQ=35.97;MQ0=5;MQRankSum=-0.827;QD=1.21;ReadPosRankSum=-0.597;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421407    GT:AD:DP:GQ:PL    0/1:93,18:111:99:165,0,1948
1    144617119    rs12057892    A    C    465.24    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.939;DB;DP=143;Dels=0.0;FS=25.704;HRun=1;HaplotypeScore=0.9958;MQ=38.75;MQ0=21;MQRankSum=-8.495;QD=3.25;ReadPosRankSum=0.938;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334866    GT:AD:DP:GQ:PL    0/1:77,66:143:99:495,0,2367
1    144617915    .    G    A    40.25    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=32.62;MQ0=0;MQRankSum=-0.922;QD=2.52;ReadPosRankSum=-1.573;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334866    GT:AD:DP:GQ:PL    0/1:10,6:16:70.24:70,0,221
1    144617926    .    G    A    34.23    MQFilter40;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.19;MQ0=0;MQRankSum=-1.733;QD=1.9;ReadPosRankSum=-0.796;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334866    GT:AD:DP:GQ:PL    0/1:12,6:18:64.22:64,0,277
1    144618070    rs55646423    G    A    576.05    MQFilter40    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=7.743;DB;DP=250;DS;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=2.8293;MQ=30.05;MQ0=29;MQRankSum=-0.77;QD=2.3;ReadPosRankSum=-0.619;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334866    GT:AD:DP:GQ:PL    0/1:195,55:250:99:606,0,3138
1    144618144    rs61809736    A    G    2578.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=176;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6641;MQ=24.32;MQ0=16;QD=14.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334866    GT:AD:DP:GQ:PL    1/1:0,175:176:99:2612,243,0
1    144618201    rs61809737    T    C    178.24    MQFilter40;QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.513;DB;DP=232;DS;Dels=0.0;FS=38.997;HRun=1;HaplotypeScore=8.7218;MQ=20.12;MQ0=69;MQRankSum=-0.524;QD=0.77;ReadPosRankSum=-1.644;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334866    GT:AD:DP:GQ:PL    0/1:184,45:232:99:208,0,2155
1    144618354    rs61809738    T    C    161.29    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=0.102;DB;DP=59;Dels=0.0;FS=2.997;HRun=1;HaplotypeScore=0.0;MQ=29.32;MQ0=10;MQRankSum=-2.049;QD=2.73;ReadPosRankSum=0.283;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334866    GT:AD:DP:GQ:PL    0/1:36,23:59:99:191,0,812
1    144619318    rs58974605    G    A    1163.87    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.283;DB;DP=123;Dels=0.0;FS=5.858;HRun=2;HaplotypeScore=0.0;MQ=45.48;MQ0=3;MQRankSum=-6.861;QD=9.46;ReadPosRankSum=-0.898;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334866    GT:AD:DP:GQ:PL    0/1:59,64:123:99:1194,0,1869
1    144619346    rs4649563    G    A    1857.65    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.117;DB;DP=185;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.8313;MQ=48.53;MQ0=2;MQRankSum=-5.458;QD=10.04;ReadPosRankSum=-0.324;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000421407    GT:AD:DP:GQ:PL    0/1:89,95:185:99:1888,0,2679
1    144619483    rs4067648    A    C    932.44    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=5.138;DB;DP=79;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.12;MQ0=4;MQRankSum=-4.512;QD=11.8;ReadPosRankSum=0.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448172    GT:AD:DP:GQ:PL    0/1:39,40:79:99:962,0,1110
1    144619903    rs71527379    T    A    292.21    MQFilter40    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=4.4;DB;DP=121;Dels=0.0;FS=33.231;HRun=0;HaplotypeScore=0.0;MQ=27.37;MQ0=10;MQRankSum=0.673;QD=2.41;ReadPosRankSum=0.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448172    GT:AD:DP:GQ:PL    0/1:95,26:121:99:322,0,1429
1    144620009    .    T    C    36.44    MQFilter40;QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=1.32;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=9.31;MQ0=156;MQRankSum=-0.406;QD=0.15;ReadPosRankSum=0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448172    GT:AD:DP:GQ:PL    0/1:203,44:248:66.43:66,0,252
1    144620091    rs151155946    C    T    80.70    MQFilter40;QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=203;DS;Dels=0.0;FS=2.769;HRun=0;HaplotypeScore=3.3339;MQ=13.06;MQ0=91;MQRankSum=-1.41;QD=0.4;ReadPosRankSum=0.396;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448172    GT:AD:DP:GQ:PL    0/1:157,46:203:99:111,0,391
1    144621374    rs138385062    C    A    207.65    MQFilter40;QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=9.57;MQ0=147;MQRankSum=1.435;QD=1.21;ReadPosRankSum=-0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NBPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423405    GT:AD:DP:GQ:PL    0/1:143,27:171:99:238,0,204
1    144811836    rs320820    G    A    194.67    MQFilter40;QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=201;Dels=0.0;FS=52.032;HRun=0;HaplotypeScore=7.773;MQ=28.68;MQ0=19;MQRankSum=-2.922;QD=0.97;ReadPosRankSum=-0.164;SNPEFF_AMINO_ACID_CHANGE=L31;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144811744_144811957;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338347    GT:AD:DP:GQ:PL    0/1:152,49:201:99:225,0,3212
1    144811924    rs320821    T    G    4204.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=190;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.8099;MQ=31.67;MQ0=29;QD=22.01;SNPEFF_AMINO_ACID_CHANGE=S61A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144811744_144811957;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338347    GT:AD:DP:GQ:PL    1/1:0,189:190:99:4204,364,0
1    144815968    .    G    A    134.80    MQFilter40;QDFilter2    AB=0.89;AC=1;AF=0.50;AN=2;BaseQRankSum=0.525;DP=155;Dels=0.0;FS=19.16;HRun=2;HaplotypeScore=0.734;MQ=26.79;MQ0=24;MQRankSum=1.201;QD=0.86;ReadPosRankSum=-0.018;SNPEFF_AMINO_ACID_CHANGE=V189I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144815936_144816008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338347    GT:AD:DP:GQ:PL    0/1:138,17:155:99:165,0,2206
1    144816175    rs61807095    C    T    222.85    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.051;DB;DP=24;Dels=0.0;FS=3.274;HRun=3;HaplotypeScore=0.0;MQ=36.52;MQ0=4;MQRankSum=-0.532;QD=9.29;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465793    GT:AD:DP:GQ:PL    0/1:15,9:24:99:253,0,321
1    144816305    rs320826    C    G    71.16    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=37.46;MQ0=2;MQRankSum=-0.55;QD=7.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465793    GT:AD:DP:GQ:PL    0/1:6,3:9:99:101,0,106
1    144825577    rs633899    G    A    1520.46    MQFilter40    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.994;DB;DP=212;DS;Dels=0.0;FS=2.312;HRun=0;HaplotypeScore=0.9993;MQ=32.34;MQ0=41;MQRankSum=2.576;QD=7.17;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:147,65:212:99:1550,0,2626
1    144825681    rs662222    T    C    324.66    MQFilter40    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.549;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=19.86;MQ0=82;MQRankSum=-0.779;QD=2.25;ReadPosRankSum=1.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:92,52:144:99:355,0,800
1    144826097    .    C    T    120.08    MQFilter40;QDFilter2    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DP=101;Dels=0.0;FS=8.226;HRun=1;HaplotypeScore=4.298;MQ=20.12;MQ0=11;MQRankSum=-0.788;QD=1.19;ReadPosRankSum=-0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:76,23:101:99:150,0,1039
1    144826128    .    T    G    97.34    MQFilter40;QDFilter2    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DP=170;Dels=0.0;FS=21.66;HRun=0;HaplotypeScore=3.8033;MQ=16.3;MQ0=54;MQRankSum=-0.92;QD=0.57;ReadPosRankSum=0.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:136,33:170:99:127,0,1164
1    144828299    .    C    T    359.07    MQFilter40    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.372;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9545;MQ=29.59;MQ0=3;MQRankSum=-1.57;QD=13.81;ReadPosRankSum=-0.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:8,18:26:99:389,0,136
1    144828300    .    A    G    352.14    MQFilter40    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9545;MQ=29.59;MQ0=3;MQRankSum=-1.57;QD=13.54;ReadPosRankSum=0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:8,18:26:99:382,0,137
1    144828335    rs4999139    T    C    394.44    MQFilter40    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=1.861;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9711;MQ=32.26;MQ0=8;MQRankSum=-3.241;QD=8.77;ReadPosRankSum=3.305;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:15,29:45:99:424,0,438
1    144828404    rs597581    T    A    1699.22    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=5.413;DB;DP=199;Dels=0.0;FS=8.878;HRun=2;HaplotypeScore=10.5862;MQ=38.22;MQ0=14;MQRankSum=-0.231;QD=8.54;ReadPosRankSum=1.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:112,87:199:99:1729,0,2985
1    144828418    rs79756393    C    T    514.56    MQFilter40    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=231;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.6966;MQ=36.72;MQ0=29;MQRankSum=-2.286;QD=2.23;ReadPosRankSum=1.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:190,33:231:99:545,0,4746
1    144828436    rs67593205    CT    C    569.15    PASS    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=4.266;DB;DP=192;DS;FS=3.306;HRun=5;HaplotypeScore=1797.8406;IndelType=D;MQ=35.83;MQ0=44;MQRankSum=-3.089;QD=2.28;ReadPosRankSum=1.771;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:195,55:192:99:608,0,5450
1    144828449    .    A    T    635.90    HaplotypeScoreFilter13;MQFilter40    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=3.843;DP=250;DS;Dels=0.0;FS=2.385;HRun=1;HaplotypeScore=62.6101;MQ=35.55;MQ0=46;MQRankSum=-3.127;QD=2.54;ReadPosRankSum=1.938;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:184,66:250:99:666,0,4548
1    144828454    rs9424774    G    C    3714.60    HaplotypeScoreFilter13;MQFilter40    AB=0.22;AC=1;AF=0.50;AN=2;BaseQRankSum=0.524;DB;DP=250;DS;Dels=0.0;FS=1.953;HRun=0;HaplotypeScore=65.7265;MQ=36.02;MQ0=47;MQRankSum=-7.756;QD=14.86;ReadPosRankSum=2.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:55,195:250:99:3715,0,1400
1    144828465    rs9424775    T    G    592.91    MQFilter40    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DB;DP=250;DS;Dels=0.0;FS=8.307;HRun=0;HaplotypeScore=9.6784;MQ=35.28;MQ0=48;MQRankSum=-1.606;QD=2.37;ReadPosRankSum=-1.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:200,50:250:99:623,0,4507
1    144828484    rs78376309    G    A    59.90    MQFilter40;QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=243;DS;Dels=0.0;FS=3.998;HRun=0;HaplotypeScore=3.3761;MQ=32.31;MQ0=65;MQRankSum=-0.828;QD=0.25;ReadPosRankSum=-2.281;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:210,32:243:89.89:90,0,4078
1    144828548    .    G    A    66.14    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=3.677;DP=250;DS;Dels=0.0;FS=55.55;HRun=0;HaplotypeScore=32.0334;MQ=33.15;MQ0=36;MQRankSum=-0.801;QD=0.26;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=G130S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144828541_144830300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:218,32:250:96.14:96,0,5009
1    144828583    rs28712116    G    A    364.26    FSFilter60;MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.053;DB;DP=250;DS;Dels=0.0;FS=95.948;HRun=0;HaplotypeScore=6.8799;MQ=36.63;MQ0=19;MQRankSum=-2.739;QD=1.46;ReadPosRankSum=0.839;SNPEFF_AMINO_ACID_CHANGE=L141;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144828541_144830300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:201,49:250:99:394,0,5370
1    144828764    rs114576842    G    T    45.15    MQFilter40;QDFilter2    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.88;DB;DP=250;DS;Dels=0.0;FS=7.733;HRun=0;HaplotypeScore=10.3286;MQ=38.96;MQ0=12;MQRankSum=-5.945;QD=0.18;ReadPosRankSum=1.088;SNPEFF_AMINO_ACID_CHANGE=E202*;SNPEFF_CODON_CHANGE=Gaa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_144828541_144830300;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:203,46:250:75.14:75,0,5642
1    144828765    rs1043478    A    T    49.93    MQFilter40;QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=250;DS;Dels=0.0;FS=10.938;HRun=0;HaplotypeScore=10.3286;MQ=39.05;MQ0=10;MQRankSum=-6.837;QD=0.2;ReadPosRankSum=0.938;SNPEFF_AMINO_ACID_CHANGE=E202V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144828541_144830300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:187,46:250:79.92:80,0,5699
1    144828784    rs78667364    A    G    687.61    MQFilter40    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=250;DS;Dels=0.0;FS=8.237;HRun=1;HaplotypeScore=1.8533;MQ=38.44;MQ0=18;MQRankSum=-4.933;QD=2.75;ReadPosRankSum=-0.972;SNPEFF_AMINO_ACID_CHANGE=*208;SNPEFF_CODON_CHANGE=taA/taG;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_1_144828541_144830300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281815    GT:AD:DP:GQ:PL    0/1:181,68:250:99:718,0,4951
1    144828845    rs61807990    A    T    830.60    MQFilter40    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=3.966;DB;DP=232;DS;Dels=0.0;FS=8.707;HRun=3;HaplotypeScore=3.6043;MQ=34.5;MQ0=24;MQRankSum=-1.537;QD=3.58;ReadPosRankSum=-1.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:167,65:232:99:861,0,3348
1    144828857    .    C    G    732.50    HaplotypeScoreFilter13;MQFilter40    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DP=213;DS;Dels=0.0;FS=6.639;HRun=0;HaplotypeScore=15.8364;MQ=33.18;MQ0=24;MQRankSum=-2.075;QD=3.44;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:155,57:213:99:762,0,2931
1    144828910    rs12124435    A    T    458.86    MQFilter40    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=5.654;DB;DP=112;DS;Dels=0.0;FS=2.915;HRun=2;HaplotypeScore=0.0;MQ=29.25;MQ0=13;MQRankSum=-0.563;QD=4.06;ReadPosRankSum=-0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488888    GT:AD:DP:GQ:PL    0/1:74,38:112:99:489,0,1489
1    144852321    rs1055315    C    A    77.40    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.024;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.17;MQ0=1;MQRankSum=-1.893;QD=4.84;ReadPosRankSum=1.763;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:11,5:16:99:107,0,345
1    144852390    rs61804988    C    T    210.22    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.481;DB;DP=27;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=0.7887;MQ=53.78;MQ0=1;MQRankSum=-1.5;QD=7.79;ReadPosRankSum=1.104;SNPEFF_AMINO_ACID_CHANGE=W2351*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_144851427_144852443;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000369356    GT:AD:DP:GQ:PL    0/1:17,10:27:99:240,0,487
1    144852476    rs1616066    T    C    61.40    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=27;Dels=0.0;FS=7.166;HRun=0;HaplotypeScore=4.7654;MQ=41.52;MQ0=0;MQRankSum=-2.151;QD=2.27;ReadPosRankSum=2.044;SNPEFF_AMINO_ACID_CHANGE=P2235;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144851424_144852499;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:19,8:27:91.39:91,0,581
1    144852545    rs1699760    C    T    151.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=15;Dels=0.0;FS=11.553;HRun=0;HaplotypeScore=2.7823;MQ=46.23;MQ0=0;MQRankSum=2.062;QD=10.1;ReadPosRankSum=1.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:9,6:15:99:182,0,229
1    144852646    rs4649487    G    A    32.76    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=1.865;MQ=45.7;MQ0=0;MQRankSum=1.067;QD=4.1;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:6,2:8:62.76:63,0,100
1    144853897    rs144314008    C    A    35.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=-0.736;QD=11.78;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:65,0,27
1    144853935    rs78508148    G    C    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=-0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:69,0,33
1    144853993    rs1699759    G    A    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
1    144854052    rs1698584    G    A    107.85    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.57;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:1,4:5:27.96:138,0,28
1    144854083    rs1699758    G    A    90.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9882;MQ=57.66;MQ0=0;MQRankSum=0.741;QD=9.1;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,202
1    144854180    rs4997148    T    C    124.57    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.486;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.96;MQ0=1;MQRankSum=-1.592;QD=4.3;ReadPosRankSum=0.955;SNPEFF_AMINO_ACID_CHANGE=A2222;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144854165_144854211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:21,8:29:99:155,0,636
1    144854277    rs1699757    A    G    326.87    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.867;DB;DP=21;Dels=0.0;FS=4.242;HRun=0;HaplotypeScore=0.0;MQ=54.72;MQ0=2;MQRankSum=0.95;QD=15.57;ReadPosRankSum=0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:8,13:21:99:357,0,270
1    144854351    rs599643    A    C    506.48    PASS    AB=0.105;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.054;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.61;MQ0=0;MQRankSum=-0.351;QD=26.66;ReadPosRankSum=-2.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:2,17:19:32.83:536,0,33
1    144854376    rs2274128    C    A    102.81    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=22;Dels=0.0;FS=2.605;HRun=0;HaplotypeScore=4.9974;MQ=56.85;MQ0=0;MQRankSum=-1.197;QD=4.67;ReadPosRankSum=1.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:17,5:22:99:133,0,597
1    144854380    rs2798857    T    C    370.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DB;DP=22;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=4.9974;MQ=56.85;MQ0=0;MQRankSum=1.154;QD=16.86;ReadPosRankSum=0.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:10,12:22:99:401,0,320
1    144854397    rs833193    T    C    660.94    PASS    AB=0.16;AC=1;AF=0.50;AN=2;BaseQRankSum=1.665;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=55.96;MQ0=1;MQRankSum=-1.588;QD=26.44;ReadPosRankSum=1.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:4,21:25:79.32:691,0,79
1    144854412    rs77812232    A    C    242.19    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=2.032;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.42;MQ0=1;MQRankSum=0.952;QD=8.65;ReadPosRankSum=1.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:19,9:28:99:272,0,577
1    144854454    rs2274129    A    C    136.63    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=3.626;DB;DP=51;Dels=0.0;FS=2.451;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=1;MQRankSum=-2.413;QD=2.68;ReadPosRankSum=1.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:40,11:51:99:167,0,1441
1    144854491    rs2798856    T    G    731.06    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DB;DP=97;Dels=0.0;FS=2.216;HRun=0;HaplotypeScore=0.8667;MQ=54.4;MQ0=0;MQRankSum=2.675;QD=7.54;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:68,29:97:99:761,0,1994
1    144854497    rs2653676    A    G    751.73    HaplotypeScoreFilter13    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.981;DB;DP=105;Dels=0.0;FS=2.155;HRun=0;HaplotypeScore=25.1292;MQ=53.88;MQ0=0;MQRankSum=3.171;QD=7.16;ReadPosRankSum=0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:73,32:105:99:782,0,2193
1    144854501    rs142453097    CCT    C    265.97    PASS    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=3.623;DB;DP=110;FS=4.621;HRun=0;HaplotypeScore=873.8842;IndelType=D;MQ=54.75;MQ0=0;MQRankSum=2.256;QD=2.37;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:97,15:110:99:305,0,4882
1    144854528    rs78461771    A    G    606.87    HaplotypeScoreFilter13    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.62;DB;DP=139;Dels=0.0;FS=17.311;HRun=0;HaplotypeScore=22.3623;MQ=53.51;MQ0=1;MQRankSum=-7.74;QD=4.37;ReadPosRankSum=-0.199;SNPEFF_AMINO_ACID_CHANGE=I2208;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144854518_144854656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:102,37:139:99:637,0,3272
1    144854537    rs3851872    T    C    1342.60    HaplotypeScoreFilter13    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.826;DB;DP=136;Dels=0.0;FS=4.872;HRun=0;HaplotypeScore=21.5608;MQ=53.99;MQ0=1;MQRankSum=-4.649;QD=9.87;ReadPosRankSum=-0.132;SNPEFF_AMINO_ACID_CHANGE=E2205;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144854518_144854656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:79,57:136:99:1373,0,2498
1    144854581    rs78371650    T    C    2123.29    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=169;Dels=0.0;FS=1.265;HRun=0;HaplotypeScore=0.0;MQ=54.39;MQ0=2;MQRankSum=-1.167;QD=12.56;ReadPosRankSum=-1.319;SNPEFF_AMINO_ACID_CHANGE=T2191A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144854518_144854656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:87,82:169:99:2153,0,2603
1    144854594    rs79028512    G    T    1004.08    HaplotypeScoreFilter13    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.365;DB;DP=170;Dels=0.0;FS=4.347;HRun=0;HaplotypeScore=87.5658;MQ=55.11;MQ0=2;MQRankSum=-5.485;QD=5.91;ReadPosRankSum=0.432;SNPEFF_AMINO_ACID_CHANGE=L2186;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144854518_144854656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:123,47:170:99:1034,0,3963
1    144854597    rs3851873    T    C    1223.46    HaplotypeScoreFilter13    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=4.452;DB;DP=176;Dels=0.0;FS=6.919;HRun=1;HaplotypeScore=92.295;MQ=55.05;MQ0=2;MQRankSum=-1.411;QD=6.95;ReadPosRankSum=0.049;SNPEFF_AMINO_ACID_CHANGE=R2185;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144854518_144854656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:64,111:176:99:1253,0,2045
1    144854675    rs79179886    C    T    300.66    QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=1.874;DB;DP=153;Dels=0.0;FS=2.265;HRun=1;HaplotypeScore=4.3321;MQ=55.96;MQ0=0;MQRankSum=0.804;QD=1.97;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:132,21:153:99:331,0,4165
1    144854730    rs75855616    A    G    184.71    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=1.622;DB;DP=63;Dels=0.0;FS=2.366;HRun=0;HaplotypeScore=1.4538;MQ=57.83;MQ0=0;MQRankSum=-1.032;QD=2.93;ReadPosRankSum=0.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:52,11:63:99:215,0,1875
1    144854750    rs75538208    G    A    87.76    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.07;MQ0=1;MQRankSum=-0.052;QD=2.04;ReadPosRankSum=-1.923;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:35,8:43:99:118,0,1203
1    144854793    rs5004098    C    T    300.70    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.66;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8271;MQ=54.44;MQ0=1;MQRankSum=0.099;QD=13.07;ReadPosRankSum=1.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:13,10:23:99:331,0,327
1    144854799    rs5004097    C    T    231.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.995;MQ=54.17;MQ0=1;MQRankSum=-0.076;QD=10.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:12,10:22:99:261,0,372
1    144854836    rs61805002    C    T    57.60    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=1.031;QD=5.24;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:6,5:11:87.59:88,0,190
1    144854844    rs61805003    A    T    55.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.248;QD=6.19;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526664    GT:AD:DP:GQ:PL    0/1:6,3:9:85.67:86,0,202
1    144855812    rs1699754    T    C    63.99    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.295;DB;DP=23;Dels=0.0;FS=2.197;HRun=1;HaplotypeScore=0.0;MQ=54.75;MQ0=0;MQRankSum=-3.606;QD=2.78;ReadPosRankSum=1.225;SNPEFF_AMINO_ACID_CHANGE=S2141;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144855740_144855883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:17,6:23:93.99:94,0,626
1    144855866    rs1698582    A    G    88.65    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=31;Dels=0.0;FS=4.809;HRun=0;HaplotypeScore=0.0;MQ=51.76;MQ0=0;MQRankSum=-3.95;QD=2.86;ReadPosRankSum=0.655;SNPEFF_AMINO_ACID_CHANGE=G2123;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144855740_144855883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:23,8:31:99:119,0,635
1    144855935    rs1698581    A    G    93.95    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.301;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.53;MQ0=0;MQRankSum=-3.575;QD=4.08;ReadPosRankSum=0.167;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481227    GT:AD:DP:GQ:PL    0/1:16,7:23:99:124,0,471
1    144856780    rs61805019    G    A    46.61    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.71;MQ0=0;MQRankSum=-1.758;QD=2.91;ReadPosRankSum=0.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481227    GT:AD:DP:GQ:PL    0/1:12,4:16:76.60:77,0,436
1    144857068    rs905324    A    T    573.69    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.87;MQ0=0;MQRankSum=0.913;QD=11.71;ReadPosRankSum=-0.852;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481227    GT:AD:DP:GQ:PL    0/1:30,19:49:99:604,0,882
1    144857436    rs1778132    G    A    336.18    MQFilter40    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.848;DB;DP=38;Dels=0.0;FS=2.447;HRun=1;HaplotypeScore=0.0;MQ=34.68;MQ0=0;MQRankSum=0.499;QD=8.85;ReadPosRankSum=0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481227    GT:AD:DP:GQ:PL    0/1:21,17:38:99:366,0,487
1    144857876    rs1698578    T    G    250.54    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.245;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=51.15;MQ0=0;MQRankSum=0.612;QD=13.19;ReadPosRankSum=-1.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479369    GT:AD:DP:GQ:PL    0/1:9,10:19:99:281,0,307
1    144859624    rs1699820    T    C    121.05    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=51.31;MQ0=0;MQRankSum=-1.067;QD=15.13;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479369    GT:AD:DP:GQ:PL    0/1:2,6:8:59.61:151,0,60
1    144859720    rs678786    G    C    801.64    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=2.417;DB;DP=39;Dels=0.0;FS=1.869;HRun=3;HaplotypeScore=0.0;MQ=55.79;MQ0=0;MQRankSum=-0.283;QD=20.55;ReadPosRankSum=-1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479369    GT:AD:DP:GQ:PL    0/1:9,30:39:99:832,0,219
1    144860026    rs1699819    G    C    995.53    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.804;DB;DP=98;Dels=0.0;FS=4.583;HRun=0;HaplotypeScore=0.9832;MQ=54.41;MQ0=0;MQRankSum=0.019;QD=10.16;ReadPosRankSum=-1.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479369    GT:AD:DP:GQ:PL    0/1:61,37:98:99:1026,0,1897
1    144860131    rs1699818    A    G    243.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.73;MQ0=1;MQRankSum=0.529;QD=13.51;ReadPosRankSum=0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479369    GT:AD:DP:GQ:PL    0/1:10,8:18:99:273,0,296
1    144863130    rs61806601    G    A    69.64    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=48.5;MQ0=0;MQRankSum=-0.45;QD=3.67;ReadPosRankSum=0.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494734    GT:AD:DP:GQ:PL    0/1:15,4:19:99:100,0,453
1    144863207    rs1698593    C    T    238.34    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.9536;MQ=50.87;MQ0=0;MQRankSum=-3.006;QD=3.78;ReadPosRankSum=-0.611;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494734    GT:AD:DP:GQ:PL    0/1:47,15:63:99:268,0,1579
1    144863208    rs1699813    A    G    466.36    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.861;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.9536;MQ=50.87;MQ0=0;MQRankSum=-2.939;QD=7.4;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494734    GT:AD:DP:GQ:PL    0/1:39,23:63:99:496,0,1252
1    144863401    rs71225704    T    C    675.94    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.618;DB;DP=124;Dels=0.0;FS=22.578;HRun=1;HaplotypeScore=4.3381;MQ=52.56;MQ0=1;MQRankSum=2.5;QD=5.45;ReadPosRankSum=0.321;SNPEFF_AMINO_ACID_CHANGE=E1895G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144863318_144863442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:93,31:124:99:706,0,3146
1    144863505    rs642016    A    G    102.70    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.207;DB;DP=48;Dels=0.0;FS=2.184;HRun=1;HaplotypeScore=0.9989;MQ=55.56;MQ0=0;MQRankSum=-0.954;QD=2.14;ReadPosRankSum=-0.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494734    GT:AD:DP:GQ:PL    0/1:40,8:48:99:133,0,1432
1    144863613    rs1699812    C    T    229.59    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9469;MQ=59.71;MQ0=0;MQRankSum=0.48;QD=22.96;ReadPosRankSum=0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494734    GT:AD:DP:GQ:PL    0/1:2,8:10:34.88:260,0,35
1    144864454    rs1747948    G    A    67.22    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.02;MQ0=0;MQRankSum=0.361;QD=7.47;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494734    GT:AD:DP:GQ:PL    0/1:5,4:9:97.22:97,0,184
1    144865850    rs1613780    G    T    2833.95    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.522;DB;DP=242;DS;Dels=0.0;FS=3.736;HRun=2;HaplotypeScore=1.5661;MQ=59.78;MQ0=0;MQRankSum=-0.455;QD=11.71;ReadPosRankSum=-0.224;SNPEFF_AMINO_ACID_CHANGE=D1804E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144865810_144865929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:142,100:242:99:2864,0,4519
1    144866400    rs924666    T    C    420.81    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=58.27;MQ0=0;MQRankSum=0.024;QD=15.59;ReadPosRankSum=-2.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:13,14:27:99:451,0,446
1    144866509    rs924667    G    A    2365.62    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=7.206;DB;DP=131;Dels=0.0;FS=2.093;HRun=1;HaplotypeScore=1.8928;MQ=59.68;MQ0=0;MQRankSum=1.444;QD=18.06;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:59,72:131:99:2396,0,1612
1    144866643    rs1620560    G    A    3077.73    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.043;DB;DP=205;DS;Dels=0.0;FS=5.598;HRun=0;HaplotypeScore=2.7145;MQ=59.78;MQ0=0;MQRankSum=0.052;QD=15.01;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=R1761C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144866592_144866723;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:97,108:205:99:3108,0,2939
1    144866662    rs1064044    T    C    3004.18    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.413;DB;DP=185;DS;Dels=0.0;FS=8.722;HRun=0;HaplotypeScore=1.9562;MQ=59.75;MQ0=0;MQRankSum=1.909;QD=16.24;ReadPosRankSum=-1.09;SNPEFF_AMINO_ACID_CHANGE=E1754;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144866592_144866723;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:81,104:185:99:3034,0,2638
1    144868170    rs1628310    C    T    1018.29    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.425;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.74;MQ0=0;MQRankSum=1.683;QD=13.95;ReadPosRankSum=-0.899;SNPEFF_AMINO_ACID_CHANGE=A1651T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144867921_144868172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1048,0,1104
1    144868204    rs1747951    A    C    609.40    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.254;DB;DP=51;Dels=0.0;FS=9.237;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.048;QD=11.95;ReadPosRankSum=-0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:30,21:51:99:639,0,954
1    144868239    rs1618966    G    A    90.01    PASS    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=0.457;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.671;QD=2.9;ReadPosRankSum=0.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:26,5:31:99:120,0,944
1    144868350    rs677338    T    C    84.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
1    144871738    rs1698605    C    A    1263.87    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.92;DB;DP=106;Dels=0.0;FS=2.61;HRun=0;HaplotypeScore=0.9894;MQ=59.78;MQ0=0;MQRankSum=0.978;QD=11.92;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=A1742S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144871696_144871881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369354    GT:AD:DP:GQ:PL    0/1:59,47:106:99:1294,0,1784
1    144871755    rs1778159    A    T    1375.87    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.844;DB;DP=116;Dels=0.0;FS=7.366;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.011;QD=11.86;ReadPosRankSum=0.741;SNPEFF_AMINO_ACID_CHANGE=V1736E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144871696_144871881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369354    GT:AD:DP:GQ:PL    0/1:63,53:116:99:1406,0,1849
1    144871782    rs1778158    A    G    1251    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=104;Dels=0.0;FS=0.735;HRun=2;HaplotypeScore=1.6918;MQ=59.56;MQ0=0;MQRankSum=2.021;QD=12.03;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=L1727P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144871696_144871881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369354    GT:AD:DP:GQ:PL    0/1:53,51:104:99:1281,0,1537
1    144871889    rs1698606    A    C    502.19    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.649;DB;DP=50;Dels=0.0;FS=1.407;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.73;QD=10.04;ReadPosRankSum=0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:29,21:50:99:532,0,995
1    144873794    rs1610833    C    T    1262.66    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.013;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.006;QD=17.3;ReadPosRankSum=1.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:34,39:73:99:1293,0,1131
1    144873818    rs1610566    A    G    1626.16    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.92;DB;DP=103;Dels=0.0;FS=10.941;HRun=0;HaplotypeScore=2.4078;MQ=59.78;MQ0=0;MQRankSum=0.504;QD=15.79;ReadPosRankSum=2.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:47,55:103:99:1656,0,1526
1    144873840    rs1627335    A    G    2372.85    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=145;Dels=0.0;FS=8.573;HRun=2;HaplotypeScore=0.8321;MQ=59.52;MQ0=0;MQRankSum=0.834;QD=16.36;ReadPosRankSum=-1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:64,81:145:99:2403,0,2072
1    144873887    rs1699787    C    T    3576.32    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=225;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.3382;MQ=59.84;MQ0=0;MQRankSum=-0.269;QD=15.89;ReadPosRankSum=1.202;SNPEFF_AMINO_ACID_CHANGE=Q1646;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144873877_144874029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:107,118:225:99:3576,0,3348
1    144873962    rs11341221    CT    C    2018.31    PASS    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=7.478;DB;DP=248;DS;FS=0.0;HRun=1;HaplotypeScore=931.4644;IndelType=D;MQ=60.17;MQ0=0;MQRankSum=0.977;QD=8.14;ReadPosRankSum=1.13;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_144873877_144874029;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:179,69:248:99:2057,0,7490
1    144874038    rs1419160    T    C    3611.91    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.248;DB;DP=210;DS;Dels=0.0;FS=7.338;HRun=2;HaplotypeScore=4.3749;MQ=59.94;MQ0=0;MQRankSum=0.833;QD=17.2;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:92,117:210:99:3612,0,2933
1    144874070    rs1610565    C    T    2328.43    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.717;DB;DP=141;Dels=0.0;FS=3.379;HRun=0;HaplotypeScore=1.9787;MQ=59.7;MQ0=0;MQRankSum=0.378;QD=16.51;ReadPosRankSum=-1.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:64,76:141:99:2358,0,2144
1    144874088    rs1419158    G    C    1841.73    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.1;DB;DP=123;Dels=0.0;FS=1.079;HRun=2;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.424;QD=14.97;ReadPosRankSum=-0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:57,66:123:99:1872,0,1860
1    144874489    rs1699788    G    A    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,72
1    144874578    rs2296229    C    T    78.40    PASS    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=2.31;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:29,5:34:99:108,0,1010
1    144874641    rs1610771    G    C    1008.63    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.469;DB;DP=83;Dels=0.0;FS=6.704;HRun=2;HaplotypeScore=2.4521;MQ=59.72;MQ0=0;MQRankSum=0.015;QD=12.15;ReadPosRankSum=-1.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1039,0,1449
1    144874760    rs1610774    T    C    1837.33    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=144;Dels=0.0;FS=2.13;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=0.216;QD=12.76;ReadPosRankSum=0.697;SNPEFF_AMINO_ACID_CHANGE=E1572;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144874681_144874904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:81,63:144:99:1867,0,2543
1    144874815    rs1778155    T    C    224.75    PASS    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=106;Dels=0.0;FS=2.297;HRun=0;HaplotypeScore=3.6514;MQ=59.72;MQ0=0;MQRankSum=-0.707;QD=2.12;ReadPosRankSum=0.149;SNPEFF_AMINO_ACID_CHANGE=H1554R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144874681_144874904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:88,17:106:99:255,0,2928
1    144874950    rs1747957    G    A    475.05    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.155;DB;DP=41;Dels=0.0;FS=1.632;HRun=2;HaplotypeScore=2.1101;MQ=58.98;MQ0=0;MQRankSum=0.183;QD=11.59;ReadPosRankSum=-0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:22,18:41:99:505,0,643
1    144875799    rs764983    G    A    106.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=11.84;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,180
1    144877176    rs2762875    C    T    597.13    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=1.753;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.99;MQ0=0;MQRankSum=-6.618;QD=8.18;ReadPosRankSum=-0.967;SNPEFF_AMINO_ACID_CHANGE=R1460Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144877036_144877271;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:47,26:73:99:627,0,1394
1    144877366    rs1807092    A    G    131.63    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-1.286;QD=8.23;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:10,6:16:99:162,0,334
1    144877390    rs1807093    G    A    61.86    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.18;MQ0=0;MQRankSum=0.278;QD=5.62;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:7,4:11:91.85:92,0,228
1    144878928    rs2762876    G    T    984.53    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.69;MQ0=0;MQRankSum=1.041;QD=13.13;ReadPosRankSum=1.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:44,31:75:99:1015,0,1492
1    144879090    rs1778120    T    C    1033.29    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.851;DB;DP=204;DS;Dels=0.0;FS=16.801;HRun=0;HaplotypeScore=1.7297;MQ=59.77;MQ0=0;MQRankSum=0.395;QD=5.07;ReadPosRankSum=1.17;SNPEFF_AMINO_ACID_CHANGE=K1410E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144879035_144879563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:158,46:204:99:1063,0,5187
1    144879264    rs2798901    A    G    3000.80    PASS    AB=0.331;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.727;DB;DP=160;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.71;MQ0=0;MQRankSum=-1.022;QD=18.75;ReadPosRankSum=-1.352;SNPEFF_AMINO_ACID_CHANGE=W1352R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144879035_144879563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:53,107:160:99:3031,0,1389
1    144879375    rs1747958    T    C    3070.17    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.254;DB;DP=224;Dels=0.0;FS=1.068;HRun=0;HaplotypeScore=0.8321;MQ=58.55;MQ0=0;MQRankSum=-1.121;QD=13.71;ReadPosRankSum=0.405;SNPEFF_AMINO_ACID_CHANGE=K1315E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144879035_144879563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:107,117:224:99:3100,0,3399
1    144880832    rs12568796    T    C    507.92    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.125;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=59.65;MQ0=0;MQRankSum=1.29;QD=4.23;ReadPosRankSum=-0.615;SNPEFF_AMINO_ACID_CHANGE=K1222E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144880742_144880861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:94,26:120:99:538,0,3166
1    144881389    rs1614163    T    C    645.60    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.39;DB;DP=67;Dels=0.0;FS=10.652;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-0.759;QD=9.64;ReadPosRankSum=-0.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:44,23:67:99:676,0,1501
1    144882581    rs1699836    A    G    1170.31    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.174;DB;DP=118;Dels=0.0;FS=2.669;HRun=0;HaplotypeScore=1.7046;MQ=59.65;MQ0=0;MQRankSum=2.012;QD=9.92;ReadPosRankSum=0.128;SNPEFF_AMINO_ACID_CHANGE=I1146;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144882446_144882881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369354    GT:AD:DP:GQ:PL    0/1:70,47:118:99:1200,0,2295
1    144882823    rs1698647    C    T    3007.59    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.85;DB;DP=239;DS;Dels=0.0;FS=3.63;HRun=2;HaplotypeScore=1.9856;MQ=59.9;MQ0=0;MQRankSum=-0.594;QD=12.58;ReadPosRankSum=-0.77;SNPEFF_AMINO_ACID_CHANGE=A1066T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144882446_144882881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369354    GT:AD:DP:GQ:PL    0/1:129,110:239:99:3038,0,3991
1    144882912    rs1698646    G    T    378.69    PASS    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=1.072;DB;DP=110;DS;Dels=0.0;FS=3.533;HRun=1;HaplotypeScore=1.97;MQ=59.79;MQ0=0;MQRankSum=-0.298;QD=3.44;ReadPosRankSum=0.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:91,19:110:99:409,0,3087
1    144886063    rs1625285    T    C    470.03    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=47;Dels=0.0;FS=2.912;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.964;QD=10.0;ReadPosRankSum=0.587;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:26,21:47:99:500,0,891
1    144886092    rs1343472    C    T    814.03    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.447;DB;DP=67;Dels=0.0;FS=9.685;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.604;QD=12.15;ReadPosRankSum=1.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:39,28:67:99:844,0,1329
1    144886197    rs1698624    A    T    2611.83    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.319;DB;DP=198;Dels=0.0;FS=7.71;HRun=0;HaplotypeScore=3.4939;MQ=59.77;MQ0=0;MQRankSum=1.78;QD=13.19;ReadPosRankSum=0.85;SNPEFF_AMINO_ACID_CHANGE=F1013I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144886097_144886329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369354    GT:AD:DP:GQ:PL    0/1:103,95:198:99:2642,0,3237
1    144886409    rs1620507    A    C    1159.11    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.37;MQ0=0;MQRankSum=1.748;QD=17.56;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:27,39:66:99:1189,0,907
1    144892089    rs1614098    G    T    269.93    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=50.73;MQ0=0;MQRankSum=0.085;QD=20.76;ReadPosRankSum=-0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533963    GT:AD:DP:GQ:PL    0/1:3,10:13:45.34:300,0,45
1    144892149    rs1698709    G    A    423.20    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.608;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.26;MQ0=0;MQRankSum=-1.207;QD=20.15;ReadPosRankSum=1.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533963    GT:AD:DP:GQ:PL    0/1:6,15:21:99:453,0,149
1    144892368    rs1698708    A    T    520.94    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.393;DB;DP=76;Dels=0.0;FS=2.746;HRun=0;HaplotypeScore=1.5782;MQ=59.7;MQ0=0;MQRankSum=-0.305;QD=6.85;ReadPosRankSum=0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:53,23:76:99:551,0,1805
1    144892710    rs1699826    C    A    820.09    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.25;MQ0=0;MQRankSum=-0.857;QD=16.08;ReadPosRankSum=-0.104;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:25,26:51:99:850,0,861
1    144892788    rs607984    C    A    88.56    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.72;MQ0=0;MQRankSum=-1.92;QD=11.07;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:3,5:8:99:119,0,107
1    144909956    rs638260    G    A    406.46    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=2.311;DB;DP=70;Dels=0.0;FS=6.17;HRun=2;HaplotypeScore=2.8402;MQ=60.0;MQ0=0;MQRankSum=-0.951;QD=5.81;ReadPosRankSum=1.981;SNPEFF_AMINO_ACID_CHANGE=D531;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144909869_144909960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:51,19:70:99:436,0,1529
1    144910082    rs638780    A    G    315.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:348,27,0
1    144911702    rs1747928    C    A    142.29    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.33;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:1,6:7:21.59:172,0,22
1    144911704    rs1778105    G    C    135.27    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=19.32;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:1,6:7:20.71:165,0,21
1    144912153    rs1628172    A    G    1811.11    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.555;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5778;MQ=60.0;MQ0=0;MQRankSum=-1.329;QD=21.56;ReadPosRankSum=-0.604;SNPEFF_AMINO_ACID_CHANGE=C495R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144912130_144912294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:20,64:84:99:1841,0,500
1    144912233    rs1629011    C    T    929.42    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=4.835;DB;DP=67;Dels=0.0;FS=2.355;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.558;QD=13.87;ReadPosRankSum=-0.321;SNPEFF_AMINO_ACID_CHANGE=R468H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144912130_144912294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:34,33:67:99:959,0,906
1    144915412    rs1698684    T    C    672.11    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=118;Dels=0.0;FS=2.678;HRun=0;HaplotypeScore=2.4951;MQ=58.85;MQ0=0;MQRankSum=-0.584;QD=5.7;ReadPosRankSum=-0.969;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496263    GT:AD:DP:GQ:PL    0/1:89,29:118:99:702,0,3120
1    144915561    rs1778111    G    A    2855.16    HaplotypeScoreFilter13    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=34.8605;MQ=53.65;MQ0=1;MQRankSum=-0.762;QD=18.78;ReadPosRankSum=0.86;SNPEFF_AMINO_ACID_CHANGE=R409*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_144915445_144915639;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:50,100:151:99:2885,0,1346
1    144915568    rs143827095    A    T    720.30    HaplotypeScoreFilter13    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=154;Dels=0.0;FS=5.048;HRun=0;HaplotypeScore=35.892;MQ=52.89;MQ0=1;MQRankSum=-1.197;QD=4.68;ReadPosRankSum=-1.021;SNPEFF_AMINO_ACID_CHANGE=R406;SNPEFF_CODON_CHANGE=cgT/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144915445_144915639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:118,36:154:99:750,0,3692
1    144915624    rs1778112    G    A    1725.99    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=1.144;DB;DP=114;Dels=0.0;FS=4.902;HRun=1;HaplotypeScore=1.9664;MQ=50.09;MQ0=1;MQRankSum=-5.71;QD=15.14;ReadPosRankSum=-1.573;SNPEFF_AMINO_ACID_CHANGE=L388;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144915445_144915639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:49,65:114:99:1756,0,1541
1    144915794    rs1778113    C    T    107.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=55.16;MQ0=0;MQRankSum=-1.638;QD=13.46;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496263    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,130
1    144916370    rs68164265    GT    G    483.55    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.278;DB;DP=32;FS=0.0;HRun=2;HaplotypeScore=78.4866;IndelType=D;MQ=59.62;MQ0=0;MQRankSum=1.187;QD=15.11;ReadPosRankSum=1.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496263    GT:AD:DP:GQ:PL    0/1:16,16:32:99:523,0,624
1    144916486    rs1699798    T    G    3950.22    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=4.609;DB;DP=212;Dels=0.0;FS=1.165;HRun=1;HaplotypeScore=1.1567;MQ=59.56;MQ0=0;MQRankSum=-1.708;QD=18.63;ReadPosRankSum=0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496263    GT:AD:DP:GQ:PL    0/1:89,123:212:99:3950,0,2745
1    144916493    rs1699799    A    G    3854.48    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-11.025;DB;DP=239;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=0.5784;MQ=59.71;MQ0=0;MQRankSum=1.406;QD=16.13;ReadPosRankSum=-0.564;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496263    GT:AD:DP:GQ:PL    0/1:97,142:239:99:3854,0,3238
1    144916676    rs1698683    C    T    2053.48    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=249;DS;Dels=0.0;FS=0.546;HRun=0;HaplotypeScore=2.9938;MQ=59.72;MQ0=0;MQRankSum=0.442;QD=8.25;ReadPosRankSum=0.161;SNPEFF_AMINO_ACID_CHANGE=W347*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_144916570_144916749;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:169,80:249:99:2083,0,5466
1    144916748    rs1747930    C    G    4240.50    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=4.394;DB;DP=222;DS;Dels=0.0;FS=1.222;HRun=0;HaplotypeScore=2.309;MQ=59.79;MQ0=0;MQRankSum=1.393;QD=19.1;ReadPosRankSum=0.285;SNPEFF_AMINO_ACID_CHANGE=S323T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144916570_144916749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:92,130:222:99:4240,0,2816
1    144916995    rs601274    A    T    78.65    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.66;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532801    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:109,0,27
1    144917199    rs1699800    C    T    63.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532801    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:93,0,31
1    144917546    rs1698682    A    G    4067.99    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.386;DB;DP=249;DS;Dels=0.0;FS=8.678;HRun=1;HaplotypeScore=7.5833;MQ=59.58;MQ0=0;MQRankSum=0.612;QD=16.34;ReadPosRankSum=1.383;SNPEFF_AMINO_ACID_CHANGE=L307;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144917499_144917636;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:114,135:249:99:4068,0,3742
1    144917809    .    T    C    2414.71    PASS    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DP=250;DS;Dels=0.0;FS=0.618;HRun=0;HaplotypeScore=1.9815;MQ=48.47;MQ0=1;MQRankSum=0.86;QD=9.66;ReadPosRankSum=1.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532801    GT:AD:DP:GQ:PL    0/1:154,96:250:99:2445,0,4783
1    144917827    rs11295415    CA    C    2581.22    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=11.889;DB;DP=235;DS;FS=3.942;HRun=2;HaplotypeScore=1340.8639;IndelType=D;MQ=47.4;MQ0=1;MQRankSum=1.064;QD=10.32;ReadPosRankSum=1.419;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_144917819_144917932;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:158,92:235:99:2620,0,5721
1    144917841    rs1698681    T    C    4222.55    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=250;DS;Dels=0.0;FS=2.636;HRun=0;HaplotypeScore=1.865;MQ=47.05;MQ0=1;MQRankSum=0.34;QD=16.89;ReadPosRankSum=-0.939;SNPEFF_AMINO_ACID_CHANGE=H269R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144917819_144917932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:99,151:250:99:4223,0,2725
1    144918034    rs2655804    A    G    643.06    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.936;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.87;MQ0=0;MQRankSum=-0.176;QD=12.37;ReadPosRankSum=-0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532801    GT:AD:DP:GQ:PL    0/1:30,22:52:99:673,0,969
1    144918957    rs1061308    T    A    3658.34    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.739;DB;DP=237;DS;Dels=0.0;FS=4.868;HRun=0;HaplotypeScore=5.4446;MQ=59.13;MQ0=0;MQRankSum=0.728;QD=15.44;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=E197V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144918833_144918991;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479408    GT:AD:DP:GQ:PL    0/1:111,126:237:99:3658,0,3480
1    144919008    rs147459235    AC    A    2577.46    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=8.542;DB;DP=217;DS;FS=7.361;HRun=2;HaplotypeScore=855.3516;IndelType=D;MQ=59.86;MQ0=0;MQRankSum=2.414;QD=11.88;ReadPosRankSum=-0.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:133,84:217:99:2616,0,4993
1    144919094    rs1698680    C    T    1064.85    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=0.661;QD=16.64;ReadPosRankSum=-0.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:29,35:64:99:1095,0,967
1    144922109    rs1343469    A    G    838.12    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=3.52;DB;DP=64;Dels=0.0;FS=8.978;HRun=0;HaplotypeScore=2.5494;MQ=59.28;MQ0=0;MQRankSum=-0.566;QD=13.1;ReadPosRankSum=2.252;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:35,29:64:99:868,0,1211
1    144922171    rs1343470    C    T    772.92    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.99;DB;DP=44;Dels=0.0;FS=2.624;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.801;QD=17.57;ReadPosRankSum=0.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:19,25:44:99:803,0,542
1    144922523    rs2455994    C    T    3115.47    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.802;DB;DP=250;DS;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.906;QD=12.46;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=R295H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144922519_144922638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369349    GT:AD:DP:GQ:PL    0/1:149,101:250:99:3145,0,4564
1    144922583    rs1359300    G    A    4909.16    PASS    AB=0.384;AC=1;AF=0.50;AN=2;BaseQRankSum=2.909;DB;DP=250;DS;Dels=0.0;FS=2.98;HRun=1;HaplotypeScore=0.9734;MQ=59.82;MQ0=0;MQRankSum=1.277;QD=19.64;ReadPosRankSum=-0.027;SNPEFF_AMINO_ACID_CHANGE=S275L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144922519_144922638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369349    GT:AD:DP:GQ:PL    0/1:96,154:250:99:4909,0,2802
1    144922861    rs1698650    C    T    126.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=10.56;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:6,6:12:99:157,0,136
1    144923394    rs1778125    G    T    82.93    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=20.73;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:1,3:4:14.64:113,0,15
1    144923503    rs1778126    C    T    321.25    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=54.44;MQ0=0;MQRankSum=0.761;QD=24.71;ReadPosRankSum=-0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:3,10:13:77.77:351,0,78
1    144923535    rs1778127    A    G    588.66    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=2.737;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.101;MQ=56.17;MQ0=0;MQRankSum=-1.237;QD=18.99;ReadPosRankSum=2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:12,19:31:99:619,0,389
1    144923823    rs11268079    TAGGAAGAAACGGCA    T    3093.42    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=6.592;DB;DP=90;FS=4.77;HRun=0;HaplotypeScore=1079.8115;IndelType=D;MQ=48.63;MQ0=0;MQRankSum=-4.04;QD=33.99;ReadPosRankSum=-1.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:54,37:90:99:3132,0,4689
1    144930369    rs1778086    T    C    115.41    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.43;MQ0=0;MQRankSum=-2.181;QD=10.49;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:5,6:11:99:145,0,161
1    144930405    rs72306530    TTATC    T    596    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=4.433;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=197.5852;IndelType=D;MQ=50.16;MQ0=0;MQRankSum=-4.387;QD=21.29;ReadPosRankSum=0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:16,12:28:99:635,0,1273
1    144930441    rs2261219    G    T    376.23    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=52.32;MQ0=0;MQRankSum=-2.85;QD=9.65;ReadPosRankSum=-1.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:20,19:39:99:406,0,710
1    144930571    rs2762866    C    A    2141.88    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.302;DB;DP=136;Dels=0.0;FS=5.326;HRun=0;HaplotypeScore=0.9867;MQ=58.26;MQ0=0;MQRankSum=-0.183;QD=15.63;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:64,72:136:99:2172,0,1880
1    144930596    rs2762867    C    A    2512.20    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.701;DB;DP=145;Dels=0.0;FS=6.348;HRun=0;HaplotypeScore=1.6988;MQ=58.36;MQ0=0;MQRankSum=-0.596;QD=17.33;ReadPosRankSum=-1.018;SNPEFF_AMINO_ACID_CHANGE=P371;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144930584_144932365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:61,84:145:99:2542,0,1597
1    144930940    rs2147326    T    C    2154.91    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=3.4;DB;DP=119;Dels=0.0;FS=2.49;HRun=1;HaplotypeScore=0.7887;MQ=59.22;MQ0=0;MQRankSum=0.341;QD=18.11;ReadPosRankSum=0.979;SNPEFF_AMINO_ACID_CHANGE=K257E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144930584_144932365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:44,75:119:99:2185,0,1266
1    144931087    rs41315684    T    C    457.20    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=1.218;DB;DP=101;Dels=0.0;FS=5.073;HRun=0;HaplotypeScore=1.9557;MQ=59.77;MQ0=0;MQRankSum=-0.146;QD=4.53;ReadPosRankSum=0.188;SNPEFF_AMINO_ACID_CHANGE=T208A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144930584_144932365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:80,21:101:99:487,0,2661
1    144931330    rs2762745    C    T    3563.99    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.448;DB;DP=212;Dels=0.0;FS=1.065;HRun=0;HaplotypeScore=4.3201;MQ=59.78;MQ0=0;MQRankSum=-0.922;QD=16.81;ReadPosRankSum=1.545;SNPEFF_AMINO_ACID_CHANGE=A127T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144930584_144932365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:95,117:212:99:3564,0,2990
1    144931392    rs2798893    G    A    4291.64    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=2.959;DB;DP=237;Dels=0.0;FS=1.636;HRun=0;HaplotypeScore=4.5878;MQ=59.59;MQ0=0;MQRankSum=-0.782;QD=18.11;ReadPosRankSum=1.186;SNPEFF_AMINO_ACID_CHANGE=A106V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144930584_144932365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:94,143:237:99:4292,0,2375
1    144931461    rs41315685    A    T    1151.33    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.364;DB;DP=204;DS;Dels=0.0;FS=6.465;HRun=1;HaplotypeScore=0.6651;MQ=59.64;MQ0=0;MQRankSum=0.313;QD=5.64;ReadPosRankSum=-0.192;SNPEFF_AMINO_ACID_CHANGE=L83Q;SNPEFF_CODON_CHANGE=cTa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144930584_144932365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313431    GT:AD:DP:GQ:PL    0/1:154,50:204:99:1181,0,4946
1    144931727    rs2985363    G    A    584    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.25;DB;DP=53;Dels=0.0;FS=2.587;HRun=0;HaplotypeScore=1.8583;MQ=59.04;MQ0=0;MQRankSum=-0.45;QD=11.02;ReadPosRankSum=-0.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:26,26:53:99:614,0,793
1    144946403    rs2798888    T    C    43.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=14.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497529    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
1    144946510    rs2488977    C    T    439.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497529    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:472,36,0
1    144946768    rs2762733    G    A    1668.94    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.781;DB;DP=107;Dels=0.0;FS=1.65;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.285;QD=15.6;ReadPosRankSum=0.253;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    0/1:49,58:107:99:1699,0,1503
1    144946876    rs2798887    C    T    306.37    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.228;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=51.38;MQ0=0;MQRankSum=-2.11;QD=13.32;ReadPosRankSum=0.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    0/1:9,14:23:99:336,0,265
1    144946883    rs2762732    G    C    284.13    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=50.49;MQ0=0;MQRankSum=-1.992;QD=13.53;ReadPosRankSum=0.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    0/1:8,13:21:99:314,0,267
1    144946893    rs2798886    C    G    262.09    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.369;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.98;MQ0=0;MQRankSum=-1.634;QD=15.42;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    0/1:5,12:17:99:292,0,159
1    144946908    rs4491020    C    T    208.12    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.678;QD=18.92;ReadPosRankSum=2.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    0/1:4,7:11:99:238,0,122
1    144946958    rs4439318    G    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
1    144946979    rs2798885    A    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    144951880    rs141695068    A    T    336.91    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.787;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.69;MQ0=2;MQRankSum=-3.843;QD=9.36;ReadPosRankSum=1.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464103    GT:AD:DP:GQ:PL    0/1:20,16:36:99:367,0,660
1    144951959    rs142985095    T    C    58.24    QDFilter2    AB=0.887;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.018;DB;DP=115;Dels=0.0;FS=6.374;HRun=1;HaplotypeScore=0.8941;MQ=44.16;MQ0=3;MQRankSum=-1.861;QD=0.51;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464103    GT:AD:DP:GQ:PL    0/1:102,13:115:88.23:88,0,3221
1    144951973    rs77471170    T    C    2760.76    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.26;DB;DP=141;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.1374;MQ=45.04;MQ0=3;MQRankSum=-0.168;QD=19.58;ReadPosRankSum=0.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464103    GT:AD:DP:GQ:PL    0/1:49,92:141:99:2791,0,1244
1    144952078    rs71220421    C    A    2032.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.68;DB;DP=231;DS;Dels=0.0;FS=19.705;HRun=0;HaplotypeScore=3.5478;MQ=43.11;MQ0=13;MQRankSum=-0.68;QD=8.8;ReadPosRankSum=1.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464103    GT:AD:DP:GQ:PL    0/1:138,92:231:99:2063,0,3543
1    144952207    rs3121544    C    T    881.10    MQFilter40    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=1.993;DB;DP=243;DS;Dels=0.0;FS=9.302;HRun=1;HaplotypeScore=3.5409;MQ=33.29;MQ0=17;MQRankSum=-3.683;QD=3.63;ReadPosRankSum=-1.144;SNPEFF_AMINO_ACID_CHANGE=R171K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144951760_144952376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    0/1:180,63:243:99:911,0,4129
1    144952220    rs139438772    C    T    1452.94    MQFilter40    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.453;DB;DP=233;DS;Dels=0.0;FS=12.832;HRun=0;HaplotypeScore=2.3665;MQ=31.36;MQ0=23;MQRankSum=-1.65;QD=6.24;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=A167T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144951760_144952376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369347    GT:AD:DP:GQ:PL    0/1:141,92:233:99:1483,0,2991
1    144994654    rs147804991    G    A    167.44    PASS    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=0.097;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=12.9975;MQ=60.0;MQ0=0;MQRankSum=-0.245;QD=2.33;ReadPosRankSum=1.256;SNPEFF_AMINO_ACID_CHANGE=I163;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144994591_144994701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369348    GT:AD:DP:GQ:PL    0/1:59,13:72:99:197,0,1951
1    144994658    rs1664022    C    A    729.19    HaplotypeScoreFilter13    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=4.15;DB;DP=70;Dels=0.0;FS=0.972;HRun=0;HaplotypeScore=13.8641;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=10.42;ReadPosRankSum=-0.867;SNPEFF_AMINO_ACID_CHANGE=R162L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_144994591_144994701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369348    GT:AD:DP:GQ:PL    0/1:43,27:70:99:759,0,1197
1    144994861    rs2442640    C    T    645.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.857;DB;DP=21;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=30.72;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    1/1:2,19:21:26.72:678,27,0
1    145015877    rs77741369    G    T    602.13    PASS    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.644;DB;DP=248;DS;Dels=0.0;FS=2.416;HRun=0;HaplotypeScore=2.3913;MQ=59.72;MQ0=0;MQRankSum=0.256;QD=2.43;ReadPosRankSum=1.003;SNPEFF_AMINO_ACID_CHANGE=L142I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145015860_145016011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369348    GT:AD:DP:GQ:PL    0/1:214,34:248:99:632,0,7330
1    145016020    rs657162    T    G    5181.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7454;MQ=59.15;MQ0=0;QD=38.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    1/1:0,135:136:99:5182,382,0
1    145016032    rs112952246    C    CA    697.75    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=137;DS;FS=2.666;HRun=9;HaplotypeScore=948.8685;IndelType=I;MQ=59.48;MQ0=0;MQRankSum=-0.268;QD=5.09;ReadPosRankSum=1.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:106,31:137:99:737,0,1451
1    145016034    .    A    AC    618.85    PASS    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DP=136;DS;FS=1.729;HRun=0;HaplotypeScore=943.2001;IndelType=I;MQ=59.48;MQ0=0;MQRankSum=0.308;QD=4.55;ReadPosRankSum=-0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:122,14:136:99:658,0,2559
1    145016035    rs80291027    A    C    207.92    HaplotypeScoreFilter13;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.789;DB;DP=136;DS;Dels=0.0;FS=6.027;HRun=0;HaplotypeScore=46.3335;MQ=59.48;MQ0=0;MQRankSum=-0.488;QD=1.53;ReadPosRankSum=-1.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:114,22:136:99:238,0,2785
1    145020936    rs1778693    A    G    98.39    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.0;QD=7.03;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:9,5:14:99:128,0,317
1    145021024    rs1778692    G    C    410.97    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.135;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.999;MQ=59.51;MQ0=0;MQRankSum=-0.287;QD=10.81;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:24,14:38:99:441,0,837
1    145021034    rs674066    C    A    47.97    QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.999;MQ=59.5;MQ0=0;MQRankSum=0.309;QD=1.3;ReadPosRankSum=-0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:31,6:37:77.97:78,0,1171
1    145021089    rs1613515    G    A    254.41    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=2.277;DB;DP=104;Dels=0.0;FS=9.584;HRun=2;HaplotypeScore=2.744;MQ=59.56;MQ0=0;MQRankSum=0.851;QD=2.45;ReadPosRankSum=1.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:88,16:104:99:284,0,2893
1    145021265    rs673110    A    G    56.62    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3043;MQ=58.92;MQ0=0;MQRankSum=0.413;QD=1.32;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:36,6:43:86.62:87,0,1303
1    145039562    rs1663878    C    T    1477.88    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.962;DB;DP=140;Dels=0.0;FS=4.259;HRun=0;HaplotypeScore=3.645;MQ=59.43;MQ0=0;MQRankSum=0.291;QD=10.56;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313382    GT:AD:DP:GQ:PL    0/1:78,60:140:99:1508,0,2288
1    145039633    rs2762750    C    T    176.62    QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.676;DB;DP=131;Dels=0.0;FS=2.562;HRun=1;HaplotypeScore=2.3919;MQ=59.54;MQ0=0;MQRankSum=0.918;QD=1.35;ReadPosRankSum=-1.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369348    GT:AD:DP:GQ:PL    0/1:115,16:131:99:207,0,3712
1    145074882    rs3845334    G    T    72.23    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.37;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.236;QD=3.61;ReadPosRankSum=-1.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369348    GT:AD:DP:GQ:PL    0/1:16,4:20:99:102,0,603
1    145074939    rs1663854    T    C    656.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.979;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.64;QD=13.14;ReadPosRankSum=-0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369348    GT:AD:DP:GQ:PL    0/1:25,25:50:99:687,0,849
1    145075208    rs6424335    T    A    109.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.24;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369345    GT:AD:DP:GQ:PL    0/1:2,4:6:62.59:139,0,63
1    145075519    rs2596337    G    C    162.80    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.122;QD=9.04;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369345    GT:AD:DP:GQ:PL    0/1:11,7:18:99:193,0,269
1    145075683    rs2762779    C    T    528.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.391;DB;DP=30;Dels=0.0;FS=1.708;HRun=0;HaplotypeScore=0.9665;MQ=59.07;MQ0=0;MQRankSum=0.212;QD=17.62;ReadPosRankSum=0.071;SNPEFF_AMINO_ACID_CHANGE=W60*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_145075630_145076077;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000369345    GT:AD:DP:GQ:PL    0/1:10,20:30:99:559,0,292
1    145075854    rs1663853    G    C    254.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.414;QD=9.09;ReadPosRankSum=-0.591;SNPEFF_AMINO_ACID_CHANGE=G3;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145075630_145076077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369345    GT:AD:DP:GQ:PL    0/1:16,12:28:99:285,0,447
1    145075923    rs6656135    C    T    93.06    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=1.9877;MQ=58.2;MQ0=0;MQRankSum=-0.978;QD=7.16;ReadPosRankSum=-0.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE4DIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527063    GT:AD:DP:GQ:PL    0/1:8,5:13:99:123,0,210
1    145103947    rs2794062    T    C    259.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.158;DB;DP=36;Dels=0.0;FS=3.164;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.923;QD=7.21;ReadPosRankSum=0.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500203    GT:AD:DP:GQ:PL    0/1:24,12:36:99:290,0,726
1    145109456    rs7553975    C    T    240.56    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.811;MQ=59.29;MQ0=0;MQRankSum=1.009;QD=3.7;ReadPosRankSum=-0.385;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:52,13:65:99:271,0,1943
1    145109468    rs2442652    A    G    3157.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.21;MQ0=0;QD=35.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3191,238,0
1    145109493    rs2442651    C    T    938.63    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.982;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6293;MQ=59.09;MQ0=0;MQRankSum=0.238;QD=7.39;ReadPosRankSum=-1.281;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:91,36:127:99:969,0,3260
1    145109549    rs2596331    G    T    1913.10    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=4.141;DB;DP=240;Dels=0.0;FS=8.792;HRun=1;HaplotypeScore=1.5774;MQ=59.42;MQ0=0;MQRankSum=3.076;QD=7.94;ReadPosRankSum=-0.074;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:168,72:240:99:1943,0,5411
1    145109583    rs2794053    C    A    3615.22    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=6.571;DB;DP=250;DS;Dels=0.0;FS=7.044;HRun=1;HaplotypeScore=1.7219;MQ=59.54;MQ0=0;MQRankSum=0.046;QD=14.46;ReadPosRankSum=0.228;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:135,115:250:99:3615,0,4374
1    145109661    rs2655551    G    A    1264.56    PASS    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=4.261;DB;DP=250;DS;Dels=0.0;FS=0.57;HRun=1;HaplotypeScore=4.6744;MQ=59.82;MQ0=0;MQRankSum=0.879;QD=5.06;ReadPosRankSum=1.082;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:193,57:250:99:1295,0,6087
1    145109809    rs2596327    T    A    488.59    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.875;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.945;QD=4.4;ReadPosRankSum=0.512;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:88,23:111:99:519,0,3312
1    145109897    rs2289797    C    T    47.14    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=-0.778;QD=3.37;ReadPosRankSum=0.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:11,3:14:77.14:77,0,409
1    145112414    rs2590131    T    C    369.26    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.8012;MQ=58.76;MQ0=0;MQRankSum=0.063;QD=5.43;ReadPosRankSum=-1.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:49,19:68:99:399,0,1657
1    145112420    rs2794041    C    T    220.65    PASS    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.242;DB;DP=70;Dels=0.0;FS=1.334;HRun=1;HaplotypeScore=11.969;MQ=58.8;MQ0=0;MQRankSum=1.291;QD=3.15;ReadPosRankSum=0.436;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:59,11:70:99:251,0,1852
1    145112428    rs2794040    C    T    302.88    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.994;DB;DP=79;Dels=0.0;FS=1.114;HRun=0;HaplotypeScore=11.8623;MQ=58.94;MQ0=0;MQRankSum=1.848;QD=3.83;ReadPosRankSum=-0.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:63,16:79:99:333,0,2093
1    145112485    rs2794039    C    T    457.45    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=1.035;DB;DP=102;Dels=0.0;FS=4.914;HRun=1;HaplotypeScore=1.7885;MQ=59.41;MQ0=0;MQRankSum=0.933;QD=4.48;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:82,20:102:99:487,0,2417
1    145112758    rs2794038    C    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    145115602    rs7540746    C    T    48.63    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.25;MQ0=0;MQRankSum=-1.201;QD=2.03;ReadPosRankSum=-0.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:20,4:24:78.62:79,0,771
1    145115658    rs11278959    TATTTTTAA    T    1043.64    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=5.662;DB;DP=63;FS=0.0;HRun=0;HaplotypeScore=443.1628;IndelType=D;MQ=54.25;MQ0=0;MQRankSum=-5.646;QD=16.57;ReadPosRankSum=0.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:49,14:63:99:1083,0,6464
1    145115810    rs2655557    A    G    2671.46    HaplotypeScoreFilter13    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.083;DB;DP=188;Dels=0.0;FS=2.528;HRun=0;HaplotypeScore=44.9617;MQ=58.51;MQ0=0;MQRankSum=-0.266;QD=14.21;ReadPosRankSum=0.899;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:92,96:188:99:2701,0,2861
1    145115820    rs2655558    T    C    1191.68    HaplotypeScoreFilter13    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.04;DB;DP=193;Dels=0.0;FS=4.887;HRun=0;HaplotypeScore=44.9617;MQ=58.8;MQ0=0;MQRankSum=1.246;QD=6.14;ReadPosRankSum=0.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:143,50:193:99:1222,0,4724
1    145116027    rs7550440    T    C    226.19    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.071;QD=6.85;ReadPosRankSum=0.546;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SEC22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453618    GT:AD:DP:GQ:PL    0/1:24,9:33:99:256,0,840
1    145209330    rs1738644    G    C    91.80    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=16;Dels=0.0;FS=6.154;HRun=1;HaplotypeScore=0.0;MQ=48.74;MQ0=2;MQRankSum=1.369;QD=5.74;ReadPosRankSum=0.555;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_145209119_145209436;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:9,7:16:99:122,0,171
1    145248811    .    A    G    54.17    MQFilter40;QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=8.4;MQ0=115;MQRankSum=1.076;QD=0.41;ReadPosRankSum=0.17;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000362074    GT:AD:DP:GQ:PL    0/1:100,32:132:84.16:84,0,206
1    145273302    .    A    G    337.12    MQFilter40;QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=3.089;DP=239;Dels=0.0;FS=0.773;HRun=1;HaplotypeScore=4.0553;MQ=39.74;MQ0=30;MQRankSum=0.201;QD=1.41;ReadPosRankSum=-0.522;SNPEFF_AMINO_ACID_CHANGE=R52;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145273185_145273444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:203,36:239:99:367,0,4976
1    145273345    rs75987820    T    C    549.28    PASS    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=2.193;DB;DP=236;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.9231;MQ=48.53;MQ0=0;MQRankSum=0.497;QD=2.33;ReadPosRankSum=-0.469;SNPEFF_AMINO_ACID_CHANGE=S67P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145273185_145273444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:202,34:236:99:579,0,6364
1    145273422    .    C    T    304.47    QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.195;DP=226;DS;Dels=0.0;FS=3.668;HRun=0;HaplotypeScore=4.6802;MQ=47.62;MQ0=0;MQRankSum=0.095;QD=1.35;ReadPosRankSum=0.876;SNPEFF_AMINO_ACID_CHANGE=C92;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145273185_145273444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:195,31:226:99:334,0,5625
1    145273473    .    T    C    262.40    QDFilter2    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=2.827;DP=184;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=44.77;MQ0=0;MQRankSum=1.013;QD=1.43;ReadPosRankSum=0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:156,27:184:99:292,0,4555
1    145273520    rs2793994    G    A    471.60    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=107;Dels=0.0;FS=3.059;HRun=0;HaplotypeScore=4.1281;MQ=40.64;MQ0=1;MQRankSum=0.05;QD=4.41;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:82,24:107:99:502,0,2245
1    145281203    rs147993620    G    A    223.18    MQFilter40    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=15;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=38.77;MQ0=1;MQRankSum=0.811;QD=14.88;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:8,7:15:99:253,0,119
1    145281361    rs147539840    TC    T    684.03    PASS    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=8.35;DB;DP=207;FS=6.52;HRun=2;HaplotypeScore=649.3078;IndelType=D;MQ=40.19;MQ0=0;MQRankSum=0.961;QD=3.0;ReadPosRankSum=-0.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:189,39:207:99:723,0,6742
1    145281408    .    C    T    539.05    PASS    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.235;DP=250;DS;Dels=0.0;FS=3.129;HRun=0;HaplotypeScore=4.944;MQ=43.76;MQ0=0;MQRankSum=-0.191;QD=2.16;ReadPosRankSum=-0.073;SNPEFF_AMINO_ACID_CHANGE=P113L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145281369_145281704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:210,40:250:99:569,0,6552
1    145281543    rs8002    C    T    1443.01    HaplotypeScoreFilter13    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=173;Dels=0.0;FS=1.369;HRun=0;HaplotypeScore=13.467;MQ=47.03;MQ0=0;MQRankSum=-1.17;QD=8.34;ReadPosRankSum=0.153;SNPEFF_AMINO_ACID_CHANGE=T158I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145281369_145281704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:117,56:173:99:1473,0,3687
1    145281613    rs12120756    C    A    126.89    QDFilter2    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.994;DB;DP=138;Dels=0.0;FS=2.282;HRun=0;HaplotypeScore=1.5774;MQ=51.11;MQ0=0;MQRankSum=-0.487;QD=0.92;ReadPosRankSum=-2.079;SNPEFF_AMINO_ACID_CHANGE=S181R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145281369_145281704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:121,17:138:99:157,0,3893
1    145281633    rs28576333    C    A    133.84    QDFilter2    AB=0.891;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.021;DB;DP=128;Dels=0.0;FS=1.126;HRun=0;HaplotypeScore=0.0;MQ=52.43;MQ0=0;MQRankSum=0.743;QD=1.05;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=P188H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145281369_145281704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:114,14:128:99:164,0,3727
1    145281656    rs4649852    A    T    123.27    QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=2.959;DB;DP=116;Dels=0.0;FS=4.735;HRun=0;HaplotypeScore=0.8667;MQ=48.96;MQ0=3;MQRankSum=-0.638;QD=1.06;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=T196S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145281369_145281704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:102,14:116:99:153,0,3183
1    145281780    rs190671398    T    A    79.43    QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=43;Dels=0.0;FS=7.818;HRun=0;HaplotypeScore=0.8321;MQ=54.34;MQ0=0;MQRankSum=0.234;QD=1.85;ReadPosRankSum=0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:35,8:43:99:109,0,1284
1    145281824    rs4089950    T    G    67.01    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=0.658;DB;DP=39;Dels=0.0;FS=4.121;HRun=4;HaplotypeScore=2.9981;MQ=47.83;MQ0=3;MQRankSum=1.337;QD=1.72;ReadPosRankSum=0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:33,6:39:97:97,0,959
1    145282093    .    G    A    290.35    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7356;MQ=49.69;MQ0=1;MQRankSum=-5.791;QD=5.18;ReadPosRankSum=-1.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:39,17:56:99:320,0,1450
1    145290250    rs2746748    T    C    366.12    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=25;Dels=0.0;FS=3.188;HRun=1;HaplotypeScore=0.9998;MQ=59.25;MQ0=0;MQRankSum=-0.354;QD=14.64;ReadPosRankSum=-1.713;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:13,12:25:99:396,0,462
1    145290317    rs77985488    C    T    229.08    HaplotypeScoreFilter13    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=2.572;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=16.9116;MQ=56.71;MQ0=0;MQRankSum=-3.561;QD=2.36;ReadPosRankSum=1.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:79,18:97:99:259,0,2923
1    145290320    rs2949607    C    T    939.20    HaplotypeScoreFilter13    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.998;DB;DP=99;Dels=0.0;FS=4.427;HRun=2;HaplotypeScore=16.9698;MQ=56.33;MQ0=0;MQRankSum=-2.207;QD=9.49;ReadPosRankSum=-0.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:62,37:99:99:969,0,2284
1    145290346    rs2746747    A    G    1946.14    HaplotypeScoreFilter13    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.045;DB;DP=142;Dels=0.0;FS=2.211;HRun=0;HaplotypeScore=21.9803;MQ=54.84;MQ0=1;MQRankSum=-4.209;QD=13.71;ReadPosRankSum=-0.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:73,69:142:99:1976,0,2534
1    145290351    rs2982634    A    G    504.52    HaplotypeScoreFilter13    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=157;Dels=0.0;FS=13.805;HRun=0;HaplotypeScore=26.9752;MQ=54.39;MQ0=1;MQRankSum=-0.759;QD=3.21;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:130,27:157:99:535,0,4459
1    145290377    rs2982633    T    C    1608.49    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.527;DB;DP=213;Dels=0.0;FS=0.685;HRun=1;HaplotypeScore=1.6553;MQ=54.69;MQ0=2;MQRankSum=-7.162;QD=7.55;ReadPosRankSum=0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:137,76:213:99:1638,0,4386
1    145290398    rs4143495    G    A    323.11    HaplotypeScoreFilter13;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=2.624;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=26.9943;MQ=54.95;MQ0=2;MQRankSum=2.844;QD=1.29;ReadPosRankSum=0.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:223,27:250:99:353,0,7025
1    145290401    rs77093221    T    G    479.93    HaplotypeScoreFilter13;QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=27.9858;MQ=55.03;MQ0=2;MQRankSum=-8.41;QD=1.92;ReadPosRankSum=0.673;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:208,42:250:99:510,0,6957
1    145290409    rs77693292    G    A    419.91    QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=0.293;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=55.05;MQ0=2;MQRankSum=-7.649;QD=1.68;ReadPosRankSum=-0.351;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:207,43:250:99:450,0,6859
1    145290498    rs76101707    T    G    763.16    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.924;DB;DP=213;DS;Dels=0.0;FS=6.76;HRun=0;HaplotypeScore=0.0;MQ=56.64;MQ0=0;MQRankSum=-4.995;QD=3.58;ReadPosRankSum=1.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:169,44:213:99:793,0,5623
1    145290535    rs76602996    C    T    286.31    QDFilter2    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=2.761;DB;DP=178;DS;Dels=0.0;FS=1.853;HRun=1;HaplotypeScore=0.7887;MQ=56.29;MQ0=2;MQRankSum=-4.761;QD=1.61;ReadPosRankSum=-1.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:146,32:178:99:316,0,5127
1    145290547    rs77744531    C    A    62.93    HaplotypeScoreFilter13;QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.755;DB;DP=167;DS;Dels=0.0;FS=6.958;HRun=1;HaplotypeScore=26.3441;MQ=56.51;MQ0=2;MQRankSum=-5.714;QD=0.38;ReadPosRankSum=-2.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:139,28:167:92.93:93,0,5030
1    145290553    rs4143494    C    T    279.91    HaplotypeScoreFilter13;QDFilter2    AB=0.869;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.667;DB;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=33.7386;MQ=56.37;MQ0=2;MQRankSum=0.904;QD=1.83;ReadPosRankSum=-1.243;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:133,20:153:99:310,0,4482
1    145290570    rs2725886    G    A    93.15    QDFilter2    AB=0.902;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.705;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.5724;MQ=57.25;MQ0=2;MQRankSum=2.043;QD=0.76;ReadPosRankSum=0.932;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369340    GT:AD:DP:GQ:PL    0/1:110,12:122:99:123,0,3918
1    145293308    rs57959950    G    C    147.92    QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=1.583;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9064;MQ=40.29;MQ0=7;MQRankSum=0.144;QD=0.59;ReadPosRankSum=-1.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:223,27:250:99:178,0,6384
1    145293469    rs6671324    G    C    249.64    QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=2.964;DB;DP=250;DS;Dels=0.0;FS=5.005;HRun=1;HaplotypeScore=6.5362;MQ=50.94;MQ0=1;MQRankSum=-2.449;QD=1.0;ReadPosRankSum=-0.738;SNPEFF_AMINO_ACID_CHANGE=E22Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145293371_145293580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:220,30:250:99:280,0,7140
1    145293498    rs4409714    G    C    126.07    QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=250;DS;Dels=0.0;FS=0.851;HRun=0;HaplotypeScore=2.7156;MQ=45.97;MQ0=15;MQRankSum=-3.44;QD=0.5;ReadPosRankSum=-1.282;SNPEFF_AMINO_ACID_CHANGE=K31N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145293371_145293580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:220,30:250:99:156,0,6987
1    145293510    rs4356110    C    G    115.87    HaplotypeScoreFilter13;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=0.871;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=25.6618;MQ=45.89;MQ0=10;MQRankSum=-2.451;QD=0.46;ReadPosRankSum=-0.83;SNPEFF_AMINO_ACID_CHANGE=F35L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145293371_145293580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:223,27:250:99:146,0,6793
1    145293515    rs12565078    A    G    1707.47    HaplotypeScoreFilter13    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=3.033;DB;DP=250;DS;Dels=0.0;FS=9.105;HRun=0;HaplotypeScore=19.9178;MQ=45.2;MQ0=10;MQRankSum=3.444;QD=6.83;ReadPosRankSum=0.952;SNPEFF_AMINO_ACID_CHANGE=N37S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145293371_145293580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:178,72:250:99:1737,0,4539
1    145293566    rs7526045    G    A    598.27    MQFilter40    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=0.321;DB;DP=246;DS;Dels=0.0;FS=27.69;HRun=1;HaplotypeScore=0.8321;MQ=37.81;MQ0=16;MQRankSum=-2.125;QD=2.43;ReadPosRankSum=-0.997;SNPEFF_AMINO_ACID_CHANGE=R54Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145293371_145293580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:189,57:246:99:628,0,4814
1    145293692    rs7526143    G    A    252.38    MQFilter40    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=120;DS;Dels=0.0;FS=4.068;HRun=1;HaplotypeScore=0.0;MQ=25.59;MQ0=16;MQRankSum=-0.083;QD=2.1;ReadPosRankSum=1.195;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:87,33:120:99:282,0,1367
1    145293826    rs7539630    A    G    85.78    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=2.725;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=53.35;MQ0=0;MQRankSum=-3.075;QD=2.77;ReadPosRankSum=0.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:25,6:31:99:116,0,852
1    145296268    rs4996271    C    T    1509.89    PASS    AB=0.254;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.306;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.5118;MQ=45.21;MQ0=0;MQRankSum=-3.605;QD=19.87;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:17,50:76:99:1540,0,519
1    145296372    rs4068113    A    G    1327.20    MQFilter40    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=2.286;DB;DP=250;DS;Dels=0.0;FS=32.293;HRun=1;HaplotypeScore=9.3371;MQ=36.57;MQ0=49;MQRankSum=-11.356;QD=5.31;ReadPosRankSum=-3.027;SNPEFF_AMINO_ACID_CHANGE=L23;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145296357_145296571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:93,157:250:99:1357,0,2946
1    145296478    rs6663523    G    T    1574.85    MQFilter40    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.636;DB;DP=250;DS;Dels=0.0;FS=1.621;HRun=0;HaplotypeScore=3.3755;MQ=28.43;MQ0=79;MQRankSum=-0.456;QD=6.3;ReadPosRankSum=-2.819;SNPEFF_AMINO_ACID_CHANGE=D134Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145296357_145296571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:112,138:250:99:1605,0,1600
1    145296654    rs4068117    G    A    667.66    MQFilter40    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.033;DB;DP=118;Dels=0.0;FS=8.549;HRun=0;HaplotypeScore=0.0;MQ=22.82;MQ0=40;MQRankSum=-0.327;QD=5.66;ReadPosRankSum=-1.658;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344859    GT:AD:DP:GQ:PL    0/1:82,36:118:99:698,0,1009
1    145297458    rs4068107    G    C    183.86    MQFilter40    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=1.05;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=21.63;MQ0=10;MQRankSum=1.412;QD=5.93;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:22,9:31:99:214,0,143
1    145297817    rs4068088    G    C    1245.20    PASS    AB=0.306;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.858;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=44.02;MQ0=1;MQRankSum=0.491;QD=20.08;ReadPosRankSum=1.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:19,43:62:99:1275,0,372
1    145298070    rs12068486    G    A    112.79    MQFilter40;QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=3.578;DB;DP=135;Dels=0.0;FS=2.295;HRun=0;HaplotypeScore=0.0;MQ=25.45;MQ0=47;MQRankSum=-1.542;QD=0.84;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:103,31:135:99:143,0,1544
1    145298089    rs28605822    G    T    846.58    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=174;Dels=0.0;FS=2.434;HRun=0;HaplotypeScore=9.6491;MQ=22.05;MQ0=85;MQRankSum=1.937;QD=4.87;ReadPosRankSum=1.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:107,67:174:99:877,0,971
1    145298186    rs28507779    C    G    43.61    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.835;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.17;MQ0=225;MQRankSum=-0.033;QD=0.18;ReadPosRankSum=0.1;SNPEFF_AMINO_ACID_CHANGE=P125A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145298155_145298366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:186,62:248:73.60:74,0,446
1    145298604    rs608262    T    C    136.01    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5572;MQ=31.69;MQ0=0;MQRankSum=0.66;QD=10.46;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:7,6:13:99:166,0,192
1    145300087    rs7544347    A    G    290.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.5;MQ0=0;QD=22.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    1/1:0,13:13:36.02:323,36,0
1    145300096    rs9424712    T    C    236.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.4;MQ0=0;QD=21.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    1/1:0,11:11:30.02:270,30,0
1    145301587    rs146347369    G    T    363.35    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.229;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=18.49;MQ0=43;MQRankSum=1.477;QD=3.78;ReadPosRankSum=-0.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:64,32:96:99:393,0,584
1    145301697    rs75611366    C    T    1742.32    MQFilter40    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.985;DB;DP=250;DS;Dels=0.0;FS=6.451;HRun=0;HaplotypeScore=7.3744;MQ=33.28;MQ0=43;MQRankSum=-1.399;QD=6.97;ReadPosRankSum=0.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:153,97:250:99:1772,0,2908
1    145301793    rs75332562    A    G    993.53    MQFilter40    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.654;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.1985;MQ=28.5;MQ0=67;MQRankSum=-1.401;QD=3.97;ReadPosRankSum=-0.14;SNPEFF_AMINO_ACID_CHANGE=A279;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145301720_145301822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:170,80:250:99:1024,0,2847
1    145301802    rs6690575    C    G    743.42    MQFilter40    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=243;DS;Dels=0.0;FS=2.645;HRun=0;HaplotypeScore=1.9572;MQ=27.51;MQ0=70;MQRankSum=-2.191;QD=3.06;ReadPosRankSum=0.711;SNPEFF_AMINO_ACID_CHANGE=L282;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145301720_145301822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:174,69:243:99:773,0,2824
1    145301853    rs61814641    C    G    1109.03    MQFilter40    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=7.093;DB;DP=171;DS;Dels=0.0;FS=10.3;HRun=4;HaplotypeScore=1.8606;MQ=30.37;MQ0=41;MQRankSum=-5.022;QD=6.49;ReadPosRankSum=0.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:69,77:171:99:1139,0,1729
1    145301887    rs6683593    G    A    541.94    MQFilter40    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=140;DS;Dels=0.0;FS=2.506;HRun=0;HaplotypeScore=1.6439;MQ=32.0;MQ0=30;MQRankSum=-0.773;QD=3.87;ReadPosRankSum=-0.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:107,33:140:99:572,0,2045
1    145301907    rs6697832    A    C    991.73    MQFilter40    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=128;Dels=0.0;FS=2.535;HRun=0;HaplotypeScore=0.9997;MQ=33.74;MQ0=23;MQRankSum=-0.297;QD=7.75;ReadPosRankSum=-1.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:87,41:128:99:1022,0,1682
1    145302047    rs3979917    G    T    121.15    MQFilter40    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=17;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=0.0;MQ=39.03;MQ0=4;MQRankSum=-1.493;QD=7.13;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:11,6:17:99:151,0,213
1    145302505    rs74657263    G    C    412.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.14;MQ0=1;QD=14.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    1/1:0,29:29:42.04:446,42,0
1    145302704    rs141935360    A    G    127.53    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=187;Dels=0.0;FS=52.139;HRun=2;HaplotypeScore=27.0218;MQ=31.97;MQ0=18;MQRankSum=-7.192;QD=0.68;ReadPosRankSum=-1.467;SNPEFF_AMINO_ACID_CHANGE=K110R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145302654_145302868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369334    GT:AD:DP:GQ:PL    0/1:129,58:187:99:158,0,3340
1    145303760    .    G    C    196.49    MQFilter40    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DP=21;Dels=0.0;FS=8.921;HRun=1;HaplotypeScore=0.9789;MQ=25.27;MQ0=3;MQRankSum=0.755;QD=9.36;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:10,11:21:99:226,0,142
1    145303971    rs146037073    A    G    88.40    QDFilter2    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.797;DB;DP=225;DS;Dels=0.0;FS=50.203;HRun=0;HaplotypeScore=1.9578;MQ=44.76;MQ0=9;MQRankSum=-6.307;QD=0.39;ReadPosRankSum=0.157;SNPEFF_AMINO_ACID_CHANGE=S185;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145303910_145303982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369334    GT:AD:DP:GQ:PL    0/1:194,31:225:99:118,0,5798
1    145304153    rs79958378    A    G    600.15    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.627;DB;DP=51;Dels=0.0;FS=2.0;HRun=0;HaplotypeScore=0.0;MQ=38.0;MQ0=0;MQRankSum=0.526;QD=11.77;ReadPosRankSum=2.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:30,21:51:99:630,0,870
1    145304180    rs76221302    G    T    50.96    MQFilter40    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=1.964;DB;DP=25;Dels=0.0;FS=2.695;HRun=1;HaplotypeScore=0.0;MQ=34.24;MQ0=0;MQRankSum=0.259;QD=2.04;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:21,4:25:80.95:81,0,525
1    145310197    rs7554921    C    T    1398.26    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=5.969;DB;DP=143;Dels=0.0;FS=5.069;HRun=2;HaplotypeScore=0.0;MQ=29.68;MQ0=6;MQRankSum=-4.783;QD=9.78;ReadPosRankSum=3.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:65,78:143:99:1428,0,1876
1    145310282    rs10910795    C    T    171.44    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.554;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.8521;MQ=29.73;MQ0=5;MQRankSum=1.012;QD=5.36;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:20,12:32:99:201,0,357
1    145310283    rs7546107    G    A    46.01    MQFilter40;QDFilter2    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.333;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.8521;MQ=29.18;MQ0=5;MQRankSum=-2.149;QD=1.53;ReadPosRankSum=-0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:19,11:30:76:76,0,476
1    145310932    rs142756325    C    A    195.91    MQFilter40    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=1.686;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.75;MQ0=7;MQRankSum=-0.304;QD=3.44;ReadPosRankSum=0.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:44,13:57:99:226,0,894
1    145310971    rs139987921    G    C    395.01    MQFilter40    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.52;MQ0=9;MQRankSum=-1.422;QD=3.41;ReadPosRankSum=-1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:94,22:116:99:425,0,1981
1    145310983    rs116247129    G    C    1440.70    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.909;DB;DP=158;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8603;MQ=39.21;MQ0=7;MQRankSum=-1.516;QD=9.12;ReadPosRankSum=-1.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:85,73:158:99:1471,0,2059
1    145311083    .    A    C    2723.73    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=4.981;DP=246;DS;Dels=0.0;FS=6.58;HRun=1;HaplotypeScore=6.6637;MQ=45.11;MQ0=6;MQRankSum=-3.473;QD=11.07;ReadPosRankSum=2.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:135,110:246:99:2754,0,4124
1    145311110    rs141899955    G    C    1238.26    MQFilter40    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=1.413;DB;DP=250;DS;Dels=0.0;FS=2.095;HRun=0;HaplotypeScore=1.5317;MQ=38.18;MQ0=19;MQRankSum=-0.224;QD=4.95;ReadPosRankSum=0.903;SNPEFF_AMINO_ACID_CHANGE=V278L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145311103_145311154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369334    GT:AD:DP:GQ:PL    0/1:195,55:250:99:1268,0,4665
1    145311230    .    C    G    77.76    MQFilter40;QDFilter2    AB=0.887;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.179;DP=213;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8865;MQ=38.39;MQ0=1;MQRankSum=-2.484;QD=0.37;ReadPosRankSum=-2.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:189,24:213:99:108,0,5461
1    145311828    rs12135693    C    G    3445.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=199;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=27.84;MQ0=34;QD=17.23;SNPEFF_AMINO_ACID_CHANGE=F359L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145311792_145311958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369338    GT:AD:DP:GQ:PL    1/1:0,199:199:99:3446,277,0
1    145312707    rs192293322    G    T    105.54    MQFilter40;QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.068;DB;DP=250;DS;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=1.9536;MQ=8.46;MQ0=156;MQRankSum=-2.006;QD=0.42;ReadPosRankSum=-0.982;SNPEFF_AMINO_ACID_CHANGE=D413Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145312678_145312729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369338    GT:AD:DP:GQ:PL    0/1:195,55:250:99:136,0,209
1    145323444    .    G    C    840.87    MQFilter40    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.757;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=24.25;MQ0=7;MQRankSum=4.616;QD=9.45;ReadPosRankSum=-2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:58,31:89:99:871,0,348
1    145323487    .    C    G    243.14    MQFilter40;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.094;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=19.94;MQ0=103;MQRankSum=0.129;QD=0.97;ReadPosRankSum=-0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:221,29:250:99:273,0,2280
1    145323491    .    A    G    206.56    MQFilter40;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.519;DP=249;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=19.74;MQ0=104;MQRankSum=0.432;QD=0.83;ReadPosRankSum=-0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:220,29:249:99:237,0,2256
1    145323539    rs145819114    T    G    1046.89    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.994;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=20.08;MQ0=109;MQRankSum=1.772;QD=4.19;ReadPosRankSum=-0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:175,75:250:99:1077,0,1731
1    145323656    rs75252120    A    T    519.82    PASS    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=0.721;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9996;MQ=41.61;MQ0=10;MQRankSum=-1.192;QD=2.08;ReadPosRankSum=1.151;SNPEFF_AMINO_ACID_CHANGE=I1165F;SNPEFF_CODON_CHANGE=Att/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145323654_145323705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:203,47:250:99:550,0,6493
1    145323757    rs149367355    A    T    4385.97    MQFilter40    AB=0.121;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.701;DB;DP=247;DS;Dels=0.0;FS=17.662;HRun=0;HaplotypeScore=2.307;MQ=26.62;MQ0=19;MQRankSum=-3.974;QD=17.76;ReadPosRankSum=-1.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464433    GT:AD:DP:GQ:PL    0/1:30,217:247:99:4386,0,373
1    145323943    .    C    T    726.21    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.424;DP=66;Dels=0.0;FS=5.911;HRun=0;HaplotypeScore=0.9578;MQ=22.66;MQ0=24;MQRankSum=-0.186;QD=11.0;ReadPosRankSum=2.335;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464433    GT:AD:DP:GQ:PL    0/1:33,33:66:99:756,0,220
1    145325800    .    G    A    268.33    MQFilter40    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DP=51;Dels=0.0;FS=7.048;HRun=0;HaplotypeScore=0.0;MQ=19.31;MQ0=10;MQRankSum=-0.406;QD=5.26;ReadPosRankSum=-0.433;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464433    GT:AD:DP:GQ:PL    0/1:25,26:51:99:298,0,306
1    145325899    .    A    G    53.70    MQFilter40    AC=2;AF=1.00;AN=2;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.64;MQ0=3;QD=3.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464433    GT:AD:DP:GQ:PL    1/1:0,14:14:9:86,9,0
1    145327548    .    A    G    271.67    MQFilter40    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.133;MQ=25.03;MQ0=1;MQRankSum=0.807;QD=13.58;ReadPosRankSum=-0.807;SNPEFF_AMINO_ACID_CHANGE=N1369D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145327493_145327665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:6,13:20:6.91:301,0,7
1    145354109    .    T    C    549.07    MQFilter40    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=3.715;DP=136;Dels=0.0;FS=9.698;HRun=0;HaplotypeScore=0.0;MQ=21.93;MQ0=18;MQRankSum=4.075;QD=4.04;ReadPosRankSum=1.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:103,33:136:99:579,0,1520
1    145354129    .    C    T    565.13    MQFilter40    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DP=162;Dels=0.0;FS=11.084;HRun=0;HaplotypeScore=3.3832;MQ=19.75;MQ0=45;MQRankSum=3.757;QD=3.49;ReadPosRankSum=-2.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:129,33:162:99:595,0,1474
1    145355601    .    T    C    55.71    MQFilter40;QDFilter2    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DP=44;Dels=0.0;FS=2.526;HRun=0;HaplotypeScore=2.8643;MQ=36.1;MQ0=5;MQRankSum=-1.771;QD=1.27;ReadPosRankSum=0.605;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449032    GT:AD:DP:GQ:PL    0/1:37,6:44:85.70:86,0,960
1    145355624    rs142055197    C    T    904.02    MQFilter40    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=2.861;DB;DP=53;Dels=0.0;FS=7.02;HRun=0;HaplotypeScore=0.7887;MQ=38.06;MQ0=2;MQRankSum=-0.22;QD=17.06;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449032    GT:AD:DP:GQ:PL    0/1:21,32:53:99:934,0,479
1    145359049    .    A    G    31.82    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.64;MQ0=24;QD=0.47;SNPEFF_AMINO_ACID_CHANGE=K2997E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145359015_145359187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    1/1:0,67:67:6.01:63,6,0
1    145367466    rs3929731    C    G    893.26    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=97;Dels=0.0;FS=2.252;HRun=0;HaplotypeScore=0.0;MQ=39.27;MQ0=27;MQRankSum=0.126;QD=9.21;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:54,42:97:99:923,0,1010
1    145367657    rs147722843    T    G    279.85    MQFilter40;QDFilter2    AB=0.911;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=248;DS;Dels=0.0;FS=1.002;HRun=0;HaplotypeScore=5.0706;MQ=25.63;MQ0=3;MQRankSum=3.092;QD=1.13;ReadPosRankSum=0.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:226,22:248:99:310,0,1904
1    145367800    .    G    A    262.67    MQFilter40;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=2.864;DP=249;DS;Dels=0.0;FS=0.906;HRun=2;HaplotypeScore=3.2145;MQ=34.22;MQ0=6;MQRankSum=1.467;QD=1.05;ReadPosRankSum=-0.213;SNPEFF_AMINO_ACID_CHANGE=D3466N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145367714_145367822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:222,27:249:99:293,0,4594
1    145367839    .    G    C    919.56    MQFilter40    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=2.988;DP=238;DS;Dels=0.0;FS=10.575;HRun=0;HaplotypeScore=7.6159;MQ=38.75;MQ0=7;MQRankSum=-1.626;QD=3.86;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:189,48:238:99:950,0,5167
1    145367863    rs78014802    A    T    1852.24    MQFilter40    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=7.345;DB;DP=220;DS;Dels=0.0;FS=24.687;HRun=0;HaplotypeScore=2.9653;MQ=37.94;MQ0=8;MQRankSum=-3.786;QD=8.42;ReadPosRankSum=0.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:132,86:220:99:1882,0,3526
1    145367906    rs74761968    A    T    1009.24    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=3.801;DB;DP=157;DS;Dels=0.0;FS=13.701;HRun=0;HaplotypeScore=56.9494;MQ=33.4;MQ0=18;MQRankSum=-4.807;QD=6.43;ReadPosRankSum=-1.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:84,73:157:99:1039,0,1903
1    145367909    .    T    C    288.74    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.815;DP=154;DS;Dels=0.0;FS=28.805;HRun=0;HaplotypeScore=56.9587;MQ=32.97;MQ0=19;MQRankSum=-0.502;QD=1.87;ReadPosRankSum=0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:125,29:154:99:319,0,2577
1    145367910    rs74347725    G    A    371.86    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=0.221;DB;DP=155;DS;Dels=0.0;FS=2.585;HRun=0;HaplotypeScore=56.9587;MQ=32.98;MQ0=20;MQRankSum=-4.262;QD=2.4;ReadPosRankSum=-1.145;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:113,42:155:99:402,0,2662
1    145367919    rs77463801    G    A    279.18    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=0.427;DB;DP=139;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=27.4328;MQ=32.41;MQ0=21;MQRankSum=-2.831;QD=2.01;ReadPosRankSum=2.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:107,32:139:99:309,0,2397
1    145368047    .    C    T    71.26    MQFilter40;QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=3.126;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.43;MQ0=12;MQRankSum=-0.249;QD=1.83;ReadPosRankSum=0.138;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:32,7:39:99:101,0,429
1    145368118    rs71527392    T    A    95.17    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=18;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=28.49;MQ0=0;MQRankSum=1.733;QD=5.29;ReadPosRankSum=0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:12,6:18:99:125,0,243
1    145368146    rs11802634    G    C    62.97    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=30.34;MQ0=0;MQRankSum=0.978;QD=4.84;ReadPosRankSum=0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448873    GT:AD:DP:GQ:PL    0/1:8,5:13:92.97:93,0,189
1    145368461    rs12128680    A    C    1547.57    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=3.095;DB;DP=250;DS;Dels=0.0;FS=4.483;HRun=0;HaplotypeScore=0.9832;MQ=46.85;MQ0=28;MQRankSum=1.763;QD=6.19;ReadPosRankSum=0.267;SNPEFF_AMINO_ACID_CHANGE=E3480A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145368441_145368684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:189,60:250:99:1578,0,5192
1    145368837    rs7414890    C    A    995.87    MQFilter40    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.1575;MQ=37.19;MQ0=6;MQRankSum=-0.099;QD=14.65;ReadPosRankSum=-1.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    0/1:30,38:68:99:1026,0,715
1    145368871    rs7416122    A    G    799.44    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9092;MQ=29.31;MQ0=4;MQRankSum=-1.733;QD=24.98;ReadPosRankSum=1.114;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342960    GT:AD:DP:GQ:PL    1/1:1,31:32:75.17:832,75,0
1    145456732    .    GA    G    35.75    QDFilter2    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=0.345;DP=69;FS=0.0;HRun=14;HaplotypeScore=323.2224;IndelType=D;MQ=57.78;MQ0=0;MQRankSum=0.964;QD=0.52;ReadPosRankSum=0.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3GL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369313    GT:AD:DP:GQ:PL    0/1:55,12:69:74.77:75,0,852
1    145510376    rs147038428    A    G    50.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.0;MQ0=0;QD=16.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNRHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469718    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:83,9,0
1    145517561    rs4471211    C    T    166.57    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=15.14;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369306    GT:AD:DP:GQ:PL    0/1:5,6:11:99:197,0,151
1    145531980    rs4384171    T    C    140    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468261    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:173,15,0
1    145532549    rs1328584    T    C    2409.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=F191;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145532457_145532622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539363    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2442,187,0
1    145532994    rs34834904    GT    G    257.18    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=5.323;DB;DP=47;FS=0.0;HRun=8;HaplotypeScore=172.9553;IndelType=D;MQ=59.25;MQ0=0;MQRankSum=0.074;QD=5.47;ReadPosRankSum=-0.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468261    GT:AD:DP:GQ:PL    0/1:32,15:47:99:296,0,919
1    145533175    rs11590105    T    C    187.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.753;DB;DP=21;Dels=0.0;FS=9.223;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.56;QD=8.93;ReadPosRankSum=-0.709;SNPEFF_AMINO_ACID_CHANGE=L281;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145533055_145533199;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539363    GT:AD:DP:GQ:PL    0/1:14,7:21:99:217,0,445
1    145533314    rs2274619    T    C    275.51    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.611;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.31;QD=7.65;ReadPosRankSum=0.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468261    GT:AD:DP:GQ:PL    0/1:26,10:36:99:306,0,848
1    145535611    rs4970851    T    G    568.83    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=4.084;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.2267;MQ=58.67;MQ0=0;MQRankSum=0.703;QD=16.25;ReadPosRankSum=1.614;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481236    GT:AD:DP:GQ:PL    0/1:14,20:35:99:599,0,318
1    145535921    rs2274617    T    C    1395.90    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8316;MQ=58.78;MQ0=0;MQRankSum=1.7;QD=18.37;ReadPosRankSum=-0.574;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481236    GT:AD:DP:GQ:PL    0/1:30,46:76:99:1426,0,809
1    145538664    rs1109216    A    G    155.94    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.475;QD=7.8;ReadPosRankSum=-1.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369304    GT:AD:DP:GQ:PL    0/1:13,7:20:99:186,0,401
1    145555653    rs6424379    C    T    947.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355594    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:980,75,0
1    145555669    rs185048927    C    T    438.16    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=35;Dels=0.0;FS=5.46;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.054;QD=12.52;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355594    GT:AD:DP:GQ:PL    0/1:18,17:35:99:468,0,450
1    145556986    rs56110740    C    T    519.09    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=33;Dels=0.0;FS=2.21;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.45;QD=15.73;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355594    GT:AD:DP:GQ:PL    0/1:16,17:33:99:549,0,475
1    145558565    rs11801520    C    G    603.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355594    GT:AD:DP:GQ:PL    1/1:0,18:18:51.10:636,51,0
1    145558824    rs17352281    A    C    937.01    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.27;DB;DP=69;Dels=0.0;FS=0.942;HRun=1;HaplotypeScore=1.5767;MQ=58.99;MQ0=0;MQRankSum=-1.47;QD=13.58;ReadPosRankSum=-0.882;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355594    GT:AD:DP:GQ:PL    0/1:34,35:69:99:967,0,1141
1    145561116    rs11578772    G    A    248.50    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.812;DB;DP=29;Dels=0.0;FS=1.485;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.07;QD=8.57;ReadPosRankSum=0.487;SNPEFF_AMINO_ACID_CHANGE=Q177;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145561096_145563099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453670    GT:AD:DP:GQ:PL    0/1:17,12:29:99:278,0,499
1    145562087    rs41315701    G    A    714.46    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=47;Dels=0.0;FS=4.291;HRun=1;HaplotypeScore=1.787;MQ=59.11;MQ0=0;MQRankSum=0.772;QD=15.2;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=R501Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145561096_145563099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453670    GT:AD:DP:GQ:PL    0/1:22,25:47:99:744,0,642
1    145562293    rs11579366    G    C    1364.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.37;MQ0=0;QD=29.03;SNPEFF_AMINO_ACID_CHANGE=E570Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_145561096_145563099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453670    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1397,105,0
1    145567446    rs6673186    C    T    67.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355594    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
1    145585317    rs4128488    A    G    2276.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7987;MQ=59.17;MQ0=0;QD=28.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334513    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2310,190,0
1    145586403    rs1050057    G    T    85.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460879    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
1    145588184    rs2004659    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369298    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    145588536    rs9286836    C    T    272.42    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.063;DB;DP=33;Dels=0.0;FS=11.676;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.674;QD=8.26;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369298    GT:AD:DP:GQ:PL    0/1:21,12:33:99:302,0,665
1    145589491    rs1887804    A    T    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369298    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    145597116    rs9728311    C    T    703.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466003    GT:AD:DP:GQ:PL    1/1:0,26:26:60.11:736,60,0
1    145597417    rs9728345    C    A    132.78    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=10.21;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466003    GT:AD:DP:GQ:PL    0/1:8,5:13:99:163,0,298
1    145598459    rs9729715    T    C    1588.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=28.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466003    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1622,135,0
1    145601861    rs9286837    G    A    1856.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.6;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334163    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1890,141,0
1    145645881    rs115465737    A    C    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF115;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369291    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    145696694    rs2231375    G    A    250.10    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.914;QD=14.71;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235933    GT:AD:DP:GQ:PL    0/1:9,8:17:99:280,0,325
1    145826770    rs34955113    G    A    208.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR89A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313835    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
1    146013577    rs145151412    A    C    1092.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.44;MQ0=20;QD=19.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-94I2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420737    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1126,99,0
1    146019650    .    A    G    32.06    MQFilter40;QDFilter2    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.92;MQ0=11;MQRankSum=0.466;QD=1.46;ReadPosRankSum=-0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-94I2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420737    GT:AD:DP:GQ:PL    0/1:8,14:22:55.03:62,0,55
1    146057292    .    T    C    824.24    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.992;DP=248;DS;Dels=0.0;FS=5.203;HRun=0;HaplotypeScore=0.0;MQ=14.74;MQ0=155;MQRankSum=0.648;QD=3.32;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=N53S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146057275_146057484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339388    GT:AD:DP:GQ:PL    0/1:177,71:248:99:854,0,987
1    146215022    .    T    C    282.65    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.279;MQ=8.92;MQ0=106;MQRankSum=3.873;QD=1.46;ReadPosRankSum=0.174;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    1/1:93,99:193:38.89:316,39,0
1    146215111    .    G    A    2910.02    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.229;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7268;MQ=18.63;MQ0=96;MQRankSum=6.714;QD=11.69;ReadPosRankSum=-2.648;SNPEFF_AMINO_ACID_CHANGE=H84;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146214665_146215318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    1/1:94,155:249:99:2943,278,0
1    146215113    .    G    A    2917.27    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.766;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7268;MQ=19.1;MQ0=94;MQRankSum=6.726;QD=11.67;ReadPosRankSum=-2.11;SNPEFF_AMINO_ACID_CHANGE=H84Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146214665_146215318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    1/1:93,157:250:99:2950,281,0
1    146215138    .    A    G    3403.51    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;DP=227;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2312;MQ=20.78;MQ0=68;MQRankSum=6.607;QD=14.99;ReadPosRankSum=4.704;SNPEFF_AMINO_ACID_CHANGE=F75;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146214665_146215318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    1/1:60,167:227:99:3404,338,0
1    146215189    .    G    C    1184.25    MQFilter40    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.254;DP=250;DS;Dels=0.0;FS=1.811;HRun=0;HaplotypeScore=1.4538;MQ=19.06;MQ0=111;MQRankSum=2.093;QD=4.74;ReadPosRankSum=-0.662;SNPEFF_AMINO_ACID_CHANGE=Y58*;SNPEFF_CODON_CHANGE=taC/taG;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_146214665_146215318;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    0/1:148,102:250:99:1214,0,966
1    146215223    rs72475588    G    C    1364.04    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-4.556;DB;DP=241;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.24;MQ0=149;MQRankSum=4.27;QD=5.66;ReadPosRankSum=-1.714;SNPEFF_AMINO_ACID_CHANGE=P47R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146214665_146215318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    1/1:46,195:241:99:1397,144,0
1    146215232    rs72475587    A    C    1467.91    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.53;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.8867;MQ=12.82;MQ0=159;MQRankSum=4.328;QD=5.92;ReadPosRankSum=-2.498;SNPEFF_AMINO_ACID_CHANGE=F44C;SNPEFF_CODON_CHANGE=tTt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146214665_146215318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    1/1:46,201:248:99:1501,147,0
1    146215276    .    C    T    801.46    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.273;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=9.46;MQ0=197;MQRankSum=2.888;QD=3.21;ReadPosRankSum=1.328;SNPEFF_AMINO_ACID_CHANGE=L29;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146214665_146215318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    1/1:35,214:250:89.89:834,90,0
1    146215376    .    T    C    78.41    MQFilter40;QDFilter2    AB=0.034;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.456;DP=147;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9402;MQ=4.91;MQ0=133;MQRankSum=-1.187;QD=0.53;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436832    GT:AD:DP:GQ:PL    0/1:5,142:147:9.70:108,0,10
1    146216713    .    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.85;MQ0=1;MQRankSum=1.026;QD=7.13;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:3,2:5:6.02:67,6,0
1    146227919    .    GA    G    241.14    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=4;HaplotypeScore=26.7259;IndelType=D;MQ=9.0;MQ0=41;QD=2.51;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:17,79:8:24.07:283,24,0
1    146244609    .    C    T    515.66    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=235;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.55;MQ0=190;MQRankSum=2.86;QD=2.19;ReadPosRankSum=-3.353;SNPEFF_AMINO_ACID_CHANGE=R227H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146244509_146244717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WI2-3658N16.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429672    GT:AD:DP:GQ:PL    1/1:188,47:235:62.79:549,63,0
1    146395722    rs142655742    A    G    80.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=26.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309471    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
1    146398203    .    A    G    868.79    MQFilter40    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.208;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.313;MQ=20.6;MQ0=21;MQRankSum=1.081;QD=7.49;ReadPosRankSum=-0.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309471    GT:AD:DP:GQ:PL    0/1:60,55:116:99:899,0,862
1    146398208    .    A    G    932.43    MQFilter40    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.561;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2997;MQ=21.83;MQ0=17;MQRankSum=0.414;QD=7.52;ReadPosRankSum=-0.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309471    GT:AD:DP:GQ:PL    0/1:65,59:124:99:962,0,1035
1    146399411    .    G    A    89.71    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=15.4;MQ0=5;MQRankSum=1.067;QD=6.9;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309471    GT:AD:DP:GQ:PL    1/1:4,9:13:12.02:122,12,0
1    146409969    .    A    C    58.22    MQFilter40;QDFilter2    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=4.816;DP=209;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4304;MQ=7.86;MQ0=118;MQRankSum=0.117;QD=0.28;ReadPosRankSum=-0.36;SNPEFF_AMINO_ACID_CHANGE=I263L;SNPEFF_CODON_CHANGE=Ata/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146409946_146410048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309471    GT:AD:DP:GQ:PL    0/1:140,69:209:88.21:88,0,149
1    146465443    .    A    C    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.25;MQ0=21;QD=2.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446080    GT:AD:DP:GQ:PL    1/1:21,3:24:9.02:100,9,0
1    146465444    .    G    C    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.25;MQ0=21;QD=2.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446080    GT:AD:DP:GQ:PL    1/1:21,3:24:9.02:100,9,0
1    146465636    .    C    G    415.14    MQFilter40    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.953;DP=19;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=30.36;MQ0=4;MQRankSum=1.444;QD=21.85;ReadPosRankSum=-1.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446080    GT:AD:DP:GQ:PL    0/1:4,15:19:21.85:445,0,22
1    146465784    rs139773774    C    G    754.25    MQFilter40    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.529;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=31.75;MQ0=11;MQRankSum=0.219;QD=6.86;ReadPosRankSum=-2.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446080    GT:AD:DP:GQ:PL    0/1:69,41:110:99:784,0,1472
1    146466146    .    G    T    1352.28    MQFilter40    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=2.679;DP=211;DS;Dels=0.0;FS=1.27;HRun=1;HaplotypeScore=0.0;MQ=20.19;MQ0=94;MQRankSum=1.165;QD=6.41;ReadPosRankSum=-0.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446080    GT:AD:DP:GQ:PL    0/1:126,85:211:99:1382,0,697
1    146466322    rs1284539    A    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.47;MQ0=5;QD=7.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309471    GT:AD:DP:GQ:PL    1/1:0,9:9:9.02:100,9,0
1    146494510    rs11585592    T    C    82.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=20;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=44.59;MQ0=0;MQRankSum=-3.592;QD=4.15;ReadPosRankSum=-0.289;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-325P15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444082    GT:AD:DP:GQ:PL    0/1:8,12:20:99:113,0,250
1    146494511    rs11587748    G    A    91.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=20;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=44.59;MQ0=0;MQRankSum=-3.592;QD=4.58;ReadPosRankSum=-0.372;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-325P15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444082    GT:AD:DP:GQ:PL    0/1:8,12:20:99:122,0,247
1    146495506    rs4245681    T    G    195.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=27.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-325P15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444082    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:229,18,0
1    146495752    rs6663770    C    T    87.64    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.396;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.22;MQ0=1;MQRankSum=-3.203;QD=2.92;ReadPosRankSum=1.158;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-325P15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444082    GT:AD:DP:GQ:PL    0/1:23,7:30:99:118,0,747
1    146662018    rs894467    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254090    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    146672906    rs894469    C    T    489.60    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.242;DB;DP=38;Dels=0.0;FS=20.476;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=12.88;ReadPosRankSum=-0.506;SNPEFF_AMINO_ACID_CHANGE=P337;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146672734_146673086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254090    GT:AD:DP:GQ:PL    0/1:22,16:38:99:520,0,659
1    146680262    rs2354433    A    G    73.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.39;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533174    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:104,0,30
1    146680748    rs28381196    A    G    104.82    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.71;MQ0=0;MQRankSum=-0.731;QD=20.96;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533174    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:135,0,26
1    146685121    rs1530336    G    A    665.19    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.922;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.97;MQ0=0;MQRankSum=-0.505;QD=14.78;ReadPosRankSum=0.645;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478432    GT:AD:DP:GQ:PL    0/1:22,23:45:99:695,0,771
1    146687250    rs1822312    A    T    149.59    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=13.6;ReadPosRankSum=2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254090    GT:AD:DP:GQ:PL    0/1:6,5:11:99:180,0,178
1    146724093    rs1890037    A    G    1012.80    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.785;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.187;QD=19.48;ReadPosRankSum=1.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254086    GT:AD:DP:GQ:PL    0/1:20,32:52:99:1043,0,666
1    146728149    rs12119390    A    G    518.95    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.252;DB;DP=48;Dels=0.0;FS=5.137;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.974;QD=10.81;ReadPosRankSum=-2.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254086    GT:AD:DP:GQ:PL    0/1:26,21:48:99:549,0,915
1    146728162    rs78348136    T    TA    794.41    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=4.436;DB;DP=53;FS=11.888;HRun=1;HaplotypeScore=187.6445;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.287;QD=14.99;ReadPosRankSum=-1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254086    GT:AD:DP:GQ:PL    0/1:31,22:53:99:833,0,1012
1    146739068    rs11239963    T    C    321.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.963;DB;DP=34;Dels=0.0;FS=4.746;HRun=0;HaplotypeScore=2.6206;MQ=59.32;MQ0=0;MQRankSum=-0.551;QD=9.45;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254086    GT:AD:DP:GQ:PL    0/1:17,17:34:99:351,0,586
1    146739277    rs4143738    T    C    120.76    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=10.98;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254086    GT:AD:DP:GQ:PL    0/1:5,6:11:99:151,0,158
1    146740576    rs11576360    G    A    164.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=53.03;MQ0=0;MQRankSum=-0.201;QD=11.77;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254086    GT:AD:DP:GQ:PL    0/1:7,7:14:99:195,0,238
1    146747153    rs6680778    T    C    904.83    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=1.587;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-1.067;QD=12.23;ReadPosRankSum=-0.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254086    GT:AD:DP:GQ:PL    0/1:39,35:74:99:935,0,1216
1    146751782    rs7547279    A    C    955.30    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=4.543;DB;DP=58;Dels=0.0;FS=5.279;HRun=1;HaplotypeScore=2.9515;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=16.47;ReadPosRankSum=-1.455;SNPEFF_AMINO_ACID_CHANGE=I260;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146751699_146751864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361293    GT:AD:DP:GQ:PL    0/1:25,33:58:99:985,0,684
1    146763089    rs10900333    G    A    190.53    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.193;QD=13.61;ReadPosRankSum=1.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361293    GT:AD:DP:GQ:PL    0/1:6,8:14:99:221,0,179
1    146766069    rs71083827    C    CAT    909.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.019;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=97.3518;IndelType=I;MQ=60.28;MQ0=0;MQRankSum=-0.811;QD=26.76;ReadPosRankSum=-2.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361293    GT:AD:DP:GQ:PL    0/1:17,17:34:99:949,0,656
1    146767149    rs4950394    G    T    761    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.706;DB;DP=45;Dels=0.0;FS=1.226;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.207;QD=16.91;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=A604S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_146767112_146767441;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361293    GT:AD:DP:GQ:PL    0/1:18,27:45:99:791,0,440
1    146767320    rs6537    A    G    75.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.85;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467213    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:105,0,25
1    146767353    rs6538    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467213    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    147087721    rs3737843    T    A    353.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.159;DB;DP=28;Dels=0.0;FS=7.067;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-1.555;QD=12.61;ReadPosRankSum=1.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473292    GT:AD:DP:GQ:PL    0/1:16,12:28:99:383,0,470
1    147091972    rs3820129    C    T    446.87    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.679;DB;DP=31;Dels=0.0;FS=1.462;HRun=0;HaplotypeScore=1.9825;MQ=59.25;MQ0=0;MQRankSum=0.084;QD=14.42;ReadPosRankSum=1.381;SNPEFF_AMINO_ACID_CHANGE=P671S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_147090622_147092863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234739    GT:AD:DP:GQ:PL    0/1:13,17:31:99:477,0,454
1    147092352    .    G    T    47.74    QDFilter2    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.684;DP=31;Dels=0.0;FS=36.853;HRun=2;HaplotypeScore=0.0;MQ=49.43;MQ0=0;MQRankSum=-2.271;QD=1.54;ReadPosRankSum=-1.197;SNPEFF_AMINO_ACID_CHANGE=L797F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_147090622_147092863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234739    GT:AD:DP:GQ:PL    0/1:16,15:31:77.74:78,0,594
1    147092881    rs41295835    C    T    422.90    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.349;DB;DP=32;Dels=0.0;FS=2.127;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.969;QD=13.22;ReadPosRankSum=1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234739    GT:AD:DP:GQ:PL    0/1:18,14:32:99:453,0,557
1    147096794    rs867270    A    G    458.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234739    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:491,39,0
1    147096828    rs946902    C    G    311.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234739    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:344,27,0
1    147119273    rs1344    G    A    2711.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=H413;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_147119172_147119368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369238    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2744,199,0
1    147121977    rs6593795    C    T    2159.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=31.76;SNPEFF_AMINO_ACID_CHANGE=V316M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_147121946_147122041;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369238    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2193,160,0
1    147124310    rs2153463    T    G    838.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=27.95;SNPEFF_AMINO_ACID_CHANGE=R275;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_147124252_147124352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369238    GT:AD:DP:GQ:PL    1/1:0,30:30:72.17:872,72,0
1    147131465    rs6674938    T    C    816.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369238    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:850,63,0
1    147131501    rs34675044    A    T    413.67    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=34;Dels=0.0;FS=3.703;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=12.17;ReadPosRankSum=-0.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369238    GT:AD:DP:GQ:PL    0/1:19,15:34:99:444,0,596
1    147131945    rs2275552    T    C    509.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369238    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:543,39,0
1    147230217    rs1692141    T    C    939.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=57.15;MQ0=0;QD=28.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430508    GT:AD:DP:GQ:PL    1/1:0,32:33:78.19:973,78,0
1    147231531    rs1692140    T    C    117.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271348    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
1    147381397    rs66529568    G    GA    142.07    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=14;FS=0.0;HRun=13;HaplotypeScore=117.2961;IndelType=I;MQ=53.48;MQ0=0;MQRankSum=0.898;QD=10.15;ReadPosRankSum=-0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240986    GT:AD:DP:GQ:PL    0/1:5,8:14:0.54:180,0,1
1    147381444    rs1532399    A    C    126.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240986    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
1    147581468    rs145562679    C    T    596.31    MQFilter40    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.903;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=18.03;MQ0=6;MQRankSum=-0.29;QD=9.47;ReadPosRankSum=0.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401006    GT:AD:DP:GQ:PL    0/1:26,37:63:99:626,0,341
1    147595042    .    T    G    42.03    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=2.89;MQ0=149;QD=0.27;SNPEFF_AMINO_ACID_CHANGE=D104A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_147595012_147595084;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369226    GT:AD:DP:GQ:PL    1/1:89,63:153:8.99:74,9,0
1    147595200    .    C    G    90.69    MQFilter40    AC=2;AF=1.00;AN=2;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.96;MQ0=11;QD=5.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NBPF24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470042    GT:AD:DP:GQ:PL    1/1:2,16:18:14.98:123,15,0
1    147851865    rs139448148    G    A    55.27    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.81;MQ0=0;MQRankSum=-1.38;QD=9.21;ReadPosRankSum=1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-495P10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381475    GT:AD:DP:GQ:PL    0/1:2,4:6:57.46:85,0,57
1    147851954    rs77558331    C    T    58.27    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.0;MQ=31.19;MQ0=0;MQRankSum=-0.727;QD=11.65;ReadPosRankSum=-0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-495P10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381475    GT:AD:DP:GQ:PL    0/1:2,3:5:30.97:88,0,31
1    148004396    rs3961379    C    A    81.39    MQFilter40    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.48;MQ0=11;MQRankSum=-1.672;QD=2.09;ReadPosRankSum=-0.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:28,11:39:99:111,0,471
1    148004402    rs3961380    G    A    68.04    MQFilter40;QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=0.275;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.06;MQ0=10;MQRankSum=-2.345;QD=1.66;ReadPosRankSum=-0.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:31,10:41:98.03:98,0,541
1    148004407    .    G    C    31.60    MQFilter40;QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=26.89;MQ0=10;MQRankSum=-2.179;QD=0.75;ReadPosRankSum=0.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:33,9:42:61.59:62,0,620
1    148004472    rs3961381    G    A    99.23    MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=98;Dels=0.0;FS=4.746;HRun=0;HaplotypeScore=2.651;MQ=33.42;MQ0=16;MQRankSum=-4.682;QD=1.01;ReadPosRankSum=-0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:68,30:98:99:129,0,1873
1    148004475    .    C    G    139.25    MQFilter40;QDFilter2    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.698;DP=105;Dels=0.0;FS=4.657;HRun=0;HaplotypeScore=3.4831;MQ=34.4;MQ0=16;MQRankSum=-5.924;QD=1.33;ReadPosRankSum=-0.294;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:71,34:105:99:169,0,1990
1    148004732    rs77570381    A    C    100.33    QDFilter2    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=5.404;DB;DP=137;DS;Dels=0.0;FS=11.684;HRun=0;HaplotypeScore=1.9092;MQ=42.13;MQ0=16;MQRankSum=-7.713;QD=0.73;ReadPosRankSum=2.489;SNPEFF_AMINO_ACID_CHANGE=I209R;SNPEFF_CODON_CHANGE=aTa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148004099_148004791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369368    GT:AD:DP:GQ:PL    0/1:89,48:137:99:130,0,2852
1    148004733    rs78149412    T    C    2832.40    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=143;DS;Dels=0.0;FS=14.036;HRun=0;HaplotypeScore=2.4876;MQ=42.03;MQ0=16;MQRankSum=7.62;QD=19.81;ReadPosRankSum=-2.239;SNPEFF_AMINO_ACID_CHANGE=I209V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148004099_148004791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369368    GT:AD:DP:GQ:PL    0/1:50,93:143:99:2862,0,168
1    148004866    rs75875945    T    A    38.61    QDFilter2    AB=0.915;AC=1;AF=0.50;AN=2;BaseQRankSum=2.325;DB;DP=142;Dels=0.0;FS=4.609;HRun=2;HaplotypeScore=4.1773;MQ=42.41;MQ0=27;MQRankSum=-2.705;QD=0.27;ReadPosRankSum=-0.832;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:130,12:142:68.60:69,0,2851
1    148004883    rs148664595    T    A    587.58    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.94;DB;DP=137;Dels=0.0;FS=9.927;HRun=1;HaplotypeScore=0.734;MQ=40.93;MQ0=28;MQRankSum=-6.494;QD=4.29;ReadPosRankSum=3.574;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:73,64:137:99:618,0,2083
1    148004890    .    GA    G    598.80    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=7.086;DP=85;FS=3.724;HRun=5;HaplotypeScore=499.4559;IndelType=D;MQ=40.21;MQ0=29;MQRankSum=-6.196;QD=4.57;ReadPosRankSum=2.989;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:74,57:85:99:638,0,1999
1    148004927    .    T    A    596.75    MQFilter40    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.118;DP=83;Dels=0.0;FS=6.047;HRun=10;HaplotypeScore=1.5774;MQ=39.52;MQ0=11;MQRankSum=-5.476;QD=7.19;ReadPosRankSum=-0.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:36,47:83:99:627,0,1031
1    148004953    .    C    A    75.49    MQFilter40;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.221;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.642;MQ=37.05;MQ0=6;MQRankSum=-2.794;QD=1.57;ReadPosRankSum=-2.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:32,16:48:99:105,0,761
1    148008547    .    C    A    805.18    MQFilter40    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.486;DP=225;Dels=0.0;FS=11.466;HRun=1;HaplotypeScore=1.2434;MQ=23.26;MQ0=1;MQRankSum=5.181;QD=3.56;ReadPosRankSum=1.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:189,34:225:99:835,0,1681
1    148009353    .    C    G    201    MQFilter40;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DP=250;DS;Dels=0.0;FS=2.945;HRun=0;HaplotypeScore=11.5505;MQ=19.68;MQ0=130;MQRankSum=0.077;QD=0.8;ReadPosRankSum=-1.393;SNPEFF_AMINO_ACID_CHANGE=D242H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148009327_148009516;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:222,27:250:99:231,0,2392
1    148009510    rs56160124    G    A    2088.85    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.574;DB;DP=250;DS;Dels=0.0;FS=9.553;HRun=0;HaplotypeScore=3.389;MQ=52.87;MQ0=1;MQRankSum=0.812;QD=8.36;ReadPosRankSum=1.61;SNPEFF_AMINO_ACID_CHANGE=S189;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148009327_148009516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434489    GT:AD:DP:GQ:PL    0/1:169,81:250:99:2119,0,5457
1    148009715    rs10624532    G    GGA    227.94    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.754;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=103.9719;IndelType=I;MQ=47.24;MQ0=4;MQRankSum=-2.693;QD=5.56;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:27,13:34:99:267,0,537
1    148010217    .    A    G    104.71    MQFilter40;QDFilter2    AB=0.944;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=8.13;MQ0=216;MQRankSum=0.625;QD=0.42;ReadPosRankSum=-0.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:236,14:250:99:135,0,383
1    148011191    .    T    C    49.78    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.935;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.159;DP=108;Dels=0.0;FS=2.5;HRun=0;HaplotypeScore=14.9079;MQ=19.85;MQ0=6;MQRankSum=1.866;QD=0.46;ReadPosRankSum=-1.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:101,7:108:79.78:80,0,833
1    148011262    .    C    G    402.30    MQFilter40    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.09;DP=42;Dels=0.0;FS=1.779;HRun=0;HaplotypeScore=0.0;MQ=33.71;MQ0=3;MQRankSum=-0.581;QD=9.58;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:19,23:42:99:432,0,431
1    148012872    .    GAC    G    220.35    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DP=18;FS=4.359;HRun=0;HaplotypeScore=106.4009;IndelType=D;MQ=27.17;MQ0=10;MQRankSum=-3.421;QD=7.87;ReadPosRankSum=-1.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:20,8:18:99:259,0,210
1    148017256    rs4067359    G    A    32.97    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=8.83;MQ0=7;MQRankSum=0.736;QD=2.54;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    1/1:7,6:13:8.94:65,9,0
1    148023403    .    G    A    171.66    MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=13.83;MQ0=16;MQRankSum=1.064;QD=4.64;ReadPosRankSum=-1.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:25,12:37:99:202,0,127
1    148023489    rs150361541    C    T    74.26    MQFilter40;QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.37;MQ0=88;MQRankSum=0.339;QD=0.62;ReadPosRankSum=-0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:102,17:119:99:104,0,334
1    148023494    rs75500016    G    A    55.56    MQFilter40;QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=3.185;DB;DP=129;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=8.65;MQ0=100;MQRankSum=-0.28;QD=0.43;ReadPosRankSum=0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:113,16:129:85.56:86,0,315
1    148023502    .    GT    G    107.94    QDFilter2    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=3.377;DP=20;FS=0.0;HRun=5;HaplotypeScore=154.3171;IndelType=D;MQ=7.64;MQ0=120;MQRankSum=-1.535;QD=0.74;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:131,15:20:99:147,0,472
1    148023509    rs140737308    G    A    235.58    MQFilter40;QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=166;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.799;MQ=7.05;MQ0=140;MQRankSum=1.177;QD=1.42;ReadPosRankSum=1.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:130,36:166:62.62:266,0,63
1    148025606    rs78327296    C    T    524.15    MQFilter40    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.202;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=29.25;MQ0=5;MQRankSum=-5.276;QD=10.28;ReadPosRankSum=2.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369219    GT:AD:DP:GQ:PL    0/1:16,34:51:99:554,0,457
1    148252164    rs61812475    A    C    411.04    QDFilter2    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=227;DS;Dels=0.0;FS=6.815;HRun=0;HaplotypeScore=6.3501;MQ=44.39;MQ0=11;MQRankSum=-10.089;QD=1.81;ReadPosRankSum=2.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457491    GT:AD:DP:GQ:PL    0/1:161,65:227:99:441,0,5011
1    148343477    rs61809885    C    T    309.80    MQFilter40    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=1.687;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7657;MQ=20.14;MQ0=30;MQRankSum=1.061;QD=4.19;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369188    GT:AD:DP:GQ:PL    0/1:53,21:74:99:340,0,429
1    148344491    .    T    A    124.71    MQFilter40;QDFilter2    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.879;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.56;MQ0=20;MQRankSum=1.786;QD=1.13;ReadPosRankSum=-1.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369188    GT:AD:DP:GQ:PL    0/1:92,18:110:99:155,0,1141
1    148344521    rs1880501    C    T    416.03    HaplotypeScoreFilter13;MQFilter40    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.039;DB;DP=188;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.5553;MQ=25.05;MQ0=25;MQRankSum=1.655;QD=2.21;ReadPosRankSum=0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369188    GT:AD:DP:GQ:PL    0/1:151,37:188:99:446,0,2113
1    148344615    .    G    GC    174.41    QDFilter2    AB=0.926;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.565;DP=188;DS;FS=15.073;HRun=2;HaplotypeScore=989.3429;IndelType=I;MQ=29.27;MQ0=36;MQRankSum=-0.328;QD=0.7;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369188    GT:AD:DP:GQ:PL    0/1:230,20:188:99:213,0,5177
1    148344624    rs75650621    T    C    1866.46    HaplotypeScoreFilter13;MQFilter40    AB=0.376;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=246;DS;Dels=0.0;FS=2.258;HRun=5;HaplotypeScore=49.8514;MQ=27.19;MQ0=43;MQRankSum=-4.945;QD=7.59;ReadPosRankSum=3.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369188    GT:AD:DP:GQ:PL    0/1:79,131:246:99:1896,0,1578
1    148344741    rs61809891    G    C    410.91    MQFilter40;QDFilter2    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.856;DB;DP=214;DS;Dels=0.0;FS=30.614;HRun=0;HaplotypeScore=2.7114;MQ=27.95;MQ0=31;MQRankSum=-7.368;QD=1.92;ReadPosRankSum=0.469;SNPEFF_AMINO_ACID_CHANGE=N59K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148344640_148344742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369188    GT:AD:DP:GQ:PL    0/1:115,98:214:99:441,0,3108
1    148349431    rs67020224    T    TG    244.44    PASS    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=45;FS=2.694;HRun=6;HaplotypeScore=148.2919;IndelType=I;MQ=18.48;MQ0=59;MQRankSum=-0.242;QD=2.07;ReadPosRankSum=1.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369188    GT:AD:DP:GQ:PL    0/1:100,18:45:99:283,0,767
1    148349499    .    C    T    121.01    MQFilter40;QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DP=86;Dels=0.0;FS=16.528;HRun=2;HaplotypeScore=0.0;MQ=17.29;MQ0=49;MQRankSum=0.402;QD=1.41;ReadPosRankSum=-0.11;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369188    GT:AD:DP:GQ:PL    0/1:75,11:86:99:151,0,628
1    148644408    .    A    G    35.74    MQFilter40;QDFilter2    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.438;DP=169;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.51;MQ0=73;MQRankSum=-1.682;QD=0.21;ReadPosRankSum=1.188;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-666A1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427485    GT:AD:DP:GQ:PL    0/1:100,69:169:65.73:66,0,204
1    148751468    .    C    G    57.30    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.38;MQ0=1;QD=14.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    1/1:1,3:4:8.99:89,9,0
1    148754569    .    A    G    41.60    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.46;MQ0=0;MQRankSum=1.312;QD=2.97;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    0/1:9,5:14:68.73:72,0,69
1    148754588    rs144242942    C    G    32.33    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4964;MQ=20.22;MQ0=5;MQRankSum=1.754;QD=2.69;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    0/1:6,6:12:13.67:62,0,14
1    148756363    .    A    G    212.10    MQFilter40    AC=2;AF=1.00;AN=2;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=10.13;MQ0=44;QD=2.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    1/1:13,61:75:26.96:245,27,0
1    148756365    .    T    G    92.48    MQFilter40;QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=10.31;MQ0=45;MQRankSum=2.145;QD=1.2;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    0/1:63,14:77:99:122,0,101
1    148756384    .    G    A    57.77    MQFilter40;QDFilter2    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.96;MQ0=75;MQRankSum=-2.863;QD=0.49;ReadPosRankSum=2.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    0/1:75,43:118:87.77:88,0,395
1    148756397    .    C    T    259.90    MQFilter40;QDFilter2    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DP=160;Dels=0.0;FS=10.0;HRun=1;HaplotypeScore=0.7887;MQ=11.61;MQ0=101;MQRankSum=-2.307;QD=1.61;ReadPosRankSum=-0.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    0/1:104,56:160:99:290,0,456
1    148756432    rs141389420    C    A    533.24    MQFilter40    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=229;Dels=0.0;FS=9.102;HRun=0;HaplotypeScore=0.9983;MQ=13.54;MQ0=129;MQRankSum=-3.09;QD=2.33;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    0/1:147,82:229:99:563,0,802
1    148756448    .    G    A    825.49    MQFilter40    AB=0.498;AC=1;AF=0.50;AN=2;BaseQRankSum=1.869;DP=231;Dels=0.0;FS=4.519;HRun=0;HaplotypeScore=1.9966;MQ=13.73;MQ0=127;MQRankSum=3.412;QD=3.57;ReadPosRankSum=-3.015;SNPEFF_AMINO_ACID_CHANGE=G593S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148756441_148758311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    0/1:115,116:231:99:855,0,571
1    148756499    .    A    G    1741.44    MQFilter40    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DP=210;Dels=0.0;FS=4.175;HRun=1;HaplotypeScore=1.4679;MQ=19.95;MQ0=90;MQRankSum=5.434;QD=8.29;ReadPosRankSum=1.075;SNPEFF_AMINO_ACID_CHANGE=R610G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148756441_148758311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    0/1:89,121:210:99:1771,0,145
1    148756607    .    G    T    866.56    MQFilter40    AC=2;AF=1.00;AN=2;DP=156;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.75;MQ0=102;QD=5.55;SNPEFF_AMINO_ACID_CHANGE=V646L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148756441_148758311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    1/1:62,94:156:96.03:900,96,0
1    148756648    .    C    T    445.33    MQFilter40    AC=2;AF=1.00;AN=2;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.33;MQ0=118;QD=3.03;SNPEFF_AMINO_ACID_CHANGE=H659;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148756441_148758311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    1/1:104,43:147:45.09:478,45,0
1    148756664    .    G    T    182.37    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.12;MQ0=123;QD=1.3;SNPEFF_AMINO_ACID_CHANGE=G665*;SNPEFF_CODON_CHANGE=Gga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_148756441_148758311;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    1/1:113,27:140:24.01:215,24,0
1    148756665    .    G    T    182.37    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.12;MQ0=123;QD=1.3;SNPEFF_AMINO_ACID_CHANGE=G665V;SNPEFF_CODON_CHANGE=gGa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_148756441_148758311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    1/1:113,27:140:24.01:215,24,0
1    148756684    .    A    G    167.73    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.45;MQ0=119;QD=1.25;SNPEFF_AMINO_ACID_CHANGE=*671;SNPEFF_CODON_CHANGE=taA/taG;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_1_148756441_148758311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    1/1:111,23:134:18.05:201,18,0
1    148756690    .    T    C    167.73    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=131;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=6.77;MQ0=120;QD=1.28;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBPF16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254372    GT:AD:DP:GQ:PL    1/1:105,26:131:18.05:201,18,0
1    148873483    .    C    T    196.54    MQFilter40;QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.947;DP=247;DS;Dels=0.0;FS=3.084;HRun=0;HaplotypeScore=0.5784;MQ=21.48;MQ0=88;MQRankSum=-1.101;QD=0.8;ReadPosRankSum=2.309;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:209,38:247:99:227,0,2784
1    148873574    rs74545317    G    T    367.38    HaplotypeScoreFilter13;MQFilter40    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.663;DB;DP=147;DS;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=17.3302;MQ=29.4;MQ0=32;MQRankSum=0.506;QD=2.5;ReadPosRankSum=0.182;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:119,28:147:99:397,0,2157
1    148876400    rs421825    G    A    123.52    MQFilter40;QDFilter2    AB=0.897;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.66;DB;DP=225;Dels=0.0;FS=1.505;HRun=0;HaplotypeScore=0.9578;MQ=17.8;MQ0=149;MQRankSum=0.441;QD=0.55;ReadPosRankSum=-1.576;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:201,23:225:99:154,0,1465
1    148876411    rs446702    G    T    252.88    MQFilter40;QDFilter2    AB=0.891;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=238;Dels=0.0;FS=7.852;HRun=0;HaplotypeScore=0.0;MQ=20.04;MQ0=148;MQRankSum=1.218;QD=1.06;ReadPosRankSum=-2.488;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:212,26:238:99:283,0,1595
1    148876536    rs57112850    CTT    C    81.76    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.556;DB;DP=24;FS=0.0;HRun=17;HaplotypeScore=132.3621;IndelType=D;MQ=32.71;MQ0=5;MQRankSum=-1.324;QD=2.73;ReadPosRankSum=1.791;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:21,6:24:99:121,0,212
1    148882326    .    C    A    333.71    MQFilter40;QDFilter2    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.241;DP=239;Dels=0.0;FS=0.897;HRun=0;HaplotypeScore=1.6671;MQ=17.36;MQ0=90;MQRankSum=1.061;QD=1.4;ReadPosRankSum=-1.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:196,43:239:99:364,0,1559
1    148888276    rs71270655    CA    C    185.26    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.277;DB;DP=34;FS=5.452;HRun=13;HaplotypeScore=151.8082;IndelType=D;MQ=38.45;MQ0=8;MQRankSum=-1.741;QD=4.41;ReadPosRankSum=0.627;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:27,12:34:99:224,0,222
1    148888289    .    A    T    38.34    QDFilter2    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.401;DP=36;Dels=0.0;FS=3.772;HRun=0;HaplotypeScore=3.9325;MQ=41.63;MQ0=1;MQRankSum=1.203;QD=1.06;ReadPosRankSum=0.401;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:31,4:36:68.33:68,0,394
1    148889551    rs145638823    TAA    T    188.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=59.6012;IndelType=D;MQ=42.64;MQ0=0;MQRankSum=0.312;QD=13.48;ReadPosRankSum=0.811;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:7,7:13:99:228,0,250
1    148889699    rs10157381    A    G    185.03    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=31;Dels=0.0;FS=4.682;HRun=0;HaplotypeScore=0.0;MQ=32.58;MQ0=1;MQRankSum=-0.047;QD=5.97;ReadPosRankSum=0.188;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:18,13:31:99:215,0,450
1    148890173    rs170528    A    C    2638.26    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=25.5328;MQ=38.34;MQ0=17;QD=25.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    1/1:0,102:102:99:2671,220,0
1    148890177    .    AT    A    354.79    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DP=88;FS=3.11;HRun=11;HaplotypeScore=573.0147;IndelType=D;MQ=39.53;MQ0=15;MQRankSum=-2.078;QD=3.29;ReadPosRankSum=-2.008;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:68,30:88:99:394,0,1526
1    148890273    .    A    G    305.12    MQFilter40;QDFilter2    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=4.616;DP=191;Dels=0.0;FS=11.969;HRun=1;HaplotypeScore=1.2434;MQ=29.12;MQ0=43;MQRankSum=-0.018;QD=1.6;ReadPosRankSum=-1.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:140,51:191:99:335,0,2754
1    148891675    rs148986249    A    G    366.41    MQFilter40    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=101;Dels=0.0;FS=3.626;HRun=0;HaplotypeScore=4.3458;MQ=31.0;MQ0=5;MQRankSum=-6.835;QD=3.63;ReadPosRankSum=1.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:45,56:101:99:396,0,1351
1    148891790    rs151025    T    A    87.19    MQFilter40    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=0.942;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.75;MQ0=3;MQRankSum=1.211;QD=2.72;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-763B22.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444424    GT:AD:DP:GQ:PL    0/1:26,6:32:99:117,0,362
1    148902483    rs55993601    G    A    653.41    MQFilter40    AB=0.233;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=32.25;MQ0=5;MQRankSum=-3.166;QD=15.2;ReadPosRankSum=-0.017;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:10,33:43:99:683,0,275
1    148902522    rs77238322    G    A    254.23    MQFilter40    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=63;Dels=0.0;FS=4.629;HRun=0;HaplotypeScore=0.0;MQ=34.35;MQ0=0;MQRankSum=-0.706;QD=4.04;ReadPosRankSum=-0.318;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:44,19:63:99:284,0,1211
1    148902590    .    A    G    143.63    MQFilter40;QDFilter2    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DP=74;Dels=0.0;FS=1.354;HRun=0;HaplotypeScore=0.734;MQ=23.97;MQ0=26;MQRankSum=-0.534;QD=1.94;ReadPosRankSum=-1.972;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:53,21:74:99:174,0,839
1    148902591    .    C    G    154.12    MQFilter40    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.5;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=23.92;MQ0=26;MQRankSum=-0.198;QD=2.05;ReadPosRankSum=-1.151;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:55,19:75:99:184,0,921
1    148902833    .    C    G    66.39    MQFilter40;QDFilter2    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.396;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.13;MQ0=31;MQRankSum=0.099;QD=1.25;ReadPosRankSum=0.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:35,18:53:96.38:96,0,127
1    148902979    rs151092652    C    T    1043.60    MQFilter40    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=198;Dels=0.0;FS=10.747;HRun=0;HaplotypeScore=3.5124;MQ=27.77;MQ0=33;MQRankSum=-0.681;QD=5.27;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:130,68:198:99:1074,0,2286
1    148903000    .    T    C    77.39    MQFilter40;QDFilter2    AB=0.893;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DP=224;Dels=0.0;FS=4.69;HRun=0;HaplotypeScore=1.86;MQ=30.58;MQ0=19;MQRankSum=-0.002;QD=0.35;ReadPosRankSum=0.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:200,24:224:99:107,0,4145
1    148903047    rs145813307    G    A    1291.81    MQFilter40    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.261;DB;DP=216;Dels=0.0;FS=10.315;HRun=1;HaplotypeScore=4.1787;MQ=33.19;MQ0=6;MQRankSum=-0.163;QD=5.98;ReadPosRankSum=0.522;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:143,73:216:99:1322,0,3244
1    148903507    rs142037290    A    G    720.14    MQFilter40    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=138;Dels=0.0;FS=18.567;HRun=1;HaplotypeScore=1.9941;MQ=36.54;MQ0=34;MQRankSum=-5.621;QD=5.22;ReadPosRankSum=-1.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:70,68:138:99:750,0,2198
1    148903547    rs76622879    C    T    267.88    MQFilter40;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=1.18;DB;DP=216;Dels=0.0;FS=5.061;HRun=0;HaplotypeScore=1.6809;MQ=37.66;MQ0=18;MQRankSum=-3.223;QD=1.24;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:181,35:216:99:298,0,4652
1    148903577    rs79177226    A    G    309.12    MQFilter40;QDFilter2    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=3.5;DB;DP=249;DS;Dels=0.0;FS=9.086;HRun=0;HaplotypeScore=5.2382;MQ=39.93;MQ0=16;MQRankSum=-4.804;QD=1.24;ReadPosRankSum=1.904;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:205,44:249:99:339,0,5257
1    148903616    rs77931718    G    A    61.90    QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=1.003;DB;DP=224;DS;Dels=0.0;FS=4.955;HRun=0;HaplotypeScore=3.3572;MQ=41.98;MQ0=12;MQRankSum=-4.486;QD=0.28;ReadPosRankSum=-1.756;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:184,40:224:91.90:92,0,4644
1    148903617    rs80113955    G    A    76.73    QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=217;DS;Dels=0.0;FS=4.991;HRun=0;HaplotypeScore=3.3572;MQ=42.31;MQ0=12;MQRankSum=-4.394;QD=0.35;ReadPosRankSum=-1.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:179,38:217:99:107,0,4749
1    148903639    rs74758496    A    G    290.23    QDFilter2    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=1.985;DB;DP=164;DS;Dels=0.0;FS=1.885;HRun=1;HaplotypeScore=3.5673;MQ=44.79;MQ0=22;MQRankSum=-7.853;QD=1.77;ReadPosRankSum=0.958;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:104,60:164:99:320,0,3314
1    148903758    rs61786300    A    G    325.64    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.501;DB;DP=100;Dels=0.0;FS=2.61;HRun=0;HaplotypeScore=0.9983;MQ=35.79;MQ0=12;MQRankSum=-1.701;QD=3.26;ReadPosRankSum=-0.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:75,25:100:99:356,0,1560
1    148903864    .    G    C    51.71    MQFilter40    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=19.42;MQ0=2;MQRankSum=0.896;QD=3.98;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-14N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309892    GT:AD:DP:GQ:PL    0/1:9,4:13:65.78:82,0,66
1    148932848    rs13653    A    G    395.17    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=180;DS;Dels=0.0;FS=5.711;HRun=0;HaplotypeScore=12.8262;MQ=45.94;MQ0=13;MQRankSum=-7.083;QD=2.2;ReadPosRankSum=1.659;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-14N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294715    GT:AD:DP:GQ:PL    0/1:130,48:180:99:425,0,4116
1    148932965    .    T    C    84.35    QDFilter2    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.839;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.301;MQ=49.69;MQ0=3;MQRankSum=-5.283;QD=1.1;ReadPosRankSum=-0.374;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-14N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420597    GT:AD:DP:GQ:PL    0/1:58,19:77:99:114,0,1870
1    148933287    rs2659307    G    C    606.69    MQFilter40    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.498;DB;DP=55;Dels=0.0;FS=27.699;HRun=3;HaplotypeScore=0.0;MQ=34.35;MQ0=3;MQRankSum=-2.535;QD=11.03;ReadPosRankSum=-0.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-14N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420597    GT:AD:DP:GQ:PL    0/1:26,29:55:99:637,0,584
1    148942545    .    T    C    137.73    MQFilter40;QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=3.372;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.79;MQ0=82;MQRankSum=-0.558;QD=1.26;ReadPosRankSum=-0.823;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-14N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452399    GT:AD:DP:GQ:PL    0/1:85,24:109:99:168,0,518
1    148951075    rs228171    C    T    100.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=42.51;MQ0=0;MQRankSum=0.244;QD=8.36;ReadPosRankSum=-0.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-14N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452399    GT:AD:DP:GQ:PL    0/1:7,5:12:99:130,0,159
1    148951166    rs228170    A    C    552.38    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=4.266;DB;DP=44;Dels=0.0;FS=3.716;HRun=0;HaplotypeScore=0.0;MQ=47.95;MQ0=0;MQRankSum=2.338;QD=12.55;ReadPosRankSum=-0.964;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-14N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452399    GT:AD:DP:GQ:PL    0/1:27,17:44:99:582,0,779
1    148951207    rs228169    G    C    1007.12    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.455;DB;DP=78;Dels=0.0;FS=2.562;HRun=0;HaplotypeScore=0.0;MQ=47.61;MQ0=1;MQRankSum=0.883;QD=12.91;ReadPosRankSum=1.363;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-14N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452399    GT:AD:DP:GQ:PL    0/1:42,36:78:99:1037,0,1389
1    149065488    rs5006229    C    A    53.01    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=22;Dels=0.0;FS=5.035;HRun=1;HaplotypeScore=0.0;MQ=53.8;MQ0=2;MQRankSum=-3.05;QD=2.41;ReadPosRankSum=-1.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-744H18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449715    GT:AD:DP:GQ:PL    0/1:16,6:22:83:83,0,560
1    149065494    rs5006230    C    T    37.60    QDFilter2    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.237;DB;DP=21;Dels=0.0;FS=5.035;HRun=0;HaplotypeScore=0.0;MQ=54.93;MQ0=2;MQRankSum=-2.725;QD=1.79;ReadPosRankSum=0.355;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-744H18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449715    GT:AD:DP:GQ:PL    0/1:16,5:21:67.59:68,0,564
1    149065953    rs1849364    C    T    40.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-744H18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449715    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:71,0,23
1    149290301    rs58203606    T    C    126.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.7;MQ0=2;QD=21.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-403I13.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424684    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:159,12,0
1    149290370    rs11485742    G    A    143.28    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=37.43;MQ0=0;MQRankSum=0.869;QD=11.94;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-403I13.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424684    GT:AD:DP:GQ:PL    0/1:6,6:12:99:173,0,131
1    149290383    rs11485743    G    T    109.66    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.652;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=32.84;MQ0=1;MQRankSum=0.648;QD=6.45;ReadPosRankSum=-0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-403I13.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424684    GT:AD:DP:GQ:PL    0/1:10,7:17:99:140,0,135
1    149576385    .    G    A    39.24    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.91;MQ0=1;QD=9.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-277L2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447883    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:70,6,0
1    149576390    .    C    A    115.21    MQFilter40    AC=2;AF=1.00;AN=2;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.45;MQ0=1;QD=19.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-277L2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447883    GT:AD:DP:GQ:PL    1/1:1,5:6:12.04:148,12,0
1    149576483    .    G    A    35.44    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=18.18;MQ0=12;MQRankSum=0.727;QD=2.08;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-277L2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447883    GT:AD:DP:GQ:PL    1/1:10,7:17:6.01:67,6,0
1    149676075    rs139224032    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.5;MQ0=6;QD=4.45;SNPEFF_AMINO_ACID_CHANGE=G2;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_149675978_149676609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL358813.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369173    GT:AD:DP:GQ:PL    1/1:0,7:8:6.02:67,6,0
1    149676264    .    T    C    229.14    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=2.299;DP=87;Dels=0.0;FS=7.724;HRun=0;HaplotypeScore=1.6281;MQ=40.19;MQ0=6;MQRankSum=-3.67;QD=2.63;ReadPosRankSum=-1.826;SNPEFF_AMINO_ACID_CHANGE=S65;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_149675978_149676609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL358813.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369173    GT:AD:DP:GQ:PL    0/1:63,24:87:99:259,0,1777
1    149676401    rs146138154    A    G    420.10    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.135;DB;DP=64;Dels=0.0;FS=23.306;HRun=1;HaplotypeScore=1.9367;MQ=33.6;MQ0=9;MQRankSum=-1.03;QD=6.56;ReadPosRankSum=-2.139;SNPEFF_AMINO_ACID_CHANGE=Q111R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_149675978_149676609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL358813.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369173    GT:AD:DP:GQ:PL    0/1:32,32:64:99:450,0,856
1    149676508    rs142083788    A    T    34.67    MQFilter40;QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=2.101;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.5;MQ0=64;MQRankSum=-0.7;QD=0.4;ReadPosRankSum=1.438;SNPEFF_AMINO_ACID_CHANGE=T147S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_149675978_149676609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL358813.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369173    GT:AD:DP:GQ:PL    0/1:77,9:86:64.66:65,0,251
1    149885583    rs577935    A    G    71.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=8.93;ReadPosRankSum=-1.638;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_149884771_149885739;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369145    GT:AD:DP:GQ:PL    0/1:4,4:8:99:101,0,146
1    149906413    rs11205303    T    C    442.15    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.034;DB;DP=40;Dels=0.0;FS=9.689;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=11.05;ReadPosRankSum=0.438;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_1_149906341_149906419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTMR11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000405710    GT:AD:DP:GQ:PL    0/1:23,17:40:99:472,0,697
1    149936270    .    C    T    887.59    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.244;DP=60;Dels=0.0;FS=2.536;HRun=0;HaplotypeScore=2.9309;MQ=60.0;MQ0=0;MQRankSum=0.149;QD=14.79;ReadPosRankSum=-0.253;SNPEFF_AMINO_ACID_CHANGE=M203I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_149936147_149936274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUD7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369135    GT:AD:DP:GQ:PL    0/1:27,33:60:99:918,0,805
1    150048871    rs72692896    A    T    158.84    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.362;QD=8.82;ReadPosRankSum=-0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369128    GT:AD:DP:GQ:PL    0/1:11,7:18:99:189,0,374
1    150049934    rs72692897    A    G    80.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=8.01;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460366    GT:AD:DP:GQ:PL    0/1:6,4:10:99:110,0,201
1    150055021    rs3736082    G    A    116.85    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.37;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369128    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:147,0,28
1    150122493    rs4553237    T    C    295.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=26.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369130    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:328,27,0
1    150128006    rs11205334    G    A    244.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492304    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
1    150128425    rs1545762    C    T    720.92    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=3.407;DB;DP=45;Dels=0.0;FS=1.747;HRun=0;HaplotypeScore=0.8321;MQ=58.45;MQ0=0;MQRankSum=0.728;QD=16.02;ReadPosRankSum=-1.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492304    GT:AD:DP:GQ:PL    0/1:21,23:45:99:751,0,591
1    150129267    rs10749675    G    A    912.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492304    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:946,72,0
1    150129335    rs3208509    G    A    227.30    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=17.48;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492304    GT:AD:DP:GQ:PL    0/1:5,8:13:99:257,0,151
1    150130982    .    G    GC    1970.85    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=7.19;DP=99;FS=4.613;HRun=0;HaplotypeScore=463.5105;IndelType=I;MQ=60.03;MQ0=0;MQRankSum=0.844;QD=19.91;ReadPosRankSum=-0.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477309    GT:AD:DP:GQ:PL    0/1:44,55:99:99:2010,0,1448
1    150234657    rs34714364    G    T    1037.94    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.867;DB;DP=93;Dels=0.0;FS=3.07;HRun=0;HaplotypeScore=3.6491;MQ=59.45;MQ0=0;MQRankSum=0.91;QD=11.16;ReadPosRankSum=-0.36;SNPEFF_AMINO_ACID_CHANGE=G119;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150234557_150234699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369111    GT:AD:DP:GQ:PL    0/1:50,43:93:99:1068,0,1594
1    150236313    .    TC    T    51.74    QDFilter2    AB=0.934;AC=1;AF=0.50;AN=2;BaseQRankSum=3.444;DP=71;FS=3.08;HRun=1;HaplotypeScore=822.7172;IndelType=D;MQ=44.44;MQ0=0;MQRankSum=-3.001;QD=0.73;ReadPosRankSum=-2.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APH1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236017    GT:AD:DP:GQ:PL    0/1:66,5:71:90.77:91,0,276
1    150249101    rs11205354    C    A    359.15    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.532;QD=17.96;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369098    GT:AD:DP:GQ:PL    0/1:9,11:20:99:389,0,303
1    150255587    rs2147324    T    C    549.67    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=40;Dels=0.0;FS=2.052;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.93;QD=13.74;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369098    GT:AD:DP:GQ:PL    0/1:23,17:40:99:580,0,762
1    150258838    rs1122967    C    G    1135.48    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.68;DB;DP=87;Dels=0.0;FS=8.425;HRun=0;HaplotypeScore=3.3879;MQ=60.0;MQ0=0;MQRankSum=-0.723;QD=13.05;ReadPosRankSum=-0.481;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469255    GT:AD:DP:GQ:PL    0/1:47,40:87:99:1165,0,1563
1    150259400    rs9126    A    C    434.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.183;QD=12.08;ReadPosRankSum=1.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417398    GT:AD:DP:GQ:PL    0/1:21,15:36:99:465,0,621
1    150280801    rs8006    G    C    42.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL138795.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366377    GT:AD:DP:GQ:PL    0/1:2,2:4:72.20:73,0,72
1    150297334    rs75011188    CT    C    144.03    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=64;FS=2.431;HRun=16;HaplotypeScore=419.6695;IndelType=D;MQ=50.63;MQ0=0;MQRankSum=0.59;QD=2.25;ReadPosRankSum=2.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324862    GT:AD:DP:GQ:PL    0/1:28,27:64:99:183,0,263
1    150300727    rs834225    T    C    264.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.355;QD=9.43;ReadPosRankSum=0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324862    GT:AD:DP:GQ:PL    0/1:14,14:28:99:294,0,441
1    150307270    rs1260408    T    G    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324862    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,99
1    150315719    rs146467247    AAAAAAAT    A    218.19    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=48.4758;IndelType=D;MQ=58.68;MQ0=0;MQRankSum=0.736;QD=36.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324862    GT:AD:DP:GQ:PL    0/1:1,5:6:20.63:257,0,21
1    150321486    rs1625468    G    A    322.10    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=13.42;ReadPosRankSum=0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493553    GT:AD:DP:GQ:PL    0/1:13,11:24:99:352,0,447
1    150389964    rs74992727    GA    G    701.60    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=5.816;DB;DP=75;FS=0.0;HRun=10;HaplotypeScore=183.3636;IndelType=D;MQ=60.86;MQ0=0;MQRankSum=0.141;QD=9.35;ReadPosRankSum=-1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369067    GT:AD:DP:GQ:PL    0/1:38,37:75:99:741,0,1003
1    150390413    rs1260418    C    T    73.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.71;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369067    GT:AD:DP:GQ:PL    0/1:2,3:5:66.50:104,0,66
1    150432870    rs141601995    GGTT    G    276.49    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=103.2139;IndelType=D;MQ=60.49;MQ0=0;MQRankSum=0.722;QD=12.57;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369068    GT:AD:DP:GQ:PL    0/1:13,9:22:99:316,0,401
1    150436922    rs75323812    A    G    67.87    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=50.96;MQ0=0;MQRankSum=0.322;QD=6.17;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369068    GT:AD:DP:GQ:PL    0/1:7,4:11:97.86:98,0,178
1    150445819    rs7002    A    G    1348.98    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DB;DP=92;Dels=0.0;FS=1.939;HRun=0;HaplotypeScore=0.8321;MQ=59.8;MQ0=0;MQRankSum=-0.179;QD=14.66;ReadPosRankSum=-0.329;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539519    GT:AD:DP:GQ:PL    0/1:45,47:92:99:1379,0,1462
1    150460168    rs2275246    A    G    161.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=13.44;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369051    GT:AD:DP:GQ:PL    0/1:6,6:12:99:191,0,197
1    150471848    rs71580306    A    AT    200.80    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.253;DB;DP=39;FS=0.0;HRun=11;HaplotypeScore=123.4814;IndelType=I;MQ=59.09;MQ0=0;MQRankSum=1.151;QD=5.15;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438568    GT:AD:DP:GQ:PL    0/1:27,11:39:99:240,0,368
1    150477061    rs3738487    C    T    1571.35    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.39;DB;DP=110;Dels=0.0;FS=5.921;HRun=2;HaplotypeScore=0.5784;MQ=58.81;MQ0=0;MQRankSum=1.155;QD=14.29;ReadPosRankSum=-0.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463555    GT:AD:DP:GQ:PL    0/1:52,58:110:99:1601,0,1397
1    150483236    rs9661040    A    C    195.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.683;QD=12.23;ReadPosRankSum=0.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ECM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490346    GT:AD:DP:GQ:PL    0/1:8,8:16:99:226,0,261
1    150483355    rs3737240    C    T    1233.64    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=2.724;DB;DP=78;Dels=0.0;FS=0.887;HRun=0;HaplotypeScore=0.9332;MQ=59.41;MQ0=0;MQRankSum=1.503;QD=15.82;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=T130M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150483352_150483674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ECM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346569    GT:AD:DP:GQ:PL    0/1:35,43:78:99:1264,0,954
1    150483840    rs4970979    C    T    680.49    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.9;DB;DP=53;Dels=0.0;FS=1.332;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.541;QD=12.84;ReadPosRankSum=1.551;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ECM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490346    GT:AD:DP:GQ:PL    0/1:28,25:53:99:710,0,884
1    150484395    rs71580308    ACC    A    236.78    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;FS=0.0;HRun=7;HaplotypeScore=45.7411;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=0.48;QD=23.68;ReadPosRankSum=0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ECM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490346    GT:AD:DP:GQ:PL    0/1:2,8:10:74.87:276,0,75
1    150484555    rs875514    C    G    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ECM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490346    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,72
1    150484987    rs13294    G    A    1216.20    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=2.505;DB;DP=57;Dels=0.0;FS=7.948;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.052;QD=21.34;ReadPosRankSum=1.017;SNPEFF_AMINO_ACID_CHANGE=G290S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150484828_150485048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ECM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346569    GT:AD:DP:GQ:PL    0/1:21,36:57:99:1246,0,581
1    150485571    rs12031974    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ECM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490346    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    150526044    rs41317515    G    C    819.54    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.503;DB;DP=68;Dels=0.0;FS=0.997;HRun=1;HaplotypeScore=1.4679;MQ=58.7;MQ0=0;MQRankSum=-1.092;QD=12.05;ReadPosRankSum=-0.18;SNPEFF_AMINO_ACID_CHANGE=A193P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150525902_150526598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271643    GT:AD:DP:GQ:PL    0/1:35,32:68:99:850,0,1093
1    150526406    rs6681639    C    T    121.84    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.754;DB;DP=17;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.9469;MQ=58.63;MQ0=0;MQRankSum=-0.452;QD=7.17;ReadPosRankSum=-1.156;SNPEFF_AMINO_ACID_CHANGE=G313;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150525902_150526598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271643    GT:AD:DP:GQ:PL    0/1:11,6:17:99:152,0,375
1    150529322    rs34379037    T    TAA    2811.55    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.609;DB;DP=93;FS=4.743;HRun=0;HaplotypeScore=284.7721;IndelType=I;MQ=59.67;MQ0=0;MQRankSum=1.771;QD=29.91;ReadPosRankSum=0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483335    GT:AD:DP:GQ:PL    0/1:42,52:93:99:2851,0,1684
1    150531008    rs10888382    T    C    1143.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=29.31;SNPEFF_AMINO_ACID_CHANGE=N352;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150530949_150531125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407995    GT:AD:DP:GQ:PL    1/1:0,39:39:90.28:1176,90,0
1    150531050    rs10749657    G    A    1233.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.9;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=P366;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150530949_150531125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407995    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1267,102,0
1    150531170    rs10749658    C    T    551.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=H868;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150530949_150531224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369041    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:585,42,0
1    150531380    rs11204664    T    C    84.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369041    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    150550019    rs11428742    T    TA    4518.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;FS=0.0;HRun=1;HaplotypeScore=206.3531;IndelType=I;MQ=60.73;MQ0=0;QD=43.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307940    GT:AD:DP:GQ:PL    1/1:2,101:103:99:4519,304,0
1    150551295    rs35661734    T    C    236.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=10.75;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307940    GT:AD:DP:GQ:PL    0/1:11,11:22:99:267,0,362
1    150600181    rs2280078    C    T    114.56    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=12.73;ReadPosRankSum=-1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271690    GT:AD:DP:GQ:PL    0/1:4,5:9:99:145,0,114
1    150666797    rs7412396    G    A    388.13    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=32.34;ReadPosRankSum=1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLPH3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479757    GT:AD:DP:GQ:PL    0/1:1,11:12:5.64:418,0,6
1    150666990    rs2867300    G    C    174.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HORMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322343    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
1    150671243    rs147622250    AC    A    1061.39    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=5.739;DB;DP=48;FS=5.762;HRun=1;HaplotypeScore=111.9576;IndelType=D;MQ=60.23;MQ0=0;MQRankSum=-1.714;QD=22.11;ReadPosRankSum=1.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HORMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322343    GT:AD:DP:GQ:PL    0/1:18,30:48:99:1100,0,701
1    150676485    rs12403609    T    C    79.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HORMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368987    GT:AD:DP:GQ:PL    0/1:1,3:4:31.54:109,0,32
1    150678910    rs1336899    T    C    244.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=58.71;MQ0=0;MQRankSum=0.088;QD=13.56;ReadPosRankSum=-1.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HORMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368987    GT:AD:DP:GQ:PL    0/1:9,9:18:99:274,0,329
1    150679033    rs1336900    G    A    984.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.911;DB;DP=66;Dels=0.0;FS=1.028;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.333;QD=14.91;ReadPosRankSum=0.18;SNPEFF_AMINO_ACID_CHANGE=T187I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150679029_150679285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HORMAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368995    GT:AD:DP:GQ:PL    0/1:33,33:66:99:1014,0,1044
1    150679358    rs11586422    C    T    229.16    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=22.92;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HORMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322343    GT:AD:DP:GQ:PL    0/1:2,8:10:45.06:259,0,45
1    150686633    rs34593358    A    T    445.25    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=1.196;DB;DP=60;Dels=0.0;FS=2.89;HRun=1;HaplotypeScore=2.4063;MQ=59.62;MQ0=0;MQRankSum=0.837;QD=7.42;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HORMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322343    GT:AD:DP:GQ:PL    0/1:43,17:60:99:475,0,1206
1    150705755    rs1415148    G    A    80.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.14;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368985    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:111,0,69
1    150727329    rs12068264    C    T    323.37    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.423;QD=21.56;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368985    GT:AD:DP:GQ:PL    0/1:3,11:15:68.86:353,0,69
1    150727539    rs2230061    G    A    1051.21    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=96;Dels=0.0;FS=2.735;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.208;QD=10.95;ReadPosRankSum=0.155;SNPEFF_AMINO_ACID_CHANGE=R113W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150727477_150727626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368985    GT:AD:DP:GQ:PL    0/1:56,39:96:99:1081,0,1682
1    150730184    rs11204722    C    A    44.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.13;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368985    GT:AD:DP:GQ:PL    0/1:1,3:4:27.95:74,0,28
1    150730279    rs2275235    A    G    150.55    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9601;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=7.92;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368985    GT:AD:DP:GQ:PL    0/1:12,7:19:99:181,0,338
1    150771703    rs10788796    T    C    1602.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=A277;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150771644_150771749;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271651    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1636,126,0
1    150779755    rs6587522    C    T    2305.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=58.57;MQ0=0;QD=30.74;SNPEFF_AMINO_ACID_CHANGE=R49K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150779725_150779910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443913    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2339,178,0
1    150784620    rs10305748    C    T    427    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=35;Dels=0.0;FS=3.837;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.397;QD=12.2;ReadPosRankSum=2.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354396    GT:AD:DP:GQ:PL    0/1:19,16:35:99:457,0,495
1    150789961    rs3894771    A    T    50.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=15;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=3.34;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354396    GT:AD:DP:GQ:PL    0/1:9,6:15:80.11:80,0,330
1    150801466    rs3738483    T    C    173.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468970    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
1    150804429    rs10305704    A    C    62.72    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.223;DB;DP=25;Dels=0.0;FS=2.566;HRun=0;HaplotypeScore=2.8365;MQ=58.13;MQ0=0;MQRankSum=-1.941;QD=2.51;ReadPosRankSum=1.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497108    GT:AD:DP:GQ:PL    0/1:19,6:25:92.71:93,0,610
1    150808889    rs2228099    C    G    514.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=45;Dels=0.0;FS=4.454;HRun=0;HaplotypeScore=2.3609;MQ=59.07;MQ0=0;MQRankSum=-0.477;QD=11.42;ReadPosRankSum=-1.895;SNPEFF_AMINO_ACID_CHANGE=V173;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150808756_150808969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394700    GT:AD:DP:GQ:PL    0/1:25,20:45:99:544,0,787
1    150811712    rs1027699    T    C    33.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504358    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:63,0,33
1    150811794    rs2256355    T    C    191.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=21.24;ReadPosRankSum=-2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504358    GT:AD:DP:GQ:PL    0/1:3,6:9:98.66:221,0,99
1    150815054    rs149242771    GA    G    104.62    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=2.54;DB;DP=20;FS=0.0;HRun=9;HaplotypeScore=57.8268;IndelType=D;MQ=60.15;MQ0=0;MQRankSum=-0.529;QD=5.23;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354396    GT:AD:DP:GQ:PL    0/1:13,7:20:99:144,0,261
1    150923099    rs17661357    T    C    1061.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.439;DB;DP=77;Dels=0.0;FS=3.134;HRun=1;HaplotypeScore=5.8189;MQ=57.87;MQ0=0;MQRankSum=0.729;QD=13.79;ReadPosRankSum=-1.105;SNPEFF_AMINO_ACID_CHANGE=C582;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150922934_150923566;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SETDB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271640    GT:AD:DP:GQ:PL    0/1:35,42:77:99:1092,0,1060
1    150923774    rs2124952    T    A    817.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.027;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.49;MQ0=0;MQRankSum=-2.606;QD=18.17;ReadPosRankSum=0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SETDB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534805    GT:AD:DP:GQ:PL    0/1:18,27:45:99:848,0,532
1    150935872    rs2280627    A    G    555.50    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=45;Dels=0.0;FS=3.882;HRun=2;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.561;QD=12.34;ReadPosRankSum=-0.871;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CERS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271688    GT:AD:DP:GQ:PL    0/1:26,19:45:99:585,0,901
1    150936280    rs74681459    C    G    392.81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.35;QD=19.64;ReadPosRankSum=0.27;SNPEFF_AMINO_ACID_CHANGE=N1244K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150936006_150936327;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SETDB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000498193    GT:AD:DP:GQ:PL    0/1:8,12:20:99:423,0,259
1    150938571    rs8444    G    A    575.60    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=4.935;DB;DP=52;Dels=0.0;FS=6.524;HRun=0;HaplotypeScore=0.9578;MQ=59.56;MQ0=0;MQRankSum=0.029;QD=11.07;ReadPosRankSum=1.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CERS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361419    GT:AD:DP:GQ:PL    0/1:30,22:52:99:606,0,759
1    150938616    rs267739    G    A    2627.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.19;MQ0=0;QD=32.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CERS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361419    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2660,196,0
1    150939744    rs11204750    C    A    617.73    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.0;DB;DP=39;Dels=0.0;FS=5.225;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.254;QD=15.84;ReadPosRankSum=-0.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CERS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421609    GT:AD:DP:GQ:PL    0/1:18,21:39:99:648,0,557
1    150940357    rs6656535    G    T    701.66    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=0.697;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8899;MQ=59.16;MQ0=0;MQRankSum=-1.076;QD=8.45;ReadPosRankSum=0.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CERS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457392    GT:AD:DP:GQ:PL    0/1:53,30:83:99:732,0,1751
1    150940358    rs59988025    C    T    690.10    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.038;DB;DP=83;Dels=0.0;FS=2.531;HRun=0;HaplotypeScore=0.8941;MQ=59.16;MQ0=0;MQRankSum=-0.946;QD=8.31;ReadPosRankSum=-0.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CERS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457392    GT:AD:DP:GQ:PL    0/1:52,31:83:99:720,0,1667
1    150940625    rs267738    T    G    781.15    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=67;Dels=0.0;FS=7.159;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=1.887;QD=11.66;ReadPosRankSum=1.672;SNPEFF_AMINO_ACID_CHANGE=E115A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150940559_150940677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CERS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271688    GT:AD:DP:GQ:PL    0/1:34,32:67:99:811,0,899
1    150941381    rs752376    C    T    764.71    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.558;DB;DP=57;Dels=0.0;FS=1.052;HRun=1;HaplotypeScore=0.8321;MQ=58.86;MQ0=0;MQRankSum=0.246;QD=13.42;ReadPosRankSum=-1.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SETDB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271640    GT:AD:DP:GQ:PL    0/1:29,27:57:99:795,0,928
1    150944541    rs267737    A    G    33.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CERS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271688    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
1    150958836    rs267733    A    G    499.66    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.322;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=16.12;ReadPosRankSum=0.496;SNPEFF_AMINO_ACID_CHANGE=D166G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150958812_150958891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368947    GT:AD:DP:GQ:PL    0/1:14,17:31:99:530,0,403
1    150958977    rs2305814    T    C    361.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=24;Dels=0.0;FS=1.815;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.087;QD=15.05;ReadPosRankSum=0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474997    GT:AD:DP:GQ:PL    0/1:12,12:24:99:391,0,418
1    150960350    rs7532008    A    C    40.57    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=26;Dels=0.0;FS=5.31;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.556;QD=1.56;ReadPosRankSum=-1.89;SNPEFF_AMINO_ACID_CHANGE=A205;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150960348_150960432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368947    GT:AD:DP:GQ:PL    0/1:22,4:26:70.57:71,0,676
1    150969992    rs2925740    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368947    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    150970577    rs2925741    G    T    3652.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9963;MQ=59.0;MQ0=0;QD=35.81;SNPEFF_AMINO_ACID_CHANGE=T243K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150970558_150970749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM63A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312210    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3653,283,0
1    150970836    rs1673160    T    A    436.54    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.819;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-1.461;QD=10.15;ReadPosRankSum=-0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368947    GT:AD:DP:GQ:PL    0/1:26,17:43:99:467,0,898
1    150972538    rs708909    G    A    211.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368947    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
1    150973514    rs771203    G    A    168.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM63A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312210    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
1    150974162    rs771204    G    A    352.31    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=28;Dels=0.0;FS=4.151;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.48;QD=12.58;ReadPosRankSum=-0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM63A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312210    GT:AD:DP:GQ:PL    0/1:13,15:28:99:382,0,338
1    150975108    rs771205    T    C    1175.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=K44E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_150974641_150975182;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM63A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361738    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1208,102,0
1    150990466    rs71090118    C    CAT    520.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=31.1873;IndelType=I;MQ=60.0;MQ0=0;QD=47.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271619    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:562,30,0
1    150990825    rs3738480    A    G    5169.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.84;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271619    GT:AD:DP:GQ:PL    1/1:0,141:141:99:5170,382,0
1    150991285    rs6664220    A    G    85.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271619    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
1    150991330    rs6664295    A    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271619    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    150997940    rs3738478    T    C    669.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271619    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:703,51,0
1    150998221    rs111600445    AT    A    576.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=13;HaplotypeScore=156.9684;IndelType=D;MQ=57.83;MQ0=0;QD=15.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271619    GT:AD:DP:GQ:PL    1/1:10,27:38:85.46:619,85,0
1    150999863    rs55717234    A    G    63.63    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=6.36;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271619    GT:AD:DP:GQ:PL    0/1:7,3:10:93.62:94,0,250
1    151006539    rs3738476    C    A    3028.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.48;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=G112;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151006282_151008189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368935    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3062,235,0
1    151009208    rs41266605    A    G    498.44    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=56;Dels=0.0;FS=1.052;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.043;QD=8.9;ReadPosRankSum=-0.487;SNPEFF_AMINO_ACID_CHANGE=T3A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151009067_151009242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361277    GT:AD:DP:GQ:PL    0/1:36,20:56:99:528,0,1074
1    151015299    rs34746028    G    GA    151.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=10;FS=0.0;HRun=11;HaplotypeScore=25.2382;IndelType=I;MQ=60.94;MQ0=0;MQRankSum=0.747;QD=15.18;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295294    GT:AD:DP:GQ:PL    1/1:4,6:10:0.81:190,1,0
1    151019180    rs6587553    A    G    1240.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392802    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1273,102,0
1    151026815    rs2902810    C    T    2961.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368926    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2994,217,0
1    151028234    rs11204767    G    T    161.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=23.1;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_151028153_151028469;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42SE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540998    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:194,15,0
1    151039609    rs3738481    A    G    663.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=27.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368921    GT:AD:DP:GQ:PL    1/1:0,24:24:63.13:697,63,0
1    151040435    rs15740    G    A    643.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368917    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:677,51,0
1    151070252    rs35034487    CA    C    210.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=72.7806;IndelType=D;MQ=58.55;MQ0=0;QD=13.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368916    GT:AD:DP:GQ:PL    1/1:2,13:16:37.69:252,38,0
1    151104598    rs4971005    A    G    103.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=25.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464018    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
1    151104950    rs10788800    G    A    279.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=A446V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151104445_151105169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392792    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:313,27,0
1    151108137    rs4971007    T    G    1762.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_AMINO_ACID_CHANGE=T415P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151108067_151108240;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368912    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1796,138,0
1    151109641    rs4971008    G    A    501.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485745    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:534,45,0
1    151114882    rs11464219    C    CT    722.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=35.769;IndelType=I;MQ=61.26;MQ0=0;QD=42.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341697    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:765,51,0
1    151115186    rs12569193    C    T    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341697    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
1    151146186    rs7552226    C    G    611.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368902    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:644,48,0
1    151149601    rs6656261    A    G    209.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VPS72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354473    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
1    151157765    rs4971011    T    C    293.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VPS72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463470    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
1    151204632    rs2298263    C    G    243.23    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.598;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.905;QD=8.69;ReadPosRankSum=-0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418435    GT:AD:DP:GQ:PL    0/1:16,12:28:99:273,0,545
1    151205303    rs7544947    A    G    238.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418435    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:271,21,0
1    151209063    rs12407426    C    T    1349.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=Y24;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151209034_151209239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414290    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1382,99,0
1    151210789    rs7532935    C    T    1055.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464105    GT:AD:DP:GQ:PL    1/1:0,29:29:84.26:1089,84,0
1    151212399    rs141190258    C    CCTT    6985.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;FS=0.0;HRun=0;HaplotypeScore=317.5802;IndelType=I;MQ=55.61;MQ0=0;QD=63.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460157    GT:AD:DP:GQ:PL    1/1:5,99:110:99:6985,316,0
1    151237589    rs66903183    TC    T    446.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=7;HaplotypeScore=53.338;IndelType=D;MQ=59.93;MQ0=0;QD=24.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461434    GT:AD:DP:GQ:PL    1/1:2,16:18:48.11:489,48,0
1    151238222    rs2275900    G    A    313.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=1.107;QD=28.52;ReadPosRankSum=-0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437736    GT:AD:DP:GQ:PL    1/1:1,10:11:27.09:347,27,0
1    151239051    rs7489    T    C    806.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=26.89;SNPEFF_AMINO_ACID_CHANGE=S317;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151238996_151239063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368884    GT:AD:DP:GQ:PL    1/1:0,30:30:72.16:840,72,0
1    151239570    rs10888408    C    T    1778.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437736    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1811,141,0
1    151254041    rs3811406    T    C    982.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_AMINO_ACID_CHANGE=H32R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151254019_151254405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-126K1.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447795    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:1015,75,0
1    151263677    .    G    GACA    1361.97    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.51;DP=54;FS=6.343;HRun=0;HaplotypeScore=187.7381;IndelType=I;MQ=59.15;MQ0=0;MQRankSum=0.61;QD=25.22;ReadPosRankSum=0.93;SNPEFF_AMINO_ACID_CHANGE=D1236DN;SNPEFF_CODON_CHANGE=gac/gACAac;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_151263191_151264379;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF687;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324048    GT:AD:DP:GQ:PL    0/1:28,25:54:99:1401,0,1048
1    151263782    rs10788803    A    G    522.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271657    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:556,42,0
1    151266354    rs77416301    C    T    123.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=12.37;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469239    GT:AD:DP:GQ:PL    0/1:5,5:10:99:154,0,175
1    151278505    rs2031797    A    G    367.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489223    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:400,30,0
1    151280400    rs1536617    C    G    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271657    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
1    151288172    rs1056847    G    A    1242.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=D262;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151288049_151288985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368872    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1275,99,0
1    151288391    rs1752379    A    G    1729.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=D189;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151288049_151288985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368872    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1763,138,0
1    151314379    rs1752387    T    C    36.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392746    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
1    151314418    rs2233857    T    C    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392746    GT:AD:DP:GQ:PL    0/1:2,2:4:64.45:71,0,64
1    151316161    rs1752386    G    A    1004.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.63;SNPEFF_AMINO_ACID_CHANGE=L143;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151316157_151316358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436637    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1037,75,0
1    151337788    rs10788804    A    G    456.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELENBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426705    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:489,39,0
1    151338570    rs2800953    G    A    168.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=33.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELENBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427867    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
1    151341728    rs35093538    G    GC    423.23    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.514;DB;DP=30;FS=0.0;HRun=3;HaplotypeScore=63.4483;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=2.165;QD=14.11;ReadPosRankSum=-1.843;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELENBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368868    GT:AD:DP:GQ:PL    0/1:17,13:30:99:462,0,456
1    151372138    rs7172    G    A    3975.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0756;MQ=59.48;MQ0=0;QD=32.06;SNPEFF_AMINO_ACID_CHANGE=P25;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151372010_151372203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290541    GT:AD:DP:GQ:PL    1/1:1,123:124:99:3976,298,0
1    151372770    rs2495390    A    G    821    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271715    GT:AD:DP:GQ:PL    1/1:0,27:27:69.21:854,69,0
1    151373200    rs2495391    T    C    2904.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.72;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271715    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2937,214,0
1    151377248    rs6667714    T    C    938.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=30.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491586    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:972,75,0
1    151379250    rs2274535    G    A    753.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492528    GT:AD:DP:GQ:PL    1/1:0,19:20:57.19:787,57,0
1    151381320    rs142660073    GA    G    3444.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=125;FS=0.0;HRun=7;HaplotypeScore=347.2334;IndelType=D;MQ=60.41;MQ0=0;MQRankSum=1.702;QD=27.56;ReadPosRankSum=1.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271715    GT:AD:DP:GQ:PL    1/1:11,114:125:99:3444,337,0
1    151384711    rs1887545    A    G    687.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271715    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:720,54,0
1    151384733    rs3748550    G    A    736.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271715    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:770,57,0
1    151395782    rs2274533    T    C    419.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437847    GT:AD:DP:GQ:PL    1/1:0,12:13:33.11:453,33,0
1    151396037    rs2274534    A    C    616.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437847    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:649,51,0
1    151400942    rs11204811    A    C    1323.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450842    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1356,105,0
1    151402045    rs6587577    A    G    1323.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450842    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1357,105,0
1    151414924    rs9659456    A    G    96.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271715    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:129,9,0
1    151499635    rs2298168    C    T    1113.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271636    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1146,90,0
1    151501698    rs2096232    A    G    146.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271636    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:179,15,0
1    151501737    rs6678068    T    C    414.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271636    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:448,36,0
1    151504690    rs7549296    G    A    183.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464886    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:217,18,0
1    151506526    rs41272467    G    A    213.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.839;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.299;QD=11.85;ReadPosRankSum=-0.722;SNPEFF_AMINO_ACID_CHANGE=A940T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151506451_151506612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271636    GT:AD:DP:GQ:PL    0/1:9,9:18:99:243,0,324
1    151508061    rs11204842    A    C    1324.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=33.97;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271636    GT:AD:DP:GQ:PL    1/1:1,38:39:99:1358,105,0
1    151510026    rs1418823    A    G    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467998    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
1    151512895    rs3828054    A    G    427.09    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.88;DB;DP=34;Dels=0.0;FS=3.329;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=12.56;ReadPosRankSum=1.087;SNPEFF_AMINO_ACID_CHANGE=Q18R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151512781_151512902;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUFT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353024    GT:AD:DP:GQ:PL    0/1:18,16:34:99:457,0,557
1    151535020    rs34211422    A    ATC    333.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=34.6258;IndelType=I;MQ=61.07;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353024    GT:AD:DP:GQ:PL    1/1:2,8:10:24.08:375,24,0
1    151542099    rs3748610    G    T    1348.04    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.525;DB;DP=108;Dels=0.0;FS=3.045;HRun=0;HaplotypeScore=1.664;MQ=60.0;MQ0=0;MQRankSum=1.153;QD=12.48;ReadPosRankSum=-0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461859    GT:AD:DP:GQ:PL    0/1:57,51:108:99:1378,0,1672
1    151546931    rs6660238    A    G    644.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.68;MQ0=0;QD=30.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498606    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:677,54,0
1    151551078    rs1544218    A    G    31.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490156    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
1    151552301    rs3833527    TG    T    152.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=17.9234;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=0.736;QD=25.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490156    GT:AD:DP:GQ:PL    0/1:1,5:6:29.95:192,0,30
1    151634512    rs3831367    A    AT    175.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=7;HaplotypeScore=10.9531;IndelType=I;MQ=61.78;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368838    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:217,18,0
1    151675618    rs1308150    T    C    328.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368833    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:362,30,0
1    151679963    rs2280473    C    T    111.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.92;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419910    GT:AD:DP:GQ:PL    0/1:3,4:7:94.87:141,0,95
1    151681567    rs2280474    G    A    590.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.053;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.684;QD=16.39;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290583    GT:AD:DP:GQ:PL    0/1:16,20:36:99:620,0,453
1    151681635    rs2280475    T    C    711.26    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.868;DB;DP=53;Dels=0.0;FS=6.755;HRun=1;HaplotypeScore=4.1719;MQ=58.77;MQ0=0;MQRankSum=-1.593;QD=13.42;ReadPosRankSum=-1.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290583    GT:AD:DP:GQ:PL    0/1:27,25:53:99:741,0,819
1    151686983    rs939592    T    A    83.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290583    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
1    151732700    rs10888433    A    G    1468.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461182    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1502,114,0
1    151733335    rs8480    T    G    1695.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=48.76;MQ0=0;QD=30.27;SNPEFF_AMINO_ACID_CHANGE=E176A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151733292_151733375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368829    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1728,138,0
1    151735576    rs7007    T    C    769.70    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=52;Dels=0.0;FS=3.58;HRun=4;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.713;QD=14.8;ReadPosRankSum=-0.417;SNPEFF_AMINO_ACID_CHANGE=E67G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151735466_151735622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368829    GT:AD:DP:GQ:PL    0/1:22,30:52:99:800,0,632
1    151740420    rs12066445    G    A    218.22    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.493;QD=16.79;ReadPosRankSum=1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418982    GT:AD:DP:GQ:PL    0/1:6,7:13:99:248,0,202
1    151740479    rs1196457    C    A    1184.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=27.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418982    GT:AD:DP:GQ:PL    1/1:0,43:43:96.30:1218,96,0
1    151740666    rs2495397    T    C    1776.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7621;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151740534_151740709;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315067    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1810,135,0
1    151742494    rs4995159    A    G    491.32    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.339;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.24;MQ0=0;MQRankSum=-2.182;QD=16.94;ReadPosRankSum=-0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418982    GT:AD:DP:GQ:PL    0/1:11,18:29:99:521,0,318
1    151742550    .    GGAGAGA    G    425.46    PASS    AB=0.915;AC=1;AF=0.50;AN=2;BaseQRankSum=6.503;DP=86;FS=0.0;HRun=0;HaplotypeScore=1504.4186;IndelType=D;MQ=50.07;MQ0=0;MQRankSum=-5.989;QD=4.95;ReadPosRankSum=3.291;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418982    GT:AD:DP:GQ:PL    0/1:78,8:86:99:464,0,3581
1    151742559    .    GGGAGAGGGAGACCATGGGGAGACGGAGAC    G    4777.03    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=7.57;DP=89;FS=0.0;HRun=0;HaplotypeScore=2320.0429;IndelType=D;MQ=50.61;MQ0=0;MQRankSum=-6.57;QD=53.67;ReadPosRankSum=-0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418982    GT:AD:DP:GQ:PL    0/1:51,38:89:99:4777,0,11456
1    151742565    rs140076465    GGGAGACCATGGGGAGACGGAGAC    G    4277.46    PASS    AB=0.921;AC=1;AF=0.50;AN=2;BaseQRankSum=7.92;DB;DP=93;FS=0.0;HRun=0;HaplotypeScore=2106.5769;IndelType=D;MQ=51.04;MQ0=0;MQRankSum=-6.872;QD=45.99;ReadPosRankSum=0.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418982    GT:AD:DP:GQ:PL    0/1:85,8:93:99:4277,0,10692
1    151742798    rs3748612    T    C    1622.72    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.27;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=58.56;MQ0=0;MQRankSum=1.834;QD=16.73;ReadPosRankSum=0.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418982    GT:AD:DP:GQ:PL    0/1:45,52:97:99:1653,0,1444
1    151743870    rs3833528    TA    T    203.65    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=37.4887;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=18.51;ReadPosRankSum=1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315067    GT:AD:DP:GQ:PL    0/1:4,7:11:99:243,0,105
1    151747043    rs1123855    C    T    92.30    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=5.77;ReadPosRankSum=-0.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315067    GT:AD:DP:GQ:PL    0/1:12,4:16:99:122,0,304
1    151747733    rs1781421    C    T    221.58    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=10.55;ReadPosRankSum=-0.253;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315067    GT:AD:DP:GQ:PL    0/1:13,8:21:99:252,0,478
1    151747799    rs1781419    G    A    722.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.443;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.306;QD=15.71;ReadPosRankSum=-0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315067    GT:AD:DP:GQ:PL    0/1:23,23:46:99:753,0,715
1    151747970    rs11204885    A    G    778.34    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.288;DB;DP=69;Dels=0.0;FS=2.148;HRun=0;HaplotypeScore=1.9865;MQ=60.0;MQ0=0;MQRankSum=-0.389;QD=11.28;ReadPosRankSum=-0.351;SNPEFF_AMINO_ACID_CHANGE=H220;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151747868_151748019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TDRKH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440583    GT:AD:DP:GQ:PL    0/1:42,27:69:99:808,0,1375
1    151748425    rs3923394    C    A    470.86    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=35;Dels=0.0;FS=3.536;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.512;QD=13.45;ReadPosRankSum=-1.931;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315067    GT:AD:DP:GQ:PL    0/1:18,17:35:99:501,0,632
1    151750963    rs1996730    C    T    1026.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TDRKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463553    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1060,78,0
1    151751081    rs1996729    G    A    395.13    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.628;DB;DP=22;Dels=0.0;FS=1.808;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.58;QD=17.96;ReadPosRankSum=-1.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TDRKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463553    GT:AD:DP:GQ:PL    0/1:8,14:22:99:425,0,258
1    151754112    rs35077383    T    C    260.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.09;DB;DP=30;Dels=0.0;FS=4.624;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.286;QD=8.69;ReadPosRankSum=0.242;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TDRKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463553    GT:AD:DP:GQ:PL    0/1:20,10:30:99:291,0,621
1    151780177    rs3828057    C    T    268.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=58.45;MQ0=0;MQRankSum=-0.306;QD=17.89;ReadPosRankSum=-2.756;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318247    GT:AD:DP:GQ:PL    0/1:5,10:15:99:298,0,161
1    151783688    rs939595    A    C    35.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318247    GT:AD:DP:GQ:PL    0/1:4,2:6:65.82:66,0,148
1    151789588    .    C    CTGTGTGTG    924.18    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=0;HaplotypeScore=123.0164;IndelType=I;MQ=36.64;MQ0=0;QD=84.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318247    GT:AD:DP:GQ:PL    1/1:4,7:11:24.08:966,24,0
1    151789647    rs12144914    T    G    225.77    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=20;Dels=0.0;FS=10.843;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=0.367;QD=11.29;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318247    GT:AD:DP:GQ:PL    0/1:9,11:20:99:256,0,263
1    151798295    rs12030974    G    A    560.54    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DB;DP=45;Dels=0.0;FS=7.562;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.134;QD=12.46;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318247    GT:AD:DP:GQ:PL    0/1:24,21:45:99:591,0,602
1    151798372    rs111882199    G    C    1014.18    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=67;Dels=0.0;FS=0.957;HRun=1;HaplotypeScore=1.6208;MQ=59.66;MQ0=0;MQRankSum=0.556;QD=15.14;ReadPosRankSum=-0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318247    GT:AD:DP:GQ:PL    0/1:30,37:67:99:1044,0,860
1    151819738    .    G    GGGAGGCA    532.45    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=121.3827;IndelType=I;MQ=49.92;MQ0=0;QD=31.32;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368817    GT:AD:DP:GQ:PL    1/1:9,7:17:22.32:574,22,0
1    151820298    rs6587624    G    C    1163.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=L206V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151820214_151820338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368817    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1197,87,0
1    151820324    rs6587625    T    C    965.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.208;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5494;MQ=59.32;MQ0=0;MQRankSum=0.988;QD=28.39;ReadPosRankSum=0.695;SNPEFF_AMINO_ACID_CHANGE=D197G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151820214_151820338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368817    GT:AD:DP:GQ:PL    1/1:2,32:34:36.49:998,36,0
1    151825149    rs745055    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368817    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    151825991    rs7556386    G    T    2716.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.73;SNPEFF_AMINO_ACID_CHANGE=G17;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151825919_151826173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368817    GT:AD:DP:GQ:PL    1/1:0,82:83:99:2749,217,0
1    151847180    rs10749666    A    G    521.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477437    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:554,45,0
1    151847193    rs11204907    A    C    310.56    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.53;MQ0=0;MQRankSum=1.184;QD=16.35;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477437    GT:AD:DP:GQ:PL    0/1:9,10:19:99:341,0,296
1    151862661    rs1060870    G    A    528.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489410    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:562,42,0
1    151867560    rs3762427    G    A    1552.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=51.91;MQ0=1;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=D70;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_151867484_151867670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368814    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1586,123,0
1    152005327    rs35135981    TA    T    588.98    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=4.375;DB;DP=28;FS=1.75;HRun=1;HaplotypeScore=69.7426;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=0.282;QD=21.04;ReadPosRankSum=0.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271638    GT:AD:DP:GQ:PL    0/1:11,17:28:99:628,0,434
1    152009530    rs3811422    T    C    253.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478109    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:286,24,0
1    152060796    rs2935207    A    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCHHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368806    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    152081632    rs2496251    C    G    2003.66    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=3.347;DB;DP=144;Dels=0.0;FS=3.028;HRun=2;HaplotypeScore=4.5524;MQ=59.1;MQ0=0;MQRankSum=2.85;QD=13.91;ReadPosRankSum=0.331;SNPEFF_AMINO_ACID_CHANGE=R1354P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152078793_152085554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCHH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368804    GT:AD:DP:GQ:PL    0/1:70,72:144:99:2034,0,1942
1    152083325    rs11803731    A    T    158.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.663;MQ=55.21;MQ0=0;MQRankSum=3.182;QD=5.29;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=L790M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152078793_152085554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCHH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368804    GT:AD:DP:GQ:PL    0/1:20,10:30:99:189,0,674
1    152085505    rs2515663    A    C    827.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_AMINO_ACID_CHANGE=L63R;SNPEFF_CODON_CHANGE=cTt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152078793_152085554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCHH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368804    GT:AD:DP:GQ:PL    1/1:0,27:27:69.20:860,69,0
1    152185762    rs41266112    C    G    1338.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.82;MQ0=0;QD=23.48;SNPEFF_AMINO_ACID_CHANGE=Q2781H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1371,111,0
1    152185768    rs41266114    T    G    831.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.92;MQ0=0;QD=20.29;SNPEFF_AMINO_ACID_CHANGE=S2779;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,41:41:75.20:865,75,0
1    152185774    rs61814932    A    G    643.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.54;MQ0=0;QD=17.39;SNPEFF_AMINO_ACID_CHANGE=S2777;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,37:37:60.16:677,60,0
1    152185780    rs41266116    G    A    463.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.42;MQ0=0;QD=15.44;SNPEFF_AMINO_ACID_CHANGE=H2775;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,30:30:45.10:496,45,0
1    152185790    rs76102381    T    C    158.13    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.58;MQ0=0;QD=9.3;SNPEFF_AMINO_ACID_CHANGE=H2772R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,17:17:18.04:191,18,0
1    152185792    rs74493243    G    A    201.10    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.58;MQ0=0;QD=11.83;SNPEFF_AMINO_ACID_CHANGE=S2771;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,17:17:21.06:234,21,0
1    152185796    rs41266118    A    G    201.10    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.58;MQ0=0;QD=11.83;SNPEFF_AMINO_ACID_CHANGE=L2770P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,17:17:21.06:234,21,0
1    152186141    rs41266128    C    T    146.40    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=3.66;MQ0=236;QD=0.59;SNPEFF_AMINO_ACID_CHANGE=R2655H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:227,23:250:23.88:179,24,0
1    152186766    rs4845747    G    A    743.01    MQFilter40    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.504;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.21;MQ0=143;MQRankSum=-0.624;QD=2.97;ReadPosRankSum=1.193;SNPEFF_AMINO_ACID_CHANGE=R2447C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:158,92:250:99:773,0,1147
1    152187554    rs61814935    C    T    236.30    MQFilter40;QDFilter2    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=250;DS;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=2.7979;MQ=12.78;MQ0=105;MQRankSum=0.757;QD=0.95;ReadPosRankSum=1.964;SNPEFF_AMINO_ACID_CHANGE=S2184N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:164,81:250:99:266,0,726
1    152187562    rs61814936    A    C    999.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8613;MQ=10.3;MQ0=108;QD=4.0;SNPEFF_AMINO_ACID_CHANGE=H2181Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:2,246:250:99:1033,137,0
1    152187810    rs145371085    G    A    105.59    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DB;DP=122;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=8.07;MQ0=89;MQRankSum=-2.849;QD=0.87;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=P2099S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:3,119:122:0.20:134,0,0
1    152187935    rs61814938    C    T    101.98    MQFilter40;QDFilter2    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7333;MQ=14.56;MQ0=99;MQRankSum=-4.207;QD=0.41;ReadPosRankSum=-1.199;SNPEFF_AMINO_ACID_CHANGE=R2057Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:172,77:250:99:132,0,1231
1    152187945    rs61814939    C    T    326.96    MQFilter40;QDFilter2    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=250;DS;Dels=0.0;FS=7.258;HRun=0;HaplotypeScore=1.445;MQ=16.36;MQ0=86;MQRankSum=-0.608;QD=1.31;ReadPosRankSum=-1.357;SNPEFF_AMINO_ACID_CHANGE=G2054S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:145,105:250:99:357,0,861
1    152188109    rs61814940    T    A    661.15    MQFilter40    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=250;DS;Dels=0.0;FS=19.457;HRun=0;HaplotypeScore=10.2932;MQ=15.43;MQ0=81;MQRankSum=0.525;QD=2.64;ReadPosRankSum=-0.481;SNPEFF_AMINO_ACID_CHANGE=Q1999L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:156,94:250:99:691,0,977
1    152188176    rs147618491    G    A    171.34    MQFilter40;QDFilter2    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=2.876;DB;DP=250;DS;Dels=0.0;FS=0.771;HRun=0;HaplotypeScore=5.5009;MQ=23.85;MQ0=40;MQRankSum=-1.492;QD=0.69;ReadPosRankSum=1.694;SNPEFF_AMINO_ACID_CHANGE=R1977C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:182,66:250:99:201,0,3826
1    152188319    .    C    T    231.23    MQFilter40;QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DP=250;DS;Dels=0.0;FS=5.472;HRun=0;HaplotypeScore=1.6281;MQ=29.69;MQ0=17;MQRankSum=0.156;QD=0.92;ReadPosRankSum=-0.465;SNPEFF_AMINO_ACID_CHANGE=G1929D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:218,32:250:99:261,0,4835
1    152188463    rs61814941    G    A    889.29    MQFilter40    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.583;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7912;MQ=33.13;MQ0=8;MQRankSum=1.314;QD=3.56;ReadPosRankSum=0.109;SNPEFF_AMINO_ACID_CHANGE=S1881F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:186,64:250:99:919,0,4948
1    152188964    rs78582525    C    T    270.96    MQFilter40;QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=0.468;DB;DP=250;DS;Dels=0.0;FS=0.801;HRun=1;HaplotypeScore=2.96;MQ=14.7;MQ0=118;MQRankSum=0.812;QD=1.08;ReadPosRankSum=-0.536;SNPEFF_AMINO_ACID_CHANGE=S1714N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:207,43:250:99:301,0,2076
1    152188998    rs80018286    C    T    201.52    MQFilter40;QDFilter2    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=3.35;DB;DP=250;DS;Dels=0.0;FS=2.016;HRun=0;HaplotypeScore=0.0;MQ=13.55;MQ0=138;MQRankSum=1.044;QD=0.81;ReadPosRankSum=1.291;SNPEFF_AMINO_ACID_CHANGE=G1703S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:197,52:250:99:232,0,1732
1    152190720    rs7514457    C    T    170.10    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.09;MQ0=223;QD=0.68;SNPEFF_AMINO_ACID_CHANGE=G1129S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:206,43:250:23.94:203,24,0
1    152190880    .    G    A    2448.94    MQFilter40    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.051;DP=250;DS;Dels=0.0;FS=1.123;HRun=0;HaplotypeScore=4.414;MQ=32.23;MQ0=36;MQRankSum=0.663;QD=9.8;ReadPosRankSum=1.34;SNPEFF_AMINO_ACID_CHANGE=T1075;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    0/1:136,113:250:99:2479,0,2278
1    152191709    rs6662450    C    G    2078.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.848;MQ=60.0;MQ0=0;MQRankSum=1.675;QD=33.52;ReadPosRankSum=-1.619;SNPEFF_AMINO_ACID_CHANGE=S799T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:1,60:62:99:2111,134,0
1    152191879    rs10788828    G    A    4605.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=133;Dels=0.0;FS=2.876;HRun=0;HaplotypeScore=2.453;MQ=59.64;MQ0=0;MQRankSum=-0.083;QD=34.63;ReadPosRankSum=-0.786;SNPEFF_AMINO_ACID_CHANGE=H742;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:2,131:133:99:4605,276,0
1    152192114    rs7520249    C    T    6180.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.212;DB;DP=188;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.065;MQ=55.41;MQ0=3;MQRankSum=4.478;QD=32.88;ReadPosRankSum=3.285;SNPEFF_AMINO_ACID_CHANGE=R664Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:10,178:188:99:6181,463,0
1    152192293    rs7520375    C    T    6149.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=211;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7851;MQ=41.31;MQ0=0;QD=29.14;SNPEFF_AMINO_ACID_CHANGE=S604;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,210:211:99:6149,505,0
1    152192631    rs6587647    C    T    7616.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=215;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.0846;MQ=59.14;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=G492R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,214:215:99:7616,554,0
1    152192687    rs6587648    T    C    5838.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=59.33;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=E473G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,177:178:99:5839,445,0
1    152192825    rs6666097    C    T    2322.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=36.28;SNPEFF_AMINO_ACID_CHANGE=G427D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,63:64:99:2355,181,0
1    152192978    rs6587649    T    C    3433.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=Q376R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3434,265,0
1    152193052    rs6587650    A    G    3016.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.55;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=H351;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3049,232,0
1    152193121    rs6587651    G    T    3107.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=59.45;MQ0=0;QD=37.0;SNPEFF_AMINO_ACID_CHANGE=G328;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3141,241,0
1    152193286    rs7545406    G    T    7934.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=235;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3622;MQ=59.41;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=H273Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,235:235:99:7935,590,0
1    152193291    rs6587652    G    T    8017.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=234;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.4955;MQ=59.41;MQ0=0;QD=34.26;SNPEFF_AMINO_ACID_CHANGE=R272;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,234:234:99:8018,602,0
1    152193544    rs7535536    A    G    2866.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.83;SNPEFF_AMINO_ACID_CHANGE=H187;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2900,223,0
1    152193547    rs6587653    G    A    2792.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.91;SNPEFF_AMINO_ACID_CHANGE=S186;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2826,220,0
1    152193851    rs11204937    C    T    1860.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.98;SNPEFF_AMINO_ACID_CHANGE=R85H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152184558_152193966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1894,144,0
1    152193990    rs11204938    A    G    1267.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1300,99,0
1    152195728    rs80268284    AT    A    1077.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=11;HaplotypeScore=134.6001;IndelType=D;MQ=59.71;MQ0=0;QD=21.13;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_152195592_152195754;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:3,46:51:99:1120,139,0
1    152195851    rs71714598    TAGTC    T    234.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=33.2338;IndelType=D;MQ=51.77;MQ0=0;QD=39.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368801    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:276,15,0
1    152278434    rs61816760    T    G    76.66    MQFilter40;QDFilter2    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.46;MQ0=237;MQRankSum=0.533;QD=0.31;ReadPosRankSum=0.696;SNPEFF_AMINO_ACID_CHANGE=E2976D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152274651_152287223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368799    GT:AD:DP:GQ:PL    0/1:136,114:250:99:107,0,198
1    152279406    rs192116923    T    G    73.77    MQFilter40;QDFilter2    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.44;MQ0=240;MQRankSum=-1.447;QD=0.3;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=E2652D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152274651_152287223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368799    GT:AD:DP:GQ:PL    0/1:153,96:249:99:104,0,194
1    152280014    .    A    G    2022.41    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.825;DP=145;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4725;MQ=56.03;MQ0=0;MQRankSum=2.056;QD=13.95;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=S2450P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152274651_152287223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368799    GT:AD:DP:GQ:PL    0/1:74,70:145:99:2052,0,2370
1    152287341    rs67992390    C    CT    93.92    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=17;FS=0.0;HRun=12;HaplotypeScore=57.7439;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=-0.377;QD=5.52;ReadPosRankSum=-1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368799    GT:AD:DP:GQ:PL    0/1:10,6:17:99:133,0,99
1    152384498    rs3215709    G    GT    608.41    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.354;DB;DP=42;FS=1.67;HRun=0;HaplotypeScore=96.9282;IndelType=I;MQ=60.26;MQ0=0;MQRankSum=0.704;QD=14.49;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271835    GT:AD:DP:GQ:PL    0/1:26,16:42:99:647,0,887
1    152384833    rs1923492    T    C    234.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.355;QD=15.6;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271835    GT:AD:DP:GQ:PL    0/1:6,9:15:99:264,0,213
1    152484129    rs2105117    G    A    1008.36    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=77;Dels=0.0;FS=0.884;HRun=0;HaplotypeScore=0.9665;MQ=53.7;MQ0=0;MQRankSum=0.8;QD=13.1;ReadPosRankSum=-2.474;SNPEFF_AMINO_ACID_CHANGE=C40Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152483990_152484653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCE5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334269    GT:AD:DP:GQ:PL    0/1:40,37:77:99:1038,0,1123
1    152487979    rs2282296    C    T    243.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.15;QD=15.22;ReadPosRankSum=1.22;SNPEFF_AMINO_ACID_CHANGE=C40;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152487838_152488486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRCT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368790    GT:AD:DP:GQ:PL    0/1:8,8:16:99:273,0,192
1    152488063    rs1053588    C    T    109.56    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=12.17;ReadPosRankSum=1.307;SNPEFF_AMINO_ACID_CHANGE=R68;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152487838_152488486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRCT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368790    GT:AD:DP:GQ:PL    0/1:4,5:9:99:140,0,125
1    152538358    rs17659359    G    C    519.02    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.514;DB;DP=54;Dels=0.0;FS=1.128;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.618;QD=9.61;ReadPosRankSum=-0.278;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCE3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368789    GT:AD:DP:GQ:PL    0/1:34,20:54:99:549,0,1012
1    152538636    .    G    A    875.54    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.756;DP=61;Dels=0.0;FS=2.342;HRun=0;HaplotypeScore=1.9157;MQ=57.91;MQ0=0;MQRankSum=-0.299;QD=14.35;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=P17S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152538130_152538705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCE3E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368789    GT:AD:DP:GQ:PL    0/1:25,35:61:99:906,0,738
1    152552461    rs4845313    C    A    1661.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6313;MQ=54.96;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCE3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368787    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1695,129,0
1    152681543    rs1332496    T    C    3167.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.02;MQ0=0;QD=30.75;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_152681523_152681910;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335535    GT:AD:DP:GQ:PL    1/1:0,102:103:99:3200,256,0
1    152681680    rs6143428    C    CAGCTCTGGGGGCTGCTGT    6174.53    PASS    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.383;DB;DP=114;FS=3.111;HRun=0;HaplotypeScore=1329.0882;IndelType=I;MQ=54.23;MQ0=0;MQRankSum=-5.734;QD=54.16;ReadPosRankSum=-0.45;SNPEFF_AMINO_ACID_CHANGE=-44SSGGCC;SNPEFF_CODON_CHANGE=-/AGCTCTGGGGGCTGCTGT;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_152681523_152681910;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCE4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335535    GT:AD:DP:GQ:PL    0/1:92,18:114:99:6175,0,7285
1    152732106    rs17612167    A    T    3012.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.2;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=Q14H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152732037_152734529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPRP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368773    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3045,226,0
1    152749091    rs41268480    C    T    2078.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=R82W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152748848_152749445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCE1F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334371    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2112,163,0
1    152760106    rs56313719    G    A    287.98    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=60;Dels=0.0;FS=6.522;HRun=0;HaplotypeScore=0.0;MQ=51.51;MQ0=1;MQRankSum=0.444;QD=4.8;ReadPosRankSum=0.009;SNPEFF_AMINO_ACID_CHANGE=G111S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152759754_152760902;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCE1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368770    GT:AD:DP:GQ:PL    0/1:42,18:60:99:318,0,1208
1    152944156    rs6671520    C    T    832.28    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.192;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.02;QD=25.22;ReadPosRankSum=0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328051    GT:AD:DP:GQ:PL    0/1:9,24:33:99:862,0,273
1    152944594    rs3170863    C    T    621.61    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.574;DB;DP=44;Dels=0.0;FS=1.595;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.376;QD=14.13;ReadPosRankSum=-0.141;SNPEFF_AMINO_ACID_CHANGE=S76;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152944347_152945050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328051    GT:AD:DP:GQ:PL    0/1:23,21:44:99:652,0,776
1    152957573    rs1611760    T    C    320.93    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.531;QD=16.89;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307122    GT:AD:DP:GQ:PL    0/1:9,10:19:99:351,0,285
1    152957832    rs1611762    C    A    1855.36    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.35;DB;DP=130;Dels=0.0;FS=0.663;HRun=1;HaplotypeScore=2.8047;MQ=58.64;MQ0=0;MQRankSum=-0.708;QD=14.27;ReadPosRankSum=1.861;SNPEFF_AMINO_ACID_CHANGE=H42Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152957688_152958289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRR1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307122    GT:AD:DP:GQ:PL    0/1:56,74:130:99:1885,0,1590
1    152957887    rs1611764    G    A    1797.48    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.553;DB;DP=103;Dels=0.0;FS=1.723;HRun=0;HaplotypeScore=1.4679;MQ=59.1;MQ0=0;MQRankSum=1.868;QD=17.45;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=V61I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_152957688_152958289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRR1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307122    GT:AD:DP:GQ:PL    0/1:39,64:103:99:1827,0,1093
1    153190590    rs71582293    G    GT    910.05    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.625;DB;DP=68;FS=0.0;HRun=7;HaplotypeScore=152.1867;IndelType=I;MQ=60.48;MQ0=0;MQRankSum=0.917;QD=13.38;ReadPosRankSum=-1.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368744    GT:AD:DP:GQ:PL    0/1:36,32:68:99:949,0,787
1    153233488    .    C    CGGCGGT    548.38    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.586;DP=19;FS=0.0;HRun=0;HaplotypeScore=94.8996;IndelType=I;MQ=52.89;MQ0=0;MQRankSum=-2.489;QD=28.86;ReadPosRankSum=1.122;SNPEFF_AMINO_ACID_CHANGE=-22GG;SNPEFF_CODON_CHANGE=-/GGCGGT;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_1_153233403_153234598;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368742    GT:AD:DP:GQ:PL    0/1:12,7:19:99:587,0,556
1    153233578    rs1143389    C    T    111.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=54.65;MQ0=0;MQRankSum=0.361;QD=12.43;ReadPosRankSum=-2.219;SNPEFF_AMINO_ACID_CHANGE=C51;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153233403_153234598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368742    GT:AD:DP:GQ:PL    0/1:5,4:9:71.71:142,0,72
1    153234295    rs12043009    G    A    107.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.39;MQ0=0;MQRankSum=0.437;QD=8.28;ReadPosRankSum=1.67;SNPEFF_AMINO_ACID_CHANGE=E290K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153234112_153234593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392652    GT:AD:DP:GQ:PL    0/1:8,5:13:99:138,0,266
1    153283004    rs821423    C    T    4999.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290722    GT:AD:DP:GQ:PL    1/1:0,135:135:99:5000,373,0
1    153283179    rs3006473    A    G    3121.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=59.74;MQ0=0;QD=35.88;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_153283087_153283194;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290722    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3155,235,0
1    153309754    rs184556258    G    A    611.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.671;DB;DP=36;Dels=0.0;FS=3.39;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.321;QD=17.0;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=G278;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153309657_153309775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368739    GT:AD:DP:GQ:PL    0/1:16,20:36:99:642,0,505
1    153309981    rs12139503    G    A    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359650    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    153312644    rs2771122    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490266    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    153313912    rs3014859    A    G    309.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490266    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:343,27,0
1    153314153    rs3006448    C    A    2571.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=G188V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153314103_153314255;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368739    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2604,199,0
1    153314347    rs3006449    C    T    368.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490266    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:402,30,0
1    153315467    rs5777858    T    TAAG    1291.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=63.6346;IndelType=I;MQ=54.18;MQ0=0;QD=61.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490266    GT:AD:DP:GQ:PL    1/1:3,17:21:60.21:1334,60,0
1    153315579    rs3014863    A    G    1600.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.19;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=F149;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153315566_153315684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368739    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1634,132,0
1    153315784    rs1865234    T    C    526.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490266    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:560,42,0
1    153320334    rs3006457    T    C    764.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359650    GT:AD:DP:GQ:PL    1/1:0,26:26:60.19:798,60,0
1    153320372    rs3006458    T    G    1218.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_AMINO_ACID_CHANGE=I13L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153320360_153320454;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359650    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1251,93,0
1    153320581    rs3006459    T    C    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359650    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    153411371    rs111530393    T    C    107.18    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=10.72;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A7L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368724    GT:AD:DP:GQ:PL    0/1:3,7:10:99:137,0,105
1    153431406    rs3014837    C    G    1293.66    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.818;DB;DP=101;Dels=0.0;FS=6.352;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.587;QD=12.81;ReadPosRankSum=-0.725;SNPEFF_AMINO_ACID_CHANGE=E28D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153431349_153431506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368722    GT:AD:DP:GQ:PL    0/1:53,48:101:99:1324,0,1703
1    153509892    rs2248745    A    G    477.21    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.436;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-2.014;QD=8.09;ReadPosRankSum=1.354;SNPEFF_AMINO_ACID_CHANGE=D53;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153509633_153509912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368717    GT:AD:DP:GQ:PL    0/1:36,23:59:99:507,0,1088
1    153512347    rs4017737    A    G    64.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.83;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354332    GT:AD:DP:GQ:PL    0/1:2,3:5:65.60:94,0,66
1    153517092    rs138957616    GC    G    615.12    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=4.495;DB;DP=46;FS=2.527;HRun=4;HaplotypeScore=139.6283;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.505;QD=13.37;ReadPosRankSum=-0.223;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:28,18:46:99:654,0,792
1    153517172    rs1050923    T    C    829.17    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.644;DB;DP=64;Dels=0.0;FS=2.234;HRun=0;HaplotypeScore=0.9999;MQ=59.35;MQ0=0;MQRankSum=1.387;QD=12.96;ReadPosRankSum=1.468;SNPEFF_AMINO_ACID_CHANGE=E22;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153517130_153517285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545360    GT:AD:DP:GQ:PL    0/1:36,28:64:99:859,0,1055
1    153520138    rs41265162    C    T    651.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=14.8;ReadPosRankSum=1.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368714    GT:AD:DP:GQ:PL    0/1:22,22:44:99:681,0,707
1    153520203    rs41265164    G    A    1011.20    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=4.514;DB;DP=88;Dels=0.0;FS=6.091;HRun=0;HaplotypeScore=0.7887;MQ=59.53;MQ0=0;MQRankSum=1.031;QD=11.49;ReadPosRankSum=-0.526;SNPEFF_AMINO_ACID_CHANGE=H87;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153519989_153520322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:50,38:88:99:1041,0,1258
1    153520400    rs56089062    T    C    159.65    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.194;DB;DP=26;Dels=0.0;FS=5.119;HRun=2;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=-0.25;QD=6.14;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:18,8:26:99:190,0,668
1    153520520    rs56350425    T    C    118.23    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.65;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:148,0,27
1    153520714    rs112623078    T    TC    345.24    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=27;FS=9.455;HRun=5;HaplotypeScore=106.8228;IndelType=I;MQ=59.55;MQ0=0;MQRankSum=0.882;QD=12.79;ReadPosRankSum=0.104;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:16,11:27:99:384,0,462
1    153520784    rs28718953    C    A    703.20    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.927;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.98;MQ0=0;MQRankSum=1.46;QD=13.79;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:23,28:51:99:733,0,785
1    153520790    rs28594230    G    C    720.98    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=57.04;MQ0=0;MQRankSum=-0.142;QD=13.86;ReadPosRankSum=0.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:23,29:52:99:751,0,705
1    153520804    rs28452456    A    G    806.06    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=64;Dels=0.0;FS=2.504;HRun=2;HaplotypeScore=0.7887;MQ=57.98;MQ0=0;MQRankSum=0.103;QD=12.59;ReadPosRankSum=1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:34,30:64:99:836,0,1032
1    153520954    rs36022742    C    T    1340.19    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=5.208;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6971;MQ=58.97;MQ0=0;MQRankSum=-0.514;QD=14.89;ReadPosRankSum=1.756;SNPEFF_AMINO_ACID_CHANGE=R3K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153520821_153520966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:43,46:90:99:1370,0,1253
1    153521018    rs28548347    A    C    284.82    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.349;DB;DP=28;Dels=0.0;FS=3.332;HRun=6;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.23;QD=10.17;ReadPosRankSum=-0.875;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368712    GT:AD:DP:GQ:PL    0/1:15,13:28:99:315,0,505
1    153533898    rs8401    A    G    1830.22    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=2.295;DB;DP=135;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.1415;MQ=59.55;MQ0=0;MQRankSum=0.61;QD=13.56;ReadPosRankSum=1.793;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487430    GT:AD:DP:GQ:PL    0/1:67,68:135:99:1860,0,2056
1    153534027    rs1047325    C    T    2693.77    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.266;DB;DP=192;Dels=0.0;FS=4.219;HRun=1;HaplotypeScore=1.8499;MQ=59.4;MQ0=0;MQRankSum=-0.586;QD=14.03;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=S102N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153533825_153534067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368707    GT:AD:DP:GQ:PL    0/1:102,90:192:99:2724,0,3091
1    153534150    rs189082738    G    A    793.95    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.82;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.273;QD=15.27;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368707    GT:AD:DP:GQ:PL    0/1:26,25:52:99:824,0,852
1    153587256    rs11548102    A    T    254.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=S100A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339556    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:288,24,0
1    153587308    rs11548104    C    T    712.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=S100A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339556    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:745,57,0
1    153588208    rs9792963    G    A    139.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=S100A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339556    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:172,15,0
1    153588279    rs9792967    G    A    350.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=S100A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339556    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:384,30,0
1    153591652    rs9726753    G    A    1236.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=S100A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339556    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1269,96,0
1    153591770    rs9330299    T    C    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=S100A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
1    153600778    rs3806233    G    A    129.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=S100A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469931    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
1    153602861    rs3790411    G    C    133.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=S100A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469931    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    153604029    rs1046379    C    T    4092    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=128;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.312;MQ=60.0;MQ0=0;MQRankSum=-0.341;QD=31.97;ReadPosRankSum=-0.341;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436839    GT:AD:DP:GQ:PL    1/1:1,127:128:99:4092,295,0
1    153604112    rs1046381    G    A    7046.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=212;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;QD=33.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436839    GT:AD:DP:GQ:PL    1/1:0,210:212:99:7046,551,0
1    153604422    rs1128894    T    C    199.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368696    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
1    153609039    rs4845557    T    C    1661.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=31.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292169    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1694,132,0
1    153615820    rs74844193    G    A    784.64    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=46;Dels=0.0;FS=2.893;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.112;QD=17.06;ReadPosRankSum=0.067;SNPEFF_AMINO_ACID_CHANGE=R149H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153615703_153615840;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHTOP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368687    GT:AD:DP:GQ:PL    0/1:19,27:46:99:815,0,559
1    153617773    rs11680    C    G    219.14    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=2.372;QD=14.61;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHTOP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368686    GT:AD:DP:GQ:PL    0/1:8,7:15:99:249,0,278
1    153635425    rs3795396    G    A    1145.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368681    GT:AD:DP:GQ:PL    1/1:0,31:32:90.26:1179,90,0
1    153636472    .    T    TACC    621.92    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=67.881;IndelType=I;MQ=66.64;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368681    GT:AD:DP:GQ:PL    1/1:3,13:17:49.52:664,50,0
1    153636860    rs4351684    A    G    2120.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.791;MQ=59.65;MQ0=0;QD=32.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368681    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2154,166,0
1    153637617    rs3862047    G    A    806.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368681    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:840,63,0
1    153640665    rs10797096    G    A    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361891    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    153642835    rs6663046    G    C    161.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361891    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
1    153656352    rs9662664    T    G    877.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368680    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:911,66,0
1    153656405    rs75462208    C    G    611.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368680    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:644,48,0
1    153660514    rs13305999    AC    A    968.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=7;HaplotypeScore=90.5661;IndelType=D;MQ=60.63;MQ0=0;QD=28.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368680    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1010,99,0
1    153661374    rs67655025    CG    C    1438.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=2;HaplotypeScore=161.3131;IndelType=D;MQ=58.29;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368680    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1480,114,0
1    153665919    rs5777879    T    TC    1480.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=3;HaplotypeScore=110.9203;IndelType=I;MQ=59.35;MQ0=0;QD=37.96;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368677    GT:AD:DP:GQ:PL    1/1:2,37:39:99:1523,111,0
1    153743317    rs4345834    G    A    286.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318967    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
1    153752152    rs143554513    GCT    G    307.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=27.3061;IndelType=D;MQ=58.46;MQ0=0;QD=38.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461269    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:350,24,0
1    153790501    rs4363451    C    T    7031.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=235;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2869;MQ=59.35;MQ0=0;MQRankSum=-0.328;QD=29.92;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368655    GT:AD:DP:GQ:PL    1/1:1,234:235:99:7032,506,0
1    153904574    rs11264620    T    C    163.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DENND4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368646    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
1    153906397    rs11264621    A    G    1165.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DENND4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477746    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1199,90,0
1    153907278    rs3835302    CCTGCTGCTG    C    2919.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=601.8626;IndelType=D;MQ=54.47;MQ0=0;QD=45.62;SNPEFF_AMINO_ACID_CHANGE=QQQ908-;SNPEFF_CODON_CHANGE=cagcagcag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_1_153907236_153907440;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DENND4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361217    GT:AD:DP:GQ:PL    1/1:17,47:64:99:2962,141,0
1    153908309    rs11586075    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DENND4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485359    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    153909069    rs1043608    G    C    1153.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=A796;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153909018_153909224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DENND4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361217    GT:AD:DP:GQ:PL    1/1:0,33:33:93.28:1186,93,0
1    153913699    rs1110165    T    G    422.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DENND4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464048    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:455,33,0
1    153913770    rs2252508    A    G    555.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DENND4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464048    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:589,48,0
1    153920564    rs10559    A    G    790.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRTC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467860    GT:AD:DP:GQ:PL    1/1:0,27:27:63.20:824,63,0
1    153921483    rs111395902    AC    A    570.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=4;HaplotypeScore=47.6525;IndelType=D;MQ=58.9;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRTC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467860    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:612,51,0
1    153926078    rs11264680    T    C    256.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_AMINO_ACID_CHANGE=M147V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153926014_153926082;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRTC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368633    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:289,21,0
1    153927270    rs10908558    T    C    633.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;QD=28.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310483    GT:AD:DP:GQ:PL    1/1:0,22:22:51.15:666,51,0
1    153941514    rs11264743    C    T    1923    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=P75S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153941406_153941652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CREB3L4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368600    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1956,150,0
1    153954674    rs10908578    T    C    1409.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484297    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1442,114,0
1    153963983    rs114120114    A    G    462.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.87;MQ0=0;QD=33.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:496,42,0
1    153963995    .    A    AAG    1404.76    PASS    AC=2;AF=1.00;AN=2;DP=27;FS=0.0;HRun=0;HaplotypeScore=104.4385;IndelType=I;MQ=53.4;MQ0=0;QD=52.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1447,81,0
1    153964396    rs67468611    C    CAA    1871.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=72.694;IndelType=I;MQ=59.02;MQ0=0;QD=56.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:1,32:33:99:1914,99,0
1    153994647    rs11264875    C    T    2491.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.02;MQ0=0;QD=35.09;SNPEFF_AMINO_ACID_CHANGE=V1491I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_153994602_153994819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2525,187,0
1    154027381    rs3834774    AT    A    204.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=44.8497;IndelType=D;MQ=58.55;MQ0=0;QD=12.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:4,12:16:35.70:247,36,0
1    154029450    rs11264964    G    C    590.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:623,48,0
1    154061855    rs2066135    T    G    3166.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.74;MQ0=0;QD=36.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3199,232,0
1    154062342    rs10908691    C    T    33.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
1    154091017    rs6661101    G    C    789.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=39.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:822,60,0
1    154108387    rs3001361    G    A    1512.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=N304;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154108290_154108448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1545,114,0
1    154110733    rs75102309    GA    G    1136.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DB;DP=57;FS=0.0;HRun=11;HaplotypeScore=158.9097;IndelType=D;MQ=59.79;MQ0=0;MQRankSum=-0.034;QD=19.93;ReadPosRankSum=1.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    1/1:8,48:57:99:1178,120,0
1    154112167    rs2500223    A    C    618.15    PASS    AB=0.179;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.12;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9658;MQ=59.17;MQ0=0;MQRankSum=0.0;QD=22.08;ReadPosRankSum=0.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271854    GT:AD:DP:GQ:PL    0/1:5,23:28:28.26:648,0,28
1    154127100    rs4400599    T    C    121.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271850    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
1    154141908    rs4845364    A    G    490.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368527    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:523,39,0
1    154179679    rs6719    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368516    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    154186918    rs12408458    G    C    1869.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350592    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1903,138,0
1    154192463    rs71584183    G    GT    405.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;DB;DP=19;FS=0.0;HRun=10;HaplotypeScore=46.9195;IndelType=I;MQ=63.87;MQ0=0;MQRankSum=1.085;QD=21.35;ReadPosRankSum=1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350592    GT:AD:DP:GQ:PL    1/1:4,15:19:23.61:448,24,0
1    154208877    rs3762339    A    G    210.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441890    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
1    154218550    rs71584185    CT    C    138.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=12.1361;IndelType=D;MQ=60.0;MQ0=0;QD=27.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412596    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:180,15,0
1    154218639    rs4040743    TTCAG    T    1916.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=190.7322;IndelType=D;MQ=52.27;MQ0=1;QD=51.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412596    GT:AD:DP:GQ:PL    1/1:0,37:36:99:1959,105,0
1    154227239    rs1194604    C    A    523.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.92;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466173    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:556,42,0
1    154227292    rs71584188    G    GT    663.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.325;DB;DP=40;FS=0.0;HRun=14;HaplotypeScore=304.5472;IndelType=I;MQ=56.46;MQ0=0;MQRankSum=1.083;QD=16.58;ReadPosRankSum=-0.975;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466173    GT:AD:DP:GQ:PL    1/1:7,28:40:75.35:705,75,0
1    154228287    rs1194603    T    C    1719.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.543;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5541;MQ=59.19;MQ0=0;MQRankSum=1.606;QD=30.16;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466173    GT:AD:DP:GQ:PL    1/1:1,56:57:99:1752,144,0
1    154241698    .    C    T    112.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.02;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271877    GT:AD:DP:GQ:PL    0/1:3,4:7:99:142,0,105
1    154305010    rs1209264    A    G    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368490    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    154306330    rs111396506    C    CA    368.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=67.0976;IndelType=I;MQ=49.96;MQ0=0;QD=36.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368490    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:411,30,0
1    154306334    rs56699544    C    A    59.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=5.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368490    GT:AD:DP:GQ:PL    1/1:0,10:10:11.95:92,12,0
1    154310048    rs1760795    C    G    2951.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=L354;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154309824_154310322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368487    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2984,220,0
1    154313232    rs1194588    T    C    661.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368487    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:694,51,0
1    154317153    rs1194587    C    T    2683.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=S759;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154317117_154317261;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368489    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2716,199,0
1    154317418    rs1194586    T    C    897.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341822    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:930,69,0
1    154318564    rs1194585    G    A    420.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=58.45;MQ0=0;QD=28.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341822    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:453,36,0
1    154321072    rs1194591    A    G    698.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368489    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:731,54,0
1    154351199    rs34437053    G    A    1033.06    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=1.869;DB;DP=74;Dels=0.0;FS=6.227;HRun=1;HaplotypeScore=2.3724;MQ=57.71;MQ0=0;MQRankSum=0.385;QD=13.96;ReadPosRankSum=-1.271;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-350G8.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437336    GT:AD:DP:GQ:PL    0/1:39,35:74:99:1063,0,1017
1    154351247    rs57100877    C    G    917.12    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.483;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=57.32;MQ0=0;MQRankSum=0.339;QD=13.69;ReadPosRankSum=0.238;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-350G8.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437336    GT:AD:DP:GQ:PL    0/1:37,30:67:99:947,0,952
1    154351277    rs60767732    G    T    866.06    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.961;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=57.18;MQ0=0;MQRankSum=0.595;QD=12.03;ReadPosRankSum=0.23;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-350G8.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437336    GT:AD:DP:GQ:PL    0/1:40,32:72:99:896,0,1152
1    154351304    rs60682501    A    G    937.89    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.563;DB;DP=79;Dels=0.0;FS=0.872;HRun=0;HaplotypeScore=2.7276;MQ=57.55;MQ0=0;MQRankSum=0.927;QD=11.87;ReadPosRankSum=-0.552;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-350G8.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437336    GT:AD:DP:GQ:PL    0/1:43,36:79:99:968,0,1203
1    154351323    rs60412881    T    C    1127.55    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=3.636;DB;DP=89;Dels=0.0;FS=0.834;HRun=2;HaplotypeScore=0.0;MQ=53.65;MQ0=0;MQRankSum=0.06;QD=12.67;ReadPosRankSum=-1.339;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-350G8.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437336    GT:AD:DP:GQ:PL    0/1:45,44:89:99:1158,0,1329
1    154401972    rs6694817    T    C    202.22    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=14.44;ReadPosRankSum=2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344086    GT:AD:DP:GQ:PL    0/1:5,9:14:99:232,0,174
1    154407419    rs7518199    A    C    160.29    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=54.44;MQ0=0;MQRankSum=-1.932;QD=12.33;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512471    GT:AD:DP:GQ:PL    0/1:5,8:13:99:190,0,160
1    154407713    rs7521458    T    C    35.82    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=2.76;ReadPosRankSum=-0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512471    GT:AD:DP:GQ:PL    0/1:9,3:13:65.81:66,0,335
1    154408340    rs4845371    T    C    138.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512471    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:171,12,0
1    154426970    rs2228145    A    C    222.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.119;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.413;QD=12.33;ReadPosRankSum=-0.618;SNPEFF_AMINO_ACID_CHANGE=D358A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154426964_154427057;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368485    GT:AD:DP:GQ:PL    0/1:9,9:18:99:252,0,266
1    154437896    rs2229238    T    C    496.03    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.711;DB;DP=51;Dels=0.0;FS=3.039;HRun=0;HaplotypeScore=2.5771;MQ=60.0;MQ0=0;MQRankSum=-0.984;QD=9.73;ReadPosRankSum=-1.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502679    GT:AD:DP:GQ:PL    0/1:32,19:51:99:526,0,986
1    154458932    rs4845632    A    G    1114.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304760    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1148,84,0
1    154459197    rs4845633    C    G    865.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304760    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:898,69,0
1    154473726    rs6683078    G    A    213.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304760    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:246,18,0
1    154474131    rs4845635    C    G    385.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.54;SNPEFF_AMINO_ACID_CHANGE=R124;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154473912_154474589;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304760    GT:AD:DP:GQ:PL    1/1:0,14:14:36.08:419,36,0
1    154479657    rs10654618    C    CAT    1116.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=66.8075;IndelType=I;MQ=56.21;MQ0=0;QD=58.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    1/1:0,19:19:57.20:1159,57,0
1    154479670    rs6664608    C    T    175.30    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=23;Dels=0.0;FS=2.793;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.84;QD=7.62;ReadPosRankSum=0.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    0/1:15,8:23:99:205,0,500
1    154481158    rs7513603    T    C    125.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
1    154492702    rs10908842    G    A    252.03    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.847;DB;DP=16;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-1.905;QD=15.75;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    0/1:7,9:16:99:282,0,242
1    154493721    rs6684225    T    C    1619.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1652,123,0
1    154494082    rs4269769    G    C    564.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=26.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    1/1:0,21:21:54.10:598,54,0
1    154515193    rs58881140    C    T    409.17    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=30;Dels=0.0;FS=6.271;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.062;QD=13.64;ReadPosRankSum=0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    0/1:14,16:30:99:439,0,489
1    154516477    rs12750774    G    A    1229.84    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=78;Dels=0.0;FS=3.377;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.553;QD=15.77;ReadPosRankSum=-1.585;SNPEFF_AMINO_ACID_CHANGE=R181Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154516439_154516586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    0/1:34,44:78:99:1260,0,1019
1    154516571    rs6678164    T    C    1220.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_AMINO_ACID_CHANGE=A212;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154516439_154516586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1253,93,0
1    154516578    rs3811448    G    A    291.05    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.77;DB;DP=30;Dels=0.0;FS=5.764;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.562;QD=9.7;ReadPosRankSum=-1.166;SNPEFF_AMINO_ACID_CHANGE=V215I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154516439_154516586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    0/1:20,10:30:99:321,0,594
1    154517217    rs6681207    T    C    109.73    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=9.98;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292211    GT:AD:DP:GQ:PL    0/1:6,5:11:99:140,0,178
1    154517504    rs3811449    G    A    267.50    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.868;DB;DP=22;Dels=0.0;FS=6.56;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.352;QD=12.16;ReadPosRankSum=-0.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462871    GT:AD:DP:GQ:PL    0/1:10,12:22:99:297,0,363
1    154519800    rs113168174    C    CA    134.78    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.055;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=54.6599;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=7.49;ReadPosRankSum=1.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462871    GT:AD:DP:GQ:PL    0/1:13,5:18:99:174,0,417
1    154523215    rs4520411    C    T    294.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
1    154523588    rs10908849    T    G    867.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:900,66,0
1    154524973    rs12144146    A    G    698.93    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.445;QD=16.64;ReadPosRankSum=0.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368480    GT:AD:DP:GQ:PL    0/1:18,24:42:99:729,0,553
1    154527672    rs7543174    C    T    194.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292211    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:227,18,0
1    154528086    rs4078519    T    C    506.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292211    GT:AD:DP:GQ:PL    1/1:0,19:19:48.11:539,48,0
1    154541971    .    T    G    45.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DP=22;Dels=0.0;FS=7.123;HRun=2;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;MQRankSum=-1.449;QD=2.07;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=V33G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154541938_154542083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368476    GT:AD:DP:GQ:PL    0/1:11,11:22:75.52:76,0,255
1    154557685    rs9427094    C    T    1508.06    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.674;DB;DP=111;Dels=0.0;FS=0.726;HRun=1;HaplotypeScore=2.1375;MQ=59.17;MQ0=0;MQRankSum=-0.159;QD=13.59;ReadPosRankSum=0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530954    GT:AD:DP:GQ:PL    0/1:53,58:111:99:1538,0,1543
1    154561261    rs9427095    G    C    548.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292205    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:581,45,0
1    154561661    rs1542796    C    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292205    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    154561925    rs1127309    C    T    448.71    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9998;MQ=60.0;MQ0=0;MQRankSum=-1.145;QD=13.2;ReadPosRankSum=-1.63;SNPEFF_AMINO_ACID_CHANGE=V599;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154561845_154561938;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368471    GT:AD:DP:GQ:PL    0/1:15,19:34:99:479,0,452
1    154562617    rs3215061    A    AC    32.34    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=27;FS=0.0;HRun=7;HaplotypeScore=336.1371;IndelType=I;MQ=47.66;MQ0=0;MQRankSum=-0.38;QD=1.2;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292205    GT:AD:DP:GQ:PL    0/1:22,5:27:9.98:71,0,10
1    154571174    rs143817514    T    TGGA    695.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=33.8368;IndelType=I;MQ=49.5;MQ0=0;QD=57.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463920    GT:AD:DP:GQ:PL    1/1:1,11:12:33.11:738,33,0
1    154573419    rs3738032    C    T    832.24    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.392;DB;DP=56;Dels=0.0;FS=2.649;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.705;QD=14.86;ReadPosRankSum=1.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471068    GT:AD:DP:GQ:PL    0/1:25,31:56:99:862,0,696
1    154573967    rs2229857    T    C    1276.18    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=97;Dels=0.0;FS=0.82;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.105;QD=13.16;ReadPosRankSum=-0.66;SNPEFF_AMINO_ACID_CHANGE=K379R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154573517_154575102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529168    GT:AD:DP:GQ:PL    0/1:48,49:97:99:1306,0,1635
1    154574820    rs1466731    T    C    1408.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=R100G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154573517_154575102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368474    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1442,111,0
1    154575040    rs1802645    C    T    1700.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=R21;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154573517_154575102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529168    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1734,129,0
1    154575321    rs3738029    G    A    34.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=6.99;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292205    GT:AD:DP:GQ:PL    0/1:3,2:5:64.96:65,0,99
1    154575336    rs4845381    A    G    122.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292205    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
1    154600372    rs6426859    A    G    1217.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.94;MQ0=0;QD=29.68;SNPEFF_AMINO_ACID_CHANGE=S35P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154600331_154600474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292205    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1250,102,0
1    154600533    rs28411375    A    G    635.29    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.376;DB;DP=44;Dels=0.0;FS=3.85;HRun=2;HaplotypeScore=0.0;MQ=58.41;MQ0=0;MQRankSum=0.728;QD=14.44;ReadPosRankSum=-0.611;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292205    GT:AD:DP:GQ:PL    0/1:23,21:44:99:665,0,761
1    154744807    rs1051614    C    G    201.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=16;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=-1.208;QD=12.58;ReadPosRankSum=0.368;SNPEFF_AMINO_ACID_CHANGE=L364;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154744451_154744869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    0/1:8,8:16:99:231,0,242
1    154744852    rs1131820    A    G    446    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_AMINO_ACID_CHANGE=N349;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154744451_154744869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:479,36,0
1    154744937    rs11589471    C    T    49.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.683;QD=5.54;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    0/1:6,3:9:79.86:80,0,180
1    154745031    rs11584403    T    G    75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.5;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,104
1    154794384    rs116831881    C    T    34.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.57;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    0/1:2,2:4:61.75:64,0,62
1    154795277    rs870327    T    G    42.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=7.13;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    0/1:3,3:6:52.61:73,0,53
1    154795389    rs1218598    G    A    366.99    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=0.509;DB;DP=19;Dels=0.0;FS=2.445;HRun=0;HaplotypeScore=0.9578;MQ=59.01;MQ0=0;MQRankSum=-0.602;QD=19.32;ReadPosRankSum=-0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    0/1:5,14:19:99:397,0,145
1    154831925    rs1218587    T    C    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    154832290    rs1061122    C    T    705.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:738,54,0
1    154832322    rs1218586    A    C    662.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271915    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:695,51,0
1    154917701    rs906594    A    G    67.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.6;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368460    GT:AD:DP:GQ:PL    0/1:4,3:7:97.16:97,0,137
1    154987526    rs11264295    C    T    314.89    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=29;Dels=0.0;FS=3.646;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.58;QD=10.86;ReadPosRankSum=1.462;SNPEFF_AMINO_ACID_CHANGE=I130;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154986924_154988290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292176    GT:AD:DP:GQ:PL    0/1:17,12:29:99:345,0,506
1    154988957    rs2242195    A    G    421.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=58.45;MQ0=0;QD=28.07;SNPEFF_AMINO_ACID_CHANGE=P472;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_154988696_154989457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292176    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:454,39,0
1    154995503    rs2242193    G    A    1124.40    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=3.686;DB;DP=80;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.655;QD=14.05;ReadPosRankSum=0.084;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295536    GT:AD:DP:GQ:PL    0/1:37,43:80:99:1154,0,1130
1    155026114    rs6660884    C    T    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295542    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
1    155026871    rs11548311    G    T    754    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=51;Dels=0.0;FS=4.144;HRun=0;HaplotypeScore=0.9469;MQ=59.37;MQ0=0;MQRankSum=0.352;QD=14.78;ReadPosRankSum=-1.879;SNPEFF_AMINO_ACID_CHANGE=S167;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155026790_155026982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271836    GT:AD:DP:GQ:PL    0/1:23,28:51:99:784,0,617
1    155026942    rs6427128    A    C    1337.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=29.72;SNPEFF_AMINO_ACID_CHANGE=K191T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155026790_155026982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271836    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1370,111,0
1    155028522    rs11264302    G    A    1338.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477533    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1371,102,0
1    155030557    rs11264303    A    C    1041.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.121;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.714;QD=29.75;ReadPosRankSum=0.51;SNPEFF_AMINO_ACID_CHANGE=T255;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155030327_155030631;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368410    GT:AD:DP:GQ:PL    1/1:1,34:35:47.63:1074,48,0
1    155033317    rs11264304    T    C    481.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=30.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447332    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:514,42,0
1    155033918    rs41264285    C    T    243.85    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.354;QD=22.17;ReadPosRankSum=-0.825;SNPEFF_AMINO_ACID_CHANGE=P768S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155033894_155033965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449910    GT:AD:DP:GQ:PL    0/1:2,9:11:53.43:274,0,53
1    155057499    rs3766918    A    G    228.96    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6208;MQ=58.45;MQ0=0;MQRankSum=-1.109;QD=15.26;ReadPosRankSum=-2.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368408    GT:AD:DP:GQ:PL    0/1:7,8:15:99:259,0,201
1    155106054    rs4390169    A    G    585.54    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.256;DB;DP=67;Dels=0.0;FS=5.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.917;QD=8.74;ReadPosRankSum=1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368406    GT:AD:DP:GQ:PL    0/1:40,27:67:99:616,0,1357
1    155106227    rs4745    A    T    1221.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.743;DB;DP=90;Dels=0.0;FS=15.531;HRun=0;HaplotypeScore=0.9958;MQ=59.74;MQ0=0;MQRankSum=-0.904;QD=13.58;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=D137V;SNPEFF_CODON_CHANGE=gAc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155106206_155106256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368406    GT:AD:DP:GQ:PL    0/1:45,45:90:99:1252,0,1338
1    155106550    rs9297    A    G    56.10    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.938;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=3.74;ReadPosRankSum=-0.505;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469878    GT:AD:DP:GQ:PL    0/1:12,3:15:86.09:86,0,375
1    155108287    rs11264333    G    A    44.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=6.36;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341298    GT:AD:DP:GQ:PL    0/1:3,4:7:74.51:75,0,80
1    155142210    rs4421576    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTCAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295682    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:80,6,0
1    155152267    .    G    A    150.69    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DP=11;Dels=0.0;FS=2.341;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=13.7;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=G495S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155152108_155152410;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392451    GT:AD:DP:GQ:PL    0/1:5,6:11:99:181,0,129
1    155162067    rs4072037    C    T    936.66    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.815;DB;DP=69;Dels=0.0;FS=1.008;HRun=0;HaplotypeScore=2.8343;MQ=59.33;MQ0=0;MQRankSum=-0.768;QD=13.57;ReadPosRankSum=-0.018;SNPEFF_AMINO_ACID_CHANGE=T22;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155161974_155162074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337604    GT:AD:DP:GQ:PL    0/1:37,32:69:99:967,0,1017
1    155166193    rs74890861    G    A    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428962    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    155167786    rs41264915    A    G    681.63    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.157;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3202;MQ=59.49;MQ0=0;MQRankSum=-0.577;QD=15.15;ReadPosRankSum=-1.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460050    GT:AD:DP:GQ:PL    0/1:21,24:45:99:712,0,699
1    155172725    rs35154152    T    C    331.98    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.425;DB;DP=25;Dels=0.0;FS=1.768;HRun=1;HaplotypeScore=0.9999;MQ=59.25;MQ0=0;MQRankSum=-1.727;QD=13.28;ReadPosRankSum=0.673;SNPEFF_AMINO_ACID_CHANGE=S129G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155172603_155172751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428962    GT:AD:DP:GQ:PL    0/1:11,14:25:99:362,0,345
1    155175892    rs914615    A    G    148.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=14.89;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368378    GT:AD:DP:GQ:PL    0/1:4,6:10:99:179,0,141
1    155178782    rs760077    A    T    135.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=13.56;ReadPosRankSum=-1.036;SNPEFF_AMINO_ACID_CHANGE=T63S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155178588_155179123;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316721    GT:AD:DP:GQ:PL    0/1:4,6:10:52.05:166,0,52
1    155181843    rs2974935    G    T    267.67    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=23;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=0.0;MQ=55.31;MQ0=0;MQRankSum=1.016;QD=11.64;ReadPosRankSum=-0.954;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313929    GT:AD:DP:GQ:PL    0/1:12,11:23:99:298,0,380
1    155181989    rs61738875    G    A    393.40    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=32;Dels=0.0;FS=3.532;HRun=1;HaplotypeScore=0.0;MQ=57.89;MQ0=0;MQRankSum=1.449;QD=12.29;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=E250;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155181918_155182010;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368376    GT:AD:DP:GQ:PL    0/1:17,15:32:99:423,0,521
1    155182164    rs2075570    C    T    533.85    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=53;Dels=0.0;FS=4.367;HRun=0;HaplotypeScore=2.4274;MQ=52.07;MQ0=0;MQRankSum=1.063;QD=10.07;ReadPosRankSum=-1.305;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313929    GT:AD:DP:GQ:PL    0/1:32,21:53:99:564,0,855
1    155184367    rs137953989    G    C    500.25    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.802;DB;DP=75;Dels=0.0;FS=3.803;HRun=0;HaplotypeScore=0.0;MQ=44.57;MQ0=3;MQRankSum=-5.869;QD=6.67;ReadPosRankSum=0.175;SNPEFF_AMINO_ACID_CHANGE=V322;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155184359_155184475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368374    GT:AD:DP:GQ:PL    0/1:39,35:75:99:530,0,1104
1    155184975    rs140081212    A    G    174.38    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=18;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=0.0;MQ=38.2;MQ0=1;MQRankSum=-0.722;QD=9.69;ReadPosRankSum=0.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462587    GT:AD:DP:GQ:PL    0/1:9,9:18:99:204,0,177
1    155186729    rs28445596    T    C    535.41    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.15;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.907;QD=13.06;ReadPosRankSum=0.555;SNPEFF_AMINO_ACID_CHANGE=K105R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155186648_155186820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GBAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313929    GT:AD:DP:GQ:PL    0/1:21,20:41:99:565,0,610
1    155202689    rs10796940    A    C    227.25    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=24;Dels=0.0;FS=17.226;HRun=0;HaplotypeScore=0.0;MQ=55.6;MQ0=0;MQRankSum=0.535;QD=9.47;ReadPosRankSum=-0.661;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327247    GT:AD:DP:GQ:PL    0/1:15,9:24:99:257,0,480
1    155203060    rs56310840    G    A    165.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.792;DB;DP=14;Dels=0.0;FS=15.355;HRun=0;HaplotypeScore=0.0;MQ=46.47;MQ0=0;MQRankSum=0.663;QD=11.81;ReadPosRankSum=0.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327247    GT:AD:DP:GQ:PL    0/1:7,7:14:99:195,0,207
1    155205669    rs28559737    G    T    592.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.73;MQ0=0;QD=29.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460156    GT:AD:DP:GQ:PL    1/1:0,20:20:48.14:626,48,0
1    155206341    rs9628662    T    G    185.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=23.23;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460156    GT:AD:DP:GQ:PL    0/1:2,6:8:56.36:216,0,56
1    155207549    rs762488    T    C    79.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.72;QD=13.23;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460156    GT:AD:DP:GQ:PL    0/1:2,4:6:61.77:109,0,62
1    155207626    rs2009578    G    A    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.43;MQ0=0;QD=17.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460156    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:119,9,0
1    155207733    rs28678003    C    T    169.24    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=11;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=15.39;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467918    GT:AD:DP:GQ:PL    0/1:3,7:11:96.69:199,0,97
1    155208647    rs7416991    T    G    120.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.27;MQ0=1;QD=20.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467918    GT:AD:DP:GQ:PL    1/1:0,4:6:12.04:153,12,0
1    155240681    .    G    C    1012.24    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.789;DP=71;Dels=0.0;FS=3.312;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.581;QD=14.26;ReadPosRankSum=0.167;SNPEFF_AMINO_ACID_CHANGE=R30G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155240599_155240768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355560    GT:AD:DP:GQ:PL    0/1:36,35:71:99:1042,0,1075
1    155294274    rs914616    A    G    603.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=L22;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155293728_155294335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUSC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368347    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:637,54,0
1    155294772    rs4971075    A    G    2309.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.93;MQ0=0;QD=35.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356657    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2343,181,0
1    155313047    rs4971051    T    C    504.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548566    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:538,39,0
1    155408635    rs4971053    T    C    1468.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=T1771A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155408118_155408859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASH1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368346    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1501,120,0
1    155532316    rs12403379    T    C    195.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.13;MQ0=0;QD=21.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548830    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:228,21,0
1    155532325    rs12403380    T    C    202.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548830    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:235,21,0
1    155532332    rs34869594    T    C    173.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548830    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:206,18,0
1    155532341    rs61812107    T    C    205.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=20.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548830    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:239,21,0
1    155581757    rs145150302    A    G    67.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.11;MQ0=1;QD=16.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471209    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:99,9,0
1    155599074    rs137899903    G    T    107.38    MQFilter40    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.299;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.66;MQ0=3;MQRankSum=0.914;QD=5.37;ReadPosRankSum=-1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452804    GT:AD:DP:GQ:PL    0/1:11,9:20:99:137,0,155
1    155618415    rs66792856    CT    C    1673.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=4;HaplotypeScore=132.3411;IndelType=D;MQ=45.81;MQ0=5;QD=21.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452804    GT:AD:DP:GQ:PL    1/1:5,73:52:99:1716,147,0
1    155629483    rs7539    C    G    1762.64    PASS    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=1.556;DB;DP=137;Dels=0.0;FS=10.165;HRun=0;HaplotypeScore=0.5784;MQ=59.86;MQ0=0;MQRankSum=-2.764;QD=12.87;ReadPosRankSum=-0.33;SNPEFF_AMINO_ACID_CHANGE=E586Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155629248_155630704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YY1AP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535662    GT:AD:DP:GQ:PL    0/1:82,55:137:99:1793,0,2414
1    155631307    rs72046156    AACAC    A    216.42    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=174.6219;IndelType=D;MQ=49.74;MQ0=4;MQRankSum=0.143;QD=6.18;ReadPosRankSum=1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452804    GT:AD:DP:GQ:PL    0/1:24,7:30:32.55:255,0,33
1    155697277    .    AG    A    44.75    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=2.462;DP=17;FS=0.0;HRun=1;HaplotypeScore=144.6846;IndelType=D;MQ=49.64;MQ0=0;MQRankSum=-2.462;QD=2.63;ReadPosRankSum=0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462002    GT:AD:DP:GQ:PL    0/1:12,5:17:83.78:84,0,236
1    155724314    .    TG    T    95.13    QDFilter2    AB=0.943;AC=1;AF=0.50;AN=2;BaseQRankSum=4.221;DP=115;FS=13.181;HRun=1;HaplotypeScore=1011.9897;IndelType=D;MQ=49.96;MQ0=0;MQRankSum=-3.347;QD=0.83;ReadPosRankSum=-4.353;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483032    GT:AD:DP:GQ:PL    0/1:108,7:115:99:134,0,974
1    155733257    rs607834    T    C    259.24    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.846;DB;DP=136;Dels=0.0;FS=4.047;HRun=1;HaplotypeScore=0.0;MQ=57.1;MQ0=4;MQRankSum=-2.839;QD=1.91;ReadPosRankSum=-2.442;SNPEFF_AMINO_ACID_CHANGE=P1524;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155733103_155733355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    0/1:115,21:136:99:289,0,3765
1    155737385    rs849712    C    T    599.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.55;MQ0=21;QD=13.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,43:43:54.14:633,54,0
1    155737425    rs5777955    AACAC    A    832.40    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.378;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=238.0717;IndelType=D;MQ=33.48;MQ0=9;MQRankSum=0.213;QD=21.91;ReadPosRankSum=-1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    0/1:14,20:29:99:871,0,257
1    155737482    .    G    A    41.70    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.827;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.95;MQ0=0;MQRankSum=-0.116;QD=1.74;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    0/1:20,4:24:71.69:72,0,726
1    155746340    rs67415527    CT    C    282.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=12;HaplotypeScore=88.2153;IndelType=D;MQ=59.36;MQ0=0;QD=14.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:3,15:19:41.81:325,42,0
1    155753676    rs822019    A    G    394.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467009    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:427,33,0
1    155754117    rs822020    G    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467009    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
1    155755097    rs822021    G    A    1403.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1436,102,0
1    155755239    rs822022    T    C    717.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:751,63,0
1    155774599    rs822016    T    C    203.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=20.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,10:10:18.06:236,18,0
1    155784372    rs822013    G    A    701.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:735,57,0
1    155785578    rs3028172    CAACT    C    869.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=84.0917;IndelType=D;MQ=51.45;MQ0=0;QD=54.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:912,48,0
1    155822971    rs822490    C    T    560.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:593,48,0
1    155823002    rs822491    T    C    888.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:921,69,0
1    155829360    rs1749412    C    A    376.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=31.34;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GON4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271883    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:409,30,0
1    155837865    rs822522    G    C    2052.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=Q48H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155837756_155838582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368324    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2086,153,0
1    155838267    rs822521    T    C    2303    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=H182;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155837756_155838582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368324    GT:AD:DP:GQ:PL    1/1:0,69:70:99:2336,184,0
1    155850558    rs822508    T    C    738.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.485;QD=29.54;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368324    GT:AD:DP:GQ:PL    1/1:1,24:25:33.42:772,33,0
1    155850811    rs822509    G    A    524.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368324    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:557,45,0
1    155870416    rs1749409    G    A    2008.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368322    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2041,166,0
1    155873960    rs1765275    A    G    117.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=19.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368322    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:150,12,0
1    155880573    rs493446    C    G    3076.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=37.98;SNPEFF_AMINO_ACID_CHANGE=E11Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155880447_155880595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368322    GT:AD:DP:GQ:PL    1/1:0,81:81:99:3109,235,0
1    155880760    rs5777961    C    CA    992.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=46.1168;IndelType=I;MQ=60.47;MQ0=0;QD=43.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0907;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368320    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:1034,69,0
1    155891045    rs625658    A    C    354.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0907;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368319    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:387,30,0
1    155899020    rs539602    A    T    816.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0907;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491599    GT:AD:DP:GQ:PL    1/1:0,24:24:72.20:849,72,0
1    155903310    rs4661150    T    C    124.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.48;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0907;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368319    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    155903408    rs4661151    C    T    259.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0907;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368319    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:292,24,0
1    155904177    rs2275079    T    C    562.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=28.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0907;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466713    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:595,45,0
1    155912486    rs2152051    T    C    1136.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=28.4;SNPEFF_AMINO_ACID_CHANGE=L329S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_155911480_155912625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368318    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1169,99,0
1    155924505    rs4661162    A    G    126.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462460    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
1    155928232    rs2364404    T    C    350.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470874    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:384,30,0
1    155928242    rs2886069    C    T    334.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470874    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
1    155931266    rs1964951    T    C    289.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.74;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470874    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
1    155931368    rs4661175    G    A    1041.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=58.79;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470874    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1074,81,0
1    155981489    rs1475766    C    G    2806.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=37.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466905    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2839,217,0
1    156011444    rs2297792    T    C    440.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.37;MQ0=0;QD=36.69;SNPEFF_AMINO_ACID_CHANGE=I148V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156011276_156011462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368307    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:473,36,0
1    156046763    .    G    T    61.80    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.566;QD=2.94;ReadPosRankSum=-0.566;SNPEFF_AMINO_ACID_CHANGE=P389T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156046280_156047473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEX3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532414    GT:AD:DP:GQ:PL    0/1:13,8:21:91.79:92,0,362
1    156132909    rs143862668    GCA    G    489.52    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=4.635;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=98.3218;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.478;QD=15.3;ReadPosRankSum=-0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414683    GT:AD:DP:GQ:PL    0/1:18,14:32:99:529,0,783
1    156146218    rs12401573    C    T    261.05    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.301;DB;DP=26;Dels=0.0;FS=9.558;HRun=0;HaplotypeScore=0.9998;MQ=59.11;MQ0=0;MQRankSum=0.739;QD=10.04;ReadPosRankSum=0.082;SNPEFF_AMINO_ACID_CHANGE=P440;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156146196_156147534;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368284    GT:AD:DP:GQ:PL    0/1:15,11:26:99:291,0,470
1    156169610    rs2072499    A    G    579.05    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.845;DB;DP=42;Dels=0.0;FS=14.15;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.112;QD=13.79;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359511    GT:AD:DP:GQ:PL    0/1:23,19:42:99:609,0,679
1    156182710    rs2241107    T    C    109.37    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=57.87;MQ0=0;MQRankSum=0.365;QD=9.94;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359511    GT:AD:DP:GQ:PL    0/1:7,4:11:99:139,0,165
1    156202173    rs1052053    A    G    1509.96    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=99;Dels=0.0;FS=3.982;HRun=0;HaplotypeScore=0.8941;MQ=59.39;MQ0=0;MQRankSum=0.656;QD=15.25;ReadPosRankSum=1.386;SNPEFF_AMINO_ACID_CHANGE=Q75R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156202111_156202216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320139    GT:AD:DP:GQ:PL    0/1:46,53:99:99:1540,0,1325
1    156206121    rs1052067    G    A    828.27    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.1;DB;DP=68;Dels=0.0;FS=0.922;HRun=0;HaplotypeScore=1.4972;MQ=59.11;MQ0=0;MQRankSum=-0.043;QD=12.18;ReadPosRankSum=0.141;SNPEFF_AMINO_ACID_CHANGE=M137I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156206079_156206274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368277    GT:AD:DP:GQ:PL    0/1:36,32:68:99:858,0,1017
1    156247907    rs2248273    C    T    264.81    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=21;Dels=0.0;FS=9.84;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.462;QD=12.61;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361813    GT:AD:DP:GQ:PL    0/1:12,9:21:99:295,0,378
1    156255833    rs2842883    G    C    1162.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.13;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461597    GT:AD:DP:GQ:PL    1/1:1,34:35:93.29:1195,93,0
1    156264648    rs1570805    C    T    1469.75    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=5.114;DB;DP=86;Dels=0.0;FS=4.392;HRun=0;HaplotypeScore=1.6439;MQ=59.46;MQ0=0;MQRankSum=-1.723;QD=17.09;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=V94I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156264550_156264807;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000362007    GT:AD:DP:GQ:PL    0/1:40,46:86:99:1500,0,1014
1    156279210    rs3001784    T    C    401.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295688    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:435,33,0
1    156280296    rs149581010    GATAA    G    243.33    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=59.4736;IndelType=D;MQ=59.88;MQ0=0;MQRankSum=0.717;QD=22.12;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295688    GT:AD:DP:GQ:PL    0/1:5,6:11:99:282,0,336
1    156287360    rs2249790    C    T    866.48    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.131;DB;DP=59;Dels=0.0;FS=2.971;HRun=1;HaplotypeScore=3.6533;MQ=58.82;MQ0=0;MQRankSum=-0.28;QD=14.69;ReadPosRankSum=-0.389;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413555    GT:AD:DP:GQ:PL    0/1:30,29:59:99:896,0,969
1    156303527    rs2764402    C    T    135.17    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.825;QD=12.29;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489870    GT:AD:DP:GQ:PL    0/1:6,5:11:99:165,0,171
1    156347131    rs2245623    G    A    2329.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=G76D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156347092_156347278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RHBG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368246    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2362,178,0
1    156348344    rs2842851    C    T    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RHBG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255013    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    156351066    rs942679    C    A    422.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RHBG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255013    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:456,33,0
1    156354347    rs71591938    TC    T    651.50    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=6.445;DB;DP=82;FS=0.0;HRun=8;HaplotypeScore=313.4439;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=0.736;QD=7.95;ReadPosRankSum=0.015;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_156354318_156354392;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RHBG;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000255013    GT:AD:DP:GQ:PL    0/1:49,33:82:99:691,0,1433
1    156354367    rs6668857    A    G    732.49    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.075;DB;DP=77;Dels=0.0;FS=0.924;HRun=0;HaplotypeScore=0.7887;MQ=60.14;MQ0=0;MQRankSum=0.994;QD=9.51;ReadPosRankSum=0.31;SNPEFF_AMINO_ACID_CHANGE=H427R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156354351_156354392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RHBG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368246    GT:AD:DP:GQ:PL    0/1:47,29:77:99:762,0,1421
1    156376680    rs6662064    A    G    1299.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9648;MQ=58.84;MQ0=0;QD=32.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476966    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1333,108,0
1    156444754    .    C    G    462.50    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.934;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=1.4;QD=11.56;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493077    GT:AD:DP:GQ:PL    0/1:22,18:40:99:492,0,802
1    156446242    rs2274316    C    A    127.27    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.717;QD=11.57;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493077    GT:AD:DP:GQ:PL    0/1:6,5:11:99:157,0,207
1    156446903    rs2274317    T    C    294.18    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=56.92;MQ0=0;MQRankSum=1.899;QD=12.79;ReadPosRankSum=1.14;SNPEFF_AMINO_ACID_CHANGE=P206;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156446804_156446994;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353795    GT:AD:DP:GQ:PL    0/1:9,11:23:99:324,0,239
1    156450719    rs1185700    G    A    761.46    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.8;DB;DP=60;Dels=0.0;FS=5.483;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.718;QD=12.69;ReadPosRankSum=-1.09;SNPEFF_AMINO_ACID_CHANGE=P101;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156450626_156450763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348159    GT:AD:DP:GQ:PL    0/1:31,28:60:99:791,0,766
1    156450740    rs1925950    G    A    877.08    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.924;DB;DP=61;Dels=0.0;FS=5.399;HRun=0;HaplotypeScore=1.9156;MQ=59.24;MQ0=0;MQRankSum=-1.574;QD=14.38;ReadPosRankSum=-0.63;SNPEFF_AMINO_ACID_CHANGE=N94;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156450626_156450763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348159    GT:AD:DP:GQ:PL    0/1:25,35:61:99:907,0,605
1    156450873    rs2274319    T    C    261.77    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.353;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.372;QD=13.78;ReadPosRankSum=0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489057    GT:AD:DP:GQ:PL    0/1:8,11:19:99:292,0,281
1    156452093    rs1171558    G    A    44.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=11.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489057    GT:AD:DP:GQ:PL    0/1:2,2:4:28.77:75,0,29
1    156452783    rs1171559    A    T    146.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489057    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:179,15,0
1    156452870    rs2282286    G    A    489.14    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=3.522;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.582;QD=18.81;ReadPosRankSum=0.804;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489057    GT:AD:DP:GQ:PL    0/1:10,16:26:99:519,0,226
1    156496188    rs6427315    A    G    171.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
1    156503541    rs6699212    T    C    127    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476565    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:159,12,0
1    156509552    rs1171570    C    G    615.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:648,48,0
1    156518556    rs137902823    G    A    237.90    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.164;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.511;QD=11.89;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    0/1:11,9:20:99:268,0,330
1    156520173    rs1778819    T    A    330.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:364,27,0
1    156526234    rs2489139    C    T    253.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
1    156526387    rs11264498    C    G    1171.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.36;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=V410L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156526325_156526485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,36:36:93.27:1205,93,0
1    156526444    rs2488269    T    C    1194.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=29.87;SNPEFF_AMINO_ACID_CHANGE=R391G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156526325_156526485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,40:40:93.30:1228,93,0
1    156531474    rs1171544    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    156531871    rs1171545    A    G    497.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:531,39,0
1    156532207    rs1171546    T    C    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    156532344    rs7548309    T    G    885.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:919,69,0
1    156532733    rs4661183    T    C    446.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.84;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:479,39,0
1    156532908    rs16837492    C    A    3987.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.587;DB;DP=134;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9998;MQ=59.27;MQ0=0;MQRankSum=1.257;QD=29.76;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:2,132:134:99:3987,283,0
1    156532977    rs1171547    T    C    3550.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=Q249;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156532926_156533104;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3551,271,0
1    156534525    rs4661184    A    C    1306.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1340,99,0
1    156534539    rs4661185    G    A    1008.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,32:32:87.21:1042,87,0
1    156536123    rs2066378    T    C    669.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:703,54,0
1    156536133    rs4382715    A    G    674.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:708,54,0
1    156536221    rs2066377    G    C    956.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=P81;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156536182_156536338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,28:28:78.24:989,78,0
1    156536251    rs947662    T    C    821.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_AMINO_ACID_CHANGE=L71;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156536182_156536338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:854,63,0
1    156536353    rs947663    A    G    413.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:447,33,0
1    156539154    rs6427319    T    C    299.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=24.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361170    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:333,27,0
1    156552720    rs6688600    T    G    157.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368236    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
1    156556321    rs10796961    G    A    453.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=26.66;SNPEFF_AMINO_ACID_CHANGE=S576;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156556261_156556562;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368236    GT:AD:DP:GQ:PL    1/1:0,17:17:36.12:486,36,0
1    156561651    rs7516274    G    C    532.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.53;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=V19L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156561570_156561778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368233    GT:AD:DP:GQ:PL    1/1:0,15:16:45.14:566,45,0
1    156562008    rs1925949    G    A    1176.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=35.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368229    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1210,90,0
1    156562143    rs942959    G    A    757.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8675;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368229    GT:AD:DP:GQ:PL    1/1:2,22:24:60.19:791,60,0
1    156563025    rs942962    A    G    82.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467374    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    156563375    rs6427321    G    A    885    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9273;MQ=56.74;MQ0=0;MQRankSum=1.614;QD=30.52;ReadPosRankSum=1.375;SNPEFF_AMINO_ACID_CHANGE=G231E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156563200_156563668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368233    GT:AD:DP:GQ:PL    1/1:1,28:29:72.23:918,72,0
1    156563726    rs6427322    A    C    3855.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=I221L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156563674_156563923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368234    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3856,286,0
1    156563813    rs6668178    G    A    2953.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.2434;MQ=59.74;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=E250K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156563674_156563923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368234    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2987,223,0
1    156563852    rs942963    C    T    2237.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=T281;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156563674_156564091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368235    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2270,166,0
1    156563898    rs1270    T    C    1298.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368233    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1331,108,0
1    156563992    rs1271    C    G    256.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368233    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
1    156564640    rs3795732    G    A    602.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368233    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:636,48,0
1    156564922    rs3795733    C    T    2573.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=36.25;SNPEFF_AMINO_ACID_CHANGE=G399S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156564779_156565048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368229    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2606,193,0
1    156565049    rs72559129    A    AAC    6779.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;FS=0.0;HRun=0;HaplotypeScore=305.3154;IndelType=I;MQ=60.52;MQ0=0;QD=56.03;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_156565050_156565641;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000368229    GT:AD:DP:GQ:PL    1/1:2,115:121:99:6780,355,0
1    156567496    rs879461    C    T    281.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368233    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
1    156617968    rs2277873    G    A    680.48    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.948;DB;DP=42;Dels=0.0;FS=9.205;HRun=0;HaplotypeScore=0.9998;MQ=59.0;MQ0=0;MQRankSum=0.102;QD=16.2;ReadPosRankSum=-1.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441358    GT:AD:DP:GQ:PL    0/1:17,25:42:99:710,0,516
1    156618768    rs4661209    T    G    100.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=11.18;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424639    GT:AD:DP:GQ:PL    0/1:5,4:9:99:131,0,174
1    156622252    rs1056695    G    A    147.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=18.48;ReadPosRankSum=-0.322;SNPEFF_AMINO_ACID_CHANGE=E443K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156622040_156622684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255029    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,101
1    156626920    rs7524611    T    C    335.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=52.81;MQ0=0;QD=19.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361588    GT:AD:DP:GQ:PL    1/1:0,17:17:30.09:369,30,0
1    156628717    rs951964    C    A    127.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255029    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
1    156629037    rs11360    A    G    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496038    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    156641537    rs951781    C    T    1898.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-1.199;QD=36.51;ReadPosRankSum=0.267;SNPEFF_AMINO_ACID_CHANGE=V815I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156638555_156642997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NES;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368223    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1932,108,0
1    156646668    rs4278369    A    G    347.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_AMINO_ACID_CHANGE=V130A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156646274_156647189;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NES;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255024    GT:AD:DP:GQ:PL    1/1:0,13:13:27.09:381,27,0
1    156670545    rs4661213    C    T    495.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368220    GT:AD:DP:GQ:PL    1/1:0,16:16:42.10:528,42,0
1    156670983    rs7519545    T    C    282.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368220    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:315,27,0
1    156693135    rs1133856    C    T    950.38    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.407;DB;DP=62;Dels=0.0;FS=3.594;HRun=1;HaplotypeScore=3.2621;MQ=58.88;MQ0=0;MQRankSum=0.407;QD=15.33;ReadPosRankSum=-0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG20L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469074    GT:AD:DP:GQ:PL    0/1:29,33:62:99:980,0,907
1    156697056    rs3795737    T    C    1500.88    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.761;DB;DP=86;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.17;QD=17.45;ReadPosRankSum=0.457;SNPEFF_AMINO_ACID_CHANGE=N130S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156696698_156698227;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG20L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313146    GT:AD:DP:GQ:PL    0/1:38,48:86:99:1531,0,1264
1    156703456    rs10908518    G    C    153.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPL24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361531    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
1    156705593    rs4311877    G    C    1943.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5449;MQ=59.59;MQ0=0;QD=34.7;SNPEFF_AMINO_ACID_CHANGE=V400L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156705517_156705701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRNAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368216    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1976,147,0
1    156706559    rs8658    A    G    903.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPL24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361531    GT:AD:DP:GQ:PL    1/1:0,27:27:72.21:937,72,0
1    156707128    rs140737064    AAG    A    908.89    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=5.352;DB;DP=50;FS=1.174;HRun=0;HaplotypeScore=156.28;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=-0.734;QD=18.18;ReadPosRankSum=-0.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357325    GT:AD:DP:GQ:PL    0/1:26,24:50:99:948,0,1146
1    156707775    rs6670122    T    G    299.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357325    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:332,27,0
1    156713512    rs4437869    C    T    646.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=E184;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156713444_156713670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDGF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416666    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:680,54,0
1    156713558    rs4399146    G    A    281.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.527;DB;DP=24;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.651;QD=11.74;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=P169L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156713444_156713670;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDGF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416666    GT:AD:DP:GQ:PL    0/1:14,10:24:99:312,0,389
1    156721032    rs12030654    T    A    31.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.32;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357325    GT:AD:DP:GQ:PL    0/1:4,2:6:61.90:62,0,135
1    156752252    rs2274501    G    A    35.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=5.13;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271526    GT:AD:DP:GQ:PL    0/1:4,3:7:65.93:66,0,143
1    156761618    rs2644615    C    T    289.39    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.712;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.703;QD=8.27;ReadPosRankSum=0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473387    GT:AD:DP:GQ:PL    0/1:23,12:35:99:319,0,696
1    156767253    rs6701637    C    T    166.40    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.27;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.164;QD=10.4;ReadPosRankSum=-0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459707    GT:AD:DP:GQ:PL    0/1:9,7:16:99:196,0,296
1    156838141    rs1800879    T    C    148.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533630    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:181,15,0
1    156841259    rs2644614    A    C    803.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358660    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:836,63,0
1    156848794    rs2768756    C    T    378.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534682    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:412,33,0
1    156848808    rs2768757    T    C    344.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534682    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:377,30,0
1    156848832    rs144200331    C    T    198.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DB;DP=20;Dels=0.0;FS=5.614;HRun=0;HaplotypeScore=0.9665;MQ=58.84;MQ0=0;MQRankSum=-0.454;QD=9.91;ReadPosRankSum=0.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534682    GT:AD:DP:GQ:PL    0/1:12,8:20:99:228,0,345
1    156848995    rs6337    C    T    616.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=30.8;SNPEFF_AMINO_ACID_CHANGE=A593;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156848914_156849154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392302    GT:AD:DP:GQ:PL    1/1:0,20:20:51.15:649,51,0
1    156850104    rs2274499    G    C    85.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534682    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    156850112    rs2274500    T    G    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534682    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
1    156873727    rs12407843    G    A    971.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.786;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.98;MQ0=0;MQRankSum=-0.142;QD=17.67;ReadPosRankSum=0.426;SNPEFF_AMINO_ACID_CHANGE=P3;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156873710_156873819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:22,33:55:99:1002,0,496
1    156874421    rs41267433    C    G    208.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=17.34;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:4,8:12:99:238,0,118
1    156875037    rs6676171    T    G    73.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=10.53;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:3,4:7:98.84:104,0,99
1    156875092    rs4661074    G    A    91.78    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.717;QD=8.34;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:6,5:11:99:122,0,196
1    156875097    rs4661075    G    A    105.25    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.031;QD=9.57;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:6,5:11:99:135,0,190
1    156875107    rs2644590    C    A    110.68    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.811;QD=8.51;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:6,7:13:99:141,0,206
1    156875377    rs2644591    G    C    52.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:84,6,0
1    156875985    rs2644593    G    A    284.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
1    156876206    rs6688345    G    A    108.05    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.388;DB;DP=18;Dels=0.0;FS=2.452;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=6.0;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:12,6:18:99:138,0,410
1    156876221    rs6688349    G    A    176.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.784;DB;DP=20;Dels=0.0;FS=2.527;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.784;QD=8.84;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:12,8:20:99:207,0,374
1    156876237    rs6664765    C    T    205.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=14;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.406;QD=14.68;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:7,7:14:99:236,0,230
1    156876260    rs6664770    C    T    166.19    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=8.195;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=13.85;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:5,7:12:99:196,0,149
1    156876373    rs6677442    A    G    259.91    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=19;Dels=0.0;FS=2.702;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.087;QD=13.68;ReadPosRankSum=-0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:7,12:19:99:290,0,204
1    156876729    rs735953    T    C    113.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.25;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444016    GT:AD:DP:GQ:PL    0/1:3,4:7:99:144,0,102
1    156877249    rs6680819    A    G    578.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.06;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.142;QD=16.07;ReadPosRankSum=1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444016    GT:AD:DP:GQ:PL    0/1:18,18:36:99:609,0,593
1    156877457    rs1952294    T    C    4239.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.48;MQ0=0;QD=31.88;SNPEFF_AMINO_ACID_CHANGE=S234P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156877402_156877522;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    1/1:0,133:133:99:4240,322,0
1    156878531    rs11264580    T    C    40.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=10.05;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=H400;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156878447_156878621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:70,0,63
1    156878737    rs6671392    T    C    448.27    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.447;DB;DP=46;Dels=0.0;FS=2.524;HRun=2;HaplotypeScore=1.9243;MQ=59.5;MQ0=0;MQRankSum=-1.229;QD=9.74;ReadPosRankSum=-0.678;SNPEFF_AMINO_ACID_CHANGE=P440;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156878708_156878828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:26,19:46:99:478,0,764
1    156878887    rs11810027    G    A    383.12    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.774;QD=14.19;ReadPosRankSum=-0.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444016    GT:AD:DP:GQ:PL    0/1:13,14:27:99:413,0,356
1    156879504    rs41273205    A    G    315.69    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=17;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=1.9445;MQ=58.9;MQ0=0;MQRankSum=0.439;QD=18.57;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444016    GT:AD:DP:GQ:PL    0/1:7,10:17:99:346,0,238
1    156879580    rs3737224    C    T    539.90    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.455;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8727;MQ=59.32;MQ0=0;MQRankSum=-0.903;QD=15.88;ReadPosRankSum=-1.013;SNPEFF_AMINO_ACID_CHANGE=P483;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156879543_156879706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:13,20:34:99:570,0,345
1    156881959    rs41273215    C    T    252.37    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=13.28;ReadPosRankSum=0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482505    GT:AD:DP:GQ:PL    0/1:8,11:19:99:282,0,207
1    156882996    rs822441    G    C    712.58    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=4.983;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.2434;MQ=58.69;MQ0=0;MQRankSum=1.122;QD=10.04;ReadPosRankSum=-1.207;SNPEFF_AMINO_ACID_CHANGE=P811;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156882986_156883074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:43,27:71:99:743,0,1172
1    156883215    rs822442    C    A    572.38    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.958;DB;DP=42;Dels=0.0;FS=1.372;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.657;QD=13.63;ReadPosRankSum=0.438;SNPEFF_AMINO_ACID_CHANGE=N848K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156883183_156883315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:18,24:42:99:602,0,496
1    156883493    rs11264581    G    A    495.66    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=2.01;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.029;QD=19.83;ReadPosRankSum=1.311;SNPEFF_AMINO_ACID_CHANGE=R885H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156883484_156883552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:8,17:25:99:526,0,159
1    156883546    rs12137505    A    G    637.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.56;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.897;QD=15.95;ReadPosRankSum=-2.084;SNPEFF_AMINO_ACID_CHANGE=N903D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156883484_156883552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:16,24:40:99:668,0,504
1    156884365    rs749256    T    C    1043.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=37.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482505    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1077,81,0
1    156884584    rs56260937    C    T    473.98    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DB;DP=39;Dels=0.0;FS=1.817;HRun=0;HaplotypeScore=0.9999;MQ=59.41;MQ0=0;MQRankSum=-0.856;QD=12.15;ReadPosRankSum=-0.634;SNPEFF_AMINO_ACID_CHANGE=D1036;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156884439_156886226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PEAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292357    GT:AD:DP:GQ:PL    0/1:21,18:39:99:504,0,575
1    156894006    rs822438    C    G    112.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337428    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
1    156894825    rs72698699    C    T    71.33    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=7.93;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337428    GT:AD:DP:GQ:PL    0/1:5,4:9:99:101,0,180
1    156901888    rs822429    T    C    441.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.175;DB;DP=38;Dels=0.0;FS=2.181;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.565;QD=11.62;ReadPosRankSum=0.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315174    GT:AD:DP:GQ:PL    0/1:19,19:38:99:471,0,597
1    156902222    rs12119908    G    A    871.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.207;DB;DP=60;Dels=0.0;FS=1.086;HRun=0;HaplotypeScore=0.9734;MQ=58.45;MQ0=0;MQRankSum=0.462;QD=14.53;ReadPosRankSum=0.174;SNPEFF_AMINO_ACID_CHANGE=R483H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156902216_156902337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337428    GT:AD:DP:GQ:PL    0/1:30,30:60:99:902,0,804
1    156902259    rs822430    G    A    2542.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=34.35;SNPEFF_AMINO_ACID_CHANGE=T495;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156902216_156902337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC71;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337428    GT:AD:DP:GQ:PL    1/1:0,73:74:99:2575,196,0
1    156902281    rs822431    T    G    1160.63    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.032;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.19;MQ0=0;MQRankSum=1.156;QD=13.5;ReadPosRankSum=-1.622;SNPEFF_AMINO_ACID_CHANGE=S503A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156902216_156902337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337428    GT:AD:DP:GQ:PL    0/1:42,44:86:99:1191,0,1262
1    156902574    rs111602088    A    AT    520.31    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.043;DB;DP=55;FS=1.21;HRun=11;HaplotypeScore=174.4246;IndelType=I;MQ=58.93;MQ0=0;MQRankSum=0.11;QD=9.46;ReadPosRankSum=-0.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315174    GT:AD:DP:GQ:PL    0/1:31,23:55:99:559,0,380
1    156906450    rs883232    A    G    165.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=13.82;ReadPosRankSum=1.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492592    GT:AD:DP:GQ:PL    0/1:6,6:12:99:196,0,202
1    156906881    rs2275198    G    A    705.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.605;DB;DP=42;Dels=0.0;FS=12.349;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.029;QD=16.8;ReadPosRankSum=1.563;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337428    GT:AD:DP:GQ:PL    0/1:18,24:42:99:736,0,539
1    156906910    rs868187    C    T    655.89    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.332;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9594;MQ=59.41;MQ0=0;MQRankSum=-0.159;QD=16.82;ReadPosRankSum=1.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337428    GT:AD:DP:GQ:PL    0/1:15,24:39:99:686,0,413
1    156907031    rs4570419    C    T    782.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=54;Dels=0.0;FS=15.517;HRun=2;HaplotypeScore=1.5226;MQ=59.14;MQ0=0;MQRankSum=-0.069;QD=14.49;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337428    GT:AD:DP:GQ:PL    0/1:27,27:54:99:812,0,795
1    156907081    rs945508    T    C    1595.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.781;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=1.461;QD=30.1;ReadPosRankSum=0.645;SNPEFF_AMINO_ACID_CHANGE=H1427R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156907041_156907288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1629,100,0
1    156907115    rs63387061    T    C    480.79    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.496;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.48;MQ0=0;MQRankSum=0.037;QD=10.93;ReadPosRankSum=-0.962;SNPEFF_AMINO_ACID_CHANGE=S1416G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156907041_156907288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:23,21:44:99:511,0,788
1    156909303    rs3818807    T    A    725    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=2.9;DB;DP=40;Dels=0.0;FS=1.344;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.356;QD=18.12;ReadPosRankSum=0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315174    GT:AD:DP:GQ:PL    0/1:17,23:40:99:755,0,405
1    156909695    rs2275199    G    A    271.16    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.076;QD=12.91;ReadPosRankSum=-0.912;SNPEFF_AMINO_ACID_CHANGE=N1207;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_156909340_156909702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:10,11:21:99:301,0,302
1    156911379    rs2275200    A    G    149.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=16.64;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461678    GT:AD:DP:GQ:PL    0/1:3,6:9:65.89:180,0,66
1    156914070    rs16837807    C    A    346.98    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=29;Dels=0.0;FS=1.786;HRun=1;HaplotypeScore=0.8941;MQ=56.74;MQ0=0;MQRankSum=0.066;QD=11.96;ReadPosRankSum=0.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461678    GT:AD:DP:GQ:PL    0/1:16,13:29:99:377,0,535
1    156914240    rs138051987    CCATT    C    1056.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=252.1635;IndelType=D;MQ=56.2;MQ0=0;QD=22.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461678    GT:AD:DP:GQ:PL    1/1:22,20:47:75.22:1099,75,0
1    156915038    rs2275201    C    T    392.32    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=13.53;ReadPosRankSum=0.253;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461678    GT:AD:DP:GQ:PL    0/1:14,15:29:99:422,0,404
1    156915209    rs17410711    C    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    156916640    rs111988963    G    GCCTATCCCTT    6622.07    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.513;DB;DP=115;FS=1.627;HRun=0;HaplotypeScore=828.8114;IndelType=I;MQ=51.49;MQ0=0;MQRankSum=-6.068;QD=57.58;ReadPosRankSum=-1.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315174    GT:AD:DP:GQ:PL    0/1:69,32:115:99:6622,0,4546
1    156925435    rs2275204    T    C    891.16    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DB;DP=69;Dels=0.0;FS=2.003;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.463;QD=12.92;ReadPosRankSum=-1.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486670    GT:AD:DP:GQ:PL    0/1:39,30:69:99:921,0,1344
1    156927751    rs12132684    T    C    63.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.04;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:6,3:9:93.36:93,0,215
1    156928776    rs1572409    A    T    485.44    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.101;DB;DP=24;Dels=0.0;FS=1.706;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.298;QD=20.23;ReadPosRankSum=-0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:9,15:24:99:515,0,260
1    156930053    rs56372341    C    T    53.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=4.45;ReadPosRankSum=-1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:8,4:12:83.36:83,0,299
1    156939067    rs2275206    G    A    36.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:4,3:7:66.68:67,0,141
1    156939175    rs1336149    C    T    72.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:104,9,0
1    156941412    rs12136088    T    G    592.75    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.053;DB;DP=74;Dels=0.0;FS=3.316;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.218;QD=8.01;ReadPosRankSum=-1.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:44,29:74:99:623,0,1419
1    156946898    rs1006168    T    G    224.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.739;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.119;QD=11.25;ReadPosRankSum=1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:12,8:20:99:255,0,391
1    156947928    rs16837897    T    C    141.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.89;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:6,5:11:99:172,0,177
1    156947953    rs12141806    A    T    221.61    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=13.04;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:9,8:17:99:252,0,245
1    156948956    rs79248272    CCCT    C    388.34    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=76.6712;IndelType=D;MQ=56.18;MQ0=0;MQRankSum=0.939;QD=20.44;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:9,10:19:99:427,0,554
1    156954267    rs6427339    C    T    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    156956057    rs3737599    T    C    175.94    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=15.99;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361409    GT:AD:DP:GQ:PL    0/1:3,8:11:94:206,0,94
1    157030204    rs3795741    G    T    463.52    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.494;DB;DP=46;Dels=0.0;FS=1.158;HRun=2;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.819;QD=10.08;ReadPosRankSum=-0.776;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-110J1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379752    GT:AD:DP:GQ:PL    0/1:27,19:46:99:494,0,781
1    157069134    rs61730132    G    A    627.62    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.608;DB;DP=47;Dels=0.0;FS=6.381;HRun=1;HaplotypeScore=0.9734;MQ=49.02;MQ0=0;MQRankSum=0.267;QD=13.35;ReadPosRankSum=-1.972;SNPEFF_AMINO_ACID_CHANGE=S32L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157068933_157069170;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV3L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454449    GT:AD:DP:GQ:PL    0/1:25,22:47:99:658,0,763
1    157485275    rs3811036    T    G    54.88    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.87;MQ0=0;MQRankSum=0.103;QD=4.99;ReadPosRankSum=-1.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483875    GT:AD:DP:GQ:PL    0/1:5,6:11:84.87:85,0,176
1    157485429    rs60516051    C    G    1639.18    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.787;DB;DP=103;Dels=0.0;FS=1.724;HRun=1;HaplotypeScore=2.3919;MQ=60.0;MQ0=0;MQRankSum=1.078;QD=15.91;ReadPosRankSum=0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483875    GT:AD:DP:GQ:PL    0/1:45,58:103:99:1669,0,1237
1    157485504    rs115493285    G    A    1947.49    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=3.072;DB;DP=115;Dels=0.0;FS=0.739;HRun=0;HaplotypeScore=1.9243;MQ=59.8;MQ0=0;MQRankSum=-0.435;QD=16.93;ReadPosRankSum=1.069;SNPEFF_AMINO_ACID_CHANGE=S965;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157485041_157485554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356953    GT:AD:DP:GQ:PL    0/1:53,62:115:99:1977,0,1572
1    157485561    rs3811035    G    A    1062.45    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.32;DB;DP=65;Dels=0.0;FS=3.784;HRun=1;HaplotypeScore=1.9658;MQ=60.0;MQ0=0;MQRankSum=-1.267;QD=16.35;ReadPosRankSum=-0.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483875    GT:AD:DP:GQ:PL    0/1:31,34:65:99:1092,0,1042
1    157485720    rs1002967    T    C    479.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483875    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:513,42,0
1    157489516    rs1332714    T    G    341.16    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=29;Dels=0.0;FS=1.562;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.206;QD=11.76;ReadPosRankSum=-0.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368190    GT:AD:DP:GQ:PL    0/1:16,13:29:99:371,0,478
1    157490710    rs6696309    G    A    151.16    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=7.56;ReadPosRankSum=0.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368190    GT:AD:DP:GQ:PL    0/1:14,6:20:99:181,0,479
1    157491173    rs6427383    T    A    91.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=7.59;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368190    GT:AD:DP:GQ:PL    0/1:8,4:12:99:121,0,267
1    157497263    rs3761961    T    C    227.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368189    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:260,21,0
1    157508660    rs2012425    A    G    93.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481082    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    157508801    rs1972239    C    T    594.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481082    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:627,48,0
1    157508882    rs6427384    C    T    1124.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_AMINO_ACID_CHANGE=V381I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157508876_157509154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368191    GT:AD:DP:GQ:PL    1/1:0,37:37:84.28:1157,84,0
1    157509025    rs2012199    C    T    1172.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_AMINO_ACID_CHANGE=G333D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157508876_157509154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368191    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1205,90,0
1    157512453    rs3897288    A    G    281.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368188    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
1    157514091    rs12036228    C    T    2060.80    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=128;Dels=0.0;FS=2.411;HRun=0;HaplotypeScore=2.4258;MQ=60.0;MQ0=0;MQRankSum=0.514;QD=16.1;ReadPosRankSum=0.832;SNPEFF_AMINO_ACID_CHANGE=V184I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157514052_157514336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368191    GT:AD:DP:GQ:PL    0/1:63,65:128:99:2091,0,1959
1    157514097    rs6679793    A    G    4666.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4248;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_AMINO_ACID_CHANGE=Y182H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157514052_157514336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368191    GT:AD:DP:GQ:PL    1/1:0,126:127:99:4666,343,0
1    157517127    rs7531685    C    T    136.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.214;QD=5.69;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356953    GT:AD:DP:GQ:PL    0/1:16,8:24:99:167,0,555
1    157522016    rs7552348    G    A    531.69    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=3.919;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=18.33;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356953    GT:AD:DP:GQ:PL    0/1:12,17:29:99:562,0,363
1    157545231    rs849827    G    T    143.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.922;QD=20.53;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479869    GT:AD:DP:GQ:PL    0/1:2,5:7:63.70:174,0,64
1    157548669    rs1885561    T    A    75.57    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271532    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:106,0,29
1    157557957    rs11799853    T    C    409.04    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.121;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.218;QD=15.15;ReadPosRankSum=0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271532    GT:AD:DP:GQ:PL    0/1:13,14:27:99:439,0,420
1    157566019    rs10489674    G    A    93.30    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.033;DB;DP=24;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.367;QD=3.89;ReadPosRankSum=1.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271532    GT:AD:DP:GQ:PL    0/1:18,6:24:99:123,0,597
1    157566211    rs12744410    A    G    169.53    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=2.71;DB;DP=33;Dels=0.0;FS=2.517;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.071;QD=5.14;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271532    GT:AD:DP:GQ:PL    0/1:25,8:33:99:200,0,839
1    157567751    rs1361889    A    G    235.74    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=25;Dels=0.0;FS=3.682;HRun=2;HaplotypeScore=1.9964;MQ=60.0;MQ0=0;MQRankSum=1.287;QD=9.43;ReadPosRankSum=-1.396;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_157567704_157567870;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271532    GT:AD:DP:GQ:PL    0/1:14,11:25:99:266,0,368
1    157652929    rs141977401    TA    T    93.10    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.011;DB;DP=21;FS=4.559;HRun=9;HaplotypeScore=48.1637;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=4.43;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FCRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292392    GT:AD:DP:GQ:PL    0/1:14,7:21:99:132,0,390
1    157666027    rs115903952    G    T    1484.17    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.363;DB;DP=101;Dels=0.0;FS=2.615;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.901;QD=14.69;ReadPosRankSum=-0.003;SNPEFF_AMINO_ACID_CHANGE=A312D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157665830_157666117;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FCRL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292392    GT:AD:DP:GQ:PL    0/1:49,52:101:99:1514,0,1356
1    157666256    rs72708359    T    C    111.91    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FCRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478179    GT:AD:DP:GQ:PL    0/1:5,4:9:99:142,0,140
1    157668390    rs7522061    T    C    612.67    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.108;DB;DP=61;Dels=0.0;FS=1.194;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.559;QD=10.04;ReadPosRankSum=0.21;SNPEFF_AMINO_ACID_CHANGE=N28D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157668174_157668419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FCRL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292392    GT:AD:DP:GQ:PL    0/1:36,25:61:99:643,0,1105
1    157670290    rs945635    C    G    181.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.122;DB;DP=20;Dels=0.0;FS=2.199;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.733;QD=9.1;ReadPosRankSum=-1.813;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FCRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480682    GT:AD:DP:GQ:PL    0/1:12,8:20:99:212,0,304
1    157680114    rs17727339    T    C    241.98    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=25;Dels=0.0;FS=4.154;HRun=0;HaplotypeScore=0.8321;MQ=59.07;MQ0=0;MQRankSum=0.058;QD=9.68;ReadPosRankSum=0.579;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-367J7.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435919    GT:AD:DP:GQ:PL    0/1:13,12:25:99:272,0,436
1    157680273    rs72708379    T    C    281.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=1.626;QD=18.77;ReadPosRankSum=-0.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-367J7.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435919    GT:AD:DP:GQ:PL    0/1:4,10:14:99:311,0,113
1    157718283    rs6696643    A    T    850.11    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.013;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.84;MQ0=0;MQRankSum=0.767;QD=14.17;ReadPosRankSum=1.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292389    GT:AD:DP:GQ:PL    0/1:29,31:60:99:880,0,887
1    157737504    rs2873413    G    A    289.86    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.641;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=60.0;MQ0=0;MQRankSum=-1.122;QD=11.59;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462774    GT:AD:DP:GQ:PL    0/1:14,11:25:99:320,0,475
1    157740186    rs10540465    GTC    G    1065.48    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=5.755;DB;DP=48;FS=1.134;HRun=0;HaplotypeScore=271.9558;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=0.379;QD=22.2;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292389    GT:AD:DP:GQ:PL    0/1:20,27:48:99:1105,0,983
1    157744142    rs6700883    A    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292389    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:72,0,68
1    157768000    rs3811024    G    C    179.74    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DB;DP=22;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=8.17;ReadPosRankSum=-0.239;SNPEFF_AMINO_ACID_CHANGE=T316;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157767951_157768033;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358292    GT:AD:DP:GQ:PL    0/1:14,8:22:99:210,0,446
1    157771880    rs4971154    C    T    684.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DB;DP=40;Dels=0.0;FS=4.879;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.043;QD=17.11;ReadPosRankSum=-0.471;SNPEFF_AMINO_ACID_CHANGE=P237;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_157771705_157771983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358292    GT:AD:DP:GQ:PL    0/1:16,24:40:99:714,0,473
1    157774046    rs66550975    C    CA    179.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=44.8377;IndelType=I;MQ=50.65;MQ0=0;MQRankSum=-1.067;QD=22.45;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480310    GT:AD:DP:GQ:PL    0/1:2,6:8:53.45:219,0,53
1    157802748    rs2777815    C    G    73.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.38;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484609    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:104,0,30
1    157802877    rs2765500    T    C    423.06    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.046;QD=15.11;ReadPosRankSum=-0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484609    GT:AD:DP:GQ:PL    0/1:13,15:28:99:453,0,448
1    157802979    rs2261295    C    T    1377.51    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.456;DB;DP=99;Dels=0.0;FS=1.636;HRun=1;HaplotypeScore=3.0386;MQ=59.11;MQ0=0;MQRankSum=0.473;QD=13.91;ReadPosRankSum=-1.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484609    GT:AD:DP:GQ:PL    0/1:47,52:99:99:1408,0,1323
1    157806006    rs2765503    G    A    289.58    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.905;QD=18.1;ReadPosRankSum=1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368174    GT:AD:DP:GQ:PL    0/1:7,9:16:99:320,0,235
1    157811392    rs2260040    G    A    401.09    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.302;DB;DP=29;Dels=0.0;FS=1.762;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.592;QD=13.83;ReadPosRankSum=-0.855;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368174    GT:AD:DP:GQ:PL    0/1:13,16:29:99:431,0,384
1    158047601    rs11264901    A    G    58.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359209    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:88,0,30
1    158054379    rs927662    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359209    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    158056651    rs7364493    A    G    96.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=16.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359209    GT:AD:DP:GQ:PL    0/1:2,4:6:63.26:127,0,63
1    158057691    rs3820676    A    C    531.07    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.038;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.276;QD=19.67;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359209    GT:AD:DP:GQ:PL    0/1:10,17:27:99:561,0,301
1    158058109    rs6427419    C    A    1044.93    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.232;DB;DP=95;Dels=0.0;FS=0.814;HRun=0;HaplotypeScore=4.3493;MQ=56.56;MQ0=0;MQRankSum=0.819;QD=11.0;ReadPosRankSum=-1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359209    GT:AD:DP:GQ:PL    0/1:53,42:95:99:1075,0,1674
1    158066834    rs6427420    A    G    472.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.471;DB;DP=36;Dels=0.0;FS=7.791;HRun=0;HaplotypeScore=1.367;MQ=59.36;MQ0=0;MQRankSum=-0.142;QD=13.13;ReadPosRankSum=1.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359209    GT:AD:DP:GQ:PL    0/1:18,18:36:99:503,0,551
1    158067047    rs874844    A    C    102.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.11;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359209    GT:AD:DP:GQ:PL    0/1:2,4:6:60.97:133,0,61
1    158153996    rs426336    T    C    1674.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368171    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1708,129,0
1    158368392    rs61818748    C    T    247.45    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.401;DB;DP=22;Dels=0.0;FS=4.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=11.25;ReadPosRankSum=0.2;SNPEFF_AMINO_ACID_CHANGE=V289I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158368312_158369256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10T2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334438    GT:AD:DP:GQ:PL    0/1:13,9:22:99:277,0,410
1    158424637    rs1844787    A    C    5205.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9453;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-144L1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397776    GT:AD:DP:GQ:PL    1/1:0,164:164:99:5206,388,0
1    158450314    rs6679056    A    G    1079.13    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=4.543;DB;DP=103;Dels=0.0;FS=1.651;HRun=1;HaplotypeScore=3.5613;MQ=59.55;MQ0=0;MQRankSum=0.124;QD=10.48;ReadPosRankSum=-0.501;SNPEFF_AMINO_ACID_CHANGE=E216G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158449668_158450675;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10R2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368152    GT:AD:DP:GQ:PL    0/1:59,43:103:99:1109,0,1764
1    158450382    rs1418843    C    T    838.35    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.015;DB;DP=71;Dels=0.0;FS=6.814;HRun=1;HaplotypeScore=1.399;MQ=59.74;MQ0=0;MQRankSum=-0.199;QD=11.81;ReadPosRankSum=-1.45;SNPEFF_AMINO_ACID_CHANGE=L239F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158449668_158450675;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10R2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368152    GT:AD:DP:GQ:PL    0/1:39,32:71:99:868,0,1141
1    158507157    rs2051665    A    T    720.91    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=68;Dels=0.0;FS=2.089;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.451;QD=10.6;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:40,28:68:99:751,0,1189
1    158507160    rs2051666    T    G    650.42    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=0.785;DB;DP=67;Dels=0.0;FS=2.06;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=1.226;QD=9.71;ReadPosRankSum=-0.214;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:39,28:67:99:680,0,1189
1    158507184    rs2051068    A    G    699.51    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=2.973;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.66;MQ0=0;MQRankSum=0.595;QD=10.44;ReadPosRankSum=0.403;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:39,28:67:99:730,0,1162
1    158507222    rs80342507    GA    G    347.28    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=4.46;DB;DP=50;FS=2.893;HRun=8;HaplotypeScore=253.5501;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.197;QD=6.95;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:32,18:50:99:386,0,839
1    158517142    rs41273491    C    T    907.77    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=61;Dels=0.0;FS=2.204;HRun=0;HaplotypeScore=3.1259;MQ=59.47;MQ0=0;MQRankSum=1.353;QD=14.88;ReadPosRankSum=0.34;SNPEFF_AMINO_ACID_CHANGE=V252I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158516918_158517895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6Y1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302617    GT:AD:DP:GQ:PL    0/1:33,28:61:99:938,0,883
1    158517353    rs16840314    G    A    227.49    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8485;MQ=58.84;MQ0=0;MQRankSum=0.814;QD=8.12;ReadPosRankSum=-1.406;SNPEFF_AMINO_ACID_CHANGE=H181;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158516918_158517895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6Y1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302617    GT:AD:DP:GQ:PL    0/1:16,11:28:99:257,0,515
1    158532295    rs7534319    G    C    490.48    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.68;QD=14.86;ReadPosRankSum=1.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334632    GT:AD:DP:GQ:PL    0/1:17,16:33:99:520,0,584
1    158532405    rs7526514    T    G    1909.13    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=0.262;DB;DP=160;Dels=0.0;FS=5.66;HRun=0;HaplotypeScore=3.2043;MQ=59.71;MQ0=0;MQRankSum=1.02;QD=11.93;ReadPosRankSum=-0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334632    GT:AD:DP:GQ:PL    0/1:90,69:160:99:1939,0,2952
1    158533140    rs12080815    A    G    268.46    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.137;DB;DP=25;Dels=0.0;FS=9.129;HRun=1;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=0.465;QD=10.74;ReadPosRankSum=0.52;SNPEFF_AMINO_ACID_CHANGE=F85;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158532441_158533394;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6P1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334632    GT:AD:DP:GQ:PL    0/1:14,11:25:99:298,0,483
1    158533224    rs12081915    A    G    263.81    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.127;DB;DP=20;Dels=0.0;FS=4.786;HRun=3;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=13.19;ReadPosRankSum=2.747;SNPEFF_AMINO_ACID_CHANGE=R57;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158532441_158533394;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6P1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334632    GT:AD:DP:GQ:PL    0/1:7,13:20:99:294,0,217
1    158549264    rs863360    G    A    375.16    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.09;DB;DP=39;Dels=0.0;FS=1.293;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-0.06;QD=9.62;ReadPosRankSum=-0.747;SNPEFF_AMINO_ACID_CHANGE=I142;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158548709_158549689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10X1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368150    GT:AD:DP:GQ:PL    0/1:24,15:39:99:405,0,763
1    158549420    rs863361    C    T    644.31    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.67;MQ0=0;MQRankSum=-1.479;QD=11.3;ReadPosRankSum=-2.028;SNPEFF_AMINO_ACID_CHANGE=T90;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158548709_158549689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10X1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368150    GT:AD:DP:GQ:PL    0/1:33,24:57:99:674,0,1022
1    158549492    rs863362    C    T    1074.38    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.31;DB;DP=79;Dels=0.0;FS=2.0;HRun=0;HaplotypeScore=1.6988;MQ=59.18;MQ0=0;MQRankSum=-1.777;QD=13.6;ReadPosRankSum=1.107;SNPEFF_AMINO_ACID_CHANGE=W66*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_158548709_158549689;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10X1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000368150    GT:AD:DP:GQ:PL    0/1:43,36:79:99:1104,0,1290
1    158549511    rs863363    A    G    1147.21    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=86;Dels=0.0;FS=4.526;HRun=1;HaplotypeScore=1.5226;MQ=59.46;MQ0=0;MQRankSum=0.789;QD=13.34;ReadPosRankSum=0.754;SNPEFF_AMINO_ACID_CHANGE=I60T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158548709_158549689;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10X1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368150    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1177,0,1457
1    158576100    rs860772    G    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
1    158577109    rs857685    A    C    2471.89    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=0.115;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9941;MQ=59.87;MQ0=0;MQRankSum=-0.231;QD=14.13;ReadPosRankSum=0.139;SNPEFF_AMINO_ACID_CHANGE=N294T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158576229_158577170;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10Z1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361284    GT:AD:DP:GQ:PL    0/1:88,87:175:99:2502,0,2673
1    158580921    rs66981873    GCA    G    153.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=59.5675;IndelType=D;MQ=53.87;MQ0=0;QD=15.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10Z1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361284    GT:AD:DP:GQ:PL    1/1:2,5:10:20.72:196,21,0
1    158582426    rs2518489    G    A    39.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481212    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:70,0,29
1    158582543    rs2251963    G    A    477.73    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.462;DB;DP=31;Dels=0.0;FS=4.439;HRun=0;HaplotypeScore=1.983;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=15.41;ReadPosRankSum=0.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492934    GT:AD:DP:GQ:PL    0/1:13,18:31:99:508,0,406
1    158582552    rs2251964    G    A    615.43    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.124;DB;DP=33;Dels=0.0;FS=7.389;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.608;QD=18.65;ReadPosRankSum=-0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492934    GT:AD:DP:GQ:PL    0/1:13,20:33:99:645,0,381
1    158582646    rs2251969    T    C    743.90    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=56;Dels=0.0;FS=1.022;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.808;QD=13.28;ReadPosRankSum=-0.379;SNPEFF_AMINO_ACID_CHANGE=A2362;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158582607_158582751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:25,31:56:99:774,0,675
1    158584091    rs952094    A    G    704.50    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.584;DB;DP=55;Dels=0.0;FS=6.465;HRun=1;HaplotypeScore=4.3864;MQ=57.0;MQ0=0;MQRankSum=0.644;QD=12.81;ReadPosRankSum=0.089;SNPEFF_AMINO_ACID_CHANGE=I2262T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158584043_158584096;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:22,32:55:99:734,0,620
1    158584103    rs5778083    G    GAA    629.66    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=4.216;DB;DP=49;FS=1.471;HRun=12;HaplotypeScore=292.2413;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=-0.46;QD=12.85;ReadPosRankSum=-0.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484520    GT:AD:DP:GQ:PL    0/1:32,12:49:99:669,0,341
1    158585230    rs2518491    C    T    979.39    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DB;DP=54;Dels=0.0;FS=5.89;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.045;QD=18.14;ReadPosRankSum=-0.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484520    GT:AD:DP:GQ:PL    0/1:22,32:54:99:1009,0,755
1    158587390    rs857716    C    T    436.18    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=32;Dels=0.0;FS=1.428;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.208;QD=13.63;ReadPosRankSum=-0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484520    GT:AD:DP:GQ:PL    0/1:15,17:32:99:466,0,441
1    158587784    rs857717    T    G    1518.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461624    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1552,114,0
1    158597309    rs12044097    A    G    120.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=9.26;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:6,7:13:99:150,0,215
1    158607788    rs2518492    T    G    2770.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5767;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465741    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2803,211,0
1    158607935    rs857725    T    G    630.67    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=1.72;DB;DP=57;Dels=0.0;FS=1.287;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.075;QD=11.06;ReadPosRankSum=0.428;SNPEFF_AMINO_ACID_CHANGE=K1693Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158607823_158608031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:35,22:57:99:661,0,1144
1    158612236    rs863931    A    G    1121.76    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.369;DB;DP=91;Dels=0.0;FS=0.803;HRun=0;HaplotypeScore=1.9326;MQ=58.71;MQ0=0;MQRankSum=0.118;QD=12.33;ReadPosRankSum=-1.246;SNPEFF_AMINO_ACID_CHANGE=C1568R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158612201_158612332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:50,41:91:99:1152,0,1647
1    158612548    rs857721    T    A    610.42    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DB;DP=39;Dels=0.0;FS=3.899;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.155;QD=15.65;ReadPosRankSum=0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:20,19:39:99:640,0,693
1    158618223    rs857677    C    T    456.37    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.378;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=14.26;ReadPosRankSum=1.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:17,15:32:99:486,0,565
1    158619728    rs2482965    A    C    581.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=S1163A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158619646_158619737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:614,45,0
1    158624528    rs35948326    G    T    509.12    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.59;MQ0=0;MQRankSum=-1.627;QD=11.31;ReadPosRankSum=-0.831;SNPEFF_AMINO_ACID_CHANGE=A970D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158624401_158624538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:28,17:45:99:539,0,886
1    158639029    rs111877794    A    G    97.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=8.14;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    0/1:8,4:12:99:128,0,301
1    158639601    rs2298801    A    G    2070.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;QD=36.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2103,156,0
1    158644105    rs703116    T    A    4510.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.65;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467387    GT:AD:DP:GQ:PL    1/1:1,131:132:99:4511,334,0
1    158646223    rs12135144    T    C    342.12    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.854;QD=20.12;ReadPosRankSum=-0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467387    GT:AD:DP:GQ:PL    0/1:6,11:17:99:372,0,181
1    158646300    rs90078    C    T    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467387    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
1    158647495    rs325996    A    T    843.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=A314;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158647480_158647624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,23:24:63.21:877,63,0
1    158647631    rs325995    T    A    1390.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1423,105,0
1    158648008    rs325994    C    A    173.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
1    158648490    rs325993    T    C    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
1    158654786    rs385096    C    T    462.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:496,36,0
1    158655036    rs435080    G    A    1991.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=58.22;MQ0=0;QD=31.62;SNPEFF_AMINO_ACID_CHANGE=V42;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158654898_158655137;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2025,153,0
1    158655162    rs2564859    C    A    1595.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1628,120,0
1    158655315    rs366221    T    A    77.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
1    158656281    rs2564858    T    C    1524.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.57;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368147    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1557,117,0
1    158656347    rs111674514    C    CAGAG    1533.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.432;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=201.0455;IndelType=I;MQ=56.21;MQ0=0;MQRankSum=-0.226;QD=43.82;ReadPosRankSum=0.829;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467387    GT:AD:DP:GQ:PL    1/1:12,21:35:41.29:1576,41,0
1    158735595    rs857824    C    T    3350.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_AMINO_ACID_CHANGE=R293H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158735466_158736492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335094    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3350,250,0
1    158735691    rs857825    T    C    3630.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=Q261R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158735466_158736492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335094    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3630,280,0
1    158735740    rs857826    A    G    3295.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=F245L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158735466_158736492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335094    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3295,250,0
1    158735892    rs857827    A    G    3415.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_AMINO_ACID_CHANGE=I194T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158735466_158736492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335094    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3416,247,0
1    158736215    rs6666753    G    A    1926.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=L86;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158735466_158736492;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6N1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335094    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1959,144,0
1    158736445    rs1864346    C    T    1110.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_AMINO_ACID_CHANGE=A10T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158735466_158736492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335094    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1143,84,0
1    158736517    rs1864347    A    T    267.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=26.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6N1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335094    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:300,24,0
1    158747506    rs11805711    C    G    155.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=22.21;ReadPosRankSum=0.922;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6N2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339258    GT:AD:DP:GQ:PL    0/1:2,5:7:51.56:185,0,52
1    158778206    rs66499917    C    T    512.38    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.147;DB;DP=33;Dels=0.0;FS=5.403;HRun=0;HaplotypeScore=8.96;MQ=58.59;MQ0=0;MQRankSum=-1.366;QD=15.53;ReadPosRankSum=-0.091;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10AA1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325632    GT:AD:DP:GQ:PL    0/1:14,19:33:99:542,0,465
1    158778764    rs7550055    T    G    539.59    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.583;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.866;QD=9.81;ReadPosRankSum=-0.166;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10AA1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325632    GT:AD:DP:GQ:PL    0/1:35,20:55:99:570,0,1086
1    158818905    .    T    G    31.80    QDFilter2    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=56.5;MQ0=0;MQRankSum=-0.231;QD=1.67;ReadPosRankSum=2.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368141    GT:AD:DP:GQ:PL    0/1:6,13:19:61.79:62,0,119
1    158909164    rs2325704    C    A    1592.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYHIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458222    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1625,126,0
1    158913525    rs856082    A    G    422.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYHIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368135    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:455,33,0
1    158913532    rs4656498    C    T    454.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYHIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368135    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:488,36,0
1    158915069    rs856083    C    G    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYHIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368138    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
1    158943740    rs12071289    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYHIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368138    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:72,0,67
1    158986225    rs856042    T    C    297.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426592    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
1    158986477    rs866484    G    C    1847.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0234;MQ=60.0;MQ0=0;MQRankSum=-0.595;QD=28.87;ReadPosRankSum=1.083;SNPEFF_AMINO_ACID_CHANGE=S179T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_158986323_158986490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295809    GT:AD:DP:GQ:PL    1/1:1,63:64:99:1881,138,0
1    158987941    rs856046    A    G    490.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=37.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426592    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:523,39,0
1    158990412    rs856049    A    G    446.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426592    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:479,36,0
1    159002155    rs856058    T    A    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295809    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    159002222    rs861318    A    G    401.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295809    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:435,33,0
1    159002301    rs2518553    T    C    1101.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.94;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295809    GT:AD:DP:GQ:PL    1/1:0,34:34:87.24:1135,87,0
1    159002377    rs1057027    C    A    2329.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.5;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=R357S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159002314_159002481;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430894    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2362,181,0
1    159002389    rs1057028    T    A    2633.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=54.88;MQ0=0;QD=35.11;SNPEFF_AMINO_ACID_CHANGE=Y361N;SNPEFF_CODON_CHANGE=Tat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159002314_159002481;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430894    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2667,208,0
1    159002557    rs1633256    A    G    1061.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.0;MQ0=0;QD=23.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295809    GT:AD:DP:GQ:PL    1/1:0,46:46:90.27:1094,90,0
1    159002577    rs66518077    TGGATTG    T    1953.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=349.531;IndelType=D;MQ=29.0;MQ0=0;QD=57.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295809    GT:AD:DP:GQ:PL    1/1:7,27:34:81.28:1996,81,0
1    159032255    rs2793845    G    T    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368129    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    159163119    rs862990    C    T    739.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368124    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:773,57,0
1    159169641    rs862999    T    C    1324    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=29.42;SNPEFF_AMINO_ACID_CHANGE=L351;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159169541_159169666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368125    GT:AD:DP:GQ:PL    1/1:1,44:45:99:1357,108,0
1    159174605    rs72547266    G    A    96.38    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=8.76;ReadPosRankSum=-0.361;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_159173803_159174770;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DARC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359381    GT:AD:DP:GQ:PL    0/1:5,6:11:99:126,0,123
1    159174824    rs863001    G    C    1129.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368124    GT:AD:DP:GQ:PL    1/1:0,39:39:90.25:1163,90,0
1    159174920    rs863002    C    T    110.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.42;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368124    GT:AD:DP:GQ:PL    0/1:2,4:6:57.20:141,0,57
1    159175354    rs12075    G    A    660.71    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.541;DB;DP=43;Dels=0.0;FS=2.817;HRun=0;HaplotypeScore=2.5655;MQ=59.46;MQ0=0;MQRankSum=0.038;QD=15.37;ReadPosRankSum=-0.869;SNPEFF_AMINO_ACID_CHANGE=G42D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159175251_159176288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DARC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359381    GT:AD:DP:GQ:PL    0/1:20,23:43:99:691,0,585
1    159402584    rs11452668    G    GT    1588.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=2;HaplotypeScore=92.4255;IndelType=I;MQ=60.22;MQ0=0;QD=36.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180D21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504970    GT:AD:DP:GQ:PL    1/1:4,38:43:99:1631,114,0
1    159402695    rs4491058    A    C    363.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180D21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504970    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:396,30,0
1    159409479    rs12145616    T    G    283.01    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.093;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.954;QD=11.79;ReadPosRankSum=0.031;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423932    GT:AD:DP:GQ:PL    0/1:13,11:24:99:313,0,436
1    159409533    rs10908721    G    A    1778.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_159409512_159410600;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423932    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1812,132,0
1    159409734    rs10908722    G    T    2187.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.62;MQ0=0;QD=35.86;SNPEFF_AMINO_ACID_CHANGE=M62I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159409512_159410600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423932    GT:AD:DP:GQ:PL    1/1:0,60:61:99:2220,169,0
1    159409857    rs12048482    A    G    658.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.56;DB;DP=44;Dels=0.0;FS=2.837;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=14.96;ReadPosRankSum=0.402;SNPEFF_AMINO_ACID_CHANGE=I103M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159409512_159410600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423932    GT:AD:DP:GQ:PL    0/1:22,22:44:99:688,0,660
1    159409884    rs12118628    G    A    896.24    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.763;DB;DP=64;Dels=0.0;FS=1.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.056;QD=14.0;ReadPosRankSum=-1.312;SNPEFF_AMINO_ACID_CHANGE=M112I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159409512_159410600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423932    GT:AD:DP:GQ:PL    0/1:31,33:64:99:926,0,870
1    159505297    rs4656837    C    T    1905.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.57;MQ0=0;QD=35.29;SNPEFF_AMINO_ACID_CHANGE=P167;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159504793_159505842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10J5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334857    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1939,141,0
1    159558258    rs2808661    A    G    662.41    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=39;Dels=0.0;FS=1.309;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.823;QD=16.98;ReadPosRankSum=-2.324;SNPEFF_AMINO_ACID_CHANGE=V144;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159557891_159558655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255040    GT:AD:DP:GQ:PL    0/1:15,24:39:99:692,0,488
1    159778699    rs12042065    G    A    891.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FCRL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541729    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:924,69,0
1    159785284    rs4411129    C    G    1564.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FCRL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321935    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1598,120,0
1    159799599    rs78633745    C    CA    599.72    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=26;FS=0.0;HRun=3;HaplotypeScore=64.3242;IndelType=I;MQ=60.42;MQ0=0;MQRankSum=-0.32;QD=23.07;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368102    GT:AD:DP:GQ:PL    0/1:8,18:26:99:639,0,213
1    159807969    rs2494491    A    T    70.07    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;MQRankSum=0.336;QD=6.37;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289707    GT:AD:DP:GQ:PL    0/1:6,5:11:99:100,0,178
1    159824967    rs2501340    G    C    45.22    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=3.48;ReadPosRankSum=0.085;SNPEFF_AMINO_ACID_CHANGE=Q21E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159824966_159825137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf204;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368102    GT:AD:DP:GQ:PL    0/1:10,3:13:75.22:75,0,292
1    159825916    rs11587021    C    T    170.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=14.2;ReadPosRankSum=1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368100    GT:AD:DP:GQ:PL    0/1:6,6:12:99:200,0,175
1    159826048    rs2494500    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368100    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
1    159828128    rs2494504    A    G    485.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368100    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:518,42,0
1    159828746    rs2501337    G    A    333.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368100    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:367,30,0
1    159832425    rs2494507    G    A    519.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_159832263_159832447;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368100    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:552,42,0
1    159842088    rs2494518    T    A    451.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=34.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368099    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:485,36,0
1    159842103    rs11265289    C    T    525.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=1.123;QD=30.89;ReadPosRankSum=-1.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368099    GT:AD:DP:GQ:PL    1/1:1,16:17:12.03:558,12,0
1    159842566    rs4545332    T    A    87.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475911    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    159842691    rs4460634    C    G    740.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9867;MQ=58.84;MQ0=0;QD=37.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475911    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:774,60,0
1    159843131    rs7527219    A    G    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475911    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
1    159854392    rs2501325    C    A    2745.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.71;MQ0=0;QD=34.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479940    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2779,211,0
1    159857427    rs72700671    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368099    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    159860259    rs2501320    G    A    1925.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=58.88;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368099    GT:AD:DP:GQ:PL    1/1:0,57:58:99:1958,144,0
1    159889686    rs2252815    G    A    1073.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.63;MQ0=0;QD=31.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAGLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320307    GT:AD:DP:GQ:PL    1/1:0,34:34:90.25:1107,90,0
1    159897681    rs112301302    TA    T    186.26    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=29;FS=2.35;HRun=15;HaplotypeScore=181.6227;IndelType=D;MQ=54.79;MQ0=0;MQRankSum=-0.28;QD=6.42;ReadPosRankSum=1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198587    GT:AD:DP:GQ:PL    0/1:8,19:29:24.71:225,0,25
1    159922369    rs2840583    C    T    2031.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368092    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2065,153,0
1    159922959    rs2249707    C    T    93.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368092    GT:AD:DP:GQ:PL    1/1:0,5:5:11.99:126,12,0
1    159923111    rs2789417    T    G    1127.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.71;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=I127L;SNPEFF_CODON_CHANGE=Ata/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159923099_159923443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368092    GT:AD:DP:GQ:PL    1/1:0,36:36:87.25:1160,87,0
1    160000435    rs12409352    A    T    966.73    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.701;DB;DP=65;Dels=0.0;FS=0.964;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.998;QD=14.87;ReadPosRankSum=1.16;SNPEFF_AMINO_ACID_CHANGE=F365L;SNPEFF_CODON_CHANGE=ttT/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_159997462_160001783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368090    GT:AD:DP:GQ:PL    0/1:29,36:65:99:997,0,879
1    160012406    rs12729701    A    G    70.71    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.1;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368089    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,144
1    160057670    rs73023672    T    C    74.43    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=9.3;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314485    GT:AD:DP:GQ:PL    0/1:3,5:8:71.48:104,0,71
1    160085868    rs2854244    A    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361216    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    160090674    rs2854246    T    C    217.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.6986;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361216    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
1    160093222    rs2820581    C    T    1866.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478587    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1899,144,0
1    160093648    rs41265763    G    A    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.64;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478587    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,137
1    160093911    rs2820582    T    C    656.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478587    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:689,54,0
1    160093927    rs2854248    T    A    247.68    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.096;QD=16.51;ReadPosRankSum=-0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478587    GT:AD:DP:GQ:PL    0/1:7,8:15:99:278,0,240
1    160093942    rs17846707    G    A    137.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=12.5;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478587    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,220
1    160095127    rs7548116    T    A    265.12    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=26.51;ReadPosRankSum=-0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478587    GT:AD:DP:GQ:PL    0/1:2,8:10:51.14:295,0,51
1    160097315    rs2295623    C    A    237.91    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=15;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.555;QD=15.86;ReadPosRankSum=1.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468587    GT:AD:DP:GQ:PL    0/1:7,8:15:99:268,0,243
1    160097666    rs6695366    G    A    926.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468587    GT:AD:DP:GQ:PL    1/1:0,27:27:72.21:959,72,0
1    160098543    rs1063125    G    A    766.63    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=1.566;DB;DP=53;Dels=0.0;FS=3.978;HRun=0;HaplotypeScore=0.0;MQ=53.15;MQ0=1;MQRankSum=-1.879;QD=14.46;ReadPosRankSum=-0.553;SNPEFF_AMINO_ACID_CHANGE=S218;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160098442_160098728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538123    GT:AD:DP:GQ:PL    0/1:23,30:53:99:797,0,670
1    160098668    .    T    G    317.33    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.782;DP=21;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.9789;MQ=57.99;MQ0=0;MQRankSum=-0.246;QD=15.11;ReadPosRankSum=0.387;SNPEFF_AMINO_ACID_CHANGE=I260R;SNPEFF_CODON_CHANGE=aTa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160098442_160098728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538123    GT:AD:DP:GQ:PL    0/1:11,10:21:99:347,0,329
1    160098927    rs5778151    A    AG    2106.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=1;HaplotypeScore=136.451;IndelType=I;MQ=61.02;MQ0=0;QD=42.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468587    GT:AD:DP:GQ:PL    1/1:0,50:50:99:2148,147,0
1    160100201    rs17846713    C    G    723.87    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.078;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.01;MQ0=0;MQRankSum=0.92;QD=15.4;ReadPosRankSum=1.451;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468587    GT:AD:DP:GQ:PL    0/1:21,26:47:99:754,0,592
1    160124875    rs6427504    G    A    6049.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=193;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.1816;MQ=59.4;MQ0=0;QD=31.34;SNPEFF_AMINO_ACID_CHANGE=G83D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160124835_160125038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,193:193:99:6049,448,0
1    160128671    rs4656888    G    A    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,72
1    160128994    rs10908764    C    T    572.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:606,45,0
1    160129495    rs7551983    G    A    156.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:189,15,0
1    160134205    rs11265338    C    T    3051.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.45;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=A346;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160133946_160134214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3085,235,0
1    160136208    rs10797062    G    A    320.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:354,27,0
1    160136225    rs41288135    A    G    139.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.729;QD=13.99;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:4,6:10:99:170,0,132
1    160136350    rs7529215    G    A    1191.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.31;MQ0=1;QD=31.36;SNPEFF_AMINO_ACID_CHANGE=A360;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160136318_160136516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,38:38:93.28:1225,93,0
1    160137300    rs4656889    A    C    274.41    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=22;Dels=0.0;FS=7.104;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=12.47;ReadPosRankSum=-0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:12,10:22:99:304,0,436
1    160137422    rs12063789    G    A    77.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:107,0,31
1    160140825    rs1186695    G    A    68.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
1    160140886    rs1202164    T    C    209.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
1    160140998    rs1209804    G    A    972.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.614;QD=12.0;ReadPosRankSum=2.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:45,36:81:99:1002,0,1333
1    160141196    rs625549    C    T    1544.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=36.78;SNPEFF_AMINO_ACID_CHANGE=Y549;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160141041_160141230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1578,117,0
1    160141285    rs669162    C    T    270.40    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=86;Dels=0.0;FS=2.275;HRun=0;HaplotypeScore=3.2263;MQ=59.46;MQ0=0;MQRankSum=0.74;QD=3.14;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:36,50:86:99:300,0,1301
1    160141286    rs625129    C    G    300.82    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.788;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2263;MQ=59.48;MQ0=0;MQRankSum=-0.395;QD=3.42;ReadPosRankSum=-0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:36,52:88:99:331,0,1306
1    160144614    rs140327507    G    A    106.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=0.922;QD=13.3;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,129
1    160145586    rs2180750    G    T    125.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
1    160145688    rs1884996    C    G    456.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:490,36,0
1    160146173    rs881291    T    C    367.97    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.339;DB;DP=30;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=0.293;QD=12.27;ReadPosRankSum=-0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:17,13:30:99:398,0,583
1    160147148    rs1408664    A    G    106.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.36;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,136
1    160147502    rs731852    T    G    1810.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6899;MQ=59.59;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1843,138,0
1    160147510    rs731853    G    A    643    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.784;DB;DP=48;Dels=0.0;FS=2.157;HRun=1;HaplotypeScore=1.7005;MQ=59.52;MQ0=0;MQRankSum=0.918;QD=13.4;ReadPosRankSum=-0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:24,24:48:99:673,0,756
1    160151421    rs11265350    G    C    107.30    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;MQRankSum=-0.696;QD=7.66;ReadPosRankSum=-2.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    0/1:8,6:14:99:137,0,249
1    160151450    rs7519748    T    C    578.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:612,48,0
1    160151624    rs71579661    G    GC    3174.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.118;DB;DP=87;FS=0.0;HRun=3;HaplotypeScore=211.1769;IndelType=I;MQ=56.03;MQ0=0;MQRankSum=0.68;QD=36.49;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:10,77:87:99:3216,202,0
1    160152057    rs1935306    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368081    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    160156027    rs12131640    C    G    1607.10    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=114;Dels=0.0;FS=6.593;HRun=0;HaplotypeScore=0.6651;MQ=56.89;MQ0=0;MQRankSum=0.664;QD=14.1;ReadPosRankSum=1.409;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418334    GT:AD:DP:GQ:PL    0/1:55,59:114:99:1637,0,1731
1    160163446    rs3747621    C    T    131.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.95;MQ0=0;MQRankSum=-1.485;QD=9.42;ReadPosRankSum=0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368078    GT:AD:DP:GQ:PL    0/1:8,6:14:99:162,0,281
1    160163449    rs3747622    G    C    122.16    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=-2.257;QD=7.64;ReadPosRankSum=0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368078    GT:AD:DP:GQ:PL    0/1:9,7:16:99:152,0,287
1    160164668    rs1186693    T    C    123.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368078    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
1    160165095    rs2275703    A    C    62.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.44;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368078    GT:AD:DP:GQ:PL    0/1:3,3:6:92.64:93,0,93
1    160165449    .    C    CA    118.17    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DP=12;FS=8.195;HRun=0;HaplotypeScore=52.0848;IndelType=I;MQ=62.65;MQ0=0;MQRankSum=1.134;QD=9.85;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368078    GT:AD:DP:GQ:PL    0/1:7,5:12:99:157,0,239
1    160165451    rs10908769    C    T    134.03    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=8.751;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;MQRankSum=-1.866;QD=13.4;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368078    GT:AD:DP:GQ:PL    0/1:4,6:10:78.25:164,0,78
1    160165572    rs60043899    T    A    187.72    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=9.39;ReadPosRankSum=-2.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368078    GT:AD:DP:GQ:PL    0/1:13,7:20:99:218,0,434
1    160169473    rs959166    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481081    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
1    160178356    rs667306    A    G    971.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360472    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1004,75,0
1    160214027    rs2275700    T    C    95.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326837    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
1    160236470    rs11265366    T    A    2457.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.06;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555195    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2490,204,0
1    160251792    rs2795067    A    G    725.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524939    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:759,57,0
1    160260233    rs2298104    T    C    1047.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.45;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545284    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1080,84,0
1    160262678    rs2369474    T    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545284    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    160263124    rs1317944    C    T    920.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545284    GT:AD:DP:GQ:PL    1/1:1,26:28:72.23:954,72,0
1    160265515    rs3789042    T    C    1096.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241704    GT:AD:DP:GQ:PL    1/1:0,32:32:84.24:1129,84,0
1    160275434    rs2066320    A    G    1721.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.1845;MQ=59.6;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481040    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1755,138,0
1    160276709    rs7522166    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481040    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
1    160302444    rs4656897    G    A    208.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541366    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
1    160303416    rs1802778    G    A    814.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=N121;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160303393_160303469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241704    GT:AD:DP:GQ:PL    1/1:0,27:27:60.20:848,60,0
1    160309509    rs1886420    T    A    83.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241704    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    160309664    rs1886419    T    G    1798.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241704    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1832,138,0
1    160313733    rs1886417    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294785    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    160318940    rs6669689    A    G    814.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465223    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:848,66,0
1    160393905    rs12086448    A    G    831.49    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=68;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=1.9648;MQ=59.32;MQ0=0;MQRankSum=0.72;QD=12.23;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=K379;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160393842_160394073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368061    GT:AD:DP:GQ:PL    0/1:33,35:68:99:861,0,860
1    160394173    rs12087593    A    G    82.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.52;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483408    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:112,0,28
1    160394937    rs17380127    A    C    249.71    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=34;Dels=0.0;FS=1.451;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.534;QD=7.34;ReadPosRankSum=-0.461;SNPEFF_AMINO_ACID_CHANGE=G445;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160394908_160398468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368061    GT:AD:DP:GQ:PL    0/1:20,14:34:99:280,0,643
1    160395003    rs17380141    G    A    441.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.171;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.482;QD=13.0;ReadPosRankSum=-1.033;SNPEFF_AMINO_ACID_CHANGE=P467;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160394908_160398468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VANGL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368061    GT:AD:DP:GQ:PL    0/1:17,17:34:99:472,0,556
1    160458782    rs3795327    A    G    139.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368055    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:172,15,0
1    160473270    rs6700440    T    C    1236.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368055    GT:AD:DP:GQ:PL    1/1:0,40:40:96.31:1269,96,0
1    160473286    rs17385407    G    T    1331.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368055    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1364,102,0
1    160473563    rs6700764    T    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368055    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
1    160519812    rs3832278    C    CA    1297.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=1;HaplotypeScore=197.4071;IndelType=I;MQ=51.6;MQ0=0;QD=41.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360056    GT:AD:DP:GQ:PL    1/1:6,25:31:90.30:1340,90,0
1    160519815    rs58960001    C    CT    1215.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=1;HaplotypeScore=176.6029;IndelType=I;MQ=52.53;MQ0=0;QD=43.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360056    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1258,84,0
1    160580807    rs349251    T    C    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355199    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    160582248    rs11265449    C    G    150.09    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=21.44;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355199    GT:AD:DP:GQ:PL    0/1:2,5:7:19.74:180,0,20
1    160585554    rs149160    C    G    869.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.8;SNPEFF_AMINO_ACID_CHANGE=S290T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160585526_160585558;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355199    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:902,66,0
1    160607127    .    C    A    552.68    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.067;DP=48;Dels=0.0;FS=1.248;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.136;QD=11.28;ReadPosRankSum=0.115;SNPEFF_AMINO_ACID_CHANGE=R90L;SNPEFF_CODON_CHANGE=cGt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160606981_160607319;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000235739    GT:AD:DP:GQ:PL    0/1:28,20:48:99:583,0,815
1    160616768    rs12076998    G    A    110.99    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.33;ReadPosRankSum=-0.421;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494463    GT:AD:DP:GQ:PL    0/1:5,4:9:99:141,0,147
1    160650913    rs4656926    A    G    190.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368045    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:223,18,0
1    160650938    rs6667145    C    T    182.88    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=16.63;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368045    GT:AD:DP:GQ:PL    0/1:4,7:11:99:213,0,126
1    160654786    rs1980606    G    A    1333.22    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.253;DB;DP=98;Dels=0.0;FS=5.269;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.982;QD=13.6;ReadPosRankSum=-0.828;SNPEFF_AMINO_ACID_CHANGE=G92;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160653309_160654979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD48;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368045    GT:AD:DP:GQ:PL    0/1:50,48:98:99:1363,0,1432
1    160717872    rs527733    T    G    149.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLAMF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359331    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:182,15,0
1    160722064    rs527342    A    G    774.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLAMF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488819    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:807,60,0
1    160766179    rs77433248    C    CT    573.41    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.884;DB;DP=54;FS=5.036;HRun=8;HaplotypeScore=163.1879;IndelType=I;MQ=60.14;MQ0=0;MQRankSum=-0.593;QD=10.62;ReadPosRankSum=-0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263285    GT:AD:DP:GQ:PL    0/1:32,22:54:99:612,0,594
1    160771761    rs1556517    C    A    33.70    QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5204;MQ=47.12;MQ0=0;MQRankSum=-0.312;QD=1.87;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474998    GT:AD:DP:GQ:PL    0/1:9,9:18:63.69:64,0,93
1    160786670    rs560681    A    G    844.97    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.008;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.783;QD=15.36;ReadPosRankSum=-0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471816    GT:AD:DP:GQ:PL    0/1:27,28:55:99:875,0,772
1    160788131    rs3817407    T    C    276.32    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.147;DB;DP=27;Dels=0.0;FS=10.922;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=1.0;QD=10.23;ReadPosRankSum=1.781;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471816    GT:AD:DP:GQ:PL    0/1:15,12:27:99:306,0,454
1    160788217    rs575217    T    A    174.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=14.55;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471816    GT:AD:DP:GQ:PL    0/1:6,6:12:99:205,0,211
1    160788270    rs508166    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    160789196    rs537540    A    C    1583.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7356;MQ=59.5;MQ0=0;QD=34.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471816    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1617,123,0
1    160789308    rs522897    C    T    172.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471816    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
1    160793442    rs474131    A    G    2907.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5678;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=V200;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160793297_160793586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368035    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2941,235,0
1    160793560    rs509749    A    G    3130.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.51;MQ0=0;QD=36.83;SNPEFF_AMINO_ACID_CHANGE=M240V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160793297_160793586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368035    GT:AD:DP:GQ:PL    1/1:0,85:85:99:3163,238,0
1    160793962    rs506081    G    C    3342.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.76;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263285    GT:AD:DP:GQ:PL    1/1:0,94:95:99:3343,241,0
1    160797323    rs577453    T    G    152.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=25.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322302    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:185,15,0
1    160797514    rs576334    C    G    2856.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322302    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2889,211,0
1    160797684    rs574610    A    G    1245    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=36.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322302    GT:AD:DP:GQ:PL    1/1:0,34:34:93.31:1278,93,0
1    160801046    rs480104    C    G    989.64    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.302;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7658;MQ=59.53;MQ0=0;MQRankSum=1.401;QD=20.2;ReadPosRankSum=2.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322302    GT:AD:DP:GQ:PL    0/1:18,31:49:99:1020,0,535
1    160803802    rs11265493    A    G    569.32    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.035;DB;DP=47;Dels=0.0;FS=7.817;HRun=0;HaplotypeScore=1.832;MQ=60.0;MQ0=0;MQRankSum=0.759;QD=12.11;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322302    GT:AD:DP:GQ:PL    0/1:22,25:47:99:599,0,718
1    160806019    rs35224927    C    G    276.84    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.364;DB;DP=24;Dels=0.0;FS=7.025;HRun=0;HaplotypeScore=1.6316;MQ=59.03;MQ0=0;MQRankSum=0.657;QD=11.54;ReadPosRankSum=-0.985;SNPEFF_AMINO_ACID_CHANGE=G195A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160805985_160806044;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD244;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322302    GT:AD:DP:GQ:PL    0/1:11,12:24:99:307,0,358
1    160811830    rs2990703    A    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322302    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    160846284    rs1333062    T    G    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.36;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:71,0,68
1    160848993    rs3766357    G    A    129.03    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.266;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.357;QD=7.59;ReadPosRankSum=-1.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464077    GT:AD:DP:GQ:PL    0/1:11,6:17:99:159,0,326
1    160849030    rs3766358    T    A    527.18    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.014;QD=13.18;ReadPosRankSum=0.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464077    GT:AD:DP:GQ:PL    0/1:23,17:40:99:557,0,727
1    160849060    rs3766359    G    A    857.91    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.688;DB;DP=69;Dels=0.0;FS=2.204;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.126;QD=12.43;ReadPosRankSum=0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464077    GT:AD:DP:GQ:PL    0/1:37,32:69:99:888,0,1043
1    160849082    rs3820094    A    G    835.94    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.194;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=9.72;ReadPosRankSum=-0.225;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464077    GT:AD:DP:GQ:PL    0/1:47,39:86:99:866,0,1434
1    160850280    rs4656957    G    A    1547.29    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.472;DB;DP=103;Dels=0.0;FS=0.974;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.442;QD=15.02;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464077    GT:AD:DP:GQ:PL    0/1:50,53:103:99:1577,0,1638
1    160850936    rs2236515    T    C    165.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.34;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.9;QD=6.14;ReadPosRankSum=0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464077    GT:AD:DP:GQ:PL    0/1:18,9:27:99:196,0,613
1    160851534    rs7532133    A    G    217.14    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;MQRankSum=-1.791;QD=16.7;ReadPosRankSum=1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:6,7:13:99:247,0,191
1    160851564    rs6427551    C    G    171.85    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.23;MQ0=0;MQRankSum=-0.181;QD=9.55;ReadPosRankSum=0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:11,7:18:99:202,0,368
1    160851594    rs111563946    GAAAAAAA    G    127.78    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.159;DB;DP=42;FS=0.0;HRun=21;HaplotypeScore=499.3501;IndelType=D;MQ=44.19;MQ0=0;MQRankSum=0.637;QD=3.04;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:22,10:42:99:167,0,1703
1    160851619    rs10908808    A    G    199.08    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.4852;MQ=45.72;MQ0=0;MQRankSum=-1.684;QD=4.15;ReadPosRankSum=1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:27,20:48:99:229,0,143
1    160851826    rs2274907    A    T    905.44    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=68;Dels=0.0;FS=2.188;HRun=0;HaplotypeScore=0.6651;MQ=58.23;MQ0=0;MQRankSum=-1.002;QD=13.32;ReadPosRankSum=-0.074;SNPEFF_AMINO_ACID_CHANGE=V109D;SNPEFF_CODON_CHANGE=gTc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160851747_160851994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:36,31:68:99:935,0,1051
1    160851894    rs2274908    G    A    759.62    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.207;DB;DP=54;Dels=0.0;FS=1.065;HRun=0;HaplotypeScore=1.7323;MQ=58.42;MQ0=0;MQRankSum=-0.147;QD=14.07;ReadPosRankSum=-0.026;SNPEFF_AMINO_ACID_CHANGE=H86;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160851747_160851994;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:26,28:54:99:790,0,819
1    160852022    rs2274909    C    T    529.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.195;DB;DP=42;Dels=0.0;FS=15.685;HRun=0;HaplotypeScore=0.5784;MQ=59.34;MQ0=0;MQRankSum=-0.629;QD=12.6;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:21,21:42:99:559,0,695
1    160852046    rs2274910    T    C    498.10    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.995;DB;DP=43;Dels=0.0;FS=11.742;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=11.58;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:23,20:43:99:528,0,636
1    160854445    rs2039415    T    C    570.16    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.521;QD=15.84;ReadPosRankSum=1.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:17,19:36:99:600,0,579
1    160854526    rs2297559    G    A    1055.62    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.859;DB;DP=82;Dels=0.0;FS=11.342;HRun=2;HaplotypeScore=1.5741;MQ=59.72;MQ0=0;MQRankSum=-1.233;QD=12.87;ReadPosRankSum=0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326245    GT:AD:DP:GQ:PL    0/1:42,40:82:99:1086,0,1314
1    160865612    rs112211905    A    C    1867.22    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.523;DB;DP=128;Dels=0.0;FS=1.4;HRun=0;HaplotypeScore=2.0756;MQ=59.85;MQ0=0;MQRankSum=-1.005;QD=14.59;ReadPosRankSum=-0.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-312J18.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425270    GT:AD:DP:GQ:PL    0/1:60,68:128:99:1897,0,1962
1    160920809    rs3829790    A    G    815.82    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.881;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.565;MQ=54.07;MQ0=0;MQRankSum=1.366;QD=8.0;ReadPosRankSum=-0.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368029    GT:AD:DP:GQ:PL    0/1:60,41:102:99:846,0,1573
1    160920813    rs790059    A    G    2816.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.565;MQ=54.63;MQ0=0;QD=27.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368029    GT:AD:DP:GQ:PL    1/1:0,102:103:99:2849,223,0
1    160920966    rs6680969    C    T    713.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=56;Dels=0.0;FS=1.01;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.412;QD=12.75;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=R103H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_160920833_160921080;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368029    GT:AD:DP:GQ:PL    0/1:28,28:56:99:744,0,798
1    160921230    rs4656971    T    G    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.99;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368029    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,147
1    160968609    rs41269993    G    A    406.39    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=4.299;DB;DP=29;Dels=0.0;FS=6.495;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=14.01;ReadPosRankSum=0.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470694    GT:AD:DP:GQ:PL    0/1:15,14:29:99:436,0,435
1    160969008    rs3831190    T    TG    1982.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=4;HaplotypeScore=113.6845;IndelType=I;MQ=59.53;MQ0=0;QD=38.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470694    GT:AD:DP:GQ:PL    1/1:4,48:52:99:2025,150,0
1    160969110    rs2297222    T    C    2637.65    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=1.649;DB;DP=193;Dels=0.0;FS=1.946;HRun=4;HaplotypeScore=3.4401;MQ=59.28;MQ0=0;MQRankSum=0.429;QD=13.67;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470694    GT:AD:DP:GQ:PL    0/1:96,97:193:99:2668,0,3041
1    160969585    rs790056    C    T    2212.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470694    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2246,181,0
1    160969930    rs869985    A    C    441.14    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.007;DB;DP=52;Dels=0.0;FS=1.29;HRun=1;HaplotypeScore=0.9469;MQ=59.56;MQ0=0;MQRankSum=-0.01;QD=8.48;ReadPosRankSum=-1.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470694    GT:AD:DP:GQ:PL    0/1:35,17:52:99:471,0,987
1    160970968    rs2297221    G    A    643.49    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=2.407;DB;DP=37;Dels=0.0;FS=3.012;HRun=1;HaplotypeScore=1.5774;MQ=59.38;MQ0=0;MQRankSum=0.966;QD=17.39;ReadPosRankSum=0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289779    GT:AD:DP:GQ:PL    0/1:16,21:37:99:673,0,471
1    160971015    rs2297220    G    C    740.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=40;Dels=0.0;FS=1.45;HRun=0;HaplotypeScore=0.9665;MQ=59.42;MQ0=0;MQRankSum=-1.288;QD=18.52;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289779    GT:AD:DP:GQ:PL    0/1:16,24:40:99:771,0,287
1    160971146    rs790055    A    G    1182.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=58.13;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289779    GT:AD:DP:GQ:PL    1/1:0,35:35:90.27:1215,90,0
1    160971155    rs2297219    G    C    583.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.038;DB;DP=33;Dels=0.0;FS=7.935;HRun=0;HaplotypeScore=1.7791;MQ=58.01;MQ0=0;MQRankSum=-0.227;QD=17.68;ReadPosRankSum=1.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289779    GT:AD:DP:GQ:PL    0/1:15,18:33:99:613,0,403
1    160990878    rs28365978    C    T    52.20    QDFilter2    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=1.547;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.714;QD=1.49;ReadPosRankSum=-0.397;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_160990800_160990968;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368026    GT:AD:DP:GQ:PL    0/1:11,24:35:82.20:82,0,293
1    160990906    rs2481085    G    A    148.72    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.344;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.394;QD=5.31;ReadPosRankSum=-0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289779    GT:AD:DP:GQ:PL    0/1:19,9:28:99:179,0,633
1    161010762    rs2073658    C    T    67.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.59;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491629    GT:AD:DP:GQ:PL    0/1:4,3:7:97.15:97,0,136
1    161010774    rs2516841    A    G    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491629    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    161010791    rs2073657    C    T    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491629    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    161011317    rs2516840    A    G    434.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529476    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:467,39,0
1    161011355    rs2073656    G    C    178.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=15;Dels=0.0;FS=6.41;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=11.87;ReadPosRankSum=0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529476    GT:AD:DP:GQ:PL    0/1:9,6:15:99:208,0,325
1    161011716    rs2774276    G    C    558.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368019    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:592,45,0
1    161012590    rs2073655    G    A    1034.63    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.65;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.7;MQ0=0;MQRankSum=-0.081;QD=13.61;ReadPosRankSum=-2.049;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368013    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1065,0,1141
1    161013121    rs2516839    C    T    1634.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.989;MQ=59.53;MQ0=0;MQRankSum=-0.505;QD=33.36;ReadPosRankSum=1.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368013    GT:AD:DP:GQ:PL    1/1:1,48:49:93.85:1668,94,0
1    161017556    rs2774279    C    T    1119.57    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.955;DB;DP=77;Dels=0.0;FS=0.874;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.006;QD=14.54;ReadPosRankSum=0.801;SNPEFF_AMINO_ACID_CHANGE=R1085;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161016738_161019124;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368013    GT:AD:DP:GQ:PL    0/1:36,41:77:99:1150,0,1059
1    161019040    rs3813609    G    C    3368.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=59.78;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=L414V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161016739_161019124;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368015    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3368,268,0
1    161019621    rs11588189    C    T    34.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.74;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368018    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:65,0,68
1    161020997    rs55728374    C    T    701.34    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.335;DB;DP=49;Dels=0.0;FS=1.11;HRun=0;HaplotypeScore=1.7608;MQ=59.45;MQ0=0;MQRankSum=-0.093;QD=14.03;ReadPosRankSum=-0.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368018    GT:AD:DP:GQ:PL    0/1:26,23:49:99:731,0,750
1    161021893    rs12749496    G    C    209.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368018    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
1    161022380    rs4396136    G    A    3066.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=39.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368018    GT:AD:DP:GQ:PL    1/1:0,77:77:99:3100,229,0
1    161022639    rs3813610    C    G    494.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368018    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:528,42,0
1    161023353    rs3829791    T    C    56.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471492    GT:AD:DP:GQ:PL    1/1:0,3:3:9:89,9,0
1    161043735    rs4656285    A    C    249.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=27.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460234    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:283,27,0
1    161043764    rs4656978    G    A    195.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460234    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
1    161047125    rs67993510    CTATA    C    4090.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;FS=0.0;HRun=0;HaplotypeScore=401.3487;IndelType=D;MQ=54.53;MQ0=0;QD=53.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460234    GT:AD:DP:GQ:PL    1/1:1,75:76:99:4090,223,0
1    161049358    rs3820097    G    A    418.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368012    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:451,36,0
1    161068836    rs11576830    A    C    259.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.64;SNPEFF_AMINO_ACID_CHANGE=S171R;SNPEFF_CODON_CHANGE=Agc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161068184_161068852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHDC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368011    GT:AD:DP:GQ:PL    1/1:0,12:12:24.07:293,24,0
1    161088695    rs41270019    A    C    1042.81    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.256;DB;DP=71;Dels=0.0;FS=2.143;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.733;QD=14.69;ReadPosRankSum=-0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DEDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368005    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1073,0,990
1    161089450    rs111473243    C    CTAAACT    1368.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=53.7048;IndelType=I;MQ=37.69;MQ0=0;QD=97.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DEDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368005    GT:AD:DP:GQ:PL    1/1:1,11:14:42.14:1411,42,0
1    161091814    rs66849321    T    TA    190.41    PASS    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=51;FS=0.0;HRun=17;HaplotypeScore=430.9988;IndelType=I;MQ=43.82;MQ0=0;MQRankSum=-1.28;QD=3.73;ReadPosRankSum=-1.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DEDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463227    GT:AD:DP:GQ:PL    0/1:36,10:51:9.09:229,0,9
1    161126975    rs12031437    C    G    707.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368003    GT:AD:DP:GQ:PL    1/1:0,23:23:63.16:741,63,0
1    161130701    rs34779722    C    T    385.28    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.75;DB;DP=30;Dels=0.0;FS=8.916;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.875;QD=12.84;ReadPosRankSum=0.553;SNPEFF_AMINO_ACID_CHANGE=P91S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161130410_161131030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289865    GT:AD:DP:GQ:PL    0/1:14,16:30:99:415,0,419
1    161136843    rs2301287    C    G    1269.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=32.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310413    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1302,102,0
1    161141432    rs6779    C    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367997    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    161142230    rs141311167    GA    G    150.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=9;HaplotypeScore=21.8993;IndelType=D;MQ=56.62;MQ0=0;QD=21.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460415    GT:AD:DP:GQ:PL    1/1:0,7:7:21.01:192,21,0
1    161143312    rs11579514    T    C    3032.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.75;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460415    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3066,226,0
1    161143969    rs11265561    A    G    198.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460415    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
1    161162173    rs7512012    G    A    115.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367995    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
1    161163037    rs4233367    T    C    462.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=Q626R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161163003_161163178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367996    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:495,39,0
1    161163633    rs3813622    C    T    699.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367995    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:732,54,0
1    161164166    rs11265564    A    G    66.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367995    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
1    161166723    rs35630547    G    T    825.29    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.703;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7987;MQ=60.0;MQ0=0;MQRankSum=0.069;QD=16.18;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367995    GT:AD:DP:GQ:PL    0/1:21,30:51:99:855,0,684
1    161167698    rs4589131    T    G    361.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367995    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:394,30,0
1    161168004    rs33941127    C    T    452.67    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=2.501;DB;DP=48;Dels=0.0;FS=2.554;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.216;QD=9.43;ReadPosRankSum=0.453;SNPEFF_AMINO_ACID_CHANGE=S138;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161167785_161168843;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367995    GT:AD:DP:GQ:PL    0/1:31,17:48:99:483,0,877
1    161176137    rs4656993    A    G    573.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475570    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:607,45,0
1    161179877    rs4656994    G    A    559.32    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.481;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.99;MQ=59.51;MQ0=0;MQRankSum=-0.524;QD=11.9;ReadPosRankSum=0.374;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473321    GT:AD:DP:GQ:PL    0/1:26,21:47:99:589,0,755
1    161183516    rs1136207    C    T    1072.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=78;Dels=0.0;FS=6.822;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.586;QD=13.75;ReadPosRankSum=0.199;SNPEFF_AMINO_ACID_CHANGE=A430;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161183439_161183522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367993    GT:AD:DP:GQ:PL    0/1:39,39:78:99:1103,0,1090
1    161184059    rs10629771    C    CTG    269.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=70.2356;IndelType=I;MQ=57.26;MQ0=0;QD=24.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467295    GT:AD:DP:GQ:PL    1/1:3,7:11:22.31:311,22,0
1    161184097    rs1136224    A    G    152.75    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.198;QD=21.82;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467295    GT:AD:DP:GQ:PL    0/1:2,5:7:22.59:183,0,23
1    161185058    rs2070901    G    T    668.68    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=43;Dels=0.0;FS=1.786;HRun=1;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=-0.88;QD=15.55;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367993    GT:AD:DP:GQ:PL    0/1:21,22:43:99:699,0,611
1    161187665    rs2070902    C    T    381.61    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.27;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.045;QD=19.08;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367990    GT:AD:DP:GQ:PL    0/1:8,12:20:99:412,0,254
1    161192511    rs5085    C    G    249.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.766;QD=16.63;ReadPosRankSum=0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCER1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289902    GT:AD:DP:GQ:PL    0/1:6,9:15:99:279,0,193
1    161192845    rs72170134    CCACACA    C    451.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=225.1036;IndelType=D;MQ=46.85;MQ0=0;QD=13.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCER1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289902    GT:AD:DP:GQ:PL    1/1:24,5:33:27.09:493,27,0
1    161196166    rs3813628    A    C    32.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=8.25;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367979    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:63,0,32
1    161200487    rs4073054    C    A    151.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491193    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:184,15,0
1    161200586    rs2307418    T    G    250.20    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.301;QD=9.62;ReadPosRankSum=1.998;SNPEFF_AMINO_ACID_CHANGE=R283;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161200135_161200708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506209    GT:AD:DP:GQ:PL    0/1:14,12:26:99:280,0,474
1    161201350    rs11265567    G    T    266.81    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.473;DB;DP=22;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.033;QD=12.13;ReadPosRankSum=0.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491193    GT:AD:DP:GQ:PL    0/1:12,10:22:99:297,0,435
1    161201352    rs11265568    G    A    272.39    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=22;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.55;QD=12.38;ReadPosRankSum=0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491193    GT:AD:DP:GQ:PL    0/1:12,10:22:99:302,0,422
1    161202605    rs2307424    G    A    723.06    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=3.776;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=14.46;ReadPosRankSum=0.642;SNPEFF_AMINO_ACID_CHANGE=P105;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161202597_161202736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515621    GT:AD:DP:GQ:PL    0/1:23,27:50:99:753,0,602
1    161276434    rs6674383    A    G    540.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336559    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:573,45,0
1    161479745    rs1801274    A    G    576.94    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.903;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.85;MQ0=0;MQRankSum=-0.187;QD=10.12;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=H166R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161479610_161479864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367972    GT:AD:DP:GQ:PL    0/1:34,23:57:99:607,0,1135
1    161487863    rs143182858    C    T    597.08    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.296;DB;DP=87;Dels=0.0;FS=1.047;HRun=0;HaplotypeScore=0.8667;MQ=30.47;MQ0=14;MQRankSum=0.04;QD=6.86;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=P28;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161487765_161488380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000461298    GT:AD:DP:GQ:PL    0/1:49,38:87:99:627,0,792
1    161488017    rs150991486    T    C    365.01    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.312;DB;DP=31;Dels=0.0;FS=6.463;HRun=0;HaplotypeScore=0.0;MQ=51.24;MQ0=0;MQRankSum=0.296;QD=11.77;ReadPosRankSum=0.613;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537821    GT:AD:DP:GQ:PL    0/1:16,15:31:99:395,0,449
1    161495040    rs63749092    C    T    174.43    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.75;MQ0=0;MQRankSum=-0.312;QD=9.69;ReadPosRankSum=-0.66;SNPEFF_AMINO_ACID_CHANGE=L174F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161494582_161496582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545155    GT:AD:DP:GQ:PL    0/1:10,8:18:99:204,0,151
1    161495477    rs72633678    A    T    343.45    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=27;Dels=0.0;FS=17.975;HRun=0;HaplotypeScore=0.0;MQ=45.28;MQ0=0;MQRankSum=1.237;QD=12.72;ReadPosRankSum=1.092;SNPEFF_AMINO_ACID_CHANGE=T319;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161494582_161496582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545155    GT:AD:DP:GQ:PL    0/1:13,14:27:99:373,0,399
1    161495885    rs404508    T    C    337.83    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.801;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=57.07;MQ0=0;MQRankSum=0.747;QD=8.66;ReadPosRankSum=-0.893;SNPEFF_AMINO_ACID_CHANGE=T455;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161494582_161496582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545155    GT:AD:DP:GQ:PL    0/1:25,14:39:99:368,0,888
1    161496134    rs753856    C    G    58.85    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.11;MQ0=0;MQRankSum=-2.546;QD=3.92;ReadPosRankSum=-0.979;SNPEFF_AMINO_ACID_CHANGE=D538E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161494582_161496582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545155    GT:AD:DP:GQ:PL    0/1:11,4:15:88.85:89,0,342
1    161514542    rs396991    A    C    366.63    MQFilter40    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.838;DB;DP=41;Dels=0.0;FS=1.352;HRun=0;HaplotypeScore=0.0;MQ=39.68;MQ0=4;MQRankSum=-2.041;QD=8.94;ReadPosRankSum=2.072;SNPEFF_AMINO_ACID_CHANGE=F176V;SNPEFF_CODON_CHANGE=Ttt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161514491_161514748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367967    GT:AD:DP:GQ:PL    0/1:18,23:41:99:397,0,543
1    161518214    rs148181339    T    C    269.98    MQFilter40;QDFilter2    AB=0.751;AC=1;AF=0.50;AN=2;BaseQRankSum=3.357;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=30.69;MQ0=32;MQRankSum=-3.362;QD=1.52;ReadPosRankSum=-1.031;SNPEFF_AMINO_ACID_CHANGE=I105V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161518211_161518465;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442336    GT:AD:DP:GQ:PL    0/1:133,44:178:99:300,0,2925
1    161518336    rs77144485    C    T    162.97    QDFilter2    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=0.767;DB;DP=217;DS;Dels=0.0;FS=8.525;HRun=1;HaplotypeScore=2.3404;MQ=44.87;MQ0=25;MQRankSum=-5.781;QD=0.75;ReadPosRankSum=-0.94;SNPEFF_AMINO_ACID_CHANGE=S100N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161518211_161518465;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443193    GT:AD:DP:GQ:PL    0/1:167,48:217:99:193,0,4670
1    161518908    rs138032965    C    T    83.83    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.25;MQ0=0;MQRankSum=0.322;QD=10.48;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367967    GT:AD:DP:GQ:PL    0/1:3,5:8:91.70:114,0,92
1    161559256    rs114945036    C    T    53.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.54;MQ0=1;MQRankSum=0.0;QD=6.68;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:4,4:8:83.42:83,0,148
1    161559327    rs3933769    A    G    197.24    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.558;DB;DP=28;Dels=0.0;FS=2.207;HRun=0;HaplotypeScore=0.0;MQ=55.65;MQ0=0;MQRankSum=-0.817;QD=7.04;ReadPosRankSum=1.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:16,11:28:99:227,0,566
1    161559571    rs138747765    C    T    307.49    MQFilter40    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2428;MQ=23.16;MQ0=21;MQRankSum=-0.547;QD=5.21;ReadPosRankSum=-1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502411    GT:AD:DP:GQ:PL    0/1:38,20:59:99:337,0,510
1    161561287    rs151302833    A    G    143.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.19;MQ0=6;QD=10.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465075    GT:AD:DP:GQ:PL    1/1:0,13:14:18.03:177,18,0
1    161561676    rs72700080    T    C    91.51    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.05;MQ0=1;MQRankSum=-0.731;QD=15.25;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465075    GT:AD:DP:GQ:PL    0/1:1,5:6:25.61:121,0,26
1    161561681    rs72700082    C    T    92.02    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.05;MQ0=1;MQRankSum=-0.731;QD=15.34;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465075    GT:AD:DP:GQ:PL    0/1:1,5:6:17.46:122,0,17
1    161561729    rs61801811    C    T    50.62    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=29.93;MQ0=1;MQRankSum=0.248;QD=5.06;ReadPosRankSum=1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465075    GT:AD:DP:GQ:PL    0/1:6,4:10:80.61:81,0,176
1    161561734    rs1771555    G    A    86.99    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=29.93;MQ0=1;MQRankSum=1.159;QD=8.7;ReadPosRankSum=1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465075    GT:AD:DP:GQ:PL    0/1:5,5:10:99:117,0,135
1    161565324    rs61801822    C    T    1129.45    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.436;DB;DP=110;Dels=0.0;FS=1.764;HRun=4;HaplotypeScore=2.911;MQ=50.54;MQ0=3;MQRankSum=-5.26;QD=10.27;ReadPosRankSum=-2.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465075    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1159,0,1916
1    161565479    rs111504845    G    A    776.33    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=54.46;MQ0=0;MQRankSum=-0.769;QD=15.84;ReadPosRankSum=1.247;SNPEFF_AMINO_ACID_CHANGE=L45;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161565343_161565762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543859    GT:AD:DP:GQ:PL    0/1:21,28:49:99:806,0,716
1    161569419    rs430178    C    G    263.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.6;MQ0=9;QD=10.98;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000466542    GT:AD:DP:GQ:PL    1/1:0,24:24:30.04:297,30,0
1    161576227    rs145679054    C    G    114.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.88;MQ0=19;QD=4.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467903    GT:AD:DP:GQ:PL    1/1:15,12:27:15.02:147,15,0
1    161577657    rs61802306    G    A    240.65    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=14;Dels=0.0;FS=6.929;HRun=0;HaplotypeScore=0.0;MQ=52.18;MQ0=0;MQRankSum=0.495;QD=17.19;ReadPosRankSum=-0.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467903    GT:AD:DP:GQ:PL    0/1:4,10:14:99:271,0,99
1    161577669    rs61802307    G    A    226.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.78;MQ0=0;QD=20.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FCGR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467903    GT:AD:DP:GQ:PL    1/1:0,11:11:21.06:260,21,0
1    161594100    rs61803007    C    T    127.48    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.07;MQ0=0;MQRankSum=1.256;QD=9.81;ReadPosRankSum=-1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533780    GT:AD:DP:GQ:PL    0/1:8,5:13:99:157,0,282
1    161594226    rs61803008    C    T    1612.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=42.74;MQ0=0;QD=25.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533780    GT:AD:DP:GQ:PL    1/1:0,62:63:99:1646,135,0
1    161594246    rs61803009    G    T    2405.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6132;MQ=43.93;MQ0=0;QD=28.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533780    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2438,193,0
1    161594561    rs61803012    C    G    212.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.83;MQ0=0;QD=26.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533780    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:246,18,0
1    161596283    rs418215    G    A    206.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.11;MQ0=1;QD=20.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534489    GT:AD:DP:GQ:PL    1/1:0,10:10:21.05:239,21,0
1    161599693    rs76714703    T    C    466.87    MQFilter40    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.668;DB;DP=64;Dels=0.0;FS=8.923;HRun=0;HaplotypeScore=1.6208;MQ=19.83;MQ0=21;MQRankSum=-0.14;QD=7.29;ReadPosRankSum=-1.264;SNPEFF_AMINO_ACID_CHANGE=N101S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161599568_161599825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531221    GT:AD:DP:GQ:PL    0/1:18,44:64:99:497,0,190
1    161600345    rs145831350    C    T    74.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.51;MQ0=0;QD=24.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
1    161600744    rs74127076    C    T    73.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.33;MQ0=0;MQRankSum=-0.729;QD=8.16;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:5,4:9:99:103,0,144
1    161600787    rs3883928    G    C    540.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.04;MQ0=2;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:573,48,0
1    161600792    rs76732376    A    C    322.58    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.307;DB;DP=21;Dels=0.0;FS=5.006;HRun=0;HaplotypeScore=0.0;MQ=39.4;MQ0=2;MQRankSum=-1.973;QD=15.36;ReadPosRankSum=-1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:6,15:21:99:353,0,181
1    161600832    rs3883934    G    T    443.96    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.128;DB;DP=38;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=50.44;MQ0=2;MQRankSum=2.471;QD=11.68;ReadPosRankSum=-1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:23,15:38:99:474,0,646
1    161600995    rs34085961    C    T    1199.95    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.287;DB;DP=94;Dels=0.0;FS=4.402;HRun=1;HaplotypeScore=1.367;MQ=57.46;MQ0=0;MQRankSum=-1.522;QD=12.77;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:51,43:94:99:1230,0,1497
1    161601118    rs61803026    G    C    562.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.42;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:596,48,0
1    161601133    rs61803027    T    C    384.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:418,33,0
1    161601173    rs34322334    A    T    58.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=50.44;MQ0=0;MQRankSum=-0.358;QD=11.65;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:2,3:5:67.95:88,0,68
1    161601231    rs35293629    A    G    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:74,0,29
1    161633527    rs138450690    T    C    41.05    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.51;MQ0=3;MQRankSum=0.727;QD=5.13;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236937    GT:AD:DP:GQ:PL    0/1:3,5:8:15.65:71,0,16
1    161642774    .    T    G    38.28    MQFilter40;QDFilter2    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DP=22;Dels=0.0;FS=26.946;HRun=2;HaplotypeScore=0.0;MQ=39.05;MQ0=3;MQRankSum=-0.919;QD=1.74;ReadPosRankSum=0.071;SNPEFF_AMINO_ACID_CHANGE=V127G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161642765_161643019;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367960    GT:AD:DP:GQ:PL    0/1:10,12:22:68.28:68,0,232
1    161644976    rs1674758    C    A    62.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.41;MQ0=0;MQRankSum=-1.231;QD=12.49;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428605    GT:AD:DP:GQ:PL    0/1:2,3:5:66.92:92,0,67
1    161676904    rs1340977    T    C    76.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.86;ReadPosRankSum=1.754;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294796    GT:AD:DP:GQ:PL    0/1:4,3:7:99:106,0,144
1    161676970    rs1340978    A    G    340.26    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.033;DB;DP=23;Dels=0.0;FS=2.262;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.363;QD=14.79;ReadPosRankSum=0.429;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294796    GT:AD:DP:GQ:PL    0/1:10,12:23:99:370,0,355
1    161680413    rs112039702    GA    G    199.80    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=3.324;DB;DP=33;FS=0.0;HRun=11;HaplotypeScore=155.1563;IndelType=D;MQ=60.29;MQ0=0;MQRankSum=-1.383;QD=6.05;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236938    GT:AD:DP:GQ:PL    0/1:20,13:33:99:239,0,366
1    161680432    rs17405152    A    G    513.40    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=33;Dels=0.0;FS=3.387;HRun=1;HaplotypeScore=0.7887;MQ=59.63;MQ0=0;MQRankSum=-1.609;QD=15.56;ReadPosRankSum=0.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236938    GT:AD:DP:GQ:PL    0/1:15,18:33:99:543,0,495
1    161680518    rs61801161    T    A    723.49    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.41;DB;DP=73;Dels=0.0;FS=0.957;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.548;QD=9.91;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=F31L;SNPEFF_CODON_CHANGE=ttT/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161680505_161680522;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540926    GT:AD:DP:GQ:PL    0/1:43,30:73:99:753,0,1176
1    161680786    rs12043179    T    C    279.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.928;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=13.95;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236938    GT:AD:DP:GQ:PL    0/1:10,10:20:99:309,0,364
1    161680791    rs12043181    T    C    284.07    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.176;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.951;QD=13.53;ReadPosRankSum=-0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236938    GT:AD:DP:GQ:PL    0/1:10,11:21:99:314,0,349
1    161681661    rs1105238    C    G    2154.59    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.953;DB;DP=154;Dels=0.0;FS=5.309;HRun=0;HaplotypeScore=2.7267;MQ=59.1;MQ0=0;MQRankSum=-0.928;QD=13.9;ReadPosRankSum=-1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465403    GT:AD:DP:GQ:PL    0/1:71,83:154:99:2185,0,2323
1    161681780    rs2275603    A    G    1918.95    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.077;DB;DP=197;Dels=0.0;FS=0.585;HRun=1;HaplotypeScore=3.1726;MQ=59.06;MQ0=0;MQRankSum=-1.626;QD=9.74;ReadPosRankSum=0.724;SNPEFF_AMINO_ACID_CHANGE=S114G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161681724_161682008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546024    GT:AD:DP:GQ:PL    0/1:123,74:197:99:1949,0,3813
1    161681848    rs4301614    C    T    1878.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.72;DB;DP=119;Dels=0.0;FS=2.846;HRun=2;HaplotypeScore=2.7569;MQ=58.63;MQ0=0;MQRankSum=0.926;QD=15.79;ReadPosRankSum=-0.137;SNPEFF_AMINO_ACID_CHANGE=S119;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161681724_161682008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309691    GT:AD:DP:GQ:PL    0/1:51,68:119:99:1909,0,1514
1    161693003    rs4657093    T    C    291.38    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=18.21;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336830    GT:AD:DP:GQ:PL    0/1:7,9:16:99:321,0,230
1    161695639    rs7520519    G    T    478.69    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.841;DB;DP=31;Dels=0.0;FS=9.395;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.419;QD=15.44;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A105;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161695611_161695877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367944    GT:AD:DP:GQ:PL    0/1:13,18:31:99:509,0,351
1    161697000    .    T    C    173.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=58.2;MQ0=0;MQRankSum=0.467;QD=13.36;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCRLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336830    GT:AD:DP:GQ:PL    0/1:6,6:13:99:204,0,190
1    161721351    rs7540096    A    G    528.49    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.918;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=61.04;MQ0=0;MQRankSum=-1.727;QD=17.05;ReadPosRankSum=0.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUSP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367943    GT:AD:DP:GQ:PL    0/1:14,17:31:99:558,0,501
1    161721402    .    G    GT    662.46    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.707;DP=84;FS=1.595;HRun=11;HaplotypeScore=296.5071;IndelType=I;MQ=60.34;MQ0=0;MQRankSum=-0.586;QD=7.89;ReadPosRankSum=-1.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUSP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367943    GT:AD:DP:GQ:PL    0/1:51,30:84:99:701,0,771
1    161721707    rs1063178    C    T    859.29    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=3.801;DB;DP=61;Dels=0.0;FS=7.248;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.015;QD=14.09;ReadPosRankSum=1.623;SNPEFF_AMINO_ACID_CHANGE=Y170;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161721656_161721774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUSP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367943    GT:AD:DP:GQ:PL    0/1:29,32:61:99:889,0,799
1    161722272    rs10917852    C    A    1754.94    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.375;DB;DP=99;Dels=0.0;FS=3.392;HRun=0;HaplotypeScore=0.7887;MQ=59.53;MQ0=0;MQRankSum=1.069;QD=17.73;ReadPosRankSum=0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUSP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490591    GT:AD:DP:GQ:PL    0/1:43,56:99:99:1785,0,1257
1    161722779    rs35439833    C    CAAA    1128.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=10;HaplotypeScore=128.6383;IndelType=I;MQ=48.78;MQ0=0;QD=45.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUSP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490591    GT:AD:DP:GQ:PL    1/1:8,15:25:69.17:1170,69,0
1    161736035    rs2298019    A    G    276.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367942    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:309,24,0
1    161822959    rs2340717    C    T    446.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367942    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:480,36,0
1    161823011    rs2257107    T    A    278.60    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=23;Dels=0.0;FS=4.993;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=12.11;ReadPosRankSum=1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367942    GT:AD:DP:GQ:PL    0/1:11,12:23:99:309,0,395
1    161823197    rs112400651    G    GT    152.76    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=19.15;IndelType=I;MQ=61.34;MQ0=0;MQRankSum=-0.322;QD=19.1;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367942    GT:AD:DP:GQ:PL    0/1:3,5:8:85.02:192,0,85
1    161832834    rs2340719    G    A    326.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476437    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:359,27,0
1    161833233    rs3767632    G    A    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476437    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,75
1    161928327    rs9482    A    G    758.29    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.882;DB;DP=69;Dels=0.0;FS=0.935;HRun=1;HaplotypeScore=0.7887;MQ=59.67;MQ0=0;MQRankSum=-0.214;QD=10.99;ReadPosRankSum=-0.092;SNPEFF_AMINO_ACID_CHANGE=S632;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161928236_161933860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367942    GT:AD:DP:GQ:PL    0/1:41,28:69:99:788,0,1289
1    161928568    rs13401    G    A    87.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=7.32;ReadPosRankSum=-0.583;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367942    GT:AD:DP:GQ:PL    0/1:6,6:12:99:118,0,212
1    161954365    rs9427066    C    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OLFML2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294794    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
1    161954385    rs56084426    A    G    42.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=10.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OLFML2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294794    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:73,0,32
1    161954448    rs12726227    C    T    44.94    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.505;QD=3.0;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OLFML2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294794    GT:AD:DP:GQ:PL    0/1:12,3:15:74.93:75,0,371
1    161967681    rs2499836    A    G    1606.79    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=1.292;DB;DP=132;Dels=0.0;FS=2.795;HRun=0;HaplotypeScore=3.3178;MQ=59.65;MQ0=0;MQRankSum=0.298;QD=12.17;ReadPosRankSum=-0.122;SNPEFF_AMINO_ACID_CHANGE=W470R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161967615_161968139;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OLFML2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294794    GT:AD:DP:GQ:PL    0/1:68,61:132:99:1637,0,2126
1    161976234    rs12022536    A    G    1216.72    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.29;DB;DP=78;Dels=0.0;FS=6.253;HRun=0;HaplotypeScore=2.4317;MQ=59.39;MQ0=0;MQRankSum=0.444;QD=15.6;ReadPosRankSum=0.883;SNPEFF_AMINO_ACID_CHANGE=N192;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_161976087_161976263;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OLFML2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294794    GT:AD:DP:GQ:PL    0/1:34,44:78:99:1247,0,945
1    161976272    rs34863451    G    GA    607.38    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=2.535;DB;DP=53;FS=3.536;HRun=10;HaplotypeScore=247.7918;IndelType=I;MQ=59.72;MQ0=0;MQRankSum=-0.355;QD=11.46;ReadPosRankSum=-1.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OLFML2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294794    GT:AD:DP:GQ:PL    0/1:26,27:53:99:646,0,328
1    162302635    rs347306    T    C    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.7;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361897    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,111
1    162302689    rs347307    C    T    137.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=13.71;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361897    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,180
1    162313518    rs3751285    A    G    382.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.308;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.103;QD=14.72;ReadPosRankSum=-0.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361897    GT:AD:DP:GQ:PL    0/1:13,13:26:99:413,0,474
1    162313597    rs347278    T    C    2587.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.2337;MQ=59.67;MQ0=0;QD=31.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361897    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2620,196,0
1    162313735    rs3751284    C    T    561.06    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.739;DB;DP=43;Dels=0.0;FS=1.645;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=0.134;QD=13.05;ReadPosRankSum=0.304;SNPEFF_AMINO_ACID_CHANGE=S183;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_162313625_162313766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1AP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530878    GT:AD:DP:GQ:PL    0/1:23,20:43:99:591,0,626
1    162335424    rs1964052    T    C    496.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361897    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:530,42,0
1    162335500    rs348623    T    C    31.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=6.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361897    GT:AD:DP:GQ:PL    1/1:0,5:5:6.01:63,6,0
1    162343774    rs7512126    A    G    1371.25    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.267;DB;DP=123;Dels=0.0;FS=9.32;HRun=1;HaplotypeScore=2.5367;MQ=59.66;MQ0=0;MQRankSum=-1.219;QD=11.15;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf111;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493255    GT:AD:DP:GQ:PL    0/1:63,60:123:99:1401,0,1933
1    162344102    rs2282397    C    T    1632.79    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.115;DB;DP=108;Dels=0.0;FS=4.806;HRun=0;HaplotypeScore=1.4679;MQ=59.57;MQ0=0;MQRankSum=-0.972;QD=15.12;ReadPosRankSum=1.678;SNPEFF_AMINO_ACID_CHANGE=R174;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_162343515_162344406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf111;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367935    GT:AD:DP:GQ:PL    0/1:52,56:108:99:1663,0,1565
1    162344390    rs164159    A    G    1950.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.46;SNPEFF_AMINO_ACID_CHANGE=D78;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_162343515_162344406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf111;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367935    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1983,147,0
1    162345091    rs164181    G    A    1567.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=A69V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_162345080_162345193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf111;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367935    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1600,120,0
1    162345218    rs190242016    G    A    195    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.721;QD=10.83;ReadPosRankSum=-1.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361897    GT:AD:DP:GQ:PL    0/1:11,7:18:99:225,0,401
1    162352819    rs1123005    A    G    59.55    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-1.398;QD=5.41;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-565P22.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431696    GT:AD:DP:GQ:PL    0/1:7,4:11:89.54:90,0,225
1    162367235    rs164124    G    A    271.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359567    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:304,24,0
1    162369140    rs348625    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493550    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    162372718    rs3121196    G    A    272.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=54.65;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359567    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:306,24,0
1    162470164    rs10616397    AGGG    A    328.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=52.2562;IndelType=D;MQ=54.75;MQ0=0;QD=46.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489294    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:371,21,0
1    162470191    rs2342714    C    T    198.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.94;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489294    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
1    162470503    rs905718    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489294    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    162470961    rs35331308    A    AT    197.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=11;HaplotypeScore=18.483;IndelType=I;MQ=63.51;MQ0=0;QD=21.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489294    GT:AD:DP:GQ:PL    1/1:1,8:9:24.04:240,24,0
1    162722846    rs1632311    C    G    1357.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367921    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1391,108,0
1    162725655    rs1115570    A    C    117.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415555    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
1    162731404    rs2684867    C    T    134.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367921    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
1    162736734    rs1780002    G    C    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367921    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
1    162736821    rs36156581    G    GA    387.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DB;DP=20;FS=0.0;HRun=11;HaplotypeScore=334.2879;IndelType=I;MQ=33.42;MQ0=0;MQRankSum=0.0;QD=19.37;ReadPosRankSum=1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367921    GT:AD:DP:GQ:PL    1/1:5,15:20:24.86:429,25,0
1    162736851    rs5778292    G    GAAAA    2722.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=4;HaplotypeScore=507.1613;IndelType=I;MQ=38.8;MQ0=0;QD=66.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367921    GT:AD:DP:GQ:PL    1/1:2,32:41:99:2764,120,0
1    162740327    rs1780003    T    C    1209.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.01;SNPEFF_AMINO_ACID_CHANGE=V120A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_162740092_162740526;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458105    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1242,99,0
1    162742180    rs1704762    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458105    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    162743418    rs1355287    G    T    1601.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458105    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1634,120,0
1    162748588    rs907074    C    A    573.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367921    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:606,48,0
1    162749761    rs1510315    T    C    844.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367921    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:878,66,0
1    162760551    rs1704754    C    T    172.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.27;MQ0=0;QD=28.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463037    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:206,18,0
1    162760554    rs71519246    T    C    165.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.27;MQ0=0;QD=27.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463037    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:199,18,0
1    162765475    rs2684884    G    C    1244.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.96;MQ0=18;QD=15.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367915    GT:AD:DP:GQ:PL    1/1:0,82:82:99:1277,111,0
1    162766476    rs1780019    C    T    2509    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=59.46;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367915    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2542,196,0
1    162773514    rs10917598    G    C    78.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.1;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463037    GT:AD:DP:GQ:PL    0/1:3,3:6:99:109,0,100
1    162774236    rs77482353    A    G    199.12    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=51.73;MQ0=0;MQRankSum=-2.074;QD=13.27;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463037    GT:AD:DP:GQ:PL    0/1:7,8:15:99:229,0,208
1    162775267    rs12563263    C    T    473.54    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.616;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=44.73;MQ0=2;MQRankSum=0.213;QD=10.29;ReadPosRankSum=0.024;SNPEFF_AMINO_ACID_CHANGE=Y114;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_162775184_162775282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413934    GT:AD:DP:GQ:PL    0/1:27,19:46:99:504,0,622
1    162822771    rs2684878    A    C    1125.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=38.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367910    GT:AD:DP:GQ:PL    1/1:0,29:29:84.28:1158,84,0
1    163122528    rs1354939    G    C    1480    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.566;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9963;MQ=60.0;MQ0=0;MQRankSum=1.316;QD=16.63;ReadPosRankSum=-0.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313961    GT:AD:DP:GQ:PL    0/1:42,47:89:99:1510,0,1487
1    163137907    rs16850057    T    A    218.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=10.93;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313961    GT:AD:DP:GQ:PL    0/1:12,8:20:99:249,0,346
1    163142537    rs10917691    G    A    287.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313961    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
1    163142555    rs12035879    G    A    175.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313961    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
1    163187232    rs56177331    T    C    161.28    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.15;QD=10.75;ReadPosRankSum=-2.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367903    GT:AD:DP:GQ:PL    0/1:7,8:15:99:191,0,257
1    163187263    rs2814368    G    A    361.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.46;DB;DP=22;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.985;QD=16.43;ReadPosRankSum=2.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367903    GT:AD:DP:GQ:PL    0/1:11,11:22:99:391,0,315
1    163295678    rs6660538    A    C    220.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=15.73;ReadPosRankSum=-2.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271452    GT:AD:DP:GQ:PL    0/1:7,7:14:99:250,0,231
1    163297896    rs41272017    G    A    93.37    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=8.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271452    GT:AD:DP:GQ:PL    0/1:7,4:11:99:123,0,249
1    163307944    rs2175015    T    C    421.54    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.575;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=16.86;ReadPosRankSum=-0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450453    GT:AD:DP:GQ:PL    0/1:11,14:25:99:452,0,362
1    163309219    rs1509022    A    T    298.50    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.121;DB;DP=33;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.409;QD=9.05;ReadPosRankSum=-0.915;SNPEFF_AMINO_ACID_CHANGE=G186;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_163309171_163309267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271452    GT:AD:DP:GQ:PL    0/1:21,12:33:99:328,0,622
1    163309302    rs2999852    C    T    377.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442820    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:411,30,0
1    163310020    rs78023909    G    A    131.63    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=9.4;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442820    GT:AD:DP:GQ:PL    0/1:9,5:14:99:162,0,325
1    163315350    rs10753611    G    C    66.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.29;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527120    GT:AD:DP:GQ:PL    0/1:5,3:8:96.30:96,0,130
1    163317427    rs2292271    T    C    88.02    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=6.77;ReadPosRankSum=0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497990    GT:AD:DP:GQ:PL    0/1:9,4:13:99:118,0,284
1    163318934    rs17358956    A    C    494.57    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.848;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.95;MQ0=0;MQRankSum=-0.922;QD=22.48;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497990    GT:AD:DP:GQ:PL    0/1:6,16:22:99:525,0,180
1    163324929    rs34412706    C    CT    234.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=5;HaplotypeScore=12.6951;IndelType=I;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271452    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
1    164326453    rs10917988    G    C    633.33    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DB;DP=36;Dels=0.0;FS=10.48;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=17.59;ReadPosRankSum=0.507;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HMGB3P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444896    GT:AD:DP:GQ:PL    0/1:17,19:36:99:663,0,538
1    164610486    rs2039871    A    T    846.02    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.986;DB;DP=62;Dels=0.0;FS=7.64;HRun=0;HaplotypeScore=0.9997;MQ=59.33;MQ0=0;MQRankSum=-0.498;QD=13.65;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PBX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340699    GT:AD:DP:GQ:PL    0/1:33,29:62:99:876,0,1033
1    164789444    rs1538488    A    G    1545.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=58.95;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PBX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367897    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1579,117,0
1    164953077    rs17398855    C    T    204.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL390119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390797    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
1    164953332    rs17394768    C    T    1299    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL390119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390797    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1332,102,0
1    164953477    rs17394775    T    C    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL390119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390797    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
1    165173216    rs1354509    A    G    2086.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=D350;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_165171110_165173277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMX1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294816    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2120,156,0
1    165174791    rs12128508    C    A    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMX1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    165175374    rs4656435    G    A    180.24    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.717;QD=16.39;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMX1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294816    GT:AD:DP:GQ:PL    0/1:5,6:11:99:210,0,165
1    165177170    rs17403138    T    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMX1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294816    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:72,0,34
1    165180089    rs1532815    T    A    420.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMX1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294816    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
1    165218679    rs9970062    C    T    532.65    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.719;DB;DP=40;Dels=0.0;FS=2.974;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.662;QD=13.32;ReadPosRankSum=-0.239;SNPEFF_AMINO_ACID_CHANGE=L154;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_165218645_165218877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMX1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294816    GT:AD:DP:GQ:PL    0/1:19,21:40:99:563,0,550
1    165370757    rs283690    G    A    123.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359842    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
1    165375895    rs283697    A    C    111.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470566    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:144,12,0
1    165376043    rs283696    T    C    1428.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.98;MQ0=0;QD=32.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470566    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1461,111,0
1    165377389    rs283692    T    C    851.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470566    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:885,66,0
1    165380027    rs185905    C    T    486.10    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.339;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.628;QD=16.2;ReadPosRankSum=0.167;SNPEFF_AMINO_ACID_CHANGE=K275;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_165379939_165380068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359842    GT:AD:DP:GQ:PL    0/1:13,17:30:99:516,0,434
1    165386650    rs190800    G    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359842    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    165388948    rs157869    G    A    469.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359842    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:503,36,0
1    165389285    rs157870    C    G    956.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8899;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359842    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:989,75,0
1    165398115    rs113471    T    C    290.78    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.882;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.041;QD=10.03;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=T46;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_165397956_165398203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359842    GT:AD:DP:GQ:PL    0/1:17,12:29:99:321,0,549
1    165513439    rs285446    A    C    565.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.32;MQ0=0;QD=33.26;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_165513244_165514155;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294818    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:598,48,0
1    165513456    rs285445    A    T    862    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.53;MQ0=0;QD=29.72;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_165513244_165514155;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294818    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:895,72,0
1    165513463    rs285444    C    G    665.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.06;MQ0=0;QD=21.47;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_165513244_165514155;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294818    GT:AD:DP:GQ:PL    1/1:0,31:31:63.13:699,63,0
1    165513471    .    G    A    399.02    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DP=37;Dels=0.0;FS=1.817;HRun=1;HaplotypeScore=0.0;MQ=52.72;MQ0=0;MQRankSum=-2.282;QD=10.78;ReadPosRankSum=-2.028;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_165513244_165514155;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294818    GT:AD:DP:GQ:PL    0/1:18,19:37:99:429,0,465
1    165601365    rs4147596    T    C    311.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367884    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:345,27,0
1    165601466    rs9333378    G    A    928.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000367883    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:961,72,0
1    165601538    .    T    TC    419.58    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.35;DP=22;FS=1.922;HRun=2;HaplotypeScore=95.0903;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.504;QD=19.07;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367883    GT:AD:DP:GQ:PL    0/1:10,12:22:99:459,0,237
1    165619424    rs9333468    G    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461759    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    165621322    rs77176546    TATTATC    T    956.28    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=4.556;DB;DP=38;FS=2.01;HRun=0;HaplotypeScore=229.5931;IndelType=D;MQ=49.17;MQ0=0;MQRankSum=-4.364;QD=25.17;ReadPosRankSum=0.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461308    GT:AD:DP:GQ:PL    0/1:23,15:38:99:995,0,2202
1    165623355    rs4147603    C    T    144.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=14.43;ReadPosRankSum=1.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461308    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,174
1    165623386    rs4147604    C    G    206.82    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.405;QD=13.79;ReadPosRankSum=1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461308    GT:AD:DP:GQ:PL    0/1:8,7:15:99:237,0,294
1    165623411    rs4147605    C    G    299.19    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.654;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.503;QD=10.69;ReadPosRankSum=0.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461308    GT:AD:DP:GQ:PL    0/1:18,10:28:99:329,0,673
1    165623451    rs4147606    C    T    549.76    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.767;DB;DP=49;Dels=0.0;FS=2.496;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.889;QD=11.22;ReadPosRankSum=-0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461308    GT:AD:DP:GQ:PL    0/1:29,20:49:99:580,0,993
1    165623693    rs4147607    G    C    285.70    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.262;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.078;QD=9.52;ReadPosRankSum=1.078;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461308    GT:AD:DP:GQ:PL    0/1:19,11:30:99:316,0,707
1    165624799    rs8133    G    T    219.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.173;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.746;QD=10.47;ReadPosRankSum=1.812;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461308    GT:AD:DP:GQ:PL    0/1:12,9:21:99:250,0,360
1    165630475    rs7544840    C    T    288.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354775    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
1    165630495    rs7511691    T    C    406.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354775    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:440,33,0
1    165630698    rs6667681    A    G    1332.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=T119A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_165630666_165631033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367888    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1366,102,0
1    165634425    rs3820362    C    G    164.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=13.74;ReadPosRankSum=-2.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491436    GT:AD:DP:GQ:PL    0/1:6,6:12:99:195,0,213
1    165636749    rs2176151    A    G    136.73    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.995;MQ=58.2;MQ0=0;MQRankSum=0.244;QD=10.52;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491436    GT:AD:DP:GQ:PL    0/1:7,6:13:99:167,0,210
1    165648559    rs4646897    T    G    74.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=10.66;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461664    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,129
1    165648886    rs4646896    G    A    642.36    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.698;DB;DP=39;Dels=0.0;FS=4.27;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.814;QD=16.47;ReadPosRankSum=1.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461664    GT:AD:DP:GQ:PL    0/1:16,23:39:99:672,0,527
1    165648894    rs4646895    C    G    648.50    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.512;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.162;QD=18.01;ReadPosRankSum=2.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461664    GT:AD:DP:GQ:PL    0/1:16,20:36:99:678,0,521
1    165649467    rs139558109    GAC    G    154.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=24.9333;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=-0.922;QD=22.12;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461664    GT:AD:DP:GQ:PL    0/1:2,5:7:89.03:194,0,89
1    165651153    rs2882006    T    A    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471457    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
1    165651502    rs1913844    G    C    1119.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471457    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1153,84,0
1    165652273    rs1143659    A    G    1333.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=29.0;SNPEFF_AMINO_ACID_CHANGE=I134;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_165652218_165652347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354775    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1367,108,0
1    165652445    rs4233407    A    G    907.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354775    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:940,75,0
1    165664746    .    TTC    T    147.62    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=51.2769;IndelType=D;MQ=37.52;MQ0=0;QD=24.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354775    GT:AD:DP:GQ:PL    1/1:1,5:6:18.04:190,18,0
1    165667512    rs4646883    T    C    185.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=18.57;ReadPosRankSum=-1.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354775    GT:AD:DP:GQ:PL    0/1:4,6:10:99:216,0,136
1    165667548    rs4646882    G    C    243.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=20.27;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354775    GT:AD:DP:GQ:PL    0/1:4,8:12:99:273,0,124
1    165670958    rs1547725    T    C    1153.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354775    GT:AD:DP:GQ:PL    1/1:0,31:31:87.27:1186,87,0
1    165677673    rs12027066    C    T    223.94    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=11;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.7887;MQ=57.87;MQ0=0;MQRankSum=-0.48;QD=20.36;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-466F5.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400982    GT:AD:DP:GQ:PL    0/1:2,8:11:51.94:254,0,52
1    165677731    rs12044709    A    C    270.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.649;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.883;QD=15.02;ReadPosRankSum=1.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-466F5.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400982    GT:AD:DP:GQ:PL    0/1:9,9:18:99:300,0,306
1    165678072    rs7537774    G    A    81.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.44;ReadPosRankSum=-0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-466F5.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400982    GT:AD:DP:GQ:PL    0/1:1,3:4:19.51:112,0,20
1    165678099    rs7549418    T    C    66.29    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.57;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-466F5.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400982    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:96,0,25
1    165712555    rs71826578    GA    G    155.99    PASS    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.554;DB;DP=66;FS=7.04;HRun=15;HaplotypeScore=359.9861;IndelType=D;MQ=56.36;MQ0=0;MQRankSum=0.554;QD=2.33;ReadPosRankSum=1.685;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367881    GT:AD:DP:GQ:PL    0/1:51,12:66:99:195,0,476
1    165721223    rs7512095    T    C    70.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367881    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:101,0,68
1    165737704    rs2790053    C    G    130.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367881    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:163,15,0
1    165859630    rs477033    C    G    785.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367879    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:818,60,0
1    165865300    rs4656465    G    A    1234.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367879    GT:AD:DP:GQ:PL    1/1:0,31:31:93.29:1267,93,0
1    165865478    rs11553301    G    A    1497.30    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.484;DB;DP=130;Dels=0.0;FS=0.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.364;QD=11.52;ReadPosRankSum=0.355;SNPEFF_AMINO_ACID_CHANGE=G136;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_165865427_165865569;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367879    GT:AD:DP:GQ:PL    0/1:75,55:130:99:1527,0,2243
1    166027887    rs4589088    A    G    68.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM78B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456900    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
1    166028117    rs10800178    C    T    575.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM78B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456900    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:608,45,0
1    166246419    rs2488896    A    G    909.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-7G12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400979    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:942,72,0
1    166591043    rs530513    T    C    440.99    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.018;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=10.76;ReadPosRankSum=0.414;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMO9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477875    GT:AD:DP:GQ:PL    0/1:25,16:41:99:471,0,863
1    166816108    rs56229522    T    A    103.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=10.31;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367875    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,218
1    166818566    rs2075946    A    G    559.25    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=46;Dels=0.0;FS=2.886;HRun=0;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=0.567;QD=12.16;ReadPosRankSum=0.995;SNPEFF_AMINO_ACID_CHANGE=A132;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_166818175_166819660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537173    GT:AD:DP:GQ:PL    0/1:22,24:46:99:589,0,622
1    166826655    rs6675033    C    T    277.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.925;QD=23.16;ReadPosRankSum=-1.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367875    GT:AD:DP:GQ:PL    0/1:3,9:12:81.32:308,0,81
1    166826773    rs6675153    C    T    596.97    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=46;Dels=0.0;FS=2.693;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.759;QD=12.98;ReadPosRankSum=0.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367875    GT:AD:DP:GQ:PL    0/1:24,22:46:99:627,0,773
1    166827224    rs6675750    G    A    553.22    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=4.845;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.414;QD=16.76;ReadPosRankSum=-1.063;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367875    GT:AD:DP:GQ:PL    0/1:16,17:33:99:583,0,436
1    166827602    rs10800270    A    T    121.08    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.482;QD=7.57;ReadPosRankSum=-0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367875    GT:AD:DP:GQ:PL    0/1:9,7:16:99:151,0,331
1    166827674    rs6691431    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367875    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
1    166829320    rs75972845    C    CT    264.70    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=15;FS=3.68;HRun=2;HaplotypeScore=27.5145;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=1.222;QD=17.65;ReadPosRankSum=-1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367876    GT:AD:DP:GQ:PL    0/1:6,9:15:99:304,0,181
1    166831404    rs2075947    A    C    589.81    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=47;Dels=0.0;FS=2.095;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=12.55;ReadPosRankSum=-0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TADA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367874    GT:AD:DP:GQ:PL    0/1:26,21:47:99:620,0,865
1    166832841    rs12032642    G    C    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TADA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367874    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    166833199    rs2272793    C    A    474.52    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.457;DB;DP=45;Dels=0.0;FS=1.62;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.316;QD=10.54;ReadPosRankSum=-1.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TADA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367874    GT:AD:DP:GQ:PL    0/1:28,17:45:99:505,0,885
1    166838866    rs71253526    A    AATTTT    678    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=25;FS=18.468;HRun=0;HaplotypeScore=114.2156;IndelType=I;MQ=57.57;MQ0=0;MQRankSum=-0.598;QD=27.12;ReadPosRankSum=-1.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TADA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367874    GT:AD:DP:GQ:PL    0/1:17,7:25:99:717,0,867
1    166839174    rs4657609    G    A    132.44    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=10.19;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TADA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367874    GT:AD:DP:GQ:PL    0/1:7,6:13:99:162,0,255
1    166958601    rs2296837    T    C    40.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.19;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=R4;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_166958498_166958721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367870    GT:AD:DP:GQ:PL    0/1:3,2:5:61.38:71,0,61
1    166958607    rs113297248    C    G    39.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.62;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=A6;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_166958498_166958721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367870    GT:AD:DP:GQ:PL    0/1:3,3:6:69.71:70,0,71
1    166958937    rs41269702    G    T    353.75    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.501;DB;DP=28;Dels=0.0;FS=1.946;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.645;QD=12.63;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367870    GT:AD:DP:GQ:PL    0/1:15,13:28:99:384,0,454
1    166961857    rs7511933    G    A    148.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.306;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.972;QD=5.51;ReadPosRankSum=-0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367870    GT:AD:DP:GQ:PL    0/1:18,9:27:99:179,0,661
1    166963234    rs3736988    T    C    168.18    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.309;QD=14.02;ReadPosRankSum=-1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367870    GT:AD:DP:GQ:PL    0/1:5,7:12:99:198,0,174
1    166974420    rs1041238    T    C    255.87    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=26;Dels=0.0;FS=1.617;HRun=0;HaplotypeScore=1.5253;MQ=59.11;MQ0=0;MQRankSum=-0.026;QD=9.84;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367870    GT:AD:DP:GQ:PL    0/1:16,10:26:99:286,0,516
1    166990153    .    A    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447624    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
1    167023426    rs3820388    C    T    130.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=13.03;ReadPosRankSum=0.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPA33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527955    GT:AD:DP:GQ:PL    0/1:5,5:10:99:160,0,181
1    167024078    .    T    G    32.85    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=8.8478;MQ=47.12;MQ0=0;MQRankSum=-1.38;QD=3.29;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPA33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367868    GT:AD:DP:GQ:PL    0/1:2,8:10:56.24:63,0,56
1    167024100    .    T    A    37.52    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.9677;MQ=50.39;MQ0=0;MQRankSum=-2.262;QD=2.89;ReadPosRankSum=1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPA33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367868    GT:AD:DP:GQ:PL    0/1:9,4:13:67.51:68,0,198
1    167059336    rs2281964    C    T    302    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPA33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367868    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:335,24,0
1    167059462    rs2281963    G    C    1142    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPA33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367868    GT:AD:DP:GQ:PL    1/1:0,36:36:87.25:1175,87,0
1    167059575    rs28384507    G    T    537.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_167059482_167059868;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPA33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367868    GT:AD:DP:GQ:PL    1/1:0,18:18:45.10:571,45,0
1    167082869    rs12122365    G    A    1145.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271385    GT:AD:DP:GQ:PL    1/1:0,34:34:93.29:1179,93,0
1    167095163    rs267745    G    C    352.97    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.949;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.83;MQ0=0;MQRankSum=0.292;QD=9.05;ReadPosRankSum=-0.613;SNPEFF_AMINO_ACID_CHANGE=E265D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_167095024_167097845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271385    GT:AD:DP:GQ:PL    0/1:20,19:39:99:383,0,511
1    167097070    rs61748781    G    A    406.39    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.701;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.257;QD=9.68;ReadPosRankSum=-1.601;SNPEFF_AMINO_ACID_CHANGE=R901H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_167095024_167097845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271385    GT:AD:DP:GQ:PL    0/1:25,17:42:99:436,0,661
1    167097567    rs61748784    G    A    450.31    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=23;Dels=0.0;FS=4.304;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.678;QD=19.58;ReadPosRankSum=1.388;SNPEFF_AMINO_ACID_CHANGE=D1067N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_167095024_167097845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271385    GT:AD:DP:GQ:PL    0/1:8,15:23:99:480,0,260
1    167097739    rs2281959    C    A    171.98    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.519;DB;DP=31;Dels=0.0;FS=3.851;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.7;QD=5.55;ReadPosRankSum=-0.068;SNPEFF_AMINO_ACID_CHANGE=T1124N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_167095024_167097845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271385    GT:AD:DP:GQ:PL    0/1:23,8:31:99:202,0,742
1    167353258    rs35617253    AT    A    295.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=10;HaplotypeScore=45.7003;IndelType=D;MQ=61.26;MQ0=0;QD=17.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492850    GT:AD:DP:GQ:PL    1/1:4,13:17:38.98:337,39,0
1    167367193    rs7524019    C    T    1431.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=36.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452019    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1465,108,0
1    167382374    rs10753757    A    C    1561.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.99;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367862    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1594,123,0
1    167382399    rs72086535    AGTGT    A    748.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=255.8628;IndelType=D;MQ=53.47;MQ0=0;MQRankSum=1.187;QD=22.67;ReadPosRankSum=0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367862    GT:AD:DP:GQ:PL    1/1:15,17:33:53.46:790,53,0
1    167385178    rs71850487    G    GA    352.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.883;DB;DP=40;FS=0.0;HRun=15;HaplotypeScore=351.7223;IndelType=I;MQ=49.83;MQ0=0;MQRankSum=-0.08;QD=8.82;ReadPosRankSum=-0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429375    GT:AD:DP:GQ:PL    1/1:18,15:40:20.29:395,20,0
1    167385324    rs34032944    TA    T    67.90    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.391;DB;DP=28;FS=4.803;HRun=19;HaplotypeScore=190.7903;IndelType=D;MQ=46.7;MQ0=0;MQRankSum=-1.733;QD=2.43;ReadPosRankSum=-0.28;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_167385286_167385326;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000420254    GT:AD:DP:GQ:PL    0/1:17,7:28:15.18:107,0,15
1    167403504    rs952962    A    G    95.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD247;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362089    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
1    167404078    rs3108156    G    A    595.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD247;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362089    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:629,45,0
1    167404179    rs61806155    G    A    31.90    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.56;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD247;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479979    GT:AD:DP:GQ:PL    0/1:4,3:7:61.89:62,0,131
1    167404514    rs55696551    C    G    119.29    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.49;MQ0=0;MQRankSum=0.521;QD=4.77;ReadPosRankSum=-0.765;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD247;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479979    GT:AD:DP:GQ:PL    0/1:17,8:25:99:149,0,476
1    167407686    rs2462553    T    C    489.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD247;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479979    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:522,39,0
1    167407799    rs56199250    A    T    1131.25    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DB;DP=64;Dels=0.0;FS=6.266;HRun=0;HaplotypeScore=1.7675;MQ=59.28;MQ0=0;MQRankSum=-0.76;QD=17.68;ReadPosRankSum=-1.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD247;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479979    GT:AD:DP:GQ:PL    0/1:25,38:64:99:1161,0,705
1    167515272    rs7513428    T    C    148.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=14.8;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CREG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370509    GT:AD:DP:GQ:PL    0/1:5,5:10:99:178,0,133
1    167734717    rs3830183    A    G    134.62    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=16.83;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359523    GT:AD:DP:GQ:PL    0/1:3,5:8:96.19:165,0,96
1    167745157    rs4657711    A    G    106.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465787    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:139,12,0
1    167778843    rs3213588    G    A    270.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.604;QD=12.31;ReadPosRankSum=-0.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367848    GT:AD:DP:GQ:PL    0/1:12,10:22:99:301,0,418
1    167792050    rs34888342    C    T    211.57    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=17.63;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271426    GT:AD:DP:GQ:PL    0/1:5,7:12:99:242,0,171
1    167792079    rs2269673    G    T    369.40    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=2.276;QD=18.47;ReadPosRankSum=1.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271426    GT:AD:DP:GQ:PL    0/1:8,12:20:99:399,0,220
1    167802068    rs3738234    A    G    78.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=11.16;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271426    GT:AD:DP:GQ:PL    0/1:3,4:7:99:108,0,102
1    167806642    rs35986349    C    G    326.95    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.001;QD=19.23;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367848    GT:AD:DP:GQ:PL    0/1:7,10:17:99:357,0,235
1    167806647    rs1034463    T    A    266.49    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=16.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367848    GT:AD:DP:GQ:PL    0/1:7,9:16:99:296,0,239
1    167806696    rs1034464    T    C    42.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367848    GT:AD:DP:GQ:PL    0/1:2,2:4:70.42:73,0,70
1    167906239    rs203788    A    C    174.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.9;SNPEFF_AMINO_ACID_CHANGE=R30;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_167905946_167906246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:207,18,0
1    167972023    rs202248    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    168025400    rs3977721    G    C    561.98    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=61;Dels=0.0;FS=10.0;HRun=0;HaplotypeScore=0.5784;MQ=47.11;MQ0=2;MQRankSum=-1.933;QD=9.21;ReadPosRankSum=0.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    0/1:29,32:61:99:592,0,1029
1    168025409    rs3977722    A    G    655.79    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=61;Dels=0.0;FS=7.625;HRun=0;HaplotypeScore=1.5731;MQ=47.88;MQ0=2;MQRankSum=-1.879;QD=10.75;ReadPosRankSum=-0.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    0/1:27,34:61:99:686,0,955
1    168025442    rs6657295    A    G    293.85    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=80;Dels=0.0;FS=2.342;HRun=0;HaplotypeScore=0.0;MQ=53.72;MQ0=0;MQRankSum=2.964;QD=3.67;ReadPosRankSum=0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    0/1:63,17:80:99:324,0,2028
1    168025538    rs3977723    T    C    348.22    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.13;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=55.85;MQ0=0;MQRankSum=-0.111;QD=9.16;ReadPosRankSum=1.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    0/1:21,17:38:99:378,0,591
1    168025577    rs7535741    C    T    111.01    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=3.567;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6381;MQ=51.36;MQ0=0;MQRankSum=0.496;QD=3.58;ReadPosRankSum=-3.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    0/1:24,7:31:99:141,0,602
1    168025628    rs7535915    G    A    35.24    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.38;MQ0=0;MQRankSum=-0.555;QD=2.94;ReadPosRankSum=2.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    0/1:9,3:12:65.23:65,0,290
1    168025664    rs7535844    C    A    107.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.47;MQ0=0;QD=26.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312263    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
1    168035104    rs380095    G    C    200.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478668    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:233,18,0
1    168200733    rs11588504    T    C    781.40    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9662;MQ=60.0;MQ0=0;MQRankSum=-1.385;QD=16.99;ReadPosRankSum=-1.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFT2D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271375    GT:AD:DP:GQ:PL    0/1:14,32:46:99:811,0,319
1    168206118    rs3830719    GTTTAA    G    555.01    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=4.476;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=170.7459;IndelType=D;MQ=58.07;MQ0=0;MQRankSum=-0.646;QD=16.32;ReadPosRankSum=0.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFT2D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471981    GT:AD:DP:GQ:PL    0/1:23,11:34:99:594,0,1664
1    168208308    rs12142742    T    C    1466.80    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.538;DB;DP=98;Dels=0.0;FS=0.939;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.582;QD=14.97;ReadPosRankSum=0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFT2D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471981    GT:AD:DP:GQ:PL    0/1:51,47:98:99:1497,0,1516
1    168262289    rs7543224    A    G    632.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367821    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:665,48,0
1    168262299    rs7520743    C    T    743.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367821    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:776,57,0
1    168274201    rs4656579    G    A    594.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.073;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7886;MQ=58.89;MQ0=0;MQRankSum=0.413;QD=28.32;ReadPosRankSum=0.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367821    GT:AD:DP:GQ:PL    1/1:1,20:21:11.94:627,12,0
1    168278264    rs1883148    G    A    110.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367821    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:143,12,0
1    168282261    rs3885717    T    A    169.75    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=9.99;ReadPosRankSum=1.357;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465440    GT:AD:DP:GQ:PL    0/1:11,6:17:99:200,0,324
1    168344829    rs78825966    C    T    1792.15    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=5.859;DB;DP=119;Dels=0.0;FS=3.708;HRun=0;HaplotypeScore=5.2302;MQ=59.65;MQ0=0;MQRankSum=0.856;QD=15.06;ReadPosRankSum=1.599;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR557;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385239    GT:AD:DP:GQ:PL    0/1:61,58:119:99:1822,0,1507
1    168510122    rs470733    T    A    104.12    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=48.56;MQ0=1;MQRankSum=-2.174;QD=5.48;ReadPosRankSum=0.725;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367819    GT:AD:DP:GQ:PL    0/1:11,8:19:99:134,0,331
1    168511155    rs76400946    T    C    458.37    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.478;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=54.86;MQ0=4;MQRankSum=-0.683;QD=7.16;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367819    GT:AD:DP:GQ:PL    0/1:41,23:64:99:488,0,1386
1    168511284    rs4282797    T    C    290.66    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.857;DB;DP=100;Dels=0.0;FS=7.395;HRun=1;HaplotypeScore=1.7262;MQ=54.14;MQ0=8;MQRankSum=-5.106;QD=2.91;ReadPosRankSum=-3.771;SNPEFF_AMINO_ACID_CHANGE=P41;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_168511231_168511345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367819    GT:AD:DP:GQ:PL    0/1:73,26:100:99:321,0,2462
1    168511349    rs4478789    A    G    149.52    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=2.379;DB;DP=70;Dels=0.01;FS=11.265;HRun=1;HaplotypeScore=4.8394;MQ=54.42;MQ0=5;MQRankSum=-3.263;QD=2.11;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367819    GT:AD:DP:GQ:PL    0/1:55,15:70:99:180,0,1659
1    168513129    rs3820405    C    T    364.55    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.75;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=54.11;MQ0=0;MQRankSum=-0.75;QD=10.13;ReadPosRankSum=-1.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367819    GT:AD:DP:GQ:PL    0/1:20,16:36:99:395,0,601
1    168513243    rs1933114    G    A    87.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=4.89;ReadPosRankSum=-0.234;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367819    GT:AD:DP:GQ:PL    0/1:12,6:18:99:118,0,413
1    168546029    .    C    A    101.22    SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=47.38;MQ0=0;MQRankSum=-2.843;QD=8.43;ReadPosRankSum=2.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367818    GT:AD:DP:GQ:PL    0/1:6,6:12:99:131,0,206
1    168546035    rs148646388    T    G    118.84    SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=46.06;MQ0=0;MQRankSum=-2.45;QD=10.8;ReadPosRankSum=2.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367818    GT:AD:DP:GQ:PL    0/1:5,5:11:99:149,0,175
1    168546038    rs480717    C    T    120.92    SnpCluster    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=44.43;MQ0=0;MQRankSum=-2.383;QD=12.09;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367818    GT:AD:DP:GQ:PL    0/1:4,6:10:99:151,0,129
1    168549254    rs5024578    A    G    92.38    QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=0.218;DB;DP=80;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.81;MQ0=3;MQRankSum=-2.97;QD=1.15;ReadPosRankSum=-0.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367818    GT:AD:DP:GQ:PL    0/1:65,15:80:99:122,0,2116
1    168549422    rs6427130    C    T    1477.45    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=139;Dels=0.0;FS=0.703;HRun=1;HaplotypeScore=0.0;MQ=57.26;MQ0=4;MQRankSum=2.176;QD=10.63;ReadPosRankSum=-1.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367818    GT:AD:DP:GQ:PL    0/1:82,57:139:99:1507,0,2285
1    168550535    rs79981832    A    G    397.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.295;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=53.47;MQ0=2;MQRankSum=2.295;QD=19.87;ReadPosRankSum=1.264;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367818    GT:AD:DP:GQ:PL    0/1:8,12:20:99:427,0,131
1    168665747    rs78760104    C    CT    545.46    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.64;DB;DP=29;FS=6.495;HRun=0;HaplotypeScore=78.4661;IndelType=I;MQ=59.95;MQ0=0;MQRankSum=0.633;QD=18.81;ReadPosRankSum=-0.109;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367817    GT:AD:DP:GQ:PL    0/1:15,14:29:99:584,0,524
1    168665974    rs524705    T    C    34.19    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.88;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367817    GT:AD:DP:GQ:PL    0/1:5,2:7:64.18:64,0,136
1    168697942    rs628718    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367817    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
1    169076212    rs1200128    G    C    114.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367815    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:147,12,0
1    169080435    rs1200137    T    C    281.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367813    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
1    169080837    rs1200138    C    T    663.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367813    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:696,54,0
1    169094100    rs968304    T    A    1434.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.41;MQ0=0;QD=32.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367813    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1467,111,0
1    169094459    rs1892094    C    T    87.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=9.75;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367813    GT:AD:DP:GQ:PL    0/1:3,6:9:99:118,0,100
1    169099061    rs1200157    G    A    133.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494797    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    169101935    rs1138486    C    T    291.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.002;QD=19.43;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367813    GT:AD:DP:GQ:PL    0/1:6,9:15:99:321,0,204
1    169102223    rs61803315    G    C    81.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.24;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367813    GT:AD:DP:GQ:PL    0/1:2,3:5:63.39:111,0,63
1    169138307    rs4656656    C    A    875.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483228    GT:AD:DP:GQ:PL    1/1:0,30:30:69.22:909,69,0
1    169138318    rs4656657    T    A    804.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483228    GT:AD:DP:GQ:PL    1/1:0,28:28:66.21:837,66,0
1    169138868    rs3737681    C    T    1924.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=38.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1958,144,0
1    169200111    rs10800420    C    T    708.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:741,57,0
1    169206744    rs34246691    T    C    215.51    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=16;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.355;QD=13.47;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    0/1:7,9:16:99:246,0,197
1    169206994    rs35686505    A    AT    295.62    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.8;DB;DP=26;FS=0.0;HRun=6;HaplotypeScore=62.0;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=-0.215;QD=11.37;ReadPosRankSum=-0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    0/1:15,11:26:99:335,0,296
1    169256341    rs71635617    C    T    104.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.06;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469474    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,145
1    169256349    rs2420015    C    G    333.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469474    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:367,27,0
1    169256356    rs5778611    G    GA    443.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=4;HaplotypeScore=74.837;IndelType=I;MQ=60.9;MQ0=0;QD=36.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469474    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:486,36,0
1    169256501    rs4589164    C    T    2764.06    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=3.599;DB;DP=193;Dels=0.0;FS=2.367;HRun=1;HaplotypeScore=2.8228;MQ=59.66;MQ0=0;MQRankSum=-1.252;QD=14.32;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    0/1:92,101:193:99:2794,0,2803
1    169268077    rs12116683    T    C    138.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=11.57;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527460    GT:AD:DP:GQ:PL    0/1:6,6:12:99:169,0,211
1    169272299    rs10919130    A    T    213.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=13.32;ReadPosRankSum=0.984;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527460    GT:AD:DP:GQ:PL    0/1:8,8:16:99:243,0,293
1    169272451    rs10800427    A    T    418.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    1/1:0,17:17:45.07:451,45,0
1    169272453    rs10800428    G    A    421.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    1/1:0,17:17:45.08:454,45,0
1    169279196    rs34054662    T    TA    1116.94    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.612;DB;DP=71;FS=7.948;HRun=7;HaplotypeScore=143.1953;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.538;QD=15.73;ReadPosRankSum=0.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    0/1:34,37:71:99:1156,0,639
1    169293721    rs7538259    G    A    690.63    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=0.725;DB;DP=33;Dels=0.0;FS=1.67;HRun=2;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=1.195;QD=20.93;ReadPosRankSum=0.176;SNPEFF_AMINO_ACID_CHANGE=F7;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169293631_169293738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NME7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367811    GT:AD:DP:GQ:PL    0/1:10,23:33:99:721,0,276
1    169345704    rs12563090    G    A    134.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=14.95;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329281    GT:AD:DP:GQ:PL    0/1:3,6:9:99:165,0,100
1    169345868    rs1028180    A    G    555.89    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=53;Dels=0.0;FS=8.103;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.668;QD=10.49;ReadPosRankSum=-0.668;SNPEFF_AMINO_ACID_CHANGE=Q40R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169345778_169346217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLZF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329281    GT:AD:DP:GQ:PL    0/1:27,26:53:99:586,0,849
1    169347545    rs2271762    G    A    817.67    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=47;Dels=0.0;FS=1.471;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.61;QD=17.4;ReadPosRankSum=0.931;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367807    GT:AD:DP:GQ:PL    0/1:21,26:47:99:848,0,640
1    169349608    rs3830533    C    CTA    815.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=33.1675;IndelType=I;MQ=56.76;MQ0=0;QD=54.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367807    GT:AD:DP:GQ:PL    1/1:2,13:15:45.15:857,45,0
1    169351596    rs3905328    A    G    405.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367807    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:438,33,0
1    169366516    rs2272801    G    A    312.68    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.249;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.38;MQ0=0;MQRankSum=0.572;QD=10.42;ReadPosRankSum=1.037;SNPEFF_AMINO_ACID_CHANGE=F442;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169366475_169366626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf114;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367805    GT:AD:DP:GQ:PL    0/1:18,12:30:99:343,0,577
1    169388193    rs3765229    T    C    1014.26    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.342;DB;DP=62;Dels=0.0;FS=9.415;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=-0.339;QD=16.36;ReadPosRankSum=0.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456107    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1044,0,999
1    169390957    rs35107735    A    T    1204.34    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.554;DB;DP=100;Dels=0.0;FS=8.162;HRun=0;HaplotypeScore=3.866;MQ=59.31;MQ0=0;MQRankSum=-1.719;QD=12.04;ReadPosRankSum=-1.549;SNPEFF_AMINO_ACID_CHANGE=F238I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169390601_169391551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf114;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367805    GT:AD:DP:GQ:PL    0/1:51,49:100:99:1234,0,1485
1    169391154    rs3820059    A    G    1838.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=F172S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169390601_169391551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf114;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367805    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1872,147,0
1    169393888    rs16862153    C    T    141.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.89;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367805    GT:AD:DP:GQ:PL    0/1:6,5:11:99:172,0,212
1    169394226    rs10919168    A    G    920.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367805    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:953,69,0
1    169435027    rs2678166    C    T    1754    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9766;MQ=59.14;MQ0=0;QD=32.48;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC19A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236137    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1787,132,0
1    169446183    rs1983546    A    G    53.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=5.98;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC19A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236137    GT:AD:DP:GQ:PL    0/1:6,3:9:83.82:84,0,214
1    169493953    rs12131397    A    C    333.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367796    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:367,27,0
1    169498834    rs6009    T    C    1085.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367796    GT:AD:DP:GQ:PL    1/1:0,31:31:84.26:1118,84,0
1    169510233    rs9332607    G    A    4014.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.898;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1062;MQ=59.56;MQ0=0;MQRankSum=1.953;QD=29.52;ReadPosRankSum=0.952;SNPEFF_AMINO_ACID_CHANGE=T1365;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169509532_169512352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367797    GT:AD:DP:GQ:PL    1/1:7,129:136:99:4014,213,0
1    169519049    rs6025    T    C    839.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_AMINO_ACID_CHANGE=Q534R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169519039_169519253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367796    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:872,63,0
1    169519417    rs7537742    G    A    90.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.32;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367796    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    169528384    rs6023    G    A    468.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.375;DB;DP=45;Dels=0.0;FS=2.893;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=0.591;QD=10.4;ReadPosRankSum=1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367796    GT:AD:DP:GQ:PL    0/1:27,18:45:99:498,0,829
1    169559326    rs3917853    G    A    538.31    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=1.024;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7995;MQ=60.0;MQ0=0;MQRankSum=0.108;QD=20.7;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    0/1:9,17:26:99:568,0,280
1    169559333    rs3917852    AT    A    489.53    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=3.38;DB;DP=29;FS=0.0;HRun=5;HaplotypeScore=152.2877;IndelType=D;MQ=60.74;MQ0=0;MQRankSum=0.408;QD=16.88;ReadPosRankSum=-0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    0/1:10,19:29:99:529,0,317
1    169560471    rs3917840    A    G    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
1    169560485    rs3917839    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    169560727    rs35706397    T    TAA    699.24    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=0.033;DB;DP=30;FS=3.178;HRun=12;HaplotypeScore=123.4961;IndelType=I;MQ=57.92;MQ0=0;MQRankSum=-1.215;QD=23.31;ReadPosRankSum=-2.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    0/1:7,16:30:28.88:738,0,29
1    169563062    rs17522707    G    A    364.13    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=19;Dels=0.0;FS=4.102;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.95;QD=19.16;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    0/1:8,11:19:99:394,0,226
1    169564130    rs1569471    T    G    252.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=12.65;ReadPosRankSum=-0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    0/1:10,10:20:99:283,0,312
1    169566313    rs6127    C    T    718.32    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.419;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.16;QD=13.06;ReadPosRankSum=-1.93;SNPEFF_AMINO_ACID_CHANGE=D526N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169566229_169566414;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458599    GT:AD:DP:GQ:PL    0/1:29,26:55:99:748,0,986
1    169566373    rs143011778    G    A    452.76    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.224;DB;DP=34;Dels=0.0;FS=12.817;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.983;QD=13.32;ReadPosRankSum=-0.845;SNPEFF_AMINO_ACID_CHANGE=L506;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169566229_169566414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458599    GT:AD:DP:GQ:PL    0/1:18,16:34:99:483,0,645
1    169580510    rs3917733    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    169580717    rs3917731    T    C    1440.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1473,111,0
1    169580972    rs3917730    C    CAT    2330.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=97.1947;IndelType=I;MQ=61.67;MQ0=0;QD=52.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    1/1:0,44:44:99:2372,132,0
1    169599254    rs732314    T    C    1473.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263686    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1507,114,0
1    169660781    rs12938    A    G    237.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497295    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:271,24,0
1    169665551    rs4987358    G    T    351    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236147    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:384,30,0
1    169665632    rs2223286    T    C    901.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236147    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:935,69,0
1    169672595    .    GA    G    105.66    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DP=30;FS=7.104;HRun=14;HaplotypeScore=198.1709;IndelType=D;MQ=56.85;MQ0=0;MQRankSum=1.333;QD=3.52;ReadPosRankSum=2.086;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466340    GT:AD:DP:GQ:PL    0/1:20,8:30:99:145,0,189
1    169676293    rs2205848    G    A    345.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236147    GT:AD:DP:GQ:PL    1/1:0,10:10:30.05:379,30,0
1    169676486    rs1131498    A    G    2967.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7323;MQ=59.51;MQ0=0;MQRankSum=1.337;QD=31.57;ReadPosRankSum=-0.887;SNPEFF_AMINO_ACID_CHANGE=F206L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169676483_169676590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000236147    GT:AD:DP:GQ:PL    1/1:2,91:94:99:3001,189,0
1    169679553    rs4987280    C    T    1413.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.57;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236147    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1446,111,0
1    169694695    rs3917434    C    T    131.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367774    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
1    169698442    rs79478039    G    T    523.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.314;DB;DP=36;Dels=0.0;FS=3.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.479;QD=14.53;ReadPosRankSum=-0.644;SNPEFF_AMINO_ACID_CHANGE=F263L;SNPEFF_CODON_CHANGE=ttC/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169698327_169698515;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367775    GT:AD:DP:GQ:PL    0/1:18,18:36:99:553,0,509
1    169698825    rs1534904    T    G    2385.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1277;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461085    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2419,187,0
1    169698921    rs2076059    C    T    493.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461085    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:527,42,0
1    169699819    rs3917419    G    A    554.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461085    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:587,45,0
1    169762807    rs10489177    T    G    578.12    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.626;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=59.51;MQ0=0;MQRankSum=0.247;QD=12.3;ReadPosRankSum=-0.204;SNPEFF_AMINO_ACID_CHANGE=E10D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169761670_169763038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303469    GT:AD:DP:GQ:PL    0/1:27,20:47:99:608,0,887
1    169797127    rs6427223    G    A    287.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.344;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.07;QD=10.26;ReadPosRankSum=-0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456684    GT:AD:DP:GQ:PL    0/1:16,12:28:99:317,0,580
1    169798745    rs17529513    C    G    98.78    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=14.11;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456684    GT:AD:DP:GQ:PL    0/1:3,4:7:94.94:129,0,95
1    169818880    rs2272918    G    A    156.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:190,15,0
1    169819605    rs6664099    A    G    92.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    169823660    rs1062976    C    T    1406.02    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DB;DP=92;Dels=0.0;FS=2.835;HRun=0;HaplotypeScore=0.5784;MQ=59.75;MQ0=0;MQRankSum=-0.098;QD=15.28;ReadPosRankSum=-0.733;SNPEFF_AMINO_ACID_CHANGE=V586;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169823411_169824105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367771    GT:AD:DP:GQ:PL    0/1:42,50:92:99:1436,0,1295
1    169823718    rs4656197    T    C    2868.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.72;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=Q567R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_169823411_169824105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367771    GT:AD:DP:GQ:PL    1/1:1,82:83:99:2901,238,0
1    169831690    rs5778632    CTCTT    C    3278.85    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=8.26;DB;DP=143;FS=6.839;HRun=0;HaplotypeScore=681.5968;IndelType=D;MQ=57.36;MQ0=1;MQRankSum=-0.739;QD=22.77;ReadPosRankSum=0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    0/1:75,69:143:99:3279,0,5071
1    169831993    rs7525259    A    G    500.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:533,42,0
1    169833822    rs1883436    T    C    147.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:180,15,0
1    169835950    rs12133843    A    C    307.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:340,24,0
1    169838278    rs17603022    G    A    100.94    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9469;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=14.42;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    0/1:2,5:7:65.41:131,0,65
1    169839595    rs10919260    A    G    192.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=21.35;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    0/1:3,6:9:91.45:222,0,91
1    169847683    rs6683056    G    A    687    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367770    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:720,54,0
1    169890933    rs518928    A    G    392.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361580    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:426,36,0
1    169930049    rs542570    C    T    193.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361580    GT:AD:DP:GQ:PL    1/1:0,8:8:24.01:227,24,0
1    169930051    rs615485    T    C    188.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361580    GT:AD:DP:GQ:PL    1/1:0,8:8:24.01:221,24,0
1    169941761    rs511443    A    T    565.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361580    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:599,45,0
1    169947146    rs11396984    C    CA    291.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=88.675;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=-0.248;QD=18.23;ReadPosRankSum=-0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361580    GT:AD:DP:GQ:PL    1/1:3,13:16:16.27:333,16,0
1    169951748    rs638486    A    G    811.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361580    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:845,72,0
1    169952385    rs2057249    G    T    521.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361580    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:555,42,0
1    170001151    rs11277624    ATACTCATT    A    2112.96    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=6.049;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=382.7826;IndelType=D;MQ=47.54;MQ0=0;MQRankSum=-5.602;QD=42.26;ReadPosRankSum=1.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490550    GT:AD:DP:GQ:PL    0/1:24,26:50:99:2152,0,3018
1    170004508    rs12750962    A    T    160.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=13.34;ReadPosRankSum=1.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490550    GT:AD:DP:GQ:PL    0/1:6,6:12:99:190,0,218
1    170015700    rs7555871    T    C    282.42    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=2.489;QD=16.61;ReadPosRankSum=-0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361580    GT:AD:DP:GQ:PL    0/1:7,10:17:99:312,0,239
1    170135430    rs111301492    A    G    85.89    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=0.731;QD=14.32;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    0/1:1,5:6:18.39:116,0,18
1    170135434    rs111283972    T    C    85.69    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=0.198;QD=12.24;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    0/1:2,5:7:48.82:116,0,49
1    170135447    rs71125230    A    AT    129.70    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;FS=0.0;HRun=8;HaplotypeScore=100.758;IndelType=I;MQ=29.0;MQ0=0;MQRankSum=-1.2;QD=9.98;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    0/1:8,5:13:99:169,0,152
1    170135510    rs576572    T    C    669.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.5;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:702,60,0
1    170135669    rs6427234    C    T    1436    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=57.71;MQ0=0;MQRankSum=-0.072;QD=13.81;ReadPosRankSum=-1.086;SNPEFF_AMINO_ACID_CHANGE=C119;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_170135643_170135892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    0/1:53,51:104:99:1466,0,1591
1    170135693    rs41272485    A    G    1307.82    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.275;DB;DP=97;Dels=0.0;FS=0.773;HRun=2;HaplotypeScore=0.9332;MQ=58.02;MQ0=0;MQRankSum=0.698;QD=13.48;ReadPosRankSum=2.376;SNPEFF_AMINO_ACID_CHANGE=I127M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_170135643_170135892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    0/1:52,45:97:99:1338,0,1704
1    170135760    rs6427235    T    C    1180.81    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.235;DB;DP=106;Dels=0.0;FS=2.6;HRun=2;HaplotypeScore=11.2802;MQ=58.95;MQ0=0;MQRankSum=0.714;QD=11.14;ReadPosRankSum=-1.535;SNPEFF_AMINO_ACID_CHANGE=S150P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_170135643_170135892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    0/1:62,43:106:99:1211,0,2079
1    170135828    rs41272487    C    T    1900.66    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.037;DB;DP=122;Dels=0.0;FS=0.674;HRun=0;HaplotypeScore=2.559;MQ=59.62;MQ0=0;MQRankSum=-0.465;QD=15.58;ReadPosRankSum=-2.285;SNPEFF_AMINO_ACID_CHANGE=Y172;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_170135643_170135892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    0/1:56,65:122:99:1931,0,1725
1    170136787    rs12075997    C    T    295.54    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.254;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=22.73;ReadPosRankSum=-1.099;SNPEFF_AMINO_ACID_CHANGE=S247;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_170136627_170136931;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439373    GT:AD:DP:GQ:PL    0/1:3,10:13:81.79:326,0,82
1    170501385    rs7531125    A    C    1826.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=G32;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_170501272_170501425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GORAB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367762    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1859,138,0
1    170501521    rs112197426    AC    A    332.67    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=45.7466;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=0.38;QD=19.57;ReadPosRankSum=2.874;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GORAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367762    GT:AD:DP:GQ:PL    0/1:6,11:17:99:372,0,239
1    170508755    rs5778667    G    GT    427.69    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.776;DB;DP=36;FS=0.0;HRun=6;HaplotypeScore=93.8746;IndelType=I;MQ=60.6;MQ0=0;MQRankSum=-0.302;QD=11.88;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GORAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367762    GT:AD:DP:GQ:PL    0/1:21,15:36:99:467,0,422
1    170511604    rs7538037    T    C    3170.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=35.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GORAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465717    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3203,244,0
1    170521376    rs913257    G    A    785.84    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.037;DB;DP=44;Dels=0.0;FS=2.932;HRun=2;HaplotypeScore=3.4896;MQ=59.48;MQ0=0;MQRankSum=-0.305;QD=17.86;ReadPosRankSum=0.525;SNPEFF_AMINO_ACID_CHANGE=E320K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_170521156_170522587;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GORAB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367763    GT:AD:DP:GQ:PL    0/1:16,28:44:99:816,0,470
1    170521650    rs7552922    T    G    357.33    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.766;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.179;QD=11.53;ReadPosRankSum=-0.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GORAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475113    GT:AD:DP:GQ:PL    0/1:17,14:31:99:387,0,567
1    170967395    rs151291051    G    A    827.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.957;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.436;QD=13.35;ReadPosRankSum=-0.253;SNPEFF_AMINO_ACID_CHANGE=V526I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_170967295_170967947;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367758    GT:AD:DP:GQ:PL    0/1:31,31:62:99:858,0,993
1    171061990    rs2064074    A    G    262.15    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=21.85;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367755    GT:AD:DP:GQ:PL    0/1:4,8:12:99:292,0,118
1    171076966    rs2266782    G    A    711.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.431;DB;DP=54;Dels=0.0;FS=1.082;HRun=4;HaplotypeScore=0.734;MQ=59.57;MQ0=0;MQRankSum=0.046;QD=13.18;ReadPosRankSum=0.597;SNPEFF_AMINO_ACID_CHANGE=E138K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_171076816_171076978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542847    GT:AD:DP:GQ:PL    0/1:24,30:54:99:742,0,719
1    171077198    rs1920149    G    A    983.44    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.737;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.724;QD=15.61;ReadPosRankSum=-1.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472784    GT:AD:DP:GQ:PL    0/1:29,34:63:99:1013,0,955
1    171077372    rs2066534    C    G    470.86    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DB;DP=29;Dels=0.0;FS=5.711;HRun=0;HaplotypeScore=1.9328;MQ=60.0;MQ0=0;MQRankSum=-0.112;QD=16.24;ReadPosRankSum=-0.562;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472784    GT:AD:DP:GQ:PL    0/1:11,18:29:99:501,0,373
1    171112490    rs1736565    C    T    701.58    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.631;DB;DP=66;Dels=0.0;FS=4.054;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=10.63;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=Q105*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_171112310_171112498;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO6P;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000236166    GT:AD:DP:GQ:PL    0/1:39,27:66:99:732,0,1243
1    171112621    rs9663011    C    G    106.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.78;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236166    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,163
1    171119021    rs1795244    T    C    59.33    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9783;MQ=54.65;MQ0=0;MQRankSum=-0.876;QD=6.59;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236166    GT:AD:DP:GQ:PL    0/1:5,4:9:89.32:89,0,160
1    171120956    rs7882954    C    G    399.92    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.016;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=17.39;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236166    GT:AD:DP:GQ:PL    0/1:11,12:23:99:430,0,341
1    171130598    rs56674917    CACACA    C    1706.21    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=4.818;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=288.2682;IndelType=D;MQ=54.18;MQ0=0;MQRankSum=-1.95;QD=34.12;ReadPosRankSum=-0.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FMO6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236166    GT:AD:DP:GQ:PL    0/1:22,28:50:99:1745,0,1849
1    171155103    rs6657314    C    T    449.96    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.729;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.716;QD=18.75;ReadPosRankSum=1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209929    GT:AD:DP:GQ:PL    0/1:9,15:24:99:480,0,257
1    171165661    rs7516877    A    G    65.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.42;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462643    GT:AD:DP:GQ:PL    0/1:4,3:7:95.95:96,0,149
1    171168545    rs2307492    T    C    826.60    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=60;Dels=0.0;FS=12.059;HRun=0;HaplotypeScore=0.5784;MQ=59.62;MQ0=0;MQRankSum=0.842;QD=13.78;ReadPosRankSum=0.235;SNPEFF_AMINO_ACID_CHANGE=F182S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_171168485_171168627;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000209929    GT:AD:DP:GQ:PL    0/1:29,31:60:99:857,0,973
1    171168585    rs2020861    A    G    677.24    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.404;DB;DP=51;Dels=0.0;FS=2.512;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.33;QD=13.28;ReadPosRankSum=-1.498;SNPEFF_AMINO_ACID_CHANGE=S195;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_171168485_171168627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000209929    GT:AD:DP:GQ:PL    0/1:25,26:51:99:707,0,884
1    171168804    rs2075987    A    C    151.93    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=18.99;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483192    GT:AD:DP:GQ:PL    0/1:1,7:8:19.61:182,0,20
1    171178152    rs2020869    A    G    674.83    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4921;MQ=59.52;MQ0=0;MQRankSum=0.203;QD=14.06;ReadPosRankSum=0.693;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488431    GT:AD:DP:GQ:PL    0/1:25,22:48:99:705,0,775
1    171227216    rs10912675    T    C    370.34    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DB;DP=30;Dels=0.0;FS=2.341;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.466;QD=12.34;ReadPosRankSum=-1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367750    GT:AD:DP:GQ:PL    0/1:16,14:30:99:400,0,525
1    171244759    rs2076320    A    C    183.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=7.65;ReadPosRankSum=-0.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459868    GT:AD:DP:GQ:PL    0/1:15,9:24:99:214,0,511
1    171300959    rs2294482    T    C    1341.70    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=2.48;DB;DP=76;Dels=0.0;FS=3.745;HRun=1;HaplotypeScore=1.663;MQ=59.09;MQ0=0;MQRankSum=-0.244;QD=17.65;ReadPosRankSum=-0.432;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367749    GT:AD:DP:GQ:PL    0/1:29,47:76:99:1372,0,874
1    171301033    rs2294483    C    G    850.37    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=20.9135;MQ=57.94;MQ0=0;QD=25.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367749    GT:AD:DP:GQ:PL    1/1:0,33:34:78.13:883,78,0
1    171301043    rs71103398    G    GA    460.19    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.503;DB;DP=31;FS=0.0;HRun=12;HaplotypeScore=234.012;IndelType=I;MQ=56.96;MQ0=0;MQRankSum=2.285;QD=14.84;ReadPosRankSum=0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367749    GT:AD:DP:GQ:PL    0/1:10,20:31:1.39:498,0,1
1    171302094    rs4140632    A    C    566.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367749    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:600,45,0
1    171302108    .    T    C    259.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=21.63;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367749    GT:AD:DP:GQ:PL    0/1:4,8:12:99:290,0,133
1    171303925    rs3820170    C    T    852.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462992    GT:AD:DP:GQ:PL    1/1:0,30:30:66.22:886,66,0
1    171311003    rs1042772    A    C    405.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475780    GT:AD:DP:GQ:PL    1/1:0,16:16:36.09:439,36,0
1    171505019    .    G    T    527.75    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.77;DP=47;Dels=0.0;FS=1.954;HRun=6;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=-1.42;QD=11.23;ReadPosRankSum=0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476522    GT:AD:DP:GQ:PL    0/1:28,19:47:99:558,0,885
1    171514848    .    T    TTTTA    274.25    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DP=24;FS=0.0;HRun=0;HaplotypeScore=115.5727;IndelType=I;MQ=58.65;MQ0=0;MQRankSum=0.361;QD=11.43;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338920    GT:AD:DP:GQ:PL    0/1:18,5:24:99:313,0,142
1    171557699    .    C    G    359.67    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.207;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.048;QD=9.46;ReadPosRankSum=-0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338920    GT:AD:DP:GQ:PL    0/1:24,14:38:99:390,0,800
1    171607702    rs2032555    C    T    1737.86    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.503;DB;DP=151;Dels=0.0;FS=0.619;HRun=0;HaplotypeScore=0.5784;MQ=59.85;MQ0=0;MQRankSum=0.659;QD=11.51;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000037502    GT:AD:DP:GQ:PL    0/1:83,68:151:99:1768,0,2422
1    171673749    rs3835498    AT    A    176.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=27.5334;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=14.73;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236192    GT:AD:DP:GQ:PL    0/1:6,6:12:99:216,0,252
1    171679958    rs10913530    G    A    1157.36    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.952;DB;DP=77;Dels=0.0;FS=2.184;HRun=1;HaplotypeScore=2.8932;MQ=59.7;MQ0=0;MQRankSum=-0.811;QD=15.03;ReadPosRankSum=0.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236192    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1187,0,1214
1    171751051    rs2294719    A    G    1418.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362019    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1452,111,0
1    171751236    rs2294720    T    C    1540.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=H42;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_171751128_171751260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458517    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1574,117,0
1    171751416    rs7541128    G    A    157.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361735    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
1    171751439    rs6425415    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361735    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    171753039    rs2232816    A    G    648.23    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=45;Dels=0.0;FS=14.833;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.592;QD=14.41;ReadPosRankSum=-0.355;SNPEFF_AMINO_ACID_CHANGE=M104V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_171752880_171753639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458517    GT:AD:DP:GQ:PL    0/1:19,26:45:99:678,0,641
1    171755071    rs17650204    A    G    176.47    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=14.71;ReadPosRankSum=-0.831;SNPEFF_AMINO_ACID_CHANGE=K166;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_171755027_171755218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367737    GT:AD:DP:GQ:PL    0/1:5,7:12:99:206,0,128
1    171755182    rs2232819    G    A    109.31    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=9.11;ReadPosRankSum=-1.134;SNPEFF_AMINO_ACID_CHANGE=M203I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_171755027_171755218;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367737    GT:AD:DP:GQ:PL    0/1:7,5:12:99:139,0,221
1    171761458    rs2232824    T    C    305.05    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8055;MQ=58.2;MQ0=0;MQRankSum=1.437;QD=23.47;ReadPosRankSum=0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478330    GT:AD:DP:GQ:PL    0/1:3,10:13:87.99:335,0,88
1    171763549    rs2232825    C    T    277.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.564;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.214;QD=8.69;ReadPosRankSum=-1.07;SNPEFF_AMINO_ACID_CHANGE=Y266;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_171763536_171763667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341850    GT:AD:DP:GQ:PL    0/1:20,12:32:99:308,0,706
1    171765964    rs1801898    A    G    231.88    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=13.64;ReadPosRankSum=-0.722;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466643    GT:AD:DP:GQ:PL    0/1:9,8:17:99:262,0,310
1    172011059    rs3736791    G    A    438.20    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=47;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.156;QD=9.32;ReadPosRankSum=-2.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    0/1:28,19:47:99:468,0,986
1    172018052    rs2295611    T    A    320.43    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=57.88;MQ0=0;MQRankSum=-0.836;QD=16.02;ReadPosRankSum=1.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    0/1:9,11:20:99:350,0,308
1    172038079    rs12760234    T    C    260.86    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=23;Dels=0.0;FS=2.993;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.661;QD=11.34;ReadPosRankSum=-1.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    0/1:14,9:23:99:291,0,468
1    172051262    rs141269413    A    C    36.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
1    172100596    rs2421986    G    T    63.70    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=7.96;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    0/1:5,3:8:93.69:94,0,158
1    172100831    rs2421987    G    A    91.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.729;QD=10.14;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    0/1:5,4:9:99:121,0,182
1    172277845    .    AT    A    404.20    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DP=48;FS=3.998;HRun=14;HaplotypeScore=168.8635;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=1.524;QD=8.42;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    0/1:17,29:48:99:443,0,233
1    172356437    rs6688654    A    G    2757.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.0027;MQ=59.47;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=T110;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172356273_172356499;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000485254    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2791,223,0
1    172356582    rs2269612    G    A    554.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:587,45,0
1    172362744    rs10688277    A    AAAG    5123.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.0;HRun=0;HaplotypeScore=221.7944;IndelType=I;MQ=54.49;MQ0=0;QD=64.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491124    GT:AD:DP:GQ:PL    1/1:7,71:80:99:5124,235,0
1    172362949    rs3768445    G    T    1603.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.8321;MQ=58.73;MQ0=0;QD=29.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491124    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1637,135,0
1    172376809    rs9425600    T    C    931.34    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.18;QD=18.26;ReadPosRankSum=-0.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355305    GT:AD:DP:GQ:PL    0/1:23,28:51:99:961,0,758
1    172410967    rs1063412    G    A    1097.98    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.399;DB;DP=70;Dels=0.0;FS=4.989;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.798;QD=15.69;ReadPosRankSum=-0.925;SNPEFF_AMINO_ACID_CHANGE=P266S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172410598_172411993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIGC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258324    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1128,0,1034
1    172411496    rs2230471    A    G    4506.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.04;DB;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=-1.626;QD=34.14;ReadPosRankSum=0.965;SNPEFF_AMINO_ACID_CHANGE=G89;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172410598_172411993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIGC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258324    GT:AD:DP:GQ:PL    1/1:1,131:132:99:4507,301,0
1    172411768    rs13932    T    C    789.82    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.042;DB;DP=74;Dels=0.0;FS=1.021;HRun=2;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.479;QD=10.67;ReadPosRankSum=1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367727    GT:AD:DP:GQ:PL    0/1:44,30:74:99:820,0,1480
1    172417781    rs2157451    A    G    375.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367727    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
1    172422209    rs2285175    C    T    1159.07    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.357;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.954;QD=17.56;ReadPosRankSum=0.707;SNPEFF_AMINO_ACID_CHANGE=V16;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172422033_172422329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf105;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367725    GT:AD:DP:GQ:PL    0/1:28,38:66:99:1189,0,867
1    172425529    rs2285170    C    G    857.62    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.475;DB;DP=91;Dels=0.0;FS=0.896;HRun=0;HaplotypeScore=1.7803;MQ=59.49;MQ0=0;MQRankSum=0.827;QD=9.42;ReadPosRankSum=-1.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367725    GT:AD:DP:GQ:PL    0/1:56,35:91:99:888,0,1612
1    172431210    rs4916261    G    A    284.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367725    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:317,24,0
1    172434375    rs2901655    G    A    607.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367725    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:640,48,0
1    172437592    rs1129942    G    A    5114.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.612;DB;DP=155;Dels=0.0;FS=8.665;HRun=3;HaplotypeScore=1.8606;MQ=59.1;MQ0=0;MQRankSum=-0.717;QD=33.0;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=S127N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172437589_172437971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf105;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367725    GT:AD:DP:GQ:PL    1/1:3,152:155:99:5114,326,0
1    172501643    rs2239816    T    C    632.53    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.013;DB;DP=41;Dels=0.0;FS=1.262;HRun=1;HaplotypeScore=1.7287;MQ=59.44;MQ0=0;MQRankSum=-0.486;QD=15.43;ReadPosRankSum=-1.222;SNPEFF_AMINO_ACID_CHANGE=S11P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172501489_172501941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367723    GT:AD:DP:GQ:PL    0/1:18,23:41:99:663,0,522
1    172502041    rs10798043    A    G    320.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367723    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:353,27,0
1    172502479    rs2285144    T    C    114.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.9;SNPEFF_AMINO_ACID_CHANGE=I164;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172502317_172502637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367723    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:147,12,0
1    172522602    rs1159378    G    A    202.48    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=10.66;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263688    GT:AD:DP:GQ:PL    0/1:12,7:19:99:232,0,431
1    172539442    rs3752515    A    G    217.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263688    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
1    172547465    rs2285664    A    G    414.34    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.553;DB;DP=31;Dels=0.0;FS=1.446;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.449;QD=13.37;ReadPosRankSum=0.298;SNPEFF_AMINO_ACID_CHANGE=E456;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172547438_172547529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263688    GT:AD:DP:GQ:PL    0/1:17,14:31:99:444,0,484
1    172548301    rs41264544    C    G    500.26    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.298;QD=20.84;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263688    GT:AD:DP:GQ:PL    0/1:9,15:24:99:530,0,304
1    172554867    rs10752995    T    A    348.37    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.222;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.42;QD=11.24;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263688    GT:AD:DP:GQ:PL    0/1:18,13:31:99:378,0,656
1    172558524    rs41264546    A    G    388.05    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.754;DB;DP=36;Dels=0.0;FS=11.467;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=10.78;ReadPosRankSum=-2.499;SNPEFF_AMINO_ACID_CHANGE=P761;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_172557900_172559066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263688    GT:AD:DP:GQ:PL    0/1:20,16:36:99:418,0,679
1    172633350    rs5030772    A    G    103.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=17.21;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340030    GT:AD:DP:GQ:PL    0/1:2,4:6:53.33:133,0,53
1    172634734    rs2639653    T    C    1518.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340030    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1552,114,0
1    173020230    rs61761341    A    AC    620.65    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=96.7139;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=0.692;QD=19.4;ReadPosRankSum=1.206;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239468    GT:AD:DP:GQ:PL    0/1:15,17:32:99:660,0,536
1    173157541    rs17346501    T    C    215.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=13.49;ReadPosRankSum=-0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488053    GT:AD:DP:GQ:PL    0/1:8,8:16:99:246,0,285
1    173429995    rs12140760    G    A    213.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=15.26;ReadPosRankSum=0.101;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL645568.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421168    GT:AD:DP:GQ:PL    0/1:7,7:14:99:244,0,163
1    173472551    rs10912625    T    C    354.55    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.062;DB;DP=23;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.093;QD=15.42;ReadPosRankSum=0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:10,13:23:99:385,0,309
1    173474429    rs12026637    T    C    345.39    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.043;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.461;QD=12.34;ReadPosRankSum=1.14;SNPEFF_AMINO_ACID_CHANGE=Q1089;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_173474386_173474470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:14,13:28:99:375,0,325
1    173493312    rs10912633    A    G    30.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.09;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536496    GT:AD:DP:GQ:PL    0/1:4,2:6:60.52:61,0,142
1    173493348    rs16846113    T    C    42.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=10.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536496    GT:AD:DP:GQ:PL    0/1:2,2:4:31.62:72,0,32
1    173503037    rs10912635    A    G    295.82    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.62;QD=22.76;ReadPosRankSum=-1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:4,9:13:99:326,0,126
1    173503103    rs10912636    C    T    157.48    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:187,0,22
1    173503864    rs10798285    A    G    188.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=20.94;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:3,6:9:92.35:218,0,92
1    173516871    rs16846206    G    C    534.39    PASS    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=1.241;DB;DP=25;Dels=0.0;FS=4.669;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=2.028;QD=21.38;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=A403G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_173516828_173516923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536496    GT:AD:DP:GQ:PL    0/1:7,18:25:99:564,0,174
1    173516903    rs10494490    A    G    445.33    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.291;QD=17.13;ReadPosRankSum=0.87;SNPEFF_AMINO_ACID_CHANGE=N392;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_173516828_173516923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536496    GT:AD:DP:GQ:PL    0/1:10,16:26:99:475,0,235
1    173524107    rs10912643    A    G    114.05    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.29;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:2,5:7:65.46:144,0,65
1    173552529    rs7541082    A    G    182.32    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.599;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=10.13;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:10,8:18:99:212,0,360
1    173552783    rs12032386    G    A    831.02    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=62;Dels=0.0;FS=3.881;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.621;QD=13.4;ReadPosRankSum=-0.593;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:33,29:62:99:861,0,1058
1    173556699    rs301698    G    T    216.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
1    173569176    rs17350830    T    C    174.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.493;QD=13.42;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367714    GT:AD:DP:GQ:PL    0/1:7,6:13:99:204,0,249
1    173594213    rs301701    T    C    147.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=14.73;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333279    GT:AD:DP:GQ:PL    0/1:5,5:10:99:177,0,175
1    173744660    rs72709402    C    T    71.69    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.96;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209884    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,168
1    173819421    rs67987090    C    CA    40.55    QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=21;FS=0.0;HRun=15;HaplotypeScore=100.8068;IndelType=I;MQ=56.0;MQ0=0;MQRankSum=-0.566;QD=1.93;ReadPosRankSum=-0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239457    GT:AD:DP:GQ:PL    0/1:14,5:21:79.58:80,0,139
1    173855208    rs16846520    A    G    614    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=44;Dels=0.0;FS=5.519;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.474;QD=13.95;ReadPosRankSum=0.595;SNPEFF_AMINO_ACID_CHANGE=T394;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_173854774_173855680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367703    GT:AD:DP:GQ:PL    0/1:22,22:44:99:644,0,794
1    174188285    rs2103640    G    A    556.89    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.05;MQ0=0;MQRankSum=-0.78;QD=11.37;ReadPosRankSum=-0.717;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367692    GT:AD:DP:GQ:PL    0/1:30,19:49:99:587,0,939
1    174274062    rs2142864    A    G    256.47    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.259;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.205;QD=10.69;ReadPosRankSum=-0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251507    GT:AD:DP:GQ:PL    0/1:14,10:24:99:286,0,465
1    174274349    rs2860909    T    G    169.09    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=15.37;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251507    GT:AD:DP:GQ:PL    0/1:4,7:11:99:199,0,134
1    174362902    rs10912777    C    A    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251507    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    174362965    rs10912778    T    C    197.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=24.73;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251507    GT:AD:DP:GQ:PL    0/1:2,6:8:51.51:228,0,52
1    174417231    rs7516240    G    A    1219.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251507    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1253,99,0
1    174418179    rs143410373    T    C    1648.81    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=102;Dels=0.0;FS=3.758;HRun=0;HaplotypeScore=0.8667;MQ=59.77;MQ0=0;MQRankSum=1.382;QD=16.16;ReadPosRankSum=0.21;SNPEFF_AMINO_ACID_CHANGE=S310;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_174417212_174418683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR52;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367685    GT:AD:DP:GQ:PL    0/1:42,60:102:99:1679,0,1257
1    174516999    rs41266050    C    T    370.03    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.056;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.866;QD=9.25;ReadPosRankSum=-0.307;SNPEFF_AMINO_ACID_CHANGE=P542S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_174516975_174517699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357444    GT:AD:DP:GQ:PL    0/1:25,15:40:99:400,0,815
1    174927388    rs10798329    G    C    534.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251507    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:568,42,0
1    174969271    rs1046439    C    T    36.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392064    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
1    174983633    rs1058741    T    C    67.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=13.43;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACYBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367679    GT:AD:DP:GQ:PL    0/1:2,3:5:69.42:97,0,69
1    175014557    rs6425313    T    C    251.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SDCCAG3P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326105    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:285,24,0
1    175014607    rs11808101    T    C    240.37    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=17.17;ReadPosRankSum=-2.133;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SDCCAG3P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326105    GT:AD:DP:GQ:PL    0/1:5,9:14:99:270,0,168
1    175046488    rs2072033    G    A    2459.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=57.09;MQ0=0;MQRankSum=1.552;QD=30.37;ReadPosRankSum=-1.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:1,80:81:99:2493,162,0
1    175046789    rs2072032    A    G    630.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.413;DB;DP=21;Dels=0.0;FS=4.191;HRun=3;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.404;QD=30.02;ReadPosRankSum=-0.083;SNPEFF_AMINO_ACID_CHANGE=R79G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175046520_175046963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:1,20:21:18.40:663,18,0
1    175049673    .    A    C    33.98    QDFilter2    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=6.7033;MQ=49.96;MQ0=0;MQRankSum=0.456;QD=1.7;ReadPosRankSum=2.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    0/1:2,18:20:58.10:64,0,58
1    175052828    rs2072031    G    A    323.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:357,27,0
1    175053101    rs2072030    A    T    888.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:921,69,0
1    175054548    rs1573758    C    T    129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.56;SNPEFF_AMINO_ACID_CHANGE=H414;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175054541_175054630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:162,12,0
1    175066967    rs61827435    G    A    123.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
1    175086461    rs6690229    A    G    295.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
1    175087677    rs6656284    G    A    2997.44    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.5057;MQ=58.56;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,96:97:99:3030,229,0
1    175087729    rs6696455    T    C    3708.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=59.43;MQ0=0;QD=30.4;SNPEFF_AMINO_ACID_CHANGE=W630R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175087697_175087960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539081    GT:AD:DP:GQ:PL    1/1:0,122:122:99:3709,283,0
1    175092674    rs2285215    C    T    1228.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9968;MQ=57.52;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=P753L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175092536_175092799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539081    GT:AD:DP:GQ:PL    1/1:0,37:38:96.26:1261,96,0
1    175092707    rs10798333    C    T    678.32    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=41;Dels=0.0;FS=1.237;HRun=0;HaplotypeScore=3.3399;MQ=56.64;MQ0=0;MQRankSum=-2.519;QD=16.54;ReadPosRankSum=1.598;SNPEFF_AMINO_ACID_CHANGE=T764M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175092536_175092799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539081    GT:AD:DP:GQ:PL    0/1:19,22:41:99:708,0,504
1    175092840    rs2072041    T    C    807.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.94;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,25:25:63.17:841,63,0
1    175096333    rs2072040    A    G    1020.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.17;MQ0=0;QD=36.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,28:28:81.25:1054,81,0
1    175096389    rs10798334    C    T    158.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
1    175097349    rs7547567    C    T    552.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:585,42,0
1    175097864    rs12022593    G    A    577.32    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.269;DB;DP=32;Dels=0.0;FS=19.826;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.192;QD=18.04;ReadPosRankSum=1.42;SNPEFF_AMINO_ACID_CHANGE=T1104;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175097731_175097882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    0/1:13,19:32:99:607,0,442
1    175097991    rs10798335    C    T    151.47    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.93;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    0/1:2,6:8:58.15:181,0,58
1    175104790    rs4651323    T    C    33.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.75;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    0/1:3,2:5:63.73:64,0,110
1    175104796    rs4651324    G    T    174.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
1    175105880    rs2072037    G    A    280.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
1    175105942    rs4650703    G    A    607.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:641,48,0
1    175113578    rs10912897    T    C    1551.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.51;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=N1040;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175113523_175113686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539081    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1584,123,0
1    175116046    rs112900440    C    CT    188.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.296;DB;DP=24;FS=0.0;HRun=15;HaplotypeScore=201.0514;IndelType=I;MQ=48.65;MQ0=1;MQRankSum=-0.888;QD=7.55;ReadPosRankSum=-2.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:10,13:24:2.77:228,3,0
1    175116252    rs4651335    C    G    332.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.68;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239462    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:365,30,0
1    175299301    rs2027867    T    C    425.09    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=32;Dels=0.0;FS=3.192;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.917;QD=13.28;ReadPosRankSum=0.178;SNPEFF_AMINO_ACID_CHANGE=Q1144;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175299210_175299371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367673    GT:AD:DP:GQ:PL    0/1:15,17:32:99:455,0,506
1    175306536    rs2269587    A    G    173.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.205;QD=14.49;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:6,6:12:99:204,0,216
1    175323446    rs2301432    A    G    62.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.99;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:6,3:9:92.93:93,0,220
1    175324518    rs55715761    GCA    G    436.84    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=4.215;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=120.3928;IndelType=D;MQ=56.2;MQ0=0;MQRankSum=-0.952;QD=17.47;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:13,12:25:99:476,0,718
1    175324651    rs2228359    A    G    633.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.13;DB;DP=52;Dels=0.0;FS=1.191;HRun=0;HaplotypeScore=3.3777;MQ=57.37;MQ0=0;MQRankSum=1.99;QD=12.19;ReadPosRankSum=-1.75;SNPEFF_AMINO_ACID_CHANGE=D1079;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175324639_175324769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:26,26:52:99:664,0,734
1    175331977    .    C    T    410.48    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.69;DP=48;Dels=0.0;FS=1.417;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.992;QD=8.55;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:31,17:48:99:440,0,1019
1    175335412    rs1385540    A    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    175348543    rs859426    T    C    73.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
1    175348723    rs859427    C    T    983.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_AMINO_ACID_CHANGE=R643K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175348688_175348873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    1/1:0,33:33:81.25:1016,81,0
1    175355128    rs859436    C    G    2177.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2210,163,0
1    175355152    rs72723450    C    T    695.81    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=67;Dels=0.0;FS=2.144;HRun=0;HaplotypeScore=3.2783;MQ=60.0;MQ0=0;MQRankSum=-0.571;QD=10.39;ReadPosRankSum=-1.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:40,27:67:99:726,0,1225
1    175355391    rs859437    A    G    539.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=25.68;SNPEFF_AMINO_ACID_CHANGE=T518;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175355168_175355437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    1/1:0,21:21:42.13:572,42,0
1    175360690    rs859444    C    T    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    175362736    rs3752517    G    A    856.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    1/1:0,23:23:69.20:890,69,0
1    175363204    rs12023965    C    T    256.13    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.241;QD=15.07;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:8,9:17:99:286,0,269
1    175363227    rs12042417    T    A    135.35    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=15.04;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:4,5:9:99:165,0,144
1    175365663    rs859446    G    A    157.66    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=17;Dels=0.0;FS=1.913;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.759;QD=9.27;ReadPosRankSum=1.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:11,6:17:99:188,0,327
1    175375334    rs859400    C    T    367.26    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.571;DB;DP=34;Dels=0.0;FS=6.036;HRun=0;HaplotypeScore=0.9665;MQ=59.32;MQ0=0;MQRankSum=-0.387;QD=10.8;ReadPosRankSum=1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:21,13:34:99:397,0,593
1    175375469    rs2239819    C    A    1246.86    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.945;DB;DP=69;Dels=0.0;FS=3.241;HRun=1;HaplotypeScore=1.8939;MQ=59.67;MQ0=0;MQRankSum=-1.34;QD=18.07;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=A128S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175375352_175375913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:30,39:69:99:1277,0,860
1    175375683    rs859399    T    C    1013.47    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.563;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.75;MQ0=0;MQRankSum=1.053;QD=13.34;ReadPosRankSum=-0.146;SNPEFF_AMINO_ACID_CHANGE=T56;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175375352_175375913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:41,35:76:99:1043,0,1292
1    175375802    rs859398    T    C    1389.72    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.473;DB;DP=110;Dels=0.0;FS=2.547;HRun=0;HaplotypeScore=2.5589;MQ=59.79;MQ0=0;MQRankSum=0.106;QD=12.63;ReadPosRankSum=1.307;SNPEFF_AMINO_ACID_CHANGE=I17V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_175375352_175375913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263525    GT:AD:DP:GQ:PL    0/1:57,53:110:99:1420,0,1778
1    175916267    rs6674353    T    C    1778.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1812,135,0
1    175916506    rs34893141    A    ATT    67.41    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=21;FS=0.0;HRun=18;HaplotypeScore=230.1457;IndelType=I;MQ=51.1;MQ0=0;MQRankSum=-0.755;QD=3.21;ReadPosRankSum=-1.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    0/1:12,5:21:99:106,0,100
1    175937540    rs4534339    C    T    1943.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1977,144,0
1    175937897    rs4347169    C    G    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    176012807    rs4233165    G    A    3007.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.73;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3040,223,0
1    176050138    rs2502828    G    A    551.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498306    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:585,45,0
1    176118219    rs3748618    G    A    761.89    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.104;DB;DP=61;Dels=0.0;FS=1.215;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.148;QD=12.49;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    0/1:29,32:61:99:792,0,979
1    176132292    rs704828    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    176145277    rs471534    T    C    342.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:375,27,0
1    176153658    rs791744    T    C    2043.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308769    GT:AD:DP:GQ:PL    1/1:0,51:51:99:2077,153,0
1    176659463    rs10913241    C    T    741.07    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DB;DP=100;Dels=0.0;FS=1.774;HRun=0;HaplotypeScore=3.5601;MQ=59.58;MQ0=0;MQRankSum=-0.133;QD=7.41;ReadPosRankSum=-2.61;SNPEFF_AMINO_ACID_CHANGE=P776;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_176659273_176660340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367661    GT:AD:DP:GQ:PL    0/1:67,32:100:99:771,0,2080
1    176664842    rs12138725    C    A    998.43    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.128;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.428;QD=14.47;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367661    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1028,0,911
1    176665102    rs67178111    ATGTGTGTGTGTGTGTGTGTG    A    1016.38    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.807;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=361.5437;IndelType=D;MQ=50.69;MQ0=0;MQRankSum=-0.849;QD=48.4;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367661    GT:AD:DP:GQ:PL    0/1:9,11:21:99:1055,0,794
1    176671912    rs71944190    TGAGAGAGA    T    412.81    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=226.9463;IndelType=D;MQ=56.49;MQ0=0;MQRankSum=0.521;QD=19.66;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367662    GT:AD:DP:GQ:PL    0/1:14,7:21:99:452,0,786
1    176671912    rs111906977    T    A    58.73    HaplotypeScoreFilter13    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=20;Dels=0.05;FS=0.0;HRun=0;HaplotypeScore=34.8829;MQ=56.49;MQ0=0;MQRankSum=-0.656;QD=2.8;ReadPosRankSum=1.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367662    GT:AD:DP:GQ:PL    0/1:8,12:20:88.72:89,0,151
1    176681165    rs147536730    ATG    A    172.43    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=75.9971;IndelType=D;MQ=57.77;MQ0=0;MQRankSum=-0.895;QD=8.21;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367662    GT:AD:DP:GQ:PL    0/1:14,7:21:99:211,0,110
1    176734756    rs3737759    C    T    834.63    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.345;DB;DP=47;Dels=0.0;FS=3.323;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-2.227;QD=17.76;ReadPosRankSum=0.721;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367662    GT:AD:DP:GQ:PL    0/1:20,27:47:99:865,0,632
1    176759336    rs2076336    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367662    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    176760806    rs6425396    C    T    40.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.1;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367662    GT:AD:DP:GQ:PL    0/1:2,2:4:54.89:70,0,55
1    176769358    rs10913256    T    C    288.25    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.093;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.279;QD=12.53;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367662    GT:AD:DP:GQ:PL    0/1:13,10:23:99:318,0,440
1    176809368    rs12118034    C    T    1676.64    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=4.589;DB;DP=106;Dels=0.0;FS=2.626;HRun=0;HaplotypeScore=2.5482;MQ=59.61;MQ0=0;MQRankSum=-0.326;QD=15.82;ReadPosRankSum=0.188;SNPEFF_AMINO_ACID_CHANGE=D1754;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_176809309_176809407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367662    GT:AD:DP:GQ:PL    0/1:45,61:106:99:1707,0,1201
1    176837817    rs12025402    A    G    137.40    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.9;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424564    GT:AD:DP:GQ:PL    0/1:1,5:6:24.18:167,0,24
1    176845528    rs2076341    C    T    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    176851747    rs2076337    G    A    80.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.24;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:111,0,31
1    176857347    rs2072935    A    G    887.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    1/1:0,31:31:66.22:920,66,0
1    176863836    rs2281180    G    C    1973.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=H934Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_176863698_176863966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2007,153,0
1    176863867    rs2228956    T    C    1968.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=H924R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_176863698_176863966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2001,156,0
1    176918136    rs4652208    A    C    103.48    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.5;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,178
1    176992553    rs172917    A    G    76.64    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.29;MQ0=0;MQRankSum=1.532;QD=6.97;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=C475;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_176992540_176992707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    0/1:6,5:11:99:107,0,195
1    176992676    rs10798496    C    T    204.87    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.19;MQ0=0;MQRankSum=-0.713;QD=8.91;ReadPosRankSum=0.217;SNPEFF_AMINO_ACID_CHANGE=Q434;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_176992540_176992707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    0/1:13,10:23:99:235,0,383
1    177000203    rs6682507    C    T    136    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.43;MQ0=0;MQRankSum=0.135;QD=11.33;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361833    GT:AD:DP:GQ:PL    0/1:7,5:12:99:166,0,245
1    177198818    rs6674725    G    T    43.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361539    GT:AD:DP:GQ:PL    0/1:1,2:3:14.67:74,0,15
1    177198998    rs3176441    T    C    248.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=22;Dels=0.0;FS=1.707;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.022;QD=11.31;ReadPosRankSum=-0.824;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_177198937_177199281;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361539    GT:AD:DP:GQ:PL    0/1:12,10:22:99:279,0,430
1    177199426    rs12734367    G    A    78.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.01;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361539    GT:AD:DP:GQ:PL    0/1:2,4:6:70.19:108,0,70
1    177250670    rs1045736    G    A    815.04    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.783;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.179;QD=15.67;ReadPosRankSum=0.651;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478325    GT:AD:DP:GQ:PL    0/1:25,27:52:99:845,0,698
1    177899562    rs626976    C    T    94.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=13.47;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:3,4:7:97.06:124,0,97
1    177902387    rs61745560    C    A    786.10    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=1.492;DB;DP=58;Dels=0.0;FS=1.133;HRun=0;HaplotypeScore=2.179;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=13.55;ReadPosRankSum=1.372;SNPEFF_AMINO_ACID_CHANGE=A613S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_177902349_177902447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414025    GT:AD:DP:GQ:PL    0/1:27,31:58:99:816,0,580
1    177902482    rs3813648    G    A    361.61    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=28;Dels=0.0;FS=12.916;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.024;QD=12.91;ReadPosRankSum=0.512;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:15,13:28:99:392,0,474
1    177902725    rs3813649    C    T    940.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.607;QD=10.45;ReadPosRankSum=-0.734;SNPEFF_AMINO_ACID_CHANGE=S557N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_177902619_177902771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414025    GT:AD:DP:GQ:PL    0/1:54,36:90:99:971,0,1620
1    177902753    rs591120    G    C    1093.40    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.301;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.163;QD=11.88;ReadPosRankSum=-0.594;SNPEFF_AMINO_ACID_CHANGE=P548A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_177902619_177902771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414025    GT:AD:DP:GQ:PL    0/1:53,39:92:99:1123,0,1520
1    177905469    rs7522194    C    A    684.53    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.253;QD=13.42;ReadPosRankSum=1.071;SNPEFF_AMINO_ACID_CHANGE=Q529H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_177905433_177905500;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414025    GT:AD:DP:GQ:PL    0/1:27,23:50:99:715,0,875
1    177906292    rs61816275    C    T    170    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;Dels=0.0;FS=2.596;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-1.376;QD=10.62;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:9,7:16:99:200,0,310
1    177906657    rs6676302    G    A    98.48    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.457;DB;DP=15;Dels=0.0;FS=2.869;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;MQRankSum=2.024;QD=6.57;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:11,4:15:99:128,0,308
1    177913980    rs532842    T    C    201.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464631    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
1    177915474    rs842192    A    C    361.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.12;SNPEFF_AMINO_ACID_CHANGE=I620S;SNPEFF_CODON_CHANGE=aTt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_177914467_177915666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000464631    GT:AD:DP:GQ:PL    1/1:0,15:15:30.10:395,30,0
1    177916865    rs113224501    G    A    59.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=41.96;MQ0=0;MQRankSum=0.406;QD=9.91;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486567    GT:AD:DP:GQ:PL    0/1:3,3:6:79.41:89,0,79
1    177916872    .    G    A    89.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=40.36;MQ0=0;MQRankSum=0.0;QD=12.75;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486567    GT:AD:DP:GQ:PL    0/1:3,4:7:69.67:119,0,70
1    177916889    .    A    G    67.43    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5983;MQ=40.36;MQ0=0;MQRankSum=0.937;QD=9.63;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486567    GT:AD:DP:GQ:PL    0/1:3,4:7:18.42:97,0,18
1    177916890    rs61816278    A    G    60.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5983;MQ=40.36;MQ0=0;MQRankSum=-0.55;QD=8.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486567    GT:AD:DP:GQ:PL    0/1:3,4:7:45.04:91,0,45
1    177917479    rs6695715    G    A    913.75    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.342;DB;DP=75;Dels=0.0;FS=3.602;HRun=1;HaplotypeScore=2.6646;MQ=59.07;MQ0=0;MQRankSum=1.177;QD=12.18;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:41,34:75:99:944,0,1260
1    177923440    rs12129817    T    G    580.94    PASS    AB=0.241;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=29;Dels=0.0;FS=1.762;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.994;QD=20.03;ReadPosRankSum=2.217;SNPEFF_AMINO_ACID_CHANGE=P163;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_177923414_177923511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414025    GT:AD:DP:GQ:PL    0/1:7,22:29:99:611,0,182
1    177929554    rs10913472    C    T    3067.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3333;MQ=59.74;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308284    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3101,235,0
1    177929987    rs12040910    T    C    3062.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=H292R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_177929926_177930074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308284    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3095,232,0
1    177930096    rs867275    T    C    1289.46    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.044;DB;DP=101;Dels=0.0;FS=5.461;HRun=0;HaplotypeScore=2.8395;MQ=59.31;MQ0=0;MQRankSum=-0.236;QD=12.77;ReadPosRankSum=1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:55,46:101:99:1319,0,1488
1    177930642    rs945640    G    A    461.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=4.212;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=-0.38;QD=13.97;ReadPosRankSum=1.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:18,15:33:99:491,0,522
1    177930894    rs945641    C    T    1070.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    1/1:0,31:31:84.25:1103,84,0
1    177933443    rs3813651    G    A    587.08    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=39;Dels=0.0;FS=4.363;HRun=0;HaplotypeScore=1.5782;MQ=57.71;MQ0=0;MQRankSum=-1.027;QD=15.05;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:17,22:39:99:617,0,440
1    177933505    rs3813652    C    T    328.67    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.923;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.95;MQ0=0;MQRankSum=1.022;QD=14.94;ReadPosRankSum=-1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:12,10:22:99:359,0,286
1    177934044    rs10798587    T    C    97.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.17;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,139
1    177934351    rs72703030    G    T    992.37    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.438;DB;DP=55;Dels=0.0;FS=1.298;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.043;QD=18.04;ReadPosRankSum=-0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:23,32:55:99:1022,0,732
1    177934467    rs12135725    T    C    142.65    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=17.83;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:2,6:8:58.90:173,0,59
1    177935050    rs1889981    T    A    932.43    PASS    AB=0.319;AC=1;AF=0.50;AN=2;BaseQRankSum=3.526;DB;DP=47;Dels=0.0;FS=1.295;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=19.84;ReadPosRankSum=0.011;SNPEFF_AMINO_ACID_CHANGE=P130;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_177935028_177935140;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308284    GT:AD:DP:GQ:PL    0/1:15,32:47:99:962,0,433
1    177935203    rs954502    A    G    544.19    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.407;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.195;QD=13.27;ReadPosRankSum=1.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:18,23:41:99:574,0,595
1    177935275    rs1415085    A    G    692.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:726,54,0
1    177936599    rs6667752    T    G    100.47    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.769;QD=9.13;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359075.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239472    GT:AD:DP:GQ:PL    0/1:7,4:11:99:130,0,210
1    178000521    rs10494508    C    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-568K15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481349    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    178000903    rs7519563    T    A    318.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-568K15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481349    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
1    178004055    rs7529349    T    C    146.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-568K15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481349    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:180,15,0
1    178006990    rs10798592    T    C    117.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-568K15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462729    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:150,12,0
1    178420434    rs445065    C    T    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367649    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    178482984    rs10798610    T    G    153.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258298    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
1    178483231    rs10913563    G    A    1404.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=A37T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_178483162_178483320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367642    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1438,111,0
1    178489978    rs3813636    T    G    1866.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=34.57;SNPEFF_AMINO_ACID_CHANGE=L171R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_178489808_178490009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319416    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1900,144,0
1    178514622    rs12568310    C    T    228.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=P3L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_178514348_178515038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL513013.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367636    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:262,21,0
1    178746031    rs75184054    C    T    105.37    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.07;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:135,0,28
1    178776985    rs6690324    G    A    89.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    178780650    rs12131426    A    G    481.43    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.952;QD=17.19;ReadPosRankSum=0.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:12,16:28:99:511,0,399
1    178790583    rs2275099    T    C    31.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.55;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:5,2:7:61.81:62,0,188
1    178820159    rs1544124    C    A    162.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.203;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.053;QD=10.14;ReadPosRankSum=-0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:8,8:16:99:192,0,298
1    178854162    rs6425503    C    T    247.80    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.337;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=14.58;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:8,9:17:99:278,0,283
1    178858624    rs34280213    A    T    115.59    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.333;QD=8.26;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:9,5:14:99:146,0,320
1    178858711    rs10798635    C    A    587.32    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DB;DP=51;Dels=0.0;FS=4.162;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.804;QD=11.52;ReadPosRankSum=0.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:31,20:51:99:617,0,1038
1    178858759    rs3753534    G    A    965.40    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.146;DB;DP=92;Dels=0.0;FS=1.799;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=10.49;ReadPosRankSum=-1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:51,41:92:99:995,0,1706
1    178858891    rs116413802    A    G    712.75    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.085;DB;DP=42;Dels=0.0;FS=13.637;HRun=0;HaplotypeScore=0.9993;MQ=59.45;MQ0=0;MQRankSum=0.088;QD=16.97;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324778    GT:AD:DP:GQ:PL    0/1:20,22:42:99:743,0,656
1    178866674    rs17674780    A    G    85.65    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=9.52;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477383    GT:AD:DP:GQ:PL    0/1:4,5:9:99:116,0,142
1    179013204    rs11802142    G    A    883.60    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.333;DB;DP=49;Dels=0.0;FS=2.536;HRun=0;HaplotypeScore=0.9999;MQ=59.15;MQ0=0;MQRankSum=0.674;QD=18.03;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=R74;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179012850_179013359;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263733    GT:AD:DP:GQ:PL    0/1:18,31:49:99:914,0,520
1    179041011    rs3820163    A    G    2263.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263733    GT:AD:DP:GQ:PL    1/1:0,71:72:99:2297,181,0
1    179041398    rs2025584    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535251    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    179051300    rs2296377    T    C    51.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_AMINO_ACID_CHANGE=F13L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179051221_179051522;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352445    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
1    179052002    rs2274228    T    G    60.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.11;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RALGPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535251    GT:AD:DP:GQ:PL    0/1:2,3:5:64:91,0,64
1    179054692    rs912758    T    G    2070.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.94;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_179054507_179055028;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447595    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2103,169,0
1    179076672    rs28913894    G    A    106.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=13.34;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367623    GT:AD:DP:GQ:PL    0/1:3,5:8:87.14:137,0,87
1    179079190    rs3818433    T    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392043    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    179080221    rs113450962    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344730    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    179084080    rs2274230    T    G    1138.79    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.541;DB;DP=77;Dels=0.0;FS=0.866;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=0.444;QD=14.79;ReadPosRankSum=-0.977;SNPEFF_AMINO_ACID_CHANGE=L462;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179084013_179084165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408940    GT:AD:DP:GQ:PL    0/1:35,42:77:99:1169,0,1032
1    179086419    rs72207641    T    TA    360.35    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.991;DB;DP=39;FS=4.746;HRun=11;HaplotypeScore=141.6265;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=-0.63;QD=9.24;ReadPosRankSum=1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344730    GT:AD:DP:GQ:PL    0/1:22,17:39:99:399,0,272
1    179087934    rs2171959    T    C    397.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.388;DB;DP=28;Dels=0.0;FS=6.185;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.345;QD=14.21;ReadPosRankSum=0.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344730    GT:AD:DP:GQ:PL    0/1:14,14:28:99:428,0,417
1    179089213    rs1858551    C    T    173.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.112;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=6.43;ReadPosRankSum=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344730    GT:AD:DP:GQ:PL    0/1:18,9:27:99:204,0,643
1    179089475    rs9726961    C    G    583.03    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.431;QD=17.15;ReadPosRankSum=-0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344730    GT:AD:DP:GQ:PL    0/1:16,18:34:99:613,0,571
1    179089491    rs9728480    A    C    444.10    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=14.8;ReadPosRankSum=0.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344730    GT:AD:DP:GQ:PL    0/1:16,14:30:99:474,0,558
1    179089518    rs9727252    C    G    173.37    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=11.56;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344730    GT:AD:DP:GQ:PL    0/1:8,7:15:99:203,0,267
1    179100291    rs2486998    T    C    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508127    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
1    179198653    rs2306941    T    C    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367623    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
1    179271948    .    A    AT    449.90    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.463;DP=58;FS=6.617;HRun=12;HaplotypeScore=227.9294;IndelType=I;MQ=57.98;MQ0=0;MQRankSum=0.44;QD=7.76;ReadPosRankSum=-0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367619    GT:AD:DP:GQ:PL    0/1:41,16:58:99:489,0,482
1    179272116    rs2493121    T    A    78.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=13.16;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367619    GT:AD:DP:GQ:PL    0/1:2,4:6:63.85:109,0,64
1    179304892    rs1034269    T    C    148.30    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=18.54;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367619    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,101
1    179310700    rs2248979    C    T    40.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426956    GT:AD:DP:GQ:PL    0/1:2,2:4:59.19:71,0,59
1    179312102    rs4651024    T    C    744.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.44;DB;DP=45;Dels=0.0;FS=1.419;HRun=0;HaplotypeScore=1.5774;MQ=59.49;MQ0=0;MQRankSum=-0.058;QD=16.55;ReadPosRankSum=-0.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426956    GT:AD:DP:GQ:PL    0/1:18,27:45:99:775,0,618
1    179314242    rs56287445    C    T    721.09    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.445;DB;DP=46;Dels=0.0;FS=12.277;HRun=0;HaplotypeScore=1.9576;MQ=58.99;MQ0=0;MQRankSum=0.537;QD=15.68;ReadPosRankSum=0.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426956    GT:AD:DP:GQ:PL    0/1:20,26:46:99:751,0,678
1    179316687    rs13306729    A    G    393.39    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2772;MQ=58.99;MQ0=0;MQRankSum=0.161;QD=17.1;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367619    GT:AD:DP:GQ:PL    0/1:8,15:23:99:423,0,227
1    179319580    rs3753527    T    C    1937.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367619    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1970,141,0
1    179320249    rs13306727    G    T    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367619    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,107
1    179320279    rs13306730    A    G    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.25;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367619    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,114
1    179335952    rs11804234    C    A    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
1    179347530    rs10913739    C    G    36.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=6.12;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:4,2:6:66.72:67,0,114
1    179348646    rs71111916    T    TG    676.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.34;DB;DP=30;FS=5.724;HRun=1;HaplotypeScore=79.3187;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=-0.077;QD=22.55;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509175    GT:AD:DP:GQ:PL    0/1:12,18:30:99:716,0,259
1    179354273    rs144830533    C    T    56.70    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:4,3:7:86.69:87,0,135
1    179354304    rs7541905    A    G    227.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.053;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.683;QD=14.23;ReadPosRankSum=-0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:8,8:16:99:258,0,263
1    179363275    rs16854064    C    A    117.23    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=6.9;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:9,8:17:99:147,0,319
1    179364059    rs6666939    G    T    108.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=13.51;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:3,5:8:97.65:138,0,98
1    179380472    rs5779024    GT    G    490.29    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=4.981;DB;DP=41;FS=0.0;HRun=8;HaplotypeScore=104.3416;IndelType=D;MQ=58.48;MQ0=0;MQRankSum=0.795;QD=11.96;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:19,22:41:99:529,0,396
1    179398536    rs6662859    G    A    152.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.2;MQ0=0;QD=30.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:185,15,0
1    179398563    rs4652382    C    G    94.40    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.92;MQ0=0;MQRankSum=-0.72;QD=13.49;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:2,5:7:66.71:124,0,67
1    179398875    rs4652383    T    A    31.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.55;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:5,2:7:61.81:62,0,185
1    179398932    rs55708548    G    C    36.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
1    179414105    rs11577579    A    C    729.54    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.687;QD=19.2;ReadPosRankSum=1.284;SNPEFF_AMINO_ACID_CHANGE=I456L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179414105_179414339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434088    GT:AD:DP:GQ:PL    0/1:15,23:38:99:760,0,441
1    179426268    rs73036735    A    G    828.69    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.835;DB;DP=53;Dels=0.0;FS=1.095;HRun=0;HaplotypeScore=1.7356;MQ=54.44;MQ0=0;MQRankSum=-0.486;QD=15.35;ReadPosRankSum=1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:24,29:53:99:859,0,704
1    179437817    rs72719297    C    T    308.53    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.591;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.617;QD=9.07;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:21,13:34:99:339,0,737
1    179437827    rs7514278    G    A    1118.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1152,84,0
1    179452381    rs10494519    C    T    610.43    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=3.33;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.239;QD=15.26;ReadPosRankSum=0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    0/1:19,21:40:99:640,0,513
1    179460806    rs17369441    C    T    513.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.931;DB;DP=49;Dels=0.0;FS=11.36;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.178;QD=10.49;ReadPosRankSum=-0.324;SNPEFF_AMINO_ACID_CHANGE=A676V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179460673_179460872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434088    GT:AD:DP:GQ:PL    0/1:28,21:49:99:544,0,812
1    179460979    rs41267594    G    T    85.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=8.55;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457238    GT:AD:DP:GQ:PL    0/1:6,4:10:99:115,0,181
1    179461945    rs72704430    G    A    427.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.117;QD=12.23;ReadPosRankSum=-0.117;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457238    GT:AD:DP:GQ:PL    0/1:20,15:35:99:458,0,679
1    179461975    rs59377201    T    C    451.17    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=3.796;DB;DP=50;Dels=0.0;FS=2.204;HRun=5;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.379;QD=9.02;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457238    GT:AD:DP:GQ:PL    0/1:26,24:50:99:481,0,890
1    179462149    rs7549194    A    G    1256.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=35.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457238    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1289,102,0
1    179462219    rs73036768    A    G    60.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.56;ReadPosRankSum=1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457238    GT:AD:DP:GQ:PL    0/1:5,3:8:90.51:91,0,171
1    179494612    rs112780116    CTACA    C    988.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=182.72;IndelType=D;MQ=61.21;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    1/1:7,22:29:66.22:1030,66,0
1    179494665    rs4620484    C    T    374.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:407,30,0
1    179497359    rs6698201    T    C    334.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359183    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
1    179520151    rs1410590    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360322    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    179520254    rs1410591    C    G    286.17    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.448;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=-0.764;QD=11.01;ReadPosRankSum=-1.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360322    GT:AD:DP:GQ:PL    0/1:16,10:26:99:316,0,572
1    179520422    rs3818587    T    C    1362.99    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=3.814;DB;DP=79;Dels=0.0;FS=3.155;HRun=0;HaplotypeScore=1.9427;MQ=59.42;MQ0=0;MQRankSum=1.661;QD=17.25;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=L278;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179519674_179520586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367616    GT:AD:DP:GQ:PL    0/1:33,46:79:99:1393,0,981
1    179520506    rs1410592    G    A    669.98    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.465;DB;DP=49;Dels=0.0;FS=4.568;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.805;QD=13.67;ReadPosRankSum=-0.949;SNPEFF_AMINO_ACID_CHANGE=A250;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179519674_179520586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367616    GT:AD:DP:GQ:PL    0/1:26,23:49:99:700,0,765
1    179520660    rs2274624    C    G    412.73    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.688;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=19.65;ReadPosRankSum=-0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360322    GT:AD:DP:GQ:PL    0/1:8,13:21:99:443,0,261
1    179526052    rs73051834    A    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXDND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360322    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    179533915    rs3738423    G    A    541.76    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.399;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.07;QD=12.31;ReadPosRankSum=0.282;SNPEFF_AMINO_ACID_CHANGE=S96;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179533825_179533928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367615    GT:AD:DP:GQ:PL    0/1:23,21:44:99:572,0,720
1    179544898    rs1079292    T    C    115.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.02;SNPEFF_AMINO_ACID_CHANGE=G34;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179544726_179545068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367615    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
1    179561645    rs4652418    A    C    421.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:454,33,0
1    179561683    rs4652419    A    T    537.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:571,51,0
1    179562143    rs4652420    G    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:74,0,31
1    179562520    rs78183476    A    G    69.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.46;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:100,0,30
1    179562707    rs12070589    G    A    645.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.416;DB;DP=46;Dels=0.0;FS=1.253;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=14.03;ReadPosRankSum=-0.307;SNPEFF_AMINO_ACID_CHANGE=P115;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179562595_179563002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:23,23:46:99:675,0,672
1    179562740    rs61310274    G    C    711.70    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.425;DB;DP=52;Dels=0.0;FS=1.265;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.104;QD=13.69;ReadPosRankSum=0.085;SNPEFF_AMINO_ACID_CHANGE=R126S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179562595_179563002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:28,24:52:99:742,0,839
1    179563033    rs6698734    A    G    282.30    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=16.61;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:8,9:17:99:312,0,215
1    179563041    rs6701343    T    C    211.32    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.847;QD=13.21;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:9,7:16:99:241,0,267
1    179563058    rs6698746    A    G    173.85    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.657;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.705;QD=10.87;ReadPosRankSum=0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:10,6:16:99:204,0,292
1    179600001    rs6704505    A    G    724.70    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.081;DB;DP=48;Dels=0.0;FS=8.425;HRun=2;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-0.353;QD=15.1;ReadPosRankSum=-1.039;SNPEFF_AMINO_ACID_CHANGE=K358E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179599902_179600055;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:21,27:48:99:755,0,618
1    179600264    rs113300630    T    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    179604864    rs4628468    C    T    1600.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=D454;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179604802_179605022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1634,120,0
1    179605058    rs4483370    G    A    667.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=37.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:701,51,0
1    179620253    rs6682666    G    A    296.88    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=18.55;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    0/1:7,9:16:99:327,0,238
1    179632727    rs7513095    G    A    446.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294848    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:480,36,0
1    179816017    rs79921581    C    G    1679.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=38.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1AIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367612    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1712,123,0
1    179854026    rs10913901    A    T    166.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1AIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271583    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
1    179887125    rs627897    G    A    2609.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6197;MQ=59.39;MQ0=0;QD=34.33;SNPEFF_AMINO_ACID_CHANGE=A296;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_179887080_179887374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1AIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325993    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2642,196,0
1    180013103    rs56271885    CT    C    328.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=22.2836;IndelType=D;MQ=61.19;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP350;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367607    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
1    180022760    rs2040083    A    T    791.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP350;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490047    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:824,63,0
1    180145088    rs2298206    A    G    94.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.56;SNPEFF_AMINO_ACID_CHANGE=T145;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180145066_180145168;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367600    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:127,12,0
1    180151666    rs2242110    A    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367600    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    180151744    rs2242111    T    C    84.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367600    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    180155376    rs2298207    C    G    677.73    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.3971;MQ=60.93;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367600    GT:AD:DP:GQ:PL    1/1:0,23:23:51.17:711,51,0
1    180155382    rs35890604    AG    A    730.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=130.1597;IndelType=D;MQ=61.53;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367600    GT:AD:DP:GQ:PL    1/1:1,20:21:60.19:772,60,0
1    180158875    .    C    G    213.79    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=17.82;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392029    GT:AD:DP:GQ:PL    0/1:5,7:12:99:244,0,172
1    180159797    rs3215795    TC    T    1295.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=3;HaplotypeScore=102.7763;IndelType=D;MQ=60.55;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392029    GT:AD:DP:GQ:PL    1/1:3,36:39:99:1338,108,0
1    180180669    rs164980    A    G    203.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:237,18,0
1    180240752    rs3845397    C    T    111.97    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.586;DB;DP=16;Dels=0.0;FS=6.117;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=7.0;ReadPosRankSum=1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACBD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496993    GT:AD:DP:GQ:PL    0/1:11,5:16:99:142,0,352
1    180243524    rs7536561    A    G    2206.52    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.148;DB;DP=163;Dels=0.0;FS=0.581;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.098;QD=13.54;ReadPosRankSum=1.318;SNPEFF_AMINO_ACID_CHANGE=N328S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180243320_180244188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263726    GT:AD:DP:GQ:PL    0/1:86,77:163:99:2237,0,2855
1    180257692    rs2254465    A    C    254.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACBD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367595    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:288,24,0
1    180283659    rs2764433    T    C    157.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACBD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367595    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:190,15,0
1    180366483    rs10798759    G    C    334.91    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.454;QD=17.63;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACBD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367595    GT:AD:DP:GQ:PL    0/1:8,11:19:99:365,0,217
1    180757056    rs3761904    A    G    2073.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367589    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2107,160,0
1    180757117    rs34984251    G    GT    1194.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=122.5242;IndelType=I;MQ=60.83;MQ0=0;QD=45.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367589    GT:AD:DP:GQ:PL    1/1:0,26:26:78.27:1237,78,0
1    180803922    rs2271669    T    C    425.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367589    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:459,36,0
1    180885430    rs10732273    T    C    476.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_AMINO_ACID_CHANGE=L64P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180885290_180886236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367588    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:509,39,0
1    180886039    rs61811250    C    T    771.28    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.798;DB;DP=68;Dels=0.0;FS=3.464;HRun=0;HaplotypeScore=1.8499;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=11.34;ReadPosRankSum=0.763;SNPEFF_AMINO_ACID_CHANGE=P267L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180885290_180886236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367588    GT:AD:DP:GQ:PL    0/1:37,31:68:99:801,0,1241
1    180886810    rs3761905    C    G    80.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496210    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
1    180897521    rs7544551    C    T    6521.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=205;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7357;MQ=59.66;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367588    GT:AD:DP:GQ:PL    1/1:0,205:205:99:6521,494,0
1    180897569    rs3747958    C    T    2285.83    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=5.095;DB;DP=207;Dels=0.0;FS=1.815;HRun=0;HaplotypeScore=1.5767;MQ=59.46;MQ0=0;MQRankSum=1.234;QD=11.04;ReadPosRankSum=0.472;SNPEFF_AMINO_ACID_CHANGE=T355;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180897566_180897709;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367588    GT:AD:DP:GQ:PL    0/1:120,86:207:99:2316,0,3149
1    180905352    rs3795505    C    T    539.73    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.282;DB;DP=52;Dels=0.0;FS=1.131;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.006;QD=10.38;ReadPosRankSum=1.326;SNPEFF_AMINO_ACID_CHANGE=S390;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180904251_180905806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367587    GT:AD:DP:GQ:PL    0/1:32,20:52:99:570,0,1031
1    180905448    rs3795504    G    T    658.20    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.136;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=1.419;QD=11.97;ReadPosRankSum=2.573;SNPEFF_AMINO_ACID_CHANGE=L422F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180904251_180905806;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367587    GT:AD:DP:GQ:PL    0/1:34,21:55:99:688,0,940
1    180905694    rs3795503    C    T    249.88    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.288;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.133;QD=13.88;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=N504;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180904251_180905806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367587    GT:AD:DP:GQ:PL    0/1:8,10:18:99:280,0,266
1    180913597    rs2331995    A    G    1163.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=N1078D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180913525_180913652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367588    GT:AD:DP:GQ:PL    1/1:0,35:36:99:1197,99,0
1    180913874    rs944234    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483705    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    180914304    rs944235    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1614;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483705    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
1    180953853    rs3747957    A    G    306.18    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DB;DP=24;Dels=0.0;FS=1.706;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.912;QD=12.76;ReadPosRankSum=-1.333;SNPEFF_AMINO_ACID_CHANGE=N116;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180953813_180953907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542060    GT:AD:DP:GQ:PL    0/1:11,13:24:99:336,0,297
1    180958946    rs4111520    A    G    97.52    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=7.5;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258301    GT:AD:DP:GQ:PL    0/1:6,7:13:99:128,0,180
1    180962526    rs34036241    C    T    492.70    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=52;Dels=0.0;FS=1.05;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.472;QD=9.48;ReadPosRankSum=-0.769;SNPEFF_AMINO_ACID_CHANGE=Q112;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_180962499_180962561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258301    GT:AD:DP:GQ:PL    0/1:30,22:52:99:523,0,970
1    181018180    rs2236411    C    G    423.65    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.229;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.6;MQ0=0;MQRankSum=0.844;QD=11.77;ReadPosRankSum=1.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282990    GT:AD:DP:GQ:PL    0/1:19,17:36:99:454,0,548
1    181022895    rs2275469    C    A    356.66    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.02;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=22.29;ReadPosRankSum=0.793;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367578    GT:AD:DP:GQ:PL    0/1:5,11:16:99:387,0,160
1    181024404    rs3747956    G    A    904.44    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.841;DB;DP=61;Dels=0.0;FS=4.01;HRun=0;HaplotypeScore=1.8319;MQ=59.62;MQ0=0;MQRankSum=-0.82;QD=14.83;ReadPosRankSum=-0.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367578    GT:AD:DP:GQ:PL    0/1:27,34:61:99:934,0,843
1    181057874    rs6425663    T    G    35.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.87;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_181057638_181059977;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IER5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367577    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
1    181058540    rs3747954    G    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=V168I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_181057638_181059977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IER5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367577    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
1    181058643    rs1361365    A    G    66.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.36;SNPEFF_AMINO_ACID_CHANGE=Q202R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_181057638_181059977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IER5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367577    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:99,9,0
1    181058891    rs3747951    C    T    151.80    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.549;QD=5.84;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=P285S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_181057638_181059977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IER5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367577    GT:AD:DP:GQ:PL    0/1:17,9:26:99:182,0,451
1    181205368    rs67918272    ACCT    A    203.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=21.2034;IndelType=D;MQ=55.21;MQ0=0;QD=40.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-380B22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319701    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:245,15,0
1    181205722    rs10732972    C    T    1141.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-380B22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319701    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1174,87,0
1    181205821    rs9659333    A    G    173.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-380B22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319701    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
1    181206635    rs3845425    T    C    746.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-380B22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319701    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:779,57,0
1    181549547    rs10494540    T    G    106.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.71;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    0/1:2,4:6:66.40:136,0,66
1    181684605    rs12407563    A    G    1207.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,38:38:96.30:1240,96,0
1    181686216    rs7540850    T    C    2870.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.458;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9632;MQ=59.75;MQ0=0;MQRankSum=1.692;QD=31.55;ReadPosRankSum=1.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524607    GT:AD:DP:GQ:PL    1/1:1,90:91:99:2904,229,0
1    181686693    rs2280864    C    T    51.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524607    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
1    181701423    rs2280865    C    T    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
1    181706552    rs2280866    G    A    410.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:444,33,0
1    181719679    rs704332    C    T    505.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:539,39,0
1    181724209    rs704331    A    G    92.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:125,12,0
1    181726413    rs704330    G    A    243.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
1    181727273    rs704329    G    A    1687.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1721,129,0
1    181727593    rs199917    T    C    86.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    181740201    rs199928    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    181750469    rs704328    G    T    403.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:436,33,0
1    181752769    rs112594566    A    AT    1404.69    PASS    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=1.443;DB;DP=103;FS=1.288;HRun=14;HaplotypeScore=558.2548;IndelType=I;MQ=53.36;MQ0=0;MQRankSum=-0.015;QD=13.64;ReadPosRankSum=-0.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    0/1:33,62:103:68.30:1444,0,68
1    181752923    rs36163765    AAGCTT    A    6324.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;FS=0.0;HRun=0;HaplotypeScore=702.964;IndelType=D;MQ=52.83;MQ0=0;QD=54.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:13,104:117:99:6324,316,0
1    181753030    rs546191    T    C    1396.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=38.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1430,108,0
1    181759657    rs704326    G    A    4766.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=58.81;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=A1562T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_181759581_181759692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367567    GT:AD:DP:GQ:PL    1/1:0,136:137:99:4767,364,0
1    181767983    rs144714729    C    G    205.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=21;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.67;QD=9.77;ReadPosRankSum=-0.249;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357570    GT:AD:DP:GQ:PL    0/1:12,9:21:99:235,0,440
1    182354850    rs2296520    A    G    3516.55    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.703;DB;DP=241;Dels=0.0;FS=1.015;HRun=0;HaplotypeScore=2.3654;MQ=59.44;MQ0=0;MQRankSum=-2.398;QD=14.59;ReadPosRankSum=-2.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLUL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462444    GT:AD:DP:GQ:PL    0/1:113,128:241:99:3517,0,3424
1    182355046    rs2296519    A    G    1158.57    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.413;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.09;QD=14.3;ReadPosRankSum=-0.477;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLUL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462444    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1189,0,1308
1    182356247    rs17462824    T    C    536.02    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.749;DB;DP=51;Dels=0.0;FS=5.556;HRun=0;HaplotypeScore=3.6874;MQ=60.0;MQ0=0;MQRankSum=0.728;QD=10.51;ReadPosRankSum=0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLUL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311223    GT:AD:DP:GQ:PL    0/1:32,19:51:99:566,0,866
1    182356399    rs1058111    A    G    720.96    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.189;DB;DP=69;Dels=0.0;FS=0.939;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.947;QD=10.45;ReadPosRankSum=-1.582;SNPEFF_AMINO_ACID_CHANGE=S65;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182356266_182356427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLUL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311223    GT:AD:DP:GQ:PL    0/1:41,28:69:99:751,0,1340
1    182369078    rs6698722    G    A    1336.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=36.12;SNPEFF_AMINO_ACID_CHANGE=P181;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182367252_182369751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEDDM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367565    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1369,102,0
1    182369233    rs6674281    A    G    1146.68    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=92;Dels=0.0;FS=2.972;HRun=0;HaplotypeScore=0.9947;MQ=59.29;MQ0=0;MQRankSum=-0.34;QD=12.46;ReadPosRankSum=0.004;SNPEFF_AMINO_ACID_CHANGE=Y130H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182367252_182369751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEDDM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367565    GT:AD:DP:GQ:PL    0/1:48,44:92:99:1177,0,1554
1    182369738    rs7551829    G    A    85.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.43;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_182367252_182369751;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEDDM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367565    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
1    182377078    rs10797774    A    G    319.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00272;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367563    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:352,27,0
1    182377180    rs68029644    CA    C    282.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.274;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=83.6744;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=20.18;ReadPosRankSum=-2.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00272;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367563    GT:AD:DP:GQ:PL    1/1:6,8:14:28:325,28,0
1    182429295    rs10572829    CTG    C    499.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=87.7594;IndelType=D;MQ=60.93;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427189    GT:AD:DP:GQ:PL    1/1:7,15:23:47.97:541,48,0
1    182491107    rs607269    A    C    761.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=40.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:794,57,0
1    182496829    rs7535533    A    G    2755.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=34.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2789,208,0
1    182497021    rs266511    C    A    196.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:229,18,0
1    182501933    rs266534    C    A    6020.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.179;MQ=59.74;MQ0=0;QD=33.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456971    GT:AD:DP:GQ:PL    1/1:1,178:179:99:6021,448,0
1    182502033    rs266535    G    T    2949.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=37.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456971    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2982,217,0
1    182509269    rs266531    G    A    459.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:493,36,0
1    182509292    rs3856115    A    G    674.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,22:22:63.16:707,63,0
1    182509617    rs3911280    C    A    1221.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1255,99,0
1    182509646    rs12749557    T    C    825.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:859,66,0
1    182517238    rs9787011    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    182517357    rs6657620    G    C    1456.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6828;MQ=58.81;MQ0=0;QD=37.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RGSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294854    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1490,111,0
1    182545221    rs672527    C    T    244.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539397    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
1    182550200    rs501286    A    G    582.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367559    GT:AD:DP:GQ:PL    1/1:0,18:18:54.13:615,54,0
1    182551337    rs627928    A    C    3630.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.61;MQ0=0;QD=34.25;SNPEFF_AMINO_ACID_CHANGE=D541E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182551188_182551393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASEL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367559    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3630,268,0
1    182554557    rs486907    C    T    572.17    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.189;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.617;QD=13.31;ReadPosRankSum=-1.121;SNPEFF_AMINO_ACID_CHANGE=R106Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182554462_182556105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASEL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543858    GT:AD:DP:GQ:PL    0/1:20,23:43:99:602,0,637
1    182556036    rs3738579    A    G    610.24    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.458;DB;DP=33;Dels=0.0;FS=2.927;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.345;QD=18.49;ReadPosRankSum=-0.038;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_182554462_182556105;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367559    GT:AD:DP:GQ:PL    0/1:14,19:33:99:640,0,425
1    182569626    rs1144566    T    C    902.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=28.21;SNPEFF_AMINO_ACID_CHANGE=H137R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182567758_182569648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367558    GT:AD:DP:GQ:PL    1/1:0,32:32:75.23:936,75,0
1    182571003    rs610367    C    T    303.09    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.359;QD=18.94;ReadPosRankSum=-2.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367558    GT:AD:DP:GQ:PL    0/1:5,11:16:99:333,0,164
1    182616136    rs1758779    G    T    238.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.865;QD=17.06;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258302    GT:AD:DP:GQ:PL    0/1:6,8:14:99:269,0,209
1    182640638    rs567397    A    G    36.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258302    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,112
1    182640851    rs569956    T    G    590.91    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=1.399;DB;DP=31;Dels=0.0;FS=8.607;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=19.06;ReadPosRankSum=0.75;SNPEFF_AMINO_ACID_CHANGE=R7;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182640792_182640865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258302    GT:AD:DP:GQ:PL    0/1:12,19:31:99:621,0,335
1    182640864    rs680277    T    C    482    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.259;DB;DP=23;Dels=0.0;FS=10.667;HRun=0;HaplotypeScore=2.4095;MQ=60.0;MQ0=0;MQRankSum=-0.807;QD=20.96;ReadPosRankSum=-1.194;SNPEFF_AMINO_ACID_CHANGE=N3S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182640792_182640865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258302    GT:AD:DP:GQ:PL    0/1:8,15:23:99:512,0,246
1    182640994    rs681081    T    C    172.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=21.53;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258302    GT:AD:DP:GQ:PL    0/1:2,6:8:53.73:202,0,54
1    182641018    rs681111    A    G    125.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=25.02;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258302    GT:AD:DP:GQ:PL    0/1:1,4:5:24.26:155,0,24
1    182772804    rs61010723    A    C    178.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=12.73;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258317    GT:AD:DP:GQ:PL    0/1:8,6:14:99:208,0,254
1    182778367    rs971040    G    A    257.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_AMINO_ACID_CHANGE=R93Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182778320_182778419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367550    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
1    182784022    rs2275171    T    C    301.41    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.022;QD=10.05;ReadPosRankSum=-1.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460690    GT:AD:DP:GQ:PL    0/1:14,16:30:99:331,0,482
1    182794901    rs113382299    G    GT    1378.10    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.063;DB;DP=77;FS=3.987;HRun=2;HaplotypeScore=158.0025;IndelType=I;MQ=59.6;MQ0=0;MQRankSum=1.15;QD=17.9;ReadPosRankSum=0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258317    GT:AD:DP:GQ:PL    0/1:39,38:77:99:1417,0,1140
1    182798081    rs41272518    T    C    684.07    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.33;DB;DP=42;Dels=0.0;FS=5.772;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.038;QD=16.29;ReadPosRankSum=2.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463899    GT:AD:DP:GQ:PL    0/1:20,22:42:99:714,0,522
1    182798924    rs1045971    G    T    80.22    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.24;QD=5.01;ReadPosRankSum=1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258317    GT:AD:DP:GQ:PL    0/1:11,4:16:99:110,0,391
1    182812584    rs6704129    C    T    667.25    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=55;Dels=0.0;FS=2.39;HRun=0;HaplotypeScore=0.7887;MQ=59.58;MQ0=0;MQRankSum=1.314;QD=12.13;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367549    GT:AD:DP:GQ:PL    0/1:31,24:55:99:697,0,864
1    182822367    rs75306569    A    G    356.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-2.001;QD=22.29;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367549    GT:AD:DP:GQ:PL    0/1:4,12:16:99:387,0,114
1    182825748    rs3737219    C    T    498.24    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.223;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6483;MQ=60.0;MQ0=0;MQRankSum=2.258;QD=17.79;ReadPosRankSum=0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479271    GT:AD:DP:GQ:PL    0/1:11,17:28:99:528,0,323
1    182836230    rs74129612    G    T    277.29    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.034;DB;DP=29;Dels=0.0;FS=4.21;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.236;QD=9.56;ReadPosRankSum=-0.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367549    GT:AD:DP:GQ:PL    0/1:18,11:29:99:307,0,662
1    182844020    rs11332    C    T    1191.71    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=12.29;ReadPosRankSum=-0.842;SNPEFF_AMINO_ACID_CHANGE=T582;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182843989_182844089;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367549    GT:AD:DP:GQ:PL    0/1:52,44:97:99:1222,0,1739
1    182845701    rs41312714    G    A    97.54    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=14;Dels=0.0;FS=4.472;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.6;QD=6.97;ReadPosRankSum=0.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399175    GT:AD:DP:GQ:PL    0/1:9,5:14:99:128,0,315
1    182850727    rs6677840    T    C    3525.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=T953;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182850655_182850782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367549    GT:AD:DP:GQ:PL    1/1:0,105:106:99:3525,271,0
1    182854017    rs3130492    G    A    743.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474446    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:776,57,0
1    182856140    rs58683831    CTA    C    292.56    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.665;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=62.902;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=-0.964;QD=14.63;ReadPosRankSum=0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367549    GT:AD:DP:GQ:PL    0/1:12,8:20:99:332,0,672
1    182909262    rs55823015    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHCBP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287709    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    182920712    rs6424877    G    T    289.96    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.076;QD=14.5;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHCBP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287709    GT:AD:DP:GQ:PL    0/1:9,11:20:99:320,0,274
1    182993025    rs10911194    C    T    244.55    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=17;Dels=0.0;FS=2.869;HRun=2;HaplotypeScore=0.0;MQ=58.35;MQ0=0;MQRankSum=0.906;QD=14.39;ReadPosRankSum=-1.133;SNPEFF_AMINO_ACID_CHANGE=A58;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_182992597_182993269;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:6,11:17:99:275,0,141
1    183072590    rs2296288    T    C    552.76    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.984;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.329;QD=12.28;ReadPosRankSum=-0.443;SNPEFF_AMINO_ACID_CHANGE=C182;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183072463_183072767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:23,22:45:99:583,0,824
1    183072786    rs61811798    G    T    40.06    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.35;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.65;QD=2.0;ReadPosRankSum=-1.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:16,4:20:70.05:70,0,473
1    183072908    rs10797835    T    C    52.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=10.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:2,3:5:67.95:83,0,68
1    183077296    rs3835273    A    AG    287.84    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.849;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=47.0227;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=-0.867;QD=14.39;ReadPosRankSum=-0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:12,8:20:99:327,0,397
1    183077615    rs3765521    C    T    286.07    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=16.83;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:8,9:17:99:316,0,233
1    183077618    rs3765522    C    T    292.43    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=17;Dels=0.0;FS=6.864;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.395;QD=17.2;ReadPosRankSum=1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:8,9:17:99:322,0,234
1    183079509    rs2296291    C    T    174.86    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=14.57;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:5,7:12:99:205,0,175
1    183079853    rs6672093    T    C    560.03    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.02;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5773;MQ=59.01;MQ0=0;MQRankSum=0.637;QD=11.92;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484114    GT:AD:DP:GQ:PL    0/1:24,23:47:99:590,0,755
1    183085568    rs6424887    C    T    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
1    183085696    rs6424888    A    G    207.55    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.689;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=1.33;QD=8.3;ReadPosRankSum=1.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:16,9:25:99:238,0,519
1    183085755    rs20563    A    G    273.87    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.359;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.07;MQ0=0;MQRankSum=0.548;QD=8.05;ReadPosRankSum=0.661;SNPEFF_AMINO_ACID_CHANGE=I458V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183085712_183085810;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:24,10:34:99:304,0,841
1    183086190    rs10911253    T    C    86.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=7.87;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479499    GT:AD:DP:GQ:PL    0/1:6,4:11:99:117,0,202
1    183086757    rs2296292    A    C    1322.30    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=85;Dels=0.0;FS=4.224;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=15.56;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=A592;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183086669_183086858;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:37,48:85:99:1352,0,1159
1    183087485    rs10797846    A    T    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479499    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    183087515    rs16860221    A    C    89.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479499    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    183090751    rs2333621    A    G    115.33    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.48;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479499    GT:AD:DP:GQ:PL    0/1:3,4:7:99:145,0,103
1    183093875    rs20557    T    C    707.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.208;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.043;QD=17.68;ReadPosRankSum=2.035;SNPEFF_AMINO_ACID_CHANGE=N837;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183093766_183094011;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:16,24:40:99:737,0,475
1    183094314    rs2093984    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    183094322    rs2093985    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    183094547    rs20558    T    C    401.32    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.964;DB;DP=42;Dels=0.0;FS=2.68;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-1.43;QD=9.56;ReadPosRankSum=0.494;SNPEFF_AMINO_ACID_CHANGE=L888P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183094532_183094685;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:25,17:42:99:431,0,707
1    183095234    rs1886501    A    G    367.85    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=28;Dels=0.0;FS=1.856;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;MQRankSum=-0.995;QD=13.14;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:15,13:28:99:398,0,501
1    183095477    rs2296293    G    A    328.17    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=17;Dels=0.0;FS=2.933;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.02;QD=19.3;ReadPosRankSum=-1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:5,11:17:99:358,0,144
1    183095596    rs2296294    T    C    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
1    183096634    rs1413390    G    A    96.02    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.73;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:7,4:11:99:126,0,258
1    183096668    rs1413389    C    T    67.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.28;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:3,3:6:97.67:98,0,103
1    183096694    rs1413388    T    C    86.17    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=21.54;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:1,3:4:23.21:116,0,23
1    183097956    rs34133998    G    GTTA    329.95    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=55.9083;IndelType=I;MQ=57.05;MQ0=0;MQRankSum=-2.074;QD=23.57;ReadPosRankSum=0.66;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    0/1:8,6:14:99:369,0,311
1    183098001    rs10797851    A    G    153.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=17.06;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:4,5:9:99:184,0,142
1    183099380    rs1360704    T    C    85.47    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.87;MQ0=0;MQRankSum=-1.398;QD=7.77;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:7,4:11:99:115,0,239
1    183099401    rs144561389    A    G    250.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.177;QD=16.69;ReadPosRankSum=1.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:6,9:15:99:280,0,199
1    183099560    rs20559    G    A    521.42    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=1.959;DB;DP=50;Dels=0.0;FS=1.122;HRun=0;HaplotypeScore=1.8874;MQ=58.13;MQ0=0;MQRankSum=-0.859;QD=10.43;ReadPosRankSum=-0.14;SNPEFF_AMINO_ACID_CHANGE=R1121Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183099479_183099684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:31,19:50:99:551,0,889
1    183099701    rs2296300    G    A    130.85    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.03;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5435;MQ=58.39;MQ0=0;MQRankSum=1.004;QD=4.51;ReadPosRankSum=-2.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:20,9:29:99:161,0,620
1    183100555    rs2333620    T    C    511.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.383;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.7751;MQ=54.08;MQ0=0;MQRankSum=-0.076;QD=10.44;ReadPosRankSum=-0.986;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:24,24:49:99:541,0,641
1    183100563    rs55951405    G    GGT    302.54    PASS    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=1.565;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=402.4826;IndelType=I;MQ=51.08;MQ0=0;MQRankSum=-0.522;QD=7.76;ReadPosRankSum=-2.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:32,5:39:2.46:340,0,2
1    183100563    rs4997370    G    T    112.40    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.856;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7751;MQ=53.57;MQ0=0;MQRankSum=1.73;QD=3.31;ReadPosRankSum=-0.856;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:20,14:34:99:142,0,534
1    183101444    rs12071514    A    C    60.21    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9994;MQ=53.52;MQ0=0;MQRankSum=-0.637;QD=4.01;ReadPosRankSum=-1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:8,7:15:90.21:90,0,252
1    183101451    rs12066735    T    G    64.83    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.9857;MQ=52.81;MQ0=0;MQRankSum=-1.905;QD=3.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:9,7:17:94.82:95,0,281
1    183101471    rs12061219    G    A    276.82    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.4;MQ0=0;MQRankSum=-1.615;QD=10.65;ReadPosRankSum=0.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:14,12:26:99:307,0,431
1    183101686    rs12095664    G    A    303.77    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.609;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.519;QD=11.25;ReadPosRankSum=0.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466964    GT:AD:DP:GQ:PL    0/1:16,11:27:99:334,0,519
1    183103551    rs3768616    T    C    31.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.95;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    0/1:2,2:4:61.79:62,0,67
1    183104013    rs2296299    G    A    1141.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.653;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8315;MQ=59.71;MQ0=0;MQRankSum=-0.534;QD=14.27;ReadPosRankSum=1.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1171,0,1260
1    183104340    rs35182436    AT    A    274.73    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.245;DB;DP=34;FS=1.792;HRun=11;HaplotypeScore=106.8482;IndelType=D;MQ=59.45;MQ0=0;MQRankSum=-0.271;QD=8.08;ReadPosRankSum=-0.913;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    0/1:16,18:34:99:314,0,244
1    183104527    rs12026314    T    C    71.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
1    183104552    rs4652779    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    183105324    rs2296297    C    T    39.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:69,0,71
1    183105399    rs2296296    C    G    90.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=7.57;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    0/1:8,4:12:99:121,0,291
1    183105534    rs20560    T    C    796.26    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=68;Dels=0.0;FS=5.105;HRun=0;HaplotypeScore=1.7834;MQ=60.0;MQ0=0;MQRankSum=0.061;QD=11.71;ReadPosRankSum=-0.528;SNPEFF_AMINO_ACID_CHANGE=R1376;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183105521_183105720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:35,33:68:99:826,0,1062
1    183106739    rs10797854    G    A    68.98    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.62;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478064    GT:AD:DP:GQ:PL    0/1:5,3:8:98.98:99,0,170
1    183112041    rs3359    G    C    204.28    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.91;QD=13.62;ReadPosRankSum=0.058;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258341    GT:AD:DP:GQ:PL    0/1:8,7:15:99:234,0,277
1    183176970    rs11480551    G    GTT    1347.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.609;DB;DP=69;FS=0.0;HRun=15;HaplotypeScore=758.778;IndelType=I;MQ=44.73;MQ0=0;MQRankSum=-0.567;QD=19.53;ReadPosRankSum=-2.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264144    GT:AD:DP:GQ:PL    1/1:20,21:69:67.29:1390,67,0
1    183177218    rs647347    A    G    4541.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.853;DB;DP=136;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.4956;MQ=58.63;MQ0=0;MQRankSum=-0.284;QD=33.39;ReadPosRankSum=-0.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264144    GT:AD:DP:GQ:PL    1/1:1,134:136:99:4541,314,0
1    183205523    rs34154823    CAAA    C    74.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.359;DB;DP=17;FS=0.0;HRun=18;HaplotypeScore=116.2837;IndelType=D;MQ=52.81;MQ0=0;MQRankSum=-1.408;QD=4.39;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264144    GT:AD:DP:GQ:PL    1/1:7,5:17:0.85:112,1,0
1    183230516    rs67770192    ATCCGC    A    560.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=57.5516;IndelType=D;MQ=48.72;MQ0=0;QD=62.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMNAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287713    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:602,27,0
1    183486859    rs789169    G    A    1796.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=33.9;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183486823_183486955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SMG7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367537    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1830,135,0
1    183496658    rs2877978    A    G    51.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=5.68;ReadPosRankSum=-1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SMG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444547    GT:AD:DP:GQ:PL    0/1:6,3:9:81.12:81,0,219
1    183516241    rs3768589    C    T    517.23    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.379;DB;DP=47;Dels=0.0;FS=3.13;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.835;QD=11.0;ReadPosRankSum=-0.141;SNPEFF_AMINO_ACID_CHANGE=P870S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183516238_183516387;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SMG7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507469    GT:AD:DP:GQ:PL    0/1:28,19:47:99:547,0,889
1    183525452    rs699244    T    G    373.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469280    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:407,30,0
1    183532200    rs3845461    G    A    56.17    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.55;QD=7.02;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419402    GT:AD:DP:GQ:PL    0/1:5,3:8:86.16:86,0,138
1    183555976    .    C    A    331.89    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DP=28;Dels=0.0;FS=1.882;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.14;QD=11.85;ReadPosRankSum=-2.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367535    GT:AD:DP:GQ:PL    0/1:15,13:28:99:362,0,440
1    183556291    rs789192    A    G    655.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367535    GT:AD:DP:GQ:PL    1/1:0,22:22:54.14:689,54,0
1    183592416    rs2761573    G    T    79.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294742    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
1    183592570    rs17488675    C    T    1018.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=59.23;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294742    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1051,78,0
1    183604905    rs2767305    A    G    663.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294742    GT:AD:DP:GQ:PL    1/1:0,22:22:57.15:697,57,0
1    183616687    rs1174656    G    A    744.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481562    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:778,63,0
1    183616926    rs1174657    T    C    3289.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.74;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=K331E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183615541_183617946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308641    GT:AD:DP:GQ:PL    1/1:0,104:107:99:3290,259,0
1    183617105    rs1174658    A    G    1994.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DB;DP=62;Dels=0.0;FS=4.284;HRun=0;HaplotypeScore=1.9963;MQ=60.0;MQ0=0;MQRankSum=-0.224;QD=32.16;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=F271S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_183615541_183617946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308641    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2027,132,0
1    183775638    rs11579867    A    T    1713.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304685    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1747,132,0
1    183817016    rs3010054    G    A    136.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.259;QD=11.4;ReadPosRankSum=-1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304685    GT:AD:DP:GQ:PL    0/1:6,6:12:99:167,0,204
1    183852914    rs10797919    G    C    502.51    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.446;DB;DP=37;Dels=0.0;FS=3.227;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.656;QD=13.58;ReadPosRankSum=-0.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304685    GT:AD:DP:GQ:PL    0/1:19,18:37:99:533,0,615
1    183857394    rs10911460    A    G    40.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304685    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:71,0,22
1    183867085    rs3814330    C    T    150.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=15.01;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304685    GT:AD:DP:GQ:PL    0/1:5,5:10:99:180,0,121
1    183871637    rs4604659    G    A    321.19    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=4.223;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7356;MQ=59.28;MQ0=0;MQRankSum=-0.409;QD=10.04;ReadPosRankSum=-2.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304685    GT:AD:DP:GQ:PL    0/1:20,12:32:99:351,0,551
1    183873898    rs10797920    A    G    562.14    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9831;MQ=60.0;MQ0=0;MQRankSum=1.112;QD=15.19;ReadPosRankSum=-0.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304685    GT:AD:DP:GQ:PL    0/1:17,20:37:99:592,0,572
1    183881089    rs72733471    A    T    72.14    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=14.43;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304685    GT:AD:DP:GQ:PL    0/1:1,4:5:27.97:102,0,28
1    183886016    rs10797921    A    G    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543395    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
1    183895178    rs4328036    G    A    158.98    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0111;MQ=58.71;MQ0=0;MQRankSum=-1.945;QD=8.83;ReadPosRankSum=-1.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486375    GT:AD:DP:GQ:PL    0/1:11,7:18:99:189,0,188
1    183909530    rs2296711    G    A    40.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.17;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361927    GT:AD:DP:GQ:PL    0/1:3,2:5:70.84:71,0,71
1    183920391    rs2986549    C    T    256.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361927    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:290,21,0
1    183938304    rs4651158    C    A    265.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.9539;MQ=53.04;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361927    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:299,24,0
1    183938313    rs113639370    G    GTT    342.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=11;HaplotypeScore=75.7008;IndelType=I;MQ=57.13;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361927    GT:AD:DP:GQ:PL    1/1:1,8:11:29.58:384,30,0
1    183942950    rs2296714    C    T    577.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361927    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:610,45,0
1    183944089    rs2077202    A    C    373.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361927    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:406,30,0
1    183944444    rs2378795    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361927    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    184023529    rs1046934    A    C    705.22    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.665;DB;DP=52;Dels=0.0;FS=4.125;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=13.56;ReadPosRankSum=-0.085;SNPEFF_AMINO_ACID_CHANGE=Q59H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184023488_184023569;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361641    GT:AD:DP:GQ:PL    0/1:25,27:52:99:735,0,786
1    184476536    rs9633307    T    G    37.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235307    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
1    184476621    rs9633308    T    C    110.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.729;QD=12.25;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235307    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,148
1    184537821    rs10911611    T    C    38.13    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=6.36;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235307    GT:AD:DP:GQ:PL    0/1:1,5:6:32.20:68,0,32
1    184567463    rs10465489    G    T    254.37    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.435;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.847;QD=15.9;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235307    GT:AD:DP:GQ:PL    0/1:7,9:16:99:284,0,243
1    184588710    rs16823344    A    C    839.38    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DB;DP=66;Dels=0.0;FS=3.437;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-1.007;QD=12.72;ReadPosRankSum=-0.879;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235307    GT:AD:DP:GQ:PL    0/1:32,34:66:99:869,0,930
1    184662181    rs1061508    C    T    2130.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.24;MQ0=0;QD=34.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367512    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2164,169,0
1    184663537    rs9425343    A    C    1484.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=I793S;SNPEFF_CODON_CHANGE=aTt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184662957_184663606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367512    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1517,114,0
1    184663581    rs9425634    T    C    1323.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.08;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=Q778;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184662957_184663606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367512    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1357,102,0
1    184663643    rs34236444    TA    T    539.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=7;HaplotypeScore=105.4661;IndelType=D;MQ=61.4;MQ0=0;QD=23.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318130    GT:AD:DP:GQ:PL    1/1:4,19:23:57.12:581,57,0
1    184675814    rs1062994    G    A    969.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.3;SNPEFF_AMINO_ACID_CHANGE=N679;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184675777_184675942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367512    GT:AD:DP:GQ:PL    1/1:0,32:32:81.22:1003,81,0
1    184677464    rs3736757    G    A    1441.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2611;MQ=59.49;MQ0=0;QD=32.04;SNPEFF_AMINO_ACID_CHANGE=I577;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184677287_184677478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367512    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1475,108,0
1    184681081    rs7525074    A    G    198.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=24.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318130    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:231,18,0
1    184681802    rs4651230    T    C    370.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318130    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:404,30,0
1    184695571    rs10752941    C    T    953.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318130    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:987,81,0
1    184706212    rs10711907    GT    G    2204.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=2;HaplotypeScore=161.2699;IndelType=D;MQ=61.11;MQ0=0;QD=38.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318130    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2246,175,0
1    184718750    rs35957626    GAAA    G    203    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DB;DP=16;FS=0.0;HRun=17;HaplotypeScore=93.9876;IndelType=D;MQ=56.25;MQ0=0;MQRankSum=1.393;QD=12.69;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318130    GT:AD:DP:GQ:PL    1/1:6,7:16:25.30:245,25,0
1    184760001    rs570441    T    C    406.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:439,33,0
1    184763999    rs79046430    A    G    104.11    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=11.57;ReadPosRankSum=0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487074    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,184
1    184764067    rs581100    C    G    543.35    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.978;DB;DP=32;Dels=0.0;FS=2.051;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.525;QD=16.98;ReadPosRankSum=-0.136;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487074    GT:AD:DP:GQ:PL    0/1:12,20:32:99:573,0,405
1    184764681    rs35545276    G    A    1227.25    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.891;DB;DP=78;Dels=0.0;FS=1.955;HRun=0;HaplotypeScore=0.9734;MQ=55.08;MQ0=0;MQRankSum=0.851;QD=15.73;ReadPosRankSum=-0.62;SNPEFF_AMINO_ACID_CHANGE=H739;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184760164_184765231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:37,41:78:99:1257,0,1103
1    184764824    rs35704242    C    T    598.86    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DB;DP=41;Dels=0.0;FS=9.282;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.848;QD=14.61;ReadPosRankSum=-1.291;SNPEFF_AMINO_ACID_CHANGE=D692N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184760164_184765231;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:20,21:41:99:629,0,668
1    184765072    rs28927681    A    G    486.14    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.248;DB;DP=41;Dels=0.0;FS=2.82;HRun=1;HaplotypeScore=4.4779;MQ=58.87;MQ0=0;MQRankSum=0.51;QD=11.86;ReadPosRankSum=-0.614;SNPEFF_AMINO_ACID_CHANGE=L609P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184760164_184765231;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:22,19:41:99:516,0,762
1    184765366    rs77377007    C    A    63.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.99;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:4,4:8:93.88:94,0,143
1    184777079    rs338564    G    A    556.05    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=5.226;DB;DP=39;Dels=0.0;FS=3.493;HRun=0;HaplotypeScore=1.9721;MQ=58.81;MQ0=0;MQRankSum=-0.47;QD=14.26;ReadPosRankSum=0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:21,18:39:99:586,0,571
1    184777101    rs338565    G    A    563.31    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.946;DB;DP=52;Dels=0.0;FS=11.684;HRun=0;HaplotypeScore=0.8321;MQ=58.2;MQ0=0;MQRankSum=1.968;QD=10.83;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:29,23:52:99:593,0,817
1    184777177    rs543912    C    A    1818.80    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.109;DB;DP=143;Dels=0.0;FS=1.715;HRun=1;HaplotypeScore=11.1005;MQ=58.86;MQ0=0;MQRankSum=1.081;QD=12.72;ReadPosRankSum=1.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:79,64:143:99:1849,0,2171
1    184777467    rs338566    A    T    36.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
1    184800757    rs484847    T    C    113.67    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.73;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:1,4:5:21.93:144,0,22
1    184801065    rs487675    T    C    1571.92    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.94;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2243;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.38;ReadPosRankSum=-1.554;SNPEFF_AMINO_ACID_CHANGE=Q211;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_184800981_184801096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367511    GT:AD:DP:GQ:PL    0/1:68,59:127:99:1602,0,2231
1    185094277    rs7523448    G    T    463.82    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.881;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.066;QD=15.99;ReadPosRankSum=-0.724;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367504    GT:AD:DP:GQ:PL    0/1:13,16:29:99:494,0,436
1    185114837    rs6684586    G    A    144.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=14.44;ReadPosRankSum=1.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367504    GT:AD:DP:GQ:PL    0/1:4,6:10:99:174,0,130
1    185119794    rs1544051    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=51.77;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367504    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:81,6,0
1    185135745    rs950327    A    G    637.43    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.884;DB;DP=67;Dels=0.0;FS=3.566;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.899;QD=9.51;ReadPosRankSum=-0.459;SNPEFF_AMINO_ACID_CHANGE=S42;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_185135704_185135784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:39,28:67:99:667,0,1080
1    185137460    .    TA    T    375.16    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=4.161;DP=25;FS=1.906;HRun=1;HaplotypeScore=185.5597;IndelType=D;MQ=47.92;MQ0=0;MQRankSum=-3.617;QD=15.01;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:20,5:25:99:414,0,403
1    185137464    .    T    TAA    674.71    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.227;DP=29;FS=1.882;HRun=1;HaplotypeScore=189.777;IndelType=I;MQ=50.66;MQ0=0;MQRankSum=-3.178;QD=23.27;ReadPosRankSum=-0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:16,11:29:99:714,0,503
1    185137628    rs10797999    C    T    327.01    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.086;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=48.24;MQ0=0;MQRankSum=-1.48;QD=25.15;ReadPosRankSum=-2.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:2,11:13:46.53:357,0,47
1    185143721    rs10489579    A    G    643.73    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.483;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.803;QD=14.63;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=I148V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_185143504_185144245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:20,24:44:99:674,0,642
1    185144347    rs6696591    T    G    39.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.08;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450350    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:70,6,0
1    185153545    rs76544683    G    GT    441.43    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.994;DB;DP=28;FS=3.68;HRun=1;HaplotypeScore=57.1243;IndelType=I;MQ=60.39;MQ0=0;MQRankSum=1.137;QD=15.77;ReadPosRankSum=1.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:16,12:28:99:480,0,571
1    185171869    rs6698109    A    G    1049.47    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=75;Dels=0.0;FS=1.962;HRun=0;HaplotypeScore=0.8941;MQ=59.07;MQ0=0;MQRankSum=-1.154;QD=13.99;ReadPosRankSum=-2.181;SNPEFF_AMINO_ACID_CHANGE=H536R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_185171786_185171931;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:36,39:75:99:1079,0,1207
1    185176015    rs2146328    A    G    82.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.45;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:112,0,65
1    185201061    rs12096987    T    C    41.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
1    185240474    rs12041704    A    G    714.58    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.374;DB;DP=52;Dels=0.0;FS=2.443;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.842;QD=13.74;ReadPosRankSum=-0.092;SNPEFF_AMINO_ACID_CHANGE=N821D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_185240455_185240521;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:27,25:52:99:745,0,844
1    185259731    rs2378909    A    G    248.33    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.479;QD=20.69;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367500    GT:AD:DP:GQ:PL    0/1:3,9:12:91.12:278,0,91
1    185267114    rs10174    A    G    1899.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IVNS1ABP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468217    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1933,141,0
1    185269916    rs10798006    T    C    139.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IVNS1ABP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367498    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:172,15,0
1    185833565    rs7556537    A    C    1130.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1164,84,0
1    185834847    rs34137386    GTTTC    G    681.17    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.295;DB;DP=39;FS=1.438;HRun=0;HaplotypeScore=294.982;IndelType=D;MQ=52.62;MQ0=0;MQRankSum=1.608;QD=17.47;ReadPosRankSum=3.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    0/1:22,13:39:99:720,0,1000
1    185834851    rs57584779    C    CT    299.20    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.095;DB;DP=38;FS=0.0;HRun=13;HaplotypeScore=284.4198;IndelType=I;MQ=52.41;MQ0=0;MQRankSum=-1.397;QD=7.87;ReadPosRankSum=-2.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    0/1:24,13:38:29.06:338,0,29
1    185891409    rs55890842    G    A    880.80    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=2.809;DB;DP=53;Dels=0.0;FS=2.826;HRun=1;HaplotypeScore=0.9159;MQ=58.85;MQ0=0;MQRankSum=-0.045;QD=16.62;ReadPosRankSum=1.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    0/1:23,30:53:99:911,0,652
1    185987152    rs10911798    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    185988567    rs74625641    CT    C    352.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=11;HaplotypeScore=47.3281;IndelType=D;MQ=61.26;MQ0=0;QD=20.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:1,16:17:47.94:394,48,0
1    186022032    rs10911808    T    G    2439.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2472,184,0
1    186026474    rs12129650    T    C    2043.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.61;MQ0=0;QD=34.64;SNPEFF_AMINO_ACID_CHANGE=I2418T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_186026366_186026533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,58:59:99:2077,153,0
1    186030902    rs10737266    G    T    252.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
1    186031041    rs7522627    C    T    1290.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=59.45;MQ0=0;MQRankSum=-1.155;QD=30.73;ReadPosRankSum=-0.825;SNPEFF_AMINO_ACID_CHANGE=C2457;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_186030983_186031096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:1,41:42:67.52:1324,68,0
1    186039006    rs761905    C    T    336.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:369,30,0
1    186040062    rs10911811    G    C    33.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:65,6,0
1    186044237    rs975398    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    186050417    rs10798035    A    G    4398.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.51;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=E2893G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_186050339_186050526;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4398,328,0
1    186055371    rs6425017    A    G    1973.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:1,55:56:99:2007,144,0
1    186057181    rs10911816    T    C    977.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1010,78,0
1    186064760    rs1022671    A    T    354.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,15:15:36.09:387,36,0
1    186064781    rs2180480    A    T    155.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:188,15,0
1    186077463    rs1555495    A    G    38.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.4;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    0/1:4,2:6:68.41:68,0,106
1    186081918    rs7555520    C    T    1006.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.28;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6647;MQ=59.25;MQ0=0;MQRankSum=-0.056;QD=32.48;ReadPosRankSum=-0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:1,30:31:47.96:1040,48,0
1    186082316    rs7555906    C    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    186086578    rs10157742    G    A    1386.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.44;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1419,105,0
1    186089072    rs2891230    G    A    2148.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2181,163,0
1    186089112    rs2383434    T    C    1692.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9664;MQ=60.0;MQ0=0;QD=23.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,71:71:99:1725,168,0
1    186089363    rs10752962    C    A    424.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:457,36,0
1    186092076    rs2057388    A    C    1727.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1760,126,0
1    186092540    rs6698064    A    G    42.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    186113852    rs17531405    G    C    510.08    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-1.099;QD=13.08;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    0/1:23,16:39:99:540,0,784
1    186113931    rs3737941    T    G    141.05    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=17.63;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    0/1:3,5:8:99:171,0,101
1    186135236    rs6425021    G    A    489.55    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=2.322;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.069;QD=22.25;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    0/1:6,16:22:99:520,0,185
1    186141301    rs4651302    G    A    1685.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475585    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1719,126,0
1    186151493    rs16825040    C    G    187.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=14;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=13.37;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271588    GT:AD:DP:GQ:PL    0/1:7,7:14:99:217,0,210
1    186265948    rs1293987    T    A    535.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    1/1:0,18:18:42.12:568,42,0
1    186274133    rs6425024    C    T    170.35    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.66;MQ0=0;MQRankSum=-0.898;QD=17.04;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    0/1:2,8:10:56.37:200,0,56
1    186274157    rs6425025    G    T    98.34    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=16.39;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:128,0,27
1    186274159    rs2273778    G    A    97.43    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=16.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    0/1:1,5:6:26.19:127,0,26
1    186274175    rs2273777    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    186275760    rs16825150    G    A    2545.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=172;DS;Dels=0.0;FS=3.024;HRun=2;HaplotypeScore=3.8927;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=14.8;ReadPosRankSum=-0.698;SNPEFF_AMINO_ACID_CHANGE=K169;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_186275450_186277814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    0/1:86,86:172:99:2575,0,2820
1    186276282    .    CACT    C    188.10    QDFilter2    AB=0.941;AC=1;AF=0.50;AN=2;BaseQRankSum=3.848;DP=95;FS=17.064;HRun=0;HaplotypeScore=832.2265;IndelType=D;MQ=39.73;MQ0=0;MQRankSum=-2.895;QD=1.98;ReadPosRankSum=-0.945;SNPEFF_AMINO_ACID_CHANGE=T344-;SNPEFF_CODON_CHANGE=act/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_1_186275450_186277814;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    0/1:89,6:95:99:227,0,3952
1    186276291    rs151267614    A    G    116.98    HaplotypeScoreFilter13;QDFilter2    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.931;DB;DP=96;Dels=0.01;FS=39.521;HRun=1;HaplotypeScore=52.0283;MQ=40.25;MQ0=0;MQRankSum=-4.679;QD=1.21;ReadPosRankSum=-0.455;SNPEFF_AMINO_ACID_CHANGE=K346;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_186275450_186277814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    0/1:61,34:96:99:147,0,1196
1    186277088    rs68069719    G    C    5964.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6178;MQ=55.98;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=C612S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_186275450_186277814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367482    GT:AD:DP:GQ:PL    1/1:0,177:177:99:5964,454,0
1    186286782    rs34585917    A    G    131.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.234;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=7.32;ReadPosRankSum=0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367483    GT:AD:DP:GQ:PL    0/1:12,6:18:99:162,0,398
1    186295021    rs76057663    A    G    721.27    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.902;QD=16.77;ReadPosRankSum=1.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367478    GT:AD:DP:GQ:PL    0/1:18,25:43:99:751,0,569
1    186305993    rs16825183    T    C    311.02    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.335;QD=11.96;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481347    GT:AD:DP:GQ:PL    0/1:15,11:26:99:341,0,538
1    186307064    rs16825185    T    G    162.11    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.656;QD=12.47;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481347    GT:AD:DP:GQ:PL    0/1:6,7:13:99:192,0,202
1    186313249    rs2950829    A    G    719.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367478    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:752,54,0
1    186313293    rs76557279    G    A    50.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=4.55;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367478    GT:AD:DP:GQ:PL    0/1:7,4:11:80.04:80,0,258
1    186313830    rs16825201    A    G    79.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.988;QD=13.18;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367478    GT:AD:DP:GQ:PL    0/1:3,3:6:61.94:109,0,62
1    186314949    rs2272412    C    T    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367478    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
1    186316488    rs3753565    C    T    1539.67    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.473;DB;DP=117;Dels=0.0;FS=1.494;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.315;QD=13.16;ReadPosRankSum=0.927;SNPEFF_AMINO_ACID_CHANGE=S960N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_186316424_186316590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367478    GT:AD:DP:GQ:PL    0/1:63,54:117:99:1570,0,1863
1    186319580    rs6667940    C    A    542.01    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=27.1;ReadPosRankSum=0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469463    GT:AD:DP:GQ:PL    0/1:4,16:20:99:572,0,107
1    186327536    rs2383476    G    A    102.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.15;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367472    GT:AD:DP:GQ:PL    0/1:2,4:6:58.32:133,0,58
1    186329257    rs878041    C    A    358.14    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7317;MQ=58.63;MQ0=0;MQRankSum=0.352;QD=21.07;ReadPosRankSum=-0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367472    GT:AD:DP:GQ:PL    0/1:6,11:17:99:388,0,198
1    186329869    rs2026187    C    G    762.48    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=59;Dels=0.0;FS=5.779;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.099;QD=12.92;ReadPosRankSum=-1.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367472    GT:AD:DP:GQ:PL    0/1:31,28:59:99:792,0,912
1    186330643    rs10494586    T    C    128.89    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=8.06;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367472    GT:AD:DP:GQ:PL    0/1:11,5:16:99:159,0,409
1    186330700    rs36117514    A    AG    320.01    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.17;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=68.9879;IndelType=I;MQ=58.93;MQ0=0;MQRankSum=1.077;QD=13.91;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367472    GT:AD:DP:GQ:PL    0/1:12,11:23:99:359,0,392
1    186342323    rs7514615    C    G    36.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451586    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
1    186343759    rs2297226    G    A    71.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.84;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367472    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:101,0,27
1    186357523    rs1290390    T    C    680.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287859    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:713,51,0
1    186862419    rs7519192    A    G    216.37    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.339;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.027;QD=14.42;ReadPosRankSum=-2.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    0/1:8,7:15:99:246,0,224
1    186863385    rs71952080    TAA    T    185.36    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.663;DB;DP=18;FS=0.0;HRun=3;HaplotypeScore=56.1648;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=-0.754;QD=10.3;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    0/1:12,6:18:99:224,0,587
1    186908385    rs2307200    C    T    129.07    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.873;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.493;QD=7.17;ReadPosRankSum=0.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466600    GT:AD:DP:GQ:PL    0/1:13,5:18:99:159,0,417
1    186915684    rs61811026    C    T    398.50    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.009;QD=22.14;ReadPosRankSum=-0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    0/1:4,14:18:99:428,0,120
1    186919634    rs12720639    C    G    136.57    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=12.42;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    0/1:6,5:11:99:167,0,218
1    186919675    rs12691467    A    G    258.54    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.727;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=17.24;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    0/1:7,8:15:99:289,0,235
1    186919732    rs4650709    A    T    1065.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1099,90,0
1    186919993    rs969357    G    A    256.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
1    186925094    rs5007826    A    G    103.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.3;MQ0=0;QD=17.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:136,12,0
1    186925168    rs5007825    A    G    149.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:183,15,0
1    186925194    rs5007824    T    C    613.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.03;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    1/1:0,18:18:51.12:647,51,0
1    186925552    rs2307199    T    C    1814.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.09;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1848,141,0
1    186925636    rs7547623    T    G    245.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    1/1:0,11:11:24.06:278,24,0
1    186934871    rs74426065    G    A    255.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367466    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
1    186946912    rs2307198    G    A    1539.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=R591K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_186946725_186946920;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442353    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1572,123,0
1    190233950    rs113294164    A    C    281.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=14.06;ReadPosRankSum=-1.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367462    GT:AD:DP:GQ:PL    0/1:10,10:20:99:311,0,289
1    192128011    .    GA    G    114.16    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DP=17;FS=0.0;HRun=9;HaplotypeScore=39.9233;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=6.72;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367460    GT:AD:DP:GQ:PL    0/1:10,7:17:99:153,0,169
1    192129370    rs4329489    G    A    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367460    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
1    192316660    rs192525170    C    A    56.16    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.895;QD=5.62;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417209    GT:AD:DP:GQ:PL    0/1:7,3:10:86.15:86,0,214
1    192335271    rs113986528    C    CTAAT    921.96    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.0;DB;DP=23;FS=1.804;HRun=0;HaplotypeScore=76.789;IndelType=I;MQ=59.88;MQ0=0;MQRankSum=0.651;QD=40.09;ReadPosRankSum=-0.031;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417209    GT:AD:DP:GQ:PL    0/1:11,12:23:99:961,0,474
1    192460260    .    A    ATG    446.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.29;DP=16;FS=0.0;HRun=0;HaplotypeScore=58.3204;IndelType=I;MQ=60.59;MQ0=0;MQRankSum=1.448;QD=27.92;ReadPosRankSum=1.159;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL136987.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408218    GT:AD:DP:GQ:PL    1/1:5,11:16:27.08:489,27,0
1    192460544    rs1175055    G    C    372.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL136987.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408218    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:406,30,0
1    192545110    rs80272816    T    C    365.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=14.06;ReadPosRankSum=0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367459    GT:AD:DP:GQ:PL    0/1:13,13:26:99:396,0,392
1    192779227    rs2746073    T    A    300.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235382    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:334,27,0
1    192780088    rs5779653    GCT    G    3927.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;FS=0.0;HRun=0;HaplotypeScore=329.962;IndelType=D;MQ=59.77;MQ0=2;QD=39.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483295    GT:AD:DP:GQ:PL    1/1:2,97:97:99:3928,283,0
1    192780337    rs10598428    CAA    C    2707.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=3;HaplotypeScore=218.2628;IndelType=D;MQ=60.13;MQ0=0;QD=43.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483295    GT:AD:DP:GQ:PL    1/1:2,60:62:99:2749,181,0
1    192991921    rs11385250    G    GT    213.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=61.4137;IndelType=I;MQ=47.12;MQ0=0;QD=35.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421683    GT:AD:DP:GQ:PL    1/1:1,5:6:18.01:256,18,0
1    192997336    rs41306225    A    C    501.36    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.794;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8911;MQ=58.59;MQ0=0;MQRankSum=-0.604;QD=15.19;ReadPosRankSum=0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367448    GT:AD:DP:GQ:PL    0/1:16,17:33:99:531,0,511
1    193053675    rs56055376    T    C    404.14    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.713;QD=17.57;ReadPosRankSum=0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TROVE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367441    GT:AD:DP:GQ:PL    0/1:10,13:23:99:434,0,306
1    193053762    rs12531    C    T    427.85    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.107;DB;DP=33;Dels=0.0;FS=1.377;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=12.97;ReadPosRankSum=-1.891;SNPEFF_AMINO_ACID_CHANGE=F231;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_193053709_193053861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TROVE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416058    GT:AD:DP:GQ:PL    0/1:16,17:33:99:458,0,524
1    193053996    .    GA    G    208.98    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DP=19;FS=5.563;HRun=12;HaplotypeScore=49.114;IndelType=D;MQ=60.57;MQ0=0;MQRankSum=0.394;QD=11.0;ReadPosRankSum=1.084;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TROVE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367441    GT:AD:DP:GQ:PL    0/1:6,13:19:97.01:248,0,97
1    193067020    rs35057393    T    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367439    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    193117124    rs138541554    A    T    302.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.224;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=11.62;ReadPosRankSum=-1.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367435    GT:AD:DP:GQ:PL    0/1:13,13:26:99:332,0,433
1    193181412    rs41308389    T    G    347.12    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.376;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2426;MQ=58.64;MQ0=0;MQRankSum=-0.178;QD=11.2;ReadPosRankSum=-1.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367435    GT:AD:DP:GQ:PL    0/1:15,16:31:99:377,0,524
1    193181751    rs115158706    A    T    251.31    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.906;QD=13.96;ReadPosRankSum=0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367435    GT:AD:DP:GQ:PL    0/1:7,11:18:99:281,0,237
1    193205272    rs3738244    T    A    589.45    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.083;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=18.42;ReadPosRankSum=1.538;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445394    GT:AD:DP:GQ:PL    0/1:14,18:32:99:619,0,478
1    193218793    rs41305084    T    G    138.12    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.051;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.973;QD=6.58;ReadPosRankSum=0.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367435    GT:AD:DP:GQ:PL    0/1:15,6:21:99:168,0,518
1    196227526    rs977157    A    G    1216.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=D1003;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196227324_196227624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294725    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1249,93,0
1    196251522    rs2477357    T    C    1412.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294725    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1445,105,0
1    196254970    rs2477360    C    T    796.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294725    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:830,60,0
1    196398619    rs1538684    T    C    65.85    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=6.58;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294725    GT:AD:DP:GQ:PL    0/1:7,3:10:95.84:96,0,257
1    196398974    rs12121250    T    A    34.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294725    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:64,0,72
1    196461513    rs4607811    C    T    593.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294725    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:627,45,0
1    196642072    rs551397    C    T    302.46    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.805;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.122;QD=17.79;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359637    GT:AD:DP:GQ:PL    0/1:7,10:17:99:332,0,204
1    196642233    rs800292    G    A    447.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.592;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9995;MQ=59.06;MQ0=0;MQRankSum=-1.09;QD=11.19;ReadPosRankSum=1.313;SNPEFF_AMINO_ACID_CHANGE=V62I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196642108_196642293;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359637    GT:AD:DP:GQ:PL    0/1:25,15:40:99:477,0,771
1    196642969    rs35507625    C    CTT    695.76    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.113;DB;DP=52;FS=11.452;HRun=9;HaplotypeScore=157.3124;IndelType=I;MQ=58.0;MQ0=2;MQRankSum=-1.141;QD=12.88;ReadPosRankSum=-0.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496761    GT:AD:DP:GQ:PL    0/1:33,19:52:99:735,0,692
1    196654324    rs1061147    A    C    4306.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=A243;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196654194_196654367;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359637    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4307,343,0
1    196658497    rs482934    G    T    774.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359637    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:808,60,0
1    196658905    rs12029785    G    A    83.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359637    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    196659237    rs1061170    C    T    1644.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.25;SNPEFF_AMINO_ACID_CHANGE=H338Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196659193_196659369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359637    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1678,123,0
1    196659753    rs34331968    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391986    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    196682947    rs2274700    G    A    1507.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=A473;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196682865_196683047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367429    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1540,117,0
1    196684625    rs203674    G    T    721.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367429    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:754,57,0
1    196705926    rs375046    C    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367429    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    196712577    rs513699    T    C    108.93    QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=59;Dels=0.0;FS=1.771;HRun=0;HaplotypeScore=2.0756;MQ=53.52;MQ0=1;MQRankSum=-5.295;QD=1.85;ReadPosRankSum=1.497;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470918    GT:AD:DP:GQ:PL    0/1:46,13:59:99:139,0,1574
1    196712586    rs61822181    C    T    160.40    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=74;Dels=0.0;FS=3.079;HRun=1;HaplotypeScore=1.4105;MQ=54.35;MQ0=1;MQRankSum=-5.168;QD=2.17;ReadPosRankSum=1.369;SNPEFF_AMINO_ACID_CHANGE=T1046;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196712582_196712758;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367429    GT:AD:DP:GQ:PL    0/1:56,18:74:99:190,0,1862
1    196757258    rs400642    C    T    361.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.07;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367425    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
1    196757392    rs400344    C    T    1058.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.13;MQ0=7;QD=25.21;SNPEFF_AMINO_ACID_CHANGE=S159;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196757346_196757528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367425    GT:AD:DP:GQ:PL    1/1:0,42:42:87.24:1092,87,0
1    196794519    rs442759    C    T    172.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472961    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
1    196794909    rs409549    G    C    248.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472961    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
1    196795849    rs424722    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468079    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    196796184    rs399507    G    A    483.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.72;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468079    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:516,39,0
1    196796240    rs438781    T    A    171.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468079    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
1    196797123    rs677961    C    T    283.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.31;MQ0=2;QD=28.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468079    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:317,24,0
1    196797238    rs425757    C    T    156.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.88;MQ0=1;QD=22.35;SNPEFF_AMINO_ACID_CHANGE=H157Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196797200_196797376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320493    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:189,15,0
1    196797244    rs113811987    C    G    157.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.88;MQ0=1;QD=22.56;SNPEFF_AMINO_ACID_CHANGE=L159V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196797200_196797376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320493    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:191,15,0
1    196797357    rs3201739    A    G    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.68;MQ0=2;QD=16.87;SNPEFF_AMINO_ACID_CHANGE=T196;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196797200_196797376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320493    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:134,12,0
1    196797493    rs28369298    T    C    48.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.21;MQ0=1;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468079    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
1    196801042    rs4230    G    T    891.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=47.81;MQ0=2;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=R243;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196800927_196801319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367424    GT:AD:DP:GQ:PL    1/1:2,24:26:72.22:924,72,0
1    196801078    rs414628    A    T    726.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.25;MQ0=2;QD=27.94;SNPEFF_AMINO_ACID_CHANGE=R255;SNPEFF_CODON_CHANGE=cgA/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196800927_196801319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367424    GT:AD:DP:GQ:PL    1/1:2,24:26:60.16:759,60,0
1    196801190    rs390679    C    A    172.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480960    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
1    196874356    rs10801578    G    T    5055.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9066;MQ=59.7;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=E124D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196874238_196874420;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367416    GT:AD:DP:GQ:PL    1/1:0,157:158:99:5055,379,0
1    196876458    rs7417769    A    G    1667.87    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.605;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.669;QD=14.38;ReadPosRankSum=-2.129;SNPEFF_AMINO_ACID_CHANGE=N209S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196876446_196876628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367416    GT:AD:DP:GQ:PL    0/1:50,66:116:99:1698,0,1497
1    196883940    rs35868341    TA    T    34.18    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=11;FS=0.0;HRun=14;HaplotypeScore=79.4356;IndelType=D;MQ=42.34;MQ0=0;MQRankSum=-1.268;QD=3.11;ReadPosRankSum=1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367421    GT:AD:DP:GQ:PL    0/1:3,6:11:73.21:73,0,82
1    196887181    rs1971579    T    G    86.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367421    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    196887274    rs3795341    G    A    205.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=14.71;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367421    GT:AD:DP:GQ:PL    0/1:7,7:14:99:236,0,248
1    196920148    rs4085749    C    T    550.93    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9385;MQ=59.5;MQ0=0;MQRankSum=0.233;QD=11.98;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=C140;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_196919982_196920158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367415    GT:AD:DP:GQ:PL    0/1:26,20:46:99:581,0,896
1    196920178    rs3828032    C    T    582.65    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.038;DB;DP=34;Dels=0.0;FS=6.12;HRun=1;HaplotypeScore=0.9967;MQ=59.32;MQ0=0;MQRankSum=0.055;QD=17.14;ReadPosRankSum=0.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485647    GT:AD:DP:GQ:PL    0/1:14,19:34:99:613,0,432
1    196926956    rs3748556    C    T    632.54    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.387;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.089;QD=13.75;ReadPosRankSum=-1.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367415    GT:AD:DP:GQ:PL    0/1:24,22:46:99:663,0,870
1    196926973    rs3748555    C    A    573.72    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.55;MQ0=0;MQRankSum=-0.479;QD=11.25;ReadPosRankSum=-1.476;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367415    GT:AD:DP:GQ:PL    0/1:28,23:51:99:604,0,921
1    196946869    rs3748557    T    A    2438.43    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.252;DB;DP=176;Dels=0.0;FS=4.679;HRun=1;HaplotypeScore=5.1895;MQ=60.0;MQ0=0;MQRankSum=0.833;QD=13.78;ReadPosRankSum=-0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256785    GT:AD:DP:GQ:PL    0/1:89,87:176:99:2468,0,2730
1    196947030    rs12755054    T    C    139.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=9.29;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256785    GT:AD:DP:GQ:PL    0/1:9,6:15:99:169,0,328
1    196952268    rs45489701    C    T    638.44    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.972;DB;DP=39;Dels=0.0;FS=3.05;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.944;QD=16.37;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256785    GT:AD:DP:GQ:PL    0/1:18,21:39:99:668,0,489
1    196967458    rs1332664    G    T    311.35    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=29;Dels=0.0;FS=1.664;HRun=4;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.982;QD=10.74;ReadPosRankSum=0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256785    GT:AD:DP:GQ:PL    0/1:15,14:29:99:341,0,546
1    197008365    rs698859    C    T    511.65    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.622;QD=15.5;ReadPosRankSum=-0.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490002    GT:AD:DP:GQ:PL    0/1:16,17:33:99:542,0,543
1    197008597    rs5990    A    C    1951.10    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.363;DB;DP=135;Dels=0.0;FS=4.007;HRun=0;HaplotypeScore=1.7608;MQ=59.66;MQ0=0;MQRankSum=0.156;QD=14.45;ReadPosRankSum=-0.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490002    GT:AD:DP:GQ:PL    0/1:69,66:135:99:1981,0,2309
1    197009508    rs12134960    G    C    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000490002    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    197009798    rs5998    A    G    795.83    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.6;MQ0=0;MQRankSum=1.99;QD=15.92;ReadPosRankSum=-0.806;SNPEFF_AMINO_ACID_CHANGE=N602;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197009652_197009865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367412    GT:AD:DP:GQ:PL    0/1:24,26:50:99:826,0,738
1    197022093    rs17514317    TCTCA    T    385.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=45.4214;IndelType=D;MQ=56.88;MQ0=0;QD=48.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367412    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:428,24,0
1    197026672    rs1759009    A    G    258.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367412    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
1    197029345    rs1332661    G    A    67.22    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.4;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367412    GT:AD:DP:GQ:PL    0/1:5,3:8:97.22:97,0,186
1    197030201    rs5997    T    C    786    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.43;MQ0=0;QD=31.44;SNPEFF_AMINO_ACID_CHANGE=T152;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197030029_197030205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367412    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:819,69,0
1    197030829    rs5993    A    T    205.30    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=18.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367412    GT:AD:DP:GQ:PL    0/1:4,7:11:99:235,0,132
1    197031021    rs6003    C    T    1477.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.88;SNPEFF_AMINO_ACID_CHANGE=R115H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197030914_197031099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367412    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1510,111,0
1    197032345    rs5996    C    G    173.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=14.44;ReadPosRankSum=-2.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367412    GT:AD:DP:GQ:PL    0/1:4,8:12:99:203,0,140
1    197053373    rs12677    G    A    614.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367406    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:647,48,0
1    197053561    .    T    TA    92.74    PASS    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DP=37;FS=8.822;HRun=15;HaplotypeScore=146.9237;IndelType=I;MQ=59.67;MQ0=0;MQRankSum=0.543;QD=2.51;ReadPosRankSum=-0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367406    GT:AD:DP:GQ:PL    0/1:26,8:37:99:132,0,137
1    197055782    rs10733087    T    C    505.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367406    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:538,42,0
1    197055925    rs10754213    T    C    3924.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367406    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3925,283,0
1    197059878    rs4915315    G    A    584.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:617,48,0
1    197059892    rs10754214    A    G    700.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=30.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:734,57,0
1    197059928    rs4915316    A    G    1120.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=37.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,30:30:87.26:1153,87,0
1    197063352    rs41304071    C    T    93.92    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=7.83;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    0/1:7,5:12:99:124,0,236
1    197070442    rs3762271    G    T    536.23    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.99;DB;DP=37;Dels=0.0;FS=1.271;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.295;QD=14.49;ReadPosRankSum=0.442;SNPEFF_AMINO_ACID_CHANGE=L2647I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    0/1:17,20:37:99:566,0,564
1    197070521    rs12138336    C    G    529.66    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.343;DB;DP=33;Dels=0.0;FS=1.397;HRun=0;HaplotypeScore=1.6647;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=16.05;ReadPosRankSum=-0.537;SNPEFF_AMINO_ACID_CHANGE=Q2620H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    0/1:13,20:33:99:560,0,414
1    197070697    rs41310927    T    C    665.73    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.176;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.477;QD=9.94;ReadPosRankSum=-0.718;SNPEFF_AMINO_ACID_CHANGE=S2562G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    0/1:39,28:67:99:696,0,1380
1    197070707    rs41308365    G    A    763.54    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=2.59;DB;DP=64;Dels=0.0;FS=1.021;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=11.93;ReadPosRankSum=-0.342;SNPEFF_AMINO_ACID_CHANGE=I2558;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    0/1:38,26:64:99:794,0,1143
1    197070776    rs10922162    C    T    1263.28    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=81;Dels=0.0;FS=2.996;HRun=0;HaplotypeScore=0.5784;MQ=59.72;MQ0=0;MQRankSum=-0.111;QD=15.6;ReadPosRankSum=-0.429;SNPEFF_AMINO_ACID_CHANGE=V2535;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    0/1:39,42:81:99:1293,0,1131
1    197070815    rs1412640    T    C    3063.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=L2522;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3097,229,0
1    197070901    rs964201    A    G    2627.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=Y2494H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2661,193,0
1    197072420    rs41310925    T    C    1487.61    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=116;Dels=0.0;FS=2.433;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=1.001;QD=12.82;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=Q1987;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    0/1:65,50:116:99:1518,0,2132
1    197073932    rs2878749    T    C    744.08    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.148;DB;DP=57;Dels=0.0;FS=9.23;HRun=0;HaplotypeScore=1.581;MQ=60.0;MQ0=0;MQRankSum=0.738;QD=13.05;ReadPosRankSum=-0.803;SNPEFF_AMINO_ACID_CHANGE=K1483;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197069561_197074315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367409    GT:AD:DP:GQ:PL    0/1:28,29:57:99:774,0,954
1    197086669    rs10754215    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    197091537    rs4915337    A    T    1072.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=S1193;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197091518_197091725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,33:33:81.27:1106,81,0
1    197093098    rs6685259    A    T    130.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
1    197093832    rs4915338    T    C    79.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=9.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:111,9,0
1    197097473    rs68161328    G    GA    106.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;FS=0.0;HRun=15;HaplotypeScore=72.4802;IndelType=I;MQ=56.38;MQ0=0;MQRankSum=-1.214;QD=10.66;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    0/1:5,5:10:19.57:146,0,20
1    197098143    rs6695300    G    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    197101303    rs3737110    C    A    71.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.28;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,148
1    197101621    rs3737111    T    C    80.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    0/1:2,4:6:65.60:111,0,66
1    197102745    rs4915344    A    G    411.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.757;DB;DP=34;Dels=0.0;FS=3.581;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=12.1;ReadPosRankSum=-0.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    0/1:17,17:34:99:441,0,588
1    197102839    rs4915345    A    C    393.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:426,33,0
1    197104149    rs35659894    TA    T    144.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=3;HaplotypeScore=12.069;IndelType=D;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
1    197108693    rs10737687    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    197109042    rs1332663    C    T    1461.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.38;MQ0=0;QD=39.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1494,111,0
1    197112533    rs6677082    G    A    3274.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=S283;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197111461_197112940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3275,238,0
1    197113073    rs1571964    G    A    1185.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294732    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1218,99,0
1    197128726    rs12128631    G    A    1034.94    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.203;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8592;MQ=59.55;MQ0=0;MQRankSum=0.274;QD=20.29;ReadPosRankSum=0.903;SNPEFF_AMINO_ACID_CHANGE=L831;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197128455_197129144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBTB41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367405    GT:AD:DP:GQ:PL    0/1:16,35:51:99:1065,0,524
1    197141243    rs6428389    A    C    205.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBTB41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367405    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:239,18,0
1    197141253    rs10429910    A    C    37.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=5.31;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBTB41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367405    GT:AD:DP:GQ:PL    0/1:4,3:7:67.18:67,0,144
1    197144383    rs10801593    T    G    77.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBTB41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367405    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
1    197147471    rs61819118    A    C    210.11    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=2.067;QD=14.01;ReadPosRankSum=-1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBTB41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367405    GT:AD:DP:GQ:PL    0/1:7,8:15:99:240,0,237
1    197297408    rs550098    A    G    79.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367399    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:112,9,0
1    197297540    rs12042179    A    T    283.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.51;DB;DP=30;Dels=0.03;FS=4.091;HRun=5;HaplotypeScore=2.7953;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=9.15;ReadPosRankSum=2.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367399    GT:AD:DP:GQ:PL    0/1:15,15:30:99:314,0,542
1    197313189    rs949571    C    T    92.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367399    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    197316239    rs1337168    C    G    48.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367399    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    197316435    rs1337167    T    C    2306.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.933;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.66;MQ0=0;MQRankSum=-0.986;QD=34.42;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367399    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2339,135,0
1    197325908    rs2786098    T    G    481.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367399    GT:AD:DP:GQ:PL    1/1:0,17:17:45.10:514,45,0
1    197390368    rs3902057    A    G    1792.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=L119;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197390130_197391086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367401    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1826,135,0
1    197407942    rs980371    A    G    422.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367399    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:455,33,0
1    197446702    rs1135810    G    T    944.51    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.091;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6803;MQ=60.0;MQ0=0;MQRankSum=0.148;QD=11.52;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367399    GT:AD:DP:GQ:PL    0/1:47,35:82:99:975,0,1475
1    197480927    rs12142127    C    T    317.80    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=1.145;DB;DP=49;Dels=0.0;FS=1.179;HRun=1;HaplotypeScore=0.9469;MQ=59.53;MQ0=0;MQRankSum=-0.074;QD=6.49;ReadPosRankSum=-0.725;SNPEFF_AMINO_ACID_CHANGE=Q222;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197480858_197481074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391979    GT:AD:DP:GQ:PL    0/1:32,17:49:99:348,0,1115
1    197482167    rs2013617    C    G    358.46    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.134;QD=27.57;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391979    GT:AD:DP:GQ:PL    0/1:1,12:13:8.12:388,0,8
1    197510025    rs3902061    G    T    1189.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463124    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1223,93,0
1    197510299    rs3850628    G    A    240.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463124    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
1    197515715    rs4303099    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391979    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    197515777    rs4316386    A    T    402.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391979    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:436,33,0
1    197515981    rs10922249    T    C    274    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.318;DB;DP=26;Dels=0.0;FS=2.764;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.755;QD=10.54;ReadPosRankSum=0.916;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391979    GT:AD:DP:GQ:PL    0/1:17,9:26:99:304,0,536
1    197576307    rs11411505    A    AT    1232.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=1;HaplotypeScore=102.7312;IndelType=I;MQ=61.0;MQ0=0;QD=39.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235453    GT:AD:DP:GQ:PL    1/1:2,29:31:87.29:1275,87,0
1    197576350    rs75687955    T    C    368.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.637;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.71;MQ0=0;MQRankSum=1.273;QD=20.45;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235453    GT:AD:DP:GQ:PL    0/1:6,12:18:99:398,0,117
1    197704717    rs17641524    C    T    540.09    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.846;DB;DP=30;Dels=0.0;FS=1.515;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=18.0;ReadPosRankSum=1.381;SNPEFF_AMINO_ACID_CHANGE=S17;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197704716_197704926;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000235453    GT:AD:DP:GQ:PL    0/1:13,17:30:99:570,0,342
1    197741951    rs2477067    C    A    904.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=36;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-1.348;QD=25.13;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235453    GT:AD:DP:GQ:PL    1/1:1,35:36:84.22:938,84,0
1    197742171    rs2488396    C    T    533.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235453    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:566,42,0
1    197876533    rs1546244    C    A    455.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367393    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:488,36,0
1    197881578    .    G    C    378.99    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=3.862;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.022;QD=11.84;ReadPosRankSum=0.676;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337020    GT:AD:DP:GQ:PL    0/1:15,17:32:99:409,0,394
1    197890422    rs12122995    C    G    1217.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475727    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1250,93,0
1    197896728    rs12046958    T    C    3015.98    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.292;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8663;MQ=59.91;MQ0=0;MQRankSum=1.583;QD=12.06;ReadPosRankSum=1.076;SNPEFF_AMINO_ACID_CHANGE=N238;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_197896721_197896923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LHX9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367390    GT:AD:DP:GQ:PL    0/1:144,106:250:99:3046,0,4324
1    197898023    rs33915360    C    CAA    230.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=86.7208;IndelType=I;MQ=56.95;MQ0=0;MQRankSum=0.668;QD=16.49;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LHX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337020    GT:AD:DP:GQ:PL    1/1:2,7:14:8.04:272,8,0
1    198661415    .    G    A    320.05    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DP=29;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.375;QD=11.04;ReadPosRankSum=-2.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271610    GT:AD:DP:GQ:PL    0/1:14,15:29:99:350,0,402
1    198675683    rs16843746    T    C    36.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391970    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
1    198679093    rs10753834    G    T    609.96    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.971;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=0.35;QD=16.49;ReadPosRankSum=-1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367379    GT:AD:DP:GQ:PL    0/1:17,20:37:99:640,0,590
1    198703306    rs6683595    C    T    733.29    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.31;DB;DP=49;Dels=0.0;FS=1.771;HRun=1;HaplotypeScore=1.7287;MQ=60.0;MQ0=0;MQRankSum=-0.23;QD=14.97;ReadPosRankSum=-0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530727    GT:AD:DP:GQ:PL    0/1:25,24:49:99:763,0,838
1    198704294    rs7540378    C    T    313.96    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.205;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;MQRankSum=1.269;QD=13.08;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G609;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_198704256_198704381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348564    GT:AD:DP:GQ:PL    0/1:9,14:24:99:344,0,316
1    198711170    .    CA    C    167.35    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=0.664;DP=27;FS=0.0;HRun=12;HaplotypeScore=99.9951;IndelType=D;MQ=59.14;MQ0=0;MQRankSum=-0.606;QD=6.2;ReadPosRankSum=1.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271610    GT:AD:DP:GQ:PL    0/1:16,11:27:99:206,0,292
1    198717218    rs71286550    GTT    G    189.51    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=25;FS=6.16;HRun=16;HaplotypeScore=150.1871;IndelType=D;MQ=58.08;MQ0=0;MQRankSum=1.659;QD=7.58;ReadPosRankSum=2.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271610    GT:AD:DP:GQ:PL    0/1:6,15:25:99:229,0,190
1    200089872    rs10494808    C    T    230.56    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.444;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=10.48;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236914    GT:AD:DP:GQ:PL    0/1:14,8:22:99:261,0,483
1    200090120    rs3762398    G    A    761.58    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.255;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=14.93;ReadPosRankSum=0.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236914    GT:AD:DP:GQ:PL    0/1:24,27:51:99:792,0,709
1    200090219    rs3762397    C    T    67.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.55;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236914    GT:AD:DP:GQ:PL    0/1:6,3:9:97.97:98,0,182
1    200143442    rs1060061    T    C    334.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542116    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:368,27,0
1    200312546    rs142440706    CA    C    170.56    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DB;DP=32;FS=0.0;HRun=15;HaplotypeScore=148.0278;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=0.066;QD=5.33;ReadPosRankSum=1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367355    GT:AD:DP:GQ:PL    0/1:12,15:32:0.92:208,0,1
1    200522269    rs6667775    G    A    160.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
1    200522351    rs10800708    A    T    708.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:742,54,0
1    200522566    rs12120084    G    C    1486.62    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.785;DB;DP=108;Dels=0.0;FS=11.612;HRun=0;HaplotypeScore=2.9931;MQ=59.83;MQ0=0;MQRankSum=-0.314;QD=13.76;ReadPosRankSum=-0.498;SNPEFF_AMINO_ACID_CHANGE=P1633A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_200520628_200522895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    0/1:51,57:108:99:1517,0,1740
1    200523514    rs7548174    A    G    449.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:483,42,0
1    200534248    rs7543730    C    T    3381.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.456;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=59.56;MQ0=0;MQRankSum=-0.128;QD=35.6;ReadPosRankSum=-0.602;SNPEFF_AMINO_ACID_CHANGE=E1340;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_200534197_200534381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:1,94:95:99:3382,211,0
1    200538885    rs10800711    C    T    93.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    200549590    rs10753877    T    C    756.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:790,60,0
1    200550166    rs12093062    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.08;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    200555074    rs12092539    C    G    30.02    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=3.75;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    0/1:5,3:8:60.01:60,0,187
1    200555482    rs6691410    C    T    243.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=15.24;ReadPosRankSum=-0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    0/1:8,8:16:99:274,0,274
1    200558363    rs6665951    T    C    3785.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=E1032;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_200558345_200558497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3786,286,0
1    200569392    rs2809357    C    A    1685.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.49;MQ0=0;QD=37.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1719,132,0
1    200573258    rs2808237    C    G    169.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
1    200578093    rs2794409    G    A    630.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:663,51,0
1    200594005    rs2808257    C    T    523.59    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.977;DB;DP=36;Dels=0.0;FS=6.084;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=14.54;ReadPosRankSum=-1.958;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367350    GT:AD:DP:GQ:PL    0/1:16,20:36:99:554,0,447
1    200594240    rs2809350    G    A    258.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447706    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:291,21,0
1    200610525    rs5780032    TA    T    142.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=14;HaplotypeScore=36.7758;IndelType=D;MQ=58.63;MQ0=0;QD=15.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331314    GT:AD:DP:GQ:PL    1/1:2,7:9:26.76:185,27,0
1    200618238    rs6665604    T    C    2466.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=S115;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_200618202_200618354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413408    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2500,190,0
1    200619478    rs2808230    C    A    486.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453944    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:519,39,0
1    200619530    rs2809365    T    C    920.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453944    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:954,69,0
1    200632960    rs57155598    T    C    131.19    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.87;MQ0=0;MQRankSum=0.47;QD=11.93;ReadPosRankSum=1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436897    GT:AD:DP:GQ:PL    0/1:5,6:11:99:161,0,173
1    200632966    rs60572979    A    G    129.65    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=11.79;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436897    GT:AD:DP:GQ:PL    0/1:5,6:11:99:160,0,164
1    200635550    rs3795634    T    C    520.15    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.414;DB;DP=44;Dels=0.0;FS=1.582;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=1.761;QD=11.82;ReadPosRankSum=-0.863;SNPEFF_AMINO_ACID_CHANGE=I107V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_200635065_200635879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331314    GT:AD:DP:GQ:PL    0/1:21,22:44:99:550,0,656
1    200635560    rs3795633    T    C    537.20    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.83;DB;DP=41;Dels=0.0;FS=1.582;HRun=4;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=1.187;QD=13.1;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=P103;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_200635065_200635879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331314    GT:AD:DP:GQ:PL    0/1:21,20:41:99:567,0,695
1    200635618    rs146060105    C    G    639.37    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.016;DB;DP=36;Dels=0.0;FS=1.297;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.568;QD=17.76;ReadPosRankSum=1.639;SNPEFF_AMINO_ACID_CHANGE=S84T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_200635065_200635879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331314    GT:AD:DP:GQ:PL    0/1:14,22:36:99:669,0,437
1    200635721    rs150913822    C    G    724.64    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=51;Dels=0.0;FS=8.414;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.179;QD=14.21;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=A50P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_200635065_200635879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX59;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331314    GT:AD:DP:GQ:PL    0/1:26,25:51:99:755,0,813
1    200801621    rs1874080    T    A    168.77    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=18.75;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236925    GT:AD:DP:GQ:PL    0/1:1,8:9:2.62:198,0,3
1    200816521    rs2172666    G    T    113.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236925    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:146,12,0
1    200816658    rs2131834    T    C    502.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236925    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:535,42,0
1    200821536    rs10800743    C    T    237.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236925    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:270,21,0
1    200824978    rs61825260    C    T    269.89    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.08;MQ0=0;QD=20.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236925    GT:AD:DP:GQ:PL    1/1:0,13:13:35.94:303,36,0
1    200824980    rs2029752    C    T    156.33    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.08;MQ0=0;QD=12.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236925    GT:AD:DP:GQ:PL    1/1:0,13:13:23.91:189,24,0
1    200824981    rs2029753    C    T    157.34    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.08;MQ0=0;QD=12.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236925    GT:AD:DP:GQ:PL    1/1:0,13:13:23.92:190,24,0
1    200842005    rs61825263    T    A    85.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.44;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304244    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
1    200842006    rs35650485    C    G    84.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.24;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304244    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
1    200843305    rs3738250    G    T    74.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.93;ReadPosRankSum=1.231;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304244    GT:AD:DP:GQ:PL    0/1:2,3:5:70.19:105,0,70
1    200868493    rs72225687    GTGTGTGTGCA    G    900.89    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=228.9557;IndelType=D;MQ=47.18;MQ0=0;MQRankSum=0.0;QD=39.17;ReadPosRankSum=0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf106;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367342    GT:AD:DP:GQ:PL    0/1:9,14:23:44.09:940,0,44
1    200877850    rs41299637    T    G    4468.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=59.51;MQ0=0;QD=31.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf106;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531649    GT:AD:DP:GQ:PL    1/1:0,142:142:99:4469,352,0
1    200943793    rs71991687    CAGGA    C    1078.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=109.5528;IndelType=D;MQ=53.27;MQ0=0;QD=53.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332129    GT:AD:DP:GQ:PL    1/1:0,20:20:60.21:1120,60,0
1    200957697    rs12142704    A    G    101.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=25.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332129    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
1    200960307    rs2297909    G    A    625.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332129    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:658,48,0
1    200965130    rs7531978    G    T    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332129    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:116,9,0
1    200965601    rs10920088    G    A    693.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534043    GT:AD:DP:GQ:PL    1/1:0,19:19:57.16:726,57,0
1    200967490    rs10920089    A    G    1271.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=58.97;MQ0=0;QD=28.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534043    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1304,105,0
1    200975040    rs6657915    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332129    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    201009556    rs1546416    A    G    413.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.85;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:447,33,0
1    201009897    rs6427875    T    C    100.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:133,12,0
1    201012597    rs41267497    G    A    215.32    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=9.36;ReadPosRankSum=0.85;SNPEFF_AMINO_ACID_CHANGE=P1601;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201012409_201012659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367338    GT:AD:DP:GQ:PL    0/1:14,9:23:99:245,0,489
1    201013336    rs2297906    T    C    319.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
1    201020360    rs12138260    G    A    98    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=8.91;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,247
1    201038687    rs7415038    A    G    168.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_AMINO_ACID_CHANGE=F801;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201038600_201038729;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
1    201042476    rs72458456    TCTG    T    307.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=29.7549;IndelType=D;MQ=44.98;MQ0=0;QD=44.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:350,21,0
1    201043845    rs66932448    ACT    A    173.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=17.6041;IndelType=D;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:215,15,0
1    201044748    rs1998721    A    G    2499.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,72:73:99:2532,187,0
1    201046379    rs925060    T    G    157.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
1    201046388    rs6672094    A    G    124.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    201047075    rs4915477    A    G    1187.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.27;SNPEFF_AMINO_ACID_CHANGE=G517;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201047007_201047232;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1220,102,0
1    201047111    rs9427714    A    G    1935.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=C505;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201047007_201047232;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1968,150,0
1    201052310    rs12742169    A    T    1236.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=57.66;MQ0=0;QD=30.91;SNPEFF_AMINO_ACID_CHANGE=L458H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201052290_201052450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1270,102,0
1    201052312    rs12742170    A    C    1345.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=57.71;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=P457;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201052290_201052450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:1,40:41:99:1379,105,0
1    201052474    rs12724643    T    C    1046.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8317;MQ=59.43;MQ0=0;MQRankSum=1.625;QD=31.71;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:1,32:33:47.27:1079,47,0
1    201052562    rs12743065    G    T    346.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:380,30,0
1    201056749    rs72749197    T    C    77.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,4:4:9:109,9,0
1    201058692    rs2296384    T    C    132.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
1    201060865    rs2296383    G    A    476.85    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.23;MQ0=0;MQRankSum=0.478;QD=15.9;ReadPosRankSum=0.644;SNPEFF_AMINO_ACID_CHANGE=I199;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201060768_201060920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1S;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000362061    GT:AD:DP:GQ:PL    0/1:14,16:30:99:507,0,461
1    201112981    rs8158    A    G    730.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=Y122;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201112948_201113079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367329    GT:AD:DP:GQ:PL    1/1:0,23:23:60.15:763,60,0
1    201113118    rs3738266    A    G    403.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414605    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:437,33,0
1    201115822    rs3752978    A    G    585.30    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.539;DB;DP=48;Dels=0.0;FS=3.04;HRun=1;HaplotypeScore=1.5253;MQ=59.52;MQ0=0;MQRankSum=-0.297;QD=12.19;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414605    GT:AD:DP:GQ:PL    0/1:25,23:48:99:615,0,667
1    201116018    rs3752979    C    G    1178.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367329    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1212,90,0
1    201120730    rs2068152    C    A    420.60    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.113;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.784;QD=21.03;ReadPosRankSum=-2.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367329    GT:AD:DP:GQ:PL    0/1:6,14:20:99:451,0,193
1    201121225    rs3818435    T    A    49.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367329    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    201122784    rs6684980    C    T    279.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367329    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
1    201122947    rs1925361    T    G    934.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.47;MQ0=0;QD=26.71;SNPEFF_AMINO_ACID_CHANGE=T35;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201122911_201123087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414605    GT:AD:DP:GQ:PL    1/1:0,35:35:78.22:968,78,0
1    201162411    rs12089471    G    A    121.21    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=6.06;ReadPosRankSum=0.866;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_201162375_201162428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:14,6:20:99:151,0,483
1    201165243    rs4915220    C    T    74.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.67;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,123
1    201166281    rs7533096    C    T    70.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,144
1    201166383    rs4915221    G    A    164.48    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.55;MQ0=0;MQRankSum=0.555;QD=12.65;ReadPosRankSum=0.377;SNPEFF_AMINO_ACID_CHANGE=R102H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201166346_201166445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335211    GT:AD:DP:GQ:PL    0/1:7,6:13:99:194,0,208
1    201166435    rs11589317    T    C    253.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.19;SNPEFF_AMINO_ACID_CHANGE=T119;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201166346_201166445;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335211    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:287,24,0
1    201169601    rs35998091    C    T    360.03    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.887;QD=18.95;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:7,12:19:99:390,0,233
1    201170772    rs10157730    A    G    692.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:726,54,0
1    201170824    rs10158976    C    G    1174.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    1/1:0,34:34:90.26:1208,90,0
1    201171007    rs10800762    T    G    728.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:761,57,0
1    201173104    rs832160    C    T    130.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
1    201174204    rs12725611    C    T    180.56    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.489;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5981;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=6.45;ReadPosRankSum=-0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:19,9:28:99:211,0,566
1    201175227    rs832156    C    A    209.18    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;Dels=0.0;FS=1.987;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=13.07;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=D402E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201175211_201182749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335211    GT:AD:DP:GQ:PL    0/1:7,9:16:99:239,0,213
1    201175274    rs9651057    A    G    328.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.37;SNPEFF_AMINO_ACID_CHANGE=Q418R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201175211_201182749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335211    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:361,27,0
1    201175715    rs1341631    G    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=R565L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201175211_201182749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335211    GT:AD:DP:GQ:PL    0/1:2,2:4:68.40:70,0,68
1    201184097    rs4915496    G    A    101.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.28;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:5,4:9:99:132,0,169
1    201187764    rs10920144    T    C    652.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=A3292;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201187658_201187786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335211    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:685,54,0
1    201187828    rs3738268    T    C    452.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451870    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:485,36,0
1    201190732    rs3738269    G    A    493.88    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=29;Dels=0.0;FS=4.192;HRun=0;HaplotypeScore=1.8737;MQ=59.2;MQ0=0;MQRankSum=0.988;QD=17.03;ReadPosRankSum=1.646;SNPEFF_AMINO_ACID_CHANGE=V3353;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201190572_201190874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335211    GT:AD:DP:GQ:PL    0/1:11,18:29:99:524,0,307
1    201193668    rs6687494    G    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    201194174    rs12134361    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    201195119    rs3738270    C    T    128.02    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.793;QD=8.0;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=H3552Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201194952_201195251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335211    GT:AD:DP:GQ:PL    0/1:11,5:16:99:158,0,276
1    201195739    rs16848109    G    C    95.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:128,9,0
1    201197299    rs3753970    G    A    145.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.336;QD=14.55;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,139
1    201197331    rs3753971    G    A    535.46    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=3.878;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=21.42;ReadPosRankSum=0.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:9,16:25:99:565,0,232
1    201197358    rs3753972    G    C    206.06    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.318;QD=7.11;ReadPosRankSum=-0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:21,8:29:99:236,0,765
1    201197471    rs3753973    T    C    1210.62    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.173;DB;DP=97;Dels=0.0;FS=20.107;HRun=0;HaplotypeScore=1.8237;MQ=59.33;MQ0=0;MQRankSum=-0.77;QD=12.48;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295591    GT:AD:DP:GQ:PL    0/1:52,44:97:99:1241,0,1620
1    201252866    rs2268147    C    T    282.10    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=14.11;ReadPosRankSum=-0.844;SNPEFF_AMINO_ACID_CHANGE=Y12;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201252580_201253032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    0/1:9,11:20:99:312,0,188
1    201282573    rs35507614    A    G    94.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=8.61;ReadPosRankSum=1.031;SNPEFF_AMINO_ACID_CHANGE=I196V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201282294_201282688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    0/1:6,5:11:99:125,0,209
1    201285591    rs72753125    G    A    70.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=11.75;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    0/1:3,3:6:94.86:100,0,95
1    201285759    rs1779297    A    G    637.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=K260;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201285681_201285825;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:671,51,0
1    201285909    rs1534051    A    G    384.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:418,33,0
1    201286614    rs34292782    GA    G    166.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=10;HaplotypeScore=48.2371;IndelType=D;MQ=61.34;MQ0=0;QD=20.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    1/1:0,8:8:24:208,24,0
1    201286628    rs1772823    C    G    251.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:285,21,0
1    201288007    rs1794868    G    A    89.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    201288898    rs1722759    A    C    1110.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.121;QD=31.71;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263946    GT:AD:DP:GQ:PL    1/1:1,34:35:84.27:1143,84,0
1    201289646    rs1628711    T    C    113.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475988    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
1    201290968    rs1779292    T    G    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475988    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    201291066    rs2071960    C    T    571.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475988    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:604,45,0
1    201292110    rs1779288    T    C    2805.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=30.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475988    GT:AD:DP:GQ:PL    1/1:0,89:91:99:2839,214,0
1    201293512    rs36076398    TG    T    121.05    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=2.997;DB;DP=21;FS=0.0;HRun=3;HaplotypeScore=49.8205;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=0.584;QD=5.76;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475988    GT:AD:DP:GQ:PL    0/1:15,6:21:99:160,0,545
1    201293970    rs1620046    C    T    1787.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.13;MQ0=0;QD=33.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475988    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1820,138,0
1    201293985    rs854505    G    A    1180.22    PASS    AB=0.369;AC=1;AF=0.50;AN=2;BaseQRankSum=5.177;DB;DP=65;Dels=0.0;FS=8.502;HRun=2;HaplotypeScore=1.5661;MQ=58.93;MQ0=0;MQRankSum=1.511;QD=18.16;ReadPosRankSum=1.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475988    GT:AD:DP:GQ:PL    0/1:24,41:65:99:1210,0,573
1    201294278    rs41269943    G    A    929.48    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=65;Dels=0.0;FS=2.866;HRun=0;HaplotypeScore=2.4328;MQ=59.29;MQ0=0;MQRankSum=-0.8;QD=14.3;ReadPosRankSum=-0.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475988    GT:AD:DP:GQ:PL    0/1:26,38:65:99:959,0,826
1    201331554    rs1104859    T    G    676.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412633    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:710,51,0
1    201331664    rs2365652    C    A    233.57    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.747;QD=29.2;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412633    GT:AD:DP:GQ:PL    0/1:1,7:8:15.93:264,0,16
1    201334382    rs3729547    G    A    3594.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=59.79;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=I101;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201334319_201334435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360372    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3595,262,0
1    201334795    rs3729845    C    T    167.26    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DB;DP=15;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.734;MQ=58.45;MQ0=0;MQRankSum=-0.201;QD=11.15;ReadPosRankSum=1.67;SNPEFF_AMINO_ACID_CHANGE=S10;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201334738_201334798;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367319    GT:AD:DP:GQ:PL    0/1:8,7:15:99:197,0,192
1    201335899    rs1573230    C    T    1571.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472177    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1604,120,0
1    201336641    rs1892028    G    A    75.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236918    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
1    201337170    rs3729842    A    G    287.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=28.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236918    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:320,27,0
1    201338896    rs10920184    T    C    1945.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503578    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1979,153,0
1    201339043    rs12049476    C    T    645.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503578    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:679,51,0
1    201341175    rs45533739    CAGAAG    C    3953.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.0;HRun=0;HaplotypeScore=405.3627;IndelType=D;MQ=55.14;MQ0=0;QD=59.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503578    GT:AD:DP:GQ:PL    1/1:1,65:66:99:3953,193,0
1    201341341    rs868407    C    T    1331.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.98;MQ0=0;QD=30.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503578    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1364,108,0
1    201352080    rs72737636    G    A    527.16    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.964;DB;DP=35;Dels=0.0;FS=6.698;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=1.667;QD=15.06;ReadPosRankSum=1.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367313    GT:AD:DP:GQ:PL    0/1:17,18:35:99:557,0,485
1    201353827    rs10920189    G    C    1100.14    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=5.613;DB;DP=70;Dels=0.0;FS=3.499;HRun=2;HaplotypeScore=0.6651;MQ=59.67;MQ0=0;MQRankSum=-1.233;QD=15.72;ReadPosRankSum=0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367313    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1130,0,861
1    201354102    rs34070820    C    G    244.13    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.865;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=17.44;ReadPosRankSum=0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367313    GT:AD:DP:GQ:PL    0/1:6,8:14:99:274,0,202
1    201355522    rs4128458    T    C    126.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=8.41;ReadPosRankSum=-0.796;SNPEFF_AMINO_ACID_CHANGE=K323E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201355463_201356306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391967    GT:AD:DP:GQ:PL    0/1:10,5:15:99:156,0,364
1    201355669    rs68021059    T    C    696.35    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=72;Dels=0.0;FS=9.407;HRun=0;HaplotypeScore=2.6278;MQ=58.05;MQ0=0;MQRankSum=0.235;QD=9.67;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=T274A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201355463_201356306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391967    GT:AD:DP:GQ:PL    0/1:43,27:72:99:726,0,1175
1    201355943    rs2799677    C    T    1558.05    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.711;DB;DP=95;Dels=0.0;FS=1.733;HRun=2;HaplotypeScore=0.9578;MQ=59.22;MQ0=0;MQRankSum=1.665;QD=16.4;ReadPosRankSum=0.927;SNPEFF_AMINO_ACID_CHANGE=K182;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201355463_201356306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391967    GT:AD:DP:GQ:PL    0/1:40,55:95:99:1588,0,1183
1    201356428    rs4915230    C    A    289.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=19.32;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367313    GT:AD:DP:GQ:PL    0/1:5,10:15:99:320,0,146
1    201383616    rs2026593    A    G    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336092    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    201383643    rs2026594    A    C    80.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336092    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
1    201437477    rs1256930    A    T    376.01    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.034;QD=17.09;ReadPosRankSum=-0.375;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485436    GT:AD:DP:GQ:PL    0/1:8,14:22:99:406,0,196
1    201454373    .    G    A    881.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DP=68;Dels=0.0;FS=2.738;HRun=0;HaplotypeScore=1.9648;MQ=58.7;MQ0=0;MQRankSum=1.097;QD=12.97;ReadPosRankSum=1.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458271    GT:AD:DP:GQ:PL    0/1:34,34:68:99:912,0,1117
1    201457963    .    A    G    154.78    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.242;DP=32;Dels=0.0;FS=6.683;HRun=0;HaplotypeScore=0.8321;MQ=58.69;MQ0=0;MQRankSum=-0.065;QD=4.84;ReadPosRankSum=-1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471596    GT:AD:DP:GQ:PL    0/1:24,8:32:99:185,0,649
1    201687406    rs11588142    G    A    168.74    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=3.802;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.309;QD=14.06;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    0/1:5,7:12:99:199,0,170
1    201687451    rs11576721    A    G    247.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.062;DB;DP=20;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.794;QD=12.35;ReadPosRankSum=-0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    0/1:10,10:20:99:277,0,275
1    201749520    rs529581    G    C    2046.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2080,153,0
1    201752164    rs552840    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    201752429    rs527725    A    C    2821.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=40.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2854,208,0
1    201754410    rs36061932    CTT    C    97.91    QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.457;DB;DP=133;FS=5.663;HRun=17;HaplotypeScore=1123.0635;IndelType=D;MQ=50.68;MQ0=2;MQRankSum=2.512;QD=0.72;ReadPosRankSum=1.547;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    0/1:103,14:133:99:137,0,844
1    201754411    rs59543474    T    TC    1268.94    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=132;FS=1.986;HRun=1;HaplotypeScore=966.0982;IndelType=I;MQ=50.81;MQ0=2;MQRankSum=0.851;QD=9.4;ReadPosRankSum=1.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    0/1:108,27:132:99:1308,0,1018
1    201755469    rs12563363    C    G    1019.78    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.306;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=14.36;ReadPosRankSum=-0.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    0/1:37,34:71:99:1050,0,1190
1    201755933    rs12048682    A    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    0/1:2,2:4:66.99:72,0,67
1    201759121    rs16849352    T    G    76.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:106,0,67
1    201763467    .    AC    A    246.58    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=2.98;DP=19;FS=0.0;HRun=2;HaplotypeScore=58.9888;IndelType=D;MQ=60.57;MQ0=0;MQRankSum=1.266;QD=12.98;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    0/1:10,9:19:99:286,0,381
1    201772863    rs34105833    T    TG    957.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=6;HaplotypeScore=51.363;IndelType=I;MQ=60.81;MQ0=0;QD=38.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477118    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:999,72,0
1    201773728    .    AAAT    A    499.50    PASS    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DP=43;FS=0.0;HRun=0;HaplotypeScore=410.6111;IndelType=D;MQ=39.33;MQ0=0;MQRankSum=-0.087;QD=11.62;ReadPosRankSum=1.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477118    GT:AD:DP:GQ:PL    0/1:36,7:43:99:539,0,518
1    201773729    .    AAT    A    556.87    PASS    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=0.376;DP=43;FS=0.0;HRun=0;HaplotypeScore=394.9053;IndelType=D;MQ=39.33;MQ0=0;MQRankSum=-0.505;QD=12.95;ReadPosRankSum=1.541;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477118    GT:AD:DP:GQ:PL    0/1:38,5:43:99:596,0,415
1    201780458    rs1878610    G    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    201788804    rs11803449    G    A    163.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295624    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
1    201816572    rs12042456    G    A    359.23    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.216;QD=17.96;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361565    GT:AD:DP:GQ:PL    0/1:9,11:20:99:389,0,308
1    201824390    rs11576508    G    A    318.29    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.879;QD=14.47;ReadPosRankSum=0.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464348    GT:AD:DP:GQ:PL    0/1:12,10:22:99:348,0,430
1    201832451    rs2678206    T    G    282.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361565    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
1    201837934    rs34353605    CGT    C    213.52    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DB;DP=23;FS=2.077;HRun=0;HaplotypeScore=80.3175;IndelType=D;MQ=61.4;MQ0=0;MQRankSum=-0.353;QD=9.28;ReadPosRankSum=0.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361565    GT:AD:DP:GQ:PL    0/1:14,9:23:99:253,0,333
1    201840059    rs3830534    GTTATT    G    232.97    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=57.4046;IndelType=D;MQ=53.36;MQ0=0;MQRankSum=-1.668;QD=21.18;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361565    GT:AD:DP:GQ:PL    0/1:6,5:11:99:272,0,389
1    201840210    rs950114    T    C    371.06    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.415;DB;DP=27;Dels=0.0;FS=2.447;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.708;QD=13.74;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361565    GT:AD:DP:GQ:PL    0/1:15,12:27:99:401,0,537
1    201840464    rs2644124    T    C    898.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.03;FS=0.0;HRun=2;HaplotypeScore=1.933;MQ=53.74;MQ0=0;QD=28.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361565    GT:AD:DP:GQ:PL    1/1:0,30:30:75.21:932,75,0
1    201844128    rs2678203    G    A    1545.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361565    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1578,120,0
1    201860626    rs2250377    A    G    3571.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=59.56;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=I159M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201860529_201860696;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SHISA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000362011    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3572,274,0
1    201861016    rs2279681    C    G    1860.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367288    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1893,144,0
1    201865763    rs8028    A    G    736.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412469    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:769,60,0
1    201924725    rs144645970    A    G    295.80    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=19;Dels=0.0;FS=3.039;HRun=0;HaplotypeScore=0.9987;MQ=58.78;MQ0=0;MQRankSum=1.268;QD=15.57;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367287    GT:AD:DP:GQ:PL    0/1:8,11:19:99:326,0,213
1    201924749    rs3820438    G    C    320.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=22.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367287    GT:AD:DP:GQ:PL    1/1:0,14:14:33.07:354,33,0
1    201926386    rs66503553    C    CT    299.70    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.279;DB;DP=22;FS=0.0;HRun=8;HaplotypeScore=79.6272;IndelType=I;MQ=60.49;MQ0=0;MQRankSum=0.347;QD=13.62;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367287    GT:AD:DP:GQ:PL    0/1:10,11:22:99:339,0,160
1    201926403    rs61821487    T    G    258.08    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.052;DB;DP=28;Dels=0.0;FS=4.483;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=9.22;ReadPosRankSum=-0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367287    GT:AD:DP:GQ:PL    0/1:16,12:28:99:288,0,499
1    201934578    rs4648    G    A    564.20    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.825;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.04;QD=17.1;ReadPosRankSum=0.595;SNPEFF_AMINO_ACID_CHANGE=V113I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201934561_201934671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM17A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367287    GT:AD:DP:GQ:PL    0/1:11,21:33:99:594,0,378
1    201966295    rs143195550    TG    T    119.95    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=32.4057;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=0.361;QD=13.33;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295640    GT:AD:DP:GQ:PL    0/1:4,5:9:99:159,0,146
1    201969082    rs1130790    G    A    313.29    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=24;Dels=0.0;FS=3.821;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.877;QD=13.05;ReadPosRankSum=-1.569;SNPEFF_AMINO_ACID_CHANGE=Q250;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201969030_201969143;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNPEP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447312    GT:AD:DP:GQ:PL    0/1:11,13:24:99:343,0,259
1    201970562    rs4332408    T    C    1043.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_AMINO_ACID_CHANGE=V129;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201970504_201970616;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNPEP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449524    GT:AD:DP:GQ:PL    1/1:0,34:34:81.26:1077,81,0
1    201970748    rs4131469    G    A    1118.47    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=4.318;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.98;MQ0=0;MQRankSum=-0.824;QD=16.45;ReadPosRankSum=0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479726    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1148,0,649
1    201970986    rs35227221    C    CA    269.65    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=14;FS=0.0;HRun=4;HaplotypeScore=28.3803;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=-1.092;QD=19.26;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447312    GT:AD:DP:GQ:PL    0/1:6,8:14:99:309,0,156
1    201973565    rs3820439    G    A    2013.27    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9347;MQ=59.48;MQ0=0;MQRankSum=1.048;QD=14.28;ReadPosRankSum=0.441;SNPEFF_AMINO_ACID_CHANGE=V540I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201973482_201973624;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNPEP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367286    GT:AD:DP:GQ:PL    0/1:71,69:141:99:2043,0,2095
1    201974503    rs10737577    C    T    169.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.736;QD=24.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447312    GT:AD:DP:GQ:PL    1/1:1,5:7:15.05:202,15,0
1    201980119    rs2819361    C    G    163.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295640    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
1    201981218    rs11543979    C    G    750.95    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=4.999;DB;DP=63;Dels=0.0;FS=2.597;HRun=2;HaplotypeScore=1.445;MQ=58.89;MQ0=0;MQRankSum=-0.669;QD=11.92;ReadPosRankSum=-0.71;SNPEFF_AMINO_ACID_CHANGE=G97;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201981085_201981306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446188    GT:AD:DP:GQ:PL    0/1:34,29:63:99:781,0,973
1    201981862    rs2819362    T    C    1157.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=P189;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_201981768_201981887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446188    GT:AD:DP:GQ:PL    1/1:0,36:36:96.30:1191,96,0
1    202092046    rs3795593    C    T    549.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_202091986_202092721;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367282    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:582,45,0
1    202092360    rs3795595    G    A    1009.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=G90D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202091986_202092721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR37L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367282    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1043,78,0
1    202092415    rs3795596    A    G    1275.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.03;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=58.74;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=G108;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202091986_202092721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR37L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367282    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1309,102,0
1    202092580    rs7516762    T    C    500.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=S163;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202091986_202092721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR37L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367282    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:533,42,0
1    202096815    rs3820380    G    A    993.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367282    GT:AD:DP:GQ:PL    1/1:0,28:28:78.22:1026,78,0
1    202103802    rs4342901    G    A    75.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.19;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486225    GT:AD:DP:GQ:PL    0/1:2,3:5:61.54:106,0,62
1    202107422    rs10531175    AACACAC    A    363.65    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=89.5811;IndelType=D;MQ=42.92;MQ0=0;MQRankSum=-1.214;QD=27.97;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272217    GT:AD:DP:GQ:PL    0/1:6,7:13:99:403,0,172
1    202113835    rs4989100    T    G    75.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.57;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308986    GT:AD:DP:GQ:PL    0/1:3,3:6:97.15:105,0,97
1    202122783    rs11590076    C    A    214.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6548;MQ=58.33;MQ0=0;MQRankSum=1.524;QD=15.3;ReadPosRankSum=1.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435759    GT:AD:DP:GQ:PL    0/1:7,7:14:99:244,0,239
1    202128768    rs59879043    C    G    150.65    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308986    GT:AD:DP:GQ:PL    0/1:1,5:6:8.63:180,0,9
1    202163063    rs2361431    T    C    119.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.94;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_202163029_202163329;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367278    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
1    202163364    rs2077598    C    G    284.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367278    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
1    202163516    rs1812761    C    A    126.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367278    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
1    202163621    rs3120747    G    A    117.16    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=7;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.736;QD=16.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367278    GT:AD:DP:GQ:PL    0/1:1,6:7:27.60:147,0,28
1    202172769    rs12122827    T    G    73.64    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=14.73;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367278    GT:AD:DP:GQ:PL    0/1:1,4:5:27.97:104,0,28
1    202194441    rs3010067    G    C    219.37    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=9.54;ReadPosRankSum=0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255432    GT:AD:DP:GQ:PL    0/1:14,9:23:99:249,0,478
1    202196931    rs1452070    G    A    250.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255432    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
1    202197161    rs3795598    C    T    610.94    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.924;DB;DP=44;Dels=0.0;FS=1.358;HRun=0;HaplotypeScore=0.5784;MQ=59.15;MQ0=0;MQRankSum=2.227;QD=13.88;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255432    GT:AD:DP:GQ:PL    0/1:19,25:44:99:641,0,652
1    202266547    rs788827    C    T    541.26    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.018;DB;DP=34;Dels=0.0;FS=6.698;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.604;QD=15.92;ReadPosRankSum=1.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255432    GT:AD:DP:GQ:PL    0/1:16,18:34:99:571,0,501
1    202266607    rs788826    C    T    704.35    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=57;Dels=0.0;FS=2.738;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-1.918;QD=12.36;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255432    GT:AD:DP:GQ:PL    0/1:30,27:57:99:734,0,999
1    202274936    rs705762    T    C    484.17    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.63;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.78;MQ0=0;MQRankSum=0.442;QD=12.74;ReadPosRankSum=-0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423542    GT:AD:DP:GQ:PL    0/1:21,17:38:99:514,0,626
1    202276494    rs896551    C    T    163.22    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.276;DB;DP=42;Dels=0.0;FS=1.529;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.981;QD=3.89;ReadPosRankSum=-1.655;SNPEFF_AMINO_ACID_CHANGE=P276;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202276458_202276529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439764    GT:AD:DP:GQ:PL    0/1:33,9:42:99:193,0,949
1    202287206    rs788795    T    C    816.82    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.157;DB;DP=60;Dels=0.0;FS=1.045;HRun=5;HaplotypeScore=0.8941;MQ=59.3;MQ0=0;MQRankSum=-0.173;QD=13.61;ReadPosRankSum=1.68;SNPEFF_AMINO_ACID_CHANGE=V453A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202287080_202288335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439764    GT:AD:DP:GQ:PL    0/1:27,33:60:99:847,0,672
1    202287537    rs788794    G    A    32.75    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.231;QD=5.46;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=A563;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202287080_202288335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439764    GT:AD:DP:GQ:PL    0/1:4,2:6:62.74:63,0,69
1    202287813    rs788793    T    C    821.99    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.18;MQ0=0;MQRankSum=-0.31;QD=12.84;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=F655;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202287080_202288335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439764    GT:AD:DP:GQ:PL    0/1:34,29:64:99:852,0,1084
1    202304868    rs14451    T    C    570.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.641;DB;DP=35;Dels=0.0;FS=5.641;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.601;QD=16.3;ReadPosRankSum=1.038;SNPEFF_AMINO_ACID_CHANGE=S5;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202304774_202304946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2T;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367274    GT:AD:DP:GQ:PL    0/1:14,21:35:99:600,0,431
1    202318316    rs930734    A    C    100.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.693;DB;DP=21;Dels=0.0;FS=5.935;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.037;QD=4.77;ReadPosRankSum=-1.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336894    GT:AD:DP:GQ:PL    0/1:14,7:21:99:130,0,440
1    202386075    rs2843413    T    C    2027.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336894    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2061,150,0
1    202440936    rs2362282    T    A    147.06    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.274;DB;DP=36;Dels=0.0;FS=2.028;HRun=1;HaplotypeScore=2.2013;MQ=48.55;MQ0=1;MQRankSum=0.055;QD=4.09;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336894    GT:AD:DP:GQ:PL    0/1:26,10:36:99:177,0,657
1    202457784    rs3820374    T    A    106.14    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=8.84;ReadPosRankSum=-1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336894    GT:AD:DP:GQ:PL    0/1:7,5:12:99:136,0,224
1    202464280    rs12405771    G    A    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336894    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
1    202531646    rs705750    T    G    338.80    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.986;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.31;MQ0=0;MQRankSum=-0.18;QD=12.55;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336894    GT:AD:DP:GQ:PL    0/1:12,14:27:99:369,0,414
1    202531741    rs2249811    C    T    806.57    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=76;Dels=0.0;FS=8.281;HRun=1;HaplotypeScore=0.8667;MQ=59.75;MQ0=0;MQRankSum=-0.447;QD=10.61;ReadPosRankSum=1.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336894    GT:AD:DP:GQ:PL    0/1:45,31:76:99:837,0,1384
1    202536848    rs2292489    C    T    52.76    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.75;QD=2.78;ReadPosRankSum=0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466273    GT:AD:DP:GQ:PL    0/1:15,4:19:82.76:83,0,518
1    202566200    rs9633344    T    C    37.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367267    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
1    202572105    rs68164776    GCC    G    2443.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.0;HRun=7;HaplotypeScore=233.7224;IndelType=D;MQ=58.34;MQ0=0;QD=37.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367267    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2485,196,0
1    202574784    rs1968583    G    A    1340.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=S39;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202574723_202574917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367267    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1374,108,0
1    202702353    rs4950791    T    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    202703053    rs4310498    G    A    2227.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8004;MQ=59.71;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2261,166,0
1    202704860    rs4325196    G    A    274.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:307,24,0
1    202705455    rs1141109    G    C    751    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_AMINO_ACID_CHANGE=P1050;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202705341_202705520;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367265    GT:AD:DP:GQ:PL    1/1:0,27:27:66.15:784,66,0
1    202709624    rs71524469    G    A    103.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.9;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
1    202711350    rs6658451    T    C    291.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498276    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:325,27,0
1    202715244    rs5780122    G    GA    886.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=8;HaplotypeScore=145.0488;IndelType=I;MQ=60.34;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:1,26:28:81.24:928,81,0
1    202715284    rs1141108    G    A    1231.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=8.898;MQ=59.96;MQ0=0;QD=34.21;SNPEFF_AMINO_ACID_CHANGE=Y570;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202715270_202715451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:0,34:35:96.29:1264,96,0
1    202718028    rs1892163    A    G    1176.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.36;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456180    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1209,90,0
1    202718202    rs1892164    G    A    2372.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_AMINO_ACID_CHANGE=H471;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202718073_202718267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2405,178,0
1    202722277    rs4950742    G    A    823.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:857,63,0
1    202722348    rs4950793    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    202725286    rs3820153    A    G    52.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.03;MQ0=0;QD=10.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:83,6,0
1    202731986    .    C    CCTCAA    3567.31    PASS    AC=2;AF=1.00;AN=2;DP=49;FS=0.0;HRun=0;HaplotypeScore=170.5634;IndelType=I;MQ=51.88;MQ0=0;QD=72.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467487    GT:AD:DP:GQ:PL    1/1:10,39:49:99:3567,126,0
1    202733238    rs3196669    C    T    1944.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.448;QD=31.36;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=T249;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202733177_202733273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367265    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1978,111,0
1    202743892    rs17497253    T    C    402.18    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.798;DB;DP=34;Dels=0.0;FS=1.725;HRun=1;HaplotypeScore=0.8941;MQ=59.32;MQ0=0;MQRankSum=0.208;QD=11.83;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235790    GT:AD:DP:GQ:PL    0/1:19,15:34:99:432,0,568
1    202861463    rs35443455    TCTG    T    237.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=21.1077;IndelType=D;MQ=57.52;MQ0=0;QD=47.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435533    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:279,15,0
1    202861566    rs1042990    A    G    500.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.82;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABIF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367262    GT:AD:DP:GQ:PL    1/1:0,18:18:48.12:534,48,0
1    202878454    rs1539357    T    A    160.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367258    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
1    202878492    rs3820152    T    A    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367258    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    202887295    rs2275734    G    A    2215.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.65;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367258    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2249,166,0
1    202889207    rs7520522    T    C    39.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367258    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:71,6,0
1    202893919    rs6667300    C    T    528.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367258    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:561,42,0
1    202894165    .    T    G    1491.82    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.777;DP=104;Dels=0.0;FS=4.984;HRun=0;HaplotypeScore=1.9301;MQ=59.33;MQ0=0;MQRankSum=-0.131;QD=14.34;ReadPosRankSum=0.788;SNPEFF_AMINO_ACID_CHANGE=K42N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_202894096_202894335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367261    GT:AD:DP:GQ:PL    0/1:49,55:104:99:1522,0,1472
1    202914356    rs1342387    T    C    160.25    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=14.57;ReadPosRankSum=-2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADIPOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340990    GT:AD:DP:GQ:PL    0/1:5,6:11:99:190,0,164
1    202920300    rs2275737    A    C    49.58    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=4.13;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADIPOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340990    GT:AD:DP:GQ:PL    0/1:9,3:12:79.57:80,0,332
1    202920304    rs2275738    T    C    50.91    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.479;QD=4.24;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADIPOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340990    GT:AD:DP:GQ:PL    0/1:9,3:12:80.90:81,0,311
1    202931839    rs2232854    G    A    419.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.729;QD=16.78;ReadPosRankSum=-1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473599    GT:AD:DP:GQ:PL    0/1:10,15:25:99:450,0,300
1    202931958    rs2232853    G    A    452.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.281;DB;DP=30;Dels=0.0;FS=7.732;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.493;QD=15.08;ReadPosRankSum=-0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473599    GT:AD:DP:GQ:PL    0/1:15,15:30:99:482,0,458
1    202931998    rs2232852    C    A    651.47    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=0.631;DB;DP=35;Dels=0.0;FS=5.666;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.252;QD=18.61;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473599    GT:AD:DP:GQ:PL    0/1:13,22:35:99:681,0,289
1    202933657    rs2232847    T    A    138.90    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.361;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=6.95;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473599    GT:AD:DP:GQ:PL    0/1:14,6:20:99:169,0,441
1    202977665    rs3834027    G    GT    477.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=8;HaplotypeScore=34.8058;IndelType=I;MQ=58.55;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM183A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367242    GT:AD:DP:GQ:PL    1/1:1,15:16:45.13:519,45,0
1    202978032    rs1418444    C    G    460.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM183A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367242    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:494,36,0
1    202987770    rs782788    T    C    687.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM183A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463015    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:721,54,0
1    202987796    rs782787    G    A    358.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM183A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463015    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:392,30,0
1    202990110    rs71142585    CTTT    C    381.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=17;HaplotypeScore=227.5038;IndelType=D;MQ=48.57;MQ0=0;QD=11.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM183A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468449    GT:AD:DP:GQ:PL    1/1:18,15:34:43.34:423,43,0
1    202991745    rs12727457    C    T    87.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM183A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468449    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    203008174    rs61821060    G    C    398.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_AMINO_ACID_CHANGE=R13P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203007738_203008370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367240    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:431,33,0
1    203026203    rs903362    T    G    323.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272198    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:356,27,0
1    203040673    rs9803710    A    G    229.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272198    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:262,21,0
1    203053768    rs903356    T    C    152.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241651    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:185,15,0
1    203055101    rs4950877    A    G    248.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.515;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.14;QD=13.81;ReadPosRankSum=-0.421;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309502    GT:AD:DP:GQ:PL    0/1:6,12:18:99:278,0,170
1    203098275    rs10920568    T    G    1200.23    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.303;DB;DP=98;Dels=0.0;FS=2.864;HRun=1;HaplotypeScore=1.4972;MQ=59.77;MQ0=0;MQRankSum=-0.893;QD=12.12;ReadPosRankSum=-0.63;SNPEFF_AMINO_ACID_CHANGE=A102;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203097913_203098310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309502    GT:AD:DP:GQ:PL    0/1:52,46:98:99:1230,0,1505
1    203144198    rs2791720    T    C    36.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.933;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=6.04;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255409    GT:AD:DP:GQ:PL    0/1:3,3:6:66.24:66,0,102
1    203148633    rs4950927    A    G    765.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8533;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_AMINO_ACID_CHANGE=C364;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203148059_203148713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255409    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:799,60,0
1    203152801    rs880633    T    C    589.95    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.765;DB;DP=48;Dels=0.0;FS=2.649;HRun=2;HaplotypeScore=1.7886;MQ=59.52;MQ0=0;MQRankSum=-0.445;QD=12.29;ReadPosRankSum=0.514;SNPEFF_AMINO_ACID_CHANGE=R145G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203152769_203152919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255409    GT:AD:DP:GQ:PL    0/1:22,26:48:99:620,0,518
1    203153555    rs12128727    C    T    312.46    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.049;QD=18.38;ReadPosRankSum=-1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255409    GT:AD:DP:GQ:PL    0/1:7,10:17:99:342,0,243
1    203153634    rs2071579    C    G    608.50    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=14.49;ReadPosRankSum=-1.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255409    GT:AD:DP:GQ:PL    0/1:17,25:42:99:638,0,529
1    203154532    rs1538372    A    G    259.83    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9958;MQ=58.63;MQ0=0;MQRankSum=-1.376;QD=15.28;ReadPosRankSum=0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHI3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255409    GT:AD:DP:GQ:PL    0/1:7,10:17:99:290,0,231
1    203188692    rs2486958    A    C    413.44    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.173;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.039;QD=17.98;ReadPosRankSum=1.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506427    GT:AD:DP:GQ:PL    0/1:9,14:23:99:443,0,312
1    203189093    rs76499133    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513472    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
1    203192137    rs3820145    T    C    916.16    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.189;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.61;MQ0=0;MQRankSum=0.868;QD=19.09;ReadPosRankSum=-1.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513472    GT:AD:DP:GQ:PL    0/1:20,28:48:99:946,0,584
1    203192567    rs2297949    G    T    217.13    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=21;Dels=0.0;FS=2.162;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.784;QD=10.34;ReadPosRankSum=-1.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513472    GT:AD:DP:GQ:PL    0/1:8,13:21:99:247,0,253
1    203192820    rs10920586    C    T    532.23    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.014;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.59;MQ0=0;MQRankSum=-0.524;QD=13.65;ReadPosRankSum=0.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255427    GT:AD:DP:GQ:PL    0/1:22,17:39:99:562,0,685
1    203194186    rs2297950    C    T    484.10    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.539;DB;DP=38;Dels=0.0;FS=1.315;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.602;QD=12.74;ReadPosRankSum=-0.095;SNPEFF_AMINO_ACID_CHANGE=G102S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203194176_203194232;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHIT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367229    GT:AD:DP:GQ:PL    0/1:20,18:38:99:514,0,541
1    203317162    rs7543148    C    T    444.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_AMINO_ACID_CHANGE=S60N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203317140_203317340;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FMOD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539467    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:478,36,0
1    203453502    rs2794444    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343110    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    203473044    rs754754    T    C    103.45    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.69;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448911    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:133,0,27
1    203652444    rs1419114    A    G    3055.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=S37;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203651937_203652526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3089,238,0
1    203652683    rs4951369    C    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    203652698    rs4951070    T    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
1    203667409    rs2228445    T    C    1902.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=59.68;MQ0=0;QD=32.81;SNPEFF_AMINO_ACID_CHANGE=L106;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203667285_203667482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    1/1:0,57:58:99:1936,144,0
1    203667577    rs139986068    TA    T    498.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=4;HaplotypeScore=51.6847;IndelType=D;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:540,45,0
1    203677250    rs3753036    G    A    2687.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=59.72;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2720,199,0
1    203679934    rs2032018    A    G    297.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
1    203689936    rs4951112    C    G    418.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:452,33,0
1    203698627    rs2365862    C    T    128.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466407    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
1    203709034    rs955865    A    G    344.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.983;QD=19.16;ReadPosRankSum=0.047;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    0/1:6,12:18:99:375,0,166
1    203709068    rs955866    T    C    205.23    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=15.79;ReadPosRankSum=-0.817;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341360    GT:AD:DP:GQ:PL    0/1:5,8:13:99:235,0,170
1    203742915    rs6697274    G    A    97.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367217    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:130,12,0
1    203743122    rs3820194    G    A    2407.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.63;DB;DP=68;Dels=0.0;FS=3.411;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.63;QD=35.41;ReadPosRankSum=0.917;SNPEFF_AMINO_ACID_CHANGE=S154;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203743003_203743850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367217    GT:AD:DP:GQ:PL    1/1:1,67:68:99:2441,144,0
1    203743653    rs3766748    C    T    1895.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=59.62;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=D331;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203743003_203743850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367217    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1929,147,0
1    203743798    rs41264261    C    T    309.15    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.81;DB;DP=23;Dels=0.0;FS=1.808;HRun=2;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.317;QD=13.44;ReadPosRankSum=1.866;SNPEFF_AMINO_ACID_CHANGE=P380S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203743003_203743850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367217    GT:AD:DP:GQ:PL    0/1:11,12:23:99:339,0,267
1    203786152    rs7555435    A    C    506.16    MQFilter40    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.604;DB;DP=44;Dels=0.0;FS=9.42;HRun=1;HaplotypeScore=0.9734;MQ=30.93;MQ0=8;MQRankSum=1.087;QD=11.5;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537080    GT:AD:DP:GQ:PL    0/1:23,21:44:99:536,0,361
1    203787542    rs35988171    C    T    78.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.6;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332127    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:108,0,31
1    203787700    rs4951260    T    C    1084.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.3;MQ0=0;QD=32.88;SNPEFF_AMINO_ACID_CHANGE=G19;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203787698_203787817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332127    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1118,84,0
1    203797335    rs35073773    A    G    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-1.38;QD=5.43;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332127    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,147
1    203797384    rs36111209    A    G    126.95    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.53;QD=7.93;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332127    GT:AD:DP:GQ:PL    0/1:10,6:16:99:157,0,324
1    203799343    rs12239438    C    T    1752.23    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=4.532;DB;DP=135;Dels=0.0;FS=1.385;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.671;QD=12.98;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480354    GT:AD:DP:GQ:PL    0/1:77,58:135:99:1782,0,2172
1    203800715    rs2275324    A    G    76.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.82;MQ0=0;MQRankSum=0.358;QD=15.38;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480354    GT:AD:DP:GQ:PL    0/1:2,3:5:70.19:107,0,70
1    203800735    rs2275325    G    C    115.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=-0.72;QD=19.28;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480354    GT:AD:DP:GQ:PL    0/1:2,4:6:59.30:146,0,59
1    203803016    rs6694647    A    G    861.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480354    GT:AD:DP:GQ:PL    1/1:0,28:28:66.19:895,66,0
1    203807028    rs34191177    GT    G    383.18    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=3.055;DB;DP=30;FS=2.319;HRun=5;HaplotypeScore=73.5925;IndelType=D;MQ=61.43;MQ0=0;MQRankSum=-0.062;QD=12.77;ReadPosRankSum=0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332127    GT:AD:DP:GQ:PL    0/1:16,14:30:99:422,0,601
1    203807233    rs12078328    T    C    236.72    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.578;DB;DP=27;Dels=0.0;FS=3.9;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.419;QD=8.77;ReadPosRankSum=0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332127    GT:AD:DP:GQ:PL    0/1:16,11:27:99:267,0,580
1    203807273    rs34947847    A    G    352.95    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-0.634;QD=19.61;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332127    GT:AD:DP:GQ:PL    0/1:7,11:18:99:383,0,225
1    203809380    rs13375025    G    A    1210.21    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.634;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=59.68;MQ0=0;MQRankSum=0.478;QD=16.81;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332127    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1240,0,1106
1    203817549    rs12086293    T    C    809.13    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.979;QD=17.22;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453771    GT:AD:DP:GQ:PL    0/1:20,27:47:99:839,0,642
1    203817608    rs12085020    A    G    186.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.69;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453771    GT:AD:DP:GQ:PL    0/1:4,6:10:99:217,0,138
1    203817620    rs12078932    G    C    151.69    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=18.96;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453771    GT:AD:DP:GQ:PL    0/1:3,5:8:98.80:182,0,99
1    203818654    rs11240603    A    C    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453771    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:72,0,71
1    203818973    rs41299639    C    A    831.29    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.48;MQ0=0;MQRankSum=0.707;QD=10.8;ReadPosRankSum=-0.356;SNPEFF_AMINO_ACID_CHANGE=A532;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203818839_203819154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537080    GT:AD:DP:GQ:PL    0/1:47,30:77:99:861,0,1548
1    203819177    rs11808915    T    C    775.15    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DB;DP=43;Dels=0.0;FS=1.345;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.426;QD=18.03;ReadPosRankSum=1.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453771    GT:AD:DP:GQ:PL    0/1:14,29:43:99:805,0,438
1    203819203    rs11240605    A    G    129.39    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=1.076;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.32;MQ0=0;MQRankSum=-0.264;QD=3.81;ReadPosRankSum=-0.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453771    GT:AD:DP:GQ:PL    0/1:26,8:34:99:159,0,825
1    203821200    rs7512877    G    A    780.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.72;MQ0=0;QD=37.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453771    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:814,60,0
1    203821314    rs41264265    G    A    881.19    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.968;DB;DP=76;Dels=0.0;FS=3.623;HRun=0;HaplotypeScore=0.9469;MQ=40.2;MQ0=7;MQRankSum=0.207;QD=11.59;ReadPosRankSum=0.748;SNPEFF_AMINO_ACID_CHANGE=P686;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_203821269_203821797;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZC3H11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537080    GT:AD:DP:GQ:PL    0/1:36,40:76:99:911,0,756
1    203831261    rs11240609    G    A    267.67    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.243;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=14.87;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNRPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414487    GT:AD:DP:GQ:PL    0/1:8,10:18:99:298,0,219
1    203832964    rs71631773    A    G    528.99    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.581;MQ=60.0;MQ0=0;MQRankSum=1.715;QD=21.16;ReadPosRankSum=0.889;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNRPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367208    GT:AD:DP:GQ:PL    0/1:8,17:25:99:559,0,204
1    203834037    .    T    G    40.67    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.202;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.4858;MQ=46.25;MQ0=0;MQRankSum=-2.524;QD=2.39;ReadPosRankSum=2.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNRPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367208    GT:AD:DP:GQ:PL    0/1:7,10:17:70.66:71,0,201
1    203968343    rs6690337    C    T    105.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.017;QD=13.24;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC096645.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390128    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,139
1    204001697    rs10900542    G    C    35.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
1    204002270    rs3915140    T    C    451.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367207    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:484,36,0
1    204006538    rs4951291    T    C    1814.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=31.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367207    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1848,144,0
1    204006597    rs4951039    G    A    2397.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4861;MQ=59.42;MQ0=0;QD=29.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367207    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2430,184,0
1    204010389    rs10437107    G    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367207    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    204082002    rs2293336    C    T    102.29    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.825;QD=7.87;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SOX13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367204    GT:AD:DP:GQ:PL    0/1:9,4:13:99:132,0,258
1    204094902    rs2692010    T    C    452.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SOX13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525258    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:485,36,0
1    204095220    rs1064981    C    T    209.82    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.223;DB;DP=29;Dels=0.0;FS=5.704;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=7.24;ReadPosRankSum=0.408;SNPEFF_AMINO_ACID_CHANGE=G609;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204094986_204096863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SOX13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367204    GT:AD:DP:GQ:PL    0/1:18,11:29:99:240,0,465
1    204103440    rs11240675    A    G    94.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422699    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
1    204103618    rs2293335    G    A    1415.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422699    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1449,108,0
1    204109473    rs11240680    G    A    175.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367197    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
1    204110334    rs10793755    A    G    1375.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=30.56;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_204110153_204110390;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367197    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1408,120,0
1    204115477    rs940652    C    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429525    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
1    204115586    rs940651    G    C    334.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429525    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
1    204115713    rs78859872    A    C    1090.21    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.433;DB;DP=63;Dels=0.0;FS=2.575;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.627;QD=17.3;ReadPosRankSum=0.864;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429525    GT:AD:DP:GQ:PL    0/1:25,38:63:99:1120,0,750
1    204115934    rs2293337    C    T    621.26    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DB;DP=41;Dels=0.0;FS=3.603;HRun=0;HaplotypeScore=0.9947;MQ=59.44;MQ0=0;MQRankSum=0.614;QD=15.15;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429525    GT:AD:DP:GQ:PL    0/1:19,22:41:99:651,0,571
1    204124370    rs3215332    AC    A    366.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=5;HaplotypeScore=39.2645;IndelType=D;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272190    GT:AD:DP:GQ:PL    1/1:1,12:13:36.10:408,36,0
1    204124865    rs2368564    C    T    251.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272190    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:285,21,0
1    204125272    rs3795574    C    A    6040.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=193;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1451;MQ=58.75;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272190    GT:AD:DP:GQ:PL    1/1:0,192:193:99:6041,469,0
1    204125464    rs3839003    T    TCAGACAGA    2009.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=259.7674;IndelType=I;MQ=50.88;MQ0=0;QD=52.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272190    GT:AD:DP:GQ:PL    1/1:18,16:38:63.21:2051,63,0
1    204125509    rs11571088    T    G    409.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.41;MQ0=0;QD=29.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272190    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:442,36,0
1    204128854    rs1464816    T    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272190    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    204130376    rs2272237    G    C    62.89    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.62;QD=4.84;ReadPosRankSum=-1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272190    GT:AD:DP:GQ:PL    0/1:9,4:13:92.89:93,0,290
1    204379617    rs3014626    T    C    3311.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=59.79;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=N218S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204378620_204380332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543650    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3311,253,0
1    204409281    rs3014631    C    G    971.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367187    GT:AD:DP:GQ:PL    1/1:0,28:28:78.23:1005,78,0
1    204410447    rs2999496    A    G    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367187    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    204413297    rs2292459    C    T    627.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.99;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367187    GT:AD:DP:GQ:PL    1/1:0,21:21:54.14:660,54,0
1    204413299    rs2292460    G    A    550.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367187    GT:AD:DP:GQ:PL    1/1:0,18:19:45.15:584,45,0
1    204418889    rs2999492    C    T    416.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=32.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438854    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:450,36,0
1    204418939    rs3014637    C    T    650.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.49;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438854    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:683,57,0
1    204429838    rs2271414    C    G    514.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367184    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:548,42,0
1    204433093    rs2271415    A    C    1734.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367184    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1768,129,0
1    204433511    rs61761695    T    TC    1143.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=1;HaplotypeScore=61.6728;IndelType=I;MQ=60.7;MQ0=0;QD=39.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367184    GT:AD:DP:GQ:PL    1/1:2,27:29:81.27:1186,81,0
1    204434277    rs2942149    T    C    1314.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415899    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1348,102,0
1    204438334    rs1124777    C    T    5396.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_AMINO_ACID_CHANGE=P199;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204437998_204439014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367187    GT:AD:DP:GQ:PL    1/1:0,151:151:99:5397,400,0
1    204438643    rs1553921    G    T    1070.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=34.53;SNPEFF_AMINO_ACID_CHANGE=L96;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204437998_204439014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367187    GT:AD:DP:GQ:PL    1/1:0,31:31:84.26:1104,84,0
1    204495595    rs72381997    G    GT    103.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=90.9153;IndelType=I;MQ=56.03;MQ0=0;MQRankSum=1.377;QD=7.37;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367180    GT:AD:DP:GQ:PL    0/1:6,6:14:3.95:141,0,4
1    204505976    rs35493922    GA    G    1181.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=7;HaplotypeScore=99.5515;IndelType=D;MQ=61.05;MQ0=0;QD=28.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470797    GT:AD:DP:GQ:PL    1/1:1,40:41:99:1223,120,0
1    204506107    rs4245738    C    T    1696.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470797    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1730,129,0
1    204512100    rs4252717    T    C    978.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462012    GT:AD:DP:GQ:PL    1/1:0,36:36:81.25:1011,81,0
1    204512195    rs4252718    A    T    174.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462012    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
1    204515863    rs2290855    C    T    285.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462012    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
1    204516025    rs2290854    A    G    776.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462012    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:809,60,0
1    204518842    rs4245739    C    A    1088.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367179    GT:AD:DP:GQ:PL    1/1:0,34:34:84.24:1121,84,0
1    204586805    rs3789046    G    A    338.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496057    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
1    204587240    rs3747632    G    A    498.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=D627;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204586298_204591333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367175    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:531,42,0
1    204915904    rs2449484    A    G    405.39    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=59.38;MQ0=0;MQRankSum=0.348;QD=10.96;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493914    GT:AD:DP:GQ:PL    0/1:21,16:37:99:435,0,590
1    204915920    rs2490418    T    C    339.75    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.724;QD=11.32;ReadPosRankSum=0.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493914    GT:AD:DP:GQ:PL    0/1:16,14:30:99:370,0,477
1    204915939    rs10157992    T    C    390.59    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=29;Dels=0.0;FS=1.664;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.502;QD=13.47;ReadPosRankSum=0.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493914    GT:AD:DP:GQ:PL    0/1:15,14:29:99:421,0,484
1    204917680    rs2068667    C    T    673.50    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=55;Dels=0.0;FS=10.08;HRun=1;HaplotypeScore=0.9947;MQ=59.24;MQ0=0;MQRankSum=1.452;QD=12.25;ReadPosRankSum=-0.829;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493914    GT:AD:DP:GQ:PL    0/1:29,26:55:99:703,0,981
1    204921312    rs113463555    C    T    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,102
1    204926980    rs7519658    C    T    490.23    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.293;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6634;MQ=59.6;MQ0=0;MQRankSum=-0.092;QD=8.45;ReadPosRankSum=-1.463;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505079    GT:AD:DP:GQ:PL    0/1:38,20:58:99:520,0,1163
1    204931077    rs12740109    G    A    276.78    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=3.216;DB;DP=35;Dels=0.0;FS=2.707;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.693;QD=7.91;ReadPosRankSum=-0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    0/1:24,11:35:99:307,0,731
1    204943285    rs2595945    A    T    182.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:216,18,0
1    204943362    rs147248519    C    T    326.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.642;DB;DP=22;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.197;QD=14.82;ReadPosRankSum=0.854;SNPEFF_AMINO_ACID_CHANGE=Y432;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204943307_204943418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430393    GT:AD:DP:GQ:PL    0/1:11,11:22:99:356,0,289
1    204943947    rs2246662    C    A    539.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.969;DB;DP=56;Dels=0.0;FS=2.795;HRun=3;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.681;QD=9.64;ReadPosRankSum=-0.224;SNPEFF_AMINO_ACID_CHANGE=V505;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204943785_204943951;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430393    GT:AD:DP:GQ:PL    0/1:32,24:56:99:570,0,1035
1    204943991    rs2246661    C    T    106.52    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.018;DB;DP=32;Dels=0.0;FS=2.696;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.084;QD=3.33;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514644    GT:AD:DP:GQ:PL    0/1:23,9:32:99:137,0,686
1    204943992    rs2794861    A    G    1076.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514644    GT:AD:DP:GQ:PL    1/1:0,32:32:90.22:1110,90,0
1    204945618    rs12124296    G    A    547.94    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.127;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=2.313;QD=15.22;ReadPosRankSum=0.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514644    GT:AD:DP:GQ:PL    0/1:17,19:36:99:578,0,539
1    204948793    .    C    A    227.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.511;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.776;QD=11.39;ReadPosRankSum=-1.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403080    GT:AD:DP:GQ:PL    0/1:10,10:20:99:258,0,345
1    204955319    rs11240324    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471392    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
1    204962718    rs2841628    A    G    76.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468328    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:108,9,0
1    204966170    rs16854920    T    C    258.60    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.755;QD=13.61;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    0/1:9,10:19:99:289,0,315
1    204966428    rs2802808    C    G    1161.44    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=4.889;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8327;MQ=59.31;MQ0=0;MQRankSum=-0.454;QD=17.33;ReadPosRankSum=0.809;SNPEFF_AMINO_ACID_CHANGE=I1063M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204966323_204966534;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367171    GT:AD:DP:GQ:PL    0/1:31,36:67:99:1191,0,658
1    204966690    rs2794858    G    A    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
1    204978533    rs1530745    A    G    1437.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DB;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=59.52;MQ0=0;MQRankSum=0.794;QD=29.95;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=A1045;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_204978524_204978534;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    1/1:1,47:48:86.39:1471,86,0
1    204978544    rs140979154    G    T    492.51    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.322;DB;DP=52;Dels=0.0;FS=6.253;HRun=0;HaplotypeScore=0.5784;MQ=59.56;MQ0=0;MQRankSum=0.692;QD=9.47;ReadPosRankSum=-0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    0/1:33,19:52:99:523,0,1035
1    204978643    rs78993506    C    A    756.85    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=60;Dels=0.0;FS=3.662;HRun=1;HaplotypeScore=2.65;MQ=59.62;MQ0=0;MQRankSum=1.874;QD=12.61;ReadPosRankSum=0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    0/1:32,28:60:99:787,0,1015
1    204985226    rs868449    A    C    153.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFASC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295776    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:186,15,0
1    205028581    rs2305278    C    G    31.66    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.254;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=2.26;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532366    GT:AD:DP:GQ:PL    0/1:10,4:14:61.65:62,0,368
1    205028883    rs35182846    CAG    C    348.28    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=3.065;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=76.0289;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.666;QD=19.35;ReadPosRankSum=-1.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532366    GT:AD:DP:GQ:PL    0/1:8,10:18:99:387,0,396
1    205028915    rs10793725    C    T    148.87    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=13.53;ReadPosRankSum=0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532366    GT:AD:DP:GQ:PL    0/1:5,6:11:99:179,0,137
1    205030862    rs41264869    C    T    568.86    PASS    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.03;QD=22.75;ReadPosRankSum=0.878;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532366    GT:AD:DP:GQ:PL    0/1:7,18:25:99:599,0,212
1    205031116    rs2229866    C    T    280.07    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=22;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=-1.398;QD=12.73;ReadPosRankSum=1.474;SNPEFF_AMINO_ACID_CHANGE=P366L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205030993_205031129;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331830    GT:AD:DP:GQ:PL    0/1:10,12:22:99:310,0,300
1    205031449    rs7545698    A    G    453.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532366    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:487,36,0
1    205031744    rs2242001    G    A    214.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=17.87;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530117    GT:AD:DP:GQ:PL    0/1:4,8:12:99:244,0,131
1    205031769    rs2242000    G    A    197.28    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.386;QD=19.73;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530117    GT:AD:DP:GQ:PL    0/1:3,7:10:95.14:227,0,95
1    205033283    rs1470637    G    A    361.29    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.538;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.147;QD=13.38;ReadPosRankSum=1.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530117    GT:AD:DP:GQ:PL    0/1:15,12:27:99:391,0,403
1    205033374    rs2305277    T    C    1372.74    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.158;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.748;MQ=59.78;MQ0=0;MQRankSum=0.505;QD=12.95;ReadPosRankSum=0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530117    GT:AD:DP:GQ:PL    0/1:58,48:106:99:1403,0,1982
1    205034488    rs4460698    A    G    226.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.03;MQ0=0;MQRankSum=-0.153;QD=9.43;ReadPosRankSum=0.704;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527340    GT:AD:DP:GQ:PL    0/1:16,8:24:99:256,0,577
1    205038731    rs2305275    C    T    367.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=30.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527340    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:401,30,0
1    205039288    rs12134724    T    C    81.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530594    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
1    205041015    rs11240349    G    A    122.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=12.29;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331830    GT:AD:DP:GQ:PL    0/1:5,5:10:99:153,0,103
1    205041465    rs6662930    T    C    37.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331830    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:68,0,24
1    205041542    rs3903399    T    C    94.53    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-2.219;QD=10.5;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331830    GT:AD:DP:GQ:PL    0/1:4,5:9:99:125,0,119
1    205042115    rs56338794    C    T    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525433    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
1    205042797    .    G    A    214.86    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=14.32;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=M1009I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205042784_205047627;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331830    GT:AD:DP:GQ:PL    0/1:8,7:15:99:245,0,199
1    205042939    rs17416088    C    T    61.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525433    GT:AD:DP:GQ:PL    0/1:6,4:10:91.31:91,0,169
1    205052939    rs4950979    G    A    2858.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_AMINO_ACID_CHANGE=L170;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205052258_205053645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367167    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2891,211,0
1    205053219    rs4951168    C    T    1418.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=35.47;SNPEFF_AMINO_ACID_CHANGE=R77Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205052258_205053645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM81;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367167    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1452,105,0
1    205065733    rs11577406    G    T    277.41    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=24;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.259;QD=11.56;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264515    GT:AD:DP:GQ:PL    0/1:14,10:24:99:307,0,447
1    205068001    .    T    G    77.09    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DP=25;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.4194;MQ=44.68;MQ0=0;MQRankSum=-2.281;QD=3.08;ReadPosRankSum=2.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264515    GT:AD:DP:GQ:PL    0/1:9,16:25:99:107,0,164
1    205070573    rs11240358    G    A    137.68    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.47;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484379    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,171
1    205074018    rs6683762    T    C    483.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484379    GT:AD:DP:GQ:PL    1/1:0,15:15:45.09:516,45,0
1    205074019    rs6692170    G    A    150.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.993;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=9.41;ReadPosRankSum=-0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484379    GT:AD:DP:GQ:PL    0/1:8,8:16:99:181,0,225
1    205074424    rs3738155    C    T    65.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.33;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264515    GT:AD:DP:GQ:PL    0/1:6,3:9:95.97:96,0,194
1    205090885    rs61822619    C    G    494.17    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=21.49;ReadPosRankSum=0.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264515    GT:AD:DP:GQ:PL    0/1:7,16:23:99:524,0,226
1    205129319    rs1062715    G    A    1530.22    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=122;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=0.418;QD=12.54;ReadPosRankSum=0.26;SNPEFF_AMINO_ACID_CHANGE=F676;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205129242_205129398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSTYK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367161    GT:AD:DP:GQ:PL    0/1:65,57:122:99:1560,0,2079
1    205130413    rs3851294    A    G    3302.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.53;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=C641R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205130386_205130515;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSTYK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367161    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3303,253,0
1    205131059    rs10631913    G    GAC    395.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=30.9105;IndelType=I;MQ=61.25;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSTYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367160    GT:AD:DP:GQ:PL    1/1:3,9:12:27.09:438,27,0
1    205133169    rs61822658    T    C    149.21    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.858;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=9.33;ReadPosRankSum=-1.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSTYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367160    GT:AD:DP:GQ:PL    0/1:9,7:16:99:179,0,314
1    205138321    rs35845538    G    C    624.54    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=35;Dels=0.0;FS=1.344;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=-0.745;QD=17.84;ReadPosRankSum=-0.149;SNPEFF_AMINO_ACID_CHANGE=L432V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205138291_205138960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSTYK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367160    GT:AD:DP:GQ:PL    0/1:16,19:35:99:655,0,527
1    205197602    rs79431750    C    T    102.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495538    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,141
1    205225457    rs1172147    G    A    297.02    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.5;DB;DP=32;Dels=0.0;FS=1.694;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=1.585;QD=9.0;ReadPosRankSum=1.669;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000367159    GT:AD:DP:GQ:PL    0/1:22,10:32:99:327,0,585
1    205238275    rs1768586    A    G    788.31    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.434;DB;DP=51;Dels=0.0;FS=24.359;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.03;QD=15.46;ReadPosRankSum=-0.03;SNPEFF_AMINO_ACID_CHANGE=A119;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205238078_205238686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367159    GT:AD:DP:GQ:PL    0/1:21,30:51:99:818,0,671
1    205238530    rs1779411    C    T    263.75    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.312;DB;DP=27;Dels=0.0;FS=1.68;HRun=0;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;MQRankSum=1.768;QD=9.77;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=G160;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205238078_205239012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329800    GT:AD:DP:GQ:PL    0/1:13,14:27:99:294,0,356
1    205239031    rs1668870    C    G    290.55    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.071;DB;DP=34;Dels=0.0;FS=8.759;HRun=0;HaplotypeScore=0.6651;MQ=59.32;MQ0=0;MQRankSum=0.532;QD=8.55;ReadPosRankSum=0.319;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367159    GT:AD:DP:GQ:PL    0/1:21,13:34:99:321,0,721
1    205239121    rs1768585    C    G    190.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=21.14;ReadPosRankSum=-1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367159    GT:AD:DP:GQ:PL    0/1:3,6:9:85.55:220,0,86
1    205240251    rs1668867    C    T    764.24    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.342;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.34;MQ0=0;MQRankSum=1.909;QD=21.84;ReadPosRankSum=-0.019;SNPEFF_AMINO_ACID_CHANGE=Y322;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205240248_205240383;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329800    GT:AD:DP:GQ:PL    0/1:10,25:35:99:794,0,297
1    205240913    rs9659978    A    G    260.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367159    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:293,24,0
1    205272926    rs1106201    C    T    253.11    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.226;DB;DP=30;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=1.5592;MQ=59.23;MQ0=0;MQRankSum=0.453;QD=8.44;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=L513;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205271187_205273641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367157    GT:AD:DP:GQ:PL    0/1:21,9:30:99:283,0,629
1    205272983    rs1106202    C    G    389.94    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=30;Dels=0.0;FS=1.485;HRun=1;HaplotypeScore=0.5784;MQ=59.23;MQ0=0;MQRankSum=-0.153;QD=13.0;ReadPosRankSum=0.327;SNPEFF_AMINO_ACID_CHANGE=L494;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205271187_205273641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367157    GT:AD:DP:GQ:PL    0/1:16,14:30:99:420,0,538
1    205274174    rs10793728    A    G    390.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367157    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:424,36,0
1    205275061    rs4951194    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367157    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    205275206    rs4951195    A    T    305.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=13.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367157    GT:AD:DP:GQ:PL    1/1:0,22:22:35.97:338,36,0
1    205275207    rs4951196    G    T    304.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=13.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367157    GT:AD:DP:GQ:PL    1/1:0,22:22:35.97:338,36,0
1    205275421    rs4951197    A    G    2476.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=G195;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205275316_205275435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367157    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2509,190,0
1    205290794    rs3738746    G    A    168.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=16.81;ReadPosRankSum=0.633;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_205290526_205290883;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367157    GT:AD:DP:GQ:PL    0/1:4,6:10:99:198,0,136
1    205306445    rs72747066    C    T    194.33    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=16;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=12.15;ReadPosRankSum=0.318;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460687    GT:AD:DP:GQ:PL    0/1:9,7:16:99:224,0,326
1    205307789    rs11240441    G    A    393.49    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.076;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.942;QD=24.59;ReadPosRankSum=0.673;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491471    GT:AD:DP:GQ:PL    0/1:3,13:16:73.11:423,0,73
1    205308335    rs1105385    G    A    318.56    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.188;DB;DP=19;Dels=0.0;FS=2.029;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.784;QD=16.77;ReadPosRankSum=-2.106;SNPEFF_AMINO_ACID_CHANGE=F135;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205308322_205308537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC8A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537168    GT:AD:DP:GQ:PL    0/1:8,11:19:99:349,0,207
1    205308368    rs1105387    C    T    379.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.974;DB;DP=26;Dels=0.0;FS=1.58;HRun=0;HaplotypeScore=1.8614;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=14.6;ReadPosRankSum=0.923;SNPEFF_AMINO_ACID_CHANGE=R124;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205308322_205308537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC8A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537168    GT:AD:DP:GQ:PL    0/1:13,13:26:99:409,0,435
1    205308591    rs1105388    C    T    102.30    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.835;DB;DP=12;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=8.53;ReadPosRankSum=-0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491471    GT:AD:DP:GQ:PL    0/1:8,4:12:99:132,0,225
1    205312280    rs7549293    C    G    525.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.84;MQ0=0;QD=26.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491471    GT:AD:DP:GQ:PL    1/1:0,20:20:48.13:559,48,0
1    205312848    rs7526701    G    A    68.01    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.6;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537168    GT:AD:DP:GQ:PL    0/1:2,3:5:51.40:98,0,51
1    205385498    rs6688045    C    T    1098.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367149    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1132,84,0
1    205388687    rs913727    T    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367149    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    205495392    rs2297837    A    G    806.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443813    GT:AD:DP:GQ:PL    1/1:0,24:24:69.17:839,69,0
1    205495889    rs34804445    GCT    G    1268.37    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=4.752;DB;DP=76;FS=0.872;HRun=0;HaplotypeScore=300.6097;IndelType=D;MQ=60.71;MQ0=0;MQRankSum=0.98;QD=16.69;ReadPosRankSum=-0.281;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443813    GT:AD:DP:GQ:PL    0/1:41,35:76:99:1307,0,2066
1    205495976    rs1544154    A    G    1624.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.59;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443813    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1658,132,0
1    205548956    rs112374673    G    A    891.90    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.075;DB;DP=64;Dels=0.0;FS=0.995;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.309;QD=13.94;ReadPosRankSum=-0.403;SNPEFF_AMINO_ACID_CHANGE=R103H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205548879_205549077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MFSD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367147    GT:AD:DP:GQ:PL    0/1:31,33:64:99:922,0,913
1    205552864    rs10494871    G    A    37.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MFSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367147    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
1    205555145    rs7531623    G    A    202.39    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.457;DB;DP=23;Dels=0.0;FS=4.506;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.555;QD=8.8;ReadPosRankSum=2.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MFSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367147    GT:AD:DP:GQ:PL    0/1:14,8:23:99:232,0,364
1    205568442    rs2282452    G    A    246.88    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=15.43;ReadPosRankSum=1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MFSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471425    GT:AD:DP:GQ:PL    0/1:7,9:16:99:277,0,245
1    205628616    rs137949511    C    T    286.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.44;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=17.9;ReadPosRankSum=0.813;SNPEFF_AMINO_ACID_CHANGE=V470I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205626979_205628799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC45A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367145    GT:AD:DP:GQ:PL    0/1:6,10:16:99:316,0,163
1    205630893    rs3761916    A    G    223.87    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.291;DB;DP=26;Dels=0.0;FS=4.682;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.29;QD=8.61;ReadPosRankSum=-0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC45A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367145    GT:AD:DP:GQ:PL    0/1:16,10:26:99:254,0,589
1    205696671    rs1772147    G    A    89.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCKS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264531    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    205739396    rs823139    T    G    317.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414729    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:351,27,0
1    205740403    rs823140    A    G    244.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=45.47;MQ0=0;QD=27.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533111    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:278,24,0
1    205740426    rs35188989    C    CA    206.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DB;DP=19;FS=0.0;HRun=14;HaplotypeScore=258.8657;IndelType=I;MQ=46.35;MQ0=0;MQRankSum=-0.456;QD=10.86;ReadPosRankSum=-0.274;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533111    GT:AD:DP:GQ:PL    1/1:6,12:19:2.56:245,3,0
1    205741816    rs823142    A    T    860.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000235932    GT:AD:DP:GQ:PL    1/1:0,22:23:66.22:894,66,0
1    205764640    rs823156    G    A    500.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367137    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:534,39,0
1    205766159    rs5780304    CA    C    590.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=3;HaplotypeScore=44.4976;IndelType=D;MQ=58.71;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367137    GT:AD:DP:GQ:PL    1/1:1,17:18:51.16:633,51,0
1    205768309    rs4396169    C    T    395.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367137    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:428,33,0
1    205779231    rs11240569    G    A    1067.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2426;MQ=58.55;MQ0=0;QD=33.37;SNPEFF_AMINO_ACID_CHANGE=T113;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205779198_205780215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367137    GT:AD:DP:GQ:PL    1/1:0,32:32:81.27:1101,81,0
1    205798033    rs823085    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PM20D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367136    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    205814485    rs1104899    G    A    2610.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=R153W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205814453_205814685;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PM20D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367136    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2643,193,0
1    205814497    rs1891460    T    C    2095.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=I149V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_205814453_205814685;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PM20D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367136    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2129,174,0
1    205816893    rs112268616    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=23.68;MQ0=1;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PM20D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367136    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
1    205884646    rs113727128    CTGTG    C    201.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=70.8465;IndelType=D;MQ=58.2;MQ0=0;QD=15.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340781    GT:AD:DP:GQ:PL    1/1:8,5:13:15.05:243,15,0
1    205886381    rs11240591    C    T    2225.19    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.497;DB;DP=176;Dels=0.0;FS=3.785;HRun=0;HaplotypeScore=4.6708;MQ=58.81;MQ0=0;MQRankSum=0.947;QD=12.64;ReadPosRankSum=-0.981;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340781    GT:AD:DP:GQ:PL    0/1:93,82:176:99:2255,0,2693
1    205888143    rs11240593    G    C    2533.67    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.069;DB;DP=170;DS;Dels=0.0;FS=0.685;HRun=0;HaplotypeScore=2.8904;MQ=59.75;MQ0=0;MQRankSum=0.319;QD=14.9;ReadPosRankSum=-0.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461505    GT:AD:DP:GQ:PL    0/1:81,89:170:99:2564,0,2336
1    205888272    rs7366689    T    C    755.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461505    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:788,63,0
1    205890679    rs12759719    T    C    239.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=26.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461505    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:272,21,0
1    205892411    rs3811427    T    C    679.38    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=49;Dels=0.0;FS=6.846;HRun=0;HaplotypeScore=0.9832;MQ=59.53;MQ0=0;MQRankSum=0.062;QD=13.86;ReadPosRankSum=2.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469392    GT:AD:DP:GQ:PL    0/1:25,24:49:99:709,0,820
1    205892415    rs3811426    C    T    775.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.649;DB;DP=52;Dels=0.0;FS=11.273;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.97;QD=14.92;ReadPosRankSum=1.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469392    GT:AD:DP:GQ:PL    0/1:26,26:52:99:806,0,824
1    205893699    rs9438402    T    C    73.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469392    GT:AD:DP:GQ:PL    0/1:3,4:7:99:104,0,109
1    205896235    rs11240594    G    A    315.45    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.165;QD=14.34;ReadPosRankSum=-0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469392    GT:AD:DP:GQ:PL    0/1:10,12:22:99:345,0,345
1    205896475    rs7366204    C    T    858.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.7;MQ0=0;QD=34.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469392    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:892,69,0
1    205896948    rs3811424    A    G    724.46    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=57;Dels=0.0;FS=2.619;HRun=0;HaplotypeScore=0.9989;MQ=59.27;MQ0=0;MQRankSum=0.328;QD=12.71;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340781    GT:AD:DP:GQ:PL    0/1:29,28:57:99:754,0,906
1    205897876    rs12568779    C    T    132.48    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=10.19;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340781    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,260
1    205901287    rs11240596    T    A    110.23    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.43;MQ0=0;MQRankSum=-1.0;QD=9.19;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340781    GT:AD:DP:GQ:PL    0/1:7,5:12:99:140,0,252
1    205901788    rs3811423    G    T    41.08    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.567;QD=2.28;ReadPosRankSum=0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340781    GT:AD:DP:GQ:PL    0/1:15,3:18:71.07:71,0,479
1    206145248    .    G    A    32.45    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.98;MQ0=3;MQRankSum=0.727;QD=4.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM72A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341209    GT:AD:DP:GQ:PL    1/1:4,3:7:6:64,6,0
1    206516159    .    C    T    353.92    MQFilter40    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.12;MQ0=107;MQRankSum=-0.651;QD=2.72;ReadPosRankSum=-0.093;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414359    GT:AD:DP:GQ:PL    0/1:81,49:130:99:384,0,251
1    206516261    .    C    T    442.26    MQFilter40    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.491;DP=206;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5731;MQ=16.29;MQ0=154;MQRankSum=0.875;QD=2.15;ReadPosRankSum=0.414;SNPEFF_AMINO_ACID_CHANGE=R22W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206516198_206516362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414359    GT:AD:DP:GQ:PL    0/1:138,68:206:99:472,0,1036
1    206566173    .    G    A    288.76    MQFilter40    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.062;DP=104;Dels=0.0;FS=2.026;HRun=0;HaplotypeScore=0.734;MQ=37.16;MQ0=0;MQRankSum=-1.127;QD=2.78;ReadPosRankSum=0.612;SNPEFF_AMINO_ACID_CHANGE=R119H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206566046_206566261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414359    GT:AD:DP:GQ:PL    0/1:79,25:104:99:319,0,1814
1    206566860    rs33922845    TA    T    67.16    QDFilter2    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=4.755;DB;DP=96;FS=5.502;HRun=11;HaplotypeScore=333.5031;IndelType=D;MQ=49.76;MQ0=8;MQRankSum=-4.675;QD=0.61;ReadPosRankSum=-3.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:84,22:96:99:106,0,1978
1    206566904    rs2919105    T    C    2179.66    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=6.657;DB;DP=211;Dels=0.0;FS=27.526;HRun=1;HaplotypeScore=6.8133;MQ=49.77;MQ0=10;MQRankSum=-6.169;QD=10.33;ReadPosRankSum=-0.413;SNPEFF_AMINO_ACID_CHANGE=R149;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206566902_206567030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414359    GT:AD:DP:GQ:PL    0/1:119,92:211:99:2210,0,3541
1    206567100    rs2480377    C    T    1088.11    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=7.518;DB;DP=163;DS;Dels=0.0;FS=10.543;HRun=0;HaplotypeScore=2.6078;MQ=56.79;MQ0=3;MQRankSum=1.303;QD=6.68;ReadPosRankSum=0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:118,45:163:99:1118,0,3323
1    206567165    rs2480376    T    A    496.34    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.186;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.45;MQ0=1;MQRankSum=0.283;QD=7.3;ReadPosRankSum=0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:49,19:68:99:526,0,1700
1    206575141    rs77896938    A    C    145.33    MQFilter40    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.413;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=18.13;MQ0=10;MQRankSum=-0.638;QD=3.93;ReadPosRankSum=0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:17,20:37:99:175,0,127
1    206580084    rs143665212    C    G    399.56    MQFilter40    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=1.455;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.16;MQ0=6;MQRankSum=-0.461;QD=10.25;ReadPosRankSum=0.497;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:16,23:39:99:430,0,239
1    206603535    rs2297539    G    A    5144.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7174;MQ=59.88;MQ0=0;MQRankSum=-1.192;QD=32.98;ReadPosRankSum=0.54;SNPEFF_AMINO_ACID_CHANGE=L120;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206603512_206603572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439126    GT:AD:DP:GQ:PL    1/1:1,155:156:99:5144,376,0
1    206623685    rs12725078    G    T    454.56    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.983;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.183;QD=12.99;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:20,15:35:99:485,0,680
1    206623866    rs11809494    C    T    371.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.468;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.749;QD=14.84;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:10,15:25:99:401,0,174
1    206623952    rs2483060    T    C    58.36    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=6.48;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:5,4:9:88.36:88,0,157
1    206626607    rs11120575    G    A    584.02    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=42;Dels=0.0;FS=4.531;HRun=0;HaplotypeScore=2.5775;MQ=58.55;MQ0=0;MQRankSum=1.347;QD=13.91;ReadPosRankSum=1.247;SNPEFF_AMINO_ACID_CHANGE=L361;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206626546_206626726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439126    GT:AD:DP:GQ:PL    0/1:22,20:42:99:614,0,670
1    206626779    rs2483059    A    G    173.23    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=14.44;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:5,7:12:99:203,0,167
1    206626828    rs2483058    C    G    160.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=17.78;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:3,6:9:80.44:190,0,80
1    206634610    rs141859199    G    A    476.47    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.513;DB;DP=48;Dels=0.0;FS=1.295;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-1.004;QD=9.93;ReadPosRankSum=2.588;SNPEFF_AMINO_ACID_CHANGE=A881T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206634382_206637783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414007    GT:AD:DP:GQ:PL    0/1:27,20:48:99:506,0,791
1    206647742    rs1539242    A    G    897.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=Q52;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206647674_206647814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367120    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:930,72,0
1    206647787    rs1539243    T    C    525.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_AMINO_ACID_CHANGE=I67;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206647674_206647814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367120    GT:AD:DP:GQ:PL    1/1:0,21:21:48.12:558,48,0
1    206648378    rs1059704    G    A    632.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367120    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:666,48,0
1    206665896    rs2336940    C    G    1414.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.82;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=G213A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206664449_206666409;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf147;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367119    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1448,111,0
1    206667441    rs2184030    G    A    208.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367119    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
1    206670827    rs12754274    G    T    345.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367120    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:379,27,0
1    206680983    rs2095124    A    C    138.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_AMINO_ACID_CHANGE=L16;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206680879_206681392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338603    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:171,12,0
1    206758077    rs4418597    T    A    528.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304534    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:562,48,0
1    206759975    rs10779488    G    A    107.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=11.89;ReadPosRankSum=-1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EIF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367114    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,175
1    206760474    rs7541244    T    C    53.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EIF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271764    GT:AD:DP:GQ:PL    1/1:0,3:3:9:86,9,0
1    206769047    rs11584983    T    C    1166    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.029;DB;DP=64;Dels=0.0;FS=6.659;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-0.531;QD=18.22;ReadPosRankSum=0.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EIF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468891    GT:AD:DP:GQ:PL    0/1:25,39:64:99:1196,0,761
1    206772753    rs4845116    A    G    1594.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=59.01;MQ0=0;MQRankSum=1.582;QD=33.92;ReadPosRankSum=-1.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EIF2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437518    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1627,100,0
1    206773659    rs6662929    A    G    963.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_AMINO_ACID_CHANGE=P178;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206773617_206773662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EIF2D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367114    GT:AD:DP:GQ:PL    1/1:0,33:33:75.24:997,75,0
1    206810946    rs17013271    C    T    266.65    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.698;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.023;QD=11.59;ReadPosRankSum=0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367106    GT:AD:DP:GQ:PL    0/1:13,10:23:99:297,0,442
1    206901938    rs71633601    G    A    38.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.72;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294981    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:69,0,32
1    206903256    rs75470033    G    A    428.45    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.995;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.343;QD=12.98;ReadPosRankSum=0.994;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493447    GT:AD:DP:GQ:PL    0/1:18,15:33:99:458,0,536
1    206904464    rs10863805    C    T    500.43    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.85;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=11.37;ReadPosRankSum=1.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493447    GT:AD:DP:GQ:PL    0/1:24,20:44:99:530,0,754
1    206905043    rs4073250    C    T    1440.68    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=3.156;DB;DP=133;Dels=0.0;FS=5.481;HRun=0;HaplotypeScore=0.9996;MQ=59.51;MQ0=0;MQRankSum=0.523;QD=10.83;ReadPosRankSum=-0.131;SNPEFF_AMINO_ACID_CHANGE=T317;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_206904985_206905070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294981    GT:AD:DP:GQ:PL    0/1:81,52:133:99:1471,0,2262
1    206943351    rs3024494    T    C    210.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423557    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:243,21,0
1    206944233    rs1554286    A    G    1661.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423557    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1695,132,0
1    206944645    rs1518111    T    C    919.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.99;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.25;MQ0=0;MQRankSum=-0.619;QD=29.65;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423557    GT:AD:DP:GQ:PL    1/1:1,29:31:34.60:952,35,0
1    206944861    rs1518110    A    C    125.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423557    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
1    206945381    rs2222202    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423557    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    207009910    rs2243170    T    C    654.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270218    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:687,54,0
1    207014472    rs2243188    A    C    309.94    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.415;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.154;QD=20.66;ReadPosRankSum=0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476097    GT:AD:DP:GQ:PL    0/1:4,11:15:99:340,0,119
1    207040577    rs2981573    G    A    44.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=11.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367096    GT:AD:DP:GQ:PL    0/1:2,2:4:30.28:74,0,30
1    207040659    rs2232360    G    A    190.30    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=10.02;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367096    GT:AD:DP:GQ:PL    0/1:11,8:19:99:220,0,402
1    207072959    rs1150255    C    T    95.68    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.63;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367091    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,182
1    207073491    rs1150257    T    C    91.06    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.421;QD=10.12;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367091    GT:AD:DP:GQ:PL    0/1:5,4:9:99:121,0,138
1    207074905    rs1150258    T    C    455.27    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.827;QD=17.51;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=Y124H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207074839_207074997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294984    GT:AD:DP:GQ:PL    0/1:8,18:26:99:485,0,258
1    207086969    rs291083    A    G    109.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.64;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530505    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,140
1    207087435    rs167082    C    T    994.74    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=5.864;DB;DP=71;Dels=0.0;FS=4.519;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=1.755;QD=14.01;ReadPosRankSum=-0.639;SNPEFF_AMINO_ACID_CHANGE=S14;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207087104_207087439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAIM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367091    GT:AD:DP:GQ:PL    0/1:34,37:71:99:1025,0,911
1    207195779    rs2842726    A    G    470.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_AMINO_ACID_CHANGE=S198P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207194040_207196825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf116;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461135    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:504,39,0
1    207225266    rs4844372    T    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411990    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    207235954    rs2075863    G    A    3411.93    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.155;DB;DP=230;Dels=0.0;FS=1.055;HRun=0;HaplotypeScore=5.1116;MQ=60.0;MQ0=0;MQRankSum=-0.432;QD=14.83;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367079    GT:AD:DP:GQ:PL    0/1:107,121:230:99:3412,0,2995
1    207237233    rs57138984    G    GGGGTGTGTGTGTGTGT    2130.50    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.839;DB;DP=60;FS=3.477;HRun=0;HaplotypeScore=687.6804;IndelType=I;MQ=57.99;MQ0=0;MQRankSum=0.845;QD=35.51;ReadPosRankSum=-0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464777    GT:AD:DP:GQ:PL    0/1:34,12:60:99:2170,0,2421
1    207238419    rs72741390    C    T    451.21    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.161;DB;DP=29;Dels=0.0;FS=5.904;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=15.56;ReadPosRankSum=1.264;SNPEFF_AMINO_ACID_CHANGE=N149;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207238381_207238505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545806    GT:AD:DP:GQ:PL    0/1:15,14:29:99:481,0,379
1    207241440    rs113179854    A    AGTGTGTGTGT    792.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=109.2606;IndelType=I;MQ=51.42;MQ0=0;MQRankSum=-2.573;QD=49.54;ReadPosRankSum=-1.838;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464777    GT:AD:DP:GQ:PL    0/1:8,5:16:99:832,0,627
1    207245045    rs11120137    T    C    43.76    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=4.38;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367079    GT:AD:DP:GQ:PL    0/1:7,3:10:73.75:74,0,259
1    207262980    rs12711513    T    G    266.92    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=14.05;ReadPosRankSum=-0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243611    GT:AD:DP:GQ:PL    0/1:10,9:19:99:297,0,364
1    207263829    rs6690037    A    G    524.75    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.494;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.613;QD=10.5;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243611    GT:AD:DP:GQ:PL    0/1:26,23:49:99:555,0,863
1    207269919    rs8942    C    T    203.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=21;Dels=0.0;FS=7.761;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.964;QD=9.67;ReadPosRankSum=1.659;SNPEFF_AMINO_ACID_CHANGE=N153;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207269867_207269960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367076    GT:AD:DP:GQ:PL    0/1:12,9:21:99:233,0,357
1    207286381    rs55867570    C    A    409.85    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.339;DB;DP=41;Dels=0.0;FS=1.171;HRun=5;HaplotypeScore=0.9734;MQ=59.44;MQ0=0;MQRankSum=-0.284;QD=10.0;ReadPosRankSum=0.582;SNPEFF_AMINO_ACID_CHANGE=P4Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207286346_207286512;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367070    GT:AD:DP:GQ:PL    0/1:20,21:41:99:440,0,577
1    207288897    rs12031629    T    C    228.63    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=13.45;ReadPosRankSum=-0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424088    GT:AD:DP:GQ:PL    0/1:7,9:17:99:259,0,247
1    207297484    rs2842707    G    C    1178.19    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=6.353;DB;DP=79;Dels=0.0;FS=0.972;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=1.744;QD=14.91;ReadPosRankSum=-1.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421786    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1208,0,1068
1    207297680    rs1126618    T    C    1644.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.83;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=G225;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207297520_207297711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367070    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1677,135,0
1    207300259    rs2491393    A    G    1116.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.03;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421786    GT:AD:DP:GQ:PL    1/1:0,30:30:90.24:1149,90,0
1    207304900    rs4844573    T    C    799.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.76;SNPEFF_AMINO_ACID_CHANGE=I300T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207304891_207305085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4BPA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367070    GT:AD:DP:GQ:PL    1/1:0,25:26:60.19:833,60,0
1    207495427    rs7533852    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314754    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    207500293    rs4844591    C    T    322.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314754    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:356,30,0
1    207504669    rs2184476    G    A    1176.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314754    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1209,93,0
1    207504748    rs1507757    C    A    250.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314754    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:283,21,0
1    207510289    rs2490257    T    C    325.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314754    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:359,27,0
1    207510548    rs10746462    A    G    235.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314754    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:268,21,0
1    207510596    rs113231892    G    A    454.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314754    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:487,36,0
1    207639695    rs311311    C    G    76.46    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=8.5;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367057    GT:AD:DP:GQ:PL    0/1:4,5:9:99:106,0,148
1    207640345    rs1032980    G    T    246.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.835;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.536;QD=20.5;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479186    GT:AD:DP:GQ:PL    0/1:4,8:12:99:276,0,131
1    207641840    rs2063143    C    T    358.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.606;QD=14.94;ReadPosRankSum=0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479186    GT:AD:DP:GQ:PL    0/1:12,12:24:99:389,0,384
1    207642295    rs1507764    G    A    420.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=33;Dels=0.0;FS=3.732;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.127;QD=12.75;ReadPosRankSum=-1.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479186    GT:AD:DP:GQ:PL    0/1:18,15:33:99:451,0,595
1    207643949    rs10863322    G    A    79.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=13.19;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479186    GT:AD:DP:GQ:PL    0/1:2,4:6:65.39:109,0,65
1    207645956    rs9429936    C    A    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475194    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,112
1    207646322    rs1048971    G    A    645.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.473;DB;DP=55;Dels=0.0;FS=2.347;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.484;QD=11.74;ReadPosRankSum=-0.625;SNPEFF_AMINO_ACID_CHANGE=L565;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207646218_207646524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458541    GT:AD:DP:GQ:PL    0/1:33,22:55:99:676,0,1003
1    207646462    rs17615    G    A    938.99    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.496;DB;DP=68;Dels=0.0;FS=0.961;HRun=1;HaplotypeScore=1.6006;MQ=59.39;MQ0=0;MQRankSum=-1.912;QD=13.81;ReadPosRankSum=-0.444;SNPEFF_AMINO_ACID_CHANGE=S612N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207646218_207646524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458541    GT:AD:DP:GQ:PL    0/1:37,31:68:99:969,0,1154
1    207646898    rs4308977    T    C    859    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=4.542;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.843;QD=13.85;ReadPosRankSum=0.589;SNPEFF_AMINO_ACID_CHANGE=S663P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207646890_207647066;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367057    GT:AD:DP:GQ:PL    0/1:35,27:62:99:889,0,1082
1    207646923    rs17616    G    A    920.90    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.446;DB;DP=77;Dels=0.0;FS=4.851;HRun=0;HaplotypeScore=1.8625;MQ=60.0;MQ0=0;MQRankSum=-0.089;QD=11.96;ReadPosRankSum=-0.721;SNPEFF_AMINO_ACID_CHANGE=R671H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207646890_207647066;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367057    GT:AD:DP:GQ:PL    0/1:44,33:77:99:951,0,1213
1    207653395    rs6540433    C    A    911.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_AMINO_ACID_CHANGE=A1003E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207653323_207653398;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367058    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:944,69,0
1    207653444    rs17258996    T    A    277.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.413;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=-0.53;QD=13.9;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367057    GT:AD:DP:GQ:PL    0/1:10,10:20:99:308,0,325
1    207679307    rs4844600    A    G    5252.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=47.38;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=E60;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207679249_207679428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367049    GT:AD:DP:GQ:PL    1/1:0,157:158:99:5253,409,0
1    207700348    rs146366639    G    A    203.11    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=237;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.96;MQ0=207;QD=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367049    GT:AD:DP:GQ:PL    1/1:87,150:237:27:236,27,0
1    207739127    rs3886100    A    G    2671.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.46;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367049    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2704,205,0
1    207741009    .    T    C    128.48    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.52;MQ0=0;MQRankSum=-3.163;QD=9.18;ReadPosRankSum=0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367049    GT:AD:DP:GQ:PL    0/1:8,6:14:99:158,0,289
1    207741019    rs41274758    C    T    138.15    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.206;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.99;MQ0=0;MQRankSum=-3.014;QD=7.27;ReadPosRankSum=1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367049    GT:AD:DP:GQ:PL    0/1:11,8:19:99:168,0,371
1    207753345    rs2274566    C    T    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367049    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    207760773    rs3737002    C    T    1489.43    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.99;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.8;MQ0=0;MQRankSum=0.531;QD=13.07;ReadPosRankSum=-0.749;SNPEFF_AMINO_ACID_CHANGE=T1408M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207760731_207760910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367051    GT:AD:DP:GQ:PL    0/1:58,56:114:99:1519,0,1737
1    207782707    rs17259045    A    G    2311.28    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.346;DB;DP=129;Dels=0.0;FS=5.555;HRun=0;HaplotypeScore=2.2611;MQ=59.64;MQ0=0;MQRankSum=1.292;QD=17.92;ReadPosRankSum=1.429;SNPEFF_AMINO_ACID_CHANGE=N1090S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207782635_207782891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534202    GT:AD:DP:GQ:PL    0/1:53,76:129:99:2341,0,1580
1    207782916    rs4844609    A    T    2887.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.6336;MQ=59.79;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=T1610S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207782635_207783033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367051    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2921,220,0
1    207784968    rs3818361    A    G    4406.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7284;MQ=58.97;MQ0=0;QD=35.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534202    GT:AD:DP:GQ:PL    1/1:1,123:124:99:4407,328,0
1    207795320    rs2296160    A    G    1857.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=T1969A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207795318_207795341;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367051    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1890,141,0
1    207803595    rs12034383    G    A    114.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367049    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:147,12,0
1    207809605    .    C    T    42.39    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.81;MQ0=1;MQRankSum=-2.657;QD=2.49;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367049    GT:AD:DP:GQ:PL    0/1:10,7:17:72.38:72,0,328
1    207818719    rs11118237    G    A    52.94    PASS    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.223;DB;DP=26;Dels=0.0;FS=3.75;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.482;QD=2.04;ReadPosRankSum=-0.704;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367051    GT:AD:DP:GQ:PL    0/1:21,4:26:82.93:83,0,715
1    207826095    rs112964321    C    CT    273.19    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.608;DB;DP=31;FS=2.291;HRun=10;HaplotypeScore=106.7553;IndelType=I;MQ=59.21;MQ0=0;MQRankSum=0.548;QD=8.81;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:18,12:31:99:312,0,205
1    207842900    rs4844388    G    A    210.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.19;MQ0=0;QD=23.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    1/1:1,8:9:18.06:243,18,0
1    207850539    rs11118328    C    T    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    207850589    rs34451130    A    C    33.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:2,2:4:63.52:64,0,71
1    207850879    rs34509370    C    T    3423.39    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.627;DB;DP=220;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=57.69;MQ0=0;MQRankSum=-0.508;QD=15.56;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=N81;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207850734_207850913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:101,119:220:99:3423,0,2961
1    207851361    rs12125256    C    T    58.13    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=49.83;MQ0=0;MQRankSum=-0.937;QD=8.3;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:3,4:7:88.13:88,0,109
1    207851611    rs2296158    A    G    2005.18    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.435;DB;DP=147;Dels=0.0;FS=8.825;HRun=1;HaplotypeScore=0.6651;MQ=59.3;MQ0=0;MQRankSum=1.322;QD=13.64;ReadPosRankSum=1.626;SNPEFF_AMINO_ACID_CHANGE=R116G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207851543_207851642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:78,69:147:99:2035,0,2368
1    207851760    rs2296159    G    A    193.98    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.415;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=11.41;ReadPosRankSum=1.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430248    GT:AD:DP:GQ:PL    0/1:10,7:17:99:224,0,362
1    207857158    rs12411037    T    C    1329.57    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=5.068;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.85;MQ0=0;MQRankSum=1.256;QD=16.21;ReadPosRankSum=0.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:38,44:82:99:1360,0,1241
1    207871320    rs45575738    G    C    812.60    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=80;Dels=0.05;FS=3.82;HRun=0;HaplotypeScore=11.5981;MQ=59.73;MQ0=0;MQRankSum=-0.946;QD=9.67;ReadPosRankSum=0.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:43,37:80:99:843,0,1439
1    207872595    rs12729569    A    G    1502.59    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=4.65;DB;DP=142;Dels=0.0;FS=4.431;HRun=2;HaplotypeScore=1.7356;MQ=58.79;MQ0=0;MQRankSum=4.777;QD=10.58;ReadPosRankSum=-1.502;SNPEFF_AMINO_ACID_CHANGE=N402D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207872534_207872619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:81,61:142:99:1533,0,2591
1    207872657    rs12748243    C    T    835.54    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.139;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.64;MQ0=0;MQRankSum=2.29;QD=12.85;ReadPosRankSum=1.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:36,29:65:99:866,0,1168
1    207874704    rs17049197    G    A    589.69    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.564;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.18;MQ0=0;MQRankSum=2.204;QD=13.4;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:25,19:44:99:620,0,859
1    207874739    rs34828104    C    G    1028.28    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.195;DB;DP=67;Dels=0.0;FS=6.359;HRun=1;HaplotypeScore=0.9578;MQ=58.66;MQ0=0;MQRankSum=-0.559;QD=15.35;ReadPosRankSum=1.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1058,0,1063
1    207875175    rs4844614    G    T    121.14    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=10.09;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444269    GT:AD:DP:GQ:PL    0/1:7,5:12:99:151,0,239
1    207881485    rs11302038    TA    T    2053.34    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=9.404;DB;DP=122;FS=1.975;HRun=1;HaplotypeScore=868.6479;IndelType=D;MQ=55.77;MQ0=0;MQRankSum=-1.04;QD=16.83;ReadPosRankSum=0.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    0/1:63,59:122:99:2092,0,2583
1    207881489    rs35438924    T    G    1569.78    HaplotypeScoreFilter13    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=5.084;DB;DP=125;Dels=0.01;FS=0.857;HRun=1;HaplotypeScore=58.8846;MQ=55.91;MQ0=0;MQRankSum=-1.716;QD=12.46;ReadPosRankSum=0.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    0/1:62,63:125:99:1600,0,1898
1    207881491    rs34277355    C    A    1564.24    HaplotypeScoreFilter13    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=2.226;DB;DP=127;Dels=0.0;FS=0.835;HRun=1;HaplotypeScore=58.8846;MQ=55.94;MQ0=0;MQRankSum=-0.818;QD=12.32;ReadPosRankSum=-0.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    0/1:62,65:127:99:1594,0,1973
1    207881557    rs6683902    A    G    2885.92    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DB;DP=185;Dels=0.0;FS=5.238;HRun=0;HaplotypeScore=3.1367;MQ=56.92;MQ0=0;MQRankSum=-1.61;QD=15.6;ReadPosRankSum=0.034;SNPEFF_AMINO_ACID_CHANGE=I455V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207881523_207881608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    0/1:92,93:185:99:2916,0,2522
1    207883907    rs3927459    T    G    2751.96    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=5.15;DB;DP=205;Dels=0.0;FS=3.967;HRun=2;HaplotypeScore=1.7882;MQ=59.52;MQ0=0;MQRankSum=-0.158;QD=13.42;ReadPosRankSum=0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    0/1:109,96:205:99:2782,0,3444
1    207884105    rs10779386    C    A    1651.15    PASS    AB=0.454;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.746;DB;DP=108;Dels=0.0;FS=0.845;HRun=0;HaplotypeScore=1.6918;MQ=59.52;MQ0=0;MQRankSum=0.599;QD=15.29;ReadPosRankSum=-0.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    0/1:49,59:108:99:1681,0,1560
1    207884107    rs10779387    G    A    1712.52    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.66;DB;DP=107;Dels=0.0;FS=0.856;HRun=0;HaplotypeScore=2.625;MQ=59.52;MQ0=0;MQRankSum=0.072;QD=16.0;ReadPosRankSum=-0.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    0/1:49,58:107:99:1743,0,1569
1    207884287    rs12132176    A    T    109.92    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.881;QD=12.21;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530905    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,159
1    207884292    rs12132968    T    C    67.41    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=8.43;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530905    GT:AD:DP:GQ:PL    0/1:5,3:8:97.40:97,0,125
1    207888626    rs6677310    C    T    701    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.044;DB;DP=52;Dels=0.0;FS=2.204;HRun=0;HaplotypeScore=5.3265;MQ=55.71;MQ0=0;MQRankSum=-2.497;QD=13.48;ReadPosRankSum=-1.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530905    GT:AD:DP:GQ:PL    0/1:27,25:52:99:731,0,908
1    207888704    rs2796255    T    C    1179.32    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.124;DB;DP=108;Dels=0.0;FS=0.765;HRun=0;HaplotypeScore=0.8321;MQ=52.89;MQ0=0;MQRankSum=-4.363;QD=10.92;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530905    GT:AD:DP:GQ:PL    0/1:55,53:108:99:1209,0,1457
1    207888739    rs7553211    G    T    1329.75    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.853;DB;DP=91;Dels=0.0;FS=2.005;HRun=1;HaplotypeScore=0.8667;MQ=51.93;MQ0=0;MQRankSum=4.82;QD=14.61;ReadPosRankSum=2.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530905    GT:AD:DP:GQ:PL    0/1:42,48:91:99:1360,0,1064
1    207888760    rs2796261    C    T    610.92    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=6.004;DB;DP=74;Dels=0.0;FS=3.001;HRun=0;HaplotypeScore=0.8941;MQ=50.79;MQ0=0;MQRankSum=-4.748;QD=8.26;ReadPosRankSum=-2.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530905    GT:AD:DP:GQ:PL    0/1:43,31:74:99:641,0,1246
1    207890568    rs3849268    G    A    129.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=32.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
1    207890866    rs2796257    T    C    1817.68    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.816;DB;DP=155;Dels=0.0;FS=1.276;HRun=4;HaplotypeScore=0.9332;MQ=58.79;MQ0=0;MQRankSum=1.144;QD=11.73;ReadPosRankSum=-1.465;SNPEFF_AMINO_ACID_CHANGE=L491P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_207890809_207891036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CR1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508064    GT:AD:DP:GQ:PL    0/1:76,79:155:99:1848,0,2399
1    207925361    rs41266397    C    G    42.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.684;QD=4.7;ReadPosRankSum=1.221;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322875    GT:AD:DP:GQ:PL    0/1:5,4:9:72.27:72,0,175
1    207930203    rs2724384    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322875    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    207934487    rs2466572    A    C    226.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=32.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493796    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:260,21,0
1    207934553    rs41258244    A    T    140.66    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.149;DB;DP=20;Dels=0.0;FS=5.006;HRun=2;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.044;QD=7.03;ReadPosRankSum=-1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493796    GT:AD:DP:GQ:PL    0/1:14,6:20:99:171,0,470
1    207941191    rs2724374    G    T    1343.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.8667;MQ=59.53;MQ0=0;QD=27.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464082    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1377,105,0
1    207956559    rs1962149    G    A    205.09    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=10.79;ReadPosRankSum=1.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322875    GT:AD:DP:GQ:PL    0/1:12,7:19:99:235,0,417
1    207959122    rs67225546    CT    C    49.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=14;HaplotypeScore=190.0876;IndelType=D;MQ=50.2;MQ0=0;QD=2.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490278    GT:AD:DP:GQ:PL    1/1:9,12:23:27.85:91,28,0
1    207975681    rs141961287    G    GT    227.48    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=23.2744;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.635;QD=18.96;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR29B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385055    GT:AD:DP:GQ:PL    0/1:5,7:12:99:267,0,150
1    208041366    rs74821401    T    C    109.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.26;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf132;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:142,12,0
1    208050484    rs2745946    T    C    89.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=17.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-328D5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435542    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:122,12,0
1    208050487    rs2785640    G    C    92.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=23.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-328D5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435542    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:125,12,0
1    208062260    rs2745952    T    C    1664.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310833    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1698,132,0
1    208062973    rs2745953    A    T    874.91    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.974;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.43;MQ0=0;MQRankSum=1.072;QD=10.8;ReadPosRankSum=-0.476;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310833    GT:AD:DP:GQ:PL    0/1:48,33:81:99:905,0,1513
1    208063067    rs2179634    G    A    3016.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.22;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=A39V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_208063060_208063837;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367036    GT:AD:DP:GQ:PL    1/1:0,88:89:99:3049,229,0
1    208072697    rs2724368    G    A    469.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310833    GT:AD:DP:GQ:PL    1/1:0,14:14:42.08:503,42,0
1    208072738    rs2724369    A    C    201.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310833    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:234,18,0
1    208204794    rs111796005    CTGTT    C    200.94    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=30.7358;IndelType=D;MQ=49.37;MQ0=0;MQRankSum=0.736;QD=33.49;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:1,5:6:62.03:240,0,62
1    208206394    rs1193091    A    G    71.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
1    208206946    rs6702082    C    G    36.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.18;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:2,2:4:58.37:67,0,58
1    208207839    rs3736963    G    A    424.16    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=2.583;DB;DP=18;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.315;QD=23.56;ReadPosRankSum=0.819;SNPEFF_AMINO_ACID_CHANGE=Y1621;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_208207838_208207937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:3,15:18:56.71:454,0,57
1    208211887    rs905100    T    C    493.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463510    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:527,39,0
1    208212397    rs2767566    A    G    125.89    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=8.99;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:9,5:14:99:156,0,313
1    208213125    rs1751580    A    G    1283.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.71;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1316,99,0
1    208219164    rs1536471    A    C    689.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.124;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.554;QD=12.77;ReadPosRankSum=0.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:27,27:54:99:720,0,902
1    208252489    rs2274445    T    C    79.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.84;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:2,3:5:63.39:109,0,63
1    208255877    rs6540453    T    C    597.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=29.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:630,51,0
1    208258102    rs10159299    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    208300491    rs681241    T    G    528.14    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.223;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=18.86;ReadPosRankSum=-1.882;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:11,17:28:99:558,0,370
1    208300619    rs10666701    T    TAC    3530.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;FS=0.0;HRun=0;HaplotypeScore=213.0258;IndelType=I;MQ=60.56;MQ0=0;QD=41.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    1/1:14,71:85:99:3530,211,0
1    208390086    rs1664227    G    C    434.24    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=29;Dels=0.0;FS=12.187;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.069;QD=14.97;ReadPosRankSum=1.069;SNPEFF_AMINO_ACID_CHANGE=T394;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_208390080_208391347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:15,14:29:99:464,0,425
1    208391085    rs12120681    G    A    1559.70    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=4.756;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.06;MQ0=0;MQRankSum=-1.096;QD=15.75;ReadPosRankSum=-0.148;SNPEFF_AMINO_ACID_CHANGE=A61;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_208390080_208391347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:46,53:99:99:1590,0,1159
1    208391254    rs2782948    C    T    359.74    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=3.079;DB;DP=18;Dels=0.0;FS=2.772;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.449;QD=19.99;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=R5Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_208390080_208391347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367033    GT:AD:DP:GQ:PL    0/1:7,11:18:99:390,0,176
1    208871055    rs1166871    G    T    933.64    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=58;Dels=0.0;FS=5.498;HRun=0;HaplotypeScore=0.6651;MQ=59.7;MQ0=0;MQRankSum=0.533;QD=16.1;ReadPosRankSum=-2.715;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-459K23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419030    GT:AD:DP:GQ:PL    0/1:24,34:58:99:964,0,753
1    209603996    rs2294938    A    G    112.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTA-55I10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444286    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:145,12,0
1    209605636    rs72396496    TAGCAGCAGCAGC    T    994.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=271.8952;IndelType=D;MQ=44.2;MQ0=0;MQRankSum=0.935;QD=47.38;ReadPosRankSum=1.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTA-55I10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419143    GT:AD:DP:GQ:PL    1/1:9,12:21:34.08:1037,34,0
1    209779805    rs880783    G    A    799.72    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.624;DB;DP=44;Dels=0.0;FS=8.157;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.159;QD=18.18;ReadPosRankSum=0.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000009105    GT:AD:DP:GQ:PL    0/1:19,25:44:99:830,0,592
1    209782343    rs11119314    A    G    388.58    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.214;DB;DP=71;Dels=0.0;FS=2.505;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.276;QD=5.47;ReadPosRankSum=-0.375;SNPEFF_AMINO_ACID_CHANGE=H193R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209782325_209782437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423146    GT:AD:DP:GQ:PL    0/1:51,19:71:99:419,0,1588
1    209784663    rs10746421    A    C    38.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423146    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:69,0,31
1    209784927    rs2076230    G    T    460.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=28;Dels=0.0;FS=6.805;HRun=0;HaplotypeScore=2.7062;MQ=59.33;MQ0=0;MQRankSum=-0.345;QD=16.46;ReadPosRankSum=2.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423146    GT:AD:DP:GQ:PL    0/1:14,14:28:99:491,0,492
1    209785011    rs2076226    G    C    289.83    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.503;DB;DP=26;Dels=0.0;FS=1.85;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.237;QD=11.15;ReadPosRankSum=1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423146    GT:AD:DP:GQ:PL    0/1:16,10:26:99:320,0,442
1    209785957    rs2272879    T    G    167.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423146    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
1    209786078    rs2272880    G    A    183.53    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=14.12;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423146    GT:AD:DP:GQ:PL    0/1:7,6:13:99:214,0,160
1    209788703    rs1049607    T    C    529.78    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.419;DB;DP=47;Dels=0.0;FS=2.623;HRun=1;HaplotypeScore=1.4725;MQ=58.51;MQ0=0;MQRankSum=-0.176;QD=11.27;ReadPosRankSum=-0.772;SNPEFF_AMINO_ACID_CHANGE=S1144;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209788237_209788752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:25,21:47:99:560,0,695
1    209792015    rs5780528    A    AC    677.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=42.3163;IndelType=I;MQ=61.34;MQ0=0;QD=42.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000009105    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:719,48,0
1    209795909    rs3179860    T    C    706    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=4.025;DB;DP=66;Dels=0.0;FS=8.052;HRun=0;HaplotypeScore=0.9997;MQ=59.3;MQ0=0;MQRankSum=0.647;QD=10.7;ReadPosRankSum=-0.022;SNPEFF_AMINO_ACID_CHANGE=L891;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209795881_209796025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:40,24:66:99:736,0,1145
1    209796329    rs12748250    T    A    1069.07    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=60;Dels=0.0;FS=1.059;HRun=1;HaplotypeScore=2.1445;MQ=59.23;MQ0=0;MQRankSum=-0.971;QD=17.82;ReadPosRankSum=0.76;SNPEFF_AMINO_ACID_CHANGE=M852L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209796327_209796524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:21,38:60:99:1099,0,599
1    209798771    rs9430008    G    A    134.12    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=22.35;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:1,5:6:18.93:164,0,19
1    209798824    rs4844860    A    G    177.83    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.821;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.274;QD=7.11;ReadPosRankSum=-0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:16,9:25:99:208,0,583
1    209799253    rs2179402    A    G    517.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=C572;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209798993_209799371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:550,42,0
1    209803163    rs114875539    C    T    1123.59    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.947;DB;DP=64;Dels=0.0;FS=2.241;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.287;QD=17.56;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=E351K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209803082_209803270;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:27,37:64:99:1154,0,680
1    209804095    rs4844863    G    A    1049.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415782    GT:AD:DP:GQ:PL    1/1:0,31:31:81.24:1083,81,0
1    209807972    rs1130667    G    A    78.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=11.23;ReadPosRankSum=-1.3;SNPEFF_AMINO_ACID_CHANGE=P128;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209807792_209807983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:3,4:7:99:109,0,110
1    209811829    rs2076355    A    T    1302.57    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.421;QD=15.88;ReadPosRankSum=0.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:34,48:82:99:1333,0,940
1    209811886    rs2076356    T    G    1219.83    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=2.796;DB;DP=107;Dels=0.0;FS=3.646;HRun=1;HaplotypeScore=3.6255;MQ=59.65;MQ0=0;MQRankSum=-1.198;QD=11.4;ReadPosRankSum=-1.179;SNPEFF_AMINO_ACID_CHANGE=S97;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209811879_209811993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:61,45:107:99:1250,0,1845
1    209812063    rs2076357    T    C    360.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:394,30,0
1    209823354    rs3764781    G    A    402.33    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.204;DB;DP=38;Dels=0.0;FS=1.302;HRun=1;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=0.29;QD=10.59;ReadPosRankSum=-2.636;SNPEFF_AMINO_ACID_CHANGE=T46;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209823309_209823463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:20,18:38:99:432,0,688
1    209824099    rs2076360    G    C    218.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=15.61;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356082    GT:AD:DP:GQ:PL    0/1:7,7:14:99:248,0,215
1    209849002    rs3817870    T    C    51.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_209848998_209849733;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G0S2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367029    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
1    209849399    rs3830766    AG    A    377.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=64.1144;IndelType=D;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G0S2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367029    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:420,30,0
1    209849406    rs1473683    T    G    331.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G0S2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367029    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:364,27,0
1    209880216    rs77382927    C    CA    1097.06    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=51;FS=1.186;HRun=2;HaplotypeScore=169.9359;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=-1.416;QD=21.51;ReadPosRankSum=0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD11B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261465    GT:AD:DP:GQ:PL    0/1:21,30:51:99:1136,0,518
1    209880259    rs12086634    T    G    846.83    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.912;DB;DP=56;Dels=0.0;FS=0.995;HRun=1;HaplotypeScore=0.0;MQ=60.39;MQ0=0;MQRankSum=0.518;QD=15.12;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD11B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261465    GT:AD:DP:GQ:PL    0/1:26,30:56:99:877,0,761
1    209880508    rs72201436    GA    G    208.22    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.122;DB;DP=19;FS=0.0;HRun=11;HaplotypeScore=57.8412;IndelType=D;MQ=58.78;MQ0=0;MQRankSum=-0.303;QD=10.96;ReadPosRankSum=0.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD11B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261465    GT:AD:DP:GQ:PL    0/1:8,11:19:80.03:247,0,80
1    209905734    rs932335    G    C    592.01    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.08;DB;DP=27;Dels=0.0;FS=4.314;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.126;QD=21.93;ReadPosRankSum=-0.728;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD11B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261465    GT:AD:DP:GQ:PL    0/1:10,17:27:99:622,0,341
1    209933331    rs6685077    A    G    191.46    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DB;DP=19;Dels=0.0;FS=2.017;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.531;QD=10.08;ReadPosRankSum=0.531;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_1_209933327_209933729;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367024    GT:AD:DP:GQ:PL    0/1:10,9:19:99:221,0,330
1    209933540    rs2076150    A    G    148.84    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.7;DB;DP=24;Dels=0.0;FS=4.675;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=6.2;ReadPosRankSum=0.233;SNPEFF_AMINO_ACID_CHANGE=Q52;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209933385_209933669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000010338    GT:AD:DP:GQ:PL    0/1:18,6:24:99:179,0,527
1    209935778    rs10489342    A    G    238.19    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=24;Dels=0.0;FS=3.171;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.232;QD=9.92;ReadPosRankSum=-0.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479796    GT:AD:DP:GQ:PL    0/1:13,11:24:99:268,0,436
1    209936466    rs7548219    A    G    305.62    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=26;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.694;QD=11.75;ReadPosRankSum=2.392;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468672    GT:AD:DP:GQ:PL    0/1:12,14:26:99:336,0,386
1    209936571    rs6540555    A    G    317.80    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=21;Dels=0.0;FS=4.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.675;QD=15.13;ReadPosRankSum=0.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468672    GT:AD:DP:GQ:PL    0/1:9,12:21:99:348,0,310
1    209936631    rs6540556    G    A    439.79    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.23;QD=15.71;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468672    GT:AD:DP:GQ:PL    0/1:13,15:28:99:470,0,394
1    209936673    rs7536882    C    G    810.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=50;Dels=0.0;FS=18.07;HRun=0;HaplotypeScore=1.5757;MQ=59.07;MQ0=0;MQRankSum=-4.196;QD=16.22;ReadPosRankSum=-0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468672    GT:AD:DP:GQ:PL    0/1:20,30:50:99:841,0,654
1    209936914    rs17015169    C    T    464.01    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.336;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.23;QD=16.57;ReadPosRankSum=-1.382;SNPEFF_AMINO_ACID_CHANGE=A208;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209936837_209936932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000010338    GT:AD:DP:GQ:PL    0/1:13,15:28:99:494,0,376
1    209936964    rs34406510    T    TCA    461.96    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=64.1164;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=0.953;QD=28.87;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468672    GT:AD:DP:GQ:PL    0/1:7,9:16:99:501,0,295
1    209950681    rs649275    T    C    412.60    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.451;DB;DP=59;Dels=0.0;FS=7.558;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.385;QD=6.99;ReadPosRankSum=-2.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294811    GT:AD:DP:GQ:PL    0/1:36,23:59:99:443,0,1206
1    209950760    rs669694    C    G    689.25    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=58.84;MQ0=0;MQRankSum=0.379;QD=17.23;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=Q109E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209950697_209950832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367023    GT:AD:DP:GQ:PL    0/1:19,21:40:99:719,0,580
1    209953706    rs11590807    C    T    711.42    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.479;DB;DP=49;Dels=0.0;FS=4.59;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=2.756;QD=14.52;ReadPosRankSum=-0.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294811    GT:AD:DP:GQ:PL    0/1:24,25:49:99:741,0,763
1    209965587    rs2235375    G    C    597.05    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.442;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8332;MQ=59.53;MQ0=0;MQRankSum=-0.592;QD=12.18;ReadPosRankSum=2.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367021    GT:AD:DP:GQ:PL    0/1:28,20:49:99:627,0,749
1    209968684    rs2013162    C    A    584.31    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.985;DB;DP=48;Dels=0.0;FS=4.286;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.17;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=S153;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_209968635_209968763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367021    GT:AD:DP:GQ:PL    0/1:26,22:48:99:614,0,707
1    209969902    rs7552506    G    C    530.28    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.176;DB;DP=28;Dels=0.0;FS=3.886;HRun=0;HaplotypeScore=0.8321;MQ=58.5;MQ0=0;MQRankSum=0.0;QD=18.94;ReadPosRankSum=1.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367021    GT:AD:DP:GQ:PL    0/1:11,17:28:99:560,0,333
1    210001233    rs661849    C    T    35.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:66,0,71
1    210001543    rs12404886    A    T    283.95    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.884;DB;DP=23;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.651;QD=12.35;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:13,10:23:99:314,0,475
1    210003402    rs599649    T    C    452.60    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=15.09;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:14,16:30:99:483,0,467
1    210004199    rs585627    C    G    651.20    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=0.899;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=59.07;MQ0=0;MQRankSum=-0.281;QD=10.02;ReadPosRankSum=0.391;SNPEFF_AMINO_ACID_CHANGE=Q67E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_210004148_210004388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:42,23:65:99:681,0,1428
1    210004613    rs627069    C    G    43.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.63;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:1,2:3:17.65:74,0,18
1    210006603    rs656566    C    T    414.66    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.206;DB;DP=29;Dels=0.0;FS=1.786;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.338;QD=14.3;ReadPosRankSum=-0.724;SNPEFF_AMINO_ACID_CHANGE=P154;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_210006530_210006703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:13,16:29:99:445,0,443
1    210008367    rs685248    C    G    128    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-1.009;QD=6.74;ReadPosRankSum=1.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:13,6:19:99:158,0,483
1    210008374    rs41274838    C    T    142.63    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.981;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-1.743;QD=7.13;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:13,7:20:99:173,0,477
1    210008673    rs686582    T    G    177.72    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=17.77;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,138
1    210012102    rs1962735    A    G    387.58    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.553;DB;DP=30;Dels=0.0;FS=3.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=12.92;ReadPosRankSum=-0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:17,13:30:99:418,0,621
1    210014093    rs654470    A    T    194.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.103;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=12.19;ReadPosRankSum=0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:8,8:16:99:225,0,282
1    210015568    rs10570454    GCT    G    292.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DB;DP=18;FS=3.274;HRun=0;HaplotypeScore=70.2364;IndelType=D;MQ=60.17;MQ0=0;MQRankSum=-0.048;QD=16.27;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIEXF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491415    GT:AD:DP:GQ:PL    0/1:9,9:18:99:332,0,389
1    210111733    rs12025114    G    A    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367019    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:68,0,31
1    210125948    .    CTT    C    292.25    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.391;DP=18;FS=0.0;HRun=7;HaplotypeScore=61.8237;IndelType=D;MQ=58.96;MQ0=0;MQRankSum=-0.927;QD=16.24;ReadPosRankSum=-1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367019    GT:AD:DP:GQ:PL    0/1:8,10:18:99:331,0,316
1    210267893    rs144713062    TGAA    T    419.87    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=3.607;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=143.3859;IndelType=D;MQ=58.41;MQ0=0;MQRankSum=0.117;QD=11.35;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=E186-;SNPEFF_CODON_CHANGE=gaa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_1_210267667_210267938;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367015    GT:AD:DP:GQ:PL    0/1:25,12:37:99:459,0,1477
1    210273886    rs2494187    A    T    134.74    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.381;QD=9.62;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367015    GT:AD:DP:GQ:PL    0/1:9,5:14:99:165,0,289
1    210334081    rs17188183    T    C    414.77    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=31;Dels=0.0;FS=2.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.85;QD=13.38;ReadPosRankSum=-1.166;SNPEFF_AMINO_ACID_CHANGE=Y416;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_210334074_210337636;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367015    GT:AD:DP:GQ:PL    0/1:16,15:31:99:445,0,537
1    210536078    rs2294848    C    G    295.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261458    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
1    210577873    rs2066721    G    C    1467.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_AMINO_ACID_CHANGE=L113;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_210577808_210578023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537898    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1501,111,0
1    210591742    rs3215542    TG    T    65.08    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.824;DB;DP=20;FS=0.0;HRun=6;HaplotypeScore=48.4632;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.972;QD=3.25;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261458    GT:AD:DP:GQ:PL    0/1:15,5:20:99:104,0,492
1    210686570    rs4545340    A    G    417.69    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.268;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.401;QD=11.93;ReadPosRankSum=-0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261458    GT:AD:DP:GQ:PL    0/1:19,16:35:99:448,0,606
1    210686614    rs12142231    A    G    326.77    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.939;QD=17.2;ReadPosRankSum=0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261458    GT:AD:DP:GQ:PL    0/1:9,10:19:99:357,0,311
1    210761462    rs4297293    G    C    459.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261458    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:493,36,0
1    210804430    rs4951682    G    A    473.89    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=29;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=1.6208;MQ=59.2;MQ0=0;MQRankSum=-0.487;QD=16.34;ReadPosRankSum=-0.441;SNPEFF_AMINO_ACID_CHANGE=V494I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_210804341_210804507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391905    GT:AD:DP:GQ:PL    0/1:12,17:29:99:504,0,420
1    210847514    rs1934615    A    T    34.59    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.94;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261458    GT:AD:DP:GQ:PL    0/1:5,2:7:64.58:65,0,179
1    210856585    rs3135473    G    T    1702.96    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.89;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8797;MQ=58.98;MQ0=0;MQRankSum=-1.221;QD=12.52;ReadPosRankSum=0.21;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271751    GT:AD:DP:GQ:PL    0/1:68,67:136:99:1733,0,1917
1    210857457    rs1135317    A    G    706.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.355;DB;DP=50;Dels=0.0;FS=2.505;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.359;QD=14.13;ReadPosRankSum=1.057;SNPEFF_AMINO_ACID_CHANGE=D685;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_210856580_210857480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367007    GT:AD:DP:GQ:PL    0/1:20,30:50:99:736,0,491
1    211255936    rs4620600    G    A    543.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271751    GT:AD:DP:GQ:PL    1/1:0,17:17:48.10:576,48,0
1    211280724    rs111658240    TA    T    719.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.766;DB;DP=59;FS=4.574;HRun=14;HaplotypeScore=329.7486;IndelType=D;MQ=58.43;MQ0=0;MQRankSum=-0.282;QD=12.2;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271751    GT:AD:DP:GQ:PL    1/1:9,45:59:96.19:762,96,0
1    211447625    rs11580084    G    A    978.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCOR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528408    GT:AD:DP:GQ:PL    1/1:0,31:31:72.24:1011,72,0
1    211449451    rs10732682    A    G    464.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=35.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCOR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528408    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:497,39,0
1    211452529    rs10708960    TA    T    134.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=15;HaplotypeScore=61.5913;IndelType=D;MQ=56.71;MQ0=0;QD=12.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCOR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533469    GT:AD:DP:GQ:PL    1/1:1,8:11:28.60:176,29,0
1    211452678    rs3767377    G    A    1185.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.8;MQ0=0;QD=37.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCOR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529572    GT:AD:DP:GQ:PL    1/1:0,32:32:93.29:1218,93,0
1    211452728    rs3767378    G    A    453.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCOR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529572    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:487,36,0
1    211527609    rs7530570    C    A    124.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494355    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    211545442    rs11305975    CT    C    345.75    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.199;DB;DP=42;FS=0.0;HRun=16;HaplotypeScore=276.4518;IndelType=D;MQ=55.3;MQ0=0;MQRankSum=0.166;QD=8.23;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261464    GT:AD:DP:GQ:PL    0/1:16,22:42:59.52:385,0,60
1    211545458    .    TC    T    118.04    PASS    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=2.102;DP=49;FS=15.367;HRun=1;HaplotypeScore=318.8915;IndelType=D;MQ=55.99;MQ0=0;MQRankSum=-0.599;QD=2.41;ReadPosRankSum=-0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261464    GT:AD:DP:GQ:PL    0/1:41,8:49:99:157,0,496
1    211591135    rs1707247    T    C    2146.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.3;MQ0=0;QD=35.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423222    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2180,163,0
1    211842808    rs697004    A    C    163.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366998    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
1    211846876    rs701929    A    G    616.95    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.428;DB;DP=67;Dels=0.0;FS=5.142;HRun=0;HaplotypeScore=0.9958;MQ=59.66;MQ0=0;MQRankSum=-0.344;QD=9.21;ReadPosRankSum=0.833;SNPEFF_AMINO_ACID_CHANGE=H125;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_211846825_211847065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540251    GT:AD:DP:GQ:PL    0/1:41,26:67:99:647,0,1229
1    212154688    rs114914822    C    T    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366992    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    212190116    rs2993531    A    C    223.17    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=17.17;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366992    GT:AD:DP:GQ:PL    0/1:5,8:13:99:253,0,154
1    212217971    rs72507799    C    CTT    1585.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=1;HaplotypeScore=167.3185;IndelType=I;MQ=53.85;MQ0=0;QD=46.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366991    GT:AD:DP:GQ:PL    1/1:5,28:34:87.30:1628,87,0
1    212220847    rs2970592    G    A    608.24    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.085;QD=16.9;ReadPosRankSum=0.875;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366991    GT:AD:DP:GQ:PL    0/1:16,20:36:99:638,0,565
1    212225215    rs2970593    G    A    89.09    MQFilter40    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=0.335;DB;DP=34;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=23.42;MQ0=11;MQRankSum=1.453;QD=2.62;ReadPosRankSum=-0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366991    GT:AD:DP:GQ:PL    0/1:28,6:34:99:119,0,346
1    212225343    rs2993547    T    C    785.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.85;MQ0=1;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366991    GT:AD:DP:GQ:PL    1/1:0,28:28:75.13:819,75,0
1    212225344    rs61828543    G    A    207.97    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=2.284;DB;DP=27;Dels=0.0;FS=1.598;HRun=0;HaplotypeScore=0.0;MQ=40.19;MQ0=1;MQRankSum=-1.661;QD=7.7;ReadPosRankSum=-0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366991    GT:AD:DP:GQ:PL    0/1:16,11:27:99:238,0,437
1    212236157    rs4951436    G    T    769.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366991    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:802,60,0
1    212241714    rs72017111    TA    T    96.44    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.803;DB;DP=28;FS=0.0;HRun=15;HaplotypeScore=129.3957;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=1.479;QD=3.44;ReadPosRankSum=1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366991    GT:AD:DP:GQ:PL    0/1:20,7:28:99:135,0,109
1    212253917    rs139218985    AT    A    2623.60    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=7.66;DB;DP=153;FS=0.682;HRun=2;HaplotypeScore=385.8581;IndelType=D;MQ=59.82;MQ0=0;MQRankSum=2.047;QD=17.15;ReadPosRankSum=-1.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366991    GT:AD:DP:GQ:PL    0/1:72,81:153:99:2663,0,2691
1    212273639    rs3135474    C    T    1263.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=A115V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212273594_212274426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420235    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1296,99,0
1    212274413    rs6540718    A    C    1236.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=K373T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212273594_212274426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420235    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1269,96,0
1    212274503    rs72346427    C    CT    58.75    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=11;FS=0.0;HRun=14;HaplotypeScore=38.1628;IndelType=I;MQ=61.94;MQ0=0;MQRankSum=0.198;QD=5.34;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463791    GT:AD:DP:GQ:PL    0/1:5,5:11:17.69:98,0,18
1    212521639    rs701908    T    G    259.56    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=14.42;ReadPosRankSum=0.906;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498129    GT:AD:DP:GQ:PL    0/1:7,11:18:99:290,0,240
1    212526288    rs792442    C    T    995.31    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=81;Dels=0.0;FS=2.324;HRun=0;HaplotypeScore=1.7356;MQ=59.43;MQ0=0;MQRankSum=0.746;QD=12.29;ReadPosRankSum=-0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261461    GT:AD:DP:GQ:PL    0/1:45,36:81:99:1025,0,1451
1    212530192    rs792439    T    C    205.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261461    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
1    212538899    rs12127560    A    G    71.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.22;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261461    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:101,0,68
1    212538923    rs12138533    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261461    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
1    212560327    rs792449    A    G    2535.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=F144;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212560233_212560442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM206;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535273    GT:AD:DP:GQ:PL    1/1:2,79:82:99:2568,205,0
1    212615875    rs521469    T    C    536.08    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.148;DB;DP=45;Dels=0.0;FS=1.552;HRun=3;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-2.373;QD=11.91;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NENF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366988    GT:AD:DP:GQ:PL    0/1:23,22:45:99:566,0,723
1    212619339    rs4804    T    C    1108.91    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.213;DB;DP=76;Dels=0.0;FS=2.228;HRun=0;HaplotypeScore=0.8941;MQ=59.7;MQ0=0;MQRankSum=-0.304;QD=14.59;ReadPosRankSum=1.121;SNPEFF_AMINO_ACID_CHANGE=D170;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212619172_212619714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NENF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366988    GT:AD:DP:GQ:PL    0/1:33,43:76:99:1139,0,921
1    212791288    rs71927630    CGT    C    332.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=81.3094;IndelType=D;MQ=52.79;MQ0=1;QD=25.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336937    GT:AD:DP:GQ:PL    1/1:3,9:12:32.93:374,33,0
1    212792191    rs11571552    A    G    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.84;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336937    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
1    212798977    rs3122712    A    G    1593.61    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.243;DB;DP=115;Dels=0.0;FS=6.027;HRun=0;HaplotypeScore=5.6639;MQ=59.84;MQ0=0;MQRankSum=1.483;QD=13.86;ReadPosRankSum=0.998;SNPEFF_AMINO_ACID_CHANGE=N253S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212797789_212800120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294829    GT:AD:DP:GQ:PL    0/1:58,57:115:99:1624,0,1622
1    212799870    rs3122713    A    G    2216.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=N326D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212798895_212800114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545975    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2250,175,0
1    212799949    rs3795842    C    T    2092.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=59.63;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=T352M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212798895_212800114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545975    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2126,162,0
1    212900434    rs3835160    C    CG    1044.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=121.9089;IndelType=I;MQ=59.94;MQ0=0;QD=45.41;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366978    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:1087,69,0
1    212900487    rs2244935    A    G    1247.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.97;MQ0=0;QD=27.73;SNPEFF_AMINO_ACID_CHANGE=V75;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212899495_212900521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366978    GT:AD:DP:GQ:PL    1/1:0,45:45:93.30:1281,93,0
1    212911836    rs15702    T    C    3219.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=M213V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_212911269_212912028;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366975    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3252,256,0
1    212955231    rs11120025    A    C    520.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473995    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:554,39,0
1    212955454    rs11120026    G    A    1109.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.654;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1017;MQ=59.77;MQ0=0;MQRankSum=0.661;QD=11.2;ReadPosRankSum=0.522;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487995    GT:AD:DP:GQ:PL    0/1:56,42:99:99:1139,0,1654
1    212961143    rs3820679    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366975    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
1    212969842    rs71885232    C    CT    417.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.063;DB;DP=23;FS=0.0;HRun=13;HaplotypeScore=87.1955;IndelType=I;MQ=57.97;MQ0=0;MQRankSum=-1.197;QD=18.15;ReadPosRankSum=1.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366973    GT:AD:DP:GQ:PL    1/1:5,18:23:18.89:459,19,0
1    212970375    rs1284800    A    G    529.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532433    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:563,42,0
1    212985466    rs12130945    C    T    274.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530399    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
1    213003372    rs12133194    A    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf227;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332912    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    213009469    rs10864004    A    G    1198.12    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.476;DB;DP=95;Dels=0.0;FS=6.61;HRun=0;HaplotypeScore=2.4706;MQ=59.27;MQ0=0;MQRankSum=0.954;QD=12.61;ReadPosRankSum=-0.833;SNPEFF_AMINO_ACID_CHANGE=I8T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_213009215_213009529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf227;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332912    GT:AD:DP:GQ:PL    0/1:50,45:95:99:1228,0,1519
1    213031158    rs1047881    C    T    411.40    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.845;DB;DP=35;Dels=0.0;FS=1.394;HRun=1;HaplotypeScore=0.8941;MQ=59.34;MQ0=0;MQRankSum=0.776;QD=11.75;ReadPosRankSum=-1.397;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:18,17:35:99:441,0,506
1    213031350    rs2220949    C    T    30.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.18;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:3,2:5:60.89:61,0,72
1    213031448    rs2201601    G    C    61.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.4;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:92,0,27
1    213031473    rs2201602    A    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    213032568    rs12023052    T    A    239.09    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.814;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=-0.37;QD=8.86;ReadPosRankSum=-0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:16,11:27:99:269,0,501
1    213037310    rs3768548    T    C    134.98    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=22.5;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:165,0,23
1    213046236    rs1890932    G    A    481    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=14.15;ReadPosRankSum=0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:16,17:34:99:511,0,570
1    213056819    rs2644547    A    G    453.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:487,39,0
1    213056892    rs12125982    A    G    74.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=12.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,101
1    213058852    rs7536716    T    A    74.28    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=1.231;QD=10.61;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:2,5:7:67.83:104,0,68
1    213058871    rs7522693    C    G    42.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.736;QD=8.55;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:1,2:5:27.95:73,0,28
1    213061362    rs2291772    T    A    322.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=24;Dels=0.0;FS=6.628;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=2.685;QD=13.45;ReadPosRankSum=-1.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474693    GT:AD:DP:GQ:PL    0/1:12,12:24:99:353,0,414
1    213061460    rs2291771    T    C    173.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=19.23;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474693    GT:AD:DP:GQ:PL    0/1:3,6:9:96.55:203,0,97
1    213062017    rs112024320    T    TTTG    388.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=34.7366;IndelType=I;MQ=57.87;MQ0=0;QD=35.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474693    GT:AD:DP:GQ:PL    1/1:4,7:11:21.07:430,21,0
1    213068096    rs12405293    T    C    179.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:212,18,0
1    213068192    rs2792558    T    C    559.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.735;QD=31.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    1/1:1,17:18:48.15:593,48,0
1    213068233    rs12408694    C    T    1315.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1349,105,0
1    213068404    rs17019870    T    C    1466.05    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.859;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.54;MQ0=0;MQRankSum=0.409;QD=14.66;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:51,49:100:99:1496,0,1593
1    213068436    rs17019873    A    G    957.10    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.783;DB;DP=75;Dels=0.0;FS=1.217;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=1.305;QD=12.76;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:42,33:75:99:987,0,1401
1    213068542    .    C    CTGAT    1582.69    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.748;DP=40;FS=0.0;HRun=0;HaplotypeScore=163.8118;IndelType=I;MQ=58.77;MQ0=0;MQRankSum=-1.374;QD=39.57;ReadPosRankSum=-0.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:18,21:40:99:1622,0,685
1    213068595    rs3207090    C    T    457.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.101;DB;DP=35;Dels=0.0;FS=1.423;HRun=0;HaplotypeScore=2.3639;MQ=57.64;MQ0=0;MQRankSum=1.274;QD=13.08;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=T544M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_213068558_213072705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLVCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366971    GT:AD:DP:GQ:PL    0/1:17,17:35:99:488,0,479
1    213139748    rs3738805    T    G    434.73    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.264;QD=13.59;ReadPosRankSum=-1.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481097    GT:AD:DP:GQ:PL    0/1:17,15:32:99:465,0,533
1    213140362    rs10779597    G    A    170.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.588;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.259;QD=14.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481097    GT:AD:DP:GQ:PL    0/1:6,6:12:99:200,0,197
1    213140398    rs10779598    A    C    192.04    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481097    GT:AD:DP:GQ:PL    0/1:14,7:21:99:222,0,411
1    213178340    rs11120076    G    A    252.21    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=15.76;ReadPosRankSum=-1.905;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGEL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310246    GT:AD:DP:GQ:PL    0/1:7,9:16:99:282,0,244
1    213180441    rs71147054    G    GA    162.31    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=2.702;DB;DP=55;FS=0.0;HRun=17;HaplotypeScore=500.0011;IndelType=I;MQ=50.46;MQ0=0;MQRankSum=0.701;QD=2.95;ReadPosRankSum=0.3;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_213179882_213180455;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGEL2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000310246    GT:AD:DP:GQ:PL    0/1:31,12:55:53:201,0,53
1    213181381    rs3124666    G    T    123.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=54.16;MQ0=0;QD=24.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGEL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481918    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
1    213181916    rs3002284    T    C    48.55    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.74;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.925;QD=4.05;ReadPosRankSum=-0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGEL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310246    GT:AD:DP:GQ:PL    0/1:9,3:12:78.54:79,0,330
1    213224719    rs4951476    T    C    94.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.0;QD=7.84;ReadPosRankSum=0.278;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_213224597_213224851;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366959    GT:AD:DP:GQ:PL    0/1:8,4:12:99:124,0,195
1    213416197    rs4411110    G    A    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366959    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    213783102    .    C    CGG    77.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=13;FS=0.0;HRun=3;HaplotypeScore=82.8773;IndelType=I;MQ=35.57;MQ0=0;MQRankSum=-0.736;QD=5.98;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL592063.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408099    GT:AD:DP:GQ:PL    1/1:4,5:13:7.76:119,8,0
1    214204377    rs34640999    CGT    C    233.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=79.0261;IndelType=D;MQ=57.42;MQ0=0;QD=14.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261454    GT:AD:DP:GQ:PL    1/1:6,9:16:26.89:276,27,0
1    214491536    rs55760458    G    C    403.09    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.369;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.72;QD=10.61;ReadPosRankSum=0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366957    GT:AD:DP:GQ:PL    0/1:21,17:38:99:433,0,710
1    214492286    rs1134647    G    A    857.40    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=65;Dels=0.0;FS=0.97;HRun=1;HaplotypeScore=2.8931;MQ=59.71;MQ0=0;MQRankSum=-0.625;QD=13.19;ReadPosRankSum=-1.322;SNPEFF_AMINO_ACID_CHANGE=G165E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214492202_214492326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMYD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366957    GT:AD:DP:GQ:PL    0/1:30,35:65:99:887,0,1012
1    214497861    rs6695148    G    T    332.76    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=18.49;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366957    GT:AD:DP:GQ:PL    0/1:7,11:18:99:363,0,233
1    214498306    rs3767842    C    T    81    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.25;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366957    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:111,0,21
1    214500907    rs17022608    A    C    418.67    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.996;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.619;QD=9.52;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366957    GT:AD:DP:GQ:PL    0/1:29,15:44:99:449,0,970
1    214504604    rs2270704    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484459    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    214537627    rs72757949    C    T    144.12    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.01;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,139
1    214542668    rs3002311    T    C    116.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=16.7;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473261    GT:AD:DP:GQ:PL    0/1:3,4:7:99:147,0,104
1    214542819    rs1135352    T    C    1202.68    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.383;DB;DP=86;Dels=0.0;FS=3.813;HRun=1;HaplotypeScore=1.8561;MQ=59.78;MQ0=0;MQRankSum=0.964;QD=13.98;ReadPosRankSum=-0.753;SNPEFF_AMINO_ACID_CHANGE=E1084;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214542800_214543034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:45,41:86:99:1233,0,1401
1    214551276    rs3013451    G    A    1002.34    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=0.132;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.566;MQ=58.83;MQ0=0;MQRankSum=1.107;QD=12.08;ReadPosRankSum=-1.828;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:41,42:83:99:1032,0,1034
1    214556483    rs72757966    T    A    193    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.78;QD=13.79;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:7,7:14:99:223,0,241
1    214558228    rs3013446    A    G    169.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.741;QD=16.97;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:4,6:10:97.65:200,0,98
1    214564340    rs7550799    T    C    323.14    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=27;Dels=0.0;FS=6.239;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.136;QD=11.97;ReadPosRankSum=-0.027;SNPEFF_AMINO_ACID_CHANGE=R326;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214564331_214564388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:14,13:27:99:353,0,422
1    214566845    rs7355212    A    G    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:72,0,30
1    214566952    rs4655342    A    G    122.22    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.9;MQ0=0;MQRankSum=0.135;QD=10.18;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:7,5:12:99:152,0,250
1    214567013    rs66776609    CG    C    157.74    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=20;FS=0.0;HRun=7;HaplotypeScore=72.3657;IndelType=D;MQ=59.39;MQ0=0;MQRankSum=0.998;QD=7.89;ReadPosRankSum=-0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:12,8:20:99:197,0,239
1    214568471    rs11120308    C    A    178.56    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=19.84;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:2,7:9:49.85:209,0,50
1    214576454    rs72757974    C    A    72.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=10.38;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,137
1    214584942    rs186566583    T    A    205.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.507;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=10.29;ReadPosRankSum=-1.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:12,8:20:99:236,0,427
1    214625431    rs7355177    A    G    175.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.054;QD=19.46;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:3,6:9:93.59:205,0,94
1    214637882    rs7528315    A    G    93.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=9.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486173    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,221
1    214638172    rs10864100    C    T    235.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.66;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=11.19;ReadPosRankSum=0.462;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486173    GT:AD:DP:GQ:PL    0/1:12,9:21:99:265,0,352
1    214656070    rs12740343    T    C    290.88    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DB;DP=26;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.9983;MQ=34.02;MQ0=1;MQRankSum=-1.169;QD=11.19;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:13,13:26:99:321,0,324
1    214656259    rs77987889    G    A    50.53    QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.811;DB;DP=37;Dels=0.0;FS=17.198;HRun=0;HaplotypeScore=0.9894;MQ=50.39;MQ0=0;MQRankSum=-3.703;QD=1.37;ReadPosRankSum=-0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:30,7:37:80.53:81,0,1105
1    214656268    rs78165379    A    G    33.42    QDFilter2    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=2.035;DB;DP=39;Dels=0.0;FS=12.03;HRun=0;HaplotypeScore=0.9894;MQ=53.35;MQ0=0;MQRankSum=-3.739;QD=0.86;ReadPosRankSum=-0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:31,8:39:63.41:63,0,1092
1    214656277    rs79052802    C    G    173.31    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=43;Dels=0.0;FS=18.014;HRun=0;HaplotypeScore=0.9894;MQ=51.88;MQ0=1;MQRankSum=-4.005;QD=4.03;ReadPosRankSum=-1.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:31,12:43:99:203,0,1122
1    214656298    rs55872127    C    T    269.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.657;DB;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=51.95;MQ0=1;MQRankSum=-5.021;QD=5.0;ReadPosRankSum=-2.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:36,18:54:99:300,0,1256
1    214656333    rs75490133    G    A    454.04    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.072;DB;DP=62;Dels=0.0;FS=9.75;HRun=0;HaplotypeScore=1.9134;MQ=51.36;MQ0=1;MQRankSum=-4.397;QD=7.32;ReadPosRankSum=-0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:35,27:62:99:484,0,1264
1    214656359    rs57780679    T    TC    3442.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=0;HaplotypeScore=593.3645;IndelType=I;MQ=51.23;MQ0=1;QD=40.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    1/1:14,71:78:99:3443,220,0
1    214656362    rs79153607    T    C    581.80    HaplotypeScoreFilter13    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.591;DB;DP=83;Dels=0.0;FS=0.921;HRun=1;HaplotypeScore=45.965;MQ=51.0;MQ0=1;MQRankSum=-5.291;QD=7.01;ReadPosRankSum=1.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:49,34:83:99:612,0,1675
1    214656378    rs75388246    C    T    538.60    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.838;DB;DP=87;Dels=0.0;FS=1.999;HRun=1;HaplotypeScore=0.9734;MQ=52.18;MQ0=0;MQRankSum=-5.958;QD=6.19;ReadPosRankSum=2.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:57,30:87:99:569,0,1865
1    214656413    rs74407488    T    C    371.78    PASS    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=0.247;DB;DP=76;Dels=0.0;FS=3.729;HRun=0;HaplotypeScore=2.6515;MQ=52.96;MQ0=0;MQRankSum=-5.096;QD=4.89;ReadPosRankSum=-1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:52,23:76:99:402,0,1679
1    214656439    rs112508752    CTAA    C    658.29    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=6.308;DB;DP=82;FS=10.774;HRun=0;HaplotypeScore=615.9791;IndelType=D;MQ=52.93;MQ0=0;MQRankSum=-6.078;QD=7.93;ReadPosRankSum=0.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:64,19:82:99:697,0,4108
1    214656464    rs75275552    G    T    169.73    QDFilter2    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.3;DB;DP=94;Dels=0.0;FS=2.422;HRun=1;HaplotypeScore=2.9396;MQ=52.39;MQ0=1;MQRankSum=-6.319;QD=1.81;ReadPosRankSum=0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:67,27:94:99:200,0,2269
1    214656466    rs61745824    C    G    174.36    QDFilter2    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=2.112;DB;DP=94;Dels=0.0;FS=2.367;HRun=0;HaplotypeScore=2.9396;MQ=52.39;MQ0=1;MQRankSum=-6.175;QD=1.85;ReadPosRankSum=0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366956    GT:AD:DP:GQ:PL    0/1:67,27:94:99:204,0,2199
1    214779031    rs76561183    C    A    227.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=21;Dels=0.0;FS=7.991;HRun=0;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;MQRankSum=0.746;QD=10.81;ReadPosRankSum=-0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:12,9:21:99:257,0,398
1    214779347    rs113296548    C    T    336.12    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.349;DB;DP=27;Dels=0.0;FS=3.821;HRun=0;HaplotypeScore=0.0;MQ=41.69;MQ0=0;MQRankSum=0.0;QD=12.45;ReadPosRankSum=0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:12,15:27:99:366,0,237
1    214782129    rs12081395    G    A    413.37    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.661;DB;DP=23;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=0.0;MQ=56.28;MQ0=0;MQRankSum=-0.031;QD=17.97;ReadPosRankSum=0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:9,14:23:99:443,0,249
1    214787430    rs111512847    A    G    30.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=10.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495259    GT:AD:DP:GQ:PL    1/1:0,2:3:5.99:62,6,0
1    214788427    rs41303281    C    T    155.08    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.464;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.752;QD=7.38;ReadPosRankSum=0.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495259    GT:AD:DP:GQ:PL    0/1:15,6:21:99:185,0,435
1    214792249    rs2292378    G    T    41.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464322    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
1    214792349    rs2292377    C    G    171.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=21.48;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464322    GT:AD:DP:GQ:PL    0/1:2,6:8:54.37:202,0,54
1    214804041    rs2292379    C    A    371.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.243;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.712;QD=10.32;ReadPosRankSum=0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:18,18:36:99:402,0,598
1    214811174    rs2280049    G    A    565.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.708;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6637;MQ=59.41;MQ0=0;MQRankSum=-0.876;QD=14.49;ReadPosRankSum=1.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:19,19:39:99:595,0,520
1    214811244    rs2070065    C    G    514.73    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=68;Dels=0.0;FS=1.08;HRun=0;HaplotypeScore=0.9665;MQ=59.66;MQ0=0;MQRankSum=-1.39;QD=7.57;ReadPosRankSum=-0.234;SNPEFF_AMINO_ACID_CHANGE=H494Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214811209_214811344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:46,22:68:99:545,0,1447
1    214813487    rs2070066    A    G    1519.80    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=101;Dels=0.0;FS=1.852;HRun=1;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;MQRankSum=0.393;QD=15.05;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=L602;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:50,51:101:99:1550,0,1645
1    214813782    rs3795524    A    G    575.59    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.614;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.077;QD=17.99;ReadPosRankSum=-0.614;SNPEFF_AMINO_ACID_CHANGE=M701V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:13,19:32:99:606,0,398
1    214813941    rs3795523    C    G    484.80    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.771;DB;DP=42;Dels=0.0;FS=1.26;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.275;QD=11.54;ReadPosRankSum=-0.118;SNPEFF_AMINO_ACID_CHANGE=Q754E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:23,19:42:99:515,0,676
1    214814125    rs3795522    G    A    454.25    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.594;DB;DP=33;Dels=0.0;FS=5.188;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.558;QD=13.77;ReadPosRankSum=-1.243;SNPEFF_AMINO_ACID_CHANGE=R815H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:17,16:33:99:484,0,554
1    214814582    rs3795520    G    A    1581.32    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.711;DB;DP=80;Dels=0.0;FS=3.089;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.134;QD=19.77;ReadPosRankSum=-0.611;SNPEFF_AMINO_ACID_CHANGE=R967;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:30,50:80:99:1611,0,937
1    214814733    rs3795519    T    G    905.83    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.818;DB;DP=66;Dels=0.0;FS=5.61;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.483;QD=13.72;ReadPosRankSum=0.2;SNPEFF_AMINO_ACID_CHANGE=Y1018D;SNPEFF_CODON_CHANGE=Tac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:36,30:66:99:936,0,1168
1    214814778    rs3795518    G    A    600.85    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.199;DB;DP=56;Dels=0.0;FS=2.551;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.169;QD=10.73;ReadPosRankSum=0.286;SNPEFF_AMINO_ACID_CHANGE=G1033R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:35,21:56:99:631,0,1126
1    214814995    rs12067133    C    T    337.94    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.841;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.511;QD=11.26;ReadPosRankSum=0.293;SNPEFF_AMINO_ACID_CHANGE=T1105I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:17,13:30:99:368,0,624
1    214815916    rs3795517    T    C    217.49    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.293;DB;DP=33;Dels=0.0;FS=1.556;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=6.59;ReadPosRankSum=-0.084;SNPEFF_AMINO_ACID_CHANGE=L1412S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:24,9:33:99:247,0,716
1    214816142    rs3795516    T    G    814.13    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=54;Dels=0.0;FS=2.315;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.995;QD=15.08;ReadPosRankSum=-1.151;SNPEFF_AMINO_ACID_CHANGE=L1487;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:26,28:54:99:844,0,814
1    214816224    rs2666839    G    A    788.46    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.458;DB;DP=59;Dels=0.0;FS=1.029;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.163;QD=13.36;ReadPosRankSum=-0.366;SNPEFF_AMINO_ACID_CHANGE=A1515T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:28,31:59:99:818,0,912
1    214816297    rs3795514    A    G    550.02    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=48;Dels=0.0;FS=2.658;HRun=0;HaplotypeScore=1.7046;MQ=58.64;MQ0=0;MQRankSum=-0.488;QD=11.46;ReadPosRankSum=-0.141;SNPEFF_AMINO_ACID_CHANGE=K1539R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214813264_214816667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:29,19:48:99:580,0,901
1    214816715    rs17023338    G    A    609.22    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.706;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.135;QD=14.86;ReadPosRankSum=0.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:19,21:41:99:639,0,507
1    214817856    rs35378637    T    C    334.68    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.492;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=20.92;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:5,11:16:99:365,0,161
1    214818215    rs3748692    G    A    631.17    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.819;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.1101;MQ=59.46;MQ0=0;MQRankSum=-0.126;QD=14.68;ReadPosRankSum=-0.834;SNPEFF_AMINO_ACID_CHANGE=D1768N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:20,23:43:99:661,0,567
1    214818223    rs3748693    T    A    479.96    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=36;Dels=0.0;FS=1.407;HRun=2;HaplotypeScore=1.6634;MQ=59.36;MQ0=0;MQRankSum=-0.149;QD=13.33;ReadPosRankSum=-1.54;SNPEFF_AMINO_ACID_CHANGE=H1770Q;SNPEFF_CODON_CHANGE=caT/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:17,19:36:99:510,0,495
1    214818846    rs3790646    A    G    718.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.231;DB;DP=51;Dels=0.0;FS=1.093;HRun=2;HaplotypeScore=3.2421;MQ=59.63;MQ0=0;MQRankSum=-0.175;QD=14.09;ReadPosRankSum=-0.194;SNPEFF_AMINO_ACID_CHANGE=D1978G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:25,25:51:99:749,0,798
1    214818945    rs3790647    A    C    1129.72    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.352;DB;DP=76;Dels=0.0;FS=0.869;HRun=0;HaplotypeScore=1.9468;MQ=60.0;MQ0=0;MQRankSum=1.896;QD=14.86;ReadPosRankSum=1.843;SNPEFF_AMINO_ACID_CHANGE=E2011A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:36,40:76:99:1160,0,1077
1    214819328    rs3748695    G    A    1003.71    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=78;Dels=0.0;FS=3.152;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.612;QD=12.87;ReadPosRankSum=-0.561;SNPEFF_AMINO_ACID_CHANGE=A2139T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:44,34:78:99:1034,0,1306
1    214819587    rs12058704    A    G    1360.74    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.42;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.567;QD=14.32;ReadPosRankSum=0.25;SNPEFF_AMINO_ACID_CHANGE=Q2225R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:45,50:95:99:1391,0,1472
1    214819980    rs3748696    C    T    890.64    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.411;DB;DP=63;Dels=0.0;FS=6.768;HRun=1;HaplotypeScore=0.8941;MQ=59.63;MQ0=0;MQRankSum=-1.218;QD=14.14;ReadPosRankSum=-0.943;SNPEFF_AMINO_ACID_CHANGE=A2356V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:33,30:63:99:921,0,1157
1    214820299    rs3748698    A    G    1563.81    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.983;DB;DP=151;Dels=0.0;FS=4.972;HRun=1;HaplotypeScore=1.4538;MQ=59.42;MQ0=0;MQRankSum=-0.95;QD=10.36;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=E2462;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:94,57:151:99:1594,0,3070
1    214820494    rs3790648    G    A    574.82    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.535;DB;DP=51;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.6642;MQ=59.63;MQ0=0;MQRankSum=0.293;QD=11.27;ReadPosRankSum=-0.899;SNPEFF_AMINO_ACID_CHANGE=L2527;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:29,21:51:99:605,0,880
1    214820524    rs3790649    T    C    600.89    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.279;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.617;QD=12.78;ReadPosRankSum=0.485;SNPEFF_AMINO_ACID_CHANGE=L2537;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214817900_214820743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:26,21:47:99:631,0,864
1    214821415    rs17023384    A    C    168.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=14.07;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:6,6:12:99:199,0,200
1    214821456    rs11805402    C    G    99.33    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=9.03;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,227
1    214821680    rs10494984    G    C    350.05    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.463;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.03;MQ0=0;MQRankSum=-0.637;QD=14.59;ReadPosRankSum=0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:13,11:24:99:380,0,453
1    214821699    rs3830483    TA    T    305.46    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=4.234;DB;DP=28;FS=0.0;HRun=2;HaplotypeScore=115.9751;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=0.612;QD=10.91;ReadPosRankSum=0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:17,11:28:99:344,0,669
1    214821959    rs11120372    G    A    757.54    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.351;DB;DP=47;Dels=0.0;FS=2.621;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-1.479;QD=16.12;ReadPosRankSum=-1.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    0/1:24,23:47:99:788,0,795
1    214826196    rs335524    G    A    1938.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.55;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=R128Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214826171_214826332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391896    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1972,144,0
1    214826364    rs335523    G    A    2155.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2188,166,0
1    214828812    rs435043    A    G    715.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391896    GT:AD:DP:GQ:PL    1/1:0,19:19:57.16:748,57,0
1    214828967    rs448989    A    G    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391896    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    214829010    rs387535    G    A    34.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=17.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
1    214830142    rs376776    A    T    254.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.53;MQ0=0;QD=36.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391896    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
1    214830165    rs79230299    TA    T    155.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=11;HaplotypeScore=53.6716;IndelType=D;MQ=62.13;MQ0=0;QD=15.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391896    GT:AD:DP:GQ:PL    1/1:0,10:10:23.95:197,24,0
1    214830617    rs438034    A    G    1809.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=37.7;SNPEFF_AMINO_ACID_CHANGE=R2943G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214830276_214830752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1843,135,0
1    214830908    rs417844    A    G    218.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391896    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
1    214837110    rs7289    C    G    685.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=N3106K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_214836934_214837931;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366955    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:719,54,0
1    215063204    rs1244994    G    A    90.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC114496.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408793    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    215256537    .    TC    T    394.60    PASS    AC=2;AF=1.00;AN=2;DP=18;FS=0.0;HRun=9;HaplotypeScore=59.323;IndelType=D;MQ=61.78;MQ0=0;QD=21.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KCNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366948    GT:AD:DP:GQ:PL    1/1:2,16:18:48.02:437,48,0
1    215256888    rs61818297    G    A    104.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KCNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366948    GT:AD:DP:GQ:PL    1/1:0,4:5:12.03:137,12,0
1    215368514    rs1556907    A    G    1003.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KCNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470177    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1036,75,0
1    215408057    rs11120527    G    T    664.44    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.556;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-0.013;QD=16.21;ReadPosRankSum=-0.928;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KCNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366948    GT:AD:DP:GQ:PL    0/1:19,22:41:99:694,0,637
1    215753355    rs11803705    T    G    328.18    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.074;DB;DP=33;Dels=0.0;FS=3.764;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.46;QD=9.94;ReadPosRankSum=-0.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259154    GT:AD:DP:GQ:PL    0/1:19,14:33:99:358,0,550
1    215781574    rs3767255    A    G    428.83    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.073;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=1.432;QD=15.88;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259154    GT:AD:DP:GQ:PL    0/1:13,14:27:99:459,0,428
1    215793834    rs14137    G    A    1159.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.512;DB;DP=91;Dels=0.0;FS=0.797;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.74;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=A774;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_215793399_215795073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259154    GT:AD:DP:GQ:PL    0/1:49,42:91:99:1189,0,1448
1    215848062    rs2009923    C    T    403.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.995;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=12.61;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=E4397;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_215847442_215848958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:16,16:32:99:433,0,463
1    215848587    rs2797234    T    C    752.14    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=0.011;DB;DP=47;Dels=0.0;FS=1.45;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.163;QD=16.0;ReadPosRankSum=-1.442;SNPEFF_AMINO_ACID_CHANGE=T4222;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_215847442_215848958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:19,28:47:99:782,0,602
1    215848641    rs2797235    T    C    2468.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7229;MQ=59.19;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=T4204;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_215847442_215848958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2502,196,0
1    215849044    rs4443864    C    G    124.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=12.49;ReadPosRankSum=2.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:5,5:10:99:155,0,178
1    215853357    rs10864183    G    A    65.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=6.54;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:6,4:10:95.44:95,0,204
1    215853748    rs11307320    GT    G    867.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=12;HaplotypeScore=139.201;IndelType=D;MQ=59.83;MQ0=0;QD=19.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    1/1:5,39:44:99:909,118,0
1    215853835    rs12140451    A    G    81.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.07;MQ0=0;MQRankSum=0.729;QD=8.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:6,4:10:99:112,0,173
1    215914646    rs6694510    T    A    557.47    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.494;DB;DP=40;Dels=0.0;FS=6.591;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.975;QD=13.94;ReadPosRankSum=-0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:21,19:40:99:587,0,764
1    215914826    rs35309576    T    C    1082.42    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.749;DB;DP=89;Dels=0.0;FS=2.991;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=1.13;QD=12.16;ReadPosRankSum=1.294;SNPEFF_AMINO_ACID_CHANGE=M3868V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_215914717_215914879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:53,36:89:99:1112,0,1812
1    215916563    rs11120616    G    A    1006.70    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.564;DB;DP=79;Dels=0.0;FS=0.882;HRun=1;HaplotypeScore=1.6624;MQ=60.0;MQ0=0;MQRankSum=-1.629;QD=12.74;ReadPosRankSum=-0.448;SNPEFF_AMINO_ACID_CHANGE=T3835I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_215916519_215916677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:43,36:79:99:1037,0,1275
1    215955937    rs6665799    T    G    41.32    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=10.33;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:71,0,31
1    215956304    rs7518466    A    G    343.15    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.135;DB;DP=22;Dels=0.0;FS=2.643;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.668;QD=15.6;ReadPosRankSum=0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:9,13:22:99:373,0,295
1    215960153    .    A    C    74.05    QDFilter2    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.781;DP=43;Dels=0.0;FS=38.085;HRun=2;HaplotypeScore=0.5784;MQ=54.39;MQ0=0;MQRankSum=0.29;QD=1.72;ReadPosRankSum=0.058;SNPEFF_AMINO_ACID_CHANGE=C3416G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_215960012_215960216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:16,27:43:99:104,0,290
1    215960167    rs10864198    T    G    482.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.25;MQ0=0;MQRankSum=0.203;QD=11.49;ReadPosRankSum=1.366;SNPEFF_AMINO_ACID_CHANGE=E3411A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_215960012_215960216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:21,21:42:99:513,0,592
1    216040589    rs41277196    T    G    102.18    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=7.86;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:7,6:13:99:132,0,265
1    216073289    rs56074952    G    T    201.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.739;QD=14.37;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:6,8:14:99:231,0,206
1    216219781    rs6657250    A    G    1173.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=I2106T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_216219773_216219934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1207,87,0
1    216246675    rs71556647    AG    A    661.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=3;HaplotypeScore=54.4918;IndelType=D;MQ=61.13;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:703,57,0
1    216258213    rs56222536    A    G    1273.17    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.88;DB;DP=82;Dels=0.0;FS=0.992;HRun=2;HaplotypeScore=3.3972;MQ=59.77;MQ0=0;MQRankSum=0.242;QD=15.53;ReadPosRankSum=-0.084;SNPEFF_AMINO_ACID_CHANGE=I1665T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_216258040_216258219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:38,44:82:99:1303,0,1082
1    216270618    rs7540411    G    A    237.57    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.359;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.514;QD=6.09;ReadPosRankSum=0.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:28,11:39:99:268,0,985
1    216370108    rs447102    C    T    288.31    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=13;Dels=0.0;FS=5.119;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=22.18;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:4,9:13:99:318,0,100
1    216370130    rs386851    T    G    113.15    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.16;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:2,5:7:49.86:143,0,50
1    216371934    rs646094    A    C    378.01    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=29;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=13.03;ReadPosRankSum=-0.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:15,14:29:99:408,0,510
1    216495191    rs7515253    T    G    446.77    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.645;DB;DP=49;Dels=0.0;FS=9.232;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.59;QD=9.12;ReadPosRankSum=-1.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:27,22:49:99:477,0,866
1    216495400    rs2089947    A    G    102.30    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=9.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:7,4:11:99:132,0,256
1    216496947    rs1805050    G    A    989.30    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.51;DB;DP=59;Dels=0.0;FS=7.373;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.936;QD=16.77;ReadPosRankSum=0.449;SNPEFF_AMINO_ACID_CHANGE=T473;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_216496816_216497037;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:27,32:59:99:1019,0,839
1    216500830    rs1339963    G    C    707.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:741,54,0
1    216538391    rs45500891    C    T    451.21    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=2.668;DB;DP=55;Dels=0.0;FS=2.603;HRun=0;HaplotypeScore=0.8321;MQ=59.58;MQ0=0;MQRankSum=-0.337;QD=8.2;ReadPosRankSum=0.301;SNPEFF_AMINO_ACID_CHANGE=V230M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_216538295_216538427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:38,17:55:99:481,0,1181
1    216538507    rs45594833    A    G    94.32    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.415;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.807;QD=6.29;ReadPosRankSum=1.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:11,4:15:99:124,0,355
1    216592003    rs4253963    T    C    570.52    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.603;DB;DP=59;Dels=0.0;FS=1.093;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=9.67;ReadPosRankSum=0.618;SNPEFF_AMINO_ACID_CHANGE=T168;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_216591856_216592021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:33,26:59:99:601,0,1148
1    216595306    rs10779261    C    T    646.25    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.137;DB;DP=52;Dels=0.0;FS=1.088;HRun=0;HaplotypeScore=2.2282;MQ=58.83;MQ0=0;MQRankSum=1.621;QD=12.43;ReadPosRankSum=-0.405;SNPEFF_AMINO_ACID_CHANGE=A125T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_216595194_216595882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USH2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307340    GT:AD:DP:GQ:PL    0/1:29,23:52:99:676,0,939
1    216692669    rs945453    C    T    483.72    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=44;Dels=0.0;FS=2.786;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=0.94;QD=10.99;ReadPosRankSum=-0.434;SNPEFF_AMINO_ACID_CHANGE=S257;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_216692494_216692763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463665    GT:AD:DP:GQ:PL    0/1:27,17:44:99:514,0,769
1    216737861    rs11117622    G    T    66.74    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.53;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354407    GT:AD:DP:GQ:PL    0/1:4,3:7:96.73:97,0,143
1    216741314    rs11572766    C    T    409.13    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DB;DP=25;Dels=0.0;FS=5.226;HRun=0;HaplotypeScore=2.0641;MQ=57.17;MQ0=0;MQRankSum=0.29;QD=16.37;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354407    GT:AD:DP:GQ:PL    0/1:11,14:25:99:439,0,348
1    216824505    rs10863261    C    G    206.72    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=21;Dels=0.0;FS=5.929;HRun=0;HaplotypeScore=0.9665;MQ=58.89;MQ0=0;MQRankSum=0.27;QD=9.84;ReadPosRankSum=-2.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354407    GT:AD:DP:GQ:PL    0/1:13,8:21:99:237,0,430
1    216896444    rs2813709    A    G    149.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354407    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
1    217665204    rs60848416    CT    C    36.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=17;HaplotypeScore=68.7613;IndelType=D;MQ=55.01;MQ0=0;QD=3.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470014    GT:AD:DP:GQ:PL    1/1:3,5:10:15.66:78,16,0
1    217671771    rs724803    C    G    1460.02    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.957;DB;DP=130;Dels=0.0;FS=2.297;HRun=0;HaplotypeScore=3.6408;MQ=59.65;MQ0=0;MQRankSum=0.629;QD=11.23;ReadPosRankSum=-0.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366935    GT:AD:DP:GQ:PL    0/1:76,53:130:99:1490,0,2323
1    217793938    rs111668135    T    TTAA    432.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=37.906;IndelType=I;MQ=61.78;MQ0=0;MQRankSum=0.6;QD=36.0;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366934    GT:AD:DP:GQ:PL    0/1:4,8:12:99:471,0,160
1    217822135    rs12140261    G    A    295.63    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.279;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8305;MQ=58.84;MQ0=0;MQRankSum=-0.684;QD=14.78;ReadPosRankSum=-0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366933    GT:AD:DP:GQ:PL    0/1:9,11:20:99:326,0,320
1    217856787    rs71301099    A    AT    620.02    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.855;DB;DP=39;FS=0.0;HRun=7;HaplotypeScore=80.6427;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=-1.418;QD=15.9;ReadPosRankSum=0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366933    GT:AD:DP:GQ:PL    0/1:18,21:39:99:659,0,274
1    217915593    rs12117870    G    A    213.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.295;QD=14.25;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366933    GT:AD:DP:GQ:PL    0/1:6,9:15:99:244,0,196
1    217947738    rs6604561    G    A    1181.64    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=106;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8332;MQ=59.56;MQ0=0;MQRankSum=0.811;QD=11.15;ReadPosRankSum=1.932;SNPEFF_AMINO_ACID_CHANGE=Q194;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_217947676_217947879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366933    GT:AD:DP:GQ:PL    0/1:63,43:106:99:1212,0,2094
1    218475533    rs2251169    C    T    101.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=10.18;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366932    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,224
1    218607561    .    C    A    47.17    QDFilter2    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.833;DP=80;Dels=0.0;FS=6.463;HRun=2;HaplotypeScore=10.6616;MQ=57.66;MQ0=0;MQRankSum=-0.749;QD=0.59;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366929    GT:AD:DP:GQ:PL    0/1:59,21:80:77.16:77,0,982
1    219366400    rs60036848    T    TG    578.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=9;HaplotypeScore=169.2565;IndelType=I;MQ=57.48;MQ0=0;QD=20.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPLAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366927    GT:AD:DP:GQ:PL    1/1:5,21:28:59.73:621,60,0
1    219383848    rs5781096    A    ACTTTTT    3533.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=376.5855;IndelType=I;MQ=33.29;MQ0=0;QD=92.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPLAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366927    GT:AD:DP:GQ:PL    1/1:12,22:38:99:3533,111,0
1    219383867    rs940571    T    C    1083.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.68;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPLAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366927    GT:AD:DP:GQ:PL    1/1:0,43:43:96.27:1117,96,0
1    219383905    rs940570    A    G    1717.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=46.3;MQ0=0;QD=30.67;SNPEFF_AMINO_ACID_CHANGE=I115M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_219383874_219383989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPLAL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366927    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1750,141,0
1    219706428    rs10746385    T    C    566.67    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.64;DB;DP=43;Dels=0.0;FS=11.766;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.522;QD=13.18;ReadPosRankSum=-0.984;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,21:43:99:597,0,607
1    219783279    rs79789352    T    A    1826.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.12;MQ0=18;QD=21.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZC3H11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367211    GT:AD:DP:GQ:PL    1/1:0,85:85:99:1860,177,0
1    219836708    rs2153007    A    G    1382.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.03;MQ0=0;QD=28.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC096643.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516431    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1416,108,0
1    219836722    rs2153006    G    A    1157.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=29.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC096643.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516431    GT:AD:DP:GQ:PL    1/1:0,39:39:90.29:1191,90,0
1    220089352    rs2231734    A    C    622.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.633;DB;DP=40;Dels=0.0;FS=1.481;HRun=1;HaplotypeScore=0.9469;MQ=58.84;MQ0=0;MQRankSum=-0.65;QD=15.55;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC30A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366926    GT:AD:DP:GQ:PL    0/1:15,25:40:99:652,0,491
1    220101133    rs79328219    C    T    32.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=10.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC30A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366926    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:62,0,34
1    220142023    rs1061248    C    T    113.41    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.68;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468487    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:143,0,27
1    220142070    rs1061242    C    T    236.62    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=15.77;ReadPosRankSum=0.428;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468487    GT:AD:DP:GQ:PL    0/1:7,8:15:99:267,0,246
1    220142612    rs2270712    C    T    72.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:102,0,28
1    220142671    rs3816993    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    220145272    rs1982987    C    T    141.14    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=23.52;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:171,0,23
1    220145371    rs2795315    T    G    2075.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2108,157,0
1    220145584    rs1982986    C    T    120.42    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=7.53;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    0/1:11,5:16:99:150,0,349
1    220145637    rs1982985    A    G    120.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=20.01;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    0/1:2,4:6:62.49:150,0,62
1    220151808    rs3215088    C    CAA    322.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.339;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=35.0499;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=0.663;QD=23.07;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485821    GT:AD:DP:GQ:PL    0/1:7,6:14:99:362,0,301
1    220152251    rs2647438    C    T    124.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485821    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    220152718    .    G    T    154.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.001;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.8809;MQ=54.32;MQ0=0;MQRankSum=-0.91;QD=9.09;ReadPosRankSum=-0.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485821    GT:AD:DP:GQ:PL    1/1:4,13:17:20.99:187,21,0
1    220153332    rs3835619    T    TAA    2619.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=2;HaplotypeScore=123.9428;IndelType=I;MQ=61.71;MQ0=0;QD=52.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485821    GT:AD:DP:GQ:PL    1/1:1,46:50:99:2661,147,0
1    220154246    rs71781404    AT    A    125.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=34.4766;IndelType=D;MQ=59.87;MQ0=0;QD=12.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485821    GT:AD:DP:GQ:PL    1/1:3,7:10:22.94:167,23,0
1    220154306    rs11118480    A    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485821    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    220154602    rs1694599    T    C    482.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.73;MQ0=0;QD=37.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485821    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:516,39,0
1    220154659    rs71776489    TAAA    T    424.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DB;DP=29;FS=0.0;HRun=17;HaplotypeScore=225.0324;IndelType=D;MQ=54.07;MQ0=0;MQRankSum=1.156;QD=14.64;ReadPosRankSum=1.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485821    GT:AD:DP:GQ:PL    1/1:8,19:29:46.11:467,46,0
1    220154768    rs1061160    C    T    448.43    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.547;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.94;MQ0=0;MQRankSum=0.287;QD=8.3;ReadPosRankSum=-1.215;SNPEFF_AMINO_ACID_CHANGE=Q1135;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_220154720_220154799;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    0/1:34,20:54:99:478,0,1131
1    220155920    rs2133194    G    A    99.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=57.05;MQ0=0;MQRankSum=0.421;QD=12.4;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,130
1    220156090    rs2647462    T    C    3058.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.74;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3092,238,0
1    220156427    rs1391566    T    C    282.30    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=17.64;ReadPosRankSum=-1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    0/1:6,10:16:99:312,0,205
1    220160360    rs2647435    A    G    586.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,18:18:54.13:619,54,0
1    220160433    rs2647434    A    G    1612.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5733;MQ=58.55;MQ0=0;MQRankSum=1.582;QD=33.6;ReadPosRankSum=1.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1646,123,0
1    220162195    rs2254494    T    C    947.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:980,72,0
1    220174732    rs1694575    C    T    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
1    220174740    rs4379680    C    T    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
1    220178717    rs113053091    T    TA    1368.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=3;HaplotypeScore=87.5697;IndelType=I;MQ=59.93;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:5,34:39:99:1411,102,0
1    220179322    rs2647420    A    T    274.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
1    220184150    rs67844648    CA    C    95.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=17;HaplotypeScore=64.8416;IndelType=D;MQ=59.88;MQ0=0;QD=8.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:2,8:11:25.23:138,25,0
1    220192495    rs2245457    C    G    839.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:873,63,0
1    220197545    rs2577159    C    T    320.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:353,27,0
1    220197625    rs2230301    G    T    960.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=D308E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_220197606_220197798;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,30:30:72.24:993,72,0
1    220203596    rs2270711    T    C    70.22    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=14.04;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477030    GT:AD:DP:GQ:PL    0/1:1,4:5:29.19:100,0,29
1    220205943    rs2789816    G    A    691.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:724,54,0
1    220205980    rs2577138    A    C    360.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:393,30,0
1    220206690    rs2577137    G    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=17.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:122,9,0
1    220207017    rs2647456    C    T    1093.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.25;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,31:31:84.25:1126,84,0
1    220208049    rs2577136    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    220208154    rs2789817    C    A    451.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:484,36,0
1    220208492    rs2647454    T    C    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366923    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
1    220231180    rs34887640    CT    C    467.32    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=4.101;DB;DP=41;FS=1.242;HRun=1;HaplotypeScore=119.0581;IndelType=D;MQ=59.44;MQ0=0;MQRankSum=1.502;QD=11.4;ReadPosRankSum=-0.69;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPNT1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000302686    GT:AD:DP:GQ:PL    0/1:26,15:41:99:506,0,1125
1    220232797    rs904328    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463953    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
1    220307676    rs35775533    A    G    102.85    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.032;QD=4.9;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302637    GT:AD:DP:GQ:PL    0/1:16,5:21:99:133,0,556
1    220314945    rs10442693    G    A    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488777    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    220772897    rs2589592    A    G    35.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366917    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
1    220789236    rs2786599    C    T    1328.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366917    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1362,105,0
1    220789355    rs67840018    AT    A    540.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=7;HaplotypeScore=184.4856;IndelType=D;MQ=60.86;MQ0=0;QD=15.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366917    GT:AD:DP:GQ:PL    1/1:14,22:36:74.54:583,75,0
1    220789362    rs12137627    T    A    108.53    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=1.867;DB;DP=30;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=20.0641;MQ=61.03;MQ0=0;MQRankSum=-0.138;QD=3.62;ReadPosRankSum=1.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366917    GT:AD:DP:GQ:PL    1/1:3,27:30:15.02:141,15,0
1    220808921    rs10746403    T    C    454.21    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=46;Dels=0.0;FS=1.358;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.64;QD=9.87;ReadPosRankSum=-0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366917    GT:AD:DP:GQ:PL    0/1:25,21:46:99:484,0,763
1    220824115    rs12123306    G    C    538.39    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.195;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9648;MQ=58.99;MQ0=0;MQRankSum=1.138;QD=11.7;ReadPosRankSum=-0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366917    GT:AD:DP:GQ:PL    0/1:26,19:46:99:568,0,890
1    220825523    rs3737296    A    G    466.11    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=43;Dels=0.0;FS=1.789;HRun=0;HaplotypeScore=0.9867;MQ=59.46;MQ0=0;MQRankSum=-0.35;QD=10.84;ReadPosRankSum=1.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366917    GT:AD:DP:GQ:PL    0/1:27,16:43:99:496,0,839
1    220935081    rs2275575    G    A    635.35    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=3.664;DB;DP=44;Dels=0.0;FS=6.74;HRun=0;HaplotypeScore=0.9578;MQ=59.58;MQ0=0;MQRankSum=0.793;QD=14.44;ReadPosRankSum=1.322;SNPEFF_AMINO_ACID_CHANGE=A176;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_220935000_220935162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MOSC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359316    GT:AD:DP:GQ:PL    0/1:23,21:44:99:665,0,672
1    220936568    rs11118597    G    A    61.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=12.24;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MOSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496078    GT:AD:DP:GQ:PL    0/1:2,3:5:61.73:91,0,62
1    220970028    rs2642438    A    G    508.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.24;SNPEFF_AMINO_ACID_CHANGE=T165A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_220969985_220970147;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOSC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366910    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:541,45,0
1    220986516    rs12144830    C    G    1132.11    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.587;DB;DP=85;Dels=0.0;FS=6.809;HRun=3;HaplotypeScore=1.873;MQ=59.46;MQ0=0;MQRankSum=-0.935;QD=13.32;ReadPosRankSum=0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443880    GT:AD:DP:GQ:PL    0/1:46,39:85:99:1162,0,1383
1    221912361    rs1141714    T    C    811.75    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=63;Dels=0.0;FS=7.004;HRun=0;HaplotypeScore=3.2897;MQ=59.63;MQ0=0;MQRankSum=-1.539;QD=12.88;ReadPosRankSum=1.237;SNPEFF_AMINO_ACID_CHANGE=E187;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_221912276_221912783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418487    GT:AD:DP:GQ:PL    0/1:29,30:63:99:842,0,826
1    222697088    rs3748662    G    A    123.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=6.83;ReadPosRankSum=-2.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:12,6:18:99:153,0,401
1    222700416    rs1487523    C    T    314.77    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.453;QD=19.67;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:5,11:16:99:345,0,143
1    222705270    rs4846373    T    C    276.10    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.56;DB;DP=22;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.615;QD=12.55;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:12,10:22:99:306,0,437
1    222713503    rs3748664    C    G    733.42    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.064;DB;DP=44;Dels=0.0;FS=15.45;HRun=1;HaplotypeScore=1.5317;MQ=59.48;MQ0=0;MQRankSum=-0.674;QD=16.67;ReadPosRankSum=0.801;SNPEFF_AMINO_ACID_CHANGE=T433;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222713352_222713683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:19,25:44:99:763,0,527
1    222713631    rs3748666    G    C    612.01    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=51;Dels=0.0;FS=2.422;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.431;QD=12.0;ReadPosRankSum=1.388;SNPEFF_AMINO_ACID_CHANGE=H391D;SNPEFF_CODON_CHANGE=Cat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222713352_222713683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:30,21:51:99:642,0,970
1    222713750    rs3828079    G    A    261.19    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.329;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=16.32;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:7,9:16:99:291,0,240
1    222715139    rs35455442    C    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    222715247    rs11487812    A    G    286.36    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=17.9;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:6,10:16:99:316,0,191
1    222717698    rs17163185    T    C    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:70,0,63
1    222721288    rs4846382    C    T    425.81    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.748;DB;DP=42;Dels=0.0;FS=1.247;HRun=0;HaplotypeScore=1.9559;MQ=59.45;MQ0=0;MQRankSum=-0.965;QD=10.14;ReadPosRankSum=-1.672;SNPEFF_AMINO_ACID_CHANGE=L33;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222721066_222721445;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343410    GT:AD:DP:GQ:PL    0/1:24,18:42:99:456,0,790
1    222734662    rs149239943    TC    T    236.68    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=20;FS=3.056;HRun=1;HaplotypeScore=50.8782;IndelType=D;MQ=56.45;MQ0=0;MQRankSum=-1.582;QD=11.83;ReadPosRankSum=0.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391883    GT:AD:DP:GQ:PL    0/1:12,8:20:99:276,0,501
1    222734803    rs1134898    G    C    807.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.081;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-3.093;QD=17.94;ReadPosRankSum=0.29;SNPEFF_AMINO_ACID_CHANGE=G267;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222734706_222734860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366890    GT:AD:DP:GQ:PL    0/1:18,27:45:99:837,0,506
1    222736405    rs11485179    A    G    357.62    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=14.9;ReadPosRankSum=2.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391883    GT:AD:DP:GQ:PL    0/1:13,11:24:99:388,0,478
1    222737265    rs35877231    G    T    259.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480065    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
1    222737568    rs3008640    C    T    621.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480065    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:655,48,0
1    222742676    rs4846766    T    C    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465263    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:70,0,67
1    222751034    rs2936033    T    C    232.76    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.354;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.85;QD=10.12;ReadPosRankSum=-0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350027    GT:AD:DP:GQ:PL    0/1:14,9:23:99:263,0,481
1    222761601    rs1024065    T    C    120.94    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.19;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350027    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:151,0,28
1    222761649    rs4525045    C    A    171.03    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=10.69;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350027    GT:AD:DP:GQ:PL    0/1:9,7:16:99:201,0,310
1    222798106    rs3008617    G    A    795.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:829,60,0
1    222802006    rs2936053    A    G    4517.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=35.3;SNPEFF_AMINO_ACID_CHANGE=K482E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222800917_222803731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4518,340,0
1    222802376    rs2936052    A    G    1259.74    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.052;DB;DP=74;Dels=0.0;FS=5.322;HRun=0;HaplotypeScore=0.9159;MQ=59.75;MQ0=0;MQRankSum=0.909;QD=17.02;ReadPosRankSum=0.504;SNPEFF_AMINO_ACID_CHANGE=K605R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222800917_222803731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    0/1:31,43:74:99:1290,0,1000
1    222802803    rs3748626    T    G    848.61    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=63;Dels=0.0;FS=1.032;HRun=3;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.726;QD=13.47;ReadPosRankSum=-1.183;SNPEFF_AMINO_ACID_CHANGE=P747;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222800917_222803731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    0/1:28,35:63:99:879,0,904
1    222802926    rs3008620    C    T    1426.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.66;SNPEFF_AMINO_ACID_CHANGE=S788;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222800917_222803731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1459,111,0
1    222803204    rs2936051    A    G    177.29    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.549;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.803;QD=8.86;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=E881G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222800917_222803731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    0/1:12,7:20:99:207,0,434
1    222805698    rs3008622    T    G    945.62    PASS    AB=0.365;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=52;Dels=0.0;FS=1.366;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.293;QD=18.19;ReadPosRankSum=-0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    0/1:19,33:52:99:976,0,566
1    222806218    rs17163345    A    G    228.28    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=15.22;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    0/1:7,8:15:99:258,0,236
1    222817799    rs17531007    C    T    180.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=18.02;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    0/1:4,6:10:83.87:210,0,84
1    222821211    rs61824282    C    T    245.31    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=14.43;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470521    GT:AD:DP:GQ:PL    0/1:9,8:17:99:275,0,325
1    222823529    rs17465637    A    C    594.15    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.837;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.584;QD=11.65;ReadPosRankSum=0.679;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470521    GT:AD:DP:GQ:PL    0/1:30,21:51:99:624,0,936
1    222823738    .    GT    G    135.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.942;DP=24;FS=0.0;HRun=14;HaplotypeScore=136.7897;IndelType=D;MQ=58.05;MQ0=0;MQRankSum=0.404;QD=5.64;ReadPosRankSum=0.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467190    GT:AD:DP:GQ:PL    1/1:16,8:24:7.67:176,8,0
1    222823743    rs67180937    T    G    128.12    HaplotypeScoreFilter13    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.105;DB;DP=24;Dels=0.0;FS=2.326;HRun=0;HaplotypeScore=13.2702;MQ=58.05;MQ0=0;MQRankSum=0.595;QD=5.34;ReadPosRankSum=0.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467190    GT:AD:DP:GQ:PL    0/1:18,6:24:99:158,0,153
1    222825403    rs3002150    G    A    966.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467190    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:1000,72,0
1    222825717    rs10495198    T    C    302.20    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.137;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.498;QD=12.59;ReadPosRankSum=0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467190    GT:AD:DP:GQ:PL    0/1:14,10:24:99:332,0,503
1    222825761    rs2936019    G    A    452.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467190    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:485,39,0
1    222826481    rs2291832    G    A    591    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.414;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.211;QD=15.15;ReadPosRankSum=1.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467190    GT:AD:DP:GQ:PL    0/1:20,19:39:99:621,0,510
1    222832295    rs2291834    T    C    317.72    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=16.72;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284471    GT:AD:DP:GQ:PL    0/1:8,11:19:99:348,0,263
1    222833601    rs3002153    T    C    1304.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7653;MQ=59.45;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=P1627;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222833519_222833656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320831    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1337,102,0
1    222837594    rs2270707    G    A    382.73    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.615;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.231;QD=17.4;ReadPosRankSum=-0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340020    GT:AD:DP:GQ:PL    0/1:10,12:22:99:413,0,349
1    222837939    rs17465982    G    A    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340020    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    222838216    rs2936026    C    T    1393.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.6671;MQ=58.58;MQ0=0;QD=30.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340020    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1427,114,0
1    222846882    rs12138316    G    A    129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340020    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
1    222860734    rs3008638    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340020    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
1    222919748    rs2378606    G    A    432.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360827    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:465,36,0
1    222919895    rs2378607    T    G    2379.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_AMINO_ACID_CHANGE=I3S;SNPEFF_CODON_CHANGE=aTt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222919873_222920061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360827    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2412,178,0
1    222923001    rs2068814    A    G    457.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434700    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:491,42,0
1    222923351    rs6683071    A    G    1341.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=Q143R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_222923263_222923538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360827    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1375,108,0
1    223152868    rs1815607    G    A    1620.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284476    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1654,123,0
1    223156214    rs2926160    C    T    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360254    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
1    223156382    rs2926159    C    T    2322.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.65;MQ0=0;QD=35.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360254    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2356,175,0
1    223156653    rs4388710    C    T    170.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360254    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
1    223176275    rs61738819    G    A    1079.81    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.744;DB;DP=81;Dels=0.0;FS=1.905;HRun=1;HaplotypeScore=0.9789;MQ=59.48;MQ0=0;MQRankSum=-0.668;QD=13.33;ReadPosRankSum=0.507;SNPEFF_AMINO_ACID_CHANGE=V512;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223175727_223179337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DISP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284476    GT:AD:DP:GQ:PL    0/1:44,37:81:99:1110,0,1294
1    223178478    rs9441940    G    A    1403.76    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=4.419;DB;DP=77;Dels=0.0;FS=2.03;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=-1.018;QD=18.23;ReadPosRankSum=0.098;SNPEFF_AMINO_ACID_CHANGE=A1247T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223175727_223179337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DISP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284476    GT:AD:DP:GQ:PL    0/1:32,45:77:99:1434,0,914
1    223178561    rs9441941    A    C    3443.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.445;MQ=59.79;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=P1274;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223175727_223179337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DISP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284476    GT:AD:DP:GQ:PL    1/1:0,109:110:99:3444,271,0
1    223283910    rs7512943    A    G    2307.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=F822L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223283707_223286377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342210    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2340,175,0
1    223284528    rs5744174    A    G    533.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.527;QD=13.33;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=F616L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223283707_223286377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342210    GT:AD:DP:GQ:PL    0/1:20,20:40:99:563,0,671
1    223284599    rs2072493    T    C    285.68    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=21;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=1.8633;MQ=60.0;MQ0=0;MQRankSum=-0.599;QD=13.6;ReadPosRankSum=-1.584;SNPEFF_AMINO_ACID_CHANGE=N592S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223283707_223286377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342210    GT:AD:DP:GQ:PL    0/1:10,11:21:99:316,0,346
1    223712863    rs75851519    C    A    381.39    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.529;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=15.26;ReadPosRankSum=-0.897;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    0/1:12,13:25:99:411,0,399
1    223716349    rs4072246    G    A    772.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:805,60,0
1    223716508    rs4072247    C    T    1035.77    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.494;DB;DP=76;Dels=0.0;FS=0.89;HRun=2;HaplotypeScore=1.2434;MQ=59.39;MQ0=0;MQRankSum=0.228;QD=13.63;ReadPosRankSum=0.366;SNPEFF_AMINO_ACID_CHANGE=E137K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223716470_223716528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430824    GT:AD:DP:GQ:PL    0/1:40,36:76:99:1066,0,1033
1    223717379    rs61823524    A    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    223717484    rs34158997    G    A    133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=L111;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223717429_223717545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430824    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    223718462    rs61823525    G    A    135.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
1    223718518    rs61823552    C    A    623.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:657,48,0
1    223718651    rs61823553    G    A    749.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.024;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.158;QD=20.83;ReadPosRankSum=-0.285;SNPEFF_AMINO_ACID_CHANGE=T45M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223718593_223718661;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430824    GT:AD:DP:GQ:PL    0/1:12,24:36:99:780,0,353
1    223718670    rs61823554    G    A    663.25    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.448;QD=22.87;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    0/1:9,20:29:99:693,0,253
1    223722609    rs76861777    G    A    495.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.579;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.95;MQ0=0;MQRankSum=0.25;QD=19.84;ReadPosRankSum=0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    0/1:10,15:25:99:526,0,332
1    223722646    rs34630115    T    TA    1069.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;DB;DP=47;FS=0.0;HRun=12;HaplotypeScore=233.2766;IndelType=I;MQ=59.05;MQ0=0;MQRankSum=-0.38;QD=22.75;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    1/1:6,41:47:99:1111,101,0
1    223722780    rs34606532    G    A    940.81    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.528;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.179;MQ=58.67;MQ0=0;MQRankSum=0.95;QD=13.44;ReadPosRankSum=-0.853;SNPEFF_AMINO_ACID_CHANGE=R538*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_223722759_223722925;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    0/1:40,30:70:99:971,0,1112
1    223810318    rs61825177    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525760    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    223813586    rs35539373    G    T    786.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=S245Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223813507_223813590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:819,63,0
1    223814543    rs35469136    T    G    83.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525760    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
1    223814671    rs61825208    A    T    595.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525760    GT:AD:DP:GQ:PL    1/1:0,18:18:54.11:628,54,0
1    223815575    rs34187970    G    A    247.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=27.47;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    1/1:1,8:9:21.07:280,21,0
1    223816322    rs66602040    A    G    643.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.882;DB;DP=54;Dels=0.0;FS=1.275;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-2.3;QD=11.91;ReadPosRankSum=1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    0/1:33,21:54:99:673,0,1041
1    223816347    rs61825210    A    G    682.35    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.972;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.194;QD=10.18;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    0/1:38,29:67:99:712,0,1061
1    223816455    rs183269164    G    A    645.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=44;Dels=0.0;FS=8.29;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=14.68;ReadPosRankSum=-0.012;SNPEFF_AMINO_ACID_CHANGE=A112V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223816364_223816482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    0/1:22,22:44:99:676,0,608
1    223816577    rs61825211    T    C    47.32    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=6.76;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    0/1:4,3:7:77.31:77,0,145
1    223853440    rs10916015    A    G    149.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366872    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
1    223900408    rs25655    C    G    119.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_AMINO_ACID_CHANGE=D22E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223900034_223900579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295006    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:152,12,0
1    223905532    rs3738383    G    A    888.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=L102;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223905464_223905533;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295006    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:922,69,0
1    223931648    rs1222137    T    C    459.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295006    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:493,36,0
1    223933313    rs1222134    A    T    223.15    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=24.79;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295006    GT:AD:DP:GQ:PL    0/1:1,8:9:14.50:253,0,14
1    223934720    rs17600    G    A    1982.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8313;MQ=58.49;MQ0=0;QD=33.04;SNPEFF_AMINO_ACID_CHANGE=A116;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_223934699_223934867;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433674    GT:AD:DP:GQ:PL    1/1:0,59:60:99:2016,153,0
1    223935090    rs1222132    G    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434648    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    223946945    rs114318533    C    T    500.03    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.687;DB;DP=45;Dels=0.0;FS=4.199;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.569;QD=11.11;ReadPosRankSum=1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480581    GT:AD:DP:GQ:PL    0/1:26,19:45:99:530,0,823
1    223951841    rs751128    T    C    495.84    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.404;DB;DP=59;Dels=0.0;FS=2.557;HRun=0;HaplotypeScore=3.7036;MQ=58.5;MQ0=0;MQRankSum=-0.146;QD=8.4;ReadPosRankSum=0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295006    GT:AD:DP:GQ:PL    0/1:37,21:59:99:526,0,1149
1    224116379    rs141693109    T    C    108.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.4;MQ0=6;QD=6.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    1/1:6,11:18:15:141,15,0
1    224191284    rs3933009    A    G    600.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.53;MQ0=30;QD=10.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    1/1:0,59:59:60.09:633,60,0
1    224318151    rs3065998    T    TTTG    1282.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=53.5962;IndelType=I;MQ=54.37;MQ0=0;QD=61.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366862    GT:AD:DP:GQ:PL    1/1:0,19:21:63.21:1325,63,0
1    224321984    rs1472167    C    T    1095.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519894    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1129,87,0
1    224345012    rs7543762    G    A    1754.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366862    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1787,132,0
1    224363370    rs6426178    A    T    323.75    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.2064;MQ=45.71;MQ0=0;MQRankSum=-1.798;QD=16.19;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    0/1:6,14:20:99:354,0,180
1    224424442    rs1976788    A    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281701    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    224444901    rs2897055    G    C    1168.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281701    GT:AD:DP:GQ:PL    1/1:0,34:34:90.26:1201,90,0
1    224444982    rs2405063    A    C    150.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281701    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:183,15,0
1    224482216    rs2404783    T    C    258.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281701    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:292,24,0
1    224491264    rs4654018    T    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436927    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    224492381    rs7522125    C    T    2791.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9578;MQ=59.51;MQ0=0;QD=29.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436927    GT:AD:DP:GQ:PL    1/1:0,94:94:99:2825,232,0
1    224492746    rs3754090    C    T    3971.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.44;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=L140;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_224492736_224492868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361463    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3972,295,0
1    224493002    rs7532244    T    C    90.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461466    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    224495852    rs7534447    C    T    2957.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_AMINO_ACID_CHANGE=R152;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_224495693_224495965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281701    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2991,226,0
1    224505570    rs3066969    T    TAA    4270.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.0;HRun=2;HaplotypeScore=201.74;IndelType=I;MQ=59.93;MQ0=1;QD=51.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281701    GT:AD:DP:GQ:PL    1/1:3,78:82:99:4270,235,0
1    224505719    rs4436353    T    G    666.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281701    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:700,54,0
1    224514275    rs4653578    G    A    293.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281701    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
1    224517842    rs2896990    C    T    910.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=58.41;MQ0=0;QD=20.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    1/1:1,43:44:81.19:944,81,0
1    224517907    rs4146965    A    T    558.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:591,45,0
1    224544529    rs7517754    A    G    78.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
1    224619015    rs6660212    A    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
1    224621368    rs2405033    G    C    1541.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.93;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1574,120,0
1    224926997    rs66925151    CTTTTTTTTTTTTTT    C    413.80    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.06;DB;DP=24;FS=5.653;HRun=25;HaplotypeScore=301.1367;IndelType=D;MQ=32.23;MQ0=0;MQRankSum=-0.452;QD=17.24;ReadPosRankSum=1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNIH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481095    GT:AD:DP:GQ:PL    0/1:15,6:24:99:453,0,1459
1    225142971    rs12748878    G    C    104.51    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.9;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413949    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:135,0,28
1    225230608    rs2501107    C    T    3614.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.79;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=C520;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225230537_225230816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3615,271,0
1    225237850    rs2501086    A    C    1691.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=39.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1724,126,0
1    225266966    rs3105559    C    G    1208.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=L762V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225266909_225267250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445597    GT:AD:DP:GQ:PL    1/1:0,35:35:93.26:1241,93,0
1    225267999    .    A    G    136.77    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.511;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=58.55;MQ0=0;MQRankSum=0.551;QD=8.55;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:11,5:16:99:167,0,285
1    225268343    rs3128651    A    G    2891.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=59.72;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=K1010R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225268081_225268450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2925,226,0
1    225268346    rs3128652    G    A    3090.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=36.36;SNPEFF_AMINO_ACID_CHANGE=R1011Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225268081_225268450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    1/1:0,85:85:99:3123,232,0
1    225270409    rs3128655    A    T    2091.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=N1099Y;SNPEFF_CODON_CHANGE=Aac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225270251_225270441;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2125,160,0
1    225273248    rs3128658    G    T    1670.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=M1110I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225273246_225273491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1703,129,0
1    225273633    rs3105565    T    A    412.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328556    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:446,33,0
1    225328430    rs12130576    T    G    95.59    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.859;DB;DP=18;Dels=0.0;FS=10.055;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.099;QD=5.31;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328556    GT:AD:DP:GQ:PL    0/1:13,5:18:99:126,0,443
1    225492545    rs1995482    A    G    123.19    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=11.2;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:6,5:11:99:153,0,215
1    225492845    rs12034925    C    T    99.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=56.85;MQ0=0;MQRankSum=0.194;QD=6.61;ReadPosRankSum=1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:8,6:15:99:129,0,251
1    225506262    rs4653418    G    A    545.49    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.711;DB;DP=33;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.126;QD=16.53;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:16,17:33:99:575,0,522
1    225510641    rs1532771    T    C    199.48    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.453;QD=11.08;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:11,7:18:99:229,0,391
1    225512402    rs75859387    GT    G    378.37    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.945;DB;DP=34;FS=10.813;HRun=5;HaplotypeScore=86.7854;IndelType=D;MQ=59.32;MQ0=0;MQRankSum=0.573;QD=11.13;ReadPosRankSum=2.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:19,15:34:99:417,0,557
1    225526103    rs12408441    C    T    79.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:109,0,68
1    225533684    rs6667999    A    G    129.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=15;Dels=0.0;FS=19.59;HRun=0;HaplotypeScore=1.8305;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=8.61;ReadPosRankSum=-0.295;SNPEFF_AMINO_ACID_CHANGE=K2671E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225533664_225534082;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445597    GT:AD:DP:GQ:PL    0/1:9,6:15:99:159,0,302
1    225577250    rs16844828    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:81,6,0
1    225577635    rs74877415    T    C    683.81    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.218;DB;DP=71;Dels=0.0;FS=6.501;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-1.717;QD=9.63;ReadPosRankSum=0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:43,28:71:99:714,0,1329
1    225577648    rs12134158    C    T    1026.56    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.852;DB;DP=58;Dels=0.0;FS=14.215;HRun=0;HaplotypeScore=0.8941;MQ=59.6;MQ0=0;MQRankSum=1.415;QD=17.7;ReadPosRankSum=1.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430092    GT:AD:DP:GQ:PL    0/1:26,32:58:99:1057,0,759
1    225580093    rs61738690    G    C    1568.34    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.625;DB;DP=131;Dels=0.0;FS=1.41;HRun=0;HaplotypeScore=0.5784;MQ=59.86;MQ0=0;MQRankSum=-0.096;QD=11.97;ReadPosRankSum=-0.152;SNPEFF_AMINO_ACID_CHANGE=K3367N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225579993_225580153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445597    GT:AD:DP:GQ:PL    0/1:72,59:131:99:1598,0,2300
1    225597846    rs1011319    A    G    281.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272163    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:314,27,0
1    225600169    rs112582692    C    T    646.73    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=54;Dels=0.0;FS=7.954;HRun=0;HaplotypeScore=1.9996;MQ=59.14;MQ0=0;MQRankSum=-0.205;QD=11.98;ReadPosRankSum=0.134;SNPEFF_AMINO_ACID_CHANGE=S357;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225600156_225600347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272163    GT:AD:DP:GQ:PL    0/1:28,25:54:99:677,0,841
1    225600383    rs16844850    A    G    113.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=18;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.9665;MQ=56.04;MQ0=0;MQRankSum=-1.03;QD=6.32;ReadPosRankSum=-2.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487054    GT:AD:DP:GQ:PL    0/1:12,6:18:99:144,0,325
1    225601647    rs3766928    C    T    1176.95    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.021;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.004;QD=13.37;ReadPosRankSum=1.065;SNPEFF_AMINO_ACID_CHANGE=D24;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225600404_225602040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092811.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366845    GT:AD:DP:GQ:PL    0/1:50,38:88:99:1207,0,1578
1    225603103    rs6702433    C    T    254.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092811.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366845    GT:AD:DP:GQ:PL    1/1:0,12:12:21.07:287,21,0
1    225603166    rs12089582    T    G    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092811.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366845    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
1    225605615    rs12085130    T    C    114.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=7.64;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092811.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366845    GT:AD:DP:GQ:PL    0/1:10,5:15:99:145,0,366
1    225607144    rs2230419    C    T    1320.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_AMINO_ACID_CHANGE=S154N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225606965_225607154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272163    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1354,99,0
1    225607578    rs79557502    T    C    615.73    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.119;QD=12.83;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421383    GT:AD:DP:GQ:PL    0/1:28,20:48:99:646,0,1035
1    225609884    rs1056608    A    G    685.99    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.392;DB;DP=61;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=58.08;MQ0=0;MQRankSum=-1.478;QD=11.25;ReadPosRankSum=-0.743;SNPEFF_AMINO_ACID_CHANGE=P87;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225609779_225609979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272163    GT:AD:DP:GQ:PL    0/1:31,29:61:99:716,0,1008
1    225611661    rs1056607    C    T    8467.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.1225;MQ=59.91;MQ0=0;MQRankSum=0.489;QD=33.87;ReadPosRankSum=-1.117;SNPEFF_AMINO_ACID_CHANGE=V39;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225611613_225611791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272163    GT:AD:DP:GQ:PL    1/1:1,249:250:99:8468,604,0
1    225611845    rs1340867    C    T    2059.56    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=7.806;DB;DP=107;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.507;QD=19.25;ReadPosRankSum=-1.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272163    GT:AD:DP:GQ:PL    0/1:46,61:107:99:2090,0,1250
1    225685473    rs17501138    T    C    499.05    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.507;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.042;QD=12.48;ReadPosRankSum=-1.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    0/1:22,18:40:99:529,0,643
1    225688574    rs147494157    A    AT    320.70    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=15;FS=0.0;HRun=1;HaplotypeScore=65.1794;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=-0.412;QD=21.38;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:7,8:15:99:360,0,189
1    225688591    rs77819119    G    A    376.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.047;QD=20.94;ReadPosRankSum=-0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:6,12:18:99:407,0,169
1    225699680    rs75186578    C    T    191.25    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.386;QD=19.13;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:3,7:10:85.48:221,0,85
1    225699734    rs74392857    T    C    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
1    225700197    rs79382583    A    G    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,72
1    225702144    rs78897252    C    T    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391874    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
1    225706943    rs1340868    C    T    1975.53    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.001;DB;DP=185;Dels=0.0;FS=5.363;HRun=0;HaplotypeScore=4.2814;MQ=54.94;MQ0=0;MQRankSum=-0.674;QD=10.68;ReadPosRankSum=-0.623;SNPEFF_AMINO_ACID_CHANGE=R252;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_225706900_225707267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538194    GT:AD:DP:GQ:PL    0/1:102,83:185:99:2006,0,2965
1    225707271    rs34432111    G    GA    190.77    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=1.048;DB;DP=53;FS=1.463;HRun=16;HaplotypeScore=453.5245;IndelType=I;MQ=52.11;MQ0=0;MQRankSum=-0.076;QD=3.6;ReadPosRankSum=-1.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:34,7:53:99:230,0,134
1    225742588    rs17561228    A    G    521.78    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.085;DB;DP=39;Dels=0.0;FS=6.069;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.69;QD=13.38;ReadPosRankSum=-0.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:18,21:39:99:552,0,621
1    225755148    rs1876085    G    A    442.21    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.26;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.3;MQ0=0;MQRankSum=-0.522;QD=13.4;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:17,16:33:99:472,0,496
1    225755208    rs1876086    G    A    70.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284563    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,148
1    226019346    rs146555972    G    A    97.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.421;QD=12.14;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,129
1    226019371    rs3817268    G    T    93.39    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.0;QD=9.34;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,208
1    226019633    rs1051740    T    C    730.64    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.07;DB;DP=49;Dels=0.0;FS=1.191;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.47;QD=14.91;ReadPosRankSum=0.17;SNPEFF_AMINO_ACID_CHANGE=Y113H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226019480_226019660;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    0/1:24,25:49:99:761,0,708
1    226019653    rs2292566    G    A    610.97    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.654;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.742;QD=13.28;ReadPosRankSum=-0.022;SNPEFF_AMINO_ACID_CHANGE=K119;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226019480_226019660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    0/1:25,21:46:99:641,0,731
1    226019774    rs2260863    G    C    236.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:269,21,0
1    226026241    rs4149223    C    G    101.47    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=5.34;ReadPosRankSum=-0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    0/1:13,6:19:99:131,0,481
1    226026406    rs2234922    A    G    1211.93    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.721;DB;DP=82;Dels=0.0;FS=2.943;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.506;QD=14.78;ReadPosRankSum=1.008;SNPEFF_AMINO_ACID_CHANGE=H139R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226026355_226026582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    0/1:38,44:82:99:1242,0,1134
1    226032229    rs1051741    C    T    715.03    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.136;DB;DP=43;Dels=0.0;FS=1.263;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.189;QD=16.63;ReadPosRankSum=-0.842;SNPEFF_AMINO_ACID_CHANGE=N357;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226032199_226032324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    0/1:18,25:43:99:745,0,479
1    226036309    rs360063    A    G    601.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272167    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:634,48,0
1    226044489    rs78505240    G    GC    368.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=4;HaplotypeScore=23.647;IndelType=I;MQ=59.35;MQ0=0;QD=30.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474478    GT:AD:DP:GQ:PL    1/1:2,10:12:30.10:411,30,0
1    226044766    rs9919303    G    A    369.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=26.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474478    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:403,30,0
1    226049648    rs360080    A    G    76.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483779    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
1    226054333    rs45492299    G    A    405.68    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.476;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.072;QD=10.4;ReadPosRankSum=-1.083;SNPEFF_AMINO_ACID_CHANGE=L206F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226054274_226054382;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366835    GT:AD:DP:GQ:PL    0/1:24,15:39:99:436,0,675
1    226054656    rs360084    G    A    780.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436966    GT:AD:DP:GQ:PL    1/1:0,22:22:63.16:814,63,0
1    226054681    rs360085    T    A    1008.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436966    GT:AD:DP:GQ:PL    1/1:0,27:27:78.23:1042,78,0
1    226054714    rs2292563    G    A    1573.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436966    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1606,117,0
1    226055595    rs2292564    G    A    1166.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=D169;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226055588_226055730;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366835    GT:AD:DP:GQ:PL    1/1:0,37:38:90.26:1199,90,0
1    226125617    rs3007716    A    G    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEFTY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474493    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
1    226127443    rs74578461    G    C    121    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=16;Dels=0.0;FS=3.256;HRun=3;HaplotypeScore=0.0;MQ=53.88;MQ0=0;MQRankSum=1.27;QD=7.56;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEFTY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366820    GT:AD:DP:GQ:PL    0/1:9,7:16:99:151,0,268
1    226179909    rs1885254    A    G    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272091    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    226180026    rs72757014    C    T    235.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.473;QD=15.73;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272091    GT:AD:DP:GQ:PL    0/1:6,9:15:99:266,0,209
1    226182800    rs4653702    A    G    284.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272091    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:317,24,0
1    226252232    rs2036870    C    T    408.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H3F3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366813    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:441,33,0
1    226253127    rs1511056    T    G    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H3F3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366813    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    226253316    rs1849032    G    T    1435.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9958;MQ=53.12;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H3F3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366813    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1469,111,0
1    226334578    rs1219666    G    A    1500.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366812    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1534,117,0
1    226339764    rs10915949    C    A    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464927    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    226346856    rs113921278    A    G    734.78    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=62;Dels=0.0;FS=2.77;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.124;QD=11.85;ReadPosRankSum=0.809;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366812    GT:AD:DP:GQ:PL    0/1:35,27:62:99:765,0,1177
1    226352498    rs2306120    T    G    1062.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0756;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_AMINO_ACID_CHANGE=E187D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226352490_226352630;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366812    GT:AD:DP:GQ:PL    1/1:0,38:38:87.27:1096,87,0
1    226353521    rs2306121    T    A    340.76    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.707;DB;DP=37;Dels=0.0;FS=2.643;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=9.21;ReadPosRankSum=0.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366812    GT:AD:DP:GQ:PL    0/1:23,14:37:99:371,0,806
1    226411317    rs10915962    C    T    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432338    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
1    226420722    rs2306119    A    G    261.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.022;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.416;QD=10.45;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328205    GT:AD:DP:GQ:PL    0/1:15,10:25:99:291,0,547
1    226438449    rs6678137    T    C    417.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366807    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:451,36,0
1    226474132    rs10799347    G    A    2810.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=F107;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226474034_226474159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366801    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2844,214,0
1    226485327    rs11390947    A    AT    591.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=6;HaplotypeScore=39.4094;IndelType=I;MQ=61.13;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328205    GT:AD:DP:GQ:PL    1/1:1,18:19:51.16:633,51,0
1    226488826    rs11577454    A    G    488.81    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.895;DB;DP=46;Dels=0.0;FS=1.33;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.0;QD=10.63;ReadPosRankSum=0.885;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328205    GT:AD:DP:GQ:PL    0/1:27,19:46:99:519,0,725
1    226549498    rs2271347    G    A    68.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498787    GT:AD:DP:GQ:PL    0/1:3,3:6:96.32:98,0,96
1    226550924    rs747657    G    C    1077.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;QD=37.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498787    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1110,81,0
1    226551460    rs752309    T    C    150.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498787    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
1    226551529    rs752307    C    G    623.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498787    GT:AD:DP:GQ:PL    1/1:0,19:19:51.13:656,51,0
1    226556094    rs1805400    T    C    478.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=28.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366794    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:512,39,0
1    226557878    rs3219110    T    C    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366794    GT:AD:DP:GQ:PL    0/1:2,2:4:57.87:71,0,58
1    226561761    rs2377312    G    C    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366794    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    226564691    rs3219090    T    C    605.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366794    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:638,48,0
1    226566726    rs907190    A    C    1660.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366794    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1694,123,0
1    226570840    rs1805415    T    C    4119.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=30.74;SNPEFF_AMINO_ACID_CHANGE=K352;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226570737_226570884;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366794    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4119,328,0
1    226578099    rs1805403    T    C    693.72    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=58;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=1.5317;MQ=59.6;MQ0=0;MQRankSum=-0.104;QD=11.96;ReadPosRankSum=1.802;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366791    GT:AD:DP:GQ:PL    0/1:32,26:58:99:724,0,843
1    226836190    rs4653762    C    A    211.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272117    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
1    226836590    rs2298169    A    G    330.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272117    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:363,27,0
1    226923146    rs11337528    GT    G    293.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.307;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=47.153;IndelType=D;MQ=59.39;MQ0=0;MQRankSum=0.204;QD=14.67;ReadPosRankSum=0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272117    GT:AD:DP:GQ:PL    0/1:10,10:20:99:333,0,348
1    226923264    rs708775    G    A    705.63    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=1.361;DB;DP=64;Dels=0.0;FS=0.973;HRun=2;HaplotypeScore=2.5873;MQ=59.35;MQ0=0;MQRankSum=-0.649;QD=11.03;ReadPosRankSum=-0.272;SNPEFF_AMINO_ACID_CHANGE=A632;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226923228_226925159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272117    GT:AD:DP:GQ:PL    0/1:37,27:64:99:736,0,1112
1    226923505    rs708776    G    T    618.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=P552Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226923228_226925159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272117    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:652,48,0
1    226923938    rs6667260    A    C    333.86    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=34;Dels=0.0;FS=1.434;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=0.313;QD=9.82;ReadPosRankSum=0.608;SNPEFF_AMINO_ACID_CHANGE=S408A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_226923228_226925159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272117    GT:AD:DP:GQ:PL    0/1:20,14:34:99:364,0,615
1    227068242    .    GGACA    G    631.89    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=2.342;DP=38;FS=0.0;HRun=0;HaplotypeScore=232.862;IndelType=D;MQ=58.51;MQ0=0;MQRankSum=-0.064;QD=16.63;ReadPosRankSum=-2.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521431    GT:AD:DP:GQ:PL    0/1:26,12:38:99:671,0,1545
1    227069677    rs11405    T    C    1495.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.25;MQ0=0;QD=26.71;SNPEFF_AMINO_ACID_CHANGE=A23;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227069589_227069749;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340188    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1529,126,0
1    227069737    rs6759    C    T    341.89    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.364;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-1.189;QD=12.66;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=N43;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227069589_227069749;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340188    GT:AD:DP:GQ:PL    0/1:14,13:27:99:372,0,480
1    227071364    rs1295643    G    A    69.58    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.7;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524196    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,142
1    227071377    rs1295644    T    C    378.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524196    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:411,30,0
1    227071525    rs1046240    C    T    825.94    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.53;DB;DP=70;Dels=0.0;FS=4.715;HRun=0;HaplotypeScore=1.7262;MQ=57.66;MQ0=0;MQRankSum=2.13;QD=11.8;ReadPosRankSum=0.047;SNPEFF_AMINO_ACID_CHANGE=H120;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227071406_227071620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366782    GT:AD:DP:GQ:PL    0/1:37,33:70:99:856,0,977
1    227073410    rs2236910    G    C    219.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495488    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:253,18,0
1    227075920    rs149734051    A    G    308.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=17.13;ReadPosRankSum=-1.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495488    GT:AD:DP:GQ:PL    0/1:8,10:18:99:338,0,255
1    227078875    rs114076393    G    A    113.63    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.23;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340188    GT:AD:DP:GQ:PL    0/1:2,5:7:56.51:144,0,57
1    227078955    rs2802267    T    C    354.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340188    GT:AD:DP:GQ:PL    1/1:0,12:12:30.07:387,30,0
1    227081622    rs10753428    A    G    403.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=28.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460775    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:436,36,0
1    227081850    rs2855562    G    A    234.42    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.939;QD=11.16;ReadPosRankSum=-0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460775    GT:AD:DP:GQ:PL    0/1:11,10:21:99:264,0,281
1    227085155    rs11802358    G    A    718.33    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.258;DB;DP=66;Dels=0.0;FS=4.891;HRun=2;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;MQRankSum=0.233;QD=10.88;ReadPosRankSum=-0.832;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340188    GT:AD:DP:GQ:PL    0/1:39,27:66:99:748,0,1174
1    227085462    rs1800672    T    C    2003.24    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.653;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7297;MQ=59.35;MQ0=0;MQRankSum=-0.973;QD=13.35;ReadPosRankSum=0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340188    GT:AD:DP:GQ:PL    0/1:77,73:150:99:2033,0,2206
1    227085646    rs1800673    C    T    441.73    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.375;QD=20.08;ReadPosRankSum=-0.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340188    GT:AD:DP:GQ:PL    0/1:8,14:22:99:472,0,261
1    227149203    rs11549708    G    A    217.53    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=0.871;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.226;QD=8.7;ReadPosRankSum=-0.549;SNPEFF_AMINO_ACID_CHANGE=A2;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227149127_227149263;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405743    GT:AD:DP:GQ:PL    0/1:17,8:25:99:248,0,480
1    227170298    rs2297412    A    G    118.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.005;DB;DP=15;Dels=0.0;FS=4.472;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=7.93;ReadPosRankSum=-1.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366775    GT:AD:DP:GQ:PL    0/1:9,6:15:99:149,0,313
1    227170768    rs2256060    T    C    112.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366775    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:145,12,0
1    227171958    rs7530213    G    C    296.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366775    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:330,24,0
1    227172290    rs12593    C    T    1090.43    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.649;DB;DP=69;Dels=0.0;FS=3.396;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.775;QD=15.8;ReadPosRankSum=-1.406;SNPEFF_AMINO_ACID_CHANGE=F154;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227172249_227172356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433743    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1120,0,902
1    227172518    rs1317490    C    T    270.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.795;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.088;QD=15.01;ReadPosRankSum=-2.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366775    GT:AD:DP:GQ:PL    0/1:9,9:18:99:300,0,270
1    227172903    rs2297415    G    A    594.79    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.916;DB;DP=57;Dels=0.0;FS=1.301;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.06;QD=10.43;ReadPosRankSum=-0.435;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:33,24:57:99:625,0,882
1    227172935    rs2297416    C    G    682.23    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.515;DB;DP=79;Dels=0.0;FS=0.951;HRun=0;HaplotypeScore=4.5466;MQ=59.42;MQ0=0;MQRankSum=-1.173;QD=8.64;ReadPosRankSum=-0.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:46,33:79:99:712,0,1356
1    227173892    rs17592479    T    A    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
1    227174122    rs41303131    C    G    810.03    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=47;Dels=0.0;FS=11.76;HRun=1;HaplotypeScore=7.4993;MQ=59.51;MQ0=0;MQRankSum=0.605;QD=17.23;ReadPosRankSum=-0.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:16,30:47:99:840,0,392
1    227174145    rs7552783    T    C    924.51    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=64;Dels=0.0;FS=12.113;HRun=1;HaplotypeScore=2.2282;MQ=59.28;MQ0=0;MQRankSum=0.114;QD=14.45;ReadPosRankSum=1.836;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:30,34:64:99:955,0,941
1    227174210    rs3738725    T    C    759.19    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.478;DB;DP=76;Dels=0.0;FS=0.924;HRun=1;HaplotypeScore=0.5784;MQ=59.39;MQ0=0;MQRankSum=-0.336;QD=9.99;ReadPosRankSum=-1.745;SNPEFF_AMINO_ACID_CHANGE=S246;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227174154_227174469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433743    GT:AD:DP:GQ:PL    0/1:42,34:76:99:789,0,1302
1    227182033    rs2802269    G    A    201.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.17;SNPEFF_AMINO_ACID_CHANGE=A1618V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227177566_227182100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366767    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:234,18,0
1    227182575    rs1045247    A    G    2709.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=31.88;SNPEFF_AMINO_ACID_CHANGE=S1578;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227182524_227182681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366767    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2743,214,0
1    227192579    rs2297418    A    C    507.87    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.598;DB;DP=53;Dels=0.0;FS=5.579;HRun=2;HaplotypeScore=1.8245;MQ=59.21;MQ0=0;MQRankSum=-0.354;QD=9.58;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:30,23:53:99:538,0,917
1    227198434    rs139117933    AGAG    A    268.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=54.321;IndelType=D;MQ=57.43;MQ0=0;MQRankSum=0.201;QD=19.2;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:7,7:14:99:308,0,434
1    227198775    rs12403978    C    G    671.36    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.808;DB;DP=51;Dels=0.0;FS=8.054;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=-1.493;QD=13.16;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:29,22:51:99:701,0,917
1    227198868    rs12404219    C    G    291.43    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.747;QD=13.88;ReadPosRankSum=1.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:11,10:21:99:321,0,392
1    227210888    rs11578479    A    T    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    227213968    rs7535826    G    T    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:71,0,33
1    227216662    rs1929861    T    C    809.43    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=66;Dels=0.0;FS=3.385;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-1.332;QD=12.26;ReadPosRankSum=-0.413;SNPEFF_AMINO_ACID_CHANGE=K1260;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227216358_227216951;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366767    GT:AD:DP:GQ:PL    0/1:34,32:66:99:839,0,1067
1    227218069    rs5781458    C    CAT    1239.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=74.7474;IndelType=I;MQ=53.6;MQ0=0;QD=53.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,23:23:63.22:1281,63,0
1    227218085    rs72332317    CA    C    191.16    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=35;FS=0.0;HRun=11;HaplotypeScore=203.2524;IndelType=D;MQ=54.11;MQ0=0;MQRankSum=-2.218;QD=5.46;ReadPosRankSum=-0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:21,14:35:99:230,0,454
1    227219314    rs1319103    A    G    222.87    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=18.57;ReadPosRankSum=1.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:5,7:12:99:253,0,167
1    227222194    rs41303115    T    G    65.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:95,0,30
1    227222515    rs113874316    G    GACAA    3434.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=158.3978;IndelType=I;MQ=56.2;MQ0=0;QD=64.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:8,45:53:99:3435,135,0
1    227239739    rs55865118    T    A    788.90    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=59.66;MQ0=0;MQRankSum=-0.598;QD=14.34;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:28,27:55:99:819,0,963
1    227239746    rs10799381    G    T    1823.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.45;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.62;MQ0=0;MQRankSum=1.662;QD=37.22;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:1,48:49:99:1857,101,0
1    227247016    rs10495266    G    C    135.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.545;QD=9.05;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:9,6:15:99:166,0,257
1    227259884    rs10495263    G    A    867.14    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.237;DB;DP=67;Dels=0.0;FS=7.038;HRun=1;HaplotypeScore=0.9665;MQ=59.66;MQ0=0;MQRankSum=1.071;QD=12.94;ReadPosRankSum=-0.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:34,33:67:99:897,0,1158
1    227261403    rs10495260    T    C    61.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.683;QD=6.81;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:6,3:9:91.26:91,0,220
1    227268488    rs1929853    T    G    371.54    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.457;QD=24.77;ReadPosRankSum=-0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:4,11:15:99:402,0,124
1    227268836    rs12047828    T    C    257.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.627;QD=18.43;ReadPosRankSum=0.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:6,8:14:99:288,0,163
1    227288571    rs11806820    C    T    153.05    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:183,0,25
1    227288655    rs2104863    G    A    791.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:825,60,0
1    227289078    rs497291    A    G    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:73,0,30
1    227299978    rs2458521    C    T    884.25    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.538;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=17.34;ReadPosRankSum=0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:24,27:51:99:914,0,853
1    227300277    rs488104    G    A    810.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:843,66,0
1    227330488    rs10916094    G    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    227330759    rs12139502    A    G    281.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:314,24,0
1    227333055    rs6675599    A    G    640    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:673,57,0
1    227333141    rs60079575    T    C    1062.20    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=3.498;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=17.7;ReadPosRankSum=1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1092,0,761
1    227335329    rs6685954    T    C    34.94    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=4.37;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:5,3:8:64.93:65,0,149
1    227348126    rs11800062    T    C    351.85    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=15.3;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:12,11:23:99:382,0,422
1    227348349    rs3754419    A    C    797.25    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.94;DB;DP=68;Dels=0.0;FS=4.805;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=11.72;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:40,28:68:99:827,0,1174
1    227381326    rs6696485    C    T    225.27    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.546;QD=22.53;ReadPosRankSum=-0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478573    GT:AD:DP:GQ:PL    0/1:3,7:10:96.12:255,0,96
1    227381373    rs3768436    G    T    241.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.133;QD=13.39;ReadPosRankSum=1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:8,10:18:99:271,0,269
1    227381674    rs35780410    TA    T    329.42    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=2.963;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=49.3228;IndelType=D;MQ=59.63;MQ0=0;MQRankSum=1.595;QD=15.69;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:10,11:21:99:368,0,345
1    227387143    rs3768435    A    G    108.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    0/1:2,4:6:62.59:138,0,63
1    227387361    rs3768434    A    G    825.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:859,63,0
1    227400792    rs1513612    A    T    419.71    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.211;DB;DP=31;Dels=0.0;FS=6.34;HRun=0;HaplotypeScore=0.7887;MQ=59.4;MQ0=0;MQRankSum=0.337;QD=13.54;ReadPosRankSum=2.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462553    GT:AD:DP:GQ:PL    0/1:17,14:31:99:450,0,539
1    227504613    rs4653822    G    C    306.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334218    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:340,24,0
1    227505088    rs12128753    A    C    94.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366767    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
1    227681280    .    A    C    40.25    MQFilter40;QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.89;MQ0=20;MQRankSum=1.302;QD=1.09;ReadPosRankSum=-1.302;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-275O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430210    GT:AD:DP:GQ:PL    0/1:29,8:37:70.24:70,0,190
1    227681289    .    G    A    67.67    MQFilter40;QDFilter2    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.23;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.6033;MQ=15.97;MQ0=24;MQRankSum=1.309;QD=1.54;ReadPosRankSum=-1.135;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-275O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430210    GT:AD:DP:GQ:PL    0/1:32,12:44:97.66:98,0,209
1    227681293    rs139795698    T    G    195.57    MQFilter40    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.5;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.6033;MQ=16.56;MQ0=23;MQRankSum=1.936;QD=4.44;ReadPosRankSum=-1.232;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-275O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430210    GT:AD:DP:GQ:PL    0/1:18,26:44:99:226,0,114
1    227681315    .    A    C    317.22    MQFilter40    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=17.53;MQ0=30;MQRankSum=2.266;QD=5.29;ReadPosRankSum=0.104;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-275O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430210    GT:AD:DP:GQ:PL    0/1:26,34:60:99:347,0,162
1    227681379    .    C    T    385.90    MQFilter40    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.016;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.49;MQ0=40;MQRankSum=0.877;QD=3.3;ReadPosRankSum=-0.633;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-275O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430210    GT:AD:DP:GQ:PL    0/1:88,29:117:99:416,0,1415
1    227681475    rs4653844    T    C    2985.60    MQFilter40    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.523;DB;DP=208;Dels=0.0;FS=8.542;HRun=0;HaplotypeScore=3.8091;MQ=39.08;MQ0=6;MQRankSum=-1.575;QD=14.35;ReadPosRankSum=-3.471;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA_pseudogene;SNPEFF_GENE_NAME=AL451054.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475907    GT:AD:DP:GQ:PL    0/1:79,129:208:99:3016,0,1934
1    227681581    rs76425427    G    A    716.07    SnpCluster    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=5.83;DB;DP=161;Dels=0.0;FS=7.355;HRun=0;HaplotypeScore=11.0788;MQ=43.13;MQ0=3;MQRankSum=-1.796;QD=4.45;ReadPosRankSum=-0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA_pseudogene;SNPEFF_GENE_NAME=AL451054.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475907    GT:AD:DP:GQ:PL    0/1:109,52:161:99:746,0,3118
1    227681585    rs74748450    C    T    473.40    SnpCluster    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=1.593;DB;DP=157;Dels=0.0;FS=10.593;HRun=0;HaplotypeScore=12.6505;MQ=42.53;MQ0=3;MQRankSum=-2.172;QD=3.02;ReadPosRankSum=0.255;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA_pseudogene;SNPEFF_GENE_NAME=AL451054.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475907    GT:AD:DP:GQ:PL    0/1:106,51:157:99:503,0,3093
1    227681586    rs75421617    C    T    244.67    QDFilter2;SnpCluster    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.587;DB;DP=160;Dels=0.0;FS=8.122;HRun=0;HaplotypeScore=12.6505;MQ=42.35;MQ0=3;MQRankSum=-1.603;QD=1.53;ReadPosRankSum=1.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA_pseudogene;SNPEFF_GENE_NAME=AL451054.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475907    GT:AD:DP:GQ:PL    0/1:124,36:160:99:275,0,3361
1    227695408    .    T    G    100.64    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4875;MQ=11.78;MQ0=33;QD=1.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-275O4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422837    GT:AD:DP:GQ:PL    1/1:12,50:62:15:133,15,0
1    227695430    .    A    C    48    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=10.11;MQ0=33;QD=0.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-275O4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422837    GT:AD:DP:GQ:PL    1/1:12,40:52:9:80,9,0
1    227785906    rs2999743    A    G    74.93    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.73;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF678;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343776    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:105,0,30
1    227786033    rs2935146    G    A    522.83    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.441;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8675;MQ=46.47;MQ0=0;MQRankSum=-3.969;QD=11.37;ReadPosRankSum=-1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF678;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343776    GT:AD:DP:GQ:PL    0/1:22,24:46:99:553,0,671
1    227786202    rs79329405    GT    G    129.65    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.702;DB;DP=28;FS=0.0;HRun=8;HaplotypeScore=73.9878;IndelType=D;MQ=54.15;MQ0=0;MQRankSum=-0.109;QD=4.63;ReadPosRankSum=0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF678;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343776    GT:AD:DP:GQ:PL    0/1:18,10:28:99:169,0,405
1    227834233    rs112327170    TC    T    908.75    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=5.093;DB;DP=83;FS=3.628;HRun=9;HaplotypeScore=225.9956;IndelType=D;MQ=59.63;MQ0=0;MQRankSum=1.646;QD=10.95;ReadPosRankSum=-0.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF678;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343776    GT:AD:DP:GQ:PL    0/1:40,43:83:99:948,0,943
1    227834400    rs6426468    G    A    1297.42    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=124;Dels=0.0;FS=0.757;HRun=0;HaplotypeScore=1.864;MQ=59.4;MQ0=0;MQRankSum=0.093;QD=10.46;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF678;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343776    GT:AD:DP:GQ:PL    0/1:70,53:124:99:1327,0,2199
1    227886623    rs6426475    T    A    38.87    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=5.55;ReadPosRankSum=1.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF847P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412638    GT:AD:DP:GQ:PL    0/1:3,4:7:68.86:69,0,102
1    227893644    rs35950778    T    TA    67.88    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DB;DP=36;FS=0.0;HRun=22;HaplotypeScore=268.4302;IndelType=I;MQ=47.68;MQ0=0;MQRankSum=1.354;QD=1.89;ReadPosRankSum=1.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF847P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400949    GT:AD:DP:GQ:PL    0/1:20,8:36:77.84:107,0,78
1    227894245    rs34260118    T    C    938.91    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.451;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.536;QD=17.07;ReadPosRankSum=0.552;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF847P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400949    GT:AD:DP:GQ:PL    0/1:24,31:55:99:969,0,770
1    227920061    rs1060295    T    G    215.19    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.373;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9363;MQ=58.45;MQ0=0;MQRankSum=0.12;QD=7.17;ReadPosRankSum=0.743;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JMJD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465251    GT:AD:DP:GQ:PL    0/1:18,11:30:99:245,0,548
1    227921796    rs11804020    C    T    93.84    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.237;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=7.22;ReadPosRankSum=-2.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JMJD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366758    GT:AD:DP:GQ:PL    0/1:9,4:13:99:124,0,288
1    227923081    rs7419238    G    A    277.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_AMINO_ACID_CHANGE=A11V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227922713_227923112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JMJD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366758    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:310,24,0
1    227935280    rs2236361    C    T    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.7;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNAP47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315781    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,111
1    227935355    rs2236360    T    C    284.04    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=21;Dels=0.0;FS=8.28;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.106;QD=13.53;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNAP47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315781    GT:AD:DP:GQ:PL    0/1:11,10:21:99:314,0,289
1    227935444    rs2236359    A    G    519.29    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.296;DB;DP=31;Dels=0.0;FS=6.429;HRun=3;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.306;QD=16.75;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=R48G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_227935393_227935934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNAP47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315781    GT:AD:DP:GQ:PL    0/1:10,21:31:99:549,0,258
1    227968033    rs9786978    T    C    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNAP47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315781    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:74,0,31
1    228003967    rs12121588    G    A    358.54    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.645;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.599;QD=12.36;ReadPosRankSum=0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366757    GT:AD:DP:GQ:PL    0/1:15,13:29:99:389,0,414
1    228033197    rs9426581    A    G    378.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_AMINO_ACID_CHANGE=M204V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228033171_228033313;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366757    GT:AD:DP:GQ:PL    1/1:0,13:13:33.07:411,33,0
1    228109137    rs35718701    A    G    169.91    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.66;QD=13.07;ReadPosRankSum=-1.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497852    GT:AD:DP:GQ:PL    0/1:7,6:13:99:200,0,219
1    228112121    rs4653889    A    G    457.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;QD=30.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272164    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:491,36,0
1    228113046    rs8192629    C    T    125.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.06;SNPEFF_AMINO_ACID_CHANGE=A90;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228112964_228113220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272164    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
1    228113163    rs3795768    A    G    181.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_AMINO_ACID_CHANGE=A51;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228112964_228113220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272164    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:214,18,0
1    228159869    rs72472998    G    A    388.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=21;Dels=0.0;FS=4.612;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.902;QD=18.52;ReadPosRankSum=-0.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:7,14:21:99:419,0,183
1    228159899    rs150943892    G    A    260    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.8667;MQ=56.82;MQ0=0;MQRankSum=0.382;QD=21.67;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:4,8:12:90.36:290,0,90
1    228159904    rs139802884    C    T    296.34    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=1.611;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.87;MQ0=0;MQRankSum=-0.752;QD=21.17;ReadPosRankSum=0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:3,10:14:36.46:326,0,36
1    228159944    rs75748115    T    C    149.76    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.34;MQ0=0;MQRankSum=0.0;QD=13.61;ReadPosRankSum=0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:3,8:11:58.36:180,0,58
1    228160112    rs143520683    C    T    101.60    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.47;MQ0=1;MQRankSum=-1.951;QD=9.24;ReadPosRankSum=-1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:5,6:11:99:132,0,122
1    228160147    rs146761735    C    T    133.90    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=5.332;HRun=1;HaplotypeScore=0.0;MQ=41.76;MQ0=0;MQRankSum=-2.68;QD=10.3;ReadPosRankSum=0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:5,8:13:99:164,0,169
1    228160173    rs11584326    G    A    107.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=15;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=0.734;MQ=40.42;MQ0=1;MQRankSum=2.524;QD=7.18;ReadPosRankSum=0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:10,5:15:99:138,0,203
1    228160986    rs114277923    A    T    300.80    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=14;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=53.52;MQ0=0;MQRankSum=0.212;QD=21.49;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:4,10:14:99:331,0,108
1    228161029    rs74744412    A    G    190.12    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=53.67;MQ0=0;MQRankSum=-1.386;QD=19.01;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:3,7:10:92.88:220,0,93
1    228161096    rs72472999    G    A    202.29    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.8321;MQ=55.38;MQ0=0;MQRankSum=-0.529;QD=16.86;ReadPosRankSum=1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:5,7:12:99:232,0,170
1    228161121    rs114562737    T    G    128.98    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=13;Dels=0.0;FS=2.533;HRun=0;HaplotypeScore=0.0;MQ=54.35;MQ0=0;MQRankSum=0.135;QD=9.92;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:8,5:13:99:159,0,242
1    228161165    rs192389758    G    A    50.30    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=49.93;MQ0=1;MQRankSum=-1.268;QD=2.96;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:12,4:17:80.29:80,0,275
1    228161183    rs183650490    C    T    50.88    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=14;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.734;MQ=48.02;MQ0=1;MQRankSum=-0.978;QD=3.63;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:10,3:14:80.87:81,0,286
1    228161376    rs191759517    C    T    211.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.06;MQ0=1;MQRankSum=-0.566;QD=17.61;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:4,8:12:81.24:241,0,81
1    228161413    rs621372    T    C    284.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.43;MQ0=1;QD=25.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    1/1:0,11:11:27.05:317,27,0
1    228161511    rs79139383    G    A    311.18    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=54.78;MQ0=0;MQRankSum=0.537;QD=25.93;ReadPosRankSum=-2.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:2,10:12:46.52:341,0,47
1    228161798    rs76181126    G    A    133.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=12;Dels=0.0;FS=13.222;HRun=0;HaplotypeScore=0.0;MQ=49.24;MQ0=0;MQRankSum=-0.387;QD=11.11;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:6,6:12:99:163,0,133
1    228161820    rs143192911    G    A    73.43    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=13;Dels=0.0;FS=12.175;HRun=0;HaplotypeScore=1.6918;MQ=51.83;MQ0=0;MQRankSum=0.689;QD=5.65;ReadPosRankSum=1.977;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:8,5:13:99:103,0,157
1    228161852    rs77517495    G    C    33.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7044;MQ=54.56;MQ0=0;MQRankSum=0.729;QD=3.74;ReadPosRankSum=-1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-192I3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425003    GT:AD:DP:GQ:PL    0/1:5,4:9:63.69:64,0,135
1    228210179    rs3094911    A    G    123.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284523    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
1    228284991    rs2070960    C    T    472.55    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=33;Dels=0.0;FS=8.506;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=2.792;QD=14.32;ReadPosRankSum=-2.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473546    GT:AD:DP:GQ:PL    0/1:16,17:33:99:503,0,503
1    228285579    rs143463838    C    T    302.70    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.926;DB;DP=30;Dels=0.0;FS=9.037;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=10.09;ReadPosRankSum=1.129;SNPEFF_AMINO_ACID_CHANGE=A128;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228285553_228286910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542941    GT:AD:DP:GQ:PL    0/1:17,13:30:99:333,0,535
1    228327999    rs4653908    C    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366730    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
1    228333652    rs11577976    G    A    237.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.835;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.491;QD=11.88;ReadPosRankSum=-0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469973    GT:AD:DP:GQ:PL    0/1:10,10:20:99:268,0,299
1    228335125    rs1803695    C    T    651.74    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=41;Dels=0.0;FS=2.82;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=-0.51;QD=15.9;ReadPosRankSum=-0.458;SNPEFF_AMINO_ACID_CHANGE=A111;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228335107_228335245;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366723    GT:AD:DP:GQ:PL    0/1:19,22:41:99:682,0,549
1    228335959    rs11580599    C    T    46.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.74;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=P188L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228335935_228335989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366723    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:77,0,32
1    228352160    rs4348717    T    C    46.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366714    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:78,6,0
1    228391591    rs12022917    G    C    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337335    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
1    228399482    rs11804508    C    G    138.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=16;Dels=0.0;FS=8.616;HRun=0;HaplotypeScore=0.9159;MQ=58.55;MQ0=0;MQRankSum=-0.452;QD=8.65;ReadPosRankSum=-1.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295012    GT:AD:DP:GQ:PL    0/1:8,8:16:99:168,0,246
1    228402047    rs1620111    A    G    676.74    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=59;Dels=0.0;FS=1.166;HRun=0;HaplotypeScore=0.0;MQ=58.02;MQ0=0;MQRankSum=-0.151;QD=11.47;ReadPosRankSum=0.975;SNPEFF_AMINO_ACID_CHANGE=L477;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228401875_228402135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:33,26:59:99:707,0,802
1    228402121    rs1771487    A    G    586.75    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.157;DB;DP=60;Dels=0.0;FS=1.104;HRun=1;HaplotypeScore=1.5317;MQ=57.66;MQ0=0;MQRankSum=-0.223;QD=9.78;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=Q502R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228401875_228402135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:36,23:60:99:617,0,1029
1    228402283    rs1771486    C    G    196.58    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=15.12;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:6,7:13:99:227,0,171
1    228402508    rs2776853    C    T    176.93    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.323;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.484;QD=7.69;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=L513;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228402491_228402799;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:15,8:23:99:207,0,478
1    228404198    rs61501937    G    A    217.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=27.15;ReadPosRankSum=-0.747;SNPEFF_AMINO_ACID_CHANGE=A724;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228404122_228404403;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    1/1:1,7:8:18.06:250,18,0
1    228404668    rs3795777    T    C    206.62    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.067;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.794;QD=13.77;ReadPosRankSum=1.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:8,7:15:99:237,0,275
1    228404997    rs115777899    C    T    346.70    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.383;DB;DP=27;Dels=0.0;FS=16.693;HRun=0;HaplotypeScore=0.9916;MQ=59.14;MQ0=0;MQRankSum=0.024;QD=12.84;ReadPosRankSum=-0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:14,13:27:99:377,0,414
1    228405118    rs5781507    G    GA    214.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=19.0753;IndelType=I;MQ=60.0;MQ0=0;QD=21.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    1/1:2,8:10:24.06:256,24,0
1    228412106    rs1771482    T    C    546.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.42;DB;DP=36;Dels=0.0;FS=2.116;HRun=0;HaplotypeScore=0.8321;MQ=59.36;MQ0=0;MQRankSum=0.744;QD=15.17;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:18,18:36:99:576,0,585
1    228412227    rs1771480    T    C    719.73    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.739;DB;DP=83;Dels=0.0;FS=11.272;HRun=0;HaplotypeScore=4.4032;MQ=59.44;MQ0=0;MQRankSum=-1.087;QD=8.67;ReadPosRankSum=1.508;SNPEFF_AMINO_ACID_CHANGE=S907;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228412160_228412435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:45,38:83:99:750,0,932
1    228412228    rs1757153    G    A    732.77    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.169;DB;DP=81;Dels=0.0;FS=10.327;HRun=0;HaplotypeScore=4.4032;MQ=59.43;MQ0=0;MQRankSum=0.633;QD=9.05;ReadPosRankSum=1.925;SNPEFF_AMINO_ACID_CHANGE=A908T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228412160_228412435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:45,35:81:99:763,0,945
1    228412308    rs1757152    G    A    896.93    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=64;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9997;MQ=58.91;MQ0=0;MQRankSum=-1.125;QD=14.01;ReadPosRankSum=1.252;SNPEFF_AMINO_ACID_CHANGE=S934;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228412160_228412435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:36,28:64:99:927,0,1068
1    228430697    rs1771456    A    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:72,0,67
1    228431095    rs1771455    A    G    432.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=38;Dels=0.0;FS=1.356;HRun=1;HaplotypeScore=0.0;MQ=56.25;MQ0=0;MQRankSum=0.555;QD=11.37;ReadPosRankSum=1.022;SNPEFF_AMINO_ACID_CHANGE=T1047;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228430884_228431159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:19,19:38:99:462,0,539
1    228431930    rs10916293    C    T    1014.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.962;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9774;MQ=59.08;MQ0=0;MQRankSum=-1.434;QD=14.28;ReadPosRankSum=0.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:35,35:71:99:1044,0,1156
1    228432987    rs1757129    G    C    286.93    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.854;QD=16.88;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:6,11:17:99:317,0,191
1    228433217    rs2487384    A    G    1145.29    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.556;DB;DP=85;Dels=0.0;FS=1.811;HRun=1;HaplotypeScore=1.367;MQ=59.78;MQ0=0;MQRankSum=0.205;QD=13.47;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=T1195;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228433114_228433389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:41,43:85:99:1175,0,1332
1    228433491    rs1888681    T    C    207.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=11.5;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:10,8:18:99:237,0,336
1    228433556    rs1888680    A    T    32.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.7;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:5,2:7:62.92:63,0,190
1    228434395    rs7517088    T    C    857.93    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=61;Dels=0.0;FS=6.913;HRun=1;HaplotypeScore=1.5782;MQ=53.63;MQ0=0;MQRankSum=0.959;QD=14.06;ReadPosRankSum=0.007;SNPEFF_AMINO_ACID_CHANGE=A1308;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228434229_228434504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:30,31:61:99:888,0,919
1    228434467    rs7517108    T    C    1021.13    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.654;DB;DP=83;Dels=0.0;FS=3.127;HRun=1;HaplotypeScore=0.9998;MQ=57.74;MQ0=0;MQRankSum=0.781;QD=12.3;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=A1332;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228434229_228434504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1051,0,1299
1    228434602    rs1411915    A    T    640.86    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.335;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.581;QD=17.32;ReadPosRankSum=0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:14,23:37:99:671,0,459
1    228437603    rs6426494    T    C    866.78    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=3.226;DB;DP=53;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.6123;MQ=59.56;MQ0=0;MQRankSum=1.007;QD=16.35;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:21,32:53:99:897,0,600
1    228444318    rs7532144    T    G    792.63    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.499;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.55;MQ0=0;MQRankSum=1.28;QD=16.51;ReadPosRankSum=-0.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:18,30:48:99:823,0,553
1    228444565    rs7532342    T    A    1772.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.98;MQ0=0;QD=30.55;SNPEFF_AMINO_ACID_CHANGE=V1508D;SNPEFF_CODON_CHANGE=gTc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228444352_228444627;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1805,153,0
1    228444605    .    C    G    662.32    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.055;DP=50;Dels=0.0;FS=10.413;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.238;QD=13.25;ReadPosRankSum=-1.487;SNPEFF_AMINO_ACID_CHANGE=L1521;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228444352_228444627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:25,24:50:99:692,0,758
1    228444741    rs3795780    C    T    179.34    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=16.3;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:5,6:11:99:209,0,161
1    228447513    rs7525075    T    G    351.56    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.246;DB;DP=26;Dels=0.0;FS=3.203;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.769;QD=13.52;ReadPosRankSum=1.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:14,12:26:99:382,0,369
1    228447519    rs7525078    T    A    301.80    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.677;DB;DP=23;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.248;QD=13.12;ReadPosRankSum=0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:12,11:23:99:332,0,404
1    228456147    rs878388    T    C    404.77    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=3.076;DB;DP=33;Dels=0.0;FS=4.046;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=1.013;QD=12.27;ReadPosRankSum=0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:20,13:33:99:435,0,725
1    228461129    rs1188724    A    G    780.37    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=46;Dels=0.0;FS=4.351;HRun=0;HaplotypeScore=0.8321;MQ=59.5;MQ0=0;MQRankSum=-0.686;QD=16.96;ReadPosRankSum=2.082;SNPEFF_AMINO_ACID_CHANGE=H520R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228460973_228461248;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:18,28:46:99:810,0,490
1    228461408    rs35161421    A    AG    1134.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=3;HaplotypeScore=93.9811;IndelType=I;MQ=58.39;MQ0=0;QD=39.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    1/1:1,28:29:84.28:1177,84,0
1    228461757    rs474735    G    A    69.05    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.322;QD=7.67;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:6,3:9:99:99,0,141
1    228464062    rs11590548    G    A    158.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.663;DB;DP=16;Dels=0.0;FS=8.436;HRun=1;HaplotypeScore=0.6651;MQ=55.52;MQ0=0;MQRankSum=1.027;QD=9.89;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:8,8:16:99:188,0,185
1    228464100    rs936884    G    A    392.10    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=24;Dels=0.0;FS=1.685;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.119;QD=16.34;ReadPosRankSum=-0.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:9,15:24:99:422,0,233
1    228464248    rs1188721    T    G    173.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=53.03;MQ0=0;MQRankSum=0.212;QD=12.43;ReadPosRankSum=1.256;SNPEFF_AMINO_ACID_CHANGE=D2106E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228464151_228464417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:6,8:14:99:204,0,135
1    228464276    rs1188722    T    C    175.31    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=14;Dels=0.0;FS=5.219;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.356;QD=12.52;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=F2116L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228464151_228464417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:8,6:14:99:205,0,209
1    228464842    rs936885    C    G    248.58    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=16.57;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:7,8:15:99:279,0,140
1    228465346    rs493945    A    G    76.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=9.6;ReadPosRankSum=-2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:4,4:8:99:107,0,142
1    228465370    rs867599    T    G    121.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.467;QD=9.37;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:7,6:13:99:152,0,204
1    228466750    rs3795782    T    C    237.27    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.119;DB;DP=19;Dels=0.0;FS=1.957;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.353;QD=12.49;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493813    GT:AD:DP:GQ:PL    0/1:10,9:19:99:267,0,275
1    228466862    rs3820627    C    T    486.14    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.569;DB;DP=40;Dels=0.0;FS=2.78;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=1.11;QD=12.15;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493813    GT:AD:DP:GQ:PL    0/1:21,19:40:99:516,0,649
1    228467333    rs11581037    C    G    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493813    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
1    228468566    rs4653934    A    G    172.20    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=15.65;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479390    GT:AD:DP:GQ:PL    0/1:5,6:11:99:202,0,137
1    228471379    rs56168609    G    C    275.82    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.78;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=16.22;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=R1818;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228471204_228471470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:8,9:17:99:306,0,248
1    228474817    rs4653935    G    A    62.57    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=8.94;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366704    GT:AD:DP:GQ:PL    0/1:3,4:7:92.56:93,0,102
1    228474840    rs4653936    G    C    75.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366704    GT:AD:DP:GQ:PL    0/1:3,3:6:96.18:106,0,96
1    228480282    rs1150908    A    G    2162.43    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.068;DB;DP=160;Dels=0.0;FS=4.754;HRun=1;HaplotypeScore=4.2468;MQ=59.57;MQ0=0;MQRankSum=0.516;QD=13.52;ReadPosRankSum=0.568;SNPEFF_AMINO_ACID_CHANGE=T2401;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228480224_228480487;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:77,81:160:99:2192,0,2335
1    228480964    rs10158357    A    G    526.84    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.505;QD=18.82;ReadPosRankSum=-2.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:11,17:28:99:557,0,316
1    228482028    rs4653547    G    C    1533.20    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.051;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.85;MQ0=0;MQRankSum=-0.131;QD=12.07;ReadPosRankSum=-1.091;SNPEFF_AMINO_ACID_CHANGE=L2616;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228481853_228482116;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:72,55:127:99:1563,0,2178
1    228482285    rs1150909    T    C    337.33    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=19;Dels=0.0;FS=1.871;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=17.75;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:8,11:19:99:367,0,263
1    228486404    rs56021350    C    T    957.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.132;DB;DP=68;Dels=0.0;FS=6.677;HRun=0;HaplotypeScore=4.3394;MQ=59.66;MQ0=0;MQRankSum=-2.251;QD=14.08;ReadPosRankSum=-1.749;SNPEFF_AMINO_ACID_CHANGE=T1089M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228486155_228486418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366707    GT:AD:DP:GQ:PL    0/1:34,34:68:99:988,0,996
1    228491633    rs11584418    G    A    1080.99    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.136;DB;DP=80;Dels=0.0;FS=0.928;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.375;QD=13.51;ReadPosRankSum=0.25;SNPEFF_AMINO_ACID_CHANGE=V1356I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228491376_228491639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366707    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1111,0,1233
1    228494357    rs3795795    C    T    295.19    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.858;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.847;QD=18.45;ReadPosRankSum=-0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:7,9:16:99:325,0,180
1    228494382    rs1150911    T    C    101.51    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=8.46;ReadPosRankSum=-1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:7,5:12:99:132,0,186
1    228494696    rs4653939    G    A    53.45    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.761;QD=4.11;ReadPosRankSum=0.761;SNPEFF_AMINO_ACID_CHANGE=A1126;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228494602_228494868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:10,3:13:83.45:83,0,329
1    228495664    rs419338    T    A    75.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.61;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:3,3:6:73.63:106,0,74
1    228495696    rs419173    T    C    146.64    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=12.22;ReadPosRankSum=1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:7,5:12:99:177,0,211
1    228496014    rs876180    G    A    126.23    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=11.48;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=T1342;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228495812_228496084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:4,7:11:99:156,0,123
1    228497053    rs379620    A    G    131.76    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=11.98;ReadPosRankSum=0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359599    GT:AD:DP:GQ:PL    0/1:5,6:11:99:162,0,174
1    228503677    rs1150912    A    G    65.49    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=13.1;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=H1500R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228503548_228503820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:1,4:5:27.97:95,0,28
1    228504472    rs1188732    T    C    98.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9979;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=9.85;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=C1569R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228504410_228504685;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:6,4:10:99:129,0,139
1    228504591    rs61825301    C    A    41.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.89;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=H1608Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228504410_228504685;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:3,3:6:45.16:71,0,45
1    228504669    rs61825302    G    A    69.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.55;QD=9.87;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=A1634;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228504410_228504685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:3,4:7:99:99,0,101
1    228505204    rs4653942    G    A    224.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.921;DB;DP=25;Dels=0.0;FS=3.821;HRun=0;HaplotypeScore=0.8941;MQ=59.07;MQ0=0;MQRankSum=-2.488;QD=8.97;ReadPosRankSum=0.472;SNPEFF_AMINO_ACID_CHANGE=R1653H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228505165_228505452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:15,10:25:99:254,0,417
1    228505668    rs1188729    C    G    518.37    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.825;DB;DP=44;Dels=0.0;FS=15.791;HRun=0;HaplotypeScore=0.0;MQ=58.41;MQ0=0;MQRankSum=-0.012;QD=11.78;ReadPosRankSum=-0.819;SNPEFF_AMINO_ACID_CHANGE=S1761C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228505593_228505874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:24,20:44:99:548,0,775
1    228505699    rs1188728    T    C    604.26    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.284;DB;DP=54;Dels=0.0;FS=11.681;HRun=0;HaplotypeScore=2.1904;MQ=59.14;MQ0=0;MQRankSum=-0.759;QD=11.19;ReadPosRankSum=1.254;SNPEFF_AMINO_ACID_CHANGE=G1771;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228505593_228505874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:27,26:54:99:634,0,612
1    228505739    rs3795801    G    A    799.97    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=0.626;DB;DP=56;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=1.7803;MQ=58.76;MQ0=0;MQRankSum=0.184;QD=14.29;ReadPosRankSum=-1.05;SNPEFF_AMINO_ACID_CHANGE=G1785S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228505593_228505874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:23,32:56:99:830,0,665
1    228509427    rs373610    A    G    1040.88    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=2.6;DB;DP=60;Dels=0.0;FS=9.379;HRun=2;HaplotypeScore=2.4673;MQ=59.3;MQ0=0;MQRankSum=-1.112;QD=17.35;ReadPosRankSum=-0.514;SNPEFF_AMINO_ACID_CHANGE=D2081G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228509045_228509915;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:25,34:60:99:1071,0,766
1    228523447    rs10799473    T    C    799.43    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.145;DB;DP=52;Dels=0.0;FS=1.227;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.505;QD=15.37;ReadPosRankSum=-0.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:23,29:52:99:829,0,705
1    228524642    rs56063628    T    C    81.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.49;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:1,3:4:27.27:112,0,27
1    228526011    rs11577699    C    T    96.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=10.67;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=A2793;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228525991_228526073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,164
1    228527844    rs11588701    T    G    212.81    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=15;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=14.19;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:8,7:15:99:243,0,249
1    228529097    .    C    T    297.57    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=21.26;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    0/1:4,10:14:99:328,0,116
1    228538829    rs11581897    C    T    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284548    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
1    228547901    rs12035900    C    T    166.89    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=18;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=9.27;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=D3555;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228547298_228548456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366709    GT:AD:DP:GQ:PL    0/1:11,7:18:99:197,0,356
1    228550429    rs11585049    C    T    50.20    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.254;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=3.86;ReadPosRankSum=0.085;SNPEFF_AMINO_ACID_CHANGE=P3906S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228550277_228550456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366707    GT:AD:DP:GQ:PL    0/1:10,3:13:80.19:80,0,325
1    228556788    rs3738685    C    T    410.03    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.068;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.998;QD=16.4;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366707    GT:AD:DP:GQ:PL    0/1:11,14:25:99:440,0,306
1    228560139    rs498382    A    G    303.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.37;SNPEFF_AMINO_ACID_CHANGE=S4854;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228558724_228560782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366707    GT:AD:DP:GQ:PL    1/1:0,13:13:27.07:337,27,0
1    228560700    rs512253    T    C    82.70    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=-0.878;QD=3.31;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=D5041;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228558724_228560782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366707    GT:AD:DP:GQ:PL    0/1:18,7:25:99:113,0,635
1    228560990    rs579897    G    A    79.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBSCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366707    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:109,0,30
1    228596304    .    C    T    615.83    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DP=36;Dels=0.0;FS=1.348;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.769;QD=17.11;ReadPosRankSum=1.249;SNPEFF_AMINO_ACID_CHANGE=T344;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228595737_228596452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295033    GT:AD:DP:GQ:PL    0/1:14,22:36:99:646,0,420
1    228612444    rs1188473    A    G    106.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST3H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366696    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
1    228612838    rs2230656    G    T    2642.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.43;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=I63;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228612546_228613026;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST3H3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366696    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2676,205,0
1    228613052    rs1188474    T    C    386.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.32;MQ0=0;QD=24.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST3H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366696    GT:AD:DP:GQ:PL    1/1:0,16:16:36.06:420,36,0
1    228645063    rs10916317    A    G    728.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.99;MQ0=0;QD=34.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST3H2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366695    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:761,60,0
1    228681749    rs3795817    C    T    126.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF187;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463833    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
1    228699477    rs6665115    T    C    1481.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=H105R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228699352_228699705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-915N17.9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400948    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1515,114,0
1    228871693    rs3738073    C    T    32.46    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.636;QD=2.32;ReadPosRankSum=-1.061;SNPEFF_AMINO_ACID_CHANGE=S68;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_228870824_228871751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOU;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366691    GT:AD:DP:GQ:PL    0/1:10,4:14:62.45:62,0,275
1    228878835    rs12402303    T    C    111.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=13.99;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366691    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,134
1    228878871    rs41270187    T    C    433.20    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.039;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.661;QD=18.83;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366691    GT:AD:DP:GQ:PL    0/1:9,14:23:99:463,0,290
1    228878888    rs41270189    C    T    619.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=20.66;ReadPosRankSum=0.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366691    GT:AD:DP:GQ:PL    0/1:12,18:30:99:650,0,409
1    229177946    .    A    C    160.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=13.38;ReadPosRankSum=1.191;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ISCA1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438679    GT:AD:DP:GQ:PL    0/1:6,6:12:99:191,0,204
1    229178058    rs4654640    C    T    977.11    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.336;DB;DP=78;Dels=0.0;FS=3.939;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.976;QD=12.53;ReadPosRankSum=0.097;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ISCA1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438679    GT:AD:DP:GQ:PL    0/1:46,32:78:99:1007,0,1397
1    229178412    rs610558    G    A    381.48    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=43;Dels=0.0;FS=1.394;HRun=0;HaplotypeScore=1.4679;MQ=58.92;MQ0=0;MQRankSum=-0.577;QD=8.87;ReadPosRankSum=-0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ISCA1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438679    GT:AD:DP:GQ:PL    0/1:27,15:43:99:411,0,921
1    229385256    rs6695100    G    A    113.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=14.23;ReadPosRankSum=-0.322;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323223    GT:AD:DP:GQ:PL    0/1:3,5:8:89.02:144,0,89
1    229422193    rs237764    T    C    701.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RAB4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366690    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:735,54,0
1    229434998    rs237778    A    G    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RAB4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366690    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    229438828    rs237787    G    A    518.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RAB4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366690    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:551,42,0
1    229461024    rs2282083    C    T    2632.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.551;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.71;MQ0=0;MQRankSum=-1.09;QD=33.32;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=P143;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_229457262_229461158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf96;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366686    GT:AD:DP:GQ:PL    1/1:3,76:79:91:2665,91,0
1    229580476    rs484940    T    C    45.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=11.47;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485119    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:77,6,0
1    229663064    rs113712941    GAGGAA    G    3681.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.0;HRun=0;HaplotypeScore=475.1291;IndelType=D;MQ=51.88;MQ0=1;QD=44.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344517    GT:AD:DP:GQ:PL    1/1:18,64:81:99:3682,193,0
1    229730452    rs2295625    G    A    1663.98    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=3.585;DB;DP=103;Dels=0.0;FS=2.75;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.576;QD=16.16;ReadPosRankSum=0.841;SNPEFF_AMINO_ACID_CHANGE=S454;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_229728868_229730841;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258281    GT:AD:DP:GQ:PL    0/1:48,55:103:99:1694,0,1258
1    229738170    rs3753886    T    G    755.20    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.882;DB;DP=53;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.65;QD=14.25;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=R248;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_229737942_229738666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258281    GT:AD:DP:GQ:PL    0/1:28,25:53:99:785,0,842
1    229738236    rs4925500    G    A    478.99    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.166;DB;DP=47;Dels=0.0;FS=4.375;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.877;QD=10.19;ReadPosRankSum=0.237;SNPEFF_AMINO_ACID_CHANGE=P226;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_229737942_229738666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258281    GT:AD:DP:GQ:PL    0/1:27,20:47:99:509,0,734
1    229746019    rs2273573    C    T    177.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.339;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=12.7;ReadPosRankSum=0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366674    GT:AD:DP:GQ:PL    0/1:7,7:14:99:208,0,181
1    229749804    rs12073055    C    T    42.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.25;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366674    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
1    229750343    rs2273574    T    G    289.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.062;QD=19.27;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258281    GT:AD:DP:GQ:PL    0/1:6,9:15:99:319,0,203
1    229768297    rs1473719    C    T    144.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=14.47;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258243    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,174
1    229772693    rs3811473    T    G    781.82    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=3.264;DB;DP=70;Dels=0.0;FS=2.026;HRun=1;HaplotypeScore=0.9992;MQ=59.73;MQ0=0;MQRankSum=-0.842;QD=11.17;ReadPosRankSum=-0.178;SNPEFF_AMINO_ACID_CHANGE=V778G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_229770664_229773994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258243    GT:AD:DP:GQ:PL    0/1:43,27:70:99:812,0,1446
1    229781532    rs881694    T    G    643.12    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.552;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.2;QD=14.29;ReadPosRankSum=1.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258243    GT:AD:DP:GQ:PL    0/1:22,23:45:99:673,0,647
1    229781744    rs2274994    T    C    669.04    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.179;DB;DP=44;Dels=0.0;FS=3.093;HRun=1;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=0.158;QD=15.21;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258243    GT:AD:DP:GQ:PL    0/1:21,23:44:99:699,0,618
1    229783236    rs6587349    T    C    1341.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258243    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1374,105,0
1    229783240    rs2274995    T    C    556.82    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.121;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.113;QD=13.26;ReadPosRankSum=0.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258243    GT:AD:DP:GQ:PL    0/1:20,22:42:99:587,0,624
1    229790048    rs7521953    A    G    960.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=66;Dels=0.0;FS=3.468;HRun=1;HaplotypeScore=2.9861;MQ=60.0;MQ0=0;MQRankSum=-0.866;QD=14.56;ReadPosRankSum=-0.302;SNPEFF_AMINO_ACID_CHANGE=R1430;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_229789996_229790135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258243    GT:AD:DP:GQ:PL    0/1:33,33:66:99:991,0,981
1    229795070    rs1048306    T    G    851.52    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.35;MQ0=0;MQRankSum=0.31;QD=13.3;ReadPosRankSum=0.255;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434387    GT:AD:DP:GQ:PL    0/1:34,30:64:99:882,0,1105
1    230461079    rs2306813    G    A    954.84    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.127;DB;DP=88;Dels=0.0;FS=4.656;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=10.85;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=C337;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_230461056_230461161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391860    GT:AD:DP:GQ:PL    0/1:54,34:88:99:985,0,1816
1    230473103    rs10864744    A    C    207.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321327    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
1    230497940    rs828479    G    T    106.32    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=14;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.4;QD=7.59;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321327    GT:AD:DP:GQ:PL    0/1:9,5:14:99:136,0,327
1    230498232    rs2820384    C    T    38.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321327    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:68,0,32
1    230503684    rs2632571    C    T    74.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=6.2;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321327    GT:AD:DP:GQ:PL    0/1:8,4:12:99:104,0,206
1    230504070    rs2820377    C    G    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.97;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321327    GT:AD:DP:GQ:PL    0/1:2,2:4:54.57:66,0,55
1    230513128    rs828463    G    A    186.38    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=26.63;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321327    GT:AD:DP:GQ:PL    0/1:1,6:7:16.73:216,0,17
1    230795177    rs1359866    T    C    398.67    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.219;DB;DP=36;Dels=0.0;FS=8.602;HRun=1;HaplotypeScore=0.9933;MQ=58.83;MQ0=0;MQRankSum=0.866;QD=11.07;ReadPosRankSum=-0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366668    GT:AD:DP:GQ:PL    0/1:21,15:36:99:429,0,741
1    230796375    rs3736982    A    C    366.42    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.675;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.84;MQ0=0;MQRankSum=0.219;QD=18.32;ReadPosRankSum=-2.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366668    GT:AD:DP:GQ:PL    0/1:7,13:20:99:396,0,204
1    230819295    rs5781596    ATTC    A    790.17    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=5.169;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=192.5742;IndelType=D;MQ=57.61;MQ0=0;MQRankSum=0.211;QD=17.56;ReadPosRankSum=0.799;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494371    GT:AD:DP:GQ:PL    0/1:24,21:45:99:829,0,1327
1    230819479    rs11440664    G    GT    433.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.441;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=100.5047;IndelType=I;MQ=56.55;MQ0=0;MQRankSum=-0.567;QD=20.64;ReadPosRankSum=-1.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494371    GT:AD:DP:GQ:PL    1/1:3,18:21:16.26:475,16,0
1    230820605    rs2296797    G    T    38.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.94;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494371    GT:AD:DP:GQ:PL    0/1:1,2:3:17.66:69,0,18
1    230820763    .    C    CACATT    983.43    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.422;DP=32;FS=0.0;HRun=0;HaplotypeScore=136.9978;IndelType=I;MQ=57.01;MQ0=0;MQRankSum=0.62;QD=30.73;ReadPosRankSum=-0.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494371    GT:AD:DP:GQ:PL    0/1:19,11:32:99:1022,0,988
1    230822607    rs1536591    G    A    230.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.18;QD=19.21;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494371    GT:AD:DP:GQ:PL    0/1:4,8:12:99:260,0,112
1    230823040    rs1536590    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494371    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    230825942    rs3000064    A    G    832.25    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.475;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.64;QD=16.32;ReadPosRankSum=1.863;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482012    GT:AD:DP:GQ:PL    0/1:25,26:51:99:862,0,839
1    230828987    rs2478534    C    A    205.30    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.521;DB;DP=31;Dels=0.0;FS=5.775;HRun=1;HaplotypeScore=1.9913;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=6.62;ReadPosRankSum=-0.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478710    GT:AD:DP:GQ:PL    0/1:19,12:31:99:235,0,632
1    230829139    rs1051038    A    G    788.46    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.039;DB;DP=48;Dels=0.0;FS=1.372;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.145;QD=16.43;ReadPosRankSum=0.125;SNPEFF_AMINO_ACID_CHANGE=*428;SNPEFF_CODON_CHANGE=taA/taG;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_1_230829038_230829200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546013    GT:AD:DP:GQ:PL    0/1:21,27:48:99:818,0,638
1    230840096    rs1926723    T    C    35.31    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.224;QD=1.68;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366667    GT:AD:DP:GQ:PL    0/1:17,4:21:65.30:65,0,560
1    230841687    rs7080    T    C    2912.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=L290;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_230841679_230841946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430091    GT:AD:DP:GQ:PL    1/1:0,90:91:99:2946,220,0
1    230845794    rs699    A    G    1361.96    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.838;DB;DP=104;Dels=0.0;FS=4.137;HRun=0;HaplotypeScore=2.5566;MQ=59.33;MQ0=0;MQRankSum=-1.195;QD=13.1;ReadPosRankSum=-0.443;SNPEFF_AMINO_ACID_CHANGE=M186T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_230845741_230845863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430091    GT:AD:DP:GQ:PL    0/1:44,59:104:99:1392,0,1141
1    230846679    rs11122576    T    C    127.55    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=8.5;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366667    GT:AD:DP:GQ:PL    0/1:10,5:15:99:158,0,331
1    230883466    rs12143120    C    T    289.04    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=19;Dels=0.0;FS=5.614;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.612;QD=15.21;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    0/1:9,10:19:99:319,0,224
1    230883484    rs6690251    T    C    267.10    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=20.55;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    0/1:4,9:13:99:297,0,117
1    230883499    rs6690254    T    C    243.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=20.26;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    0/1:4,8:12:99:273,0,129
1    230891248    rs2493145    C    T    375.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:409,30,0
1    230891333    rs2493146    C    T    179.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:212,15,0
1    230898231    rs2282318    T    A    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.59;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,99
1    230898494    rs2282319    C    T    575.61    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.437;DB;DP=39;Dels=0.0;FS=1.392;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.408;QD=14.76;ReadPosRankSum=1.423;SNPEFF_AMINO_ACID_CHANGE=N103;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_230898399_230898532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366666    GT:AD:DP:GQ:PL    0/1:21,18:39:99:606,0,594
1    230903234    rs11122590    A    G    181.80    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.559;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.448;QD=6.27;ReadPosRankSum=-1.721;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    0/1:20,9:29:99:212,0,690
1    230903350    rs3828126    T    C    1151.26    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.954;DB;DP=113;Dels=0.0;FS=1.617;HRun=1;HaplotypeScore=1.7335;MQ=59.8;MQ0=0;MQRankSum=-1.529;QD=10.19;ReadPosRankSum=-0.216;SNPEFF_AMINO_ACID_CHANGE=T137;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_230903287_230903455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366666    GT:AD:DP:GQ:PL    0/1:65,48:113:99:1181,0,1983
1    230904911    rs11122593    C    T    577.71    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=41;Dels=0.0;FS=2.807;HRun=3;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.484;QD=14.09;ReadPosRankSum=-0.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    0/1:19,22:41:99:608,0,623
1    230910339    rs7517389    G    A    605.75    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=50;Dels=0.0;FS=2.45;HRun=2;HaplotypeScore=1.7753;MQ=54.8;MQ0=0;MQRankSum=1.412;QD=12.11;ReadPosRankSum=1.793;SNPEFF_AMINO_ACID_CHANGE=K242;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_230910300_230910377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366666    GT:AD:DP:GQ:PL    0/1:26,24:50:99:636,0,647
1    230914612    rs12130847    A    G    120.97    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.12;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    0/1:3,5:8:92.88:151,0,93
1    230922001    rs11122602    G    C    115.93    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.56;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    0/1:3,4:7:88.86:146,0,89
1    230927353    rs6671302    T    A    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    230928512    rs7522057    C    G    818.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=29.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271971    GT:AD:DP:GQ:PL    1/1:0,28:28:78.18:851,78,0
1    230931020    .    C    G    33.01    QDFilter2    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.997;MQ=49.64;MQ0=0;MQRankSum=0.198;QD=1.94;ReadPosRankSum=1.495;SNPEFF_AMINO_ACID_CHANGE=A598G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_230930909_230931025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366666    GT:AD:DP:GQ:PL    0/1:3,14:17:52.78:63,0,53
1    230975454    rs1202550    A    G    117.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf198;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519360    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
1    231042732    rs3811502    T    A    1206.30    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=90;Dels=0.0;FS=0.868;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.591;QD=13.4;ReadPosRankSum=-0.097;SNPEFF_AMINO_ACID_CHANGE=V780;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_231041989_231042765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366662    GT:AD:DP:GQ:PL    0/1:49,41:90:99:1236,0,1527
1    231047310    rs140027784    TAC    T    575.57    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=4.675;DB;DP=37;FS=5.951;HRun=0;HaplotypeScore=118.3504;IndelType=D;MQ=59.0;MQ0=1;MQRankSum=-0.69;QD=15.15;ReadPosRankSum=1.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:21,17:37:99:615,0,1078
1    231047392    rs2153049    G    A    170.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=14.17;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:5,7:12:99:200,0,174
1    231052183    rs7537655    G    T    64.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=9.26;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486879    GT:AD:DP:GQ:PL    0/1:4,3:7:94.83:95,0,131
1    231057310    rs2275334    C    T    198.53    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.951;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=13.24;ReadPosRankSum=-2.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:8,7:15:99:229,0,290
1    231059784    rs3748774    C    T    263.27    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=23.93;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:3,8:11:85.67:293,0,86
1    231060736    rs3748775    T    C    1062.68    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=80;Dels=0.0;FS=0.987;HRun=1;HaplotypeScore=1.6988;MQ=59.71;MQ0=0;MQRankSum=-1.28;QD=13.28;ReadPosRankSum=1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1093,0,1255
1    231061564    rs4240944    A    C    72.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.37;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,145
1    231064578    rs5781609    T    TCTC    247.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=62.2979;IndelType=I;MQ=50.18;MQ0=0;MQRankSum=-0.956;QD=27.49;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481976    GT:AD:DP:GQ:PL    0/1:3,5:9:99:286,0,114
1    231064611    rs950029    G    A    274.43    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=24;Dels=0.0;FS=2.395;HRun=0;HaplotypeScore=0.8941;MQ=55.69;MQ0=0;MQRankSum=-1.101;QD=11.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481976    GT:AD:DP:GQ:PL    0/1:11,13:24:99:304,0,298
1    231067236    rs11122624    C    T    758.92    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.585;DB;DP=51;Dels=0.0;FS=1.378;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=14.88;ReadPosRankSum=-0.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519379    GT:AD:DP:GQ:PL    0/1:22,29:51:99:789,0,702
1    231067318    rs11122625    G    T    338.48    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.394;DB;DP=23;Dels=0.0;FS=4.419;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.657;QD=14.72;ReadPosRankSum=0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519379    GT:AD:DP:GQ:PL    0/1:12,11:23:99:368,0,373
1    231069652    rs1890351    A    C    464.38    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.392;DB;DP=33;Dels=0.0;FS=3.11;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=14.07;ReadPosRankSum=-0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:18,15:33:99:494,0,595
1    231075322    .    GA    G    72.79    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DP=13;FS=0.0;HRun=8;HaplotypeScore=30.7597;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=5.6;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466507    GT:AD:DP:GQ:PL    0/1:8,5:13:99:112,0,184
1    231079381    rs6541239    A    G    338.20    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.283;QD=26.02;ReadPosRankSum=-2.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:2,11:13:48.76:368,0,49
1    231081304    rs6673085    T    G    157.34    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.526;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.361;QD=7.87;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366661    GT:AD:DP:GQ:PL    0/1:14,6:20:99:187,0,476
1    231124055    rs10779804    T    C    2799.30    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=5.996;DB;DP=164;Dels=0.0;FS=2.146;HRun=0;HaplotypeScore=1.997;MQ=60.0;MQ0=0;MQRankSum=-0.994;QD=17.07;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310256    GT:AD:DP:GQ:PL    0/1:74,90:164:99:2829,0,2164
1    231126172    rs10864648    T    G    100.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.7;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310256    GT:AD:DP:GQ:PL    0/1:2,4:6:65.94:130,0,66
1    231336946    rs57632781    G    A    112.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.75;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366652    GT:AD:DP:GQ:PL    0/1:2,4:6:64.59:142,0,65
1    231339713    rs11806609    C    T    251.45    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.431;QD=9.67;ReadPosRankSum=2.048;SNPEFF_AMINO_ACID_CHANGE=D483;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_231339613_231339758;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM67;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449018    GT:AD:DP:GQ:PL    0/1:17,9:26:99:281,0,443
1    231344589    rs75728373    C    T    326.55    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=0.026;QD=12.09;ReadPosRankSum=0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366652    GT:AD:DP:GQ:PL    0/1:15,12:27:99:357,0,506
1    231344908    rs114415891    A    G    1055.50    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=53;Dels=0.0;FS=2.764;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=0.95;QD=19.92;ReadPosRankSum=0.141;SNPEFF_AMINO_ACID_CHANGE=M617V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_231344693_231344996;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449018    GT:AD:DP:GQ:PL    0/1:21,32:53:99:1085,0,573
1    231377081    rs518686    C    T    2026.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318906    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2059,165,0
1    231386612    rs508908    T    A    467.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366646    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:501,39,0
1    231396116    rs3215759    T    TTA    884.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=41.9419;IndelType=I;MQ=58.55;MQ0=0;QD=55.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366646    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:927,48,0
1    231396634    rs531592    T    C    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366646    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
1    231400905    rs849714    A    G    169.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366646    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
1    231401204    rs6702011    T    C    564.79    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=49;Dels=0.0;FS=1.427;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.722;QD=11.53;ReadPosRankSum=1.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366646    GT:AD:DP:GQ:PL    0/1:29,20:49:99:595,0,948
1    231401596    rs532226    T    C    1370.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366646    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1403,108,0
1    231401902    rs574553    G    A    3044.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=E244;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_231401760_231401911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366646    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3078,223,0
1    231403265    rs474297    T    C    88.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436239    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:120,9,0
1    231406295    rs3767758    T    C    170.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436239    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
1    231406961    rs539699    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492459    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    231480507    rs1009227    A    G    946.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.788;DB;DP=30;Dels=0.0;FS=3.784;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.457;QD=31.55;ReadPosRankSum=1.455;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492437    GT:AD:DP:GQ:PL    1/1:2,28:30:33.46:980,33,0
1    231486908    rs2749716    T    C    74.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=24.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008440    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
1    231486989    rs2474633    A    C    403.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=51.25;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008440    GT:AD:DP:GQ:PL    1/1:5,12:17:33.10:437,33,0
1    231487017    rs2474634    T    C    865.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008440    GT:AD:DP:GQ:PL    1/1:0,27:28:69.22:899,69,0
1    231488524    rs2437150    C    T    1580.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.45;MQ0=0;QD=35.13;SNPEFF_AMINO_ACID_CHANGE=P296L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_231488356_231490769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf124;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295050    GT:AD:DP:GQ:PL    1/1:1,44:45:99:1614,126,0
1    231502244    .    A    AG    316.27    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DP=24;FS=0.0;HRun=0;HaplotypeScore=204.356;IndelType=I;MQ=56.04;MQ0=0;MQRankSum=0.535;QD=13.18;ReadPosRankSum=-1.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366641    GT:AD:DP:GQ:PL    0/1:15,8:24:99:355,0,184
1    231502245    rs1435167    T    A    140.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.04;FS=0.0;HRun=14;HaplotypeScore=8.9374;MQ=56.04;MQ0=0;QD=5.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366641    GT:AD:DP:GQ:PL    1/1:0,23:23:18.03:174,18,0
1    231502310    rs1435166    T    C    277.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366641    GT:AD:DP:GQ:PL    1/1:0,11:11:27.06:311,27,0
1    231506557    rs2256908    G    A    269.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366641    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:302,24,0
1    231664607    rs41303127    C    T    732.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366639    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:765,57,0
1    231931048    rs2273890    T    C    356.24    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.168;DB;DP=21;Dels=0.0;FS=5.651;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=16.96;ReadPosRankSum=1.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295051    GT:AD:DP:GQ:PL    0/1:9,12:21:99:386,0,264
1    231935661    rs55708369    C    T    31.40    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.12;MQ0=0;MQRankSum=0.0;QD=7.85;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295051    GT:AD:DP:GQ:PL    0/1:2,2:4:24.41:61,0,24
1    231935699    rs4658884    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=0.736;QD=13.33;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295051    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:71,6,0
1    231936016    rs2759354    A    G    542.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295051    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:576,42,0
1    231953994    rs6672782    C    G    475.68    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.263;QD=19.03;ReadPosRankSum=-0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295051    GT:AD:DP:GQ:PL    0/1:11,14:25:99:506,0,328
1    231954101    rs6675281    C    T    1227.62    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.569;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.1898;MQ=59.71;MQ0=0;MQRankSum=-0.058;QD=15.35;ReadPosRankSum=0.135;SNPEFF_AMINO_ACID_CHANGE=L485F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_231954075_231954263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532576    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1258,0,1203
1    231955906    rs12135059    G    A    165.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295051    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
1    231956086    rs11122343    A    T    681.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295051    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:714,51,0
1    232002392    rs3082    A    G    668.12    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.651;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.56;QD=17.58;ReadPosRankSum=-0.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366637    GT:AD:DP:GQ:PL    0/1:14,24:38:99:698,0,428
1    232535030    rs629939    C    T    661.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495863    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:695,51,0
1    232596653    rs1766574    A    G    766.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=26.44;SNPEFF_AMINO_ACID_CHANGE=H1025;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_232596633_232596907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262861    GT:AD:DP:GQ:PL    1/1:0,29:29:66.15:800,66,0
1    232650750    rs3795366    A    G    2743.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.47;MQ0=0;QD=31.54;SNPEFF_AMINO_ACID_CHANGE=S112;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_232649603_232651312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262861    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2777,220,0
1    232650867    rs4649383    C    T    2664.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=K73;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_232649603_232651312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262861    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2698,208,0
1    232941354    rs12567597    G    T    194.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=19.47;SNPEFF_AMINO_ACID_CHANGE=L195;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_232940643_232946092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1383;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418460    GT:AD:DP:GQ:PL    1/1:0,10:10:18.05:228,18,0
1    233086468    .    C    G    181.80    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.455;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.007;QD=8.26;ReadPosRankSum=1.455;SNPEFF_AMINO_ACID_CHANGE=H4Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_233086386_233086490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTPCR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366627    GT:AD:DP:GQ:PL    0/1:14,8:22:99:212,0,351
1    233091463    rs12725558    T    A    224.81    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.439;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.17;MQ0=0;MQRankSum=-0.153;QD=8.99;ReadPosRankSum=1.194;SNPEFF_AMINO_ACID_CHANGE=V65;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_233091303_233091465;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTPCR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366627    GT:AD:DP:GQ:PL    0/1:17,8:25:99:255,0,527
1    233296891    rs2296515    T    C    280.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:313,24,0
1    233296908    rs2296516    T    G    297.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:330,27,0
1    233362930    rs701176    G    A    1686.08    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=5.069;DB;DP=104;Dels=0.0;FS=1.012;HRun=0;HaplotypeScore=0.8667;MQ=59.82;MQ0=0;MQRankSum=0.863;QD=16.21;ReadPosRankSum=1.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:47,57:104:99:1716,0,1082
1    233395214    rs2139998    T    A    235.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.03;QD=14.74;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:6,10:16:99:266,0,191
1    233397752    rs6701073    T    C    712.92    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=72;Dels=0.0;FS=2.657;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.664;QD=9.9;ReadPosRankSum=-2.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:44,28:72:99:743,0,1386
1    233398670    rs12132556    C    A    1414.58    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=2.816;DB;DP=107;Dels=0.0;FS=11.268;HRun=1;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=1.369;QD=13.22;ReadPosRankSum=0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:61,46:107:99:1445,0,2075
1    233398713    rs1033325    C    T    1831.75    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.967;DB;DP=161;Dels=0.0;FS=3.49;HRun=3;HaplotypeScore=0.9734;MQ=59.86;MQ0=0;MQRankSum=0.61;QD=11.38;ReadPosRankSum=-1.638;SNPEFF_AMINO_ACID_CHANGE=R117K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_233398704_233398909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:88,73:161:99:1862,0,2943
1    233398927    rs1033324    C    G    523.13    HaplotypeScoreFilter13    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.631;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=19.5718;MQ=60.22;MQ0=0;MQRankSum=0.129;QD=11.89;ReadPosRankSum=-0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:22,22:44:99:553,0,720
1    233398931    rs5781734    G    GC    726.82    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=4.563;DB;DP=36;FS=1.868;HRun=0;HaplotypeScore=160.0085;IndelType=I;MQ=60.26;MQ0=0;MQRankSum=-0.444;QD=20.19;ReadPosRankSum=-0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:17,19:36:99:766,0,600
1    233424788    rs1294329    T    G    1351.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.481;DB;DP=90;Dels=0.0;FS=2.847;HRun=1;HaplotypeScore=0.0;MQ=54.35;MQ0=0;MQRankSum=-1.742;QD=15.02;ReadPosRankSum=-1.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:40,50:90:99:1382,0,1314
1    233431241    rs10442595    G    A    70.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.66;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_233431072_233431459;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCNXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258229    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:101,0,28
1    233489499    rs7539016    A    G    337.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.477;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.675;QD=12.51;ReadPosRankSum=-0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-862P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366623    GT:AD:DP:GQ:PL    0/1:12,15:27:99:368,0,375
1    233489529    rs7549137    G    A    388.31    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=27;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.9469;MQ=59.14;MQ0=0;MQRankSum=-1.147;QD=14.38;ReadPosRankSum=-0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-862P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366623    GT:AD:DP:GQ:PL    0/1:15,12:27:99:418,0,486
1    233489707    rs7551511    G    T    342.73    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=44;Dels=0.02;FS=1.285;HRun=2;HaplotypeScore=1.933;MQ=59.49;MQ0=0;MQRankSum=-0.479;QD=7.62;ReadPosRankSum=-1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-862P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366623    GT:AD:DP:GQ:PL    0/1:29,15:44:99:373,0,896
1    233490408    rs2049183    T    A    206.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-862P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366623    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
1    233490536    .    A    AATGTCTTGGGGATAATCTG    2466.49    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DP=35;FS=4.59;HRun=0;HaplotypeScore=498.9541;IndelType=I;MQ=55.13;MQ0=0;MQRankSum=-2.622;QD=70.47;ReadPosRankSum=-1.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-862P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366623    GT:AD:DP:GQ:PL    0/1:25,1:35:99:2506,0,2877
1    233490543    rs2049182    G    A    142.77    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=3.438;DB;DP=35;Dels=0.0;FS=6.764;HRun=0;HaplotypeScore=0.9332;MQ=56.22;MQ0=0;MQRankSum=-2.8;QD=4.08;ReadPosRankSum=-3.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-862P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366623    GT:AD:DP:GQ:PL    0/1:21,13:35:99:173,0,610
1    233512355    rs12731651    C    T    182.37    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=16.58;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-862P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366623    GT:AD:DP:GQ:PL    0/1:5,6:11:99:212,0,140
1    233515413    rs1402815    G    A    604.86    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.61;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.594;QD=11.63;ReadPosRankSum=-0.82;SNPEFF_AMINO_ACID_CHANGE=P333;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_233514677_233515456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-862P8.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366622    GT:AD:DP:GQ:PL    0/1:26,25:52:99:635,0,815
1    233785716    rs17814096    T    G    1833.43    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.848;DB;DP=129;Dels=0.0;FS=2.295;HRun=0;HaplotypeScore=4.087;MQ=59.86;MQ0=0;MQRankSum=0.048;QD=14.21;ReadPosRankSum=-0.229;SNPEFF_AMINO_ACID_CHANGE=V10;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_233785687_233785795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446915    GT:AD:DP:GQ:PL    0/1:63,66:129:99:1863,0,1979
1    233785786    rs4649241    A    C    1740.87    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.017;DB;DP=139;Dels=0.0;FS=0.636;HRun=0;HaplotypeScore=0.7887;MQ=59.83;MQ0=0;MQRankSum=-0.002;QD=12.52;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=S34R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_233785687_233785795;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446915    GT:AD:DP:GQ:PL    0/1:72,67:139:99:1771,0,2298
1    234367549    rs2236220    T    C    600.96    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.024;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.141;QD=14.66;ReadPosRankSum=-0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366617    GT:AD:DP:GQ:PL    0/1:16,25:41:99:631,0,458
1    234454405    rs657010    A    C    500.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366617    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:534,45,0
1    234509259    rs10910420    G    C    400.46    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.505;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.041;QD=10.01;ReadPosRankSum=-2.14;SNPEFF_AMINO_ACID_CHANGE=S16T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_234509202_234509424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366615    GT:AD:DP:GQ:PL    0/1:24,16:40:99:430,0,811
1    234509858    rs67513481    GT    G    39.65    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=13;FS=0.0;HRun=17;HaplotypeScore=87.6978;IndelType=D;MQ=59.06;MQ0=0;MQRankSum=0.135;QD=3.05;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366613    GT:AD:DP:GQ:PL    0/1:5,7:13:74.16:79,0,74
1    234510262    rs4300255    A    G    99.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.98;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366612    GT:AD:DP:GQ:PL    0/1:6,4:10:99:130,0,211
1    234519385    rs10797539    T    C    64.60    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.46;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366612    GT:AD:DP:GQ:PL    0/1:7,3:10:94.60:95,0,257
1    234519452    rs113315735    C    CT    555.25    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.533;DB;DP=46;FS=2.102;HRun=9;HaplotypeScore=137.7646;IndelType=I;MQ=59.23;MQ0=0;MQRankSum=-0.246;QD=12.07;ReadPosRankSum=-0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366612    GT:AD:DP:GQ:PL    0/1:23,22:46:99:594,0,420
1    234527575    rs3862040    C    T    172.35    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=55.66;MQ0=0;MQRankSum=-0.717;QD=15.67;ReadPosRankSum=2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:5,6:11:99:202,0,129
1    234527992    rs3754318    A    G    350.66    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.474;QD=20.63;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:5,12:17:99:381,0,155
1    234528006    rs3754317    A    G    413.36    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.505;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=20.67;ReadPosRankSum=0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:6,14:20:99:443,0,188
1    234528373    rs7523423    C    T    533.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.11;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.36;MQ0=0;MQRankSum=0.079;QD=14.81;ReadPosRankSum=-0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:18,18:36:99:563,0,504
1    234529552    rs2175594    C    T    1192.07    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=5.03;DB;DP=78;Dels=0.0;FS=11.868;HRun=0;HaplotypeScore=1.3123;MQ=59.7;MQ0=0;MQRankSum=-0.619;QD=15.28;ReadPosRankSum=1.566;SNPEFF_AMINO_ACID_CHANGE=A1425;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_234529392_234529583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:37,41:78:99:1222,0,953
1    234529570    rs2175593    G    A    974.38    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.018;DB;DP=69;Dels=0.0;FS=9.064;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.187;QD=14.12;ReadPosRankSum=-0.549;SNPEFF_AMINO_ACID_CHANGE=V1419;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_234529392_234529583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1004,0,1035
1    234541622    rs2271444    G    T    396.17    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.871;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.11;MQ0=0;MQRankSum=-0.132;QD=15.24;ReadPosRankSum=0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463793    GT:AD:DP:GQ:PL    0/1:10,16:26:99:426,0,266
1    234546014    rs72763876    G    A    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463793    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    234546245    rs1141264    C    T    824.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.805;DB;DP=97;Dels=0.0;FS=7.199;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.823;QD=8.5;ReadPosRankSum=0.946;SNPEFF_AMINO_ACID_CHANGE=T1246;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_234546191_234546277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:64,32:97:99:854,0,1753
1    234563060    rs443685    T    C    540    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.331;DB;DP=32;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.798;QD=16.87;ReadPosRankSum=-1.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:12,20:32:99:570,0,275
1    234564829    .    G    T    177.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=17.71;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:4,6:10:99:207,0,129
1    234596202    rs270511    T    A    177.82    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=17.78;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,124
1    234603075    rs270503    G    T    99.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.18;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:3,4:7:99:129,0,102
1    234603386    rs270502    G    T    438.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=24;Dels=0.0;FS=3.851;HRun=0;HaplotypeScore=0.9789;MQ=59.22;MQ0=0;MQRankSum=-0.337;QD=18.29;ReadPosRankSum=0.153;SNPEFF_AMINO_ACID_CHANGE=L370;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_234603248_234603396;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:8,16:24:99:469,0,275
1    234608326    rs271775    C    A    252.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=25.27;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040877    GT:AD:DP:GQ:PL    0/1:2,8:10:54.31:283,0,54
1    235285457    rs4659822    C    T    62.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.322;QD=7.85;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366607    GT:AD:DP:GQ:PL    0/1:5,3:8:92.82:93,0,185
1    235285740    rs4659823    C    T    1435.15    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.065;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8136;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=15.27;ReadPosRankSum=-0.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366607    GT:AD:DP:GQ:PL    0/1:42,52:94:99:1465,0,1352
1    235290922    rs4329572    C    A    168.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366606    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
1    235311767    rs140896073    C    T    561.12    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.888;DB;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.6668;MQ=59.52;MQ0=0;MQRankSum=-0.503;QD=11.69;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476261    GT:AD:DP:GQ:PL    0/1:26,21:48:99:591,0,734
1    235335817    rs12035188    C    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474401    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
1    235338377    rs12731779    G    A    102.07    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=9.28;ReadPosRankSum=-2.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491632    GT:AD:DP:GQ:PL    0/1:6,5:11:99:132,0,134
1    235357303    rs34768226    A    ATG    816.55    PASS    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=4.831;DB;DP=44;FS=3.505;HRun=0;HaplotypeScore=186.7351;IndelType=I;MQ=52.17;MQ0=0;MQRankSum=-4.757;QD=18.56;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:31,13:44:99:856,0,1143
1    235357314    rs35180803    AT    A    592.88    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=5.747;DB;DP=50;FS=7.185;HRun=2;HaplotypeScore=193.4659;IndelType=D;MQ=52.48;MQ0=0;MQRankSum=-4.262;QD=11.86;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:30,20:50:99:632,0,1152
1    235357543    rs10802438    A    G    174.24    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.529;QD=14.52;ReadPosRankSum=-1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:5,7:12:99:204,0,171
1    235383188    rs4659654    A    G    755.98    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=61;Dels=0.0;FS=1.27;HRun=0;HaplotypeScore=0.9958;MQ=59.69;MQ0=0;MQRankSum=-0.923;QD=12.39;ReadPosRankSum=0.923;SNPEFF_AMINO_ACID_CHANGE=D501;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_235383108_235383283;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:37,24:61:99:786,0,1233
1    235383351    rs3795250    T    C    63.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.04;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:6,3:9:93.36:93,0,217
1    235392354    rs4659674    T    A    77.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.95;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,106
1    235392546    rs12731746    T    C    519.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.613;DB;DP=38;Dels=0.0;FS=7.125;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.701;QD=13.68;ReadPosRankSum=1.022;SNPEFF_AMINO_ACID_CHANGE=E299;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_235392546_235392700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:19,19:38:99:550,0,584
1    235394278    rs12753166    G    T    133.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=14.88;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:3,6:9:54.44:164,0,54
1    235394541    rs7518225    A    C    168.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.678;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=1.103;QD=10.53;ReadPosRankSum=1.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:8,8:16:99:199,0,223
1    235490391    rs3840452    CA    C    92.09    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=55.9237;IndelType=D;MQ=58.24;MQ0=0;MQRankSum=-0.72;QD=13.16;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARID4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264183    GT:AD:DP:GQ:PL    0/1:2,5:7:71.93:131,0,72
1    235504807    rs2789368    C    T    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282841    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    235505313    rs3841735    A    AT    476.24    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.305;DB;DP=32;FS=3.467;HRun=7;HaplotypeScore=68.8266;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=0.793;QD=14.88;ReadPosRankSum=-0.944;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282841    GT:AD:DP:GQ:PL    0/1:15,17:32:99:515,0,338
1    235594182    rs2291687    A    G    259.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.883;QD=14.39;ReadPosRankSum=1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366601    GT:AD:DP:GQ:PL    0/1:9,9:18:99:289,0,288
1    235598973    rs2055127    C    T    440.54    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.34;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;MQRankSum=1.267;QD=20.02;ReadPosRankSum=0.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461651    GT:AD:DP:GQ:PL    0/1:8,14:22:99:471,0,269
1    235601958    rs3819974    G    T    66.13    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=6.61;ReadPosRankSum=1.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482230    GT:AD:DP:GQ:PL    0/1:7,3:10:96.12:96,0,255
1    235602404    rs2270538    G    A    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.99;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482230    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,153
1    235628908    rs1305556    G    A    1174.28    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.673;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=1.333;QD=15.66;ReadPosRankSum=1.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366599    GT:AD:DP:GQ:PL    0/1:35,40:75:99:1204,0,997
1    235647631    rs291387    G    T    1219.54    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.091;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.5;MQ0=0;MQRankSum=-0.419;QD=13.26;ReadPosRankSum=-0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313984    GT:AD:DP:GQ:PL    0/1:50,42:92:99:1250,0,1655
1    235648025    rs291388    C    A    155.72    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.95;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313984    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:186,0,22
1    235652513    rs291396    T    C    608.76    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.59;MQ0=0;MQRankSum=-0.331;QD=10.87;ReadPosRankSum=1.468;SNPEFF_AMINO_ACID_CHANGE=E107;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_235652473_235652573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALNT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366600    GT:AD:DP:GQ:PL    0/1:31,25:56:99:639,0,882
1    235715523    rs14326    A    G    811.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.201;DB;DP=70;Dels=0.0;FS=2.37;HRun=1;HaplotypeScore=2.6917;MQ=59.67;MQ0=0;MQRankSum=-0.291;QD=11.59;ReadPosRankSum=0.03;SNPEFF_AMINO_ACID_CHANGE=A38;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_235714132_235715537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366597    GT:AD:DP:GQ:PL    0/1:40,30:70:99:841,0,1322
1    235715556    rs423026    C    G    588.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.091;DB;DP=49;Dels=0.0;FS=3.281;HRun=0;HaplotypeScore=2.6175;MQ=59.05;MQ0=0;MQRankSum=-1.97;QD=12.01;ReadPosRankSum=-0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366597    GT:AD:DP:GQ:PL    0/1:28,21:49:99:619,0,914
1    235715601    rs400948    A    G    302.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.718;DB;DP=20;Dels=0.0;FS=3.245;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.567;QD=15.13;ReadPosRankSum=-1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366597    GT:AD:DP:GQ:PL    0/1:10,10:20:99:333,0,343
1    235715617    rs452950    A    C    150.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DB;DP=16;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.053;QD=9.43;ReadPosRankSum=-0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366597    GT:AD:DP:GQ:PL    0/1:8,8:16:99:181,0,279
1    235715661    rs387492    A    G    152.19    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=16.91;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366597    GT:AD:DP:GQ:PL    0/1:4,5:9:99:182,0,128
1    235747005    rs2774335    C    T    535.82    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.963;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.63;MQ0=0;MQRankSum=0.02;QD=10.51;ReadPosRankSum=1.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366597    GT:AD:DP:GQ:PL    0/1:30,21:51:99:566,0,984
1    235747154    rs2774336    A    G    722.77    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=59;Dels=0.0;FS=13.954;HRun=1;HaplotypeScore=2.8905;MQ=59.22;MQ0=0;MQRankSum=0.251;QD=12.25;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366597    GT:AD:DP:GQ:PL    0/1:32,27:59:99:753,0,1123
1    235826382    rs36014994    TA    T    388.40    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=3.287;DB;DP=68;FS=1.209;HRun=13;HaplotypeScore=233.0655;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=1.194;QD=5.71;ReadPosRankSum=-1.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:41,27:68:99:427,0,609
1    235827443    rs3819013    T    C    526.11    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.758;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.153;QD=16.44;ReadPosRankSum=-0.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:13,19:32:99:556,0,452
1    235827641    rs12092604    C    T    253.43    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=19.49;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:5,8:13:99:283,0,171
1    235856901    rs3754232    G    A    161.03    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=14.64;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:5,6:11:99:191,0,176
1    235860340    rs7541057    C    T    263.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.036;QD=12.57;ReadPosRankSum=1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:12,9:21:99:294,0,401
1    235872665    rs2275856    T    C    111.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.93;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475277    GT:AD:DP:GQ:PL    0/1:4,4:8:99:141,0,136
1    235887276    rs6667717    G    T    389.28    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=32;Dels=0.0;FS=1.71;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.02;QD=12.16;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:16,15:32:99:419,0,532
1    235896726    rs6429275    C    T    154.56    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.32;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461526    GT:AD:DP:GQ:PL    0/1:3,5:8:89.83:185,0,90
1    235918688    rs71576487    C    CAAAAG    1990.02    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.599;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=417.0191;IndelType=I;MQ=60.65;MQ0=0;MQRankSum=0.068;QD=33.17;ReadPosRankSum=-2.316;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489585    GT:AD:DP:GQ:PL    0/1:13,23:60:99:2029,0,646
1    235922228    rs3738519    T    C    256.20    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;MQRankSum=-1.558;QD=15.07;ReadPosRankSum=0.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489585    GT:AD:DP:GQ:PL    0/1:6,11:17:99:286,0,160
1    235929237    rs12565325    A    G    285.75    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.594;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9975;MQ=60.0;MQ0=0;MQRankSum=-2.025;QD=12.99;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:12,10:22:99:316,0,423
1    235940450    rs2273584    C    T    1108.11    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.192;DB;DP=67;Dels=0.0;FS=6.981;HRun=3;HaplotypeScore=1.6609;MQ=60.0;MQ0=0;MQRankSum=-1.595;QD=16.54;ReadPosRankSum=-0.662;SNPEFF_AMINO_ACID_CHANGE=K1791;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_235940363_235940608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:30,37:67:99:1138,0,910
1    235945294    rs6696123    T    C    681.78    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.848;DB;DP=38;Dels=0.0;FS=1.336;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.99;QD=17.94;ReadPosRankSum=0.192;SNPEFF_AMINO_ACID_CHANGE=L1652;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_235945227_235945387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:16,22:38:99:712,0,544
1    235945502    rs2011390    A    G    118.29    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=19.71;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492844    GT:AD:DP:GQ:PL    0/1:1,5:6:27.60:148,0,28
1    235972435    rs3820553    T    C    1599.35    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.273;DB;DP=92;Dels=0.0;FS=12.609;HRun=0;HaplotypeScore=1.6584;MQ=59.55;MQ0=0;MQRankSum=0.839;QD=17.38;ReadPosRankSum=-1.894;SNPEFF_AMINO_ACID_CHANGE=L561;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_235971755_235973834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:40,52:92:99:1629,0,1279
1    235972867    rs1063128    T    C    645.49    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.266;DB;DP=52;Dels=0.0;FS=8.114;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=12.41;ReadPosRankSum=-2.193;SNPEFF_AMINO_ACID_CHANGE=Q417;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_235971755_235973834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389793    GT:AD:DP:GQ:PL    0/1:28,24:52:99:675,0,947
1    236142565    rs1536132    T    C    76.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
1    236154012    rs1041111    C    T    227.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:261,21,0
1    236175153    rs2031486    T    C    410.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=32;Dels=0.0;FS=1.845;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.719;QD=12.83;ReadPosRankSum=0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    0/1:16,16:32:99:441,0,516
1    236175339    rs2031487    T    C    196.83    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.736;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=2.045;QD=7.87;ReadPosRankSum=0.501;SNPEFF_AMINO_ACID_CHANGE=V803;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236175221_236175343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    0/1:14,11:25:99:227,0,408
1    236205061    rs4584382    C    T    231.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:264,21,0
1    236205121    rs4297282    T    C    778.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:812,60,0
1    236205704    rs12033187    C    T    969.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.14;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    1/1:0,26:27:78.21:1003,78,0
1    236208773    rs10733133    C    T    1153.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.815;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.815;QD=32.04;ReadPosRankSum=-1.427;SNPEFF_AMINO_ACID_CHANGE=V246I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236208757_236208983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    1/1:1,34:36:51.07:1187,51,0
1    236209024    rs3768088    C    G    340.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:373,27,0
1    236212038    rs6665008    G    A    208.44    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=12.26;ReadPosRankSum=-1.395;SNPEFF_AMINO_ACID_CHANGE=S159;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236211990_236212289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264187    GT:AD:DP:GQ:PL    0/1:9,8:17:99:238,0,258
1    236368227    rs1254207    C    T    30.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.09;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR137B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366592    GT:AD:DP:GQ:PL    0/1:4,2:6:60.52:61,0,144
1    236368391    rs66766039    C    CT    1942.99    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.272;DB;DP=95;FS=2.019;HRun=1;HaplotypeScore=252.6819;IndelType=I;MQ=58.89;MQ0=0;MQRankSum=1.65;QD=20.45;ReadPosRankSum=0.558;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR137B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366592    GT:AD:DP:GQ:PL    0/1:44,51:95:99:1982,0,1246
1    236368708    rs1254206    T    C    404.24    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.141;DB;DP=19;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=21.28;ReadPosRankSum=1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR137B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419162    GT:AD:DP:GQ:PL    0/1:7,12:19:99:434,0,198
1    236381825    rs1055851    G    C    948.60    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=58;Dels=0.0;FS=3.806;HRun=0;HaplotypeScore=0.7887;MQ=59.68;MQ0=0;MQRankSum=-0.905;QD=16.36;ReadPosRankSum=-0.441;SNPEFF_AMINO_ACID_CHANGE=H465Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236378855_236381876;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354619    GT:AD:DP:GQ:PL    0/1:22,36:58:99:979,0,603
1    236381897    rs1615601    T    A    833.23    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.775;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.086;QD=16.34;ReadPosRankSum=-1.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264181    GT:AD:DP:GQ:PL    0/1:22,29:51:99:863,0,661
1    236381917    rs1614938    T    A    551.08    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=60.0;MQ0=0;MQRankSum=1.578;QD=13.44;ReadPosRankSum=-0.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264181    GT:AD:DP:GQ:PL    0/1:20,21:41:99:581,0,589
1    236381987    rs1749598    A    G    159.78    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=14.53;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264181    GT:AD:DP:GQ:PL    0/1:3,8:11:83.27:190,0,83
1    236381989    rs1749599    C    A    155.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=12.98;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264181    GT:AD:DP:GQ:PL    0/1:4,8:12:99:186,0,124
1    236383889    rs2463192    T    A    140.84    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.12;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354619    GT:AD:DP:GQ:PL    0/1:2,5:7:62.39:171,0,62
1    236383910    rs2463191    G    A    116.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.47;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354619    GT:AD:DP:GQ:PL    0/1:2,4:6:64.95:147,0,65
1    236384022    rs34880815    A    ATTT    1580.44    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.23;DB;DP=69;FS=2.235;HRun=9;HaplotypeScore=271.4043;IndelType=I;MQ=56.9;MQ0=0;MQRankSum=-1.038;QD=22.9;ReadPosRankSum=0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354619    GT:AD:DP:GQ:PL    0/1:39,26:69:99:1619,0,1129
1    236384278    rs1405624    G    C    366.04    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=57.41;MQ0=0;MQRankSum=0.417;QD=12.62;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264181    GT:AD:DP:GQ:PL    0/1:16,13:29:99:396,0,556
1    236385165    rs2463189    G    C    62.12    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=5.18;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264181    GT:AD:DP:GQ:PL    0/1:8,3:12:92.12:92,0,287
1    236385360    rs2477587    C    T    88.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=6.78;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR137B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477559    GT:AD:DP:GQ:PL    0/1:8,4:13:99:118,0,259
1    236385379    rs2463188    A    G    96.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=9.7;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR137B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477559    GT:AD:DP:GQ:PL    0/1:6,4:10:99:127,0,224
1    236393654    rs2812471    A    G    1214.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=37.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354619    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1248,93,0
1    236398938    rs1268614    C    T    138.79    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=12.62;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    0/1:6,5:11:99:169,0,221
1    236399442    rs1254194    G    T    259.93    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.552;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.68;MQ0=0;MQRankSum=-0.367;QD=13.68;ReadPosRankSum=1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366589    GT:AD:DP:GQ:PL    0/1:10,9:19:99:290,0,354
1    236406593    rs2695061    T    C    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    236413147    rs1726639    T    C    607.47    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.108;QD=14.82;ReadPosRankSum=0.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    0/1:21,20:41:99:637,0,680
1    236413230    rs2477599    T    A    979.39    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.053;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7356;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=13.6;ReadPosRankSum=-0.934;SNPEFF_AMINO_ACID_CHANGE=D10V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236413185_236413267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366589    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1009,0,977
1    236413282    rs2056713    G    A    803.58    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.615;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=2.147;QD=15.16;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    0/1:25,28:53:99:834,0,782
1    236413362    rs2477598    C    T    421.48    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.267;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=20.07;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    0/1:8,13:21:99:451,0,245
1    236413384    rs2477597    T    C    168.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=21.08;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    0/1:2,6:8:59.23:199,0,59
1    236415347    rs60724318    T    C    1142.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.438;DB;DP=63;Dels=0.0;FS=3.599;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.701;QD=18.13;ReadPosRankSum=0.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    0/1:27,36:63:99:1172,0,777
1    236415444    rs1618510    G    A    789.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.172;QD=23.91;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    0/1:11,22:33:99:819,0,353
1    236433135    rs3834089    AT    A    1505.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=1;HaplotypeScore=90.2458;IndelType=D;MQ=61.16;MQ0=0;QD=40.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327333    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1548,111,0
1    236557771    rs966365    G    A    1156.10    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.015;DB;DP=88;Dels=0.0;FS=7.212;HRun=0;HaplotypeScore=1.9877;MQ=58.95;MQ0=0;MQRankSum=0.022;QD=13.14;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=M9I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236557578_236557805;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334232    GT:AD:DP:GQ:PL    0/1:42,46:88:99:1186,0,1303
1    236557928    rs966364    G    A    140.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.13;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=10.04;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334232    GT:AD:DP:GQ:PL    0/1:8,6:14:99:171,0,287
1    236572475    rs669710    A    G    561.98    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.569;DB;DP=48;Dels=0.0;FS=1.715;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.735;QD=11.71;ReadPosRankSum=-0.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334232    GT:AD:DP:GQ:PL    0/1:26,22:48:99:592,0,850
1    236590629    rs636378    C    T    298.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.45;MQ0=0;MQRankSum=-0.184;QD=19.87;ReadPosRankSum=-1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334232    GT:AD:DP:GQ:PL    0/1:5,10:15:99:328,0,155
1    236590659    rs636048    G    C    506.57    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.56;MQ0=0;MQRankSum=0.222;QD=18.76;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334232    GT:AD:DP:GQ:PL    0/1:11,16:27:99:537,0,366
1    236590816    rs635487    T    G    476.61    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.564;DB;DP=28;Dels=0.0;FS=4.521;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.094;QD=17.02;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334232    GT:AD:DP:GQ:PL    0/1:11,17:28:99:507,0,242
1    236645440    rs603158    C    T    95.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5916;MQ=57.87;MQ0=0;MQRankSum=-1.203;QD=8.7;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334232    GT:AD:DP:GQ:PL    0/1:4,6:11:62.50:126,0,62
1    236645489    rs143242987    G    A    290.86    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.31;ReadPosRankSum=0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334232    GT:AD:DP:GQ:PL    0/1:8,11:19:99:321,0,230
1    236645670    rs604070    C    T    639.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.168;DB;DP=60;Dels=0.0;FS=2.17;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.147;QD=10.67;ReadPosRankSum=0.671;SNPEFF_AMINO_ACID_CHANGE=D113;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236645567_236648026;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDARADD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359362    GT:AD:DP:GQ:PL    0/1:36,24:60:99:670,0,1089
1    236689568    rs2251642    A    G    32.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.55;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238181    GT:AD:DP:GQ:PL    0/1:3,2:5:62.75:63,0,112
1    236700807    rs2737713    T    A    366.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=33.3;SNPEFF_AMINO_ACID_CHANGE=F19Y;SNPEFF_CODON_CHANGE=tTt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236700797_236700885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238181    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:399,30,0
1    236700823    rs1041934    T    C    407.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=29.07;SNPEFF_AMINO_ACID_CHANGE=P24;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236700797_236700885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238181    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:440,36,0
1    236700857    rs1041935    C    T    505.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=R36C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236700797_236700885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238181    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:539,39,0
1    236700982    rs2737706    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529489    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    236702117    rs2244809    T    G    362.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=27.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529489    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:395,30,0
1    236702153    rs2244808    G    A    526.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.95;MQ0=0;QD=27.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529489    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:559,42,0
1    236702209    rs1041936    C    T    286.58    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.142;DB;DP=28;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=1.9733;MQ=58.33;MQ0=0;MQRankSum=-0.088;QD=10.24;ReadPosRankSum=-0.029;SNPEFF_AMINO_ACID_CHANGE=S55;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236702179_236702389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238181    GT:AD:DP:GQ:PL    0/1:10,18:28:99:317,0,284
1    236702210    rs1041937    A    G    689.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9733;MQ=58.45;MQ0=0;QD=22.99;SNPEFF_AMINO_ACID_CHANGE=M56V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236702179_236702389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238181    GT:AD:DP:GQ:PL    1/1:0,29:30:63.15:723,63,0
1    236702374    rs2472126    G    C    339.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=15.42;SNPEFF_AMINO_ACID_CHANGE=L110;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236702179_236702389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238181    GT:AD:DP:GQ:PL    1/1:0,11:22:27.09:372,27,0
1    236702447    rs12744425    T    G    300.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.81;MQ0=0;QD=27.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,11:11:30.06:334,30,0
1    236702450    rs12744427    T    C    227.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.15;MQ0=0;QD=22.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:261,21,0
1    236702475    rs11807205    A    G    125.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
1    236703687    rs2799413    T    C    192.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:226,18,0
1    236703700    rs2244659    A    G    129.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
1    236703734    rs2243405    T    C    364.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:397,30,0
1    236703767    rs2758994    C    T    905.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:938,69,0
1    236703832    rs3216037    CG    C    1369.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=8;HaplotypeScore=297.2447;IndelType=D;MQ=59.55;MQ0=0;QD=24.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:7,50:57:99:1412,147,0
1    236704813    rs2758169    A    C    67.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=22.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
1    236704825    rs2853611    G    A    35.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=11.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
1    236704888    rs144376212    ATAT    A    228.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=116.2;IndelType=D;MQ=29.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:270,18,0
1    236704894    .    A    AGGTT    567.70    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=134.5624;IndelType=I;MQ=33.88;MQ0=0;QD=63.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481485    GT:AD:DP:GQ:PL    1/1:3,6:9:24.08:610,24,0
1    236706352    rs2758174    A    C    1754.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406509    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1788,138,0
1    236706371    rs2758175    A    G    1388.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406509    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1421,108,0
1    236706425    rs2244267    G    A    560.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406509    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:594,45,0
1    236706467    rs2244261    C    T    290.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406509    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
1    236706671    rs2243530    T    A    478    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406509    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:511,39,0
1    236706780    rs2243527    C    T    1581.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=34.37;SNPEFF_AMINO_ACID_CHANGE=R201C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236706729_236706806;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356238    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1614,117,0
1    236706862    rs2243525    G    C    1618.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=28.39;SNPEFF_AMINO_ACID_CHANGE=R125S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236706860_236706948;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238181    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1651,126,0
1    236707007    rs2799410    C    T    255.47    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.495;QD=18.25;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366583    GT:AD:DP:GQ:PL    0/1:4,10:14:78.61:285,0,79
1    236707036    rs2794786    A    T    397.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366583    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:431,33,0
1    236707045    rs2799409    C    T    259.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366583    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:292,24,0
1    236707816    rs1124907    C    T    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366582    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    236708022    rs5781896    GT    G    1899.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;FS=0.0;HRun=11;HaplotypeScore=418.6095;IndelType=D;MQ=60.09;MQ0=0;QD=21.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366582    GT:AD:DP:GQ:PL    1/1:8,79:87:99:1942,239,0
1    236708037    rs112790242    T    C    1284.80    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.523;DB;DP=102;Dels=0.0;FS=1.608;HRun=1;HaplotypeScore=1.933;MQ=59.85;MQ0=0;MQRankSum=-0.967;QD=12.6;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366582    GT:AD:DP:GQ:PL    0/1:50,52:102:99:1315,0,1459
1    236708224    rs2244063    A    C    1302.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366582    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1335,99,0
1    236708316    rs2758181    A    G    181.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.37;MQ0=0;QD=30.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366582    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:214,18,0
1    236708318    rs12092255    T    C    98.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.37;MQ0=0;MQRankSum=-0.72;QD=16.46;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366582    GT:AD:DP:GQ:PL    0/1:2,4:6:58.03:129,0,58
1    236708357    rs60495052    C    CCCTT    335.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=36.0748;IndelType=I;MQ=46.95;MQ0=0;QD=67.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366582    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:378,15,0
1    236711174    rs34118124    T    TCA    295.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=20.7936;IndelType=I;MQ=60.0;MQ0=0;QD=42.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:337,18,0
1    236711297    rs2254823    A    T    1443.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1476,108,0
1    236711323    rs15701    T    C    1446.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.87;SNPEFF_AMINO_ACID_CHANGE=Y245;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236711312_236712302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1479,108,0
1    236711586    rs1160    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    236714064    rs6989    A    C    316.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=35.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:349,27,0
1    236714292    rs71850332    T    TTA    118.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.113;DB;DP=34;FS=28.709;HRun=0;HaplotypeScore=393.8367;IndelType=I;MQ=45.08;MQ0=0;MQRankSum=-1.39;QD=3.48;ReadPosRankSum=-4.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    0/1:16,1:34:99:157,0,285
1    236714335    rs2254487    C    T    122    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.065;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=42.04;MQ0=0;MQRankSum=0.352;QD=6.1;ReadPosRankSum=1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    0/1:9,11:20:15.54:152,0,16
1    236714384    rs2254483    G    A    167.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.02;MQ0=0;QD=23.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:200,15,0
1    236715517    rs3189    T    C    518.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:551,45,0
1    236716686    rs1475133    G    A    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    236716741    rs1475132    G    A    169.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
1    236716959    rs2275685    C    T    1460.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_AMINO_ACID_CHANGE=S1972;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236716881_236717039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1493,108,0
1    236717104    rs2275686    A    G    825.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=39.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323938    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:859,63,0
1    236717926    rs2275687    T    C    1685.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=29.06;SNPEFF_AMINO_ACID_CHANGE=E1936G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236717898_236718052;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1719,132,0
1    236718421    rs6668716    G    C    776.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366584    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:810,57,0
1    236718524    rs6668848    G    C    1388.15    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.188;DB;DP=89;Dels=0.0;FS=10.431;HRun=0;HaplotypeScore=1.841;MQ=60.0;MQ0=0;MQRankSum=0.021;QD=15.6;ReadPosRankSum=0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366584    GT:AD:DP:GQ:PL    0/1:42,47:89:99:1418,0,1376
1    236718561    rs6668926    G    A    4238.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366584    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4238,313,0
1    236718620    rs1126627    T    C    4062.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=N1886D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236718596_236718764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,120:120:99:4063,310,0
1    236719135    rs1885532    T    C    2501.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=E1792;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236719105_236719239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:2,70:72:99:2535,199,0
1    236719193    rs1885533    A    G    1584.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=V1773A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236719105_236719239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1617,123,0
1    236719259    rs1885534    G    A    436.25    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=38;Dels=0.0;FS=7.476;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.658;QD=11.48;ReadPosRankSum=-0.745;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366584    GT:AD:DP:GQ:PL    0/1:20,18:38:99:466,0,677
1    236719688    rs1407518    A    G    212.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526589    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
1    236720467    rs56351858    G    A    237.94    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.803;DB;DP=22;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.801;QD=10.82;ReadPosRankSum=-0.401;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526589    GT:AD:DP:GQ:PL    0/1:13,9:22:99:268,0,354
1    236720761    rs2799404    T    C    242.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526589    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
1    236720833    rs2759005    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526589    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    236721341    rs2759006    C    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
1    236721370    rs2759007    G    C    128.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
1    236721610    rs2275688    G    A    1368.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.972;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.92;MQ0=0;MQRankSum=-0.718;QD=31.82;ReadPosRankSum=-1.225;SNPEFF_AMINO_ACID_CHANGE=L1630;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236721537_236721829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:1,42:43:73.72:1401,74,0
1    236721660    rs2275689    T    C    2044.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=N1613S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236721537_236721829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2078,153,0
1    236721731    rs819431    T    C    2045.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=A1589;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236721537_236721829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2078,162,0
1    236722182    rs819432    A    T    445.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:478,36,0
1    236722489    rs2146122    C    T    821.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;QD=30.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:855,66,0
1    236723177    rs10754576    G    A    247.36    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.799;DB;DP=48;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=0.9999;MQ=58.55;MQ0=0;MQRankSum=-0.705;QD=5.15;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:30,18:48:99:277,0,789
1    236723178    rs10754577    C    A    252.83    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=47;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.9999;MQ=58.51;MQ0=0;MQRankSum=-1.282;QD=5.38;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:25,18:47:99:283,0,762
1    236724504    rs1077439    G    A    1539.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1573,126,0
1    236724605    rs1077438    G    T    2315.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2348,172,0
1    236724715    rs1077437    T    G    419.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=38.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
1    236724766    rs1077436    C    T    114.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:147,12,0
1    236728159    rs115298515    G    A    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
1    236729867    rs2758172    C    T    137.06    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=17.13;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:3,5:8:99:167,0,102
1    236735939    rs2853602    T    C    1186.28    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=99;Dels=0.0;FS=14.25;HRun=0;HaplotypeScore=1.4725;MQ=59.77;MQ0=0;MQRankSum=1.312;QD=11.98;ReadPosRankSum=1.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490339    GT:AD:DP:GQ:PL    0/1:58,41:99:99:1216,0,2030
1    236739416    rs2115740    C    T    874.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,25:25:72.20:907,72,0
1    236739866    rs2794773    A    T    294.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:328,27,0
1    236739888    rs2853596    T    A    192.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:225,18,0
1    236740039    rs6658793    G    C    993.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1027,75,0
1    236740451    rs59868927    A    G    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    236744424    rs35257076    A    AT    388.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=9;HaplotypeScore=31.6553;IndelType=I;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:2,11:13:39.11:431,39,0
1    236744712    rs4518892    C    A    2270.23    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=19.3152;MQ=57.62;MQ0=0;QD=27.69;SNPEFF_AMINO_ACID_CHANGE=V855;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236744522_236744714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2303,184,0
1    236744720    rs35716006    T    TA    355.89    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=0.149;DB;DP=68;FS=0.0;HRun=14;HaplotypeScore=578.5789;IndelType=I;MQ=56.93;MQ0=0;MQRankSum=0.636;QD=5.23;ReadPosRankSum=-2.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:41,24:68:99:395,0,265
1    236744854    rs12065886    T    C    233.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:266,21,0
1    236745756    rs2853591    A    G    61.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.54;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:94,9,0
1    236746275    rs2794769    G    C    2318.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2352,175,0
1    236746443    rs2794768    C    T    5886.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=182;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.581;MQ=59.75;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=V765;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236746313_236746496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,182:182:99:5886,433,0
1    236746511    rs16833972    G    A    1303.57    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.834;DB;DP=102;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.545;MQ=59.55;MQ0=0;MQRankSum=-1.224;QD=12.78;ReadPosRankSum=-0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:55,46:102:99:1334,0,1964
1    236748433    rs3738535    G    A    1167.40    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=4.232;DB;DP=63;Dels=0.0;FS=10.337;HRun=1;HaplotypeScore=0.9947;MQ=59.63;MQ0=0;MQRankSum=0.31;QD=18.53;ReadPosRankSum=-1.002;SNPEFF_AMINO_ACID_CHANGE=L711;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236748325_236748516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:22,41:63:99:1197,0,654
1    236748505    rs1006456    T    C    1795.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.56;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=L687;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236748325_236748516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1829,132,0
1    236748630    rs1006455    C    T    113.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:146,12,0
1    236749022    rs10925166    G    A    189.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=17.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,11:11:21.04:223,21,0
1    236749026    rs10925167    T    A    143.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.393;QD=13.05;ReadPosRankSum=1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:1,10:11:18.02:176,18,0
1    236749348    rs2794764    C    T    235.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:268,21,0
1    236749433    rs2799421    A    C    163.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
1    236749451    rs34454872    TA    T    346.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=43.8467;IndelType=D;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:389,30,0
1    236749626    rs3738541    C    T    906.93    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=2.695;DB;DP=75;Dels=0.0;FS=3.313;HRun=0;HaplotypeScore=2.6653;MQ=59.69;MQ0=0;MQRankSum=0.106;QD=12.09;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=T614;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236749541_236749752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:43,32:75:99:937,0,1290
1    236749649    rs2794763    T    C    1267.20    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.44;DB;DP=80;Dels=0.0;FS=1.887;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=15.84;ReadPosRankSum=-1.28;SNPEFF_AMINO_ACID_CHANGE=M607V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236749541_236749752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:33,47:80:99:1297,0,1062
1    236749817    rs2799420    C    T    754.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:788,60,0
1    236755170    rs2794760    G    T    691.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:725,54,0
1    236755427    rs2794759    A    G    793.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:826,66,0
1    236755814    rs2794757    G    A    683.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:716,51,0
1    236755837    rs2564739    C    T    826.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_AMINO_ACID_CHANGE=R430;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236755823_236755933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,27:27:63.21:860,63,0
1    236755937    rs71766566    TA    T    407.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=11;HaplotypeScore=60.497;IndelType=D;MQ=58.99;MQ0=0;QD=17.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    1/1:4,18:23:55.96:449,56,0
1    236757121    rs2794755    G    C    207.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
1    236757200    rs2564738    A    G    577.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:611,45,0
1    236757229    rs2794754    G    A    952.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:985,75,0
1    236757507    rs2794753    A    G    398.95    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=26.6;ReadPosRankSum=-0.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    0/1:3,12:15:75.66:429,0,76
1    236757581    rs16834028    T    A    70.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.14;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:101,0,69
1    236758887    rs2794751    T    C    846.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=H348R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236758840_236758973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:879,66,0
1    236759060    rs2794750    T    C    684.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.78;MQ0=0;QD=36.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483073    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:717,54,0
1    236759964    rs2758163    G    T    126.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
1    236760368    rs2564737    T    C    165.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.893;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.35;QD=7.87;ReadPosRankSum=0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366581    GT:AD:DP:GQ:PL    0/1:12,9:21:99:195,0,429
1    236762657    rs17585293    A    G    66.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366579    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:98,9,0
1    236767176    rs1529541    C    G    214.13    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.9297;MQ=57.53;MQ0=0;MQRankSum=-1.2;QD=11.27;ReadPosRankSum=-1.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366579    GT:AD:DP:GQ:PL    0/1:10,9:19:99:244,0,361
1    236767178    rs5781902    AG    A    551.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=4;HaplotypeScore=149.4016;IndelType=D;MQ=57.66;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366579    GT:AD:DP:GQ:PL    1/1:12,8:20:59.96:594,60,0
1    236767181    .    G    GA    171.40    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.289;DP=22;FS=0.0;HRun=0;HaplotypeScore=200.8196;IndelType=I;MQ=57.87;MQ0=0;MQRankSum=1.514;QD=7.79;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366579    GT:AD:DP:GQ:PL    0/1:12,9:22:15.52:210,0,16
1    236767330    rs10802551    A    G    523.33    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.677;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.081;QD=12.76;ReadPosRankSum=0.542;SNPEFF_AMINO_ACID_CHANGE=S22;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236767254_236767427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366579    GT:AD:DP:GQ:PL    0/1:19,22:41:99:553,0,569
1    236849952    rs138279482    C    T    153.14    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.986;DB;DP=19;Dels=0.0;FS=9.425;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=8.06;ReadPosRankSum=0.718;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492634    GT:AD:DP:GQ:PL    0/1:12,7:19:99:183,0,363
1    236881403    rs2275399    C    T    237.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.91;QD=13.19;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    0/1:10,8:18:99:267,0,346
1    236882110    rs1341865    G    A    497.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:531,42,0
1    236882303    rs1341864    T    C    1103.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.53;MQ0=0;MQRankSum=0.578;QD=27.6;ReadPosRankSum=-1.2;SNPEFF_AMINO_ACID_CHANGE=I117;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236882194_236882313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:1,39:40:90.25:1137,90,0
1    236883240    rs1768053    T    C    36.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
1    236883421    rs1341863    C    T    2405.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=36.44;SNPEFF_AMINO_ACID_CHANGE=N126;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_236883405_236883491;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2438,178,0
1    236883564    rs1341862    G    A    776.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,20:21:60.20:809,60,0
1    236883686    rs1341861    G    T    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    236894647    rs819640    G    A    312.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.895;QD=13.04;ReadPosRankSum=-1.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    0/1:12,12:24:99:343,0,432
1    236902532    rs57403310    ATT    A    595.78    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=0.238;DB;DP=53;FS=0.0;HRun=12;HaplotypeScore=463.7183;IndelType=D;MQ=56.64;MQ0=0;MQRankSum=0.155;QD=11.24;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    0/1:26,25:53:99:635,0,751
1    236902560    rs7527525    C    T    1191.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.6462;MQ=56.62;MQ0=0;QD=14.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,40:84:99:1225,99,0
1    236902594    rs2288601    C    G    3949.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8808;MQ=57.63;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3949,304,0
1    236902865    rs2288602    A    C    394.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,11:12:33.11:428,33,0
1    236902955    rs7544174    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    236910863    rs10802557    T    C    36.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.19;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492634    GT:AD:DP:GQ:PL    0/1:4,3:7:66.35:66,0,145
1    236912286    rs2297956    G    A    335.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492101    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:369,27,0
1    236914576    rs3738544    C    T    79.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.07;MQ0=0;QD=26.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492101    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
1    236914610    rs3738545    G    C    124.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492101    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
1    236924506    rs2282366    A    G    794.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=31.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366578    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:827,63,0
1    236974124    rs4659724    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366577    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    236978992    rs5781924    T    TTCTG    2348.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=108.7196;IndelType=I;MQ=53.12;MQ0=0;QD=69.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366577    GT:AD:DP:GQ:PL    1/1:9,25:34:90.31:2390,90,0
1    236979597    rs3795708    A    G    396.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366577    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:429,33,0
1    236988593    rs67356179    A    AT    1460.29    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.687;DB;DP=81;FS=3.434;HRun=5;HaplotypeScore=180.2351;IndelType=I;MQ=61.32;MQ0=0;MQRankSum=1.312;QD=18.03;ReadPosRankSum=-2.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366577    GT:AD:DP:GQ:PL    0/1:38,43:81:99:1499,0,825
1    236989891    rs1856769    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366577    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    237001926    rs3820568    A    G    976.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,25:26:75.24:1009,75,0
1    237002032    rs55748381    A    C    186.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:220,18,0
1    237013914    rs35913043    CTGA    C    490.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=50.5411;IndelType=D;MQ=54.82;MQ0=0;QD=40.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:1,11:12:33.11:533,33,0
1    237015628    rs2275568    C    T    155.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:188,15,0
1    237023333    rs10925254    T    C    337.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:370,30,0
1    237023394    rs45534439    A    G    53.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=13.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:86,9,0
1    237024414    .    G    T    174.41    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.031;DP=26;Dels=0.0;FS=8.113;HRun=16;HaplotypeScore=4.1753;MQ=44.81;MQ0=0;MQRankSum=-2.419;QD=6.71;ReadPosRankSum=2.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    0/1:8,18:26:99:204,0,210
1    237037998    rs150727404    CTT    C    645.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=10;HaplotypeScore=127.5453;IndelType=D;MQ=60.26;MQ0=0;QD=28.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:3,13:22:63.15:687,63,0
1    237048562    rs2275566    G    A    504.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:538,39,0
1    237049453    rs41295948    C    T    63.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.56;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    0/1:3,3:6:93.33:93,0,108
1    237052792    rs3768150    T    A    241.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
1    237054569    rs2229276    A    G    2166.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=A1048;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237054433_237054629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366577    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2199,172,0
1    237057608    rs2297965    G    A    936.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=58.5;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,28:28:72.21:969,72,0
1    237058744    rs12070777    C    A    220.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=R1018;SNPEFF_CODON_CHANGE=cgC/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237058658_237058850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417743    GT:AD:DP:GQ:PL    1/1:0,7:7:21.03:253,21,0
1    237058828    rs1131449    C    T    114.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.71;SNPEFF_AMINO_ACID_CHANGE=L1046;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237058658_237058850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417743    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:147,12,0
1    237060433    rs3820571    G    T    2876.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366576    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2910,220,0
1    237061056    rs2853522    A    C    389.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417743    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:422,33,0
1    237167704    rs190219393    C    T    334.35    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=3.755;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.416;QD=9.04;ReadPosRankSum=-1.647;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL359259.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464121    GT:AD:DP:GQ:PL    0/1:23,14:37:99:364,0,673
1    237434181    rs7526874    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    237504708    rs2787102    A    G    40.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:71,0,32
1    237504759    rs10925374    T    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    237516073    rs10802607    T    C    497.01    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=23.67;ReadPosRankSum=-1.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:6,15:21:99:527,0,183
1    237519137    rs10802608    T    A    280.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.77;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.059;QD=18.73;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:6,9:15:99:311,0,199
1    237519165    rs10925382    G    T    315.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.248;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.116;QD=14.36;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:11,11:22:99:346,0,371
1    237540615    rs10925391    A    C    2507    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2540,184,0
1    237551241    rs71561868    G    GTC    398.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=17.9716;IndelType=I;MQ=60.0;MQ0=0;QD=49.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:440,24,0
1    237551376    rs10754602    T    A    1292.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1325,105,0
1    237580606    rs6673182    G    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:123,9,0
1    237580612    rs6673187    G    C    79.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
1    237586196    rs16835235    C    T    68.39    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.758;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.495;QD=4.88;ReadPosRankSum=-1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:10,4:14:98.38:98,0,376
1    237586384    rs16835237    T    C    2657.43    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=179;Dels=0.0;FS=2.88;HRun=0;HaplotypeScore=2.7258;MQ=59.27;MQ0=0;MQRankSum=0.664;QD=14.85;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:81,98:179:99:2687,0,2432
1    237617757    rs3765097    C    T    6298.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=S437;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237617691_237617874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542537    GT:AD:DP:GQ:PL    1/1:0,187:187:99:6299,475,0
1    237618034    rs4142933    G    A    240.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
1    237619875    rs71758778    A    AT    1766.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.876;DB;DP=120;FS=0.0;HRun=14;HaplotypeScore=677.2774;IndelType=I;MQ=56.75;MQ0=0;MQRankSum=0.303;QD=14.72;ReadPosRankSum=0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:24,91:120:99:1809,127,0
1    237620049    rs2045955    T    C    4341.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.7;MQ0=0;MQRankSum=0.433;QD=32.64;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:1,131:133:99:4341,288,0
1    237632285    rs35662567    A    AT    1530.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=60.9802;IndelType=I;MQ=58.93;MQ0=0;QD=46.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1572,99,0
1    237632595    rs71561877    T    TGTG    1330.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=178.0345;IndelType=I;MQ=43.23;MQ0=0;QD=55.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:3,21:24:66.23:1373,66,0
1    237632670    rs10925426    C    T    236.43    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.65;MQ0=0;MQRankSum=-0.747;QD=29.55;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:1,7:8:15.93:266,0,16
1    237670140    rs2618702    A    G    3046.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5226;MQ=59.74;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3079,232,0
1    237675150    rs57409517    A    AG    628.06    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.46;DB;DP=49;FS=9.003;HRun=0;HaplotypeScore=405.0606;IndelType=I;MQ=49.59;MQ0=0;MQRankSum=3.546;QD=12.82;ReadPosRankSum=1.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:32,16:49:99:667,0,419
1    237675150    rs57830998    A    G    126.59    HaplotypeScoreFilter13    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.216;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=22.9621;MQ=49.35;MQ0=0;MQRankSum=1.434;QD=2.64;ReadPosRankSum=-0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:38,10:48:99:157,0,544
1    237675163    rs67622164    G    A    149.02    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=50.55;MQ0=0;MQRankSum=-3.013;QD=4.26;ReadPosRankSum=-0.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:22,13:35:99:179,0,690
1    237675255    rs2618651    T    C    328.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:362,27,0
1    237693471    rs2805447    T    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.14;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    237693479    rs2779364    C    T    41.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.14;MQ0=0;QD=20.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
1    237693921    rs2779365    A    G    59.73    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=5.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:8,3:11:89.73:90,0,295
1    237711644    rs2618661    T    C    587.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=39.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:621,45,0
1    237711797    rs2253273    A    G    2960.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7853;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=S975;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237711731_237711890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542537    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2993,235,0
1    237729774    rs2248295    G    A    376.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
1    237730124    rs2805390    A    G    2288.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2321,175,0
1    237730169    rs2779401    C    T    1173.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,33:34:99:1207,99,0
1    237732332    rs2618717    C    T    143.71    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=17.96;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:2,6:8:64.58:174,0,65
1    237732395    rs2805396    G    A    232.53    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=13.68;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:7,10:17:99:263,0,171
1    237755348    rs2779431    T    C    249.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
1    237788844    rs571092    T    C    1032.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1066,81,0
1    237788862    rs571026    T    C    1255.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,34:34:96.30:1289,96,0
1    237789317    rs512336    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    237794603    rs1759123    A    G    874.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:907,72,0
1    237794989    rs35464404    A    AG    375.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=135.1781;IndelType=I;MQ=33.04;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:417,30,0
1    237796759    rs10925478    G    C    1272.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1305,93,0
1    237796837    rs10802626    G    A    3155.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3188,235,0
1    237797082    rs1967579    T    G    799.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:832,69,0
1    237797103    rs1967580    C    A    720.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:753,57,0
1    237798041    rs112686794    T    TA    327.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=22.1117;IndelType=I;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:370,27,0
1    237798450    rs3736543    G    A    920.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:954,72,0
1    237801770    rs707189    T    C    8296.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=233;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.787;MQ=59.7;MQ0=0;QD=35.61;SNPEFF_AMINO_ACID_CHANGE=L2286;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237801657_237801792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542537    GT:AD:DP:GQ:PL    1/1:1,232:233:99:8296,608,0
1    237802176    rs505489    A    C    77.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
1    237802559    rs530109    T    C    1063.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1096,81,0
1    237806819    rs11583646    G    A    1367.50    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=88;Dels=0.0;FS=3.634;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.075;QD=15.54;ReadPosRankSum=1.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:45,43:88:99:1397,0,1363
1    237813030    rs487056    C    T    585.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:619,48,0
1    237813126    rs625006    A    G    3547.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3548,262,0
1    237814783    rs684923    C    T    1269.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_AMINO_ACID_CHANGE=H2586;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237814711_237814801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542537    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1302,93,0
1    237814898    rs2184014    C    A    163.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
1    237817514    rs71734717    GA    G    707.35    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=6.429;DB;DP=70;FS=0.0;HRun=9;HaplotypeScore=196.0088;IndelType=D;MQ=59.66;MQ0=0;MQRankSum=0.106;QD=10.11;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:37,33:70:99:746,0,783
1    237817784    rs669375    A    G    554.69    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=-0.718;QD=12.61;ReadPosRankSum=-0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:23,21:44:99:585,0,829
1    237819431    rs589806    C    T    101.82    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.87;MQ0=0;MQRankSum=0.466;QD=9.26;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:6,5:11:99:132,0,147
1    237823476    rs1342834    A    G    204.09    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=20.41;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:3,7:10:75.60:234,0,76
1    237823959    rs475234    C    T    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
1    237824332    rs471647    G    A    1037.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1071,84,0
1    237831103    rs477245    C    A    336.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:369,27,0
1    237841390    rs34967813    A    G    333.53    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=38;Dels=0.0;FS=2.932;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.47;QD=8.78;ReadPosRankSum=-0.44;SNPEFF_AMINO_ACID_CHANGE=Q2942R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237841348_237841412;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542537    GT:AD:DP:GQ:PL    0/1:21,17:38:99:364,0,696
1    237862164    rs1521745    G    C    136.61    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=60.0;MQ0=0;MQRankSum=-2.8;QD=9.76;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:9,5:14:99:167,0,321
1    237863439    rs12754190    G    A    191.82    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=58.63;MQ0=0;MQRankSum=1.395;QD=11.28;ReadPosRankSum=-1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:9,8:17:99:222,0,293
1    237863718    rs2797436    T    G    2969.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;QD=29.4;SNPEFF_AMINO_ACID_CHANGE=S101;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237863529_237863767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540213    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3002,241,0
1    237865203    rs939699    C    T    1667.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1701,126,0
1    237872714    rs35261418    GT    G    340.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=12;HaplotypeScore=131.62;IndelType=D;MQ=57.91;MQ0=0;QD=14.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:4,17:23:51.88:383,52,0
1    237881770    rs2797441    C    T    2980.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=T3485;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237881762_237881821;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542537    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3014,217,0
1    237881944    .    A    G    91.50    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.33;MQ0=0;MQRankSum=-0.354;QD=6.54;ReadPosRankSum=-1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:10,4:14:99:121,0,366
1    237886739    rs2797444    C    T    240.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:273,21,0
1    237890437    rs2685301    C    T    5841.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8561;MQ=59.61;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=S3576;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_237890387_237890499;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542537    GT:AD:DP:GQ:PL    1/1:0,175:176:99:5841,427,0
1    237893674    rs2797445    C    T    2402.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2435,181,0
1    237905568    rs35446101    T    TC    1281.79    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.782;DB;DP=77;FS=5.864;HRun=2;HaplotypeScore=625.4141;IndelType=I;MQ=55.98;MQ0=0;MQRankSum=-0.261;QD=16.65;ReadPosRankSum=0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:48,29:77:99:1321,0,773
1    237923053    rs2253831    C    T    1272.70    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.315;DB;DP=99;Dels=0.0;FS=2.955;HRun=0;HaplotypeScore=3.6007;MQ=59.3;MQ0=0;MQRankSum=-0.778;QD=12.86;ReadPosRankSum=-0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:52,46:99:99:1303,0,1568
1    237946964    rs790889    T    C    1211.05    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.091;DB;DP=72;Dels=0.0;FS=6.528;HRun=1;HaplotypeScore=1.9829;MQ=58.81;MQ0=0;MQRankSum=-0.844;QD=16.82;ReadPosRankSum=0.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1241,0,1012
1    237949020    rs11370997    T    TG    485.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=24.2483;IndelType=I;MQ=60.98;MQ0=0;QD=44.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:528,33,0
1    237951451    rs2256242    A    G    1806.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542288    GT:AD:DP:GQ:PL    1/1:1,50:51:99:1839,135,0
1    237951482    rs16835818    G    A    420.68    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.315;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.955;QD=12.75;ReadPosRankSum=-0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542288    GT:AD:DP:GQ:PL    0/1:17,16:33:99:451,0,523
1    237955649    rs10642783    CTGTGTGTG    C    657.88    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.94;DB;DP=65;FS=2.618;HRun=0;HaplotypeScore=559.2154;IndelType=D;MQ=57.02;MQ0=0;MQRankSum=0.755;QD=10.12;ReadPosRankSum=-0.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542288    GT:AD:DP:GQ:PL    0/1:42,14:65:99:697,0,962
1    237993724    rs2275692    C    T    554.30    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.354;QD=14.21;ReadPosRankSum=0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:22,17:39:99:584,0,755
1    237995671    rs12025731    A    G    82.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
1    237996076    rs16835891    C    G    309.62    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=1.393;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.393;QD=30.96;ReadPosRankSum=-1.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360064    GT:AD:DP:GQ:PL    0/1:1,9:10:6.03:339,0,6
1    238045590    rs2794813    C    T    71.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.88;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366570    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,108
1    238046253    rs2794814    T    C    94.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.53;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540213    GT:AD:DP:GQ:PL    0/1:4,5:9:99:125,0,103
1    238051933    rs2236595    C    T    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.79;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540213    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,106
1    238053524    rs538499    T    C    219.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.079;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=10.97;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540213    GT:AD:DP:GQ:PL    0/1:10,10:20:99:249,0,313
1    240070603    rs3738435    T    C    149.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.62;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHRM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255380    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,138
1    240254874    rs7521945    T    C    120.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447095    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
1    240256822    rs10926124    C    A    153.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=10.95;ReadPosRankSum=-2.001;SNPEFF_AMINO_ACID_CHANGE=A471;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240255180_240257024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:8,6:14:99:183,0,246
1    240286773    rs3820506    C    G    73.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.63;MQ0=0;MQRankSum=-1.38;QD=8.2;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:4,5:9:69.83:104,0,70
1    240305899    rs12746598    C    T    1241.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.444;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=34.47;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:1,35:36:63.10:1274,63,0
1    240351628    rs4659948    T    C    796.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:829,63,0
1    240370629    rs10926166    C    G    1310.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=29.12;SNPEFF_AMINO_ACID_CHANGE=T839;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1343,111,0
1    240371031    rs140720010    A    G    258.52    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=35.88;MQ0=0;QD=18.47;SNPEFF_AMINO_ACID_CHANGE=A973;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:0,13:14:27.05:292,27,0
1    240371034    rs150102515    A    C    229.20    MQFilter40;SnpCluster    AB=0.067;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.992;DB;DP=15;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.9578;MQ=34.67;MQ0=1;MQRankSum=-0.496;QD=15.28;ReadPosRankSum=1.24;SNPEFF_AMINO_ACID_CHANGE=G974;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:1,14:15:3.41:258,0,3
1    240371040    .    T    C    95.70    MQFilter40;SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DP=12;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.9578;MQ=23.85;MQ0=1;MQRankSum=0.48;QD=7.97;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=P976;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:4,8:12:15.44:126,0,15
1    240371046    .    A    T    91.70    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DP=12;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=23.3;MQ0=1;MQRankSum=0.296;QD=7.64;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=P978;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:4,7:12:40.10:122,0,40
1    240371055    .    A    T    63.21    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DP=11;Dels=0.0;FS=10.0;HRun=1;HaplotypeScore=0.0;MQ=22.76;MQ0=1;MQRankSum=-0.55;QD=5.75;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L981;SNPEFF_CODON_CHANGE=ctA/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:6,5:11:66.76:93,0,67
1    240371085    rs71646826    A    T    43.25    MQFilter40    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=18;Dels=0.0;FS=14.771;HRun=0;HaplotypeScore=4.8869;MQ=27.72;MQ0=1;MQRankSum=1.467;QD=2.4;ReadPosRankSum=-0.267;SNPEFF_AMINO_ACID_CHANGE=P991;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:13,5:18:73.24:73,0,167
1    240371094    .    A    G    31.34    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DP=21;Dels=0.0;FS=21.553;HRun=2;HaplotypeScore=4.8869;MQ=27.23;MQ0=2;MQRankSum=1.152;QD=1.49;ReadPosRankSum=-0.667;SNPEFF_AMINO_ACID_CHANGE=G994;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:16,4:21:61.33:61,0,254
1    240371097    rs71646827    G    A    31.23    MQFilter40;QDFilter2    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.743;DB;DP=25;Dels=0.0;FS=21.182;HRun=0;HaplotypeScore=2.9945;MQ=27.36;MQ0=2;MQRankSum=1.823;QD=1.25;ReadPosRankSum=-1.347;SNPEFF_AMINO_ACID_CHANGE=A995;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:17,7:25:61.22:61,0,263
1    240371112    rs71646889    G    T    31.30    MQFilter40;QDFilter2    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=33;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=8.1081;MQ=26.15;MQ0=4;MQRankSum=2.098;QD=0.95;ReadPosRankSum=-0.549;SNPEFF_AMINO_ACID_CHANGE=P1000;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:21,11:33:61.29:61,0,228
1    240371118    rs71646890    A    T    88.22    MQFilter40    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=35;Dels=0.03;FS=23.314;HRun=0;HaplotypeScore=9.0746;MQ=25.32;MQ0=5;MQRankSum=0.876;QD=2.45;ReadPosRankSum=-0.247;SNPEFF_AMINO_ACID_CHANGE=P1002;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:22,12:35:99:118,0,222
1    240371166    .    C    A    84.63    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.216;DP=49;Dels=0.0;FS=12.602;HRun=1;HaplotypeScore=0.8321;MQ=26.0;MQ0=6;MQRankSum=0.53;QD=1.73;ReadPosRankSum=0.962;SNPEFF_AMINO_ACID_CHANGE=G1018;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:40,8:49:99:115,0,523
1    240371211    .    G    T    57.65    MQFilter40;QDFilter2    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DP=36;Dels=0.0;FS=9.944;HRun=0;HaplotypeScore=10.5764;MQ=31.52;MQ0=4;MQRankSum=-2.972;QD=1.6;ReadPosRankSum=0.917;SNPEFF_AMINO_ACID_CHANGE=P1033;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:23,8:36:87.64:88,0,396
1    240371223    .    C    T    324.25    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DP=33;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=5.7954;MQ=33.13;MQ0=2;MQRankSum=1.599;QD=9.83;ReadPosRankSum=1.364;SNPEFF_AMINO_ACID_CHANGE=P1037;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:15,18:33:99:354,0,190
1    240371328    rs71646895    G    A    438.54    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.434;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4698;MQ=32.34;MQ0=4;MQRankSum=3.107;QD=14.62;ReadPosRankSum=1.57;SNPEFF_AMINO_ACID_CHANGE=A1072;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:7,21:30:19.94:469,0,20
1    240371554    rs12732924    A    G    416.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8305;MQ=34.09;MQ0=2;QD=21.9;SNPEFF_AMINO_ACID_CHANGE=R1148G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240370099_240372032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:0,18:19:39.10:449,39,0
1    240601269    rs2356386    A    G    643.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:0,21:21:60.13:676,60,0
1    240601632    rs2356387    A    G    123.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=10.26;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    0/1:6,6:12:99:153,0,214
1    240601686    rs9700311    C    G    297.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
1    240601714    rs12217144    G    A    133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
1    240635491    rs2210861    G    C    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319653    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
1    240656550    rs142343894    G    C    567.38    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=45;Dels=0.0;FS=2.799;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.61;ReadPosRankSum=-1.061;SNPEFF_AMINO_ACID_CHANGE=Q76E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_240652873_240656776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318160    GT:AD:DP:GQ:PL    0/1:21,24:45:99:597,0,600
1    240962372    rs3932692    G    T    294.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401882    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
1    240975213    rs2275742    T    C    319.81    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.306;DB;DP=42;Dels=0.0;FS=4.995;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=1.415;QD=7.61;ReadPosRankSum=-0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331110    GT:AD:DP:GQ:PL    0/1:29,13:42:99:350,0,1050
1    240975435    rs2275744    C    T    274.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.589;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.107;QD=13.08;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331110    GT:AD:DP:GQ:PL    0/1:12,9:21:99:305,0,360
1    240975611    rs7537530    C    G    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331110    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
1    240977964    rs12744536    G    T    907.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331110    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:941,69,0
1    240979803    rs3738068    G    A    550.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=39.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331110    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:584,42,0
1    241100122    rs261857    G    T    75.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.81;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331110    GT:AD:DP:GQ:PL    0/1:4,3:7:96.19:106,0,96
1    241146322    rs7520707    A    G    342.59    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.434;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=20.15;ReadPosRankSum=-1.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331110    GT:AD:DP:GQ:PL    0/1:4,13:17:87.40:373,0,87
1    241519098    rs4659599    T    A    1720.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348120    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1753,135,0
1    241663902    rs59736583    T    TGAGA    1603.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DB;DP=70;FS=0.0;HRun=0;HaplotypeScore=388.9267;IndelType=I;MQ=55.06;MQ0=0;MQRankSum=-0.533;QD=21.97;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366560    GT:AD:DP:GQ:PL    1/1:41,23:70:26.22:1645,26,0
1    241667244    rs4659607    G    T    211.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366560    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
1    241712134    rs12410855    C    T    731.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=G20;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_241712129_241712198;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KMO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366557    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:765,57,0
1    241712767    rs9428882    C    T    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366557    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
1    241729614    rs10754731    T    G    683.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.39;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480967    GT:AD:DP:GQ:PL    1/1:0,20:20:60.16:716,60,0
1    241729687    rs140702304    AAGCTCCCTGGTCAC    A    3344.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=518.4651;IndelType=D;MQ=38.27;MQ0=0;QD=90.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480967    GT:AD:DP:GQ:PL    1/1:7,30:37:90.31:3345,90,0
1    241750285    rs685722    T    A    274.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431245    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
1    241755348    rs1053230    C    T    1983.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=R418C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_241755255_241758944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KMO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366557    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2016,150,0
1    241761349    rs45572340    T    C    554.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366557    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:588,45,0
1    241767930    rs632966    G    A    703.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331838    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:737,54,0
1    241816142    rs7537781    T    G    186.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:219,18,0
1    241816163    rs6429283    G    T    170.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
1    241834679    rs6663921    T    G    81.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
1    241838057    rs67170285    C    T    707.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=29.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:741,60,0
1    241838065    rs66585415    T    C    685.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:719,57,0
1    241847018    rs10802979    C    T    1342.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461971    GT:AD:DP:GQ:PL    1/1:0,37:38:99:1376,102,0
1    241907548    rs7418198    A    C    432.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:465,39,0
1    241912674    rs6669629    A    C    287.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
1    241913062    rs111415778    C    CT    1132.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=33;FS=0.0;HRun=5;HaplotypeScore=66.4304;IndelType=I;MQ=61.26;MQ0=0;MQRankSum=1.3;QD=34.3;ReadPosRankSum=-1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:2,30:33:64.36:1174,64,0
1    241913224    rs10926563    G    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    241932567    rs56396922    C    G    199.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=24.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:233,18,0
1    241933876    rs11809239    A    G    384.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:417,33,0
1    241946766    rs953597    A    C    323.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=26.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:356,30,0
1    241954005    rs35435449    TA    T    244.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=18;HaplotypeScore=321.1293;IndelType=D;MQ=56.91;MQ0=0;QD=4.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478331    GT:AD:DP:GQ:PL    1/1:14,28:52:59.19:287,59,0
1    241954191    rs10802993    A    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478331    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    241964559    rs4658661    C    T    1935.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=35.84;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366552    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1968,144,0
1    242013592    rs2286014    A    AC    326.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=37.1648;IndelType=I;MQ=60.86;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:1,10:11:33.05:369,33,0
1    242015820    rs2526704    A    G    1436.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519225    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1469,108,0
1    242017009    rs1635515    A    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450748    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    242020495    rs2995544    C    T    1603.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=39.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450748    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1636,120,0
1    242022130    rs2526699    T    C    91.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423131    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
1    242030151    rs735943    A    G    1383.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_AMINO_ACID_CHANGE=H354R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_242030132_242030357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1417,114,0
1    242035438    rs4149965    G    A    1061.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=59.25;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=V458M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_242035334_242035580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1094,81,0
1    242035722    rs851780    G    A    130.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=21.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:0,5:6:12.04:163,12,0
1    242041933    rs1776147    A    G    74.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=24.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:106,9,0
1    242042545    rs1776148    A    G    465.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=30;Dels=0.0;FS=12.187;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.503;QD=15.53;ReadPosRankSum=0.402;SNPEFF_AMINO_ACID_CHANGE=E670G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_242042051_242042645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    0/1:12,18:30:99:496,0,380
1    242042690    rs1418760    A    G    137.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:170,15,0
1    242045275    rs1635498    C    T    2036.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=R723C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_242045218_242045319;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2070,150,0
1    242048514    rs71570909    G    GTAAA    280.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=24.6722;IndelType=I;MQ=52.62;MQ0=0;QD=56.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:322,15,0
1    242048674    rs9350    C    T    230.97    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.108;DB;DP=29;Dels=0.0;FS=5.724;HRun=1;HaplotypeScore=0.8321;MQ=59.2;MQ0=0;MQRankSum=-0.485;QD=7.96;ReadPosRankSum=-0.216;SNPEFF_AMINO_ACID_CHANGE=P757L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_242048616_242048809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    0/1:20,9:29:99:261,0,631
1    242052621    rs4150018    T    G    312.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:345,30,0
1    242052685    rs4150020    C    G    271.63    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.346;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=10.45;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348581    GT:AD:DP:GQ:PL    0/1:14,12:26:99:302,0,501
1    242053042    rs851797    A    G    210.34    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.19;MQ0=0;MQRankSum=-0.762;QD=23.37;ReadPosRankSum=0.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518741    GT:AD:DP:GQ:PL    0/1:2,7:9:56.40:240,0,56
1    242161679    rs28408563    G    A    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1LC3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357246    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
1    242253024    rs7523793    T    C    384.98    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.771;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=14.26;ReadPosRankSum=0.412;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314833    GT:AD:DP:GQ:PL    0/1:13,14:27:99:415,0,454
1    242270758    rs7412254    T    C    130.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=57.66;MQ0=0;MQRankSum=0.103;QD=13.07;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427495    GT:AD:DP:GQ:PL    0/1:5,5:10:99:161,0,161
1    242270805    rs34191588    T    TCTC    661.10    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.606;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=106.3445;IndelType=I;MQ=54.87;MQ0=0;MQRankSum=-0.087;QD=26.44;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427495    GT:AD:DP:GQ:PL    0/1:14,10:25:99:700,0,537
1    242271323    rs4658619    T    G    81.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=20.37;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427495    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:111,0,29
1    242383170    rs5782230    T    TAC    613.40    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=2.571;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=103.9204;IndelType=I;MQ=60.47;MQ0=0;MQRankSum=-0.398;QD=26.67;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427495    GT:AD:DP:GQ:PL    0/1:9,14:23:99:652,0,281
1    242383201    rs1973498    T    G    453.85    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=31;Dels=0.0;FS=5.722;HRun=0;HaplotypeScore=0.8667;MQ=60.35;MQ0=0;MQRankSum=0.58;QD=14.64;ReadPosRankSum=-0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427495    GT:AD:DP:GQ:PL    0/1:13,18:31:99:484,0,376
1    242383510    rs7547029    T    C    111.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.93;ReadPosRankSum=2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427495    GT:AD:DP:GQ:PL    0/1:4,4:8:99:141,0,103
1    242451428    rs56040601    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    242511556    rs112478548    AACAAAG    A    2060.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=242.7111;IndelType=D;MQ=35.02;MQ0=0;QD=58.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427495    GT:AD:DP:GQ:PL    1/1:2,33:34:96.32:2103,96,0
1    243217059    .    T    A    124.05    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.55;MQ0=1;MQRankSum=2.166;QD=11.28;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-261C10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399073    GT:AD:DP:GQ:PL    0/1:4,7:11:38.07:154,0,38
1    243217374    rs78598994    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.65;MQ0=1;QD=7.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-261C10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399073    GT:AD:DP:GQ:PL    1/1:1,4:5:6.02:67,6,0
1    243217395    rs71537323    A    G    101.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.68;MQ0=0;QD=20.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-261C10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399073    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:134,12,0
1    243217640    rs9659520    C    T    165.46    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.86;MQ0=0;MQRankSum=0.412;QD=10.34;ReadPosRankSum=-0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-261C10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399073    GT:AD:DP:GQ:PL    0/1:7,9:16:99:195,0,173
1    243328887    .    G    T    170.41    QDFilter2    AB=0.887;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.973;DP=203;Dels=0.0;FS=54.138;HRun=1;HaplotypeScore=4.1263;MQ=40.54;MQ0=1;MQRankSum=-0.563;QD=0.84;ReadPosRankSum=1.352;SNPEFF_AMINO_ACID_CHANGE=S694*;SNPEFF_CODON_CHANGE=tCa/tAa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_243327586_243329418;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP170;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000366543    GT:AD:DP:GQ:PL    0/1:180,23:203:99:200,0,4801
1    243329049    rs3766664    G    A    1243.52    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=3.929;DB;DP=237;DS;Dels=0.0;FS=2.677;HRun=2;HaplotypeScore=2.9968;MQ=49.08;MQ0=2;MQRankSum=-3.963;QD=5.25;ReadPosRankSum=1.96;SNPEFF_AMINO_ACID_CHANGE=T640I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_243327586_243329418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP170;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366543    GT:AD:DP:GQ:PL    0/1:180,57:237:99:1274,0,5680
1    243329075    rs61833876    T    C    589.36    PASS    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.856;DB;DP=250;DS;Dels=0.0;FS=17.236;HRun=1;HaplotypeScore=1.7234;MQ=49.0;MQ0=3;MQRankSum=-4.253;QD=2.36;ReadPosRankSum=-0.142;SNPEFF_AMINO_ACID_CHANGE=K631;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_243327586_243329418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP170;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366543    GT:AD:DP:GQ:PL    0/1:200,49:250:99:619,0,6389
1    243332884    rs140816120    AAG    A    313.81    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=3.33;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=69.8126;IndelType=D;MQ=19.21;MQ0=12;MQRankSum=2.473;QD=5.6;ReadPosRankSum=-0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521911    GT:AD:DP:GQ:PL    0/1:36,20:22:99:353,0,570
1    243362146    rs185179297    C    T    30.56    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=24.4;MQ0=2;MQRankSum=0.736;QD=6.11;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522191    GT:AD:DP:GQ:PL    0/1:3,2:5:24.41:61,0,24
1    243362331    rs2789172    C    T    572.49    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.487;DB;DP=145;Dels=0.0;FS=33.966;HRun=2;HaplotypeScore=1.8737;MQ=43.03;MQ0=22;MQRankSum=-8.458;QD=3.95;ReadPosRankSum=0.802;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522191    GT:AD:DP:GQ:PL    0/1:82,63:145:99:602,0,2722
1    243385307    rs6662118    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366542    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    243388370    rs10926973    A    T    246.86    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.782;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.782;QD=7.96;ReadPosRankSum=1.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366542    GT:AD:DP:GQ:PL    0/1:21,10:31:99:277,0,760
1    243493888    rs74701277    C    G    169.83    FSFilter60    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.767;DB;DP=75;Dels=0.0;FS=95.919;HRun=2;HaplotypeScore=0.9983;MQ=49.22;MQ0=0;MQRankSum=-4.53;QD=2.26;ReadPosRankSum=-0.601;SNPEFF_AMINO_ACID_CHANGE=A152G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_243493842_243493994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435549    GT:AD:DP:GQ:PL    0/1:45,30:75:99:200,0,1080
1    243493907    rs2275155    A    T    726.71    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.134;DB;DP=75;Dels=0.0;FS=7.513;HRun=0;HaplotypeScore=2.8995;MQ=49.22;MQ0=0;MQRankSum=0.704;QD=9.69;ReadPosRankSum=-1.951;SNPEFF_AMINO_ACID_CHANGE=E158D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_243493842_243493994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435549    GT:AD:DP:GQ:PL    0/1:44,31:75:99:757,0,836
1    243507680    rs3215963    C    CA    293.36    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=45.5553;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=0.604;QD=13.33;ReadPosRankSum=0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343783    GT:AD:DP:GQ:PL    0/1:13,9:22:99:332,0,393
1    243578812    rs10927010    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343783    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
1    243801283    rs320327    G    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263826    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    243828306    rs167661    T    A    100.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.61;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263826    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,134
1    244527857    rs10927214    T    C    35.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308105    GT:AD:DP:GQ:PL    0/1:4,2:6:65.83:66,0,125
1    244528127    rs9782996    T    C    228.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=15.21;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308105    GT:AD:DP:GQ:PL    0/1:6,9:15:99:258,0,213
1    244542085    rs78482860    G    A    74.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.85;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308105    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:104,0,69
1    244552134    rs61095163    CATTT    C    468.89    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=87.7306;IndelType=D;MQ=57.53;MQ0=0;MQRankSum=-1.184;QD=24.68;ReadPosRankSum=2.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308105    GT:AD:DP:GQ:PL    0/1:10,9:19:99:508,0,764
1    244574516    rs141669799    G    A    436.88    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=4.192;DB;DP=32;Dels=0.0;FS=3.163;HRun=0;HaplotypeScore=8.7216;MQ=58.55;MQ0=0;MQRankSum=0.68;QD=13.65;ReadPosRankSum=0.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468215    GT:AD:DP:GQ:PL    0/1:17,15:32:99:467,0,439
1    244580658    rs77712130    C    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462358    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    244595634    rs6686008    A    C    46.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.54;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366535    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:77,0,32
1    244595698    rs112813237    A    C    253.26    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=23.02;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366535    GT:AD:DP:GQ:PL    0/1:3,8:11:94.67:283,0,95
1    244601152    rs3127465    C    T    1075.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366535    GT:AD:DP:GQ:PL    1/1:0,33:33:90.24:1108,90,0
1    244624887    rs3124058    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    244715411    rs3003218    G    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
1    244715439    rs3003217    T    C    127.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
1    244723920    rs7522899    C    G    331.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=28;Dels=0.0;FS=3.08;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.905;QD=11.85;ReadPosRankSum=-0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:16,12:28:99:362,0,534
1    244724092    rs7544794    G    A    793.52    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.122;DB;DP=62;Dels=0.0;FS=5.35;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=2.049;QD=12.8;ReadPosRankSum=0.007;SNPEFF_AMINO_ACID_CHANGE=S233;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_244723970_244724447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:35,27:62:99:824,0,968
1    244724550    rs12217134    G    A    399.97    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.982;QD=13.79;ReadPosRankSum=-1.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:15,14:29:99:430,0,483
1    244724612    rs12217116    A    T    206.80    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.228;QD=18.8;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:4,7:11:99:237,0,127
1    244735556    rs4290045    G    C    157.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:190,15,0
1    244735858    rs10927267    A    G    792.93    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=61;Dels=0.0;FS=2.226;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;MQRankSum=-1.119;QD=13.0;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=T427;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_244735632_244736074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:32,29:61:99:823,0,915
1    244736257    rs10803222    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
1    244747051    rs6429486    G    C    295.86    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.044;QD=29.59;ReadPosRankSum=-1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:1,9:10:12.14:326,0,12
1    244747150    rs6429487    G    A    556.84    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=2.435;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.176;QD=20.62;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:10,17:27:99:587,0,269
1    244747293    rs6429488    C    T    193.06    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=17;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=11.36;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:8,9:17:99:223,0,176
1    244747294    rs6429489    G    A    232.51    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.415;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.22;QD=13.68;ReadPosRankSum=0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:7,10:17:99:263,0,209
1    244747339    rs6429490    G    A    104.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=10.4;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,182
1    244754961    rs41269387    C    A    288.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=16;Dels=0.0;FS=9.276;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.247;QD=18.03;ReadPosRankSum=2.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    0/1:6,10:16:99:318,0,203
1    244773784    rs6698173    T    C    1015.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366531    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1049,78,0
1    244773803    rs6698180    T    C    171.29    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.903;QD=5.71;ReadPosRankSum=-0.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391841    GT:AD:DP:GQ:PL    0/1:21,9:30:99:201,0,630
1    244773862    rs6698264    T    C    119.72    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=19;Dels=0.0;FS=2.058;HRun=0;HaplotypeScore=0.5784;MQ=58.78;MQ0=0;MQRankSum=-0.181;QD=6.3;ReadPosRankSum=-1.721;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391841    GT:AD:DP:GQ:PL    0/1:12,7:19:99:150,0,373
1    244773923    rs6658178    G    T    285.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391841    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:318,24,0
1    244803014    rs2653155    C    T    30.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.84;MQ0=0;QD=10.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485888    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:62,6,0
1    244803025    rs2819015    C    T    112.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.5;MQ0=0;QD=22.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485888    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:145,12,0
1    244803205    rs67470854    CTT    C    1094.01    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.484;DB;DP=115;FS=3.055;HRun=14;HaplotypeScore=618.7001;IndelType=D;MQ=57.61;MQ0=0;MQRankSum=0.003;QD=9.51;ReadPosRankSum=1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C1orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485888    GT:AD:DP:GQ:PL    0/1:25,49:115:99:1133,0,262
1    245006461    rs141476240    G    A    1239.99    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.162;DB;DP=85;Dels=0.0;FS=1.785;HRun=0;HaplotypeScore=0.9832;MQ=59.46;MQ0=0;MQRankSum=0.691;QD=14.59;ReadPosRankSum=0.269;SNPEFF_AMINO_ACID_CHANGE=G114S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_245006343_245008359;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM36A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411948    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1270,0,1253
1    245025697    rs11419280    T    TA    97.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=38;FS=0.0;HRun=19;HaplotypeScore=440.6768;IndelType=I;MQ=47.84;MQ0=0;MQRankSum=-1.107;QD=2.56;ReadPosRankSum=-1.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283179    GT:AD:DP:GQ:PL    1/1:21,11:38:17.38:139,17,0
1    245133489    rs7545078    T    G    38.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.05;SNPEFF_AMINO_ACID_CHANGE=V22G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_245133284_245133745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
1    245165456    rs111647414    C    T    777.91    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DB;DP=57;Dels=0.0;FS=2.911;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.392;QD=13.65;ReadPosRankSum=-0.2;SNPEFF_AMINO_ACID_CHANGE=R119W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_245165423_245165534;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    0/1:30,27:57:99:808,0,973
1    245222507    rs471747    A    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:72,0,70
1    245222518    rs657562    G    A    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    0/1:2,2:4:66.70:70,0,67
1    245222634    rs694793    C    G    461.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:495,42,0
1    245222839    rs579269    G    T    571.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:604,45,0
1    245245378    rs10927386    T    C    1111.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1144,84,0
1    245245402    rs10927387    C    T    1439.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=P203;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_245245385_245245464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1473,111,0
1    245246545    rs10927389    C    T    244.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366522    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
1    245703819    rs7551348    T    C    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366518    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
1    245703990    rs9919234    G    T    1835.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366518    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1869,150,0
1    245704130    rs61754898    G    C    4231.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.2679;MQ=59.27;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=A26P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_245704069_245704252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413001    GT:AD:DP:GQ:PL    1/1:0,124:126:99:4232,325,0
1    245772529    rs7555351    A    G    743.66    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=59.51;MQ0=0;MQRankSum=0.055;QD=15.82;ReadPosRankSum=1.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366518    GT:AD:DP:GQ:PL    0/1:20,27:47:99:774,0,520
1    245774964    rs10802225    A    G    94.16    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=18.83;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366518    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:124,0,26
1    245774979    rs10754457    C    T    119.82    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=17.12;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366518    GT:AD:DP:GQ:PL    0/1:2,5:7:63.71:150,0,64
1    245774993    rs10754458    A    G    154.32    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=17.15;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366518    GT:AD:DP:GQ:PL    0/1:4,5:9:99:184,0,133
1    245847356    rs116384676    C    T    296.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366518    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:330,24,0
1    245851304    rs6701084    A    G    197.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=24.72;SNPEFF_AMINO_ACID_CHANGE=T1289;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_245848707_245852109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413001    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:231,21,0
1    245861571    rs3205034    C    T    1418.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_AMINO_ACID_CHANGE=D1612;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_245861408_245861610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413001    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1452,108,0
1    245912840    rs8025    C    T    329.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=21;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.079;QD=15.68;ReadPosRankSum=-2.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    0/1:7,14:21:99:359,0,241
1    246021851    rs34527613    G    A    604    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=52;Dels=0.0;FS=8.44;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.837;QD=11.62;ReadPosRankSum=-0.047;SNPEFF_AMINO_ACID_CHANGE=L171;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_246021798_246021972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544586    GT:AD:DP:GQ:PL    0/1:32,20:52:99:634,0,920
1    246021941    rs2362587    T    C    1516.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_AMINO_ACID_CHANGE=A122;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_246021864_246021972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391836    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1550,123,0
1    246022071    rs2185370    C    T    173.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    1/1:0,6:6:18:207,18,0
1    246022159    rs2185369    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464398    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    246027024    rs12123124    A    G    142.76    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=28.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464398    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
1    246027029    rs61830203    A    T    141.64    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=28.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464398    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:174,15,0
1    246027034    rs2153404    G    C    267.81    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=29.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464398    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:301,24,0
1    246091115    rs2275313    C    G    153.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453676    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
1    246091457    rs6669768    T    C    289.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453676    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:322,27,0
1    246091515    rs2275318    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453676    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
1    246091531    rs6669866    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453676    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
1    246093465    rs11295264    GA    G    197.09    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.754;DB;DP=31;FS=0.0;HRun=14;HaplotypeScore=162.6917;IndelType=D;MQ=57.32;MQ0=0;MQRankSum=0.553;QD=6.36;ReadPosRankSum=0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    0/1:12,16:31:25.16:236,0,25
1    246093644    rs3738057    T    C    67.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
1    246110573    rs10802300    A    G    674.88    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.081;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.054;QD=16.46;ReadPosRankSum=0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    0/1:20,21:41:99:705,0,591
1    246110895    rs10924400    G    A    279.80    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=19.99;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    0/1:5,9:14:99:310,0,169
1    246116352    rs12137320    A    G    35.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.15;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    0/1:3,2:5:65.76:66,0,111
1    246489706    rs66465718    GA    G    179.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=11;HaplotypeScore=36.3381;IndelType=D;MQ=59.06;MQ0=0;QD=13.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455277    GT:AD:DP:GQ:PL    1/1:3,10:13:26.93:221,27,0
1    246490438    rs3737245    T    C    1547.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.56;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455277    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1580,120,0
1    246490442    rs3737246    A    G    1508.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=31.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455277    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1542,129,0
1    246490452    rs3737247    G    A    1674.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455277    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1707,138,0
1    246498866    rs10159376    A    C    702.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:736,57,0
1    246670281    rs6671418    G    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388985    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    246711816    rs11312430    GA    G    446.27    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.838;DB;DP=34;FS=0.0;HRun=5;HaplotypeScore=103.1552;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=-0.774;QD=13.13;ReadPosRankSum=0.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544618    GT:AD:DP:GQ:PL    0/1:16,18:34:99:485,0,482
1    246712033    rs1890160    A    G    422.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:456,36,0
1    246714426    rs12140400    A    G    216.07    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.694;QD=13.5;ReadPosRankSum=1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    0/1:9,7:16:99:246,0,309
1    246714587    rs10754526    G    A    391.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.83;MQ0=0;MQRankSum=-1.474;QD=9.79;ReadPosRankSum=-1.718;SNPEFF_AMINO_ACID_CHANGE=P241;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_246714515_246714604;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    0/1:20,20:40:99:421,0,631
1    246714631    rs80342781    T    A    45.33    QDFilter2;SnpCluster    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.2;MQ0=0;MQRankSum=-0.63;QD=1.81;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    0/1:11,14:25:75.33:75,0,368
1    246714632    rs75477023    G    A    45.33    QDFilter2;SnpCluster    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.708;QD=1.89;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    0/1:11,12:24:75.33:75,0,371
1    246714636    rs34850511    T    A    172.22    SnpCluster    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.962;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.849;QD=7.18;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    0/1:10,14:24:99:202,0,312
1    246714728    rs9426201    G    A    35.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    1/1:0,3:3:5.99:66,6,0
1    246720174    rs3120710    A    G    192.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:226,18,0
1    246720798    rs3124071    G    A    2696.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=37.45;SNPEFF_AMINO_ACID_CHANGE=I147;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_246720683_246720836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2729,211,0
1    246727558    rs3120713    G    T    353.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366514    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:386,30,0
1    246755124    rs6702823    T    C    1575.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_AMINO_ACID_CHANGE=L87S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_246754814_246755243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366511    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1608,126,0
1    246903654    rs3007322    G    C    1159.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCCPDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366509    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1193,90,0
1    246922124    rs12135184    G    T    150.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCCPDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366509    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:183,15,0
1    246929483    rs12144408    A    G    3158.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.865;MQ=59.25;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCCPDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366509    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3192,232,0
1    246939610    rs3838991    A    ATATT    1548.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=110.8206;IndelType=I;MQ=53.98;MQ0=0;QD=45.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508436    GT:AD:DP:GQ:PL    1/1:11,22:33:66.22:1590,66,0
1    246939856    rs3795465    G    A    3655.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4682;MQ=59.39;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=T257I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_246939842_246939986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451123    GT:AD:DP:GQ:PL    1/1:0,105:106:99:3655,271,0
1    246939943    rs6685364    T    C    3070.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.312;DB;DP=100;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.212;QD=30.7;ReadPosRankSum=0.035;SNPEFF_AMINO_ACID_CHANGE=K228R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_246939842_246939986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451123    GT:AD:DP:GQ:PL    1/1:1,99:100:99:3103,199,0
1    246940179    rs3795464    G    A    2787.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.16;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508436    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2820,205,0
1    246940182    rs3795463    C    A    2842.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508436    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2875,211,0
1    246940442    rs3795462    T    C    686.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508436    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:719,57,0
1    246940826    rs4926454    G    C    908.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.533;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=34.94;ReadPosRankSum=1.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508436    GT:AD:DP:GQ:PL    1/1:1,25:26:36.01:941,36,0
1    246940864    rs4244627    A    G    503.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.81;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.504;QD=33.58;ReadPosRankSum=-1.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508436    GT:AD:DP:GQ:PL    1/1:1,14:15:4.50:534,5,0
1    246940928    rs4926455    T    A    97.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-439E19.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508436    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:130,12,0
1    247006160    rs5021094    G    T    322.72    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.716;QD=11.53;ReadPosRankSum=-1.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326225    GT:AD:DP:GQ:PL    0/1:16,11:28:99:353,0,588
1    247007042    rs71680437    TA    T    302.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=11;HaplotypeScore=63.6408;IndelType=D;MQ=52.23;MQ0=0;QD=21.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326225    GT:AD:DP:GQ:PL    1/1:0,14:14:41.95:345,42,0
1    247021266    rs111386980    C    CTTCT    332.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=21.7227;IndelType=I;MQ=52.36;MQ0=0;QD=55.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477526    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:374,18,0
1    247025531    rs55727006    C    T    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326225    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,107
1    247048834    rs2642990    T    C    188.37    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=28;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=0.0;MQ=49.7;MQ0=0;MQRankSum=-2.82;QD=6.73;ReadPosRankSum=-1.08;SNPEFF_AMINO_ACID_CHANGE=N874S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247048795_247048982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391829    GT:AD:DP:GQ:PL    0/1:17,11:28:99:218,0,481
1    247054530    rs1472275    T    C    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=8.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326225    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,73
1    247055427    rs2800219    C    A    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
1    247055446    rs61854021    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
1    247063209    rs1779964    G    A    322.68    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.439;QD=18.98;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AHCTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326225    GT:AD:DP:GQ:PL    0/1:7,10:17:99:353,0,238
1    247109014    rs2642982    G    C    175.21    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.023;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.378;MQ=58.89;MQ0=0;MQRankSum=-0.206;QD=8.34;ReadPosRankSum=-0.702;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF695;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498046    GT:AD:DP:GQ:PL    0/1:13,8:21:99:205,0,284
1    247109168    rs6426191    G    A    362.23    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;MQRankSum=0.066;QD=12.49;ReadPosRankSum=-1.616;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF695;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487338    GT:AD:DP:GQ:PL    0/1:17,12:29:99:392,0,609
1    247109267    rs2642983    A    C    109.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF695;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487338    GT:AD:DP:GQ:PL    0/1:2,4:6:57.84:140,0,58
1    247109296    rs41267541    A    G    102.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.09;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF695;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487338    GT:AD:DP:GQ:PL    0/1:2,4:6:65.41:133,0,65
1    247129945    rs1779985    A    G    167.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF670;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474541    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
1    247162658    rs2642973    C    T    2062.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=R84K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247162650_247162742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF695;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339986    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2096,156,0
1    247163187    rs2818870    T    C    2059.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF695;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339986    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2093,153,0
1    247201852    rs2818880    T    C    148.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF670;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366503    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:181,15,0
1    247202032    rs10924897    G    T    996.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF670;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366503    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1029,78,0
1    247241795    rs41310571    C    A    223.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF670;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366503    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:257,21,0
1    247263973    rs35316550    T    C    819.25    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.908;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=59.03;MQ0=0;MQRankSum=-2.167;QD=17.07;ReadPosRankSum=1.114;SNPEFF_AMINO_ACID_CHANGE=Q280;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247263264_247264621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF669;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448299    GT:AD:DP:GQ:PL    0/1:23,25:48:99:849,0,781
1    247419509    rs1778540    T    C    7736.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=223;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9653;MQ=59.9;MQ0=0;QD=34.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=VN1R5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472952    GT:AD:DP:GQ:PL    1/1:0,223:223:99:7736,569,0
1    247419664    rs1778541    C    T    6347.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=192;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8358;MQ=59.68;MQ0=0;QD=32.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=VN1R5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472952    GT:AD:DP:GQ:PL    1/1:0,191:192:99:6347,473,0
1    247420421    rs41308154    C    T    218.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=15.63;ReadPosRankSum=0.299;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=VN1R5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472952    GT:AD:DP:GQ:PL    0/1:7,7:14:99:249,0,211
1    247485932    rs10924984    A    G    1403.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF496;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294753    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1436,123,0
1    247486421    rs6692645    G    C    85.98    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.437;QD=6.61;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF496;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294753    GT:AD:DP:GQ:PL    0/1:8,5:13:99:116,0,254
1    247493031    rs6674425    C    G    70.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=8.77;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF496;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294753    GT:AD:DP:GQ:PL    0/1:4,4:8:99:100,0,125
1    247586920    rs4925651    T    G    33.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
1    247587477    rs3806268    G    A    1589.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_AMINO_ACID_CHANGE=A244;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247587149_247588901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1623,120,0
1    247587531    rs4925543    A    G    1727.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=R262;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247587149_247588901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1760,132,0
1    247588053    rs34298354    C    T    527.16    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.673;DB;DP=40;Dels=0.0;FS=2.961;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.028;QD=13.18;ReadPosRankSum=-0.294;SNPEFF_AMINO_ACID_CHANGE=S436;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247587149_247588901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:23,17:40:99:557,0,711
1    247597223    rs111632834    G    A    34.15    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=16;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=0.0;MQ=52.05;MQ0=0;MQRankSum=0.942;QD=2.13;ReadPosRankSum=-2.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:13,3:16:64.15:64,0,414
1    247597258    rs10802498    G    C    753.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.97;MQ0=0;QD=37.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:786,60,0
1    247597276    rs77795397    A    G    412.37    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.704;DB;DP=28;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=2.995;MQ=54.87;MQ0=0;MQRankSum=1.797;QD=14.73;ReadPosRankSum=0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:15,13:28:99:442,0,420
1    247597281    rs12117378    A    G    526.11    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.899;DB;DP=29;Dels=0.0;FS=6.467;HRun=1;HaplotypeScore=2.995;MQ=55.06;MQ0=0;MQRankSum=2.434;QD=18.14;ReadPosRankSum=0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:13,16:29:99:556,0,368
1    247597329    rs12124866    C    T    1474.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=51.92;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1507,117,0
1    247597365    .    G    GTGTGTTCTGAGGCCTTCTCTATTCCAGAGCTCTCTGGTCAGA    11263.87    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.399;DP=74;FS=1.027;HRun=0;HaplotypeScore=2103.9612;IndelType=I;MQ=52.0;MQ0=0;MQRankSum=-2.728;QD=152.21;ReadPosRankSum=-3.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:25,16:74:99:11264,0,2798
1    247597365    rs10925022    G    A    1357.15    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=25.9869;MQ=50.49;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1390,105,0
1    247597656    rs3835304    TG    T    425.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=4;HaplotypeScore=36.7448;IndelType=D;MQ=58.33;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:1,13:14:39.12:468,39,0
1    247599025    rs10925024    C    T    120.24    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.05;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:150,0,28
1    247599070    rs4612666    T    C    175.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
1    247599232    rs10754557    G    A    1169.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.13;MQ0=0;QD=28.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:1,40:41:96.26:1202,96,0
1    247607642    rs12130711    C    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
1    247614194    rs12075565    A    G    771.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.554;QD=17.14;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:20,25:45:99:801,0,676
1    247614386    rs12070953    T    C    3456.51    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.698;DB;DP=229;Dels=0.0;FS=3.821;HRun=1;HaplotypeScore=5.8424;MQ=59.39;MQ0=0;MQRankSum=0.285;QD=15.09;ReadPosRankSum=0.835;SNPEFF_AMINO_ACID_CHANGE=D300G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247614255_247615308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318749    GT:AD:DP:GQ:PL    0/1:111,117:229:99:3457,0,3453
1    247614407    rs12065526    G    A    3175.73    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=212;Dels=0.0;FS=1.12;HRun=0;HaplotypeScore=2.5712;MQ=59.24;MQ0=0;MQRankSum=0.92;QD=14.98;ReadPosRankSum=-1.693;SNPEFF_AMINO_ACID_CHANGE=T293I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247614255_247615308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318749    GT:AD:DP:GQ:PL    0/1:101,111:212:99:3206,0,3113
1    247614553    rs12086048    C    T    472.91    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=4.136;DB;DP=58;Dels=0.0;FS=1.173;HRun=0;HaplotypeScore=0.9665;MQ=59.6;MQ0=0;MQRankSum=0.346;QD=8.15;ReadPosRankSum=0.329;SNPEFF_AMINO_ACID_CHANGE=T244;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247614255_247615308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2B11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318749    GT:AD:DP:GQ:PL    0/1:37,21:58:99:503,0,1061
1    247614617    rs4925663    C    T    823.86    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.307;DB;DP=45;Dels=0.0;FS=4.525;HRun=0;HaplotypeScore=1.8255;MQ=59.49;MQ0=0;MQRankSum=0.077;QD=18.31;ReadPosRankSum=0.769;SNPEFF_AMINO_ACID_CHANGE=G223D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247614255_247615308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318749    GT:AD:DP:GQ:PL    0/1:19,26:45:99:854,0,513
1    247614693    rs6695302    C    T    972.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=32.41;SNPEFF_AMINO_ACID_CHANGE=V198M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247614255_247615308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318749    GT:AD:DP:GQ:PL    1/1:0,30:30:78.21:1005,78,0
1    247614896    rs11583410    A    C    394.67    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=35;Dels=0.0;FS=5.599;HRun=0;HaplotypeScore=0.7887;MQ=58.67;MQ0=0;MQRankSum=1.172;QD=11.28;ReadPosRankSum=-0.822;SNPEFF_AMINO_ACID_CHANGE=I130S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247614255_247615308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318749    GT:AD:DP:GQ:PL    0/1:21,14:35:99:425,0,622
1    247615261    rs74468375    GA    G    556.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.845;DB;DP=36;FS=0.0;HRun=2;HaplotypeScore=92.0495;IndelType=D;MQ=60.3;MQ0=0;MQRankSum=0.677;QD=15.46;ReadPosRankSum=0.677;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_247614255_247615308;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2B11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000318749    GT:AD:DP:GQ:PL    0/1:18,18:36:99:596,0,660
1    247615340    rs55889481    C    T    143.57    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.72;MQ0=0;MQRankSum=0.059;QD=9.57;ReadPosRankSum=0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:9,6:15:99:174,0,319
1    247615358    rs10925030    C    G    98.74    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;MQRankSum=0.278;QD=8.98;ReadPosRankSum=1.663;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336119    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,238
1    247654993    rs10925061    T    C    1601.40    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DB;DP=102;Dels=0.0;FS=3.713;HRun=1;HaplotypeScore=0.9734;MQ=59.59;MQ0=0;MQRankSum=0.46;QD=15.7;ReadPosRankSum=1.613;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR2W5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366492    GT:AD:DP:GQ:PL    0/1:46,56:102:99:1631,0,1324
1    247655275    rs12141850    T    C    1088.43    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.889;DB;DP=90;Dels=0.0;FS=7.883;HRun=0;HaplotypeScore=2.6163;MQ=59.54;MQ0=0;MQRankSum=-1.848;QD=12.09;ReadPosRankSum=0.144;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR2W5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366492    GT:AD:DP:GQ:PL    0/1:48,42:90:99:1118,0,1488
1    247694949    rs6702693    G    C    435.50    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.391;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=10.89;ReadPosRankSum=0.615;SNPEFF_AMINO_ACID_CHANGE=L289V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247693434_247695842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366487    GT:AD:DP:GQ:PL    0/1:25,15:40:99:465,0,869
1    247694958    rs6702695    G    A    511.87    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.04;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.992;QD=12.48;ReadPosRankSum=0.437;SNPEFF_AMINO_ACID_CHANGE=L286;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247693434_247695842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366487    GT:AD:DP:GQ:PL    0/1:24,17:41:99:542,0,818
1    247695612    rs6657127    G    A    1436.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.23;SNPEFF_AMINO_ACID_CHANGE=P68S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247693434_247695842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366487    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1470,111,0
1    247695756    rs6697472    T    C    1116.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=T20A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247693434_247695842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366487    GT:AD:DP:GQ:PL    1/1:0,37:37:90.28:1149,90,0
1    247695958    rs6697675    T    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366489    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
1    247712303    rs41315846    T    C    623.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1orf150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366489    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:657,48,0
1    247752161    rs10925085    T    C    1403.15    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.475;DB;DP=123;Dels=0.0;FS=5.729;HRun=3;HaplotypeScore=2.9707;MQ=59.36;MQ0=0;MQRankSum=-0.922;QD=11.41;ReadPosRankSum=0.066;SNPEFF_AMINO_ACID_CHANGE=L167P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247751662_247752615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2G2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320065    GT:AD:DP:GQ:PL    0/1:64,59:123:99:1433,0,2000
1    247752367    rs869111    A    G    893.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.431;DB;DP=80;Dels=0.0;FS=14.257;HRun=2;HaplotypeScore=1.6988;MQ=58.84;MQ0=0;MQRankSum=0.381;QD=11.17;ReadPosRankSum=-0.619;SNPEFF_AMINO_ACID_CHANGE=R236G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247751662_247752615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2G2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320065    GT:AD:DP:GQ:PL    0/1:45,35:80:99:924,0,1366
1    247769752    rs61730407    A    G    500.24    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.046;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.29;QD=10.64;ReadPosRankSum=1.897;SNPEFF_AMINO_ACID_CHANGE=I289V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247768856_247769838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2G3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320002    GT:AD:DP:GQ:PL    0/1:28,19:47:99:530,0,868
1    247835352    rs1151641    C    T    443.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359688    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:476,36,0
1    247835674    rs28446289    G    A    751.47    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.386;DB;DP=46;Dels=0.0;FS=11.618;HRun=0;HaplotypeScore=1.7338;MQ=59.5;MQ0=0;MQRankSum=0.671;QD=16.34;ReadPosRankSum=2.078;SNPEFF_AMINO_ACID_CHANGE=R224C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247835320_247836365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359688    GT:AD:DP:GQ:PL    0/1:22,24:46:99:781,0,709
1    247835908    rs28556931    T    A    387.88    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.179;DB;DP=39;Dels=0.0;FS=9.774;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.765;QD=9.95;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=M146L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247835320_247836365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359688    GT:AD:DP:GQ:PL    0/1:24,15:39:99:418,0,789
1    247835950    rs1151640    T    C    874.43    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=3.664;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=19.43;ReadPosRankSum=0.737;SNPEFF_AMINO_ACID_CHANGE=I132V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247835320_247836365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359688    GT:AD:DP:GQ:PL    0/1:17,28:45:99:904,0,484
1    247836008    rs28555391    G    A    486.29    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.713;DB;DP=49;Dels=0.0;FS=4.262;HRun=2;HaplotypeScore=1.7803;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=9.92;ReadPosRankSum=0.852;SNPEFF_AMINO_ACID_CHANGE=F112;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247835320_247836365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359688    GT:AD:DP:GQ:PL    0/1:30,19:49:99:516,0,927
1    247836207    rs28711149    T    A    329.91    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8583;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=13.2;ReadPosRankSum=2.257;SNPEFF_AMINO_ACID_CHANGE=K46I;SNPEFF_CODON_CHANGE=aAa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247835320_247836365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359688    GT:AD:DP:GQ:PL    0/1:13,12:25:99:360,0,419
1    247921100    rs1552812    T    G    1374.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9565;MQ=59.09;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=G203;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247920676_247921982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408896    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1407,111,0
1    247921352    rs1552813    C    T    1205.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=36.52;SNPEFF_AMINO_ACID_CHANGE=A119;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247920676_247921982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408896    GT:AD:DP:GQ:PL    1/1:0,32:33:90.30:1238,90,0
1    247921717    rs10888359    C    A    204.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.71;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_247920676_247921982;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408896    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:237,18,0
1    247978087    rs10888248    G    A    772.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.04;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357627    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:806,66,0
1    247978319    rs6695283    A    G    853.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_AMINO_ACID_CHANGE=I238T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247978102_247979031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14A16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357627    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:887,66,0
1    247978541    rs35979231    AAGG    A    4801.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;FS=0.0;HRun=0;HaplotypeScore=433.0074;IndelType=D;MQ=56.98;MQ0=0;QD=48.5;SNPEFF_AMINO_ACID_CHANGE=SL163L;SNPEFF_CODON_CHANGE=tcctta/tta;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_1_247978102_247979031;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14A16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357627    GT:AD:DP:GQ:PL    1/1:2,97:99:99:4801,286,0
1    247978996    rs10888249    A    G    1307.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_247978102_247979031;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14A16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357627    GT:AD:DP:GQ:PL    1/1:0,40:40:96.32:1341,96,0
1    248004614    rs6667389    G    A    3401.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.11;MQ0=0;QD=34.36;SNPEFF_AMINO_ACID_CHANGE=T195;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248004199_248005254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355784    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3402,250,0
1    248004687    rs10888255    C    G    3707.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6722;MQ=57.32;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=R171P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248004199_248005254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355784    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3708,295,0
1    248004775    rs10888256    C    T    2782.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=34.35;SNPEFF_AMINO_ACID_CHANGE=A142T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248004199_248005254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355784    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2816,214,0
1    248004848    rs4607924    G    C    1200.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=F117L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248004199_248005254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355784    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1233,93,0
1    248004877    rs10888257    C    T    780.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=39.02;SNPEFF_AMINO_ACID_CHANGE=G108S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248004199_248005254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355784    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:813,60,0
1    248004884    rs1339845    T    C    707.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.38;SNPEFF_AMINO_ACID_CHANGE=V105;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248004199_248005254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355784    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:741,57,0
1    248005213    rs7522811    G    C    1035.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=33.41;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_1_248004199_248005254;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355784    GT:AD:DP:GQ:PL    1/1:0,31:31:81.23:1069,81,0
1    248020556    rs11204523    G    C    115.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.2;MQ0=0;QD=23.06;SNPEFF_AMINO_ACID_CHANGE=W3S;SNPEFF_CODON_CHANGE=tGg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248020501_248020968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366481    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
1    248028219    rs946696    G    A    280.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=P243;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248028007_248028237;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366481    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:313,24,0
1    248058755    rs1337876    A    G    49.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537741    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
1    248058797    rs1856248    T    G    131.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537741    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
1    248058845    rs4500353    A    C    564.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537741    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:598,45,0
1    248058879    rs6587387    A    T    795.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360358    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:828,60,0
1    248059423    rs10888267    C    T    1549.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=30.38;SNPEFF_AMINO_ACID_CHANGE=R179C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248058889_248059833;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360358    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1582,117,0
1    248059456    rs12135078    G    A    1907.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=35.98;SNPEFF_AMINO_ACID_CHANGE=V190I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248058889_248059833;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360358    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1940,144,0
1    248059476    rs12139390    A    C    1722.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.669;DB;DP=55;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=2.8304;MQ=58.73;MQ0=0;MQRankSum=1.039;QD=31.32;ReadPosRankSum=1.039;SNPEFF_AMINO_ACID_CHANGE=E196D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248058889_248059833;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360358    GT:AD:DP:GQ:PL    1/1:1,54:55:98.79:1755,99,0
1    248059703    rs11204545    T    A    1724.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=M272K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248058889_248059833;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360358    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1757,132,0
1    248059712    rs11204546    T    C    1432.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=29.23;SNPEFF_AMINO_ACID_CHANGE=M275T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248058889_248059833;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360358    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1465,120,0
1    248059856    rs10888268    T    C    280.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360358    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
1    248084434    rs11204563    G    A    1024.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.78;MQ0=1;QD=22.76;SNPEFF_AMINO_ACID_CHANGE=G39S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248084320_248085258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319968    GT:AD:DP:GQ:PL    1/1:0,45:45:93.21:1057,93,0
1    248084464    rs11204564    T    C    796.29    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.942;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6162;MQ=28.4;MQ0=1;MQRankSum=1.181;QD=15.02;ReadPosRankSum=-0.661;SNPEFF_AMINO_ACID_CHANGE=W49R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248084320_248085258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319968    GT:AD:DP:GQ:PL    1/1:4,49:53:31.84:829,32,0
1    248084609    rs140703773    C    T    67.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.64;MQ0=11;QD=2.7;SNPEFF_AMINO_ACID_CHANGE=A97V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248084320_248085258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319968    GT:AD:DP:GQ:PL    1/1:0,25:25:9.02:99,9,0
1    248084631    rs28689982    A    C    54.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.23;MQ0=10;QD=2.28;SNPEFF_AMINO_ACID_CHANGE=T104;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248084320_248085258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319968    GT:AD:DP:GQ:PL    1/1:0,24:24:9.01:87,9,0
1    248084825    rs61857492    C    T    71.45    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=20;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.734;MQ=14.78;MQ0=10;MQRankSum=-0.895;QD=3.57;ReadPosRankSum=-1.214;SNPEFF_AMINO_ACID_CHANGE=A169V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248084320_248085258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319968    GT:AD:DP:GQ:PL    0/1:8,12:20:36.14:101,0,36
1    248084980    rs4362017    G    T    94.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.55;MQ0=29;QD=2.86;SNPEFF_AMINO_ACID_CHANGE=A221S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248084320_248085258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319968    GT:AD:DP:GQ:PL    1/1:15,18:33:12.03:127,12,0
1    248085108    rs4625315    C    T    1332.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.76;MQ0=13;QD=24.68;SNPEFF_AMINO_ACID_CHANGE=H263;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248084320_248085258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319968    GT:AD:DP:GQ:PL    1/1:2,52:54:99:1366,117,0
1    248085341    rs4925773    T    A    477.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.08;MQ0=0;QD=34.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319968    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:510,39,0
1    248112627    rs4925787    T    C    2252.98    PASS    AB=0.265;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.189;DB;DP=114;Dels=0.0;FS=1.002;HRun=0;HaplotypeScore=2.3656;MQ=49.6;MQ0=3;MQRankSum=6.522;QD=19.76;ReadPosRankSum=-1.959;SNPEFF_AMINO_ACID_CHANGE=C156;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    0/1:30,83:114:99:2283,0,441
1    248112745    rs4925788    G    T    1256.87    MQFilter40    AB=0.203;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=65;Dels=0.0;FS=16.057;HRun=0;HaplotypeScore=2.444;MQ=37.63;MQ0=5;MQRankSum=3.122;QD=19.34;ReadPosRankSum=-1.243;SNPEFF_AMINO_ACID_CHANGE=G196C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    0/1:13,51:65:99:1287,0,149
1    248112762    rs4925789    T    C    678.06    MQFilter40;SnpCluster    AB=0.15;AC=1;AF=0.50;AN=2;BaseQRankSum=1.731;DB;DP=60;Dels=0.0;FS=24.42;HRun=0;HaplotypeScore=4.1836;MQ=33.23;MQ0=4;MQRankSum=1.588;QD=11.3;ReadPosRankSum=0.68;SNPEFF_AMINO_ACID_CHANGE=S201;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    0/1:9,51:60:60.27:708,0,60
1    248112763    rs4925790    G    A    633.68    MQFilter40;SnpCluster    AB=0.15;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.207;DB;DP=60;Dels=0.0;FS=25.455;HRun=0;HaplotypeScore=4.1836;MQ=33.91;MQ0=4;MQRankSum=2.106;QD=10.56;ReadPosRankSum=1.108;SNPEFF_AMINO_ACID_CHANGE=A202T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    0/1:9,51:60:65.10:664,0,65
1    248112771    rs4925791    C    T    1541.82    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DB;DP=64;Dels=0.0;FS=15.311;HRun=3;HaplotypeScore=5.182;MQ=36.58;MQ0=1;MQRankSum=2.142;QD=24.09;ReadPosRankSum=0.855;SNPEFF_AMINO_ACID_CHANGE=I204;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    1/1:6,58:64:51.53:1575,52,0
1    248112809    rs4925583    A    G    3332.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DB;DP=111;Dels=0.0;FS=5.376;HRun=0;HaplotypeScore=2.8633;MQ=45.8;MQ0=3;MQRankSum=1.985;QD=30.02;ReadPosRankSum=1.544;SNPEFF_AMINO_ACID_CHANGE=Y217C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    1/1:3,108:111:99:3332,234,0
1    248112836    rs4925792    A    G    3665.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=48.71;MQ0=3;QD=30.05;SNPEFF_AMINO_ACID_CHANGE=H226R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    1/1:1,121:122:99:3666,307,0
1    248113026    rs10888281    T    A    3631.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=48.84;MQ0=1;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=Y289*;SNPEFF_CODON_CHANGE=taT/taA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3632,283,0
1    248113040    rs10888282    A    G    3122.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.48;MQ0=1;QD=29.45;SNPEFF_AMINO_ACID_CHANGE=K294R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248112160_248113098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3155,259,0
1    248113206    rs10888283    C    G    437.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=57.07;MQ0=0;QD=33.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357191    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:470,36,0
1    248129240    rs4478844    G    A    1651.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.05;MQ0=0;QD=33.71;SNPEFF_AMINO_ACID_CHANGE=V203M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248128535_248129641;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2AK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366480    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1685,132,0
1    248153683    rs139725484    A    G    2322.21    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.19;DB;DP=161;Dels=0.0;FS=0.641;HRun=0;HaplotypeScore=0.9916;MQ=59.86;MQ0=0;MQRankSum=3.088;QD=14.42;ReadPosRankSum=-2.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366478    GT:AD:DP:GQ:PL    0/1:78,83:161:99:2352,0,2438
1    248224099    rs6666048    T    C    3101.48    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.72;DB;DP=250;DS;Dels=0.0;FS=8.525;HRun=0;HaplotypeScore=6.0131;MQ=55.38;MQ0=0;MQRankSum=1.322;QD=12.41;ReadPosRankSum=-1.265;SNPEFF_AMINO_ACID_CHANGE=I39T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248223984_248224922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359959    GT:AD:DP:GQ:PL    0/1:136,113:250:99:3131,0,4581
1    248224216    rs6658227    C    T    3129.71    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=3.641;DB;DP=249;DS;Dels=0.0;FS=9.316;HRun=1;HaplotypeScore=5.2366;MQ=57.0;MQ0=0;MQRankSum=2.493;QD=12.57;ReadPosRankSum=-0.274;SNPEFF_AMINO_ACID_CHANGE=P78L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248223984_248224922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359959    GT:AD:DP:GQ:PL    0/1:136,113:249:99:3160,0,4572
1    248224294    rs6658256    C    T    2188.77    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.773;DB;DP=204;DS;Dels=0.0;FS=5.261;HRun=1;HaplotypeScore=0.0;MQ=54.13;MQ0=5;MQRankSum=-2.405;QD=10.68;ReadPosRankSum=-1.133;SNPEFF_AMINO_ACID_CHANGE=S104L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248223984_248224922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359959    GT:AD:DP:GQ:PL    0/1:112,91:204:99:2219,0,3503
1    248224398    rs55937620    A    G    1056.78    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.392;DB;DP=154;Dels=0.0;FS=3.218;HRun=0;HaplotypeScore=0.0;MQ=52.14;MQ0=3;MQRankSum=-6.025;QD=6.86;ReadPosRankSum=1.384;SNPEFF_AMINO_ACID_CHANGE=M139V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248223984_248224922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359959    GT:AD:DP:GQ:PL    0/1:95,59:154:99:1087,0,3210
1    248224489    rs56834114    A    G    43.05    QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.698;DB;DP=81;Dels=0.0;FS=28.66;HRun=0;HaplotypeScore=0.8321;MQ=50.47;MQ0=9;MQRankSum=-4.763;QD=0.53;ReadPosRankSum=0.969;SNPEFF_AMINO_ACID_CHANGE=Q169R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248223984_248224922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359959    GT:AD:DP:GQ:PL    0/1:62,19:81:73.05:73,0,2176
1    248224569    rs75239130    G    T    380.06    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.338;DB;DP=91;Dels=0.0;FS=7.558;HRun=0;HaplotypeScore=7.466;MQ=48.6;MQ0=7;MQRankSum=-5.223;QD=4.18;ReadPosRankSum=2.934;SNPEFF_AMINO_ACID_CHANGE=G196C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248223984_248224922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359959    GT:AD:DP:GQ:PL    0/1:68,23:91:99:410,0,1960
1    248224595    rs76336532    C    T    258.15    HaplotypeScoreFilter13    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.774;DB;DP=104;Dels=0.0;FS=10.613;HRun=3;HaplotypeScore=25.8169;MQ=48.79;MQ0=10;MQRankSum=-4.79;QD=2.48;ReadPosRankSum=-1.014;SNPEFF_AMINO_ACID_CHANGE=I204;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248223984_248224922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359959    GT:AD:DP:GQ:PL    0/1:83,21:104:99:288,0,2296
1    248224754    rs55893924    T    C    1941.04    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.412;DB;DP=153;Dels=0.0;FS=26.634;HRun=1;HaplotypeScore=0.9159;MQ=49.76;MQ0=10;MQRankSum=-0.157;QD=12.6;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=T257;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248223984_248224922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359959    GT:AD:DP:GQ:PL    0/1:73,80:153:99:1971,0,2103
1    248247308    rs61856418    A    C    255.61    MQFilter40    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=75;Dels=0.0;FS=3.851;HRun=1;HaplotypeScore=0.0;MQ=24.67;MQ0=4;MQRankSum=-1.115;QD=3.41;ReadPosRankSum=0.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366478    GT:AD:DP:GQ:PL    0/1:54,21:75:99:286,0,919
1    248247586    rs10788754    T    G    801.18    MQFilter40;SnpCluster    AB=0.301;AC=1;AF=0.50;AN=2;BaseQRankSum=2.961;DB;DP=105;Dels=0.0;FS=2.496;HRun=1;HaplotypeScore=0.8321;MQ=20.17;MQ0=41;MQRankSum=-1.945;QD=7.63;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366478    GT:AD:DP:GQ:PL    0/1:31,72:105:99:831,0,289
1    248247588    .    T    A    267.18    MQFilter40;SnpCluster    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DP=109;Dels=0.0;FS=5.111;HRun=0;HaplotypeScore=0.8321;MQ=20.29;MQ0=43;MQRankSum=2.142;QD=2.45;ReadPosRankSum=0.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366478    GT:AD:DP:GQ:PL    0/1:82,26:109:99:297,0,799
1    248247590    rs55839802    G    A    812.24    MQFilter40;SnpCluster    AB=0.305;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.628;DB;DP=105;Dels=0.0;FS=2.506;HRun=0;HaplotypeScore=0.8321;MQ=20.46;MQ0=43;MQRankSum=-1.7;QD=7.74;ReadPosRankSum=-0.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366478    GT:AD:DP:GQ:PL    0/1:32,73:105:99:842,0,293
1    248247592    rs28460545    G    C    818.96    MQFilter40;SnpCluster    AB=0.302;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.169;DB;DP=106;Dels=0.0;FS=2.613;HRun=0;HaplotypeScore=0.8321;MQ=20.25;MQ0=45;MQRankSum=-2.717;QD=7.73;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366478    GT:AD:DP:GQ:PL    0/1:32,74:106:99:849,0,295
1    248247706    rs113076705    G    A    546.08    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=0.518;DB;DP=98;Dels=0.0;FS=15.734;HRun=1;HaplotypeScore=1.7781;MQ=44.26;MQ0=9;MQRankSum=-0.916;QD=5.57;ReadPosRankSum=2.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366478    GT:AD:DP:GQ:PL    0/1:66,32:98:99:576,0,1955
1    248343543    rs9435919    C    T    3310.97    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.499;DB;DP=227;DS;Dels=0.0;FS=2.338;HRun=1;HaplotypeScore=1.8055;MQ=50.46;MQ0=2;MQRankSum=-0.849;QD=14.59;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=L86;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248343288_248344331;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359682    GT:AD:DP:GQ:PL    0/1:106,121:227:99:3311,0,3079
1    248343945    rs4244171    C    G    907.56    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.337;DB;DP=159;Dels=0.0;FS=3.444;HRun=1;HaplotypeScore=1.8273;MQ=55.94;MQ0=8;MQRankSum=-2.805;QD=5.71;ReadPosRankSum=-2.783;SNPEFF_AMINO_ACID_CHANGE=R220G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248343288_248344331;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359682    GT:AD:DP:GQ:PL    0/1:112,47:159:99:938,0,3370
1    248343990    rs4916104    T    C    1137.40    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.77;DB;DP=153;Dels=0.0;FS=5.583;HRun=0;HaplotypeScore=3.6881;MQ=54.92;MQ0=8;MQRankSum=-2.559;QD=7.43;ReadPosRankSum=0.17;SNPEFF_AMINO_ACID_CHANGE=C235R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248343288_248344331;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359682    GT:AD:DP:GQ:PL    0/1:97,56:153:99:1167,0,3133
1    248344442    rs4916105    C    T    298.52    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.964;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=18.66;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359682    GT:AD:DP:GQ:PL    0/1:7,9:16:99:329,0,233
1    248366702    rs4916112    G    A    3956.88    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=239;DS;Dels=0.0;FS=7.5;HRun=1;HaplotypeScore=1.9494;MQ=58.09;MQ0=0;MQRankSum=0.471;QD=16.56;ReadPosRankSum=-0.809;SNPEFF_AMINO_ACID_CHANGE=E111;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248366332_248367392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456743    GT:AD:DP:GQ:PL    0/1:106,133:239:99:3957,0,3077
1    248367415    rs4916082    C    T    441.25    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.123;DB;DP=21;Dels=0.0;FS=4.191;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=21.01;ReadPosRankSum=-0.905;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456743    GT:AD:DP:GQ:PL    0/1:8,13:21:99:471,0,263
1    248402758    rs6666148    C    T    1031.38    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=92;Dels=0.01;FS=0.0;HRun=5;HaplotypeScore=2.6308;MQ=59.75;MQ0=0;MQRankSum=0.134;QD=11.09;ReadPosRankSum=1.532;SNPEFF_AMINO_ACID_CHANGE=H176;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248402231_248403166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306687    GT:AD:DP:GQ:PL    0/1:51,41:92:99:1061,0,1582
1    248436456    rs142107755    C    A    40.48    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DB;DP=55;Dels=0.0;FS=5.017;HRun=0;HaplotypeScore=0.734;MQ=23.52;MQ0=19;MQRankSum=-0.573;QD=0.74;ReadPosRankSum=1.677;SNPEFF_AMINO_ACID_CHANGE=A221S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248436073_248437138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318021    GT:AD:DP:GQ:PL    0/1:44,11:55:70.47:70,0,695
1    248436611    rs10888338    G    A    394.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=84;Dels=0.0;FS=7.757;HRun=0;HaplotypeScore=12.2747;MQ=40.42;MQ0=11;MQRankSum=-0.447;QD=4.7;ReadPosRankSum=-1.546;SNPEFF_AMINO_ACID_CHANGE=A169V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248436073_248437138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318021    GT:AD:DP:GQ:PL    0/1:56,28:84:99:425,0,1420
1    248436616    rs71538179    A    G    615.47    HaplotypeScoreFilter13    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.086;DB;DP=87;Dels=0.0;FS=3.697;HRun=0;HaplotypeScore=13.2412;MQ=40.32;MQ0=11;MQRankSum=-4.669;QD=7.07;ReadPosRankSum=-2.218;SNPEFF_AMINO_ACID_CHANGE=C167;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248436073_248437138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318021    GT:AD:DP:GQ:PL    0/1:41,46:87:99:645,0,1182
1    248436638    .    A    G    179.24    QDFilter2    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.481;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=40.39;MQ0=11;MQRankSum=-5.501;QD=1.77;ReadPosRankSum=-1.526;SNPEFF_AMINO_ACID_CHANGE=V160A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248436073_248437138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318021    GT:AD:DP:GQ:PL    0/1:76,22:100:99:209,0,2101
1    248436805    rs28399248    T    G    1567.01    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=4.145;DB;DP=152;Dels=0.0;FS=5.101;HRun=1;HaplotypeScore=84.4387;MQ=28.61;MQ0=21;MQRankSum=-1.488;QD=10.31;ReadPosRankSum=0.122;SNPEFF_AMINO_ACID_CHANGE=T104;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248436073_248437138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318021    GT:AD:DP:GQ:PL    0/1:46,106:152:99:1597,0,854
1    248436809    rs61832700    G    A    567.63    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=149;Dels=0.0;FS=30.896;HRun=0;HaplotypeScore=83.4809;MQ=28.65;MQ0=21;MQRankSum=-3.109;QD=3.81;ReadPosRankSum=1.455;SNPEFF_AMINO_ACID_CHANGE=P103L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248436073_248437138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318021    GT:AD:DP:GQ:PL    0/1:91,58:149:99:598,0,1904
1    248436811    rs61832701    G    C    559.88    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=0.071;DB;DP=149;Dels=0.0;FS=28.268;HRun=0;HaplotypeScore=80.7742;MQ=29.11;MQ0=21;MQRankSum=-2.39;QD=3.76;ReadPosRankSum=2.38;SNPEFF_AMINO_ACID_CHANGE=L102;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248436073_248437138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318021    GT:AD:DP:GQ:PL    0/1:94,55:149:99:590,0,2015
1    248457979    rs6667171    C    A    1749.44    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=6.286;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.01;MQ0=0;MQRankSum=0.674;QD=19.02;ReadPosRankSum=1.409;SNPEFF_AMINO_ACID_CHANGE=R301L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248457918_248458880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317996    GT:AD:DP:GQ:PL    0/1:38,53:92:99:1779,0,1107
1    248458689    rs6674940    A    G    91.59    QDFilter2    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=72;Dels=0.0;FS=22.014;HRun=0;HaplotypeScore=0.0;MQ=40.83;MQ0=5;MQRankSum=-2.003;QD=1.27;ReadPosRankSum=-0.657;SNPEFF_AMINO_ACID_CHANGE=L64;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248457918_248458880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317996    GT:AD:DP:GQ:PL    0/1:57,15:72:99:122,0,1382
1    248458717    rs12745228    C    G    205.52    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.929;DB;DP=73;Dels=0.0;FS=14.848;HRun=0;HaplotypeScore=0.8321;MQ=46.56;MQ0=3;MQRankSum=-2.153;QD=2.82;ReadPosRankSum=-0.751;SNPEFF_AMINO_ACID_CHANGE=R55T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248457918_248458880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317996    GT:AD:DP:GQ:PL    0/1:53,20:73:99:236,0,1491
1    248458974    rs11204626    T    A    323.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.605;DB;DP=26;Dels=0.0;FS=4.925;HRun=1;HaplotypeScore=0.0;MQ=57.82;MQ0=0;MQRankSum=-0.517;QD=12.43;ReadPosRankSum=-0.136;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317996    GT:AD:DP:GQ:PL    0/1:13,13:26:99:353,0,377
1    248486895    rs4244184    G    T    480.31    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=3.34;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.753;QD=17.15;ReadPosRankSum=-0.282;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317965    GT:AD:DP:GQ:PL    0/1:11,17:28:99:510,0,318
1    248486913    rs4244185    A    G    392.90    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.401;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.838;QD=11.23;ReadPosRankSum=1.54;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317965    GT:AD:DP:GQ:PL    0/1:19,16:35:99:423,0,497
1    248487300    rs4916129    C    T    2771.74    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.244;DB;DP=180;Dels=0.0;FS=1.871;HRun=1;HaplotypeScore=4.5145;MQ=48.76;MQ0=2;MQRankSum=-6.338;QD=15.4;ReadPosRankSum=1.756;SNPEFF_AMINO_ACID_CHANGE=D191N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248486894_248487899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317965    GT:AD:DP:GQ:PL    0/1:80,100:180:99:2802,0,2530
1    248487338    rs4916130    C    A    2272.02    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.535;DB;DP=170;Dels=0.0;FS=1.95;HRun=1;HaplotypeScore=1.612;MQ=49.36;MQ0=2;MQRankSum=-7.259;QD=13.36;ReadPosRankSum=0.552;SNPEFF_AMINO_ACID_CHANGE=C178F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248486894_248487899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317965    GT:AD:DP:GQ:PL    0/1:78,92:170:99:2302,0,2463
1    248487638    rs7555310    A    G    2647.53    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.827;DB;DP=206;Dels=0.0;FS=1.746;HRun=0;HaplotypeScore=5.9772;MQ=59.19;MQ0=2;MQRankSum=-0.375;QD=12.85;ReadPosRankSum=-0.227;SNPEFF_AMINO_ACID_CHANGE=V78A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248486894_248487899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317965    GT:AD:DP:GQ:PL    0/1:106,99:206:99:2678,0,3207
1    248487768    rs7555424    A    G    2404.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.795;DB;DP=180;Dels=0.0;FS=5.309;HRun=1;HaplotypeScore=4.3687;MQ=59.2;MQ0=0;MQRankSum=-1.644;QD=13.36;ReadPosRankSum=0.823;SNPEFF_AMINO_ACID_CHANGE=F35L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248486894_248487899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2M7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317965    GT:AD:DP:GQ:PL    0/1:90,90:180:99:2434,0,3002
1    248512064    rs28372410    T    G    616.79    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.803;QD=9.95;ReadPosRankSum=-0.883;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14C36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317861    GT:AD:DP:GQ:PL    0/1:37,25:62:99:647,0,1169
1    248512094    rs28728105    C    T    783.94    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=1.254;DB;DP=78;Dels=0.0;FS=2.119;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.069;QD=10.05;ReadPosRankSum=-0.635;SNPEFF_AMINO_ACID_CHANGE=T6;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248512077_248513015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14C36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317861    GT:AD:DP:GQ:PL    0/1:51,27:78:99:814,0,1542
1    248512637    rs2039824    C    T    869.43    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.205;DB;DP=59;Dels=0.0;FS=0.99;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.948;QD=14.74;ReadPosRankSum=0.371;SNPEFF_AMINO_ACID_CHANGE=C187;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248512077_248513015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14C36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317861    GT:AD:DP:GQ:PL    0/1:30,29:59:99:899,0,893
1    248512749    rs28377739    G    A    751.19    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.304;DB;DP=55;Dels=0.0;FS=3.998;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.173;QD=13.66;ReadPosRankSum=1.678;SNPEFF_AMINO_ACID_CHANGE=G225R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248512077_248513015;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14C36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317861    GT:AD:DP:GQ:PL    0/1:28,27:55:99:781,0,827
1    248512767    rs28545014    G    T    751.15    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.649;DB;DP=53;Dels=0.0;FS=2.556;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=14.17;ReadPosRankSum=0.187;SNPEFF_AMINO_ACID_CHANGE=D231Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248512077_248513015;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14C36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317861    GT:AD:DP:GQ:PL    0/1:27,26:53:99:781,0,849
1    248513023    rs28607995    G    A    1333.52    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.517;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.4013;MQ=60.0;MQ0=0;MQRankSum=0.87;QD=15.15;ReadPosRankSum=0.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14C36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317861    GT:AD:DP:GQ:PL    0/1:43,44:88:99:1364,0,1394
1    248513088    rs28481429    G    C    577.30    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.616;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.535;QD=16.04;ReadPosRankSum=-0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14C36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317861    GT:AD:DP:GQ:PL    0/1:17,19:36:99:607,0,602
1    248524648    rs1544176    G    A    78.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.63;ReadPosRankSum=-0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366475    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:109,0,31
1    248524683    rs1544177    C    G    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366475    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,102
1    248525638    rs34079073    CA    C    1692.80    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=7.562;DB;DP=121;FS=1.463;HRun=1;HaplotypeScore=327.3174;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=1.752;QD=13.99;ReadPosRankSum=-1.483;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_248524883_248525929;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000366475    GT:AD:DP:GQ:PL    0/1:69,52:121:99:1732,0,2910
1    248550976    rs6587467    T    G    727.27    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.794;DB;DP=62;Dels=0.0;FS=1.017;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.374;QD=11.73;ReadPosRankSum=0.435;SNPEFF_AMINO_ACID_CHANGE=C23G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248550910_248551836;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355728    GT:AD:DP:GQ:PL    0/1:35,27:62:99:757,0,1031
1    248569282    rs28667896    A    G    460.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.505;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.686;QD=10.24;ReadPosRankSum=-0.855;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366474    GT:AD:DP:GQ:PL    0/1:30,15:45:99:491,0,1011
1    248569369    rs28599722    A    G    1079.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.797;DB;DP=80;Dels=0.0;FS=6.533;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.245;QD=13.49;ReadPosRankSum=-0.313;SNPEFF_AMINO_ACID_CHANGE=H25R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248569296_248570405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366474    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1109,0,1322
1    248570440    rs6695780    G    A    375.68    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.022;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.66;MQ0=0;MQRankSum=-0.855;QD=12.52;ReadPosRankSum=-1.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366474    GT:AD:DP:GQ:PL    0/1:17,13:30:99:406,0,476
1    248570551    rs77025916    A    AGAGT    350.27    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=48.2326;IndelType=I;MQ=43.31;MQ0=0;MQRankSum=-1.92;QD=43.78;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366474    GT:AD:DP:GQ:PL    0/1:3,5:8:99:389,0,165
1    248570553    .    A    AT    155.14    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DP=8;FS=0.0;HRun=1;HaplotypeScore=53.2965;IndelType=I;MQ=43.31;MQ0=0;MQRankSum=-1.92;QD=19.39;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366474    GT:AD:DP:GQ:PL    0/1:3,5:8:99:194,0,102
1    248604614    .    A    T    129.16    MQFilter40    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DP=27;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.6651;MQ=27.01;MQ0=7;MQRankSum=-1.2;QD=4.78;ReadPosRankSum=0.044;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-407H12.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460972    GT:AD:DP:GQ:PL    0/1:17,10:27:99:159,0,232
1    248604765    rs144165631    T    A    428.23    MQFilter40    AB=0.365;AC=1;AF=0.50;AN=2;BaseQRankSum=2.17;DB;DP=52;Dels=0.0;FS=2.593;HRun=0;HaplotypeScore=1.6584;MQ=16.88;MQ0=22;MQRankSum=0.056;QD=8.24;ReadPosRankSum=-0.779;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-407H12.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460972    GT:AD:DP:GQ:PL    0/1:19,33:52:39.34:458,0,39
1    248605436    rs71642447    C    G    330.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.44;MQ0=3;QD=22.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-407H12.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460972    GT:AD:DP:GQ:PL    1/1:0,15:15:30.09:364,30,0
1    248605442    rs71642448    G    T    294.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=27.83;MQ0=3;QD=22.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-407H12.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460972    GT:AD:DP:GQ:PL    1/1:0,13:13:27.08:328,27,0
1    248651927    .    A    G    526.19    MQFilter40    AC=2;AF=1.00;AN=2;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.87;MQ0=61;QD=5.54;SNPEFF_AMINO_ACID_CHANGE=K13R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248651885_248652898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366473    GT:AD:DP:GQ:PL    1/1:0,93:95:63.02:559,63,0
1    248685253    rs9727474    T    C    1556.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.56;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=Y102;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248684916_248685964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2G6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343414    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1590,123,0
1    248722722    .    T    C    340.45    MQFilter40    AC=2;AF=1.00;AN=2;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.29;MQ0=68;QD=3.47;SNPEFF_AMINO_ACID_CHANGE=Q24R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248721784_248722797;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T29;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328570    GT:AD:DP:GQ:PL    1/1:0,98:98:42.01:373,42,0
1    248737259    rs189248971    C    G    589.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=24.21;MQ0=9;QD=18.42;SNPEFF_AMINO_ACID_CHANGE=R267P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248737022_248738080;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328782    GT:AD:DP:GQ:PL    1/1:0,32:32:57.14:623,57,0
1    248738133    .    A    G    415.08    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DP=40;Dels=0.0;FS=7.533;HRun=0;HaplotypeScore=0.0;MQ=42.21;MQ0=3;MQRankSum=-2.695;QD=10.38;ReadPosRankSum=-2.278;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328782    GT:AD:DP:GQ:PL    0/1:21,18:40:99:445,0,652
1    248789454    rs1892441    G    C    729.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330803    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:763,57,0
1    248789504    rs1892442    T    C    1706.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=Q309R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248789420_248790491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330803    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1740,129,0
1    248790075    rs1892443    A    G    1009.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=C119R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248789420_248790491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330803    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1043,81,0
1    248801944    rs143010547    TCAGCACG    T    474.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=92.3888;IndelType=D;MQ=19.61;MQ0=12;QD=16.35;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_1_248801588_248802559;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T35;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000317450    GT:AD:DP:GQ:PL    1/1:19,10:12:24.08:516,24,0
1    248802763    rs77518069    C    T    87.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317450    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
1    248813135    rs4916153    G    A    336.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.46;MQ0=1;MQRankSum=1.423;QD=28.05;ReadPosRankSum=1.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344889    GT:AD:DP:GQ:PL    1/1:2,10:12:5.43:368,5,0
1    248813827    rs1782241    T    C    128.24    MQFilter40;QDFilter2    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.074;DB;DP=79;Dels=0.0;FS=14.231;HRun=0;HaplotypeScore=0.0;MQ=18.64;MQ0=38;MQRankSum=-2.815;QD=1.62;ReadPosRankSum=3.143;SNPEFF_AMINO_ACID_CHANGE=Y120C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248813232_248814185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344889    GT:AD:DP:GQ:PL    0/1:46,32:79:99:158,0,626
1    248813901    rs144600224    A    T    53.56    MQFilter40;QDFilter2    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=0.959;DB;DP=59;Dels=0.0;FS=5.521;HRun=0;HaplotypeScore=0.0;MQ=18.32;MQ0=29;MQRankSum=-0.648;QD=0.91;ReadPosRankSum=1.063;SNPEFF_AMINO_ACID_CHANGE=A95;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248813232_248814185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344889    GT:AD:DP:GQ:PL    0/1:42,16:59:83.56:84,0,519
1    248813972    rs147604785    G    A    88.96    MQFilter40;QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=1.916;DB;DP=59;Dels=0.0;FS=17.842;HRun=1;HaplotypeScore=0.8941;MQ=20.96;MQ0=26;MQRankSum=-1.123;QD=1.51;ReadPosRankSum=-1.035;SNPEFF_AMINO_ACID_CHANGE=L72;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248813232_248814185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344889    GT:AD:DP:GQ:PL    0/1:48,11:59:99:119,0,656
1    248814052    rs28533004    T    A    453.77    MQFilter40    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.274;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.23;MQ0=9;MQRankSum=2.258;QD=8.9;ReadPosRankSum=1.831;SNPEFF_AMINO_ACID_CHANGE=K45M;SNPEFF_CODON_CHANGE=aAg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248813232_248814185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344889    GT:AD:DP:GQ:PL    0/1:28,23:51:99:484,0,571
1    248814080    rs1782242    A    C    1314.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.92;MQ0=3;QD=27.97;SNPEFF_AMINO_ACID_CHANGE=L36V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248813232_248814185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344889    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1348,105,0
1    248814126    rs28418327    G    A    811.12    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=55;Dels=0.0;FS=7.171;HRun=0;HaplotypeScore=0.0;MQ=44.83;MQ0=3;MQRankSum=0.12;QD=14.75;ReadPosRankSum=-0.028;SNPEFF_AMINO_ACID_CHANGE=N20;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248813232_248814185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2T27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344889    GT:AD:DP:GQ:PL    0/1:23,32:55:99:841,0,615
1    248845097    rs2000390    C    T    1320.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_AMINO_ACID_CHANGE=S170N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248844628_248845629;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342623    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1353,99,0
1    248845411    rs11485825    G    A    1059.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=34.16;SNPEFF_AMINO_ACID_CHANGE=S65;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248844628_248845629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14I1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342623    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1092,81,0
1    248845458    rs4509608    C    T    1910.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.83;MQ0=0;QD=35.37;SNPEFF_AMINO_ACID_CHANGE=D50N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248844628_248845629;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342623    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1943,144,0
1    248845471    rs4575113    T    C    1721.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=A45;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248844628_248845629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14I1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342623    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1754,132,0
1    248845499    rs4462184    A    G    2019.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=28.44;SNPEFF_AMINO_ACID_CHANGE=V36A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_1_248844628_248845629;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342623    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2052,162,0
1    249107065    rs75254356    C    T    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3BP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494837    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:119,9,0
1    249110906    rs4926508    G    C    1561.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.6651;MQ=59.5;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3BP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366472    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1594,126,0
1    249230837    .    G    A    58.52    MQFilter40;QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=0.56;DP=56;Dels=0.0;FS=5.441;HRun=2;HaplotypeScore=0.0;MQ=11.5;MQ0=35;MQRankSum=2.648;QD=1.04;ReadPosRankSum=-1.007;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL672183.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430973    GT:AD:DP:GQ:PL    0/1:46,10:56:88.51:89,0,108
2    45895    rs4241318    A    G    31.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.72;SNPEFF_AMINO_ACID_CHANGE=I164T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_45440_46385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM110C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327669    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
2    224919    rs2290911    A    G    935.59    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=4.287;DB;DP=80;Dels=0.0;FS=0.849;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=11.69;ReadPosRankSum=-1.28;SNPEFF_AMINO_ACID_CHANGE=S165;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_224864_224920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3YL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415006    GT:AD:DP:GQ:PL    0/1:45,35:80:99:966,0,1483
2    224970    rs2290912    C    T    1531.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3YL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431160    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1564,114,0
2    230912    rs2306060    A    C    273.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=18.24;ReadPosRankSum=-0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3YL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454318    GT:AD:DP:GQ:PL    0/1:6,9:15:99:304,0,204
2    234130    rs3748872    T    G    904.70    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=2.112;DB;DP=69;Dels=0.0;FS=1.298;HRun=0;HaplotypeScore=0.6651;MQ=59.67;MQ0=0;MQRankSum=-0.662;QD=13.11;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3YL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356150    GT:AD:DP:GQ:PL    0/1:38,31:69:99:935,0,1185
2    262553    rs7596678    T    C    1279.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.94;MQ0=0;QD=37.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3YL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356150    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1313,99,0
2    264019    rs7595075    C    A    79.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.96;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3YL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402632    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:110,0,27
2    264895    rs4854300    G    C    764.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_264872_265007;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272065    GT:AD:DP:GQ:PL    1/1:0,22:22:63.18:797,63,0
2    271797    rs59937473    G    A    577.04    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=42;Dels=0.0;FS=1.478;HRun=3;HaplotypeScore=0.9665;MQ=58.33;MQ0=0;MQRankSum=1.056;QD=13.74;ReadPosRankSum=-1.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272065    GT:AD:DP:GQ:PL    0/1:19,22:42:99:607,0,623
2    271998    rs34887991    CA    C    153.35    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=0.121;DB;DP=56;FS=2.454;HRun=16;HaplotypeScore=395.037;IndelType=D;MQ=55.27;MQ0=0;MQRankSum=0.275;QD=2.74;ReadPosRankSum=1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272065    GT:AD:DP:GQ:PL    0/1:26,17:56:99:192,0,375
2    272203    rs11553746    C    T    915.64    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.932;DB;DP=52;Dels=0.0;FS=3.949;HRun=0;HaplotypeScore=0.0;MQ=57.75;MQ0=0;MQRankSum=0.988;QD=17.61;ReadPosRankSum=1.678;SNPEFF_AMINO_ACID_CHANGE=T53I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_272192_273155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405233    GT:AD:DP:GQ:PL    0/1:21,31:52:99:946,0,642
2    276908    rs7568288    C    G    660.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405233    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:694,54,0
2    276942    rs7573495    A    G    189.32    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.157;QD=7.89;ReadPosRankSum=-0.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405233    GT:AD:DP:GQ:PL    0/1:15,9:24:99:219,0,442
2    277003    rs79716074    A    G    485.73    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.748;DB;DP=48;Dels=0.0;FS=1.129;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.072;QD=10.12;ReadPosRankSum=0.61;SNPEFF_AMINO_ACID_CHANGE=Q106R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_276980_277085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272065    GT:AD:DP:GQ:PL    0/1:26,22:48:99:516,0,766
2    283231    rs11452150    A    AT    538.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=7;HaplotypeScore=42.4729;IndelType=I;MQ=60.57;MQ0=0;QD=28.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272065    GT:AD:DP:GQ:PL    1/1:3,16:19:48.15:580,48,0
2    672976    rs58078949    A    G    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418447    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:71,0,70
2    676457    rs2293082    G    C    74.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281017    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
2    676782    rs73153267    C    A    33.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.39;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281017    GT:AD:DP:GQ:PL    0/1:2,2:4:42.32:64,0,42
2    677213    rs3749138    G    A    289.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281017    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
2    677295    rs3210390    C    T    93.65    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=5.51;ReadPosRankSum=-0.791;SNPEFF_AMINO_ACID_CHANGE=V17;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_677289_677439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281017    GT:AD:DP:GQ:PL    0/1:12,5:17:99:124,0,329
2    905393    rs113854668    C    G    1268.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=49.18;MQ0=1;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1302,108,0
2    905399    rs111252196    T    G    1024.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.453;MQ=48.27;MQ0=1;MQRankSum=1.634;QD=28.46;ReadPosRankSum=-1.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    1/1:2,34:36:84.23:1057,84,0
2    905427    rs113411033    C    G    347.83    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.83;MQ0=4;MQRankSum=2.073;QD=18.31;ReadPosRankSum=-2.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    1/1:4,15:19:30.09:381,30,0
2    905492    rs62103943    T    A    588.12    MQFilter40    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=84;Dels=0.0;FS=29.728;HRun=0;HaplotypeScore=2.2019;MQ=29.43;MQ0=21;MQRankSum=3.704;QD=7.0;ReadPosRankSum=-5.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:36,25:84:99:618,0,458
2    905497    rs111536265    C    T    413.92    MQFilter40    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.454;DB;DP=91;Dels=0.0;FS=22.879;HRun=1;HaplotypeScore=3.034;MQ=30.79;MQ0=21;MQRankSum=-2.839;QD=4.55;ReadPosRankSum=5.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:54,37:91:99:444,0,849
2    905525    rs111963287    T    G    1200.49    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.303;DB;DP=143;Dels=0.0;FS=43.405;HRun=0;HaplotypeScore=2.2421;MQ=30.74;MQ0=34;MQRankSum=5.438;QD=8.4;ReadPosRankSum=2.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:92,51:143:99:1230,0,559
2    905576    rs12470098    T    G    85.35    MQFilter40;QDFilter2    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.235;DB;DP=116;Dels=0.0;FS=4.731;HRun=1;HaplotypeScore=3.2304;MQ=30.7;MQ0=31;MQRankSum=-5.963;QD=0.74;ReadPosRankSum=3.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:52,63:116:99:115,0,1174
2    905581    rs113738897    C    T    788.85    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.677;DB;DP=120;Dels=0.0;FS=7.803;HRun=1;HaplotypeScore=3.2304;MQ=28.36;MQ0=36;MQRankSum=4.492;QD=6.57;ReadPosRankSum=-2.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:70,50:120:99:819,0,325
2    905595    rs28716017    G    C    124.45    MQFilter40;QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.434;DB;DP=124;Dels=0.0;FS=1.624;HRun=0;HaplotypeScore=5.1368;MQ=23.45;MQ0=48;MQRankSum=1.52;QD=1.0;ReadPosRankSum=-0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:103,20:124:99:154,0,890
2    905627    .    G    A    45.43    MQFilter40;QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=0.856;DP=92;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=8.821;MQ=16.21;MQ0=44;MQRankSum=1.896;QD=0.49;ReadPosRankSum=1.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:79,12:92:75.42:75,0,533
2    905634    rs13400348    A    C    184.55    MQFilter40    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=2.021;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.6531;MQ=17.6;MQ0=43;MQRankSum=-2.376;QD=2.15;ReadPosRankSum=2.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:39,47:86:99:215,0,498
2    905651    rs113734895    T    G    49.46    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.114;DB;DP=110;Dels=0.0;FS=2.506;HRun=0;HaplotypeScore=24.6209;MQ=19.9;MQ0=44;MQRankSum=-0.411;QD=0.45;ReadPosRankSum=-2.651;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:94,16:110:79.46:79,0,1100
2    905652    .    T    TTCCTCCCGGCCTCCTCGCCTGCACTGCGTCTGGTGTTTCAGT    2459.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.295;DP=56;FS=0.0;HRun=0;HaplotypeScore=1537.9664;IndelType=I;MQ=20.37;MQ0=45;MQRankSum=1.454;QD=21.21;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    1/1:76,21:56:30.44:2502,30,0
2    905687    rs13395348    C    G    341.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.8692;MQ=18.87;MQ0=41;QD=4.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    1/1:0,70:70:33.04:375,33,0
2    905693    rs74861779    T    G    371.81    MQFilter40    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.46;MQ0=38;MQRankSum=-0.927;QD=4.77;ReadPosRankSum=1.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:27,51:78:99:402,0,147
2    905736    rs11891241    A    T    2322.40    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.78;DB;DP=143;Dels=0.0;FS=3.571;HRun=1;HaplotypeScore=2.3823;MQ=28.23;MQ0=43;MQRankSum=-0.209;QD=16.24;ReadPosRankSum=-0.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    1/1:1,142:143:99:2355,192,0
2    905763    rs71337696    G    C    436.98    MQFilter40    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.154;DB;DP=192;Dels=0.0;FS=1.909;HRun=0;HaplotypeScore=3.8909;MQ=31.97;MQ0=45;MQRankSum=-2.461;QD=2.28;ReadPosRankSum=4.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:122,69:192:99:467,0,2280
2    905777    rs71337697    T    G    176.57    MQFilter40;QDFilter2    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.069;DB;DP=222;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=32.78;MQ0=45;MQRankSum=-3.673;QD=0.8;ReadPosRankSum=-1.145;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC113607.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427019    GT:AD:DP:GQ:PL    0/1:175,47:222:99:207,0,3108
2    1079130    rs4971429    G    A    740.59    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=45;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;MQRankSum=-0.057;QD=16.46;ReadPosRankSum=-0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    0/1:19,26:45:99:771,0,601
2    1079132    rs4971430    G    A    763.12    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=4.07;DB;DP=45;Dels=0.0;FS=1.981;HRun=0;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;MQRankSum=-1.182;QD=16.96;ReadPosRankSum=-0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    0/1:19,26:45:99:793,0,516
2    1079143    rs4971431    A    G    1818.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1851,135,0
2    1079320    rs4971432    C    T    2821.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=31.35;SNPEFF_AMINO_ACID_CHANGE=G63;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1079204_1079341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2854,220,0
2    1079442    rs35463228    G    A    533.10    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.173;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=14.41;ReadPosRankSum=0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    0/1:17,20:37:99:563,0,559
2    1093965    rs11127460    G    A    6152.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DB;DP=185;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3893;MQ=59.75;MQ0=0;MQRankSum=-0.729;QD=33.26;ReadPosRankSum=-0.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    1/1:1,183:185:99:6153,472,0
2    1133188    rs71392567    G    GCACA    821.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=39.5237;IndelType=I;MQ=57.23;MQ0=0;QD=63.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:864,36,0
2    1241592    rs146197111    C    T    170.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
2    1250878    rs28622255    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494178    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    1319892    rs4927634    A    T    415.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:448,33,0
2    1320143    rs4927635    C    T    2943.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=T368M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1320037_1320147;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407292    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2977,223,0
2    1320300    rs35466197    A    G    143.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=20.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SNTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308624    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:176,15,0
2    1418192    rs9678281    C    G    92.84    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=8.44;ReadPosRankSum=-1.034;SNPEFF_AMINO_ACID_CHANGE=L4;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1418180_1418274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:7,4:11:99:123,0,175
2    1426787    rs2276701    G    A    260.20    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.965;QD=18.59;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:6,8:14:99:290,0,177
2    1437163    rs1473936    A    C    505.31    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=1.157;QD=17.42;ReadPosRankSum=-1.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:14,15:29:99:535,0,473
2    1437410    rs4927578    C    T    370.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.949;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.533;QD=17.63;ReadPosRankSum=0.959;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:9,12:21:99:400,0,215
2    1440299    rs28909386    A    G    157    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=26.17;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:1,5:6:20.52:187,0,21
2    1442476    rs1969248    T    C    218.72    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.393;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=61.07;MQ0=0;MQRankSum=-1.393;QD=21.87;ReadPosRankSum=-1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:1,9:10:18.57:249,0,19
2    1442551    rs3036132    ATTTT    A    683.77    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.901;DB;DP=42;FS=2.971;HRun=17;HaplotypeScore=341.718;IndelType=D;MQ=53.28;MQ0=0;MQRankSum=0.245;QD=16.28;ReadPosRankSum=0.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:11,23:42:99:723,0,636
2    1457364    rs2070881    A    G    310.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:344,27,0
2    1459806    rs4927610    A    G    323.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423320    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:357,30,0
2    1460004    rs4927611    G    T    556.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=A186S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1459848_1460054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422464    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:590,45,0
2    1460140    rs4927612    A    G    117.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423320    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
2    1488668    rs6715129    T    C    848.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:882,69,0
2    1488831    rs28911469    A    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    1491497    rs6727192    T    C    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    1497442    rs9679267    A    G    59.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=5.93;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:6,4:10:89.31:89,0,181
2    1497803    rs1126797    C    T    583.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=40;Dels=0.0;FS=2.673;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=14.59;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=D140;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1497574_1497811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000469607    GT:AD:DP:GQ:PL    0/1:20,20:40:99:614,0,587
2    1499728    rs2276704    C    T    69.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.7;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329066    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,185
2    1499899    rs732608    C    T    379.63    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.441;QD=9.04;ReadPosRankSum=-0.067;SNPEFF_AMINO_ACID_CHANGE=P189;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1499761_1499969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000469607    GT:AD:DP:GQ:PL    0/1:25,17:42:99:410,0,619
2    1499927    rs732609    A    C    373.46    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.862;DB;DP=37;Dels=0.0;FS=1.341;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.716;QD=10.09;ReadPosRankSum=-0.907;SNPEFF_AMINO_ACID_CHANGE=T199P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1499761_1499969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000469607    GT:AD:DP:GQ:PL    0/1:21,16:37:99:403,0,597
2    1520676    rs1126799    T    C    348.31    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.846;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.564;QD=15.14;ReadPosRankSum=0.423;SNPEFF_AMINO_ACID_CHANGE=V277A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1520655_1520754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000469607    GT:AD:DP:GQ:PL    0/1:7,16:23:99:378,0,218
2    1544617    rs12615819    G    A    1137.92    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.835;DB;DP=97;Dels=0.0;FS=0.841;HRun=0;HaplotypeScore=1.6624;MQ=59.76;MQ0=0;MQRankSum=0.845;QD=11.73;ReadPosRankSum=1.656;SNPEFF_AMINO_ACID_CHANGE=R842H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1544366_1547483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422464    GT:AD:DP:GQ:PL    0/1:55,42:97:99:1168,0,1463
2    1546327    rs1042589    C    G    1045.58    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.481;DB;DP=105;Dels=0.0;FS=3.743;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.186;QD=9.96;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=P918R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1546193_1546498;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337415    GT:AD:DP:GQ:PL    0/1:63,42:105:99:1076,0,1846
2    1546361    rs28915689    G    T    1407.35    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.058;QD=15.3;ReadPosRankSum=-0.012;SNPEFF_AMINO_ACID_CHANGE=G929;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1546193_1546498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337415    GT:AD:DP:GQ:PL    0/1:38,54:92:99:1437,0,1148
2    1642369    rs6732413    A    C    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477093    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
2    1642453    rs6729173    T    C    311.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477093    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:345,27,0
2    1642537    rs6729142    T    C    1099.62    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.96;MQ0=0;QD=24.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477093    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1133,117,0
2    1642539    rs6742040    C    T    1185.89    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.18;MQ0=0;QD=26.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477093    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1219,126,0
2    1642545    rs6742039    C    G    1549.43    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.59;MQ0=0;QD=30.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477093    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1582,135,0
2    1647171    rs6730800    T    C    2007.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.2;MQ0=0;QD=30.89;SNPEFF_AMINO_ACID_CHANGE=V1307;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1647140_1647348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252804    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2041,159,0
2    1651842    rs11685976    C    A    1943.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=38.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465809    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1976,150,0
2    1652660    rs3811613    G    A    333.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=N964;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1651944_1653447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252804    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:366,27,0
2    1652822    rs1863135    T    G    847.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.28;SNPEFF_AMINO_ACID_CHANGE=I910;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1651944_1653447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252804    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:881,69,0
2    1664508    rs2241456    G    C    54.58    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.96;ReadPosRankSum=1.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467191    GT:AD:DP:GQ:PL    0/1:7,4:11:84.57:85,0,212
2    1664654    rs17841813    A    G    2334.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_AMINO_ACID_CHANGE=N612;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1664653_1664809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252804    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2367,187,0
2    1667267    rs2241455    C    G    646.14    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.917;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.019;QD=19.58;ReadPosRankSum=0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467191    GT:AD:DP:GQ:PL    0/1:12,21:33:99:676,0,374
2    1667310    rs12475392    G    A    1024.04    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=5.248;DB;DP=67;Dels=0.0;FS=3.191;HRun=0;HaplotypeScore=0.9832;MQ=58.96;MQ0=0;MQRankSum=-0.633;QD=15.28;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467191    GT:AD:DP:GQ:PL    0/1:33,34:67:99:1054,0,886
2    1677266    rs918953    A    C    482.06    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.176;QD=16.62;ReadPosRankSum=-0.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425171    GT:AD:DP:GQ:PL    0/1:11,18:29:99:512,0,356
2    1683879    .    T    G    46.48    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DP=11;Dels=0.0;FS=5.643;HRun=1;HaplotypeScore=0.0;MQ=49.69;MQ0=0;MQRankSum=-1.106;QD=4.23;ReadPosRankSum=-1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485177    GT:AD:DP:GQ:PL    0/1:8,3:11:76.47:76,0,257
2    1683889    .    A    G    58.13    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DP=16;Dels=0.0;FS=5.051;HRun=1;HaplotypeScore=0.0;MQ=51.48;MQ0=0;MQRankSum=-0.113;QD=3.63;ReadPosRankSum=-1.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485177    GT:AD:DP:GQ:PL    0/1:11,5:16:88.12:88,0,371
2    1683923    rs72763569    G    T    247.42    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=23;Dels=0.0;FS=3.882;HRun=1;HaplotypeScore=4.9244;MQ=54.22;MQ0=0;MQRankSum=-0.401;QD=10.76;ReadPosRankSum=0.668;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485177    GT:AD:DP:GQ:PL    0/1:14,9:23:99:277,0,429
2    1805748    rs2288180    C    T    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295067    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    1813057    rs12988270    G    T    446.85    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.284;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.196;QD=15.41;ReadPosRankSum=-1.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295067    GT:AD:DP:GQ:PL    0/1:14,15:29:99:477,0,482
2    1855567    rs4553849    C    A    414.72    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.172;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=13.38;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295067    GT:AD:DP:GQ:PL    0/1:18,13:31:99:445,0,590
2    1855686    rs4286314    C    A    167.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295067    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
2    1855717    rs7421372    A    G    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295067    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    1890070    rs4241294    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295067    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    1926437    rs1529667    G    T    2087.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DB;DP=62;Dels=0.0;FS=4.122;HRun=0;HaplotypeScore=1.6316;MQ=59.02;MQ0=0;MQRankSum=1.006;QD=33.67;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=P316;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_1926064_1927035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295067    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2120,131,0
2    3193040    rs17682    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435721    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    3196040    rs2242084    A    G    147.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435721    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
2    3212704    rs7595702    C    A    400.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=30.81;SNPEFF_AMINO_ACID_CHANGE=G181*;SNPEFF_CODON_CHANGE=Gga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_2_3211575_3212728;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000443925    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:433,33,0
2    3212817    rs12467123    C    T    241.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382125    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
2    3217777    rs11127386    A    C    215.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=50.65;MQ0=0;QD=27.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406835    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:249,21,0
2    3217794    rs10865535    T    C    417.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=29.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406835    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:450,36,0
2    3217908    rs11682452    G    C    1824.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406835    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1858,135,0
2    3261195    rs148305782    G    C    409.39    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.443;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.059;QD=12.41;ReadPosRankSum=-0.771;SNPEFF_AMINO_ACID_CHANGE=A124;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_3261070_3261226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398659    GT:AD:DP:GQ:PL    0/1:16,17:33:99:439,0,423
2    3322470    rs62121537    G    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382125    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
2    3322555    rs62121538    T    C    303.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.815;DB;DP=30;Dels=0.0;FS=13.453;HRun=1;HaplotypeScore=1.4725;MQ=59.23;MQ0=0;MQRankSum=0.233;QD=10.13;ReadPosRankSum=-0.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382125    GT:AD:DP:GQ:PL    0/1:18,12:30:99:334,0,658
2    3322797    rs12618407    C    A    999.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382125    GT:AD:DP:GQ:PL    1/1:0,29:29:78.23:1032,78,0
2    3322905    rs34135516    A    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382125    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    3322907    rs9309705    A    G    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382125    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    3342009    rs3811617    T    C    415.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382125    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:448,36,0
2    3358458    rs146001084    ATTATGAAGTTAGAT    A    1549.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=239.1952;IndelType=D;MQ=37.15;MQ0=0;QD=86.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382125    GT:AD:DP:GQ:PL    1/1:4,14:18:39.13:1592,39,0
2    3392075    rs10865541    T    C    326.64    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.525;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=55.0;MQ0=0;MQRankSum=-0.197;QD=13.61;ReadPosRankSum=0.525;SNPEFF_AMINO_ACID_CHANGE=F210;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_3391470_3392441;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304601    GT:AD:DP:GQ:PL    0/1:11,13:24:99:357,0,276
2    3405851    rs62120499    A    G    396.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304601    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:430,33,0
2    3425514    rs7558487    G    C    35.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.69;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304601    GT:AD:DP:GQ:PL    0/1:1,2:3:26.23:65,0,26
2    3428508    rs10166880    T    G    755.49    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.165;DB;DP=50;Dels=0.0;FS=10.075;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.165;QD=15.11;ReadPosRankSum=0.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304601    GT:AD:DP:GQ:PL    0/1:24,26:50:99:785,0,723
2    3523324    rs10179340    A    G    56.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382093    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:87,6,0
2    3599700    rs7563960    G    T    414.96    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.308;DB;DP=27;Dels=0.0;FS=4.925;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.513;QD=15.37;ReadPosRankSum=1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNASEH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315212    GT:AD:DP:GQ:PL    0/1:13,14:27:99:445,0,379
2    3623540    rs3087873    A    G    174.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.276;QD=12.47;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304921    GT:AD:DP:GQ:PL    0/1:7,7:14:99:205,0,254
2    3625175    rs72767176    T    C    253.96    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=19.54;ReadPosRankSum=1.855;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479123    GT:AD:DP:GQ:PL    0/1:5,8:13:99:284,0,169
2    3625179    rs72767177    C    T    239.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=19.94;ReadPosRankSum=1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479123    GT:AD:DP:GQ:PL    0/1:4,8:12:99:269,0,130
2    3627648    rs7576238    G    C    1012.83    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=83;Dels=0.0;FS=7.391;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.967;QD=12.2;ReadPosRankSum=-0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479123    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1043,0,1389
2    3673648    rs10170348    G    A    1900.38    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=1.633;DB;DP=122;Dels=0.0;FS=1.439;HRun=2;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=0.553;QD=15.58;ReadPosRankSum=-0.406;SNPEFF_AMINO_ACID_CHANGE=K53;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_3673604_3673682;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000236693    GT:AD:DP:GQ:PL    0/1:56,66:122:99:1930,0,1697
2    3685046    rs3811528    T    C    133.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236693    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:166,15,0
2    3685074    rs3811527    A    G    358.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236693    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:391,36,0
2    3718692    rs13409104    C    T    209.95    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=17.5;ReadPosRankSum=0.244;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_3718686_3718780;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:5,7:12:99:240,0,144
2    3721632    rs13390724    G    A    100.11    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=9.1;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:7,4:11:99:130,0,253
2    3721729    rs12105179    A    G    371.21    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.989;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5807;MQ=60.0;MQ0=0;MQRankSum=-0.419;QD=9.28;ReadPosRankSum=0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:25,15:40:99:401,0,788
2    3725964    rs72769388    C    T    178.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.71;QD=12.77;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:8,6:14:99:209,0,281
2    3726163    rs2043080    T    C    923.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    1/1:0,29:30:72.22:956,72,0
2    3729254    rs13426642    C    T    404.93    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=41;Dels=0.0;FS=5.041;HRun=0;HaplotypeScore=1.81;MQ=58.98;MQ0=0;MQRankSum=0.678;QD=9.88;ReadPosRankSum=0.852;SNPEFF_AMINO_ACID_CHANGE=T110I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_3729224_3729303;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:25,16:41:99:435,0,728
2    3730340    rs6725953    C    T    467.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.52;MQ0=1;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:500,39,0
2    3730358    rs6714665    G    A    81.95    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.85;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=51.52;MQ0=1;MQRankSum=0.667;QD=4.82;ReadPosRankSum=-0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:12,5:17:99:112,0,330
2    3730362    rs6714670    G    A    71.74    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=51.52;MQ0=1;MQRankSum=0.303;QD=4.22;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:12,5:17:99:102,0,358
2    3730877    rs6732295    A    T    118.75    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=8.48;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:9,5:14:99:149,0,329
2    3744728    rs2303902    A    G    82.13    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.53;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:112,0,31
2    3745211    rs112134730    G    A    369.29    HaplotypeScoreFilter13    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.198;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=27.2616;MQ=58.78;MQ0=0;MQRankSum=-0.783;QD=12.73;ReadPosRankSum=-1.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:15,14:29:99:399,0,399
2    3749084    rs11689171    T    C    519.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.057;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=-1.187;QD=16.23;ReadPosRankSum=2.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:16,16:32:99:549,0,528
2    3749151    rs66473381    GGAA    G    2442.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=282.6572;IndelType=D;MQ=57.87;MQ0=0;QD=40.7;SNPEFF_AMINO_ACID_CHANGE=E301-;SNPEFF_CODON_CHANGE=gaa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_2_3749102_3749226;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    1/1:7,53:60:99:2484,163,0
2    3749267    rs11681270    G    A    609.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.272;DB;DP=64;Dels=0.0;FS=2.379;HRun=0;HaplotypeScore=0.0;MQ=56.29;MQ0=0;MQRankSum=-0.828;QD=9.52;ReadPosRankSum=-0.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252505    GT:AD:DP:GQ:PL    0/1:40,24:64:99:639,0,1180
2    3756073    rs17505481    G    A    186.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:220,18,0
2    3774436    rs357940    C    T    89.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
2    3774448    rs12711970    T    C    188.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:221,18,0
2    3774519    rs357941    T    C    456.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:490,36,0
2    3774788    rs79382070    C    T    238.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:272,21,0
2    3800383    rs357969    C    T    945.59    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.961;DB;DP=89;Dels=0.0;FS=2.916;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=10.62;ReadPosRankSum=0.987;SNPEFF_AMINO_ACID_CHANGE=G155;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_3800353_3800490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    0/1:54,35:89:99:976,0,1427
2    3800496    rs357968    C    T    438.53    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.06;DB;DP=40;Dels=0.0;FS=3.655;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.195;QD=10.96;ReadPosRankSum=0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399143    GT:AD:DP:GQ:PL    0/1:25,15:40:99:469,0,666
2    3815250    rs10180257    A    G    391.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.564;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.769;QD=15.07;ReadPosRankSum=0.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399143    GT:AD:DP:GQ:PL    0/1:13,13:26:99:422,0,451
2    3815477    rs17017989    T    A    933.49    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=80;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=3.4292;MQ=59.42;MQ0=0;MQRankSum=1.104;QD=11.67;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399143    GT:AD:DP:GQ:PL    0/1:46,34:80:99:963,0,1418
2    3816733    rs77165837    C    T    32.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.79;ReadPosRankSum=0.736;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000537457    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:62,0,33
2    3826324    rs13005405    C    T    378.03    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.803;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=19.9;ReadPosRankSum=1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    0/1:7,12:19:99:408,0,213
2    3826387    rs13021385    T    C    384.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.67;MQ0=0;MQRankSum=0.997;QD=10.97;ReadPosRankSum=-0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    0/1:20,15:35:99:414,0,556
2    3826597    rs13035992    G    A    96.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=13.72;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423741    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,103
2    6112516    rs11691189    C    T    48.33    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.65;QD=3.22;ReadPosRankSum=0.217;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC073479.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391666    GT:AD:DP:GQ:PL    0/1:12,3:15:78.32:78,0,450
2    6872399    rs112317122    G    GA    966.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=3;HaplotypeScore=54.2821;IndelType=I;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC079923.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382045    GT:AD:DP:GQ:PL    1/1:2,24:26:72.24:1009,72,0
2    6991551    rs79692126    G    A    294.04    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.065;DB;DP=19;Dels=0.0;FS=2.304;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=15.48;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256722    GT:AD:DP:GQ:PL    0/1:8,11:19:99:324,0,200
2    7001233    rs3085147    ACG    A    548.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=200.7652;IndelType=D;MQ=36.86;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470479    GT:AD:DP:GQ:PL    1/1:5,11:16:48.15:590,48,0
2    7001249    .    ACACACACACC    A    977.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.1;DP=18;FS=0.0;HRun=0;HaplotypeScore=259.2714;IndelType=D;MQ=38.13;MQ0=0;MQRankSum=-2.282;QD=54.29;ReadPosRankSum=1.917;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470479    GT:AD:DP:GQ:PL    1/1:11,7:18:33.97:1019,34,0
2    7003879    rs2712039    G    A    131.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256722    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
2    7003902    rs2712040    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256722    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    7005069    rs2595172    C    T    120.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256722    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
2    7005369    rs11678810    A    G    92.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.11;SNPEFF_AMINO_ACID_CHANGE=C153;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_7005153_7005827;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256722    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
2    7017903    rs10182815    A    G    396.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RSAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474872    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:429,33,0
2    7027323    rs9917321    T    A    469.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RSAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442639    GT:AD:DP:GQ:PL    1/1:0,20:20:39.13:503,39,0
2    7137067    rs364891    A    G    1022.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=T4A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_7137047_7137192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320892    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1055,78,0
2    7137317    rs378548    G    A    131.15    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=11.92;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320892    GT:AD:DP:GQ:PL    0/1:5,6:11:99:161,0,180
2    7154632    rs309325    T    C    2584.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=T61;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_7154585_7154689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320892    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2618,208,0
2    7160490    rs309306    C    T    136.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320892    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:169,15,0
2    7164483    rs6709878    C    T    567.52    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=44;Dels=0.0;FS=1.226;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=-0.474;QD=12.9;ReadPosRankSum=-0.711;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471060    GT:AD:DP:GQ:PL    0/1:25,19:44:99:598,0,672
2    7164578    rs376219    A    G    710.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.252;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.63;QD=14.2;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=E196;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_7164500_7164647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320892    GT:AD:DP:GQ:PL    0/1:25,25:50:99:740,0,861
2    7164746    rs392709    C    G    350.01    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.564;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.549;QD=18.42;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471060    GT:AD:DP:GQ:PL    0/1:7,12:19:99:380,0,177
2    7164812    rs392409    C    G    69.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=8.67;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471060    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,181
2    7170388    rs72180357    CTGTGTG    C    275.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=159.1458;IndelType=D;MQ=52.29;MQ0=0;QD=13.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320892    GT:AD:DP:GQ:PL    1/1:16,5:21:20.09:317,20,0
2    7170517    rs34349013    G    T    81.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.42;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320892    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:112,0,30
2    7540646    rs5829105    C    CA    261.70    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.772;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=54.7911;IndelType=I;MQ=60.72;MQ0=0;MQRankSum=1.096;QD=17.45;ReadPosRankSum=-0.993;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,8:15:99:301,0,215
2    7540695    rs2163257    C    G    196.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.866;QD=19.6;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,6:10:99:226,0,138
2    8743476    rs12692363    G    C    2134.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.62;MQ0=0;QD=35.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC011747.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425442    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2168,160,0
2    8822912    rs34272236    A    AC    397.86    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.911;DB;DP=50;FS=9.645;HRun=0;HaplotypeScore=361.5687;IndelType=I;MQ=55.49;MQ0=0;MQRankSum=3.295;QD=7.96;ReadPosRankSum=-2.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234091    GT:AD:DP:GQ:PL    0/1:33,17:50:99:437,0,271
2    8870814    rs6431959    A    G    794.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471685    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:827,66,0
2    8876797    rs2067910    A    G    214.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
2    8887551    rs4669335    C    A    133.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
2    8887910    rs1978841    A    T    290.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
2    8898089    rs4669336    A    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    8910736    rs57679000    GT    G    45.16    QDFilter2    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=27;FS=0.0;HRun=16;HaplotypeScore=174.5437;IndelType=D;MQ=53.65;MQ0=0;MQRankSum=-0.347;QD=1.67;ReadPosRankSum=-1.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    0/1:14,11:27:84.19:84,0,224
2    8910987    rs12476359    A    T    746.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=27.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    1/1:0,26:27:69.19:779,69,0
2    8911010    rs17630893    T    C    660.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:694,51,0
2    8916847    rs4669338    A    T    1229.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    1/1:0,33:33:96.27:1263,96,0
2    8943291    rs2356658    G    A    463.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIDINS220;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256707    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:497,39,0
2    8998624    rs10929559    A    G    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473432    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
2    9008502    rs114860060    T    C    264.45    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.804;QD=10.17;ReadPosRankSum=-0.693;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474341    GT:AD:DP:GQ:PL    0/1:15,11:26:99:294,0,534
2    9017034    rs998967    T    C    186.88    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.05;MQ0=0;MQRankSum=0.689;QD=15.57;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462696    GT:AD:DP:GQ:PL    0/1:5,7:12:99:217,0,162
2    9419411    rs10193043    G    A    528.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:562,42,0
2    9419415    rs10170149    C    T    599.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:632,48,0
2    9460234    rs17522163    G    A    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
2    9463454    rs12475160    C    T    696.93    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=4.726;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.012;QD=15.15;ReadPosRankSum=1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    0/1:21,25:46:99:727,0,552
2    9463635    rs13384605    T    C    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.48;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    0/1:2,2:4:67.59:68,0,68
2    9475337    rs4392227    A    G    359.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=22;Dels=0.0;FS=3.222;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.116;QD=16.34;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    0/1:11,11:22:99:390,0,385
2    9484542    rs6724103    C    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
2    9484561    rs3841085    TAAAA    T    346.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=10;HaplotypeScore=73.1943;IndelType=D;MQ=47.03;MQ0=0;QD=38.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:388,24,0
2    9491017    rs4669385    C    T    1098.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=L368;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_9490937_9491024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1132,84,0
2    9496291    rs2709591    T    C    822.75    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.87;DB;DP=56;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.734;MQ=59.59;MQ0=0;MQRankSum=1.017;QD=14.69;ReadPosRankSum=-0.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    0/1:27,29:56:99:853,0,907
2    9528536    rs2715860    G    C    433.94    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.889;DB;DP=30;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=-1.309;QD=14.46;ReadPosRankSum=-1.185;SNPEFF_AMINO_ACID_CHANGE=E748D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_9528423_9528675;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    0/1:14,16:30:99:464,0,465
2    9547171    rs10929579    G    A    40.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.11;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    0/1:2,2:4:58.84:70,0,59
2    9547944    rs35336030    A    G    42.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281419    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:73,0,30
2    9552379    rs10929581    C    T    377.35    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.408;DB;DP=25;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=10.9969;MQ=57.41;MQ0=0;MQRankSum=-0.626;QD=15.09;ReadPosRankSum=-0.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460001    GT:AD:DP:GQ:PL    0/1:13,12:25:99:407,0,305
2    9552383    rs112462761    A    AT    207.39    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.75;DB;DP=27;FS=21.065;HRun=12;HaplotypeScore=134.7104;IndelType=I;MQ=57.14;MQ0=0;MQRankSum=-0.903;QD=7.68;ReadPosRankSum=-1.341;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460001    GT:AD:DP:GQ:PL    0/1:15,12:27:99:246,0,231
2    9554075    rs10199974    T    G    111.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.53;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238091    GT:AD:DP:GQ:PL    0/1:2,4:6:66.35:141,0,66
2    9554255    rs10208358    G    A    768.41    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=3.931;DB;DP=68;Dels=0.0;FS=1.049;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.773;QD=11.3;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238091    GT:AD:DP:GQ:PL    0/1:39,29:68:99:798,0,1187
2    9554280    rs12474647    A    T    1017.22    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.51;DB;DP=82;Dels=0.0;FS=7.944;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.263;QD=12.41;ReadPosRankSum=0.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238091    GT:AD:DP:GQ:PL    0/1:46,35:82:99:1047,0,1520
2    9554461    rs10185646    C    A    191.55    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=18;Dels=0.0;FS=4.102;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.815;QD=10.64;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238091    GT:AD:DP:GQ:PL    0/1:11,7:18:99:222,0,390
2    9569972    rs7589401    A    T    356.81    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.032;QD=17.84;ReadPosRankSum=1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238112    GT:AD:DP:GQ:PL    0/1:9,11:20:99:387,0,271
2    9571054    rs2002044    C    T    100.04    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=33;Dels=0.0;FS=8.3;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=3.03;ReadPosRankSum=-0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238112    GT:AD:DP:GQ:PL    0/1:24,9:33:99:130,0,870
2    9572888    rs12478467    A    T    49.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=5.53;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475482    GT:AD:DP:GQ:PL    0/1:5,4:9:79.75:80,0,182
2    9576553    rs6432003    T    C    352.35    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.201;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.745;QD=18.54;ReadPosRankSum=2.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475482    GT:AD:DP:GQ:PL    0/1:6,13:19:99:382,0,195
2    9580540    rs111411247    G    GT    267.71    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=36.8358;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=19.12;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238112    GT:AD:DP:GQ:PL    0/1:6,8:14:99:307,0,147
2    9588537    rs71389246    ACTT    A    284.39    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=3.73;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=90.7218;IndelType=D;MQ=57.81;MQ0=0;MQRankSum=-0.688;QD=12.93;ReadPosRankSum=-1.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489629    GT:AD:DP:GQ:PL    0/1:15,7:22:99:323,0,822
2    9597171    rs35810297    T    C    647.27    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.488;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=-1.706;QD=11.77;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238112    GT:AD:DP:GQ:PL    0/1:31,24:55:99:677,0,1034
2    9614523    rs13411809    G    A    132.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.0;QD=13.22;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238112    GT:AD:DP:GQ:PL    0/1:4,6:10:99:162,0,114
2    9621683    rs2276337    G    A    82.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.65;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470914    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:113,0,30
2    9624794    rs17524376    T    A    42.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.71;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310823    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:73,0,33
2    9630231    rs6705408    C    T    112.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.11;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470914    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,144
2    9631340    rs10495562    T    C    293.25    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=23;Dels=0.0;FS=6.193;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.023;QD=12.75;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470914    GT:AD:DP:GQ:PL    0/1:13,10:23:99:323,0,444
2    9633137    rs4622692    T    G    174.92    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=12.49;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470914    GT:AD:DP:GQ:PL    0/1:6,7:14:99:205,0,162
2    9634100    rs883399    G    A    75.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.03;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470914    GT:AD:DP:GQ:PL    0/1:2,3:5:59.68:105,0,60
2    9634856    rs1048610    A    G    937.79    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.552;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=59.31;MQ0=0;MQRankSum=0.989;QD=15.37;ReadPosRankSum=0.267;SNPEFF_AMINO_ACID_CHANGE=S608;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_9634766_9634896;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310823    GT:AD:DP:GQ:PL    0/1:29,32:61:99:968,0,846
2    9642478    rs34367192    C    T    414.43    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.832;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=59.32;MQ0=0;MQRankSum=0.332;QD=12.19;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310823    GT:AD:DP:GQ:PL    0/1:20,14:34:99:444,0,548
2    9642521    rs13031491    C    T    101.08    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.239;QD=7.78;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310823    GT:AD:DP:GQ:PL    0/1:8,4:13:99:131,0,210
2    9650350    rs35431407    C    CATAA    516.03    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=69.7552;IndelType=I;MQ=56.04;MQ0=0;MQRankSum=-2.626;QD=28.67;ReadPosRankSum=1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310823    GT:AD:DP:GQ:PL    0/1:11,7:18:99:555,0,614
2    9657947    rs2298763    A    T    34.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=3.47;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497134    GT:AD:DP:GQ:PL    0/1:6,4:10:64.69:65,0,200
2    9661184    rs4328603    T    C    88.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497134    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    9661589    rs4278906    C    T    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497134    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    9983716    rs385513    A    C    53.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
2    9989762    rs287989    T    C    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416181    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
2    9991556    rs287991    G    A    494.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416181    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:528,42,0
2    9991867    rs287992    G    A    97.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.466;QD=8.9;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416181    GT:AD:DP:GQ:PL    0/1:6,5:11:99:128,0,220
2    10023016    rs447465    T    C    185.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=20.57;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:3,6:9:99:215,0,101
2    10044875    rs565683    A    G    157.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=15.71;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:4,6:10:99:187,0,134
2    10044941    rs450192    G    T    550.94    SnpCluster    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=34;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.035;QD=16.2;ReadPosRankSum=-0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:13,21:34:99:581,0,354
2    10044946    rs450194    G    T    563.28    SnpCluster    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.257;DB;DP=36;Dels=0.0;FS=1.715;HRun=4;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.738;QD=15.65;ReadPosRankSum=0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:15,21:36:99:593,0,435
2    10044951    rs2052948    A    G    366.71    SnpCluster    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.611;DB;DP=38;Dels=0.0;FS=1.495;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.088;QD=9.65;ReadPosRankSum=-1.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:21,17:38:99:397,0,722
2    10045014    rs400917    C    T    1975.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.27;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=Y23;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10044988_10045135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396242    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2009,147,0
2    10045024    rs396190    G    A    2058.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=V27I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10044988_10045135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396242    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2091,153,0
2    10045147    rs448327    A    G    1854.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1888,135,0
2    10050947    rs1054561    T    C    571.50    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.951;DB;DP=36;Dels=0.0;FS=10.352;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.665;QD=15.87;ReadPosRankSum=-0.095;SNPEFF_AMINO_ACID_CHANGE=A346;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10050865_10051042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:19,17:36:99:601,0,575
2    10050960    rs1054565    A    G    491.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.595;DB;DP=38;Dels=0.0;FS=12.604;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=12.94;ReadPosRankSum=-0.137;SNPEFF_AMINO_ACID_CHANGE=T351A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10050865_10051042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:19,19:38:99:522,0,577
2    10051053    rs10495576    G    C    149.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=24;Dels=0.0;FS=4.416;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.317;QD=6.25;ReadPosRankSum=-1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:16,8:24:99:180,0,543
2    10053412    rs12467598    C    T    539.47    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=1.955;DB;DP=59;Dels=0.0;FS=2.977;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.195;QD=9.14;ReadPosRankSum=-1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:38,21:59:99:569,0,1217
2    10059097    rs2303921    A    C    399.96    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.301;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.027;QD=16.0;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:11,14:25:99:430,0,383
2    10059620    rs1820966    G    C    110.63    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=12.29;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263663    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,114
2    10059770    rs1820965    G    T    1151.53    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.079;QD=15.99;ReadPosRankSum=0.983;SNPEFF_AMINO_ACID_CHANGE=E207D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10059727_10059949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396242    GT:AD:DP:GQ:PL    0/1:33,39:72:99:1182,0,1018
2    10094992    rs2303918    A    G    2283.59    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=3.095;DB;DP=159;Dels=0.0;FS=3.122;HRun=0;HaplotypeScore=3.4527;MQ=59.06;MQ0=0;MQRankSum=0.043;QD=14.36;ReadPosRankSum=0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324883    GT:AD:DP:GQ:PL    0/1:76,79:159:99:2314,0,2069
2    10137119    rs2357394    A    G    655.78    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.703;DB;DP=56;Dels=0.0;FS=1.034;HRun=0;HaplotypeScore=1.6281;MQ=59.17;MQ0=0;MQRankSum=-0.189;QD=11.71;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324883    GT:AD:DP:GQ:PL    0/1:30,26:56:99:686,0,955
2    10206266    .    G    A    70.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.66;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381813    GT:AD:DP:GQ:PL    0/1:1,3:4:10.66:100,0,11
2    10225241    rs6432058    C    T    322.64    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.366;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.561;QD=11.52;ReadPosRankSum=0.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381813    GT:AD:DP:GQ:PL    0/1:15,13:28:99:353,0,488
2    10226306    rs34098251    G    GC    371.96    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=24;FS=0.0;HRun=1;HaplotypeScore=59.6854;IndelType=I;MQ=58.52;MQ0=0;MQRankSum=-0.174;QD=15.5;ReadPosRankSum=0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORA26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391256    GT:AD:DP:GQ:PL    0/1:13,11:24:99:411,0,427
2    10262920    rs1130609    T    G    79.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.79;SNPEFF_AMINO_ACID_CHANGE=S59A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10262455_10263024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360566    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:111,9,0
2    10264057    rs6432065    T    C    801.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=26.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461327    GT:AD:DP:GQ:PL    1/1:1,29:30:72.18:835,72,0
2    10264709    rs6741290    T    C    408.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459969    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:442,33,0
2    10282679    rs78304312    G    GC    127.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=23.4186;IndelType=I;MQ=57.52;MQ0=0;QD=25.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381786    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:169,12,0
2    10563236    rs55737425    G    A    449.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.327;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.123;QD=26.46;ReadPosRankSum=0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423674    GT:AD:DP:GQ:PL    1/1:1,16:17:1.49:479,1,0
2    10566792    rs2270306    C    G    2738.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7273;MQ=59.23;MQ0=0;MQRankSum=-1.231;QD=32.6;ReadPosRankSum=-0.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307845    GT:AD:DP:GQ:PL    1/1:1,83:84:99:2772,211,0
2    10566804    rs2270307    A    G    3053.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=59.34;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307845    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3086,244,0
2    10567082    rs1042953    A    G    113.86    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.77;ReadPosRankSum=0.731;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307845    GT:AD:DP:GQ:PL    0/1:1,4:5:23.53:144,0,24
2    10583160    rs1405948    G    A    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.72;QD=5.64;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443218    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,145
2    10595578    rs6432097    T    C    210.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.209;QD=13.13;ReadPosRankSum=-1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-320M2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547349    GT:AD:DP:GQ:PL    0/1:8,8:16:99:240,0,252
2    10711941    rs10172924    C    A    42.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=33.24;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538384    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
2    10717714    rs12473957    G    C    1851.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.924;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.097;QD=30.85;ReadPosRankSum=1.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1884,110,0
2    10718007    rs7570118    G    T    479.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:513,39,0
2    10729032    rs6714787    C    T    1195.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5949;MQ=59.39;MQ0=0;QD=31.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1228,93,0
2    10729554    rs759402    A    T    695.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,22:22:60.16:728,60,0
2    10729897    rs759403    C    T    1535.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5981;MQ=59.46;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1569,117,0
2    10741141    rs10181806    A    G    478.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:512,39,0
2    10743153    rs2287061    C    T    1154.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,32:32:93.21:1187,93,0
2    10743191    rs2287062    G    A    1947.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1981,144,0
2    10743546    rs1309    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    10747207    rs6759714    A    G    206.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
2    10747246    rs6744854    C    G    511.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:545,42,0
2    10747271    rs6759740    A    G    691.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.22;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:724,57,0
2    10762302    rs76702332    TA    T    1081.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=2;HaplotypeScore=83.0981;IndelType=D;MQ=61.04;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:1,30:31:87.28:1124,87,0
2    10808776    rs55925118    C    CAA    1031.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=4;HaplotypeScore=42.0801;IndelType=I;MQ=60.53;MQ0=0;QD=57.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473087    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:1074,54,0
2    10811607    .    G    A    700.39    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.091;DP=49;Dels=0.0;FS=1.821;HRun=0;HaplotypeScore=0.5784;MQ=58.58;MQ0=0;MQRankSum=0.963;QD=14.29;ReadPosRankSum=0.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473087    GT:AD:DP:GQ:PL    0/1:24,25:49:99:730,0,693
2    10813782    rs6748766    T    C    613.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:646,48,0
2    10815833    rs9287721    A    G    471.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345985    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:505,39,0
2    10908893    rs1198849    A    G    729.49    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.989;QD=11.05;ReadPosRankSum=-0.408;SNPEFF_AMINO_ACID_CHANGE=N143D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10908845_10908936;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    0/1:39,27:66:99:759,0,1191
2    10911891    rs1198850    T    C    1562.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=39.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1595,117,0
2    10912153    rs2171773    T    G    244.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-2.678;QD=15.3;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    0/1:8,8:16:99:275,0,224
2    10912719    rs72777388    G    A    2593.13    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.342;DB;DP=206;DS;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=4.7323;MQ=59.44;MQ0=0;MQRankSum=0.484;QD=12.59;ReadPosRankSum=-0.287;SNPEFF_AMINO_ACID_CHANGE=V207;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10912668_10912736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    0/1:113,93:206:99:2623,0,3404
2    10914867    rs56195743    A    T    1353.91    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.511;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.556;QD=15.74;ReadPosRankSum=0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    0/1:40,45:86:99:1384,0,1227
2    10915020    rs2969881    A    G    1359.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.912;DB;DP=77;Dels=0.0;FS=1.056;HRun=2;HaplotypeScore=2.6744;MQ=59.7;MQ0=0;MQRankSum=0.23;QD=17.66;ReadPosRankSum=1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    0/1:33,44:77:99:1390,0,1069
2    10917555    rs72777393    C    T    53.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=10.72;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    0/1:2,3:5:68.84:84,0,69
2    10922516    rs1686482    A    C    759.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:793,63,0
2    10924524    rs1198873    T    C    223.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:256,24,0
2    10927345    rs1686510    T    C    531.17    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=58.92;MQ0=0;MQRankSum=-0.102;QD=13.62;ReadPosRankSum=-2.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272238    GT:AD:DP:GQ:PL    0/1:18,20:39:99:561,0,644
2    10928610    rs1734434    T    C    278.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:311,24,0
2    10928694    rs11409434    G    GA    406.67    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=1.649;DB;DP=42;FS=0.0;HRun=14;HaplotypeScore=493.6967;IndelType=I;MQ=50.72;MQ0=0;MQRankSum=-0.791;QD=9.68;ReadPosRankSum=-1.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    0/1:16,16:42:6.13:445,0,6
2    10928710    rs1734433    A    C    456.48    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.75;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.5032;MQ=53.1;MQ0=0;MQRankSum=-0.592;QD=8.01;ReadPosRankSum=0.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    0/1:31,25:57:99:486,0,566
2    10928777    rs2952626    A    C    5410.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.159;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=58.62;MQ0=0;MQRankSum=0.333;QD=33.4;ReadPosRankSum=0.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    1/1:2,160:162:99:5411,372,0
2    10928906    rs1734432    T    C    5447.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.296;DB;DP=152;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9981;MQ=58.93;MQ0=0;MQRankSum=-0.562;QD=35.84;ReadPosRankSum=1.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    1/1:1,151:152:99:5447,363,0
2    10928962    rs1734431    A    G    3324.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=33.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3324,268,0
2    10929133    rs1734430    A    G    1664.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1697,126,0
2    10929867    rs11904084    T    C    1831.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=59.16;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1865,141,0
2    10930050    rs1686514    A    T    1136.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.93;MQ0=0;QD=33.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    1/1:0,34:34:93.26:1170,93,0
2    10930106    rs3841902    ATTT    A    107.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=18;HaplotypeScore=80.8606;IndelType=D;MQ=47.12;MQ0=0;QD=10.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381661    GT:AD:DP:GQ:PL    1/1:4,5:10:17.60:149,18,0
2    10930903    rs4807    T    C    1617.38    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.122;DB;DP=127;Dels=0.0;FS=0.77;HRun=0;HaplotypeScore=0.734;MQ=59.64;MQ0=0;MQRankSum=1.249;QD=12.74;ReadPosRankSum=-0.362;SNPEFF_AMINO_ACID_CHANGE=K211R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10930845_10930959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540494    GT:AD:DP:GQ:PL    0/1:61,66:127:99:1647,0,1824
2    10931001    rs1614107    A    G    755.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,26:26:60.17:788,60,0
2    10931046    rs1734419    G    A    330.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:363,30,0
2    10931063    rs1734420    T    C    310.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:344,27,0
2    10932082    rs1734421    T    C    946.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:979,72,0
2    10932207    rs1734422    C    A    253.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:287,24,0
2    10933249    rs4799    C    T    922.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=R139;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10933222_10933328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540494    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:956,72,0
2    10933346    rs75715279    T    TAGGC    731.95    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.191;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=75.8172;IndelType=I;MQ=58.3;MQ0=0;MQRankSum=0.076;QD=34.85;ReadPosRankSum=0.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489662    GT:AD:DP:GQ:PL    0/1:11,10:21:99:771,0,444
2    10933421    rs1686517    G    A    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489662    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    10937037    rs1734343    T    G    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489662    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    10937065    rs1734344    T    C    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489662    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,100
2    10937095    rs56147885    T    A    49.14    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=13;Dels=0.0;FS=5.119;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=3.78;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489662    GT:AD:DP:GQ:PL    0/1:9,4:13:79.13:79,0,331
2    10937409    rs1686444    C    T    617.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.073;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=29.4;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:1,20:21:15.60:650,16,0
2    10937687    rs1734346    G    A    418.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:452,33,0
2    10938043    rs56346617    T    G    272.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:306,24,0
2    10942333    rs1734359    T    C    68.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
2    10942354    rs1686435    G    A    76.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=25.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
2    10942392    rs1734360    A    G    111.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
2    10942411    rs1734361    G    T    114.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
2    10942520    rs2306922    C    T    321.30    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.71;MQ0=0;MQRankSum=-1.569;QD=11.9;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    0/1:15,12:27:99:351,0,493
2    10942567    rs1686434    G    A    1551.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.027;DB;DP=46;Dels=0.0;FS=6.825;HRun=0;HaplotypeScore=0.5784;MQ=55.86;MQ0=0;MQRankSum=-0.081;QD=33.74;ReadPosRankSum=1.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:2,44:46:81.61:1585,82,0
2    10942644    .    C    A    127.11    FSFilter60;QDFilter2    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.728;DP=71;Dels=0.0;FS=92.642;HRun=2;HaplotypeScore=5.0403;MQ=56.05;MQ0=0;MQRankSum=-0.132;QD=1.79;ReadPosRankSum=1.307;SNPEFF_AMINO_ACID_CHANGE=V100L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10942625_10942766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404371    GT:AD:DP:GQ:PL    0/1:41,30:71:99:157,0,1294
2    10942687    rs4758    C    T    1836.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.03;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=S30;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10942625_10942766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540494    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1870,138,0
2    10952790    rs6726687    T    C    83.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    10959292    rs56321198    C    A    107.09    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.231;QD=5.64;ReadPosRankSum=0.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458536    GT:AD:DP:GQ:PL    0/1:14,5:19:99:137,0,516
2    10959384    rs55770944    A    G    763.17    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.878;DB;DP=75;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9243;MQ=59.69;MQ0=0;MQRankSum=0.151;QD=10.18;ReadPosRankSum=1.553;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458536    GT:AD:DP:GQ:PL    0/1:44,30:75:99:793,0,1361
2    10959407    rs72779451    A    C    1182.70    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.744;DB;DP=93;Dels=0.0;FS=5.687;HRun=1;HaplotypeScore=0.9997;MQ=59.75;MQ0=0;MQRankSum=-0.043;QD=12.72;ReadPosRankSum=-0.61;SNPEFF_AMINO_ACID_CHANGE=N52K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10959400_10959480;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404824    GT:AD:DP:GQ:PL    0/1:52,41:93:99:1213,0,1630
2    10959461    rs72779452    G    T    1055.50    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.496;DB;DP=90;Dels=0.0;FS=0.797;HRun=0;HaplotypeScore=1.7128;MQ=59.28;MQ0=0;MQRankSum=0.227;QD=11.73;ReadPosRankSum=-0.134;SNPEFF_AMINO_ACID_CHANGE=A34;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10959400_10959480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404824    GT:AD:DP:GQ:PL    0/1:50,39:90:99:1085,0,1344
2    10959475    rs72779453    G    C    1052.14    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.654;DB;DP=85;Dels=0.0;FS=0.856;HRun=0;HaplotypeScore=0.9789;MQ=59.51;MQ0=0;MQRankSum=-0.719;QD=12.38;ReadPosRankSum=0.005;SNPEFF_AMINO_ACID_CHANGE=P30A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10959400_10959480;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404824    GT:AD:DP:GQ:PL    0/1:43,42:85:99:1082,0,1298
2    10960952    rs56025654    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_AMINO_ACID_CHANGE=C13;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_10960897_10961044;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404371    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    10987581    rs73174567    T    A    42.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=3.52;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,6:12:72.26:72,0,198
2    10987911    rs72781405    G    A    68.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=9.76;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092687.4;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,3:7:94.37:98,0,94
2    10994418    rs1198852    T    C    337.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092687.4;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:30.05:370,30,0
2    10994937    rs1198851    C    T    258.98    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=10.79;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092687.4;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,11:24:99:289,0,421
2    11053020    rs3732104    A    G    773.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_AMINO_ACID_CHANGE=A156;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_11052063_11054350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295082    GT:AD:DP:GQ:PL    1/1:0,28:28:66.18:807,66,0
2    11264830    rs7560331    G    A    773.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC062028.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396164    GT:AD:DP:GQ:PL    1/1:0,26:26:60.20:806,60,0
2    11273813    rs6751137    T    C    298.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.91;MQ0=0;QD=27.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381585    GT:AD:DP:GQ:PL    1/1:0,11:11:30.04:331,30,0
2    11300869    rs6432182    T    C    602.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.06;MQ0=0;QD=26.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295083    GT:AD:DP:GQ:PL    1/1:1,21:23:54.13:636,54,0
2    11312224    rs3732103    C    T    477.69    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=3.907;DB;DP=41;Dels=0.0;FS=2.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.152;QD=11.65;ReadPosRankSum=1.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445402    GT:AD:DP:GQ:PL    0/1:25,16:41:99:508,0,681
2    11333994    rs2271621    T    G    271.65    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.646;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.99;MQ0=0;MQRankSum=1.077;QD=11.81;ReadPosRankSum=1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460262    GT:AD:DP:GQ:PL    0/1:12,11:23:99:302,0,368
2    11359031    rs9808228    G    T    879.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431087    GT:AD:DP:GQ:PL    1/1:0,27:27:75.19:912,75,0
2    11362351    rs2122385    G    A    414.17    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.738;DB;DP=40;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.056;QD=10.35;ReadPosRankSum=-1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315872    GT:AD:DP:GQ:PL    0/1:25,15:40:99:444,0,865
2    11682754    rs112143277    C    CG    775.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=6;HaplotypeScore=112.5282;IndelType=I;MQ=62.41;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263834    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:818,66,0
2    11682796    rs12620490    A    T    2006.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9385;MQ=60.54;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263834    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2040,156,0
2    11683074    rs10929754    T    G    134.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263834    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
2    11702661    rs10929757    A    C    2219.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=28.82;SNPEFF_AMINO_ACID_CHANGE=N77T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_11702589_11702708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2252,187,0
2    11718591    rs1529868    C    T    176.47    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.585;DB;DP=20;Dels=0.0;FS=4.506;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=8.82;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    0/1:13,7:20:99:206,0,455
2    11720986    rs13004648    G    A    119.71    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=7.48;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=G200E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_11720830_11721391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389825    GT:AD:DP:GQ:PL    0/1:11,5:16:99:150,0,394
2    11725947    rs35188552    T    C    1087.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=F359L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_11725888_11726031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1121,90,0
2    11726061    rs113066358    G    GA    1661.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=1;HaplotypeScore=80.6031;IndelType=I;MQ=61.41;MQ0=0;QD=43.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389825    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1703,114,0
2    11727393    rs70955805    TG    T    1961.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DB;DP=52;FS=4.184;HRun=1;HaplotypeScore=136.7473;IndelType=D;MQ=59.32;MQ0=0;MQRankSum=-0.928;QD=37.72;ReadPosRankSum=-1.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:2,50:52:60.51:2003,61,0
2    11727507    rs13394619    G    A    1819.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=35.67;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000263834    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1852,135,0
2    11729096    rs35587928    G    A    1056.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263834    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1090,81,0
2    11736305    rs36030386    G    A    1129.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.444;QD=31.37;ReadPosRankSum=-0.481;SNPEFF_AMINO_ACID_CHANGE=A266T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_11736237_11736365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432985    GT:AD:DP:GQ:PL    1/1:1,35:36:59.87:1162,60,0
2    11738091    rs1435547    T    C    5437.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=174;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3985;MQ=59.74;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=H347;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_11737907_11738104;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432985    GT:AD:DP:GQ:PL    1/1:0,174:174:99:5437,445,0
2    11738765    rs1865575    C    T    1706.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1739,135,0
2    11741157    rs16857679    A    G    200.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.347;QD=9.56;ReadPosRankSum=1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    0/1:12,9:21:99:231,0,397
2    11741193    rs11681838    C    A    328.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:1,10:11:27.09:362,27,0
2    11752635    rs2304399    T    C    1584.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.71;SNPEFF_AMINO_ACID_CHANGE=I1007;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_11752621_11752736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1618,126,0
2    11752919    rs3816096    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432985    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    11755443    rs2252958    T    G    111.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=12.43;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432985    GT:AD:DP:GQ:PL    0/1:4,5:9:99:142,0,145
2    11757009    rs6735957    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    11757023    rs892868    C    T    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    11757076    rs3792038    G    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    11757086    rs3792037    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    11758261    rs7421823    C    T    43.69    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.83;MQ0=0;MQRankSum=-0.731;QD=8.74;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    0/1:1,4:5:28.64:74,0,29
2    11758262    rs114657975    C    G    40.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.36;MQ0=0;MQRankSum=-0.922;QD=5.81;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    0/1:2,5:7:65.01:71,0,65
2    11761309    rs2304401    T    C    76.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472040    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
2    11766895    .    A    G    34.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:65,0,31
2    11774324    rs2304402    G    A    829.83    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.236;DB;DP=52;Dels=0.0;FS=1.088;HRun=1;HaplotypeScore=1.8773;MQ=60.0;MQ0=0;MQRankSum=0.085;QD=15.96;ReadPosRankSum=0.745;SNPEFF_AMINO_ACID_CHANGE=D1687N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_11774257_11774475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234142    GT:AD:DP:GQ:PL    0/1:24,28:52:99:860,0,626
2    11905636    rs5829328    GT    G    447.24    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=3.349;DB;DP=32;FS=0.0;HRun=9;HaplotypeScore=79.7788;IndelType=D;MQ=58.88;MQ0=0;MQRankSum=-0.407;QD=13.98;ReadPosRankSum=-0.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256720    GT:AD:DP:GQ:PL    0/1:11,21:32:99:486,0,222
2    11905876    rs10209969    C    T    337.96    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.809;DB;DP=30;Dels=0.0;FS=2.418;HRun=0;HaplotypeScore=2.7337;MQ=60.0;MQ0=0;MQRankSum=0.921;QD=11.27;ReadPosRankSum=-0.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423495    GT:AD:DP:GQ:PL    0/1:17,13:30:99:368,0,486
2    11919498    rs2289193    G    A    98.11    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.92;ReadPosRankSum=2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256720    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,206
2    11922855    rs7587836    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256720    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    11924293    rs3762583    G    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396098    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
2    11924950    rs3795974    T    C    385.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=35;Dels=0.0;FS=1.565;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.283;QD=11.01;ReadPosRankSum=0.917;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396098    GT:AD:DP:GQ:PL    0/1:20,15:35:99:415,0,556
2    11931931    rs78343196    A    AT    670.24    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.116;DB;DP=65;FS=0.0;HRun=9;HaplotypeScore=168.0478;IndelType=I;MQ=59.81;MQ0=0;MQRankSum=0.426;QD=10.31;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256720    GT:AD:DP:GQ:PL    0/1:38,26:65:99:709,0,587
2    11932173    rs7561070    G    T    187.43    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.66;QD=14.42;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256720    GT:AD:DP:GQ:PL    0/1:6,7:13:99:217,0,214
2    11936798    rs2577264    A    G    64.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.15;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464953    GT:AD:DP:GQ:PL    0/1:6,3:9:94.37:94,0,174
2    12163800    rs4669796    C    G    565.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.405;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.593;QD=12.03;ReadPosRankSum=0.505;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC096559.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412294    GT:AD:DP:GQ:PL    0/1:23,23:46:99:596,0,713
2    12164189    rs4668745    C    T    1915.16    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.849;DB;DP=148;Dels=0.0;FS=1.348;HRun=0;HaplotypeScore=4.2186;MQ=54.22;MQ0=2;MQRankSum=-0.645;QD=12.94;ReadPosRankSum=-0.102;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC096559.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412294    GT:AD:DP:GQ:PL    0/1:76,70:148:99:1945,0,2157
2    12164246    rs4669797    C    T    2245.48    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=166;Dels=0.0;FS=2.782;HRun=0;HaplotypeScore=0.9332;MQ=57.38;MQ0=1;MQRankSum=-1.122;QD=13.53;ReadPosRankSum=-0.888;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC096559.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412294    GT:AD:DP:GQ:PL    0/1:84,82:166:99:2275,0,2413
2    12164456    rs13002221    C    T    600.19    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=36;Dels=0.0;FS=1.297;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.6;QD=16.67;ReadPosRankSum=0.341;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC096559.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412294    GT:AD:DP:GQ:PL    0/1:14,22:36:99:630,0,427
2    12164535    rs62113770    G    A    628.58    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=39;Dels=0.0;FS=1.257;HRun=0;HaplotypeScore=0.0;MQ=56.56;MQ0=0;MQRankSum=-0.297;QD=16.12;ReadPosRankSum=-0.977;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC096559.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412294    GT:AD:DP:GQ:PL    0/1:17,22:39:99:659,0,519
2    12164627    rs3890478    A    G    570.64    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=45;Dels=0.0;FS=1.378;HRun=0;HaplotypeScore=0.5784;MQ=44.87;MQ0=4;MQRankSum=-4.554;QD=12.68;ReadPosRankSum=-0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC096559.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412294    GT:AD:DP:GQ:PL    0/1:16,29:45:99:601,0,471
2    12164827    rs12471113    T    C    510.98    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.434;DB;DP=37;Dels=0.0;FS=4.167;HRun=0;HaplotypeScore=0.9933;MQ=56.29;MQ0=0;MQRankSum=-0.442;QD=13.81;ReadPosRankSum=-0.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC096559.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412294    GT:AD:DP:GQ:PL    0/1:17,20:37:99:541,0,497
2    12864613    rs6432324    T    A    418.88    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.698;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=18.21;ReadPosRankSum=1.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155926    GT:AD:DP:GQ:PL    0/1:10,13:23:99:449,0,341
2    15319070    rs10708316    TA    T    431.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.867;DB;DP=27;FS=0.0;HRun=13;HaplotypeScore=80.6692;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=1.445;QD=15.99;ReadPosRankSum=0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:3,24:27:42.39:474,42,0
2    15330211    rs2302941    G    A    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
2    15372731    rs10929352    T    G    297.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:330,27,0
2    15378822    rs146265178    G    GAATT    2348.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=102.8171;IndelType=I;MQ=53.81;MQ0=0;QD=73.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:3,29:32:93.32:2391,93,0
2    15415525    rs3755127    C    T    338.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:371,27,0
2    15417280    rs67721964    ATT    A    188.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=10;HaplotypeScore=63.8354;IndelType=D;MQ=54.65;MQ0=0;QD=20.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:2,7:9:20.65:230,21,0
2    15427173    rs4668892    C    T    1267.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:0,39:39:93.31:1301,93,0
2    15448311    rs1318102    A    T    1642.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.62;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1675,126,0
2    15468025    rs2042145    T    C    772.93    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=54;Dels=0.0;FS=9.759;HRun=0;HaplotypeScore=0.8321;MQ=59.19;MQ0=0;MQRankSum=0.424;QD=14.31;ReadPosRankSum=0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:26,28:54:99:803,0,832
2    15471002    rs6759219    C    A    74.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,103
2    15493881    rs2277915    A    G    948.11    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.917;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.786;MQ=60.0;MQ0=0;MQRankSum=-0.417;QD=12.81;ReadPosRankSum=-1.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:41,33:74:99:978,0,1438
2    15514982    rs2049720    T    C    318.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:352,27,0
2    15515058    rs2049719    A    G    68.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:101,9,0
2    15519992    rs2058866    G    T    401.23    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=20.06;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:7,13:20:99:431,0,234
2    15523266    rs6756934    A    T    922.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:956,72,0
2    15523307    rs11294341    TA    T    426.94    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.605;DB;DP=48;FS=1.44;HRun=9;HaplotypeScore=201.5909;IndelType=D;MQ=59.26;MQ0=0;MQRankSum=1.484;QD=8.89;ReadPosRankSum=-0.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:26,22:48:99:466,0,692
2    15523549    rs3755129    T    C    69.04    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=1.836;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.045;QD=3.29;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:17,4:21:99:99,0,568
2    15534642    rs3792578    G    A    108.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.07;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:2,4:6:65.82:138,0,66
2    15542159    rs6733647    A    G    229.46    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=20.86;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:3,8:11:91.78:259,0,92
2    15564718    rs10929367    T    C    253.95    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8914;MQ=58.2;MQ0=0;MQRankSum=0.289;QD=19.53;ReadPosRankSum=-1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:4,9:13:99:284,0,124
2    15564799    rs6748427    T    C    81.02    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=11.57;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:2,5:7:66.83:111,0,67
2    15601287    rs11411624    A    AT    399.78    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.424;DB;DP=36;FS=2.006;HRun=1;HaplotypeScore=93.5227;IndelType=I;MQ=60.3;MQ0=0;MQRankSum=1.029;QD=11.1;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:24,12:36:99:439,0,777
2    15601441    rs7590340    C    T    993.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.64;MQ0=0;MQRankSum=-1.564;QD=15.53;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=L741;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_15601325_15601461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:32,32:64:99:1024,0,1018
2    15601574    rs7590458    C    T    118.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.951;QD=11.87;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:5,5:10:99:149,0,166
2    15607842    rs4668909    T    C    267.84    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.018;DB;DP=38;Dels=0.0;FS=13.359;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.078;QD=7.05;ReadPosRankSum=0.517;SNPEFF_AMINO_ACID_CHANGE=K655R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_15607788_15607928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:23,15:38:99:298,0,774
2    15608013    rs4668910    C    A    69.92    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.74;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,188
2    15614404    rs13014906    T    C    679.99    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=54;Dels=0.0;FS=2.772;HRun=1;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=-1.645;QD=12.59;ReadPosRankSum=-1.367;SNPEFF_AMINO_ACID_CHANGE=R462;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_15614191_15614448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:30,24:54:99:710,0,986
2    15615910    rs1990754    A    G    717.81    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.557;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.51;MQ0=0;MQRankSum=1.45;QD=15.27;ReadPosRankSum=-1.14;SNPEFF_AMINO_ACID_CHANGE=S414;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_15615811_15616004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:17,30:47:99:748,0,578
2    15616013    rs1990755    C    G    329.89    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=3.552;DB;DP=34;Dels=0.0;FS=5.403;HRun=1;HaplotypeScore=1.4105;MQ=58.63;MQ0=0;MQRankSum=0.856;QD=9.7;ReadPosRankSum=0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:19,15:34:99:360,0,529
2    15616030    rs1990756    C    T    316.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=30;Dels=0.0;FS=6.495;HRun=0;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;MQRankSum=-2.029;QD=10.56;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:15,15:30:99:347,0,492
2    15618339    rs1125534    G    A    659.13    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=3.874;DB;DP=34;Dels=0.0;FS=1.63;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-2.757;QD=19.39;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:12,22:34:99:689,0,329
2    15644401    rs2287265    C    T    190.85    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.023;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.858;QD=10.04;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:11,8:19:99:221,0,392
2    15674686    rs13029846    T    C    1335.78    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=3.561;DB;DP=101;Dels=0.0;FS=1.609;HRun=0;HaplotypeScore=1.748;MQ=59.77;MQ0=0;MQRankSum=-0.114;QD=13.23;ReadPosRankSum=-1.437;SNPEFF_AMINO_ACID_CHANGE=I243V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_15674667_15674765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:50,51:101:99:1366,0,1457
2    15676686    rs10208972    G    A    1088.19    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=1.358;DB;DP=112;Dels=0.0;FS=1.798;HRun=1;HaplotypeScore=9.8792;MQ=57.48;MQ0=0;MQRankSum=0.014;QD=9.72;ReadPosRankSum=-0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:66,46:112:99:1118,0,1772
2    15676884    rs10929374    T    A    75.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=10.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,143
2    15678368    rs7595512    C    T    218.01    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=24.22;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:2,7:9:57.39:248,0,57
2    15678482    rs2380657    T    C    290.65    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=16;Dels=0.0;FS=2.171;HRun=0;HaplotypeScore=0.0;MQ=60.67;MQ0=0;MQRankSum=0.705;QD=18.17;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:6,10:16:99:321,0,208
2    15678501    rs66736557    GA    G    119.65    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;FS=2.398;HRun=9;HaplotypeScore=53.3601;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=-0.278;QD=10.88;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:4,7:11:99:159,0,105
2    15679609    rs2058868    A    T    172.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.259;QD=14.35;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:6,6:12:99:202,0,208
2    15694164    rs34789730    T    TA    527.90    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=19;FS=1.808;HRun=1;HaplotypeScore=38.9657;IndelType=I;MQ=58.78;MQ0=0;MQRankSum=-0.219;QD=27.78;ReadPosRankSum=0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281513    GT:AD:DP:GQ:PL    0/1:6,13:19:99:567,0,191
2    15735419    rs2302928    G    A    184.21    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.036;QD=18.42;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434671    GT:AD:DP:GQ:PL    0/1:4,6:10:99:214,0,129
2    15735520    rs140126421    G    A    178.80    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=22.35;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434671    GT:AD:DP:GQ:PL    0/1:2,6:8:32.18:209,0,32
2    15737265    rs3815688    A    G    31.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434671    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:63,6,0
2    15737698    rs2302932    G    A    188.23    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.74;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=8.56;ReadPosRankSum=0.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434671    GT:AD:DP:GQ:PL    0/1:14,8:22:99:218,0,517
2    15744484    rs68057370    CT    C    270.77    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=3.34;DB;DP=29;FS=0.0;HRun=4;HaplotypeScore=74.7485;IndelType=D;MQ=59.78;MQ0=0;MQRankSum=-0.941;QD=9.34;ReadPosRankSum=0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233084    GT:AD:DP:GQ:PL    0/1:18,11:29:99:310,0,612
2    15745839    rs7575749    A    G    37.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233084    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:67,0,31
2    15746596    rs35352575    G    T    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233084    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    15747393    rs10929378    C    T    625.08    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=60;Dels=0.0;FS=4.136;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.741;QD=10.42;ReadPosRankSum=-0.882;SNPEFF_AMINO_ACID_CHANGE=N288;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_15747299_15747437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543614    GT:AD:DP:GQ:PL    0/1:34,25:60:99:655,0,1150
2    15768876    rs11900266    G    A    383.52    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.866;DB;DP=33;Dels=0.0;FS=5.793;HRun=0;HaplotypeScore=0.9332;MQ=59.3;MQ0=0;MQRankSum=-1.05;QD=11.62;ReadPosRankSum=1.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470674    GT:AD:DP:GQ:PL    0/1:20,13:33:99:414,0,622
2    15768981    rs62122280    C    G    706.37    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.345;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-1.402;QD=18.11;ReadPosRankSum=1.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470674    GT:AD:DP:GQ:PL    0/1:17,22:39:99:736,0,522
2    16734284    rs12997119    T    C    672.19    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=44;Dels=0.0;FS=9.84;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.161;QD=15.28;ReadPosRankSum=0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM49A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355549    GT:AD:DP:GQ:PL    0/1:19,25:44:99:702,0,585
2    16743453    rs6751062    A    C    85.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.983;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=5.35;ReadPosRankSum=-1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM49A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445605    GT:AD:DP:GQ:PL    0/1:10,6:16:99:116,0,344
2    16746897    rs62122698    C    G    578.26    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=3.844;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.82;MQ0=0;MQRankSum=-1.106;QD=9.8;ReadPosRankSum=-0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM49A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355549    GT:AD:DP:GQ:PL    0/1:37,22:59:99:608,0,1029
2    17023338    rs57513170    GCACA    G    702.78    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.086;DB;DP=70;FS=3.01;HRun=0;HaplotypeScore=438.6488;IndelType=D;MQ=58.61;MQ0=0;MQRankSum=1.091;QD=10.04;ReadPosRankSum=-1.316;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC008069.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401374    GT:AD:DP:GQ:PL    0/1:36,19:70:99:742,0,129
2    17696573    rs834514    C    T    773.34    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.15;DB;DP=73;Dels=0.0;FS=0.966;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.657;QD=10.59;ReadPosRankSum=-1.617;SNPEFF_AMINO_ACID_CHANGE=G1037D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17696436_17699706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD51AP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399080    GT:AD:DP:GQ:PL    0/1:44,28:73:99:803,0,1475
2    17698678    rs665312    A    G    1142.56    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=3.715;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.73;MQ0=0;MQRankSum=-0.402;QD=16.32;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=S335;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17696436_17699706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD51AP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399080    GT:AD:DP:GQ:PL    0/1:34,35:70:99:1173,0,1030
2    17773524    rs2680827    G    A    665.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.345;DB;DP=48;Dels=0.0;FS=15.349;HRun=0;HaplotypeScore=1.3123;MQ=59.03;MQ0=0;MQRankSum=0.491;QD=13.87;ReadPosRankSum=-0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295156    GT:AD:DP:GQ:PL    0/1:28,20:48:99:696,0,747
2    17846592    rs2710674    A    T    630.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381272    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:664,48,0
2    17864680    rs2433295    A    G    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.42;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351948    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
2    17884495    rs1065381    C    T    530.99    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.195;DB;DP=47;Dels=0.0;FS=1.296;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.28;QD=11.3;ReadPosRankSum=0.247;SNPEFF_AMINO_ACID_CHANGE=A691T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17884424_17884559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351948    GT:AD:DP:GQ:PL    0/1:27,20:47:99:561,0,877
2    17888457    rs6734462    G    A    679.68    PASS    AB=0.233;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=22.66;ReadPosRankSum=1.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430591    GT:AD:DP:GQ:PL    0/1:7,23:30:99:710,0,208
2    17889705    rs9306855    A    G    70.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351948    GT:AD:DP:GQ:PL    0/1:2,3:5:61.07:101,0,61
2    17897488    rs35195207    T    C    1090.18    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=72;Dels=0.0;FS=2.238;HRun=2;HaplotypeScore=3.4518;MQ=59.03;MQ0=0;MQRankSum=-0.127;QD=15.14;ReadPosRankSum=-0.549;SNPEFF_AMINO_ACID_CHANGE=R464G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17897353_17897531;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351948    GT:AD:DP:GQ:PL    0/1:32,39:72:99:1120,0,962
2    17898326    rs12469221    C    T    350.98    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.427;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.705;QD=9.49;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351948    GT:AD:DP:GQ:PL    0/1:23,14:37:99:381,0,804
2    17899584    rs9679094    T    G    103.31    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=14.76;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351948    GT:AD:DP:GQ:PL    0/1:3,4:7:99:133,0,105
2    17913266    rs2052746    A    C    93.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351948    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
2    17941423    rs2555072    T    G    340.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.198;DB;DP=22;Dels=0.0;FS=10.16;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.275;QD=15.47;ReadPosRankSum=1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317402    GT:AD:DP:GQ:PL    0/1:10,12:22:99:370,0,340
2    17942775    rs1812152    T    A    375.19    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=10.72;ReadPosRankSum=-1.28;SNPEFF_AMINO_ACID_CHANGE=S92T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17942663_17942849;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317402    GT:AD:DP:GQ:PL    0/1:22,13:35:99:405,0,735
2    17943015    rs2615047    T    C    37.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532257    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
2    17954003    rs148607792    G    A    415.27    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.139;DB;DP=34;Dels=0.0;FS=1.441;HRun=0;HaplotypeScore=0.5784;MQ=59.32;MQ0=0;MQRankSum=0.035;QD=12.21;ReadPosRankSum=0.277;SNPEFF_AMINO_ACID_CHANGE=R302H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17953901_17954051;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317402    GT:AD:DP:GQ:PL    0/1:19,15:34:99:445,0,629
2    17954027    rs300175    G    A    1092.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=S310N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17953901_17954051;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317402    GT:AD:DP:GQ:PL    1/1:0,33:33:84.26:1125,84,0
2    17954140    rs300176    A    G    33.72    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=4.82;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317402    GT:AD:DP:GQ:PL    0/1:4,3:7:63.71:64,0,144
2    17954421    rs300177    C    G    615.49    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=42;Dels=0.0;FS=4.558;HRun=0;HaplotypeScore=2.5525;MQ=59.45;MQ0=0;MQRankSum=1.059;QD=14.65;ReadPosRankSum=0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317402    GT:AD:DP:GQ:PL    0/1:20,22:42:99:645,0,605
2    17959099    rs2615049    T    G    184.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.42;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534451    GT:AD:DP:GQ:PL    0/1:4,6:10:99:214,0,130
2    17959420    rs10535305    TAC    T    158.61    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=129.543;IndelType=D;MQ=52.81;MQ0=0;MQRankSum=-0.663;QD=9.33;ReadPosRankSum=0.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534451    GT:AD:DP:GQ:PL    0/1:12,5:17:99:198,0,221
2    17959443    rs71402623    A    G    174.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.62;MQ0=0;MQRankSum=-1.932;QD=14.58;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534451    GT:AD:DP:GQ:PL    0/1:4,8:12:99:205,0,131
2    17959464    rs10535307    CAT    C    225.08    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=112.6398;IndelType=D;MQ=42.94;MQ0=0;MQRankSum=-2.166;QD=20.46;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534451    GT:AD:DP:GQ:PL    0/1:4,7:11:99:264,0,132
2    17962450    rs300168    A    G    597.46    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=41;Dels=0.0;FS=4.561;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.369;QD=14.57;ReadPosRankSum=0.196;SNPEFF_AMINO_ACID_CHANGE=E294;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17961888_17962993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536097    GT:AD:DP:GQ:PL    0/1:21,20:41:99:627,0,679
2    17962518    rs300169    C    T    1116.04    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.521;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9856;MQ=59.2;MQ0=0;MQRankSum=1.407;QD=19.24;ReadPosRankSum=-1.716;SNPEFF_AMINO_ACID_CHANGE=T317I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17961888_17962993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536097    GT:AD:DP:GQ:PL    0/1:24,34:58:99:1146,0,740
2    17998025    rs34069439    A    T    879.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.37;MQ0=0;QD=28.37;SNPEFF_AMINO_ACID_CHANGE=E80D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17997763_17998368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSGN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281047    GT:AD:DP:GQ:PL    1/1:0,30:31:72.21:913,72,0
2    17998095    rs35858730    C    T    721.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.13;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=H104Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17997763_17998368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSGN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281047    GT:AD:DP:GQ:PL    1/1:0,25:25:60.18:754,60,0
2    17998331    rs13001625    T    C    1317.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.41;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=L182;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_17997763_17998368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSGN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281047    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1351,102,0
2    18112473    rs4240213    G    A    2752.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=37.71;SNPEFF_AMINO_ACID_CHANGE=E66;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_18112217_18114228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304101    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2786,211,0
2    18757501    rs3902946    G    C    895.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.905;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.23;MQ0=0;MQRankSum=0.599;QD=14.93;ReadPosRankSum=0.214;SNPEFF_AMINO_ACID_CHANGE=L426;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_18757450_18757634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304081    GT:AD:DP:GQ:PL    0/1:30,30:60:99:926,0,826
2    18765728    rs35590292    A    G    112.13    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.43;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416783    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:142,0,27
2    18768850    rs16985306    A    G    714.82    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.115;DB;DP=64;Dels=0.0;FS=2.327;HRun=2;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.373;QD=11.17;ReadPosRankSum=1.995;SNPEFF_AMINO_ACID_CHANGE=P13;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_18768769_18768858;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C1B-RDH14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444297    GT:AD:DP:GQ:PL    0/1:38,26:64:99:745,0,1098
2    18770540    rs6720633    G    C    202.51    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.742;QD=28.93;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C1B-RDH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444297    GT:AD:DP:GQ:PL    0/1:1,6:7:18.24:232,0,18
2    20096936    rs7563410    C    A    314.34    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=30;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.185;QD=10.48;ReadPosRankSum=-0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431392    GT:AD:DP:GQ:PL    0/1:16,14:30:99:344,0,508
2    20097874    rs12328613    T    C    661.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333610    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:694,51,0
2    20101363    rs7584726    G    A    485.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333610    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:519,39,0
2    20101487    rs2304589    G    A    1110.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=S43;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20101467_20101747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333610    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1143,87,0
2    20101717    rs2304588    A    G    253.96    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.135;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=11.54;ReadPosRankSum=0.534;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431392    GT:AD:DP:GQ:PL    0/1:13,9:22:99:284,0,441
2    20101832    rs2278528    C    G    128.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333610    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    20130145    rs28502265    T    G    2215.18    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=3.363;DB;DP=185;Dels=0.0;FS=4.431;HRun=2;HaplotypeScore=4.365;MQ=60.0;MQ0=0;MQRankSum=0.216;QD=11.97;ReadPosRankSum=0.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453014    GT:AD:DP:GQ:PL    0/1:101,83:185:99:2245,0,2936
2    20131184    rs1191779    C    A    1906.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.7051;MQ=59.25;MQ0=0;QD=30.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453014    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1939,144,0
2    20133346    rs2293670    C    T    109.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=9.94;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453014    GT:AD:DP:GQ:PL    0/1:5,5:11:99:139,0,143
2    20135283    rs6741091    T    C    1948.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=30.44;SNPEFF_AMINO_ACID_CHANGE=E378;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20134793_20135364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453014    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1981,156,0
2    20137864    rs2293671    T    C    171.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.66;MQ0=0;MQRankSum=-1.447;QD=17.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281405    GT:AD:DP:GQ:PL    0/1:4,6:10:99:202,0,136
2    20153444    rs190463759    C    G    128.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.72;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281405    GT:AD:DP:GQ:PL    0/1:6,5:11:99:159,0,210
2    20161852    rs10165128    T    G    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281405    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    20166278    rs7572536    A    G    35.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.9;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281405    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:66,0,34
2    20173255    rs10153717    A    C    651.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281405    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:685,51,0
2    20189015    rs1060742    T    C    938.01    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.244;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9849;MQ=59.69;MQ0=0;MQRankSum=3.616;QD=12.68;ReadPosRankSum=0.964;SNPEFF_AMINO_ACID_CHANGE=Q18R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20188926_20189043;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281405    GT:AD:DP:GQ:PL    0/1:39,35:74:99:968,0,1252
2    20189089    rs3731663    C    T    1145.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407540    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1178,87,0
2    20192696    rs7569975    G    A    161.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421259    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:194,15,0
2    20194036    rs3820949    G    C    1963.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478482    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1996,147,0
2    20202738    rs16987282    T    C    114.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.361;QD=12.71;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407540    GT:AD:DP:GQ:PL    0/1:5,4:9:99:144,0,142
2    20202930    rs77245812    G    A    1442.30    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=4.576;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=0.118;QD=17.38;ReadPosRankSum=-0.771;SNPEFF_AMINO_ACID_CHANGE=T303M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20202922_20203047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407540    GT:AD:DP:GQ:PL    0/1:39,44:83:99:1472,0,1002
2    20205423    rs5829721    A    AAAAG    847.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=35.1395;IndelType=I;MQ=59.89;MQ0=0;QD=70.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407540    GT:AD:DP:GQ:PL    1/1:0,11:12:36.12:889,36,0
2    20205680    rs28401180    C    T    1173.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.7;MQ0=0;QD=27.93;SNPEFF_AMINO_ACID_CHANGE=E205;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20205505_20206071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407540    GT:AD:DP:GQ:PL    1/1:0,42:42:96.28:1206,96,0
2    20205848    rs28598872    G    A    2134.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.516;DB;DP=66;Dels=0.0;FS=3.748;HRun=0;HaplotypeScore=4.6112;MQ=59.43;MQ0=0;MQRankSum=-0.541;QD=32.34;ReadPosRankSum=0.433;SNPEFF_AMINO_ACID_CHANGE=A149;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20205505_20206071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407540    GT:AD:DP:GQ:PL    1/1:2,64:66:99:2167,126,0
2    20233929    rs936509    C    T    364.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000175091    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
2    20401858    rs11350492    TA    T    52.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=17;HaplotypeScore=141.2607;IndelType=D;MQ=55.45;MQ0=0;QD=4.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429035    GT:AD:DP:GQ:PL    1/1:0,9:12:18.42:95,18,0
2    20403794    rs10205485    A    T    950.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=L136Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20403574_20404052;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254351    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:984,72,0
2    20404903    rs6714433    G    A    41.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=8.39;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254351    GT:AD:DP:GQ:PL    0/1:2,3:5:58.38:72,0,58
2    20405004    rs3732166    C    T    324.31    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=27;Dels=0.0;FS=9.455;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.675;QD=12.01;ReadPosRankSum=0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254351    GT:AD:DP:GQ:PL    0/1:15,12:27:99:354,0,430
2    20405050    rs6531225    A    C    1397.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254351    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1430,111,0
2    20455176    rs111928251    GT    G    69.47    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=17;FS=0.0;HRun=14;HaplotypeScore=65.4474;IndelType=D;MQ=57.17;MQ0=0;MQRankSum=-1.791;QD=4.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319801    GT:AD:DP:GQ:PL    0/1:10,7:17:99:108,0,151
2    20462852    rs3796066    G    C    210.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9825;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=15.02;ReadPosRankSum=0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319801    GT:AD:DP:GQ:PL    0/1:7,7:14:99:240,0,242
2    20497603    rs74519552    A    C    71.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.21;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319801    GT:AD:DP:GQ:PL    0/1:2,3:5:61.25:101,0,61
2    20699524    rs73227385    C    T    31.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC012065.4;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,2:5:61.32:61,0,105
2    20699667    rs342089    C    G    701.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=28.04;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC012065.4;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,25:25:60.17:734,60,0
2    20699801    rs11679514    C    G    72.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.536;QD=6.02;ReadPosRankSum=-1.835;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC012065.4;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,4:12:99:102,0,250
2    20700900    rs342088    A    G    500.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC012065.4;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:533,39,0
2    20729746    rs4666416    T    C    383    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.21;MQ0=0;QD=29.46;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:416,36,0
2    20792173    rs11096678    T    A    937.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.14;MQ0=0;QD=34.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446825    GT:AD:DP:GQ:PL    1/1:1,26:27:72.22:971,72,0
2    20792408    rs11096679    T    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446825    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
2    20818193    rs3732154    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458740    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
2    20818286    rs3821217    A    C    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458740    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    20818454    rs3732152    T    A    696.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458740    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:729,54,0
2    20818458    rs3732151    G    A    332.25    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=23;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.523;QD=14.45;ReadPosRankSum=-1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458740    GT:AD:DP:GQ:PL    0/1:12,11:23:99:362,0,308
2    20818517    rs3732150    T    C    295.24    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=18;Dels=0.0;FS=2.003;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.362;QD=16.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458740    GT:AD:DP:GQ:PL    0/1:7,11:18:99:325,0,200
2    20822218    rs4666444    T    C    408.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:442,39,0
2    20823612    rs13030108    A    G    90.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
2    20823724    rs6531248    T    C    417.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=27.83;SNPEFF_AMINO_ACID_CHANGE=P103;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20823656_20823791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458740    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:450,33,0
2    20823850    rs6733419    T    C    145.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:179,15,0
2    20823858    rs2305459    C    T    138.28    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=17.29;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    0/1:1,7:8:23.18:168,0,23
2    20824303    rs77454156    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    20824498    rs2305458    C    T    346.05    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=27;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.734;MQ=59.31;MQ0=0;MQRankSum=-1.312;QD=12.82;ReadPosRankSum=-0.694;SNPEFF_AMINO_ACID_CHANGE=V260M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20824492_20824652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    0/1:12,15:27:99:376,0,349
2    20824559    rs2305457    C    T    500.88    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-1.799;QD=13.91;ReadPosRankSum=0.43;SNPEFF_AMINO_ACID_CHANGE=E239;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20824492_20824652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    0/1:16,20:36:99:531,0,477
2    20824658    rs10199441    G    A    519.73    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.9;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.45;MQ0=0;MQRankSum=-1.004;QD=12.37;ReadPosRankSum=-0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    0/1:20,22:42:99:550,0,569
2    20824691    rs17663045    C    T    445.60    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=35;Dels=0.0;FS=3.217;HRun=0;HaplotypeScore=0.9469;MQ=59.34;MQ0=0;MQRankSum=-0.513;QD=12.73;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    0/1:19,16:35:99:476,0,464
2    20824708    rs10191266    T    C    391.64    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.712;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.172;QD=13.5;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    0/1:14,15:29:99:422,0,424
2    20827414    rs10186292    C    A    550.46    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.678;DB;DP=52;Dels=0.0;FS=2.6;HRun=0;HaplotypeScore=2.0463;MQ=59.56;MQ0=0;MQRankSum=-0.093;QD=10.59;ReadPosRankSum=-1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    0/1:31,21:52:99:580,0,716
2    20827425    rs6531250    A    G    1432.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1465,108,0
2    20838318    rs3796064    G    A    491.86    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.904;DB;DP=45;Dels=0.0;FS=2.638;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=10.93;ReadPosRankSum=0.434;SNPEFF_AMINO_ACID_CHANGE=F167;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20838196_20838412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    0/1:28,17:45:99:522,0,708
2    20838560    rs7596314    A    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406618    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    20845273    rs2304423    G    A    644.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HS1BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304031    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:677,51,0
2    20870579    rs13013489    G    A    68.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=13.76;SNPEFF_AMINO_ACID_CHANGE=R249;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20870224_20873418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272224    GT:AD:DP:GQ:PL    1/1:1,4:5:9.01:101,9,0
2    20871190    rs4666457    A    C    118.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.97;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272224    GT:AD:DP:GQ:PL    1/1:0,7:7:12.03:151,12,0
2    20871293    rs1564696    A    G    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272224    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    20885321    rs17663874    C    A    475.90    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.287;DB;DP=54;Dels=0.0;FS=4.289;HRun=3;HaplotypeScore=1.9158;MQ=60.0;MQ0=0;MQRankSum=-0.02;QD=8.81;ReadPosRankSum=0.605;SNPEFF_AMINO_ACID_CHANGE=L227F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_20885307_20885417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403006    GT:AD:DP:GQ:PL    0/1:36,17:54:99:506,0,1089
2    21225281    rs1042034    C    T    450.24    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=38;Dels=0.0;FS=5.124;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.587;QD=11.85;ReadPosRankSum=-0.763;SNPEFF_AMINO_ACID_CHANGE=S4338N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_21224301_21226206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:21,17:38:99:480,0,711
2    21225753    rs1042031    C    T    910.64    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.374;DB;DP=54;Dels=0.0;FS=3.958;HRun=2;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.252;QD=16.86;ReadPosRankSum=0.966;SNPEFF_AMINO_ACID_CHANGE=E4181K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_21224301_21226206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:24,30:54:99:941,0,750
2    21227383    rs1800479    C    G    1254.58    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.005;DB;DP=75;Dels=0.0;FS=1.925;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.005;QD=16.73;ReadPosRankSum=-0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:36,39:75:99:1285,0,1220
2    21231524    rs676210    G    A    1312.83    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=93;Dels=0.0;FS=2.892;HRun=0;HaplotypeScore=1.7356;MQ=58.81;MQ0=0;MQRankSum=-0.759;QD=13.97;ReadPosRankSum=-0.219;SNPEFF_AMINO_ACID_CHANGE=P2739L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_21227952_21235523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:48,44:93:99:1343,0,1494
2    21232803    rs584542    T    C    2906.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=I2313V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_21227952_21235523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2939,223,0
2    21235475    rs568413    T    C    1363.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=Y1422C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_21227952_21235523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1397,102,0
2    21236482    rs488329    A    G    1147.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.299;MQ=59.32;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    1/1:0,34:34:90.25:1181,90,0
2    21237238    rs3749054    A    T    273.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.604;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=13.04;ReadPosRankSum=0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:9,12:21:99:304,0,311
2    21241744    rs12720828    C    T    335.47    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=20.97;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:6,10:16:99:365,0,203
2    21249716    rs12691202    C    T    525.91    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DB;DP=39;Dels=0.0;FS=2.873;HRun=0;HaplotypeScore=1.9996;MQ=59.41;MQ0=0;MQRankSum=-1.213;QD=13.48;ReadPosRankSum=0.424;SNPEFF_AMINO_ACID_CHANGE=V730I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_21249660_21249836;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:21,18:39:99:556,0,675
2    21250914    rs679899    G    A    3121.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=A618V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_21250700_21250937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3155,241,0
2    21251040    rs570877    T    G    1354.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1388,111,0
2    21252365    rs67556837    GAGGA    G    358.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=48.6639;IndelType=D;MQ=63.51;MQ0=0;QD=39.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:400,27,0
2    21260601    rs550619    G    A    127.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
2    21263639    rs531819    T    G    69.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.97;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:2,3:5:53.89:100,0,54
2    21265141    rs661665    C    A    282.03    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.367;QD=14.84;ReadPosRankSum=1.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:9,10:19:99:312,0,319
2    21265518    rs12714264    A    T    104.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.03;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233242    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,140
2    21360583    rs312966    A    G    1088.09    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=84;Dels=0.0;FS=7.583;HRun=0;HaplotypeScore=0.9894;MQ=59.73;MQ0=0;MQRankSum=1.065;QD=12.95;ReadPosRankSum=-0.553;SNPEFF_AMINO_ACID_CHANGE=M82V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_21360337_21366144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010872.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405799    GT:AD:DP:GQ:PL    0/1:45,39:84:99:1118,0,1525
2    23907532    rs66787697    TCTC    T    537.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=84.7848;IndelType=D;MQ=60.5;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486442    GT:AD:DP:GQ:PL    1/1:5,14:19:42.13:580,42,0
2    23919375    rs3795942    C    T    599.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=H699;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_23919203_23919383;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000486442    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:633,48,0
2    23925980    rs12466745    T    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486442    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    23926506    rs77064076    C    T    215.42    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.031;DB;DP=26;Dels=0.0;FS=8.587;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.975;QD=8.29;ReadPosRankSum=0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486442    GT:AD:DP:GQ:PL    0/1:16,10:26:99:245,0,565
2    23926659    rs3795948    T    C    482.22    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.69;DB;DP=51;Dels=0.0;FS=1.142;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=9.46;ReadPosRankSum=0.425;SNPEFF_AMINO_ACID_CHANGE=A790;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_23926589_23926733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000486442    GT:AD:DP:GQ:PL    0/1:32,19:51:99:512,0,954
2    23929181    rs4233702    G    T    30.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.73;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486442    GT:AD:DP:GQ:PL    0/1:2,2:4:60.89:61,0,68
2    23929321    .    C    CCTAA    825.16    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.085;DP=20;FS=4.775;HRun=0;HaplotypeScore=67.8142;IndelType=I;MQ=58.22;MQ0=0;MQRankSum=-1.056;QD=41.26;ReadPosRankSum=1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486442    GT:AD:DP:GQ:PL    0/1:9,11:20:99:864,0,304
2    23985329    rs2712070    A    T    861.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238789    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:895,66,0
2    24009163    rs9636434    A    G    214.20    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=10.71;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238789    GT:AD:DP:GQ:PL    0/1:11,9:20:99:244,0,395
2    24042357    rs9967832    C    T    110.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=47.12;MQ0=0;QD=27.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458510    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
2    24042550    rs2879639    C    T    1331.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.74;MQ0=0;QD=35.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458510    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1365,99,0
2    24042842    rs193002099    T    A    122.61    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=16;Dels=0.0;FS=4.26;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.224;QD=7.66;ReadPosRankSum=-1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458510    GT:AD:DP:GQ:PL    0/1:10,6:16:99:153,0,361
2    24055058    rs10432637    G    C    1118.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=28.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238789    GT:AD:DP:GQ:PL    1/1:0,39:39:81.27:1151,81,0
2    24057125    rs113028226    G    A    69.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.66;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238789    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,108
2    24108652    rs7579201    T    C    2681.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=Q207R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_24108597_24108699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238789    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2714,214,0
2    24110611    rs17762465    G    C    1320.43    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=3.168;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.63;MQ0=0;MQRankSum=-0.794;QD=20.96;ReadPosRankSum=0.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238789    GT:AD:DP:GQ:PL    0/1:25,38:63:99:1350,0,831
2    24110657    rs75512051    A    T    1884.01    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.263;DB;DP=123;Dels=0.0;FS=9.734;HRun=0;HaplotypeScore=3.6919;MQ=59.81;MQ0=0;MQRankSum=0.32;QD=15.32;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238789    GT:AD:DP:GQ:PL    0/1:58,64:123:99:1914,0,1864
2    24110911    rs71402523    G    GA    258.92    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.898;DB;DP=23;FS=4.102;HRun=10;HaplotypeScore=46.0645;IndelType=I;MQ=60.47;MQ0=0;MQRankSum=0.272;QD=11.26;ReadPosRankSum=-0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238789    GT:AD:DP:GQ:PL    0/1:12,11:23:99:298,0,118
2    24193947    rs10166036    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UBXN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309033    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    24194314    rs1533440    C    T    1919.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.9966;MQ=59.24;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UBXN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309033    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1952,159,0
2    24236496    rs56036119    T    A    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.48;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338315    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:68,0,66
2    24246175    rs12989842    C    T    1574.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495018    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1608,120,0
2    24246679    rs925228    A    G    1716.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6006;MQ=59.57;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338315    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1750,135,0
2    24255862    rs10179142    C    G    1700.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295148    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1733,132,0
2    24307250    rs36207095    G    A    57.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=54.75;MQ0=0;MQRankSum=-1.3;QD=8.15;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008073.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460686    GT:AD:DP:GQ:PL    0/1:4,3:7:87.03:87,0,148
2    24307260    .    A    G    57.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=54.75;MQ0=0;MQRankSum=-1.3;QD=8.15;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008073.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460686    GT:AD:DP:GQ:PL    0/1:4,3:7:87.04:87,0,128
2    24369674    rs11693860    C    T    988.48    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.721;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4641;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=14.12;ReadPosRankSum=0.955;SNPEFF_AMINO_ACID_CHANGE=N166;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_24369618_24369705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008073.6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407625    GT:AD:DP:GQ:PL    0/1:34,36:70:99:1018,0,826
2    24384424    rs4665667    T    C    456.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.795;DB;DP=60;Dels=0.0;FS=2.277;HRun=2;HaplotypeScore=0.9332;MQ=59.62;MQ0=0;MQRankSum=-0.147;QD=7.61;ReadPosRankSum=0.718;SNPEFF_AMINO_ACID_CHANGE=P245;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_24384376_24384483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008073.6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407625    GT:AD:DP:GQ:PL    0/1:36,24:60:99:487,0,1195
2    24387178    rs113322110    G    GC    704.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.722;DB;DP=38;FS=0.0;HRun=1;HaplotypeScore=84.9808;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=18.54;ReadPosRankSum=0.988;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_24387068_24387204;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008073.6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000407625    GT:AD:DP:GQ:PL    0/1:19,19:38:99:744,0,590
2    24390517    rs2288072    G    A    465.36    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.53;DB;DP=32;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.755;QD=14.54;ReadPosRankSum=0.34;SNPEFF_AMINO_ACID_CHANGE=G318D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_24390496_24390552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008073.6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407625    GT:AD:DP:GQ:PL    0/1:15,17:32:99:495,0,489
2    24398281    rs2042467    T    G    94.95    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.78;MQ0=0;MQRankSum=-0.324;QD=5.0;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295150    GT:AD:DP:GQ:PL    0/1:14,5:19:99:125,0,433
2    24398446    rs2042468    A    T    339.62    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=11.71;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295150    GT:AD:DP:GQ:PL    0/1:16,13:29:99:370,0,539
2    24398573    .    G    T    30.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295150    GT:AD:DP:GQ:PL    0/1:4,2:6:60.52:61,0,148
2    24402127    rs61193015    C    CAA    1606.12    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.167;DB;DP=67;FS=0.986;HRun=3;HaplotypeScore=178.059;IndelType=I;MQ=60.62;MQ0=0;MQRankSum=0.206;QD=23.97;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295150    GT:AD:DP:GQ:PL    0/1:36,31:67:99:1645,0,1462
2    24432211    rs2303293    C    T    74.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.49;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    0/1:3,3:6:85.24:105,0,85
2    24432620    rs2303294    A    G    130.30    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.513;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.146;QD=7.66;ReadPosRankSum=-1.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    0/1:10,7:17:99:160,0,354
2    24432667    rs2303295    C    G    364.97    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.46;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.38;QD=9.86;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    0/1:22,15:37:99:395,0,763
2    24439048    rs3731625    A    G    1288.08    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=78;Dels=0.0;FS=0.87;HRun=0;HaplotypeScore=0.9979;MQ=59.41;MQ0=0;MQRankSum=-1.037;QD=16.51;ReadPosRankSum=-0.055;SNPEFF_AMINO_ACID_CHANGE=I1260T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_24438918_24439101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361999    GT:AD:DP:GQ:PL    0/1:36,42:78:99:1318,0,1062
2    24439276    rs13021828    G    C    100.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=20.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406921    GT:AD:DP:GQ:PL    1/1:1,4:5:12.02:133,12,0
2    24440997    rs2551183    A    T    448.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406921    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:482,36,0
2    24475205    rs4450560    T    C    2268.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    1/1:0,65:66:99:2302,172,0
2    24484150    rs4665680    T    C    565.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:599,45,0
2    24498839    rs4411652    T    G    248.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
2    24507806    rs60485384    G    A    298.87    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1445;MQ=51.18;MQ0=0;MQRankSum=1.209;QD=12.45;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412011    GT:AD:DP:GQ:PL    0/1:10,13:24:99:329,0,246
2    24518796    rs4233705    C    T    359.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:392,30,0
2    24521493    rs7559133    C    T    1898.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1932,141,0
2    24521766    rs6707600    C    T    967.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1000,75,0
2    24524958    rs7603997    C    T    368.16    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.785;DB;DP=29;Dels=0.0;FS=1.637;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.074;QD=12.7;ReadPosRankSum=0.153;SNPEFF_AMINO_ACID_CHANGE=V291I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_24524834_24524971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    0/1:13,16:29:99:398,0,348
2    24550867    rs67389058    CA    C    296.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DB;DP=35;FS=0.0;HRun=14;HaplotypeScore=198.0133;IndelType=D;MQ=56.95;MQ0=0;MQRankSum=0.413;QD=8.49;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355123    GT:AD:DP:GQ:PL    1/1:8,22:35:31.63:339,32,0
2    24896389    rs4665712    T    G    454.59    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.805;QD=14.66;ReadPosRankSum=-0.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    0/1:11,20:31:99:485,0,365
2    24905684    rs55860996    C    CA    246.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=10.8847;IndelType=I;MQ=61.78;MQ0=0;QD=41.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:288,18,0
2    24905927    rs11125744    G    C    1665.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=T154;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_24905820_24905997;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1698,123,0
2    24914125    rs2119120    C    T    174.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
2    24933689    rs7593430    A    C    179.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:213,15,0
2    24952712    .    CT    C    233.83    PASS    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=0.096;DP=79;FS=4.41;HRun=13;HaplotypeScore=518.7737;IndelType=D;MQ=52.22;MQ0=0;MQRankSum=-1.466;QD=2.96;ReadPosRankSum=1.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    0/1:56,19:79:99:273,0,604
2    24952740    rs11439247    C    CT    2197.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=217.8028;IndelType=I;MQ=48.29;MQ0=0;QD=44.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    1/1:3,46:49:99:2239,141,0
2    24962137    rs10865308    C    T    44.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    1/1:0,5:5:8.98:77,9,0
2    24962138    rs6739575    A    G    44.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    1/1:0,5:5:8.98:77,9,0
2    24962252    rs3820933    G    A    203.14    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=13.54;ReadPosRankSum=0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288599    GT:AD:DP:GQ:PL    0/1:8,7:15:99:233,0,268
2    24974945    rs11125763    T    G    2506.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=L1116;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_24974851_24975025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCOA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407230    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2540,190,0
2    25013523    rs12471620    G    C    88.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=8.86;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTRHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492046    GT:AD:DP:GQ:PL    0/1:6,4:10:99:119,0,226
2    25022328    rs12475751    G    C    81.84    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.37;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CENPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260662    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:112,0,30
2    25022442    rs113446228    TA    T    397.47    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=1.703;DB;DP=49;FS=11.421;HRun=13;HaplotypeScore=184.9908;IndelType=D;MQ=59.03;MQ0=0;MQRankSum=-0.341;QD=8.11;ReadPosRankSum=-0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CENPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260662    GT:AD:DP:GQ:PL    0/1:21,27:49:99:436,0,239
2    25037489    rs67044003    TCA    T    464.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=74.102;IndelType=D;MQ=59.42;MQ0=0;QD=22.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260600    GT:AD:DP:GQ:PL    1/1:6,15:21:42.13:507,42,0
2    25038268    rs2082881    G    A    898.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=33.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260600    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:931,72,0
2    25039804    rs2099505    G    A    811.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260600    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:844,63,0
2    25040335    rs67615331    C    CAAAAAAA    1303.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=10;HaplotypeScore=256.7137;IndelType=I;MQ=34.64;MQ0=0;QD=68.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260600    GT:AD:DP:GQ:PL    1/1:9,5:19:47.37:1346,47,0
2    25040423    rs10178420    G    A    1413.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.64;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260600    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1447,111,0
2    25045340    .    G    C    588.98    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.767;DP=84;Dels=0.0;FS=2.055;HRun=0;HaplotypeScore=1.5449;MQ=58.89;MQ0=0;MQRankSum=1.431;QD=7.01;ReadPosRankSum=-1.664;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455323    GT:AD:DP:GQ:PL    0/1:56,27:84:99:619,0,1704
2    25046090    rs1127568    T    C    305.29    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=21;Dels=0.0;FS=1.971;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.951;QD=14.54;ReadPosRankSum=-0.458;SNPEFF_AMINO_ACID_CHANGE=S544;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25046078_25046224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405392    GT:AD:DP:GQ:PL    0/1:10,11:21:99:335,0,352
2    25046355    rs4665273    T    C    63.35    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.72;QD=9.05;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450524    GT:AD:DP:GQ:PL    0/1:2,5:7:67.95:93,0,68
2    25047408    rs7604576    A    G    526.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.53;DB;DP=40;Dels=0.0;FS=2.673;HRun=0;HaplotypeScore=0.7887;MQ=59.13;MQ0=0;MQRankSum=0.311;QD=13.15;ReadPosRankSum=1.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450524    GT:AD:DP:GQ:PL    0/1:20,20:40:99:556,0,628
2    25048847    rs2289090    A    G    56.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.46;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450524    GT:AD:DP:GQ:PL    0/1:3,3:6:86.76:87,0,103
2    25049159    rs934611    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450524    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    25050977    rs7566416    T    C    203.78    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.883;DB;DP=22;Dels=0.0;FS=1.801;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.599;QD=9.26;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=E717;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25050771_25051030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415879    GT:AD:DP:GQ:PL    0/1:13,9:22:99:234,0,394
2    25053410    rs12615954    C    T    165.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.054;QD=18.44;ReadPosRankSum=1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454027    GT:AD:DP:GQ:PL    0/1:3,6:9:89.23:196,0,89
2    25057298    rs2278486    C    G    79.65    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=56.35;MQ0=0;MQRankSum=0.546;QD=6.13;ReadPosRankSum=-1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427849    GT:AD:DP:GQ:PL    0/1:6,7:13:99:110,0,102
2    25062634    rs11125810    A    G    276.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433852    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:310,24,0
2    25064079    rs2241757    G    A    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.2;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433852    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,108
2    25064193    rs2241759    G    A    136.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=13.67;ReadPosRankSum=-1.453;SNPEFF_AMINO_ACID_CHANGE=P133;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25064128_25064255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427849    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,151
2    25174007    rs1439097    G    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494239    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    25174012    rs1439096    A    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494239    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    25179893    rs77483992    C    T    809.56    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.292;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.031;QD=20.76;ReadPosRankSum=-0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468467    GT:AD:DP:GQ:PL    0/1:13,25:39:99:840,0,413
2    25194741    rs7593864    G    A    237.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25194687_25194963;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264711    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:270,21,0
2    25314186    rs2918630    T    C    55.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401432    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
2    25344464    rs2276597    G    A    486.32    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=2.243;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=58.13;MQ0=0;MQRankSum=0.146;QD=19.45;ReadPosRankSum=-0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401432    GT:AD:DP:GQ:PL    0/1:8,17:25:99:516,0,203
2    25359254    rs10202934    C    T    101.62    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.29;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264719    GT:AD:DP:GQ:PL    0/1:5,4:9:99:132,0,174
2    25359422    rs3731631    G    A    811.42    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.959;DB;DP=49;Dels=0.0;FS=2.606;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=16.56;ReadPosRankSum=0.274;SNPEFF_AMINO_ACID_CHANGE=L357;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25359392_25359467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405108    GT:AD:DP:GQ:PL    0/1:19,29:49:99:841,0,473
2    25359453    .    G    A    791.03    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DP=43;Dels=0.0;FS=7.514;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=18.4;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=V368I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25359392_25359467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405108    GT:AD:DP:GQ:PL    0/1:16,27:43:99:821,0,481
2    25368005    rs10188516    G    A    39.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.84;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264719    GT:AD:DP:GQ:PL    0/1:3,2:5:69.20:69,0,74
2    25368030    rs10180231    T    C    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264719    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
2    25377176    rs2164808    T    C    2069.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.51;MQ0=0;QD=31.35;SNPEFF_AMINO_ACID_CHANGE=Y642;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25377104_25377230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264719    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2102,171,0
2    25377329    rs2118404    C    T    268.05    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.049;QD=15.77;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264719    GT:AD:DP:GQ:PL    0/1:7,10:17:99:298,0,203
2    25383887    rs1042571    G    A    210.03    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.772;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.096;QD=14.0;ReadPosRankSum=0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395826    GT:AD:DP:GQ:PL    0/1:7,8:15:99:240,0,234
2    25458546    rs2304429    C    T    731.47    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.796;DB;DP=45;Dels=0.0;FS=4.912;HRun=0;HaplotypeScore=0.8321;MQ=59.49;MQ0=0;MQRankSum=1.034;QD=16.25;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461228    GT:AD:DP:GQ:PL    0/1:22,23:45:99:761,0,535
2    25458853    rs79478703    A    G    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461228    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,70
2    25463483    rs2289195    G    A    2004.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.841;MQ=59.16;MQ0=0;MQRankSum=1.673;QD=32.85;ReadPosRankSum=-0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474807    GT:AD:DP:GQ:PL    1/1:1,60:61:99:2037,160,0
2    25466888    rs2289093    G    T    129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470983    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
2    25469502    rs2276598    C    T    702.23    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.895;DB;DP=44;Dels=0.0;FS=3.014;HRun=0;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=0.306;QD=15.96;ReadPosRankSum=-0.721;SNPEFF_AMINO_ACID_CHANGE=L199;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25469489_25469645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402667    GT:AD:DP:GQ:PL    0/1:19,25:44:99:732,0,623
2    25469913    rs2276599    C    T    663.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496570    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:696,54,0
2    25472784    rs11681447    C    T    130.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264709    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
2    25602142    rs2304426    G    A    1114.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489949    GT:AD:DP:GQ:PL    1/1:0,32:32:90.24:1147,90,0
2    25602310    rs2304427    C    T    217.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.656;QD=16.69;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489949    GT:AD:DP:GQ:PL    0/1:6,7:13:99:247,0,156
2    25610287    rs66917623    G    T    198.62    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=10.45;ReadPosRankSum=0.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481841    GT:AD:DP:GQ:PL    0/1:11,8:19:99:229,0,371
2    25650631    rs34648410    A    G    64.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=7.2;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288642    GT:AD:DP:GQ:PL    0/1:6,3:9:94.79:95,0,214
2    25655772    rs7583475    T    C    367.82    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.194;QD=14.15;ReadPosRankSum=-1.248;SNPEFF_AMINO_ACID_CHANGE=A276;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_25655755_25655868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545439    GT:AD:DP:GQ:PL    0/1:10,16:26:99:398,0,318
2    25656880    rs1395949    C    G    3667.75    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=53.8668;MQ=58.85;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288642    GT:AD:DP:GQ:PL    1/1:0,120:121:99:3668,286,0
2    25656889    rs11451153    G    GT    945.46    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.102;DB;DP=109;FS=2.548;HRun=11;HaplotypeScore=690.1437;IndelType=I;MQ=58.72;MQ0=0;MQRankSum=1.365;QD=8.67;ReadPosRankSum=-1.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288642    GT:AD:DP:GQ:PL    0/1:62,40:109:99:984,0,730
2    25705428    rs6751254    T    C    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288642    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
2    25754235    rs539879    T    C    752.24    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.617;DB;DP=57;Dels=0.0;FS=2.236;HRun=2;HaplotypeScore=0.6651;MQ=59.6;MQ0=0;MQRankSum=-0.809;QD=13.2;ReadPosRankSum=1.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288642    GT:AD:DP:GQ:PL    0/1:31,26:57:99:782,0,1033
2    25875401    rs33949722    TA    T    237.95    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=0.554;DB;DP=74;FS=0.0;HRun=16;HaplotypeScore=553.736;IndelType=D;MQ=51.99;MQ0=0;MQRankSum=2.277;QD=3.22;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288642    GT:AD:DP:GQ:PL    0/1:36,31:74:99:277,0,281
2    25973309    rs10178552    C    T    2882.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.43;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272341    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2915,223,0
2    25973405    rs62130128    G    A    714.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=37.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272341    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:747,54,0
2    25976775    rs10171348    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272341    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:83,6,0
2    25982692    rs74867973    T    C    126.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272341    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
2    25990640    rs17680828    T    C    2933.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=35.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497092    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2967,223,0
2    25994412    rs71399322    A    AG    2676.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.274;DB;DP=72;FS=0.0;HRun=3;HaplotypeScore=161.5842;IndelType=I;MQ=61.01;MQ0=0;MQRankSum=0.917;QD=37.17;ReadPosRankSum=1.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272341    GT:AD:DP:GQ:PL    1/1:5,67:72:99:2718,171,0
2    26029407    rs10207926    A    C    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272341    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    26068509    rs6741640    C    T    213.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272341    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
2    26082212    rs13425195    T    C    866.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272341    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:899,66,0
2    26174882    rs41285967    T    C    117.07    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=59.01;MQ0=0;MQRankSum=-0.387;QD=10.64;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475453    GT:AD:DP:GQ:PL    0/1:5,6:11:99:147,0,126
2    26177198    rs17047211    A    G    472.08    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.673;QD=13.88;ReadPosRankSum=-0.293;SNPEFF_AMINO_ACID_CHANGE=Y415;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26177136_26177254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542511    GT:AD:DP:GQ:PL    0/1:18,16:34:99:502,0,597
2    26203678    rs1465878    T    C    1294.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;DB;DP=48;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.655;QD=26.97;ReadPosRankSum=0.115;SNPEFF_AMINO_ACID_CHANGE=Q176R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26203242_26204352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542511    GT:AD:DP:GQ:PL    1/1:1,47:48:74.90:1327,75,0
2    26204640    rs6721440    G    A    1472.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.081;DB;DP=46;Dels=0.0;FS=2.675;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.189;QD=32.0;ReadPosRankSum=1.481;SNPEFF_AMINO_ACID_CHANGE=A49;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26203242_26205366;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264712    GT:AD:DP:GQ:PL    1/1:2,44:46:72.61:1505,73,0
2    26251361    rs4665809    A    G    396.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=24.76;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,16:16:33.10:429,33,0
2    26321526    rs11678157    T    C    575.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RAB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264710    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:608,45,0
2    26350136    rs2289022    G    T    1603.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RAB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264710    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1637,123,0
2    26357748    rs2243834    G    T    452.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RAB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264710    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:486,36,0
2    26399214    rs4665830    G    A    656.16    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.564;DB;DP=49;Dels=0.0;FS=1.162;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.032;QD=13.39;ReadPosRankSum=0.521;SNPEFF_AMINO_ACID_CHANGE=G38;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26399213_26399353;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401533    GT:AD:DP:GQ:PL    0/1:25,24:49:99:686,0,642
2    26399481    rs11675057    C    G    177.69    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=16.15;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401533    GT:AD:DP:GQ:PL    0/1:5,6:11:99:208,0,168
2    26405985    rs10779956    A    G    46.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.59;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401533    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:76,0,32
2    26409950    rs892447    G    A    65.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.88;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    0/1:3,3:6:84.88:95,0,85
2    26413917    rs7260    C    T    129.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401533    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:162,12,0
2    26415088    rs34898931    TA    T    85.86    QDFilter2    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=47;FS=0.0;HRun=15;HaplotypeScore=387.7585;IndelType=D;MQ=54.61;MQ0=0;MQRankSum=0.243;QD=1.83;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401533    GT:AD:DP:GQ:PL    0/1:22,14:47:99:125,0,366
2    26415429    rs5001914    A    G    169.03    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=16.9;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401533    GT:AD:DP:GQ:PL    0/1:4,6:10:99:199,0,130
2    26416301    rs7582341    A    G    139.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=13.99;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401533    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,171
2    26417533    rs1865324    C    A    464.70    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.64;DB;DP=29;Dels=0.0;FS=6.68;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.327;QD=16.02;ReadPosRankSum=-0.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    0/1:14,15:29:99:495,0,475
2    26420708    rs13387855    T    G    251.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.799;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=13.97;ReadPosRankSum=-0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    0/1:10,8:18:99:281,0,344
2    26438276    rs962217    T    C    74.82    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.96;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    0/1:2,3:5:63.73:105,0,64
2    26454996    rs7593175    A    G    707.39    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.994;DB;DP=45;Dels=0.0;FS=2.932;HRun=0;HaplotypeScore=0.9469;MQ=58.45;MQ0=0;MQRankSum=0.242;QD=15.72;ReadPosRankSum=-0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461025    GT:AD:DP:GQ:PL    0/1:15,29:45:99:737,0,429
2    26455002    rs35746418    C    G    434.47    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9235;MQ=58.45;MQ0=0;MQRankSum=-0.967;QD=9.65;ReadPosRankSum=-0.561;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461025    GT:AD:DP:GQ:PL    0/1:27,18:45:99:464,0,805
2    26455127    rs11552518    G    A    522    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=38;Dels=0.0;FS=3.053;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.635;QD=13.74;ReadPosRankSum=0.496;SNPEFF_AMINO_ACID_CHANGE=Y158;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26455028_26455147;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    0/1:19,19:38:99:552,0,681
2    26457267    rs3892649    T    G    408.30    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.724;QD=14.08;ReadPosRankSum=1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    0/1:16,13:29:99:438,0,444
2    26461733    rs2303892    C    G    272.85    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.164;QD=14.36;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    0/1:9,10:19:99:303,0,242
2    26462093    rs12987980    A    T    632.60    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.611;QD=14.38;ReadPosRankSum=-0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    0/1:23,21:44:99:663,0,778
2    26467347    rs62128457    C    A    92.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380649    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
2    26476977    rs10201087    A    G    376.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317799    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:409,30,0
2    26477125    rs3839049    G    GACT    5566.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;FS=0.0;HRun=0;HaplotypeScore=237.8834;IndelType=I;MQ=57.62;MQ0=0;QD=63.98;SNPEFF_AMINO_ACID_CHANGE=-2T;SNPEFF_CODON_CHANGE=-/ACT;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_2_26477115_26477186;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317799    GT:AD:DP:GQ:PL    1/1:4,80:87:99:5566,253,0
2    26501953    rs7604564    C    A    526.55    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.692;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.499;QD=11.45;ReadPosRankSum=-1.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425035    GT:AD:DP:GQ:PL    0/1:26,20:46:99:557,0,910
2    26502768    rs36064164    C    T    326.88    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=56.71;MQ0=0;MQRankSum=0.423;QD=25.14;ReadPosRankSum=1.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425035    GT:AD:DP:GQ:PL    0/1:3,10:13:85.57:357,0,86
2    26502875    rs1056389    T    C    923.02    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.204;DB;DP=65;Dels=0.0;FS=9.288;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.059;QD=14.2;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=V152;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26502862_26502983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405867    GT:AD:DP:GQ:PL    0/1:35,30:65:99:953,0,1116
2    26505858    rs17528590    A    G    732.98    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.196;QD=12.42;ReadPosRankSum=-1.967;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425035    GT:AD:DP:GQ:PL    0/1:35,24:59:99:763,0,1050
2    26507724    rs17528653    T    C    2786.39    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=4.627;DB;DP=193;Dels=0.0;FS=1.303;HRun=0;HaplotypeScore=1.97;MQ=59.88;MQ0=0;MQRankSum=0.106;QD=14.44;ReadPosRankSum=-1.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317799    GT:AD:DP:GQ:PL    0/1:97,96:193:99:2816,0,2665
2    26508187    rs2303894    A    G    137.37    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.25;MQ0=0;MQRankSum=1.453;QD=12.49;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317799    GT:AD:DP:GQ:PL    0/1:6,5:11:99:167,0,172
2    26512733    rs1056632    T    G    518.56    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.677;DB;DP=34;Dels=0.0;FS=4.218;HRun=0;HaplotypeScore=0.734;MQ=59.32;MQ0=0;MQRankSum=1.382;QD=15.25;ReadPosRankSum=-0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317799    GT:AD:DP:GQ:PL    0/1:14,20:34:99:549,0,449
2    26512957    rs1056471    G    C    299.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537713    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
2    26532491    rs2007556    G    T    150.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=15.06;ReadPosRankSum=-0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311519    GT:AD:DP:GQ:PL    0/1:5,5:10:99:181,0,139
2    26532735    rs3856397    G    A    472.36    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.838;DB;DP=29;Dels=0.0;FS=3.032;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.705;QD=16.29;ReadPosRankSum=-0.554;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311519    GT:AD:DP:GQ:PL    0/1:12,17:29:99:502,0,421
2    26533023    rs3851967    C    T    1360.87    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.686;DB;DP=89;Dels=0.0;FS=8.62;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.477;QD=15.12;ReadPosRankSum=-1.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442141    GT:AD:DP:GQ:PL    0/1:42,47:89:99:1391,0,1309
2    26534801    rs7568529    G    A    647.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.202;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.564;QD=13.49;ReadPosRankSum=0.755;SNPEFF_AMINO_ACID_CHANGE=H202Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26533560_26534942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR113;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541401    GT:AD:DP:GQ:PL    0/1:24,24:48:99:678,0,742
2    26536299    rs11886746    C    G    362    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.668;DB;DP=22;Dels=0.0;FS=8.351;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.068;QD=16.45;ReadPosRankSum=-0.735;SNPEFF_AMINO_ACID_CHANGE=P274;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26536245_26536441;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR113;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333478    GT:AD:DP:GQ:PL    0/1:9,13:22:99:392,0,188
2    26536555    rs7566473    T    C    193.85    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=21.54;ReadPosRankSum=-0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433584    GT:AD:DP:GQ:PL    0/1:2,7:9:53.26:224,0,53
2    26536694    rs2052937    C    T    630.61    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=43;Dels=0.0;FS=1.422;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=-0.189;QD=14.67;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=A205T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26536628_26536771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR113;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333478    GT:AD:DP:GQ:PL    0/1:20,23:43:99:661,0,599
2    26537499    rs10187359    A    C    903.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=28.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433584    GT:AD:DP:GQ:PL    1/1:0,32:32:72.23:937,72,0
2    26586067    rs6546938    G    A    170.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260585    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
2    26586209    rs11903683    G    C    2765.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.65;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260585    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2798,208,0
2    26606347    rs13030294    T    A    521.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260585    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:555,42,0
2    26607992    rs934280    T    C    1463.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=29.86;SNPEFF_AMINO_ACID_CHANGE=A175;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26607827_26608007;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447170    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1496,117,0
2    26647277    rs7423300    T    G    3332.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.53;MQ0=0;QD=33.67;SNPEFF_AMINO_ACID_CHANGE=A165;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26647139_26647322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC164;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288710    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3333,253,0
2    26652671    rs4356622    A    G    974.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288710    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1007,81,0
2    26653457    rs4450561    G    A    2933.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=R34H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26653357_26653521;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC164;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442810    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2966,217,0
2    26667615    rs61509377    T    C    1023.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_AMINO_ACID_CHANGE=W399R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26667584_26667816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC164;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288710    GT:AD:DP:GQ:PL    1/1:0,35:36:78.26:1057,78,0
2    26671544    rs4072407    A    G    1866.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.53;MQ0=0;QD=31.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421869    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1900,159,0
2    26676322    rs1402962    A    G    1354.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=E164;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26676188_26676350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC164;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439066    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1387,108,0
2    26677810    rs2280516    A    G    413.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.33;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439066    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:446,36,0
2    26703369    rs6719195    A    G    43.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272371    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
2    26718179    rs34780859    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272371    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    26724725    rs6547079    T    G    380.14    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=25;Dels=0.0;FS=4.678;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=15.21;ReadPosRankSum=0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380499    GT:AD:DP:GQ:PL    0/1:11,14:25:99:410,0,361
2    26726752    rs884390    G    A    417.13    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=20;Dels=0.0;FS=6.539;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.096;QD=20.86;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272371    GT:AD:DP:GQ:PL    0/1:6,14:20:99:447,0,158
2    26739247    rs7575020    T    A    901.97    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.615;DB;DP=49;Dels=0.0;FS=4.694;HRun=0;HaplotypeScore=0.734;MQ=59.05;MQ0=0;MQRankSum=-0.856;QD=18.41;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272371    GT:AD:DP:GQ:PL    0/1:20,29:49:99:932,0,532
2    26739423    rs11687696    T    C    517.73    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.945;DB;DP=54;Dels=0.0;FS=19.109;HRun=1;HaplotypeScore=1.7719;MQ=59.14;MQ0=0;MQRankSum=0.706;QD=9.59;ReadPosRankSum=1.11;SNPEFF_AMINO_ACID_CHANGE=T124;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26739286_26739467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272371    GT:AD:DP:GQ:PL    0/1:34,20:54:99:548,0,1011
2    26741961    rs13031859    G    A    149.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=14.97;ReadPosRankSum=0.741;SNPEFF_AMINO_ACID_CHANGE=R82C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26741878_26741977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272371    GT:AD:DP:GQ:PL    0/1:4,6:10:99:180,0,127
2    26750557    rs10865425    T    C    287.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272371    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
2    26750645    rs1879760    G    A    493.07    PASS    AB=0.24;AC=1;AF=0.50;AN=2;BaseQRankSum=1.623;DB;DP=25;Dels=0.0;FS=3.665;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.032;QD=19.72;ReadPosRankSum=-1.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272371    GT:AD:DP:GQ:PL    0/1:6,19:25:99:523,0,143
2    26794844    rs71399395    AT    A    330.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=40.2728;IndelType=D;MQ=56.38;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329615    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:372,30,0
2    26798893    rs13002673    A    T    1938.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=33.42;SNPEFF_AMINO_ACID_CHANGE=R54W;SNPEFF_CODON_CHANGE=Agg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26798770_26799043;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409392    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1971,150,0
2    26799031    rs2272464    G    A    1555.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=58.96;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=E100K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26798770_26799043;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409392    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1589,117,0
2    26802392    rs2272467    A    T    1050.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288861    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1084,81,0
2    26804122    rs744539    T    G    330.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329615    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:363,27,0
2    26804143    rs744540    T    C    374.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329615    GT:AD:DP:GQ:PL    1/1:0,16:16:30.10:407,30,0
2    26804218    rs935171    G    A    1210.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329615    GT:AD:DP:GQ:PL    1/1:0,39:39:96.29:1244,96,0
2    26804247    rs935172    T    C    1262.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=H136R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_26804075_26804261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403670    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1295,99,0
2    26806545    rs35349779    G    A    356.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329615    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:389,30,0
2    26818006    rs1148962    T    C    1934.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288861    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1968,156,0
2    26818021    rs1148963    C    T    2233.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.73;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288861    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2267,178,0
2    26951449    rs1663002    G    A    132.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.04;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302909    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:165,12,0
2    26997031    rs13007156    G    A    123.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.597;QD=7.74;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344420    GT:AD:DP:GQ:PL    0/1:10,6:16:99:154,0,324
2    27014980    rs12992046    T    C    283.36    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.292;DB;DP=29;Dels=0.0;FS=4.41;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.427;QD=9.77;ReadPosRankSum=1.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CENPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233505    GT:AD:DP:GQ:PL    0/1:18,11:29:99:313,0,645
2    27015118    rs13014800    G    A    489.56    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.552;QD=12.55;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CENPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233505    GT:AD:DP:GQ:PL    0/1:22,17:39:99:520,0,747
2    27015141    rs35344721    G    GC    349.23    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=29;FS=0.0;HRun=2;HaplotypeScore=90.8929;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=12.04;ReadPosRankSum=1.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CENPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233505    GT:AD:DP:GQ:PL    0/1:18,11:29:99:388,0,577
2    27015903    rs2289017    T    C    306.74    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.827;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.38;MQ0=0;MQRankSum=0.373;QD=8.29;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CENPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233505    GT:AD:DP:GQ:PL    0/1:25,12:37:99:337,0,902
2    27015969    rs2289018    G    A    1354.06    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=4.542;DB;DP=97;Dels=0.0;FS=3.21;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.393;QD=13.96;ReadPosRankSum=0.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CENPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233505    GT:AD:DP:GQ:PL    0/1:53,44:97:99:1384,0,1282
2    27016259    rs11687642    A    G    273.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=15.2;ReadPosRankSum=1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CENPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233505    GT:AD:DP:GQ:PL    0/1:9,9:18:99:304,0,296
2    27121394    rs79644076    G    A    2749.81    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.313;DB;DP=199;Dels=0.0;FS=2.003;HRun=1;HaplotypeScore=2.9103;MQ=59.65;MQ0=0;MQRankSum=-0.509;QD=13.82;ReadPosRankSum=-0.276;SNPEFF_AMINO_ACID_CHANGE=R9;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27121364_27121628;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288699    GT:AD:DP:GQ:PL    0/1:104,94:199:99:2780,0,3228
2    27157396    rs920437    G    A    449.52    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=3.944;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.246;QD=17.29;ReadPosRankSum=-0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288699    GT:AD:DP:GQ:PL    0/1:11,15:26:99:480,0,306
2    27157400    rs920436    A    G    794.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288699    GT:AD:DP:GQ:PL    1/1:0,30:30:72.18:828,72,0
2    27157788    rs920435    T    C    60.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288699    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:91,0,30
2    27163044    rs3739085    T    C    453.22    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.78;DB;DP=42;Dels=0.0;FS=2.982;HRun=0;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=1.946;QD=10.79;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288699    GT:AD:DP:GQ:PL    0/1:23,19:42:99:483,0,747
2    27164806    rs3820823    G    A    1302.43    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=89;Dels=0.0;FS=2.91;HRun=0;HaplotypeScore=0.9995;MQ=59.48;MQ0=0;MQRankSum=-0.784;QD=14.63;ReadPosRankSum=1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288699    GT:AD:DP:GQ:PL    0/1:46,43:89:99:1332,0,1221
2    27169842    rs11126784    C    A    296.14    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=17;Dels=0.0;FS=7.911;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.653;QD=17.42;ReadPosRankSum=-1.156;SNPEFF_AMINO_ACID_CHANGE=G558;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27169778_27173219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288699    GT:AD:DP:GQ:PL    0/1:6,11:17:99:326,0,196
2    27246285    rs10865456    C    T    2556.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.2;SNPEFF_AMINO_ACID_CHANGE=H69;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27246200_27246345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPRE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233121    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2590,193,0
2    27249245    rs3754733    A    G    189.29    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.713;QD=9.46;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPRE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402218    GT:AD:DP:GQ:PL    0/1:13,7:20:99:219,0,441
2    27259794    rs13021112    G    A    462.46    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=29;Dels=0.0;FS=1.518;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=15.95;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478980    GT:AD:DP:GQ:PL    0/1:14,15:29:99:492,0,469
2    27260469    rs1124649    G    A    1082.47    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=86;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.1;QD=12.59;ReadPosRankSum=-1.248;SNPEFF_AMINO_ACID_CHANGE=V306M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27260429_27260570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM214;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404032    GT:AD:DP:GQ:PL    0/1:48,38:86:99:1112,0,1521
2    27261329    rs11690454    A    G    1178.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460904    GT:AD:DP:GQ:PL    1/1:0,39:40:93.30:1212,93,0
2    27262763    rs68161854    GGGA    G    1448.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=152.4085;IndelType=D;MQ=55.46;MQ0=0;QD=41.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460904    GT:AD:DP:GQ:PL    1/1:3,32:35:99:1490,99,0
2    27263122    rs1866654    T    C    919.96    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=46;Dels=0.0;FS=16.528;HRun=1;HaplotypeScore=0.9983;MQ=59.5;MQ0=0;MQRankSum=-0.468;QD=20.0;ReadPosRankSum=1.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460904    GT:AD:DP:GQ:PL    0/1:19,27:46:99:950,0,607
2    27276166    rs114452057    C    G    436.41    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.261;DB;DP=31;Dels=0.0;FS=5.449;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.376;QD=14.08;ReadPosRankSum=0.613;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421915    GT:AD:DP:GQ:PL    0/1:15,16:31:99:466,0,529
2    27276202    rs3806520    G    A    498.05    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.68;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=14.23;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421915    GT:AD:DP:GQ:PL    0/1:17,18:35:99:528,0,473
2    27277274    rs10181551    G    A    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421915    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,71
2    27279416    rs2384570    A    G    758.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421915    GT:AD:DP:GQ:PL    1/1:0,27:27:72.16:791,72,0
2    27279820    rs2018138    T    C    135.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.22;MQ0=0;QD=27.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421915    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:168,15,0
2    27280092    rs6711384    T    A    243.15    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=14.3;ReadPosRankSum=-0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421915    GT:AD:DP:GQ:PL    0/1:9,8:17:99:273,0,321
2    27280127    rs6721395    G    A    312.05    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.043;QD=11.56;ReadPosRankSum=0.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421915    GT:AD:DP:GQ:PL    0/1:13,14:27:99:342,0,349
2    27280460    rs7560144    A    G    81.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421915    GT:AD:DP:GQ:PL    0/1:2,3:5:67.19:111,0,67
2    27290525    rs11681145    A    G    1314.01    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.122;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=59.64;MQ0=0;MQRankSum=0.151;QD=10.27;ReadPosRankSum=0.443;SNPEFF_AMINO_ACID_CHANGE=P101;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27290362_27290703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441931    GT:AD:DP:GQ:PL    0/1:70,57:128:99:1344,0,2104
2    27291661    rs7575465    G    A    152.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.378;QD=12.73;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441931    GT:AD:DP:GQ:PL    0/1:6,6:12:99:183,0,207
2    27292651    rs10865461    T    C    223.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=20;Dels=0.0;FS=6.419;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.784;QD=11.16;ReadPosRankSum=-0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441931    GT:AD:DP:GQ:PL    0/1:12,8:20:99:253,0,331
2    27293150    rs1053609    G    T    570.30    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.012;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.978;QD=12.96;ReadPosRankSum=0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441931    GT:AD:DP:GQ:PL    0/1:24,20:44:99:600,0,756
2    27303755    rs2736976    A    G    256.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.62;SNPEFF_AMINO_ACID_CHANGE=Q149R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27303600_27303820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMILIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380320    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:289,21,0
2    27307769    rs2304682    G    C    266.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.515;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.718;QD=13.34;ReadPosRankSum=-1.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMILIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380320    GT:AD:DP:GQ:PL    0/1:10,10:20:99:297,0,277
2    27315021    rs6754356    G    A    91.88    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.85;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=5.74;ReadPosRankSum=-0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260598    GT:AD:DP:GQ:PL    0/1:12,4:16:99:122,0,315
2    27315064    rs6754371    G    A    338.66    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.952;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.391;QD=11.68;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260598    GT:AD:DP:GQ:PL    0/1:16,13:29:99:369,0,373
2    27315252    rs2304681    G    A    487.01    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=35;Dels=0.0;FS=7.302;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.569;QD=13.91;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=V49I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27315200_27315316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260598    GT:AD:DP:GQ:PL    0/1:17,18:35:99:517,0,494
2    27319826    rs9677784    A    G    116.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CGREF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260595    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
2    27321887    rs4665944    A    G    153.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CGREF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260595    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:186,18,0
2    27324036    rs1057394    G    A    216.44    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.927;QD=13.53;ReadPosRankSum=1.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CGREF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260595    GT:AD:DP:GQ:PL    0/1:7,9:16:99:246,0,220
2    27324340    rs11893427    G    A    265.78    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.768;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9684;MQ=59.46;MQ0=0;MQRankSum=-1.523;QD=2.74;ReadPosRankSum=-4.247;SNPEFF_AMINO_ACID_CHANGE=P253;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27323981_27324756;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CGREF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312734    GT:AD:DP:GQ:PL    0/1:68,28:97:99:296,0,2182
2    27324724    rs2384571    G    C    391.54    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.632;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.202;QD=8.16;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=T125;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27324364_27324756;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CGREF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260595    GT:AD:DP:GQ:PL    0/1:30,18:48:99:422,0,932
2    27324751    rs2384572    G    T    380.80    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.544;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.32;MQ0=0;MQRankSum=-0.602;QD=11.2;ReadPosRankSum=-0.071;SNPEFF_AMINO_ACID_CHANGE=I116;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27324364_27324756;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CGREF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260595    GT:AD:DP:GQ:PL    0/1:21,13:34:99:411,0,738
2    27351279    rs1866561    G    A    624.47    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=43;Dels=0.0;FS=5.348;HRun=2;HaplotypeScore=1.8997;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=14.52;ReadPosRankSum=-0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PREB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260643    GT:AD:DP:GQ:PL    0/1:20,23:43:99:654,0,655
2    27351948    rs6715286    T    G    1805.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=59.62;MQ0=0;QD=36.85;SNPEFF_AMINO_ACID_CHANGE=D137E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27351813_27351995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316470    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1839,135,0
2    27354173    rs11126874    C    A    255.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316470    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
2    27355454    rs4665948    A    C    1103.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316470    GT:AD:DP:GQ:PL    1/1:0,33:33:93.26:1137,93,0
2    27359887    rs11121    C    T    105.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.69;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432962    GT:AD:DP:GQ:PL    0/1:4,5:9:99:135,0,141
2    27360773    rs61741796    G    A    231.14    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=16;Dels=0.0;FS=6.286;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=14.45;ReadPosRankSum=1.482;SNPEFF_AMINO_ACID_CHANGE=P142L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27359723_27361562;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335524    GT:AD:DP:GQ:PL    0/1:7,9:16:99:261,0,164
2    27424496    rs1006898    G    A    590.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412471    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:624,45,0
2    27424636    rs1395    G    A    1317.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.13;SNPEFF_AMINO_ACID_CHANGE=S481F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27424534_27424715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310574    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1350,102,0
2    27426256    .    T    G    177.61    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.932;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=58.84;MQ0=0;MQRankSum=-0.317;QD=8.88;ReadPosRankSum=0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401463    GT:AD:DP:GQ:PL    0/1:13,7:20:99:208,0,469
2    27426514    rs1275521    G    C    131.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401463    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
2    27426878    rs1275522    C    T    82.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401463    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    27428147    rs1298361    A    G    436.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401463    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:469,39,0
2    27428295    rs1275524    A    G    1745.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=28.15;SNPEFF_AMINO_ACID_CHANGE=I219;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27428218_27428372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310574    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1778,144,0
2    27428702    rs1275525    A    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401463    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    27428815    rs1275526    C    G    530.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401463    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:564,42,0
2    27428877    rs1275527    C    G    920.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=31.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC5A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401463    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:954,72,0
2    27435250    rs1275533    A    G    80.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.01;SNPEFF_AMINO_ACID_CHANGE=D60G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27434895_27435335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380171    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:112,9,0
2    27435374    rs11608    G    A    36.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380171    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
2    27440785    rs1275536    C    T    1710.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_AMINO_ACID_CHANGE=T41;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27440745_27440884;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264705    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1743,126,0
2    27457613    rs41288819    C    G    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.79;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464159    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,109
2    27466196    rs112312126    C    G    235.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.52;MQ0=0;MQRankSum=0.231;QD=15.71;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487239    GT:AD:DP:GQ:PL    0/1:5,10:15:99:266,0,118
2    27503205    .    A    G    531.98    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.455;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.366;QD=19.0;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC5G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420191    GT:AD:DP:GQ:PL    0/1:10,18:28:99:562,0,326
2    27535311    rs80195355    T    TG    6242.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=153;FS=0.0;HRun=2;HaplotypeScore=367.1723;IndelType=I;MQ=59.85;MQ0=0;QD=40.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPV17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399052    GT:AD:DP:GQ:PL    1/1:4,149:153:99:6242,436,0
2    27550967    rs1049817    A    G    767.66    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.476;DB;DP=44;Dels=0.0;FS=2.751;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-1.598;QD=17.45;ReadPosRankSum=-1.5;SNPEFF_AMINO_ACID_CHANGE=P782;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27550904_27551056;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264720    GT:AD:DP:GQ:PL    0/1:16,28:44:99:798,0,505
2    27556721    rs3739095    G    A    903.27    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.05;ReadPosRankSum=-0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470115    GT:AD:DP:GQ:PL    0/1:32,28:60:99:933,0,1035
2    27558252    rs11684134    A    G    799.15    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.44;QD=12.11;ReadPosRankSum=-1.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470115    GT:AD:DP:GQ:PL    0/1:35,31:66:99:829,0,1028
2    27566520    rs11689803    T    A    236.41    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.977;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=12.44;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264720    GT:AD:DP:GQ:PL    0/1:10,9:19:99:266,0,368
2    27589810    rs2280737    T    C    1998.63    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.307;DB;DP=149;Dels=0.0;FS=1.39;HRun=0;HaplotypeScore=0.734;MQ=59.85;MQ0=0;MQRankSum=-0.859;QD=13.41;ReadPosRankSum=-1.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418146    GT:AD:DP:GQ:PL    0/1:73,76:149:99:2029,0,2227
2    27591804    rs80051818    T    C    234.48    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DB;DP=15;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.872;QD=15.63;ReadPosRankSum=-0.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347454    GT:AD:DP:GQ:PL    0/1:7,8:15:99:264,0,241
2    27592423    rs7602534    C    T    956.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.963;DB;DP=68;Dels=0.0;FS=2.217;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.094;QD=14.07;ReadPosRankSum=0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347454    GT:AD:DP:GQ:PL    0/1:34,34:68:99:987,0,1062
2    27597805    rs3215365    CTT    C    267.70    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;FS=6.154;HRun=2;HaplotypeScore=46.0398;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=22.31;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464279    GT:AD:DP:GQ:PL    0/1:5,7:12:99:307,0,269
2    27598097    rs4665972    T    C    154.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464279    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:187,15,0
2    27599132    rs12475426    G    A    584.10    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.955;DB;DP=50;Dels=0.0;FS=8.273;HRun=0;HaplotypeScore=1.5779;MQ=60.0;MQ0=0;MQRankSum=1.232;QD=11.68;ReadPosRankSum=1.112;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344034    GT:AD:DP:GQ:PL    0/1:26,24:50:99:614,0,829
2    27600239    rs13472    G    A    60.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344034    GT:AD:DP:GQ:PL    1/1:0,3:3:9:93,9,0
2    27604279    rs4582    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233575    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    27606098    rs2384629    A    G    243.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484925    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
2    27606586    rs76984581    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484925    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    27608115    rs1647284    C    T    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484925    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    27656822    rs72540418    G    GA    2465.78    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.392;DB;DP=155;FS=1.417;HRun=1;HaplotypeScore=343.0196;IndelType=I;MQ=60.14;MQ0=0;MQRankSum=-0.362;QD=15.91;ReadPosRankSum=1.236;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356442    GT:AD:DP:GQ:PL    0/1:88,67:155:99:2505,0,2878
2    27657167    rs704791    T    C    122.31    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=13.59;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356442    GT:AD:DP:GQ:PL    0/1:4,5:9:99:152,0,141
2    27659491    rs780102    T    C    82.49    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=16.5;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356442    GT:AD:DP:GQ:PL    0/1:1,4:5:29.19:112,0,29
2    27663215    rs1260341    T    A    666.04    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.445;QD=15.14;ReadPosRankSum=-0.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260570    GT:AD:DP:GQ:PL    0/1:19,25:44:99:696,0,622
2    27663416    rs1260342    G    T    602.72    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=39;Dels=0.0;FS=9.816;HRun=0;HaplotypeScore=1.7781;MQ=60.0;MQ0=0;MQRankSum=-0.576;QD=15.45;ReadPosRankSum=-1.756;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260570    GT:AD:DP:GQ:PL    0/1:19,20:39:99:633,0,623
2    27667297    rs4803    A    G    49.73    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=2.93;ReadPosRankSum=-2.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420854    GT:AD:DP:GQ:PL    0/1:12,5:17:79.73:80,0,347
2    27670307    rs11126999    G    A    588.88    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.441;DB;DP=31;Dels=0.0;FS=8.287;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.846;QD=19.0;ReadPosRankSum=1.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450564    GT:AD:DP:GQ:PL    0/1:14,17:31:99:619,0,368
2    27676287    rs56076827    A    T    1129.09    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.768;DB;DP=60;Dels=0.0;FS=1.008;HRun=0;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;MQRankSum=-0.544;QD=18.51;ReadPosRankSum=1.201;SNPEFF_AMINO_ACID_CHANGE=S1305;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27676251_27676380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260570    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1159,0,884
2    27681598    rs780106    A    C    333.15    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=19;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.454;QD=17.53;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260570    GT:AD:DP:GQ:PL    0/1:8,11:19:99:363,0,260
2    27682850    rs72819536    G    T    167.28    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=15.21;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260570    GT:AD:DP:GQ:PL    0/1:5,6:11:99:197,0,176
2    27684734    rs780107    A    G    559.95    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.608;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.611;QD=12.44;ReadPosRankSum=0.799;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489492    GT:AD:DP:GQ:PL    0/1:24,21:45:99:590,0,691
2    27685388    rs780110    G    A    156.46    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=19.56;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489492    GT:AD:DP:GQ:PL    0/1:2,6:8:62.92:186,0,63
2    27688601    rs1647276    C    T    3487.79    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.163;DB;DP=242;DS;Dels=0.0;FS=16.176;HRun=0;HaplotypeScore=3.7799;MQ=59.43;MQ0=0;MQRankSum=0.883;QD=14.41;ReadPosRankSum=2.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260570    GT:AD:DP:GQ:PL    0/1:120,122:242:99:3488,0,3701
2    27706640    rs2272417    T    C    207.40    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.616;DB;DP=22;Dels=0.0;FS=1.833;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.253;QD=9.43;ReadPosRankSum=-0.833;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475476    GT:AD:DP:GQ:PL    0/1:13,8:22:99:237,0,455
2    27715207    rs8395    T    A    258.98    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.164;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.612;QD=13.63;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476197    GT:AD:DP:GQ:PL    0/1:10,9:19:99:289,0,350
2    27715416    rs2303369    C    T    666.70    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.549;DB;DP=48;Dels=0.0;FS=4.183;HRun=0;HaplotypeScore=0.7887;MQ=59.03;MQ0=0;MQRankSum=-0.439;QD=13.89;ReadPosRankSum=-1.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476197    GT:AD:DP:GQ:PL    0/1:23,24:48:99:697,0,797
2    27716004    rs780088    T    C    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264703    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,69
2    27716494    rs704795    G    A    206.51    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=55.64;MQ0=0;MQRankSum=1.034;QD=18.77;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264703    GT:AD:DP:GQ:PL    0/1:4,7:11:99:237,0,128
2    27721971    rs813592    T    C    268.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.306;DB;DP=20;Dels=0.0;FS=3.245;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=13.45;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCKR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264717    GT:AD:DP:GQ:PL    0/1:10,10:20:99:299,0,351
2    27722416    rs1260320    G    A    398.89    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.24;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.36;MQ0=0;MQRankSum=1.811;QD=13.75;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCKR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264717    GT:AD:DP:GQ:PL    0/1:15,14:29:99:429,0,544
2    27728777    rs2293572    C    G    376.37    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=1.622;DB;DP=41;Dels=0.0;FS=4.175;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;MQRankSum=-0.734;QD=9.18;ReadPosRankSum=1.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCKR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417872    GT:AD:DP:GQ:PL    0/1:25,16:41:99:406,0,756
2    27729480    rs2293571    G    A    523.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.433;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.775;QD=14.53;ReadPosRankSum=-0.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCKR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453813    GT:AD:DP:GQ:PL    0/1:18,18:36:99:553,0,629
2    27730940    rs1260326    T    C    1774.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=L256P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27730844_27730941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCKR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424318    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1808,144,0
2    27731212    rs3817588    T    C    358.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCKR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472290    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:392,30,0
2    27789861    rs965813    T    A    868.98    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=0.459;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=59.71;MQ0=0;MQRankSum=0.214;QD=10.86;ReadPosRankSum=-0.449;SNPEFF_AMINO_ACID_CHANGE=F212I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27789602_27790011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC109829.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447166    GT:AD:DP:GQ:PL    0/1:48,31:79:99:899,0,1544
2    27801403    rs1919125    C    G    453.46    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.549;QD=8.56;ReadPosRankSum=-1.771;SNPEFF_AMINO_ACID_CHANGE=T655S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27799389_27805588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408964    GT:AD:DP:GQ:PL    0/1:34,19:53:99:483,0,1148
2    27801418    rs1919126    C    A    373.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.864;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.798;QD=7.79;ReadPosRankSum=-1.039;SNPEFF_AMINO_ACID_CHANGE=A660E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27799389_27805588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408964    GT:AD:DP:GQ:PL    0/1:32,16:48:99:404,0,1045
2    27802805    rs3811644    A    G    1500.38    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=3.864;DB;DP=92;Dels=0.0;FS=5.374;HRun=0;HaplotypeScore=0.9967;MQ=59.75;MQ0=0;MQRankSum=-1.092;QD=16.31;ReadPosRankSum=1.044;SNPEFF_AMINO_ACID_CHANGE=L1122;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27799389_27805588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408964    GT:AD:DP:GQ:PL    0/1:44,47:92:99:1530,0,1266
2    27804432    rs28381983    T    C    3869.29    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=5.23;DB;DP=246;DS;Dels=0.0;FS=1.589;HRun=2;HaplotypeScore=3.5899;MQ=59.36;MQ0=0;MQRankSum=2.151;QD=15.73;ReadPosRankSum=0.484;SNPEFF_AMINO_ACID_CHANGE=S1665P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27799389_27805588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408964    GT:AD:DP:GQ:PL    0/1:108,138:246:99:3869,0,3144
2    27824168    rs56725354    G    C    290.04    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.184;QD=15.27;ReadPosRankSum=-0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF512;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461705    GT:AD:DP:GQ:PL    0/1:10,9:19:99:320,0,360
2    27838058    rs11127071    C    A    825.08    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.137;DB;DP=75;Dels=0.0;FS=3.183;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=11.0;ReadPosRankSum=-0.178;SNPEFF_AMINO_ACID_CHANGE=L254;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27838035_27838136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF512;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556601    GT:AD:DP:GQ:PL    0/1:44,31:75:99:855,0,1279
2    27838319    rs12233155    T    C    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF512;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355467    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
2    27839107    rs6737921    T    C    300.34    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.236;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.011;QD=10.36;ReadPosRankSum=-1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF512;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355467    GT:AD:DP:GQ:PL    0/1:18,11:29:99:330,0,587
2    27852117    rs60089768    A    AGGTCTT    1832.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.181;DB;DP=38;FS=1.594;HRun=0;HaplotypeScore=280.5533;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=-5.211;QD=48.24;ReadPosRankSum=2.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264718    GT:AD:DP:GQ:PL    0/1:19,19:38:99:1872,0,1140
2    27852150    .    C    CG    756.24    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.59;DP=56;FS=16.519;HRun=5;HaplotypeScore=296.5624;IndelType=I;MQ=53.24;MQ0=0;MQRankSum=-2.61;QD=13.27;ReadPosRankSum=-1.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264718    GT:AD:DP:GQ:PL    0/1:32,25:56:99:795,0,659
2    27852637    rs6547738    A    G    176.26    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.001;QD=12.59;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264718    GT:AD:DP:GQ:PL    0/1:8,6:14:99:206,0,289
2    27855397    rs10173720    A    T    334.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.234;QD=17.61;ReadPosRankSum=-0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478484    GT:AD:DP:GQ:PL    0/1:6,12:19:99:365,0,194
2    27857992    rs4666009    T    A    417.40    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.757;DB;DP=32;Dels=0.0;FS=6.139;HRun=0;HaplotypeScore=0.8321;MQ=55.52;MQ0=0;MQRankSum=-1.359;QD=13.04;ReadPosRankSum=0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478484    GT:AD:DP:GQ:PL    0/1:15,17:32:99:447,0,425
2    27858167    rs10665947    C    CTTTTT    550.56    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=20;FS=0.0;HRun=16;HaplotypeScore=241.7756;IndelType=I;MQ=45.61;MQ0=0;MQRankSum=-2.526;QD=27.53;ReadPosRankSum=-2.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478484    GT:AD:DP:GQ:PL    0/1:13,5:20:71.18:590,0,71
2    27861707    rs11692692    G    A    243.31    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=2.01;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.028;QD=9.01;ReadPosRankSum=0.481;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF512;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556601    GT:AD:DP:GQ:PL    0/1:16,11:27:99:273,0,452
2    27878686    rs4666010    T    C    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264718    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
2    27884878    rs1569152    C    T    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_27883851_27885148;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT7L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406540    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    27887034    rs9678851    C    A    685.44    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.259;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6841;MQ=60.0;MQ0=0;MQRankSum=-1.431;QD=14.28;ReadPosRankSum=1.237;SNPEFF_AMINO_ACID_CHANGE=P139T;SNPEFF_CODON_CHANGE=Ccg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27886338_27887444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A1AP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326019    GT:AD:DP:GQ:PL    0/1:21,27:48:99:715,0,473
2    27930837    rs4665385    C    T    767.53    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=1.208;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.994;QD=13.23;ReadPosRankSum=0.058;SNPEFF_AMINO_ACID_CHANGE=G66R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_27928653_27931363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC074091.13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379677    GT:AD:DP:GQ:PL    0/1:27,31:58:99:798,0,656
2    28002002    rs3792253    T    C    972.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302188    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:1006,78,0
2    28065875    rs34139736    C    G    583.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302188    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:616,45,0
2    28069713    rs11901133    T    G    35.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302188    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
2    28268822    rs1506533    G    A    33.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342045    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
2    28464435    rs6737817    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342045    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    28718897    rs4665423    A    G    791.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416713    GT:AD:DP:GQ:PL    1/1:0,25:25:63.18:825,63,0
2    28748857    rs4666085    T    C    760.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4725;MQ=55.74;MQ0=0;QD=27.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,28:28:63.18:793,63,0
2    28748916    rs10181687    A    C    289.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:322,24,0
2    28752498    rs6728486    T    C    443.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:476,36,0
2    28752555    rs4473343    T    C    1162.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1195,87,0
2    28752727    rs6710800    C    G    504.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:537,42,0
2    28752741    rs6725577    A    G    407.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:440,33,0
2    28761257    rs7589169    A    G    84.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=14.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,5:6:9.03:117,9,0
2    28761282    rs7589254    A    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    28761981    rs6753929    G    C    1670.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=V167L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_28761966_28762032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416713    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1704,126,0
2    28764452    rs13406540    C    T    40.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.07;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416713    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:70,0,36
2    28764458    rs11127163    C    A    124.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416713    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:157,12,0
2    28771624    rs11680168    T    G    283.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
2    28771825    rs185895091    C    G    127.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=15;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=8.5;ReadPosRankSum=-1.827;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:9,6:15:99:157,0,303
2    28771897    rs11680304    T    C    283.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:317,27,0
2    28785754    rs7560628    G    C    130.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
2    28789643    rs10186460    T    C    707.55    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=62;Dels=0.0;FS=2.384;HRun=0;HaplotypeScore=0.8667;MQ=58.64;MQ0=0;MQRankSum=-0.115;QD=11.41;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:36,26:62:99:738,0,1066
2    28789884    rs12714237    G    A    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    28795962    rs13005854    G    A    62.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-1.422;QD=6.91;ReadPosRankSum=-2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:6,3:9:92.14:92,0,195
2    28796291    rs1881251    G    A    79.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.82;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:109,0,31
2    28800894    rs877832    C    T    400.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:433,33,0
2    28802355    rs12466173    G    C    255.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485642    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
2    28804835    rs113898629    GA    G    201.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=12;HaplotypeScore=41.5983;IndelType=D;MQ=61.78;MQ0=0;QD=16.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485642    GT:AD:DP:GQ:PL    1/1:1,10:12:33.74:243,34,0
2    28805410    rs4666102    C    A    386.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485642    GT:AD:DP:GQ:PL    1/1:1,12:13:30.10:420,30,0
2    28808539    rs13393932    G    A    249.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
2    28812285    rs12468715    T    C    1062.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5775;MQ=58.73;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,33:33:84.25:1095,84,0
2    28812982    rs4666105    C    T    2221.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2254,163,0
2    28814033    rs11681826    A    G    3079.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=M396V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_28814000_28814038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329020    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3112,244,0
2    28814185    rs11127175    G    T    398.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481449    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:431,33,0
2    28814548    rs12464271    A    T    1068.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=29.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481449    GT:AD:DP:GQ:PL    1/1:0,36:36:90.26:1102,90,0
2    28814683    rs11127176    T    C    984.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=27.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481449    GT:AD:DP:GQ:PL    1/1:0,36:36:81.25:1017,81,0
2    28816425    rs10176136    T    C    352.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481449    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:385,30,0
2    28816814    rs35712549    C    CTTT    1087.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=14;HaplotypeScore=287.3774;IndelType=I;MQ=47.88;MQ0=0;QD=25.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481449    GT:AD:DP:GQ:PL    1/1:15,17:42:78.21:1129,78,0
2    28816948    rs4665429    C    T    1366.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.99;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481449    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1399,111,0
2    28821662    rs7557359    C    T    605.04    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.047;DB;DP=40;Dels=0.0;FS=1.676;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.856;QD=15.13;ReadPosRankSum=-0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329020    GT:AD:DP:GQ:PL    0/1:18,22:40:99:635,0,584
2    28821739    rs7573845    T    G    220.72    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=13;Dels=0.0;FS=4.15;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=16.98;ReadPosRankSum=-1.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329020    GT:AD:DP:GQ:PL    0/1:5,8:13:99:251,0,136
2    28821832    rs7573949    T    C    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329020    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    28824303    rs1106882    C    G    50.94    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.37;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:5,3:8:80.94:81,0,162
2    28824793    rs7601771    C    G    290.37    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.394;DB;DP=34;Dels=0.0;FS=8.695;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.318;QD=8.54;ReadPosRankSum=0.668;SNPEFF_AMINO_ACID_CHANGE=H868D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_28824766_28824831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422425    GT:AD:DP:GQ:PL    0/1:23,11:34:99:320,0,668
2    28824940    rs67381370    G    A    43.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=4.84;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:6,3:9:73.52:74,0,224
2    28849435    rs10186023    T    C    76.09    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=5.44;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:10,4:14:99:106,0,335
2    28849473    rs899149    T    C    90.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=11.3;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:4,4:8:99:120,0,140
2    28855918    rs112781677    A    AG    1203.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=2;HaplotypeScore=69.4048;IndelType=I;MQ=60.72;MQ0=0;QD=40.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473272    GT:AD:DP:GQ:PL    1/1:0,30:30:87.29:1246,87,0
2    28865675    rs114156553    G    T    77.30    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.731;QD=12.88;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327757    GT:AD:DP:GQ:PL    0/1:1,5:6:27.97:107,0,28
2    29001691    rs1128416    A    G    1128.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_AMINO_ACID_CHANGE=Q39;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29001675_29001905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1CB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455580    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1162,84,0
2    29004923    rs6740859    G    A    116.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1CB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418910    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
2    29041877    rs13009357    T    C    1322.14    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=2.442;DB;DP=75;Dels=0.0;FS=6.691;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.506;QD=17.63;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPDYA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334056    GT:AD:DP:GQ:PL    0/1:29,46:75:99:1352,0,759
2    29045323    rs4436918    C    T    429.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPDYA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449210    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:462,33,0
2    29052256    rs12998251    T    C    188.08    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.61;MQ0=0;MQRankSum=-1.256;QD=12.54;ReadPosRankSum=1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPDYA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334056    GT:AD:DP:GQ:PL    0/1:5,8:15:98.19:218,0,98
2    29083850    rs13025081    C    A    30.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.09;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT61B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306108    GT:AD:DP:GQ:PL    0/1:3,3:6:60.51:61,0,106
2    29087799    rs13030945    C    A    54.32    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=6.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT61B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306108    GT:AD:DP:GQ:PL    0/1:5,3:8:84.31:84,0,183
2    29129300    rs113220687    AT    A    47.72    QDFilter2    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.941;DB;DP=31;FS=0.0;HRun=16;HaplotypeScore=210.3571;IndelType=D;MQ=58.86;MQ0=0;MQRankSum=-0.161;QD=1.54;ReadPosRankSum=0.665;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434238    GT:AD:DP:GQ:PL    0/1:21,9:31:86.75:87,0,264
2    29129316    rs185574892    T    A    158.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.399;DB;DP=35;Dels=0.0;FS=4.322;HRun=2;HaplotypeScore=1.5781;MQ=58.99;MQ0=0;MQRankSum=-0.627;QD=4.52;ReadPosRankSum=1.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434238    GT:AD:DP:GQ:PL    0/1:21,14:35:99:188,0,331
2    29135468    rs6715296    C    G    1235.61    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=4.475;DB;DP=127;Dels=0.0;FS=3.284;HRun=2;HaplotypeScore=2.4239;MQ=59.64;MQ0=0;MQRankSum=-0.032;QD=9.73;ReadPosRankSum=1.161;SNPEFF_AMINO_ACID_CHANGE=G166;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29135456_29135576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407426    GT:AD:DP:GQ:PL    0/1:78,49:127:99:1266,0,2268
2    29137278    rs12714250    G    C    143.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=17.95;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440983    GT:AD:DP:GQ:PL    0/1:3,5:8:99:174,0,102
2    29145725    rs9653591    G    T    343.98    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.9;MQ0=0;MQRankSum=0.9;QD=11.86;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296126    GT:AD:DP:GQ:PL    0/1:16,13:29:99:374,0,443
2    29152456    rs1140697    A    G    1678.97    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.706;DB;DP=104;Dels=0.0;FS=3.922;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.311;QD=16.14;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=E439;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29152445_29152576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407426    GT:AD:DP:GQ:PL    0/1:43,61:104:99:1709,0,1299
2    29161010    rs4233731    G    A    215.24    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.739;QD=15.37;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466067    GT:AD:DP:GQ:PL    0/1:6,8:14:99:245,0,201
2    29169194    rs6745598    A    G    112.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.74;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407426    GT:AD:DP:GQ:PL    0/1:2,4:6:15.55:142,0,16
2    29169612    rs3087649    T    C    695.06    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.563;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.178;QD=18.79;ReadPosRankSum=0.495;SNPEFF_AMINO_ACID_CHANGE=D667;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29169466_29171088;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407426    GT:AD:DP:GQ:PL    0/1:13,24:37:99:725,0,371
2    29226498    rs12613325    G    A    591.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.88;SNPEFF_AMINO_ACID_CHANGE=P260;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29226358_29226548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379558    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:625,45,0
2    29226512    rs12623297    A    G    512.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=28.45;SNPEFF_AMINO_ACID_CHANGE=Q265R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29226358_29226548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379558    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:545,42,0
2    29226559    rs12619829    C    T    536.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420297    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:570,42,0
2    29240005    rs13409097    T    C    4774.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379558    GT:AD:DP:GQ:PL    1/1:0,140:140:99:4774,379,0
2    29244889    rs62130298    A    C    434.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379558    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:468,36,0
2    29244985    rs143610008    T    G    639.33    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.868;DB;DP=45;Dels=0.0;FS=1.412;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.62;QD=14.21;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379558    GT:AD:DP:GQ:PL    0/1:17,28:45:99:669,0,532
2    29245411    rs62130299    G    A    92.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379558    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
2    29274720    rs895591    A    G    550.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.99;SNPEFF_AMINO_ACID_CHANGE=T886A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29274622_29275094;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403861    GT:AD:DP:GQ:PL    1/1:1,18:19:45.14:584,45,0
2    29355303    rs4666167    C    T    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471165    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
2    29356567    rs17749904    G    C    288.93    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.962;DB;DP=27;Dels=0.0;FS=3.867;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.308;QD=10.7;ReadPosRankSum=0.913;SNPEFF_AMINO_ACID_CHANGE=L120;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29356521_29356682;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530644    GT:AD:DP:GQ:PL    0/1:16,11:27:99:319,0,553
2    29366830    rs3213947    A    G    1175.85    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.803;DB;DP=124;Dels=0.0;FS=12.849;HRun=0;HaplotypeScore=0.9894;MQ=56.96;MQ0=0;MQRankSum=-2.223;QD=9.48;ReadPosRankSum=-1.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320081    GT:AD:DP:GQ:PL    0/1:73,51:124:99:1206,0,2197
2    29366875    rs3217572    C    CACAG    1918.46    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=3.419;DB;DP=72;FS=7.324;HRun=0;HaplotypeScore=370.6756;IndelType=I;MQ=54.65;MQ0=0;MQRankSum=-3.33;QD=26.65;ReadPosRankSum=0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320081    GT:AD:DP:GQ:PL    0/1:49,23:72:99:1957,0,2012
2    29375775    rs113615666    C    CT    125.41    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=16;FS=0.0;HRun=8;HaplotypeScore=39.3079;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=-1.369;QD=7.84;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320081    GT:AD:DP:GQ:PL    0/1:10,6:16:99:164,0,153
2    29379836    rs3112919    C    T    96.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320081    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:129,9,0
2    29383374    rs2305450    G    A    944.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320081    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:977,72,0
2    29386646    rs10200936    G    C    370.53    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.252;QD=10.01;ReadPosRankSum=0.889;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320081    GT:AD:DP:GQ:PL    0/1:24,13:37:99:401,0,853
2    29390301    rs72790253    A    G    346.99    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.124;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.43;MQ0=0;MQRankSum=0.313;QD=10.51;ReadPosRankSum=0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320081    GT:AD:DP:GQ:PL    0/1:20,13:33:99:377,0,682
2    29416025    rs10686493    C    CATTG    440.04    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=45.904;IndelType=I;MQ=61.78;MQ0=0;MQRankSum=1.635;QD=36.67;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431873    GT:AD:DP:GQ:PL    0/1:6,5:12:99:479,0,244
2    29416366    rs1881421    G    C    2664.73    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=197;Dels=0.0;FS=1.861;HRun=0;HaplotypeScore=2.5061;MQ=59.3;MQ0=0;MQRankSum=0.123;QD=13.53;ReadPosRankSum=0.495;SNPEFF_AMINO_ACID_CHANGE=D1529E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29415640_29416788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:100,97:197:99:2695,0,3141
2    29416481    rs1881420    T    C    1117.69    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.081;DB;DP=92;Dels=0.0;FS=1.798;HRun=2;HaplotypeScore=1.8218;MQ=59.25;MQ0=0;MQRankSum=-0.294;QD=12.15;ReadPosRankSum=-0.004;SNPEFF_AMINO_ACID_CHANGE=K1491R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29415640_29416788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:50,42:92:99:1148,0,1622
2    29416572    rs1670283    T    C    2156.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7987;MQ=58.15;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=I1461V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29415640_29416788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2189,166,0
2    29419591    rs1670284    G    T    797.76    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=51;Dels=0.0;FS=3.116;HRun=3;HaplotypeScore=0.7887;MQ=59.55;MQ0=0;MQRankSum=1.278;QD=15.64;ReadPosRankSum=-0.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:22,29:51:99:828,0,704
2    29420315    rs3738870    C    T    420.79    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.974;DB;DP=22;Dels=0.0;FS=4.973;HRun=0;HaplotypeScore=1.9747;MQ=60.0;MQ0=0;MQRankSum=-1.551;QD=19.13;ReadPosRankSum=-1.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:7,15:22:99:451,0,236
2    29429888    rs4666178    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
2    29444076    rs1534545    G    T    40.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.34;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=F79L;SNPEFF_CODON_CHANGE=ttC/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29443736_29444103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453137    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:70,0,34
2    29444095    rs1569156    C    T    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_AMINO_ACID_CHANGE=W73*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_2_29443736_29444103;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000453137    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
2    29445157    rs76002034    G    C    128.46    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=0.466;QD=11.68;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:6,5:11:99:158,0,206
2    29445458    rs3795850    G    T    208.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=20;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=10.42;ReadPosRankSum=-0.939;SNPEFF_AMINO_ACID_CHANGE=G1125;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29445383_29445473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:10,10:20:99:238,0,303
2    29446184    rs2276550    C    G    197.68    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=19;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=10.4;ReadPosRankSum=0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:9,10:19:99:228,0,291
2    29446202    rs4622670    G    A    246.41    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=20;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=12.32;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:11,9:20:99:276,0,261
2    29451511    rs11687789    C    G    78.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
2    29455016    rs12714270    C    T    418.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:452,36,0
2    29455267    rs2256740    A    G    1301.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=G845;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29455170_29455314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1335,99,0
2    29456384    rs77684724    T    C    121.72    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.11;MQ0=0;MQRankSum=-1.397;QD=4.68;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:16,10:26:99:152,0,550
2    29456385    rs76630156    G    A    124.56    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.764;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.11;MQ0=0;MQRankSum=0.29;QD=4.79;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:16,10:26:99:155,0,552
2    29498210    rs4589708    A    G    1339.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1372,105,0
2    29519622    rs2272409    C    T    313.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,12:12:27.06:347,27,0
2    29520085    rs4666194    G    A    106.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:139,12,0
2    29541104    rs2276549    C    T    132.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=10.17;ReadPosRankSum=2.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,254
2    29543663    rs2293564    T    C    1514.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=58.2;MQ0=0;QD=29.12;SNPEFF_AMINO_ACID_CHANGE=Q500;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29543617_29543748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1547,117,0
2    29754721    rs11689790    T    C    426.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:459,33,0
2    29917660    .    G    C    410.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DP=35;Dels=0.0;FS=1.998;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.083;QD=11.72;ReadPosRankSum=0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:20,15:35:99:440,0,687
2    29917940    rs2256376    C    G    164.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=18;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.578;QD=9.14;ReadPosRankSum=-0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:9,9:18:99:194,0,281
2    29940529    rs2246745    A    T    491.79    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.988;DB;DP=40;Dels=0.0;FS=2.909;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.552;QD=12.29;ReadPosRankSum=0.411;SNPEFF_AMINO_ACID_CHANGE=P234;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_29940444_29940563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    0/1:23,17:40:99:522,0,733
2    30143499    rs4358080    G    C    169.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.25;SNPEFF_AMINO_ACID_CHANGE=L9;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_30142859_30144432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389048    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
2    30381505    rs1137288    T    C    657.21    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=41;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.196;QD=16.03;ReadPosRankSum=0.771;SNPEFF_AMINO_ACID_CHANGE=S54;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_30381485_30383399;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261353    GT:AD:DP:GQ:PL    0/1:19,22:41:99:687,0,563
2    30482099    rs906864    G    A    154.77    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.752;QD=10.32;ReadPosRankSum=-1.562;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401506    GT:AD:DP:GQ:PL    0/1:8,7:15:99:185,0,252
2    30682360    rs829574    G    A    1298.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309052    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1332,99,0
2    30682470    rs55723517    A    T    1647.82    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.002;DB;DP=151;Dels=0.0;FS=0.617;HRun=1;HaplotypeScore=2.7012;MQ=59.54;MQ0=0;MQRankSum=-0.224;QD=10.91;ReadPosRankSum=0.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379509    GT:AD:DP:GQ:PL    0/1:84,66:151:99:1678,0,2464
2    30682630    rs829573    T    A    593.83    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.346;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.431;QD=14.14;ReadPosRankSum=0.928;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309052    GT:AD:DP:GQ:PL    0/1:23,19:42:99:624,0,776
2    30748321    rs829618    A    G    462.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309052    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:495,36,0
2    30748373    rs13429099    T    G    443.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.634;QD=21.11;ReadPosRankSum=0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309052    GT:AD:DP:GQ:PL    0/1:7,14:21:99:473,0,229
2    30748733    rs766880    G    T    147.07    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=13.37;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309052    GT:AD:DP:GQ:PL    0/1:5,6:11:99:177,0,178
2    30790818    rs6759011    G    T    983.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309052    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:1016,75,0
2    30791152    rs6749074    A    G    261.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476038    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:294,24,0
2    30862842    rs150564049    AG    A    143.81    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=24.7242;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=15.98;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309052    GT:AD:DP:GQ:PL    0/1:4,5:9:99:183,0,165
2    30862980    rs12466818    C    T    907.84    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=0.763;DB;DP=101;Dels=0.0;FS=4.392;HRun=0;HaplotypeScore=2.9391;MQ=59.77;MQ0=0;MQRankSum=-0.807;QD=8.99;ReadPosRankSum=0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309052    GT:AD:DP:GQ:PL    0/1:66,34:101:99:938,0,2030
2    30863092    rs12467646    C    T    1233.16    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=5.311;DB;DP=83;Dels=0.0;FS=19.666;HRun=0;HaplotypeScore=0.5784;MQ=59.16;MQ0=0;MQRankSum=-0.093;QD=14.86;ReadPosRankSum=-0.622;SNPEFF_AMINO_ACID_CHANGE=H246;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_30862983_30867090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379509    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1263,0,1148
2    30863108    rs12471868    A    G    1194.15    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.989;DB;DP=85;Dels=0.0;FS=13.202;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=0.228;QD=14.05;ReadPosRankSum=-1.141;SNPEFF_AMINO_ACID_CHANGE=I252V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_30862983_30867090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCLAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379509    GT:AD:DP:GQ:PL    0/1:42,43:85:99:1224,0,1444
2    30955528    rs2276567    C    A    131.22    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=18.75;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295055    GT:AD:DP:GQ:PL    0/1:1,6:7:22.59:161,0,23
2    30959262    rs509380    G    T    828.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458085    GT:AD:DP:GQ:PL    1/1:0,23:23:69.18:861,69,0
2    30961400    rs35032002    AG    A    251.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=16.9127;IndelType=D;MQ=61.53;MQ0=0;QD=35.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458085    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:294,21,0
2    30966737    rs939368    G    A    563.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295055    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:597,45,0
2    30973825    rs1879283    C    A    301.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295055    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:334,24,0
2    30973913    rs62142187    A    C    827.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295055    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:860,66,0
2    30975961    rs62142192    G    T    6795.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;DB;DP=228;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.8692;MQ=59.92;MQ0=0;MQRankSum=-0.806;QD=29.81;ReadPosRankSum=-0.708;SNPEFF_AMINO_ACID_CHANGE=Q349K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_30975919_30976064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295055    GT:AD:DP:GQ:PL    1/1:2,226:228:99:6796,509,0
2    30977073    rs485100    G    A    722.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465960    GT:AD:DP:GQ:PL    1/1:0,19:19:57.16:756,57,0
2    30977354    rs482384    C    T    471.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465960    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:505,39,0
2    30985829    rs498686    C    T    33.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485248    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
2    30986989    rs579016    G    T    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485248    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    30999023    rs11318503    AT    A    369.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=9;HaplotypeScore=51.6939;IndelType=D;MQ=60.0;MQ0=0;QD=19.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295055    GT:AD:DP:GQ:PL    1/1:4,15:19:45.01:412,45,0
2    31009977    rs1915125    G    C    887.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295055    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:921,69,0
2    31010287    rs62139466    G    A    341.71    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.427;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.784;QD=17.98;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295055    GT:AD:DP:GQ:PL    0/1:8,11:19:99:372,0,284
2    31133939    rs2278079    G    C    906.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324589    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:940,69,0
2    31135184    rs2288101    G    T    1239.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_AMINO_ACID_CHANGE=Q434K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_31135089_31135208;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420311    GT:AD:DP:GQ:PL    1/1:0,42:42:93.30:1272,93,0
2    31178393    rs73923310    T    C    266.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.834;DB;DP=28;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.302;QD=9.52;ReadPosRankSum=-0.859;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461193    GT:AD:DP:GQ:PL    0/1:16,12:28:99:297,0,485
2    31178818    rs2288100    C    T    2589.03    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.752;DB;DP=196;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.88;MQ0=0;MQRankSum=-0.042;QD=13.21;ReadPosRankSum=-1.189;SNPEFF_AMINO_ACID_CHANGE=K129;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_31178778_31178843;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420311    GT:AD:DP:GQ:PL    0/1:106,90:196:99:2619,0,3273
2    31181139    rs2303325    C    T    36.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=5.2;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324589    GT:AD:DP:GQ:PL    0/1:4,3:7:66.40:66,0,146
2    31188957    rs889896    C    T    87.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490212    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    31401290    rs4952052    A    C    1425.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1458,108,0
2    31403686    .    G    T    46.77    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-1.067;QD=4.68;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    0/1:3,7:10:42.51:77,0,43
2    31409434    .    G    T    188.14    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;MQRankSum=0.927;QD=11.07;ReadPosRankSum=-1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    0/1:10,7:17:99:218,0,359
2    31410708    rs1822496    C    T    2419.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8633;MQ=59.65;MQ0=0;QD=37.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2452,184,0
2    31414807    rs1562022    C    G    250.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.8;SNPEFF_AMINO_ACID_CHANGE=L424;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_31414801_31414964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:283,21,0
2    31415826    rs6543614    A    G    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    31415831    rs6543615    A    G    61.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,3:3:9:93,9,0
2    31415967    rs7591444    T    C    772.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9789;MQ=58.99;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:805,63,0
2    31416213    rs11124248    T    C    366.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:400,30,0
2    31416305    rs11124249    C    T    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    31416309    rs11124250    A    G    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    31416317    rs12619774    C    G    96.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:128,9,0
2    31419934    rs6543617    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    31423245    rs62143037    G    C    73.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=10.49;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    0/1:3,4:7:88.85:103,0,89
2    31424885    rs11692905    C    T    319.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:352,27,0
2    31428541    rs11687767    A    G    31.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403897    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
2    31457817    rs2236170    T    C    196.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322054    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
2    31467079    rs2295471    G    A    578.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322054    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:611,45,0
2    31467351    rs2295473    T    A    658.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322054    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:691,54,0
2    31483890    rs13028669    T    C    585.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322054    GT:AD:DP:GQ:PL    1/1:0,20:20:54.13:618,54,0
2    31484334    rs654650    G    A    1580.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=59.55;MQ0=0;QD=30.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322054    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1614,126,0
2    31488965    rs619002    C    T    644.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322054    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:677,51,0
2    31489727    rs644926    T    C    30.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.45;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322054    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
2    31562412    rs207440    C    T    601.40    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.049;DB;DP=59;Dels=0.0;FS=2.583;HRun=1;HaplotypeScore=5.1856;MQ=59.61;MQ0=0;MQRankSum=0.62;QD=10.19;ReadPosRankSum=-0.715;SNPEFF_AMINO_ACID_CHANGE=E1239;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_31562355_31562543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:35,24:59:99:631,0,1008
2    31565360    rs12614330    C    T    34.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.74;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:4,2:6:64.40:64,0,144
2    31567298    rs207452    T    G    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    31567743    rs566224    T    C    77.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
2    31569471    rs7599175    A    G    548.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:582,45,0
2    31570115    rs1366812    G    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    31570376    rs1366813    T    C    1427.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1461,114,0
2    31570626    rs4952083    C    T    390.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:423,33,0
2    31570631    rs4952084    A    G    326.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:359,27,0
2    31570689    rs4952085    G    A    340.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:374,27,0
2    31571241    rs13415401    G    C    1097.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1130,84,0
2    31571786    rs1884725    A    G    1109.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_AMINO_ACID_CHANGE=F1010;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_31571765_31571846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,37:37:87.26:1142,87,0
2    31572398    rs1429374    A    G    442.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.78;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:476,36,0
2    31572482    rs11408029    T    TG    1425.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=4;HaplotypeScore=95.8879;IndelType=I;MQ=61.34;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:2,37:39:99:1468,108,0
2    31587235    rs1018505    G    A    176.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=19.65;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:3,6:9:93.36:207,0,93
2    31588288    rs2365842    T    A    651.49    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DB;DP=53;Dels=0.0;FS=3.031;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.324;QD=12.29;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:31,22:53:99:681,0,968
2    31588561    rs1429376    A    C    173.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=15;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=11.58;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:9,6:15:99:204,0,321
2    31589847    rs2295475    G    A    1059.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=77;Dels=0.0;FS=17.672;HRun=1;HaplotypeScore=1.445;MQ=59.7;MQ0=0;MQRankSum=1.645;QD=13.76;ReadPosRankSum=-1.792;SNPEFF_AMINO_ACID_CHANGE=I737;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_31589736_31589860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:44,33:77:99:1089,0,1269
2    31590785    rs761926    C    G    1987.12    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=108;Dels=0.0;FS=0.927;HRun=0;HaplotypeScore=1.5592;MQ=59.79;MQ0=0;MQRankSum=0.542;QD=18.4;ReadPosRankSum=-0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:45,63:108:99:2017,0,1511
2    31598485    rs2070294    T    C    83.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.29;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:5,4:9:99:114,0,179
2    31600146    rs10187719    T    C    363.56    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.937;DB;DP=38;Dels=0.0;FS=1.994;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=9.57;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:22,16:38:99:394,0,713
2    31609448    rs477626    A    C    1053.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1086,81,0
2    31611029    rs2073316    G    A    258.80    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=18.49;ReadPosRankSum=-1.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:6,8:14:99:289,0,171
2    31628705    rs1366814    T    G    670.45    PASS    AB=0.276;AC=1;AF=0.50;AN=2;BaseQRankSum=0.561;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.22;QD=23.12;ReadPosRankSum=0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379416    GT:AD:DP:GQ:PL    0/1:8,21:29:99:700,0,234
2    31805619    rs619857    T    C    415.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=34.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SRD5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233139    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:449,33,0
2    31805675    rs522638    A    G    605.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SRD5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233139    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:639,51,0
2    31805706    rs523349    G    C    564.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SRD5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233139    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:597,48,0
2    31805880    rs77598987    A    AG    987.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=2;HaplotypeScore=84.6033;IndelType=I;MQ=58.2;MQ0=0;QD=38.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SRD5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233139    GT:AD:DP:GQ:PL    1/1:1,25:26:72.24:1030,72,0
2    31806031    rs632148    C    G    233.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SRD5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405650    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:266,21,0
2    31959689    rs6543638    A    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    32168123    rs41280625    C    T    32.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.1;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DPY30;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:63,6,0
2    32289031    rs121908515    C    T    266.93    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.463;DB;DP=24;Dels=0.0;FS=10.837;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.406;QD=11.12;ReadPosRankSum=0.927;SNPEFF_AMINO_ACID_CHANGE=S44L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_32288776_32289315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315285    GT:AD:DP:GQ:PL    0/1:13,11:24:99:297,0,446
2    32369901    rs2365556    T    C    86.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315285    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    32418808    rs212751    T    A    198.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457724    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:231,18,0
2    32432197    rs10172468    A    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282587    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    32434701    rs212685    A    G    884.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282587    GT:AD:DP:GQ:PL    1/1:0,28:28:75.21:918,75,0
2    32434869    rs212686    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282587    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    32449871    rs3832075    AT    A    122.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=8;HaplotypeScore=306.9019;IndelType=D;MQ=47.12;MQ0=0;QD=4.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282587    GT:AD:DP:GQ:PL    1/1:6,19:26:51.50:165,51,0
2    32460348    rs212714    A    G    529.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342905    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:562,48,0
2    32461493    rs55638726    T    TC    438.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=18.1168;IndelType=I;MQ=57.66;MQ0=0;QD=43.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342905    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:480,30,0
2    32466029    rs212721    A    G    315.73    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.837;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.403;QD=13.73;ReadPosRankSum=0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342905    GT:AD:DP:GQ:PL    0/1:13,10:23:99:346,0,460
2    32475109    rs455060    G    A    1815.37    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.015;DB;DP=112;Dels=0.0;FS=0.723;HRun=0;HaplotypeScore=1.8664;MQ=59.21;MQ0=0;MQRankSum=1.313;QD=16.21;ReadPosRankSum=0.216;SNPEFF_AMINO_ACID_CHANGE=A608;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_32474676_32476670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360906    GT:AD:DP:GQ:PL    0/1:50,62:112:99:1845,0,1425
2    32476390    rs408813    T    G    575.66    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=59;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.56;QD=9.76;ReadPosRankSum=-0.483;SNPEFF_AMINO_ACID_CHANGE=R181;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_32474676_32476670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360906    GT:AD:DP:GQ:PL    0/1:39,20:59:99:606,0,1144
2    32481793    rs142284456    AT    A    468.94    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=4.96;DB;DP=36;FS=1.5;HRun=3;HaplotypeScore=160.7131;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=0.413;QD=13.03;ReadPosRankSum=0.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342905    GT:AD:DP:GQ:PL    0/1:19,17:36:99:508,0,626
2    32602450    rs1991626    G    A    132.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
2    32620888    rs10172510    G    A    128.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    32661046    rs182470844    G    C    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
2    32666411    rs41291167    T    C    400.34    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.356;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.108;QD=10.82;ReadPosRankSum=-1.129;SNPEFF_AMINO_ACID_CHANGE=N1275;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_32666397_32666530;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    0/1:22,15:37:99:430,0,736
2    32667058    rs55734616    C    A    1709.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=58.48;MQ0=0;QD=37.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444173    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1742,132,0
2    32667061    rs60955793    T    A    1650.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;QD=36.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444173    GT:AD:DP:GQ:PL    1/1:1,44:45:99:1683,129,0
2    32667182    rs60197615    G    C    2817.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=V1332L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_32667133_32667294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2851,208,0
2    32696502    rs4952214    T    G    82.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=27.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    32706579    rs9646977    T    A    1551.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1585,123,0
2    32712875    rs2366891    A    C    2983.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;QD=36.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,81:81:99:3017,226,0
2    32713045    rs4524166    A    C    80.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
2    32733341    .    TCC    T    88.19    QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=4.373;DP=79;FS=19.784;HRun=2;HaplotypeScore=736.9973;IndelType=D;MQ=41.95;MQ0=0;MQRankSum=-2.22;QD=1.12;ReadPosRankSum=-1.305;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497023    GT:AD:DP:GQ:PL    0/1:61,18:79:99:127,0,1124
2    32749880    rs2710609    C    T    484.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:518,42,0
2    32749890    rs2710610    C    T    174.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.32;MQ0=0;QD=10.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,16:17:23.96:208,24,0
2    32749893    rs2710611    A    T    210.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=11.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,18:18:26.96:243,27,0
2    32749903    rs2710612    T    C    714.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,23:23:60.16:748,60,0
2    32757201    rs138437601    C    CGTGTGTGTGTGT    969.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=376.7025;IndelType=I;MQ=50.32;MQ0=1;QD=23.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:35,4:41:36.54:1012,37,0
2    32768140    rs2710631    A    T    287.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:321,24,0
2    32836362    rs13035097    A    G    182.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.2;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421745    GT:AD:DP:GQ:PL    0/1:6,6:12:99:212,0,189
2    32855615    rs2710623    A    G    2245.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=L38;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_32855590_32855767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317907    GT:AD:DP:GQ:PL    1/1:0,64:66:99:2279,169,0
2    32959024    rs1551177    T    C    500.73    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=30;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.711;QD=16.69;ReadPosRankSum=1.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454690    GT:AD:DP:GQ:PL    0/1:13,17:30:99:531,0,347
2    32961745    rs10200333    T    A    1205.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=28.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454690    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1238,99,0
2    32983299    rs71407470    TA    T    277.14    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=3.399;DB;DP=27;FS=0.0;HRun=11;HaplotypeScore=86.5761;IndelType=D;MQ=59.14;MQ0=0;MQRankSum=-0.501;QD=10.26;ReadPosRankSum=1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317907    GT:AD:DP:GQ:PL    0/1:11,16:27:99:316,0,241
2    33036324    rs3731578    G    A    34.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.74;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317907    GT:AD:DP:GQ:PL    0/1:4,2:6:64.41:64,0,129
2    33045732    rs6543677    T    C    173.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317907    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
2    33335508    rs11124306    C    G    311.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:345,27,0
2    33335818    rs17012574    C    T    864.30    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=4.316;DB;DP=53;Dels=0.0;FS=13.966;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.31;ReadPosRankSum=0.063;SNPEFF_AMINO_ACID_CHANGE=L345;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_33335649_33335818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    0/1:23,30:53:99:894,0,666
2    33335847    rs218226    C    T    467.41    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=41;Dels=0.0;FS=3.249;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.2;QD=11.4;ReadPosRankSum=-0.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    0/1:25,16:41:99:497,0,795
2    33359457    rs12620839    C    T    589.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    1/1:0,17:17:48.10:623,48,0
2    33360126    rs1545550    A    G    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
2    33412077    rs1065324    G    A    682.52    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=40;Dels=0.0;FS=5.155;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.029;QD=17.06;ReadPosRankSum=0.675;SNPEFF_AMINO_ACID_CHANGE=A126;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_33411923_33412147;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390003    GT:AD:DP:GQ:PL    0/1:18,22:40:99:713,0,472
2    33412342    rs6707911    G    A    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
2    33413640    rs6712473    G    T    552.77    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.792;DB;DP=58;Dels=0.0;FS=5.43;HRun=2;HaplotypeScore=2.7759;MQ=57.57;MQ0=0;MQRankSum=1.239;QD=9.53;ReadPosRankSum=-2.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    0/1:34,24:58:99:583,0,1103
2    33413949    rs4542826    G    A    857.28    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.107;DB;DP=66;Dels=0.0;FS=2.834;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.927;QD=12.99;ReadPosRankSum=-2.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432635    GT:AD:DP:GQ:PL    0/1:35,31:66:99:887,0,1123
2    33414009    rs3922572    T    A    694.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432635    GT:AD:DP:GQ:PL    1/1:0,29:29:69.16:728,69,0
2    33442549    rs2290449    G    A    262.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.265;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.06;QD=14.56;ReadPosRankSum=0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    0/1:9,9:18:99:292,0,311
2    33447023    rs7608535    G    A    70.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.12;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354476    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,135
2    33447202    rs2290448    C    T    433.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.583;DB;DP=35;Dels=0.0;FS=5.138;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=12.37;ReadPosRankSum=-0.183;SNPEFF_AMINO_ACID_CHANGE=N294;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_33447147_33447218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390003    GT:AD:DP:GQ:PL    0/1:20,15:35:99:463,0,605
2    33500734    rs1814548    A    G    109.71    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.67;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413303    GT:AD:DP:GQ:PL    0/1:3,4:7:54.73:140,0,55
2    33525382    rs935996    A    C    100.35    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=11.15;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    0/1:5,4:9:99:130,0,181
2    33526382    rs6735659    T    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    0/1:2,2:4:67.99:72,0,68
2    33540138    rs2276591    G    A    123    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=8.2;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    0/1:10,5:15:99:153,0,369
2    33540172    rs111618527    A    AT    381.30    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=2.16;DB;DP=29;FS=4.821;HRun=7;HaplotypeScore=104.1076;IndelType=I;MQ=59.2;MQ0=0;MQRankSum=-0.327;QD=13.15;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    0/1:15,14:29:99:420,0,347
2    33540248    rs1058840    G    A    579.92    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.44;MQ0=0;MQRankSum=-0.793;QD=13.81;ReadPosRankSum=0.711;SNPEFF_AMINO_ACID_CHANGE=P1214;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_33540211_33540336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404816    GT:AD:DP:GQ:PL    0/1:19,23:42:99:610,0,534
2    33568191    rs5024712    T    C    93.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=15.64;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    0/1:2,4:6:66.41:124,0,66
2    33572555    rs6706620    G    A    2148.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=Q1000;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_33572434_33572577;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407925    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2182,162,0
2    33585796    rs4422143    T    C    1564.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.46;MQ0=0;QD=30.67;SNPEFF_AMINO_ACID_CHANGE=V1010A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_33585664_33585846;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418533    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1597,132,0
2    33586464    rs66629347    C    CT    134.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=120.9432;IndelType=I;MQ=58.46;MQ0=0;MQRankSum=0.747;QD=8.43;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    1/1:7,8:16:17.17:177,17,0
2    33614554    rs6749614    G    A    118.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.83;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    0/1:2,4:6:27.60:149,0,28
2    33622448    rs2367734    T    C    433.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:467,36,0
2    33622475    rs12053346    T    C    181.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:214,18,0
2    33623306    rs2034693    C    T    52.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6649;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=5.85;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    0/1:6,3:9:82.64:83,0,228
2    33623387    rs624060    A    G    1001.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=25.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1034,105,0
2    33623388    .    T    C    1012.89    PASS    AC=2;AF=1.00;AN=2;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=25.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1046,105,0
2    33623720    rs8970    A    G    79.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:110,0,30
2    33623734    rs622716    A    G    46.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.12;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272273    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
2    33741470    rs4233918    T    C    187.82    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.932;QD=17.07;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497723    GT:AD:DP:GQ:PL    0/1:5,6:11:99:218,0,156
2    33744958    rs7597095    C    T    1277.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.641;QD=33.61;ReadPosRankSum=-0.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425210    GT:AD:DP:GQ:PL    1/1:1,37:38:66.74:1310,67,0
2    33745208    rs2305576    T    C    267.29    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.451;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=58.2;MQ0=0;MQRankSum=-0.254;QD=20.56;ReadPosRankSum=-0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425210    GT:AD:DP:GQ:PL    0/1:3,10:13:80.33:297,0,80
2    33745336    rs2305575    T    C    38.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.76;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425210    GT:AD:DP:GQ:PL    0/1:2,3:5:68.77:69,0,72
2    33746806    rs7565568    T    A    155.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423159    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:189,15,0
2    33747285    rs2305573    G    A    1846.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=59.61;MQ0=0;QD=38.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423159    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1880,144,0
2    33748913    rs6735997    A    G    1453.89    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.023;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.49;MQ0=0;MQRankSum=-0.209;QD=16.15;ReadPosRankSum=0.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423159    GT:AD:DP:GQ:PL    0/1:44,45:90:99:1484,0,1490
2    33752152    rs10189430    G    T    504.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=38;Dels=0.0;FS=7.454;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.489;QD=13.29;ReadPosRankSum=0.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437184    GT:AD:DP:GQ:PL    0/1:19,19:38:99:535,0,616
2    33759395    rs35933402    C    T    780.11    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=49;Dels=0.0;FS=2.738;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.569;QD=15.92;ReadPosRankSum=0.486;SNPEFF_AMINO_ACID_CHANGE=S363;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_33759390_33759467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402538    GT:AD:DP:GQ:PL    0/1:22,26:49:99:810,0,703
2    33759563    rs74326828    G    A    405.14    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.598;QD=17.61;ReadPosRankSum=0.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477927    GT:AD:DP:GQ:PL    0/1:9,14:23:99:435,0,316
2    33764141    .    G    GT    338.50    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.039;DP=34;FS=3.135;HRun=10;HaplotypeScore=124.3045;IndelType=I;MQ=58.07;MQ0=0;MQRankSum=1.02;QD=9.96;ReadPosRankSum=-2.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402538    GT:AD:DP:GQ:PL    0/1:18,16:34:99:378,0,323
2    33784696    rs17598067    G    A    672.56    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.039;QD=11.4;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402538    GT:AD:DP:GQ:PL    0/1:33,26:59:99:703,0,999
2    33787976    rs10572554    CCTAA    C    245.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=43.2501;IndelType=D;MQ=48.82;MQ0=0;QD=30.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402538    GT:AD:DP:GQ:PL    1/1:2,6:8:18.05:288,18,0
2    33811516    rs935625    C    G    682.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM98A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498340    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:715,60,0
2    33952022    rs4670913    C    A    238.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYADML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491596    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:272,21,0
2    33952055    rs2290101    C    G    413.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MYADML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491596    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:446,36,0
2    33952413    rs4477896    T    C    1023.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC009499.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366209    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1057,78,0
2    33952456    rs2367810    C    G    970.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=26.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC009499.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366209    GT:AD:DP:GQ:PL    1/1:0,36:36:75.24:1004,75,0
2    33952621    rs11684598    G    A    238.73    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=15;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.872;QD=15.92;ReadPosRankSum=0.993;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC009499.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366209    GT:AD:DP:GQ:PL    0/1:7,8:15:99:269,0,173
2    36605304    rs4670546    G    A    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.98;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,108
2    36605417    rs4670547    A    G    758.41    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=3.155;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=15.48;ReadPosRankSum=-0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:23,26:49:99:788,0,725
2    36605585    rs4670548    A    G    1742.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1776,132,0
2    36605676    rs111480313    A    AT    118.51    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=13;FS=0.0;HRun=10;HaplotypeScore=35.8018;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=-0.466;QD=9.12;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:7,6:13:89.90:158,0,90
2    36668219    rs2049367    C    A    110.24    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.75;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:3,4:7:95.24:140,0,95
2    36668395    rs2276673    T    A    1108.09    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.407;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.576;QD=16.06;ReadPosRankSum=-2.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:28,41:69:99:1138,0,775
2    36669645    rs17018798    T    C    458.83    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.37;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=58.05;MQ0=0;MQRankSum=1.039;QD=19.12;ReadPosRankSum=-0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:9,15:24:99:489,0,247
2    36669670    rs3821157    C    A    529.49    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.482;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.917;QD=17.08;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:15,16:31:99:559,0,435
2    36670011    rs3732073    T    C    281.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.485;QD=20.12;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:4,10:14:78.60:312,0,79
2    36691951    rs711252    A    C    202.96    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.059;QD=12.68;ReadPosRankSum=0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426856    GT:AD:DP:GQ:PL    0/1:7,9:16:99:233,0,247
2    36704144    rs848547    C    T    705.51    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=4.837;DB;DP=53;Dels=0.0;FS=1.323;HRun=0;HaplotypeScore=2.6208;MQ=58.85;MQ0=0;MQRankSum=-0.668;QD=13.31;ReadPosRankSum=-2.361;SNPEFF_AMINO_ACID_CHANGE=T368;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_36704032_36704214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:28,25:53:99:736,0,830
2    36706511    rs711250    G    C    103.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.76;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:3,4:7:82.85:133,0,83
2    36739553    rs848526    T    C    680.13    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.23;DB;DP=62;Dels=0.0;FS=5.85;HRun=0;HaplotypeScore=4.5582;MQ=60.0;MQ0=0;MQRankSum=-0.319;QD=10.97;ReadPosRankSum=-1.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:32,30:62:99:710,0,967
2    36756288    rs711247    T    C    539.54    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.085;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.46;MQ0=0;MQRankSum=-0.092;QD=12.55;ReadPosRankSum=0.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007401.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406220    GT:AD:DP:GQ:PL    0/1:21,22:43:99:570,0,556
2    36779144    rs10180760    T    G    554.04    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=33;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8941;MQ=59.3;MQ0=0;MQRankSum=0.203;QD=16.79;ReadPosRankSum=1.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:13,20:33:99:584,0,316
2    36782656    rs10178965    G    A    1328.97    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.701;DB;DP=107;Dels=0.0;FS=2.758;HRun=1;HaplotypeScore=0.5784;MQ=59.61;MQ0=0;MQRankSum=0.479;QD=12.42;ReadPosRankSum=-0.003;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:59,48:107:99:1359,0,1840
2    36783111    rs184531471    C    A    520.95    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5782;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=14.88;ReadPosRankSum=-0.612;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:14,20:35:99:551,0,389
2    36783127    rs10194100    T    C    571.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.734;DB;DP=35;Dels=0.0;FS=1.456;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.936;QD=16.32;ReadPosRankSum=0.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:15,20:35:99:601,0,461
2    36783215    rs10181664    C    T    277    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DB;DP=20;Dels=0.0;FS=6.767;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.531;QD=13.85;ReadPosRankSum=-0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280527    GT:AD:DP:GQ:PL    0/1:10,10:20:99:307,0,289
2    36805676    rs2075226    A    G    1594.01    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.079;DB;DP=114;Dels=0.0;FS=0.898;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=1.596;QD=13.98;ReadPosRankSum=1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FEZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305852    GT:AD:DP:GQ:PL    0/1:56,58:114:99:1624,0,1784
2    36806021    rs2072534    G    A    1242.24    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.573;DB;DP=95;Dels=0.0;FS=0.86;HRun=4;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.716;QD=13.08;ReadPosRankSum=2.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FEZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305852    GT:AD:DP:GQ:PL    0/1:50,45:95:99:1272,0,1549
2    36806051    rs2072533    A    G    1026.37    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.232;DB;DP=77;Dels=0.0;FS=2.401;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.44;QD=13.33;ReadPosRankSum=-1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FEZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305852    GT:AD:DP:GQ:PL    0/1:39,38:77:99:1056,0,1262
2    36808350    rs848638    C    T    1726.53    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.821;DB;DP=95;Dels=0.0;FS=8.778;HRun=1;HaplotypeScore=1.7883;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=18.17;ReadPosRankSum=0.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FEZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305852    GT:AD:DP:GQ:PL    0/1:42,53:95:99:1757,0,1442
2    36808732    rs848637    T    G    67.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.47;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FEZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357996    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:97,0,67
2    36810473    rs11691767    G    T    1523.63    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=6.977;DB;DP=108;Dels=0.0;FS=16.545;HRun=2;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.212;QD=14.11;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FEZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305852    GT:AD:DP:GQ:PL    0/1:50,58:108:99:1554,0,1418
2    36810586    rs14291    T    C    1571.50    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.74;DB;DP=131;Dels=0.0;FS=6.71;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.007;QD=12.0;ReadPosRankSum=1.516;SNPEFF_AMINO_ACID_CHANGE=T134;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_36810496_36810612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FEZ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379245    GT:AD:DP:GQ:PL    0/1:75,56:131:99:1601,0,2216
2    36810769    rs848619    T    C    99.99    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.392;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=7.69;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FEZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305852    GT:AD:DP:GQ:PL    0/1:9,4:13:99:130,0,327
2    36943338    rs4670597    C    G    113.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379241    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:146,12,0
2    36943419    rs4670598    T    C    681.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379241    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:715,54,0
2    36986549    rs10179289    A    G    33.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379241    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
2    37000797    rs3770784    C    G    34.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379241    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
2    37000877    rs116154541    A    T    254.23    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.914;DB;DP=17;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.876;QD=14.95;ReadPosRankSum=0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379241    GT:AD:DP:GQ:PL    0/1:8,9:17:99:284,0,235
2    37010574    rs3821147    G    A    269.88    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.232;DB;DP=27;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=0.8321;MQ=58.27;MQ0=0;MQRankSum=-0.116;QD=10.0;ReadPosRankSum=1.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379241    GT:AD:DP:GQ:PL    0/1:16,11:27:99:300,0,380
2    37032529    rs75212718    G    C    254.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-2.657;QD=15.88;ReadPosRankSum=-1.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379241    GT:AD:DP:GQ:PL    0/1:6,10:16:99:284,0,189
2    37077015    rs723674    C    A    398.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263918    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:432,33,0
2    37078095    rs113273997    A    AT    406.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.574;DB;DP=27;FS=10.792;HRun=12;HaplotypeScore=143.7858;IndelType=I;MQ=52.26;MQ0=0;MQRankSum=-0.052;QD=14.52;ReadPosRankSum=0.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263918    GT:AD:DP:GQ:PL    1/1:5,12:27:26.66:449,27,0
2    37082695    rs998321    C    T    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263918    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    37088083    rs2540935    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263918    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
2    37094945    rs2540923    A    G    2168.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495595    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2202,172,0
2    37095139    rs6752845    G    C    360.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.32;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=17.16;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495595    GT:AD:DP:GQ:PL    0/1:9,12:21:99:390,0,311
2    37096970    rs2160379    C    T    449.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263918    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:483,36,0
2    37097009    rs2110942    T    C    72.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263918    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
2    37111045    rs2691106    T    A    485.90    PASS    AB=0.24;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.233;DB;DP=25;Dels=0.0;FS=5.527;HRun=0;HaplotypeScore=1.9787;MQ=60.0;MQ0=0;MQRankSum=1.167;QD=19.44;ReadPosRankSum=-0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263918    GT:AD:DP:GQ:PL    0/1:6,19:25:99:516,0,188
2    37129618    .    A    ATAAT    2006.45    PASS    AC=2;AF=1.00;AN=2;DP=28;FS=0.0;HRun=0;HaplotypeScore=97.077;IndelType=I;MQ=50.05;MQ0=0;QD=71.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263918    GT:AD:DP:GQ:PL    1/1:3,24:28:78.27:2048,78,0
2    37215607    rs9636429    G    A    46.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.74;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:77,0,33
2    37217622    rs3796041    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    37234478    rs144903928    TAC    T    102.81    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=2.338;DB;DP=33;FS=3.183;HRun=0;HaplotypeScore=291.2944;IndelType=D;MQ=42.94;MQ0=0;MQRankSum=-2.511;QD=3.12;ReadPosRankSum=-1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471051    GT:AD:DP:GQ:PL    0/1:23,6:33:99:142,0,426
2    37234519    rs2013223    T    C    147.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=45.47;MQ0=0;MQRankSum=1.377;QD=8.17;ReadPosRankSum=-0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471051    GT:AD:DP:GQ:PL    0/1:10,8:18:99:177,0,132
2    37241050    rs17020125    G    A    815.96    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.822;DB;DP=67;Dels=0.0;FS=2.144;HRun=0;HaplotypeScore=3.3462;MQ=59.66;MQ0=0;MQRankSum=-1.135;QD=12.18;ReadPosRankSum=-0.222;SNPEFF_AMINO_ACID_CHANGE=S1406;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37240984_37241163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    0/1:40,27:67:99:846,0,1293
2    37248015    rs17020136    T    C    312    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.725;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=14.86;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    0/1:10,11:21:99:342,0,323
2    37255015    rs2540998    G    A    497.37    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=15.07;ReadPosRankSum=1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    0/1:16,17:33:99:527,0,552
2    37259640    rs9309001    G    T    249.31    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.467;QD=17.81;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    0/1:5,9:14:99:279,0,155
2    37264935    rs4670650    A    T    85.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=5.68;ReadPosRankSum=-0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467978    GT:AD:DP:GQ:PL    0/1:9,6:15:99:115,0,336
2    37292890    rs11903252    T    G    313.18    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.661;QD=12.05;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    0/1:15,11:26:99:343,0,501
2    37297329    rs4327218    C    G    326.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.643;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.67;MQ0=0;MQRankSum=-0.084;QD=9.33;ReadPosRankSum=-1.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478810    GT:AD:DP:GQ:PL    0/1:21,14:35:99:356,0,689
2    37302556    rs66519518    GA    G    1880.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;FS=0.0;HRun=9;HaplotypeScore=209.8697;IndelType=D;MQ=60.25;MQ0=0;QD=24.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    1/1:5,71:76:99:1922,210,0
2    37304369    rs17445820    T    C    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
2    37306343    rs6743906    G    A    610.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=F86;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37306263_37306474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233099    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:643,48,0
2    37317869    rs4670654    C    T    1424.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281932    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1458,105,0
2    37318041    rs4670655    A    G    81.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281932    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
2    37319211    rs55823009    A    G    1044.03    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=100;Dels=0.0;FS=1.695;HRun=0;HaplotypeScore=1.933;MQ=60.0;MQ0=0;MQRankSum=-0.524;QD=10.44;ReadPosRankSum=-0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281932    GT:AD:DP:GQ:PL    0/1:59,41:100:99:1074,0,1890
2    37322913    rs10153588    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473067    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    37373982    rs2307475    A    AT    2921.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.0;HRun=0;HaplotypeScore=131.514;IndelType=I;MQ=61.09;MQ0=0;QD=42.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233057    GT:AD:DP:GQ:PL    1/1:2,66:68:99:2963,199,0
2    37402270    rs11569755    C    G    200.21    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.267;DB;DP=21;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.688;QD=9.53;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:13,8:21:99:230,0,390
2    37402373    rs11569758    A    G    162.73    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.713;DB;DP=21;Dels=0.0;FS=2.539;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=7.75;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:13,7:21:99:193,0,434
2    37406419    rs10205526    C    T    115.26    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.05;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:145,0,28
2    37406644    rs10182091    A    G    884.99    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=68;Dels=0.0;FS=0.929;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.148;QD=13.01;ReadPosRankSum=-0.316;SNPEFF_AMINO_ACID_CHANGE=Y124;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37406601_37406727;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:37,31:68:99:915,0,1109
2    37406680    rs10205833    C    G    571.47    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.455;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=10.58;ReadPosRankSum=0.16;SNPEFF_AMINO_ACID_CHANGE=L112F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37406601_37406727;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:33,21:54:99:601,0,1052
2    37406761    rs4459710    T    C    656.46    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.873;DB;DP=39;Dels=0.0;FS=3.089;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.578;QD=16.83;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:18,21:39:99:686,0,472
2    37406807    rs2111630    A    G    159.32    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.658;QD=8.39;ReadPosRankSum=1.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:13,6:19:99:189,0,447
2    37410357    rs6544060    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:72,0,70
2    37410537    rs6544061    C    T    455.02    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.126;DB;DP=46;Dels=0.0;FS=1.212;HRun=3;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-1.115;QD=9.68;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260637    GT:AD:DP:GQ:PL    0/1:26,20:46:99:485,0,827
2    37414431    rs6724820    A    C    371.77    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.905;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=17.7;ReadPosRankSum=-1.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416345    GT:AD:DP:GQ:PL    0/1:8,13:21:99:402,0,270
2    37415496    rs11124566    G    C    668.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416345    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:701,51,0
2    37428743    rs2540973    C    T    588.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=34.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEBPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234170    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:622,48,0
2    37438993    rs1137437    G    A    386.44    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=4.363;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=13.33;ReadPosRankSum=0.504;SNPEFF_AMINO_ACID_CHANGE=S931;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37438986_37439182;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEBPZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234170    GT:AD:DP:GQ:PL    0/1:16,13:29:99:416,0,461
2    37447627    rs67198339    C    CA    253.20    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.755;DB;DP=20;FS=1.952;HRun=8;HaplotypeScore=49.4907;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=0.311;QD=12.66;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEBPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234170    GT:AD:DP:GQ:PL    0/1:10,10:20:99:292,0,166
2    37456032    rs2098386    C    T    1778.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=39.51;SNPEFF_AMINO_ACID_CHANGE=V102I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37454687_37456179;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEBPZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234170    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1811,135,0
2    37458711    rs3213745    G    A    644.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=46;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.0;MQ=57.12;MQ0=0;MQRankSum=1.626;QD=14.01;ReadPosRankSum=0.483;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000002125    GT:AD:DP:GQ:PL    0/1:23,23:46:99:674,0,698
2    37480249    rs1056021    A    G    537.09    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.262;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.69;MQ0=0;MQRankSum=-0.72;QD=16.78;ReadPosRankSum=-1.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000002125    GT:AD:DP:GQ:PL    0/1:12,20:32:99:567,0,411
2    37487723    rs10176949    G    A    41.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234179    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
2    37494591    rs2302650    A    G    946.65    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.922;DB;DP=82;Dels=0.0;FS=4.871;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.93;QD=11.54;ReadPosRankSum=-1.664;SNPEFF_AMINO_ACID_CHANGE=N157;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37494573_37494679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443977    GT:AD:DP:GQ:PL    0/1:46,36:82:99:977,0,1336
2    37499406    rs2160394    C    T    336.98    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.926;QD=21.06;ReadPosRankSum=-2.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234179    GT:AD:DP:GQ:PL    0/1:5,11:16:99:367,0,166
2    37505108    rs116096831    C    T    749.41    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.3;DB;DP=55;Dels=0.0;FS=2.462;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.484;QD=13.63;ReadPosRankSum=1.078;SNPEFF_AMINO_ACID_CHANGE=P399;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37505009_37505132;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234179    GT:AD:DP:GQ:PL    0/1:31,24:55:99:779,0,863
2    37518045    rs10177176    G    C    720.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.076;DB;DP=50;Dels=0.0;FS=2.838;HRun=0;HaplotypeScore=0.9665;MQ=59.54;MQ0=0;MQRankSum=-1.436;QD=14.4;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=L175;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_37518011_37518142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234179    GT:AD:DP:GQ:PL    0/1:25,25:50:99:750,0,834
2    37543371    rs6544066    A    G    841.09    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=50;Dels=0.0;FS=1.303;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.934;QD=16.82;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477132    GT:AD:DP:GQ:PL    0/1:19,31:50:99:871,0,594
2    37595604    rs3770747    C    T    47.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=11.99;ReadPosRankSum=0.727;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_37595424_37595802;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPCT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444022    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:78,0,33
2    37595696    rs1468816    A    C    406.61    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.601;DB;DP=29;Dels=0.0;FS=2.341;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.504;QD=14.02;ReadPosRankSum=-0.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338415    GT:AD:DP:GQ:PL    0/1:13,16:29:99:437,0,410
2    38178362    rs2197561    T    C    2522.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.72;MQ0=0;QD=30.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM82A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234195    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2556,193,0
2    38179134    rs4670800    G    A    3144.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=36.57;SNPEFF_AMINO_ACID_CHANGE=G259D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_38178376_38179344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM82A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234195    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3178,238,0
2    38179373    rs77173073    A    G    403.88    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=39;Dels=0.0;FS=1.594;HRun=3;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.0;QD=10.36;ReadPosRankSum=-0.526;SNPEFF_AMINO_ACID_CHANGE=R339G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_38178376_38180253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM82A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402091    GT:AD:DP:GQ:PL    0/1:19,20:39:99:434,0,625
2    38202502    rs2044447    A    G    439.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM82A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414644    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:473,36,0
2    38218281    rs17021813    T    C    258.89    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.837;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=13.63;ReadPosRankSum=-0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM82A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496735    GT:AD:DP:GQ:PL    0/1:10,9:19:99:289,0,362
2    38244818    rs11901988    A    C    1009.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM82A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354545    GT:AD:DP:GQ:PL    1/1:0,31:31:78.26:1043,78,0
2    38244824    rs11891536    G    A    996.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM82A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354545    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1029,75,0
2    38298150    rs1056837    A    G    460.93    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.068;QD=10.02;ReadPosRankSum=-0.728;SNPEFF_AMINO_ACID_CHANGE=D449;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_38294652_38298453;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP1B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260630    GT:AD:DP:GQ:PL    0/1:29,17:46:99:491,0,942
2    38298203    rs1056836    C    G    330.17    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.997;DB;DP=34;Dels=0.0;FS=5.016;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.822;QD=9.71;ReadPosRankSum=0.297;SNPEFF_AMINO_ACID_CHANGE=V432L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_38294652_38298453;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260630    GT:AD:DP:GQ:PL    0/1:20,14:34:99:360,0,655
2    38526324    rs3816370    A    T    31.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.9665;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=3.18;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332337    GT:AD:DP:GQ:PL    0/1:6,4:10:61.79:62,0,213
2    38526547    rs3765052    G    A    355.48    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.354;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.688;QD=16.93;ReadPosRankSum=-1.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332337    GT:AD:DP:GQ:PL    0/1:8,13:21:99:385,0,275
2    38536375    rs12469251    T    A    201.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449130    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:235,18,0
2    38536626    rs2305243    T    G    2468.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=59.12;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=R140;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_38536520_38536648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449130    GT:AD:DP:GQ:PL    1/1:1,73:74:99:2502,190,0
2    38537626    rs2305245    A    C    666.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456736    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:699,51,0
2    38541581    rs71400348    C    CTAT    304.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=13.2811;IndelType=I;MQ=52.5;MQ0=0;QD=60.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451483    GT:AD:DP:GQ:PL    1/1:0,4:5:15.05:347,15,0
2    38542573    rs12712583    T    C    1014.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451483    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1048,78,0
2    38604351    rs3731847    A    G    376.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.07;SNPEFF_AMINO_ACID_CHANGE=W18R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_38604285_38604404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378954    GT:AD:DP:GQ:PL    1/1:0,15:15:33.07:409,33,0
2    38813090    rs116332894    T    C    329.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=24;Dels=0.0;FS=5.969;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.543;QD=13.74;ReadPosRankSum=0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRPLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358367    GT:AD:DP:GQ:PL    0/1:9,15:24:99:360,0,321
2    38916906    rs11687518    T    C    1231.39    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=69;Dels=0.0;FS=2.085;HRun=0;HaplotypeScore=0.734;MQ=59.67;MQ0=0;MQRankSum=0.502;QD=17.85;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272252    GT:AD:DP:GQ:PL    0/1:30,39:69:99:1261,0,905
2    38956947    rs2272445    A    G    276.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9559;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=18.44;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272252    GT:AD:DP:GQ:PL    0/1:6,9:15:99:307,0,198
2    38960491    rs3097714    A    G    336.68    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.341;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.356;QD=13.47;ReadPosRankSum=0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444351    GT:AD:DP:GQ:PL    0/1:14,11:25:99:367,0,492
2    38977371    rs3112183    C    T    365.95    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=12.62;ReadPosRankSum=0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313117    GT:AD:DP:GQ:PL    0/1:16,13:29:99:396,0,420
2    38977402    rs3134630    T    C    261.16    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=13.06;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313117    GT:AD:DP:GQ:PL    0/1:9,11:20:99:291,0,306
2    39008949    rs1056104    G    A    876.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.385;DB;DP=66;Dels=0.0;FS=3.361;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.28;ReadPosRankSum=0.423;SNPEFF_AMINO_ACID_CHANGE=G140D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_39008659_39009598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281950    GT:AD:DP:GQ:PL    0/1:33,33:66:99:906,0,1021
2    39025555    rs1530853    G    A    417.36    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.739;DB;DP=43;Dels=0.0;FS=6.369;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.013;QD=9.71;ReadPosRankSum=0.428;SNPEFF_AMINO_ACID_CHANGE=C1349;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_39024871_39025584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    0/1:29,14:43:99:447,0,862
2    39025632    rs1530852    A    G    123.05    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=1.558;QD=7.24;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    0/1:11,6:17:99:153,0,399
2    39030074    rs13029406    C    T    829.66    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.87;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.599;QD=13.38;ReadPosRankSum=0.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497514    GT:AD:DP:GQ:PL    0/1:30,32:62:99:860,0,935
2    39040845    rs7419838    G    A    135.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.58;ReadPosRankSum=1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442331    GT:AD:DP:GQ:PL    0/1:5,5:10:99:166,0,142
2    39042496    rs10865144    C    T    154.17    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=19.27;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442331    GT:AD:DP:GQ:PL    0/1:2,6:8:62.92:184,0,63
2    39042639    rs3112138    G    A    3418.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8245;MQ=59.77;MQ0=0;MQRankSum=-1.074;QD=33.52;ReadPosRankSum=-0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442331    GT:AD:DP:GQ:PL    1/1:1,101:102:99:3419,250,0
2    39045885    rs10176932    C    T    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
2    39050019    rs3112146    G    T    199.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:232,18,0
2    39050061    rs67594239    AT    A    291.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=45.9021;IndelType=D;MQ=62.36;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:333,27,0
2    39050141    rs3770681    A    C    527.98    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.562;DB;DP=37;Dels=0.0;FS=4.077;HRun=0;HaplotypeScore=0.0;MQ=60.29;MQ0=0;MQRankSum=-0.623;QD=14.27;ReadPosRankSum=1.504;SNPEFF_AMINO_ACID_CHANGE=S1095;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_39050135_39050411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    0/1:19,18:37:99:558,0,622
2    39053545    rs7589162    G    C    221.71    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=17.05;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    0/1:6,7:13:99:252,0,210
2    39054048    rs3099980    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    39065729    rs17494315    C    A    71.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.97;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355320    GT:AD:DP:GQ:PL    0/1:3,3:6:95.04:102,0,95
2    39075356    rs11124651    A    C    522.64    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=42;Dels=0.0;FS=3.636;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.036;QD=12.44;ReadPosRankSum=1.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474104    GT:AD:DP:GQ:PL    0/1:23,19:42:99:553,0,805
2    39082344    rs7598922    T    C    2041.38    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.117;DB;DP=144;DS;Dels=0.0;FS=7.027;HRun=0;HaplotypeScore=3.4078;MQ=59.36;MQ0=0;MQRankSum=0.379;QD=14.18;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=N587S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_39082199_39082394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    0/1:78,66:144:99:2071,0,2594
2    39088032    .    G    T    131.14    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=40.36;MQ0=0;MQRankSum=-2.083;QD=9.37;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417233    GT:AD:DP:GQ:PL    0/1:4,10:14:69.38:161,0,69
2    39090696    rs3099999    T    C    1495.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=38.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1529,114,0
2    39090828    rs3100000    C    G    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295373    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:74,0,26
2    39108387    rs3099947    A    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    39108773    rs3099948    A    G    842.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340556    GT:AD:DP:GQ:PL    1/1:0,23:24:63.21:875,63,0
2    39109393    rs3099949    T    G    197.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340556    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
2    39148393    rs77239738    G    A    222.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.766;QD=14.82;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398800    GT:AD:DP:GQ:PL    0/1:6,9:15:99:252,0,203
2    39162785    rs138720535    CT    C    132.66    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.356;DB;DP=20;FS=0.0;HRun=8;HaplotypeScore=47.9532;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.964;QD=6.63;ReadPosRankSum=-0.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488692    GT:AD:DP:GQ:PL    0/1:12,8:20:99:172,0,375
2    39170932    rs67493729    GT    G    129.33    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=3.873;DB;DP=22;FS=0.0;HRun=10;HaplotypeScore=50.1499;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.068;QD=5.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398800    GT:AD:DP:GQ:PL    0/1:13,9:22:99:168,0,363
2    39178493    rs441869    G    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398800    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    39185048    rs422854    C    T    248.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=20.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398800    GT:AD:DP:GQ:PL    0/1:4,8:12:99:278,0,129
2    39187190    rs6755527    T    C    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=S582P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_39186982_39187789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398800    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
2    39187519    rs958412    A    G    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=K691;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_39186982_39187789;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398800    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
2    39198966    rs2305516    A    G    1759.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430382    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1792,132,0
2    39214821    rs2290445    A    C    338.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395038    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:372,27,0
2    39224351    rs1454223    G    T    1886.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474390    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1919,141,0
2    39224615    rs5830551    G    GT    683.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=7;HaplotypeScore=43.2996;IndelType=I;MQ=60.47;MQ0=0;QD=29.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263879    GT:AD:DP:GQ:PL    1/1:3,20:23:60.18:725,60,0
2    39233500    rs7577088    G    A    2329.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263879    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2363,175,0
2    39239572    rs3796038    G    C    76.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263879    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:109,9,0
2    39251375    rs56299761    T    TCAC    1893.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=85.7027;IndelType=I;MQ=53.55;MQ0=0;QD=61.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263879    GT:AD:DP:GQ:PL    1/1:3,28:31:93.31:1935,93,0
2    39278066    rs4670907    C    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263879    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    39281730    rs997344    G    C    1079.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451331    GT:AD:DP:GQ:PL    1/1:0,28:28:81.27:1112,81,0
2    39282079    rs2060987    A    G    529.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451331    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:563,42,0
2    39402978    rs11393458    A    AG    342.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=14.7243;IndelType=I;MQ=60.0;MQ0=0;QD=42.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378803    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:384,24,0
2    39406572    rs7566123    C    A    679.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378803    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:712,54,0
2    39417839    rs2708223    A    G    125.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378803    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
2    39417860    rs6544209    T    C    82.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378803    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    39440727    rs10196407    G    C    560.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378803    GT:AD:DP:GQ:PL    1/1:0,20:20:54.10:594,54,0
2    39452861    rs11124663    C    T    111.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378803    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
2    39479122    rs3770678    G    C    106.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=11.78;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263881    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,183
2    39492102    rs6714566    T    C    87.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263881    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
2    39492144    rs3755178    C    A    33.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263881    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:63,0,30
2    39494197    rs2302749    C    T    152.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.657;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=9.53;ReadPosRankSum=-1.464;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495648    GT:AD:DP:GQ:PL    0/1:10,6:16:99:182,0,373
2    39494469    rs10865149    C    G    319.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.928;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.34;QD=15.96;ReadPosRankSum=0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495648    GT:AD:DP:GQ:PL    0/1:10,10:20:99:349,0,337
2    39507417    rs3755176    T    A    491.29    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=30;Dels=0.0;FS=4.494;HRun=0;HaplotypeScore=0.9578;MQ=59.23;MQ0=0;MQRankSum=-0.023;QD=16.38;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=T123;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_39507413_39507497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536018    GT:AD:DP:GQ:PL    0/1:13,16:30:99:521,0,378
2    39514136    rs3755172    T    C    546.67    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.038;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.541;QD=14.39;ReadPosRankSum=-0.979;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465701    GT:AD:DP:GQ:PL    0/1:20,18:38:99:577,0,663
2    39514204    rs3755171    G    C    73.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.44;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465701    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,145
2    39519718    rs11124672    T    C    151.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=15.11;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414968    GT:AD:DP:GQ:PL    0/1:4,6:10:99:181,0,127
2    39526842    rs2111382    A    C    751.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263881    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:785,57,0
2    39553271    rs3815594    A    G    1339.78    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.921;DB;DP=75;Dels=0.0;FS=3.644;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.346;QD=17.86;ReadPosRankSum=0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263881    GT:AD:DP:GQ:PL    0/1:34,41:75:99:1370,0,1204
2    39558928    rs6760382    G    A    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.25;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263881    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,110
2    39564620    rs1125839    C    A    592.65    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.774;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=16.02;ReadPosRankSum=-0.966;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437968    GT:AD:DP:GQ:PL    0/1:16,21:37:99:623,0,524
2    39570427    rs3732053    T    C    156.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=19.56;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263881    GT:AD:DP:GQ:PL    0/1:3,5:8:99:186,0,101
2    39583446    rs7422651    A    G    1623.92    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.819;DB;DP=122;Dels=0.0;FS=0.728;HRun=0;HaplotypeScore=1.9783;MQ=60.0;MQ0=0;MQRankSum=-1.976;QD=13.31;ReadPosRankSum=-0.366;SNPEFF_AMINO_ACID_CHANGE=I63;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_39583390_39583480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263881    GT:AD:DP:GQ:PL    0/1:65,57:122:99:1654,0,2033
2    39893087    .    A    G    72.19    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.5784;MQ=40.36;MQ0=0;MQRankSum=-1.38;QD=10.31;ReadPosRankSum=0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM178;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437068    GT:AD:DP:GQ:PL    0/1:2,5:7:43.07:102,0,43
2    40391789    rs1005213    G    T    252.68    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=0.0;QD=22.97;ReadPosRankSum=-1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332839    GT:AD:DP:GQ:PL    0/1:1,10:11:10.71:282,0,11
2    40392313    rs434725    G    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332839    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
2    40402275    rs6734847    G    A    578.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332839    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:611,45,0
2    40403104    rs106706    A    G    941.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332839    GT:AD:DP:GQ:PL    1/1:0,31:31:75.22:974,75,0
2    40404839    rs433572    C    T    655.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332839    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:688,51,0
2    42119281    rs10186380    T    G    909.02    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=1.05;DB;DP=69;Dels=0.0;FS=19.021;HRun=2;HaplotypeScore=0.734;MQ=59.46;MQ0=0;MQRankSum=2.25;QD=13.17;ReadPosRankSum=-1.062;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC104654.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398796    GT:AD:DP:GQ:PL    0/1:35,34:69:99:939,0,1241
2    42119566    rs6719730    T    A    72.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.16;ReadPosRankSum=0.988;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC104654.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398796    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,104
2    42120150    rs4633960    C    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC104654.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398796    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    42120156    rs4268965    T    C    41.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC104654.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398796    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
2    42179937    rs77388705    G    C    83.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.77;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013480.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403980    GT:AD:DP:GQ:PL    0/1:2,3:5:27.97:114,0,28
2    42181169    rs76580820    T    A    67.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.271;QD=5.21;ReadPosRankSum=0.271;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013480.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403980    GT:AD:DP:GQ:PL    0/1:8,5:13:97.67:98,0,237
2    42181226    rs10180209    C    A    418.14    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.352;DB;DP=31;Dels=0.0;FS=3.393;HRun=0;HaplotypeScore=0.9665;MQ=59.25;MQ0=0;MQRankSum=-0.217;QD=13.49;ReadPosRankSum=0.178;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013480.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403980    GT:AD:DP:GQ:PL    0/1:16,15:31:99:448,0,471
2    42275819    rs11897440    T    C    170.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=G160;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_42275160_42275978;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKDCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294964    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
2    42280448    rs34853050    G    A    1529.06    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.5;QD=14.43;ReadPosRankSum=-0.999;SNPEFF_AMINO_ACID_CHANGE=A237T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_42280379_42280501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKDCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294964    GT:AD:DP:GQ:PL    0/1:51,55:106:99:1559,0,1469
2    42280970    rs1550431    G    A    36.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=4.06;ReadPosRankSum=-1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKDCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485578    GT:AD:DP:GQ:PL    0/1:5,4:9:66.55:67,0,184
2    42284884    rs1044305    T    C    153.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=15.36;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKDCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401498    GT:AD:DP:GQ:PL    0/1:4,6:10:99:184,0,135
2    42396722    rs7233    A    G    323.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.05;DB;DP=24;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.491;QD=13.47;ReadPosRankSum=-0.606;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_42396490_42396776;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    0/1:12,12:24:99:353,0,365
2    42488045    rs2302346    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
2    42488198    rs2302345    A    G    735.11    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.738;DB;DP=50;Dels=0.0;FS=2.637;HRun=0;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;MQRankSum=-0.825;QD=14.7;ReadPosRankSum=1.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    0/1:24,26:50:99:765,0,776
2    42491751    rs35132936    C    T    37.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.44;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409040    GT:AD:DP:GQ:PL    0/1:2,3:5:67.18:67,0,68
2    42491951    rs6735571    C    T    327.48    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=17;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.732;QD=19.26;ReadPosRankSum=-0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409040    GT:AD:DP:GQ:PL    0/1:7,10:17:99:357,0,238
2    42492191    rs13016514    A    C    273.83    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.003;QD=21.06;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409040    GT:AD:DP:GQ:PL    0/1:4,9:13:99:304,0,125
2    42509829    rs6723361    T    C    101.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.69;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,135
2    42510018    rs6736913    A    G    2084.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_AMINO_ACID_CHANGE=K225E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_42509963_42510112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402711    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2118,187,0
2    42511627    rs2286704    T    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    42511903    rs6744779    A    G    405.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.358;QD=22.53;ReadPosRankSum=1.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    0/1:6,12:18:99:436,0,193
2    42513659    rs3732195    C    G    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
2    42515388    rs10202624    A    G    2255.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=I324V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_42515367_42515462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402711    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2289,166,0
2    42515437    rs28651764    A    G    810.39    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.725;DB;DP=74;Dels=0.0;FS=4.672;HRun=1;HaplotypeScore=1.5731;MQ=60.0;MQ0=0;MQRankSum=0.142;QD=10.95;ReadPosRankSum=-0.867;SNPEFF_AMINO_ACID_CHANGE=K340R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_42515367_42515462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402711    GT:AD:DP:GQ:PL    0/1:42,32:74:99:840,0,1266
2    42515501    rs10179237    C    T    379.73    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.203;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8007;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=12.25;ReadPosRankSum=-0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    0/1:17,14:31:99:410,0,416
2    42515670    rs13017804    A    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    42522078    rs6544537    C    T    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
2    42522756    rs10490555    A    G    227.49    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.66;MQ0=0;MQRankSum=1.818;QD=22.75;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    0/1:3,7:10:55.90:257,0,56
2    42531871    rs12464702    G    T    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:72,0,34
2    42544821    rs7558501    C    T    192.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:225,18,0
2    42553210    rs2286703    C    A    973.09    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.079;DB;DP=71;Dels=0.0;FS=1.532;HRun=3;HaplotypeScore=0.9995;MQ=59.47;MQ0=0;MQRankSum=1.053;QD=13.71;ReadPosRankSum=-2.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    0/1:37,34:71:99:1003,0,1260
2    42553578    rs11682029    A    C    198.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318522    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:231,18,0
2    42556022    rs2286700    A    T    999.14    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.726;DB;DP=63;Dels=0.0;FS=4.169;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.791;QD=15.86;ReadPosRankSum=1.819;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX7A2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468711    GT:AD:DP:GQ:PL    0/1:28,35:63:99:1029,0,857
2    42588195    rs3764906    T    C    197.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=14;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.493;QD=14.13;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX7A2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234301    GT:AD:DP:GQ:PL    0/1:7,7:14:99:228,0,171
2    42836516    rs6720277    A    G    1452.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282366    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1485,117,0
2    42871144    rs2272448    C    G    105.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.453;QD=10.53;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282366    GT:AD:DP:GQ:PL    0/1:5,5:10:99:135,0,184
2    42922888    rs66547039    AT    A    754.75    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=2.178;DB;DP=96;FS=2.702;HRun=13;HaplotypeScore=358.6986;IndelType=D;MQ=58.27;MQ0=0;MQRankSum=2.465;QD=7.86;ReadPosRankSum=0.343;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282366    GT:AD:DP:GQ:PL    0/1:44,50:96:99:794,0,802
2    42931217    rs2304658    A    C    834.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282366    GT:AD:DP:GQ:PL    1/1:0,24:24:66.19:867,66,0
2    42935481    rs2043912    C    T    74.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282366    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
2    42935961    rs4953577    C    T    3954.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282366    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3954,289,0
2    42935979    rs4953578    C    T    4548.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.4861;MQ=59.83;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282366    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4549,340,0
2    42990336    rs1992286    T    G    267.33    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=17;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=3.807;MQ=49.31;MQ0=0;MQRankSum=2.115;QD=15.73;ReadPosRankSum=1.03;SNPEFF_AMINO_ACID_CHANGE=R328;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_42989642_42991401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXER1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378661    GT:AD:DP:GQ:PL    0/1:7,10:17:99:297,0,147
2    42990344    .    C    G    47.32    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.061;DP=16;Dels=0.0;FS=28.543;HRun=2;HaplotypeScore=4.9508;MQ=50.31;MQ0=0;MQRankSum=-2.143;QD=2.96;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=A326P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_42989642_42991401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXER1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378661    GT:AD:DP:GQ:PL    0/1:11,5:16:77.32:77,0,250
2    42996809    rs144024954    G    A    107.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=13.48;ReadPosRankSum=-2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HAAO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406924    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,128
2    42996819    rs13413507    G    A    102.47    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=11.39;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HAAO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406924    GT:AD:DP:GQ:PL    0/1:4,5:9:99:132,0,135
2    43015401    rs3816179    T    C    43.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HAAO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294973    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    43015612    rs3816181    G    T    841.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HAAO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294973    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:875,63,0
2    43015719    rs3816183    T    C    1472.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_AMINO_ACID_CHANGE=I37V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_43015669_43015747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HAAO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294973    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1505,117,0
2    43015757    rs3816184    G    A    1156.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HAAO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294973    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1190,90,0
2    43015902    rs3816185    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HAAO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294973    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    43019730    rs2304656    A    G    564.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HAAO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406924    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:597,45,0
2    43625078    rs7605661    T    C    899.28    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.987;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=12.67;ReadPosRankSum=1.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330266    GT:AD:DP:GQ:PL    0/1:39,32:71:99:929,0,1279
2    43625184    rs33979934    T    A    1560.26    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.999;DB;DP=109;Dels=0.0;FS=1.561;HRun=0;HaplotypeScore=1.9652;MQ=59.58;MQ0=0;MQRankSum=0.575;QD=14.31;ReadPosRankSum=-0.973;SNPEFF_AMINO_ACID_CHANGE=T1066S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_43625110_43625278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THADA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415080    GT:AD:DP:GQ:PL    0/1:52,57:109:99:1590,0,1525
2    43779206    .    G    GT    899.39    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.927;DP=50;FS=1.117;HRun=1;HaplotypeScore=105.2125;IndelType=I;MQ=59.76;MQ0=0;MQRankSum=0.564;QD=17.99;ReadPosRankSum=0.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404790    GT:AD:DP:GQ:PL    0/1:26,24:50:99:938,0,748
2    43799070    rs3752355    C    T    1476.74    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=4.099;DB;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=59.58;MQ0=0;MQRankSum=1.547;QD=16.78;ReadPosRankSum=1.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330266    GT:AD:DP:GQ:PL    0/1:41,47:88:99:1507,0,1393
2    43802261    rs970175    C    A    617.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330266    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:650,48,0
2    43871983    rs12105773    T    C    483.96    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.552;DB;DP=38;Dels=0.0;FS=1.71;HRun=1;HaplotypeScore=1.8268;MQ=59.51;MQ0=0;MQRankSum=-2.232;QD=12.74;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:22,16:38:99:514,0,617
2    43872032    rs4450661    A    G    280.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.178;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.746;QD=13.36;ReadPosRankSum=-0.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:12,9:21:99:310,0,395
2    43872068    rs182654764    T    A    82.39    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.49;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:7,4:11:99:112,0,253
2    43902511    rs755862    G    C    31.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.22;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:3,3:6:61.32:61,0,106
2    43903066    rs3828297    A    G    2861.60    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DB;DP=212;Dels=0.0;FS=1.087;HRun=0;HaplotypeScore=3.4328;MQ=59.89;MQ0=0;MQRankSum=-0.672;QD=13.5;ReadPosRankSum=0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:111,101:212:99:2892,0,3209
2    43903354    rs4952675    T    C    129.06    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.052;DB;DP=36;Dels=0.0;FS=3.972;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-2.619;QD=3.58;ReadPosRankSum=0.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:29,7:36:99:159,0,998
2    43903483    rs4952995    T    C    140.30    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.271;DB;DP=21;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.289;QD=6.68;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:12,9:21:99:170,0,368
2    43905898    .    G    GAGGTGGAGGTGC    535.99    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.774;DP=21;FS=0.0;HRun=0;HaplotypeScore=172.9702;IndelType=I;MQ=54.39;MQ0=0;MQRankSum=-1.268;QD=25.52;ReadPosRankSum=0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:14,6:21:99:575,0,797
2    43921489    rs12616572    A    T    480.19    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.813;QD=14.55;ReadPosRankSum=0.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:18,15:33:99:510,0,629
2    43924171    rs10211617    T    A    69.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=7.73;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460356    GT:AD:DP:GQ:PL    0/1:6,3:9:99:100,0,185
2    43926943    rs7606783    T    A    548.01    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=33;Dels=0.0;FS=1.453;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.949;QD=16.61;ReadPosRankSum=0.419;SNPEFF_AMINO_ACID_CHANGE=P282;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_43926786_43927747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:14,19:33:99:578,0,422
2    43931176    rs4953002    T    C    639.55    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.328;DB;DP=57;Dels=0.0;FS=7.437;HRun=0;HaplotypeScore=2.9985;MQ=55.39;MQ0=0;MQRankSum=-1.181;QD=11.22;ReadPosRankSum=0.853;SNPEFF_AMINO_ACID_CHANGE=N569;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_43931120_43931195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:30,27:57:99:670,0,735
2    43931321    rs4953003    G    A    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.59;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,108
2    43936974    rs9679009    A    G    130.26    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.034;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=9.3;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:8,6:14:99:160,0,281
2    43937500    rs17414174    T    C    537.21    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=4.578;DB;DP=39;Dels=0.0;FS=1.411;HRun=0;HaplotypeScore=0.8321;MQ=58.81;MQ0=0;MQRankSum=-0.268;QD=13.77;ReadPosRankSum=-0.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:21,18:39:99:567,0,713
2    43939525    rs13028613    A    G    894.50    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=46;Dels=0.0;FS=1.353;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.079;QD=19.45;ReadPosRankSum=0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:18,28:46:99:924,0,532
2    43947944    rs17031344    A    G    322.80    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=31;Dels=0.0;FS=2.004;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.547;QD=10.41;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:19,12:31:99:353,0,623
2    43953664    rs7574334    A    G    276.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.442;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=15.36;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:9,9:18:99:307,0,321
2    43991357    rs7565517    A    C    974.01    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=3.498;DB;DP=61;Dels=0.0;FS=10.004;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.474;QD=15.97;ReadPosRankSum=-1.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282406    GT:AD:DP:GQ:PL    0/1:25,36:61:99:1004,0,803
2    44010620    rs3815995    G    A    587.43    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.837;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;MQRankSum=-0.028;QD=11.3;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2LI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260605    GT:AD:DP:GQ:PL    0/1:26,25:52:99:617,0,765
2    44021826    rs9309107    T    A    939.35    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.572;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.15;MQ0=0;MQRankSum=0.628;QD=11.46;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=F184Y;SNPEFF_CODON_CHANGE=tTt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_44021596_44022318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2LI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406852    GT:AD:DP:GQ:PL    0/1:47,35:82:99:969,0,1392
2    44028013    rs11556157    A    T    443.36    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.346;DB;DP=33;Dels=0.0;FS=1.377;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.164;QD=13.44;ReadPosRankSum=-1.002;SNPEFF_AMINO_ACID_CHANGE=I104L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_44027980_44028056;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2LI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443170    GT:AD:DP:GQ:PL    0/1:14,19:33:99:473,0,456
2    44028651    .    C    T    33.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DP=9;Dels=0.0;FS=4.26;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=3.67;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2LI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489222    GT:AD:DP:GQ:PL    0/1:5,4:9:63.01:63,0,189
2    44036800    rs4952683    A    G    157.73    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.449;QD=8.76;ReadPosRankSum=1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260645    GT:AD:DP:GQ:PL    0/1:11,7:18:99:188,0,326
2    44036922    rs10186552    T    C    295.60    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.892;DB;DP=23;Dels=0.0;FS=4.693;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=12.32;ReadPosRankSum=-0.651;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260645    GT:AD:DP:GQ:PL    0/1:10,13:23:99:326,0,358
2    44040401    rs6720173    G    C    394.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.472;DB;DP=24;Dels=0.0;FS=1.935;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.415;QD=16.43;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=Q209E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_44039699_44040448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543989    GT:AD:DP:GQ:PL    0/1:12,12:24:99:424,0,438
2    44050888    rs4148187    G    A    44.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260645    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:74,0,25
2    44055446    rs4557032    G    A    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260645    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    44071625    rs4148209    C    A    260.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=24;Dels=0.0;FS=2.114;HRun=1;HaplotypeScore=1.8583;MQ=60.0;MQ0=0;MQRankSum=-0.908;QD=10.85;ReadPosRankSum=-0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:14,10:24:99:290,0,466
2    44071639    rs4148210    C    T    251.45    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.414;DB;DP=26;Dels=0.0;FS=1.85;HRun=1;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=-0.638;QD=9.67;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:16,10:26:99:281,0,514
2    44071743    rs4148211    A    G    247.99    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=25;Dels=0.0;FS=15.079;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=9.92;ReadPosRankSum=0.232;SNPEFF_AMINO_ACID_CHANGE=Y54C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_44071646_44071747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:13,12:25:99:278,0,389
2    44071833    rs4148212    A    C    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:71,0,28
2    44071852    rs4148213    G    C    82.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    44079004    rs4148214    T    C    397.71    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.15;DB;DP=40;Dels=0.0;FS=4.388;HRun=1;HaplotypeScore=2.5173;MQ=58.84;MQ0=0;MQRankSum=0.659;QD=9.94;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:21,19:40:99:428,0,677
2    44101214    rs10709506    CA    C    585.31    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.612;DB;DP=42;FS=0.0;HRun=1;HaplotypeScore=105.3509;IndelType=D;MQ=60.77;MQ0=0;MQRankSum=0.433;QD=13.94;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:24,18:42:99:624,0,980
2    44101394    rs58702449    A    G    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.48;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,69
2    44101430    rs4952689    T    G    235.33    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.817;QD=16.81;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:6,8:14:99:265,0,166
2    44101538    rs28517482    C    T    726.30    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.351;DB;DP=74;Dels=0.01;FS=0.0;HRun=5;HaplotypeScore=2.5432;MQ=59.07;MQ0=0;MQRankSum=0.893;QD=9.68;ReadPosRankSum=0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:47,27:74:99:756,0,1471
2    44101649    rs3841852    G    GC    1043.33    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.346;DB;DP=62;FS=3.924;HRun=6;HaplotypeScore=148.162;IndelType=I;MQ=60.13;MQ0=0;MQRankSum=2.04;QD=16.83;ReadPosRankSum=-0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1082,0,397
2    44102491    rs4148221    C    T    225.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=25;Dels=0.0;FS=1.685;HRun=0;HaplotypeScore=0.8941;MQ=59.07;MQ0=0;MQRankSum=0.439;QD=9.0;ReadPosRankSum=-1.317;SNPEFF_AMINO_ACID_CHANGE=A565;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_44102285_44102552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:15,10:25:99:255,0,499
2    44104925    rs6544718    T    C    790.84    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=46;Dels=0.0;FS=2.717;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=17.19;ReadPosRankSum=0.122;SNPEFF_AMINO_ACID_CHANGE=V632A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_44104915_44105605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272286    GT:AD:DP:GQ:PL    0/1:20,26:46:99:821,0,647
2    44116836    rs2955280    C    T    717.90    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.325;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.11;MQ0=0;MQRankSum=-1.308;QD=15.27;ReadPosRankSum=-0.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260665    GT:AD:DP:GQ:PL    0/1:22,25:47:99:748,0,637
2    44145374    rs7568481    G    T    873.84    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=4.34;DB;DP=63;Dels=0.0;FS=5.463;HRun=0;HaplotypeScore=0.8667;MQ=58.89;MQ0=0;MQRankSum=0.051;QD=13.87;ReadPosRankSum=0.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260665    GT:AD:DP:GQ:PL    0/1:30,33:63:99:904,0,887
2    44152180    rs4952694    G    A    1067.93    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.305;DB;DP=71;Dels=0.0;FS=1.153;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.098;QD=15.04;ReadPosRankSum=-0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260665    GT:AD:DP:GQ:PL    0/1:35,36:71:99:1098,0,1060
2    44152406    rs4953039    G    T    391.32    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.651;QD=17.01;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260665    GT:AD:DP:GQ:PL    0/1:10,13:23:99:421,0,354
2    44162166    rs11899538    A    G    123.74    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=17.68;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260665    GT:AD:DP:GQ:PL    0/1:1,6:7:20.19:154,0,20
2    44172444    rs28394191    A    C    438.82    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=28;Dels=0.0;FS=2.218;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.691;QD=15.67;ReadPosRankSum=-0.691;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467058    GT:AD:DP:GQ:PL    0/1:13,15:28:99:469,0,468
2    44173087    rs66626626    CAATT    C    215.84    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=29.8617;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=35.97;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467058    GT:AD:DP:GQ:PL    0/1:1,5:6:60.16:255,0,60
2    44173422    rs7594526    T    G    392.36    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.643;QD=17.06;ReadPosRankSum=-0.713;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467058    GT:AD:DP:GQ:PL    0/1:10,13:23:99:422,0,348
2    44187829    rs10190161    A    C    418.33    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.416;DB;DP=27;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=0.61;QD=15.49;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409659    GT:AD:DP:GQ:PL    0/1:12,15:27:99:448,0,423
2    44206799    rs10170954    A    C    129.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.15;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260665    GT:AD:DP:GQ:PL    0/1:3,5:8:99:159,0,100
2    44209477    rs6741066    C    T    749.59    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.777;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.45;QD=12.7;ReadPosRankSum=1.69;SNPEFF_AMINO_ACID_CHANGE=Q56;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_44209377_44209573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPPRC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447246    GT:AD:DP:GQ:PL    0/1:32,26:58:99:780,0,872
2    44502788    rs3738985    A    C    1221.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=37.02;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000540334    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1255,93,0
2    44512971    rs3768919    G    A    985.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.07;MQ0=0;QD=39.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260649    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1018,75,0
2    44531081    rs4953083    G    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.76;MQ0=0;QD=28.87;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_44530945_44531477;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409740    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    44531484    rs3738984    C    T    1120.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410056    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1153,87,0
2    44547574    rs698761    G    A    1898.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.56;SNPEFF_AMINO_ACID_CHANGE=M249I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_44547338_44547937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409740    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1932,141,0
2    44547909    rs8886    T    C    210.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:243,21,0
2    44548613    rs2241871    T    C    979.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409380    GT:AD:DP:GQ:PL    1/1:0,30:30:75.22:1012,75,0
2    44549204    rs2241870    A    G    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260649    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    44549229    rs2241869    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260649    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
2    44550233    rs2053455    C    T    321.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260649    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
2    44550290    rs2053454    A    G    285.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260649    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:319,27,0
2    44553734    rs10183231    G    A    961.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    1/1:0,25:25:75.23:995,75,0
2    44556298    rs2033951    T    C    975.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    1/1:0,30:30:75.23:1008,75,0
2    44559583    rs76399930    G    A    293.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.643;QD=13.34;ReadPosRankSum=-0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    0/1:11,11:22:99:324,0,352
2    44565447    rs2289463    A    T    762.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:796,60,0
2    44569474    rs2304769    G    A    1204.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438314    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1238,93,0
2    44569700    rs3217486    AAAT    A    2175.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=316.118;IndelType=D;MQ=46.2;MQ0=0;QD=41.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438314    GT:AD:DP:GQ:PL    1/1:8,45:53:99:2217,135,0
2    44569739    rs71393260    T    TA    239.21    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.436;DB;DP=37;FS=0.0;HRun=15;HaplotypeScore=321.2889;IndelType=I;MQ=44.84;MQ0=0;MQRankSum=-1.571;QD=6.47;ReadPosRankSum=-2.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438314    GT:AD:DP:GQ:PL    0/1:17,12:37:19.44:278,0,19
2    44570776    rs17580226    C    T    666.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438314    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:699,51,0
2    44570804    rs12053381    C    A    1010.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438314    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1044,78,0
2    44573624    rs698763    G    A    778.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:811,60,0
2    44573658    rs698764    T    C    286.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:319,24,0
2    44573671    rs698765    G    T    198.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:231,18,0
2    44586379    .    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PREPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260648    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    44617324    rs1085486    T    A    1483.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-1.193;QD=32.96;ReadPosRankSum=-1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378494    GT:AD:DP:GQ:PL    1/1:1,44:45:81.64:1516,82,0
2    44618811    rs1067346    C    A    914.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=39.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378494    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:948,69,0
2    44618897    rs1067345    G    A    5160.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9929;MQ=59.84;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378494    GT:AD:DP:GQ:PL    1/1:0,148:148:99:5160,379,0
2    44942384    rs343957    C    G    279.24    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.261;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.66;MQ0=0;MQRankSum=0.754;QD=13.96;ReadPosRankSum=-2.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378494    GT:AD:DP:GQ:PL    0/1:6,13:20:99:309,0,194
2    44993487    rs11679997    C    T    122.21    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.792;DB;DP=20;Dels=0.0;FS=4.559;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.902;QD=6.11;ReadPosRankSum=-0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378494    GT:AD:DP:GQ:PL    0/1:13,7:20:99:152,0,484
2    45171842    rs62840660    A    G    227.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_AMINO_ACID_CHANGE=A314;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_45171707_45173216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260653    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:260,21,0
2    45402400    rs7595106    G    A    546.85    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.435;DB;DP=78;Dels=0.0;FS=8.226;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=7.01;ReadPosRankSum=-1.255;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC009236.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378479    GT:AD:DP:GQ:PL    0/1:54,24:78:99:577,0,1808
2    45402571    rs11125005    A    C    208    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC009236.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378479    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
2    45616849    rs3731944    T    C    90.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.53;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:8,4:12:99:120,0,296
2    45620417    rs10432665    T    C    111.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.93;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:4,4:8:99:141,0,139
2    45647043    rs3213788    C    G    273.46    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=31;Dels=0.0;FS=13.601;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.011;QD=8.82;ReadPosRankSum=-1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:19,12:31:99:303,0,527
2    45715556    rs71394834    G    GAA    142.26    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=13;FS=0.0;HRun=11;HaplotypeScore=39.5617;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=10.94;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:8,5:13:99:181,0,163
2    45715648    rs3755080    T    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    45773816    rs2276657    C    G    179.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=19.93;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493649    GT:AD:DP:GQ:PL    0/1:3,6:9:89.85:209,0,90
2    45774050    rs6708810    G    A    56.22    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=5.11;ReadPosRankSum=1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:8,3:11:86.22:86,0,297
2    45774548    rs1865685    A    C    291.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
2    45780962    rs3816107    C    G    162.83    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=14.8;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:5,6:11:99:193,0,145
2    45806963    .    TA    T    206.98    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DP=93;FS=12.958;HRun=15;HaplotypeScore=582.1995;IndelType=D;MQ=53.26;MQ0=0;MQRankSum=1.147;QD=2.2;ReadPosRankSum=1.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:67,19:93:99:246,0,953
2    45806978    rs75662016    AG    A    48.94    QDFilter2    AB=0.952;AC=1;AF=0.50;AN=2;BaseQRankSum=4.941;DB;DP=118;FS=44.121;HRun=1;HaplotypeScore=687.6512;IndelType=D;MQ=54.11;MQ0=0;MQRankSum=-2.472;QD=0.41;ReadPosRankSum=-1.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:113,6:118:87.97:88,0,1711
2    45826526    rs35501868    CT    C    911.67    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=4.116;DB;DP=55;FS=0.0;HRun=1;HaplotypeScore=136.141;IndelType=D;MQ=61.17;MQ0=0;MQRankSum=-0.109;QD=16.58;ReadPosRankSum=0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461805    GT:AD:DP:GQ:PL    0/1:28,27:55:99:951,0,1123
2    45829286    rs12998864    A    C    452.61    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.105;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.274;QD=18.1;ReadPosRankSum=-0.538;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263736    GT:AD:DP:GQ:PL    0/1:9,16:25:99:483,0,299
2    45879610    rs637909    A    G    115    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=23.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306156    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:147,12,0
2    46070269    rs3214783    T    TC    918.85    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.742;DB;DP=66;FS=0.0;HRun=7;HaplotypeScore=175.8154;IndelType=I;MQ=60.21;MQ0=0;MQRankSum=1.23;QD=13.92;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421201    GT:AD:DP:GQ:PL    0/1:35,31:66:99:958,0,529
2    46207567    rs2249505    C    T    188.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.093;QD=13.5;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476675    GT:AD:DP:GQ:PL    0/1:7,7:14:99:219,0,191
2    46211935    rs2595213    T    C    68.11    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=5.24;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476675    GT:AD:DP:GQ:PL    0/1:9,4:13:98.10:98,0,336
2    46237446    rs1987070    C    A    767.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=45;Dels=0.0;FS=1.647;HRun=1;HaplotypeScore=0.6651;MQ=58.97;MQ0=0;MQRankSum=-1.494;QD=17.05;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306156    GT:AD:DP:GQ:PL    0/1:18,27:45:99:797,0,618
2    46583187    rs2278754    A    T    498.20    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.35;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.662;QD=23.72;ReadPosRankSum=0.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263734    GT:AD:DP:GQ:PL    0/1:6,15:21:99:528,0,171
2    46583235    rs6743991    C    A    1532.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.49;MQ0=0;QD=32.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263734    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1565,117,0
2    46583278    rs61586942    C    CG    435.61    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=4.836;DB;DP=70;FS=3.584;HRun=0;HaplotypeScore=661.0401;IndelType=I;MQ=57.58;MQ0=0;MQRankSum=-2.446;QD=6.22;ReadPosRankSum=0.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263734    GT:AD:DP:GQ:PL    0/1:48,22:70:99:475,0,1158
2    46583279    .    C    CT    469.81    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=4.856;DP=71;FS=3.515;HRun=0;HaplotypeScore=670.3818;IndelType=I;MQ=57.77;MQ0=0;MQRankSum=-1.538;QD=6.62;ReadPosRankSum=0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263734    GT:AD:DP:GQ:PL    0/1:49,22:71:99:509,0,1092
2    46583281    rs35508970    C    CT    2786.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;FS=0.0;HRun=0;HaplotypeScore=508.515;IndelType=I;MQ=57.12;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263734    GT:AD:DP:GQ:PL    1/1:30,46:76:99:2829,221,0
2    46584059    rs34136947    T    G    109.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.922;QD=12.12;ReadPosRankSum=1.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475822    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,139
2    46706618    rs3814047    C    G    199.36    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=14.24;ReadPosRankSum=-1.093;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018682.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432241    GT:AD:DP:GQ:PL    0/1:6,8:14:99:229,0,199
2    46739157    rs3814045    A    G    1396.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP6V1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524249    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1429,117,0
2    46808243    rs17038378    GGA    G    1182.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=84.8338;IndelType=D;MQ=54.42;MQ0=0;QD=47.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306465    GT:AD:DP:GQ:PL    1/1:0,25:25:75.26:1224,75,0
2    46819815    rs2305350    A    G    332.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281382    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
2    46839477    rs1824050    T    C    223.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.88;SNPEFF_AMINO_ACID_CHANGE=A109;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_46839367_46839483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281382    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:257,18,0
2    46842410    rs2242033    A    G    482.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281382    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:516,39,0
2    46845849    rs2122715    A    G    752.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRIPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238892    GT:AD:DP:GQ:PL    1/1:0,25:25:69.17:786,69,0
2    46986416    rs6738426    A    G    1501.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=T249;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_46985658_46990268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOCS5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306503    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1535,123,0
2    46987300    rs3768720    T    G    610.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOCS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306503    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:644,51,0
2    47045267    rs2289931    G    A    165.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016722.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409518    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
2    47045309    rs2289933    C    T    253.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016722.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409518    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:287,21,0
2    47045321    rs17773492    A    G    94.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=8.451;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.77;ReadPosRankSum=1.638;SNPEFF_AMINO_ACID_CHANGE=N31D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_47045319_47045370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016722.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409518    GT:AD:DP:GQ:PL    0/1:4,4:8:99:124,0,107
2    47049409    rs2278715    C    T    179.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=25.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016722.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479311    GT:AD:DP:GQ:PL    1/1:0,6:7:18.05:212,18,0
2    47049453    rs1053952    A    G    172.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016722.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479311    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
2    47083046    rs140311366    T    A    39.56    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=-0.55;QD=5.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016722.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422294    GT:AD:DP:GQ:PL    0/1:3,4:7:30.29:70,0,30
2    47083252    rs11691225    G    T    168.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.07;ReadPosRankSum=1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016722.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422294    GT:AD:DP:GQ:PL    0/1:6,6:12:99:199,0,198
2    47085398    rs2278711    C    T    258.38    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=15;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.772;QD=17.23;ReadPosRankSum=2.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016722.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422294    GT:AD:DP:GQ:PL    0/1:7,8:15:99:288,0,181
2    47184208    rs118098285    C    G    263.80    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.347;QD=13.88;ReadPosRankSum=0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:10,9:19:99:294,0,332
2    47201991    rs67758600    CT    C    209.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=16.0502;IndelType=D;MQ=61.78;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:252,18,0
2    47249239    rs3814036    A    G    31.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.31;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:3,2:5:61.54:62,0,104
2    47251469    rs2304290    G    C    82.84    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=0.95;DB;DP=22;Dels=0.0;FS=9.229;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;MQRankSum=-0.95;QD=3.77;ReadPosRankSum=-0.95;SNPEFF_AMINO_ACID_CHANGE=V184L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_47251426_47251498;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:17,5:22:99:113,0,504
2    47256297    rs2304289    C    T    205.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.706;DB;DP=18;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.088;QD=11.41;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:9,9:18:99:235,0,278
2    47256618    rs7575628    A    G    129.24    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.35;MQ0=0;MQRankSum=-1.493;QD=9.94;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:6,7:13:99:159,0,204
2    47273668    rs12712986    G    A    244.41    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.512;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=1.299;QD=14.38;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:8,9:17:99:274,0,295
2    47277043    rs2304287    C    G    207.59    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=4.393;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.034;QD=18.87;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:4,7:11:99:238,0,133
2    47278901    rs3739100    G    A    282.26    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.29;MQ0=0;MQRankSum=1.022;QD=8.82;ReadPosRankSum=1.22;SNPEFF_AMINO_ACID_CHANGE=S324;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_47278885_47279019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:17,14:32:99:312,0,388
2    47301029    rs3739099    A    G    305.90    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.805;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.342;QD=17.99;ReadPosRankSum=-0.83;SNPEFF_AMINO_ACID_CHANGE=V494;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_47300841_47301062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263737    GT:AD:DP:GQ:PL    0/1:7,10:17:99:336,0,182
2    47314048    rs2280647    T    C    138.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=13.86;ReadPosRankSum=-0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445927    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,179
2    47314052    rs1474394    T    C    355.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445927    GT:AD:DP:GQ:PL    1/1:0,10:11:30.10:389,30,0
2    47314492    rs10865215    A    G    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445927    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    47357458    rs58184321    A    G    616.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294947    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:650,48,0
2    47357564    rs59073987    A    T    127.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294947    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
2    47378855    rs2454081    A    T    137.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294947    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:170,15,0
2    47380203    rs815809    T    C    675.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294947    GT:AD:DP:GQ:PL    1/1:0,21:21:60.15:708,60,0
2    47382214    rs815806    C    G    286.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294947    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:320,24,0
2    47388765    rs62140343    C    G    277.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CALM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484408    GT:AD:DP:GQ:PL    1/1:0,19:19:35.93:311,36,0
2    47388766    rs2454085    A    G    265.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CALM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484408    GT:AD:DP:GQ:PL    1/1:0,19:19:35.92:299,36,0
2    47389342    .    ACC    A    168.84    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.23;DP=20;FS=0.0;HRun=2;HaplotypeScore=208.1707;IndelType=D;MQ=47.81;MQ0=0;MQRankSum=-2.91;QD=8.44;ReadPosRankSum=-0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CALM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489742    GT:AD:DP:GQ:PL    0/1:15,5:20:99:208,0,356
2    47601106    rs1126497    T    C    446.70    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.173;DB;DP=38;Dels=0.0;FS=13.265;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.37;QD=11.76;ReadPosRankSum=1.523;SNPEFF_AMINO_ACID_CHANGE=M115T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_47600947_47601187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPCAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263735    GT:AD:DP:GQ:PL    0/1:22,16:38:99:477,0,686
2    47612224    rs7584256    C    T    1016.08    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.478;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.007;QD=15.63;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263735    GT:AD:DP:GQ:PL    0/1:34,31:65:99:1046,0,1141
2    47613870    rs1421    T    C    257.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.258;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=16.11;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490733    GT:AD:DP:GQ:PL    0/1:8,8:16:99:288,0,274
2    47630550    rs2303426    C    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    47637065    rs17217758    C    T    107.86    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=21.57;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    0/1:1,4:5:26.19:138,0,26
2    47656801    rs2347794    G    A    146    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.22;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    0/1:4,5:9:99:176,0,140
2    47690404    rs3771278    T    C    163.88    SnpCluster    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.449;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.95;MQ0=0;MQRankSum=0.367;QD=8.63;ReadPosRankSum=-1.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    0/1:10,9:19:99:194,0,314
2    47690408    rs3771279    A    G    145.44    SnpCluster    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.95;MQ0=0;MQRankSum=-0.939;QD=7.65;ReadPosRankSum=-1.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    0/1:10,9:19:99:175,0,323
2    47690411    rs3771280    T    C    114.15    SnpCluster    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.32;MQ0=0;MQRankSum=0.342;QD=6.71;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    0/1:10,7:17:99:144,0,326
2    47693706    rs3732182    G    T    269.57    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=16.85;ReadPosRankSum=0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422810    GT:AD:DP:GQ:PL    0/1:7,9:16:99:300,0,221
2    47693788    rs12998837    A    T    617.36    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DB;DP=51;Dels=0.0;FS=6.838;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.293;QD=12.11;ReadPosRankSum=1.505;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422810    GT:AD:DP:GQ:PL    0/1:28,23:51:99:647,0,937
2    47693959    rs3732183    G    A    558.84    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.198;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.544;QD=12.15;ReadPosRankSum=-0.419;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422810    GT:AD:DP:GQ:PL    0/1:25,21:46:99:589,0,759
2    47698297    .    C    A    99.53    HaplotypeScoreFilter13    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DP=23;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=15.9022;MQ=42.43;MQ0=0;MQRankSum=-2.297;QD=4.33;ReadPosRankSum=2.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    0/1:6,17:23:99:130,0,156
2    47698308    rs3764959    A    G    101.12    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=16;Dels=0.0;FS=5.051;HRun=0;HaplotypeScore=0.0;MQ=41.27;MQ0=0;MQRankSum=-0.453;QD=6.32;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    0/1:11,5:16:99:131,0,224
2    47703885    rs4583514    G    A    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233146    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
2    47739551    rs2303424    A    G    619.84    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=39;Dels=0.0;FS=3.331;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=15.89;ReadPosRankSum=0.581;SNPEFF_AMINO_ACID_CHANGE=Q915R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_47739442_47740373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406134    GT:AD:DP:GQ:PL    0/1:17,22:39:99:650,0,552
2    48010488    rs1042821    G    A    202.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=12.63;ReadPosRankSum=-0.405;SNPEFF_AMINO_ACID_CHANGE=G39E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48010221_48010632;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234420    GT:AD:DP:GQ:PL    0/1:8,8:16:99:232,0,268
2    48022981    rs1800934    G    T    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.34;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405808    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,110
2    48030458    rs2072447    G    C    227.39    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.6;QD=16.24;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316377    GT:AD:DP:GQ:PL    0/1:5,9:14:99:257,0,168
2    48033890    rs59056100    CT    C    50.14    QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=34;FS=2.187;HRun=18;HaplotypeScore=303.3376;IndelType=D;MQ=54.32;MQ0=0;MQRankSum=-0.52;QD=1.47;ReadPosRankSum=0.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316377    GT:AD:DP:GQ:PL    0/1:23,10:34:89.17:89,0,196
2    48040904    rs77079615    G    GA    788.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=6;HaplotypeScore=48.1574;IndelType=I;MQ=60.93;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492225    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:831,66,0
2    48046012    .    TA    T    157.07    QDFilter2    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=2.439;DP=100;FS=1.28;HRun=15;HaplotypeScore=626.442;IndelType=D;MQ=55.59;MQ0=0;MQRankSum=0.363;QD=1.57;ReadPosRankSum=-1.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316377    GT:AD:DP:GQ:PL    0/1:74,21:100:99:196,0,1072
2    48059471    rs71956017    AAAAT    A    493.47    PASS    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=4.698;DB;DP=43;FS=1.328;HRun=0;HaplotypeScore=185.8924;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=0.284;QD=11.48;ReadPosRankSum=0.284;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378314    GT:AD:DP:GQ:PL    0/1:31,12:43:99:532,0,2409
2    48681997    rs77272589    G    C    169.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.295;QD=10.57;ReadPosRankSum=0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421486    GT:AD:DP:GQ:PL    0/1:9,6:16:99:199,0,314
2    48688463    rs36022363    A    C    88.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.929;QD=7.4;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281394    GT:AD:DP:GQ:PL    0/1:8,4:12:99:119,0,283
2    48713777    rs33994624    C    T    506.50    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.151;QD=15.83;ReadPosRankSum=0.491;SNPEFF_AMINO_ACID_CHANGE=S442;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48713770_48713897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281394    GT:AD:DP:GQ:PL    0/1:15,17:32:99:536,0,434
2    48722755    rs4443044    T    C    1281.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281394    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1314,96,0
2    48723183    rs6545042    G    A    119.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281394    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
2    48725610    rs3811519    C    T    631.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281394    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:664,48,0
2    48732944    rs4293602    A    G    131.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281394    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
2    48734576    rs6716341    G    A    838.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281394    GT:AD:DP:GQ:PL    1/1:0,27:27:66.18:872,66,0
2    48734725    rs6744619    A    C    46.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281394    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
2    48738687    rs4528813    G    C    850.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431614    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:883,66,0
2    48741595    rs11677398    T    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRAQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431614    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    48756555    rs6733533    A    C    425.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484110    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:458,36,0
2    48807796    rs17039250    A    C    773.94    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.691;DB;DP=61;Dels=0.0;FS=2.209;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.099;QD=12.69;ReadPosRankSum=0.873;SNPEFF_AMINO_ACID_CHANGE=K8N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48807724_48809702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:32,29:61:99:804,0,899
2    48807976    rs3828340    T    C    795.34    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.261;DB;DP=62;Dels=0.0;FS=10.8;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.387;QD=12.83;ReadPosRankSum=-0.373;SNPEFF_AMINO_ACID_CHANGE=D68;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48807724_48809702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:32,30:62:99:825,0,1016
2    48808152    rs940389    G    C    748.28    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.559;DB;DP=59;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.374;QD=12.68;ReadPosRankSum=1.2;SNPEFF_AMINO_ACID_CHANGE=R127T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48807724_48809702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:31,28:59:99:778,0,1000
2    48808594    rs3749142    C    T    854.56    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.952;DB;DP=49;Dels=0.0;FS=10.717;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=17.44;ReadPosRankSum=0.11;SNPEFF_AMINO_ACID_CHANGE=S274;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48807724_48809702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:23,26:49:99:885,0,758
2    48808882    rs3749144    T    A    630.32    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=54;Dels=0.0;FS=1.117;HRun=0;HaplotypeScore=1.81;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=11.67;ReadPosRankSum=1.148;SNPEFF_AMINO_ACID_CHANGE=P370;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48807724_48809702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:32,22:54:99:660,0,906
2    48808898    rs3749145    C    T    479.62    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.346;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.129;QD=10.43;ReadPosRankSum=0.644;SNPEFF_AMINO_ACID_CHANGE=L376;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48807724_48809702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:28,18:46:99:510,0,897
2    48809593    rs3792234    G    T    1124.11    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=67;Dels=0.0;FS=8.546;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.349;QD=16.78;ReadPosRankSum=-2.261;SNPEFF_AMINO_ACID_CHANGE=Q607H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48807724_48809702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:29,38:67:99:1154,0,910
2    48809756    rs3792235    T    C    389    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=24;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.259;QD=16.21;ReadPosRankSum=1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:10,14:24:99:419,0,299
2    48809873    rs3792236    T    C    145.22    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.932;QD=13.2;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309827    GT:AD:DP:GQ:PL    0/1:5,6:11:99:175,0,139
2    48822381    rs2140551    G    A    264.29    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.271;QD=15.55;ReadPosRankSum=-1.03;SNPEFF_AMINO_ACID_CHANGE=K716;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48822367_48826025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STON1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309835    GT:AD:DP:GQ:PL    0/1:7,10:17:99:294,0,204
2    48848295    rs13035544    C    T    265.07    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.156;DB;DP=34;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-1.535;QD=7.8;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403751    GT:AD:DP:GQ:PL    0/1:18,16:34:99:295,0,617
2    48897272    rs11899239    A    C    85.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.55;QD=12.26;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403751    GT:AD:DP:GQ:PL    0/1:3,4:7:92.09:116,0,92
2    48898539    rs7562038    C    T    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403751    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
2    48898798    rs3920390    T    A    2393.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.4214;MQ=59.71;MQ0=0;QD=30.3;SNPEFF_AMINO_ACID_CHANGE=V1093;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48898730_48898819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON1-GTF2A1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394751    GT:AD:DP:GQ:PL    1/1:0,78:79:99:2426,181,0
2    48906360    rs1464728    A    G    121.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403751    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
2    48906625    rs1965508    T    C    805.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508440    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:839,63,0
2    48915871    rs11125179    A    G    1587.53    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.683;DB;DP=95;Dels=0.0;FS=5.234;HRun=0;HaplotypeScore=1.5518;MQ=59.51;MQ0=0;MQRankSum=-0.971;QD=16.71;ReadPosRankSum=-0.949;SNPEFF_AMINO_ACID_CHANGE=D293;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48913921_48915988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LHCGR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344775    GT:AD:DP:GQ:PL    0/1:43,52:95:99:1618,0,1184
2    48921375    rs2293275    T    C    336.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.196;QD=16.8;ReadPosRankSum=1.813;SNPEFF_AMINO_ACID_CHANGE=N250S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_48921363_48921443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LHCGR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344775    GT:AD:DP:GQ:PL    0/1:8,12:20:99:366,0,202
2    48925746    rs6755901    C    T    1387.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508440    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1421,108,0
2    48935849    rs6733079    T    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LHCGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477576    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    48935930    rs34594563    T    C    344.15    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.868;QD=24.58;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508440    GT:AD:DP:GQ:PL    0/1:3,11:14:69.50:374,0,70
2    48948707    rs68073206    A    C    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508440    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
2    48950723    .    A    G    535.69    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DP=43;Dels=0.0;FS=2.929;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=12.46;ReadPosRankSum=-1.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508440    GT:AD:DP:GQ:PL    0/1:24,19:43:99:566,0,823
2    48952574    rs6545061    C    T    78.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.74;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508440    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:109,0,27
2    48952624    rs6545062    G    A    342.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508440    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:376,30,0
2    48952701    rs6545063    C    G    902.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=37.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508440    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:936,72,0
2    49189921    rs6166    C    T    1096.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=S416N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_49189854_49191105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541117    GT:AD:DP:GQ:PL    1/1:0,33:33:84.26:1129,84,0
2    49191041    rs6165    C    T    4284.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.355;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.787;MQ=59.17;MQ0=0;MQRankSum=0.125;QD=33.22;ReadPosRankSum=0.298;SNPEFF_AMINO_ACID_CHANGE=A245T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_49189296_49191105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346173    GT:AD:DP:GQ:PL    1/1:2,127:129:99:4285,280,0
2    49215977    rs2072488    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304421    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    49216284    rs2072487    C    T    208.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304421    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
2    49217916    rs2072486    T    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304421    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    49244559    rs2091787    A    G    108.47    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.881;QD=12.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304421    GT:AD:DP:GQ:PL    0/1:4,5:9:99:138,0,123
2    49381585    rs1394205    C    T    751.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;QD=28.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454032    GT:AD:DP:GQ:PL    1/1:0,26:26:60.19:784,60,0
2    49510173    rs7578654    A    C    6726.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=203;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,203:203:99:6726,509,0
2    50106569    rs71401050    G    GAAAC    503.52    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.413;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=100.9432;IndelType=I;MQ=59.35;MQ0=0;MQRankSum=0.158;QD=17.98;ReadPosRankSum=-0.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC078994.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415103    GT:AD:DP:GQ:PL    0/1:20,8:28:99:543,0,336
2    50170729    rs1345562    G    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    50201110    rs9636391    A    G    3016.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342183    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3049,238,0
2    50246637    rs10188520    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    50280283    rs1363050    T    C    521.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342183    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:555,42,0
2    50280338    rs1363049    G    A    1293.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342183    GT:AD:DP:GQ:PL    1/1:0,36:36:96.32:1326,96,0
2    50692358    rs1879318    C    T    197.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:231,18,0
2    50692560    rs3213756    A    G    994.02    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.022;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=13.62;ReadPosRankSum=1.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1024,0,1142
2    50692819    rs10168838    T    G    489.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:523,42,0
2    50693504    rs75315267    AAC    A    206.64    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=31.1722;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=0.365;QD=20.66;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:4,6:10:99:246,0,202
2    50699305    rs2075234    T    A    309.64    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.439;QD=12.9;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:14,10:24:99:340,0,496
2    50699758    rs2075233    C    T    50.98    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.586;QD=3.19;ReadPosRankSum=-1.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:11,5:16:80.97:81,0,410
2    50722928    rs2241175    G    T    198.34    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.639;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=7.63;ReadPosRankSum=0.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462791    GT:AD:DP:GQ:PL    0/1:18,8:26:99:228,0,625
2    50733545    rs13008919    G    T    743.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.582;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.811;QD=16.52;ReadPosRankSum=1.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:20,25:45:99:773,0,671
2    50733860    rs7584062    A    G    968.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1001,75,0
2    50758309    rs5831131    C    CA    461.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=3;HaplotypeScore=35.2914;IndelType=I;MQ=59.24;MQ0=0;QD=28.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    1/1:5,11:16:36.12:504,36,0
2    50758657    rs2066948    T    C    637.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:671,51,0
2    50765228    rs72882073    A    G    43.66    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.0;MQ0=0;MQRankSum=-0.592;QD=3.12;ReadPosRankSum=-0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:11,3:14:73.66:74,0,364
2    50780219    rs13429627    T    G    1018.32    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.497;DB;DP=61;Dels=0.0;FS=7.574;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.015;QD=16.69;ReadPosRankSum=0.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:29,32:61:99:1048,0,895
2    50858107    rs961405    T    A    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:71,0,33
2    50923313    .    CGTGT    C    197.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DP=10;FS=0.0;HRun=0;HaplotypeScore=62.8668;IndelType=D;MQ=59.87;MQ0=0;MQRankSum=1.589;QD=19.75;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:2,6:10:1.02:235,0,1
2    50966161    rs1713859    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    50966283    rs1546667    C    T    2319.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2352,175,0
2    51125707    rs62140645    C    G    919.82    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.301;DB;DP=84;Dels=0.0;FS=1.941;HRun=3;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-0.843;QD=10.95;ReadPosRankSum=1.438;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    0/1:51,33:84:99:950,0,1531
2    51148872    rs36106628    T    A    376.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496792    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:409,33,0
2    51206342    rs35296842    C    G    2378.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401669    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2412,181,0
2    53897525    rs3930    C    G    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.79;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470707    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,110
2    53920931    rs7563054    G    A    298.11    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=3.138;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.029;QD=11.04;ReadPosRankSum=0.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263634    GT:AD:DP:GQ:PL    0/1:17,10:27:99:328,0,529
2    53921270    rs3731970    C    T    113.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.93;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263634    GT:AD:DP:GQ:PL    0/1:2,4:6:64.59:144,0,65
2    53943696    rs3213768    C    T    974.95    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.806;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.348;QD=12.04;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263634    GT:AD:DP:GQ:PL    0/1:46,35:81:99:1005,0,1381
2    53955741    rs77366072    C    T    467.28    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.282;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.357;QD=17.31;ReadPosRankSum=-0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480522    GT:AD:DP:GQ:PL    0/1:11,16:27:99:497,0,382
2    53978187    rs115817165    G    A    148.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=14.9;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263634    GT:AD:DP:GQ:PL    0/1:4,6:10:99:179,0,132
2    53992593    rs2287339    A    T    1646.96    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.137;DB;DP=115;Dels=0.0;FS=0.699;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=1.446;QD=14.32;ReadPosRankSum=-1.793;SNPEFF_AMINO_ACID_CHANGE=A39;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_53992514_53992722;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263634    GT:AD:DP:GQ:PL    0/1:58,57:115:99:1677,0,1811
2    53995003    rs114675546    G    T    89.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=11.16;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263634    GT:AD:DP:GQ:PL    0/1:4,4:8:99:119,0,108
2    54014558    rs2287342    G    T    527.24    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.379;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=12.86;ReadPosRankSum=-0.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352846    GT:AD:DP:GQ:PL    0/1:19,22:41:99:557,0,588
2    54023247    rs113209514    GT    G    97.42    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=39.4723;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=6.09;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494373    GT:AD:DP:GQ:PL    0/1:9,7:16:99:136,0,122
2    54024626    rs2692514    C    T    182.97    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.365;DB;DP=28;Dels=0.0;FS=1.939;HRun=0;HaplotypeScore=0.5784;MQ=59.33;MQ0=0;MQRankSum=-1.297;QD=6.53;ReadPosRankSum=-0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494373    GT:AD:DP:GQ:PL    0/1:20,8:28:99:213,0,569
2    54035261    .    T    C    38.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.49;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352846    GT:AD:DP:GQ:PL    0/1:4,2:6:68.94:69,0,112
2    54035650    rs2287346    G    A    237.01    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=17;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.144;QD=13.94;ReadPosRankSum=-1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352846    GT:AD:DP:GQ:PL    0/1:8,9:17:99:267,0,252
2    54041983    rs2542571    G    T    710.51    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.243;DB;DP=47;Dels=0.0;FS=7.179;HRun=1;HaplotypeScore=1.7791;MQ=55.42;MQ0=0;MQRankSum=0.794;QD=15.12;ReadPosRankSum=1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352846    GT:AD:DP:GQ:PL    0/1:22,25:47:99:741,0,523
2    54114221    rs805397    T    C    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.7;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478731    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,99
2    54114967    rs805399    G    A    404.71    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=1.848;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=1.133;QD=16.19;ReadPosRankSum=0.894;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:9,16:25:99:435,0,301
2    54115904    rs805400    A    G    1022.78    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.697;DB;DP=79;Dels=0.0;FS=3.087;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=12.95;ReadPosRankSum=0.142;SNPEFF_AMINO_ACID_CHANGE=L1448;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_54115858_54115949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:42,37:79:99:1053,0,1161
2    54116003    rs805401    C    T    184.15    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=22;Dels=0.0;FS=3.882;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=8.37;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:13,9:22:99:214,0,482
2    54120025    rs805408    A    T    865.92    PASS    AB=0.302;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.97;DB;DP=43;Dels=0.0;FS=5.181;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.648;QD=20.14;ReadPosRankSum=-1.944;SNPEFF_AMINO_ACID_CHANGE=S1371T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_54119945_54120097;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:13,30:43:99:896,0,424
2    54120204    rs805409    A    G    113.62    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=22.72;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:144,0,26
2    54120591    rs805411    C    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,108
2    54120820    rs805412    G    A    951.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.69;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.52;ReadPosRankSum=-1.616;SNPEFF_AMINO_ACID_CHANGE=C1343;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_54120811_54120936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:38,38:76:99:981,0,1238
2    54122646    rs2302876    C    T    691.37    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.331;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=16.86;ReadPosRankSum=0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:17,24:41:99:721,0,560
2    54122956    rs698856    A    G    375.16    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=22.07;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:6,11:17:99:405,0,184
2    54122984    rs698857    C    T    241.35    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=21.94;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:3,8:11:90.38:271,0,90
2    54124901    rs80145461    T    C    315.57    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=16;Dels=0.0;FS=9.031;HRun=1;HaplotypeScore=0.9998;MQ=58.55;MQ0=0;MQRankSum=1.681;QD=19.72;ReadPosRankSum=1.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:6,10:16:99:346,0,154
2    54125258    rs805416    T    C    180.55    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.64;MQ0=0;MQRankSum=0.725;QD=10.03;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:11,7:18:99:211,0,364
2    54125495    rs805417    T    C    445.33    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.815;DB;DP=29;Dels=0.0;FS=6.805;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=-1.126;QD=15.36;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:14,15:29:99:475,0,366
2    54127041    rs805423    C    T    1145.90    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=2.377;DB;DP=88;Dels=0.0;FS=1.771;HRun=1;HaplotypeScore=1.5767;MQ=59.74;MQ0=0;MQRankSum=-0.344;QD=13.02;ReadPosRankSum=-0.71;SNPEFF_AMINO_ACID_CHANGE=Q1133;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_54127018_54127154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:46,42:88:99:1176,0,1245
2    54135429    rs805319    G    C    446.92    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.058;QD=20.31;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:8,14:22:99:477,0,227
2    54137136    rs2056650    A    G    984.46    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.148;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=16.41;ReadPosRankSum=1.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:25,35:60:99:1014,0,859
2    54148331    rs805330    C    A    128.11    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.369;QD=7.54;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:12,5:17:99:158,0,433
2    54150079    rs3213774    A    T    277.52    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.56;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.63;QD=11.1;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:14,11:25:99:308,0,505
2    54152927    rs2302879    T    C    454.57    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.889;DB;DP=25;Dels=0.0;FS=6.761;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=18.18;ReadPosRankSum=1.451;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:11,14:25:99:485,0,373
2    54155240    rs805349    A    G    818.47    PASS    AB=0.302;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.636;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=19.03;ReadPosRankSum=-1.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475694    GT:AD:DP:GQ:PL    0/1:13,30:43:99:848,0,384
2    54158957    rs805352    C    T    354.41    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=41;Dels=0.0;FS=5.818;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.0;QD=8.64;ReadPosRankSum=0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475694    GT:AD:DP:GQ:PL    0/1:27,14:41:99:384,0,799
2    54161885    rs805357    G    T    175.71    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.728;QD=7.03;ReadPosRankSum=-2.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481518    GT:AD:DP:GQ:PL    0/1:17,8:25:99:206,0,598
2    54164848    rs805360    G    T    88.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.35;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:8,4:12:99:118,0,260
2    54175763    rs2302880    T    C    180.30    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=11.27;ReadPosRankSum=-2.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404125    GT:AD:DP:GQ:PL    0/1:8,7:16:99:210,0,290
2    54362437    rs2357954    T    C    168.28    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=15.3;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACYP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303536    GT:AD:DP:GQ:PL    0/1:5,6:11:99:198,0,175
2    54482964    rs843704    C    T    736.71    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.87;MQ0=0;MQRankSum=0.41;QD=17.97;ReadPosRankSum=0.172;SNPEFF_AMINO_ACID_CHANGE=G109S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_54480315_54483409;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317802    GT:AD:DP:GQ:PL    0/1:17,24:41:99:767,0,475
2    54483443    rs843703    T    C    108.12    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACYP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303536    GT:AD:DP:GQ:PL    0/1:3,4:7:98.21:138,0,98
2    54562343    rs13000039    G    A    41.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398634    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:71,0,33
2    54571147    rs3813463    C    T    73.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=12.2;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398634    GT:AD:DP:GQ:PL    0/1:2,4:6:70.60:103,0,71
2    54587596    rs2280718    C    T    555.56    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.584;DB;DP=36;Dels=0.0;FS=1.331;HRun=1;HaplotypeScore=0.9734;MQ=59.36;MQ0=0;MQRankSum=1.458;QD=15.43;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=P196L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_54587340_54587644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447328    GT:AD:DP:GQ:PL    0/1:17,19:36:99:586,0,534
2    54587659    rs13184    G    C    348.14    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=34;Dels=0.0;FS=3.269;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.624;QD=10.24;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=R275T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_54587340_54588714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398634    GT:AD:DP:GQ:PL    0/1:19,15:34:99:378,0,625
2    54608883    rs11677654    C    A    193.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=12.89;ReadPosRankSum=2.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405749    GT:AD:DP:GQ:PL    0/1:5,10:15:99:223,0,130
2    55040426    rs2631840    A    G    3175.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.72;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=P85;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55040369_55040528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3208,250,0
2    55043798    rs2578711    G    C    38.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.72;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:2,3:5:68.61:69,0,73
2    55071493    rs11680118    C    T    121.36    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.27;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:151,0,25
2    55077061    rs12713278    A    G    256.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.814;DB;DP=30;Dels=0.0;FS=1.938;HRun=1;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=-0.638;QD=8.55;ReadPosRankSum=1.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:20,10:30:99:286,0,691
2    55077573    rs13020090    C    G    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
2    55077579    rs12713279    G    A    90.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
2    55093657    rs2033821    G    A    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    55093842    rs1961245    G    A    357.94    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.068;DB;DP=35;Dels=0.0;FS=3.22;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=10.23;ReadPosRankSum=-1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:23,12:35:99:388,0,699
2    55121930    rs998230    C    G    440.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:474,36,0
2    55121996    rs2165007    G    C    454.60    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=21.65;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:5,16:21:99:485,0,146
2    55155672    rs10164886    A    G    293.93    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.005;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=13.36;ReadPosRankSum=1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:8,14:22:99:324,0,241
2    55176112    rs13394146    C    T    183.97    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.278;QD=16.72;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:4,7:11:99:214,0,117
2    55180965    rs4671998    G    A    165.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
2    55181351    rs4671999    T    C    167.71    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.271;QD=10.48;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:5,9:15:99:198,0,153
2    55181382    rs4672001    G    A    139.47    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=53.36;MQ0=0;MQRankSum=0.717;QD=12.68;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:6,5:11:99:169,0,124
2    55186229    rs12623902    T    C    123.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=12.35;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:5,5:10:99:153,0,154
2    55186394    rs17346629    A    C    765.22    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.834;DB;DP=49;Dels=0.0;FS=2.41;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.78;QD=15.62;ReadPosRankSum=0.295;SNPEFF_AMINO_ACID_CHANGE=R1617;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55186241_55186398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:20,29:49:99:795,0,645
2    55187295    rs35279349    G    A    36.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=6.04;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:4,2:6:66.24:66,0,98
2    55187297    rs67694848    A    AG    245.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=20.3183;IndelType=I;MQ=61.53;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
2    55189895    rs74963522    G    A    74.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=10.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:3,4:7:99:105,0,102
2    55189931    rs3796007    G    A    32.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.57;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:3,2:5:62.85:63,0,93
2    55195029    rs13027633    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317610    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    55195220    rs13033042    G    A    845.46    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=49;Dels=0.0;FS=1.328;HRun=0;HaplotypeScore=3.4487;MQ=60.0;MQ0=0;MQRankSum=0.104;QD=17.25;ReadPosRankSum=-0.582;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317610    GT:AD:DP:GQ:PL    0/1:22,27:49:99:875,0,551
2    55195330    rs11684017    A    G    886.34    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.895;DB;DP=53;Dels=0.0;FS=10.329;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.522;QD=16.72;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=A1888;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55195264_55195417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:21,32:53:99:916,0,637
2    55200800    rs2255112    T    G    531.47    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.243;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.387;QD=16.11;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    0/1:16,17:33:99:561,0,509
2    55201038    rs2255026    C    T    954.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EML6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356458    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:987,72,0
2    55214618    rs2580769    A    C    1339.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317610    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1373,102,0
2    55214912    rs2580770    C    G    85.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317610    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    55254165    rs11677099    T    A    1032.69    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=60;Dels=0.0;FS=7.597;HRun=1;HaplotypeScore=0.5784;MQ=59.62;MQ0=0;MQRankSum=1.708;QD=17.21;ReadPosRankSum=0.515;SNPEFF_AMINO_ACID_CHANGE=D125V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55252222_55254363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354474    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1063,0,841
2    55404794    rs14026    G    A    1024.43    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.932;DB;DP=66;Dels=0.0;FS=0.91;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.648;QD=15.52;ReadPosRankSum=0.892;SNPEFF_AMINO_ACID_CHANGE=A381V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55404738_55404917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406076    GT:AD:DP:GQ:PL    0/1:32,34:66:99:1054,0,1000
2    55404883    rs13032294    T    C    826.57    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.357;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.762;QD=15.03;ReadPosRankSum=-2.267;SNPEFF_AMINO_ACID_CHANGE=Q24;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55404738_55404917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406437    GT:AD:DP:GQ:PL    0/1:26,29:55:99:857,0,858
2    55407610    rs13003020    T    A    257.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.317;DB;DP=30;Dels=0.0;FS=2.277;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.206;QD=8.57;ReadPosRankSum=0.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401408    GT:AD:DP:GQ:PL    0/1:20,10:30:99:287,0,695
2    55407644    rs114931154    A    T    755.27    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.562;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.629;QD=18.42;ReadPosRankSum=0.454;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000487320    GT:AD:DP:GQ:PL    0/1:15,25:41:99:785,0,386
2    55407754    rs6716066    C    T    2115.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.47;SNPEFF_AMINO_ACID_CHANGE=V304I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55407646_55407848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406076    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2148,160,0
2    55407935    rs10183953    G    A    359.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401408    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:392,30,0
2    55439667    rs6723870    C    G    208    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401408    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
2    55439963    rs2118283    C    A    1035.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401408    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1068,78,0
2    55449256    rs1437389    G    A    283.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403506    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:316,24,0
2    55449318    rs4435493    T    C    362.84    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.0;FS=3.067;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.837;QD=15.78;ReadPosRankSum=1.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403506    GT:AD:DP:GQ:PL    0/1:10,13:23:99:393,0,311
2    55449464    rs17852670    T    C    1001.33    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.601;DB;DP=62;Dels=0.0;FS=11.418;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.191;QD=16.15;ReadPosRankSum=0.078;SNPEFF_AMINO_ACID_CHANGE=Q28;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55449371_55449629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401408    GT:AD:DP:GQ:PL    0/1:28,34:62:99:1031,0,853
2    55459890    rs35302335    G    T    175.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=14.59;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    0/1:6,6:12:99:205,0,196
2    55460017    rs2028139    C    T    198.86    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.58;QD=19.89;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    0/1:3,7:10:58.49:229,0,58
2    55460605    rs6737227    A    T    224.51    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.742;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=13.21;ReadPosRankSum=-0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    0/1:8,9:17:99:255,0,231
2    55461823    rs2576722    T    A    217.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
2    55464700    rs74410951    T    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418823    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    55470115    rs11357    C    T    591.62    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.72;MQ0=0;MQRankSum=0.454;QD=12.33;ReadPosRankSum=-0.351;SNPEFF_AMINO_ACID_CHANGE=V234I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55470076_55470216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418823    GT:AD:DP:GQ:PL    0/1:25,23:48:99:622,0,857
2    55471407    rs2589083    T    C    180.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:213,18,0
2    55473371    rs2576724    A    G    195.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.802;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=56.62;MQ0=0;MQRankSum=-2.239;QD=9.29;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    0/1:12,9:21:99:225,0,394
2    55473386    rs3833559    CAT    C    323.43    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=3.611;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=104.7625;IndelType=D;MQ=57.29;MQ0=0;MQRankSum=-1.294;QD=12.44;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    0/1:17,9:26:99:362,0,959
2    55473681    rs2589081    A    C    564.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:597,45,0
2    55489629    rs2589093    T    C    224.41    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.723;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=53.57;MQ0=0;MQRankSum=0.088;QD=6.6;ReadPosRankSum=-1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366137    GT:AD:DP:GQ:PL    0/1:20,14:34:99:254,0,512
2    55490788    rs1134722    T    C    422.37    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=36;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.156;QD=11.73;ReadPosRankSum=0.155;SNPEFF_AMINO_ACID_CHANGE=L69;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55490776_55491001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    0/1:19,17:36:99:452,0,627
2    55490819    rs1056445    G    T    835.65    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.142;DB;DP=51;Dels=0.0;FS=10.861;HRun=1;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;MQRankSum=0.341;QD=16.39;ReadPosRankSum=-0.238;SNPEFF_AMINO_ACID_CHANGE=T59N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55490776_55491001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263629    GT:AD:DP:GQ:PL    0/1:25,26:51:99:866,0,741
2    55518742    rs2249856    T    C    154.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426576    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:187,15,0
2    55519148    rs59122515    C    A    79.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.799;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426576    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:112,12,0
2    55522422    rs2589110    A    G    3477.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=37.39;SNPEFF_AMINO_ACID_CHANGE=V1129;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55521309_55523192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426576    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3478,256,0
2    55523308    rs140112269    C    CAA    444.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=160.3117;IndelType=I;MQ=57.19;MQ0=0;QD=24.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:3,13:18:45.69:486,46,0
2    55526751    rs2589116    A    G    258.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
2    55527108    rs1545121    G    A    1976.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2010,150,0
2    55528257    rs2576699    A    C    500.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:534,39,0
2    55528514    rs2589117    A    G    218.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
2    55528855    rs2920973    A    T    167.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:201,18,0
2    55566485    rs72447857    TAAC    T    263.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=72.1786;IndelType=D;MQ=41.96;MQ0=0;QD=43.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:1,5:6:18.06:305,18,0
2    55566531    rs12621734    A    C    372.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.9683;MQ=48.43;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:406,33,0
2    55566538    rs71821845    CTATT    C    597.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=141.8363;IndelType=D;MQ=49.26;MQ0=0;QD=45.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:2,11:13:36.12:640,36,0
2    55571085    rs2589077    C    T    174.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
2    55576634    rs2589090    C    T    1035.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1068,78,0
2    55582601    rs5831355    T    TTTGACACA    1911.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=93.3821;IndelType=I;MQ=33.34;MQ0=0;QD=127.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430086    GT:AD:DP:GQ:PL    1/1:4,9:15:45.15:1953,45,0
2    55582684    rs1437394    A    T    1694.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.669;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.39;MQ0=0;MQRankSum=-0.346;QD=30.25;ReadPosRankSum=-0.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430086    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1727,104,0
2    55589364    rs13019339    G    A    512.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:545,42,0
2    55589434    rs3111412    T    A    1094.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,39:39:93.28:1128,93,0
2    55599810    rs10496042    C    T    174.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263630    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
2    55747471    rs76100373    A    G    420.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.345;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=15.03;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339012    GT:AD:DP:GQ:PL    0/1:14,14:28:99:451,0,451
2    55750721    rs41281507    A    G    71.29    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=14.26;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339012    GT:AD:DP:GQ:PL    0/1:1,4:5:30.61:101,0,31
2    55760940    rs4671248    G    T    539.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=38.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339012    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:572,42,0
2    55762942    .    C    A    55.06    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.164;QD=3.67;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=L194I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55762848_55763047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC104;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403007    GT:AD:DP:GQ:PL    0/1:10,5:15:85.05:85,0,356
2    55762957    rs3762513    C    T    77.71    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.979;QD=5.18;ReadPosRankSum=-1.11;SNPEFF_AMINO_ACID_CHANGE=H199Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55762848_55763047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC104;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403007    GT:AD:DP:GQ:PL    0/1:11,4:15:99:108,0,408
2    55764754    rs145376528    AATATGAATAC    A    977.84    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=4.308;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=244.3392;IndelType=D;MQ=50.46;MQ0=0;MQRankSum=-2.872;QD=36.22;ReadPosRankSum=-0.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403007    GT:AD:DP:GQ:PL    0/1:14,13:27:99:1017,0,1763
2    55771050    rs3816489    C    G    1432.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.073;DB;DP=112;Dels=0.0;FS=5.07;HRun=1;HaplotypeScore=1.612;MQ=59.79;MQ0=0;MQRankSum=0.232;QD=12.79;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406691    GT:AD:DP:GQ:PL    0/1:64,48:112:99:1462,0,2017
2    55771161    rs1045910    A    G    2865.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=59.43;MQ0=0;QD=35.38;SNPEFF_AMINO_ACID_CHANGE=D214G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55771161_55771210;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC104;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407816    GT:AD:DP:GQ:PL    1/1:0,80:81:99:2899,217,0
2    55785692    rs4671249    T    C    34.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
2    55795557    rs56286204    C    T    594.25    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.399;DB;DP=41;Dels=0.0;FS=1.724;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=14.49;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    0/1:22,19:41:99:624,0,686
2    55800992    rs4671250    G    T    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
2    55805440    rs2903704    T    C    299.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.94;SNPEFF_AMINO_ACID_CHANGE=I503V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55805383_55805478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345102    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:332,27,0
2    55808578    rs75273644    G    C    163.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.068;QD=11.66;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    0/1:7,7:14:99:193,0,245
2    55808969    rs1975486    C    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    55812061    rs4312532    A    G    298.24    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.055;QD=17.54;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    0/1:6,11:17:99:328,0,189
2    55812073    rs7594279    T    G    160.57    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=8.45;ReadPosRankSum=1.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    0/1:12,7:19:99:191,0,449
2    55831415    rs2627763    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    55844105    rs782593    C    T    164.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
2    55844209    .    C    G    364.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.924;DP=36;Dels=0.0;FS=2.21;HRun=0;HaplotypeScore=1.8313;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=10.13;ReadPosRankSum=-1.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272313    GT:AD:DP:GQ:PL    0/1:16,20:36:99:395,0,553
2    55844445    rs782594    T    C    421.59    PASS    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=19;Dels=0.0;FS=2.805;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.54;QD=22.19;ReadPosRankSum=1.009;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477749    GT:AD:DP:GQ:PL    0/1:4,15:19:91.89:452,0,92
2    55863360    rs35916020    T    TA    123.87    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=22;FS=2.197;HRun=11;HaplotypeScore=49.44;IndelType=I;MQ=59.44;MQ0=0;MQRankSum=-2.098;QD=5.63;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481066    GT:AD:DP:GQ:PL    0/1:14,7:22:99:163,0,165
2    55867938    rs34679603    A    G    156.73    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=12.06;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    0/1:7,6:13:99:187,0,232
2    55873215    rs2627777    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
2    55883317    rs2627765    G    T    457.45    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.69;DB;DP=46;Dels=0.0;FS=2.588;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=1.407;QD=9.94;ReadPosRankSum=0.686;SNPEFF_AMINO_ACID_CHANGE=R464;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55883266_55883355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    0/1:28,18:46:99:487,0,814
2    55889062    rs782604    G    A    1014.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1047,75,0
2    55894247    rs782637    T    C    498.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.677;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=60.0;MQ0=0;MQRankSum=0.886;QD=15.59;ReadPosRankSum=0.622;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    0/1:16,16:32:99:529,0,518
2    55899228    rs782631    A    T    2135.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2169,168,0
2    55900231    .    G    GA    435.42    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.981;DP=52;FS=1.648;HRun=10;HaplotypeScore=190.7124;IndelType=I;MQ=58.74;MQ0=0;MQRankSum=-0.735;QD=8.37;ReadPosRankSum=-0.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    0/1:33,19:52:99:474,0,465
2    55900283    rs782629    A    G    245.45    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=3.665;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;MQRankSum=0.039;QD=11.69;ReadPosRankSum=0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    0/1:13,8:21:99:275,0,349
2    55912120    rs782572    T    C    572.65    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=46;Dels=0.0;FS=2.816;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.498;QD=12.45;ReadPosRankSum=-0.971;SNPEFF_AMINO_ACID_CHANGE=I121V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_55912078_55912183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    0/1:25,21:46:99:603,0,760
2    55914621    rs809732    T    C    249.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.096;QD=15.62;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447944    GT:AD:DP:GQ:PL    0/1:8,8:16:99:280,0,220
2    55921116    rs782584    C    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260604    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    56102019    rs55778215    T    C    351.58    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=23;Dels=0.0;FS=1.935;HRun=2;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.462;QD=15.29;ReadPosRankSum=2.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFEMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355426    GT:AD:DP:GQ:PL    0/1:11,12:23:99:382,0,308
2    56102061    rs139806658    GA    G    301.47    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=4.133;DB;DP=36;FS=5.871;HRun=10;HaplotypeScore=132.6765;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=0.827;QD=8.37;ReadPosRankSum=-0.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFEMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355426    GT:AD:DP:GQ:PL    0/1:19,17:36:99:341,0,462
2    56102281    rs55867135    T    C    140.11    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=17.51;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFEMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355426    GT:AD:DP:GQ:PL    0/1:2,6:8:54.59:170,0,55
2    56103682    rs17047287    T    C    640    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.879;DB;DP=34;Dels=0.0;FS=3.554;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.451;QD=18.82;ReadPosRankSum=1.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFEMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355426    GT:AD:DP:GQ:PL    0/1:15,19:34:99:670,0,485
2    56108689    rs11680866    G    A    401.66    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=25;Dels=0.0;FS=5.528;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.142;QD=16.07;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFEMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355426    GT:AD:DP:GQ:PL    0/1:9,16:25:99:432,0,300
2    56108882    rs3748959    T    C    516.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.132;DB;DP=54;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=1.558;QD=9.56;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFEMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355426    GT:AD:DP:GQ:PL    0/1:30,24:54:99:546,0,963
2    56149475    rs2277886    C    G    601.78    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.4;MQ0=0;MQRankSum=-0.496;QD=14.68;ReadPosRankSum=0.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFEMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424207    GT:AD:DP:GQ:PL    0/1:18,22:40:99:632,0,515
2    56216052    rs10865292    G    A    3809.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3643;MQ=59.59;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR216A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385063    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3810,289,0
2    56411817    rs35587531    C    T    279.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_AMINO_ACID_CHANGE=P20S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_56411258_56412035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC85A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407595    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:313,24,0
2    56611543    rs77072758    C    CAAG    648.42    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.108;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=111.2353;IndelType=I;MQ=58.8;MQ0=0;MQRankSum=-0.055;QD=18.53;ReadPosRankSum=-1.013;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC85A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407595    GT:AD:DP:GQ:PL    0/1:23,12:35:99:687,0,829
2    56611725    rs11902680    C    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC85A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407595    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    58350504    rs7558007    A    G    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.99;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340157    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,148
2    58373754    rs185912980    G    A    135.59    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=22.6;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340157    GT:AD:DP:GQ:PL    0/1:1,5:6:24.95:166,0,25
2    58388696    rs848291    A    G    1372.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=S210;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_58388657_58388773;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000403676    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1405,105,0
2    58389969    rs149412402    G    C    674.68    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.763;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.224;QD=12.05;ReadPosRankSum=-0.314;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417361    GT:AD:DP:GQ:PL    0/1:31,25:56:99:705,0,914
2    58392789    rs848288    T    C    1278.65    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=67.6556;MQ=56.11;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233741    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1312,99,0
2    58392797    rs148383677    TTTA    T    1834.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=306.6888;IndelType=D;MQ=55.35;MQ0=0;QD=47.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233741    GT:AD:DP:GQ:PL    1/1:1,38:39:99:1877,111,0
2    58453843    .    G    GA    481.43    PASS    AC=2;AF=1.00;AN=2;DP=18;FS=0.0;HRun=12;HaplotypeScore=47.5424;IndelType=I;MQ=59.32;MQ0=0;QD=26.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233741    GT:AD:DP:GQ:PL    1/1:0,18:18:54.08:523,54,0
2    58688578    .    C    G    997.81    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.315;DP=88;Dels=0.0;FS=0.877;HRun=0;HaplotypeScore=2.8256;MQ=56.86;MQ0=0;MQRankSum=1.147;QD=11.34;ReadPosRankSum=-0.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007092.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422723    GT:AD:DP:GQ:PL    0/1:53,35:88:99:1028,0,1645
2    58688907    rs2075171    G    A    2179.44    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=4.543;DB;DP=150;Dels=0.0;FS=3.971;HRun=0;HaplotypeScore=2.6756;MQ=59.92;MQ0=0;MQRankSum=-1.325;QD=14.53;ReadPosRankSum=1.171;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007092.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422723    GT:AD:DP:GQ:PL    0/1:79,71:150:99:2209,0,2320
2    59482217    rs10690827    T    TGACTC    878.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=41.1025;IndelType=I;MQ=49.89;MQ0=1;QD=73.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007131.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409590    GT:AD:DP:GQ:PL    1/1:2,10:11:30.10:920,30,0
2    59504776    rs1558596    A    G    949.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.57;MQ0=0;QD=33.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007131.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409590    GT:AD:DP:GQ:PL    1/1:0,28:28:84.22:983,84,0
2    60687959    rs7569946    A    G    584    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DB;DP=37;Dels=0.0;FS=7.182;HRun=0;HaplotypeScore=1.9467;MQ=56.81;MQ0=0;MQRankSum=1.112;QD=15.78;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=S365;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_60687817_60688879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537768    GT:AD:DP:GQ:PL    0/1:17,20:37:99:614,0,508
2    60689522    rs61748090    G    A    454.63    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.42;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.619;QD=9.47;ReadPosRankSum=0.686;SNPEFF_AMINO_ACID_CHANGE=C141;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_60687409_60689559;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358510    GT:AD:DP:GQ:PL    0/1:29,18:48:99:485,0,836
2    60768978    rs2665668    G    A    425.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409351    GT:AD:DP:GQ:PL    1/1:0,13:13:36.08:459,36,0
2    60997770    rs10187671    T    A    139.68    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.296;QD=13.97;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238714    GT:AD:DP:GQ:PL    0/1:3,7:10:57.70:170,0,58
2    61007782    rs10496089    A    G    353.60    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.626;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.088;QD=16.07;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238714    GT:AD:DP:GQ:PL    0/1:10,12:22:99:384,0,344
2    61008036    rs3845814    C    T    204.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238714    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
2    61009909    rs10197672    C    T    316.15    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=25;Dels=0.0;FS=2.048;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=0.646;QD=12.65;ReadPosRankSum=0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238714    GT:AD:DP:GQ:PL    0/1:11,14:25:99:346,0,245
2    61018788    rs11695223    C    T    258.13    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=15.18;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238714    GT:AD:DP:GQ:PL    0/1:8,9:17:99:288,0,279
2    61021349    rs11125855    A    G    509.92    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=1.974;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=23.18;ReadPosRankSum=0.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470208    GT:AD:DP:GQ:PL    0/1:7,15:22:99:540,0,221
2    61121492    rs842644    G    A    1567.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.531;MQ=59.48;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295025    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1600,117,0
2    61175002    .    G    A    67.03    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.783;DP=17;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=6.717;MQ=46.25;MQ0=0;MQRankSum=-3.413;QD=3.94;ReadPosRankSum=3.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316752    GT:AD:DP:GQ:PL    0/1:8,9:17:97.03:97,0,247
2    61175040    .    C    A    31.04    QDFilter2    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.463;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.8069;MQ=51.06;MQ0=0;MQRankSum=-3.09;QD=1.24;ReadPosRankSum=-2.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316752    GT:AD:DP:GQ:PL    0/1:17,8:25:61.03:61,0,617
2    61175312    rs12479056    T    C    1800.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=30.52;SNPEFF_AMINO_ACID_CHANGE=K439;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_61175178_61175320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316752    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1833,144,0
2    61187478    .    C    CA    111.90    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DP=38;FS=0.0;HRun=17;HaplotypeScore=332.7581;IndelType=I;MQ=51.83;MQ0=0;MQRankSum=-2.623;QD=2.94;ReadPosRankSum=-1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316752    GT:AD:DP:GQ:PL    0/1:20,8:38:98.92:151,0,99
2    61235855    rs1182688    C    A    819.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398658    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:853,63,0
2    61304002    rs1729657    A    G    710.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.286;DB;DP=22;Dels=0.0;FS=5.855;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.057;QD=32.31;ReadPosRankSum=2.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1841;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483700    GT:AD:DP:GQ:PL    1/1:2,20:22:15.43:744,15,0
2    61304271    rs1729659    A    G    1937.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.6;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=K216;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_61304055_61304293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1841;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295031    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1970,156,0
2    61308517    rs1177295    A    G    2563.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.02;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1841;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295031    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2596,208,0
2    61336523    rs72809469    T    C    1344.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.11;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1841;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295031    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1378,108,0
2    61344858    rs72809474    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1841;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295031    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    61349446    rs1177284    G    A    166.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1841;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356719    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
2    61389965    .    G    T    332.72    MQFilter40    AB=0.16;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.784;DP=25;Dels=0.0;FS=6.99;HRun=3;HaplotypeScore=11.6779;MQ=37.32;MQ0=0;MQRankSum=-2.602;QD=13.31;ReadPosRankSum=2.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426997    GT:AD:DP:GQ:PL    0/1:4,21:25:69.92:363,0,70
2    61391305    rs1729662    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA1841;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398622    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:84,6,0
2    61406438    rs17006750    A    G    111.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357022    GT:AD:DP:GQ:PL    0/1:3,4:7:55.77:142,0,56
2    61412559    rs777585    C    T    2347.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=36.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463681    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2381,175,0
2    61413723    rs1809028    A    G    1425.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487904    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1459,114,0
2    61415492    rs14170    A    G    673.11    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.398;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=1.429;QD=13.2;ReadPosRankSum=1.183;SNPEFF_AMINO_ACID_CHANGE=A3227;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_61414591_61415844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398569    GT:AD:DP:GQ:PL    0/1:28,23:51:99:703,0,948
2    61416366    rs113183256    G    A    34.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9092;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=4.37;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357022    GT:AD:DP:GQ:PL    0/1:4,3:8:64.93:65,0,141
2    61417617    rs777591    A    G    998.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357022    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1032,75,0
2    61435847    rs4671397    G    A    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472689    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
2    61450454    rs2123111    A    G    586.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453734    GT:AD:DP:GQ:PL    1/1:0,20:20:48.13:620,48,0
2    61456608    .    AAAC    A    4467.31    PASS    AC=2;AF=1.00;AN=2;DP=168;FS=0.0;HRun=0;HaplotypeScore=1383.6165;IndelType=D;MQ=33.66;MQ0=0;QD=26.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:162,5:168:99:4467,474,0
2    61456610    rs71398609    AC    A    4719.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=164;FS=0.0;HRun=1;HaplotypeScore=1296.9161;IndelType=D;MQ=33.52;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:138,18:164:99:4720,475,0
2    61456624    .    C    A    60.63    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=158;Dels=0.05;FS=0.0;HRun=12;HaplotypeScore=144.9369;MQ=35.16;MQ0=0;QD=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:68,90:158:9.02:93,9,0
2    61483548    rs72811482    A    T    456.46    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=29;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.153;QD=15.74;ReadPosRankSum=-0.241;SNPEFF_AMINO_ACID_CHANGE=H1912Q;SNPEFF_CODON_CHANGE=caT/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_61483519_61483613;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    0/1:13,16:29:99:486,0,348
2    61507588    .    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    61510709    rs67763106    TGAGTGA    T    944.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=149.3964;IndelType=D;MQ=47.01;MQ0=0;QD=41.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:7,16:23:48.16:987,48,0
2    61522123    rs13014347    T    C    1447.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=E1322;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_61522084_61522167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1480,111,0
2    61538613    .    G    GAAAA    1405.40    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=3;HaplotypeScore=235.2779;IndelType=I;MQ=36.64;MQ0=0;QD=63.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:12,10:22:66.11:1447,66,0
2    61538615    rs67180224    G    GAAAAA    1754.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.103;DB;DP=23;FS=0.0;HRun=3;HaplotypeScore=217.6605;IndelType=I;MQ=37.96;MQ0=0;MQRankSum=-1.419;QD=76.27;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:13,10:23:60.19:1796,60,0
2    61552484    rs2593624    T    A    517.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=25.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:1,19:20:48.14:551,48,0
2    61558615    rs56399248    T    G    200.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
2    61575308    rs6722430    A    G    1831.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=M509T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_61575005_61575615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1864,141,0
2    61576517    rs811378    G    A    438.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:471,36,0
2    61577435    rs2166720    T    C    2358.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=A337;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_61577395_61577524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2392,184,0
2    61577949    rs811871    C    T    762.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:796,60,0
2    61605379    rs10196146    C    A    346.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:379,30,0
2    61605614    rs10208769    T    A    1424.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.391;DB;DP=41;Dels=0.0;FS=6.351;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=34.75;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:2,39:41:69.60:1458,70,0
2    61607510    rs988911    G    A    406.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263989    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:440,33,0
2    61709349    rs9679557    C    A    341.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461407    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:375,27,0
2    61709747    rs11360652    GT    G    236.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=12;HaplotypeScore=46.1885;IndelType=D;MQ=61.64;MQ0=0;QD=18.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461407    GT:AD:DP:GQ:PL    1/1:1,12:13:35.84:278,36,0
2    61711440    rs113311003    G    A    90.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494468    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    61722519    rs74392163    G    GA    945.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=5;HaplotypeScore=48.8214;IndelType=I;MQ=60.0;MQ0=0;QD=37.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437159    GT:AD:DP:GQ:PL    1/1:0,25:25:75.24:987,75,0
2    61722904    rs12713437    C    T    253.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437159    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
2    61729258    rs2305155    A    G    634.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468259    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:668,51,0
2    61729268    rs2305156    T    C    745.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468259    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:778,57,0
2    61729641    rs7591345    T    A    30.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401558    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
2    61729642    rs78621754    C    A    30.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=10.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401558    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:62,6,0
2    61749690    rs3732171    C    T    343.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420673    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:377,27,0
2    61749716    rs3732170    C    T    392.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420673    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:425,30,0
2    61761169    rs1446532    G    A    239.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_61760907_61761413;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420673    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:272,21,0
2    62053878    rs11392751    G    GA    209.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=8;HaplotypeScore=11.3022;IndelType=I;MQ=61.78;MQ0=0;QD=34.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478494    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
2    62063093    rs11299120    TA    T    425.03    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=97;FS=0.0;HRun=17;HaplotypeScore=531.3456;IndelType=D;MQ=55.64;MQ0=0;MQRankSum=-0.141;QD=4.38;ReadPosRankSum=3.419;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307507    GT:AD:DP:GQ:PL    0/1:34,56:97:99:464,0,105
2    62065525    rs1548322    A    G    597.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5779;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404929    GT:AD:DP:GQ:PL    1/1:0,20:20:54.15:631,54,0
2    62066927    rs4672457    A    G    1187.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=C404;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_62066556_62067716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM161A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404929    GT:AD:DP:GQ:PL    1/1:0,34:34:96.29:1221,96,0
2    62069528    rs11125896    C    T    570.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404929    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:603,45,0
2    62081012    rs4270331    A    C    1487.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=A55;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_62080994_62081188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM161A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404929    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1520,117,0
2    62081217    rs1881616    A    G    476.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307507    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:510,39,0
2    62095534    rs35906450    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461540    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    62095994    rs4672463    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394440    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    62104343    rs7571143    C    T    279.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394440    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
2    62107376    rs5831625    T    TC    2611.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=130.6442;IndelType=I;MQ=61.6;MQ0=0;QD=43.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394440    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2654,178,0
2    62107632    rs2272429    G    A    830.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394440    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:864,66,0
2    62112222    rs35876878    G    GA    668.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=8;HaplotypeScore=212.4424;IndelType=I;MQ=64.6;MQ0=0;QD=20.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461370    GT:AD:DP:GQ:PL    1/1:9,24:33:74.85:710,75,0
2    62112222    rs67059162    G    A    32.81    HaplotypeScoreFilter13;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=18.55;MQ=65.4;MQ0=0;QD=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461370    GT:AD:DP:GQ:PL    1/1:0,31:32:6.02:64,6,0
2    62362995    rs9096    T    C    563.59    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.664;DB;DP=57;Dels=0.0;FS=5.557;HRun=0;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=9.89;ReadPosRankSum=0.516;SNPEFF_AMINO_ACID_CHANGE=*6R;SNPEFF_CODON_CHANGE=Tga/Cga;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_2_62362980_62363114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COMMD1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000444166    GT:AD:DP:GQ:PL    0/1:34,23:57:99:594,0,1036
2    62373915    rs9752887    T    C    575.04    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.202;DB;DP=113;Dels=0.0;FS=11.958;HRun=0;HaplotypeScore=1.6828;MQ=40.11;MQ0=9;MQRankSum=-8.455;QD=5.04;ReadPosRankSum=-0.746;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COMMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444166    GT:AD:DP:GQ:PL    0/1:57,56:113:99:605,0,1787
2    62374457    rs112472291    T    TA    142.03    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DB;DP=43;FS=2.722;HRun=13;HaplotypeScore=162.3881;IndelType=I;MQ=47.99;MQ0=0;MQRankSum=0.63;QD=3.23;ReadPosRankSum=-1.443;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COMMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444166    GT:AD:DP:GQ:PL    0/1:33,10:43:99:181,0,356
2    62729674    rs4672527    T    C    709.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_AMINO_ACID_CHANGE=L72;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_62729572_62729685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335390    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:743,57,0
2    62729747    rs112634086    G    GA    1045.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=6;HaplotypeScore=68.7933;IndelType=I;MQ=60.36;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335390    GT:AD:DP:GQ:PL    1/1:2,28:30:87.28:1088,87,0
2    62730048    rs4672528    T    A    259.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335390    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
2    62733189    rs17854454    C    T    195.49    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DB;DP=18;Dels=0.0;FS=2.115;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=1.588;QD=10.86;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=G26S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_62733165_62733476;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335390    GT:AD:DP:GQ:PL    0/1:10,8:18:99:225,0,284
2    62733253    rs11676567    C    T    141.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=11.79;ReadPosRankSum=-0.869;SNPEFF_AMINO_ACID_CHANGE=P4;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_62733165_62733476;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335390    GT:AD:DP:GQ:PL    0/1:6,6:12:99:171,0,153
2    63170185    rs2539990    C    T    82.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263991    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    63176012    .    C    A    412.21    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.195;DP=32;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.8321;MQ=59.28;MQ0=0;MQRankSum=0.615;QD=12.88;ReadPosRankSum=-0.615;SNPEFF_AMINO_ACID_CHANGE=P677;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_63175395_63176297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354487    GT:AD:DP:GQ:PL    0/1:17,15:32:99:442,0,545
2    63380809    rs7595595    G    A    243.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDPCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272321    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
2    63401973    rs2421862    G    A    540.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.865;DB;DP=42;Dels=0.0;FS=1.345;HRun=4;HaplotypeScore=1.9903;MQ=60.0;MQ0=0;MQRankSum=0.039;QD=12.87;ReadPosRankSum=-0.848;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDPCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272321    GT:AD:DP:GQ:PL    0/1:21,21:42:99:571,0,639
2    63486429    rs992214    C    T    534.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=42;Dels=0.0;FS=8.568;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.089;QD=12.72;ReadPosRankSum=-0.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDPCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272321    GT:AD:DP:GQ:PL    0/1:24,18:42:99:564,0,854
2    63540523    rs1517402    A    T    228.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.103;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.313;QD=14.28;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDPCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272321    GT:AD:DP:GQ:PL    0/1:8,8:16:99:258,0,245
2    63605430    rs2292795    A    G    230.42    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.261;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=13.55;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDPCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272321    GT:AD:DP:GQ:PL    0/1:8,9:17:99:260,0,278
2    63720210    rs7563623    A    G    69.48    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.68;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDPCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272321    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,121
2    63816672    rs10469944    C    G    89.84    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=6.42;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233114    GT:AD:DP:GQ:PL    0/1:10,4:14:99:120,0,343
2    63822785    rs2305157    T    C    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442225    GT:AD:DP:GQ:PL    0/1:2,2:4:67.59:68,0,68
2    63826528    rs7606045    T    G    35.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.78;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436321    GT:AD:DP:GQ:PL    0/1:2,2:4:65.11:65,0,67
2    63833813    rs262473    G    T    70.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.17;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421012    GT:AD:DP:GQ:PL    0/1:2,3:5:63.16:101,0,63
2    63849491    rs262496    T    C    442.06    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.509;DB;DP=30;Dels=0.0;FS=3.382;HRun=0;HaplotypeScore=0.0;MQ=59.9;MQ0=0;MQRankSum=-0.673;QD=14.74;ReadPosRankSum=-0.998;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WDPCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467687    GT:AD:DP:GQ:PL    0/1:14,16:30:99:472,0,418
2    64085114    rs10183479    G    A    2471.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465515    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2504,193,0
2    64118158    rs11433092    T    TA    89.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=9;FS=0.0;HRun=12;HaplotypeScore=55.6776;IndelType=I;MQ=54.65;MQ0=0;MQRankSum=0.736;QD=9.98;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487469    GT:AD:DP:GQ:PL    0/1:3,6:9:3.88:128,0,4
2    64126775    rs78227932    C    A    359.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=13.82;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272322    GT:AD:DP:GQ:PL    0/1:13,13:26:99:389,0,443
2    64139901    rs2302809    A    T    338.45    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.49;MQ0=0;MQRankSum=-0.176;QD=15.38;ReadPosRankSum=1.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272322    GT:AD:DP:GQ:PL    0/1:10,12:22:99:368,0,323
2    64140301    rs10207847    A    T    229.78    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.448;QD=15.32;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272322    GT:AD:DP:GQ:PL    0/1:7,8:15:99:260,0,234
2    64143884    rs13027117    T    C    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272322    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    64174664    rs41291181    G    A    391.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.816;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.347;QD=19.56;ReadPosRankSum=-0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272322    GT:AD:DP:GQ:PL    0/1:8,12:20:99:421,0,281
2    64327544    rs329498    G    T    1124.64    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=4.783;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.46;MQ0=0;MQRankSum=0.865;QD=14.42;ReadPosRankSum=-0.135;SNPEFF_AMINO_ACID_CHANGE=T97;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_64327532_64327633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PELI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358912    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1155,0,1081
2    64327592    rs329497    T    C    1243.94    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.633;DB;DP=85;Dels=0.0;FS=5.533;HRun=0;HaplotypeScore=1.9203;MQ=59.51;MQ0=0;MQRankSum=-0.593;QD=14.63;ReadPosRankSum=0.98;SNPEFF_AMINO_ACID_CHANGE=L81;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_64327532_64327633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PELI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358912    GT:AD:DP:GQ:PL    0/1:42,43:85:99:1274,0,1190
2    64331815    rs71941695    CT    C    103.18    QDFilter2    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=65;FS=12.187;HRun=17;HaplotypeScore=336.2618;IndelType=D;MQ=54.26;MQ0=0;MQRankSum=2.323;QD=1.59;ReadPosRankSum=1.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PELI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468869    GT:AD:DP:GQ:PL    0/1:30,24:65:99:142,0,225
2    64335394    rs17753351    A    G    646.94    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.093;QD=11.55;ReadPosRankSum=-0.565;SNPEFF_AMINO_ACID_CHANGE=Y17;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_64335374_64335513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PELI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358912    GT:AD:DP:GQ:PL    0/1:30,26:56:99:677,0,846
2    64682364    rs3770741    A    C    404.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008074.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238875    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:437,33,0
2    65217089    rs7559202    G    C    257.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_AMINO_ACID_CHANGE=S104;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_65216535_65217304;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC1A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234256    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:290,21,0
2    65309988    rs1420183    T    C    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEP68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546106    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
2    65315880    rs1420184    G    C    875.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEP68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260569    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:909,69,0
2    65315903    rs1420185    G    A    652.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEP68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260569    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:686,54,0
2    65324902    rs6729273    T    C    74.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAB1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260638    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
2    65333300    rs10187798    A    G    148.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAB1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260638    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
2    65469623    .    A    G    145.22    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=13.2;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260641    GT:AD:DP:GQ:PL    0/1:5,6:11:97.80:175,0,98
2    65473930    rs58944514    AAAATTTTC    A    3300.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=334.8234;IndelType=D;MQ=34.52;MQ0=0;QD=80.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471552    GT:AD:DP:GQ:PL    1/1:0,41:38:99:3300,114,0
2    65478003    rs268853    C    T    171.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471552    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
2    65478371    rs7574628    T    A    286.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471552    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
2    65480681    rs113106233    TAAAAG    T    394.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=42.2149;IndelType=D;MQ=52.81;MQ0=0;QD=56.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260641    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:437,21,0
2    65481008    rs268871    A    C    1482.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260641    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1516,123,0
2    65488160    rs268861    A    G    34.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=65.19;MQ0=0;QD=17.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260641    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
2    65488238    rs5831745    T    TC    433.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=4;HaplotypeScore=24.9531;IndelType=I;MQ=61.78;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260641    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:475,36,0
2    65488538    rs268862    G    A    1829.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260641    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1863,138,0
2    65492486    rs4671647    C    T    128.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260641    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
2    65495570    rs55843720    A    C    91.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.88;MQ0=0;QD=11.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542850    GT:AD:DP:GQ:PL    1/1:0,8:8:14.97:124,15,0
2    65495571    rs60931828    T    C    91.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.88;MQ0=0;QD=11.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542850    GT:AD:DP:GQ:PL    1/1:0,8:8:14.97:124,15,0
2    65495573    rs113048830    A    AC    346.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=88.9313;IndelType=I;MQ=46.46;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542850    GT:AD:DP:GQ:PL    1/1:2,8:9:27.09:389,27,0
2    65495887    rs268875    G    A    2406.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.08;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542850    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2439,184,0
2    65496018    rs11424    C    G    366.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535303    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:400,30,0
2    65540905    rs8827    C    G    2318.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=A211;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_65540837_65541303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421087    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2351,184,0
2    65559027    rs2271198    A    G    119.77    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.464;QD=7.49;ReadPosRankSum=-1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426832    GT:AD:DP:GQ:PL    0/1:10,6:16:99:150,0,362
2    65604914    rs268120    A    G    135.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356388    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
2    65663936    rs11694714    C    T    118.48    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=11.85;ReadPosRankSum=-0.296;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356388    GT:AD:DP:GQ:PL    0/1:3,7:10:98.49:148,0,98
2    65664093    rs1437465    C    G    41.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.56;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
2    66794834    rs1000756    G    A    76.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.31;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475239    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:107,0,69
2    66798282    rs2861108    G    T    401.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450027    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:434,33,0
2    67630980    rs3770657    G    A    1374.90    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=2.558;DB;DP=77;Dels=0.0;FS=3.2;HRun=1;HaplotypeScore=0.9159;MQ=59.7;MQ0=0;MQRankSum=1.318;QD=17.86;ReadPosRankSum=0.801;SNPEFF_AMINO_ACID_CHANGE=S389N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_67630357_67632467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETAA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272342    GT:AD:DP:GQ:PL    0/1:32,45:77:99:1405,0,1030
2    67632125    rs3770655    C    T    394.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.276;DB;DP=36;Dels=0.0;FS=7.279;HRun=2;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.557;QD=10.96;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=P771S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_67630357_67632467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETAA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272342    GT:AD:DP:GQ:PL    0/1:20,16:36:99:424,0,664
2    67637196    rs1569    G    A    4574.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=35.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462772    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4574,340,0
2    68270068    rs10444    A    G    211.37    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.58;MQ0=0;MQRankSum=-2.662;QD=7.83;ReadPosRankSum=-0.553;SNPEFF_AMINO_ACID_CHANGE=S127P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_68268262_68270185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355848    GT:AD:DP:GQ:PL    0/1:17,10:27:99:241,0,456
2    68270258    rs10207196    C    T    203.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.54;MQ0=0;MQRankSum=-0.663;QD=14.56;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470189    GT:AD:DP:GQ:PL    0/1:7,7:14:99:234,0,242
2    68352515    rs6742154    A    C    2328.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.175;DB;DP=204;Dels=0.0;FS=0.518;HRun=1;HaplotypeScore=3.6564;MQ=59.66;MQ0=0;MQRankSum=0.602;QD=11.41;ReadPosRankSum=1.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295121    GT:AD:DP:GQ:PL    0/1:116,87:204:99:2359,0,3550
2    68358341    rs62145930    T    C    423.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=27;Dels=0.0;FS=2.551;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.903;QD=15.68;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406334    GT:AD:DP:GQ:PL    0/1:12,15:27:99:453,0,351
2    68358653    rs17035004    T    C    46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=5.75;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406245    GT:AD:DP:GQ:PL    0/1:5,3:8:76:76,0,181
2    68364478    rs13009282    T    C    561.58    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.033;DB;DP=43;Dels=0.0;FS=2.623;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.061;QD=13.06;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=M140V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_68364431_68364565;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR92;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406245    GT:AD:DP:GQ:PL    0/1:20,23:43:99:592,0,632
2    68385097    rs2044693    A    G    933.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=28.29;SNPEFF_AMINO_ACID_CHANGE=R11G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_68384976_68385273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263657    GT:AD:DP:GQ:PL    1/1:0,33:33:78.20:966,78,0
2    68388823    rs1137930    A    G    272.50    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=19;Dels=0.0;FS=2.197;HRun=1;HaplotypeScore=0.9159;MQ=58.78;MQ0=0;MQRankSum=-0.133;QD=14.34;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=K122;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_68388815_68388898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263657    GT:AD:DP:GQ:PL    0/1:9,10:19:99:302,0,229
2    68389481    rs3217588    CTT    C    733.29    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=3.654;DB;DP=36;FS=0.0;HRun=2;HaplotypeScore=121.1694;IndelType=D;MQ=59.56;MQ0=1;MQRankSum=-0.111;QD=19.82;ReadPosRankSum=-0.522;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430742    GT:AD:DP:GQ:PL    0/1:18,19:36:99:772,0,945
2    68389919    rs7606087    C    T    177.52    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=16.14;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430742    GT:AD:DP:GQ:PL    0/1:5,6:11:99:208,0,162
2    68402012    rs1060842    G    T    489.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234310    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:522,39,0
2    68407926    rs875    A    G    33.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.66;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263657    GT:AD:DP:GQ:PL    0/1:3,2:5:63.31:63,0,106
2    68413437    rs140773    G    GTTAA    524.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=29.0099;IndelType=I;MQ=48.82;MQ0=0;QD=65.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234310    GT:AD:DP:GQ:PL    1/1:1,6:8:24.08:567,24,0
2    68415563    rs11343435    CT    C    50.29    QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=0.716;DB;DP=34;FS=0.0;HRun=15;HaplotypeScore=190.6072;IndelType=D;MQ=58.26;MQ0=0;MQRankSum=0.596;QD=1.48;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234310    GT:AD:DP:GQ:PL    0/1:17,15:34:89.32:89,0,300
2    68415767    rs11692815    G    A    1696.51    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.009;DB;DP=117;Dels=0.0;FS=9.305;HRun=0;HaplotypeScore=2.9754;MQ=59.01;MQ0=0;MQRankSum=-0.888;QD=14.5;ReadPosRankSum=1.266;SNPEFF_AMINO_ACID_CHANGE=D23;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_68415646_68415822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP3R1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409377    GT:AD:DP:GQ:PL    0/1:63,54:117:99:1727,0,2117
2    68444143    rs141263920    TAC    T    142.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=108.0098;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=1.666;QD=11.91;ReadPosRankSum=-1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234310    GT:AD:DP:GQ:PL    0/1:6,5:12:25.10:182,0,25
2    68500221    rs6750368    A    G    593.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC017083.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408516    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:626,51,0
2    68500578    rs62143871    C    A    35.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.86;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC017083.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408516    GT:AD:DP:GQ:PL    0/1:2,2:4:65.45:65,0,66
2    68511506    rs112316333    GA    G    144.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DB;DP=11;FS=0.0;HRun=12;HaplotypeScore=35.4246;IndelType=D;MQ=56.71;MQ0=0;MQRankSum=-0.348;QD=13.13;ReadPosRankSum=0.696;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409559    GT:AD:DP:GQ:PL    1/1:1,10:11:5.31:184,5,0
2    68511584    rs735815    A    G    252.97    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=36;Dels=0.0;FS=1.399;HRun=1;HaplotypeScore=0.5784;MQ=59.02;MQ0=0;MQRankSum=0.156;QD=7.03;ReadPosRankSum=-0.33;SNPEFF_AMINO_ACID_CHANGE=S121;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_68511303_68511616;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNRIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409559    GT:AD:DP:GQ:PL    0/1:23,13:36:99:283,0,682
2    68592315    rs3732046    A    C    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_68592305_68592525;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    68592584    rs880668    T    C    1457.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1490,117,0
2    68592700    rs3770651    A    G    180.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:213,18,0
2    68607271    rs17035388    G    A    112.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.754;QD=16.1;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    0/1:3,4:7:78.21:143,0,78
2    68607293    rs72894177    C    G    109.12    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=15.59;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    0/1:2,5:7:45.97:139,0,46
2    68607713    rs7578296    C    G    360.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=25;Dels=0.0;FS=9.034;HRun=0;HaplotypeScore=1.5661;MQ=59.07;MQ0=0;MQRankSum=-1.126;QD=14.42;ReadPosRankSum=-0.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    0/1:12,12:25:99:390,0,410
2    68607947    rs3816281    G    T    1369.09    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.307;DB;DP=101;Dels=0.0;FS=0.751;HRun=0;HaplotypeScore=2.7474;MQ=59.13;MQ0=0;MQRankSum=-1.209;QD=13.56;ReadPosRankSum=1.119;SNPEFF_AMINO_ACID_CHANGE=K97N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_68607855_68608036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    0/1:53,48:101:99:1399,0,1764
2    68615438    rs3217525    A    AG    273.18    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.98;DB;DP=20;FS=0.0;HRun=4;HaplotypeScore=79.4166;IndelType=I;MQ=59.39;MQ0=0;MQRankSum=0.776;QD=13.66;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    0/1:11,9:20:99:312,0,282
2    68620151    rs2289689    C    T    277.26    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.194;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.279;QD=12.05;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    0/1:13,10:23:99:307,0,460
2    68620463    rs2289688    G    A    559.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.842;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.216;QD=12.43;ReadPosRankSum=-0.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    0/1:27,18:45:99:589,0,975
2    68622658    rs1373200    C    T    169.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.581;QD=12.08;ReadPosRankSum=0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    0/1:8,6:14:99:199,0,287
2    68622914    rs1063479    G    A    1312.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=58.89;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=R340K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_68622812_68624585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234313    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1345,99,0
2    68622952    rs1050181    G    C    331.19    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.112;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-2.186;QD=12.27;ReadPosRankSum=-0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474788    GT:AD:DP:GQ:PL    0/1:12,15:27:99:361,0,385
2    68622990    rs6725743    T    C    226.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.006;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.394;QD=10.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474788    GT:AD:DP:GQ:PL    0/1:11,11:22:99:256,0,396
2    68740519    rs11691554    C    T    864.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APLF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303795    GT:AD:DP:GQ:PL    1/1:0,22:24:66.22:898,66,0
2    68755797    .    G    A    273.41    MQFilter40    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.965;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.42;MQ0=55;MQRankSum=-0.767;QD=3.11;ReadPosRankSum=0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APLF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303795    GT:AD:DP:GQ:PL    0/1:49,39:88:99:303,0,242
2    68804884    .    AG    A    209.28    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=3.15;DP=21;FS=0.0;HRun=2;HaplotypeScore=54.2582;IndelType=D;MQ=59.42;MQ0=0;MQRankSum=-0.833;QD=9.97;ReadPosRankSum=-1.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APLF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303795    GT:AD:DP:GQ:PL    0/1:13,8:21:99:248,0,522
2    68962259    rs34504087    T    C    330.71    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.388;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8244;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=17.41;ReadPosRankSum=1.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544262    GT:AD:DP:GQ:PL    0/1:9,10:19:99:361,0,278
2    68962570    rs71413157    G    A    144.02    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.0;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295381    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:174,0,25
2    69002281    rs11685672    C    G    2027.49    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.085;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.66;MQ0=0;MQRankSum=0.463;QD=15.13;ReadPosRankSum=-1.461;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_69001933_69002552;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409030    GT:AD:DP:GQ:PL    0/1:62,72:134:99:2057,0,1996
2    69009304    rs2271834    C    T    676.29    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.247;QD=14.09;ReadPosRankSum=0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295381    GT:AD:DP:GQ:PL    0/1:26,22:48:99:706,0,825
2    69040216    rs2280309    G    T    84.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295381    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    69040500    rs2280310    G    A    946.50    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=43;Dels=0.0;FS=5.11;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.35;QD=22.01;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=Q212;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_69040419_69040551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467265    GT:AD:DP:GQ:PL    0/1:14,29:43:99:976,0,411
2    69043264    rs111911332    CT    C    129.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=11;HaplotypeScore=53.4306;IndelType=D;MQ=57.05;MQ0=0;QD=16.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456116    GT:AD:DP:GQ:PL    1/1:1,7:8:20.97:172,21,0
2    69043539    rs2271832    G    C    308.56    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=23;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.403;QD=13.42;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456116    GT:AD:DP:GQ:PL    0/1:13,10:23:99:339,0,471
2    69043681    rs939060    A    C    82.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456116    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    69045158    rs10197806    C    A    436.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6094;MQ=56.85;MQ0=0;MQRankSum=-0.336;QD=12.13;ReadPosRankSum=0.889;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456116    GT:AD:DP:GQ:PL    0/1:18,18:36:99:467,0,533
2    69045256    rs13418133    C    A    174.68    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.825;QD=15.88;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456116    GT:AD:DP:GQ:PL    0/1:5,6:11:99:205,0,154
2    69046406    rs17604346    C    T    1537.87    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.326;DB;DP=120;Dels=0.0;FS=3.615;HRun=0;HaplotypeScore=5.0004;MQ=59.84;MQ0=0;MQRankSum=1.088;QD=12.82;ReadPosRankSum=-0.348;SNPEFF_AMINO_ACID_CHANGE=A345;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_69046255_69046451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467265    GT:AD:DP:GQ:PL    0/1:65,55:120:99:1568,0,2052
2    69049398    rs35216182    C    G    1441.31    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=117;Dels=0.0;FS=0.89;HRun=0;HaplotypeScore=0.9665;MQ=59.8;MQ0=0;MQRankSum=-0.812;QD=12.32;ReadPosRankSum=-0.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473986    GT:AD:DP:GQ:PL    0/1:66,51:117:99:1471,0,1994
2    69049939    rs4241344    G    T    1476.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.881;DB;DP=100;Dels=0.0;FS=1.632;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=14.76;ReadPosRankSum=-0.115;SNPEFF_AMINO_ACID_CHANGE=R249S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_69049472_69050004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479844    GT:AD:DP:GQ:PL    0/1:50,50:100:99:1506,0,1586
2    69049941    rs10177248    T    C    1344.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.246;DB;DP=98;Dels=0.0;FS=0.772;HRun=0;HaplotypeScore=1.8939;MQ=60.0;MQ0=0;MQRankSum=0.985;QD=13.72;ReadPosRankSum=-0.133;SNPEFF_AMINO_ACID_CHANGE=M250T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_69049472_69050004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479844    GT:AD:DP:GQ:PL    0/1:49,49:98:99:1374,0,1607
2    69052991    rs2311421    A    G    55.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.25;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295381    GT:AD:DP:GQ:PL    0/1:3,3:6:85.47:85,0,99
2    69053557    rs9902    T    C    36.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARHGAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467265    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
2    69180161    rs7561266    T    A    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328895    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    69201894    rs4417751    C    T    473.35    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.85;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.076;QD=14.79;ReadPosRankSum=1.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377938    GT:AD:DP:GQ:PL    0/1:17,15:32:99:503,0,563
2    69204671    rs9808077    A    T    600.87    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.396;DB;DP=48;Dels=0.0;FS=1.133;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=12.52;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=L33;SNPEFF_CODON_CHANGE=ctA/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_69204627_69204680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377938    GT:AD:DP:GQ:PL    0/1:26,22:48:99:631,0,765
2    69205023    rs146210841    TAC    T    250.66    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=60.7295;IndelType=D;MQ=57.46;MQ0=0;MQRankSum=-0.311;QD=13.19;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377938    GT:AD:DP:GQ:PL    0/1:10,9:19:99:290,0,493
2    69207255    rs62133357    C    T    388.61    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=2.661;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.96;MQ0=0;MQRankSum=1.774;QD=21.59;ReadPosRankSum=-0.986;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478888    GT:AD:DP:GQ:PL    0/1:5,13:18:97.94:419,0,98
2    69207357    rs57983899    T    C    32.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.58;MQ0=0;MQRankSum=-0.736;QD=10.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478888    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:62,0,32
2    69208021    rs13431582    C    T    57.63    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=5.76;ReadPosRankSum=2.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478888    GT:AD:DP:GQ:PL    0/1:7,3:10:87.63:88,0,233
2    69272093    rs62135618    G    A    110.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.08;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:140,0,27
2    69297622    rs4591376    C    T    143.83    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=13.08;ReadPosRankSum=-2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:6,5:11:99:174,0,211
2    69298817    rs13030844    T    C    240.07    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=10.44;ReadPosRankSum=-1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:13,10:23:99:270,0,441
2    69317925    rs4854546    G    A    319.34    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=-0.452;QD=17.74;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:7,11:18:99:349,0,180
2    69318129    rs4241348    T    G    467.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481119    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:500,39,0
2    69330284    rs4241349    G    A    45.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.44;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497197    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:76,0,31
2    69350343    rs77890195    G    A    67.56    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=6.14;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:7,4:11:97.55:98,0,218
2    69351541    rs75580794    A    G    91.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=13.08;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:3,4:7:99:122,0,103
2    69351621    rs11126217    T    A    744.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:777,57,0
2    69364730    rs62134409    G    T    118.70    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=13;Dels=0.0;FS=12.175;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.191;QD=9.13;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:6,7:13:99:149,0,210
2    69398263    rs4299364    G    A    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,142
2    69409029    rs6749826    C    A    511.61    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.463;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4258;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=12.79;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:21,19:40:99:542,0,714
2    69420591    rs71928396    T    TCTCA    649.54    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=2.368;DB;DP=34;FS=1.773;HRun=0;HaplotypeScore=247.9664;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=3.127;QD=19.1;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:21,11:34:99:689,0,819
2    69475273    rs58786516    CAT    C    1600.29    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=5.095;DB;DP=90;FS=0.0;HRun=0;HaplotypeScore=315.0594;IndelType=D;MQ=57.92;MQ0=0;MQRankSum=-0.11;QD=17.78;ReadPosRankSum=0.369;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:57,33:90:99:1639,0,2729
2    69475343    rs112401681    GT    G    918.19    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=5.263;DB;DP=145;FS=2.226;HRun=11;HaplotypeScore=525.0372;IndelType=D;MQ=58.39;MQ0=0;MQRankSum=-0.211;QD=6.33;ReadPosRankSum=0.064;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303714    GT:AD:DP:GQ:PL    0/1:89,54:145:99:957,0,1868
2    69741609    rs2276689    C    T    2182.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=E590;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_69741603_69741881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2215,168,0
2    69741753    rs3832159    CTGT    C    912.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=105.0642;IndelType=D;MQ=64.78;MQ0=0;QD=38.0;SNPEFF_AMINO_ACID_CHANGE=QQ541Q;SNPEFF_CODON_CHANGE=caacag/cag;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_2_69741603_69741881;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:1,23:24:66.22:954,66,0
2    69741854    rs6715776    T    G    1218.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=K509Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_69741603_69741881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1251,93,0
2    69742067    rs12469876    T    A    69.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
2    69747817    rs2312211    G    C    1191.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1224,93,0
2    69754565    rs17570697    T    C    266.77    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.66;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.501;QD=10.26;ReadPosRankSum=0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470281    GT:AD:DP:GQ:PL    0/1:16,10:26:99:297,0,551
2    69758927    rs1985342    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    69759415    rs2276687    G    A    825.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:858,69,0
2    69771484    rs3771544    C    T    1449.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1483,114,0
2    69784255    rs3771543    C    T    664.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:698,54,0
2    69784278    rs3821277    T    C    465.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406297    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:498,42,0
2    70014986    rs11677629    T    C    590.52    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=58;Dels=0.0;FS=2.503;HRun=1;HaplotypeScore=0.9973;MQ=59.6;MQ0=0;MQRankSum=-0.761;QD=10.18;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394295    GT:AD:DP:GQ:PL    0/1:36,22:58:99:621,0,1068
2    70015181    rs10496171    C    T    457.78    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.359;DB;DP=43;Dels=0.0;FS=1.21;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.436;QD=10.65;ReadPosRankSum=-1.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394295    GT:AD:DP:GQ:PL    0/1:26,17:43:99:488,0,842
2    70015491    rs10186725    A    G    33.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394295    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
2    70031797    rs3771541    C    G    385.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484219    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:418,33,0
2    70033584    rs2228203    C    T    348.06    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.34;DB;DP=26;Dels=0.0;FS=1.54;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.797;QD=13.39;ReadPosRankSum=-0.386;SNPEFF_AMINO_ACID_CHANGE=T3M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_70033517_70033630;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536030    GT:AD:DP:GQ:PL    0/1:12,14:26:99:378,0,373
2    70033649    rs17037076    G    A    251.68    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.545;QD=19.36;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484219    GT:AD:DP:GQ:PL    0/1:5,8:13:99:282,0,162
2    70033711    rs3771539    G    C    35.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=5.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484219    GT:AD:DP:GQ:PL    0/1:4,2:6:65.59:66,0,143
2    70033795    rs3771538    A    T    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484219    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    70039677    rs2305523    A    C    212.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460439    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
2    70047644    rs2290452    G    A    67.64    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.91;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANXA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394295    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:98,0,31
2    70064927    rs1377996    C    A    141.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=11.82;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282570    GT:AD:DP:GQ:PL    0/1:6,6:12:99:172,0,206
2    70068057    rs3771533    G    A    391.58    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.334;DB;DP=22;Dels=0.0;FS=2.969;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.469;QD=17.8;ReadPosRankSum=0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282570    GT:AD:DP:GQ:PL    0/1:9,13:22:99:422,0,265
2    70068258    rs3836157    CT    C    119.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=6;HaplotypeScore=15.4243;IndelType=D;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468386    GT:AD:DP:GQ:PL    1/1:1,5:6:15.04:161,15,0
2    70076954    rs4852349    A    T    483.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282570    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:516,39,0
2    70098808    rs3214007    A    G    424.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282570    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:458,36,0
2    70121197    rs2278934    T    C    86.98    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=7.91;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244227    GT:AD:DP:GQ:PL    0/1:7,4:11:99:117,0,218
2    70124316    rs3752781    T    A    88.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=22.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244227    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
2    70124805    rs6720498    T    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    70131320    rs71397376    G    GT    439.72    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.066;DB;DP=30;FS=4.929;HRun=11;HaplotypeScore=93.6687;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=2.017;QD=14.66;ReadPosRankSum=-0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488986    GT:AD:DP:GQ:PL    0/1:12,18:30:99:479,0,125
2    70131584    rs1048130    G    A    746.20    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.244;DB;DP=61;Dels=0.0;FS=2.034;HRun=0;HaplotypeScore=2.6775;MQ=58.47;MQ0=0;MQRankSum=1.41;QD=12.23;ReadPosRankSum=-0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488986    GT:AD:DP:GQ:PL    0/1:35,26:61:99:776,0,1171
2    70131663    rs71397377    GCGTCAAC    G    572.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=95.1875;IndelType=D;MQ=41.96;MQ0=0;MQRankSum=-2.637;QD=47.68;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488986    GT:AD:DP:GQ:PL    0/1:4,8:12:99:611,0,433
2    70162534    rs11126250    T    G    4016.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4972;MQ=59.8;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=L53;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_70162483_70162597;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435990    GT:AD:DP:GQ:PL    1/1:0,118:118:99:4017,313,0
2    70164034    rs3771531    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264444    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    70164580    rs113584133    C    CAGGG    430.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=21.6731;IndelType=I;MQ=53.82;MQ0=0;QD=71.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264444    GT:AD:DP:GQ:PL    1/1:0,5:6:18.06:472,18,0
2    70188676    rs3796097    T    C    1492.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.685;DB;DP=44;Dels=0.0;FS=6.69;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-1.249;QD=33.93;ReadPosRankSum=0.846;SNPEFF_AMINO_ACID_CHANGE=T49A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_70187226_70189397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPRV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320256    GT:AD:DP:GQ:PL    1/1:1,43:44:85.56:1526,86,0
2    70454794    rs2592181    G    C    277.36    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.22;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.716;QD=11.56;ReadPosRankSum=1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481650    GT:AD:DP:GQ:PL    0/1:15,9:24:99:307,0,501
2    70456586    rs2706768    C    T    67.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.69;MQ0=0;MQRankSum=1.447;QD=6.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282574    GT:AD:DP:GQ:PL    0/1:6,4:10:97.17:97,0,151
2    70515067    rs34979618    G    GTT    387.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=34.9965;IndelType=I;MQ=58.11;MQ0=0;MQRankSum=0.825;QD=32.29;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272348    GT:AD:DP:GQ:PL    0/1:4,8:12:99:427,0,160
2    70524577    rs2618235    G    A    941.50    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=69;Dels=0.0;FS=1.122;HRun=0;HaplotypeScore=3.916;MQ=54.48;MQ0=2;MQRankSum=0.847;QD=13.64;ReadPosRankSum=0.374;SNPEFF_AMINO_ACID_CHANGE=N157;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_70524558_70524609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM136A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438759    GT:AD:DP:GQ:PL    0/1:37,32:69:99:971,0,999
2    70676769    rs148504120    GA    G    295.11    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.162;DB;DP=41;FS=3.73;HRun=9;HaplotypeScore=108.885;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.745;QD=7.2;ReadPosRankSum=1.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418333    GT:AD:DP:GQ:PL    0/1:25,16:41:99:334,0,550
2    70677994    rs2166975    G    A    103.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.46;ReadPosRankSum=-1.881;SNPEFF_AMINO_ACID_CHANGE=V159;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_70677305_70677998;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418333    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,185
2    70679067    rs3771522    G    A    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394241    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,71
2    71004413    rs55926232    C    CA    103.25    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=21;FS=0.0;HRun=16;HaplotypeScore=127.7711;IndelType=I;MQ=55.42;MQ0=0;MQRankSum=-0.15;QD=4.92;ReadPosRankSum=-2.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332372    GT:AD:DP:GQ:PL    0/1:7,8:21:19.95:142,0,20
2    71004492    rs56316086    T    C    281.91    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.602;DB;DP=37;Dels=0.0;FS=1.258;HRun=1;HaplotypeScore=0.8321;MQ=56.54;MQ0=0;MQRankSum=0.158;QD=7.62;ReadPosRankSum=-0.665;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332372    GT:AD:DP:GQ:PL    0/1:17,20:37:99:312,0,480
2    71004494    rs56135050    A    T    285.37    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.497;DB;DP=34;Dels=0.0;FS=1.377;HRun=5;HaplotypeScore=0.8321;MQ=56.22;MQ0=0;MQRankSum=-0.277;QD=8.39;ReadPosRankSum=-1.387;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332372    GT:AD:DP:GQ:PL    0/1:15,19:34:99:315,0,435
2    71012604    rs7566541    G    A    3423.64    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=6.373;DB;DP=229;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.748;MQ=59.19;MQ0=0;MQRankSum=0.88;QD=14.95;ReadPosRankSum=-0.269;SNPEFF_AMINO_ACID_CHANGE=H184;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71012547_71012771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGLA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332372    GT:AD:DP:GQ:PL    0/1:115,112:229:99:3424,0,3238
2    71012713    .    G    A    3184.26    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.079;DP=228;DS;Dels=0.0;FS=3.028;HRun=1;HaplotypeScore=2.6807;MQ=59.21;MQ0=0;MQRankSum=0.223;QD=13.97;ReadPosRankSum=0.653;SNPEFF_AMINO_ACID_CHANGE=S148L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71012547_71012771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332372    GT:AD:DP:GQ:PL    0/1:122,106:228:99:3214,0,3644
2    71012734    rs7566476    C    G    3036.82    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=215;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8943;MQ=59.46;MQ0=0;MQRankSum=1.413;QD=14.12;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=S141T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71012547_71012771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332372    GT:AD:DP:GQ:PL    0/1:110,105:215:99:3067,0,3332
2    71012946    rs7566700    C    A    195.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=58.33;MQ0=0;MQRankSum=0.299;QD=13.94;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332372    GT:AD:DP:GQ:PL    0/1:7,7:14:99:225,0,202
2    71036189    rs149426278    CA    C    700.70    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=4.747;DB;DP=39;FS=4.92;HRun=1;HaplotypeScore=94.9026;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=1.197;QD=17.97;ReadPosRankSum=-0.662;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272367    GT:AD:DP:GQ:PL    0/1:18,21:39:99:740,0,747
2    71036758    rs72315125    TCA    T    320.05    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.626;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=64.7858;IndelType=D;MQ=61.31;MQ0=0;MQRankSum=0.815;QD=16.0;ReadPosRankSum=-2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272367    GT:AD:DP:GQ:PL    0/1:9,11:20:99:359,0,306
2    71058184    rs13421115    C    T    1697.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=P328;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71057347_71058331;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD207;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000410009    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1730,126,0
2    71060936    rs17718987    G    C    4098.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7356;MQ=59.37;MQ0=0;QD=37.26;SNPEFF_AMINO_ACID_CHANGE=Q136E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71060777_71061151;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD207;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000410009    GT:AD:DP:GQ:PL    1/1:0,110:110:99:4099,301,0
2    71062648    rs10489990    G    A    1576.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.33;SNPEFF_AMINO_ACID_CHANGE=A55V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71062622_71062738;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD207;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000410009    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1610,120,0
2    71062833    rs72540731    G    GC    1071.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=1;HaplotypeScore=50.4017;IndelType=I;MQ=60.42;MQ0=0;QD=41.19;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_71062834_71062952;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD207;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000410009    GT:AD:DP:GQ:PL    1/1:1,25:26:75.25:1113,75,0
2    71162996    rs11685700    A    G    97.01    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.635;QD=8.08;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234392    GT:AD:DP:GQ:PL    0/1:7,5:12:99:127,0,206
2    71163086    rs11681642    T    C    240.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=22;Dels=0.0;FS=4.419;HRun=0;HaplotypeScore=0.0;MQ=56.99;MQ0=0;MQRankSum=0.722;QD=10.92;ReadPosRankSum=2.233;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_2_71163012_71163202;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000234396    GT:AD:DP:GQ:PL    0/1:11,11:22:99:270,0,341
2    71163225    rs759219    C    T    220.16    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.234;DB;DP=27;Dels=0.0;FS=1.655;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=-1.029;QD=8.15;ReadPosRankSum=-0.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234392    GT:AD:DP:GQ:PL    0/1:17,10:27:99:250,0,384
2    71206058    rs1115050    A    C    251.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=20.96;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272421    GT:AD:DP:GQ:PL    0/1:4,8:12:81.94:282,0,82
2    71211417    rs72832792    C    G    174.61    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.743;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.39;MQ0=0;MQRankSum=-0.478;QD=6.02;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460927    GT:AD:DP:GQ:PL    0/1:22,7:29:99:205,0,694
2    71211815    rs3796098    G    A    920.23    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.032;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.28;MQ0=0;MQRankSum=1.072;QD=14.38;ReadPosRankSum=-1.03;SNPEFF_AMINO_ACID_CHANGE=L292;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71211741_71212471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD53;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457410    GT:AD:DP:GQ:PL    0/1:34,30:64:99:950,0,1072
2    71211989    rs3796099    A    G    242.30    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.387;DB;DP=35;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.095;QD=6.92;ReadPosRankSum=0.286;SNPEFF_AMINO_ACID_CHANGE=T350;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71211741_71212471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD53;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457410    GT:AD:DP:GQ:PL    0/1:23,12:35:99:272,0,684
2    71215617    rs4852735    A    G    101.64    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.932;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.03;QD=5.08;ReadPosRankSum=-0.475;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272421    GT:AD:DP:GQ:PL    0/1:13,7:20:99:132,0,473
2    71216246    rs2286980    A    C    107.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.72;QD=17.94;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272421    GT:AD:DP:GQ:PL    0/1:2,4:6:56.02:138,0,56
2    71220793    rs2276684    T    G    1406.74    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.402;DB;DP=111;Dels=0.0;FS=8.312;HRun=1;HaplotypeScore=2.1445;MQ=59.79;MQ0=0;MQRankSum=1.225;QD=12.67;ReadPosRankSum=1.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX261;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272438    GT:AD:DP:GQ:PL    0/1:61,50:111:99:1437,0,1630
2    71221822    rs2302561    A    G    92.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.034;QD=7.74;ReadPosRankSum=-0.278;SNPEFF_AMINO_ACID_CHANGE=A22;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71221818_71222075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX261;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272438    GT:AD:DP:GQ:PL    0/1:8,4:12:99:123,0,200
2    71256424    rs400832    T    C    1689.58    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=1.815;DB;DP=160;Dels=0.0;FS=1.281;HRun=0;HaplotypeScore=1.9454;MQ=53.44;MQ0=3;MQRankSum=-6.584;QD=10.56;ReadPosRankSum=0.482;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC007040.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400027    GT:AD:DP:GQ:PL    0/1:91,69:160:99:1720,0,3009
2    71264791    rs6718347    T    C    152.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6229;MQ=48.97;MQ0=0;MQRankSum=-2.007;QD=10.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:6,8:14:99:183,0,166
2    71264795    rs6718350    T    G    176.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=15;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=1.6229;MQ=49.55;MQ0=0;MQRankSum=-2.062;QD=11.79;ReadPosRankSum=0.295;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:6,9:15:99:207,0,175
2    71264949    rs6718523    T    C    1151.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.486;DB;DP=77;Dels=0.0;FS=8.069;HRun=0;HaplotypeScore=1.7608;MQ=50.95;MQ0=1;MQRankSum=-1.598;QD=14.96;ReadPosRankSum=-0.998;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:33,44:77:99:1182,0,992
2    71265187    rs9309445    G    T    2322.50    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.355;DB;DP=147;Dels=0.0;FS=1.298;HRun=0;HaplotypeScore=2.598;MQ=57.92;MQ0=0;MQRankSum=1.188;QD=15.8;ReadPosRankSum=-1.289;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:71,76:147:99:2352,0,2175
2    71265308    rs71400975    C    CTT    657.70    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.767;DB;DP=57;FS=6.273;HRun=12;HaplotypeScore=271.5208;IndelType=I;MQ=55.84;MQ0=0;MQRankSum=-1.278;QD=11.54;ReadPosRankSum=-0.402;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:35,19:57:99:697,0,428
2    71282582    rs115758708    G    A    1550.12    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.298;DB;DP=108;Dels=0.0;FS=1.595;HRun=0;HaplotypeScore=1.7234;MQ=59.18;MQ0=0;MQRankSum=-0.436;QD=14.35;ReadPosRankSum=-1.674;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:55,53:108:99:1580,0,1465
2    71282604    rs111523839    A    G    1388.94    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.319;DB;DP=108;Dels=0.0;FS=1.603;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=1.303;QD=12.86;ReadPosRankSum=-3.901;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:56,52:108:99:1419,0,1818
2    71282633    rs4852757    C    T    1305.50    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.509;DB;DP=108;Dels=0.0;FS=6.317;HRun=0;HaplotypeScore=0.6651;MQ=59.18;MQ0=0;MQRankSum=-1.112;QD=12.09;ReadPosRankSum=0.531;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:61,46:108:99:1335,0,1836
2    71282696    rs1833352    G    A    2080.90    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=2.631;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9312;MQ=59.22;MQ0=0;MQRankSum=-1.232;QD=17.49;ReadPosRankSum=0.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:50,69:119:99:2111,0,1429
2    71282940    rs11885237    G    A    1426.40    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.051;DB;DP=98;Dels=0.0;FS=3.776;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.028;QD=14.56;ReadPosRankSum=-1.813;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:47,51:98:99:1456,0,1504
2    71283122    rs35074164    C    CT    334.89    PASS    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=3.613;DB;DP=62;FS=16.932;HRun=0;HaplotypeScore=203.4409;IndelType=I;MQ=54.95;MQ0=0;MQRankSum=-4.426;QD=5.32;ReadPosRankSum=0.989;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:50,13:62:99:374,0,1804
2    71283128    rs34797997    G    A    227.96    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.442;DB;DP=65;Dels=0.0;FS=12.593;HRun=1;HaplotypeScore=0.9789;MQ=54.46;MQ0=0;MQRankSum=-5.024;QD=3.51;ReadPosRankSum=-0.158;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007040.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434990    GT:AD:DP:GQ:PL    0/1:50,15:65:99:258,0,1560
2    71297982    rs2287327    C    T    327.76    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=16;Dels=0.0;FS=2.858;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=20.48;ReadPosRankSum=1.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497690    GT:AD:DP:GQ:PL    0/1:6,10:16:99:358,0,146
2    71300516    rs17616553    T    C    1441.12    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.589;DB;DP=93;Dels=0.0;FS=3.058;HRun=0;HaplotypeScore=0.734;MQ=59.25;MQ0=0;MQRankSum=-0.269;QD=15.5;ReadPosRankSum=0.004;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428360    GT:AD:DP:GQ:PL    0/1:47,46:93:99:1471,0,1581
2    71305267    rs10187472    T    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    71305456    rs6713    C    T    577.01    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=51;Dels=0.0;FS=2.539;HRun=2;HaplotypeScore=0.0;MQ=56.24;MQ0=0;MQRankSum=0.782;QD=11.31;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=L234;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71305448_71306935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAGK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418807    GT:AD:DP:GQ:PL    0/1:26,25:51:99:607,0,836
2    71351403    rs6748672    C    A    611.13    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.478;DB;DP=51;Dels=0.0;FS=10.41;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=11.98;ReadPosRankSum=0.775;SNPEFF_AMINO_ACID_CHANGE=R104L;SNPEFF_CODON_CHANGE=cGt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71351336_71351673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCEE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244217    GT:AD:DP:GQ:PL    0/1:30,21:51:99:641,0,958
2    71351779    rs58684004    T    C    95.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=-0.937;QD=13.66;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCEE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244217    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,103
2    71357417    rs2012479    C    A    270.05    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=24.55;ReadPosRankSum=1.532;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCEE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244217    GT:AD:DP:GQ:PL    0/1:2,9:11:36.63:300,0,37
2    71357634    rs1813348    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCEE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    71357710    rs981947    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCEE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    71360144    rs10199088    A    C    449.15    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=43;Dels=0.0;FS=2.816;HRun=0;HaplotypeScore=1.7675;MQ=59.46;MQ0=0;MQRankSum=0.624;QD=10.45;ReadPosRankSum=-0.159;SNPEFF_AMINO_ACID_CHANGE=E69A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71360028_71360706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244230    GT:AD:DP:GQ:PL    0/1:24,19:43:99:479,0,835
2    71360282    rs13010513    G    A    705.70    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.946;DB;DP=30;Dels=0.0;FS=1.661;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.68;QD=23.52;ReadPosRankSum=0.07;SNPEFF_AMINO_ACID_CHANGE=R115H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71360028_71360706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244230    GT:AD:DP:GQ:PL    0/1:8,22:30:99:736,0,206
2    71360625    rs1813160    G    T    579.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.583;DB;DP=73;Dels=0.0;FS=8.581;HRun=0;HaplotypeScore=3.2854;MQ=57.16;MQ0=0;MQRankSum=-0.962;QD=7.94;ReadPosRankSum=-0.759;SNPEFF_AMINO_ACID_CHANGE=E229D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71360028_71360706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244230    GT:AD:DP:GQ:PL    0/1:48,24:73:99:610,0,1497
2    71360723    rs1813159    A    G    1244.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8991;MQ=51.33;MQ0=0;QD=24.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468427    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1277,102,0
2    71360735    rs138875226    T    TTCC    2343.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=286.2038;IndelType=I;MQ=50.32;MQ0=0;QD=53.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468427    GT:AD:DP:GQ:PL    1/1:6,38:44:99:2385,111,0
2    71361332    rs9941620    T    G    121.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=20.18;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468427    GT:AD:DP:GQ:PL    0/1:2,4:6:63.82:151,0,64
2    71362046    rs12995262    T    A    111.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.64;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468427    GT:AD:DP:GQ:PL    0/1:2,4:6:64.40:142,0,64
2    71365676    rs357756    G    A    631.48    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=30;Dels=0.0;FS=6.237;HRun=1;HaplotypeScore=0.8321;MQ=58.75;MQ0=0;MQRankSum=-1.358;QD=21.05;ReadPosRankSum=-0.317;SNPEFF_AMINO_ACID_CHANGE=Q245;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71365620_71365761;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425650    GT:AD:DP:GQ:PL    0/1:9,21:30:99:661,0,268
2    71366876    rs357754    A    G    689.77    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.255;DB;DP=65;Dels=0.0;FS=3.913;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.857;QD=10.61;ReadPosRankSum=1.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498451    GT:AD:DP:GQ:PL    0/1:42,23:65:99:720,0,1421
2    71368519    .    C    A    38.01    FSFilter60;QDFilter2    AB=0.398;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.243;DP=123;Dels=0.0;FS=110.672;HRun=2;HaplotypeScore=8.8182;MQ=44.7;MQ0=0;MQRankSum=-3.774;QD=0.31;ReadPosRankSum=2.426;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498451    GT:AD:DP:GQ:PL    0/1:49,74:123:68:68,0,1532
2    71375065    rs63388060    A    C    835.14    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.734;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.232;QD=14.65;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244230    GT:AD:DP:GQ:PL    0/1:30,27:57:99:865,0,1022
2    71376999    rs6574    G    A    1089.90    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.223;QD=13.46;ReadPosRankSum=-0.099;SNPEFF_AMINO_ACID_CHANGE=E494K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71376996_71377230;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425650    GT:AD:DP:GQ:PL    0/1:40,41:81:99:1120,0,1265
2    71405578    rs383445    G    A    170.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244221    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
2    71415479    rs357780    T    C    174.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.16;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244221    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
2    71417065    rs357777    G    T    2554.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=P75;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71416975_71417151;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244221    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2587,196,0
2    71429687    rs13001756    C    G    2567.78    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=5.667;DB;DP=151;Dels=0.0;FS=3.422;HRun=2;HaplotypeScore=1.8583;MQ=60.0;MQ0=0;MQRankSum=-0.987;QD=17.01;ReadPosRankSum=0.699;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71429582_71429730;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244221    GT:AD:DP:GQ:PL    0/1:68,83:151:99:2598,0,1941
2    71429891    rs357761    C    T    126.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244221    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
2    71590964    rs4852255    C    G    158.28    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.951;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=10.55;ReadPosRankSum=-1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:8,7:15:99:188,0,298
2    71607539    rs17693408    G    A    590.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.783;DB;DP=30;Dels=0.0;FS=10.772;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.122;QD=19.69;ReadPosRankSum=-1.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:12,18:30:99:621,0,407
2    71615390    rs111496976    T    G    786.18    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.492;DB;DP=57;Dels=0.0;FS=2.132;HRun=1;HaplotypeScore=0.8941;MQ=59.6;MQ0=0;MQRankSum=-0.024;QD=13.79;ReadPosRankSum=-1.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:30,27:57:99:816,0,833
2    71615571    rs2542529    C    T    3836.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.0234;MQ=59.45;MQ0=0;QD=30.44;SNPEFF_AMINO_ACID_CHANGE=N802;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71615543_71615610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377802    GT:AD:DP:GQ:PL    1/1:1,123:126:99:3836,292,0
2    71620818    rs6741436    C    T    1980.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.66;MQ0=0;QD=29.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2014,160,0
2    71622610    rs111582481    C    T    141.57    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=23.59;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:1,5:6:23.18:172,0,23
2    71627217    rs144513841    T    C    617.75    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.075;QD=19.93;ReadPosRankSum=1.764;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410075    GT:AD:DP:GQ:PL    0/1:12,19:31:99:648,0,407
2    71627539    rs3771371    C    T    541.39    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=32;Dels=0.0;FS=2.013;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.614;QD=16.92;ReadPosRankSum=-1.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410075    GT:AD:DP:GQ:PL    0/1:13,19:32:99:571,0,419
2    71627860    rs10210436    G    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491843    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    71631345    rs4852256    A    T    135.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.097;DB;DP=14;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.356;QD=9.7;ReadPosRankSum=1.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:8,6:14:99:166,0,283
2    71633275    rs3732233    T    C    620.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.96;DB;DP=46;Dels=0.0;FS=4.387;HRun=0;HaplotypeScore=0.9578;MQ=59.59;MQ0=0;MQRankSum=-0.2;QD=13.48;ReadPosRankSum=1.936;SNPEFF_AMINO_ACID_CHANGE=I1006;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71633258_71633392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:23,23:46:99:650,0,717
2    71633389    rs6714975    C    T    459.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.56;DB;DP=40;Dels=0.0;FS=8.303;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.428;QD=11.48;ReadPosRankSum=-0.207;SNPEFF_AMINO_ACID_CHANGE=N1044;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71633258_71633392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:24,16:40:99:489,0,807
2    71635931    rs12466025    G    T    1054.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    1/1:1,35:36:81.27:1088,81,0
2    71636036    rs12474072    A    G    75.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.61;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,105
2    71645628    rs112652828    G    GTT    345.48    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=0.276;DB;DP=35;FS=0.0;HRun=11;HaplotypeScore=180.2108;IndelType=I;MQ=58.0;MQ0=0;MQRankSum=-0.092;QD=9.87;ReadPosRankSum=0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:23,7:35:99:385,0,465
2    71645828    rs4852783    G    A    797.44    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.277;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=2.122;QD=15.95;ReadPosRankSum=0.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:23,27:50:99:827,0,563
2    71645854    rs71402979    TGTA    T    444.62    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=207.7853;IndelType=D;MQ=53.71;MQ0=0;MQRankSum=-1.505;QD=16.47;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:16,11:27:99:484,0,926
2    71645890    rs4852784    G    C    565.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:599,48,0
2    71645946    rs4438512    G    A    136.59    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=19.51;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:2,5:7:62.24:167,0,62
2    71651597    rs7593986    C    G    40.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:71,0,33
2    71651939    rs12613800    T    A    287.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.32;QD=13.68;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264447    GT:AD:DP:GQ:PL    0/1:12,9:21:99:317,0,433
2    71661855    rs35526551    C    CA    720.31    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.508;DB;DP=43;FS=2.963;HRun=3;HaplotypeScore=106.9801;IndelType=I;MQ=58.58;MQ0=0;MQRankSum=-0.535;QD=16.75;ReadPosRankSum=-1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF638;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460310    GT:AD:DP:GQ:PL    0/1:22,21:43:99:759,0,597
2    71693943    rs61333801    G    A    65.11    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.02;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:1,4:5:24.94:95,0,25
2    71742736    rs61104194    C    T    925.90    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.576;QD=18.52;ReadPosRankSum=-0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:18,32:50:99:956,0,484
2    71747235    rs11675897    A    G    1662.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1695,141,0
2    71747432    rs75190231    G    T    554.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,20:20:54.13:587,54,0
2    71747568    rs12997658    G    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    71747723    rs12713754    C    G    110.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:143,12,0
2    71747851    rs12713755    T    C    1889.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.53;MQ0=0;QD=38.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1922,141,0
2    71747899    rs12713756    G    A    973.62    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.282;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=1.165;QD=12.81;ReadPosRankSum=3.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:42,34:76:99:1004,0,1221
2    71753487    rs35982795    C    T    543.35    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.124;DB;DP=42;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.19;QD=12.94;ReadPosRankSum=-0.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:22,20:42:99:573,0,620
2    71755380    rs4852800    A    G    420.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:453,33,0
2    71762232    rs4852801    C    T    543.45    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.434;DB;DP=68;Dels=0.0;FS=2.337;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.394;QD=7.99;ReadPosRankSum=-0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:43,25:68:99:573,0,1419
2    71762310    rs4852802    A    G    388.95    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.284;DB;DP=38;Dels=0.0;FS=1.323;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.06;QD=10.24;ReadPosRankSum=0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:23,15:38:99:419,0,834
2    71766124    rs79617374    G    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    71766487    rs7609409    G    A    36.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.22;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
2    71776345    rs736096    C    T    41.34    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=8.27;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:1,4:5:30.65:71,0,31
2    71776346    rs934061    A    G    68.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,5:5:11.98:101,12,0
2    71776544    rs188222201    A    G    49.01    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.057;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=2.88;ReadPosRankSum=1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:13,4:17:79:79,0,409
2    71780215    rs2303596    T    C    1452.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.53;MQ0=0;QD=29.64;SNPEFF_AMINO_ACID_CHANGE=D596;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71780141_71780318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409744    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1486,117,0
2    71781161    rs74340297    GAC    G    204.06    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=52.143;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=-0.049;QD=12.0;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:10,7:17:99:243,0,489
2    71796865    rs10205023    C    G    695.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,19:20:54.17:728,54,0
2    71797712    rs3764971    G    A    236.45    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=26.27;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:2,7:9:20.62:266,0,21
2    71801267    rs57041989    G    C    414.30    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=56.92;MQ0=0;MQRankSum=2.047;QD=18.01;ReadPosRankSum=-2.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461565    GT:AD:DP:GQ:PL    0/1:9,14:23:99:444,0,261
2    71801334    .    C    CAGGCGG    497.26    PASS    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.788;DP=42;FS=0.0;HRun=0;HaplotypeScore=316.6331;IndelType=I;MQ=53.14;MQ0=0;MQRankSum=-1.938;QD=11.84;ReadPosRankSum=-1.991;SNPEFF_AMINO_ACID_CHANGE=Q1048QAE;SNPEFF_CODON_CHANGE=cag/cAGGCGGag;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_2_71801328_71801501;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409744    GT:AD:DP:GQ:PL    0/1:34,6:42:99:536,0,1103
2    71801564    rs75127120    G    A    238.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.95;DB;DP=20;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.115;QD=11.93;ReadPosRankSum=1.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461565    GT:AD:DP:GQ:PL    0/1:12,8:20:99:269,0,382
2    71816602    rs3811611    G    C    535.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:569,42,0
2    71817003    rs1473228    A    G    171.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
2    71828423    rs2303604    A    T    211.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475076    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
2    71829821    rs1529408    G    T    334.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475076    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:367,27,0
2    71838597    rs2303606    C    A    545.87    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.685;DB;DP=48;Dels=0.0;FS=1.219;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.61;QD=11.37;ReadPosRankSum=1.059;SNPEFF_AMINO_ACID_CHANGE=I1323;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71838595_71838756;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409744    GT:AD:DP:GQ:PL    0/1:27,21:48:99:576,0,822
2    71871039    rs84181    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    71871236    rs84182    A    G    139.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468173    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:172,12,0
2    71891236    rs2303598    C    T    238.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:271,21,0
2    71891361    rs2303599    C    T    1318.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1351,102,0
2    71891650    .    C    G    87.56    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    71901286    rs2559081    C    T    734.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:768,60,0
2    71906171    rs1863812    T    C    1107.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8614;MQ=59.42;MQ0=0;MQRankSum=-1.348;QD=27.7;ReadPosRankSum=0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    1/1:1,38:39:58.90:1141,59,0
2    71906278    rs17718530    A    C    546.03    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.533;DB;DP=47;Dels=0.0;FS=2.597;HRun=3;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.624;QD=11.62;ReadPosRankSum=0.057;SNPEFF_AMINO_ACID_CHANGE=P1953;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_71906187_71906365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:23,24:47:99:576,0,749
2    71909822    rs2559082    C    T    259.23    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.106;QD=16.2;ReadPosRankSum=-2.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258104    GT:AD:DP:GQ:PL    0/1:7,9:16:99:289,0,157
2    72692272    rs5832083    A    AAG    5355.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;FS=0.0;HRun=0;HaplotypeScore=256.5518;IndelType=I;MQ=59.09;MQ0=0;QD=53.02;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_72688605_72692468;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000410104    GT:AD:DP:GQ:PL    1/1:5,94:101:99:5355,292,0
2    72742083    rs68104471    GAC    G    243.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=50.6633;IndelType=D;MQ=61.94;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272427    GT:AD:DP:GQ:PL    1/1:3,7:11:29.54:286,30,0
2    72786528    rs7559956    A    C    531.14    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.701;DB;DP=46;Dels=0.0;FS=3.183;HRun=1;HaplotypeScore=1.9998;MQ=59.5;MQ0=0;MQRankSum=-0.816;QD=11.55;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272427    GT:AD:DP:GQ:PL    0/1:26,20:46:99:561,0,799
2    72945013    rs4852891    T    G    210.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272427    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:244,21,0
2    72958022    rs5832088    T    TAAG    537.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=42.7987;IndelType=I;MQ=55.96;MQ0=0;QD=59.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272427    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:580,27,0
2    73151231    rs1561247    C    T    37.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
2    73339430    rs4143146    T    G    135.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAB11FIP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258098    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:168,15,0
2    73339708    rs1864488    G    A    400.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=C66;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_73339475_73340146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAB11FIP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258098    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:433,33,0
2    73471193    rs11289471    G    GT    162.94    PASS    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DB;DP=42;FS=0.0;HRun=17;HaplotypeScore=367.0494;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=-1.954;QD=3.88;ReadPosRankSum=-1.767;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399032    GT:AD:DP:GQ:PL    0/1:26,11:42:57.83:202,0,58
2    73491644    rs61733550    C    T    268.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.33;DB;DP=22;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=0.363;QD=12.22;ReadPosRankSum=-1.22;SNPEFF_AMINO_ACID_CHANGE=R523H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_73491406_73491647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521871    GT:AD:DP:GQ:PL    0/1:12,10:22:99:299,0,309
2    73491683    rs4852916    G    A    211.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=1.365;QD=15.14;ReadPosRankSum=-0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519873    GT:AD:DP:GQ:PL    0/1:6,8:14:99:242,0,141
2    73492614    rs526106    A    T    208.01    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=11;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=1.5778;MQ=60.0;MQ0=0;MQRankSum=-1.58;QD=18.91;ReadPosRankSum=-0.546;SNPEFF_AMINO_ACID_CHANGE=S454T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_73492410_73492768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521871    GT:AD:DP:GQ:PL    0/1:3,8:11:71.16:238,0,71
2    73649733    rs4852305    T    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264448    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
2    73650122    rs1881246    T    A    4253.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264448    GT:AD:DP:GQ:PL    1/1:0,119:119:99:4253,310,0
2    73659456    rs17434013    C    T    324.95    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.154;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.578;QD=18.05;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264448    GT:AD:DP:GQ:PL    0/1:8,10:18:99:355,0,227
2    73675019    rs71879475    CT    C    539.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=7;HaplotypeScore=58.1695;IndelType=D;MQ=56.1;MQ0=0;QD=26.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264448    GT:AD:DP:GQ:PL    1/1:1,19:20:57.13:581,57,0
2    73675227    rs34628045    T    TCTC    4323.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=0;HaplotypeScore=191.1445;IndelType=I;MQ=54.57;MQ0=0;QD=64.53;SNPEFF_AMINO_ACID_CHANGE=S482SP;SNPEFF_CODON_CHANGE=tct/tCTCct;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_2_73675090_73681194;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409009    GT:AD:DP:GQ:PL    1/1:4,62:67:99:4323,193,0
2    73675669    rs2037814    T    G    3781.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.973;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7885;MQ=59.78;MQ0=0;MQRankSum=-0.379;QD=36.01;ReadPosRankSum=1.072;SNPEFF_AMINO_ACID_CHANGE=V629G;SNPEFF_CODON_CHANGE=gTa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_73675090_73681194;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409009    GT:AD:DP:GQ:PL    1/1:1,104:105:99:3781,242,0
2    73675844    rs7598901    C    T    5583.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.56;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=F687;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_73675090_73681194;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409009    GT:AD:DP:GQ:PL    1/1:0,156:157:99:5583,418,0
2    73828310    rs1320374    T    C    2417.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264448    GT:AD:DP:GQ:PL    1/1:0,71:72:99:2450,184,0
2    73828538    rs1052161    G    A    915.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=R3987K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_73828322_73828563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALMS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409009    GT:AD:DP:GQ:PL    1/1:0,28:28:75.21:949,75,0
2    73867897    rs1879662    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    73898118    rs7570683    C    T    1703.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450720    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1737,126,0
2    73898359    rs4341964    G    A    781.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=39.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428767    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:815,60,0
2    73898420    rs2421582    A    G    246.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428767    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
2    73899613    rs2421585    T    G    2183.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.55;MQ0=0;QD=31.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428767    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2217,168,0
2    73899719    rs2421586    C    T    732.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.788;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.19;MQ0=0;MQRankSum=1.261;QD=31.83;ReadPosRankSum=0.473;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428767    GT:AD:DP:GQ:PL    1/1:1,22:23:26.20:765,26,0
2    73899955    rs6725284    G    T    1272.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428767    GT:AD:DP:GQ:PL    1/1:0,35:35:96.32:1305,96,0
2    73900210    rs4637150    A    G    819.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428767    GT:AD:DP:GQ:PL    1/1:0,27:27:63.18:852,63,0
2    73900329    rs2421587    G    A    168.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=33.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428767    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
2    73900844    rs7579068    C    G    393.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALMS1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428767    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:427,33,0
2    73927931    rs4852974    A    G    2477.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.12;MQ0=0;QD=33.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC092653.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377712    GT:AD:DP:GQ:PL    1/1:0,73:74:99:2511,187,0
2    73928098    rs2001490    C    G    3594.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.28;DB;DP=106;Dels=0.0;FS=3.052;HRun=0;HaplotypeScore=1.6598;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=33.91;ReadPosRankSum=-0.973;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC092653.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377712    GT:AD:DP:GQ:PL    1/1:1,105:106:99:3595,239,0
2    73928366    rs2012574    G    C    1700.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9967;MQ=58.88;MQ0=0;QD=27.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC092653.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377712    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1734,147,0
2    73957124    rs7210    A    G    660.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.04;SNPEFF_AMINO_ACID_CHANGE=I158;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_73956957_73957156;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPRKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272424    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:694,54,0
2    73957227    rs13003035    T    A    457.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462166    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:491,36,0
2    73993436    rs146956468    CA    C    60.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=14;HaplotypeScore=33.3088;IndelType=D;MQ=54.75;MQ0=0;QD=8.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377706    GT:AD:DP:GQ:PL    1/1:1,6:7:14.83:103,15,0
2    73994074    rs2567599    G    A    1345.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=37.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377706    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1379,102,0
2    74000701    rs2116367    C    T    496.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272444    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:529,39,0
2    74007136    rs2272051    T    C    882.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.75;SNPEFF_AMINO_ACID_CHANGE=D36G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_74007001_74007284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272444    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:915,72,0
2    74035880    rs11675635    A    G    74.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.02;MQ0=13;QD=3.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409561    GT:AD:DP:GQ:PL    1/1:9,11:20:9.02:107,9,0
2    74128361    rs1653258    T    G    173.14    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.792;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=8.66;ReadPosRankSum=0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345517    GT:AD:DP:GQ:PL    0/1:13,7:20:99:203,0,478
2    74128369    rs1632564    G    A    200.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.749;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-1.359;QD=8.04;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345517    GT:AD:DP:GQ:PL    0/1:15,10:25:99:231,0,525
2    74128391    rs1721241    G    C    207.95    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=3.298;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9867;MQ=57.87;MQ0=0;MQRankSum=0.534;QD=6.3;ReadPosRankSum=-0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345517    GT:AD:DP:GQ:PL    0/1:20,13:33:99:238,0,565
2    74128433    rs1050146    C    T    353.56    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.614;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3913;MQ=57.66;MQ0=0;MQRankSum=2.298;QD=8.84;ReadPosRankSum=-0.357;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468543    GT:AD:DP:GQ:PL    0/1:23,17:40:99:384,0,702
2    74129474    rs1726025    T    C    265.81    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=1.511;DB;DP=36;Dels=0.0;FS=3.43;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.687;QD=7.38;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468543    GT:AD:DP:GQ:PL    0/1:25,11:36:99:296,0,720
2    74129664    rs1653256    A    G    593.85    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.705;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.59;QD=14.85;ReadPosRankSum=-0.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468543    GT:AD:DP:GQ:PL    0/1:18,22:40:99:624,0,587
2    74129712    rs1721243    C    G    1388.24    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.67;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=59.69;MQ0=0;MQRankSum=-0.844;QD=18.76;ReadPosRankSum=-0.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468543    GT:AD:DP:GQ:PL    0/1:31,43:74:99:1418,0,1050
2    74129895    rs1721244    G    A    978.72    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.6;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.24;MQ0=0;MQRankSum=0.659;QD=16.04;ReadPosRankSum=-0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468543    GT:AD:DP:GQ:PL    0/1:29,32:61:99:1009,0,907
2    74130024    rs1653255    C    A    33.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.358;QD=6.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468543    GT:AD:DP:GQ:PL    0/1:3,2:5:63.58:64,0,109
2    74135732    rs702460    G    A    329.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.056;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.427;QD=10.98;ReadPosRankSum=0.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345517    GT:AD:DP:GQ:PL    0/1:18,12:30:99:359,0,621
2    74135797    rs702461    T    C    715.59    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.04;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;MQRankSum=0.651;QD=12.34;ReadPosRankSum=1.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345517    GT:AD:DP:GQ:PL    0/1:33,25:58:99:746,0,1086
2    74135898    rs756128    A    G    1113.99    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=1.39;DB;DP=86;Dels=0.0;FS=1.807;HRun=0;HaplotypeScore=5.2464;MQ=59.78;MQ0=0;MQRankSum=-0.054;QD=12.95;ReadPosRankSum=-1.247;SNPEFF_AMINO_ACID_CHANGE=E118;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_74135800_74135910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345517    GT:AD:DP:GQ:PL    0/1:46,40:86:99:1144,0,1423
2    74140581    rs891699    A    T    159.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.7465;MQ=58.27;MQ0=0;MQRankSum=0.952;QD=5.92;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442912    GT:AD:DP:GQ:PL    0/1:18,9:27:99:190,0,631
2    74140789    rs891698    T    C    668.89    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.293;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.21;QD=13.94;ReadPosRankSum=0.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429756    GT:AD:DP:GQ:PL    0/1:22,26:48:99:699,0,724
2    74140888    rs891697    A    C    239.16    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.449;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.122;QD=12.59;ReadPosRankSum=-0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429756    GT:AD:DP:GQ:PL    0/1:10,9:19:99:269,0,345
2    74153905    rs831526    C    T    163.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=32.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGUOK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264093    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
2    74273383    rs35957320    T    TC    511.15    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=27;FS=0.0;HRun=5;HaplotypeScore=58.4163;IndelType=I;MQ=60.4;MQ0=0;MQRankSum=-0.87;QD=18.93;ReadPosRankSum=1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305799    GT:AD:DP:GQ:PL    0/1:11,16:27:99:550,0,240
2    74300717    rs7560668    T    C    280.63    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.732;QD=16.51;ReadPosRankSum=0.927;SNPEFF_AMINO_ACID_CHANGE=L711;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_74300676_74300766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233310    GT:AD:DP:GQ:PL    0/1:7,10:17:99:311,0,239
2    74362990    rs9789534    T    A    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073263.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401851    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
2    74383630    rs11540640    G    A    210.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495286    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
2    74383911    rs828852    G    A    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495286    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
2    74383912    rs56259334    T    C    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495286    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
2    74386569    rs3762480    T    C    90.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409969    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:123,12,0
2    74394034    rs56873314    G    C    1180.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396049    GT:AD:DP:GQ:PL    1/1:0,30:30:87.29:1214,87,0
2    74405867    rs79791015    T    G    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_74405788_74405995;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396049    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    74425932    rs3821321    G    A    122.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264090    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
2    74439180    rs844169    T    G    124.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.21;MQ0=0;QD=24.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462026    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
2    74448655    rs7587117    T    C    265.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.801;DB;DP=27;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.605;QD=9.83;ReadPosRankSum=0.789;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394053    GT:AD:DP:GQ:PL    0/1:13,13:27:99:295,0,431
2    74448672    rs1020485    C    A    232.18    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;Dels=0.05;FS=2.392;HRun=1;HaplotypeScore=0.9665;MQ=58.89;MQ0=0;MQRankSum=0.204;QD=11.06;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394053    GT:AD:DP:GQ:PL    0/1:11,9:20:99:262,0,287
2    74451762    rs12053233    C    T    97.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=56.62;MQ0=0;MQRankSum=0.937;QD=13.92;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425249    GT:AD:DP:GQ:PL    0/1:3,4:7:94.96:127,0,95
2    74466805    rs12464182    C    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346834    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    74482892    rs7602215    T    C    177.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=17.78;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346834    GT:AD:DP:GQ:PL    0/1:4,6:10:94.63:208,0,95
2    74512808    rs12617294    G    A    158.85    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=0.747;QD=19.86;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436454    GT:AD:DP:GQ:PL    0/1:1,7:8:20.72:189,0,21
2    74531420    rs9309483    T    C    38.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.96;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346834    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:69,0,23
2    74589019    rs741788    A    G    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492717    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,106
2    74595014    rs909177    G    A    592    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=10.76;ReadPosRankSum=1.294;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458655    GT:AD:DP:GQ:PL    0/1:34,20:55:99:622,0,1131
2    74596168    rs5832131    G    GA    575.14    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.541;DB;DP=24;FS=4.416;HRun=1;HaplotypeScore=65.0626;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=0.214;QD=23.96;ReadPosRankSum=0.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458655    GT:AD:DP:GQ:PL    0/1:9,14:24:99:614,0,233
2    74597527    rs740277    G    A    333.57    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.992;DB;DP=33;Dels=0.0;FS=8.039;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.954;QD=10.11;ReadPosRankSum=-1.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458655    GT:AD:DP:GQ:PL    0/1:21,12:33:99:364,0,617
2    74604673    rs3213672    C    T    863.87    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=3.557;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.232;QD=13.29;ReadPosRankSum=1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413111    GT:AD:DP:GQ:PL    0/1:37,28:65:99:894,0,1160
2    74604895    rs3815241    T    C    429.76    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.162;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=14.82;ReadPosRankSum=0.943;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413111    GT:AD:DP:GQ:PL    0/1:13,16:29:99:460,0,383
2    74641622    rs139920523    A    G    292.12    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=22.47;ReadPosRankSum=1.62;SNPEFF_AMINO_ACID_CHANGE=V466A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_74641304_74643710;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf81;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000517883    GT:AD:DP:GQ:PL    0/1:4,9:13:99:322,0,107
2    74649916    .    TC    T    445.26    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=5;HaplotypeScore=107.5264;IndelType=D;MQ=54.32;MQ0=0;QD=26.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233330    GT:AD:DP:GQ:PL    1/1:9,8:17:50.75:487,51,0
2    74689078    rs142032474    C    T    490.58    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=40;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=0.9159;MQ=59.42;MQ0=0;MQRankSum=0.916;QD=12.26;ReadPosRankSum=-0.099;SNPEFF_AMINO_ACID_CHANGE=R507Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_74688185_74690139;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOGS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452063    GT:AD:DP:GQ:PL    0/1:22,18:40:99:521,0,601
2    74720002    rs4853026    C    G    1744.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.04;MQ0=0;QD=31.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341396    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1778,132,0
2    74725144    rs6546908    T    C    750.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=E165;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_74724644_74725445;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000460508    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:783,60,0
2    74756548    rs1183739    G    C    35.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.9;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=L43;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_74756489_74756626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AUP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258081    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:66,0,74
2    74884611    rs205650    A    G    233.61    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.57;ReadPosRankSum=1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339773    GT:AD:DP:GQ:PL    0/1:7,8:15:99:264,0,237
2    74900495    rs205648    G    A    674.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339773    GT:AD:DP:GQ:PL    1/1:0,21:21:57.15:707,57,0
2    75061475    rs11556194    G    C    87.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409174    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
2    75061873    rs663504    C    G    265.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:298,24,0
2    75105798    rs604112    A    G    210.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
2    75107201    rs17010492    G    A    354.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3696;MQ=59.32;MQ0=0;MQRankSum=1.648;QD=10.43;ReadPosRankSum=-1.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    0/1:17,17:34:99:385,0,340
2    75107246    rs11903758    C    G    962.28    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.283;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7675;MQ=58.97;MQ0=0;MQRankSum=0.524;QD=15.27;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    0/1:30,33:63:99:992,0,933
2    75108697    rs77041784    T    A    271.76    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=27.18;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    0/1:2,8:10:53.42:302,0,53
2    75113572    rs2306806    G    A    1307.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1341,102,0
2    75113657    rs2229626    C    T    1073.14    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=51;Dels=0.0;FS=2.697;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=21.04;ReadPosRankSum=1.027;SNPEFF_AMINO_ACID_CHANGE=N664;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_75113617_75113800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409174    GT:AD:DP:GQ:PL    0/1:20,31:51:99:1103,0,511
2    75113789    rs2229627    C    G    1175.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.99;SNPEFF_AMINO_ACID_CHANGE=P708;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_75113617_75113800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409174    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1209,99,0
2    75113903    rs17741356    A    G    295.81    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=21.13;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    0/1:4,10:14:99:326,0,116
2    75115108    rs10194657    A    G    1528.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.66;QD=31.85;ReadPosRankSum=-0.577;SNPEFF_AMINO_ACID_CHANGE=L738;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_75115030_75115185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409174    GT:AD:DP:GQ:PL    1/1:1,47:48:79.15:1562,79,0
2    75115379    rs2279429    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    75116627    rs4853069    C    T    156.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290573    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:189,15,0
2    75157617    rs33988806    T    TCCTC    1889.17    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.927;DB;DP=57;FS=13.649;HRun=0;HaplotypeScore=232.7744;IndelType=I;MQ=57.48;MQ0=0;MQRankSum=-0.365;QD=33.14;ReadPosRankSum=-0.347;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC104135.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377469    GT:AD:DP:GQ:PL    0/1:33,22:57:99:1928,0,1569
2    75187573    rs3771799    G    A    801.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473023    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:835,63,0
2    75187793    rs3821312    A    T    687.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473023    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:720,54,0
2    75187869    rs3771800    T    C    51.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.74;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473023    GT:AD:DP:GQ:PL    0/1:6,3:9:81.62:82,0,218
2    75196731    rs7881    A    G    166.06    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=1.246;QD=15.1;ReadPosRankSum=0.278;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233699    GT:AD:DP:GQ:PL    0/1:4,7:11:99:196,0,120
2    75276429    rs881    C    G    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=5.64;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409848    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,139
2    75425623    rs2024512    G    A    1012.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305249    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1046,75,0
2    75425728    rs6715729    A    G    1638.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.91;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.91;MQ0=0;MQRankSum=-1.615;QD=27.31;ReadPosRankSum=1.028;SNPEFF_AMINO_ACID_CHANGE=F111;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_75425672_75426826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305249    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1672,105,0
2    75720664    rs6741778    G    A    231.05    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=26;Dels=0.0;FS=3.751;HRun=1;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=0.659;QD=8.89;ReadPosRankSum=-1.449;SNPEFF_AMINO_ACID_CHANGE=L41;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_75720200_75720735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM176A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000410010    GT:AD:DP:GQ:PL    0/1:16,10:26:99:261,0,543
2    75744918    rs2286995    T    C    567.02    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.037;DB;DP=57;Dels=0.0;FS=1.214;HRun=3;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.024;QD=9.78;ReadPosRankSum=0.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486696    GT:AD:DP:GQ:PL    0/1:32,25:57:99:597,0,1009
2    75879452    rs4853168    G    C    555.50    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=37;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.06;QD=15.01;ReadPosRankSum=0.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRPL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493686    GT:AD:DP:GQ:PL    0/1:19,18:37:99:585,0,501
2    75881828    rs6759555    T    C    470.11    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.171;DB;DP=29;Dels=0.0;FS=13.222;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.381;QD=16.21;ReadPosRankSum=-3.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRPL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393909    GT:AD:DP:GQ:PL    0/1:13,16:29:99:500,0,443
2    75882399    rs17689863    G    A    455.27    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=34;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9916;MQ=57.94;MQ0=0;MQRankSum=0.052;QD=13.39;ReadPosRankSum=1.604;SNPEFF_AMINO_ACID_CHANGE=S289;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_75882190_75884986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRPL19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393909    GT:AD:DP:GQ:PL    0/1:18,16:34:99:485,0,589
2    75892111    rs17690224    T    C    57.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=11.53;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321027    GT:AD:DP:GQ:PL    0/1:2,3:5:68.95:88,0,69
2    75900700    rs5832172    C    CA    136.26    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=23;FS=0.0;HRun=9;HaplotypeScore=58.3103;IndelType=I;MQ=60.13;MQ0=0;MQRankSum=0.38;QD=5.92;ReadPosRankSum=-0.549;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRPL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409374    GT:AD:DP:GQ:PL    0/1:16,7:23:99:175,0,256
2    75915035    rs1803196    C    T    939.77    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.516;DB;DP=71;Dels=0.0;FS=8.645;HRun=0;HaplotypeScore=0.7887;MQ=59.68;MQ0=0;MQRankSum=0.667;QD=13.24;ReadPosRankSum=-0.238;SNPEFF_AMINO_ACID_CHANGE=V498;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_75914953_75915103;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409857    GT:AD:DP:GQ:PL    0/1:40,31:71:99:970,0,1126
2    75917612    rs2301978    G    A    55.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7621;MQ=55.21;MQ0=0;MQRankSum=0.406;QD=9.25;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486016    GT:AD:DP:GQ:PL    0/1:3,3:6:85.51:86,0,100
2    75923413    rs7560262    T    C    1456.08    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.688;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7642;MQ=59.38;MQ0=0;MQRankSum=0.722;QD=16.0;ReadPosRankSum=0.554;SNPEFF_AMINO_ACID_CHANGE=N174S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_75923378_75923441;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442309    GT:AD:DP:GQ:PL    0/1:40,51:91:99:1486,0,1146
2    75928300    rs6547019    G    T    409.39    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.496;DB;DP=23;Dels=0.0;FS=2.993;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.354;QD=17.8;ReadPosRankSum=-1.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470503    GT:AD:DP:GQ:PL    0/1:9,14:23:99:439,0,310
2    75929130    rs3088181    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321027    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    75929238    rs3088180    C    A    477.98    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.444;QD=21.73;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321027    GT:AD:DP:GQ:PL    0/1:8,14:22:99:508,0,260
2    75933830    rs6728499    T    A    419.05    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.182;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.455;QD=13.52;ReadPosRankSum=1.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321027    GT:AD:DP:GQ:PL    0/1:16,15:31:99:449,0,474
2    77748595    rs7571330    T    C    343.57    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7652;MQ=57.53;MQ0=0;MQRankSum=-0.784;QD=18.08;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409088    GT:AD:DP:GQ:PL    0/1:8,11:19:99:374,0,259
2    77748604    rs113233659    TA    T    236.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=26;FS=0.0;HRun=10;HaplotypeScore=131.3974;IndelType=D;MQ=59.06;MQ0=0;MQRankSum=1.165;QD=9.1;ReadPosRankSum=-0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409088    GT:AD:DP:GQ:PL    0/1:13,13:26:99:276,0,228
2    78640076    rs2018108    A    G    1066.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=35.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC064872.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434498    GT:AD:DP:GQ:PL    1/1:0,30:30:84.26:1100,84,0
2    78640294    rs768071    A    G    128.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC064872.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434498    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
2    79254065    rs431912    C    T    235.30    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=57.17;MQ0=2;MQRankSum=-1.082;QD=7.84;ReadPosRankSum=-1.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272324    GT:AD:DP:GQ:PL    0/1:19,11:30:99:265,0,681
2    79254101    rs396461    T    G    529.79    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.523;DB;DP=53;Dels=0.0;FS=1.218;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=2;MQRankSum=-1.113;QD=10.0;ReadPosRankSum=2.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498312    GT:AD:DP:GQ:PL    0/1:29,24:53:99:560,0,935
2    79254261    rs452267    T    C    2217.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_AMINO_ACID_CHANGE=Y99;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_79254160_79254297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG3G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272324    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2251,166,0
2    79254442    rs17016222    C    T    212.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=15.2;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490944    GT:AD:DP:GQ:PL    0/1:7,7:14:99:243,0,207
2    79255325    rs2290079    G    C    774.64    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=2.203;DB;DP=43;Dels=0.0;FS=11.541;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.219;QD=18.01;ReadPosRankSum=0.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490944    GT:AD:DP:GQ:PL    0/1:18,25:43:99:805,0,545
2    79255426    rs383969    G    C    1617.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490944    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1650,120,0
2    79312414    rs3739144    G    A    1563.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469052    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1597,117,0
2    79312929    rs59414646    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469052    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    79312982    rs6547221    A    C    79.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469052    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
2    79313815    rs2073445    G    T    1156.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469052    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1189,99,0
2    79314081    rs6738657    T    C    912.71    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.861;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7303;MQ=59.57;MQ0=0;MQRankSum=0.063;QD=16.01;ReadPosRankSum=-0.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469052    GT:AD:DP:GQ:PL    0/1:24,33:57:99:943,0,748
2    79314094    rs6723688    G    T    1567.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.97;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469052    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1601,120,0
2    79314876    rs2073444    C    A    218.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305089    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
2    79348129    rs11339710    GA    G    154.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=15;HaplotypeScore=122.6979;IndelType=D;MQ=56.4;MQ0=0;QD=7.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=REG1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233735    GT:AD:DP:GQ:PL    1/1:2,14:20:34.60:196,35,0
2    79350186    rs3739142    G    A    898.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.31;MQ0=0;QD=35.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=REG1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461579    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:931,72,0
2    79350347    rs12228    A    G    803.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=REG1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461579    GT:AD:DP:GQ:PL    1/1:0,26:26:60.20:837,60,0
2    79350505    rs12072    C    T    116.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=REG1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461579    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
2    79364979    rs892867    G    A    206.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=REG1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377435    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
2    79386560    rs56413330    G    A    472.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.112;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.416;QD=16.31;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REG3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409839    GT:AD:DP:GQ:PL    0/1:12,16:29:99:503,0,376
2    79422965    rs1434199    C    G    633.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466387    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:667,48,0
2    79423062    rs3979543    TTTTG    T    301.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=44.1932;IndelType=D;MQ=57.23;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466387    GT:AD:DP:GQ:PL    1/1:2,7:9:21.07:343,21,0
2    79914570    rs112905811    C    CT    163.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=12;HaplotypeScore=86.8861;IndelType=I;MQ=47.12;MQ0=0;QD=20.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361291    GT:AD:DP:GQ:PL    1/1:1,6:8:23.68:206,24,0
2    80529956    rs6733871    T    C    43.98    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.072;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=58.83;MQ0=0;MQRankSum=0.938;QD=2.75;ReadPosRankSum=-1.227;SNPEFF_AMINO_ACID_CHANGE=N330S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_80529003_80531003;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRRTM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295057    GT:AD:DP:GQ:PL    0/1:12,4:16:73.97:74,0,442
2    80540600    rs17018984    C    T    438.69    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.245;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-2.367;QD=16.25;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361291    GT:AD:DP:GQ:PL    0/1:12,15:27:99:469,0,419
2    80801042    rs1344798    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    80801052    rs6719427    G    C    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
2    80801346    rs17019360    T    C    2924.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.184;DB;DP=96;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.4672;MQ=59.08;MQ0=0;MQRankSum=1.695;QD=30.47;ReadPosRankSum=1.585;SNPEFF_AMINO_ACID_CHANGE=V279;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_80801288_80801439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343114    GT:AD:DP:GQ:PL    1/1:1,95:96:99:2958,232,0
2    80809027    rs17019401    C    G    32.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=3.61;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343114    GT:AD:DP:GQ:PL    0/1:6,3:9:62.45:62,0,189
2    80846147    rs71386643    C    CT    226.39    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=30;FS=0.0;HRun=13;HaplotypeScore=240.6228;IndelType=I;MQ=54.37;MQ0=0;MQRankSum=-0.54;QD=7.55;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343114    GT:AD:DP:GQ:PL    0/1:18,10:30:99:265,0,138
2    81421230    rs13030022    C    G    819.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.064;DB;DP=29;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=28.26;ReadPosRankSum=-1.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC105342.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378334    GT:AD:DP:GQ:PL    1/1:1,28:29:42.08:853,42,0
2    82112809    rs66550082    A    G    1054.80    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.608;DB;DP=69;Dels=0.0;FS=4.861;HRun=1;HaplotypeScore=0.9665;MQ=59.67;MQ0=0;MQRankSum=-1.096;QD=15.29;ReadPosRankSum=-1.194;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC105419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408780    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1085,0,1030
2    82113089    rs12714061    T    C    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC105419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408780    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    83083845    rs1420755    C    T    180.27    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=1.093;QD=13.87;ReadPosRankSum=0.555;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC098817.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342938    GT:AD:DP:GQ:PL    0/1:7,6:13:99:210,0,246
2    84517811    .    C    T    138.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=19.78;ReadPosRankSum=-0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=FUNDC2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331369    GT:AD:DP:GQ:PL    0/1:2,5:7:64.59:168,0,65
2    84518438    rs1968722    T    C    1538.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=FUNDC2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443452    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1571,120,0
2    84650707    rs2832    A    G    114.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUCLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487809    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
2    84652653    rs113840224    G    A    1801.86    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=3.512;DB;DP=131;Dels=0.0;FS=4.238;HRun=0;HaplotypeScore=3.6386;MQ=59.83;MQ0=0;MQRankSum=0.384;QD=13.65;ReadPosRankSum=-0.026;SNPEFF_AMINO_ACID_CHANGE=A300;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_84652539_84652727;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUCLG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393868    GT:AD:DP:GQ:PL    0/1:67,64:131:99:1832,0,1966
2    84755996    rs113333424    A    ATT    658.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.069;DB;DP=28;FS=0.0;HRun=11;HaplotypeScore=185.6223;IndelType=I;MQ=60.39;MQ0=0;MQRankSum=1.179;QD=23.51;ReadPosRankSum=-0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:4,15:28:41.51:700,42,0
2    84756049    rs4832089    G    A    1638.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.22;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=V141M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_84756028_84756290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1671,129,0
2    84756341    rs4832090    T    G    971.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1005,75,0
2    84756450    rs4832091    C    A    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
2    84771480    rs1037863    G    A    2295.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.63;SNPEFF_AMINO_ACID_CHANGE=L262;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_84771357_84771624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2328,169,0
2    84771567    rs1542477    C    T    1559    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=S291;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_84771357_84771624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1592,117,0
2    84774893    rs12474026    G    A    367.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468661    GT:AD:DP:GQ:PL    1/1:0,11:12:33.10:401,33,0
2    84800605    rs11891970    C    A    2537.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=59.69;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=A606;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_84800591_84800711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2570,190,0
2    84806553    rs6547569    G    A    639.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:672,51,0
2    84822549    rs12466574    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    84822715    rs6761632    C    T    1042.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,29:29:81.27:1076,81,0
2    84831767    rs7570369    G    A    170.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,5:6:15.05:203,15,0
2    84833884    rs10193468    G    T    79.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
2    84834063    rs4276039    T    C    2777.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2811,211,0
2    84834237    rs4441485    T    C    2332.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2365,193,0
2    84834375    rs4240194    C    T    241.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
2    84834396    rs4240195    T    A    111.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:144,12,0
2    84834404    rs4240196    T    C    88.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    84861729    rs61730451    G    A    1954.91    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.711;DB;DP=127;Dels=0.01;FS=0.666;HRun=1;HaplotypeScore=4.1581;MQ=59.64;MQ0=0;MQRankSum=-0.445;QD=15.27;ReadPosRankSum=1.08;SNPEFF_AMINO_ACID_CHANGE=Q1539;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_84861628_84861765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    0/1:60,67:127:99:1985,0,1746
2    84897361    rs12470102    T    A    376.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:410,30,0
2    84897517    rs1881095    A    G    2120.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.564;MQ=59.23;MQ0=0;QD=35.34;SNPEFF_AMINO_ACID_CHANGE=L2124;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_84897452_84897599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2153,163,0
2    84899360    rs4832106    G    A    558.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:591,45,0
2    84899761    rs4831983    C    G    168.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
2    84915469    rs41490447    A    T    518.27    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.661;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.778;QD=19.93;ReadPosRankSum=0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    0/1:11,15:26:99:548,0,377
2    84924823    rs78190897    T    C    882.54    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=2.701;DB;DP=43;Dels=0.0;FS=3.154;HRun=0;HaplotypeScore=0.8667;MQ=59.46;MQ0=0;MQRankSum=-0.188;QD=20.52;ReadPosRankSum=-0.239;SNPEFF_AMINO_ACID_CHANGE=V2501A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_84924699_84924914;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398278    GT:AD:DP:GQ:PL    0/1:16,27:43:99:913,0,485
2    84940477    rs4832108    T    C    402.40    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.823;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.244;QD=14.37;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    0/1:13,15:28:99:432,0,431
2    84945679    rs1192343    C    T    45.01    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=5.63;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237449    GT:AD:DP:GQ:PL    0/1:5,3:8:75:75,0,159
2    85143406    rs9678007    A    T    473.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.33;MQ0=0;QD=31.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC022210.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393863    GT:AD:DP:GQ:PL    1/1:0,14:15:42.08:506,42,0
2    85143835    rs35792004    A    T    102.91    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=13;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=56.83;MQ0=0;MQRankSum=0.244;QD=7.92;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC022210.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393863    GT:AD:DP:GQ:PL    0/1:5,8:13:99:133,0,173
2    85510777    rs7574856    A    G    612.51    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=3.588;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.573;QD=12.5;ReadPosRankSum=-1.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282111    GT:AD:DP:GQ:PL    0/1:27,22:49:99:643,0,891
2    85526399    rs10184914    G    A    649.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.613;DB;DP=38;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.642;QD=17.1;ReadPosRankSum=1.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282111    GT:AD:DP:GQ:PL    0/1:19,19:38:99:680,0,642
2    85532205    rs6741339    C    G    97.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.83;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442813    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,178
2    85533227    rs2271629    G    A    275.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.472;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=15.29;ReadPosRankSum=-0.618;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442813    GT:AD:DP:GQ:PL    0/1:9,9:18:99:305,0,225
2    85542686    rs7608881    G    C    528.06    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.448;QD=13.2;ReadPosRankSum=-1.672;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282120    GT:AD:DP:GQ:PL    0/1:17,23:40:99:558,0,416
2    85542718    rs7608892    G    A    594    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=38;Dels=0.0;FS=4.492;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.671;QD=15.63;ReadPosRankSum=0.934;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282120    GT:AD:DP:GQ:PL    0/1:19,19:38:99:624,0,592
2    85542814    .    T    G    112.36    QDFilter2    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.182;DP=59;Dels=0.0;FS=47.863;HRun=2;HaplotypeScore=3.5365;MQ=57.33;MQ0=0;MQRankSum=-0.839;QD=1.9;ReadPosRankSum=2.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282120    GT:AD:DP:GQ:PL    0/1:26,33:59:99:142,0,858
2    85543064    rs4446071    T    C    287.22    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.469;DB;DP=30;Dels=0.0;FS=4.505;HRun=0;HaplotypeScore=0.9469;MQ=59.23;MQ0=0;MQRankSum=1.59;QD=9.57;ReadPosRankSum=-0.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282120    GT:AD:DP:GQ:PL    0/1:17,13:30:99:317,0,559
2    85543222    rs4599108    C    T    119.17    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=54.43;MQ0=0;MQRankSum=-0.667;QD=8.51;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282120    GT:AD:DP:GQ:PL    0/1:9,5:14:99:149,0,241
2    85549868    rs4240199    A    G    1811.12    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=122;Dels=0.0;FS=6.944;HRun=4;HaplotypeScore=0.6651;MQ=59.81;MQ0=0;MQRankSum=-0.347;QD=14.85;ReadPosRankSum=-0.388;SNPEFF_AMINO_ACID_CHANGE=*455Q;SNPEFF_CODON_CHANGE=Taa/Caa;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_2_85549017_85549922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGOLN2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000409015    GT:AD:DP:GQ:PL    0/1:56,66:122:99:1841,0,1658
2    85553784    rs1044973    C    T    1992.14    PASS    AB=0.454;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.235;DB;DP=130;Dels=0.0;FS=0.658;HRun=1;HaplotypeScore=1.8237;MQ=59.47;MQ0=0;MQRankSum=-0.697;QD=15.32;ReadPosRankSum=-0.145;SNPEFF_AMINO_ACID_CHANGE=G201;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_85553631_85553927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGOLN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282120    GT:AD:DP:GQ:PL    0/1:59,71:130:99:2022,0,1841
2    85554885    rs57481159    G    A    67.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.55;QD=8.45;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGOLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282120    GT:AD:DP:GQ:PL    0/1:4,4:8:97.57:98,0,139
2    85571710    rs4832171    A    G    468.47    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.983;DB;DP=53;Dels=0.0;FS=2.564;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.247;QD=8.84;ReadPosRankSum=0.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RETSAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263854    GT:AD:DP:GQ:PL    0/1:34,19:53:99:498,0,966
2    85590286    rs7564372    C    T    370.36    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.208;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.218;QD=13.72;ReadPosRankSum=0.315;SNPEFF_AMINO_ACID_CHANGE=R66C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_85590220_85590289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ELMOD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315658    GT:AD:DP:GQ:PL    0/1:13,14:27:99:400,0,318
2    85622059    rs6886    T    C    161.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.621;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.666;QD=8.99;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=H314R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_85621346_85622081;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542681    GT:AD:DP:GQ:PL    0/1:10,8:18:99:192,0,325
2    85625439    rs11687035    T    G    161.18    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=26.86;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409275    GT:AD:DP:GQ:PL    0/1:1,5:6:21.25:191,0,21
2    85662650    rs6547618    A    G    383.44    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;MQRankSum=-0.612;QD=9.35;ReadPosRankSum=0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH2D6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340326    GT:AD:DP:GQ:PL    0/1:23,18:41:99:413,0,732
2    85663520    rs4832173    A    C    204.47    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.347;QD=10.22;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH2D6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340326    GT:AD:DP:GQ:PL    0/1:12,8:20:99:234,0,356
2    85769246    rs1078005    G    A    1350.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=35.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAT2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465151    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1384,108,0
2    85781318    rs1254896    T    G    4708.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=G222;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_85781266_85781429;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGCX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430215    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4708,343,0
2    85788140    rs1254898    C    T    1138.67    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=5.209;DB;DP=75;Dels=0.0;FS=7.703;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=0.946;QD=15.18;ReadPosRankSum=0.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGCX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233838    GT:AD:DP:GQ:PL    0/1:33,42:75:99:1169,0,964
2    85807081    .    AT    A    39.44    QDFilter2    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.179;DP=35;FS=0.0;HRun=16;HaplotypeScore=253.6668;IndelType=D;MQ=56.25;MQ0=0;MQRankSum=-0.835;QD=1.13;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263864    GT:AD:DP:GQ:PL    0/1:22,9:35:78.47:78,0,286
2    85819975    rs115723319    G    A    485.84    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.168;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=56.15;MQ0=0;MQRankSum=-0.408;QD=13.13;ReadPosRankSum=0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306384    GT:AD:DP:GQ:PL    0/1:16,21:37:99:516,0,291
2    85848747    rs67550241    CT    C    66.76    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=0.053;DB;DP=27;FS=0.0;HRun=15;HaplotypeScore=195.2301;IndelType=D;MQ=55.96;MQ0=0;MQRankSum=1.418;QD=2.47;ReadPosRankSum=1.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474572    GT:AD:DP:GQ:PL    0/1:17,10:27:99:106,0,163
2    85863394    rs4416212    C    T    198.66    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.285;QD=14.19;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323701    GT:AD:DP:GQ:PL    0/1:6,8:14:99:229,0,182
2    85874922    rs114783427    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493829    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    85890771    rs893159    T    G    74.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.59;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473692    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:104,0,30
2    85893741    rs1130866    G    A    504.57    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=-0.952;QD=16.28;ReadPosRankSum=0.288;SNPEFF_AMINO_ACID_CHANGE=T131I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_85893740_85893865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342375    GT:AD:DP:GQ:PL    0/1:13,18:31:99:535,0,369
2    85894308    rs3024798    G    T    438.83    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=40;Dels=0.0;FS=4.977;HRun=0;HaplotypeScore=2.2771;MQ=60.0;MQ0=0;MQRankSum=0.156;QD=10.97;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342375    GT:AD:DP:GQ:PL    0/1:23,17:40:99:469,0,735
2    85921389    rs1866139    G    C    117.82    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=14.73;ReadPosRankSum=0.322;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488945    GT:AD:DP:GQ:PL    0/1:3,5:8:99:148,0,102
2    85921992    rs2043760    T    C    76.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.12;ReadPosRankSum=-0.727;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_85921876_85922119;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409696    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:106,0,29
2    85924729    rs11127    C    T    420.57    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.489;QD=16.18;ReadPosRankSum=-1.363;SNPEFF_AMINO_ACID_CHANGE=T104I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_85924629_85924800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409696    GT:AD:DP:GQ:PL    0/1:12,14:26:99:451,0,374
2    85924899    rs1437742    T    A    96.12    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.62;QD=7.39;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464298    GT:AD:DP:GQ:PL    0/1:9,4:13:99:126,0,327
2    85925529    rs4240200    A    G    131.11    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=8.74;ReadPosRankSum=-0.984;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464298    GT:AD:DP:GQ:PL    0/1:8,7:15:99:161,0,299
2    85925667    rs4240201    G    A    971.28    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.698;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.27;QD=13.49;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464298    GT:AD:DP:GQ:PL    0/1:35,37:72:99:1001,0,990
2    85925680    rs4240202    T    G    952.79    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.005;DB;DP=72;Dels=0.0;FS=4.616;HRun=0;HaplotypeScore=1.6208;MQ=59.74;MQ0=0;MQRankSum=0.034;QD=13.23;ReadPosRankSum=-0.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464298    GT:AD:DP:GQ:PL    0/1:37,35:72:99:983,0,999
2    85925756    rs7908    C    G    365.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.539;QD=13.05;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464298    GT:AD:DP:GQ:PL    0/1:14,14:28:99:395,0,471
2    85925848    rs12845    C    G    40.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.51;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GNLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464298    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:71,0,28
2    85981761    rs17851881    T    C    58.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=5.84;ReadPosRankSum=-1.001;SNPEFF_AMINO_ACID_CHANGE=L150P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_85981017_85982080;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATOH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306279    GT:AD:DP:GQ:PL    0/1:6,3:10:88.40:88,0,220
2    86107840    rs11127008    G    A    574.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377332    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:607,45,0
2    86107951    rs113435928    GA    G    1624.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.841;DB;DP=76;FS=9.42;HRun=11;HaplotypeScore=416.9062;IndelType=D;MQ=61.65;MQ0=0;MQRankSum=0.396;QD=21.38;ReadPosRankSum=-0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377332    GT:AD:DP:GQ:PL    1/1:4,72:76:99:1667,178,0
2    86107987    rs11127009    T    C    3971.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.89;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377332    GT:AD:DP:GQ:PL    1/1:0,116:118:99:3971,304,0
2    86108218    rs6751743    T    C    574.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377332    GT:AD:DP:GQ:PL    1/1:0,19:19:54.13:608,54,0
2    86108254    rs12463901    T    G    272.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377332    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:306,24,0
2    86259443    rs2276626    C    T    803.52    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.69;MQ0=0;MQRankSum=0.726;QD=10.71;ReadPosRankSum=0.36;SNPEFF_AMINO_ACID_CHANGE=G1408;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86259395_86259505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:41,34:75:99:834,0,1287
2    86266274    rs2289237    C    G    110.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.77;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462078    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,106
2    86272758    rs1561328    G    A    1849.86    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.87;DB;DP=152;Dels=0.0;FS=0.623;HRun=1;HaplotypeScore=4.4444;MQ=59.21;MQ0=0;MQRankSum=-1.254;QD=12.17;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=L956;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86272740_86272892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:85,67:152:99:1880,0,2313
2    86280058    rs35625755    G    A    164.58    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.545;QD=8.66;ReadPosRankSum=0.068;SNPEFF_AMINO_ACID_CHANGE=A758;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86279940_86280123;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:10,9:19:99:195,0,209
2    86292656    rs311563    C    T    239.44    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.349;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.311;QD=9.58;ReadPosRankSum=0.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:16,9:25:99:269,0,458
2    86304934    rs72010138    GCACACACACACA    G    503.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=347.6413;IndelType=D;MQ=46.71;MQ0=0;QD=20.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424089    GT:AD:DP:GQ:PL    1/1:18,5:24:26.99:546,27,0
2    86305123    rs2288117    T    C    2149.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.41;MQ0=0;QD=32.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424089    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2182,166,0
2    86305534    rs74607112    T    C    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409024    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
2    86307884    rs138721680    CAG    C    228.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=45.5745;IndelType=D;MQ=60.77;MQ0=0;MQRankSum=0.545;QD=16.3;ReadPosRankSum=-0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409024    GT:AD:DP:GQ:PL    0/1:7,7:14:99:267,0,351
2    86310110    rs2288118    C    T    138.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.154;QD=9.92;ReadPosRankSum=-2.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409024    GT:AD:DP:GQ:PL    0/1:7,7:14:99:169,0,253
2    86315526    rs2288119    T    C    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,71
2    86315741    rs2288120    C    T    821.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.493;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.41;QD=13.04;ReadPosRankSum=-0.771;SNPEFF_AMINO_ACID_CHANGE=T226;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86315689_86315792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:36,27:63:99:851,0,1088
2    86316834    rs2288121    G    T    56.87    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.715;QD=5.17;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:8,3:11:86.86:87,0,281
2    86317037    rs4832242    G    C    503.17    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.457;DB;DP=48;Dels=0.0;FS=3.206;HRun=0;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;MQRankSum=1.164;QD=10.48;ReadPosRankSum=1.351;SNPEFF_AMINO_ACID_CHANGE=P150A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86316945_86317052;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:27,21:48:99:533,0,846
2    86326133    rs11127015    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    86332809    rs4832245    G    A    190.85    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.245;DB;DP=23;Dels=0.0;FS=2.315;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.709;QD=8.3;ReadPosRankSum=0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263857    GT:AD:DP:GQ:PL    0/1:16,7:23:99:221,0,360
2    86335718    rs979940    G    A    4347.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254630    GT:AD:DP:GQ:PL    1/1:0,116:116:99:4348,325,0
2    86343476    rs4832022    C    A    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.61;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488801    GT:AD:DP:GQ:PL    0/1:2,3:5:65.60:108,0,66
2    86343494    rs4832248    G    A    105.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=15.05;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488801    GT:AD:DP:GQ:PL    0/1:3,4:7:99:135,0,99
2    86344367    rs2059353    T    C    215.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409326    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
2    86346180    rs2303339    G    A    1030.30    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=67;Dels=0.0;FS=2.348;HRun=1;HaplotypeScore=2.5515;MQ=59.44;MQ0=0;MQRankSum=0.257;QD=15.38;ReadPosRankSum=1.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409326    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1060,0,1026
2    86346308    rs6715623    G    A    657.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=38.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409326    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:690,51,0
2    86352010    rs4832250    G    T    108.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.07;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409783    GT:AD:DP:GQ:PL    0/1:2,4:6:64.59:138,0,65
2    86352785    rs4618054    G    A    180.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=16.42;ReadPosRankSum=-1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409783    GT:AD:DP:GQ:PL    0/1:5,6:11:99:211,0,176
2    86352825    rs6740228    C    T    62.65    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=11;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=5.7;ReadPosRankSum=1.931;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409783    GT:AD:DP:GQ:PL    0/1:8,3:11:92.64:93,0,293
2    86359405    rs1559515    G    T    214.90    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.16;DB;DP=27;Dels=0.0;FS=5.78;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.716;QD=7.96;ReadPosRankSum=0.173;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480102    GT:AD:DP:GQ:PL    0/1:16,11:27:99:245,0,540
2    86360573    rs2241437    T    G    600.82    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.904;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.65;MQ0=0;MQRankSum=0.222;QD=9.24;ReadPosRankSum=-0.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464541    GT:AD:DP:GQ:PL    0/1:40,25:65:99:631,0,1301
2    86362204    rs7606421    C    T    568.32    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.381;QD=17.76;ReadPosRankSum=-0.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464541    GT:AD:DP:GQ:PL    0/1:13,19:32:99:598,0,403
2    86363074    rs3770069    A    G    311.30    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.513;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.153;QD=10.73;ReadPosRankSum=-0.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464541    GT:AD:DP:GQ:PL    0/1:16,13:29:99:341,0,438
2    86363855    rs7558040    G    C    324.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464541    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:357,27,0
2    86364706    rs111951768    TG    T    1061.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=3;HaplotypeScore=82.8165;IndelType=D;MQ=58.14;MQ0=0;QD=35.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464541    GT:AD:DP:GQ:PL    1/1:0,30:30:90.28:1104,90,0
2    86385728    rs1131071    C    T    453.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.064;DB;DP=54;Dels=0.0;FS=1.147;HRun=0;HaplotypeScore=2.5219;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=8.4;ReadPosRankSum=0.982;SNPEFF_AMINO_ACID_CHANGE=G284;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86385715_86385844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254636    GT:AD:DP:GQ:PL    0/1:36,18:54:99:483,0,1139
2    86385886    rs6739460    A    G    862.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409258    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:895,69,0
2    86393521    .    TA    T    926.86    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=4.615;DP=43;FS=4.367;HRun=1;HaplotypeScore=128.589;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=1.123;QD=21.55;ReadPosRankSum=0.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460081    GT:AD:DP:GQ:PL    0/1:16,27:43:99:966,0,597
2    86400703    .    C    CA    88.29    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DP=27;FS=0.0;HRun=13;HaplotypeScore=124.148;IndelType=I;MQ=57.81;MQ0=0;MQRankSum=-0.193;QD=3.27;ReadPosRankSum=0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254636    GT:AD:DP:GQ:PL    0/1:19,6:27:99:127,0,175
2    86400824    rs1050301    G    A    1585.57    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.909;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.88;QD=16.18;ReadPosRankSum=2.649;SNPEFF_AMINO_ACID_CHANGE=P124S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86400773_86400884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMMT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377310    GT:AD:DP:GQ:PL    0/1:45,53:98:99:1616,0,1320
2    86406556    rs17027011    C    T    965.99    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.625;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5832;MQ=59.02;MQ0=0;MQRankSum=0.919;QD=13.61;ReadPosRankSum=0.691;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86406556_86406745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377310    GT:AD:DP:GQ:PL    0/1:37,33:71:99:996,0,1078
2    86434569    rs9309634    T    C    347.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254644    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:381,30,0
2    86437551    rs7565645    T    G    406.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:440,36,0
2    86437898    rs13353    C    T    426.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:460,33,0
2    86440718    rs11944    T    C    91.49    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=8.32;ReadPosRankSum=1.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254644    GT:AD:DP:GQ:PL    0/1:7,4:11:99:121,0,192
2    86478869    rs4832030    A    C    101.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.68;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,135
2    86478902    rs10189492    G    A    179.39    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=17.94;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    0/1:3,7:10:59.91:209,0,60
2    86478980    rs4832031    T    C    399.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7753;MQ=59.17;MQ0=0;MQRankSum=0.482;QD=14.27;ReadPosRankSum=-1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    0/1:14,14:28:99:429,0,497
2    86479035    rs12988844    A    G    1296.68    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.113;DB;DP=73;Dels=0.0;FS=13.142;HRun=1;HaplotypeScore=1.9895;MQ=59.68;MQ0=0;MQRankSum=1.356;QD=17.76;ReadPosRankSum=1.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    0/1:33,40:73:99:1327,0,989
2    86479287    rs17438687    G    T    378.49    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.156;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.868;QD=27.03;ReadPosRankSum=0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    0/1:3,11:14:72.33:408,0,72
2    86481835    rs2276625    C    T    465.43    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=11.64;ReadPosRankSum=-0.325;SNPEFF_AMINO_ACID_CHANGE=T102;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86481817_86481937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453231    GT:AD:DP:GQ:PL    0/1:21,19:40:99:495,0,620
2    86491245    rs1863056    C    T    285.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=23.77;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    0/1:3,9:12:38.91:315,0,39
2    86509079    rs3821016    T    C    256.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:289,21,0
2    86509267    rs1863058    G    A    1659.98    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=138;Dels=0.0;FS=2.234;HRun=0;HaplotypeScore=0.8667;MQ=59.83;MQ0=0;MQRankSum=-1.16;QD=12.03;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    0/1:78,60:138:99:1690,0,2100
2    86509388    rs1863059    T    G    1017.33    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=3.009;DB;DP=65;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.9159;MQ=59.71;MQ0=0;MQRankSum=-0.591;QD=15.65;ReadPosRankSum=-1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000165698    GT:AD:DP:GQ:PL    0/1:31,34:65:99:1047,0,968
2    86683642    rs2030259    A    G    1149.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=I160V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86683565_86683689;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542128    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1182,87,0
2    86691250    rs12714187    G    A    2379.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=A254;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86691176_86691339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542128    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2412,178,0
2    86705565    rs2292887    T    C    65.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.42;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485171    GT:AD:DP:GQ:PL    0/1:4,3:7:95.95:96,0,131
2    86707313    rs61748134    G    A    1183.82    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=3.057;DB;DP=82;Dels=0.0;FS=3.007;HRun=1;HaplotypeScore=1.8519;MQ=57.42;MQ0=0;MQRankSum=-0.422;QD=14.44;ReadPosRankSum=0.097;SNPEFF_AMINO_ACID_CHANGE=P728;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_86707290_86707485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542128    GT:AD:DP:GQ:PL    0/1:40,42:82:99:1214,0,976
2    86707504    rs4832290    T    C    596.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312912    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:630,51,0
2    86716919    rs75816635    A    G    31.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.21;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462197    GT:AD:DP:GQ:PL    0/1:4,2:6:61.26:61,0,148
2    86734778    rs3731811    C    T    1916.51    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.444;DB;DP=143;DS;Dels=0.0;FS=1.573;HRun=0;HaplotypeScore=0.7887;MQ=59.68;MQ0=0;MQRankSum=-1.587;QD=13.4;ReadPosRankSum=-0.105;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF103-VPS24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440757    GT:AD:DP:GQ:PL    0/1:75,67:143:99:1946,0,2116
2    86737334    rs2276624    A    G    40.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF103-VPS24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440757    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,73
2    86737649    rs966477    G    A    930.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF103-VPS24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440757    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:963,72,0
2    86756209    rs1036940    C    G    386.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF103-VPS24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440757    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:419,30,0
2    86756280    rs9284788    G    A    495.76    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=3.23;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.087;QD=23.61;ReadPosRankSum=0.698;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF103-VPS24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440757    GT:AD:DP:GQ:PL    0/1:6,15:21:99:526,0,111
2    86769250    rs143733293    C    T    111.80    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.729;QD=12.42;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF103-VPS24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440757    GT:AD:DP:GQ:PL    0/1:4,5:9:99:142,0,147
2    86830876    rs3755000    C    A    170.89    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.564;DB;DP=19;Dels=0.0;FS=4.337;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=8.99;ReadPosRankSum=-0.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463333    GT:AD:DP:GQ:PL    0/1:12,7:19:99:201,0,415
2    86850022    rs396354    T    C    332.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439940    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:366,27,0
2    86998659    rs71377101    C    CT    37.27    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=42;FS=0.0;HRun=16;HaplotypeScore=289.5016;IndelType=I;MQ=56.0;MQ0=0;MQRankSum=-0.785;QD=0.89;ReadPosRankSum=0.343;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283632    GT:AD:DP:GQ:PL    0/1:30,6:42:76.30:76,0,240
2    87085598    rs28727404    T    C    50.43    QDFilter2    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.532;DB;DP=44;Dels=0.0;FS=2.5;HRun=0;HaplotypeScore=1.6208;MQ=48.76;MQ0=5;MQRankSum=-4.117;QD=1.15;ReadPosRankSum=-0.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331469    GT:AD:DP:GQ:PL    0/1:32,12:44:80.43:80,0,1098
2    87100186    rs7562997    A    G    37.30    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.25;MQ0=8;MQRankSum=0.358;QD=2.66;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC111200.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426186    GT:AD:DP:GQ:PL    0/1:10,4:14:57.39:67,0,57
2    87100519    rs150217372    A    T    517.85    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.707;DB;DP=47;Dels=0.0;FS=15.163;HRun=2;HaplotypeScore=0.0;MQ=47.33;MQ0=2;MQRankSum=-3.255;QD=11.02;ReadPosRankSum=0.514;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC111200.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426186    GT:AD:DP:GQ:PL    0/1:27,20:47:99:548,0,680
2    87105775    rs138608684    C    T    40.95    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.45;MQ0=4;MQRankSum=-1.977;QD=2.56;ReadPosRankSum=1.788;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC111200.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426186    GT:AD:DP:GQ:PL    0/1:8,8:16:70.94:71,0,150
2    87105886    rs149291892    T    G    465.30    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.33;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.13;MQ0=2;MQRankSum=1.298;QD=14.54;ReadPosRankSum=-1.166;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC111200.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426186    GT:AD:DP:GQ:PL    0/1:12,20:32:99:495,0,295
2    87157587    rs139263407    A    G    110.41    MQFilter40    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.702;DB;DP=43;Dels=0.0;FS=35.26;HRun=1;HaplotypeScore=0.0;MQ=28.31;MQ0=0;MQRankSum=2.732;QD=2.57;ReadPosRankSum=-0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398193    GT:AD:DP:GQ:PL    0/1:34,9:43:99:140,0,845
2    87169316    .    T    G    50.34    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=29.3;MQ0=1;MQRankSum=1.221;QD=5.59;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398193    GT:AD:DP:GQ:PL    0/1:6,3:9:41.27:80,0,41
2    87169471    .    C    G    40.31    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DP=10;Dels=0.0;FS=3.332;HRun=3;HaplotypeScore=0.0;MQ=36.45;MQ0=1;MQRankSum=-1.881;QD=4.03;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398193    GT:AD:DP:GQ:PL    0/1:6,4:10:70.30:70,0,107
2    87211874    rs191726137    T    C    289.69    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.103;DB;DP=63;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=1.6483;MQ=24.87;MQ0=34;MQRankSum=0.0;QD=4.6;ReadPosRankSum=-1.641;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398193    GT:AD:DP:GQ:PL    0/1:49,14:63:99:320,0,349
2    87276811    .    T    C    322.15    MQFilter40    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.616;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=25.46;MQ0=7;MQRankSum=0.07;QD=6.85;ReadPosRankSum=-1.278;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC125232.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452554    GT:AD:DP:GQ:PL    0/1:28,19:47:99:352,0,392
2    87345696    rs62144432    A    C    362.23    MQFilter40    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.516;DB;DP=98;Dels=0.0;FS=1.456;HRun=0;HaplotypeScore=0.0;MQ=20.91;MQ0=52;MQRankSum=-2.149;QD=3.7;ReadPosRankSum=1.804;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC092651.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426110    GT:AD:DP:GQ:PL    0/1:75,23:98:99:392,0,669
2    87352393    .    G    T    97.52    MQFilter40    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.514;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.17;MQ0=2;MQRankSum=-1.725;QD=4.24;ReadPosRankSum=1.162;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:11,12:23:99:128,0,218
2    87355912    .    C    T    51    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DP=63;Dels=0.0;FS=8.692;HRun=1;HaplotypeScore=0.0;MQ=44.54;MQ0=1;MQRankSum=-2.446;QD=0.81;ReadPosRankSum=-0.096;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:54,9:63:80.99:81,0,1507
2    87356024    rs3101261    C    A    115.89    MQFilter40    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.309;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.09;MQ0=1;MQRankSum=-0.662;QD=5.27;ReadPosRankSum=2.919;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:16,6:22:99:146,0,366
2    87356038    .    G    A    105.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.0;MQ0=0;MQRankSum=-1.545;QD=5.88;ReadPosRankSum=1.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:12,6:18:99:136,0,359
2    87356057    rs80344669    A    G    281.97    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.42;MQ0=0;MQRankSum=-2.793;QD=16.59;ReadPosRankSum=-1.318;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:5,12:17:99:312,0,147
2    87359129    rs149115575    G    A    88.56    MQFilter40;QDFilter2    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=59;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.9916;MQ=10.37;MQ0=52;MQRankSum=0.937;QD=1.5;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:44,15:59:77.36:119,0,77
2    87371246    rs191721057    A    G    296.99    MQFilter40    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=1.018;DB;DP=46;Dels=0.0;FS=3.628;HRun=0;HaplotypeScore=0.0;MQ=29.62;MQ0=16;MQRankSum=0.104;QD=6.46;ReadPosRankSum=0.894;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:31,15:46:99:327,0,433
2    87371260    .    T    C    276.34    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.601;DP=52;Dels=0.0;FS=6.314;HRun=0;HaplotypeScore=2.5764;MQ=26.29;MQ0=22;MQRankSum=-0.417;QD=5.31;ReadPosRankSum=1.338;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:34,17:52:99:306,0,402
2    87371339    rs148290079    C    T    186.38    MQFilter40    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.06;MQ0=31;MQRankSum=0.122;QD=3.65;ReadPosRankSum=-0.612;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:33,17:51:99:216,0,246
2    87376944    rs6547711    G    A    609.61    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=3.887;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.49;MQ0=2;MQRankSum=-1.351;QD=12.19;ReadPosRankSum=-2.382;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:26,24:50:99:640,0,677
2    87407207    .    C    A    236.10    MQFilter40    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.277;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.93;MQ0=87;MQRankSum=-0.072;QD=2.04;ReadPosRankSum=-0.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:80,36:116:99:266,0,106
2    87423433    rs67035907    G    A    31.97    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=-1.38;QD=5.33;ReadPosRankSum=0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:4,2:6:61.96:62,0,119
2    87423456    rs71247734    C    G    108.33    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.04;MQ0=2;MQRankSum=0.72;QD=13.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC083899.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454465    GT:AD:DP:GQ:PL    0/1:4,4:8:61.95:138,0,62
2    87565743    .    A    C    494.62    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DP=88;Dels=0.0;FS=5.705;HRun=0;HaplotypeScore=0.9159;MQ=43.55;MQ0=5;MQRankSum=-5.227;QD=5.62;ReadPosRankSum=-1.091;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC068279.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421835    GT:AD:DP:GQ:PL    0/1:57,31:88:99:525,0,1924
2    87607123    .    C    T    1652.41    MQFilter40    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.96;DP=163;Dels=0.0;FS=0.793;HRun=0;HaplotypeScore=10.8594;MQ=28.29;MQ0=59;MQRankSum=2.172;QD=10.14;ReadPosRankSum=-0.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC068279.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444323    GT:AD:DP:GQ:PL    0/1:64,90:163:99:1682,0,879
2    87607751    .    C    T    272.32    MQFilter40;QDFilter2    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=0.409;DP=206;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=7.14;MQ0=171;MQRankSum=-0.267;QD=1.32;ReadPosRankSum=-1.617;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC068279.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444323    GT:AD:DP:GQ:PL    0/1:110,96:206:99:302,0,100
2    87617811    rs79306919    T    A    42.75    MQFilter40    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.97;MQ0=10;MQRankSum=-0.72;QD=2.67;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,14:16:54.89:73,0,55
2    87820915    rs28513497    C    T    1780.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.29;MQ0=0;QD=32.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00152;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331944    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1813,144,0
2    88056464    rs11557204    T    C    360.12    MQFilter40    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.269;DB;DP=74;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=23.55;MQ0=17;MQRankSum=-0.186;QD=4.87;ReadPosRankSum=0.711;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327544    GT:AD:DP:GQ:PL    0/1:41,33:74:99:390,0,809
2    88058301    .    C    T    59.46    MQFilter40;QDFilter2    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.18;MQ0=88;MQRankSum=1.749;QD=0.6;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLGLB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359481    GT:AD:DP:GQ:PL    0/1:61,38:99:24.46:89,0,24
2    88058306    .    C    T    40.77    MQFilter40;QDFilter2    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=5.1;MQ0=91;MQRankSum=1.408;QD=0.4;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLGLB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359481    GT:AD:DP:GQ:PL    0/1:64,38:102:27.44:71,0,27
2    88058373    .    T    A    222.13    MQFilter40    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.416;DP=81;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=11.57;MQ0=53;MQRankSum=-0.302;QD=2.74;ReadPosRankSum=1.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLGLB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359481    GT:AD:DP:GQ:PL    0/1:42,39:81:99:252,0,164
2    88125093    .    G    C    52.94    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=32.94;MQ0=0;MQRankSum=1.221;QD=6.62;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327544    GT:AD:DP:GQ:PL    0/1:5,3:8:82.94:83,0,88
2    88125115    .    G    C    34.20    MQFilter40    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=27.22;MQ0=2;MQRankSum=0.623;QD=2.14;ReadPosRankSum=2.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327544    GT:AD:DP:GQ:PL    0/1:13,3:16:64.20:64,0,234
2    88272798    .    C    T    412.35    MQFilter40    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DP=58;Dels=0.0;FS=1.382;HRun=0;HaplotypeScore=2.2368;MQ=32.87;MQ0=6;MQRankSum=0.183;QD=7.11;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420840    GT:AD:DP:GQ:PL    0/1:35,23:58:99:442,0,619
2    88289207    rs5014698    G    A    557.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.23;MQ0=4;QD=25.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420840    GT:AD:DP:GQ:PL    1/1:0,22:22:54.12:590,54,0
2    88289368    rs10209326    G    A    872.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.22;MQ0=0;QD=31.15;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420840    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:905,69,0
2    88328163    rs35917852    C    CT    67.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=20;HaplotypeScore=221.735;IndelType=I;MQ=44.08;MQ0=0;QD=3.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347055    GT:AD:DP:GQ:PL    1/1:13,5:18:20.79:109,21,0
2    88328208    rs12328217    G    A    92.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=18.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347055    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:125,12,0
2    88387403    rs1542088    C    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=7.73;SNPEFF_AMINO_ACID_CHANGE=R113;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88387381_88387594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419482    GT:AD:DP:GQ:PL    1/1:3,3:6:6.02:78,6,0
2    88392964    .    AC    A    298.08    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DP=24;FS=0.0;HRun=3;HaplotypeScore=61.3686;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=12.42;ReadPosRankSum=-2.086;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468008    GT:AD:DP:GQ:PL    0/1:13,11:24:99:337,0,480
2    88396080    rs2919883    A    C    945.23    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.236;DB;DP=72;Dels=0.0;FS=7.371;HRun=0;HaplotypeScore=0.5784;MQ=59.74;MQ0=0;MQRankSum=0.641;QD=13.13;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295833    GT:AD:DP:GQ:PL    0/1:40,32:72:99:975,0,1156
2    88396120    rs2919882    G    A    1242.60    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.662;DB;DP=99;Dels=0.0;FS=5.132;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.069;QD=12.55;ReadPosRankSum=0.271;SNPEFF_AMINO_ACID_CHANGE=E222;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88396114_88396303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444564    GT:AD:DP:GQ:PL    0/1:54,45:99:99:1273,0,1665
2    88396123    rs2970912    C    G    1265.60    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=103;Dels=0.0;FS=2.564;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=1.753;QD=12.29;ReadPosRankSum=-0.03;SNPEFF_AMINO_ACID_CHANGE=L223;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88396114_88396303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444564    GT:AD:DP:GQ:PL    0/1:55,48:103:99:1296,0,1735
2    88396174    rs2919881    T    C    1033.52    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.956;DB;DP=95;Dels=0.0;FS=5.42;HRun=0;HaplotypeScore=1.7339;MQ=59.76;MQ0=0;MQRankSum=-0.675;QD=10.88;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=I240;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88396114_88396303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444564    GT:AD:DP:GQ:PL    0/1:52,43:95:99:1064,0,1717
2    88408172    rs2919858    A    G    237.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295833    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
2    88409879    rs142936938    C    T    71.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.5784;MQ=57.39;MQ0=0;MQRankSum=0.322;QD=7.94;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=R262W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88409873_88412900;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295833    GT:AD:DP:GQ:PL    0/1:5,3:9:99:101,0,135
2    88410102    rs2289497    C    G    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438570    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    88411793    rs2970888    C    A    461.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444564    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:495,39,0
2    88424066    rs2241883    T    C    2107.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=T94A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88424013_88424105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295834    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2140,156,0
2    88472791    rs4129190    G    A    1741.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=G41E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88470979_88472892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THNSL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324166    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1775,132,0
2    88472925    rs4129189    A    G    252.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.706;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7882;MQ=60.0;MQ0=0;MQRankSum=0.265;QD=14.05;ReadPosRankSum=-0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THNSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324166    GT:AD:DP:GQ:PL    0/1:9,9:18:99:283,0,288
2    88474370    rs2139100    A    G    1087.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THNSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419759    GT:AD:DP:GQ:PL    1/1:0,34:34:87.24:1121,87,0
2    88485392    rs1878810    G    C    166.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THNSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402102    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
2    88748390    rs4972212    A    T    1046.83    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=81;Dels=0.0;FS=1.973;HRun=0;HaplotypeScore=1.7262;MQ=59.72;MQ0=0;MQRankSum=-0.101;QD=12.92;ReadPosRankSum=0.082;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC012671.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398142    GT:AD:DP:GQ:PL    0/1:43,38:81:99:1077,0,1337
2    88751751    rs11456039    A    AG    183.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=17.7747;IndelType=I;MQ=55.21;MQ0=0;QD=36.62;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC012671.3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000428390    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
2    88870632    rs4972221    A    T    166.26    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.66;QD=12.79;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478003    GT:AD:DP:GQ:PL    0/1:7,6:13:99:196,0,253
2    88874891    rs1805165    C    A    1565.96    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=6.688;DB;DP=91;Dels=0.0;FS=1.288;HRun=0;HaplotypeScore=2.8807;MQ=59.75;MQ0=0;MQRankSum=1.406;QD=17.21;ReadPosRankSum=0.073;SNPEFF_AMINO_ACID_CHANGE=A553S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88874184_88874964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419748    GT:AD:DP:GQ:PL    0/1:43,48:91:99:1596,0,1264
2    88882942    rs6750998    T    A    905.17    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=12.93;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303236    GT:AD:DP:GQ:PL    0/1:38,32:70:99:935,0,1194
2    88895123    rs13045    T    C    596.57    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5215;MQ=59.57;MQ0=0;MQRankSum=0.26;QD=11.05;ReadPosRankSum=-1.336;SNPEFF_AMINO_ACID_CHANGE=Q15R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88894987_88895181;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419748    GT:AD:DP:GQ:PL    0/1:29,25:54:99:627,0,855
2    88895351    rs7571971    T    C    720.83    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.599;DB;DP=42;Dels=0.0;FS=8.123;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=17.16;ReadPosRankSum=0.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303236    GT:AD:DP:GQ:PL    0/1:15,27:42:99:751,0,470
2    88913273    rs867529    G    C    860.50    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.646;DB;DP=84;Dels=0.0;FS=5.913;HRun=0;HaplotypeScore=1.5661;MQ=59.28;MQ0=0;MQRankSum=1.096;QD=10.24;ReadPosRankSum=-1.057;SNPEFF_AMINO_ACID_CHANGE=S136C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_88913242_88913371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303236    GT:AD:DP:GQ:PL    0/1:49,35:84:99:890,0,1480
2    89100619    rs75347118    C    T    924.24    PASS    AB=0.665;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.004;DB;DP=231;Dels=0.0;FS=38.739;HRun=1;HaplotypeScore=6.0067;MQ=46.7;MQ0=1;MQRankSum=-11.913;QD=4.0;ReadPosRankSum=4.729;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:153,77:231:99:954,0,4745
2    89100657    rs78731551    G    A    1059.91    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=3.221;DB;DP=245;DS;Dels=0.0;FS=58.031;HRun=4;HaplotypeScore=3.1542;MQ=47.11;MQ0=1;MQRankSum=-11.868;QD=4.33;ReadPosRankSum=-2.152;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:162,82:245:99:1090,0,5038
2    89100697    rs76340865    C    G    1223.43    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=3.327;DB;DP=220;DS;Dels=0.0;FS=4.255;HRun=0;HaplotypeScore=8.4735;MQ=48.84;MQ0=0;MQRankSum=-10.819;QD=5.56;ReadPosRankSum=0.901;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:142,77:220:99:1253,0,4399
2    89100701    rs79584169    A    G    1162.23    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=5.96;DB;DP=226;DS;Dels=0.0;FS=5.29;HRun=0;HaplotypeScore=0.6651;MQ=48.8;MQ0=0;MQRankSum=-10.955;QD=5.14;ReadPosRankSum=2.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:146,79:226:99:1192,0,4305
2    89100725    rs75572943    G    A    1681.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.203;DB;DP=208;DS;Dels=0.0;FS=8.455;HRun=0;HaplotypeScore=0.9998;MQ=46.91;MQ0=0;MQRankSum=-10.916;QD=8.09;ReadPosRankSum=3.694;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:112,96:208:99:1712,0,3665
2    89100759    rs73956140    A    C    1100.51    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=181;DS;Dels=0.0;FS=7.548;HRun=0;HaplotypeScore=2.834;MQ=47.56;MQ0=1;MQRankSum=-10.041;QD=6.08;ReadPosRankSum=1.054;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:101,79:181:99:1131,0,3573
2    89100764    rs74666751    A    G    1036.16    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=6.79;DB;DP=172;DS;Dels=0.0;FS=1.462;HRun=1;HaplotypeScore=2.834;MQ=47.59;MQ0=2;MQRankSum=-9.969;QD=6.02;ReadPosRankSum=0.183;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:99,73:172:99:1066,0,3452
2    89100865    rs75849821    T    C    125.01    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.782;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.73;MQ0=0;MQRankSum=-3.134;QD=5.95;ReadPosRankSum=1.021;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:11,10:21:99:155,0,343
2    89102315    rs335126    G    T    975.83    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=4.362;DB;DP=82;Dels=0.0;FS=0.909;HRun=1;HaplotypeScore=7.4676;MQ=45.01;MQ0=8;MQRankSum=1.797;QD=11.9;ReadPosRankSum=0.509;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393515    GT:AD:DP:GQ:PL    0/1:46,36:82:99:1006,0,983
2    89292476    .    T    TTGTGC    510.03    PASS    AC=2;AF=1.00;AN=2;DP=20;FS=0.0;HRun=0;HaplotypeScore=325.7909;IndelType=I;MQ=37.12;MQ0=5;QD=15.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495489    GT:AD:DP:GQ:PL    1/1:9,12:20:41.87:552,42,0
2    89292477    .    T    G    190.48    HaplotypeScoreFilter13;MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=20.4078;MQ=37.12;MQ0=5;MQRankSum=1.001;QD=5.77;ReadPosRankSum=-3.905;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495489    GT:AD:DP:GQ:PL    0/1:20,8:33:99:220,0,186
2    89293273    rs2693237    T    G    400.48    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=106;Dels=0.0;FS=5.148;HRun=0;HaplotypeScore=1.7331;MQ=46.65;MQ0=16;MQRankSum=-6.188;QD=3.78;ReadPosRankSum=-0.276;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495489    GT:AD:DP:GQ:PL    0/1:66,40:106:99:430,0,2034
2    89512775    rs145409842    T    G    419.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.2;MQ0=0;QD=29.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498435    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:453,39,0
2    90007670    rs2847917    G    A    1144.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.09;MQ0=0;MQRankSum=1.208;QD=34.69;ReadPosRankSum=0.473;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV1D-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453184    GT:AD:DP:GQ:PL    1/1:1,32:33:87.27:1178,87,0
2    90008025    .    G    A    1507.59    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.614;DP=159;Dels=0.0;FS=13.176;HRun=0;HaplotypeScore=4.0684;MQ=45.94;MQ0=1;MQRankSum=-1.754;QD=9.48;ReadPosRankSum=0.988;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV1D-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453184    GT:AD:DP:GQ:PL    0/1:96,63:159:99:1538,0,2691
2    90008173    rs429681    T    C    301.77    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.791;DB;DP=50;Dels=0.0;FS=10.681;HRun=2;HaplotypeScore=0.0;MQ=43.41;MQ0=1;MQRankSum=-3.264;QD=6.04;ReadPosRankSum=-0.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV1D-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453184    GT:AD:DP:GQ:PL    0/1:35,15:50:99:332,0,1039
2    90008208    rs138920656    T    G    740.68    PASS    AB=0.212;AC=1;AF=0.50;AN=2;BaseQRankSum=1.279;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.0;MQ0=1;MQRankSum=1.424;QD=22.44;ReadPosRankSum=0.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV1D-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453184    GT:AD:DP:GQ:PL    0/1:7,26:33:99:771,0,110
2    90008287    rs147071425    A    C    208.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.62;MQ0=5;QD=17.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV1D-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453184    GT:AD:DP:GQ:PL    1/1:0,12:12:21.05:242,21,0
2    90043509    .    C    T    88.83    MQFilter40    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.13;MQ0=6;QD=8.88;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV2D-23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518179    GT:AD:DP:GQ:PL    1/1:4,6:10:12.02:121,12,0
2    90108416    rs859744    G    A    210.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV6D-41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390271    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
2    90108679    rs146434787    A    AT    354.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=9;HaplotypeScore=27.5392;IndelType=I;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV6D-41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390271    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:396,36,0
2    90108778    rs859745    G    T    385.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV6D-41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390271    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:418,33,0
2    90121675    rs7371197    T    C    1167.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=24.65;MQ0=9;QD=19.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1D-17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483379    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1201,111,0
2    90138961    rs2693251    C    G    34.20    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.46;MQ0=0;MQRankSum=-2.034;QD=2.85;ReadPosRankSum=-1.664;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC073416.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323194    GT:AD:DP:GQ:PL    0/1:9,3:12:64.19:64,0,323
2    90139116    .    G    A    1941.98    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DP=133;Dels=0.0;FS=1.409;HRun=0;HaplotypeScore=0.0;MQ=43.53;MQ0=1;MQRankSum=-4.483;QD=14.6;ReadPosRankSum=2.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1D-16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492446    GT:AD:DP:GQ:PL    0/1:54,77:133:99:1972,0,1329
2    90259695    rs33932272    A    G    196.28    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.504;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.28;MQ0=3;MQRankSum=-4.161;QD=5.45;ReadPosRankSum=1.603;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_90259593_90259828;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1D-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471857    GT:AD:DP:GQ:PL    0/1:16,20:36:99:226,0,526
2    90259710    rs57896409    A    C    166.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=4.017;DB;DP=42;Dels=0.0;FS=3.212;HRun=1;HaplotypeScore=1.4942;MQ=46.17;MQ0=2;MQRankSum=-4.9;QD=3.97;ReadPosRankSum=2.857;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_90259593_90259828;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1D-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471857    GT:AD:DP:GQ:PL    0/1:24,18:42:99:197,0,830
2    90259717    rs75674860    C    A    161.42    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.964;DB;DP=45;Dels=0.0;FS=3.323;HRun=0;HaplotypeScore=1.4942;MQ=46.36;MQ0=3;MQRankSum=-4.878;QD=3.59;ReadPosRankSum=2.178;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_90259593_90259828;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1D-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471857    GT:AD:DP:GQ:PL    0/1:26,19:45:99:191,0,910
2    90259734    rs61077279    C    A    99.77    QDFilter2    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=0.02;DB;DP=55;Dels=0.0;FS=3.444;HRun=0;HaplotypeScore=0.0;MQ=49.28;MQ0=3;MQRankSum=-5.453;QD=1.81;ReadPosRankSum=0.626;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_90259593_90259828;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGKV1D-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471857    GT:AD:DP:GQ:PL    0/1:37,18:55:99:130,0,1337
2    90414077    .    T    G    68.59    MQFilter40;QDFilter2    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.13;DP=37;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=3.8625;MQ=36.51;MQ0=1;MQRankSum=-2.614;QD=1.85;ReadPosRankSum=-1.646;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,12:37:98.59:99,0,291
2    90414086    .    A    G    44.68    MQFilter40;QDFilter2    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.127;DP=44;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=4.8763;MQ=35.86;MQ0=1;MQRankSum=-1.588;QD=1.02;ReadPosRankSum=0.404;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,6:44:74.68:75,0,575
2    90414152    .    A    G    1952.83    MQFilter40    AC=2;AF=1.00;AN=2;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.3309;MQ=33.29;MQ0=13;QD=18.78;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,93:104:99:1986,174,0
2    90414224    .    C    G    418.09    HaplotypeScoreFilter13;MQFilter40    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=44.7407;MQ=39.57;MQ0=1;MQRankSum=-3.074;QD=4.75;ReadPosRankSum=1.028;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:50,28:88:99:448,0,1379
2    90414241    .    A    G    286.45    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.765;DP=71;Dels=0.0;FS=1.339;HRun=3;HaplotypeScore=10.6467;MQ=37.54;MQ0=1;MQRankSum=-1.517;QD=4.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:50,20:71:99:316,0,1342
2    90414267    .    A    G    182.34    HaplotypeScoreFilter13;MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.562;DP=45;Dels=0.0;FS=4.41;HRun=1;HaplotypeScore=25.7755;MQ=34.46;MQ0=2;MQRankSum=-4.065;QD=4.05;ReadPosRankSum=-1.216;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,22:45:99:212,0,530
2    90414270    .    C    A    100.21    HaplotypeScoreFilter13;MQFilter40    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.972;DP=44;Dels=0.0;FS=2.634;HRun=1;HaplotypeScore=25.7755;MQ=34.4;MQ0=2;MQRankSum=-0.032;QD=2.28;ReadPosRankSum=0.875;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,9:44:99:130,0,586
2    90414282    .    A    C    75.22    HaplotypeScoreFilter13;MQFilter40    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.486;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=21.2885;MQ=35.44;MQ0=2;MQRankSum=-3.98;QD=2.03;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,17:37:99:105,0,521
2    90414337    .    T    C    30.69    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=10.7486;MQ=27.29;MQ0=1;MQRankSum=-2.313;QD=2.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,8:14:60.68:61,0,161
2    90458172    .    A    G    742.44    MQFilter40    AC=2;AF=1.00;AN=2;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.22;MQ0=13;QD=17.27;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:5,38:43:72.14:775,72,0
2    90458538    .    T    C    143.40    MQFilter40;QDFilter2    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6988;MQ=13.34;MQ0=98;MQRankSum=-0.274;QD=0.57;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:183,67:250:99:173,0,654
2    90458594    .    T    C    2067.13    MQFilter40    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.403;DP=250;DS;Dels=0.0;FS=7.204;HRun=0;HaplotypeScore=0.734;MQ=27.01;MQ0=29;MQRankSum=-1.921;QD=8.27;ReadPosRankSum=0.62;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:131,119:250:99:2097,0,2453
2    90458606    .    C    T    196.94    MQFilter40;QDFilter2    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.651;DP=250;DS;Dels=0.0;FS=4.862;HRun=0;HaplotypeScore=0.734;MQ=27.41;MQ0=21;MQRankSum=-1.069;QD=0.79;ReadPosRankSum=-0.147;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:214,35:250:99:227,0,4641
2    90458745    .    T    C    500.20    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.129;DP=182;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2064;MQ=16.1;MQ0=49;MQRankSum=0.865;QD=2.75;ReadPosRankSum=0.171;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:111,71:182:99:530,0,769
2    90458792    .    G    C    43.03    MQFilter40;QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.059;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=16.11;MQ0=23;MQRankSum=1.8;QD=0.57;ReadPosRankSum=-1.93;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:64,11:75:73.03:73,0,527
2    90464641    .    G    A    80.66    MQFilter40    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.274;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.67;MQ0=7;MQRankSum=0.085;QD=3.67;ReadPosRankSum=2.123;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,16:22:8.69:110,0,9
2    90464714    .    C    T    395.19    MQFilter40    AB=0.352;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.223;DP=105;Dels=0.0;FS=10.017;HRun=2;HaplotypeScore=0.734;MQ=18.72;MQ0=29;MQRankSum=-2.724;QD=3.76;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,68:105:99:425,0,351
2    90464785    .    C    T    360.21    MQFilter40    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.022;DP=121;Dels=0.0;FS=0.995;HRun=1;HaplotypeScore=3.3664;MQ=26.44;MQ0=13;MQRankSum=-0.812;QD=2.98;ReadPosRankSum=2.385;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:87,33:121:99:390,0,1551
2    90464845    .    C    CA    67.57    QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=1.662;DP=42;FS=0.0;HRun=9;HaplotypeScore=233.1761;IndelType=I;MQ=25.85;MQ0=10;MQRankSum=-0.262;QD=1.15;ReadPosRankSum=-1.779;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:50,9:42:99:107,0,248
2    90464855    rs71218065    C    A    283.10    HaplotypeScoreFilter13;MQFilter40    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.778;DB;DP=47;Dels=0.02;FS=0.0;HRun=9;HaplotypeScore=13.468;MQ=24.55;MQ0=12;MQRankSum=0.724;QD=5.9;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:18,29:47:99:313,0,251
2    91678818    .    G    A    109.84    MQFilter40;QDFilter2    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=2.4;DP=122;Dels=0.0;FS=2.442;HRun=1;HaplotypeScore=0.9789;MQ=21.23;MQ0=45;MQRankSum=-0.069;QD=0.9;ReadPosRankSum=1.035;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405516    GT:AD:DP:GQ:PL    0/1:89,33:122:99:140,0,1215
2    91678825    .    G    A    177.78    MQFilter40;QDFilter2    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=4.018;DP=139;Dels=0.0;FS=2.402;HRun=1;HaplotypeScore=1.9258;MQ=23.46;MQ0=44;MQRankSum=-0.049;QD=1.28;ReadPosRankSum=0.413;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405516    GT:AD:DP:GQ:PL    0/1:102,37:139:99:208,0,1626
2    91678867    rs79383010    A    T    2657.22    HaplotypeScoreFilter13;MQFilter40    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.186;DB;DP=250;DS;Dels=0.0;FS=6.725;HRun=0;HaplotypeScore=30.7842;MQ=27.58;MQ0=39;MQRankSum=-2.801;QD=10.63;ReadPosRankSum=1.401;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405516    GT:AD:DP:GQ:PL    0/1:73,168:250:99:2687,0,1128
2    91678874    .    G    A    86.33    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=5.162;DP=250;DS;Dels=0.0;FS=4.333;HRun=1;HaplotypeScore=86.4686;MQ=29.02;MQ0=30;MQRankSum=-2.111;QD=0.35;ReadPosRankSum=0.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405516    GT:AD:DP:GQ:PL    0/1:216,33:250:99:116,0,4523
2    91678879    rs75128484    T    C    3569.86    HaplotypeScoreFilter13;MQFilter40    AB=0.309;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.051;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=33.139;MQ=28.59;MQ0=33;MQRankSum=-0.027;QD=14.28;ReadPosRankSum=0.331;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405516    GT:AD:DP:GQ:PL    0/1:76,170:250:99:3570,0,992
2    91678903    rs80029187    A    G    607.69    HaplotypeScoreFilter13;MQFilter40    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.293;DB;DP=250;DS;Dels=0.0;FS=1.763;HRun=0;HaplotypeScore=17.2786;MQ=30.28;MQ0=23;MQRankSum=-1.282;QD=2.43;ReadPosRankSum=2.588;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455863    GT:AD:DP:GQ:PL    0/1:185,65:250:99:638,0,4120
2    91678924    .    C    T    56.77    MQFilter40;QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DP=250;DS;Dels=0.0;FS=1.003;HRun=1;HaplotypeScore=6.2159;MQ=26.91;MQ0=44;MQRankSum=-0.813;QD=0.23;ReadPosRankSum=-0.836;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455863    GT:AD:DP:GQ:PL    0/1:213,36:250:86.76:87,0,3965
2    91679044    rs145372481    A    G    2694.42    MQFilter40    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.158;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5585;MQ=23.99;MQ0=22;MQRankSum=1.609;QD=10.78;ReadPosRankSum=-1.004;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455863    GT:AD:DP:GQ:PL    0/1:104,146:250:99:2724,0,1667
2    91679240    rs147662755    T    C    93.86    MQFilter40;QDFilter2    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=237;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=7.27;MQ0=185;MQRankSum=0.117;QD=0.4;ReadPosRankSum=-1.112;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018696.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405516    GT:AD:DP:GQ:PL    0/1:171,66:237:99:124,0,171
2    91711962    rs140168684    C    A    236.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.94;MQ0=4;QD=13.91;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,15:17:32.94:270,33,0
2    91711974    rs146923535    A    G    386.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.44;MQ0=3;QD=19.33;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,19:20:50.92:420,51,0
2    91712014    rs138586851    C    A    399.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.06;MQ0=3;QD=16.65;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,22:24:47.96:433,48,0
2    91712947    rs1668811    A    G    88.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.6;MQ0=21;QD=3.41;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,26:26:12.02:121,12,0
2    91713016    rs2637066    G    A    96.63    MQFilter40    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.65;MQ0=9;MQRankSum=-0.956;QD=5.68;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,9:17:71.30:127,0,71
2    91766609    rs56138505    G    A    173.87    QDFilter2    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.965;DB;DP=103;Dels=0.0;FS=1.184;HRun=0;HaplotypeScore=3.5594;MQ=51.2;MQ0=0;MQRankSum=-1.871;QD=1.69;ReadPosRankSum=-0.765;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC018696.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454518    GT:AD:DP:GQ:PL    0/1:88,15:103:99:204,0,2696
2    91777622    rs1868874    A    G    89.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=0.55;QD=12.83;ReadPosRankSum=-0.937;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:3,4:7:96.83:120,0,97
2    91777703    rs4082168    A    G    159.82    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=21;Dels=0.0;FS=4.738;HRun=1;HaplotypeScore=0.9983;MQ=46.76;MQ0=0;MQRankSum=-1.162;QD=7.61;ReadPosRankSum=-0.669;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:11,10:21:99:190,0,375
2    91777718    rs1868875    C    T    157.23    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=21;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.9578;MQ=44.61;MQ0=0;MQRankSum=-1.34;QD=7.49;ReadPosRankSum=1.774;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:13,8:21:99:187,0,405
2    91777739    rs4518004    T    A    302.33    MQFilter40    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.252;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.01;MQ0=3;MQRankSum=2.019;QD=9.75;ReadPosRankSum=-0.348;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:19,12:31:99:332,0,376
2    91777844    rs112386667    AGATGCTGTG    A    1170.60    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=4.951;DB;DP=40;FS=5.188;HRun=0;HaplotypeScore=341.8964;IndelType=D;MQ=43.25;MQ0=0;MQRankSum=-4.572;QD=26.6;ReadPosRankSum=0.086;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:28,16:40:99:1210,0,2447
2    91777902    rs2647769    C    T    56.51    QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=34;Dels=0.0;FS=5.383;HRun=0;HaplotypeScore=0.0;MQ=42.53;MQ0=0;MQRankSum=-2.146;QD=1.66;ReadPosRankSum=1.739;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:28,6:34:86.51:87,0,792
2    91777983    rs2558001    T    C    107.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.517;DB;DP=14;Dels=0.0;FS=4.15;HRun=0;HaplotypeScore=0.0;MQ=45.4;MQ0=0;MQRankSum=0.839;QD=7.7;ReadPosRankSum=0.065;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:8,6:14:99:138,0,240
2    91777987    rs2558000    T    C    78.90    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=13;Dels=0.0;FS=4.15;HRun=2;HaplotypeScore=0.0;MQ=46.42;MQ0=0;MQRankSum=0.696;QD=6.07;ReadPosRankSum=0.696;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:8,5:13:99:109,0,250
2    91795325    rs1640026    A    G    204.86    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6635;MQ=54.02;MQ0=0;MQRankSum=0.546;QD=20.49;ReadPosRankSum=-0.895;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:3,7:10:56.38:235,0,56
2    91795381    rs4244683    A    C    708.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=33.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:741,57,0
2    91795593    rs144493896    CCAACT    C    5636.26    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=8.458;DB;DP=216;DS;FS=1.082;HRun=0;HaplotypeScore=1243.647;IndelType=D;MQ=55.7;MQ0=0;MQRankSum=0.152;QD=25.97;ReadPosRankSum=2.916;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:115,102:216:99:5636,0,9089
2    91795675    rs4337515    A    G    3775.55    PASS    AB=0.122;AC=1;AF=0.50;AN=2;BaseQRankSum=3.811;DB;DP=149;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=55.24;MQ0=3;MQRankSum=-1.358;QD=25.34;ReadPosRankSum=-0.339;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:18,130:149:99:3776,0,237
2    91795739    rs4637168    T    C    2719.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=55.06;MQ0=1;QD=34.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    1/1:0,77:78:99:2752,214,0
2    91809039    rs1649490    G    A    39.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=9.81;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:2,2:4:42.25:69,0,42
2    91809227    rs2536993    A    G    1039.32    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.385;DB;DP=124;Dels=0.0;FS=6.336;HRun=0;HaplotypeScore=5.1747;MQ=54.02;MQ0=3;MQRankSum=-2.4;QD=8.38;ReadPosRankSum=-0.321;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:67,56:124:99:1069,0,2102
2    91809324    rs2536994    C    T    1409.17    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=4.696;DB;DP=183;Dels=0.0;FS=3.031;HRun=0;HaplotypeScore=3.7821;MQ=49.3;MQ0=14;MQRankSum=-8.111;QD=7.66;ReadPosRankSum=0.279;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:98,85:183:99:1439,0,2737
2    91809385    rs55812636    C    G    1010.94    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=150;Dels=0.0;FS=23.774;HRun=1;HaplotypeScore=4.4224;MQ=47.95;MQ0=10;MQRankSum=-8.065;QD=6.74;ReadPosRankSum=2.569;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:80,69:150:99:1041,0,2594
2    91809404    rs55918232    G    C    957.92    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=126;Dels=0.0;FS=22.528;HRun=0;HaplotypeScore=0.0;MQ=48.82;MQ0=7;MQRankSum=-7.982;QD=7.6;ReadPosRankSum=2.691;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:66,60:126:99:988,0,2155
2    91809456    rs2191971    T    G    117.94    QDFilter2    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=89;Dels=0.0;FS=17.864;HRun=2;HaplotypeScore=1.9692;MQ=50.74;MQ0=5;MQRankSum=-6.818;QD=1.33;ReadPosRankSum=-3.302;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:62,27:89:99:148,0,1951
2    91809472    rs55833633    G    GTGACTAACAA    1358.02    PASS    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=2.151;DB;DP=68;FS=0.0;HRun=0;HaplotypeScore=603.8556;IndelType=I;MQ=51.9;MQ0=0;MQRankSum=-4.921;QD=17.41;ReadPosRankSum=-2.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC116050.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443031    GT:AD:DP:GQ:PL    0/1:68,6:68:99:1397,0,5273
2    91825095    rs145670113    C    T    1287.86    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DB;DP=86;Dels=0.0;FS=1.018;HRun=0;HaplotypeScore=0.9867;MQ=41.62;MQ0=8;MQRankSum=-1.615;QD=14.98;ReadPosRankSum=1.397;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC027612.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271699    GT:AD:DP:GQ:PL    0/1:32,54:86:99:1318,0,931
2    91843471    rs113954000    C    T    60.13    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.756;DB;DP=103;Dels=0.0;FS=6.819;HRun=0;HaplotypeScore=1.4538;MQ=44.98;MQ0=7;MQRankSum=-3.159;QD=0.58;ReadPosRankSum=0.407;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC027612.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000271699    GT:AD:DP:GQ:PL    0/1:89,14:103:90.12:90,0,2465
2    91872387    rs143194447    C    G    40.58    MQFilter40    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.1;MQ0=1;MQRankSum=0.636;QD=2.71;ReadPosRankSum=0.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:11,4:15:70.57:71,0,244
2    91872493    rs28569830    T    C    78.60    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=33;Dels=0.0;FS=2.307;HRun=0;HaplotypeScore=0.0;MQ=18.79;MQ0=13;MQRankSum=1.361;QD=2.38;ReadPosRankSum=-0.619;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:22,11:33:99:109,0,256
2    91872554    .    T    G    105.03    MQFilter40;QDFilter2    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.0;FS=5.905;HRun=2;HaplotypeScore=0.0;MQ=32.51;MQ0=18;MQRankSum=-2.036;QD=1.57;ReadPosRankSum=-1.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:37,30:67:99:135,0,1111
2    91872651    rs141428787    T    C    1038.15    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.66;MQ0=60;MQRankSum=-1.632;QD=7.99;ReadPosRankSum=0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    1/1:1,129:130:80.15:1071,80,0
2    91872704    rs62144186    G    A    76.50    MQFilter40;QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=180;Dels=0.0;FS=4.046;HRun=0;HaplotypeScore=2.362;MQ=27.34;MQ0=49;MQRankSum=-1.798;QD=0.42;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:145,35:180:99:106,0,2668
2    91872807    rs62144187    G    A    657.80    MQFilter40    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.91;DB;DP=154;Dels=0.0;FS=16.414;HRun=0;HaplotypeScore=0.6651;MQ=32.09;MQ0=18;MQRankSum=-1.281;QD=4.27;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:112,42:154:99:688,0,2319
2    91872945    .    A    G    32.58    MQFilter40;QDFilter2    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.639;DP=119;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=6.8061;MQ=33.99;MQ0=39;MQRankSum=-6.007;QD=0.27;ReadPosRankSum=-2.757;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:61,58:119:62.57:63,0,1791
2    91873005    rs77587901    C    T    303.59    MQFilter40    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=3.408;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=34.35;MQ0=23;MQRankSum=-2.587;QD=3.41;ReadPosRankSum=0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:66,23:89:99:334,0,1196
2    91873013    rs78077197    T    G    421.09    MQFilter40    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=2.458;DB;DP=85;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=33.33;MQ0=21;MQRankSum=-2.372;QD=4.95;ReadPosRankSum=0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:57,27:85:99:451,0,1110
2    91873025    rs139222171    C    T    505.44    MQFilter40    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=88;Dels=0.0;FS=1.058;HRun=1;HaplotypeScore=1.5774;MQ=33.34;MQ0=18;MQRankSum=-2.022;QD=5.74;ReadPosRankSum=2.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:59,29:88:99:535,0,1083
2    91873118    .    G    A    274.88    MQFilter40    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=2.224;DP=67;Dels=0.0;FS=6.452;HRun=1;HaplotypeScore=0.0;MQ=28.89;MQ0=13;MQRankSum=0.488;QD=4.1;ReadPosRankSum=0.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:49,18:67:99:305,0,827
2    91873133    .    G    A    189.95    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.498;DP=60;Dels=0.0;FS=12.527;HRun=0;HaplotypeScore=0.0;MQ=27.47;MQ0=14;MQRankSum=1.132;QD=3.17;ReadPosRankSum=-0.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC027612.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328341    GT:AD:DP:GQ:PL    0/1:45,15:60:99:220,0,645
2    91873972    .    C    T    43.42    MQFilter40    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.48;MQ0=1;QD=14.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:75,6,0
2    91884576    rs4041772    T    C    126.96    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=35;Dels=0.0;FS=5.654;HRun=0;HaplotypeScore=0.7887;MQ=47.44;MQ0=0;MQRankSum=-3.227;QD=3.63;ReadPosRankSum=-1.189;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:26,9:35:99:157,0,880
2    91885883    .    T    C    159.83    MQFilter40    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=1.305;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6655;MQ=37.94;MQ0=8;MQRankSum=-4.546;QD=2.28;ReadPosRankSum=-0.909;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:44,25:70:99:190,0,1436
2    91886030    .    GAA    G    645.98    PASS    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=4.278;DP=151;FS=2.102;HRun=12;HaplotypeScore=701.8775;IndelType=D;MQ=39.9;MQ0=10;MQRankSum=-6.604;QD=3.73;ReadPosRankSum=2.542;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:125,46:151:99:685,0,4420
2    91886070    .    A    G    857.73    MQFilter40    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=3.328;DP=124;Dels=0.0;FS=3.068;HRun=0;HaplotypeScore=2.8284;MQ=38.07;MQ0=5;MQRankSum=1.115;QD=6.92;ReadPosRankSum=-0.324;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:86,36:124:99:888,0,2192
2    91886089    rs148032706    C    T    259.02    MQFilter40    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=36.57;MQ0=6;MQRankSum=-5.03;QD=3.5;ReadPosRankSum=0.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:49,24:74:99:289,0,1535
2    91887842    rs78921039    T    C    84.19    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.22;MQ0=1;MQRankSum=-0.919;QD=5.26;ReadPosRankSum=2.266;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:11,5:16:99:114,0,309
2    91887961    .    G    A    138.43    MQFilter40;QDFilter2    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DP=96;Dels=0.0;FS=1.531;HRun=1;HaplotypeScore=1.3123;MQ=26.59;MQ0=44;MQRankSum=0.744;QD=1.44;ReadPosRankSum=-1.798;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:86,10:96:99:168,0,846
2    91888125    .    C    T    81.83    MQFilter40;QDFilter2    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=7.43;MQ0=109;MQRankSum=0.717;QD=0.68;ReadPosRankSum=0.143;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:84,36:120:74.39:112,0,74
2    91888374    rs150617818    A    G    81.85    MQFilter40;QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.723;DB;DP=93;Dels=0.0;FS=7.829;HRun=0;HaplotypeScore=2.6451;MQ=28.37;MQ0=6;MQRankSum=-1.386;QD=0.88;ReadPosRankSum=0.036;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:78,15:93:99:112,0,1755
2    91888456    rs142484459    C    A    670.54    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.044;DB;DP=99;Dels=0.0;FS=11.772;HRun=2;HaplotypeScore=0.5784;MQ=29.09;MQ0=8;MQRankSum=0.079;QD=6.77;ReadPosRankSum=-0.196;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:56,42:99:99:701,0,1251
2    91893801    .    A    C    144.91    MQFilter40;QDFilter2    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.171;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8499;MQ=13.71;MQ0=73;MQRankSum=-2.355;QD=0.92;ReadPosRankSum=-0.469;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:104,53:157:99:175,0,806
2    91894137    .    A    G    187.39    MQFilter40    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.561;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=24.18;MQ0=15;MQRankSum=-0.051;QD=2.43;ReadPosRankSum=-0.512;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:57,20:77:99:217,0,978
2    91894194    rs141864677    C    T    323.92    MQFilter40    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.289;DB;DP=95;Dels=0.0;FS=2.232;HRun=0;HaplotypeScore=0.0;MQ=24.25;MQ0=15;MQRankSum=-0.743;QD=3.41;ReadPosRankSum=0.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:64,31:95:99:354,0,1120
2    91899588    .    A    G    102.85    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.55;MQ0=1;QD=20.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:135,12,0
2    91899924    .    A    T    43.73    MQFilter40;QDFilter2    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DP=72;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=9.46;MQ0=62;MQRankSum=-2.45;QD=0.61;ReadPosRankSum=0.336;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC027612.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436174    GT:AD:DP:GQ:PL    0/1:47,25:72:73.72:74,0,119
2    91924698    rs2089351    G    C    34.20    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.31;MQ0=0;MQRankSum=-2.647;QD=2.44;ReadPosRankSum=0.311;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC027612.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445234    GT:AD:DP:GQ:PL    0/1:11,3:14:64.20:64,0,298
2    91924782    rs28380329    C    A    391.43    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.079;DB;DP=40;Dels=0.0;FS=11.621;HRun=1;HaplotypeScore=0.5784;MQ=46.46;MQ0=1;MQRankSum=-3.799;QD=9.79;ReadPosRankSum=0.695;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC027612.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445234    GT:AD:DP:GQ:PL    0/1:22,18:40:99:421,0,692
2    91924804    rs925176    T    C    589.49    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=51;Dels=0.0;FS=18.73;HRun=0;HaplotypeScore=0.0;MQ=44.62;MQ0=1;MQRankSum=-4.613;QD=11.56;ReadPosRankSum=1.966;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC027612.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445234    GT:AD:DP:GQ:PL    0/1:27,24:51:99:619,0,859
2    91925022    rs28577290    C    A    301.22    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.254;DB;DP=56;Dels=0.0;FS=1.81;HRun=1;HaplotypeScore=0.0;MQ=24.75;MQ0=15;MQRankSum=-0.468;QD=5.38;ReadPosRankSum=0.227;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC027612.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445234    GT:AD:DP:GQ:PL    0/1:36,20:56:99:331,0,562
2    92031108    .    A    G    63.82    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DP=14;Dels=0.0;FS=9.792;HRun=1;HaplotypeScore=0.0;MQ=50.28;MQ0=0;MQRankSum=-3.067;QD=4.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445663    GT:AD:DP:GQ:PL    0/1:9,5:14:93.81:94,0,298
2    92031111    .    T    C    63.82    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DP=14;Dels=0.0;FS=9.792;HRun=0;HaplotypeScore=0.0;MQ=50.28;MQ0=0;MQRankSum=-3.067;QD=4.56;ReadPosRankSum=-0.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445663    GT:AD:DP:GQ:PL    0/1:9,5:14:93.81:94,0,298
2    92031125    rs77564203    G    A    33.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=15;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.9987;MQ=48.33;MQ0=1;MQRankSum=-2.855;QD=2.23;ReadPosRankSum=-1.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445663    GT:AD:DP:GQ:PL    0/1:9,6:15:63.39:63,0,296
2    92031179    rs75069572    G    A    53.21    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.02;MQ0=1;MQRankSum=-2.637;QD=4.09;ReadPosRankSum=-0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445663    GT:AD:DP:GQ:PL    0/1:7,6:13:83.20:83,0,193
2    92031184    rs77844773    G    A    92.32    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.3;MQ0=1;MQRankSum=-3.016;QD=6.15;ReadPosRankSum=0.101;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445663    GT:AD:DP:GQ:PL    0/1:8,7:15:99:122,0,217
2    92031253    rs72936134    G    T    126.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=14;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=45.44;MQ0=0;MQRankSum=-3.016;QD=9.05;ReadPosRankSum=1.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445663    GT:AD:DP:GQ:PL    0/1:7,7:14:99:157,0,191
2    92031291    rs75005588    A    C    31.70    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=0.0;MQ=46.55;MQ0=0;MQRankSum=-2.52;QD=2.88;ReadPosRankSum=-1.246;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445663    GT:AD:DP:GQ:PL    0/1:7,4:11:61.69:62,0,216
2    92075497    .    A    AGC    66.82    QDFilter2    AB=0.961;AC=1;AF=0.50;AN=2;BaseQRankSum=5.794;DP=197;FS=13.427;HRun=0;HaplotypeScore=691.552;IndelType=I;MQ=50.23;MQ0=1;MQRankSum=-5.608;QD=0.34;ReadPosRankSum=-0.093;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:191,8:197:99:106,0,8237
2    92075583    rs11240888    C    T    274.84    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=3.766;DB;DP=248;DS;Dels=0.0;FS=13.627;HRun=2;HaplotypeScore=14.1734;MQ=36.24;MQ0=43;MQRankSum=-4.179;QD=1.11;ReadPosRankSum=0.474;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:208,40:248:99:305,0,4522
2    92075596    rs11240889    C    T    351.14    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.569;DB;DP=250;DS;Dels=0.0;FS=9.063;HRun=0;HaplotypeScore=15.829;MQ=35.11;MQ0=43;MQRankSum=-3.566;QD=1.4;ReadPosRankSum=0.182;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:206,44:250:99:381,0,4655
2    92075615    rs111681132    A    G    535.37    HaplotypeScoreFilter13;MQFilter40    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.189;DB;DP=228;DS;Dels=0.0;FS=3.389;HRun=1;HaplotypeScore=19.5348;MQ=38.43;MQ0=28;MQRankSum=-4.337;QD=2.35;ReadPosRankSum=0.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:181,47:228:99:565,0,4318
2    92075618    rs113086124    T    C    509.25    HaplotypeScoreFilter13;MQFilter40    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=3.639;DB;DP=218;DS;Dels=0.0;FS=2.504;HRun=0;HaplotypeScore=32.2906;MQ=38.97;MQ0=27;MQRankSum=-4.328;QD=2.34;ReadPosRankSum=0.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:172,45:218:99:539,0,4121
2    92075681    rs11240890    G    C    331.83    MQFilter40    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=141;DS;Dels=0.0;FS=2.895;HRun=3;HaplotypeScore=1.8188;MQ=38.84;MQ0=28;MQRankSum=-3.628;QD=2.35;ReadPosRankSum=-1.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:108,33:141:99:362,0,2554
2    92076665    rs76918554    A    T    30.73    QDFilter2    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4272;MQ=47.99;MQ0=4;MQRankSum=-4.292;QD=0.73;ReadPosRankSum=1.545;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:29,13:42:60.72:61,0,1014
2    92076698    rs181746631    T    C    45.16    QDFilter2    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.18;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1765;MQ=48.57;MQ0=1;MQRankSum=-3.472;QD=1.61;ReadPosRankSum=0.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:19,9:28:75.15:75,0,579
2    92080283    rs79677867    T    G    31.85    MQFilter40;QDFilter2    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.419;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.33;MQ0=6;MQRankSum=-0.608;QD=1.1;ReadPosRankSum=-0.608;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:25,4:29:61.84:62,0,524
2    92080359    rs62151914    T    C    42.57    MQFilter40;QDFilter2    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=1.26;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9191;MQ=19.1;MQ0=37;MQRankSum=-0.834;QD=0.58;ReadPosRankSum=1.881;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:56,18:74:72.57:73,0,609
2    92080363    rs146803324    T    C    33.59    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.485;DB;DP=76;Dels=0.0;FS=2.508;HRun=0;HaplotypeScore=4.9191;MQ=19.28;MQ0=36;MQRankSum=-0.997;QD=0.44;ReadPosRankSum=1.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:57,19:76:63.58:64,0,670
2    92080656    rs149545478    T    C    53.58    MQFilter40;QDFilter2    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=1.646;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.45;MQ0=0;MQRankSum=-2.779;QD=1.45;ReadPosRankSum=-0.619;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:28,9:37:83.58:84,0,638
2    92080686    rs146723204    C    G    91.97    MQFilter40    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=26;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=3.9389;MQ=23.1;MQ0=3;MQRankSum=0.871;QD=3.54;ReadPosRankSum=-1.388;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:17,9:26:99:122,0,337
2    92101901    rs79845517    A    G    154.86    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.315;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.7;MQ0=9;MQRankSum=-1.599;QD=5.0;ReadPosRankSum=1.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:18,13:31:99:185,0,215
2    92101935    .    CT    C    898.69    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=5.263;DP=47;FS=0.0;HRun=3;HaplotypeScore=142.5551;IndelType=D;MQ=17.99;MQ0=30;MQRankSum=-0.558;QD=10.83;ReadPosRankSum=0.471;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:48,35:47:99:938,0,637
2    92102168    rs4927413    C    T    1928.31    MQFilter40    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.565;DB;DP=224;DS;Dels=0.0;FS=24.367;HRun=2;HaplotypeScore=1.9092;MQ=38.31;MQ0=26;MQRankSum=-5.976;QD=8.57;ReadPosRankSum=1.456;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:129,95:224:99:1958,0,2905
2    92102211    rs3968138    A    G    504.09    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=4.645;DB;DP=155;DS;Dels=0.0;FS=16.103;HRun=1;HaplotypeScore=1.933;MQ=44.42;MQ0=8;MQRankSum=-9.261;QD=3.25;ReadPosRankSum=-0.599;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:99,55:155:99:534,0,3289
2    92102248    rs56299025    C    T    96.85    QDFilter2    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=1.211;DB;DP=106;DS;Dels=0.0;FS=6.813;HRun=1;HaplotypeScore=4.6988;MQ=49.86;MQ0=3;MQRankSum=-5.684;QD=0.91;ReadPosRankSum=-3.044;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:85,21:106:99:127,0,2612
2    92119432    rs75316624    T    C    77.78    MQFilter40    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=2.282;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.5189;MQ=27.17;MQ0=3;MQRankSum=-1.065;QD=2.68;ReadPosRankSum=0.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:23,6:29:99:108,0,480
2    92119472    rs7607493    T    G    91.16    MQFilter40;QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.06;MQ0=20;MQRankSum=0.09;QD=1.13;ReadPosRankSum=0.233;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:67,14:81:99:121,0,980
2    92119485    .    T    G    69.19    MQFilter40;QDFilter2    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=2.36;DP=92;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=19.65;MQ0=20;MQRankSum=-2.493;QD=0.75;ReadPosRankSum=-1.763;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:63,29:92:99:99,0,1214
2    92119518    rs148331796    A    G    730.48    MQFilter40    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=155;Dels=0.0;FS=18.101;HRun=0;HaplotypeScore=0.6651;MQ=20.95;MQ0=20;MQRankSum=0.547;QD=4.71;ReadPosRankSum=0.229;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:96,59:155:99:760,0,1696
2    92119526    rs146634276    TG    T    1556.71    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=8.768;DB;DP=131;FS=4.335;HRun=1;HaplotypeScore=561.1302;IndelType=D;MQ=20.02;MQ0=34;MQRankSum=0.943;QD=8.9;ReadPosRankSum=0.179;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:112,63:131:99:1596,0,3489
2    92119644    .    C    T    233.50    MQFilter40;QDFilter2    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.576;DP=215;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8317;MQ=9.88;MQ0=150;MQRankSum=1.684;QD=1.09;ReadPosRankSum=2.111;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:145,69:215:99:263,0,333
2    92119694    .    T    C    189.92    MQFilter40;QDFilter2    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.897;DP=234;DS;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=9.6847;MQ=8.37;MQ0=186;MQRankSum=-0.441;QD=0.81;ReadPosRankSum=-0.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:147,87:234:99:220,0,251
2    92119733    .    A    T    89.71    MQFilter40;QDFilter2    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.553;DP=216;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=6.86;MQ0=188;MQRankSum=-0.875;QD=0.42;ReadPosRankSum=1.474;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:143,73:216:99:120,0,220
2    92119751    .    G    C    80.06    MQFilter40;QDFilter2    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.812;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.71;MQ0=157;MQRankSum=-0.036;QD=0.45;ReadPosRankSum=-0.888;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC127391.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398120    GT:AD:DP:GQ:PL    0/1:114,63:178:87.42:110,0,87
2    95484342    .    T    A    56.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=46.58;MQ0=0;MQRankSum=0.322;QD=7.08;ReadPosRankSum=0.322;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432432    GT:AD:DP:GQ:PL    0/1:5,3:8:86.60:87,0,150
2    95524571    rs112371851    G    A    106.46    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.861;DB;DP=27;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.5784;MQ=44.93;MQ0=0;MQRankSum=-1.639;QD=3.94;ReadPosRankSum=-0.083;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432432    GT:AD:DP:GQ:PL    0/1:19,8:27:99:136,0,443
2    95524613    rs73957727    C    G    255.70    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=48;Dels=0.0;FS=3.366;HRun=1;HaplotypeScore=0.0;MQ=45.69;MQ0=0;MQRankSum=-1.868;QD=5.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432432    GT:AD:DP:GQ:PL    0/1:33,15:48:99:286,0,1053
2    95524619    rs113803378    C    T    264.69    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.602;DB;DP=52;Dels=0.0;FS=3.308;HRun=0;HaplotypeScore=0.734;MQ=45.93;MQ0=0;MQRankSum=-2.243;QD=5.09;ReadPosRankSum=0.486;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432432    GT:AD:DP:GQ:PL    0/1:37,15:52:99:295,0,1138
2    95524679    rs76199054    C    G    172.50    MQFilter40    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=0.123;DB;DP=62;Dels=0.0;FS=3.04;HRun=0;HaplotypeScore=0.8321;MQ=36.55;MQ0=13;MQRankSum=-1.128;QD=2.78;ReadPosRankSum=-0.343;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432432    GT:AD:DP:GQ:PL    0/1:51,11:62:99:202,0,1053
2    95524706    .    T    C    105.17    MQFilter40;QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.52;DP=71;Dels=0.0;FS=3.927;HRun=0;HaplotypeScore=0.0;MQ=30.86;MQ0=20;MQRankSum=-0.877;QD=1.48;ReadPosRankSum=-0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432432    GT:AD:DP:GQ:PL    0/1:62,9:71:99:135,0,1055
2    95524841    rs182478322    C    T    46.34    MQFilter40    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.13;MQ0=5;MQRankSum=1.422;QD=3.31;ReadPosRankSum=-1.001;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432432    GT:AD:DP:GQ:PL    0/1:11,3:14:76.33:76,0,103
2    95766599    rs115258802    C    T    119.98    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=21;Dels=0.0;FS=4.964;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.349;QD=5.71;ReadPosRankSum=2.182;SNPEFF_AMINO_ACID_CHANGE=R284Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_95766582_95766639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272418    GT:AD:DP:GQ:PL    0/1:16,5:21:99:150,0,502
2    95816017    rs34282100    T    TA    156.36    QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=85;FS=7.707;HRun=19;HaplotypeScore=627.287;IndelType=I;MQ=50.33;MQ0=0;MQRankSum=1.147;QD=1.84;ReadPosRankSum=-0.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF514;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447814    GT:AD:DP:GQ:PL    0/1:57,23:85:53.61:195,0,54
2    95830652    rs6719142    T    C    523.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF514;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447814    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:557,42,0
2    95830737    rs11459000    C    CA    3055.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.0;HRun=5;HaplotypeScore=185.5081;IndelType=I;MQ=61.34;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF514;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447814    GT:AD:DP:GQ:PL    1/1:2,80:82:99:3097,238,0
2    95843080    rs35376938    TC    T    366.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=29.979;IndelType=D;MQ=60.98;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295210    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:409,33,0
2    95846158    rs3112230    T    C    174.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295210    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:207,18,0
2    95847040    rs10578519    TGCG    T    2982.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.0;HRun=0;HaplotypeScore=360.1108;IndelType=D;MQ=59.62;MQ0=0;QD=36.37;SNPEFF_AMINO_ACID_CHANGE=LR114L;SNPEFF_CODON_CHANGE=ttgcgg/ttg;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_2_95846848_95850065;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398107    GT:AD:DP:GQ:PL    1/1:14,68:82:99:3025,196,0
2    95848018    rs3105105    T    C    85.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453539    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
2    95945568    rs7585914    G    A    660.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=26.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463580    GT:AD:DP:GQ:PL    1/1:0,24:25:51.16:694,51,0
2    95945830    rs7586229    G    T    206.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463580    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
2    95947085    rs12992066    A    G    1059.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.628;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-1.523;QD=32.1;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=Q508R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_95946990_95947113;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317620    GT:AD:DP:GQ:PL    1/1:1,32:33:44.64:1092,45,0
2    95952177    rs7602232    C    G    336.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317620    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:369,30,0
2    95952641    rs1006021    A    G    305.15    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.373;DB;DP=28;Dels=0.0;FS=9.204;HRun=4;HaplotypeScore=1.8662;MQ=57.48;MQ0=0;MQRankSum=0.267;QD=10.9;ReadPosRankSum=0.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497110    GT:AD:DP:GQ:PL    0/1:15,13:28:99:335,0,420
2    96012907    rs7602807    C    G    129.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295225    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
2    96076409    rs6577014    C    T    90.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.38;MQ0=1;QD=11.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAHD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418606    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:123,9,0
2    96184423    rs1862896    C    A    902.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=37.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC009237.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427305    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:935,72,0
2    96185714    rs35256168    C    T    1519.82    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.7;DB;DP=76;Dels=0.0;FS=0.943;HRun=0;HaplotypeScore=0.8321;MQ=59.45;MQ0=0;MQRankSum=0.339;QD=20.0;ReadPosRankSum=1.125;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC009237.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427305    GT:AD:DP:GQ:PL    0/1:28,48:76:99:1550,0,790
2    96212699    rs36087694    G    A    3161.91    PASS    AB=0.502;AC=1;AF=0.50;AN=2;BaseQRankSum=3.64;DB;DP=201;Dels=0.0;FS=4.051;HRun=1;HaplotypeScore=0.734;MQ=57.39;MQ0=0;MQRankSum=1.113;QD=15.73;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=tRNA_pseudogene;SNPEFF_GENE_NAME=AC009237.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489179    GT:AD:DP:GQ:PL    0/1:101,100:201:99:3192,0,2826
2    96260979    rs7565318    T    C    710.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.8;MQ0=1;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272395    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:743,54,0
2    96265165    .    C    T    55.81    MQFilter40;QDFilter2    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DP=195;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.32;MQ0=187;MQRankSum=0.322;QD=0.29;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=Y395;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96264840_96265526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272395    GT:AD:DP:GQ:PL    0/1:108,87:195:76.49:86,0,76
2    96265407    .    C    CT    116.64    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DP=11;FS=0.0;HRun=6;HaplotypeScore=21.7391;IndelType=I;MQ=21.0;MQ0=13;MQRankSum=0.143;QD=4.86;ReadPosRankSum=-0.825;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272395    GT:AD:DP:GQ:PL    0/1:13,11:11:99:156,0,151
2    96504594    rs11676926    C    T    1137.29    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=81;Dels=0.0;FS=5.881;HRun=3;HaplotypeScore=0.5784;MQ=56.28;MQ0=0;MQRankSum=0.874;QD=14.04;ReadPosRankSum=-0.591;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1167,0,1301
2    96519753    .    C    T    248.27    MQFilter40    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.85;MQ0=1;QD=24.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531153    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:281,24,0
2    96521138    rs5005871    T    C    783.38    FSFilter60;MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.613;DB;DP=250;DS;Dels=0.0;FS=97.33;HRun=0;HaplotypeScore=5.5514;MQ=39.07;MQ0=10;MQRankSum=-11.816;QD=3.13;ReadPosRankSum=-3.626;SNPEFF_AMINO_ACID_CHANGE=N1624S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96521014_96521928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:147,103:250:99:813,0,4529
2    96521220    rs5005870    G    A    1083.20    MQFilter40    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.796;DB;DP=203;DS;Dels=0.0;FS=0.644;HRun=1;HaplotypeScore=2.7377;MQ=27.93;MQ0=16;MQRankSum=-6.079;QD=5.34;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=L1597;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96521014_96521928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:108,95:203:99:1113,0,2432
2    96521297    rs5005869    T    C    1097.57    MQFilter40    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.598;DB;DP=234;DS;Dels=0.0;FS=57.558;HRun=0;HaplotypeScore=1.6988;MQ=32.24;MQ0=7;MQRankSum=-6.452;QD=4.69;ReadPosRankSum=-2.202;SNPEFF_AMINO_ACID_CHANGE=N1571S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96521014_96521928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:146,88:234:99:1128,0,3691
2    96521324    rs5005868    A    G    138.18    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.666;DB;DP=194;DS;Dels=0.0;FS=35.052;HRun=0;HaplotypeScore=13.9637;MQ=30.4;MQ0=12;MQRankSum=-4.788;QD=0.71;ReadPosRankSum=-6.451;SNPEFF_AMINO_ACID_CHANGE=I1562T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96521014_96521928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:148,46:194:99:168,0,3440
2    96523006    rs12717776    A    C    1471.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=36.69;MQ0=10;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    1/1:8,50:58:99:1504,114,0
2    96523009    rs12717777    A    C    1411.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=35.4;MQ0=12;QD=22.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    1/1:8,55:63:99:1444,114,0
2    96523047    rs12717778    A    G    1526.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=28.38;MQ0=27;QD=14.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    1/1:18,89:107:99:1560,135,0
2    96523096    rs10211258    T    C    2858.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4468;MQ=26.74;MQ0=36;QD=17.32;SNPEFF_AMINO_ACID_CHANGE=A1347;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96523057_96523240;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    1/1:25,140:165:99:2891,273,0
2    96525453    rs73958141    T    A    49.40    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.45;MQ0=0;MQRankSum=-0.55;QD=7.06;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:3,4:7:66.06:79,0,66
2    96525483    rs112872957    C    T    213.39    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.11;MQ0=0;MQRankSum=0.551;QD=14.23;ReadPosRankSum=-0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:5,10:15:70.14:243,0,70
2    96525507    rs140490087    C    T    363.14    MQFilter40    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.22;MQ0=0;MQRankSum=1.143;QD=15.13;ReadPosRankSum=-0.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:7,17:24:85.52:393,0,86
2    96525532    rs145519218    G    A    356.49    MQFilter40    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=5.661;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.12;MQ0=0;MQRankSum=0.169;QD=7.75;ReadPosRankSum=2.104;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:18,28:46:99:386,0,346
2    96525533    rs150757101    C    T    356.48    MQFilter40    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.564;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.12;MQ0=0;MQRankSum=0.349;QD=7.75;ReadPosRankSum=2.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:18,28:46:99:386,0,361
2    96525545    rs112575422    T    C    600.04    MQFilter40    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.42;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.9;MQ0=0;MQRankSum=-0.725;QD=10.17;ReadPosRankSum=1.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:26,33:59:99:630,0,579
2    96525556    rs112217943    C    T    612.85    MQFilter40    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.608;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.54;MQ0=0;MQRankSum=-2.203;QD=7.38;ReadPosRankSum=0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:37,46:83:99:643,0,945
2    96525576    rs150177125    C    T    815.05    MQFilter40    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DB;DP=135;Dels=0.0;FS=1.373;HRun=0;HaplotypeScore=2.713;MQ=33.71;MQ0=0;MQRankSum=-6.232;QD=6.04;ReadPosRankSum=-3.075;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:56,79:135:99:845,0,1553
2    96525610    .    T    C    44.19    MQFilter40;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DP=217;Dels=0.0;FS=6.842;HRun=2;HaplotypeScore=3.1592;MQ=37.23;MQ0=0;MQRankSum=-2.023;QD=0.2;ReadPosRankSum=-0.202;SNPEFF_AMINO_ACID_CHANGE=R1299G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96525609_96525822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:191,26:217:74.18:74,0,4259
2    96525640    rs77864759    G    T    1104.62    HaplotypeScoreFilter13    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=233;Dels=0.0;FS=6.283;HRun=1;HaplotypeScore=46.8007;MQ=40.5;MQ0=0;MQRankSum=-6.457;QD=4.74;ReadPosRankSum=1.331;SNPEFF_AMINO_ACID_CHANGE=L1289I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96525609_96525822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:141,92:233:99:1135,0,3667
2    96525643    rs75198192    T    C    311.44    HaplotypeScoreFilter13;QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=3.195;DB;DP=233;Dels=0.0;FS=5.768;HRun=0;HaplotypeScore=88.2636;MQ=41.06;MQ0=0;MQRankSum=-4.553;QD=1.34;ReadPosRankSum=1.351;SNPEFF_AMINO_ACID_CHANGE=T1288A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96525609_96525822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:189,44:233:99:341,0,4459
2    96525652    rs77710257    T    C    1815.88    HaplotypeScoreFilter13    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=2.974;DB;DP=233;Dels=0.0;FS=4.573;HRun=0;HaplotypeScore=82.5221;MQ=40.9;MQ0=0;MQRankSum=-9.657;QD=7.79;ReadPosRankSum=2.518;SNPEFF_AMINO_ACID_CHANGE=K1285E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96525609_96525822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:103,130:233:99:1846,0,3114
2    96525659    rs72931750    C    T    1037.19    HaplotypeScoreFilter13    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=1.616;DB;DP=219;Dels=0.0;FS=1.389;HRun=0;HaplotypeScore=40.2619;MQ=41.1;MQ0=0;MQRankSum=-5.663;QD=4.74;ReadPosRankSum=2.823;SNPEFF_AMINO_ACID_CHANGE=S1282;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96525609_96525822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:144,75:219:99:1067,0,3633
2    96525717    rs111957693    A    AT    444.28    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=7.88;DB;DP=140;FS=48.637;HRun=0;HaplotypeScore=915.8749;IndelType=I;MQ=44.37;MQ0=0;MQRankSum=-6.867;QD=2.34;ReadPosRankSum=-0.498;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_96525609_96525822;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000419039    GT:AD:DP:GQ:PL    0/1:125,64:140:99:483,0,4058
2    96546352    rs189877528    G    A    668.79    MQFilter40    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=121;Dels=0.0;FS=3.744;HRun=0;HaplotypeScore=0.9665;MQ=28.35;MQ0=35;MQRankSum=0.487;QD=5.53;ReadPosRankSum=0.183;SNPEFF_AMINO_ACID_CHANGE=P1129;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96546343_96546371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:82,39:121:99:699,0,1252
2    96548068    rs11695514    C    T    1052.01    MQFilter40    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=2.449;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=36.82;MQ0=5;MQRankSum=1.756;QD=7.91;ReadPosRankSum=-1.012;SNPEFF_AMINO_ACID_CHANGE=G1117S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96548050_96548122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:83,50:133:99:1082,0,1984
2    96551974    .    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.5;MQ0=6;QD=4.45;SNPEFF_AMINO_ACID_CHANGE=L1027P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96551964_96551992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    1/1:0,8:8:6.02:67,6,0
2    96553772    rs4907218    G    C    1151.79    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.355;DB;DP=133;Dels=0.0;FS=2.391;HRun=0;HaplotypeScore=0.734;MQ=46.47;MQ0=4;MQRankSum=-9.187;QD=8.66;ReadPosRankSum=1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:81,52:133:99:1182,0,2624
2    96555522    rs12471925    C    A    612.09    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=70;Dels=0.0;FS=3.843;HRun=0;HaplotypeScore=0.8667;MQ=49.66;MQ0=1;MQRankSum=-6.872;QD=8.74;ReadPosRankSum=0.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:44,26:70:99:642,0,1525
2    96563206    rs4907220    A    T    141.47    MQFilter40;QDFilter2    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.572;DB;DP=117;Dels=0.0;FS=23.678;HRun=0;HaplotypeScore=0.0;MQ=25.27;MQ0=35;MQRankSum=-2.831;QD=1.21;ReadPosRankSum=-1.298;SNPEFF_AMINO_ACID_CHANGE=S240;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96563185_96563213;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:73,44:117:99:171,0,1597
2    96569017    rs62153692    C    T    138.82    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.18;MQ0=0;MQRankSum=-0.38;QD=11.57;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:7,5:12:99:169,0,189
2    96574551    .    C    T    214.06    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=4.431;DP=50;Dels=0.0;FS=8.759;HRun=0;HaplotypeScore=0.5784;MQ=25.42;MQ0=15;MQRankSum=-0.087;QD=4.28;ReadPosRankSum=-1.685;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:32,18:50:99:244,0,559
2    96578247    rs58719199    G    A    1120.13    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=95;Dels=0.0;FS=1.095;HRun=0;HaplotypeScore=2.927;MQ=48.11;MQ0=1;MQRankSum=-7.002;QD=11.79;ReadPosRankSum=-1.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:47,48:95:99:1150,0,1479
2    96580165    rs62153699    T    C    435.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.705;QD=14.52;ReadPosRankSum=-0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:15,15:30:99:466,0,534
2    96583735    rs4605406    A    C    769.52    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.731;DB;DP=152;Dels=0.0;FS=58.306;HRun=0;HaplotypeScore=4.2833;MQ=48.21;MQ0=8;MQRankSum=-6.1;QD=5.06;ReadPosRankSum=-1.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:105,46:152:99:800,0,3292
2    96583823    rs4613327    G    A    150.34    QDFilter2    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.601;DB;DP=102;Dels=0.0;FS=1.241;HRun=0;HaplotypeScore=1.9132;MQ=52.42;MQ0=8;MQRankSum=-6.569;QD=1.47;ReadPosRankSum=0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:76,26:102:99:180,0,2570
2    96585613    rs12471927    C    A    1391.81    MQFilter40    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.204;DB;DP=141;Dels=0.0;FS=23.296;HRun=1;HaplotypeScore=0.0;MQ=32.19;MQ0=4;MQRankSum=1.016;QD=9.87;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:80,61:141:99:1422,0,1702
2    96585703    .    A    G    399.67    MQFilter40    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DP=138;Dels=0.0;FS=4.773;HRun=0;HaplotypeScore=0.0;MQ=37.74;MQ0=6;MQRankSum=-8.111;QD=2.9;ReadPosRankSum=-1.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:73,65:138:99:430,0,2091
2    96587496    rs56791141    C    T    2053.93    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.319;DB;DP=145;Dels=0.0;FS=1.339;HRun=2;HaplotypeScore=1.612;MQ=58.82;MQ0=0;MQRankSum=0.726;QD=14.17;ReadPosRankSum=1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295246    GT:AD:DP:GQ:PL    0/1:72,73:145:99:2084,0,2142
2    96593217    rs138857764    AT    A    59.06    QDFilter2    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=5.67;DB;DP=127;FS=10.364;HRun=2;HaplotypeScore=536.2169;IndelType=D;MQ=54.06;MQ0=3;MQRankSum=-5.644;QD=0.44;ReadPosRankSum=-2.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:116,19:127:98.09:98,0,4566
2    96593340    rs77793306    C    G    56.50    MQFilter40;QDFilter2    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.51;MQ0=6;MQRankSum=-4.843;QD=1.45;ReadPosRankSum=1.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:17,22:39:86.50:86,0,591
2    96593436    rs62153706    C    T    279.47    MQFilter40    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=28.76;MQ0=0;MQRankSum=1.159;QD=23.29;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:1,11:12:0.34:308,0,0
2    96594648    rs75444333    A    G    74.86    MQFilter40    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=28.02;MQ0=1;MQRankSum=-2.899;QD=4.99;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:4,11:15:99:105,0,136
2    96594697    rs72931795    G    C    189.05    MQFilter40    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.479;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.09;MQ0=0;MQRankSum=-4.968;QD=5.11;ReadPosRankSum=3.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:18,19:37:99:219,0,629
2    96594723    rs78476446    A    G    85.33    QDFilter2    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.914;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=42.99;MQ0=0;MQRankSum=-5.341;QD=1.74;ReadPosRankSum=0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:33,16:49:99:115,0,1164
2    96594735    rs75927751    C    T    58.89    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=46.45;MQ0=0;MQRankSum=-4.921;QD=1.09;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:42,12:54:88.88:89,0,1538
2    96594742    rs75729585    C    T    33.54    QDFilter2    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.67;MQ0=0;MQRankSum=-4.942;QD=0.61;ReadPosRankSum=-2.843;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:43,12:55:63.53:64,0,1579
2    96594906    .    G    GA    40.83    QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=5.199;DP=119;FS=21.604;HRun=3;HaplotypeScore=536.5632;IndelType=I;MQ=23.4;MQ0=64;MQRankSum=-1.587;QD=0.18;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:188,44:119:79.86:80,0,3330
2    96594915    .    TAATC    T    190.60    QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=4.909;DP=101;FS=24.412;HRun=0;HaplotypeScore=626.3991;IndelType=D;MQ=21.15;MQ0=68;MQRankSum=-0.938;QD=0.84;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:180,47:101:99:230,0,6389
2    96594966    .    T    G    65.63    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=3.43;DP=250;DS;Dels=0.0;FS=33.193;HRun=0;HaplotypeScore=14.562;MQ=12.08;MQ0=153;MQRankSum=-3.136;QD=0.26;ReadPosRankSum=-1.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:141,109:250:95.62:96,0,823
2    96595032    .    A    T    1037.76    HaplotypeScoreFilter13;MQFilter40    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=2.372;DP=247;DS;Dels=0.0;FS=0.989;HRun=1;HaplotypeScore=24.1696;MQ=13.99;MQ0=142;MQRankSum=-2.624;QD=4.2;ReadPosRankSum=1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:86,160:247:99:1068,0,391
2    96595037    .    TAATC    T    90.62    QDFilter2    AB=0.976;AC=1;AF=0.50;AN=2;BaseQRankSum=2.866;DP=67;DS;FS=0.0;HRun=0;HaplotypeScore=479.7277;IndelType=D;MQ=13.95;MQ0=142;MQRankSum=3.744;QD=0.37;ReadPosRankSum=0.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:240,6:67:99:130,0,4587
2    96595110    .    G    A    437.07    MQFilter40    AB=0.322;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.166;DP=184;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=9.64;MQ0=145;MQRankSum=1.08;QD=2.38;ReadPosRankSum=0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:59,124:184:12.99:467,0,13
2    96595198    .    G    T    65.35    MQFilter40;QDFilter2    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.353;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.95;MQ0=23;MQRankSum=-2.507;QD=1.52;ReadPosRankSum=-0.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:23,20:43:95.34:95,0,183
2    96595221    rs62153725    C    T    39.63    MQFilter40;QDFilter2    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=16.44;MQ0=14;MQRankSum=-1.408;QD=1.59;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:12,13:25:69.62:70,0,126
2    96601109    rs115037112    C    T    151.87    MQFilter40    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.32;MQ0=1;MQRankSum=0.961;QD=4.9;ReadPosRankSum=2.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:22,9:31:99:182,0,603
2    96601123    .    G    A    56.79    MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=30.77;MQ0=5;MQRankSum=-2.111;QD=1.58;ReadPosRankSum=0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:25,11:36:86.78:87,0,658
2    96601137    .    G    A    81.21    MQFilter40;QDFilter2    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.646;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8267;MQ=27.93;MQ0=7;MQRankSum=-1.21;QD=1.8;ReadPosRankSum=1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:32,13:45:99:111,0,693
2    96601153    .    G    A    102.64    MQFilter40;QDFilter2    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.196;DP=68;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=7.7552;MQ=22.59;MQ0=22;MQRankSum=-0.951;QD=1.49;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:40,28:68:99:133,0,763
2    96601240    .    G    A    331.65    MQFilter40;QDFilter2    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.804;DP=194;Dels=0.0;FS=5.309;HRun=0;HaplotypeScore=10.6267;MQ=21.81;MQ0=93;MQRankSum=0.242;QD=1.71;ReadPosRankSum=2.476;SNPEFF_AMINO_ACID_CHANGE=A566V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96601202_96601274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:99,95:194:99:362,0,1567
2    96601296    .    A    ATGATTAAT    931.48    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=7.32;DP=116;FS=0.876;HRun=0;HaplotypeScore=918.5205;IndelType=I;MQ=31.86;MQ0=19;MQRankSum=2.291;QD=6.42;ReadPosRankSum=-5.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:119,16:116:99:971,0,6381
2    96601312    .    G    A    351.66    MQFilter40    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.427;DP=137;Dels=0.0;FS=15.159;HRun=0;HaplotypeScore=0.0;MQ=30.51;MQ0=9;MQRankSum=-1.338;QD=2.57;ReadPosRankSum=-5.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:107,30:137:99:382,0,2537
2    96601345    rs149389865    T    C    656.53    MQFilter40    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.712;DB;DP=177;Dels=0.0;FS=2.855;HRun=0;HaplotypeScore=1.9157;MQ=24.91;MQ0=46;MQRankSum=-0.444;QD=3.69;ReadPosRankSum=4.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:101,66:177:99:687,0,1867
2    96601364    rs148485539    C    T    728.60    MQFilter40    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=1.502;DB;DP=186;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=21.49;MQ0=66;MQRankSum=1.079;QD=3.92;ReadPosRankSum=3.274;SNPEFF_AMINO_ACID_CHANGE=T554;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96601364_96601392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:92,94:186:99:759,0,1314
2    96604390    rs151015608    C    T    134.67    MQFilter40    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.66;MQ0=2;MQRankSum=-1.741;QD=11.22;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:1,11:12:17.75:165,0,18
2    96604391    rs145784647    A    G    134.67    MQFilter40    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.09;MQ0=4;MQRankSum=-1.741;QD=9.62;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:1,13:14:17.22:165,0,17
2    96604420    rs74931694    A    T    379.69    MQFilter40    AB=0.161;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.783;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9982;MQ=36.02;MQ0=8;MQRankSum=-1.975;QD=12.25;ReadPosRankSum=1.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:5,26:31:99:410,0,133
2    96604452    .    C    A    37.47    MQFilter40;QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=2.708;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=36.12;MQ0=13;MQRankSum=-1.193;QD=0.71;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:46,7:53:67.46:67,0,1066
2    96604516    rs62154560    C    T    3743.24    PASS    AB=0.205;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=189;Dels=0.0;FS=4.697;HRun=0;HaplotypeScore=12.9765;MQ=43.51;MQ0=8;MQRankSum=-5.24;QD=19.81;ReadPosRankSum=0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:36,140:189:99:3743,0,985
2    96604576    .    C    T    75.31    QDFilter2    AB=0.912;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.375;DP=250;DS;Dels=0.0;FS=5.814;HRun=0;HaplotypeScore=1.8332;MQ=41.88;MQ0=13;MQRankSum=-3.219;QD=0.3;ReadPosRankSum=0.015;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:227,22:250:99:105,0,6560
2    96604591    rs62154561    A    G    4996.90    PASS    AB=0.181;AC=1;AF=0.50;AN=2;BaseQRankSum=0.668;DB;DP=250;DS;Dels=0.0;FS=2.335;HRun=1;HaplotypeScore=1.865;MQ=40.43;MQ0=19;MQRankSum=-6.006;QD=19.99;ReadPosRankSum=-0.017;SNPEFF_AMINO_ACID_CHANGE=L540P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96604577_96604649;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:45,204:250:99:4997,0,992
2    96604632    rs62154562    A    T    3185.91    FSFilter60;MQFilter40    AB=0.243;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DB;DP=211;DS;Dels=0.0;FS=67.376;HRun=0;HaplotypeScore=0.9578;MQ=34.81;MQ0=31;MQRankSum=-4.929;QD=15.1;ReadPosRankSum=1.433;SNPEFF_AMINO_ACID_CHANGE=S526R;SNPEFF_CODON_CHANGE=agT/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96604577_96604649;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:51,159:211:99:3216,0,1262
2    96604679    rs62154563    C    T    2221.35    FSFilter60;HaplotypeScoreFilter13;MQFilter40    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.14;DB;DP=247;DS;Dels=0.0;FS=101.734;HRun=0;HaplotypeScore=29.7594;MQ=27.92;MQ0=71;MQRankSum=-2.932;QD=8.99;ReadPosRankSum=-1.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:75,143:247:99:2251,0,1522
2    96604730    rs113311459    T    C    1179.08    MQFilter40    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.828;DB;DP=229;DS;Dels=0.0;FS=10.363;HRun=0;HaplotypeScore=2.4383;MQ=20.73;MQ0=113;MQRankSum=-1.751;QD=5.15;ReadPosRankSum=1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:92,136:229:99:1209,0,1245
2    96604767    .    C    A    256.76    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DP=194;DS;Dels=0.0;FS=1.787;HRun=3;HaplotypeScore=18.5975;MQ=15.94;MQ0=119;MQRankSum=-0.285;QD=1.32;ReadPosRankSum=-0.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:145,49:194:99:287,0,1133
2    96604771    .    G    A    514.62    HaplotypeScoreFilter13;MQFilter40    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.409;DP=187;DS;Dels=0.0;FS=6.896;HRun=3;HaplotypeScore=17.631;MQ=16.1;MQ0=113;MQRankSum=-0.862;QD=2.75;ReadPosRankSum=-0.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:89,98:187:99:545,0,848
2    96604785    .    T    A    430.96    MQFilter40    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.064;DP=179;Dels=0.0;FS=12.739;HRun=2;HaplotypeScore=0.0;MQ=15.28;MQ0=115;MQRankSum=0.061;QD=2.41;ReadPosRankSum=-1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:85,94:179:99:461,0,736
2    96604799    .    T    G    279.92    MQFilter40;QDFilter2    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=4.247;DP=149;Dels=0.0;FS=2.98;HRun=2;HaplotypeScore=0.5784;MQ=14.44;MQ0=101;MQRankSum=0.711;QD=1.88;ReadPosRankSum=-1.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:86,63:149:99:310,0,598
2    96604810    .    C    T    95.11    MQFilter40;QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.575;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=14.54;MQ0=88;MQRankSum=0.809;QD=0.72;ReadPosRankSum=0.894;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:103,29:133:99:125,0,693
2    96606829    rs190428367    C    T    98.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.643;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=41.92;MQ0=0;MQRankSum=-3.817;QD=4.5;ReadPosRankSum=0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:11,11:22:99:129,0,363
2    96606833    .    TGTTTC    T    327.53    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.377;DP=20;FS=0.0;HRun=0;HaplotypeScore=216.6348;IndelType=D;MQ=44.41;MQ0=0;MQRankSum=-3.464;QD=14.24;ReadPosRankSum=2.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:14,9:20:99:367,0,1176
2    96606839    .    T    TA    177.98    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=3.464;DP=22;FS=0.0;HRun=0;HaplotypeScore=189.4761;IndelType=I;MQ=44.23;MQ0=0;MQRankSum=-3.153;QD=7.12;ReadPosRankSum=2.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:16,9:22:99:217,0,551
2    96606944    rs78739183    C    T    620.23    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.736;DB;DP=60;Dels=0.0;FS=6.477;HRun=2;HaplotypeScore=3.8755;MQ=41.6;MQ0=5;MQRankSum=-4.409;QD=10.34;ReadPosRankSum=-1.045;SNPEFF_AMINO_ACID_CHANGE=G499R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96606908_96606947;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:22,38:60:99:650,0,389
2    96606985    rs79451673    T    C    366.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.235;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.18;MQ0=3;MQRankSum=-3.328;QD=9.16;ReadPosRankSum=0.911;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:16,24:40:99:396,0,458
2    96606998    .    C    T    390.30    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DP=34;Dels=0.0;FS=3.078;HRun=1;HaplotypeScore=0.8667;MQ=41.81;MQ0=3;MQRankSum=-2.982;QD=11.48;ReadPosRankSum=1.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:13,21:34:99:420,0,372
2    96607003    .    G    A    401.60    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=40.3;MQ0=3;MQRankSum=-3.266;QD=13.39;ReadPosRankSum=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:9,21:30:99:432,0,289
2    96607028    rs142163060    T    C    320.42    MQFilter40    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.509;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=39.38;MQ0=2;MQRankSum=-1.805;QD=15.26;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:5,16:21:99:350,0,119
2    96607048    rs72933842    G    A    211.82    MQFilter40    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7446;MQ=27.36;MQ0=2;MQRankSum=-2.003;QD=16.29;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:2,11:13:28.78:242,0,29
2    96610329    .    G    C    532.29    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.021;DP=77;Dels=0.0;FS=1.798;HRun=0;HaplotypeScore=0.9997;MQ=45.78;MQ0=3;MQRankSum=-5.996;QD=6.91;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:47,30:77:99:562,0,1496
2    96610395    .    C    CA    1704.61    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=9.928;DP=144;FS=32.825;HRun=3;HaplotypeScore=1116.5539;IndelType=I;MQ=47.95;MQ0=3;MQRankSum=-9.849;QD=11.29;ReadPosRankSum=2.616;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_96610375_96610442;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:89,62:144:99:1744,0,2502
2    96610420    rs78473403    G    T    973.45    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=150;Dels=0.0;FS=15.468;HRun=4;HaplotypeScore=2.4678;MQ=49.24;MQ0=3;MQRankSum=-9.847;QD=6.49;ReadPosRankSum=-2.215;SNPEFF_AMINO_ACID_CHANGE=D482E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96610375_96610442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:92,57:150:99:1003,0,2807
2    96610479    .    A    G    209.91    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DP=94;Dels=0.0;FS=12.534;HRun=0;HaplotypeScore=0.0;MQ=50.12;MQ0=2;MQRankSum=-7.195;QD=2.21;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:64,30:94:99:240,0,2125
2    96610495    rs144198449    G    A    331.28    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=1.345;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6961;MQ=49.36;MQ0=2;MQRankSum=-6.118;QD=4.73;ReadPosRankSum=0.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:47,22:69:99:361,0,1703
2    96610525    rs79583286    G    A    398.08    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.128;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9962;MQ=49.43;MQ0=2;MQRankSum=-5.967;QD=7.37;ReadPosRankSum=1.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:33,21:54:99:428,0,1178
2    96610540    .    G    C    372.84    SnpCluster    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9916;MQ=48.85;MQ0=0;MQRankSum=-5.551;QD=8.67;ReadPosRankSum=0.726;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:25,18:43:99:403,0,884
2    96610544    .    G    T    295.29    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.759;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.9916;MQ=49.44;MQ0=0;MQRankSum=-5.315;QD=7.38;ReadPosRankSum=1.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:24,16:40:99:325,0,870
2    96610546    .    G    T    211.71    SnpCluster    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.442;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9933;MQ=49.14;MQ0=0;MQRankSum=-4.813;QD=5.43;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:23,12:39:99:242,0,825
2    96610552    rs11897663    G    C    340.86    SnpCluster    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.862;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.8271;MQ=46.26;MQ0=0;MQRankSum=-4.393;QD=10.03;ReadPosRankSum=-0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:19,15:34:99:371,0,618
2    96610567    .    T    TAC    384.18    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=3.995;DP=24;FS=2.917;HRun=0;HaplotypeScore=306.6483;IndelType=I;MQ=45.25;MQ0=1;MQRankSum=-2.445;QD=15.37;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:17,8:24:99:423,0,577
2    96610611    .    C    T    70.65    MQFilter40    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DP=15;Dels=0.0;FS=2.616;HRun=1;HaplotypeScore=1.7552;MQ=39.38;MQ0=3;MQRankSum=-0.6;QD=4.71;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:8,7:15:99:101,0,224
2    96610678    .    G    A    264.21    MQFilter40    AB=0.063;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DP=16;Dels=0.0;FS=10.414;HRun=0;HaplotypeScore=0.9983;MQ=26.49;MQ0=5;MQRankSum=-1.739;QD=16.51;ReadPosRankSum=0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:1,15:16:5.49:294,0,5
2    96610731    .    C    G    233.89    MQFilter40    AB=0.242;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.149;DP=33;Dels=0.0;FS=7.858;HRun=0;HaplotypeScore=2.7339;MQ=34.48;MQ0=3;MQRankSum=-4.15;QD=7.09;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:8,25:33:99:264,0,275
2    96610759    .    T    A    707.31    MQFilter40    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DP=57;Dels=0.0;FS=8.926;HRun=0;HaplotypeScore=0.0;MQ=36.57;MQ0=2;MQRankSum=-5.658;QD=12.41;ReadPosRankSum=-0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:15,42:57:99:737,0,493
2    96610768    .    T    G    930.81    MQFilter40    AB=0.26;AC=1;AF=0.50;AN=2;BaseQRankSum=0.24;DP=73;Dels=0.0;FS=4.694;HRun=0;HaplotypeScore=1.7465;MQ=37.06;MQ0=2;MQRankSum=-6.423;QD=12.75;ReadPosRankSum=-1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:19,54:73:99:961,0,597
2    96610787    rs112708872    C    CA    2632.48    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=7.951;DB;DP=115;FS=0.0;HRun=6;HaplotypeScore=1468.2261;IndelType=I;MQ=36.13;MQ0=6;MQRankSum=-7.951;QD=19.79;ReadPosRankSum=-1.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:56,77:115:99:2672,0,560
2    96610805    .    AAGAAAG    A    6144.51    PASS    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=7.188;DP=170;FS=0.0;HRun=0;HaplotypeScore=2140.5664;IndelType=D;MQ=39.42;MQ0=7;MQRankSum=-6.954;QD=33.21;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:132,53:170:99:6145,0,3939
2    96610806    .    AGAAAG    A    5330.79    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=7.67;DP=172;FS=0.0;HRun=0;HaplotypeScore=2158.5051;IndelType=D;MQ=39.98;MQ0=7;MQRankSum=-7.777;QD=28.97;ReadPosRankSum=-0.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:151,29:172:99:5331,0,3524
2    96610810    .    AG    A    2047.09    PASS    AB=0.906;AC=1;AF=0.50;AN=2;BaseQRankSum=10.408;DP=189;FS=0.0;HRun=1;HaplotypeScore=2294.1036;IndelType=D;MQ=40.77;MQ0=7;MQRankSum=-7.41;QD=10.13;ReadPosRankSum=-1.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:181,21:189:99:2086,0,1423
2    96610836    rs11893977    T    C    3437.65    PASS    AB=0.239;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.295;DB;DP=249;DS;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=11.7421;MQ=43.73;MQ0=9;MQRankSum=-6.233;QD=13.75;ReadPosRankSum=-2.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:58,185:249:99:3438,0,1652
2    96610899    rs62154593    T    C    4660.09    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.53;DB;DP=248;DS;Dels=0.0;FS=7.723;HRun=0;HaplotypeScore=2.9925;MQ=49.35;MQ0=5;MQRankSum=-3.477;QD=18.79;ReadPosRankSum=-1.176;SNPEFF_AMINO_ACID_CHANGE=T462;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96610862_96610922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:59,189:248:99:4660,0,1539
2    96610921    rs62154594    T    G    5454.06    HaplotypeScoreFilter13    AB=0.213;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.312;DB;DP=244;DS;Dels=0.0;FS=5.551;HRun=0;HaplotypeScore=15.5606;MQ=48.71;MQ0=6;MQRankSum=-3.874;QD=22.35;ReadPosRankSum=-0.918;SNPEFF_AMINO_ACID_CHANGE=N455T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96610862_96610922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:52,192:244:99:5454,0,1370
2    96610952    rs62154595    T    C    5771.95    HaplotypeScoreFilter13    AB=0.195;AC=1;AF=0.50;AN=2;BaseQRankSum=4.153;DB;DP=236;DS;Dels=0.0;FS=3.704;HRun=0;HaplotypeScore=49.0594;MQ=47.59;MQ0=6;MQRankSum=-3.982;QD=24.46;ReadPosRankSum=1.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:46,190:236:99:5772,0,1146
2    96610958    rs79852024    G    T    2231.68    HaplotypeScoreFilter13    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.874;DB;DP=228;DS;Dels=0.0;FS=4.791;HRun=1;HaplotypeScore=45.1037;MQ=47.36;MQ0=8;MQRankSum=-0.921;QD=9.79;ReadPosRankSum=1.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:140,88:228:99:2262,0,4342
2    96611018    rs62154596    G    A    2415.45    MQFilter40    AB=0.183;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=120;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=37.76;MQ0=5;MQRankSum=-2.108;QD=20.13;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:22,98:120:99:2445,0,543
2    96611078    rs62154597    T    G    804.67    HaplotypeScoreFilter13;MQFilter40    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=2.479;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.4965;MQ=29.09;MQ0=1;MQRankSum=-1.453;QD=17.88;ReadPosRankSum=0.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:6,39:45:99:835,0,109
2    96611088    rs62154598    G    A    665.91    MQFilter40    AB=0.184;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.756;DB;DP=38;Dels=0.0;FS=7.634;HRun=0;HaplotypeScore=9.3717;MQ=30.88;MQ0=1;MQRankSum=-0.252;QD=17.52;ReadPosRankSum=-1.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:7,31:38:99:696,0,117
2    96611146    rs149738552    A    G    241.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=14;Dels=0.0;FS=4.15;HRun=1;HaplotypeScore=0.9998;MQ=47.12;MQ0=0;MQRankSum=1.468;QD=17.28;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:6,8:14:99:272,0,131
2    96614092    rs4243789    C    A    62.61    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.28;MQ0=1;MQRankSum=0.727;QD=12.52;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    1/1:2,3:5:9.02:95,9,0
2    96614212    rs4907288    A    G    667.79    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.575;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.71;MQ0=0;MQRankSum=1.295;QD=17.57;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:18,20:38:99:698,0,442
2    96614383    rs74839781    A    G    74.85    QDFilter2    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=2.044;DB;DP=40;Dels=0.0;FS=2.44;HRun=0;HaplotypeScore=0.0;MQ=55.95;MQ0=0;MQRankSum=-3.834;QD=1.87;ReadPosRankSum=-2.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:34,6:40:99:105,0,1049
2    96614407    rs77346146    G    A    74.86    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.199;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.75;MQ0=0;MQRankSum=-4.281;QD=2.02;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:28,8:37:99:105,0,1039
2    96614424    rs148880632    G    T    98.93    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.9;MQ0=0;MQRankSum=-4.266;QD=3.41;ReadPosRankSum=1.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:20,9:29:99:129,0,744
2    96614434    .    A    AC    217.88    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.757;DP=26;FS=0.0;HRun=2;HaplotypeScore=172.9474;IndelType=I;MQ=49.17;MQ0=0;MQRankSum=-3.468;QD=7.26;ReadPosRankSum=1.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:18,12:26:99:257,0,682
2    96614520    rs112706144    A    G    51.45    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.99;MQ0=0;MQRankSum=-1.38;QD=8.58;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:2,4:6:64.92:81,0,65
2    96616442    rs74960926    C    A    160.17    MQFilter40    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.067;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9048;MQ=38.76;MQ0=0;MQRankSum=-6.842;QD=2.26;ReadPosRankSum=3.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:38,33:71:99:190,0,1362
2    96616448    rs76503749    G    T    148.19    MQFilter40;QDFilter2    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=5.477;DB;DP=79;Dels=0.0;FS=2.36;HRun=0;HaplotypeScore=0.9469;MQ=39.55;MQ0=0;MQRankSum=-6.928;QD=1.88;ReadPosRankSum=3.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:45,34:79:99:178,0,1348
2    96616485    rs78218362    C    G    208.17    MQFilter40    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=103;Dels=0.0;FS=5.078;HRun=0;HaplotypeScore=2.761;MQ=32.04;MQ0=15;MQRankSum=-5.314;QD=2.02;ReadPosRankSum=-3.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:65,38:103:99:238,0,1466
2    96616758    rs79038786    T    C    74.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.01;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
2    96616839    rs76266192    G    T    36.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.81;MQ0=0;QD=18.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
2    96616997    rs74701498    T    G    42.91    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=50.33;MQ0=0;MQRankSum=-2.546;QD=2.86;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:11,4:15:72.91:73,0,374
2    96617023    rs78346055    C    A    104.74    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.996;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3334;MQ=46.76;MQ0=2;MQRankSum=-2.935;QD=3.88;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:20,7:27:99:135,0,581
2    96617025    rs72492186    C    A    105.30    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.3334;MQ=46.18;MQ0=2;MQRankSum=-2.906;QD=4.05;ReadPosRankSum=1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:18,8:26:99:135,0,534
2    96617039    .    A    AC    83.48    PASS    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DP=35;FS=0.0;HRun=0;HaplotypeScore=392.5419;IndelType=I;MQ=47.39;MQ0=3;MQRankSum=-3.359;QD=2.14;ReadPosRankSum=3.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:34,5:35:99:123,0,888
2    96617069    rs72935831    A    G    160.19    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=58;Dels=0.0;FS=5.196;HRun=0;HaplotypeScore=0.0;MQ=48.29;MQ0=6;MQRankSum=-4.695;QD=2.76;ReadPosRankSum=-0.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:47,11:58:99:190,0,935
2    96617090    rs72935833    A    G    46.34    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=0.142;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.46;MQ0=6;MQRankSum=-4.48;QD=0.74;ReadPosRankSum=-1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:54,9:63:76.33:76,0,1340
2    96617194    rs75924615    A    G    38.18    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=1.729;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=47.05;MQ0=5;MQRankSum=-3.804;QD=0.72;ReadPosRankSum=1.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:44,8:53:68.17:68,0,1366
2    96617209    rs74343816    G    T    57.47    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.464;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=46.04;MQ0=6;MQRankSum=-4.264;QD=1.11;ReadPosRankSum=0.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:43,9:52:87.47:87,0,1368
2    96617231    rs2443879    G    A    67.61    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.06;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9724;MQ=45.64;MQ0=5;MQRankSum=-3.636;QD=2.05;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:20,13:33:97.61:98,0,728
2    96619559    .    T    A    163.33    MQFilter40    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.98;MQ0=4;MQRankSum=-2.855;QD=9.61;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:4,13:17:99:193,0,127
2    96619612    rs143611798    C    T    386.93    MQFilter40    AB=0.27;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.592;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.99;MQ0=8;MQRankSum=-4.382;QD=10.46;ReadPosRankSum=1.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:10,27:37:99:417,0,341
2    96619641    .    A    C    31.47    MQFilter40;QDFilter2    AB=0.255;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.299;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.81;MQ=34.74;MQ0=11;MQRankSum=-4.849;QD=0.67;ReadPosRankSum=-0.889;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:12,35:47:61.46:61,0,457
2    96619642    .    A    T    31.47    MQFilter40;QDFilter2    AB=0.255;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.319;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.81;MQ=34.74;MQ0=11;MQRankSum=-4.849;QD=0.67;ReadPosRankSum=-0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:12,35:47:61.46:61,0,458
2    96619688    rs74946480    T    G    1211.36    MQFilter40    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.261;DB;DP=107;Dels=0.0;FS=6.319;HRun=0;HaplotypeScore=4.8587;MQ=38.65;MQ0=12;MQRankSum=-5.784;QD=11.22;ReadPosRankSum=1.004;SNPEFF_AMINO_ACID_CHANGE=E401A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96619687_96619753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:30,77:107:99:1241,0,844
2    96619734    rs62154618    C    T    1287.48    HaplotypeScoreFilter13    AB=0.293;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.065;DB;DP=124;Dels=0.01;FS=2.816;HRun=0;HaplotypeScore=33.3292;MQ=40.39;MQ0=5;MQRankSum=-6.087;QD=10.3;ReadPosRankSum=-0.774;SNPEFF_AMINO_ACID_CHANGE=A386T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96619687_96619753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:36,87:124:99:1317,0,939
2    96619735    .    A    G    625.03    HaplotypeScoreFilter13    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.585;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=33.3292;MQ=40.68;MQ0=5;MQRankSum=-2.645;QD=4.88;ReadPosRankSum=-0.347;SNPEFF_AMINO_ACID_CHANGE=D385;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96619687_96619753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:72,56:128:99:655,0,1583
2    96619774    rs77522461    G    A    734.28    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.048;DB;DP=69;Dels=0.0;FS=3.37;HRun=1;HaplotypeScore=1.8319;MQ=43.9;MQ0=1;MQRankSum=-5.054;QD=10.64;ReadPosRankSum=1.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:26,43:69:99:764,0,847
2    96619799    rs145806545    A    C    680.35    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=0.216;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8688;MQ=43.09;MQ0=0;MQRankSum=-4.652;QD=11.53;ReadPosRankSum=0.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:20,39:59:99:710,0,670
2    96619832    rs79037822    A    G    174.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.075;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.5873;MQ=44.35;MQ0=1;MQRankSum=-4.116;QD=4.98;ReadPosRankSum=-1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:12,20:35:99:204,0,416
2    96619853    .    T    C    114.30    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7895;MQ=44.06;MQ0=1;MQRankSum=-3.0;QD=4.97;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:13,10:23:99:144,0,389
2    96619873    rs111807008    C    A    195.11    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.883;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=43.95;MQ0=1;MQRankSum=-1.766;QD=10.27;ReadPosRankSum=-0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:10,9:19:99:225,0,263
2    96622347    rs142454455    C    T    38.55    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9142;MQ=31.37;MQ0=0;MQRankSum=0.573;QD=4.28;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:6,3:9:68.54:69,0,119
2    96626030    rs7566050    T    C    77.99    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=0.727;QD=19.5;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:108,0,25
2    96626292    rs4362598    C    T    767.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.41;MQ0=1;QD=30.7;SNPEFF_AMINO_ACID_CHANGE=G311D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96626221_96626293;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    1/1:0,25:25:72.20:801,72,0
2    96627942    rs78301520    T    C    83.70    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.31;MQ0=2;MQRankSum=-3.308;QD=4.65;ReadPosRankSum=2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:6,12:18:99:114,0,194
2    96627949    rs116292556    G    A    88.59    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=37.31;MQ0=2;MQRankSum=-3.308;QD=4.92;ReadPosRankSum=2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:6,12:18:99:119,0,153
2    96627959    rs117426905    A    G    79.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=40.16;MQ0=2;MQRankSum=-3.599;QD=3.98;ReadPosRankSum=2.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:8,12:20:99:110,0,291
2    96627980    rs75281835    A    G    67.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.09;MQ0=2;MQRankSum=-3.989;QD=2.81;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:12,12:24:97.51:98,0,440
2    96628443    rs79028115    C    T    123.13    MQFilter40    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.396;DB;DP=51;Dels=0.0;FS=3.938;HRun=0;HaplotypeScore=0.8941;MQ=35.91;MQ0=0;MQRankSum=-5.045;QD=2.41;ReadPosRankSum=2.812;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:35,16:51:99:153,0,1036
2    96628454    rs80053599    T    C    138.16    MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=45;Dels=0.0;FS=3.537;HRun=0;HaplotypeScore=0.5784;MQ=37.34;MQ0=0;MQRankSum=-4.944;QD=3.07;ReadPosRankSum=3.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:29,16:45:99:168,0,881
2    96628490    rs76756953    A    T    47.27    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.39;MQ0=0;MQRankSum=-3.923;QD=2.15;ReadPosRankSum=-2.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:10,12:22:77.26:77,0,357
2    96647856    rs4144055    G    T    236.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.296;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.53;QD=13.13;ReadPosRankSum=-0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:9,9:18:99:266,0,312
2    96657575    rs62155511    A    G    35.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=7.17;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073995.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456556    GT:AD:DP:GQ:PL    0/1:3,2:5:59.35:66,0,59
2    96679384    rs2579517    C    T    116.18    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=13;Dels=0.0;FS=3.802;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=8.94;ReadPosRankSum=-1.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC013272.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427863    GT:AD:DP:GQ:PL    0/1:7,5:13:99:146,0,245
2    96679740    rs2438978    G    C    88.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.11;ReadPosRankSum=-0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC013272.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427863    GT:AD:DP:GQ:PL    0/1:4,4:8:99:119,0,137
2    96684876    rs2579516    A    G    273.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=27.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359548    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:307,24,0
2    96685021    rs2969475    A    G    226.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=15;Dels=0.0;FS=2.963;HRun=2;HaplotypeScore=1.6609;MQ=48.25;MQ0=0;MQRankSum=-1.776;QD=15.1;ReadPosRankSum=0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359548    GT:AD:DP:GQ:PL    0/1:5,10:15:99:256,0,167
2    96780716    rs2229169    T    G    380.80    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.295;DB;DP=42;Dels=0.0;FS=7.521;HRun=0;HaplotypeScore=1.4972;MQ=59.45;MQ0=0;MQRankSum=1.601;QD=9.07;ReadPosRankSum=-0.066;SNPEFF_AMINO_ACID_CHANGE=G391;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96778707_96781984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409345    GT:AD:DP:GQ:PL    0/1:25,17:42:99:411,0,721
2    96789787    rs893173    T    C    802.29    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=49;Dels=0.0;FS=1.126;HRun=1;HaplotypeScore=1.367;MQ=59.05;MQ0=0;MQRankSum=0.79;QD=16.37;ReadPosRankSum=-0.85;SNPEFF_AMINO_ACID_CHANGE=L366;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96789589_96790010;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342380    GT:AD:DP:GQ:PL    0/1:24,25:49:99:832,0,745
2    96795608    rs1657502    T    G    389.44    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.998;DB;DP=35;Dels=0.0;FS=3.329;HRun=1;HaplotypeScore=0.5784;MQ=58.67;MQ0=0;MQRankSum=-1.033;QD=11.13;ReadPosRankSum=-0.31;SNPEFF_AMINO_ACID_CHANGE=K277Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96795563_96795717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342380    GT:AD:DP:GQ:PL    0/1:17,18:35:99:419,0,513
2    96795714    rs749459    G    A    270.28    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.135;DB;DP=22;Dels=0.0;FS=1.719;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=12.29;ReadPosRankSum=0.601;SNPEFF_AMINO_ACID_CHANGE=L241;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96795563_96795717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342380    GT:AD:DP:GQ:PL    0/1:13,9:22:99:300,0,388
2    96795857    rs749458    T    C    625.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.91;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=12.5;ReadPosRankSum=0.66;SNPEFF_AMINO_ACID_CHANGE=Q222R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96795803_96795884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342380    GT:AD:DP:GQ:PL    0/1:25,25:50:99:655,0,793
2    96795944    rs749457    A    G    255.73    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.039;QD=11.12;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470582    GT:AD:DP:GQ:PL    0/1:14,9:23:99:286,0,497
2    96798510    rs1168966    G    A    380.91    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.219;DB;DP=20;Dels=0.0;FS=2.865;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=0.833;QD=19.05;ReadPosRankSum=-0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470582    GT:AD:DP:GQ:PL    0/1:6,13:20:99:411,0,200
2    96944553    rs772175    G    A    563.10    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.25;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.45;QD=16.09;ReadPosRankSum=-0.783;SNPEFF_AMINO_ACID_CHANGE=L1773;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_96944547_96944736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP200;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323853    GT:AD:DP:GQ:PL    0/1:15,20:35:99:593,0,464
2    96956315    rs55924829    T    G    3996.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.79;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP200;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323853    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3996,304,0
2    96991492    rs772174    A    G    281.96    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=0.392;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.4;MQ0=0;MQRankSum=-0.392;QD=9.1;ReadPosRankSum=-0.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPRIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420176    GT:AD:DP:GQ:PL    0/1:20,11:31:99:312,0,711
2    97166204    rs3731938    A    G    118.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=14;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=8.46;ReadPosRankSum=2.001;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEURL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310865    GT:AD:DP:GQ:PL    0/1:8,6:14:99:148,0,219
2    97284917    rs12329128    G    A    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1310;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354204    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    97366303    rs2280355    A    G    270.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397978    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:304,24,0
2    97400324    rs6727384    A    G    211.15    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=13.2;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMAN2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264963    GT:AD:DP:GQ:PL    0/1:9,7:16:99:241,0,298
2    97463095    rs1318597    T    C    209.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=13;Dels=0.0;FS=7.16;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=16.1;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377075    GT:AD:DP:GQ:PL    0/1:6,7:13:99:239,0,203
2    97463529    rs7582249    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482716    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
2    97529360    rs59271006    T    A    643.96    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=1.727;DB;DP=34;Dels=0.0;FS=2.582;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.422;QD=18.94;ReadPosRankSum=-0.767;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442264    GT:AD:DP:GQ:PL    0/1:13,21:34:99:674,0,367
2    97543936    rs12473528    T    C    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
2    97544089    rs6750988    G    C    69.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.82;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327896    GT:AD:DP:GQ:PL    0/1:2,3:5:48.93:99,0,49
2    97559759    rs11677797    G    A    187.07    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=17;Dels=0.0;FS=1.913;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=11.0;ReadPosRankSum=0.049;SNPEFF_AMINO_ACID_CHANGE=L528;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97559663_97559788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327896    GT:AD:DP:GQ:PL    0/1:7,10:17:99:217,0,212
2    97595109    rs6725927    T    C    560.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327896    GT:AD:DP:GQ:PL    1/1:0,20:20:48.14:594,48,0
2    97613616    rs1624844    T    C    192.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.09;SNPEFF_AMINO_ACID_CHANGE=T307;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97613555_97613639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327896    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:226,18,0
2    97617140    rs1257019    T    C    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_AMINO_ACID_CHANGE=V291;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97617116_97617221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
2    97617227    rs1257018    A    G    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    97637905    rs6715329    T    C    98.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=19.6;SNPEFF_AMINO_ACID_CHANGE=I247M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97637638_97638059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417561    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:131,12,0
2    97643576    rs1796048    T    C    1588.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8069;MQ=59.52;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=Q165;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97643554_97643669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417561    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1621,120,0
2    97693966    rs1669771    A    G    2869.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.97;MQ0=0;QD=29.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422468    GT:AD:DP:GQ:PL    1/1:0,97:97:99:2902,244,0
2    97695225    rs1256988    A    C    1359.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.35;MQ0=38;QD=15.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422468    GT:AD:DP:GQ:PL    1/1:0,90:90:99:1392,126,0
2    97711764    rs1148593    A    G    346.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.0;MQ0=0;QD=28.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450846    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:379,33,0
2    97712339    rs1257117    C    A    3221.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=34.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450846    GT:AD:DP:GQ:PL    1/1:1,93:94:99:3255,244,0
2    97712540    rs1257116    A    G    2096.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.581;MQ=44.97;MQ0=3;QD=27.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450846    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2129,177,0
2    97712581    rs1257115    A    C    1440.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=29.26;MQ0=3;QD=24.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450846    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1473,132,0
2    97712730    rs1730116    G    T    720.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.65;MQ0=4;QD=20.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450846    GT:AD:DP:GQ:PL    1/1:4,32:36:78.05:754,78,0
2    97712731    rs1669758    C    T    724.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.65;MQ0=4;QD=20.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450846    GT:AD:DP:GQ:PL    1/1:4,32:36:78.05:757,78,0
2    97726087    rs1148586    T    C    1719.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.39;MQ0=6;QD=22.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018892.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377032    GT:AD:DP:GQ:PL    1/1:0,75:75:99:1753,156,0
2    97747894    rs1257095    T    C    907.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.69;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAHD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272610    GT:AD:DP:GQ:PL    1/1:0,30:30:87.16:940,87,0
2    97747978    rs1257094    C    T    400.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.65;MQ0=2;QD=22.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAHD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272610    GT:AD:DP:GQ:PL    1/1:0,18:18:39.09:434,39,0
2    97749417    rs140620633    C    T    40.63    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.501;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.04;MQ0=0;MQRankSum=-1.371;QD=2.71;ReadPosRankSum=0.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAHD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463096    GT:AD:DP:GQ:PL    0/1:11,4:15:70.62:71,0,396
2    97757509    rs1257084    C    T    1280.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.65;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAHD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272610    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1313,105,0
2    97783657    rs144148080    T    C    413.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.18;MQ0=1;QD=27.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,15:15:39.08:446,39,0
2    97784295    .    C    A    1504.71    MQFilter40    AC=2;AF=1.00;AN=2;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.91;MQ0=41;QD=16.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:22,72:94:99:1538,135,0
2    97789020    rs11693818    T    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.11;MQ0=1;QD=8.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452478    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
2    97808198    rs56786098    G    A    551.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.85;MQ0=17;QD=12.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,44:44:63.03:584,63,0
2    97808314    .    G    T    940.40    MQFilter40    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.668;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9899;MQ=26.58;MQ0=62;MQRankSum=-2.521;QD=3.76;ReadPosRankSum=1.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:144,106:250:99:970,0,2282
2    97808349    rs62153043    T    C    468.63    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.431;DB;DP=246;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.9112;MQ=27.48;MQ0=73;MQRankSum=-8.285;QD=1.9;ReadPosRankSum=0.338;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:90,156:246:99:499,0,2356
2    97808394    rs62153044    C    G    1599.52    FSFilter60;MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=3.429;DB;DP=250;DS;Dels=0.0;FS=107.307;HRun=0;HaplotypeScore=0.0;MQ=34.13;MQ0=52;MQRankSum=-9.612;QD=6.4;ReadPosRankSum=-4.103;SNPEFF_AMINO_ACID_CHANGE=P273A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97808377_97808405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    0/1:92,158:250:99:1630,0,2739
2    97808429    rs112299457    T    G    32.46    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.428;DB;DP=230;DS;Dels=0.0;FS=15.986;HRun=0;HaplotypeScore=14.7717;MQ=37.41;MQ0=28;MQRankSum=-3.714;QD=0.14;ReadPosRankSum=0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:195,35:230:62.45:62,0,4814
2    97808495    rs62153045    C    T    325.38    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.701;DB;DP=143;DS;Dels=0.0;FS=36.978;HRun=1;HaplotypeScore=4.0816;MQ=51.8;MQ0=3;MQRankSum=-8.766;QD=2.28;ReadPosRankSum=-3.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:105,38:143:99:355,0,3660
2    97812209    rs79613735    T    A    33.64    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.547;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.64;MQ0=2;MQRankSum=-4.875;QD=0.6;ReadPosRankSum=-0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:44,12:56:63.63:64,0,1398
2    97812263    rs192099359    T    C    145.02    QDFilter2    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=0.73;DB;DP=77;Dels=0.0;FS=1.316;HRun=0;HaplotypeScore=0.0;MQ=49.56;MQ0=7;MQRankSum=-5.516;QD=1.88;ReadPosRankSum=-1.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:54,23:77:99:175,0,1678
2    97812296    .    T    G    174.01    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=3.439;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.35;MQ0=6;MQRankSum=-4.681;QD=2.76;ReadPosRankSum=3.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:43,20:63:99:204,0,1375
2    97812323    rs79598281    A    G    207.70    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.883;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.15;MQ0=4;MQRankSum=-4.451;QD=5.33;ReadPosRankSum=1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:22,17:39:99:238,0,798
2    97812327    rs75341630    A    G    232.92    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.319;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.4;MQ0=3;MQRankSum=-4.217;QD=6.3;ReadPosRankSum=0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:21,16:37:99:263,0,785
2    97814956    rs4386368    G    A    566.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.38;MQ0=0;QD=37.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:600,45,0
2    97817511    rs62153867    T    C    52.25    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.69;MQ0=2;MQRankSum=-0.406;QD=6.53;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:5,3:8:82.25:82,0,98
2    97817545    rs80259985    A    T    58.29    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.39;MQ0=5;MQRankSum=0.727;QD=5.83;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:7,3:10:21.40:88,0,21
2    97817578    rs113800206    T    C    55.26    MQFilter40    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=11;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=29.73;MQ0=6;MQRankSum=-1.231;QD=5.02;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:8,3:11:68.95:85,0,69
2    97818146    rs145799985    G    A    54.57    MQFilter40    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.139;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.05;MQ0=1;MQRankSum=-3.179;QD=2.02;ReadPosRankSum=1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:20,7:27:84.56:85,0,585
2    97818161    rs74715701    C    A    89.58    MQFilter40    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.901;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=37.74;MQ0=0;MQRankSum=-4.256;QD=2.49;ReadPosRankSum=0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:26,10:36:99:120,0,800
2    97818169    rs76008235    C    T    65.51    QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.571;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.22;MQ0=0;MQRankSum=-4.439;QD=1.49;ReadPosRankSum=0.938;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:34,10:44:95.51:96,0,1063
2    97818283    rs112336445    G    C    34.13    MQFilter40;QDFilter2    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=0.021;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.22;MQ0=10;MQRankSum=-3.125;QD=0.39;ReadPosRankSum=3.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:68,19:87:64.12:64,0,1607
2    97818348    rs58438329    A    G    940.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.79;MQ0=0;QD=36.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:974,75,0
2    97820332    rs77426384    C    A    47.71    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.925;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=54.4;MQ0=0;MQRankSum=-2.626;QD=2.07;ReadPosRankSum=0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:17,6:23:77.71:78,0,629
2    97820373    rs77468616    T    C    41.38    QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;MQRankSum=-2.648;QD=1.18;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:29,6:35:71.38:71,0,992
2    97823971    rs13011421    T    C    1727.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.825;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=55.97;MQ0=0;MQRankSum=3.632;QD=33.23;ReadPosRankSum=1.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:5,47:52:99:1761,138,0
2    97827737    rs76168297    C    T    140.51    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.602;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=34.69;MQ0=2;MQRankSum=-1.602;QD=5.02;ReadPosRankSum=-0.728;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:9,18:28:99:171,0,245
2    97827757    rs76324746    A    G    181.89    MQFilter40    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.562;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.33;MQ0=2;MQRankSum=-2.413;QD=5.51;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:13,20:33:99:212,0,385
2    97827787    rs113653147    G    A    323.70    MQFilter40    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=43;Dels=0.0;FS=5.932;HRun=1;HaplotypeScore=0.9867;MQ=36.41;MQ0=1;MQRankSum=-2.986;QD=7.53;ReadPosRankSum=1.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:18,25:43:99:354,0,458
2    97827800    rs111338734    A    G    328.03    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.344;DB;DP=48;Dels=0.0;FS=2.127;HRun=0;HaplotypeScore=0.9867;MQ=33.64;MQ0=2;MQRankSum=-2.424;QD=6.83;ReadPosRankSum=-0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:20,28:48:99:358,0,491
2    97827818    rs34725305    C    CT    413.70    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.592;DB;DP=35;FS=1.585;HRun=12;HaplotypeScore=280.8606;IndelType=I;MQ=36.96;MQ0=4;MQRankSum=-1.491;QD=8.99;ReadPosRankSum=3.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:21,24:35:99:453,0,126
2    97827830    .    T    A    114.15    MQFilter40    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=0.587;DP=45;Dels=0.0;FS=3.79;HRun=2;HaplotypeScore=7.9405;MQ=37.78;MQ0=4;MQRankSum=1.307;QD=2.54;ReadPosRankSum=-0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:39,6:45:99:144,0,297
2    97827839    .    G    A    353.72    MQFilter40    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.714;DP=43;Dels=0.0;FS=1.428;HRun=2;HaplotypeScore=5.9936;MQ=37.88;MQ0=4;MQRankSum=-0.532;QD=8.23;ReadPosRankSum=0.623;SNPEFF_AMINO_ACID_CHANGE=G465R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97827836_97827875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    0/1:22,21:43:99:384,0,492
2    97827912    .    G    C    85.79    MQFilter40    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DP=34;Dels=0.0;FS=2.788;HRun=0;HaplotypeScore=0.6651;MQ=34.27;MQ0=1;MQRankSum=-4.154;QD=2.52;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:16,18:34:99:116,0,457
2    97827954    .    G    A    30.73    MQFilter40;QDFilter2    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=33.94;MQ0=0;MQRankSum=-2.742;QD=1.81;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:9,8:17:60.72:61,0,248
2    97829925    rs189153991    C    G    32.63    MQFilter40;QDFilter2    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.66;MQ0=53;MQRankSum=-2.871;QD=0.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:41,35:76:62.62:63,0,294
2    97829984    .    A    C    114.30    MQFilter40;QDFilter2    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=4.85;DP=145;Dels=0.0;FS=12.842;HRun=2;HaplotypeScore=0.7887;MQ=12.71;MQ0=96;MQRankSum=-3.742;QD=0.79;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:82,62:145:99:144,0,425
2    97829998    .    A    T    93.25    MQFilter40;QDFilter2    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.183;DP=173;Dels=0.0;FS=11.769;HRun=2;HaplotypeScore=0.9159;MQ=13.75;MQ0=107;MQRankSum=-5.72;QD=0.54;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:90,83:173:99:123,0,651
2    97830012    .    C    T    108.94    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.166;DP=183;Dels=0.01;FS=18.248;HRun=3;HaplotypeScore=17.3678;MQ=13.68;MQ0=109;MQRankSum=-5.33;QD=0.59;ReadPosRankSum=-0.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:87,96:183:99:139,0,688
2    97830053    rs112213180    A    G    95.50    MQFilter40;QDFilter2    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.04;DB;DP=218;Dels=0.0;FS=3.267;HRun=0;HaplotypeScore=0.0;MQ=14.89;MQ0=128;MQRankSum=-5.896;QD=0.44;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:100,118:218:99:125,0,1091
2    97830104    rs62153886    G    A    875.80    HaplotypeScoreFilter13;MQFilter40    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=237;DS;Dels=0.0;FS=0.733;HRun=0;HaplotypeScore=17.7922;MQ=25.63;MQ0=81;MQRankSum=-7.977;QD=3.7;ReadPosRankSum=2.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:85,132:237:99:906,0,1767
2    97833159    rs80186109    T    A    65.31    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.634;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.75;MQ0=3;MQRankSum=-2.055;QD=3.27;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:8,12:20:95.30:95,0,152
2    97833193    rs75122869    G    A    496.61    MQFilter40    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.429;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=27.15;MQ0=3;MQRankSum=-3.976;QD=8.56;ReadPosRankSum=1.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:24,34:58:99:527,0,567
2    97833342    rs5008284    G    A    811.07    MQFilter40    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.238;DB;DP=208;DS;Dels=0.0;FS=19.597;HRun=0;HaplotypeScore=1.7987;MQ=21.68;MQ0=60;MQRankSum=-3.79;QD=3.9;ReadPosRankSum=0.912;SNPEFF_AMINO_ACID_CHANGE=T520;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97833314_97833342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    0/1:91,117:208:99:841,0,1385
2    97833361    rs1358633    A    G    611.67    MQFilter40    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.105;DB;DP=189;DS;Dels=0.0;FS=10.993;HRun=0;HaplotypeScore=9.9703;MQ=24.52;MQ0=41;MQRankSum=-4.679;QD=3.24;ReadPosRankSum=-1.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:93,84:189:99:642,0,1846
2    97833394    rs1636143    C    T    207.07    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DB;DP=157;DS;Dels=0.0;FS=9.416;HRun=0;HaplotypeScore=56.2243;MQ=31.41;MQ0=7;MQRankSum=-3.401;QD=1.32;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:119,37:157:99:237,0,2813
2    97833399    .    C    T    202.56    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.13;DP=159;DS;Dels=0.0;FS=26.84;HRun=0;HaplotypeScore=65.1763;MQ=32.95;MQ0=2;MQRankSum=-4.978;QD=1.27;ReadPosRankSum=-0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:103,56:159:99:233,0,2705
2    97833401    rs5832832    T    TATTAATCA    3447.12    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=8.575;DB;DP=137;FS=35.899;HRun=0;HaplotypeScore=1199.216;IndelType=I;MQ=32.1;MQ0=6;MQRankSum=-0.807;QD=20.04;ReadPosRankSum=-1.856;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:121,35:137:99:3447,0,6773
2    97833466    rs112133169    C    T    1445.35    MQFilter40    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.289;DB;DP=242;DS;Dels=0.0;FS=37.785;HRun=0;HaplotypeScore=3.2698;MQ=23.93;MQ0=78;MQRankSum=-0.41;QD=5.97;ReadPosRankSum=1.927;SNPEFF_AMINO_ACID_CHANGE=A532V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97833432_97833504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    0/1:99,142:242:99:1475,0,1525
2    97833553    rs76811792    C    T    1653.03    MQFilter40    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=3.485;DB;DP=160;DS;Dels=0.0;FS=5.973;HRun=1;HaplotypeScore=10.9716;MQ=24.7;MQ0=31;MQRankSum=-0.514;QD=10.33;ReadPosRankSum=0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:56,104:160:99:1683,0,915
2    97833567    rs76160111    A    G    1645.48    HaplotypeScoreFilter13;MQFilter40    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.022;DB;DP=150;DS;Dels=0.0;FS=11.574;HRun=1;HaplotypeScore=13.4371;MQ=27.23;MQ0=16;MQRankSum=-1.199;QD=10.97;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:69,80:150:99:1675,0,1256
2    97833569    rs78400826    C    T    1989.19    HaplotypeScoreFilter13;MQFilter40    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.34;DB;DP=147;DS;Dels=0.0;FS=2.597;HRun=0;HaplotypeScore=14.4318;MQ=27.63;MQ0=13;MQRankSum=-1.449;QD=13.53;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:52,95:147:99:2019,0,950
2    97833583    rs72945197    C    T    2440.12    MQFilter40    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=4.297;DB;DP=145;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9944;MQ=29.34;MQ0=7;MQRankSum=-2.038;QD=16.83;ReadPosRankSum=-1.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:42,103:145:99:2470,0,858
2    97833651    rs72945198    C    A    1575.64    MQFilter40    AB=0.138;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=35.97;MQ0=0;MQRankSum=-2.334;QD=27.17;ReadPosRankSum=1.432;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:8,50:58:99:1606,0,148
2    97847272    .    GA    G    644.61    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=8.11;DP=137;FS=24.003;HRun=2;HaplotypeScore=673.8569;IndelType=D;MQ=41.28;MQ0=11;MQRankSum=-7.28;QD=4.3;ReadPosRankSum=-5.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:110,40:137:99:684,0,4374
2    97847303    .    G    A    488.77    MQFilter40    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.737;DP=179;Dels=0.0;FS=35.323;HRun=0;HaplotypeScore=9.3847;MQ=36.95;MQ0=29;MQRankSum=-6.024;QD=2.73;ReadPosRankSum=2.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:139,40:179:99:519,0,3527
2    97847317    .    T    A    466.62    MQFilter40    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.623;DP=195;Dels=0.0;FS=48.092;HRun=0;HaplotypeScore=1.6439;MQ=37.58;MQ0=29;MQRankSum=-5.824;QD=2.39;ReadPosRankSum=7.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:155,40:195:99:497,0,3826
2    97847606    rs2443851    A    G    51.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=12.41;MQ0=11;QD=2.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,20:20:9:84,9,0
2    97849219    rs12996352    T    C    3748.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6208;MQ=55.64;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=W621R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97849196_97849224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3749,301,0
2    97851069    rs62154801    A    G    5857.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=185;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7128;MQ=43.54;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=Q14;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97851053_97851081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000461694    GT:AD:DP:GQ:PL    1/1:0,184:185:99:5858,457,0
2    97856461    rs62154807    G    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.9;MQ0=0;QD=9.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:78,6,0
2    97860223    rs4530406    C    T    240.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=43.29;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
2    97860487    rs59466168    T    C    3157.45    MQFilter40    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.391;DB;DP=236;DS;Dels=0.0;FS=23.329;HRun=0;HaplotypeScore=4.4418;MQ=30.49;MQ0=46;MQRankSum=0.827;QD=13.38;ReadPosRankSum=0.628;SNPEFF_AMINO_ACID_CHANGE=L187S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97860463_97860491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461694    GT:AD:DP:GQ:PL    0/1:103,133:236:99:3187,0,1371
2    97860738    rs62154813    A    G    170.22    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.198;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=54.79;MQ0=0;MQRankSum=-0.37;QD=5.32;ReadPosRankSum=0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:23,9:32:99:200,0,790
2    97862260    rs1901501    T    A    3733.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3734,277,0
2    97862396    rs7573581    G    A    3407.18    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.738;DB;DP=145;Dels=0.0;FS=6.912;HRun=0;HaplotypeScore=1.3123;MQ=59.23;MQ0=0;MQRankSum=-1.11;QD=23.5;ReadPosRankSum=0.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:43,102:145:99:3407,0,1191
2    97862656    rs4577322    C    T    267.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.83;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:300,24,0
2    97864288    rs56159881    T    C    4827.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=52.31;MQ0=2;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,146:146:99:4827,379,0
2    97864333    rs61218502    C    A    2590.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=39.24;MQ0=6;QD=25.39;SNPEFF_AMINO_ACID_CHANGE=A260D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97864323_97864395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461694    GT:AD:DP:GQ:PL    1/1:0,102:102:99:2623,217,0
2    97864334    rs56835800    C    T    2605.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=38.97;MQ0=6;QD=25.79;SNPEFF_AMINO_ACID_CHANGE=A260;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97864323_97864395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000461694    GT:AD:DP:GQ:PL    1/1:0,101:101:99:2638,220,0
2    97864374    rs60795069    G    T    1863.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2312;MQ=28.43;MQ0=7;QD=24.85;SNPEFF_AMINO_ACID_CHANGE=D274Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97864323_97864395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461694    GT:AD:DP:GQ:PL    1/1:0,75:75:99:1897,171,0
2    97865829    rs1839920    A    G    187.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-1.447;QD=18.76;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:4,6:10:99:218,0,136
2    97866299    rs56289967    C    A    489.15    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.02;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.89;MQ0=0;MQRankSum=0.902;QD=11.65;ReadPosRankSum=1.138;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455519    GT:AD:DP:GQ:PL    0/1:23,19:42:99:519,0,743
2    97866370    rs55879702    A    G    226.91    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.975;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=11.35;ReadPosRankSum=-0.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455519    GT:AD:DP:GQ:PL    0/1:11,9:20:99:257,0,406
2    97867870    rs9324211    G    C    4452.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7923;MQ=59.81;MQ0=0;QD=36.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455519    GT:AD:DP:GQ:PL    1/1:0,121:122:99:4452,328,0
2    97869539    rs6577003    A    G    129.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.48;MQ0=0;MQRankSum=-0.742;QD=18.47;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455519    GT:AD:DP:GQ:PL    1/1:1,6:7:15.02:162,15,0
2    97870051    rs6577004    G    A    736.36    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.59;MQ0=0;MQRankSum=-1.263;QD=16.36;ReadPosRankSum=-1.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    0/1:21,24:45:99:766,0,615
2    97871442    rs4524160    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.99;MQ0=1;QD=16.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:82,6,0
2    97873393    rs6718582    C    T    614.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=46.54;MQ0=1;QD=30.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:0,19:20:51.16:648,51,0
2    97873515    rs4063410    C    T    1789.56    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.541;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.8;MQ0=16;MQRankSum=-0.974;QD=22.37;ReadPosRankSum=0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:1,79:80:99:1823,130,0
2    97873630    rs12052928    A    T    2824.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=40.05;MQ0=7;MQRankSum=-0.726;QD=27.96;ReadPosRankSum=-0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289105    GT:AD:DP:GQ:PL    1/1:3,97:100:99:2857,193,0
2    97875309    .    T    C    75.45    MQFilter40;QDFilter2    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.35;MQ0=9;MQRankSum=-4.59;QD=0.8;ReadPosRankSum=1.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393513    GT:AD:DP:GQ:PL    0/1:73,21:94:99:105,0,2251
2    97877003    rs12995537    C    T    221.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.39;MQ0=0;QD=27.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393513    GT:AD:DP:GQ:PL    1/1:1,7:8:21.06:254,21,0
2    97877292    rs10171441    C    A    8504.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=242;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=58.11;MQ0=0;QD=35.14;SNPEFF_AMINO_ACID_CHANGE=P1126Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97877283_97877311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    1/1:0,242:242:99:8504,617,0
2    97877399    rs10186233    T    C    5238.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6634;MQ=59.51;MQ0=0;QD=35.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393513    GT:AD:DP:GQ:PL    1/1:0,146:146:99:5238,400,0
2    97877440    rs35711845    T    C    4109.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=59.51;MQ0=0;QD=31.13;SNPEFF_AMINO_ACID_CHANGE=M1144T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97877406_97877478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4109,322,0
2    97879162    rs140729730    G    C    41.51    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=3.46;MQ0=176;QD=0.23;SNPEFF_AMINO_ACID_CHANGE=C1159S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97879156_97879184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    1/1:45,132:178:6.02:73,6,0
2    97883087    rs62156175    A    G    338.79    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.311;DB;DP=142;Dels=0.0;FS=6.042;HRun=2;HaplotypeScore=0.7887;MQ=42.37;MQ0=5;MQRankSum=-3.508;QD=2.39;ReadPosRankSum=-0.924;SNPEFF_AMINO_ACID_CHANGE=T1277;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_97883037_97883109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420699    GT:AD:DP:GQ:PL    0/1:112,30:142:99:369,0,3023
2    98018864    rs10199493    A    G    880.07    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=66;Dels=0.0;FS=23.322;HRun=1;HaplotypeScore=0.8941;MQ=59.58;MQ0=0;MQRankSum=-1.169;QD=13.33;ReadPosRankSum=0.081;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:34,32:66:99:910,0,1181
2    98129603    .    TAA    T    236.98    QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=5.017;DP=71;FS=0.0;HRun=2;HaplotypeScore=390.2469;IndelType=D;MQ=19.31;MQ0=41;MQRankSum=-5.05;QD=1.58;ReadPosRankSum=-0.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:123,27:71:99:276,0,3484
2    98129670    rs146414302    C    T    89.06    MQFilter40;QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.523;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9367;MQ=12.57;MQ0=94;MQRankSum=-2.129;QD=0.36;ReadPosRankSum=-0.404;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:209,39:249:99:119,0,898
2    98129682    rs140574837    T    C    103.75    MQFilter40;QDFilter2    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=2.743;DB;DP=240;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5514;MQ=12.62;MQ0=87;MQRankSum=-4.447;QD=0.43;ReadPosRankSum=-0.053;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:184,55:240:99:134,0,903
2    98129683    rs146417104    G    A    97.74    MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=240;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5514;MQ=12.98;MQ0=85;MQRankSum=-4.833;QD=0.41;ReadPosRankSum=0.014;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:193,47:240:99:128,0,964
2    98129744    rs141594775    C    T    472.07    FSFilter60;MQFilter40;QDFilter2    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DB;DP=250;DS;Dels=0.0;FS=67.314;HRun=2;HaplotypeScore=1.5717;MQ=19.48;MQ0=32;MQRankSum=-7.945;QD=1.89;ReadPosRankSum=-7.537;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:166,84:250:99:502,0,2657
2    98129817    .    T    C    603.07    MQFilter40    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.275;DP=230;DS;Dels=0.0;FS=34.759;HRun=0;HaplotypeScore=2.5528;MQ=15.13;MQ0=64;MQRankSum=-4.899;QD=2.61;ReadPosRankSum=1.772;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:121,109:230:99:633,0,1246
2    98162430    .    T    C    814.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.502;DP=30;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=3.9933;MQ=59.23;MQ0=0;MQRankSum=1.617;QD=27.16;ReadPosRankSum=-1.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443455    GT:AD:DP:GQ:PL    1/1:1,29:30:44.79:848,45,0
2    98163927    rs12993579    A    T    313.79    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.02;MQ0=0;MQRankSum=-3.528;QD=14.26;ReadPosRankSum=-1.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419390    GT:AD:DP:GQ:PL    0/1:10,12:22:99:344,0,335
2    98164084    rs13017744    T    A    1029.06    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.335;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6819;MQ=40.94;MQ0=1;MQRankSum=-3.217;QD=11.19;ReadPosRankSum=0.149;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419390    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1059,0,1358
2    98164184    rs13001728    C    G    1466.26    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.414;DB;DP=139;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1146;MQ=51.27;MQ0=0;MQRankSum=-1.475;QD=10.55;ReadPosRankSum=-0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419390    GT:AD:DP:GQ:PL    0/1:83,56:139:99:1496,0,2309
2    98164389    rs11691967    T    A    91.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.19;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419390    GT:AD:DP:GQ:PL    0/1:6,4:10:99:122,0,207
2    98164409    rs11683920    G    T    108.44    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=15.49;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419390    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,103
2    98166183    rs6750197    C    T    938.56    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=5.259;DB;DP=52;Dels=0.0;FS=2.433;HRun=0;HaplotypeScore=0.0;MQ=54.52;MQ0=0;MQRankSum=-0.96;QD=18.05;ReadPosRankSum=-1.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419390    GT:AD:DP:GQ:PL    0/1:22,30:52:99:969,0,655
2    98166215    rs6750205    C    G    510.10    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=4.604;DB;DP=35;Dels=0.0;FS=3.136;HRun=2;HaplotypeScore=0.8941;MQ=55.69;MQ0=0;MQRankSum=-0.974;QD=14.57;ReadPosRankSum=1.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419390    GT:AD:DP:GQ:PL    0/1:18,17:35:99:540,0,504
2    98168055    rs1972985    T    C    793.29    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DB;DP=55;Dels=0.0;FS=1.783;HRun=0;HaplotypeScore=0.0;MQ=58.61;MQ0=0;MQRankSum=0.009;QD=14.42;ReadPosRankSum=0.095;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:26,29:55:99:823,0,905
2    98169479    rs9677528    T    G    224.66    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=13;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=1.6316;MQ=52.84;MQ0=0;MQRankSum=0.825;QD=17.28;ReadPosRankSum=0.929;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:5,8:13:89.90:255,0,90
2    98169519    rs9679287    G    C    279.45    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.94;MQ0=0;MQRankSum=1.615;QD=12.7;ReadPosRankSum=0.626;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:12,10:22:99:309,0,420
2    98169544    rs9677087    C    G    240.64    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.07;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.85;MQ0=0;MQRankSum=-1.316;QD=6.5;ReadPosRankSum=-1.444;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:22,15:37:99:271,0,775
2    98169583    rs9679293    G    T    995.17    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=5.152;DB;DP=75;Dels=0.0;FS=10.956;HRun=3;HaplotypeScore=0.0;MQ=48.1;MQ0=2;MQRankSum=-6.087;QD=13.27;ReadPosRankSum=-0.197;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:37,38:75:99:1025,0,941
2    98169742    rs12998184    A    C    2299.31    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=2.632;DB;DP=140;Dels=0.0;FS=9.176;HRun=0;HaplotypeScore=0.0;MQ=54.37;MQ0=0;MQRankSum=0.342;QD=16.42;ReadPosRankSum=-0.073;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:62,78:140:99:2329,0,1941
2    98169901    rs12712055    G    T    710.92    MQFilter40    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.997;DB;DP=91;Dels=0.01;FS=1.174;HRun=0;HaplotypeScore=2.772;MQ=35.93;MQ0=6;MQRankSum=-1.896;QD=7.73;ReadPosRankSum=-0.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:51,40:91:99:741,0,1166
2    98171807    rs12712057    T    C    715.85    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.48;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.35;MQ0=0;MQRankSum=0.607;QD=10.37;ReadPosRankSum=0.224;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:41,28:69:99:746,0,1403
2    98173368    rs13015850    C    T    328.21    MQFilter40    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.365;DB;DP=79;Dels=0.0;FS=2.348;HRun=0;HaplotypeScore=0.0;MQ=29.04;MQ0=2;MQRankSum=-0.406;QD=4.15;ReadPosRankSum=0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:37,42:79:99:358,0,838
2    98173369    rs13025386    A    G    334.36    MQFilter40    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=80;Dels=0.0;FS=3.814;HRun=0;HaplotypeScore=0.0;MQ=28.99;MQ0=2;MQRankSum=-0.38;QD=4.18;ReadPosRankSum=0.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:38,41:80:99:364,0,871
2    98177124    rs11681640    T    G    1366.33    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.189;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9799;MQ=47.02;MQ0=4;MQRankSum=-2.247;QD=10.27;ReadPosRankSum=-0.132;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:75,58:133:99:1396,0,2094
2    98177305    rs114646833    C    G    281.83    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=3.289;DB;DP=99;Dels=0.0;FS=23.764;HRun=1;HaplotypeScore=0.0;MQ=41.65;MQ0=12;MQRankSum=-6.583;QD=2.85;ReadPosRankSum=1.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:64,35:99:99:312,0,1937
2    98195213    rs13427163    T    C    226.64    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.26;MQ0=0;MQRankSum=1.635;QD=18.89;ReadPosRankSum=2.367;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:5,7:12:99:257,0,149
2    98195581    rs13419462    C    T    176.48    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.112;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=43.16;MQ0=2;MQRankSum=-3.837;QD=3.68;ReadPosRankSum=-0.979;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:35,13:48:99:206,0,1237
2    98196707    rs7588718    G    T    203.37    MQFilter40    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.2;MQ0=0;MQRankSum=-0.751;QD=22.6;ReadPosRankSum=0.751;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:1,8:9:14.18:233,0,14
2    98196849    rs34131105    G    A    1592.20    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.098;DB;DP=87;Dels=0.0;FS=4.495;HRun=0;HaplotypeScore=1.7781;MQ=57.74;MQ0=0;MQRankSum=-2.671;QD=18.3;ReadPosRankSum=0.476;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:34,53:87:99:1622,0,1005
2    98196859    rs35904593    T    G    1678.81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.845;DB;DP=95;Dels=0.0;FS=1.034;HRun=1;HaplotypeScore=0.9894;MQ=57.45;MQ0=0;MQRankSum=-0.319;QD=17.67;ReadPosRankSum=0.154;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:38,57:95:99:1709,0,969
2    98205924    rs74177639    C    G    128.49    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=19;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.9832;MQ=40.86;MQ0=1;MQRankSum=-3.065;QD=6.76;ReadPosRankSum=0.578;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:10,9:19:99:158,0,272
2    98206188    rs1868445    C    G    580    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.76;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.91;MQ0=0;MQRankSum=0.147;QD=14.5;ReadPosRankSum=0.294;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:18,22:40:99:610,0,406
2    98206282    rs28415903    C    T    95.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=0.0;QD=13.61;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258459    GT:AD:DP:GQ:PL    0/1:3,4:7:21.93:125,0,22
2    98273290    rs11547232    C    T    108.12    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=18.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451664    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:138,0,27
2    98273661    rs2290124    A    G    305.58    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.52;DB;DP=25;Dels=0.0;FS=6.825;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.63;QD=12.22;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451664    GT:AD:DP:GQ:PL    0/1:11,14:25:99:336,0,358
2    98274527    rs1042705    G    C    1157.97    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=85;Dels=0.0;FS=3.504;HRun=4;HaplotypeScore=3.5556;MQ=59.46;MQ0=0;MQRankSum=-0.27;QD=13.62;ReadPosRankSum=-1.065;SNPEFF_AMINO_ACID_CHANGE=V268;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_98274406_98274580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289228    GT:AD:DP:GQ:PL    0/1:41,44:85:99:1188,0,1199
2    98276014    rs66578546    CCCTCACCTGCCCTGACCAGAA    C    516.43    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=277.2221;IndelType=D;MQ=55.38;MQ0=0;MQRankSum=-1.67;QD=30.38;ReadPosRankSum=1.092;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000460427    GT:AD:DP:GQ:PL    0/1:12,5:17:99:555,0,1152
2    98374003    rs10169155    T    G    124.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465767    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
2    98375722    rs2305142    A    G    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465767    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
2    98376989    rs3214760    TA    T    703.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=5;HaplotypeScore=66.28;IndelType=D;MQ=60.13;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:1,22:23:66.19:745,66,0
2    98389086    rs12712117    C    T    257.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
2    98392302    rs17489259    G    A    430.09    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.897;DB;DP=24;Dels=0.0;FS=4.216;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.753;QD=17.92;ReadPosRankSum=1.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    0/1:11,13:24:99:460,0,254
2    98413063    rs2293679    G    T    165.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
2    98418696    rs7595039    T    C    114.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:147,12,0
2    98418812    rs66479917    CA    C    1443.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=3;HaplotypeScore=104.51;IndelType=D;MQ=60.27;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1486,120,0
2    98422296    rs1960329    T    C    247.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
2    98435246    rs78683450    T    C    918.58    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.497;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.01;QD=17.67;ReadPosRankSum=1.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    0/1:20,32:52:99:949,0,629
2    98443694    rs13010004    C    T    416.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,13:14:36.11:450,36,0
2    98449748    .    G    C    312    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=17.33;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    0/1:8,10:18:99:342,0,267
2    98449796    rs6721250    C    T    1286.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,38:38:96.30:1319,96,0
2    98451036    rs34454073    TA    T    177.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737;DB;DP=15;FS=0.0;HRun=14;HaplotypeScore=60.1981;IndelType=D;MQ=58.36;MQ0=0;MQRankSum=1.47;QD=11.82;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:2,12:15:10.85:219,11,0
2    98460441    rs66477711    TAG    T    209.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=21.1336;IndelType=D;MQ=61.78;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:252,18,0
2    98460742    rs12712162    G    A    1612.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=59.5;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1646,126,0
2    98460855    rs6543161    G    A    206.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:239,18,0
2    98475979    rs6707750    C    T    845.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:879,66,0
2    98525107    rs1317178    T    C    1169.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,36:36:90.27:1203,90,0
2    98544058    rs6707719    T    C    249.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:282,24,0
2    98611994    rs2279824    G    T    88.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.21;SNPEFF_AMINO_ACID_CHANGE=G44;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_98611939_98612354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM131;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000186436    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
2    98709684    rs298917    T    C    994.65    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.363;DB;DP=56;Dels=0.0;FS=2.503;HRun=0;HaplotypeScore=0.9958;MQ=59.17;MQ0=0;MQRankSum=-0.996;QD=17.76;ReadPosRankSum=-0.619;SNPEFF_AMINO_ACID_CHANGE=H43;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_98709524_98709751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435344    GT:AD:DP:GQ:PL    0/1:19,37:56:99:1025,0,528
2    98811075    rs7579916    A    G    680.98    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.895;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8321;MQ=58.37;MQ0=0;MQRankSum=-0.819;QD=15.84;ReadPosRankSum=-0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435344    GT:AD:DP:GQ:PL    0/1:19,24:43:99:711,0,637
2    98828389    rs62154945    G    A    901.56    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=4.166;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.292;QD=17.34;ReadPosRankSum=-1.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435344    GT:AD:DP:GQ:PL    0/1:20,32:52:99:932,0,484
2    98833445    rs67163987    A    ACCCC    502.28    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=4.104;DB;DP=31;FS=1.564;HRun=3;HaplotypeScore=145.041;IndelType=I;MQ=56.96;MQ0=0;MQRankSum=-0.399;QD=16.2;ReadPosRankSum=-1.946;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422503    GT:AD:DP:GQ:PL    0/1:24,7:31:99:541,0,1088
2    98833594    rs10172087    C    T    32.46    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.64;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422503    GT:AD:DP:GQ:PL    0/1:5,2:7:62.45:62,0,167
2    98834550    rs62156669    G    A    441.20    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.489;QD=16.97;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422503    GT:AD:DP:GQ:PL    0/1:12,14:26:99:471,0,389
2    98844575    rs7606220    A    G    138.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.766;QD=9.27;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477737    GT:AD:DP:GQ:PL    0/1:9,6:15:99:169,0,328
2    98844674    rs7601049    C    G    646.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;MQRankSum=0.082;QD=14.7;ReadPosRankSum=-1.185;SNPEFF_AMINO_ACID_CHANGE=L677V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_98844665_98844795;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000477737    GT:AD:DP:GQ:PL    0/1:22,22:44:99:677,0,746
2    98846405    rs12712252    A    T    112.36    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.293;DB;DP=17;Dels=0.0;FS=3.854;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.22;QD=6.61;ReadPosRankSum=1.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433678    GT:AD:DP:GQ:PL    0/1:10,7:17:99:142,0,349
2    98851631    rs4494805    C    T    63.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477737    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:94,0,31
2    98853364    rs13033263    C    A    120.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=55.66;MQ0=0;MQRankSum=-0.336;QD=10.94;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416277    GT:AD:DP:GQ:PL    0/1:5,5:11:99:150,0,148
2    98853373    rs13013876    G    T    133.84    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=53.95;MQ0=0;MQRankSum=-0.684;QD=16.73;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416277    GT:AD:DP:GQ:PL    0/1:3,5:8:98.56:164,0,99
2    98862097    rs4851121    A    G    555.51    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=35;Dels=0.0;FS=3.323;HRun=0;HaplotypeScore=0.9947;MQ=50.9;MQ0=0;MQRankSum=-2.552;QD=15.87;ReadPosRankSum=1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:13,21:35:99:586,0,434
2    98862106    rs62156717    G    A    533.49    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=34;Dels=0.0;FS=5.305;HRun=2;HaplotypeScore=0.9947;MQ=50.6;MQ0=0;MQRankSum=-2.887;QD=15.69;ReadPosRankSum=1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:14,20:34:99:563,0,465
2    98862150    .    A    AGTATTCT    1360.89    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=1.639;DP=18;FS=0.0;HRun=0;HaplotypeScore=150.4719;IndelType=I;MQ=41.96;MQ0=0;MQRankSum=-3.419;QD=75.6;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:11,7:18:99:1400,0,421
2    98872662    rs113487988    C    CTT    492.87    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.057;DB;DP=65;FS=1.228;HRun=11;HaplotypeScore=283.7935;IndelType=I;MQ=57.45;MQ0=0;MQRankSum=0.195;QD=7.47;ReadPosRankSum=-0.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:45,15:65:99:532,0,691
2    98887116    rs4851955    G    C    2287.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.88;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2320,175,0
2    98887120    rs62157894    G    T    651.64    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.438;DB;DP=74;Dels=0.0;FS=3.587;HRun=3;HaplotypeScore=0.0;MQ=56.81;MQ0=0;MQRankSum=-0.603;QD=8.81;ReadPosRankSum=-1.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:40,34:74:99:682,0,1275
2    98887132    rs62157895    C    G    937.53    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=77;Dels=0.0;FS=3.105;HRun=0;HaplotypeScore=0.0;MQ=56.94;MQ0=0;MQRankSum=-0.133;QD=12.18;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:42,35:77:99:968,0,1325
2    98887355    rs62157896    C    A    417.87    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.49;DB;DP=42;Dels=0.0;FS=4.09;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.614;QD=9.95;ReadPosRankSum=-0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:22,20:42:99:448,0,765
2    98887442    rs80205946    C    T    205.74    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;MQRankSum=0.935;QD=15.83;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:6,7:13:99:236,0,142
2    98906955    rs62155282    T    C    535.53    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=1.492;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.32;MQ0=0;MQRankSum=0.461;QD=15.75;ReadPosRankSum=0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:13,21:34:99:566,0,402
2    98907089    .    GT    G    336.92    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.631;DP=66;FS=2.539;HRun=13;HaplotypeScore=244.5261;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=-0.709;QD=5.1;ReadPosRankSum=1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:40,24:66:99:376,0,563
2    98914559    rs62155296    C    T    169.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.399;DB;DP=24;Dels=0.0;FS=4.586;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.072;QD=7.07;ReadPosRankSum=-0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358269    GT:AD:DP:GQ:PL    0/1:16,8:24:99:200,0,460
2    98928429    rs17428626    C    G    215.61    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.382;QD=19.6;ReadPosRankSum=-1.106;SNPEFF_AMINO_ACID_CHANGE=D1223E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_98928282_98928495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000477737    GT:AD:DP:GQ:PL    0/1:3,8:11:82.27:246,0,82
2    98928494    rs7587534    G    A    183.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_AMINO_ACID_CHANGE=R1245K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_98928282_98928495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000477737    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:217,18,0
2    98928929    rs1466944    A    G    403.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VWA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490947    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:436,33,0
2    98948224    rs13427344    C    A    1437.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092675.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454230    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1471,111,0
2    98949483    rs7571110    T    C    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092675.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454230    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
2    98986510    rs6727412    T    C    448.09    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.842;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.841;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=13.58;ReadPosRankSum=-0.855;SNPEFF_AMINO_ACID_CHANGE=D24;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_98986400_98986539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272602    GT:AD:DP:GQ:PL    0/1:19,14:33:99:478,0,546
2    98994414    rs937725    T    C    358.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272602    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:391,30,0
2    99149946    rs2278211    G    A    1296.83    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=3.037;DB;DP=81;Dels=0.0;FS=4.7;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-1.27;QD=16.01;ReadPosRankSum=-1.913;SNPEFF_AMINO_ACID_CHANGE=T86;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99149840_99149958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000074304    GT:AD:DP:GQ:PL    0/1:31,50:81:99:1327,0,942
2    99154229    rs2278208    C    T    432.40    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=31;Dels=0.0;FS=5.238;HRun=0;HaplotypeScore=1.7333;MQ=59.25;MQ0=0;MQRankSum=-0.879;QD=13.95;ReadPosRankSum=1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000074304    GT:AD:DP:GQ:PL    0/1:14,17:31:99:462,0,351
2    99160508    rs3217304    GCA    G    408    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=2.351;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=142.8624;IndelType=D;MQ=59.4;MQ0=0;MQRankSum=-0.784;QD=13.16;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000074304    GT:AD:DP:GQ:PL    0/1:16,15:31:99:447,0,230
2    99163261    rs2278207    T    A    250.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.353;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.115;QD=12.53;ReadPosRankSum=-0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000074304    GT:AD:DP:GQ:PL    0/1:12,8:20:99:281,0,355
2    99168953    rs1181562    T    C    114.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000074304    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:147,12,0
2    99172244    rs2278206    A    G    716.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.248;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.663;MQ=58.66;MQ0=0;MQRankSum=-0.43;QD=13.79;ReadPosRankSum=-0.302;SNPEFF_AMINO_ACID_CHANGE=T599A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99172016_99172271;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409851    GT:AD:DP:GQ:PL    0/1:26,26:52:99:747,0,831
2    99193496    rs2230388    C    T    561.51    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.941;DB;DP=46;Dels=0.0;FS=10.185;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=-0.529;QD=12.21;ReadPosRankSum=-1.301;SNPEFF_AMINO_ACID_CHANGE=S226;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99193452_99193606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409463    GT:AD:DP:GQ:PL    0/1:25,21:46:99:592,0,699
2    99204186    rs72382214    T    TA    344.54    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.217;DB;DP=35;FS=0.0;HRun=8;HaplotypeScore=80.3076;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.857;QD=9.84;ReadPosRankSum=0.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409851    GT:AD:DP:GQ:PL    0/1:21,14:35:99:384,0,445
2    99220707    rs4851144    T    C    237.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8947;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=13.19;ReadPosRankSum=0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328709    GT:AD:DP:GQ:PL    0/1:10,8:18:99:267,0,278
2    99226021    rs3203856    C    T    514.89    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.628;QD=19.07;ReadPosRankSum=0.828;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_99225042_99226502;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409975    GT:AD:DP:GQ:PL    0/1:10,17:27:99:545,0,337
2    99226173    rs1062847    T    A    1808.36    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=5.097;DB;DP=157;Dels=0.0;FS=5.002;HRun=3;HaplotypeScore=1.8154;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=11.45;ReadPosRankSum=0.494;SNPEFF_AMINO_ACID_CHANGE=M1K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_2_99226106_99226502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC50;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000409347    GT:AD:DP:GQ:PL    0/1:87,70:157:99:1838,0,2756
2    99234586    rs72320300    A    AT    70.74    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;FS=0.0;HRun=15;HaplotypeScore=30.8262;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393487    GT:AD:DP:GQ:PL    0/1:2,5:7:0.03:108,0,0
2    99272802    rs11679648    G    A    3228.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.616;DB;DP=101;Dels=0.0;FS=2.834;HRun=0;HaplotypeScore=2.7298;MQ=58.85;MQ0=0;MQRankSum=1.143;QD=31.96;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264968    GT:AD:DP:GQ:PL    1/1:2,99:101:99:3261,199,0
2    99614566    rs143944517    G    A    313.67    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.779;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.575;QD=12.55;ReadPosRankSum=-1.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539964    GT:AD:DP:GQ:PL    0/1:14,11:25:99:344,0,458
2    99636701    rs190679885    A    T    110.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=8.49;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355053    GT:AD:DP:GQ:PL    0/1:6,7:13:99:140,0,214
2    99687970    rs193021959    C    T    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.98;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542655    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,112
2    99688387    rs149619654    G    C    667.19    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.455;DB;DP=33;Dels=0.0;FS=2.945;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.571;QD=20.22;ReadPosRankSum=-0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355053    GT:AD:DP:GQ:PL    0/1:13,20:33:99:697,0,451
2    99689562    .    TA    T    305.16    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=4.48;DP=35;FS=3.174;HRun=7;HaplotypeScore=83.4618;IndelType=D;MQ=61.23;MQ0=0;MQRankSum=-0.299;QD=8.72;ReadPosRankSum=-1.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355053    GT:AD:DP:GQ:PL    0/1:21,14:35:99:344,0,440
2    99695036    rs181690863    T    C    201.12    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=13.41;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355053    GT:AD:DP:GQ:PL    0/1:5,9:15:99:231,0,171
2    99725138    rs6542863    C    T    169.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471174    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
2    99725223    rs6542864    A    G    338.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=30.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471174    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:372,30,0
2    99725479    rs11396964    A    AT    1751.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=1;HaplotypeScore=99.9087;IndelType=I;MQ=59.81;MQ0=0;QD=41.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471174    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1794,120,0
2    99725575    rs6733285    T    C    146.83    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=-0.736;QD=24.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471174    GT:AD:DP:GQ:PL    0/1:1,5:6:21.27:177,0,21
2    99726043    rs6733624    A    G    342.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355053    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:375,27,0
2    99766927    rs75507898    C    CT    91.04    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=27;FS=2.077;HRun=15;HaplotypeScore=176.7657;IndelType=I;MQ=56.44;MQ0=0;MQRankSum=-0.048;QD=3.37;ReadPosRankSum=-1.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496794    GT:AD:DP:GQ:PL    0/1:14,7:27:66.57:130,0,67
2    99767073    rs139891421    G    A    738.73    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.514;DB;DP=51;Dels=0.0;FS=2.463;HRun=1;HaplotypeScore=0.9734;MQ=59.55;MQ0=0;MQRankSum=0.254;QD=14.48;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=D52N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99766946_99767950;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302513    GT:AD:DP:GQ:PL    0/1:25,26:51:99:769,0,789
2    99778985    rs2632277    T    C    863.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.539;DB;DP=54;Dels=0.0;FS=7.811;HRun=1;HaplotypeScore=1.5362;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=15.99;ReadPosRankSum=1.005;SNPEFF_AMINO_ACID_CHANGE=L189;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99778420_99779611;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340066    GT:AD:DP:GQ:PL    0/1:27,27:54:99:894,0,786
2    99779131    rs2516835    T    C    260.25    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=28;Dels=0.0;FS=1.619;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.168;QD=9.29;ReadPosRankSum=0.599;SNPEFF_AMINO_ACID_CHANGE=A237;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99778420_99779611;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340066    GT:AD:DP:GQ:PL    0/1:18,10:28:99:290,0,488
2    99802820    rs6757661    A    G    270.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308644    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:304,24,0
2    99804642    rs10865030    T    C    457.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_AMINO_ACID_CHANGE=T18;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99804640_99804720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512183    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:490,39,0
2    99811894    rs7605843    C    T    731.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409145    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:765,57,0
2    99812070    rs1044575    G    A    6109.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=A130T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99812036_99814089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000512183    GT:AD:DP:GQ:PL    1/1:0,179:179:99:6109,448,0
2    99812108    rs7572157    T    C    2050.69    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.665;DB;DP=156;Dels=0.0;FS=4.091;HRun=1;HaplotypeScore=0.9332;MQ=59.09;MQ0=0;MQRankSum=2.777;QD=13.06;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=T142;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99812036_99814089;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512183    GT:AD:DP:GQ:PL    0/1:70,86:156:99:2081,0,2114
2    99938301    rs13017871    C    T    141.37    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.41;MQ0=1;MQRankSum=-1.668;QD=12.85;ReadPosRankSum=-1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409705    GT:AD:DP:GQ:PL    0/1:5,6:11:99:171,0,166
2    99943871    rs115994977    G    C    79.98    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=10.0;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424491    GT:AD:DP:GQ:PL    0/1:3,5:8:99:110,0,104
2    99944168    rs117462941    C    T    332.69    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.019;DB;DP=38;Dels=0.0;FS=1.533;HRun=0;HaplotypeScore=0.9665;MQ=58.78;MQ0=0;MQRankSum=0.525;QD=8.76;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424491    GT:AD:DP:GQ:PL    0/1:23,15:38:99:363,0,580
2    99976564    rs3828162    A    G    365.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
2    99976813    rs41280587    G    A    332.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.736;DB;DP=20;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=1.9748;MQ=59.06;MQ0=0;MQRankSum=0.501;QD=16.63;ReadPosRankSum=-0.424;SNPEFF_AMINO_ACID_CHANGE=K50;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99976699_99976824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:8,12:20:99:363,0,273
2    99977196    rs150269958    G    A    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
2    99978048    rs12233086    G    A    975.07    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.712;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9988;MQ=60.0;MQ0=0;MQRankSum=-0.757;QD=11.47;ReadPosRankSum=-0.649;SNPEFF_AMINO_ACID_CHANGE=V228;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99977611_99978283;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:48,37:85:99:1005,0,1419
2    99980811    rs117138860    G    T    2423.73    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.45;DB;DP=147;Dels=0.0;FS=1.401;HRun=0;HaplotypeScore=1.7356;MQ=60.0;MQ0=0;MQRankSum=-1.258;QD=16.49;ReadPosRankSum=-2.984;SNPEFF_AMINO_ACID_CHANGE=G405;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99980734_99980884;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:59,87:147:99:2454,0,1978
2    99992822    rs7558074    A    C    295.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_AMINO_ACID_CHANGE=K522T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99992810_99993099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
2    99993160    rs78875872    T    C    248.62    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.436;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.357;QD=7.77;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:21,11:32:99:279,0,706
2    99995458    .    AT    A    79.38    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DP=24;FS=0.0;HRun=15;HaplotypeScore=141.1529;IndelType=D;MQ=55.1;MQ0=0;MQRankSum=-0.722;QD=3.31;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:13,8:24:99:118,0,210
2    99995804    rs1376443    T    C    974.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=D658;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_99995781_99995891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    1/1:0,28:28:78.23:1007,78,0
2    99998561    rs2290256    C    T    762.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:796,60,0
2    100006061    rs3842563    G    GAGTA    813.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=32.4989;IndelType=I;MQ=48.43;MQ0=0;QD=73.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    1/1:2,9:11:33.11:855,33,0
2    100006620    rs10187843    G    T    1407.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1441,114,0
2    100006890    rs35228031    G    GT    501.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.17;DB;DP=49;FS=5.228;HRun=14;HaplotypeScore=307.1104;IndelType=I;MQ=57.48;MQ0=0;MQRankSum=1.17;QD=10.23;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    1/1:23,25:49:22.89:543,23,0
2    100010685    rs2242036    A    G    1884.77    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=3.261;DB;DP=135;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7896;MQ=59.83;MQ0=0;MQRankSum=0.148;QD=13.96;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470868    GT:AD:DP:GQ:PL    0/1:68,67:135:99:1915,0,1886
2    100010810    rs3197957    A    G    1166.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.328;DB;DP=82;Dels=0.0;FS=2.167;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.122;QD=14.22;ReadPosRankSum=-1.122;SNPEFF_AMINO_ACID_CHANGE=T987;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100010730_100010861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:41,41:82:99:1196,0,1340
2    100019059    rs28382973    AGAC    A    611.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.106;DB;DP=30;FS=1.862;HRun=0;HaplotypeScore=119.1272;IndelType=D;MQ=58.4;MQ0=0;MQRankSum=0.124;QD=20.39;ReadPosRankSum=-1.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:15,15:30:99:651,0,909
2    100019496    rs2305354    A    G    1820.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=I1079;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100019352_100019569;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393445    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1854,135,0
2    100020742    rs6711073    G    A    40.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.09;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:2,3:5:61.92:70,0,62
2    100021184    rs2290261    A    G    136.48    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=12.41;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289371    GT:AD:DP:GQ:PL    0/1:6,5:11:99:166,0,210
2    100022270    rs1053544    G    A    30.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.07;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472000    GT:AD:DP:GQ:PL    0/1:4,2:6:60.39:60,0,130
2    100022617    rs13394927    G    A    193.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.663;QD=13.81;ReadPosRankSum=-0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    0/1:7,7:14:99:223,0,239
2    100022772    rs717454    T    C    754.49    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=64;Dels=0.0;FS=1.002;HRun=0;HaplotypeScore=3.2927;MQ=60.0;MQ0=0;MQRankSum=-0.436;QD=11.79;ReadPosRankSum=-0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    0/1:36,28:64:99:784,0,1097
2    100024771    rs28382959    C    T    35.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.06;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    0/1:3,2:5:65.29:65,0,108
2    100027104    rs142397096    C    T    576.39    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=16.01;ReadPosRankSum=1.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    0/1:15,21:36:99:606,0,482
2    100029106    rs2242037    T    C    298.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:332,24,0
2    100029133    rs80261526    G    C    216.48    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.099;QD=14.43;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    0/1:8,7:15:99:246,0,286
2    100035441    .    TCA    T    965.77    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=3.88;DP=50;FS=1.628;HRun=0;HaplotypeScore=179.403;IndelType=D;MQ=58.13;MQ0=0;MQRankSum=-0.134;QD=19.32;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    0/1:24,26:50:99:1005,0,1093
2    100055506    rs3087386    A    G    1200.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.32;MQ0=0;QD=35.31;SNPEFF_AMINO_ACID_CHANGE=F257S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100055063_100055772;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1234,96,0
2    100078702    .    T    C    51.64    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    100081317    rs28369944    T    C    1063.14    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=59;Dels=0.0;FS=2.888;HRun=0;HaplotypeScore=1.8666;MQ=58.82;MQ0=0;MQRankSum=-0.172;QD=18.02;ReadPosRankSum=0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    0/1:22,36:59:99:1093,0,745
2    100081323    rs28369943    C    T    2284.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.917;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=58.31;MQ0=0;MQRankSum=0.306;QD=33.11;ReadPosRankSum=0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    1/1:1,68:69:99:2318,135,0
2    100081561    rs28369942    A    AAAGTC    1418.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=66.424;IndelType=I;MQ=53.82;MQ0=0;QD=78.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258428    GT:AD:DP:GQ:PL    1/1:2,15:18:51.17:1460,51,0
2    100171382    rs11893480    G    A    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317233    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    100210334    .    CG    C    214.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DP=16;FS=0.0;HRun=2;HaplotypeScore=133.0689;IndelType=D;MQ=43.69;MQ0=0;MQRankSum=-2.858;QD=13.4;ReadPosRankSum=0.212;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_100209657_100210751;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000317233    GT:AD:DP:GQ:PL    0/1:8,8:16:99:253,0,240
2    100210337    .    CTGAGG    C    471.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DP=16;FS=0.0;HRun=0;HaplotypeScore=138.3523;IndelType=D;MQ=43.69;MQ0=0;MQRankSum=-2.858;QD=29.46;ReadPosRankSum=0.212;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_100209657_100210751;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000317233    GT:AD:DP:GQ:PL    0/1:8,8:16:99:510,0,627
2    100288931    rs4851222    G    A    1570.20    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=5.49;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.77;MQ0=0;MQRankSum=0.13;QD=15.39;ReadPosRankSum=0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317233    GT:AD:DP:GQ:PL    0/1:47,55:102:99:1600,0,1207
2    100343557    rs4851223    C    T    1003    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=S358N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100343539_100343590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317233    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1036,75,0
2    100454072    rs5832886    C    CT    489.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=23.9853;IndelType=I;MQ=60.9;MQ0=0;QD=40.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317233    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:532,36,0
2    100906570    .    A    AAAAT    363.07    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=0;HaplotypeScore=25.132;IndelType=I;MQ=61.34;MQ0=0;QD=51.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:1,3:7:21.07:405,21,0
2    100915629    rs4851286    T    C    517.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:550,42,0
2    100915772    rs4851287    A    G    1074.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=L183P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100915688_100915781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409647    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1108,84,0
2    100916051    rs2033749    T    C    477.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:510,39,0
2    100916306    rs2033748    A    G    2032.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=59.25;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=F137;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100916179_100916380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409647    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2066,160,0
2    100916315    rs11123823    A    G    1983.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=G134;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100916179_100916380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409647    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2016,153,0
2    100916481    rs80032106    A    AGG    242.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=8;HaplotypeScore=35.0938;IndelType=I;MQ=60.0;MQ0=0;QD=24.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:4,6:10:18.06:284,18,0
2    100917109    rs13006224    C    T    2003.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_AMINO_ACID_CHANGE=S111;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100917106_100917249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409647    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2037,150,0
2    100925340    rs13001423    A    G    116.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
2    100925399    rs11689439    T    C    470.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:503,39,0
2    100925439    rs11693424    G    A    774.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=38.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:808,60,0
2    100925803    rs10195793    A    G    380.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:414,30,0
2    100938328    rs74177695    T    C    72.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.1;SNPEFF_AMINO_ACID_CHANGE=E76;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_100937877_100939195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393437    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:104,9,0
2    101009600    rs1530030    G    A    661.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409046    GT:AD:DP:GQ:PL    1/1:0,20:20:57.12:695,57,0
2    101010082    rs3748930    G    C    3899.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=T232;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101008327_101010244;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264249    GT:AD:DP:GQ:PL    1/1:0,128:128:99:3899,307,0
2    101011877    rs2241810    T    C    375.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409046    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:408,30,0
2    101014247    rs4149517    C    A    213.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409046    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
2    101014363    rs2241809    C    T    1020.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.25;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409046    GT:AD:DP:GQ:PL    1/1:0,31:31:81.21:1053,81,0
2    101022886    rs4149512    C    T    1290.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435960    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1324,102,0
2    101031561    rs3828193    G    T    452.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=N18K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101031503_101031573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448989    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:486,39,0
2    101126124    rs1829479    T    A    528.71    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.149;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.183;QD=13.56;ReadPosRankSum=-0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC068538.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376856    GT:AD:DP:GQ:PL    0/1:20,19:39:99:559,0,687
2    101521173    rs5832942    AT    A    329.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DB;DP=36;FS=6.69;HRun=17;HaplotypeScore=202.2067;IndelType=D;MQ=56.53;MQ0=1;MQRankSum=-0.867;QD=8.91;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    1/1:9,23:36:53.35:372,53,0
2    101541798    rs356651    C    T    343.40    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.856;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8318;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=13.74;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    0/1:12,13:25:99:373,0,367
2    101564628    rs10207725    A    G    724.62    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.194;DB;DP=51;Dels=0.0;FS=1.567;HRun=0;HaplotypeScore=1.6828;MQ=60.0;MQ0=0;MQRankSum=-1.155;QD=14.21;ReadPosRankSum=-0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    0/1:24,27:51:99:755,0,768
2    101581246    rs7581886    C    T    315.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486017    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:348,27,0
2    101587455    rs1562313    C    T    526.93    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=43;Dels=0.0;FS=7.314;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.379;QD=12.25;ReadPosRankSum=-1.111;SNPEFF_AMINO_ACID_CHANGE=Y353;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101587452_101587536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    0/1:23,20:43:99:557,0,675
2    101591304    rs2305160    A    G    536.82    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.621;DB;DP=42;Dels=0.0;FS=4.417;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.326;QD=12.78;ReadPosRankSum=0.509;SNPEFF_AMINO_ACID_CHANGE=T394A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101591265_101591406;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    0/1:20,22:42:99:567,0,642
2    101591443    rs2305159    A    C    162.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.116;DB;DP=20;Dels=0.0;FS=8.316;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.504;QD=8.15;ReadPosRankSum=-0.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    0/1:12,8:20:99:193,0,419
2    101594454    rs9679638    T    C    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
2    101598677    rs2278727    C    T    169.87    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.033;DB;DP=30;Dels=0.0;FS=5.721;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.258;QD=5.66;ReadPosRankSum=-1.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    0/1:19,11:30:99:200,0,658
2    101606511    rs6726870    A    G    76.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335681    GT:AD:DP:GQ:PL    0/1:2,3:5:64.76:107,0,65
2    101609827    rs9223    C    T    733.89    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=63;Dels=0.0;FS=2.095;HRun=0;HaplotypeScore=3.9696;MQ=59.27;MQ0=0;MQRankSum=-0.392;QD=11.65;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=R149C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101609809_101609989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450763    GT:AD:DP:GQ:PL    0/1:32,31:63:99:764,0,933
2    101619283    rs2278724    C    G    852.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=58.61;MQ0=0;QD=31.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    1/1:0,26:27:69.20:885,69,0
2    101619321    rs2278723    T    C    468.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.05;DB;DP=20;Dels=0.0;FS=6.767;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=1.55;QD=23.41;ReadPosRankSum=-0.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    0/1:5,15:20:90.27:498,0,90
2    101620990    rs2278721    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    101622728    rs10934    C    T    255.20    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=17;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=15.01;ReadPosRankSum=-1.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409000    GT:AD:DP:GQ:PL    0/1:7,10:17:99:285,0,196
2    101624471    rs746924    T    C    1099.82    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.594;DB;DP=108;Dels=0.0;FS=5.209;HRun=3;HaplotypeScore=3.7786;MQ=59.79;MQ0=0;MQRankSum=0.539;QD=10.18;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=R1079G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101624079_101624735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    0/1:61,47:108:99:1130,0,2007
2    101635538    rs13007048    C    T    355.45    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.939;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=15.45;ReadPosRankSum=1.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409038    GT:AD:DP:GQ:PL    0/1:11,12:23:99:385,0,279
2    101638888    rs3739014    A    G    353.39    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.557;DB;DP=39;Dels=0.0;FS=1.45;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.437;QD=9.06;ReadPosRankSum=1.558;SNPEFF_AMINO_ACID_CHANGE=D857;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101638743_101638983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    0/1:24,14:39:99:383,0,831
2    101644855    rs11683877    G    A    357.12    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.039;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=59.42;MQ0=0;MQRankSum=1.713;QD=8.93;ReadPosRankSum=1.303;SNPEFF_AMINO_ACID_CHANGE=P739;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101644765_101644894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    0/1:26,14:40:99:387,0,831
2    101646359    rs12472882    G    C    266.94    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=24.27;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    0/1:3,8:11:92.11:297,0,92
2    101652732    rs4850957    C    T    703.24    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.253;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.2;MQ0=0;MQRankSum=-1.495;QD=12.12;ReadPosRankSum=-1.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    0/1:33,24:58:99:733,0,1100
2    101652733    rs6705837    G    A    1044.27    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=59.19;MQ0=0;MQRankSum=0.137;QD=18.32;ReadPosRankSum=1.841;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    0/1:25,32:57:99:1074,0,783
2    101652797    rs6543005    T    C    463.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:497,42,0
2    101652916    rs6706075    G    A    82.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    101656726    rs2289953    T    C    1063.82    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.045;DB;DP=81;Dels=0.0;FS=0.88;HRun=0;HaplotypeScore=2.792;MQ=59.72;MQ0=0;MQRankSum=-0.809;QD=13.13;ReadPosRankSum=-0.26;SNPEFF_AMINO_ACID_CHANGE=T317A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101656640_101656847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376840    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1094,0,1253
2    101675808    rs7572457    A    G    518.53    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.35;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=59.39;MQ0=0;MQRankSum=1.021;QD=13.65;ReadPosRankSum=1.874;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487392    GT:AD:DP:GQ:PL    0/1:21,17:38:99:549,0,673
2    101869588    rs2272320    G    T    84.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=53.36;MQ0=0;MQRankSum=0.322;QD=7.64;ReadPosRankSum=-0.322;SNPEFF_AMINO_ACID_CHANGE=P54;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101869264_101869940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289382    GT:AD:DP:GQ:PL    0/1:5,5:11:76.22:114,0,76
2    101874442    rs6757365    C    T    238.49    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.302;DB;DP=33;Dels=0.0;FS=1.573;HRun=0;HaplotypeScore=4.523;MQ=60.0;MQ0=0;MQRankSum=-0.307;QD=7.23;ReadPosRankSum=-0.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289382    GT:AD:DP:GQ:PL    0/1:20,13:33:99:268,0,668
2    101881549    rs3768995    A    T    57.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.62;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289382    GT:AD:DP:GQ:PL    0/1:3,3:6:87.70:88,0,104
2    101889306    rs750783    A    G    78    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.354;QD=5.57;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289382    GT:AD:DP:GQ:PL    0/1:10,4:14:99:108,0,363
2    101898412    rs13151    G    C    1315.80    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.291;DB;DP=81;Dels=0.0;FS=5.833;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.262;QD=16.24;ReadPosRankSum=-0.015;SNPEFF_AMINO_ACID_CHANGE=D356E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_101898321_101898519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNF149;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295317    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1346,0,1089
2    101911385    rs3828194    A    G    837.07    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.195;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.731;QD=15.5;ReadPosRankSum=0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNF149;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295317    GT:AD:DP:GQ:PL    0/1:22,32:54:99:867,0,663
2    101967346    rs6543032    C    T    649.51    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.462;DB;DP=48;Dels=0.0;FS=5.684;HRun=4;HaplotypeScore=0.7887;MQ=59.52;MQ0=0;MQRankSum=0.096;QD=13.53;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540519    GT:AD:DP:GQ:PL    0/1:23,25:48:99:680,0,680
2    102000210    rs11694978    G    A    500.28    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.078;DB;DP=31;Dels=0.0;FS=1.987;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.946;QD=16.14;ReadPosRankSum=-2.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324768    GT:AD:DP:GQ:PL    0/1:11,20:31:99:530,0,316
2    102018878    rs11123876    G    A    106.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=10.7;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:5,5:10:99:137,0,163
2    102029273    rs11689348    T    C    113.67    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.24;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:2,5:7:65.46:144,0,65
2    102029548    rs1554070    G    A    455.73    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=43;Dels=0.0;FS=4.336;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.292;QD=10.6;ReadPosRankSum=1.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:25,18:43:99:486,0,768
2    102029646    rs12620464    T    C    325.20    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.587;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=17.12;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:6,13:19:99:355,0,183
2    102031176    rs4851434    A    G    281.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
2    102031489    rs4851435    C    G    422.40    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=16.25;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:12,14:26:99:452,0,376
2    102033851    rs11397297    T    TA    511.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=82.9837;IndelType=I;MQ=57.0;MQ0=0;QD=42.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484091    GT:AD:DP:GQ:PL    1/1:1,11:12:36.11:554,36,0
2    102033867    rs6761866    T    C    531.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.61;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484091    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:564,42,0
2    102035192    rs6709913    C    T    224.20    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.032;QD=11.8;ReadPosRankSum=1.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484091    GT:AD:DP:GQ:PL    0/1:11,8:19:99:254,0,398
2    102038849    rs4851436    T    A    4498.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=36.28;SNPEFF_AMINO_ACID_CHANGE=Q166L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_102038824_102038934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4498,325,0
2    102038927    .    T    A    1057.88    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DP=70;Dels=0.0;FS=18.223;HRun=1;HaplotypeScore=0.9989;MQ=59.4;MQ0=0;MQRankSum=-0.153;QD=15.11;ReadPosRankSum=0.871;SNPEFF_AMINO_ACID_CHANGE=D140V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_102038824_102038934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1088,0,1113
2    102039131    rs6543043    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
2    102083183    rs4851455    T    C    674.90    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=41;Dels=0.0;FS=3.491;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.216;QD=16.46;ReadPosRankSum=0.494;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:16,25:41:99:705,0,562
2    102083393    rs11680478    T    C    195.28    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.239;DB;DP=23;Dels=0.0;FS=2.126;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.99;QD=8.49;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:15,8:23:99:225,0,475
2    102091075    rs6742474    G    A    237.16    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.334;DB;DP=28;Dels=0.0;FS=1.775;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=8.47;ReadPosRankSum=0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428343    GT:AD:DP:GQ:PL    0/1:19,9:28:99:267,0,483
2    102091220    rs4851457    C    T    76.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.71;ReadPosRankSum=-1.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376826    GT:AD:DP:GQ:PL    0/1:2,4:6:56.28:106,0,56
2    102314387    .    C    G    65.84    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.065;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.25;MQ0=0;MQRankSum=-0.854;QD=3.47;ReadPosRankSum=-0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427603    GT:AD:DP:GQ:PL    0/1:11,7:19:95.83:96,0,394
2    102314437    rs13430711    T    C    619.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.64;MQ0=0;MQRankSum=1.97;QD=14.74;ReadPosRankSum=-0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427603    GT:AD:DP:GQ:PL    0/1:18,24:42:99:649,0,481
2    102314648    .    G    GGCAGCCT    2059.74    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.932;DP=39;FS=0.0;HRun=0;HaplotypeScore=257.8502;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=-4.863;QD=52.81;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302217    GT:AD:DP:GQ:PL    0/1:27,11:39:99:2099,0,908
2    102315057    rs1567385    A    G    1176.72    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.433;DB;DP=92;Dels=0.0;FS=4.125;HRun=5;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.808;QD=12.79;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302217    GT:AD:DP:GQ:PL    0/1:44,48:92:99:1207,0,1335
2    102459268    rs17801985    A    G    34.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.95;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302217    GT:AD:DP:GQ:PL    0/1:2,3:5:64.74:65,0,70
2    102483883    rs17745869    T    G    534.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=14.84;ReadPosRankSum=1.693;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418101    GT:AD:DP:GQ:PL    0/1:18,18:36:99:564,0,649
2    102501891    rs57584884    A    G    153.14    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.056;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=8.06;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302217    GT:AD:DP:GQ:PL    0/1:12,7:19:99:183,0,402
2    102640871    rs3218974    A    G    211.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.865;QD=15.11;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457817    GT:AD:DP:GQ:PL    0/1:6,8:14:99:241,0,202
2    102774054    rs2287047    G    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233946    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
2    102781649    rs2228139    C    G    434.13    HaplotypeScoreFilter13    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.007;DB;DP=50;Dels=0.0;FS=6.236;HRun=1;HaplotypeScore=21.7594;MQ=52.13;MQ0=0;MQRankSum=-0.323;QD=8.68;ReadPosRankSum=3.02;SNPEFF_AMINO_ACID_CHANGE=A124G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_102781575_102781764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233946    GT:AD:DP:GQ:PL    0/1:19,14:50:99:464,0,579
2    102781911    rs3917289    G    T    110.53    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.731;QD=22.11;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442590    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:141,0,26
2    102785158    rs55639750    GT    G    311.75    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.302;DB;DP=51;FS=3.233;HRun=12;HaplotypeScore=170.9904;IndelType=D;MQ=59.74;MQ0=0;MQRankSum=-0.081;QD=6.11;ReadPosRankSum=0.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430171    GT:AD:DP:GQ:PL    0/1:30,21:51:99:351,0,457
2    102788409    rs2041747    G    A    1010.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233946    GT:AD:DP:GQ:PL    1/1:0,31:31:81.23:1043,81,0
2    102804041    rs2241131    C    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264257    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    102817954    rs2302623    A    T    163.68    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=10.91;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264257    GT:AD:DP:GQ:PL    0/1:7,8:15:99:194,0,226
2    102828817    rs1922291    A    G    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264257    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
2    102851243    rs6742931    C    T    131.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=11.96;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264257    GT:AD:DP:GQ:PL    0/1:5,6:11:99:162,0,164
2    102851837    rs4851561    G    A    72.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264257    GT:AD:DP:GQ:PL    0/1:1,3:4:24.09:103,0,24
2    102959646    rs62152661    A    G    787.82    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=2.671;DB;DP=66;Dels=0.0;FS=13.778;HRun=0;HaplotypeScore=0.8941;MQ=59.3;MQ0=0;MQRankSum=-0.649;QD=11.94;ReadPosRankSum=3.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393393    GT:AD:DP:GQ:PL    0/1:40,26:66:99:818,0,1309
2    102967928    rs4988955    A    G    201.30    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=16.77;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410040    GT:AD:DP:GQ:PL    0/1:5,7:12:99:231,0,173
2    102968007    rs4988956    G    A    591.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.357;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8519;MQ=59.36;MQ0=0;MQRankSum=-0.459;QD=16.44;ReadPosRankSum=0.301;SNPEFF_AMINO_ACID_CHANGE=A433T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_102967996_102968497;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233954    GT:AD:DP:GQ:PL    0/1:18,18:36:99:622,0,601
2    102968075    rs4988957    T    C    518.81    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.131;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;MQRankSum=0.954;QD=12.65;ReadPosRankSum=0.876;SNPEFF_AMINO_ACID_CHANGE=N455;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_102967996_102968497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233954    GT:AD:DP:GQ:PL    0/1:22,19:41:99:549,0,670
2    102968285    rs4988958    T    C    717.30    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.61;MQ0=0;MQRankSum=-0.518;QD=12.16;ReadPosRankSum=0.283;SNPEFF_AMINO_ACID_CHANGE=S525;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_102967996_102968497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233954    GT:AD:DP:GQ:PL    0/1:34,25:59:99:747,0,1014
2    102968356    rs10192157    C    T    804.07    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.458;DB;DP=66;Dels=0.0;FS=4.856;HRun=1;HaplotypeScore=0.734;MQ=59.72;MQ0=0;MQRankSum=0.864;QD=12.18;ReadPosRankSum=0.455;SNPEFF_AMINO_ACID_CHANGE=T549I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_102967996_102968497;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233954    GT:AD:DP:GQ:PL    0/1:36,30:66:99:834,0,1064
2    102968362    rs10206753    T    C    658.98    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=66;Dels=0.0;FS=5.128;HRun=0;HaplotypeScore=1.4679;MQ=59.72;MQ0=0;MQRankSum=2.091;QD=9.98;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=L551S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_102967996_102968497;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233954    GT:AD:DP:GQ:PL    0/1:36,29:66:99:689,0,1064
2    102984624    rs1362348    C    G    776.44    PASS    AB=0.281;AC=1;AF=0.50;AN=2;BaseQRankSum=0.168;DB;DP=32;Dels=0.0;FS=3.099;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=24.26;ReadPosRankSum=0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233957    GT:AD:DP:GQ:PL    0/1:9,23:32:99:806,0,243
2    102984684    rs1558627    G    A    174.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.588;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=14.53;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233957    GT:AD:DP:GQ:PL    0/1:6,6:12:99:204,0,220
2    102992675    rs2270297    T    C    59.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=9.87;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334376    GT:AD:DP:GQ:PL    0/1:3,3:6:89.21:89,0,106
2    103006448    rs6749014    C    T    165.72    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=10.36;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233957    GT:AD:DP:GQ:PL    0/1:10,6:16:99:196,0,355
2    103010912    rs1420096    C    T    108.90    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=19;Dels=0.0;FS=2.735;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=5.44;ReadPosRankSum=-0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233957    GT:AD:DP:GQ:PL    0/1:14,5:19:99:139,0,480
2    103012902    rs1420095    A    G    31.35    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.48;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233957    GT:AD:DP:GQ:PL    0/1:5,2:7:61.34:61,0,190
2    103039584    rs3817465    A    T    92.16    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=6.58;ReadPosRankSum=-0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:9,5:14:99:122,0,318
2    103039686    rs41365546    C    A    654.19    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.896;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.244;QD=16.35;ReadPosRankSum=0.921;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497795    GT:AD:DP:GQ:PL    0/1:19,21:40:99:684,0,625
2    103039929    rs2272128    G    A    130.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=10.87;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:6,6:12:99:160,0,216
2    103040177    rs6543133    A    T    83.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:113,0,28
2    103040247    rs11377261    T    TG    233.54    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=76.8517;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=-2.188;QD=11.68;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:12,8:20:99:273,0,371
2    103040945    rs887972    G    A    485.61    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.97;DB;DP=35;Dels=0.0;FS=3.106;HRun=0;HaplotypeScore=0.9999;MQ=59.34;MQ0=0;MQRankSum=0.48;QD=13.87;ReadPosRankSum=-2.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450855    GT:AD:DP:GQ:PL    0/1:16,19:35:99:516,0,570
2    103057668    rs11465700    G    A    122.48    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.5;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:152,0,25
2    103059613    rs1558651    A    G    1356.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1390,111,0
2    103063369    rs6708413    G    A    530.76    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.288;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.598;QD=18.3;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:12,17:29:99:561,0,397
2    103063489    rs11465722    C    T    1465.74    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.626;DB;DP=136;Dels=0.0;FS=3.36;HRun=0;HaplotypeScore=3.178;MQ=58.98;MQ0=0;MQRankSum=1.201;QD=10.78;ReadPosRankSum=-0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:76,58:136:99:1496,0,2223
2    103068156    rs917998    C    T    340.37    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.434;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.516;QD=10.98;ReadPosRankSum=0.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:20,11:31:99:370,0,715
2    103068787    rs7559479    G    A    239.70    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.29;MQ0=0;MQRankSum=1.381;QD=18.44;ReadPosRankSum=-1.67;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:5,8:13:99:270,0,129
2    103068834    rs7603250    T    A    31.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264260    GT:AD:DP:GQ:PL    0/1:2,2:4:61.20:61,0,66
2    103090575    rs79463214    A    C    206.36    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=12.9;ReadPosRankSum=0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    0/1:9,7:16:99:236,0,310
2    103095404    rs11692304    G    A    340.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.124;DB;DP=35;Dels=0.0;FS=1.422;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.129;QD=9.72;ReadPosRankSum=-0.497;SNPEFF_AMINO_ACID_CHANGE=S121;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_103095298_103095761;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    0/1:20,15:35:99:370,0,546
2    103120232    rs2075188    G    A    840.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,26:27:66.20:873,66,0
2    103120311    rs2075187    G    A    315.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:348,27,0
2    103120356    rs4851015    C    T    130.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
2    103120400    rs4851016    C    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    103121536    rs7605606    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    103125138    rs6751949    G    A    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492154    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
2    103125182    rs6724322    C    T    211.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492154    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
2    103125457    rs6739301    A    G    1515.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=35.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492154    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1548,114,0
2    103125466    rs6742381    T    C    1196.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492154    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1230,108,0
2    103125632    rs4851607    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492154    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    103128866    rs4851609    T    C    221.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:255,21,0
2    103136309    rs1403550    T    C    1516.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7074;MQ=59.49;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1550,117,0
2    103136446    rs1403551    T    G    1454.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1487,114,0
2    103141447    rs2015478    A    G    7440.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DB;DP=230;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8188;MQ=59.62;MQ0=0;MQRankSum=-1.351;QD=32.35;ReadPosRankSum=1.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:1,229:230:99:7440,569,0
2    103141651    rs1024798    G    C    1135.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,35:35:90.23:1169,90,0
2    103149100    rs1014286    G    A    809.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=29.98;SNPEFF_AMINO_ACID_CHANGE=G784S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_103148789_103150431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,27:27:60.20:842,60,0
2    103149162    rs2008159    A    G    865.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:899,69,0
2    103149182    rs2008157    A    G    585.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295269    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:619,48,0
2    103281960    rs6543176    A    G    288.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233969    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
2    103300506    rs6757258    A    G    149.39    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=14.94;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233969    GT:AD:DP:GQ:PL    0/1:3,7:10:97.67:179,0,98
2    103317840    rs2310319    T    C    106.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233969    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:139,12,0
2    103324575    rs17833353    T    C    2242.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.544;DB;DP=71;Dels=0.0;FS=6.084;HRun=0;HaplotypeScore=4.4018;MQ=59.41;MQ0=0;MQRankSum=-1.039;QD=31.58;ReadPosRankSum=0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233969    GT:AD:DP:GQ:PL    1/1:1,69:71:99:2275,137,0
2    103340541    rs6759290    T    C    129.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MFSD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421966    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
2    103343234    rs3796061    G    C    1862.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.9;MQ0=0;QD=32.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MFSD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421966    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1896,147,0
2    103343275    rs68180714    G    GA    496.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;DB;DP=109;FS=4.481;HRun=19;HaplotypeScore=1071.6946;IndelType=I;MQ=48.34;MQ0=0;MQRankSum=0.196;QD=4.56;ReadPosRankSum=-2.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MFSD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421966    GT:AD:DP:GQ:PL    1/1:64,29:109:1.81:535,2,0
2    103431404    rs887987    T    C    1336.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.4;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=W127R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_103431207_103433875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM182;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409528    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1369,108,0
2    105185415    rs7609175    G    A    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC013402.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408727    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    105665520    rs12614222    G    A    118.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.75;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258455    GT:AD:DP:GQ:PL    0/1:2,4:6:43.44:148,0,43
2    105665534    rs12611937    T    C    152.90    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.84;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258455    GT:AD:DP:GQ:PL    0/1:2,5:7:52.24:183,0,52
2    105665808    rs17634737    C    T    420.43    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.932;DB;DP=33;Dels=0.0;FS=1.741;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=1.439;QD=12.74;ReadPosRankSum=-0.747;SNPEFF_AMINO_ACID_CHANGE=D105;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_105665629_105665808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258455    GT:AD:DP:GQ:PL    0/1:19,14:33:99:450,0,535
2    105705507    rs11538198    C    T    845    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.373;DB;DP=57;Dels=0.0;FS=2.325;HRun=1;HaplotypeScore=0.9734;MQ=59.6;MQ0=0;MQRankSum=0.601;QD=14.82;ReadPosRankSum=-1.706;SNPEFF_AMINO_ACID_CHANGE=L185;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_105705442_105705527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258455    GT:AD:DP:GQ:PL    0/1:26,31:57:99:875,0,841
2    105709023    rs6543282    T    C    1417.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=S272;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_105708859_105709027;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258455    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1451,114,0
2    105709145    rs77811260    C    T    140.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=11.74;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258455    GT:AD:DP:GQ:PL    0/1:6,6:12:99:171,0,168
2    105713697    rs15567    A    G    414.73    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.63;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-1.639;QD=12.57;ReadPosRankSum=-0.666;SNPEFF_AMINO_ACID_CHANGE=S338;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_105713613_105713782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258455    GT:AD:DP:GQ:PL    0/1:17,16:33:99:445,0,560
2    105716266    rs9066    A    G    209.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.289;QD=13.98;ReadPosRankSum=1.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472220    GT:AD:DP:GQ:PL    0/1:8,7:15:99:240,0,277
2    105859249    rs35946826    C    T    1634.69    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.677;DB;DP=124;Dels=0.0;FS=3.283;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=-0.332;QD=13.18;ReadPosRankSum=1.661;SNPEFF_AMINO_ACID_CHANGE=L312F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_105858200_105859924;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258456    GT:AD:DP:GQ:PL    0/1:66,58:124:99:1665,0,1996
2    105885961    rs2241797    T    C    164.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=20.62;ReadPosRankSum=-1.589;SNPEFF_AMINO_ACID_CHANGE=H180R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_105885729_105886162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBRAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543724    GT:AD:DP:GQ:PL    0/1:2,6:8:58.34:195,0,58
2    105889349    rs11676273    G    A    663.79    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.389;DB;DP=47;Dels=0.0;FS=6.94;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.732;QD=14.12;ReadPosRankSum=1.261;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_105889312_105889471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBRAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543724    GT:AD:DP:GQ:PL    0/1:21,25:47:99:694,0,604
2    105897261    rs2679833    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258449    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
2    105924017    rs67600221    C    T    1020.68    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=74;Dels=0.0;FS=1.314;HRun=0;HaplotypeScore=4.6109;MQ=55.54;MQ0=0;MQRankSum=1.075;QD=13.79;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258449    GT:AD:DP:GQ:PL    0/1:36,38:74:99:1051,0,959
2    105977761    rs11124029    G    A    577.10    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=59.56;MQ0=0;MQRankSum=-1.195;QD=11.1;ReadPosRankSum=1.454;SNPEFF_AMINO_ACID_CHANGE=P273;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_105977285_105977891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322142    GT:AD:DP:GQ:PL    0/1:30,22:52:99:607,0,829
2    105979730    rs2278502    C    A    167.86    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.331;QD=11.19;ReadPosRankSum=1.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452732    GT:AD:DP:GQ:PL    0/1:8,7:15:99:198,0,275
2    106013216    rs11891016    T    C    1744.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322142    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1777,147,0
2    106013248    rs11884297    C    T    362.61    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.25;MQ0=0;MQRankSum=2.295;QD=9.07;ReadPosRankSum=-0.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322142    GT:AD:DP:GQ:PL    0/1:25,15:40:99:393,0,814
2    106015194    rs60968240    G    C    32.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322142    GT:AD:DP:GQ:PL    0/1:4,4:8:62.85:63,0,106
2    106471393    rs6543345    T    C    174.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233154    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
2    106472383    rs6752686    T    C    40.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=32.69;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233154    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
2    106472788    rs3835871    C    CATT    847.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=37.373;IndelType=I;MQ=54.07;MQ0=0;QD=65.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233154    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:889,39,0
2    106497649    rs13003975    C    A    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233154    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:69,0,66
2    106690137    rs4851111    G    A    157.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.581;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.581;QD=11.22;ReadPosRankSum=-1.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493478    GT:AD:DP:GQ:PL    0/1:8,6:14:99:187,0,266
2    106710668    rs11268588    C    CGCAGGAAGGAAGTGCCACCTT    2093.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=0;HaplotypeScore=747.5816;IndelType=I;MQ=50.88;MQ0=0;QD=38.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:48,5:54:33.11:2136,33,0
2    106714953    rs1869064    A    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428048    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    106715342    rs3820891    G    A    704.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.89;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428048    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:738,57,0
2    106717656    rs10177888    G    A    722.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416298    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:756,60,0
2    106717743    rs10202208    C    T    316    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416298    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:349,27,0
2    106721555    rs1901469    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
2    106739322    rs79303959    C    A    861.47    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=2.044;QD=17.23;ReadPosRankSum=0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436241    GT:AD:DP:GQ:PL    0/1:23,27:50:99:891,0,732
2    106739752    rs11325302    AG    A    241.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=33.9411;IndelType=D;MQ=62.36;MQ0=0;QD=26.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:1,8:9:24.07:284,24,0
2    106742139    rs4851925    C    T    550.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:583,42,0
2    106742177    rs3739137    T    A    341.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:374,27,0
2    106774298    rs6732473    A    G    31.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=10.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474920    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:63,6,0
2    106780015    rs3910716    C    T    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    106780055    rs10631203    C    CTG    385.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=32.7821;IndelType=I;MQ=56.62;MQ0=0;QD=55.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:1,6:7:21.07:427,21,0
2    106782398    rs4851115    C    G    1226.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:0,33:33:96.29:1259,96,0
2    106782719    rs76110416    A    C    198.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UXS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283148    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
2    106988815    rs144195123    A    G    85.61    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=17;Dels=0.0;FS=6.368;HRun=1;HaplotypeScore=0.0;MQ=37.69;MQ0=2;MQRankSum=-1.776;QD=5.04;ReadPosRankSum=-0.551;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC114755.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447760    GT:AD:DP:GQ:PL    0/1:10,7:17:99:116,0,255
2    106992952    rs4641931    A    G    78.57    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.85;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=42.9;MQ0=0;MQRankSum=-0.788;QD=4.62;ReadPosRankSum=-0.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC114755.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447760    GT:AD:DP:GQ:PL    0/1:12,5:17:99:109,0,335
2    106992963    rs11464214    A    AG    144.99    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=1.926;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=58.0813;IndelType=I;MQ=43.52;MQ0=0;MQRankSum=-0.906;QD=8.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC114755.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447760    GT:AD:DP:GQ:PL    0/1:11,6:17:99:184,0,414
2    106994382    rs62145217    A    G    40.99    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.04;MQ0=1;MQRankSum=0.736;QD=10.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC114755.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447760    GT:AD:DP:GQ:PL    0/1:2,2:4:30.98:71,0,31
2    106998377    rs10169094    G    A    55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=44.01;MQ0=0;MQRankSum=0.358;QD=11.0;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC114755.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447760    GT:AD:DP:GQ:PL    0/1:2,3:5:55.26:85,0,55
2    107002646    rs4384784    G    C    2112.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.03;MQ0=0;QD=32.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541826    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2145,165,0
2    107007576    rs60043380    A    T    706.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.69;MQ0=5;QD=23.54;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541826    GT:AD:DP:GQ:PL    1/1:2,28:30:66.10:739,66,0
2    107007994    .    TA    T    798.09    PASS    AC=2;AF=1.00;AN=2;DP=39;FS=0.0;HRun=11;HaplotypeScore=122.1983;IndelType=D;MQ=19.14;MQ0=14;QD=10.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541826    GT:AD:DP:GQ:PL    1/1:12,62:39:99:840,104,0
2    107008058    rs62145229    A    G    110.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.99;MQ0=6;QD=3.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541826    GT:AD:DP:GQ:PL    1/1:5,23:28:17.95:143,18,0
2    107017152    rs832326    C    T    62.88    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.82;MQ0=0;MQRankSum=0.727;QD=15.72;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409886    GT:AD:DP:GQ:PL    0/1:1,3:4:9.66:93,0,10
2    107017777    .    G    C    477.50    MQFilter40    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DP=121;Dels=0.0;FS=4.499;HRun=0;HaplotypeScore=0.7887;MQ=22.71;MQ0=55;MQRankSum=1.149;QD=3.95;ReadPosRankSum=0.563;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409886    GT:AD:DP:GQ:PL    0/1:81,39:121:99:507,0,875
2    107032279    rs6543411    T    C    4092.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=34.69;MQ0=12;QD=24.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    1/1:0,169:170:99:4093,358,0
2    107039595    .    T    C    43.23    MQFilter40;QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.66;MQ0=235;MQRankSum=-0.637;QD=0.17;ReadPosRankSum=0.752;SNPEFF_AMINO_ACID_CHANGE=I1610V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_107039499_107041722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    0/1:210,39:250:73.23:73,0,174
2    107040369    .    C    T    1805.91    MQFilter40    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DP=250;DS;Dels=0.0;FS=2.289;HRun=4;HaplotypeScore=0.0;MQ=29.78;MQ0=38;MQRankSum=-0.048;QD=7.22;ReadPosRankSum=-0.168;SNPEFF_AMINO_ACID_CHANGE=E1352K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_107039499_107041722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    0/1:144,106:250:99:1836,0,2289
2    107040564    rs55993306    C    T    2328.90    MQFilter40    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.397;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7356;MQ=26.89;MQ0=16;MQRankSum=-0.423;QD=9.32;ReadPosRankSum=-1.186;SNPEFF_AMINO_ACID_CHANGE=E1287K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_107039499_107041722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    0/1:132,118:250:99:2359,0,2706
2    107042413    .    G    A    186.59    MQFilter40    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=0.746;DP=79;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=24.64;MQ0=28;MQRankSum=-2.54;QD=2.36;ReadPosRankSum=-2.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    0/1:65,14:79:99:217,0,1150
2    107042620    .    C    T    257.29    MQFilter40    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9961;MQ=39.1;MQ0=1;MQRankSum=0.192;QD=2.89;ReadPosRankSum=-0.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    0/1:72,17:89:99:287,0,2063
2    107057642    rs145239949    A    T    677.89    MQFilter40    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.3;MQ0=0;MQRankSum=-1.135;QD=16.53;ReadPosRankSum=2.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    0/1:20,21:41:99:708,0,615
2    107073469    rs76857936    T    A    4774.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=232;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=29.94;MQ0=53;QD=20.58;SNPEFF_AMINO_ACID_CHANGE=A121;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_107073427_107073579;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    1/1:40,192:232:99:4775,439,0
2    107073501    rs72627454    C    T    4906.82    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.768;DB;DP=214;DS;Dels=0.0;FS=4.916;HRun=1;HaplotypeScore=2.9156;MQ=32.03;MQ0=35;MQRankSum=2.52;QD=22.93;ReadPosRankSum=1.345;SNPEFF_AMINO_ACID_CHANGE=D111N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_107073427_107073579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    1/1:33,181:214:99:4907,415,0
2    107073736    rs56077036    C    A    270.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=19.31;MQ0=4;QD=15.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    1/1:0,18:18:35.93:304,36,0
2    107073804    rs60279773    C    T    81.74    MQFilter40    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.83;MQ0=11;MQRankSum=0.729;QD=4.09;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    0/1:11,9:20:65.73:112,0,66
2    107074108    .    C    T    47.32    MQFilter40;QDFilter2    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=3.685;DP=225;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=6.09;MQ0=192;MQRankSum=-0.172;QD=0.21;ReadPosRankSum=1.432;SNPEFF_AMINO_ACID_CHANGE=R56Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_107074023_107074134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    0/1:171,53:225:77.31:77,0,208
2    107079704    .    A    G    55.74    MQFilter40    AC=2;AF=1.00;AN=2;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.35;MQ0=6;QD=6.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304514    GT:AD:DP:GQ:PL    1/1:0,9:9:9.01:88,9,0
2    107107567    rs2228021    G    C    1087.23    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.39;DB;DP=141;Dels=0.0;FS=13.888;HRun=1;HaplotypeScore=3.7993;MQ=44.19;MQ0=5;MQRankSum=-0.611;QD=7.66;ReadPosRankSum=1.211;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC108868.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303432    GT:AD:DP:GQ:PL    0/1:72,69:141:99:1117,0,1996
2    107107694    rs6543414    A    G    1825.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.12;MQ0=14;QD=18.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC108868.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303432    GT:AD:DP:GQ:PL    1/1:0,97:97:99:1858,171,0
2    107107765    rs6543415    C    A    1391.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.41;MQ0=0;QD=32.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC108868.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303432    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1424,108,0
2    107118896    rs4340514    T    C    178.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.35;MQ0=0;QD=25.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC108868.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303432    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:211,18,0
2    107120812    rs62154001    T    A    47.24    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=1.05;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=40.19;MQ0=2;MQRankSum=1.55;QD=2.15;ReadPosRankSum=0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC108868.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416057    GT:AD:DP:GQ:PL    0/1:18,4:22:77.24:77,0,332
2    107121040    rs67607254    T    TA    514.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DB;DP=22;FS=0.0;HRun=9;HaplotypeScore=54.5772;IndelType=I;MQ=36.8;MQ0=0;MQRankSum=0.0;QD=20.59;ReadPosRankSum=-1.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC108868.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416057    GT:AD:DP:GQ:PL    1/1:4,21:22:46.89:557,47,0
2    107423128    rs3796114    C    T    356.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.75;DB;DP=35;Dels=0.0;FS=2.958;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.283;QD=10.2;ReadPosRankSum=0.083;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    0/1:20,15:35:99:387,0,706
2    107429801    rs6739022    C    T    248.25    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.016;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.92;MQ0=0;MQRankSum=-0.462;QD=10.79;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    0/1:12,11:23:99:278,0,385
2    107446370    rs5833213    GA    G    671.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=11;HaplotypeScore=268.6464;IndelType=D;MQ=60.36;MQ0=0;QD=22.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    1/1:1,29:30:86.90:714,87,0
2    107446396    rs877693    T    C    1506.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.28;MQ0=0;QD=38.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1540,114,0
2    107446430    rs935565    T    C    1868.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.2;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1901,147,0
2    107446878    rs34368675    C    T    109.59    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.92;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:140,0,27
2    107448988    rs12623034    C    T    646.38    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.442;QD=14.05;ReadPosRankSum=-0.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    0/1:24,22:46:99:676,0,689
2    107449321    rs56781498    A    T    31.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
2    107450525    rs12615112    T    C    1392.91    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.343;DB;DP=111;Dels=0.0;FS=10.651;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.707;QD=12.55;ReadPosRankSum=-1.241;SNPEFF_AMINO_ACID_CHANGE=I341V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_107450505_107450602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    0/1:59,52:111:99:1423,0,1728
2    107450589    rs3796111    C    T    914.98    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=5.396;DB;DP=75;Dels=0.0;FS=3.033;HRun=0;HaplotypeScore=0.6651;MQ=59.69;MQ0=0;MQRankSum=0.363;QD=12.2;ReadPosRankSum=-0.266;SNPEFF_AMINO_ACID_CHANGE=A319;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_107450505_107450602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361686    GT:AD:DP:GQ:PL    0/1:40,34:75:99:945,0,1234
2    108443325    rs1619178    T    C    172.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=28.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:205,15,0
2    108443328    rs3113782    A    T    167.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=27.98;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
2    108443511    rs7576738    C    G    1316.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=48.42;MQ0=1;QD=28.01;SNPEFF_AMINO_ACID_CHANGE=S14;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108443388_108443541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1350,111,0
2    108443567    rs62159106    G    A    825.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.09;MQ0=0;QD=28.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:0,29:29:66.19:859,66,0
2    108443591    rs7603113    A    C    626.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.23;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:0,22:22:57.15:660,57,0
2    108443598    rs7577032    G    C    573.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.99;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:0,20:20:51.13:606,51,0
2    108443647    rs78477381    C    G    73.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.26;MQ0=0;QD=10.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:0,7:7:9.02:105,9,0
2    108453186    .    C    A    45.01    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.23;MQ0=14;QD=1.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:5,19:24:8.99:77,9,0
2    108475958    rs142985549    A    G    5655.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7074;MQ=27.68;MQ0=18;QD=22.71;SNPEFF_AMINO_ACID_CHANGE=R286G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108475835_108476010;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439322    GT:AD:DP:GQ:PL    1/1:9,240:249:99:5656,552,0
2    108479432    .    G    A    2751.99    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.758;DP=197;Dels=0.0;FS=3.054;HRun=0;HaplotypeScore=3.4594;MQ=20.41;MQ0=74;MQRankSum=0.958;QD=13.97;ReadPosRankSum=1.175;SNPEFF_AMINO_ACID_CHANGE=A563T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108479405_108479488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439322    GT:AD:DP:GQ:PL    1/1:35,162:197:99:2785,233,0
2    108479487    .    A    T    439.15    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.669;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=10.47;MQ0=104;MQRankSum=-0.157;QD=2.73;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=K581M;SNPEFF_CODON_CHANGE=aAg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108479405_108479488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439322    GT:AD:DP:GQ:PL    1/1:45,115:161:53.99:472,54,0
2    108486470    .    C    T    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=11.4;MQ0=35;QD=3.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:34,10:44:15.04:167,15,0
2    108487097    .    G    A    900.46    MQFilter40    AC=2;AF=1.00;AN=2;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=12.65;MQ0=82;QD=6.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:58,81:139:99:933,108,0
2    108487330    rs148409227    A    G    2724.71    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.56;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4398;MQ=17.21;MQ0=115;MQRankSum=1.029;QD=10.9;ReadPosRankSum=-1.289;SNPEFF_AMINO_ACID_CHANGE=N715S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108487161_108488057;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439322    GT:AD:DP:GQ:PL    1/1:63,187:250:99:2758,288,0
2    108487826    rs62150212    C    T    66.53    MQFilter40;QDFilter2    AB=0.015;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.621;DB;DP=67;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.76;MQ0=36;MQRankSum=-1.509;QD=0.99;ReadPosRankSum=-1.621;SNPEFF_AMINO_ACID_CHANGE=P1122;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108487161_108489384;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    0/1:1,66:67:11.69:96,0,12
2    108487829    rs141407602    G    C    38.97    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.79;MQ0=36;QD=0.66;SNPEFF_AMINO_ACID_CHANGE=L1123;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108487161_108489384;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:1,58:59:8.96:71,9,0
2    108494855    .    G    GA    198.26    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=9.4108;IndelType=I;MQ=29.0;MQ0=0;QD=39.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
2    108496435    rs832352    T    A    4185.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=210;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.09;MQ0=77;QD=19.93;SNPEFF_AMINO_ACID_CHANGE=W1013R;SNPEFF_CODON_CHANGE=Tgg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108496424_108496563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439322    GT:AD:DP:GQ:PL    1/1:22,187:210:99:4186,352,0
2    108499667    rs832347    C    T    168.02    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=6.31;MQ0=78;QD=1.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354986    GT:AD:DP:GQ:PL    1/1:25,66:91:26.86:201,27,0
2    108511073    .    G    T    611.48    MQFilter40    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=3.393;DP=104;Dels=0.0;FS=6.495;HRun=2;HaplotypeScore=6.2075;MQ=24.28;MQ0=32;MQRankSum=-1.062;QD=5.88;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408999    GT:AD:DP:GQ:PL    0/1:63,41:104:99:641,0,571
2    108511695    rs79631772    G    A    55.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.44;MQ0=0;QD=18.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408999    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:88,9,0
2    108520248    rs77981735    G    C    40.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.76;MQ0=1;QD=10.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC009963.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453431    GT:AD:DP:GQ:PL    1/1:0,4:4:8.98:72,9,0
2    108622812    rs72500448    TTA    T    168.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=122.7931;IndelType=D;MQ=48.43;MQ0=0;QD=15.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264047    GT:AD:DP:GQ:PL    1/1:5,6:11:15.05:210,15,0
2    108626468    rs6753886    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264047    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    108863767    rs9308806    A    C    2476.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.254;MQ=58.67;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=V39;SNPEFF_CODON_CHANGE=gtA/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108863651_108863822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329106    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2510,190,0
2    108868711    rs17819861    T    C    148.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=14.88;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329106    GT:AD:DP:GQ:PL    0/1:4,6:10:99:179,0,135
2    108872012    rs13392744    C    T    669.25    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.639;DB;DP=66;Dels=0.0;FS=8.873;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.078;QD=10.14;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329106    GT:AD:DP:GQ:PL    0/1:39,27:66:99:699,0,1264
2    108875024    rs6542757    G    T    148.10    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.68;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329106    GT:AD:DP:GQ:PL    0/1:1,5:6:19.74:178,0,20
2    108875244    rs6722745    T    C    860.06    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.568;DB;DP=62;Dels=0.0;FS=5.519;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.962;QD=13.87;ReadPosRankSum=-1.237;SNPEFF_AMINO_ACID_CHANGE=M194T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108875190_108875284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329106    GT:AD:DP:GQ:PL    0/1:28,34:62:99:890,0,744
2    108875464    rs72322214    AAAACTTGGTCAGGTGATGTTAT    A    1407.87    PASS    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=4.672;DB;DP=58;FS=1.354;HRun=0;HaplotypeScore=1097.7769;IndelType=D;MQ=55.44;MQ0=0;MQRankSum=-2.921;QD=24.27;ReadPosRankSum=0.898;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_108875422_108875602;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000376700    GT:AD:DP:GQ:PL    0/1:48,10:58:99:1447,0,10101
2    108876897    rs11687745    A    G    809.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329106    GT:AD:DP:GQ:PL    1/1:0,25:25:69.17:842,69,0
2    108876902    rs79597181    G    A    98.24    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.95;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.807;QD=3.39;ReadPosRankSum=-0.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329106    GT:AD:DP:GQ:PL    0/1:14,15:29:99:128,0,493
2    108876948    rs4141931    C    T    2059.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329106    GT:AD:DP:GQ:PL    1/1:0,56:57:99:2093,160,0
2    108877062    rs4141932    T    A    3666.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5782;MQ=59.82;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=L281M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108877024_108877136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376700    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3666,274,0
2    108921433    rs73952184    C    T    149.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=10.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=16.62;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438339    GT:AD:DP:GQ:PL    0/1:3,6:9:88.70:180,0,89
2    108994808    rs1402467    C    G    1202.35    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.215;DB;DP=98;Dels=0.0;FS=0.808;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.247;QD=12.27;ReadPosRankSum=0.026;SNPEFF_AMINO_ACID_CHANGE=D5E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_108994468_108994962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SULT1C4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272452    GT:AD:DP:GQ:PL    0/1:54,44:98:99:1232,0,1828
2    108998797    rs4149434    A    AG    1021.07    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=7.74;DB;DP=115;FS=2.259;HRun=1;HaplotypeScore=497.5711;IndelType=I;MQ=59.8;MQ0=0;MQRankSum=-0.432;QD=8.88;ReadPosRankSum=-1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SULT1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272452    GT:AD:DP:GQ:PL    0/1:69,41:115:99:1060,0,1918
2    108998798    rs34003233    T    G    33.11    HaplotypeScoreFilter13;QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=110;Dels=0.04;FS=4.662;HRun=0;HaplotypeScore=60.7988;MQ=59.8;MQ0=0;MQRankSum=0.088;QD=0.29;ReadPosRankSum=-2.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SULT1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272452    GT:AD:DP:GQ:PL    0/1:58,8:110:63.11:63,0,1958
2    108999483    .    CA    C    46.06    QDFilter2    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DP=35;FS=1.906;HRun=18;HaplotypeScore=160.5101;IndelType=D;MQ=53.76;MQ0=0;MQRankSum=1.224;QD=1.32;ReadPosRankSum=1.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SULT1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494122    GT:AD:DP:GQ:PL    0/1:24,8:35:85.09:85,0,207
2    108999786    rs4149436    T    C    275.11    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=19;Dels=0.0;FS=1.829;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=14.48;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SULT1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494122    GT:AD:DP:GQ:PL    0/1:10,9:19:99:305,0,343
2    109066234    .    AT    A    133.50    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DP=28;FS=0.0;HRun=13;HaplotypeScore=114.565;IndelType=D;MQ=59.56;MQ0=0;MQRankSum=0.789;QD=4.77;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:17,11:28:99:173,0,305
2    109066288    rs2460945    A    G    355.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:388,30,0
2    109069008    rs2683797    T    C    549.48    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.973;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7873;MQ=60.0;MQ0=0;MQRankSum=0.695;QD=17.73;ReadPosRankSum=1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467566    GT:AD:DP:GQ:PL    0/1:14,17:31:99:579,0,497
2    109089404    rs2243888    C    G    353.65    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=29.47;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393318    GT:AD:DP:GQ:PL    0/1:1,11:12:8.65:383,0,9
2    109098065    .    C    T    657.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.296;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.32;QD=18.78;ReadPosRankSum=0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:14,21:35:99:687,0,446
2    109098384    rs2718700    C    A    133.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.222;QD=9.55;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:6,8:14:99:164,0,204
2    109098998    rs2577615    A    G    186.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.56;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:6,6:12:99:217,0,173
2    109099385    rs2577614    C    T    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
2    109099477    rs2577613    A    G    331.42    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=16;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=-1.653;QD=20.71;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:5,11:16:99:361,0,125
2    109099572    rs2718698    C    G    1152.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=Q1134E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_109099518_109099622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1185,87,0
2    109102534    rs2577586    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481729    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    109116699    rs2438255    G    A    42.14    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.18;MQ0=1;MQRankSum=0.322;QD=4.68;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:5,4:9:72.13:72,0,126
2    109123996    rs2577596    T    G    855.04    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.0742;MQ=59.28;MQ0=0;MQRankSum=0.306;QD=14.74;ReadPosRankSum=0.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:22,36:58:99:885,0,514
2    109127984    rs62148112    C    T    810.75    MQFilter40    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.678;DB;DP=113;Dels=0.0;FS=4.117;HRun=2;HaplotypeScore=2.5361;MQ=25.32;MQ0=1;MQRankSum=-3.099;QD=7.17;ReadPosRankSum=0.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:60,53:113:99:841,0,1156
2    109128054    rs62148144    C    A    132.61    MQFilter40    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.812;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=17.38;MQ0=22;MQRankSum=-2.658;QD=2.29;ReadPosRankSum=0.748;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:40,18:58:99:163,0,450
2    109128231    .    C    T    40.22    MQFilter40;QDFilter2    AB=0.912;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.58;MQ0=57;MQRankSum=-1.377;QD=0.59;ReadPosRankSum=-1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:62,6:68:70.22:70,0,210
2    109128260    rs73954372    G    A    34.21    MQFilter40;QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.11;MQ0=52;MQRankSum=-1.849;QD=0.53;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:56,8:64:64.20:64,0,277
2    109128296    rs73954373    A    G    40.23    MQFilter40;QDFilter2    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.034;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.9;MQ0=34;MQRankSum=-1.479;QD=0.87;ReadPosRankSum=0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:38,8:46:70.23:70,0,212
2    109128310    rs111963733    T    C    59.21    MQFilter40;QDFilter2    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=47;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.0;MQ=20.28;MQ0=29;MQRankSum=-1.479;QD=1.26;ReadPosRankSum=-0.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:32,15:47:89.21:89,0,364
2    109128319    rs112503499    G    A    62.24    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=40;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=21.49;MQ0=23;MQRankSum=-1.212;QD=1.56;ReadPosRankSum=-1.845;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309863    GT:AD:DP:GQ:PL    0/1:32,8:40:92.23:92,0,323
2    109276099    rs74632558    G    A    410.54    MQFilter40    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=4.256;DB;DP=113;Dels=0.0;FS=0.977;HRun=0;HaplotypeScore=0.0;MQ=27.34;MQ0=14;MQRankSum=-0.807;QD=3.63;ReadPosRankSum=-0.621;SNPEFF_AMINO_ACID_CHANGE=R12H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_109276061_109276220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332345    GT:AD:DP:GQ:PL    0/1:82,30:113:99:441,0,1532
2    109276178    .    C    T    611.44    MQFilter40    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=2.942;DP=152;Dels=0.0;FS=1.7;HRun=0;HaplotypeScore=2.9508;MQ=31.22;MQ0=13;MQRankSum=-1.887;QD=4.02;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=C100;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_109276061_109276220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393314    GT:AD:DP:GQ:PL    0/1:108,44:152:99:641,0,2127
2    109292280    rs7584953    T    C    236.29    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=23;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=1.8319;MQ=58.54;MQ0=0;MQRankSum=-1.352;QD=10.27;ReadPosRankSum=1.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422797    GT:AD:DP:GQ:PL    0/1:12,11:23:99:266,0,435
2    109389463    rs826580    G    A    405.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_AMINO_ACID_CHANGE=E1775;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_109389324_109389502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409491    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:438,33,0
2    109393522    rs66479531    TG    T    711.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=4;HaplotypeScore=66.6164;IndelType=D;MQ=60.45;MQ0=0;QD=29.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283195    GT:AD:DP:GQ:PL    1/1:3,21:24:63.19:754,63,0
2    109407894    rs11675329    A    G    72.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=52.61;MQ0=0;MQRankSum=-0.406;QD=12.13;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295124    GT:AD:DP:GQ:PL    0/1:3,3:6:95.92:103,0,96
2    109411248    rs111234702    GAATAT    G    345.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=63.0269;IndelType=D;MQ=53.23;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447782    GT:AD:DP:GQ:PL    1/1:4,7:11:21.07:388,21,0
2    109421621    rs4536612    G    A    84.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295124    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    109429146    rs975597    T    A    4188.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.531;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-0.279;QD=32.98;ReadPosRankSum=-0.028;SNPEFF_AMINO_ACID_CHANGE=A305;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_109429087_109429164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC138;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295124    GT:AD:DP:GQ:PL    1/1:1,126:127:99:4188,277,0
2    109489753    rs71383811    AATG    A    640.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=75.4405;IndelType=D;MQ=49.96;MQ0=0;QD=42.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295124    GT:AD:DP:GQ:PL    1/1:1,14:15:44.36:683,44,0
2    109490104    rs6737810    A    G    702.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295124    GT:AD:DP:GQ:PL    1/1:0,21:21:57.16:735,57,0
2    109490146    rs11686550    A    G    410.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295124    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:443,33,0
2    109492907    rs14402    A    G    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295124    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    109513321    rs7607563    C    A    455.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.95;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258443    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:488,36,0
2    109513654    rs12623957    G    A    1115.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_AMINO_ACID_CHANGE=C352;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_109510927_109513685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDAR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258443    GT:AD:DP:GQ:PL    1/1:0,35:35:84.26:1149,84,0
2    109513786    rs3789738    A    T    56.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258443    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:89,9,0
2    109522720    rs260639    G    A    683.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.3506;MQ=58.89;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258443    GT:AD:DP:GQ:PL    1/1:0,20:21:54.17:716,54,0
2    109523038    rs260638    G    T    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258443    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    109526969    rs260632    G    A    660.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=S250;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_109526916_109526988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDAR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258443    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:694,51,0
2    109527087    rs260631    G    A    313.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258443    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:347,27,0
2    109527373    rs260630    A    G    849.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=F229L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_109527232_109527528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDAR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376651    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:882,69,0
2    109988215    rs11680644    C    G    37.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.27;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3RF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309415    GT:AD:DP:GQ:PL    0/1:4,2:6:67.59:68,0,138
2    110372192    rs6594048    A    G    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_AMINO_ACID_CHANGE=L42;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_110371911_110376563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356454    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
2    110746204    rs114323162    G    C    85.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=21.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC013268.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453019    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
2    110882699    rs2048243    A    G    568.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.868;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.05;MQ0=0;MQRankSum=2.078;QD=11.59;ReadPosRankSum=1.455;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493051    GT:AD:DP:GQ:PL    0/1:28,21:49:99:598,0,907
2    110884627    rs72826888    C    T    164.88    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=20.61;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493051    GT:AD:DP:GQ:PL    0/1:2,6:8:41.86:195,0,42
2    110889108    rs11240790    C    T    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316534    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
2    110902262    rs3752863    G    A    82.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.52;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316534    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:112,0,29
2    110905664    rs1509417    G    A    271.35    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.705;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=9.36;ReadPosRankSum=0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316534    GT:AD:DP:GQ:PL    0/1:17,12:29:99:301,0,607
2    110905743    rs1509416    T    A    104.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.42;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316534    GT:AD:DP:GQ:PL    0/1:6,4:10:99:134,0,224
2    110919041    rs3817140    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316534    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    110919321    rs2271244    C    T    224.24    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=20.39;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316534    GT:AD:DP:GQ:PL    0/1:4,7:11:99:254,0,131
2    110922064    rs71793890    C    CA    41.68    QDFilter2    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=117;FS=4.553;HRun=15;HaplotypeScore=662.7971;IndelType=I;MQ=55.81;MQ0=0;MQRankSum=0.961;QD=0.36;ReadPosRankSum=-0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316534    GT:AD:DP:GQ:PL    0/1:92,13:117:80.71:81,0,791
2    110922703    rs11675767    C    T    1322.27    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.138;DB;DP=105;Dels=0.0;FS=1.57;HRun=1;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=-1.336;QD=12.59;ReadPosRankSum=-0.516;SNPEFF_AMINO_ACID_CHANGE=E156;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_110922629_110922732;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355301    GT:AD:DP:GQ:PL    0/1:53,52:105:99:1352,0,1596
2    110935867    rs2271245    A    G    278.75    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=17.42;ReadPosRankSum=-2.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316534    GT:AD:DP:GQ:PL    0/1:5,11:16:99:309,0,170
2    111644491    rs72298710    TA    T    906.07    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=4.628;DB;DP=47;FS=0.0;HRun=2;HaplotypeScore=120.3384;IndelType=D;MQ=59.34;MQ0=0;MQRankSum=-0.77;QD=19.28;ReadPosRankSum=-0.878;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389811    GT:AD:DP:GQ:PL    0/1:19,28:47:99:945,0,713
2    111644595    rs10188169    C    T    98.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=14.06;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389811    GT:AD:DP:GQ:PL    0/1:2,5:7:44.63:128,0,45
2    111721142    rs111296659    ATGTGTG    A    424.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=103.3463;IndelType=D;MQ=37.43;MQ0=0;QD=26.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389811    GT:AD:DP:GQ:PL    1/1:9,7:16:24.08:467,24,0
2    111753449    rs3761707    G    C    954.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389811    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:987,72,0
2    111907691    rs724710    T    C    293.60    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.26;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=58.15;MQ0=0;MQRankSum=-1.045;QD=8.9;ReadPosRankSum=-0.931;SNPEFF_AMINO_ACID_CHANGE=I155;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_111907621_111907724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL2L11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357757    GT:AD:DP:GQ:PL    0/1:18,15:33:99:324,0,616
2    111909247    rs3789068    A    G    175.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=21.99;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL2L11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308659    GT:AD:DP:GQ:PL    0/1:2,6:8:53.74:206,0,54
2    112526866    rs137999262    G    A    1190.72    MQFilter40    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=4.821;DB;DP=187;Dels=0.0;FS=1.505;HRun=0;HaplotypeScore=2.5338;MQ=23.95;MQ0=45;MQRankSum=1.343;QD=6.37;ReadPosRankSum=-0.336;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462785    GT:AD:DP:GQ:PL    0/1:113,74:187:99:1221,0,1349
2    112536264    rs76115652    G    T    718.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.93;MQ0=49;QD=6.53;SNPEFF_AMINO_ACID_CHANGE=I1791;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112536252_112536347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    1/1:0,110:110:84.03:752,84,0
2    112552427    rs190739040    C    T    121.30    MQFilter40;QDFilter2    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.433;DB;DP=68;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.8941;MQ=14.28;MQ0=44;MQRankSum=-2.26;QD=1.78;ReadPosRankSum=0.869;SNPEFF_AMINO_ACID_CHANGE=P1447;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112552395_112552471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:46,22:68:99:151,0,245
2    112560090    rs142711068    G    A    35.03    MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.51;MQ0=39;MQRankSum=-0.365;QD=0.71;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485325    GT:AD:DP:GQ:PL    0/1:34,15:49:38.35:65,0,38
2    112566517    .    C    T    144.95    MQFilter40;QDFilter2    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DP=91;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=10.08;MQ0=51;MQRankSum=1.291;QD=1.59;ReadPosRankSum=0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:67,24:91:99:175,0,131
2    112582766    rs60136848    CTT    C    1848.29    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=7.492;DB;DP=84;FS=0.998;HRun=2;HaplotypeScore=264.9911;IndelType=D;MQ=58.82;MQ0=0;MQRankSum=1.133;QD=22.0;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:40,44:84:99:1887,0,2166
2    112583476    rs12614297    C    T    211.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.811;QD=16.25;ReadPosRankSum=-1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:6,7:13:99:241,0,215
2    112588751    rs7587482    C    T    31.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.1;MQ0=1;MQRankSum=-0.198;QD=3.9;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:5,3:8:61.17:61,0,185
2    112589080    rs11675449    G    A    51.27    MQFilter40;QDFilter2    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=17.13;MQ0=19;MQRankSum=-0.361;QD=1.83;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:17,11:28:81.26:81,0,124
2    112604685    rs71413401    T    C    623.03    MQFilter40    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.511;DB;DP=50;Dels=0.0;FS=12.587;HRun=0;HaplotypeScore=0.734;MQ=36.29;MQ0=4;MQRankSum=1.169;QD=12.46;ReadPosRankSum=-1.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:27,23:50:99:653,0,516
2    112605302    rs4848197    C    T    166.44    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.862;DB;DP=81;Dels=0.0;FS=19.905;HRun=0;HaplotypeScore=1.9964;MQ=46.93;MQ0=7;MQRankSum=-6.342;QD=2.05;ReadPosRankSum=1.056;SNPEFF_AMINO_ACID_CHANGE=L597;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112605302_112605442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:55,25:81:99:196,0,1804
2    112605465    rs4848800    T    C    1628.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.35;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1662,123,0
2    112615933    rs72936244    T    C    42.45    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=2.922;DB;DP=28;Dels=0.0;FS=4.601;HRun=0;HaplotypeScore=0.0;MQ=46.81;MQ0=0;MQRankSum=-1.74;QD=1.52;ReadPosRankSum=1.543;SNPEFF_AMINO_ACID_CHANGE=L436;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112615883_112615978;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341068    GT:AD:DP:GQ:PL    0/1:24,4:28:72.44:72,0,781
2    112621199    rs11689168    T    C    438.85    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=56.56;MQ0=0;MQRankSum=0.218;QD=16.25;ReadPosRankSum=1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451367    GT:AD:DP:GQ:PL    0/1:13,14:27:99:469,0,441
2    112622643    rs71414605    A    G    214.81    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.572;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.33;MQ0=0;MQRankSum=-3.062;QD=11.31;ReadPosRankSum=1.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451367    GT:AD:DP:GQ:PL    0/1:9,10:19:99:245,0,313
2    112622650    rs56711676    T    C    206.30    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.33;MQ0=0;MQRankSum=-3.062;QD=10.86;ReadPosRankSum=0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451367    GT:AD:DP:GQ:PL    0/1:9,10:19:99:236,0,323
2    112625575    rs6742515    T    C    449.51    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=25;Dels=0.0;FS=6.862;HRun=1;HaplotypeScore=0.0;MQ=59.88;MQ0=0;MQRankSum=1.729;QD=17.98;ReadPosRankSum=1.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489177    GT:AD:DP:GQ:PL    0/1:9,16:25:99:480,0,229
2    112636685    rs10175926    G    A    110.12    MQFilter40    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.58;MQ0=2;MQRankSum=-1.932;QD=8.47;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104651.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557509    GT:AD:DP:GQ:PL    0/1:5,8:13:99:140,0,172
2    112636761    rs10167739    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=15.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104651.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557509    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
2    112686988    rs13027171    G    A    1702.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=S118N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112686697_112687117;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1735,126,0
2    112702647    rs11683694    C    T    486.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:520,39,0
2    112704862    rs7601798    A    G    213.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,12:12:24.01:247,24,0
2    112705157    rs3761701    T    C    1405.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1438,114,0
2    112705185    rs3761700    G    T    1109.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.3;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1142,84,0
2    112705290    rs3761699    G    A    242.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
2    112725684    rs113538397    A    ATGTGTG    3310.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=183.8198;IndelType=I;MQ=45.45;MQ0=0;QD=71.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:7,35:46:99:3311,117,0
2    112732716    rs2138568    A    G    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    112740246    rs1996322    C    T    196.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
2    112740373    rs1996323    G    A    1670.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1704,126,0
2    112751737    rs77739234    G    A    871.66    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.782;DB;DP=62;Dels=0.0;FS=5.073;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=14.06;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    0/1:30,31:62:99:902,0,706
2    112751928    rs7604639    G    A    2846.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.49;SNPEFF_AMINO_ACID_CHANGE=R290K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112751828_112751981;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409780    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2879,214,0
2    112752142    rs7592909    A    C    1039.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,28:28:84.26:1072,84,0
2    112754720    rs4848238    A    C    2211.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2245,175,0
2    112754880    rs3811633    G    A    7967.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.228;DB;DP=236;Dels=0.0;FS=9.492;HRun=0;HaplotypeScore=4.543;MQ=59.9;MQ0=0;MQRankSum=-0.513;QD=33.76;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=G121D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112754873_112754893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393237    GT:AD:DP:GQ:PL    1/1:3,232:236:99:7967,493,0
2    112754943    rs3811634    C    T    5923.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DB;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.591;QD=34.85;ReadPosRankSum=0.334;SNPEFF_AMINO_ACID_CHANGE=R142C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112754895_112754984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393237    GT:AD:DP:GQ:PL    1/1:4,166:170:99:5924,342,0
2    112755001    rs2230515    A    G    3884.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-1.698;QD=35.97;ReadPosRankSum=0.216;SNPEFF_AMINO_ACID_CHANGE=I160V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112754989_112755053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393237    GT:AD:DP:GQ:PL    1/1:2,106:108:99:3885,217,0
2    112755209    rs3811636    G    A    112.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
2    112761653    rs4848933    C    G    527.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473065    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:560,42,0
2    112765973    rs1131244    A    G    1717.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=S269;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_112765960_112766072;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393237    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1750,141,0
2    112766262    rs10210692    A    G    442.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:476,36,0
2    112776726    rs3811638    A    G    278.98    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.423;QD=25.36;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    0/1:1,10:11:11.14:309,0,11
2    112785775    rs4848958    T    C    243.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MERTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295408    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:277,21,0
2    112813163    rs10176769    G    A    116.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_112812800_112813333;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283206    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
2    112813391    rs9308665    C    G    281.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283206    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:315,27,0
2    112832535    rs77244388    CAAT    C    1362.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=114.9173;IndelType=D;MQ=58.58;MQ0=0;QD=52.42;SNPEFF_AMINO_ACID_CHANGE=SM166S;SNPEFF_CODON_CHANGE=tcaatg/tcg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_2_112832489_112832539;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283206    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1405,78,0
2    112832684    rs6542026    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283206    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    112847164    rs11123128    C    T    948.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283206    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:982,75,0
2    112856165    rs4849007    C    A    1347.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283206    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1381,102,0
2    112858122    rs4848272    C    T    628.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283206    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:661,48,0
2    112865517    rs7562848    G    C    617.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463427    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:651,48,0
2    112917102    rs1320360    G    C    155.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331203    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:188,15,0
2    112945188    rs4848281    T    A    315.78    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.334;QD=14.35;ReadPosRankSum=-1.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441565    GT:AD:DP:GQ:PL    0/1:9,13:22:99:346,0,292
2    113145814    .    C    T    438.04    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.262;DP=242;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.74;MQ0=177;MQRankSum=3.116;QD=1.81;ReadPosRankSum=-2.736;SNPEFF_AMINO_ACID_CHANGE=G1430R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113145601_113147824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409750    GT:AD:DP:GQ:PL    1/1:165,77:242:46.92:471,47,0
2    113147159    .    G    A    442.40    MQFilter40;QDFilter2    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=12.5;MQ0=114;MQRankSum=0.415;QD=1.77;ReadPosRankSum=0.195;SNPEFF_AMINO_ACID_CHANGE=P1121;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113145601_113147824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGPD8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302558    GT:AD:DP:GQ:PL    0/1:171,79:250:99:472,0,745
2    113300330    rs4849071    G    A    122.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263331    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
2    113304948    .    G    A    484.77    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=4.049;DP=38;Dels=0.0;FS=1.854;HRun=0;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;MQRankSum=-0.219;QD=12.76;ReadPosRankSum=-1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430769    GT:AD:DP:GQ:PL    0/1:20,18:38:99:515,0,547
2    113305150    rs11123139    G    C    921.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430769    GT:AD:DP:GQ:PL    1/1:0,28:28:75.22:954,75,0
2    113308516    rs2304555    T    A    2607.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_AMINO_ACID_CHANGE=T177;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113308443_113308579;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417433    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2641,190,0
2    113308622    rs3816140    C    T    2290.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.407;QD=35.79;ReadPosRankSum=-0.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424062    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2323,135,0
2    113308795    rs7568539    C    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424062    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    113309473    rs1545133    C    T    1789    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=S239L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113309352_113309575;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417433    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1822,138,0
2    113310197    rs35101761    CT    C    1004.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=12;HaplotypeScore=132.2955;IndelType=D;MQ=58.8;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424062    GT:AD:DP:GQ:PL    1/1:4,44:49:99:1047,136,0
2    113315735    rs71896075    CT    C    94.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=5;HaplotypeScore=16.4272;IndelType=D;MQ=62.13;MQ0=0;QD=18.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263331    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:136,12,0
2    113321900    rs41280572    T    C    1162.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=36.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498054    GT:AD:DP:GQ:PL    1/1:0,32:32:90.27:1196,90,0
2    113326281    rs6746874    C    G    565.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263331    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:599,45,0
2    113326502    rs13010814    C    T    782.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263331    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:816,60,0
2    113343488    rs3789722    A    T    569.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9265;MQ=57.29;MQ0=0;MQRankSum=1.583;QD=21.9;ReadPosRankSum=0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHCHD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324913    GT:AD:DP:GQ:PL    1/1:1,24:26:30.47:602,30,0
2    113344047    rs752992    T    C    62.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_AMINO_ACID_CHANGE=H138;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113343777_113346852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHCHD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409719    GT:AD:DP:GQ:PL    1/1:0,4:4:9:94,9,0
2    113346413    rs3748024    C    G    404.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.042;QD=26.96;ReadPosRankSum=1.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHCHD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489052    GT:AD:DP:GQ:PL    1/1:1,14:15:0.55:433,1,0
2    113346512    rs1047652    A    C    236.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.7465;MQ=57.87;MQ0=0;QD=21.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHCHD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489052    GT:AD:DP:GQ:PL    1/1:1,10:11:21.07:270,21,0
2    113379340    rs35496875    T    TG    1288.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=1;HaplotypeScore=62.9716;IndelType=I;MQ=60.3;MQ0=0;QD=42.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC079922.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443291    GT:AD:DP:GQ:PL    1/1:0,30:30:90.30:1331,90,0
2    113404708    rs4849091    G    A    1186.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.27;MQ0=0;QD=31.23;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113404140_113404739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC20A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272542    GT:AD:DP:GQ:PL    1/1:0,38:38:93.27:1220,93,0
2    113414986    rs3827758    A    G    251.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492076    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
2    113428008    rs10178142    G    T    606.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.94;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:640,48,0
2    113478889    rs2063918    A    G    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327581    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    113479614    rs13386452    G    A    162.82    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=9.58;ReadPosRankSum=0.144;SNPEFF_AMINO_ACID_CHANGE=R46H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113479563_113479680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327581    GT:AD:DP:GQ:PL    0/1:8,9:17:99:193,0,265
2    113479745    rs34781106    AC    A    212.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=21.0354;IndelType=D;MQ=61.34;MQ0=0;QD=26.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327581    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:255,24,0
2    113480491    rs10210602    T    C    32.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=16.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
2    113480556    rs34912983    GC    G    268.85    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=18;FS=0.0;HRun=4;HaplotypeScore=90.4347;IndelType=D;MQ=52.46;MQ0=0;MQRankSum=1.025;QD=14.94;ReadPosRankSum=1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484666    GT:AD:DP:GQ:PL    0/1:8,10:18:99:308,0,243
2    113480938    .    G    GCACACA    499.86    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=72.5023;IndelType=I;MQ=56.47;MQ0=0;QD=55.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484666    GT:AD:DP:GQ:PL    1/1:1,5:9:24.08:542,24,0
2    113481425    .    C    G    352.32    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DP=27;Dels=0.0;FS=1.69;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=13.05;ReadPosRankSum=-2.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484666    GT:AD:DP:GQ:PL    0/1:14,13:27:99:382,0,458
2    113481439    rs13384583    T    A    298.21    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.854;DB;DP=24;Dels=0.0;FS=3.388;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=12.43;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484666    GT:AD:DP:GQ:PL    0/1:13,11:24:99:328,0,457
2    113481547    rs2063919    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    113482779    rs4849116    A    C    467.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_AMINO_ACID_CHANGE=Y283S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113482751_113482817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327581    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:500,36,0
2    113484319    rs2138604    G    A    1531.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470675    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1564,117,0
2    113484353    rs2138605    A    G    1158.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470675    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1192,93,0
2    113484441    rs2138606    T    G    155.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=15.6;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470675    GT:AD:DP:GQ:PL    0/1:4,6:10:96.90:186,0,97
2    113498566    rs3811040    A    G    700.62    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=3.285;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.73;MQ0=0;MQRankSum=-0.934;QD=10.01;ReadPosRankSum=1.083;SNPEFF_AMINO_ACID_CHANGE=L449S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113498395_113498584;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541405    GT:AD:DP:GQ:PL    0/1:46,24:70:99:731,0,1446
2    113503830    rs6542088    C    T    222.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327581    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:255,21,0
2    113513504    rs4848298    A    G    675.83    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=53;Dels=0.0;FS=1.519;HRun=0;HaplotypeScore=0.9999;MQ=59.65;MQ0=0;MQRankSum=0.948;QD=12.75;ReadPosRankSum=0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461876    GT:AD:DP:GQ:PL    0/1:31,22:53:99:706,0,1052
2    113513825    rs6731822    T    C    2886.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.3968;MQ=59.73;MQ0=0;MQRankSum=2.131;QD=33.57;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=I210V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113513554_113514791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541405    GT:AD:DP:GQ:PL    1/1:2,84:86:99:2920,226,0
2    113514883    rs11311327    AT    A    356.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.48;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=63.5967;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=16.2;ReadPosRankSum=-0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302450    GT:AD:DP:GQ:PL    0/1:11,11:22:99:396,0,379
2    113532885    rs3783550    G    T    368.36    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.538;DB;DP=32;Dels=0.0;FS=7.364;HRun=1;HaplotypeScore=1.4942;MQ=59.28;MQ0=0;MQRankSum=0.817;QD=11.51;ReadPosRankSum=-0.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263339    GT:AD:DP:GQ:PL    0/1:18,14:32:99:398,0,640
2    113535395    rs2071376    G    T    144.28    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.61;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263339    GT:AD:DP:GQ:PL    0/1:1,6:7:23.18:174,0,23
2    113537352    rs2071374    T    G    36.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=9.04;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263339    GT:AD:DP:GQ:PL    0/1:2,2:4:30.98:66,0,31
2    113540205    rs1609682    G    T    137.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=10.54;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263339    GT:AD:DP:GQ:PL    0/1:7,5:13:99:167,0,252
2    113590467    rs1143633    C    T    97.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=8.09;ReadPosRankSum=-1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477398    GT:AD:DP:GQ:PL    0/1:8,4:12:99:127,0,260
2    113593518    rs1143629    G    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263341    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
2    113610950    .    T    TCATC    549.53    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.236;DP=34;FS=0.0;HRun=0;HaplotypeScore=142.0543;IndelType=I;MQ=61.57;MQ0=0;MQRankSum=1.175;QD=16.16;ReadPosRankSum=-0.503;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC079753.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312918    GT:AD:DP:GQ:PL    0/1:23,10:34:99:589,0,738
2    113671303    rs3811045    T    C    458.26    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.075;QD=9.55;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263326    GT:AD:DP:GQ:PL    0/1:26,22:48:99:488,0,867
2    113671378    rs3811046    G    T    498.75    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.716;DB;DP=59;Dels=0.0;FS=17.404;HRun=0;HaplotypeScore=4.7208;MQ=54.7;MQ0=0;MQRankSum=0.824;QD=8.45;ReadPosRankSum=-0.539;SNPEFF_AMINO_ACID_CHANGE=G31V;SNPEFF_CODON_CHANGE=gGa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113671369_113671431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263326    GT:AD:DP:GQ:PL    0/1:31,25:59:99:529,0,868
2    113671410    rs3811047    A    G    477.48    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.372;DB;DP=47;Dels=0.0;FS=9.347;HRun=0;HaplotypeScore=5.0802;MQ=52.71;MQ0=0;MQRankSum=-2.096;QD=10.16;ReadPosRankSum=0.394;SNPEFF_AMINO_ACID_CHANGE=T42A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113671369_113671431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263326    GT:AD:DP:GQ:PL    0/1:24,23:47:99:507,0,673
2    113671518    rs3811048    G    A    109.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.63;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263326    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,138
2    113675080    rs2723186    A    G    3840.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263326    GT:AD:DP:GQ:PL    1/1:0,120:120:99:3840,322,0
2    113675959    rs2723191    G    T    172.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263326    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
2    113742734    rs7584409    G    A    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259205    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    113763463    rs2305152    A    C    759.49    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.119;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.205;QD=12.45;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259211    GT:AD:DP:GQ:PL    0/1:33,28:61:99:789,0,992
2    113763575    rs895497    A    G    2014.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=59.29;MQ0=0;QD=30.99;SNPEFF_AMINO_ACID_CHANGE=Q12R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113763551_113763664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259211    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2047,162,0
2    113764419    rs28947168    T    C    172.22    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.122;QD=10.13;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259211    GT:AD:DP:GQ:PL    0/1:10,7:17:99:202,0,367
2    113783570    rs13030063    C    T    109.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.18;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327407    GT:AD:DP:GQ:PL    0/1:2,4:6:67.23:139,0,67
2    113783909    rs6744874    A    T    256.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327407    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
2    113785727    rs1562304    A    G    632.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259213    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:666,51,0
2    113785842    rs1006122    G    C    115.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259213    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
2    113786833    rs3948121    C    G    217.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259213    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
2    113788590    rs3752739    C    G    178.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.25;MQ0=0;MQRankSum=0.473;QD=11.17;ReadPosRankSum=-1.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259213    GT:AD:DP:GQ:PL    0/1:8,8:16:99:209,0,262
2    113789169    rs2305149    C    A    247.86    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.196;QD=16.52;ReadPosRankSum=-0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259213    GT:AD:DP:GQ:PL    0/1:4,11:15:99:278,0,117
2    113789316    rs2305150    C    T    460.21    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.905;DB;DP=41;Dels=0.0;FS=1.298;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=1.458;QD=11.22;ReadPosRankSum=1.432;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_113789274_113789343;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259213    GT:AD:DP:GQ:PL    0/1:23,18:41:99:490,0,658
2    113818632    rs2251872    G    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36RN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346807    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
2    113819614    rs2252007    T    C    169.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL36RN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346807    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
2    113830201    rs3811051    T    G    118.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1F10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337569    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:151,15,0
2    113832312    rs6761276    T    C    4224.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=59.82;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=I44T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113832214_113832427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1F10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337569    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4224,316,0
2    113832333    rs6743376    C    A    3129.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=A51D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113832214_113832427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1F10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337569    GT:AD:DP:GQ:PL    1/1:0,95:96:99:3162,247,0
2    113877495    rs928940    G    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL1RN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463073    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    113888900    rs380092    T    A    94.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL1RN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472292    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
2    113940681    rs3748914    T    C    780.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_AMINO_ACID_CHANGE=S216;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113939923_113941089;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245796    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:813,63,0
2    113940839    rs4849167    G    C    1351.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.58;SNPEFF_AMINO_ACID_CHANGE=G269A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113939923_113941089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245796    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1384,111,0
2    113942274    rs6761202    C    G    389.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465917    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:423,33,0
2    113942903    rs1975535    A    C    2666.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.42;MQ0=0;QD=33.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465917    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2700,199,0
2    113943470    rs2241976    A    G    359.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=G422;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113943454_113943832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245796    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:392,30,0
2    113953401    rs923693    A    G    1455.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=58.95;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245796    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1489,114,0
2    113953657    rs4849169    A    C    773.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245796    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:806,63,0
2    113953952    rs4848318    T    C    207.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=20.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245796    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:240,21,0
2    113953973    .    A    AT    178.66    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=65.9795;IndelType=I;MQ=37.32;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245796    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:220,15,0
2    113953974    rs62856760    GACA    G    218.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=65.6379;IndelType=D;MQ=37.32;MQ0=0;QD=43.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245796    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:260,15,0
2    113954879    rs902696    A    C    54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493329    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
2    113955074    rs902695    G    A    453.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=37.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493329    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:487,36,0
2    113956371    rs2276561    G    C    755.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=56.7;MQ0=0;QD=21.58;SNPEFF_AMINO_ACID_CHANGE=T864;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_113956317_113956461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441564    GT:AD:DP:GQ:PL    1/1:0,35:35:66.15:788,66,0
2    113994417    rs1110839    G    T    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467778    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    114000458    rs902691    C    A    276.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263334    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:310,24,0
2    114001921    rs13007173    A    G    383.56    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.673;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7273;MQ=58.54;MQ0=0;MQRankSum=0.604;QD=10.96;ReadPosRankSum=-1.846;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263334    GT:AD:DP:GQ:PL    0/1:19,16:35:99:414,0,578
2    114004237    rs11678394    G    A    980.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263334    GT:AD:DP:GQ:PL    1/1:0,30:30:78.22:1014,78,0
2    114020848    rs1466018    T    G    259.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263334    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:292,24,0
2    114196427    rs3877318    T    A    33.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.74;MQ0=0;QD=16.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259199    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
2    114210817    .    GT    G    247.72    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=4.259;DP=81;FS=3.829;HRun=11;HaplotypeScore=216.2265;IndelType=D;MQ=36.07;MQ0=15;MQRankSum=-3.512;QD=2.41;ReadPosRankSum=-1.526;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259199    GT:AD:DP:GQ:PL    0/1:65,38:81:99:287,0,1121
2    114210921    rs1212279    C    T    172.24    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.02;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.61;MQ0=0;MQRankSum=0.107;QD=8.2;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259199    GT:AD:DP:GQ:PL    0/1:12,9:21:99:202,0,254
2    114220055    rs1210133    T    C    2938.70    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DB;DP=211;Dels=0.0;FS=1.73;HRun=0;HaplotypeScore=1.9157;MQ=48.17;MQ0=5;MQRankSum=-0.552;QD=13.93;ReadPosRankSum=1.662;SNPEFF_AMINO_ACID_CHANGE=L180;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_114219985_114220071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433343    GT:AD:DP:GQ:PL    0/1:116,95:211:99:2969,0,3144
2    114242770    rs115309571    C    G    182.28    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.19;MQ0=0;MQRankSum=0.0;QD=18.23;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259199    GT:AD:DP:GQ:PL    0/1:2,8:10:57.16:212,0,57
2    114256759    rs2748031    A    G    155.16    MQFilter40    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.802;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.03;MQ0=3;MQRankSum=-2.01;QD=5.17;ReadPosRankSum=-0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259199    GT:AD:DP:GQ:PL    0/1:17,13:30:99:185,0,491
2    114256840    rs147906017    C    T    58.03    QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=0.853;DB;DP=41;Dels=0.0;FS=1.744;HRun=1;HaplotypeScore=0.0;MQ=41.19;MQ0=3;MQRankSum=-1.204;QD=1.42;ReadPosRankSum=-0.503;SNPEFF_AMINO_ACID_CHANGE=L3;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_114256661_114258728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306507    GT:AD:DP:GQ:PL    0/1:31,10:41:88.02:88,0,827
2    114299607    rs2441488    T    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.09;MQ0=0;QD=15.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL078621.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416105    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
2    114335753    rs145903458    T    G    734.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.32;MQ0=25;QD=13.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1302-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408128    GT:AD:DP:GQ:PL    1/1:1,53:54:72.15:768,72,0
2    114340628    rs7589328    C    T    567.53    MQFilter40    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=1.424;DB;DP=200;Dels=0.0;FS=3.71;HRun=0;HaplotypeScore=4.3874;MQ=36.76;MQ0=10;MQRankSum=-7.763;QD=2.84;ReadPosRankSum=2.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM138B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432583    GT:AD:DP:GQ:PL    0/1:134,61:200:99:598,0,3371
2    114340663    rs6542147    G    A    1090.46    MQFilter40;MQRankSumFilter12_5    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.787;DB;DP=250;DS;Dels=0.0;FS=20.911;HRun=1;HaplotypeScore=2.545;MQ=36.6;MQ0=20;MQRankSum=-12.539;QD=4.36;ReadPosRankSum=-2.486;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM138B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432583    GT:AD:DP:GQ:PL    0/1:107,141:250:99:1120,0,3124
2    114340677    rs6542148    C    A    804.69    MQFilter40    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.53;DB;DP=248;DS;Dels=0.0;FS=28.929;HRun=0;HaplotypeScore=0.9967;MQ=37.88;MQ0=24;MQRankSum=-11.218;QD=3.24;ReadPosRankSum=-2.611;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM138B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432583    GT:AD:DP:GQ:PL    0/1:129,119:248:99:835,0,3219
2    114340706    rs2258969    A    G    307.67    MQFilter40;QDFilter2    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.604;DB;DP=231;DS;Dels=0.0;FS=21.819;HRun=1;HaplotypeScore=6.0211;MQ=39.92;MQ0=32;MQRankSum=-11.857;QD=1.33;ReadPosRankSum=1.629;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM138B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432583    GT:AD:DP:GQ:PL    0/1:111,119:231:99:338,0,3426
2    114340787    .    A    ATTTAACTTT    317.70    PASS    AB=0.906;AC=1;AF=0.50;AN=2;BaseQRankSum=1.375;DP=54;FS=0.0;HRun=0;HaplotypeScore=410.9286;IndelType=I;MQ=32.89;MQ0=10;MQRankSum=-1.056;QD=3.31;ReadPosRankSum=-1.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM138B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432583    GT:AD:DP:GQ:PL    0/1:86,10:54:99:357,0,2769
2    114346484    rs150805232    C    T    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.54;MQ0=49;QD=0.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    1/1:42,22:64:6.02:67,6,0
2    114346531    rs141249577    A    G    77.60    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.8;MQ0=35;QD=1.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    1/1:28,31:59:9.03:110,9,0
2    114346567    rs138297005    G    A    158.94    MQFilter40    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.337;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.66;MQ0=13;MQRankSum=0.774;QD=3.7;ReadPosRankSum=1.102;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    0/1:18,25:43:19.36:189,0,19
2    114346582    rs144421816    A    G    266.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.5;MQ0=5;QD=8.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    1/1:3,29:32:29.92:300,30,0
2    114350105    rs112946271    T    G    31.47    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=0.727;QD=7.87;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:61,0,31
2    114350207    rs75441364    T    C    208.51    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.489;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=38.1;MQ0=0;MQRankSum=-2.088;QD=11.58;ReadPosRankSum=0.666;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    0/1:10,8:18:99:239,0,337
2    114350216    rs78153617    T    G    220.39    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=38.1;MQ0=0;MQRankSum=0.489;QD=12.24;ReadPosRankSum=-1.111;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    0/1:10,8:18:99:250,0,334
2    114350224    rs78363704    C    A    158.38    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=38.1;MQ0=0;MQRankSum=-1.122;QD=8.8;ReadPosRankSum=-2.586;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    0/1:10,8:18:99:188,0,352
2    114350276    rs142013443    G    A    401.30    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.773;DB;DP=45;Dels=0.0;FS=33.103;HRun=0;HaplotypeScore=0.0;MQ=23.29;MQ0=22;MQRankSum=1.771;QD=8.92;ReadPosRankSum=0.501;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    0/1:27,18:45:99:431,0,180
2    114350291    rs149240733    G    A    143    MQFilter40    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.033;DB;DP=52;Dels=0.0;FS=28.709;HRun=0;HaplotypeScore=0.0;MQ=21.16;MQ0=29;MQRankSum=-2.439;QD=2.75;ReadPosRankSum=1.303;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326632    GT:AD:DP:GQ:PL    0/1:37,15:52:99:173,0,458
2    114352071    rs116197531    T    C    417.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=26.26;MQ0=1;QD=21.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437401    GT:AD:DP:GQ:PL    1/1:0,19:19:42.10:451,42,0
2    114352638    .    A    G    36.18    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.256;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=6.7;MQ0=57;MQRankSum=2.041;QD=0.52;ReadPosRankSum=-2.041;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000538033    GT:AD:DP:GQ:PL    1/1:61,9:70:6.02:67,6,0
2    114352806    rs2974807    T    C    40.79    MQFilter40;QDFilter2    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.6892;MQ=22.81;MQ0=0;MQRankSum=-1.725;QD=0.99;ReadPosRankSum=0.759;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437401    GT:AD:DP:GQ:PL    0/1:25,16:41:70.78:71,0,470
2    114352820    rs4499433    C    T    75.42    MQFilter40    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=24.06;MQ0=0;MQRankSum=-0.495;QD=2.15;ReadPosRankSum=1.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437401    GT:AD:DP:GQ:PL    0/1:22,13:35:99:105,0,410
2    114353282    .    G    T    288.54    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.708;DP=160;Dels=0.0;FS=1.958;HRun=0;HaplotypeScore=18.9809;MQ=21.08;MQ0=36;MQRankSum=-1.826;QD=1.8;ReadPosRankSum=0.516;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=WASH2P;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000542901    GT:AD:DP:GQ:PL    0/1:120,40:160:99:319,0,1727
2    114353296    rs6749445    C    T    626.88    HaplotypeScoreFilter13;MQFilter40    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=4.022;DB;DP=170;Dels=0.0;FS=1.994;HRun=0;HaplotypeScore=17.1237;MQ=20.72;MQ0=36;MQRankSum=-3.342;QD=3.69;ReadPosRankSum=1.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437401    GT:AD:DP:GQ:PL    0/1:101,69:170:99:657,0,1288
2    114353351    rs11691138    C    T    1118.03    MQFilter40    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.824;DB;DP=123;Dels=0.0;FS=3.071;HRun=2;HaplotypeScore=0.8321;MQ=28.19;MQ0=32;MQRankSum=6.873;QD=9.09;ReadPosRankSum=1.108;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437401    GT:AD:DP:GQ:PL    0/1:66,57:123:99:1148,0,223
2    114353635    .    A    G    376.47    MQFilter40    AC=2;AF=1.00;AN=2;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.35;MQ0=4;QD=19.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437401    GT:AD:DP:GQ:PL    1/1:0,19:19:36.10:409,36,0
2    114356059    rs143600323    G    A    808.74    MQFilter40    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.167;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8732;MQ=24.15;MQ0=12;MQRankSum=3.588;QD=11.55;ReadPosRankSum=1.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437401    GT:AD:DP:GQ:PL    0/1:32,38:70:99:839,0,134
2    114356302    .    T    C    96.46    MQFilter40    AC=2;AF=1.00;AN=2;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.94;MQ0=11;QD=4.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437401    GT:AD:DP:GQ:PL    1/1:0,20:20:12.03:129,12,0
2    114369579    .    T    C    33.98    MQFilter40;QDFilter2    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=7.98;MQ0=89;MQRankSum=-0.853;QD=0.31;ReadPosRankSum=0.853;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL078621.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391616    GT:AD:DP:GQ:PL    0/1:85,26:111:63.97:64,0,174
2    114369771    rs145906086    C    T    975.97    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.027;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6643;MQ=18.35;MQ0=23;MQRankSum=2.074;QD=13.94;ReadPosRankSum=-0.835;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL078621.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391616    GT:AD:DP:GQ:PL    1/1:10,60:70:98.95:1009,99,0
2    114399145    rs114994309    G    A    3013.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=42.56;MQ0=2;QD=33.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABL2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413545    GT:AD:DP:GQ:PL    1/1:2,87:89:99:3047,235,0
2    114416075    rs13385882    G    T    1058.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=23.43;MQ0=18;QD=19.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-395L14.17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272567    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1092,99,0
2    114416091    rs13425227    A    G    1036.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.04;MQ0=15;QD=20.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-395L14.17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272567    GT:AD:DP:GQ:PL    1/1:0,51:51:96.25:1069,96,0
2    114424974    rs145844216    T    G    701.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.83;MQ0=18;QD=14.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL078621.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419351    GT:AD:DP:GQ:PL    1/1:7,40:47:78.08:735,78,0
2    114425425    rs145764632    C    A    548.38    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7359;MQ=27.82;MQ0=4;QD=17.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL078621.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419351    GT:AD:DP:GQ:PL    1/1:2,30:32:51.08:581,51,0
2    114425685    rs11682527    G    T    176.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.23;MQ0=0;QD=22.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL078621.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419351    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:209,15,0
2    114425697    rs145623386    CCA    C    223.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=43.6053;IndelType=D;MQ=52.19;MQ0=0;QD=31.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL078621.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419351    GT:AD:DP:GQ:PL    1/1:0,7:6:18.06:265,18,0
2    114426115    rs80314553    T    C    2505.55    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.807;DB;DP=109;Dels=0.0;FS=4.414;HRun=0;HaplotypeScore=0.0;MQ=34.23;MQ0=17;MQRankSum=-1.711;QD=22.99;ReadPosRankSum=-0.753;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AL078621.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419351    GT:AD:DP:GQ:PL    1/1:2,107:109:99:2539,151,0
2    114475652    rs2122096    C    G    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    114476582    rs6741521    C    A    273.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485214    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:306,24,0
2    114480812    rs3835109    A    AAAC    2296.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=117.6042;IndelType=I;MQ=49.12;MQ0=0;QD=65.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:2,33:35:99:2338,105,0
2    114486880    rs3841578    GA    G    122.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=9;HaplotypeScore=42.9364;IndelType=D;MQ=60.0;MQ0=0;QD=20.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,6:6:18.01:165,18,0
2    114486907    rs4849269    T    C    517    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:550,42,0
2    114491115    rs17683666    A    G    118.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
2    114492135    rs2305254    C    T    585.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,19:19:51.11:619,51,0
2    114493221    rs10172842    G    A    212.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
2    114493524    rs10199704    C    T    240.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
2    114500131    rs13004622    C    A    337.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460863    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:370,27,0
2    114501242    rs3748907    T    C    4119.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,117:117:99:4119,310,0
2    114513386    rs7578249    C    T    451.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC35F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245680    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:485,36,0
2    115822286    rs1509742    T    G    87.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=8.72;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409163    GT:AD:DP:GQ:PL    0/1:5,5:10:99:117,0,148
2    116066984    rs975453    G    A    2615.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DB;DP=77;Dels=0.0;FS=6.709;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=-1.014;QD=33.97;ReadPosRankSum=-1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310323    GT:AD:DP:GQ:PL    1/1:3,74:77:99:2649,181,0
2    116283668    rs984066    G    A    103.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=14.81;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419287    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,105
2    116497479    rs1550854    A    G    1694.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393146    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1728,126,0
2    116497528    rs1550853    A    G    1070.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393146    GT:AD:DP:GQ:PL    1/1:0,29:29:87.24:1104,87,0
2    116510817    rs2053724    G    C    534.26    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.441;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.944;QD=12.72;ReadPosRankSum=0.516;SNPEFF_AMINO_ACID_CHANGE=A290P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_116510750_116510873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409163    GT:AD:DP:GQ:PL    0/1:20,22:42:99:564,0,644
2    116525960    rs1446495    G    A    1052.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_AMINO_ACID_CHANGE=V351I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_116525873_116525980;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409163    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1086,81,0
2    116539846    rs36082071    GA    G    292.74    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.308;DB;DP=26;FS=0.0;HRun=6;HaplotypeScore=59.7784;IndelType=D;MQ=61.24;MQ0=0;MQRankSum=0.615;QD=11.26;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310323    GT:AD:DP:GQ:PL    0/1:13,13:26:99:332,0,422
2    116548526    rs6735355    A    G    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310323    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    116548820    rs3738879    C    T    2172.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310323    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2206,168,0
2    116593675    rs113011508    ATG    A    141.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=26.1689;IndelType=D;MQ=58.69;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310323    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
2    116598546    rs272011    G    A    72.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473362    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:104,9,0
2    116599659    rs272010    A    T    170.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310323    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
2    116599927    rs272009    T    C    824.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393147    GT:AD:DP:GQ:PL    1/1:0,24:24:72.20:857,72,0
2    118572471    rs3755492    A    C    802.15    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.862;DB;DP=44;Dels=0.0;FS=1.729;HRun=3;HaplotypeScore=0.7887;MQ=59.48;MQ0=0;MQRankSum=-0.583;QD=18.23;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263239    GT:AD:DP:GQ:PL    0/1:18,26:44:99:832,0,356
2    118575215    rs1052637    C    G    3016.46    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=158;Dels=0.0;FS=6.037;HRun=0;HaplotypeScore=4.8093;MQ=59.03;MQ0=0;MQRankSum=-0.311;QD=19.09;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=T94S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_118575020_118575304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263239    GT:AD:DP:GQ:PL    0/1:59,99:158:99:3046,0,1771
2    118575468    rs6737733    C    T    167.65    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.272;QD=9.31;ReadPosRankSum=-0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263239    GT:AD:DP:GQ:PL    0/1:11,7:18:99:198,0,344
2    118578691    rs34364967    TA    T    506.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=9;HaplotypeScore=48.3983;IndelType=D;MQ=61.07;MQ0=0;QD=25.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263239    GT:AD:DP:GQ:PL    1/1:0,20:20:60.03:548,60,0
2    118582936    rs112417042    A    ATAAAG    1810.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=73.7097;IndelType=I;MQ=47.99;MQ0=0;QD=82.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474694    GT:AD:DP:GQ:PL    1/1:1,19:22:60.21:1852,60,0
2    118583940    rs2303348    C    T    239.77    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.03;MQ0=0;MQRankSum=-0.263;QD=9.99;ReadPosRankSum=0.556;SNPEFF_AMINO_ACID_CHANGE=R203;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_118583845_118583958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415038    GT:AD:DP:GQ:PL    0/1:14,10:24:99:270,0,391
2    118688754    rs971754    T    C    2158.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470650    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2191,181,0
2    118694393    rs2303333    C    G    607.45    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.294;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-2.114;QD=15.99;ReadPosRankSum=-1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    0/1:17,21:38:99:637,0,581
2    118698699    rs2303330    A    G    185.23    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=10.29;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    0/1:10,8:18:99:215,0,363
2    118704478    rs7580124    T    G    937.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=28.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460781    GT:AD:DP:GQ:PL    1/1:0,33:33:75.23:971,75,0
2    118704503    rs2303329    A    G    331.31    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=23;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.446;QD=14.4;ReadPosRankSum=0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460781    GT:AD:DP:GQ:PL    0/1:11,12:23:99:361,0,376
2    118705570    rs10186396    A    G    1501.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460781    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1535,132,0
2    118706879    rs1035598    A    G    1924.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460781    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1958,150,0
2    118716166    rs1991102    C    T    144.66    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.034;QD=13.15;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    0/1:4,7:11:99:175,0,128
2    118731573    rs748767    G    A    143.01    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.361;QD=14.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    0/1:4,6:10:97.13:173,0,97
2    118732975    rs6722547    T    C    502.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:535,42,0
2    118753097    rs17584619    C    T    1018.78    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=4.428;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.44;MQ0=0;MQRankSum=2.377;QD=13.77;ReadPosRankSum=0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    0/1:41,33:74:99:1049,0,1044
2    118753148    rs10633675    A    ATC    1642.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=110.9899;IndelType=I;MQ=61.43;MQ0=0;QD=54.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    1/1:0,30:30:90.31:1685,90,0
2    118753149    .    T    C    45.87    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.037;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.43;MQ0=0;MQRankSum=2.286;QD=1.53;ReadPosRankSum=-2.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    1/1:28,2:30:6.02:77,6,0
2    118758210    rs1559504    A    G    111.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:144,12,0
2    118764527    rs4849654    T    A    125.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
2    118766024    rs10864966    A    G    808.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    1/1:1,23:24:66.20:842,66,0
2    118771663    rs12477588    A    G    121.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.43;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_118771530_118771709;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319432    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
2    119732042    rs11693199    T    C    70.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=6.43;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412481    GT:AD:DP:GQ:PL    0/1:6,5:11:99:101,0,210
2    119739269    rs56216274    C    T    1395.64    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=5.054;DB;DP=94;Dels=0.0;FS=4.225;HRun=0;HaplotypeScore=0.5784;MQ=57.81;MQ0=0;MQRankSum=0.765;QD=14.85;ReadPosRankSum=-0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327097    GT:AD:DP:GQ:PL    0/1:48,46:94:99:1426,0,1161
2    119748135    rs34563870    TC    T    287.35    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.169;DB;DP=46;FS=0.0;HRun=10;HaplotypeScore=226.2482;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=0.606;QD=6.25;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327097    GT:AD:DP:GQ:PL    0/1:27,18:46:99:326,0,581
2    119749477    rs2304708    T    G    94.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327097    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:127,9,0
2    119749858    rs3765035    A    G    129.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327097    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:162,15,0
2    119751867    rs11678719    C    T    224.85    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;MQRankSum=-1.769;QD=20.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327097    GT:AD:DP:GQ:PL    0/1:4,7:11:99:255,0,133
2    119915249    rs7556873    T    C    269.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=24.5;ReadPosRankSum=-0.474;SNPEFF_AMINO_ACID_CHANGE=V199;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_119915162_119916465;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272520    GT:AD:DP:GQ:PL    1/1:1,10:11:4.39:300,4,0
2    119988565    rs838100    G    A    1308.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393106    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1341,102,0
2    120003642    rs838083    C    T    615.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354888    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:649,54,0
2    120005840    rs67985074    TC    T    284.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=43.4024;IndelType=D;MQ=60.72;MQ0=0;QD=19.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354888    GT:AD:DP:GQ:PL    1/1:6,9:15:36.02:327,36,0
2    120014985    rs838072    A    G    824.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354888    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:857,63,0
2    120059895    rs16744    G    GGAAA    508.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=19.0219;IndelType=I;MQ=35.14;MQ0=0;QD=72.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409523    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:550,21,0
2    120059988    rs1890    T    C    855.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=35.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409523    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:888,66,0
2    120060082    rs1052500    T    C    1194.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=K116R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120059804_120060124;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf76;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334816    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1228,93,0
2    120078778    rs6542522    T    C    1600.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=I46V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120078730_120078780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf76;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334816    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1633,120,0
2    120123941    .    G    T    37.15    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-0.761;QD=2.86;ReadPosRankSum=2.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334816    GT:AD:DP:GQ:PL    0/1:10,3:13:67.14:67,0,346
2    120125029    rs2084202    A    G    410.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=R20;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120124979_120125104;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535617    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:443,36,0
2    120125053    rs3731608    C    G    470.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=31.36;SNPEFF_AMINO_ACID_CHANGE=Y28*;SNPEFF_CODON_CHANGE=taC/taG;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_2_120124979_120125104;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000535617    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:503,42,0
2    120125058    rs3731607    C    T    502.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.9;SNPEFF_AMINO_ACID_CHANGE=A30V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120124979_120125104;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535617    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:535,45,0
2    120125363    rs3091405    C    A    712.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311521    GT:AD:DP:GQ:PL    1/1:1,20:21:57.17:746,57,0
2    120125384    rs3091406    G    A    956.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=35.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311521    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:989,75,0
2    120125689    rs8192503    A    T    2559.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.031;DB;DP=74;Dels=0.0;FS=10.165;HRun=1;HaplotypeScore=0.9734;MQ=59.38;MQ0=0;MQRankSum=-0.152;QD=34.58;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311521    GT:AD:DP:GQ:PL    1/1:2,72:74:99:2592,119,0
2    120125910    rs2276596    C    A    1192.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311521    GT:AD:DP:GQ:PL    1/1:0,33:33:90.30:1225,90,0
2    120125936    rs2244135    T    C    979.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311521    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1012,75,0
2    120128482    rs956309    C    T    277.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492375    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:310,24,0
2    120129841    rs8192506    A    G    887.69    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.942;DB;DP=67;Dels=0.0;FS=2.074;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=13.25;ReadPosRankSum=0.196;SNPEFF_AMINO_ACID_CHANGE=M113V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120129821_120130116;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535617    GT:AD:DP:GQ:PL    0/1:29,38:67:99:918,0,896
2    120187344    rs11123523    A    G    113.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306406    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:146,12,0
2    120194651    rs3217464    A    AGTGTGC    6365.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=0;HaplotypeScore=247.1653;IndelType=I;MQ=36.16;MQ0=0;QD=109.76;SNPEFF_AMINO_ACID_CHANGE=T70SVP;SNPEFF_CODON_CHANGE=acg/aGTGTGCcg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_2_120194465_120196096;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306406    GT:AD:DP:GQ:PL    1/1:10,40:58:99:6366,175,0
2    120195182    rs2278565    C    G    150.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:184,15,0
2    120197670    rs1042656    G    A    69.93    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=7.77;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306406    GT:AD:DP:GQ:PL    0/1:5,4:9:99:100,0,163
2    120199140    rs1530100    A    G    570.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=N392;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120199134_120199175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:604,45,0
2    120204123    rs59283690    T    C    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    120204617    rs6748349    G    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    120204630    rs2276595    T    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    120209689    rs2587692    A    G    238.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
2    120219690    rs893610    C    T    80.31    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.08;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    0/1:1,3:4:18.55:110,0,19
2    120221481    rs2253872    T    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:84,6,0
2    120221585    rs2253870    G    A    178.64    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=16.24;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    0/1:5,6:11:99:209,0,174
2    120221861    rs57757577    G    A    181.54    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.213;DB;DP=30;Dels=0.0;FS=2.674;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.131;QD=6.05;ReadPosRankSum=-0.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    0/1:21,9:30:99:212,0,699
2    120221984    rs2579647    A    C    63.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:95,9,0
2    120230901    rs2579640    C    T    129.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
2    120230998    rs2579641    G    A    370.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:403,30,0
2    120231165    rs2587701    T    C    744.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:778,63,0
2    120236332    rs41279776    A    C    125.22    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=11.38;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019103    GT:AD:DP:GQ:PL    0/1:5,6:11:99:155,0,175
2    120362407    rs1568540    C    T    2018.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475569    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2052,156,0
2    120362897    rs1521914    T    A    771.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475569    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:805,63,0
2    120366057    rs11398750    G    GT    1683.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.348;DB;DP=79;FS=0.0;HRun=12;HaplotypeScore=298.5482;IndelType=I;MQ=57.36;MQ0=0;MQRankSum=-0.129;QD=21.31;ReadPosRankSum=0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475569    GT:AD:DP:GQ:PL    1/1:13,60:79:68.18:1725,68,0
2    120369300    rs10864986    T    C    984.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_AMINO_ACID_CHANGE=V145;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120369229_120369318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    1/1:0,34:34:78.25:1017,78,0
2    120385094    rs72249539    GATATAT    G    334.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=106.2961;IndelType=D;MQ=45.07;MQ0=0;MQRankSum=0.747;QD=22.33;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    1/1:7,6:15:19.62:377,20,0
2    120387637    rs12711931    G    C    280.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
2    120387640    rs2272056    T    C    63.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.13;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    0/1:4,3:7:93.88:94,0,137
2    120388412    rs2272058    G    A    3416.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8533;MQ=59.52;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=V351I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120388343_120388477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3416,256,0
2    120395657    rs939770    A    G    121.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
2    120396174    rs939771    C    T    84.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
2    120404629    rs138582717    AT    A    319.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.164;DB;DP=40;FS=4.031;HRun=14;HaplotypeScore=194.9029;IndelType=D;MQ=57.66;MQ0=0;MQRankSum=1.473;QD=7.99;ReadPosRankSum=1.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    1/1:15,24:40:11.53:361,12,0
2    120409430    rs1521912    A    G    124.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295220    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
2    120414083    rs6761357    C    T    510.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069154.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464578    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:543,39,0
2    120438523    rs13011768    A    G    1727.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=I32V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120438408_120439694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272521    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1760,132,0
2    120438696    rs939777    A    G    7593.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=226;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9627;MQ=59.69;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=Q89;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120438408_120439694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM177;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272521    GT:AD:DP:GQ:PL    1/1:0,226:226:99:7593,563,0
2    120439230    rs1983406    C    G    1494.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_AMINO_ACID_CHANGE=D234E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120439135_120439242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415646    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1527,117,0
2    120439459    rs4849797    C    A    534.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415646    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:568,42,0
2    120443014    rs2177095    T    C    81.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272521    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    120443443    rs939778    A    G    747.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272521    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:781,57,0
2    120634767    rs60021522    A    AT    214.84    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.16;DB;DP=25;FS=0.0;HRun=7;HaplotypeScore=52.8808;IndelType=I;MQ=60.43;MQ0=0;MQRankSum=-1.133;QD=8.59;ReadPosRankSum=-1.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263708    GT:AD:DP:GQ:PL    0/1:16,9:25:99:254,0,361
2    120635205    rs3768914    G    A    246.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.555;QD=13.7;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263708    GT:AD:DP:GQ:PL    0/1:10,8:18:99:277,0,356
2    120643280    rs74866537    G    GT    497.47    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.538;DB;DP=38;FS=0.0;HRun=6;HaplotypeScore=85.2419;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.875;QD=13.09;ReadPosRankSum=0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485247    GT:AD:DP:GQ:PL    0/1:21,17:38:99:537,0,446
2    120658143    rs3106241    G    T    37.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.47;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263708    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,110
2    120703842    rs2289581    A    G    279.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.949;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.282;QD=10.73;ReadPosRankSum=0.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263708    GT:AD:DP:GQ:PL    0/1:13,13:26:99:309,0,477
2    120704164    rs3214717    A    AT    987.90    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=6.669;DB;DP=80;FS=0.0;HRun=1;HaplotypeScore=320.7111;IndelType=I;MQ=60.25;MQ0=0;MQRankSum=1.295;QD=12.35;ReadPosRankSum=0.086;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_120704094_120704246;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000431283    GT:AD:DP:GQ:PL    0/1:48,32:80:99:1027,0,1543
2    120714401    rs76723123    CT    C    33.96    QDFilter2    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.488;DB;DP=107;FS=7.371;HRun=16;HaplotypeScore=700.8337;IndelType=D;MQ=52.99;MQ0=0;MQRankSum=-0.813;QD=0.32;ReadPosRankSum=1.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263708    GT:AD:DP:GQ:PL    0/1:69,29:107:72.99:73,0,724
2    120718322    rs12618050    A    G    450.28    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.254;DB;DP=36;Dels=0.0;FS=2.27;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.444;QD=12.51;ReadPosRankSum=-0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263708    GT:AD:DP:GQ:PL    0/1:19,17:36:99:480,0,645
2    120718672    rs6737776    T    G    236.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263708    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:269,21,0
2    120725704    rs10194955    A    G    212.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469511    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
2    120734737    rs3832049    C    CA    571    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.85;DB;DP=47;FS=3.575;HRun=10;HaplotypeScore=116.1917;IndelType=I;MQ=60.3;MQ0=0;MQRankSum=0.985;QD=12.15;ReadPosRankSum=-0.328;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263708    GT:AD:DP:GQ:PL    0/1:23,23:47:99:610,0,302
2    120776972    rs3216703    TG    T    332.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.657;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=40.9295;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.054;QD=20.79;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263713    GT:AD:DP:GQ:PL    0/1:6,10:16:99:372,0,240
2    120830815    rs3738970    A    G    882.26    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=67;Dels=0.0;FS=2.143;HRun=0;HaplotypeScore=0.9469;MQ=59.86;MQ0=0;MQRankSum=1.387;QD=13.17;ReadPosRankSum=0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263713    GT:AD:DP:GQ:PL    0/1:35,32:67:99:912,0,1084
2    120851010    rs1599893    G    T    420.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263713    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
2    120885310    rs1034489    G    A    1123.35    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.1;DB;DP=90;Dels=0.0;FS=2.741;HRun=2;HaplotypeScore=1.9862;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=12.48;ReadPosRankSum=0.166;SNPEFF_AMINO_ACID_CHANGE=A462T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_120885264_120885427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263713    GT:AD:DP:GQ:PL    0/1:50,40:90:99:1153,0,1568
2    120889173    rs3738968    G    C    780.35    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.294;DB;DP=56;Dels=0.02;FS=1.301;HRun=2;HaplotypeScore=4.9642;MQ=57.98;MQ0=0;MQRankSum=-0.84;QD=13.45;ReadPosRankSum=0.407;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461128    GT:AD:DP:GQ:PL    0/1:26,29:56:99:810,0,864
2    120900405    rs11123544    G    A    116.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263713    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
2    120900736    rs75582263    T    C    570.14    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.699;DB;DP=51;Dels=0.0;FS=2.512;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.019;QD=11.18;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263713    GT:AD:DP:GQ:PL    0/1:24,27:51:99:600,0,716
2    120918585    rs12617570    A    C    783.42    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=57;Dels=0.0;FS=1.514;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.062;QD=13.74;ReadPosRankSum=0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263713    GT:AD:DP:GQ:PL    0/1:28,29:57:99:813,0,1005
2    120918726    rs7584816    T    C    134.23    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263713    GT:AD:DP:GQ:PL    0/1:1,5:6:17.20:164,0,17
2    121036333    rs11545293    G    A    577.78    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.321;DB;DP=53;Dels=0.0;FS=1.109;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.064;QD=10.9;ReadPosRankSum=1.074;SNPEFF_AMINO_ACID_CHANGE=T31;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_121036194_121036354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272519    GT:AD:DP:GQ:PL    0/1:28,25:53:99:608,0,813
2    121036385    rs62168280    T    G    314.57    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=41;Dels=0.0;FS=1.681;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.095;QD=7.67;ReadPosRankSum=-0.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272519    GT:AD:DP:GQ:PL    0/1:23,18:41:99:345,0,683
2    121036386    rs12711940    T    A    313.52    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.651;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.15;QD=7.65;ReadPosRankSum=-0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272519    GT:AD:DP:GQ:PL    0/1:22,18:40:99:344,0,688
2    121043403    rs4091515    G    A    235.53    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.804;DB;DP=26;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.582;QD=9.06;ReadPosRankSum=0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272519    GT:AD:DP:GQ:PL    0/1:16,10:26:99:266,0,552
2    121050560    rs2278505    A    G    81.49    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.37;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412383    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:111,0,30
2    121708663    rs10864866    A    G    195.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:229,21,0
2    121709091    rs11681136    G    A    243.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482119    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
2    121713022    rs6718382    C    G    226.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472722    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:259,21,0
2    121713030    rs12614482    G    A    189.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472722    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:223,18,0
2    121713041    rs12617878    T    C    131.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472722    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
2    121726447    rs2592595    G    A    1496.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=G130S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_121726290_121726491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360874    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1529,117,0
2    121727842    rs1867906    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    121729360    rs2592592    T    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360874    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
2    121729490    rs2592591    C    T    1210.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.39;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360874    GT:AD:DP:GQ:PL    1/1:0,38:38:93.28:1244,93,0
2    121729686    rs2592590    T    C    475.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360874    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:509,39,0
2    121730138    rs3106962    C    G    905.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360874    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:939,72,0
2    121730478    rs280201    G    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360874    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
2    121732355    rs3835754    AGT    A    184.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=34.9157;IndelType=D;MQ=57.05;MQ0=0;QD=23.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360874    GT:AD:DP:GQ:PL    1/1:1,6:8:20.89:226,21,0
2    121740190    rs1968619    C    T    419.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:452,36,0
2    121740194    rs1530580    T    G    387.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:420,36,0
2    121740220    rs113032961    G    A    204.52    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.069;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.78;MQ0=0;MQRankSum=-1.01;QD=10.76;ReadPosRankSum=-2.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    0/1:11,8:19:99:235,0,254
2    121740493    rs41279790    G    A    493.17    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.36;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=0.021;QD=15.41;ReadPosRankSum=-1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    0/1:13,19:32:99:523,0,364
2    121740505    rs280196    C    T    872.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.36;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    1/1:1,26:29:66.22:906,66,0
2    121740609    rs72293080    CTT    C    325.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=68.9802;IndelType=D;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:368,24,0
2    121741811    rs3820720    C    T    139.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    1/1:0,9:9:15.04:172,15,0
2    121741843    rs3820719    A    G    575    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314490    GT:AD:DP:GQ:PL    1/1:0,24:24:54.13:608,54,0
2    121744225    rs2276553    A    G    668.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435313    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:701,54,0
2    121746956    rs3738880    G    T    596.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=A1156S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_121745784_121750228;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361492    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:630,48,0
2    121747406    rs12711538    G    A    386.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=D1306N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_121745784_121750228;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361492    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:420,33,0
2    121747429    rs10167980    A    G    428.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.73;SNPEFF_AMINO_ACID_CHANGE=P1313;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_121745784_121750228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361492    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:462,36,0
2    121792609    rs2592607    T    G    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC016764.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408394    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    121792804    rs145169658    TTTG    T    6151.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;FS=0.0;HRun=0;HaplotypeScore=617.5643;IndelType=D;MQ=60.25;MQ0=0;QD=44.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC016764.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408394    GT:AD:DP:GQ:PL    1/1:6,133:139:99:6151,397,0
2    121793137    rs2677538    T    C    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC016764.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408394    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
2    121981950    rs11890430    A    G    176.49    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.001;QD=11.77;ReadPosRankSum=0.839;SNPEFF_AMINO_ACID_CHANGE=D22;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_121981167_121981963;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537910    GT:AD:DP:GQ:PL    0/1:8,7:15:99:206,0,219
2    121982011    rs4384798    T    A    40.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.07;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263707    GT:AD:DP:GQ:PL    0/1:2,3:5:67.92:70,0,68
2    121989489    rs2304667    G    A    751.53    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=52;Dels=0.0;FS=1.145;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.25;QD=14.45;ReadPosRankSum=0.99;SNPEFF_AMINO_ACID_CHANGE=I418;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_121989402_121989544;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263707    GT:AD:DP:GQ:PL    0/1:24,28:52:99:782,0,602
2    121997330    rs11692478    C    G    62.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.94;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263707    GT:AD:DP:GQ:PL    0/1:4,3:7:92.61:93,0,136
2    122004596    rs2252862    C    G    213.98    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=17;Dels=0.0;FS=6.864;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.491;QD=12.59;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263707    GT:AD:DP:GQ:PL    0/1:8,9:17:99:244,0,272
2    122006700    rs7562700    G    C    54.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9889;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=7.82;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263707    GT:AD:DP:GQ:PL    0/1:3,4:7:84.73:85,0,94
2    122042759    rs140736460    C    T    77.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.46;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_122042624_122042783;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263707    GT:AD:DP:GQ:PL    0/1:1,3:4:20.46:108,0,20
2    124439681    rs2670606    A    G    463.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092646.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408762    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:496,39,0
2    124979469    rs75221672    C    T    352.57    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.092;QD=15.33;ReadPosRankSum=1.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    0/1:11,12:23:99:383,0,344
2    125192068    rs1425745    T    C    2897.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=37.14;SNPEFF_AMINO_ACID_CHANGE=D179;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_125192061_125192264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2930,223,0
2    125204192    rs61231472    A    G    187.64    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=14.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    0/1:5,8:13:99:218,0,163
2    125232609    rs4411700    G    T    169.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.388;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=12.13;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    0/1:8,6:14:99:200,0,287
2    125281910    rs17727261    C    T    1499.59    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.342;DB;DP=107;Dels=0.0;FS=3.707;HRun=1;HaplotypeScore=0.5784;MQ=59.78;MQ0=0;MQRankSum=-1.359;QD=14.01;ReadPosRankSum=1.001;SNPEFF_AMINO_ACID_CHANGE=S452L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_125281880_125282029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    0/1:55,52:107:99:1530,0,1448
2    125405302    rs924802    C    T    1010.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1044,75,0
2    125521945    rs962200    C    T    71.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=14.38;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    0/1:2,3:5:59.73:102,0,60
2    125669260    rs2602655    A    G    33.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.11;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:63,0,33
2    125671544    rs1840205    G    A    775.04    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=5.173;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.172;QD=18.9;ReadPosRankSum=-0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431078    GT:AD:DP:GQ:PL    0/1:17,24:41:99:805,0,444
2    127432037    .    G    C    51.94    PASS    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=55.21;MQ0=0;QD=10.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259254    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:84,9,0
2    127447763    rs111829101    G    A    251.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.103;QD=15.69;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259254    GT:AD:DP:GQ:PL    0/1:8,8:16:99:281,0,235
2    127453386    rs1530148    C    T    69.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=9.94;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259254    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,141
2    127453479    rs4538146    G    A    332.68    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.123;QD=12.32;ReadPosRankSum=1.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259254    GT:AD:DP:GQ:PL    0/1:16,11:27:99:363,0,497
2    127453664    rs1050967    A    C    624.93    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.063;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.519;QD=13.59;ReadPosRankSum=-2.082;SNPEFF_AMINO_ACID_CHANGE=G111;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_127453522_127454246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259254    GT:AD:DP:GQ:PL    0/1:18,28:46:99:655,0,578
2    127808226    rs2071270    A    T    72.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.15;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259238    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,101
2    127808532    rs2043798    G    A    367.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=18.37;ReadPosRankSum=-0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259238    GT:AD:DP:GQ:PL    0/1:8,12:20:99:397,0,232
2    127808909    rs6745677    G    A    73.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.31;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259238    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,109
2    127821453    rs78935905    G    A    388.09    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.426;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.475;QD=16.87;ReadPosRankSum=0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259238    GT:AD:DP:GQ:PL    0/1:9,14:23:99:418,0,191
2    127821499    rs72481904    T    C    509.82    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=38;Dels=0.0;FS=2.984;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-1.162;QD=13.42;ReadPosRankSum=0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259238    GT:AD:DP:GQ:PL    0/1:17,21:38:99:540,0,521
2    127826632    rs67327804    A    G    184.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=15.35;ReadPosRankSum=2.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259238    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,137
2    127944781    rs11384285    A    AC    965.32    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.537;DB;DP=45;FS=12.777;HRun=0;HaplotypeScore=100.709;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=0.153;QD=21.45;ReadPosRankSum=0.318;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP27C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335247    GT:AD:DP:GQ:PL    0/1:22,23:45:99:1004,0,707
2    127953054    rs7568070    A    C    509.49    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.407;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=-0.087;QD=14.56;ReadPosRankSum=-0.156;SNPEFF_AMINO_ACID_CHANGE=T192;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_127952911_127953077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP27C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335247    GT:AD:DP:GQ:PL    0/1:12,23:35:99:539,0,399
2    128015367    rs4662718    C    T    209.96    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=11.66;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285398    GT:AD:DP:GQ:PL    0/1:8,10:18:99:240,0,279
2    128028792    rs4150499    T    C    1517.35    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=59.13;MQ0=0;MQRankSum=-0.01;QD=14.18;ReadPosRankSum=1.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285398    GT:AD:DP:GQ:PL    0/1:56,51:107:99:1547,0,1760
2    128029065    rs34670030    GA    G    406.37    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.969;DB;DP=54;FS=4.59;HRun=11;HaplotypeScore=159.5482;IndelType=D;MQ=59.75;MQ0=0;MQRankSum=-0.032;QD=7.53;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285398    GT:AD:DP:GQ:PL    0/1:28,24:54:99:445,0,560
2    128046548    rs4150416    C    A    509.65    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.481;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.028;QD=20.39;ReadPosRankSum=-0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460485    GT:AD:DP:GQ:PL    0/1:9,16:25:99:540,0,280
2    128050000    rs4150404    A    G    53.01    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=5.3;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490062    GT:AD:DP:GQ:PL    0/1:6,4:10:83:83,0,209
2    128050068    rs4150403    C    T    485.78    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.033;DB;DP=23;Dels=0.0;FS=6.788;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.902;QD=21.12;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285398    GT:AD:DP:GQ:PL    0/1:7,16:23:99:516,0,151
2    128050134    rs4150402    T    C    267.13    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.203;DB;DP=40;Dels=0.0;FS=3.189;HRun=2;HaplotypeScore=1.8606;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=6.68;ReadPosRankSum=1.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285398    GT:AD:DP:GQ:PL    0/1:30,10:40:99:297,0,790
2    128065931    .    G    C    62.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.41;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344908    GT:AD:DP:GQ:PL    0/1:2,3:5:69.43:92,0,69
2    128075399    rs77307198    T    C    374.44    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=1.015;DB;DP=41;Dels=0.0;FS=8.565;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.311;QD=9.13;ReadPosRankSum=-1.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344908    GT:AD:DP:GQ:PL    0/1:26,15:41:99:404,0,846
2    128075624    rs67601380    C    CT    183.81    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=39;FS=0.0;HRun=14;HaplotypeScore=341.8264;IndelType=I;MQ=52.45;MQ0=0;MQRankSum=-0.454;QD=4.71;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344908    GT:AD:DP:GQ:PL    0/1:24,9:39:99:223,0,278
2    128079806    rs3732209    A    G    964.81    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.645;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-0.752;QD=15.08;ReadPosRankSum=-1.169;SNPEFF_AMINO_ACID_CHANGE=A287;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128079622_128079828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344908    GT:AD:DP:GQ:PL    0/1:31,33:64:99:995,0,977
2    128087651    rs61422716    C    T    556.57    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=3.217;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.797;QD=11.84;ReadPosRankSum=0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344908    GT:AD:DP:GQ:PL    0/1:27,20:47:99:587,0,901
2    128183914    rs2069928    G    T    69.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.71;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PROC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419985    GT:AD:DP:GQ:PL    0/1:4,4:9:99:99,0,106
2    128184770    rs5937    T    C    974.31    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.788;DB;DP=73;Dels=0.0;FS=2.741;HRun=0;HaplotypeScore=2.8424;MQ=59.68;MQ0=0;MQRankSum=-0.818;QD=13.35;ReadPosRankSum=-1.01;SNPEFF_AMINO_ACID_CHANGE=D215;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128184681_128184798;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PROC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537436    GT:AD:DP:GQ:PL    0/1:35,38:73:99:1004,0,1088
2    128247640    rs334156    T    C    348.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IWS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455721    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:381,30,0
2    128249441    rs334152    C    T    709.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=37.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IWS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455721    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:742,54,0
2    128263476    rs334143    C    T    86.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IWS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295321    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
2    128281469    rs2303947    C    T    458.55    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.14;MQ0=0;MQRankSum=1.771;QD=16.98;ReadPosRankSum=2.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IWS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295321    GT:AD:DP:GQ:PL    0/1:13,14:27:99:489,0,442
2    128339456    rs4662740    G    T    792.64    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.081;DB;DP=63;Dels=0.0;FS=1.158;HRun=1;HaplotypeScore=0.6651;MQ=58.89;MQ0=0;MQRankSum=-0.096;QD=12.58;ReadPosRankSum=1.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:35,28:63:99:823,0,967
2    128339758    rs17015424    C    G    378.15    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.898;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.908;QD=15.76;ReadPosRankSum=2.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:10,14:24:99:408,0,338
2    128340253    rs10194727    T    C    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    128341603    rs10928772    T    G    365.65    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.86;MQ0=0;MQRankSum=-0.136;QD=14.63;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:13,12:25:99:396,0,457
2    128342547    rs4662741    G    A    2758.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.7;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2792,205,0
2    128342735    rs35971939    T    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
2    128345960    rs10928773    T    C    411.34    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=25;Dels=0.0;FS=2.481;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.137;QD=16.45;ReadPosRankSum=-0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:11,14:25:99:441,0,376
2    128346228    rs11673952    A    C    453.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:487,39,0
2    128350551    rs11678239    G    A    69.23    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.65;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,173
2    128350578    rs111486874    T    TG    260.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=23.6143;IndelType=I;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:303,21,0
2    128351346    rs7558838    T    C    81.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:4,4:8:99:111,0,137
2    128363530    rs77250827    G    GC    347.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=49.0776;IndelType=I;MQ=57.66;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:389,27,0
2    128367092    rs777432    G    A    496.85    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=3.141;DB;DP=38;Dels=0.0;FS=3.169;HRun=2;HaplotypeScore=1.9705;MQ=59.51;MQ0=0;MQRankSum=0.235;QD=13.07;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=S942;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128367081_128367290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389524    GT:AD:DP:GQ:PL    0/1:21,17:38:99:527,0,605
2    128369896    rs777435    A    G    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    128370200    rs705092    G    A    716.39    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.531;QD=17.06;ReadPosRankSum=-0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:16,26:42:99:746,0,429
2    128377833    rs2248519    C    G    1377.95    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.807;DB;DP=85;Dels=0.0;FS=2.646;HRun=0;HaplotypeScore=2.7787;MQ=59.46;MQ0=0;MQRankSum=0.244;QD=16.21;ReadPosRankSum=0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:36,49:85:99:1408,0,1013
2    128381594    rs13015157    C    T    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
2    128382859    rs2245297    C    T    84.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437387    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    128385340    rs79948094    C    A    106.83    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=9.71;ReadPosRankSum=-0.387;SNPEFF_AMINO_ACID_CHANGE=S408Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128385312_128385388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:5,6:11:99:137,0,161
2    128388790    rs13025791    G    A    221.85    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=22;Dels=0.0;FS=1.792;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.067;QD=10.08;ReadPosRankSum=-0.601;SNPEFF_AMINO_ACID_CHANGE=E1623;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128388781_128388935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389524    GT:AD:DP:GQ:PL    0/1:13,9:22:99:252,0,419
2    128388862    rs13025959    G    C    638.45    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.38;DB;DP=45;Dels=0.0;FS=2.963;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.541;QD=14.19;ReadPosRankSum=1.247;SNPEFF_AMINO_ACID_CHANGE=E1647D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128388781_128388935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389524    GT:AD:DP:GQ:PL    0/1:23,22:45:99:668,0,613
2    128389343    rs10208043    C    T    305.86    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=18;Dels=0.0;FS=5.614;HRun=0;HaplotypeScore=0.9992;MQ=58.96;MQ0=0;MQRankSum=-0.133;QD=16.99;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:8,10:18:99:336,0,234
2    128390689    rs2009707    A    G    39.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.87;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272666    GT:AD:DP:GQ:PL    0/1:2,3:5:33.20:69,0,33
2    128392468    rs4662749    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324938    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
2    128392547    rs4662750    A    C    254.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=36.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324938    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
2    128393261    rs2255178    T    C    115.80    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=10.53;ReadPosRankSum=-0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324938    GT:AD:DP:GQ:PL    0/1:4,7:11:99:146,0,132
2    128393289    rs2255177    T    C    100.10    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=9.1;ReadPosRankSum=1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324938    GT:AD:DP:GQ:PL    0/1:6,5:11:99:130,0,199
2    128393390    rs61748909    G    A    109.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.14;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=D1946N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128393297_128393482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409816    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,132
2    128393715    rs189985430    G    A    382.50    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.279;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.899;QD=16.63;ReadPosRankSum=-0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324938    GT:AD:DP:GQ:PL    0/1:10,13:23:99:412,0,304
2    128393800    rs2255161    T    C    621.54    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.169;DB;DP=57;Dels=0.0;FS=1.105;HRun=0;HaplotypeScore=0.734;MQ=58.93;MQ0=0;MQRankSum=1.374;QD=10.9;ReadPosRankSum=-0.077;SNPEFF_AMINO_ACID_CHANGE=Y1982;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128393783_128393899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409816    GT:AD:DP:GQ:PL    0/1:33,24:57:99:652,0,954
2    128394758    rs2255039    T    C    199.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324938    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
2    128394955    rs11686946    A    G    131.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=57.39;MQ0=0;MQRankSum=-0.573;QD=14.63;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=Q2105R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128394891_128395303;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409816    GT:AD:DP:GQ:PL    0/1:3,6:9:99:162,0,100
2    128396807    rs891515    A    G    717.90    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.28;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.9;QD=12.59;ReadPosRankSum=-1.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422034    GT:AD:DP:GQ:PL    0/1:28,29:57:99:748,0,937
2    128411934    rs6707277    A    G    1432.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272644    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1465,114,0
2    128411950    rs6707282    A    G    1183.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=57.87;MQ0=0;QD=26.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272644    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1216,114,0
2    128463618    rs2923    C    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310981    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    128495645    rs6754215    G    A    375.32    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.334;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.466;QD=14.44;ReadPosRankSum=-0.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322313    GT:AD:DP:GQ:PL    0/1:12,14:26:99:405,0,383
2    128526579    .    T    TTAAA    670.03    PASS    AC=2;AF=1.00;AN=2;DP=29;FS=0.0;HRun=0;HaplotypeScore=126.3445;IndelType=I;MQ=58.57;MQ0=0;QD=23.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322313    GT:AD:DP:GQ:PL    1/1:18,9:29:33.11:712,33,0
2    128528694    rs116634293    C    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    128699833    rs1370229    C    T    478.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259234    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:511,39,0
2    128708063    rs2461463    T    C    141.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259234    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:174,15,0
2    128744580    rs2948068    A    G    929.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259234    GT:AD:DP:GQ:PL    1/1:0,28:28:75.20:963,75,0
2    128753854    rs1550174    T    C    1394.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4101;MQ=59.46;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259234    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1428,111,0
2    128757294    .    C    T    111.23    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DP=21;Dels=0.0;FS=9.41;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.124;QD=5.3;ReadPosRankSum=-0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259234    GT:AD:DP:GQ:PL    0/1:16,5:21:99:141,0,560
2    128757804    rs10928793    C    T    663.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259234    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:697,51,0
2    128855267    rs10928803    T    C    600.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,18:18:51.13:634,51,0
2    128865858    rs6736472    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430075    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
2    128870808    rs4662775    T    C    2276.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_AMINO_ACID_CHANGE=N200;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128870658_128870832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375990    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2309,172,0
2    128870952    rs4662776    C    T    204.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
2    128874061    rs10210598    G    A    210.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
2    128877837    rs4662593    G    C    1037.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1070,78,0
2    128878014    rs4662594    G    A    5436.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.2971;MQ=59.61;MQ0=0;QD=30.54;SNPEFF_AMINO_ACID_CHANGE=K295;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_128877930_128878030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375990    GT:AD:DP:GQ:PL    1/1:0,176:177:99:5436,433,0
2    128878667    rs6430990    T    C    462.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:495,39,0
2    128879022    rs6430991    G    C    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.58;MQ0=0;QD=20.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    128880899    rs4480941    T    A    318.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
2    128890878    rs34066685    T    TG    3173.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.0;HRun=1;HaplotypeScore=143.5934;IndelType=I;MQ=60.17;MQ0=0;QD=44.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,72:72:99:3215,217,0
2    128891067    rs11903649    C    T    84.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UGGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259253    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
2    129075877    .    G    T    61.30    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DP=15;Dels=0.0;FS=2.533;HRun=1;HaplotypeScore=0.0;MQ=26.64;MQ0=1;MQRankSum=-0.933;QD=4.09;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=D87E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_129075611_129076151;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HS6ST1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259241    GT:AD:DP:GQ:PL    0/1:10,5:15:91.30:91,0,182
2    129075961    rs61732881    T    C    103.37    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.71;MQ0=0;QD=14.77;SNPEFF_AMINO_ACID_CHANGE=T59;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_129075611_129076151;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HS6ST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259241    GT:AD:DP:GQ:PL    1/1:0,7:7:14.99:136,15,0
2    129276232    rs2247927    A    G    1099.77    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.04;DB;DP=85;Dels=0.0;FS=3.118;HRun=0;HaplotypeScore=3.2779;MQ=58.74;MQ0=0;MQRankSum=-0.717;QD=12.94;ReadPosRankSum=0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ISCA1P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427740    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1130,0,1421
2    129276233    rs2247926    A    T    1211.78    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.756;DB;DP=85;Dels=0.0;FS=3.135;HRun=1;HaplotypeScore=3.2779;MQ=58.74;MQ0=0;MQRankSum=0.708;QD=14.26;ReadPosRankSum=0.655;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ISCA1P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427740    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1242,0,1436
2    129276720    rs841094    T    C    355.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.895;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.93;MQ0=2;MQRankSum=-2.383;QD=7.89;ReadPosRankSum=0.666;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ISCA1P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427740    GT:AD:DP:GQ:PL    0/1:25,20:45:99:385,0,829
2    129276784    rs1814530    C    T    160.50    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.33;MQ0=0;MQRankSum=1.369;QD=12.35;ReadPosRankSum=2.627;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ISCA1P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427740    GT:AD:DP:GQ:PL    0/1:7,6:13:99:190,0,159
2    129999882    rs1251175    C    T    35.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC079586.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375987    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
2    130000040    rs1251176    G    C    257.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC079586.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375987    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:290,24,0
2    130681407    rs7591781    G    C    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC079776.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433290    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    130681447    rs11897873    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC079776.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433290    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
2    130683344    rs10928942    G    A    618.53    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.042;QD=11.67;ReadPosRankSum=0.187;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC079776.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433290    GT:AD:DP:GQ:PL    0/1:28,25:53:99:649,0,898
2    130738163    rs144773989    G    A    1583.71    MQFilter40    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.196;DB;DP=191;Dels=0.0;FS=2.64;HRun=4;HaplotypeScore=3.9776;MQ=31.41;MQ0=57;MQRankSum=-0.501;QD=8.29;ReadPosRankSum=-0.574;SNPEFF_AMINO_ACID_CHANGE=A159T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130737235_130740311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB6C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000410061    GT:AD:DP:GQ:PL    0/1:114,77:191:99:1614,0,1616
2    130750446    .    C    A    453.08    MQFilter40    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.33;DP=76;Dels=0.0;FS=7.322;HRun=0;HaplotypeScore=0.0;MQ=21.34;MQ0=21;MQRankSum=-0.763;QD=5.96;ReadPosRankSum=1.856;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018865.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440931    GT:AD:DP:GQ:PL    0/1:37,39:76:99:483,0,540
2    130751121    rs4362508    A    T    449.98    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.37;DB;DP=35;Dels=0.0;FS=5.287;HRun=0;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;MQRankSum=0.281;QD=12.86;ReadPosRankSum=-1.469;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC018865.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401540    GT:AD:DP:GQ:PL    0/1:17,18:35:99:480,0,558
2    130751141    rs4493197    C    A    486.87    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=38;Dels=0.0;FS=2.987;HRun=0;HaplotypeScore=0.0;MQ=58.82;MQ0=0;MQRankSum=-0.921;QD=12.81;ReadPosRankSum=-1.184;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC018865.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401540    GT:AD:DP:GQ:PL    0/1:20,18:38:99:517,0,579
2    130784955    rs7595853    T    A    147.80    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.97;MQ0=0;MQRankSum=-1.663;QD=13.44;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018865.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449736    GT:AD:DP:GQ:PL    0/1:4,7:11:99:178,0,134
2    130785180    rs4444464    C    T    421.24    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=2.656;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=46.38;MQ0=0;MQRankSum=-3.589;QD=13.16;ReadPosRankSum=-0.426;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018865.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449736    GT:AD:DP:GQ:PL    0/1:13,19:32:99:451,0,394
2    130792213    rs13022989    T    G    253.32    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.755;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.132;QD=9.74;ReadPosRankSum=1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018865.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428123    GT:AD:DP:GQ:PL    0/1:17,9:26:99:283,0,605
2    130831551    .    G    A    50.76    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.5;MQ0=0;MQRankSum=-0.55;QD=7.25;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360967    GT:AD:DP:GQ:PL    0/1:3,4:7:42.83:81,0,43
2    130831636    .    C    T    30.83    MQFilter40;QDFilter2    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.69;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=18.12;MQ0=7;MQRankSum=1.009;QD=1.23;ReadPosRankSum=-0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360967    GT:AD:DP:GQ:PL    0/1:17,8:25:60.82:61,0,180
2    130832185    .    G    A    335.31    MQFilter40    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=3.035;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=10.82;MQ0=105;MQRankSum=-0.955;QD=2.34;ReadPosRankSum=-0.743;SNPEFF_AMINO_ACID_CHANGE=R954W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130831108_130833145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:105,38:143:46.73:365,0,47
2    130832292    rs75775141    T    A    1241.12    FSFilter60;MQFilter40    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=1.843;DB;DP=98;Dels=0.0;FS=64.315;HRun=1;HaplotypeScore=0.0;MQ=25.21;MQ0=16;MQRankSum=1.35;QD=12.66;ReadPosRankSum=2.206;SNPEFF_AMINO_ACID_CHANGE=Y918F;SNPEFF_CODON_CHANGE=tAt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130831108_130833145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:36,62:98:99:1271,0,477
2    130832358    .    T    C    304.09    MQFilter40    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DP=74;Dels=0.0;FS=30.575;HRun=0;HaplotypeScore=0.8941;MQ=32.16;MQ0=7;MQRankSum=1.908;QD=4.11;ReadPosRankSum=0.441;SNPEFF_AMINO_ACID_CHANGE=H896R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130831108_130833145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:51,23:74:99:334,0,1244
2    130832389    .    G    T    401.94    MQFilter40    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DP=77;Dels=0.0;FS=35.414;HRun=0;HaplotypeScore=3.6415;MQ=32.88;MQ0=4;MQRankSum=1.464;QD=5.22;ReadPosRankSum=-0.415;SNPEFF_AMINO_ACID_CHANGE=P886T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130831108_130833145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:56,21:77:99:432,0,1397
2    130832444    rs2599794    C    A    1578.28    MQFilter40    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.144;DB;DP=135;Dels=0.0;FS=33.549;HRun=0;HaplotypeScore=2.4558;MQ=36.45;MQ0=6;MQRankSum=-3.05;QD=11.69;ReadPosRankSum=-0.426;SNPEFF_AMINO_ACID_CHANGE=E867D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130831108_130833145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:65,70:135:99:1608,0,1804
2    130832531    rs2122977    A    G    430.04    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.195;DB;DP=250;DS;Dels=0.0;FS=32.677;HRun=1;HaplotypeScore=3.3453;MQ=44.56;MQ0=9;MQRankSum=-5.183;QD=1.72;ReadPosRankSum=-2.444;SNPEFF_AMINO_ACID_CHANGE=A838;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130831108_130833145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:200,50:250:99:460,0,6114
2    130832669    .    G    A    226.10    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=2.555;DP=156;Dels=0.0;FS=39.511;HRun=0;HaplotypeScore=1.6553;MQ=42.74;MQ0=8;MQRankSum=-5.495;QD=1.45;ReadPosRankSum=1.764;SNPEFF_AMINO_ACID_CHANGE=N792;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130831108_130833145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:132,24:156:99:256,0,3608
2    130833159    .    G    A    764.87    MQFilter40    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.408;DP=172;Dels=0.0;FS=2.021;HRun=3;HaplotypeScore=7.3332;MQ=23.52;MQ0=61;MQRankSum=0.973;QD=4.45;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:122,50:172:99:795,0,1398
2    130868253    .    T    C    46.24    MQFilter40;QDFilter2    AB=0.972;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DP=106;Dels=0.0;FS=7.068;HRun=1;HaplotypeScore=0.0;MQ=7.97;MQ0=98;MQRankSum=-0.322;QD=0.44;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=R306;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130868116_130868253;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:103,3:106:76.24:76,0,143
2    130872658    .    A    T    653.10    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.235;DP=207;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.494;MQ=16.25;MQ0=115;MQRankSum=0.706;QD=3.16;ReadPosRankSum=-0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:138,69:207:99:683,0,659
2    130877752    rs77273091    T    C    829.79    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=229;Dels=0.0;FS=15.215;HRun=1;HaplotypeScore=2.6514;MQ=44.44;MQ0=27;MQRankSum=-11.623;QD=3.62;ReadPosRankSum=1.652;SNPEFF_AMINO_ACID_CHANGE=S113G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130877568_130878182;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357462    GT:AD:DP:GQ:PL    0/1:120,109:229:99:860,0,3964
2    130897055    rs28751929    G    A    130.37    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=1.098;QD=11.85;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC74B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409128    GT:AD:DP:GQ:PL    0/1:6,5:11:99:160,0,162
2    130897218    rs13006246    T    C    54.63    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.08;MQ0=0;MQRankSum=-0.919;QD=3.9;ReadPosRankSum=-0.778;SNPEFF_AMINO_ACID_CHANGE=H245R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130897175_130897251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC74B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409488    GT:AD:DP:GQ:PL    0/1:10,4:14:84.62:85,0,307
2    130898054    .    G    C    45.52    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.2;MQ0=6;MQRankSum=1.931;QD=2.53;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC74B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409128    GT:AD:DP:GQ:PL    0/1:14,4:18:68.76:76,0,69
2    130899804    rs138331089    T    C    111.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.7;MQ0=5;QD=11.12;SNPEFF_AMINO_ACID_CHANGE=H149R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130899706_130899954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC74B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310463    GT:AD:DP:GQ:PL    1/1:0,10:10:15.01:144,15,0
2    130948314    rs71396588    G    GT    596.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.484;DB;DP=48;FS=0.0;HRun=12;HaplotypeScore=299.3284;IndelType=I;MQ=57.93;MQ0=0;MQRankSum=-0.207;QD=12.42;ReadPosRankSum=0.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MZT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281871    GT:AD:DP:GQ:PL    1/1:18,28:48:27.52:638,28,0
2    130949411    rs10208844    G    T    3033.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=42.34;MQ0=1;QD=30.04;SNPEFF_AMINO_ACID_CHANGE=A449E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130949318_130949700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA3E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312988    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3067,247,0
2    130951548    rs1052319    G    A    3734.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.61;MQ0=0;QD=34.9;SNPEFF_AMINO_ACID_CHANGE=A289;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130951359_130952039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA3E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312988    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3734,280,0
2    130951566    rs7340193    G    A    1614.28    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.602;DB;DP=101;Dels=0.0;FS=8.147;HRun=0;HaplotypeScore=0.734;MQ=56.07;MQ0=0;MQRankSum=1.623;QD=15.98;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=H283;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_130951359_130952039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA3E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312988    GT:AD:DP:GQ:PL    0/1:47,54:101:99:1644,0,1390
2    131100496    rs11542416    G    A    1216.43    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2949;MQ=60.0;MQ0=0;MQRankSum=-0.504;QD=14.83;ReadPosRankSum=0.708;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460766    GT:AD:DP:GQ:PL    0/1:36,46:82:99:1246,0,1079
2    131100734    rs11542411    G    A    173.40    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.306;DB;DP=22;Dels=0.0;FS=2.73;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.007;QD=7.88;ReadPosRankSum=-1.38;SNPEFF_AMINO_ACID_CHANGE=E27K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131100659_131100767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259239    GT:AD:DP:GQ:PL    0/1:15,7:22:99:203,0,497
2    131116404    rs7568956    T    C    722.41    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=3.358;DB;DP=61;Dels=0.0;FS=1.098;HRun=1;HaplotypeScore=0.9332;MQ=59.24;MQ0=0;MQRankSum=-0.931;QD=11.84;ReadPosRankSum=-0.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000175756    GT:AD:DP:GQ:PL    0/1:32,29:61:99:752,0,1008
2    131117120    rs55841189    G    A    255.78    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=19;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.184;QD=13.46;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000175756    GT:AD:DP:GQ:PL    0/1:10,9:19:99:286,0,299
2    131130678    rs10189689    T    C    55.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.639;DB;DP=20;Dels=0.0;FS=1.952;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.702;QD=2.8;ReadPosRankSum=-1.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428843    GT:AD:DP:GQ:PL    0/1:12,8:20:85.98:86,0,393
2    131221102    rs139258542    T    C    260.43    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=9.75;MQ0=91;MQRankSum=-0.866;QD=1.93;ReadPosRankSum=0.866;SNPEFF_AMINO_ACID_CHANGE=M839V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131217028_131221717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    1/1:3,132:135:33.01:293,33,0
2    131221170    rs144934754    C    T    525.12    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.36;DB;DP=139;Dels=0.0;FS=2.071;HRun=0;HaplotypeScore=0.5784;MQ=20.99;MQ0=43;MQRankSum=-0.657;QD=3.78;ReadPosRankSum=-0.939;SNPEFF_AMINO_ACID_CHANGE=R816H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131217028_131221717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    0/1:69,69:139:99:555,0,904
2    131221445    .    G    A    112    MQFilter40;QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DP=199;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=4.78;MQ0=187;MQRankSum=2.533;QD=0.56;ReadPosRankSum=1.788;SNPEFF_AMINO_ACID_CHANGE=D724;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131217028_131221717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    0/1:157,41:199:23.36:142,0,23
2    131221622    .    C    T    475.16    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-3.723;DP=74;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=14.34;MQ0=46;MQRankSum=3.667;QD=6.42;ReadPosRankSum=-3.723;SNPEFF_AMINO_ACID_CHANGE=M665I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131217028_131221717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    1/1:28,46:74:53.98:508,54,0
2    131232387    .    A    G    38.01    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=4.05;MQ0=66;QD=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    1/1:15,55:70:8.97:70,9,0
2    131232617    .    G    T    241.41    MQFilter40    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.723;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8401;MQ=11.7;MQ0=47;MQRankSum=-0.395;QD=3.09;ReadPosRankSum=2.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    0/1:51,27:78:99:271,0,209
2    131254320    .    C    T    256.99    MQFilter40    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=28.19;MQ0=5;MQRankSum=-1.457;QD=9.88;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    0/1:11,15:26:99:287,0,263
2    131266530    rs10737928    C    A    3204.34    MQFilter40    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=5.508;DB;DP=250;DS;Dels=0.0;FS=6.753;HRun=0;HaplotypeScore=0.6651;MQ=38.0;MQ0=1;MQRankSum=3.131;QD=12.82;ReadPosRankSum=1.172;SNPEFF_AMINO_ACID_CHANGE=T93;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131266288_131267239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    0/1:127,123:250:99:3234,0,3023
2    131266584    rs28754532    A    G    610.40    MQFilter40    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.254;DB;DP=244;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1017;MQ=38.71;MQ0=4;MQRankSum=-7.199;QD=2.5;ReadPosRankSum=-0.754;SNPEFF_AMINO_ACID_CHANGE=S75;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131266288_131267239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    0/1:186,57:244:99:640,0,5548
2    131266746    rs62163654    C    T    1672.23    MQFilter40    AB=0.287;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=244;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.1;MQ0=139;MQRankSum=-0.627;QD=6.85;ReadPosRankSum=0.219;SNPEFF_AMINO_ACID_CHANGE=R21;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131266288_131267239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451531    GT:AD:DP:GQ:PL    0/1:70,174:244:99:1702,0,327
2    131377707    .    A    G    50.96    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=7.59;MQ0=26;MQRankSum=0.727;QD=1.64;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=A263;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131377618_131377724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:2,28:31:9.01:83,9,0
2    131379209    .    T    C    1000.88    MQFilter40    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.861;DP=239;DS;Dels=0.0;FS=2.379;HRun=1;HaplotypeScore=1.9468;MQ=17.71;MQ0=78;MQRankSum=-0.936;QD=4.19;ReadPosRankSum=-0.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    0/1:125,114:239:99:1031,0,1884
2    131403183    rs141545589    C    T    118.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=15.0;MQ0=18;QD=5.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:17,5:22:12.04:151,12,0
2    131403217    .    C    A    39.17    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.14;MQ0=51;QD=0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:33,21:54:6.02:70,6,0
2    131407692    rs62165268    T    C    846.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=35.94;MQ0=4;QD=24.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:0,34:34:72.15:879,72,0
2    131407943    .    T    G    63.39    MQFilter40    AC=2;AF=1.00;AN=2;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.51;MQ0=1;QD=10.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:0,6:6:9.01:95,9,0
2    131414061    rs62165274    A    G    471.78    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.63;MQ0=4;QD=18.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:0,25:25:45.12:505,45,0
2    131414073    rs62165275    T    A    663.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.37;MQ0=4;QD=20.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:0,33:33:66.08:696,66,0
2    131414176    rs62165276    C    T    3689.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.7;MQ0=2;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=R615W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131414122_131415664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3689,298,0
2    131414394    .    C    T    222.39    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.868;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.43;MQ0=26;MQRankSum=0.217;QD=5.3;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=D687;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131414122_131415664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEJ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409602    GT:AD:DP:GQ:PL    1/1:2,40:42:10.28:255,10,0
2    131460674    .    G    A    68.38    MQFilter40    AC=2;AF=1.00;AN=2;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.85;MQ0=16;QD=3.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC140481.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425151    GT:AD:DP:GQ:PL    1/1:6,13:19:9.02:100,9,0
2    131487673    rs272128    A    C    1413.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=T317P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131486643_131487909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR148;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309926    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1447,108,0
2    131520178    rs77687733    C    G    779.13    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=53;Dels=0.0;FS=2.433;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.098;QD=14.7;ReadPosRankSum=-0.205;SNPEFF_AMINO_ACID_CHANGE=A178G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131519627_131522659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM123C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321420    GT:AD:DP:GQ:PL    0/1:24,29:53:99:809,0,690
2    131520663    rs1905235    T    C    1152.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=S340P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131519627_131522659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM123C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321420    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1185,90,0
2    131672271    rs6752724    T    C    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_131671559_131675071;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409359    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    131672950    rs12464119    A    G    727.01    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=0.565;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.394;QD=15.47;ReadPosRankSum=0.544;SNPEFF_AMINO_ACID_CHANGE=Q147;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131671559_131675071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409359    GT:AD:DP:GQ:PL    0/1:22,25:47:99:757,0,606
2    131673316    rs3739129    C    T    670.98    PASS    AB=0.276;AC=1;AF=0.50;AN=2;BaseQRankSum=2.494;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.52;MQ=58.39;MQ0=0;MQRankSum=0.531;QD=23.14;ReadPosRankSum=-0.424;SNPEFF_AMINO_ACID_CHANGE=P269;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131671559_131675071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409359    GT:AD:DP:GQ:PL    0/1:8,21:29:99:701,0,142
2    131673702    rs62178867    G    A    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.04;SNPEFF_AMINO_ACID_CHANGE=S398N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131671559_131675071;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409359    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
2    131674285    rs3739127    A    G    586.17    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.905;DB;DP=35;Dels=0.0;FS=1.348;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.69;QD=16.75;ReadPosRankSum=0.051;SNPEFF_AMINO_ACID_CHANGE=S592;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131671559_131675071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409359    GT:AD:DP:GQ:PL    0/1:13,22:35:99:616,0,407
2    131688382    rs72861463    G    T    114.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.34;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326016    GT:AD:DP:GQ:PL    0/1:3,4:7:97.28:144,0,97
2    131688587    rs6718816    G    A    751.53    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.892;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.505;QD=13.18;ReadPosRankSum=0.136;SNPEFF_AMINO_ACID_CHANGE=A199;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131688525_131688830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438985    GT:AD:DP:GQ:PL    0/1:31,26:57:99:782,0,821
2    131688783    rs61750360    G    A    346.31    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=22;Dels=0.0;FS=4.018;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.604;QD=15.74;ReadPosRankSum=0.533;SNPEFF_AMINO_ACID_CHANGE=V265I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131688525_131688830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438985    GT:AD:DP:GQ:PL    0/1:9,13:22:99:376,0,224
2    131703968    rs67022442    G    C    484.84    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.691;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=24.24;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326016    GT:AD:DP:GQ:PL    0/1:6,14:20:99:515,0,181
2    131769237    rs13023338    G    A    1078.25    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=4.319;DB;DP=62;Dels=0.0;FS=6.783;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.918;QD=17.39;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326016    GT:AD:DP:GQ:PL    0/1:25,37:62:99:1108,0,682
2    131813442    rs10167343    A    G    151.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM168B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354183    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:184,15,0
2    131976272    rs62177515    G    C    2705.47    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.974;DB;DP=207;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=2.5439;MQ=22.81;MQ0=76;MQRankSum=-1.218;QD=13.07;ReadPosRankSum=-0.92;SNPEFF_AMINO_ACID_CHANGE=G99;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_131975882_131976496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    1/1:2,205:207:99:2738,255,0
2    131988269    rs4850270    T    C    61.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.3;MQ0=3;QD=8.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    1/1:0,7:7:11.95:94,12,0
2    131994230    rs143181131    C    A    239.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.17;MQ0=10;QD=10.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    1/1:5,18:23:35.84:272,36,0
2    132021023    .    G    A    255.19    MQFilter40;QDFilter2    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.42;DP=248;DS;Dels=0.0;FS=6.177;HRun=3;HaplotypeScore=7.6443;MQ=21.84;MQ0=72;MQRankSum=-4.873;QD=1.03;ReadPosRankSum=-2.268;SNPEFF_AMINO_ACID_CHANGE=M665I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132020928_132022965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    0/1:175,72:248:99:285,0,2881
2    132021404    .    C    T    503.74    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.638;DP=207;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4326;MQ=28.05;MQ0=58;MQRankSum=-7.125;QD=2.43;ReadPosRankSum=-1.863;SNPEFF_AMINO_ACID_CHANGE=N792;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132020928_132022965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    0/1:117,90:207:99:534,0,2316
2    132021475    rs11546936    G    A    440.61    MQFilter40    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.44;DB;DP=217;Dels=0.0;FS=13.231;HRun=0;HaplotypeScore=2.7752;MQ=35.46;MQ0=36;MQRankSum=-7.89;QD=2.03;ReadPosRankSum=0.243;SNPEFF_AMINO_ACID_CHANGE=R816H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132020928_132022965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    0/1:146,71:217:99:471,0,3182
2    132021815    .    G    A    1041.93    MQFilter40    AB=0.668;AC=1;AF=0.50;AN=2;BaseQRankSum=3.498;DP=248;DS;Dels=0.0;FS=7.554;HRun=0;HaplotypeScore=4.3559;MQ=28.45;MQ0=15;MQRankSum=-5.403;QD=4.2;ReadPosRankSum=1.405;SNPEFF_AMINO_ACID_CHANGE=T929;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132020928_132022965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    0/1:165,82:248:99:1072,0,3780
2    132021857    .    C    T    669.44    MQFilter40    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=7.095;DP=250;DS;Dels=0.0;FS=2.509;HRun=0;HaplotypeScore=10.0633;MQ=23.85;MQ0=59;MQRankSum=-1.334;QD=2.68;ReadPosRankSum=1.065;SNPEFF_AMINO_ACID_CHANGE=P943;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132020928_132022965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    0/1:169,80:250:99:699,0,2780
2    132021908    .    G    A    68.61    MQFilter40;QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.87;DP=219;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.56;MQ0=139;MQRankSum=-1.584;QD=0.31;ReadPosRankSum=1.561;SNPEFF_AMINO_ACID_CHANGE=A960;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132020928_132022965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131180.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356920    GT:AD:DP:GQ:PL    0/1:182,35:219:98.60:99,0,507
2    132044746    rs76191423    C    A    91.65    MQFilter40;QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.364;DB;DP=116;Dels=0.0;FS=2.916;HRun=0;HaplotypeScore=1.445;MQ=38.29;MQ0=13;MQRankSum=-1.342;QD=0.79;ReadPosRankSum=-2.668;SNPEFF_AMINO_ACID_CHANGE=A22D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132044330_132045143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F31P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416266    GT:AD:DP:GQ:PL    0/1:102,14:116:99:122,0,2407
2    132044787    rs112500726    G    A    79.21    QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7052;MQ=43.96;MQ0=6;MQRankSum=-2.934;QD=0.64;ReadPosRankSum=3.63;SNPEFF_AMINO_ACID_CHANGE=V36M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132044330_132045143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F31P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416266    GT:AD:DP:GQ:PL    0/1:108,15:123:99:109,0,2891
2    132044797    .    C    A    82.18    QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.582;DP=123;Dels=0.0;FS=1.195;HRun=0;HaplotypeScore=2.5395;MQ=44.72;MQ0=5;MQRankSum=-3.076;QD=0.67;ReadPosRankSum=1.945;SNPEFF_AMINO_ACID_CHANGE=A39D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132044330_132045143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F31P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416266    GT:AD:DP:GQ:PL    0/1:108,15:123:99:112,0,3099
2    132044992    rs4850179    T    C    1233.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.56;MQ0=10;QD=18.98;SNPEFF_AMINO_ACID_CHANGE=I104T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132044330_132045143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F31P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416266    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1267,123,0
2    132045098    rs4850180    C    G    425.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.62;MQ0=6;QD=15.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303908    GT:AD:DP:GQ:PL    1/1:0,28:28:47.92:459,48,0
2    132060690    rs7421366    G    T    645.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303908    GT:AD:DP:GQ:PL    1/1:0,20:20:51.15:678,51,0
2    132066470    rs57075481    TC    T    950.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=28;FS=7.482;HRun=2;HaplotypeScore=180.0593;IndelType=D;MQ=53.34;MQ0=4;MQRankSum=1.609;QD=28.81;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303908    GT:AD:DP:GQ:PL    1/1:6,27:28:39.27:993,39,0
2    132110123    rs34283659    G    A    905.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6617;MQ=59.42;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303908    GT:AD:DP:GQ:PL    1/1:0,32:32:78.21:938,78,0
2    132110463    rs12477219    G    C    1958.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.46;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303908    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1992,165,0
2    132110862    .    G    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_AMINO_ACID_CHANGE=P231;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132110593_132111099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303908    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
2    132120501    rs146351322    C    CT    3118.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.538;DB;DP=97;FS=0.0;HRun=7;HaplotypeScore=254.9019;IndelType=I;MQ=48.6;MQ0=0;MQRankSum=-0.681;QD=32.15;ReadPosRankSum=0.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073869.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484914    GT:AD:DP:GQ:PL    1/1:9,88:97:99:3160,239,0
2    132248584    rs10182785    T    C    148.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=50.69;MQ0=0;QD=21.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MZT2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309451    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:181,15,0
2    132349222    rs6711357    A    C    4437.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6176;MQ=53.92;MQ0=0;QD=34.13;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4437,349,0
2    132349224    rs6751575    G    C    4225.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6176;MQ=54.08;MQ0=0;MQRankSum=-0.511;QD=30.18;ReadPosRankSum=1.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:1,139:140:99:4225,317,0
2    132349413    rs6751827    G    A    7134.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=211;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=58.72;MQ0=0;QD=33.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,210:211:99:7134,548,0
2    132349509    rs12994124    G    T    1827.86    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.505;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7333;MQ=59.19;MQ0=0;MQRankSum=0.329;QD=12.03;ReadPosRankSum=-0.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    0/1:80,70:151:99:1858,0,2569
2    132349648    rs13029900    T    G    2472.53    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.344;DB;DP=168;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9663;MQ=59.32;MQ0=0;MQRankSum=-1.462;QD=14.72;ReadPosRankSum=0.353;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    0/1:75,93:168:99:2503,0,2326
2    132354365    rs2136463    G    C    7843.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=46.24;MQ0=6;QD=31.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:1,249:250:99:7843,629,0
2    132354479    rs6704592    C    A    6413.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=244;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=35.21;MQ0=17;QD=26.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,244:244:99:6413,559,0
2    132354586    rs6710546    A    G    4735.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2223;MQ=31.46;MQ0=25;QD=23.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:13,187:200:99:4736,444,0
2    132354807    rs6705059    C    T    3923.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.289;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9025;MQ=42.52;MQ0=13;MQRankSum=1.4;QD=28.03;ReadPosRankSum=-1.178;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:7,133:140:99:3924,300,0
2    132354853    rs6705083    C    G    2138.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=47.91;MQ0=0;MQRankSum=1.223;QD=31.44;ReadPosRankSum=0.815;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:1,67:68:99:2171,156,0
2    132357474    rs1848717    C    T    1214.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.44;MQ0=1;QD=28.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1247,108,0
2    132357667    rs4107587    A    G    3766.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7447;MQ=32.07;MQ0=10;QD=23.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:1,156:159:99:3767,330,0
2    132357850    rs6430893    T    C    872.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.87;MQ0=0;QD=36.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,24:24:69.20:905,69,0
2    132358779    rs6430894    G    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    132358911    rs6430895    G    A    1664.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.03;MQ0=0;QD=36.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1697,126,0
2    132359034    rs6430896    A    G    5167.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.82;MQ0=6;QD=30.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,171:171:99:5167,409,0
2    132359063    rs60230063    A    G    6488.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=194;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=49.85;MQ0=0;QD=33.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,192:194:99:6489,487,0
2    132359089    rs60809087    C    A    6521.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=194;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.169;MQ=52.65;MQ0=0;QD=33.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,194:194:99:6522,491,0
2    132359185    rs62176601    T    C    1296.17    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DB;DP=113;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=2.4328;MQ=51.11;MQ0=4;MQRankSum=-0.689;QD=11.47;ReadPosRankSum=0.071;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    0/1:61,52:113:99:1326,0,1862
2    132359263    rs60766309    T    C    744.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=37.76;MQ0=3;QD=23.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,32:32:66.18:777,66,0
2    132359348    rs59469665    T    C    143.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=28.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
2    132359357    rs57124140    T    C    173.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.07;MQ0=0;QD=28.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:206,18,0
2    132359416    rs13026912    G    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
2    132361453    rs6720928    T    C    213.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=35.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516147    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
2    132361518    rs6757779    G    A    1193.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516147    GT:AD:DP:GQ:PL    1/1:0,34:34:93.23:1227,93,0
2    132361543    rs6717542    A    G    2010.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516147    GT:AD:DP:GQ:PL    1/1:0,52:52:99:2044,147,0
2    132361854    rs10153598    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516147    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    132366923    rs1979998    G    T    4142.92    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.252;DB;DP=163;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=34.04;MQ0=9;MQRankSum=2.361;QD=25.42;ReadPosRankSum=-0.555;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:4,158:163:99:4143,315,0
2    132366994    rs1979997    A    G    5885.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=230;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8208;MQ=37.6;MQ0=8;QD=25.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,230:230:99:5885,511,0
2    132367062    rs113349055    G    GT    1415.31    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=96;FS=0.0;HRun=11;HaplotypeScore=428.8117;IndelType=I;MQ=48.82;MQ0=1;MQRankSum=0.216;QD=14.3;ReadPosRankSum=-0.664;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    0/1:40,57:96:99:1454,0,101
2    132368575    rs34671251    T    TTTAA    1002.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=50.468;IndelType=I;MQ=33.62;MQ0=2;QD=50.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:3,16:16:42.14:1045,42,0
2    132368971    rs13024022    C    T    548.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.82;MQ0=0;QD=34.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:582,45,0
2    132369178    rs6752868    T    C    8607    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6418;MQ=57.46;MQ0=0;QD=34.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8607,647,0
2    132369332    rs6743830    C    T    5387.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.02;MQ0=0;QD=36.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:1,145:146:99:5387,400,0
2    132369440    rs10754930    A    C    1089.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.65;MQ0=0;QD=36.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,30:30:90.26:1123,90,0
2    132369476    rs10754931    A    G    787.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.43;MQ0=0;QD=37.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:821,63,0
2    132381804    rs56236195    C    T    115.28    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.47;MQ0=0;MQRankSum=-0.529;QD=9.61;ReadPosRankSum=0.135;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    0/1:7,5:12:99:145,0,209
2    132381821    rs55988855    G    T    208.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.61;MQ0=0;QD=34.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
2    132384339    rs13011244    C    T    2677.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.221;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9298;MQ=58.95;MQ0=0;MQRankSum=-2.384;QD=30.09;ReadPosRankSum=-0.268;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:4,85:89:99:2711,133,0
2    132384381    rs12991373    G    A    1582.84    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=3.099;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.72;MQ0=0;MQRankSum=2.107;QD=17.02;ReadPosRankSum=0.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    0/1:41,52:93:99:1613,0,1205
2    132384588    rs13011674    C    G    2081.64    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.538;DB;DP=178;Dels=0.0;FS=7.598;HRun=0;HaplotypeScore=1.9385;MQ=56.62;MQ0=0;MQRankSum=2.228;QD=11.69;ReadPosRankSum=-0.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    0/1:98,80:178:99:2112,0,2796
2    132384682    rs12692060    T    C    4840.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=190;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.565;MQ=45.88;MQ0=4;QD=25.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,190:190:99:4841,397,0
2    132384683    rs12692061    T    G    4991.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=186;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.565;MQ=44.9;MQ0=5;QD=26.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POTEKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397487    GT:AD:DP:GQ:PL    1/1:0,186:186:99:4991,397,0
2    132491544    rs7599401    C    G    1859.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.03;MQ0=1;QD=30.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355171    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1893,141,0
2    132491708    rs10191790    G    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355171    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    132508859    rs75157466    A    G    41.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.21;MQ0=1;MQRankSum=-2.054;QD=4.18;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466372    GT:AD:DP:GQ:PL    0/1:6,4:10:71.81:72,0,226
2    132508861    rs79941793    T    G    44.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.21;MQ0=1;MQRankSum=-2.054;QD=4.4;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466372    GT:AD:DP:GQ:PL    0/1:6,4:10:74.02:74,0,221
2    132558335    rs12992187    G    T    326.47    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.57;MQ0=0;MQRankSum=1.357;QD=19.2;ReadPosRankSum=1.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf27B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303798    GT:AD:DP:GQ:PL    0/1:6,11:17:99:356,0,181
2    132586674    rs9282966    C    G    104.40    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.88;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC103564.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432853    GT:AD:DP:GQ:PL    0/1:1,4:5:20.21:134,0,20
2    132586953    rs7370086    C    T    71.03    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=8.88;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC103564.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432853    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,141
2    132860647    rs62164214    C    T    80.67    QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=101;Dels=0.0;FS=21.415;HRun=0;HaplotypeScore=9.3021;MQ=47.21;MQ0=0;MQRankSum=-5.901;QD=0.8;ReadPosRankSum=-1.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:83,18:101:99:111,0,2541
2    132860794    rs149354523    T    C    130.32    MQFilter40;QDFilter2    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.742;DB;DP=89;Dels=0.0;FS=5.885;HRun=0;HaplotypeScore=0.9159;MQ=33.11;MQ0=3;MQRankSum=-4.263;QD=1.46;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:65,24:89:99:160,0,1750
2    132860798    .    C    T    70.90    MQFilter40;QDFilter2    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.879;DP=89;Dels=0.0;FS=3.739;HRun=0;HaplotypeScore=0.9998;MQ=31.99;MQ0=5;MQRankSum=-4.338;QD=0.8;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:66,23:89:99:101,0,1686
2    132861547    .    T    A    156.85    MQFilter40;QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=2.965;DP=188;Dels=0.0;FS=9.863;HRun=2;HaplotypeScore=0.0;MQ=17.1;MQ0=84;MQRankSum=0.177;QD=0.83;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:155,32:188:99:187,0,1584
2    132861599    rs62164215    G    T    349.75    MQFilter40;QDFilter2    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=188;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.0;MQ=13.8;MQ0=121;MQRankSum=-0.955;QD=1.86;ReadPosRankSum=0.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:122,66:188:99:380,0,680
2    132861606    .    G    A    412.65    MQFilter40    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.818;DP=192;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=0.0;MQ=14.82;MQ0=118;MQRankSum=-0.506;QD=2.15;ReadPosRankSum=0.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:124,68:192:99:443,0,748
2    132861700    rs75693475    G    C    991.67    MQFilter40    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=197;Dels=0.0;FS=16.865;HRun=0;HaplotypeScore=2.6639;MQ=30.03;MQ0=65;MQRankSum=-0.258;QD=5.03;ReadPosRankSum=0.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:125,72:197:99:1022,0,2085
2    132861737    rs72483724    G    A    1260.14    MQFilter40    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.591;DB;DP=154;Dels=0.0;FS=21.704;HRun=2;HaplotypeScore=2.7822;MQ=37.43;MQ0=22;MQRankSum=-1.172;QD=8.18;ReadPosRankSum=0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:96,56:154:99:1290,0,2463
2    132861786    rs74206111    C    A    349.21    MQFilter40    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.126;DB;DP=110;Dels=0.0;FS=15.356;HRun=0;HaplotypeScore=1.9733;MQ=39.45;MQ0=0;MQRankSum=-0.388;QD=3.17;ReadPosRankSum=0.167;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC098826.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433943    GT:AD:DP:GQ:PL    0/1:89,21:110:99:379,0,2510
2    132905579    .    G    T    216.82    MQFilter40    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.664;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.26;MQ0=6;MQRankSum=-1.668;QD=4.71;ReadPosRankSum=0.339;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465868    GT:AD:DP:GQ:PL    0/1:28,18:46:99:247,0,760
2    132905601    .    T    C    227.19    MQFilter40    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=3.636;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5003;MQ=39.36;MQ0=7;MQRankSum=-3.464;QD=3.16;ReadPosRankSum=1.347;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465868    GT:AD:DP:GQ:PL    0/1:50,22:72:99:257,0,1546
2    132905626    .    A    G    285.70    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.796;DP=104;Dels=0.0;FS=4.709;HRun=0;HaplotypeScore=0.0;MQ=41.7;MQ0=7;MQRankSum=-5.837;QD=2.75;ReadPosRankSum=-1.032;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465868    GT:AD:DP:GQ:PL    0/1:72,32:104:99:316,0,2396
2    132905664    .    G    T    176.48    QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.321;DP=177;Dels=0.0;FS=11.472;HRun=3;HaplotypeScore=12.8627;MQ=46.69;MQ0=6;MQRankSum=-7.241;QD=1.0;ReadPosRankSum=0.141;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465868    GT:AD:DP:GQ:PL    0/1:143,34:177:99:206,0,4303
2    132905682    .    T    C    395.34    QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=0.519;DP=222;Dels=0.0;FS=3.351;HRun=0;HaplotypeScore=2.0463;MQ=47.05;MQ0=5;MQRankSum=-7.679;QD=1.78;ReadPosRankSum=-4.663;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465868    GT:AD:DP:GQ:PL    0/1:174,48:222:99:425,0,5127
2    132905693    rs150889759    T    C    354.53    QDFilter2    AB=0.799;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=234;Dels=0.0;FS=4.633;HRun=0;HaplotypeScore=3.1751;MQ=48.02;MQ0=5;MQRankSum=-7.035;QD=1.52;ReadPosRankSum=-3.705;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465868    GT:AD:DP:GQ:PL    0/1:187,47:234:99:385,0,5520
2    132905703    rs144342094    C    G    423.50    QDFilter2    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.267;DB;DP=247;DS;Dels=0.0;FS=13.133;HRun=0;HaplotypeScore=2.6515;MQ=48.28;MQ0=3;MQRankSum=-7.859;QD=1.71;ReadPosRankSum=-3.307;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465868    GT:AD:DP:GQ:PL    0/1:195,52:247:99:453,0,6024
2    132905706    rs142209162    A    G    432.84    QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=2.03;DB;DP=250;DS;Dels=0.0;FS=31.047;HRun=0;HaplotypeScore=1.581;MQ=48.31;MQ0=3;MQRankSum=-7.132;QD=1.73;ReadPosRankSum=-3.306;SNPEFF_AMINO_ACID_CHANGE=*259Q;SNPEFF_CODON_CHANGE=Tag/Cag;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_2_132905480_132905801;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000409867    GT:AD:DP:GQ:PL    0/1:196,54:250:99:463,0,5902
2    132905741    rs111770980    G    A    516.19    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=5.317;DB;DP=250;DS;Dels=0.0;FS=17.634;HRun=0;HaplotypeScore=2.5585;MQ=49.41;MQ0=1;MQRankSum=-7.813;QD=2.06;ReadPosRankSum=4.143;SNPEFF_AMINO_ACID_CHANGE=T247M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132905480_132905801;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409867    GT:AD:DP:GQ:PL    0/1:200,50:250:99:546,0,5626
2    132905792    rs189049364    G    C    75.97    QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.404;DB;DP=175;DS;Dels=0.0;FS=3.792;HRun=0;HaplotypeScore=3.0564;MQ=52.58;MQ0=2;MQRankSum=-6.566;QD=0.43;ReadPosRankSum=-4.095;SNPEFF_AMINO_ACID_CHANGE=S230C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132905480_132905801;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409867    GT:AD:DP:GQ:PL    0/1:149,25:175:99:106,0,4880
2    132914561    rs79828184    G    A    790.44    MQFilter40    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=5.75;DB;DP=250;DS;Dels=0.0;FS=17.102;HRun=1;HaplotypeScore=1.9849;MQ=39.69;MQ0=53;MQRankSum=-10.131;QD=3.16;ReadPosRankSum=-0.93;SNPEFF_AMINO_ACID_CHANGE=I164;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_132914546_132914719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409867    GT:AD:DP:GQ:PL    0/1:143,107:250:99:820,0,4142
2    133014431    rs72869460    C    T    34.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.86;MQ0=0;MQRankSum=0.736;QD=11.55;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470729    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:65,0,32
2    133014476    rs62165008    A    G    37.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.21;MQ0=0;MQRankSum=-0.358;QD=7.6;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470729    GT:AD:DP:GQ:PL    0/1:2,3:5:58.83:68,0,59
2    133014497    .    G    C    74.93    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=54.59;MQ0=0;MQRankSum=-1.92;QD=9.37;ReadPosRankSum=-0.956;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470729    GT:AD:DP:GQ:PL    0/1:3,5:8:90.89:105,0,91
2    133014504    rs79813268    G    T    74.92    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.9789;MQ=54.59;MQ0=0;MQRankSum=-1.92;QD=9.37;ReadPosRankSum=-0.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470729    GT:AD:DP:GQ:PL    0/1:3,5:8:99:105,0,104
2    133014510    rs9287404    T    C    61.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.9789;MQ=55.22;MQ0=0;MQRankSum=-0.55;QD=8.81;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470729    GT:AD:DP:GQ:PL    0/1:3,4:7:91.69:92,0,107
2    133014602    rs75245503    G    C    30.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.38;MQ0=0;MQRankSum=-1.754;QD=3.84;ReadPosRankSum=-0.937;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470729    GT:AD:DP:GQ:PL    0/1:4,4:8:60.74:61,0,132
2    133014612    rs74853538    A    C    64.92    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=47.91;MQ0=0;MQRankSum=-2.219;QD=5.9;ReadPosRankSum=-0.729;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD30BL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470729    GT:AD:DP:GQ:PL    0/1:5,6:11:94.91:95,0,155
2    133066642    rs2598822    T    C    32.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-1.231;QD=6.53;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:3,2:5:62.63:63,0,74
2    133066724    rs140656838    AGAT    A    307.67    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=60.9271;IndelType=D;MQ=50.0;MQ0=0;MQRankSum=-1.239;QD=21.98;ReadPosRankSum=1.932;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:5,9:13:99:347,0,216
2    133066879    rs2677610    G    A    1067.22    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=4.799;DB;DP=103;Dels=0.0;FS=4.006;HRun=0;HaplotypeScore=2.6297;MQ=52.99;MQ0=1;MQRankSum=-3.031;QD=10.36;ReadPosRankSum=0.581;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:56,47:103:99:1097,0,1549
2    133066967    rs57269088    A    AGGT    1092.95    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.958;DB;DP=54;FS=0.0;HRun=0;HaplotypeScore=253.7626;IndelType=I;MQ=48.87;MQ0=0;MQRankSum=-4.159;QD=17.35;ReadPosRankSum=2.757;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:36,27:54:99:1132,0,1429
2    133067025    rs2459643    C    G    170.99    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4551;MQ=50.01;MQ0=0;MQRankSum=-2.341;QD=5.34;ReadPosRankSum=-0.079;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:21,11:32:99:201,0,674
2    133067049    rs2443274    T    C    407.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.94;MQ0=0;QD=25.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:441,36,0
2    133067122    rs2598821    A    G    47.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=11.88;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:1,3:4:24.41:77,0,24
2    133074683    rs7355726    T    C    601.05    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=43;Dels=0.0;FS=1.571;HRun=0;HaplotypeScore=0.9734;MQ=50.99;MQ0=1;MQRankSum=-3.74;QD=13.98;ReadPosRankSum=1.725;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:20,23:43:99:631,0,592
2    133074718    rs4953961    A    C    899.95    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.403;DB;DP=58;Dels=0.0;FS=2.605;HRun=0;HaplotypeScore=0.8941;MQ=47.23;MQ0=2;MQRankSum=-3.805;QD=15.52;ReadPosRankSum=-1.898;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:21,37:58:99:930,0,680
2    133074727    rs74763985    T    G    990.24    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.792;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=46.83;MQ0=2;MQRankSum=-5.218;QD=15.0;ReadPosRankSum=-1.577;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:24,42:66:99:1020,0,735
2    133074745    rs7355686    A    T    1082.32    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.988;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=47.69;MQ0=2;MQRankSum=-5.065;QD=15.24;ReadPosRankSum=0.532;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:28,43:71:99:1112,0,845
2    133074759    rs62169564    A    C    1148.69    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.581;DB;DP=80;Dels=0.0;FS=2.022;HRun=0;HaplotypeScore=2.7477;MQ=48.93;MQ0=2;MQRankSum=-5.879;QD=14.36;ReadPosRankSum=2.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:36,44:80:99:1179,0,1104
2    133074851    rs7355688    A    T    1367.32    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=3.424;DB;DP=98;Dels=0.0;FS=3.836;HRun=1;HaplotypeScore=3.7088;MQ=55.79;MQ0=0;MQRankSum=-1.439;QD=13.95;ReadPosRankSum=-0.321;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:48,50:98:99:1397,0,1496
2    133074876    rs7355689    A    G    1278.42    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.428;DB;DP=91;Dels=0.0;FS=1.787;HRun=0;HaplotypeScore=0.0;MQ=57.08;MQ0=0;MQRankSum=0.572;QD=14.05;ReadPosRankSum=-0.202;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:41,50:91:99:1308,0,1281
2    133075027    rs7349198    G    A    1320.21    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.845;DB;DP=104;Dels=0.0;FS=9.736;HRun=2;HaplotypeScore=1.7608;MQ=59.39;MQ0=0;MQRankSum=0.064;QD=12.69;ReadPosRankSum=1.733;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:55,48:104:99:1350,0,1778
2    133075069    rs72991565    A    G    576.13    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.56;DB;DP=83;Dels=0.0;FS=2.106;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.28;QD=6.94;ReadPosRankSum=0.888;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:60,23:83:99:606,0,2015
2    133075104    rs7349364    C    T    850.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.78;DB;DP=70;Dels=0.0;FS=4.834;HRun=0;HaplotypeScore=0.9958;MQ=58.99;MQ0=0;MQRankSum=-0.777;QD=12.16;ReadPosRankSum=-0.077;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:40,30:70:99:881,0,1121
2    133075207    rs7349365    C    T    754.99    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DB;DP=72;Dels=0.0;FS=2.1;HRun=0;HaplotypeScore=0.9578;MQ=58.32;MQ0=0;MQRankSum=-1.366;QD=10.49;ReadPosRankSum=-0.029;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF806;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424130    GT:AD:DP:GQ:PL    0/1:46,26:72:99:785,0,1434
2    133402607    rs1131671    C    T    517.26    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=23;Dels=0.0;FS=10.414;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=22.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345008    GT:AD:DP:GQ:PL    0/1:8,15:23:99:547,0,229
2    133403433    rs10179785    G    A    31.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470071    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
2    133425912    rs2709533    C    T    583.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:616,48,0
2    133426183    rs2709532    G    C    326.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:359,27,0
2    133489401    rs17397142    A    G    912.07    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=68;Dels=0.0;FS=0.945;HRun=0;HaplotypeScore=0.9997;MQ=59.45;MQ0=0;MQRankSum=0.797;QD=13.41;ReadPosRankSum=0.985;SNPEFF_AMINO_ACID_CHANGE=D1784;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133489310_133489624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:36,32:68:99:942,0,1054
2    133489601    rs56284623    A    G    897.95    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=69;Dels=0.0;FS=1.981;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=1.903;QD=13.01;ReadPosRankSum=1.586;SNPEFF_AMINO_ACID_CHANGE=L1718;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133489310_133489624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:40,29:69:99:928,0,1241
2    133539375    rs12991144    T    A    557.02    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=2.768;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.993;QD=17.97;ReadPosRankSum=1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:10,21:31:99:587,0,323
2    133539460    rs6717116    A    T    1447.56    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.608;DB;DP=128;Dels=0.0;FS=1.333;HRun=4;HaplotypeScore=2.5568;MQ=59.82;MQ0=0;MQRankSum=-1.121;QD=11.31;ReadPosRankSum=-1.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:67,61:128:99:1478,0,2261
2    133539566    rs6730282    G    A    3304.59    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.249;DB;DP=250;DS;Dels=0.0;FS=0.465;HRun=0;HaplotypeScore=1.7337;MQ=59.74;MQ0=0;MQRankSum=0.475;QD=13.22;ReadPosRankSum=-0.76;SNPEFF_AMINO_ACID_CHANGE=H1606;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133539513_133543291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:137,113:250:99:3305,0,4372
2    133540605    rs13016342    G    T    1961.69    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.552;DB;DP=119;Dels=0.0;FS=7.27;HRun=1;HaplotypeScore=0.734;MQ=59.61;MQ0=0;MQRankSum=0.243;QD=16.48;ReadPosRankSum=1.083;SNPEFF_AMINO_ACID_CHANGE=P1260Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133539513_133543291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:57,62:119:99:1992,0,1725
2    133541444    rs12691829    T    C    1451.44    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=91;Dels=0.0;FS=4.088;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.367;QD=15.95;ReadPosRankSum=0.994;SNPEFF_AMINO_ACID_CHANGE=P980;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133539513_133543291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:41,50:91:99:1481,0,1303
2    133541454    rs12691830    A    G    1466.92    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=88;Dels=0.0;FS=2.929;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.554;QD=16.67;ReadPosRankSum=-0.527;SNPEFF_AMINO_ACID_CHANGE=I977T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133539513_133543291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:36,52:88:99:1497,0,1184
2    133541575    rs12611515    C    T    587.27    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.433;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.57;MQ0=0;MQRankSum=0.599;QD=13.66;ReadPosRankSum=-1.113;SNPEFF_AMINO_ACID_CHANGE=V937I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133539513_133543291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:24,19:43:99:617,0,722
2    133542014    rs12616282    T    C    2512.84    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.785;DB;DP=199;Dels=0.0;FS=7.258;HRun=0;HaplotypeScore=7.1875;MQ=59.77;MQ0=0;MQRankSum=-1.943;QD=12.63;ReadPosRankSum=-1.066;SNPEFF_AMINO_ACID_CHANGE=A790;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133539513_133543291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:101,97:199:99:2543,0,3036
2    133542545    rs10191147    G    A    1882.76    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=4.679;DB;DP=114;Dels=0.0;FS=0.72;HRun=0;HaplotypeScore=0.9159;MQ=59.6;MQ0=0;MQRankSum=0.066;QD=16.52;ReadPosRankSum=1.571;SNPEFF_AMINO_ACID_CHANGE=S613;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133539513_133543291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:56,58:114:99:1913,0,1640
2    133542585    rs17325719    C    G    1494.57    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=112;Dels=0.0;FS=2.494;HRun=0;HaplotypeScore=1.6988;MQ=59.42;MQ0=0;MQRankSum=0.174;QD=13.34;ReadPosRankSum=-1.251;SNPEFF_AMINO_ACID_CHANGE=S600T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133539513_133543291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:62,50:112:99:1525,0,1920
2    133554288    rs1868076    A    G    1028.02    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.879;DB;DP=76;Dels=0.0;FS=1.888;HRun=1;HaplotypeScore=1.6649;MQ=60.0;MQ0=0;MQRankSum=-0.357;QD=13.53;ReadPosRankSum=1.687;SNPEFF_AMINO_ACID_CHANGE=R274;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_133554201_133554302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:41,34:76:99:1058,0,1307
2    133618220    rs1447549    A    G    202.51    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=2.728;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9011;MQ=59.57;MQ0=0;MQRankSum=0.638;QD=3.75;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:42,11:54:99:233,0,1360
2    133618332    rs1447548    G    T    35.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.9;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:4,2:6:65.40:65,0,147
2    133618363    rs1447547    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    133626706    rs17326258    T    C    30.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:1,2:3:32.74:61,0,33
2    133721169    rs76742066    T    C    227.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.347;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.582;QD=11.37;ReadPosRankSum=-0.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:12,8:20:99:257,0,420
2    133881425    rs2278457    G    A    81.16    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.371;DB;DP=15;Dels=0.0;FS=2.869;HRun=1;HaplotypeScore=0.8667;MQ=58.75;MQ0=0;MQRankSum=0.588;QD=5.41;ReadPosRankSum=-0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:11,4:15:99:111,0,378
2    133971448    rs13393624    T    A    212.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.6;QD=17.73;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:4,8:12:83.36:243,0,83
2    134060719    rs7604084    T    C    930.29    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.208;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.73;MQ0=0;MQRankSum=-1.15;QD=10.94;ReadPosRankSum=-1.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317721    GT:AD:DP:GQ:PL    0/1:47,37:85:99:960,0,1515
2    135076046    rs4954132    T    G    419.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MGAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281923    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:453,36,0
2    135076090    rs4954133    C    T    778.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MGAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281923    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:812,60,0
2    135076111    rs4954134    C    G    1155.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=58.13;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MGAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281923    GT:AD:DP:GQ:PL    1/1:0,35:35:96.29:1189,96,0
2    135095637    rs12621027    C    G    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MGAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281923    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
2    135096097    rs7598410    T    C    387.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MGAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281923    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:420,33,0
2    135160755    rs3748900    G    A    207.99    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=29;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=7.17;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MGAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281923    GT:AD:DP:GQ:PL    0/1:20,9:29:99:238,0,715
2    135629927    rs12469941    C    T    58.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=11.71;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACMSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283054    GT:AD:DP:GQ:PL    0/1:2,3:5:59.65:89,0,60
2    135677471    rs3841862    A    AGTTT    2195.39    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.218;DB;DP=70;FS=0.0;HRun=0;HaplotypeScore=250.0415;IndelType=I;MQ=57.55;MQ0=0;MQRankSum=0.132;QD=30.92;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264157    GT:AD:DP:GQ:PL    0/1:41,30:70:99:2234,0,1829
2    135694354    rs1823118    G    C    241.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=16.13;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264157    GT:AD:DP:GQ:PL    0/1:6,8:15:99:272,0,197
2    135694379    rs1374289    C    T    319.54    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DB;DP=21;Dels=0.0;FS=3.136;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.675;QD=15.22;ReadPosRankSum=-1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264157    GT:AD:DP:GQ:PL    0/1:9,12:21:99:350,0,316
2    135700151    rs3816339    A    T    242.06    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=25;Dels=0.0;FS=2.054;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.56;QD=9.68;ReadPosRankSum=0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264157    GT:AD:DP:GQ:PL    0/1:14,11:25:99:272,0,439
2    135710322    rs10166142    A    G    1580.52    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.617;QD=16.29;ReadPosRankSum=-0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264157    GT:AD:DP:GQ:PL    0/1:48,49:97:99:1611,0,1552
2    135711516    rs3814355    C    T    752.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=50;Dels=0.0;FS=1.093;HRun=0;HaplotypeScore=0.9832;MQ=59.25;MQ0=0;MQRankSum=-1.75;QD=15.04;ReadPosRankSum=-0.41;SNPEFF_AMINO_ACID_CHANGE=D322;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_135710800_135711949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCNT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537343    GT:AD:DP:GQ:PL    0/1:25,25:50:99:782,0,860
2    135711657    rs3814354    G    A    1593.66    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.808;DB;DP=101;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.94;MQ0=0;MQRankSum=-0.279;QD=15.78;ReadPosRankSum=1.147;SNPEFF_AMINO_ACID_CHANGE=K369;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_135710800_135711949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCNT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537343    GT:AD:DP:GQ:PL    0/1:44,57:101:99:1624,0,1247
2    135740863    rs79960383    C    A    2991.88    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.21;DB;DP=181;Dels=0.0;FS=0.671;HRun=0;HaplotypeScore=0.9997;MQ=59.79;MQ0=0;MQRankSum=-0.181;QD=16.53;ReadPosRankSum=-2.844;SNPEFF_AMINO_ACID_CHANGE=Q1104H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_135740750_135740901;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YSK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392915    GT:AD:DP:GQ:PL    0/1:82,99:181:99:3022,0,2584
2    135741061    rs12623713    G    A    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.82;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YSK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315513    GT:AD:DP:GQ:PL    0/1:4,2:6:64.93:65,0,144
2    135741425    rs16831223    C    A    536.31    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.636;DB;DP=57;Dels=0.0;FS=1.261;HRun=1;HaplotypeScore=1.3123;MQ=58.78;MQ0=0;MQRankSum=0.294;QD=9.41;ReadPosRankSum=-1.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YSK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315513    GT:AD:DP:GQ:PL    0/1:35,22:57:99:566,0,1082
2    135744007    rs3905317    T    C    881.28    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.43;DB;DP=66;Dels=0.0;FS=8.59;HRun=1;HaplotypeScore=0.9987;MQ=59.65;MQ0=0;MQRankSum=-0.638;QD=13.35;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=E202G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_135743370_135744611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YSK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437365    GT:AD:DP:GQ:PL    0/1:32,34:66:99:911,0,1071
2    135744416    rs1112542    C    G    1579.93    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.814;DB;DP=103;Dels=0.0;FS=6.251;HRun=0;HaplotypeScore=1.367;MQ=59.78;MQ0=0;MQRankSum=0.657;QD=15.34;ReadPosRankSum=-0.769;SNPEFF_AMINO_ACID_CHANGE=E563Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_135743370_135745823;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YSK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358371    GT:AD:DP:GQ:PL    0/1:50,53:103:99:1610,0,1610
2    135745545    rs11899779    C    T    704.71    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.936;DB;DP=46;Dels=0.0;FS=1.113;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.011;QD=15.32;ReadPosRankSum=-0.341;SNPEFF_AMINO_ACID_CHANGE=R186;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_135743370_135745823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YSK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358371    GT:AD:DP:GQ:PL    0/1:22,24:46:99:735,0,718
2    135745722    rs10928526    A    G    2111.80    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=2.897;DB;DP=123;Dels=0.0;FS=0.719;HRun=1;HaplotypeScore=3.8363;MQ=60.0;MQ0=0;MQRankSum=0.069;QD=17.17;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=S127;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_135743370_135745823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YSK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358371    GT:AD:DP:GQ:PL    0/1:55,68:123:99:2142,0,1645
2    136467164    rs2304367    C    A    465.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HDM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264160    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:498,39,0
2    136511575    rs3213889    A    G    205.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272638    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:239,21,0
2    136527443    rs113881162    G    GTGAT    3486.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.525;DB;DP=64;FS=9.208;HRun=0;HaplotypeScore=203.7113;IndelType=I;MQ=53.61;MQ0=1;MQRankSum=0.069;QD=53.65;ReadPosRankSum=0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272638    GT:AD:DP:GQ:PL    1/1:16,46:64:97.49:3487,97,0
2    136545844    rs1042712    C    G    4909.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=59.47;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272638    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4910,364,0
2    136546110    rs2278544    A    G    2913.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=59.74;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=A1856;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_136545410_136546114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,89:90:99:2947,223,0
2    136548116    rs892717    G    C    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452974    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    136548169    rs892716    A    G    247.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452974    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:281,21,0
2    136548192    rs1808756    G    A    497.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452974    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:530,42,0
2    136552512    rs76196399    A    AC    227.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=21.6032;IndelType=I;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455227    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:270,18,0
2    136552526    rs3816155    A    C    76.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
2    136555659    rs2322659    T    C    1818.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.14;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=N1639S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_136555599_136555708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1852,138,0
2    136558157    rs748841    C    T    1233.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1267,96,0
2    136561557    rs2304371    G    A    937.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.619;DB;DP=28;Dels=0.0;FS=4.058;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.609;QD=33.47;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=L1536;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_136561500_136561698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:1,27:28:38.25:970,38,0
2    136565028    rs10928549    C    G    1276.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,41:41:96.32:1309,96,0
2    136567633    rs6430591    A    G    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
2    136569848    rs12988076    C    A    1866.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1899,147,0
2    136575199    rs6719488    G    T    902.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=G473;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_136574911_136575631;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:936,69,0
2    136575534    rs4954449    T    C    2675.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.44;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=I362V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_136574911_136575631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2708,202,0
2    136581354    rs895284    T    G    167.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
2    136586958    rs10186843    C    A    78.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
2    136594158    rs2236783    G    A    1759.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=T194;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_136594100_136594750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264162    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1793,132,0
2    136602246    .    C    T    899.23    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.198;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.446;QD=15.78;ReadPosRankSum=1.239;SNPEFF_AMINO_ACID_CHANGE=E740K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_136602115_136602254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264156    GT:AD:DP:GQ:PL    0/1:30,27:57:99:929,0,820
2    136610598    rs4988226    A    G    404.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264156    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:438,36,0
2    136614255    rs309180    G    A    1052.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264156    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1086,78,0
2    136616754    rs182549    C    T    120.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264156    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
2    136622825    rs309177    A    G    767.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264156    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:800,60,0
2    136873549    rs2680880    A    T    466.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241393    GT:AD:DP:GQ:PL    1/1:0,24:24:51.07:500,51,0
2    137402954    rs1446102    A    C    1453.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092786.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408835    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1486,114,0
2    137639616    rs1465612    C    T    1103.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409968    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1136,84,0
2    137640006    rs11298935    CT    C    421.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=8;HaplotypeScore=41.304;IndelType=D;MQ=60.0;MQ0=0;QD=24.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    1/1:1,16:17:48.08:464,48,0
2    137814477    rs17727482    C    G    4570.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.59;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=P178;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_137813990_137814800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413152    GT:AD:DP:GQ:PL    1/1:2,145:147:99:4571,382,0
2    137872992    rs745908    A    G    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    137917922    rs4954474    T    A    3153.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=D472E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_137917783_137917938;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413152    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3186,244,0
2    138000226    rs7605259    T    C    967.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.899;MQ=59.49;MQ0=0;QD=21.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    1/1:0,45:45:96.16:1000,96,0
2    138163391    rs1551281    T    C    1984.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DB;DP=64;Dels=0.0;FS=4.934;HRun=0;HaplotypeScore=1.4942;MQ=59.71;MQ0=0;MQRankSum=-0.135;QD=31.0;ReadPosRankSum=-0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    1/1:2,62:64:99:2017,156,0
2    138163542    rs1551280    A    T    171.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:205,15,0
2    138169158    rs1463285    T    C    4898.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.685;QD=33.1;ReadPosRankSum=0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    1/1:2,146:148:99:4898,324,0
2    138208631    rs1453302    G    T    1177.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    1/1:0,36:36:93.27:1210,93,0
2    138378351    rs58339575    AG    A    2010.85    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=8.274;DB;DP=116;FS=2.008;HRun=1;HaplotypeScore=412.8767;IndelType=D;MQ=60.29;MQ0=0;MQRankSum=0.754;QD=17.33;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    0/1:59,57:116:99:2050,0,2362
2    138378388    rs1448922    A    G    1014.82    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=5.281;DB;DP=67;Dels=0.0;FS=3.08;HRun=3;HaplotypeScore=0.5784;MQ=59.86;MQ0=0;MQRankSum=-1.004;QD=15.15;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    0/1:33,34:67:99:1045,0,1045
2    138420996    rs10206850    A    G    2439.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.73;MQ0=0;QD=35.35;SNPEFF_AMINO_ACID_CHANGE=K1473R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_138420953_138421145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413152    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2472,187,0
2    138434431    rs76999641    T    C    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THSD7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272643    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
2    139308397    rs3086067    T    TTC    324.02    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.168;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=93.7348;IndelType=I;MQ=57.56;MQ0=0;MQRankSum=-0.036;QD=12.0;ReadPosRankSum=1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280098    GT:AD:DP:GQ:PL    0/1:18,9:27:99:363,0,358
2    139318315    rs66551604    T    C    374.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.31;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.817;QD=17.82;ReadPosRankSum=0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280098    GT:AD:DP:GQ:PL    0/1:9,12:21:99:404,0,298
2    139322129    rs16840717    G    A    250.95    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.533;QD=19.3;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280098    GT:AD:DP:GQ:PL    0/1:5,8:13:99:281,0,133
2    139326879    rs2889266    G    C    129.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420679    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
2    139429068    rs10803570    G    A    3973.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=59.8;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=Y73;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_139428342_139429235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXPH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272641    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3974,301,0
2    139429286    rs60855564    C    T    902.39    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=4.167;DB;DP=55;Dels=0.0;FS=1.519;HRun=0;HaplotypeScore=1.9157;MQ=59.58;MQ0=0;MQRankSum=0.497;QD=16.41;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272641    GT:AD:DP:GQ:PL    0/1:28,27:55:99:932,0,823
2    140584027    rs9789641    T    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC078851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415918    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    140992337    rs13387241    C    A    331.78    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.957;DB;DP=24;Dels=0.0;FS=3.949;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.732;QD=13.82;ReadPosRankSum=-1.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:10,14:24:99:362,0,295
2    141004513    rs11895946    C    T    126.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
2    141004529    rs2129483    A    G    146.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:179,15,0
2    141026986    rs12477489    G    A    884.36    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=1.627;DB;DP=55;Dels=0.0;FS=10.237;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.11;QD=16.08;ReadPosRankSum=0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:26,29:55:99:914,0,726
2    141027159    rs7581796    T    C    69.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,146
2    141032088    rs1386356    C    T    677.10    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=47;Dels=0.0;FS=1.184;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.069;QD=14.41;ReadPosRankSum=1.827;SNPEFF_AMINO_ACID_CHANGE=T4287;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_141031993_141032167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544579    GT:AD:DP:GQ:PL    0/1:21,26:47:99:707,0,553
2    141083159    rs654051    T    G    68.03    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.61;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:2,3:5:28.61:98,0,29
2    141113798    rs13017246    G    A    240.20    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.269;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=0.244;QD=14.13;ReadPosRankSum=2.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:7,10:17:99:270,0,232
2    141130501    rs77729177    T    C    899.74    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DB;DP=58;Dels=0.0;FS=6.189;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.281;QD=15.51;ReadPosRankSum=1.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:31,27:58:99:930,0,1097
2    141201763    rs4992954    T    C    554.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:1,15:16:45.14:588,45,0
2    141253408    rs11683334    T    C    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    141260668    rs4444457    A    G    637.38    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=-0.539;QD=13.86;ReadPosRankSum=-0.385;SNPEFF_AMINO_ACID_CHANGE=Y2780;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_141260532_141260672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544579    GT:AD:DP:GQ:PL    0/1:24,22:46:99:667,0,760
2    141267744    rs1948051    T    C    333.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:367,33,0
2    141272057    rs6430906    T    A    75.88    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.97;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:106,0,21
2    141274295    rs1542655    C    T    32.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=6.41;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:2,3:5:62.04:62,0,74
2    141274576    rs4954672    T    C    1127.35    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.354;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.67;MQ0=0;MQRankSum=0.905;QD=16.34;ReadPosRankSum=-0.069;SNPEFF_AMINO_ACID_CHANGE=Q2615;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_141274458_141274580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544579    GT:AD:DP:GQ:PL    0/1:25,44:69:99:1157,0,772
2    141283603    rs1352047    T    G    397.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:430,33,0
2    141284041    rs7562323    A    G    122.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
2    141291841    rs10928755    T    A    74.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:2,4:6:62.75:104,0,63
2    141291878    rs11695464    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
2    141294285    .    G    GA    102.38    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.342;DP=39;FS=5.228;HRun=13;HaplotypeScore=150.9119;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=-0.171;QD=2.63;ReadPosRankSum=-1.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:25,10:39:99:141,0,276
2    141298467    rs6729619    A    C    555.92    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.137;DB;DP=37;Dels=0.0;FS=2.191;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.17;QD=15.02;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:18,19:37:99:586,0,604
2    141298674    rs13013854    T    C    380.74    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=3.375;DB;DP=38;Dels=0.0;FS=6.671;HRun=0;HaplotypeScore=0.8941;MQ=58.9;MQ0=0;MQRankSum=1.463;QD=10.02;ReadPosRankSum=0.687;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:23,15:38:99:411,0,774
2    141298682    rs11694934    G    C    305.68    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.64;DB;DP=33;Dels=0.0;FS=7.389;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.313;QD=9.26;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:20,13:33:99:336,0,704
2    141298749    rs11694970    G    C    102.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.18;QD=8.52;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:8,4:12:99:132,0,287
2    141299317    rs9287535    A    G    934.62    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.615;DB;DP=61;Dels=0.0;FS=3.937;HRun=0;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=15.32;ReadPosRankSum=-1.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:28,33:61:99:965,0,955
2    141457904    .    G    A    1753.07    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.216;DP=112;Dels=0.0;FS=2.496;HRun=0;HaplotypeScore=3.3271;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=15.65;ReadPosRankSum=0.021;SNPEFF_AMINO_ACID_CHANGE=T2176;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_141457819_141458190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544579    GT:AD:DP:GQ:PL    0/1:52,60:112:99:1783,0,1522
2    141527013    rs13002947    A    G    72.09    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=8.01;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:6,3:9:99:102,0,188
2    141527190    rs10928069    A    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    141528592    rs7599219    T    C    499.02    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.078;DB;DP=38;Dels=0.0;FS=1.854;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.623;QD=13.13;ReadPosRankSum=-0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:18,20:38:99:529,0,561
2    141533573    rs13009144    A    G    56.34    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.63;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:7,3:10:86.33:86,0,249
2    141533662    rs996361    T    C    613.16    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.119;QD=17.52;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:13,22:35:99:643,0,434
2    141570937    rs3828265    G    T    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    141571329    rs3749010    T    C    2096.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=S1690;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_141571226_141571375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544579    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2130,175,0
2    141571440    rs17575847    C    G    529.04    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=2.468;DB;DP=33;Dels=0.0;FS=6.435;HRun=0;HaplotypeScore=3.5579;MQ=60.0;MQ0=0;MQRankSum=-0.558;QD=16.03;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:17,16:33:99:559,0,498
2    141571456    rs78112099    G    GA    254.34    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.752;DB;DP=25;FS=0.0;HRun=7;HaplotypeScore=129.9789;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=10.17;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:15,10:25:99:293,0,307
2    141571480    rs17575875    A    G    250.47    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=14.73;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:9,8:17:99:280,0,315
2    141598473    rs35745624    A    AT    1913.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=106.0632;IndelType=I;MQ=61.07;MQ0=0;QD=39.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:1,48:49:99:1955,144,0
2    141625410    rs12987572    A    C    537.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.591;DB;DP=38;Dels=0.0;FS=3.35;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.029;QD=14.15;ReadPosRankSum=0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:19,19:38:99:568,0,629
2    141707694    rs1980343    C    T    233.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:267,21,0
2    141709419    rs1429348    T    G    781.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:814,66,0
2    141762830    rs13413663    C    T    628.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:661,51,0
2    141771058    rs3791766    T    A    910.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=37.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:943,72,0
2    141777763    rs12615322    G    T    365.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:399,30,0
2    141806410    rs2140871    A    C    367.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
2    141816621    rs1525579    A    G    2863.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=V351;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_141816452_141816623;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544579    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2896,214,0
2    141816731    rs1525580    C    T    149.11    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.23;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=59.14;MQ0=0;MQRankSum=1.08;QD=5.52;ReadPosRankSum=-0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:17,10:27:99:179,0,629
2    141945949    rs1249434    C    T    1498.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1532,111,0
2    142012027    rs431809    G    T    419.64    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.657;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.783;QD=11.34;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:23,14:37:99:450,0,613
2    142012301    rs373757    T    C    67.15    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.79;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:97,0,30
2    142237868    rs4264514    G    A    102.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=10.24;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,222
2    142567737    rs4996425    G    A    92.49    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.278;QD=8.41;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:7,4:11:99:122,0,211
2    142567738    rs28529494    G    T    167.06    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.034;QD=15.19;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389484    GT:AD:DP:GQ:PL    0/1:4,7:11:99:197,0,127
2    143746494    rs10496935    C    G    606.18    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=30;Dels=0.0;FS=1.9;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=20.21;ReadPosRankSum=1.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KYNU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264170    GT:AD:DP:GQ:PL    0/1:11,19:30:99:636,0,372
2    143763491    rs694239    A    G    1059.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KYNU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264170    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1092,81,0
2    143787161    rs6429999    C    A    112.19    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=22;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.202;QD=5.1;ReadPosRankSum=-1.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KYNU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264170    GT:AD:DP:GQ:PL    0/1:13,9:22:99:142,0,472
2    143787274    rs6430000    C    T    1481.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KYNU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264170    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1514,108,0
2    143791014    rs2304700    G    T    129.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.416;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=8.61;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KYNU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264170    GT:AD:DP:GQ:PL    0/1:9,6:15:99:159,0,337
2    143798189    rs9013    A    G    324.11    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.101;DB;DP=24;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=1.738;QD=13.5;ReadPosRankSum=-0.521;SNPEFF_AMINO_ACID_CHANGE=K412E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_143797997_143798227;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KYNU;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264170    GT:AD:DP:GQ:PL    0/1:11,13:24:99:354,0,391
2    143799907    rs3816193    G    A    119.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.94;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KYNU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264170    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:150,0,26
2    143913004    rs2580857    T    G    451.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295095    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:485,36,0
2    143973860    rs1451805    G    A    356.60    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=17.83;ReadPosRankSum=0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295095    GT:AD:DP:GQ:PL    0/1:9,11:20:99:387,0,270
2    144193151    rs71885418    C    CT    467.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=39;FS=2.716;HRun=14;HaplotypeScore=256.7627;IndelType=I;MQ=55.08;MQ0=0;MQRankSum=-0.835;QD=11.97;ReadPosRankSum=-0.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295095    GT:AD:DP:GQ:PL    1/1:18,10:39:44.81:509,45,0
2    144194565    rs17230746    C    T    446.58    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.29;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.655;QD=14.41;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=Y219;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_144194482_144194611;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295095    GT:AD:DP:GQ:PL    0/1:17,14:31:99:477,0,563
2    144314247    rs6734367    T    G    180.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295095    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:213,15,0
2    144899559    rs3731958    C    A    1129.23    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.974;DB;DP=64;Dels=0.0;FS=5.368;HRun=1;HaplotypeScore=0.5784;MQ=59.64;MQ0=0;MQRankSum=0.899;QD=17.64;ReadPosRankSum=0.432;SNPEFF_AMINO_ACID_CHANGE=M137I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_144899449_144899622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000241391    GT:AD:DP:GQ:PL    0/1:25,39:64:99:1159,0,695
2    145155731    rs10185359    T    C    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392861    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
2    147596973    rs4411641    A    G    347.78    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=17;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.845;QD=20.46;ReadPosRankSum=-0.896;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC103881.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450667    GT:AD:DP:GQ:PL    0/1:5,12:17:99:378,0,165
2    148602544    rs111368945    C    CT    351.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=12;HaplotypeScore=68.3709;IndelType=I;MQ=45.26;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACVR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404590    GT:AD:DP:GQ:PL    1/1:2,13:16:41.90:394,42,0
2    148657589    rs2288190    A    G    329.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACVR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462659    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:363,27,0
2    148675779    rs4972315    G    A    87.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACVR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241416    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    148676144    .    A    C    130.72    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.085;DP=56;Dels=0.0;FS=43.012;HRun=2;HaplotypeScore=8.8949;MQ=51.61;MQ0=0;MQRankSum=-2.549;QD=2.33;ReadPosRankSum=2.575;SNPEFF_AMINO_ACID_CHANGE=K207N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_148676016_148676161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACVR2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535787    GT:AD:DP:GQ:PL    0/1:20,36:56:99:161,0,629
2    148680762    rs2303391    A    G    236.60    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=26.29;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACVR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241416    GT:AD:DP:GQ:PL    0/1:2,7:9:51.12:267,0,51
2    148683919    rs12620026    A    T    81.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACVR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241416    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    148731252    rs1378081    T    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264169    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
2    149240657    rs150706298    GT    G    1403.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.808;DB;DP=87;FS=0.0;HRun=13;HaplotypeScore=297.0828;IndelType=D;MQ=60.22;MQ0=0;MQRankSum=0.393;QD=16.13;ReadPosRankSum=-0.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404807    GT:AD:DP:GQ:PL    1/1:12,68:87:99:1445,186,0
2    149243260    rs2121344    G    A    290.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404807    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:323,24,0
2    149270710    rs16828708    A    G    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.37;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496893    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,109
2    149520186    rs12622667    T    C    532.85    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=4.171;DB;DP=45;Dels=0.0;FS=3.002;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.172;QD=11.84;ReadPosRankSum=0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397424    GT:AD:DP:GQ:PL    0/1:26,19:45:99:563,0,843
2    149520214    rs10193313    C    A    800.12    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.648;DB;DP=58;Dels=0.0;FS=4.97;HRun=0;HaplotypeScore=0.9894;MQ=59.6;MQ0=0;MQRankSum=0.577;QD=13.8;ReadPosRankSum=-0.873;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397424    GT:AD:DP:GQ:PL    0/1:31,27:58:99:830,0,963
2    149522849    rs16829245    G    T    33.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.66;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397424    GT:AD:DP:GQ:PL    0/1:4,2:6:63.98:64,0,111
2    149529083    rs4972266    T    C    784.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258484    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:817,63,0
2    149529095    rs13022974    A    G    205.65    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.808;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=11.42;ReadPosRankSum=0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258484    GT:AD:DP:GQ:PL    0/1:11,7:18:99:236,0,376
2    149539054    rs2289995    G    A    58.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=6.5;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258484    GT:AD:DP:GQ:PL    0/1:6,3:9:88.49:88,0,198
2    149539060    rs2289996    T    G    170.97    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=17.1;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258484    GT:AD:DP:GQ:PL    0/1:3,7:10:98.14:201,0,98
2    149679958    rs4346318    A    T    223.80    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.67;QD=17.22;ReadPosRankSum=-0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451033    GT:AD:DP:GQ:PL    0/1:5,8:13:99:254,0,167
2    149793551    rs73966655    A    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414838    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    149793612    rs73966656    A    T    242.42    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-1.22;QD=16.16;ReadPosRankSum=1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414838    GT:AD:DP:GQ:PL    0/1:7,8:15:99:272,0,243
2    149798213    rs73970609    G    A    280.44    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=20;Dels=0.0;FS=6.607;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.836;QD=14.02;ReadPosRankSum=0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334436    GT:AD:DP:GQ:PL    0/1:9,11:20:99:310,0,326
2    149799216    rs61734995    T    C    677.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=43;Dels=0.0;FS=7.61;HRun=3;HaplotypeScore=1.7621;MQ=59.03;MQ0=0;MQRankSum=0.644;QD=15.75;ReadPosRankSum=0.381;SNPEFF_AMINO_ACID_CHANGE=P177;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_149799187_149799274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435030    GT:AD:DP:GQ:PL    0/1:18,24:43:99:707,0,551
2    149803357    rs73962006    A    T    922.33    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=68;Dels=0.0;FS=3.184;HRun=2;HaplotypeScore=1.8938;MQ=60.0;MQ0=0;MQRankSum=-0.571;QD=13.56;ReadPosRankSum=-1.789;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334436    GT:AD:DP:GQ:PL    0/1:33,35:68:99:952,0,1090
2    149806388    rs60169973    C    T    1335.45    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=3.864;DB;DP=83;Dels=0.0;FS=0.839;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.229;QD=16.09;ReadPosRankSum=-0.222;SNPEFF_AMINO_ACID_CHANGE=D153;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_149806353_149806457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334436    GT:AD:DP:GQ:PL    0/1:39,44:83:99:1365,0,983
2    149838132    rs11901442    T    G    81.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334436    GT:AD:DP:GQ:PL    0/1:2,3:5:59.03:112,0,59
2    149853960    rs6738277    A    G    554.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334436    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:587,48,0
2    150016809    rs16826652    T    C    657.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYPD6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409029    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:691,51,0
2    150325416    rs1196660    A    G    199.30    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-1.13;QD=8.67;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334166    GT:AD:DP:GQ:PL    0/1:15,8:23:99:229,0,545
2    150426399    rs6742604    A    G    453.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:487,39,0
2    150427516    rs4500908    C    T    415.77    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.382;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.153;QD=14.34;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    0/1:15,14:29:99:446,0,553
2    150432377    rs12232959    C    G    430.22    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=17.21;ReadPosRankSum=0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    0/1:9,16:25:99:460,0,310
2    150432469    rs10932467    G    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,109
2    150432976    rs11545261    C    T    2484    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=Q151;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_150432951_150433056;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2517,187,0
2    150433128    rs11680630    C    G    143.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.639;QD=7.95;ReadPosRankSum=-0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    0/1:12,6:18:99:173,0,424
2    150435889    rs36108609    C    CAA    560.60    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.563;DB;DP=25;FS=0.0;HRun=2;HaplotypeScore=63.2376;IndelType=I;MQ=59.07;MQ0=0;MQRankSum=-0.462;QD=22.42;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    0/1:13,12:25:99:600,0,499
2    150443689    rs4667420    C    G    830.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    1/1:1,22:24:63.21:864,63,0
2    150443813    rs4667419    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMADHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303319    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    150714893    rs1561312    A    G    3782.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.76;MQ0=0;QD=34.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295052    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3783,280,0
2    150715515    rs6437112    C    T    2713.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=38.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295052    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2747,202,0
2    151326862    rs13000209    T    C    159.46    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=14.5;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439275    GT:AD:DP:GQ:PL    0/1:4,7:11:99:189,0,131
2    151326953    rs12692713    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439275    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    151328284    rs35755012    GA    G    426.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=95.5403;IndelType=D;MQ=59.73;MQ0=0;QD=17.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439275    GT:AD:DP:GQ:PL    1/1:2,21:24:61.78:469,62,0
2    151900223    rs7589036    T    C    4078.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=55.68;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC023469.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409243    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4079,322,0
2    151900390    rs67803515    TAAAAACAAAAAC    T    2861.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=0;HaplotypeScore=583.6127;IndelType=D;MQ=44.26;MQ0=0;QD=52.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC023469.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409243    GT:AD:DP:GQ:PL    1/1:26,28:54:87.29:2903,87,0
2    152107214    rs289884    T    C    78.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331426    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
2    152108261    rs4665119    T    G    590.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331426    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:623,48,0
2    152109159    rs289885    C    T    575.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331426    GT:AD:DP:GQ:PL    1/1:0,17:18:48.15:609,48,0
2    152111931    rs35043333    C    CA    244.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=24.3378;IndelType=I;MQ=57.66;MQ0=0;QD=24.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331426    GT:AD:DP:GQ:PL    1/1:1,8:10:27.07:287,27,0
2    152117780    rs2271811    T    C    230.66    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=11.53;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331426    GT:AD:DP:GQ:PL    0/1:11,9:20:99:261,0,339
2    152118271    rs55775354    G    A    182.68    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=26.1;ReadPosRankSum=-0.742;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_152118239_152118393;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331426    GT:AD:DP:GQ:PL    0/1:1,6:7:15.06:213,0,15
2    152118275    rs56376752    A    G    185.55    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=23.19;ReadPosRankSum=-0.747;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_152118239_152118393;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331426    GT:AD:DP:GQ:PL    0/1:1,7:8:21.16:216,0,21
2    152138522    rs3771886    T    C    917.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.568;DB;DP=74;Dels=0.0;FS=0.911;HRun=0;HaplotypeScore=2.2633;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=12.39;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=Q39;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152138462_152138557;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243346    GT:AD:DP:GQ:PL    0/1:37,37:74:99:947,0,1005
2    152139271    rs10169816    C    T    76.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.68;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477072    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,107
2    152139416    rs1048135    G    A    1001.78    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.653;DB;DP=71;Dels=0.0;FS=0.912;HRun=2;HaplotypeScore=2.3656;MQ=59.41;MQ0=0;MQRankSum=0.178;QD=14.11;ReadPosRankSum=0.927;SNPEFF_AMINO_ACID_CHANGE=S16L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152139382_152139468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243346    GT:AD:DP:GQ:PL    0/1:34,37:71:99:1032,0,957
2    152139493    rs10182245    A    G    905.03    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.373;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=17.75;ReadPosRankSum=1.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243346    GT:AD:DP:GQ:PL    0/1:21,30:51:99:935,0,649
2    152236045    rs71403164    TA    T    313.99    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=1.402;DB;DP=68;FS=9.304;HRun=14;HaplotypeScore=306.4154;IndelType=D;MQ=57.32;MQ0=0;MQRankSum=0.31;QD=4.62;ReadPosRankSum=0.546;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_152235878_152236560;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000243347    GT:AD:DP:GQ:PL    0/1:37,26:68:99:353,0,400
2    152267072    rs4664045    T    G    71.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.15;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:3,6:10:81:101,0,81
2    152267672    rs7585604    G    A    583.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:616,48,0
2    152267721    rs142753017    AT    A    373.94    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=43;FS=0.0;HRun=11;HaplotypeScore=158.9041;IndelType=D;MQ=59.18;MQ0=0;MQRankSum=1.883;QD=8.7;ReadPosRankSum=0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:20,22:43:99:413,0,525
2    152267897    rs147345000    G    GT    430.80    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.422;DB;DP=43;FS=0.0;HRun=11;HaplotypeScore=151.5825;IndelType=I;MQ=58.05;MQ0=0;MQRankSum=1.268;QD=10.02;ReadPosRankSum=1.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:23,20:43:99:470,0,269
2    152273503    rs6735771    G    A    105.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.47;QD=10.54;ReadPosRankSum=-0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420714    GT:AD:DP:GQ:PL    0/1:5,5:10:99:135,0,186
2    152289767    rs72860233    G    A    497.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.021;DB;DP=30;Dels=0.0;FS=3.776;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=16.59;ReadPosRankSum=-0.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:12,18:30:99:528,0,400
2    152292169    rs113447149    GA    G    375.02    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=4.397;DB;DP=51;FS=2.387;HRun=9;HaplotypeScore=126.917;IndelType=D;MQ=60.21;MQ0=0;MQRankSum=-1.131;QD=7.35;ReadPosRankSum=-0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:31,20:51:99:414,0,731
2    152293620    rs2444272    C    T    315.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:348,27,0
2    152295141    rs16830036    A    G    219.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.826;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=12.18;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:9,9:18:99:249,0,288
2    152303171    rs2432941    G    A    1089.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433166    GT:AD:DP:GQ:PL    1/1:0,29:29:84.25:1123,84,0
2    152311570    rs2444263    G    A    2922.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_AMINO_ACID_CHANGE=G836S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152311409_152311673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2955,217,0
2    152314385    rs16830047    G    A    856.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.373;DB;DP=50;Dels=0.0;FS=1.198;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.0;QD=17.14;ReadPosRankSum=-1.033;SNPEFF_AMINO_ACID_CHANGE=L921;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152314275_152314477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:20,30:50:99:887,0,546
2    152314547    rs76540687    C    CA    459.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=22.0696;IndelType=I;MQ=60.9;MQ0=0;QD=38.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:502,36,0
2    152315549    rs2444260    G    T    205.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
2    152317531    rs2045025    T    C    78.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.01;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,100
2    152318031    rs4664438    G    A    61.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.358;QD=12.23;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:2,3:5:68.95:91,0,69
2    152318713    rs147746961    TATC    T    217.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=47.1174;IndelType=D;MQ=57.0;MQ0=0;MQRankSum=-0.143;QD=18.16;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    0/1:6,6:12:99:257,0,306
2    152320118    rs2123465    G    A    2213.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.083;QD=34.59;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=V1362M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152319398_152322634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2246,132,0
2    152322095    rs2444257    A    T    962.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=35.64;SNPEFF_AMINO_ACID_CHANGE=N2021Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152319398_152322634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:995,75,0
2    152324789    rs2444274    G    C    577.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243326    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:611,45,0
2    152331418    rs1065177    C    G    1190.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.07;SNPEFF_AMINO_ACID_CHANGE=L2392V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152331371_152331902;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428287    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1223,90,0
2    152342481    rs16830090    A    G    899.53    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.291;DB;DP=73;Dels=0.0;FS=2.563;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.427;QD=12.32;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIF1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:40,33:73:99:930,0,1358
2    152346979    rs1061305    T    C    414.78    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=35;Dels=0.0;FS=1.4;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.378;QD=11.85;ReadPosRankSum=0.038;SNPEFF_AMINO_ACID_CHANGE=I2502V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152346886_152347032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397342    GT:AD:DP:GQ:PL    0/1:18,17:35:99:445,0,564
2    152348842    rs2288193    T    A    1157.34    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=95;Dels=0.0;FS=1.812;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.018;QD=12.18;ReadPosRankSum=0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424585    GT:AD:DP:GQ:PL    0/1:54,41:95:99:1187,0,1804
2    152349026    rs2288195    G    A    3445.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;QD=37.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424585    GT:AD:DP:GQ:PL    1/1:1,91:92:99:3446,253,0
2    152350462    rs4664455    T    C    575.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=38.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424585    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:608,45,0
2    152352843    rs7575451    C    G    3322.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7172;MQ=59.79;MQ0=0;QD=36.51;SNPEFF_AMINO_ACID_CHANGE=A120P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152352790_152352882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397336    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3322,244,0
2    152353395    rs10497081    T    G    583.14    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.366;DB;DP=55;Dels=0.0;FS=3.602;HRun=0;HaplotypeScore=0.9998;MQ=58.81;MQ0=0;MQRankSum=0.195;QD=10.6;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:31,24:55:99:613,0,1062
2    152369117    rs13023600    T    C    1402.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483418    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1436,105,0
2    152374800    rs16830136    G    A    5385.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=59.57;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,151:151:99:5386,397,0
2    152375935    rs13391309    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    152381622    rs187522643    T    G    1268.33    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=97;Dels=0.0;FS=1.02;HRun=0;HaplotypeScore=1.4725;MQ=59.28;MQ0=0;MQRankSum=-0.415;QD=13.08;ReadPosRankSum=0.842;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:53,44:97:99:1298,0,1762
2    152381895    rs2288196    G    A    1871.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1905,141,0
2    152382199    rs7585717    A    G    78.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480784    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
2    152382329    rs7597735    G    A    1212.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480784    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1245,99,0
2    152382454    rs6721666    C    G    4369.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7337;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480784    GT:AD:DP:GQ:PL    1/1:0,138:139:99:4369,361,0
2    152383913    rs2288198    T    C    1132.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420924    GT:AD:DP:GQ:PL    1/1:0,31:31:87.26:1166,87,0
2    152384377    rs10930688    T    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420924    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    152387553    rs4664475    T    C    3460.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=59.21;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=T1543;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152387508_152387615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397342    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3461,277,0
2    152387762    rs6433481    T    C    241.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=51.13;MQ0=0;QD=17.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420924    GT:AD:DP:GQ:PL    1/1:0,14:14:21.07:275,21,0
2    152388228    rs60806638    G    C    708.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.42;MQ0=0;QD=35.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420924    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:742,54,0
2    152388415    rs112094961    AT    A    3298.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.0;HRun=2;HaplotypeScore=247.2593;IndelType=D;MQ=59.97;MQ0=0;QD=38.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:1,85:86:99:3299,256,0
2    152394106    rs13425109    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    152394534    rs3732310    T    G    2780.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2814,214,0
2    152396726    rs76710630    T    TA    353.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=7;HaplotypeScore=28.8229;IndelType=I;MQ=58.88;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:395,33,0
2    152402515    rs72523010    T    TA    571.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.295;DB;DP=66;FS=4.325;HRun=17;HaplotypeScore=582.8278;IndelType=I;MQ=54.83;MQ0=0;MQRankSum=-0.676;QD=8.66;ReadPosRankSum=-1.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:30,25:66:38.91:613,39,0
2    152402711    rs3213818    A    G    518.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:552,45,0
2    152403014    rs4664486    C    T    1285.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.94;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,36:41:99:1318,99,0
2    152404294    rs2288201    C    T    1710.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.59;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1743,132,0
2    152409416    rs2288203    C    T    768.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:801,60,0
2    152409809    rs4575719    C    A    510.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:543,45,0
2    152410732    rs6731486    A    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    152417064    rs2288206    G    A    105.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.67;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:2,4:6:57.53:136,0,58
2    152417311    rs3214502    T    TC    372.26    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=20;FS=0.0;HRun=3;HaplotypeScore=42.4191;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=1.357;QD=18.61;ReadPosRankSum=0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:9,11:20:99:411,0,165
2    152417999    rs7424331    C    T    205.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,13:13:18.06:238,18,0
2    152418022    rs7419413    T    C    214.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:247,21,0
2    152421357    rs6433504    G    A    168.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:201,15,0
2    152421937    rs7602715    A    G    865.06    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=1.037;DB;DP=55;Dels=0.0;FS=7.158;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.211;QD=15.73;ReadPosRankSum=-0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:26,29:55:99:895,0,787
2    152422076    rs2288210    C    G    4923.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.31;MQ0=0;QD=36.47;SNPEFF_AMINO_ACID_CHANGE=R4401T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152422015_152422119;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4924,361,0
2    152422087    rs2288211    A    G    1655.07    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=139;Dels=0.0;FS=0.64;HRun=2;HaplotypeScore=0.734;MQ=59.5;MQ0=0;MQRankSum=0.501;QD=11.91;ReadPosRankSum=-1.293;SNPEFF_AMINO_ACID_CHANGE=Y4397;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152422015_152422119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:76,63:139:99:1685,0,2456
2    152423459    rs7557092    T    A    30.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:1,2:3:6.01:62,6,0
2    152424933    rs71929825    T    TA    1381.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.828;DB;DP=96;FS=0.0;HRun=13;HaplotypeScore=409.6336;IndelType=I;MQ=58.0;MQ0=0;MQRankSum=0.542;QD=14.39;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:33,61:96:36.80:1423,37,0
2    152425692    rs3732312    T    C    910.99    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.647;DB;DP=72;Dels=0.0;FS=1.653;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.456;QD=12.65;ReadPosRankSum=0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:40,32:72:99:941,0,1255
2    152427249    rs7568873    A    G    583.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:616,45,0
2    152432481    rs3771901    G    A    320.45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=11.44;ReadPosRankSum=-0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:16,12:28:99:350,0,581
2    152432886    rs61254943    G    A    1433.92    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=95;Dels=0.0;FS=1.251;HRun=1;HaplotypeScore=1.9994;MQ=60.0;MQ0=0;MQRankSum=-0.384;QD=15.09;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:42,52:95:99:1464,0,1323
2    152447845    .    G    GC    498.38    PASS    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.015;DP=105;FS=4.132;HRun=0;HaplotypeScore=260.9691;IndelType=I;MQ=23.37;MQ0=5;MQRankSum=-0.013;QD=4.22;ReadPosRankSum=1.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:95,23:105:99:537,0,3154
2    152466728    rs58909595    T    C    219.30    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.945;QD=9.97;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:14,8:22:99:249,0,503
2    152472417    rs62174707    C    T    511.48    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.395;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.145;QD=17.05;ReadPosRankSum=1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:14,16:30:99:541,0,433
2    152474001    rs4303716    A    G    226.61    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9592;MQ=53.9;MQ0=0;MQRankSum=2.496;QD=4.72;ReadPosRankSum=0.864;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:23,25:48:99:257,0,330
2    152475938    rs10186656    T    G    874.02    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.888;DB;DP=63;Dels=0.0;FS=1.151;HRun=1;HaplotypeScore=0.5784;MQ=59.34;MQ0=0;MQRankSum=1.741;QD=13.87;ReadPosRankSum=-0.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:33,30:63:99:904,0,1036
2    152476028    rs10172023    C    G    2102.55    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.214;DB;DP=138;Dels=0.0;FS=5.319;HRun=0;HaplotypeScore=4.3881;MQ=60.0;MQ0=0;MQRankSum=0.21;QD=15.24;ReadPosRankSum=-0.21;SNPEFF_AMINO_ACID_CHANGE=W3360C;SNPEFF_CODON_CHANGE=tgG/tgC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152475965_152476276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:64,73:138:99:2133,0,1851
2    152481846    rs4599105    G    A    208.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
2    152481977    rs10186482    A    G    1692.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1726,144,0
2    152487574    rs4233653    T    C    2027.47    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.056;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9089;MQ=59.66;MQ0=0;MQRankSum=0.857;QD=15.13;ReadPosRankSum=0.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:70,64:134:99:2057,0,2323
2    152490219    rs6709886    A    G    5279.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=P3121;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152490168_152490479;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397345    GT:AD:DP:GQ:PL    1/1:0,174:175:99:5279,430,0
2    152490458    rs6710212    A    G    5456.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7675;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=C3042R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152490168_152490479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397345    GT:AD:DP:GQ:PL    1/1:0,154:154:99:5457,409,0
2    152500449    rs13013209    C    G    8661.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.7;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=K2613N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152500332_152500643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,248:250:99:8662,644,0
2    152500957    rs78226234    A    G    1900.45    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.066;DB;DP=115;Dels=0.0;FS=3.795;HRun=0;HaplotypeScore=2.3565;MQ=59.31;MQ0=0;MQRankSum=1.078;QD=16.53;ReadPosRankSum=1.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:55,60:115:99:1930,0,1661
2    152512761    .    T    C    3436.27    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DP=207;DS;Dels=0.0;FS=2.648;HRun=0;HaplotypeScore=1.7287;MQ=59.78;MQ0=0;MQRankSum=-0.738;QD=16.6;ReadPosRankSum=0.552;SNPEFF_AMINO_ACID_CHANGE=N2134S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152512667_152512978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    0/1:99,108:207:99:3436,0,3092
2    152520535    rs67814419    AT    A    80.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=11;HaplotypeScore=16.3686;IndelType=D;MQ=64.19;MQ0=0;QD=16.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484968    GT:AD:DP:GQ:PL    1/1:0,5:5:14.98:123,15,0
2    152527572    rs7426114    C    T    4619.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=V1491M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152527537_152527743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4620,337,0
2    152531077    rs6711382    A    G    3294.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=36.61;SNPEFF_AMINO_ACID_CHANGE=Y1301H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152530991_152531098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3295,238,0
2    152536498    rs6735208    T    A    2575.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.15;MQ0=0;QD=31.41;SNPEFF_AMINO_ACID_CHANGE=K1027N;SNPEFF_CODON_CHANGE=aaA/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152536432_152536536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2609,202,0
2    152539550    rs4453694    T    C    81.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
2    152541134    rs7564674    T    C    159.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489048    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
2    152552062    rs6433569    A    C    3788.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3789,277,0
2    152566433    rs12464543    A    G    389.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:423,33,0
2    152573902    rs34733773    A    AGGC    5646.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.0;HRun=0;HaplotypeScore=315.0473;IndelType=I;MQ=56.53;MQ0=0;QD=62.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:5,85:91:99:5646,259,0
2    152573981    rs4611637    A    G    4181.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.22;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=A257;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_152573930_152574034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4182,334,0
2    152574284    rs4413159    G    A    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    152581866    rs4300824    T    C    1484.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1517,114,0
2    152584153    rs4664499    A    C    1435.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172853    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1468,111,0
2    152668750    rs2030588    C    A    252.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARL5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295087    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
2    152684704    rs67347668    A    AC    294.25    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.794;DB;DP=23;FS=2.963;HRun=9;HaplotypeScore=132.1502;IndelType=I;MQ=61.58;MQ0=0;MQRankSum=0.65;QD=12.79;ReadPosRankSum=1.804;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360283    GT:AD:DP:GQ:PL    0/1:5,17:23:33.06:333,0,33
2    152717360    .    C    A    258.09    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.452;DP=75;Dels=0.0;FS=52.899;HRun=2;HaplotypeScore=6.6321;MQ=57.17;MQ0=0;MQRankSum=-0.956;QD=3.44;ReadPosRankSum=1.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470066    GT:AD:DP:GQ:PL    0/1:38,37:75:99:288,0,704
2    152729138    rs770609    T    C    450.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434468    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:483,36,0
2    152739506    rs2680972    T    C    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475848    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:66,6,0
2    152827973    rs7567588    A    G    1181.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201943    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1214,90,0
2    152828281    rs7607341    C    G    37.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201943    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
2    153192324    rs2003332    C    T    335.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:369,30,0
2    153378459    rs4664114    T    C    2369.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7074;MQ=59.68;MQ0=0;QD=33.37;SNPEFF_AMINO_ACID_CHANGE=N40;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_153378457_153378540;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2402,178,0
2    153378574    rs4664592    A    G    1550.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1584,132,0
2    153378652    rs4664593    G    A    495.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:528,39,0
2    153399594    rs2678301    G    A    89.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    153415170    rs6705427    A    C    95.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=63.17;MQ0=0;MQRankSum=0.103;QD=9.56;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:5,5:10:99:126,0,186
2    153415234    .    T    TG    587.81    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.041;DP=39;FS=5.942;HRun=0;HaplotypeScore=231.4246;IndelType=I;MQ=61.48;MQ0=0;MQRankSum=0.814;QD=15.07;ReadPosRankSum=0.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:15,23:39:99:627,0,325
2    153415376    rs6434098    T    G    547.53    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.397;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.018;QD=16.1;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:16,18:34:99:578,0,529
2    153417325    rs6713836    A    G    94.87    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=7.91;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:7,5:12:99:125,0,234
2    153435288    rs12693407    G    A    154.28    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:184,0,24
2    153463984    rs5835438    TAC    T    442.19    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=173.1064;IndelType=D;MQ=61.25;MQ0=0;MQRankSum=1.23;QD=10.28;ReadPosRankSum=-0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:26,17:43:99:481,0,363
2    153467862    rs10931191    C    A    305.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=25.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492942    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:338,30,0
2    153468107    rs35776654    C    T    1662.58    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=5.269;DB;DP=141;Dels=0.0;FS=6.3;HRun=0;HaplotypeScore=1.9998;MQ=59.34;MQ0=0;MQRankSum=-0.359;QD=11.79;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=D350;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_153468009_153468119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:79,62:141:99:1693,0,2077
2    153468404    rs4260194    A    G    173.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492942    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
2    153471200    rs13023975    T    C    70.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.46;MQ0=0;MQRankSum=0.55;QD=8.81;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:4,4:8:99:100,0,140
2    153471255    rs70974877    T    TCAAAACAAAACAAAACAAAA    1278.51    PASS    AB=0.865;AC=1;AF=0.50;AN=2;BaseQRankSum=0.239;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=438.3024;IndelType=I;MQ=56.63;MQ0=0;MQRankSum=-2.044;QD=39.95;ReadPosRankSum=0.611;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:27,4:32:99:1318,0,2658
2    153473435    rs7596408    G    A    178.70    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8317;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=14.89;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:5,6:12:99:209,0,171
2    153473521    rs12693415    A    C    804.71    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.74;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.903;QD=13.41;ReadPosRankSum=0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:32,28:60:99:835,0,952
2    153473794    rs2304556    T    G    720.68    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=3.946;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=21.2;ReadPosRankSum=0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:12,22:34:99:751,0,362
2    153476066    rs5835439    G    GCCA    612.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=79.6911;IndelType=I;MQ=46.37;MQ0=0;QD=47.1;SNPEFF_AMINO_ACID_CHANGE=-558P;SNPEFF_CODON_CHANGE=-/CCA;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_2_153476023_153476232;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:2,10:13:36.10:654,36,0
2    153481943    rs2346532    T    C    2866.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=59.42;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2899,220,0
2    153482128    rs12478681    G    A    1874.44    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.605;DB;DP=105;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=2.5105;MQ=59.78;MQ0=0;MQRankSum=-0.374;QD=17.85;ReadPosRankSum=-0.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:45,59:105:99:1904,0,1398
2    153483257    rs7604573    T    C    1563.95    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.931;DB;DP=92;Dels=0.0;FS=3.882;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=17.0;ReadPosRankSum=-0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497192    GT:AD:DP:GQ:PL    0/1:39,53:92:99:1594,0,1231
2    153484685    rs3811570    G    A    112.80    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=8.06;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497192    GT:AD:DP:GQ:PL    0/1:9,5:14:99:143,0,276
2    153492910    rs1561267    G    T    2201.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2234,175,0
2    153497168    rs1465818    C    T    337.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:370,27,0
2    153504371    rs182064759    T    G    2093.18    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=193;Dels=0.0;FS=8.571;HRun=1;HaplotypeScore=5.0616;MQ=57.53;MQ0=0;MQRankSum=-0.448;QD=10.85;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=F1077L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_153504310_153506348;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288670    GT:AD:DP:GQ:PL    0/1:96,97:193:99:2123,0,2805
2    153504552    rs12693429    G    A    190.96    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.467;QD=8.68;ReadPosRankSum=1.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410080    GT:AD:DP:GQ:PL    0/1:14,8:22:99:221,0,488
2    153514583    rs6713779    G    C    1867.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356402    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1900,138,0
2    153514610    rs12999331    T    C    302.14    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.301;DB;DP=31;Dels=0.0;FS=3.774;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.141;QD=9.75;ReadPosRankSum=-0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356402    GT:AD:DP:GQ:PL    0/1:18,13:31:99:332,0,646
2    153514689    rs6746079    C    T    169.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.78;QD=12.12;ReadPosRankSum=-0.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472760    GT:AD:DP:GQ:PL    0/1:7,7:14:99:200,0,247
2    153519524    rs1036526    A    G    2867.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=34.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472760    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2901,217,0
2    153520782    rs3762507    A    G    4047.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.8;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356402    GT:AD:DP:GQ:PL    1/1:0,114:114:99:4048,292,0
2    153520819    rs3762506    C    A    2821.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.69;MQ0=0;QD=38.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356402    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2855,205,0
2    153525971    rs6727279    A    C    134.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545856    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:168,15,0
2    153527017    rs2118377    C    T    999.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545856    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1032,78,0
2    153529361    rs2304559    T    C    1406.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8587;MQ=58.74;MQ0=0;QD=38.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493468    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1440,105,0
2    153534139    rs1437676    G    A    367.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448428    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:401,30,0
2    153535670    rs10166987    C    T    1880.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356402    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1914,144,0
2    153536173    rs6746321    A    G    132.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356402    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
2    153549814    rs10172024    G    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450303    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    153572438    rs2346548    C    T    3101.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3893;MQ=59.74;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486100    GT:AD:DP:GQ:PL    1/1:0,88:89:99:3134,238,0
2    153572800    rs17400715    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF40A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356402    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    153577013    rs9646744    G    A    782.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARL6IP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326446    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:816,60,0
2    153591378    rs10931263    C    G    354.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.839;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=16.13;ReadPosRankSum=0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARL6IP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326446    GT:AD:DP:GQ:PL    0/1:11,11:22:99:385,0,390
2    154800874    rs4318348    A    G    227.09    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.724;QD=9.46;ReadPosRankSum=-0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392825    GT:AD:DP:GQ:PL    0/1:15,9:24:99:257,0,522
2    155098390    rs2059335    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392825    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    155099090    rs10166119    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392825    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    155265623    rs1405936    G    A    898.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392825    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:931,69,0
2    155295072    rs11352693    AT    A    504.12    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=5.583;DB;DP=52;FS=1.796;HRun=8;HaplotypeScore=120.082;IndelType=D;MQ=60.18;MQ0=0;MQRankSum=2.146;QD=9.69;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392825    GT:AD:DP:GQ:PL    0/1:28,24:52:99:543,0,788
2    155295380    rs697647    T    C    198.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487047    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:232,18,0
2    155306885    rs697648    C    T    1360.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392825    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1394,102,0
2    155711357    rs17642086    T    C    1177.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.594;DB;DP=88;Dels=0.0;FS=0.816;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.22;QD=13.38;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=H346;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_155711239_155714863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295101    GT:AD:DP:GQ:PL    0/1:44,44:88:99:1207,0,1377
2    157183211    rs67201721    TC    T    3145.63    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=11.189;DB;DP=246;DS;FS=4.475;HRun=3;HaplotypeScore=611.1554;IndelType=D;MQ=59.86;MQ0=0;MQRankSum=1.151;QD=12.79;ReadPosRankSum=1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421709    GT:AD:DP:GQ:PL    0/1:141,105:246:99:3185,0,5082
2    157370018    rs56102423    GT    G    180.13    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=1.417;DB;DP=34;FS=0.0;HRun=14;HaplotypeScore=177.9903;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=0.22;QD=5.3;ReadPosRankSum=1.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415049    GT:AD:DP:GQ:PL    0/1:14,17:34:99:219,0,168
2    157406249    rs2116665    G    A    1404.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=36.97;SNPEFF_AMINO_ACID_CHANGE=R264H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_157406120_157406284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1438,108,0
2    157406296    rs2116664    A    C    737.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=38.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:770,57,0
2    157407180    .    G    A    633.72    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DP=37;Dels=0.0;FS=1.926;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=17.13;ReadPosRankSum=-0.971;SNPEFF_AMINO_ACID_CHANGE=R298H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_157407114_157407258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    0/1:16,21:37:99:664,0,499
2    157413751    rs56243710    T    C    238.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:272,21,0
2    157425502    rs111632658    C    CT    250.77    PASS    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.647;DB;DP=57;FS=12.409;HRun=16;HaplotypeScore=541.9665;IndelType=I;MQ=47.89;MQ0=0;MQRankSum=-0.717;QD=4.4;ReadPosRankSum=-0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    0/1:45,9:57:94:290,0,94
2    157425801    rs67602053    A    G    72.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.42;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    0/1:4,3:7:97.29:103,0,97
2    157427593    rs1469652    T    C    1730.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1764,132,0
2    157427837    rs1469651    C    A    1284.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.36;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    1/1:0,36:36:96.32:1318,96,0
2    157427850    rs1469650    G    A    1088.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310454    GT:AD:DP:GQ:PL    1/1:0,29:29:81.27:1122,81,0
2    158140717    rs2289942    C    T    117.26    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.139;QD=6.17;ReadPosRankSum=0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259056    GT:AD:DP:GQ:PL    0/1:14,5:19:99:147,0,526
2    158141079    rs2289941    T    C    79.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259056    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
2    158152046    rs71915235    GA    G    240.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.306;DB;DP=19;FS=0.0;HRun=13;HaplotypeScore=104.2138;IndelType=D;MQ=56.86;MQ0=0;MQRankSum=0.51;QD=12.66;ReadPosRankSum=-0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259056    GT:AD:DP:GQ:PL    1/1:2,16:19:19.54:282,20,0
2    158157361    rs3214040    C    T    953.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.66;SNPEFF_AMINO_ACID_CHANGE=H763;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_158157188_158157511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259056    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:986,75,0
2    158162475    rs3214039    C    T    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461704    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    158162521    rs3816595    T    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461704    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    158164859    rs6437053    T    C    921.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=40.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259056    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:955,69,0
2    158164885    rs6437054    A    G    1707.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=37.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259056    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1740,132,0
2    158165004    rs6728956    C    T    7578.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=227;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.748;MQ=59.7;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259056    GT:AD:DP:GQ:PL    1/1:0,227:227:99:7579,563,0
2    158275111    rs71402390    T    TA    163.79    PASS    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=56;FS=1.786;HRun=17;HaplotypeScore=445.1765;IndelType=I;MQ=51.04;MQ0=0;MQRankSum=-1.226;QD=2.92;ReadPosRankSum=0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264192    GT:AD:DP:GQ:PL    0/1:40,11:56:99:203,0,113
2    158283710    rs155614    A    G    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439355    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    158284056    rs155613    C    T    83.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439355    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    158291107    rs70987792    T    TAG    176.80    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=36.726;IndelType=I;MQ=58.46;MQ0=0;MQRankSum=-0.198;QD=22.1;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435117    GT:AD:DP:GQ:PL    0/1:3,5:8:49.65:216,0,50
2    158291188    rs11904180    A    C    609.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435117    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:642,51,0
2    158298105    rs7605373    T    C    2084.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7849;MQ=42.09;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264192    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2117,178,0
2    158298115    rs112695012    TACACAC    T    2432.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=0;HaplotypeScore=727.2039;IndelType=D;MQ=42.58;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264192    GT:AD:DP:GQ:PL    1/1:26,42:70:99:2475,129,0
2    158300581    rs72906487    G    C    354.95    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.888;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.136;QD=11.09;ReadPosRankSum=0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435117    GT:AD:DP:GQ:PL    0/1:20,12:32:99:385,0,697
2    158394813    rs6437105    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    158395079    rs77015367    C    G    2204.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4972;MQ=59.69;MQ0=0;QD=29.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2237,175,0
2    158399510    rs4254465    T    A    512.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:546,42,0
2    158399514    rs4461222    G    T    408.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=27.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:442,36,0
2    158399577    rs45501693    G    A    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:68,0,70
2    158400806    rs10432555    C    A    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    158400908    rs6728987    C    T    949.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=37.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    1/1:0,25:25:75.24:983,75,0
2    158401137    rs10432556    T    C    979.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    1/1:0,31:31:81.25:1013,81,0
2    158412542    rs13010956    T    C    193.62    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.562;QD=12.91;ReadPosRankSum=-2.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    0/1:8,7:15:99:224,0,274
2    158443889    rs4556933    G    A    1940.66    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.096;DB;DP=130;Dels=0.0;FS=0.817;HRun=2;HaplotypeScore=0.9989;MQ=59.86;MQ0=0;MQRankSum=-0.134;QD=14.93;ReadPosRankSum=0.725;SNPEFF_AMINO_ACID_CHANGE=F38;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_158443699_158443929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243349    GT:AD:DP:GQ:PL    0/1:61,69:130:99:1971,0,1921
2    158626980    rs1146031    C    T    2640.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=30.7;SNPEFF_AMINO_ACID_CHANGE=E230;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_158626880_158627026;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263640    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2673,205,0
2    158636910    rs2227861    G    A    1065.38    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=2.274;DB;DP=66;Dels=0.0;FS=6.623;HRun=0;HaplotypeScore=2.7992;MQ=59.65;MQ0=0;MQRankSum=-0.385;QD=16.14;ReadPosRankSum=-0.128;SNPEFF_AMINO_ACID_CHANGE=A90;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_158636849_158637112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263640    GT:AD:DP:GQ:PL    0/1:31,35:66:99:1095,0,976
2    158637137    rs1866885    A    G    287.25    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.395;DB;DP=31;Dels=0.03;FS=0.0;HRun=4;HaplotypeScore=6.8128;MQ=57.05;MQ0=0;MQRankSum=-0.686;QD=8.98;ReadPosRankSum=0.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263640    GT:AD:DP:GQ:PL    0/1:14,17:31:99:317,0,233
2    158655883    rs68110751    C    CAA    370.06    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.862;DB;DP=29;FS=3.203;HRun=11;HaplotypeScore=123.476;IndelType=I;MQ=57.57;MQ0=0;MQRankSum=0.4;QD=12.76;ReadPosRankSum=-1.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413751    GT:AD:DP:GQ:PL    0/1:18,11:29:99:409,0,280
2    158974155    rs10176046    T    G    216.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005756    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
2    158978178    rs10804389    C    G    1135.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.28;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005756    GT:AD:DP:GQ:PL    1/1:0,32:32:87.24:1169,87,0
2    158980577    rs6437135    A    T    128.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005756    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
2    158980662    rs6437136    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005756    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    158980689    rs6437137    T    C    51.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005756    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    158991346    rs144945330    C    T    955.31    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=3.328;DB;DP=67;Dels=0.0;FS=2.056;HRun=0;HaplotypeScore=4.9606;MQ=59.66;MQ0=0;MQRankSum=0.668;QD=14.26;ReadPosRankSum=0.411;SNPEFF_AMINO_ACID_CHANGE=R300W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_158991260_158992478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000005756    GT:AD:DP:GQ:PL    0/1:35,31:67:99:985,0,976
2    159028800    rs2222390    A    G    662.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283233    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:695,51,0
2    159077019    rs958671    A    C    530.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283233    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:563,45,0
2    159077407    rs11896761    G    A    124.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283233    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
2    159107659    rs10933464    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283233    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    159166069    rs7559772    T    C    1810.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=36.21;SNPEFF_AMINO_ACID_CHANGE=K177R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_159165945_159166151;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC148;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375617    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1843,141,0
2    159312733    rs1111212    C    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283233    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    159490456    rs917242    C    A    374.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PKP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389757    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:408,30,0
2    159498850    rs2253652    A    G    213.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PKP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494945    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
2    159498940    rs2253537    A    T    722.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PKP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494945    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:756,57,0
2    159520085    rs3771679    G    C    242.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PKP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389756    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:275,21,0
2    159522879    rs2248854    C    G    1498.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PKP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389756    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1532,111,0
2    159530651    rs2711034    A    T    472.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PKP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495123    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:505,39,0
2    159663599    rs9869    T    C    1846.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_AMINO_ACID_CHANGE=L60P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_159663567_159663627;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309950    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1879,138,0
2    159672168    rs1515922    G    A    2124.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309950    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2157,160,0
2    159672252    rs61740878    G    A    2914.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.73;MQ0=0;QD=34.7;SNPEFF_AMINO_ACID_CHANGE=A81;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_159672217_159672505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309950    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2948,220,0
2    159672442    rs10016    G    A    524.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409042    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:558,42,0
2    159718996    rs10169584    C    T    4367.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.048;DB;DP=131;Dels=0.0;FS=2.765;HRun=0;HaplotypeScore=0.0;MQ=47.92;MQ0=2;MQRankSum=-1.681;QD=33.34;ReadPosRankSum=0.183;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPL1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:3,128:131:99:4368,292,0
2    159731466    rs10186922    A    G    5103.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.88;MQ0=0;QD=32.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC064843.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454836    GT:AD:DP:GQ:PL    1/1:0,156:156:99:5104,403,0
2    159731808    rs13420835    G    A    2867.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.34;MQ0=0;QD=35.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC064843.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454836    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2900,214,0
2    159732154    rs12694985    A    T    1059.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.15;MQ0=0;QD=35.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC064843.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454836    GT:AD:DP:GQ:PL    1/1:0,30:30:84.23:1092,84,0
2    159954420    rs13414916    C    T    1404.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1438,108,0
2    159992560    rs35231270    T    TGTGC    238.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=102.0125;IndelType=I;MQ=58.68;MQ0=0;QD=19.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    1/1:4,7:12:29.95:281,30,0
2    159992572    rs35935932    C    T    197.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.25;MQ0=0;MQRankSum=1.561;QD=9.43;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    1/1:2,19:21:26.97:231,27,0
2    160005515    rs7583577    G    C    842.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8216;MQ=59.07;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    1/1:0,24:25:66.22:876,66,0
2    160019863    rs12466551    A    G    1465.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=N145S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160019794_160020057;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454300    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1498,114,0
2    160033174    rs759034    A    G    150.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:183,15,0
2    160034919    rs4665031    A    G    419.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
2    160035207    rs6748288    T    C    1544.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_AMINO_ACID_CHANGE=N575;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160035067_160035674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454300    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1578,120,0
2    160042430    rs13389867    G    A    445.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    1/1:0,16:16:39.07:478,39,0
2    160055448    rs13430891    T    A    982.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1016,75,0
2    160073762    rs1035056    A    G    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:73,0,28
2    160073768    rs1035057    A    G    30.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:61,0,32
2    160073881    rs1035058    C    T    532.12    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.292;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.837;QD=16.63;ReadPosRankSum=2.316;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:12,20:32:99:562,0,413
2    160073895    rs4665042    G    C    365.47    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=41;Dels=0.0;FS=5.825;HRun=0;HaplotypeScore=2.3972;MQ=60.0;MQ0=0;MQRankSum=-1.59;QD=8.91;ReadPosRankSum=-1.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:25,16:41:99:395,0,808
2    160074181    rs2288107    G    C    164.51    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.89;MQ0=0;MQRankSum=-0.833;QD=7.83;ReadPosRankSum=-0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:13,8:21:99:195,0,418
2    160074271    rs2288108    C    A    102.01    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.529;QD=8.5;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:7,5:12:99:132,0,257
2    160075886    rs3214491    G    GC    653.01    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.21;DB;DP=62;FS=1.098;HRun=3;HaplotypeScore=137.8329;IndelType=I;MQ=60.17;MQ0=0;MQRankSum=-0.259;QD=10.53;ReadPosRankSum=0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:41,21:62:99:692,0,1158
2    160076026    rs2303334    C    G    128.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=12.82;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:5,5:10:99:158,0,174
2    160076077    rs2303335    T    A    146.54    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=58.05;MQ0=0;MQRankSum=-0.466;QD=12.21;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:5,6:12:99:177,0,164
2    160082354    rs12692544    C    T    168.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=16.82;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:4,6:10:99:198,0,139
2    160082364    rs34344829    A    G    112.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=14.0;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,134
2    160082384    rs13419975    T    A    98.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:3,4:7:94.36:129,0,94
2    160084224    rs2042494    G    A    148.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.8;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:5,5:10:99:178,0,153
2    160084263    rs2042495    A    G    141.01    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.261;DB;DP=17;Dels=0.0;FS=4.523;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.251;QD=8.29;ReadPosRankSum=-0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:11,6:17:99:171,0,397
2    160084534    rs2288111    A    G    682.43    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.719;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9258;MQ=59.54;MQ0=0;MQRankSum=0.553;QD=13.65;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:26,24:50:99:712,0,897
2    160087535    rs3821301    T    G    475.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.486;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.019;QD=14.85;ReadPosRankSum=1.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:16,16:32:99:505,0,504
2    160092703    rs72203422    T    TA    189.64    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.581;DB;DP=34;FS=0.0;HRun=12;HaplotypeScore=99.8444;IndelType=I;MQ=59.64;MQ0=0;MQRankSum=0.519;QD=5.58;ReadPosRankSum=0.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263635    GT:AD:DP:GQ:PL    0/1:21,12:34:99:229,0,250
2    160104896    rs73004952    C    A    453.49    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.104;DB;DP=46;Dels=0.0;FS=11.996;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-1.272;QD=9.86;ReadPosRankSum=-1.429;SNPEFF_AMINO_ACID_CHANGE=P328;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160104883_160105023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:28,18:46:99:483,0,879
2    160112881    rs7591849    G    T    1534.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_AMINO_ACID_CHANGE=R228S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160112707_160112886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1568,117,0
2    160114437    rs3213715    G    A    341.10    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.115;DB;DP=25;Dels=0.0;FS=6.455;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.082;QD=13.64;ReadPosRankSum=1.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:13,12:25:99:371,0,417
2    160116281    rs4665052    A    G    111.76    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.717;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-1.177;QD=6.21;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:11,7:18:99:142,0,336
2    160128202    rs11891627    A    C    808.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.932;DB;DP=60;Dels=0.0;FS=4.433;HRun=2;HaplotypeScore=1.8316;MQ=60.0;MQ0=0;MQRankSum=0.523;QD=13.47;ReadPosRankSum=-0.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:30,30:60:99:838,0,905
2    160128343    rs11902271    C    A    393.93    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.242;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.034;QD=17.91;ReadPosRankSum=1.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:8,14:22:99:424,0,273
2    160128520    rs7602019    A    G    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    160132089    rs16843852    T    G    1337.54    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.469;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;MQRankSum=-0.744;QD=11.94;ReadPosRankSum=0.284;SNPEFF_AMINO_ACID_CHANGE=K215T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160132057_160132149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:58,54:112:99:1368,0,1775
2    160132196    rs35620648    A    AC    972.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=7;HaplotypeScore=82.2974;IndelType=I;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    1/1:10,28:38:84.26:1014,84,0
2    160136214    rs13399245    T    C    495.78    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=35;Dels=0.0;FS=6.41;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.974;QD=14.17;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:17,18:35:99:526,0,596
2    160136337    rs174264    G    A    1906.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=P173L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160136272_160136456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1940,141,0
2    160139048    rs10490001    C    T    301.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.306;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.55;QD=15.05;ReadPosRankSum=0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDSUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358147    GT:AD:DP:GQ:PL    0/1:10,10:20:99:331,0,342
2    160176943    rs174229    A    C    1134.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548440    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1168,87,0
2    160182074    rs440241    T    A    555.33    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=27;Dels=0.0;FS=3.9;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.518;QD=19.83;ReadPosRankSum=-0.962;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474437    GT:AD:DP:GQ:PL    0/1:11,16:27:99:585,0,342
2    160182302    rs415793    C    T    1166.18    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.772;DB;DP=106;Dels=0.0;FS=0.753;HRun=1;HaplotypeScore=1.9731;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=11.0;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=S1924N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160182164_160182429;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:65,41:106:99:1196,0,2101
2    160203934    rs965163    A    C    620.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=21.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    1/1:0,17:29:48.16:654,48,0
2    160231108    rs6742788    A    G    69.43    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=9.92;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,139
2    160231317    rs73967854    A    G    306.20    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.326;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=14.58;ReadPosRankSum=-1.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:8,13:21:99:336,0,275
2    160231354    rs17577396    T    G    178.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=14.88;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:6,6:12:99:209,0,212
2    160239112    rs967997    T    C    103.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.31;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=K1221;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160239070_160239313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:2,4:6:62.59:134,0,63
2    160239378    rs2302927    A    G    280.57    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.07;MQ0=0;MQRankSum=-0.231;QD=21.58;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485917    GT:AD:DP:GQ:PL    0/1:4,9:13:91.65:311,0,92
2    160240333    rs13399308    G    A    79.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.92;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485917    GT:AD:DP:GQ:PL    0/1:2,3:5:69.72:110,0,70
2    160241936    rs1469015    A    G    381.98    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=2.857;DB;DP=20;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-1.171;QD=19.1;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:7,13:20:99:412,0,149
2    160241998    rs5835743    C    CTT    175.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=9;HaplotypeScore=49.9408;IndelType=I;MQ=57.47;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    1/1:2,5:7:15.05:217,15,0
2    160245640    rs77557920    A    C    30.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.11;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:3,2:5:60.54:61,0,111
2    160261721    rs35567166    T    C    57.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=61.53;MQ0=0;MQRankSum=-0.937;QD=8.19;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:3,4:7:87.29:87,0,104
2    160285060    rs57144725    C    T    210.88    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.493;QD=16.22;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546335    GT:AD:DP:GQ:PL    0/1:6,7:13:99:241,0,202
2    160285575    rs12473781    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546335    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
2    160285660    rs10754963    T    A    529.36    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.236;DB;DP=25;Dels=0.0;FS=13.945;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.425;QD=21.17;ReadPosRankSum=-0.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546335    GT:AD:DP:GQ:PL    0/1:9,16:25:99:559,0,196
2    160289911    rs10187471    A    G    404.31    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=34;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=0.208;QD=11.89;ReadPosRankSum=0.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467184    GT:AD:DP:GQ:PL    0/1:19,15:34:99:434,0,620
2    160294779    rs3213791    T    C    237.46    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DB;DP=25;Dels=0.0;FS=2.072;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.425;QD=9.5;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482503    GT:AD:DP:GQ:PL    0/1:16,9:25:99:267,0,452
2    160294842    rs3213790    A    G    352.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.334;DB;DP=30;Dels=0.0;FS=6.043;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.191;QD=11.75;ReadPosRankSum=0.995;SNPEFF_AMINO_ACID_CHANGE=L359S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160294814_160295206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546335    GT:AD:DP:GQ:PL    0/1:18,12:30:99:382,0,605
2    160295297    rs2302923    C    A    1436.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=36.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1470,111,0
2    160295732    rs13417010    C    T    795.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.389;DB;DP=60;Dels=0.0;FS=2.957;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.288;QD=13.26;ReadPosRankSum=-0.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:30,30:60:99:825,0,787
2    160304741    rs12470533    A    T    521.07    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=39;Dels=0.0;FS=1.594;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.029;QD=13.36;ReadPosRankSum=-0.496;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437839    GT:AD:DP:GQ:PL    0/1:19,20:39:99:551,0,612
2    160310246    rs10202670    A    G    425.19    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;MQRankSum=0.648;QD=19.33;ReadPosRankSum=1.263;SNPEFF_AMINO_ACID_CHANGE=M71T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160310124_160310312;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:8,14:22:99:455,0,262
2    160335315    rs72947590    T    C    178.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=17.84;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343439    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,134
2    160585398    rs3732289    G    C    116.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.42;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259050    GT:AD:DP:GQ:PL    0/1:2,4:6:51.55:147,0,52
2    160585740    rs3821299    C    A    247.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.002;QD=16.5;ReadPosRankSum=1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259050    GT:AD:DP:GQ:PL    0/1:6,9:15:99:277,0,168
2    160602258    rs59109898    A    G    433.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.369;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=10.32;ReadPosRankSum=1.538;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421037    GT:AD:DP:GQ:PL    0/1:24,18:42:99:463,0,822
2    160604452    rs11555185    C    T    632.63    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.718;DB;DP=53;Dels=0.0;FS=2.535;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.864;QD=11.94;ReadPosRankSum=-1.246;SNPEFF_AMINO_ACID_CHANGE=D161;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160604316_160605414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539065    GT:AD:DP:GQ:PL    0/1:32,21:53:99:663,0,943
2    160604812    rs1427329    C    T    410.92    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=2.434;DB;DP=43;Dels=0.0;FS=15.726;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.319;QD=9.56;ReadPosRankSum=1.134;SNPEFF_AMINO_ACID_CHANGE=P281;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160604316_160605414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539065    GT:AD:DP:GQ:PL    0/1:28,15:43:99:441,0,920
2    160605268    rs1365803    T    C    6898.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DB;DP=222;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=7.028;MQ=59.63;MQ0=0;MQRankSum=1.178;QD=31.07;ReadPosRankSum=-0.34;SNPEFF_AMINO_ACID_CHANGE=P433;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160604316_160605414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539065    GT:AD:DP:GQ:PL    1/1:1,221:222:99:6899,519,0
2    160619233    rs7569562    T    G    155.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259050    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:188,15,0
2    160623590    rs12617546    G    A    33.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.74;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259053    GT:AD:DP:GQ:PL    0/1:3,2:5:63.69:64,0,110
2    160634564    rs35013477    ACC    A    148.66    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.667;DB;DP=15;FS=0.0;HRun=3;HaplotypeScore=73.4429;IndelType=D;MQ=55.99;MQ0=0;MQRankSum=-1.467;QD=9.91;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259053    GT:AD:DP:GQ:PL    0/1:10,5:15:99:188,0,458
2    160637267    rs2303552    C    A    170.53    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=8.98;ReadPosRankSum=-2.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259053    GT:AD:DP:GQ:PL    0/1:11,8:19:99:201,0,398
2    160637324    rs2303551    A    G    1214.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=58.71;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259053    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1247,99,0
2    160637621    rs2303550    G    A    136.83    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=12.44;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259053    GT:AD:DP:GQ:PL    0/1:6,5:11:99:167,0,207
2    160639970    rs2114626    T    C    688.12    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.704;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=12.98;ReadPosRankSum=2.044;SNPEFF_AMINO_ACID_CHANGE=S1611;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160639870_160639980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505052    GT:AD:DP:GQ:PL    0/1:26,27:53:99:718,0,705
2    160663435    rs12463589    T    C    320.68    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=35;Dels=0.0;FS=1.64;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.608;QD=9.16;ReadPosRankSum=1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:23,12:35:99:351,0,712
2    160663678    rs7566887    T    C    747.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    1/1:0,25:25:66.17:780,66,0
2    160664697    rs1346327    A    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
2    160672235    rs7577691    T    A    96.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:2,4:6:64.36:126,0,64
2    160673526    rs2059696    A    G    439.06    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.145;QD=14.16;ReadPosRankSum=1.808;SNPEFF_AMINO_ACID_CHANGE=Y1391H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160673317_160673543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:17,14:31:99:469,0,503
2    160676427    rs12692566    C    A    992.49    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=58;Dels=0.0;FS=6.984;HRun=1;HaplotypeScore=0.0;MQ=59.87;MQ0=0;MQRankSum=-0.218;QD=17.11;ReadPosRankSum=0.39;SNPEFF_AMINO_ACID_CHANGE=K1321N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160676237_160676431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:27,31:58:99:1022,0,864
2    160676445    rs36120198    A    AT    663.34    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.471;DB;DP=46;FS=0.0;HRun=6;HaplotypeScore=180.4491;IndelType=I;MQ=60.07;MQ0=0;MQRankSum=-0.013;QD=14.42;ReadPosRankSum=-2.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:24,22:46:99:702,0,458
2    160688351    rs6755783    C    T    486.30    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DB;DP=36;Dels=0.0;FS=3.122;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.665;QD=13.14;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:19,17:36:99:516,0,665
2    160697636    rs11690117    G    T    58.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.37;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:4,3:7:88.61:89,0,149
2    160698700    rs41265133    A    C    361.47    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.881;DB;DP=30;Dels=0.0;FS=2.418;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.636;QD=12.05;ReadPosRankSum=1.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:17,13:30:99:391,0,536
2    160708645    rs2162500    C    G    357.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.945;QD=16.27;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:10,12:22:99:388,0,361
2    160710216    rs41264211    A    G    521.83    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.786;DB;DP=52;Dels=0.0;FS=3.896;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.331;QD=10.04;ReadPosRankSum=0.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:28,23:52:99:552,0,807
2    160710922    rs2729705    T    C    694.18    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.066;DB;DP=60;Dels=0.0;FS=5.852;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.296;QD=11.57;ReadPosRankSum=-0.406;SNPEFF_AMINO_ACID_CHANGE=A848;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160710871_160711046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:34,26:60:99:724,0,935
2    160711045    rs3951216    G    C    451.53    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.003;DB;DP=26;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.283;QD=17.37;ReadPosRankSum=-0.489;SNPEFF_AMINO_ACID_CHANGE=D807E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160710871_160711046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:12,14:26:99:482,0,356
2    160711556    rs975490    T    G    282.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
2    160729134    rs1397705    A    C    2708.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.515;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2741,202,0
2    160729186    rs10168271    T    C    605.85    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.373;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.675;QD=18.93;ReadPosRankSum=1.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:10,22:32:99:636,0,275
2    160729239    rs41264215    A    G    247.75    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.428;QD=16.52;ReadPosRankSum=1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:7,8:15:99:278,0,235
2    160734668    rs17828159    T    C    74.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.37;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,102
2    160737495    rs2729712    A    C    694.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=38.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:728,54,0
2    160737560    rs2729711    G    T    2153.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5239;MQ=59.28;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    1/1:0,63:64:99:2187,166,0
2    160737857    rs3835165    T    TGTA    444.08    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=39.2464;IndelType=I;MQ=58.33;MQ0=0;MQRankSum=0.386;QD=31.72;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:6,8:14:99:483,0,243
2    160738509    rs66496937    A    G    142.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
2    160743040    rs2271381    T    A    598.67    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.19;QD=15.75;ReadPosRankSum=0.307;SNPEFF_AMINO_ACID_CHANGE=E268D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160742931_160743041;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY75-CD302;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504764    GT:AD:DP:GQ:PL    0/1:18,20:38:99:629,0,524
2    160805993    rs6726923    C    G    214.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:247,21,0
2    160807742    rs952184    A    T    689.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:722,54,0
2    160808075    rs3828323    C    T    401.56    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=3.616;DB;DP=45;Dels=0.0;FS=3.006;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=8.92;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=G1106S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160807851_160808089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:30,14:45:99:432,0,823
2    160808255    rs6432569    A    G    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
2    160832996    rs3749114    A    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.12;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,113
2    160833188    rs2715918    A    G    588.36    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=56;Dels=0.0;FS=1.045;HRun=0;HaplotypeScore=1.3302;MQ=59.59;MQ0=0;MQRankSum=-0.77;QD=10.51;ReadPosRankSum=-1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:31,25:56:99:618,0,1073
2    160840370    rs5835784    AC    A    254.73    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=3.33;DB;DP=22;FS=3.424;HRun=4;HaplotypeScore=51.33;IndelType=D;MQ=60.49;MQ0=0;MQRankSum=0.297;QD=11.58;ReadPosRankSum=0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:12,10:22:99:294,0,428
2    160862094    rs2667004    G    A    172.16    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=15.65;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:5,6:11:99:202,0,138
2    160872989    rs143201024    GGT    G    331.41    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.532;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=100.6588;IndelType=D;MQ=57.45;MQ0=1;MQRankSum=0.133;QD=16.57;ReadPosRankSum=1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:9,11:19:99:370,0,342
2    160873021    rs2715939    G    A    454.79    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=1.5;QD=13.38;ReadPosRankSum=-0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:15,19:34:99:485,0,482
2    160873270    rs2667040    A    G    462.09    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=4.652;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.578;MQ=59.65;MQ0=0;MQRankSum=0.878;QD=13.2;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:19,16:35:99:492,0,507
2    160873294    rs35931317    T    TA    183.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DB;DP=20;FS=0.0;HRun=8;HaplotypeScore=84.0242;IndelType=I;MQ=59.39;MQ0=0;MQRankSum=-0.133;QD=9.2;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:12,8:20:99:223,0,221
2    160876827    rs1511213    A    G    321.63    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.61;QD=18.92;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:7,10:17:99:352,0,235
2    160885418    rs35771982    G    C    632.29    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.376;QD=13.45;ReadPosRankSum=-0.094;SNPEFF_AMINO_ACID_CHANGE=H300D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160885361_160885474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:21,25:46:99:662,0,636
2    160885442    rs3749117    T    C    557.95    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.871;DB;DP=40;Dels=0.0;FS=1.238;HRun=2;HaplotypeScore=0.5784;MQ=59.42;MQ0=0;MQRankSum=0.515;QD=13.95;ReadPosRankSum=-0.244;SNPEFF_AMINO_ACID_CHANGE=M292V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160885361_160885474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:19,21:40:99:588,0,559
2    160889673    rs2203053    G    A    655.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.883;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.3;MQ0=0;MQRankSum=0.363;QD=19.86;ReadPosRankSum=-0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:11,22:33:99:685,0,376
2    160898583    .    G    T    34.68    QDFilter2    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.596;DP=61;Dels=0.0;FS=29.538;HRun=2;HaplotypeScore=1.4972;MQ=56.9;MQ0=0;MQRankSum=-0.582;QD=0.57;ReadPosRankSum=-0.326;SNPEFF_AMINO_ACID_CHANGE=T207K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160898536_160898709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:44,17:61:64.67:65,0,1056
2    160901517    rs4665143    A    G    579.57    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.814;DB;DP=40;Dels=0.0;FS=1.357;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.443;QD=14.49;ReadPosRankSum=-2.013;SNPEFF_AMINO_ACID_CHANGE=S87;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_160901285_160901668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    0/1:16,23:40:99:610,0,420
2    160919020    rs3749119    C    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_160918806_160919121;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLA2R1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283243    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
2    160958349    rs34330288    GA    G    421.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=90.3262;IndelType=D;MQ=60.79;MQ0=0;QD=17.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283249    GT:AD:DP:GQ:PL    1/1:1,23:24:59.74:463,60,0
2    160968743    rs66470452    CA    C    436.51    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=31;FS=0.0;HRun=3;HaplotypeScore=81.8134;IndelType=D;MQ=59.61;MQ0=0;MQRankSum=-0.995;QD=14.08;ReadPosRankSum=-1.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283249    GT:AD:DP:GQ:PL    0/1:16,15:31:99:476,0,585
2    160993800    rs35720878    A    T    140.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=17.52;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485635    GT:AD:DP:GQ:PL    0/1:3,5:8:97.81:170,0,98
2    161028992    rs1037694    T    C    457.07    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.932;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.475;QD=14.28;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283249    GT:AD:DP:GQ:PL    0/1:18,14:32:99:487,0,545
2    161029218    rs2305818    G    A    1261.79    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.785;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.1452;MQ=59.61;MQ0=0;MQRankSum=0.361;QD=11.9;ReadPosRankSum=-0.222;SNPEFF_AMINO_ACID_CHANGE=D219;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_161029080_161029241;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428609    GT:AD:DP:GQ:PL    0/1:56,49:106:99:1292,0,1762
2    161135000    rs1870106    G    C    138.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=7.16;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=10.64;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348849    GT:AD:DP:GQ:PL    0/1:6,7:13:99:168,0,177
2    161169828    rs10929977    C    G    146.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=58.71;MQ0=0;MQRankSum=-0.047;QD=8.16;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348849    GT:AD:DP:GQ:PL    0/1:12,6:18:99:177,0,382
2    161174693    rs1430    C    T    487.02    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=51.57;MQ0=0;MQRankSum=1.553;QD=11.07;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=T66;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_161174680_161174738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409075    GT:AD:DP:GQ:PL    0/1:20,24:44:99:517,0,544
2    161223688    rs12692594    T    A    245.62    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.669;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.373;QD=11.7;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348849    GT:AD:DP:GQ:PL    0/1:10,11:21:99:276,0,317
2    161797329    rs1524626    C    T    42.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.57;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:72,0,33
2    161797513    rs1524625    A    G    828.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=48;Dels=0.0;FS=4.361;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.011;QD=17.25;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,32:48:99:858,0,511
2    162059817    rs1267075    G    A    130.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259075    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
2    162059969    rs11884495    A    T    1327.71    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=89;Dels=0.0;FS=0.905;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.882;QD=14.92;ReadPosRankSum=-0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259075    GT:AD:DP:GQ:PL    0/1:45,44:89:99:1358,0,1365
2    162061565    rs1267050    C    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403609    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    162091836    rs3754970    T    C    723.64    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.282;DB;DP=61;Dels=0.0;FS=0.982;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.428;QD=11.86;ReadPosRankSum=0.802;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429217    GT:AD:DP:GQ:PL    0/1:33,27:61:99:754,0,1107
2    162175290    rs1116165    T    C    2777.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409682    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2811,217,0
2    162224193    rs76686031    G    GT    1683.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=5;HaplotypeScore=91.9955;IndelType=I;MQ=61.66;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409682    GT:AD:DP:GQ:PL    1/1:1,44:45:99:1725,132,0
2    162242226    rs10193429    C    T    173.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409682    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
2    162247772    rs1921674    C    T    373.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409682    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:406,30,0
2    162251437    rs11886577    T    C    82.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409682    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
2    162280748    rs890076    G    A    95.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=9.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411412    GT:AD:DP:GQ:PL    1/1:0,8:10:12.02:128,12,0
2    162359983    rs12620974    T    C    2501.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.89;MQ0=0;QD=32.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482861    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2535,196,0
2    162661031    .    G    A    1963.97    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.275;DP=125;Dels=0.0;FS=2.313;HRun=0;HaplotypeScore=2.5698;MQ=59.63;MQ0=0;MQRankSum=-1.43;QD=15.71;ReadPosRankSum=-0.614;SNPEFF_AMINO_ACID_CHANGE=R68H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_162660959_162661105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272716    GT:AD:DP:GQ:PL    0/1:55,70:125:99:1994,0,1570
2    162730312    rs35292746    T    C    365.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272716    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:399,30,0
2    162757676    rs6754546    A    G    678.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493021    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:711,54,0
2    162803883    rs13421039    C    T    174.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272716    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
2    162813807    rs10221808    A    G    1930.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.859;DB;DP=60;Dels=0.0;FS=5.049;HRun=0;HaplotypeScore=3.8355;MQ=59.23;MQ0=0;MQRankSum=0.272;QD=32.17;ReadPosRankSum=0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272716    GT:AD:DP:GQ:PL    1/1:2,57:60:99:1963,115,0
2    162852079    rs4140685    G    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360534    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    162873188    rs2970931    T    C    982.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468903    GT:AD:DP:GQ:PL    1/1:0,25:25:75.23:1016,75,0
2    162876828    rs71907837    CA    C    120.75    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=18;FS=0.0;HRun=14;HaplotypeScore=152.9449;IndelType=D;MQ=38.13;MQ0=0;MQRankSum=-0.588;QD=6.71;ReadPosRankSum=0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360534    GT:AD:DP:GQ:PL    0/1:8,9:18:21.72:160,0,22
2    162877028    rs12692646    T    A    403.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360534    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:437,33,0
2    162879452    rs2302873    T    C    199.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360534    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
2    162890175    rs1558957    T    C    395.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.61;MQ0=0;QD=20.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461836    GT:AD:DP:GQ:PL    1/1:1,18:19:36.08:429,36,0
2    162890196    rs111263347    C    CA    215.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=12;HaplotypeScore=168.5189;IndelType=I;MQ=48.45;MQ0=0;QD=14.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461836    GT:AD:DP:GQ:PL    1/1:6,5:15:32.39:258,32,0
2    162890217    rs7608798    G    A    243.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.42;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461836    GT:AD:DP:GQ:PL    1/1:0,13:13:21.07:276,21,0
2    162891848    rs6432708    C    T    1186.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413651    GT:AD:DP:GQ:PL    1/1:0,35:35:93.27:1220,93,0
2    162894766    rs10930040    A    G    1264.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413651    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1297,99,0
2    162930725    rs13015258    T    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413651    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    163030336    rs3764917    T    C    727.37    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.908;DB;DP=75;Dels=0.0;FS=1.139;HRun=0;HaplotypeScore=0.9734;MQ=59.38;MQ0=0;MQRankSum=-0.766;QD=9.7;ReadPosRankSum=-0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000188790    GT:AD:DP:GQ:PL    0/1:43,32:75:99:757,0,1485
2    163128824    rs3747517    T    C    310.76    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.615;DB;DP=32;Dels=0.0;FS=1.393;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=9.71;ReadPosRankSum=1.304;SNPEFF_AMINO_ACID_CHANGE=H843R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_163128736_163128897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263642    GT:AD:DP:GQ:PL    0/1:20,12:32:99:341,0,664
2    163694878    rs4667768    C    G    377.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328032    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:411,33,0
2    163694886    rs4667769    G    A    370.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328032    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:403,30,0
2    164468328    rs2231901    G    T    226.19    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.244;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.464;QD=8.38;ReadPosRankSum=0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333129    GT:AD:DP:GQ:PL    0/1:15,12:27:99:256,0,548
2    165349459    rs1051160    G    A    692.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446413    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:726,54,0
2    165349463    rs11765    T    C    321.16    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.286;QD=14.6;ReadPosRankSum=1.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446413    GT:AD:DP:GQ:PL    0/1:12,10:22:99:351,0,390
2    165351208    rs1451892    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446413    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    165353712    rs8192673    C    T    385.68    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.66;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.303;QD=9.89;ReadPosRankSum=-0.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263915    GT:AD:DP:GQ:PL    0/1:24,15:39:99:416,0,884
2    165358655    rs7584035    T    A    70.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.08;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263915    GT:AD:DP:GQ:PL    0/1:3,4:7:99:101,0,107
2    165358672    rs4667463    A    G    291.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263915    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:325,27,0
2    165364887    rs8192674    G    A    418.50    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.623;QD=24.62;ReadPosRankSum=-1.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469573    GT:AD:DP:GQ:PL    0/1:4,13:17:91.40:448,0,91
2    165378427    rs13015232    C    A    601.87    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=31;Dels=0.0;FS=12.325;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.034;QD=19.42;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424693    GT:AD:DP:GQ:PL    0/1:12,19:31:99:632,0,403
2    165476253    rs61748245    A    T    1727.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7882;MQ=59.56;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=F32I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_165476197_165476467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRB14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424693    GT:AD:DP:GQ:PL    1/1:0,52:53:99:1761,138,0
2    165551404    rs17244632    G    A    709.77    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DB;DP=53;Dels=0.0;FS=1.078;HRun=1;HaplotypeScore=1.9765;MQ=60.0;MQ0=0;MQRankSum=1.104;QD=13.39;ReadPosRankSum=-0.96;SNPEFF_AMINO_ACID_CHANGE=T833I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_165550779_165552346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COBLL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375458    GT:AD:DP:GQ:PL    0/1:30,23:53:99:740,0,953
2    165557318    rs6712203    C    T    562.03    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.353;QD=13.71;ReadPosRankSum=-0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COBLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434366    GT:AD:DP:GQ:PL    0/1:22,19:41:99:592,0,788
2    165578581    rs6414069    A    G    1002.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COBLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456693    GT:AD:DP:GQ:PL    1/1:0,33:33:81.25:1035,81,0
2    165579159    rs6432802    G    C    360.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COBLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194871    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:394,30,0
2    165584407    rs12692743    C    T    536.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COBLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414843    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:569,42,0
2    165636332    rs355897    T    C    292.01    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.319;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.58;QD=9.73;ReadPosRankSum=-1.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COBLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194871    GT:AD:DP:GQ:PL    0/1:17,13:30:99:322,0,531
2    165809426    rs17353791    T    C    133.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303735    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
2    165811554    rs71902389    GA    G    33.43    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=16;HaplotypeScore=17.319;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=5.57;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303735    GT:AD:DP:GQ:PL    0/1:1,5:6:7.48:72,0,7
2    166012203    rs3731760    C    T    389.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.961;DB;DP=25;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.9734;MQ=59.07;MQ0=0;MQRankSum=0.465;QD=15.58;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283254    GT:AD:DP:GQ:PL    0/1:10,15:25:99:420,0,269
2    166152185    rs2075704    A    G    210.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
2    166153499    rs7593568    A    G    1034.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1067,78,0
2    166167166    rs7560348    T    A    105.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.15;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,143
2    166170127    rs2121371    T    C    2104.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486878    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2137,156,0
2    166172317    rs1838846    A    G    2654.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424833    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2688,217,0
2    166179650    rs1867864    C    T    421.23    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=42;Dels=0.0;FS=1.391;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.446;QD=10.03;ReadPosRankSum=1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    0/1:27,15:42:99:451,0,816
2    166221569    rs67198220    TG    T    61.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=23.6459;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=2.45;QD=6.12;ReadPosRankSum=0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    0/1:5,5:10:99:100,0,136
2    166224047    rs2304010    G    A    53.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
2    166226581    rs72874371    A    G    547.65    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.335;QD=21.06;ReadPosRankSum=-0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    0/1:6,20:26:99:578,0,175
2    166226978    rs2304012    A    G    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
2    166229922    rs6432821    T    C    1002.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1036,84,0
2    166229930    rs2304014    T    A    400.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.811;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=13.34;ReadPosRankSum=-0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    0/1:15,15:30:99:430,0,499
2    166234076    rs1864885    A    G    522.57    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=2.692;DB;DP=35;Dels=0.0;FS=1.917;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=14.93;ReadPosRankSum=-1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    0/1:11,24:35:99:553,0,325
2    166237497    rs7578237    T    C    133.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283256    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
2    166514594    rs10803800    A    G    80.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.12;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314499    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:111,0,67
2    166532660    rs777342    T    C    639.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=27.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314499    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:673,57,0
2    166535883    rs61738743    G    C    382.33    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.767;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.659;QD=9.8;ReadPosRankSum=-2.035;SNPEFF_AMINO_ACID_CHANGE=V460L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_166535211_166545917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314499    GT:AD:DP:GQ:PL    0/1:25,14:39:99:412,0,850
2    166611774    rs6705649    C    G    87.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412248    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    166615555    rs4667835    C    T    87.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392701    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:119,9,0
2    166621354    rs2113840    T    C    1877    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.56;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392701    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1910,141,0
2    166626606    rs4667836    G    A    129.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414977    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
2    166670948    rs68019364    C    T    1261.26    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.39;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=0.556;QD=11.57;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC009495.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408307    GT:AD:DP:GQ:PL    0/1:65,44:109:99:1291,0,1865
2    166671038    rs113668839    G    GGGAA    334.85    PASS    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=174.4548;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=3.166;QD=11.55;ReadPosRankSum=0.955;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC009495.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408307    GT:AD:DP:GQ:PL    0/1:23,6:29:99:374,0,371
2    166671061    rs75796012    A    G    298.24    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.493;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.29;MQ0=0;MQRankSum=-2.493;QD=14.2;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC009495.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408307    GT:AD:DP:GQ:PL    0/1:8,13:21:0.34:327,0,0
2    166780911    rs2163648    A    G    314.49    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.849;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.034;QD=26.21;ReadPosRankSum=1.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464374    GT:AD:DP:GQ:PL    0/1:3,9:12:86.12:344,0,86
2    166786973    rs1560597    A    C    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243344    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
2    166788336    rs7592429    T    C    885.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=T276A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_166788268_166788366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243344    GT:AD:DP:GQ:PL    1/1:0,28:28:66.22:919,66,0
2    166797444    rs12623658    T    A    255.24    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=17;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.055;QD=15.01;ReadPosRankSum=0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243344    GT:AD:DP:GQ:PL    0/1:6,11:17:99:285,0,200
2    166797450    rs7592392    C    A    485.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243344    GT:AD:DP:GQ:PL    1/1:0,19:19:48.12:519,48,0
2    166797646    rs1432273    C    T    1759.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=35.91;SNPEFF_AMINO_ACID_CHANGE=V201M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_166797537_166797694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243344    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1793,132,0
2    166799596    rs13000534    T    C    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243344    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
2    166799893    rs10930190    G    A    600.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243344    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:633,48,0
2    166801924    rs6432853    C    G    345.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476227    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:379,27,0
2    166810373    rs1347041    A    G    35.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=9.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TTC21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243344    GT:AD:DP:GQ:PL    1/1:0,4:4:6.01:67,6,0
2    166870600    rs568376    A    G    111.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
2    166871905    rs577306    C    A    69.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=11.56;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,107
2    166892444    rs67326210    TAAA    T    296.91    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=3.132;DB;DP=23;FS=0.0;HRun=15;HaplotypeScore=159.3829;IndelType=D;MQ=55.86;MQ0=0;MQRankSum=-1.154;QD=12.91;ReadPosRankSum=0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:10,12:23:99:336,0,453
2    166892788    rs2298771    C    T    523.86    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=1.399;DB;DP=53;Dels=0.0;FS=2.623;HRun=1;HaplotypeScore=1.5678;MQ=59.56;MQ0=0;MQRankSum=-0.235;QD=9.88;ReadPosRankSum=0.197;SNPEFF_AMINO_ACID_CHANGE=A1039T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_166892558_166893040;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409050    GT:AD:DP:GQ:PL    0/1:35,18:53:99:554,0,1205
2    166893081    rs7601520    G    A    474.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.638;DB;DP=25;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.028;QD=18.98;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:10,15:25:99:505,0,238
2    166894165    rs67819222    CT    C    56.21    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;FS=0.0;HRun=9;HaplotypeScore=95.7297;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=-0.4;QD=4.01;ReadPosRankSum=1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:9,5:14:95.24:95,0,270
2    166894209    rs116647099    T    C    687.24    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.44;QD=18.09;ReadPosRankSum=0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:17,21:38:99:717,0,559
2    166894230    rs2020318    T    C    703.12    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=3.759;DB;DP=55;Dels=0.0;FS=3.602;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.28;QD=12.78;ReadPosRankSum=0.484;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:31,24:55:99:733,0,1039
2    166895761    rs1019723    A    G    121.72    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=0.736;QD=20.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:152,0,22
2    166895913    rs72051642    CTTT    C    209.81    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=36;FS=0.0;HRun=17;HaplotypeScore=274.0193;IndelType=D;MQ=56.0;MQ0=0;MQRankSum=0.215;QD=5.83;ReadPosRankSum=2.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:13,13:36:99:249,0,602
2    166896143    rs2126152    T    G    316.77    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.101;QD=13.2;ReadPosRankSum=0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:13,11:24:99:347,0,425
2    166896178    rs490317    C    T    108.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=10.82;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:5,5:10:99:138,0,175
2    166897864    rs6432860    A    G    1417.71    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.104;DB;DP=103;Dels=0.0;FS=13.934;HRun=0;HaplotypeScore=1.788;MQ=56.6;MQ0=0;MQRankSum=0.572;QD=13.76;ReadPosRankSum=-0.378;SNPEFF_AMINO_ACID_CHANGE=V736;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_166897741_166897979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409050    GT:AD:DP:GQ:PL    0/1:51,52:103:99:1448,0,1448
2    166897989    rs11394960    G    GA    1062.17    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=0.861;DB;DP=140;FS=3.212;HRun=14;HaplotypeScore=794.264;IndelType=I;MQ=56.27;MQ0=0;MQRankSum=-0.436;QD=7.59;ReadPosRankSum=-4.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:104,26:140:99:1101,0,446
2    166900606    rs6753355    A    C    223.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.683;QD=13.96;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:8,8:16:99:253,0,239
2    166902103    rs992894    A    T    82.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    166903188    rs538921    A    C    571.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    1/1:1,16:17:48.12:605,48,0
2    166903445    rs7580482    T    C    1386.31    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=76;Dels=0.0;FS=4.97;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.746;QD=18.24;ReadPosRankSum=0.006;SNPEFF_AMINO_ACID_CHANGE=V404;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_166903280_166903486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:24,52:76:99:1416,0,758
2    166904346    rs1461193    G    A    397.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.115;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.455;QD=11.35;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:21,14:35:99:427,0,747
2    166905480    rs994399    G    A    223.50    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.008;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.373;QD=6.21;ReadPosRankSum=-1.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:25,11:36:99:253,0,719
2    166909559    rs3812719    C    A    956.02    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.216;DB;DP=73;Dels=0.0;FS=0.981;HRun=0;HaplotypeScore=1.7621;MQ=60.0;MQ0=0;MQRankSum=0.186;QD=13.1;ReadPosRankSum=0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:39,34:73:99:986,0,1189
2    166915014    rs8191987    A    G    214.33    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.304;QD=10.72;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:11,9:20:99:244,0,303
2    166915335    rs10930201    C    A    35.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.94;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:66,0,66
2    166929347    .    C    CTTT    123.49    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DP=24;FS=0.0;HRun=20;HaplotypeScore=241.282;IndelType=I;MQ=49.42;MQ0=0;MQRankSum=0.925;QD=5.15;ReadPosRankSum=-2.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    0/1:15,6:24:25.33:163,0,25
2    166930214    rs566839    T    A    761.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=36.27;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303395    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:795,57,0
2    167060449    rs10180721    A    T    770.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:803,60,0
2    167060980    rs77944059    GAAAC    G    3610    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.0;HRun=0;HaplotypeScore=400.4085;IndelType=D;MQ=57.96;MQ0=0;QD=45.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:11,68:79:99:3610,205,0
2    167082978    rs7595255    T    C    195.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:229,18,0
2    167084429    rs3793936    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    167085079    rs68017887    GTT    G    1139.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=4;HaplotypeScore=285.2433;IndelType=D;MQ=47.12;MQ0=0;QD=40.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:5,23:28:84.27:1182,84,0
2    167085124    rs10199799    T    G    2436.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=50.99;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2470,199,0
2    167085141    rs58519838    CTT    C    4954.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.0;HRun=2;HaplotypeScore=704.921;IndelType=D;MQ=53.42;MQ0=0;QD=48.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:3,99:102:99:4955,307,0
2    167089713    .    A    ATATG    698.94    PASS    AC=2;AF=1.00;AN=2;DP=10;FS=0.0;HRun=0;HaplotypeScore=35.0418;IndelType=I;MQ=58.11;MQ0=0;QD=69.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:0,9:10:30.10:741,30,0
2    167090042    rs722204    G    A    811.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:845,63,0
2    167099158    rs6746030    A    G    2661.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6543;MQ=59.12;MQ0=0;QD=35.97;SNPEFF_AMINO_ACID_CHANGE=W1150R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_167099012_167099166;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409672    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2695,202,0
2    167137120    rs4525717    C    T    634.85    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.313;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.772;QD=12.7;ReadPosRankSum=-1.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452182    GT:AD:DP:GQ:PL    0/1:28,22:50:99:665,0,978
2    167149693    rs7588632    G    A    282.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.241;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.375;QD=11.76;ReadPosRankSum=0.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    0/1:12,12:24:99:312,0,397
2    167159946    rs13017637    C    T    55.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=9.25;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    0/1:3,3:6:85.47:85,0,105
2    167160029    rs12994338    T    C    31.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
2    167162277    rs4429487    G    A    1714.53    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=4.513;DB;DP=134;Dels=0.0;FS=0.709;HRun=0;HaplotypeScore=5.3459;MQ=59.48;MQ0=0;MQRankSum=-1.817;QD=12.79;ReadPosRankSum=0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    0/1:73,60:134:99:1745,0,2081
2    167163043    rs9646771    T    C    408.54    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.61;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.67;MQ0=0;MQRankSum=0.902;QD=7.3;ReadPosRankSum=-0.319;SNPEFF_AMINO_ACID_CHANGE=P13;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_167163020_167163081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452182    GT:AD:DP:GQ:PL    0/1:38,18:56:99:439,0,1089
2    167163663    rs4447616    C    T    259.10    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.373;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=12.34;ReadPosRankSum=1.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    0/1:11,10:21:99:289,0,390
2    167167892    rs6432899    T    A    34    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=2.62;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    0/1:9,4:13:63.99:64,0,332
2    167167917    rs6432900    T    C    222.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=10.59;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    0/1:12,9:21:99:252,0,420
2    167168093    rs6432901    C    T    2156.35    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.766;DB;DP=163;Dels=0.0;FS=2.81;HRun=1;HaplotypeScore=4.5537;MQ=59.89;MQ0=0;MQRankSum=0.765;QD=13.23;ReadPosRankSum=0.008;SNPEFF_AMINO_ACID_CHANGE=Q58;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_167168009_167168316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303354    GT:AD:DP:GQ:PL    0/1:92,71:163:99:2186,0,2992
2    167266465    .    G    A    876.65    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.164;DP=68;Dels=0.0;FS=0.977;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.051;QD=12.89;ReadPosRankSum=-1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:36,32:68:99:907,0,1143
2    167273037    rs10930221    C    G    74.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.69;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:105,0,30
2    167279922    rs6738031    C    A    1670.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=M958I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_167279769_167279942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1704,129,0
2    167284520    rs3748895    T    C    493.87    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.64;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.687;QD=11.22;ReadPosRankSum=0.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419992    GT:AD:DP:GQ:PL    0/1:25,19:44:99:524,0,811
2    167300262    rs66554856    GAC    G    168.50    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=50.2943;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=-0.869;QD=10.53;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:10,6:16:99:208,0,280
2    167313451    rs11888208    T    C    653.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.257;DB;DP=56;Dels=0.0;FS=1.098;HRun=0;HaplotypeScore=1.4679;MQ=57.99;MQ0=0;MQRankSum=0.935;QD=11.66;ReadPosRankSum=0.24;SNPEFF_AMINO_ACID_CHANGE=I407V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_167313380_167313586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:32,24:56:99:683,0,859
2    167322522    rs7593452    G    A    597.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.318;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.129;QD=22.14;ReadPosRankSum=1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:9,18:27:99:628,0,302
2    167327064    rs12992062    A    G    227.23    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=16.23;ReadPosRankSum=1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:6,8:14:99:257,0,215
2    167328750    rs2293567    C    T    1326.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    1/1:0,36:37:99:1359,105,0
2    167328754    rs36063236    C    T    458.31    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.655;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.39;MQ0=0;MQRankSum=-0.139;QD=12.06;ReadPosRankSum=-1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:22,15:38:99:488,0,788
2    167333840    rs16852172    G    A    78.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.11;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:2,4:6:61.32:109,0,61
2    167334085    rs7565062    G    T    1545.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_AMINO_ACID_CHANGE=T41N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_167333973_167334220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1578,117,0
2    167334234    rs16852181    T    C    630.79    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.286;DB;DP=54;Dels=0.0;FS=6.166;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.455;QD=11.68;ReadPosRankSum=-2.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259060    GT:AD:DP:GQ:PL    0/1:31,23:54:99:661,0,1023
2    167759948    rs7599152    C    T    432.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.17;MQ0=0;MQRankSum=-0.766;QD=15.44;ReadPosRankSum=-1.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XIRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409043    GT:AD:DP:GQ:PL    0/1:12,16:28:99:462,0,420
2    167760451    rs5836125    AG    A    288.34    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=2.946;DB;DP=27;FS=3.132;HRun=1;HaplotypeScore=115.4201;IndelType=D;MQ=59.5;MQ0=0;MQRankSum=0.899;QD=10.68;ReadPosRankSum=-0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XIRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295237    GT:AD:DP:GQ:PL    0/1:16,11:27:99:327,0,555
2    168572093    rs10168562    G    T    1665.14    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=153;Dels=0.0;FS=3.165;HRun=1;HaplotypeScore=1.9248;MQ=59.5;MQ0=0;MQRankSum=-0.979;QD=10.88;ReadPosRankSum=-0.255;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTAGE14P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397819    GT:AD:DP:GQ:PL    0/1:89,64:153:99:1695,0,2899
2    168572098    rs10192010    A    G    1780.37    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.685;DB;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9248;MQ=59.5;MQ0=0;MQRankSum=0.284;QD=11.64;ReadPosRankSum=0.135;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTAGE14P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397819    GT:AD:DP:GQ:PL    0/1:90,63:153:99:1810,0,2962
2    168572438    rs4667969    G    A    2643.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.95;MQ0=2;QD=33.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTAGE14P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397819    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2677,211,0
2    168726659    rs12466817    A    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305861    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    168931610    rs3739115    G    A    1033.08    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.663;DB;DP=75;Dels=0.0;FS=8.828;HRun=0;HaplotypeScore=1.7465;MQ=59.44;MQ0=0;MQRankSum=0.005;QD=13.77;ReadPosRankSum=-0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355999    GT:AD:DP:GQ:PL    0/1:41,34:75:99:1063,0,1288
2    168985875    rs12618884    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355999    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    168986154    rs925846    A    G    2437.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355999    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2470,178,0
2    168986376    rs2246258    T    G    726.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355999    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:759,57,0
2    169020404    .    C    G    273.24    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.279;DP=28;Dels=0.0;FS=4.301;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.76;ReadPosRankSum=0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355999    GT:AD:DP:GQ:PL    0/1:19,9:28:99:303,0,631
2    169487610    rs67474503    GT    G    1133.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.577;DB;DP=66;FS=0.0;HRun=11;HaplotypeScore=260.6733;IndelType=D;MQ=59.78;MQ0=0;MQRankSum=0.102;QD=17.17;ReadPosRankSum=-0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305747    GT:AD:DP:GQ:PL    1/1:15,50:66:99:1175,120,0
2    169487668    rs4667585    A    C    898.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305747    GT:AD:DP:GQ:PL    1/1:0,28:28:69.23:932,69,0
2    169681278    rs11374385    T    TTTTGTTTG    541.70    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=135.6499;IndelType=I;MQ=54.77;MQ0=0;MQRankSum=-3.067;QD=23.55;ReadPosRankSum=2.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOSTRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317647    GT:AD:DP:GQ:PL    0/1:18,5:23:99:581,0,567
2    169699350    rs518337    G    A    101.66    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOSTRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317647    GT:AD:DP:GQ:PL    0/1:4,5:9:99:132,0,134
2    169707428    rs540652    C    T    1504.25    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.183;DB;DP=96;Dels=0.0;FS=3.862;HRun=0;HaplotypeScore=1.6208;MQ=59.28;MQ0=0;MQRankSum=-0.72;QD=15.67;ReadPosRankSum=-1.474;SNPEFF_AMINO_ACID_CHANGE=T238I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_169707346_169707516;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOSTRIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444448    GT:AD:DP:GQ:PL    0/1:44,51:96:99:1534,0,1314
2    169707552    rs488621    A    G    1307.52    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.957;DB;DP=87;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=1.7876;MQ=59.74;MQ0=0;MQRankSum=-0.913;QD=15.03;ReadPosRankSum=0.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOSTRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317647    GT:AD:DP:GQ:PL    0/1:44,43:87:99:1338,0,1465
2    169717179    rs72091244    T    TA    101.07    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=114.7772;IndelType=I;MQ=53.38;MQ0=0;MQRankSum=1.932;QD=7.22;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOSTRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317647    GT:AD:DP:GQ:PL    0/1:7,5:14:51.95:140,0,52
2    169717541    rs2632372    T    C    226.22    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.813;QD=14.14;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOSTRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495202    GT:AD:DP:GQ:PL    0/1:6,10:16:99:256,0,203
2    169717624    rs2685800    C    T    70.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.1;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOSTRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495202    GT:AD:DP:GQ:PL    0/1:2,3:5:70.60:101,0,71
2    169721377    rs479661    G    A    629.29    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.69;DB;DP=42;Dels=0.0;FS=4.741;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.516;QD=14.98;ReadPosRankSum=-1.725;SNPEFF_AMINO_ACID_CHANGE=G395E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_169721344_169721480;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOSTRIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397206    GT:AD:DP:GQ:PL    0/1:20,22:42:99:659,0,650
2    169727879    rs11420514    G    GA    504.30    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.129;DB;DP=37;FS=0.0;HRun=7;HaplotypeScore=85.6248;IndelType=I;MQ=58.76;MQ0=0;MQRankSum=0.111;QD=13.63;ReadPosRankSum=-0.395;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479309    GT:AD:DP:GQ:PL    0/1:19,18:37:99:543,0,413
2    169728069    rs112677478    GAAA    G    970.09    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.127;DB;DP=96;FS=0.977;HRun=14;HaplotypeScore=528.5657;IndelType=D;MQ=57.16;MQ0=0;MQRankSum=1.718;QD=10.11;ReadPosRankSum=2.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282074    GT:AD:DP:GQ:PL    0/1:53,37:96:99:1009,0,1742
2    169763148    rs560887    T    C    4244.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5981;MQ=59.8;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375363    GT:AD:DP:GQ:PL    1/1:0,118:118:99:4244,319,0
2    169763804    rs3821117    T    C    40.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375363    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:71,6,0
2    169764176    rs492594    G    C    2579.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=V219L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_169764078_169764643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375363    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2612,193,0
2    169764546    rs2232328    C    G    1208.57    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=93;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=1.893;MQ=59.75;MQ0=0;MQRankSum=-0.504;QD=13.0;ReadPosRankSum=-0.892;SNPEFF_AMINO_ACID_CHANGE=S342C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_169764078_169764643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375363    GT:AD:DP:GQ:PL    0/1:55,38:93:99:1239,0,1822
2    169780366    rs579275    T    C    364.90    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.441;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.507;QD=13.03;ReadPosRankSum=1.981;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:13,15:28:99:395,0,420
2    169780961    rs519035    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    169789016    rs497692    T    C    1138.42    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.202;DB;DP=104;Dels=0.0;FS=6.829;HRun=0;HaplotypeScore=0.734;MQ=59.26;MQ0=0;MQRankSum=0.62;QD=10.95;ReadPosRankSum=-0.925;SNPEFF_AMINO_ACID_CHANGE=A1028;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_169788887_169789043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:57,47:104:99:1168,0,1748
2    169791438    rs552976    A    G    95.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:128,12,0
2    169792171    rs3755157    C    T    73.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.21;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:3,3:6:80.85:103,0,81
2    169792188    rs3755158    C    G    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.57;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:64,0,72
2    169801488    rs853789    A    G    650.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:683,51,0
2    169801628    rs860510    A    C    38.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
2    169814347    rs853773    A    G    427.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:460,39,0
2    169814655    rs853772    G    T    1306.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=98;Dels=0.0;FS=2.853;HRun=2;HaplotypeScore=1.5362;MQ=60.0;MQ0=0;MQRankSum=-0.393;QD=13.33;ReadPosRankSum=0.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:49,49:98:99:1337,0,1485
2    169820618    rs4148796    A    G    235.75    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=0.66;QD=4.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:20,37:57:99:266,0,673
2    169820619    rs4148795    T    C    253.88    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=1.079;QD=4.45;ReadPosRankSum=0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:20,37:57:99:284,0,723
2    169826877    rs2193831    C    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:73,0,28
2    169828277    rs2241341    G    A    681.19    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.471;DB;DP=44;Dels=0.0;FS=2.292;HRun=2;HaplotypeScore=0.9983;MQ=58.95;MQ0=0;MQRankSum=-1.132;QD=15.48;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:21,23:44:99:711,0,612
2    169828325    rs2241340    A    G    1309.72    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.592;DB;DP=84;Dels=0.0;FS=3.282;HRun=1;HaplotypeScore=0.9983;MQ=58.05;MQ0=0;MQRankSum=0.033;QD=15.59;ReadPosRankSum=-0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:39,45:84:99:1340,0,1054
2    169830051    rs2389605    C    T    163.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.71;QD=11.65;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:8,6:14:99:193,0,289
2    169830155    rs2287623    G    A    1688.68    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.49;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.76;MQ0=0;MQRankSum=1.233;QD=17.23;ReadPosRankSum=-1.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:45,53:98:99:1719,0,1496
2    169830328    rs2287622    A    G    1680.50    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=100;Dels=0.0;FS=0.881;HRun=1;HaplotypeScore=1.9891;MQ=60.0;MQ0=0;MQRankSum=-0.508;QD=16.8;ReadPosRankSum=0.209;SNPEFF_AMINO_ACID_CHANGE=V444A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_169830225_169830350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:43,57:100:99:1710,0,1303
2    169830515    rs2287621    G    A    81.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    169842809    rs2287618    T    C    1077.23    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.137;DB;DP=96;Dels=0.0;FS=8.922;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.602;QD=11.22;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263817    GT:AD:DP:GQ:PL    0/1:54,42:96:99:1107,0,1503
2    169997051    rs990626    G    A    221.51    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.597;QD=20.14;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=I4371;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_169996965_169997055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:4,7:11:99:252,0,123
2    170003508    rs41268687    G    A    73.10    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=9.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:5,3:8:99:103,0,147
2    170007683    rs17848195    G    A    82.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=6.87;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:8,4:12:99:112,0,287
2    170010985    rs2075252    T    C    665.93    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.33;QD=13.32;ReadPosRankSum=0.124;SNPEFF_AMINO_ACID_CHANGE=K4094E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170010970_170011113;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:23,27:50:99:696,0,750
2    170019207    rs115587365    A    G    150.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.76;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:3,5:8:97.64:180,0,98
2    170025340    rs2239602    C    T    53.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
2    170050472    rs2075248    T    C    484.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:517,39,0
2    170053580    rs2302696    C    T    332.85    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=19;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=1.4942;MQ=60.0;MQ0=0;MQRankSum=-1.056;QD=17.52;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:7,12:19:99:363,0,155
2    170055255    rs16823023    T    C    301.21    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=30;Dels=0.0;FS=1.497;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.795;QD=10.04;ReadPosRankSum=-0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:17,13:30:99:331,0,520
2    170058538    rs115363091    A    G    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
2    170059190    rs2239599    T    C    360.91    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=17.19;ReadPosRankSum=-0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:8,13:21:99:391,0,275
2    170062201    rs71936282    T    TA    81.97    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=22;FS=0.0;HRun=14;HaplotypeScore=149.0784;IndelType=I;MQ=58.38;MQ0=0;MQRankSum=-0.201;QD=3.73;ReadPosRankSum=-0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:13,7:22:68.09:121,0,68
2    170070539    rs2302695    G    C    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
2    170082013    rs2075246    A    G    554.59    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=3.512;DB;DP=47;Dels=0.0;FS=1.453;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.695;QD=11.8;ReadPosRankSum=-1.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:26,21:47:99:585,0,833
2    170082773    rs13383183    C    A    100.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:6,5:11:99:131,0,218
2    170082776    rs35836996    A    T    101.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=9.26;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:6,5:11:99:132,0,211
2    170083248    rs112160178    C    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    170088046    rs4668128    G    A    244.48    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=14.38;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:7,10:17:99:274,0,241
2    170088351    rs2302694    G    A    169.25    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=4.84;ReadPosRankSum=-0.923;SNPEFF_AMINO_ACID_CHANGE=S1700;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170088224_170088352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:27,8:35:99:199,0,860
2    170088477    rs2302693    T    C    36.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.31;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:3,2:5:66.54:67,0,70
2    170089824    rs2239596    T    C    112.13    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.6;QD=8.01;ReadPosRankSum=1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:9,5:14:99:142,0,324
2    170090139    rs78750385    C    G    432.21    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.157;QD=14.9;ReadPosRankSum=-0.938;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:15,14:29:99:462,0,462
2    170092395    rs2229267    A    G    448.21    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.973;DB;DP=32;Dels=0.0;FS=11.748;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.139;QD=14.01;ReadPosRankSum=-0.853;SNPEFF_AMINO_ACID_CHANGE=C1625;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170092350_170092578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:14,18:32:99:478,0,467
2    170096095    rs34915742    C    G    624.94    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.721;DB;DP=55;Dels=0.0;FS=2.277;HRun=0;HaplotypeScore=1.7334;MQ=59.58;MQ0=0;MQRankSum=-0.195;QD=11.36;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=R1412;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170096037_170096285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:31,24:55:99:655,0,947
2    170096291    rs76714416    A    G    445.17    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=37;Dels=0.0;FS=1.463;HRun=0;HaplotypeScore=0.9734;MQ=59.38;MQ0=0;MQRankSum=1.443;QD=12.03;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443831    GT:AD:DP:GQ:PL    0/1:19,18:37:99:475,0,530
2    170097930    rs116483740    T    C    351.54    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.312;DB;DP=35;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.099;QD=10.04;ReadPosRankSum=-0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:19,16:35:99:382,0,532
2    170099400    rs74705514    A    C    404.06    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.076;QD=6.52;ReadPosRankSum=-1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:43,19:62:99:434,0,1486
2    170099446    rs831041    T    G    839.34    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=3.018;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1266;MQ=59.75;MQ0=0;MQRankSum=0.531;QD=8.93;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:61,33:94:99:869,0,1918
2    170099895    rs2075255    A    C    477.53    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.864;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.353;QD=11.11;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:23,20:43:99:508,0,650
2    170099899    rs2075254    G    A    504.31    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=3.293;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=11.46;ReadPosRankSum=1.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:25,19:44:99:534,0,696
2    170100011    rs150552608    G    A    695.24    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.25;DB;DP=59;Dels=0.0;FS=1.033;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.767;QD=11.78;ReadPosRankSum=-0.858;SNPEFF_AMINO_ACID_CHANGE=P1014L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170099913_170100032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443831    GT:AD:DP:GQ:PL    0/1:31,28:59:99:725,0,1064
2    170101156    rs116792402    T    A    746.70    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.611;DB;DP=44;Dels=0.0;FS=1.407;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.142;QD=16.97;ReadPosRankSum=-0.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:19,25:44:99:777,0,600
2    170102994    rs114779248    A    T    59.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=7.41;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:5,3:8:89.27:89,0,186
2    170103336    rs831043    T    C    769.14    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.003;DB;DP=62;Dels=0.0;FS=1.219;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=12.41;ReadPosRankSum=0.353;SNPEFF_AMINO_ACID_CHANGE=T1023;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170103215_170103496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:32,30:62:99:799,0,1052
2    170113396    rs830960    C    T    139.29    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=23.21;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:169,0,22
2    170115382    rs144193618    T    C    51.66    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=4.7;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:7,4:11:81.66:82,0,259
2    170115588    rs2241190    T    C    993.53    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.639;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8653;MQ=59.75;MQ0=0;MQRankSum=-0.658;QD=10.8;ReadPosRankSum=-1.63;SNPEFF_AMINO_ACID_CHANGE=T683;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170115535_170115727;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443831    GT:AD:DP:GQ:PL    0/1:52,40:92:99:1024,0,1770
2    170129528    rs830994    G    A    1936.22    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.961;DB;DP=134;DS;Dels=0.0;FS=0.96;HRun=1;HaplotypeScore=6.2417;MQ=59.45;MQ0=0;MQRankSum=0.532;QD=14.45;ReadPosRankSum=-0.3;SNPEFF_AMINO_ACID_CHANGE=V606;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170129437_170129577;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443831    GT:AD:DP:GQ:PL    0/1:68,66:134:99:1966,0,2411
2    170129636    rs830995    A    G    1159.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,33:33:90.26:1192,90,0
2    170134191    rs831003    G    C    950.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:984,72,0
2    170136180    rs12991585    A    C    117.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.59;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:2,4:6:63.18:148,0,63
2    170137190    rs831005    A    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    170139180    rs831009    G    A    31.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,3:3:6:62,6,0
2    170139346    rs831010    C    T    1882.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1916,141,0
2    170139639    rs831011    A    G    892.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:925,69,0
2    170145273    rs2161039    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    170151354    rs2673173    G    A    311.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:345,27,0
2    170163768    rs2247506    T    C    807.05    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.895;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.16;MQ0=0;MQRankSum=0.649;QD=14.67;ReadPosRankSum=0.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:28,27:55:99:837,0,829
2    170175109    rs861239    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:2,2:4:71.48:72,0,71
2    170175334    rs2229263    T    C    658.78    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.69;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.46;MQ0=0;MQRankSum=1.004;QD=15.32;ReadPosRankSum=1.334;SNPEFF_AMINO_ACID_CHANGE=N83S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170175272_170175394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    0/1:19,24:43:99:689,0,559
2    170218816    rs1559013    T    C    85.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
2    170218847    rs1559014    C    G    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.51;SNPEFF_AMINO_ACID_CHANGE=A21;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170218831_170219195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263816    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
2    170336024    rs1879466    G    C    587.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469980    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:620,45,0
2    170338584    rs11369633    C    CA    220.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=12.084;IndelType=I;MQ=61.78;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295240    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:262,18,0
2    170339003    rs2353187    C    A    375.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295240    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:408,30,0
2    170355944    rs12692909    A    T    487.30    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=35;Dels=0.0;FS=4.715;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.545;QD=13.92;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443151    GT:AD:DP:GQ:PL    0/1:17,18:35:99:517,0,502
2    170360765    rs72885849    G    C    642.33    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.228;DB;DP=52;Dels=0.0;FS=2.929;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=12.35;ReadPosRankSum=-0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295240    GT:AD:DP:GQ:PL    0/1:28,24:52:99:672,0,832
2    170361334    rs111736834    A    G    81.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.55;QD=11.67;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554017    GT:AD:DP:GQ:PL    0/1:3,4:7:94.88:112,0,95
2    170367099    rs28763868    G    A    1325.90    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=82;Dels=0.0;FS=0.926;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=2.276;QD=16.17;ReadPosRankSum=1.235;SNPEFF_AMINO_ACID_CHANGE=A271T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170366212_170367398;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284669    GT:AD:DP:GQ:PL    0/1:39,43:82:99:1356,0,1172
2    170374607    rs13012306    C    T    174.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=17.42;ReadPosRankSum=1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480330    GT:AD:DP:GQ:PL    0/1:4,6:10:99:204,0,131
2    170377737    rs6738934    A    G    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.01;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463400    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,73
2    170393925    rs2683423    G    A    83.17    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=6.4;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    0/1:8,5:13:99:113,0,282
2    170394487    rs2290005    T    A    1331.22    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=5.348;DB;DP=75;Dels=0.0;FS=6.082;HRun=2;HaplotypeScore=1.5983;MQ=60.0;MQ0=0;MQRankSum=-1.123;QD=17.75;ReadPosRankSum=2.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    0/1:34,41:75:99:1361,0,1162
2    170394876    rs1838903    C    T    115.28    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=14.41;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    0/1:3,5:8:81.82:145,0,82
2    170401045    rs2592819    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    170402485    rs2683425    A    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    170402629    rs13013167    C    T    340.53    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.375;QD=13.62;ReadPosRankSum=-0.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    0/1:13,12:25:99:371,0,424
2    170403030    rs2253680    T    C    859.17    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.07;MQ0=0;MQRankSum=0.092;QD=17.18;ReadPosRankSum=1.414;SNPEFF_AMINO_ACID_CHANGE=M467V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170402728_170403214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    0/1:21,29:50:99:889,0,674
2    170403429    rs2683426    T    C    103.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:136,12,0
2    170411693    rs2683455    T    C    612.17    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=11.77;ReadPosRankSum=-1.496;SNPEFF_AMINO_ACID_CHANGE=L385;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170411634_170411765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453153    GT:AD:DP:GQ:PL    0/1:28,24:52:99:642,0,931
2    170413524    rs11289947    CA    C    81.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=11;HaplotypeScore=19.7065;IndelType=D;MQ=62.13;MQ0=0;QD=16.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417376    GT:AD:DP:GQ:PL    1/1:0,5:5:14.98:123,15,0
2    170413601    rs2592824    A    T    282.38    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.63;MQ0=0;MQRankSum=-0.722;QD=16.61;ReadPosRankSum=-0.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417376    GT:AD:DP:GQ:PL    0/1:8,9:17:99:312,0,264
2    170413897    rs78472290    G    GA    146.32    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=24;FS=0.0;HRun=8;HaplotypeScore=49.8341;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.986;QD=6.1;ReadPosRankSum=-0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417376    GT:AD:DP:GQ:PL    0/1:17,7:24:99:185,0,272
2    170419652    rs35894297    C    G    127.86    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=9.84;ReadPosRankSum=-2.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417376    GT:AD:DP:GQ:PL    0/1:8,5:13:99:158,0,296
2    170428127    rs4668146    T    G    510.33    PASS    AB=0.19;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=21;Dels=0.0;FS=10.569;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.313;QD=24.3;ReadPosRankSum=0.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438035    GT:AD:DP:GQ:PL    0/1:4,17:21:99:540,0,109
2    170460823    rs41268691    T    G    55.94    QDFilter2    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.126;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6642;MQ=49.96;MQ0=0;MQRankSum=0.785;QD=1.86;ReadPosRankSum=1.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260970    GT:AD:DP:GQ:PL    0/1:21,8:30:85.93:86,0,447
2    170463551    rs2592813    T    G    950.62    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.812;DB;DP=72;Dels=0.0;FS=5.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.035;QD=13.2;ReadPosRankSum=-0.494;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418888    GT:AD:DP:GQ:PL    0/1:34,38:72:99:981,0,1138
2    170487154    rs4668149    C    G    143.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=17.95;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260970    GT:AD:DP:GQ:PL    0/1:3,5:8:99:174,0,102
2    170488454    rs3754921    A    G    147    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=13.36;ReadPosRankSum=-1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414307    GT:AD:DP:GQ:PL    0/1:6,5:11:99:177,0,216
2    170492567    rs2290007    A    G    586.79    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.432;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.691;QD=11.74;ReadPosRankSum=0.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462903    GT:AD:DP:GQ:PL    0/1:26,24:50:99:617,0,822
2    170492584    rs2290008    T    C    652.79    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=56;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=59.25;MQ0=0;MQRankSum=0.904;QD=11.66;ReadPosRankSum=0.786;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462903    GT:AD:DP:GQ:PL    0/1:30,26:56:99:683,0,930
2    170493103    rs1050354    T    A    753.17    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.519;QD=12.99;ReadPosRankSum=-0.471;SNPEFF_AMINO_ACID_CHANGE=D430E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170492923_170494221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409714    GT:AD:DP:GQ:PL    0/1:31,27:58:99:783,0,943
2    170493863    rs8207    A    G    750.76    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.939;DB;DP=70;Dels=0.0;FS=0.918;HRun=0;HaplotypeScore=2.5714;MQ=59.4;MQ0=0;MQRankSum=0.213;QD=10.73;ReadPosRankSum=-0.261;SNPEFF_AMINO_ACID_CHANGE=N684D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170492923_170494221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409714    GT:AD:DP:GQ:PL    0/1:41,29:70:99:781,0,1273
2    170502919    rs4668150    A    G    84.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447353    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    170505684    rs3213946    G    A    605.71    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.585;DB;DP=59;Dels=0.0;FS=8.321;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=2.032;QD=10.27;ReadPosRankSum=0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530133    GT:AD:DP:GQ:PL    0/1:34,25:59:99:636,0,1147
2    170510374    rs13011829    C    T    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447353    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,72
2    170531572    rs11682248    T    C    909.36    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.196;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.6;MQ0=0;MQRankSum=-0.903;QD=15.95;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419478    GT:AD:DP:GQ:PL    0/1:23,34:57:99:939,0,746
2    170531614    rs11688600    A    G    513.73    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.42;MQ0=0;MQRankSum=-0.659;QD=19.76;ReadPosRankSum=-0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419478    GT:AD:DP:GQ:PL    0/1:10,16:26:99:544,0,336
2    170550727    rs11690884    G    T    412.72    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.701;DB;DP=32;Dels=0.0;FS=4.467;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=12.9;ReadPosRankSum=-0.861;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421028    GT:AD:DP:GQ:PL    0/1:14,18:32:99:443,0,403
2    170550839    rs3820952    A    G    592.28    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=34;Dels=0.0;FS=5.862;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.805;QD=17.42;ReadPosRankSum=0.879;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272797    GT:AD:DP:GQ:PL    0/1:13,21:34:99:622,0,366
2    170550956    rs1446901    A    C    118.36    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.91;ReadPosRankSum=0.198;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421028    GT:AD:DP:GQ:PL    0/1:2,5:7:61.82:148,0,62
2    170557350    rs3829806    A    G    62.19    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.925;QD=5.18;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHOSPHO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476919    GT:AD:DP:GQ:PL    0/1:9,3:12:92.18:92,0,323
2    170558231    rs11685651    T    C    359.45    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.18;DB;DP=27;Dels=0.0;FS=2.366;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.386;QD=13.31;ReadPosRankSum=0.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHOSPHO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359744    GT:AD:DP:GQ:PL    0/1:13,14:27:99:389,0,398
2    170603399    rs6760734    T    C    176.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272797    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
2    170603578    rs6745705    C    A    464.53    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=43;Dels=0.0;FS=1.236;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.007;QD=10.8;ReadPosRankSum=0.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272797    GT:AD:DP:GQ:PL    0/1:28,15:43:99:495,0,885
2    170605981    rs4667607    C    T    1200.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_AMINO_ACID_CHANGE=G472;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170605932_170606314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272797    GT:AD:DP:GQ:PL    1/1:0,34:34:96.30:1233,96,0
2    170606450    rs79825047    C    T    36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=12.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272797    GT:AD:DP:GQ:PL    1/1:0,3:3:8.96:68,9,0
2    170606588    rs10164488    A    G    98.40    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=-0.731;QD=19.68;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272797    GT:AD:DP:GQ:PL    1/1:1,4:5:12.03:131,12,0
2    170606724    rs10164599    A    G    862.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.67;MQ0=0;QD=37.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272797    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:896,69,0
2    170632960    rs66726148    C    CA    650.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=8;HaplotypeScore=162.8095;IndelType=I;MQ=50.2;MQ0=0;QD=28.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437875    GT:AD:DP:GQ:PL    1/1:4,18:23:62.54:693,63,0
2    170633023    rs79777563    T    TA    940.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=4;HaplotypeScore=164.7846;IndelType=I;MQ=49.71;MQ0=0;QD=42.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437875    GT:AD:DP:GQ:PL    1/1:2,20:22:66.22:982,66,0
2    170633067    rs6745191    G    T    501.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=33.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437875    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:534,42,0
2    170633103    rs72542576    GA    G    304.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=74.0205;IndelType=D;MQ=49.96;MQ0=0;QD=30.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLHL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437875    GT:AD:DP:GQ:PL    1/1:2,8:10:27.09:346,27,0
2    170661912    rs3754914    T    C    322.85    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=18.99;ReadPosRankSum=-0.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409837    GT:AD:DP:GQ:PL    0/1:7,10:17:99:353,0,227
2    170663800    rs3135036    C    G    37.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260953    GT:AD:DP:GQ:PL    0/1:1,2:3:16.66:67,0,17
2    170664904    rs72878180    T    G    265.05    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.693;QD=10.19;ReadPosRankSum=0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260953    GT:AD:DP:GQ:PL    0/1:15,10:26:99:295,0,542
2    170665108    rs2556352    G    A    378.38    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.055;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.335;QD=12.61;ReadPosRankSum=1.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260953    GT:AD:DP:GQ:PL    0/1:17,13:30:99:408,0,614
2    170666813    rs3754913    T    C    594.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=34;Dels=0.0;FS=6.054;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.63;QD=17.5;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=I230;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170666793_170666933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260956    GT:AD:DP:GQ:PL    0/1:11,22:34:99:625,0,333
2    170668106    rs2246149    G    A    1049.38    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.533;DB;DP=63;Dels=0.0;FS=3.08;HRun=1;HaplotypeScore=0.9665;MQ=58.97;MQ0=0;MQRankSum=1.065;QD=16.66;ReadPosRankSum=-0.846;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260953    GT:AD:DP:GQ:PL    0/1:31,32:63:99:1079,0,1043
2    170668813    rs3731674    C    T    432.07    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.378;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.102;QD=18.79;ReadPosRankSum=-0.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538491    GT:AD:DP:GQ:PL    0/1:9,14:23:99:462,0,267
2    170676227    rs1541776    T    C    453.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471560    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:487,36,0
2    170677492    rs2162516    A    G    56.35    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=9.39;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471560    GT:AD:DP:GQ:PL    0/1:1,5:6:28.61:86,0,29
2    170677855    rs34089373    G    GT    105.31    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.44;DB;DP=20;FS=0.0;HRun=10;HaplotypeScore=54.0443;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=5.27;ReadPosRankSum=-1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471560    GT:AD:DP:GQ:PL    0/1:14,6:20:99:144,0,185
2    170680879    rs3769767    G    A    207.95    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=18.9;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260953    GT:AD:DP:GQ:PL    0/1:4,7:11:99:238,0,125
2    170762487    rs10171268    C    T    2747.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9772;MQ=59.7;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2780,202,0
2    170782037    rs1461958    C    T    338.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
2    170782338    rs13016918    C    T    111.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.99;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,113
2    170783092    rs138954381    CAAAAACA    C    1587.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=211.4701;IndelType=D;MQ=37.77;MQ0=0;QD=56.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:4,24:28:72.25:1629,72,0
2    170784004    rs6723655    T    C    92.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=9.27;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,220
2    170784049    rs898851    G    A    172.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
2    170785129    rs898849    A    G    168.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
2    170785484    rs10165565    G    A    351.88    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.275;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.66;ReadPosRankSum=2.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:13,11:24:99:382,0,457
2    170821289    rs17556553    G    A    131.94    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.99;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:6,5:11:99:162,0,195
2    170843469    rs2061620    T    C    83.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    170850738    rs1461959    T    C    836.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:869,66,0
2    170857653    rs6747881    G    T    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
2    170865588    rs10205516    G    T    146.39    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.91;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:2,5:7:60.48:176,0,60
2    170871976    rs13028230    A    G    32.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.42;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:4,2:6:62.49:62,0,148
2    170917648    rs10203212    A    G    903.07    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.808;DB;DP=63;Dels=0.0;FS=5.067;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.505;QD=14.33;ReadPosRankSum=-0.406;SNPEFF_AMINO_ACID_CHANGE=L1615;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_170917589_170917696;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:31,32:63:99:933,0,964
2    170917983    rs66965733    CT    C    942.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.051;DB;DP=62;FS=5.584;HRun=12;HaplotypeScore=243.0266;IndelType=D;MQ=57.71;MQ0=0;MQRankSum=0.758;QD=15.2;ReadPosRankSum=1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    1/1:12,48:62:37.90:984,38,0
2    170929880    rs10202446    G    A    387.85    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.613;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=9.94;ReadPosRankSum=-0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:24,15:39:99:418,0,818
2    170930241    rs3217724    G    GA    166.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=33.3466;IndelType=I;MQ=57.05;MQ0=0;MQRankSum=-0.742;QD=20.83;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272793    GT:AD:DP:GQ:PL    0/1:2,6:8:9.55:205,0,10
2    171055942    rs35521414    T    A    136.70    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=19.53;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:2,5:7:61.40:167,0,61
2    171056569    rs6756347    T    A    174.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.112;QD=8.32;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:14,7:21:99:205,0,474
2    171070810    rs67994603    G    T    246.02    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.022;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=16.4;ReadPosRankSum=-0.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,193
2    171070850    rs13423313    G    T    410.82    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.985;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=16.43;ReadPosRankSum=-0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:12,13:25:99:441,0,413
2    171070912    rs13385825    T    C    681.48    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.175;DB;DP=52;Dels=0.0;FS=2.307;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.285;QD=13.11;ReadPosRankSum=0.211;SNPEFF_AMINO_ACID_CHANGE=T114;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171070889_171070993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:24,28:52:99:711,0,798
2    171071369    rs4667626    C    T    378.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:411,30,0
2    171073887    rs2161916    G    A    2388.86    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.841;DB;DP=183;Dels=0.0;FS=6.068;HRun=0;HaplotypeScore=8.0179;MQ=59.24;MQ0=0;MQRankSum=0.51;QD=13.05;ReadPosRankSum=0.823;SNPEFF_AMINO_ACID_CHANGE=P194;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171073829_171073905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:101,80:183:99:2419,0,2966
2    171074008    rs6713360    G    C    362.56    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.99;MQ0=0;MQRankSum=-1.333;QD=15.76;ReadPosRankSum=-1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:10,13:23:99:393,0,346
2    171092363    rs6433185    G    A    338.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
2    171092445    rs1035625    A    G    1239.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,33:33:96.31:1272,96,0
2    171192084    rs12466203    G    A    147.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:180,15,0
2    171225841    rs4668246    A    G    513.90    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.614;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.89;MQ0=0;MQRankSum=0.693;QD=12.24;ReadPosRankSum=0.98;SNPEFF_AMINO_ACID_CHANGE=K308E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171225732_171225887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:23,19:42:99:544,0,715
2    171239560    rs12471568    A    G    1164.16    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.089;DB;DP=70;Dels=0.0;FS=2.262;HRun=0;HaplotypeScore=1.8997;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=16.63;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:26,44:70:99:1194,0,759
2    171240249    rs11675394    C    T    1088.91    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.19;DB;DP=83;Dels=0.0;FS=3.549;HRun=0;HaplotypeScore=0.7887;MQ=59.72;MQ0=0;MQRankSum=-0.763;QD=13.12;ReadPosRankSum=0.175;SNPEFF_AMINO_ACID_CHANGE=R404;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171240220_171240324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:44,38:83:99:1119,0,1168
2    171248778    rs62170829    G    A    119.61    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.009;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.395;QD=6.3;ReadPosRankSum=1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:13,6:19:99:150,0,438
2    171249093    rs2013102    C    T    523.38    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=33;Dels=0.0;FS=10.916;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.741;QD=15.86;ReadPosRankSum=0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:14,19:33:99:553,0,383
2    171256597    rs7561268    A    C    196.89    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9987;MQ=58.84;MQ0=0;MQRankSum=-1.064;QD=9.84;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:11,9:20:99:227,0,333
2    171257945    rs7568041    A    T    325.21    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.341;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=14.78;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:10,12:22:99:355,0,284
2    171260708    rs10930425    C    A    3078.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.36;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,100:101:99:3111,235,0
2    171260787    rs6736609    G    A    3101.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.5;MQ0=0;QD=33.72;SNPEFF_AMINO_ACID_CHANGE=V769I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171260757_171260910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3135,241,0
2    171260797    rs33962844    A    G    860.95    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=84;Dels=0.0;FS=4.77;HRun=2;HaplotypeScore=0.7887;MQ=59.45;MQ0=0;MQRankSum=0.308;QD=10.25;ReadPosRankSum=0.188;SNPEFF_AMINO_ACID_CHANGE=E772G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171260757_171260910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:47,37:84:99:891,0,1495
2    171260820    rs6751520    T    C    2265.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=L780;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171260757_171260910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,67:68:99:2299,178,0
2    171261021    rs6751781    T    G    338.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=28.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:371,30,0
2    171264091    .    T    TGCTCTGGATATGAAA    3361.52    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=199.8947;IndelType=I;MQ=43.17;MQ0=0;QD=152.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:11,10:22:54.19:3362,54,0
2    171264482    rs1561393    G    C    247.62    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.215;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.169;QD=9.9;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:13,12:25:99:278,0,474
2    171264541    rs1370936    C    A    161.21    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:1,5:6:16.29:191,0,16
2    171300575    rs17426211    C    A    1338.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1372,102,0
2    171300648    rs4667639    T    A    688.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:721,54,0
2    171319658    rs13023539    C    T    104.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:137,12,0
2    171323328    rs4359605    T    C    162.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:195,15,0
2    171323416    rs2164963    A    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
2    171355198    rs6761297    A    G    2485.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=38.24;SNPEFF_AMINO_ACID_CHANGE=V1036;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171355102_171355213;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2519,184,0
2    171355329    rs6733198    G    C    187.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:220,18,0
2    171356051    rs66474378    TTATTTA    T    318.91    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=58.541;IndelType=D;MQ=48.54;MQ0=0;MQRankSum=-0.572;QD=35.43;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    0/1:4,5:9:99:358,0,190
2    171356274    rs10185178    G    A    1488.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.79;MQ0=0;QD=28.08;SNPEFF_AMINO_ACID_CHANGE=R1081K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171356156_171356318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1521,126,0
2    171356423    rs9752383    T    C    202.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484338    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:235,18,0
2    171358211    rs7593940    G    A    334.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484338    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
2    171358474    rs7608168    T    A    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484338    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:85,6,0
2    171508490    rs67792340    CA    C    681.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=8;HaplotypeScore=68.5108;IndelType=D;MQ=60.42;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317915    GT:AD:DP:GQ:PL    1/1:1,25:26:75.12:723,75,0
2    171524901    rs1157200    T    C    813.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007277.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428156    GT:AD:DP:GQ:PL    1/1:1,24:25:63.21:847,63,0
2    171539261    rs1035150    C    T    406.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=20.31;ReadPosRankSum=0.887;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007277.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428156    GT:AD:DP:GQ:PL    0/1:8,12:20:99:436,0,259
2    171539416    rs13430227    G    T    407.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.263;DB;DP=32;Dels=0.0;FS=4.041;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=12.74;ReadPosRankSum=-0.471;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007277.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428156    GT:AD:DP:GQ:PL    0/1:16,16:32:99:438,0,535
2    171608172    rs34002163    T    C    158.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007405.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442456    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
2    171632225    rs17694506    C    T    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007405.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
2    171632385    rs10626619    C    CTT    5208.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;FS=0.0;HRun=0;HaplotypeScore=523.776;IndelType=I;MQ=57.0;MQ0=0;QD=59.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007405.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426475    GT:AD:DP:GQ:PL    1/1:7,80:87:99:5208,256,0
2    171632401    rs13028382    C    T    3276.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=32.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007405.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426475    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3276,241,0
2    171634347    rs11334749    TA    T    376.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=24.2694;IndelType=D;MQ=62.13;MQ0=0;QD=37.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC007405.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429172    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:418,30,0
2    171638632    rs66805205    CTATT    C    423.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=41.1014;IndelType=D;MQ=50.65;MQ0=0;QD=52.92;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007405.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409885    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:465,24,0
2    171649402    rs3764916    C    T    1761.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=34.53;SNPEFF_AMINO_ACID_CHANGE=Y82;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171649373_171649430;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007405.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409885    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1794,132,0
2    171649644    rs3764915    G    A    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007405.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409885    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    171654663    rs2287111    A    C    491.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007405.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409885    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:525,39,0
2    171818289    rs2557804    G    A    1730.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GORASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234160    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1764,129,0
2    171822466    rs4668356    C    T    1793.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3375;MQ=59.3;MQ0=0;QD=27.18;SNPEFF_AMINO_ACID_CHANGE=S395;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_171822300_171823639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GORASP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234160    GT:AD:DP:GQ:PL    1/1:0,65:66:99:1827,150,0
2    171863724    rs2557795    C    T    154.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360843    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:187,15,0
2    171902604    rs6751462    A    T    927    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360843    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:960,75,0
2    171912911    rs17283147    A    T    605.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360843    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:639,51,0
2    171913207    rs71399595    CAA    C    164.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=12;HaplotypeScore=29.6479;IndelType=D;MQ=63.93;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360843    GT:AD:DP:GQ:PL    1/1:1,7:8:21.03:206,21,0
2    171916371    rs3731990    C    T    548.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360843    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:581,42,0
2    171916664    rs2676130    A    T    681.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=32.43;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360843    GT:AD:DP:GQ:PL    1/1:1,20:21:57.18:714,57,0
2    171939400    .    AT    A    456.54    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=5.93;DP=58;FS=0.0;HRun=7;HaplotypeScore=133.7347;IndelType=D;MQ=60.19;MQ0=0;MQRankSum=1.283;QD=7.87;ReadPosRankSum=0.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360843    GT:AD:DP:GQ:PL    0/1:37,21:58:99:496,0,906
2    172180771    rs10205459    A    G    2291.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.73;SNPEFF_AMINO_ACID_CHANGE=*379R;SNPEFF_CODON_CHANGE=Tga/Cga;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_2_172180297_172180872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METTL8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000375258    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2324,178,0
2    172195545    rs1733487    G    A    509.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METTL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442541    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:542,42,0
2    172291616    rs6751956    C    T    625.23    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.433;DB;DP=49;Dels=0.0;FS=1.157;HRun=1;HaplotypeScore=0.5784;MQ=59.05;MQ0=0;MQRankSum=0.949;QD=12.76;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=V50;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_172291593_172291696;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375255    GT:AD:DP:GQ:PL    0/1:25,24:49:99:655,0,770
2    172305092    rs17220419    T    C    260.05    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.048;QD=15.3;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375255    GT:AD:DP:GQ:PL    0/1:8,9:17:99:290,0,283
2    172305175    .    C    CT    270.21    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=3.504;DP=49;FS=1.268;HRun=1;HaplotypeScore=277.7353;IndelType=I;MQ=57.02;MQ0=0;MQRankSum=-0.977;QD=5.51;ReadPosRankSum=-0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375255    GT:AD:DP:GQ:PL    0/1:34,15:49:99:309,0,796
2    172309506    rs3731985    T    A    222.05    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=20.19;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480855    GT:AD:DP:GQ:PL    0/1:4,7:11:99:252,0,117
2    172314644    rs113919155    AT    A    457.23    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.639;DB;DP=67;FS=0.0;HRun=11;HaplotypeScore=264.4932;IndelType=D;MQ=59.8;MQ0=0;MQRankSum=-0.13;QD=6.82;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375255    GT:AD:DP:GQ:PL    0/1:17,28:67:99:496,0,183
2    172315211    rs4458186    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375255    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    172329458    rs36112363    G    T    1215.02    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.327;DB;DP=65;Dels=0.0;FS=5.694;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.899;QD=18.69;ReadPosRankSum=-0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375255    GT:AD:DP:GQ:PL    0/1:23,42:65:99:1245,0,707
2    172330393    rs3731983    A    G    157.26    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.384;DB;DP=37;Dels=0.0;FS=1.642;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.35;QD=4.25;ReadPosRankSum=1.088;SNPEFF_AMINO_ACID_CHANGE=Q333;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_172330376_172330485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375255    GT:AD:DP:GQ:PL    0/1:29,8:37:99:187,0,926
2    172333295    rs4668387    C    T    254.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.237;QD=16.98;ReadPosRankSum=0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493106    GT:AD:DP:GQ:PL    0/1:6,9:15:99:285,0,209
2    172336541    rs3731981    C    T    527.30    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.427;DB;DP=59;Dels=0.0;FS=2.428;HRun=1;HaplotypeScore=1.9865;MQ=59.68;MQ0=0;MQRankSum=0.162;QD=8.94;ReadPosRankSum=-0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCAF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375255    GT:AD:DP:GQ:PL    0/1:38,21:59:99:557,0,1170
2    172373731    .    CTTT    C    147.28    PASS    AC=2;AF=1.00;AN=2;DP=13;FS=0.0;HRun=17;HaplotypeScore=101.8717;IndelType=D;MQ=50.97;MQ0=0;QD=9.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC007969.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397084    GT:AD:DP:GQ:PL    1/1:2,11:13:20.47:189,20,0
2    172374000    rs6433295    T    G    189.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.43;MQ0=0;QD=17.23;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYBRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321348    GT:AD:DP:GQ:PL    1/1:0,11:11:21.05:222,21,0
2    172374078    rs6433296    C    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYBRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321348    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:100,9,0
2    172374120    rs6724344    G    A    42.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.24;MQ0=0;QD=21.1;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYBRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321348    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
2    172410874    rs2111719    C    T    293.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYBRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468308    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
2    172549248    rs6433311    A    G    292.52    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.472;DB;DP=34;Dels=0.0;FS=1.937;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=8.6;ReadPosRankSum=0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263811    GT:AD:DP:GQ:PL    0/1:24,10:34:99:323,0,702
2    172549630    rs6757773    T    A    214.28    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=21.43;ReadPosRankSum=-0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471482    GT:AD:DP:GQ:PL    0/1:3,7:10:97.79:244,0,98
2    172563922    rs312925    G    A    1555.22    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=101;Dels=0.0;FS=3.526;HRun=2;HaplotypeScore=1.7998;MQ=59.59;MQ0=0;MQRankSum=-1.076;QD=15.4;ReadPosRankSum=-0.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263811    GT:AD:DP:GQ:PL    0/1:47,53:101:99:1585,0,1534
2    172564021    rs312924    A    T    264.14    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.027;QD=10.57;ReadPosRankSum=-0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263811    GT:AD:DP:GQ:PL    0/1:14,11:25:99:294,0,480
2    172569134    rs5836347    AT    A    91.21    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.088;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=102.9967;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=2.088;QD=4.56;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263811    GT:AD:DP:GQ:PL    0/1:12,8:20:99:130,0,244
2    172569587    rs312918    G    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430778    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    172582111    rs35175731    T    TG    342.63    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.364;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=174.2912;IndelType=I;MQ=51.99;MQ0=0;MQRankSum=1.161;QD=11.42;ReadPosRankSum=0.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263811    GT:AD:DP:GQ:PL    0/1:19,11:30:99:382,0,371
2    172582281    rs148511744    A    ATTAC    1989.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=102.9835;IndelType=I;MQ=47.23;MQ0=0;QD=68.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422646    GT:AD:DP:GQ:PL    1/1:6,23:29:78.27:2032,78,0
2    172582344    rs139881666    AAC    A    466.84    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=1.29;DB;DP=30;FS=7.04;HRun=0;HaplotypeScore=139.873;IndelType=D;MQ=54.65;MQ0=0;MQRankSum=-0.046;QD=15.56;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422646    GT:AD:DP:GQ:PL    0/1:19,11:30:99:506,0,786
2    172586567    rs2292814    G    A    216.74    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.747;QD=27.09;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422646    GT:AD:DP:GQ:PL    0/1:1,7:8:10.28:247,0,10
2    172642057    rs12692973    C    T    238.16    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.472;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=10.35;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392592    GT:AD:DP:GQ:PL    0/1:13,10:23:99:268,0,358
2    172644229    rs2292813    T    C    1720.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392592    GT:AD:DP:GQ:PL    1/1:0,52:53:99:1754,138,0
2    172650382    rs6745143    G    A    228.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=14.29;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392592    GT:AD:DP:GQ:PL    0/1:8,8:16:99:259,0,280
2    172712107    rs3836018    T    TG    182.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=9.3682;IndelType=I;MQ=62.13;MQ0=0;QD=36.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464063    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:224,15,0
2    172712480    rs2056202    T    C    3855.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=59.56;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392592    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3855,286,0
2    172725301    rs1878583    A    G    1622.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=Y33;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_172725191_172725333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422440    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1656,120,0
2    172821739    rs1982288    G    T    342.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264108    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:375,27,0
2    172864695    rs6729945    C    G    94.21    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.226;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=44.98;MQ0=0;MQRankSum=0.581;QD=6.73;ReadPosRankSum=1.097;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_172864490_172864916;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METAP1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315796    GT:AD:DP:GQ:PL    0/1:8,6:14:76.24:124,0,76
2    172944748    rs58045367    G    A    138.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.88;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METAP1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315796    GT:AD:DP:GQ:PL    0/1:4,6:10:99:169,0,134
2    172952532    rs705868    A    C    284.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361609    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:317,27,0
2    172966250    rs2228184    T    C    233.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1593;MQ=57.1;MQ0=0;MQRankSum=-0.673;QD=8.97;ReadPosRankSum=1.493;SNPEFF_AMINO_ACID_CHANGE=Q175;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_172966190_172966374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234198    GT:AD:DP:GQ:PL    0/1:16,10:26:99:263,0,414
2    173333720    rs17676773    G    A    116.38    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.28;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264106    GT:AD:DP:GQ:PL    0/1:1,4:5:22.75:146,0,23
2    173334161    .    T    TATGATTTAGTACC    2103.67    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DP=28;FS=3.565;HRun=0;HaplotypeScore=232.1988;IndelType=I;MQ=51.53;MQ0=0;MQRankSum=-2.436;QD=75.13;ReadPosRankSum=-0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264106    GT:AD:DP:GQ:PL    0/1:18,9:28:99:2143,0,1159
2    173339808    rs11895564    G    A    1198.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=A261T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_173339657_173339850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409532    GT:AD:DP:GQ:PL    1/1:0,34:34:93.29:1232,93,0
2    173340200    rs11464370    C    CA    193.66    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.139;DB;DP=22;FS=0.0;HRun=9;HaplotypeScore=48.9852;IndelType=I;MQ=60.49;MQ0=0;MQRankSum=0.935;QD=8.8;ReadPosRankSum=1.469;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412899    GT:AD:DP:GQ:PL    0/1:13,9:22:99:233,0,272
2    173344474    rs1920979    A    G    3693.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4304;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412899    GT:AD:DP:GQ:PL    1/1:0,105:107:99:3694,283,0
2    173352103    rs2293649    C    T    522.55    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=2.603;DB;DP=52;Dels=0.0;FS=11.221;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.703;QD=10.05;ReadPosRankSum=-1.007;SNPEFF_AMINO_ACID_CHANGE=D575;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_173351992_173352181;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409532    GT:AD:DP:GQ:PL    0/1:33,19:52:99:553,0,953
2    173353060    rs1319059    G    A    214.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264106    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
2    173369000    rs61499296    A    AT    315.33    PASS    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=125.3378;IndelType=I;MQ=58.84;MQ0=0;MQRankSum=-0.239;QD=7.88;ReadPosRankSum=-1.374;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442250    GT:AD:DP:GQ:PL    0/1:34,6:40:99:354,0,818
2    173369000    rs17286988    A    T    68.94    QDFilter2    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=40;Dels=0.0;FS=1.652;HRun=0;HaplotypeScore=9.994;MQ=58.84;MQ0=0;MQRankSum=0.383;QD=1.72;ReadPosRankSum=-0.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442250    GT:AD:DP:GQ:PL    0/1:31,9:40:98.94:99,0,931
2    173427053    rs10176813    T    G    504.99    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.637;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=-0.312;QD=16.83;ReadPosRankSum=1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282077    GT:AD:DP:GQ:PL    0/1:14,16:30:99:535,0,477
2    173460640    rs12693005    T    C    366.99    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.233;DB;DP=31;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=0.9332;MQ=59.25;MQ0=0;MQRankSum=1.206;QD=11.84;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=D263;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_173460557_173460746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544863    GT:AD:DP:GQ:PL    0/1:16,15:31:99:397,0,425
2    173659913    rs7585729    T    C    2448.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9907;MQ=59.18;MQ0=0;QD=30.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2481,208,0
2    173662354    rs6433382    A    G    291.13    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.836;DB;DP=20;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.228;QD=14.56;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    0/1:9,11:20:99:321,0,274
2    173686663    rs2258180    G    T    295.86    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.102;DB;DP=32;Dels=0.0;FS=6.057;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.183;QD=9.25;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    0/1:22,10:32:99:326,0,724
2    173686798    rs2258175    A    G    391.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.649;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=15.07;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    0/1:14,12:26:99:422,0,492
2    173848200    rs72364676    C    CT    156.73    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=44;FS=8.455;HRun=13;HaplotypeScore=222.619;IndelType=I;MQ=56.75;MQ0=0;MQRankSum=-0.117;QD=3.56;ReadPosRankSum=-0.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    0/1:30,10:44:99:196,0,347
2    173861340    rs2290374    G    A    431.18    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.083;DB;DP=32;Dels=0.0;FS=2.127;HRun=4;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.665;QD=13.47;ReadPosRankSum=-0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    0/1:18,14:32:99:461,0,583
2    173861450    rs2290375    A    T    41.53    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=10.38;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:72,0,31
2    173861456    rs5010643    G    C    112.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=28.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
2    173865976    rs71403346    G    GT    523.64    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.703;DB;DP=43;FS=0.0;HRun=7;HaplotypeScore=98.48;IndelType=I;MQ=60.47;MQ0=0;MQRankSum=0.716;QD=12.18;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    0/1:23,19:43:99:563,0,382
2    173866203    rs2028934    C    T    292    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAPGEF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264111    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:325,24,0
2    174047568    .    T    C    262.34    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.473;DP=22;Dels=0.0;FS=2.43;HRun=2;HaplotypeScore=1.891;MQ=58.95;MQ0=0;MQRankSum=0.692;QD=11.92;ReadPosRankSum=0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338983    GT:AD:DP:GQ:PL    0/1:10,12:22:99:292,0,308
2    174055646    rs35853276    T    C    1173.95    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=77;Dels=0.0;FS=0.887;HRun=0;HaplotypeScore=1.8675;MQ=59.7;MQ0=0;MQRankSum=-1.924;QD=15.25;ReadPosRankSum=-1.21;SNPEFF_AMINO_ACID_CHANGE=L147;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_174055623_174055651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338983    GT:AD:DP:GQ:PL    0/1:41,36:77:99:1204,0,1244
2    174062595    rs3754740    A    G    90.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.05;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338983    GT:AD:DP:GQ:PL    0/1:2,4:6:49.92:120,0,50
2    174068513    rs11899707    G    C    1996.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.57;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338983    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2029,147,0
2    174085741    rs11690597    A    G    84.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.03;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338983    GT:AD:DP:GQ:PL    0/1:2,4:6:65.42:114,0,65
2    174086285    rs74417392    C    T    107.07    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=15.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375213    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,105
2    174094345    rs10193498    A    T    234.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.315;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=58.89;MQ0=0;MQRankSum=0.675;QD=11.17;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338983    GT:AD:DP:GQ:PL    0/1:12,9:21:99:264,0,382
2    174094500    rs16861404    G    A    251.30    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.908;DB;DP=24;Dels=0.0;FS=4.465;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=0.381;QD=10.47;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338983    GT:AD:DP:GQ:PL    0/1:14,10:24:99:281,0,440
2    174104211    .    G    A    183.44    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.709;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=5.24;ReadPosRankSum=1.041;SNPEFF_AMINO_ACID_CHANGE=G449E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_174104132_174104224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375213    GT:AD:DP:GQ:PL    0/1:27,8:35:99:213,0,855
2    174123399    rs820008    A    G    131.70    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=1.97;MQ=58.2;MQ0=0;MQRankSum=0.935;QD=10.13;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375213    GT:AD:DP:GQ:PL    0/1:7,6:13:99:162,0,247
2    174128513    rs3769148    C    T    460.57    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=36;Dels=0.0;FS=5.849;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.931;QD=12.79;ReadPosRankSum=-0.802;SNPEFF_AMINO_ACID_CHANGE=S531L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_174128473_174128623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013461.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375213    GT:AD:DP:GQ:PL    0/1:21,15:36:99:491,0,751
2    174223675    rs11675433    C    T    183.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=15.27;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306721    GT:AD:DP:GQ:PL    0/1:6,6:12:99:213,0,182
2    174224355    rs10168943    G    A    417.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306721    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:451,33,0
2    174227876    rs767074    A    G    268.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.899;DB;DP=30;Dels=0.0;FS=6.68;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-2.032;QD=8.95;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306721    GT:AD:DP:GQ:PL    0/1:15,15:30:99:299,0,471
2    174228418    rs4972555    C    T    533.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306721    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:567,42,0
2    174228744    rs1529887    T    C    264.87    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.669;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.134;QD=12.04;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306721    GT:AD:DP:GQ:PL    0/1:13,9:22:99:295,0,439
2    174229348    rs1045401    G    A    77.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306721    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:110,9,0
2    174230153    rs2288993    C    G    1465.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435616    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1498,108,0
2    174230983    rs76436583    G    GT    1643.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=8;HaplotypeScore=162.0853;IndelType=I;MQ=60.9;MQ0=0;QD=28.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435616    GT:AD:DP:GQ:PL    1/1:15,40:58:99:1686,150,0
2    174232622    rs3210728    C    T    170.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410101    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
2    174777699    rs34336652    ATC    A    263.87    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=44.3325;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=-0.811;QD=20.3;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310015    GT:AD:DP:GQ:PL    0/1:6,7:13:99:303,0,327
2    174940280    rs72920507    A    G    178.12    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.849;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.61;QD=9.37;ReadPosRankSum=1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284719    GT:AD:DP:GQ:PL    0/1:11,8:19:99:208,0,301
2    174943685    rs11675247    C    T    329.28    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.824;DB;DP=22;Dels=0.0;FS=1.707;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.824;QD=14.97;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429575    GT:AD:DP:GQ:PL    0/1:10,12:22:99:359,0,336
2    174946760    rs11558990    T    C    710.20    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=12.46;ReadPosRankSum=-0.393;SNPEFF_AMINO_ACID_CHANGE=Y254C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_174946652_174946792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284719    GT:AD:DP:GQ:PL    0/1:31,26:57:99:740,0,880
2    174988189    rs10930639    C    T    183.92    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=16.72;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284719    GT:AD:DP:GQ:PL    0/1:4,7:11:99:214,0,136
2    175093901    rs6752755    C    G    71.32    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=14.26;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284719    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:101,0,30
2    175199895    rs3856434    G    A    458.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394967    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:492,36,0
2    175202199    .    A    G    41.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.3;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=A462;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_175200835_175203220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394967    GT:AD:DP:GQ:PL    0/1:2,3:5:53.31:71,0,53
2    175215287    rs67384376    G    A    372.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CIR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342016    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:406,30,0
2    175234613    .    G    A    180.24    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DP=11;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=1.9775;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=16.39;ReadPosRankSum=2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CIR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342016    GT:AD:DP:GQ:PL    0/1:5,6:11:99:210,0,137
2    175244756    rs2358666    T    C    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CIR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342016    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
2    175262970    rs41270193    C    T    738.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488349    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:772,60,0
2    175263335    rs34027857    C    T    332.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435964    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
2    175264627    rs113297055    CTTTT    C    612.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=18;HaplotypeScore=168.6279;IndelType=D;MQ=51.55;MQ0=0;QD=21.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435964    GT:AD:DP:GQ:PL    1/1:6,21:27:54.73:655,55,0
2    175265614    rs13017310    G    A    161.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424069    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:194,15,0
2    175265666    rs13016842    A    G    370.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424069    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:404,33,0
2    175268763    rs2358672    A    G    594.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424069    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:627,45,0
2    175287778    rs2290158    G    A    1506.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6006;MQ=59.46;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272732    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1540,117,0
2    175289144    rs3739150    C    A    651.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272732    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:685,51,0
2    175292364    rs17256082    T    C    281    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392552    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:314,24,0
2    175292580    rs145699077    TTCAAATTTATCAG    T    2214.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=362.1002;IndelType=D;MQ=39.93;MQ0=0;QD=79.08;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_175292441_175294303;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCRN3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000272732    GT:AD:DP:GQ:PL    1/1:3,25:28:75.25:2256,75,0
2    175300997    rs6757461    G    A    3224.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.51;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=N820;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_175299872_175301144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295500    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3258,241,0
2    175306691    rs35594437    G    A    248.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295500    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
2    175309792    rs34291465    T    C    916.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295500    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:949,72,0
2    175311194    rs1562756    T    A    486.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295500    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:519,42,0
2    175318387    .    C    CA    461.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.326;DP=49;FS=0.0;HRun=8;HaplotypeScore=712.8805;IndelType=I;MQ=35.58;MQ0=0;MQRankSum=-1.117;QD=9.41;ReadPosRankSum=-0.698;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295500    GT:AD:DP:GQ:PL    1/1:32,11:49:76.53:503,77,0
2    175335076    rs2358637    G    T    759.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295500    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:792,57,0
2    175431707    rs2163236    C    G    490.84    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.391;QD=18.18;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409415    GT:AD:DP:GQ:PL    0/1:12,15:27:99:521,0,414
2    175432056    rs2303891    G    A    131.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=14.56;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409415    GT:AD:DP:GQ:PL    0/1:4,5:9:99:161,0,139
2    175432098    rs3815969    G    A    85.30    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=17.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409415    GT:AD:DP:GQ:PL    0/1:1,4:5:26.20:115,0,26
2    175436940    rs4972450    G    A    1673.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_AMINO_ACID_CHANGE=P198L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_175436404_175437174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272746    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1707,126,0
2    175439512    rs1367218    T    C    896.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;QD=38.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436221    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:930,69,0
2    175439536    rs12624277    G    A    745.30    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=5.011;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.53;MQ0=0;MQRankSum=0.281;QD=19.61;ReadPosRankSum=0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436221    GT:AD:DP:GQ:PL    0/1:16,22:38:99:775,0,368
2    175439681    rs71407130    T    TA    438.37    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.492;DB;DP=64;FS=2.861;HRun=13;HaplotypeScore=225.5049;IndelType=I;MQ=58.41;MQ0=0;MQRankSum=-0.009;QD=6.85;ReadPosRankSum=-0.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436221    GT:AD:DP:GQ:PL    0/1:35,25:64:99:477,0,384
2    175440316    rs11675139    G    A    277.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.236;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.53;QD=14.62;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272746    GT:AD:DP:GQ:PL    0/1:9,9:18:99:308,0,298
2    175584977    .    T    C    39.66    MQFilter40;QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.68;MQ0=24;MQRankSum=0.573;QD=1.2;ReadPosRankSum=-0.573;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC018890.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316450    GT:AD:DP:GQ:PL    0/1:25,8:33:69.65:70,0,124
2    175584979    rs13020091    C    G    41.73    MQFilter40;QDFilter2    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.2;MQ0=25;MQRankSum=0.684;QD=1.26;ReadPosRankSum=-0.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC018890.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316450    GT:AD:DP:GQ:PL    0/1:24,9:33:71.72:72,0,100
2    175613115    rs2255918    G    A    216.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409323    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
2    175613169    rs2305414    A    C    126.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409323    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
2    175613600    rs2646159    T    C    509.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409323    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:543,39,0
2    175614908    rs67309103    CAA    C    185.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=22;FS=0.0;HRun=17;HaplotypeScore=155.6979;IndelType=D;MQ=45.77;MQ0=0;MQRankSum=-0.579;QD=8.45;ReadPosRankSum=0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409323    GT:AD:DP:GQ:PL    1/1:8,10:22:25.90:228,26,0
2    175622178    rs11327107    TG    T    292.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=27.2104;IndelType=D;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261007    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:335,27,0
2    175622788    rs2646164    G    A    1101.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.91;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261007    GT:AD:DP:GQ:PL    1/1:0,31:31:84.25:1134,84,0
2    175622907    rs2600687    T    C    411.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261007    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:445,36,0
2    175624107    rs34695580    GA    G    1285.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=9;HaplotypeScore=156.3334;IndelType=D;MQ=61.77;MQ0=0;QD=25.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261007    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1328,147,0
2    175629021    rs7560774    C    A    107.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261007    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:140,12,0
2    175665215    rs2600673    A    G    77.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409089    GT:AD:DP:GQ:PL    0/1:2,3:5:66.24:108,0,66
2    175666656    rs2646153    G    A    521.29    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.506;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=14.09;ReadPosRankSum=0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295497    GT:AD:DP:GQ:PL    0/1:21,16:37:99:551,0,750
2    175677022    rs12613075    C    T    4014.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5362;MQ=59.81;MQ0=0;QD=33.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444573    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4014,292,0
2    175711942    rs14228    C    T    712.52    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=45;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=15.83;ReadPosRankSum=-0.352;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_175711608_175712277;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295497    GT:AD:DP:GQ:PL    0/1:23,22:45:99:743,0,755
2    176043618    rs268223    C    T    128.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472782    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    176044136    rs268224    A    T    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472782    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    176046257    rs268227    C    T    122.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284727    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
2    176190259    rs6729868    T    C    2096.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=49.38;MQ0=0;QD=28.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC096649.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438963    GT:AD:DP:GQ:PL    1/1:0,72:73:99:2130,180,0
2    176857275    rs2885117    T    C    134.56    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.495;QD=19.22;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1715;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466445    GT:AD:DP:GQ:PL    0/1:2,5:7:24.19:165,0,24
2    176947268    rs72919090    G    C    98.75    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=8.98;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308618    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,214
2    176983598    rs143151088    CAAAACCAAAACA    C    433.41    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=167.2286;IndelType=D;MQ=59.46;MQ0=0;MQRankSum=0.423;QD=27.09;ReadPosRankSum=0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HOXD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249501    GT:AD:DP:GQ:PL    0/1:9,7:16:99:472,0,1123
2    176989023    rs711822    C    T    71.10    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.82;DB;DP=24;Dels=0.0;FS=0.0;HRun=11;HaplotypeScore=0.9159;MQ=58.05;MQ0=0;MQRankSum=-0.141;QD=2.96;ReadPosRankSum=-0.916;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009336.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313266    GT:AD:DP:GQ:PL    0/1:15,9:24:99:101,0,451
2    176996023    rs4972804    C    T    1228.84    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.769;DB;DP=121;Dels=0.0;FS=2.061;HRun=0;HaplotypeScore=5.511;MQ=59.66;MQ0=0;MQRankSum=-0.134;QD=10.16;ReadPosRankSum=0.816;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313173    GT:AD:DP:GQ:PL    0/1:70,51:121:99:1259,0,2342
2    177202070    rs818363    T    C    30.18    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.31;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249442    GT:AD:DP:GQ:PL    0/1:5,2:7:60.17:60,0,189
2    177202115    rs818364    A    G    225.48    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=10.25;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249442    GT:AD:DP:GQ:PL    0/1:13,9:22:99:255,0,442
2    177465595    rs17343601    T    C    1036.02    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.406;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=16.44;ReadPosRankSum=0.818;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,32:63:99:1066,0,1024
2    177502117    rs2594945    T    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC017048.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295549    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
2    177502651    rs2969357    G    C    36.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC017048.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295549    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
2    178085137    rs9068    G    A    443.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.052;DB;DP=35;Dels=0.0;FS=3.003;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.472;QD=12.67;ReadPosRankSum=0.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392524    GT:AD:DP:GQ:PL    0/1:21,14:35:99:473,0,669
2    178298861    rs76827775    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264167    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    178301428    rs3754989    C    T    1079.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264167    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1113,81,0
2    178307330    rs4893951    C    T    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460342    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    178326838    rs1979059    C    G    147.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264167    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
2    178326847    rs1979058    G    A    117.69    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.54;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264167    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:148,0,26
2    178358072    rs1348849    C    T    100.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.4;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264167    GT:AD:DP:GQ:PL    0/1:3,4:7:99:131,0,101
2    178362572    rs12468046    G    A    256.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264167    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:289,21,0
2    178378452    rs2364854    T    A    293.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264167    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
2    178402786    rs3213945    G    T    748.42    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.178;DB;DP=58;Dels=0.0;FS=2.379;HRun=5;HaplotypeScore=0.7887;MQ=59.6;MQ0=0;MQRankSum=0.361;QD=12.9;ReadPosRankSum=1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264167    GT:AD:DP:GQ:PL    0/1:33,25:58:99:778,0,1070
2    178417142    rs11694988    C    T    3825.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.43;SNPEFF_AMINO_ACID_CHANGE=R117H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_178414973_178417742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC30B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408939    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3825,286,0
2    178417225    rs11695035    C    T    1467.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;QD=36.69;SNPEFF_AMINO_ACID_CHANGE=L42;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_178414890_178417314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC30B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000500357    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1501,117,0
2    178481818    rs10497497    G    T    5793.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5666;MQ=47.43;MQ0=1;MQRankSum=-1.237;QD=32.55;ReadPosRankSum=1.079;SNPEFF_AMINO_ACID_CHANGE=R538;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_178479026_178483694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC30A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355689    GT:AD:DP:GQ:PL    1/1:1,176:178:99:5793,490,0
2    178482094    rs28630685    C    T    1978.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.93;MQ0=15;QD=26.03;SNPEFF_AMINO_ACID_CHANGE=V446I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_178479026_178483694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC30A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355689    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2011,183,0
2    178482594    rs61742858    G    T    1498.13    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.164;DB;DP=115;Dels=0.0;FS=8.675;HRun=0;HaplotypeScore=1.1567;MQ=54.87;MQ0=0;MQRankSum=1.836;QD=13.03;ReadPosRankSum=-1.4;SNPEFF_AMINO_ACID_CHANGE=P279H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_178479026_178483694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC30A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355689    GT:AD:DP:GQ:PL    0/1:61,54:115:99:1528,0,1822
2    178482596    rs3813257    T    G    1699.94    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=3.744;DB;DP=113;Dels=0.0;FS=7.303;HRun=3;HaplotypeScore=1.1567;MQ=54.78;MQ0=0;MQRankSum=-0.623;QD=15.04;ReadPosRankSum=0.889;SNPEFF_AMINO_ACID_CHANGE=P278;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_178479026_178483694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC30A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355689    GT:AD:DP:GQ:PL    0/1:52,61:113:99:1730,0,1562
2    178494012    rs6734683    C    G    154.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.412;QD=10.32;ReadPosRankSum=0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449286    GT:AD:DP:GQ:PL    0/1:9,6:15:99:185,0,295
2    178494173    rs3830637    G    GGGA    2436.15    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.975;DB;DP=98;FS=2.817;HRun=0;HaplotypeScore=326.0975;IndelType=I;MQ=58.11;MQ0=0;MQRankSum=-0.012;QD=24.86;ReadPosRankSum=-0.158;SNPEFF_AMINO_ACID_CHANGE=S112SP;SNPEFF_CODON_CHANGE=tcc/tcTCCc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_2_178493340_178494290;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450799    GT:AD:DP:GQ:PL    0/1:56,41:98:99:2475,0,2003
2    178528703    rs13025391    C    T    1151.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,37:37:87.27:1184,87,0
2    178528789    rs13025904    G    A    342.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:376,30,0
2    178534110    rs2222711    G    T    511.59    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.285;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=24.36;ReadPosRankSum=0.662;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466790    GT:AD:DP:GQ:PL    0/1:6,15:21:99:542,0,167
2    178534324    rs6433687    A    G    2487.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2520,187,0
2    178534534    rs1358327    G    C    169.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
2    178540293    rs3770016    A    G    683.34    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=35;Dels=0.0;FS=1.391;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.188;QD=19.52;ReadPosRankSum=1.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    0/1:13,22:35:99:713,0,390
2    178545403    rs2886423    T    C    33.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.16;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:63,0,30
2    178545713    rs4538242    C    T    289.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:323,24,0
2    178561865    rs2365623    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    178561947    rs2886424    G    C    195.90    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=24.49;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    0/1:2,6:8:57.88:226,0,58
2    178565815    rs10201180    T    C    343.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.907;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.942;QD=12.26;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    0/1:14,14:28:99:373,0,442
2    178576681    rs13428806    G    A    196.76    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.11;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    0/1:1,6:7:21.58:227,0,22
2    178633945    rs34543540    A    C    193.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=13.83;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    0/1:7,7:14:99:224,0,245
2    178681716    rs1438059    G    C    726.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,24:24:66.16:760,66,0
2    178769992    rs2695096    T    C    502.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:535,42,0
2    178936373    rs1435573    T    G    2151.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_AMINO_ACID_CHANGE=T264;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_178936253_178937482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2185,169,0
2    178936614    rs6433711    C    T    1842.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=R184Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_178936253_178937482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1876,138,0
2    178936993    .    TA    T    283.73    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DP=17;FS=2.246;HRun=1;HaplotypeScore=46.1237;IndelType=D;MQ=61.26;MQ0=0;MQRankSum=0.106;QD=16.69;ReadPosRankSum=-0.635;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_178936253_178937482;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE11A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000286063    GT:AD:DP:GQ:PL    0/1:7,10:17:99:323,0,288
2    178977620    rs2276622    C    G    105.35    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=11;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=9.58;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RBM45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286070    GT:AD:DP:GQ:PL    0/1:7,4:11:99:135,0,170
2    178990941    rs147830313    CAT    C    295.59    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.162;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=87.2903;IndelType=D;MQ=58.99;MQ0=0;MQRankSum=-0.32;QD=12.85;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RBM45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493048    GT:AD:DP:GQ:PL    0/1:14,9:23:99:335,0,611
2    179185051    rs12478760    A    G    552.63    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.377;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.132;QD=13.82;ReadPosRankSum=-0.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:19,21:40:99:583,0,610
2    179185282    rs78476484    G    A    152.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=12.73;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:6,6:12:99:183,0,212
2    179189012    rs1434083    C    T    269.70    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.764;DB;DP=17;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=15.86;ReadPosRankSum=-0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:6,11:17:99:300,0,179
2    179192684    rs76724983    A    C    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    179196233    rs12471790    G    A    502.13    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.229;DB;DP=37;Dels=0.0;FS=5.412;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.027;QD=13.57;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:17,20:37:99:532,0,602
2    179197251    rs12464806    A    G    164.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=10.96;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:9,6:15:99:194,0,264
2    179200947    rs6760059    C    T    1476.68    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.068;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.3627;MQ=59.41;MQ0=0;MQRankSum=1.92;QD=18.93;ReadPosRankSum=0.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477097    GT:AD:DP:GQ:PL    0/1:34,44:78:99:1507,0,939
2    179203797    rs1434087    G    A    1109.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=S269;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179203718_179203821;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315022    GT:AD:DP:GQ:PL    1/1:0,33:33:81.27:1143,81,0
2    179204568    rs9646740    C    T    159.02    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=22.72;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:2,5:7:14.44:189,0,14
2    179208974    rs12464380    G    A    236.63    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.37;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=-0.598;QD=9.1;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:14,11:26:99:267,0,377
2    179213792    rs1812550    T    C    217.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=18.16;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:4,8:12:99:248,0,133
2    179213872    rs964165    C    T    949.17    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.169;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=-1.419;QD=18.25;ReadPosRankSum=0.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:23,29:52:99:979,0,808
2    179238866    rs36060642    A    G    934.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:967,69,0
2    179247468    rs77450626    C    T    257.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=21.47;ReadPosRankSum=-1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:4,8:12:99:288,0,133
2    179250397    rs2276617    A    G    100.44    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.754;QD=14.35;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357080    GT:AD:DP:GQ:PL    0/1:3,4:7:60.68:130,0,61
2    179258923    rs919177    C    T    779.77    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.651;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.261;QD=22.28;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190611    GT:AD:DP:GQ:PL    0/1:12,23:35:99:810,0,394
2    179260226    .    C    T    528.98    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.013;DP=41;Dels=0.0;FS=2.755;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=12.9;ReadPosRankSum=-1.526;SNPEFF_AMINO_ACID_CHANGE=T879;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179260178_179260499;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359685    GT:AD:DP:GQ:PL    0/1:21,20:41:99:559,0,689
2    179260382    rs2304340    A    G    1714.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5731;MQ=51.17;MQ0=0;QD=29.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315022    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1748,153,0
2    179296821    rs3997876    G    A    326.83    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=46;Dels=0.0;FS=5.319;HRun=1;HaplotypeScore=0.9665;MQ=56.7;MQ0=0;MQRankSum=-2.447;QD=7.11;ReadPosRankSum=1.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474793    GT:AD:DP:GQ:PL    0/1:32,14:46:99:357,0,890
2    179296984    .    G    A    68.14    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.096;DP=45;Dels=0.0;FS=8.624;HRun=0;HaplotypeScore=0.0;MQ=55.87;MQ0=0;MQRankSum=-3.563;QD=1.51;ReadPosRankSum=-4.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474793    GT:AD:DP:GQ:PL    0/1:35,10:45:98.13:98,0,1159
2    179300971    rs62176107    G    A    667.89    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=1.576;DB;DP=135;Dels=0.0;FS=1.631;HRun=1;HaplotypeScore=0.6651;MQ=55.16;MQ0=0;MQRankSum=-6.087;QD=4.95;ReadPosRankSum=2.263;SNPEFF_AMINO_ACID_CHANGE=L116;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179300872_179301046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438687    GT:AD:DP:GQ:PL    0/1:102,33:135:99:698,0,3242
2    179300979    rs77419724    A    T    621.91    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=129;Dels=0.0;FS=2.715;HRun=1;HaplotypeScore=0.6651;MQ=55.27;MQ0=0;MQRankSum=-6.185;QD=4.82;ReadPosRankSum=1.802;SNPEFF_AMINO_ACID_CHANGE=I113N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179300872_179301046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKRA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438687    GT:AD:DP:GQ:PL    0/1:98,31:129:99:652,0,3093
2    179315734    rs141354030    GGC    G    235.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;FS=9.031;HRun=0;HaplotypeScore=84.3657;IndelType=D;MQ=37.52;MQ0=0;MQRankSum=0.747;QD=29.45;ReadPosRankSum=0.747;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_179315693_179315958;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKRA;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000325748    GT:AD:DP:GQ:PL    0/1:2,6:8:29:275,0,29
2    179315757    rs75383501    T    G    246.13    MQFilter40    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=9.031;HRun=2;HaplotypeScore=0.9983;MQ=37.47;MQ0=0;MQRankSum=0.751;QD=27.35;ReadPosRankSum=-0.751;SNPEFF_AMINO_ACID_CHANGE=M1L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_START;SNPEFF_EXON_ID=exon_2_179315693_179315958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325748    GT:AD:DP:GQ:PL    0/1:1,8:9:6.37:276,0,6
2    179315781    rs62176113    C    T    384.49    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.22;MQ0=0;MQRankSum=0.869;QD=29.58;ReadPosRankSum=-0.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463882    GT:AD:DP:GQ:PL    1/1:2,11:13:33.10:417,33,0
2    179319391    rs6753709    G    A    103.65    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.73;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375129    GT:AD:DP:GQ:PL    0/1:1,4:5:27.61:134,0,28
2    179323117    rs2288322    C    T    315.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375129    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:348,27,0
2    179325735    rs17304212    C    G    1846.25    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.187;DB;DP=109;Dels=0.0;FS=3.683;HRun=1;HaplotypeScore=0.0;MQ=57.19;MQ0=0;MQRankSum=0.144;QD=16.94;ReadPosRankSum=0.463;SNPEFF_AMINO_ACID_CHANGE=R265G;SNPEFF_CODON_CHANGE=Cgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179325709_179326001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB59;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375129    GT:AD:DP:GQ:PL    0/1:46,63:109:99:1876,0,1382
2    179330468    rs71867054    TA    T    57.98    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=12;FS=3.424;HRun=11;HaplotypeScore=39.0854;IndelType=D;MQ=58.05;MQ0=0;MQRankSum=-0.387;QD=4.83;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375129    GT:AD:DP:GQ:PL    0/1:7,5:12:97.01:97,0,128
2    179337628    .    GT    G    91.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DP=16;FS=0.0;HRun=16;HaplotypeScore=187.0237;IndelType=D;MQ=45.26;MQ0=0;MQRankSum=-1.488;QD=5.74;ReadPosRankSum=-0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350591    GT:AD:DP:GQ:PL    1/1:8,6:16:11.27:133,11,0
2    179341953    rs6704545    G    A    650.47    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=51;Dels=0.0;FS=4.784;HRun=5;HaplotypeScore=1.8218;MQ=59.55;MQ0=0;MQRankSum=-1.391;QD=12.75;ReadPosRankSum=0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350591    GT:AD:DP:GQ:PL    0/1:28,23:51:99:680,0,883
2    179350252    rs115094730    G    A    161.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.201;QD=11.54;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234453    GT:AD:DP:GQ:PL    0/1:7,7:14:99:192,0,237
2    179363807    rs71393429    A    AT    222.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=9;HaplotypeScore=48.8546;IndelType=I;MQ=57.39;MQ0=0;QD=24.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453653    GT:AD:DP:GQ:PL    1/1:1,8:9:24.06:265,24,0
2    179366093    rs2303537    C    T    576.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234453    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:609,45,0
2    179407763    rs58609542    CT    C    93.57    QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=204;FS=2.631;HRun=15;HaplotypeScore=1817.8268;IndelType=D;MQ=49.94;MQ0=0;MQRankSum=3.05;QD=0.46;ReadPosRankSum=2.814;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    0/1:154,33:204:99:133,0,2233
2    179419223    .    G    C    289.49    FSFilter60    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.945;DP=96;Dels=0.0;FS=84.262;HRun=2;HaplotypeScore=8.582;MQ=47.87;MQ0=0;MQRankSum=-3.295;QD=2.98;ReadPosRankSum=-1.508;SNPEFF_AMINO_ACID_CHANGE=G20549;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179419180_179419479;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356127    GT:AD:DP:GQ:PL    0/1:56,40:96:99:319,0,1344
2    179424048    rs55972010    T    C    1656.80    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=1.756;DB;DP=153;Dels=0.0;FS=2.202;HRun=0;HaplotypeScore=8.2146;MQ=59.85;MQ0=0;MQRankSum=1.849;QD=10.83;ReadPosRankSum=-0.629;SNPEFF_AMINO_ACID_CHANGE=V19869;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179424038_179425388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356127    GT:AD:DP:GQ:PL    0/1:89,64:153:99:1687,0,2886
2    179442292    rs148238009    TA    T    1833.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.0;HRun=10;HaplotypeScore=221.2817;IndelType=D;MQ=60.55;MQ0=0;QD=23.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:5,74:79:99:1875,216,0
2    179444768    rs4145333    C    G    5793.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=2.9162;MQ=59.61;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=A13349P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179444666_179444956;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356127    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5793,424,0
2    179482347    rs72677235    CTAAG    C    798.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=98.3012;IndelType=D;MQ=48.77;MQ0=0;QD=46.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:1,16:17:45.15:841,45,0
2    179498042    rs6723526    T    C    5027.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.43;DB;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6519;MQ=59.4;MQ0=0;MQRankSum=-1.709;QD=32.86;ReadPosRankSum=1.569;SNPEFF_AMINO_ACID_CHANGE=K11752E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179497914_179498053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342992    GT:AD:DP:GQ:PL    1/1:1,151:153:99:5028,353,0
2    179518911    rs139167585    TAGC    T    6083.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;FS=0.0;HRun=0;HaplotypeScore=558.6095;IndelType=D;MQ=48.51;MQ0=0;QD=43.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:2,137:123:99:6083,363,0
2    179566146    rs2251987    T    G    887.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,27:27:78.23:921,78,0
2    179578108    rs71393436    T    TACAAA    1018.68    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.218;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=161.0391;IndelType=I;MQ=61.1;MQ0=0;MQRankSum=1.505;QD=26.81;ReadPosRankSum=-1.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    0/1:23,13:38:99:1058,0,502
2    179583317    rs72648978    G    A    3576.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.334;DB;DP=110;Dels=0.0;FS=3.174;HRun=3;HaplotypeScore=0.9999;MQ=59.07;MQ0=0;MQRankSum=1.478;QD=32.52;ReadPosRankSum=-0.238;SNPEFF_AMINO_ACID_CHANGE=T6928;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179583049_179583327;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342992    GT:AD:DP:GQ:PL    1/1:1,109:110:99:3577,255,0
2    179585266    rs2562831    C    T    2949.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=Q6497;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179585112_179585390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342992    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2982,229,0
2    179586604    rs72648970    C    G    3684.48    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.665;DB;DP=238;Dels=0.0;FS=7.118;HRun=0;HaplotypeScore=3.3879;MQ=59.55;MQ0=0;MQRankSum=-0.125;QD=15.48;ReadPosRankSum=-0.325;SNPEFF_AMINO_ACID_CHANGE=D6352H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179586574_179586861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342992    GT:AD:DP:GQ:PL    0/1:114,124:238:99:3684,0,3577
2    179593558    .    T    TA    1824.67    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.729;DP=108;FS=6.471;HRun=3;HaplotypeScore=253.1676;IndelType=I;MQ=59.6;MQ0=0;MQRankSum=2.453;QD=16.9;ReadPosRankSum=0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    0/1:58,50:108:99:1864,0,1526
2    179600563    rs2742348    G    A    4275.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.41;MQ0=0;QD=36.54;SNPEFF_AMINO_ACID_CHANGE=S3626;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179600238_179600801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342992    GT:AD:DP:GQ:PL    1/1:0,117:117:99:4276,316,0
2    179614952    rs10803917    A    G    2353.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.66;MQ0=0;QD=34.61;SNPEFF_AMINO_ACID_CHANGE=L4059;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179610047_179616766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360870    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2387,178,0
2    179615887    rs922984    T    C    2475.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_AMINO_ACID_CHANGE=D3747G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179610047_179616766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360870    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2509,187,0
2    179615931    rs922985    C    G    2301.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=L3732F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179610047_179616766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360870    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2334,172,0
2    179615994    rs922986    T    C    2462.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=T3711;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179610047_179616766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360870    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2495,190,0
2    179616770    rs66641728    GAA    G    1413.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.808;DB;DP=83;FS=0.0;HRun=15;HaplotypeScore=394.4066;IndelType=D;MQ=57.08;MQ0=0;MQRankSum=1.213;QD=16.83;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:20,57:83:99:1456,169,0
2    179618019    rs3754953    T    A    490.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:524,39,0
2    179620951    rs7585334    C    T    3589.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_AMINO_ACID_CHANGE=G3580D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179620949_179621524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3590,265,0
2    179621477    rs6433728    C    T    3838.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=A3405T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179620949_179621524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3838,283,0
2    179623758    rs2291310    C    T    1613.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_AMINO_ACID_CHANGE=S24N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179623711_179623828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446208    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1646,120,0
2    179623939    rs6705594    T    C    1031.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,33:33:87.26:1065,87,0
2    179628680    rs1484119    G    C    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
2    179629363    rs4894043    T    C    3688.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9367;MQ=59.14;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=E3247;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179629254_179629538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3688,274,0
2    179629461    rs2291311    C    T    2601.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=V3215M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179629254_179629538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2635,202,0
2    179632710    rs2291313    T    C    1428.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8625;MQ=59.45;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1461,108,0
2    179633298    rs4471922    G    T    204.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
2    179634376    rs113022889    GTA    G    804.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=184.0177;IndelType=D;MQ=42.03;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:846,69,0
2    179634421    .    T    G    224.12    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.217;DP=65;Dels=0.0;FS=9.048;HRun=3;HaplotypeScore=1.7262;MQ=48.78;MQ0=0;MQRankSum=-1.939;QD=3.45;ReadPosRankSum=4.771;SNPEFF_AMINO_ACID_CHANGE=T2917P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179634406_179634666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    0/1:20,45:65:99:254,0,527
2    179635789    rs4893854    A    T    320.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
2    179635882    rs4894047    C    T    842.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:875,63,0
2    179638238    rs2291306    G    A    1566.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_AMINO_ACID_CHANGE=Y2469;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179638189_179638452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1600,120,0
2    179639297    rs3816781    C    T    167.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
2    179639498    rs4894049    C    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    179642425    rs719201    G    A    1741.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=37.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1775,132,0
2    179643886    rs2291302    A    G    861.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:895,72,0
2    179643934    rs2291301    A    G    1114.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,33:34:87.24:1147,87,0
2    179644035    rs1552280    G    A    1444.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=S1249L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179643956_179644189;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1477,108,0
2    179644304    rs2035496    G    A    286.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
2    179644855    rs10497520    T    C    2987.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=K1155E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179644727_179644932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3020,229,0
2    179645106    rs12693168    A    T    229.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342175    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:263,21,0
2    179664840    rs900772    T    C    88.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412264    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    179698844    rs78585114    G    A    350.61    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.662;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.092;QD=15.24;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    0/1:11,12:23:99:381,0,274
2    179702268    rs1032283    A    G    1102.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=31.51;SNPEFF_AMINO_ACID_CHANGE=P1226;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179701621_179702471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420890    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1136,90,0
2    179702577    rs5836659    A    AGG    797.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=46.028;IndelType=I;MQ=61.43;MQ0=0;QD=53.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    1/1:0,14:15:45.15:840,45,0
2    179702610    rs2078403    C    T    75.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=0.0;QD=12.61;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    0/1:2,4:6:53.58:106,0,54
2    179710550    rs17453403    C    G    288.73    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=1.177;QD=16.04;ReadPosRankSum=-0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    0/1:7,11:18:99:319,0,242
2    179714675    rs4894055    C    T    729.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:762,60,0
2    179721032    rs12464157    C    T    1316.74    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=3.555;DB;DP=87;Dels=0.0;FS=0.794;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.35;QD=15.13;ReadPosRankSum=-0.134;SNPEFF_AMINO_ACID_CHANGE=A364;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179720984_179721124;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    0/1:42,44:87:99:1347,0,1287
2    179721264    rs71226087    C    CCTCT    300.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=24.285;IndelType=I;MQ=64.48;MQ0=0;QD=42.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:342,18,0
2    179730852    rs79220514    A    G    111.11    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.22;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:141,0,26
2    179732980    rs10165177    A    G    1128.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1161,87,0
2    179733011    rs76209803    A    T    151.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=10.1;ReadPosRankSum=0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    0/1:9,6:15:99:181,0,285
2    179735946    rs1565287    A    G    130.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
2    179736006    rs6731864    T    G    169.69    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=9.98;ReadPosRankSum=-0.433;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    0/1:9,8:17:99:200,0,328
2    179737144    rs12693170    C    A    335.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
2    179742996    rs13400020    A    G    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295723    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    179751817    rs4894060    T    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    179753245    rs7573293    C    T    2662.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2696,196,0
2    179753549    rs1873164    G    A    198.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:232,18,0
2    179783696    rs12467323    C    A    168.38    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=5.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=16.84;ReadPosRankSum=1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    0/1:3,7:10:86.01:198,0,86
2    179825838    rs78770428    TG    T    179.62    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=42.534;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.362;QD=9.98;ReadPosRankSum=0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    0/1:11,7:18:99:219,0,428
2    179826241    rs6725028    A    G    600.51    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=20.02;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    0/1:9,21:30:99:631,0,214
2    179839728    rs143596162    A    G    363.54    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.442;DB;DP=23;Dels=0.0;FS=4.669;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.217;QD=15.81;ReadPosRankSum=1.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    0/1:10,13:23:99:394,0,310
2    179914640    rs61397643    G    A    687.29    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.144;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.484;QD=15.98;ReadPosRankSum=1.268;SNPEFF_AMINO_ACID_CHANGE=A10V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_179914567_179914786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409284    GT:AD:DP:GQ:PL    0/1:20,23:43:99:717,0,560
2    179977723    rs17454087    C    G    370.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428443    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:404,30,0
2    179980070    rs2044479    G    A    195.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428443    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:229,18,0
2    179982125    rs71815273    AAGAT    A    326.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=35.9789;IndelType=D;MQ=56.42;MQ0=0;QD=46.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426988    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:369,21,0
2    179988395    rs5836671    T    TA    735.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.064;DB;DP=43;FS=3.443;HRun=13;HaplotypeScore=180.0003;IndelType=I;MQ=57.73;MQ0=0;MQRankSum=0.85;QD=17.1;ReadPosRankSum=0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428443    GT:AD:DP:GQ:PL    1/1:11,31:43:53.37:777,53,0
2    179989039    rs2289992    G    A    695.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428443    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:728,54,0
2    179997177    rs3214766    AT    A    2234.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.0;HRun=6;HaplotypeScore=241.0889;IndelType=D;MQ=61.39;MQ0=0;QD=28.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428443    GT:AD:DP:GQ:PL    1/1:8,71:79:99:2276,214,0
2    180047746    rs1446673    G    C    760.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428443    GT:AD:DP:GQ:PL    1/1:0,20:21:60.19:794,60,0
2    180047908    rs6757681    T    C    912.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=K21;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_180047807_180047915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428443    GT:AD:DP:GQ:PL    1/1:0,27:27:78.23:946,78,0
2    180048071    rs12693176    T    C    76.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428443    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
2    180307879    rs67439986    TG    T    215.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=12;FS=0.0;HRun=6;HaplotypeScore=31.7468;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.925;QD=17.93;ReadPosRankSum=-0.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF385B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457304    GT:AD:DP:GQ:PL    0/1:3,9:12:82.36:254,0,82
2    180310604    rs12623873    C    T    58.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=11.64;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF385B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475539    GT:AD:DP:GQ:PL    0/1:2,3:5:58.08:88,0,58
2    180311207    rs2271760    G    A    315.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=21;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.675;QD=15.05;ReadPosRankSum=0.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF385B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475539    GT:AD:DP:GQ:PL    0/1:9,12:21:99:346,0,276
2    180383498    rs4567894    C    A    171.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.097;QD=12.27;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF385B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336917    GT:AD:DP:GQ:PL    0/1:8,6:14:99:202,0,276
2    180409496    rs80000888    C    A    711.04    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.603;DB;DP=61;Dels=0.0;FS=3.504;HRun=3;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.813;QD=11.66;ReadPosRankSum=-0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF385B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463918    GT:AD:DP:GQ:PL    0/1:34,27:61:99:741,0,1119
2    180810180    rs59139193    C    T    8117.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.496;DB;DP=238;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.3842;MQ=59.9;MQ0=0;MQRankSum=-1.113;QD=34.11;ReadPosRankSum=-0.744;SNPEFF_AMINO_ACID_CHANGE=A801;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_180809856_180810442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:1,236:238:99:8118,568,0
2    180810264    rs6433818    A    T    8984.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9376;MQ=59.91;MQ0=0;QD=35.94;SNPEFF_AMINO_ACID_CHANGE=S773R;SNPEFF_CODON_CHANGE=agT/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_180809856_180810442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8985,656,0
2    180815528    rs2304858    A    T    3546.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;DB;DP=98;Dels=0.0;FS=2.682;HRun=1;HaplotypeScore=2.9155;MQ=60.0;MQ0=0;MQRankSum=0.774;QD=36.19;ReadPosRankSum=0.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:2,96:98:99:3546,223,0
2    180823590    rs10497553    C    T    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
2    180830958    rs6733426    A    G    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
2    180835589    rs4894140    A    G    3471.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3472,280,0
2    180835792    rs3768837    T    A    1699.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_AMINO_ACID_CHANGE=V272;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_180835668_180835803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1733,132,0
2    180835992    rs3768839    G    A    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    180837806    rs6433821    T    A    247.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=24.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:281,21,0
2    180843126    rs2367990    C    T    574.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:607,45,0
2    180846743    rs3738943    G    T    682.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295749    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:715,57,0
2    181927362    rs193281538    A    G    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2E3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411535    GT:AD:DP:GQ:PL    0/1:3,3:6:90.81:103,0,91
2    182340214    rs2305591    A    T    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484404    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
2    182344846    rs113209523    G    GT    1396.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=10;HaplotypeScore=122.9736;IndelType=I;MQ=58.64;MQ0=0;QD=29.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339307    GT:AD:DP:GQ:PL    1/1:3,45:48:99:1438,135,0
2    182346954    rs155098    C    T    131.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478440    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:164,12,0
2    182350447    rs155102    A    G    90.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233573    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
2    182350743    rs155103    A    G    1352.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.39;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233573    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1386,105,0
2    182359613    rs165419    G    A    903.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233573    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:936,69,0
2    182363613    rs1349196    T    A    322.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473002    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
2    182374179    rs2368211    T    C    116.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233573    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
2    182374534    rs1143674    A    G    1775.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=T615;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182374385_182374534;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397033    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1809,138,0
2    182376546    rs1466109    T    G    1850.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233573    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1883,147,0
2    182387133    rs7602504    A    G    1129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397033    GT:AD:DP:GQ:PL    1/1:0,34:35:87.27:1163,87,0
2    182394145    rs3770104    C    T    134.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476824    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
2    182395345    rs1143676    G    A    2747.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_AMINO_ACID_CHANGE=R878Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182395251_182395376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397033    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2781,202,0
2    182399097    rs7562325    T    C    672.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=H961;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182398999_182399097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397033    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:706,60,0
2    182399497    rs11418738    A    ATTT    762.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=105.77;IndelType=I;MQ=50.41;MQ0=0;QD=36.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:2,9:21:57.02:805,57,0
2    182399523    .    A    T    60.63    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.167;DP=30;Dels=0.0;FS=2.754;HRun=5;HaplotypeScore=5.8827;MQ=53.47;MQ0=0;MQRankSum=-1.326;QD=2.02;ReadPosRankSum=-0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    0/1:23,7:30:90.62:91,0,511
2    182399638    rs2124443    A    G    2771.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.81;MQ0=0;QD=36.96;SNPEFF_AMINO_ACID_CHANGE=L993;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182399543_182399662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397033    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2805,208,0
2    182399986    rs4666787    A    G    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:66,6,0
2    182402790    rs6747500    G    A    341.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:374,27,0
2    182403792    rs57234957    A    AT    1877.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=217.5735;IndelType=I;MQ=59.13;MQ0=0;QD=44.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397033    GT:AD:DP:GQ:PL    1/1:4,38:42:99:1920,120,0
2    182403851    rs10180793    G    A    2278.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9832;MQ=59.03;MQ0=0;QD=31.21;SNPEFF_AMINO_ACID_CHANGE=D389;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182403819_182403991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374969    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2311,175,0
2    182412633    .    G    GACACACACACACAC    11564.86    PASS    AC=2;AF=1.00;AN=2;DP=86;FS=0.0;HRun=0;HaplotypeScore=858.3916;IndelType=I;MQ=40.06;MQ0=0;QD=134.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:45,17:86:99:11565,205,0
2    182412723    rs78496639    C    CGT    239.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=13.8212;IndelType=I;MQ=60.0;MQ0=0;QD=39.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:281,15,0
2    182413259    rs12997453    A    G    626.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:659,51,0
2    182413602    rs13003064    A    T    966.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:999,78,0
2    182430120    rs7604902    C    A    1027.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460319    GT:AD:DP:GQ:PL    1/1:0,29:29:84.22:1060,84,0
2    182438716    rs10427195    A    G    795.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:828,63,0
2    182521578    rs1473295    G    A    476.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_AMINO_ACID_CHANGE=F52;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182521496_182521733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERKL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339098    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:510,39,0
2    182543455    rs1801262    T    C    987.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_AMINO_ACID_CHANGE=T45A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182541194_182543598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEUROD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295108    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1021,78,0
2    182767178    rs34087767    C    G    408.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=35;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=11.68;ReadPosRankSum=0.253;SNPEFF_AMINO_ACID_CHANGE=S313;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182766493_182767193;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSFA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428267    GT:AD:DP:GQ:PL    0/1:21,14:35:99:439,0,628
2    182792965    rs34728960    G    A    707.62    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=3.288;DB;DP=72;Dels=0.0;FS=9.55;HRun=0;HaplotypeScore=1.5592;MQ=59.42;MQ0=0;MQRankSum=0.428;QD=9.83;ReadPosRankSum=1.917;SNPEFF_AMINO_ACID_CHANGE=A1076;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182792888_182793005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSFA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428267    GT:AD:DP:GQ:PL    0/1:46,26:72:99:738,0,1297
2    182794534    rs1051085    G    A    112.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428267    GT:AD:DP:GQ:PL    0/1:4,5:9:99:142,0,138
2    182926144    rs3754930    T    C    253.05    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=14.89;ReadPosRankSum=-0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPP1R1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280295    GT:AD:DP:GQ:PL    0/1:9,8:17:99:283,0,281
2    182928555    rs1196161    G    C    2756.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6649;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPP1R1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280295    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2789,211,0
2    182981846    rs1882211    G    C    443.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=36.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPP1R1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280295    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:477,36,0
2    182981968    rs1882212    A    G    492.37    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8962;MQ=58.87;MQ0=0;MQRankSum=-0.582;QD=12.01;ReadPosRankSum=-0.203;SNPEFF_AMINO_ACID_CHANGE=A92;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_182981934_182982028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPP1R1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409137    GT:AD:DP:GQ:PL    0/1:20,21:41:99:522,0,609
2    183033020    rs78156757    GA    G    306.58    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=3.044;DB;DP=50;FS=0.0;HRun=12;HaplotypeScore=205.4081;IndelType=D;MQ=58.69;MQ0=0;MQRankSum=-0.629;QD=6.13;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    0/1:28,20:50:99:346,0,498
2    183050386    rs1864855    G    C    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456212    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
2    183050963    rs1368216    C    G    111.20    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.24;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:141,0,26
2    183051421    rs7597711    A    G    568.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:602,45,0
2    183051449    rs10930991    T    C    90.77    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=8.25;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    0/1:7,4:11:99:121,0,192
2    183070619    rs1344773    A    T    420.42    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.057;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=12.74;ReadPosRankSum=0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    0/1:17,16:33:99:450,0,536
2    183070911    rs55747252    G    A    170.02    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.635;QD=14.17;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    0/1:5,7:12:99:200,0,164
2    183088584    rs3754929    G    A    250.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=15;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=16.7;ReadPosRankSum=-0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482538    GT:AD:DP:GQ:PL    0/1:6,9:15:99:280,0,212
2    183106427    rs2623435    C    G    177.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.936;QD=12.67;ReadPosRankSum=0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    0/1:7,7:14:99:207,0,241
2    183106758    rs2568667    T    G    161.96    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.54;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=9.0;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    0/1:11,7:18:99:192,0,403
2    183129242    rs10930999    A    G    193.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=19.32;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331935    GT:AD:DP:GQ:PL    0/1:4,6:10:99:223,0,137
2    183583130    rs2118591    A    G    335.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:369,27,0
2    183584755    rs6729801    G    A    1622.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=D76N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_183584734_183584896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1656,123,0
2    183593451    rs3832045    AT    A    962.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=43;FS=5.798;HRun=9;HaplotypeScore=130.3213;IndelType=D;MQ=60.29;MQ0=0;MQRankSum=1.641;QD=22.38;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469118    GT:AD:DP:GQ:PL    1/1:6,37:43:99:1004,103,0
2    183593697    rs288280    C    T    1302.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=S203;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_183593590_183593721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1336,99,0
2    183594362    rs67313165    G    GA    173.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=22.3802;IndelType=I;MQ=55.21;MQ0=0;QD=34.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469118    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:215,15,0
2    183597063    rs288282    T    G    168.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469118    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
2    183597318    rs825660    A    G    1684.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469118    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1718,126,0
2    183597462    rs17356762    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469118    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
2    183616150    rs386134    T    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    183616543    rs192892884    A    G    2038.89    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.516;QD=14.26;ReadPosRankSum=-0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    0/1:72,71:143:99:2069,0,2245
2    183616592    rs3098359    C    T    3310.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8255;MQ=59.75;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3310,250,0
2    183616748    rs3115425    G    C    1483.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.601;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=59.53;MQ0=0;MQRankSum=-1.45;QD=30.28;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    1/1:1,48:49:91.58:1517,92,0
2    183622319    rs141152570    AATAAT    A    1026.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=110.1048;IndelType=D;MQ=51.35;MQ0=0;QD=57.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:1069,54,0
2    183622547    rs288334    T    G    995.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.8;MQ0=0;QD=31.1;SNPEFF_AMINO_ACID_CHANGE=H600Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_183622419_183622552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392392    GT:AD:DP:GQ:PL    1/1:0,32:32:78.25:1028,78,0
2    183627504    rs192618    A    G    1984.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=K701;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_183627409_183627528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392392    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2017,150,0
2    183627619    rs190830    C    G    1064.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264065    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1098,78,0
2    183653727    rs288304    C    A    544.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392392    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:577,45,0
2    183723722    rs6433992    A    G    490.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRZB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295113    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:523,39,0
2    183793383    rs9333279    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471640    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    183793398    rs9333280    A    G    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471640    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    183799558    rs9288088    G    C    516.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.274;DB;DP=19;Dels=0.0;FS=5.006;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.004;QD=27.18;ReadPosRankSum=1.552;SNPEFF_AMINO_ACID_CHANGE=V927;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_183799480_183799560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361354    GT:AD:DP:GQ:PL    1/1:1,18:19:26.04:549,26,0
2    183827018    rs2271671    G    A    551.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360982    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:585,45,0
2    183832100    .    C    CA    209.85    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.441;DP=40;FS=1.72;HRun=12;HaplotypeScore=186.79;IndelType=I;MQ=58.67;MQ0=0;MQRankSum=-0.534;QD=5.25;ReadPosRankSum=0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360982    GT:AD:DP:GQ:PL    0/1:27,11:40:99:249,0,249
2    183851058    rs10185562    C    T    235.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360982    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:268,21,0
2    183859473    rs16823914    T    C    694.34    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.057;DB;DP=58;Dels=0.0;FS=1.934;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.171;QD=11.97;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360982    GT:AD:DP:GQ:PL    0/1:35,23:58:99:724,0,1203
2    183960522    rs13399265    T    C    117.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469344    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
2    183988984    rs2705719    C    G    162.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472844    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
2    183998366    rs34264626    CT    C    110.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.567;DB;DP=20;FS=0.0;HRun=17;HaplotypeScore=152.0112;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=0.063;QD=5.51;ReadPosRankSum=0.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442895    GT:AD:DP:GQ:PL    0/1:8,10:20:26.13:149,0,26
2    184022015    rs3791249    G    C    306.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295119    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:340,24,0
2    184023295    rs13410455    G    A    88.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295119    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    185463535    rs73041379    G    A    31.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=7.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_185463093_185463797;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    0/1:2,2:4:54.65:61,0,55
2    185463815    .    C    CCT    1231.06    PASS    AC=2;AF=1.00;AN=2;DP=33;FS=0.0;HRun=0;HaplotypeScore=99.3442;IndelType=I;MQ=59.12;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    1/1:7,26:33:78.27:1273,78,0
2    185798504    rs4667000    A    C    148.28    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.181;QD=8.24;ReadPosRankSum=1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    0/1:11,7:18:99:178,0,359
2    185800905    rs12476147    A    T    945.28    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=77;Dels=0.0;FS=0.882;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-1.081;QD=12.28;ReadPosRankSum=-0.851;SNPEFF_AMINO_ACID_CHANGE=Q261L;SNPEFF_CODON_CHANGE=cAa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_185800510_185804219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    0/1:43,34:77:99:975,0,1336
2    185801747    rs4667001    G    A    844.36    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.873;DB;DP=59;Dels=0.0;FS=3.586;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.827;QD=14.31;ReadPosRankSum=-0.569;SNPEFF_AMINO_ACID_CHANGE=E542K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_185800510_185804219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    0/1:29,30:59:99:874,0,977
2    185801755    rs4667002    A    G    780.11    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.279;DB;DP=56;Dels=0.0;FS=3.786;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.23;QD=13.93;ReadPosRankSum=0.098;SNPEFF_AMINO_ACID_CHANGE=T544;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_185800510_185804219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    0/1:27,29:56:99:810,0,940
2    185802211    rs5836928    C    CACA    843.66    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=0.858;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=238.7016;IndelType=I;MQ=58.29;MQ0=0;MQRankSum=-0.293;QD=15.07;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=-697T;SNPEFF_CODON_CHANGE=-/ACA;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_2_185800510_185804219;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    0/1:39,16:56:99:883,0,1535
2    185802243    rs1366842    C    A    431.32    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=50;Dels=0.0;FS=8.805;HRun=2;HaplotypeScore=0.0;MQ=58.35;MQ0=0;MQRankSum=0.914;QD=8.63;ReadPosRankSum=-1.04;SNPEFF_AMINO_ACID_CHANGE=T707K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_185800510_185804219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    0/1:33,17:50:99:461,0,1059
2    185802363    rs12477430    A    G    885.82    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.993;DB;DP=63;Dels=0.0;FS=7.09;HRun=0;HaplotypeScore=0.0;MQ=59.04;MQ0=0;MQRankSum=-0.062;QD=14.06;ReadPosRankSum=1.92;SNPEFF_AMINO_ACID_CHANGE=H747R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_185800510_185804219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302277    GT:AD:DP:GQ:PL    0/1:30,33:63:99:916,0,927
2    186412592    rs4233785    G    A    119.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.86;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC080125.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414888    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
2    186610344    rs11884004    T    G    393.40    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.894;DB;DP=37;Dels=0.0;FS=8.889;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.493;QD=10.63;ReadPosRankSum=0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465275    GT:AD:DP:GQ:PL    0/1:21,16:37:99:423,0,625
2    186610388    rs17813736    G    A    206    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=11.44;ReadPosRankSum=-1.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465275    GT:AD:DP:GQ:PL    0/1:10,8:18:99:236,0,351
2    186611566    rs6758484    C    A    2030.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9748;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465275    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2064,157,0
2    186611938    rs12618129    G    A    500.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.028;DB;DP=25;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.581;QD=20.03;ReadPosRankSum=0.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465275    GT:AD:DP:GQ:PL    0/1:10,15:25:99:531,0,330
2    186625645    rs71411142    TTTGA    T    865.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.326;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=198.1899;IndelType=D;MQ=56.38;MQ0=0;MQRankSum=-0.022;QD=28.86;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:12,18:30:99:905,0,805
2    186625670    rs143288982    TAA    T    253.45    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.096;DB;DP=36;FS=0.0;HRun=14;HaplotypeScore=259.1647;IndelType=D;MQ=56.68;MQ0=0;MQRankSum=0.361;QD=7.04;ReadPosRankSum=0.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:21,13:36:99:292,0,596
2    186625770    rs7562137    A    G    795.57    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=70;Dels=0.0;FS=0.889;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=0.076;QD=11.37;ReadPosRankSum=-1.322;SNPEFF_AMINO_ACID_CHANGE=K378;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186625715_186625830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:36,34:70:99:826,0,1030
2    186627943    rs17228441    T    C    1821.45    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=128;Dels=0.0;FS=5.395;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=2.158;QD=14.23;ReadPosRankSum=0.379;SNPEFF_AMINO_ACID_CHANGE=I425T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186627910_186628016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:64,63:128:99:1851,0,1923
2    186628203    rs17228483    G    A    218.62    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=16.82;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:6,7:13:99:249,0,205
2    186629191    rs12998112    T    G    642.24    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=1.361;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.747;QD=16.47;ReadPosRankSum=0.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:14,25:39:99:672,0,399
2    186629349    rs1986166    G    A    300.33    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.31;MQ0=0;MQRankSum=0.814;QD=10.73;ReadPosRankSum=0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:17,11:28:99:330,0,577
2    186654592    rs992822    A    G    430.46    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.512;DB;DP=37;Dels=0.0;FS=8.415;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.557;QD=11.63;ReadPosRankSum=-1.13;SNPEFF_AMINO_ACID_CHANGE=N910S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:20,17:37:99:460,0,707
2    186655726    rs10931199    G    A    2917.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6174;MQ=59.43;MQ0=0;MQRankSum=1.386;QD=36.02;ReadPosRankSum=-0.563;SNPEFF_AMINO_ACID_CHANGE=R1288Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    1/1:1,80:81:99:2950,220,0
2    186656657    rs10173807    C    T    1511.89    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.689;DB;DP=101;Dels=0.0;FS=7.926;HRun=0;HaplotypeScore=0.6651;MQ=59.77;MQ0=0;MQRankSum=-0.062;QD=14.97;ReadPosRankSum=-0.359;SNPEFF_AMINO_ACID_CHANGE=N1598;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:49,52:101:99:1542,0,1476
2    186656840    rs17815052    T    C    2134.83    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.448;DB;DP=147;Dels=0.0;FS=10.204;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=-0.733;QD=14.52;ReadPosRankSum=0.745;SNPEFF_AMINO_ACID_CHANGE=N1659;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:68,78:147:99:2165,0,2120
2    186656956    rs17229201    T    C    1214.60    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.122;DB;DP=109;Dels=0.0;FS=5.257;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.544;QD=11.14;ReadPosRankSum=-0.687;SNPEFF_AMINO_ACID_CHANGE=M1698T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:62,46:109:99:1245,0,2164
2    186657089    rs17229222    C    A    1021.53    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.713;DB;DP=76;Dels=0.0;FS=1.891;HRun=0;HaplotypeScore=0.9916;MQ=59.75;MQ0=0;MQRankSum=-0.09;QD=13.44;ReadPosRankSum=0.112;SNPEFF_AMINO_ACID_CHANGE=S1742;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:40,35:76:99:1052,0,1301
2    186658056    rs60029104    G    A    1558.54    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.717;DB;DP=91;Dels=0.0;FS=3.964;HRun=1;HaplotypeScore=1.6609;MQ=60.0;MQ0=0;MQRankSum=0.946;QD=17.13;ReadPosRankSum=-0.808;SNPEFF_AMINO_ACID_CHANGE=D2065N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:40,50:91:99:1589,0,1197
2    186658438    rs10490391    C    T    1702.18    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.777;DB;DP=122;Dels=0.0;FS=7.063;HRun=0;HaplotypeScore=1.8055;MQ=59.62;MQ0=0;MQRankSum=0.133;QD=13.95;ReadPosRankSum=0.003;SNPEFF_AMINO_ACID_CHANGE=T2192M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:65,57:122:99:1732,0,1966
2    186658565    rs10490392    G    T    1155.61    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.126;DB;DP=85;Dels=0.0;FS=4.183;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.116;QD=13.6;ReadPosRankSum=-0.049;SNPEFF_AMINO_ACID_CHANGE=E2234D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:46,39:85:99:1186,0,1470
2    186659359    rs2161036    G    T    1029.57    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=75;Dels=0.0;FS=0.893;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.251;QD=13.73;ReadPosRankSum=-0.623;SNPEFF_AMINO_ACID_CHANGE=R2499M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:41,34:75:99:1060,0,1395
2    186661673    rs55938253    A    G    1061.07    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.147;DB;DP=82;Dels=0.0;FS=5.938;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=1.73;QD=12.94;ReadPosRankSum=-2.091;SNPEFF_AMINO_ACID_CHANGE=L3270;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186653370_186662257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:44,38:82:99:1091,0,1466
2    186664368    .    G    T    167.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.794;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=11.18;ReadPosRankSum=-2.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326147    GT:AD:DP:GQ:PL    0/1:8,7:15:99:198,0,254
2    186664473    rs11686997    T    C    698.31    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.064;DB;DP=53;Dels=0.0;FS=2.91;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-0.063;QD=13.18;ReadPosRankSum=0.509;SNPEFF_AMINO_ACID_CHANGE=Y3480;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:29,24:53:99:728,0,909
2    186664963    rs10931200    C    A    1179.64    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.863;DB;DP=96;Dels=0.0;FS=5.234;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.848;QD=12.29;ReadPosRankSum=0.288;SNPEFF_AMINO_ACID_CHANGE=L3644I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:51,45:96:99:1210,0,1541
2    186665432    rs36004074    G    A    1666.59    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.871;DB;DP=129;Dels=0.0;FS=8.041;HRun=4;HaplotypeScore=1.786;MQ=59.46;MQ0=0;MQRankSum=1.764;QD=12.92;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=G3800E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:64,65:129:99:1697,0,2012
2    186665824    rs11695215    A    G    744.62    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.063;DB;DP=61;Dels=0.0;FS=11.823;HRun=0;HaplotypeScore=1.9982;MQ=60.0;MQ0=0;MQRankSum=-2.002;QD=12.21;ReadPosRankSum=-0.858;SNPEFF_AMINO_ACID_CHANGE=N3931D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:36,25:61:99:775,0,1124
2    186667121    rs7605884    T    C    771.24    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.848;DB;DP=65;Dels=0.0;FS=4.975;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.159;QD=11.69;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=F4363S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:36,29:65:99:801,0,1167
2    186668935    rs13003744    A    G    863.74    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=60;Dels=0.0;FS=1.158;HRun=0;HaplotypeScore=0.5784;MQ=59.23;MQ0=0;MQRankSum=0.16;QD=14.4;ReadPosRankSum=-1.133;SNPEFF_AMINO_ACID_CHANGE=M4968V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:27,33:60:99:894,0,886
2    186670104    rs7576532    A    C    2835.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=E5357D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    1/1:0,84:85:99:2869,223,0
2    186670780    rs16827154    T    A    1189.38    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.081;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.369;QD=14.33;ReadPosRankSum=0.824;SNPEFF_AMINO_ACID_CHANGE=Y5583N;SNPEFF_CODON_CHANGE=Tac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:41,42:83:99:1219,0,1274
2    186670979    rs4666689    T    C    1475.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_AMINO_ACID_CHANGE=I5649T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1509,111,0
2    186671256    rs17826498    T    C    471.23    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.138;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.23;QD=12.74;ReadPosRankSum=-0.904;SNPEFF_AMINO_ACID_CHANGE=N5741;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:21,16:37:99:501,0,704
2    186671357    rs17826534    G    A    904.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.568;DB;DP=54;Dels=0.0;FS=3.958;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.548;QD=16.76;ReadPosRankSum=-1.419;SNPEFF_AMINO_ACID_CHANGE=R5775Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:24,30:54:99:935,0,625
2    186671912    rs1862066    G    A    1244.99    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=4.269;DB;DP=84;Dels=0.0;FS=4.373;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.269;QD=14.82;ReadPosRankSum=-0.888;SNPEFF_AMINO_ACID_CHANGE=R5960H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:39,45:84:99:1275,0,1150
2    186672527    rs72900086    T    A    674.03    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.033;DB;DP=46;Dels=0.0;FS=1.145;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.407;QD=14.65;ReadPosRankSum=1.176;SNPEFF_AMINO_ACID_CHANGE=L6165Q;SNPEFF_CODON_CHANGE=cTa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:22,24:46:99:704,0,700
2    186672897    rs4666690    A    G    646.98    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.803;DB;DP=56;Dels=0.0;FS=7.711;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-1.502;QD=11.55;ReadPosRankSum=-0.696;SNPEFF_AMINO_ACID_CHANGE=L6288;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186664424_186673860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:34,22:56:99:677,0,1026
2    186678241    rs79464337    A    AT    591.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.148;DB;DP=36;FS=0.0;HRun=4;HaplotypeScore=84.5906;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.629;QD=16.44;ReadPosRankSum=0.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343098    GT:AD:DP:GQ:PL    0/1:18,18:36:99:631,0,504
2    186678633    rs17826666    C    T    997.94    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=59;Dels=0.0;FS=1.053;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.114;QD=16.91;ReadPosRankSum=0.114;SNPEFF_AMINO_ACID_CHANGE=T6730I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186678272_186678769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    0/1:29,30:59:99:1028,0,839
2    186678887    rs2161035    T    C    72.06    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=6.0;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343098    GT:AD:DP:GQ:PL    0/1:8,4:12:99:102,0,300
2    186680041    rs2287606    G    T    200.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.932;QD=16.67;ReadPosRankSum=-2.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343098    GT:AD:DP:GQ:PL    0/1:4,8:12:99:230,0,135
2    186697876    rs1468999    A    G    1758.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_AMINO_ACID_CHANGE=T6883A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_186697817_186698017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424728    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1792,132,0
2    187364811    rs4144786    G    A    335.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477672    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
2    187364878    rs4144785    A    G    157.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.042;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=7.88;ReadPosRankSum=-0.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477672    GT:AD:DP:GQ:PL    0/1:12,8:20:99:188,0,412
2    187369013    rs80210458    T    TG    820.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=4;HaplotypeScore=49.9259;IndelType=I;MQ=55.94;MQ0=0;QD=39.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC018867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396985    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:862,63,0
2    187369037    rs11309895    GA    G    87.25    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=13;FS=0.0;HRun=10;HaplotypeScore=71.1643;IndelType=D;MQ=52.45;MQ0=0;MQRankSum=-1.133;QD=6.71;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC018867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396985    GT:AD:DP:GQ:PL    0/1:7,6:13:99:126,0,103
2    187370673    rs11690758    G    C    99.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.91;SNPEFF_AMINO_ACID_CHANGE=W152C;SNPEFF_CODON_CHANGE=tgG/tgC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187370467_187370818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544130    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:132,12,0
2    187373146    rs7558856    G    A    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421536    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    187455278    rs9333287    C    T    786.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:819,63,0
2    187487160    rs9333288    G    A    1859.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1893,138,0
2    187490371    rs2197787    T    G    1977.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.838;MQ=43.08;MQ0=0;MQRankSum=0.503;QD=22.99;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    1/1:2,82:86:99:2010,168,0
2    187490388    rs5836986    G    GT    1235.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.604;DB;DP=77;FS=3.321;HRun=1;HaplotypeScore=1122.6063;IndelType=I;MQ=41.02;MQ0=0;MQRankSum=-1.528;QD=16.05;ReadPosRankSum=1.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    1/1:71,6:77:99:1278,123,0
2    187490389    rs5836987    G    GTGTGT    3333.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DB;DP=75;FS=5.429;HRun=0;HaplotypeScore=1043.4352;IndelType=I;MQ=40.51;MQ0=0;MQRankSum=-0.752;QD=44.45;ReadPosRankSum=2.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    1/1:69,5:75:99:3334,124,0
2    187490389    rs28633327    G    T    108.46    HaplotypeScoreFilter13;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.102;DB;DP=77;Dels=0.0;FS=2.36;HRun=0;HaplotypeScore=13.8103;MQ=41.02;MQ0=0;MQRankSum=1.193;QD=1.41;ReadPosRankSum=-2.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    1/1:7,70:77:12.03:141,12,0
2    187490405    rs5836988    T    TGTGTGTGA    5472.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.236;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=832.712;IndelType=I;MQ=35.92;MQ0=0;MQRankSum=0.817;QD=85.51;ReadPosRankSum=-0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    1/1:21,27:64:99:5473,158,0
2    187497988    rs56088351    A    G    312    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.862;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;MQRankSum=0.277;QD=13.57;ReadPosRankSum=1.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    0/1:11,12:23:99:342,0,372
2    187501648    rs13430921    A    G    119.99    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=8.57;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    0/1:9,5:14:99:150,0,320
2    187501682    rs56136540    G    A    335.78    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.184;QD=20.99;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    0/1:6,10:16:99:366,0,164
2    187502846    rs13422838    T    C    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.36;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    0/1:2,2:4:67.59:71,0,68
2    187503226    rs4667108    T    C    650.64    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.254;DB;DP=39;Dels=0.0;FS=4.126;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.831;QD=16.68;ReadPosRankSum=1.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    0/1:18,21:39:99:681,0,486
2    187505486    rs3816375    A    G    32.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.74;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:62,0,32
2    187532010    rs41265951    G    T    166.45    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.932;QD=15.13;ReadPosRankSum=2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,171
2    187532373    rs2595391    T    G    749.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.31;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.082;QD=14.41;ReadPosRankSum=0.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261023    GT:AD:DP:GQ:PL    0/1:26,26:52:99:779,0,825
2    187532417    rs2230616    G    A    2688.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=V737I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187532398_187532503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433736    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2721,199,0
2    187533741    rs2290083    T    C    310.07    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=16.32;ReadPosRankSum=1.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460641    GT:AD:DP:GQ:PL    0/1:8,11:19:99:340,0,276
2    187558960    rs2276562    G    A    251.44    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.713;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.401;QD=17.96;ReadPosRankSum=-0.778;SNPEFF_AMINO_ACID_CHANGE=L20;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187558789_187559138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272804    GT:AD:DP:GQ:PL    0/1:3,11:14:88.16:281,0,88
2    187559047    rs2276563    G    GCAA    449.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=46.0638;IndelType=I;MQ=62.65;MQ0=0;QD=37.47;SNPEFF_AMINO_ACID_CHANGE=-50Q;SNPEFF_CODON_CHANGE=-/CAA;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_2_187558789_187559138;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272804    GT:AD:DP:GQ:PL    1/1:3,9:12:24.08:492,24,0
2    187604860    .    G    T    69.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.52;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272804    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,102
2    187608102    rs35021583    T    TC    109.17    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;FS=0.0;HRun=7;HaplotypeScore=24.0278;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=9.1;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272804    GT:AD:DP:GQ:PL    0/1:7,5:12:99:148,0,141
2    187611748    rs2247924    G    A    1572.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8606;MQ=58.95;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272804    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1606,126,0
2    187627567    rs2595381    G    A    543.55    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.275;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=13.59;ReadPosRankSum=-1.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272804    GT:AD:DP:GQ:PL    0/1:19,21:40:99:574,0,606
2    187692908    rs17852916    T    G    742.63    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=47;Dels=0.0;FS=4.094;HRun=0;HaplotypeScore=0.0;MQ=56.47;MQ0=0;MQRankSum=0.974;QD=15.8;ReadPosRankSum=0.203;SNPEFF_AMINO_ACID_CHANGE=R569;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187692562_187693517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:21,26:47:99:773,0,666
2    187692983    rs17856918    T    C    521.48    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.228;DB;DP=43;Dels=0.0;FS=14.179;HRun=2;HaplotypeScore=1.6649;MQ=54.39;MQ0=0;MQRankSum=0.41;QD=12.13;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=M544V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187692562_187693517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:22,21:43:99:551,0,597
2    187693003    rs10195632    A    T    453.91    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=37;Dels=0.0;FS=10.736;HRun=0;HaplotypeScore=0.9469;MQ=52.72;MQ0=0;MQRankSum=0.276;QD=12.27;ReadPosRankSum=-0.069;SNPEFF_AMINO_ACID_CHANGE=F537Y;SNPEFF_CODON_CHANGE=tTt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187692562_187693517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:20,17:37:99:484,0,569
2    187693044    rs17852915    C    T    538.79    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.74;MQ0=0;MQRankSum=0.805;QD=16.84;ReadPosRankSum=-0.64;SNPEFF_AMINO_ACID_CHANGE=V523;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187692562_187693517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:11,21:32:99:569,0,342
2    187693104    rs10172225    C    T    588.10    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.539;DB;DP=37;Dels=0.0;FS=9.491;HRun=0;HaplotypeScore=0.0;MQ=56.81;MQ0=0;MQRankSum=0.063;QD=15.89;ReadPosRankSum=-1.616;SNPEFF_AMINO_ACID_CHANGE=V503;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187692562_187693517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:18,19:37:99:618,0,536
2    187693155    rs10195758    A    T    535.46    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.108;DB;DP=46;Dels=0.0;FS=6.662;HRun=1;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=2.09;QD=11.64;ReadPosRankSum=0.697;SNPEFF_AMINO_ACID_CHANGE=D486E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187692562_187693517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:26,20:46:99:565,0,877
2    187693521    rs71953407    TA    T    254.59    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=21;FS=6.107;HRun=8;HaplotypeScore=52.3472;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.515;QD=12.12;ReadPosRankSum=-0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:9,12:21:99:294,0,163
2    187694410    rs6745572    C    T    249.32    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=17;Dels=0.0;FS=2.271;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.049;QD=14.67;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:7,10:17:99:279,0,210
2    187697883    rs10164815    A    G    300.65    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.917;DB;DP=33;Dels=0.0;FS=4.232;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.094;QD=9.11;ReadPosRankSum=-0.468;SNPEFF_AMINO_ACID_CHANGE=I302T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187697847_187697959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:21,12:33:99:331,0,714
2    187697996    rs10188850    C    T    131.61    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.23;ReadPosRankSum=0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:11,5:16:99:162,0,335
2    187698019    rs10189037    G    T    145.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.6;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,161
2    187698037    rs7609183    G    A    212.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
2    187698053    rs10188869    C    T    81.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.36;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:111,0,27
2    187698707    rs6434197    C    T    171.32    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=33;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.384;QD=5.19;ReadPosRankSum=0.707;SNPEFF_AMINO_ACID_CHANGE=C265Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_187698673_187698757;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    0/1:24,9:33:99:201,0,694
2    187712724    rs6750068    A    T    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295131    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    188216783    rs858744    C    T    724.15    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4725;MQ=59.46;MQ0=0;MQRankSum=-0.868;QD=16.84;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392370    GT:AD:DP:GQ:PL    0/1:19,24:43:99:754,0,621
2    188216807    rs858745    T    C    1547.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=59.49;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392370    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1580,123,0
2    188224057    rs1706287    A    G    89.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392370    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
2    188227921    rs698582    A    G    76.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.78;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392370    GT:AD:DP:GQ:PL    0/1:2,4:6:68.94:107,0,69
2    188243633    rs3771084    A    G    900.71    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8053;MQ=59.62;MQ0=0;MQRankSum=-0.485;QD=14.77;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410102    GT:AD:DP:GQ:PL    0/1:28,33:61:99:931,0,826
2    188245640    rs1511877    G    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410102    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    188250301    rs698577    T    A    1404.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=N8Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_188250272_188250358;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCRL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392370    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1438,105,0
2    188332692    rs8176592    A    G    397.37    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.403;QD=17.28;ReadPosRankSum=1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233156    GT:AD:DP:GQ:PL    0/1:10,13:23:99:427,0,345
2    188343497    rs7586970    T    C    328.36    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.11;DB;DP=32;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=10.26;ReadPosRankSum=-0.115;SNPEFF_AMINO_ACID_CHANGE=N221S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_188343312_188343530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFPI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339091    GT:AD:DP:GQ:PL    0/1:19,13:32:99:358,0,527
2    188348670    rs3213739    T    G    83.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233156    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    189446818    rs1354906    T    C    101.12    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.22;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GULP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359135    GT:AD:DP:GQ:PL    0/1:1,4:5:24.98:131,0,25
2    189448896    rs2048138    A    T    1123.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GULP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359135    GT:AD:DP:GQ:PL    1/1:0,33:33:93.29:1156,93,0
2    189853350    .    C    G    470.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=13.06;ReadPosRankSum=-0.653;SNPEFF_AMINO_ACID_CHANGE=P206R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189853316_189853369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    0/1:16,20:36:99:500,0,513
2    189862048    rs7579815    G    C    700.96    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=0.861;DB;DP=63;Dels=0.0;FS=5.076;HRun=0;HaplotypeScore=1.9134;MQ=59.63;MQ0=0;MQRankSum=-1.004;QD=11.13;ReadPosRankSum=-1.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    0/1:38,25:63:99:731,0,1223
2    189862097    rs7579903    G    A    863.10    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.464;DB;DP=64;Dels=0.0;FS=5.316;HRun=1;HaplotypeScore=0.7887;MQ=59.64;MQ0=0;MQRankSum=0.397;QD=13.49;ReadPosRankSum=1.85;SNPEFF_AMINO_ACID_CHANGE=Q617;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189862062_189862115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    0/1:34,30:64:99:893,0,1077
2    189862203    rs3134654    C    T    611.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:644,48,0
2    189863389    rs13306272    C    T    285.78    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=27;Dels=0.0;FS=1.598;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.591;QD=10.58;ReadPosRankSum=-1.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    0/1:15,12:27:99:316,0,447
2    189864080    rs1800255    G    A    203.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=16.94;ReadPosRankSum=2.228;SNPEFF_AMINO_ACID_CHANGE=A698T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189864011_189864109;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    0/1:4,8:12:99:233,0,114
2    189864582    rs1801184    T    C    77.96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.66;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=G748;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189864568_189864621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    0/1:5,4:9:99:108,0,102
2    189866199    rs2271682    T    A    2113.76    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=4.77;DB;DP=129;Dels=0.0;FS=6.631;HRun=1;HaplotypeScore=3.685;MQ=59.5;MQ0=0;MQRankSum=0.32;QD=16.39;ReadPosRankSum=-0.542;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    0/1:58,71:129:99:2144,0,1812
2    189874873    rs10204508    C    A    497.71    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.387;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=13.83;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304636    GT:AD:DP:GQ:PL    0/1:15,20:36:99:528,0,451
2    189875421    rs1516446    T    G    1908    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=34.69;SNPEFF_AMINO_ACID_CHANGE=H1050Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189875374_189875616;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL3A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317840    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1941,141,0
2    189899541    rs4666770    T    C    690.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:724,54,0
2    189899572    rs7420715    T    C    1002.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1035,75,0
2    189901295    rs12693526    G    A    345.34    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=20.31;ReadPosRankSum=-1.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:6,11:17:99:375,0,200
2    189904203    rs10208525    A    G    354.96    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.02;QD=14.79;ReadPosRankSum=-0.732;SNPEFF_AMINO_ACID_CHANGE=Y1240;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189903998_189904289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:10,14:24:99:385,0,318
2    189904233    rs10197596    T    G    309.21    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.958;DB;DP=26;Dels=0.0;FS=3.619;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.356;QD=11.89;ReadPosRankSum=1.177;SNPEFF_AMINO_ACID_CHANGE=T1230;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189903998_189904289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:11,15:26:99:339,0,339
2    189904413    rs72902330    C    T    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.11;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:2,2:4:63.86:70,0,64
2    189907272    rs10207530    T    C    44.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.76;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
2    189907676    rs13392501    A    G    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,71
2    189907937    rs6434312    A    G    1218.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=G1137;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189907877_189907984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,38:38:96.29:1251,96,0
2    189910066    rs145676026    ATG    A    107.64    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=54.6422;IndelType=D;MQ=58.2;MQ0=0;MQRankSum=-0.676;QD=8.28;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:8,5:13:99:147,0,195
2    189917092    rs72902380    C    T    64.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.16;ReadPosRankSum=1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470524    GT:AD:DP:GQ:PL    0/1:6,3:9:94.47:94,0,180
2    189918337    rs6750027    T    C    329.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470524    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:362,27,0
2    189918787    rs6738371    C    T    117.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=15;Dels=0.0;FS=9.961;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.674;QD=7.82;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470524    GT:AD:DP:GQ:PL    0/1:10,5:15:99:147,0,361
2    189922920    rs72902385    A    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    189923104    rs7556733    A    G    749.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:782,60,0
2    189923401    rs10178611    T    C    78.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.01;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:2,4:6:67.19:108,0,67
2    189923434    rs12989558    A    C    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,68
2    189923630    rs67306642    AT    A    497.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=12;HaplotypeScore=106.8299;IndelType=D;MQ=58.44;MQ0=0;QD=15.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:7,23:32:70.75:540,71,0
2    189925548    rs6414122    T    A    913.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=58.45;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,33:33:69.23:947,69,0
2    189927506    rs7424947    C    G    874.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,28:28:78.20:908,78,0
2    189928834    rs74497802    TG    T    209.74    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=2.372;DB;DP=15;FS=0.0;HRun=1;HaplotypeScore=40.3714;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.637;QD=13.98;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:8,7:15:99:249,0,326
2    189930854    rs6434316    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    189932831    rs2229495    T    C    1988.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=P437;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189932741_189932839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2022,159,0
2    189933686    rs72904419    G    A    116.93    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.7;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:3,4:7:88.15:147,0,88
2    189936687    rs6434317    T    G    149.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.6;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:4,5:9:99:179,0,133
2    189943121    rs67456396    GA    G    582.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=12;HaplotypeScore=181.3952;IndelType=D;MQ=58.33;MQ0=0;QD=15.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:3,31:37:85.78:624,86,0
2    189945654    rs57206096    T    G    453.17    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=40;Dels=0.0;FS=1.964;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.328;QD=11.33;ReadPosRankSum=0.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:23,17:40:99:483,0,780
2    189948549    rs55711740    T    C    40.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
2    189948651    rs55963648    G    T    209.34    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.42;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.613;QD=8.72;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:15,9:24:99:239,0,517
2    189948696    rs56310996    G    A    493.35    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.834;DB;DP=42;Dels=0.0;FS=6.94;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=11.75;ReadPosRankSum=0.809;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:23,19:42:99:523,0,805
2    189949759    rs58532741    C    T    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
2    189950556    rs60355473    G    A    404.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.51;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.113;QD=13.48;ReadPosRankSum=-0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:15,15:30:99:434,0,468
2    189953508    rs58106884    C    T    482.78    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.446;DB;DP=46;Dels=0.0;FS=2.912;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.925;QD=10.5;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:28,18:46:99:513,0,782
2    189953551    rs58243388    G    A    428.55    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.576;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.139;QD=13.39;ReadPosRankSum=-0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:17,15:32:99:459,0,598
2    189962199    rs72906358    A    G    83.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.92;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:114,0,29
2    189964747    rs55977069    G    T    218.57    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.33;MQ0=0;MQRankSum=-1.093;QD=15.61;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:6,8:14:99:249,0,208
2    189964891    rs56380683    A    G    507.64    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=38;Dels=0.0;FS=3.268;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.961;QD=13.36;ReadPosRankSum=1.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:16,22:38:99:538,0,461
2    189964970    rs55765720    T    A    48.14    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.386;QD=4.81;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:7,3:10:78.13:78,0,241
2    189968808    rs147860045    TA    T    154.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=28.7942;IndelType=D;MQ=61.78;MQ0=0;MQRankSum=0.869;QD=12.86;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    0/1:6,6:12:99:193,0,213
2    189974794    rs4128538    G    A    406.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:440,36,0
2    189974958    rs4128539    G    T    2795.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=T105;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_189974951_189975175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374866    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2828,217,0
2    190313396    rs6738193    A    G    104.32    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=-0.825;QD=9.48;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314761    GT:AD:DP:GQ:PL    0/1:6,5:11:99:134,0,212
2    190319990    rs1224958    A    G    1037    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=35.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475596    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1070,81,0
2    190323376    rs2289225    A    G    189.61    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.664;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.792;QD=9.48;ReadPosRankSum=0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472286    GT:AD:DP:GQ:PL    0/1:13,7:20:99:220,0,460
2    190327126    rs2304702    C    G    643.67    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6809;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=18.93;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314761    GT:AD:DP:GQ:PL    0/1:14,20:34:99:674,0,446
2    190327400    rs2304701    T    C    594.95    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=41;Dels=0.0;FS=4.643;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=14.51;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314761    GT:AD:DP:GQ:PL    0/1:21,20:41:99:625,0,729
2    190437482    rs72209802    C    CA    951.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.444;DB;DP=56;FS=7.621;HRun=11;HaplotypeScore=212.8915;IndelType=I;MQ=58.59;MQ0=0;MQRankSum=0.259;QD=17.0;ReadPosRankSum=1.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC40A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418714    GT:AD:DP:GQ:PL    1/1:14,38:56:17.57:994,18,0
2    190444392    rs1123109    T    C    332.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC40A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427419    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
2    190444630    rs1439816    C    G    1295.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC40A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261024    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1328,96,0
2    190445194    rs11568351    G    C    1539.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_AMINO_ACID_CHANGE=P72R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_190445144_190445288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC40A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000481497    GT:AD:DP:GQ:PL    1/1:0,52:53:99:1572,126,0
2    190445284    rs13008848    C    G    820.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.29;SNPEFF_AMINO_ACID_CHANGE=C42S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_190445144_190445288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC40A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000481497    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:853,63,0
2    190531426    rs1437880    G    A    2777.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.82;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=G190R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_190530767_190532322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNSD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260952    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2811,205,0
2    190535538    rs893782    C    T    170.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420250    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
2    190554759    rs62185872    T    A    117.53    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9654;MQ=58.55;MQ0=0;MQRankSum=-1.164;QD=7.35;ReadPosRankSum=-0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    0/1:11,5:16:99:148,0,376
2    190556898    rs16831873    C    T    77.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.47;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:107,0,68
2    190570001    rs11319823    TA    T    895.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=10;HaplotypeScore=109.3247;IndelType=D;MQ=60.77;MQ0=0;QD=22.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    1/1:4,36:40:99:937,108,0
2    190593168    rs3067424    ATTTTT    A    565.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=20;FS=0.0;HRun=5;HaplotypeScore=114.292;IndelType=D;MQ=56.95;MQ0=0;MQRankSum=-1.096;QD=28.3;ReadPosRankSum=-0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    0/1:10,10:20:99:605,0,875
2    190593311    rs1225087    C    G    808.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:842,63,0
2    190595258    rs1225090    G    T    1117.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=L1006F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_190595221_190595327;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431575    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1151,87,0
2    190602513    rs1225099    T    C    1685.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=31.21;SNPEFF_AMINO_ACID_CHANGE=F1105;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_190602409_190602567;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431575    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1718,138,0
2    190603201    rs111580509    T    TA    386.73    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.598;DB;DP=28;FS=0.0;HRun=10;HaplotypeScore=85.0928;IndelType=I;MQ=59.95;MQ0=0;MQRankSum=-1.462;QD=13.81;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    0/1:12,16:28:99:426,0,212
2    190610796    rs2254144    A    G    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264151    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    190610890    rs2254146    G    A    528.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264151    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:562,42,0
2    190611084    rs13002216    T    C    2596.32    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.284;DB;DP=195;Dels=0.0;FS=11.041;HRun=0;HaplotypeScore=5.2765;MQ=59.88;MQ0=0;MQRankSum=-0.945;QD=13.31;ReadPosRankSum=0.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264151    GT:AD:DP:GQ:PL    0/1:101,94:195:99:2626,0,3069
2    190611414    rs2254166    T    C    449    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:482,36,0
2    190611459    rs2254167    A    G    152.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    1/1:0,5:6:15.05:185,15,0
2    190615176    rs67364820    AG    A    226    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=69.5389;IndelType=D;MQ=60.0;MQ0=0;QD=20.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281412    GT:AD:DP:GQ:PL    1/1:0,11:11:32.94:268,33,0
2    190617643    rs2243876    A    G    4979.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3404;MQ=59.37;MQ0=0;QD=34.11;SNPEFF_AMINO_ACID_CHANGE=N342;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_190617575_190617705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264151    GT:AD:DP:GQ:PL    1/1:0,145:146:99:4980,376,0
2    190620492    rs2244190    G    A    174.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476208    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
2    190620504    rs2278591    C    G    75.02    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.76;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476208    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:105,0,25
2    190636411    rs6942    C    G    303.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.294;QD=25.29;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORMDL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409519    GT:AD:DP:GQ:PL    0/1:3,9:12:90.93:333,0,91
2    190640475    rs3816196    A    G    374.83    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.063;DB;DP=33;Dels=0.0;FS=3.581;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.883;QD=11.36;ReadPosRankSum=-0.955;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC013468.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424876    GT:AD:DP:GQ:PL    0/1:17,16:33:99:405,0,549
2    190647108    rs10168387    T    C    433.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORMDL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325795    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:467,36,0
2    190660536    rs143323454    G    T    224.03    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.625;DB;DP=38;Dels=0.0;FS=3.227;HRun=0;HaplotypeScore=0.9958;MQ=59.39;MQ0=0;MQRankSum=-0.939;QD=5.9;ReadPosRankSum=-0.684;SNPEFF_AMINO_ACID_CHANGE=G58;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_190660495_190660677;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374826    GT:AD:DP:GQ:PL    0/1:25,13:38:99:254,0,838
2    190660537    rs143265397    G    A    223.99    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=38;Dels=0.0;FS=3.227;HRun=1;HaplotypeScore=0.9958;MQ=59.39;MQ0=0;MQRankSum=-0.652;QD=5.89;ReadPosRankSum=-0.62;SNPEFF_AMINO_ACID_CHANGE=E59K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_190660495_190660677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374826    GT:AD:DP:GQ:PL    0/1:25,13:38:99:254,0,842
2    190670539    rs28381987    T    TA    562    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.724;DB;DP=53;FS=6.559;HRun=11;HaplotypeScore=154.5454;IndelType=I;MQ=60.38;MQ0=0;MQRankSum=1.754;QD=10.6;ReadPosRankSum=-0.557;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_190670378_190671780;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000409985    GT:AD:DP:GQ:PL    0/1:28,25:53:99:601,0,372
2    190670730    rs114656673    A    G    183.01    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=22.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374826    GT:AD:DP:GQ:PL    0/1:2,6:8:56.36:213,0,56
2    190682632    rs3791773    G    C    190.82    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=19.08;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392338    GT:AD:DP:GQ:PL    0/1:4,6:10:99:221,0,135
2    190788844    rs35940796    T    TC    3973.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.967;DB;DP=94;FS=3.979;HRun=0;HaplotypeScore=216.8565;IndelType=I;MQ=38.2;MQ0=14;MQRankSum=-0.604;QD=33.39;ReadPosRankSum=1.329;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478197    GT:AD:DP:GQ:PL    1/1:9,110:94:99:3973,252,0
2    190926859    rs11333758    GT    G    232.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.162;DB;DP=21;FS=0.0;HRun=3;HaplotypeScore=51.1552;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=-0.462;QD=11.08;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260950    GT:AD:DP:GQ:PL    0/1:12,9:21:99:272,0,456
2    191159232    rs188339    A    G    673.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359678    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:707,54,0
2    191161622    rs1058180    T    C    1278.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_AMINO_ACID_CHANGE=T100A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_191161539_191161679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBCH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409934    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1311,102,0
2    191161845    rs2582743    C    T    93.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359678    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    191175639    rs75794403    GT    G    138.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=12.2317;IndelType=D;MQ=60.0;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359678    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:180,15,0
2    191184475    rs291466    A    G    414.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_2_191184442_191184771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBCH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000359678    GT:AD:DP:GQ:PL    1/1:0,12:13:36.11:447,36,0
2    191184524    rs3749022    C    T    300.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=27.28;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_191184442_191184771;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBCH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359678    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:333,24,0
2    191301368    rs9646748    A    G    611.88    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=54;Dels=0.0;FS=2.681;HRun=2;HaplotypeScore=1.3123;MQ=59.57;MQ0=0;MQRankSum=-0.296;QD=11.33;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=R205G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_191300621_191302287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281416    GT:AD:DP:GQ:PL    0/1:30,24:54:99:642,0,1019
2    191334459    .    A    ATTTTTAT    1396.38    PASS    AC=2;AF=1.00;AN=2;DP=19;FS=0.0;HRun=0;HaplotypeScore=120.7151;IndelType=I;MQ=39.43;MQ0=0;QD=73.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281416    GT:AD:DP:GQ:PL    1/1:3,10:19:48.15:1438,48,0
2    191354491    rs3811609    T    C    106.90    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=15.27;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281416    GT:AD:DP:GQ:PL    0/1:3,4:7:94.52:137,0,95
2    191354658    rs59123011    C    CCT    240.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=10.6861;IndelType=I;MQ=62.13;MQ0=0;QD=48.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281416    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:283,15,0
2    191373775    rs6707244    C    T    963.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414176    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:996,81,0
2    191375375    rs6712426    G    A    97.76    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=8.89;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444545    GT:AD:DP:GQ:PL    0/1:6,5:11:99:128,0,226
2    191379268    rs4586658    G    A    491.64    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.094;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8665;MQ=58.89;MQ0=0;MQRankSum=0.492;QD=11.71;ReadPosRankSum=-0.328;SNPEFF_AMINO_ACID_CHANGE=A288;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_191379179_191379404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM194B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409150    GT:AD:DP:GQ:PL    0/1:24,17:42:99:522,0,725
2    191383348    rs12053190    A    G    170.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.589;QD=21.32;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421038    GT:AD:DP:GQ:PL    0/1:2,6:8:61.58:201,0,62
2    191390126    rs10931458    G    A    1258.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.954;DB;DP=100;Dels=0.0;FS=3.775;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-1.155;QD=12.58;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409150    GT:AD:DP:GQ:PL    0/1:50,50:100:99:1288,0,1621
2    191535311    rs2109957    T    C    407.74    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.45;MQ0=0;MQRankSum=-1.083;QD=27.18;ReadPosRankSum=1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337386    GT:AD:DP:GQ:PL    0/1:3,12:15:71.35:438,0,71
2    191537793    rs5837195    GT    G    120.73    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=40;FS=0.0;HRun=15;HaplotypeScore=209.6618;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=-1.45;QD=3.02;ReadPosRankSum=1.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337386    GT:AD:DP:GQ:PL    0/1:22,13:40:99:160,0,375
2    191765206    rs3771313    T    C    444.39    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.425;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.22;QD=19.32;ReadPosRankSum=1.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479552    GT:AD:DP:GQ:PL    0/1:9,14:23:99:474,0,285
2    191818065    rs6434430    T    C    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320717    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
2    191818243    rs72239530    ATG    A    888.88    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=4.276;DB;DP=59;FS=0.0;HRun=0;HaplotypeScore=194.7003;IndelType=D;MQ=60.73;MQ0=0;MQRankSum=2.119;QD=15.07;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320717    GT:AD:DP:GQ:PL    0/1:33,26:59:99:928,0,1526
2    191839464    rs2066793    G    A    261.31    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=20.1;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392322    GT:AD:DP:GQ:PL    0/1:5,8:13:99:291,0,107
2    191841759    rs2066804    G    A    230.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.561;DB;DP=27;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=8.55;ReadPosRankSum=-1.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464072    GT:AD:DP:GQ:PL    0/1:15,12:27:99:261,0,513
2    191843830    rs2280235    A    G    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.19;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361099    GT:AD:DP:GQ:PL    0/1:2,2:4:54.83:63,0,55
2    191848312    rs12477076    T    C    1783.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361099    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1816,132,0
2    191873553    rs10199181    A    T    73.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432058    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:104,0,70
2    191896045    rs1517351    T    G    197.57    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.244;QD=16.46;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470708    GT:AD:DP:GQ:PL    0/1:5,7:12:99:228,0,173
2    191897540    rs925847    C    T    70.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.76;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470708    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,107
2    191898886    rs2459609    T    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470708    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
2    191922841    rs3024866    G    A    852.19    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=43;Dels=0.0;FS=1.335;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=19.82;ReadPosRankSum=-0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358470    GT:AD:DP:GQ:PL    0/1:14,29:43:99:882,0,477
2    191923026    rs1818625    T    C    183.12    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.666;QD=20.35;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358470    GT:AD:DP:GQ:PL    0/1:2,7:9:59.39:213,0,59
2    191923064    rs1850442    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358470    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
2    191938124    rs3024840    T    A    132.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413064    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:165,12,0
2    191996518    rs1551443    T    C    632.02    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=29;Dels=0.0;FS=2.741;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.071;QD=21.79;ReadPosRankSum=0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358470    GT:AD:DP:GQ:PL    0/1:9,20:29:99:662,0,294
2    192161058    rs11397643    G    GT    581.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=8;HaplotypeScore=57.2822;IndelType=I;MQ=60.0;MQ0=0;QD=23.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420448    GT:AD:DP:GQ:PL    1/1:8,17:25:54.16:623,54,0
2    192214833    rs67146186    A    T    544.66    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=34;Dels=0.0;FS=9.779;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.431;QD=16.02;ReadPosRankSum=1.949;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418908    GT:AD:DP:GQ:PL    0/1:18,16:34:99:575,0,565
2    192214966    rs59642822    T    C    592.43    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=15.19;ReadPosRankSum=-0.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418908    GT:AD:DP:GQ:PL    0/1:17,22:39:99:622,0,483
2    192225294    rs2138913    A    G    905.32    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.843;DB;DP=73;Dels=0.0;FS=1.578;HRun=0;HaplotypeScore=0.734;MQ=59.05;MQ0=0;MQRankSum=-0.636;QD=12.4;ReadPosRankSum=-0.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304164    GT:AD:DP:GQ:PL    0/1:39,34:73:99:935,0,1357
2    192225477    rs71403288    G    GTGTTGTTGT    1300.86    PASS    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.305;DB;DP=75;FS=0.0;HRun=0;HaplotypeScore=550.9215;IndelType=I;MQ=56.52;MQ0=0;MQRankSum=-0.021;QD=17.34;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304164    GT:AD:DP:GQ:PL    0/1:60,9:75:99:1340,0,1179
2    192226908    rs2271769    G    C    213.83    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=16.45;ReadPosRankSum=-1.855;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304164    GT:AD:DP:GQ:PL    0/1:5,8:13:99:244,0,149
2    192247808    rs34460997    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304164    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    192247836    rs4641883    C    T    112.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304164    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
2    192250342    rs34785192    A    T    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
2    192250543    rs13000398    A    G    2426.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2064;MQ=59.66;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496992    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2460,187,0
2    192250568    rs13026888    T    C    3963.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.79;MQ0=0;QD=36.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496992    GT:AD:DP:GQ:PL    1/1:0,108:110:99:3963,292,0
2    192250726    rs13018796    G    A    8440.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=248;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.0739;MQ=59.46;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=E490;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_192250610_192250810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304164    GT:AD:DP:GQ:PL    1/1:0,247:248:99:8441,623,0
2    192273583    rs2203749    A    G    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304164    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    192279327    rs2271767    T    C    1783.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=L1002;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_192279243_192279395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392316    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1817,132,0
2    192283457    rs4435396    C    T    574.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304164    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:608,45,0
2    192548841    .    TA    T    48.55    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DP=12;FS=0.0;HRun=15;HaplotypeScore=79.242;IndelType=D;MQ=58.05;MQ0=0;MQRankSum=0.0;QD=4.05;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBFC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462712    GT:AD:DP:GQ:PL    0/1:5,5:12:60.77:88,0,61
2    192701393    rs10167187    A    G    1325.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=G178;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_192699028_192701443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDPR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304141    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1358,99,0
2    192711162    rs4471838    A    C    255.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304141    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:289,21,0
2    192815312    rs10194593    G    C    172.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.422;QD=19.22;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272771    GT:AD:DP:GQ:PL    0/1:3,6:9:99:203,0,101
2    192815323    rs10170778    A    G    143.12    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.221;QD=17.89;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272771    GT:AD:DP:GQ:PL    0/1:3,5:8:99:173,0,101
2    192820898    rs7606017    T    G    114.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.036;QD=11.49;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272771    GT:AD:DP:GQ:PL    0/1:4,6:10:99:145,0,140
2    192922256    rs3738883    T    G    116.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272771    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
2    193048895    rs3738882    C    G    600.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272771    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:633,48,0
2    193048968    .    G    T    165.33    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.983;DP=48;Dels=0.0;FS=25.092;HRun=2;HaplotypeScore=4.2298;MQ=49.5;MQ0=0;MQRankSum=-3.54;QD=3.44;ReadPosRankSum=3.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272771    GT:AD:DP:GQ:PL    0/1:19,29:48:99:195,0,452
2    194855680    rs7591690    C    T    3537.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.7499;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3537,268,0
2    194856006    rs2884356    C    T    895.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:928,69,0
2    195052314    rs9808251    T    C    1404    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC068129.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453073    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1437,105,0
2    195052367    rs9808060    C    A    1840.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=37.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC068129.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453073    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1873,144,0
2    196544630    rs35514309    A    C    110.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.76;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359634    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,141
2    196581295    rs3841858    T    TGTCTAG    949.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.065;DB;DP=20;FS=3.522;HRun=0;HaplotypeScore=88.9152;IndelType=I;MQ=49.57;MQ0=0;MQRankSum=-2.888;QD=47.5;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359634    GT:AD:DP:GQ:PL    0/1:10,8:20:99:989,0,523
2    196582816    rs842736    T    C    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465851    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    196602582    rs75708451    A    AAAT    522.53    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.933;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=70.6638;IndelType=I;MQ=49.17;MQ0=0;MQRankSum=-2.133;QD=37.32;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438565    GT:AD:DP:GQ:PL    0/1:6,8:14:99:562,0,182
2    196602614    .    G    GAAAT    303.31    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.253;DP=20;FS=5.563;HRun=0;HaplotypeScore=117.7735;IndelType=I;MQ=52.65;MQ0=0;MQRankSum=1.479;QD=15.17;ReadPosRankSum=0.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438565    GT:AD:DP:GQ:PL    0/1:15,5:20:99:342,0,641
2    196619340    rs1866451    T    G    275.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:308,24,0
2    196636662    rs1145939    C    G    836.87    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.982;DB;DP=54;Dels=0.0;FS=2.144;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.563;QD=15.5;ReadPosRankSum=-0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:26,28:54:99:867,0,863
2    196663997    rs7567285    T    C    1188.69    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.859;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=16.74;ReadPosRankSum=0.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:33,38:71:99:1219,0,1042
2    196673533    rs13411834    A    G    1478.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9989;MQ=59.53;MQ0=0;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=L3319P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_196673406_196673600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1511,126,0
2    196681284    rs2280452    A    T    314.14    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.244;QD=18.48;ReadPosRankSum=-1.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493844    GT:AD:DP:GQ:PL    0/1:7,10:17:99:344,0,241
2    196682630    rs975417    C    A    156.72    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=12.06;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:6,7:13:99:187,0,197
2    196722541    rs10497771    C    G    108.07    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.0;QD=15.44;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,104
2    196756535    rs35147831    GA    G    327.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=11;HaplotypeScore=84.6798;IndelType=D;MQ=58.95;MQ0=0;QD=14.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475293    GT:AD:DP:GQ:PL    1/1:6,16:22:44.92:369,45,0
2    196791276    rs1489802    T    G    495.22    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.069;DB;DP=52;Dels=0.0;FS=11.371;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.626;QD=9.52;ReadPosRankSum=2.296;SNPEFF_AMINO_ACID_CHANGE=A1162;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_196791150_196791290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:34,18:52:99:525,0,998
2    196849453    rs17363011    C    T    706.74    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=38;Dels=0.0;FS=5.132;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.117;QD=18.6;ReadPosRankSum=0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:17,21:38:99:737,0,554
2    196849517    rs17363053    T    C    225.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=58.55;MQ0=0;MQRankSum=0.263;QD=14.08;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:8,8:16:99:255,0,267
2    196851911    rs10931715    G    A    475.29    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.832;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.63;QD=13.98;ReadPosRankSum=0.52;SNPEFF_AMINO_ACID_CHANGE=R545C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_196851790_196851917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:19,15:34:99:505,0,636
2    196866420    rs6434811    C    T    2675.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.7;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=T384;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_196866399_196866582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2709,196,0
2    196891449    rs1072600    T    C    498.90    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.798;DB;DP=28;Dels=0.0;FS=5.764;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.846;QD=17.82;ReadPosRankSum=1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427816    GT:AD:DP:GQ:PL    0/1:10,18:28:99:529,0,331
2    196912067    rs4850381    A    G    816.06    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=3.257;DB;DP=64;Dels=0.0;FS=2.886;HRun=0;HaplotypeScore=1.5592;MQ=59.28;MQ0=0;MQRankSum=-0.505;QD=12.75;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:35,29:64:99:846,0,1139
2    196915991    rs10174065    A    G    1163.40    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=0.602;DB;DP=83;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.482;QD=14.02;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312428    GT:AD:DP:GQ:PL    0/1:36,47:83:99:1193,0,1282
2    197004185    rs11888166    G    A    81.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.36;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263955    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:111,0,25
2    197004439    rs1054537    A    G    1505.69    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.944;DB;DP=111;Dels=0.0;FS=1.554;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.415;QD=13.56;ReadPosRankSum=-0.427;SNPEFF_AMINO_ACID_CHANGE=I247;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_197004344_197004523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263955    GT:AD:DP:GQ:PL    0/1:54,57:111:99:1536,0,1652
2    197008529    rs1568368    C    T    105.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6803;MQ=56.62;MQ0=0;MQRankSum=0.937;QD=15.07;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263955    GT:AD:DP:GQ:PL    0/1:3,4:7:99:135,0,105
2    197010527    rs2271887    A    C    39.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.248;QD=4.36;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263955    GT:AD:DP:GQ:PL    0/1:6,3:9:69.27:69,0,229
2    197010823    rs2271888    C    T    96.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263955    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,174
2    197021086    rs6712631    C    T    160.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=16.01;ReadPosRankSum=1.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420683    GT:AD:DP:GQ:PL    0/1:4,6:10:99:190,0,132
2    197021141    rs6712829    G    A    324.26    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.266;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.612;QD=17.07;ReadPosRankSum=-0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420683    GT:AD:DP:GQ:PL    0/1:9,10:19:99:354,0,317
2    197021276    rs10931726    T    C    1011.02    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.199;DB;DP=68;Dels=0.0;FS=2.101;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.069;QD=14.87;ReadPosRankSum=0.483;SNPEFF_AMINO_ACID_CHANGE=R74;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_197021163_197021375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263955    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1041,0,1128
2    197021372    rs12478353    T    A    946.59    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.911;DB;DP=77;Dels=0.0;FS=2.24;HRun=0;HaplotypeScore=4.2046;MQ=59.7;MQ0=0;MQRankSum=1.241;QD=12.14;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=G42;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_197021163_197021375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263955    GT:AD:DP:GQ:PL    0/1:38,39:77:99:977,0,1147
2    197027792    rs1519602    T    G    111.06    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.21;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449152    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:141,0,27
2    197065889    rs3795921    A    G    210.08    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=12.36;ReadPosRankSum=1.203;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    0/1:9,8:17:99:240,0,290
2    197065964    rs3820908    C    A    441.25    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.712;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=12.61;ReadPosRankSum=0.381;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    0/1:19,16:35:99:471,0,563
2    197066175    rs4566380    T    G    58.54    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=19;Dels=0.05;FS=0.0;HRun=2;HaplotypeScore=1.933;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=2.93;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    0/1:10,9:19:88.54:89,0,352
2    197084587    rs1531113    T    C    174.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
2    197084595    rs1531114    T    C    255.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
2    197085179    rs3816516    C    T    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
2    197104929    rs10176696    G    A    34.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498146    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
2    197106759    rs2045277    T    C    2576.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5678;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2609,202,0
2    197107082    rs2290511    A    G    87.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    197118729    rs4850690    C    T    1569.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=36.49;SNPEFF_AMINO_ACID_CHANGE=S1148;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_197118644_197118753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1602,120,0
2    197122493    rs6731238    T    G    1542.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=37.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1576,117,0
2    197135806    rs4850693    T    C    149.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
2    197143029    rs4850391    G    T    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
2    197171104    rs6729640    G    A    369.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:403,30,0
2    197171175    rs4241189    C    T    1066.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9623;MQ=59.28;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,32:32:84.25:1100,84,0
2    197171183    rs12468199    C    T    1095.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=29.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,37:37:90.26:1129,90,0
2    197172816    rs2305567    G    A    396.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=12;Dels=0.0;FS=10.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.738;QD=33.0;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:1,11:12:6.49:427,6,0
2    197184321    rs1531111    C    T    1192.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.57;SNPEFF_AMINO_ACID_CHANGE=P431;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_197183276_197184628;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,39:39:93.30:1225,93,0
2    197298222    rs2204641    T    C    475    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:508,39,0
2    197298232    rs2204640    C    T    359.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260983    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:393,30,0
2    197504545    rs1879128    C    G    67.13    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.573;QD=6.71;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272831    GT:AD:DP:GQ:PL    0/1:7,3:10:97.12:97,0,167
2    197521252    rs1519678    C    T    430.45    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.976;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.082;QD=10.25;ReadPosRankSum=0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272831    GT:AD:DP:GQ:PL    0/1:25,17:42:99:460,0,879
2    197531737    rs2376098    C    G    281.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.915;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.07;MQ0=0;MQRankSum=1.137;QD=11.26;ReadPosRankSum=0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272831    GT:AD:DP:GQ:PL    0/1:15,10:25:99:312,0,527
2    197531808    rs4850721    C    G    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272831    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,109
2    197534692    rs7590083    C    T    950.27    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=3.924;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.861;QD=18.27;ReadPosRankSum=1.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471546    GT:AD:DP:GQ:PL    0/1:23,29:52:99:980,0,723
2    197566068    rs6725610    G    A    36.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.38;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272831    GT:AD:DP:GQ:PL    0/1:3,2:5:66.91:67,0,98
2    197584504    rs2680970    C    T    343.35    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.272;QD=19.07;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461825    GT:AD:DP:GQ:PL    0/1:7,11:18:99:373,0,201
2    197593787    rs2460436    C    T    299.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=19.99;ReadPosRankSum=1.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463826    GT:AD:DP:GQ:PL    0/1:6,9:15:99:330,0,199
2    197594203    rs2577580    G    C    762.63    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.494;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;MQRankSum=1.804;QD=14.95;ReadPosRankSum=-0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463826    GT:AD:DP:GQ:PL    0/1:26,25:51:99:793,0,846
2    197595762    rs2680967    G    A    279.05    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.939;QD=14.69;ReadPosRankSum=2.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463826    GT:AD:DP:GQ:PL    0/1:9,10:19:99:309,0,318
2    197629531    rs113641244    TA    T    86.77    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=13;FS=0.0;HRun=9;HaplotypeScore=32.3655;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.093;QD=6.67;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461243    GT:AD:DP:GQ:PL    0/1:7,6:13:99:126,0,186
2    197636379    rs62185599    A    G    74.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.84;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435252    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:104,0,67
2    197664521    rs6434886    A    T    37.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263956    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
2    197672487    rs11378936    G    GT    251.94    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=24.9284;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=31.49;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342506    GT:AD:DP:GQ:PL    0/1:1,7:8:14.86:291,0,15
2    197737587    rs3795915    T    G    90.84    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.807;DB;DP=15;Dels=0.0;FS=5.74;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.718;QD=6.06;ReadPosRankSum=1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482051    GT:AD:DP:GQ:PL    0/1:11,4:15:99:121,0,404
2    197750042    rs365342    G    A    676.17    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=22.54;ReadPosRankSum=-0.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374738    GT:AD:DP:GQ:PL    0/1:9,20:30:99:706,0,284
2    197757042    .    A    C    328.04    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.079;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.088;QD=13.67;ReadPosRankSum=1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354764    GT:AD:DP:GQ:PL    0/1:10,14:24:99:358,0,350
2    197761824    rs332300    T    C    292.27    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=17;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.537;QD=17.19;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354764    GT:AD:DP:GQ:PL    0/1:7,10:17:99:322,0,228
2    197777589    rs12693800    C    T    335.20    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=27;Dels=0.0;FS=6.648;HRun=2;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=1.672;QD=12.41;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354764    GT:AD:DP:GQ:PL    0/1:14,13:27:99:365,0,457
2    197862903    rs2376209    T    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    197863214    rs1966703    C    T    124.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=9.56;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    0/1:7,6:13:99:154,0,257
2    197863851    rs4850742    C    T    451.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:484,36,0
2    197864996    rs6434897    A    C    321.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:355,27,0
2    197866470    rs12478175    T    A    2494.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2527,184,0
2    197872727    rs113476694    T    TTCTC    2022.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=81.2756;IndelType=I;MQ=47.4;MQ0=0;QD=77.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:4,22:26:78.27:2065,78,0
2    197873563    rs7565685    T    C    586.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422886    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:619,48,0
2    197878584    rs7584406    T    A    233.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:266,21,0
2    197943489    rs61752172    T    G    672.63    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.851;DB;DP=59;Dels=0.0;FS=5.593;HRun=1;HaplotypeScore=0.6651;MQ=59.22;MQ0=0;MQRankSum=-0.184;QD=11.4;ReadPosRankSum=-0.601;SNPEFF_AMINO_ACID_CHANGE=K205Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_197943427_197943538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422886    GT:AD:DP:GQ:PL    0/1:32,27:59:99:703,0,909
2    197947823    rs930372    A    C    73.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
2    197953372    rs67067011    TAAGTC    T    4162.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.0;HRun=0;HaplotypeScore=432.3195;IndelType=D;MQ=57.39;MQ0=1;QD=57.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473081    GT:AD:DP:GQ:PL    1/1:5,68:72:99:4162,208,0
2    197954780    rs4300850    A    G    996.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1029,75,0
2    197964689    rs56077856    G    A    2089.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.026;DB;DP=124;Dels=0.0;FS=1.754;HRun=1;HaplotypeScore=2.9984;MQ=59.33;MQ0=0;MQRankSum=0.889;QD=16.85;ReadPosRankSum=0.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    0/1:55,69:124:99:2120,0,1636
2    197986048    rs2697270    T    C    752.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443014    GT:AD:DP:GQ:PL    1/1:0,26:26:57.17:786,57,0
2    197989945    rs2579395    T    C    82.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443014    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
2    197990509    rs2579394    G    A    786.27    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.739;DB;DP=40;Dels=0.0;FS=7.586;HRun=0;HaplotypeScore=0.6651;MQ=59.42;MQ0=0;MQRankSum=-1.176;QD=19.66;ReadPosRankSum=-0.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443014    GT:AD:DP:GQ:PL    0/1:17,23:40:99:816,0,495
2    197990527    rs6434907    G    A    544.23    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=47;Dels=0.0;FS=4.028;HRun=1;HaplotypeScore=1.665;MQ=59.51;MQ0=0;MQRankSum=0.11;QD=11.58;ReadPosRankSum=0.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443014    GT:AD:DP:GQ:PL    0/1:25,22:47:99:574,0,833
2    197990909    rs2918628    G    A    91.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    198001319    rs3731569    A    G    443.15    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=34;Dels=0.0;FS=3.436;HRun=0;HaplotypeScore=1.4105;MQ=59.32;MQ0=0;MQRankSum=0.271;QD=13.03;ReadPosRankSum=-0.343;SNPEFF_AMINO_ACID_CHANGE=S14;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198001316_198001386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539527    GT:AD:DP:GQ:PL    0/1:16,18:34:99:473,0,470
2    198001443    rs2579387    C    T    211.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=15.08;ReadPosRankSum=0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    0/1:7,7:14:99:241,0,201
2    198001621    rs73051382    A    G    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
2    198011904    rs2249470    G    A    505.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:538,39,0
2    198011937    rs77715921    G    A    108.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.421;QD=13.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    0/1:4,4:8:98.33:138,0,98
2    198012407    rs11688574    G    T    122.21    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=11.11;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282272    GT:AD:DP:GQ:PL    0/1:6,5:11:99:152,0,218
2    198244598    rs7603828    G    A    336.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=36;Dels=0.0;FS=1.399;HRun=1;HaplotypeScore=0.7887;MQ=59.19;MQ0=0;MQRankSum=0.573;QD=9.36;ReadPosRankSum=0.782;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC010746.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399556    GT:AD:DP:GQ:PL    0/1:24,12:36:99:367,0,811
2    198257652    rs34965354    T    TA    678.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.706;DB;DP=31;FS=0.0;HRun=12;HaplotypeScore=207.248;IndelType=I;MQ=58.72;MQ0=0;MQRankSum=1.348;QD=21.89;ReadPosRankSum=-0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335508    GT:AD:DP:GQ:PL    1/1:2,29:31:60.28:721,60,0
2    198257795    rs4685    T    C    1797.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.7;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=V1219;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198257696_198257912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335508    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1831,138,0
2    198263146    rs16865262    T    C    991.66    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=63;Dels=0.0;FS=3.829;HRun=0;HaplotypeScore=0.9665;MQ=59.7;MQ0=0;MQRankSum=0.248;QD=15.74;ReadPosRankSum=-0.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462613    GT:AD:DP:GQ:PL    0/1:28,35:63:99:1022,0,812
2    198264903    rs80320260    AAAT    A    1242.22    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=4.985;DB;DP=62;FS=1.033;HRun=0;HaplotypeScore=249.2684;IndelType=D;MQ=56.33;MQ0=0;MQRankSum=-1.427;QD=20.04;ReadPosRankSum=-1.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462613    GT:AD:DP:GQ:PL    0/1:33,29:62:99:1281,0,1662
2    198265173    rs788017    T    A    1354.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462613    GT:AD:DP:GQ:PL    1/1:1,50:51:99:1388,123,0
2    198265526    rs788018    A    G    2441.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_AMINO_ACID_CHANGE=G877;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198265439_198265660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335508    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2474,181,0
2    198266943    rs788019    C    T    935.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335508    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:968,75,0
2    198267770    rs2914980    G    GAA    942.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=4;HaplotypeScore=44.2018;IndelType=I;MQ=61.07;MQ0=0;QD=47.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468925    GT:AD:DP:GQ:PL    1/1:1,19:20:57.19:984,57,0
2    198273347    rs77132083    T    C    233.71    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.07;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.155;QD=10.16;ReadPosRankSum=-0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470268    GT:AD:DP:GQ:PL    0/1:13,10:23:99:264,0,444
2    198281743    rs699318    T    C    827.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414174    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:861,69,0
2    198281776    rs699319    C    A    544.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414174    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:578,42,0
2    198283305    rs788023    T    C    853.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_AMINO_ACID_CHANGE=K141;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198283233_198283312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335508    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:886,69,0
2    198285554    rs2565161    C    G    86.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335508    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
2    198327314    rs3754822    G    A    640.47    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.562;DB;DP=38;Dels=0.0;FS=1.988;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.108;QD=16.85;ReadPosRankSum=0.356;SNPEFF_AMINO_ACID_CHANGE=K102;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198327263_198327455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263960    GT:AD:DP:GQ:PL    0/1:15,22:38:99:670,0,462
2    198355135    .    T    TTG    418.53    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=0;HaplotypeScore=46.009;IndelType=I;MQ=57.87;MQ0=0;QD=38.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430176    GT:AD:DP:GQ:PL    1/1:3,8:11:27.09:461,27,0
2    198355153    rs11682567    T    G    156.67    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.031;QD=14.24;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430176    GT:AD:DP:GQ:PL    0/1:5,6:11:99:187,0,170
2    198359027    rs7585486    G    C    508.31    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.56;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-1.426;QD=13.38;ReadPosRankSum=-0.138;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418022    GT:AD:DP:GQ:PL    0/1:21,17:38:99:538,0,737
2    198359315    .    CAGATAACTCAAACTTTTGATCATA    C    729.84    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.243;DP=16;FS=0.0;HRun=0;HaplotypeScore=338.6594;IndelType=D;MQ=50.04;MQ0=0;MQRankSum=-1.516;QD=45.62;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418022    GT:AD:DP:GQ:PL    0/1:6,10:16:99:769,0,909
2    198362018    rs8539    T    C    1782.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.67;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=K133;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198361892_198362116;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426480    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1815,138,0
2    198363504    rs1050347    A    G    1400.69    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9726;MQ=58.47;MQ0=0;MQRankSum=0.389;QD=18.43;ReadPosRankSum=-1.378;SNPEFF_AMINO_ACID_CHANGE=T23;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198363399_198363574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345042    GT:AD:DP:GQ:PL    0/1:26,50:76:99:1431,0,699
2    198365043    rs1116734    C    G    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426480    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
2    198365788    rs2305560    C    T    701.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.909;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.938;QD=17.55;ReadPosRankSum=0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426480    GT:AD:DP:GQ:PL    0/1:16,24:40:99:732,0,463
2    198498316    rs1979239    T    G    320.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295049    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
2    198508951    rs10497806    G    A    4101.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=59.61;MQ0=0;QD=35.05;SNPEFF_AMINO_ACID_CHANGE=L123;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198508882_198508996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295049    GT:AD:DP:GQ:PL    1/1:1,116:117:99:4101,298,0
2    198509058    rs16866940    C    T    593.78    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.079;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.307;QD=17.46;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295049    GT:AD:DP:GQ:PL    0/1:15,19:34:99:624,0,454
2    198511086    rs16866970    G    A    394.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.022;QD=17.94;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295049    GT:AD:DP:GQ:PL    0/1:10,12:22:99:425,0,341
2    198623751    rs73054817    A    G    325.92    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.628;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.43;MQ0=0;MQRankSum=-0.209;QD=8.81;ReadPosRankSum=-0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011997.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409845    GT:AD:DP:GQ:PL    0/1:20,17:37:99:356,0,529
2    198643631    rs700655    G    A    218.63    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=16.82;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011997.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409845    GT:AD:DP:GQ:PL    0/1:6,7:13:99:249,0,182
2    198950029    rs2228135    A    G    680.61    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=52;Dels=0.0;FS=1.13;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.603;QD=13.09;ReadPosRankSum=-2.141;SNPEFF_AMINO_ACID_CHANGE=Q498;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_198948536_198950956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437704    GT:AD:DP:GQ:PL    0/1:27,25:52:99:711,0,862
2    198950968    rs3821243    A    AT    684.73    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=59.1687;IndelType=I;MQ=59.58;MQ0=0;MQRankSum=-0.376;QD=23.61;ReadPosRankSum=-0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487695    GT:AD:DP:GQ:PL    0/1:11,18:28:99:724,0,371
2    198953816    rs3213867    G    A    647.84    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.235;DB;DP=43;Dels=0.02;FS=3.59;HRun=0;HaplotypeScore=9.338;MQ=58.95;MQ0=0;MQRankSum=-0.648;QD=14.72;ReadPosRankSum=-1.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487695    GT:AD:DP:GQ:PL    0/1:19,24:43:99:678,0,527
2    198966257    rs3732231    T    C    73.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428675    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
2    200173684    rs10153730    T    G    591.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SATB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260926    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:624,45,0
2    200245245    rs1348813    C    G    1208.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SATB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260926    GT:AD:DP:GQ:PL    1/1:0,31:31:93.28:1241,93,0
2    200298313    rs7596597    A    G    1444.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.98;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SATB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260926    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1477,108,0
2    200800493    rs6435039    A    G    71.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=54.65;MQ0=0;MQRankSum=1.067;QD=7.96;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYW5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354611    GT:AD:DP:GQ:PL    0/1:3,6:9:7.68:101,0,8
2    200808455    rs16832081    A    G    339.05    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.523;DB;DP=23;Dels=0.0;FS=6.628;HRun=0;HaplotypeScore=1.8997;MQ=58.99;MQ0=0;MQRankSum=0.031;QD=14.74;ReadPosRankSum=0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYW5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354611    GT:AD:DP:GQ:PL    0/1:11,12:23:99:369,0,374
2    200820505    rs281766    T    G    721.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=28.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491721    GT:AD:DP:GQ:PL    1/1:0,25:25:57.19:754,57,0
2    200872942    rs6414157    C    T    89.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.922;QD=11.16;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf47;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,4:8:99:119,0,144
2    200873144    rs113489455    AATACAAAAAAAACTTG    A    530.12    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=2.731;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=284.0313;IndelType=D;MQ=53.79;MQ0=0;MQRankSum=-1.991;QD=25.24;ReadPosRankSum=0.509;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf47;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,5:21:99:569,0,2778
2    201173620    rs3769481    A    G    76.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=12.7;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358677    GT:AD:DP:GQ:PL    0/1:2,4:6:66.83:106,0,67
2    201194279    rs3739119    C    A    388.14    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.058;DB;DP=34;Dels=0.0;FS=2.993;HRun=0;HaplotypeScore=2.6884;MQ=59.32;MQ0=0;MQRankSum=0.82;QD=11.42;ReadPosRankSum=0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358677    GT:AD:DP:GQ:PL    0/1:19,14:34:99:418,0,586
2    201254049    rs3820881    G    C    1414.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428692    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1447,117,0
2    201254171    rs4674015    A    G    133.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428692    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
2    201277011    rs11382442    CT    C    36.76    QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=48;FS=0.0;HRun=13;HaplotypeScore=231.4304;IndelType=D;MQ=59.03;MQ0=0;MQRankSum=0.277;QD=0.77;ReadPosRankSum=0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358677    GT:AD:DP:GQ:PL    0/1:37,8:48:75.79:76,0,842
2    201277181    rs6706953    T    C    619    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=59.05;MQ0=0;MQRankSum=-0.774;QD=12.63;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444012    GT:AD:DP:GQ:PL    0/1:27,22:49:99:649,0,945
2    201277321    rs2083119    C    T    76.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9313;MQ=57.39;MQ0=0;MQRankSum=0.358;QD=8.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444012    GT:AD:DP:GQ:PL    0/1:4,5:9:64.96:106,0,65
2    201334404    rs17532280    C    A    169.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438761    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
2    201334852    rs17532294    A    G    1398.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409397    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1432,108,0
2    201337359    rs2241805    G    C    121.69    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.34;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409397    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:152,0,25
2    201354937    .    AGGCGCGGT    A    1183.49    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=4.091;DP=41;FS=3.069;HRun=0;HaplotypeScore=324.8754;IndelType=D;MQ=47.48;MQ0=0;MQRankSum=-4.919;QD=28.87;ReadPosRankSum=1.003;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_201353675_201355339;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD18;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000359878    GT:AD:DP:GQ:PL    0/1:25,16:41:99:1223,0,2292
2    201355106    rs13018579    G    A    459.28    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.995;DB;DP=42;Dels=0.0;FS=7.702;HRun=0;HaplotypeScore=0.0;MQ=57.2;MQ0=0;MQRankSum=-0.091;QD=10.94;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=A333V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_201353675_201355339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359878    GT:AD:DP:GQ:PL    0/1:21,20:42:99:489,0,681
2    201371768    rs3739116    G    T    635.72    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=1.254;DB;DP=32;Dels=0.0;FS=1.661;HRun=0;HaplotypeScore=0.9993;MQ=57.05;MQ0=0;MQRankSum=-0.33;QD=19.87;ReadPosRankSum=1.518;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447556    GT:AD:DP:GQ:PL    0/1:11,20:32:99:666,0,291
2    201397569    rs842940    G    A    199.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357799    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
2    201397647    rs842939    A    C    1484.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357799    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1517,114,0
2    201437328    rs35987478    C    A    477.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=38;Dels=0.0;FS=1.323;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.507;QD=12.56;ReadPosRankSum=0.441;SNPEFF_AMINO_ACID_CHANGE=I753;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_201435773_201438700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357799    GT:AD:DP:GQ:PL    0/1:19,19:38:99:507,0,566
2    201437334    rs12052989    T    C    485.69    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=41;Dels=0.0;FS=1.303;HRun=3;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-2.14;QD=11.85;ReadPosRankSum=0.081;SNPEFF_AMINO_ACID_CHANGE=P755;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_201435773_201438700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357799    GT:AD:DP:GQ:PL    0/1:19,22:41:99:516,0,543
2    201440299    rs3764778    A    G    182.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.78;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=13.0;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357799    GT:AD:DP:GQ:PL    0/1:7,7:14:99:212,0,245
2    201464295    rs10179964    T    C    582.32    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.051;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.195;QD=16.18;ReadPosRankSum=1.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:14,22:36:99:612,0,386
2    201464565    rs12993144    C    T    77.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.47;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:107,0,66
2    201470233    rs112079712    ATTT    A    667.36    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.249;DB;DP=53;FS=4.236;HRun=15;HaplotypeScore=290.397;IndelType=D;MQ=57.34;MQ0=0;MQRankSum=-1.138;QD=12.59;ReadPosRankSum=1.539;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454629    GT:AD:DP:GQ:PL    0/1:21,23:53:99:706,0,782
2    201473674    rs2470902    G    A    243.16    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=3.118;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.472;QD=10.57;ReadPosRankSum=1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:14,9:23:99:273,0,408
2    201474237    rs4672858    A    G    580.11    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=32.23;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:2,16:18:28.28:610,0,28
2    201485572    rs4672865    A    G    368.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.995;DB;DP=28;Dels=0.0;FS=9.864;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.189;QD=13.16;ReadPosRankSum=-0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:14,14:28:99:399,0,402
2    201485649    rs4672866    T    G    350.57    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.169;DB;DP=25;Dels=0.0;FS=3.834;HRun=0;HaplotypeScore=0.8941;MQ=59.25;MQ0=0;MQRankSum=-1.169;QD=14.02;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:13,12:25:99:381,0,460
2    201485747    rs6761252    G    T    1027.85    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DB;DP=61;Dels=0.0;FS=3.369;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.715;QD=16.85;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:23,38:61:99:1058,0,734
2    201485830    rs6761375    G    A    1888.59    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=0.226;DB;DP=109;Dels=0.0;FS=11.245;HRun=0;HaplotypeScore=3.8999;MQ=59.79;MQ0=0;MQRankSum=-0.214;QD=17.33;ReadPosRankSum=0.494;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:44,65:109:99:1919,0,1252
2    201488413    rs4035120    A    G    478.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:512,39,0
2    201488435    rs3795968    T    C    292.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.854;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.618;QD=16.24;ReadPosRankSum=1.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    0/1:9,9:18:99:322,0,300
2    201488758    rs2348021    A    G    648.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.404;QD=30.87;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    1/1:1,20:21:32.47:681,32,0
2    201515939    rs868810    T    C    1099.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374700    GT:AD:DP:GQ:PL    1/1:0,37:37:93.25:1132,93,0
2    201533215    rs6730363    C    T    149.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=14.95;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260930    GT:AD:DP:GQ:PL    0/1:4,6:10:99:179,0,139
2    201534136    rs2715907    C    T    396.95    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.523;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=1.816;QD=17.26;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260930    GT:AD:DP:GQ:PL    0/1:11,12:23:99:427,0,383
2    201677454    rs2270281    C    T    127.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409226    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
2    201677791    rs2270280    T    C    558.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409226    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:591,45,0
2    201679931    rs12475785    G    T    241.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460660    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:274,21,0
2    201683695    rs2881880    T    C    801.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.81;MQ0=0;QD=28.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410110    GT:AD:DP:GQ:PL    1/1:0,28:28:66.21:835,66,0
2    201686122    rs3815501    T    C    2034.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.12;MQ0=0;QD=33.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410110    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2068,163,0
2    201686666    rs6705053    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410110    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    201719258    rs5837758    CA    C    49.10    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=17;FS=0.0;HRun=16;HaplotypeScore=103.1981;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=1.448;QD=2.89;ReadPosRankSum=1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321356    GT:AD:DP:GQ:PL    0/1:8,7:17:88.13:88,0,121
2    201724360    rs12465952    A    G    814.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481641    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:848,63,0
2    201874011    rs187316762    A    T    81.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM126B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418596    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
2    201928485    rs10206365    A    G    1345.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.58;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM126B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418596    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1378,111,0
2    202025131    rs2518142    G    A    1889.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFLAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309955    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1922,141,0
2    202073764    rs5837767    C    CT    108.72    PASS    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=37;FS=3.163;HRun=16;HaplotypeScore=343.4503;IndelType=I;MQ=41.81;MQ0=1;MQRankSum=-0.373;QD=2.86;ReadPosRankSum=1.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438843    GT:AD:DP:GQ:PL    0/1:30,6:37:99:148,0,136
2    202149416    .    ACG    A    332.94    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=94.651;IndelType=D;MQ=43.65;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286190    GT:AD:DP:GQ:PL    1/1:2,7:9:24.08:375,24,0
2    202151388    rs41309822    G    A    149.61    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.37;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286190    GT:AD:DP:GQ:PL    0/1:2,5:7:60.17:180,0,60
2    202151400    rs17860428    G    A    120.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286190    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:153,12,0
2    202249060    rs2540328    C    T    339.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332624    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:372,30,0
2    202252478    rs35620793    A    G    594.25    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.709;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=59.66;MQ0=0;MQRankSum=-0.271;QD=10.8;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=S454;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202252426_202252724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542292    GT:AD:DP:GQ:PL    0/1:35,20:55:99:624,0,1034
2    202252539    rs2244438    G    A    2388.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.32;SNPEFF_AMINO_ACID_CHANGE=T434I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202252426_202252724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542292    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2422,184,0
2    202252856    rs2540330    T    C    245.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=24.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458269    GT:AD:DP:GQ:PL    1/1:0,10:10:21.05:278,21,0
2    202252873    rs2540331    A    C    235.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458269    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:269,21,0
2    202260049    rs2256584    G    A    2511.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=H202;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202260037_202260167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542292    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2544,187,0
2    202272482    rs10689466    G    GT    124.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=9;HaplotypeScore=13.4746;IndelType=I;MQ=60.0;MQ0=0;QD=17.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458269    GT:AD:DP:GQ:PL    1/1:2,5:7:15.04:166,15,0
2    202342802    rs2243791    T    C    1985.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.99;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447698    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2018,150,0
2    202344179    rs34469362    GT    G    1180.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=10;HaplotypeScore=145.1233;IndelType=D;MQ=60.1;MQ0=0;QD=23.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447698    GT:AD:DP:GQ:PL    1/1:2,48:50:99:1223,141,0
2    202352649    rs2714481    A    G    583.70    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.894;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.558;QD=20.85;ReadPosRankSum=0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    0/1:10,18:28:99:614,0,327
2    202352733    rs965675    A    T    70.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.12;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,144
2    202357949    rs2714482    A    C    1485.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=C1039G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202355892_202359482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439140    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1519,120,0
2    202439790    .    A    AGAG    126.57    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DP=14;FS=0.0;HRun=0;HaplotypeScore=184.5183;IndelType=I;MQ=54.13;MQ0=0;MQRankSum=1.422;QD=9.04;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    0/1:6,5:14:84.25:166,0,84
2    202447009    rs13425990    C    T    745.30    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.851;DB;DP=59;Dels=0.0;FS=4.969;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=12.63;ReadPosRankSum=0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    0/1:31,28:59:99:775,0,878
2    202468136    rs10205247    T    A    415.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:449,33,0
2    202469118    rs4673203    G    A    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
2    202469361    rs12474206    C    T    3196.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_AMINO_ACID_CHANGE=T97;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202469334_202469420;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3230,244,0
2    202469472    rs7572583    A    G    1487.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1520,114,0
2    202469533    rs7560158    T    G    534.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286195    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:568,42,0
2    202491995    rs2540450    G    A    372.41    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.748;DB;DP=37;Dels=0.0;FS=1.696;HRun=4;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.789;QD=10.07;ReadPosRankSum=-0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM237;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432684    GT:AD:DP:GQ:PL    0/1:22,15:37:99:402,0,620
2    202501448    rs1208081    T    C    287.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.345;DB;DP=32;Dels=0.0;FS=1.702;HRun=1;HaplotypeScore=0.9734;MQ=59.28;MQ0=0;MQRankSum=0.669;QD=9.0;ReadPosRankSum=0.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM237;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463205    GT:AD:DP:GQ:PL    0/1:20,12:32:99:318,0,674
2    202505740    rs2540424    T    A    220.42    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.067;QD=22.04;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    0/1:3,7:10:52.47:250,0,52
2    202526353    rs12052740    T    C    226.16    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=25;Dels=0.0;FS=2.782;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.728;QD=9.05;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486212    GT:AD:DP:GQ:PL    0/1:17,8:25:99:256,0,552
2    202526366    rs62193397    G    A    394.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=21;Dels=0.0;FS=2.831;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.187;QD=18.8;ReadPosRankSum=0.261;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486212    GT:AD:DP:GQ:PL    0/1:7,14:21:99:425,0,232
2    202528830    rs74887695    A    AT    573.74    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.818;DB;DP=34;FS=5.449;HRun=5;HaplotypeScore=78.0789;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.095;QD=16.87;ReadPosRankSum=1.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486212    GT:AD:DP:GQ:PL    0/1:16,18:34:99:613,0,353
2    202531136    rs17384314    G    C    254.84    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.028;DB;DP=34;Dels=0.0;FS=7.61;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=7.5;ReadPosRankSum=-0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    0/1:21,13:34:99:285,0,695
2    202531264    rs62193398    T    C    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
2    202546113    rs1208073    T    C    799.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:833,63,0
2    202549666    rs1812932    A    C    81.74    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=46.53;MQ0=0;MQRankSum=-0.322;QD=10.22;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    0/1:3,5:8:94.26:112,0,94
2    202549975    rs28690266    C    T    89.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=-1.3;QD=12.84;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    0/1:3,4:7:99:120,0,101
2    202549982    rs28524596    T    A    52.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-1.537;QD=8.71;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    0/1:3,3:6:82.25:82,0,105
2    202557702    rs6725443    C    T    1163.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=36.35;SNPEFF_AMINO_ACID_CHANGE=G44S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202557631_202557752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1196,90,0
2    202557904    rs2540425    C    T    174.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
2    202558415    rs7590550    T    C    286.81    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=17.93;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315506    GT:AD:DP:GQ:PL    0/1:7,9:16:99:317,0,239
2    202566741    rs7603563    T    C    130.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
2    202569654    rs7598082    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    202569992    rs3219171    A    T    558.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:591,45,0
2    202570232    rs3219170    A    G    770.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:804,60,0
2    202571562    rs3219169    C    T    853.50    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.75;DB;DP=71;Dels=0.0;FS=0.967;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.331;QD=12.02;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:40,31:71:99:883,0,1124
2    202572806    rs2058662    C    G    968.92    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.237;DB;DP=69;Dels=0.0;FS=2.278;HRun=1;HaplotypeScore=1.8055;MQ=59.39;MQ0=0;MQRankSum=1.264;QD=14.04;ReadPosRankSum=0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:35,33:69:99:999,0,1140
2    202572925    rs2058661    C    T    405.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:438,33,0
2    202574825    rs1210940    C    T    618.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.63;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:651,48,0
2    202575717    rs61757691    T    C    978.55    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.706;DB;DP=67;Dels=0.0;FS=0.969;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.27;QD=14.61;ReadPosRankSum=0.796;SNPEFF_AMINO_ACID_CHANGE=I1373M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202575714_202575831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:34,33:67:99:1009,0,1092
2    202575821    rs3219168    G    A    1680.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.34;SNPEFF_AMINO_ACID_CHANGE=L1339;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202575714_202575831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1713,126,0
2    202575907    rs2882231    A    G    186.70    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=16.97;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:5,6:11:99:217,0,162
2    202575942    rs10200479    C    T    126.54    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=25.31;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:1,4:5:20.20:157,0,20
2    202580268    rs10469756    T    C    162.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489440    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
2    202580370    rs3219167    G    A    1054.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489440    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1088,81,0
2    202587653    rs7572898    C    T    213.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=15.23;ReadPosRankSum=1.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494017    GT:AD:DP:GQ:PL    0/1:7,7:14:99:243,0,244
2    202589257    rs3219163    T    C    306.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.905;QD=10.94;ReadPosRankSum=-0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483703    GT:AD:DP:GQ:PL    0/1:16,12:28:99:336,0,518
2    202593186    rs141560438    TA    T    1060.94    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.973;DB;DP=65;FS=0.0;HRun=1;HaplotypeScore=170.7279;IndelType=D;MQ=59.53;MQ0=0;MQRankSum=0.65;QD=16.32;ReadPosRankSum=0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483703    GT:AD:DP:GQ:PL    0/1:34,31:65:99:1100,0,1420
2    202594039    rs13029960    A    G    74.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.59;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:104,0,28
2    202598113    rs2276615    C    T    443.54    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=33;Dels=0.0;FS=3.256;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.378;QD=13.44;ReadPosRankSum=-0.378;SNPEFF_AMINO_ACID_CHANGE=V134;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202597999_202598161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457679    GT:AD:DP:GQ:PL    0/1:17,16:33:99:474,0,517
2    202606639    rs3731703    G    A    74.69    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=9.34;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:5,3:8:99:105,0,151
2    202608877    rs4673207    C    A    285.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.148;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.1567;MQ=58.71;MQ0=0;MQRankSum=0.883;QD=15.87;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:9,9:18:99:316,0,274
2    202614632    rs41308828    T    G    33.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.77;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:5,2:7:63.40:63,0,168
2    202619175    rs41308820    G    C    1089.29    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.006;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.448;QD=14.92;ReadPosRankSum=1.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    0/1:34,39:73:99:1119,0,996
2    202619413    .    TG    T    459.06    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=3.399;DP=29;FS=7.204;HRun=4;HaplotypeScore=77.3133;IndelType=D;MQ=60.74;MQ0=0;MQRankSum=-0.501;QD=15.83;ReadPosRankSum=-1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467448    GT:AD:DP:GQ:PL    0/1:13,16:29:99:498,0,342
2    202622509    rs28729117    T    C    410.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409632    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:444,33,0
2    202625615    rs3219156    C    T    1539.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=35.81;SNPEFF_AMINO_ACID_CHANGE=V368M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202625604_202626541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1573,117,0
2    202626625    rs2075194    A    C    494.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462747    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:527,39,0
2    202630424    rs1465320    G    A    1311.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1345,102,0
2    202630513    rs10194619    T    C    1130.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000496244    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1164,84,0
2    202633582    rs3219153    A    G    1114.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1148,87,0
2    202633725    rs10655798    T    TA    57.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=13;HaplotypeScore=110.4721;IndelType=I;MQ=43.65;MQ0=0;QD=6.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264276    GT:AD:DP:GQ:PL    1/1:2,6:9:11.89:99,12,0
2    202671381    rs2192672    C    G    291.52    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9276;MQ=60.0;MQ0=0;MQRankSum=-0.172;QD=9.72;ReadPosRankSum=0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CDK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260967    GT:AD:DP:GQ:PL    0/1:19,11:30:99:322,0,624
2    202672143    rs3214362    G    GA    555.94    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.279;DB;DP=44;FS=0.0;HRun=6;HaplotypeScore=108.7421;IndelType=I;MQ=60.22;MQ0=0;MQRankSum=1.598;QD=12.63;ReadPosRankSum=0.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CDK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260967    GT:AD:DP:GQ:PL    0/1:25,19:44:99:595,0,517
2    202688190    rs6435109    A    G    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CDK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260967    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
2    202688293    rs4675229    A    G    552.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CDK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260967    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:585,45,0
2    202712095    rs917958    A    C    1765.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CDK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260967    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1799,132,0
2    202939654    rs10221698    T    C    3087.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.753;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5781;MQ=60.0;MQ0=0;MQRankSum=1.554;QD=30.87;ReadPosRankSum=0.709;SNPEFF_AMINO_ACID_CHANGE=V42A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202939614_202939898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295844    GT:AD:DP:GQ:PL    1/1:2,98:100:99:3120,195,0
2    202955454    rs1568535    G    C    586.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295844    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:619,48,0
2    202964380    rs2882486    G    A    504.02    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.632;DB;DP=48;Dels=0.0;FS=1.113;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.587;QD=10.5;ReadPosRankSum=-0.632;SNPEFF_AMINO_ACID_CHANGE=E291;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202964336_202964519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541917    GT:AD:DP:GQ:PL    0/1:27,21:48:99:534,0,809
2    202964517    rs10197514    G    C    232.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=21;Dels=0.0;FS=4.887;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.816;QD=11.09;ReadPosRankSum=1.967;SNPEFF_AMINO_ACID_CHANGE=S337T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_202964336_202964519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541917    GT:AD:DP:GQ:PL    0/1:12,9:21:99:263,0,361
2    202964528    rs2350722    T    C    257.93    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=17;Dels=0.0;FS=5.129;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=15.17;ReadPosRankSum=-1.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295844    GT:AD:DP:GQ:PL    0/1:7,10:17:99:288,0,201
2    202964986    rs6755174    C    A    381.47    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.162;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.377;QD=14.13;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295844    GT:AD:DP:GQ:PL    0/1:10,17:27:99:411,0,251
2    202965222    rs6726731    A    G    64.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.0;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295844    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:95,0,68
2    202979615    .    T    TTGAA    1471.63    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.961;DP=58;FS=4.376;HRun=0;HaplotypeScore=231.6671;IndelType=I;MQ=60.12;MQ0=0;MQRankSum=-0.556;QD=25.37;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295844    GT:AD:DP:GQ:PL    0/1:36,20:58:99:1511,0,938
2    203029951    rs7582695    T    A    159.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498697    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
2    203051886    rs6722588    C    T    495.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498697    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:529,42,0
2    203052947    rs35468542    G    A    536.26    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=15.32;ReadPosRankSum=-1.436;SNPEFF_AMINO_ACID_CHANGE=E400K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_203052875_203052989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000498697    GT:AD:DP:GQ:PL    0/1:17,18:35:99:566,0,534
2    203058861    rs34823131    A    G    109.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=7.3;ReadPosRankSum=1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498697    GT:AD:DP:GQ:PL    0/1:10,5:15:99:139,0,369
2    203066048    rs12693962    G    T    160.16    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=6.64;HRun=1;HaplotypeScore=0.9958;MQ=58.2;MQ0=0;MQRankSum=0.212;QD=12.32;ReadPosRankSum=-2.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469462    GT:AD:DP:GQ:PL    0/1:5,8:13:99:190,0,174
2    203066050    rs12693963    G    C    205.05    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=14;Dels=0.0;FS=10.227;HRun=0;HaplotypeScore=0.9958;MQ=58.33;MQ0=0;MQRankSum=-1.867;QD=14.65;ReadPosRankSum=-3.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469462    GT:AD:DP:GQ:PL    0/1:5,9:14:99:235,0,173
2    203066286    rs4673234    G    T    1485.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8757;MQ=51.3;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC079354.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469462    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1519,117,0
2    203079307    rs3769817    T    C    731.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392244    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:764,60,0
2    203130632    rs148667174    G    C    390.28    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.88;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.776;QD=11.48;ReadPosRankSum=0.604;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467734    GT:AD:DP:GQ:PL    0/1:16,18:34:99:420,0,501
2    203139738    rs11397579    A    AC    273.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=14.7955;IndelType=I;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264279    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:315,21,0
2    203152355    rs7572505    G    A    433.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.25;DB;DP=36;Dels=0.0;FS=6.235;HRun=0;HaplotypeScore=0.9469;MQ=59.36;MQ0=0;MQRankSum=-0.283;QD=12.04;ReadPosRankSum=-1.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426814    GT:AD:DP:GQ:PL    0/1:20,16:36:99:464,0,614
2    203155015    rs11310035    GT    G    431.93    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=3.427;DB;DP=35;FS=5.059;HRun=4;HaplotypeScore=85.243;IndelType=D;MQ=60.31;MQ0=0;MQRankSum=-1.606;QD=12.34;ReadPosRankSum=0.878;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264279    GT:AD:DP:GQ:PL    0/1:19,16:35:99:471,0,693
2    203168173    rs1054446    C    T    515.80    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=4.016;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6439;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=15.17;ReadPosRankSum=-1.459;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433543    GT:AD:DP:GQ:PL    0/1:16,17:34:99:546,0,460
2    203378398    rs10714063    CT    C    374.76    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=3.847;DB;DP=35;FS=3.128;HRun=6;HaplotypeScore=87.5949;IndelType=D;MQ=60.31;MQ0=0;MQRankSum=1.535;QD=10.71;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374574    GT:AD:DP:GQ:PL    0/1:19,16:35:99:414,0,608
2    203378616    rs7575056    C    T    360.10    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=22.51;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374574    GT:AD:DP:GQ:PL    0/1:5,11:16:99:390,0,154
2    203384776    rs11390605    C    CTT    1095.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DB;DP=50;FS=0.0;HRun=12;HaplotypeScore=291.3324;IndelType=I;MQ=55.0;MQ0=0;MQRankSum=-0.619;QD=21.49;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374574    GT:AD:DP:GQ:PL    1/1:5,25:50:73.63:1138,74,0
2    203630019    rs57454651    T    G    97.09    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.79;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM117B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303116    GT:AD:DP:GQ:PL    0/1:4,5:9:99:127,0,108
2    203630102    .    C    CT    106.55    PASS    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.869;DP=46;FS=3.636;HRun=14;HaplotypeScore=220.5661;IndelType=I;MQ=57.97;MQ0=0;MQRankSum=0.349;QD=2.32;ReadPosRankSum=0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM117B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303116    GT:AD:DP:GQ:PL    0/1:34,8:46:99:146,0,413
2    203661779    rs6704822    A    G    376.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358299    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
2    203679306    rs72932767    T    C    81.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.33;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494560    GT:AD:DP:GQ:PL    0/1:2,3:5:64.17:112,0,64
2    203682304    rs72932772    C    G    244.97    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=24;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.67;QD=10.21;ReadPosRankSum=-1.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412210    GT:AD:DP:GQ:PL    0/1:15,9:24:99:275,0,535
2    203686234    rs143506102    GTTTCC    G    416.83    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=97.039;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=-1.733;QD=23.16;ReadPosRankSum=0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411681    GT:AD:DP:GQ:PL    0/1:10,8:18:99:456,0,691
2    203690387    rs1344959    G    A    698.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411681    GT:AD:DP:GQ:PL    1/1:0,22:23:57.18:731,57,0
2    203693559    rs4675296    C    G    1239.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421334    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1272,99,0
2    203747340    rs187539575    T    C    426.37    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.264;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.279;QD=18.54;ReadPosRankSum=-0.651;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463824    GT:AD:DP:GQ:PL    0/1:10,13:23:99:456,0,336
2    203747522    rs72934751    A    G    776.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.724;DB;DP=55;Dels=0.0;FS=4.65;HRun=0;HaplotypeScore=1.9727;MQ=60.0;MQ0=0;MQRankSum=0.409;QD=14.12;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463824    GT:AD:DP:GQ:PL    0/1:30,24:55:99:806,0,1003
2    203765756    rs35212307    T    C    340.38    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DB;DP=18;Dels=0.0;FS=4.708;HRun=0;HaplotypeScore=0.734;MQ=58.96;MQ0=0;MQRankSum=0.543;QD=18.91;ReadPosRankSum=-0.272;SNPEFF_AMINO_ACID_CHANGE=I75V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_203765748_203765842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261015    GT:AD:DP:GQ:PL    0/1:7,11:18:99:370,0,231
2    203806724    rs75869289    C    T    194.07    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.341;DB;DP=25;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.52;QD=7.76;ReadPosRankSum=1.013;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430899    GT:AD:DP:GQ:PL    0/1:14,11:25:99:224,0,441
2    203817257    .    A    AT    596.04    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.86;DP=67;FS=1.105;HRun=12;HaplotypeScore=241.9917;IndelType=I;MQ=58.14;MQ0=0;MQRankSum=0.68;QD=8.9;ReadPosRankSum=-0.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320443    GT:AD:DP:GQ:PL    0/1:36,28:67:99:635,0,430
2    203818575    rs6709618    A    G    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414857    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
2    203820275    rs3731695    T    C    76.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.77;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414857    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,108
2    203836507    rs72928608    G    C    120.92    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.18;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456821    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:151,0,25
2    203838961    rs72928610    T    C    150.54    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=13.69;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456821    GT:AD:DP:GQ:PL    0/1:5,6:11:99:181,0,168
2    203846817    rs72932557    A    T    558.72    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=3.614;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.446;QD=11.89;ReadPosRankSum=-0.848;SNPEFF_AMINO_ACID_CHANGE=Y469F;SNPEFF_CODON_CHANGE=tAc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_203846795_203847164;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414439    GT:AD:DP:GQ:PL    0/1:27,20:47:99:589,0,784
2    203848402    rs72932561    G    A    364.40    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.168;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.163;QD=9.34;ReadPosRankSum=-0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALS2CR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414439    GT:AD:DP:GQ:PL    0/1:22,17:39:99:394,0,733
2    203880992    rs2351524    T    C    202.29    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=16.86;ReadPosRankSum=-1.309;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478884    GT:AD:DP:GQ:PL    0/1:5,7:12:99:232,0,171
2    203921270    rs4673241    A    G    617.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:651,48,0
2    203933339    rs72934514    A    G    36.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.14;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    0/1:4,2:6:66.82:67,0,141
2    203990789    rs72934556    T    G    913.14    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=55;Dels=0.0;FS=1.141;HRun=1;HaplotypeScore=0.9789;MQ=59.66;MQ0=0;MQRankSum=-0.665;QD=16.6;ReadPosRankSum=-0.805;SNPEFF_AMINO_ACID_CHANGE=V957;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_203990683_203990816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    0/1:23,31:55:99:943,0,720
2    203991818    rs6715331    T    C    177.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:210,18,0
2    203995078    rs189753012    G    A    2709.72    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=4.753;DB;DP=175;Dels=0.0;FS=4.571;HRun=0;HaplotypeScore=0.6651;MQ=59.74;MQ0=0;MQRankSum=0.919;QD=15.48;ReadPosRankSum=-0.869;SNPEFF_AMINO_ACID_CHANGE=R1119H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_203995041_203995199;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    0/1:82,93:175:99:2740,0,2285
2    203996870    rs6748898    A    G    2193.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2226,163,0
2    204002809    rs10180815    A    C    466.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:499,36,0
2    204031137    rs72934601    G    A    72.88    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=14.58;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    0/1:1,4:5:30.97:103,0,31
2    204036545    rs11452833    C    CT    75.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=14;HaplotypeScore=64.1127;IndelType=I;MQ=49.17;MQ0=0;QD=10.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    1/1:1,6:7:14.68:117,15,0
2    204054834    rs62182253    G    A    116.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=23.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
2    204055916    .    T    A    238.98    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.667;DP=104;Dels=0.0;FS=1.03;HRun=0;HaplotypeScore=1.5661;MQ=45.55;MQ0=14;MQRankSum=-3.289;QD=2.3;ReadPosRankSum=3.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    0/1:80,24:104:99:269,0,2041
2    204062061    rs4675323    A    G    2540.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=I2330V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_204062025_204062114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449802    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2573,202,0
2    204067268    rs2060388    A    G    214.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340268    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
2    204090887    rs2351773    C    G    1969.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NBEAL1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2002,147,0
2    204111394    rs13015873    T    C    813.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.62;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:847,69,0
2    204111398    rs10586509    GTTAA    G    1174.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=247.385;IndelType=D;MQ=42.94;MQ0=0;QD=53.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    1/1:0,22:22:63.22:1216,63,0
2    204111443    rs6435176    A    G    1671.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=51.19;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1705,135,0
2    204111705    rs6751894    T    C    1186.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1219,105,0
2    204116660    rs3731694    A    T    398.39    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.145;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.564;QD=9.96;ReadPosRankSum=0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    0/1:25,15:40:99:428,0,775
2    204116690    rs2043449    C    T    1633.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=36.3;SNPEFF_AMINO_ACID_CHANGE=S97L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_204116690_204116832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1666,123,0
2    204116887    rs2351771    T    G    568.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:602,48,0
2    204143126    rs2043444    T    C    210.02    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=16.16;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    0/1:6,7:13:99:240,0,210
2    204154325    rs7593677    G    A    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443941    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
2    204154552    rs1048013    C    T    544.17    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=0.043;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.247;QD=9.89;ReadPosRankSum=0.196;SNPEFF_AMINO_ACID_CHANGE=L319F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_204154488_204154599;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421618    GT:AD:DP:GQ:PL    0/1:32,23:55:99:574,0,1003
2    204154677    rs114407963    A    T    277.71    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=2.113;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.944;QD=19.84;ReadPosRankSum=0.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443941    GT:AD:DP:GQ:PL    0/1:3,11:14:80.43:308,0,80
2    204154686    rs10170454    A    G    215.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443941    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:249,18,0
2    204157238    rs6727994    A    G    88.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356079    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
2    204246818    .    CTTTTTTT    C    435.49    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DP=16;FS=0.0;HRun=7;HaplotypeScore=107.3211;IndelType=D;MQ=53.85;MQ0=0;MQRankSum=-1.482;QD=27.22;ReadPosRankSum=0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431886    GT:AD:DP:GQ:PL    0/1:9,7:16:99:475,0,946
2    204261723    rs3731652    G    C    557.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261016    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:590,45,0
2    204305093    rs3814365    T    C    349.39    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.211;DB;DP=32;Dels=0.0;FS=3.637;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.496;QD=10.92;ReadPosRankSum=-0.853;SNPEFF_AMINO_ACID_CHANGE=P940;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_204298405_204306136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319170    GT:AD:DP:GQ:PL    0/1:17,15:32:99:379,0,474
2    204322298    rs2469953    T    C    1193.09    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.456;DB;DP=113;Dels=0.0;FS=4.629;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-1.56;QD=10.56;ReadPosRankSum=-0.537;SNPEFF_AMINO_ACID_CHANGE=K371;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_204322253_204322318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319170    GT:AD:DP:GQ:PL    0/1:58,55:113:99:1223,0,1643
2    204594058    rs3181109    C    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    204629421    rs1974996    C    T    755.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC125238.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390147    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:789,57,0
2    204732714    rs231775    A    G    459.44    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=11.78;ReadPosRankSum=-1.242;SNPEFF_AMINO_ACID_CHANGE=T17A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_204732666_204732774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTLA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295854    GT:AD:DP:GQ:PL    0/1:20,19:39:99:489,0,551
2    204732850    rs231776    A    G    258.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTLA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295854    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:291,24,0
2    204824283    rs10172036    T    G    398.04    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=24;Dels=0.0;FS=4.471;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.738;QD=16.58;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316386    GT:AD:DP:GQ:PL    0/1:11,13:24:99:428,0,308
2    205829991    rs236843    C    T    865.44    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=3.582;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.037;QD=15.74;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=A113;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_205829875_205830046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    0/1:26,29:55:99:895,0,770
2    205969023    rs2289024    A    C    367.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:401,33,0
2    205969220    rs2289025    G    A    703.03    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=85;Dels=0.0;FS=2.083;HRun=2;HaplotypeScore=1.7552;MQ=59.01;MQ0=0;MQRankSum=-1.779;QD=8.27;ReadPosRankSum=-1.43;SNPEFF_AMINO_ACID_CHANGE=R192K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_205969150_205969238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    0/1:55,30:85:99:733,0,1850
2    205986321    rs2289023    A    G    792    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=60;Dels=0.0;FS=9.307;HRun=1;HaplotypeScore=1.8237;MQ=60.0;MQ0=0;MQRankSum=0.192;QD=13.2;ReadPosRankSum=-0.355;SNPEFF_AMINO_ACID_CHANGE=Q271;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_205986315_205986673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    0/1:31,29:60:99:822,0,985
2    206036918    rs736320    C    T    464.54    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.289;DB;DP=43;Dels=0.0;FS=1.684;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.8;ReadPosRankSum=-0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    0/1:24,19:43:99:495,0,781
2    206050355    rs62172732    A    G    252.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
2    206364487    rs11687914    T    C    738.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:772,60,0
2    206364791    rs11683289    C    G    2121.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.674;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.29;MQ0=0;MQRankSum=0.323;QD=35.96;ReadPosRankSum=-1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    1/1:1,58:59:99:2155,126,0
2    206418032    rs6730102    G    A    1393.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9926;MQ=59.56;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349953    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1426,105,0
2    206562250    rs849558    C    T    8705.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272849    GT:AD:DP:GQ:PL    1/1:0,248:248:99:8705,662,0
2    206565500    rs3771051    C    T    388.89    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=29;Dels=0.0;FS=7.732;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.113;QD=13.41;ReadPosRankSum=-0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478013    GT:AD:DP:GQ:PL    0/1:15,14:29:99:419,0,515
2    206581033    rs849541    G    A    2482.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=R123K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_206580917_206581098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272849    GT:AD:DP:GQ:PL    1/1:0,75:76:99:2516,193,0
2    206590879    rs73064192    C    T    166.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=16;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=10.4;ReadPosRankSum=1.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477199    GT:AD:DP:GQ:PL    0/1:10,6:16:99:196,0,363
2    206592534    rs2241157    T    C    334.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477199    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:367,27,0
2    206605180    rs849575    T    G    662.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272849    GT:AD:DP:GQ:PL    1/1:0,21:21:60.14:695,60,0
2    206605223    rs77781102    T    C    472.61    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;MQRankSum=0.516;QD=10.99;ReadPosRankSum=0.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272849    GT:AD:DP:GQ:PL    0/1:23,20:43:99:503,0,669
2    206608039    rs849568    T    C    4190.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5655;MQ=59.27;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=V468;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_206607927_206608276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272849    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4191,334,0
2    206610502    rs849563    T    G    79.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.6;SNPEFF_AMINO_ACID_CHANGE=P558;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_206610470_206610614;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272849    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
2    206614646    rs10932123    T    G    65.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=7.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272849    GT:AD:DP:GQ:PL    0/1:5,4:9:95.20:95,0,178
2    206630073    rs35659576    A    AAC    309.12    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=42.042;IndelType=I;MQ=56.85;MQ0=0;MQRankSum=-0.289;QD=20.61;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460987    GT:AD:DP:GQ:PL    0/1:7,8:15:99:348,0,108
2    206631601    rs151261485    TG    T    305.70    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=3.216;DB;DP=41;FS=2.96;HRun=6;HaplotypeScore=105.0503;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=-0.253;QD=7.46;ReadPosRankSum=-0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460987    GT:AD:DP:GQ:PL    0/1:27,14:41:99:345,0,723
2    206884595    rs71410855    AT    A    2399.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;FS=0.0;HRun=9;HaplotypeScore=261.9174;IndelType=D;MQ=60.67;MQ0=0;QD=24.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233270    GT:AD:DP:GQ:PL    1/1:10,89:99:99:2442,267,0
2    206884792    rs817998    G    C    220.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233270    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:254,21,0
2    206911191    rs34828561    C    CA    1642.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=10;HaplotypeScore=160.0594;IndelType=I;MQ=61.19;MQ0=0;QD=26.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233270    GT:AD:DP:GQ:PL    1/1:7,53:61:99:1685,159,0
2    206911349    .    G    A    1493.30    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.004;DP=100;Dels=0.0;FS=3.618;HRun=1;HaplotypeScore=0.8667;MQ=59.77;MQ0=0;MQRankSum=1.191;QD=14.93;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233270    GT:AD:DP:GQ:PL    0/1:46,54:100:99:1523,0,1462
2    206921451    rs818009    G    A    2397.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9783;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=T145;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_206920922_206921667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233270    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2431,178,0
2    206921763    rs17220727    C    T    178.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.101;QD=12.77;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233270    GT:AD:DP:GQ:PL    0/1:7,7:14:99:209,0,210
2    206927850    rs17286674    G    A    678.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233270    GT:AD:DP:GQ:PL    1/1:0,19:19:57.15:712,57,0
2    206989170    rs2045858    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498520    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    206992371    rs4147726    G    A    324.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233190    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
2    206995010    rs4147725    A    G    308.97    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=2.103;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.705;QD=10.65;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233190    GT:AD:DP:GQ:PL    0/1:17,12:29:99:339,0,533
2    207003438    rs4147729    TA    T    217.97    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=11;FS=0.0;HRun=4;HaplotypeScore=25.6958;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=0.751;QD=19.82;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233190    GT:AD:DP:GQ:PL    0/1:3,8:11:14.95:257,0,15
2    207006676    rs1801318    T    C    370.66    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=0.894;DB;DP=41;Dels=0.0;FS=1.435;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.168;QD=9.04;ReadPosRankSum=0.371;SNPEFF_AMINO_ACID_CHANGE=R301;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207006665_207006793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457011    GT:AD:DP:GQ:PL    0/1:27,14:41:99:401,0,853
2    207006825    rs4147718    C    A    930.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233190    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:964,72,0
2    207008554    rs140829024    G    A    31.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.49;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454195    GT:AD:DP:GQ:PL    0/1:5,2:7:61.40:61,0,173
2    207008675    rs35409448    C    CT    2130.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=131.8102;IndelType=I;MQ=61.53;MQ0=0;QD=43.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454195    GT:AD:DP:GQ:PL    1/1:0,49:49:99:2173,147,0
2    207008763    rs1127566    C    A    3847.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.56;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=A206;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207008742_207008856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457011    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3847,277,0
2    207024886    rs113729178    G    GC    374.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=24.7248;IndelType=I;MQ=63.24;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236957    GT:AD:DP:GQ:PL    1/1:1,11:12:33.07:416,33,0
2    207025444    rs11689362    T    C    1413.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236957    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1447,105,0
2    207026471    rs3755229    C    T    141.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=28.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415904    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:174,15,0
2    207026491    rs3755228    C    T    134.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=49.17;MQ0=0;MQRankSum=0.198;QD=19.19;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415904    GT:AD:DP:GQ:PL    1/1:2,5:7:15.04:167,15,0
2    207027407    rs35430253    C    CT    3344.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.0;HRun=3;HaplotypeScore=180.194;IndelType=I;MQ=56.03;MQ0=0;QD=46.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415904    GT:AD:DP:GQ:PL    1/1:2,70:72:99:3345,211,0
2    207040777    rs112540540    T    C    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411719    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:71,0,66
2    207041053    rs3732083    T    C    2378.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=36.04;SNPEFF_AMINO_ACID_CHANGE=I307V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207040040_207041999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407325    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2412,181,0
2    207041441    rs3732082    G    A    594.30    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.135;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=14.86;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=D177;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207040040_207041999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407325    GT:AD:DP:GQ:PL    0/1:19,21:40:99:624,0,575
2    207041933    rs3755227    T    C    1860.97    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.206;DB;DP=117;Dels=0.0;FS=13.352;HRun=0;HaplotypeScore=3.4975;MQ=59.84;MQ0=0;MQRankSum=0.124;QD=15.91;ReadPosRankSum=0.69;SNPEFF_AMINO_ACID_CHANGE=E13;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207040040_207041999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407325    GT:AD:DP:GQ:PL    0/1:51,66:117:99:1891,0,1747
2    207169731    rs10932150    G    A    3985.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DB;DP=127;Dels=0.0;FS=4.051;HRun=4;HaplotypeScore=2.5747;MQ=59.52;MQ0=0;MQRankSum=-0.459;QD=31.38;ReadPosRankSum=1.474;SNPEFF_AMINO_ACID_CHANGE=R160K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207169441_207179148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDBF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374423    GT:AD:DP:GQ:PL    1/1:2,124:127:99:3986,283,0
2    207172627    rs7582864    A    G    5140.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.84;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=Q1125;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207169441_207179148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDBF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374423    GT:AD:DP:GQ:PL    1/1:0,148:148:99:5141,373,0
2    207174316    rs3732084    T    C    4860.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.83;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=S1688;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207169441_207179148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDBF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374423    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4860,367,0
2    207345826    rs3213811    G    A    103.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.81;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264377    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,102
2    207452151    rs11330184    GT    G    159.84    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.133;DB;DP=30;FS=0.0;HRun=9;HaplotypeScore=68.2979;IndelType=D;MQ=61.07;MQ0=0;MQRankSum=1.692;QD=5.33;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264377    GT:AD:DP:GQ:PL    0/1:20,10:30:99:199,0,432
2    207557965    rs114709725    G    A    1007    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.861;DB;DP=102;Dels=0.0;FS=3.162;HRun=0;HaplotypeScore=0.9734;MQ=59.77;MQ0=0;MQRankSum=1.266;QD=9.87;ReadPosRankSum=0.017;SNPEFF_AMINO_ACID_CHANGE=A305V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207557899_207558047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452335    GT:AD:DP:GQ:PL    0/1:62,40:102:99:1037,0,1981
2    207572341    rs16838641    T    G    72.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.1;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452335    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,102
2    207572396    rs10490747    C    A    37.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452335    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,110
2    207621759    rs1990849    A    G    1093.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9899;MQ=59.3;MQ0=0;QD=33.13;SNPEFF_AMINO_ACID_CHANGE=Y92;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207621622_207621764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDH1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374412    GT:AD:DP:GQ:PL    1/1:0,33:33:81.27:1126,81,0
2    207634958    rs41272659    G    A    48.50    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.441;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;MQRankSum=-0.819;QD=2.85;ReadPosRankSum=-1.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418289    GT:AD:DP:GQ:PL    0/1:14,3:17:78.49:78,0,442
2    207820276    rs13420911    G    A    402.11    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.03;MQ0=0;MQRankSum=0.661;QD=8.38;ReadPosRankSum=-1.355;SNPEFF_AMINO_ACID_CHANGE=M85I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207820187_207820288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272852    GT:AD:DP:GQ:PL    0/1:29,19:48:99:432,0,892
2    207824384    rs11903403    T    G    572.91    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.839;DB;DP=41;Dels=0.0;FS=1.242;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=13.97;ReadPosRankSum=-0.3;SNPEFF_AMINO_ACID_CHANGE=S134R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207824355_207824465;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272852    GT:AD:DP:GQ:PL    0/1:20,21:41:99:603,0,653
2    207824548    rs1453168    G    A    132.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272852    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
2    207825656    rs13397039    A    T    1156.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.942;DB;DP=91;Dels=0.0;FS=2.959;HRun=1;HaplotypeScore=0.9916;MQ=59.54;MQ0=0;MQRankSum=-0.782;QD=12.71;ReadPosRankSum=-1.223;SNPEFF_AMINO_ACID_CHANGE=A188;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207825576_207825666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272852    GT:AD:DP:GQ:PL    0/1:52,39:91:99:1187,0,1522
2    207833848    rs7582092    A    G    1548.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272852    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1582,126,0
2    207833983    rs7582305    A    G    475.24    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=37;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=12.84;ReadPosRankSum=-0.046;SNPEFF_AMINO_ACID_CHANGE=T316;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207833898_207834198;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272852    GT:AD:DP:GQ:PL    0/1:19,18:37:99:505,0,587
2    207945785    rs113821778    ATG    A    99.89    PASS    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=2.638;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=184.082;IndelType=D;MQ=57.42;MQ0=0;MQRankSum=-0.64;QD=2.56;ReadPosRankSum=0.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467833    GT:AD:DP:GQ:PL    0/1:31,8:39:99:139,0,1250
2    207946141    rs2287507    A    G    89.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=6.9;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309446    GT:AD:DP:GQ:PL    0/1:8,5:13:99:120,0,279
2    207946164    rs2287506    T    C    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309446    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,103
2    207988613    rs2700166    C    T    2462.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=L173;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_207988498_207989128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421199    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2495,196,0
2    208031992    rs1269424    T    A    124.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309446    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
2    208174631    rs13411919    T    C    525.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC009226.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401123    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:558,42,0
2    208174754    rs4675662    G    A    597.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC007879.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412387    GT:AD:DP:GQ:PL    1/1:1,19:20:51.14:630,51,0
2    208432346    rs3730276    A    G    57.72    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=5.77;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452474    GT:AD:DP:GQ:PL    0/1:7,3:10:87.71:88,0,256
2    208461621    rs141571316    TC    T    580.46    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=3.812;DB;DP=51;FS=1.172;HRun=2;HaplotypeScore=135.411;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=0.743;QD=11.38;ReadPosRankSum=0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236996    GT:AD:DP:GQ:PL    0/1:31,20:51:99:619,0,1192
2    208477852    rs2551949    G    A    3107.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_AMINO_ACID_CHANGE=T192I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_208477467_208478167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406927    GT:AD:DP:GQ:PL    1/1:0,85:85:99:3141,229,0
2    208477956    rs2709416    C    T    2575.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=Q157;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_208477467_208478167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406927    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2608,193,0
2    208478055    rs17520056    A    G    688.38    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=59;Dels=0.0;FS=3.853;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.826;QD=11.67;ReadPosRankSum=-0.363;SNPEFF_AMINO_ACID_CHANGE=T124;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_208477467_208478167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406927    GT:AD:DP:GQ:PL    0/1:35,24:59:99:718,0,1164
2    208489101    rs4234080    C    A    554.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.725;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.309;QD=11.55;ReadPosRankSum=1.746;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471128    GT:AD:DP:GQ:PL    0/1:27,21:48:99:585,0,804
2    208606875    rs71896412    CA    C    55.75    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=23;FS=0.0;HRun=17;HaplotypeScore=153.2245;IndelType=D;MQ=51.67;MQ0=0;MQRankSum=-0.684;QD=2.32;ReadPosRankSum=0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295414    GT:AD:DP:GQ:PL    0/1:12,9:23:94.78:95,0,133
2    208633413    rs4675711    T    C    148.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=24.68;SNPEFF_AMINO_ACID_CHANGE=L17;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_208627310_208633718;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295417    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:181,15,0
2    208693261    rs720632    C    G    162.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.032;DB;DP=24;Dels=0.0;FS=4.586;HRun=1;HaplotypeScore=1.7653;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=6.75;ReadPosRankSum=-0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427836    GT:AD:DP:GQ:PL    0/1:16,8:24:99:192,0,528
2    208693307    rs720631    T    C    43.03    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=5.38;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427836    GT:AD:DP:GQ:PL    0/1:5,3:8:73.02:73,0,165
2    208811097    rs10932215    C    T    3287.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=K562;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_208811091_208811236;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389247    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3288,247,0
2    208811284    rs10932216    C    T    731.94    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.73;DB;DP=49;Dels=0.0;FS=1.544;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.59;QD=14.94;ReadPosRankSum=0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389247    GT:AD:DP:GQ:PL    0/1:25,24:49:99:762,0,772
2    208841964    rs4441448    A    G    1830.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=N319;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_208841375_208842310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389247    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1863,150,0
2    208842394    rs2044971    A    G    526.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389247    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:560,45,0
2    208842881    rs144876886    ACGTGCAACATCAACGGAG    A    2236.93    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=5.038;DB;DP=45;FS=4.247;HRun=0;HaplotypeScore=673.8314;IndelType=D;MQ=48.97;MQ0=0;MQRankSum=-2.984;QD=49.71;ReadPosRankSum=-0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389247    GT:AD:DP:GQ:PL    0/1:24,21:45:99:2276,0,3317
2    208976955    rs10932241    A    C    181.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.15;MQ0=0;QD=25.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC093698.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412192    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:215,18,0
2    208977135    rs35960349    A    G    149.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.78;MQ0=1;QD=24.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC093698.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412192    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:182,15,0
2    208977323    rs11679871    A    G    240.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.83;MQ0=0;QD=26.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC093698.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412192    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:273,21,0
2    208977362    rs34126491    C    A    125.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.88;MQ0=0;QD=25.19;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC093698.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412192    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
2    208977388    rs11679917    A    G    131.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.72;MQ0=0;QD=26.21;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC093698.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412192    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
2    208977402    rs55999272    A    G    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.04;MQ0=0;QD=12.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC093698.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412192    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
2    208986385    rs2305429    A    G    1132.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=31.47;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264376    GT:AD:DP:GQ:PL    1/1:0,36:36:93.28:1166,93,0
2    208986637    rs2305430    T    C    3698.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=31.88;SNPEFF_AMINO_ACID_CHANGE=R95;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_208986331_208986669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264376    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3699,274,0
2    208986839    rs1470826    A    G    114.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264376    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:147,12,0
2    208989037    rs2242074    A    G    489.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.26;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=Y17;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_208988836_208989078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264376    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:522,42,0
2    208994697    rs2242071    C    T    595.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=37.23;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282141    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:629,48,0
2    209007559    rs796287    T    G    4006.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.79;MQ0=0;QD=36.1;SNPEFF_AMINO_ACID_CHANGE=I111L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209007297_209007637;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260988    GT:AD:DP:GQ:PL    1/1:0,111:111:99:4007,295,0
2    209007786    rs1124651    A    G    205.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260988    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:238,18,0
2    209010558    rs2854723    A    G    1724.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.18;MQ0=0;QD=28.27;SNPEFF_AMINO_ACID_CHANGE=P64;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209010498_209010740;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260988    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1758,147,0
2    209010891    rs2289917    G    A    538.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_209010836_209010892;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260988    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:572,42,0
2    209030572    rs6721025    A    G    1435.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341287    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1469,108,0
2    209032933    rs12694099    A    T    585.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423952    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:618,48,0
2    209033138    rs7589065    C    T    754.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_AMINO_ACID_CHANGE=R104K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209033106_209033219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451342    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:788,60,0
2    209033173    rs7562540    A    G    377.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=37.7;SNPEFF_AMINO_ACID_CHANGE=S92;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209033106_209033219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451342    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
2    209035485    rs6435420    T    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423952    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    209035658    rs6748431    C    T    2618.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423952    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2651,199,0
2    209035849    rs4292037    A    C    830.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.8;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=30.77;ReadPosRankSum=-1.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341287    GT:AD:DP:GQ:PL    1/1:1,26:27:30.47:864,30,0
2    209036605    rs10932244    T    C    2237.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=38.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341287    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2270,169,0
2    209036712    rs10804166    T    C    5926.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.755;MQ=59.35;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=S133G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209036712_209036799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451346    GT:AD:DP:GQ:PL    1/1:0,177:177:99:5926,442,0
2    209036778    rs6435421    A    G    4250.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6583;MQ=59.31;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=C111R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209036712_209036799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451346    GT:AD:DP:GQ:PL    1/1:1,133:135:99:4250,325,0
2    209037005    rs7564942    T    C    76.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341287    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
2    209045657    rs10208685    T    C    402.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449053    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:435,33,0
2    209045839    rs56342568    T    C    372.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449053    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:406,30,0
2    209049840    rs10804167    C    T    474.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341287    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:507,39,0
2    209101905    rs67780981    GA    G    198.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=27.2812;IndelType=D;MQ=61.07;MQ0=0;QD=19.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345146    GT:AD:DP:GQ:PL    1/1:0,9:10:29.03:240,29,0
2    209138946    rs6705163    C    T    550.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:583,42,0
2    209153256    rs4673390    T    C    79.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422495    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
2    209163556    rs7569723    C    T    783.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:816,63,0
2    209165487    rs6755550    A    T    254.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
2    209168853    rs893256    C    T    1512.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=36.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477200    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1545,114,0
2    209176807    rs58958114    T    G    82.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
2    209184844    rs934712    A    G    171.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=19.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:1,8:9:15.05:204,15,0
2    209184980    rs10932258    G    A    2730.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.69;MQ0=0;QD=36.9;SNPEFF_AMINO_ACID_CHANGE=S272N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209184976_209185083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392200    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2764,205,0
2    209184999    rs10932259    C    T    3154.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.28;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=P278;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209184976_209185083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392200    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3188,244,0
2    209189442    rs7355562    T    C    110.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:143,12,0
2    209189912    rs893255    A    G    356.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:390,30,0
2    209190330    rs2363468    T    C    1969.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8835;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=29.84;ReadPosRankSum=1.412;SNPEFF_AMINO_ACID_CHANGE=L508S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209189994_209191153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392200    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2003,128,0
2    209190519    rs893254    A    T    1693.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_AMINO_ACID_CHANGE=Q571L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209189994_209191153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392200    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1727,129,0
2    209190528    rs893253    C    G    1749.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_AMINO_ACID_CHANGE=T574S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209189994_209191153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392200    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1783,132,0
2    209191082    rs1529979    C    A    1414.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=Q1127K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209189994_209191153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452564    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1448,111,0
2    209191099    rs1529978    T    C    1434.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.46;MQ0=0;QD=33.37;SNPEFF_AMINO_ACID_CHANGE=N1132;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209189994_209191153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452564    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1468,114,0
2    209193185    rs976247    C    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    209194696    rs1437414    G    C    669.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=39.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443896    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:702,51,0
2    209195099    rs1866045    G    A    1884.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.873;MQ=58.67;MQ0=0;QD=38.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443896    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1917,144,0
2    209195133    rs12694109    T    C    2413.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443896    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2446,190,0
2    209195491    rs112938452    G    GAGA    1800.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=124.2464;IndelType=I;MQ=46.54;MQ0=0;QD=58.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443896    GT:AD:DP:GQ:PL    1/1:3,26:31:84.29:1843,84,0
2    209195645    rs1866044    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    209199945    rs2363469    A    G    2102.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2136,166,0
2    209200394    rs6718402    A    C    283.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:316,24,0
2    209201054    rs6744236    T    C    316.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452564    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:349,30,0
2    209201739    rs7596571    T    C    257.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452564    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:291,24,0
2    209203122    rs4675756    C    G    160.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452564    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
2    209209827    rs2304544    G    A    988.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,32:32:75.22:1021,75,0
2    209209997    rs2043718    C    T    241.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
2    209212707    rs2304545    G    A    1350.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=T1778;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209212583_209212747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1384,102,0
2    209214574    rs1561240    G    A    214.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
2    209214770    rs2118297    A    G    2251.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=T1799;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209214748_209214807;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2285,172,0
2    209215448    rs994696    A    G    1084.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,33:34:84.25:1117,84,0
2    209215586    rs994697    A    G    2049.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.82;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=E1842;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209215495_209215671;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2082,165,0
2    209219049    rs6435452    T    A    205    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
2    209219190    rs6435453    A    G    740.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:774,60,0
2    209220157    rs10208191    G    T    659.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=36.63;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTH2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413482    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:692,51,0
2    209220238    rs10208295    G    C    78.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTH2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413482    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
2    209224578    rs4675759    A    G    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
2    209224641    rs4675760    T    A    169.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
2    209224874    rs11357589    CA    C    2799.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.0;HRun=2;HaplotypeScore=211.8163;IndelType=D;MQ=60.17;MQ0=0;QD=37.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2841,220,0
2    209225223    rs11693993    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIKFYVE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264380    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
2    209293168    rs962595    C    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTH2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272847    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
2    209315573    rs1370371    G    A    1216.85    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.43;MQ0=0;MQRankSum=0.395;QD=15.8;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTH2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272847    GT:AD:DP:GQ:PL    0/1:40,37:77:99:1247,0,1223
2    209345666    rs1377907    T    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTH2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272847    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    209345944    rs68044812    CT    C    55.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=16;FS=0.0;HRun=17;HaplotypeScore=138.3823;IndelType=D;MQ=48.92;MQ0=0;MQRankSum=0.747;QD=3.49;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTH2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272847    GT:AD:DP:GQ:PL    0/1:7,8:16:0.45:93,0,0
2    209353656    rs112662846    GT    G    88.22    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=37.4321;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=8.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTH2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272847    GT:AD:DP:GQ:PL    0/1:4,6:10:76.53:127,0,77
2    209358027    rs3820900    C    T    157.52    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=4.38;ReadPosRankSum=-0.602;SNPEFF_AMINO_ACID_CHANGE=N432;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_209357989_209359231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTH2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272847    GT:AD:DP:GQ:PL    0/1:26,10:36:99:188,0,884
2    210010203    rs113896177    A    G    43.30    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.96;MQ0=1;MQRankSum=-2.691;QD=2.41;ReadPosRankSum=-0.673;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC013409.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418459    GT:AD:DP:GQ:PL    0/1:13,4:18:73.30:73,0,372
2    210010241    rs111258352    G    C    44.30    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.404;DB;DP=17;Dels=0.0;FS=2.933;HRun=0;HaplotypeScore=0.0;MQ=54.6;MQ0=1;MQRankSum=-2.691;QD=2.61;ReadPosRankSum=0.538;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC013409.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418459    GT:AD:DP:GQ:PL    0/1:13,4:17:74.29:74,0,407
2    210517785    rs2254169    C    T    296.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199940    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:330,24,0
2    210517915    rs2271252    T    C    289.62    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=7.83;ReadPosRankSum=0.99;SNPEFF_AMINO_ACID_CHANGE=D7;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_210517866_210518156;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000199940    GT:AD:DP:GQ:PL    0/1:25,12:37:99:320,0,703
2    210555264    rs3768813    A    G    1109.91    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.834;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.798;QD=19.47;ReadPosRankSum=-0.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199940    GT:AD:DP:GQ:PL    0/1:18,39:57:99:1140,0,603
2    210555776    rs3768812    C    T    78.36    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=11.19;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199940    GT:AD:DP:GQ:PL    0/1:2,5:7:68.41:108,0,68
2    210557380    rs6720659    C    T    660.32    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=2.992;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=-0.166;QD=10.82;ReadPosRankSum=0.418;SNPEFF_AMINO_ACID_CHANGE=H158;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_210557361_210561074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447185    GT:AD:DP:GQ:PL    0/1:35,26:61:99:690,0,966
2    210557542    rs741007    G    A    1082.30    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=3.81;DB;DP=80;Dels=0.0;FS=1.832;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.409;QD=13.53;ReadPosRankSum=1.103;SNPEFF_AMINO_ACID_CHANGE=T212;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_210557361_210561074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447185    GT:AD:DP:GQ:PL    0/1:42,38:80:99:1112,0,1212
2    210558162    rs741006    G    A    713.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.766;DB;DP=60;Dels=0.0;FS=3.591;HRun=3;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.357;QD=11.89;ReadPosRankSum=-1.054;SNPEFF_AMINO_ACID_CHANGE=R419K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_210557361_210561074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447185    GT:AD:DP:GQ:PL    0/1:30,30:60:99:744,0,1023
2    210559438    .    C    T    784.08    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DP=63;Dels=0.0;FS=2.562;HRun=0;HaplotypeScore=4.7451;MQ=59.27;MQ0=0;MQRankSum=-0.201;QD=12.45;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=P844;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_210557361_210561074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447185    GT:AD:DP:GQ:PL    0/1:27,36:63:99:814,0,784
2    210559960    rs2239672    G    T    422.21    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DB;DP=52;Dels=0.0;FS=1.181;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.457;QD=8.12;ReadPosRankSum=0.763;SNPEFF_AMINO_ACID_CHANGE=V1018;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_210557361_210561074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447185    GT:AD:DP:GQ:PL    0/1:36,16:52:99:452,0,1108
2    210561533    rs3217099    C    CAGA    1367.64    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.687;DB;DP=47;FS=6.439;HRun=0;HaplotypeScore=152.179;IndelType=I;MQ=53.52;MQ0=0;MQRankSum=-0.718;QD=29.1;ReadPosRankSum=0.986;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445941    GT:AD:DP:GQ:PL    0/1:24,23:47:99:1407,0,836
2    210561928    rs5838180    C    CT    125.60    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;FS=0.0;HRun=6;HaplotypeScore=17.2766;IndelType=I;MQ=61.53;MQ0=0;MQRankSum=0.198;QD=17.94;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445941    GT:AD:DP:GQ:PL    0/1:2,5:7:40.17:165,0,40
2    210569459    rs12619409    G    A    395.36    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.415;QD=11.98;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199940    GT:AD:DP:GQ:PL    0/1:18,15:33:99:425,0,613
2    210588500    rs2284359    A    C    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199940    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
2    210594540    rs4673486    A    G    126.75    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.52;MQ0=0;MQRankSum=-0.648;QD=7.92;ReadPosRankSum=1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199940    GT:AD:DP:GQ:PL    0/1:9,7:16:99:157,0,315
2    210594717    rs11389149    C    CT    121.02    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=14;FS=3.123;HRun=5;HaplotypeScore=111.1726;IndelType=I;MQ=55.69;MQ0=0;MQRankSum=0.4;QD=8.64;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475600    GT:AD:DP:GQ:PL    0/1:9,5:14:70.15:160,0,70
2    210594721    .    T    TAA    302.53    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.77;DP=15;FS=3.136;HRun=0;HaplotypeScore=107.3874;IndelType=I;MQ=55.99;MQ0=0;MQRankSum=-0.295;QD=20.17;ReadPosRankSum=-0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475600    GT:AD:DP:GQ:PL    0/1:6,7:15:99:342,0,202
2    210594768    rs7594601    T    C    106.31    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;MQRankSum=0.143;QD=9.66;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475600    GT:AD:DP:GQ:PL    0/1:6,5:11:99:136,0,191
2    210650504    rs57637604    A    G    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272845    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
2    210654225    rs35337581    C    T    1545.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.518;DB;DP=110;Dels=0.0;FS=5.309;HRun=0;HaplotypeScore=1.8136;MQ=59.58;MQ0=0;MQRankSum=-1.87;QD=14.05;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272845    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1576,0,2103
2    210678691    rs2159745    T    G    403.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272845    GT:AD:DP:GQ:PL    1/1:0,12:12:36.07:436,36,0
2    210745681    rs2370838    C    A    2744.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272845    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2778,202,0
2    210786137    rs9288415    G    A    403.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272845    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:437,33,0
2    210843383    rs2075117    G    A    80.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=8.01;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Q2952;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_210843253_210843432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272845    GT:AD:DP:GQ:PL    0/1:6,4:10:99:110,0,203
2    210846867    rs2723222    A    G    2242.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272845    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2275,166,0
2    210874246    rs3738934    T    C    871.16    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.56;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.55;MQ0=0;MQRankSum=-0.469;QD=17.08;ReadPosRankSum=1.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354506    GT:AD:DP:GQ:PL    0/1:21,30:51:99:901,0,703
2    210880492    rs2723211    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281772    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    210880893    rs7570090    C    T    285.32    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.127;DB;DP=31;Dels=0.0;FS=1.562;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.839;QD=9.2;ReadPosRankSum=1.127;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281772    GT:AD:DP:GQ:PL    0/1:19,12:31:99:315,0,558
2    210882171    rs2075116    A    T    797.10    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=45;Dels=0.0;FS=1.65;HRun=2;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.605;QD=17.71;ReadPosRankSum=-0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281772    GT:AD:DP:GQ:PL    0/1:20,25:45:99:827,0,556
2    210889759    rs6435550    A    G    310.01    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9951;MQ=60.0;MQ0=0;MQRankSum=-1.557;QD=10.69;ReadPosRankSum=1.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354506    GT:AD:DP:GQ:PL    0/1:16,13:29:99:340,0,579
2    211060050    rs2286963    T    G    1004.08    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=1.696;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.917;QD=15.45;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=K333Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_211059935_211060062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233710    GT:AD:DP:GQ:PL    0/1:29,36:65:99:1034,0,846
2    211069438    rs263677    G    A    1224.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.32;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482502    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1258,93,0
2    211074909    rs3764913    T    C    889.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.489;DB;DP=84;Dels=0.0;FS=0.917;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.342;QD=10.59;ReadPosRankSum=-1.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233710    GT:AD:DP:GQ:PL    0/1:48,36:84:99:919,0,1471
2    211082539    rs72990900    G    A    129.08    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=56.09;MQ0=0;MQRankSum=0.387;QD=11.73;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482523    GT:AD:DP:GQ:PL    0/1:6,5:11:99:159,0,209
2    211162998    rs7592060    G    A    202.43    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.27;MQ0=0;MQRankSum=-0.225;QD=14.46;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341685    GT:AD:DP:GQ:PL    0/1:6,8:14:99:232,0,161
2    211163063    rs112894708    TAC    T    109.27    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.351;DB;DP=24;FS=3.854;HRun=0;HaplotypeScore=232.5042;IndelType=D;MQ=42.73;MQ0=1;MQRankSum=3.442;QD=4.05;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341685    GT:AD:DP:GQ:PL    0/1:10,9:24:99:148,0,280
2    211167132    rs2292300    A    T    155.62    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=14.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341685    GT:AD:DP:GQ:PL    0/1:4,7:11:99:186,0,106
2    211168181    rs35179660    T    TC    259.93    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=19.7074;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=25.99;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341685    GT:AD:DP:GQ:PL    0/1:3,7:10:95.86:299,0,96
2    211168346    rs12469767    A    C    76.51    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.3;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352451    GT:AD:DP:GQ:PL    0/1:1,4:5:29.19:106,0,29
2    211302651    rs16844452    T    A    200.09    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.024;DB;DP=26;Dels=0.0;FS=2.551;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.208;QD=7.7;ReadPosRankSum=-2.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448951    GT:AD:DP:GQ:PL    0/1:15,11:26:99:230,0,546
2    211302685    rs13420747    T    C    145.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=14.57;ReadPosRankSum=-0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448951    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,164
2    211305557    rs73069777    G    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233714    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:70,0,34
2    211306295    rs4673526    T    C    326.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233714    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
2    211306392    rs4673527    T    C    83.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233714    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
2    211319824    rs2287432    T    C    1195.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453956    GT:AD:DP:GQ:PL    1/1:0,36:36:90.30:1229,90,0
2    211320041    rs71395583    G    GAA    422.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=100.0044;IndelType=I;MQ=55.59;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233714    GT:AD:DP:GQ:PL    1/1:1,11:14:36.10:464,36,0
2    211340937    rs3214410    A    AT    151.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;FS=0.0;HRun=7;HaplotypeScore=20.1304;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=16.82;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233714    GT:AD:DP:GQ:PL    0/1:3,6:9:59.87:190,0,60
2    211341156    rs2287418    C    G    245.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=20;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.567;QD=12.29;ReadPosRankSum=-0.567;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_211341040_211341463;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443314    GT:AD:DP:GQ:PL    0/1:10,10:20:99:276,0,350
2    211341204    rs76670466    G    GC    452.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=48.6525;IndelType=I;MQ=60.0;MQ0=0;QD=41.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233714    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:495,33,0
2    211342502    rs17552879    G    A    199.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=20;Dels=0.0;FS=4.285;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.196;QD=9.99;ReadPosRankSum=-0.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417946    GT:AD:DP:GQ:PL    0/1:12,8:20:99:230,0,367
2    211370130    rs2370962    G    A    33.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.39;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417946    GT:AD:DP:GQ:PL    0/1:2,2:4:63.55:64,0,72
2    211421452    rs3835047    A    ATCT    1419.87    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.28;DB;DP=45;FS=9.06;HRun=0;HaplotypeScore=169.5583;IndelType=I;MQ=56.12;MQ0=0;MQRankSum=-1.025;QD=31.55;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=I5IF;SNPEFF_CODON_CHANGE=atc/aTCTtc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_2_211421443_211421583;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430249    GT:AD:DP:GQ:PL    0/1:21,21:45:99:1459,0,744
2    211444533    rs35833900    G    GGT    621.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.561;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=198.0703;IndelType=I;MQ=54.7;MQ0=0;MQRankSum=-1.214;QD=15.93;ReadPosRankSum=0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417946    GT:AD:DP:GQ:PL    1/1:22,13:39:24.88:663,25,0
2    211456637    rs1047883    A    G    720.77    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.81;DB;DP=49;Dels=0.0;FS=16.902;HRun=0;HaplotypeScore=1.9654;MQ=59.53;MQ0=0;MQRankSum=0.15;QD=14.71;ReadPosRankSum=-0.09;SNPEFF_AMINO_ACID_CHANGE=T344A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_211456555_211456693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:24,25:49:99:751,0,634
2    211456639    rs2229589    C    T    688.44    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=48;Dels=0.0;FS=16.902;HRun=0;HaplotypeScore=1.9654;MQ=59.52;MQ0=0;MQRankSum=-1.053;QD=14.34;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=T344;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_211456555_211456693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:23,25:48:99:718,0,675
2    211457779    rs113899268    A    G    269.51    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.094;QD=11.72;ReadPosRankSum=0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:14,9:23:99:300,0,506
2    211459105    rs113132447    C    A    33.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.74;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:4,3:7:63.18:63,0,147
2    211463986    rs6743156    G    A    189.30    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=17.21;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:5,6:11:99:219,0,109
2    211466828    rs112393887    C    G    92.01    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.22;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536125    GT:AD:DP:GQ:PL    0/1:5,4:9:99:122,0,181
2    211470086    rs2277909    T    C    275.03    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=13.75;ReadPosRankSum=0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:9,11:20:99:305,0,310
2    211473070    rs2287600    G    T    562.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.402;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.2434;MQ=58.95;MQ0=0;MQRankSum=0.106;QD=12.79;ReadPosRankSum=-1.756;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467353    GT:AD:DP:GQ:PL    0/1:20,24:44:99:593,0,570
2    211476695    rs67531750    CT    C    109.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.74;DB;DP=12;FS=0.0;HRun=13;HaplotypeScore=71.5003;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=0.555;QD=9.13;ReadPosRankSum=2.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:3,8:12:25.55:149,0,26
2    211481033    rs114764732    A    G    245.51    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.0;QD=15.34;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:7,9:16:99:276,0,205
2    211481257    rs2287599    C    G    733.72    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.236;DB;DP=51;Dels=0.0;FS=1.092;HRun=2;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=14.39;ReadPosRankSum=0.236;SNPEFF_AMINO_ACID_CHANGE=G442;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_211481147_211481265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451903    GT:AD:DP:GQ:PL    0/1:24,27:51:99:764,0,699
2    211513118    rs4673540    C    T    854.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497121    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:888,66,0
2    211514995    rs34449727    G    T    648.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497121    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:681,51,0
2    211521227    rs112160784    CT    C    60.19    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=30;FS=11.761;HRun=15;HaplotypeScore=176.8045;IndelType=D;MQ=48.54;MQ0=0;MQRankSum=1.733;QD=2.01;ReadPosRankSum=1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:14,14:30:23.23:99,0,23
2    211523457    rs6435580    C    T    653    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:686,51,0
2    211527827    rs71395590    GT    G    868.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=12;HaplotypeScore=140.4187;IndelType=D;MQ=60.7;MQ0=0;QD=18.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    1/1:5,40:46:99:911,119,0
2    211533070    rs10932347    A    G    1453.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1486,111,0
2    211540507    rs1047891    C    A    545.56    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.673;DB;DP=50;Dels=0.0;FS=1.093;HRun=1;HaplotypeScore=0.8321;MQ=59.54;MQ0=0;MQRankSum=0.07;QD=10.91;ReadPosRankSum=-0.631;SNPEFF_AMINO_ACID_CHANGE=T1406N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_211540452_211540564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:27,23:50:99:576,0,789
2    211542525    rs17832175    A    G    1002.26    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=89;Dels=0.0;FS=3.892;HRun=4;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.086;QD=11.26;ReadPosRankSum=-1.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233072    GT:AD:DP:GQ:PL    0/1:48,41:89:99:1032,0,1663
2    212251864    rs3748962    T    C    1385.19    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.338;DB;DP=99;Dels=0.0;FS=1.754;HRun=0;HaplotypeScore=0.9832;MQ=58.83;MQ0=0;MQRankSum=1.177;QD=13.99;ReadPosRankSum=2.226;SNPEFF_AMINO_ACID_CHANGE=V1049;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_212251578_212251875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436443    GT:AD:DP:GQ:PL    0/1:47,52:99:99:1415,0,1402
2    212252809    rs934607    G    A    1621.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1655,123,0
2    212252955    rs934606    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.65;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,72
2    212285103    rs2289086    T    C    134.60    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.656;QD=10.35;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:7,6:13:99:165,0,218
2    212285339    rs66965227    AAAAG    A    814.43    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=4.375;DB;DP=31;FS=3.78;HRun=0;HaplotypeScore=164.1425;IndelType=D;MQ=56.31;MQ0=0;MQRankSum=0.564;QD=26.27;ReadPosRankSum=0.894;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:14,17:31:99:853,0,787
2    212295875    rs6710946    C    T    639.76    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.698;DB;DP=46;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.221;QD=13.91;ReadPosRankSum=-0.926;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:21,25:46:99:670,0,591
2    212488870    rs3215298    G    GC    762.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=48.3972;IndelType=I;MQ=60.63;MQ0=0;QD=44.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:805,51,0
2    212495342    .    A    AT    1065.02    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.406;DP=56;FS=1.441;HRun=0;HaplotypeScore=150.166;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=0.704;QD=19.02;ReadPosRankSum=0.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:24,32:56:99:1104,0,791
2    212543924    rs4673628    A    G    475.93    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.478;DB;DP=30;Dels=0.0;FS=3.917;HRun=0;HaplotypeScore=1.9468;MQ=53.52;MQ0=0;MQRankSum=-0.312;QD=15.86;ReadPosRankSum=0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:14,16:30:99:506,0,325
2    212544024    rs10169970    G    A    90.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=-0.72;QD=15.0;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:2,4:6:60.70:120,0,61
2    212569879    rs10221746    T    C    69.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.64;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,108
2    212569983    rs6723705    G    A    724.96    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.28;MQ0=0;MQRankSum=-0.528;QD=22.65;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:10,22:32:99:755,0,318
2    212812060    rs839540    T    C    246.21    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.94;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:5,8:13:99:276,0,157
2    212812097    rs839541    T    C    371.45    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=0.355;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.388;QD=16.15;ReadPosRankSum=-0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342788    GT:AD:DP:GQ:PL    0/1:8,15:23:99:401,0,264
2    212989308    rs6738304    T    C    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459774    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
2    213886647    .    A    ATTTTATCT    3407.80    PASS    AC=2;AF=1.00;AN=2;DP=33;FS=0.0;HRun=0;HaplotypeScore=173.9321;IndelType=I;MQ=33.94;MQ0=0;QD=103.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342002    GT:AD:DP:GQ:PL    1/1:13,19:33:84.29:3408,84,0
2    213914343    rs2165444    C    T    506.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433134    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:540,39,0
2    214012405    rs6738070    A    C    2738.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DB;DP=105;Dels=0.04;FS=3.979;HRun=0;HaplotypeScore=12.8232;MQ=59.58;MQ0=0;MQRankSum=-0.28;QD=24.89;ReadPosRankSum=-0.016;SNPEFF_AMINO_ACID_CHANGE=L62V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_214012096_214012536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442445    GT:AD:DP:GQ:PL    1/1:1,104:105:99:2771,229,0
2    214161849    rs1488988    C    T    74.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.85;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272898    GT:AD:DP:GQ:PL    0/1:2,3:5:61.03:104,0,61
2    214174767    rs10498003    C    T    741.29    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.667;DB;DP=55;Dels=0.0;FS=2.921;HRun=0;HaplotypeScore=0.9578;MQ=59.24;MQ0=0;MQRankSum=0.7;QD=13.48;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272898    GT:AD:DP:GQ:PL    0/1:29,26:55:99:771,0,879
2    214182100    rs10183630    A    T    539.83    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DB;DP=32;Dels=0.0;FS=8.272;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.113;QD=16.87;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272898    GT:AD:DP:GQ:PL    0/1:13,19:32:99:570,0,410
2    214228792    rs12469417    C    T    513.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272898    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:546,42,0
2    214228959    rs4146048    G    A    263.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414961    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:296,24,0
2    214261534    rs339815    T    C    316.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272898    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:350,30,0
2    215013801    rs3043764    G    GTATA    309.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=65.0203;IndelType=I;MQ=64.64;MQ0=0;MQRankSum=0.747;QD=34.44;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331683    GT:AD:DP:GQ:PL    1/1:4,5:9:2.08:348,2,0
2    215014212    rs6435816    A    G    88.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331683    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    215562577    rs10427252    G    A    1822    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ENSAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312710    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1855,141,0
2    215593233    rs5020511    T    C    37.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.35;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421162    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:67,0,31
2    215593851    rs2075623    G    C    60.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.04;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421162    GT:AD:DP:GQ:PL    0/1:3,3:6:90.22:90,0,106
2    215593871    rs2075622    T    G    70.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.62;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421162    GT:AD:DP:GQ:PL    0/1:1,3:4:29.73:100,0,30
2    215595440    rs3738887    T    A    39.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.97;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260947    GT:AD:DP:GQ:PL    0/1:3,2:5:69.83:70,0,111
2    215595765    rs6435849    C    G    323.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260947    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:357,27,0
2    215610313    rs6730040    G    T    217.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.791;QD=15.55;ReadPosRankSum=0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465841    GT:AD:DP:GQ:PL    0/1:7,7:14:99:248,0,180
2    215610740    rs1838803    A    T    287.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260947    GT:AD:DP:GQ:PL    1/1:0,12:12:30.07:320,30,0
2    215632256    rs2070093    A    G    1317.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_AMINO_ACID_CHANGE=H362;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_215632206_215632378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449967    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1351,105,0
2    215634232    rs6733785    A    G    58.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260947    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:91,9,0
2    215645135    rs3768707    A    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471787    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
2    215645464    rs2229571    C    G    807.89    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.121;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.445;QD=14.43;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=R234S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_215645284_215646233;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449967    GT:AD:DP:GQ:PL    0/1:25,31:56:99:838,0,858
2    215645545    rs2070096    C    G    901.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=60;Dels=0.0;FS=1.02;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.249;QD=15.03;ReadPosRankSum=0.113;SNPEFF_AMINO_ACID_CHANGE=T207;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_215645284_215646233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449967    GT:AD:DP:GQ:PL    0/1:24,36:60:99:932,0,666
2    215674090    rs35933323    T    G    91.51    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.528;QD=5.08;ReadPosRankSum=-0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260947    GT:AD:DP:GQ:PL    0/1:13,5:18:99:122,0,384
2    215712375    rs1446361    G    A    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC016708.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457497    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    215797332    rs17426207    C    T    428.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.504;QD=28.58;ReadPosRankSum=-1.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389661    GT:AD:DP:GQ:PL    1/1:1,14:15:36.10:462,36,0
2    215797527    rs10532785    AATTC    A    392.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=48.097;IndelType=D;MQ=67.91;MQ0=0;QD=43.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:434,27,0
2    215798724    rs943295    A    C    507.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:540,39,0
2    215802112    rs3738884    G    A    166.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
2    215811905    rs71428356    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
2    215812297    rs2274412    G    A    724.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:758,57,0
2    215820013    rs10498027    G    A    937.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.49;SNPEFF_AMINO_ACID_CHANGE=Y1784;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_215819926_215820085;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389661    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:970,72,0
2    215821214    rs35062977    GTAT    G    774.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=76.157;IndelType=D;MQ=56.6;MQ0=0;QD=43.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:1,17:18:51.17:816,51,0
2    215821580    rs17492577    T    C    618.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:651,48,0
2    215823334    rs956132    C    T    170.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
2    215823346    rs956133    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    215833415    rs4673925    A    G    2521.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,72:73:99:2554,187,0
2    215833622    rs6756540    G    T    832.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:866,72,0
2    215840414    rs17493319    C    A    669.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:703,51,0
2    215840829    rs7594021    A    G    438.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:472,36,0
2    215843949    rs7593044    T    C    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
2    215847177    rs4610055    C    A    453.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:487,39,0
2    215848674    rs71399166    G    GA    335.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=6;HaplotypeScore=18.3238;IndelType=I;MQ=61.07;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:377,30,0
2    215851246    rs7559069    A    G    888.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,25:26:69.23:922,69,0
2    215855780    rs4533467    G    A    1052.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,31:31:84.24:1086,84,0
2    215855897    rs1880134    T    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    215862383    rs1980844    G    A    2701.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.311;MQ=59.7;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2735,214,0
2    215862633    rs1326748    C    G    1085.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,32:32:81.27:1118,81,0
2    215862711    rs57145875    G    A    397.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:430,33,0
2    215865849    rs2049361    G    A    152.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:185,15,0
2    215866574    rs10169991    C    G    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    215872334    rs940279    G    A    771.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:804,63,0
2    215874918    rs4673929    T    C    343.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:377,27,0
2    215874965    rs6733264    G    T    706.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:740,54,0
2    215875251    rs1409607    A    T    363.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:397,30,0
2    215876166    rs7560008    A    T    928.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=S459T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_215876163_215876373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389661    GT:AD:DP:GQ:PL    1/1:0,30:30:78.23:962,78,0
2    215880108    rs6753310    C    T    138.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:171,12,0
2    215882529    rs6435868    G    A    113.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
2    215883988    rs1403835    T    C    382.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:416,33,0
2    215890253    rs2177424    C    G    38.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
2    215890312    rs2177423    A    G    376.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.07;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:409,36,0
2    215890324    rs11413846    G    GT    317.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.401;DB;DP=13;FS=0.0;HRun=10;HaplotypeScore=128.2603;IndelType=I;MQ=35.57;MQ0=0;MQRankSum=-1.47;QD=24.43;ReadPosRankSum=0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:1,12:13:14.45:359,14,0
2    215890352    rs67593537    GTT    G    462.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=11;HaplotypeScore=148.1992;IndelType=D;MQ=43.49;MQ0=0;QD=27.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:4,13:17:48.11:505,48,0
2    215896316    rs4673935    A    G    113.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
2    215896349    rs4672744    T    G    169.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
2    215896352    rs4673936    A    G    163.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
2    215940242    rs6711179    T    C    1272.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=38.55;SNPEFF_AMINO_ACID_CHANGE=I88V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_215940215_215940340;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412081    GT:AD:DP:GQ:PL    1/1:0,33:33:96.31:1305,96,0
2    215976231    rs2948978    A    T    649.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;QD=27.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272895    GT:AD:DP:GQ:PL    1/1:0,24:24:66.15:682,66,0
2    216182769    rs4672766    A    T    293.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=26.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    1/1:0,11:11:33.03:327,33,0
2    216182770    rs75285060    C    T    181.87    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=0.354;QD=16.53;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    0/1:2,9:11:48.08:212,0,48
2    216184482    rs16853782    A    G    278.82    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.532;DB;DP=20;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.064;QD=13.94;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    0/1:11,9:20:99:309,0,350
2    216189825    rs3772077    A    G    108.87    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.55;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    0/1:3,4:7:92.61:139,0,93
2    216189845    rs3772078    A    G    107.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=11.94;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,175
2    216190654    rs7563206    C    T    309.89    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.454;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.07;MQ0=0;MQRankSum=-0.779;QD=12.4;ReadPosRankSum=-0.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    0/1:13,12:25:99:340,0,384
2    216190691    rs2177737    A    C    972.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    1/1:0,32:32:75.20:1005,75,0
2    216191515    rs6751557    C    T    906.97    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3302;MQ=59.27;MQ0=0;MQRankSum=-0.262;QD=14.4;ReadPosRankSum=0.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444305    GT:AD:DP:GQ:PL    0/1:35,28:63:99:937,0,997
2    216191533    rs78562722    C    T    1186.86    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.196;DB;DP=74;Dels=0.0;FS=8.483;HRun=0;HaplotypeScore=0.9933;MQ=59.38;MQ0=0;MQRankSum=-0.561;QD=16.04;ReadPosRankSum=0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444305    GT:AD:DP:GQ:PL    0/1:32,42:74:99:1217,0,1056
2    216197971    rs12995526    T    C    144.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=13.11;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    0/1:6,5:11:99:174,0,214
2    216199881    rs7594036    T    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    216200907    rs13002576    C    G    692.49    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.676;DB;DP=52;Dels=0.0;FS=3.736;HRun=0;HaplotypeScore=1.8317;MQ=59.56;MQ0=0;MQRankSum=0.102;QD=13.32;ReadPosRankSum=0.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427397    GT:AD:DP:GQ:PL    0/1:30,22:52:99:722,0,1065
2    216209303    rs12471482    T    C    84.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
2    216211712    rs10932609    A    T    530.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=37.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459796    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:563,42,0
2    216212279    rs4673992    G    C    1039.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;QD=34.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459796    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1073,81,0
2    216214492    rs10498036    T    G    715.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236959    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:748,54,0
2    216235089    rs1250209    C    T    1069.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.25;MQ0=0;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=V1960I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216235017_216235155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357867    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1102,81,0
2    216236532    rs10804241    G    A    43.01    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.93;QD=3.31;ReadPosRankSum=-1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438981    GT:AD:DP:GQ:PL    0/1:10,3:13:73.01:73,0,294
2    216237929    rs2289199    A    T    138.14    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.663;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.05;MQ0=0;MQRankSum=1.034;QD=11.51;ReadPosRankSum=1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474036    GT:AD:DP:GQ:PL    0/1:5,7:12:99:168,0,124
2    216240126    rs3214672    AAC    A    255.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;FS=3.802;HRun=0;HaplotypeScore=32.6764;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=28.4;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474036    GT:AD:DP:GQ:PL    0/1:2,7:9:82.90:295,0,83
2    216242917    rs1132741    T    A    465.80    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.053;DB;DP=42;Dels=0.0;FS=2.807;HRun=0;HaplotypeScore=0.9832;MQ=58.89;MQ0=0;MQRankSum=1.196;QD=11.09;ReadPosRankSum=-1.524;SNPEFF_AMINO_ACID_CHANGE=G1716;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216242898_216242985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356005    GT:AD:DP:GQ:PL    0/1:22,20:42:99:496,0,784
2    216243832    rs1250204    T    C    583.68    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=0.324;DB;DP=36;Dels=0.0;FS=6.582;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.051;QD=16.21;ReadPosRankSum=0.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480737    GT:AD:DP:GQ:PL    0/1:13,23:36:99:614,0,396
2    216245392    rs3732355    C    T    402.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.262;QD=16.78;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480737    GT:AD:DP:GQ:PL    0/1:12,12:24:99:433,0,366
2    216248305    rs1250203    G    T    212.48    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9886;MQ=60.0;MQ0=0;MQRankSum=-1.794;QD=13.28;ReadPosRankSum=1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:8,7:16:99:242,0,290
2    216248606    rs13018173    T    C    189.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-1.067;QD=23.71;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:2,6:8:61.21:220,0,61
2    216248707    rs3214671    TAA    T    330.49    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=1.844;DB;DP=25;FS=0.0;HRun=4;HaplotypeScore=84.0147;IndelType=D;MQ=58.83;MQ0=1;MQRankSum=0.498;QD=12.71;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:15,11:25:99:370,0,715
2    216249587    rs13652    C    T    488.81    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=42;Dels=0.0;FS=2.68;HRun=1;HaplotypeScore=0.9159;MQ=59.56;MQ0=0;MQRankSum=0.762;QD=11.64;ReadPosRankSum=-0.334;SNPEFF_AMINO_ACID_CHANGE=E1484;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216249583_216249699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336916    GT:AD:DP:GQ:PL    0/1:26,16:42:99:519,0,875
2    216249819    rs1250201    C    T    34.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.92;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:3,2:5:64.58:65,0,97
2    216251697    rs35343655    G    A    183.14    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.666;QD=20.35;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:2,7:9:23.69:213,0,24
2    216252756    rs2888354    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    216256615    rs6709607    T    C    585.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:619,45,0
2    216256707    rs10804242    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    216257949    rs113798880    GA    G    486.27    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=4.504;DB;DP=32;FS=0.0;HRun=1;HaplotypeScore=89.8097;IndelType=D;MQ=60.43;MQ0=0;MQRankSum=0.735;QD=15.2;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:17,15:32:99:525,0,608
2    216262621    rs6725958    A    C    384.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.327;DB;DP=30;Dels=0.0;FS=13.027;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=12.82;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:15,15:30:99:415,0,499
2    216262788    rs2577297    A    G    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
2    216263926    rs2692224    C    A    278.61    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=31;Dels=0.03;FS=2.614;HRun=2;HaplotypeScore=3.866;MQ=59.28;MQ0=0;MQRankSum=-0.529;QD=8.71;ReadPosRankSum=-1.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:18,13:31:99:309,0,628
2    216263938    rs3832178    C    CT    536.56    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=2.91;DB;DP=37;FS=4.263;HRun=1;HaplotypeScore=144.8446;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=-1.211;QD=14.5;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:21,15:37:99:576,0,602
2    216272819    rs7570208    C    G    780.05    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.879;DB;DP=59;Dels=0.0;FS=1.048;HRun=1;HaplotypeScore=1.9125;MQ=58.82;MQ0=0;MQRankSum=0.615;QD=13.22;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471193    GT:AD:DP:GQ:PL    0/1:30,29:59:99:810,0,853
2    216272900    rs2577301    T    G    1538.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=T817P;SNPEFF_CODON_CHANGE=Acg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216272831_216272920;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1572,120,0
2    216272907    rs7596677    A    T    500.43    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.314;DB;DP=43;Dels=0.0;FS=9.689;HRun=0;HaplotypeScore=2.2566;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=11.64;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=P814;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216272831_216272920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:23,19:43:99:530,0,786
2    216283958    rs3796123    T    A    348.73    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.568;DB;DP=38;Dels=0.0;FS=18.859;HRun=1;HaplotypeScore=0.9332;MQ=59.39;MQ0=0;MQRankSum=0.406;QD=9.18;ReadPosRankSum=1.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496542    GT:AD:DP:GQ:PL    0/1:26,12:38:99:379,0,767
2    216287093    rs1250248    A    G    452.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:485,36,0
2    216288841    rs56137176    T    C    1031.65    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.366;DB;DP=62;Dels=0.0;FS=1.105;HRun=1;HaplotypeScore=2.6175;MQ=59.63;MQ0=0;MQRankSum=-0.007;QD=16.64;ReadPosRankSum=0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:24,38:62:99:1062,0,762
2    216295312    rs1250241    T    A    257.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:290,21,0
2    216299281    rs1250246    A    C    288.04    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-1.061;QD=26.19;ReadPosRankSum=-2.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:2,9:11:41.16:318,0,41
2    216299550    rs2577290    G    A    354.78    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.979;DB;DP=77;Dels=0.0;FS=2.189;HRun=0;HaplotypeScore=0.9734;MQ=56.62;MQ0=0;MQRankSum=-0.395;QD=4.61;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:46,31:77:99:385,0,1461
2    216299551    rs2692234    C    A    348.87    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.032;DB;DP=78;Dels=0.0;FS=2.216;HRun=3;HaplotypeScore=0.9734;MQ=56.66;MQ0=0;MQRankSum=-0.877;QD=4.47;ReadPosRankSum=0.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:46,32:78:99:379,0,1429
2    216299571    rs10648691    T    TTAC    1577.67    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=5.716;DB;DP=59;FS=1.374;HRun=0;HaplotypeScore=449.8532;IndelType=I;MQ=55.75;MQ0=0;MQRankSum=-2.753;QD=26.74;ReadPosRankSum=-1.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    0/1:35,23:59:99:1617,0,1234
2    216299629    rs1250247    C    G    1041.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.96;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1074,81,0
2    216300482    rs1250259    T    A    181.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.68;SNPEFF_AMINO_ACID_CHANGE=Q15L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216300378_216300791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265313    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:214,15,0
2    216808152    rs6435927    C    A    651.52    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.438;DB;DP=48;Dels=0.0;FS=6.261;HRun=0;HaplotypeScore=1.832;MQ=60.0;MQ0=0;MQRankSum=1.148;QD=13.57;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=R215I;SNPEFF_CODON_CHANGE=aGa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216808121_216808180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MREG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000236976    GT:AD:DP:GQ:PL    0/1:22,26:48:99:682,0,693
2    216810612    rs74371935    C    T    213.83    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.278;QD=19.44;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MREG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236976    GT:AD:DP:GQ:PL    0/1:4,7:11:99:244,0,123
2    216811707    rs1344695    G    T    341.74    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.179;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.198;QD=12.21;ReadPosRankSum=-0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MREG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236976    GT:AD:DP:GQ:PL    0/1:15,13:28:99:372,0,380
2    216861273    rs2303845    T    C    494.49    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.917;QD=15.95;ReadPosRankSum=1.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MREG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236976    GT:AD:DP:GQ:PL    0/1:15,16:31:99:524,0,492
2    216903894    rs10197542    A    C    245.95    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=16.4;ReadPosRankSum=1.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PECR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461330    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,237
2    216904019    rs9288513    A    T    637.43    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.243;DB;DP=66;Dels=0.0;FS=2.221;HRun=2;HaplotypeScore=1.9747;MQ=60.0;MQ0=0;MQRankSum=0.808;QD=9.66;ReadPosRankSum=0.639;SNPEFF_AMINO_ACID_CHANGE=F297L;SNPEFF_CODON_CHANGE=ttT/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216903132_216904083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PECR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265322    GT:AD:DP:GQ:PL    0/1:41,25:66:99:667,0,1112
2    216923679    rs1429148    C    T    557.17    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=54;Dels=0.0;FS=11.196;HRun=3;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.977;QD=10.32;ReadPosRankSum=0.255;SNPEFF_AMINO_ACID_CHANGE=E149K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_216923618_216923699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PECR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265322    GT:AD:DP:GQ:PL    0/1:32,22:54:99:587,0,990
2    216973869    rs6147172    GTGCGCATGCTCGGCGGGAATC    G    2706.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=0;HaplotypeScore=1043.7804;IndelType=D;MQ=60.81;MQ0=0;QD=47.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392132    GT:AD:DP:GQ:PL    1/1:22,35:57:96.32:2748,96,0
2    217012901    rs207906    A    G    3907.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=30.53;SNPEFF_AMINO_ACID_CHANGE=T524;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_217012806_217012999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392132    GT:AD:DP:GQ:PL    1/1:0,128:128:99:3908,316,0
2    217024697    rs111973269    CT    C    283.30    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.792;DB;DP=36;FS=0.0;HRun=12;HaplotypeScore=114.8593;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.475;QD=7.87;ReadPosRankSum=1.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392132    GT:AD:DP:GQ:PL    0/1:16,19:36:99:322,0,304
2    217055171    rs12470053    A    G    170.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392132    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
2    217059428    rs3732023    G    A    36.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.14;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392132    GT:AD:DP:GQ:PL    0/1:2,2:4:53.59:67,0,54
2    217059809    rs3821102    G    A    431.42    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=17.98;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392132    GT:AD:DP:GQ:PL    0/1:11,13:24:99:461,0,369
2    217069151    rs1438162    A    G    671.05    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.558;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=14.59;ReadPosRankSum=1.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392132    GT:AD:DP:GQ:PL    0/1:25,21:46:99:701,0,821
2    217123958    rs169616    T    C    520.81    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.624;DB;DP=34;Dels=0.0;FS=2.126;HRun=1;HaplotypeScore=0.9832;MQ=59.32;MQ0=0;MQRankSum=1.397;QD=15.32;ReadPosRankSum=1.737;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273067    GT:AD:DP:GQ:PL    0/1:16,18:34:99:551,0,466
2    217148417    rs876771    C    A    503.19    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.616;DB;DP=29;Dels=0.0;FS=1.73;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=2.148;QD=17.35;ReadPosRankSum=-0.863;SNPEFF_AMINO_ACID_CHANGE=S184;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_217148297_217148452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273067    GT:AD:DP:GQ:PL    0/1:12,17:29:99:533,0,306
2    217280261    rs33949990    GT    G    275.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;DB;DP=48;FS=0.0;HRun=15;HaplotypeScore=209.8388;IndelType=D;MQ=56.55;MQ0=0;MQRankSum=0.578;QD=5.73;ReadPosRankSum=0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425815    GT:AD:DP:GQ:PL    1/1:23,14:48:42.75:317,43,0
2    217280876    rs71577872    T    C    400.14    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=16.67;ReadPosRankSum=0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425815    GT:AD:DP:GQ:PL    0/1:11,13:24:99:430,0,387
2    217281150    rs3214962    AC    A    247.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=8;HaplotypeScore=31.2362;IndelType=D;MQ=61.64;MQ0=0;QD=19.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425815    GT:AD:DP:GQ:PL    1/1:3,10:13:30.05:290,30,0
2    217311315    rs72948623    A    G    1686.86    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=117;Dels=0.0;FS=0.692;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.49;QD=14.42;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357276    GT:AD:DP:GQ:PL    0/1:58,59:117:99:1717,0,1530
2    217315416    rs66931264    A    G    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357276    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:74,0,28
2    217315787    rs2066527    T    C    316.32    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.428;DB;DP=28;Dels=0.0;FS=8.302;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.507;QD=11.3;ReadPosRankSum=1.336;SNPEFF_AMINO_ACID_CHANGE=T532;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_217315569_217315787;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392128    GT:AD:DP:GQ:PL    0/1:15,13:28:99:346,0,467
2    217343136    rs5838586    G    GC    164.48    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=46.8846;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=0.597;QD=10.28;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357276    GT:AD:DP:GQ:PL    0/1:10,6:16:99:204,0,313
2    217347428    rs71579835    C    T    2670.07    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.121;DB;DP=189;Dels=0.0;FS=4.389;HRun=2;HaplotypeScore=2.6528;MQ=59.78;MQ0=0;MQRankSum=0.439;QD=14.13;ReadPosRankSum=0.874;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357276    GT:AD:DP:GQ:PL    0/1:88,101:189:99:2700,0,2722
2    217364539    rs284572    C    T    120.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL37A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446558    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
2    217469796    rs10932667    A    G    356.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC073321.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449783    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:389,30,0
2    217469833    rs10932668    A    G    79.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.85;ReadPosRankSum=-0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC073321.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449783    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:109,0,25
2    217475535    rs17495945    A    G    880.36    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=1.618;DB;DP=66;Dels=0.0;FS=6.713;HRun=0;HaplotypeScore=0.8941;MQ=59.66;MQ0=0;MQRankSum=-0.742;QD=13.14;ReadPosRankSum=0.405;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC073321.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441803    GT:AD:DP:GQ:PL    0/1:35,31:66:99:910,0,1061
2    217541582    rs2160549    T    C    3008.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5274;MQ=59.76;MQ0=0;QD=31.34;SNPEFF_AMINO_ACID_CHANGE=K237;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_217536828_217541605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233813    GT:AD:DP:GQ:PL    1/1:0,95:96:99:3041,229,0
2    218604247    rs4672848    A    C    131.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.23;SNPEFF_AMINO_ACID_CHANGE=F55C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218604210_218604298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DIRC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423123    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
2    218604356    rs4294980    G    A    81.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DIRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423123    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
2    218673147    rs35136714    T    C    151.49    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.876;QD=16.83;ReadPosRankSum=1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480416    GT:AD:DP:GQ:PL    0/1:4,5:9:99:181,0,130
2    218673230    rs112279658    G    GCA    983.95    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.637;DB;DP=65;FS=4.108;HRun=0;HaplotypeScore=238.6687;IndelType=I;MQ=59.22;MQ0=0;MQRankSum=-0.941;QD=14.91;ReadPosRankSum=0.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480416    GT:AD:DP:GQ:PL    0/1:37,26:65:99:1023,0,877
2    218674353    rs13428124    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=16.68;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480416    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:81,6,0
2    218674484    rs1035671    C    T    43.23    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.546;QD=4.32;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495556    GT:AD:DP:GQ:PL    0/1:7,3:10:73.23:73,0,253
2    218674697    rs918949    C    T    660.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=V1583I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218674546_218674714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430930    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:693,51,0
2    218675144    rs918950    G    A    463.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495556    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:496,39,0
2    218675199    rs1035672    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495556    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    218676970    rs2288162    A    C    90.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495556    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
2    218677279    rs2288163    C    T    40.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495556    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:71,0,23
2    218678582    rs7559273    C    T    191.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=23.94;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171887    GT:AD:DP:GQ:PL    0/1:2,6:8:41.55:222,0,42
2    218682474    rs12694422    A    G    799.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.97;SNPEFF_AMINO_ACID_CHANGE=S1402;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218682413_218683482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430930    GT:AD:DP:GQ:PL    1/1:0,25:25:69.17:832,69,0
2    218682771    rs3796026    A    G    220.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=G1303;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218682413_218683482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430930    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:254,21,0
2    218683154    rs2571445    A    G    731.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.03;FS=0.0;HRun=1;HaplotypeScore=3.5941;MQ=55.9;MQ0=0;QD=25.21;SNPEFF_AMINO_ACID_CHANGE=W1176R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218682413_218683482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430930    GT:AD:DP:GQ:PL    1/1:0,28:28:60.18:764,60,0
2    218683257    rs2571442    A    G    717.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.9;SNPEFF_AMINO_ACID_CHANGE=A1141;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218682413_218683482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430930    GT:AD:DP:GQ:PL    1/1:0,24:24:57.18:751,57,0
2    218683368    rs34144104    C    T    892.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.68;SNPEFF_AMINO_ACID_CHANGE=P1104;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218682413_218683482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430930    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:925,72,0
2    218694510    rs55877504    CT    C    1544.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=3;HaplotypeScore=383.5683;IndelType=D;MQ=60.75;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171887    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1586,129,0
2    218694551    rs16858298    A    G    1388.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.48;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171887    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1421,108,0
2    218694962    rs10165160    C    G    206.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171887    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
2    218712918    rs3796031    C    T    173.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=11.57;ReadPosRankSum=-0.059;SNPEFF_AMINO_ACID_CHANGE=S649;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218712233_218713810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000171887    GT:AD:DP:GQ:PL    0/1:9,6:15:99:204,0,246
2    218745685    rs10199795    G    A    1137.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_AMINO_ACID_CHANGE=S330;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218745621_218745737;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000171887    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1171,87,0
2    218747073    rs11680854    A    C    351.87    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=2.485;DB;DP=35;Dels=0.0;FS=3.22;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.373;QD=10.05;ReadPosRankSum=1.303;SNPEFF_AMINO_ACID_CHANGE=I311M;SNPEFF_CODON_CHANGE=atT/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218747069_218747134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000171887    GT:AD:DP:GQ:PL    0/1:23,12:35:99:382,0,732
2    218801767    rs4674232    C    T    812.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_218801698_218801885;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423413    GT:AD:DP:GQ:PL    1/1:0,27:28:63.19:845,63,0
2    218867708    rs13382750    C    A    40.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.17;ReadPosRankSum=0.358;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_218867563_218867718;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446903    GT:AD:DP:GQ:PL    0/1:3,2:5:59.52:71,0,60
2    218925149    rs6758271    G    A    774.52    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=2.41;DB;DP=46;Dels=0.0;FS=4.443;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;MQRankSum=0.219;QD=16.84;ReadPosRankSum=-0.657;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RUFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457754    GT:AD:DP:GQ:PL    0/1:16,30:46:99:805,0,461
2    218935299    rs13385042    T    C    214.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=15.3;ReadPosRankSum=-0.421;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_218935223_218935374;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RUFY4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374155    GT:AD:DP:GQ:PL    0/1:7,7:14:99:244,0,212
2    218937025    .    A    G    397.90    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.658;DP=37;Dels=0.0;FS=6.941;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.875;QD=10.75;ReadPosRankSum=-1.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RUFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463618    GT:AD:DP:GQ:PL    0/1:20,17:37:99:428,0,706
2    218939630    rs10932744    C    T    36.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.08;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RUFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463618    GT:AD:DP:GQ:PL    0/1:2,2:4:66.32:66,0,70
2    218947664    rs149826043    TA    T    52.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=205.9618;IndelType=D;MQ=29.0;MQ0=0;QD=8.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RUFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344321    GT:AD:DP:GQ:PL    1/1:0,6:6:15.09:94,15,0
2    219000310    rs2230054    C    T    2173.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.22;MQ0=0;QD=32.44;SNPEFF_AMINO_ACID_CHANGE=L262;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_218999500_219001976;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318507    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2206,172,0
2    219000734    rs1126579    T    C    927.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=38.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415392    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:960,72,0
2    219028932    rs16858808    G    A    1282.01    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=4.735;DB;DP=75;Dels=0.0;FS=2.285;HRun=1;HaplotypeScore=4.7013;MQ=59.44;MQ0=0;MQRankSum=0.038;QD=17.09;ReadPosRankSum=1.003;SNPEFF_AMINO_ACID_CHANGE=R279C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219028493_219029523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421691    GT:AD:DP:GQ:PL    0/1:34,41:75:99:1312,0,956
2    219029843    rs16858811    A    C    1712.99    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=107;Dels=0.0;FS=9.304;HRun=1;HaplotypeScore=0.8941;MQ=59.26;MQ0=0;MQRankSum=0.13;QD=16.01;ReadPosRankSum=-0.483;SNPEFF_AMINO_ACID_CHANGE=M31R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219027568_219029967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295683    GT:AD:DP:GQ:PL    0/1:53,54:107:99:1743,0,1678
2    219030077    rs16858816    G    A    112.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.75;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295683    GT:AD:DP:GQ:PL    0/1:2,4:6:65.40:142,0,65
2    219093278    rs60528331    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295685    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    219099260    rs1018288    G    C    164.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420104    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
2    219103313    rs34654904    C    CT    94.41    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=33;FS=0.0;HRun=22;HaplotypeScore=311.5079;IndelType=I;MQ=40.95;MQ0=0;MQRankSum=-1.626;QD=2.86;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420104    GT:AD:DP:GQ:PL    0/1:18,6:33:6.93:133,0,7
2    219117605    rs114878161    A    T    88.72    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=8.07;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295685    GT:AD:DP:GQ:PL    0/1:7,4:11:99:119,0,254
2    219128506    rs2292549    C    T    411.21    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.641;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.575;QD=15.82;ReadPosRankSum=1.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248450    GT:AD:DP:GQ:PL    0/1:12,14:26:99:441,0,256
2    219128515    rs77115694    C    T    277.75    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.605;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.813;QD=12.62;ReadPosRankSum=-0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248450    GT:AD:DP:GQ:PL    0/1:12,10:22:99:308,0,335
2    219129060    rs2382816    A    G    197.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447885    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:230,18,0
2    219129905    rs115942379    G    A    457.74    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.603;DB;DP=30;Dels=0.0;FS=6.429;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.229;QD=15.26;ReadPosRankSum=1.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447885    GT:AD:DP:GQ:PL    0/1:16,14:30:99:488,0,475
2    219130514    rs1079204    G    A    140.59    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.033;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=5.62;ReadPosRankSum=-0.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447885    GT:AD:DP:GQ:PL    0/1:19,6:25:99:171,0,602
2    219132381    rs74349235    C    T    313.08    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.22;DB;DP=28;Dels=0.0;FS=10.392;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.073;QD=11.18;ReadPosRankSum=0.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPBAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479077    GT:AD:DP:GQ:PL    0/1:16,12:28:99:343,0,433
2    219134928    rs1877714    A    G    282.82    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.873;MQ=58.78;MQ0=0;MQRankSum=-1.325;QD=14.89;ReadPosRankSum=-0.618;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258412    GT:AD:DP:GQ:PL    0/1:9,10:19:99:313,0,317
2    219139573    rs6734242    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248451    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    219140288    rs2292550    G    C    650.32    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.789;DB;DP=37;Dels=0.0;FS=8.302;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-2.399;QD=17.58;ReadPosRankSum=-0.419;SNPEFF_AMINO_ACID_CHANGE=P108;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219139729_219140344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445635    GT:AD:DP:GQ:PL    0/1:13,24:37:99:680,0,368
2    219142023    rs2168703    G    A    515.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248451    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:548,45,0
2    219142491    rs2271543    C    T    288.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=11.55;ReadPosRankSum=0.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248451    GT:AD:DP:GQ:PL    0/1:15,10:25:99:319,0,462
2    219142594    rs3817266    C    T    494.67    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.786;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.845;QD=19.79;ReadPosRankSum=-0.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248451    GT:AD:DP:GQ:PL    0/1:8,17:25:99:525,0,245
2    219142773    rs6707559    C    T    294.62    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.243;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.111;QD=16.37;ReadPosRankSum=0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413976    GT:AD:DP:GQ:PL    0/1:8,10:18:99:325,0,198
2    219143229    rs2292551    G    A    1215.83    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.13;DB;DP=87;Dels=0.0;FS=4.246;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.812;QD=13.98;ReadPosRankSum=0.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413976    GT:AD:DP:GQ:PL    0/1:43,44:87:99:1246,0,1211
2    219143327    rs63368160    T    C    645.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.255;QD=14.67;ReadPosRankSum=1.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413976    GT:AD:DP:GQ:PL    0/1:22,22:44:99:675,0,590
2    219143923    rs41272681    A    T    268.37    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.423;QD=16.77;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413976    GT:AD:DP:GQ:PL    0/1:7,9:16:99:298,0,222
2    219144089    rs12987180    G    A    306.87    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.047;QD=10.96;ReadPosRankSum=-1.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413976    GT:AD:DP:GQ:PL    0/1:17,11:28:99:337,0,476
2    219144149    rs12987219    G    A    103.66    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.143;QD=9.42;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413976    GT:AD:DP:GQ:PL    0/1:6,5:11:99:134,0,219
2    219144815    rs2045435    T    C    1950.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=29.56;ReadPosRankSum=0.133;SNPEFF_AMINO_ACID_CHANGE=A17;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219144749_219144849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543441    GT:AD:DP:GQ:PL    1/1:1,65:66:99:1984,156,0
2    219205471    rs34014804    G    A    1267.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.83;DB;DP=75;Dels=0.0;FS=1.976;HRun=0;HaplotypeScore=1.6988;MQ=59.07;MQ0=0;MQRankSum=0.133;QD=16.9;ReadPosRankSum=-0.288;SNPEFF_AMINO_ACID_CHANGE=G102;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219205451_219205509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNKD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436005    GT:AD:DP:GQ:PL    0/1:30,45:75:99:1298,0,928
2    219209393    rs1350336    A    G    1513.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483797    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1547,120,0
2    219209796    rs921970    C    A    81.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436005    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
2    219221846    rs4324314    G    A    547.58    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7273;MQ=59.56;MQ0=0;MQRankSum=0.227;QD=10.33;ReadPosRankSum=1.573;SNPEFF_AMINO_ACID_CHANGE=S18;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219221818_219221910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289388    GT:AD:DP:GQ:PL    0/1:32,21:53:99:578,0,874
2    219225162    rs4674296    T    C    201.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480532    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
2    219229641    rs11696005    T    C    148.27    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.71;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495773    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:178,0,24
2    219231807    rs3845833    C    T    664.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=P272;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219231747_219231823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289388    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:698,51,0
2    219232354    rs7608923    C    A    327.18    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.922;QD=20.45;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289388    GT:AD:DP:GQ:PL    0/1:6,10:16:99:357,0,154
2    219249013    rs2276631    C    T    1686.15    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=106;Dels=0.0;FS=0.733;HRun=2;HaplotypeScore=2.3548;MQ=59.35;MQ0=0;MQRankSum=0.41;QD=15.91;ReadPosRankSum=0.468;SNPEFF_AMINO_ACID_CHANGE=F66;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219248966_219249088;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC11A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233202    GT:AD:DP:GQ:PL    0/1:47,59:106:99:1716,0,1334
2    219249771    rs6734861    C    G    130.38    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=21.73;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233202    GT:AD:DP:GQ:PL    0/1:1,5:6:19.74:160,0,20
2    219250003    rs3731865    G    C    538.37    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.108;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.696;QD=14.55;ReadPosRankSum=0.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233202    GT:AD:DP:GQ:PL    0/1:15,22:37:99:568,0,476
2    219252377    rs2290708    C    T    1739.42    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.39;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3893;MQ=59.63;MQ0=0;MQRankSum=1.488;QD=13.92;ReadPosRankSum=0.433;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460592    GT:AD:DP:GQ:PL    0/1:64,61:125:99:1769,0,2041
2    219254622    rs2695342    A    G    949.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=A157;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219254593_219254751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC11A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539932    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:983,81,0
2    219254842    rs3816560    T    C    61.61    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=3.522;HRun=3;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.361;QD=6.85;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460592    GT:AD:DP:GQ:PL    0/1:5,4:9:91.61:92,0,190
2    219257688    rs2045433    T    C    770.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469449    GT:AD:DP:GQ:PL    1/1:0,25:26:60.20:803,60,0
2    219265094    rs2579958    T    C    126.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTDSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492545    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
2    219265136    rs72533508    T    TC    182.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=13.5204;IndelType=I;MQ=64.19;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTDSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492545    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
2    219266108    rs2607726    C    G    245.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTDSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492545    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
2    219266204    rs2252235    T    C    322.61    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.349;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.09;QD=11.95;ReadPosRankSum=-1.713;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTDSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492545    GT:AD:DP:GQ:PL    0/1:16,11:27:99:353,0,470
2    219266423    rs2227251    C    A    209.28    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.049;QD=12.31;ReadPosRankSum=1.513;SNPEFF_AMINO_ACID_CHANGE=G68;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219266287_219266435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTDSP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273062    GT:AD:DP:GQ:PL    0/1:10,7:17:99:239,0,264
2    219288382    rs4672893    A    G    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248444    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
2    219295835    rs4674307    G    A    318.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454069    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
2    219305404    rs2305833    G    C    991.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=34.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419986    GT:AD:DP:GQ:PL    1/1:0,29:29:81.22:1024,81,0
2    219319657    rs6436058    A    G    1632.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=L885S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219318224_219319740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415516    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1666,132,0
2    219320207    rs3932856    C    A    576.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.09;MQ0=0;QD=36.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248444    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:609,48,0
2    219320233    rs71880343    GAAA    G    403.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.369;DB;DP=29;FS=0.0;HRun=18;HaplotypeScore=260.8252;IndelType=D;MQ=50.48;MQ0=0;MQRankSum=0.822;QD=13.9;ReadPosRankSum=0.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248444    GT:AD:DP:GQ:PL    1/1:10,15:29:30.83:445,31,0
2    219320496    rs62183667    C    T    345.58    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.566;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.06;MQ0=0;MQRankSum=1.333;QD=15.03;ReadPosRankSum=-1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248444    GT:AD:DP:GQ:PL    0/1:10,13:23:99:376,0,277
2    219321692    rs67349270    CA    C    81.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=11;HaplotypeScore=22.1588;IndelType=D;MQ=63.02;MQ0=0;QD=11.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248444    GT:AD:DP:GQ:PL    1/1:2,5:7:14.98:123,15,0
2    219324317    rs11890042    G    T    89.39    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=2.655;MQ=57.66;MQ0=0;MQRankSum=0.633;QD=8.94;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258399    GT:AD:DP:GQ:PL    0/1:4,6:10:99:119,0,135
2    219339238    rs113268774    C    G    242.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.225;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.965;QD=17.31;ReadPosRankSum=-1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475553    GT:AD:DP:GQ:PL    0/1:6,8:14:99:272,0,198
2    219339283    rs549026    T    C    1258.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475553    GT:AD:DP:GQ:PL    1/1:0,35:36:96.30:1291,96,0
2    219350358    rs10541464    CAAAA    C    219.15    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=51;FS=7.659;HRun=24;HaplotypeScore=412.0158;IndelType=D;MQ=44.14;MQ0=0;MQRankSum=0.033;QD=4.3;ReadPosRankSum=1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258399    GT:AD:DP:GQ:PL    0/1:19,11:51:99:258,0,139
2    219353195    rs10932782    C    T    2350.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.67;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258399    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2383,175,0
2    219375018    rs514356    C    T    217.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258399    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
2    219411203    rs514799    A    G    87.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258399    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    219418150    rs62193785    A    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258399    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
2    219423605    rs642520    G    A    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258399    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
2    219445165    rs589967    T    C    204.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RQCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273064    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:238,18,0
2    219447911    .    AACGTTT    A    625.78    PASS    AB=0.903;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DP=56;FS=10.955;HRun=0;HaplotypeScore=656.5169;IndelType=D;MQ=51.92;MQ0=0;MQRankSum=-1.326;QD=11.17;ReadPosRankSum=-1.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RQCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433439    GT:AD:DP:GQ:PL    0/1:50,5:56:99:665,0,798
2    219447948    .    GTGTGTGTGTCTCTCTCTCTCTCTCTCTCTCTC    G    847.91    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=3.962;DP=31;FS=0.0;HRun=0;HaplotypeScore=913.387;IndelType=D;MQ=42.81;MQ0=0;MQRankSum=2.994;QD=27.35;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RQCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433439    GT:AD:DP:GQ:PL    0/1:21,10:31:99:887,0,237
2    219458656    rs538483    T    C    274.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=30.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RQCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295701    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
2    219480535    rs142863279    G    A    589.51    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.15;DB;DP=41;Dels=0.0;FS=6.989;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.19;QD=14.38;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251959    GT:AD:DP:GQ:PL    0/1:19,22:41:99:620,0,668
2    219480804    rs485765    G    C    492.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=22.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251959    GT:AD:DP:GQ:PL    1/1:0,22:22:45.10:526,45,0
2    219487299    rs1850169    A    T    569.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=19.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415854    GT:AD:DP:GQ:PL    1/1:0,29:29:60.11:602,60,0
2    219492924    rs612874    T    C    4425.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5584;MQ=59.72;MQ0=0;QD=30.1;SNPEFF_AMINO_ACID_CHANGE=C315;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219492752_219492953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251959    GT:AD:DP:GQ:PL    1/1:0,147:147:99:4425,343,0
2    219492952    rs61733653    C    T    1586.63    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=4.88;DB;DP=123;Dels=0.0;FS=0.71;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.487;QD=12.9;ReadPosRankSum=-0.072;SNPEFF_AMINO_ACID_CHANGE=R325W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219492752_219492953;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251959    GT:AD:DP:GQ:PL    0/1:66,57:123:99:1617,0,1762
2    219498759    rs7574429    T    G    156.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457426    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
2    219501133    rs2278530    G    A    5918.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=189;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=59.4;MQ0=0;QD=31.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457426    GT:AD:DP:GQ:PL    1/1:0,185:189:99:5919,475,0
2    219501328    rs1055816    G    A    622.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457426    GT:AD:DP:GQ:PL    1/1:0,20:20:51.12:655,51,0
2    219508988    rs3770214    T    C    2953.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.72;MQ0=0;QD=35.59;SNPEFF_AMINO_ACID_CHANGE=S751G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219506751_219509787;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF142;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411696    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2987,229,0
2    219509618    rs2230115    C    A    685.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=51.43;MQ0=0;QD=26.37;SNPEFF_AMINO_ACID_CHANGE=A541S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219506751_219509787;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF142;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411696    GT:AD:DP:GQ:PL    1/1:0,23:26:57.18:719,57,0
2    219510768    rs4674320    A    G    291.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF142;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411696    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:325,27,0
2    219517088    rs4674323    T    C    957.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF142;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432460    GT:AD:DP:GQ:PL    1/1:0,30:30:75.23:990,75,0
2    219525582    rs6722185    A    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490188    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
2    219529924    rs112523387    T    G    60.41    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=3.78;ReadPosRankSum=-1.152;SNPEFF_AMINO_ACID_CHANGE=Y207S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219529878_219529970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295704    GT:AD:DP:GQ:PL    0/1:12,4:16:90.41:90,0,372
2    219602499    rs3731877    G    C    1035.47    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.515;DB;DP=70;Dels=0.0;FS=5.04;HRun=0;HaplotypeScore=0.9469;MQ=59.73;MQ0=0;MQRankSum=1.884;QD=14.79;ReadPosRankSum=1.305;SNPEFF_AMINO_ACID_CHANGE=E34Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219602297_219603886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258398    GT:AD:DP:GQ:PL    0/1:39,31:70:99:1065,0,1152
2    219602819    rs3731876    G    A    932.96    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.954;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3544;MQ=59.56;MQ0=0;MQRankSum=-1.294;QD=9.93;ReadPosRankSum=0.316;SNPEFF_AMINO_ACID_CHANGE=P140;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219602297_219603886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258398    GT:AD:DP:GQ:PL    0/1:60,32:94:99:963,0,1867
2    219605118    rs7562426    G    A    68.81    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.83;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415717    GT:AD:DP:GQ:PL    0/1:4,3:7:98.81:99,0,115
2    219609776    rs2272191    G    A    999.97    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=4.741;DB;DP=56;Dels=0.0;FS=4.162;HRun=0;HaplotypeScore=1.9774;MQ=59.59;MQ0=0;MQRankSum=0.42;QD=17.86;ReadPosRankSum=-1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258398    GT:AD:DP:GQ:PL    0/1:23,32:56:99:1030,0,649
2    219609995    rs2272190    G    C    946.74    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.45;DB;DP=78;Dels=0.0;FS=1.282;HRun=5;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-2.188;QD=12.14;ReadPosRankSum=0.563;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258398    GT:AD:DP:GQ:PL    0/1:35,42:78:99:977,0,1023
2    219610322    rs2272189    G    A    31.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258398    GT:AD:DP:GQ:PL    0/1:3,2:5:61.33:61,0,96
2    219610433    rs586194    A    G    468.87    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.691;DB;DP=28;Dels=0.0;FS=3.876;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.138;QD=16.75;ReadPosRankSum=1.612;SNPEFF_AMINO_ACID_CHANGE=E437;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219610414_219610524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457313    GT:AD:DP:GQ:PL    0/1:13,15:28:99:499,0,332
2    219612282    rs2272188    A    G    543.30    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.254;DB;DP=60;Dels=0.0;FS=2.578;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.023;QD=9.06;ReadPosRankSum=-1.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461181    GT:AD:DP:GQ:PL    0/1:28,32:60:99:573,0,743
2    219618237    rs6436073    A    C    1089.15    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=6.177;DB;DP=86;Dels=0.0;FS=2.392;HRun=2;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.556;QD=12.66;ReadPosRankSum=1.952;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465558    GT:AD:DP:GQ:PL    0/1:49,37:86:99:1119,0,1482
2    219618497    rs6757772    T    G    103.73    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=3.138;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.047;QD=5.46;ReadPosRankSum=-0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465558    GT:AD:DP:GQ:PL    0/1:12,7:19:99:134,0,422
2    219618708    rs55900247    T    C    641.10    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.058;QD=17.33;ReadPosRankSum=0.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465558    GT:AD:DP:GQ:PL    0/1:16,21:37:99:671,0,520
2    219677690    rs61733619    A    G    458.36    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=34;Dels=0.0;FS=3.102;HRun=0;HaplotypeScore=0.9916;MQ=59.32;MQ0=0;MQRankSum=1.766;QD=13.48;ReadPosRankSum=-0.019;SNPEFF_AMINO_ACID_CHANGE=Q202;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219677647_219677748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP27A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411688    GT:AD:DP:GQ:PL    0/1:15,19:34:99:488,0,475
2    219691566    rs1467320    A    G    850.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRKAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430489    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:884,66,0
2    219692527    rs34846588    G    GC    1302.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=3;HaplotypeScore=74.6724;IndelType=I;MQ=60.63;MQ0=0;QD=38.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRKAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430489    GT:AD:DP:GQ:PL    1/1:1,33:34:96.32:1345,96,0
2    219692790    rs5838710    A    AG    294.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=3;HaplotypeScore=22.5143;IndelType=I;MQ=54.56;MQ0=0;QD=36.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRKAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430489    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:336,24,0
2    219696014    rs650898    G    A    250.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRKAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392098    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:283,21,0
2    219736369    rs141494427    C    G    101.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.956;QD=11.26;ReadPosRankSum=1.221;SNPEFF_AMINO_ACID_CHANGE=P155R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219736207_219736541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233948    GT:AD:DP:GQ:PL    0/1:3,6:9:99:131,0,100
2    219884464    rs73090806    C    G    374.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341552    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:408,30,0
2    219884484    rs12464687    A    G    171.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341552    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
2    219889022    rs9653350    C    G    491.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409865    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:524,39,0
2    219890979    rs7560948    T    C    180.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409865    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:213,18,0
2    219894572    rs55946465    C    T    210.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295729    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
2    219895315    rs7588702    A    G    159.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295729    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:193,18,0
2    219895548    rs56411706    C    A    943.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.614;QD=32.53;ReadPosRankSum=-0.179;SNPEFF_AMINO_ACID_CHANGE=A276S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219895411_219895556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441164    GT:AD:DP:GQ:PL    1/1:1,28:29:42.75:976,43,0
2    219895588    rs56068521    C    T    448.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295729    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:482,36,0
2    219896550    rs4453686    C    G    92.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295729    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    219900068    rs17852959    C    T    245.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=V161M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219898414_219900386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295729    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
2    219903258    rs6736922    T    G    900.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=M55L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219903097_219903300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409865    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:934,69,0
2    219903723    rs4674354    C    T    1746.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.189;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=34.25;ReadPosRankSum=1.189;SNPEFF_AMINO_ACID_CHANGE=V16;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219903618_219903772;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341552    GT:AD:DP:GQ:PL    1/1:1,50:51:99:1780,104,0
2    219905247    rs3736403    T    C    1260.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_AMINO_ACID_CHANGE=N22S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219905241_219905286;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC108;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409865    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1294,93,0
2    219920037    rs394452    A    G    608.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_AMINO_ACID_CHANGE=T376;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219919146_219920587;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IHH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295731    GT:AD:DP:GQ:PL    1/1:0,24:24:48.16:642,48,0
2    219920565    rs3731878    C    T    442.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=T200;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219919146_219920587;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IHH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295731    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:476,36,0
2    219941063    rs897477    G    A    2348.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.69;SNPEFF_AMINO_ACID_CHANGE=N310;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_219940039_219941167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHEJ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409720    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2381,181,0
2    220011092    rs2293081    A    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHEJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450447    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
2    220022176    rs6436120    C    T    764.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.43;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHEJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481764    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:798,60,0
2    220037393    rs4674361    A    G    3004.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.22;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=L383P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220036619_220037850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNPPD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360507    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3038,235,0
2    220037444    rs17655123    G    A    1796.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_AMINO_ACID_CHANGE=P366L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220036619_220037850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNPPD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360507    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1830,141,0
2    220044275    rs78862042    A    C    901.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM134A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430297    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:935,69,0
2    220045035    rs7577690    G    A    717.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.678;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.583;QD=31.18;ReadPosRankSum=-0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM134A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465672    GT:AD:DP:GQ:PL    1/1:1,22:23:21.43:750,21,0
2    220046349    rs2272017    G    C    810.20    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.994;DB;DP=59;Dels=0.0;FS=1.274;HRun=0;HaplotypeScore=1.9733;MQ=58.02;MQ0=0;MQRankSum=-0.008;QD=13.73;ReadPosRankSum=-0.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM134A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430747    GT:AD:DP:GQ:PL    0/1:31,28:59:99:840,0,866
2    220046840    rs3210652    G    A    4475.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.443;MQ=59.47;MQ0=0;QD=36.68;SNPEFF_AMINO_ACID_CHANGE=R167H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220046735_220047030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM134A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443518    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4475,334,0
2    220071803    rs6714820    C    G    128.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=25.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265316    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
2    220072766    rs4674366    G    T    2217.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.196;MQ=59.35;MQ0=0;QD=34.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265316    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2250,172,0
2    220072852    rs4674367    C    T    609.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.883;DB;DP=35;Dels=0.0;FS=1.703;HRun=1;HaplotypeScore=1.9975;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=17.43;ReadPosRankSum=-0.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265316    GT:AD:DP:GQ:PL    0/1:15,20:35:99:640,0,444
2    220078496    rs2139823    T    C    8042.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=32.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427013    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8043,611,0
2    220083279    rs1109866    C    T    743.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=L39;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220082847_220083712;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265316    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:777,60,0
2    220083453    rs1109867    G    T    182.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATG9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361242    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:216,18,0
2    220085845    rs2276633    A    G    477.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.08;SNPEFF_AMINO_ACID_CHANGE=T714;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220085802_220086024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATG9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409422    GT:AD:DP:GQ:PL    1/1:0,17:17:39.11:510,39,0
2    220088248    rs908196    A    G    468.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATG9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412355    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:502,42,0
2    220089590    rs35172973    T    TG    1500    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=4;HaplotypeScore=194.9532;IndelType=I;MQ=58.06;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATG9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412355    GT:AD:DP:GQ:PL    1/1:6,38:44:99:1542,114,0
2    220089685    rs2276637    G    C    4657.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5264;MQ=59.98;MQ0=0;QD=35.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATG9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412355    GT:AD:DP:GQ:PL    1/1:1,131:132:99:4657,340,0
2    220100787    rs2293079    C    T    453.99    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=37;Dels=0.0;FS=1.438;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.295;QD=12.27;ReadPosRankSum=-0.411;SNPEFF_AMINO_ACID_CHANGE=P466L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220100732_220100817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKZF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409849    GT:AD:DP:GQ:PL    0/1:20,17:37:99:484,0,662
2    220113242    rs56772206    T    G    2754.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.31;SNPEFF_AMINO_ACID_CHANGE=L175;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220113143_220113468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409516    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2787,205,0
2    220113384    rs8447    G    A    37.28    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=57.05;MQ0=0;MQRankSum=-0.182;QD=2.33;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461417    GT:AD:DP:GQ:PL    0/1:12,4:16:67.28:67,0,429
2    220117333    rs6712442    T    G    39.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=9.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396738    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:71,6,0
2    220130890    rs62191852    G    A    68.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.59;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398989    GT:AD:DP:GQ:PL    0/1:6,3:9:98.34:98,0,160
2    220136155    rs7594971    T    C    3461.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.42;MQ0=3;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398989    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3461,286,0
2    220136351    rs3731892    G    A    2881.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.4875;MQ=56.42;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398989    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2914,241,0
2    220136371    rs3731894    T    C    3127.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.38;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398989    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3160,247,0
2    220147808    rs140419734    GTCT    G    159.82    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=51.9408;IndelType=D;MQ=54.85;MQ0=0;MQRankSum=-2.163;QD=11.42;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421532    GT:AD:DP:GQ:PL    0/1:9,5:14:99:199,0,486
2    220156146    rs1983297    G    A    189.09    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=15;Dels=0.0;FS=6.803;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.405;QD=12.61;ReadPosRankSum=0.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336576    GT:AD:DP:GQ:PL    0/1:8,7:15:99:219,0,214
2    220162015    rs17847406    C    G    420.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.482;DB;DP=32;Dels=0.0;FS=1.468;HRun=4;HaplotypeScore=1.5518;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=13.15;ReadPosRankSum=1.206;SNPEFF_AMINO_ACID_CHANGE=P586;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220161955_220162155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537666    GT:AD:DP:GQ:PL    0/1:16,16:32:99:451,0,388
2    220162959    rs12105638    G    A    114.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.12;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412847    GT:AD:DP:GQ:PL    0/1:2,4:6:66.35:145,0,66
2    220163507    rs13014450    C    T    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=7.59;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412847    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,95
2    220165763    rs2292606    T    C    147.78    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=7.39;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412847    GT:AD:DP:GQ:PL    0/1:13,7:20:99:178,0,448
2    220168616    rs2271594    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468454    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    220172576    rs7591986    A    C    1511.56    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.446;DB;DP=106;Dels=0.0;FS=10.376;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.959;QD=14.26;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295718    GT:AD:DP:GQ:PL    0/1:51,55:106:99:1542,0,1613
2    220172731    rs2292601    A    G    196.91    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=19.69;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295718    GT:AD:DP:GQ:PL    0/1:3,7:10:89.14:227,0,89
2    220173905    rs57623838    C    T    270.92    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=22;Dels=0.0;FS=7.858;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.326;QD=12.31;ReadPosRankSum=1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295718    GT:AD:DP:GQ:PL    0/1:8,14:22:99:301,0,231
2    220174056    rs6736979    T    C    32.06    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=6.41;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446182    GT:AD:DP:GQ:PL    0/1:1,4:5:32.73:62,0,33
2    220194247    rs3832109    A    AATT    829.50    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.883;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=90.9737;IndelType=I;MQ=55.04;MQ0=0;MQRankSum=-0.988;QD=28.6;ReadPosRankSum=-0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RESP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333527    GT:AD:DP:GQ:PL    0/1:15,14:29:99:869,0,615
2    220195446    rs6707009    C    G    114.99    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.219;QD=6.05;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RESP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333527    GT:AD:DP:GQ:PL    0/1:13,6:19:99:145,0,451
2    220195738    rs34019246    GTCT    G    179.01    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=34.4254;IndelType=D;MQ=54.65;MQ0=0;MQRankSum=-1.159;QD=19.89;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RESP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333527    GT:AD:DP:GQ:PL    0/1:4,5:9:99:218,0,241
2    220197207    rs2048737    T    C    200.33    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.818;QD=11.78;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RESP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333527    GT:AD:DP:GQ:PL    0/1:8,9:17:99:230,0,287
2    220197321    rs2385405    C    T    112.99    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=18;Dels=0.0;FS=9.425;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=6.28;ReadPosRankSum=1.38;SNPEFF_AMINO_ACID_CHANGE=E53K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220197246_220197460;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RESP18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333527    GT:AD:DP:GQ:PL    0/1:13,5:18:99:143,0,386
2    220239534    rs3731904    G    A    99.31    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=7.09;ReadPosRankSum=-0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462779    GT:AD:DP:GQ:PL    0/1:9,5:14:99:129,0,300
2    220239561    rs3731905    C    G    192.06    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.868;QD=12.8;ReadPosRankSum=0.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462779    GT:AD:DP:GQ:PL    0/1:8,7:15:99:222,0,215
2    220246218    rs6436148    T    C    5129.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5449;MQ=59.28;MQ0=0;QD=34.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322176    GT:AD:DP:GQ:PL    1/1:0,149:149:99:5129,391,0
2    220249329    rs2002892    C    T    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322176    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
2    220250147    rs907679    A    G    760.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=V151A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220250146_220250253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:794,63,0
2    220250322    rs878437    C    A    960.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=33.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430206    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:994,72,0
2    220250826    rs2271456    G    A    1078.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.34;MQ0=0;QD=33.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519698    GT:AD:DP:GQ:PL    1/1:0,32:32:87.24:1112,87,0
2    220250897    rs34433294    AG    A    1369.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=3;HaplotypeScore=148.0803;IndelType=D;MQ=60.85;MQ0=0;QD=36.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519698    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1411,114,0
2    220251178    rs2271457    T    C    691.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=28.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519698    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:724,60,0
2    220251208    rs1040009    T    C    291.02    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=19;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=15.32;ReadPosRankSum=-0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519698    GT:AD:DP:GQ:PL    0/1:9,10:19:99:321,0,268
2    220283259    rs1318299    A    G    464.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=25.79;SNPEFF_AMINO_ACID_CHANGE=P25;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220283099_220283762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373960    GT:AD:DP:GQ:PL    1/1:0,18:18:39.12:497,39,0
2    220283277    rs2017800    T    C    434.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=27.15;SNPEFF_AMINO_ACID_CHANGE=S31;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220283099_220283762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373960    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:467,36,0
2    220283826    rs907677    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373960    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    220284717    rs2666106    G    C    741.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373960    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:774,60,0
2    220284779    rs12991025    C    T    757.86    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=43;Dels=0.0;FS=1.442;HRun=1;HaplotypeScore=1.9841;MQ=59.46;MQ0=0;MQRankSum=0.227;QD=17.62;ReadPosRankSum=-1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373960    GT:AD:DP:GQ:PL    0/1:14,29:43:99:788,0,334
2    220285309    rs1058261    C    T    491.03    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.846;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.707;QD=14.44;ReadPosRankSum=0.397;SNPEFF_AMINO_ACID_CHANGE=D276;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220285217_220285378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373960    GT:AD:DP:GQ:PL    0/1:16,18:34:99:521,0,454
2    220285666    rs12920    G    C    319.96    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=13.33;ReadPosRankSum=0.637;SNPEFF_AMINO_ACID_CHANGE=L338;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220285550_220285675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373960    GT:AD:DP:GQ:PL    0/1:13,11:24:99:350,0,393
2    220286142    rs1058284    G    A    856.06    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.712;DB;DP=63;Dels=0.0;FS=0.962;HRun=0;HaplotypeScore=0.9933;MQ=59.27;MQ0=0;MQRankSum=1.024;QD=13.59;ReadPosRankSum=0.516;SNPEFF_AMINO_ACID_CHANGE=A368;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220286062_220286282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373960    GT:AD:DP:GQ:PL    0/1:31,32:63:99:886,0,929
2    220306413    rs4674398    G    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    220315970    rs10932806    G    A    1173.07    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.032;DB;DP=83;Dels=0.0;FS=16.532;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.749;QD=14.13;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=K638;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220315858_220316001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396698    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1203,0,1300
2    220330724    rs1567488    C    T    162.67    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=50.96;MQ0=0;MQRankSum=0.717;QD=14.79;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463218    GT:AD:DP:GQ:PL    0/1:5,6:11:99:193,0,143
2    220330804    rs1567487    T    C    58.69    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-0.831;QD=4.51;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463218    GT:AD:DP:GQ:PL    0/1:6,7:13:88.68:89,0,119
2    220333950    rs10167209    T    C    767.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=P1188;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220333878_220334101;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    1/1:0,24:24:66.15:800,66,0
2    220342004    rs45519033    G    A    97.03    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;Dels=0.0;FS=6.264;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=1.246;QD=8.82;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=E1522;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220341999_220342167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,198
2    220345117    rs4674403    T    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    220345118    rs4674404    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    220353104    rs875097    A    G    640.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:673,51,0
2    220353161    rs11892048    G    C    630.99    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.205;DB;DP=34;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.284;QD=18.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    0/1:13,21:34:99:661,0,356
2    220353440    rs62191888    G    T    166.10    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.101;QD=12.78;ReadPosRankSum=1.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    0/1:7,6:13:99:196,0,237
2    220354108    rs55760516    A    G    696.52    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.814;DB;DP=50;Dels=0.0;FS=6.23;HRun=2;HaplotypeScore=2.4761;MQ=58.6;MQ0=0;MQRankSum=0.231;QD=13.93;ReadPosRankSum=0.693;SNPEFF_AMINO_ACID_CHANGE=R2790G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220354058_220354661;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    0/1:23,27:50:99:727,0,681
2    220354542    rs55969678    G    A    479.41    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=37;Dels=0.0;FS=11.789;HRun=0;HaplotypeScore=0.734;MQ=58.74;MQ0=0;MQRankSum=0.445;QD=12.96;ReadPosRankSum=0.812;SNPEFF_AMINO_ACID_CHANGE=P2934;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220354058_220354661;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    0/1:21,16:37:99:509,0,733
2    220354757    rs6742231    G    C    146.45    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=13.31;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    0/1:5,6:11:99:176,0,113
2    220355529    rs12464085    A    G    620.15    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=51;Dels=0.0;FS=1.121;HRun=0;HaplotypeScore=0.6651;MQ=59.55;MQ0=0;MQRankSum=0.371;QD=12.16;ReadPosRankSum=0.932;SNPEFF_AMINO_ACID_CHANGE=H3079R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220355455_220355678;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    0/1:23,28:51:99:650,0,675
2    220356449    rs6747041    G    C    34.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    0/1:4,3:7:64.40:64,0,146
2    220356632    rs6747090    C    T    187.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=20.79;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    0/1:3,6:9:94.37:217,0,94
2    220356806    rs907146    C    T    1162.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,34:34:90.27:1195,90,0
2    220357042    .    C    T    459.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.611;DP=36;Dels=0.0;FS=1.48;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.017;QD=12.77;ReadPosRankSum=1.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    0/1:18,18:36:99:490,0,561
2    220357594    rs1078212    C    A    177.12    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.342;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.317;QD=10.42;ReadPosRankSum=-0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    0/1:10,7:17:99:207,0,213
2    220361070    rs5838740    TC    T    423.75    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=4.461;DB;DP=40;FS=1.271;HRun=4;HaplotypeScore=106.9939;IndelType=D;MQ=59.61;MQ0=0;MQRankSum=1.15;QD=10.59;ReadPosRankSum=1.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    0/1:24,16:40:99:463,0,759
2    220361265    rs2385541    A    G    290.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:323,24,0
2    220361344    rs2385540    G    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    220361435    rs1567489    C    G    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
2    220361486    rs2010592    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    220361590    rs11437065    T    TA    381.35    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=55.1994;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=0.551;QD=23.83;ReadPosRankSum=-1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    0/1:5,11:16:99:420,0,165
2    220362557    rs12474050    C    T    119.03    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.0;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    0/1:2,5:7:46.93:149,0,47
2    220362899    rs2029251    C    G    173.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265327    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
2    220366953    rs2385539    G    C    75.73    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.15;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475104    GT:AD:DP:GQ:PL    0/1:1,4:5:29.19:106,0,29
2    220371181    rs10932808    T    A    268.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435316    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:301,24,0
2    220379560    rs3731909    C    G    762.90    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.484;DB;DP=50;Dels=0.0;FS=5.03;HRun=0;HaplotypeScore=0.9916;MQ=59.54;MQ0=0;MQRankSum=-1.495;QD=15.26;ReadPosRankSum=0.247;SNPEFF_AMINO_ACID_CHANGE=A165;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220379052_220380028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347842    GT:AD:DP:GQ:PL    0/1:22,27:50:99:793,0,631
2    220380125    rs1872858    G    A    179.44    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=16.31;ReadPosRankSum=1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347842    GT:AD:DP:GQ:PL    0/1:5,6:11:99:209,0,164
2    220397811    rs6731344    T    C    231.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473709    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:265,24,0
2    220399951    rs2276643    A    G    437.87    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=28;Dels=0.0;FS=1.946;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.829;QD=15.64;ReadPosRankSum=-0.461;SNPEFF_AMINO_ACID_CHANGE=T486;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220399893_220400046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347842    GT:AD:DP:GQ:PL    0/1:13,15:28:99:468,0,401
2    220401732    rs3770237    G    A    121.96    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.258;QD=5.54;ReadPosRankSum=0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461395    GT:AD:DP:GQ:PL    0/1:16,6:22:99:152,0,435
2    220401751    rs2385538    G    A    146.10    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.715;DB;DP=24;Dels=0.0;FS=5.478;HRun=1;HaplotypeScore=0.9867;MQ=59.03;MQ0=0;MQRankSum=1.207;QD=6.09;ReadPosRankSum=0.889;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461395    GT:AD:DP:GQ:PL    0/1:17,7:24:99:176,0,541
2    220402665    rs6436153    C    A    140.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=2.341;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.03;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=P614Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220402655_220403494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347842    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,144
2    220402671    rs11689281    G    T    142.34    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=10.95;ReadPosRankSum=1.073;SNPEFF_AMINO_ACID_CHANGE=R616L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220402655_220403494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347842    GT:AD:DP:GQ:PL    0/1:7,6:13:99:172,0,185
2    220402680    rs11695248    T    C    147.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=12;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.29;ReadPosRankSum=0.869;SNPEFF_AMINO_ACID_CHANGE=V619A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220402655_220403494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347842    GT:AD:DP:GQ:PL    0/1:6,6:12:99:177,0,158
2    220404381    rs1976616    A    G    1560.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.58;MQ0=0;QD=29.45;SNPEFF_AMINO_ACID_CHANGE=Y522;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220404094_220405364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535926    GT:AD:DP:GQ:PL    1/1:0,52:53:99:1594,123,0
2    220404648    rs1043833    C    T    770.02    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.93;DB;DP=50;Dels=0.0;FS=5.189;HRun=0;HaplotypeScore=1.5317;MQ=59.07;MQ0=0;MQRankSum=0.774;QD=15.4;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=L433;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220404094_220405364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535926    GT:AD:DP:GQ:PL    0/1:22,28:50:99:800,0,727
2    220404726    rs1043832    G    A    419.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=30;Dels=0.0;FS=3.696;HRun=0;HaplotypeScore=0.9867;MQ=58.45;MQ0=0;MQRankSum=1.286;QD=13.99;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=H407;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220404094_220405364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535926    GT:AD:DP:GQ:PL    0/1:15,15:30:99:450,0,446
2    220405230    rs6436154    G    A    383.74    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.484;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.86;MQ0=0;MQRankSum=0.807;QD=16.68;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=H239;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220404094_220405364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535926    GT:AD:DP:GQ:PL    0/1:8,15:23:99:414,0,205
2    220405321    rs6436155    T    C    433.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.2;MQ0=0;QD=30.96;SNPEFF_AMINO_ACID_CHANGE=Q209R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220404094_220405364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535926    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:466,39,0
2    220406722    rs3731912    T    C    190.74    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=27.25;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=L168;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220406338_220406911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243776    GT:AD:DP:GQ:PL    0/1:1,6:7:11.43:221,0,11
2    220406944    rs7581251    G    A    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACCN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347842    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
2    220412256    rs8179770    T    C    6902.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=222;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=F151;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220412228_220412271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM198;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451952    GT:AD:DP:GQ:PL    1/1:0,222:222:99:6903,545,0
2    220414016    rs6436156    C    T    1432.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.13;SNPEFF_AMINO_ACID_CHANGE=D295;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220413874_220414076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM198;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344458    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1465,108,0
2    220415717    rs3731918    G    A    236.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265317    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
2    220415752    rs6745782    C    T    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265317    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    220416570    rs4672931    C    T    126.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265317    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
2    220416591    rs4672932    C    T    128.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265317    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    220416803    rs4672933    A    T    46.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265317    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
2    220416967    rs4672934    C    T    96.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265317    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
2    220419236    rs10932813    T    C    730.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=T1520;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220419196_220419462;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373876    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:764,57,0
2    220419339    rs10932814    T    C    555.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.63;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=Q1486R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220419196_220419462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373876    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:589,51,0
2    220420553    rs1056908    C    T    84.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472388    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    220420956    rs10932816    A    G    363.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.53;MQ0=0;QD=24.22;SNPEFF_AMINO_ACID_CHANGE=M1332T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220420742_220421014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265318    GT:AD:DP:GQ:PL    1/1:0,15:15:36.08:396,36,0
2    220421417    rs1983210    C    G    791.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.41;SNPEFF_AMINO_ACID_CHANGE=E1273D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220421300_220421445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265318    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:824,63,0
2    220427996    rs11904583    T    C    193.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=21.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:227,18,0
2    220428381    rs2303543    A    T    1501.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.78;MQ0=0;QD=30.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1535,120,0
2    220430203    rs1039898    C    T    2650.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=R310K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220429964_220430236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289656    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2683,211,0
2    220431458    rs62191614    A    C    188.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=20.95;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465589    GT:AD:DP:GQ:PL    0/1:3,6:9:84.31:219,0,84
2    220431631    rs1043537    G    T    536.91    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=1.223;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.647;QD=17.9;ReadPosRankSum=-1.558;SNPEFF_AMINO_ACID_CHANGE=A272;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220431552_220431848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289656    GT:AD:DP:GQ:PL    0/1:11,19:30:99:567,0,300
2    220431919    rs4674412    A    G    120.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=17.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465589    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:153,12,0
2    220432014    rs61732787    G    A    131.43    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.058;QD=8.76;ReadPosRankSum=0.405;SNPEFF_AMINO_ACID_CHANGE=F193;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220431995_220432297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289656    GT:AD:DP:GQ:PL    0/1:8,7:15:99:161,0,235
2    220432709    rs2292360    A    T    695.46    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.765;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9177;MQ=59.29;MQ0=0;MQRankSum=1.23;QD=10.7;ReadPosRankSum=0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465589    GT:AD:DP:GQ:PL    0/1:36,26:65:99:725,0,1030
2    220435034    rs10180675    A    G    1056.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=31.07;SNPEFF_AMINO_ACID_CHANGE=L307;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220434943_220436268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=OBSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265318    GT:AD:DP:GQ:PL    1/1:0,33:34:84.27:1089,84,0
2    220436973    rs11893842    A    G    138.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=13.8;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    0/1:4,6:10:99:168,0,128
2    220462640    rs681747    G    T    323.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=R1M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220462596_220462645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295641    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:357,27,0
2    220466199    rs620698    G    T    1029.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,31:31:78.26:1062,78,0
2    220471116    rs633200    C    G    414.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456857    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:448,36,0
2    220473355    rs673951    G    A    195.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.485;DB;DP=21;Dels=0.0;FS=1.949;HRun=0;HaplotypeScore=0.9999;MQ=58.89;MQ0=0;MQRankSum=0.56;QD=9.33;ReadPosRankSum=0.037;SNPEFF_AMINO_ACID_CHANGE=V531I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220473305_220473510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426736    GT:AD:DP:GQ:PL    0/1:14,7:21:99:226,0,466
2    220473653    rs675291    C    T    364.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459692    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:397,30,0
2    220476443    rs627530    C    T    1715.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_AMINO_ACID_CHANGE=S741F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220476326_220476556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456909    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1749,129,0
2    220476645    rs581547    T    C    587.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=27.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426736    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:620,51,0
2    220479312    rs624773    T    C    1016.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475396    GT:AD:DP:GQ:PL    1/1:0,28:28:84.24:1049,84,0
2    220480246    rs111415476    C    CAGAG    604.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=28.7314;IndelType=I;MQ=56.19;MQ0=0;QD=75.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495941    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:647,24,0
2    220480363    rs116451129    G    T    105.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.04;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495941    GT:AD:DP:GQ:PL    0/1:3,4:7:99:135,0,103
2    220480639    rs640807    T    C    421.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495941    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:454,33,0
2    220480693    rs665845    G    C    800.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495941    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:833,63,0
2    220494118    rs597306    A    C    343.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=57.84;MQ0=0;QD=26.45;SNPEFF_AMINO_ACID_CHANGE=H157P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220493866_220494143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273063    GT:AD:DP:GQ:PL    1/1:0,13:13:33.07:377,33,0
2    220494604    rs3214742    AG    A    88.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=24.4993;IndelType=D;MQ=56.04;MQ0=0;QD=14.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,6:6:15:130,15,0
2    220494859    rs143751613    T    C    163.95    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=1.6553;MQ=58.2;MQ0=0;MQRankSum=-0.555;QD=12.61;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=L226P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220494794_220495074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273063    GT:AD:DP:GQ:PL    0/1:6,7:13:99:194,0,174
2    220495167    rs612078    A    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535056    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
2    220497040    rs41272707    G    A    490.60    PASS    AB=0.174;AC=1;AF=0.50;AN=2;BaseQRankSum=1.388;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=1.03;QD=21.33;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=R141;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220496984_220497164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413743    GT:AD:DP:GQ:PL    0/1:4,19:23:99:521,0,100
2    220500423    rs589767    A    G    231.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_AMINO_ACID_CHANGE=E667;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220500395_220500613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317151    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:264,21,0
2    220500426    rs639214    A    G    202.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.98;SNPEFF_AMINO_ACID_CHANGE=A668;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220500395_220500613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317151    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:236,21,0
2    220502137    rs621515    C    T    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413743    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    220502367    rs635311    A    C    1750.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=58.66;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=D867A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220502303_220502533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317151    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1783,138,0
2    220505265    rs684428    T    C    1782.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=59.56;MQ0=0;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=L1131;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_220505152_220505321;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317151    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1816,138,0
2    221341460    rs75798452    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC019051.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410164    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    221341871    rs4273207    C    A    260.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC067956.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414512    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:293,21,0
2    222301357    rs3213844    T    C    453.15    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=34;Dels=0.0;FS=3.128;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.017;QD=13.33;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281821    GT:AD:DP:GQ:PL    0/1:18,16:34:99:483,0,602
2    222320427    rs2288627    G    A    184.58    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.144;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=10.86;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443796    GT:AD:DP:GQ:PL    0/1:9,8:17:99:215,0,320
2    222384480    rs2710511    A    C    434.33    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=34;Dels=0.0;FS=3.436;HRun=1;HaplotypeScore=0.7887;MQ=59.45;MQ0=0;MQRankSum=0.209;QD=12.77;ReadPosRankSum=-1.804;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281821    GT:AD:DP:GQ:PL    0/1:20,14:34:99:464,0,525
2    223066017    rs3832105    A    AC    730.80    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.275;DB;DP=60;FS=7.686;HRun=8;HaplotypeScore=135.4724;IndelType=I;MQ=60.34;MQ0=0;MQRankSum=0.783;QD=12.18;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409551    GT:AD:DP:GQ:PL    0/1:33,27:60:99:770,0,572
2    223096709    rs1965791    G    C    75.77    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.453;QD=4.74;ReadPosRankSum=-0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336840    GT:AD:DP:GQ:PL    0/1:11,5:16:99:106,0,403
2    223158652    rs10712898    GT    G    380.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=27.2949;IndelType=D;MQ=60.98;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258387    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:422,33,0
2    223161889    rs12623857    A    G    135.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.573;QD=12.34;ReadPosRankSum=-0.573;SNPEFF_AMINO_ACID_CHANGE=G43;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_223161697_223161932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258387    GT:AD:DP:GQ:PL    0/1:4,6:11:30.32:166,0,30
2    223423362    rs4674664    A    G    915.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=P315;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_223423066_223425667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGPP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321276    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:949,75,0
2    223436402    rs3768973    C    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536361    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    223436607    rs7185    C    T    1349.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=V486I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_223436464_223436741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536361    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1383,102,0
2    223436860    rs3768976    A    G    138.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-2.148;QD=13.87;ReadPosRankSum=-2.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281828    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,179
2    223489249    rs35270022    GT    G    157.16    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=11;FS=4.771;HRun=3;HaplotypeScore=33.2032;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=14.29;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281828    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,103
2    223489293    rs2290031    C    T    61.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.79;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281828    GT:AD:DP:GQ:PL    0/1:4,3:7:91.50:92,0,138
2    223493435    rs2019357    G    A    343.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=55.21;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281828    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:377,30,0
2    223498167    rs7340227    T    C    69.43    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=0.727;QD=17.36;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281828    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:99,0,30
2    223499077    rs13410038    C    T    216.11    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.494;DB;DP=42;Dels=0.0;FS=1.79;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=5.15;ReadPosRankSum=0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281828    GT:AD:DP:GQ:PL    0/1:33,9:42:99:246,0,1029
2    223511751    rs11695525    T    C    749.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.544;DB;DP=45;Dels=0.0;FS=1.204;HRun=0;HaplotypeScore=0.9665;MQ=58.76;MQ0=0;MQRankSum=0.822;QD=16.66;ReadPosRankSum=-0.846;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281828    GT:AD:DP:GQ:PL    0/1:18,27:45:99:780,0,567
2    223558890    rs7592038    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOGAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446656    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    223559089    rs1868024    T    C    1164.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=S163P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_223559081_223559255;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOGAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446656    GT:AD:DP:GQ:PL    1/1:0,34:35:96.30:1197,96,0
2    223780921    rs12623448    G    A    112    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357430    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:144,12,0
2    223781017    rs143383460    AT    A    460.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=9;HaplotypeScore=113.7804;IndelType=D;MQ=60.0;MQ0=0;QD=16.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357430    GT:AD:DP:GQ:PL    1/1:14,14:28:64.96:502,65,0
2    223784068    rs2119157    T    G    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463813    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
2    223785740    rs6756323    A    G    324.09    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.975;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=1.185;QD=10.45;ReadPosRankSum=-0.603;SNPEFF_AMINO_ACID_CHANGE=A23;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_223785672_223785786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421680    GT:AD:DP:GQ:PL    0/1:17,14:31:99:354,0,507
2    223785846    rs6728234    G    A    968.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463813    GT:AD:DP:GQ:PL    1/1:0,25:25:75.22:1002,75,0
2    223787272    rs112454943    G    GTCTC    704.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=38.0481;IndelType=I;MQ=58.91;MQ0=0;QD=58.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463813    GT:AD:DP:GQ:PL    1/1:3,7:12:30.10:747,30,0
2    223787559    rs11891410    G    A    891.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463813    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:924,66,0
2    223787691    rs10932978    G    A    334.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463813    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
2    223789080    rs1866661    C    G    320.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540115    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:354,27,0
2    223789526    rs7590226    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540115    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    223793471    rs1550419    C    T    52.59    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=4.78;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421680    GT:AD:DP:GQ:PL    0/1:8,3:11:82.58:83,0,287
2    223793480    rs1550420    C    T    487.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421680    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:520,39,0
2    223798141    rs6726737    A    C    114.23    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.423;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=6.01;ReadPosRankSum=-1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357430    GT:AD:DP:GQ:PL    0/1:12,7:19:99:144,0,404
2    223799207    rs935030    C    T    203.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474422    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:237,18,0
2    223806189    rs5838973    C    CT    364.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.157;DB;DP=56;FS=5.518;HRun=4;HaplotypeScore=428.3752;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=-0.542;QD=6.51;ReadPosRankSum=-0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357430    GT:AD:DP:GQ:PL    1/1:42,12:56:20.44:407,20,0
2    223806194    rs1550426    C    T    767.65    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.02;FS=0.0;HRun=9;HaplotypeScore=16.0691;MQ=56.49;MQ0=0;QD=14.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357430    GT:AD:DP:GQ:PL    1/1:0,52:53:66.20:801,66,0
2    223917629    rs3795886    C    T    1799.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=30.5;SNPEFF_AMINO_ACID_CHANGE=G27;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_223917526_223920355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNE4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281830    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1832,147,0
2    223917812    rs10201907    T    C    1056.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=P88;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_223917526_223920355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNE4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281830    GT:AD:DP:GQ:PL    1/1:0,33:33:90.26:1089,90,0
2    223917983    rs12621643    T    G    861.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=D145E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_223917526_223920355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNE4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281830    GT:AD:DP:GQ:PL    1/1:0,27:27:69.21:894,69,0
2    223918080    rs10189762    C    G    445.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=27.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488477    GT:AD:DP:GQ:PL    1/1:0,16:16:39.09:479,39,0
2    224266374    rs12617741    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079120.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408137    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    224629876    rs10644138    C    CCATCAT    509.14    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=91.1748;IndelType=I;MQ=52.84;MQ0=0;MQRankSum=-0.922;QD=26.8;ReadPosRankSum=-0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1S3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409375    GT:AD:DP:GQ:PL    0/1:13,4:19:99:548,0,526
2    224634763    rs627678    G    A    98.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1S3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423110    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:131,12,0
2    224640497    rs76026027    G    A    38.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=6.49;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1S3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396653    GT:AD:DP:GQ:PL    0/1:3,3:6:68.95:69,0,86
2    224743373    rs571111    C    T    466.68    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.02;QD=15.05;ReadPosRankSum=-1.719;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462702    GT:AD:DP:GQ:PL    0/1:15,16:31:99:497,0,459
2    224743591    rs602675    C    T    125.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233055    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
2    224744701    rs516849    A    G    560.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491453    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:594,45,0
2    224749578    rs60759568    T    TCTTC    474.49    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.179;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=199.3833;IndelType=I;MQ=45.0;MQ0=0;MQRankSum=1.61;QD=24.97;ReadPosRankSum=2.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233055    GT:AD:DP:GQ:PL    0/1:8,9:19:99:514,0,104
2    224758906    rs625150    C    T    747.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429915    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:781,60,0
2    224763816    rs530065    C    T    728.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483061    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:761,57,0
2    224765755    rs5839028    TA    T    179.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=11;HaplotypeScore=21.8729;IndelType=D;MQ=60.0;MQ0=0;QD=19.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233055    GT:AD:DP:GQ:PL    1/1:0,9:9:26.97:222,27,0
2    224765894    rs604990    G    A    1546.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233055    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1579,123,0
2    224770780    rs622896    C    T    287.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233055    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
2    224776821    rs544319    T    C    117.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.2;MQ0=0;QD=23.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233055    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:150,12,0
2    224777094    rs541712    T    C    769.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.11;MQ0=0;QD=24.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233055    GT:AD:DP:GQ:PL    1/1:0,32:32:72.17:802,72,0
2    224777105    rs113054269    G    GTGAT    1500.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=148.8557;IndelType=I;MQ=53.66;MQ0=0;QD=60.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233055    GT:AD:DP:GQ:PL    1/1:5,20:25:60.20:1542,60,0
2    224822043    rs3738960    C    G    54.06    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258383    GT:AD:DP:GQ:PL    0/1:3,4:7:84.05:84,0,106
2    224831891    rs6707243    G    A    324.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258383    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:358,27,0
2    224842150    rs7597833    T    C    335.45    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=1.721;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7845;MQ=59.38;MQ0=0;MQRankSum=-0.215;QD=11.18;ReadPosRankSum=1.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258405    GT:AD:DP:GQ:PL    0/1:19,11:30:99:365,0,693
2    225104088    rs10933049    A    C    995.17    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=3.351;DB;DP=63;Dels=0.0;FS=1.103;HRun=0;HaplotypeScore=1.3123;MQ=59.12;MQ0=0;MQRankSum=0.063;QD=15.8;ReadPosRankSum=-0.976;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC104802.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390698    GT:AD:DP:GQ:PL    0/1:25,38:63:99:1025,0,813
2    225244614    rs150364918    G    A    600.40    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.128;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.831;QD=9.68;ReadPosRankSum=-1.268;SNPEFF_AMINO_ACID_CHANGE=L348;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225243415_225244925;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM124B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409685    GT:AD:DP:GQ:PL    0/1:39,23:62:99:630,0,1212
2    225266667    rs3845837    G    A    38.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_225265754_225266802;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM124B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243806    GT:AD:DP:GQ:PL    0/1:3,3:6:68.47:68,0,99
2    225376032    rs6743816    G    C    703.95    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=12.35;ReadPosRankSum=0.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432260    GT:AD:DP:GQ:PL    0/1:34,23:57:99:734,0,1142
2    225378382    rs3830376    ATAAT    A    354.77    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=93.9816;IndelType=D;MQ=59.32;MQ0=0;MQRankSum=0.053;QD=17.74;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264414    GT:AD:DP:GQ:PL    0/1:11,9:20:99:394,0,593
2    225630233    rs1045654    C    T    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
2    225661982    rs113535092    AT    A    82.12    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=71.8554;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=-0.377;QD=5.87;ReadPosRankSum=-1.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:8,6:14:99:121,0,144
2    225664782    rs149917665    TAAA    T    525.09    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.694;DB;DP=34;FS=3.424;HRun=8;HaplotypeScore=138.7883;IndelType=D;MQ=53.57;MQ0=0;MQRankSum=-2.332;QD=15.44;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:19,15:34:99:564,0,1080
2    225665074    rs1560859    G    A    983.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1016,78,0
2    225668717    rs141021252    ATG    A    200.49    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.323;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=106.2951;IndelType=D;MQ=53.31;MQ0=1;MQRankSum=-0.718;QD=8.35;ReadPosRankSum=0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489831    GT:AD:DP:GQ:PL    0/1:15,7:22:99:240,0,367
2    225670901    rs4674941    G    C    1689.20    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.489;DB;DP=102;Dels=0.0;FS=4.94;HRun=0;HaplotypeScore=0.9983;MQ=59.77;MQ0=0;MQRankSum=-1.757;QD=16.56;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=I1246M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225670843_225670954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409592    GT:AD:DP:GQ:PL    0/1:50,52:102:99:1719,0,1634
2    225672460    rs12328236    G    A    1148.98    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.045;DB;DP=67;Dels=0.0;FS=0.947;HRun=0;HaplotypeScore=1.748;MQ=58.96;MQ0=0;MQRankSum=-2.273;QD=17.15;ReadPosRankSum=-0.676;SNPEFF_AMINO_ACID_CHANGE=Y1203;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225672385_225672501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409592    GT:AD:DP:GQ:PL    0/1:30,36:67:99:1179,0,916
2    225681554    rs13406583    G    C    248.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.134;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9509;MQ=57.97;MQ0=0;MQRankSum=0.669;QD=10.79;ReadPosRankSum=1.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:11,11:22:99:278,0,369
2    225684166    rs7572725    A    G    1318.75    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=3.211;DB;DP=113;Dels=0.0;FS=2.66;HRun=0;HaplotypeScore=1.8773;MQ=59.8;MQ0=0;MQRankSum=-0.332;QD=11.67;ReadPosRankSum=-0.955;SNPEFF_AMINO_ACID_CHANGE=L1082;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225684163_225684246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409592    GT:AD:DP:GQ:PL    0/1:62,51:113:99:1349,0,1961
2    225688041    rs13405571    A    G    87.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=14.55;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:2,4:6:62.60:117,0,63
2    225688100    rs13431331    G    A    289.26    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=13.77;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:11,10:21:99:319,0,380
2    225695334    rs112856141    TG    T    677.47    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=4.647;DB;DP=60;FS=0.0;HRun=3;HaplotypeScore=150.668;IndelType=D;MQ=59.54;MQ0=0;MQRankSum=0.978;QD=11.29;ReadPosRankSum=-0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:36,24:60:99:717,0,1225
2    225699079    rs10177782    T    C    513.62    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.135;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.237;QD=19.75;ReadPosRankSum=-1.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472652    GT:AD:DP:GQ:PL    0/1:10,16:26:99:544,0,305
2    225702565    rs6724332    G    A    976.97    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.056;DB;DP=79;Dels=0.0;FS=3.411;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.301;QD=12.37;ReadPosRankSum=-0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:44,35:79:99:1007,0,1229
2    225709636    rs11682884    G    A    143.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=11.04;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:7,6:13:99:174,0,254
2    225709926    rs7577271    A    G    669.22    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.907;DB;DP=49;Dels=0.0;FS=2.722;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=1.103;QD=13.66;ReadPosRankSum=-1.742;SNPEFF_AMINO_ACID_CHANGE=S819;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225709920_225710041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409592    GT:AD:DP:GQ:PL    0/1:24,25:49:99:699,0,716
2    225719571    rs72305904    GCCAACCAA    G    379.16    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=177.971;IndelType=D;MQ=48.65;MQ0=0;MQRankSum=-1.635;QD=16.49;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:17,6:23:99:418,0,499
2    225719781    rs143611482    G    GACAC    1129.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.179;DB;DP=51;FS=0.0;HRun=0;HaplotypeScore=283.7891;IndelType=I;MQ=55.63;MQ0=0;MQRankSum=0.485;QD=22.15;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    1/1:28,16:51:24.10:1171,24,0
2    225727431    rs7589474    T    C    811.44    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=61;Dels=0.0;FS=2.3;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.067;QD=13.3;ReadPosRankSum=-0.377;SNPEFF_AMINO_ACID_CHANGE=Q539;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225727381_225727463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409592    GT:AD:DP:GQ:PL    0/1:31,30:61:99:841,0,874
2    225739574    rs10181328    C    T    162.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.733;QD=9.03;ReadPosRankSum=0.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:12,6:18:99:192,0,347
2    225740593    rs11891443    T    C    153.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.21;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:3,5:8:99:184,0,103
2    225750323    rs140249202    A    G    514.40    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.348;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.36;MQ0=0;MQRankSum=0.084;QD=17.15;ReadPosRankSum=0.963;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471810    GT:AD:DP:GQ:PL    0/1:13,17:30:99:544,0,425
2    225750348    rs11337772    TA    T    365.48    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.149;DB;DP=41;FS=0.0;HRun=9;HaplotypeScore=153.429;IndelType=D;MQ=60.53;MQ0=0;MQRankSum=0.548;QD=8.91;ReadPosRankSum=-0.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471810    GT:AD:DP:GQ:PL    0/1:22,19:41:99:405,0,575
2    225750753    rs10197805    T    C    1231.59    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.465;DB;DP=80;Dels=0.0;FS=1.018;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.587;QD=15.39;ReadPosRankSum=2.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471810    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1262,0,1228
2    225750861    rs2304336    C    T    1881.61    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=3.701;DB;DP=144;Dels=0.0;FS=1.321;HRun=0;HaplotypeScore=2.1565;MQ=60.0;MQ0=0;MQRankSum=0.79;QD=13.07;ReadPosRankSum=2.233;SNPEFF_AMINO_ACID_CHANGE=A171;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225750780_225750902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409592    GT:AD:DP:GQ:PL    0/1:76,68:144:99:1912,0,2079
2    225751256    rs147369864    TA    T    229.28    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=2.931;DB;DP=30;FS=0.0;HRun=13;HaplotypeScore=161.908;IndelType=D;MQ=59.59;MQ0=0;MQRankSum=-0.289;QD=7.64;ReadPosRankSum=-1.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:13,16:30:84.31:268,0,84
2    225751293    rs2304334    A    G    483.99    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=0.846;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.198;QD=22.0;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:7,15:22:99:514,0,223
2    225781241    rs62186350    G    C    76.66    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.13;MQ0=0;MQRankSum=-0.876;QD=8.52;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:5,4:9:99:107,0,155
2    225781249    rs62186351    C    G    104.08    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7321;MQ=36.64;MQ0=0;MQRankSum=-0.387;QD=9.46;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:6,5:11:99:134,0,182
2    225781670    rs13013616    T    C    72.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:105,9,0
2    225796112    rs17271574    G    A    87.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
2    225796151    rs9808089    C    A    91.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=7.64;ReadPosRankSum=-1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:8,4:12:99:122,0,293
2    225796458    rs35061287    ATC    A    715.51    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=5.93;DB;DP=51;FS=8.085;HRun=0;HaplotypeScore=154.5786;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=0.232;QD=14.03;ReadPosRankSum=0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    0/1:30,21:51:99:755,0,1386
2    225796610    rs10498171    A    T    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258390    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
2    225811581    rs13021295    T    A    1647.53    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=113;Dels=0.0;FS=10.671;HRun=1;HaplotypeScore=0.9947;MQ=59.6;MQ0=0;MQRankSum=1.364;QD=14.45;ReadPosRankSum=0.659;SNPEFF_AMINO_ACID_CHANGE=I30F;SNPEFF_CODON_CHANGE=Atc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225811564_225811782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409592    GT:AD:DP:GQ:PL    0/1:53,60:113:99:1678,0,1672
2    225811592    rs78257220    T    A    1802.63    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.824;DB;DP=110;Dels=0.0;FS=12.771;HRun=0;HaplotypeScore=3.6954;MQ=59.58;MQ0=0;MQRankSum=-0.97;QD=16.39;ReadPosRankSum=0.702;SNPEFF_AMINO_ACID_CHANGE=N26I;SNPEFF_CODON_CHANGE=aAc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_225811564_225811782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409592    GT:AD:DP:GQ:PL    0/1:51,59:110:99:1833,0,1628
2    226265719    rs10578238    CTGG    C    1652.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=144.9979;IndelType=D;MQ=59.26;MQ0=0;QD=50.07;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_2_226265364_226265759;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1486;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272907    GT:AD:DP:GQ:PL    1/1:1,32:33:96.33:1694,96,0
2    226273490    rs2048935    T    C    2647.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1486;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272907    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2680,196,0
2    226273689    rs2048936    T    C    4358.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.18;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=Y31;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_226273580_226273817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1486;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272907    GT:AD:DP:GQ:PL    1/1:0,125:125:99:4358,346,0
2    226447735    rs3828256    C    T    376.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.0;SNPEFF_AMINO_ACID_CHANGE=S534;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_226446657_226447751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1486;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272907    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:410,30,0
2    226447844    rs6436570    G    A    77.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=15.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1486;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272907    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:110,9,0
2    226491770    rs3748993    A    C    1661.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=T586P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_226491633_226491842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1486;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000272907    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1695,132,0
2    226516429    rs3791734    A    G    1792.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1486;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272907    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1825,144,0
2    227660544    rs1801278    C    T    1162.52    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.248;DB;DP=72;Dels=0.0;FS=1.951;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.156;QD=16.15;ReadPosRankSum=-0.191;SNPEFF_AMINO_ACID_CHANGE=G971R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227659705_227664475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305123    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1193,0,957
2    227662753    rs2234931    C    T    875.38    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.28;MQ0=0;MQRankSum=-0.042;QD=13.68;ReadPosRankSum=0.367;SNPEFF_AMINO_ACID_CHANGE=G234;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227659705_227664475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305123    GT:AD:DP:GQ:PL    0/1:31,33:64:99:905,0,872
2    227771389    rs978909    T    G    1785.76    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.087;DB;DP=122;Dels=0.0;FS=0.984;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=-0.591;QD=14.64;ReadPosRankSum=-0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341329    GT:AD:DP:GQ:PL    0/1:54,68:122:99:1816,0,1733
2    227773466    rs3820928    T    C    470.78    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.568;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=59.39;MQ0=0;MQRankSum=-0.319;QD=12.39;ReadPosRankSum=-0.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341329    GT:AD:DP:GQ:PL    0/1:20,18:38:99:501,0,646
2    227872182    rs2228557    G    A    3172.87    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=186;DS;Dels=0.0;FS=1.367;HRun=5;HaplotypeScore=1.8664;MQ=59.75;MQ0=0;MQRankSum=-1.935;QD=17.06;ReadPosRankSum=0.046;SNPEFF_AMINO_ACID_CHANGE=F1641;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227872041_227872304;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:77,109:186:99:3203,0,2340
2    227872995    rs2228555    T    C    223.74    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.855;QD=17.21;ReadPosRankSum=-0.817;SNPEFF_AMINO_ACID_CHANGE=V1513;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227872734_227873020;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:5,8:13:99:254,0,122
2    227873028    rs13419076    A    G    119.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.573;QD=13.33;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:3,6:9:99:150,0,103
2    227874957    rs4423583    C    T    357.79    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.611;DB;DP=37;Dels=0.0;FS=2.745;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-1.67;QD=9.67;ReadPosRankSum=0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:24,13:37:99:388,0,843
2    227877037    rs10188770    G    A    307.26    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.585;DB;DP=21;Dels=0.0;FS=6.043;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.743;QD=14.63;ReadPosRankSum=0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:8,13:21:99:337,0,244
2    227886773    rs3752895    A    G    1405.54    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=3.677;DB;DP=136;Dels=0.0;FS=0.687;HRun=4;HaplotypeScore=0.9665;MQ=59.52;MQ0=0;MQRankSum=0.9;QD=10.33;ReadPosRankSum=0.341;SNPEFF_AMINO_ACID_CHANGE=S1400P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227886764_227886889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:81,55:136:99:1436,0,2452
2    227886925    rs3752896    C    T    1382.19    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=6.39;DB;DP=94;Dels=0.0;FS=1.828;HRun=0;HaplotypeScore=0.9832;MQ=59.75;MQ0=0;MQRankSum=0.653;QD=14.7;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:43,51:94:99:1412,0,1303
2    227890283    rs2177596    A    T    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    227892428    rs10199655    T    C    457.94    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.289;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.376;QD=14.77;ReadPosRankSum=2.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:16,15:31:99:488,0,557
2    227892619    rs3817490    C    T    1027.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.697;DB;DP=81;Dels=0.0;FS=2.144;HRun=0;HaplotypeScore=1.5661;MQ=59.77;MQ0=0;MQRankSum=0.74;QD=12.69;ReadPosRankSum=1.249;SNPEFF_AMINO_ACID_CHANGE=P1360;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227892618_227892725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:40,40:81:99:1058,0,1081
2    227892720    rs2229813    C    T    318.58    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.877;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.339;QD=13.85;ReadPosRankSum=-0.092;SNPEFF_AMINO_ACID_CHANGE=V1327M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227892618_227892725;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:11,12:23:99:349,0,325
2    227895125    rs1917127    A    G    522.59    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.639;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.196;QD=12.75;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:21,20:41:99:553,0,735
2    227896652    rs13423714    C    G    58.94    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=17;Dels=0.0;FS=5.237;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=3.47;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:12,5:17:88.93:89,0,384
2    227896886    rs2229812    C    T    524.06    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.146;DB;DP=43;Dels=0.0;FS=4.36;HRun=3;HaplotypeScore=3.825;MQ=60.0;MQ0=0;MQRankSum=-1.373;QD=12.19;ReadPosRankSum=1.297;SNPEFF_AMINO_ACID_CHANGE=K1228;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227896864_227896992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:23,20:43:99:554,0,719
2    227896976    rs10203363    C    T    407.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.154;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.769;QD=15.68;ReadPosRankSum=-0.462;SNPEFF_AMINO_ACID_CHANGE=G1198;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227896864_227896992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:13,13:26:99:438,0,443
2    227906756    rs146777900    G    A    192.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.27;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=12.04;ReadPosRankSum=-1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:9,7:16:99:223,0,316
2    227912331    rs2272200    G    A    65.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.13;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:5,3:8:95.04:95,0,182
2    227914625    rs2272202    T    C    75.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.74;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,145
2    227914655    rs2272203    C    G    142.50    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=12.95;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:6,5:11:99:172,0,219
2    227914975    rs2251223    T    G    32.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.42;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:4,2:6:62.49:62,0,135
2    227915601    rs2272204    G    T    231.37    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.311;QD=12.85;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:10,8:18:99:261,0,315
2    227915832    rs1800517    G    A    874.24    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=66;Dels=0.0;FS=6.933;HRun=0;HaplotypeScore=0.9989;MQ=59.37;MQ0=0;MQRankSum=-0.599;QD=13.25;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=P1004L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227915693_227915874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:34,32:66:99:904,0,1000
2    227916039    rs2894626    T    C    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,73
2    227917240    rs3769644    C    G    149.84    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.159;QD=16.65;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:4,5:9:98.19:180,0,98
2    227920474    rs1320406    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:82,6,0
2    227922015    rs4566357    A    G    30.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.18;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:61,0,33
2    227922104    rs7567789    T    C    139.24    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.729;QD=15.47;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,103
2    227922109    rs7567796    T    A    147.18    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.387;QD=13.38;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:5,6:11:99:177,0,107
2    227922454    rs2141829    G    A    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,107
2    227922470    rs2141828    T    C    37.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:3,2:5:67.83:68,0,104
2    227923952    rs6436649    A    G    159.26    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=9.37;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:10,7:17:99:189,0,356
2    227925097    rs6436650    C    T    214.14    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.731;QD=21.41;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:3,7:10:81.37:244,0,81
2    227927189    rs35717623    GT    G    72.26    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=17;FS=0.0;HRun=13;HaplotypeScore=86.128;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=0.663;QD=4.25;ReadPosRankSum=0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:9,8:17:99:111,0,159
2    227942951    rs7588113    T    C    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
2    227947053    rs10187611    C    G    184.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:4,6:10:99:215,0,134
2    227954599    rs2229814    G    A    421.61    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.292;DB;DP=29;Dels=0.0;FS=6.451;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=2.18;QD=14.54;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=P482S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_227954584_227954673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:11,18:29:99:452,0,300
2    227966298    rs112618294    T    TA    79.76    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=14;FS=3.424;HRun=11;HaplotypeScore=62.2518;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=0.466;QD=5.7;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:9,5:14:99:119,0,106
2    227967330    rs1574391    C    G    33.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.8;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:3,2:5:63.98:64,0,100
2    227967601    rs11274738    ACAATATTTCAGCAATAGGGAAAG    A    2294.48    PASS    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=5.157;DB;DP=76;FS=5.545;HRun=0;HaplotypeScore=1295.3645;IndelType=D;MQ=53.07;MQ0=0;MQRankSum=-3.45;QD=30.19;ReadPosRankSum=-0.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:62,14:76:99:2334,0,7727
2    227967830    rs111939542    GA    G    325.01    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=3.174;DB;DP=46;FS=1.292;HRun=11;HaplotypeScore=150.5125;IndelType=D;MQ=58.82;MQ0=0;MQRankSum=2.332;QD=7.07;ReadPosRankSum=-0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:25,20:46:99:364,0,633
2    227973095    rs7600536    A    T    460.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.191;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.139;QD=18.43;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:10,15:25:99:491,0,349
2    227973410    rs55741079    C    A    581.64    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.816;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.712;QD=12.93;ReadPosRankSum=0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:26,19:45:99:612,0,889
2    227973623    rs12475686    A    G    182.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=13;Dels=0.0;FS=2.276;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=14.02;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:6,7:13:99:212,0,202
2    227974113    rs6436654    A    G    823.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.82;DB;DP=54;Dels=0.0;FS=8.297;HRun=0;HaplotypeScore=1.8835;MQ=59.57;MQ0=0;MQRankSum=0.432;QD=15.26;ReadPosRankSum=-0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:27,27:54:99:854,0,861
2    227974191    rs6436655    A    G    197.58    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.178;DB;DP=22;Dels=0.0;FS=4.801;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.036;QD=8.98;ReadPosRankSum=-1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:13,9:22:99:228,0,391
2    227979533    rs12465531    A    C    72.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.01;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329662    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,107
2    228102723    rs13424243    G    C    1514.66    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.439;DB;DP=154;Dels=0.0;FS=1.43;HRun=1;HaplotypeScore=0.9947;MQ=59.7;MQ0=0;MQRankSum=-0.278;QD=9.84;ReadPosRankSum=-0.002;SNPEFF_AMINO_ACID_CHANGE=G43R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228102684_228102740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    0/1:87,66:154:99:1545,0,2602
2    228102752    rs1882435    C    A    1679.71    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.831;DB;DP=102;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-2.077;QD=16.47;ReadPosRankSum=0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    0/1:42,60:102:99:1710,0,1283
2    228104760    rs7579991    C    T    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
2    228109347    rs4675159    A    G    163.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
2    228109626    rs11386485    T    TG    6855.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.713;DB;DP=183;FS=3.632;HRun=0;HaplotypeScore=467.674;IndelType=I;MQ=61.36;MQ0=0;MQRankSum=1.674;QD=37.46;ReadPosRankSum=1.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:7,176:183:99:6856,523,0
2    228109784    rs6750210    C    T    1935.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=37.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1968,144,0
2    228111435    rs10178458    T    C    2260.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=L141P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228111401_228111454;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2294,175,0
2    228111600    rs10168566    G    T    632.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:666,51,0
2    228111604    rs10168567    G    T    617.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:650,48,0
2    228111651    rs10192026    A    G    421.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
2    228112186    rs4321358    A    G    1298.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1331,105,0
2    228112890    rs6436668    G    A    168.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:201,15,0
2    228113175    rs6436669    A    G    1887.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=E162G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228113151_228113236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,55:56:99:1920,147,0
2    228116318    rs4675160    C    G    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    228118403    rs12621551    T    G    3026.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.72;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,82:82:99:3060,226,0
2    228118596    rs12694724    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
2    228118949    rs7559693    C    G    127.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.936;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7675;MQ=58.33;MQ0=0;MQRankSum=-0.545;QD=9.1;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    0/1:7,7:14:99:157,0,242
2    228121101    rs55703767    G    T    1334.06    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.679;DB;DP=108;Dels=0.0;FS=1.628;HRun=0;HaplotypeScore=1.7262;MQ=59.79;MQ0=0;MQRankSum=0.349;QD=12.35;ReadPosRankSum=-1.784;SNPEFF_AMINO_ACID_CHANGE=D326Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228121059_228121112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    0/1:60,48:108:99:1364,0,1939
2    228121147    rs10933172    T    G    1913.57    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DB;DP=137;Dels=0.0;FS=4.129;HRun=3;HaplotypeScore=1.5782;MQ=59.66;MQ0=0;MQRankSum=-0.783;QD=13.97;ReadPosRankSum=-0.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    0/1:64,73:137:99:1944,0,2030
2    228122606    rs12621020    T    C    38.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
2    228128540    rs10205042    C    T    668.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=L399;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228128491_228128660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:702,54,0
2    228135426    rs73993878    G    A    827.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.6;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=31.82;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:1,25:26:66.21:860,66,0
2    228145543    rs6436671    C    T    292.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
2    228146991    rs72371878    AATAT    A    239.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=58.4749;IndelType=D;MQ=55.43;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:1,5:8:21.05:281,21,0
2    228149107    rs6436672    A    G    533.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:567,42,0
2    228158418    rs7569636    T    C    1720.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487633    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1754,129,0
2    228158648    rs7608999    G    C    476.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487633    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:510,39,0
2    228159063    rs6436675    T    C    506.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304990    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:539,39,0
2    228159641    rs4675163    C    T    3845.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=57.41;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304990    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3845,286,0
2    228159660    rs35803812    GTT    G    2187.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.106;DB;DP=130;FS=1.797;HRun=16;HaplotypeScore=981.7787;IndelType=D;MQ=58.1;MQ0=0;MQRankSum=-0.908;QD=16.7;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304990    GT:AD:DP:GQ:PL    1/1:18,101:130:99:2230,234,0
2    228176357    rs4455148    T    G    87.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315699    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    228194570    rs6706656    G    A    1249.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304593    GT:AD:DP:GQ:PL    1/1:0,32:32:96.30:1283,96,0
2    228194639    rs36118365    T    TA    110.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=11;HaplotypeScore=11.2335;IndelType=I;MQ=62.13;MQ0=0;QD=22.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304593    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:152,15,0
2    228197368    rs4500938    A    G    3610.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418961    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3610,274,0
2    228197488    rs4444514    A    G    376.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=37.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418961    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
2    228204929    rs4420693    C    T    625.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304593    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:658,48,0
2    228204982    rs4442987    C    T    1140.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304593    GT:AD:DP:GQ:PL    1/1:0,37:37:90.29:1174,90,0
2    228211074    rs5003955    T    C    1923.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304593    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1956,165,0
2    228220288    rs56310237    A    G    943.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304593    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:977,72,0
2    228221725    rs74713223    A    G    3452.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DB;DP=101;Dels=0.0;FS=4.305;HRun=0;HaplotypeScore=5.8882;MQ=59.77;MQ0=0;MQRankSum=-0.787;QD=34.18;ReadPosRankSum=-1.697;SNPEFF_AMINO_ACID_CHANGE=L119;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228221702_228222097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456345    GT:AD:DP:GQ:PL    1/1:1,99:101:99:3453,217,0
2    228230727    rs75274263    G    A    605.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304568    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:638,48,0
2    228230945    rs76547437    G    A    1104.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9997;MQ=59.25;MQ0=0;QD=35.62;SNPEFF_AMINO_ACID_CHANGE=L89F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228230809_228230960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304568    GT:AD:DP:GQ:PL    1/1:0,31:31:90.27:1137,90,0
2    228356364    rs146603517    GT    G    1127.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.346;DB;DP=98;FS=0.0;HRun=15;HaplotypeScore=401.0405;IndelType=D;MQ=57.85;MQ0=0;MQRankSum=0.601;QD=11.51;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310078    GT:AD:DP:GQ:PL    1/1:34,56:98:99:1170,142,0
2    228373404    rs34676783    A    AT    756.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.193;DB;DP=53;FS=4.976;HRun=13;HaplotypeScore=209.6968;IndelType=I;MQ=59.8;MQ0=0;MQRankSum=-0.17;QD=14.27;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310078    GT:AD:DP:GQ:PL    1/1:18,35:53:9.80:797,10,0
2    228395648    rs12053112    C    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310078    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
2    228399480    rs7588620    T    C    513.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=27.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456594    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:547,42,0
2    228416498    rs7598597    C    T    218.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310078    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:252,18,0
2    228416712    rs13426457    A    G    2884.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5114;MQ=59.52;MQ0=0;QD=30.05;SNPEFF_AMINO_ACID_CHANGE=T432;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228416675_228416833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGFG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373671    GT:AD:DP:GQ:PL    1/1:0,96:96:99:2918,229,0
2    228418957    rs13382948    A    G    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310078    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    228476253    rs2138402    C    G    1799.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_AMINO_ACID_CHANGE=E104Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228474806_228476372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf83;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264387    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1832,135,0
2    228477814    rs7586824    G    C    191.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264387    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:224,18,0
2    228560800    rs11334205    GA    G    1805.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.0;HRun=8;HaplotypeScore=233.7828;IndelType=D;MQ=56.74;MQ0=0;QD=25.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC19A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409456    GT:AD:DP:GQ:PL    1/1:8,64:72:99:1848,192,0
2    228560834    rs79287293    C    CT    557.63    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.262;DB;DP=41;FS=6.145;HRun=3;HaplotypeScore=207.5224;IndelType=I;MQ=52.2;MQ0=0;MQRankSum=-4.064;QD=13.6;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC19A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409456    GT:AD:DP:GQ:PL    0/1:25,16:41:99:597,0,672
2    228563239    rs7602410    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC19A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409456    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    228734836    rs12464933    T    A    1442.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.92;MQ0=0;QD=32.06;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1476,111,0
2    228734956    rs12476836    G    A    1941.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=37.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1974,153,0
2    228735030    rs34877825    G    C    1825.73    SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=51.2;MQ0=0;MQRankSum=-1.155;QD=29.45;ReadPosRankSum=-0.808;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1859,125,0
2    228735034    rs78489887    A    G    1471.70    SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.969;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=51.33;MQ0=0;MQRankSum=-0.029;QD=24.53;ReadPosRankSum=-1.145;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1505,114,0
2    228735035    rs74953232    C    T    1535.97    SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.675;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=51.63;MQ0=0;MQRankSum=-1.562;QD=24.77;ReadPosRankSum=-1.221;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1569,117,0
2    228735140    rs34862621    T    C    3052.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=86;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=56.76;MQ0=0;MQRankSum=-1.128;QD=35.5;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:1,85:86:99:3086,203,0
2    228735186    rs61343551    T    C    3278.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.54;MQ0=0;QD=36.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3279,250,0
2    228735267    rs6737993    T    C    3127.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=30.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3161,235,0
2    228735299    rs66687055    A    G    2364.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.6;MQ0=0;QD=28.49;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2398,190,0
2    228735448    rs12477002    G    A    2021.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.312;QD=30.63;ReadPosRankSum=-0.892;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2055,120,0
2    228735732    rs10498223    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    228736313    rs12478068    G    T    233.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_228735770_228736445;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373666    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:266,21,0
2    228736527    rs12470042    A    G    261.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=29.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,9:9:24.03:295,24,0
2    228736608    rs10933219    C    T    36.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
2    228750239    rs4973445    G    T    372.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:406,33,0
2    228758456    rs35758334    C    A    758.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440997    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:791,60,0
2    228767618    rs2949014    T    C    118.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:151,12,0
2    228772168    rs13393365    T    C    99.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.4;ReadPosRankSum=-2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454999    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,142
2    228776938    rs3748863    A    G    204.15    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=17.01;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    0/1:4,8:12:99:234,0,130
2    228776996    rs3748862    T    C    361.33    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=11.66;ReadPosRankSum=-0.871;SNPEFF_AMINO_ACID_CHANGE=W334R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228776970_228777185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373666    GT:AD:DP:GQ:PL    0/1:15,16:31:99:391,0,534
2    228783364    rs4973494    A    C    167.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
2    228783479    rs1533960    C    A    171.81    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.592;DB;DP=25;Dels=0.0;FS=4.409;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=6.87;ReadPosRankSum=-1.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309931    GT:AD:DP:GQ:PL    0/1:17,8:25:99:202,0,503
2    228855866    rs16824283    G    C    1445.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.12;SNPEFF_AMINO_ACID_CHANGE=S1574R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_228855716_228855900;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1478,123,0
2    228973383    rs67714256    A    C    209.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
2    228973660    rs7561798    A    G    1630.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1664,129,0
2    228973723    rs35008305    C    CT    254.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.738;DB;DP=19;FS=0.0;HRun=12;HaplotypeScore=114.1679;IndelType=I;MQ=57.17;MQ0=0;MQRankSum=0.29;QD=13.4;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:7,12:19:14.24:296,14,0
2    228996470    rs4353645    A    G    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    228996637    rs4479423    G    A    879.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:913,69,0
2    228996650    rs4353646    A    G    1240.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=38.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,32:32:93.31:1273,93,0
2    228996672    rs4585022    G    A    1465.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.02;FS=0.0;HRun=3;HaplotypeScore=3.6282;MQ=59.01;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1499,120,0
2    228996995    rs5013548    C    T    128.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    228997009    rs66910205    C    T    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    229035357    rs79953909    T    A    680.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=27.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,25:25:63.17:714,63,0
2    229035442    rs4334483    A    T    197.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:231,18,0
2    229035509    rs4364010    C    T    77.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344657    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
2    230020507    rs17614185    A    G    323.27    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=38;Dels=0.0;FS=2.007;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=8.51;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354069    GT:AD:DP:GQ:PL    0/1:25,13:38:99:353,0,731
2    230271780    rs7562609    A    G    461.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341772    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:495,42,0
2    230282624    rs6760224    G    A    269.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341772    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:302,24,0
2    230411633    rs72985919    G    A    1175.33    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.816;DB;DP=86;Dels=0.0;FS=6.195;HRun=0;HaplotypeScore=1.5362;MQ=59.57;MQ0=0;MQRankSum=-1.413;QD=13.67;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341772    GT:AD:DP:GQ:PL    0/1:44,42:86:99:1205,0,1282
2    230453214    rs77640045    G    GA    415.96    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.292;DB;DP=23;FS=0.0;HRun=10;HaplotypeScore=72.6459;IndelType=I;MQ=57.97;MQ0=0;MQRankSum=0.839;QD=18.09;ReadPosRankSum=0.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341772    GT:AD:DP:GQ:PL    0/1:7,16:23:16.35:455,0,16
2    230652430    .    T    TA    96.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DP=10;FS=0.0;HRun=10;HaplotypeScore=50.1741;IndelType=I;MQ=57.66;MQ0=0;MQRankSum=-0.684;QD=9.7;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470302    GT:AD:DP:GQ:PL    0/1:5,5:10:49.88:136,0,50
2    230655733    rs722268    C    T    354.63    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.075;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.805;QD=11.44;ReadPosRankSum=1.764;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461189    GT:AD:DP:GQ:PL    0/1:19,12:31:99:385,0,669
2    230666898    rs10432554    A    G    180.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.191;QD=15.06;ReadPosRankSum=1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487178    GT:AD:DP:GQ:PL    0/1:6,6:12:99:211,0,175
2    230668968    rs4972915    G    A    543.43    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.047;DB;DP=42;Dels=0.0;FS=3.789;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=2.542;QD=12.94;ReadPosRankSum=-0.829;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479037    GT:AD:DP:GQ:PL    0/1:19,23:42:99:573,0,639
2    230723777    rs544480    G    C    421.25    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.853;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.012;QD=13.59;ReadPosRankSum=1.369;SNPEFF_AMINO_ACID_CHANGE=S204;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_230723488_230724290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283943    GT:AD:DP:GQ:PL    0/1:17,14:31:99:451,0,579
2    230744570    rs479492    C    T    235.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=23.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283943    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:268,21,0
2    230841074    rs499449    C    T    621.93    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.162;DB;DP=36;Dels=0.0;FS=5.059;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.381;QD=17.28;ReadPosRankSum=1.672;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283946    GT:AD:DP:GQ:PL    0/1:16,20:36:99:652,0,402
2    230875311    rs11675143    G    A    148.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.24;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283946    GT:AD:DP:GQ:PL    0/1:2,5:7:60.81:179,0,61
2    230914604    .    C    A    148.63    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.17;DP=69;Dels=0.0;FS=54.623;HRun=2;HaplotypeScore=5.0053;MQ=45.17;MQ0=0;MQRankSum=-3.695;QD=2.15;ReadPosRankSum=2.761;SNPEFF_AMINO_ACID_CHANGE=L92F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_230914477_230914620;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295190    GT:AD:DP:GQ:PL    0/1:31,38:69:99:179,0,835
2    231033633    rs5839361    A    ATTAATT    1079.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=124.9591;IndelType=I;MQ=41.41;MQ0=0;QD=77.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358662    GT:AD:DP:GQ:PL    1/1:0,9:14:41.50:1121,42,0
2    231050569    rs2114591    G    A    667.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258381    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:700,51,0
2    231050715    rs3948464    A    G    2514.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_AMINO_ACID_CHANGE=L127S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231050710_231050859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338556    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2548,202,0
2    231072709    rs1365776    C    T    661.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_AMINO_ACID_CHANGE=G299R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231072706_231072774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258381    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:695,54,0
2    231076032    rs3769837    G    T    126.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409815    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
2    231076289    rs3820974    T    G    1020.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409815    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1053,84,0
2    231077112    rs28930679    G    A    463.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_AMINO_ACID_CHANGE=A160V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231077111_231077145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455674    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:497,36,0
2    231077154    rs41309096    G    A    249.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416610    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
2    231077360    rs6749386    A    G    3860.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416610    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3861,292,0
2    231077725    rs1129411    A    G    1498.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.68;SNPEFF_AMINO_ACID_CHANGE=W112R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231077476_231077742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258381    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1532,114,0
2    231077911    rs7601190    A    C    128.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416610    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    231081384    rs7580900    T    C    321.73    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.588;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.849;QD=21.45;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258381    GT:AD:DP:GQ:PL    0/1:4,11:15:99:352,0,116
2    231081405    rs7580912    T    C    476.78    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=0.481;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.708;QD=19.07;ReadPosRankSum=0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258381    GT:AD:DP:GQ:PL    0/1:9,16:25:99:507,0,299
2    231103185    rs2278197    A    G    258.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.002;QD=17.27;ReadPosRankSum=-1.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473711    GT:AD:DP:GQ:PL    0/1:6,9:15:99:289,0,185
2    231106244    rs2288328    G    C    267.43    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.83;DB;DP=17;Dels=0.0;FS=2.702;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=15.73;ReadPosRankSum=0.049;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373645    GT:AD:DP:GQ:PL    0/1:7,10:17:99:297,0,211
2    231118186    rs3769840    G    A    312.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=58.95;MQ0=0;MQRankSum=0.456;QD=14.2;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343805    GT:AD:DP:GQ:PL    0/1:11,11:22:99:342,0,312
2    231120255    rs78438658    CG    C    154.16    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=1.463;DB;DP=38;FS=3.713;HRun=10;HaplotypeScore=151.7031;IndelType=D;MQ=59.64;MQ0=0;MQRankSum=-0.818;QD=4.06;ReadPosRankSum=0.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343805    GT:AD:DP:GQ:PL    0/1:27,11:38:99:193,0,536
2    231135662    rs56716621    A    G    374.55    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.403;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.155;QD=16.28;ReadPosRankSum=-0.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392044    GT:AD:DP:GQ:PL    0/1:10,13:23:99:405,0,350
2    231149108    rs4972946    G    A    1536.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9852;MQ=59.11;MQ0=0;QD=29.55;SNPEFF_AMINO_ACID_CHANGE=E385K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231149061_231149126;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350136    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1570,123,0
2    231157271    rs7602027    T    C    797.25    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=1.557;DB;DP=50;Dels=0.0;FS=1.334;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=0.506;QD=15.95;ReadPosRankSum=1.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476126    GT:AD:DP:GQ:PL    0/1:23,27:50:99:827,0,697
2    231157527    rs6739193    G    A    362.32    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.145;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.841;MQ=51.2;MQ0=0;MQRankSum=1.476;QD=11.69;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476126    GT:AD:DP:GQ:PL    0/1:17,14:31:99:392,0,498
2    231236505    rs12474823    C    T    1797.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243810    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1830,132,0
2    231248261    rs28497362    C    T    1643.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_AMINO_ACID_CHANGE=T225M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231248225_231248290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243810    GT:AD:DP:GQ:PL    1/1:0,46:47:99:1676,123,0
2    231258150    rs7590429    C    T    2043.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.633;DB;DP=72;Dels=0.0;FS=3.14;HRun=1;HaplotypeScore=2.2312;MQ=60.0;MQ0=0;MQRankSum=-0.99;QD=28.38;ReadPosRankSum=-0.94;SNPEFF_AMINO_ACID_CHANGE=P342S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231258129_231258176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396563    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2076,117,0
2    231258425    rs76585731    T    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462156    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    231265430    rs3731728    T    G    35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444636    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
2    231265443    rs3731729    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444636    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    231266272    rs115108138    A    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.68;MQ0=2;QD=11.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP140L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444636    GT:AD:DP:GQ:PL    1/1:0,6:6:9.02:100,9,0
2    231327291    rs1649863    A    G    344.90    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=17;Dels=0.0;FS=5.653;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.955;QD=20.29;ReadPosRankSum=1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470940    GT:AD:DP:GQ:PL    0/1:6,11:17:99:375,0,164
2    231328696    rs2306274    C    T    184.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=15.36;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466710    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,215
2    231328720    rs2306275    C    T    286.79    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.423;QD=22.06;ReadPosRankSum=0.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466710    GT:AD:DP:GQ:PL    0/1:3,10:13:89.82:317,0,90
2    231328728    rs2306276    C    T    374.49    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.623;QD=26.75;ReadPosRankSum=-0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466710    GT:AD:DP:GQ:PL    0/1:3,11:14:83.97:404,0,84
2    231330826    rs113262860    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466710    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
2    231331701    rs11393695    A    AG    778.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=137.4715;IndelType=I;MQ=54.95;MQ0=0;QD=40.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466710    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:820,57,0
2    231331706    rs2303609    C    T    271.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.096;QD=13.58;ReadPosRankSum=0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466710    GT:AD:DP:GQ:PL    0/1:10,10:20:99:302,0,338
2    231331799    rs1649869    T    C    3106.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9662;MQ=59.03;MQ0=0;MQRankSum=0.933;QD=34.14;ReadPosRankSum=1.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466710    GT:AD:DP:GQ:PL    1/1:1,90:91:99:3139,195,0
2    231331896    rs1050224    G    A    2859.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=S384;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231331835_231331930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409897    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2892,217,0
2    231333763    rs12724    A    G    1139.50    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.572;DB;DP=91;Dels=0.0;FS=0.844;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=0.362;QD=12.39;ReadPosRankSum=0.665;SNPEFF_AMINO_ACID_CHANGE=M398V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231333758_231333811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409897    GT:AD:DP:GQ:PL    0/1:49,42:91:99:1169,0,1424
2    231333834    rs1649873    G    A    1117.71    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.304;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.44;MQ0=0;MQRankSum=-0.205;QD=13.47;ReadPosRankSum=0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462751    GT:AD:DP:GQ:PL    0/1:42,41:83:99:1148,0,1251
2    231333852    rs1649874    A    C    1015.23    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.77;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.554;QD=14.5;ReadPosRankSum=0.618;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462751    GT:AD:DP:GQ:PL    0/1:36,34:70:99:1045,0,1068
2    231333890    rs1649875    C    T    565.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.441;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.41;QD=14.87;ReadPosRankSum=-0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462751    GT:AD:DP:GQ:PL    0/1:19,19:38:99:595,0,636
2    231334010    rs1649877    C    T    66.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.067;QD=8.3;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462751    GT:AD:DP:GQ:PL    0/1:2,6:8:63.73:96,0,64
2    231334011    rs1649878    A    G    66.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.572;QD=8.3;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462751    GT:AD:DP:GQ:PL    0/1:2,6:8:63.84:96,0,64
2    231334216    rs1051579    T    C    363.86    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.699;DB;DP=26;Dels=0.0;FS=6.085;HRun=0;HaplotypeScore=0.9973;MQ=59.11;MQ0=0;MQRankSum=1.609;QD=13.99;ReadPosRankSum=-1.972;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462751    GT:AD:DP:GQ:PL    0/1:11,15:26:99:394,0,349
2    231334299    rs1051580    G    A    186.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=20.69;ReadPosRankSum=-1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462751    GT:AD:DP:GQ:PL    0/1:3,6:9:99:216,0,100
2    231334504    rs139756804    AAAAG    A    308.54    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=65.705;IndelType=D;MQ=56.18;MQ0=0;MQRankSum=0.825;QD=23.73;ReadPosRankSum=1.239;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_231334494_231334568;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000341950    GT:AD:DP:GQ:PL    0/1:5,8:13:99:348,0,239
2    231334679    rs1678162    A    G    230.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.239;QD=19.2;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341950    GT:AD:DP:GQ:PL    0/1:4,8:12:99:260,0,132
2    231337960    rs1615190    C    T    701.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=31.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341950    GT:AD:DP:GQ:PL    1/1:0,22:22:60.16:735,60,0
2    231338211    rs1678169    T    G    846.31    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=1.482;DB;DP=45;Dels=0.0;FS=2.027;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=18.81;ReadPosRankSum=0.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341950    GT:AD:DP:GQ:PL    0/1:19,26:45:99:876,0,635
2    231358974    rs143929368    G    A    74.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264052    GT:AD:DP:GQ:PL    0/1:2,3:5:58.06:104,0,58
2    231359225    rs6759377    T    C    143.83    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.315;QD=6.25;ReadPosRankSum=1.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452345    GT:AD:DP:GQ:PL    0/1:17,6:23:99:174,0,556
2    231363252    rs34979917    TA    T    510.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=13;HaplotypeScore=96.2547;IndelType=D;MQ=58.73;MQ0=0;QD=15.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452345    GT:AD:DP:GQ:PL    1/1:5,26:32:76.56:553,77,0
2    231368897    rs6705605    G    T    745.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.208;DB;DP=54;Dels=0.0;FS=9.988;HRun=2;HaplotypeScore=1.7256;MQ=59.57;MQ0=0;MQRankSum=-0.138;QD=13.81;ReadPosRankSum=-0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264052    GT:AD:DP:GQ:PL    0/1:27,27:54:99:776,0,923
2    231375974    rs16827319    G    A    164.22    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=10.26;ReadPosRankSum=-1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409112    GT:AD:DP:GQ:PL    0/1:9,7:16:99:194,0,309
2    231406070    rs17275036    G    A    552.63    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.147;DB;DP=45;Dels=0.0;FS=2.527;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.942;QD=12.28;ReadPosRankSum=-1.828;SNPEFF_AMINO_ACID_CHANGE=A266T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231406016_231406087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414648    GT:AD:DP:GQ:PL    0/1:23,22:45:99:583,0,706
2    231406529    rs6728423    T    C    393.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340126    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:426,33,0
2    231406680    rs836237    T    C    1586.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_AMINO_ACID_CHANGE=M296T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231406607_231406750;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414648    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1620,123,0
2    231407519    rs6717269    C    T    1118.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=38.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340126    GT:AD:DP:GQ:PL    1/1:0,29:29:84.28:1152,84,0
2    231738168    rs2289235    G    A    602.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=27.4;SNPEFF_AMINO_ACID_CHANGE=G53S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231738132_231738272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326407    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:636,51,0
2    231738263    rs2289234    C    T    596.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_AMINO_ACID_CHANGE=F22;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231738132_231738272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409704    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:630,48,0
2    231738269    rs2289233    G    A    610.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=A24;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231738132_231738272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409704    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:644,48,0
2    231738318    rs3816150    T    C    376.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326407    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:410,33,0
2    231740276    rs2289231    A    G    1150.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326407    GT:AD:DP:GQ:PL    1/1:0,34:34:93.26:1184,93,0
2    231742864    rs62195287    G    A    119.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.295;QD=7.95;ReadPosRankSum=-2.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418408    GT:AD:DP:GQ:PL    0/1:9,6:15:99:149,0,252
2    231860838    rs2271369    C    T    107.58    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=13.45;ReadPosRankSum=0.322;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_231860836_231861249;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424440    GT:AD:DP:GQ:PL    0/1:3,5:8:99:138,0,104
2    231860848    rs6722863    A    G    334.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:367,30,0
2    231861032    rs72362780    TCAGCAGCCTAGCCCTGAATCCACACCA    T    5508.07    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=10.566;DB;DP=159;FS=0.65;HRun=0;HaplotypeScore=3439.4537;IndelType=D;MQ=57.85;MQ0=0;MQRankSum=1.32;QD=34.64;ReadPosRankSum=0.809;SNPEFF_AMINO_ACID_CHANGE=QQPSPESTP29-;SNPEFF_CODON_CHANGE=cagcagcctagccctgaatccacacca/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_2_231860949_231861065;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    0/1:88,71:159:99:5508,0,14163
2    231864529    rs6436986    A    G    325.96    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=18;Dels=0.0;FS=3.039;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.449;QD=18.11;ReadPosRankSum=-0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    0/1:7,11:18:99:356,0,245
2    231864600    rs7573039    T    C    173    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
2    231865018    rs13406394    A    G    42.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.17;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
2    231865047    rs3817173    T    C    96.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9983;MQ=57.28;MQ0=0;MQRankSum=0.937;QD=13.84;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    0/1:3,4:7:87.42:127,0,87
2    231865090    rs2271376    T    C    160.41    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=15;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-0.637;QD=10.69;ReadPosRankSum=1.099;SNPEFF_AMINO_ACID_CHANGE=I104T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_231865081_231865252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424440    GT:AD:DP:GQ:PL    0/1:8,7:15:99:190,0,255
2    231865269    rs2271375    G    T    323.32    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.669;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.328;QD=17.02;ReadPosRankSum=-1.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    0/1:7,12:19:99:353,0,163
2    231867177    rs11687462    A    G    74.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.75;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:105,0,28
2    231867220    rs10933364    A    G    125.37    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=15.67;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355662    GT:AD:DP:GQ:PL    0/1:3,5:8:95.79:155,0,96
2    231867658    rs2271371    C    T    143.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=14.39;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454918    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,150
2    231925825    rs115169600    T    C    136.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308696    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:169,15,0
2    231927569    rs3815844    G    T    74.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.98;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308696    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:105,0,68
2    231944373    rs2303353    A    T    63.81    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=16;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.793;QD=3.99;ReadPosRankSum=-1.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308696    GT:AD:DP:GQ:PL    0/1:11,5:16:93.81:94,0,412
2    231948178    rs906879    A    G    253.46    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=23.04;ReadPosRankSum=1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308696    GT:AD:DP:GQ:PL    0/1:3,8:11:86.87:283,0,87
2    231949946    rs2303357    G    A    67.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.51;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308696    GT:AD:DP:GQ:PL    0/1:6,3:9:97.61:98,0,197
2    231987955    rs7607338    C    A    117.97    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.59;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258400    GT:AD:DP:GQ:PL    0/1:1,4:5:22.75:148,0,23
2    232025952    rs35533383    T    TA    47.14    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=1.009;DB;DP=23;FS=0.0;HRun=14;HaplotypeScore=240.5502;IndelType=I;MQ=53.22;MQ0=0;MQRankSum=1.184;QD=2.05;ReadPosRankSum=-2.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308696    GT:AD:DP:GQ:PL    0/1:13,7:23:86.17:86,0,159
2    232029735    rs36227127    GATTTATATAT    G    418.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=170.1151;IndelType=D;MQ=45.65;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467792    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:461,36,0
2    232030301    rs6437003    C    T    85.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431051    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
2    232030510    rs2303351    C    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431051    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    232030555    rs2303350    G    A    141.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.72;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431051    GT:AD:DP:GQ:PL    0/1:4,5:9:99:171,0,140
2    232030861    rs2303349    A    G    56.46    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=5.13;ReadPosRankSum=0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431051    GT:AD:DP:GQ:PL    0/1:8,3:11:86.45:86,0,285
2    232035429    rs6749    G    A    484.66    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=31;Dels=0.0;FS=3.798;HRun=0;HaplotypeScore=1.8332;MQ=60.0;MQ0=0;MQRankSum=-0.889;QD=15.63;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409643    GT:AD:DP:GQ:PL    0/1:15,16:31:99:515,0,353
2    232072796    rs112353881    ATTTG    A    254.50    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=46.5023;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=-0.365;QD=25.45;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349938    GT:AD:DP:GQ:PL    0/1:4,6:10:99:294,0,282
2    232072912    rs11558174    T    C    632.32    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.063;DB;DP=54;Dels=0.0;FS=1.124;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.745;QD=11.71;ReadPosRankSum=-0.386;SNPEFF_AMINO_ACID_CHANGE=L42;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_232072840_232072965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349938    GT:AD:DP:GQ:PL    0/1:30,24:54:99:662,0,879
2    232073106    rs12465438    G    A    112.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=14.01;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349938    GT:AD:DP:GQ:PL    0/1:3,5:8:99:142,0,107
2    232135541    rs7604042    A    T    408.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349938    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:441,33,0
2    232225535    rs35889244    C    CG    294.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=33.1254;IndelType=I;MQ=57.66;MQ0=0;QD=29.4;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_232225466_232225536;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC9;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000359743    GT:AD:DP:GQ:PL    1/1:1,9:10:24.08:336,24,0
2    232317402    rs67356073    CA    C    2217.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=2;HaplotypeScore=180.3492;IndelType=D;MQ=60.68;MQ0=0;QD=36.35;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_232317092_232317521;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC017104.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000370380    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2259,175,0
2    232320856    rs59377947    G    GA    878.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=9;HaplotypeScore=63.743;IndelType=I;MQ=61.82;MQ0=0;QD=28.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC017104.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370380    GT:AD:DP:GQ:PL    1/1:3,28:31:84.22:921,84,0
2    232321956    rs7598759    C    T    1628.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=37.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC017104.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370380    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1662,123,0
2    232322779    rs6754426    G    A    111.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC017104.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370380    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:144,12,0
2    232322829    rs6712148    T    C    214.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC017104.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370380    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
2    232324780    rs2442322    A    G    604.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417652    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:637,48,0
2    232325692    rs12996154    A    C    539.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417652    GT:AD:DP:GQ:PL    1/1:0,17:17:51.13:572,51,0
2    232326801    rs2595514    A    T    2747.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.04;MQ0=0;QD=35.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484328    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2781,208,0
2    232326873    rs147456242    TTC    T    1574.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=161.6498;IndelType=D;MQ=60.9;MQ0=0;QD=43.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484328    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1617,108,0
2    232327691    rs6437018    A    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484328    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
2    232327707    rs6437019    T    C    73.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322723    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
2    232378231    rs6750795    T    C    1407.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=37.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313064    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1441,105,0
2    232389587    rs5839407    CCCT    C    243.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=32.5584;IndelType=D;MQ=51.77;MQ0=0;QD=40.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMUR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305141    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:286,18,0
2    232389744    rs3752762    A    G    1313.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=58.25;MQ0=0;QD=32.84;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMUR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305141    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1346,99,0
2    232390151    rs3752763    A    G    888.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMUR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305141    GT:AD:DP:GQ:PL    1/1:0,29:29:72.22:922,72,0
2    232390330    rs11693717    G    T    83.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMUR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305141    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
2    232458443    rs10933378    T    C    881.88    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.221;DB;DP=61;Dels=0.0;FS=1.063;HRun=2;HaplotypeScore=2.5221;MQ=60.0;MQ0=0;MQRankSum=0.478;QD=14.46;ReadPosRankSum=1.463;SNPEFF_AMINO_ACID_CHANGE=S261P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_232457575_232458994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313965    GT:AD:DP:GQ:PL    0/1:30,31:61:99:912,0,753
2    232597475    rs8165    T    C    39.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.57;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409772    GT:AD:DP:GQ:PL    0/1:4,2:6:69.42:69,0,93
2    232598065    rs838424    T    C    76.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428104    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
2    232653173    rs17271845    G    T    230.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.933;QD=12.79;ReadPosRankSum=0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350033    GT:AD:DP:GQ:PL    0/1:10,8:18:99:260,0,310
2    232653481    rs3830626    A    ACT    675.75    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.834;DB;DP=37;FS=3.952;HRun=0;HaplotypeScore=95.5945;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=-0.151;QD=18.26;ReadPosRankSum=1.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350033    GT:AD:DP:GQ:PL    0/1:22,15:37:99:715,0,618
2    232656297    rs41265109    G    A    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452375    GT:AD:DP:GQ:PL    0/1:2,2:4:60.47:67,0,60
2    232790053    rs5268    C    T    71.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.84;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295440    GT:AD:DP:GQ:PL    0/1:3,3:6:62.22:101,0,62
2    232888856    rs896990    T    G    244.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9913;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=15.31;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273009    GT:AD:DP:GQ:PL    0/1:8,8:16:99:275,0,276
2    233075234    rs72992373    C    T    96.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=9.64;ReadPosRankSum=-1.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273009    GT:AD:DP:GQ:PL    0/1:5,5:10:99:126,0,143
2    233103447    rs3748885    C    T    69.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.92;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273009    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,116
2    233127979    rs72998118    T    C    942.42    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.44;MQ0=0;MQRankSum=-0.017;QD=12.57;ReadPosRankSum=-0.434;SNPEFF_AMINO_ACID_CHANGE=H131;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233127917_233128150;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424049    GT:AD:DP:GQ:PL    0/1:36,39:75:99:972,0,975
2    233198373    rs3748967    G    A    55.83    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.2;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273009    GT:AD:DP:GQ:PL    0/1:5,4:9:85.83:86,0,136
2    233201328    rs3811578    A    G    136.37    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.96;MQ0=0;MQRankSum=0.466;QD=12.4;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=S882;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233201179_233201907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325385    GT:AD:DP:GQ:PL    0/1:5,6:11:99:166,0,161
2    233208534    rs6711186    T    C    106.22    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=8.85;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542873    GT:AD:DP:GQ:PL    0/1:7,5:12:99:136,0,188
2    233243660    rs2014448    T    C    3317.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.34;MQ0=1;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392027    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3317,262,0
2    233244586    rs2853374    C    G    1033.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=28.71;SNPEFF_AMINO_ACID_CHANGE=S199;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233244474_233244646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392027    GT:AD:DP:GQ:PL    1/1:0,36:36:87.23:1066,87,0
2    233244930    rs1048988    G    C    820.57    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.615;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=49.27;MQ0=2;MQRankSum=-5.399;QD=11.72;ReadPosRankSum=-0.821;SNPEFF_AMINO_ACID_CHANGE=R231P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233244896_233245030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392027    GT:AD:DP:GQ:PL    0/1:34,35:70:99:851,0,925
2    233245090    rs2260307    A    G    164.48    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.6;DB;DP=58;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7262;MQ=47.48;MQ0=5;MQRankSum=-1.358;QD=2.84;ReadPosRankSum=0.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474529    GT:AD:DP:GQ:PL    0/1:40,17:58:99:194,0,1315
2    233245141    rs2260309    T    C    118.38    QDFilter2    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.401;DB;DP=78;Dels=0.0;FS=3.184;HRun=0;HaplotypeScore=3.1091;MQ=47.48;MQ0=3;MQRankSum=-3.915;QD=1.52;ReadPosRankSum=-0.268;SNPEFF_AMINO_ACID_CHANGE=Y268;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233245130_233245202;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392027    GT:AD:DP:GQ:PL    0/1:57,20:78:99:148,0,1787
2    233245210    rs13034594    C    T    217.05    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.338;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=41.82;MQ0=1;MQRankSum=-2.941;QD=2.58;ReadPosRankSum=-0.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474529    GT:AD:DP:GQ:PL    0/1:62,21:84:99:247,0,1532
2    233245958    .    C    A    158.25    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.786;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=22.39;MQ0=8;MQRankSum=0.556;QD=4.95;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474529    GT:AD:DP:GQ:PL    0/1:22,10:32:99:188,0,261
2    233251534    rs73001992    C    A    206.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.852;DB;DP=20;Dels=0.0;FS=1.778;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.247;QD=10.32;ReadPosRankSum=-0.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392027    GT:AD:DP:GQ:PL    0/1:10,10:20:99:236,0,284
2    233271697    rs3830644    TAC    T    898.80    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=3.471;DB;DP=71;FS=2.095;HRun=0;HaplotypeScore=257.2516;IndelType=D;MQ=56.59;MQ0=0;MQRankSum=-0.736;QD=12.48;ReadPosRankSum=0.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295453    GT:AD:DP:GQ:PL    0/1:39,33:71:99:938,0,1357
2    233272162    rs2678517    G    A    213.77    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=13;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=16.44;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295453    GT:AD:DP:GQ:PL    0/1:5,8:13:99:244,0,172
2    233272453    rs147653632    C    T    346.24    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=19;Dels=0.0;FS=2.029;HRun=0;HaplotypeScore=0.0;MQ=46.67;MQ0=0;MQRankSum=-0.453;QD=18.22;ReadPosRankSum=-0.543;SNPEFF_AMINO_ACID_CHANGE=S150;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233272304_233272478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295453    GT:AD:DP:GQ:PL    0/1:8,11:19:99:376,0,178
2    233272528    rs6728119    G    T    275.44    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.326;DB;DP=25;Dels=0.0;FS=4.548;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.371;QD=11.02;ReadPosRankSum=-2.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295453    GT:AD:DP:GQ:PL    0/1:16,9:25:99:305,0,442
2    233272925    rs2678518    A    G    220.16    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.518;DB;DP=29;Dels=0.0;FS=9.348;HRun=4;HaplotypeScore=0.5784;MQ=52.15;MQ0=1;MQRankSum=-3.035;QD=7.59;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295453    GT:AD:DP:GQ:PL    0/1:17,12:29:99:250,0,517
2    233273244    rs17416141    C    A    31.05    QDFilter2    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.404;DB;DP=19;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=51.18;MQ0=3;MQRankSum=-2.691;QD=1.63;ReadPosRankSum=-0.942;SNPEFF_AMINO_ACID_CHANGE=L273M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233273211_233273283;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295453    GT:AD:DP:GQ:PL    0/1:13,6:19:61.04:61,0,452
2    233274145    rs2090543    G    C    107.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.25;MQ0=4;QD=13.4;SNPEFF_AMINO_ACID_CHANGE=T429;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233274042_233274158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295453    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:140,12,0
2    233310058    rs790043    C    T    95.13    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.91;MQ0=0;MQRankSum=-1.159;QD=10.57;ReadPosRankSum=-1.881;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DIS3L2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509197    GT:AD:DP:GQ:PL    0/1:5,4:9:99:125,0,150
2    233322875    rs2272421    C    T    750.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295463    GT:AD:DP:GQ:PL    1/1:0,25:27:63.16:783,63,0
2    233345249    rs1190432    C    A    526.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=27.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304546    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:560,45,0
2    233346381    rs11285283    GC    G    468.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=5;HaplotypeScore=56.0219;IndelType=D;MQ=58.55;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304546    GT:AD:DP:GQ:PL    1/1:1,15:16:45.13:511,45,0
2    233346662    rs909432    A    C    240.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.747;QD=30.0;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304546    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:273,21,0
2    233346851    rs1190430    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304546    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    233347919    rs6750085    C    G    138.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304546    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:171,12,0
2    233348851    rs41265123    C    G    576.58    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=4.719;DB;DP=40;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=1.8606;MQ=56.54;MQ0=0;MQRankSum=-0.083;QD=14.06;ReadPosRankSum=-0.579;SNPEFF_AMINO_ACID_CHANGE=E423Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233348711_233348933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECEL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304546    GT:AD:DP:GQ:PL    0/1:18,22:40:99:607,0,437
2    233349588    rs1529874    G    A    1645.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_AMINO_ACID_CHANGE=H328Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233349511_233349603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECEL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304546    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1679,132,0
2    233350000    rs2573246    C    G    339.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304546    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:373,27,0
2    233391965    rs4973537    A    G    275.66    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.646;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.71;MQ0=0;MQRankSum=-1.507;QD=9.19;ReadPosRankSum=1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258385    GT:AD:DP:GQ:PL    0/1:17,13:30:99:306,0,615
2    233392020    rs113930536    A    AAAAGAG    1225.37    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.547;DB;DP=70;FS=14.816;HRun=0;HaplotypeScore=460.8673;IndelType=I;MQ=53.11;MQ0=0;MQRankSum=-3.14;QD=17.26;ReadPosRankSum=-2.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258385    GT:AD:DP:GQ:PL    0/1:43,22:70:99:1264,0,2053
2    233395029    rs12463989    T    C    34.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.36;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449596    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:64,0,33
2    233396375    rs3762528    T    C    543.28    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.327;DB;DP=34;Dels=0.0;FS=3.873;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.472;QD=15.98;ReadPosRankSum=-1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412233    GT:AD:DP:GQ:PL    0/1:14,20:34:99:573,0,478
2    233398497    rs11385225    A    AG    245.85    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.586;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=48.2315;IndelType=I;MQ=57.23;MQ0=0;MQRankSum=-0.342;QD=14.46;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412233    GT:AD:DP:GQ:PL    0/1:10,7:17:99:285,0,369
2    233400074    rs2767    A    G    312.90    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.393;DB;DP=33;Dels=0.0;FS=4.847;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.131;QD=9.48;ReadPosRankSum=-0.917;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412233    GT:AD:DP:GQ:PL    0/1:21,12:33:99:343,0,715
2    233404294    rs11674608    C    G    168.99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.065;QD=12.07;ReadPosRankSum=-0.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258385    GT:AD:DP:GQ:PL    0/1:8,6:14:99:199,0,295
2    233404590    rs12996322    G    C    133.47    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=23;Dels=0.0;FS=11.467;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.097;QD=5.8;ReadPosRankSum=-0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258385    GT:AD:DP:GQ:PL    0/1:15,8:23:99:163,0,517
2    233407904    .    C    A    253.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.079;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.643;QD=12.68;ReadPosRankSum=-0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHRNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485094    GT:AD:DP:GQ:PL    0/1:10,10:20:99:284,0,288
2    233408220    rs10714586    AG    A    294.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=7;HaplotypeScore=94.8316;IndelType=D;MQ=57.43;MQ0=0;QD=21.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHRNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485094    GT:AD:DP:GQ:PL    1/1:3,11:14:33.07:337,33,0
2    233408239    rs2573206    C    G    212.67    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=14;Dels=0.0;FS=3.123;HRun=1;HaplotypeScore=0.9734;MQ=55.2;MQ0=0;MQRankSum=-0.225;QD=15.19;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHRNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485094    GT:AD:DP:GQ:PL    0/1:6,8:14:99:243,0,150
2    233408514    rs72991926    A    T    215.52    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=15.39;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHRNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485094    GT:AD:DP:GQ:PL    0/1:6,7:14:99:246,0,201
2    233410294    rs2099489    C    T    330.09    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.289;DB;DP=26;Dels=0.0;FS=1.77;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.135;QD=12.7;ReadPosRankSum=-0.283;SNPEFF_AMINO_ACID_CHANGE=R422;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233410253_233410426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHRNG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389492    GT:AD:DP:GQ:PL    0/1:12,14:26:99:360,0,324
2    233415978    rs11899983    T    C    1665.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6385;MQ=59.54;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHRNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389494    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1699,126,0
2    233421284    rs35324785    CT    C    4194.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;FS=0.0;HRun=4;HaplotypeScore=334.8364;IndelType=D;MQ=61.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258416    GT:AD:DP:GQ:PL    1/1:4,117:121:99:4194,352,0
2    233422390    rs1190439    G    A    247.97    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.152;QD=12.4;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463074    GT:AD:DP:GQ:PL    0/1:11,9:20:99:278,0,382
2    233428927    rs1656397    G    C    153.36    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=13.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258416    GT:AD:DP:GQ:PL    0/1:4,7:11:99:183,0,137
2    233498506    rs112941683    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_AMINO_ACID_CHANGE=A31V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233497938_233498716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264059    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    233498669    rs2276557    G    T    190.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.154;DB;DP=14;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=13.6;ReadPosRankSum=-0.91;SNPEFF_AMINO_ACID_CHANGE=P85;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233497938_233498716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264059    GT:AD:DP:GQ:PL    0/1:7,7:14:99:220,0,174
2    233536926    rs11684420    T    C    587.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264059    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:621,45,0
2    233537125    rs11550699    A    G    1652.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=K186R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233537019_233537153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264059    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1686,123,0
2    233641010    rs41266951    A    T    182.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=15.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463554    GT:AD:DP:GQ:PL    0/1:6,6:12:99:212,0,208
2    233641083    rs737027    G    C    790.11    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=38;Dels=0.0;FS=1.986;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.197;QD=20.79;ReadPosRankSum=-1.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463554    GT:AD:DP:GQ:PL    0/1:14,24:38:99:820,0,438
2    233651737    rs10714136    AT    A    141.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=22.1851;IndelType=D;MQ=57.28;MQ0=0;QD=20.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373563    GT:AD:DP:GQ:PL    1/1:1,6:7:18.04:184,18,0
2    233655236    rs13393621    A    G    95.38    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.68;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=7.34;ReadPosRankSum=-1.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424038    GT:AD:DP:GQ:PL    0/1:8,5:13:99:125,0,286
2    233660704    rs2305139    T    G    260.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.006;DB;DP=22;Dels=0.0;FS=3.222;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.263;QD=11.82;ReadPosRankSum=-0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410033    GT:AD:DP:GQ:PL    0/1:11,11:22:99:290,0,396
2    233671539    rs13401578    T    G    37.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.799;MQ=50.65;MQ0=0;MQRankSum=-1.368;QD=4.69;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373563    GT:AD:DP:GQ:PL    0/1:4,4:8:67.49:67,0,140
2    233681512    rs1078323    T    G    621.07    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.014;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=17.25;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482952    GT:AD:DP:GQ:PL    0/1:14,22:36:99:651,0,476
2    233684402    rs2305141    A    G    296.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423659    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:329,27,0
2    233684833    rs11689661    C    T    30.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.08;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423659    GT:AD:DP:GQ:PL    0/1:3,2:5:60.40:60,0,103
2    233708806    rs3816334    A    G    1241.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8154;MQ=60.0;MQ0=0;MQRankSum=-1.111;QD=31.03;ReadPosRankSum=1.644;SNPEFF_AMINO_ACID_CHANGE=T823A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233708722_233708965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452341    GT:AD:DP:GQ:PL    1/1:1,39:40:93.30:1274,93,0
2    233710713    rs4973054    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426102    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
2    233711987    rs12328140    G    A    527.22    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.127;QD=13.18;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426102    GT:AD:DP:GQ:PL    0/1:18,22:40:99:557,0,600
2    233712049    rs2305137    G    A    2164.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.93;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426102    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2197,163,0
2    233712226    rs74771761    CACA    C    1257.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=238.2135;IndelType=D;MQ=54.68;MQ0=0;QD=40.55;SNPEFF_AMINO_ACID_CHANGE=PQ1204P;SNPEFF_CODON_CHANGE=ccacag/ccg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_2_233712058_233712281;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409196    GT:AD:DP:GQ:PL    1/1:0,30:31:84.25:1299,84,0
2    233712248    rs12328151    G    A    189.54    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.923;DB;DP=33;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=4.6982;MQ=44.8;MQ0=0;MQRankSum=-0.277;QD=5.74;ReadPosRankSum=-1.016;SNPEFF_AMINO_ACID_CHANGE=P1211;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233712058_233712281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409196    GT:AD:DP:GQ:PL    0/1:16,13:33:99:220,0,218
2    233712296    rs6437074    G    A    848.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.91;MQ0=0;QD=27.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426102    GT:AD:DP:GQ:PL    1/1:0,31:31:66.21:881,66,0
2    233721455    rs1947105    G    A    1671.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.13;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GIGYF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373563    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1704,126,0
2    233744021    rs709937    G    A    42.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331342    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:73,6,0
2    233744130    rs72202654    GCCC    G    558.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.882;DB;DP=30;FS=0.0;HRun=13;HaplotypeScore=230.8858;IndelType=D;MQ=53.87;MQ0=0;MQRankSum=-0.125;QD=18.61;ReadPosRankSum=1.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331342    GT:AD:DP:GQ:PL    1/1:7,14:30:24.25:600,24,0
2    233750074    rs2292725    C    T    471.79    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=58.48;MQ0=0;MQRankSum=0.37;QD=10.26;ReadPosRankSum=2.089;SNPEFF_AMINO_ACID_CHANGE=V174;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233750033_233750079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416114    GT:AD:DP:GQ:PL    0/1:28,18:46:99:502,0,700
2    233750118    rs2292726    G    A    373.34    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.39;MQ0=0;MQRankSum=-1.334;QD=12.87;ReadPosRankSum=-1.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:16,13:29:99:403,0,449
2    233752551    rs2250660    G    C    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458735    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
2    233752639    rs2250665    A    T    203.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458735    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
2    233757443    rs2166441    C    T    170.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409079    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
2    233757679    rs748002    G    A    704.58    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=1.005;DB;DP=58;Dels=0.0;FS=5.736;HRun=0;HaplotypeScore=0.6651;MQ=58.8;MQ0=0;MQRankSum=1.086;QD=12.15;ReadPosRankSum=-1.15;SNPEFF_AMINO_ACID_CHANGE=A247;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233757608_233757760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541023    GT:AD:DP:GQ:PL    0/1:33,25:58:99:735,0,927
2    233757697    rs895432    A    G    1786.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=I241;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233757608_233757760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541023    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1819,138,0
2    233759362    rs895431    G    C    455.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    1/1:0,15:16:36.12:489,36,0
2    233759695    rs938569    G    C    98.57    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.55;MQ0=0;MQRankSum=-0.306;QD=6.16;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:11,5:16:99:129,0,363
2    233785015    rs778354    G    A    1457.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_AMINO_ACID_CHANGE=P159;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233784994_233785295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541023    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1490,111,0
2    233791608    rs1878289    C    G    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,68
2    233791648    rs2592127    G    T    142.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.47;QD=14.28;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:5,5:10:99:173,0,164
2    233791988    rs2675959    T    A    165.89    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=16.59;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:3,7:10:92.61:196,0,93
2    233792038    rs62191809    G    T    126.92    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=21.15;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:1,5:6:20.53:157,0,21
2    233834761    rs4246648    A    T    72.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=5.16;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:8,6:14:99:102,0,283
2    233834785    rs4973587    A    T    227.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=26;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.397;QD=8.74;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:16,10:26:99:257,0,558
2    233834975    rs4973588    A    G    2006.67    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.235;DB;DP=158;Dels=0.0;FS=5.95;HRun=0;HaplotypeScore=1.7262;MQ=59.85;MQ0=0;MQRankSum=-0.878;QD=12.7;ReadPosRankSum=0.339;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_2_233834924_233835038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000541023    GT:AD:DP:GQ:PL    0/1:86,72:158:99:2037,0,2613
2    233839174    rs6437079    G    A    65.48    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.35;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264051    GT:AD:DP:GQ:PL    0/1:4,3:7:95.48:95,0,142
2    233880271    rs60652209    A    G    373.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC106876.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409905    GT:AD:DP:GQ:PL    1/1:0,13:13:36.08:406,36,0
2    233899126    rs2233391    C    A    758.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=H168N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_233898826_233899767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEU2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233840    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:791,63,0
2    233925491    rs4246649    A    G    91.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359570    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
2    233990412    rs55913569    C    T    448.49    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.96;MQ0=0;MQRankSum=1.171;QD=14.47;ReadPosRankSum=0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359570    GT:AD:DP:GQ:PL    0/1:14,17:31:99:478,0,410
2    233999081    rs11693862    A    G    959.24    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=56;Dels=0.0;FS=1.229;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=17.13;ReadPosRankSum=0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422935    GT:AD:DP:GQ:PL    0/1:25,31:56:99:989,0,798
2    233999201    rs11682791    G    A    172.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=19.17;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422935    GT:AD:DP:GQ:PL    0/1:3,6:9:93.36:203,0,93
2    233999230    rs58884803    C    G    71.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=11.98;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422935    GT:AD:DP:GQ:PL    0/1:2,4:6:63.31:102,0,63
2    234070171    rs28605534    G    C    73.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.29;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359570    GT:AD:DP:GQ:PL    0/1:3,3:6:89.37:104,0,89
2    234070190    rs28609111    G    A    93.57    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=7.8;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359570    GT:AD:DP:GQ:PL    0/1:7,5:12:99:124,0,239
2    234070233    rs28576692    T    C    388.92    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=24;Dels=0.0;FS=3.171;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=16.2;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359570    GT:AD:DP:GQ:PL    0/1:11,13:24:99:419,0,349
2    234072626    rs141642539    T    C    412.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359570    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:446,39,0
2    234078056    rs11386687    AC    A    203.69    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=17;FS=1.913;HRun=1;HaplotypeScore=41.6969;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=11.98;ReadPosRankSum=1.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493078    GT:AD:DP:GQ:PL    0/1:10,7:17:99:243,0,429
2    234078582    rs10754947    G    A    660.12    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=4.769;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.238;QD=13.2;ReadPosRankSum=-0.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493078    GT:AD:DP:GQ:PL    0/1:27,23:50:99:690,0,701
2    234091158    rs4571051    T    C    855.05    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.803;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.82;QD=10.82;ReadPosRankSum=-0.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493632    GT:AD:DP:GQ:PL    0/1:43,36:79:99:885,0,1338
2    234093035    rs6740918    G    A    1167.86    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=4.115;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.698;QD=15.17;ReadPosRankSum=-0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493632    GT:AD:DP:GQ:PL    0/1:38,39:77:99:1198,0,1006
2    234098802    rs3890760    T    C    34.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.61;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359570    GT:AD:DP:GQ:PL    0/1:2,2:4:64.45:64,0,72
2    234107070    rs7569827    G    A    401.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.773;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.735;QD=11.8;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359570    GT:AD:DP:GQ:PL    0/1:17,17:34:99:431,0,507
2    234172846    rs6708373    A    G    205.65    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.78;MQ0=0;MQRankSum=-0.204;QD=10.82;ReadPosRankSum=-1.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485623    GT:AD:DP:GQ:PL    0/1:9,10:19:99:236,0,290
2    234173503    rs12994997    G    A    871.77    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.588;DB;DP=57;Dels=0.0;FS=2.774;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.408;QD=15.29;ReadPosRankSum=1.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485623    GT:AD:DP:GQ:PL    0/1:27,30:57:99:902,0,771
2    234178453    rs12994971    C    T    124.58    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=15.57;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431917    GT:AD:DP:GQ:PL    0/1:3,5:8:99:155,0,101
2    234181593    rs2289475    G    C    332.41    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=0.959;DB;DP=41;Dels=0.0;FS=1.595;HRun=0;HaplotypeScore=2.8303;MQ=59.44;MQ0=0;MQRankSum=-0.369;QD=8.11;ReadPosRankSum=0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347464    GT:AD:DP:GQ:PL    0/1:29,12:41:99:362,0,883
2    234182240    rs2289472    C    T    240.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=58.55;MQ0=0;MQRankSum=0.788;QD=15.03;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334050    GT:AD:DP:GQ:PL    0/1:8,8:16:99:271,0,282
2    234183368    rs2241880    A    G    337.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.81;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.3;MQ0=0;MQRankSum=-0.603;QD=10.23;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=T137A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234183322_234183424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347464    GT:AD:DP:GQ:PL    0/1:20,12:33:99:368,0,570
2    234183468    rs2241879    G    A    105.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=11.74;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417017    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,175
2    234184417    rs3792109    G    A    1673.46    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=3.498;DB;DP=103;Dels=0.0;FS=1.634;HRun=0;HaplotypeScore=3.3196;MQ=59.55;MQ0=0;MQRankSum=0.142;QD=16.25;ReadPosRankSum=0.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417017    GT:AD:DP:GQ:PL    0/1:46,57:103:99:1703,0,1276
2    234186489    rs2241877    A    G    67.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=13.52;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417017    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:98,0,67
2    234197717    rs4663136    C    G    169.79    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=15.44;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334050    GT:AD:DP:GQ:PL    0/1:5,6:11:99:200,0,154
2    234227523    rs2304777    A    G    527.66    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=52;Dels=0.0;FS=3.858;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.145;QD=10.15;ReadPosRankSum=1.688;SNPEFF_AMINO_ACID_CHANGE=H88R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234227397_234227650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415974    GT:AD:DP:GQ:PL    0/1:31,21:52:99:558,0,1044
2    234227693    rs2304776    C    T    235.27    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.511;DB;DP=20;Dels=0.0;FS=4.665;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.204;QD=11.76;ReadPosRankSum=1.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415974    GT:AD:DP:GQ:PL    0/1:11,9:20:99:265,0,288
2    234227936    rs34882880    T    TG    269.46    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=14;FS=11.139;HRun=5;HaplotypeScore=28.9402;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=-0.849;QD=19.25;ReadPosRankSum=1.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415974    GT:AD:DP:GQ:PL    0/1:6,8:14:89.92:308,0,90
2    234235749    rs2304774    G    C    1532.92    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=3.385;DB;DP=117;Dels=0.0;FS=4.171;HRun=1;HaplotypeScore=3.9302;MQ=59.45;MQ0=0;MQRankSum=-0.123;QD=13.1;ReadPosRankSum=-0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462487    GT:AD:DP:GQ:PL    0/1:58,59:117:99:1563,0,1656
2    234238254    rs745498    T    G    472.13    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=4.351;DB;DP=47;Dels=0.0;FS=6.289;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.605;QD=10.05;ReadPosRankSum=0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447536    GT:AD:DP:GQ:PL    0/1:30,17:47:99:502,0,1069
2    234247627    rs2241874    T    C    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.72;QD=5.82;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252857    GT:AD:DP:GQ:PL    0/1:4,2:6:64.93:65,0,150
2    234255547    rs1046974    G    A    502.93    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=36;Dels=0.0;FS=2.351;HRun=0;HaplotypeScore=0.9665;MQ=59.36;MQ0=0;MQRankSum=-0.116;QD=13.97;ReadPosRankSum=-0.05;SNPEFF_AMINO_ACID_CHANGE=V403I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234255448_234255701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252857    GT:AD:DP:GQ:PL    0/1:19,17:36:99:533,0,643
2    234294561    rs3075537    T    TTC    1490.73    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.622;DB;DP=53;FS=1.107;HRun=0;HaplotypeScore=142.2196;IndelType=I;MQ=60.41;MQ0=0;MQRankSum=-1.16;QD=28.13;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264057    GT:AD:DP:GQ:PL    0/1:24,29:53:99:1530,0,808
2    234294791    rs838716    G    C    88.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264057    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    234297156    rs838719    T    C    78.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=7.87;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264057    GT:AD:DP:GQ:PL    0/1:6,4:10:99:109,0,220
2    234346660    rs2242102    G    A    68.23    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.53;ReadPosRankSum=1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427930    GT:AD:DP:GQ:PL    0/1:5,3:8:98.23:98,0,176
2    234347091    rs3214826    TA    T    272.02    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=2.147;DB;DP=31;FS=3.9;HRun=11;HaplotypeScore=92.709;IndelType=D;MQ=60.65;MQ0=0;MQRankSum=-0.173;QD=8.77;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427930    GT:AD:DP:GQ:PL    0/1:14,17:31:99:311,0,268
2    234354245    rs2305542    G    A    679.72    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=3.326;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.892;QD=18.88;ReadPosRankSum=0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474488    GT:AD:DP:GQ:PL    0/1:14,22:36:99:710,0,372
2    234357496    rs56336977    C    T    71.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264057    GT:AD:DP:GQ:PL    0/1:2,3:5:64.58:101,0,65
2    234359375    rs72980361    A    G    114.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.09;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465569    GT:AD:DP:GQ:PL    0/1:2,4:6:63.23:145,0,63
2    234368821    rs2290464    T    C    684.15    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=47;Dels=0.0;FS=7.34;HRun=0;HaplotypeScore=0.6651;MQ=59.51;MQ0=0;MQRankSum=0.683;QD=14.56;ReadPosRankSum=0.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471764    GT:AD:DP:GQ:PL    0/1:19,28:47:99:714,0,613
2    234371351    rs2228939    G    A    1672.10    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=130;Dels=0.0;FS=3.41;HRun=0;HaplotypeScore=4.5604;MQ=59.32;MQ0=0;MQRankSum=-0.404;QD=12.86;ReadPosRankSum=1.036;SNPEFF_AMINO_ACID_CHANGE=T1008;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234371289_234371381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409813    GT:AD:DP:GQ:PL    0/1:69,61:130:99:1702,0,1945
2    234372985    rs2242098    A    C    202.31    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.675;DB;DP=21;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.888;QD=9.63;ReadPosRankSum=-0.959;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471764    GT:AD:DP:GQ:PL    0/1:12,9:21:99:232,0,368
2    234394487    rs1048603    G    A    606.28    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.09;MQ0=0;MQRankSum=0.644;QD=11.89;ReadPosRankSum=0.861;SNPEFF_AMINO_ACID_CHANGE=R1111C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234394413_234394623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251722    GT:AD:DP:GQ:PL    0/1:30,21:51:99:636,0,842
2    234396566    rs10929178    G    C    212.56    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=13.28;ReadPosRankSum=0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409945    GT:AD:DP:GQ:PL    0/1:7,9:16:99:243,0,153
2    234405374    rs2602386    A    C    568.78    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=36;Dels=0.0;FS=10.571;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=15.8;ReadPosRankSum=-0.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483216    GT:AD:DP:GQ:PL    0/1:19,17:36:99:599,0,615
2    234433081    rs6746234    G    A    580.36    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=5.034;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.46;MQ0=0;MQRankSum=0.308;QD=13.5;ReadPosRankSum=0.997;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485943    GT:AD:DP:GQ:PL    0/1:25,18:43:99:610,0,706
2    234438246    rs78486600    C    CT    542.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=26.7617;IndelType=I;MQ=60.0;MQ0=0;QD=41.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251722    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:585,39,0
2    234438354    rs12692193    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251722    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
2    234442437    rs11332355    CA    C    481.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=11;HaplotypeScore=69.5303;IndelType=D;MQ=60.4;MQ0=0;QD=17.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251722    GT:AD:DP:GQ:PL    1/1:5,21:27:64.96:523,65,0
2    234449316    rs2167884    G    A    4458.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8305;MQ=59.65;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=L387;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234449308_234449412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251722    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4458,325,0
2    234449462    rs1545525    T    C    2851.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.4;MQ0=0;QD=37.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435959    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2884,214,0
2    234450822    rs1901812    T    C    107.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435959    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:140,12,0
2    234457900    rs3965793    T    A    421.46    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=43;Dels=0.0;FS=1.298;HRun=1;HaplotypeScore=1.6483;MQ=59.03;MQ0=0;MQRankSum=-0.146;QD=9.8;ReadPosRankSum=-0.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251722    GT:AD:DP:GQ:PL    0/1:25,18:43:99:451,0,713
2    234460388    rs4663698    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427947    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
2    234463310    rs190552980    G    A    354.13    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=22.13;ReadPosRankSum=-0.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484528    GT:AD:DP:GQ:PL    0/1:5,11:16:99:384,0,164
2    234469664    rs6753062    T    C    1731.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=I95V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234469389_234469679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443711    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1764,129,0
2    234469974    rs11690315    G    C    99.36    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251722    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:132,12,0
2    234526794    rs1042591    T    G    1723.60    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.787;DB;DP=147;Dels=0.0;FS=1.312;HRun=1;HaplotypeScore=3.8651;MQ=58.17;MQ0=0;MQRankSum=-1.307;QD=11.73;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=L147;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234526291_234527208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373450    GT:AD:DP:GQ:PL    0/1:83,64:147:99:1754,0,2688
2    234590527    rs7586110    T    G    356.73    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.166;DB;DP=38;Dels=0.0;FS=1.742;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.06;QD=9.39;ReadPosRankSum=1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344644    GT:AD:DP:GQ:PL    0/1:23,15:38:99:387,0,732
2    234590616    rs7577677    C    A    653.40    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.812;DB;DP=63;Dels=0.0;FS=1.008;HRun=0;HaplotypeScore=2.8135;MQ=59.63;MQ0=0;MQRankSum=0.694;QD=10.37;ReadPosRankSum=0.738;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234590584_234591438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373426    GT:AD:DP:GQ:PL    0/1:35,27:63:99:683,0,1131
2    234590970    rs17868323    T    G    1024.60    SnpCluster    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.847;DB;DP=108;Dels=0.0;FS=9.541;HRun=1;HaplotypeScore=0.5784;MQ=55.34;MQ0=2;MQRankSum=-3.411;QD=9.49;ReadPosRankSum=0.231;SNPEFF_AMINO_ACID_CHANGE=N129K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234590584_234591438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373426    GT:AD:DP:GQ:PL    0/1:63,45:108:99:1055,0,2066
2    234590974    rs17863778    C    A    239.24    SnpCluster    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DB;DP=106;Dels=0.0;FS=5.135;HRun=0;HaplotypeScore=0.5784;MQ=55.25;MQ0=2;MQRankSum=-1.288;QD=2.26;ReadPosRankSum=-0.542;SNPEFF_AMINO_ACID_CHANGE=R131;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234590584_234591438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373426    GT:AD:DP:GQ:PL    0/1:60,46:106:99:269,0,1954
2    234590975    rs17868324    G    A    218.05    SnpCluster    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=106;Dels=0.0;FS=3.769;HRun=4;HaplotypeScore=0.5784;MQ=55.25;MQ0=2;MQRankSum=-1.435;QD=2.06;ReadPosRankSum=-0.744;SNPEFF_AMINO_ACID_CHANGE=R131Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234590584_234591438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373426    GT:AD:DP:GQ:PL    0/1:60,45:106:99:248,0,1951
2    234591205    rs11692021    T    C    1927.23    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.344;DB;DP=164;Dels=0.0;FS=9.45;HRun=0;HaplotypeScore=4.4386;MQ=58.51;MQ0=1;MQRankSum=-4.698;QD=11.75;ReadPosRankSum=-1.315;SNPEFF_AMINO_ACID_CHANGE=W208R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234590584_234591438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373426    GT:AD:DP:GQ:PL    0/1:90,74:164:99:1957,0,2845
2    234601669    rs6759892    T    G    706.48    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.723;DB;DP=59;Dels=0.0;FS=1.053;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.159;QD=11.97;ReadPosRankSum=0.114;SNPEFF_AMINO_ACID_CHANGE=S7A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234601512_234602511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305139    GT:AD:DP:GQ:PL    0/1:29,30:59:99:736,0,1008
2    234601965    rs1105880    A    G    593.02    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=33;Dels=0.0;FS=1.404;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.759;QD=17.97;ReadPosRankSum=-1.343;SNPEFF_AMINO_ACID_CHANGE=L105;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234601512_234602511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305139    GT:AD:DP:GQ:PL    0/1:13,20:33:99:623,0,341
2    234602191    rs2070959    A    G    1394.73    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=4.154;DB;DP=92;Dels=0.0;FS=2.842;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.301;QD=15.16;ReadPosRankSum=-1.442;SNPEFF_AMINO_ACID_CHANGE=T181A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234601512_234602511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305139    GT:AD:DP:GQ:PL    0/1:44,48:92:99:1425,0,1173
2    234602202    rs1105879    A    C    1293.57    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.291;DB;DP=89;Dels=0.0;FS=1.765;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=14.53;ReadPosRankSum=-0.88;SNPEFF_AMINO_ACID_CHANGE=R184S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234601512_234602511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305139    GT:AD:DP:GQ:PL    0/1:45,44:89:99:1324,0,1310
2    234622429    rs2012734    T    C    1778.20    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.767;DB;DP=154;Dels=0.0;FS=3.176;HRun=0;HaplotypeScore=0.0;MQ=47.66;MQ0=6;MQRankSum=-5.336;QD=11.55;ReadPosRankSum=0.072;SNPEFF_AMINO_ACID_CHANGE=D264;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234621638_234622504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373414    GT:AD:DP:GQ:PL    0/1:80,74:154:99:1808,0,2084
2    234627608    rs2011425    T    G    519.81    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.51;DB;DP=28;Dels=0.0;FS=1.562;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.264;QD=18.56;ReadPosRankSum=-0.072;SNPEFF_AMINO_ACID_CHANGE=L48V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234627424_234628333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373409    GT:AD:DP:GQ:PL    0/1:10,18:28:99:550,0,323
2    234627937    rs2011404    T    C    1697.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.386;DB;DP=132;Dels=0.0;FS=4.515;HRun=0;HaplotypeScore=1.8835;MQ=58.87;MQ0=0;MQRankSum=-1.237;QD=12.86;ReadPosRankSum=1.107;SNPEFF_AMINO_ACID_CHANGE=C157;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234627424_234628333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373409    GT:AD:DP:GQ:PL    0/1:66,66:132:99:1728,0,1922
2    234637707    rs3806596    T    C    389.34    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=29;Dels=0.0;FS=10.017;HRun=0;HaplotypeScore=0.0;MQ=59.9;MQ0=0;MQRankSum=-0.327;QD=13.43;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344644    GT:AD:DP:GQ:PL    0/1:14,15:29:99:419,0,497
2    234637803    rs3821242    T    C    481.10    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=39;Dels=0.0;FS=4.863;HRun=0;HaplotypeScore=0.9734;MQ=59.26;MQ0=0;MQRankSum=-0.297;QD=12.34;ReadPosRankSum=-0.042;SNPEFF_AMINO_ACID_CHANGE=W11R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234637754_234638639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000482026    GT:AD:DP:GQ:PL    0/1:17,22:39:99:511,0,593
2    234637853    rs6706232    G    A    388.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.871;DB;DP=30;Dels=0.0;FS=6.107;HRun=1;HaplotypeScore=0.9332;MQ=58.5;MQ0=0;MQRankSum=-0.498;QD=12.95;ReadPosRankSum=0.456;SNPEFF_AMINO_ACID_CHANGE=E27;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234637754_234638639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000482026    GT:AD:DP:GQ:PL    0/1:15,15:30:99:419,0,493
2    234637912    rs6431625    T    C    522    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.45;MQ0=0;MQRankSum=-0.199;QD=15.35;ReadPosRankSum=0.163;SNPEFF_AMINO_ACID_CHANGE=V47A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234637754_234638639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000482026    GT:AD:DP:GQ:PL    0/1:16,18:34:99:552,0,495
2    234638249    rs7574296    A    G    1451.88    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.947;DB;DP=115;Dels=0.0;FS=1.478;HRun=1;HaplotypeScore=0.734;MQ=58.98;MQ0=0;MQRankSum=-0.652;QD=12.63;ReadPosRankSum=-1.922;SNPEFF_AMINO_ACID_CHANGE=A159;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234637754_234638639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000482026    GT:AD:DP:GQ:PL    0/1:60,55:115:99:1482,0,1865
2    234638690    rs2361501    A    T    462.99    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=58;Dels=0.0;FS=1.256;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.15;QD=7.98;ReadPosRankSum=0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344644    GT:AD:DP:GQ:PL    0/1:34,24:58:99:493,0,1144
2    234656640    rs11888459    T    C    1669.69    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.66;DB;DP=114;Dels=0.0;FS=1.528;HRun=0;HaplotypeScore=0.9967;MQ=57.9;MQ0=0;MQRankSum=-1.29;QD=14.65;ReadPosRankSum=-0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344644    GT:AD:DP:GQ:PL    0/1:50,64:114:99:1700,0,1536
2    234668879    rs34983651    C    CAT    218.80    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=47.7148;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=-0.259;QD=16.83;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT1A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480628    GT:AD:DP:GQ:PL    0/1:7,6:13:99:258,0,185
2    234688036    rs6431631    C    A    895.21    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.615;DB;DP=63;Dels=0.0;FS=1.052;HRun=0;HaplotypeScore=0.9987;MQ=59.63;MQ0=0;MQRankSum=2.26;QD=14.21;ReadPosRankSum=0.941;SNPEFF_AMINO_ACID_CHANGE=A11D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234687991_234688098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:31,32:63:99:925,0,899
2    234698790    rs2361502    T    C    2667.70    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=180;Dels=0.0;FS=5.555;HRun=0;HaplotypeScore=1.4105;MQ=58.58;MQ0=0;MQRankSum=-0.274;QD=14.82;ReadPosRankSum=1.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:94,86:180:99:2698,0,2700
2    234698911    rs5839492    ATC    A    1310.57    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=5.912;DB;DP=82;FS=4.363;HRun=0;HaplotypeScore=390.8889;IndelType=D;MQ=55.46;MQ0=0;MQRankSum=-1.48;QD=15.98;ReadPosRankSum=-0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:44,38:82:99:1350,0,1493
2    234698930    rs5839493    TTTCC    T    760.62    PASS    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=5.05;DB;DP=70;FS=5.143;HRun=0;HaplotypeScore=513.086;IndelType=D;MQ=53.03;MQ0=0;MQRankSum=-3.852;QD=10.87;ReadPosRankSum=1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:53,17:70:99:800,0,1525
2    234698976    rs12986677    G    A    276.81    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.78;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=52.45;MQ0=0;MQRankSum=-2.237;QD=10.65;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:12,14:26:99:307,0,424
2    234704607    rs1076454    C    T    436.30    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=29;Dels=0.0;FS=3.891;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=15.04;ReadPosRankSum=0.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480634    GT:AD:DP:GQ:PL    0/1:14,15:29:99:466,0,392
2    234704690    rs759173    T    C    1310.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.377;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_AMINO_ACID_CHANGE=L379;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234704613_234704691;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1344,108,0
2    234704746    rs759172    G    C    1227.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480634    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1260,93,0
2    234707460    rs11563247    G    C    68.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=10;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.88;ReadPosRankSum=-0.322;SNPEFF_AMINO_ACID_CHANGE=R431;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234707420_234707496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:5,5:10:98.75:99,0,141
2    234708428    rs13013882    G    A    346.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.49;SNPEFF_AMINO_ACID_CHANGE=V444;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234708426_234708545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:379,30,0
2    234708570    rs11563069    G    A    215.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
2    234708629    rs13018934    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
2    234708720    rs2041652    T    G    643.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:676,51,0
2    234712921    rs10175949    G    A    667.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477506    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:700,51,0
2    234713429    rs6716168    C    T    33.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477506    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
2    234713681    rs79208193    G    T    246.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.55;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.567;QD=12.32;ReadPosRankSum=-0.038;SNPEFF_AMINO_ACID_CHANGE=G659V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234713650_234713757;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:10,10:20:99:276,0,290
2    234716027    rs112570954    T    A    158.94    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=22.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477506    GT:AD:DP:GQ:PL    0/1:1,6:7:23.70:189,0,24
2    234717448    rs12053445    T    G    361.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:394,30,0
2    234717498    rs12053058    G    C    257.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:290,21,0
2    234717516    rs12053059    G    A    207.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:240,18,0
2    234717669    rs10803663    A    G    149.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:182,15,0
2    234718864    rs17863814    G    A    58.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.134;QD=4.84;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:8,4:12:88.11:88,0,260
2    234725502    rs726016    T    C    809.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=W978R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234725427_234725531;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:842,63,0
2    234726616    rs6756004    A    T    282.62    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.373;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.695;QD=10.09;ReadPosRankSum=-1.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:18,10:28:99:313,0,612
2    234727250    rs719419    T    G    34.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=3.83;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:6,3:9:64.48:64,0,208
2    234728078    rs1500480    T    C    162.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.05;SNPEFF_AMINO_ACID_CHANGE=F1107S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234727963_234728115;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:195,15,0
2    234730807    rs6734083    G    A    122.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.143;QD=10.17;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=V1184M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234730770_234730929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:6,6:12:99:152,0,126
2    234737045    rs626293    C    T    130.18    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.92;QD=16.27;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:3,5:8:99:160,0,102
2    234737372    rs7564261    C    A    211.93    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=8.195;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=17.66;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=R1406;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234737276_234737425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:5,7:12:99:242,0,152
2    234738175    rs502059    A    G    239.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:273,21,0
2    234738472    rs582432    G    A    294.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
2    234740136    rs879665    G    A    81.10    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.52;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=A1564T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234740055_234740186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:1,5:6:29.72:111,0,30
2    234740157    rs879664    G    A    64.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.17;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=V1571I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234740055_234740186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR7B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389758    GT:AD:DP:GQ:PL    0/1:1,3:4:30.21:95,0,30
2    234740758    rs213547    A    G    1124.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=41.35;MQ0=0;QD=33.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1157,99,0
2    234740797    rs3064782    C    CAAAA    3561.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=361.3572;IndelType=I;MQ=43.03;MQ0=0;QD=79.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,41:45:99:3562,132,0
2    234740798    rs59475663    T    A    83.04    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.03;MQ0=0;QD=1.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,45:45:9.03:115,9,0
2    234741022    rs122856    T    C    1078.10    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=26.9517;MQ=57.58;MQ0=0;QD=34.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,31:31:93.25:1111,93,0
2    234741028    rs5839496    A    AG    1302.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=274.8827;IndelType=I;MQ=58.17;MQ0=0;QD=46.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,28:28:84.29:1344,84,0
2    234749151    rs213555    C    T    965.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373395    GT:AD:DP:GQ:PL    1/1:0,27:27:78.22:998,78,0
2    234749258    rs10511    T    C    1010.71    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.267;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=59.48;MQ0=0;MQRankSum=-0.843;QD=12.48;ReadPosRankSum=-1.325;SNPEFF_AMINO_ACID_CHANGE=E638G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234749255_234750851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441687    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1041,0,1258
2    234749354    rs12582    G    A    956.15    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=59;Dels=0.0;FS=1.008;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=2.74;QD=16.21;ReadPosRankSum=-0.615;SNPEFF_AMINO_ACID_CHANGE=S606F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234749255_234750851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441687    GT:AD:DP:GQ:PL    0/1:28,31:59:99:986,0,911
2    234749780    rs3821238    G    C    876.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=50;Dels=0.0;FS=4.415;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.861;QD=17.52;ReadPosRankSum=0.723;SNPEFF_AMINO_ACID_CHANGE=S464C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234749461_234750851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414924    GT:AD:DP:GQ:PL    0/1:20,30:50:99:906,0,594
2    234750542    rs3732215    G    C    259.87    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.508;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.32;MQ0=0;MQRankSum=1.318;QD=7.64;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=S210C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234749461_234750851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414924    GT:AD:DP:GQ:PL    0/1:23,11:34:99:290,0,689
2    234750831    rs3806589    T    C    324.61    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.096;DB;DP=20;Dels=0.0;FS=4.964;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=16.23;ReadPosRankSum=0.206;SNPEFF_AMINO_ACID_CHANGE=R114G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234749461_234750851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414924    GT:AD:DP:GQ:PL    0/1:9,11:20:99:355,0,242
2    234753008    rs169925    G    A    652.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:686,51,0
2    234754273    rs2302156    T    C    290.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:323,24,0
2    234754506    rs2302155    G    A    522.48    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.359;DB;DP=52;Dels=0.0;FS=1.553;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=10.05;ReadPosRankSum=-0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    0/1:34,18:52:99:552,0,1132
2    234761225    rs2286430    C    T    433.50    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=42;Dels=0.0;FS=4.987;HRun=2;HaplotypeScore=0.9578;MQ=59.45;MQ0=0;MQRankSum=0.251;QD=10.32;ReadPosRankSum=-0.569;SNPEFF_AMINO_ACID_CHANGE=E76K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234761211_234761266;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    0/1:25,17:42:99:463,0,742
2    234761355    rs554699    G    A    602.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:636,48,0
2    234762272    rs473504    C    A    67.22    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=8.4;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    0/1:5,3:8:97.22:97,0,183
2    234762480    rs626110    A    T    2096.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2130,162,0
2    234762898    rs501145    C    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HJURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411486    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    234846198    rs1019103    G    A    1713.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479332    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1746,138,0
2    234846401    rs12470426    G    A    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=1.026;QD=9.3;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479332    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:67,0,65
2    234847573    rs9646720    A    G    339.30    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=22;Dels=0.0;FS=7.104;HRun=3;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.824;QD=15.42;ReadPosRankSum=-0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479332    GT:AD:DP:GQ:PL    0/1:10,12:22:99:369,0,323
2    234847823    rs2302153    A    C    358.16    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.401;DB;DP=24;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=1.9987;MQ=59.22;MQ0=0;MQRankSum=0.334;QD=14.92;ReadPosRankSum=-0.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479332    GT:AD:DP:GQ:PL    0/1:9,13:24:99:388,0,250
2    234873221    .    AG    A    308.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.571;DP=32;FS=14.78;HRun=1;HaplotypeScore=277.9893;IndelType=D;MQ=43.77;MQ0=0;MQRankSum=-3.015;QD=9.64;ReadPosRankSum=3.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487033    GT:AD:DP:GQ:PL    0/1:16,16:32:99:348,0,225
2    234888721    rs6736916    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324695    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    234890391    rs6708995    G    T    1744.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.51;MQ0=0;QD=37.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324695    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1778,132,0
2    234890793    rs4663993    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324695    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    234916831    rs6734618    A    G    730.57    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.154;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.366;MQ=56.41;MQ0=0;MQRankSum=-0.857;QD=16.23;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324695    GT:AD:DP:GQ:PL    0/1:20,25:45:99:761,0,637
2    234923362    rs28948677    G    A    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=5.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466594    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,144
2    234967539    rs593668    T    A    1668.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_AMINO_ACID_CHANGE=T10;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_234967480_234967602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425558    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1702,123,0
2    236403607    rs3738998    C    A    119.46    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.07;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    0/1:2,5:7:58.91:149,0,59
2    236433161    rs62191529    G    A    92.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=57.63;MQ0=0;MQRankSum=-0.922;QD=11.54;ReadPosRankSum=-2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    0/1:4,4:8:99:122,0,125
2    236433331    rs11689907    T    C    74.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
2    236617736    rs3754669    C    T    487.73    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.135;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5449;MQ=59.25;MQ0=0;MQRankSum=-0.022;QD=15.73;ReadPosRankSum=-0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    0/1:13,18:31:99:518,0,462
2    236672964    rs2675137    T    G    546.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:579,45,0
2    236716006    rs8178996    T    A    551.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.218;DB;DP=36;Dels=0.0;FS=4.715;HRun=0;HaplotypeScore=0.7887;MQ=59.36;MQ0=0;MQRankSum=0.649;QD=15.33;ReadPosRankSum=0.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    0/1:18,18:36:99:582,0,486
2    236761396    rs13006916    C    T    742.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=R373C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_236761330_236761846;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409457    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:775,57,0
2    236817336    rs35066072    CT    C    155.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=28;FS=0.0;HRun=14;HaplotypeScore=106.2643;IndelType=D;MQ=59.56;MQ0=0;MQRankSum=1.97;QD=5.55;ReadPosRankSum=-0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    0/1:14,14:28:99:195,0,234
2    236817629    rs4663215    C    T    430.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:464,36,0
2    236839731    rs35953119    G    A    82.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.65;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    0/1:1,3:4:27.27:113,0,27
2    236923361    rs35361765    C    CT    170.48    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;FS=0.0;HRun=9;HaplotypeScore=15.3037;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=21.31;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304032    GT:AD:DP:GQ:PL    0/1:1,7:8:1.99:208,0,2
2    236957822    rs2034648    G    A    1122.26    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=77;Dels=0.0;FS=6.632;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.26;QD=14.57;ReadPosRankSum=1.208;SNPEFF_AMINO_ACID_CHANGE=V510I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_236957703_236957925;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428334    GT:AD:DP:GQ:PL    0/1:40,37:77:99:1152,0,1207
2    237029163    rs13021559    G    A    357.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=18;Dels=0.0;FS=2.762;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.077;QD=19.84;ReadPosRankSum=-1.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466575    GT:AD:DP:GQ:PL    0/1:6,12:18:99:387,0,198
2    237149941    rs6756597    C    T    4663.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=59.53;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=A104T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_237149923_237150045;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409749    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4664,346,0
2    237150166    rs2015983    A    C    2422    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=59.69;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409749    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2455,196,0
2    237300677    rs10204742    T    C    1923.04    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.862;DB;DP=170;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.7887;MQ=59.64;MQ0=0;MQRankSum=-1.25;QD=11.31;ReadPosRankSum=1.026;SNPEFF_AMINO_ACID_CHANGE=K411R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_237300619_237300714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IQCA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431676    GT:AD:DP:GQ:PL    0/1:92,78:170:99:1953,0,2695
2    237301071    rs1384580    G    A    137.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=19.63;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IQCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309507    GT:AD:DP:GQ:PL    0/1:2,5:7:57.97:167,0,58
2    237307967    rs6719078    G    A    606.08    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=3.747;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.445;QD=19.55;ReadPosRankSum=0.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IQCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309507    GT:AD:DP:GQ:PL    0/1:12,19:31:99:636,0,315
2    237308387    rs6748813    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IQCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309507    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
2    237396935    rs6751722    G    A    207.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=14.8;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IQCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309507    GT:AD:DP:GQ:PL    0/1:7,7:14:99:237,0,246
2    237489904    rs1045879    C    T    1073.37    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.834;DB;DP=82;Dels=0.0;FS=1.814;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.032;QD=13.09;ReadPosRankSum=0.496;SNPEFF_AMINO_ACID_CHANGE=L266;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_237489083_237491001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000272928    GT:AD:DP:GQ:PL    0/1:40,42:82:99:1103,0,1163
2    238166147    rs4377288    G    A    381.98    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=1.692;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=17.36;ReadPosRankSum=-1.198;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC112715.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,15:22:99:412,0,180
2    238233410    rs4663722    C    G    389.73    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.026;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.723;QD=14.99;ReadPosRankSum=0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346358    GT:AD:DP:GQ:PL    0/1:12,14:26:99:420,0,318
2    238243369    rs10201909    G    A    616.79    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.13;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-2.65;QD=12.59;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=R2436;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238243269_238243532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    0/1:25,24:49:99:647,0,799
2    238243464    rs2270669    C    G    1827.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.505;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9158;MQ=59.19;MQ0=0;MQRankSum=-1.505;QD=29.02;ReadPosRankSum=-0.88;SNPEFF_AMINO_ACID_CHANGE=A2405P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238243269_238243532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    1/1:1,62:63:99:1861,111,0
2    238243656    rs11681749    C    T    186.65    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7621;MQ=57.44;MQ0=0;MQRankSum=-1.034;QD=16.97;ReadPosRankSum=-0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468792    GT:AD:DP:GQ:PL    0/1:4,7:11:99:217,0,105
2    238244575    rs4233631    T    C    35.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468792    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
2    238244781    rs11690358    T    C    154.98    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=26;Dels=0.0;FS=4.685;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.405;QD=5.96;ReadPosRankSum=-0.173;SNPEFF_AMINO_ACID_CHANGE=M2381V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238244778_238245175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    0/1:19,7:26:99:185,0,625
2    238244863    rs35879189    TGCA    T    361.86    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=3.849;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=150.2452;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=-1.071;QD=10.64;ReadPosRankSum=1.389;SNPEFF_AMINO_ACID_CHANGE=AA2352A;SNPEFF_CODON_CHANGE=gctgca/gca;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_2_238244778_238245175;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    0/1:23,11:34:99:401,0,1232
2    238244923    rs11683438    C    T    574.20    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=67;Dels=0.0;FS=11.746;HRun=0;HaplotypeScore=0.8321;MQ=55.36;MQ0=0;MQRankSum=0.401;QD=8.57;ReadPosRankSum=1.393;SNPEFF_AMINO_ACID_CHANGE=T2333;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238244778_238245175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    0/1:42,25:67:99:604,0,1165
2    238244963    rs6728818    A    G    2639.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=53.33;MQ0=0;QD=31.42;SNPEFF_AMINO_ACID_CHANGE=M2320T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238244778_238245175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2673,223,0
2    238249108    rs61729844    T    C    405.21    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.19;DB;DP=34;Dels=0.0;FS=1.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=11.92;ReadPosRankSum=-0.535;SNPEFF_AMINO_ACID_CHANGE=P2210;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238249095_238249793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    0/1:18,16:34:99:435,0,606
2    238249717    rs34558385    G    A    1107.63    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=119;Dels=0.0;FS=2.09;HRun=0;HaplotypeScore=1.7753;MQ=58.2;MQ0=0;MQRankSum=1.18;QD=9.31;ReadPosRankSum=0.294;SNPEFF_AMINO_ACID_CHANGE=S2007;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238249095_238249793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    0/1:55,54:119:99:1138,0,1079
2    238253332    rs10084221    G    A    897.60    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.008;QD=15.75;ReadPosRankSum=0.264;SNPEFF_AMINO_ACID_CHANGE=A1836;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238252993_238253486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    0/1:26,31:57:99:928,0,770
2    238253518    rs6725567    C    T    450.16    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=31;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=14.52;ReadPosRankSum=-1.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:16,15:31:99:480,0,522
2    238255120    rs2270656    C    T    953.13    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=3.027;DB;DP=52;Dels=0.0;FS=4.288;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.349;QD=18.33;ReadPosRankSum=1.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:18,34:52:99:983,0,433
2    238255285    rs6761147    G    A    255.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=21.31;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:4,8:12:99:286,0,131
2    238256825    rs13402341    G    A    209.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.225;DB;DP=14;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=-2.177;QD=14.97;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:6,8:14:99:240,0,197
2    238256885    rs71905592    AGT    A    823.81    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=4.82;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=218.6944;IndelType=D;MQ=44.62;MQ0=0;MQRankSum=-4.607;QD=22.88;ReadPosRankSum=1.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:15,20:36:99:863,0,633
2    238256906    .    G    GA    1192.90    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.241;DP=52;FS=0.0;HRun=0;HaplotypeScore=222.4363;IndelType=I;MQ=49.58;MQ0=0;MQRankSum=-4.698;QD=22.94;ReadPosRankSum=0.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:24,28:52:99:1232,0,724
2    238257127    rs3790990    C    A    286.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.744;DB;DP=25;Dels=0.0;FS=5.738;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.305;QD=11.47;ReadPosRankSum=-1.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:15,10:25:99:317,0,468
2    238257353    rs2646263    A    G    214.03    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.884;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.766;QD=14.27;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:6,9:15:99:244,0,164
2    238262021    rs36117715    G    A    208.92    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=18;Dels=0.0;FS=2.772;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=11.61;ReadPosRankSum=-1.449;SNPEFF_AMINO_ACID_CHANGE=P1611L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238261984_238262046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472056    GT:AD:DP:GQ:PL    0/1:11,7:18:99:239,0,400
2    238265684    rs10929228    C    T    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,110
2    238270378    rs111228504    G    A    690.99    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=4.511;DB;DP=54;Dels=0.0;FS=6.035;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.375;QD=12.8;ReadPosRankSum=-1.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:28,26:54:99:721,0,721
2    238271786    rs11287247    GC    G    1282.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.412;DB;DP=57;FS=0.0;HRun=10;HaplotypeScore=173.8005;IndelType=D;MQ=60.36;MQ0=0;MQRankSum=0.77;QD=22.5;ReadPosRankSum=0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    1/1:2,54:57:99:1324,128,0
2    238275232    rs75148159    G    A    426.82    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.425;DB;DP=24;Dels=0.0;FS=2.993;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.535;QD=17.78;ReadPosRankSum=0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295550    GT:AD:DP:GQ:PL    0/1:10,14:24:99:457,0,299
2    238462324    rs8260    A    G    1038.94    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.759;DB;DP=65;Dels=0.0;FS=3.442;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=-0.235;QD=15.98;ReadPosRankSum=-0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445024    GT:AD:DP:GQ:PL    0/1:32,33:65:99:1069,0,879
2    238483164    rs6766    T    C    598.84    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DB;DP=37;Dels=0.0;FS=3.185;HRun=0;HaplotypeScore=1.9722;MQ=58.11;MQ0=0;MQRankSum=0.427;QD=16.18;ReadPosRankSum=-0.017;SNPEFF_AMINO_ACID_CHANGE=P25;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238482970_238483229;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409576    GT:AD:DP:GQ:PL    0/1:14,23:37:99:629,0,381
2    238483331    rs8184    G    C    73.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.51;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409822    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,138
2    238483654    rs72990107    G    A    284.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=18.94;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411462    GT:AD:DP:GQ:PL    0/1:6,9:15:99:314,0,153
2    238483671    rs59945834    G    A    298.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.261;QD=14.2;ReadPosRankSum=0.858;SNPEFF_AMINO_ACID_CHANGE=C210;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238482965_238483771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264601    GT:AD:DP:GQ:PL    0/1:7,14:21:99:328,0,182
2    238483729    rs2280289    A    G    429.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=34;Dels=0.0;FS=1.4;HRun=1;HaplotypeScore=0.9998;MQ=58.63;MQ0=0;MQRankSum=-0.27;QD=12.63;ReadPosRankSum=-0.09;SNPEFF_AMINO_ACID_CHANGE=L191P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238482965_238483771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264601    GT:AD:DP:GQ:PL    0/1:17,17:34:99:459,0,433
2    238483874    rs111491353    C    A    139.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=13.95;ReadPosRankSum=-0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411462    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,168
2    238484222    rs10202062    G    A    81.02    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=16.2;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264601    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:111,0,30
2    238485251    rs72990117    G    A    239.65    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=43;Dels=0.0;FS=3.119;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.441;QD=5.57;ReadPosRankSum=0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264601    GT:AD:DP:GQ:PL    0/1:30,13:43:99:270,0,857
2    238485713    rs12478282    G    A    151.62    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.27;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264601    GT:AD:DP:GQ:PL    0/1:1,5:6:17.19:182,0,17
2    238486850    rs188449398    C    T    107.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=5.98;ReadPosRankSum=1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264601    GT:AD:DP:GQ:PL    0/1:12,6:18:99:138,0,312
2    238494319    rs10195011    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487008    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
2    238494448    rs3829285    T    C    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487008    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
2    238494742    rs3751112    A    G    429.67    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.076;DB;DP=42;Dels=0.0;FS=2.925;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=10.23;ReadPosRankSum=-1.188;SNPEFF_AMINO_ACID_CHANGE=V19A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238494641_238494800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264601    GT:AD:DP:GQ:PL    0/1:23,19:42:99:460,0,625
2    238500617    rs114637219    G    A    238.05    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=17;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=14.0;ReadPosRankSum=-0.048;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487008    GT:AD:DP:GQ:PL    0/1:8,9:17:99:268,0,210
2    238500642    rs10084167    A    G    72.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=8.05;ReadPosRankSum=-1.159;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487008    GT:AD:DP:GQ:PL    0/1:5,4:9:99:102,0,170
2    238503561    rs75477617    C    A    36.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.14;ReadPosRankSum=1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAB17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487008    GT:AD:DP:GQ:PL    0/1:4,2:6:66.83:67,0,112
2    238632377    rs3769085    A    C    498.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465870    GT:AD:DP:GQ:PL    1/1:0,18:18:45.13:531,45,0
2    238636409    rs11686648    G    C    669.67    PASS    AB=0.276;AC=1;AF=0.50;AN=2;BaseQRankSum=3.343;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.592;QD=23.09;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244815    GT:AD:DP:GQ:PL    0/1:8,21:29:99:700,0,143
2    238644136    rs3820810    A    G    117.49    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.5;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244815    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:147,0,27
2    238656936    rs2304431    A    G    230.46    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.83;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.775;QD=7.68;ReadPosRankSum=-0.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244815    GT:AD:DP:GQ:PL    0/1:19,11:30:99:260,0,673
2    238657142    rs11692182    C    T    125.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=10.48;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244815    GT:AD:DP:GQ:PL    0/1:6,6:12:99:156,0,183
2    238659708    rs3769062    C    T    156.98    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=12.08;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420665    GT:AD:DP:GQ:PL    0/1:5,8:13:99:187,0,172
2    238659963    rs3835808    TAA    T    354.51    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.326;DB;DP=41;FS=0.0;HRun=11;HaplotypeScore=171.3823;IndelType=D;MQ=59.44;MQ0=0;MQRankSum=-1.328;QD=8.65;ReadPosRankSum=1.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420665    GT:AD:DP:GQ:PL    0/1:25,16:41:99:394,0,940
2    238660063    rs77180638    A    G    185.75    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=14.29;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420665    GT:AD:DP:GQ:PL    0/1:6,7:13:99:216,0,203
2    238661832    rs733579    T    C    144.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.69;MQ0=0;MQRankSum=0.103;QD=14.48;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420665    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,167
2    238661870    rs3832061    GT    G    253.02    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=2.788;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=84.7008;IndelType=D;MQ=57.32;MQ0=0;MQRankSum=-0.109;QD=12.05;ReadPosRankSum=-1.195;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420665    GT:AD:DP:GQ:PL    0/1:8,13:21:99:292,0,212
2    238664884    rs11680940    T    C    198.39    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.847;QD=12.4;ReadPosRankSum=-0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498053    GT:AD:DP:GQ:PL    0/1:9,7:16:99:228,0,326
2    238665965    rs10180757    A    G    103.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=11.53;ReadPosRankSum=1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498053    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,174
2    238667311    rs7566942    T    C    828.72    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.928;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.66;MQ0=0;MQRankSum=-1.33;QD=12.37;ReadPosRankSum=0.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498053    GT:AD:DP:GQ:PL    0/1:38,29:67:99:859,0,1244
2    238667501    rs11463162    G    GA    1177.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=9;HaplotypeScore=235.6227;IndelType=I;MQ=60.78;MQ0=0;QD=21.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498053    GT:AD:DP:GQ:PL    1/1:9,23:55:99:1219,138,0
2    238667552    rs2279639    T    C    258.74    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=21;Dels=0.05;FS=0.0;HRun=0;HaplotypeScore=8.8647;MQ=60.98;MQ0=0;MQRankSum=-1.584;QD=11.76;ReadPosRankSum=0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498053    GT:AD:DP:GQ:PL    0/1:11,10:21:99:289,0,394
2    238667568    rs2279640    T    C    227.09    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.15;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.43;MQ0=0;MQRankSum=0.209;QD=15.14;ReadPosRankSum=-0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498053    GT:AD:DP:GQ:PL    0/1:7,8:15:99:257,0,243
2    238668783    rs3213869    A    G    778.62    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=45;Dels=0.0;FS=1.154;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.41;QD=17.3;ReadPosRankSum=-0.878;SNPEFF_AMINO_ACID_CHANGE=Q219R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238668707_238668848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289175    GT:AD:DP:GQ:PL    0/1:17,28:45:99:809,0,560
2    238668802    rs3213868    A    G    515.26    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8957;MQ=59.44;MQ0=0;MQRankSum=-0.378;QD=12.57;ReadPosRankSum=-0.483;SNPEFF_AMINO_ACID_CHANGE=T225;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238668707_238668848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289175    GT:AD:DP:GQ:PL    0/1:20,21:41:99:545,0,696
2    238672425    rs11680012    G    C    484.30    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.467;DB;DP=34;Dels=0.0;FS=7.791;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.362;QD=14.24;ReadPosRankSum=1.363;SNPEFF_AMINO_ACID_CHANGE=R634T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238671246_238673922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289175    GT:AD:DP:GQ:PL    0/1:16,18:34:99:514,0,534
2    238672703    rs3739038    C    G    868.58    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.132;DB;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=59.22;MQ0=0;MQRankSum=0.607;QD=14.72;ReadPosRankSum=0.23;SNPEFF_AMINO_ACID_CHANGE=H727D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238671246_238673922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289175    GT:AD:DP:GQ:PL    0/1:29,30:59:99:899,0,819
2    238672938    rs56151225    T    C    240.06    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=24.01;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308482    GT:AD:DP:GQ:PL    0/1:2,8:10:38.62:270,0,39
2    238688244    rs1151798    A    G    1433.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;QD=34.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464608    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1467,108,0
2    238786132    rs1210881    G    T    71.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254661    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
2    238896494    rs59213280    C    CA    603.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=206.0627;IndelType=I;MQ=45.9;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UBE2F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272930    GT:AD:DP:GQ:PL    1/1:3,6:17:51.08:646,51,0
2    238903310    rs10203101    C    T    323.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UBE2F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272930    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:357,27,0
2    238903399    rs12615308    G    A    506.60    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.351;DB;DP=39;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=0.183;QD=12.99;ReadPosRankSum=0.576;SNPEFF_AMINO_ACID_CHANGE=V30;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_238903386_238903451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UBE2F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409953    GT:AD:DP:GQ:PL    0/1:20,19:39:99:537,0,665
2    238925473    rs2875817    G    A    130.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UBE2F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433568    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
2    238939000    rs6431578    G    A    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UBE2F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272930    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    238949743    rs708078    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UBE2F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272930    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
2    238972827    rs821480    T    C    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254663    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
2    238990135    rs2249173    G    C    138.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254663    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:171,12,0
2    238990985    rs2249077    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413463    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    238991561    rs3835105    CT    C    137.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DB;DP=13;FS=0.0;HRun=14;HaplotypeScore=79.942;IndelType=D;MQ=54.44;MQ0=0;MQRankSum=-0.474;QD=10.6;ReadPosRankSum=-0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413463    GT:AD:DP:GQ:PL    1/1:2,10:13:4.91:178,5,0
2    238991733    rs2243417    C    A    1583.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.95;MQ0=0;QD=36.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413463    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1617,120,0
2    239025315    rs11901818    A    T    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343063    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
2    239025367    rs11896543    C    T    114.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.12;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343063    GT:AD:DP:GQ:PL    0/1:2,4:6:64.95:145,0,65
2    239025523    rs11903074    T    C    287.15    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DB;DP=39;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=7.36;ReadPosRankSum=-0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343063    GT:AD:DP:GQ:PL    0/1:27,11:39:99:317,0,751
2    239025630    rs11904159    T    C    176.45    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=5.88;ReadPosRankSum=-0.697;SNPEFF_AMINO_ACID_CHANGE=H314;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239025544_239025675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343063    GT:AD:DP:GQ:PL    0/1:18,11:30:99:206,0,570
2    239025645    rs11897736    C    T    162.81    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.808;QD=6.26;ReadPosRankSum=0.808;SNPEFF_AMINO_ACID_CHANGE=C319;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239025544_239025675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343063    GT:AD:DP:GQ:PL    0/1:17,9:26:99:193,0,504
2    239033901    rs10172440    T    C    158.79    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.461;DB;DP=13;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=12.21;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343063    GT:AD:DP:GQ:PL    0/1:5,8:13:99:189,0,137
2    239036270    rs13382446    C    T    105.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=10;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=10.51;ReadPosRankSum=2.017;SNPEFF_AMINO_ACID_CHANGE=S2;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239036263_239036375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409506    GT:AD:DP:GQ:PL    0/1:4,6:10:99:135,0,136
2    239036416    rs12692214    T    C    72.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343063    GT:AD:DP:GQ:PL    0/1:3,3:6:61.73:103,0,62
2    239039637    rs4663845    T    C    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.39;SNPEFF_AMINO_ACID_CHANGE=V393A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239038769_239041928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409506    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
2    239039896    rs10182906    G    C    75.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_AMINO_ACID_CHANGE=P479;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239038769_239041928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409506    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
2    239040187    rs12692215    T    C    599.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_AMINO_ACID_CHANGE=G576;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239038769_239041928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409506    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:632,48,0
2    239040218    rs73102309    G    A    298.97    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.272;DB;DP=25;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=11.96;ReadPosRankSum=0.52;SNPEFF_AMINO_ACID_CHANGE=A587T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239038769_239041928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESPNL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409506    GT:AD:DP:GQ:PL    0/1:14,11:25:99:329,0,400
2    239051550    rs935411    T    C    401.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.07;SNPEFF_AMINO_ACID_CHANGE=F277;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239051440_239051572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305959    GT:AD:DP:GQ:PL    1/1:0,16:16:33.10:434,33,0
2    239053436    rs12623661    G    C    111.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.133;QD=11.12;ReadPosRankSum=-1.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305959    GT:AD:DP:GQ:PL    0/1:4,6:10:99:141,0,99
2    239053685    rs13013945    A    C    224.69    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=17;Dels=0.0;FS=3.59;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.27;QD=13.22;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305959    GT:AD:DP:GQ:PL    0/1:8,9:17:99:255,0,243
2    239054504    rs11674140    G    T    118.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305959    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
2    239059484    rs7605194    T    C    157.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.21;SNPEFF_AMINO_ACID_CHANGE=N487;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239059455_239061547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305959    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
2    239070272    .    G    A    146.63    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DP=13;Dels=0.0;FS=9.89;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.377;QD=11.28;ReadPosRankSum=0.811;SNPEFF_AMINO_ACID_CHANGE=R79Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239070235_239070357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM132B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546354    GT:AD:DP:GQ:PL    0/1:7,6:13:99:177,0,159
2    239079029    rs41270751    A    G    37.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.358;QD=6.3;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016757.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408994    GT:AD:DP:GQ:PL    0/1:2,4:6:64.40:68,0,64
2    239079791    rs7577745    T    A    52.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.695;MQ=57.05;MQ0=0;MQRankSum=0.766;QD=3.29;ReadPosRankSum=0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016757.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408994    GT:AD:DP:GQ:PL    0/1:10,6:16:82.58:83,0,275
2    239082040    rs7585597    T    C    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.57;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016757.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408994    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,108
2    239082166    rs3832064    G    GC    332.10    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.669;DB;DP=29;FS=0.0;HRun=2;HaplotypeScore=69.4943;IndelType=I;MQ=59.2;MQ0=0;MQRankSum=-0.941;QD=11.45;ReadPosRankSum=0.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016757.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408994    GT:AD:DP:GQ:PL    0/1:19,10:29:99:371,0,548
2    239093788    rs6431588    T    C    69.04    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=7.67;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467133    GT:AD:DP:GQ:PL    0/1:6,3:9:99:99,0,186
2    239096999    rs60823094    A    C    38.96    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.185;QD=3.25;ReadPosRankSum=0.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467133    GT:AD:DP:GQ:PL    0/1:9,3:12:68.96:69,0,301
2    239134138    rs7572392    A    C    87.61    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.658;QD=4.17;ReadPosRankSum=0.262;SNPEFF_AMINO_ACID_CHANGE=V23G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239133754_239134140;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016757.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334973    GT:AD:DP:GQ:PL    0/1:15,5:20:99:118,0,477
2    239139883    rs13425452    G    C    408.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016757.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334973    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:442,33,0
2    239141505    rs148845540    A    G    1287.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.54;MQ0=0;QD=35.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016757.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334973    GT:AD:DP:GQ:PL    1/1:0,36:36:96.32:1321,96,0
2    239141724    rs11695827    G    A    326.30    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.89;MQ0=0;MQRankSum=1.94;QD=17.17;ReadPosRankSum=-0.702;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016757.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334973    GT:AD:DP:GQ:PL    0/1:8,11:19:99:356,0,217
2    239148575    rs11697    C    A    32.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254657    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
2    239148970    rs56294817    C    A    35.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254657    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
2    239155053    rs934945    C    T    125    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=14;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=8.93;ReadPosRankSum=0.933;SNPEFF_AMINO_ACID_CHANGE=G1244E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239152679_239155165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254657    GT:AD:DP:GQ:PL    0/1:9,5:14:99:155,0,328
2    239157721    rs35873326    G    A    1918.13    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=2.12;DB;DP=114;Dels=0.0;FS=2.425;HRun=0;HaplotypeScore=1.8055;MQ=59.38;MQ0=0;MQRankSum=1.602;QD=16.83;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=P1200;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239157703_239157853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254657    GT:AD:DP:GQ:PL    0/1:49,65:114:99:1948,0,1532
2    239162318    rs10195959    G    A    122    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=15.25;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=S782;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239161553_239162343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254657    GT:AD:DP:GQ:PL    0/1:3,5:8:67.59:152,0,68
2    239174290    rs78907943    T    C    434.76    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.309;QD=14.49;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254657    GT:AD:DP:GQ:PL    0/1:16,14:30:99:465,0,538
2    239184581    rs10462023    G    A    263.64    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.737;DB;DP=35;Dels=0.0;FS=2.089;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.624;QD=7.53;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254657    GT:AD:DP:GQ:PL    0/1:24,11:35:99:294,0,855
2    239237953    rs12464423    G    T    907.96    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.09;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.5;QD=15.65;ReadPosRankSum=0.09;SNPEFF_AMINO_ACID_CHANGE=K295N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_239237567_239237983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373327    GT:AD:DP:GQ:PL    0/1:30,28:58:99:938,0,906
2    239241279    rs148697277    G    A    43.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.97;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409739    GT:AD:DP:GQ:PL    0/1:1,2:4:18.64:74,0,19
2    239247174    rs73090911    A    G    96.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.73;MQ0=0;MQRankSum=-0.72;QD=16.11;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373327    GT:AD:DP:GQ:PL    0/1:2,4:6:65.85:127,0,66
2    239307245    rs571820    A    G    148.17    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=-0.405;QD=9.26;ReadPosRankSum=0.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462122    GT:AD:DP:GQ:PL    0/1:9,7:16:99:178,0,281
2    239990003    rs62189533    C    T    87.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345617    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    240003870    rs1063639    G    A    2265.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7334;MQ=59.32;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=P439;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240003798_240003917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543185    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2298,175,0
2    240016824    rs2279274    A    G    1286.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=36.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345617    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1319,99,0
2    240029736    rs7585225    T    C    635.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345617    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:668,48,0
2    240048027    rs2277885    C    T    94.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461113    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:127,9,0
2    240055901    rs2278778    G    A    134.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553145    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:167,12,0
2    240066417    rs2290087    A    G    1264.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345617    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1297,105,0
2    240066526    rs2290088    T    C    320.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345617    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:354,30,0
2    240078587    rs5839723    GAC    G    252.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=28.754;IndelType=D;MQ=54.44;MQ0=1;QD=25.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC017028.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396489    GT:AD:DP:GQ:PL    1/1:2,8:9:21.07:294,21,0
2    240083528    rs3791515    G    A    240.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454542    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:274,21,0
2    240083731    rs3828216    C    T    305.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454542    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:339,27,0
2    240084211    rs7581200    G    A    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454542    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
2    240085403    rs11124182    C    A    804.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454542    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:838,60,0
2    240085674    rs13010577    C    T    1415.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345617    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1449,111,0
2    240085795    rs2290089    A    C    241.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345617    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:275,24,0
2    240098053    .    C    CCCCTCCCTCTGCCCGGCCT    8128.38    PASS    AC=2;AF=1.00;AN=2;DP=40;FS=0.0;HRun=0;HaplotypeScore=363.4394;IndelType=I;MQ=43.87;MQ0=0;QD=176.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446876    GT:AD:DP:GQ:PL    1/1:10,28:40:99:8128,117,0
2    240111477    rs531993    A    T    177.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345617    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:210,18,0
2    240323661    rs1709851    C    A    293.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=58.45;MQ0=0;MQRankSum=-1.6;QD=19.57;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC062017.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409526    GT:AD:DP:GQ:PL    0/1:5,10:15:99:324,0,164
2    240323905    rs3215239    T    TG    1048.55    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.282;DB;DP=63;FS=3.596;HRun=1;HaplotypeScore=146.0813;IndelType=I;MQ=60.68;MQ0=0;MQRankSum=0.975;QD=16.64;ReadPosRankSum=-0.44;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_2_240323769_240324051;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC062017.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000409526    GT:AD:DP:GQ:PL    0/1:34,29:63:99:1088,0,1052
2    240500286    rs79203560    A    G    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.39;SNPEFF_AMINO_ACID_CHANGE=Q56R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240499995_240500618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC079612.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358775    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
2    240500413    rs6543554    A    G    158.16    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.44;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=5.27;ReadPosRankSum=-0.952;SNPEFF_AMINO_ACID_CHANGE=P98;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240499995_240500618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC079612.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358775    GT:AD:DP:GQ:PL    0/1:22,8:30:99:188,0,766
2    240500459    rs78138656    T    G    384.38    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.335;QD=8.94;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=S114A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240499995_240500618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC079612.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358775    GT:AD:DP:GQ:PL    0/1:29,14:43:99:414,0,976
2    240500560    rs115567488    T    C    1434.76    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=3.409;DB;DP=101;Dels=0.0;FS=9.762;HRun=0;HaplotypeScore=6.1786;MQ=59.4;MQ0=0;MQRankSum=1.389;QD=14.21;ReadPosRankSum=0.472;SNPEFF_AMINO_ACID_CHANGE=I147;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240499995_240500618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC079612.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358775    GT:AD:DP:GQ:PL    0/1:51,50:101:99:1465,0,1560
2    240692087    rs4851994    T    G    55.57    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=6.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093802.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407524    GT:AD:DP:GQ:PL    0/1:5,4:9:85.57:86,0,186
2    240721598    rs12613844    T    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093802.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407524    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    240909090    rs145000309    TCA    T    387.46    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.134;DB;DP=21;FS=4.123;HRun=0;HaplotypeScore=68.6522;IndelType=D;MQ=60.51;MQ0=0;MQRankSum=0.81;QD=18.45;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448880    GT:AD:DP:GQ:PL    0/1:11,10:21:99:426,0,584
2    240909369    rs77999459    A    G    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.3;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448880    GT:AD:DP:GQ:PL    0/1:2,2:4:63.55:67,0,64
2    240922822    rs958960    C    A    323.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.023;QD=11.54;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307300    GT:AD:DP:GQ:PL    0/1:16,12:28:99:353,0,540
2    240923050    rs1530144    C    T    348.39    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.797;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7884;MQ=60.0;MQ0=0;MQRankSum=-0.962;QD=10.25;ReadPosRankSum=0.297;SNPEFF_AMINO_ACID_CHANGE=V392M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240922934_240923134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307300    GT:AD:DP:GQ:PL    0/1:20,14:34:99:378,0,619
2    240946559    rs6713039    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252711    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    240957801    rs10804402    G    A    571.32    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.492;QD=20.4;ReadPosRankSum=0.984;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407129    GT:AD:DP:GQ:PL    0/1:9,19:28:99:601,0,287
2    240958129    rs4149540    C    T    545.99    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.081;DB;DP=40;Dels=0.0;FS=6.332;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-1.571;QD=13.65;ReadPosRankSum=-0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497536    GT:AD:DP:GQ:PL    0/1:21,19:40:99:576,0,695
2    240961639    rs35715497    T    C    958.18    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=75;Dels=0.0;FS=6.11;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;MQRankSum=0.069;QD=12.78;ReadPosRankSum=0.697;SNPEFF_AMINO_ACID_CHANGE=N65S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240961589_240961757;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252711    GT:AD:DP:GQ:PL    0/1:41,34:75:99:988,0,1216
2    240961728    rs2083411    T    C    409.08    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=32;Dels=0.0;FS=15.556;HRun=0;HaplotypeScore=1.999;MQ=60.0;MQ0=0;MQRankSum=-2.341;QD=12.78;ReadPosRankSum=-0.038;SNPEFF_AMINO_ACID_CHANGE=K35;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240961589_240961757;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252711    GT:AD:DP:GQ:PL    0/1:15,17:32:99:439,0,537
2    240961852    rs7596788    A    G    72.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.06;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252711    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,107
2    240981179    rs6731916    T    C    151.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319423    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:185,15,0
2    240981262    rs6728493    A    C    623.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.83;MQ0=0;QD=29.7;SNPEFF_AMINO_ACID_CHANGE=S380A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:657,51,0
2    240981375    rs6732185    T    A    1446.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.28;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=K342M;SNPEFF_CODON_CHANGE=aAg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1479,111,0
2    240981487    rs60617721    A    G    761.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0967;MQ=33.79;MQ0=6;QD=17.71;SNPEFF_AMINO_ACID_CHANGE=C305R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    1/1:0,43:43:69.16:795,69,0
2    240981515    rs59139800    A    G    244.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=19.62;MQ0=6;QD=9.04;SNPEFF_AMINO_ACID_CHANGE=H295;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    1/1:0,27:27:27.03:277,27,0
2    240982219    rs74006013    A    G    72.25    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9202;MQ=29.87;MQ0=2;MQRankSum=0.727;QD=12.04;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=S61P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    1/1:1,5:6:9.02:104,9,0
2    240982228    rs10439373    C    T    67.55    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8937;MQ=35.77;MQ0=2;MQRankSum=1.231;QD=9.65;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=G58S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    0/1:2,5:7:21.40:98,0,21
2    240982247    rs75044548    A    G    89.55    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=35.92;MQ0=2;MQRankSum=1.38;QD=11.19;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=H51;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    0/1:2,6:8:18.41:120,0,18
2    240982257    rs62184587    A    G    118.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.55;MQ0=2;QD=13.21;SNPEFF_AMINO_ACID_CHANGE=M48T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    1/1:0,9:9:12.04:151,12,0
2    240982271    rs76841013    G    A    265.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.86;MQ0=2;MQRankSum=1.393;QD=20.44;ReadPosRankSum=-0.348;SNPEFF_AMINO_ACID_CHANGE=H43;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240981230_240982399;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408934    GT:AD:DP:GQ:PL    1/1:1,12:13:24.07:299,24,0
2    240982443    rs34596708    C    T    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319423    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
2    240982449    rs35318485    C    T    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319423    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
2    240984789    rs12465491    C    T    1567.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=C234Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240984494_240985489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319423    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1601,123,0
2    240985099    rs150098707    G    A    94.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.04;MQ0=15;QD=4.28;SNPEFF_AMINO_ACID_CHANGE=R131C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240984494_240985489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319423    GT:AD:DP:GQ:PL    1/1:10,12:22:12.01:127,12,0
2    240985347    rs13030992    G    A    555.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.53;MQ0=11;QD=17.37;SNPEFF_AMINO_ACID_CHANGE=T48I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_240984494_240985489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319423    GT:AD:DP:GQ:PL    1/1:0,32:32:57.09:589,57,0
2    240985511    rs10933560    A    G    994.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.64;MQ0=0;QD=32.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319423    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:1028,78,0
2    241066280    rs4292120    C    T    2483.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=29.56;SNPEFF_AMINO_ACID_CHANGE=E153;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241065980_241066357;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEOV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307266    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2516,196,0
2    241069348    rs115914450    G    A    982.72    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=1.899;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.57;MQ0=0;MQRankSum=1.275;QD=18.2;ReadPosRankSum=1.22;SNPEFF_AMINO_ACID_CHANGE=R121W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241069328_241069445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEOV2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307266    GT:AD:DP:GQ:PL    0/1:20,33:54:99:1013,0,510
2    241073170    rs747741    C    T    128.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEOV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307266    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
2    241073450    rs3749078    C    T    1623.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319460    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1657,126,0
2    241375527    rs2352823    C    T    67.39    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.729;QD=7.49;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264039    GT:AD:DP:GQ:PL    0/1:4,5:9:97.38:97,0,128
2    241390516    rs3828336    C    T    317.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=1.303;QD=14.43;ReadPosRankSum=-1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC110619.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404327    GT:AD:DP:GQ:PL    0/1:11,11:22:99:347,0,350
2    241401566    rs35971355    G    A    37.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.34;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264039    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:67,0,36
2    241403955    rs3830536    GTGACGCCTGCGTGTGCGTGTCAACGCCTGTGTGCGCGCGT    G    1702.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=406.172;IndelType=D;MQ=44.85;MQ0=0;QD=154.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426280    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:1744,30,0
2    241404317    rs2229458    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_AMINO_ACID_CHANGE=P353;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241404273_241404392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264039    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
2    241404499    rs2228327    C    T    135.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.268;QD=9.68;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=S380;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241404494_241404627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264039    GT:AD:DP:GQ:PL    0/1:7,7:14:99:166,0,161
2    241404758    rs10188712    G    A    64.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426280    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:96,9,0
2    241405454    rs6760745    G    A    189.92    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.79;MQ0=0;MQRankSum=-0.747;QD=21.1;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426280    GT:AD:DP:GQ:PL    0/1:2,7:9:12.93:220,0,13
2    241405485    rs2228330    C    T    118.58    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.412;DB;DP=20;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=2.6676;MQ=48.28;MQ0=0;MQRankSum=-1.096;QD=5.93;ReadPosRankSum=0.219;SNPEFF_AMINO_ACID_CHANGE=G485;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241405475_241407493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264039    GT:AD:DP:GQ:PL    0/1:13,6:20:99:149,0,434
2    241405528    rs2228331    A    G    806.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=23.71;SNPEFF_AMINO_ACID_CHANGE=S500G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241405475_241407493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264039    GT:AD:DP:GQ:PL    1/1:0,34:34:75.14:839,75,0
2    241439809    rs78414006    C    A    122.66    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=17;Dels=0.0;FS=6.166;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=7.22;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489677    GT:AD:DP:GQ:PL    0/1:12,5:17:99:153,0,370
2    241451350    rs10427348    C    T    275.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.688;DB;DP=30;Dels=0.0;FS=8.7;HRun=0;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=-1.122;QD=9.18;ReadPosRankSum=-0.487;SNPEFF_AMINO_ACID_CHANGE=T410;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241451278_241451418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406958    GT:AD:DP:GQ:PL    0/1:18,12:30:99:305,0,506
2    241452198    rs12695025    T    C    125.12    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=14;Dels=0.0;FS=2.398;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.0;QD=8.94;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536462    GT:AD:DP:GQ:PL    0/1:9,5:14:99:155,0,207
2    241452212    rs12695026    T    C    171.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=15;Dels=0.0;FS=5.219;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.323;QD=11.44;ReadPosRankSum=0.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536462    GT:AD:DP:GQ:PL    0/1:9,6:15:99:202,0,224
2    241463453    rs3821348    C    A    1040.96    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=4.565;DB;DP=69;Dels=0.0;FS=0.921;HRun=1;HaplotypeScore=2.5114;MQ=59.67;MQ0=0;MQRankSum=0.67;QD=15.09;ReadPosRankSum=-0.215;SNPEFF_AMINO_ACID_CHANGE=V242L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241463302_241463798;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373320    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1071,0,843
2    241465994    rs10933611    T    C    68.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.36;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418708    GT:AD:DP:GQ:PL    0/1:3,3:6:90.86:98,0,91
2    241492255    rs4676428    G    T    565.24    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=4.336;DB;DP=40;Dels=0.0;FS=3.695;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.074;QD=14.13;ReadPosRankSum=1.781;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411765    GT:AD:DP:GQ:PL    0/1:22,18:40:99:595,0,646
2    241492528    rs10933614    A    T    60.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=5.03;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411765    GT:AD:DP:GQ:PL    0/1:8,4:12:90.34:90,0,266
2    241496445    rs11285932    TA    T    407.63    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.1;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=33.7258;IndelType=D;MQ=62.28;MQ0=0;MQRankSum=-0.091;QD=29.12;ReadPosRankSum=-1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272972    GT:AD:DP:GQ:PL    0/1:2,12:14:53.84:447,0,54
2    241496567    rs7609147    A    G    701.27    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=47;Dels=0.0;FS=20.671;HRun=2;HaplotypeScore=0.9998;MQ=59.01;MQ0=0;MQRankSum=-0.132;QD=14.92;ReadPosRankSum=0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272972    GT:AD:DP:GQ:PL    0/1:22,25:47:99:731,0,600
2    241516616    rs2953177    A    G    211.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451363    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
2    241531737    rs2975762    A    G    68.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.74;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463653    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:99,0,68
2    241533845    rs2975763    T    C    1196.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432084    GT:AD:DP:GQ:PL    1/1:0,35:35:96.29:1230,96,0
2    241534188    rs70961719    A    T    33.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.754;QD=4.15;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432084    GT:AD:DP:GQ:PL    0/1:4,4:8:63.19:63,0,132
2    241534293    .    C    A    138.56    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=23.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432084    GT:AD:DP:GQ:PL    0/1:1,5:6:8.63:168,0,9
2    241534381    rs2975764    A    G    381.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432084    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:415,36,0
2    241537421    rs3749166    G    A    630.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.727;DB;DP=40;Dels=0.0;FS=1.399;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.19;QD=15.75;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=A465;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241537305_241537504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354082    GT:AD:DP:GQ:PL    0/1:20,20:40:99:660,0,471
2    241538074    rs2975766    A    G    185.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=I132V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241538068_241538501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352879    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:218,18,0
2    241538229    rs2975767    A    G    81.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391982    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
2    241542437    rs7594981    G    A    39.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270361    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
2    241555705    rs2975776    G    A    1550.63    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-0.946;QD=21.24;ReadPosRankSum=-0.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270364    GT:AD:DP:GQ:PL    0/1:25,48:73:99:1581,0,749
2    241555784    rs12052926    G    T    1980.32    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=7.267;DB;DP=166;Dels=0.0;FS=20.459;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.407;QD=11.93;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270364    GT:AD:DP:GQ:PL    0/1:96,70:166:99:2010,0,2847
2    241555991    rs1509    G    T    1730.02    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=114;DS;Dels=0.0;FS=2.956;HRun=0;HaplotypeScore=0.9159;MQ=59.39;MQ0=0;MQRankSum=-0.014;QD=15.18;ReadPosRankSum=-0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270364    GT:AD:DP:GQ:PL    0/1:52,62:114:99:1760,0,1696
2    241569329    rs2975785    A    G    290.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.35;DB;DP=20;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.501;QD=14.52;ReadPosRankSum=0.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319838    GT:AD:DP:GQ:PL    0/1:8,12:20:99:320,0,202
2    241570249    rs3749172    A    C    1177.08    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.009;DB;DP=114;Dels=0.0;FS=2.482;HRun=3;HaplotypeScore=6.813;MQ=60.0;MQ0=0;MQRankSum=-0.111;QD=10.33;ReadPosRankSum=0.009;SNPEFF_AMINO_ACID_CHANGE=S294R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241569366_241570676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319838    GT:AD:DP:GQ:PL    0/1:60,54:114:99:1207,0,1881
2    241570391    rs2975786    A    G    69.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.67;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407714    GT:AD:DP:GQ:PL    0/1:5,4:9:99:99,0,185
2    241618801    rs142021110    G    A    164.93    MQFilter40    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.88;MQ0=2;MQRankSum=0.694;QD=7.85;ReadPosRankSum=0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407834    GT:AD:DP:GQ:PL    0/1:11,10:21:99:195,0,195
2    241621866    rs62187796    C    T    393.46    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.254;DB;DP=24;Dels=0.0;FS=5.076;HRun=0;HaplotypeScore=0.0;MQ=45.14;MQ0=2;MQRankSum=2.272;QD=16.39;ReadPosRankSum=-0.47;SNPEFF_AMINO_ACID_CHANGE=R130H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241621648_241622317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP12B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407834    GT:AD:DP:GQ:PL    0/1:7,17:24:99:423,0,112
2    241621869    rs74882485    G    A    98.97    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=23;Dels=0.0;FS=7.471;HRun=0;HaplotypeScore=0.0;MQ=47.78;MQ0=0;MQRankSum=-1.995;QD=4.3;ReadPosRankSum=0.105;SNPEFF_AMINO_ACID_CHANGE=T129M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241621648_241622317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP12B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407834    GT:AD:DP:GQ:PL    0/1:17,6:23:99:129,0,426
2    241622034    rs184125501    G    C    271.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.462;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=47.91;MQ0=1;MQRankSum=0.633;QD=9.06;ReadPosRankSum=0.109;SNPEFF_AMINO_ACID_CHANGE=T74S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241621648_241622317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP12B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407834    GT:AD:DP:GQ:PL    0/1:15,15:30:99:302,0,359
2    241622209    rs4081908    T    C    828.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.95;MQ0=0;QD=28.57;SNPEFF_AMINO_ACID_CHANGE=T16A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241621648_241622317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP12B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407834    GT:AD:DP:GQ:PL    1/1:0,29:29:72.19:861,72,0
2    241624664    rs148389432    C    A    106.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.14;MQ0=9;QD=8.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011298.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407635    GT:AD:DP:GQ:PL    1/1:2,11:13:12.03:139,12,0
2    241624694    rs147460526    T    C    42.93    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.84;MQ0=8;MQRankSum=0.727;QD=3.58;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011298.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407635    GT:AD:DP:GQ:PL    0/1:6,6:12:21.42:73,0,21
2    241624695    rs143920483    T    C    42.93    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.84;MQ0=8;MQRankSum=0.727;QD=3.58;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011298.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407635    GT:AD:DP:GQ:PL    0/1:6,6:12:21.42:73,0,21
2    241627928    rs1560619    A    G    200.02    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.259;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.07;MQ0=0;MQRankSum=-0.484;QD=8.0;ReadPosRankSum=-1.517;SNPEFF_AMINO_ACID_CHANGE=Q38R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241627833_241627929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011298.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407635    GT:AD:DP:GQ:PL    0/1:16,9:25:99:230,0,547
2    241631267    rs71428453    A    G    208.38    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DB;DP=22;Dels=0.0;FS=2.35;HRun=1;HaplotypeScore=0.0;MQ=55.19;MQ0=1;MQRankSum=-0.449;QD=9.47;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=Q2R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241631262_241631337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP12A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373309    GT:AD:DP:GQ:PL    0/1:12,10:22:99:238,0,286
2    241631413    rs71428454    T    G    266.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8288;MQ=57.01;MQ0=0;MQRankSum=-1.297;QD=9.89;ReadPosRankSum=0.259;SNPEFF_AMINO_ACID_CHANGE=C1G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241631413_241631938;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP12A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420599    GT:AD:DP:GQ:PL    0/1:15,12:27:99:297,0,429
2    241631476    rs4328629    C    G    215.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.23;MQ0=0;MQRankSum=-0.437;QD=15.37;ReadPosRankSum=-0.817;SNPEFF_AMINO_ACID_CHANGE=P22A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241631413_241631938;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP12A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420599    GT:AD:DP:GQ:PL    0/1:6,8:14:99:245,0,147
2    241631665    rs76463197    C    T    259.23    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.53;MQ0=0;MQRankSum=-0.028;QD=10.37;ReadPosRankSum=2.633;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241631491_241631938;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP12A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337801    GT:AD:DP:GQ:PL    0/1:16,9:25:99:289,0,528
2    241634850    .    T    C    76.96    MQFilter40    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DP=26;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=17.13;MQ0=10;MQRankSum=-1.059;QD=2.96;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337801    GT:AD:DP:GQ:PL    0/1:17,9:26:99:107,0,183
2    241659368    rs6437368    C    A    281.65    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.431;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.06;MQ0=0;MQRankSum=1.444;QD=14.08;ReadPosRankSum=1.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404283    GT:AD:DP:GQ:PL    0/1:9,11:20:99:312,0,285
2    241663019    rs2043252    C    T    129.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494452    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
2    241674222    rs3755533    T    C    237.05    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=23;Dels=0.0;FS=4.706;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.2;QD=10.31;ReadPosRankSum=-1.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320389    GT:AD:DP:GQ:PL    0/1:9,14:23:99:267,0,277
2    241680633    rs4414678    G    T    200.76    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.95;MQ0=0;MQRankSum=-0.919;QD=14.34;ReadPosRankSum=-1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320389    GT:AD:DP:GQ:PL    0/1:4,10:14:99:231,0,107
2    241680644    rs1013225    G    C    121.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.667;DB;DP=15;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.8667;MQ=57.16;MQ0=0;MQRankSum=1.6;QD=8.09;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320389    GT:AD:DP:GQ:PL    0/1:10,5:15:99:151,0,242
2    241680802    rs56024577    G    A    106.29    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=21.26;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320389    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:136,0,27
2    241696840    rs140254058    ATCC    A    131.18    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=21;FS=6.532;HRun=0;HaplotypeScore=96.7252;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=1.093;QD=6.25;ReadPosRankSum=0.811;SNPEFF_AMINO_ACID_CHANGE=ED917D;SNPEFF_CODON_CHANGE=gaggat/gat;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_2_241696736_241697011;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373308    GT:AD:DP:GQ:PL    0/1:16,5:21:99:170,0,327
2    241702561    rs11688298    T    A    168.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.072;QD=16.89;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320389    GT:AD:DP:GQ:PL    0/1:4,6:10:99:199,0,119
2    241706227    rs11681427    C    T    61.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=6.12;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463388    GT:AD:DP:GQ:PL    0/1:5,5:10:91.21:91,0,167
2    241722613    rs2288749    A    G    85.38    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-1.312;QD=6.1;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320389    GT:AD:DP:GQ:PL    0/1:9,4:14:99:115,0,291
2    241725637    rs74002922    G    A    116.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.43;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448728    GT:AD:DP:GQ:PL    0/1:2,4:6:21.93:147,0,22
2    241808314    rs34116584    C    T    108.67    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=57.66;MQ0=0;MQRankSum=-0.754;QD=5.43;ReadPosRankSum=0.352;SNPEFF_AMINO_ACID_CHANGE=P11L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241807896_241808447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:13,7:20:99:139,0,377
2    241808463    rs66494441    A    G    427.81    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.334;DB;DP=42;Dels=0.0;FS=4.533;HRun=0;HaplotypeScore=1.5661;MQ=53.43;MQ0=0;MQRankSum=0.895;QD=10.19;ReadPosRankSum=1.777;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:25,17:42:99:458,0,576
2    241808487    rs57017537    A    C    95.25    QDFilter2    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=53;Dels=0.0;FS=20.728;HRun=3;HaplotypeScore=0.7887;MQ=53.9;MQ0=0;MQRankSum=-0.918;QD=1.8;ReadPosRankSum=0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:39,14:53:99:125,0,1086
2    241808491    rs58120546    T    A    177.42    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.145;DB;DP=52;Dels=0.0;FS=24.432;HRun=0;HaplotypeScore=0.7887;MQ=53.77;MQ0=0;MQRankSum=-1.023;QD=3.41;ReadPosRankSum=0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:37,15:52:99:207,0,1070
2    241808539    .    TTGGGGAGG    T    184.87    PASS    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=3.816;DP=60;FS=12.412;HRun=0;HaplotypeScore=552.2067;IndelType=D;MQ=55.06;MQ0=0;MQRankSum=-2.533;QD=3.08;ReadPosRankSum=-1.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:52,8:60:99:224,0,6655
2    241808685    rs35698882    C    T    875.66    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7172;MQ=58.84;MQ0=0;MQRankSum=-1.164;QD=15.64;ReadPosRankSum=0.164;SNPEFF_AMINO_ACID_CHANGE=A88;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241808587_241808779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:27,29:56:99:906,0,707
2    241808792    rs34995778    C    T    199.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=27;Dels=0.0;FS=4.205;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.746;QD=7.39;ReadPosRankSum=-1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:18,9:27:99:230,0,475
2    241809898    rs34134404    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    241812697    rs11687303    G    C    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:65,0,32
2    241813496    rs11693280    C    T    427.69    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.371;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.789;QD=17.11;ReadPosRankSum=0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472436    GT:AD:DP:GQ:PL    0/1:9,16:25:99:458,0,299
2    241815307    rs12478859    C    T    213.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.262;DB;DP=26;Dels=0.0;FS=4.193;HRun=0;HaplotypeScore=0.8667;MQ=59.11;MQ0=0;MQRankSum=2.37;QD=8.23;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472436    GT:AD:DP:GQ:PL    0/1:14,12:26:99:244,0,390
2    241815308    rs12464426    A    G    188.67    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=27;Dels=0.0;FS=7.06;HRun=0;HaplotypeScore=0.8667;MQ=59.14;MQ0=0;MQRankSum=0.675;QD=6.99;ReadPosRankSum=0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472436    GT:AD:DP:GQ:PL    0/1:14,13:27:99:219,0,345
2    241815473    rs12695032    G    A    165.67    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=13.81;ReadPosRankSum=1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472436    GT:AD:DP:GQ:PL    0/1:5,7:12:99:196,0,170
2    241815591    rs4675793    C    T    163.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=23.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472436    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:196,15,0
2    241817516    rs4426527    A    G    204.34    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=2.276;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=15.72;ReadPosRankSum=-0.101;SNPEFF_AMINO_ACID_CHANGE=I340M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241817439_241817567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307503    GT:AD:DP:GQ:PL    0/1:6,7:13:99:234,0,201
2    241827676    rs34927891    G    A    136.75    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-2.166;QD=13.67;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307486    GT:AD:DP:GQ:PL    0/1:3,7:10:99:167,0,101
2    241827696    rs4675869    A    G    224.13    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=58.2;MQ0=0;MQRankSum=1.437;QD=17.24;ReadPosRankSum=-0.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307486    GT:AD:DP:GQ:PL    0/1:3,10:13:59.92:254,0,60
2    241828034    rs6707568    A    G    203.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.95;SNPEFF_AMINO_ACID_CHANGE=L141P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241827709_241828065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2orf54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402775    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
2    241865156    rs4675847    T    C    390.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=C31;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241865141_241865297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104809.3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430980    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:423,30,0
2    241871847    rs34726174    G    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_AMINO_ACID_CHANGE=G221R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241871735_241871912;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104809.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430980    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
2    241922182    rs4234090    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104809.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443866    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
2    241929228    rs10200024    A    G    167.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_AMINO_ACID_CHANGE=Q203R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241929071_241929250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104809.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443866    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
2    241976615    rs71404677    CG    C    307.87    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=20;FS=2.336;HRun=3;HaplotypeScore=85.5196;IndelType=D;MQ=59.67;MQ0=0;MQRankSum=0.653;QD=15.39;ReadPosRankSum=2.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    0/1:7,13:20:99:347,0,171
2    241979550    rs7571117    T    C    322.34    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.287;DB;DP=43;Dels=0.0;FS=1.24;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=7.5;ReadPosRankSum=-1.357;SNPEFF_AMINO_ACID_CHANGE=N368;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_241979492_241979605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    0/1:24,19:43:99:352,0,762
2    241987554    rs7590504    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    241992016    rs13031812    A    G    319.26    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.39;QD=13.3;ReadPosRankSum=0.463;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483962    GT:AD:DP:GQ:PL    0/1:13,11:24:99:349,0,346
2    241992053    rs13004780    G    A    194.11    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.15;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=53.52;MQ0=0;MQRankSum=0.0;QD=12.94;ReadPosRankSum=-0.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483962    GT:AD:DP:GQ:PL    0/1:7,8:15:99:224,0,224
2    242001991    rs10178146    A    G    74.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
2    242002607    rs12995841    C    G    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
2    242002828    rs7581709    C    T    75.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=12.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    0/1:2,4:6:66.19:105,0,66
2    242004199    rs2286319    G    C    116.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=61.19;MQ0=0;MQRankSum=0.248;QD=12.92;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    0/1:3,6:9:79.94:146,0,80
2    242004219    rs11464431    T    TG    304.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=28.7762;IndelType=I;MQ=61.34;MQ0=0;QD=38.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:347,24,0
2    242009273    rs13000549    G    T    143.21    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=13.02;ReadPosRankSum=2.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310397    GT:AD:DP:GQ:PL    0/1:6,5:11:99:173,0,168
2    242011151    rs6760731    A    G    186.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTERFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464344    GT:AD:DP:GQ:PL    1/1:0,8:8:21.02:219,21,0
2    242028741    rs1062748    A    G    178.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=21;Dels=0.0;FS=12.42;HRun=0;HaplotypeScore=2.5237;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=8.5;ReadPosRankSum=2.816;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTERFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414146    GT:AD:DP:GQ:PL    0/1:12,9:21:99:208,0,379
2    242033770    rs2302047    T    A    733.74    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=39;Dels=0.0;FS=1.52;HRun=0;HaplotypeScore=0.9159;MQ=58.92;MQ0=0;MQRankSum=-0.705;QD=18.81;ReadPosRankSum=1.488;SNPEFF_AMINO_ACID_CHANGE=T114S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242033692_242033847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTERFD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414146    GT:AD:DP:GQ:PL    0/1:16,23:39:99:764,0,421
2    242054718    rs61748659    G    A    1001.51    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.665;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.67;MQ0=0;MQRankSum=-0.704;QD=14.51;ReadPosRankSum=1.197;SNPEFF_AMINO_ACID_CHANGE=H1061;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242054703_242054828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234040    GT:AD:DP:GQ:PL    0/1:37,32:69:99:1032,0,1096
2    242062130    rs2302049    C    G    200.01    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.176;DB;DP=50;Dels=0.0;FS=3.845;HRun=0;HaplotypeScore=2.604;MQ=59.54;MQ0=0;MQRankSum=-0.647;QD=4.0;ReadPosRankSum=1.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459710    GT:AD:DP:GQ:PL    0/1:39,11:50:99:230,0,1095
2    242065601    rs75080735    C    T    237.86    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=25;Dels=0.0;FS=11.29;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=1.493;QD=9.51;ReadPosRankSum=0.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459710    GT:AD:DP:GQ:PL    0/1:14,11:25:99:268,0,343
2    242066242    .    G    C    784.66    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.468;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-1.438;QD=14.01;ReadPosRankSum=1.224;SNPEFF_AMINO_ACID_CHANGE=S480;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242065611_242066866;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539818    GT:AD:DP:GQ:PL    0/1:30,26:56:99:815,0,991
2    242066314    rs2240542    T    C    1022.66    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.669;DB;DP=93;Dels=0.0;FS=7.15;HRun=2;HaplotypeScore=1.5782;MQ=59.5;MQ0=0;MQRankSum=0.951;QD=11.0;ReadPosRankSum=1.849;SNPEFF_AMINO_ACID_CHANGE=A456;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242065611_242066866;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539818    GT:AD:DP:GQ:PL    0/1:55,38:93:99:1053,0,1588
2    242075192    rs2108484    A    G    130.01    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=14.45;ReadPosRankSum=2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415234    GT:AD:DP:GQ:PL    0/1:4,5:9:99:160,0,120
2    242077496    rs1470414    C    T    183.65    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.408;QD=15.3;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=V250I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242077368_242077502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234040    GT:AD:DP:GQ:PL    0/1:5,7:12:99:214,0,148
2    242079007    rs2074828    A    G    472.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.131;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.14;QD=9.85;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452907    GT:AD:DP:GQ:PL    0/1:28,20:48:99:503,0,740
2    242082222    rs2074834    C    A    186.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=15.52;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234040    GT:AD:DP:GQ:PL    0/1:4,8:12:99:216,0,128
2    242082262    rs6709462    T    C    215.26    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=17;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=12.66;ReadPosRankSum=2.069;SNPEFF_AMINO_ACID_CHANGE=Q11R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242082252_242082488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544142    GT:AD:DP:GQ:PL    0/1:9,8:17:99:245,0,257
2    242082480    rs758068    A    C    129.01    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=7.59;ReadPosRankSum=0.163;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_2_242082252_242082488;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544142    GT:AD:DP:GQ:PL    0/1:10,7:17:99:159,0,291
2    242082559    rs2066941    T    C    76.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234040    GT:AD:DP:GQ:PL    0/1:2,3:5:61.24:107,0,61
2    242093144    rs11884809    T    C    66.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.16;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234038    GT:AD:DP:GQ:PL    0/1:3,3:6:96.95:97,0,98
2    242098426    rs6753081    T    A    201.67    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.803;QD=10.61;ReadPosRankSum=0.972;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473017    GT:AD:DP:GQ:PL    0/1:12,7:19:99:232,0,385
2    242099961    rs2017989    C    T    438.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427172    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:472,36,0
2    242100062    rs11676460    A    G    106.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.83;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427172    GT:AD:DP:GQ:PL    0/1:2,4:6:65.46:137,0,65
2    242129487    rs11695874    G    T    144.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=18.11;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=R57;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242129472_242129586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274979    GT:AD:DP:GQ:PL    0/1:3,5:8:65.93:175,0,66
2    242129769    rs4675985    T    G    31.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=7.96;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274979    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:62,0,32
2    242135017    rs12694996    A    C    318.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274979    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:352,27,0
2    242138912    rs34107209    C    T    32.47    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=4.06;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402530    GT:AD:DP:GQ:PL    0/1:5,3:8:62.46:62,0,155
2    242139491    rs2013250    C    T    580.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402530    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:614,45,0
2    242140785    rs78154103    C    G    385.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.24;DB;DP=40;Dels=0.0;FS=1.496;HRun=0;HaplotypeScore=0.9916;MQ=58.84;MQ0=0;MQRankSum=0.687;QD=9.64;ReadPosRankSum=0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475532    GT:AD:DP:GQ:PL    0/1:24,16:40:99:416,0,687
2    242141719    rs2074840    C    T    491.33    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=42;Dels=0.0;FS=1.286;HRun=0;HaplotypeScore=0.8321;MQ=59.45;MQ0=0;MQRankSum=0.562;QD=11.7;ReadPosRankSum=-0.745;SNPEFF_AMINO_ACID_CHANGE=D294;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242141609_242141719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402430    GT:AD:DP:GQ:PL    0/1:22,20:42:99:521,0,596
2    242142737    rs1179530    T    C    175.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475532    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:209,15,0
2    242149010    rs57677160    C    T    70.10    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=5.39;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=A493V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242148913_242149050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402430    GT:AD:DP:GQ:PL    0/1:8,5:13:99:100,0,232
2    242149073    rs10192730    G    A    316.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274979    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:350,27,0
2    242151585    rs7593101    C    T    1071.25    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.881;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.983;QD=14.88;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=Y599;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242151509_242151620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402430    GT:AD:DP:GQ:PL    0/1:35,37:72:99:1101,0,1084
2    242163538    rs115620538    G    A    375.55    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=22;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.824;QD=17.07;ReadPosRankSum=1.22;SNPEFF_AMINO_ACID_CHANGE=T924;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242163512_242164791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274979    GT:AD:DP:GQ:PL    0/1:10,12:22:99:406,0,271
2    242176019    rs2305073    T    C    322.81    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=41;Dels=0.0;FS=3.091;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=1.099;QD=7.87;ReadPosRankSum=-0.814;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDLBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452931    GT:AD:DP:GQ:PL    0/1:24,17:41:99:353,0,718
2    242189231    rs12475607    T    C    432.52    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=27;Dels=0.0;FS=1.882;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.315;QD=16.02;ReadPosRankSum=0.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDLBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467435    GT:AD:DP:GQ:PL    0/1:13,14:27:99:463,0,461
2    242203776    rs71933081    C    CA    197.36    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=26;FS=0.0;HRun=14;HaplotypeScore=155.3104;IndelType=I;MQ=50.96;MQ0=0;MQRankSum=-1.508;QD=7.59;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDLBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417540    GT:AD:DP:GQ:PL    0/1:16,7:26:99:236,0,103
2    242203916    rs11891776    A    C    4267.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.27;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=S61A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242203863_242204020;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDLBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310931    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4268,328,0
2    242204175    rs3771344    A    G    178.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=22.35;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDLBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417540    GT:AD:DP:GQ:PL    0/1:2,6:8:57.47:209,0,57
2    242259614    rs6745662    G    A    671.74    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.958;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.84;MQ0=0;MQRankSum=0.109;QD=16.79;ReadPosRankSum=0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484648    GT:AD:DP:GQ:PL    0/1:17,23:40:99:702,0,513
2    242265273    rs4234100    C    T    159.46    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=14.5;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461048    GT:AD:DP:GQ:PL    0/1:5,6:11:99:189,0,177
2    242265313    rs12477089    C    A    280.21    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=19;Dels=0.0;FS=2.199;HRun=4;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=14.75;ReadPosRankSum=0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461048    GT:AD:DP:GQ:PL    0/1:8,11:19:99:310,0,245
2    242283071    rs6750169    C    T    2539.24    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=162;Dels=0.0;FS=1.71;HRun=0;HaplotypeScore=1.8279;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=15.67;ReadPosRankSum=-0.632;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428282    GT:AD:DP:GQ:PL    0/1:77,85:162:99:2569,0,2414
2    242283094    rs6707518    A    G    3147.91    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=3.967;DB;DP=207;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.655;MQ=59.67;MQ0=0;MQRankSum=-2.147;QD=15.21;ReadPosRankSum=0.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428282    GT:AD:DP:GQ:PL    0/1:94,112:207:99:3178,0,2833
2    242285545    rs11683764    A    G    248.37    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.157;DB;DP=31;Dels=0.0;FS=8.538;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.022;QD=8.01;ReadPosRankSum=-0.242;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428282    GT:AD:DP:GQ:PL    0/1:21,10:31:99:278,0,661
2    242343404    rs3732276    C    T    54.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=5.47;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445489    GT:AD:DP:GQ:PL    0/1:7,3:10:84.69:85,0,227
2    242344333    rs11681497    A    G    599.86    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=3.881;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.539;QD=23.07;ReadPosRankSum=1.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445489    GT:AD:DP:GQ:PL    0/1:9,17:26:99:630,0,276
2    242352581    rs144340200    T    C    91.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=10.11;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264042    GT:AD:DP:GQ:PL    0/1:5,4:9:99:121,0,133
2    242352633    .    A    AT    158.26    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DP=23;FS=0.0;HRun=9;HaplotypeScore=63.6238;IndelType=I;MQ=60.47;MQ0=0;MQRankSum=-0.648;QD=6.88;ReadPosRankSum=0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264042    GT:AD:DP:GQ:PL    0/1:15,8:23:99:197,0,297
2    242371101    rs757978    C    T    787.32    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.389;DB;DP=44;Dels=0.0;FS=2.749;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.089;QD=17.89;ReadPosRankSum=0.166;SNPEFF_AMINO_ACID_CHANGE=T260I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242371094_242371189;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264042    GT:AD:DP:GQ:PL    0/1:15,29:44:99:817,0,403
2    242374453    rs145392931    C    T    413.93    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.08;DB;DP=35;Dels=0.0;FS=7.574;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.414;QD=11.83;ReadPosRankSum=-0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471447    GT:AD:DP:GQ:PL    0/1:17,18:35:99:444,0,568
2    242375813    rs7601738    A    T    884.85    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.738;DB;DP=57;Dels=0.0;FS=2.136;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=1.125;QD=15.52;ReadPosRankSum=1.668;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471447    GT:AD:DP:GQ:PL    0/1:28,29:57:99:915,0,933
2    242407588    rs41342147    G    A    2879.02    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.871;DB;DP=196;Dels=0.0;FS=6.579;HRun=0;HaplotypeScore=0.9789;MQ=59.53;MQ0=0;MQRankSum=0.215;QD=14.69;ReadPosRankSum=0.705;SNPEFF_AMINO_ACID_CHANGE=V643I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242407555_242407792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264042    GT:AD:DP:GQ:PL    0/1:94,102:196:99:2909,0,2948
2    242433348    rs2018761    A    G    864.53    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=57;Dels=0.0;FS=1.098;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.057;QD=15.17;ReadPosRankSum=0.464;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486736    GT:AD:DP:GQ:PL    0/1:23,34:57:99:895,0,711
2    242435042    rs35393467    C    T    322.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.176;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=1.129;QD=10.76;ReadPosRankSum=-1.223;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264042    GT:AD:DP:GQ:PL    0/1:18,12:30:99:353,0,546
2    242511547    rs6757912    T    C    167.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318407    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
2    242523923    rs144402439    C    G    550.09    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=32;Dels=0.0;FS=2.071;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.421;QD=17.19;ReadPosRankSum=0.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321679    GT:AD:DP:GQ:PL    0/1:14,18:32:99:580,0,426
2    242542298    rs6437269    T    C    562.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402136    GT:AD:DP:GQ:PL    1/1:0,15:16:45.14:596,45,0
2    242556732    rs7580021    G    A    1963.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DB;DP=57;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=59.6;MQ0=0;MQRankSum=0.03;QD=34.45;ReadPosRankSum=-0.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402136    GT:AD:DP:GQ:PL    1/1:1,56:57:99:1997,133,0
2    242557019    rs7580246    G    A    576    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407315    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:609,45,0
2    242557028    rs36043566    G    C    426.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407315    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:459,36,0
2    242572846    rs3208142    A    G    1403    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=S242;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242572332_242573494;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407315    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1436,111,0
2    242573211    rs7424328    T    C    854.75    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.626;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=59.11;MQ0=0;MQRankSum=-0.779;QD=12.57;ReadPosRankSum=0.978;SNPEFF_AMINO_ACID_CHANGE=S121G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242572332_242573494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407315    GT:AD:DP:GQ:PL    0/1:40,28:68:99:885,0,1124
2    242590338    rs35731596    A    G    1103.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.368;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.274;QD=28.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337606    GT:AD:DP:GQ:PL    1/1:1,38:39:59.61:1137,60,0
2    242593703    rs6437274    A    G    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
2    242593856    .    AAG    A    44.87    QDFilter2    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DP=37;FS=0.0;HRun=0;HaplotypeScore=409.3247;IndelType=D;MQ=43.42;MQ0=0;MQRankSum=-3.223;QD=1.21;ReadPosRankSum=2.136;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415107    GT:AD:DP:GQ:PL    0/1:31,6:37:83.90:84,0,183
2    242606036    rs6709768    G    C    3524.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=S9T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242606011_242606253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428861    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3524,262,0
2    242607483    rs77179275    G    T    230.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429899    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:264,21,0
2    242607484    rs7592829    C    T    215.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429899    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:248,21,0
2    242610253    rs35454903    T    C    510.70    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.118;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.869;QD=12.16;ReadPosRankSum=-0.013;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400771    GT:AD:DP:GQ:PL    0/1:20,22:42:99:541,0,688
2    242610405    rs7584112    C    T    117.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400771    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:150,12,0
2    242610773    rs7601000    T    A    1071.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=L191Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242610727_242610781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428861    GT:AD:DP:GQ:PL    1/1:0,33:33:81.27:1104,81,0
2    242615462    rs5860    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311517    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
2    242617792    rs4076640    A    G    650.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311517    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:683,60,0
2    242618050    rs1131195    A    G    1252.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=D115;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242617867_242618064;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTYMK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305784    GT:AD:DP:GQ:PL    1/1:0,38:38:93.29:1285,93,0
2    242648545    rs7595652    C    T    454.46    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.322;DB;DP=45;Dels=0.0;FS=7.71;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.142;QD=10.1;ReadPosRankSum=-2.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ING5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313552    GT:AD:DP:GQ:PL    0/1:26,19:45:99:484,0,872
2    242648549    rs7568408    G    A    528.43    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=52;Dels=0.0;FS=1.936;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.916;QD=10.16;ReadPosRankSum=-0.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ING5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313552    GT:AD:DP:GQ:PL    0/1:32,20:52:99:558,0,1047
2    242662761    rs7572153    T    C    1902.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.31;MQ0=0;QD=28.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ING5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445620    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1936,168,0
2    242674959    rs62191977    T    G    359.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321264    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:393,33,0
2    242680366    rs4073890    A    G    169.93    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=24.28;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463932    GT:AD:DP:GQ:PL    0/1:1,6:7:18.94:200,0,19
2    242680430    rs4073889    A    G    227.80    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=13;Dels=0.0;FS=2.158;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=17.52;ReadPosRankSum=-0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463932    GT:AD:DP:GQ:PL    0/1:4,9:13:88.75:258,0,89
2    242684115    rs4234097    T    C    709.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.261;DB;DP=36;Dels=0.0;FS=10.836;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.226;QD=19.7;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321264    GT:AD:DP:GQ:PL    0/1:12,24:36:99:739,0,306
2    242684394    rs4675884    G    C    236.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=1.891;MQ=53.03;MQ0=0;QD=16.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321264    GT:AD:DP:GQ:PL    1/1:0,14:14:24.04:269,24,0
2    242688203    rs34519321    C    T    378.66    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=33;Dels=0.0;FS=1.523;HRun=0;HaplotypeScore=0.7887;MQ=56.55;MQ0=0;MQRankSum=0.264;QD=11.47;ReadPosRankSum=-0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321264    GT:AD:DP:GQ:PL    0/1:17,15:33:99:409,0,499
2    242688292    rs34767042    C    T    316.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.759;DB;DP=39;Dels=0.0;FS=3.796;HRun=0;HaplotypeScore=2.4441;MQ=57.59;MQ0=0;MQRankSum=0.798;QD=8.11;ReadPosRankSum=1.693;SNPEFF_AMINO_ACID_CHANGE=P289L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242688280_242688357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342518    GT:AD:DP:GQ:PL    0/1:26,13:39:99:346,0,459
2    242688366    rs35386923    C    T    154.01    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.069;QD=9.06;ReadPosRankSum=1.588;SNPEFF_AMINO_ACID_CHANGE=Q314*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_2_242688280_242688529;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000537090    GT:AD:DP:GQ:PL    0/1:9,8:17:99:184,0,305
2    242707101    rs6756901    A    G    147.56    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.699;QD=6.15;ReadPosRankSum=1.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=D2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321264    GT:AD:DP:GQ:PL    0/1:17,7:24:99:178,0,575
2    242716380    rs12469459    A    T    138.51    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=1.357;QD=8.15;ReadPosRankSum=0.352;SNPEFF_AMINO_ACID_CHANGE=M4L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242716240_242716399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAL3ST2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000192314    GT:AD:DP:GQ:PL    0/1:11,6:17:99:168,0,303
2    242742653    rs78145032    T    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAL3ST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192314    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
2    242742875    rs62620233    C    T    44.52    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.296;QD=4.45;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=A164V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242742760_242743623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAL3ST2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000192314    GT:AD:DP:GQ:PL    0/1:7,3:10:74.51:75,0,245
2    242755100    rs11693567    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEU4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
2    242757820    rs11545301    G    A    461.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=28.81;SNPEFF_AMINO_ACID_CHANGE=G301R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242757377_242758734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEU4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391969    GT:AD:DP:GQ:PL    1/1:0,16:16:39.09:494,39,0
2    242793273    rs2227981    A    G    305.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_AMINO_ACID_CHANGE=A268;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242792033_242793449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334409    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:338,27,0
2    242793559    rs6705653    T    C    141.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334409    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:174,15,0
2    242814009    rs7420371    G    A    37.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.59;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=G101E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_2_242813866_242815975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2orf85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343216    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:68,0,32
2    242836535    rs28559662    A    G    305.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131097.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401641    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:339,27,0
2    242839614    rs13025557    T    G    808.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.89;MQ0=0;QD=38.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC131097.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401641    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:841,63,0
2    243006046    rs71954419    GGAGGACACCAACAAT    G    551.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=146.3035;IndelType=D;MQ=45.5;MQ0=0;QD=55.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC093642.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446593    GT:AD:DP:GQ:PL    1/1:3,7:10:21.07:593,21,0
3    361508    rs2272522    C    T    480.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.781;DB;DP=28;Dels=0.0;FS=5.891;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.268;QD=17.14;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=L17F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_361366_361550;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    0/1:12,16:28:99:510,0,312
3    367757    rs162734    G    C    402.20    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.582;DB;DP=31;Dels=0.0;FS=2.071;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=12.97;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427688    GT:AD:DP:GQ:PL    0/1:18,13:31:99:432,0,554
3    367825    rs13073026    G    T    143.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=17.93;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427688    GT:AD:DP:GQ:PL    0/1:3,5:8:99:173,0,103
3    370051    rs62227239    C    T    962.95    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=4.142;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.072;QD=16.89;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421198    GT:AD:DP:GQ:PL    0/1:26,31:57:99:993,0,741
3    383936    rs9877555    T    C    53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    386520    rs1499046    C    T    458.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=35.26;ReadPosRankSum=1.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435603    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:491,36,0
3    390869    rs11706228    T    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
3    391100    rs13060847    A    G    1668.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=T287A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_391042_391226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397491    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1702,129,0
3    391352    .    G    A    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.33;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,146
3    396116    rs113875978    GCACA    G    448.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=64.4562;IndelType=D;MQ=59.89;MQ0=0;QD=37.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:2,10:12:30.10:491,30,0
3    403288    rs9824311    G    A    1110.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.9;MQ0=0;QD=38.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,29:29:87.28:1143,87,0
3    403297    rs9839027    C    A    1221.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1255,99,0
3    403308    rs9824442    G    A    1364.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1397,108,0
3    403345    rs9846775    A    G    2177.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.75;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2211,187,0
3    404771    rs4684390    C    T    156.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:189,15,0
3    405202    rs2387180    A    T    366.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471332    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:399,30,0
3    417994    rs930237    A    G    1092.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=28.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,38:38:93.25:1126,93,0
3    439963    rs6442827    A    G    1122.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=I1034V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_439910_440068;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397491    GT:AD:DP:GQ:PL    1/1:0,35:35:84.28:1155,84,0
3    440028    rs6771714    T    C    1504.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=N1055;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_439910_440068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397491    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1537,117,0
3    440088    rs6771803    T    A    1161.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,34:34:87.29:1195,87,0
3    440946    rs2387184    G    A    324.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453040    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:357,27,0
3    440977    rs2387185    G    A    209.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453040    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
3    447069    rs11705894    C    T    420.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256509    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
3    1262474    rs2013828    T    C    1277.93    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.776;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.43;MQ0=0;MQRankSum=0.8;QD=15.78;ReadPosRankSum=-0.614;SNPEFF_AMINO_ACID_CHANGE=N53;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_1262371_1262497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350110    GT:AD:DP:GQ:PL    0/1:32,49:81:99:1308,0,982
3    1269483    .    AT    A    566.22    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=3.912;DP=50;FS=2.79;HRun=10;HaplotypeScore=148.2345;IndelType=D;MQ=60.22;MQ0=0;MQRankSum=-0.236;QD=11.32;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350110    GT:AD:DP:GQ:PL    0/1:21,29:50:99:605,0,532
3    1320271    rs3732517    G    A    488.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.102;QD=27.15;ReadPosRankSum=0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350110    GT:AD:DP:GQ:PL    1/1:1,17:18:3.89:519,4,0
3    1337203    rs565499    A    G    239.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350110    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
3    1424718    rs2291101    G    A    686.81    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.149;DB;DP=45;Dels=0.0;FS=2.696;HRun=0;HaplotypeScore=3.6471;MQ=59.8;MQ0=0;MQRankSum=0.193;QD=15.26;ReadPosRankSum=2.832;SNPEFF_AMINO_ACID_CHANGE=V681;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_1424626_1424860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539053    GT:AD:DP:GQ:PL    0/1:21,24:45:99:717,0,693
3    1424850    rs2291100    T    G    844.55    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.162;DB;DP=67;Dels=0.0;FS=3.735;HRun=4;HaplotypeScore=1.9367;MQ=60.0;MQ0=0;MQRankSum=-0.773;QD=12.61;ReadPosRankSum=0.861;SNPEFF_AMINO_ACID_CHANGE=S725;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_1424626_1424860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539053    GT:AD:DP:GQ:PL    0/1:36,31:67:99:875,0,1222
3    1427079    rs12487202    C    A    230.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350110    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:263,21,0
3    1427204    rs3902441    T    A    482    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.42;DB;DP=47;Dels=0.0;FS=7.551;HRun=0;HaplotypeScore=0.734;MQ=50.41;MQ0=0;MQRankSum=-5.239;QD=10.26;ReadPosRankSum=1.947;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350110    GT:AD:DP:GQ:PL    0/1:27,20:47:99:512,0,967
3    1427206    .    CTTGTGG    C    1161.64    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=5.75;DP=47;FS=7.362;HRun=0;HaplotypeScore=355.4238;IndelType=D;MQ=50.41;MQ0=0;MQRankSum=-5.196;QD=24.72;ReadPosRankSum=2.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350110    GT:AD:DP:GQ:PL    0/1:27,20:47:99:1201,0,2536
3    1444243    rs13326014    A    G    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.53;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350110    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,125
3    2613001    rs2616585    A    G    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397461    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    2671394    rs115067365    A    G    108.28    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=15.47;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397461    GT:AD:DP:GQ:PL    0/1:2,5:7:64.35:138,0,64
3    2777622    rs1554198    A    G    3462.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.33;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397461    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3462,265,0
3    2787532    rs4685547    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422330    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    2908335    rs6442761    A    G    322.40    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.592;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=24.8;ReadPosRankSum=-0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    0/1:3,10:13:83.18:352,0,83
3    2967186    rs1967176    A    G    210.09    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9933;MQ=58.55;MQ0=0;MQRankSum=1.27;QD=13.13;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    0/1:7,9:16:99:240,0,221
3    3067850    rs7629924    A    G    504.23    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.917;DB;DP=31;Dels=0.0;FS=1.4;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=0.336;QD=16.27;ReadPosRankSum=-0.415;SNPEFF_AMINO_ACID_CHANGE=L189;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3067786_3067961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397459    GT:AD:DP:GQ:PL    0/1:15,16:31:99:534,0,468
3    3067853    rs7639977    G    A    506.10    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.349;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=1.975;QD=16.87;ReadPosRankSum=-0.644;SNPEFF_AMINO_ACID_CHANGE=P190;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3067786_3067961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397459    GT:AD:DP:GQ:PL    0/1:14,16:30:99:536,0,438
3    3068127    rs7618862    C    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    3076218    rs9845519    G    A    168.78    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.968;DB;DP=14;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.485;QD=12.06;ReadPosRankSum=-0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    0/1:8,6:14:99:199,0,270
3    3076284    rs6765545    G    C    524.35    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.027;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.39;QD=12.48;ReadPosRankSum=1.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    0/1:22,20:42:99:554,0,653
3    3076401    rs6790908    C    T    800.42    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.841;DB;DP=65;Dels=0.0;FS=1.03;HRun=0;HaplotypeScore=1.5592;MQ=58.93;MQ0=0;MQRankSum=0.889;QD=12.31;ReadPosRankSum=-0.434;SNPEFF_AMINO_ACID_CHANGE=N295;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3076316_3076474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397459    GT:AD:DP:GQ:PL    0/1:35,29:65:99:830,0,1058
3    3076443    rs6803232    A    G    2250.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.32;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=P309;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3076316_3076474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397459    GT:AD:DP:GQ:PL    1/1:0,67:68:99:2283,175,0
3    3078840    rs9820464    C    T    1169.07    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.643;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.031;QD=12.99;ReadPosRankSum=1.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    0/1:50,40:90:99:1199,0,1513
3    3079127    rs3749363    T    G    454.67    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.387;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.639;QD=13.78;ReadPosRankSum=-1.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    0/1:17,16:33:99:485,0,501
3    3079185    rs17657874    A    G    113.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.16;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    0/1:3,4:7:68.47:143,0,68
3    3080527    rs163543    C    T    248.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=31.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430505    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
3    3080611    rs10510251    G    C    363.80    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DB;DP=28;Dels=0.0;FS=1.576;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.561;QD=12.99;ReadPosRankSum=0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430505    GT:AD:DP:GQ:PL    0/1:15,13:28:99:394,0,429
3    3081825    rs339285    T    C    1787.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_AMINO_ACID_CHANGE=D428;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3081721_3081955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397459    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1820,144,0
3    3081959    rs339284    T    C    391.42    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.241;QD=13.5;ReadPosRankSum=0.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430505    GT:AD:DP:GQ:PL    0/1:16,13:29:99:421,0,558
3    3082003    rs339283    T    A    519.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430505    GT:AD:DP:GQ:PL    1/1:1,15:16:42.14:553,42,0
3    3084147    rs163560    A    G    421.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430505    GT:AD:DP:GQ:PL    1/1:0,13:14:36.07:454,36,0
3    3085004    rs163562    C    T    94.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427741    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
3    3095404    rs163573    G    A    318.97    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=16.79;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    0/1:9,10:19:99:349,0,274
3    3098041    rs163352    G    C    103    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358480    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:135,12,0
3    3115478    rs163897    T    C    3475.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.6;MQ0=0;QD=30.48;SNPEFF_AMINO_ACID_CHANGE=S114;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3115454_3115510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5RA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353055    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3475,283,0
3    3115514    rs340807    C    A    2582.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256452    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2616,199,0
3    3118142    rs17878995    G    T    435.60    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=3.788;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=19.8;ReadPosRankSum=0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256452    GT:AD:DP:GQ:PL    0/1:8,14:22:99:466,0,208
3    3133791    rs7647903    G    A    175.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256452    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:209,15,0
3    3137155    rs11389765    A    AT    310.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=10;HaplotypeScore=43.0566;IndelType=I;MQ=59.57;MQ0=0;QD=20.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445701    GT:AD:DP:GQ:PL    1/1:3,12:15:33.08:352,33,0
3    3139383    rs334802    C    A    125.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427088    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:158,12,0
3    3143267    rs6771148    G    C    416.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427088    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:450,33,0
3    3144246    rs3856847    T    A    573.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256452    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:607,45,0
3    3170792    rs334773    C    T    1704.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.52;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=P23L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3170698_3170872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251607    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1738,126,0
3    3170910    rs334772    A    G    668.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251607    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:702,51,0
3    3171023    rs334771    A    G    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
3    3171460    rs334769    C    T    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465998    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    3171713    rs113671187    G    GCCTGACT    2161.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=117.0552;IndelType=I;MQ=35.04;MQ0=0;QD=102.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465998    GT:AD:DP:GQ:PL    1/1:9,10:21:60.21:2203,60,0
3    3179262    rs334767    A    T    128.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397779    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
3    3182048    rs184085552    A    G    137.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.9;MQ0=0;MQRankSum=0.259;QD=11.45;ReadPosRankSum=-0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397779    GT:AD:DP:GQ:PL    0/1:6,6:12:99:167,0,197
3    3182485    rs184579    A    G    328.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397779    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:362,27,0
3    3182500    rs334760    G    C    344.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397779    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:378,30,0
3    3188016    rs3762760    A    G    48.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=8.15;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231948    GT:AD:DP:GQ:PL    0/1:3,3:6:78.90:79,0,107
3    3188362    rs1672772    A    G    374.01    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=31.17;ReadPosRankSum=1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231948    GT:AD:DP:GQ:PL    0/1:1,11:12:5.64:403,0,6
3    3189059    rs1621648    T    C    730.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231948    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:763,57,0
3    3189279    rs1705805    A    G    2085.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=32.08;SNPEFF_AMINO_ACID_CHANGE=A296;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3189134_3189387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRNT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280591    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2119,172,0
3    3189398    rs1669348    A    G    868.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.529;DB;DP=54;Dels=0.0;FS=6.181;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=1.124;QD=16.09;ReadPosRankSum=1.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231948    GT:AD:DP:GQ:PL    0/1:27,27:54:99:899,0,803
3    3192524    rs4183    A    ATAAC    858.22    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.044;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=57.9615;IndelType=I;MQ=57.94;MQ0=0;MQRankSum=-0.234;QD=47.68;ReadPosRankSum=-0.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459840    GT:AD:DP:GQ:PL    0/1:8,10:18:99:897,0,277
3    3193903    rs1134196    T    C    77.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.35;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480249    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:107,0,30
3    3193957    rs1705800    A    C    275.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=57.66;MQ0=0;QD=27.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480249    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:309,24,0
3    3194107    rs71934925    G    GA    894.46    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.334;DB;DP=92;FS=4.273;HRun=10;HaplotypeScore=248.9778;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=1.874;QD=9.72;ReadPosRankSum=-0.767;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480249    GT:AD:DP:GQ:PL    0/1:57,35:92:99:933,0,838
3    3195850    rs12635247    C    G    408.67    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.593;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=14.09;ReadPosRankSum=-1.942;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480249    GT:AD:DP:GQ:PL    0/1:14,15:29:99:439,0,467
3    3196273    rs34037496    AT    A    103.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=8;HaplotypeScore=13.0686;IndelType=D;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480249    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:145,15,0
3    3197871    rs1705789    T    C    1286.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231948    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1319,96,0
3    3197918    rs17027638    A    G    766.25    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=57;Dels=0.0;FS=2.226;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.088;QD=13.44;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=Y182;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3197903_3197965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546075    GT:AD:DP:GQ:PL    0/1:29,28:57:99:796,0,834
3    3209655    rs1672761    A    T    81.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492178    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
3    3215954    rs1669321    A    G    750.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231948    GT:AD:DP:GQ:PL    1/1:0,26:27:60.19:783,60,0
3    3221430    rs1672753    C    T    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231948    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
3    3886580    rs4685689    A    G    1890.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=A85;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3886048_3889387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319331    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1924,150,0
3    3887093    rs9844909    A    G    1470.07    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=0.301;DB;DP=77;Dels=0.0;FS=3.191;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.038;QD=19.09;ReadPosRankSum=-0.937;SNPEFF_AMINO_ACID_CHANGE=Q256;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3886048_3889387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319331    GT:AD:DP:GQ:PL    0/1:30,47:77:99:1500,0,826
3    3887876    rs2120609    T    C    3738.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.39;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=N517;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_3886048_3889387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319331    GT:AD:DP:GQ:PL    1/1:0,106:107:99:3738,292,0
3    4110440    rs34308595    T    TAAG    1461.15    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.164;DB;DP=79;FS=0.0;HRun=0;HaplotypeScore=259.667;IndelType=I;MQ=61.26;MQ0=0;MQRankSum=1.508;QD=18.5;ReadPosRankSum=0.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534863    GT:AD:DP:GQ:PL    0/1:51,28:79:99:1500,0,1059
3    4110570    rs711677    G    C    124.39    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=20.73;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534863    GT:AD:DP:GQ:PL    0/1:1,5:6:24.18:154,0,24
3    4345766    rs13099918    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETMAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358065    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    4459972    rs698209    A    G    193.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272902    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:226,18,0
3    4461569    rs711667    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272902    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    4461698    rs711666    C    T    842.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272902    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:876,66,0
3    4562667    rs1038639    T    G    654.32    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.374;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-1.397;QD=11.09;ReadPosRankSum=-1.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:33,26:59:99:684,0,1057
3    4683606    rs4685784    G    C    515.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491868    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:548,39,0
3    4687470    rs113665351    G    GCT    760.86    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=26;FS=2.831;HRun=0;HaplotypeScore=98.6126;IndelType=I;MQ=61.64;MQ0=0;MQRankSum=-1.323;QD=29.26;ReadPosRankSum=0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:8,17:26:14.22:800,0,14
3    4687498    rs41289624    T    A    221.08    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=16;Dels=0.0;FS=7.16;HRun=0;HaplotypeScore=0.0;MQ=62.0;MQ0=0;MQRankSum=-0.174;QD=13.82;ReadPosRankSum=1.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:9,7:16:99:251,0,213
3    4687548    rs4271897    A    G    60.77    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.65;MQ0=0;MQRankSum=-0.382;QD=5.06;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:9,3:12:90.76:91,0,278
3    4687577    rs4303850    A    G    37.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:4,2:6:67.23:67,0,144
3    4693656    rs6442894    C    T    86.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
3    4693937    rs6442895    G    C    881.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.495;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4092;MQ=58.5;MQ0=0;MQRankSum=-1.733;QD=31.49;ReadPosRankSum=1.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:1,27:28:38.92:915,39,0
3    4694010    rs6442896    A    C    132.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:165,15,0
3    4694068    rs6442897    C    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    4703547    rs6801563    T    C    123.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
3    4712234    rs1994500    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
3    4712413    rs2306875    G    A    430.43    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.118;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.48;MQ0=0;MQRankSum=-0.578;QD=11.96;ReadPosRankSum=-1.54;SNPEFF_AMINO_ACID_CHANGE=K654;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_4712413_4712610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:21,15:36:99:460,0,717
3    4712710    rs2306876    A    T    141.63    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=10.89;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:7,6:13:99:172,0,250
3    4716214    rs3804984    T    C    156.91    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477577    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:187,0,21
3    4716672    rs13082052    T    C    276.74    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.836;QD=13.84;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477577    GT:AD:DP:GQ:PL    0/1:11,9:20:99:307,0,406
3    4722070    rs72995437    C    T    66.45    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.807;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.588;QD=4.43;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:11,4:15:96.45:96,0,416
3    4725555    rs17710726    G    C    503.69    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.092;DB;DP=33;Dels=0.0;FS=2.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.999;QD=15.26;ReadPosRankSum=0.773;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:16,17:33:99:534,0,495
3    4732670    rs4685801    G    A    98.52    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=16.42;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:1,5:6:27.19:129,0,27
3    4733269    rs6786081    C    G    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
3    4738653    rs3749381    T    C    235.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=19.6;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:4,8:12:99:265,0,133
3    4738774    rs3749382    A    G    1102.38    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5847;MQ=59.01;MQ0=0;MQRankSum=0.75;QD=15.75;ReadPosRankSum=-1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1132,0,922
3    4738999    rs57508054    G    GGTGTGT    583.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.992;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=332.9231;IndelType=I;MQ=50.76;MQ0=1;MQRankSum=-0.496;QD=12.96;ReadPosRankSum=-1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:34,5:44:33.71:625,34,0
3    4741821    rs9311395    A    G    125.32    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=15.66;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:3,5:8:95.95:155,0,96
3    4753712    rs2306881    A    G    284.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:317,27,0
3    4767262    rs7613447    T    C    1287.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=26.83;SNPEFF_AMINO_ACID_CHANGE=T169;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_4767230_4767265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426160    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1321,117,0
3    4817057    rs6442905    T    C    6382.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=198;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6617;MQ=59.77;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=N1974;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_4816926_4817126;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456211    GT:AD:DP:GQ:PL    1/1:0,198:198:99:6383,505,0
3    4818792    rs4684443    T    C    892.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=38.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479831    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:925,69,0
3    4824131    rs6442907    T    C    399.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:433,33,0
3    4842488    rs2291861    G    T    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.64;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302640    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,150
3    4856180    rs711631    T    C    3630.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=59.8;MQ0=0;MQRankSum=-1.518;QD=31.84;ReadPosRankSum=-0.843;SNPEFF_AMINO_ACID_CHANGE=T2482;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_4856107_4856246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456211    GT:AD:DP:GQ:PL    1/1:1,113:114:99:3630,301,0
3    4856234    rs901854    G    A    1864.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.18;SNPEFF_AMINO_ACID_CHANGE=K1009;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_4856107_4856246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426160    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1898,150,0
3    4856993    rs6442911    C    G    1273.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=38.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467545    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1306,99,0
3    4859725    rs9844268    G    A    1706.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.03;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018816.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441894    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1740,129,0
3    4867510    rs1051559    A    G    941.37    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.87;DB;DP=50;Dels=0.0;FS=1.401;HRun=2;HaplotypeScore=1.7753;MQ=59.63;MQ0=0;MQRankSum=-0.313;QD=18.83;ReadPosRankSum=-1.162;SNPEFF_AMINO_ACID_CHANGE=P51;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_4867430_4867546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018816.3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449914    GT:AD:DP:GQ:PL    0/1:18,32:50:99:971,0,625
3    4878419    rs80218153    CTTTTTTTTTTT    C    395.96    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;FS=0.0;HRun=24;HaplotypeScore=121.5525;IndelType=D;MQ=38.13;MQ0=0;MQRankSum=-2.054;QD=44.0;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018816.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441894    GT:AD:DP:GQ:PL    0/1:2,5:9:99:435,0,389
3    4878839    rs10865951    T    C    131.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478515    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:164,15,0
3    4927281    rs4685841    T    C    253.76    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.991;QD=19.52;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018816.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441894    GT:AD:DP:GQ:PL    0/1:5,8:13:99:284,0,163
3    4927308    rs6794077    A    G    640.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC018816.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441894    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:674,57,0
3    5021403    rs2271566    C    T    31.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.5;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHLHE40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467610    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:61,0,30
3    5022961    rs13076468    A    C    463.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.894;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6316;MQ=59.49;MQ0=0;MQRankSum=-2.385;QD=19.31;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHLHE40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256495    GT:AD:DP:GQ:PL    0/1:9,15:24:99:493,0,294
3    5022981    rs34085319    CT    C    375.41    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=5.139;DB;DP=44;FS=0.0;HRun=10;HaplotypeScore=191.7192;IndelType=D;MQ=59.44;MQ0=0;MQRankSum=0.109;QD=8.53;ReadPosRankSum=2.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHLHE40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256495    GT:AD:DP:GQ:PL    0/1:23,21:44:99:414,0,594
3    5024415    rs11398309    A    AT    1787.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.051;DB;DP=71;FS=0.0;HRun=11;HaplotypeScore=181.9578;IndelType=I;MQ=60.12;MQ0=0;MQRankSum=0.225;QD=25.18;ReadPosRankSum=1.601;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHLHE40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460806    GT:AD:DP:GQ:PL    1/1:9,62:71:99:1830,115,0
3    5024771    rs908078    T    C    457.51    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.602;DB;DP=39;Dels=0.0;FS=1.294;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.303;QD=11.73;ReadPosRankSum=1.313;SNPEFF_AMINO_ACID_CHANGE=G211;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_5024521_5027008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHLHE40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256495    GT:AD:DP:GQ:PL    0/1:24,15:39:99:487,0,774
3    5214505    rs141004680    A    G    256.17    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=14.23;ReadPosRankSum=0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429403    GT:AD:DP:GQ:PL    0/1:8,10:18:99:286,0,285
3    5241223    rs377120    C    T    259.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465187    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
3    5241309    rs410509    C    A    457.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.91;SNPEFF_AMINO_ACID_CHANGE=A10;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_5241277_5241380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EDEM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445686    GT:AD:DP:GQ:PL    1/1:0,17:17:36.10:490,36,0
3    6903297    rs3749380    C    T    249.30    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=18;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.299;QD=13.85;ReadPosRankSum=0.048;SNPEFF_AMINO_ACID_CHANGE=N74;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_6902802_6903594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357716    GT:AD:DP:GQ:PL    0/1:8,10:18:99:279,0,256
3    6903601    rs342034    A    G    443.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357716    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:476,36,0
3    7340164    rs2291867    G    A    34.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.38;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357716    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:64,0,32
3    7347995    rs62237061    G    C    37.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.2;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357716    GT:AD:DP:GQ:PL    0/1:4,2:6:67.18:67,0,140
3    7456675    rs712774    C    T    293.52    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.173;DB;DP=27;Dels=0.0;FS=9.118;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.344;QD=10.87;ReadPosRankSum=-1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357716    GT:AD:DP:GQ:PL    0/1:16,11:27:99:324,0,479
3    7494245    rs111752136    TTG    T    241.98    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=120.0138;IndelType=D;MQ=59.16;MQ0=0;MQRankSum=0.83;QD=8.34;ReadPosRankSum=0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357716    GT:AD:DP:GQ:PL    0/1:18,10:29:99:281,0,592
3    7494417    rs2229902    A    T    455.36    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.335;DB;DP=29;Dels=0.0;FS=1.617;HRun=1;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;MQRankSum=1.593;QD=15.7;ReadPosRankSum=0.982;SNPEFF_AMINO_ACID_CHANGE=Y433F;SNPEFF_CODON_CHANGE=tAc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_7494294_7494494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357716    GT:AD:DP:GQ:PL    0/1:14,15:29:99:485,0,375
3    7721613    rs162802    T    C    497.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357716    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:531,39,0
3    7732726    rs5846531    AT    A    1194.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=11;HaplotypeScore=157.7855;IndelType=D;MQ=60.39;MQ0=0;QD=21.72;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_7732727_7732793;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GRM7;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000525747    GT:AD:DP:GQ:PL    1/1:1,49:55:99:1237,157,0
3    8543713    rs5846598    G    GT    909.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=2;HaplotypeScore=49.1068;IndelType=I;MQ=60.45;MQ0=0;QD=37.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000157600    GT:AD:DP:GQ:PL    1/1:2,22:24:66.22:951,66,0
3    8543892    rs77081317    G    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000157600    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    8590313    rs3088339    T    C    1027.01    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=86;Dels=0.0;FS=0.866;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=11.94;ReadPosRankSum=-0.091;SNPEFF_AMINO_ACID_CHANGE=G106;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_8590254_8590589;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMCD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426878    GT:AD:DP:GQ:PL    0/1:48,38:86:99:1057,0,1289
3    8608920    rs171408    G    A    442.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.395;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.007;QD=21.09;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000157600    GT:AD:DP:GQ:PL    0/1:7,14:21:99:473,0,189
3    8667896    rs355058    T    C    1315.66    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=128;Dels=0.0;FS=8.483;HRun=0;HaplotypeScore=2.3782;MQ=59.67;MQ0=0;MQRankSum=0.806;QD=10.28;ReadPosRankSum=-0.786;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427408    GT:AD:DP:GQ:PL    0/1:77,50:128:99:1346,0,2417
3    8669367    rs34995627    TG    T    418.17    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=1.297;DB;DP=27;FS=1.598;HRun=4;HaplotypeScore=76.8177;IndelType=D;MQ=60.4;MQ0=0;MQRankSum=-0.727;QD=15.49;ReadPosRankSum=-0.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427408    GT:AD:DP:GQ:PL    0/1:11,16:27:99:457,0,384
3    8676945    rs3816911    T    C    212.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317371    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
3    8686191    rs164959    C    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317371    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
3    8686727    rs13099767    G    T    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317371    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    8775589    rs1974763    C    T    1097.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=70;Dels=0.0;FS=2.018;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.442;QD=15.68;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=L9;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_8775486_8775676;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343849    GT:AD:DP:GQ:PL    0/1:30,40:70:99:1127,0,753
3    8787189    rs57159780    G    C    191.73    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=17;Dels=0.0;FS=4.752;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=11.28;ReadPosRankSum=-0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316793    GT:AD:DP:GQ:PL    0/1:9,8:17:99:222,0,267
3    8787220    rs13087941    T    C    240.58    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.934;DB;DP=24;Dels=0.0;FS=3.821;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=10.02;ReadPosRankSum=-0.429;SNPEFF_AMINO_ACID_CHANGE=F41;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_8787212_8788451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343849    GT:AD:DP:GQ:PL    0/1:13,11:24:99:271,0,399
3    8809162    rs61740241    C    T    236.83    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=19;Dels=0.0;FS=2.304;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=12.46;ReadPosRankSum=-0.041;SNPEFF_AMINO_ACID_CHANGE=A238T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_8808952_8810015;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXTR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316793    GT:AD:DP:GQ:PL    0/1:10,9:19:99:267,0,339
3    8809184    rs237902    G    A    257.75    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=23;Dels=0.0;FS=4.434;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.409;QD=11.21;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=N230;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_8808952_8810015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316793    GT:AD:DP:GQ:PL    0/1:14,9:23:99:288,0,421
3    8809703    rs2228485    G    A    172.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.64;SNPEFF_AMINO_ACID_CHANGE=N57;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_8808952_8810015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316793    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:205,15,0
3    8810008    rs237911    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474615    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    8931984    rs656626    A    C    349.67    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.713;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.006;QD=13.99;ReadPosRankSum=-2.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264926    GT:AD:DP:GQ:PL    0/1:13,12:25:99:380,0,470
3    8932189    rs607531    C    T    414.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.859;DB;DP=35;Dels=0.0;FS=5.87;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.118;QD=11.83;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264926    GT:AD:DP:GQ:PL    0/1:21,14:35:99:444,0,682
3    8943988    rs464302    C    A    379.98    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.208;DB;DP=27;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=14.07;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264926    GT:AD:DP:GQ:PL    0/1:14,13:27:99:410,0,493
3    8955240    rs430781    T    C    172.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=14.42;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264926    GT:AD:DP:GQ:PL    0/1:6,6:12:99:203,0,213
3    8955389    rs373572    C    T    703.43    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=2.959;DB;DP=38;Dels=0.0;FS=1.451;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.141;QD=18.51;ReadPosRankSum=1.049;SNPEFF_AMINO_ACID_CHANGE=R302Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_8955328_8955404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264926    GT:AD:DP:GQ:PL    0/1:14,24:38:99:733,0,350
3    8988809    rs689296    C    T    1314.94    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.469;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.76;MQ0=0;MQRankSum=-0.653;QD=16.64;ReadPosRankSum=0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264926    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1345,0,1183
3    9027704    rs341785    A    G    32.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.42;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360413    GT:AD:DP:GQ:PL    0/1:4,2:6:62.50:63,0,131
3    9055293    rs35295033    G    T    100.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.58;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433332    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,139
3    9066853    rs421041    T    C    512.82    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.239;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=13.86;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360413    GT:AD:DP:GQ:PL    0/1:21,16:37:99:543,0,728
3    9069747    rs416685    A    G    463.53    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.662;DB;DP=45;Dels=0.0;FS=1.238;HRun=0;HaplotypeScore=0.7887;MQ=59.59;MQ0=0;MQRankSum=-1.426;QD=10.3;ReadPosRankSum=0.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360413    GT:AD:DP:GQ:PL    0/1:24,21:45:99:494,0,797
3    9069873    rs10510396    A    G    193.27    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=2.853;QD=9.66;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360413    GT:AD:DP:GQ:PL    0/1:13,7:20:99:223,0,435
3    9089254    rs2244864    C    G    184.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.37;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360413    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,180
3    9094673    .    G    T    54.29    QDFilter2    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DP=37;Dels=0.0;FS=3.01;HRun=2;HaplotypeScore=3.8616;MQ=45.92;MQ0=0;MQRankSum=-1.991;QD=1.47;ReadPosRankSum=1.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360413    GT:AD:DP:GQ:PL    0/1:17,20:37:84.29:84,0,178
3    9406704    rs11547584    G    A    860.76    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.238;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.62;MQ0=0;MQRankSum=0.556;QD=14.35;ReadPosRankSum=1.015;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THUMPD3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000515662    GT:AD:DP:GQ:PL    0/1:32,28:60:99:891,0,1010
3    9416474    rs2596920    A    G    123.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.74;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THUMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419437    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:154,0,26
3    9422334    rs34405225    TAG    T    447.34    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=4.271;DB;DP=48;FS=6.334;HRun=0;HaplotypeScore=151.3546;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.391;QD=9.32;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THUMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345094    GT:AD:DP:GQ:PL    0/1:33,15:48:99:486,0,1555
3    9425743    rs2600193    A    G    682.80    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.253;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.38;MQ0=0;MQRankSum=-1.242;QD=18.45;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THUMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461636    GT:AD:DP:GQ:PL    0/1:16,21:37:99:713,0,548
3    9489767    rs2258735    T    C    135.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.55;ReadPosRankSum=0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SETD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464410    GT:AD:DP:GQ:PL    0/1:5,5:10:99:165,0,171
3    9548004    rs17815563    G    A    105.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=10.57;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHFPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287585    GT:AD:DP:GQ:PL    0/1:5,5:10:99:136,0,181
3    9730868    rs159142    G    C    104.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.47;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431250    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,220
3    9743398    rs35219906    TGGAG    T    168.82    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=58.2433;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=-0.533;QD=12.99;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296003    GT:AD:DP:GQ:PL    0/1:8,5:13:99:208,0,578
3    9757086    rs697820    C    G    813.22    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=42;Dels=0.0;FS=2.7;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.183;QD=19.36;ReadPosRankSum=-1.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383831    GT:AD:DP:GQ:PL    0/1:17,25:42:99:843,0,542
3    9757754    rs708571    G    A    268.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=17.91;ReadPosRankSum=1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383831    GT:AD:DP:GQ:PL    0/1:5,10:15:99:299,0,162
3    9758664    rs6765151    A    G    356.57    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.619;QD=18.77;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383831    GT:AD:DP:GQ:PL    0/1:8,11:19:99:387,0,255
3    9768336    rs3868893    C    G    1031.71    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.61;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8808;MQ=59.42;MQ0=0;MQRankSum=0.421;QD=14.33;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383831    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1062,0,912
3    9769008    rs3891072    A    T    887.39    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.703;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.59;MQ0=0;MQRankSum=-0.665;QD=15.85;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383831    GT:AD:DP:GQ:PL    0/1:26,30:56:99:917,0,701
3    9799113    rs293795    A    G    588.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411972    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:622,48,0
3    9829226    rs293786    A    C    346.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TADA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439043    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:379,30,0
3    9831112    rs293790    A    G    311.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TADA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439043    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:345,30,0
3    9831680    rs293791    G    C    1357.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TADA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301964    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1390,105,0
3    9854865    rs11708462    A    C    814.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418163    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:847,66,0
3    9854913    rs11720113    C    A    1245.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418163    GT:AD:DP:GQ:PL    1/1:0,36:36:93.31:1279,93,0
3    9857514    rs7652460    A    G    848.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418163    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:882,66,0
3    9860274    rs147069178    G    A    33.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.97;MQ0=0;QD=16.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414814    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
3    9867625    rs3732527    C    T    1235.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=R227;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9867484_9867632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443148    GT:AD:DP:GQ:PL    1/1:0,37:37:93.31:1269,93,0
3    9868577    rs12490900    A    G    335.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=27.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC4-TTLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397256    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:369,30,0
3    9871030    rs2290305    T    G    2404.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=M290R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9870644_9871079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383827    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2438,178,0
3    9874670    rs7622954    G    A    420.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383820    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
3    9875212    rs11926325    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383820    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    9876301    rs13088594    G    T    476.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383820    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:509,39,0
3    9876919    rs1057278    G    A    1648.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=A689T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9876778_9878037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547186    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1681,126,0
3    9876987    rs1057281    G    A    2096.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=R711;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9876778_9878037;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547186    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2130,162,0
3    9881720    rs4299465    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC4-TTLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397256    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    9885022    rs3846165    T    C    712.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.892;MQ=58.95;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383820    GT:AD:DP:GQ:PL    1/1:0,21:22:57.16:746,57,0
3    9932337    rs279558    G    C    159.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_9932238_9932495;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAGN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307768    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:192,15,0
3    9934605    rs279553    T    C    925.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=T32;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9934599_9936033;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAGN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307768    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:958,72,0
3    9944937    rs279588    G    T    215.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL17RE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295980    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
3    9947997    rs279581    C    T    413.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL17RE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461534    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:446,36,0
3    9948241    rs279580    G    A    638.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL17RE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461534    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:671,54,0
3    9952706    rs279572    A    G    1483.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=T203;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9952549_9952724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL17RE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441648    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1517,123,0
3    9952788    rs279571    T    C    2140.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.32;MQ0=0;QD=31.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL17RE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454992    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2174,171,0
3    9953470    rs279570    T    C    112.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL17RE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444427    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:145,12,0
3    9956279    rs455863    G    A    2686.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=59.68;MQ0=0;QD=37.31;SNPEFF_AMINO_ACID_CHANGE=G473R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9956159_9956283;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL17RE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454190    GT:AD:DP:GQ:PL    1/1:0,71:72:99:2719,202,0
3    9957455    rs1056286    C    T    141.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.18;SNPEFF_AMINO_ACID_CHANGE=L539;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9956935_9958079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL17RE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441648    GT:AD:DP:GQ:PL    1/1:0,10:10:12.04:174,12,0
3    9959713    rs4686383    C    T    310.13    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=2.041;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=25.84;ReadPosRankSum=0.537;SNPEFF_AMINO_ACID_CHANGE=T149;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9959607_9959759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295981    GT:AD:DP:GQ:PL    0/1:2,10:12:38.27:340,0,38
3    9960070    rs708567    C    T    439.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_AMINO_ACID_CHANGE=S111L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9960019_9960093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383812    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:472,36,0
3    9962157    rs783494    T    C    160.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469686    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
3    9962767    rs34198416    TATTC    T    200.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=33.8435;IndelType=D;MQ=54.48;MQ0=1;QD=25.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440502    GT:AD:DP:GQ:PL    1/1:3,5:7:15.05:242,15,0
3    9969932    rs35444385    TGG    T    1369.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.942;DB;DP=74;FS=1.936;HRun=4;HaplotypeScore=259.9439;IndelType=D;MQ=59.67;MQ0=0;MQRankSum=0.017;QD=18.5;ReadPosRankSum=1.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424206    GT:AD:DP:GQ:PL    0/1:37,37:74:99:1408,0,1768
3    9970031    rs279549    A    G    1495.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=Q163R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9969989_9970170;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416074    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1528,117,0
3    9970158    rs279548    C    T    1191.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.759;DB;DP=79;Dels=0.0;FS=1.478;HRun=0;HaplotypeScore=3.7136;MQ=59.71;MQ0=0;MQRankSum=-0.749;QD=15.08;ReadPosRankSum=-0.138;SNPEFF_AMINO_ACID_CHANGE=N205;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9969989_9970170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416074    GT:AD:DP:GQ:PL    0/1:39,39:79:99:1221,0,1276
3    9970442    rs279547    C    T    249.74    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.663;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.66;QD=9.61;ReadPosRankSum=0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424206    GT:AD:DP:GQ:PL    0/1:16,10:26:99:280,0,531
3    9972493    rs279545    G    A    890.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=31.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412901    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:923,75,0
3    9975247    rs183956    C    G    248.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_AMINO_ACID_CHANGE=G537;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9974637_9975304;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416074    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
3    9975353    rs279551    A    G    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295981    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
3    9976159    rs279552    A    G    1170.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=30.8;SNPEFF_AMINO_ACID_CHANGE=M13V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9976104_9976296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRELD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326434    GT:AD:DP:GQ:PL    1/1:0,36:38:93.25:1203,93,0
3    9991388    rs279601    G    C    1376.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_AMINO_ACID_CHANGE=Q138E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_9990785_9991856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRRT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411976    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1409,105,0
3    10030236    rs496181    T    C    144.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.83;MQ0=0;QD=24.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM111;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470827    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:177,15,0
3    10044262    rs452792    G    A    242.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM111;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470827    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
3    10074529    rs45510294    A    C    1754.21    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.829;DB;DP=132;Dels=0.0;FS=0.651;HRun=2;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=-0.105;QD=13.29;ReadPosRankSum=0.843;SNPEFF_AMINO_ACID_CHANGE=Q26H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10074516_10074656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:63,69:132:99:1784,0,1899
3    10085035    rs803335    G    T    135.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431693    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
3    10088299    rs112887807    C    T    54.77    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.337;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1623;MQ=47.17;MQ0=0;MQRankSum=-1.691;QD=1.1;ReadPosRankSum=0.245;SNPEFF_AMINO_ACID_CHANGE=S390;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10088264_10088407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:40,10:50:84.76:85,0,1222
3    10088308    rs72492998    T    C    54.87    QDFilter2    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=0.173;DB;DP=47;Dels=0.0;FS=3.837;HRun=1;HaplotypeScore=0.6651;MQ=46.81;MQ0=0;MQRankSum=-1.798;QD=1.17;ReadPosRankSum=0.439;SNPEFF_AMINO_ACID_CHANGE=T393;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10088264_10088407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:36,11:47:84.86:85,0,1156
3    10088343    rs73126218    A    G    75.52    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=54;Dels=0.0;FS=1.486;HRun=0;HaplotypeScore=0.0;MQ=44.73;MQ0=1;MQRankSum=-1.753;QD=1.4;ReadPosRankSum=1.838;SNPEFF_AMINO_ACID_CHANGE=N405S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10088264_10088407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:42,12:54:99:106,0,1250
3    10089480    rs116621886    C    T    192.85    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.757;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=52.51;MQ0=0;MQRankSum=-4.18;QD=4.82;ReadPosRankSum=-1.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:29,11:40:99:223,0,1081
3    10089497    rs114101942    C    T    240.17    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.664;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=51.9;MQ0=0;MQRankSum=-4.99;QD=5.11;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:33,14:47:99:270,0,1216
3    10089499    .    A    G    247.69    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.062;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=51.71;MQ0=0;MQRankSum=-4.5;QD=5.38;ReadPosRankSum=-0.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:32,14:46:99:278,0,1122
3    10089509    rs77520528    A    G    221.93    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.281;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.97;MQ0=0;MQRankSum=-5.62;QD=3.83;ReadPosRankSum=1.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:41,17:58:99:252,0,1491
3    10089549    rs113574694    TACTA    T    242.07    PASS    AB=0.889;AC=1;AF=0.50;AN=2;BaseQRankSum=4.844;DB;DP=82;FS=7.127;HRun=0;HaplotypeScore=486.9397;IndelType=D;MQ=54.68;MQ0=1;MQRankSum=-4.812;QD=2.75;ReadPosRankSum=0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:77,11:82:99:281,0,5277
3    10089723    rs12330369    G    A    293.45    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7687;MQ=53.49;MQ0=1;MQRankSum=-4.051;QD=3.97;ReadPosRankSum=-0.669;SNPEFF_AMINO_ACID_CHANGE=T467;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10089601_10089735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:52,22:74:99:323,0,1729
3    10089738    rs62245508    A    G    135.89    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5386;MQ=52.93;MQ0=1;MQRankSum=-4.727;QD=2.09;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:47,18:65:99:166,0,1605
3    10089749    rs12330599    T    C    76.09    QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.176;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4509;MQ=53.49;MQ0=0;MQRankSum=-4.607;QD=1.33;ReadPosRankSum=-0.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483276    GT:AD:DP:GQ:PL    0/1:43,14:57:99:106,0,1471
3    10089815    rs77169020    A    C    55.59    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.46;MQ0=0;MQRankSum=-3.215;QD=3.27;ReadPosRankSum=-1.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483276    GT:AD:DP:GQ:PL    0/1:12,5:17:85.59:86,0,413
3    10089828    rs77263972    G    A    37.20    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.27;MQ0=0;MQRankSum=-2.637;QD=3.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483276    GT:AD:DP:GQ:PL    0/1:8,4:12:67.20:67,0,303
3    10089834    rs74351786    A    T    37.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.27;MQ0=0;MQRankSum=-2.637;QD=3.1;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483276    GT:AD:DP:GQ:PL    0/1:8,4:12:67.20:67,0,284
3    10089841    rs74509181    C    A    43.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.34;MQ0=0;MQRankSum=-2.383;QD=4.32;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483276    GT:AD:DP:GQ:PL    0/1:6,4:10:73.22:73,0,222
3    10089852    rs75274508    A    G    46.23    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.01;MQ0=0;MQRankSum=-2.219;QD=5.14;ReadPosRankSum=2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483276    GT:AD:DP:GQ:PL    0/1:5,4:9:76.23:76,0,185
3    10089886    rs73811818    G    T    52.25    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.99;MQ0=0;MQRankSum=-1.754;QD=7.46;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483276    GT:AD:DP:GQ:PL    0/1:3,4:7:82.25:82,0,109
3    10091035    rs10222446    T    C    593.94    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=3.678;DB;DP=88;Dels=0.0;FS=1.038;HRun=1;HaplotypeScore=0.734;MQ=45.99;MQ0=11;MQRankSum=-7.036;QD=6.75;ReadPosRankSum=0.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483276    GT:AD:DP:GQ:PL    0/1:47,41:88:99:624,0,1540
3    10103811    rs34177396    TA    T    331.19    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=3.587;DB;DP=33;FS=12.095;HRun=9;HaplotypeScore=77.5034;IndelType=D;MQ=54.79;MQ0=0;MQRankSum=2.115;QD=10.04;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    0/1:16,17:33:99:370,0,422
3    10105847    rs2347585    A    G    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287647    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
3    10122745    rs45622438    C    T    422.24    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=36;Dels=0.0;FS=1.998;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.583;QD=11.73;ReadPosRankSum=-0.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C3orf24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431315    GT:AD:DP:GQ:PL    0/1:21,15:36:99:452,0,657
3    10142949    rs3172417    C    T    297.73    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.554;DB;DP=27;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=0.9665;MQ=55.58;MQ0=0;MQRankSum=0.962;QD=11.03;ReadPosRankSum=0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C3orf24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450660    GT:AD:DP:GQ:PL    0/1:16,11:27:99:328,0,484
3    10188363    rs34661876    A    G    646.94    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.211;DB;DP=52;Dels=0.0;FS=11.591;HRun=0;HaplotypeScore=0.9989;MQ=58.47;MQ0=0;MQRankSum=0.775;QD=12.44;ReadPosRankSum=0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256474    GT:AD:DP:GQ:PL    0/1:30,21:52:99:677,0,942
3    10188428    rs1678607    T    G    550.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256474    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:583,45,0
3    10219729    rs1681663    A    G    346.65    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.692;QD=15.76;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    0/1:10,12:22:99:377,0,249
3    10241875    rs696041    C    T    477.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.524;QD=23.89;ReadPosRankSum=-0.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    0/1:5,15:20:99:508,0,102
3    10241899    rs263409    G    A    962.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:996,75,0
3    10241987    rs263410    A    C    1039.52    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=0.218;DB;DP=88;Dels=0.0;FS=6.599;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=11.81;ReadPosRankSum=-1.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    0/1:49,39:88:99:1070,0,1561
3    10242243    rs263411    G    A    496.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.946;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.298;QD=16.56;ReadPosRankSum=1.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    0/1:10,20:30:99:527,0,333
3    10251196    rs459864    A    G    2129.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.2;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2163,166,0
3    10258493    rs2302862    T    C    969.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:1002,72,0
3    10258514    rs2302861    T    C    1302.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=38.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1336,102,0
3    10258762    rs2302860    G    C    1261.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1294,111,0
3    10261237    rs3895949    A    C    50.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    10261248    rs3895948    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    10261294    rs3895947    A    G    71.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:103,9,0
3    10261594    rs11465911    C    T    83.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    10264480    rs3844283    C    G    2198.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_AMINO_ACID_CHANGE=L392V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10264320_10264515;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2231,166,0
3    10276163    rs708035    T    A    1236.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4932;MQ=58.74;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=D431E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10276143_10276343;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1269,96,0
3    10280233    rs778044    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    10280753    rs11465932    G    A    288.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=24.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,12:12:27.07:322,27,0
3    10283670    rs56369677    G    GA    109.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=7;FS=0.0;HRun=13;HaplotypeScore=35.4926;IndelType=I;MQ=64.48;MQ0=0;MQRankSum=0.742;QD=15.58;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:1,6:7:0.44:147,0,0
3    10283716    rs796552    A    G    766.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.46;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256458    GT:AD:DP:GQ:PL    1/1:0,22:22:66.19:800,66,0
3    10290839    rs2072577    G    A    157.55    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=12.12;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287652    GT:AD:DP:GQ:PL    0/1:6,7:13:99:188,0,205
3    10302172    rs394558    G    A    657.79    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.607;DB;DP=49;Dels=0.0;FS=2.553;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.33;QD=13.42;ReadPosRankSum=-1.202;SNPEFF_AMINO_ACID_CHANGE=V256I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10301821_10302354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287652    GT:AD:DP:GQ:PL    0/1:25,24:49:99:688,0,810
3    10302369    rs451952    T    C    815.04    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.104;DB;DP=66;Dels=0.0;FS=3.095;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.809;QD=12.35;ReadPosRankSum=-0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287652    GT:AD:DP:GQ:PL    0/1:36,29:66:99:845,0,1129
3    10302395    rs439483    G    C    621.79    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=13.52;ReadPosRankSum=0.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287652    GT:AD:DP:GQ:PL    0/1:24,22:46:99:652,0,844
3    10302479    rs402330    G    A    301.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287652    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:334,27,0
3    10318230    rs35845263    A    AT    284.63    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=3.009;DB;DP=28;FS=0.0;HRun=1;HaplotypeScore=111.9189;IndelType=I;MQ=52.09;MQ0=0;MQRankSum=-4.192;QD=10.17;ReadPosRankSum=1.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287652    GT:AD:DP:GQ:PL    0/1:19,9:28:99:324,0,620
3    10318258    .    AT    A    242.37    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=3.433;DP=26;FS=0.0;HRun=2;HaplotypeScore=129.6432;IndelType=D;MQ=51.43;MQ0=0;MQRankSum=-4.0;QD=9.32;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287652    GT:AD:DP:GQ:PL    0/1:17,9:26:99:281,0,550
3    10320865    rs2075355    A    G    136.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=12.38;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TATDN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426850    GT:AD:DP:GQ:PL    0/1:6,5:11:99:166,0,215
3    10328250    rs35683    A    C    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425479    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
3    10342876    rs696221    C    T    2047.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=35.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476597    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2081,159,0
3    10345921    rs40515    C    T    432.11    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=35;Dels=0.0;FS=7.574;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.126;QD=12.35;ReadPosRankSum=-0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337354    GT:AD:DP:GQ:PL    0/1:17,18:35:99:462,0,557
3    10346996    rs34924741    T    TA    131.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=8;HaplotypeScore=15.3263;IndelType=I;MQ=60.0;MQ0=0;QD=21.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337354    GT:AD:DP:GQ:PL    1/1:1,5:6:15.04:173,15,0
3    10353550    rs35670    T    C    148.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=14.84;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G183;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10353257_10353782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEC13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397105    GT:AD:DP:GQ:PL    0/1:4,6:10:99:178,0,132
3    10353626    rs35671    C    T    224.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.43;DB;DP=30;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=0.8667;MQ=59.23;MQ0=0;MQRankSum=-0.11;QD=7.48;ReadPosRankSum=-0.77;SNPEFF_AMINO_ACID_CHANGE=R158H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10353257_10353782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEC13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397105    GT:AD:DP:GQ:PL    0/1:20,10:30:99:254,0,526
3    10370486    rs4327369    G    C    122.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=15;Dels=0.0;FS=8.616;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=8.15;ReadPosRankSum=0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468426    GT:AD:DP:GQ:PL    0/1:9,6:15:99:152,0,241
3    10379923    rs35678    C    T    760.62    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=37;Dels=0.0;FS=5.225;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.207;QD=20.56;ReadPosRankSum=0.239;SNPEFF_AMINO_ACID_CHANGE=A1054;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10379860_10380042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535386    GT:AD:DP:GQ:PL    0/1:13,24:37:99:791,0,378
3    10381784    rs154243    A    G    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
3    10382111    rs171337    T    C    1132.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.43;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1165,90,0
3    10382148    rs154242    G    A    1316.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=58.2;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1350,105,0
3    10387059    rs241509    C    A    316.48    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.472;DB;DP=26;Dels=0.0;FS=1.935;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.087;QD=12.17;ReadPosRankSum=0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    0/1:14,12:26:99:346,0,388
3    10400231    rs3774178    T    C    43.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
3    10400643    rs28113    G    A    165.16    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9243;MQ=58.2;MQ0=0;MQRankSum=-1.635;QD=12.7;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    0/1:6,7:13:99:195,0,175
3    10401856    rs2278554    G    T    114.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.28;MQ0=0;MQRankSum=1.092;QD=8.15;ReadPosRankSum=2.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    0/1:8,6:14:99:144,0,269
3    10413341    rs55970333    C    G    67.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=7.46;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    0/1:6,3:9:97.11:97,0,200
3    10413715    rs2289274    G    A    542.65    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.778;DB;DP=44;Dels=0.0;FS=1.35;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.346;QD=12.33;ReadPosRankSum=0.967;SNPEFF_AMINO_ACID_CHANGE=N335;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10413493_10413735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452124    GT:AD:DP:GQ:PL    0/1:26,18:44:99:573,0,854
3    10427017    rs73014694    G    C    85.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=9.54;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480680    GT:AD:DP:GQ:PL    0/1:4,5:9:99:116,0,102
3    10428339    rs41293351    C    T    153.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.13;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480680    GT:AD:DP:GQ:PL    0/1:3,5:8:90.79:183,0,91
3    10429908    rs45596135    A    T    2001.61    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.067;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7195;MQ=59.04;MQ0=0;MQRankSum=0.349;QD=16.54;ReadPosRankSum=2.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    0/1:54,67:121:99:2032,0,1679
3    10442439    rs9647359    G    A    71.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
3    10442779    rs26797    C    T    31.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=3.99;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342354    GT:AD:DP:GQ:PL    0/1:5,2:8:61.92:62,0,176
3    10967739    rs2272395    T    C    2458.46    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.383;DB;DP=203;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.997;MQ=59.55;MQ0=0;MQRankSum=1.612;QD=12.11;ReadPosRankSum=1.003;SNPEFF_AMINO_ACID_CHANGE=P390;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10967690_10967802;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254488    GT:AD:DP:GQ:PL    0/1:104,98:203:99:2488,0,2998
3    10975994    rs4434127    G    C    78.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.69;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254488    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:108,0,69
3    10976876    rs2245532    A    G    665.04    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.768;DB;DP=68;Dels=0.0;FS=2.51;HRun=0;HaplotypeScore=1.9226;MQ=60.0;MQ0=0;MQRankSum=0.369;QD=9.78;ReadPosRankSum=1.108;SNPEFF_AMINO_ACID_CHANGE=T579;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_10976715_10976885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254488    GT:AD:DP:GQ:PL    0/1:43,25:68:99:695,0,1173
3    11059847    rs2928078    G    A    196.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425938    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
3    11075503    rs2246543    T    C    396.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287766    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:430,33,0
3    11276399    rs347614    T    C    418.94    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.921;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=17.46;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413416    GT:AD:DP:GQ:PL    0/1:7,17:24:99:449,0,223
3    11300707    rs901865    T    C    1038.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_11300689_11300761;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413416    GT:AD:DP:GQ:PL    1/1:0,31:31:81.25:1071,81,0
3    11518755    rs4684782    T    C    379.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354449    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:412,36,0
3    11551856    .    TA    T    59.25    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.866;DP=52;FS=0.0;HRun=15;HaplotypeScore=316.278;IndelType=D;MQ=56.69;MQ0=0;MQRankSum=1.097;QD=1.14;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354449    GT:AD:DP:GQ:PL    0/1:36,11:52:98.28:98,0,549
3    11643465    rs2276749    T    C    924.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_AMINO_ACID_CHANGE=I28M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_11643307_11643496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGLL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458499    GT:AD:DP:GQ:PL    1/1:0,31:31:72.23:957,72,0
3    11667714    rs3856802    C    T    300.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273038    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:333,24,0
3    11831953    rs9267    C    T    1228.82    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.358;DB;DP=98;Dels=0.0;FS=8.025;HRun=0;HaplotypeScore=1.7608;MQ=59.76;MQ0=0;MQRankSum=-0.235;QD=12.54;ReadPosRankSum=0.612;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAMM41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414736    GT:AD:DP:GQ:PL    0/1:51,47:98:99:1259,0,1692
3    11848923    rs3839098    CCACT    C    574.86    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=70.4077;IndelType=D;MQ=56.52;MQ0=0;MQRankSum=-0.888;QD=41.06;ReadPosRankSum=-0.691;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_11848768_11849369;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAMM41;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000444133    GT:AD:DP:GQ:PL    0/1:3,11:14:99:614,0,135
3    11871215    rs11551661    T    C    1829.06    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.523;DB;DP=136;Dels=0.0;FS=7.801;HRun=0;HaplotypeScore=1.8932;MQ=59.83;MQ0=0;MQRankSum=0.426;QD=13.45;ReadPosRankSum=-0.136;SNPEFF_AMINO_ACID_CHANGE=I179V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_11871188_11871338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAMM41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273037    GT:AD:DP:GQ:PL    0/1:72,63:136:99:1859,0,2044
3    11880816    rs303862    C    A    329.83    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.608;QD=16.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAMM41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494388    GT:AD:DP:GQ:PL    0/1:9,11:20:99:360,0,264
3    11885815    rs303854    T    C    55.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.94;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAMM41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273037    GT:AD:DP:GQ:PL    0/1:4,3:7:85.57:86,0,142
3    11887991    rs408600    C    G    327    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.379;DB;DP=39;Dels=0.0;FS=1.377;HRun=2;HaplotypeScore=1.9025;MQ=60.0;MQ0=0;MQRankSum=-1.152;QD=8.38;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=P40;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_11887976_11888393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAMM41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273037    GT:AD:DP:GQ:PL    0/1:23,16:39:99:357,0,622
3    11912622    rs450931    G    A    155.56    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.99;MQ0=0;MQRankSum=-2.228;QD=14.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC090958.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437591    GT:AD:DP:GQ:PL    0/1:4,7:11:99:186,0,131
3    11912797    rs62246062    C    T    663.48    MQFilter40    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.182;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.16;MQ0=10;MQRankSum=-6.329;QD=10.05;ReadPosRankSum=0.266;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC090958.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437591    GT:AD:DP:GQ:PL    0/1:23,43:66:99:693,0,685
3    11925274    rs182632659    A    T    91.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.517;DB;DP=17;Dels=0.0;FS=23.314;HRun=0;HaplotypeScore=0.0;MQ=41.48;MQ0=2;MQRankSum=-3.163;QD=5.37;ReadPosRankSum=0.065;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC090958.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437591    GT:AD:DP:GQ:PL    0/1:8,8:17:99:121,0,269
3    11925277    rs2470563    C    T    85.29    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=19;Dels=0.0;FS=21.553;HRun=2;HaplotypeScore=0.7887;MQ=42.9;MQ0=2;MQRankSum=-3.308;QD=4.49;ReadPosRankSum=1.464;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC090958.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437591    GT:AD:DP:GQ:PL    0/1:11,8:19:99:115,0,356
3    11925358    rs2470562    T    C    438.41    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.82;MQ0=0;MQRankSum=-3.086;QD=12.53;ReadPosRankSum=0.281;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC090958.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437591    GT:AD:DP:GQ:PL    0/1:17,18:35:99:468,0,576
3    11925489    rs2470561    C    T    529.90    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.104;DB;DP=68;Dels=0.0;FS=6.169;HRun=1;HaplotypeScore=2.4021;MQ=46.85;MQ0=4;MQRankSum=-6.191;QD=7.79;ReadPosRankSum=-1.983;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC090958.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437591    GT:AD:DP:GQ:PL    0/1:36,32:68:99:560,0,1178
3    11925610    rs421090    C    T    728.21    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.65;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7219;MQ=52.73;MQ0=0;MQRankSum=-5.062;QD=11.94;ReadPosRankSum=0.802;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC090958.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437591    GT:AD:DP:GQ:PL    0/1:32,29:61:99:758,0,1066
3    12045864    rs80251534    A    T    82.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426379    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    12045891    rs79624759    T    C    282.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_12045876_12046428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426379    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
3    12045899    rs77368781    C    T    199.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_12045876_12046428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426379    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:233,21,0
3    12045923    rs73135622    A    C    359.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_12045876_12046428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426379    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:392,30,0
3    12045986    rs67270413    G    A    326.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=25.14;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_12045876_12046428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426379    GT:AD:DP:GQ:PL    1/1:0,13:13:27.09:360,27,0
3    12046013    rs72624441    A    C    538.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=29.9;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_12045876_12046428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426379    GT:AD:DP:GQ:PL    1/1:0,18:18:48.11:571,48,0
3    12046076    rs2618395    T    C    585.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540660    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:618,51,0
3    12046131    rs74213196    A    C    39.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.44;MQ0=0;QD=5.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540660    GT:AD:DP:GQ:PL    1/1:0,8:8:6.02:71,6,0
3    12046148    rs2623874    C    T    42.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.14;MQ0=0;QD=6.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540660    GT:AD:DP:GQ:PL    1/1:0,7:7:6.02:74,6,0
3    12195622    rs308952    A    G    102.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424884    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:135,12,0
3    12208652    rs795008    A    G    291.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540660    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
3    12208671    rs795009    G    T    414.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540660    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:448,33,0
3    12208995    rs795010    T    A    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540660    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
3    12211046    rs795011    G    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447752    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    12229015    rs794999    A    G    326.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.24;SNPEFF_AMINO_ACID_CHANGE=T438A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12228869_12229112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540660    GT:AD:DP:GQ:PL    1/1:0,12:12:30.04:360,30,0
3    12229237    rs35294573    TG    T    109.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=38.63;IndelType=D;MQ=53.82;MQ0=0;QD=18.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425297    GT:AD:DP:GQ:PL    1/1:1,5:6:12.04:151,12,0
3    12232074    rs310764    A    G    5389.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.178;DB;DP=160;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.51;MQ0=0;MQRankSum=-0.844;QD=33.69;ReadPosRankSum=1.066;SNPEFF_AMINO_ACID_CHANGE=A498;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12231990_12232907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540660    GT:AD:DP:GQ:PL    1/1:1,159:160:99:5390,374,0
3    12232208    rs310765    T    G    670.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432424    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:704,54,0
3    12447153    rs1151999    G    T    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=12.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287820    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
3    12447814    rs1797895    C    G    715.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287820    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:749,54,0
3    12537955    rs299651    T    A    552.53    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DB;DP=37;Dels=0.0;FS=6.303;HRun=0;HaplotypeScore=1.6545;MQ=59.75;MQ0=0;MQRankSum=-0.747;QD=14.93;ReadPosRankSum=-1.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284995    GT:AD:DP:GQ:PL    0/1:17,20:37:99:583,0,598
3    12560763    rs1618545    A    T    614.79    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=16.62;ReadPosRankSum=1.989;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284995    GT:AD:DP:GQ:PL    0/1:14,23:37:99:645,0,408
3    12570572    rs299632    C    T    116.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.59;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446004    GT:AD:DP:GQ:PL    0/1:2,6:8:56.65:147,0,57
3    12613866    rs2648307    T    C    52.63    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=6.58;ReadPosRankSum=-1.517;SNPEFF_AMINO_ACID_CHANGE=H169;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12613568_12613872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKRN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411987    GT:AD:DP:GQ:PL    0/1:5,3:8:82.62:83,0,184
3    12616533    rs3773341    G    A    181.81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=18.18;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170447    GT:AD:DP:GQ:PL    0/1:4,6:10:99:212,0,124
3    12618262    rs9855183    C    T    167.34    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.27;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=1.376;QD=9.84;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170447    GT:AD:DP:GQ:PL    0/1:9,8:17:99:197,0,229
3    12626516    rs3729931    G    A    382.99    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.131;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.932;QD=7.37;ReadPosRankSum=1.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170447    GT:AD:DP:GQ:PL    0/1:31,21:52:99:413,0,844
3    12628920    rs2290159    G    C    505.85    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.596;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=21.08;ReadPosRankSum=-1.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170447    GT:AD:DP:GQ:PL    0/1:9,15:24:99:536,0,303
3    12641518    rs2246390    A    G    430.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.187;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.32;QD=13.45;ReadPosRankSum=-2.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416093    GT:AD:DP:GQ:PL    0/1:16,16:32:99:460,0,545
3    12645007    rs2596828    C    T    552.52    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=3.715;DB;DP=63;Dels=0.0;FS=1.067;HRun=0;HaplotypeScore=0.5784;MQ=59.63;MQ0=0;MQRankSum=1.228;QD=8.77;ReadPosRankSum=-1.023;SNPEFF_AMINO_ACID_CHANGE=A288;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12644977_12645036;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442415    GT:AD:DP:GQ:PL    0/1:41,22:63:99:583,0,1012
3    12650482    rs2454440    T    A    294.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251849    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:327,24,0
3    12660291    rs3729926    C    T    55.50    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=4.63;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251849    GT:AD:DP:GQ:PL    0/1:9,3:12:85.49:85,0,265
3    12776428    rs3732687    A    C    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.57;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485124    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:64,0,67
3    12779409    rs2271209    A    G    53.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.97;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264728    GT:AD:DP:GQ:PL    0/1:6,3:9:83.72:84,0,212
3    12791172    rs937915    T    C    326.68    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.266;QD=16.33;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264728    GT:AD:DP:GQ:PL    0/1:9,11:20:99:357,0,286
3    12828828    rs9822382    T    G    71.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=KRT18P17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396959    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:104,9,0
3    12829036    rs9881832    C    T    346.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=26.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=KRT18P17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396959    GT:AD:DP:GQ:PL    1/1:0,13:13:30.07:379,30,0
3    12829095    rs6799179    A    C    255.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=KRT18P17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396959    GT:AD:DP:GQ:PL    1/1:0,11:11:21.07:289,21,0
3    12829156    rs1969154    A    G    353.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=KRT18P17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396959    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:387,30,0
3    12838293    rs12631514    G    C    210.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:243,18,0
3    12845158    rs9835677    G    A    633.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.84;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:667,51,0
3    12848822    rs11718898    T    C    1735.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.15;SNPEFF_AMINO_ACID_CHANGE=V77A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12848805_12848959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456430    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1768,135,0
3    12849011    rs34529773    TA    T    202.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=85.6412;IndelType=D;MQ=46.55;MQ0=0;QD=15.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    1/1:5,8:13:24.04:245,24,0
3    12849031    rs66701632    C    CA    161.61    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=77.377;IndelType=I;MQ=41.67;MQ0=0;MQRankSum=-0.747;QD=16.16;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    0/1:2,8:10:0.54:199,0,1
3    12851841    rs138042042    G    A    38.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466558    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:68,0,22
3    12856856    rs2305398    A    G    1167.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=Q315R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12856640_12856932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    1/1:0,36:36:93.28:1200,93,0
3    12857493    rs2305397    C    T    880.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.85;SNPEFF_AMINO_ACID_CHANGE=P383L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12857366_12857507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:913,72,0
3    12857823    rs731646    C    T    659.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446928    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:692,51,0
3    12858028    rs3732675    T    C    1078.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=S440P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12857873_12859375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1111,84,0
3    12859004    rs3732678    A    C    648.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.47;SNPEFF_AMINO_ACID_CHANGE=H765P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12857873_12859375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    1/1:0,22:22:54.14:681,54,0
3    12875443    rs12629133    G    A    2298.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_AMINO_ACID_CHANGE=A1108T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12875254_12876301;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295989    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2331,178,0
3    12942850    rs67067889    GC    G    230.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=17.6957;IndelType=D;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_12942348_12943022;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000429247    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
3    12954868    rs2600322    A    G    57.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273221    GT:AD:DP:GQ:PL    1/1:0,4:4:9:89,9,0
3    12956531    rs2255964    G    A    257.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273221    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
3    12962074    rs35319679    G    A    1004.90    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=55;Dels=0.0;FS=3.511;HRun=0;HaplotypeScore=0.9665;MQ=59.16;MQ0=0;MQRankSum=0.401;QD=18.27;ReadPosRankSum=0.213;SNPEFF_AMINO_ACID_CHANGE=P626S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_12961930_12962096;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429247    GT:AD:DP:GQ:PL    0/1:23,32:55:99:1035,0,744
3    12963445    rs2252275    T    A    223.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273221    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:257,21,0
3    12976863    rs2600206    T    C    119.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.94;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473088    GT:AD:DP:GQ:PL    0/1:2,4:6:61.90:150,0,62
3    12983423    rs72624443    C    T    106.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.79;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273221    GT:AD:DP:GQ:PL    0/1:2,4:6:55.05:137,0,55
3    13114246    rs462825    C    G    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429247    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    13114408    rs463268    A    C    122.93    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.322;QD=13.66;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429247    GT:AD:DP:GQ:PL    0/1:3,5:9:93.80:153,0,94
3    13361238    rs2276748    C    T    103.02    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.633;QD=8.59;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:7,4:11:99:133,0,221
3    13361287    rs354478    C    T    184.96    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.904;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7568;MQ=57.12;MQ0=0;MQRankSum=-0.807;QD=8.04;ReadPosRankSum=0.549;SNPEFF_AMINO_ACID_CHANGE=V1787M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13361263_13361479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:15,8:23:99:215,0,483
3    13361391    rs354479    A    G    39.86    QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=22;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.962;QD=1.81;ReadPosRankSum=-0.057;SNPEFF_AMINO_ACID_CHANGE=L1752S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13361263_13361479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:17,5:22:69.85:70,0,442
3    13364876    rs514084    G    T    955.90    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.927;DB;DP=69;Dels=0.0;FS=1.008;HRun=1;HaplotypeScore=1.8646;MQ=59.67;MQ0=0;MQRankSum=-2.052;QD=13.85;ReadPosRankSum=-0.044;SNPEFF_AMINO_ACID_CHANGE=T1567;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13364809_13364932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:34,35:69:99:986,0,866
3    13367406    rs665064    C    T    867.45    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=4.267;DB;DP=71;Dels=0.0;FS=2.127;HRun=0;HaplotypeScore=0.9999;MQ=59.68;MQ0=0;MQRankSum=-0.648;QD=12.22;ReadPosRankSum=-0.303;SNPEFF_AMINO_ACID_CHANGE=S1511;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13367295_13367431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:40,31:71:99:897,0,1086
3    13368892    rs2271509    G    A    52.06    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.0;QD=4.34;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=C1444;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13368717_13368937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:9,3:12:82.06:82,0,262
3    13376795    rs13098069    G    A    56.64    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.192;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.344;QD=4.05;ReadPosRankSum=-0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485755    GT:AD:DP:GQ:PL    0/1:10,4:14:86.64:87,0,315
3    13379400    rs3773302    C    T    208.61    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.824;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-0.099;QD=9.07;ReadPosRankSum=-0.89;SNPEFF_AMINO_ACID_CHANGE=E1163;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13379337_13379417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:12,10:23:99:239,0,315
3    13383100    rs75100230    G    A    105.94    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=11.77;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,158
3    13383540    rs2271504    A    G    588.69    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=48;Dels=0.0;FS=4.309;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=12.26;ReadPosRankSum=-1.409;SNPEFF_AMINO_ACID_CHANGE=F1016;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13383496_13383623;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:20,28:48:99:619,0,693
3    13395579    rs2280084    C    A    68.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.48;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=R786L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13395415_13395607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:3,3:6:90.93:99,0,91
3    13399786    rs6795271    G    A    681.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.897;DB;DP=40;Dels=0.0;FS=2.784;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=17.04;ReadPosRankSum=0.649;SNPEFF_AMINO_ACID_CHANGE=A755V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13399722_13399895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:16,24:40:99:712,0,409
3    13399948    rs6807718    T    C    32.50    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.64;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:4,3:7:62.49:62,0,137
3    13407556    rs3732671    T    C    168.89    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.868;QD=11.26;ReadPosRankSum=0.637;SNPEFF_AMINO_ACID_CHANGE=I608V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13407446_13407591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:8,7:15:99:199,0,246
3    13415146    rs6810356    G    T    52.39    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=6.55;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:5,3:8:82.39:82,0,172
3    13419123    rs35998066    T    TG    630.28    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.978;DB;DP=32;FS=0.0;HRun=3;HaplotypeScore=86.8311;IndelType=I;MQ=59.28;MQ0=0;MQRankSum=-0.157;QD=19.7;ReadPosRankSum=-0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:14,18:32:99:669,0,309
3    13420624    rs6442378    G    A    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,101
3    13421150    rs7628051    C    T    715.21    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=3.574;DB;DP=53;Dels=0.0;FS=6.616;HRun=1;HaplotypeScore=1.9787;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=13.49;ReadPosRankSum=1.456;SNPEFF_AMINO_ACID_CHANGE=A297T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13421063_13421221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:29,24:53:99:745,0,905
3    13427998    rs6442380    G    T    319.68    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=22;Dels=0.0;FS=5.076;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.692;QD=14.53;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:10,12:22:99:350,0,280
3    13438830    rs13066607    A    G    279.99    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.514;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=58.89;MQ0=0;MQRankSum=0.246;QD=13.33;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP210;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254508    GT:AD:DP:GQ:PL    0/1:11,10:21:99:310,0,373
3    13522973    rs2675232    C    T    248.43    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.929;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=9.94;ReadPosRankSum=-0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295757    GT:AD:DP:GQ:PL    0/1:14,11:25:99:278,0,445
3    13523010    rs2655218    T    C    464.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295757    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:498,42,0
3    13524741    rs2630455    T    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295757    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
3    13538012    rs2290193    A    C    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295757    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:68,0,67
3    13544310    rs2290197    G    A    1156.07    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.283;DB;DP=86;Dels=0.0;FS=2.736;HRun=0;HaplotypeScore=0.5784;MQ=59.24;MQ0=0;MQRankSum=1.937;QD=13.44;ReadPosRankSum=0.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458642    GT:AD:DP:GQ:PL    0/1:46,40:86:99:1186,0,1373
3    13612936    rs3732666    A    G    494.87    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.908;DB;DP=29;Dels=0.0;FS=6.615;HRun=1;HaplotypeScore=0.9997;MQ=59.36;MQ0=0;MQRankSum=-0.509;QD=17.06;ReadPosRankSum=-0.642;SNPEFF_AMINO_ACID_CHANGE=S361G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13611815_13613161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295760    GT:AD:DP:GQ:PL    0/1:12,17:29:99:525,0,351
3    13649762    rs2276747    G    A    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295760    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
3    13659897    rs4596126    A    C    111.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.684;QD=12.34;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295760    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,102
3    13663559    rs3773263    C    T    144.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.001;QD=16.02;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477845    GT:AD:DP:GQ:PL    0/1:3,6:9:69.31:174,0,69
3    13669537    rs1966825    T    G    350.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.276;DB;DP=21;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.427;QD=16.68;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295760    GT:AD:DP:GQ:PL    0/1:9,12:21:99:380,0,234
3    13669664    rs2167197    G    C    36.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.21;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295760    GT:AD:DP:GQ:PL    0/1:3,2:5:66.03:66,0,103
3    13670481    rs2242023    A    G    146.79    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=41;Dels=0.0;FS=1.481;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.389;QD=3.58;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=T835;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13670405_13670548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295760    GT:AD:DP:GQ:PL    0/1:32,9:41:99:177,0,972
3    13670536    rs9843344    A    G    55.79    QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=1.703;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8662;MQ=59.25;MQ0=0;MQRankSum=-0.318;QD=1.8;ReadPosRankSum=0.144;SNPEFF_AMINO_ACID_CHANGE=T854A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13670405_13670548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295760    GT:AD:DP:GQ:PL    0/1:26,5:31:85.78:86,0,760
3    13678173    rs2290188    G    T    125.51    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.0;QD=9.65;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295760    GT:AD:DP:GQ:PL    0/1:8,5:13:99:156,0,247
3    13860957    rs79020924    A    G    174.94    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=26;Dels=0.0;FS=2.006;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.22;QD=6.73;ReadPosRankSum=0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285018    GT:AD:DP:GQ:PL    0/1:14,12:26:99:205,0,411
3    13895817    rs3762720    C    G    207.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285018    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
3    13896140    rs3762719    A    G    3457.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.078;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.098;QD=31.43;ReadPosRankSum=0.425;SNPEFF_AMINO_ACID_CHANGE=S153;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13896029_13896300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285018    GT:AD:DP:GQ:PL    1/1:1,109:110:99:3457,232,0
3    13896284    rs12639607    C    T    916.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_AMINO_ACID_CHANGE=A105;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_13896029_13896300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285018    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:950,72,0
3    13916794    rs41284007    G    T    31.26    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285018    GT:AD:DP:GQ:PL    0/1:3,2:5:61.25:61,0,101
3    14180552    rs2607767    A    G    123.91    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.07;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.847;QD=7.29;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306077    GT:AD:DP:GQ:PL    0/1:9,8:17:99:154,0,310
3    14197987    rs2958057    A    T    4072.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.81;MQ=59.66;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=A590;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_14197835_14197995;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449060    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4072,307,0
3    14239517    rs3214856    GT    G    182.32    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=4.01;DB;DP=37;FS=5.717;HRun=9;HaplotypeScore=87.5254;IndelType=D;MQ=60.58;MQ0=0;MQRankSum=0.52;QD=4.93;ReadPosRankSum=-1.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306024    GT:AD:DP:GQ:PL    0/1:24,13:37:99:221,0,718
3    14485484    rs36107877    C    A    63.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=10;Dels=0.0;FS=6.854;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.159;QD=6.39;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360861    GT:AD:DP:GQ:PL    0/1:6,4:10:93.92:94,0,177
3    14488866    rs56833455    A    T    365.34    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.02;QD=22.83;ReadPosRankSum=1.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428884    GT:AD:DP:GQ:PL    0/1:5,11:16:99:395,0,157
3    14489370    rs2304511    G    T    109.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=9.16;ReadPosRankSum=-1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428884    GT:AD:DP:GQ:PL    0/1:6,6:12:99:140,0,214
3    14526538    rs1062540    G    A    70.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.05;MQ0=0;MQRankSum=0.988;QD=8.8;ReadPosRankSum=0.406;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360861    GT:AD:DP:GQ:PL    0/1:4,4:8:98.37:100,0,98
3    14536202    rs4685167    G    C    208.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
3    14538072    rs74739633    CA    C    164.58    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=3.241;DB;DP=24;FS=0.0;HRun=2;HaplotypeScore=64.5891;IndelType=D;MQ=58.52;MQ0=0;MQRankSum=1.57;QD=6.86;ReadPosRankSum=0.234;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    0/1:17,7:24:99:204,0,651
3    14548208    rs2276756    G    A    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    14548494    rs2276755    A    G    124.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
3    14551444    rs9845816    A    G    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    14552994    rs4685168    A    G    396.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,13:13:36.08:429,36,0
3    14554476    rs4516597    T    C    553.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:587,45,0
3    14554608    rs11128703    C    T    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
3    14555009    rs4685170    C    T    148.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=29.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:181,15,0
3    14555216    rs4685171    T    C    857.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=53.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,39:39:72.17:890,72,0
3    14555367    rs4685172    T    C    410.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:444,33,0
3    14555409    rs28520469    T    C    238.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
3    14555411    rs28462294    A    C    234.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:267,21,0
3    14555811    rs4613440    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
3    14558455    rs150652797    G    A    153.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=19.13;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413414    GT:AD:DP:GQ:PL    0/1:3,5:8:83.38:183,0,83
3    14561627    rs5846840    A    AG    390.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=21.6703;IndelType=I;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413414    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:432,30,0
3    14563258    rs4234526    A    G    345.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=57.87;MQ0=0;QD=31.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:378,30,0
3    14565017    rs4685173    G    A    374.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:408,30,0
3    14565357    rs4685174    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    14581594    rs6442461    A    G    52.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=1.537;QD=8.7;ReadPosRankSum=0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273083    GT:AD:DP:GQ:PL    0/1:3,3:6:82.19:82,0,89
3    14583194    rs13062253    T    C    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=GRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507975    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
3    14702982    rs2276754    C    A    851.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285042    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:884,66,0
3    14703297    rs9840626    C    T    387.19    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=51;Dels=0.0;FS=2.827;HRun=1;HaplotypeScore=0.0;MQ=56.28;MQ0=0;MQRankSum=1.355;QD=7.59;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285042    GT:AD:DP:GQ:PL    0/1:35,16:51:99:417,0,973
3    14703401    rs141285975    CATAATTACA    C    936.26    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=3.788;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=215.3177;IndelType=D;MQ=55.04;MQ0=0;MQRankSum=-0.58;QD=37.45;ReadPosRankSum=0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463438    GT:AD:DP:GQ:PL    0/1:11,14:25:99:975,0,927
3    14706770    rs73022117    A    G    145.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;MQRankSum=-0.143;QD=13.22;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463438    GT:AD:DP:GQ:PL    0/1:5,6:11:45.80:175,0,46
3    14707993    rs2033446    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463438    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    14708918    rs2280383    A    G    1373.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465759    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1406,117,0
3    14712473    rs1901    G    A    558.61    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.559;DB;DP=39;Dels=0.0;FS=4.887;HRun=0;HaplotypeScore=0.5784;MQ=59.41;MQ0=0;MQRankSum=0.07;QD=14.32;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=P219;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_14712403_14713051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285042    GT:AD:DP:GQ:PL    0/1:20,19:39:99:589,0,552
3    14724413    rs9821143    G    A    497.73    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=41;Dels=0.0;FS=1.321;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.108;QD=12.14;ReadPosRankSum=-0.569;SNPEFF_AMINO_ACID_CHANGE=D65N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_14724085_14724704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253697    GT:AD:DP:GQ:PL    0/1:21,20:41:99:528,0,689
3    14725668    rs12488352    G    A    1472.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253697    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1506,111,0
3    14745857    rs17040196    G    A    1600.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=A176T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_14745844_14746125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412910    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1633,120,0
3    14755572    rs6765537    A    G    1102.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.41;MQ0=0;QD=28.28;SNPEFF_AMINO_ACID_CHANGE=I285V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_14755514_14755666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412910    GT:AD:DP:GQ:PL    1/1:0,38:39:93.28:1136,93,0
3    14755617    rs6790129    C    G    1024.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.04;SNPEFF_AMINO_ACID_CHANGE=L300V;SNPEFF_CODON_CHANGE=Cta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_14755514_14755666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412910    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1057,81,0
3    14756578    rs12495591    A    C    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253697    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    14756730    rs9869372    A    G    414.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253697    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:447,33,0
3    14768554    rs17255247    G    A    1753.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495387    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1787,132,0
3    14801550    rs2729697    G    A    398.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253697    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:431,33,0
3    14813825    rs294624    G    C    248.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253697    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
3    14862121    rs61751584    G    A    374.14    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.548;DB;DP=33;Dels=0.0;FS=3.436;HRun=0;HaplotypeScore=0.9916;MQ=58.59;MQ0=0;MQRankSum=-0.637;QD=11.34;ReadPosRankSum=-0.71;SNPEFF_AMINO_ACID_CHANGE=A274T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_14860831_14863103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543601    GT:AD:DP:GQ:PL    0/1:19,14:33:99:404,0,627
3    14905513    rs172429    T    G    1490.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.49;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1523,126,0
3    14939198    rs2117775    G    A    521.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:554,42,0
3    14939364    rs2117774    G    A    846.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:880,66,0
3    14939479    rs2164356    G    T    2984.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=L740;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_14939446_14939602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543601    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3018,229,0
3    14939679    rs2307090    G    A    2275.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2309,175,0
3    14942024    rs2307088    T    C    1085.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,36:36:96.26:1118,96,0
3    14942675    rs293906    G    A    529.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:563,42,0
3    14949268    rs9818644    C    T    640.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,19:19:51.13:673,51,0
3    14960043    rs189467090    G    A    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    14960170    rs293916    T    C    417.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:451,33,0
3    14960204    rs2117776    G    T    148.53    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=17;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.464;QD=8.74;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    0/1:10,7:17:99:179,0,318
3    14963337    rs13060887    C    T    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
3    14964383    rs180972868    C    G    98.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.32;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,140
3    14965507    rs4685235    A    G    1511.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9574;MQ=58.37;MQ0=0;QD=25.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285046    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1545,135,0
3    15126086    rs618141    T    C    584.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441057    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:618,45,0
3    15126102    rs58022057    C    G    194.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=12.98;ReadPosRankSum=1.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441057    GT:AD:DP:GQ:PL    0/1:8,7:15:99:225,0,286
3    15175744    rs34045526    C    CGGT    265.07    PASS    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.339;DB;DP=86;FS=0.0;HRun=0;HaplotypeScore=352.5837;IndelType=I;MQ=45.78;MQ0=6;MQRankSum=-2.878;QD=2.79;ReadPosRankSum=-3.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090954.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408497    GT:AD:DP:GQ:PL    0/1:81,12:86:99:304,0,2001
3    15259865    rs826426    G    A    734.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418994    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:767,57,0
3    15282228    rs17480974    T    G    466.56    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.899;QD=12.61;ReadPosRankSum=0.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253693    GT:AD:DP:GQ:PL    0/1:20,17:37:99:497,0,614
3    15301363    rs2291853    G    A    862.74    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.207;DB;DP=59;Dels=0.0;FS=3.074;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.25;QD=14.62;ReadPosRankSum=1.693;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417936    GT:AD:DP:GQ:PL    0/1:31,28:59:99:893,0,1099
3    15311325    rs1287467    A    G    2297.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=59.68;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=R130;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_15311220_15311384;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383791    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2331,190,0
3    15311464    rs1287468    G    T    902.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253688    GT:AD:DP:GQ:PL    1/1:1,29:30:75.21:936,75,0
3    15372129    rs116839273    A    G    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253688    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:75,0,33
3    15471528    rs112921910    AT    A    426    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=41;FS=0.0;HRun=11;HaplotypeScore=112.5208;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=-0.185;QD=10.39;ReadPosRankSum=-1.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396842    GT:AD:DP:GQ:PL    0/1:17,23:41:99:465,0,273
3    15473515    rs2290535    G    A    301.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.091;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.17;MQ0=0;MQRankSum=-1.137;QD=10.76;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396842    GT:AD:DP:GQ:PL    0/1:16,12:28:99:331,0,544
3    15473764    rs1563416    G    A    749.14    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=61;Dels=0.0;FS=6.297;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=12.28;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396842    GT:AD:DP:GQ:PL    0/1:35,26:61:99:779,0,1160
3    15476011    rs1563415    C    G    1541.99    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.31;DB;DP=174;DS;Dels=0.0;FS=3.194;HRun=0;HaplotypeScore=6.8174;MQ=59.89;MQ0=0;MQRankSum=-0.269;QD=8.86;ReadPosRankSum=0.467;SNPEFF_AMINO_ACID_CHANGE=P164;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_15475855_15476045;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396842    GT:AD:DP:GQ:PL    0/1:110,64:174:99:1572,0,3420
3    15520650    rs17484530    G    C    106.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=1.568;QD=10.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383781    GT:AD:DP:GQ:PL    0/1:6,4:10:99:137,0,179
3    15610070    rs905650    C    T    505.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.572;DB;DP=42;Dels=0.0;FS=4.781;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.52;QD=12.04;ReadPosRankSum=-0.93;SNPEFF_AMINO_ACID_CHANGE=L132;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_15609939_15610093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435217    GT:AD:DP:GQ:PL    0/1:24,18:42:99:536,0,729
3    15613279    .    T    TA    242.62    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.243;DP=47;FS=0.0;HRun=13;HaplotypeScore=323.7782;IndelType=I;MQ=52.15;MQ0=0;MQRankSum=-0.02;QD=5.16;ReadPosRankSum=0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321169    GT:AD:DP:GQ:PL    0/1:33,11:47:99:282,0,241
3    15643043    rs2019160    A    G    760.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417015    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:793,60,0
3    15686470    rs140890299    G    A    1214.03    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=5.033;DB;DP=81;Dels=0.0;FS=8.525;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.165;QD=14.99;ReadPosRankSum=0.505;SNPEFF_AMINO_ACID_CHANGE=P349;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_15685823_15687203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383778    GT:AD:DP:GQ:PL    0/1:41,40:81:99:1244,0,1162
3    15718652    rs2470540    T    A    650.43    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.713;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.088;QD=17.58;ReadPosRankSum=-1.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451422    GT:AD:DP:GQ:PL    0/1:16,21:37:99:680,0,551
3    15736385    rs2455814    A    T    1770.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383777    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1803,135,0
3    15737610    rs2470547    T    C    1151.27    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=4.427;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.477;QD=14.39;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383777    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1181,0,1203
3    15737689    rs2470548    G    A    1179.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.064;DB;DP=90;Dels=0.0;FS=1.741;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.521;QD=13.11;ReadPosRankSum=-0.521;SNPEFF_AMINO_ACID_CHANGE=N507;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_15737641_15737752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399451    GT:AD:DP:GQ:PL    0/1:45,45:90:99:1210,0,1380
3    15737698    rs2470549    T    C    1138.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.295;DB;DP=86;Dels=0.0;FS=0.824;HRun=2;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=0.335;QD=13.24;ReadPosRankSum=-0.559;SNPEFF_AMINO_ACID_CHANGE=Q504;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_15737641_15737752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399451    GT:AD:DP:GQ:PL    0/1:43,43:86:99:1168,0,1326
3    15749213    rs2455830    C    T    72.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.42;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492895    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:102,0,69
3    15752830    rs2455833    T    C    982.41    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.884;DB;DP=68;Dels=0.0;FS=3.203;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=14.45;ReadPosRankSum=-1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383777    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1012,0,1074
3    15753641    rs2455834    A    G    707.55    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.176;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9996;MQ=60.0;MQ0=0;MQRankSum=0.962;QD=14.74;ReadPosRankSum=2.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383777    GT:AD:DP:GQ:PL    0/1:22,26:48:99:738,0,740
3    15754849    rs2255248    C    T    121.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-1.041;QD=8.11;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383777    GT:AD:DP:GQ:PL    0/1:10,5:15:99:152,0,360
3    15756215    rs924754    A    T    555.92    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=2.36;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9974;MQ=58.45;MQ0=0;MQRankSum=-0.427;QD=19.17;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383777    GT:AD:DP:GQ:PL    0/1:11,18:29:99:586,0,337
3    15762847    rs2470519    G    A    36.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.1;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460278    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:66,0,73
3    15807725    rs6789076    T    A    1120.86    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DB;DP=78;Dels=0.0;FS=3.634;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=1.315;QD=14.37;ReadPosRankSum=1.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383777    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1151,0,1307
3    15837784    rs1447649    C    T    267.06    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6671;MQ=57.87;MQ0=0;MQRankSum=0.391;QD=12.14;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383777    GT:AD:DP:GQ:PL    0/1:12,10:22:99:297,0,416
3    15915154    rs10514667    C    T    59.65    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=14;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=4.26;ReadPosRankSum=1.061;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC090945.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413639    GT:AD:DP:GQ:PL    0/1:10,4:14:89.64:90,0,363
3    16242101    rs3796301    C    T    359.31    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.658;QD=17.97;ReadPosRankSum=0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339732    GT:AD:DP:GQ:PL    0/1:7,13:20:99:389,0,188
3    16249761    rs12486293    T    C    40.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=10.16;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339732    GT:AD:DP:GQ:PL    0/1:2,2:4:63.63:71,0,64
3    16249998    rs1505609    A    T    2145.69    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=140;Dels=0.0;FS=3.004;HRun=0;HaplotypeScore=6.2722;MQ=59.84;MQ0=0;MQRankSum=0.213;QD=15.33;ReadPosRankSum=1.863;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339732    GT:AD:DP:GQ:PL    0/1:65,75:140:99:2176,0,1893
3    16263872    rs2292167    C    A    247.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489467    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
3    16263920    rs2292168    G    C    496.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489467    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:529,39,0
3    16305674    rs14080    C    G    329.79    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=19;Dels=0.0;FS=7.911;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.161;QD=17.36;ReadPosRankSum=2.06;SNPEFF_AMINO_ACID_CHANGE=V57;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_16305662_16305736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000488423    GT:AD:DP:GQ:PL    0/1:6,13:19:99:360,0,153
3    16312564    rs842259    C    T    801.45    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.608;DB;DP=83;Dels=0.0;FS=0.889;HRun=0;HaplotypeScore=0.8667;MQ=58.94;MQ0=0;MQRankSum=-1.122;QD=9.66;ReadPosRankSum=-0.277;SNPEFF_AMINO_ACID_CHANGE=H35;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_16312452_16312578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXNAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285083    GT:AD:DP:GQ:PL    0/1:51,32:83:99:831,0,1587
3    16327855    rs842274    T    G    726.25    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=0.943;DB;DP=56;Dels=0.0;FS=2.322;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.39;QD=12.97;ReadPosRankSum=-1.463;SNPEFF_AMINO_ACID_CHANGE=S64A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_16327849_16327955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXNAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285083    GT:AD:DP:GQ:PL    0/1:29,27:56:99:756,0,904
3    16343092    rs842283    T    G    302.94    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.576;DB;DP=23;Dels=0.0;FS=10.942;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.116;QD=13.17;ReadPosRankSum=-1.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285083    GT:AD:DP:GQ:PL    0/1:11,12:23:99:333,0,323
3    16343505    rs842282    T    C    116.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.45;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXNAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435829    GT:AD:DP:GQ:PL    0/1:2,4:6:63.18:147,0,63
3    16358584    rs690241    T    C    579.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.463;DB;DP=46;Dels=0.0;FS=2.614;HRun=2;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=-0.057;QD=12.6;ReadPosRankSum=0.556;SNPEFF_AMINO_ACID_CHANGE=S460;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_16357352_16358739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432519    GT:AD:DP:GQ:PL    0/1:23,23:46:99:610,0,737
3    16364919    rs690216    A    C    208.67    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.602;DB;DP=37;Dels=0.0;FS=3.626;HRun=0;HaplotypeScore=3.9981;MQ=58.79;MQ0=0;MQRankSum=0.903;QD=5.64;ReadPosRankSum=1.15;SNPEFF_AMINO_ACID_CHANGE=P396;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_16364883_16364964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432519    GT:AD:DP:GQ:PL    0/1:28,9:37:99:239,0,885
3    16399177    rs560032    G    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334133    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
3    16419708    rs690317    G    A    151.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.9;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334133    GT:AD:DP:GQ:PL    0/1:2,6:8:55.93:181,0,56
3    16450872    rs1546650    T    C    254.52    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.263;DB;DP=30;Dels=0.0;FS=2.493;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.543;QD=8.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431547    GT:AD:DP:GQ:PL    0/1:21,9:30:99:285,0,660
3    16535097    rs10454232    C    T    198.64    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.577;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.427;QD=7.36;ReadPosRankSum=-1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334133    GT:AD:DP:GQ:PL    0/1:17,10:27:99:229,0,615
3    16535229    rs3815962    C    T    2210.34    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=204;Dels=0.0;FS=9.152;HRun=1;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;MQRankSum=1.358;QD=10.83;ReadPosRankSum=1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334133    GT:AD:DP:GQ:PL    0/1:122,82:204:99:2240,0,3337
3    16635866    rs13067997    C    G    105.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454457    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:138,12,0
3    16638775    rs2217204    T    C    224.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250863    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:258,21,0
3    16638810    rs2195155    T    C    291.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250863    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
3    16639754    rs3773827    G    T    2055.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.57;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250863    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2089,157,0
3    16646745    rs9847342    C    G    1714.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.85;MQ0=0;QD=27.21;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_16646710_16647006;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399444    GT:AD:DP:GQ:PL    1/1:3,60:63:99:1747,132,0
3    16679606    rs1025254    T    C    341.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454457    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:375,30,0
3    17056271    rs61755446    G    A    2476.45    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=5.769;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4011;MQ=60.0;MQ0=0;MQRankSum=-1.433;QD=16.4;ReadPosRankSum=0.864;SNPEFF_AMINO_ACID_CHANGE=A836;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_17056200_17056403;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLCL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396755    GT:AD:DP:GQ:PL    0/1:70,81:151:99:2506,0,2000
3    17208267    rs1138454    T    C    609.14    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=36;Dels=0.0;FS=1.341;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=2.372;QD=16.92;ReadPosRankSum=0.43;SNPEFF_AMINO_ACID_CHANGE=I696V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_17208259_17208420;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253692    GT:AD:DP:GQ:PL    0/1:16,20:36:99:639,0,436
3    17447837    .    T    TA    949.96    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.4;DP=61;FS=7.733;HRun=2;HaplotypeScore=155.8376;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=0.905;QD=15.57;ReadPosRankSum=0.281;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434420    GT:AD:DP:GQ:PL    0/1:36,25:61:99:989,0,1013
3    17469903    .    G    GTA    246.97    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DP=15;FS=6.99;HRun=0;HaplotypeScore=100.3104;IndelType=I;MQ=62.74;MQ0=0;MQRankSum=1.791;QD=16.46;ReadPosRankSum=0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253692    GT:AD:DP:GQ:PL    0/1:6,8:15:99:286,0,125
3    18392692    rs7627392    A    C    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SATB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467628    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
3    18457304    rs9310566    G    T    105.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SATB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414509    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:138,12,0
3    19389074    rs6551230    G    A    228.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:261,21,0
3    19432343    rs188775774    A    G    33.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.27;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:64,0,29
3    19436587    rs10470642    T    C    3187.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6956;MQ=59.54;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3221,250,0
3    19479546    rs183646249    C    T    615.96    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.015;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.619;QD=12.57;ReadPosRankSum=-0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    0/1:26,23:49:99:646,0,925
3    19498220    .    G    GT    365.02    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=4.425;DP=32;FS=2.537;HRun=2;HaplotypeScore=163.0948;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=0.285;QD=11.41;ReadPosRankSum=-0.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    0/1:15,17:32:99:404,0,449
3    19498482    rs17005985    C    T    105.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=9.63;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    0/1:6,5:11:99:136,0,180
3    19551752    rs75412914    A    G    115.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=10.5;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    0/1:6,5:11:99:146,0,209
3    19559510    rs148330866    G    C    683.72    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.768;DB;DP=53;Dels=0.0;FS=10.098;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.839;QD=12.9;ReadPosRankSum=-0.852;SNPEFF_AMINO_ACID_CHANGE=V855L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_19559490_19559566;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    0/1:30,23:53:99:714,0,924
3    19559653    rs141450557    T    C    68.43    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=4.28;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328405    GT:AD:DP:GQ:PL    0/1:12,4:16:98.42:98,0,439
3    19924058    rs76398910    G    A    893.75    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=0.518;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.385;QD=10.9;ReadPosRankSum=0.661;SNPEFF_AMINO_ACID_CHANGE=T641I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_19924042_19924223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344838    GT:AD:DP:GQ:PL    0/1:50,32:82:99:924,0,1579
3    19924372    rs58853219    A    AC    302.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=16.0534;IndelType=I;MQ=62.65;MQ0=0;QD=37.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467602    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:344,24,0
3    19925807    rs9882578    A    G    719.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467602    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:752,57,0
3    19930130    rs76305623    A    T    1847.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.6;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=M450K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_19929936_19930143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344838    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1881,138,0
3    19940877    rs2931385    A    G    2554.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.68;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295824    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2587,196,0
3    19941074    rs2931386    A    G    2930.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295824    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2963,217,0
3    19946992    rs2931394    G    A    1928.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295824    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1961,147,0
3    19947296    rs2929377    T    C    2072.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=30.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295824    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2106,174,0
3    19959756    rs2929366    G    A    7935.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=235;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6649;MQ=59.48;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=T119I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_19959724_19959904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440022    GT:AD:DP:GQ:PL    1/1:1,233:235:99:7935,599,0
3    19961330    rs2931403    C    T    76.07    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.787;MQ=59.82;MQ0=0;QD=0.58;SNPEFF_AMINO_ACID_CHANGE=V201I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_19961325_19961468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344838    GT:AD:DP:GQ:PL    1/1:0,131:131:12:109,12,0
3    19961331    rs2929362    T    C    63.23    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.787;MQ=59.82;MQ0=0;QD=0.49;SNPEFF_AMINO_ACID_CHANGE=S200;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_19961325_19961468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344838    GT:AD:DP:GQ:PL    1/1:0,130:130:11.97:96,12,0
3    19962199    rs2931404    G    C    365.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.66;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295824    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
3    19974700    rs2929350    T    C    1814.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.238;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=34.9;ReadPosRankSum=-1.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295824    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1848,103,0
3    19975582    rs2929349    A    G    477.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=28.07;ReadPosRankSum=1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344838    GT:AD:DP:GQ:PL    1/1:1,16:17:10.33:509,10,0
3    19992432    rs6773437    G    T    1753.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_AMINO_ACID_CHANGE=T14;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_19992298_19992553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273047    GT:AD:DP:GQ:PL    1/1:0,46:47:99:1786,132,0
3    20017489    rs4858122    G    C    935.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PP2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333083    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:968,72,0
3    20025665    rs34961993    G    GGA    626.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=24.388;IndelType=I;MQ=60.98;MQ0=0;QD=56.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PP2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389050    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:669,33,0
3    20027232    rs2127957    G    T    1817.15    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.746;DB;DP=148;Dels=0.0;FS=0.617;HRun=0;HaplotypeScore=2.6985;MQ=59.53;MQ0=0;MQRankSum=-1.638;QD=12.28;ReadPosRankSum=0.359;SNPEFF_AMINO_ACID_CHANGE=I511;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_20026872_20027674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PP2D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389050    GT:AD:DP:GQ:PL    0/1:76,72:148:99:1847,0,2483
3    20027837    rs12496392    T    G    131.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273047    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:164,12,0
3    20053581    rs2686326    C    T    2048.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.51;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_20053542_20053759;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PP2D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333083    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2081,166,0
3    20053735    rs2686325    G    A    302.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PP2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461033    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:335,24,0
3    20113779    rs41285055    G    T    1280.69    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=2.859;DB;DP=106;Dels=0.0;FS=8.274;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=-1.52;QD=12.08;ReadPosRankSum=0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263754    GT:AD:DP:GQ:PL    0/1:60,46:106:99:1311,0,1706
3    20114044    rs3828349    T    C    362.31    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.051;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.693;QD=8.23;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263754    GT:AD:DP:GQ:PL    0/1:29,15:44:99:392,0,1022
3    20136645    rs2293141    A    T    64.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.16;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263754    GT:AD:DP:GQ:PL    0/1:6,3:9:94.47:94,0,172
3    20141301    rs11128939    T    G    123.88    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.7;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.7;QD=4.76;ReadPosRankSum=-0.882;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263754    GT:AD:DP:GQ:PL    0/1:20,6:26:99:154,0,626
3    20141356    rs35424474    C    T    338.53    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.915;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.397;QD=7.05;ReadPosRankSum=-0.488;SNPEFF_AMINO_ACID_CHANGE=L193;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_20141354_20141446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263754    GT:AD:DP:GQ:PL    0/1:34,14:48:99:369,0,1167
3    20143020    rs4858155    G    C    295.54    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=59.19;MQ0=0;MQRankSum=-0.217;QD=12.85;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426228    GT:AD:DP:GQ:PL    0/1:13,10:23:99:326,0,422
3    20156302    rs2365794    T    C    293.87    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.799;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=15.47;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263754    GT:AD:DP:GQ:PL    0/1:9,10:19:99:324,0,263
3    20168875    rs41285061    C    G    441.32    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.413;DB;DP=48;Dels=0.0;FS=1.284;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.37;QD=9.19;ReadPosRankSum=-0.611;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469085    GT:AD:DP:GQ:PL    0/1:29,19:48:99:471,0,988
3    20188074    rs2686314    C    T    168.07    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.247;QD=10.5;ReadPosRankSum=1.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468111    GT:AD:DP:GQ:PL    0/1:10,6:16:99:198,0,362
3    20212189    rs1052930    A    G    655.27    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.441;DB;DP=70;Dels=0.0;FS=4.255;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.17;QD=9.36;ReadPosRankSum=-1.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456624    GT:AD:DP:GQ:PL    0/1:43,27:70:99:685,0,1544
3    20212796    rs9828909    G    T    68.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.4;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456624    GT:AD:DP:GQ:PL    0/1:3,3:6:98.41:98,0,109
3    20218306    rs77405492    A    C    111.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263753    GT:AD:DP:GQ:PL    0/1:2,4:6:62.49:142,0,62
3    20219885    rs6550402    C    T    255.62    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.135;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.643;QD=8.81;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263753    GT:AD:DP:GQ:PL    0/1:19,10:29:99:286,0,638
3    21179734    rs6800727    C    T    556.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.802;DB;DP=50;Dels=0.0;FS=14.362;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-1.515;QD=11.13;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC104441.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408732    GT:AD:DP:GQ:PL    0/1:30,20:50:99:587,0,1064
3    21179803    rs62234921    A    T    74.58    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.577;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.789;QD=3.93;ReadPosRankSum=-0.986;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC104441.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408732    GT:AD:DP:GQ:PL    0/1:14,5:19:99:105,0,488
3    21462754    rs451242    A    G    434.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=P380;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_21459915_21462939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281523    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:468,36,0
3    21462787    rs427233    G    A    468.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_AMINO_ACID_CHANGE=S369;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_21459915_21462939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281523    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:502,36,0
3    21462880    rs4455340    A    G    226.98    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=58.2;MQ0=0;MQRankSum=-0.212;QD=17.46;ReadPosRankSum=0.817;SNPEFF_AMINO_ACID_CHANGE=N338;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_21459915_21462939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281523    GT:AD:DP:GQ:PL    0/1:5,8:13:99:257,0,147
3    21478715    rs112819178    G    GA    164.97    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.507;DB;DP=21;FS=2.813;HRun=6;HaplotypeScore=48.8157;IndelType=I;MQ=61.02;MQ0=0;MQRankSum=0.803;QD=7.86;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281523    GT:AD:DP:GQ:PL    0/1:14,7:21:99:204,0,310
3    21606027    rs3841545    AT    A    124.97    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.108;DB;DP=28;FS=0.0;HRun=12;HaplotypeScore=115.6221;IndelType=D;MQ=58.73;MQ0=0;MQRankSum=0.849;QD=4.46;ReadPosRankSum=0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494108    GT:AD:DP:GQ:PL    0/1:16,11:28:99:164,0,347
3    21871299    rs2670251    T    C    130.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494108    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
3    22423131    rs3749375    G    A    42.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=HMGB1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255320    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:73,0,64
3    22423338    rs4472062    G    C    859.76    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=93;Dels=0.0;FS=8.173;HRun=0;HaplotypeScore=1.9932;MQ=34.7;MQ0=8;MQRankSum=0.601;QD=9.24;ReadPosRankSum=-0.529;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=HMGB1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255320    GT:AD:DP:GQ:PL    0/1:54,39:93:99:890,0,1243
3    22423915    .    TGAAGAAGATGAA    T    358    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DP=16;FS=2.632;HRun=0;HaplotypeScore=196.2384;IndelType=D;MQ=36.7;MQ0=1;MQRankSum=-0.779;QD=17.9;ReadPosRankSum=-0.869;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=HMGB1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255320    GT:AD:DP:GQ:PL    0/1:14,6:16:99:397,0,971
3    22423998    rs13070522    C    T    265.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=46.6;MQ0=0;MQRankSum=0.308;QD=10.21;ReadPosRankSum=0.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=HMGB1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255320    GT:AD:DP:GQ:PL    0/1:13,13:26:99:296,0,352
3    23540927    rs7614195    T    C    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396703    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
3    23986629    rs193249552    G    A    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKIRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421515    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
3    23986930    rs4858565    A    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKIRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421515    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    23996371    rs4858095    T    G    242.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=15;Dels=0.0;FS=3.136;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=16.16;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312521    GT:AD:DP:GQ:PL    0/1:6,9:15:99:272,0,194
3    23997547    rs61732086    A    G    983.59    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=3.193;DB;DP=90;Dels=0.0;FS=9.082;HRun=0;HaplotypeScore=2.4836;MQ=59.74;MQ0=0;MQRankSum=0.57;QD=10.93;ReadPosRankSum=1.674;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_23997528_23997616;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1D2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312521    GT:AD:DP:GQ:PL    0/1:55,35:90:99:1014,0,1422
3    24001078    rs4321479    C    T    381.74    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.767;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.11;QD=13.16;ReadPosRankSum=0.855;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312521    GT:AD:DP:GQ:PL    0/1:16,13:29:99:412,0,568
3    24006477    rs4858097    T    A    1998.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.65;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=L386M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_24006468_24006653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312521    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2031,156,0
3    24006725    .    TC    T    121.81    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.562;DP=16;FS=0.0;HRun=1;HaplotypeScore=151.7356;IndelType=D;MQ=46.19;MQ0=0;MQRankSum=-2.025;QD=7.61;ReadPosRankSum=0.984;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468700    GT:AD:DP:GQ:PL    0/1:10,6:16:99:161,0,149
3    24009279    rs67657770    A    C    324.37    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.473;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.603;QD=10.81;ReadPosRankSum=0.947;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312521    GT:AD:DP:GQ:PL    0/1:19,11:30:99:354,0,675
3    24168981    rs13063628    C    T    688.68    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.396;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=14.97;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280696    GT:AD:DP:GQ:PL    0/1:22,24:46:99:719,0,680
3    24185307    rs3772382    C    T    194.44    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=27.78;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413780    GT:AD:DP:GQ:PL    0/1:1,6:7:21.16:224,0,21
3    24232035    rs13096529    C    T    74.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356447    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
3    24270263    rs7642896    G    C    121.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.061;QD=8.07;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356447    GT:AD:DP:GQ:PL    0/1:10,5:15:99:151,0,330
3    24270500    rs35719101    G    GA    452.20    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.99;DB;DP=40;FS=4.499;HRun=6;HaplotypeScore=101.5975;IndelType=I;MQ=58.05;MQ0=0;MQRankSum=-1.831;QD=11.31;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356447    GT:AD:DP:GQ:PL    0/1:23,17:40:99:491,0,504
3    25611472    rs142866283    GACACACACAC    G    970.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=292.0851;IndelType=D;MQ=48.03;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330688    GT:AD:DP:GQ:PL    1/1:18,8:30:39.12:1013,39,0
3    25611626    rs1656455    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330688    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
3    25639973    rs11372851    A    AT    1471.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=8;HaplotypeScore=121.1385;IndelType=I;MQ=60.41;MQ0=0;QD=29.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330688    GT:AD:DP:GQ:PL    1/1:7,43:50:99:1514,132,0
3    25650528    rs2364586    T    C    258.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475717    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
3    25660094    rs76459841    G    GT    1721.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=8;HaplotypeScore=121.3736;IndelType=I;MQ=58.47;MQ0=0;QD=30.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264331    GT:AD:DP:GQ:PL    1/1:5,51:56:99:1764,153,0
3    25661557    rs3832214    T    TA    336.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=24.4451;IndelType=I;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470132    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:378,27,0
3    25664830    rs1561033    C    T    72.02    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.0;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470132    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:102,0,30
3    25666156    rs2293787    C    T    2156.24    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.939;DB;DP=153;Dels=0.0;FS=1.35;HRun=2;HaplotypeScore=1.9815;MQ=59.7;MQ0=0;MQRankSum=0.207;QD=14.09;ReadPosRankSum=-0.128;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491510    GT:AD:DP:GQ:PL    0/1:77,76:153:99:2186,0,2283
3    25671778    rs3736605    C    T    1200.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264331    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1234,90,0
3    25673776    rs3736603    C    T    169.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264331    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
3    25673835    rs3736602    A    C    315.19    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.474;QD=28.65;ReadPosRankSum=-1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264331    GT:AD:DP:GQ:PL    0/1:1,10:11:11.66:345,0,12
3    25674091    rs3736601    C    A    3315.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264331    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3315,289,0
3    25674484    rs11709485    C    T    159.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264331    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
3    25675637    rs1344827    T    C    106.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535930    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
3    25679474    rs10510570    T    A    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535930    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    25679738    rs60422476    T    C    2492.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.48;MQ0=0;QD=33.23;SNPEFF_AMINO_ACID_CHANGE=V148;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_25679656_25679801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424225    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2525,205,0
3    25683930    rs11705878    A    C    258.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=18.44;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264331    GT:AD:DP:GQ:PL    0/1:6,8:14:99:288,0,208
3    25761373    rs5847370    A    AT    153.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=13;HaplotypeScore=24.1199;IndelType=I;MQ=61.34;MQ0=0;QD=19.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NGLY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280700    GT:AD:DP:GQ:PL    1/1:1,7:8:21.02:195,21,0
3    25773597    rs10780014    T    G    238.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NGLY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280700    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:272,21,0
3    25775253    rs1488992    T    C    195.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NGLY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280700    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
3    25775356    rs6550987    A    C    1176.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NGLY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280700    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1209,93,0
3    25777564    .    G    T    61.29    QDFilter2    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.449;DP=38;Dels=0.0;FS=45.171;HRun=2;HaplotypeScore=3.9322;MQ=57.65;MQ0=0;MQRankSum=-1.486;QD=1.61;ReadPosRankSum=-0.743;SNPEFF_AMINO_ACID_CHANGE=D318E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_25777495_25777640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NGLY1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417874    GT:AD:DP:GQ:PL    0/1:22,16:38:91.28:91,0,728
3    25805390    rs2101477    C    T    127.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NGLY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461491    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
3    25805879    rs11129208    T    C    828.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.538;QD=28.56;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NGLY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280700    GT:AD:DP:GQ:PL    1/1:1,28:29:36.48:861,36,0
3    25835860    rs151328335    G    C    674.37    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=59;Dels=0.0;FS=1.014;HRun=0;HaplotypeScore=0.9973;MQ=59.22;MQ0=0;MQRankSum=0.024;QD=11.43;ReadPosRankSum=0.553;SNPEFF_AMINO_ACID_CHANGE=E336Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_25835583_25836025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OXSM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420173    GT:AD:DP:GQ:PL    0/1:36,22:59:99:704,0,1160
3    25836023    rs9831075    C    T    921.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OXSM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428266    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:954,69,0
3    25836088    rs9834955    C    A    273.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OXSM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280701    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:306,24,0
3    25900464    rs4681081    T    C    90.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.14;MQ0=0;QD=18.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103588.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451284    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:123,12,0
3    25904394    rs6550999    T    C    487.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103588.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451284    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:521,39,0
3    27184801    rs10865812    T    A    159.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.936;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=11.41;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295720    GT:AD:DP:GQ:PL    0/1:7,7:14:99:190,0,226
3    27203864    rs62255210    C    T    346.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.77;MQ0=0;MQRankSum=-0.675;QD=16.52;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295720    GT:AD:DP:GQ:PL    0/1:9,12:21:99:377,0,297
3    27204052    rs17854381    G    A    549.50    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.496;DB;DP=47;Dels=0.0;FS=1.176;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.054;QD=11.69;ReadPosRankSum=-1.926;SNPEFF_AMINO_ACID_CHANGE=H282;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_27203952_27204092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295720    GT:AD:DP:GQ:PL    0/1:27,20:47:99:579,0,845
3    27233376    rs11926580    G    T    64.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=10.74;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295720    GT:AD:DP:GQ:PL    0/1:3,3:6:94.45:94,0,105
3    27233498    rs11926556    C    A    575.53    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=35;Dels=0.0;FS=1.884;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=2.156;QD=16.44;ReadPosRankSum=-1.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295720    GT:AD:DP:GQ:PL    0/1:16,19:35:99:606,0,530
3    27243045    rs17680166    G    C    682.75    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.541;DB;DP=62;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.477;QD=11.01;ReadPosRankSum=-2.541;SNPEFF_AMINO_ACID_CHANGE=V146;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_27243001_27243071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357467    GT:AD:DP:GQ:PL    0/1:35,27:62:99:713,0,1140
3    27243119    rs17680194    G    A    557.38    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.459;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-1.7;QD=15.93;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295720    GT:AD:DP:GQ:PL    0/1:17,18:35:99:587,0,605
3    27243871    rs34940413    T    C    272.90    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.552;QD=9.75;ReadPosRankSum=0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295720    GT:AD:DP:GQ:PL    0/1:17,11:28:99:303,0,522
3    27296796    rs1550769    C    G    567.11    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=38;Dels=0.0;FS=3.108;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.973;QD=14.92;ReadPosRankSum=-0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:20,18:38:99:597,0,620
3    27296822    rs1550768    A    T    374.83    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.055;DB;DP=30;Dels=0.0;FS=3.532;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.335;QD=12.49;ReadPosRankSum=-1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:17,13:30:99:405,0,578
3    27297816    rs3213930    G    C    279.42    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.539;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=9.64;ReadPosRankSum=-0.202;SNPEFF_AMINO_ACID_CHANGE=T687;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_27297787_27297862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:18,11:29:99:309,0,603
3    27326097    rs11129280    G    T    671.44    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=5.149;DB;DP=47;Dels=0.0;FS=7.489;HRun=0;HaplotypeScore=1.6809;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=14.29;ReadPosRankSum=-0.394;SNPEFF_AMINO_ACID_CHANGE=T670;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_27326093_27326195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:25,22:47:99:701,0,696
3    27326451    rs10510594    A    G    829.76    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=90;Dels=0.0;FS=2.068;HRun=0;HaplotypeScore=0.8667;MQ=59.79;MQ0=0;MQRankSum=-0.089;QD=9.22;ReadPosRankSum=-1.355;SNPEFF_AMINO_ACID_CHANGE=N597;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_27326331_27326452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:55,34:90:99:860,0,1807
3    27326553    rs34894168    AC    A    287.68    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=39.0145;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=-0.337;QD=16.92;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:8,9:17:99:327,0,333
3    27329417    rs10510593    A    C    113.31    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.66;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:143,0,26
3    27332282    rs62255594    C    T    641.76    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.238;DB;DP=64;Dels=0.0;FS=2.573;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.812;QD=10.03;ReadPosRankSum=0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:39,25:64:99:672,0,1181
3    27332820    rs10510592    A    G    1850.63    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.639;DB;DP=130;Dels=0.0;FS=0.675;HRun=0;HaplotypeScore=3.6289;MQ=59.5;MQ0=0;MQRankSum=0.524;QD=14.24;ReadPosRankSum=-1.359;SNPEFF_AMINO_ACID_CHANGE=L513S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_27332753_27332881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:61,69:130:99:1881,0,2044
3    27337379    rs472146    T    C    35.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:66,0,34
3    27350384    rs77257134    G    T    591.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.307;DB;DP=35;Dels=0.0;FS=6.557;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.397;QD=16.9;ReadPosRankSum=1.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491627    GT:AD:DP:GQ:PL    0/1:14,21:35:99:621,0,439
3    27353716    rs552647    C    A    511.73    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.931;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.977;QD=11.37;ReadPosRankSum=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:26,19:45:99:542,0,859
3    27355541    rs1472145    T    C    61.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.5;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:1,3:4:16.62:92,0,17
3    27363637    rs34100200    T    TA    240.69    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.708;DB;DP=35;FS=0.0;HRun=11;HaplotypeScore=89.6761;IndelType=I;MQ=59.65;MQ0=0;MQRankSum=-0.239;QD=6.88;ReadPosRankSum=1.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435750    GT:AD:DP:GQ:PL    0/1:22,13:35:99:280,0,366
3    27387462    rs56104872    G    GGTAA    2576.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=227.75;IndelType=I;MQ=51.34;MQ0=0;QD=78.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    1/1:0,32:33:99:2619,99,0
3    27394419    rs12494966    T    G    592.36    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=38;Dels=0.0;FS=2.258;HRun=0;HaplotypeScore=0.9993;MQ=59.51;MQ0=0;MQRankSum=-1.623;QD=15.59;ReadPosRankSum=0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341435    GT:AD:DP:GQ:PL    0/1:18,20:38:99:622,0,541
3    27421024    rs11709103    G    A    240.76    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=18.52;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    0/1:5,8:13:99:271,0,164
3    27424718    rs1472256    A    G    1612.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.54;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=D1039;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_27424644_27424741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428386    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1646,123,0
3    27427616    rs17630711    A    G    347.47    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.436;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.769;QD=11.21;ReadPosRankSum=-0.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    0/1:16,15:31:99:377,0,578
3    27433397    rs2307035    A    T    99.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=16.51;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    0/1:2,4:6:64.94:129,0,65
3    27435773    rs7623550    T    G    72.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475120    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:105,9,0
3    27439549    rs2055122    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    27444524    rs1967131    G    C    138.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.905;QD=8.66;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    0/1:9,7:16:99:169,0,310
3    27446285    rs13063291    T    A    669.25    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=3.467;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.333;QD=20.28;ReadPosRankSum=0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    0/1:10,23:33:99:699,0,314
3    27451106    rs9828914    G    C    131.73    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=17;Dels=0.0;FS=3.854;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.049;QD=7.75;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    0/1:10,7:17:99:162,0,369
3    27463229    rs79251239    C    T    920.46    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=3.414;DB;DP=94;Dels=0.0;FS=1.912;HRun=1;HaplotypeScore=0.6651;MQ=59.26;MQ0=0;MQRankSum=-0.86;QD=9.79;ReadPosRankSum=0.836;SNPEFF_AMINO_ACID_CHANGE=E303;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_27463113_27463270;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428386    GT:AD:DP:GQ:PL    0/1:55,39:94:99:950,0,1643
3    27463420    rs6551200    A    C    75.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428005    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
3    27478797    rs3732608    G    A    214.57    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.278;QD=19.51;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    0/1:4,7:11:99:245,0,105
3    27489996    rs9883830    A    G    505.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295736    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:539,42,0
3    28373154    rs13081520    T    G    71.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334100    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:101,0,29
3    28373462    rs139773536    C    CA    219.78    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=54.2836;IndelType=I;MQ=58.83;MQ0=0;MQRankSum=0.755;QD=10.47;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414162    GT:AD:DP:GQ:PL    0/1:12,9:21:99:259,0,154
3    28381887    rs3762797    A    T    165.11    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=9.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334100    GT:AD:DP:GQ:PL    0/1:11,7:18:99:195,0,378
3    28520417    rs1563656    T    A    631.30    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.668;DB;DP=53;Dels=0.0;FS=5.759;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=11.91;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=L202Q;SNPEFF_CODON_CHANGE=cTa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_28520305_28520422;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCWPW2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383768    GT:AD:DP:GQ:PL    0/1:28,25:53:99:661,0,934
3    28533458    rs13099814    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCWPW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383768    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    28552310    rs6777813    A    T    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCWPW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383768    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    29529907    rs2371695    G    A    179.81    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.889;DB;DP=25;Dels=0.0;FS=4.559;HRun=0;HaplotypeScore=10.6439;MQ=58.44;MQ0=0;MQRankSum=1.341;QD=7.19;ReadPosRankSum=-1.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    0/1:14,11:25:99:210,0,485
3    29529913    rs78520827    TTC    T    329.68    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=4.013;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=133.7761;IndelType=D;MQ=58.37;MQ0=0;MQRankSum=1.068;QD=11.77;ReadPosRankSum=-1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    0/1:16,12:28:99:369,0,510
3    29628722    rs56049588    T    C    69.43    HaplotypeScoreFilter13    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=31;Dels=0.03;FS=21.795;HRun=0;HaplotypeScore=25.635;MQ=40.0;MQ0=0;MQRankSum=1.972;QD=2.17;ReadPosRankSum=-2.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    0/1:20,11:31:49.43:99,0,49
3    29804300    rs7340719    C    A    106.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.32;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,122
3    29804487    rs1371839    A    T    361.94    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=27;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=13.41;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    0/1:13,14:27:99:392,0,388
3    29804509    rs1371840    T    C    328.53    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.04;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=13.14;ReadPosRankSum=-1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    0/1:12,13:25:99:359,0,349
3    29922333    rs13324314    C    T    961.88    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.176;DB;DP=77;Dels=0.0;FS=3.087;HRun=0;HaplotypeScore=0.8667;MQ=59.7;MQ0=0;MQRankSum=1.829;QD=12.49;ReadPosRankSum=2.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    0/1:40,37:77:99:992,0,987
3    29925518    rs2218724    A    G    99.64    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=7.66;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    0/1:8,5:13:99:130,0,288
3    29977739    rs1449287    T    C    588.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:622,48,0
3    29985934    rs35921382    G    A    94.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273139    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
3    30032626    rs114278295    C    G    388.55    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.717;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1968;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=9.25;ReadPosRankSum=0.842;SNPEFF_AMINO_ACID_CHANGE=T393;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_30032573_30032700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383766    GT:AD:DP:GQ:PL    0/1:26,16:42:99:419,0,807
3    30656168    rs6791557    G    A    1018.62    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.411;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8666;MQ=59.73;MQ0=0;MQRankSum=-0.56;QD=11.84;ReadPosRankSum=1.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295754    GT:AD:DP:GQ:PL    0/1:45,41:86:99:1049,0,1315
3    30686414    rs1155705    A    G    356.23    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=1.779;DB;DP=47;Dels=0.0;FS=7.715;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=7.58;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295754    GT:AD:DP:GQ:PL    0/1:32,15:47:99:386,0,935
3    30713126    rs11466512    T    A    736.64    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=3.067;DB;DP=44;Dels=0.0;FS=1.333;HRun=1;HaplotypeScore=0.9665;MQ=59.01;MQ0=0;MQRankSum=-0.561;QD=16.74;ReadPosRankSum=2.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295754    GT:AD:DP:GQ:PL    0/1:18,26:44:99:767,0,471
3    30769514    rs9879502    A    T    45.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=11;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=7.54;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498387    GT:AD:DP:GQ:PL    0/1:3,3:6:75.25:75,0,104
3    30769948    rs7617829    C    T    159.99    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=1.139;QD=9.41;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282538    GT:AD:DP:GQ:PL    0/1:11,6:17:99:190,0,328
3    30819435    rs1157800    C    G    35.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282538    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
3    30819765    rs1157799    G    T    797.17    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.495;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.17;MQ0=0;MQRankSum=0.499;QD=12.86;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282538    GT:AD:DP:GQ:PL    0/1:34,28:62:99:827,0,1072
3    30819831    rs35503213    ACT    A    210.18    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=3.566;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=79.0317;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=-0.238;QD=10.51;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282538    GT:AD:DP:GQ:PL    0/1:13,7:20:99:249,0,645
3    30827904    rs6550024    A    G    190.57    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=19;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=10.03;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282538    GT:AD:DP:GQ:PL    0/1:12,7:19:99:221,0,409
3    30875569    rs111416411    G    A    180.59    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.61;QD=10.62;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282538    GT:AD:DP:GQ:PL    0/1:10,7:17:99:211,0,366
3    31617725    rs4574331    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295770    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    31621228    rs58289734    T    TAAA    767.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=32.0056;IndelType=I;MQ=55.8;MQ0=0;QD=63.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295770    GT:AD:DP:GQ:PL    1/1:0,10:12:36.12:810,36,0
3    31642037    rs11713598    A    T    350.33    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.396;QD=20.61;ReadPosRankSum=0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295770    GT:AD:DP:GQ:PL    0/1:4,13:17:99:380,0,120
3    31659398    rs141869599    G    A    733.28    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.472;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.11;MQ0=0;MQRankSum=0.779;QD=14.1;ReadPosRankSum=-0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462235    GT:AD:DP:GQ:PL    0/1:25,27:52:99:763,0,633
3    31663476    rs80348727    C    T    118.42    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=47.03;MQ0=0;MQRankSum=-0.361;QD=13.16;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423527    GT:AD:DP:GQ:PL    0/1:4,5:9:99:148,0,133
3    31663515    rs10662891    A    AGTGTG    1584.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=82.2111;IndelType=I;MQ=48.63;MQ0=0;QD=88.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423527    GT:AD:DP:GQ:PL    1/1:1,16:18:54.18:1626,54,0
3    31666357    rs79094690    C    A    703.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.976;DB;DP=44;Dels=0.0;FS=9.361;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.814;QD=15.99;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423527    GT:AD:DP:GQ:PL    0/1:22,22:44:99:733,0,711
3    31667291    rs4955108    A    G    131.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295770    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
3    31677395    rs11129457    T    G    328.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295770    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:361,27,0
3    31705649    rs2305610    C    T    699.86    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=63;Dels=0.0;FS=3.847;HRun=0;HaplotypeScore=1.5317;MQ=59.27;MQ0=0;MQRankSum=1.879;QD=11.11;ReadPosRankSum=-0.041;SNPEFF_AMINO_ACID_CHANGE=L660;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_31705571_31705724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438237    GT:AD:DP:GQ:PL    0/1:37,25:63:99:730,0,985
3    31712176    rs3749406    G    T    332.78    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.52;QD=13.31;ReadPosRankSum=-0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396556    GT:AD:DP:GQ:PL    0/1:14,11:25:99:363,0,475
3    31712393    rs3749405    C    T    820.98    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.799;DB;DP=40;Dels=0.0;FS=5.395;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.201;QD=20.52;ReadPosRankSum=-0.391;SNPEFF_AMINO_ACID_CHANGE=P539;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_31712289_31712475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438237    GT:AD:DP:GQ:PL    0/1:15,25:40:99:851,0,408
3    31725196    rs17849744    G    A    1061.26    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=77;Dels=0.0;FS=0.883;HRun=0;HaplotypeScore=1.9523;MQ=59.7;MQ0=0;MQRankSum=1.363;QD=13.78;ReadPosRankSum=-0.016;SNPEFF_AMINO_ACID_CHANGE=C488;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_31725126_31725606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438237    GT:AD:DP:GQ:PL    0/1:36,40:77:99:1091,0,880
3    31725672    rs112834856    TA    T    121.05    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.075;DB;DP=21;FS=0.0;HRun=3;HaplotypeScore=80.7793;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=1.362;QD=5.76;ReadPosRankSum=2.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396556    GT:AD:DP:GQ:PL    0/1:15,6:21:99:160,0,580
3    31725691    rs2278960    T    C    173.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.71;QD=12.4;ReadPosRankSum=-1.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396556    GT:AD:DP:GQ:PL    0/1:8,6:14:99:204,0,270
3    31725746    rs12488137    C    A    61.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=6.82;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396556    GT:AD:DP:GQ:PL    0/1:6,3:9:91.36:91,0,207
3    31744112    rs41285085    C    T    145.18    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.74;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396556    GT:AD:DP:GQ:PL    0/1:2,5:7:62.22:175,0,62
3    31789284    rs2290531    T    C    719.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467955    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:752,54,0
3    31789582    rs2290532    T    C    443.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.14;SNPEFF_AMINO_ACID_CHANGE=N190D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_31789402_31789612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438237    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:477,39,0
3    31839097    rs7628972    C    T    293.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396556    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
3    31839135    rs7653447    A    G    433.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396556    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:467,42,0
3    31839242    rs7643025    T    C    1056    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396556    GT:AD:DP:GQ:PL    1/1:0,35:35:87.26:1089,87,0
3    32188006    rs9839702    G    A    213.56    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=16.43;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282541    GT:AD:DP:GQ:PL    0/1:6,7:13:99:244,0,212
3    32200322    rs2305361    T    C    160.11    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=12.32;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282541    GT:AD:DP:GQ:PL    0/1:7,6:13:99:190,0,218
3    32232582    rs58009329    C    T    1085.14    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.173;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=1.736;QD=13.07;ReadPosRankSum=-1.184;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC097639.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443010    GT:AD:DP:GQ:PL    0/1:43,37:83:99:1115,0,1136
3    32232782    rs60078861    G    T    905.49    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.07;MQ0=0;MQRankSum=0.076;QD=10.65;ReadPosRankSum=0.066;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC097639.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443010    GT:AD:DP:GQ:PL    0/1:51,34:85:99:935,0,1278
3    32233185    rs113280784    TA    T    611.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=13;HaplotypeScore=173.2288;IndelType=D;MQ=61.28;MQ0=0;QD=14.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC097639.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443010    GT:AD:DP:GQ:PL    1/1:8,31:42:93.82:654,94,0
3    32301106    rs4245883    C    T    594.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.61;DB;DP=35;Dels=0.0;FS=12.689;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.724;QD=16.99;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307526    GT:AD:DP:GQ:PL    0/1:14,21:35:99:625,0,429
3    32301217    rs4245884    A    C    1356.49    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.777;DB;DP=74;Dels=0.0;FS=0.942;HRun=1;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;MQRankSum=0.675;QD=18.33;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307526    GT:AD:DP:GQ:PL    0/1:28,46:74:99:1386,0,875
3    32301352    rs4627790    T    C    440.97    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.602;DB;DP=41;Dels=0.0;FS=4.62;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-2.194;QD=10.76;ReadPosRankSum=-0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307526    GT:AD:DP:GQ:PL    0/1:22,19:41:99:471,0,745
3    32398761    .    A    G    415.63    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.803;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=1.55;QD=16.63;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307526    GT:AD:DP:GQ:PL    0/1:9,16:25:99:446,0,309
3    32399181    rs2289244    G    A    201.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307526    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
3    32411292    rs17029319    G    A    226.02    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5781;MQ=60.0;MQ0=0;MQRankSum=-1.135;QD=10.27;ReadPosRankSum=-1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307526    GT:AD:DP:GQ:PL    0/1:13,9:22:99:256,0,450
3    32510017    rs441171    G    A    822.14    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=73;Dels=0.0;FS=2.695;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.023;QD=11.26;ReadPosRankSum=-0.842;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM7;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:42,31:73:99:852,0,1396
3    32525732    rs445837    A    T    144.13    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.58;QD=14.41;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495177    GT:AD:DP:GQ:PL    0/1:3,7:10:92.83:174,0,93
3    32571823    rs35467710    G    GA    103.55    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.225;DB;DP=35;FS=2.027;HRun=17;HaplotypeScore=238.6641;IndelType=I;MQ=55.55;MQ0=0;MQRankSum=-0.865;QD=2.96;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1LI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273130    GT:AD:DP:GQ:PL    0/1:23,8:35:24.74:143,0,25
3    32587603    rs342732    T    C    90.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1LI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273130    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    32746522    rs7429569    A    G    468.20    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=3.696;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=15.1;ReadPosRankSum=0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328834    GT:AD:DP:GQ:PL    0/1:16,15:31:99:498,0,549
3    32757861    rs115116954    A    G    413.95    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.609;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.778;QD=15.33;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485136    GT:AD:DP:GQ:PL    0/1:11,16:27:99:444,0,383
3    32758763    rs11129531    G    A    812.70    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.614;DB;DP=46;Dels=0.0;FS=1.584;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.127;QD=17.67;ReadPosRankSum=-0.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485136    GT:AD:DP:GQ:PL    0/1:18,28:46:99:843,0,591
3    32761481    rs13092303    A    G    715.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494439    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:749,57,0
3    32766905    rs6550155    A    G    634.61    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.742;DB;DP=53;Dels=0.0;FS=1.455;HRun=0;HaplotypeScore=2.7059;MQ=59.56;MQ0=0;MQRankSum=-0.884;QD=11.97;ReadPosRankSum=0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328834    GT:AD:DP:GQ:PL    0/1:29,24:53:99:665,0,1028
3    32774754    rs9799359    T    C    51.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=8.59;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328834    GT:AD:DP:GQ:PL    0/1:3,3:6:81.56:82,0,106
3    32774782    rs9798936    A    G    281.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328834    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:314,24,0
3    32801173    rs9832822    A    G    537.28    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.251;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.36;MQ0=0;MQRankSum=0.149;QD=14.92;ReadPosRankSum=-0.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328834    GT:AD:DP:GQ:PL    0/1:17,19:36:99:567,0,587
3    32815231    rs2396631    A    T    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331889    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
3    32915097    rs62251955    T    G    186.57    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.96;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383763    GT:AD:DP:GQ:PL    0/1:4,7:11:99:217,0,134
3    32915214    rs6799979    C    G    3837.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383763    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3838,304,0
3    32927509    rs6774703    G    T    916.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_AMINO_ACID_CHANGE=T368;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_32927426_32927560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM71;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383763    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:950,69,0
3    32933344    rs10630076    G    GTC    734.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.25;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=206.3377;IndelType=I;MQ=56.45;MQ0=0;MQRankSum=-2.053;QD=18.35;ReadPosRankSum=-0.351;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383763    GT:AD:DP:GQ:PL    1/1:25,14:40:25.25:776,25,0
3    33055721    rs4302331    A    G    949.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=C390R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33055548_33055802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307377    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:982,75,0
3    33059732    rs4371463    T    C    34.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473477    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:64,0,24
3    33063050    rs13093698    A    G    329.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=26;Dels=0.0;FS=4.925;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=12.69;ReadPosRankSum=-0.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482097    GT:AD:DP:GQ:PL    0/1:13,13:26:99:360,0,440
3    33087914    rs34173901    G    C    105.39    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.08;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307363    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:135,0,27
3    33093190    rs12632196    T    C    577    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.686;DB;DP=37;Dels=0.0;FS=4.077;HRun=2;HaplotypeScore=0.9983;MQ=58.74;MQ0=0;MQRankSum=-0.076;QD=15.59;ReadPosRankSum=-1.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438227    GT:AD:DP:GQ:PL    0/1:17,20:37:99:607,0,590
3    33093681    rs77890945    G    C    65.25    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307363    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:95,0,30
3    33099880    rs7637435    T    C    144.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464355    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
3    33110190    rs11129543    G    T    518.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436768    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:552,42,0
3    33110656    rs7610916    T    C    106.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307363    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:139,12,0
3    33138544    rs7614776    A    G    751.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33138503_33138722;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307363    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:784,57,0
3    33138549    rs7637099    G    A    685.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_AMINO_ACID_CHANGE=P10L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33138503_33138722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307363    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:719,57,0
3    33156196    rs7611841    T    C    119.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320954    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
3    33171659    rs4392367    A    G    134.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320954    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
3    33174156    rs1135127    T    G    1162.72    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.579;DB;DP=100;Dels=0.0;FS=1.945;HRun=0;HaplotypeScore=1.5253;MQ=60.0;MQ0=0;MQRankSum=0.577;QD=11.63;ReadPosRankSum=-0.471;SNPEFF_AMINO_ACID_CHANGE=T301;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33174047_33174192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449224    GT:AD:DP:GQ:PL    0/1:57,43:100:99:1193,0,1937
3    33174168    rs1135128    G    A    1227.22    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.045;DB;DP=96;Dels=0.0;FS=0.909;HRun=0;HaplotypeScore=3.1324;MQ=60.0;MQ0=0;MQRankSum=0.618;QD=12.78;ReadPosRankSum=-1.24;SNPEFF_AMINO_ACID_CHANGE=S305;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33174047_33174192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449224    GT:AD:DP:GQ:PL    0/1:53,43:96:99:1257,0,1692
3    33175793    rs4234239    C    A    754.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485310    GT:AD:DP:GQ:PL    1/1:0,24:24:57.19:788,57,0
3    33175854    rs58617854    A    G    134.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=13.43;ReadPosRankSum=-1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485310    GT:AD:DP:GQ:PL    0/1:5,5:10:99:164,0,178
3    33194138    rs6773595    T    C    747.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.58;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309558    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:780,60,0
3    33194150    rs6809162    C    T    293.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=21;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.604;QD=13.96;ReadPosRankSum=0.391;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309558    GT:AD:DP:GQ:PL    0/1:9,12:21:99:323,0,305
3    33194990    rs6810039    C    A    1650.53    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.838;DB;DP=147;Dels=0.0;FS=2.139;HRun=0;HaplotypeScore=0.8667;MQ=59.84;MQ0=0;MQRankSum=-0.553;QD=11.23;ReadPosRankSum=0.272;SNPEFF_AMINO_ACID_CHANGE=E378D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33191537_33195525;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309558    GT:AD:DP:GQ:PL    0/1:83,64:147:99:1681,0,2352
3    33195284    rs61743511    G    A    1226.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.539;DB;DP=120;Dels=0.0;FS=0.733;HRun=0;HaplotypeScore=3.2215;MQ=58.47;MQ0=0;MQRankSum=0.844;QD=10.22;ReadPosRankSum=1.031;SNPEFF_AMINO_ACID_CHANGE=P280;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33191537_33195525;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309558    GT:AD:DP:GQ:PL    0/1:70,50:120:99:1256,0,1999
3    33195309    rs61743461    A    G    1334.24    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.775;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7876;MQ=58.75;MQ0=0;MQRankSum=-0.643;QD=10.42;ReadPosRankSum=-0.469;SNPEFF_AMINO_ACID_CHANGE=L272S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33191537_33195525;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309558    GT:AD:DP:GQ:PL    0/1:71,57:128:99:1364,0,2069
3    33216350    rs4257493    G    A    407.29    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=34;Dels=0.0;FS=5.305;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.857;QD=11.98;ReadPosRankSum=1.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309558    GT:AD:DP:GQ:PL    0/1:20,14:34:99:437,0,607
3    33216357    rs57072412    G    A    637.23    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=37;Dels=0.0;FS=5.403;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.705;QD=17.22;ReadPosRankSum=-1.989;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309558    GT:AD:DP:GQ:PL    0/1:14,23:37:99:667,0,456
3    33255592    rs9637517    A    G    1697.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=F40L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33255420_33255597;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309558    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1730,126,0
3    33414468    rs4678933    G    C    115.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.45;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446237    GT:AD:DP:GQ:PL    0/1:4,4:8:99:146,0,130
3    33414923    rs2291898    G    A    835.20    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.349;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.688;QD=16.38;ReadPosRankSum=0.744;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425973    GT:AD:DP:GQ:PL    0/1:25,26:51:99:865,0,857
3    33419422    rs2291897    C    T    37.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425973    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,112
3    33426883    rs17030546    C    G    608.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.852;QD=12.43;ReadPosRankSum=-0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283628    GT:AD:DP:GQ:PL    0/1:28,21:49:99:639,0,969
3    33434831    rs2293250    G    A    930.98    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=3.047;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5741;MQ=59.13;MQ0=0;MQRankSum=0.384;QD=17.57;ReadPosRankSum=0.545;SNPEFF_AMINO_ACID_CHANGE=T466;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33434804_33434946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447368    GT:AD:DP:GQ:PL    0/1:24,29:53:99:961,0,684
3    33437544    rs3817476    T    C    534.15    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.018;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=15.26;ReadPosRankSum=-0.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411650    GT:AD:DP:GQ:PL    0/1:16,19:35:99:564,0,561
3    33441645    rs115546563    A    G    153.18    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.127;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.595;QD=7.66;ReadPosRankSum=-0.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467613    GT:AD:DP:GQ:PL    0/1:11,9:20:99:183,0,335
3    33444286    rs623244    T    G    40.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=8.11;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283628    GT:AD:DP:GQ:PL    0/1:2,3:5:55.93:71,0,56
3    33454073    rs35702863    CA    C    120.95    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=42;FS=0.0;HRun=16;HaplotypeScore=322.7746;IndelType=D;MQ=53.61;MQ0=0;MQRankSum=1.783;QD=2.88;ReadPosRankSum=0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456378    GT:AD:DP:GQ:PL    0/1:21,14:42:99:160,0,276
3    33454342    rs2272152    G    A    1900.12    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.56;DB;DP=115;Dels=0.0;FS=0.799;HRun=1;HaplotypeScore=3.2161;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=16.52;ReadPosRankSum=-1.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496310    GT:AD:DP:GQ:PL    0/1:54,60:115:99:1930,0,1669
3    33458075    rs17639203    T    G    159.95    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496310    GT:AD:DP:GQ:PL    0/1:1,5:6:23.70:190,0,24
3    33458266    rs3736563    T    C    849.73    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.12;DB;DP=52;Dels=0.0;FS=1.108;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.398;QD=16.34;ReadPosRankSum=-0.194;SNPEFF_AMINO_ACID_CHANGE=N109S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33458250_33458326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283628    GT:AD:DP:GQ:PL    0/1:22,30:52:99:880,0,697
3    33481400    rs2272153    G    C    261.82    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=17;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.049;QD=15.4;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456378    GT:AD:DP:GQ:PL    0/1:7,10:17:99:292,0,233
3    33539893    rs13954    A    G    32.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464961    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:63,0,34
3    33540329    rs6782108    T    C    136.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=2.298;QD=8.5;ReadPosRankSum=0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:9,6:16:99:166,0,336
3    33551821    rs2049282    G    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
3    33552004    rs2049281    T    C    959.73    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=56;Dels=0.0;FS=7.93;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.61;QD=17.14;ReadPosRankSum=-1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:25,31:56:99:990,0,795
3    33552351    rs6767854    A    T    144.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=16.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,139
3    33558359    rs1357542    C    A    324.34    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.166;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=12.47;ReadPosRankSum=0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:15,11:26:99:354,0,551
3    33558407    rs1357541    T    C    1093.62    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.717;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.059;QD=16.82;ReadPosRankSum=-1.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:30,35:65:99:1124,0,1026
3    33558808    rs7635999    T    C    96.59    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=10.73;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,138
3    33577113    rs116780251    C    T    388.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.609;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.077;QD=21.57;ReadPosRankSum=1.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:6,12:18:99:418,0,187
3    33577125    rs3772106    C    T    88.50    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.326;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.196;QD=5.9;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:11,4:15:99:118,0,402
3    33592572    rs12487660    T    G    58.13    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.3;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:4,3:7:88.13:88,0,145
3    33592978    rs34937822    A    AT    321.04    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DB;DP=40;FS=0.0;HRun=11;HaplotypeScore=128.3311;IndelType=I;MQ=59.39;MQ0=0;MQRankSum=0.85;QD=8.03;ReadPosRankSum=-0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:25,13:40:99:360,0,262
3    33602123    rs35779416    C    T    321.89    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.592;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.93;QD=24.76;ReadPosRankSum=-0.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:3,10:13:78.52:352,0,79
3    33612364    rs67476972    TA    T    140.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=16;HaplotypeScore=213.5742;IndelType=D;MQ=52.99;MQ0=0;QD=6.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475576    GT:AD:DP:GQ:PL    1/1:9,9:22:34.62:183,35,0
3    33615874    rs9841413    G    A    145.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=14.57;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,181
3    33617790    rs4629282    A    G    1547.68    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.84;DB;DP=121;Dels=0.0;FS=1.775;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.84;QD=12.79;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:67,54:121:99:1578,0,2106
3    33648715    rs9856967    G    A    37.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=6.23;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485378    GT:AD:DP:GQ:PL    0/1:3,3:6:67.36:67,0,106
3    33653622    rs6807542    T    G    566.23    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.558;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.314;QD=16.18;ReadPosRankSum=-1.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    0/1:17,18:35:99:596,0,557
3    33653803    rs6807732    T    C    74.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
3    33725727    rs7628519    G    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLASP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307312    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    33853747    rs9851801    C    T    168.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.573;QD=18.77;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:3,6:9:78.14:199,0,78
3    33853764    rs150795546    GAAGA    G    219.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=50.0237;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=-0.736;QD=36.5;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:1,5:6:61.24:258,0,61
3    33863369    rs72619958    C    T    62.08    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.76;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:5,3:8:92.08:92,0,165
3    33863683    rs3762817    A    T    122.42    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=10.2;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430877    GT:AD:DP:GQ:PL    0/1:7,5:12:99:152,0,252
3    33863705    rs3762816    G    C    75.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=10.77;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430877    GT:AD:DP:GQ:PL    0/1:3,3:7:99:105,0,107
3    33863723    rs3762815    A    G    32.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.0;QD=5.42;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430877    GT:AD:DP:GQ:PL    0/1:4,2:6:62.49:62,0,142
3    33866868    rs12488699    A    G    686.04    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=43;Dels=0.0;FS=1.726;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.076;QD=15.95;ReadPosRankSum=0.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413073    GT:AD:DP:GQ:PL    0/1:17,26:43:99:716,0,507
3    33866929    rs12495243    G    T    290.56    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.449;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.01;MQ0=0;MQRankSum=0.531;QD=15.29;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413073    GT:AD:DP:GQ:PL    0/1:9,10:19:99:321,0,319
3    33867797    rs1544036    A    G    67.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413073    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
3    33877508    rs3792595    T    A    404.99    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.5113;MQ=59.25;MQ0=0;MQRankSum=-0.178;QD=13.06;ReadPosRankSum=0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:15,16:31:99:435,0,453
3    33877626    rs3792594    G    A    1646.15    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.077;DB;DP=129;Dels=0.0;FS=1.409;HRun=0;HaplotypeScore=1.4725;MQ=59.82;MQ0=0;MQRankSum=2.16;QD=12.76;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=A309T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33877536_33877758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:72,57:129:99:1676,0,2188
3    33879498    rs9832035    G    A    83.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.8;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482561    GT:AD:DP:GQ:PL    0/1:1,3:4:22.31:113,0,22
3    33879602    rs140931811    CTA    C    191.63    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.652;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=75.4245;IndelType=D;MQ=52.85;MQ0=0;MQRankSum=1.945;QD=11.98;ReadPosRankSum=1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482561    GT:AD:DP:GQ:PL    0/1:10,6:16:99:231,0,477
3    33887102    rs11928792    A    G    479.67    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.742;DB;DP=35;Dels=0.0;FS=1.624;HRun=2;HaplotypeScore=0.0;MQ=58.23;MQ0=0;MQRankSum=-3.882;QD=13.7;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412887    GT:AD:DP:GQ:PL    0/1:17,18:35:99:510,0,485
3    33887178    rs11928817    A    T    38.09    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.536;QD=3.17;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412887    GT:AD:DP:GQ:PL    0/1:8,4:12:68.08:68,0,297
3    33895391    rs3183982    A    G    134.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.905;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.25;MQ0=0;MQRankSum=-3.163;QD=9.59;ReadPosRankSum=-0.968;SNPEFF_AMINO_ACID_CHANGE=S637;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33895371_33895505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:8,6:14:99:164,0,284
3    33905471    rs11922311    A    G    755.76    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=4.146;DB;DP=44;Dels=0.0;FS=5.22;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.687;QD=17.18;ReadPosRankSum=1.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:19,25:44:99:786,0,534
3    33905566    rs1127732    C    T    710.60    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=2.686;DB;DP=41;Dels=0.0;FS=5.71;HRun=1;HaplotypeScore=0.9997;MQ=58.87;MQ0=0;MQRankSum=-1.029;QD=17.33;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=S730L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33905498_33905621;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:16,25:41:99:741,0,414
3    33907835    rs5847794    T    TCTCC    1921.24    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.707;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=154.3712;IndelType=I;MQ=55.21;MQ0=0;MQRankSum=-1.006;QD=42.69;ReadPosRankSum=-0.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465122    GT:AD:DP:GQ:PL    0/1:23,22:45:99:1960,0,856
3    33907945    rs3183987    A    G    783.23    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.653;DB;DP=67;Dels=0.0;FS=0.95;HRun=0;HaplotypeScore=2.713;MQ=58.96;MQ0=0;MQRankSum=-0.874;QD=11.69;ReadPosRankSum=0.069;SNPEFF_AMINO_ACID_CHANGE=P845;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_33907843_33911194;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307296    GT:AD:DP:GQ:PL    0/1:36,31:67:99:813,0,1140
3    35725250    rs969818    C    T    1346.58    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.028;DB;DP=73;Dels=0.0;FS=2.597;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.427;QD=18.45;ReadPosRankSum=-0.776;SNPEFF_AMINO_ACID_CHANGE=S68;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_35725218_35725307;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000187397    GT:AD:DP:GQ:PL    0/1:25,48:73:99:1377,0,756
3    35730712    rs78806399    G    C    227.57    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=17.51;ReadPosRankSum=1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396481    GT:AD:DP:GQ:PL    0/1:5,8:13:99:258,0,162
3    35731725    rs1513476    C    T    437.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396482    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:471,36,0
3    35756778    rs2305233    A    T    299.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=19.98;ReadPosRankSum=0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187397    GT:AD:DP:GQ:PL    0/1:6,9:15:99:330,0,204
3    35778773    rs2278757    A    G    365.62    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.8;MQ0=0;MQRankSum=-1.373;QD=7.17;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=P467;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_35778670_35778854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337271    GT:AD:DP:GQ:PL    0/1:27,24:51:99:396,0,697
3    35779750    rs2012153    A    G    1994.40    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.565;DB;DP=132;Dels=0.0;FS=2.335;HRun=1;HaplotypeScore=4.4846;MQ=59.65;MQ0=0;MQRankSum=-0.35;QD=15.0;ReadPosRankSum=-0.602;SNPEFF_AMINO_ACID_CHANGE=P509;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_35779706_35779810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337271    GT:AD:DP:GQ:PL    0/1:56,76:132:99:2024,0,1749
3    35780640    rs35499003    T    C    323.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.159;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.07;QD=11.56;ReadPosRankSum=-1.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187397    GT:AD:DP:GQ:PL    0/1:16,12:28:99:354,0,554
3    35780735    rs35497369    T    C    1724.29    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=3.923;DB;DP=112;Dels=0.01;FS=0.914;HRun=0;HaplotypeScore=1.7552;MQ=59.39;MQ0=0;MQRankSum=0.717;QD=15.26;ReadPosRankSum=-0.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187397    GT:AD:DP:GQ:PL    0/1:53,59:112:99:1754,0,1683
3    35785296    rs6550367    T    C    919.77    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=68;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=1.612;MQ=60.0;MQ0=0;MQRankSum=-0.397;QD=13.53;ReadPosRankSum=-2.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187397    GT:AD:DP:GQ:PL    0/1:29,39:68:99:950,0,914
3    36484746    rs9865125    G    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    36527872    rs11926471    A    G    336.33    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.05;MQ0=0;MQRankSum=-1.159;QD=28.03;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273183    GT:AD:DP:GQ:PL    0/1:1,11:12:8.12:366,0,8
3    36869879    .    A    AGAAG    1572.82    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.758;DP=64;FS=4.449;HRun=0;HaplotypeScore=230.2411;IndelType=I;MQ=60.91;MQ0=0;MQRankSum=2.445;QD=24.58;ReadPosRankSum=0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    0/1:42,22:64:99:1612,0,559
3    36872224    rs3732384    T    C    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.59;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,108
3    36876154    rs3796186    C    T    577.95    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.258;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=14.45;ReadPosRankSum=-1.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    0/1:22,18:40:99:608,0,766
3    36880684    rs4431050    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463984    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    36887973    rs4678910    C    G    347.43    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.716;DB;DP=27;Dels=0.0;FS=3.9;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=12.87;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    0/1:16,11:27:99:377,0,573
3    36888064    rs4678911    G    T    109.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.19;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    0/1:2,4:6:66.35:139,0,66
3    36893965    rs17195098    C    T    111.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.92;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    0/1:4,4:8:70.02:141,0,70
3    36896653    rs9818599    G    C    1508.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1542,114,0
3    36898381    rs41511748    G    A    1698.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.608;DB;DP=106;Dels=0.0;FS=3.07;HRun=1;HaplotypeScore=1.9445;MQ=59.39;MQ0=0;MQRankSum=0.01;QD=16.02;ReadPosRankSum=0.146;SNPEFF_AMINO_ACID_CHANGE=I350;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_36896664_36899540;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    0/1:53,53:106:99:1728,0,1587
3    36915814    rs4296548    T    G    615.17    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.33;DB;DP=47;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.737;QD=13.09;ReadPosRankSum=-1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301807    GT:AD:DP:GQ:PL    0/1:23,24:47:99:645,0,757
3    37048633    rs4234259    A    G    1280.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231790    GT:AD:DP:GQ:PL    1/1:0,33:33:96.32:1314,96,0
3    37053568    rs1799977    A    G    1472.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=I121V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_37053502_37053590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435176    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1505,114,0
3    37058509    rs4647277    A    G    389.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.19;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432299    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:422,33,0
3    37062040    rs2286939    T    C    208.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441265    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
3    37070106    rs2286940    C    T    334.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231790    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
3    37083740    rs9876116    A    G    1078.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231790    GT:AD:DP:GQ:PL    1/1:0,37:37:93.26:1112,93,0
3    37090274    rs2241031    C    T    480.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336686    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:514,39,0
3    37096109    rs113420512    T    TAAC    1223.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=85.6353;IndelType=I;MQ=53.01;MQ0=0;QD=53.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231790    GT:AD:DP:GQ:PL    1/1:4,18:23:57.19:1265,57,0
3    37097546    rs2363499    A    G    2067.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=59.63;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336686    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2101,165,0
3    37100166    rs58404365    CAAA    C    552.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.658;DB;DP=36;FS=0.0;HRun=16;HaplotypeScore=217.3195;IndelType=D;MQ=55.11;MQ0=0;MQRankSum=-1.397;QD=15.35;ReadPosRankSum=-0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336686    GT:AD:DP:GQ:PL    1/1:7,26:36:56.65:595,57,0
3    37107470    rs2302503    G    A    1680.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.99;MQ0=0;QD=36.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536378    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1714,129,0
3    37116386    rs2302504    G    T    240.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416425    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:273,21,0
3    37133124    rs2302506    A    G    371.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336686    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:404,30,0
3    37144535    rs2302507    C    A    129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336686    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
3    37150988    rs6806252    C    G    3187.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336686    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3221,238,0
3    37163039    rs336595    G    A    1615    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438374    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1648,126,0
3    37170717    rs3733030    T    C    616.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336686    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:650,57,0
3    37170750    rs3733029    G    C    409.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336686    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:443,33,0
3    37285152    rs2271548    C    T    377.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:410,33,0
3    37308243    rs116634321    G    A    289.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.197;QD=13.17;ReadPosRankSum=-2.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    0/1:11,11:22:99:320,0,363
3    37308262    rs73059487    A    T    1156.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    1/1:0,31:31:90.26:1189,90,0
3    37308532    rs1040073    C    T    519.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:552,45,0
3    37317043    rs3733028    T    C    380.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.32;MQ0=2;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:414,33,0
3    37317133    rs112836584    G    T    516    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=4.437;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.99;MQ0=16;MQRankSum=1.085;QD=9.38;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    0/1:35,20:55:99:546,0,583
3    37364899    rs11721021    T    G    164.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435830    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
3    37366459    rs11718848    C    A    2035.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=Q1028K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_37365079_37369316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361924    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2068,163,0
3    37368755    rs62241896    T    A    2614.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=35.82;SNPEFF_AMINO_ACID_CHANGE=M1664K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_37365079_37369316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437131    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2648,193,0
3    37369724    rs5847958    G    GAC    274.11    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.838;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=107.2066;IndelType=I;MQ=40.84;MQ0=1;MQRankSum=-1.628;QD=14.43;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429018    GT:AD:DP:GQ:PL    0/1:10,6:18:99:313,0,142
3    37369771    rs5847960    ACTCT    A    1616.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=272.9781;IndelType=D;MQ=49.78;MQ0=1;QD=36.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429018    GT:AD:DP:GQ:PL    1/1:9,34:43:99:1659,102,0
3    37376500    rs35471738    C    CT    615.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=8;HaplotypeScore=39.4663;IndelType=I;MQ=62.03;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    1/1:1,20:21:57.17:658,57,0
3    37388577    rs3832257    C    CA    349.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=21.6433;IndelType=I;MQ=61.19;MQ0=0;QD=38.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:392,27,0
3    37407489    rs17266090    A    G    1670.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1703,135,0
3    37407664    rs62241901    G    T    2412.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356847    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2445,190,0
3    37512646    rs79749932    T    C    980.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=55.59;MQ0=0;QD=25.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,38:39:90.22:1013,90,0
3    37512647    rs11709385    G    C    981.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=55.59;MQ0=0;QD=25.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,39:39:93.19:1014,93,0
3    37522828    rs197757    G    A    177.01    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=22.13;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    0/1:2,6:8:50.12:207,0,50
3    37522875    rs73055204    C    T    149.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.163;QD=9.34;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    0/1:10,6:16:99:179,0,332
3    37523079    rs17227748    G    A    1103.65    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=69;Dels=0.0;FS=0.932;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.826;QD=15.99;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=T175;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_37522975_37523098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1134,0,831
3    37535865    rs55862442    T    C    43.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,4:4:8.99:75,9,0
3    37535866    rs539108    G    A    43.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,4:4:8.99:75,9,0
3    37535984    rs2507940    C    G    547.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:580,45,0
3    37536056    rs2507941    C    T    213.54    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.036;QD=10.17;ReadPosRankSum=1.123;SNPEFF_AMINO_ACID_CHANGE=T203;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_37535992_37536059;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    0/1:13,8:21:99:244,0,338
3    37549983    rs17228684    G    A    251.11    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.83;MQ0=0;MQRankSum=0.978;QD=19.32;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    0/1:5,8:13:99:281,0,168
3    37560708    rs3733138    A    G    39.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    0/1:3,2:5:69.72:70,0,108
3    37574951    rs267561    G    A    781.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=G507E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_37574805_37574959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:815,63,0
3    37575039    rs267560    G    A    327.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:360,30,0
3    37583851    rs2844349    A    C    496.48    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.601;DB;DP=34;Dels=0.0;FS=3.353;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.347;QD=14.6;ReadPosRankSum=-0.763;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    0/1:15,19:34:99:526,0,434
3    37627112    rs1155741    T    C    254.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
3    37627149    rs1155742    G    A    211.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=21.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,10:10:18.06:244,18,0
3    37791729    rs1402756    G    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264741    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    38010708    rs7372209    T    C    74.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDSPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273179    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
3    38061540    rs2073399    A    G    131.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473834    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:164,12,0
3    38087024    rs36046028    C    T    292.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.003;DB;DP=28;Dels=0.0;FS=1.974;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.157;QD=10.46;ReadPosRankSum=-1.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308059    GT:AD:DP:GQ:PL    0/1:16,12:28:99:323,0,473
3    38134438    rs11129778    A    G    676.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308059    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:709,54,0
3    38163430    .    A    G    157.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.63;ReadPosRankSum=1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301810    GT:AD:DP:GQ:PL    0/1:3,5:8:96.18:187,0,96
3    38348686    rs753330    T    G    280.40    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.272;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.135;QD=12.75;ReadPosRankSum=0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273173    GT:AD:DP:GQ:PL    0/1:13,9:22:99:310,0,418
3    38348949    rs818823    G    T    196.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.582;DB;DP=25;Dels=0.0;FS=1.603;HRun=0;HaplotypeScore=1.7608;MQ=58.49;MQ0=0;MQRankSum=0.361;QD=7.87;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273173    GT:AD:DP:GQ:PL    0/1:15,10:25:99:227,0,534
3    38349369    rs151623    G    A    98.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=14.02;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466887    GT:AD:DP:GQ:PL    0/1:3,4:7:99:128,0,102
3    38350252    rs818820    C    G    153.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466887    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:186,15,0
3    38350479    rs818819    T    C    3228.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.78;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=H270;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38350445_38350613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273173    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3261,250,0
3    38350519    rs818818    G    A    2907.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=36.35;SNPEFF_AMINO_ACID_CHANGE=V284M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38350445_38350613;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273173    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2941,217,0
3    38350543    rs818817    A    G    2562.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=35.11;SNPEFF_AMINO_ACID_CHANGE=S292G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38350445_38350613;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273173    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2596,205,0
3    38350630    rs704929    C    A    985.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466887    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1019,75,0
3    38354967    .    G    A    438.65    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.758;DP=37;Dels=0.0;FS=6.011;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.137;QD=11.86;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=S385N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38354879_38354976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273173    GT:AD:DP:GQ:PL    0/1:20,17:37:99:469,0,664
3    38355176    rs11268633    T    TGTGTGCGTGTGCGCGC    4453.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=233.0087;IndelType=I;MQ=39.97;MQ0=0;QD=171.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273173    GT:AD:DP:GQ:PL    1/1:11,12:26:75.25:4454,75,0
3    38359970    rs697333    T    G    129.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448498    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
3    38390020    rs2615631    C    A    1351.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=38.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,34:35:99:1385,102,0
3    38401677    rs818851    C    T    166.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427323    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
3    38401839    rs818850    T    C    1241.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=G50;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38401830_38401899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1274,96,0
3    38401918    rs818849    A    G    1198.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427323    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1231,90,0
3    38402007    rs818848    T    A    475.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427323    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:509,39,0
3    38402027    rs861767    G    A    346.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427323    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:379,30,0
3    38406648    rs704942    T    C    809.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,26:26:60.20:843,60,0
3    38406773    rs704943    G    T    1223.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.05;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=L125;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38406690_38406776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1256,93,0
3    38406793    rs2234608    T    G    1027.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=57.87;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,33:33:81.26:1061,81,0
3    38408107    rs847879    T    C    130.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
3    38408248    rs704946    G    A    1287.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,36:36:96.32:1321,96,0
3    38408361    rs843890    G    A    2017.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7972;MQ=60.0;MQ0=0;MQRankSum=1.67;QD=36.03;ReadPosRankSum=-1.361;SNPEFF_AMINO_ACID_CHANGE=T190;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38408299_38408364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:1,55:56:99:2051,147,0
3    38408459    rs2234617    A    G    592.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:625,45,0
3    38408536    rs1093684    G    A    149.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:182,15,0
3    38408560    rs1104096    A    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    38409600    rs704947    T    G    1161.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,33:33:90.28:1195,90,0
3    38411377    rs818832    G    A    457.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:491,36,0
3    38442490    rs2070488    G    A    597.45    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.62;MQ0=0;MQRankSum=1.001;QD=9.96;ReadPosRankSum=-0.538;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207870    GT:AD:DP:GQ:PL    0/1:38,22:60:99:627,0,1258
3    38519424    rs2070489    A    G    877.96    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=2.519;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8582;MQ=59.73;MQ0=0;MQRankSum=-0.394;QD=10.21;ReadPosRankSum=1.42;SNPEFF_AMINO_ACID_CHANGE=E111;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38519352_38519461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352511    GT:AD:DP:GQ:PL    0/1:52,34:86:99:908,0,1716
3    38521156    rs13097628    T    C    552.83    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.844;DB;DP=58;Dels=0.0;FS=4.104;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.213;QD=9.53;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352511    GT:AD:DP:GQ:PL    0/1:37,21:58:99:583,0,1133
3    38521425    rs4407366    C    T    77.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.49;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352511    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:107,0,68
3    38524742    rs1046048    C    T    875.76    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=49;Dels=0.0;FS=2.56;HRun=0;HaplotypeScore=1.7653;MQ=60.0;MQ0=0;MQRankSum=1.251;QD=17.87;ReadPosRankSum=-0.01;SNPEFF_AMINO_ACID_CHANGE=N486;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38524629_38524948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACVR2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352511    GT:AD:DP:GQ:PL    0/1:20,29:49:99:906,0,547
3    38537671    rs9838614    T    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287675    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    38539095    rs72284153    CTT    C    389.95    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.444;DB;DP=39;FS=1.64;HRun=15;HaplotypeScore=237.6995;IndelType=D;MQ=56.98;MQ0=0;MQRankSum=0.871;QD=10.0;ReadPosRankSum=0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287675    GT:AD:DP:GQ:PL    0/1:15,15:39:99:429,0,276
3    38545349    rs6599206    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443942    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    38622467    rs7430407    T    C    334.20    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=43;Dels=0.0;FS=2.774;HRun=1;HaplotypeScore=0.734;MQ=58.92;MQ0=0;MQRankSum=0.089;QD=7.77;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=E1061;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38622422_38622862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333535    GT:AD:DP:GQ:PL    0/1:28,15:43:99:364,0,881
3    38627629    rs7645173    A    G    188.05    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.299;QD=12.54;ReadPosRankSum=1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333535    GT:AD:DP:GQ:PL    0/1:8,7:15:99:218,0,246
3    38627633    .    GC    G    182.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DP=14;FS=0.0;HRun=3;HaplotypeScore=85.2749;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=0.101;QD=13.02;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333535    GT:AD:DP:GQ:PL    0/1:7,7:14:99:221,0,220
3    38649924    rs9873213    T    C    103.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399254    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,103
3    38651586    rs41311529    G    C    344.43    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.256;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.245;QD=14.98;ReadPosRankSum=-0.875;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491944    GT:AD:DP:GQ:PL    0/1:6,17:23:99:374,0,194
3    38655643    rs9856587    C    T    162.92    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.239;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=0.034;QD=7.41;ReadPosRankSum=-0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333535    GT:AD:DP:GQ:PL    0/1:14,8:22:99:193,0,427
3    38656033    rs6797133    A    G    199.33    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=22;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.601;QD=9.06;ReadPosRankSum=-1.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333535    GT:AD:DP:GQ:PL    0/1:13,9:22:99:229,0,480
3    38674712    rs6599230    T    C    1070.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.59;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=A29;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38674602_38674850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327956    GT:AD:DP:GQ:PL    1/1:0,33:33:90.22:1103,90,0
3    38738717    rs6599240    G    A    142.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=20.38;ReadPosRankSum=-0.922;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449082    GT:AD:DP:GQ:PL    0/1:2,5:7:64.22:173,0,64
3    38739574    rs6599241    T    C    2508.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=32.57;SNPEFF_AMINO_ACID_CHANGE=M1713V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38738293_38740053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN10A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449082    GT:AD:DP:GQ:PL    1/1:0,76:77:99:2541,199,0
3    38739845    rs6599242    A    G    3115.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=S1622;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38738293_38740053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN10A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449082    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3149,238,0
3    38749026    rs6599248    T    A    375.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449082    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:408,33,0
3    38812708    rs4420804    C    T    1941.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449082    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1974,150,0
3    38938299    rs5848481    C    CT    587.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.144;DB;DP=46;FS=0.0;HRun=14;HaplotypeScore=301.3346;IndelType=I;MQ=54.17;MQ0=0;MQRankSum=-0.021;QD=12.77;ReadPosRankSum=-1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:14,27:46:10.05:629,10,0
3    38938845    rs4484137    T    C    239.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:272,21,0
3    38945180    rs4289298    G    A    77.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
3    38945560    rs4073113    A    G    997.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.578;DB;DP=30;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=33.27;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=C546;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_38945356_38945594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:1,29:30:42:1031,42,0
3    38946416    rs4553926    T    G    138.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:171,15,0
3    38946872    rs4514993    A    T    1475.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1508,114,0
3    38948771    rs13076816    T    A    351.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.5;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:385,30,0
3    38948801    rs141158768    ATGTGTGTGTGTG    A    1120.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=301.576;IndelType=D;MQ=44.65;MQ0=0;QD=70.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:9,6:16:36.12:1162,36,0
3    38948821    rs138466233    GTGTGTGTGTGTGTA    G    1249.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=448.4359;IndelType=D;MQ=36.4;MQ0=0;QD=59.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:16,5:21:56.04:1292,56,0
3    38948839    .    ATC    A    889.90    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=370.1496;IndelType=D;MQ=33.44;MQ0=0;QD=40.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:6,16:22:63.21:932,63,0
3    38948848    .    TACACACAC    T    1033.03    PASS    AC=2;AF=1.00;AN=2;DP=24;FS=0.0;HRun=0;HaplotypeScore=462.1152;IndelType=D;MQ=34.0;MQ0=0;QD=43.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:12,12:24:42.14:1075,42,0
3    38949363    rs6599267    A    C    860.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,25:25:66.17:893,66,0
3    38951753    rs7429404    T    C    714.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,25:25:57.18:747,57,0
3    38961537    rs6779297    T    C    572.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,22:22:51.15:606,51,0
3    38961659    rs6599269    T    C    92.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
3    38962552    .    A    G    2516.95    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.561;DP=196;Dels=0.0;FS=1.124;HRun=2;HaplotypeScore=2.1356;MQ=59.65;MQ0=0;MQRankSum=-1.581;QD=12.84;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    0/1:107,89:196:99:2547,0,3126
3    38967103    rs4676474    C    T    274.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302328    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
3    39149092    rs6786764    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GORASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441302    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
3    39166484    rs784508    C    T    353.70    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.668;QD=27.21;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301819    GT:AD:DP:GQ:PL    0/1:1,12:13:5.66:383,0,6
3    39166509    rs784507    A    G    707.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301819    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:740,54,0
3    39166743    rs2669852    T    C    531.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301819    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:564,42,0
3    39167905    rs784506    G    A    1146.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301819    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1180,90,0
3    39169693    rs1298712    A    G    434.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301819    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:467,36,0
3    39169712    rs1274969    T    C    602.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301819    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:636,48,0
3    39170090    rs1274968    C    T    2004.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=37.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301819    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2037,153,0
3    39172152    rs187569303    A    G    407.35    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.371;DB;DP=38;Dels=0.0;FS=5.225;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.213;QD=10.72;ReadPosRankSum=0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466875    GT:AD:DP:GQ:PL    0/1:20,18:38:99:437,0,620
3    39174437    rs35628459    T    A    222.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=27.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466875    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:255,24,0
3    39174438    rs11381961    G    GA    389.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=87.5751;IndelType=I;MQ=54.65;MQ0=0;QD=43.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466875    GT:AD:DP:GQ:PL    1/1:1,8:9:27.09:432,27,0
3    39174462    rs784491    T    C    439.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=29.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466875    GT:AD:DP:GQ:PL    1/1:0,14:15:36.12:472,36,0
3    39175576    rs784492    G    T    1108.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=39.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466875    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1142,84,0
3    39178238    rs784494    A    C    370.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473587    GT:AD:DP:GQ:PL    1/1:0,11:11:33.05:404,33,0
3    39178899    rs784495    C    T    340.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273153    GT:AD:DP:GQ:PL    1/1:0,14:14:33.07:373,33,0
3    39179909    rs784497    G    A    486.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=30.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273153    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:519,39,0
3    39180099    rs784498    T    C    1962.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=32.18;SNPEFF_AMINO_ACID_CHANGE=I1242;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39180047_39180114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440121    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1996,156,0
3    39180162    rs811969    A    C    1831.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=29.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273153    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1864,153,0
3    39180263    rs704959    G    A    1352.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=R1268K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39180202_39180370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC21A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440121    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1386,108,0
3    39184353    rs704960    C    T    155.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318290    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:188,15,0
3    39184959    rs1274958    C    T    670.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=V111I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39184546_39185088;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318290    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:704,51,0
3    39185077    rs1274957    G    A    608.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_AMINO_ACID_CHANGE=S413;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39183346_39185535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273153    GT:AD:DP:GQ:PL    1/1:0,20:21:48.15:641,48,0
3    39185248    rs784519    A    G    859.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_AMINO_ACID_CHANGE=S356;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39183346_39185535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273153    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:892,66,0
3    39185968    rs810743    A    G    516.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.43;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273153    GT:AD:DP:GQ:PL    1/1:1,19:20:42.13:549,42,0
3    39186038    rs784518    C    G    64.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9315;MQ=38.13;MQ0=0;QD=7.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273153    GT:AD:DP:GQ:PL    1/1:0,9:9:9.02:96,9,0
3    39186728    rs784517    C    T    322.80    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.465;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=-1.256;QD=10.09;ReadPosRankSum=0.67;SNPEFF_AMINO_ACID_CHANGE=R75;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39186488_39186747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273153    GT:AD:DP:GQ:PL    0/1:17,15:32:99:353,0,527
3    39226114    rs34810344    G    A    1758.65    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.543;DB;DP=124;Dels=0.0;FS=2.387;HRun=0;HaplotypeScore=1.5983;MQ=59.66;MQ0=0;MQRankSum=-1.908;QD=14.18;ReadPosRankSum=1.873;SNPEFF_AMINO_ACID_CHANGE=A1608V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39224706_39231016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XIRP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340369    GT:AD:DP:GQ:PL    0/1:64,60:124:99:1789,0,1886
3    39229900    rs6805248    T    C    3374.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7332;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_AMINO_ACID_CHANGE=Q346R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39224706_39231016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XIRP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340369    GT:AD:DP:GQ:PL    1/1:0,109:110:99:3374,271,0
3    39230997    rs2271487    A    G    352.04    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.111;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.723;QD=13.04;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XIRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421646    GT:AD:DP:GQ:PL    0/1:13,14:27:99:382,0,394
3    39306784    rs1050592    A    G    277.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.315;QD=13.2;ReadPosRankSum=-0.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CX3CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412814    GT:AD:DP:GQ:PL    0/1:12,9:21:99:307,0,433
3    39306894    .    C    T    1753.77    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.116;DP=95;Dels=0.0;FS=6.891;HRun=1;HaplotypeScore=2.7541;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=18.46;ReadPosRankSum=-1.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CX3CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412814    GT:AD:DP:GQ:PL    0/1:39,56:95:99:1784,0,1187
3    39307256    rs3732379    C    T    1277.40    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=3.444;DB;DP=88;Dels=0.0;FS=4.679;HRun=0;HaplotypeScore=5.9867;MQ=59.21;MQ0=0;MQRankSum=0.347;QD=14.52;ReadPosRankSum=-1.284;SNPEFF_AMINO_ACID_CHANGE=V249I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39304985_39308009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CX3CR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399220    GT:AD:DP:GQ:PL    0/1:39,49:88:99:1307,0,1138
3    39322843    rs2853708    G    C    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CX3CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358309    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
3    39323163    rs11715522    A    C    684    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=3.607;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.751;QD=15.55;ReadPosRankSum=-0.135;SNPEFF_AMINO_ACID_CHANGE=F8L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39323100_39323226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CX3CR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358309    GT:AD:DP:GQ:PL    0/1:19,25:44:99:714,0,533
3    39373902    rs2853699    C    G    932.84    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.317;DB;DP=71;Dels=0.0;FS=0.912;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.676;QD=13.14;ReadPosRankSum=-0.537;SNPEFF_AMINO_ACID_CHANGE=R2G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39373809_39373922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545843    GT:AD:DP:GQ:PL    0/1:39,32:71:99:963,0,1152
3    39431081    rs2270770    G    A    1774.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1445;MQ=59.57;MQ0=0;QD=32.85;SNPEFF_AMINO_ACID_CHANGE=L51;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_39430986_39431107;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431510    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1807,138,0
3    39433147    rs1995236    G    A    1387.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=37.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431510    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1421,105,0
3    39437800    rs9877539    A    G    3471.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.4495;MQ=59.58;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431510    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3471,268,0
3    39449810    rs3772139    A    C    1165.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475346    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1198,87,0
3    39452123    rs2077797    G    A    887.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.31;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475346    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:921,69,0
3    39452129    rs2077799    G    T    1024.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.75;MQ0=0;QD=37.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475346    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1058,78,0
3    39453057    rs2269349    C    T    1101.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.64;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444512    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1134,87,0
3    39453610    rs2723    C    T    1593.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.24;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444512    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1626,126,0
3    39554786    rs2233204    C    T    361.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.815;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.402;QD=9.28;ReadPosRankSum=-2.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311042    GT:AD:DP:GQ:PL    0/1:26,13:39:99:392,0,967
3    40085814    .    A    C    42.71    QDFilter2    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6714;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=1.94;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302541    GT:AD:DP:GQ:PL    0/1:5,16:22:42.79:73,0,43
3    40204178    rs1714414    T    C    1262.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=31.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302541    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1296,99,0
3    40231883    rs1317317    C    T    1449.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=35.34;SNPEFF_AMINO_ACID_CHANGE=L345;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_40231317_40231954;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYRIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539167    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1482,111,0
3    40251282    rs2679798    G    A    2023.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9992;MQ=59.63;MQ0=0;MQRankSum=-0.782;QD=32.64;ReadPosRankSum=0.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302541    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2057,166,0
3    40251392    rs1799418    T    C    3332.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.6208;MQ=59.59;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=D384;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_40251345_40251584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYRIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539167    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3333,262,0
3    40251628    rs1799419    G    A    546.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302541    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:580,42,0
3    40352640    rs1454490    A    G    290.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232905    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:323,24,0
3    40353259    rs1470937    T    G    162.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462088    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:195,15,0
3    40429338    rs12493020    T    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301825    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    40468886    rs143157203    T    A    1054.97    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.37;DB;DP=60;Dels=0.0;FS=3.707;HRun=0;HaplotypeScore=2.6247;MQ=59.62;MQ0=0;MQRankSum=0.21;QD=17.58;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=F493I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_40468763_40470110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301825    GT:AD:DP:GQ:PL    0/1:23,37:60:99:1085,0,726
3    40498845    rs2276868    C    T    256.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.69;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_40498783_40498854;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338970    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:290,21,0
3    40498933    rs4973904    A    G    171.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338970    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
3    40499182    rs2276870    C    T    32.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=10.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338970    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:64,6,0
3    40499273    rs2276871    A    G    415.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=27.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338970    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:448,39,0
3    40503520    rs147295890    A    ACTGCTGCTGCTGCTG    5411.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=521.0005;IndelType=I;MQ=33.09;MQ0=2;QD=91.71;SNPEFF_AMINO_ACID_CHANGE=T149TAAAAA;SNPEFF_CODON_CHANGE=act/aCTGCTGCTGCTGCTGct;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_3_40503430_40503861;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338970    GT:AD:DP:GQ:PL    1/1:45,12:53:81.28:5411,81,0
3    40503809    rs11539046    G    A    410.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.58;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416518    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:444,33,0
3    40519429    rs4553952    T    C    729.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF619;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462961    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:762,63,0
3    40557271    rs71094610    TTG    T    236.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=79.6895;IndelType=D;MQ=59.36;MQ0=0;QD=12.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF620;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433723    GT:AD:DP:GQ:PL    1/1:7,11:19:26.91:279,27,0
3    40803102    rs681529    G    C    948.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=30.6;MQ0=8;QD=23.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-761N21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457554    GT:AD:DP:GQ:PL    1/1:0,40:40:87.23:982,87,0
3    41274764    rs2691680    C    A    433.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349496    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:466,36,0
3    41279440    rs4135385    A    G    387.08    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.267;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8606;MQ=59.39;MQ0=0;MQRankSum=-1.02;QD=10.19;ReadPosRankSum=-1.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465552    GT:AD:DP:GQ:PL    0/1:22,16:38:99:417,0,782
3    41607701    rs1565957    C    G    581.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:615,45,0
3    41756965    rs61744388    C    T    806.32    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=73;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=1.6281;MQ=59.68;MQ0=0;MQRankSum=1.934;QD=11.05;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=V851I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41756939_41757060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:40,33:73:99:836,0,1164
3    41756986    rs61744385    A    T    929.61    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=65;Dels=0.0;FS=0.981;HRun=0;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;MQRankSum=0.847;QD=14.3;ReadPosRankSum=-1.294;SNPEFF_AMINO_ACID_CHANGE=L844M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41756939_41757060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:31,34:65:99:960,0,922
3    41759191    rs17060938    T    C    703.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.819;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.054;QD=15.64;ReadPosRankSum=-0.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:18,27:45:99:734,0,595
3    41759525    rs9852303    C    T    108.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.48;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,104
3    41795841    rs9867627    A    C    2320.98    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.219;DB;DP=166;Dels=0.0;FS=0.575;HRun=0;HaplotypeScore=1.9523;MQ=59.69;MQ0=0;MQRankSum=-2.485;QD=13.98;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:79,86:166:99:2351,0,2377
3    41831203    rs17215589    C    T    701.03    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=54;Dels=0.0;FS=1.121;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.028;QD=12.98;ReadPosRankSum=-0.557;SNPEFF_AMINO_ACID_CHANGE=A715T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41831153_41831335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:28,26:54:99:731,0,821
3    41841716    rs4973986    A    C    3352.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=57.55;MQ0=0;QD=35.66;SNPEFF_AMINO_ACID_CHANGE=S640A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41841624_41841785;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3352,250,0
3    41841811    .    T    TATTA    1812.59    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.003;DP=66;FS=4.454;HRun=0;HaplotypeScore=273.1004;IndelType=I;MQ=56.48;MQ0=0;MQRankSum=-2.546;QD=27.46;ReadPosRankSum=0.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:42,24:66:99:1852,0,1828
3    41841873    rs17215883    C    T    360.13    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.261;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.25;MQ0=0;MQRankSum=0.02;QD=11.62;ReadPosRankSum=0.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:18,13:31:99:390,0,649
3    41861013    rs141111291    GA    G    536.26    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=3.727;DB;DP=58;FS=2.725;HRun=9;HaplotypeScore=171.0771;IndelType=D;MQ=60.33;MQ0=0;MQRankSum=0.481;QD=9.25;ReadPosRankSum=-0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:30,28:58:99:575,0,675
3    41877414    rs3774372    T    C    1608.11    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.875;DB;DP=125;Dels=0.0;FS=11.289;HRun=0;HaplotypeScore=1.7608;MQ=56.82;MQ0=0;MQRankSum=0.041;QD=12.86;ReadPosRankSum=1.229;SNPEFF_AMINO_ACID_CHANGE=K569R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41877356_41877463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:61,64:125:99:1638,0,1961
3    41923513    rs59960840    GA    G    132.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=74.8688;IndelType=D;MQ=29.0;MQ0=0;QD=22.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420927    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:174,15,0
3    41923515    rs61575884    GGCCA    G    238.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=73.1998;IndelType=D;MQ=29.0;MQ0=0;QD=39.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420927    GT:AD:DP:GQ:PL    1/1:0,6:6:14.93:280,15,0
3    41923872    rs1716994    T    C    305.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:339,27,0
3    41925260    rs113374533    CAGAGAAAAAACAAGTGA    C    1348.68    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=291.5748;IndelType=D;MQ=47.07;MQ0=0;MQRankSum=-2.781;QD=79.33;ReadPosRankSum=1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:7,10:17:99:1388,0,1708
3    41925301    rs1716685    T    C    411.47    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.69;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=51.99;MQ0=0;MQRankSum=-2.803;QD=10.29;ReadPosRankSum=-1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:22,18:40:99:441,0,678
3    41925398    rs1052501    C    T    1287.01    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.858;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7998;MQ=57.3;MQ0=0;MQRankSum=-0.917;QD=14.79;ReadPosRankSum=0.977;SNPEFF_AMINO_ACID_CHANGE=A542T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41925366_41925444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:39,48:87:99:1317,0,1166
3    41925423    rs1716687    T    C    2953.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.58;MQ0=0;QD=35.59;SNPEFF_AMINO_ACID_CHANGE=V533;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41925366_41925444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    1/1:0,82:83:99:2987,235,0
3    41937000    rs1717003    C    T    71.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=8.95;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,114
3    41938500    rs1717005    G    C    2531.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1232;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2564,190,0
3    41939781    rs73069209    G    A    246.97    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=15.44;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:7,9:16:99:277,0,203
3    41939993    rs1625226    T    A    2335.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DB;DP=100;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=4.5517;MQ=59.54;MQ0=0;MQRankSum=0.99;QD=23.36;ReadPosRankSum=-1.661;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    1/1:2,98:100:99:2369,211,0
3    41942199    rs1717007    T    C    1445.11    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.102;DB;DP=113;Dels=0.0;FS=1.852;HRun=0;HaplotypeScore=0.734;MQ=59.18;MQ0=0;MQRankSum=-0.775;QD=12.79;ReadPosRankSum=-2.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:61,52:113:99:1475,0,1850
3    41942498    rs4615050    T    A    66.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5518;MQ=43.31;MQ0=0;MQRankSum=1.92;QD=8.31;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:5,3:8:96.48:96,0,138
3    41949301    rs59146151    T    C    221.17    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=26;Dels=0.0;FS=4.949;HRun=1;HaplotypeScore=0.9894;MQ=58.2;MQ0=0;MQRankSum=0.961;QD=8.51;ReadPosRankSum=-1.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481226    GT:AD:DP:GQ:PL    0/1:17,9:26:99:251,0,619
3    41949569    rs60659106    G    C    44.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=11.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484323    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:74,0,33
3    41952781    rs1716991    C    T    1477.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484323    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1510,111,0
3    41952852    rs35263917    T    C    960.74    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.772;DB;DP=61;Dels=0.0;FS=2.236;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.652;QD=15.75;ReadPosRankSum=-0.1;SNPEFF_AMINO_ACID_CHANGE=S348G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41952809_41952878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:26,35:61:99:991,0,737
3    41953332    rs1716681    C    T    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
3    41957466    rs1716698    T    G    522.77    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.132;DB;DP=53;Dels=0.0;FS=12.173;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=0.551;QD=9.86;ReadPosRankSum=0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459802    GT:AD:DP:GQ:PL    0/1:31,22:53:99:553,0,1035
3    41960006    rs1716975    T    C    1093.81    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=54.79;MQ0=0;MQRankSum=0.771;QD=13.18;ReadPosRankSum=0.613;SNPEFF_AMINO_ACID_CHANGE=I224V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41959949_41960032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1124,0,1187
3    41961168    rs1716979    T    C    1937.49    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=5.847;DB;DP=146;Dels=0.0;FS=3.374;HRun=0;HaplotypeScore=6.5286;MQ=60.0;MQ0=0;MQRankSum=2.732;QD=13.27;ReadPosRankSum=1.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459802    GT:AD:DP:GQ:PL    0/1:78,68:146:99:1967,0,2569
3    41973062    rs1716992    T    C    63.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=21.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431379    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:95,9,0
3    41977214    rs3934103    C    T    210.91    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;MQRankSum=0.66;QD=16.22;ReadPosRankSum=-1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414606    GT:AD:DP:GQ:PL    0/1:6,7:13:99:241,0,206
3    41977464    rs73071203    A    C    480.17    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.547;DB;DP=43;Dels=0.0;FS=9.551;HRun=1;HaplotypeScore=1.6643;MQ=60.5;MQ0=0;MQRankSum=-2.831;QD=11.17;ReadPosRankSum=-2.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414606    GT:AD:DP:GQ:PL    0/1:21,22:43:99:510,0,649
3    41977488    rs141971314    CCT    C    608.23    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.9;DB;DP=33;FS=5.871;HRun=0;HaplotypeScore=157.1636;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=-1.207;QD=18.43;ReadPosRankSum=0.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414606    GT:AD:DP:GQ:PL    0/1:17,16:33:99:647,0,890
3    41978738    rs73071208    A    T    111.72    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=0.922;QD=15.96;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460978    GT:AD:DP:GQ:PL    0/1:2,5:7:64.82:142,0,65
3    41996136    rs2272007    T    C    808.61    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=75;Dels=0.0;FS=3.158;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=1.462;QD=10.78;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=K39R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_41996114_41996299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:43,32:75:99:839,0,1323
3    41996275    rs7651623    A    G    1049.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459802    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1082,81,0
3    41996304    rs17284472    G    A    378.97    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.87;DB;DP=23;Dels=0.0;FS=2.643;HRun=2;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.735;QD=16.48;ReadPosRankSum=-1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ULK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301831    GT:AD:DP:GQ:PL    0/1:9,14:23:99:409,0,317
3    42133149    rs4974011    C    G    34.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=4.93;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327628    GT:AD:DP:GQ:PL    0/1:4,3:7:64.51:65,0,132
3    42201609    rs9757367    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327628    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    42202061    rs4974003    G    T    407.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.05;FS=0.0;HRun=9;HaplotypeScore=1.9632;MQ=52.17;MQ0=0;QD=18.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327628    GT:AD:DP:GQ:PL    1/1:0,21:21:39.11:441,39,0
3    42218095    rs1010987    G    C    259.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327628    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
3    42225951    rs4682953    G    T    166.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327628    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
3    42226151    rs4234445    T    C    2561.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327628    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2594,199,0
3    42226438    rs1375536    C    G    166.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418790    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
3    42229296    rs1463194    G    A    163.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418790    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
3    42230395    rs3816396    C    T    50.87    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.684;QD=6.36;ReadPosRankSum=-0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418790    GT:AD:DP:GQ:PL    0/1:5,3:8:80.86:81,0,171
3    42234758    rs3816397    C    A    902.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327628    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:936,69,0
3    42236415    rs9851455    A    G    616.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.11;MQ0=0;QD=29.36;SNPEFF_AMINO_ACID_CHANGE=S291;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42236296_42236433;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449246    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:650,48,0
3    42244321    rs9311309    G    A    717.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_AMINO_ACID_CHANGE=A533;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42243928_42245681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449246    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:751,57,0
3    42251263    rs2290134    C    T    1610.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.6;SNPEFF_AMINO_ACID_CHANGE=S525;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42251259_42254115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341421    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1643,120,0
3    42251329    rs2290133    C    T    2370.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=P547;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42251259_42254115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341421    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2403,181,0
3    42251577    rs10634555    C    CGGAGGA    2657.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.0;HRun=0;HaplotypeScore=447.5824;IndelType=I;MQ=45.7;MQ0=0;QD=38.52;SNPEFF_AMINO_ACID_CHANGE=T630TEE;SNPEFF_CODON_CHANGE=acg/acGGAGGAg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_3_42251259_42254115;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341421    GT:AD:DP:GQ:PL    1/1:38,22:69:99:2700,99,0
3    42251868    rs71827158    CT    C    954.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=3;HaplotypeScore=288.2283;IndelType=D;MQ=53.89;MQ0=0;QD=25.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327628    GT:AD:DP:GQ:PL    1/1:9,29:38:81.25:997,81,0
3    42305131    rs754635    C    G    239.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334681    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:272,21,0
3    42438754    rs13054    T    C    37.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470991    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
3    42445679    rs40416    C    A    103.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.307;QD=10.35;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287748    GT:AD:DP:GQ:PL    0/1:6,4:10:99:134,0,145
3    42448296    rs33518    T    C    752.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287748    GT:AD:DP:GQ:PL    1/1:0,23:23:60.16:785,60,0
3    42448471    rs2286720    G    A    425.25    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=26;Dels=0.0;FS=1.462;HRun=2;HaplotypeScore=0.7887;MQ=59.11;MQ0=0;MQRankSum=-1.609;QD=16.36;ReadPosRankSum=-0.208;SNPEFF_AMINO_ACID_CHANGE=F53;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42448338_42448490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287748    GT:AD:DP:GQ:PL    0/1:11,15:26:99:455,0,349
3    42469249    rs59799025    GCACA    G    175.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=171.8307;IndelType=D;MQ=54.13;MQ0=0;QD=7.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092047.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401194    GT:AD:DP:GQ:PL    1/1:16,5:23:19.29:217,19,0
3    42660330    rs77328578    G    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232978    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    42660489    rs71709233    CT    C    85.71    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=37;FS=1.72;HRun=18;HaplotypeScore=329.0104;IndelType=D;MQ=54.4;MQ0=0;MQRankSum=0.116;QD=2.32;ReadPosRankSum=1.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232978    GT:AD:DP:GQ:PL    0/1:19,12:37:99:125,0,159
3    42676549    rs67298003    TAAAAAAA    T    221.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;FS=0.0;HRun=21;HaplotypeScore=56.3473;IndelType=D;MQ=54.54;MQ0=0;MQRankSum=0.742;QD=31.63;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464315    GT:AD:DP:GQ:PL    0/1:1,6:7:42.16:260,0,42
3    42728144    rs6805421    A    G    772.20    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.603;DB;DP=45;Dels=0.0;FS=2.843;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.921;QD=17.16;ReadPosRankSum=1.285;SNPEFF_AMINO_ACID_CHANGE=N345S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42727011_42728262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287777    GT:AD:DP:GQ:PL    0/1:21,24:45:99:802,0,604
3    42733468    rs123509    T    C    472.43    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.846;DB;DP=30;Dels=0.0;FS=1.462;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.293;QD=15.75;ReadPosRankSum=0.419;SNPEFF_AMINO_ACID_CHANGE=C362R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42733374_42733612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452129    GT:AD:DP:GQ:PL    0/1:13,17:30:99:502,0,407
3    42735150    rs11079    T    C    264.07    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.941;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=9.11;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=M403V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42735109_42735310;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HHATL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310417    GT:AD:DP:GQ:PL    0/1:19,10:29:99:294,0,557
3    42735274    rs339697    A    G    428.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=2.489;QD=14.27;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=A361;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42735109_42735310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HHATL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310417    GT:AD:DP:GQ:PL    0/1:15,15:30:99:458,0,453
3    42738297    rs2290973    G    A    392.82    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=20;Dels=0.0;FS=1.862;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=19.64;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496027    GT:AD:DP:GQ:PL    0/1:7,13:20:99:423,0,201
3    42740860    rs60176972    C    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HHATL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310417    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    42750324    rs2240861    G    A    189.61    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.049;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=11.15;ReadPosRankSum=0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466031    GT:AD:DP:GQ:PL    0/1:10,7:17:99:220,0,345
3    42751041    .    AC    A    119.90    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DP=9;FS=0.0;HRun=3;HaplotypeScore=28.1873;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=-1.307;QD=13.32;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466031    GT:AD:DP:GQ:PL    0/1:4,5:9:99:159,0,146
3    42754505    rs11713172    C    T    73.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.7;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472921    GT:AD:DP:GQ:PL    0/1:2,3:5:63.31:103,0,63
3    42754912    rs3895740    A    G    87.72    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;MQRankSum=-0.424;QD=5.16;ReadPosRankSum=-0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482100    GT:AD:DP:GQ:PL    0/1:12,4:17:99:118,0,448
3    42781276    rs62246603    G    T    751.54    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.889;DB;DP=67;Dels=0.0;FS=23.258;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-1.061;QD=11.22;ReadPosRankSum=1.306;SNPEFF_AMINO_ACID_CHANGE=L338;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42781126_42781302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310232    GT:AD:DP:GQ:PL    0/1:41,26:67:99:782,0,1215
3    42781316    rs11709500    G    A    480.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=54;Dels=0.0;FS=2.623;HRun=3;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=1.587;QD=8.91;ReadPosRankSum=-1.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310232    GT:AD:DP:GQ:PL    0/1:36,18:54:99:511,0,1044
3    42784216    rs12054446    A    G    103.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.97;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479576    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,146
3    42784630    rs12635736    A    G    376.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.224;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.19;QD=14.48;ReadPosRankSum=-2.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479576    GT:AD:DP:GQ:PL    0/1:13,13:26:99:406,0,416
3    42787469    rs2240859    A    G    887.69    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.975;DB;DP=67;Dels=0.0;FS=4.895;HRun=1;HaplotypeScore=0.9987;MQ=59.03;MQ0=0;MQRankSum=-1.706;QD=13.25;ReadPosRankSum=1.0;SNPEFF_AMINO_ACID_CHANGE=S257;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42787415_42787519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310232    GT:AD:DP:GQ:PL    0/1:34,33:67:99:918,0,984
3    42793337    rs11929390    T    C    195.20    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.386;QD=13.94;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310232    GT:AD:DP:GQ:PL    0/1:6,8:14:99:225,0,196
3    42794333    rs55904344    G    C    108.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=7.73;ReadPosRankSum=0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIGD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431549    GT:AD:DP:GQ:PL    0/1:6,8:14:99:138,0,214
3    42799554    rs111697736    T    TACAC    795.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=104.6385;IndelType=I;MQ=53.19;MQ0=0;QD=39.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310232    GT:AD:DP:GQ:PL    1/1:9,10:20:39.13:837,39,0
3    42799765    rs17238798    G    A    383.02    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.306;DB;DP=42;Dels=0.0;FS=1.345;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.949;QD=9.12;ReadPosRankSum=0.261;SNPEFF_AMINO_ACID_CHANGE=R25W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42799617_42799843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310232    GT:AD:DP:GQ:PL    0/1:27,15:42:99:413,0,837
3    42799858    rs339678    T    A    598.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310232    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:632,48,0
3    42835889    rs6764909    A    G    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIGD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321331    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:119,9,0
3    42917047    rs9865715    A    G    1623.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_AMINO_ACID_CHANGE=S88P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42913684_42917633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP8B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316161    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1657,126,0
3    42954912    rs11129987    C    T    92.35    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=13.19;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF662;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430067    GT:AD:DP:GQ:PL    0/1:2,5:7:67.24:122,0,67
3    42956273    rs1427801    T    C    437.43    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.074;DB;DP=36;Dels=0.0;FS=7.162;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.412;QD=12.15;ReadPosRankSum=0.824;SNPEFF_AMINO_ACID_CHANGE=I236;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_42955819_42959133;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF662;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440367    GT:AD:DP:GQ:PL    0/1:19,17:36:99:467,0,645
3    42956984    rs834579    A    G    119.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.9;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF662;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430067    GT:AD:DP:GQ:PL    0/1:2,4:6:61.90:149,0,62
3    43095112    rs184462308    G    A    1010.98    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.555;DB;DP=63;Dels=0.0;FS=1.31;HRun=1;HaplotypeScore=0.0;MQ=58.52;MQ0=0;MQRankSum=-0.071;QD=16.05;ReadPosRankSum=1.171;SNPEFF_AMINO_ACID_CHANGE=E35K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_43095013_43095135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM198A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000488863    GT:AD:DP:GQ:PL    0/1:30,33:63:99:1041,0,732
3    43095245    rs2280565    A    G    1711.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DB;DP=55;Dels=0.0;FS=7.16;HRun=1;HaplotypeScore=1.993;MQ=59.16;MQ0=0;MQRankSum=-0.752;QD=31.13;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM198A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430121    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1745,107,0
3    43097502    rs3732856    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM198A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434206    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    43591142    rs12638282    G    A    1197.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=59.38;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292246    GT:AD:DP:GQ:PL    1/1:0,37:37:93.28:1231,93,0
3    43592906    rs9829081    T    C    639.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292246    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:673,51,0
3    43602803    rs3772165    C    T    1694.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=R272Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_43602712_43602894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350459    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1727,129,0
3    43607136    rs7616708    T    C    83.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292246    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
3    43756577    rs10662733    C    CTG    163.67    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=117.5269;IndelType=I;MQ=59.92;MQ0=0;MQRankSum=1.517;QD=10.23;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013894    GT:AD:DP:GQ:PL    0/1:11,5:16:46.54:203,0,47
3    44283672    rs9833423    T    C    180.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=22.54;SNPEFF_AMINO_ACID_CHANGE=C43R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_44283378_44283891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:213,18,0
3    44283808    rs7645375    C    A    1636.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.09;MQ0=0;QD=32.09;SNPEFF_AMINO_ACID_CHANGE=P88Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_44283378_44283891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1670,126,0
3    44310592    rs5004668    T    C    257.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
3    44312447    rs11130024    T    A    296.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
3    44332131    rs11927593    T    A    705.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,28:28:66.18:739,66,0
3    44332176    rs1488637    T    C    1603.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1637,120,0
3    44332562    rs73088448    C    T    283.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:317,24,0
3    44345646    rs1488639    A    T    165.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
3    44347660    rs11929217    C    T    378.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:411,30,0
3    44362408    rs9857957    G    A    1135.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309765    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1169,87,0
3    44399668    rs4682970    T    C    817.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342649    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:850,66,0
3    44408864    rs75970869    G    GT    1176.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=3;HaplotypeScore=72.8555;IndelType=I;MQ=59.96;MQ0=0;QD=37.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444602    GT:AD:DP:GQ:PL    1/1:2,29:31:87.29:1219,87,0
3    44437870    rs6441838    A    C    484.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.45;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342649    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:518,39,0
3    44540791    rs36046723    TTC    T    2114.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=214.8945;IndelType=D;MQ=60.27;MQ0=0;QD=37.75;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_44540462_44540793;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF852;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000313378    GT:AD:DP:GQ:PL    1/1:1,55:56:99:2156,157,0
3    44607013    rs13081859    T    C    5630.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8134;MQ=59.45;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=F153S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_44606979_44607147;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273320    GT:AD:DP:GQ:PL    1/1:0,166:167:99:5631,433,0
3    44609626    rs6765468    G    A    426.04    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.97;MQ0=0;QD=30.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273320    GT:AD:DP:GQ:PL    1/1:0,14:14:42.08:459,42,0
3    44610046    rs78534520    T    C    891.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496563    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:924,69,0
3    44611896    rs9835485    A    G    1873    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.59;MQ0=0;QD=35.34;SNPEFF_AMINO_ACID_CHANGE=T281A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_44611417_44612157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447279    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1906,141,0
3    44612050    rs9873604    C    T    4407.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.0321;MQ=59.16;MQ0=0;QD=36.12;SNPEFF_AMINO_ACID_CHANGE=T332I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_44611417_44612157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447279    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4407,325,0
3    44612895    rs2034476    C    G    1993.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.59;MQ0=0;MQRankSum=-1.361;QD=35.6;ReadPosRankSum=-1.237;SNPEFF_AMINO_ACID_CHANGE=N201K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_44612881_44612904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315777    GT:AD:DP:GQ:PL    1/1:1,55:56:99:2026,153,0
3    44613014    rs2034475    G    T    329.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315777    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:363,27,0
3    44620719    rs7653558    C    T    625.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=24;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.0;MQ=55.96;MQ0=0;MQRankSum=-0.315;QD=26.08;ReadPosRankSum=0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341840    GT:AD:DP:GQ:PL    1/1:2,22:24:14.52:659,15,0
3    44620941    rs11707572    C    T    907.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341840    GT:AD:DP:GQ:PL    1/1:0,29:29:78.19:941,78,0
3    44621139    rs4682748    G    A    4212.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=59.64;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341840    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4212,319,0
3    44621285    rs6785876    G    A    3768.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341840    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3768,289,0
3    44621326    rs6777333    T    C    2447.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341840    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2480,205,0
3    44621494    rs6779941    T    C    1334.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=59.44;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341840    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1367,108,0
3    44621980    rs13074938    C    G    761.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341840    GT:AD:DP:GQ:PL    1/1:0,26:26:63.18:794,63,0
3    44622369    rs72860788    G    C    3068.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.509;DB;DP=95;Dels=0.0;FS=4.179;HRun=0;HaplotypeScore=0.7887;MQ=58.72;MQ0=0;MQRankSum=-0.503;QD=32.3;ReadPosRankSum=0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341840    GT:AD:DP:GQ:PL    1/1:1,94:95:99:3102,204,0
3    44671217    rs6769283    G    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF197;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412641    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    44671230    rs6769288    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF197;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412641    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    44673430    rs28699350    G    C    237.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF197;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412641    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:271,21,0
3    44869026    rs4682999    A    T    1059.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481166    GT:AD:DP:GQ:PL    1/1:0,35:35:93.27:1093,93,0
3    44882509    .    G    T    90.14    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DP=17;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.264;QD=5.3;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326047    GT:AD:DP:GQ:PL    0/1:12,5:17:99:120,0,457
3    44915992    rs7621143    T    G    125.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TGM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296125    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:158,12,0
3    44935445    rs75478854    C    T    51.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=17.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TGM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490928    GT:AD:DP:GQ:PL    1/1:0,3:3:9:84,9,0
3    44935446    rs58117421    A    G    51.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=17.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TGM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490928    GT:AD:DP:GQ:PL    1/1:0,3:3:9:84,9,0
3    44943069    rs1995640    C    T    559.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=Y237;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_44943016_44943190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TGM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296125    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:593,45,0
3    44943389    rs1995641    G    A    2021.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=E313K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_44943285_44943423;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TGM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296125    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2054,153,0
3    44959725    rs10576157    CG    C    108.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=10;FS=0.0;HRun=11;HaplotypeScore=40.3608;IndelType=D;MQ=53.87;MQ0=0;MQRankSum=-0.747;QD=10.88;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TGM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296125    GT:AD:DP:GQ:PL    0/1:2,7:10:8.03:147,0,8
3    44974273    rs34991103    AAAAC    A    1240.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=121.1345;IndelType=D;MQ=51.32;MQ0=0;QD=53.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455235    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:1283,69,0
3    45127515    rs9874077    T    C    4191.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.46;MQ0=0;QD=32.49;SNPEFF_AMINO_ACID_CHANGE=D709G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45123770_45127559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296129    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4192,310,0
3    45132577    rs6791801    A    T    419.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296129    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:453,36,0
3    45132637    rs1879240    T    C    702.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296129    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:735,54,0
3    45137087    rs2037358    T    G    492.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296129    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:525,42,0
3    45153422    rs6778556    A    G    131.08    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=18.73;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490471    GT:AD:DP:GQ:PL    0/1:2,5:7:55.05:161,0,55
3    45154080    rs6779301    A    G    535.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296129    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:569,42,0
3    45159734    rs4683048    G    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296129    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    45160011    .    T    C    1009.37    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.193;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.184;QD=14.22;ReadPosRankSum=-0.564;SNPEFF_AMINO_ACID_CHANGE=K62R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45159904_45160113;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296129    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1039,0,880
3    45187671    rs1863837    C    T    70.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.02;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296129    GT:AD:DP:GQ:PL    0/1:2,3:5:63.69:100,0,64
3    45266555    rs33749    T    C    165.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.53;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503771    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
3    45461102    rs11383389    G    GT    1608.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=2;HaplotypeScore=83.6414;IndelType=I;MQ=60.28;MQ0=0;QD=41.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265537    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1651,117,0
3    45500174    rs745551    C    A    642.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=58.71;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265537    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:676,51,0
3    45517799    rs3733117    T    C    698.78    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.284;QD=15.53;ReadPosRankSum=-0.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265537    GT:AD:DP:GQ:PL    0/1:21,24:45:99:729,0,731
3    45527099    rs7640603    C    G    1391.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=37.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265537    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1425,108,0
3    45527218    rs7610357    T    C    2044.38    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=135;Dels=0.0;FS=2.185;HRun=0;HaplotypeScore=2.6516;MQ=59.83;MQ0=0;MQRankSum=-1.324;QD=15.14;ReadPosRankSum=-0.972;SNPEFF_AMINO_ACID_CHANGE=L308;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45527184_45527288;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414984    GT:AD:DP:GQ:PL    0/1:64,71:135:99:2074,0,1880
3    45533224    rs2128361    G    A    657.69    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=45;Dels=0.0;FS=8.856;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-1.084;QD=14.62;ReadPosRankSum=1.571;SNPEFF_AMINO_ACID_CHANGE=A442;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45533009_45533292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414984    GT:AD:DP:GQ:PL    0/1:21,23:45:99:688,0,583
3    45537973    rs12638088    C    T    719.47    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=3.091;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.29;MQ0=0;MQRankSum=-0.192;QD=12.19;ReadPosRankSum=-1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265537    GT:AD:DP:GQ:PL    0/1:34,25:59:99:749,0,1189
3    45557707    rs11549809    G    A    784.62    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=2.053;DB;DP=65;Dels=0.0;FS=2.145;HRun=1;HaplotypeScore=1.9577;MQ=59.57;MQ0=0;MQRankSum=0.748;QD=12.07;ReadPosRankSum=1.509;SNPEFF_AMINO_ACID_CHANGE=T618;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45557586_45557768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414984    GT:AD:DP:GQ:PL    0/1:38,27:65:99:815,0,1099
3    45559519    rs2170549    T    C    1369.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=A680;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45559395_45559564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414984    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1402,114,0
3    45559621    rs2276860    C    T    326.64    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.307;DB;DP=19;Dels=0.0;FS=2.539;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=17.19;ReadPosRankSum=-1.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265537    GT:AD:DP:GQ:PL    0/1:6,13:19:99:357,0,198
3    45565439    rs76190197    G    A    389.97    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.543;DB;DP=24;Dels=0.0;FS=3.074;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=2.02;QD=16.25;ReadPosRankSum=-1.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265537    GT:AD:DP:GQ:PL    0/1:10,14:24:99:420,0,287
3    45565554    rs267220    A    G    1674.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;QD=31.0;SNPEFF_AMINO_ACID_CHANGE=V743;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45565489_45565600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414984    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1707,123,0
3    45583297    rs34191038    C    T    403.34    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.487;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=10.9;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467936    GT:AD:DP:GQ:PL    0/1:21,16:37:99:433,0,635
3    45636335    rs267238    A    G    97.79    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=24;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.702;QD=4.07;ReadPosRankSum=-0.041;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465039    GT:AD:DP:GQ:PL    0/1:11,13:24:99:128,0,238
3    45637253    rs267237    C    T    2173.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=T294;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45636351_45637779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273317    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2206,166,0
3    45637439    rs267236    T    C    1085.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.43;MQ0=0;QD=32.89;SNPEFF_AMINO_ACID_CHANGE=G356;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45636351_45637779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273317    GT:AD:DP:GQ:PL    1/1:0,33:33:84.24:1118,84,0
3    45677635    rs5848761    C    CT    6466.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;FS=0.0;HRun=1;HaplotypeScore=948.7324;IndelType=I;MQ=51.27;MQ0=0;QD=43.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273317    GT:AD:DP:GQ:PL    1/1:106,41:147:99:6467,439,0
3    45677638    rs5848762    CA    C    5524.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;FS=0.0;HRun=2;HaplotypeScore=1016.9839;IndelType=D;MQ=51.52;MQ0=0;QD=38.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273317    GT:AD:DP:GQ:PL    1/1:98,46:144:99:5525,433,0
3    45677815    rs34309138    G    GAGA    509.49    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.66;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=81.815;IndelType=I;MQ=43.94;MQ0=0;MQRankSum=1.317;QD=20.38;ReadPosRankSum=-0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273317    GT:AD:DP:GQ:PL    0/1:15,9:24:99:549,0,628
3    45715159    rs35737275    CT    C    354.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=4;HaplotypeScore=33.9701;IndelType=D;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465039    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:396,33,0
3    45715769    rs74858541    T    C    105.73    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=11.75;ReadPosRankSum=-1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440097    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,152
3    45718327    rs7640969    T    G    738.50    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.378;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=0.887;QD=11.54;ReadPosRankSum=0.873;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440097    GT:AD:DP:GQ:PL    0/1:31,33:64:99:768,0,1002
3    45748429    rs2742441    G    A    426.92    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.713;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=11.54;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389061    GT:AD:DP:GQ:PL    0/1:21,16:37:99:457,0,694
3    45748435    rs2673039    A    G    370.45    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.164;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.455;QD=11.23;ReadPosRankSum=0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389061    GT:AD:DP:GQ:PL    0/1:19,14:33:99:400,0,620
3    45754749    rs2248991    G    A    335.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.955;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.197;QD=15.27;ReadPosRankSum=0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438671    GT:AD:DP:GQ:PL    0/1:11,11:22:99:366,0,393
3    45761115    rs2064062    G    C    560.04    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.171;QD=17.5;ReadPosRankSum=1.728;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463659    GT:AD:DP:GQ:PL    0/1:14,18:32:99:590,0,446
3    45763635    rs2673062    A    G    89.77    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.88;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.88;QD=5.61;ReadPosRankSum=1.758;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463659    GT:AD:DP:GQ:PL    0/1:12,4:16:99:120,0,446
3    45764497    rs77926264    G    A    529.12    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=31;Dels=0.0;FS=2.051;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.223;QD=17.07;ReadPosRankSum=-0.547;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463659    GT:AD:DP:GQ:PL    0/1:12,19:31:99:559,0,410
3    45764544    rs2742449    T    C    344.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=19.16;ReadPosRankSum=-0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463659    GT:AD:DP:GQ:PL    0/1:6,12:18:99:375,0,198
3    45772742    rs2531755    T    C    112.44    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.789;QD=6.25;ReadPosRankSum=-0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389061    GT:AD:DP:GQ:PL    0/1:13,5:18:99:142,0,479
3    45772772    rs2673055    G    A    258.38    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.485;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.28;QD=9.57;ReadPosRankSum=-1.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389061    GT:AD:DP:GQ:PL    0/1:17,10:27:99:288,0,591
3    45773732    rs11709306    G    A    173.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.48;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389061    GT:AD:DP:GQ:PL    0/1:6,6:12:99:204,0,212
3    45776875    rs35082575    CT    C    33.20    QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=1.024;DB;DP=34;FS=2.634;HRun=13;HaplotypeScore=174.2005;IndelType=D;MQ=59.64;MQ0=0;MQRankSum=-0.858;QD=0.98;ReadPosRankSum=0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389061    GT:AD:DP:GQ:PL    0/1:27,7:34:72.22:72,0,497
3    45776900    rs1468543    A    G    333.07    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.261;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1992;MQ=58.55;MQ0=0;MQRankSum=-0.62;QD=10.41;ReadPosRankSum=-1.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389061    GT:AD:DP:GQ:PL    0/1:19,13:32:99:363,0,603
3    45779136    rs1468542    A    T    670.80    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=2.255;DB;DP=71;Dels=0.0;FS=0.982;HRun=3;HaplotypeScore=0.9332;MQ=59.68;MQ0=0;MQRankSum=0.456;QD=9.45;ReadPosRankSum=0.808;SNPEFF_AMINO_ACID_CHANGE=Y111F;SNPEFF_CODON_CHANGE=tAc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45779075_45779144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433336    GT:AD:DP:GQ:PL    0/1:47,24:71:99:701,0,1376
3    45779943    rs1962800    G    A    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389061    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,104
3    45781380    rs13059502    A    G    83.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433336    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:114,0,30
3    45784963    rs9821974    T    C    675.05    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.651;QD=13.5;ReadPosRankSum=0.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433336    GT:AD:DP:GQ:PL    0/1:26,24:50:99:705,0,862
3    45784972    rs145354500    GGT    G    1178.23    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=5.906;DB;DP=54;FS=0.0;HRun=0;HaplotypeScore=265.5807;IndelType=D;MQ=59.16;MQ0=1;MQRankSum=0.313;QD=21.42;ReadPosRankSum=-0.902;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SACM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433336    GT:AD:DP:GQ:PL    0/1:25,30:54:99:1217,0,1289
3    45811885    rs41289606    C    T    400.47    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.793;DB;DP=29;Dels=0.0;FS=2.176;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.153;QD=13.81;ReadPosRankSum=-2.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413781    GT:AD:DP:GQ:PL    0/1:13,16:29:99:430,0,374
3    45813025    rs758387    A    G    180.97    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=13;Dels=0.0;FS=3.282;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.689;QD=13.92;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353278    GT:AD:DP:GQ:PL    0/1:6,7:13:99:211,0,178
3    45813993    rs2276858    G    A    168.39    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=11.23;ReadPosRankSum=-0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353278    GT:AD:DP:GQ:PL    0/1:8,7:15:99:198,0,195
3    45817418    rs758386    A    G    2218.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7332;MQ=58.8;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=C139;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45817253_45817480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353278    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2252,174,0
3    45821624    rs2252547    T    C    127.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353278    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
3    45965386    rs2248228    G    A    159.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
3    45977866    rs4535265    C    T    1508.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1541,120,0
3    45977899    rs1873002    T    C    2211.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2244,169,0
3    45989044    rs2234358    T    G    906.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457814    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:940,69,0
3    45996761    rs1463680    G    A    4055.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.63;MQ0=0;QD=36.21;SNPEFF_AMINO_ACID_CHANGE=L1308;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_45996741_45996885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,112:112:99:4055,304,0
3    46001063    rs1532071    G    A    529.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:563,42,0
3    46006158    rs12630101    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    46007702    rs1994490    T    C    675.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:709,54,0
3    46008790    rs3796375    G    A    2511.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=A679V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46007769_46010195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2544,202,0
3    46009864    rs3733100    C    G    1605.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=29.73;SNPEFF_AMINO_ACID_CHANGE=G321A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46007769_46010195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1638,135,0
3    46010077    rs4683158    C    T    1788.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=35.07;SNPEFF_AMINO_ACID_CHANGE=R250Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46007769_46010195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1822,135,0
3    46016464    rs12639598    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    46016599    rs3821884    T    G    538.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,15:15:45.11:572,45,0
3    46016851    rs751552    A    T    1122.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1155,87,0
3    46016944    rs751553    C    T    234.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:268,21,0
3    46021218    rs4682801    G    T    2206.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.65;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=R89;SNPEFF_CODON_CHANGE=cgC/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46021197_46021322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2239,166,0
3    46026259    rs3733097    G    A    684.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296137    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:717,54,0
3    46399798    rs1799865    T    C    5279.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7986;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=N260;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46398968_46399959;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292301    GT:AD:DP:GQ:PL    1/1:0,149:149:99:5279,388,0
3    46401032    rs3138042    A    G    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421659    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
3    46449978    rs11266744    A    C    2203.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=G136;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46449559_46451014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCRL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399036    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2236,172,0
3    46450070    rs3204849    T    A    2187.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.5;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=F167Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46449559_46451014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCRL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399036    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2221,169,0
3    46479668    rs3213479    A    G    1328.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231751    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1361,99,0
3    46479830    rs3213480    G    A    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231751    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
3    46480958    rs2073495    C    G    1420.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.33;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=E535D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46480787_46480971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426532    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1453,108,0
3    46482980    rs17285324    A    T    659.57    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=43;Dels=0.0;FS=1.543;HRun=1;HaplotypeScore=0.5784;MQ=59.46;MQ0=0;MQRankSum=0.431;QD=15.34;ReadPosRankSum=-0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231751    GT:AD:DP:GQ:PL    0/1:18,25:43:99:690,0,555
3    46484898    rs7615975    T    G    1280.82    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.245;DB;DP=84;Dels=0.0;FS=6.751;HRun=1;HaplotypeScore=2.8853;MQ=58.89;MQ0=0;MQRankSum=0.106;QD=15.25;ReadPosRankSum=0.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443743    GT:AD:DP:GQ:PL    0/1:35,49:84:99:1311,0,925
3    46484964    rs1042073    G    A    1843.74    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.628;DB;DP=110;Dels=0.0;FS=2.529;HRun=0;HaplotypeScore=0.7887;MQ=59.54;MQ0=0;MQRankSum=0.376;QD=16.76;ReadPosRankSum=0.562;SNPEFF_AMINO_ACID_CHANGE=N497;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46484932_46485073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426532    GT:AD:DP:GQ:PL    0/1:51,58:110:99:1874,0,1477
3    46487003    rs2269435    A    G    146.74    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=56.35;MQ0=0;MQRankSum=0.555;QD=11.29;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443743    GT:AD:DP:GQ:PL    0/1:6,7:13:99:177,0,155
3    46488854    rs2239692    T    C    1420.29    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.113;DB;DP=93;Dels=0.0;FS=2.697;HRun=2;HaplotypeScore=2.5015;MQ=60.0;MQ0=0;MQRankSum=0.172;QD=15.27;ReadPosRankSum=-1.769;SNPEFF_AMINO_ACID_CHANGE=G372;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46488799_46488889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426532    GT:AD:DP:GQ:PL    0/1:44,49:93:99:1450,0,1278
3    46489015    rs743659    A    G    290.76    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.002;QD=19.38;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231751    GT:AD:DP:GQ:PL    0/1:6,9:15:99:321,0,202
3    46490366    rs2230895    G    A    277.62    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.54;QD=10.68;ReadPosRankSum=-0.694;SNPEFF_AMINO_ACID_CHANGE=I356;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46490354_46490508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426532    GT:AD:DP:GQ:PL    0/1:14,12:26:99:308,0,351
3    46490474    rs2230894    G    A    203.17    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.914;DB;DP=20;Dels=0.0;FS=2.081;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.529;QD=10.16;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=V320;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46490354_46490508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426532    GT:AD:DP:GQ:PL    0/1:11,9:20:99:233,0,187
3    46491948    rs6774882    T    A    95.66    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=7.97;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431944    GT:AD:DP:GQ:PL    0/1:7,5:12:99:126,0,247
3    46495716    rs17135    C    T    1239.57    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.543;DB;DP=70;Dels=0.0;FS=2.335;HRun=1;HaplotypeScore=1.9893;MQ=60.0;MQ0=0;MQRankSum=1.008;QD=17.71;ReadPosRankSum=0.902;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415180    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1270,0,1077
3    46496642    rs6776621    C    G    34.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.33;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415180    GT:AD:DP:GQ:PL    0/1:5,3:8:64.59:65,0,142
3    46497675    rs3796377    A    G    104.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=57.39;MQ0=0;MQRankSum=-0.248;QD=11.6;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498301    GT:AD:DP:GQ:PL    0/1:3,6:9:98.90:134,0,99
3    46497723    rs4683227    C    G    258.42    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.545;QD=18.46;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498301    GT:AD:DP:GQ:PL    0/1:5,9:14:99:288,0,157
3    46501100    rs17078878    C    A    177.53    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.421;DB;DP=23;Dels=0.0;FS=2.066;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.355;QD=7.72;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498301    GT:AD:DP:GQ:PL    0/1:15,8:23:99:208,0,541
3    46501213    rs1126478    T    C    311.74    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.091;DB;DP=30;Dels=0.0;FS=1.536;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.162;QD=10.39;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=K34R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46501146_46501309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443496    GT:AD:DP:GQ:PL    0/1:17,13:30:99:342,0,469
3    46501268    rs1126477    C    T    287.94    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=55.49;MQ0=0;MQRankSum=-0.716;QD=12.0;ReadPosRankSum=-0.119;SNPEFF_AMINO_ACID_CHANGE=A16T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46501146_46501309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443496    GT:AD:DP:GQ:PL    0/1:9,15:24:99:318,0,221
3    46501284    rs10662431    C    CCTT    1517.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=126.1685;IndelType=I;MQ=54.68;MQ0=0;QD=60.72;SNPEFF_AMINO_ACID_CHANGE=R10KG;SNPEFF_CODON_CHANGE=agg/aAAGgg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_3_46501146_46501309;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443496    GT:AD:DP:GQ:PL    1/1:2,23:25:69.24:1560,69,0
3    46509712    rs72900270    A    G    702.03    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.513;DB;DP=53;Dels=0.0;FS=5.825;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.044;QD=13.25;ReadPosRankSum=0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443496    GT:AD:DP:GQ:PL    0/1:26,27:53:99:732,0,651
3    46539480    rs4683241    A    T    91.14    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=6.51;ReadPosRankSum=1.003;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_46538981_46539707;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296142    GT:AD:DP:GQ:PL    0/1:10,4:14:99:121,0,334
3    46539864    rs11130092    C    T    118.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.92;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296142    GT:AD:DP:GQ:PL    0/1:3,4:7:49.73:148,0,50
3    46580324    rs7651745    G    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296144    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
3    46593147    rs1879325    A    G    362.54    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.622;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.985;QD=15.11;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296144    GT:AD:DP:GQ:PL    0/1:11,13:24:99:393,0,364
3    46621123    rs9819070    A    T    1747.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104304.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296145    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1781,141,0
3    46713102    rs6776565    C    T    291.83    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=23;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=3.5611;MQ=57.97;MQ0=0;MQRankSum=-1.936;QD=12.69;ReadPosRankSum=1.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:12,11:23:99:322,0,252
3    46713457    rs7625303    C    G    158.42    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.09;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=3.96;ReadPosRankSum=-0.545;SNPEFF_AMINO_ACID_CHANGE=T214;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46713374_46713523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383742    GT:AD:DP:GQ:PL    0/1:29,11:40:99:188,0,978
3    46713764    rs61277784    G    A    32.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.406;QD=5.35;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:3,3:6:62.10:62,0,105
3    46714797    rs11130103    C    T    112.91    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.58;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:143,0,26
3    46714821    rs11130104    C    G    93.96    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=18.79;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:1,4:5:27.19:124,0,27
3    46717065    rs7635360    C    G    343.01    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.917;DB;DP=35;Dels=0.0;FS=1.672;HRun=0;HaplotypeScore=1.8401;MQ=59.47;MQ0=0;MQRankSum=1.15;QD=9.8;ReadPosRankSum=0.483;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:20,15:35:99:373,0,695
3    46717931    rs6808525    T    C    482.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    1/1:0,17:17:45.10:515,45,0
3    46717957    rs9876451    A    G    380.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:414,30,0
3    46718298    rs6806400    A    G    995.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    1/1:0,37:37:87.19:1028,87,0
3    46722692    rs13080080    G    T    2816.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9688;MQ=59.51;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2849,214,0
3    46723551    rs4683310    G    A    91.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=20;Dels=0.0;FS=8.495;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=4.56;ReadPosRankSum=-1.545;SNPEFF_AMINO_ACID_CHANGE=H381;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46723519_46723584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:12,8:20:99:121,0,430
3    46724548    rs9847395    C    T    136.54    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=19.51;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:2,5:7:60.89:167,0,61
3    46724569    rs9847407    C    T    175.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=14.61;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:6,6:12:99:205,0,166
3    46725110    rs9810659    A    G    905.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:939,69,0
3    46725120    rs9868213    T    G    1326.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1360,102,0
3    46728659    rs7633016    G    A    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
3    46729757    rs7642448    C    G    477.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.226;DB;DP=24;Dels=0.0;FS=5.275;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.42;QD=19.89;ReadPosRankSum=0.613;SNPEFF_AMINO_ACID_CHANGE=E45Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46729588_46729786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALS2CL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318962    GT:AD:DP:GQ:PL    0/1:8,16:24:99:507,0,268
3    46750553    rs11130106    G    A    579.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRSS50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315170    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:613,48,0
3    46751073    rs111033328    TAAG    T    3453.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;FS=0.0;HRun=0;HaplotypeScore=518.5404;IndelType=D;MQ=59.52;MQ0=0;QD=30.29;SNPEFF_AMINO_ACID_CHANGE=K123-;SNPEFF_CODON_CHANGE=aag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_3_46751069_46752376;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326431    GT:AD:DP:GQ:PL    1/1:34,80:114:99:3453,250,0
3    46783919    .    T    C    1577.60    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.48;MQ0=0;MQRankSum=0.854;QD=12.33;ReadPosRankSum=-1.136;SNPEFF_AMINO_ACID_CHANGE=N203S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46783840_46784073;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRSS45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442359    GT:AD:DP:GQ:PL    0/1:68,60:128:99:1608,0,2066
3    46933960    rs1001284    C    G    588.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=28.0;SNPEFF_AMINO_ACID_CHANGE=T142S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46933796_46934087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTH1R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313063    GT:AD:DP:GQ:PL    1/1:0,21:21:51.13:621,51,0
3    46934292    rs4683300    C    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTH1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313049    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
3    46941116    rs2242116    A    G    71.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTH1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490109    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
3    46944274    rs1138518    T    C    2061.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=N35;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_46944239_46944280;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTH1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422115    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2094,157,0
3    46945263    rs71807741    G    GA    116.61    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=17;FS=0.0;HRun=10;HaplotypeScore=39.493;IndelType=I;MQ=60.56;MQ0=0;MQRankSum=1.517;QD=6.86;ReadPosRankSum=-0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTH1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427125    GT:AD:DP:GQ:PL    0/1:11,6:17:99:156,0,112
3    46963502    rs4587    T    C    657.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446836    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:691,54,0
3    46965197    rs2290546    C    G    153.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494655    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:186,15,0
3    46967040    rs2290545    G    A    695.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292314    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:728,54,0
3    46982365    rs6804732    T    C    1021.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292314    GT:AD:DP:GQ:PL    1/1:0,29:29:81.21:1055,81,0
3    46982762    rs4682843    A    G    152.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292314    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:185,15,0
3    46982774    rs4683293    T    C    111.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292314    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
3    46982779    rs4682841    G    A    112.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292314    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
3    47018214    rs936181    T    C    333.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=A16;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47018127_47018270;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292314    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:367,30,0
3    47031237    rs4282092    C    G    78.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292309    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
3    47033937    rs13066214    C    T    603.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=37.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292309    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:636,48,0
3    47035625    rs936185    G    A    157.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=26.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292309    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
3    47038135    rs11396344    C    CA    484.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=44.1705;IndelType=I;MQ=59.88;MQ0=0;QD=44.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292309    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:527,33,0
3    47043538    rs2305634    C    T    267.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=S1453;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47043410_47043778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292309    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:300,24,0
3    47044122    rs11928558    A    T    121.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475689    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
3    47045739    rs1079276    C    G    4249.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.966;MQ=58.91;MQ0=0;QD=33.2;SNPEFF_AMINO_ACID_CHANGE=P1834;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47045567_47045883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292309    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4250,325,0
3    47045846    rs2305637    C    T    489.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=36;Dels=0.0;FS=4.21;HRun=1;HaplotypeScore=2.3937;MQ=58.71;MQ0=0;MQRankSum=0.166;QD=13.59;ReadPosRankSum=-1.087;SNPEFF_AMINO_ACID_CHANGE=S1870F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47045567_47045883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292309    GT:AD:DP:GQ:PL    0/1:14,21:36:99:519,0,365
3    47046842    rs2305638    G    C    426.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=25.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475689    GT:AD:DP:GQ:PL    1/1:0,16:17:39.11:460,39,0
3    47047176    rs34119582    A    AG    539.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=5;HaplotypeScore=31.1196;IndelType=I;MQ=60.67;MQ0=0;QD=33.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475689    GT:AD:DP:GQ:PL    1/1:1,15:16:45.14:581,45,0
3    47047358    rs13081418    A    C    495.42    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=45;Dels=0.0;FS=2.683;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.931;QD=11.01;ReadPosRankSum=-0.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441027    GT:AD:DP:GQ:PL    0/1:26,19:45:99:525,0,864
3    47059323    rs2385867    C    T    136.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:169,12,0
3    47061183    rs2290547    G    A    219.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.384;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.854;QD=12.2;ReadPosRankSum=1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    0/1:9,9:18:99:250,0,306
3    47079112    rs6768722    G    A    289.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479832    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:322,24,0
3    47103861    rs34058239    GTT    G    1362.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.466;DB;DP=66;FS=0.0;HRun=14;HaplotypeScore=322.549;IndelType=D;MQ=58.82;MQ0=2;MQRankSum=1.266;QD=20.03;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    1/1:16,51:66:99:1404,147,0
3    47108330    rs9844122    C    T    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
3    47108515    rs79752114    G    A    1379.03    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=0.469;DB;DP=135;Dels=0.0;FS=0.728;HRun=4;HaplotypeScore=0.734;MQ=59.55;MQ0=0;MQRankSum=0.483;QD=10.22;ReadPosRankSum=1.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    0/1:77,58:135:99:1409,0,2404
3    47125385    rs4082155    G    A    2174.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_AMINO_ACID_CHANGE=P1962L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47125210_47125872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2208,163,0
3    47125916    rs5848822    CT    C    38.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=13;FS=0.0;HRun=16;HaplotypeScore=75.4055;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=0.742;QD=2.97;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484689    GT:AD:DP:GQ:PL    1/1:4,6:13:13.89:80,14,0
3    47129454    rs66851205    TAAAC    T    200.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=36.327;IndelType=D;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484689    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:242,15,0
3    47129903    rs12631730    C    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
3    47139651    .    T    C    404.48    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.189;QD=23.79;ReadPosRankSum=-0.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    0/1:3,14:17:68.09:434,0,68
3    47142907    rs66838766    TCC    T    5609.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;FS=0.0;HRun=4;HaplotypeScore=481.4836;IndelType=D;MQ=58.78;MQ0=3;QD=41.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409792    GT:AD:DP:GQ:PL    1/1:3,133:132:99:5609,385,0
3    47162661    rs6767907    A    G    3546.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_AMINO_ACID_CHANGE=N1111;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47161973_47166038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412450    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3547,259,0
3    47276968    rs2276854    C    T    805.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352910    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:838,66,0
3    47277458    rs1874264    A    G    755.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487440    GT:AD:DP:GQ:PL    1/1:1,28:29:66.16:789,66,0
3    47277885    rs13094438    G    A    404.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487440    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:438,33,0
3    47282303    rs2276853    G    A    1555.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_AMINO_ACID_CHANGE=R480W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47282291_47282505;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352910    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1588,117,0
3    47286227    rs6772449    G    T    1784.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443784    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1817,135,0
3    47287603    rs35871850    A    AT    438.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=22.3932;IndelType=I;MQ=61.07;MQ0=0;QD=43.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443784    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:480,30,0
3    47316725    rs903538    G    A    356.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425452    GT:AD:DP:GQ:PL    1/1:1,10:11:30.09:389,30,0
3    47318747    rs924009    T    G    521.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265529    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:554,42,0
3    47322133    rs811115    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265529    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
3    47322496    rs807936    C    T    1725.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265529    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1759,141,0
3    47376095    rs295450    A    G    952.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232766    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:985,75,0
3    47384925    rs295457    G    T    322.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461084    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
3    47437449    rs900693    C    A    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265562    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:124,9,0
3    47447673    rs13077134    C    G    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265562    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
3    47449058    rs900688    T    C    3530.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=T294;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47448995_47449074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456408    GT:AD:DP:GQ:PL    1/1:0,111:112:99:3530,274,0
3    47449580    rs1531874    T    C    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456221    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
3    47452087    rs900689    G    A    864.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=P933;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47451418_47453176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265562    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:898,66,0
3    47452786    rs1531875    G    A    756.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=34.38;SNPEFF_AMINO_ACID_CHANGE=E1166;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47451418_47453176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265562    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:789,60,0
3    47454399    rs6789730    G    A    556.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.14;MQ0=0;QD=20.6;SNPEFF_AMINO_ACID_CHANGE=P1545;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47454196_47454931;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265562    GT:AD:DP:GQ:PL    1/1:0,23:27:51.13:589,51,0
3    47455086    rs4858868    G    A    268.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265562    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:301,24,0
3    47456225    rs6442066    T    C    2005.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4703;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PTPN23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265562    GT:AD:DP:GQ:PL    1/1:0,57:58:99:2038,153,0
3    47462200    rs900690    T    C    672.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.02;SNPEFF_AMINO_ACID_CHANGE=G162;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47462077_47462262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383739    GT:AD:DP:GQ:PL    1/1:0,24:24:54.17:706,54,0
3    47462587    rs900691    A    G    1157.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428413    GT:AD:DP:GQ:PL    1/1:0,31:31:90.27:1190,90,0
3    47464122    rs1038394    A    G    239.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428413    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:273,21,0
3    47484126    rs900692    G    C    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265565    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
3    47539751    rs2170814    T    C    914.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412761    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:948,72,0
3    47539969    rs13059519    C    T    1611.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=28.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414236    GT:AD:DP:GQ:PL    1/1:1,55:57:99:1645,123,0
3    47543389    rs3816779    G    A    212.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485029    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
3    47555142    rs2291298    C    A    480.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483205    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:513,39,0
3    47603926    rs11456803    A    AT    1079.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=7;HaplotypeScore=75.6733;IndelType=I;MQ=59.61;MQ0=0;QD=34.84;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264723    GT:AD:DP:GQ:PL    1/1:2,29:31:93.29:1122,93,0
3    47604299    rs4858839    C    T    1496.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.93;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264723    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1530,114,0
3    47614413    rs2280567    G    A    206.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465441    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:240,18,0
3    47618953    rs3732530    C    A    966.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=34.53;SNPEFF_AMINO_ACID_CHANGE=G188V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47618323_47619418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264723    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:1000,75,0
3    47645933    rs62262079    A    T    524.24    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.977;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=17.47;ReadPosRankSum=-0.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    0/1:14,16:30:99:554,0,465
3    47676902    rs72581966    C    CA    1397.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=62.5593;IndelType=I;MQ=59.59;MQ0=0;QD=42.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    1/1:2,31:33:96.33:1439,96,0
3    47680066    rs12633923    C    T    358.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:392,30,0
3    47680119    rs12636863    T    C    763.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=36.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:797,60,0
3    47704222    rs9840859    G    T    254.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
3    47712202    rs1141601    T    C    505.96    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.216;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.539;QD=19.46;ReadPosRankSum=0.593;SNPEFF_AMINO_ACID_CHANGE=K615;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_47712148_47712207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    0/1:9,17:26:99:536,0,248
3    47751998    rs2047558    T    C    249.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
3    47762030    rs12495204    A    G    809.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    1/1:0,27:28:72.20:843,72,0
3    47762483    rs7618758    C    T    86.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254480    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
3    47882727    rs17290490    C    T    624.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348968    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:657,48,0
3    47884953    rs319694    C    T    85.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=21.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441384    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
3    48019232    rs6770467    A    G    853.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360240    GT:AD:DP:GQ:PL    1/1:0,24:24:72.20:887,72,0
3    48019258    rs6770477    A    G    1101.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360240    GT:AD:DP:GQ:PL    1/1:0,34:34:96.26:1135,96,0
3    48205625    rs41290676    T    C    610.19    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=0.669;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.629;QD=19.68;ReadPosRankSum=1.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459900    GT:AD:DP:GQ:PL    0/1:12,19:31:99:640,0,402
3    48209486    rs3731539    C    T    862.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=39.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302506    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:896,66,0
3    48219320    rs3731514    AAC    A    6289.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.269;DB;DP=215;FS=6.77;HRun=0;HaplotypeScore=764.4713;IndelType=D;MQ=58.52;MQ0=1;MQRankSum=0.559;QD=28.98;ReadPosRankSum=1.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302506    GT:AD:DP:GQ:PL    1/1:38,176:215:99:6290,442,0
3    48414197    rs9852211    A    T    2128.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436231    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2161,160,0
3    48414215    rs9815103    G    A    842.50    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.45;MQ0=0;MQRankSum=-0.886;QD=11.09;ReadPosRankSum=0.685;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436231    GT:AD:DP:GQ:PL    0/1:47,29:76:99:872,0,1267
3    48415007    rs4858793    C    G    400.40    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.68;DB;DP=31;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.324;QD=12.92;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296438    GT:AD:DP:GQ:PL    0/1:16,15:31:99:430,0,512
3    48416756    rs4858817    A    G    387.15    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.024;DB;DP=26;Dels=0.0;FS=3.078;HRun=3;HaplotypeScore=0.9469;MQ=59.11;MQ0=0;MQRankSum=-0.778;QD=14.89;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296438    GT:AD:DP:GQ:PL    0/1:11,15:26:99:417,0,361
3    48419689    rs7653691    C    T    71.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=11.9;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296438    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,108
3    48419723    rs7630741    G    T    69.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.74;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296438    GT:AD:DP:GQ:PL    0/1:6,3:9:99:100,0,186
3    48419897    rs6442117    C    T    306.29    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.942;DB;DP=31;Dels=0.0;FS=1.483;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.62;QD=9.88;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=R147W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48419807_48420016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445170    GT:AD:DP:GQ:PL    0/1:18,13:31:99:336,0,559
3    48422235    rs6784322    T    A    530.07    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=45;Dels=0.0;FS=1.154;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-1.291;QD=11.78;ReadPosRankSum=0.697;SNPEFF_AMINO_ACID_CHANGE=V116D;SNPEFF_CODON_CHANGE=gTt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48422192_48422402;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436231    GT:AD:DP:GQ:PL    0/1:25,20:45:99:560,0,748
3    48423656    rs7635522    T    G    121.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296438    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
3    48450706    rs3217706    TC    T    257.04    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.877;DB;DP=24;FS=1.935;HRun=7;HaplotypeScore=89.1915;IndelType=D;MQ=59.03;MQ0=0;MQRankSum=0.769;QD=10.71;ReadPosRankSum=2.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449094    GT:AD:DP:GQ:PL    0/1:12,12:24:99:296,0,346
3    48451300    rs3214871    AG    A    173.41    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=3.0;DB;DP=20;FS=2.199;HRun=2;HaplotypeScore=49.696;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=0.296;QD=8.67;ReadPosRankSum=0.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449094    GT:AD:DP:GQ:PL    0/1:13,7:20:99:212,0,483
3    48454468    rs3214041    C    T    896.39    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.14;DB;DP=76;Dels=0.0;FS=2.151;HRun=0;HaplotypeScore=0.7887;MQ=59.45;MQ0=0;MQRankSum=0.263;QD=11.79;ReadPosRankSum=0.846;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449094    GT:AD:DP:GQ:PL    0/1:44,32:76:99:926,0,1309
3    48455626    rs6794875    A    G    44.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.24;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462738    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:75,0,33
3    48461313    rs2362450    C    G    177.18    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9982;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.11;ReadPosRankSum=-0.466;SNPEFF_AMINO_ACID_CHANGE=P794;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48460986_48461666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296440    GT:AD:DP:GQ:PL    0/1:5,6:11:99:207,0,153
3    48462461    rs11130171    A    G    157.20    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=13;Dels=0.0;FS=2.276;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=12.09;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473683    GT:AD:DP:GQ:PL    0/1:7,6:13:99:187,0,253
3    48463618    rs9883759    T    A    197.57    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.185;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.198;QD=8.59;ReadPosRankSum=0.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473683    GT:AD:DP:GQ:PL    0/1:15,8:23:99:228,0,504
3    48463711    rs9883927    T    C    168.94    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=15.36;ReadPosRankSum=1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473683    GT:AD:DP:GQ:PL    0/1:5,6:11:99:199,0,156
3    48463856    rs142527941    G    A    76.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.88;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=P435S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48463740_48463868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296440    GT:AD:DP:GQ:PL    0/1:4,3:7:71.95:106,0,72
3    48474249    rs2279077    A    G    788.52    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.042;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.733;QD=13.36;ReadPosRankSum=-0.156;SNPEFF_AMINO_ACID_CHANGE=L160;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48473580_48474576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC51;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412398    GT:AD:DP:GQ:PL    0/1:27,31:59:99:819,0,887
3    48476431    rs13062723    C    G    1247.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_AMINO_ACID_CHANGE=L36;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48476227_48476546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC51;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395694    GT:AD:DP:GQ:PL    1/1:0,37:37:96.26:1280,96,0
3    48481647    rs3774808    G    A    93.88    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=7.82;ReadPosRankSum=1.788;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_48481506_48481866;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC51;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438370    GT:AD:DP:GQ:PL    0/1:7,5:12:99:124,0,210
3    48485493    rs7126    A    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479126    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    48491367    .    T    G    224.45    HaplotypeScoreFilter13;QDFilter2    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.337;DP=126;Dels=0.0;FS=47.196;HRun=3;HaplotypeScore=19.3474;MQ=55.63;MQ0=1;MQRankSum=-0.423;QD=1.78;ReadPosRankSum=4.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320211    GT:AD:DP:GQ:PL    0/1:51,75:126:99:254,0,1239
3    48505302    rs6442124    A    G    665.53    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.544;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7206;MQ=60.0;MQ0=0;MQRankSum=-0.813;QD=13.87;ReadPosRankSum=-1.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421175    GT:AD:DP:GQ:PL    0/1:22,26:48:99:696,0,569
3    48505964    rs2242150    C    A    1179.63    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=0.513;DB;DP=67;Dels=0.0;FS=5.002;HRun=1;HaplotypeScore=0.9987;MQ=59.66;MQ0=0;MQRankSum=0.335;QD=17.61;ReadPosRankSum=-1.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454733    GT:AD:DP:GQ:PL    0/1:27,40:67:99:1210,0,782
3    48508585    rs11797    C    T    553.37    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.543;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.665;QD=13.5;ReadPosRankSum=-0.796;SNPEFF_AMINO_ACID_CHANGE=Y167;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48508067_48509042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TREX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444177    GT:AD:DP:GQ:PL    0/1:20,21:41:99:583,0,666
3    48602523    rs7624006    G    GGGC    1535.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=148.5818;IndelType=I;MQ=48.82;MQ0=0;QD=63.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422991    GT:AD:DP:GQ:PL    1/1:5,18:24:69.24:1578,69,0
3    48625266    rs1264194    T    C    243.83    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.554;DB;DP=25;Dels=0.0;FS=1.76;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.092;QD=9.75;ReadPosRankSum=-0.769;SNPEFF_AMINO_ACID_CHANGE=P939;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48625226_48625372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL7A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328333    GT:AD:DP:GQ:PL    0/1:14,11:25:99:274,0,380
3    48636648    .    C    G    459.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.379;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8653;MQ=60.0;MQ0=0;MQRankSum=-0.749;QD=10.93;ReadPosRankSum=0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UQCRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412343    GT:AD:DP:GQ:PL    0/1:24,18:42:99:489,0,633
3    48680470    rs112843572    C    T    651.67    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.498;DB;DP=36;Dels=0.0;FS=1.691;HRun=0;HaplotypeScore=0.8667;MQ=58.71;MQ0=0;MQRankSum=0.866;QD=18.1;ReadPosRankSum=0.61;SNPEFF_AMINO_ACID_CHANGE=R2779Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48680400_48680516;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000164024    GT:AD:DP:GQ:PL    0/1:15,21:36:99:682,0,299
3    48719638    rs7633840    T    C    717.07    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6637;MQ=58.33;MQ0=0;MQRankSum=0.109;QD=17.07;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKIPSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294129    GT:AD:DP:GQ:PL    0/1:18,23:42:99:747,0,545
3    48727112    rs4858798    G    A    560.99    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=35;Dels=0.0;FS=1.545;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.099;QD=16.03;ReadPosRankSum=0.78;SNPEFF_AMINO_ACID_CHANGE=Y213;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_48726971_48727146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IP6K2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328631    GT:AD:DP:GQ:PL    0/1:13,21:35:99:591,0,420
3    48845251    rs9311430    C    T    321.56    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.14;MQ0=0;MQRankSum=0.334;QD=11.91;ReadPosRankSum=-0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265563    GT:AD:DP:GQ:PL    0/1:14,12:27:99:352,0,468
3    48897078    rs6414612    A    G    2106.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319017    GT:AD:DP:GQ:PL    1/1:0,60:61:99:2139,169,0
3    48900347    rs7431857    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319017    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
3    49004723    rs6446196    A    G    476.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=38;Dels=0.0;FS=3.928;HRun=0;HaplotypeScore=0.8667;MQ=59.01;MQ0=0;MQRankSum=-0.562;QD=12.53;ReadPosRankSum=1.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430423    GT:AD:DP:GQ:PL    0/1:19,19:38:99:506,0,630
3    49044767    rs6781790    C    T    97.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.15;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P4HTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343546    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,138
3    49049501    .    T    G    276.47    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.835;DP=46;Dels=0.0;FS=47.544;HRun=2;HaplotypeScore=4.377;MQ=48.99;MQ0=0;MQRankSum=-2.525;QD=6.01;ReadPosRankSum=1.601;SNPEFF_AMINO_ACID_CHANGE=G127;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49049068_49051549;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448293    GT:AD:DP:GQ:PL    0/1:20,25:46:99:306,0,584
3    49052785    rs8926    T    A    430.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.417;QD=17.94;ReadPosRankSum=0.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DALRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313778    GT:AD:DP:GQ:PL    0/1:9,15:24:99:460,0,255
3    49053219    rs7100    A    G    1200.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.979;DB;DP=86;Dels=0.0;FS=3.031;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.163;QD=13.96;ReadPosRankSum=0.453;SNPEFF_AMINO_ACID_CHANGE=P203;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49053186_49053293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354294    GT:AD:DP:GQ:PL    0/1:43,43:86:99:1231,0,1286
3    49054692    rs3087866    T    C    1478.34    PASS    AB=0.454;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.783;DB;DP=97;Dels=0.0;FS=1.824;HRun=1;HaplotypeScore=1.7262;MQ=59.09;MQ0=0;MQRankSum=0.129;QD=15.24;ReadPosRankSum=-0.393;SNPEFF_AMINO_ACID_CHANGE=Q132R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49054661_49054789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DALRD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313778    GT:AD:DP:GQ:PL    0/1:44,53:97:99:1508,0,1344
3    49057545    .    T    C    251.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=1.5781;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=16.77;ReadPosRankSum=-0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326739    GT:AD:DP:GQ:PL    0/1:6,9:15:99:282,0,206
3    49070499    rs4974081    C    T    147.11    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=13.37;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479449    GT:AD:DP:GQ:PL    0/1:5,6:11:99:177,0,173
3    49113957    rs66657597    TA    T    128.98    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.771;DB;DP=30;FS=0.0;HRun=14;HaplotypeScore=211.8257;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=0.849;QD=4.3;ReadPosRankSum=0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411682    GT:AD:DP:GQ:PL    0/1:16,12:30:99:168,0,248
3    49114544    rs7626445    C    T    138.56    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.696;QD=10.66;ReadPosRankSum=-2.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357496    GT:AD:DP:GQ:PL    0/1:8,5:13:99:169,0,288
3    49135961    rs13064784    C    G    429.15    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5769;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=14.8;ReadPosRankSum=-1.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=QARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417025    GT:AD:DP:GQ:PL    0/1:12,17:29:99:459,0,378
3    49137904    rs4521268    G    T    182.67    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=22;Dels=0.0;FS=1.957;HRun=1;HaplotypeScore=1.841;MQ=60.0;MQ0=0;MQRankSum=0.347;QD=8.3;ReadPosRankSum=-1.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=QARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417025    GT:AD:DP:GQ:PL    0/1:12,8:22:99:213,0,354
3    49139966    rs4513485    G    A    136.28    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=10.48;ReadPosRankSum=-1.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=QARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417025    GT:AD:DP:GQ:PL    0/1:8,5:13:99:166,0,295
3    49148890    rs4292260    T    C    153.84    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.072;DB;DP=28;Dels=0.0;FS=9.416;HRun=3;HaplotypeScore=0.9996;MQ=59.17;MQ0=0;MQRankSum=0.551;QD=5.49;ReadPosRankSum=-1.654;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306026    GT:AD:DP:GQ:PL    0/1:18,10:28:99:184,0,622
3    49156676    rs4279134    A    G    816.44    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.728;QD=17.37;ReadPosRankSum=0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305544    GT:AD:DP:GQ:PL    0/1:17,30:47:99:846,0,458
3    49166069    rs9865051    C    T    897.51    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.639;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.65;MQ0=0;MQRankSum=-0.693;QD=13.81;ReadPosRankSum=0.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494831    GT:AD:DP:GQ:PL    0/1:31,34:65:99:928,0,949
3    49200627    rs4955418    A    G    617.42    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=36;Dels=0.0;FS=3.296;HRun=0;HaplotypeScore=2.867;MQ=59.36;MQ0=0;MQRankSum=-1.187;QD=17.15;ReadPosRankSum=-0.257;SNPEFF_AMINO_ACID_CHANGE=W339R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49199968_49201693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321895    GT:AD:DP:GQ:PL    0/1:15,21:36:99:647,0,491
3    49200692    rs4955419    T    A    588.76    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.405;DB;DP=31;Dels=0.0;FS=3.853;HRun=0;HaplotypeScore=0.9999;MQ=59.25;MQ0=0;MQRankSum=-0.067;QD=18.99;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=Q317L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49199968_49201693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321895    GT:AD:DP:GQ:PL    0/1:12,19:31:99:619,0,374
3    49211989    rs10865954    T    C    113.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332780    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:146,12,0
3    49249381    rs9867285    A    G    402.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.964;QD=20.12;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296449    GT:AD:DP:GQ:PL    0/1:8,12:20:99:432,0,270
3    49272589    rs7619016    C    T    96.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=-0.437;QD=6.02;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296449    GT:AD:DP:GQ:PL    0/1:10,6:16:99:126,0,258
3    49273996    rs12631989    C    T    710.06    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=46;Dels=0.0;FS=4.579;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.039;QD=15.44;ReadPosRankSum=-1.519;SNPEFF_AMINO_ACID_CHANGE=S14;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49273981_49274155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451634    GT:AD:DP:GQ:PL    0/1:20,26:46:99:740,0,566
3    49298139    rs7626076    G    A    181.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.398;DB;DP=24;Dels=0.0;FS=1.893;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.153;QD=7.56;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=V32M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49297518_49298749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-3B7.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440528    GT:AD:DP:GQ:PL    0/1:16,8:24:99:211,0,533
3    49298205    rs4955417    T    C    551.43    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.19;DB;DP=38;Dels=0.0;FS=4.887;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-1.886;QD=14.51;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=W54R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49297518_49298749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-3B7.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440528    GT:AD:DP:GQ:PL    0/1:18,20:38:99:581,0,515
3    49315575    rs11348001    CT    C    62.99    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=21;FS=0.0;HRun=13;HaplotypeScore=146.8025;IndelType=D;MQ=56.0;MQ0=0;MQRankSum=1.555;QD=3.0;ReadPosRankSum=0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485450    GT:AD:DP:GQ:PL    0/1:16,5:21:99:102,0,236
3    49354975    rs71077785    GT    G    116.77    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.305;DB;DP=39;FS=0.0;HRun=16;HaplotypeScore=243.9852;IndelType=D;MQ=54.56;MQ0=0;MQRankSum=0.915;QD=2.99;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265560    GT:AD:DP:GQ:PL    0/1:24,11:39:99:156,0,140
3    49362892    rs1865741    A    G    294.95    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=17.35;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265560    GT:AD:DP:GQ:PL    0/1:7,10:17:99:325,0,232
3    49365269    rs6795772    C    T    875.67    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.387;DB;DP=45;Dels=0.0;FS=1.271;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.174;QD=19.46;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265560    GT:AD:DP:GQ:PL    0/1:16,29:45:99:906,0,541
3    49406080    rs2878298    T    C    433.76    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.245;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=13.99;ReadPosRankSum=0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431929    GT:AD:DP:GQ:PL    0/1:16,15:31:99:464,0,552
3    49459114    rs4855873    A    C    94.55    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=7.88;ReadPosRankSum=1.468;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498571    GT:AD:DP:GQ:PL    0/1:8,4:12:99:125,0,293
3    49459376    rs1464566    T    C    192.46    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.296;QD=19.25;ReadPosRankSum=-0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NICN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273598    GT:AD:DP:GQ:PL    0/1:3,7:10:86.33:222,0,86
3    49463926    rs6762593    A    G    440.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=53.95;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NICN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273598    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:473,36,0
3    49548008    rs2131107    C    G    1421.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8941;MQ=59.52;MQ0=0;QD=29.62;SNPEFF_AMINO_ACID_CHANGE=S14W;SNPEFF_CODON_CHANGE=tCg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49547852_49548252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DAG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308775    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1455,114,0
3    49548294    rs2329024    T    C    488.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=25.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418588    GT:AD:DP:GQ:PL    1/1:0,19:19:39.13:522,39,0
3    49690199    rs4855885    G    A    839.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=T1070;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49688976_49695629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296452    GT:AD:DP:GQ:PL    1/1:0,26:26:66.19:872,66,0
3    49690627    rs35762866    G    A    523.60    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=27;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.139;QD=19.39;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=G1213D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49688976_49695629;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296452    GT:AD:DP:GQ:PL    0/1:8,19:27:99:554,0,192
3    49701298    rs2005557    G    A    864.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=A3863T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49701220_49701319;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296452    GT:AD:DP:GQ:PL    1/1:0,27:27:72.18:897,72,0
3    49713753    rs6778597    T    C    1548.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463616    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1581,123,0
3    49720393    rs2960548    C    G    1340.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.073;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=31.17;ReadPosRankSum=-1.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442186    GT:AD:DP:GQ:PL    1/1:1,41:43:65.68:1373,66,0
3    49723784    rs9713651    C    A    299.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.32;MQ0=1;MQRankSum=1.393;QD=24.98;ReadPosRankSum=-1.044;SNPEFF_AMINO_ACID_CHANGE=P251;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49723495_49723914;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383728    GT:AD:DP:GQ:PL    1/1:3,9:12:2.43:329,2,0
3    49724808    rs3020779    T    C    1958.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.1;MQ0=0;QD=30.6;SNPEFF_AMINO_ACID_CHANGE=P153;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49724797_49724911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449682    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1991,156,0
3    49725432    rs35107568    AG    A    173.77    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=30.5032;IndelType=D;MQ=37.26;MQ0=1;MQRankSum=-0.742;QD=15.8;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296456    GT:AD:DP:GQ:PL    0/1:3,8:8:23.93:213,0,24
3    49725948    rs141881740    C    T    87.23    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9916;MQ=44.24;MQ0=4;MQRankSum=-2.549;QD=4.15;ReadPosRankSum=-1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296456    GT:AD:DP:GQ:PL    0/1:11,10:21:99:117,0,331
3    49726028    rs62262685    T    C    408.08    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.483;DB;DP=44;Dels=0.0;FS=2.843;HRun=0;HaplotypeScore=0.0;MQ=45.23;MQ0=3;MQRankSum=-4.734;QD=9.27;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296456    GT:AD:DP:GQ:PL    0/1:21,23:44:99:438,0,632
3    49726070    rs62262686    G    A    119.10    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.969;DB;DP=44;Dels=0.0;FS=9.506;HRun=0;HaplotypeScore=0.0;MQ=39.86;MQ0=4;MQRankSum=-3.362;QD=2.71;ReadPosRankSum=-2.514;SNPEFF_AMINO_ACID_CHANGE=P19S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49726031_49726486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MST1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449682    GT:AD:DP:GQ:PL    0/1:29,15:44:99:149,0,834
3    49735746    rs11130214    C    G    101.74    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=12.72;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443204    GT:AD:DP:GQ:PL    0/1:3,5:8:99:132,0,107
3    49736172    rs11130216    C    A    270.67    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=19;Dels=0.0;FS=10.62;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.674;QD=14.25;ReadPosRankSum=0.857;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443204    GT:AD:DP:GQ:PL    0/1:10,9:19:99:301,0,352
3    49736565    rs6785549    G    A    654.33    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.877;DB;DP=40;Dels=0.0;FS=1.495;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.646;QD=16.36;ReadPosRankSum=-1.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443204    GT:AD:DP:GQ:PL    0/1:18,22:40:99:684,0,539
3    49737323    rs11130217    A    G    122.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443204    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
3    49738945    rs6804655    C    T    823.94    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.131;DB;DP=57;Dels=0.0;FS=13.237;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.656;QD=14.46;ReadPosRankSum=1.263;SNPEFF_AMINO_ACID_CHANGE=V287;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49738924_49739041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432042    GT:AD:DP:GQ:PL    0/1:29,28:57:99:854,0,874
3    49739086    rs1491986    C    T    283.14    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.342;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.927;QD=16.66;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443204    GT:AD:DP:GQ:PL    0/1:7,10:17:99:313,0,219
3    49739507    rs1491985    G    C    759.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443204    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:793,57,0
3    49744392    rs3749241    A    G    182.48    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=11.4;ReadPosRankSum=0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494005    GT:AD:DP:GQ:PL    0/1:9,7:16:99:212,0,311
3    49750188    rs3749240    T    A    423.18    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.401;DB;DP=22;Dels=0.0;FS=4.2;HRun=0;HaplotypeScore=2.554;MQ=56.78;MQ0=0;MQRankSum=-0.601;QD=19.24;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMIGO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320431    GT:AD:DP:GQ:PL    0/1:9,13:22:99:453,0,278
3    49751585    rs2291542    C    T    324.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.957;DB;DP=40;Dels=0.0;FS=2.917;HRun=0;HaplotypeScore=3.4872;MQ=58.25;MQ0=0;MQRankSum=0.266;QD=8.12;ReadPosRankSum=-0.36;SNPEFF_AMINO_ACID_CHANGE=D108;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49751523_49751607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF123;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433785    GT:AD:DP:GQ:PL    0/1:25,15:40:99:355,0,588
3    49751713    .    C    T    56.89    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=7.11;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMIGO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320431    GT:AD:DP:GQ:PL    0/1:5,3:8:86.88:87,0,159
3    49753003    rs34614773    T    G    356.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.803;DB;DP=25;Dels=0.0;FS=1.674;HRun=1;HaplotypeScore=0.5784;MQ=59.07;MQ0=0;MQRankSum=0.693;QD=14.28;ReadPosRankSum=1.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMIGO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320431    GT:AD:DP:GQ:PL    0/1:10,15:25:99:387,0,276
3    49753788    rs11720705    A    G    2515.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMIGO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320431    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2548,205,0
3    49758764    rs4768    A    G    2464.18    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=4.96;DB;DP=163;DS;Dels=0.0;FS=9.289;HRun=0;HaplotypeScore=3.5884;MQ=59.32;MQ0=0;MQRankSum=0.93;QD=15.12;ReadPosRankSum=1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308388    GT:AD:DP:GQ:PL    0/1:88,75:163:99:2494,0,2681
3    49760039    rs1466685    T    C    1142.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.72;SNPEFF_AMINO_ACID_CHANGE=Q184R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49760029_49760187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPPB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308375    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1175,87,0
3    49765483    rs2307021    C    G    1194.25    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=103;Dels=0.0;FS=6.771;HRun=0;HaplotypeScore=3.6509;MQ=59.55;MQ0=0;MQRankSum=0.342;QD=11.59;ReadPosRankSum=-0.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IP6K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321599    GT:AD:DP:GQ:PL    0/1:54,47:103:99:1224,0,1600
3    49770032    rs3749237    G    A    44.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IP6K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321599    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:74,0,20
3    49785133    rs7374183    G    A    75.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.6;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IP6K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498149    GT:AD:DP:GQ:PL    0/1:3,3:6:90.08:106,0,90
3    49836707    rs7629936    G    A    780.26    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.213;DB;DP=40;Dels=0.0;FS=1.302;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=19.51;ReadPosRankSum=0.78;SNPEFF_AMINO_ACID_CHANGE=A71;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49836680_49836870;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343366    GT:AD:DP:GQ:PL    0/1:14,26:40:99:810,0,387
3    49842270    .    C    CA    617.90    PASS    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=5.289;DP=63;FS=118.095;HRun=1;HaplotypeScore=434.3224;IndelType=I;MQ=44.61;MQ0=0;MQRankSum=-5.021;QD=9.81;ReadPosRankSum=-4.877;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_49841614_49842463;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf54;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000333323    GT:AD:DP:GQ:PL    0/1:51,10:63:99:657,0,762
3    49842881    rs11400401    T    TG    154.16    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=20;FS=0.0;HRun=4;HaplotypeScore=40.548;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=0.515;QD=7.71;ReadPosRankSum=-0.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333323    GT:AD:DP:GQ:PL    0/1:14,6:20:99:193,0,376
3    49846041    rs2234385    G    A    34.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.59;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333323    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:64,0,68
3    49847623    rs1799845    A    G    170.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.398;DB;DP=24;Dels=0.0;FS=1.756;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.582;QD=7.1;ReadPosRankSum=-1.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460516    GT:AD:DP:GQ:PL    0/1:16,8:24:99:200,0,573
3    49849723    rs1799843    G    A    327.24    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.56;QD=14.87;ReadPosRankSum=0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494212    GT:AD:DP:GQ:PL    0/1:10,12:22:99:357,0,342
3    49866392    rs1128535    C    T    314.65    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=14.98;ReadPosRankSum=-0.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469027    GT:AD:DP:GQ:PL    0/1:9,12:21:99:345,0,298
3    49869243    rs116222707    C    T    104.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.63;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475495    GT:AD:DP:GQ:PL    0/1:5,4:9:99:135,0,176
3    49869631    rs13085679    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331456    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
3    49878652    rs1317140    G    A    73.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473863    GT:AD:DP:GQ:PL    0/1:4,4:8:99:103,0,138
3    49881134    rs2246832    A    T    1082.76    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.863;DB;DP=77;Dels=0.0;FS=1.198;HRun=1;HaplotypeScore=0.734;MQ=59.76;MQ0=0;MQRankSum=1.23;QD=14.06;ReadPosRankSum=-0.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473863    GT:AD:DP:GQ:PL    0/1:36,41:77:99:1113,0,1102
3    49884913    rs13316065    C    T    1284.78    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.988;DB;DP=67;Dels=0.0;FS=6.309;HRun=1;HaplotypeScore=0.5784;MQ=58.96;MQ0=0;MQRankSum=0.521;QD=19.18;ReadPosRankSum=-2.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331456    GT:AD:DP:GQ:PL    0/1:26,41:67:99:1315,0,890
3    49894030    rs2276864    T    C    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CAMKV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296471    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
3    49897830    rs2681780    C    T    56.86    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.69;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CAMKV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472895    GT:AD:DP:GQ:PL    0/1:7,3:10:86.86:87,0,251
3    49898000    rs2777888    A    G    185.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.582;DB;DP=20;Dels=0.0;FS=1.74;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=9.28;ReadPosRankSum=-1.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CAMKV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472895    GT:AD:DP:GQ:PL    0/1:12,8:20:99:216,0,428
3    49898273    rs2681781    A    G    1481.53    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.074;DB;DP=107;Dels=0.0;FS=4.965;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.767;QD=13.85;ReadPosRankSum=0.523;SNPEFF_AMINO_ACID_CHANGE=N142;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49898149_49898285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CAMKV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467248    GT:AD:DP:GQ:PL    0/1:56,51:107:99:1512,0,1836
3    49899795    rs3796386    G    A    777.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=49;Dels=0.0;FS=2.643;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.457;QD=15.87;ReadPosRankSum=1.081;SNPEFF_AMINO_ACID_CHANGE=G9;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49899727_49899835;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CAMKV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296471    GT:AD:DP:GQ:PL    0/1:21,28:49:99:808,0,651
3    49924940    rs1062633    T    C    319.30    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=44;Dels=0.0;FS=1.238;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.315;QD=7.26;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=R1286G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49924598_49924995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MST1R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344206    GT:AD:DP:GQ:PL    0/1:30,14:44:99:349,0,970
3    49928691    rs7433231    T    C    1306.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=S1146G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49928630_49928739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MST1R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344206    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1339,105,0
3    49936102    rs2230590    T    C    313.57    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=34;Dels=0.0;FS=14.9;HRun=0;HaplotypeScore=0.7887;MQ=59.32;MQ0=0;MQRankSum=0.682;QD=9.22;ReadPosRankSum=0.018;SNPEFF_AMINO_ACID_CHANGE=Q523R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49935951_49936121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MST1R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296474    GT:AD:DP:GQ:PL    0/1:21,13:34:99:344,0,602
3    49949071    rs868891    A    G    392.22    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.403;DB;DP=43;Dels=0.02;FS=18.939;HRun=2;HaplotypeScore=1.7005;MQ=58.41;MQ0=0;MQRankSum=0.014;QD=8.91;ReadPosRankSum=-0.897;SNPEFF_AMINO_ACID_CHANGE=P175;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_49948959_49949444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417270    GT:AD:DP:GQ:PL    0/1:25,18:43:99:422,0,802
3    49978069    rs6772095    C    T    985.74    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=76;Dels=0.0;FS=2.309;HRun=0;HaplotypeScore=0.0;MQ=58.53;MQ0=0;MQRankSum=0.579;QD=12.97;ReadPosRankSum=1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266022    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1016,0,1109
3    50037123    rs3774733    C    G    78.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.01;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266022    GT:AD:DP:GQ:PL    0/1:3,3:6:85.45:108,0,85
3    50091675    .    G    T    164.79    HaplotypeScoreFilter13    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=34.0532;MQ=45.26;MQ0=0;MQRankSum=-4.165;QD=3.43;ReadPosRankSum=1.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266022    GT:AD:DP:GQ:PL    0/1:18,30:48:99:195,0,220
3    50091679    .    C    T    76.77    HaplotypeScoreFilter13;QDFilter2    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=35.0515;MQ=44.9;MQ0=0;MQRankSum=-2.777;QD=1.57;ReadPosRankSum=1.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266022    GT:AD:DP:GQ:PL    0/1:24,25:49:99:107,0,243
3    50091684    .    A    AT    38.99    QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=2.807;DP=51;FS=0.0;HRun=5;HaplotypeScore=403.8202;IndelType=I;MQ=46.18;MQ0=0;MQRankSum=-3.782;QD=0.76;ReadPosRankSum=-2.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266022    GT:AD:DP:GQ:PL    0/1:45,6:51:78.02:78,0,635
3    50097319    rs2245365    C    A    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425608    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
3    50114515    rs7061    C    T    757.12    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=49;Dels=0.0;FS=1.167;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=15.45;ReadPosRankSum=-0.551;SNPEFF_AMINO_ACID_CHANGE=Y103;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50114441_50114682;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421682    GT:AD:DP:GQ:PL    0/1:23,26:49:99:787,0,663
3    50127706    rs142982401    A    G    43.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347869    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:74,0,34
3    50129374    rs5848907    T    TA    2827.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=1;HaplotypeScore=267.6353;IndelType=I;MQ=59.98;MQ0=0;QD=46.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347869    GT:AD:DP:GQ:PL    1/1:1,60:61:99:2870,181,0
3    50129399    rs2013208    C    T    1313.28    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=71;Dels=0.0;FS=1.014;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=-1.667;QD=18.5;ReadPosRankSum=-1.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347869    GT:AD:DP:GQ:PL    0/1:26,45:71:99:1343,0,779
3    50131459    rs11130241    A    T    49.85    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=5.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437500    GT:AD:DP:GQ:PL    0/1:5,4:9:79.84:80,0,181
3    50144951    rs1061474    T    C    778.20    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.141;DB;DP=47;Dels=0.0;FS=8.9;HRun=1;HaplotypeScore=1.6988;MQ=57.5;MQ0=0;MQRankSum=0.965;QD=16.56;ReadPosRankSum=1.03;SNPEFF_AMINO_ACID_CHANGE=A20;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50144915_50145002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544851    GT:AD:DP:GQ:PL    0/1:19,28:47:99:808,0,612
3    50148305    rs2301166    C    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395174    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:75,0,33
3    50153356    rs1138536    T    C    650.07    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.311;DB;DP=48;Dels=0.0;FS=4.144;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=13.54;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=Y369;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50153339_50153413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544851    GT:AD:DP:GQ:PL    0/1:23,25:48:99:680,0,678
3    50154989    rs2624825    G    A    107.68    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.729;QD=11.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441812    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,161
3    50197097    rs1046953    C    T    587.88    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=0.638;DB;DP=35;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.595;QD=16.8;ReadPosRankSum=-0.213;SNPEFF_AMINO_ACID_CHANGE=T14;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50197008_50197167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000002829    GT:AD:DP:GQ:PL    0/1:13,22:35:99:618,0,385
3    50212512    rs2624833    G    T    31.35    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=2.85;ReadPosRankSum=-0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426511    GT:AD:DP:GQ:PL    0/1:8,3:11:61.34:61,0,230
3    50222926    rs1046956    T    A    166.62    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=20;Dels=0.0;FS=4.868;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=8.33;ReadPosRankSum=1.743;SNPEFF_AMINO_ACID_CHANGE=L404M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50222876_50222964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413852    GT:AD:DP:GQ:PL    0/1:13,7:20:99:197,0,359
3    50223593    rs2073726    T    A    84.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=8.5;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414301    GT:AD:DP:GQ:PL    0/1:6,4:10:99:115,0,193
3    50223977    rs11717349    C    T    454.11    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.118;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.417;QD=15.14;ReadPosRankSum=0.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414301    GT:AD:DP:GQ:PL    0/1:14,16:30:99:484,0,423
3    50224225    rs12632110    A    G    36.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.38;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414301    GT:AD:DP:GQ:PL    0/1:3,2:5:66.91:67,0,106
3    50225029    rs11711407    A    G    64.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=6.45;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414301    GT:AD:DP:GQ:PL    0/1:5,5:10:94.48:94,0,103
3    50251833    rs66535451    A    AG    688.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=43.4154;IndelType=I;MQ=59.93;MQ0=0;QD=36.24;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SLC38A3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000445325    GT:AD:DP:GQ:PL    1/1:3,16:19:51.17:731,51,0
3    50252646    rs76644847    G    T    96.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=16.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SLC38A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427428    GT:AD:DP:GQ:PL    0/1:2,4:6:65.24:127,0,65
3    50255663    rs35926495    C    T    635.69    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.313;DB;DP=33;Dels=0.0;FS=3.362;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.05;QD=19.26;ReadPosRankSum=0.792;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SLC38A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414604    GT:AD:DP:GQ:PL    0/1:13,20:33:99:666,0,321
3    50255666    rs56048629    C    T    674.62    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.32;DB;DP=36;Dels=0.0;FS=1.452;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.243;QD=18.74;ReadPosRankSum=0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SLC38A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414604    GT:AD:DP:GQ:PL    0/1:14,22:36:99:705,0,361
3    50289170    .    G    A    256.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2931;MQ=58.13;MQ0=0;MQRankSum=-0.692;QD=10.26;ReadPosRankSum=0.495;SNPEFF_AMINO_ACID_CHANGE=C22Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50289106_50289175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266027    GT:AD:DP:GQ:PL    0/1:12,12:25:99:286,0,301
3    50308718    rs4688739    A    G    190.17    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.34;QD=12.68;ReadPosRankSum=1.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEMA3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316347    GT:AD:DP:GQ:PL    0/1:7,8:15:99:220,0,235
3    50332697    rs13100173    G    A    1065.33    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.668;DB;DP=80;Dels=0.0;FS=6.011;HRun=0;HaplotypeScore=2.5422;MQ=59.42;MQ0=0;MQRankSum=-0.576;QD=13.32;ReadPosRankSum=0.229;SNPEFF_AMINO_ACID_CHANGE=H113Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50332140_50333050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYAL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336307    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1095,0,1165
3    50338388    .    A    C    61.34    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DP=12;Dels=0.0;FS=3.68;HRun=5;HaplotypeScore=2.7295;MQ=44.62;MQ0=0;MQRankSum=-1.788;QD=5.11;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418723    GT:AD:DP:GQ:PL    0/1:7,5:12:91.33:91,0,121
3    50356290    .    G    A    296.82    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.449;QD=15.62;ReadPosRankSum=-1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415028    GT:AD:DP:GQ:PL    0/1:9,10:19:99:327,0,296
3    50357869    rs709210    A    C    169.06    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=18.78;ReadPosRankSum=-0.762;SNPEFF_AMINO_ACID_CHANGE=S18A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50357000_50357966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYAL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357750    GT:AD:DP:GQ:PL    0/1:2,7:9:46.69:199,0,47
3    50597092    rs1034405    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_AMINO_ACID_CHANGE=A110V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50596956_50597168;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422619    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    50609123    rs636168    T    C    3882.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.8;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232854    GT:AD:DP:GQ:PL    1/1:0,113:114:99:3883,286,0
3    50609624    rs2232248    T    G    495.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=P133;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_50609546_50609639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEMK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000232854    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:529,39,0
3    50615539    rs388483    G    A    39.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424388    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:69,0,34
3    50645635    rs621975    T    G    580.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=32.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CISH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348721    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:614,45,0
3    50645793    rs77555465    C    G    372.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CISH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348721    GT:AD:DP:GQ:PL    1/1:0,15:15:30.10:405,30,0
3    50649370    rs6768300    C    G    52.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPKAPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486712    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
3    50678001    rs608961    C    T    1665.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.01;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPKAPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457064    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1698,126,0
3    50678151    rs4267639    C    T    122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPKAPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457064    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
3    50683809    rs876105    T    C    448.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPKAPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357955    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:482,39,0
3    50683977    rs876104    A    G    93.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPKAPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357955    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:126,9,0
3    50684011    rs876103    G    A    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPKAPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357955    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
3    50685642    rs9879397    A    G    129.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPKAPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430409    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
3    50915158    rs4511895    G    A    75.15    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.79;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    0/1:1,3:4:20.46:105,0,20
3    51112709    .    T    G    173.72    PASS    AB=0.194;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=10.9993;MQ=53.95;MQ0=0;MQRankSum=0.531;QD=4.83;ReadPosRankSum=1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    0/1:7,29:36:52.37:204,0,52
3    51246360    rs4301044    A    G    1604.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1638,123,0
3    51264475    rs922612    A    G    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
3    51273711    rs1480362    A    G    1446.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=58.2;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1480,114,0
3    51273773    rs1480361    T    C    2816.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=59.48;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2850,217,0
3    51273992    rs2291162    C    G    378.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=37.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:412,30,0
3    51274721    rs7634799    T    A    156.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=17.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,9:9:15.05:189,15,0
3    51274902    rs11386090    T    TA    2601.77    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.057;DB;DP=143;FS=1.42;HRun=1;HaplotypeScore=356.9826;IndelType=I;MQ=59.91;MQ0=0;MQRankSum=0.137;QD=18.19;ReadPosRankSum=-0.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    0/1:73,70:143:99:2641,0,2227
3    51393706    rs35251332    C    CAG    4463.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.0;HRun=0;HaplotypeScore=184.9645;IndelType=I;MQ=60.81;MQ0=0;QD=59.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,74:75:99:4463,226,0
3    51395571    rs1542574    C    T    1881.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1915,144,0
3    51418348    rs2241784    G    A    1213.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=58.59;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,33:33:96.30:1246,96,0
3    51422766    rs13091931    G    T    33.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=16.87;SNPEFF_AMINO_ACID_CHANGE=R1M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_51422703_51422867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273628    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
3    51426111    .    A    G    30.90    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
3    51430330    rs79092917    G    A    1028.61    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=65;Dels=0.0;FS=0.938;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.493;QD=15.82;ReadPosRankSum=-0.256;SNPEFF_AMINO_ACID_CHANGE=Q173;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_51429569_51431933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM15B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541145    GT:AD:DP:GQ:PL    0/1:31,34:65:99:1059,0,866
3    51440496    .    G    T    215.54    HaplotypeScoreFilter13    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DP=45;Dels=0.0;FS=6.368;HRun=2;HaplotypeScore=15.8175;MQ=46.8;MQ0=0;MQRankSum=-2.087;QD=4.79;ReadPosRankSum=2.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335891    GT:AD:DP:GQ:PL    0/1:12,33:45:99:246,0,158
3    51460010    rs62257541    G    A    198.10    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.3;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335891    GT:AD:DP:GQ:PL    0/1:1,6:7:10.48:228,0,10
3    51477627    rs7634991    C    T    65.17    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=3.1438;MQ=57.87;MQ0=0;MQRankSum=0.633;QD=5.92;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335891    GT:AD:DP:GQ:PL    0/1:6,5:11:95.16:95,0,165
3    51517625    rs72112939    T    TTG    441.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=189.103;IndelType=I;MQ=43.07;MQ0=0;MQRankSum=-1.349;QD=17.67;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335891    GT:AD:DP:GQ:PL    1/1:15,5:25:18.73:484,19,0
3    51697493    rs904145    A    G    407.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RAD54L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296477    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:441,36,0
3    51708144    rs73080631    G    T    31.41    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=3.93;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX264;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341333    GT:AD:DP:GQ:PL    0/1:6,2:8:61.40:61,0,166
3    51812952    rs11130296    C    T    1157.48    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.786;DB;DP=95;Dels=0.0;FS=2.744;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.133;QD=12.18;ReadPosRankSum=-0.485;SNPEFF_AMINO_ACID_CHANGE=R4Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_51812580_51813009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398780    GT:AD:DP:GQ:PL    0/1:50,45:95:99:1187,0,1432
3    51895693    rs114750576    G    A    331.33    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.514;DB;DP=21;Dels=0.0;FS=7.025;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.303;QD=15.78;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=R4Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_51895654_51895700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IQCF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333127    GT:AD:DP:GQ:PL    0/1:10,11:21:99:361,0,271
3    51895850    rs986539    C    T    1154.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535733    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1188,87,0
3    51907736    rs7635409    A    G    1670.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=32.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398778    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1703,126,0
3    51908226    rs1505403    T    C    752.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535733    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:786,60,0
3    51908430    rs6794320    T    C    416.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535733    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:450,36,0
3    51929360    rs111348188    GA    G    537.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=7;HaplotypeScore=83.24;IndelType=D;MQ=59.35;MQ0=0;QD=25.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310914    GT:AD:DP:GQ:PL    1/1:1,20:21:57.13:579,57,0
3    51936949    rs7635125    T    C    5194.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=59.84;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310914    GT:AD:DP:GQ:PL    1/1:0,144:145:99:5194,388,0
3    51975577    rs929533    C    T    466.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.226;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.509;QD=16.68;ReadPosRankSum=-1.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232888    GT:AD:DP:GQ:PL    0/1:12,16:28:99:497,0,367
3    51978220    rs28547534    A    G    5908.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=189;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9707;MQ=59.54;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=H100R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_51978105_51978233;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417220    GT:AD:DP:GQ:PL    1/1:1,188:189:99:5909,451,0
3    51978640    rs4687792    G    A    610.67    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6517;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=9.39;ReadPosRankSum=-0.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398755    GT:AD:DP:GQ:PL    0/1:42,23:65:99:641,0,1361
3    51981605    rs137993941    G    T    67.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470601    GT:AD:DP:GQ:PL    0/1:2,3:5:53.34:98,0,53
3    51990315    rs28651222    A    G    83.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_AMINO_ACID_CHANGE=H216R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_51989330_51991509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322241    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
3    52236762    rs352169    G    A    127.61    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.318;QD=7.51;ReadPosRankSum=-0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310271    GT:AD:DP:GQ:PL    0/1:12,5:17:99:158,0,379
3    52237970    rs352168    C    T    793.87    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.299;DB;DP=64;Dels=0.0;FS=9.332;HRun=1;HaplotypeScore=1.7465;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=12.4;ReadPosRankSum=0.368;SNPEFF_AMINO_ACID_CHANGE=I173;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52237879_52238028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310271    GT:AD:DP:GQ:PL    0/1:37,27:64:99:824,0,1187
3    52238656    rs352167    T    C    169.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=9.98;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310271    GT:AD:DP:GQ:PL    0/1:10,6:17:99:200,0,353
3    52238677    rs352166    C    T    231.45    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=23;Dels=0.0;FS=4.075;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=10.06;ReadPosRankSum=0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310271    GT:AD:DP:GQ:PL    0/1:14,9:23:99:261,0,509
3    52256697    rs352140    C    T    403.26    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.938;QD=13.91;ReadPosRankSum=1.331;SNPEFF_AMINO_ACID_CHANGE=P545;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52255096_52258328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360658    GT:AD:DP:GQ:PL    0/1:15,14:29:99:433,0,365
3    52268866    rs353547    T    C    155.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=19.46;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TWF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305533    GT:AD:DP:GQ:PL    0/1:3,5:8:98.44:186,0,98
3    52325759    rs2276834    A    G    315.53    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.402;QD=10.18;ReadPosRankSum=-1.545;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYCTK;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000486393    GT:AD:DP:GQ:PL    0/1:18,13:31:99:346,0,601
3    52392389    rs116084959    G    C    33.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497875    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
3    52407041    rs1546737    C    T    653.68    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=4.493;DB;DP=41;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.662;QD=15.94;ReadPosRankSum=0.099;SNPEFF_AMINO_ACID_CHANGE=H2319;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52406912_52407069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420323    GT:AD:DP:GQ:PL    0/1:19,22:41:99:684,0,479
3    52407339    rs142472916    C    T    51.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5577;MQ=53.03;MQ0=0;MQRankSum=-1.537;QD=7.33;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420323    GT:AD:DP:GQ:PL    0/1:3,3:7:81.32:81,0,88
3    52415865    rs770284    A    G    153.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420323    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
3    52430698    rs365048    A    G    2832.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.75;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=H3832R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52430634_52430813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNAH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420323    GT:AD:DP:GQ:PL    1/1:0,94:94:99:2866,226,0
3    52442670    rs143273211    A    C    53.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=10.69;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296288    GT:AD:DP:GQ:PL    0/1:2,3:5:66.21:83,0,66
3    52453893    rs498778    C    T    777.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=G42;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52453849_52453893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454052    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:811,63,0
3    52456973    rs2272088    A    G    435.22    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.25;MQ0=0;MQRankSum=-0.207;QD=14.04;ReadPosRankSum=-0.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459935    GT:AD:DP:GQ:PL    0/1:15,16:31:99:465,0,508
3    52469628    rs61729091    C    T    886.19    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=58;Dels=0.0;FS=7.398;HRun=1;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;MQRankSum=0.088;QD=15.28;ReadPosRankSum=1.397;SNPEFF_AMINO_ACID_CHANGE=E780;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52467069_52470089;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231721    GT:AD:DP:GQ:PL    0/1:28,30:58:99:916,0,822
3    52471942    rs82825    G    A    437.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475739    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:470,36,0
3    52473728    .    C    T    554.75    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.563;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.42;MQ0=0;MQRankSum=0.693;QD=13.87;ReadPosRankSum=0.612;SNPEFF_AMINO_ACID_CHANGE=E479K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52473696_52473787;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231721    GT:AD:DP:GQ:PL    0/1:18,22:40:99:585,0,535
3    52476246    rs34900551    G    A    109.55    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.101;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.553;QD=4.76;ReadPosRankSum=-1.29;SNPEFF_AMINO_ACID_CHANGE=A138;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52476201_52476320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231721    GT:AD:DP:GQ:PL    0/1:16,6:23:99:140,0,509
3    52492085    rs4687614    G    A    700.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345716    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:734,57,0
3    52492707    rs1541495    T    C    1628.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=N69;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52492678_52492860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345716    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1661,123,0
3    52505758    rs3065763    G    GAT    319.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=16.6174;IndelType=I;MQ=61.78;MQ0=0;QD=53.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345716    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:361,18,0
3    52506282    rs4312651    A    G    1224.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.74;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345716    GT:AD:DP:GQ:PL    1/1:0,37:37:93.29:1257,93,0
3    52506426    rs6784615    C    T    1108.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=35.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488157    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1142,84,0
3    52506491    rs6445486    A    G    577.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7254;MQ=56.04;MQ0=0;QD=32.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488157    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:611,45,0
3    52507719    rs13094915    G    C    1181.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488157    GT:AD:DP:GQ:PL    1/1:0,34:34:87.29:1214,87,0
3    52510592    rs9856575    G    A    854.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_AMINO_ACID_CHANGE=V299I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52510463_52510615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345716    GT:AD:DP:GQ:PL    1/1:0,29:29:66.21:888,66,0
3    52510697    rs7620015    G    A    275.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488157    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
3    52512318    rs2109559    A    G    1888.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.78;MQ0=0;QD=33.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481211    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1921,144,0
3    52513898    rs41292364    G    C    179.47    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.507;DB;DP=22;Dels=0.0;FS=2.304;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=0.193;QD=8.16;ReadPosRankSum=-0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464280    GT:AD:DP:GQ:PL    0/1:9,13:22:99:209,0,236
3    52513940    rs4687618    T    C    165.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464280    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:199,18,0
3    52518786    rs4687619    T    C    153.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420808    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:186,15,0
3    52522659    rs887514    T    C    110.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460759    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:143,12,0
3    52523405    rs887515    C    T    733.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=A1056V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52523352_52523694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345716    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:766,57,0
3    52524480    rs6445497    A    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460759    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    52524574    rs6810027    C    A    247.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460759    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
3    52524974    rs4687621    A    C    501.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NISCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460759    GT:AD:DP:GQ:PL    1/1:0,15:15:45.11:534,45,0
3    52536308    rs758801    A    C    144.80    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=18.1;ReadPosRankSum=-0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479355    GT:AD:DP:GQ:PL    0/1:3,5:8:85.51:175,0,86
3    52537969    rs4687545    T    C    558.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479355    GT:AD:DP:GQ:PL    1/1:0,21:21:45.14:592,45,0
3    52544470    rs9835659    A    G    727.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_AMINO_ACID_CHANGE=M912V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52544365_52544523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    1/1:0,20:20:60.16:761,60,0
3    52546116    rs758802    C    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481607    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
3    52546487    rs7644763    C    T    863.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481607    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:896,69,0
3    52546820    rs2015971    C    T    1142.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481607    GT:AD:DP:GQ:PL    1/1:0,34:34:90.27:1175,90,0
3    52551265    rs66824127    T    C    522.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:556,42,0
3    52551284    rs67409736    G    T    703.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:737,57,0
3    52552916    .    A    G    34.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=5.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    0/1:4,2:6:64.17:64,0,100
3    52553625    rs112646045    TGTAA    T    1591.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=159.4355;IndelType=D;MQ=53.18;MQ0=0;QD=53.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307076    GT:AD:DP:GQ:PL    1/1:1,29:30:87.30:1633,87,0
3    52554304    rs7630214    G    C    2061.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=29.04;SNPEFF_AMINO_ACID_CHANGE=A1833P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52554220_52554306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2095,169,0
3    52555316    rs13081028    G    A    569.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8499;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307076    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:603,45,0
3    52555957    rs9853056    T    C    341.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.24;SNPEFF_AMINO_ACID_CHANGE=R2087;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52555860_52555967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:374,33,0
3    52556890    rs4434138    A    G    1574.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.752;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7129;MQ=58.84;MQ0=0;MQRankSum=1.079;QD=28.12;ReadPosRankSum=-1.471;SNPEFF_AMINO_ACID_CHANGE=I2282V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52556791_52556956;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1608,100,0
3    52557038    rs4234633    C    T    1924.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=58.39;MQ0=0;MQRankSum=1.434;QD=31.55;ReadPosRankSum=-0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307076    GT:AD:DP:GQ:PL    1/1:1,60:61:99:1958,156,0
3    52558008    rs13303    T    C    838.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.13;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=M2506T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52557887_52558033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:872,66,0
3    52558133    rs13621    T    C    2139.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=30.13;SNPEFF_AMINO_ACID_CHANGE=D2520;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52558116_52558229;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321725    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2172,171,0
3    52558904    rs34005367    A    T    690.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471522    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:724,54,0
3    52561779    rs11711421    C    T    1411.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.42;MQ0=0;QD=35.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471522    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1445,108,0
3    52568805    rs7639267    G    T    675.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C3orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482728    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:709,54,0
3    52584431    rs34372721    T    TCTC    702.21    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.093;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=79.934;IndelType=I;MQ=59.53;MQ0=0;MQRankSum=0.523;QD=27.01;ReadPosRankSum=-0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423351    GT:AD:DP:GQ:PL    0/1:14,12:26:99:741,0,475
3    52584715    rs2878628    A    G    650.08    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=31;Dels=0.0;FS=1.895;HRun=2;HaplotypeScore=1.3123;MQ=59.25;MQ0=0;MQRankSum=-0.069;QD=20.97;ReadPosRankSum=-0.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423351    GT:AD:DP:GQ:PL    0/1:11,19:31:99:680,0,287
3    52584787    rs2251219    T    C    603.99    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.844;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.42;MQ0=0;MQRankSum=1.229;QD=15.1;ReadPosRankSum=-0.14;SNPEFF_AMINO_ACID_CHANGE=P1445;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52584763_52584833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337303    GT:AD:DP:GQ:PL    0/1:15,25:40:99:634,0,393
3    52597664    rs2289249    G    A    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C3orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476842    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,113
3    52610415    rs7652191    T    C    304.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=25.35;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C3orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476842    GT:AD:DP:GQ:PL    0/1:3,9:12:87.60:334,0,88
3    52610651    rs17264436    T    A    741.36    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.64;DB;DP=59;Dels=0.0;FS=3.737;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.1;QD=12.57;ReadPosRankSum=-0.147;SNPEFF_AMINO_ACID_CHANGE=P1167;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52610557_52610714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356770    GT:AD:DP:GQ:PL    0/1:35,24:59:99:771,0,1134
3    52637486    rs2276824    C    G    427.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=25;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.915;QD=17.11;ReadPosRankSum=0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296302    GT:AD:DP:GQ:PL    0/1:10,15:25:99:458,0,310
3    52643307    rs3733045    A    G    617.60    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.397;DB;DP=33;Dels=0.0;FS=5.089;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=18.72;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296302    GT:AD:DP:GQ:PL    0/1:12,21:33:99:648,0,364
3    52643685    rs3755806    T    C    1115.24    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.066;DB;DP=56;Dels=0.0;FS=7.829;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.575;QD=19.92;ReadPosRankSum=0.779;SNPEFF_AMINO_ACID_CHANGE=T696;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52643329_52643971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446103    GT:AD:DP:GQ:PL    0/1:21,35:56:99:1145,0,624
3    52676065    rs11719685    C    T    1114.25    HaplotypeScoreFilter13    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=139;Dels=0.03;FS=9.166;HRun=0;HaplotypeScore=28.5824;MQ=57.26;MQ0=0;MQRankSum=0.713;QD=7.74;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296302    GT:AD:DP:GQ:PL    0/1:72,57:139:99:1144,0,1310
3    52676190    rs11130313    A    C    63.31    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.122;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.152;QD=3.96;ReadPosRankSum=-0.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296302    GT:AD:DP:GQ:PL    0/1:12,4:16:93.30:93,0,427
3    52682205    rs34757451    G    A    140.27    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=6.532;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=15.59;ReadPosRankSum=-0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431678    GT:AD:DP:GQ:PL    0/1:2,7:9:58.83:170,0,59
3    52692124    rs2336149    G    A    381.58    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=35;Dels=0.0;FS=2.846;HRun=2;HaplotypeScore=0.9987;MQ=59.34;MQ0=0;MQRankSum=0.427;QD=10.9;ReadPosRankSum=-0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420148    GT:AD:DP:GQ:PL    0/1:22,13:35:99:412,0,776
3    52692359    rs2590846    C    G    229.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=19.1;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420148    GT:AD:DP:GQ:PL    0/1:3,9:12:96.74:259,0,97
3    52720080    rs1108842    A    C    143.55    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.718;QD=9.57;ReadPosRankSum=0.583;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_52720032_52720218;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394799    GT:AD:DP:GQ:PL    0/1:8,7:15:99:174,0,199
3    52721305    rs11177    G    A    592.73    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=3.152;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3667;MQ=60.0;MQ0=0;MQRankSum=1.25;QD=11.4;ReadPosRankSum=0.746;SNPEFF_AMINO_ACID_CHANGE=R27Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52721262_52721399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394799    GT:AD:DP:GQ:PL    0/1:31,21:52:99:623,0,957
3    52722266    rs33998548    AT    A    222.52    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.845;DB;DP=20;FS=0.0;HRun=10;HaplotypeScore=60.0115;IndelType=D;MQ=59.39;MQ0=0;MQRankSum=-0.896;QD=11.13;ReadPosRankSum=2.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460073    GT:AD:DP:GQ:PL    0/1:7,13:20:99:262,0,110
3    52725771    rs35315313    G    T    69.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.15;MQ0=0;MQRankSum=0.0;QD=9.95;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266014    GT:AD:DP:GQ:PL    0/1:3,4:7:69.72:100,0,70
3    52726695    rs6762813    C    T    361.02    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.007;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.686;QD=12.45;ReadPosRankSum=0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266014    GT:AD:DP:GQ:PL    0/1:17,12:29:99:391,0,625
3    52727257    rs2289247    G    A    1296.40    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=91;Dels=0.0;FS=1.97;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.607;QD=14.25;ReadPosRankSum=-0.335;SNPEFF_AMINO_ACID_CHANGE=V355M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52727203_52727345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394799    GT:AD:DP:GQ:PL    0/1:45,46:91:99:1326,0,1427
3    52728312    rs34699584    A    AT    203.95    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=17;FS=0.0;HRun=10;HaplotypeScore=48.362;IndelType=I;MQ=53.32;MQ0=1;MQRankSum=-0.295;QD=10.73;ReadPosRankSum=0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266014    GT:AD:DP:GQ:PL    0/1:9,9:17:99:243,0,102
3    52728804    rs6976    C    T    548.78    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.553;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.553;QD=24.94;ReadPosRankSum=-0.405;SNPEFF_AMINO_ACID_CHANGE=V221M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52728784_52728945;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394786    GT:AD:DP:GQ:PL    0/1:6,16:22:99:579,0,180
3    52730184    .    T    C    262.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.45;MQ0=0;MQRankSum=0.865;QD=17.52;ReadPosRankSum=0.865;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464705    GT:AD:DP:GQ:PL    0/1:6,9:15:99:293,0,190
3    52731598    rs3733041    T    C    144.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.05;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464705    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,138
3    52741581    rs34636695    AT    A    144.29    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.134;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=55.0801;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.669;QD=6.87;ReadPosRankSum=2.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233027    GT:AD:DP:GQ:PL    0/1:11,10:21:99:183,0,289
3    52771468    rs6445535    T    C    57.53    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=4.79;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383721    GT:AD:DP:GQ:PL    0/1:9,3:12:87.52:88,0,329
3    52778051    rs2286800    C    T    179.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=17.91;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233027    GT:AD:DP:GQ:PL    0/1:4,6:10:99:209,0,138
3    52778347    rs2268026    T    C    1127.17    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.963;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.78;QD=14.27;ReadPosRankSum=1.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233027    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1157,0,1343
3    52797634    rs1029871    G    C    1077.01    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=93;Dels=0.0;FS=14.803;HRun=0;HaplotypeScore=1.5317;MQ=59.05;MQ0=0;MQRankSum=1.195;QD=11.58;ReadPosRankSum=0.355;SNPEFF_AMINO_ACID_CHANGE=P136A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52797486_52797640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461689    GT:AD:DP:GQ:PL    0/1:56,36:93:99:1107,0,1751
3    52800284    rs2230535    T    C    443.83    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=10.32;ReadPosRankSum=-1.297;SNPEFF_AMINO_ACID_CHANGE=L156;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52800194_52800391;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233027    GT:AD:DP:GQ:PL    0/1:22,21:43:99:474,0,690
3    52802402    rs2230534    A    C    2229.57    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.933;DB;DP=147;Dels=0.0;FS=1.376;HRun=1;HaplotypeScore=0.9578;MQ=59.87;MQ0=0;MQRankSum=-0.561;QD=15.17;ReadPosRankSum=0.728;SNPEFF_AMINO_ACID_CHANGE=P104;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52802354_52802620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233027    GT:AD:DP:GQ:PL    0/1:68,79:147:99:2260,0,2243
3    52814256    rs2302417    T    A    117.60    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.678;QD=10.69;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273283    GT:AD:DP:GQ:PL    0/1:4,7:11:99:148,0,135
3    52815905    rs2710323    T    C    543.81    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.69;MQ0=0;MQRankSum=0.167;QD=16.99;ReadPosRankSum=0.795;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480409    GT:AD:DP:GQ:PL    0/1:13,18:32:99:574,0,407
3    52818579    rs2239551    G    A    67.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.25;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478667    GT:AD:DP:GQ:PL    0/1:3,3:6:97.50:98,0,107
3    52819327    rs2268023    T    A    140.93    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.05;QD=8.29;ReadPosRankSum=-2.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478667    GT:AD:DP:GQ:PL    0/1:11,6:17:99:171,0,367
3    52820855    rs36051478    CGAAT    C    178.49    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=41.6479;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=22.31;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478667    GT:AD:DP:GQ:PL    0/1:3,5:8:99:218,0,193
3    52820981    rs678    A    T    188.88    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.694;QD=9.44;ReadPosRankSum=0.531;SNPEFF_AMINO_ACID_CHANGE=E138V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52820961_52821130;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428133    GT:AD:DP:GQ:PL    0/1:11,9:20:99:219,0,340
3    52821011    rs1042779    A    G    365.65    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DB;DP=26;Dels=0.0;FS=3.682;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.259;QD=14.06;ReadPosRankSum=-0.623;SNPEFF_AMINO_ACID_CHANGE=Q148R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52820961_52821130;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428133    GT:AD:DP:GQ:PL    0/1:11,15:26:99:396,0,319
3    52821177    rs2286798    A    C    1019.87    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.707;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;MQRankSum=-0.993;QD=10.85;ReadPosRankSum=-0.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478667    GT:AD:DP:GQ:PL    0/1:57,37:94:99:1050,0,1726
3    52821992    rs68094128    CT    C    1740.67    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=5.11;DB;DP=107;FS=1.567;HRun=1;HaplotypeScore=273.7053;IndelType=D;MQ=60.4;MQ0=0;MQRankSum=0.231;QD=16.27;ReadPosRankSum=0.402;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_52821841_52822082;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000405128    GT:AD:DP:GQ:PL    0/1:57,50:107:99:1780,0,2112
3    52824610    rs6778329    G    A    56.47    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.652;QD=6.27;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482836    GT:AD:DP:GQ:PL    0/1:5,4:9:86.47:86,0,177
3    52825462    rs1076425    A    G    119.09    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=1.699;QD=7.44;ReadPosRankSum=-0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482836    GT:AD:DP:GQ:PL    0/1:11,5:16:99:149,0,346
3    52825528    rs1075653    T    C    308.92    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=1.181;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=6.86;ReadPosRankSum=-0.525;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482836    GT:AD:DP:GQ:PL    0/1:29,16:45:99:339,0,900
3    52825585    rs9324    T    C    636.60    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=68;Dels=0.0;FS=2.018;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.546;QD=9.36;ReadPosRankSum=-0.124;SNPEFF_AMINO_ACID_CHANGE=S215;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52825533_52825644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405128    GT:AD:DP:GQ:PL    0/1:39,29:68:99:667,0,1093
3    52828628    rs9881468    C    T    112.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.73;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273283    GT:AD:DP:GQ:PL    0/1:2,4:6:65.46:142,0,65
3    52829607    rs56009954    T    C    74.04    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=6.73;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273283    GT:AD:DP:GQ:PL    0/1:6,5:11:99:104,0,188
3    52831009    rs2240920    C    T    100.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=16.78;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273283    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:131,0,67
3    52831701    rs2240919    C    G    199.12    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.58;QD=19.91;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITIH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467268    GT:AD:DP:GQ:PL    0/1:3,7:10:84.01:229,0,84
3    52833219    rs2535629    G    A    375.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.76;DB;DP=25;Dels=0.0;FS=17.194;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-1.085;QD=15.01;ReadPosRankSum=-0.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITIH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467268    GT:AD:DP:GQ:PL    0/1:10,15:25:99:405,0,349
3    52833805    rs3617    C    A    555.30    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.957;DB;DP=46;Dels=0.0;FS=1.21;HRun=2;HaplotypeScore=2.2566;MQ=60.0;MQ0=0;MQRankSum=2.298;QD=12.07;ReadPosRankSum=-1.484;SNPEFF_AMINO_ACID_CHANGE=Q303K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52833769_52833937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITIH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536431    GT:AD:DP:GQ:PL    0/1:22,24:46:99:585,0,652
3    52837793    rs4481150    T    C    102.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.6;QD=8.5;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITIH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463893    GT:AD:DP:GQ:PL    0/1:8,4:12:99:132,0,264
3    52837855    rs2710331    T    C    152.38    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.434;DB;DP=23;Dels=0.0;FS=1.824;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.367;QD=6.63;ReadPosRankSum=-0.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITIH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463893    GT:AD:DP:GQ:PL    0/1:16,7:23:99:182,0,512
3    52847601    rs2071044    C    T    232.24    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.652;QD=15.48;ReadPosRankSum=0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITIH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273291    GT:AD:DP:GQ:PL    0/1:7,8:15:99:262,0,237
3    52851137    rs2240917    T    C    223.44    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.129;DB;DP=24;Dels=0.0;FS=7.499;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=9.31;ReadPosRankSum=-1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434759    GT:AD:DP:GQ:PL    0/1:13,11:24:99:253,0,444
3    52852060    rs2245538    T    C    340.86    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.195;DB;DP=29;Dels=0.0;FS=6.219;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.366;QD=11.75;ReadPosRankSum=0.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434759    GT:AD:DP:GQ:PL    0/1:15,13:29:99:371,0,429
3    52853340    rs7620907    G    C    525.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434759    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:559,45,0
3    52853401    rs3821831    C    T    430.77    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.611;DB;DP=27;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.024;QD=15.95;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434759    GT:AD:DP:GQ:PL    0/1:12,15:27:99:461,0,413
3    52853747    rs2276815    C    G    1560.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.681;DB;DP=153;Dels=0.0;FS=0.629;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.46;QD=10.2;ReadPosRankSum=0.396;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467462    GT:AD:DP:GQ:PL    0/1:85,68:153:99:1591,0,2658
3    52854186    rs2239548    A    C    337.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.664;DB;DP=24;Dels=0.0;FS=6.111;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.779;QD=14.05;ReadPosRankSum=0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467462    GT:AD:DP:GQ:PL    0/1:12,12:24:99:367,0,389
3    52855229    rs2239547    T    C    121.70    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.41;ReadPosRankSum=2.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483372    GT:AD:DP:GQ:PL    0/1:14,5:19:99:152,0,481
3    52860816    rs2276816    C    T    272.75    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.821;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.288;QD=14.36;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=K158;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52860807_52860872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538421    GT:AD:DP:GQ:PL    0/1:9,10:19:99:303,0,276
3    52860936    rs2276817    C    T    403.45    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=54;Dels=0.0;FS=1.077;HRun=0;HaplotypeScore=2.5612;MQ=59.57;MQ0=0;MQRankSum=-0.489;QD=7.47;ReadPosRankSum=-1.54;SNPEFF_AMINO_ACID_CHANGE=V130;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52860807_52860969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266041    GT:AD:DP:GQ:PL    0/1:35,19:54:99:433,0,963
3    52861211    rs13072536    A    T    624.17    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.019;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.16;MQ0=0;MQRankSum=1.343;QD=12.48;ReadPosRankSum=0.701;SNPEFF_AMINO_ACID_CHANGE=I85N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52861109_52861213;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266041    GT:AD:DP:GQ:PL    0/1:27,23:50:99:654,0,750
3    52864584    rs2071042    A    G    1150.93    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.361;DB;DP=86;Dels=0.0;FS=4.075;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.186;QD=13.38;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=T25;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52864569_52864755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266041    GT:AD:DP:GQ:PL    0/1:42,44:86:99:1181,0,1301
3    52864693    rs2071041    T    G    436.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.581;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.583;MQ=58.31;MQ0=0;MQRankSum=-0.804;QD=17.46;ReadPosRankSum=-0.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446157    GT:AD:DP:GQ:PL    0/1:10,15:25:99:466,0,338
3    52867288    rs4687661    A    T    463.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355083    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:497,39,0
3    52867595    rs60332615    C    A    437.44    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.564;DB;DP=28;Dels=0.0;FS=9.167;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.411;QD=15.62;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355083    GT:AD:DP:GQ:PL    0/1:11,17:28:99:467,0,376
3    52867715    rs6787916    G    C    975.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_AMINO_ACID_CHANGE=D20E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_52867633_52867765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUSTN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446157    GT:AD:DP:GQ:PL    1/1:0,32:33:75.24:1008,75,0
3    52867811    rs6776876    A    T    777.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355083    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:811,60,0
3    52874288    rs6445538    T    C    69.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=11.62;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464769    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,107
3    52874446    rs6769789    C    T    340.48    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.176;QD=16.21;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    0/1:10,11:21:99:370,0,322
3    52874753    rs56019197    T    C    110.10    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.52;MQ0=0;MQRankSum=0.597;QD=9.18;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    0/1:8,4:12:99:140,0,130
3    52874779    rs7638431    G    A    287.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:321,24,0
3    52876639    rs12638195    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    52876716    rs6776990    C    T    461.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:495,39,0
3    52877647    rs113275920    C    CA    2299    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=1;HaplotypeScore=436.137;IndelType=I;MQ=59.75;MQ0=0;QD=39.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    1/1:0,58:57:99:2341,171,0
3    52877720    rs4687668    T    C    3584.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.21;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3584,268,0
3    52878721    rs7650966    G    C    127.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
3    52878746    rs10663469    C    CAG    479.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=72.7859;IndelType=I;MQ=58.77;MQ0=0;QD=47.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:522,27,0
3    52878825    rs7629528    C    A    772.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110-MUSTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504329    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:805,60,0
3    52886406    rs2246889    T    C    164.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467979    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
3    52886411    rs2246888    A    C    157.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467979    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
3    52886605    rs2276825    T    C    1370.34    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.276;DB;DP=90;Dels=0.0;FS=0.807;HRun=0;HaplotypeScore=1.9996;MQ=58.76;MQ0=0;MQRankSum=0.877;QD=15.23;ReadPosRankSum=-0.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467979    GT:AD:DP:GQ:PL    0/1:42,48:90:99:1400,0,1218
3    52960013    rs11360013    GC    G    1555.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=2;HaplotypeScore=115.2521;IndelType=D;MQ=60.26;MQ0=0;QD=37.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296295    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1598,123,0
3    52968726    rs2257216    T    C    62    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=6.2;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296295    GT:AD:DP:GQ:PL    0/1:7,3:10:92:92,0,253
3    52968801    rs2710315    T    C    664.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296295    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:698,54,0
3    53003021    rs2245424    G    C    2543.17    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=150;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9965;MQ=59.54;MQ0=0;MQRankSum=0.549;QD=16.95;ReadPosRankSum=-1.148;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474837    GT:AD:DP:GQ:PL    0/1:66,84:150:99:2573,0,1980
3    53125922    rs11242    T    C    268.43    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.906;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.35;QD=6.55;ReadPosRankSum=-1.172;SNPEFF_AMINO_ACID_CHANGE=T502;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53125681_53126086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394738    GT:AD:DP:GQ:PL    0/1:27,14:41:99:298,0,829
3    53126143    rs2581786    G    A    193.08    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-1.447;QD=12.87;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296292    GT:AD:DP:GQ:PL    0/1:8,7:15:99:223,0,245
3    53133526    rs2581829    A    G    300.86    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.643;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.279;QD=13.08;ReadPosRankSum=-0.961;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467048    GT:AD:DP:GQ:PL    0/1:13,10:23:99:331,0,426
3    53139506    rs2564942    C    T    229.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.31;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.817;QD=10.42;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296292    GT:AD:DP:GQ:PL    0/1:9,12:22:99:259,0,307
3    53139507    rs2581774    A    G    236.55    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.162;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.178;QD=10.75;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296292    GT:AD:DP:GQ:PL    0/1:10,12:22:99:267,0,317
3    53212574    rs2306571    C    G    456.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477794    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:489,36,0
3    53213538    rs2035451    C    G    560.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477794    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:593,45,0
3    53215875    rs11130350    A    C    1331.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477794    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1365,99,0
3    53216051    rs6445568    T    C    151.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477794    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:184,15,0
3    53220444    rs6793352    T    C    1140    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.62;MQ0=0;QD=32.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464818    GT:AD:DP:GQ:PL    1/1:0,35:35:96.30:1173,96,0
3    53220473    rs34435761    T    TC    817.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=6;HaplotypeScore=287.5382;IndelType=I;MQ=59.4;MQ0=0;QD=19.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464818    GT:AD:DP:GQ:PL    1/1:26,15:41:99:860,105,0
3    53220479    rs3830264    C    CG    946.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.374;DB;DP=43;FS=8.247;HRun=0;HaplotypeScore=254.486;IndelType=I;MQ=60.22;MQ0=0;MQRankSum=2.026;QD=22.02;ReadPosRankSum=-0.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464818    GT:AD:DP:GQ:PL    1/1:20,23:43:18.04:989,18,0
3    53222761    rs2306574    C    T    1990.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_AMINO_ACID_CHANGE=L481;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53222736_53222874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330452    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2023,150,0
3    53223291    rs7630600    T    G    483.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464818    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:516,39,0
3    53223927    rs1075865    C    G    5418.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6988;MQ=59.25;MQ0=0;QD=30.27;SNPEFF_AMINO_ACID_CHANGE=T594;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53223889_53224017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330452    GT:AD:DP:GQ:PL    1/1:1,178:179:99:5419,448,0
3    53224002    rs900495    T    C    6465.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=216;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7608;MQ=59.7;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=P619;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53223889_53224017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330452    GT:AD:DP:GQ:PL    1/1:1,215:216:99:6466,512,0
3    53259996    rs3816767    G    A    52.10    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=14;Dels=0.0;FS=9.622;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.694;QD=3.72;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460243    GT:AD:DP:GQ:PL    0/1:9,4:14:82.10:82,0,266
3    53260710    rs2279321    G    A    207.29    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=12.19;ReadPosRankSum=-0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460243    GT:AD:DP:GQ:PL    0/1:8,9:17:99:237,0,217
3    53260716    rs2279322    C    T    234.38    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=11.72;ReadPosRankSum=-0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460243    GT:AD:DP:GQ:PL    0/1:9,11:20:99:264,0,232
3    53262867    rs13075304    G    A    845.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466765    GT:AD:DP:GQ:PL    1/1:0,26:26:69.19:879,69,0
3    53263200    rs3736155    C    G    754.68    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.237;DB;DP=52;Dels=0.0;FS=3.184;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.502;QD=14.51;ReadPosRankSum=1.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466765    GT:AD:DP:GQ:PL    0/1:24,28:52:99:785,0,781
3    53263279    rs3736156    A    G    388.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.903;QD=15.52;ReadPosRankSum=1.142;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466765    GT:AD:DP:GQ:PL    0/1:10,14:25:99:418,0,238
3    53267133    rs6445573    G    C    618.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487660    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:651,48,0
3    53267155    rs2242301    G    A    161.57    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.658;DB;DP=20;Dels=0.0;FS=4.931;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=8.08;ReadPosRankSum=0.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487660    GT:AD:DP:GQ:PL    0/1:14,6:20:99:192,0,380
3    53321631    rs9628    A    C    1874.01    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.064;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.93;MQ0=0;MQRankSum=-0.205;QD=13.99;ReadPosRankSum=0.214;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=DCP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294241    GT:AD:DP:GQ:PL    0/1:70,64:134:99:1904,0,2153
3    53322431    rs62256054    G    C    143.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=DCP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294241    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
3    53324819    rs66506434    ATGGCAC    A    1564.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=414.1829;IndelType=D;MQ=32.17;MQ0=0;QD=40.12;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=DCP1A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000294241    GT:AD:DP:GQ:PL    1/1:13,24:39:72.25:1607,72,0
3    53324915    rs3732834    A    G    1215    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.89;MQ0=0;QD=31.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384175    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1248,105,0
3    53338368    rs35734433    T    C    431.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.498;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=12.34;ReadPosRankSum=-0.084;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=DCP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294241    GT:AD:DP:GQ:PL    0/1:21,14:35:99:462,0,673
3    53529140    rs312480    T    C    610.88    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.344;QD=15.27;ReadPosRankSum=-1.553;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422281    GT:AD:DP:GQ:PL    0/1:17,23:40:99:641,0,494
3    53685039    rs2276836    T    C    365.46    PASS    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.05;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.95;QD=19.23;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    0/1:4,15:19:99:395,0,115
3    53700550    rs2250736    T    C    1064.98    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.361;DB;DP=86;Dels=0.0;FS=3.171;HRun=0;HaplotypeScore=0.9979;MQ=58.65;MQ0=0;MQRankSum=1.167;QD=12.38;ReadPosRankSum=-1.266;SNPEFF_AMINO_ACID_CHANGE=D368;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53700366_53700562;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    0/1:44,42:86:99:1095,0,1338
3    53700704    rs3821856    A    G    140.10    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=11.68;ReadPosRankSum=0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    0/1:5,6:12:99:170,0,180
3    53752120    rs2633724    T    C    115.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
3    53760700    rs112443124    A    AT    338.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=27.3824;IndelType=I;MQ=57.87;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:381,33,0
3    53766026    rs2612033    T    C    1106.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,33:33:87.25:1139,87,0
3    53766212    rs2306866    A    T    213.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
3    53769479    rs1045958    C    T    1717.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.031;DB;DP=59;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.9997;MQ=58.82;MQ0=0;MQRankSum=-1.417;QD=29.11;ReadPosRankSum=-0.724;SNPEFF_AMINO_ACID_CHANGE=S593;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53769401_53769530;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000481478    GT:AD:DP:GQ:PL    1/1:1,57:59:98.44:1750,98,0
3    53776857    rs2577329    C    G    180.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:214,18,0
3    53776872    rs2577328    T    G    302.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:336,27,0
3    53776995    rs2612026    T    C    1837.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1870,141,0
3    53778620    rs28365115    C    G    210.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:244,21,0
3    53779580    rs2612024    G    C    290.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:324,24,0
3    53779825    rs3821860    A    G    770.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:804,60,0
3    53780082    rs2577326    A    G    162.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
3    53806803    rs2278517    G    C    381.31    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=58.78;MQ0=0;MQRankSum=-0.132;QD=20.07;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    0/1:6,13:19:99:411,0,154
3    53814197    rs1829423    G    A    233.46    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.976;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=58.17;MQ0=0;MQRankSum=-0.894;QD=8.34;ReadPosRankSum=-0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    0/1:17,11:28:99:263,0,566
3    53814308    rs3733070    C    T    35.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    0/1:4,2:6:65.94:66,0,123
3    53834091    rs59191645    C    A    132.97    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=16.62;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288139    GT:AD:DP:GQ:PL    0/1:3,5:8:95.51:163,0,96
3    53856653    rs2241808    C    T    447.85    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=3.222;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.226;QD=14.45;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=A240;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53856518_53856669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315251    GT:AD:DP:GQ:PL    0/1:15,16:31:99:478,0,390
3    53880789    rs2232332    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    53882661    rs2232333    A    G    837.52    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.875;DB;DP=96;Dels=0.0;FS=0.919;HRun=0;HaplotypeScore=0.8321;MQ=60.34;MQ0=0;MQRankSum=0.543;QD=8.72;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:58,38:96:99:868,0,1929
3    53882663    rs1025690    G    A    1823.97    HaplotypeScoreFilter13    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=3.993;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=81.7647;MQ=60.34;MQ0=0;MQRankSum=-0.094;QD=19.2;ReadPosRankSum=-0.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:39,56:95:99:1854,0,795
3    53882673    rs11411532    G    GT    3504.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;FS=0.0;HRun=6;HaplotypeScore=526.8995;IndelType=I;MQ=60.56;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    1/1:7,90:97:99:3504,280,0
3    53883546    rs5849010    C    CA    529.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=6;HaplotypeScore=65.8084;IndelType=I;MQ=48.11;MQ0=0;QD=40.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:571,39,0
3    53883558    rs71074937    T    TA    374.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=93.1287;IndelType=I;MQ=48.92;MQ0=0;QD=23.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    1/1:3,13:16:39.10:416,39,0
3    53883722    rs1025689    C    G    938.41    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.132;DB;DP=117;Dels=0.0;FS=0.735;HRun=2;HaplotypeScore=1.9318;MQ=58.61;MQ0=0;MQRankSum=0.191;QD=8.02;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=P42;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53883682_53883822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:71,46:117:99:968,0,1956
3    53883910    rs4687751    C    T    423.21    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=3.837;DB;DP=29;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.355;QD=14.59;ReadPosRankSum=1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:14,15:29:99:453,0,396
3    53886912    rs3733075    C    T    664.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.383;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.383;QD=18.98;ReadPosRankSum=0.65;SNPEFF_AMINO_ACID_CHANGE=Y123;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53886898_53887024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:15,20:35:99:694,0,475
3    53890787    rs3821867    G    A    206.65    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=10.33;ReadPosRankSum=-1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:9,11:20:99:237,0,310
3    53891097    rs2276840    C    G    574.83    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=2.919;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.515;QD=11.73;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:29,20:49:99:605,0,929
3    53892553    rs13315972    C    T    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
3    53892641    rs9840079    T    G    167.12    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=15.19;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288167    GT:AD:DP:GQ:PL    0/1:5,6:11:99:197,0,162
3    53898555    rs2884631    A    G    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231909    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,69
3    53905308    rs1046677    T    C    830.03    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.908;DB;DP=81;Dels=0.0;FS=4.373;HRun=2;HaplotypeScore=0.0;MQ=58.85;MQ0=0;MQRankSum=-1.862;QD=10.25;ReadPosRankSum=0.019;SNPEFF_AMINO_ACID_CHANGE=G211;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53905259_53905523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231909    GT:AD:DP:GQ:PL    0/1:43,38:81:99:860,0,1264
3    53906513    rs4687757    G    A    2785.32    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.998;DB;DP=191;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2064;MQ=59.52;MQ0=0;MQRankSum=2.38;QD=14.58;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=I105;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_53906411_53906551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231909    GT:AD:DP:GQ:PL    0/1:98,93:191:99:2815,0,3151
3    53906663    rs2289203    T    C    245.91    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=13.66;ReadPosRankSum=1.288;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498740    GT:AD:DP:GQ:PL    0/1:10,8:18:99:276,0,249
3    53906891    rs45511795    C    T    139.56    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.876;QD=15.51;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498740    GT:AD:DP:GQ:PL    0/1:4,5:9:99:170,0,142
3    53906951    rs12632292    A    G    315.47    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.892;DB;DP=30;Dels=0.0;FS=2.965;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.214;QD=10.52;ReadPosRankSum=-0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498740    GT:AD:DP:GQ:PL    0/1:17,13:30:99:345,0,565
3    53910121    rs5849012    AG    A    208.14    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=3.802;DB;DP=21;FS=2.57;HRun=1;HaplotypeScore=85.1757;IndelType=D;MQ=58.83;MQ0=0;MQRankSum=0.817;QD=9.91;ReadPosRankSum=-1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498740    GT:AD:DP:GQ:PL    0/1:13,8:21:99:247,0,442
3    53912341    rs3733081    C    A    468.31    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=42;Dels=0.0;FS=3.053;HRun=2;HaplotypeScore=0.9665;MQ=58.89;MQ0=0;MQRankSum=-0.46;QD=11.15;ReadPosRankSum=-0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335754    GT:AD:DP:GQ:PL    0/1:24,18:42:99:498,0,793
3    53916130    rs2276845    A    G    109.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=12.13;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-884K10.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488746    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,168
3    53921022    rs1020082    T    C    300.36    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=22;Dels=0.0;FS=3.183;HRun=2;HaplotypeScore=0.9947;MQ=58.95;MQ0=0;MQRankSum=0.626;QD=13.65;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-884K10.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485414    GT:AD:DP:GQ:PL    0/1:10,12:22:99:330,0,342
3    53921028    rs10440151    T    G    263.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.173;DB;DP=21;Dels=0.0;FS=3.056;HRun=1;HaplotypeScore=0.9947;MQ=58.89;MQ0=0;MQRankSum=-0.462;QD=12.53;ReadPosRankSum=-0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-884K10.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485414    GT:AD:DP:GQ:PL    0/1:9,12:21:99:293,0,308
3    53922257    rs2304576    A    G    152.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=19.06;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-884K10.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485414    GT:AD:DP:GQ:PL    0/1:3,5:8:99:182,0,103
3    53922620    rs3816144    A    G    361.91    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.032;QD=19.05;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-884K10.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495461    GT:AD:DP:GQ:PL    0/1:8,11:19:99:392,0,264
3    54354431    rs41277447    G    T    669.97    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.205;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8675;MQ=59.56;MQ0=0;MQRankSum=-0.049;QD=12.88;ReadPosRankSum=0.909;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:23,29:52:99:700,0,698
3    54354510    rs9879885    T    C    1835.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=I82;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_54354469_54354585;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1869,150,0
3    54419704    rs9835975    G    A    127.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
3    54419977    rs9836159    C    T    2192.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2226,163,0
3    54420201    rs74833192    T    G    37.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.44;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:2,3:5:67.18:67,0,67
3    54420721    rs66653184    G    GTTT    313.10    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=47;FS=2.622;HRun=18;HaplotypeScore=396.3477;IndelType=I;MQ=46.26;MQ0=0;MQRankSum=-2.486;QD=6.66;ReadPosRankSum=-1.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:25,5:47:44.22:352,0,44
3    54537372    rs7372750    T    C    96.09    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.694;QD=7.39;ReadPosRankSum=-1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:9,4:13:99:126,0,330
3    54596815    rs9814659    T    C    4281.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.46;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4282,343,0
3    54597167    rs7374733    T    C    205.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492460    GT:AD:DP:GQ:PL    1/1:0,10:10:18.06:238,18,0
3    54604188    rs2251788    T    C    2070.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=30.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2104,178,0
3    54615971    rs6782115    A    G    576.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:609,45,0
3    54676441    rs3832224    CA    C    311.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=6;HaplotypeScore=32.1144;IndelType=D;MQ=61.64;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:2,11:13:33.08:354,33,0
3    54798258    rs3732748    G    A    6409.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.171;DB;DP=186;Dels=0.0;FS=3.439;HRun=1;HaplotypeScore=3.193;MQ=59.6;MQ0=0;MQRankSum=0.971;QD=34.46;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=Q325;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_54798245_54798378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438476    GT:AD:DP:GQ:PL    1/1:1,185:186:99:6410,443,0
3    54871014    rs2694105    C    G    102.35    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=7.87;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:8,5:13:99:132,0,295
3    54919185    rs11716356    A    G    323.25    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.128;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.498;QD=13.47;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:10,14:24:99:353,0,335
3    54919272    rs1405330    A    G    2978.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.52;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3012,229,0
3    54919351    rs10510774    A    G    1721.11    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.884;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.34;MQ0=0;MQRankSum=0.385;QD=12.29;ReadPosRankSum=0.316;SNPEFF_AMINO_ACID_CHANGE=E558;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_54919308_54919353;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398624    GT:AD:DP:GQ:PL    0/1:72,68:140:99:1751,0,2217
3    54919480    rs2293662    G    A    999.02    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=67;Dels=0.0;FS=3.413;HRun=1;HaplotypeScore=0.734;MQ=59.31;MQ0=0;MQRankSum=1.169;QD=14.91;ReadPosRankSum=1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:35,31:67:99:1029,0,1125
3    54921903    rs3773594    T    C    321.88    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.892;QD=13.99;ReadPosRankSum=-0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468658    GT:AD:DP:GQ:PL    0/1:12,11:23:99:352,0,423
3    54922235    rs2360659    G    A    223.56    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.666;QD=24.84;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468658    GT:AD:DP:GQ:PL    0/1:2,7:9:51.12:254,0,51
3    54922313    rs2360660    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468658    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    54928496    rs1526595    T    C    310.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:344,27,0
3    54928762    rs1526594    G    C    205.98    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.839;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.914;QD=12.12;ReadPosRankSum=-2.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438476    GT:AD:DP:GQ:PL    0/1:8,9:17:99:236,0,269
3    54930640    rs79621910    C    G    357.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.201;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=59.17;MQ0=0;MQRankSum=-1.23;QD=12.78;ReadPosRankSum=-0.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438476    GT:AD:DP:GQ:PL    0/1:12,16:28:99:388,0,418
3    54930699    rs6445708    A    T    1063.24    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.666;DB;DP=75;Dels=0.0;FS=3.551;HRun=0;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=0.271;QD=14.18;ReadPosRankSum=1.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438476    GT:AD:DP:GQ:PL    0/1:41,34:75:99:1093,0,1250
3    54930773    rs17253119    A    G    1534.65    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DB;DP=125;Dels=0.0;FS=5.601;HRun=0;HaplotypeScore=1.5779;MQ=59.45;MQ0=0;MQRankSum=1.384;QD=12.18;ReadPosRankSum=-1.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438476    GT:AD:DP:GQ:PL    0/1:68,57:125:99:1565,0,1960
3    54930794    rs17054524    C    T    2015.92    PASS    AB=0.445;AC=1;AF=0.50;AN=2;BaseQRankSum=1.284;DB;DP=128;Dels=0.0;FS=0.678;HRun=0;HaplotypeScore=3.33;MQ=59.46;MQ0=0;MQRankSum=-0.449;QD=15.75;ReadPosRankSum=1.76;SNPEFF_AMINO_ACID_CHANGE=G661;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_54930776_54930897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398624    GT:AD:DP:GQ:PL    0/1:57,71:128:99:2046,0,1594
3    54933763    rs41277455    G    A    781.50    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=4.721;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.466;QD=17.37;ReadPosRankSum=0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:21,24:45:99:811,0,556
3    54961949    rs78978076    C    T    2882.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.24;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2916,217,0
3    55038898    rs4955827    A    G    1337.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.41;MQ0=0;MQRankSum=-0.083;QD=30.4;ReadPosRankSum=0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:1,41:44:99:1371,105,0
3    55039088    rs9871268    G    C    35.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
3    55041650    rs112147349    G    A    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
3    55043613    rs3773570    G    C    207.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.747;QD=25.99;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:1,7:8:18.06:241,18,0
3    55051950    rs2292703    A    G    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
3    55052369    rs78296127    C    T    1972.67    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.863;DB;DP=141;Dels=0.0;FS=4.357;HRun=0;HaplotypeScore=4.2514;MQ=59.67;MQ0=0;MQRankSum=1.097;QD=13.99;ReadPosRankSum=-0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:70,71:141:99:2003,0,2146
3    55107264    rs896108    G    A    36.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.38;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:3,2:5:66.91:67,0,95
3    55107317    rs75891966    C    T    207.36    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.1;MQ0=0;MQRankSum=-3.387;QD=12.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:7,9:16:99:237,0,247
3    55107361    rs11271063    AATTTGCTTTACAAAATATGGT    A    2900.26    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=5.96;DB;DP=49;FS=3.055;HRun=0;HaplotypeScore=881.3189;IndelType=D;MQ=48.87;MQ0=0;MQRankSum=-5.819;QD=59.19;ReadPosRankSum=1.558;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:27,22:49:99:2939,0,7626
3    55108055    rs358076    G    A    725.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:758,57,0
3    55108149    rs17054785    A    G    921.83    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.422;DB;DP=59;Dels=0.0;FS=1.253;HRun=0;HaplotypeScore=0.9999;MQ=58.82;MQ0=0;MQRankSum=0.156;QD=15.62;ReadPosRankSum=1.275;SNPEFF_AMINO_ACID_CHANGE=A1064;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_55108141_55108580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288197    GT:AD:DP:GQ:PL    0/1:20,39:59:99:952,0,510
3    55768688    rs815451    G    C    1612.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.52;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288221    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1645,120,0
3    55989276    rs67076752    TTGTGTGTGTGTG    T    952.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=342.7365;IndelType=D;MQ=51.77;MQ0=0;QD=28.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288221    GT:AD:DP:GQ:PL    1/1:22,12:34:36.09:994,36,0
3    56052839    rs3816575    G    T    2110.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288221    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2144,166,0
3    56207448    rs6804221    T    C    1029.24    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.838;DB;DP=70;Dels=0.0;FS=1.228;HRun=0;HaplotypeScore=2.9294;MQ=60.0;MQ0=0;MQRankSum=0.1;QD=14.7;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288221    GT:AD:DP:GQ:PL    0/1:34,36:70:99:1059,0,1103
3    56207634    rs6764295    G    A    455.91    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.479;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6493;MQ=59.03;MQ0=0;MQRankSum=1.732;QD=19.0;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288221    GT:AD:DP:GQ:PL    0/1:7,17:24:99:486,0,182
3    56593105    rs2054987    G    C    130.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326595    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
3    56593170    rs2054988    G    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326595    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
3    56593543    rs12486047    C    A    2132.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326595    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2165,169,0
3    56593680    rs11130525    T    C    2243.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326595    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2276,166,0
3    56597954    rs6769055    C    T    1837.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=T115;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_56597712_56598153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394672    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1871,141,0
3    56598291    rs11285260    TA    T    209.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=15.1992;IndelType=D;MQ=56.82;MQ0=0;QD=35.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439445    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:252,18,0
3    56600531    rs10865997    G    A    567.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422788    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:600,48,0
3    56605404    rs34099535    T    TA    859.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=11;HaplotypeScore=144.4032;IndelType=I;MQ=60.11;MQ0=0;QD=22.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434467    GT:AD:DP:GQ:PL    1/1:7,30:38:90.14:901,90,0
3    56627048    rs1388256    A    G    2595.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_AMINO_ACID_CHANGE=Q295;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_56626998_56627129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326595    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2629,202,0
3    56627358    rs9985317    G    T    127.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494672    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:160,12,0
3    56627598    rs1491170    A    G    1627.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=Q339R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_56627519_56627769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422222    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1660,126,0
3    56647934    rs7612599    A    G    656.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326595    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:690,51,0
3    56650051    rs77152637    A    ACTT    3007.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=131.0384;IndelType=I;MQ=58.46;MQ0=0;QD=61.37;SNPEFF_AMINO_ACID_CHANGE=T561TS;SNPEFF_CODON_CHANGE=act/aCTTct;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_3_56649950_56650081;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422222    GT:AD:DP:GQ:PL    1/1:2,45:49:99:3049,141,0
3    56650178    rs9833926    A    G    424.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431842    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:458,36,0
3    56653609    rs72573620    CGT    C    2026.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=144.7114;IndelType=D;MQ=60.72;MQ0=0;QD=47.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:0,43:43:99:2069,129,0
3    56654002    rs3830333    GTTTGT    G    2896.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=304.6492;IndelType=D;MQ=48.81;MQ0=0;QD=57.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:4,45:50:99:2938,138,0
3    56654141    rs2291501    C    T    141.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=28.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:174,15,0
3    56658481    rs2291499    G    C    2138.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461863    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2171,157,0
3    56661320    rs2029464    T    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461863    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
3    56661909    rs143894847    AAAT    A    203.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=21.2407;IndelType=D;MQ=44.1;MQ0=0;QD=40.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:245,15,0
3    56666957    rs9878373    T    G    131.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
3    56667682    rs9835332    G    C    1817.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.781;QD=35.64;ReadPosRankSum=-1.189;SNPEFF_AMINO_ACID_CHANGE=T1046R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_56667072_56667994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000493960    GT:AD:DP:GQ:PL    1/1:1,50:51:99:1850,138,0
3    56672608    rs4681945    G    C    336.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:369,27,0
3    56674190    rs1489949    A    C    1023.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.23;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1057,78,0
3    56674328    rs62251184    C    T    37.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:67,0,28
3    56675140    rs5849158    C    CACA    360.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=15.0106;IndelType=I;MQ=43.0;MQ0=0;QD=60.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:402,18,0
3    56694664    rs9820759    C    A    241.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478052    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
3    56694877    rs9858728    A    G    1616.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478052    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1650,129,0
3    56695060    rs7619465    T    A    634.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9979;MQ=59.07;MQ0=0;QD=25.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C3orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355628    GT:AD:DP:GQ:PL    1/1:0,25:25:57.15:668,57,0
3    56763316    rs1565376    G    A    933.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=57.39;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=H492;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_56763049_56763650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000497267    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:966,72,0
3    56763328    rs1565377    T    C    1125.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.0;MQ0=0;QD=32.15;SNPEFF_AMINO_ACID_CHANGE=G488;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_56763049_56763650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000497267    GT:AD:DP:GQ:PL    1/1:0,35:35:96.28:1158,96,0
3    56771251    rs3772219    A    C    2643.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.642;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_AMINO_ACID_CHANGE=L306V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_56771213_56771383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000497267    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2677,223,0
3    56779011    rs2046823    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296315    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    56787451    rs3821412    C    T    810.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477440    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:843,63,0
3    56787692    rs2276720    A    G    696.56    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.013;QD=16.58;ReadPosRankSum=-1.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477440    GT:AD:DP:GQ:PL    0/1:20,22:42:99:727,0,685
3    56992738    rs73091596    C    T    169.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.94;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338458    GT:AD:DP:GQ:PL    0/1:4,6:10:99:199,0,129
3    56993031    rs4626067    C    T    95.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=11.92;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338458    GT:AD:DP:GQ:PL    0/1:3,5:8:99:125,0,107
3    57131529    rs6764188    A    C    36.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296318    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
3    57132200    rs2291462    A    G    1221.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.23;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=L367;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57131624_57132566;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320057    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1254,96,0
3    57135518    rs2291461    C    G    172.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467210    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
3    57137090    rs2247656    A    G    1338.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.54;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467210    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1372,105,0
3    57138419    rs6780995    G    A    2348.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=T111M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57138370_57138435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320057    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2382,172,0
3    57139833    rs1545982    G    A    1011.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467210    GT:AD:DP:GQ:PL    1/1:0,27:27:81.23:1045,81,0
3    57139972    rs1545981    A    G    1944.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_AMINO_ACID_CHANGE=H196;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57139885_57140036;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427856    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1978,162,0
3    57140108    rs2035654    G    A    3347.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.75;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296318    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3348,253,0
3    57143376    rs9835455    T    C    569.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.47;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296318    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:602,45,0
3    57143995    rs6445856    A    G    173.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479825    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:206,18,0
3    57148968    rs11916303    C    A    864.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17RD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296318    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:898,69,0
3    57293802    rs62251992    A    G    143.71    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=11.98;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288266    GT:AD:DP:GQ:PL    0/1:7,5:12:99:174,0,239
3    57303478    rs10662232    A    AGAATT    390.63    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=68.4901;IndelType=I;MQ=57.43;MQ0=0;MQRankSum=-0.533;QD=27.9;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482800    GT:AD:DP:GQ:PL    0/1:9,5:14:99:430,0,447
3    57303684    rs11544593    A    G    902.98    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=5.082;DB;DP=63;Dels=0.0;FS=6.954;HRun=1;HaplotypeScore=0.5784;MQ=59.63;MQ0=0;MQRankSum=1.943;QD=14.33;ReadPosRankSum=-0.084;SNPEFF_AMINO_ACID_CHANGE=E700G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57303569_57307496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288266    GT:AD:DP:GQ:PL    0/1:32,31:63:99:933,0,875
3    57314594    rs62251997    A    G    183.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.3;ReadPosRankSum=0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542404    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,198
3    57321916    rs883244    T    G    751.25    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.981;DB;DP=64;Dels=0.0;FS=3.735;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.413;QD=11.74;ReadPosRankSum=-0.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389601    GT:AD:DP:GQ:PL    0/1:36,28:64:99:781,0,1034
3    57335691    rs62252001    T    A    107.09    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=0.336;QD=10.71;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344804    GT:AD:DP:GQ:PL    0/1:5,5:10:99:137,0,137
3    57335705    rs71921409    TACACACAC    T    466.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=159.7484;IndelType=D;MQ=34.34;MQ0=0;QD=38.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344804    GT:AD:DP:GQ:PL    1/1:1,6:12:26.87:509,27,0
3    57335747    rs4681970    C    T    34.66    QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.59;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.37;MQ0=0;MQRankSum=-0.564;QD=1.33;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344804    GT:AD:DP:GQ:PL    0/1:13,13:26:64.65:65,0,243
3    57335876    rs4060726    C    T    993.29    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=65;Dels=0.0;FS=0.938;HRun=0;HaplotypeScore=2.8706;MQ=56.35;MQ0=0;MQRankSum=0.098;QD=15.28;ReadPosRankSum=-1.292;SNPEFF_AMINO_ACID_CHANGE=G2893S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57335763_57335967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:32,33:65:99:1023,0,866
3    57348685    rs150487595    GA    G    179.19    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=17;FS=0.0;HRun=8;HaplotypeScore=43.3421;IndelType=D;MQ=61.88;MQ0=0;MQRankSum=0.267;QD=10.54;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344804    GT:AD:DP:GQ:PL    0/1:8,9:17:99:218,0,135
3    57430988    rs6768943    G    A    888.53    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.423;DB;DP=79;Dels=0.0;FS=1.853;HRun=0;HaplotypeScore=0.8667;MQ=59.42;MQ0=0;MQRankSum=0.569;QD=11.25;ReadPosRankSum=-1.073;SNPEFF_AMINO_ACID_CHANGE=Y1423;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57430901_57431146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:44,34:79:99:919,0,1258
3    57431985    rs2121743    G    A    674.89    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=68;Dels=0.0;FS=1.024;HRun=1;HaplotypeScore=0.9967;MQ=59.73;MQ0=0;MQRankSum=-0.04;QD=9.92;ReadPosRankSum=0.291;SNPEFF_AMINO_ACID_CHANGE=L1295;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57431758_57431997;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:42,25:68:99:705,0,1314
3    57432064    rs2121742    C    T    427.83    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.822;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.789;QD=17.11;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:12,13:25:99:458,0,345
3    57438710    .    C    A    178.41    FSFilter60;HaplotypeScoreFilter13    AB=0.288;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.541;DP=66;Dels=0.0;FS=61.475;HRun=2;HaplotypeScore=13.7367;MQ=44.38;MQ0=0;MQRankSum=-4.867;QD=2.7;ReadPosRankSum=1.702;SNPEFF_AMINO_ACID_CHANGE=A1193S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57438570_57438742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:19,47:66:99:208,0,629
3    57456093    rs35152693    C    CA    191.99    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.409;DB;DP=21;FS=0.0;HRun=10;HaplotypeScore=65.7542;IndelType=I;MQ=59.42;MQ0=0;MQRankSum=0.041;QD=9.14;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:11,10:21:99:231,0,189
3    57456371    rs9871422    T    C    753.78    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.655;DB;DP=61;Dels=0.0;FS=2.974;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.518;QD=12.36;ReadPosRankSum=-1.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:35,26:61:99:784,0,1083
3    57457123    rs6445886    C    T    190.32    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=7.05;ReadPosRankSum=-0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:16,11:27:99:220,0,494
3    57457440    rs6445887    A    C    172.72    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=17.27;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:4,6:10:99:203,0,124
3    57469053    rs9826084    A    C    878.57    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=3.866;DB;DP=72;Dels=0.0;FS=1.374;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.801;QD=12.2;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:43,29:72:99:909,0,1392
3    57469097    rs9863860    C    T    1068.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.647;DB;DP=107;Dels=0.0;FS=2.959;HRun=2;HaplotypeScore=2.2426;MQ=59.35;MQ0=0;MQRankSum=0.871;QD=9.99;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:63,42:107:99:1098,0,2034
3    57469272    rs9864150    C    T    809.68    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.35;QD=12.85;ReadPosRankSum=1.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:36,27:63:99:840,0,1224
3    57469348    rs35624030    A    AT    140.84    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=68.947;IndelType=I;MQ=56.85;MQ0=0;MQRankSum=1.041;QD=9.39;ReadPosRankSum=2.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:10,5:15:99:180,0,364
3    57469357    rs10510792    G    T    272.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9681;MQ=56.85;MQ0=0;MQRankSum=-0.429;QD=18.19;ReadPosRankSum=-1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:5,10:15:99:303,0,171
3    57475351    rs6806444    T    G    708.84    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=2.132;DB;DP=47;Dels=0.0;FS=1.256;HRun=1;HaplotypeScore=0.0;MQ=58.51;MQ0=0;MQRankSum=-0.782;QD=15.08;ReadPosRankSum=0.498;SNPEFF_AMINO_ACID_CHANGE=T467P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57475236_57475414;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351747    GT:AD:DP:GQ:PL    0/1:20,27:47:99:739,0,626
3    57489591    rs4681992    C    A    35.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.86;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311202    GT:AD:DP:GQ:PL    0/1:2,2:4:65.45:65,0,70
3    57493989    rs13072470    T    A    61.59    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5115;MQ=59.07;MQ0=0;MQRankSum=-0.922;QD=8.8;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311202    GT:AD:DP:GQ:PL    0/1:2,5:7:64.96:92,0,65
3    57528503    rs9311651    A    G    780.09    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=62;Dels=0.0;FS=2.07;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.016;QD=12.58;ReadPosRankSum=-1.495;SNPEFF_AMINO_ACID_CHANGE=V32A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57528428_57528630;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311202    GT:AD:DP:GQ:PL    0/1:33,29:62:99:810,0,1040
3    57542173    rs2241988    C    T    139.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.426;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.259;QD=11.6;ReadPosRankSum=0.869;SNPEFF_AMINO_ACID_CHANGE=R23W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57542004_57543414;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311180    GT:AD:DP:GQ:PL    0/1:6,6:12:99:169,0,211
3    57544841    rs4681999    C    G    62.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311180    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:94,9,0
3    57544923    rs57375057    G    A    109.93    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.38;QD=9.16;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311180    GT:AD:DP:GQ:PL    0/1:7,5:12:99:140,0,247
3    57544959    .    AAAAC    A    332.89    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.736;DP=23;FS=0.0;HRun=0;HaplotypeScore=136.8344;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=-0.817;QD=14.47;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311180    GT:AD:DP:GQ:PL    0/1:14,9:23:99:372,0,741
3    57545169    rs3832195    G    GC    773.24    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.319;DB;DP=49;FS=8.769;HRun=0;HaplotypeScore=105.5524;IndelType=I;MQ=60.41;MQ0=0;MQRankSum=0.153;QD=15.78;ReadPosRankSum=-0.885;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311180    GT:AD:DP:GQ:PL    0/1:29,20:49:99:812,0,1061
3    57561598    rs6808217    A    G    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303436    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,107
3    57582718    rs80159797    GAAA    G    237.95    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.91;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=66.8527;IndelType=D;MQ=55.52;MQ0=0;MQRankSum=-0.289;QD=14.87;ReadPosRankSum=0.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488156    GT:AD:DP:GQ:PL    0/1:9,7:16:99:277,0,492
3    57627500    rs9873675    T    C    323.78    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=23;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.279;QD=14.08;ReadPosRankSum=0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311128    GT:AD:DP:GQ:PL    0/1:10,13:23:99:354,0,324
3    57882601    rs17058639    C    T    1390.30    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=4.162;DB;DP=113;Dels=0.0;FS=3.536;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=0.0;QD=12.3;ReadPosRankSum=0.68;SNPEFF_AMINO_ACID_CHANGE=D426;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_57882600_57882659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLMAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449503    GT:AD:DP:GQ:PL    0/1:63,50:113:99:1420,0,1739
3    57893507    rs9864975    A    G    115.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.38;ReadPosRankSum=2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLMAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295951    GT:AD:DP:GQ:PL    0/1:4,4:8:99:145,0,136
3    58080400    rs74513320    C    T    464.29    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.878;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.02;QD=14.98;ReadPosRankSum=2.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:16,15:31:99:494,0,574
3    58080505    rs7644723    G    T    5250.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,150:150:99:5250,385,0
3    58081888    rs1522384    T    C    1319.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=S140;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58081868_58081945;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419752    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1352,102,0
3    58083446    rs939882    G    A    208.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
3    58084795    rs3732638    A    G    116.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:149,12,0
3    58089516    rs6445945    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
3    58089585    rs6445946    T    A    205.66    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.01;QD=12.1;ReadPosRankSum=-0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:8,9:17:99:236,0,264
3    58089594    rs35856102    GT    G    362.44    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=22;FS=0.0;HRun=4;HaplotypeScore=87.0619;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=0.363;QD=16.47;ReadPosRankSum=-0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:10,12:22:99:401,0,384
3    58089877    rs1522386    A    G    246.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
3    58090893    rs150747960    G    A    792.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.904;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6545;MQ=59.27;MQ0=0;MQRankSum=0.682;QD=13.9;ReadPosRankSum=1.288;SNPEFF_AMINO_ACID_CHANGE=R397Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58090807_58090943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419752    GT:AD:DP:GQ:PL    0/1:28,28:56:99:822,0,830
3    58094157    rs2259091    A    G    195.42    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.847;QD=12.21;ReadPosRankSum=-1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:9,7:16:99:225,0,288
3    58094852    rs7634236    C    T    290.54    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=14;Dels=0.0;FS=5.119;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.231;QD=20.75;ReadPosRankSum=1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:5,9:14:99:321,0,127
3    58095466    rs2708318    G    T    1161.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,31:32:87.29:1194,87,0
3    58095500    rs2686635    G    T    897.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:931,69,0
3    58095945    rs2686634    T    G    87.20    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=5.81;ReadPosRankSum=1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:10,4:15:99:117,0,295
3    58097396    rs2686632    T    C    112.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.04;ReadPosRankSum=-2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,145
3    58104877    rs3732634    G    A    31.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.39;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:3,2:5:61.94:62,0,110
3    58109162    rs1131356    G    A    746.17    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=66;Dels=0.0;FS=3.606;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.504;QD=11.31;ReadPosRankSum=-1.279;SNPEFF_AMINO_ACID_CHANGE=D1157N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58108820_58109417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:37,29:66:99:776,0,1215
3    58111285    rs3732633    T    G    325.88    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=2.577;DB;DP=29;Dels=0.0;FS=3.08;HRun=1;HaplotypeScore=0.9947;MQ=59.2;MQ0=0;MQRankSum=-0.812;QD=11.24;ReadPosRankSum=0.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:17,12:29:99:356,0,516
3    58112251    rs12495232    A    G    189.22    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.906;QD=10.51;ReadPosRankSum=2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:11,7:18:99:219,0,390
3    58112440    rs2362903    A    G    1882.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=A1222;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58112329_58112489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419752    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1916,144,0
3    58112488    rs2362904    C    T    405.72    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.033;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.626;QD=15.03;ReadPosRankSum=-0.607;SNPEFF_AMINO_ACID_CHANGE=P1238;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58112329_58112489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419752    GT:AD:DP:GQ:PL    0/1:14,13:27:99:436,0,365
3    58112556    rs2362905    G    C    187.54    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.663;QD=17.05;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:4,7:11:99:218,0,136
3    58116358    rs4475005    C    T    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:2,3:5:68.83:110,0,69
3    58116369    rs1882692    T    C    72.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.42;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,137
3    58118555    rs12632456    G    A    468.28    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=2.344;DB;DP=31;Dels=0.0;FS=5.782;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=15.11;ReadPosRankSum=-1.256;SNPEFF_AMINO_ACID_CHANGE=V1302M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58118535_58118658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419752    GT:AD:DP:GQ:PL    0/1:13,18:31:99:498,0,394
3    58118700    rs12638356    A    G    58.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.3;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:4,3:7:88.09:88,0,138
3    58121626    rs6445948    T    A    235.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:268,21,0
3    58129450    rs9826147    A    G    76.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.13;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:106,0,29
3    58133803    rs72402276    AT    A    74.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;FS=0.0;HRun=9;HaplotypeScore=18.4651;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=9.28;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:3,5:8:79.86:113,0,80
3    58140768    rs13075269    G    A    108.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=12.1;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470231    GT:AD:DP:GQ:PL    0/1:4,5:9:99:139,0,142
3    58145263    rs12634123    G    A    1458.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.41;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1491,111,0
3    58154177    rs13079906    G    A    156.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=20;Dels=0.0;FS=2.162;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=7.82;ReadPosRankSum=-0.537;SNPEFF_AMINO_ACID_CHANGE=S2210;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58154167_58154385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493452    GT:AD:DP:GQ:PL    0/1:12,8:20:99:186,0,292
3    58154327    rs8640    C    T    684.26    PASS    AB=0.172;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=23.6;ReadPosRankSum=-0.491;SNPEFF_AMINO_ACID_CHANGE=S2260;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58154167_58154385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493452    GT:AD:DP:GQ:PL    0/1:5,24:29:99:714,0,123
3    58155230    rs9870243    C    G    178.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.067;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.068;QD=11.91;ReadPosRankSum=0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295956    GT:AD:DP:GQ:PL    0/1:7,7:15:99:209,0,237
3    58179028    rs3732630    T    C    419.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=K281;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58178354_58179166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450710    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:452,36,0
3    58179318    rs9812109    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318316    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    58186911    rs4234389    A    G    826.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460422    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:859,63,0
3    58191242    rs17058970    C    G    752.43    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=56;Dels=0.0;FS=5.297;HRun=1;HaplotypeScore=0.9734;MQ=59.59;MQ0=0;MQRankSum=0.797;QD=13.44;ReadPosRankSum=0.353;SNPEFF_AMINO_ACID_CHANGE=R92;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58191198_58191287;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318316    GT:AD:DP:GQ:PL    0/1:26,30:56:99:782,0,850
3    58191266    rs2070117    C    T    608.10    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.574;DB;DP=52;Dels=0.0;FS=2.518;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.258;QD=11.69;ReadPosRankSum=0.24;SNPEFF_AMINO_ACID_CHANGE=T84;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58191198_58191287;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318316    GT:AD:DP:GQ:PL    0/1:29,23:52:99:638,0,807
3    58191433    rs9311671    G    A    105.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463694    GT:AD:DP:GQ:PL    0/1:2,4:6:60.52:135,0,61
3    58270963    rs6774235    T    C    761.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295962    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:795,63,0
3    58296209    rs111298198    CT    C    296.54    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=2.837;DB;DP=56;FS=0.0;HRun=12;HaplotypeScore=156.4718;IndelType=D;MQ=59.56;MQ0=0;MQRankSum=0.256;QD=5.3;ReadPosRankSum=-1.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-80H18.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544156    GT:AD:DP:GQ:PL    0/1:31,25:56:99:336,0,551
3    58302040    rs4681677    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-80H18.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544156    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    58302404    rs2292674    A    T    208.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.208;DB;DP=18;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.088;QD=11.59;ReadPosRankSum=-0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461797    GT:AD:DP:GQ:PL    0/1:9,9:18:99:239,0,303
3    58303069    rs3773012    C    T    357.60    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=17.88;ReadPosRankSum=1.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461797    GT:AD:DP:GQ:PL    0/1:9,11:20:99:388,0,307
3    58303123    rs1473971    G    A    801.91    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=37;Dels=0.0;FS=5.282;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.213;QD=21.67;ReadPosRankSum=-0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461797    GT:AD:DP:GQ:PL    0/1:11,26:37:99:832,0,340
3    58351660    rs111264652    C    CT    410.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.536;DB;DP=40;FS=0.0;HRun=15;HaplotypeScore=213.1927;IndelType=I;MQ=55.83;MQ0=0;MQRankSum=-0.307;QD=10.26;ReadPosRankSum=-0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    1/1:18,17:40:29.19:453,29,0
3    58355230    rs75261945    C    T    302.24    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.888;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.594;QD=14.39;ReadPosRankSum=0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    0/1:9,12:21:99:332,0,277
3    58355273    rs9867320    G    C    251.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:284,24,0
3    58368219    rs10662181    C    CT    138.71    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DB;DP=22;FS=0.0;HRun=17;HaplotypeScore=179.6335;IndelType=I;MQ=53.36;MQ0=0;MQRankSum=0.429;QD=6.3;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    0/1:10,9:22:17.10:178,0,17
3    58368357    rs56141849    T    C    823.47    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.748;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6809;MQ=58.8;MQ0=0;MQRankSum=1.397;QD=14.2;ReadPosRankSum=-0.168;SNPEFF_AMINO_ACID_CHANGE=N106;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58368241_58368427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356151    GT:AD:DP:GQ:PL    0/1:28,30:58:99:853,0,771
3    58381120    rs4553989    T    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    58381180    rs4553990    T    A    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.36;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:71,0,70
3    58381262    rs62258105    C    T    242    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=16.13;ReadPosRankSum=-1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    0/1:6,9:15:99:272,0,203
3    58385194    rs4075152    T    C    81.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
3    58396024    rs57857883    G    T    105.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.2;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,141
3    58398466    rs12635366    C    T    215.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:249,21,0
3    58398813    rs13071422    A    G    441.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:475,36,0
3    58398877    rs74377825    G    A    131.42    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=18.77;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302779    GT:AD:DP:GQ:PL    0/1:2,5:7:62.81:161,0,63
3    58410748    rs76887010    C    T    184.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.289;QD=15.38;ReadPosRankSum=-1.932;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302746    GT:AD:DP:GQ:PL    0/1:4,8:12:99:215,0,132
3    58414052    rs6445980    C    G    33.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.18;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469827    GT:AD:DP:GQ:PL    0/1:5,2:8:63.40:63,0,177
3    58414382    rs62259769    C    T    161.17    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.101;QD=12.4;ReadPosRankSum=-0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469827    GT:AD:DP:GQ:PL    0/1:6,7:13:99:191,0,203
3    58415590    rs2070662    C    A    697.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469827    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:730,54,0
3    58416538    rs4264746    T    C    2402.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=R127;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58416384_58416669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383714    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2436,190,0
3    58417190    rs7644457    G    C    358.35    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.026;QD=13.78;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302746    GT:AD:DP:GQ:PL    0/1:14,12:26:99:388,0,447
3    58520306    rs7611026    G    C    757.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302819    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:791,57,0
3    58520859    rs4681862    A    G    3526.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.28;MQ0=0;QD=36.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466689    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3527,256,0
3    58552329    rs11539086    C    G    455.40    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.422;DB;DP=37;Dels=0.0;FS=3.178;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.412;QD=12.31;ReadPosRankSum=1.679;SNPEFF_AMINO_ACID_CHANGE=E141Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58549844_58552422;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM107A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360997    GT:AD:DP:GQ:PL    0/1:19,17:37:99:485,0,656
3    58553160    rs7637862    T    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM107A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360997    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    58555343    rs7632668    C    T    431.87    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.575;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.51;QD=10.53;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM107A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360997    GT:AD:DP:GQ:PL    0/1:22,19:41:99:462,0,622
3    58555386    rs7609991    G    T    639.96    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.101;DB;DP=51;Dels=0.0;FS=2.453;HRun=2;HaplotypeScore=0.5784;MQ=59.09;MQ0=0;MQRankSum=0.655;QD=12.55;ReadPosRankSum=-0.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM107A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360997    GT:AD:DP:GQ:PL    0/1:29,22:51:99:670,0,764
3    58621935    rs6791782    C    T    1215.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=28.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482623    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1249,99,0
3    58625875    rs33966924    C    A    1812.70    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=123;Dels=0.0;FS=0.692;HRun=0;HaplotypeScore=0.9995;MQ=59.62;MQ0=0;MQRankSum=0.044;QD=14.74;ReadPosRankSum=0.641;SNPEFF_AMINO_ACID_CHANGE=A117S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_58625854_58625904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM3D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000483787    GT:AD:DP:GQ:PL    0/1:59,64:123:99:1843,0,1664
3    58625975    rs3749287    C    G    698.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8939;MQ=60.0;MQ0=0;MQRankSum=-0.945;QD=15.18;ReadPosRankSum=0.857;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498347    GT:AD:DP:GQ:PL    0/1:23,23:46:99:728,0,756
3    58631184    rs111621495    G    GAAATA    587.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=28.7341;IndelType=I;MQ=58.19;MQ0=0;QD=73.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358781    GT:AD:DP:GQ:PL    1/1:0,7:8:24.08:630,24,0
3    58641352    rs57504511    C    T    260.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358781    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:294,21,0
3    58870148    rs9826422    T    G    279.33    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=15.52;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479931    GT:AD:DP:GQ:PL    0/1:8,10:18:99:309,0,257
3    59996927    rs4679626    T    C    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488467    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
3    59996969    rs4679627    C    T    255.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488467    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
3    59999690    rs13067835    T    C    1383.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488467    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1416,108,0
3    60898271    rs6793737    G    A    699.42    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.487;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.107;QD=18.41;ReadPosRankSum=1.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468189    GT:AD:DP:GQ:PL    0/1:16,22:38:99:729,0,539
3    60898434    rs11130795    T    C    3725.44    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.13;DB;DP=240;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1476;MQ=59.81;MQ0=0;MQRankSum=-0.377;QD=15.52;ReadPosRankSum=-0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468189    GT:AD:DP:GQ:PL    0/1:112,128:240:99:3725,0,3353
3    61728256    rs680294    G    T    2281.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.27;MQ0=1;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2315,195,0
3    61728564    rs3817452    G    A    2424.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2457,181,0
3    61734539    rs3821880    T    C    646.95    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=3.043;DB;DP=47;Dels=0.0;FS=1.219;HRun=2;HaplotypeScore=1.9025;MQ=58.51;MQ0=0;MQRankSum=1.698;QD=13.76;ReadPosRankSum=-0.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    0/1:22,25:47:99:677,0,622
3    61975382    rs62620047    T    C    808.72    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=2.273;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.46;MQ0=0;MQRankSum=0.137;QD=18.81;ReadPosRankSum=0.609;SNPEFF_AMINO_ACID_CHANGE=Y92H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_61975299_61975478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    0/1:17,26:43:99:839,0,521
3    62110366    rs13065389    C    T    60.89    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=6.09;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    0/1:7,3:10:90.89:91,0,199
3    62188623    rs2063204    A    G    66.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:98,9,0
3    62229553    rs1352882    C    T    1286.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=I787;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_62229481_62229572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1320,99,0
3    62258871    rs35559789    G    A    78.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    0/1:2,3:5:68.24:109,0,68
3    62263116    rs9823242    T    C    133.82    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.529;QD=11.15;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    0/1:7,5:12:99:164,0,242
3    62268609    .    A    G    507.21    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.602;DP=29;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.9578;MQ=58.55;MQ0=0;MQRankSum=-0.766;QD=17.49;ReadPosRankSum=1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295874    GT:AD:DP:GQ:PL    0/1:13,16:29:99:537,0,429
3    62357093    .    C    A    76.46    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DP=13;Dels=0.0;FS=3.123;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=5.88;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FEZF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283268    GT:AD:DP:GQ:PL    0/1:8,5:13:99:106,0,259
3    62431401    rs10708769    AC    A    603.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=206.9556;IndelType=D;MQ=43.56;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:3,17:20:57.11:646,57,0
3    62431415    rs6791296    T    C    482.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4597;MQ=47.87;MQ0=0;QD=17.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,26:27:42.12:515,42,0
3    62476790    rs2367089    G    A    142.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=15.88;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:4,5:9:99:173,0,136
3    62477233    rs35911391    A    AAC    172.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=67.1686;IndelType=I;MQ=64.19;MQ0=0;MQRankSum=1.495;QD=17.29;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:4,5:10:8.56:212,0,9
3    62477699    rs9871763    C    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
3    62498378    rs1376917    G    A    308.11    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.426;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.291;QD=9.94;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:19,12:31:99:338,0,616
3    62535819    rs9813819    C    G    582.31    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.005;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=12.39;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:28,19:47:99:612,0,987
3    62543001    rs9823503    G    T    189.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=21.06;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:3,6:9:83.97:220,0,84
3    62543123    rs4396888    T    C    728.35    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=5.345;DB;DP=50;Dels=0.0;FS=1.164;HRun=0;HaplotypeScore=1.581;MQ=59.63;MQ0=0;MQRankSum=-0.454;QD=14.57;ReadPosRankSum=-1.383;SNPEFF_AMINO_ACID_CHANGE=L570;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_62543080_62543188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:25,24:50:99:758,0,714
3    62556622    rs833663    A    G    3623.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8053;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3623,271,0
3    62571037    rs2659467    G    A    761.11    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.722;MQ=60.0;MQ0=0;MQRankSum=0.216;QD=12.48;ReadPosRankSum=0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:35,26:61:99:791,0,1060
3    62611998    rs2600853    C    T    124.57    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.437;QD=9.58;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:8,5:13:99:155,0,285
3    62612013    rs2248008    C    T    685.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:718,54,0
3    62612145    rs2248013    C    A    1893.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1926,141,0
3    62612195    rs2248019    G    T    719.18    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.234;DB;DP=56;Dels=0.0;FS=7.843;HRun=0;HaplotypeScore=1.9891;MQ=59.17;MQ0=0;MQRankSum=1.526;QD=12.84;ReadPosRankSum=0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:30,26:56:99:749,0,939
3    62612280    rs2367310    C    T    740.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.87;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:773,57,0
3    62612294    rs2367311    T    C    629.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:663,51,0
3    62612309    rs2367312    G    C    455.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:488,36,0
3    62612342    rs2248023    T    C    249.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=27.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:282,21,0
3    62612385    rs1349591    G    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
3    62631553    rs4588354    G    T    965.18    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.098;DB;DP=61;Dels=0.0;FS=1.42;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.542;QD=15.82;ReadPosRankSum=-1.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:29,32:61:99:995,0,900
3    62636826    rs4688302    C    T    1017.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1051,78,0
3    62647928    rs6770658    A    G    174.31    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.24;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.395;QD=9.17;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    0/1:12,7:19:99:204,0,445
3    62739092    rs478123    A    G    1605.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283269    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1639,123,0
3    63320283    rs4688395    T    C    295.04    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=3.266;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=1.156;QD=17.36;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYNPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478300    GT:AD:DP:GQ:PL    0/1:6,11:17:99:325,0,189
3    63320314    rs4234675    T    G    944.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYNPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478300    GT:AD:DP:GQ:PL    1/1:0,32:33:84.22:978,84,0
3    63320504    rs34979712    CT    C    1143.33    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=6.261;DB;DP=63;FS=2.133;HRun=3;HaplotypeScore=154.4667;IndelType=D;MQ=60.15;MQ0=0;MQRankSum=0.593;QD=18.15;ReadPosRankSum=1.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYNPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478300    GT:AD:DP:GQ:PL    0/1:26,37:63:99:1182,0,913
3    63320804    rs6772709    G    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYNPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478300    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    63320819    rs6772716    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYNPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478300    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    63816661    .    A    ATTGT    711.98    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DP=13;FS=0.0;HRun=0;HaplotypeScore=40.287;IndelType=I;MQ=53.4;MQ0=0;MQRankSum=-1.099;QD=54.77;ReadPosRankSum=-1.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295899    GT:AD:DP:GQ:PL    0/1:3,10:13:99:751,0,127
3    63817430    rs2291533    G    C    1324.50    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=0.926;DB;DP=102;Dels=0.0;FS=0.785;HRun=0;HaplotypeScore=0.9665;MQ=59.82;MQ0=0;MQRankSum=-0.732;QD=12.99;ReadPosRankSum=-0.443;SNPEFF_AMINO_ACID_CHANGE=Q253H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_63817356_63817520;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295896    GT:AD:DP:GQ:PL    0/1:55,47:102:99:1354,0,1732
3    63821914    rs2637982    C    G    1577.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.48;MQ0=0;QD=35.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491896    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1610,123,0
3    63825060    rs2637981    C    T    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295896    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
3    63825249    rs138554894    TTTGA    T    689.26    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=4.223;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=174.48;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=1.346;QD=18.63;ReadPosRankSum=0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295896    GT:AD:DP:GQ:PL    0/1:23,14:37:99:728,0,1719
3    63825640    rs2678352    T    C    186.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=23.3;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295896    GT:AD:DP:GQ:PL    0/1:2,6:8:59.91:216,0,60
3    63967900    rs1053338    A    G    1132.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.92;DB;DP=70;Dels=0.0;FS=8.347;HRun=0;HaplotypeScore=0.5784;MQ=59.64;MQ0=0;MQRankSum=0.398;QD=16.18;ReadPosRankSum=-0.172;SNPEFF_AMINO_ACID_CHANGE=K119R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_63967862_63968121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000484332    GT:AD:DP:GQ:PL    0/1:30,40:70:99:1162,0,933
3    63976145    rs2241821    G    A    172.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=14.34;ReadPosRankSum=1.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466529    GT:AD:DP:GQ:PL    0/1:6,6:12:99:202,0,209
3    63981635    rs3733125    C    T    591.14    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.641;DB;DP=43;Dels=0.0;FS=1.239;HRun=1;HaplotypeScore=2.0641;MQ=59.03;MQ0=0;MQRankSum=0.876;QD=13.75;ReadPosRankSum=-0.954;SNPEFF_AMINO_ACID_CHANGE=L568;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_63981181_63982159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000484332    GT:AD:DP:GQ:PL    0/1:21,22:43:99:621,0,583
3    63982082    rs3774729    G    A    3981.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DB;DP=118;Dels=0.0;FS=3.81;HRun=0;HaplotypeScore=1.9755;MQ=59.61;MQ0=0;MQRankSum=-0.122;QD=33.74;ReadPosRankSum=1.216;SNPEFF_AMINO_ACID_CHANGE=V33M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_63981986_63982159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522345    GT:AD:DP:GQ:PL    1/1:1,116:118:99:3982,264,0
3    63999322    rs3816157    G    A    237.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=24;Dels=0.0;FS=2.706;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.398;QD=9.9;ReadPosRankSum=0.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497315    GT:AD:DP:GQ:PL    0/1:16,8:24:99:268,0,516
3    64004409    rs11376250    C    CA    270.33    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.416;DB;DP=26;FS=1.76;HRun=8;HaplotypeScore=56.6797;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=10.4;ReadPosRankSum=-0.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478185    GT:AD:DP:GQ:PL    0/1:16,10:26:99:309,0,260
3    64004819    rs2578011    C    T    285.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.038;DB;DP=20;Dels=0.0;FS=4.32;HRun=0;HaplotypeScore=0.6651;MQ=58.84;MQ0=0;MQRankSum=0.113;QD=14.27;ReadPosRankSum=-2.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478185    GT:AD:DP:GQ:PL    0/1:10,10:20:99:315,0,317
3    64005226    rs2888013    A    G    30.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295901    GT:AD:DP:GQ:PL    0/1:4,2:6:60.57:61,0,144
3    64009432    rs28372804    AT    A    463.37    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.972;DB;DP=26;FS=1.657;HRun=6;HaplotypeScore=68.5868;IndelType=D;MQ=59.11;MQ0=0;MQRankSum=-0.528;QD=17.82;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394431    GT:AD:DP:GQ:PL    0/1:8,18:26:99:502,0,238
3    64009508    rs40610    T    C    165.45    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=16;Dels=0.0;FS=6.726;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=10.34;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=N2D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_64009481_64009658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394431    GT:AD:DP:GQ:PL    0/1:9,7:16:99:195,0,221
3    64072571    rs7636957    C    G    1352.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.46;MQ0=0;QD=31.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-129B22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482609    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1385,102,0
3    64072820    rs254856    T    C    1455.18    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=3.682;DB;DP=78;Dels=0.0;FS=2.627;HRun=0;HaplotypeScore=0.734;MQ=59.41;MQ0=0;MQRankSum=-1.036;QD=18.66;ReadPosRankSum=-0.367;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-129B22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482609    GT:AD:DP:GQ:PL    0/1:31,47:78:99:1485,0,946
3    64133350    rs27673    A    G    1806.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.58;MQ0=0;QD=32.84;SNPEFF_AMINO_ACID_CHANGE=D272;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_64132506_64133378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295902    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1839,135,0
3    64138716    rs35843    A    G    1016.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498162    GT:AD:DP:GQ:PL    1/1:0,30:30:90.26:1049,90,0
3    64142859    rs17720698    C    T    361.94    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.9;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3337;MQ=59.17;MQ0=0;MQRankSum=-0.643;QD=12.93;ReadPosRankSum=0.694;SNPEFF_AMINO_ACID_CHANGE=P193;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_64142838_64143041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295902    GT:AD:DP:GQ:PL    0/1:13,15:28:99:392,0,341
3    64145493    rs11720610    G    A    636.17    PASS    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=2.985;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.284;QD=26.51;ReadPosRankSum=-0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295902    GT:AD:DP:GQ:PL    0/1:5,19:24:99:666,0,113
3    64145510    rs76720468    G    A    779.22    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.172;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-2.456;QD=22.92;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295902    GT:AD:DP:GQ:PL    0/1:8,26:34:99:809,0,238
3    64145759    rs2306380    T    C    1151.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.08;DB;DP=70;Dels=0.0;FS=3.541;HRun=0;HaplotypeScore=3.6408;MQ=59.67;MQ0=0;MQRankSum=0.303;QD=16.45;ReadPosRankSum=0.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295902    GT:AD:DP:GQ:PL    0/1:30,40:70:99:1181,0,829
3    64145913    rs26942    T    A    75.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.97;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295902    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:106,0,30
3    64184343    rs696016    C    T    239    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.55;MQ0=0;MQRankSum=-0.683;QD=14.94;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295902    GT:AD:DP:GQ:PL    0/1:8,8:16:99:269,0,282
3    64184397    rs696017    G    T    358.96    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.723;DB;DP=30;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=-0.062;QD=11.97;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295902    GT:AD:DP:GQ:PL    0/1:16,14:30:99:389,0,505
3    64518994    rs1017537    T    C    1047.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1080,84,0
3    64519156    rs11717554    C    T    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
3    64525171    rs11130968    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    64525177    rs11130969    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    64526610    rs11130970    G    A    117.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.45;MQ0=0;QD=29.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
3    64526651    rs3841969    CCAATGTG    C    348.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=76.7471;IndelType=D;MQ=48.94;MQ0=0;QD=49.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:390,18,0
3    64526717    rs3796384    G    C    584.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.76;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:618,45,0
3    64526942    rs3796383    A    C    3152.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=59.54;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3186,244,0
3    64527321    rs1373163    T    C    1916.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.55;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1950,147,0
3    64527336    rs1036919    C    T    1617.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9957;MQ=59.05;MQ0=0;QD=36.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1650,123,0
3    64527378    rs1036918    G    A    1264.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.76;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1298,99,0
3    64527465    rs1036917    C    T    1937.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1971,144,0
3    64527835    rs11706020    G    T    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
3    64532254    rs9311895    A    G    36.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482490    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
3    64554254    rs7635677    T    C    427.92    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.164;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=10.7;ReadPosRankSum=1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:23,17:40:99:458,0,755
3    64580169    rs13320542    C    T    459.41    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.846;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=2.024;QD=10.94;ReadPosRankSum=1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:25,17:42:99:489,0,846
3    64589532    .    G    A    791.17    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=2.375;DP=83;Dels=0.0;FS=2.211;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.547;QD=9.53;ReadPosRankSum=-0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:48,34:83:99:821,0,1257
3    64589851    rs9985304    A    G    270.96    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.246;QD=12.9;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:10,11:21:99:301,0,351
3    64600829    rs56869336    C    T    199.22    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=13.28;ReadPosRankSum=0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:7,8:15:99:229,0,232
3    64601550    rs4589926    T    C    713.17    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.137;QD=16.59;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:19,24:43:99:743,0,623
3    64617042    rs6768487    G    C    424.43    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.07;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.457;QD=18.45;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:10,13:23:99:454,0,331
3    64617070    rs6445420    C    T    456.99    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.553;DB;DP=31;Dels=0.0;FS=2.393;HRun=0;HaplotypeScore=0.8667;MQ=59.25;MQ0=0;MQRankSum=-0.139;QD=14.74;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:14,17:31:99:487,0,415
3    64617699    rs7640062    A    G    151.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=16.81;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:3,6:9:95.04:181,0,95
3    64619048    rs11717158    C    T    831.78    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.614;DB;DP=63;Dels=0.0;FS=7.135;HRun=0;HaplotypeScore=1.8319;MQ=60.0;MQ0=0;MQRankSum=-0.355;QD=13.2;ReadPosRankSum=0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    0/1:34,29:63:99:862,0,1034
3    64640206    rs67158962    TA    T    3762.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;FS=0.0;HRun=4;HaplotypeScore=324.3288;IndelType=D;MQ=60.26;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:5,107:112:99:3763,316,0
3    64667059    rs73124286    G    T    429.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=28.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295903    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:462,36,0
3    65361203    rs13321366    C    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468159    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
3    65361383    rs3836224    A    AAG    809.05    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.169;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=150.4788;IndelType=I;MQ=61.1;MQ0=0;MQRankSum=0.465;QD=16.51;ReadPosRankSum=0.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468159    GT:AD:DP:GQ:PL    0/1:29,20:49:99:848,0,514
3    65372945    rs75360857    C    A    409.13    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.274;DB;DP=30;Dels=0.0;FS=2.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.274;QD=13.64;ReadPosRankSum=-1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    0/1:16,14:30:99:439,0,487
3    65415157    rs147479871    TA    T    266.64    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=4.675;DB;DP=39;FS=6.855;HRun=10;HaplotypeScore=95.4363;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.291;QD=6.84;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470990    GT:AD:DP:GQ:PL    0/1:23,16:39:99:306,0,577
3    65416648    rs4688566    C    A    218.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:251,18,0
3    65425168    rs7639549    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    65425280    rs4618170    A    G    296.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:329,27,0
3    65425393    rs6445477    T    C    1622.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1656,123,0
3    65433406    rs6768607    T    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=19.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464060    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
3    65433434    rs6779957    A    G    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464060    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
3    65456198    rs57455654    G    GA    187.17    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=33;FS=0.0;HRun=12;HaplotypeScore=219.8984;IndelType=I;MQ=58.39;MQ0=0;MQRankSum=0.769;QD=5.67;ReadPosRankSum=-1.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    0/1:23,9:33:99:226,0,179
3    65464522    rs11409972    G    GT    96.89    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=11;FS=0.0;HRun=9;HaplotypeScore=22.0475;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=0.103;QD=8.81;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    0/1:6,5:11:99:136,0,100
3    65464625    rs7636096    G    A    68.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    1/1:0,3:3:9:101,9,0
3    65479068    rs7641222    A    C    376.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.234;QD=20.89;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    0/1:6,12:18:99:406,0,185
3    65583600    rs57059846    TGG    T    102.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=58.3069;IndelType=D;MQ=58.43;MQ0=0;MQRankSum=1.133;QD=8.5;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    0/1:6,6:12:99:141,0,140
3    65607592    rs112243102    T    TCA    337.65    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.474;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=126.5877;IndelType=I;MQ=55.49;MQ0=0;MQRankSum=-1.107;QD=17.77;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    0/1:10,8:19:1.94:375,0,2
3    65607637    rs3749455    A    G    553.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.91;MQ0=0;QD=24.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    1/1:0,23:23:51.13:586,51,0
3    66023592    rs28696109    A    G    436.21    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.586;DB;DP=35;Dels=0.0;FS=1.884;HRun=2;HaplotypeScore=1.7653;MQ=58.67;MQ0=0;MQRankSum=1.606;QD=12.46;ReadPosRankSum=0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330909    GT:AD:DP:GQ:PL    0/1:16,19:35:99:466,0,523
3    66293766    rs66918103    T    C    2064.66    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.03;DB;DP=124;Dels=0.0;FS=2.36;HRun=1;HaplotypeScore=5.1031;MQ=59.17;MQ0=0;MQRankSum=0.363;QD=16.65;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336733    GT:AD:DP:GQ:PL    0/1:52,72:124:99:2095,0,1796
3    66293851    rs1678092    T    C    165.28    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=9.72;ReadPosRankSum=2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336733    GT:AD:DP:GQ:PL    0/1:10,7:17:99:195,0,366
3    66419942    rs1129179    A    G    79.67    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.633;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.03;MQ0=0;MQRankSum=-0.567;QD=3.32;ReadPosRankSum=0.633;SNPEFF_AMINO_ACID_CHANGE=A115;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_66419902_66419966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336733    GT:AD:DP:GQ:PL    0/1:18,6:24:99:110,0,637
3    66419956    rs13874    C    T    101.68    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.833;DB;DP=24;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.433;QD=4.24;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=T120M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_66419902_66419966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336733    GT:AD:DP:GQ:PL    0/1:18,6:24:99:132,0,617
3    66421147    rs332378    T    C    33.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.63;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484768    GT:AD:DP:GQ:PL    0/1:3,2:5:63.16:63,0,111
3    66427885    rs231276    A    G    64.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.83;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273261    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:94,0,68
3    66428282    rs1046844    C    T    843.30    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5647;MQ=59.63;MQ0=0;MQRankSum=0.49;QD=13.6;ReadPosRankSum=1.902;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273261    GT:AD:DP:GQ:PL    0/1:33,29:62:99:873,0,1061
3    66430811    rs2279290    T    G    1086.64    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.149;DB;DP=80;Dels=0.0;FS=1.94;HRun=3;HaplotypeScore=1.8924;MQ=60.0;MQ0=0;MQRankSum=0.77;QD=13.58;ReadPosRankSum=1.752;SNPEFF_AMINO_ACID_CHANGE=Q1030P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_66429221_66430913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383703    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1117,0,1183
3    66432276    rs2242284    A    G    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336733    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
3    66432680    rs332371    A    G    1292.65    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.075;DB;DP=100;Dels=0.0;FS=3.772;HRun=1;HaplotypeScore=1.6553;MQ=59.31;MQ0=0;MQRankSum=0.639;QD=12.93;ReadPosRankSum=1.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336733    GT:AD:DP:GQ:PL    0/1:51,49:100:99:1323,0,1457
3    66433176    rs1809444    T    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336733    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    66433676    rs900171    A    G    222.78    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.033;DB;DP=22;Dels=0.0;FS=1.768;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.099;QD=10.13;ReadPosRankSum=-1.22;SNPEFF_AMINO_ACID_CHANGE=L644;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_66433406_66433825;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383702    GT:AD:DP:GQ:PL    0/1:12,10:22:99:253,0,420
3    66436891    rs13063913    T    C    61.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=12.31;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273261    GT:AD:DP:GQ:PL    0/1:2,3:5:59.62:92,0,60
3    66444615    rs6793110    G    A    299.37    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=24.95;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=S342;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_66444464_66444627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383702    GT:AD:DP:GQ:PL    0/1:1,11:12:12.13:329,0,12
3    66455797    rs3796148    T    C    92.37    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=18.47;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491821    GT:AD:DP:GQ:PL    0/1:1,4:5:21.09:122,0,21
3    66463251    rs4856924    G    A    295.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475366    GT:AD:DP:GQ:PL    1/1:0,12:12:27.05:329,27,0
3    66465176    .    A    G    177.85    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.87;MQ0=0;MQRankSum=-1.031;QD=16.17;ReadPosRankSum=0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475366    GT:AD:DP:GQ:PL    0/1:5,6:11:99:208,0,169
3    66465259    rs4856928    T    C    624.46    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.703;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.36;MQ0=0;MQRankSum=-0.462;QD=17.35;ReadPosRankSum=0.875;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475366    GT:AD:DP:GQ:PL    0/1:16,20:36:99:654,0,422
3    66467365    rs6786813    G    A    109.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.15;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273261    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,144
3    66550756    rs1403625    G    C    170.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=L26V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_66550614_66551356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273261    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
3    66550762    rs1403626    G    C    159.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_AMINO_ACID_CHANGE=L24V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_66550614_66551356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273261    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:193,15,0
3    67425983    rs1065400    C    T    143.10    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-0.38;QD=11.93;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUCLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493112    GT:AD:DP:GQ:PL    0/1:7,5:12:99:173,0,245
3    67426125    rs1065399    C    T    849.82    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.8;MQ0=0;MQRankSum=-1.747;QD=13.71;ReadPosRankSum=-0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUCLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493112    GT:AD:DP:GQ:PL    0/1:34,28:62:99:880,0,1074
3    67451037    rs68010988    A    G    171.17    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.518;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.124;QD=9.01;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUCLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307227    GT:AD:DP:GQ:PL    0/1:11,8:19:99:201,0,353
3    67548852    rs7630024    G    A    162.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUCLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307227    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
3    68194293    rs1595493    G    A    4013.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.59;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478136    GT:AD:DP:GQ:PL    1/1:0,112:112:99:4013,292,0
3    68606548    rs7616164    G    T    480.76    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.614;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7323;MQ=59.48;MQ0=0;MQRankSum=-0.227;QD=10.93;ReadPosRankSum=1.826;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:26,18:44:99:511,0,833
3    68606690    rs9837106    T    A    68.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.937;QD=9.8;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,3:7:98.60:99,0,144
3    68683849    rs62246092    A    C    437.91    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.406;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.292;QD=11.52;ReadPosRankSum=0.382;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC096922.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390806    GT:AD:DP:GQ:PL    0/1:21,17:38:99:468,0,732
3    68684050    rs9867648    A    G    1230.27    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=2.292;DB;DP=89;Dels=0.0;FS=0.842;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.115;QD=13.82;ReadPosRankSum=-0.218;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC096922.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390806    GT:AD:DP:GQ:PL    0/1:50,39:89:99:1260,0,1669
3    68686222    rs3860535    G    A    68.38    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.53;MQ0=4;QD=8.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC096922.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390806    GT:AD:DP:GQ:PL    1/1:0,8:8:9.02:100,9,0
3    68782213    rs6549143    A    G    1167.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295569    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1200,90,0
3    68787954    rs7626497    C    T    86.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295569    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
3    68788363    rs1504301    G    T    2729.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295569    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2763,202,0
3    68788465    rs1504300    G    T    631.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295569    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:664,48,0
3    69025792    rs71618257    C    CGTGTGT    546.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=79.6515;IndelType=I;MQ=52.9;MQ0=0;QD=39.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403140    GT:AD:DP:GQ:PL    1/1:5,9:14:27.08:588,27,0
3    69036524    rs11350720    GA    G    40.48    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=11;FS=0.0;HRun=13;HaplotypeScore=67.8882;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=-0.47;QD=3.68;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    0/1:6,5:11:79.51:80,0,116
3    69036678    rs4855540    G    C    52.64    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.441;DB;DP=17;Dels=0.0;FS=2.667;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.441;QD=3.1;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    0/1:14,3:17:82.64:83,0,417
3    69036707    rs4855542    G    A    329.68    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=0.752;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.107;QD=25.36;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    0/1:2,11:13:47.87:360,0,48
3    69037633    rs9310136    G    C    247.25    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=24;Dels=0.0;FS=9.791;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.656;QD=10.3;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    0/1:15,9:24:99:277,0,502
3    69038217    rs4855543    A    G    662.35    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.237;DB;DP=33;Dels=0.0;FS=3.724;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.419;QD=20.07;ReadPosRankSum=1.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    0/1:14,19:33:99:692,0,485
3    69047141    rs4855544    G    A    334.73    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=1.764;DB;DP=31;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=10.8;ReadPosRankSum=2.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    0/1:20,11:31:99:365,0,554
3    69053447    rs9860095    A    T    277.82    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=18.52;ReadPosRankSum=-1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424374    GT:AD:DP:GQ:PL    0/1:6,9:15:99:308,0,206
3    69054266    rs11417320    A    AT    497.63    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.695;DB;DP=37;FS=7.084;HRun=1;HaplotypeScore=187.3436;IndelType=I;MQ=56.15;MQ0=0;MQRankSum=-0.258;QD=13.45;ReadPosRankSum=-0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424374    GT:AD:DP:GQ:PL    0/1:21,15:37:99:537,0,569
3    69054341    rs6781612    T    C    920.01    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=1.043;QD=14.84;ReadPosRankSum=0.693;SNPEFF_AMINO_ACID_CHANGE=R155;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_69054291_69054385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    0/1:26,36:62:99:950,0,757
3    69058783    rs56761230    C    T    201.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.155;DB;DP=20;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.8667;MQ=58.84;MQ0=0;MQRankSum=-0.887;QD=10.08;ReadPosRankSum=0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    0/1:12,8:20:99:232,0,369
3    69059087    rs111531881    A    C    47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7321;MQ=51.77;MQ0=0;MQRankSum=0.751;QD=3.92;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295571    GT:AD:DP:GQ:PL    1/1:4,8:12:9:79,9,0
3    69073410    rs3772976    G    A    214.43    HaplotypeScoreFilter13    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=48;Dels=0.0;FS=2.418;HRun=0;HaplotypeScore=19.4167;MQ=56.28;MQ0=0;MQRankSum=-0.163;QD=4.47;ReadPosRankSum=-0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489370    GT:AD:DP:GQ:PL    0/1:25,20:48:99:244,0,441
3    69073419    .    GTT    G    82.41    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.089;DP=40;FS=0.0;HRun=16;HaplotypeScore=287.7699;IndelType=D;MQ=54.88;MQ0=0;MQRankSum=0.876;QD=2.06;ReadPosRankSum=0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489370    GT:AD:DP:GQ:PL    0/1:22,7:40:99:121,0,441
3    69082657    rs937859    T    C    1124.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356248    GT:AD:DP:GQ:PL    1/1:0,33:33:87.26:1158,87,0
3    69082873    rs937858    G    T    789.37    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.736;DB;DP=44;Dels=0.0;FS=10.636;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.16;QD=17.94;ReadPosRankSum=0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356248    GT:AD:DP:GQ:PL    0/1:19,25:44:99:819,0,489
3    69084062    rs2055685    G    C    283.07    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=0.137;DB;DP=37;Dels=0.0;FS=5.027;HRun=0;HaplotypeScore=2.6205;MQ=59.38;MQ0=0;MQRankSum=0.137;QD=7.65;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356248    GT:AD:DP:GQ:PL    0/1:25,11:37:99:313,0,881
3    69084161    rs2271121    C    A    1500.74    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.145;DB;DP=140;Dels=0.0;FS=6.973;HRun=3;HaplotypeScore=0.8941;MQ=59.17;MQ0=0;MQRankSum=1.093;QD=10.72;ReadPosRankSum=1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356248    GT:AD:DP:GQ:PL    0/1:78,62:140:99:1531,0,2486
3    69084434    rs2271122    T    C    293.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356248    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:327,24,0
3    69088918    .    T    TC    570.06    PASS    AC=2;AF=1.00;AN=2;DP=13;FS=0.0;HRun=0;HaplotypeScore=49.1608;IndelType=I;MQ=60.83;MQ0=0;QD=43.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438636    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:612,39,0
3    69088944    rs67036817    T    C    126.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438636    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:159,12,0
3    69093598    rs2271118    T    C    1213.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356248    GT:AD:DP:GQ:PL    1/1:0,33:33:93.31:1246,93,0
3    69096614    rs2292199    G    A    3307.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=36.34;SNPEFF_AMINO_ACID_CHANGE=S327;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_69096500_69097284;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356248    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3307,244,0
3    69100890    rs34175383    G    A    77.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.72;ReadPosRankSum=-1.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349511    GT:AD:DP:GQ:PL    0/1:6,4:10:99:107,0,206
3    69104695    rs6549179    T    A    1374.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349511    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1407,108,0
3    69104752    rs6549180    C    T    496.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349511    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:529,39,0
3    69106119    rs35361133    A    AT    554.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=36.1929;IndelType=I;MQ=58.66;MQ0=0;QD=36.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461522    GT:AD:DP:GQ:PL    1/1:1,14:15:42.14:596,42,0
3    69106187    rs1866262    G    A    403.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461522    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:436,33,0
3    69106304    rs59405823    C    T    1430.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.115;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9997;MQ=59.62;MQ0=0;MQRankSum=1.039;QD=23.84;ReadPosRankSum=0.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461522    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1463,117,0
3    69106305    rs1866265    C    G    1428.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.224;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9997;MQ=59.63;MQ0=0;MQRankSum=-1.062;QD=23.04;ReadPosRankSum=-0.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461522    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1461,117,0
3    69111488    rs6800465    A    T    39.21    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.84;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349511    GT:AD:DP:GQ:PL    0/1:2,3:5:66.54:69,0,67
3    69112049    rs2289245    C    T    605.47    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.879;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.814;QD=14.08;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349511    GT:AD:DP:GQ:PL    0/1:22,21:43:99:635,0,795
3    69153854    rs7038    G    T    92.51    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.07;MQ0=0;MQRankSum=0.825;QD=7.12;ReadPosRankSum=-0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL6IP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470936    GT:AD:DP:GQ:PL    0/1:9,4:13:99:123,0,255
3    69225588    rs11128118    T    G    1588.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1621,138,0
3    69225875    rs9872199    T    A    911.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:945,72,0
3    69225911    rs9868107    A    G    562.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:596,45,0
3    69229976    rs12054011    G    C    1329.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1362,102,0
3    69230026    rs9818314    T    C    2532.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.69;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2566,196,0
3    69230061    rs9831516    G    A    3686.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=35.79;SNPEFF_AMINO_ACID_CHANGE=S599L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_69230050_69230861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000478263    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3686,268,0
3    69230801    rs9836305    G    A    1576.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.782;MQ=58.41;MQ0=0;QD=35.83;SNPEFF_AMINO_ACID_CHANGE=H352;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_69230050_69230861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000478263    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1610,123,0
3    69242770    rs11360023    CA    C    1433.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=11;HaplotypeScore=189.3674;IndelType=D;MQ=60.49;MQ0=0;QD=22.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462512    GT:AD:DP:GQ:PL    1/1:2,61:63:99:1476,180,0
3    69243923    rs9849435    G    A    37.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=18.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462512    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
3    69244162    rs9853587    G    A    2257.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.462;DB;DP=65;Dels=0.0;FS=4.445;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=1.678;QD=34.73;ReadPosRankSum=-1.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462512    GT:AD:DP:GQ:PL    1/1:1,64:65:99:2290,135,0
3    69245454    rs9310141    T    C    7706.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=227;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6927;MQ=58.98;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=T107A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_69245406_69245547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000462512    GT:AD:DP:GQ:PL    1/1:0,227:227:99:7707,578,0
3    69245623    rs73095903    A    G    303.52    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.373;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.58;MQ0=0;MQRankSum=0.887;QD=10.47;ReadPosRankSum=0.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470070    GT:AD:DP:GQ:PL    0/1:19,10:29:99:334,0,626
3    69245689    rs112965837    A    AAAAAC    419.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=72.5505;IndelType=I;MQ=57.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470070    GT:AD:DP:GQ:PL    1/1:6,6:12:18.06:461,18,0
3    69245910    rs9823592    C    A    838.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470070    GT:AD:DP:GQ:PL    1/1:0,28:28:78.21:871,78,0
3    69245949    rs9860235    G    C    1676.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.423;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.423;QD=37.26;ReadPosRankSum=-0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470070    GT:AD:DP:GQ:PL    1/1:1,44:45:90.65:1710,91,0
3    69246152    rs13059488    A    G    4971.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.297;DB;DP=142;Dels=0.0;FS=3.105;HRun=1;HaplotypeScore=2.899;MQ=59.38;MQ0=0;MQRankSum=0.569;QD=35.01;ReadPosRankSum=-0.668;SNPEFF_AMINO_ACID_CHANGE=L277;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_69246051_69246189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542259    GT:AD:DP:GQ:PL    1/1:1,141:142:99:4971,349,0
3    69246274    rs13059687    A    G    2525.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4433;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470070    GT:AD:DP:GQ:PL    1/1:0,75:77:99:2558,202,0
3    69246413    rs6549187    T    C    129.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470070    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
3    69247668    rs4624565    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483668    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    69265291    rs7643175    T    C    205.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.94;MQ0=0;QD=34.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493880    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
3    69265304    rs77475566    C    CA    165.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=8;HaplotypeScore=40.0088;IndelType=I;MQ=57.94;MQ0=0;QD=27.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493880    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:208,18,0
3    69265371    rs62254460    G    C    513.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=36.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493880    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:546,42,0
3    69267578    rs4855301    A    T    825.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:858,63,0
3    69271032    rs62254461    G    A    1074.43    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.809;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.464;QD=15.8;ReadPosRankSum=-0.228;SNPEFF_AMINO_ACID_CHANGE=L127;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_69271009_69271074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493880    GT:AD:DP:GQ:PL    0/1:30,38:68:99:1104,0,759
3    69271206    rs6549189    T    C    293.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460709    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
3    69273656    rs9848940    G    T    509.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;QD=33.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460709    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:543,42,0
3    69274066    rs9849591    G    A    84.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=21.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
3    69299233    rs4361282    C    G    2577.83    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=197;Dels=0.0;FS=0.524;HRun=0;HaplotypeScore=0.9958;MQ=59.25;MQ0=0;MQRankSum=-1.243;QD=13.09;ReadPosRankSum=-1.156;SNPEFF_AMINO_ACID_CHANGE=E119D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_69299194_69299250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000460709    GT:AD:DP:GQ:PL    0/1:101,96:197:99:2608,0,3006
3    69362706    rs1483895    C    T    55.09    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=6.89;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    0/1:5,3:8:85.08:85,0,150
3    69362722    rs2314992    C    A    82.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398540    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:112,0,30
3    71015021    rs7638391    G    T    4078    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=59.61;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318789    GT:AD:DP:GQ:PL    1/1:0,118:118:99:4078,310,0
3    71019750    rs9874207    T    C    254.07    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=18.15;ReadPosRankSum=0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318789    GT:AD:DP:GQ:PL    0/1:6,8:14:99:284,0,183
3    71025935    rs13068094    C    T    96.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=24.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318789    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:129,12,0
3    71101580    rs4555486    A    G    72.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.16;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318789    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,102
3    71247257    rs939845    A    G    289.35    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.239;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.066;QD=7.42;ReadPosRankSum=-1.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318779    GT:AD:DP:GQ:PL    0/1:25,14:39:99:319,0,838
3    71247572    rs56850311    A    T    294.30    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.456;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8886;MQ=58.59;MQ0=0;MQRankSum=-0.539;QD=8.92;ReadPosRankSum=1.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318779    GT:AD:DP:GQ:PL    0/1:17,15:33:99:324,0,464
3    71247576    rs9855825    A    T    191.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.022;MQ=59.17;MQ0=0;MQRankSum=0.26;QD=6.84;ReadPosRankSum=-2.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318779    GT:AD:DP:GQ:PL    0/1:13,13:28:99:222,0,335
3    72495593    rs11460842    T    TA    106.36    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=26;FS=0.0;HRun=17;HaplotypeScore=176.038;IndelType=I;MQ=39.42;MQ0=0;MQRankSum=-0.898;QD=4.09;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYBP;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,10:26:1.29:144,0,1
3    72495777    rs13066407    C    G    714.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYBP;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:747,60,0
3    72495945    rs13088771    A    G    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYBP;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
3    72873729    rs17690898    C    G    536.63    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.026;DB;DP=38;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=0.9332;MQ=59.51;MQ0=0;MQRankSum=0.059;QD=14.12;ReadPosRankSum=0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SHQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325599    GT:AD:DP:GQ:PL    0/1:21,17:38:99:567,0,583
3    72957734    rs113101074    C    CAGTGTTTA    2365.88    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.265;DB;DP=41;FS=1.519;HRun=0;HaplotypeScore=229.6512;IndelType=I;MQ=48.68;MQ0=0;MQRankSum=-4.062;QD=57.7;ReadPosRankSum=1.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389617    GT:AD:DP:GQ:PL    0/1:25,15:41:99:2405,0,1139
3    72971341    rs1502755    C    T    2619.09    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.813;DB;DP=230;Dels=0.0;FS=11.844;HRun=2;HaplotypeScore=1.9436;MQ=59.92;MQ0=0;MQRankSum=-0.931;QD=11.39;ReadPosRankSum=-0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389617    GT:AD:DP:GQ:PL    0/1:126,103:230:99:2649,0,3890
3    72971686    rs62249904    G    A    67.08    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-0.573;QD=7.45;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389617    GT:AD:DP:GQ:PL    0/1:6,3:9:97.08:97,0,223
3    73004057    rs4455270    T    C    38.04    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.592;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=2.93;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389617    GT:AD:DP:GQ:PL    0/1:10,3:13:68.03:68,0,373
3    73004157    rs1532190    T    G    556.51    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.19;DB;DP=44;Dels=0.0;FS=8.952;HRun=0;HaplotypeScore=0.9665;MQ=59.58;MQ0=0;MQRankSum=0.971;QD=12.65;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389617    GT:AD:DP:GQ:PL    0/1:25,19:44:99:586,0,867
3    73016635    rs3732442    C    G    607.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=40;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.149;QD=15.19;ReadPosRankSum=-1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389617    GT:AD:DP:GQ:PL    0/1:20,20:40:99:638,0,688
3    73016974    rs3821379    A    G    628.65    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.783;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.716;QD=16.54;ReadPosRankSum=-1.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389617    GT:AD:DP:GQ:PL    0/1:17,20:38:99:659,0,605
3    73023934    rs7610684    G    A    154.99    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=22.14;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389617    GT:AD:DP:GQ:PL    0/1:2,5:7:41.94:185,0,42
3    73024350    rs1052278    C    A    1503.13    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.232;DB;DP=96;Dels=0.0;FS=2.459;HRun=1;HaplotypeScore=1.3123;MQ=58.99;MQ0=0;MQRankSum=-0.433;QD=15.66;ReadPosRankSum=1.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491839    GT:AD:DP:GQ:PL    0/1:45,51:96:99:1533,0,1385
3    73045871    rs9812514    A    G    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491839    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
3    73096591    rs71277513    A    ATAAT    546.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=19.1954;IndelType=I;MQ=46.63;MQ0=0;QD=78.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295862    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:588,21,0
3    73110076    rs726029    G    A    457.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476505    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:491,39,0
3    73111368    rs2231924    T    C    633.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.53;SNPEFF_AMINO_ACID_CHANGE=S46P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_73110810_73112488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBLN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533473    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:666,57,0
3    73111809    rs2231926    A    G    1937.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=I193V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_73110810_73112488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBLN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533473    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1971,156,0
3    73111973    rs2231928    A    G    5075.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.913;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3263;MQ=59.45;MQ0=0;MQRankSum=-0.787;QD=30.21;ReadPosRankSum=-1.48;SNPEFF_AMINO_ACID_CHANGE=P247;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_73110810_73112488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBLN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533473    GT:AD:DP:GQ:PL    1/1:1,167:168:99:5076,365,0
3    73111998    rs1060584    C    T    5895.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.971;DB;DP=186;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4972;MQ=59.5;MQ0=0;MQRankSum=1.256;QD=31.7;ReadPosRankSum=-0.19;SNPEFF_AMINO_ACID_CHANGE=L256F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_73110810_73112488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBLN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533473    GT:AD:DP:GQ:PL    1/1:1,184:186:99:5896,406,0
3    73112919    rs3841614    T    TA    632.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=44.1688;IndelType=I;MQ=60.72;MQ0=0;QD=42.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533473    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:675,45,0
3    73112974    rs11708712    A    T    401.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533473    GT:AD:DP:GQ:PL    1/1:0,13:14:39.11:434,39,0
3    73113528    rs4676901    C    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533473    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    73434086    rs6787588    A    G    777.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466348    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:811,60,0
3    73437112    rs6549532    A    G    3077.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477434    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3110,244,0
3    73437185    rs61732653    A    G    1159.43    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.651;DB;DP=76;Dels=0.0;FS=2.215;HRun=1;HaplotypeScore=0.0;MQ=60.06;MQ0=0;MQRankSum=0.873;QD=15.26;ReadPosRankSum=-0.472;SNPEFF_AMINO_ACID_CHANGE=A141;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_73437119_73437220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000462146    GT:AD:DP:GQ:PL    0/1:32,43:76:99:1189,0,954
3    73437225    rs3830251    T    TA    1158.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.207;DB;DP=50;FS=0.0;HRun=9;HaplotypeScore=230.4962;IndelType=I;MQ=60.31;MQ0=0;MQRankSum=0.679;QD=23.17;ReadPosRankSum=0.325;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477434    GT:AD:DP:GQ:PL    1/1:11,38:50:74.73:1200,75,0
3    73438828    rs2306507    C    G    182.45    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.386;QD=18.25;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477434    GT:AD:DP:GQ:PL    0/1:3,7:10:88.60:212,0,89
3    73440108    rs35427155    G    GA    1759.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.675;DB;DP=70;FS=0.0;HRun=10;HaplotypeScore=244.6349;IndelType=I;MQ=58.97;MQ0=0;MQRankSum=-1.447;QD=25.14;ReadPosRankSum=-0.714;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477434    GT:AD:DP:GQ:PL    1/1:11,55:70:99:1802,142,0
3    73450198    rs3816831    G    A    455.58    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.764;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=59.23;MQ0=0;MQRankSum=0.153;QD=15.19;ReadPosRankSum=1.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263666    GT:AD:DP:GQ:PL    0/1:14,16:30:99:486,0,393
3    73453201    rs2291464    C    T    329.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308537    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:363,27,0
3    73453325    rs2291463    C    T    1595.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=V102;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_73453299_73453546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535920    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1629,123,0
3    73457041    rs754588    T    C    299.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308537    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:332,24,0
3    73457560    rs1488128    A    G    124.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263666    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
3    73651383    rs6809923    A    T    267.62    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.99;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.2;MQ0=0;MQRankSum=-0.264;QD=9.23;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263666    GT:AD:DP:GQ:PL    0/1:18,10:29:99:298,0,628
3    73651469    rs6797804    C    T    1115.08    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.463;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9436;MQ=59.06;MQ0=0;MQRankSum=-0.345;QD=11.26;ReadPosRankSum=0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263666    GT:AD:DP:GQ:PL    0/1:58,41:99:99:1145,0,1942
3    73651621    rs72439622    TA    T    1200.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.281;DB;DP=63;FS=0.0;HRun=11;HaplotypeScore=224.1658;IndelType=D;MQ=58.5;MQ0=0;MQRankSum=-0.421;QD=19.05;ReadPosRankSum=1.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263666    GT:AD:DP:GQ:PL    1/1:7,55:63:79.45:1242,79,0
3    73673578    rs6763344    G    C    70.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.4;SNPEFF_AMINO_ACID_CHANGE=A133;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_73673254_73674091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263666    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
3    74315580    rs615824    C    G    651.35    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.096;QD=10.68;ReadPosRankSum=-1.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263665    GT:AD:DP:GQ:PL    0/1:37,24:61:99:681,0,1262
3    74344134    rs1352475    A    G    320.76    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.785;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.031;QD=13.36;ReadPosRankSum=2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263665    GT:AD:DP:GQ:PL    0/1:11,13:24:99:351,0,380
3    75386297    rs6769147    G    A    382.38    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.14;DB;DP=51;Dels=0.0;FS=2.741;HRun=0;HaplotypeScore=0.0;MQ=52.98;MQ0=0;MQRankSum=1.147;QD=7.5;ReadPosRankSum=-0.444;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MYLKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509077    GT:AD:DP:GQ:PL    0/1:36,15:51:99:412,0,1146
3    75386380    rs4677501    T    G    1472.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=41.95;MQ0=0;QD=32.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MYLKP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509077    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1506,126,0
3    75397418    rs2324010    G    T    234.52    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.32;MQ0=0;MQRankSum=-0.818;QD=13.8;ReadPosRankSum=-1.203;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479200    GT:AD:DP:GQ:PL    0/1:8,9:17:99:265,0,283
3    75397542    rs3891037    A    G    962.44    MQFilter40    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.804;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.18;MQ0=5;MQRankSum=-1.638;QD=10.81;ReadPosRankSum=0.561;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479200    GT:AD:DP:GQ:PL    0/1:45,44:89:99:992,0,1215
3    75397679    rs3860597    G    A    2151.49    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DB;DP=164;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4822;MQ=47.34;MQ0=3;MQRankSum=-1.177;QD=13.12;ReadPosRankSum=0.291;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479200    GT:AD:DP:GQ:PL    0/1:82,81:164:99:2181,0,2251
3    75404937    rs57919596    T    TA    66.59    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=22;FS=0.0;HRun=17;HaplotypeScore=221.0499;IndelType=I;MQ=45.38;MQ0=0;MQRankSum=-1.386;QD=3.03;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331736    GT:AD:DP:GQ:PL    0/1:10,10:22:16.50:106,0,17
3    75404981    rs9310324    G    A    395.55    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.879;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.44;MQ0=0;MQRankSum=0.419;QD=9.65;ReadPosRankSum=0.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331736    GT:AD:DP:GQ:PL    0/1:20,21:41:99:426,0,518
3    75405290    rs111727979    A    G    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331736    GT:AD:DP:GQ:PL    0/1:3,2:5:67.42:67,0,100
3    75405815    rs17028240    C    G    1153.34    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.123;QD=14.42;ReadPosRankSum=2.043;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331736    GT:AD:DP:GQ:PL    0/1:44,36:80:99:1183,0,1384
3    75406584    rs34054461    C    T    2048.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.213;QD=34.15;ReadPosRankSum=-0.115;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478335    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2082,157,0
3    75407145    rs7638598    T    G    219.06    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.22;QD=12.89;ReadPosRankSum=-0.049;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241K7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331736    GT:AD:DP:GQ:PL    0/1:7,10:17:99:249,0,243
3    75419993    rs9713670    G    A    175.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.64;MQ0=0;QD=21.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504027    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:208,18,0
3    75420039    rs34802034    G    GA    74.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.48;DB;DP=17;FS=0.0;HRun=18;HaplotypeScore=217.1814;IndelType=I;MQ=43.27;MQ0=0;MQRankSum=-0.898;QD=4.14;ReadPosRankSum=-0.898;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504027    GT:AD:DP:GQ:PL    1/1:9,5:17:7.03:115,7,0
3    75420117    rs9713678    G    A    867.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.338;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.38;MQ0=0;MQRankSum=-0.111;QD=13.14;ReadPosRankSum=-0.525;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504027    GT:AD:DP:GQ:PL    0/1:33,33:66:99:897,0,829
3    75420180    rs62259093    A    G    1256.80    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.613;DB;DP=100;Dels=0.0;FS=1.688;HRun=0;HaplotypeScore=2.9458;MQ=54.74;MQ0=0;MQRankSum=1.434;QD=12.57;ReadPosRankSum=-0.048;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504027    GT:AD:DP:GQ:PL    0/1:49,51:100:99:1287,0,1571
3    75469886    rs3750286    C    G    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
3    75470190    rs192767744    C    T    84.57    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=23;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=35.85;MQ0=2;MQRankSum=0.815;QD=3.68;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:14,8:23:99:115,0,279
3    75472261    rs111470838    G    T    1371.02    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.827;DB;DP=81;Dels=0.0;FS=5.47;HRun=1;HaplotypeScore=1.9907;MQ=59.14;MQ0=0;MQRankSum=0.868;QD=16.93;ReadPosRankSum=1.187;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491583    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1401,0,1090
3    75472289    rs111581298    C    T    926.74    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.92;DB;DP=59;Dels=0.0;FS=5.795;HRun=0;HaplotypeScore=2.7199;MQ=59.65;MQ0=0;MQRankSum=0.966;QD=15.71;ReadPosRankSum=0.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491583    GT:AD:DP:GQ:PL    0/1:27,32:59:99:957,0,833
3    75475470    rs11128432    T    C    208.07    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-1.27;QD=12.24;ReadPosRankSum=1.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515248    GT:AD:DP:GQ:PL    0/1:10,7:17:99:238,0,322
3    75475588    rs9860745    C    T    1333.56    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.593;DB;DP=91;Dels=0.0;FS=0.974;HRun=0;HaplotypeScore=3.1064;MQ=57.2;MQ0=0;MQRankSum=2.123;QD=14.65;ReadPosRankSum=0.475;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515248    GT:AD:DP:GQ:PL    0/1:40,51:91:99:1364,0,1117
3    75475670    rs7430363    A    C    1209.37    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=111;Dels=0.0;FS=6.537;HRun=1;HaplotypeScore=4.6741;MQ=55.27;MQ0=3;MQRankSum=-3.917;QD=10.9;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515248    GT:AD:DP:GQ:PL    0/1:61,50:111:99:1239,0,1705
3    75475685    rs11128433    A    G    1012.94    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.014;DB;DP=121;Dels=0.0;FS=4.941;HRun=1;HaplotypeScore=1.5226;MQ=54.32;MQ0=5;MQRankSum=-5.217;QD=8.37;ReadPosRankSum=0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515248    GT:AD:DP:GQ:PL    0/1:70,50:121:99:1043,0,2101
3    75475707    rs113048321    G    T    1094.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.601;DB;DP=120;Dels=0.0;FS=1.633;HRun=0;HaplotypeScore=1.6545;MQ=55.01;MQ0=3;MQRankSum=-4.684;QD=9.12;ReadPosRankSum=1.005;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-803B1.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515248    GT:AD:DP:GQ:PL    0/1:72,48:120:99:1124,0,2263
3    75476572    rs7623451    C    T    983.39    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.13;DB;DP=81;Dels=0.0;FS=1.933;HRun=0;HaplotypeScore=0.0;MQ=56.08;MQ0=0;MQRankSum=2.163;QD=12.14;ReadPosRankSum=-0.968;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:42,38:81:99:1013,0,1320
3    75476786    rs7623635    C    T    1296.10    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.447;DB;DP=96;Dels=0.0;FS=9.804;HRun=0;HaplotypeScore=0.9665;MQ=57.38;MQ0=0;MQRankSum=-0.946;QD=13.5;ReadPosRankSum=-0.575;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:50,46:96:99:1326,0,1468
3    75476978    rs112799298    T    C    1596.81    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=113;Dels=0.0;FS=7.621;HRun=0;HaplotypeScore=2.7523;MQ=54.9;MQ0=0;MQRankSum=-4.245;QD=14.13;ReadPosRankSum=-1.531;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:56,57:113:99:1627,0,1606
3    75477009    rs112201406    A    G    1403.45    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.942;DB;DP=118;Dels=0.0;FS=1.487;HRun=0;HaplotypeScore=3.5571;MQ=54.03;MQ0=0;MQRankSum=-5.113;QD=11.89;ReadPosRankSum=-0.246;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:60,58:118:99:1433,0,1894
3    75477130    rs112104089    T    A    764.81    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.775;DB;DP=73;Dels=0.0;FS=2.955;HRun=1;HaplotypeScore=1.7621;MQ=58.09;MQ0=0;MQRankSum=0.028;QD=10.34;ReadPosRankSum=-0.252;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:43,30:73:99:795,0,1371
3    75477268    rs36048024    G    T    36.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=7.34;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:2,3:5:66.70:67,0,68
3    75478401    .    AGAGT    A    2398.52    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=7.412;DP=104;FS=0.0;HRun=0;HaplotypeScore=495.3603;IndelType=D;MQ=54.6;MQ0=0;MQRankSum=-2.372;QD=22.84;ReadPosRankSum=-0.145;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:55,50:104:99:2438,0,3746
3    75478496    rs111923719    C    T    627.66    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.972;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.39;MQ0=0;MQRankSum=-6.395;QD=11.21;ReadPosRankSum=0.841;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:31,25:56:99:658,0,962
3    75478529    rs151257631    G    A    430.91    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.233;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=48.5;MQ0=0;MQRankSum=-5.255;QD=11.34;ReadPosRankSum=-0.088;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:21,17:38:99:461,0,743
3    75479916    rs9713661    G    A    768.10    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.114;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.62;MQ0=0;MQRankSum=-4.715;QD=16.34;ReadPosRankSum=-0.461;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:19,28:47:99:798,0,563
3    75480039    rs34306442    TCA    T    1126.39    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=6.676;DB;DP=127;FS=25.071;HRun=0;HaplotypeScore=436.0285;IndelType=D;MQ=48.08;MQ0=2;MQRankSum=-8.5;QD=8.22;ReadPosRankSum=2.763;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000477247    GT:AD:DP:GQ:PL    0/1:88,49:127:99:1165,0,3407
3    75480183    rs9714401    C    G    83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.207;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.0;MQ0=2;MQRankSum=-2.764;QD=3.46;ReadPosRankSum=0.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:15,9:24:99:113,0,482
3    75482194    rs7639021    T    C    33.40    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=58.07;MQ0=0;MQRankSum=1.589;QD=4.18;ReadPosRankSum=0.572;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:6,2:8:63.39:63,0,186
3    75484164    rs61032550    C    A    65.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.72;QD=10.98;ReadPosRankSum=1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:2,4:6:62.11:96,0,62
3    75484192    rs111456578    G    A    66.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=1.537;QD=11.16;ReadPosRankSum=0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459803    GT:AD:DP:GQ:PL    0/1:3,3:6:67.52:97,0,68
3    75484244    rs9848544    A    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.55;MQ0=0;QD=23.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477247    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    75679773    rs147943289    A    T    60.47    MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5536;MQ=12.34;MQ0=6;MQRankSum=-1.283;QD=3.18;ReadPosRankSum=0.296;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:7,12:19:23.45:90,0,23
3    75679791    rs143252839    C    T    117.59    MQFilter40    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.701;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4964;MQ=12.82;MQ0=7;MQRankSum=-1.575;QD=4.36;ReadPosRankSum=-2.079;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:8,19:27:14.50:148,0,14
3    75679820    .    G    T    173.59    MQFilter40    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.213;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=13.28;MQ0=6;MQRankSum=-0.402;QD=4.69;ReadPosRankSum=1.677;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:11,26:37:26.23:204,0,26
3    75679876    rs150592543    G    A    234.63    HaplotypeScoreFilter13;MQFilter40    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=3.229;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=13.6264;MQ=12.01;MQ0=15;MQRankSum=-0.286;QD=2.79;ReadPosRankSum=-1.186;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:18,66:84:36.94:265,0,37
3    75679893    .    C    T    84.13    MQFilter40;QDFilter2    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.13;DP=123;Dels=0.0;FS=11.187;HRun=1;HaplotypeScore=0.9665;MQ=18.77;MQ0=16;MQRankSum=-0.615;QD=0.68;ReadPosRankSum=1.557;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:94,29:123:99:114,0,1037
3    75679937    rs141031386    G    A    316.23    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.002;DB;DP=204;Dels=0.0;FS=10.099;HRun=0;HaplotypeScore=48.8904;MQ=23.9;MQ0=13;MQRankSum=-1.086;QD=1.55;ReadPosRankSum=-1.414;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:153,51:204:99:346,0,2934
3    75679944    .    C    T    861.94    HaplotypeScoreFilter13;MQFilter40    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.911;DP=212;Dels=0.0;FS=5.172;HRun=0;HaplotypeScore=44.3588;MQ=24.98;MQ0=12;MQRankSum=0.82;QD=4.07;ReadPosRankSum=1.313;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:154,57:212:99:892,0,2687
3    75679973    rs183720508    A    G    492.97    MQFilter40;QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=5.601;DB;DP=250;DS;Dels=0.0;FS=13.757;HRun=0;HaplotypeScore=0.9332;MQ=26.57;MQ0=4;MQRankSum=-0.564;QD=1.97;ReadPosRankSum=0.297;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:189,61:250:99:523,0,3716
3    75680010    rs75174508    T    C    258.44    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.818;DB;DP=208;DS;Dels=0.0;FS=6.084;HRun=0;HaplotypeScore=17.3626;MQ=28.03;MQ0=3;MQRankSum=-1.111;QD=1.24;ReadPosRankSum=1.125;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:165,43:208:99:288,0,3505
3    75680122    rs7614836    C    A    102.37    MQFilter40;QDFilter2    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.792;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=14.68;MQ0=8;MQRankSum=1.348;QD=1.97;ReadPosRankSum=1.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:34,18:52:99:132,0,296
3    75680133    rs10154923    G    T    86.68    MQFilter40;QDFilter2    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.639;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6274;MQ=15.06;MQ0=5;MQRankSum=-0.907;QD=1.81;ReadPosRankSum=-0.149;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:31,15:48:99:117,0,276
3    75680143    rs111613657    G    T    92.66    MQFilter40    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.292;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=15.46;MQ0=5;MQRankSum=-0.239;QD=2.44;ReadPosRankSum=-1.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:25,13:38:99:123,0,237
3    75680159    rs1829175    A    T    61.25    MQFilter40    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.47;MQ0=5;MQRankSum=0.765;QD=2.11;ReadPosRankSum=-0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408868    GT:AD:DP:GQ:PL    0/1:21,8:29:91.24:91,0,184
3    75790972    rs118003039    C    T    72.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.6;MQ0=16;QD=3.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF717;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422325    GT:AD:DP:GQ:PL    1/1:10,11:21:9.02:104,9,0
3    75986542    rs62269816    A    G    1010.93    HaplotypeScoreFilter13    AB=0.327;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.167;DB;DP=110;Dels=0.0;FS=2.012;HRun=0;HaplotypeScore=25.3604;MQ=42.86;MQ0=6;MQRankSum=-6.529;QD=9.19;ReadPosRankSum=0.605;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487694    GT:AD:DP:GQ:PL    0/1:36,74:110:99:1041,0,1210
3    75986622    rs9631539    C    G    3542.94    PASS    AB=0.335;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.534;DB;DP=248;DS;Dels=0.0;FS=7.98;HRun=0;HaplotypeScore=1.9157;MQ=43.44;MQ0=20;MQRankSum=-10.275;QD=14.29;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487694    GT:AD:DP:GQ:PL    0/1:83,165:248:99:3543,0,2515
3    75986663    rs12171318    C    A    2574.15    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=7.306;DB;DP=243;DS;Dels=0.0;FS=16.503;HRun=2;HaplotypeScore=0.0;MQ=41.32;MQ0=23;MQRankSum=-11.952;QD=10.59;ReadPosRankSum=1.87;SNPEFF_AMINO_ACID_CHANGE=R7S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_75986645_75986753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:87,155:243:99:2604,0,2504
3    75986686    rs62269817    A    G    2931.65    HaplotypeScoreFilter13    AB=0.311;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.845;DB;DP=244;DS;Dels=0.0;FS=1.836;HRun=0;HaplotypeScore=25.9175;MQ=41.42;MQ0=17;MQRankSum=-10.803;QD=12.01;ReadPosRankSum=-1.599;SNPEFF_AMINO_ACID_CHANGE=T14;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_75986645_75986753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:76,168:244:99:2962,0,2267
3    75986695    rs79015247    G    A    81.63    HaplotypeScoreFilter13;QDFilter2    AB=0.883;AC=1;AF=0.50;AN=2;BaseQRankSum=3.839;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=29.8641;MQ=43.05;MQ0=11;MQRankSum=-3.135;QD=0.33;ReadPosRankSum=-0.432;SNPEFF_AMINO_ACID_CHANGE=P17;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_75986645_75986753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:219,29:248:99:112,0,5505
3    75986717    rs78834776    G    A    585.84    HaplotypeScoreFilter13    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.177;DB;DP=250;DS;Dels=0.0;FS=6.567;HRun=0;HaplotypeScore=47.2183;MQ=45.78;MQ0=9;MQRankSum=-3.004;QD=2.34;ReadPosRankSum=0.476;SNPEFF_AMINO_ACID_CHANGE=V25M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_75986645_75986753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:200,50:250:99:616,0,5690
3    75986719    rs62269818    G    C    3875.36    HaplotypeScoreFilter13    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=5.598;DB;DP=250;DS;Dels=0.0;FS=22.21;HRun=0;HaplotypeScore=47.2183;MQ=45.83;MQ0=9;MQRankSum=-9.2;QD=15.5;ReadPosRankSum=1.648;SNPEFF_AMINO_ACID_CHANGE=V25;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_75986645_75986753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:80,170:250:99:3875,0,2166
3    75986794    rs80235520    G    A    2209.92    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.264;DB;DP=145;DS;Dels=0.0;FS=13.519;HRun=2;HaplotypeScore=1.841;MQ=50.62;MQ0=3;MQRankSum=-7.396;QD=15.24;ReadPosRankSum=-0.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:61,83:145:99:2240,0,1709
3    75986813    rs77101234    T    A    1434.31    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.554;DB;DP=113;DS;Dels=0.0;FS=3.858;HRun=1;HaplotypeScore=2.5452;MQ=52.12;MQ0=3;MQRankSum=-5.932;QD=12.69;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:60,53:113:99:1464,0,1843
3    75986833    rs73123284    C    T    506.63    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=4.818;DB;DP=88;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8606;MQ=54.09;MQ0=4;MQRankSum=-4.278;QD=5.76;ReadPosRankSum=-3.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:60,27:88:99:537,0,1640
3    75986874    rs7610755    G    C    1337.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.238;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.2;MQ0=7;MQRankSum=5.145;QD=23.46;ReadPosRankSum=3.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:19,38:57:99:1367,0,103
3    75986880    rs76883623    C    G    101.02    QDFilter2    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=4.819;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8583;MQ=49.6;MQ0=7;MQRankSum=-5.111;QD=1.87;ReadPosRankSum=-2.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:35,19:54:99:131,0,1053
3    75986920    rs74938295    A    G    226.43    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=3.109;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=43.22;MQ0=5;MQRankSum=-4.843;QD=6.12;ReadPosRankSum=3.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:16,21:37:99:256,0,563
3    75986924    rs145511440    T    G    227.97    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.629;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.66;MQ0=5;MQRankSum=-4.763;QD=6.33;ReadPosRankSum=3.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:15,21:36:99:258,0,542
3    75986950    rs75380808    A    G    321.15    MQFilter40    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.468;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9995;MQ=35.41;MQ0=0;MQRankSum=-3.107;QD=14.6;ReadPosRankSum=-1.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:4,18:22:99:351,0,120
3    75986953    .    C    T    55.61    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.9981;MQ=35.41;MQ0=0;MQRankSum=-0.99;QD=2.53;ReadPosRankSum=-2.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:14,8:22:85.61:86,0,381
3    75986961    rs72886589    T    C    251.38    MQFilter40    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.8685;MQ=36.32;MQ0=0;MQRankSum=-3.05;QD=13.23;ReadPosRankSum=-0.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:4,15:19:99:281,0,117
3    75986975    rs73841023    A    T    115.24    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=34.9;MQ0=0;MQRankSum=-1.733;QD=11.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:2,8:10:61.94:145,0,62
3    76467191    rs7647603    A    G    112.87    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.57;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343019    GT:AD:DP:GQ:PL    0/1:1,4:5:24.27:143,0,24
3    77595835    rs699451    A    G    149.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.219;QD=16.66;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332191    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,134
3    77599763    rs2029004    C    T    74.79    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=14.96;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332191    GT:AD:DP:GQ:PL    0/1:1,4:5:27.28:105,0,27
3    77607070    rs79493675    A    AC    2151.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=2;HaplotypeScore=126.2677;IndelType=I;MQ=60.77;MQ0=0;QD=39.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332191    GT:AD:DP:GQ:PL    1/1:3,51:54:99:2193,154,0
3    77644039    rs775720    A    G    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332191    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
3    77645946    rs111847008    CT    C    484.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=13;HaplotypeScore=231.3615;IndelType=D;MQ=56.13;MQ0=0;QD=12.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332191    GT:AD:DP:GQ:PL    1/1:7,27:38:76.62:526,77,0
3    77645984    rs775718    A    G    771.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.72;MQ0=0;MQRankSum=0.901;QD=30.88;ReadPosRankSum=-0.763;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332191    GT:AD:DP:GQ:PL    1/1:1,24:25:27.43:805,27,0
3    77667044    rs1523768    G    A    317.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469233    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:351,27,0
3    78656351    rs9831685    A    T    70.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:102,9,0
3    78663634    rs2872006    T    C    130.27    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=10.86;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:7,5:12:99:160,0,253
3    78663656    rs2872005    C    T    133.33    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=9.52;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:9,5:14:99:163,0,322
3    78663956    rs1027832    G    A    379.28    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.596;DB;DP=37;Dels=0.0;FS=3.909;HRun=1;HaplotypeScore=8.2955;MQ=55.25;MQ0=0;MQRankSum=0.073;QD=10.25;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:21,16:37:99:409,0,290
3    78664093    rs1027833    C    T    82.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    78666765    rs9839790    T    C    1176.09    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=1.372;DB;DP=83;Dels=0.0;FS=4.235;HRun=0;HaplotypeScore=0.9867;MQ=58.31;MQ0=0;MQRankSum=-2.046;QD=14.17;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:40,43:83:99:1206,0,1138
3    78676422    rs7614084    G    A    539.26    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.933;DB;DP=36;Dels=0.0;FS=3.627;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.032;QD=14.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:17,19:36:99:569,0,534
3    78676467    rs7636043    A    G    1226.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:0,41:41:96.31:1259,96,0
3    78680578    rs6548592    T    C    742.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:0,24:24:66.18:775,66,0
3    78682880    rs2660738    T    C    278.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:312,24,0
3    78695185    rs73108203    A    G    307.62    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=13.98;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:10,12:22:99:338,0,364
3    78700779    rs3925684    C    A    851.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:884,72,0
3    78700838    rs58872086    G    A    1013.58    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=65;Dels=0.0;FS=4.857;HRun=1;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=0.958;QD=15.59;ReadPosRankSum=-1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:30,35:65:99:1044,0,981
3    78701170    rs60505291    T    C    450.78    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.886;DB;DP=37;Dels=0.0;FS=3.259;HRun=1;HaplotypeScore=1.5115;MQ=59.38;MQ0=0;MQRankSum=-1.63;QD=12.18;ReadPosRankSum=-1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:20,17:37:99:481,0,698
3    78701217    rs7619956    A    G    679.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:712,54,0
3    78709159    rs2118068    C    T    81.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=13.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:113,9,0
3    78717508    rs2255164    G    A    1267.26    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.239;DB;DP=76;Dels=0.0;FS=5.137;HRun=0;HaplotypeScore=0.9578;MQ=59.7;MQ0=0;MQRankSum=2.091;QD=16.67;ReadPosRankSum=-1.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    0/1:34,42:76:99:1297,0,1100
3    78737962    rs967454    G    A    1444.36    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.679;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5979;MQ=59.73;MQ0=0;MQRankSum=0.211;QD=16.99;ReadPosRankSum=-0.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488735    GT:AD:DP:GQ:PL    0/1:38,47:85:99:1474,0,1088
3    78796078    rs2304503    C    A    2395.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5518;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398412    GT:AD:DP:GQ:PL    1/1:1,74:75:99:2428,190,0
3    79633615    rs58255176    A    C    140.10    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=55.52;MQ0=0;MQRankSum=2.223;QD=8.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398414    GT:AD:DP:GQ:PL    0/1:9,7:16:99:170,0,238
3    79633754    rs72905972    T    A    104.65    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=53.29;MQ0=0;MQRankSum=-2.669;QD=5.23;ReadPosRankSum=0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398414    GT:AD:DP:GQ:PL    0/1:13,6:20:99:135,0,373
3    79633846    rs9871796    T    C    134.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=19.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398414    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:167,15,0
3    81539382    rs846    C    T    140.66    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.79;ReadPosRankSum=0.143;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264326    GT:AD:DP:GQ:PL    0/1:6,5:11:99:171,0,213
3    81548209    rs34988523    T    TAAG    439.60    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.99;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=81.6204;IndelType=I;MQ=57.41;MQ0=0;MQRankSum=-0.087;QD=17.58;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264326    GT:AD:DP:GQ:PL    0/1:17,8:25:99:479,0,759
3    81584268    rs139816486    CT    C    34.79    QDFilter2    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=22;FS=0.0;HRun=14;HaplotypeScore=137.2585;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=0.779;QD=1.58;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264326    GT:AD:DP:GQ:PL    0/1:14,6:22:73.82:74,0,128
3    81626909    rs6548770    C    T    67.81    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.48;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264326    GT:AD:DP:GQ:PL    0/1:5,3:8:97.81:98,0,175
3    81643167    rs2172397    T    C    1478.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=I293V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_81643059_81643174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000489715    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1512,111,0
3    81698130    rs2229519    T    C    1148.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.077;DB;DP=77;Dels=0.0;FS=14.306;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.247;QD=14.92;ReadPosRankSum=-0.325;SNPEFF_AMINO_ACID_CHANGE=R149G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_81698007_81698142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000489715    GT:AD:DP:GQ:PL    0/1:33,44:77:99:1179,0,1069
3    81810702    rs11391701    A    AG    388.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=61.192;IndelType=I;MQ=45.77;MQ0=0;QD=35.34;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_81810526_81810704;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBE1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000264326    GT:AD:DP:GQ:PL    1/1:2,9:11:30.10:431,30,0
3    81810725    rs2290081    C    T    36.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=7.34;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=A33;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_81810707_81810823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264326    GT:AD:DP:GQ:PL    0/1:3,2:5:62.74:67,0,63
3    84339451    rs5850635    CA    C    110.69    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=45.8348;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.286;QD=6.92;ReadPosRankSum=-1.776;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC108696.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408453    GT:AD:DP:GQ:PL    0/1:11,5:16:99:150,0,405
3    85984830    rs36080783    T    C    787.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383699    GT:AD:DP:GQ:PL    1/1:0,20:21:60.20:821,60,0
3    87100160    rs4858947    T    C    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.97;MQ0=0;QD=21.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPATP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496669    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
3    87100309    rs2575753    T    C    424.30    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.961;DB;DP=46;Dels=0.0;FS=3.519;HRun=1;HaplotypeScore=0.0;MQ=43.93;MQ0=1;MQRankSum=0.151;QD=9.22;ReadPosRankSum=0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPATP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496669    GT:AD:DP:GQ:PL    0/1:27,19:46:99:454,0,735
3    87100434    rs7619398    G    A    879.72    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.079;DB;DP=62;Dels=0.0;FS=2.419;HRun=0;HaplotypeScore=1.6208;MQ=43.56;MQ0=2;MQRankSum=-0.656;QD=14.19;ReadPosRankSum=-0.279;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPATP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496669    GT:AD:DP:GQ:PL    0/1:25,37:62:99:910,0,667
3    87100447    rs9831869    G    A    761.71    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.79;MQ0=2;MQRankSum=0.921;QD=12.29;ReadPosRankSum=-0.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPATP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496669    GT:AD:DP:GQ:PL    0/1:35,27:62:99:792,0,890
3    87276699    rs2279720    C    T    693.23    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=2.986;DB;DP=43;Dels=0.0;FS=9.282;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=16.12;ReadPosRankSum=-1.207;SNPEFF_AMINO_ACID_CHANGE=T9;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_87276435_87276706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263780    GT:AD:DP:GQ:PL    0/1:19,24:43:99:723,0,555
3    87295049    rs11540913    T    C    2390.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4679;MQ=59.68;MQ0=0;MQRankSum=-0.415;QD=33.67;ReadPosRankSum=-0.61;SNPEFF_AMINO_ACID_CHANGE=T104;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_87294864_87295058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263780    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2424,181,0
3    87299075    rs1044499    A    C    778.79    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=1.479;DB;DP=50;Dels=0.0;FS=6.129;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=15.58;ReadPosRankSum=-0.61;SNPEFF_AMINO_ACID_CHANGE=T124;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_87299025_87299127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263780    GT:AD:DP:GQ:PL    0/1:23,27:50:99:809,0,709
3    87299238    rs2270666    G    C    192.20    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=21.36;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263780    GT:AD:DP:GQ:PL    0/1:2,7:9:55.17:222,0,55
3    88105264    rs3732776    A    C    130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGGBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474441    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
3    88188420    rs9813894    G    A    991.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-159G9.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473136    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:1025,75,0
3    88189341    rs7653652    T    C    7439.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.583;DB;DP=218;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3602;MQ=59.81;MQ0=0;MQRankSum=0.146;QD=34.13;ReadPosRankSum=0.907;SNPEFF_AMINO_ACID_CHANGE=I294T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_88188254_88190198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF654;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309495    GT:AD:DP:GQ:PL    1/1:1,217:218:99:7440,512,0
3    88190768    rs7432826    C    A    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-159G9.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    88190809    rs7432838    C    T    94.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-159G9.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498458    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
3    88199179    rs6551277    T    C    576.12    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.9316;MQ=58.59;MQ0=0;QD=25.05;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464919    GT:AD:DP:GQ:PL    1/1:1,22:23:51.12:609,51,0
3    88199185    rs11425443    T    TC    684.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.576;DB;DP=23;FS=0.0;HRun=7;HaplotypeScore=151.8157;IndelType=I;MQ=58.59;MQ0=0;MQRankSum=1.576;QD=29.77;ReadPosRankSum=0.788;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464919    GT:AD:DP:GQ:PL    1/1:2,21:23:56.12:727,56,0
3    88199298    rs6551278    T    C    698.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.11;SNPEFF_AMINO_ACID_CHANGE=T32;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_88198893_88199335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318887    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:732,60,0
3    89176645    rs9835094    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    89456555    rs3792572    T    A    181.78    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=13;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=13.98;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    0/1:5,8:13:99:212,0,178
3    89480265    rs12639506    A    G    445.29    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-1.387;QD=12.72;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    0/1:17,18:35:99:475,0,582
3    89498619    rs1028011    A    G    731.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:764,57,0
3    89521509    rs73139110    C    A    309.82    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.632;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.586;QD=10.33;ReadPosRankSum=-0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    0/1:17,13:30:99:340,0,623
3    89521602    rs112297761    T    TC    1629.17    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.549;DB;DP=97;FS=10.724;HRun=0;HaplotypeScore=245.8011;IndelType=I;MQ=58.93;MQ0=0;MQRankSum=0.332;QD=16.8;ReadPosRankSum=0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    0/1:52,45:97:99:1668,0,1791
3    89521693    rs35124509    T    C    1038.86    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.83;DB;DP=79;Dels=0.0;FS=5.125;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.476;QD=13.15;ReadPosRankSum=1.093;SNPEFF_AMINO_ACID_CHANGE=W924R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_89521614_89521769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    0/1:39,40:79:99:1069,0,1260
3    89521725    rs1054750    T    C    819.75    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.029;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.38;QD=14.9;ReadPosRankSum=-0.583;SNPEFF_AMINO_ACID_CHANGE=G934;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_89521614_89521769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    0/1:25,30:55:99:850,0,826
3    89521900    rs73139115    G    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    89528461    rs12631313    A    T    148.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.81;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    0/1:5,5:10:99:178,0,181
3    89528477    rs12636710    G    A    163.59    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=12.58;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336596    GT:AD:DP:GQ:PL    0/1:6,7:13:99:194,0,201
3    90264768    rs6803112    A    G    2904    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PROSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474651    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2937,235,0
3    90274805    rs7429659    G    A    3733.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.76;MQ0=0;QD=33.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PROSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474651    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3734,274,0
3    90276511    rs9815264    G    A    290.91    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.923;DB;DP=23;Dels=0.0;FS=4.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.092;QD=12.65;ReadPosRankSum=-1.016;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PROSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474651    GT:AD:DP:GQ:PL    0/1:11,12:23:99:321,0,324
3    90276661    rs9815542    G    A    297.83    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.341;QD=12.41;ReadPosRankSum=0.527;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PROSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474651    GT:AD:DP:GQ:PL    0/1:13,11:24:99:328,0,449
3    90306556    rs34271374    GC    G    203.68    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=17;FS=2.062;HRun=1;HaplotypeScore=47.3782;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=0.146;QD=11.98;ReadPosRankSum=-2.391;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PROSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474651    GT:AD:DP:GQ:PL    0/1:10,7:17:99:243,0,429
3    93593119    rs6123    T    C    1378.58    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.065;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=51.38;MQ0=1;MQRankSum=1.18;QD=12.53;ReadPosRankSum=0.952;SNPEFF_AMINO_ACID_CHANGE=P536;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_93591953_93593249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407433    GT:AD:DP:GQ:PL    0/1:59,50:110:99:1409,0,1728
3    93605126    rs8178649    A    G    803.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.443;QD=20.09;ReadPosRankSum=2.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394236    GT:AD:DP:GQ:PL    0/1:16,24:40:99:834,0,501
3    93646396    rs8178610    C    T    72.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.1;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348974    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,110
3    93780109    rs61739170    G    C    2106.92    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3537;MQ=59.56;MQ0=0;MQRankSum=-0.813;QD=13.42;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=P83A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_93776766_93780450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DHFRL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314636    GT:AD:DP:GQ:PL    0/1:88,67:156:99:2137,0,2658
3    93813171    rs10934676    C    G    287.47    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.592;QD=15.13;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314622    GT:AD:DP:GQ:PL    0/1:9,10:19:99:317,0,251
3    94226412    rs113985616    G    A    449.93    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.623;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.27;MQ0=0;MQRankSum=0.162;QD=15.51;ReadPosRankSum=1.091;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-668N23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313754    GT:AD:DP:GQ:PL    0/1:12,16:29:99:480,0,355
3    96068956    rs4857197    T    C    2720.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HNRNPKP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485383    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2754,208,0
3    96069450    rs34039875    CAT    C    1409.70    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=5.7;DB;DP=80;FS=5.787;HRun=0;HaplotypeScore=282.8375;IndelType=D;MQ=59.7;MQ0=0;MQRankSum=1.633;QD=17.62;ReadPosRankSum=0.459;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HNRNPKP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485383    GT:AD:DP:GQ:PL    0/1:44,36:80:99:1449,0,2425
3    96152471    rs326305    A    G    65.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=7.31;ReadPosRankSum=-0.361;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC108697.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401317    GT:AD:DP:GQ:PL    0/1:5,4:9:95.79:96,0,172
3    96385064    rs75357909    G    A    852.52    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.095;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=-0.207;QD=13.98;ReadPosRankSum=-1.627;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC117444.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390742    GT:AD:DP:GQ:PL    0/1:30,31:61:99:883,0,889
3    96385084    rs7630008    C    T    2066.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.61;MQ0=0;QD=32.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC117444.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390742    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2099,159,0
3    96385304    rs4499624    G    A    323.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=24.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC117444.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390742    GT:AD:DP:GQ:PL    1/1:0,13:13:27.09:356,27,0
3    97194422    rs7624823    T    G    1225.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=38.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389672    GT:AD:DP:GQ:PL    1/1:0,32:32:90.30:1259,90,0
3    97197948    rs967571    C    T    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389672    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
3    97467361    rs138837886    ATCTC    A    582.50    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=3.285;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=148.2681;IndelType=D;MQ=59.61;MQ0=0;MQRankSum=0.804;QD=18.79;ReadPosRankSum=0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477384    GT:AD:DP:GQ:PL    0/1:15,15:31:99:622,0,896
3    97499654    rs10935082    T    A    541.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335979    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:574,45,0
3    97517118    rs4857294    G    C    93.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493990    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    97605313    rs9862347    A    T    203.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182096    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:237,24,0
3    97605677    rs831902    A    G    402.70    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=41;Dels=0.0;FS=1.986;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.397;QD=9.82;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182096    GT:AD:DP:GQ:PL    0/1:25,16:41:99:433,0,831
3    97607290    rs13065340    G    A    818.22    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.363;DB;DP=88;Dels=0.0;FS=2.968;HRun=0;HaplotypeScore=2.9495;MQ=59.1;MQ0=0;MQRankSum=-0.277;QD=9.3;ReadPosRankSum=0.216;SNPEFF_AMINO_ACID_CHANGE=P517;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97607185_97607299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000182096    GT:AD:DP:GQ:PL    0/1:56,32:88:99:848,0,1581
3    97611916    rs1506441    A    C    348.24    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.218;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.973;QD=11.23;ReadPosRankSum=0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182096    GT:AD:DP:GQ:PL    0/1:17,14:31:99:378,0,545
3    97619250    rs5851085    C    CAACTA    1087.60    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.194;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=96.425;IndelType=I;MQ=55.2;MQ0=0;MQRankSum=-1.085;QD=45.32;ReadPosRankSum=-0.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182096    GT:AD:DP:GQ:PL    0/1:14,9:24:99:1127,0,569
3    97634253    rs831877    C    T    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182096    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
3    97651774    rs9844662    A    T    105.33    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.07;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182096    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:135,0,27
3    97651884    rs4857298    A    C    412.71    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=31;Dels=0.0;FS=2.483;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.963;QD=13.31;ReadPosRankSum=-0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182096    GT:AD:DP:GQ:PL    0/1:17,14:31:99:443,0,569
3    97659865    rs2201151    G    T    226.04    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=17.39;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MINA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333396    GT:AD:DP:GQ:PL    0/1:5,8:13:99:256,0,170
3    97660084    rs11544446    C    T    891.82    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.799;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=59.71;MQ0=0;MQRankSum=-0.594;QD=11.29;ReadPosRankSum=-0.899;SNPEFF_AMINO_ACID_CHANGE=C124;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97659992_97660105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000495403    GT:AD:DP:GQ:PL    0/1:47,32:79:99:922,0,1551
3    97660106    rs4857302    A    C    1678.82    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.444;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.613;QD=19.08;ReadPosRankSum=-0.204;SNPEFF_AMINO_ACID_CHANGE=N133H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97659992_97660150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389622    GT:AD:DP:GQ:PL    0/1:34,54:88:99:1709,0,911
3    97660198    rs832089    A    G    1834.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495403    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1867,135,0
3    97664725    rs2172257    C    T    645.72    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DB;DP=36;Dels=0.0;FS=4.141;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.033;QD=17.94;ReadPosRankSum=1.581;SNPEFF_AMINO_ACID_CHANGE=A132T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97664642_97664731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MINA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442492    GT:AD:DP:GQ:PL    0/1:13,23:36:99:676,0,390
3    97673268    rs832079    A    C    477.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_AMINO_ACID_CHANGE=S251;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97673236_97673339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MINA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330299    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:510,39,0
3    97705962    rs68016269    A    AT    115.17    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=28.2976;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=-0.729;QD=8.86;ReadPosRankSum=0.729;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GABRR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472788    GT:AD:DP:GQ:PL    0/1:8,5:13:88.85:154,0,89
3    97720339    rs1688378    A    G    353.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GABRR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470589    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:386,33,0
3    97726747    rs832032    T    A    134.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GABRR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470589    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
3    97727727    rs832030    G    C    215.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GABRR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470589    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
3    97727753    rs832029    G    A    327.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GABRR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470589    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:361,27,0
3    97731434    rs67802518    C    CA    934.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=7;HaplotypeScore=61.0591;IndelType=I;MQ=59.96;MQ0=0;QD=31.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GABRR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470589    GT:AD:DP:GQ:PL    1/1:3,27:30:81.25:977,81,0
3    97753931    rs832070    T    C    156.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GABRR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470589    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
3    97805884    rs61357644    T    C    290.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358642    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
3    97805954    rs13082722    T    C    1495.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358642    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1528,114,0
3    97806616    rs4518168    G    A    1735.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_AMINO_ACID_CHANGE=M200I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97806017_97806946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358642    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1768,132,0
3    97806999    rs6439602    T    C    175.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358642    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
3    97851475    rs4857328    G    C    522.59    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.814;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5113;MQ=49.06;MQ0=0;MQRankSum=-0.337;QD=16.86;ReadPosRankSum=-0.496;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354565    GT:AD:DP:GQ:PL    0/1:14,17:31:99:553,0,481
3    97851998    rs9845327    A    C    549.98    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.003;DB;DP=126;Dels=0.01;FS=10.082;HRun=0;HaplotypeScore=2.4637;MQ=41.68;MQ0=19;MQRankSum=-6.947;QD=4.33;ReadPosRankSum=-1.814;SNPEFF_AMINO_ACID_CHANGE=I153L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97851542_97852483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354565    GT:AD:DP:GQ:PL    0/1:69,57:126:99:580,0,2124
3    97852083    rs9826076    C    T    197.07    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.514;DB;DP=79;Dels=0.0;FS=3.402;HRun=1;HaplotypeScore=0.0;MQ=26.81;MQ0=26;MQRankSum=-3.844;QD=2.49;ReadPosRankSum=-1.128;SNPEFF_AMINO_ACID_CHANGE=T181I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97851542_97852483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354565    GT:AD:DP:GQ:PL    0/1:47,32:79:99:227,0,1038
3    97852229    rs9849637    T    A    775.05    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DB;DP=59;Dels=0.0;FS=1.129;HRun=3;HaplotypeScore=1.8055;MQ=58.35;MQ0=0;MQRankSum=1.782;QD=12.92;ReadPosRankSum=0.417;SNPEFF_AMINO_ACID_CHANGE=S230T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97851542_97852483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354565    GT:AD:DP:GQ:PL    0/1:30,29:59:99:805,0,925
3    97852291    rs112819024    A    G    1164.23    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=3.226;DB;DP=91;Dels=0.0;FS=6.024;HRun=0;HaplotypeScore=4.189;MQ=59.38;MQ0=0;MQRankSum=-1.336;QD=12.79;ReadPosRankSum=1.786;SNPEFF_AMINO_ACID_CHANGE=L250;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97851542_97852483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354565    GT:AD:DP:GQ:PL    0/1:53,37:91:99:1194,0,1666
3    97868174    rs4857075    T    G    745.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.29;MQ0=0;MQRankSum=2.553;QD=14.34;ReadPosRankSum=0.467;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_97868170_97869249;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437310    GT:AD:DP:GQ:PL    0/1:26,26:52:99:776,0,807
3    97868419    rs4241468    G    A    3219.44    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.419;DB;DP=238;Dels=0.0;FS=18.922;HRun=0;HaplotypeScore=5.2685;MQ=52.94;MQ0=1;MQRankSum=-2.2;QD=13.53;ReadPosRankSum=-0.266;SNPEFF_AMINO_ACID_CHANGE=G64R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97868170_97869249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437310    GT:AD:DP:GQ:PL    0/1:120,117:238:99:3249,0,3618
3    97868616    rs4379004    C    T    1425.93    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=4.653;DB;DP=163;Dels=0.0;FS=1.417;HRun=2;HaplotypeScore=0.5784;MQ=47.37;MQ0=11;MQRankSum=-9.771;QD=8.75;ReadPosRankSum=0.237;SNPEFF_AMINO_ACID_CHANGE=P129;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97868170_97869249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437310    GT:AD:DP:GQ:PL    0/1:83,80:163:99:1456,0,2365
3    97868795    rs4857076    A    G    1403.03    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.157;DB;DP=81;Dels=0.0;FS=3.234;HRun=0;HaplotypeScore=0.0;MQ=57.7;MQ0=0;MQRankSum=0.337;QD=17.32;ReadPosRankSum=-0.773;SNPEFF_AMINO_ACID_CHANGE=Y189C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97868170_97869249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437310    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1433,0,1134
3    97868970    rs12639519    T    A    759.28    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=53;Dels=0.0;FS=1.077;HRun=0;HaplotypeScore=6.7766;MQ=56.46;MQ0=0;MQRankSum=0.401;QD=14.33;ReadPosRankSum=0.864;SNPEFF_AMINO_ACID_CHANGE=S247;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97868170_97869249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437310    GT:AD:DP:GQ:PL    0/1:28,25:53:99:789,0,874
3    97887495    rs10212222    C    G    379.15    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.87;MQ0=3;MQRankSum=-3.718;QD=8.62;ReadPosRankSum=0.304;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356526    GT:AD:DP:GQ:PL    0/1:24,20:44:99:409,0,886
3    97887865    rs4133320    G    A    2656.76    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=4.244;DB;DP=179;Dels=0.0;FS=0.56;HRun=0;HaplotypeScore=6.045;MQ=51.96;MQ0=0;MQRankSum=-0.16;QD=14.84;ReadPosRankSum=-0.536;SNPEFF_AMINO_ACID_CHANGE=V108I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97887544_97888485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356526    GT:AD:DP:GQ:PL    0/1:83,95:179:99:2687,0,2384
3    97887985    rs4133321    T    A    1348.11    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.596;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=53.37;MQ0=0;MQRankSum=0.776;QD=13.62;ReadPosRankSum=0.928;SNPEFF_AMINO_ACID_CHANGE=S148T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97887544_97888485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356526    GT:AD:DP:GQ:PL    0/1:51,47:99:99:1378,0,1539
3    97888042    rs4133322    A    T    940.78    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.222;DB;DP=92;Dels=0.0;FS=4.723;HRun=0;HaplotypeScore=1.6553;MQ=41.8;MQ0=16;MQRankSum=-2.837;QD=10.23;ReadPosRankSum=0.652;SNPEFF_AMINO_ACID_CHANGE=T167S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97887544_97888485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356526    GT:AD:DP:GQ:PL    0/1:50,41:92:99:971,0,1170
3    97888177    rs148481518    G    A    753.78    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.555;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.63;MQ0=3;MQRankSum=1.804;QD=17.95;ReadPosRankSum=-0.072;SNPEFF_AMINO_ACID_CHANGE=V212M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97887544_97888485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356526    GT:AD:DP:GQ:PL    0/1:18,24:42:99:784,0,457
3    97888197    rs7623031    C    T    496.72    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=46;Dels=0.0;FS=2.638;HRun=0;HaplotypeScore=0.0;MQ=54.83;MQ0=0;MQRankSum=-0.704;QD=10.8;ReadPosRankSum=-0.609;SNPEFF_AMINO_ACID_CHANGE=Y218;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97887544_97888485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356526    GT:AD:DP:GQ:PL    0/1:28,18:46:99:527,0,907
3    97888337    rs13082608    C    T    913.20    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.4;DB;DP=68;Dels=0.0;FS=10.821;HRun=0;HaplotypeScore=0.9998;MQ=59.17;MQ0=0;MQRankSum=0.559;QD=13.43;ReadPosRankSum=1.249;SNPEFF_AMINO_ACID_CHANGE=P265L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97887544_97888485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356526    GT:AD:DP:GQ:PL    0/1:35,33:68:99:943,0,1020
3    97926221    rs7430016    T    C    389.09    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.78;DB;DP=47;Dels=0.0;FS=2.665;HRun=2;HaplotypeScore=0.0;MQ=52.63;MQ0=1;MQRankSum=-4.76;QD=8.28;ReadPosRankSum=0.214;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502817    GT:AD:DP:GQ:PL    0/1:28,19:47:99:419,0,934
3    97926354    rs9837299    A    G    1785.28    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.181;DB;DP=177;Dels=0.0;FS=27.228;HRun=1;HaplotypeScore=1.6809;MQ=47.15;MQ0=10;MQRankSum=-11.053;QD=10.09;ReadPosRankSum=1.808;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502817    GT:AD:DP:GQ:PL    0/1:95,82:177:99:1815,0,2917
3    97926625    rs9837684    A    G    797.36    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=3.52;DB;DP=90;Dels=0.0;FS=4.434;HRun=0;HaplotypeScore=0.5784;MQ=55.54;MQ0=1;MQRankSum=-2.436;QD=8.86;ReadPosRankSum=0.538;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502817    GT:AD:DP:GQ:PL    0/1:62,28:90:99:827,0,1720
3    97926693    rs9818544    C    T    181.14    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=3.046;DB;DP=68;Dels=0.0;FS=1.337;HRun=0;HaplotypeScore=9.9054;MQ=51.92;MQ0=1;MQRankSum=-5.652;QD=2.66;ReadPosRankSum=-0.147;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502817    GT:AD:DP:GQ:PL    0/1:54,14:68:99:211,0,1638
3    97926696    .    C    CTATTAATCTTGTCA    2506.88    PASS    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DP=69;FS=1.372;HRun=0;HaplotypeScore=710.4562;IndelType=I;MQ=52.82;MQ0=1;MQRankSum=-4.294;QD=35.81;ReadPosRankSum=1.106;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502817    GT:AD:DP:GQ:PL    0/1:58,10:69:99:2546,0,5871
3    97957115    rs13100993    T    C    332.89    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.135;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.026;QD=12.33;ReadPosRankSum=-0.797;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-325B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508616    GT:AD:DP:GQ:PL    0/1:15,12:27:99:363,0,499
3    97957349    rs6439722    G    A    2579.07    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=197;Dels=0.0;FS=6.003;HRun=3;HaplotypeScore=5.6294;MQ=59.45;MQ0=0;MQRankSum=-0.161;QD=13.09;ReadPosRankSum=-0.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514084    GT:AD:DP:GQ:PL    0/1:101,96:197:99:2609,0,3129
3    97957490    rs6439724    G    A    2800.22    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.975;DB;DP=168;Dels=0.0;FS=6.667;HRun=0;HaplotypeScore=0.5784;MQ=59.85;MQ0=0;MQRankSum=-0.08;QD=16.67;ReadPosRankSum=-1.168;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514084    GT:AD:DP:GQ:PL    0/1:77,89:168:99:2830,0,2238
3    97957539    rs6439725    C    T    2364.25    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.34;DB;DP=145;Dels=0.0;FS=0.62;HRun=1;HaplotypeScore=0.9973;MQ=59.87;MQ0=0;MQRankSum=0.329;QD=16.31;ReadPosRankSum=1.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514084    GT:AD:DP:GQ:PL    0/1:71,74:145:99:2394,0,2090
3    97958054    rs9851509    T    C    918.27    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.717;DB;DP=81;Dels=0.0;FS=0.886;HRun=2;HaplotypeScore=0.0;MQ=55.67;MQ0=0;MQRankSum=-3.666;QD=11.34;ReadPosRankSum=-0.155;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514084    GT:AD:DP:GQ:PL    0/1:46,35:81:99:948,0,1516
3    97958253    rs9847708    A    G    117.51    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.5;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514084    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:147,0,27
3    97958280    rs9828347    C    T    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5H7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514084    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
3    97983257    rs2132894    C    G    2322.84    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.459;DB;DP=165;Dels=0.0;FS=1.288;HRun=0;HaplotypeScore=1.57;MQ=58.38;MQ0=0;MQRankSum=-2.25;QD=14.08;ReadPosRankSum=-1.312;SNPEFF_AMINO_ACID_CHANGE=L43;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97983088_97984200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383696    GT:AD:DP:GQ:PL    0/1:83,82:165:99:2353,0,2754
3    97983391    rs2173236    C    T    2585.77    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=5.05;DB;DP=208;Dels=0.0;FS=6.23;HRun=2;HaplotypeScore=3.4509;MQ=57.07;MQ0=0;MQRankSum=-0.562;QD=12.43;ReadPosRankSum=0.487;SNPEFF_AMINO_ACID_CHANGE=S88L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97983088_97984200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383696    GT:AD:DP:GQ:PL    0/1:108,99:208:99:2616,0,3127
3    97983487    rs139831483    TTGTAACCAC    T    3101.98    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=7.936;DB;DP=138;FS=1.674;HRun=0;HaplotypeScore=1130.3151;IndelType=D;MQ=49.94;MQ0=0;MQRankSum=-7.962;QD=21.84;ReadPosRankSum=0.57;SNPEFF_AMINO_ACID_CHANGE=LVTT120L;SNPEFF_CODON_CHANGE=cttgtaaccact/ctt;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_3_97983088_97984200;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383696    GT:AD:DP:GQ:PL    0/1:101,41:138:99:3141,0,8884
3    97983561    rs9289564    G    C    1524.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.15;DB;DP=135;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.6751;MQ=54.0;MQ0=0;MQRankSum=-3.04;QD=11.29;ReadPosRankSum=-0.069;SNPEFF_AMINO_ACID_CHANGE=A145P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97983088_97984200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383696    GT:AD:DP:GQ:PL    0/1:75,60:135:99:1554,0,2358
3    97983711    rs9853887    T    C    1811.80    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.502;DB;DP=151;Dels=0.0;FS=0.61;HRun=1;HaplotypeScore=0.9983;MQ=59.39;MQ0=0;MQRankSum=0.738;QD=12.0;ReadPosRankSum=-1.206;SNPEFF_AMINO_ACID_CHANGE=C195R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97983088_97984200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383696    GT:AD:DP:GQ:PL    0/1:83,68:151:99:1842,0,2614
3    97983942    rs9853906    A    G    986.15    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.489;DB;DP=73;Dels=0.0;FS=8.229;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.328;QD=13.51;ReadPosRankSum=1.42;SNPEFF_AMINO_ACID_CHANGE=T272A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97983088_97984200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383696    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1016,0,1124
3    97983981    rs9871143    G    A    955.30    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.354;DB;DP=76;Dels=0.0;FS=1.931;HRun=1;HaplotypeScore=1.7323;MQ=56.74;MQ0=1;MQRankSum=0.727;QD=12.57;ReadPosRankSum=-1.598;SNPEFF_AMINO_ACID_CHANGE=D285N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_97983088_97984200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383696    GT:AD:DP:GQ:PL    0/1:41,35:76:99:985,0,1304
3    98001676    rs16839610    T    C    546.08    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.882;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.118;QD=10.11;ReadPosRankSum=-0.791;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355273    GT:AD:DP:GQ:PL    0/1:33,21:54:99:576,0,1104
3    98001777    rs72487753    G    C    1319.69    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.941;DB;DP=116;Dels=0.0;FS=3.61;HRun=0;HaplotypeScore=3.7198;MQ=59.8;MQ0=0;MQRankSum=0.818;QD=11.38;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=E16Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98001732_98002676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355273    GT:AD:DP:GQ:PL    0/1:70,46:116:99:1350,0,2373
3    98002419    rs16839214    A    G    770.03    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.146;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=1.306;QD=13.05;ReadPosRankSum=1.081;SNPEFF_AMINO_ACID_CHANGE=I230V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98001732_98002676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355273    GT:AD:DP:GQ:PL    0/1:32,27:59:99:800,0,1061
3    98002587    rs16839611    A    G    625.62    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.134;DB;DP=40;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.101;QD=15.64;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=I286V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98001732_98002676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355273    GT:AD:DP:GQ:PL    0/1:18,22:40:99:656,0,509
3    98073044    rs185693146    C    A    1985.39    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=5.829;DB;DP=145;Dels=0.0;FS=1.435;HRun=0;HaplotypeScore=0.9578;MQ=59.84;MQ0=0;MQRankSum=-0.126;QD=13.69;ReadPosRankSum=1.249;SNPEFF_AMINO_ACID_CHANGE=A116E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98072698_98073663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5K4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354924    GT:AD:DP:GQ:PL    0/1:79,65:145:99:2015,0,2072
3    98073591    rs11288615    TA    T    1751.86    PASS    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=7.75;DB;DP=167;DS;FS=2.681;HRun=7;HaplotypeScore=412.2145;IndelType=D;MQ=60.05;MQ0=0;MQRankSum=0.391;QD=10.49;ReadPosRankSum=0.521;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_98072698_98073663;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5K4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000354924    GT:AD:DP:GQ:PL    0/1:93,74:167:99:1791,0,2291
3    98110406    rs145803525    G    GA    954.26    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.662;DB;DP=68;FS=3.715;HRun=7;HaplotypeScore=154.851;IndelType=I;MQ=60.32;MQ0=0;MQRankSum=1.85;QD=14.03;ReadPosRankSum=0.408;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_98109510_98110475;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5K3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000383695    GT:AD:DP:GQ:PL    0/1:35,33:68:99:993,0,783
3    98250986    rs2230344    C    T    392.65    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.51;DB;DP=37;Dels=0.0;FS=1.32;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=10.61;ReadPosRankSum=-0.17;SNPEFF_AMINO_ACID_CHANGE=P37S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98250743_98251960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284311    GT:AD:DP:GQ:PL    0/1:22,15:37:99:423,0,695
3    98251207    rs146422549    C    A    756.59    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.489;DB;DP=44;Dels=0.0;FS=1.232;HRun=0;HaplotypeScore=0.9789;MQ=58.95;MQ0=0;MQRankSum=-1.046;QD=17.2;ReadPosRankSum=-0.849;SNPEFF_AMINO_ACID_CHANGE=S110;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98250743_98251960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284311    GT:AD:DP:GQ:PL    0/1:18,26:44:99:787,0,563
3    98252027    rs1529047    G    A    426.25    PASS    AB=0.227;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.88;QD=19.38;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284311    GT:AD:DP:GQ:PL    0/1:5,17:22:99:456,0,153
3    98307630    rs75450904    C    T    577.35    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.002;DB;DP=46;Dels=0.0;FS=4.112;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.141;QD=12.55;ReadPosRankSum=-1.053;SNPEFF_AMINO_ACID_CHANGE=V294I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98307557_98307698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPOX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264193    GT:AD:DP:GQ:PL    0/1:26,20:46:99:607,0,840
3    98489686    rs1440153    A    G    499.45    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.239;DB;DP=43;Dels=0.0;FS=1.321;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.876;QD=11.62;ReadPosRankSum=-1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ST3GAL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265261    GT:AD:DP:GQ:PL    0/1:23,20:43:99:529,0,703
3    98491619    rs2334230    G    T    593.70    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=2.192;DB;DP=29;Dels=0.0;FS=2.708;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.024;QD=20.47;ReadPosRankSum=-0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ST3GAL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480133    GT:AD:DP:GQ:PL    0/1:9,20:29:99:624,0,233
3    98503683    rs704585    C    T    286.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.355;QD=19.13;ReadPosRankSum=-0.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ST3GAL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466482    GT:AD:DP:GQ:PL    0/1:6,9:15:99:317,0,198
3    98503776    rs999147    A    G    627.74    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.019;DB;DP=67;Dels=0.0;FS=7.093;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.806;QD=9.37;ReadPosRankSum=-0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ST3GAL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466482    GT:AD:DP:GQ:PL    0/1:41,26:67:99:658,0,1300
3    98503941    rs62278486    G    A    270.44    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=19.32;ReadPosRankSum=0.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ST3GAL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460774    GT:AD:DP:GQ:PL    0/1:5,9:14:99:300,0,168
3    98503993    rs73136045    T    G    58.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=6.5;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ST3GAL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460774    GT:AD:DP:GQ:PL    0/1:5,4:9:88.49:88,0,186
3    98507134    rs73136057    C    A    916.48    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.431;DB;DP=61;Dels=0.0;FS=1.122;HRun=0;HaplotypeScore=1.8932;MQ=59.62;MQ0=0;MQRankSum=0.195;QD=15.02;ReadPosRankSum=-0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ST3GAL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460774    GT:AD:DP:GQ:PL    0/1:30,31:61:99:946,0,976
3    98518072    rs17270986    A    G    207.87    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.471;QD=14.85;ReadPosRankSum=1.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494614    GT:AD:DP:GQ:PL    0/1:6,8:14:99:238,0,191
3    98518160    rs113737993    T    TAA    1823.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.75;DB;DP=78;FS=8.813;HRun=10;HaplotypeScore=402.1144;IndelType=I;MQ=59.2;MQ0=0;MQRankSum=1.117;QD=23.38;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494614    GT:AD:DP:GQ:PL    1/1:13,32:78:99:1865,167,0
3    98518806    rs1866679    A    G    478.84    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.737;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.491;QD=14.51;ReadPosRankSum=-1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494614    GT:AD:DP:GQ:PL    0/1:17,15:33:99:509,0,601
3    98519481    rs1822017    G    A    1987.80    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.756;DB;DP=169;Dels=0.0;FS=8.243;HRun=0;HaplotypeScore=2.6386;MQ=59.18;MQ0=0;MQRankSum=-2.805;QD=11.69;ReadPosRankSum=1.445;SNPEFF_AMINO_ACID_CHANGE=S600;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98519423_98519560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326840    GT:AD:DP:GQ:PL    0/1:97,70:169:99:2018,0,3011
3    98519697    rs11374885    C    CT    42.04    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=28;FS=0.0;HRun=16;HaplotypeScore=266.4974;IndelType=I;MQ=51.13;MQ0=0;MQRankSum=-0.387;QD=1.5;ReadPosRankSum=-2.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494614    GT:AD:DP:GQ:PL    0/1:20,6:28:52.31:81,0,52
3    98520602    rs9860216    A    G    411.53    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.006;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;MQRankSum=-0.299;QD=16.46;ReadPosRankSum=0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326840    GT:AD:DP:GQ:PL    0/1:12,13:25:99:442,0,421
3    98531001    rs10612322    ATAAC    A    354.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=72.4146;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=-1.208;QD=22.16;ReadPosRankSum=1.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460008    GT:AD:DP:GQ:PL    0/1:8,8:16:99:394,0,585
3    98531342    rs9814819    A    G    606.07    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.021;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=59.3;MQ0=0;MQRankSum=-0.089;QD=9.18;ReadPosRankSum=-1.547;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326840    GT:AD:DP:GQ:PL    0/1:33,32:66:99:636,0,1018
3    98531446    rs278378    T    C    413.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326840    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:447,33,0
3    98536571    rs1440150    T    C    1596.96    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.348;DB;DP=123;Dels=0.0;FS=6.243;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-2.178;QD=12.98;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469648    GT:AD:DP:GQ:PL    0/1:69,54:123:99:1627,0,2101
3    98536990    rs9873932    C    T    114.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=16.29;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469648    GT:AD:DP:GQ:PL    0/1:3,4:7:79.92:144,0,80
3    98537835    rs9823430    T    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469648    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
3    98540820    rs2922213    A    G    320.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469648    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:354,27,0
3    98540866    rs7644946    G    A    171.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=12.26;ReadPosRankSum=-0.663;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469648    GT:AD:DP:GQ:PL    0/1:7,7:14:99:202,0,251
3    98540931    rs9843214    T    C    736.37    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.31;DB;DP=51;Dels=0.0;FS=7.414;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.291;QD=14.44;ReadPosRankSum=-0.136;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469648    GT:AD:DP:GQ:PL    0/1:26,25:51:99:766,0,847
3    98541012    rs866873    G    A    2497.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469648    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2531,184,0
3    98541799    rs828619    A    C    42.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486004    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
3    98544304    rs73138004    T    C    162.33    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=-0.278;QD=14.76;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ST3GAL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491912    GT:AD:DP:GQ:PL    0/1:4,7:11:99:192,0,125
3    98619997    rs17852693    G    C    55.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=11.07;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_98619966_98620533;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCBLD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404023    GT:AD:DP:GQ:PL    0/1:2,3:5:32.76:85,0,33
3    99513495    rs138724036    G    A    723.10    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DB;DP=73;Dels=0.0;FS=6.601;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.25;QD=9.91;ReadPosRankSum=-1.193;SNPEFF_AMINO_ACID_CHANGE=A250;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_99513074_99518070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL8A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261037    GT:AD:DP:GQ:PL    0/1:42,31:73:99:753,0,1233
3    99643176    rs793440    C    T    1597.52    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=4.698;DB;DP=127;Dels=0.0;FS=0.676;HRun=0;HaplotypeScore=5.3156;MQ=59.27;MQ0=0;MQRankSum=-1.183;QD=12.58;ReadPosRankSum=-0.445;SNPEFF_AMINO_ACID_CHANGE=R168H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_99643074_99643252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FILIP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331335    GT:AD:DP:GQ:PL    0/1:67,59:127:99:1628,0,2005
3    99886662    rs11537816    G    A    1191.07    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.014;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2604;MQ=59.7;MQ0=0;MQRankSum=0.81;QD=15.47;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=V122I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_99886582_99886684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000478909    GT:AD:DP:GQ:PL    0/1:38,39:77:99:1221,0,1082
3    99890783    rs192171324    G    A    304.86    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.341;QD=12.19;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421999    GT:AD:DP:GQ:PL    0/1:14,11:25:99:335,0,442
3    100015146    rs3772698    G    T    559.23    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=3.177;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6498;MQ=59.63;MQ0=0;MQRankSum=-0.864;QD=9.02;ReadPosRankSum=2.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344949    GT:AD:DP:GQ:PL    0/1:39,23:62:99:589,0,1298
3    100015166    rs3772697    C    T    345.69    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.193;DB;DP=44;Dels=0.0;FS=5.427;HRun=0;HaplotypeScore=0.9665;MQ=59.48;MQ0=0;MQRankSum=0.791;QD=7.86;ReadPosRankSum=-0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344949    GT:AD:DP:GQ:PL    0/1:27,17:44:99:376,0,981
3    100016726    rs3832199    A    AT    287.65    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.534;DB;DP=29;FS=0.0;HRun=10;HaplotypeScore=64.0284;IndelType=I;MQ=60.37;MQ0=0;MQRankSum=1.159;QD=9.92;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344949    GT:AD:DP:GQ:PL    0/1:15,13:29:99:327,0,199
3    100029173    rs4928168    A    G    507.33    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.476;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9075;MQ=60.0;MQ0=0;MQRankSum=1.045;QD=15.85;ReadPosRankSum=-0.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344949    GT:AD:DP:GQ:PL    0/1:14,18:32:99:537,0,436
3    100030628    rs78488980    A    AT    890.49    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.404;DB;DP=76;FS=0.0;HRun=8;HaplotypeScore=164.8638;IndelType=I;MQ=60.28;MQ0=0;MQRankSum=0.501;QD=11.72;ReadPosRankSum=0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496167    GT:AD:DP:GQ:PL    0/1:43,33:76:99:930,0,830
3    100034849    rs4928169    A    T    74.18    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=5.3;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344949    GT:AD:DP:GQ:PL    0/1:10,4:14:99:104,0,352
3    100037795    rs1214369    G    C    142.47    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=20.35;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344949    GT:AD:DP:GQ:PL    0/1:2,5:7:60.70:172,0,61
3    100053684    rs3830303    C    CG    91.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=10;FS=0.0;HRun=5;HaplotypeScore=39.5287;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=0.922;QD=9.17;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394140    GT:AD:DP:GQ:PL    0/1:5,5:10:99:131,0,105
3    100064902    rs2289506    C    T    67.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460317    GT:AD:DP:GQ:PL    0/1:2,3:5:67.28:97,0,67
3    100071070    rs13082297    G    C    74.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.58;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478856    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,132
3    100086861    rs277640    T    C    445.49    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.645;DB;DP=34;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=13.1;ReadPosRankSum=-0.127;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM70A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483945    GT:AD:DP:GQ:PL    0/1:18,16:34:99:475,0,578
3    100092526    rs11384494    A    AG    344.27    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=3.481;DB;DP=28;FS=0.0;HRun=1;HaplotypeScore=134.2022;IndelType=I;MQ=55.74;MQ0=0;MQRankSum=-0.564;QD=12.3;ReadPosRankSum=1.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM70A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492171    GT:AD:DP:GQ:PL    0/1:19,9:28:99:383,0,578
3    100092528    rs3832198    T    TGCA    534.79    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=3.611;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=126.5531;IndelType=I;MQ=56.35;MQ0=0;MQRankSum=-0.377;QD=20.57;ReadPosRankSum=2.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM70A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492171    GT:AD:DP:GQ:PL    0/1:17,9:26:99:574,0,872
3    100094154    rs13071905    G    T    200.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.12;QD=13.37;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM70A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492171    GT:AD:DP:GQ:PL    0/1:6,9:15:99:231,0,195
3    100094208    rs13073252    C    T    118.13    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=19.69;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM70A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492171    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:148,0,27
3    100148590    .    A    G    2233.79    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.823;DP=173;Dels=0.0;FS=3.496;HRun=1;HaplotypeScore=1.841;MQ=59.47;MQ0=0;MQRankSum=-0.2;QD=12.91;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=D6G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100148541_100148729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383693    GT:AD:DP:GQ:PL    0/1:91,82:173:99:2264,0,2492
3    100170600    .    A    ATCGATCGTCTGACCGTCT    2602.34    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.39;DP=58;FS=1.112;HRun=0;HaplotypeScore=1564.3484;IndelType=I;MQ=49.56;MQ0=0;MQRankSum=-0.353;QD=44.87;ReadPosRankSum=-2.111;SNPEFF_AMINO_ACID_CHANGE=H65HRSSDRL;SNPEFF_CODON_CHANGE=cat/caTCGATCGTCTGACCGTCTt;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_3_100170563_100170793;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383693    GT:AD:DP:GQ:PL    0/1:13,1:58:99:2641,0,4042
3    100170601    .    T    G    298.10    HaplotypeScoreFilter13    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.84;DP=58;Dels=0.0;FS=8.507;HRun=0;HaplotypeScore=21.9915;MQ=49.56;MQ0=0;MQRankSum=2.204;QD=5.14;ReadPosRankSum=-4.507;SNPEFF_AMINO_ACID_CHANGE=H65Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100170563_100170793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383693    GT:AD:DP:GQ:PL    0/1:42,11:58:99:328,0,676
3    100170825    rs6797397    G    A    988.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383693    GT:AD:DP:GQ:PL    1/1:0,28:29:81.23:1022,81,0
3    100174722    rs1132022    G    A    3133.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_AMINO_ACID_CHANGE=E163;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100174621_100175163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383693    GT:AD:DP:GQ:PL    1/1:0,89:90:99:3167,235,0
3    100238231    rs71751636    ATG    A    144.29    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=39.8829;IndelType=D;MQ=53.81;MQ0=0;MQRankSum=-0.365;QD=13.12;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323523    GT:AD:DP:GQ:PL    0/1:5,6:11:99:183,0,160
3    100275924    rs7631877    A    G    273.43    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.936;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.021;QD=13.02;ReadPosRankSum=0.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462884    GT:AD:DP:GQ:PL    0/1:10,11:21:99:303,0,310
3    100277476    rs7645690    G    C    457.81    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.553;DB;DP=54;Dels=0.0;FS=3.869;HRun=0;HaplotypeScore=3.7006;MQ=59.57;MQ0=0;MQRankSum=-0.903;QD=8.48;ReadPosRankSum=1.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449609    GT:AD:DP:GQ:PL    0/1:36,17:54:99:488,0,1129
3    100277514    rs7645700    G    A    390.32    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.418;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=59.39;MQ0=0;MQRankSum=-0.627;QD=10.27;ReadPosRankSum=-1.672;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449609    GT:AD:DP:GQ:PL    0/1:23,15:38:99:420,0,790
3    100287764    rs28722928    T    C    2038.77    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.093;DB;DP=125;Dels=0.0;FS=3.279;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.791;QD=16.31;ReadPosRankSum=-0.196;SNPEFF_AMINO_ACID_CHANGE=Y229;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100287666_100287811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM45A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323523    GT:AD:DP:GQ:PL    0/1:56,69:125:99:2069,0,1768
3    100287901    rs6763638    T    G    815.31    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.346;DB;DP=48;Dels=0.0;FS=2.973;HRun=3;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.463;QD=16.99;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323523    GT:AD:DP:GQ:PL    0/1:21,27:48:99:845,0,639
3    100295733    rs7427360    A    G    385.55    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.099;DB;DP=39;Dels=0.0;FS=3.647;HRun=0;HaplotypeScore=0.9996;MQ=55.08;MQ0=0;MQRankSum=-0.443;QD=9.89;ReadPosRankSum=-1.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323523    GT:AD:DP:GQ:PL    0/1:23,16:39:99:416,0,756
3    100295909    rs5851214    A    ATTGTCT    956.73    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.528;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=121.5643;IndelType=I;MQ=54.77;MQ0=0;MQRankSum=-1.352;QD=35.43;ReadPosRankSum=-1.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488904    GT:AD:DP:GQ:PL    0/1:15,11:27:99:996,0,572
3    100354683    rs1520652    G    A    900.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:933,69,0
3    100354698    rs1718281    T    A    168.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.182;DB;DP=16;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.91;QD=10.56;ReadPosRankSum=-0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    0/1:4,12:16:88.98:199,0,89
3    100356027    rs4144968    C    G    514.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:548,42,0
3    100368425    rs7622958    A    G    136.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=13.64;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    0/1:5,5:10:99:166,0,178
3    100368546    rs61730367    A    G    645.29    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=41;Dels=0.0;FS=6.463;HRun=0;HaplotypeScore=1.7219;MQ=59.54;MQ0=0;MQRankSum=0.244;QD=15.74;ReadPosRankSum=0.135;SNPEFF_AMINO_ACID_CHANGE=K130R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100368539_100368651;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000475887    GT:AD:DP:GQ:PL    0/1:19,22:41:99:675,0,638
3    100368692    rs1144118    A    G    1084.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1118,81,0
3    100374073    rs12636989    T    C    405.13    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.685;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.58;QD=23.83;ReadPosRankSum=0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    0/1:5,12:17:99:435,0,151
3    100374121    rs12633554    C    T    100.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=14.39;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    0/1:3,4:7:93.10:131,0,93
3    100374740    rs9866111    T    C    661.62    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=54;Dels=0.0;FS=2.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.019;QD=12.25;ReadPosRankSum=0.763;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    0/1:30,24:54:99:692,0,980
3    100387709    rs1144110    A    G    605.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:639,48,0
3    100388140    rs1145337    A    C    41.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.69;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
3    100388149    rs1145336    G    T    41.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.69;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273352    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
3    100413978    .    C    T    175.56    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=15.96;ReadPosRankSum=1.031;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481506    GT:AD:DP:GQ:PL    0/1:5,6:11:99:206,0,156
3    100438784    rs1503838    A    G    1112.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240851    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1146,90,0
3    100447416    rs1143775    T    A    57.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.9998;MQ=57.66;MQ0=0;QD=5.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240851    GT:AD:DP:GQ:PL    1/1:0,10:10:9.02:90,9,0
3    100455139    rs3773921    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463568    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    100455609    rs3830581    TG    T    1091.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=1;HaplotypeScore=70.3336;IndelType=D;MQ=60.0;MQ0=0;QD=40.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463568    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1134,81,0
3    100467018    rs11353    T    C    3631.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=L278P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100466993_100467807;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443578    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3631,277,0
3    100558416    rs9841585    T    C    109.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.94;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=T46A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100558413_100558460;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533795    GT:AD:DP:GQ:PL    0/1:6,4:10:99:139,0,185
3    100560745    rs5851226    GA    G    99.39    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=1.023;DB;DP=23;FS=0.0;HRun=15;HaplotypeScore=207.9499;IndelType=D;MQ=54.77;MQ0=0;MQRankSum=0.651;QD=4.32;ReadPosRankSum=1.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    0/1:13,6:23:99:138,0,158
3    100566571    rs3806656    A    G    886.89    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.588;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.771;MQ=60.0;MQ0=0;MQRankSum=-0.541;QD=11.67;ReadPosRankSum=-0.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    0/1:37,33:76:99:917,0,940
3    100567592    rs6773877    T    C    593.49    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=50;Dels=0.0;FS=2.359;HRun=0;HaplotypeScore=3.5773;MQ=58.66;MQ0=0;MQRankSum=-0.834;QD=11.87;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    0/1:27,22:50:99:623,0,906
3    100570907    rs1966047    A    G    147.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:180,15,0
3    100583651    rs10711419    GA    G    1285.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.199;DB;DP=65;FS=2.982;HRun=11;HaplotypeScore=191.7096;IndelType=D;MQ=58.81;MQ0=0;MQRankSum=2.283;QD=19.78;ReadPosRankSum=0.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    1/1:8,56:65:99:1327,118,0
3    100585694    rs3732899    C    G    1838.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.21;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1871,144,0
3    100593477    rs9844826    C    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527258    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    100594326    rs3839090    CGGCATA    C    1409.50    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=6.043;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=351.3306;IndelType=D;MQ=50.08;MQ0=0;MQRankSum=-6.372;QD=23.49;ReadPosRankSum=2.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527258    GT:AD:DP:GQ:PL    0/1:38,22:60:99:1449,0,3748
3    100604739    rs3821725    G    A    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530539    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
3    100605206    rs1987384    A    G    1203.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    1/1:0,41:41:96.28:1237,96,0
3    100617532    rs41273553    T    C    164.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.888;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.5;QD=6.84;ReadPosRankSum=0.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530236    GT:AD:DP:GQ:PL    0/1:16,8:24:99:194,0,583
3    100617668    rs34999788    G    T    1720.54    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.744;DB;DP=130;Dels=0.0;FS=2.338;HRun=0;HaplotypeScore=1.9998;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=13.23;ReadPosRankSum=1.225;SNPEFF_AMINO_ACID_CHANGE=S140;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100617606_100617738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    0/1:71,59:130:99:1751,0,2149
3    100621426    rs2576365    C    A    501.46    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.808;DB;DP=45;Dels=0.0;FS=1.62;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.181;QD=11.14;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    0/1:28,17:45:99:531,0,936
3    100621683    rs41273557    T    A    35.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.99;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:66,0,32
3    100621684    rs79265689    C    A    33.24    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=8.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:63,0,32
3    100630604    rs2576388    T    C    2477.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2510,184,0
3    100645475    rs2304513    G    T    65.17    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.15;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284322    GT:AD:DP:GQ:PL    0/1:5,3:8:95.17:95,0,183
3    100944932    rs75852013    A    G    143.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=15;Dels=0.0;FS=6.56;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=9.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    0/1:10,5:15:99:173,0,262
3    100949842    rs348867    G    A    3289.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_AMINO_ACID_CHANGE=L1127;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100949801_100949989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3289,250,0
3    100950161    rs348868    A    C    271.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:304,24,0
3    100963154    rs571391    G    A    536.22    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.697;DB;DP=30;Dels=0.0;FS=17.711;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.292;QD=17.87;ReadPosRankSum=0.022;SNPEFF_AMINO_ACID_CHANGE=T674I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_100962373_100963631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    0/1:11,19:30:99:566,0,354
3    100976219    rs348885    C    G    606.46    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.843;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=-0.843;QD=16.39;ReadPosRankSum=-1.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    0/1:16,21:37:99:636,0,474
3    100976755    rs7613046    G    C    385.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:418,33,0
3    100994377    rs2271972    T    C    85.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=10.69;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    0/1:3,5:8:94.51:115,0,95
3    101010257    rs73156061    G    A    197.03    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.811;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.543;QD=10.95;ReadPosRankSum=1.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    0/1:11,7:18:99:227,0,333
3    101022876    rs62282886    T    C    293.53    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.609;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.448;QD=10.87;ReadPosRankSum=0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193391    GT:AD:DP:GQ:PL    0/1:17,10:27:99:324,0,574
3    101038297    rs545322    G    A    339.59    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.669;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.232;QD=16.17;ReadPosRankSum=1.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:10,11:21:99:370,0,327
3    101038339    rs546090    G    A    621.28    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=5.029;DB;DP=45;Dels=0.0;FS=4.606;HRun=0;HaplotypeScore=0.9997;MQ=59.49;MQ0=0;MQRankSum=1.964;QD=13.81;ReadPosRankSum=-1.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:23,22:45:99:651,0,701
3    101039107    rs573908    A    C    222.09    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=15;Dels=0.0;FS=11.139;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.428;QD=14.81;ReadPosRankSum=0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:7,8:15:99:252,0,247
3    101046671    rs9849770    C    A    190.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.902;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.946;QD=6.34;ReadPosRankSum=-1.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:20,10:30:99:220,0,645
3    101051794    rs2068494    C    T    242.52    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.17;QD=8.36;ReadPosRankSum=-0.574;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460107    GT:AD:DP:GQ:PL    0/1:19,10:29:99:273,0,707
3    101066964    rs7636229    T    C    291.97    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.674;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.372;QD=15.37;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:8,11:19:99:322,0,274
3    101066992    rs56704745    A    T    334.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    1/1:0,15:15:36.08:368,36,0
3    101067067    rs7622500    C    A    31.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.98;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:2,2:4:61.92:62,0,68
3    101080694    rs7616677    T    C    717.36    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.436;DB;DP=47;Dels=0.0;FS=8.463;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.905;QD=15.26;ReadPosRankSum=-0.181;SNPEFF_AMINO_ACID_CHANGE=E332;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_101080559_101080705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358203    GT:AD:DP:GQ:PL    0/1:23,24:47:99:747,0,685
3    101085208    rs75513564    A    G    410.07    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.149;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.184;QD=21.58;ReadPosRankSum=-0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:6,13:19:99:440,0,197
3    101085413    rs939443    G    A    919.79    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=2.928;DB;DP=55;Dels=0.0;FS=3.743;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=16.72;ReadPosRankSum=1.383;SNPEFF_AMINO_ACID_CHANGE=T229;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_101085274_101085613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358203    GT:AD:DP:GQ:PL    0/1:24,31:55:99:950,0,698
3    101136340    rs9822356    C    T    335.31    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.874;DB;DP=25;Dels=0.0;FS=3.565;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=13.41;ReadPosRankSum=0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:14,11:25:99:365,0,512
3    101136385    rs4482646    C    A    852.03    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.796;DB;DP=50;Dels=0.0;FS=2.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.234;QD=17.04;ReadPosRankSum=-0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:23,27:50:99:882,0,747
3    101177644    rs12496159    A    C    212.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.276;QD=15.15;ReadPosRankSum=1.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:7,7:14:99:242,0,191
3    101177901    rs151020849    GA    G    658.64    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=5.815;DB;DP=97;FS=2.984;HRun=10;HaplotypeScore=278.7552;IndelType=D;MQ=60.33;MQ0=0;MQRankSum=-0.923;QD=6.79;ReadPosRankSum=-0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:57,37:97:99:698,0,1192
3    101212889    rs3846088    C    T    188.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=18.87;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:4,6:10:99:219,0,131
3    101212953    rs3846089    A    G    50.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=12.59;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:1,3:4:23.24:80,0,23
3    101212954    rs3846090    C    T    38.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=9.75;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:1,3:4:25.78:69,0,26
3    101219818    rs7619540    G    A    243.33    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.772;DB;DP=15;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=16.22;ReadPosRankSum=-1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:7,8:15:99:273,0,229
3    101219889    rs7621830    G    C    465.39    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=32;Dels=0.0;FS=3.732;HRun=0;HaplotypeScore=0.7887;MQ=59.28;MQ0=0;MQRankSum=1.473;QD=14.54;ReadPosRankSum=-2.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:15,17:32:99:495,0,473
3    101231871    rs9681493    C    T    576.96    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.95;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.091;QD=10.49;ReadPosRankSum=1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:32,23:55:99:607,0,836
3    101231921    rs9682313    T    C    538.88    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.885;DB;DP=81;Dels=0.0;FS=4.935;HRun=1;HaplotypeScore=0.7887;MQ=57.33;MQ0=0;MQRankSum=0.402;QD=6.65;ReadPosRankSum=-1.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    0/1:53,28:81:99:569,0,1747
3    101232093    rs55749605    C    A    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.2;MQ0=0;QD=10.41;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314261    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:115,9,0
3    101283792    rs3762735    C    G    1145.33    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=78;Dels=0.0;FS=1.931;HRun=0;HaplotypeScore=0.0;MQ=58.51;MQ0=0;MQRankSum=0.782;QD=14.68;ReadPosRankSum=-0.381;SNPEFF_AMINO_ACID_CHANGE=P56R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_101283614_101285290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RG9MTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309922    GT:AD:DP:GQ:PL    0/1:31,47:78:99:1175,0,982
3    101295502    rs35917542    T    A    882.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.009;DB;DP=54;Dels=0.0;FS=8.01;HRun=0;HaplotypeScore=0.0;MQ=57.09;MQ0=0;MQRankSum=0.738;QD=16.34;ReadPosRankSum=-0.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265260    GT:AD:DP:GQ:PL    0/1:27,27:54:99:912,0,866
3    101295562    rs80342763    T    C    975.26    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.326;DB;DP=88;Dels=0.0;FS=4.611;HRun=0;HaplotypeScore=3.7827;MQ=56.96;MQ0=1;MQRankSum=1.094;QD=11.08;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265260    GT:AD:DP:GQ:PL    0/1:50,36:88:99:1005,0,1605
3    101295584    rs4234491    C    T    3368.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6647;MQ=56.87;MQ0=1;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265260    GT:AD:DP:GQ:PL    1/1:0,101:102:99:3369,247,0
3    101304414    rs3804776    G    T    485.48    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.361;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.84;MQ0=0;MQRankSum=-0.371;QD=24.27;ReadPosRankSum=-1.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265260    GT:AD:DP:GQ:PL    0/1:6,14:20:99:515,0,191
3    101370551    rs78127229    T    C    207.94    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.386;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7866;MQ=50.2;MQ0=0;MQRankSum=-0.022;QD=6.5;ReadPosRankSum=-0.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471673    GT:AD:DP:GQ:PL    0/1:15,17:32:99:238,0,326
3    101373480    rs34508490    A    G    345.29    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.802;DB;DP=37;Dels=0.0;FS=2.69;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.448;QD=9.33;ReadPosRankSum=-1.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471673    GT:AD:DP:GQ:PL    0/1:24,13:37:99:375,0,829
3    101389864    rs9837549    T    C    250.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312938    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
3    101399910    rs148057621    GA    G    529.68    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.911;DB;DP=70;FS=0.0;HRun=12;HaplotypeScore=203.0348;IndelType=D;MQ=59.91;MQ0=0;MQRankSum=-1.59;QD=7.57;ReadPosRankSum=1.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084198.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536865    GT:AD:DP:GQ:PL    0/1:35,33:70:99:569,0,758
3    101404813    rs2303473    A    G    385.42    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.5;MQ0=0;MQRankSum=0.356;QD=10.42;ReadPosRankSum=-0.974;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPL24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470961    GT:AD:DP:GQ:PL    0/1:22,15:37:99:415,0,774
3    101443461    rs994573    T    C    670.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489172    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:703,51,0
3    101476462    .    C    T    803.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.414;DP=52;Dels=0.0;FS=11.952;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.407;QD=15.45;ReadPosRankSum=0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462076    GT:AD:DP:GQ:PL    0/1:24,28:52:99:833,0,770
3    101484335    rs2625282    G    A    2624.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=Q787;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_101483691_101484822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP97;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000494050    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2657,214,0
3    101504624    rs2625289    A    C    599.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487830    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:633,48,0
3    101571550    rs587555    A    G    720.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461724    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:753,57,0
3    101572822    rs2925334    C    G    172.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461724    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
3    101573345    rs34931768    AT    A    63    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;FS=0.0;HRun=15;HaplotypeScore=54.0611;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=1.092;QD=4.85;ReadPosRankSum=-0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461724    GT:AD:DP:GQ:PL    0/1:4,7:13:82.03:102,0,82
3    101574503    rs677011    G    A    1141.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461724    GT:AD:DP:GQ:PL    1/1:0,30:31:87.26:1174,87,0
3    101575877    rs75713821    AT    A    218.20    QDFilter2    AB=0.942;AC=1;AF=0.50;AN=2;BaseQRankSum=3.798;DB;DP=129;FS=109.215;HRun=17;HaplotypeScore=807.1535;IndelType=D;MQ=51.87;MQ0=0;MQRankSum=-0.29;QD=1.69;ReadPosRankSum=4.049;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461724    GT:AD:DP:GQ:PL    0/1:121,8:129:93.43:257,0,93
3    101575881    rs113782866    T    TC    2183.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DB;DP=135;FS=63.318;HRun=0;HaplotypeScore=676.8222;IndelType=I;MQ=51.47;MQ0=0;MQRankSum=-1.197;QD=16.18;ReadPosRankSum=1.824;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461724    GT:AD:DP:GQ:PL    1/1:130,5:135:99:2226,251,0
3    101575882    rs595788    T    C    2835.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.229;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.9089;MQ=51.47;MQ0=0;MQRankSum=0.452;QD=21.0;ReadPosRankSum=0.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461724    GT:AD:DP:GQ:PL    1/1:13,121:135:99:2868,124,0
3    101576029    rs3217713    T    TACTTTTAGAAAGCTTTAATAACC    33871.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;FS=0.0;HRun=0;HaplotypeScore=1957.1172;IndelType=I;MQ=34.69;MQ0=0;QD=250.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465476    GT:AD:DP:GQ:PL    1/1:104,20:135:99:33871,388,0
3    101576030    .    A    T    133.62    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.948;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.61;DP=135;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=28.8954;MQ=34.69;MQ0=0;MQRankSum=4.267;QD=0.99;ReadPosRankSum=-4.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465476    GT:AD:DP:GQ:PL    0/1:128,7:135:99:164,0,665
3    101576175    rs14134    T    C    1918.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=52.7;MQ0=0;QD=33.67;SNPEFF_AMINO_ACID_CHANGE=L537;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_101576136_101576303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326151    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1952,156,0
3    101576404    rs622122    A    T    282.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465476    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:316,24,0
3    101577972    rs11443767    G    GC    232.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=10.919;IndelType=I;MQ=63.51;MQ0=0;QD=38.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465476    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:275,18,0
3    101713472    rs12629299    C    A    703.30    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.497;DB;DP=38;Dels=0.0;FS=1.371;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=18.51;ReadPosRankSum=-0.045;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-221J22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465215    GT:AD:DP:GQ:PL    0/1:14,24:38:99:733,0,479
3    102157283    rs79648917    GT    G    290.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.288;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=63.5501;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=14.53;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306176    GT:AD:DP:GQ:PL    0/1:10,10:20:99:330,0,390
3    102157365    rs6784362    A    T    455.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.584;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.688;QD=13.4;ReadPosRankSum=0.448;SNPEFF_AMINO_ACID_CHANGE=I12F;SNPEFF_CODON_CHANGE=Att/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_102157324_102157437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZPLD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000466937    GT:AD:DP:GQ:PL    0/1:17,17:34:99:485,0,481
3    102157417    rs6784389    A    G    227.75    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.702;DB;DP=22;Dels=0.0;FS=9.558;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.34;QD=10.35;ReadPosRankSum=-1.195;SNPEFF_AMINO_ACID_CHANGE=N29S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_102157324_102157437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZPLD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000466937    GT:AD:DP:GQ:PL    0/1:13,9:22:99:258,0,448
3    102172106    rs11708291    T    C    71.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=11.88;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306176    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,110
3    102174936    rs62272486    G    A    139.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=13.95;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306176    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,179
3    102176799    rs75957873    C    T    254.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.059;QD=16.98;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306176    GT:AD:DP:GQ:PL    0/1:6,9:15:99:285,0,210
3    102181131    rs12054046    A    G    532.03    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.952;DB;DP=45;Dels=0.0;FS=13.202;HRun=0;HaplotypeScore=1.6598;MQ=53.63;MQ0=0;MQRankSum=2.607;QD=11.82;ReadPosRankSum=-0.894;SNPEFF_AMINO_ACID_CHANGE=T197A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_102181125_102181222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZPLD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000466937    GT:AD:DP:GQ:PL    0/1:24,20:45:99:562,0,704
3    102195680    rs7627117    C    A    148.18    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.17;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306176    GT:AD:DP:GQ:PL    0/1:2,5:7:61.58:178,0,62
3    103781738    rs9859698    C    G    290.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=19.36;ReadPosRankSum=1.898;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-40M23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478270    GT:AD:DP:GQ:PL    0/1:5,10:15:99:320,0,164
3    103781849    rs9860145    G    A    515.30    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.916;DB;DP=54;Dels=0.0;FS=6.404;HRun=1;HaplotypeScore=0.9578;MQ=59.16;MQ0=0;MQRankSum=1.225;QD=9.37;ReadPosRankSum=0.299;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-40M23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478270    GT:AD:DP:GQ:PL    0/1:33,21:54:99:545,0,975
3    103782444    rs79768431    T    C    91.92    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.182;QD=5.74;ReadPosRankSum=-0.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-40M23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478270    GT:AD:DP:GQ:PL    0/1:12,4:16:99:122,0,405
3    103782849    rs13324427    G    A    716.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-40M23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478270    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:750,54,0
3    105086085    rs6437585    C    T    104.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=14.99;ReadPosRankSum=0.937;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470756    GT:AD:DP:GQ:PL    0/1:3,4:7:87.84:135,0,88
3    105238890    rs11291806    CT    C    1060.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=11;HaplotypeScore=313.57;IndelType=D;MQ=60.62;MQ0=0;QD=21.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306107    GT:AD:DP:GQ:PL    1/1:2,48:50:99:1103,140,0
3    105252377    rs2171146    G    C    589.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306107    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:622,45,0
3    105252687    rs2399049    G    A    121.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306107    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
3    105259092    .    A    C    46.37    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.892;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.8795;MQ=55.8;MQ0=0;MQRankSum=-1.468;QD=2.73;ReadPosRankSum=2.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460954    GT:AD:DP:GQ:PL    0/1:6,11:17:76.36:76,0,149
3    105260596    rs599278    T    C    1661.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=A275;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_105260477_105260609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000486979    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1694,123,0
3    105260798    rs598425    G    T    158.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460954    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
3    105264176    rs34926152    G    T    2136.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3638;MQ=59.31;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=M316I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_105264067_105264179;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000486979    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2170,163,0
3    105266536    rs10933821    T    C    282.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481337    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:315,24,0
3    105389153    rs11713094    A    G    809.55    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.63;DB;DP=67;Dels=0.0;FS=5.316;HRun=2;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=0.222;QD=12.08;ReadPosRankSum=-0.061;SNPEFF_AMINO_ACID_CHANGE=P210;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_105389077_105389196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394030    GT:AD:DP:GQ:PL    0/1:34,33:67:99:840,0,1098
3    105404031    rs16851440    T    C    75.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.6;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,101
3    105412286    rs56167906    C    CTT    309.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=15.3959;IndelType=I;MQ=63.02;MQ0=0;QD=44.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:351,18,0
3    105422844    rs2305037    C    T    581.33    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=0.866;DB;DP=31;Dels=0.0;FS=6.537;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.627;QD=18.75;ReadPosRankSum=-2.176;SNPEFF_AMINO_ACID_CHANGE=T527;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_105422832_105423017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    0/1:10,21:31:99:611,0,309
3    105423088    rs1548056    T    C    476.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:510,39,0
3    105438806    rs7624400    G    A    433.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545639    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:466,36,0
3    105438957    rs2305036    T    G    645.58    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.033;QD=14.03;ReadPosRankSum=1.22;SNPEFF_AMINO_ACID_CHANGE=L447;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_105438891_105439094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    0/1:22,24:46:99:676,0,672
3    105439026    rs2305035    G    A    537.37    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.112;DB;DP=37;Dels=0.0;FS=5.62;HRun=0;HaplotypeScore=1.8938;MQ=60.0;MQ0=0;MQRankSum=-1.143;QD=14.52;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=D424;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_105438891_105439094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    0/1:17,20:37:99:567,0,577
3    105452751    rs1992520    C    T    289.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    1/1:0,8:9:24.08:322,24,0
3    105453034    rs6768096    A    G    281.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
3    105455955    rs2289746    T    C    462.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.22;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;MQRankSum=-1.488;QD=17.15;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    0/1:12,15:27:99:493,0,415
3    105495432    rs9809911    G    T    1120.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1153,87,0
3    105586538    rs2221379    G    A    158.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264122    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:191,15,0
3    107096547    rs709564    G    A    769.18    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=1.607;DB;DP=62;Dels=0.0;FS=0.996;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.722;QD=12.41;ReadPosRankSum=-0.89;SNPEFF_AMINO_ACID_CHANGE=R38Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_107096188_107097481;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261058    GT:AD:DP:GQ:PL    0/1:37,25:62:99:799,0,1159
3    107451907    rs4855764    C    T    177    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413213    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
3    107510197    .    A    ATAAG    1464.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.073;DP=27;FS=0.0;HRun=0;HaplotypeScore=95.1668;IndelType=I;MQ=56.86;MQ0=0;MQRankSum=0.578;QD=54.26;ReadPosRankSum=1.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325767    GT:AD:DP:GQ:PL    1/1:6,21:27:27.73:1507,28,0
3    107519843    rs1532325    T    C    984.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473542    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:1018,75,0
3    107524097    rs9842741    A    C    2162.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.597;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9467;MQ=59.52;MQ0=0;MQRankSum=1.374;QD=37.29;ReadPosRankSum=-0.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325767    GT:AD:DP:GQ:PL    1/1:1,57:58:99:2196,131,0
3    107769230    rs696364    C    T    327.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355354    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
3    107769791    rs114418764    T    G    227.94    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=57.23;MQ0=0;MQRankSum=-0.241;QD=13.41;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355354    GT:AD:DP:GQ:PL    0/1:9,8:17:99:258,0,303
3    107774196    rs186183032    G    C    71.04    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=8.88;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355354    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,176
3    107776511    rs709436    C    T    386.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355354    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:420,30,0
3    107881138    rs1135937    T    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468021    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    107881152    rs58273586    T    C    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468021    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    107882291    rs28494587    G    T    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468021    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
3    107882357    rs28483736    C    T    256.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468021    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:289,21,0
3    107882643    rs327168    G    A    928.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468021    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:962,72,0
3    107884132    rs62264149    T    C    300.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468021    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:334,24,0
3    107884211    rs327167    T    C    643.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468021    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:676,51,0
3    107884269    rs62264150    A    G    1220.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468021    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1254,99,0
3    107885875    rs2305551    A    G    1307.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264538    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1341,102,0
3    107886925    rs17232836    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264538    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    107910327    rs60290956    C    CTT    759.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=14;HaplotypeScore=290.7807;IndelType=I;MQ=51.9;MQ0=0;QD=19.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264538    GT:AD:DP:GQ:PL    1/1:11,14:39:82.85:802,83,0
3    107937286    rs1289760    A    G    1994.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492106    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2027,163,0
3    107937360    rs56273515    C    T    3112.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492106    GT:AD:DP:GQ:PL    1/1:0,90:92:99:3146,232,0
3    107937408    rs1135897    C    T    2692.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=L156;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_107937382_107937500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264538    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2725,205,0
3    107938584    rs1289753    C    A    368.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264538    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
3    108039298    rs114958262    C    T    4079.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.503;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=32.9;ReadPosRankSum=-1.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357759    GT:AD:DP:GQ:PL    1/1:1,123:124:99:4080,259,0
3    108070556    rs9846218    T    C    1273.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357759    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1306,99,0
3    108072243    rs6766283    C    T    4534.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357759    GT:AD:DP:GQ:PL    1/1:1,128:129:99:4534,343,0
3    108072298    rs6779254    T    C    5564.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.86;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=I30T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108072274_108072627;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357759    GT:AD:DP:GQ:PL    1/1:0,161:161:99:5564,412,0
3    108072704    rs6779650    T    C    1531.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462629    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1564,132,0
3    108096098    rs1463426    C    G    666.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:699,51,0
3    108096227    rs1463425    G    C    447.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491820    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:480,36,0
3    108099148    rs147559157    G    A    36.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.07;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357759    GT:AD:DP:GQ:PL    0/1:4,2:6:66.40:66,0,148
3    108102586    rs34041576    T    TA    261.25    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.291;DB;DP=48;FS=0.0;HRun=15;HaplotypeScore=373.6297;IndelType=I;MQ=54.87;MQ0=0;MQRankSum=0.261;QD=5.44;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    0/1:33,15:48:90.64:300,0,91
3    108103433    rs3860537    T    C    369.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:402,30,0
3    108107704    rs1463431    C    T    479.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,13:14:39.12:512,39,0
3    108107925    rs7616341    C    A    1507.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1541,114,0
3    108112760    rs2290601    C    T    726.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:759,60,0
3    108117356    .    T    TG    973.18    PASS    AC=2;AF=1.00;AN=2;DP=28;FS=0.0;HRun=1;HaplotypeScore=181.5542;IndelType=I;MQ=58.73;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,28:28:78.24:1015,78,0
3    108117694    rs13087507    G    A    3449.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3449,262,0
3    108126872    rs3957543    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    108129348    rs1078455    T    C    528.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:561,42,0
3    108135606    rs67919012    TAA    T    1132.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=11;HaplotypeScore=287.5827;IndelType=D;MQ=57.23;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1174,117,0
3    108135799    rs11927603    C    G    1284.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,40:40:96.31:1317,96,0
3    108140148    rs4593038    A    G    626.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:659,51,0
3    108147145    rs1817233    T    A    726.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:759,57,0
3    108147295    rs1350235    C    A    4870.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,148:148:99:4870,355,0
3    108147728    rs3900940    T    C    2910.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=35.07;SNPEFF_AMINO_ACID_CHANGE=T1125A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108147339_108147728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2944,217,0
3    108156633    rs113832514    A    AAAAG    1409.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=68.6675;IndelType=I;MQ=52.1;MQ0=0;QD=64.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:3,19:22:60.20:1451,60,0
3    108158574    rs3996040    C    T    4267.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.655;MQ=59.45;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,124:125:99:4267,310,0
3    108160339    rs7652606    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    108163303    rs3996017    C    T    79.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
3    108172817    rs6437783    C    T    950.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=35.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495753    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:984,75,0
3    108188755    rs11917965    A    C    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
3    108188993    rs9868484    G    A    1738.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8519;MQ=59.56;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=H504Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108188889_108189059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,52:53:99:1771,132,0
3    108189750    rs12495639    C    T    728.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=38.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:761,57,0
3    108195406    rs3996003    C    T    465.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-1.085;QD=27.38;ReadPosRankSum=1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:1,16:17:3.56:496,4,0
3    108211869    .    A    AAAGG    570.63    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=0;HaplotypeScore=34.7883;IndelType=I;MQ=56.0;MQ0=0;QD=47.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:2,10:11:27.09:613,27,0
3    108214537    rs2603140    T    G    201.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
3    108224685    rs55971936    CA    C    84.62    QDFilter2    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=49;FS=2.646;HRun=15;HaplotypeScore=295.8877;IndelType=D;MQ=55.98;MQ0=0;MQRankSum=2.126;QD=1.73;ReadPosRankSum=1.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    0/1:34,13:49:99:124,0,433
3    108229122    rs3843872    C    G    104.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=20.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:137,12,0
3    108229171    rs2249886    T    C    824.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:0,22:22:66.17:857,66,0
3    108229437    rs34809945    G    GA    1194.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=11;HaplotypeScore=136.1223;IndelType=I;MQ=60.01;MQ0=0;QD=23.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273353    GT:AD:DP:GQ:PL    1/1:7,42:50:99:1237,126,0
3    108271012    rs2305514    T    C    908.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1524;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295746    GT:AD:DP:GQ:PL    1/1:0,28:28:72.21:941,72,0
3    108272743    rs2688253    T    C    65.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.43;MQ0=0;QD=21.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1524;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295746    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:97,9,0
3    108273441    rs2045095    T    C    220.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1524;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295746    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:254,18,0
3    108281784    rs35938863    C    T    857.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1524;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295746    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:891,66,0
3    108286947    rs11386134    G    GA    1410.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=8;HaplotypeScore=84.4935;IndelType=I;MQ=60.75;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1524;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295746    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1453,126,0
3    108303989    rs34788499    C    A    672.66    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.487;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5767;MQ=59.38;MQ0=0;MQRankSum=0.904;QD=18.18;ReadPosRankSum=0.659;SNPEFF_AMINO_ACID_CHANGE=C58F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108303912_108304059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1524;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295746    GT:AD:DP:GQ:PL    0/1:16,21:37:99:703,0,527
3    108329888    rs3112026    A    G    247.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361582    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
3    108335253    rs71920270    A    AT    451.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DB;DP=22;FS=0.0;HRun=12;HaplotypeScore=120.7738;IndelType=I;MQ=57.81;MQ0=0;MQRankSum=-0.456;QD=20.53;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361582    GT:AD:DP:GQ:PL    1/1:4,18:22:35.19:494,35,0
3    108344636    rs11296688    TA    T    222.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=58.5836;IndelType=D;MQ=59.13;MQ0=0;QD=15.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361582    GT:AD:DP:GQ:PL    1/1:2,12:14:38.64:265,39,0
3    108355423    rs10711079    AT    A    1318.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=7;HaplotypeScore=114.6027;IndelType=D;MQ=60.54;MQ0=0;QD=28.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393969    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1361,135,0
3    108355575    rs10711080    CT    C    1145.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DB;DP=77;FS=0.0;HRun=12;HaplotypeScore=257.4741;IndelType=D;MQ=59.44;MQ0=0;MQRankSum=0.402;QD=14.87;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393969    GT:AD:DP:GQ:PL    1/1:15,58:77:68.22:1187,68,0
3    108356501    .    T    TTTAAGGTAGTA    1882.14    PASS    AC=2;AF=1.00;AN=2;DP=16;FS=0.0;HRun=0;HaplotypeScore=111.0473;IndelType=I;MQ=40.15;MQ0=0;QD=117.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393969    GT:AD:DP:GQ:PL    1/1:8,7:16:39.13:1924,39,0
3    108369823    rs116329058    G    A    120.50    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.1;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479138    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:150,0,25
3    108396183    rs67477027    A    AT    258.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.267;DB;DP=20;FS=0.0;HRun=15;HaplotypeScore=282.5584;IndelType=I;MQ=45.63;MQ0=0;MQRankSum=-0.522;QD=12.94;ReadPosRankSum=-1.863;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361582    GT:AD:DP:GQ:PL    1/1:6,8:20:14.42:301,14,0
3    108402894    rs66531435    CAT    C    311.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=26.5365;IndelType=D;MQ=57.05;MQ0=0;QD=38.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361582    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:353,24,0
3    108403086    rs9856097    T    C    5794.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.74;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=P969;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108403063_108403188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361582    GT:AD:DP:GQ:PL    1/1:0,176:176:99:5794,442,0
3    108475808    rs1107337    G    A    396.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RETNLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295755    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:429,33,0
3    108541931    rs5851618    CAT    C    334.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.914;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=65.8613;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=-0.53;QD=18.58;ReadPosRankSum=-0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295756    GT:AD:DP:GQ:PL    0/1:9,9:18:99:373,0,470
3    108541994    rs2121760    C    T    211.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295756    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
3    108557820    rs7651205    T    C    882.01    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=0.7;DB;DP=51;Dels=0.0;FS=1.171;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.979;QD=17.29;ReadPosRankSum=0.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295756    GT:AD:DP:GQ:PL    0/1:19,32:51:99:912,0,582
3    108565815    rs2593831    T    C    483.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295756    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:517,39,0
3    108567923    rs2715716    G    A    347.89    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.176;QD=16.57;ReadPosRankSum=0.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484927    GT:AD:DP:GQ:PL    0/1:10,11:21:99:378,0,343
3    108639119    rs2715688    A    G    212.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261047    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:246,21,0
3    108639423    rs2715687    C    T    1153.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_AMINO_ACID_CHANGE=V72I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108639283_108639432;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCA1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261047    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1186,87,0
3    108672335    rs35258530    GA    G    67.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=119.689;IndelType=D;MQ=54.55;MQ0=0;MQRankSum=0.694;QD=3.4;ReadPosRankSum=1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:10,7:20:99:107,0,174
3    108677821    rs2197737    C    A    1610.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.29;SNPEFF_AMINO_ACID_CHANGE=S961;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108677692_108677967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000483760    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1644,120,0
3    108678002    rs2197738    G    A    1689.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1723,135,0
3    108682218    rs2715755    A    G    1652.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1686,141,0
3    108690221    rs2593943    G    A    2980.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.48;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=H815Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108690177_108690249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000483760    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3013,229,0
3    108698090    rs2953337    A    G    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
3    108698224    rs62272098    T    C    253.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=12.08;ReadPosRankSum=-1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:12,9:21:99:284,0,433
3    108698627    rs2953338    G    A    425.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:459,36,0
3    108703422    rs1868195    A    G    144.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=28.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
3    108703518    rs2593958    G    T    876.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:910,69,0
3    108703548    rs2593959    C    T    1172.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=39.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,30:30:90.28:1205,90,0
3    108703702    rs2593960    A    T    407.52    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=0.401;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=31.35;ReadPosRankSum=1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:1,12:13:1.54:436,0,2
3    108705715    rs111860692    A    AT    620.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=9;HaplotypeScore=72.8362;IndelType=I;MQ=59.02;MQ0=0;QD=24.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:3,22:25:60.16:663,60,0
3    108719470    rs3762698    C    G    1042.69    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=86;Dels=0.0;FS=2.848;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-1.286;QD=12.12;ReadPosRankSum=0.464;SNPEFF_AMINO_ACID_CHANGE=L686;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108719404_108719505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000483760    GT:AD:DP:GQ:PL    0/1:48,38:86:99:1073,0,1573
3    108724202    rs13072610    A    G    338.38    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=16;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=21.15;ReadPosRankSum=2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:6,10:16:99:368,0,158
3    108724279    rs2290058    T    A    211.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:245,21,0
3    108725694    rs2044586    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    108725759    rs2044587    C    T    125.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
3    108725848    rs5851630    ATTGC    A    1585.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=259.0464;IndelType=D;MQ=49.07;MQ0=0;QD=54.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:2,27:29:84.29:1628,84,0
3    108725862    rs2044589    T    C    996.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.29;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,33:33:84.21:1030,84,0
3    108725984    rs2044590    G    C    883.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.45;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:917,75,0
3    108746411    rs71629378    A    ATT    484.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=14;HaplotypeScore=118.4055;IndelType=I;MQ=48.77;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:4,8:17:48.89:527,49,0
3    108746836    rs17665933    T    C    34.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:4,2:6:64.82:65,0,143
3    108746953    rs9858814    C    G    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
3    108754146    rs9821261    G    A    1155.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1189,87,0
3    108754214    rs3762697    T    C    674.26    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=51;Dels=0.0;FS=1.072;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=13.22;ReadPosRankSum=0.368;SNPEFF_AMINO_ACID_CHANGE=M478V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108754187_108754315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:27,24:51:99:704,0,796
3    108754238    rs4855576    A    T    1446.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=F470I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108754187_108754315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1480,114,0
3    108754260    rs3762696    A    G    1290.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=35.85;SNPEFF_AMINO_ACID_CHANGE=D462;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_108754187_108754315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1324,105,0
3    108754320    rs36119926    T    TA    415.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=10;HaplotypeScore=142.5127;IndelType=I;MQ=60.45;MQ0=0;QD=19.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:3,12:21:58.60:457,59,0
3    108754374    rs3762695    T    C    163.12    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.94;MQ0=0;MQRankSum=-0.387;QD=14.83;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:5,6:11:99:193,0,176
3    108773772    rs7653625    A    G    301    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.248;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8533;MQ=58.99;MQ0=0;MQRankSum=0.066;QD=13.09;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:11,11:23:99:331,0,341
3    108776343    rs1031252    C    T    1321.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1354,99,0
3    108776439    rs2290061    T    C    141.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=14.1;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,175
3    108780831    rs7653651    G    A    1632.80    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=5.15;DB;DP=94;Dels=0.0;FS=4.225;HRun=0;HaplotypeScore=1.4972;MQ=59.32;MQ0=0;MQRankSum=-0.567;QD=17.19;ReadPosRankSum=-0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:39,54:94:99:1663,0,995
3    108781952    rs13060344    G    T    499.72    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.673;DB;DP=34;Dels=0.0;FS=6.69;HRun=3;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.466;QD=14.7;ReadPosRankSum=-0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:16,18:34:99:530,0,524
3    108812154    rs9821382    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    108829765    rs6437822    C    T    37.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.47;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232603    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,93
3    108897541    rs9288889    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=C3orf66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494582    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    109019435    rs9865540    G    A    679.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478945    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:713,54,0
3    109027157    rs7611135    C    T    953.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478945    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:987,72,0
3    109027820    rs7611871    G    A    983.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478945    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1016,75,0
3    109049384    rs13059848    T    C    833.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.716;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=0.152;QD=14.37;ReadPosRankSum=-0.902;SNPEFF_AMINO_ACID_CHANGE=P222;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_109049371_109049659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335658    GT:AD:DP:GQ:PL    0/1:29,29:58:99:863,0,888
3    109049720    rs112463757    C    CTAAGGGT    1295.69    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.349;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=160.2377;IndelType=I;MQ=50.27;MQ0=0;MQRankSum=-3.097;QD=41.8;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477303    GT:AD:DP:GQ:PL    0/1:20,9:31:99:1335,0,1058
3    109050980    rs1163438    T    C    171.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489281    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:205,18,0
3    109052732    rs3762648    T    C    1261.45    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=91;Dels=0.0;FS=1.679;HRun=0;HaplotypeScore=1.367;MQ=59.75;MQ0=0;MQRankSum=-0.218;QD=13.86;ReadPosRankSum=-1.282;SNPEFF_AMINO_ACID_CHANGE=I3V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_109052717_109052840;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000477303    GT:AD:DP:GQ:PL    0/1:46,45:91:99:1291,0,1430
3    109052934    rs7642495    G    A    84.61    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=6.04;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335658    GT:AD:DP:GQ:PL    0/1:10,4:14:99:115,0,303
3    109056183    rs9836011    A    T    88.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=8.86;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335658    GT:AD:DP:GQ:PL    0/1:5,5:10:99:119,0,139
3    110401486    rs36104081    C    T    1769.79    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.754;DB;DP=101;Dels=0.0;FS=3.851;HRun=0;HaplotypeScore=0.8667;MQ=57.66;MQ0=0;MQRankSum=1.163;QD=17.52;ReadPosRankSum=-1.449;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-179A18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483479    GT:AD:DP:GQ:PL    0/1:42,59:101:99:1800,0,1309
3    110611137    rs1381838    G    A    2283.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=S180L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_110610970_110611450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-553A10.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383686    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2316,171,0
3    110612308    rs9826523    G    A    1453.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-553A10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485473    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1486,108,0
3    111286625    .    G    C    46.11    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=5.76;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283285    GT:AD:DP:GQ:PL    0/1:5,3:8:76.10:76,0,185
3    111316886    rs3215207    C    CTTATG    1608.93    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.691;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=163.6883;IndelType=I;MQ=55.8;MQ0=0;MQRankSum=-1.285;QD=40.22;ReadPosRankSum=-0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283285    GT:AD:DP:GQ:PL    0/1:23,15:40:99:1648,0,1110
3    111356083    rs1533270    G    C    911.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.4;SNPEFF_AMINO_ACID_CHANGE=P454;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111356043_111356108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD96;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352690    GT:AD:DP:GQ:PL    1/1:0,31:31:72.22:944,72,0
3    111432805    rs17423699    G    A    712.42    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=66;Dels=0.0;FS=0.955;HRun=0;HaplotypeScore=2.78;MQ=60.0;MQ0=0;MQRankSum=0.432;QD=10.79;ReadPosRankSum=0.486;SNPEFF_AMINO_ACID_CHANGE=A232;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111432734_111432975;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393934    GT:AD:DP:GQ:PL    0/1:36,30:66:99:742,0,1036
3    111451383    rs13085147    A    C    55.49    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=5.04;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393934    GT:AD:DP:GQ:PL    0/1:8,3:11:85.48:85,0,294
3    111451603    rs3821919    G    C    140.84    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-0.361;QD=15.65;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    0/1:4,5:9:99:171,0,137
3    111564913    rs139342193    A    G    241.68    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=12;Dels=0.0;FS=5.643;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-2.034;QD=20.14;ReadPosRankSum=-0.925;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    0/1:3,9:12:90.53:272,0,91
3    111564985    rs937558    T    A    160.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
3    111602770    rs6805339    G    A    391.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.391;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.604;QD=18.63;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    0/1:9,12:21:99:421,0,310
3    111602828    rs6805359    G    A    732.56    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.862;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.968;QD=15.26;ReadPosRankSum=-0.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    0/1:25,23:48:99:763,0,836
3    111604541    rs1283007    G    C    250.54    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=15.66;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    0/1:6,10:16:99:281,0,205
3    111631920    rs9819688    C    A    95.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=15.88;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    0/1:2,4:6:65.42:125,0,65
3    111637691    rs6786539    T    C    170.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477695    GT:AD:DP:GQ:PL    1/1:0,7:7:21.02:204,21,0
3    111637692    rs6773761    G    C    187.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477695    GT:AD:DP:GQ:PL    1/1:0,7:7:21.02:220,21,0
3    111637816    rs16858868    A    G    278.21    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.641;DB;DP=25;Dels=0.0;FS=3.128;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=11.13;ReadPosRankSum=-0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477695    GT:AD:DP:GQ:PL    0/1:14,11:25:99:308,0,491
3    111637904    rs2399399    G    A    2799.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477695    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2832,208,0
3    111638132    rs951660    A    C    455.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477695    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:488,36,0
3    111638199    rs1282941    A    G    199.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477695    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:232,18,0
3    111638952    rs6779756    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477695    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    111639353    rs937551    G    T    167.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477695    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
3    111658290    rs712509    T    G    524.91    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.36;MQ0=0;MQRankSum=-0.285;QD=14.58;ReadPosRankSum=0.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    0/1:17,19:36:99:555,0,538
3    111658486    rs712510    T    G    976.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=29.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    1/1:0,33:33:78.24:1010,78,0
3    111659377    rs698358    T    C    583.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:616,48,0
3    111663928    rs6786655    A    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359729    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    111671284    rs712517    A    G    420.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.9;MQ0=0;QD=35.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478733    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:453,36,0
3    111685328    rs774859    T    C    382.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393923    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:415,30,0
3    111685374    rs112667758    GGT    G    132.36    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.968;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=155.981;IndelType=D;MQ=56.45;MQ0=0;MQRankSum=-0.71;QD=6.62;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393923    GT:AD:DP:GQ:PL    0/1:14,6:20:99:171,0,340
3    111686738    rs799570    G    A    356.36    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=19.8;ReadPosRankSum=0.906;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470699    GT:AD:DP:GQ:PL    0/1:7,11:18:99:386,0,235
3    111692693    rs2895388    A    G    1062.46    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=0.141;DB;DP=83;Dels=0.0;FS=1.046;HRun=0;HaplotypeScore=3.2437;MQ=60.0;MQ0=0;MQRankSum=0.123;QD=12.8;ReadPosRankSum=-0.552;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498699    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1092,0,1490
3    111692829    rs774852    C    T    159.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498699    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:192,15,0
3    111697867    rs2289598    T    C    174.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=17.49;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393923    GT:AD:DP:GQ:PL    0/1:4,6:10:99:205,0,128
3    111705992    rs3804765    A    G    139.61    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=12.69;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABHD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497293    GT:AD:DP:GQ:PL    0/1:6,5:11:99:170,0,213
3    111710206    rs6795538    T    C    143.15    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.511;DB;DP=19;Dels=0.0;FS=5.18;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.857;QD=7.53;ReadPosRankSum=0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABHD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273359    GT:AD:DP:GQ:PL    0/1:10,9:19:99:173,0,320
3    111710398    rs17429033    A    G    1510.55    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.272;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8216;MQ=59.24;MQ0=0;MQRankSum=0.723;QD=13.49;ReadPosRankSum=-0.538;SNPEFF_AMINO_ACID_CHANGE=I251V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111710224_111712210;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABHD10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273359    GT:AD:DP:GQ:PL    0/1:57,55:112:99:1541,0,1639
3    111719493    rs774764    A    G    641.69    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.088;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.686;QD=17.34;ReadPosRankSum=0.411;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_111719370_111719539;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAGLN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000486460    GT:AD:DP:GQ:PL    0/1:17,20:37:99:672,0,537
3    111719879    rs2292582    C    T    435.83    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=60.0;MQ0=0;MQRankSum=0.643;QD=16.76;ReadPosRankSum=1.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAGLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273368    GT:AD:DP:GQ:PL    0/1:12,14:26:99:466,0,398
3    111730487    rs79557849    T    C    65.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.98;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAGLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273368    GT:AD:DP:GQ:PL    0/1:3,3:6:95.87:96,0,108
3    111730546    rs3749310    G    A    276.81    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.976;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.83;QD=16.28;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAGLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273368    GT:AD:DP:GQ:PL    0/1:7,10:17:99:307,0,197
3    111730591    rs3749311    G    T    598.80    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.706;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-2.246;QD=16.63;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAGLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273368    GT:AD:DP:GQ:PL    0/1:15,21:36:99:629,0,483
3    111730766    rs3828394    G    A    67.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.5;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAGLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273368    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:97,0,69
3    111760771    rs774774    A    G    1778.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_AMINO_ACID_CHANGE=K101;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111760767_111760897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452346    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1812,138,0
3    111763085    rs4682350    C    T    1990.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419127    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2024,147,0
3    111763278    rs7650559    G    T    328.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=25.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419127    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:361,30,0
3    111766559    rs1688304    T    G    1113.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419127    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1147,84,0
3    111769417    rs7625159    G    A    624.57    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=4.526;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8995;MQ=48.66;MQ0=0;MQRankSum=1.123;QD=7.44;ReadPosRankSum=0.845;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460599    GT:AD:DP:GQ:PL    0/1:45,38:84:99:655,0,688
3    111799845    rs340151    A    T    1049.27    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.766;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.68;MQ0=0;MQRankSum=-0.006;QD=14.78;ReadPosRankSum=-0.793;SNPEFF_AMINO_ACID_CHANGE=S690C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111799761_111800012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419127    GT:AD:DP:GQ:PL    0/1:36,35:71:99:1079,0,1152
3    111822017    rs41270437    A    G    36.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=6.06;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264848    GT:AD:DP:GQ:PL    0/1:4,2:6:66.35:66,0,135
3    111828384    rs138046470    G    GT    881.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=3;HaplotypeScore=140.5327;IndelType=I;MQ=59.69;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264848    GT:AD:DP:GQ:PL    1/1:3,22:25:66.22:924,66,0
3    111828423    rs340167    G    A    946.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=35.07;SNPEFF_AMINO_ACID_CHANGE=G144S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111828390_111828460;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264848    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:980,72,0
3    111828476    rs2120095    A    G    781.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.42;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264848    GT:AD:DP:GQ:PL    1/1:0,26:26:60.18:815,60,0
3    111849497    rs78709683    T    G    170.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.813;QD=10.67;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480282    GT:AD:DP:GQ:PL    0/1:10,6:16:99:201,0,329
3    111873902    rs11369523    T    TA    501.53    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=99;FS=8.1;HRun=14;HaplotypeScore=476.2942;IndelType=I;MQ=58.07;MQ0=0;MQRankSum=1.796;QD=5.07;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:61,32:99:99:541,0,434
3    111885896    rs4682084    A    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
3    111886357    rs4682363    A    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    111898387    rs74367861    A    G    829.47    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DB;DP=62;Dels=0.0;FS=1.007;HRun=1;HaplotypeScore=1.6281;MQ=59.63;MQ0=0;MQRankSum=1.963;QD=13.38;ReadPosRankSum=1.86;SNPEFF_AMINO_ACID_CHANGE=T922;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111898378_111898548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000487372    GT:AD:DP:GQ:PL    0/1:28,34:62:99:859,0,748
3    111904703    rs113370398    C    A    114.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.0;QD=19.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:2,4:6:20.20:144,0,20
3    111918051    rs79256733    T    C    373.71    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=2.615;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=18.69;ReadPosRankSum=-0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:7,13:20:99:404,0,233
3    111918216    rs13098660    A    G    1362.14    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.812;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.801;QD=14.49;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=F777;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111918168_111918316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000487372    GT:AD:DP:GQ:PL    0/1:42,52:94:99:1392,0,1351
3    111921225    rs6781844    G    T    934.06    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.018;DB;DP=94;Dels=0.0;FS=5.427;HRun=3;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.571;QD=9.94;ReadPosRankSum=-0.156;SNPEFF_AMINO_ACID_CHANGE=Q684K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111921097_111921246;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000487372    GT:AD:DP:GQ:PL    0/1:59,35:94:99:964,0,1687
3    111923047    rs4422273    G    A    446.36    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=4.24;DB;DP=45;Dels=0.0;FS=8.619;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-1.321;QD=9.92;ReadPosRankSum=1.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:26,19:45:99:476,0,751
3    111923123    rs4434123    G    A    923.32    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.77;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=59.71;MQ0=0;MQRankSum=-1.136;QD=11.54;ReadPosRankSum=-0.336;SNPEFF_AMINO_ACID_CHANGE=T657I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111923065_111923250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000487372    GT:AD:DP:GQ:PL    0/1:49,31:80:99:953,0,1522
3    111926909    rs1492491    G    A    367.96    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=16.0;ReadPosRankSum=1.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:11,12:23:99:398,0,374
3    111926950    rs17505536    G    A    598.17    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.09;MQ0=0;MQRankSum=-0.274;QD=11.73;ReadPosRankSum=0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:28,23:51:99:628,0,993
3    111936118    rs11921877    A    G    69.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.9;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,144
3    111936200    rs1388857    C    A    378.03    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.204;DB;DP=29;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.24;QD=13.04;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:14,15:29:99:408,0,494
3    111936207    rs6779306    T    A    349.69    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.874;DB;DP=37;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.623;QD=9.45;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:19,18:37:99:380,0,612
3    111936491    rs9288939    A    G    261.64    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=20;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=13.08;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:11,9:20:99:292,0,308
3    111936564    rs9288940    G    A    100.07    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.01;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:1,4:5:26.20:130,0,26
3    111950367    rs55735606    C    G    351.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:384,27,0
3    111958577    rs10511310    C    T    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
3    111983157    rs62276974    G    A    222.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=15;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=14.86;ReadPosRankSum=-1.237;SNPEFF_AMINO_ACID_CHANGE=L304;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_111983047_111983190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    0/1:6,9:15:99:253,0,217
3    111984970    rs4682098    T    C    685.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305815    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:718,54,0
3    111993716    rs6805112    G    A    1097.85    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.273;DB;DP=75;Dels=0.0;FS=3.237;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.419;QD=14.64;ReadPosRankSum=-1.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467397    GT:AD:DP:GQ:PL    0/1:37,38:75:99:1128,0,1146
3    111996726    rs6791182    A    G    737.27    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.01;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.688;QD=13.91;ReadPosRankSum=-0.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467397    GT:AD:DP:GQ:PL    0/1:29,24:53:99:767,0,833
3    112005691    rs79950192    C    G    61.77    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=5.15;ReadPosRankSum=-0.555;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_112005551_112005726;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000471295    GT:AD:DP:GQ:PL    0/1:9,3:12:91.77:92,0,327
3    112052103    rs2276772    G    T    83.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD200;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315711    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    112052173    rs9883527    T    C    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD200;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315711    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
3    112063850    rs2272022    C    A    2311.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.4;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=P46T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112063809_112064135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD200;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315711    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2345,184,0
3    112066141    rs13098589    C    T    73.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD200;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315711    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
3    112073133    rs34345145    T    C    1056.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=30.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD200;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498096    GT:AD:DP:GQ:PL    1/1:1,34:35:84.26:1090,84,0
3    112184927    rs2171513    A    G    1836.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383680    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1870,135,0
3    112185025    rs9288952    G    A    2329.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_AMINO_ACID_CHANGE=P219L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112184955_112185230;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383680    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2363,172,0
3    112188478    rs11267594    A    AGTACATAGAATATGTATATAC    2171.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=173.3377;IndelType=I;MQ=48.88;MQ0=0;QD=155.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496584    GT:AD:DP:GQ:PL    1/1:0,3:14:42.14:2214,42,0
3    112190137    rs2931761    G    T    1387.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=R157S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112190059_112190202;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334529    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1421,105,0
3    112243635    rs2933141    T    C    2935.36    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DB;DP=181;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.94;MQ0=0;MQRankSum=1.144;QD=16.22;ReadPosRankSum=1.386;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E100P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489105    GT:AD:DP:GQ:PL    0/1:82,99:181:99:2965,0,2545
3    112243924    rs6772077    C    T    1189.32    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=2.78;DB;DP=82;Dels=0.0;FS=3.098;HRun=0;HaplotypeScore=0.8667;MQ=57.06;MQ0=0;MQRankSum=0.273;QD=14.5;ReadPosRankSum=-0.158;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E100P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489105    GT:AD:DP:GQ:PL    0/1:35,47:82:99:1219,0,890
3    112253058    rs72243791    C    CA    1059.74    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.496;DB;DP=96;FS=6.04;HRun=10;HaplotypeScore=259.424;IndelType=I;MQ=57.95;MQ0=0;MQRankSum=0.079;QD=11.04;ReadPosRankSum=0.107;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_112251357_112253184;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000402314    GT:AD:DP:GQ:PL    0/1:49,44:96:99:1099,0,703
3    112253193    rs67364662    C    CA    406.28    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.867;DB;DP=93;FS=0.0;HRun=14;HaplotypeScore=530.5569;IndelType=I;MQ=55.1;MQ0=0;MQRankSum=-0.161;QD=4.32;ReadPosRankSum=-1.879;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467275    GT:AD:DP:GQ:PL    0/1:61,22:93:99:445,0,413
3    112255507    rs71317507    G    A    111.16    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.9947;MQ=58.33;MQ0=0;MQRankSum=-1.067;QD=7.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467275    GT:AD:DP:GQ:PL    0/1:9,5:14:99:141,0,260
3    112260571    rs3736269    G    A    196.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=59.22;MQ0=0;MQRankSum=0.521;QD=8.18;ReadPosRankSum=1.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465980    GT:AD:DP:GQ:PL    0/1:16,8:24:99:226,0,571
3    112262859    rs3736270    A    C    494.34    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.492;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.017;QD=13.73;ReadPosRankSum=-1.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283290    GT:AD:DP:GQ:PL    0/1:19,17:36:99:524,0,628
3    112262957    rs3736271    T    C    679    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.384;DB;DP=55;Dels=0.0;FS=2.391;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.099;QD=12.35;ReadPosRankSum=0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283290    GT:AD:DP:GQ:PL    0/1:28,27:55:99:709,0,897
3    112267269    rs7625366    T    C    140.99    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=11.75;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283290    GT:AD:DP:GQ:PL    0/1:7,5:12:99:171,0,243
3    112267345    rs68165045    TA    T    531.53    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=33;FS=3.081;HRun=3;HaplotypeScore=100.053;IndelType=D;MQ=60.33;MQ0=0;MQRankSum=-0.741;QD=16.11;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283290    GT:AD:DP:GQ:PL    0/1:14,19:33:99:571,0,509
3    112267523    rs9809247    G    A    354.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.202;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.588;QD=14.77;ReadPosRankSum=-1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283290    GT:AD:DP:GQ:PL    0/1:12,12:24:99:384,0,430
3    112269287    rs2705520    A    G    193.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283290    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:227,18,0
3    112280218    rs2279532    G    A    34.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.81;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283290    GT:AD:DP:GQ:PL    0/1:4,2:6:64.83:65,0,113
3    112289320    rs9869455    G    A    551.44    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=1.382;QD=16.71;ReadPosRankSum=1.861;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468642    GT:AD:DP:GQ:PL    0/1:13,20:33:99:581,0,328
3    112289372    rs9869579    G    A    976.93    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=2.69;DB;DP=52;Dels=0.0;FS=3.85;HRun=0;HaplotypeScore=1.9312;MQ=59.64;MQ0=0;MQRankSum=0.332;QD=18.79;ReadPosRankSum=-0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468642    GT:AD:DP:GQ:PL    0/1:23,29:52:99:1007,0,635
3    112289505    rs35692417    C    T    661.78    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=2.295;DB;DP=67;Dels=0.0;FS=3.41;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.809;QD=9.88;ReadPosRankSum=0.952;SNPEFF_AMINO_ACID_CHANGE=S116;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112289387_112289517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000484995    GT:AD:DP:GQ:PL    0/1:40,27:67:99:692,0,1135
3    112289576    rs11411476    A    ATT    186.53    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=26;FS=0.0;HRun=13;HaplotypeScore=94.9404;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=2.162;QD=7.17;ReadPosRankSum=1.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468642    GT:AD:DP:GQ:PL    0/1:18,7:26:99:226,0,328
3    112300191    rs34596334    T    C    342.82    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.889;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.411;QD=13.19;ReadPosRankSum=0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460615    GT:AD:DP:GQ:PL    0/1:15,11:26:99:373,0,439
3    112301458    rs5851844    C    CCTTAGTAAT    3211.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=143.6248;IndelType=I;MQ=35.72;MQ0=0;QD=128.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460615    GT:AD:DP:GQ:PL    1/1:9,13:25:72.25:3254,72,0
3    112338027    rs13084615    T    C    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206423    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,72
3    112356770    rs2279531    T    C    733    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=2.125;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.146;QD=20.36;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469554    GT:AD:DP:GQ:PL    0/1:14,22:36:99:763,0,441
3    112415652    rs10934180    G    C    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=27.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-572C15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477975    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
3    112538571    rs67122051    CT    C    582.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=10;HaplotypeScore=89.4669;IndelType=D;MQ=60.35;MQ0=0;QD=21.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398214    GT:AD:DP:GQ:PL    1/1:2,24:27:71.97:625,72,0
3    112546473    rs1997281    G    A    2483.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=49.72;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=I36;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112546214_112546531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448932    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2516,196,0
3    112642568    rs9865242    C    G    1127.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=E312Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112640056_112642646;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000471858    GT:AD:DP:GQ:PL    1/1:0,32:32:84.25:1160,84,0
3    112647613    rs1466872    T    C    549.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440122    GT:AD:DP:GQ:PL    1/1:0,18:18:51.10:583,51,0
3    112647832    rs9826308    A    C    1583.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=59.46;MQ0=0;QD=36.82;SNPEFF_AMINO_ACID_CHANGE=H155Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112647663_112647911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295863    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1616,117,0
3    112647988    rs9868053    C    T    1208.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295863    GT:AD:DP:GQ:PL    1/1:0,31:31:90.30:1241,90,0
3    112648222    rs2171509    T    C    1979.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.105;DB;DP=66;Dels=0.0;FS=3.078;HRun=1;HaplotypeScore=0.0;MQ=50.96;MQ0=0;MQRankSum=0.315;QD=29.99;ReadPosRankSum=0.682;SNPEFF_AMINO_ACID_CHANGE=K112R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112648037_112648354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308611    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2013,130,0
3    112666542    rs1392786    T    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295863    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    112666859    rs2133946    C    T    312.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD200R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295863    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:345,27,0
3    112709828    rs2272393    C    G    329.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295864    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:363,30,0
3    112718608    rs10155015    G    A    225.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314400    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:259,21,0
3    112719791    rs34779191    CA    C    39.87    QDFilter2    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.489;DB;DP=32;FS=0.0;HRun=16;HaplotypeScore=167.2921;IndelType=D;MQ=56.8;MQ0=0;MQRankSum=0.311;QD=1.25;ReadPosRankSum=1.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314400    GT:AD:DP:GQ:PL    0/1:22,9:32:78.90:79,0,197
3    112727184    rs2306857    A    T    1404.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=F221I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_112727018_112727277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393857    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1438,108,0
3    112727462    rs3872609    C    T    152.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460410    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:186,15,0
3    112729768    rs2293562    A    T    427.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460410    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:460,36,0
3    112732309    rs72226879    GT    G    463.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.311;DB;DP=51;FS=0.0;HRun=14;HaplotypeScore=269.3074;IndelType=D;MQ=57.1;MQ0=0;MQRankSum=0.449;QD=9.09;ReadPosRankSum=-0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314400    GT:AD:DP:GQ:PL    1/1:23,22:51:42.15:506,42,0
3    112738318    rs2293560    C    T    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    112738625    rs7633507    C    T    93.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    112744217    rs28764907    A    G    107.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.4;MQ0=1;QD=13.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-572M11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460707    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:140,12,0
3    112991196    rs3930154    C    G    715.57    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.393;DB;DP=53;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.558;QD=13.5;ReadPosRankSum=0.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471963    GT:AD:DP:GQ:PL    0/1:27,26:53:99:746,0,814
3    113010303    rs17321330    G    A    564.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=37.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273395    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:598,45,0
3    113010466    rs2291905    T    C    2208.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=S1835G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113005777_113010595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393845    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2242,172,0
3    113012797    rs810209    G    A    399.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000308346    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:433,33,0
3    113012974    rs775217    A    G    750.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465510    GT:AD:DP:GQ:PL    1/1:0,25:25:66.18:784,66,0
3    113015436    rs808949    G    C    614.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308346    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:647,48,0
3    113015553    rs808950    A    C    4843.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.86;MQ0=0;QD=30.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308346    GT:AD:DP:GQ:PL    1/1:0,159:159:99:4843,391,0
3    113022870    rs4682484    T    C    3306.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=H1657R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113022763_113022964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393845    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3307,262,0
3    113022996    rs2270782    G    A    1451.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308346    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1485,111,0
3    113027214    rs775231    A    C    262.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=23.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308346    GT:AD:DP:GQ:PL    1/1:0,11:11:24.06:295,24,0
3    113099461    rs10934228    C    G    93.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475568    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:126,9,0
3    113172110    rs13091945    T    C    135.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPICE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295872    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:168,15,0
3    113322006    rs17325765    T    G    273.63    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.113;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.576;QD=8.55;ReadPosRankSum=0.614;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468728    GT:AD:DP:GQ:PL    0/1:19,13:32:99:304,0,660
3    113322618    rs77823673    A    G    77.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.59;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468728    GT:AD:DP:GQ:PL    0/1:1,3:5:30.61:108,0,31
3    113373930    rs930818    A    G    1152.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=V2200A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113367232_113380272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA2018;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316407    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1185,90,0
3    113376110    rs67441078    TTGC    T    528.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.456;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=204.4221;IndelType=D;MQ=53.51;MQ0=0;MQRankSum=0.639;QD=15.11;ReadPosRankSum=0.456;SNPEFF_AMINO_ACID_CHANGE=QQ1472Q;SNPEFF_CODON_CHANGE=cagcaa/caa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_3_113367232_113380272;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA2018;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316407    GT:AD:DP:GQ:PL    1/1:16,14:35:48.13:571,48,0
3    113377361    rs9813630    A    G    1348.33    PASS    AB=0.352;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.028;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.35;MQ0=0;MQRankSum=-0.03;QD=18.99;ReadPosRankSum=-0.463;SNPEFF_AMINO_ACID_CHANGE=N1056;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113367232_113380272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA2018;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316407    GT:AD:DP:GQ:PL    0/1:25,46:71:99:1378,0,741
3    113379865    rs9866806    G    C    261.87    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.068;DB;DP=26;Dels=0.0;FS=3.831;HRun=1;HaplotypeScore=0.9469;MQ=58.2;MQ0=0;MQRankSum=0.63;QD=10.07;ReadPosRankSum=1.56;SNPEFF_AMINO_ACID_CHANGE=P222A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113367232_113380272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA2018;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316407    GT:AD:DP:GQ:PL    0/1:15,11:26:99:292,0,473
3    113380332    rs3796254    T    C    239.68    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.224;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6617;MQ=57.23;MQ0=0;MQRankSum=0.337;QD=14.1;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA2018;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316407    GT:AD:DP:GQ:PL    0/1:8,9:17:99:270,0,272
3    113442198    rs3732793    C    A    218.05    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=3.123;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=16.77;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467022    GT:AD:DP:GQ:PL    0/1:5,8:13:99:248,0,174
3    113464859    rs1048892    A    G    141.98    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=3.09;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=12.91;ReadPosRankSum=-1.246;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467022    GT:AD:DP:GQ:PL    0/1:4,7:11:99:172,0,133
3    113503354    rs2305546    A    G    290.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=18;Dels=0.0;FS=7.375;HRun=0;HaplotypeScore=0.5784;MQ=58.71;MQ0=0;MQRankSum=0.666;QD=16.13;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273398    GT:AD:DP:GQ:PL    0/1:8,10:18:99:320,0,280
3    113508499    rs11385012    T    TA    231.14    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.739;DB;DP=24;FS=0.0;HRun=11;HaplotypeScore=90.5882;IndelType=I;MQ=61.34;MQ0=0;MQRankSum=1.091;QD=9.63;ReadPosRankSum=-2.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475322    GT:AD:DP:GQ:PL    0/1:13,11:24:99:270,0,169
3    113522544    rs13321446    T    C    956.72    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.13;DB;DP=88;Dels=0.0;FS=2.608;HRun=2;HaplotypeScore=0.9832;MQ=59.48;MQ0=0;MQRankSum=1.14;QD=10.87;ReadPosRankSum=2.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273398    GT:AD:DP:GQ:PL    0/1:43,44:88:99:987,0,1496
3    113524114    rs191478929    A    G    85.05    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=6.08;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273398    GT:AD:DP:GQ:PL    0/1:10,4:14:99:115,0,332
3    113524266    .    G    C    163.32    FSFilter60    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DP=44;Dels=0.0;FS=62.183;HRun=1;HaplotypeScore=1.9648;MQ=50.34;MQ0=0;MQRankSum=-3.099;QD=3.71;ReadPosRankSum=-0.746;SNPEFF_AMINO_ACID_CHANGE=R269P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113524201_113524372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545842    GT:AD:DP:GQ:PL    0/1:29,15:44:99:193,0,1000
3    113557690    rs9990079    G    A    49.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479212    GT:AD:DP:GQ:PL    0/1:2,3:5:24.11:79,0,24
3    113594377    rs13079383    A    G    828.21    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=3.482;DB;DP=62;Dels=0.0;FS=5.239;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.968;QD=13.36;ReadPosRankSum=0.968;SNPEFF_AMINO_ACID_CHANGE=L102;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113594331_113594434;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358160    GT:AD:DP:GQ:PL    0/1:32,30:62:99:858,0,906
3    113594577    rs10662527    C    CAT    384.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=14.7907;IndelType=I;MQ=60.44;MQ0=0;QD=54.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358160    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:427,21,0
3    113595156    rs2712350    C    G    2132.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498183    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2166,163,0
3    113595269    rs13096064    A    G    170.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.839;QD=12.18;ReadPosRankSum=-0.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498183    GT:AD:DP:GQ:PL    0/1:8,6:14:99:200,0,266
3    113601761    rs62265406    T    A    236.25    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.329;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.223;QD=14.77;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358160    GT:AD:DP:GQ:PL    0/1:7,9:16:99:266,0,243
3    113619872    rs2632244    C    T    3202.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358160    GT:AD:DP:GQ:PL    1/1:0,91:92:99:3235,247,0
3    113655207    rs3765114    C    T    1225.20    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.348;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=11.67;ReadPosRankSum=-0.918;SNPEFF_AMINO_ACID_CHANGE=N246;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113655113_113655289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452134    GT:AD:DP:GQ:PL    0/1:56,49:105:99:1255,0,1694
3    113659308    rs2029228    G    C    284.41    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6517;MQ=58.63;MQ0=0;MQRankSum=1.246;QD=16.73;ReadPosRankSum=0.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462838    GT:AD:DP:GQ:PL    0/1:6,11:17:99:314,0,134
3    113664183    rs138608067    CAG    C    170.53    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=65.4052;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=7.75;ReadPosRankSum=1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRAMD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358160    GT:AD:DP:GQ:PL    0/1:16,6:22:99:210,0,853
3    113672409    rs7615622    A    G    165.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330212    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
3    113673125    rs11921691    A    G    2130.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=K241R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113672547_113673257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000498275    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2163,163,0
3    113675026    rs62265439    A    G    104.63    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=13.08;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491556    GT:AD:DP:GQ:PL    0/1:3,5:8:96.92:135,0,97
3    113676900    rs62265440    A    T    76.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491556    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:106,0,27
3    113679589    rs12629415    C    A    554.88    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.617;DB;DP=48;Dels=0.0;FS=8.268;HRun=0;HaplotypeScore=2.7831;MQ=59.61;MQ0=0;MQRankSum=1.286;QD=11.56;ReadPosRankSum=-1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295878    GT:AD:DP:GQ:PL    0/1:25,23:48:99:585,0,724
3    113679725    rs3732785    C    T    320.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295878    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
3    113720517    rs6784095    T    A    902.66    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.029;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.59;MQ0=0;MQRankSum=1.748;QD=8.76;ReadPosRankSum=1.064;SNPEFF_AMINO_ACID_CHANGE=E696D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113720442_113720543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1407;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295878    GT:AD:DP:GQ:PL    0/1:67,36:103:99:933,0,1953
3    113720624    rs6438178    C    T    941.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=39.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481358    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:975,72,0
3    113730108    rs324555    C    T    32.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.42;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295878    GT:AD:DP:GQ:PL    0/1:3,2:5:62.10:62,0,107
3    113784007    rs34428541    A    AT    186.01    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=0.247;DB;DP=30;FS=0.0;HRun=12;HaplotypeScore=134.5158;IndelType=I;MQ=57.85;MQ0=0;MQRankSum=-0.652;QD=6.2;ReadPosRankSum=-1.641;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QTRTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281273    GT:AD:DP:GQ:PL    0/1:19,10:30:99:225,0,307
3    113785149    rs3830297    ATATGT    A    314.29    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=22;FS=2.326;HRun=0;HaplotypeScore=112.0493;IndelType=D;MQ=56.6;MQ0=1;MQRankSum=-0.627;QD=13.66;ReadPosRankSum=-1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QTRTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281273    GT:AD:DP:GQ:PL    0/1:16,6:22:99:353,0,1533
3    113795834    rs7631864    G    A    308.53    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.293;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.062;QD=13.41;ReadPosRankSum=0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QTRTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482307    GT:AD:DP:GQ:PL    0/1:12,11:23:99:339,0,444
3    113795858    rs41271381    T    A    264.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.501;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=14.72;ReadPosRankSum=-0.706;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QTRTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482307    GT:AD:DP:GQ:PL    0/1:9,9:18:99:295,0,324
3    113858201    rs2134655    C    T    166.89    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=12.84;ReadPosRankSum=1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281274    GT:AD:DP:GQ:PL    0/1:7,6:13:99:197,0,249
3    113858350    rs2251177    C    T    3556.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.673;MQ=59.29;MQ0=0;QD=36.29;SNPEFF_AMINO_ACID_CHANGE=Q240;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113858347_113858543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281274    GT:AD:DP:GQ:PL    1/1:0,97:98:99:3556,274,0
3    113890310    rs16822416    G    A    78.80    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.7;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281274    GT:AD:DP:GQ:PL    0/1:1,3:4:22.31:109,0,22
3    113890789    rs3732783    T    C    83.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=8.31;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=A17;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113890570_113890874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281274    GT:AD:DP:GQ:PL    0/1:6,4:10:99:113,0,220
3    113890815    rs6280    C    T    94.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9469;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=13.5;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=G9S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113890570_113890874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281274    GT:AD:DP:GQ:PL    0/1:3,4:7:94.78:124,0,95
3    113955055    rs11346654    GA    G    749.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.629;DB;DP=52;FS=0.0;HRun=13;HaplotypeScore=203.0935;IndelType=D;MQ=58.18;MQ0=0;MQRankSum=-1.087;QD=14.41;ReadPosRankSum=-0.82;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308095    GT:AD:DP:GQ:PL    1/1:13,38:52:34.95:792,35,0
3    113955164    rs3732782    T    G    2253.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=D253A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113953487_113956425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000482457    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2287,169,0
3    113955187    rs3732781    A    C    936.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.26;DB;DP=58;Dels=0.0;FS=1.033;HRun=1;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=0.109;QD=16.15;ReadPosRankSum=0.124;SNPEFF_AMINO_ACID_CHANGE=Y245*;SNPEFF_CODON_CHANGE=taT/taG;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_3_113953487_113956425;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF80;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000482457    GT:AD:DP:GQ:PL    0/1:29,29:58:99:967,0,949
3    113955265    rs6438190    G    A    1780.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.54;MQ0=0;QD=35.6;SNPEFF_AMINO_ACID_CHANGE=C219;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113953487_113956425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000482457    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1813,138,0
3    113955320    rs6438191    C    T    1921.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=R201H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_113953487_113956425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000482457    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1955,153,0
3    113956021    rs6770874    G    A    280.75    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=16.51;ReadPosRankSum=-1.203;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_113954569_113956425;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308095    GT:AD:DP:GQ:PL    0/1:8,9:17:99:311,0,238
3    114026553    rs7639194    A    G    131.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIGIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383671    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:164,15,0
3    115382655    rs28399377    C    T    1296.89    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.736;DB;DP=73;Dels=0.0;FS=2.019;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.314;QD=17.77;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=H10;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_115382368_115382763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAP43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393780    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1327,0,923
3    115394705    rs982206    T    C    247.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAP43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305124    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
3    115401993    .    C    T    324.05    HaplotypeScoreFilter13    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.657;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=48.4263;MQ=49.87;MQ0=0;MQRankSum=0.235;QD=9.26;ReadPosRankSum=1.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAP43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305124    GT:AD:DP:GQ:PL    0/1:19,16:35:82.42:354,0,82
3    115401994    .    GCACA    G    337.85    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DP=34;FS=0.0;HRun=0;HaplotypeScore=334.3737;IndelType=D;MQ=49.54;MQ0=0;MQRankSum=1.983;QD=9.94;ReadPosRankSum=1.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAP43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305124    GT:AD:DP:GQ:PL    0/1:24,10:34:99:377,0,826
3    115561099    rs35893352    G    A    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.5;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333617    GT:AD:DP:GQ:PL    0/1:2,2:4:65.32:68,0,65
3    116746175    rs12629740    A    G    113.55    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.54;MQ0=0;MQRankSum=0.736;QD=18.92;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474851    GT:AD:DP:GQ:PL    0/1:1,5:6:23.72:144,0,24
3    116746261    rs17730203    C    T    300.87    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.1;MQ0=0;MQRankSum=-0.215;QD=9.71;ReadPosRankSum=-0.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474851    GT:AD:DP:GQ:PL    0/1:19,12:31:99:331,0,692
3    116746298    rs17662604    G    C    664.08    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DB;DP=59;Dels=0.0;FS=5.417;HRun=1;HaplotypeScore=1.9827;MQ=52.69;MQ0=0;MQRankSum=-1.551;QD=11.26;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474851    GT:AD:DP:GQ:PL    0/1:35,24:59:99:694,0,1065
3    116746374    rs35725689    C    T    939.43    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=92;Dels=0.0;FS=7.0;HRun=0;HaplotypeScore=2.8919;MQ=47.1;MQ0=1;MQRankSum=-6.349;QD=10.21;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474851    GT:AD:DP:GQ:PL    0/1:47,44:92:99:969,0,1431
3    116746457    rs74310650    GTTA    G    1065.52    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.644;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=288.2988;IndelType=D;MQ=49.93;MQ0=0;MQRankSum=-2.267;QD=27.32;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474851    GT:AD:DP:GQ:PL    0/1:4,25:39:99:1105,0,269
3    116746476    rs12185920    A    T    593.44    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=3.251;DB;DP=35;Dels=0.0;FS=2.604;HRun=4;HaplotypeScore=1.9198;MQ=53.8;MQ0=0;MQRankSum=-0.16;QD=16.96;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474851    GT:AD:DP:GQ:PL    0/1:11,24:35:99:623,0,351
3    116746566    rs77535291    CA    C    122.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=9;HaplotypeScore=28.3602;IndelType=D;MQ=49.3;MQ0=0;QD=13.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSAMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474851    GT:AD:DP:GQ:PL    1/1:2,7:8:18.01:165,18,0
3    118621500    rs34908332    C    T    408.76    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.588;DB;DP=47;Dels=0.0;FS=2.626;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.819;QD=8.7;ReadPosRankSum=0.888;SNPEFF_AMINO_ACID_CHANGE=S360N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_118621238_118621808;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000491903    GT:AD:DP:GQ:PL    0/1:30,17:47:99:439,0,1070
3    118624369    rs62275716    C    T    2558.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354673    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2592,190,0
3    118866376    rs56317615    C    T    2171.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7809;MQ=58.59;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=S447L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_118864997_118866434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295622    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2205,166,0
3    118866515    rs9864127    C    T    257.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295622    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:291,21,0
3    118870222    rs73185896    G    C    1789.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8332;MQ=59.53;MQ0=0;QD=36.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470341    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1822,141,0
3    118870356    rs4133080    T    G    131.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295622    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
3    118909159    rs9840317    A    G    3110.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=Q113R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_118909092_118909166;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264234    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3144,241,0
3    118909538    rs9878996    G    T    419.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-484M3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490594    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:452,33,0
3    118909962    rs3796356    T    C    4007.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.11;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-484M3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490594    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4007,331,0
3    118909987    rs3796357    C    T    3021.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9707;MQ=58.89;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-484M3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490594    GT:AD:DP:GQ:PL    1/1:1,83:84:99:3055,235,0
3    118912961    rs62263545    T    C    96.61    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.66;MQ0=0;MQRankSum=0.278;QD=8.78;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264234    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,221
3    118913261    rs77921698    T    TC    1038.09    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.542;DB;DP=57;FS=1.329;HRun=3;HaplotypeScore=161.821;IndelType=I;MQ=59.65;MQ0=0;MQRankSum=-0.165;QD=18.21;ReadPosRankSum=-0.949;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479520    GT:AD:DP:GQ:PL    0/1:26,31:57:99:1077,0,697
3    118913337    rs7628485    A    G    245.13    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=17.51;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479520    GT:AD:DP:GQ:PL    0/1:5,9:14:99:275,0,156
3    118922650    rs140073651    C    CA    115.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=10;FS=0.0;HRun=7;HaplotypeScore=58.3927;IndelType=I;MQ=58.77;MQ0=0;MQRankSum=0.876;QD=11.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264234    GT:AD:DP:GQ:PL    0/1:5,5:10:78.40:154,0,78
3    118922654    rs12186112    A    C    150.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.77;MQ0=0;MQRankSum=-1.453;QD=15.09;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264234    GT:AD:DP:GQ:PL    1/1:5,5:10:15.05:184,15,0
3    118931389    rs6784208    C    T    697.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460321    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:730,54,0
3    118931669    rs6784717    G    T    86.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460321    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
3    118935284    rs68075325    CACGCACAT    C    217.35    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=93.3298;IndelType=D;MQ=49.34;MQ0=0;MQRankSum=-0.572;QD=27.17;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359213    GT:AD:DP:GQ:PL    0/1:1,7:8:61.95:256,0,62
3    118948618    rs4422293    G    C    324.33    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=21;Dels=0.0;FS=3.139;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.28;QD=15.44;ReadPosRankSum=-0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459778    GT:AD:DP:GQ:PL    0/1:10,11:21:99:354,0,278
3    118948716    rs4422294    G    A    706.82    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.102;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.257;QD=13.34;ReadPosRankSum=0.34;SNPEFF_AMINO_ACID_CHANGE=C30;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_118948694_118948900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000471675    GT:AD:DP:GQ:PL    0/1:29,24:53:99:737,0,906
3    119013928    rs3732412    A    T    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.68;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264245    GT:AD:DP:GQ:PL    0/1:3,2:5:68.41:68,0,107
3    119101039    rs73187863    T    A    547.55    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=3.663;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.661;QD=17.66;ReadPosRankSum=0.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264245    GT:AD:DP:GQ:PL    0/1:13,18:31:99:578,0,403
3    119117934    rs78962354    G    A    68.96    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=8.62;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264245    GT:AD:DP:GQ:PL    0/1:5,3:8:98.95:99,0,142
3    119118104    rs4688001    A    G    951.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_AMINO_ACID_CHANGE=V355;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119118046_119118108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264245    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:985,72,0
3    119132554    rs4687855    A    G    141.47    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=-0.922;QD=20.21;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264245    GT:AD:DP:GQ:PL    0/1:2,5:7:62.92:171,0,63
3    119133183    rs3732413    G    A    1446.85    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=85;Dels=0.0;FS=0.877;HRun=0;HaplotypeScore=2.8075;MQ=59.46;MQ0=0;MQRankSum=-0.71;QD=17.02;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=G803S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119132703_119139561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264245    GT:AD:DP:GQ:PL    0/1:39,46:85:99:1477,0,1000
3    119171280    rs1919586    C    G    295.53    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=19;Dels=0.0;FS=10.386;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=15.55;ReadPosRankSum=-1.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM39A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482162    GT:AD:DP:GQ:PL    0/1:8,11:19:99:326,0,291
3    119188895    rs6438531    C    G    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGLUT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295588    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
3    119196437    rs6799315    G    A    53.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.96;ReadPosRankSum=-1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGLUT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460339    GT:AD:DP:GQ:PL    0/1:6,3:9:83.64:84,0,217
3    119198873    rs4688007    G    A    601.90    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.421;DB;DP=33;Dels=0.0;FS=4.21;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.187;QD=18.24;ReadPosRankSum=0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGLUT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460339    GT:AD:DP:GQ:PL    0/1:13,20:33:99:632,0,355
3    119199099    rs139662431    C    CT    89.17    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=28;FS=0.0;HRun=13;HaplotypeScore=131.0855;IndelType=I;MQ=57.38;MQ0=0;MQRankSum=-0.194;QD=3.18;ReadPosRankSum=-0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POGLUT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460339    GT:AD:DP:GQ:PL    0/1:16,9:28:81.08:128,0,81
3    119219833    rs2293371    C    G    34.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.8;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMMDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466984    GT:AD:DP:GQ:PL    0/1:4,2:6:64.82:65,0,151
3    119235977    rs4447803    C    A    393.69    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.224;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.11;MQ0=0;MQRankSum=-0.245;QD=15.14;ReadPosRankSum=1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMMDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469324    GT:AD:DP:GQ:PL    0/1:12,14:26:99:424,0,425
3    119236017    rs4461452    G    T    629.49    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=5.733;DB;DP=48;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.832;MQ=59.52;MQ0=0;MQRankSum=1.26;QD=13.11;ReadPosRankSum=-0.942;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMMDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469324    GT:AD:DP:GQ:PL    0/1:24,23:48:99:659,0,634
3    119246477    rs77922702    T    C    66.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.01;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383668    GT:AD:DP:GQ:PL    0/1:3,3:6:96.03:96,0,106
3    119263770    rs9282638    T    C    133.37    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=19.05;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264246    GT:AD:DP:GQ:PL    0/1:1,6:7:23.18:163,0,23
3    119367390    rs2688643    T    C    1456.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=S242;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119367107_119367515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POPDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264231    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1489,120,0
3    119367706    rs1985121    G    T    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POPDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264231    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
3    119373257    rs2688631    A    G    345.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490145    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:378,30,0
3    119373273    rs111798425    G    A    201.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.365;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.33;MQ0=0;MQRankSum=0.471;QD=14.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490145    GT:AD:DP:GQ:PL    0/1:6,8:14:99:231,0,186
3    119373301    rs2688630    G    A    814.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490145    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:847,63,0
3    119373315    rs2688629    T    C    963.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=32.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490145    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:997,75,0
3    119426307    rs9848716    T    C    2998.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=59.74;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=Y86;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119426251_119426408;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273390    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3031,223,0
3    119427673    rs9834908    G    A    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488533    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
3    119434527    rs6438544    G    C    2501.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=A207P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119434409_119434590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273390    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2535,190,0
3    119444814    rs7649166    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273390    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
3    119501780    rs2472668    G    A    351.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337940    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:385,30,0
3    119501798    rs2461831    T    A    326.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337940    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
3    119526349    rs1464603    G    A    341.62    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.739;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.575;QD=13.66;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337940    GT:AD:DP:GQ:PL    0/1:14,11:25:99:372,0,469
3    119526372    rs1464602    G    A    184.66    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=10.26;ReadPosRankSum=-1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337940    GT:AD:DP:GQ:PL    0/1:10,8:18:99:215,0,356
3    119533733    rs6785049    G    A    111.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=15.88;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474090    GT:AD:DP:GQ:PL    0/1:3,4:7:55.77:141,0,56
3    119533773    rs6797879    T    C    134.84    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.059;QD=8.43;ReadPosRankSum=1.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474090    GT:AD:DP:GQ:PL    0/1:9,7:16:99:165,0,312
3    119533910    rs4058490    T    C    1356.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_AMINO_ACID_CHANGE=N256;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119533826_119533968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1I2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000466380    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1390,105,0
3    119631814    rs6438552    A    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264235    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:72,0,67
3    119666266    rs13312998    C    T    338.10    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.317;QD=16.1;ReadPosRankSum=1.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264235    GT:AD:DP:GQ:PL    0/1:10,11:21:99:368,0,346
3    119886548    rs9858566    G    C    832.26    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=3.349;DB;DP=47;Dels=0.0;FS=2.595;HRun=2;HaplotypeScore=0.9894;MQ=58.01;MQ0=0;MQRankSum=-1.316;QD=17.71;ReadPosRankSum=2.75;SNPEFF_AMINO_ACID_CHANGE=L588;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119885805_119887231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000461057    GT:AD:DP:GQ:PL    0/1:21,26:47:99:862,0,604
3    119886776    rs902790    T    A    1554.85    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.383;DB;DP=113;Dels=0.0;FS=6.101;HRun=0;HaplotypeScore=5.1355;MQ=58.14;MQ0=0;MQRankSum=0.909;QD=13.76;ReadPosRankSum=-1.132;SNPEFF_AMINO_ACID_CHANGE=E512D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119885805_119887231;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461057    GT:AD:DP:GQ:PL    0/1:52,61:113:99:1585,0,1580
3    119900212    rs1488765    G    C    327.80    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.208;DB;DP=27;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.558;QD=12.14;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315843    GT:AD:DP:GQ:PL    0/1:14,13:27:99:358,0,453
3    119900260    rs1488764    T    C    140.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=7.83;ReadPosRankSum=-1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315843    GT:AD:DP:GQ:PL    0/1:12,6:18:99:171,0,409
3    119904125    rs902791    A    G    351.86    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.136;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.162;QD=9.77;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315843    GT:AD:DP:GQ:PL    0/1:20,16:36:99:382,0,591
3    119904315    rs902792    G    C    139.64    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.69;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315843    GT:AD:DP:GQ:PL    0/1:6,5:11:99:170,0,210
3    119905619    rs74395262    G    A    1075.12    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.744;DB;DP=73;Dels=0.0;FS=2.305;HRun=0;HaplotypeScore=1.9532;MQ=59.37;MQ0=0;MQRankSum=-0.558;QD=14.73;ReadPosRankSum=-1.352;SNPEFF_AMINO_ACID_CHANGE=D162;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_119905505_119905630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315843    GT:AD:DP:GQ:PL    0/1:38,35:73:99:1105,0,1183
3    119905641    rs2319542    G    A    763.59    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=59;Dels=0.0;FS=1.299;HRun=1;HaplotypeScore=0.8941;MQ=59.22;MQ0=0;MQRankSum=0.44;QD=12.94;ReadPosRankSum=1.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315843    GT:AD:DP:GQ:PL    0/1:33,26:59:99:794,0,1060
3    119912297    rs902793    C    A    291.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=28;Dels=0.0;FS=1.72;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.091;QD=10.43;ReadPosRankSum=-1.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315843    GT:AD:DP:GQ:PL    0/1:16,12:28:99:322,0,529
3    120123953    rs1147701    T    A    251.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=35.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464690    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
3    120169641    rs1147708    T    C    88.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=14.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295633    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:120,9,0
3    120360331    rs804971    T    C    825.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283871    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:858,63,0
3    120369575    rs3817627    T    G    1545.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485313    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1579,117,0
3    120371414    rs2551607    G    A    406.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488183    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:439,33,0
3    120389243    rs1800722    T    C    882.44    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.219;DB;DP=51;Dels=0.0;FS=1.438;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.941;QD=17.3;ReadPosRankSum=0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480862    GT:AD:DP:GQ:PL    0/1:22,29:51:99:912,0,659
3    120389316    rs2255543    T    A    1216.61    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.767;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;MQRankSum=-1.188;QD=15.02;ReadPosRankSum=0.669;SNPEFF_AMINO_ACID_CHANGE=Q39H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_120389274_120389379;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000476082    GT:AD:DP:GQ:PL    0/1:41,40:81:99:1247,0,1202
3    120413158    rs7612975    G    A    1827.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273375    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1861,138,0
3    120428621    rs11720353    T    C    896.56    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.259;DB;DP=59;Dels=0.0;FS=5.486;HRun=0;HaplotypeScore=0.734;MQ=59.61;MQ0=0;MQRankSum=2.077;QD=15.2;ReadPosRankSum=1.605;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273375    GT:AD:DP:GQ:PL    0/1:27,32:59:99:927,0,787
3    120489926    rs2877413    G    T    258.84    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=19.91;ReadPosRankSum=-1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283875    GT:AD:DP:GQ:PL    0/1:4,9:13:99:289,0,132
3    120500446    rs2229308    T    A    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.25;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469772    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,109
3    120628840    rs470647    T    C    582.62    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.352;DB;DP=40;Dels=0.0;FS=1.925;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.748;QD=14.57;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273666    GT:AD:DP:GQ:PL    0/1:18,22:40:99:613,0,538
3    120673980    rs73185491    T    G    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273666    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
3    120760495    rs1688679    T    G    297.20    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.228;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=14.86;ReadPosRankSum=0.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273666    GT:AD:DP:GQ:PL    0/1:9,11:20:99:327,0,311
3    120976051    rs17249244    C    G    990.49    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=76;Dels=0.0;FS=4.66;HRun=0;HaplotypeScore=1.2434;MQ=59.75;MQ0=0;MQRankSum=-0.719;QD=13.03;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=T568S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_120976008_120976180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273666    GT:AD:DP:GQ:PL    0/1:41,35:76:99:1020,0,1377
3    121100116    rs66560810    GT    G    629.65    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=5.015;DB;DP=62;FS=0.0;HRun=9;HaplotypeScore=171.3034;IndelType=D;MQ=60.87;MQ0=0;MQRankSum=-0.518;QD=10.16;ReadPosRankSum=-0.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273666    GT:AD:DP:GQ:PL    0/1:32,30:62:99:669,0,824
3    121100414    rs17740072    A    G    588.20    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.41;DB;DP=50;Dels=0.0;FS=2.837;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=11.76;ReadPosRankSum=0.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273666    GT:AD:DP:GQ:PL    0/1:28,22:50:99:618,0,800
3    121132268    rs9849118    T    A    57.02    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=5.7;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273666    GT:AD:DP:GQ:PL    0/1:7,3:10:87.02:87,0,268
3    121137976    rs6782025    C    T    579.06    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.075;DB;DP=54;Dels=0.0;FS=1.289;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-1.055;QD=10.72;ReadPosRankSum=0.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471262    GT:AD:DP:GQ:PL    0/1:30,24:54:99:609,0,956
3    121138015    rs6782033    C    T    411.80    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.2;MQ0=0;MQRankSum=-0.504;QD=14.2;ReadPosRankSum=-0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471262    GT:AD:DP:GQ:PL    0/1:16,13:29:99:442,0,545
3    121154974    rs1381057    T    C    1216.36    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.75;DB;DP=87;Dels=0.0;FS=0.811;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.143;QD=13.98;ReadPosRankSum=0.794;SNPEFF_AMINO_ACID_CHANGE=Q2136R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121154969_121155122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543272    GT:AD:DP:GQ:PL    0/1:37,50:87:99:1246,0,1154
3    121155198    rs2030531    C    T    277.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=15.41;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474243    GT:AD:DP:GQ:PL    0/1:8,10:18:99:307,0,277
3    121159102    rs6769377    G    A    35.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=5.93;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:3,3:6:65.60:66,0,110
3    121186543    rs1381058    A    G    375.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.887;QD=18.79;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:8,12:20:99:406,0,197
3    121195302    rs72158357    TACAC    T    213.07    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=132.5925;IndelType=D;MQ=59.89;MQ0=0;MQRankSum=1.585;QD=8.52;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:15,9:25:99:252,0,753
3    121202131    rs56354556    CTT    C    267.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=23.2268;IndelType=D;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:309,21,0
3    121202433    rs78578025    TA    T    55.05    QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=34;FS=1.971;HRun=17;HaplotypeScore=186.3003;IndelType=D;MQ=54.04;MQ0=0;MQRankSum=-1.444;QD=1.62;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:22,11:34:94.08:94,0,185
3    121208833    rs3218649    G    C    707.45    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.396;DB;DP=65;Dels=0.0;FS=2.202;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=10.88;ReadPosRankSum=0.061;SNPEFF_AMINO_ACID_CHANGE=T1118R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121206149_121209255;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393672    GT:AD:DP:GQ:PL    0/1:40,25:65:99:737,0,1324
3    121212277    rs11351457    AT    A    192.18    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.245;DB;DP=28;FS=0.0;HRun=10;HaplotypeScore=68.1537;IndelType=D;MQ=60.39;MQ0=0;MQRankSum=-0.317;QD=6.86;ReadPosRankSum=-0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:16,12:28:99:231,0,406
3    121228833    rs3732406    A    C    301.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.249;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.08;QD=10.03;ReadPosRankSum=-1.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:18,12:30:99:331,0,634
3    121238749    rs702018    G    A    5763.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8225;MQ=58.81;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=G102;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121238718_121238930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543272    GT:AD:DP:GQ:PL    1/1:0,166:168:99:5764,433,0
3    121239027    rs702019    G    A    211.55    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.278;QD=19.23;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488282    GT:AD:DP:GQ:PL    0/1:4,7:11:99:242,0,129
3    121241058    rs13059229    C    G    730.09    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=42;Dels=0.0;FS=11.569;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;MQRankSum=-0.635;QD=17.38;ReadPosRankSum=-0.816;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:16,26:42:99:760,0,494
3    121263720    rs702017    C    A    2024.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3548;MQ=59.6;MQ0=0;QD=34.91;SNPEFF_AMINO_ACID_CHANGE=R201I;SNPEFF_CODON_CHANGE=aGa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121263574_121263753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393672    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2058,150,0
3    121265043    rs13065220    C    T    284.61    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=14.98;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393672    GT:AD:DP:GQ:PL    0/1:8,11:19:99:315,0,280
3    121265176    rs3806614    G    A    1547.70    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=128;Dels=0.0;FS=0.825;HRun=2;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.126;QD=12.09;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393672    GT:AD:DP:GQ:PL    0/1:71,57:128:99:1578,0,2128
3    121265522    rs11714774    A    C    897.38    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.701;DB;DP=68;Dels=0.0;FS=2.507;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.276;QD=13.2;ReadPosRankSum=-0.725;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:33,35:68:99:927,0,1036
3    121265599    rs72251695    TA    T    33.46    QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=32;FS=0.0;HRun=14;HaplotypeScore=210.6565;IndelType=D;MQ=57.05;MQ0=0;MQRankSum=0.508;QD=1.05;ReadPosRankSum=-0.381;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264233    GT:AD:DP:GQ:PL    0/1:20,9:32:72.49:72,0,347
3    121304710    rs486813    C    T    176    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARGFX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334384    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
3    121339354    rs7640859    T    C    1759.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338040    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1793,141,0
3    121339520    rs35295338    A    C    562    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.132;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-1.184;QD=14.79;ReadPosRankSum=0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338040    GT:AD:DP:GQ:PL    0/1:20,18:38:99:592,0,682
3    121340536    rs4676684    T    C    405.25    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=57;Dels=0.0;FS=6.369;HRun=0;HaplotypeScore=0.734;MQ=52.24;MQ0=0;MQRankSum=1.524;QD=7.11;ReadPosRankSum=-1.971;SNPEFF_AMINO_ACID_CHANGE=V87A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121340280_121342190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338040    GT:AD:DP:GQ:PL    0/1:27,29:57:99:435,0,545
3    121340557    .    G    T    715.15    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.516;DP=55;Dels=0.0;FS=6.317;HRun=1;HaplotypeScore=0.9332;MQ=55.21;MQ0=0;MQRankSum=1.437;QD=13.0;ReadPosRankSum=0.387;SNPEFF_AMINO_ACID_CHANGE=C94F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121340280_121342190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338040    GT:AD:DP:GQ:PL    0/1:25,29:55:99:745,0,591
3    121345874    rs2840143    G    C    31.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314583    GT:AD:DP:GQ:PL    0/1:1,2:3:33.21:61,0,33
3    121350573    rs1128163    A    G    188.17    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.791;QD=14.47;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338040    GT:AD:DP:GQ:PL    0/1:6,7:13:99:218,0,192
3    121350583    rs1128159    C    T    244.40    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=16.29;ReadPosRankSum=-0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338040    GT:AD:DP:GQ:PL    0/1:7,8:15:99:274,0,245
3    121350966    rs9869984    C    G    2575.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=V399L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121350948_121351031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCLS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428394    GT:AD:DP:GQ:PL    1/1:0,75:76:99:2608,196,0
3    121351480    rs9815500    T    C    304.29    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=27;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9832;MQ=57.39;MQ0=0;MQRankSum=-0.667;QD=11.27;ReadPosRankSum=-1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338040    GT:AD:DP:GQ:PL    0/1:14,13:27:99:334,0,345
3    121353254    rs2070179    T    C    388.42    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.767;DB;DP=38;Dels=0.0;FS=5.403;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.673;QD=10.22;ReadPosRankSum=1.206;SNPEFF_AMINO_ACID_CHANGE=T198A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121353054_121353265;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCLS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428394    GT:AD:DP:GQ:PL    0/1:23,15:38:99:418,0,672
3    121354381    rs7620842    A    T    116.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.53;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464274    GT:AD:DP:GQ:PL    0/1:4,4:8:99:146,0,130
3    121354583    rs3772126    G    A    826.82    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=2.028;DB;DP=67;Dels=0.0;FS=0.95;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=12.34;ReadPosRankSum=-0.769;SNPEFF_AMINO_ACID_CHANGE=A193;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121354582_121354651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCLS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428394    GT:AD:DP:GQ:PL    0/1:39,28:67:99:857,0,1150
3    121355102    rs6802033    C    A    129.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464274    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
3    121355492    rs56404875    A    G    195.38    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=17.76;ReadPosRankSum=-1.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464274    GT:AD:DP:GQ:PL    0/1:2,9:11:55.38:225,0,55
3    121383297    rs7153    G    A    329.94    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.171;DB;DP=29;Dels=0.0;FS=5.238;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.11;QD=11.38;ReadPosRankSum=-0.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491690    GT:AD:DP:GQ:PL    0/1:16,13:29:99:360,0,539
3    121400725    rs1463736    G    A    412.70    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=26;Dels=0.0;FS=1.799;HRun=0;HaplotypeScore=1.577;MQ=59.11;MQ0=0;MQRankSum=0.301;QD=15.87;ReadPosRankSum=1.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340645    GT:AD:DP:GQ:PL    0/1:11,14:26:99:443,0,385
3    121414061    rs1127412    C    T    1987.75    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=136;Dels=0.0;FS=3.141;HRun=0;HaplotypeScore=2.5149;MQ=59.66;MQ0=0;MQRankSum=-0.61;QD=14.62;ReadPosRankSum=-0.125;SNPEFF_AMINO_ACID_CHANGE=G1765D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121412588_121417776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340645    GT:AD:DP:GQ:PL    0/1:71,65:136:99:2018,0,2099
3    121415720    rs3732410    T    C    2313.67    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=3.186;DB;DP=144;Dels=0.0;FS=4.037;HRun=0;HaplotypeScore=1.399;MQ=59.42;MQ0=0;MQRankSum=0.753;QD=16.07;ReadPosRankSum=-0.929;SNPEFF_AMINO_ACID_CHANGE=Y1176C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121414325_121417776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000494517    GT:AD:DP:GQ:PL    0/1:61,83:144:99:2344,0,1792
3    121416623    rs3732407    G    C    2125.17    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=1.463;DB;DP=124;Dels=0.0;FS=8.535;HRun=0;HaplotypeScore=0.734;MQ=59.44;MQ0=0;MQRankSum=1.898;QD=17.14;ReadPosRankSum=1.783;SNPEFF_AMINO_ACID_CHANGE=T723S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121415847_121417776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426235    GT:AD:DP:GQ:PL    0/1:53,71:124:99:2155,0,1593
3    121433926    rs9854052    T    A    291.46    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.248;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.07;MQ0=0;MQRankSum=0.582;QD=11.66;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340645    GT:AD:DP:GQ:PL    0/1:15,10:25:99:321,0,494
3    121435621    rs9832267    T    C    880.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=91;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=1.339;QD=9.68;ReadPosRankSum=-1.083;SNPEFF_AMINO_ACID_CHANGE=Q224;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121435584_121435986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426235    GT:AD:DP:GQ:PL    0/1:52,39:91:99:911,0,1600
3    121435624    rs9812411    C    T    922.34    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.173;DB;DP=89;Dels=0.0;FS=1.785;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-0.829;QD=10.36;ReadPosRankSum=-1.183;SNPEFF_AMINO_ACID_CHANGE=E223;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121435584_121435986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426235    GT:AD:DP:GQ:PL    0/1:51,38:89:99:952,0,1538
3    121488995    rs1135750    C    G    34.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310864    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
3    121489439    rs148949254    TA    T    2926.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;FS=0.0;HRun=4;HaplotypeScore=222.4511;IndelType=D;MQ=59.98;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310864    GT:AD:DP:GQ:PL    1/1:3,80:83:99:2968,241,0
3    121500479    rs149985093    TACACACACACACAC    T    1279.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=186.2404;IndelType=D;MQ=35.14;MQ0=0;QD=91.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310864    GT:AD:DP:GQ:PL    1/1:3,11:14:33.11:1322,33,0
3    121500699    rs17849995    C    T    1852.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=C301Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121500590_121500721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349820    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1886,144,0
3    121507415    rs4073474    C    T    632.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310864    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:666,48,0
3    121508830    rs6802815    A    T    630.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.963;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.22;QD=23.36;ReadPosRankSum=-0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310864    GT:AD:DP:GQ:PL    1/1:1,26:27:29.85:664,30,0
3    121514458    rs79707726    TA    T    668.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DB;DP=44;FS=0.0;HRun=14;HaplotypeScore=160.9833;IndelType=D;MQ=60.59;MQ0=0;MQRankSum=0.702;QD=15.2;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498104    GT:AD:DP:GQ:PL    1/1:7,37:44:82.24:711,82,0
3    121526099    rs4582090    A    G    876.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=58.13;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310864    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:909,69,0
3    121526204    rs4543051    G    A    2536.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=57.77;MQ0=0;QD=30.19;SNPEFF_AMINO_ACID_CHANGE=L192;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121526191_121526290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310864    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2569,190,0
3    121573850    rs7637495    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273668    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    121613205    rs4603998    G    C    547.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295605    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:580,42,0
3    121643757    .    A    G    1139.66    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=3.415;DP=69;Dels=0.0;FS=1.718;HRun=0;HaplotypeScore=3.9473;MQ=60.0;MQ0=0;MQRankSum=-1.554;QD=16.52;ReadPosRankSum=-0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489886    GT:AD:DP:GQ:PL    0/1:34,35:69:99:1170,0,1129
3    121712051    rs2877561    A    C    325.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.01;SNPEFF_AMINO_ACID_CHANGE=L426;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121711997_121712817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILDR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393631    GT:AD:DP:GQ:PL    1/1:0,13:13:27.09:358,27,0
3    121712805    rs3915061    G    C    398.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.45;SNPEFF_AMINO_ACID_CHANGE=P147R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121712627_121712817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILDR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383663    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:431,36,0
3    121712980    rs3915060    C    T    928.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=57.4;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273691    GT:AD:DP:GQ:PL    1/1:0,31:31:72.23:961,72,0
3    121720494    rs62269207    C    T    3034.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9899;MQ=55.16;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273691    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3067,238,0
3    121725703    rs11924058    A    G    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273691    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
3    121810427    rs63114861    CT    C    2829.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;FS=0.0;HRun=9;HaplotypeScore=295.4329;IndelType=D;MQ=60.76;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264468    GT:AD:DP:GQ:PL    1/1:5,107:112:99:2871,315,0
3    121810709    rs114959849    C    T    132.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.5;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264468    GT:AD:DP:GQ:PL    0/1:3,5:8:99:162,0,99
3    121825197    rs2681417    G    A    2875.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=V103I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_121825045_121825347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD86;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000469710    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2908,226,0
3    121836966    rs10580127    TGA    T    557.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=57.3126;IndelType=D;MQ=58.83;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264468    GT:AD:DP:GQ:PL    1/1:1,15:16:45.15:599,45,0
3    121976253    rs9869985    G    A    712.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296154    GT:AD:DP:GQ:PL    1/1:0,24:24:60.16:745,60,0
3    121980242    rs3749207    T    C    338.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.14;QD=18.8;ReadPosRankSum=0.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490186    GT:AD:DP:GQ:PL    0/1:6,12:18:99:368,0,182
3    121980284    rs3749208    C    T    689    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.308;DB;DP=39;Dels=0.0;FS=3.052;HRun=1;HaplotypeScore=1.9707;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=17.67;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490186    GT:AD:DP:GQ:PL    0/1:17,22:39:99:719,0,580
3    122000726    rs10533065    CAT    C    385.86    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=4.256;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=86.1288;IndelType=D;MQ=59.75;MQ0=0;MQRankSum=-1.038;QD=14.84;ReadPosRankSum=-1.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296154    GT:AD:DP:GQ:PL    0/1:15,11:26:99:425,0,816
3    122000871    rs4678174    C    T    1452.63    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=75;Dels=0.0;FS=13.471;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-1.494;QD=19.37;ReadPosRankSum=1.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296154    GT:AD:DP:GQ:PL    0/1:29,46:75:99:1483,0,800
3    122001246    rs2270917    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296154    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    122003045    rs2036400    G    C    956.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=28.98;SNPEFF_AMINO_ACID_CHANGE=P748;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122002534_122004134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296154    GT:AD:DP:GQ:PL    1/1:0,33:33:78.24:989,78,0
3    122003757    rs1801725    G    T    355.39    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.052;DB;DP=36;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=1.6918;MQ=58.58;MQ0=0;MQRankSum=-1.225;QD=9.87;ReadPosRankSum=-2.156;SNPEFF_AMINO_ACID_CHANGE=A986S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122002534_122004134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296154    GT:AD:DP:GQ:PL    0/1:19,17:36:99:385,0,550
3    122003832    rs1801726    G    C    1134.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3656;MQ=58.71;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=E1011Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122002534_122004134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296154    GT:AD:DP:GQ:PL    1/1:0,36:36:90.28:1168,90,0
3    122004098    rs4677948    A    T    509.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296154    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:542,39,0
3    122056432    rs17589    C    T    1469.15    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=2.35;DB;DP=129;Dels=0.0;FS=2.68;HRun=0;HaplotypeScore=1.9912;MQ=59.86;MQ0=0;MQRankSum=-0.834;QD=11.39;ReadPosRankSum=0.815;SNPEFF_AMINO_ACID_CHANGE=Y35;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122056394_122056495;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSTA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264474    GT:AD:DP:GQ:PL    0/1:81,48:129:99:1499,0,2421
3    122060404    rs34173813    C    T    1307.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.971;DB;DP=88;Dels=0.0;FS=7.19;HRun=0;HaplotypeScore=0.9979;MQ=59.74;MQ0=0;MQRankSum=1.46;QD=14.86;ReadPosRankSum=0.242;SNPEFF_AMINO_ACID_CHANGE=T96M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122060286_122060819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSTA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264474    GT:AD:DP:GQ:PL    0/1:44,44:88:99:1337,0,1305
3    122086960    rs3749212    C    T    596.74    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.113;DB;DP=47;Dels=0.0;FS=1.488;HRun=2;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.995;QD=12.7;ReadPosRankSum=-0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291458    GT:AD:DP:GQ:PL    0/1:26,21:47:99:627,0,834
3    122121563    rs3838601    T    TTTTC    994.99    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.829;DB;DP=42;FS=4.322;HRun=0;HaplotypeScore=156.8702;IndelType=I;MQ=58.04;MQ0=0;MQRankSum=-0.31;QD=23.69;ReadPosRankSum=-1.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM162A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232125    GT:AD:DP:GQ:PL    0/1:27,14:42:99:1034,0,985
3    122128466    rs4306808    G    C    868.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM162A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469967    GT:AD:DP:GQ:PL    1/1:0,26:26:69.20:902,69,0
3    122145810    rs4677950    T    A    587.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494339    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:620,45,0
3    122168341    rs3749209    C    A    100.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.05;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464940    GT:AD:DP:GQ:PL    0/1:6,4:10:99:131,0,220
3    122182657    .    A    G    69.01    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.8;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344337    GT:AD:DP:GQ:PL    0/1:2,3:5:67.95:99,0,68
3    122186188    rs4678193    C    T    1099.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_AMINO_ACID_CHANGE=S73N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122186169_122186276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344337    GT:AD:DP:GQ:PL    1/1:0,32:32:84.25:1133,84,0
3    122215166    rs9289194    A    AAC    373.10    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=24.7298;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=0.158;QD=33.92;ReadPosRankSum=-1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344337    GT:AD:DP:GQ:PL    0/1:1,10:11:0.95:411,0,1
3    122247673    rs16833165    T    C    97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.12;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462315    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,140
3    122255708    rs2270859    G    A    405.73    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.409;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.179;QD=13.09;ReadPosRankSum=0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360356    GT:AD:DP:GQ:PL    0/1:17,14:31:99:436,0,518
3    122259606    rs9851180    T    C    1625.26    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8939;MQ=59.68;MQ0=0;MQRankSum=0.844;QD=18.47;ReadPosRankSum=-0.459;SNPEFF_AMINO_ACID_CHANGE=Y451C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122259319_122259699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452457    GT:AD:DP:GQ:PL    0/1:33,55:88:99:1655,0,1080
3    122259640    rs28365795    T    C    1256.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.469;DB;DP=80;Dels=0.0;FS=4.444;HRun=0;HaplotypeScore=1.9705;MQ=59.54;MQ0=0;MQRankSum=-0.33;QD=15.7;ReadPosRankSum=0.96;SNPEFF_AMINO_ACID_CHANGE=I440V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122259319_122259699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452457    GT:AD:DP:GQ:PL    0/1:32,48:80:99:1286,0,1040
3    122259745    .    G    GT    371.24    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.572;DP=49;FS=2.09;HRun=10;HaplotypeScore=177.3101;IndelType=I;MQ=60.24;MQ0=0;MQRankSum=1.685;QD=7.58;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360356    GT:AD:DP:GQ:PL    0/1:31,18:49:99:410,0,423
3    122259782    rs9868934    A    G    319.45    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.59;MQ0=0;MQRankSum=-0.232;QD=13.31;ReadPosRankSum=-0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360356    GT:AD:DP:GQ:PL    0/1:13,11:24:99:349,0,423
3    122269380    rs1979853    A    G    287.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=19.2;ReadPosRankSum=-1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360356    GT:AD:DP:GQ:PL    0/1:6,9:15:99:318,0,210
3    122288210    rs2332285    G    A    674.78    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.148;DB;DP=63;Dels=0.0;FS=0.983;HRun=1;HaplotypeScore=1.973;MQ=59.7;MQ0=0;MQRankSum=0.316;QD=10.71;ReadPosRankSum=-0.948;SNPEFF_AMINO_ACID_CHANGE=R425K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122287336_122288871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX3L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296161    GT:AD:DP:GQ:PL    0/1:38,25:63:99:705,0,1220
3    122289005    rs55797836    A    G    107.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=15.29;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296161    GT:AD:DP:GQ:PL    0/1:3,4:7:98.05:137,0,98
3    122340626    rs12636277    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310366    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
3    122345870    rs17208928    C    T    869.58    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.996;DB;DP=53;Dels=0.0;FS=2.534;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.916;QD=16.41;ReadPosRankSum=-0.531;SNPEFF_AMINO_ACID_CHANGE=S223;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122345674_122345880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542823    GT:AD:DP:GQ:PL    0/1:25,27:53:99:900,0,784
3    122354037    rs1106346    A    G    792.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=K278;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122353867_122354041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493645    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:826,66,0
3    122354052    rs1106345    A    G    241.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=21;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.746;QD=11.52;ReadPosRankSum=-0.959;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473627    GT:AD:DP:GQ:PL    0/1:12,9:21:99:272,0,438
3    122354716    rs61754895    C    T    683.86    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.305;DB;DP=54;Dels=0.0;FS=1.065;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.879;QD=12.66;ReadPosRankSum=0.026;SNPEFF_AMINO_ACID_CHANGE=D299;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122354658_122355035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493645    GT:AD:DP:GQ:PL    0/1:30,24:54:99:714,0,824
3    122354792    rs12489170    G    A    443.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=40;Dels=0.0;FS=2.944;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.532;QD=11.09;ReadPosRankSum=1.261;SNPEFF_AMINO_ACID_CHANGE=G325R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122354658_122355035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000493645    GT:AD:DP:GQ:PL    0/1:20,20:40:99:474,0,594
3    122406077    rs790131    G    A    270.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.208;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.618;QD=15.04;ReadPosRankSum=-2.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310290    GT:AD:DP:GQ:PL    0/1:9,9:18:99:301,0,272
3    122420050    rs61732765    C    T    352.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.746;QD=16.8;ReadPosRankSum=1.315;SNPEFF_AMINO_ACID_CHANGE=P802;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122418237_122420482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398162    GT:AD:DP:GQ:PL    0/1:9,12:21:99:383,0,233
3    122437321    rs7645033    T    C    7269.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=222;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4677;MQ=59.6;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=Y1360;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122437206_122437805;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398162    GT:AD:DP:GQ:PL    1/1:0,219:222:99:7269,572,0
3    122437834    rs3821688    A    G    1564.79    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.312;DB;DP=104;Dels=0.0;FS=4.624;HRun=0;HaplotypeScore=2.9788;MQ=60.0;MQ0=0;MQRankSum=-0.564;QD=15.05;ReadPosRankSum=-1.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310290    GT:AD:DP:GQ:PL    0/1:52,51:104:99:1595,0,1522
3    122447574    rs3732832    A    C    410.13    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.737;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.138;QD=14.65;ReadPosRankSum=0.322;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398157    GT:AD:DP:GQ:PL    0/1:15,13:28:99:440,0,537
3    122447596    rs7648262    C    T    842.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=38.28;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398157    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:875,66,0
3    122471407    rs34273669    TA    T    99.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=22;FS=0.0;HRun=16;HaplotypeScore=132.5137;IndelType=D;MQ=58.32;MQ0=0;MQRankSum=0.896;QD=4.54;ReadPosRankSum=0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPBAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465044    GT:AD:DP:GQ:PL    0/1:11,10:22:75.49:139,0,75
3    122474305    rs6794019    C    A    242.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8808;MQ=54.65;MQ0=0;MQRankSum=0.088;QD=13.5;ReadPosRankSum=1.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPBAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478601    GT:AD:DP:GQ:PL    0/1:9,9:18:99:273,0,231
3    122512631    rs3806643    G    A    161.13    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.581;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=11.51;ReadPosRankSum=-0.065;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261038    GT:AD:DP:GQ:PL    0/1:8,6:14:99:191,0,260
3    122512689    rs115445641    C    T    41.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.39;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261038    GT:AD:DP:GQ:PL    0/1:2,3:5:51.99:72,0,52
3    122512749    rs79039553    A    G    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261038    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    122513964    rs891406    A    C    35.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPBAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306103    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:66,6,0
3    122545494    rs9853452    A    G    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261038    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:69,0,67
3    122598291    rs2288677    A    G    1679.03    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=101;Dels=0.0;FS=3.434;HRun=1;HaplotypeScore=1.9866;MQ=59.08;MQ0=0;MQRankSum=0.878;QD=16.62;ReadPosRankSum=0.762;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261038    GT:AD:DP:GQ:PL    0/1:45,56:101:99:1709,0,1556
3    122629589    rs7622250    A    G    106.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.16;MQ0=0;QD=26.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393583    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:139,12,0
3    122630323    rs2303982    T    G    170.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.33;SNPEFF_AMINO_ACID_CHANGE=T1034P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122630207_122630382;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:203,15,0
3    122630346    rs2303983    T    C    250.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_AMINO_ACID_CHANGE=D1026G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122630207_122630382;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
3    122631896    rs2276782    A    T    253.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_AMINO_ACID_CHANGE=V782D;SNPEFF_CODON_CHANGE=gTc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122631690_122631908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418793    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
3    122632436    rs2276781    A    G    57.04    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.106;QD=5.19;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=M684T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122632381_122632528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418793    GT:AD:DP:GQ:PL    0/1:8,3:11:87.03:87,0,252
3    122642263    rs7651952    G    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=13.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:83,6,0
3    122642294    rs7619187    T    C    122.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.48;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    0/1:2,4:6:24.96:153,0,25
3    122642401    rs2276780    G    A    431.95    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.409;DB;DP=26;Dels=0.0;FS=5.849;HRun=0;HaplotypeScore=4.2633;MQ=55.4;MQ0=0;MQRankSum=-1.354;QD=16.61;ReadPosRankSum=0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    0/1:12,14:26:99:462,0,290
3    122642415    rs2276779    G    C    430.07    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.111;DB;DP=34;Dels=0.0;FS=9.023;HRun=0;HaplotypeScore=7.4133;MQ=55.8;MQ0=0;MQRankSum=-1.085;QD=12.65;ReadPosRankSum=0.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    0/1:15,19:34:99:460,0,321
3    122642590    rs2276778    G    A    1141.88    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=1.326;DB;DP=65;Dels=0.0;FS=2.137;HRun=1;HaplotypeScore=0.9894;MQ=55.97;MQ0=0;MQRankSum=0.587;QD=17.57;ReadPosRankSum=0.983;SNPEFF_AMINO_ACID_CHANGE=I324;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122642464_122642599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418793    GT:AD:DP:GQ:PL    0/1:29,36:65:99:1172,0,848
3    122642724    rs3832229    A    ACAC    1193.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=55.8389;IndelType=I;MQ=49.29;MQ0=0;QD=62.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    1/1:1,18:19:54.19:1236,54,0
3    122645277    rs2276777    C    T    97.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=6.94;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=P308;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122645239_122645524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418793    GT:AD:DP:GQ:PL    0/1:10,4:14:99:127,0,262
3    122645304    rs2276776    G    A    182.19    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=19;Dels=0.0;FS=5.008;HRun=0;HaplotypeScore=0.8667;MQ=57.77;MQ0=0;MQRankSum=-0.272;QD=9.59;ReadPosRankSum=-0.091;SNPEFF_AMINO_ACID_CHANGE=N299;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122645239_122645524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418793    GT:AD:DP:GQ:PL    0/1:12,7:19:99:212,0,354
3    122645606    rs79543585    G    A    112.37    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.183;DB;DP=21;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.394;QD=5.35;ReadPosRankSum=-2.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    0/1:14,6:21:99:142,0,429
3    122646591    rs73856750    C    A    64.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    0/1:4,3:7:93.27:95,0,93
3    122646734    rs2276775    C    T    340.11    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.425;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9248;MQ=59.2;MQ0=0;MQRankSum=-0.592;QD=11.73;ReadPosRankSum=-1.381;SNPEFF_AMINO_ACID_CHANGE=T193;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122646637_122646850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418793    GT:AD:DP:GQ:PL    0/1:13,16:29:99:370,0,374
3    122646828    rs2276774    A    G    381.91    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=0.269;DB;DP=26;Dels=0.0;FS=4.117;HRun=0;HaplotypeScore=3.9348;MQ=58.02;MQ0=0;MQRankSum=0.216;QD=14.69;ReadPosRankSum=-1.132;SNPEFF_AMINO_ACID_CHANGE=I162T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122646637_122646850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418793    GT:AD:DP:GQ:PL    0/1:9,17:26:99:412,0,235
3    122646929    rs79679922    C    T    104.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=14.95;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    0/1:3,4:7:98.07:135,0,98
3    122667277    rs2288678    A    G    79.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.38;QD=13.24;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449546    GT:AD:DP:GQ:PL    0/1:2,4:6:64.61:109,0,65
3    122680171    rs4677985    A    G    99.59    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=7.11;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195173    GT:AD:DP:GQ:PL    0/1:10,4:14:99:130,0,299
3    122807995    rs836860    G    A    798.97    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=3.451;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.858;QD=22.83;ReadPosRankSum=-0.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:10,25:35:99:829,0,254
3    122811042    rs836863    A    G    167.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
3    122821385    rs2241961    T    C    312.37    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.832;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.55;MQ0=0;MQRankSum=-0.566;QD=19.52;ReadPosRankSum=0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:5,11:16:99:342,0,157
3    122835210    rs836840    A    G    153.07    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.549;QD=8.06;ReadPosRankSum=-1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:12,7:19:99:183,0,412
3    122843020    rs836854    T    C    685.30    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.423;DB;DP=46;Dels=0.0;FS=6.267;HRun=2;HaplotypeScore=1.8924;MQ=59.09;MQ0=0;MQRankSum=-0.353;QD=14.9;ReadPosRankSum=0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:22,24:46:99:715,0,608
3    122843110    rs861375    G    T    740.01    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=3.908;DB;DP=58;Dels=0.0;FS=3.671;HRun=3;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.647;QD=12.76;ReadPosRankSum=1.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:31,27:58:99:770,0,839
3    122849625    rs2673334    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    122864436    rs8739    G    A    395.32    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=57.53;MQ0=0;MQRankSum=0.166;QD=10.4;ReadPosRankSum=-0.257;SNPEFF_AMINO_ACID_CHANGE=A326;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_122864369_122864439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:24,14:38:99:425,0,684
3    122864587    rs3215241    TAGAC    T    227.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=33.6172;IndelType=D;MQ=49.37;MQ0=0;MQRankSum=-0.736;QD=37.96;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:1,5:6:63.01:267,0,63
3    122864771    rs1976714    G    T    218.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-1.406;QD=15.58;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:7,7:14:99:248,0,225
3    122864807    rs3841639    T    TG    398.76    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=4.143;DB;DP=32;FS=0.0;HRun=3;HaplotypeScore=163.6772;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=-1.061;QD=12.46;ReadPosRankSum=-1.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:19,13:32:99:438,0,555
3    122864818    rs1567991    T    C    358.53    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.187;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.097;QD=10.24;ReadPosRankSum=-1.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:20,14:35:99:389,0,707
3    122865136    rs2673345    T    A    759.39    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=2.104;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.231;QD=18.52;ReadPosRankSum=0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472319    GT:AD:DP:GQ:PL    0/1:17,24:41:99:789,0,529
3    122865260    rs2247505    G    A    39.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472319    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
3    122865263    rs2673344    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472319    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
3    122873923    rs2717225    G    C    1496.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485208    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1530,114,0
3    122880118    rs3828393    G    A    669.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.22;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.074;QD=17.16;ReadPosRankSum=0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316218    GT:AD:DP:GQ:PL    0/1:13,26:39:99:699,0,406
3    122942782    rs12487554    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEC22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466519    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    123008519    rs4677881    T    G    546.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=27.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309879    GT:AD:DP:GQ:PL    1/1:0,20:20:45.14:579,45,0
3    123010276    rs9809236    G    A    830.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309879    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:864,66,0
3    123014877    rs9881951    C    T    566.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466617    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:599,45,0
3    123015094    rs9882534    G    C    981.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466617    GT:AD:DP:GQ:PL    1/1:0,32:32:84.25:1015,84,0
3    123018963    rs4482616    A    G    871.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466617    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:904,72,0
3    123021838    rs9877581    A    G    447.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=27.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309879    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:481,39,0
3    123021870    rs9844212    G    C    749.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309879    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:782,57,0
3    123037047    rs4327330    A    C    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309879    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    123047357    rs186526882    C    T    113.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=14.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476455    GT:AD:DP:GQ:PL    0/1:3,5:8:99:143,0,104
3    123047478    rs9855635    A    G    957.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476455    GT:AD:DP:GQ:PL    1/1:0,32:32:81.23:990,81,0
3    123047666    rs9855969    A    G    385.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476455    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:419,33,0
3    123049707    rs9829332    G    T    394.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476455    GT:AD:DP:GQ:PL    1/1:0,16:16:39.04:427,39,0
3    123049938    rs6806529    A    C    294.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=24.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476455    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:328,27,0
3    123066485    rs6438788    G    T    779.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=28.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470367    GT:AD:DP:GQ:PL    1/1:0,26:27:69.16:812,69,0
3    123066555    rs112525497    A    AAAGG    5215.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.0;HRun=0;HaplotypeScore=270.1226;IndelType=I;MQ=53.9;MQ0=0;QD=71.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470367    GT:AD:DP:GQ:PL    1/1:8,60:73:99:5216,208,0
3    123066883    rs10669335    A    AGTGT    337.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=87.3973;IndelType=I;MQ=55.45;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470367    GT:AD:DP:GQ:PL    1/1:5,6:12:20.81:380,21,0
3    123167249    rs4678027    G    A    43.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.51;SNPEFF_AMINO_ACID_CHANGE=G48;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123166259_123168605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000462833    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    123219137    rs959432    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTPLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469317    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    123332875    rs11399895    G    GT    89.62    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.21;DB;DP=102;FS=2.414;HRun=16;HaplotypeScore=756.6719;IndelType=I;MQ=53.38;MQ0=0;MQRankSum=0.07;QD=0.88;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    0/1:72,11:102:99:129,0,479
3    123378534    rs39639    C    G    452.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:486,36,0
3    123382831    rs820324    A    G    2253.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510775    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2286,175,0
3    123385677    rs820325    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511058    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    123411589    rs40305    G    A    440.94    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.137;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.966;QD=18.37;ReadPosRankSum=0.732;SNPEFF_AMINO_ACID_CHANGE=T1117;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123411582_123411698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    0/1:10,14:24:99:471,0,279
3    123418913    rs865358    G    A    2669.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3639;MQ=59.38;MQ0=0;QD=35.6;SNPEFF_AMINO_ACID_CHANGE=N1065;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123418867_123419852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2703,199,0
3    123440967    rs820355    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    123441179    rs820356    C    T    114.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.31;MQ0=0;QD=28.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
3    123451773    rs9833275    G    C    761.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=26.25;SNPEFF_AMINO_ACID_CHANGE=L496V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123451743_123451949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359169    GT:AD:DP:GQ:PL    1/1:0,29:29:57.19:794,57,0
3    123452838    rs4678047    G    A    1797.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=T335;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123452534_123453069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1831,144,0
3    123456070    rs66847158    G    GA    91.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=14;HaplotypeScore=78.3359;IndelType=I;MQ=50.18;MQ0=0;QD=10.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506361    GT:AD:DP:GQ:PL    1/1:2,5:9:18.58:133,19,0
3    123456432    rs2168439    C    T    1707.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=28.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510571    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1740,138,0
3    123457711    rs2198766    C    A    416.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510571    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:449,33,0
3    123457893    rs9840993    G    A    1209.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_AMINO_ACID_CHANGE=P147S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123457744_123457909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    1/1:0,33:33:96.30:1243,96,0
3    123470991    rs4677901    G    T    128.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346322    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
3    123633612    rs11551801    G    A    127.04    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=16;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.355;QD=7.94;ReadPosRankSum=1.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419247    GT:AD:DP:GQ:PL    0/1:10,6:16:99:157,0,316
3    123634046    rs2700373    G    A    939.65    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=3.387;DB;DP=73;Dels=0.0;FS=6.81;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=12.87;ReadPosRankSum=0.24;SNPEFF_AMINO_ACID_CHANGE=S312;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123634046_123634136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419247    GT:AD:DP:GQ:PL    0/1:42,31:73:99:970,0,1189
3    123650432    rs2271969    A    G    159.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.0933;MQ=56.79;MQ0=0;MQRankSum=-1.97;QD=6.66;ReadPosRankSum=1.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471054    GT:AD:DP:GQ:PL    0/1:12,12:24:99:190,0,375
3    123650447    rs10573718    TA    T    30.05    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=13;FS=0.0;HRun=16;HaplotypeScore=93.2986;IndelType=D;MQ=53.93;MQ0=0;MQRankSum=-1.495;QD=2.31;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471054    GT:AD:DP:GQ:PL    0/1:7,6:13:29.71:69,0,30
3    123652476    rs6784695    G    A    330.86    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=4.06;DB;DP=30;Dels=0.0;FS=5.371;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.167;QD=11.03;ReadPosRankSum=0.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310351    GT:AD:DP:GQ:PL    0/1:17,13:30:99:361,0,498
3    123665448    rs1879362    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417438    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:78,6,0
3    123665902    rs17310144    T    G    2070.24    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.387;DB;DP=179;Dels=0.0;FS=2.689;HRun=1;HaplotypeScore=0.9665;MQ=59.48;MQ0=0;MQRankSum=0.973;QD=11.57;ReadPosRankSum=1.281;SNPEFF_AMINO_ACID_CHANGE=T165P;SNPEFF_CODON_CHANGE=Acg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123665650_123666166;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000485727    GT:AD:DP:GQ:PL    0/1:106,73:179:99:2100,0,3295
3    123666192    rs17375977    C    T    805.56    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.427;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.07;MQ0=0;MQRankSum=-0.805;QD=10.74;ReadPosRankSum=-0.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417438    GT:AD:DP:GQ:PL    0/1:44,30:75:99:836,0,1364
3    123688760    rs34337446    C    G    61.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.26;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487124    GT:AD:DP:GQ:PL    0/1:3,3:6:91.53:92,0,108
3    123988039    rs2272486    T    C    452.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.471;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.554;QD=12.58;ReadPosRankSum=-1.44;SNPEFF_AMINO_ACID_CHANGE=H300;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_123987590_123988102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    0/1:18,18:36:99:483,0,524
3    124044949    rs2289778    C    T    2006.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=F403;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124044827_124045018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2040,153,0
3    124066121    rs67454662    C    CTG    99.02    PASS    AB=0.898;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=279.0012;IndelType=I;MQ=52.46;MQ0=0;MQRankSum=1.408;QD=2.25;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    0/1:32,5:44:71.83:138,0,72
3    124113929    rs482285    A    T    637.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:671,48,0
3    124128938    rs647010    A    G    588.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:621,48,0
3    124129357    rs9809750    T    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    124132263    rs2289846    A    T    337.11    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.57;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.669;QD=16.05;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    0/1:10,11:21:99:367,0,353
3    124132568    rs6762346    T    G    66.07    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=6.61;ReadPosRankSum=1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    0/1:7,3:10:96.07:96,0,259
3    124160679    rs113135607    GA    G    81.94    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;FS=0.0;HRun=13;HaplotypeScore=79.4426;IndelType=D;MQ=55.69;MQ0=0;MQRankSum=1.381;QD=5.85;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    0/1:6,7:14:99:121,0,108
3    124165217    rs624450    G    A    486.08    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.393;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.45;MQ0=0;MQRankSum=-1.16;QD=16.2;ReadPosRankSum=0.814;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    0/1:11,18:30:99:516,0,346
3    124174337    rs4677927    A    C    267.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:300,24,0
3    124195987    rs572145    T    C    287.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240874    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
3    124209438    rs2289841    A    G    188.92    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=26.99;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393501    GT:AD:DP:GQ:PL    0/1:1,6:7:16.73:219,0,17
3    124237343    .    G    A    740.14    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DP=54;Dels=0.0;FS=4.723;HRun=0;HaplotypeScore=2.3883;MQ=58.71;MQ0=0;MQRankSum=-0.347;QD=13.71;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360013    GT:AD:DP:GQ:PL    0/1:26,28:54:99:770,0,788
3    124281980    rs2256831    T    C    318.79    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.68;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.36;MQ0=0;MQRankSum=-0.659;QD=8.86;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360013    GT:AD:DP:GQ:PL    0/1:23,13:36:99:349,0,712
3    124303786    rs2250757    G    C    38.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.69;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:3,2:5:68.42:68,0,86
3    124351316    rs1708303    G    A    673.81    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.29;MQ0=0;MQRankSum=0.776;QD=16.43;ReadPosRankSum=-0.161;SNPEFF_AMINO_ACID_CHANGE=V115;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124351267_124351550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393496    GT:AD:DP:GQ:PL    0/1:15,26:41:99:704,0,375
3    124351424    rs1660038    T    C    1063.88    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.469;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.7;MQ0=0;MQRankSum=0.738;QD=13.82;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=L151;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124351267_124351550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393496    GT:AD:DP:GQ:PL    0/1:40,36:77:99:1094,0,1202
3    124352573    rs652046    A    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471431    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:75,0,26
3    124369640    rs11372663    T    TA    1246.72    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=6.656;DB;DP=81;FS=6.662;HRun=0;HaplotypeScore=302.869;IndelType=I;MQ=59.68;MQ0=0;MQRankSum=-0.098;QD=15.39;ReadPosRankSum=-0.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:48,33:81:99:1286,0,1728
3    124369650    rs2291988    T    C    938.60    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DB;DP=81;Dels=0.0;FS=8.269;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.138;QD=11.59;ReadPosRankSum=-0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:45,36:81:99:969,0,1464
3    124374259    rs4677938    G    A    123.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454902    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
3    124374405    rs4677939    A    C    586.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.731;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=19.55;ReadPosRankSum=0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454902    GT:AD:DP:GQ:PL    0/1:12,18:30:99:617,0,326
3    124376653    rs106520    G    A    509.44    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=32;Dels=0.0;FS=1.455;HRun=1;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=-0.644;QD=15.92;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:14,18:32:99:539,0,412
3    124377196    rs10804562    G    A    374.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.994;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.766;QD=13.38;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:16,12:28:99:405,0,454
3    124378386    rs333297    C    G    200.48    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.405;QD=13.37;ReadPosRankSum=-1.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:8,7:15:99:230,0,232
3    124378412    rs10755078    A    G    168.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.968;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=12.06;ReadPosRankSum=-0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:8,6:14:99:199,0,287
3    124379641    rs333291    C    A    112.68    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=8.05;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:9,5:14:99:143,0,323
3    124379748    rs333290    G    C    737.40    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=53;Dels=0.0;FS=4.405;HRun=2;HaplotypeScore=0.9789;MQ=59.13;MQ0=0;MQRankSum=0.395;QD=13.91;ReadPosRankSum=-0.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:29,24:53:99:767,0,812
3    124379817    rs333289    T    C    855.68    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.772;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.319;QD=12.77;ReadPosRankSum=0.23;SNPEFF_AMINO_ACID_CHANGE=I179;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124379770_124379820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000459915    GT:AD:DP:GQ:PL    0/1:33,34:67:99:886,0,1010
3    124393074    rs333356    A    G    119.86    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=7.49;ReadPosRankSum=-2.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:11,5:16:99:150,0,404
3    124393595    rs333355    A    G    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.91;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,150
3    124393610    rs333354    A    G    34.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.74;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:4,2:6:64.41:64,0,124
3    124397249    rs35286809    AT    A    55.27    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=18;FS=0.0;HRun=12;HaplotypeScore=95.7287;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=-0.884;QD=3.07;ReadPosRankSum=0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393496    GT:AD:DP:GQ:PL    0/1:12,6:18:94.30:94,0,227
3    124398112    rs13097459    C    T    83.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393496    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
3    124412524    rs2289428    T    G    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,69
3    124412634    rs333283    G    T    408.66    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.236;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.782;QD=9.5;ReadPosRankSum=-1.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:26,17:43:99:439,0,778
3    124415222    rs333280    C    A    144.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:4,5:9:95.78:174,0,96
3    124435888    rs332506    T    C    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
3    124436345    rs702041    G    A    68.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.0;QD=9.75;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:3,4:7:98.25:98,0,106
3    124436362    rs35793557    T    A    65.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=13.02;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KALRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291478    GT:AD:DP:GQ:PL    0/1:2,3:5:68.42:95,0,68
3    124449209    rs2279198    A    G    177.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.91;QD=12.68;ReadPosRankSum=0.068;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232607    GT:AD:DP:GQ:PL    0/1:7,7:14:99:207,0,214
3    124449291    rs1139538    A    G    225.33    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=32;Dels=0.0;FS=1.824;HRun=0;HaplotypeScore=0.0;MQ=51.49;MQ0=0;MQRankSum=1.252;QD=7.04;ReadPosRankSum=1.133;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413078    GT:AD:DP:GQ:PL    0/1:19,13:32:99:255,0,521
3    124454174    rs3772804    A    G    42.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.25;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232607    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
3    124458816    rs694897    C    G    349.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.606;DB;DP=24;Dels=0.0;FS=2.291;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.375;QD=14.55;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498715    GT:AD:DP:GQ:PL    0/1:12,12:24:99:379,0,391
3    124460895    rs11339821    CT    C    63.42    QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=60;FS=0.0;HRun=16;HaplotypeScore=456.9735;IndelType=D;MQ=51.09;MQ0=0;MQRankSum=-0.384;QD=1.06;ReadPosRankSum=-2.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498715    GT:AD:DP:GQ:PL    0/1:45,13:60:99:102,0,709
3    124462710    rs3772807    G    C    313.74    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.276;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.17;MQ0=0;MQRankSum=-0.322;QD=11.2;ReadPosRankSum=0.875;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487622    GT:AD:DP:GQ:PL    0/1:15,13:28:99:344,0,486
3    124567365    rs146962770    C    T    620.81    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.765;DB;DP=52;Dels=0.0;FS=1.448;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.179;QD=11.94;ReadPosRankSum=1.368;SNPEFF_AMINO_ACID_CHANGE=E134;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124567156_124567405;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296181    GT:AD:DP:GQ:PL    0/1:28,24:52:99:651,0,863
3    124627024    rs1127233    T    G    327.78    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.499;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6862;MQ=58.89;MQ0=0;MQRankSum=-0.341;QD=7.8;ReadPosRankSum=1.05;SNPEFF_AMINO_ACID_CHANGE=R502S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124626994_124627195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311075    GT:AD:DP:GQ:PL    0/1:27,15:42:99:358,0,823
3    124629222    rs142652695    TA    T    398.57    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=2.789;DB;DP=58;FS=1.227;HRun=12;HaplotypeScore=178.2721;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=0.503;QD=6.87;ReadPosRankSum=-0.903;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462728    GT:AD:DP:GQ:PL    0/1:30,26:58:99:438,0,727
3    124632127    rs2270780    A    G    375.51    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.713;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=2.388;QD=16.33;ReadPosRankSum=-1.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478191    GT:AD:DP:GQ:PL    0/1:10,13:23:99:406,0,343
3    124646705    rs10630030    A    AAAG    6619.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;FS=0.0;HRun=0;HaplotypeScore=286.935;IndelType=I;MQ=54.34;MQ0=0;QD=63.65;SNPEFF_AMINO_ACID_CHANGE=-62L;SNPEFF_CODON_CHANGE=-/CTT;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_3_124646379_124646837;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311075    GT:AD:DP:GQ:PL    1/1:10,92:104:99:6620,298,0
3    124653710    rs10934701    A    G    173.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497378    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
3    124689355    .    C    T    106.67    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.33;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482699    GT:AD:DP:GQ:PL    0/1:1,4:5:26.19:137,0,26
3    124692689    rs2270778    C    T    1770.45    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=4.672;DB;DP=128;Dels=0.0;FS=2.36;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=0.605;QD=13.83;ReadPosRankSum=-0.22;SNPEFF_AMINO_ACID_CHANGE=P1294;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124692575_124692749;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:67,61:128:99:1800,0,1858
3    124692785    rs2270779    C    T    646.34    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=3.656;DB;DP=50;Dels=0.0;FS=11.827;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.826;QD=12.93;ReadPosRankSum=2.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:29,21:50:99:676,0,758
3    124728394    rs6438867    T    C    254.85    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=23.17;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477536    GT:AD:DP:GQ:PL    0/1:3,8:11:90.53:285,0,91
3    124728472    rs6438868    C    G    854.25    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.335;QD=18.18;ReadPosRankSum=-0.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477536    GT:AD:DP:GQ:PL    0/1:19,28:47:99:884,0,670
3    124728626    rs6438869    A    G    1136.95    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.463;DB;DP=93;Dels=0.0;FS=5.663;HRun=0;HaplotypeScore=0.8941;MQ=59.35;MQ0=0;MQRankSum=-1.646;QD=12.23;ReadPosRankSum=0.97;SNPEFF_AMINO_ACID_CHANGE=M1039T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124728549_124728668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:54,39:93:99:1167,0,1622
3    124729193    rs6784454    T    G    209.17    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=16.09;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477536    GT:AD:DP:GQ:PL    0/1:6,7:13:99:239,0,198
3    124731485    rs10804567    C    G    989.24    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.516;DB;DP=66;Dels=0.0;FS=11.48;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.225;QD=14.99;ReadPosRankSum=-0.716;SNPEFF_AMINO_ACID_CHANGE=V980L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124731467_124732834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:27,39:66:99:1019,0,836
3    124732618    rs6790837    A    G    1412.84    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-1.09;QD=16.82;ReadPosRankSum=0.714;SNPEFF_AMINO_ACID_CHANGE=F602S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124731467_124732834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:33,51:84:99:1443,0,1101
3    124732842    rs6438871    C    A    957.04    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=5.73;DB;DP=63;Dels=0.0;FS=3.541;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.103;QD=15.19;ReadPosRankSum=1.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:29,34:63:99:987,0,752
3    124732976    rs6438872    G    T    138.79    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=19.83;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:2,5:7:54.61:169,0,55
3    124738107    rs59232004    C    T    818.95    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DB;DP=65;Dels=0.0;FS=3.115;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.634;QD=12.6;ReadPosRankSum=0.512;SNPEFF_AMINO_ACID_CHANGE=S529;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124738106_124738441;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:35,30:65:99:849,0,1074
3    124739892    rs6438874    G    A    568.49    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.547;DB;DP=31;Dels=0.0;FS=3.784;HRun=0;HaplotypeScore=4.6849;MQ=59.28;MQ0=0;MQRankSum=0.223;QD=17.77;ReadPosRankSum=0.75;SNPEFF_AMINO_ACID_CHANGE=A332;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124739636_124739974;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:12,19:31:99:598,0,366
3    124746049    rs2981546    A    G    150.36    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=8.84;ReadPosRankSum=0.955;SNPEFF_AMINO_ACID_CHANGE=S305P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124746049_124746351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:11,6:17:99:180,0,362
3    124746182    rs2333041    C    A    1007.98    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=3.443;DB;DP=68;Dels=0.0;FS=5.499;HRun=1;HaplotypeScore=1.2434;MQ=59.66;MQ0=0;MQRankSum=1.198;QD=14.82;ReadPosRankSum=0.47;SNPEFF_AMINO_ACID_CHANGE=P260;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124746049_124746351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1038,0,864
3    124746296    rs79038354    G    A    936.08    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.133;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=0.534;QD=10.29;ReadPosRankSum=-0.485;SNPEFF_AMINO_ACID_CHANGE=A222;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124746049_124746351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:56,35:91:99:966,0,1669
3    124746347    rs4404487    T    C    1027.44    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.568;DB;DP=64;Dels=0.0;FS=3.565;HRun=1;HaplotypeScore=0.9999;MQ=59.64;MQ0=0;MQRankSum=0.42;QD=16.05;ReadPosRankSum=0.168;SNPEFF_AMINO_ACID_CHANGE=S205;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124746049_124746351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:23,41:64:99:1057,0,762
3    124748226    rs2860440    G    A    1242.09    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.378;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=11.5;ReadPosRankSum=-0.016;SNPEFF_AMINO_ACID_CHANGE=G141;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124748039_124748332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311127    GT:AD:DP:GQ:PL    0/1:63,45:108:99:1272,0,1964
3    124802677    rs1574340    A    G    242.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=26.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314584    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:276,21,0
3    124802881    rs2981483    A    G    456.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=28.54;SNPEFF_AMINO_ACID_CHANGE=P327;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124802734_124802893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314584    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:490,39,0
3    124802888    rs2981482    C    T    440.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=R325Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124802734_124802893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314584    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:473,36,0
3    124837684    rs621383    T    C    749.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=28.82;SNPEFF_AMINO_ACID_CHANGE=I163V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124837613_124837700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479826    GT:AD:DP:GQ:PL    1/1:0,26:26:60.19:782,60,0
3    124839470    rs863642    G    A    393.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=24.6;SNPEFF_AMINO_ACID_CHANGE=P148L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124839443_124839530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479826    GT:AD:DP:GQ:PL    1/1:0,16:16:33.08:427,33,0
3    124854425    rs702048    T    C    568.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314584    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:601,45,0
3    124896861    rs545103    C    G    289.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314584    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:323,24,0
3    124951171    rs112084805    CT    C    83.91    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.147;DB;DP=41;FS=0.0;HRun=15;HaplotypeScore=234.2322;IndelType=D;MQ=52.41;MQ0=0;MQRankSum=-0.814;QD=2.05;ReadPosRankSum=-0.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496732    GT:AD:DP:GQ:PL    0/1:21,10:41:99:123,0,217
3    124951821    rs1053738    C    T    820.54    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.239;DB;DP=60;Dels=0.0;FS=2.191;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.713;QD=13.68;ReadPosRankSum=2.095;SNPEFF_AMINO_ACID_CHANGE=P583;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_124944405_124952783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF148;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360647    GT:AD:DP:GQ:PL    0/1:33,27:60:99:851,0,990
3    124953320    rs7619480    A    T    312.33    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.824;QD=14.2;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423114    GT:AD:DP:GQ:PL    0/1:10,12:22:99:342,0,355
3    124998098    rs10665336    C    CAAA    481.56    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=0.268;DB;DP=29;FS=2.447;HRun=11;HaplotypeScore=133.8694;IndelType=I;MQ=55.22;MQ0=0;MQRankSum=-1.391;QD=16.61;ReadPosRankSum=-2.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360647    GT:AD:DP:GQ:PL    0/1:15,10:29:99:521,0,384
3    125272968    rs184242634    C    A    195.55    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.904;DB;DP=30;Dels=0.0;FS=3.541;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.043;QD=6.52;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296220    GT:AD:DP:GQ:PL    0/1:19,11:30:99:226,0,614
3    125431244    rs2976761    G    A    1854.04    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=151;Dels=0.0;FS=0.653;HRun=0;HaplotypeScore=3.4902;MQ=47.23;MQ0=0;MQRankSum=-7.952;QD=12.28;ReadPosRankSum=1.044;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-388B5.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463158    GT:AD:DP:GQ:PL    0/1:69,82:151:99:1884,0,1954
3    125431510    rs2947714    T    C    89.39    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=17;Dels=0.0;FS=4.472;HRun=1;HaplotypeScore=0.0;MQ=44.26;MQ0=1;MQRankSum=-3.387;QD=5.26;ReadPosRankSum=-1.059;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-388B5.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463158    GT:AD:DP:GQ:PL    0/1:9,8:17:99:119,0,331
3    125443132    rs2976784    C    T    30.33    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=40.41;MQ0=0;MQRankSum=-1.881;QD=3.37;ReadPosRankSum=-0.361;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-388B5.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508347    GT:AD:DP:GQ:PL    0/1:5,4:9:60.32:60,0,176
3    125443454    rs9289258    A    G    255.94    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.852;DB;DP=62;Dels=0.0;FS=19.659;HRun=1;HaplotypeScore=0.0;MQ=41.24;MQ0=5;MQRankSum=-4.67;QD=4.13;ReadPosRankSum=-0.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-388B5.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508347    GT:AD:DP:GQ:PL    0/1:41,21:62:99:286,0,1139
3    125443512    rs9289259    T    C    862.26    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.541;DB;DP=81;Dels=0.0;FS=1.98;HRun=1;HaplotypeScore=0.9996;MQ=48.6;MQ0=3;MQRankSum=-3.048;QD=10.65;ReadPosRankSum=0.884;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-388B5.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508347    GT:AD:DP:GQ:PL    0/1:44,36:81:99:892,0,1442
3    125453151    rs2971276    A    C    55.21    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=53.23;MQ0=0;MQRankSum=-2.688;QD=3.25;ReadPosRankSum=-1.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-388B5.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418098    GT:AD:DP:GQ:PL    0/1:12,5:17:85.20:85,0,397
3    125466360    rs2684964    A    G    638.04    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=2.337;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=44.59;MQ0=10;MQRankSum=-7.699;QD=5.19;ReadPosRankSum=-0.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-388B5.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466578    GT:AD:DP:GQ:PL    0/1:79,43:123:99:668,0,2318
3    125509445    .    A    G    2241.73    MQFilter40    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.064;DP=241;DS;Dels=0.0;FS=3.369;HRun=2;HaplotypeScore=3.6219;MQ=32.64;MQ0=7;MQRankSum=0.567;QD=9.3;ReadPosRankSum=-1.175;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR548I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408810    GT:AD:DP:GQ:PL    0/1:136,105:241:99:2272,0,3080
3    125551290    rs2979943    G    A    583.66    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.102;DB;DP=48;Dels=0.0;FS=1.223;HRun=0;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=-0.139;QD=12.16;ReadPosRankSum=0.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092902.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408754    GT:AD:DP:GQ:PL    0/1:26,22:48:99:614,0,778
3    125551355    rs2979944    G    A    516.58    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.675;DB;DP=42;Dels=0.0;FS=16.566;HRun=0;HaplotypeScore=0.0;MQ=55.93;MQ0=0;MQRankSum=-2.053;QD=12.3;ReadPosRankSum=0.718;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092902.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408754    GT:AD:DP:GQ:PL    0/1:22,20:42:99:547,0,648
3    125551372    rs2947696    A    G    422.94    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=40;Dels=0.0;FS=12.519;HRun=2;HaplotypeScore=0.9993;MQ=54.47;MQ0=0;MQRankSum=-1.87;QD=10.57;ReadPosRankSum=0.014;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092902.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408754    GT:AD:DP:GQ:PL    0/1:23,17:40:99:453,0,705
3    125551385    rs2947697    C    G    246.02    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=36;Dels=0.0;FS=12.366;HRun=2;HaplotypeScore=0.0;MQ=53.82;MQ0=0;MQRankSum=-2.953;QD=6.83;ReadPosRankSum=-1.075;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092902.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408754    GT:AD:DP:GQ:PL    0/1:23,13:36:99:276,0,543
3    125635515    rs9840826    C    G    121.94    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.684;QD=15.24;ReadPosRankSum=0.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-666A20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467239    GT:AD:DP:GQ:PL    0/1:3,5:8:64.36:152,0,64
3    125637753    rs59319586    G    A    1058.96    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.304;DB;DP=70;Dels=0.0;FS=2.045;HRun=0;HaplotypeScore=0.9578;MQ=58.08;MQ0=0;MQRankSum=0.276;QD=15.13;ReadPosRankSum=1.333;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-666A20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467239    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1089,0,908
3    125643933    rs73858994    A    G    1396.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=104;Dels=0.0;FS=7.119;HRun=0;HaplotypeScore=0.9933;MQ=56.29;MQ0=0;MQRankSum=-1.233;QD=13.43;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    0/1:52,52:104:99:1426,0,1437
3    125643940    rs143065094    C    G    1377.98    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.219;DB;DP=99;Dels=0.0;FS=9.447;HRun=1;HaplotypeScore=0.0;MQ=56.3;MQ0=0;MQRankSum=-1.399;QD=13.92;ReadPosRankSum=0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    0/1:50,49:99:99:1408,0,1421
3    125648356    rs3828357    T    C    732.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.25;MQ0=0;QD=30.5;SNPEFF_AMINO_ACID_CHANGE=N135D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_125648118_125648410;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:765,60,0
3    125648529    rs9289274    T    C    114.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.31;MQ0=1;QD=19.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:147,12,0
3    125649194    rs138126565    G    A    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
3    125649294    rs7627571    T    C    225.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.18;MQ0=0;QD=28.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:259,21,0
3    125649621    rs7618335    C    T    75.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=18.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:108,9,0
3    125650752    rs11711638    T    C    136.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.52;MQ0=0;QD=27.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:169,15,0
3    125651317    rs13073802    C    T    31.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.33;MQ0=0;MQRankSum=0.72;QD=5.33;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    0/1:4,2:6:61.96:62,0,113
3    125651602    rs34411283    C    CT    165.24    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.511;DB;DP=23;FS=6.767;HRun=11;HaplotypeScore=79.7907;IndelType=I;MQ=56.39;MQ0=0;MQRankSum=-0.286;QD=7.18;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340333    GT:AD:DP:GQ:PL    0/1:14,9:23:99:204,0,153
3    125696088    rs145646784    G    A    387.55    MQFilter40    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.542;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.91;MQ0=44;MQRankSum=0.297;QD=4.97;ReadPosRankSum=-1.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROPN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504401    GT:AD:DP:GQ:PL    0/1:43,35:78:99:418,0,267
3    125701099    rs2270986    T    C    822.48    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.52;MQ0=0;MQRankSum=-1.625;QD=21.09;ReadPosRankSum=-1.508;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROPN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510450    GT:AD:DP:GQ:PL    0/1:14,25:39:99:852,0,396
3    125701948    rs12496921    C    G    94.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=9.41;ReadPosRankSum=-1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROPN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251776    GT:AD:DP:GQ:PL    0/1:4,6:10:99:124,0,142
3    125725268    rs111477552    TAACA    T    789.53    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.08;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=177.3527;IndelType=D;MQ=58.0;MQ0=0;MQRankSum=-0.198;QD=22.56;ReadPosRankSum=0.81;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_125725216_125725407;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000315891    GT:AD:DP:GQ:PL    0/1:18,17:35:99:829,0,1149
3    125725559    rs1044215    C    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.58;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000504118    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
3    125726048    rs2279819    G    C    679.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.74;SNPEFF_AMINO_ACID_CHANGE=L308;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_125725699_125726068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508835    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:712,54,0
3    125731161    rs1566715    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507008    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    125734272    rs2279820    G    A    158.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.649;DB;DP=27;Dels=0.0;FS=9.89;HRun=0;HaplotypeScore=0.734;MQ=59.14;MQ0=0;MQRankSum=0.026;QD=5.86;ReadPosRankSum=-1.826;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507008    GT:AD:DP:GQ:PL    0/1:18,9:27:99:188,0,540
3    125734308    rs2279821    G    A    603.48    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.685;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.67;MQ0=0;MQRankSum=1.351;QD=17.24;ReadPosRankSum=-0.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507008    GT:AD:DP:GQ:PL    0/1:13,22:35:99:633,0,363
3    125734465    rs9862310    G    A    334.62    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.824;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.165;QD=15.21;ReadPosRankSum=-2.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507008    GT:AD:DP:GQ:PL    0/1:10,12:22:99:365,0,304
3    125741465    rs12486459    T    G    116.58    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=16.65;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510651    GT:AD:DP:GQ:PL    0/1:2,5:7:62.23:147,0,62
3    125741592    rs3817079    C    T    1442.60    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.033;DB;DP=76;Dels=0.0;FS=2.89;HRun=0;HaplotypeScore=1.8288;MQ=60.0;MQ0=0;MQRankSum=0.381;QD=18.98;ReadPosRankSum=0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510651    GT:AD:DP:GQ:PL    0/1:31,45:76:99:1473,0,1008
3    125741901    rs2270984    A    G    288.81    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.176;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.866;QD=13.75;ReadPosRankSum=-0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510651    GT:AD:DP:GQ:PL    0/1:11,10:21:99:319,0,382
3    125741925    rs2270983    T    G    175.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=12.51;ReadPosRankSum=-0.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510651    GT:AD:DP:GQ:PL    0/1:8,6:14:99:205,0,290
3    125775061    rs78137633    C    T    103.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315891    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,137
3    125775228    rs7613944    T    C    1135.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4942;MQ=59.5;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=T134;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_125775201_125775356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513723    GT:AD:DP:GQ:PL    1/1:0,37:37:93.26:1168,93,0
3    125786662    rs36125006    G    GA    140.49    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.298;DB;DP=15;FS=3.31;HRun=10;HaplotypeScore=73.2354;IndelType=I;MQ=59.91;MQ0=0;MQRankSum=-0.174;QD=9.37;ReadPosRankSum=-0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509452    GT:AD:DP:GQ:PL    0/1:7,7:15:99:180,0,134
3    125786695    rs4308225    G    A    402.08    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.906;DB;DP=27;Dels=0.0;FS=3.802;HRun=1;HaplotypeScore=0.7887;MQ=58.68;MQ0=0;MQRankSum=-0.231;QD=14.89;ReadPosRankSum=0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509452    GT:AD:DP:GQ:PL    0/1:12,14:27:99:432,0,275
3    125786760    rs4308226    G    A    1065.25    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.89;DB;DP=66;Dels=0.0;FS=1.308;HRun=0;HaplotypeScore=1.7552;MQ=59.3;MQ0=0;MQRankSum=1.487;QD=16.14;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509452    GT:AD:DP:GQ:PL    0/1:30,35:66:99:1095,0,836
3    125786879    rs4234270    T    C    2404.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.41;MQ0=0;QD=30.83;SNPEFF_AMINO_ACID_CHANGE=T62A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_125786790_125787089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315891    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2438,205,0
3    125787126    rs6438966    C    T    70.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=7.78;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315891    GT:AD:DP:GQ:PL    0/1:5,4:9:99:100,0,184
3    125824382    rs10934744    C    A    39.61    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=7.92;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462808    GT:AD:DP:GQ:PL    0/1:2,3:5:33.20:70,0,33
3    125824899    rs4646754    G    A    51.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.7887;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=7.32;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273450    GT:AD:DP:GQ:PL    0/1:4,3:7:81.23:81,0,98
3    125826059    rs1127717    T    C    875.70    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.928;DB;DP=80;Dels=0.0;FS=11.906;HRun=1;HaplotypeScore=0.9989;MQ=59.71;MQ0=0;MQRankSum=0.561;QD=10.95;ReadPosRankSum=1.426;SNPEFF_AMINO_ACID_CHANGE=D692G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_125825984_125826089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452905    GT:AD:DP:GQ:PL    0/1:44,35:80:99:906,0,1333
3    125826213    rs2276730    C    T    81.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273450    GT:AD:DP:GQ:PL    0/1:1,3:4:20.46:111,0,20
3    125833260    rs2290053    C    T    95.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.93;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273450    GT:AD:DP:GQ:PL    0/1:4,4:8:99:125,0,101
3    125843400    rs3217578    A    AG    412.94    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=18;FS=0.0;HRun=3;HaplotypeScore=107.7526;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=-0.467;QD=22.94;ReadPosRankSum=-1.401;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476245    GT:AD:DP:GQ:PL    0/1:5,13:18:74.80:452,0,75
3    125849238    rs2002287    G    A    159.47    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=19.93;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473607    GT:AD:DP:GQ:PL    0/1:2,6:8:24.17:189,0,24
3    125850101    rs4646733    C    T    432.89    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=37;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.9992;MQ=58.74;MQ0=0;MQRankSum=0.111;QD=11.7;ReadPosRankSum=1.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473607    GT:AD:DP:GQ:PL    0/1:18,19:37:99:463,0,506
3    125850102    rs4646732    A    G    439.71    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.49;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=58.74;MQ0=0;MQRankSum=-0.649;QD=11.88;ReadPosRankSum=1.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473607    GT:AD:DP:GQ:PL    0/1:18,19:37:99:470,0,571
3    125850169    rs3821451    T    C    1170.59    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=90;Dels=0.0;FS=1.963;HRun=2;HaplotypeScore=3.5217;MQ=58.71;MQ0=0;MQRankSum=-0.341;QD=13.01;ReadPosRankSum=-0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473607    GT:AD:DP:GQ:PL    0/1:46,44:90:99:1201,0,1474
3    125850193    rs3816366    A    G    1221.66    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.576;DB;DP=120;Dels=0.0;FS=15.158;HRun=0;HaplotypeScore=7.5111;MQ=58.89;MQ0=0;MQRankSum=-0.564;QD=10.1;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473607    GT:AD:DP:GQ:PL    0/1:64,55:120:99:1252,0,1922
3    125850381    rs2305228    A    G    382.91    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.669;DB;DP=29;Dels=0.0;FS=6.232;HRun=1;HaplotypeScore=0.9159;MQ=59.2;MQ0=0;MQRankSum=-0.627;QD=13.2;ReadPosRankSum=-0.905;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473607    GT:AD:DP:GQ:PL    0/1:16,13:29:99:413,0,476
3    125850434    rs2305227    C    T    175.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9853;MQ=60.0;MQ0=0;MQRankSum=-2.047;QD=14.63;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473607    GT:AD:DP:GQ:PL    0/1:6,6:12:99:206,0,175
3    125854311    rs3216713    TC    T    194.42    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=15;FS=0.0;HRun=7;HaplotypeScore=105.8684;IndelType=D;MQ=50.32;MQ0=0;MQRankSum=1.733;QD=12.96;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273450    GT:AD:DP:GQ:PL    0/1:6,9:15:99:233,0,147
3    125856916    rs6799991    A    G    262.18    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.348;QD=26.22;ReadPosRankSum=-1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273450    GT:AD:DP:GQ:PL    0/1:1,9:10:15.92:292,0,16
3    125874388    rs2276731    C    T    293    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460368    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:326,27,0
3    126070673    rs62265917    G    A    354.16    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=2.669;DB;DP=19;Dels=0.0;FS=14.236;HRun=0;HaplotypeScore=1.4538;MQ=58.78;MQ0=0;MQRankSum=-1.264;QD=18.64;ReadPosRankSum=0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509675    GT:AD:DP:GQ:PL    0/1:7,12:19:99:384,0,157
3    126132802    rs77867713    AG    A    1740.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=5;HaplotypeScore=143.9277;IndelType=D;MQ=60.13;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352312    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1782,159,0
3    126133239    rs6775131    C    T    162.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510833    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
3    126137078    rs7634065    G    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510833    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    126138778    rs2271630    T    C    614.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503905    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:648,48,0
3    126142496    rs13064828    T    C    707.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503905    GT:AD:DP:GQ:PL    1/1:0,26:26:54.18:740,54,0
3    126151797    rs35133442    T    C    278.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389709    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:311,24,0
3    126153361    rs13099144    T    C    71.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389709    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
3    126154634    rs3817526    G    A    176.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389709    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
3    126160529    rs4679244    A    G    382.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=22.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389709    GT:AD:DP:GQ:PL    1/1:0,17:17:36.09:415,36,0
3    126178390    rs1043803    A    C    3184.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336332    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3218,250,0
3    126184941    rs1799389    C    T    304.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336332    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:337,27,0
3    126185238    rs1687463    C    T    675.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336332    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:708,54,0
3    126189919    rs777499    A    G    343.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336332    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:377,27,0
3    126194076    rs812367    T    C    186.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.7;SNPEFF_AMINO_ACID_CHANGE=P211;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126193802_126194708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336332    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:219,18,0
3    126194357    rs7624748    G    C    218.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.27;SNPEFF_AMINO_ACID_CHANGE=P118A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126193802_126194708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZXDC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336332    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:251,21,0
3    126207222    rs777483    A    G    437.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:470,36,0
3    126208249    rs777479    A    C    1065.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1098,87,0
3    126218167    rs1168595    G    A    73.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.835;DB;DP=15;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=1.239;QD=4.88;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    0/1:8,6:15:99:103,0,142
3    126219973    rs1177565    T    C    4026.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DB;DP=120;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.62;MQ0=0;MQRankSum=-0.073;QD=33.55;ReadPosRankSum=-1.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    1/1:1,119:120:99:4026,276,0
3    126220539    rs9844797    A    G    148.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=12.39;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    0/1:6,6:12:99:179,0,209
3    126220845    rs7643584    G    A    59.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=6.59;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    0/1:6,3:9:89.34:89,0,223
3    126220853    rs77943998    C    T    77.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.95;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    0/1:3,3:6:88.58:108,0,89
3    126222856    rs139894266    C    T    881.56    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=67;Dels=0.0;FS=2.348;HRun=0;HaplotypeScore=2.3548;MQ=58.96;MQ0=0;MQRankSum=1.427;QD=13.16;ReadPosRankSum=-0.347;SNPEFF_AMINO_ACID_CHANGE=R295H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126222838_126222926;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    0/1:35,31:67:99:912,0,734
3    126223002    rs72626368    A    G    368.52    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.212;QD=20.47;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    0/1:5,13:18:99:399,0,149
3    126223117    rs114520646    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    126226518    rs9784244    C    T    2004.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    1/1:1,58:60:99:2038,157,0
3    126227185    rs16837531    G    A    73.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.23;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    0/1:4,4:8:99:104,0,105
3    126236348    rs1687480    T    C    302.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UROC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290868    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:336,24,0
3    126261345    rs1056522    G    A    99.40    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-1.92;QD=12.42;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=R317Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126260576_126262134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319340    GT:AD:DP:GQ:PL    0/1:3,5:8:84.62:129,0,85
3    126268918    rs869463    G    A    59.64    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.849;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.109;QD=4.97;ReadPosRankSum=1.294;SNPEFF_AMINO_ACID_CHANGE=L73;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126268516_126268921;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318225    GT:AD:DP:GQ:PL    0/1:9,3:12:89.64:90,0,312
3    126268953    rs869464    T    G    141.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.47;QD=14.14;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318225    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,179
3    126270735    rs2291509    G    A    293.28    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=15;Dels=0.0;FS=2.622;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.326;QD=19.55;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318225    GT:AD:DP:GQ:PL    0/1:4,11:15:73.13:323,0,73
3    126270757    rs13071443    G    T    498.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318225    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:532,39,0
3    126329910    rs777241    A    G    1282.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=27.87;SNPEFF_AMINO_ACID_CHANGE=Y567;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126329880_126329975;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TXNRD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523403    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1315,99,0
3    126340553    rs3732534    G    A    1126.41    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=4.106;DB;DP=75;Dels=0.0;FS=3.779;HRun=1;HaplotypeScore=0.9933;MQ=59.69;MQ0=0;MQRankSum=-1.934;QD=15.02;ReadPosRankSum=0.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TXNRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523403    GT:AD:DP:GQ:PL    0/1:37,38:75:99:1156,0,1085
3    126349457    rs777224    A    G    310.77    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.858;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.315;QD=11.51;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TXNRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523403    GT:AD:DP:GQ:PL    0/1:14,13:27:99:341,0,466
3    126350531    rs777226    C    T    658.18    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.234;DB;DP=37;Dels=0.0;FS=6.899;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.686;QD=17.79;ReadPosRankSum=0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TXNRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523403    GT:AD:DP:GQ:PL    0/1:17,20:37:99:688,0,550
3    126363438    rs777234    C    T    400.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TXNRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523403    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:434,33,0
3    126365127    rs11453652    C    CT    870.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=35.3862;IndelType=I;MQ=60.0;MQ0=0;QD=45.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TXNRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523403    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:912,57,0
3    126633419    rs2303994    C    G    565.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290913    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:599,51,0
3    126682205    rs5852500    C    CA    1292.70    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.259;DB;DP=72;FS=1.193;HRun=0;HaplotypeScore=180.2869;IndelType=I;MQ=60.02;MQ0=0;MQRankSum=1.659;QD=17.95;ReadPosRankSum=0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290913    GT:AD:DP:GQ:PL    0/1:38,33:72:99:1332,0,1332
3    126682424    rs114542493    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290913    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    126708453    rs6773789    T    C    923.54    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=64;Dels=0.0;FS=2.065;HRun=1;HaplotypeScore=0.8667;MQ=59.35;MQ0=0;MQRankSum=0.363;QD=14.43;ReadPosRankSum=-0.027;SNPEFF_AMINO_ACID_CHANGE=T316;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126707437_126708630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:33,31:64:99:954,0,1040
3    126708459    rs61746811    C    T    995.33    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.788;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8401;MQ=59.36;MQ0=0;MQRankSum=0.361;QD=15.31;ReadPosRankSum=-0.256;SNPEFF_AMINO_ACID_CHANGE=F318;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126707437_126708630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:32,33:65:99:1025,0,943
3    126722304    rs41266467    C    T    321.31    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=22;Dels=0.0;FS=1.719;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.32;QD=14.6;ReadPosRankSum=-1.173;SNPEFF_AMINO_ACID_CHANGE=T480;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126722173_126722313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:10,12:22:99:351,0,254
3    126724881    rs12489348    G    C    719.92    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=55;Dels=0.0;FS=1.183;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=1.631;QD=13.09;ReadPosRankSum=0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:29,26:55:99:750,0,907
3    126725175    rs78745973    G    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:2,2:4:66.99:71,0,67
3    126732776    .    T    C    500.68    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.069;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6828;MQ=59.34;MQ0=0;MQRankSum=0.689;QD=14.31;ReadPosRankSum=0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:18,17:35:99:531,0,556
3    126736821    rs80135946    C    T    52.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=5.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:5,4:9:82.69:83,0,181
3    126737268    rs4679323    C    A    324.70    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=24;Dels=0.0;FS=4.216;HRun=1;HaplotypeScore=0.8321;MQ=58.05;MQ0=0;MQRankSum=0.966;QD=13.53;ReadPosRankSum=-1.259;SNPEFF_AMINO_ACID_CHANGE=L1241;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_126737137_126737371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:10,14:24:99:355,0,304
3    126739012    rs891762    G    T    329.09    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.609;DB;DP=32;Dels=0.0;FS=3.304;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.384;QD=10.28;ReadPosRankSum=-0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:19,13:32:99:359,0,609
3    126739291    rs6439030    T    C    66.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:98,9,0
3    126741674    rs60819734    G    A    841.46    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=56;Dels=0.0;FS=13.922;HRun=0;HaplotypeScore=1.8928;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=15.03;ReadPosRankSum=0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:26,29:56:99:871,0,755
3    126741740    rs41266471    T    C    201.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.601;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=7.76;ReadPosRankSum=-1.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:15,10:26:99:232,0,491
3    126746690    rs9851451    A    G    51.92    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=7.42;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:4,3:7:81.92:82,0,146
3    126746731    rs9833827    T    G    95.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-0.796;QD=6.36;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:10,5:15:99:125,0,329
3    126747367    rs9838548    T    C    37.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.59;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:68,0,32
3    126748151    rs6789728    T    C    153.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251772    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
3    126751689    rs6439031    G    A    940.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503363    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:974,75,0
3    126916371    rs4679347    T    C    85.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.88;MQ0=0;QD=21.43;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398112    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
3    127323830    rs893293    C    T    1483.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=37.09;SNPEFF_AMINO_ACID_CHANGE=I149;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_127323739_127323999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543142    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1516,117,0
3    127334598    rs17497118    G    A    122.42    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=9.42;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265056    GT:AD:DP:GQ:PL    0/1:5,8:13:99:152,0,167
3    127336934    rs782427    A    G    543.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=30.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473785    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:576,42,0
3    127337742    rs17497159    G    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473785    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:71,0,70
3    127390525    rs41266485    C    T    204.25    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.993;QD=13.62;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PODXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302192    GT:AD:DP:GQ:PL    0/1:7,8:15:99:234,0,209
3    127394820    rs35703629    C    T    205.72    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=17;Dels=0.0;FS=1.957;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.914;QD=12.1;ReadPosRankSum=0.048;SNPEFF_AMINO_ACID_CHANGE=R34;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_127394813_127394903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABTB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361019    GT:AD:DP:GQ:PL    0/1:8,9:17:99:236,0,220
3    127396220    rs1658037    T    C    629.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABTB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466612    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:663,51,0
3    127411064    rs138910107    C    T    715.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.643;DB;DP=40;Dels=0.0;FS=3.009;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;MQRankSum=0.262;QD=17.88;ReadPosRankSum=-0.732;SNPEFF_AMINO_ACID_CHANGE=A149T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_127410960_127411166;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGLL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000487473    GT:AD:DP:GQ:PL    0/1:16,24:40:99:745,0,423
3    127980995    rs61740550    C    T    982.96    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.334;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.078;QD=13.47;ReadPosRankSum=2.07;SNPEFF_AMINO_ACID_CHANGE=P183;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_127980971_127981067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEFSEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254730    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1013,0,878
3    127983495    rs2811544    T    C    2561.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_AMINO_ACID_CHANGE=D219;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_127983460_127983624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEFSEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254730    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2595,193,0
3    127983796    rs2811543    T    G    93.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEFSEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254730    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:126,9,0
3    127983800    rs2811542    A    C    92.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEFSEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254730    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
3    128181777    rs2659690    A    G    491.67    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.029;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;MQRankSum=-1.67;QD=11.99;ReadPosRankSum=0.262;SNPEFF_AMINO_ACID_CHANGE=F104;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_128181285_128182953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319153    GT:AD:DP:GQ:PL    0/1:17,24:41:99:522,0,529
3    128292060    rs2734045    G    A    558.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9647;MQ=50.65;MQ0=0;QD=34.9;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356020    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:591,48,0
3    128292213    rs2734046    A    G    1244.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.94;MQ0=0;QD=30.34;SNPEFF_AMINO_ACID_CHANGE=S120;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_128290843_128293146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356020    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1277,105,0
3    128340896    rs2712419    T    C    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.63;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490166    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:69,0,69
3    128341475    rs6414311    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490166    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    128344786    rs1126828    G    A    531.97    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.431;DB;DP=34;Dels=0.0;FS=7.749;HRun=0;HaplotypeScore=1.8295;MQ=58.63;MQ0=0;MQRankSum=-0.121;QD=15.65;ReadPosRankSum=-0.19;SNPEFF_AMINO_ACID_CHANGE=D173;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_128344717_128344855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537139    GT:AD:DP:GQ:PL    0/1:16,18:34:99:562,0,495
3    128348735    rs11453536    G    GA    238.93    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=34.0573;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=14.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495462    GT:AD:DP:GQ:PL    0/1:7,9:16:99:278,0,154
3    128356852    rs1697    C    T    405.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.879;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.32;QD=11.59;ReadPosRankSum=0.522;SNPEFF_AMINO_ACID_CHANGE=P115;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_128356642_128356948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545956    GT:AD:DP:GQ:PL    0/1:21,14:35:99:436,0,666
3    128598367    rs183973851    T    C    335.77    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.608;QD=16.79;ReadPosRankSum=0.152;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACAD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308982    GT:AD:DP:GQ:PL    0/1:9,11:20:99:366,0,232
3    128598469    rs62783861    CGT    C    566.09    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=5.06;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=164.2985;IndelType=D;MQ=60.22;MQ0=0;MQRankSum=-0.211;QD=11.55;ReadPosRankSum=0.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACAD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505602    GT:AD:DP:GQ:PL    0/1:30,19:49:99:605,0,1347
3    128614133    rs1683791    C    T    171.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.299;QD=12.25;ReadPosRankSum=0.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACAD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515429    GT:AD:DP:GQ:PL    0/1:7,7:14:99:202,0,246
3    128614185    rs1680778    A    C    135.70    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.421;QD=7.54;ReadPosRankSum=-0.983;SNPEFF_AMINO_ACID_CHANGE=R127;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_128614153_128614259;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACAD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308982    GT:AD:DP:GQ:PL    0/1:12,6:18:99:166,0,369
3    128616359    rs789213    C    G    42.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.55;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACAD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514336    GT:AD:DP:GQ:PL    0/1:2,2:4:68.40:72,0,68
3    128624880    rs1683777    T    G    115.07    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.183;DB;DP=18;Dels=0.0;FS=5.563;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.197;QD=6.39;ReadPosRankSum=0.789;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511438    GT:AD:DP:GQ:PL    0/1:13,5:18:99:145,0,373
3    128626952    rs1683786    T    C    727.50    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.524;DB;DP=57;Dels=0.0;FS=3.37;HRun=1;HaplotypeScore=1.7334;MQ=60.0;MQ0=0;MQRankSum=-0.902;QD=12.76;ReadPosRankSum=-1.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511438    GT:AD:DP:GQ:PL    0/1:28,29:57:99:757,0,948
3    128627021    rs1683787    A    G    1492.92    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=114;Dels=0.0;FS=6.177;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=13.1;ReadPosRankSum=-0.959;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511438    GT:AD:DP:GQ:PL    0/1:62,51:114:99:1523,0,1710
3    128627753    rs876754    T    C    148.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=12.34;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACAD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505192    GT:AD:DP:GQ:PL    0/1:6,6:12:99:178,0,178
3    128627933    rs876755    C    T    169.21    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=8.91;ReadPosRankSum=-0.784;SNPEFF_AMINO_ACID_CHANGE=P359;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_128627816_128627942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACAD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334167    GT:AD:DP:GQ:PL    0/1:11,8:19:99:199,0,351
3    128629505    rs71618173    C    CTGAT    1676.38    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.709;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=140.259;IndelType=I;MQ=54.56;MQ0=0;MQRankSum=-1.926;QD=44.12;ReadPosRankSum=-0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACAD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505192    GT:AD:DP:GQ:PL    0/1:20,17:38:99:1715,0,673
3    128651536    rs1683817    G    A    258.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.222;QD=18.46;ReadPosRankSum=0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511438    GT:AD:DP:GQ:PL    0/1:6,8:14:99:288,0,134
3    128653952    rs883602    A    G    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511438    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
3    128755814    rs3732429    T    C    521.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=-0.248;QD=11.85;ReadPosRankSum=-0.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436022    GT:AD:DP:GQ:PL    0/1:22,22:44:99:551,0,558
3    128755953    rs3732430    G    A    88.67    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.979;QD=5.54;ReadPosRankSum=0.326;SNPEFF_AMINO_ACID_CHANGE=R528Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_128755820_128755960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000480450    GT:AD:DP:GQ:PL    0/1:12,4:16:99:119,0,290
3    128755971    rs3732431    G    A    65.97    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=4.71;ReadPosRankSum=-1.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436022    GT:AD:DP:GQ:PL    0/1:9,5:14:95.96:96,0,242
3    128757560    rs2306529    C    G    667.79    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=19.08;ReadPosRankSum=0.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436022    GT:AD:DP:GQ:PL    0/1:12,22:35:99:698,0,320
3    128840034    rs9865992    T    C    112.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=28.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418265    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:145,12,0
3    128853622    rs7646403    C    G    974.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.25;MQ0=0;QD=31.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273541    GT:AD:DP:GQ:PL    1/1:0,31:31:75.23:1008,75,0
3    128853962    rs12630170    C    T    124.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273541    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
3    128859202    rs10664499    C    CTTAG    5761.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=0;HaplotypeScore=234.4091;IndelType=I;MQ=58.3;MQ0=0;QD=73.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273541    GT:AD:DP:GQ:PL    1/1:5,70:78:99:5762,220,0
3    128864520    rs9842978    C    G    586.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273541    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:619,48,0
3    128864540    rs9880527    A    G    1077.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273541    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1111,87,0
3    128877521    rs4452346    C    T    1141.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273541    GT:AD:DP:GQ:PL    1/1:0,31:31:90.26:1174,90,0
3    128890350    rs4303883    G    A    2264.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=D35;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_128890289_128890351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000500450    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2297,169,0
3    128979008    rs4927943    C    T    206.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.406;QD=14.74;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314797    GT:AD:DP:GQ:PL    0/1:7,7:14:99:236,0,252
3    128979779    rs141655727    A    G    35.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=5.07;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314797    GT:AD:DP:GQ:PL    0/1:4,3:7:65.46:65,0,150
3    129020778    rs6765930    A    G    2750.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3548;MQ=59.72;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383463    GT:AD:DP:GQ:PL    1/1:0,80:81:99:2783,214,0
3    129041882    rs6790635    T    C    793.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-685P2.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506964    GT:AD:DP:GQ:PL    1/1:0,26:26:63.19:826,63,0
3    129044006    rs10934882    T    C    455.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-685P2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433902    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:489,36,0
3    129152144    rs140695    T    C    218.18    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.297;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=59.34;MQ0=0;MQRankSum=0.468;QD=6.23;ReadPosRankSum=1.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505883    GT:AD:DP:GQ:PL    0/1:24,11:35:99:248,0,655
3    129185661    rs6805886    C    A    688.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT122;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514081    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:722,57,0
3    129278760    rs147328612    C    T    35    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9545;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=5.0;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503166    GT:AD:DP:GQ:PL    0/1:5,2:7:64.99:65,0,84
3    129279597    rs2713627    C    T    1116.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503166    GT:AD:DP:GQ:PL    1/1:0,36:36:84.25:1150,84,0
3    129281458    rs2811469    G    A    78.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503166    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
3    129281866    rs2713626    G    C    169.93    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.556;DB;DP=15;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=11.33;ReadPosRankSum=-1.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503166    GT:AD:DP:GQ:PL    0/1:7,8:15:99:200,0,258
3    129281980    rs2713625    C    T    386.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_AMINO_ACID_CHANGE=S1542N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129281937_129282083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    1/1:0,16:16:30.10:420,30,0
3    129284415    rs2625972    G    T    106.33    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;Dels=0.0;FS=3.802;HRun=2;HaplotypeScore=0.9999;MQ=58.05;MQ0=0;MQRankSum=0.135;QD=8.86;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514990    GT:AD:DP:GQ:PL    0/1:7,5:12:99:136,0,247
3    129284637    rs2245469    A    G    56.13    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=5.1;ReadPosRankSum=-1.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504767    GT:AD:DP:GQ:PL    0/1:8,3:11:86.12:86,0,286
3    129284818    rs2625973    A    C    283.75    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.308;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.215;QD=11.82;ReadPosRankSum=3.047;SNPEFF_AMINO_ACID_CHANGE=L1412V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129284730_129284860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    0/1:13,11:24:99:314,0,348
3    129286413    rs2245285    G    C    287.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=19.19;ReadPosRankSum=0.429;SNPEFF_AMINO_ACID_CHANGE=L1336;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129286335_129286447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    0/1:5,10:15:99:318,0,126
3    129286531    rs2245281    C    A    584.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.743;DB;DP=28;Dels=0.0;FS=1.895;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.955;QD=20.88;ReadPosRankSum=0.955;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504767    GT:AD:DP:GQ:PL    0/1:7,21:28:99:615,0,174
3    129286635    rs2245278    G    A    688.70    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.023;DB;DP=30;Dels=0.0;FS=1.661;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=2.181;QD=22.96;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=F1293;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129286541_129286648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    0/1:8,22:30:99:719,0,212
3    129289831    rs2244962    A    G    2100.82    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.388;DB;DP=156;DS;Dels=0.0;FS=4.466;HRun=1;HaplotypeScore=1.933;MQ=59.14;MQ0=0;MQRankSum=0.39;QD=13.47;ReadPosRankSum=-0.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505505    GT:AD:DP:GQ:PL    0/1:83,71:156:99:2131,0,2674
3    129290187    rs2285367    T    C    139.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.47;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505505    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,130
3    129291751    rs2244708    T    C    263.46    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.412;DB;DP=21;Dels=0.0;FS=1.719;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.905;QD=12.55;ReadPosRankSum=0.616;SNPEFF_AMINO_ACID_CHANGE=P957;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129291685_129291784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    0/1:8,13:21:99:293,0,223
3    129293183    rs2625962    T    C    159.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_AMINO_ACID_CHANGE=H894R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129293179_129293333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
3    129293256    rs2255703    T    C    102.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=17.14;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=M870V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129293179_129293333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    0/1:2,4:6:63.82:133,0,64
3    129297012    rs1872112    G    C    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    129297223    rs1110168    C    G    182.58    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=11;Dels=0.0;FS=2.73;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=16.6;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=T765;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129297172_129297276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    0/1:3,8:11:55.95:213,0,56
3    129303197    rs2811463    T    C    685.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.61;MQ0=0;QD=36.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505237    GT:AD:DP:GQ:PL    1/1:0,19:19:57.15:719,57,0
3    129303436    rs2811462    T    G    218.42    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=19;Dels=0.0;FS=6.99;HRun=5;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.998;QD=11.5;ReadPosRankSum=1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505237    GT:AD:DP:GQ:PL    0/1:10,9:19:99:248,0,203
3    129308096    rs13079843    G    A    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.36;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:71,0,67
3    129324193    rs7619850    A    G    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_AMINO_ACID_CHANGE=C430;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129324172_129325661;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324093    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
3    129390129    rs6769406    C    G    296.91    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=22.84;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329333    GT:AD:DP:GQ:PL    0/1:4,9:13:99:327,0,122
3    129546664    rs72987361    C    T    757.64    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=58;Dels=0.0;FS=1.124;HRun=1;HaplotypeScore=1.9367;MQ=59.28;MQ0=0;MQRankSum=0.55;QD=13.06;ReadPosRankSum=0.353;SNPEFF_AMINO_ACID_CHANGE=E186;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129546646_129547351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393238    GT:AD:DP:GQ:PL    0/1:30,28:58:99:788,0,853
3    129546729    rs784689    T    C    905.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=29.21;SNPEFF_AMINO_ACID_CHANGE=S165G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129546646_129547351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393238    GT:AD:DP:GQ:PL    1/1:0,31:31:81.20:939,81,0
3    129694934    rs784705    C    A    256.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302649    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
3    129695373    rs7645772    T    C    154.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.33;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302649    GT:AD:DP:GQ:PL    0/1:3,5:8:99:185,0,99
3    129695440    rs13097335    G    T    242.28    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.79;DB;DP=24;Dels=0.0;FS=1.77;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=10.1;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302649    GT:AD:DP:GQ:PL    0/1:14,10:24:99:272,0,472
3    129695538    rs784704    C    T    1945.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302649    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1979,150,0
3    129695954    rs5662    T    C    897.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.04;SNPEFF_AMINO_ACID_CHANGE=L204;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129695542_129696778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507066    GT:AD:DP:GQ:PL    1/1:0,28:28:72.22:930,72,0
3    129696041    rs5663    A    G    614.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.14;SNPEFF_AMINO_ACID_CHANGE=R233;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_129695542_129696778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507066    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:647,51,0
3    129740598    rs2953780    C    T    2935.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=46.98;MQ0=0;QD=32.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-93K22.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504655    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2968,235,0
3    129740831    rs2976153    T    A    2970.51    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DB;DP=127;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9717;MQ=39.85;MQ0=8;MQRankSum=-0.558;QD=23.39;ReadPosRankSum=1.321;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-93K22.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504655    GT:AD:DP:GQ:PL    1/1:2,125:127:99:3004,225,0
3    129743111    rs2953776    T    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=23.28;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-93K22.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504655    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    129743354    rs2976150    A    G    86.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.61;MQ0=0;QD=12.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-93K22.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504655    GT:AD:DP:GQ:PL    1/1:0,7:7:12.02:119,12,0
3    129810022    rs6779417    A    G    157.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-93K22.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425059    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:190,18,0
3    129810128    rs6804080    G    A    280.44    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=1.596;DB;DP=30;Dels=0.0;FS=5.636;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.697;QD=9.35;ReadPosRankSum=0.022;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-93K22.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425059    GT:AD:DP:GQ:PL    0/1:19,11:30:99:310,0,472
3    129810158    rs6803922    C    T    345.76    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.061;DB;DP=31;Dels=0.0;FS=3.448;HRun=0;HaplotypeScore=0.8321;MQ=59.06;MQ0=0;MQRankSum=1.683;QD=11.15;ReadPosRankSum=0.791;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-93K22.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425059    GT:AD:DP:GQ:PL    0/1:19,12:31:99:376,0,610
3    129810234    rs12495049    C    T    205.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=20;Dels=0.0;FS=1.808;HRun=1;HaplotypeScore=0.0;MQ=58.23;MQ0=0;MQRankSum=-0.289;QD=10.26;ReadPosRankSum=0.206;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-93K22.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425059    GT:AD:DP:GQ:PL    0/1:12,8:20:99:235,0,304
3    129817888    rs183706721    T    C    171.31    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.7;MQ0=0;MQRankSum=-0.742;QD=24.47;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:1,6:7:19.58:201,0,20
3    129818152    rs56848274    CA    C    2470.74    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=8.266;DB;DP=151;FS=2.879;HRun=3;HaplotypeScore=384.0956;IndelType=D;MQ=58.14;MQ0=1;MQRankSum=0.279;QD=16.25;ReadPosRankSum=-0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:80,72:151:99:2510,0,3307
3    129818389    rs56235703    A    G    258.48    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=19.88;ReadPosRankSum=-0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:5,8:13:99:288,0,163
3    129818509    rs56039375    A    G    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:73,0,28
3    129821650    rs56088005    G    A    1657.87    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.614;DB;DP=109;Dels=0.0;FS=0.731;HRun=0;HaplotypeScore=3.3393;MQ=59.39;MQ0=0;MQRankSum=1.665;QD=15.21;ReadPosRankSum=-0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-93K22.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425059    GT:AD:DP:GQ:PL    0/1:53,56:109:99:1688,0,1481
3    129821816    rs75177871    C    G    1000.28    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=0.339;DB;DP=53;Dels=0.0;FS=1.565;HRun=0;HaplotypeScore=0.0;MQ=55.03;MQ0=0;MQRankSum=1.459;QD=18.87;ReadPosRankSum=-1.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-93K22.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425059    GT:AD:DP:GQ:PL    0/1:20,33:53:99:1030,0,601
3    129822441    rs6808888    C    A    38.66    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=40.57;MQ0=1;MQRankSum=-1.754;QD=4.83;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:3,5:8:68.65:69,0,108
3    129822492    rs9713340    G    A    238.61    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.586;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=48.62;MQ0=1;MQRankSum=-3.098;QD=8.52;ReadPosRankSum=1.244;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:15,13:28:99:269,0,401
3    129822494    rs9713334    C    T    234.98    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.147;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=48.62;MQ0=1;MQRankSum=-3.001;QD=8.39;ReadPosRankSum=1.391;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:15,13:28:99:265,0,478
3    129822552    rs9713344    G    A    569.26    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=4.128;DB;DP=49;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.0;MQ=46.38;MQ0=0;MQRankSum=-2.08;QD=11.62;ReadPosRankSum=0.176;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:27,22:49:99:599,0,648
3    129822616    rs78806708    G    C    475.90    MQFilter40    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DB;DP=65;Dels=0.0;FS=5.732;HRun=0;HaplotypeScore=2.3548;MQ=36.67;MQ0=3;MQRankSum=-1.491;QD=7.32;ReadPosRankSum=-1.177;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:37,28:65:99:506,0,1022
3    129822634    rs9713346    G    A    652.34    MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DB;DP=73;Dels=0.0;FS=3.655;HRun=0;HaplotypeScore=2.3548;MQ=34.19;MQ0=3;MQRankSum=-0.993;QD=8.94;ReadPosRankSum=0.662;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:40,33:73:99:682,0,968
3    129822639    rs2624639    A    G    1860.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2829;MQ=32.15;MQ0=5;QD=24.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    1/1:0,75:75:99:1894,162,0
3    129822950    rs12495527    A    G    1133.20    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.369;DB;DP=84;Dels=0.0;FS=1.769;HRun=2;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=-1.205;QD=13.49;ReadPosRankSum=-0.309;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:40,44:84:99:1163,0,1304
3    129825955    rs7432233    A    G    406.02    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.341;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.3;MQ0=0;MQRankSum=-0.279;QD=16.92;ReadPosRankSum=-0.279;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:10,14:24:99:436,0,289
3    129826002    rs7428346    G    T    485.42    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=4.798;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=57.85;MQ0=0;MQRankSum=0.242;QD=8.83;ReadPosRankSum=1.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:37,18:55:99:515,0,1068
3    129826031    rs7428327    C    T    688.75    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.897;DB;DP=77;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=0.0;MQ=56.47;MQ0=0;MQRankSum=1.819;QD=8.94;ReadPosRankSum=-1.853;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:50,27:77:99:719,0,1561
3    129826100    rs7428344    C    T    1141.46    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DB;DP=115;Dels=0.0;FS=0.722;HRun=0;HaplotypeScore=1.9075;MQ=54.47;MQ0=2;MQRankSum=0.438;QD=9.93;ReadPosRankSum=-0.724;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:71,44:115:99:1171,0,2027
3    129826344    rs112319225    T    G    79.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.58;MQ0=0;QD=26.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
3    129827764    rs2587973    A    G    75.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.16;MQ0=0;QD=25.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
3    129827901    rs73210763    A    G    273.26    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.293;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.13;MQ0=0;MQRankSum=-0.831;QD=11.88;ReadPosRankSum=-0.831;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500074    GT:AD:DP:GQ:PL    0/1:11,12:23:99:303,0,399
3    129902395    rs2624583    G    A    1600.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.78;MQ0=6;QD=28.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC130888.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408343    GT:AD:DP:GQ:PL    1/1:3,54:57:99:1634,138,0
3    129902475    rs2588009    A    G    1623.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8237;MQ=46.28;MQ0=3;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC130888.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408343    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1656,132,0
3    129902663    rs2588010    T    A    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC130888.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408343    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    130159934    rs7629719    G    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265379    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    130162395    rs9883988    A    G    3339.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;QD=31.21;SNPEFF_AMINO_ACID_CHANGE=Q131R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_130162320_130162410;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL6A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373157    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3340,265,0
3    130174334    rs819085    G    A    3077.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_AMINO_ACID_CHANGE=G148D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_130174299_130174510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL6A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373157    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3111,232,0
3    130187817    rs322113    T    C    4125.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=I158;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_130187639_130188325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL6A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512482    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4126,322,0
3    130189918    rs10668406    T    TTG    213.34    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=53.3799;IndelType=I;MQ=55.52;MQ0=0;MQRankSum=2.054;QD=13.33;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265379    GT:AD:DP:GQ:PL    0/1:10,6:16:48.78:252,0,49
3    130190026    rs322115    T    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265379    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    130190056    rs191217    G    A    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265379    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    130284284    rs9830253    G    A    4054.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.67;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;MQRankSum=1.257;QD=32.7;ReadPosRankSum=-0.95;SNPEFF_AMINO_ACID_CHANGE=A370T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_130283838_130284458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    1/1:1,123:124:99:4055,278,0
3    130286886    rs9836961    T    C    2138.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2172,160,0
3    130289617    rs10934949    T    C    2286.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.28;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    1/1:0,63:64:99:2319,178,0
3    130300650    rs6439249    T    C    7676.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=223;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9774;MQ=59.69;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=L1265;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_130300405_130300748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    1/1:0,223:223:99:7676,587,0
3    130313017    rs1467015    T    G    387.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:421,33,0
3    130317341    rs4336088    G    A    157.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    1/1:0,7:7:15.02:191,15,0
3    130327973    rs56768629    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
3    130368069    rs7614116    A    G    315.49    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.902;DB;DP=29;Dels=0.0;FS=3.891;HRun=0;HaplotypeScore=1.7046;MQ=59.2;MQ0=0;MQRankSum=0.184;QD=10.88;ReadPosRankSum=1.29;SNPEFF_AMINO_ACID_CHANGE=H1799R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_130367913_130368406;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    0/1:16,13:29:99:345,0,478
3    130383973    rs59386806    G    A    1022.80    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.045;DB;DP=66;Dels=0.0;FS=15.155;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.577;QD=15.5;ReadPosRankSum=1.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358511    GT:AD:DP:GQ:PL    0/1:28,38:66:99:1053,0,877
3    130393973    rs7635293    T    A    347.48    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.139;QD=15.11;ReadPosRankSum=1.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356763    GT:AD:DP:GQ:PL    0/1:12,11:23:99:377,0,419
3    130422409    rs74909067    C    G    113.54    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=16.22;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508273    GT:AD:DP:GQ:PL    0/1:3,4:7:94.89:144,0,95
3    130424390    rs75791598    C    A    991.93    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.261;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=-0.029;QD=13.97;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508273    GT:AD:DP:GQ:PL    0/1:36,35:71:99:1022,0,1133
3    130424393    rs7652761    C    T    1036.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.482;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=-0.81;QD=14.6;ReadPosRankSum=-0.446;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508273    GT:AD:DP:GQ:PL    0/1:35,35:71:99:1066,0,1109
3    130447530    rs5852606    T    TA    166.24    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=39;FS=0.0;HRun=16;HaplotypeScore=265.3947;IndelType=I;MQ=53.08;MQ0=0;MQRankSum=-0.38;QD=4.26;ReadPosRankSum=-1.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356763    GT:AD:DP:GQ:PL    0/1:18,15:39:30.45:205,0,30
3    130449222    rs2170990    A    G    934.11    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=3.108;DB;DP=68;Dels=0.0;FS=10.739;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.498;QD=13.74;ReadPosRankSum=-1.343;SNPEFF_AMINO_ACID_CHANGE=L505;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_130449152_130449286;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356763    GT:AD:DP:GQ:PL    0/1:38,30:68:99:964,0,1282
3    130454884    rs111464199    T    TA    891.87    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.132;DB;DP=48;FS=0.0;HRun=6;HaplotypeScore=102.1489;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=-0.014;QD=18.58;ReadPosRankSum=-1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356763    GT:AD:DP:GQ:PL    0/1:20,28:48:99:931,0,275
3    130648798    rs712984    A    G    657.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.376;DB;DP=50;Dels=0.0;FS=2.838;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.136;QD=13.14;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328560    GT:AD:DP:GQ:PL    0/1:25,25:50:99:687,0,847
3    130648906    rs861171    G    A    381.39    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=23.84;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328560    GT:AD:DP:GQ:PL    0/1:5,11:16:99:411,0,158
3    130659650    rs73201921    A    T    98.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=9.85;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505072    GT:AD:DP:GQ:PL    0/1:5,5:10:99:129,0,165
3    130674022    rs218494    A    G    36.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.3;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328560    GT:AD:DP:GQ:PL    0/1:3,2:5:66.50:66,0,109
3    130685846    rs218497    A    T    152.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.13;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=10.92;ReadPosRankSum=1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328560    GT:AD:DP:GQ:PL    0/1:8,6:14:99:183,0,276
3    130734887    rs34645149    G    GT    268.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.0;DB;DP=24;FS=0.0;HRun=11;HaplotypeScore=55.2867;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=1.564;QD=11.2;ReadPosRankSum=0.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504964    GT:AD:DP:GQ:PL    0/1:12,12:24:99:308,0,101
3    130737632    rs218503    A    G    69.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=7.67;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328560    GT:AD:DP:GQ:PL    0/1:6,3:9:99:99,0,211
3    130748733    rs9864242    A    G    576.51    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=43;Dels=0.0;FS=1.379;HRun=0;HaplotypeScore=0.9832;MQ=59.03;MQ0=0;MQRankSum=-0.329;QD=13.41;ReadPosRankSum=-0.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507967    GT:AD:DP:GQ:PL    0/1:20,23:43:99:607,0,670
3    130828790    rs9850655    G    A    723.89    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.427;DB;DP=53;Dels=0.0;FS=5.032;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.971;QD=13.66;ReadPosRankSum=-0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356918    GT:AD:DP:GQ:PL    0/1:26,27:53:99:754,0,930
3    130874017    rs1400012    T    C    132.87    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.08;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426022    GT:AD:DP:GQ:PL    0/1:6,5:11:99:163,0,211
3    130881409    rs1913898    T    C    839.11    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=74;Dels=0.0;FS=4.6;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.73;QD=11.34;ReadPosRankSum=-0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356918    GT:AD:DP:GQ:PL    0/1:46,28:74:99:869,0,1467
3    130884418    rs959073    A    T    160.83    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=14.62;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515636    GT:AD:DP:GQ:PL    0/1:5,6:11:99:191,0,173
3    130947435    rs3738000    A    T    1895.82    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.555;DB;DP=115;Dels=0.0;FS=7.24;HRun=0;HaplotypeScore=1.9612;MQ=59.56;MQ0=0;MQRankSum=-0.554;QD=16.49;ReadPosRankSum=-0.705;SNPEFF_AMINO_ACID_CHANGE=E304V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_130947372_130947532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412440    GT:AD:DP:GQ:PL    0/1:52,63:115:99:1926,0,1592
3    131245496    rs9839353    A    C    134.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.866;QD=13.42;ReadPosRankSum=-0.365;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-517B11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508390    GT:AD:DP:GQ:PL    0/1:4,6:10:99:164,0,138
3    131261662    rs11351082    TG    T    589.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=9;HaplotypeScore=76.4355;IndelType=D;MQ=61.38;MQ0=0;QD=19.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429747    GT:AD:DP:GQ:PL    1/1:8,23:31:69.02:631,69,0
3    131271180    rs994967    T    C    257.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=17.19;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429747    GT:AD:DP:GQ:PL    0/1:6,9:15:99:288,0,187
3    131271439    rs2251178    T    C    140.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=12.75;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429747    GT:AD:DP:GQ:PL    0/1:6,5:11:99:170,0,212
3    131283007    rs6439305    G    A    827.61    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.415;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9363;MQ=59.62;MQ0=0;MQRankSum=-0.585;QD=13.57;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429747    GT:AD:DP:GQ:PL    0/1:33,28:61:99:858,0,904
3    131404572    rs6439314    A    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429747    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    131404826    rs11716477    A    G    637.27    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=31;Dels=0.0;FS=4.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.629;QD=20.56;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429747    GT:AD:DP:GQ:PL    0/1:12,19:31:99:667,0,336
3    131415307    rs11707675    T    C    241.48    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0756;MQ=60.0;MQ0=0;MQRankSum=0.398;QD=10.98;ReadPosRankSum=0.833;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505881    GT:AD:DP:GQ:PL    0/1:13,8:22:99:271,0,459
3    131418719    rs75841703    C    G    385.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.509;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.923;QD=12.06;ReadPosRankSum=0.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429747    GT:AD:DP:GQ:PL    0/1:16,16:32:99:416,0,508
3    131624097    rs3749262    G    A    1574.49    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.427;DB;DP=134;Dels=0.0;FS=2.224;HRun=1;HaplotypeScore=0.9578;MQ=59.34;MQ0=0;MQRankSum=1.133;QD=11.75;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CPNE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429747    GT:AD:DP:GQ:PL    0/1:75,59:134:99:1604,0,2304
3    132063643    rs972775    T    C    199.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.811;QD=15.31;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495911    GT:AD:DP:GQ:PL    0/1:6,7:13:99:229,0,196
3    132063914    rs972774    A    T    267.94    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=15.76;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495911    GT:AD:DP:GQ:PL    0/1:8,9:17:99:298,0,243
3    132063977    rs972773    T    C    105.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=11.77;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495911    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,165
3    132068831    rs2228402    C    T    624.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=45;Dels=0.0;FS=1.192;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=13.88;ReadPosRankSum=0.857;SNPEFF_AMINO_ACID_CHANGE=L250;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_132068764_132068846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000475741    GT:AD:DP:GQ:PL    0/1:20,25:45:99:655,0,567
3    132068876    rs2290542    G    A    510.32    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.152;DB;DP=28;Dels=0.0;FS=3.15;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.566;QD=18.23;ReadPosRankSum=0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336375    GT:AD:DP:GQ:PL    0/1:13,15:28:99:540,0,455
3    132068925    rs2290541    A    T    112.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.378;QD=9.35;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336375    GT:AD:DP:GQ:PL    0/1:6,6:12:99:142,0,204
3    132075359    rs73215936    C    G    201.88    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.87;MQ0=0;MQRankSum=0.597;QD=18.35;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512463    GT:AD:DP:GQ:PL    0/1:4,7:11:99:232,0,125
3    132075417    rs3853148    A    C    632.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.72;MQ0=0;MQRankSum=0.653;QD=17.56;ReadPosRankSum=-2.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512463    GT:AD:DP:GQ:PL    0/1:16,20:36:99:662,0,550
3    132075472    rs7647687    A    T    964.63    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.811;DB;DP=71;Dels=0.0;FS=1.232;HRun=0;HaplotypeScore=0.734;MQ=57.69;MQ0=0;MQRankSum=0.351;QD=13.59;ReadPosRankSum=0.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512463    GT:AD:DP:GQ:PL    0/1:35,36:71:99:995,0,1110
3    132075707    rs2071505    A    G    677.58    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=47;Dels=0.0;FS=1.483;HRun=1;HaplotypeScore=0.8321;MQ=58.51;MQ0=0;MQRankSum=0.299;QD=14.42;ReadPosRankSum=0.211;SNPEFF_AMINO_ACID_CHANGE=E349;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_132075530_132075851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000475741    GT:AD:DP:GQ:PL    0/1:21,26:47:99:708,0,681
3    132075743    rs7625966    G    C    467.88    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.244;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.565;QD=14.18;ReadPosRankSum=-1.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512463    GT:AD:DP:GQ:PL    0/1:14,19:33:99:498,0,470
3    132075746    rs1042330    G    A    444.11    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.792;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=-1.197;QD=13.88;ReadPosRankSum=-2.108;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512463    GT:AD:DP:GQ:PL    0/1:14,18:32:99:474,0,469
3    132075759    rs73215937    T    C    282.57    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.461;QD=10.47;ReadPosRankSum=-0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512463    GT:AD:DP:GQ:PL    0/1:14,13:27:99:313,0,478
3    132086825    rs2198765    G    A    645.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.98;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351273    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:679,51,0
3    132107649    rs2124503    T    C    79.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-65E22.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468439    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:109,0,30
3    132107747    rs10935007    G    A    171.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.583;QD=14.33;ReadPosRankSum=0.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-65E22.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468439    GT:AD:DP:GQ:PL    0/1:6,6:12:99:202,0,177
3    132153612    rs72990500    A    G    64.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.22;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:4,3:7:94.52:95,0,142
3    132165178    rs1979848    A    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    132166266    rs11917172    T    G    293.52    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.028;DB;DP=37;Dels=0.0;FS=6.202;HRun=0;HaplotypeScore=0.9997;MQ=59.38;MQ0=0;MQRankSum=1.736;QD=7.93;ReadPosRankSum=2.06;SNPEFF_AMINO_ACID_CHANGE=T82;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_132166165_132166314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:25,12:37:99:324,0,938
3    132169705    rs72352963    T    TA    83.32    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=74.1187;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=0.779;QD=3.97;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:12,7:21:79.02:122,0,79
3    132186187    rs62292896    G    A    369.05    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=36;Dels=0.0;FS=3.726;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.155;QD=10.25;ReadPosRankSum=-0.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:21,15:36:99:399,0,695
3    132194001    rs11920646    T    A    226.62    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=26;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.734;MQ=59.11;MQ0=0;MQRankSum=0.746;QD=8.72;ReadPosRankSum=-0.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:12,14:26:99:257,0,409
3    132194082    rs11916613    G    T    79.16    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.83;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:109,0,30
3    132196816    rs2369796    A    T    377.33    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.407;DB;DP=55;Dels=0.02;FS=1.01;HRun=10;HaplotypeScore=1.5449;MQ=58.33;MQ0=0;MQRankSum=-0.597;QD=6.74;ReadPosRankSum=-0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:29,26:55:99:407,0,940
3    132197995    rs62292950    T    G    704.39    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.556;QD=20.13;ReadPosRankSum=0.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:14,21:35:99:734,0,472
3    132198156    rs62292951    C    T    599.11    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.668;DB;DP=50;Dels=0.0;FS=5.127;HRun=0;HaplotypeScore=0.9789;MQ=59.16;MQ0=0;MQRankSum=-0.151;QD=11.98;ReadPosRankSum=-0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:28,22:50:99:629,0,828
3    132202449    rs62292953    T    A    374.34    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=26;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.401;QD=14.4;ReadPosRankSum=0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464766    GT:AD:DP:GQ:PL    0/1:11,15:26:99:404,0,341
3    132217957    rs78526588    T    G    613.45    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.414;DB;DP=38;Dels=0.0;FS=3.592;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=16.14;ReadPosRankSum=-0.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:16,22:38:99:643,0,532
3    132218441    rs68021752    A    AT    555.42    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.869;DB;DP=47;FS=0.0;HRun=3;HaplotypeScore=101.7834;IndelType=I;MQ=60.23;MQ0=0;MQRankSum=1.024;QD=11.82;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:30,17:47:99:594,0,936
3    132218623    rs3762672    G    T    2512.37    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.294;DB;DP=179;Dels=0.0;FS=4.578;HRun=1;HaplotypeScore=0.9832;MQ=59.74;MQ0=0;MQRankSum=0.21;QD=14.04;ReadPosRankSum=-0.7;SNPEFF_AMINO_ACID_CHANGE=A110S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_132218578_132218652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538066    GT:AD:DP:GQ:PL    0/1:91,88:179:99:2542,0,2884
3    132219554    rs11925382    T    C    941.03    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.13;DB;DP=60;Dels=0.0;FS=9.715;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.518;QD=15.68;ReadPosRankSum=0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:29,31:60:99:971,0,945
3    132221076    rs60016025    CT    C    130.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.714;DB;DP=27;FS=0.0;HRun=16;HaplotypeScore=182.0185;IndelType=D;MQ=55.58;MQ0=0;MQRankSum=0.671;QD=4.85;ReadPosRankSum=0.075;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    1/1:7,14:27:12.20:172,12,0
3    132223983    rs9813230    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:82,6,0
3    132224128    rs62292959    G    A    370.53    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.976;DB;DP=30;Dels=0.0;FS=4.439;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.126;QD=12.35;ReadPosRankSum=-0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:17,13:30:99:401,0,491
3    132229708    rs78208917    A    G    164.07    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=12.62;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:6,7:13:99:194,0,208
3    132235344    rs80120242    A    T    542.75    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=49;Dels=0.0;FS=1.192;HRun=1;HaplotypeScore=1.9226;MQ=59.53;MQ0=0;MQRankSum=0.394;QD=11.08;ReadPosRankSum=-0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513822    GT:AD:DP:GQ:PL    0/1:27,22:49:99:573,0,800
3    132244406    rs754993    G    A    679.19    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=59;Dels=0.0;FS=4.571;HRun=0;HaplotypeScore=2.6183;MQ=58.82;MQ0=0;MQRankSum=0.359;QD=11.51;ReadPosRankSum=-0.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463038    GT:AD:DP:GQ:PL    0/1:31,28:59:99:709,0,1040
3    132250027    rs3816529    G    C    30.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.02;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260818    GT:AD:DP:GQ:PL    0/1:3,2:5:60.10:60,0,110
3    132277866    rs2270801    G    A    1374.35    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.518;DB;DP=108;Dels=0.0;FS=1.588;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.754;QD=12.73;ReadPosRankSum=-1.899;SNPEFF_AMINO_ACID_CHANGE=I289;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_132277316_132277929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACAD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545291    GT:AD:DP:GQ:PL    0/1:55,53:108:99:1404,0,1446
3    132338346    rs41272321    T    G    851.94    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.772;DB;DP=67;Dels=0.0;FS=0.924;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.72;ReadPosRankSum=-0.182;SNPEFF_AMINO_ACID_CHANGE=K414T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_132338312_132338389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACAD11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264990    GT:AD:DP:GQ:PL    0/1:35,32:67:99:882,0,1039
3    132345482    rs62291504    G    T    322.71    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.323;DB;DP=23;Dels=0.0;FS=2.291;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.646;QD=14.03;ReadPosRankSum=0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACAD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489991    GT:AD:DP:GQ:PL    0/1:12,11:23:99:353,0,405
3    132360883    rs821572    C    T    2493.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_AMINO_ACID_CHANGE=R157H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_132360816_132360977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACAD11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264990    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2526,184,0
3    132363527    rs1079367    T    C    49.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.15;ReadPosRankSum=-0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393156    GT:AD:DP:GQ:PL    0/1:5,3:8:79.16:79,0,179
3    132394556    rs2305629    T    C    575.12    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=37;Dels=0.0;FS=1.356;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.501;QD=15.54;ReadPosRankSum=1.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326682    GT:AD:DP:GQ:PL    0/1:18,19:37:99:605,0,552
3    132401421    rs6792074    G    A    430.88    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.958;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.137;QD=17.24;ReadPosRankSum=-1.396;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264991    GT:AD:DP:GQ:PL    0/1:11,14:25:99:461,0,373
3    132409597    rs62292469    C    A    271.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.347;QD=13.59;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515289    GT:AD:DP:GQ:PL    0/1:8,12:20:99:302,0,274
3    132410202    rs2271491    A    G    580.42    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.288;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-1.002;QD=13.19;ReadPosRankSum=0.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326682    GT:AD:DP:GQ:PL    0/1:20,24:44:99:610,0,700
3    132410214    rs2271490    T    C    598.04    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.398;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.5;QD=17.59;ReadPosRankSum=-0.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326682    GT:AD:DP:GQ:PL    0/1:16,18:34:99:628,0,540
3    132413941    rs10804612    A    C    204.55    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=13.64;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469232    GT:AD:DP:GQ:PL    0/1:8,7:15:99:235,0,265
3    132415424    rs76177059    T    C    181.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=18.14;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469232    GT:AD:DP:GQ:PL    0/1:4,6:10:99:211,0,124
3    132431348    rs111819704    C    T    443.86    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=3.517;DB;DP=36;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=0.9997;MQ=59.23;MQ0=0;MQRankSum=-1.299;QD=12.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326682    GT:AD:DP:GQ:PL    0/1:19,17:36:99:474,0,528
3    132431380    rs62292473    G    C    408    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=27;Dels=0.0;FS=3.188;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.205;QD=15.11;ReadPosRankSum=-0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326682    GT:AD:DP:GQ:PL    0/1:14,13:27:99:438,0,394
3    132434156    rs17414558    T    C    149.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.097;QD=10.67;ReadPosRankSum=0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343113    GT:AD:DP:GQ:PL    0/1:8,6:14:99:179,0,289
3    132435823    rs11718115    C    T    386.04    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.931;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=12.87;ReadPosRankSum=0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343113    GT:AD:DP:GQ:PL    0/1:16,14:30:99:416,0,413
3    132437034    rs62292475    A    G    174.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.779;QD=14.51;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383282    GT:AD:DP:GQ:PL    0/1:6,6:12:99:204,0,197
3    132438301    rs3860503    T    C    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383282    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
3    132441268    rs13099099    T    C    77.70    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.54;ReadPosRankSum=0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NPHP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383282    GT:AD:DP:GQ:PL    0/1:1,4:5:19.33:108,0,19
3    133099245    rs1197314    G    A    383.32    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=45;Dels=0.0;FS=1.263;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.768;QD=8.52;ReadPosRankSum=-1.906;SNPEFF_AMINO_ACID_CHANGE=P230;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133098596_133100005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM108;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321871    GT:AD:DP:GQ:PL    0/1:29,16:45:99:413,0,889
3    133108978    rs1197296    A    G    1409.21    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.06;DB;DP=136;Dels=0.0;FS=6.261;HRun=0;HaplotypeScore=1.9783;MQ=59.32;MQ0=0;MQRankSum=0.481;QD=10.36;ReadPosRankSum=-0.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515826    GT:AD:DP:GQ:PL    0/1:77,59:136:99:1439,0,2543
3    133114513    rs1197301    A    C    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321871    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,71
3    133114893    rs1197300    C    T    510.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511388    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:544,39,0
3    133166403    rs7644197    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    133185521    rs72302916    C    CAAAA    322.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=20;HaplotypeScore=210.7852;IndelType=I;MQ=35.98;MQ0=0;QD=26.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302334    GT:AD:DP:GQ:PL    1/1:4,1:12:26.26:365,26,0
3    133185834    rs2737717    T    C    256.49    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.211;DB;DP=29;Dels=0.0;FS=1.974;HRun=2;HaplotypeScore=0.0;MQ=57.41;MQ0=0;MQRankSum=1.364;QD=8.84;ReadPosRankSum=-1.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302334    GT:AD:DP:GQ:PL    0/1:18,11:29:99:286,0,623
3    133185848    rs10589008    ACT    A    399.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.989;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=112.8875;IndelType=D;MQ=56.85;MQ0=0;MQRankSum=-0.824;QD=16.63;ReadPosRankSum=0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302334    GT:AD:DP:GQ:PL    0/1:12,12:24:99:438,0,474
3    133191385    rs79087781    C    A    178.67    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=17.87;ReadPosRankSum=-0.573;SNPEFF_AMINO_ACID_CHANGE=A407D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133191189_133191409;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302334    GT:AD:DP:GQ:PL    0/1:3,7:10:97.10:209,0,97
3    133191453    rs7628499    A    G    34.59    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.94;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511434    GT:AD:DP:GQ:PL    0/1:5,2:7:64.58:65,0,185
3    133329943    rs1444601    G    A    2056.77    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.624;DB;DP=155;Dels=0.0;FS=19.997;HRun=2;HaplotypeScore=3.0845;MQ=59.85;MQ0=0;MQRankSum=1.087;QD=13.27;ReadPosRankSum=-0.381;SNPEFF_AMINO_ACID_CHANGE=L1360;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133329848_133329985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    0/1:83,72:155:99:2087,0,2798
3    133335787    rs3732574    C    T    664.23    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=2.109;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.99;QD=15.1;ReadPosRankSum=0.711;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513818    GT:AD:DP:GQ:PL    0/1:19,25:44:99:694,0,603
3    133338862    rs4854588    A    C    81.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:111,0,68
3    133339340    rs2887747    A    G    130.43    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.86;ReadPosRankSum=2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    0/1:6,5:11:99:160,0,212
3    133341988    rs10935070    T    C    1025.38    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=63;Dels=0.0;FS=1.037;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.479;QD=16.28;ReadPosRankSum=-0.604;SNPEFF_AMINO_ACID_CHANGE=N1042S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133341935_133342037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    0/1:27,36:63:99:1055,0,747
3    133347034    rs1550742    T    C    60.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.13;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    0/1:2,3:5:66.85:91,0,67
3    133362345    rs139038309    T    C    188.62    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=14.51;ReadPosRankSum=1.855;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509162    GT:AD:DP:GQ:PL    0/1:5,8:13:99:219,0,168
3    133368362    rs3192149    T    G    2668.48    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=5.652;DB;DP=182;Dels=0.0;FS=15.903;HRun=0;HaplotypeScore=1.2434;MQ=59.87;MQ0=0;MQRankSum=-0.447;QD=14.66;ReadPosRankSum=1.382;SNPEFF_AMINO_ACID_CHANGE=K457Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133368227_133368477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    0/1:98,84:182:99:2698,0,2959
3    133374030    rs7639941    T    C    245.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:278,21,0
3    133375785    rs2718801    G    A    3484.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.76;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    1/1:0,97:98:99:3485,274,0
3    133377782    rs2718804    G    A    450.94    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=3.728;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=58.73;MQ0=0;MQRankSum=-0.847;QD=13.66;ReadPosRankSum=-1.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    0/1:17,16:33:99:481,0,459
3    133380130    rs2718805    T    C    206.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260810    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:239,18,0
3    133465283    rs1130459    A    G    40.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.25;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466911    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:71,0,36
3    133473625    rs8177220    G    T    397.95    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.062;QD=12.84;ReadPosRankSum=0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414694    GT:AD:DP:GQ:PL    0/1:14,16:31:99:428,0,492
3    133475563    rs4241357    G    T    339.10    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.262;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.569;QD=14.74;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414694    GT:AD:DP:GQ:PL    0/1:11,12:23:99:369,0,364
3    133475722    rs1799852    C    T    1271.81    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.515;DB;DP=89;Dels=0.0;FS=9.037;HRun=1;HaplotypeScore=3.3607;MQ=59.48;MQ0=0;MQRankSum=-0.276;QD=14.29;ReadPosRankSum=-2.101;SNPEFF_AMINO_ACID_CHANGE=L120;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133475675_133475853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264998    GT:AD:DP:GQ:PL    0/1:43,46:89:99:1302,0,1323
3    133475812    rs1799899    G    A    827.14    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.257;DB;DP=57;Dels=0.0;FS=20.827;HRun=0;HaplotypeScore=1.5115;MQ=59.19;MQ0=0;MQRankSum=0.435;QD=14.51;ReadPosRankSum=0.123;SNPEFF_AMINO_ACID_CHANGE=G150S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133475675_133475853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264998    GT:AD:DP:GQ:PL    0/1:26,31:57:99:857,0,864
3    133476421    rs8177237    C    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414694    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    133477821    rs190085055    A    C    303.27    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.135;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.591;QD=11.66;ReadPosRankSum=1.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414694    GT:AD:DP:GQ:PL    0/1:14,12:26:99:333,0,502
3    133483696    rs1880669    T    C    1643.10    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=1.267;DB;DP=96;Dels=0.0;FS=2.903;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=17.12;ReadPosRankSum=1.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264998    GT:AD:DP:GQ:PL    0/1:34,62:96:99:1673,0,949
3    133485133    rs2692696    A    G    4696.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.82;MQ0=0;QD=36.13;SNPEFF_AMINO_ACID_CHANGE=I321V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133485122_133485277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264998    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4697,346,0
3    133485371    rs1525891    G    C    415.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.229;QD=9.23;ReadPosRankSum=0.494;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264998    GT:AD:DP:GQ:PL    0/1:30,15:45:99:445,0,1031
3    133486958    rs8649    G    C    960.26    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=67;Dels=0.0;FS=2.337;HRun=0;HaplotypeScore=1.9748;MQ=60.0;MQ0=0;MQRankSum=0.327;QD=14.33;ReadPosRankSum=-0.481;SNPEFF_AMINO_ACID_CHANGE=L397;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133486873_133487008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264998    GT:AD:DP:GQ:PL    0/1:32,35:67:99:990,0,998
3    133489583    rs1525890    G    A    38.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=7.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264998    GT:AD:DP:GQ:PL    0/1:3,2:5:66.59:69,0,67
3    133494529    rs1880668    C    A    236.51    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.409;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.161;QD=8.16;ReadPosRankSum=-1.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462495    GT:AD:DP:GQ:PL    0/1:19,10:29:99:267,0,642
3    133526670    .    A    G    779.33    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=0.497;DP=43;Dels=0.0;FS=3.084;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.115;QD=18.12;ReadPosRankSum=1.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484684    GT:AD:DP:GQ:PL    0/1:15,28:43:99:809,0,433
3    133553527    rs2280672    C    T    1267.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460865    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1301,99,0
3    133556964    rs67302117    ACCGTGCCGGGCC    A    1508.75    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=5.464;DB;DP=50;FS=1.786;HRun=0;HaplotypeScore=528.0433;IndelType=D;MQ=51.66;MQ0=0;MQRankSum=-3.847;QD=30.18;ReadPosRankSum=-0.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460865    GT:AD:DP:GQ:PL    0/1:29,21:50:99:1548,0,3385
3    133583577    rs3811646    C    T    182.84    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.585;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=9.14;ReadPosRankSum=0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285208    GT:AD:DP:GQ:PL    0/1:13,7:20:99:213,0,468
3    133661352    rs3923834    G    T    186.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310926    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:220,18,0
3    133666209    rs34550074    C    T    891    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=30.72;SNPEFF_AMINO_ACID_CHANGE=A320T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133666100_133666289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000493729    GT:AD:DP:GQ:PL    1/1:0,29:29:72.22:924,72,0
3    133667646    rs55943046    C    T    1116.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=39.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464676    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1149,84,0
3    133670073    rs6767412    T    C    2719.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_AMINO_ACID_CHANGE=R204;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_133670052_133670188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493729    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2753,208,0
3    133670225    rs6767522    T    C    1127.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.126;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.52;MQ=60.0;MQ0=0;MQRankSum=-0.606;QD=27.49;ReadPosRankSum=-1.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478651    GT:AD:DP:GQ:PL    1/1:1,40:41:67.72:1160,68,0
3    133670391    rs4854769    A    C    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=19.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478651    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
3    133692497    rs4634113    A    G    462.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310926    GT:AD:DP:GQ:PL    1/1:0,17:17:36.12:495,36,0
3    133692743    rs4241362    C    T    164.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310926    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
3    133698280    rs4640563    C    G    3859.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478662    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3859,292,0
3    133877825    rs4280635    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    133894390    rs9858000    G    A    1286.05    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=3.947;DB;DP=86;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=-0.41;QD=14.95;ReadPosRankSum=0.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481382    GT:AD:DP:GQ:PL    0/1:39,47:86:99:1316,0,1228
3    134071042    rs6439477    C    T    145.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.13;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249883    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,119
3    134075326    rs9450    G    C    88.86    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.978;DB;DP=26;Dels=0.0;FS=6.812;HRun=1;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=-0.7;QD=3.42;ReadPosRankSum=-0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513145    GT:AD:DP:GQ:PL    0/1:20,6:26:99:119,0,709
3    134080661    rs1077718    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249883    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    134084727    rs139298691    C    T    742.02    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.755;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;MQRankSum=-0.361;QD=12.79;ReadPosRankSum=-0.115;SNPEFF_AMINO_ACID_CHANGE=R404H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_134084659_134084751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249883    GT:AD:DP:GQ:PL    0/1:28,30:58:99:772,0,798
3    134085070    rs138993919    GAAGT    G    5217.79    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=11.637;DB;DP=228;FS=1.175;HRun=0;HaplotypeScore=1067.1116;IndelType=D;MQ=57.59;MQ0=1;MQRankSum=-1.74;QD=22.79;ReadPosRankSum=-0.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504234    GT:AD:DP:GQ:PL    0/1:121,108:228:99:5218,0,8632
3    134085370    rs7613066    G    A    259.20    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=14;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.626;QD=18.51;ReadPosRankSum=0.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502491    GT:AD:DP:GQ:PL    0/1:4,10:14:99:289,0,127
3    134086207    rs1466827    G    A    586.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502491    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:620,48,0
3    134128643    rs7431009    T    C    204.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.24;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC010207.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408386    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
3    134213981    rs17694011    T    C    172.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.422;QD=19.21;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332047    GT:AD:DP:GQ:PL    0/1:3,6:9:95.22:203,0,95
3    134214042    rs62269547    T    C    325.87    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=17.15;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332047    GT:AD:DP:GQ:PL    0/1:9,10:19:99:356,0,315
3    134226159    rs6766818    C    T    271.19    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.64;MQ0=0;MQRankSum=1.342;QD=8.75;ReadPosRankSum=-1.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512894    GT:AD:DP:GQ:PL    0/1:20,11:31:99:301,0,686
3    134256159    rs12634127    A    G    357.96    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.11;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=60.0;MQ0=0;MQRankSum=0.329;QD=11.93;ReadPosRankSum=-1.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504013    GT:AD:DP:GQ:PL    0/1:14,16:30:99:388,0,458
3    134264859    rs1357762    A    C    111.62    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9996;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.4;ReadPosRankSum=1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332047    GT:AD:DP:GQ:PL    0/1:5,4:9:99:142,0,180
3    134266124    rs12637751    A    G    156.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=8.7;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332047    GT:AD:DP:GQ:PL    0/1:12,6:18:99:187,0,422
3    134266148    rs12632372    G    C    822.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332047    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:855,63,0
3    134266321    rs11927068    A    G    353.90    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.208;DB;DP=27;Dels=0.0;FS=4.869;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.024;QD=13.11;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332047    GT:AD:DP:GQ:PL    0/1:14,13:27:99:384,0,499
3    134266447    rs28702610    T    G    33.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.31;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332047    GT:AD:DP:GQ:PL    0/1:2,2:4:63.22:63,0,71
3    134277195    rs35934324    A    AT    206.79    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.799;DB;DP=20;FS=0.0;HRun=6;HaplotypeScore=40.9181;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=-0.044;QD=10.34;ReadPosRankSum=-2.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513295    GT:AD:DP:GQ:PL    0/1:12,8:20:99:246,0,250
3    134280395    rs6777283    T    A    504.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354446    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:538,39,0
3    134322742    rs2293293    A    G    1015.03    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.276;DB;DP=72;Dels=0.0;FS=1.998;HRun=0;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;MQRankSum=1.127;QD=14.1;ReadPosRankSum=-0.958;SNPEFF_AMINO_ACID_CHANGE=L534;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_134321980_134323316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508956    GT:AD:DP:GQ:PL    0/1:35,37:72:99:1045,0,1175
3    134322814    rs2293294    G    C    1312.98    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.641;DB;DP=95;Dels=0.0;FS=2.675;HRun=2;HaplotypeScore=1.9155;MQ=60.0;MQ0=0;MQRankSum=0.19;QD=13.82;ReadPosRankSum=-1.44;SNPEFF_AMINO_ACID_CHANGE=G510;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_134321980_134323316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508956    GT:AD:DP:GQ:PL    0/1:48,47:95:99:1343,0,1404
3    134323156    rs4955535    A    G    1348.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=F396;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_134321980_134323316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508956    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1381,117,0
3    134328864    rs4245905    C    T    247.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508041    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
3    134344182    rs4435682    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460895    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    134369716    rs13060869    C    A    309.56    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=25;Dels=0.0;FS=4.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.897;QD=12.38;ReadPosRankSum=-1.006;SNPEFF_AMINO_ACID_CHANGE=T29;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_134369667_134369864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310263    GT:AD:DP:GQ:PL    0/1:13,12:25:99:340,0,442
3    134514579    rs9852662    T    C    1502.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.13;MQ0=0;QD=25.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398015    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1536,135,0
3    134825512    rs3732567    G    C    557.44    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.386;DB;DP=55;Dels=0.0;FS=8.963;HRun=0;HaplotypeScore=1.367;MQ=59.66;MQ0=0;MQRankSum=1.153;QD=10.14;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398015    GT:AD:DP:GQ:PL    0/1:28,27:55:99:587,0,940
3    134852051    rs1525014    C    A    162.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482618    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
3    134880745    rs2270882    G    T    327.51    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.83;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=19.27;ReadPosRankSum=0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398015    GT:AD:DP:GQ:PL    0/1:7,10:17:99:358,0,238
3    134898742    rs3732566    C    T    4595.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=Y161;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_134898702_134898824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493838    GT:AD:DP:GQ:PL    1/1:0,133:133:99:4595,334,0
3    134967152    .    C    A    834.25    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.419;DP=80;Dels=0.0;FS=6.418;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=1.276;QD=10.43;ReadPosRankSum=1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398015    GT:AD:DP:GQ:PL    0/1:49,31:80:99:864,0,1346
3    134968465    rs4243397    T    C    469.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=24.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398015    GT:AD:DP:GQ:PL    1/1:0,19:19:45.11:502,45,0
3    134968574    rs4243398    T    A    118.66    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.73;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398015    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:149,0,27
3    135720241    rs4678432    T    C    136.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=13.62;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490467    GT:AD:DP:GQ:PL    0/1:5,5:10:99:166,0,167
3    135720851    rs6779903    G    T    813.92    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.448;DB;DP=42;Dels=0.0;FS=2.913;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.101;QD=19.38;ReadPosRankSum=-1.023;SNPEFF_AMINO_ACID_CHANGE=A171S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_135719901_135722335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264977    GT:AD:DP:GQ:PL    0/1:16,26:42:99:844,0,489
3    135742057    rs113986045    G    GTGTTTTGTTT    758.04    PASS    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.932;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=317.3022;IndelType=I;MQ=54.5;MQ0=0;MQRankSum=-0.555;QD=18.05;ReadPosRankSum=-1.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264977    GT:AD:DP:GQ:PL    0/1:36,4:42:99:797,0,989
3    135759669    rs3832193    T    TG    144.04    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=25.4703;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=13.09;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264977    GT:AD:DP:GQ:PL    0/1:6,5:11:99:183,0,180
3    135822011    rs75262249    A    G    369.46    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DB;DP=21;Dels=0.0;FS=6.69;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=17.59;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264977    GT:AD:DP:GQ:PL    0/1:10,11:21:99:399,0,310
3    135913665    rs1992952    A    G    1132.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309993    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1166,102,0
3    136002809    rs3821445    T    C    314.80    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.595;DB;DP=27;Dels=0.0;FS=3.078;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.297;QD=11.66;ReadPosRankSum=-0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459873    GT:AD:DP:GQ:PL    0/1:15,11:27:99:345,0,517
3    136035737    rs9833162    A    G    429.16    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.569;DB;DP=35;Dels=0.0;FS=1.713;HRun=0;HaplotypeScore=1.6828;MQ=59.34;MQ0=0;MQRankSum=0.017;QD=12.26;ReadPosRankSum=-1.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251654    GT:AD:DP:GQ:PL    0/1:19,16:35:99:459,0,620
3    136057142    rs112518519    AATT    A    1233.20    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=6.017;DB;DP=58;FS=7.747;HRun=0;HaplotypeScore=222.3874;IndelType=D;MQ=56.85;MQ0=0;MQRankSum=-2.166;QD=21.26;ReadPosRankSum=-0.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471595    GT:AD:DP:GQ:PL    0/1:28,30:58:99:1272,0,1640
3    136059537    rs503973    G    C    491.40    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.414;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=58.67;MQ0=0;MQRankSum=-0.149;QD=14.04;ReadPosRankSum=0.679;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471595    GT:AD:DP:GQ:PL    0/1:19,16:35:99:521,0,676
3    136060139    rs477142    A    G    145.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471595    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
3    136067778    rs696516    G    T    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236698    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
3    136088038    rs9860801    G    A    562.89    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=45;Dels=0.0;FS=2.649;HRun=2;HaplotypeScore=0.5784;MQ=59.49;MQ0=0;MQRankSum=0.692;QD=12.51;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=F403;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_136087950_136088124;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536929    GT:AD:DP:GQ:PL    0/1:23,22:45:99:593,0,708
3    136139878    rs9819496    G    A    442.68    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.942;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=59.2;MQ0=0;MQRankSum=-0.327;QD=15.26;ReadPosRankSum=-2.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236698    GT:AD:DP:GQ:PL    0/1:15,14:29:99:473,0,436
3    136196028    rs16843991    T    C    144.29    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=12.02;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236698    GT:AD:DP:GQ:PL    0/1:7,5:12:99:174,0,250
3    136196071    rs1394092    C    T    283.71    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=23;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=12.34;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236698    GT:AD:DP:GQ:PL    0/1:11,12:23:99:314,0,393
3    136218930    rs900048    C    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236698    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    136667405    rs1048145    T    C    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.91;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467911    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,144
3    136677064    rs6773440    A    G    597.72    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.076;DB;DP=37;Dels=0.0;FS=2.191;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.048;QD=16.15;ReadPosRankSum=-1.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL20RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309741    GT:AD:DP:GQ:PL    0/1:19,18:37:99:628,0,644
3    136728886    rs361235    G    T    265.76    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.596;QD=11.07;ReadPosRankSum=-1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL20RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309741    GT:AD:DP:GQ:PL    0/1:15,9:24:99:296,0,546
3    136739387    rs63332362    CT    C    437.57    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=4.933;DB;DP=35;FS=1.421;HRun=1;HaplotypeScore=137.3163;IndelType=D;MQ=60.31;MQ0=0;MQRankSum=-0.724;QD=12.5;ReadPosRankSum=1.128;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,14:35:99:477,0,903
3    136739406    rs1385306    C    G    409.46    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.575;DB;DP=41;Dels=0.0;FS=1.243;HRun=1;HaplotypeScore=0.0;MQ=60.26;MQ0=0;MQRankSum=0.15;QD=9.99;ReadPosRankSum=0.15;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,19:41:99:439,0,653
3    137717991    rs6764398    G    C    349.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343735    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:382,30,0
3    137743508    rs17204075    A    T    917.16    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.704;DB;DP=67;Dels=0.0;FS=2.257;HRun=1;HaplotypeScore=0.8321;MQ=59.66;MQ0=0;MQRankSum=-0.691;QD=13.69;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=M138L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137743449_137743566;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536138    GT:AD:DP:GQ:PL    0/1:36,31:67:99:947,0,1139
3    137748586    rs41265451    G    A    36.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000183605    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
3    137749839    rs16847742    A    G    1911.82    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.091;DB;DP=172;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6828;MQ=59.87;MQ0=0;MQRankSum=0.629;QD=11.12;ReadPosRankSum=-0.432;SNPEFF_AMINO_ACID_CHANGE=S203;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137749812_137750097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536138    GT:AD:DP:GQ:PL    0/1:93,79:172:99:1942,0,3049
3    137750056    rs55923693    T    C    460.62    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.606;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=19.19;ReadPosRankSum=-0.381;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000183605    GT:AD:DP:GQ:PL    0/1:10,14:24:99:491,0,311
3    137781923    rs329388    A    C    270.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:304,24,0
3    137783700    rs179282    T    C    475.20    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=1.13;QD=9.7;ReadPosRankSum=1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469243    GT:AD:DP:GQ:PL    0/1:31,18:49:99:505,0,1086
3    137786442    rs442800    T    C    331.96    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=31;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.181;QD=10.71;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=K645E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137786373_137786542;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    0/1:18,13:31:99:362,0,604
3    137787047    rs374045    C    T    336.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.42;SNPEFF_AMINO_ACID_CHANGE=R593H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137786993_137787209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    1/1:0,14:15:33.08:369,33,0
3    137787192    rs446644    T    C    786.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.13;SNPEFF_AMINO_ACID_CHANGE=T545A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137786993_137787209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    1/1:0,27:27:69.18:820,69,0
3    137787282    rs419075    T    C    166.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=60.0;MQ0=0;QD=20.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469243    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:199,18,0
3    137787355    rs446847    T    C    157.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469243    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:191,15,0
3    137799291    rs384828    A    T    338.60    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.484;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.89;QD=15.39;ReadPosRankSum=0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    0/1:10,12:22:99:369,0,338
3    137799498    rs405602    T    C    694.81    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.744;DB;DP=35;Dels=0.0;FS=13.206;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.666;QD=19.85;ReadPosRankSum=-0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    0/1:13,22:35:99:725,0,391
3    137800656    rs2622711    A    G    204.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9942;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=11.38;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    0/1:10,8:18:99:235,0,284
3    137807259    rs2724693    G    A    437.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.852;DB;DP=35;Dels=0.0;FS=5.61;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.017;QD=12.49;ReadPosRankSum=0.787;SNPEFF_AMINO_ACID_CHANGE=R321W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137807221_137807349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    0/1:21,14:35:99:467,0,577
3    137813444    rs2622730    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327532    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    137843018    rs1564496    G    C    279.08    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.33;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.022;QD=12.69;ReadPosRankSum=-1.286;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A4GNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236709    GT:AD:DP:GQ:PL    0/1:10,12:22:99:309,0,261
3    137843094    rs6794722    C    T    608.35    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.038;DB;DP=39;Dels=0.0;FS=1.433;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.102;QD=15.6;ReadPosRankSum=1.272;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A4GNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236709    GT:AD:DP:GQ:PL    0/1:19,20:39:99:638,0,485
3    137843106    rs2170309    T    C    629.88    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=45;Dels=0.0;FS=9.164;HRun=0;HaplotypeScore=0.9665;MQ=59.49;MQ0=0;MQRankSum=1.9;QD=14.0;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=*341;SNPEFF_CODON_CHANGE=taA/taG;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_3_137842560_137843720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A4GNT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000236709    GT:AD:DP:GQ:PL    0/1:21,24:45:99:660,0,623
3    137843476    rs2246945    G    T    1015.17    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.649;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=59.74;MQ0=0;MQRankSum=-0.731;QD=11.54;ReadPosRankSum=0.394;SNPEFF_AMINO_ACID_CHANGE=A218D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137842560_137843720;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A4GNT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000236709    GT:AD:DP:GQ:PL    0/1:53,35:88:99:1045,0,1714
3    137850003    rs2724691    A    G    674.24    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.5;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.64;MQ0=0;MQRankSum=-0.972;QD=12.97;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=C32;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137849691_137850124;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A4GNT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000236709    GT:AD:DP:GQ:PL    0/1:28,24:52:99:704,0,873
3    137880695    rs9851548    A    G    417.54    PASS    AB=0.217;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.932;QD=18.15;ReadPosRankSum=0.261;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460271    GT:AD:DP:GQ:PL    0/1:5,18:23:99:448,0,142
3    137880743    rs2622736    G    A    1129.80    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=5.732;DB;DP=59;Dels=0.02;FS=1.616;HRun=0;HaplotypeScore=2.8995;MQ=59.62;MQ0=0;MQRankSum=0.455;QD=18.83;ReadPosRankSum=1.798;SNPEFF_AMINO_ACID_CHANGE=D307;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137880215_137881424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505015    GT:AD:DP:GQ:PL    0/1:24,35:59:99:1160,0,659
3    137881265    rs3732839    T    A    617.08    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.41;MQ0=0;MQRankSum=-0.423;QD=14.02;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=T133;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_137880215_137881424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505015    GT:AD:DP:GQ:PL    0/1:23,21:44:99:647,0,765
3    137882377    rs2622734    G    T    191.93    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=20;Dels=0.0;FS=3.468;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=9.6;ReadPosRankSum=-1.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260803    GT:AD:DP:GQ:PL    0/1:11,9:20:99:222,0,385
3    137882752    rs2622733    A    G    292.21    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=17.19;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260803    GT:AD:DP:GQ:PL    0/1:8,9:17:99:322,0,275
3    137890750    rs811811    T    C    42.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.71;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260803    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:73,0,66
3    137893744    rs329379    G    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463982    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,72
3    138008140    rs3732840    T    G    193.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393058    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:226,18,0
3    138025136    rs3856636    T    G    175.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317876    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
3    138025396    rs9846480    A    G    434.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317876    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:467,36,0
3    138033181    rs9289556    C    T    3680.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=E151;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_138033174_138033249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333911    GT:AD:DP:GQ:PL    1/1:0,117:118:99:3680,280,0
3    138091701    rs1199333    G    T    976.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289104    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1009,75,0
3    138170788    rs13095961    T    G    363.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289135    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:396,30,0
3    138171042    rs4678418    C    T    258.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289135    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:292,24,0
3    138173905    rs56236670    G    A    941.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289135    GT:AD:DP:GQ:PL    1/1:0,25:25:75.21:974,75,0
3    138176533    rs66644444    A    T    1351.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289135    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1384,102,0
3    138179308    rs67037472    G    A    1012.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289135    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1045,81,0
3    138179328    rs6763380    C    T    1686.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289135    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1719,135,0
3    138180712    rs1720836    C    T    186.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289135    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:219,18,0
3    138187568    rs1679167    C    T    3553.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389567    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3553,271,0
3    138189031    rs2347469    T    C    625.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389567    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:658,51,0
3    138189658    rs3813264    A    G    796.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468103    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:829,60,0
3    138191232    rs10935282    G    A    3500.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9962;MQ=59.35;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=G590R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_138191205_138191701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389567    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3500,268,0
3    138192192    rs1679168    T    C    168.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468103    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
3    138195529    rs1679169    C    T    2171.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8646;MQ=59.63;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ESYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460325    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2204,171,0
3    138213709    rs774012    T    C    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459695    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
3    138289163    rs1673608    T    C    1445.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_AMINO_ACID_CHANGE=L133;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_138289160_138289340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP70;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000468900    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1478,108,0
3    138289221    rs1673607    C    T    1804.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=S114N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_138289160_138289340;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000468900    GT:AD:DP:GQ:PL    1/1:1,53:54:99:1837,135,0
3    138329862    rs811322    G    A    2101.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=P21;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_138329446_138329879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAIM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338446    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2135,156,0
3    138340590    rs1672936    A    G    38.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAIM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338446    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
3    138341284    rs62793562    CT    C    148.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.962;DB;DP=24;FS=3.701;HRun=15;HaplotypeScore=108.2449;IndelType=D;MQ=60.39;MQ0=0;MQRankSum=-0.396;QD=6.18;ReadPosRankSum=0.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAIM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464912    GT:AD:DP:GQ:PL    0/1:7,15:24:31.87:187,0,32
3    138362639    .    GCAAAA    G    1202.17    PASS    AC=2;AF=1.00;AN=2;DP=29;FS=0.0;HRun=0;HaplotypeScore=167.852;IndelType=D;MQ=59.39;MQ0=0;QD=41.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-79L9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491837    GT:AD:DP:GQ:PL    1/1:6,23:29:69.24:1244,69,0
3    138362902    rs7641106    A    G    162.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-79L9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491837    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
3    138383013    rs28763909    C    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289153    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:74,0,34
3    138403390    rs625468    C    T    429.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289153    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:462,36,0
3    138417989    rs361080    G    A    208.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=23.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289153    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:241,18,0
3    138433568    rs497900    C    T    5921.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289153    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5922,430,0
3    139065988    rs1610195    C    T    537.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489521    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:571,45,0
3    139066902    rs10755092    A    T    209.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489521    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
3    139075644    rs9878548    C    A    694.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333188    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:727,54,0
3    139076974    rs7616756    G    A    330.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.776;QD=22.03;ReadPosRankSum=-0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310776    GT:AD:DP:GQ:PL    0/1:5,10:15:99:360,0,129
3    139094462    .    G    A    250.62    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.288;DP=29;Dels=0.0;FS=7.032;HRun=1;HaplotypeScore=0.0;MQ=55.9;MQ0=0;MQRankSum=0.066;QD=8.64;ReadPosRankSum=-0.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504295    GT:AD:DP:GQ:PL    0/1:17,12:29:99:281,0,517
3    139098357    rs9831108    A    C    1302.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504295    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1335,105,0
3    139102120    rs7373302    C    A    1538.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333188    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1572,120,0
3    139108250    rs3215032    C    CTG    568.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=41.335;IndelType=I;MQ=57.87;MQ0=0;QD=51.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333188    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:610,30,0
3    139195177    rs2233815    C    T    264.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.706;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.618;QD=14.7;ReadPosRankSum=1.413;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506825    GT:AD:DP:GQ:PL    0/1:9,9:18:99:295,0,304
3    139236683    rs2071388    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232219    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    139257545    rs113953652    GC    G    198.20    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.236;DB;DP=23;FS=0.0;HRun=5;HaplotypeScore=58.8259;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.724;QD=8.62;ReadPosRankSum=-0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232219    GT:AD:DP:GQ:PL    0/1:14,9:23:99:237,0,491
3    139280328    rs72584875    G    GA    521.63    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.496;DB;DP=24;FS=4.075;HRun=1;HaplotypeScore=55.3146;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=0.283;QD=21.73;ReadPosRankSum=0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NMNAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296202    GT:AD:DP:GQ:PL    0/1:10,14:24:99:561,0,282
3    139346684    rs62273066    C    G    789.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NMNAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296202    GT:AD:DP:GQ:PL    1/1:0,26:26:60.20:822,60,0
3    140122341    rs4683494    G    A    227.05    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.766;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1992;MQ=60.0;MQ0=0;MQRankSum=0.949;QD=8.73;ReadPosRankSum=-2.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:18,8:26:99:257,0,236
3    140140213    rs7643984    A    T    32.71    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.457;QD=2.18;ReadPosRankSum=0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:11,4:15:62.70:63,0,406
3    140140349    rs7622202    G    A    63.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=10.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:2,4:6:67.19:93,0,67
3    140167227    rs6765235    C    G    188.88    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=23.61;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:2,6:8:54.95:219,0,55
3    140167536    rs2081803    A    G    1285.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0199;MQ=58.89;MQ0=0;QD=30.61;SNPEFF_AMINO_ACID_CHANGE=Q321;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_140167361_140167546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1319,102,0
3    140178279    rs9836487    G    A    329.84    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9895;MQ=60.0;MQ0=0;MQRankSum=-0.152;QD=16.49;ReadPosRankSum=-0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:9,11:20:99:360,0,264
3    140178485    rs7632885    G    A    562.25    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.143;DB;DP=48;Dels=0.0;FS=4.179;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.623;QD=11.71;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=V366I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_140178363_140178611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:27,21:48:99:592,0,813
3    140178638    rs35843099    CCCT    C    902.46    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=5.234;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=219.3393;IndelType=D;MQ=59.95;MQ0=0;MQRankSum=-0.161;QD=17.36;ReadPosRankSum=-0.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:31,21:52:99:941,0,1719
3    140185248    rs534395    T    C    244.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
3    140281723    rs11714465    C    T    607.82    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.57;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.62;MQ0=0;MQRankSum=0.32;QD=16.43;ReadPosRankSum=0.564;SNPEFF_AMINO_ACID_CHANGE=S761;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_140281653_140281798;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:17,20:37:99:638,0,543
3    140282084    rs4683509    C    G    1148.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    1/1:0,34:35:87.27:1181,87,0
3    140282718    rs74938120    T    G    766.24    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9452;MQ=59.6;MQ0=0;MQRankSum=-0.171;QD=13.21;ReadPosRankSum=-1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:31,27:58:99:796,0,1048
3    140282861    rs10804675    C    T    2103.19    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=2.271;DB;DP=114;Dels=0.0;FS=0.748;HRun=1;HaplotypeScore=0.9789;MQ=59.6;MQ0=0;MQRankSum=0.356;QD=18.45;ReadPosRankSum=0.719;SNPEFF_AMINO_ACID_CHANGE=V847;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_140282803_140282987;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    0/1:43,71:114:99:2133,0,1080
3    140285115    rs4683510    T    C    75.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458420    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
3    140401693    rs698673    A    G    2798.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=K244R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_140401304_140402001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286349    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2831,220,0
3    140692486    rs2555707    G    T    254.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513887    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
3    140998214    rs13087169    G    A    638.80    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=3.25;DB;DP=49;Dels=0.0;FS=1.266;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.33;QD=13.04;ReadPosRankSum=-0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286353    GT:AD:DP:GQ:PL    0/1:25,24:49:99:669,0,735
3    141006396    rs2137016    G    C    116.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-3.123;QD=7.75;ReadPosRankSum=-0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505013    GT:AD:DP:GQ:PL    0/1:9,6:15:99:146,0,324
3    141464146    rs3184648    G    A    323.25    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.695;DB;DP=25;Dels=0.0;FS=14.753;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.927;QD=12.93;ReadPosRankSum=0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498828    GT:AD:DP:GQ:PL    0/1:14,11:25:99:353,0,355
3    141464231    rs11542226    C    T    193.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=24.15;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498828    GT:AD:DP:GQ:PL    0/1:2,6:8:42.78:223,0,43
3    141496974    rs1533499    G    A    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.97;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264952    GT:AD:DP:GQ:PL    0/1:2,2:4:57.59:66,0,58
3    141497150    rs1533501    C    T    618.57    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=53;Dels=0.0;FS=5.732;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-1.088;QD=11.67;ReadPosRankSum=0.539;SNPEFF_AMINO_ACID_CHANGE=D8;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_141496990_141497738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264952    GT:AD:DP:GQ:PL    0/1:30,23:53:99:649,0,775
3    141595883    rs7616510    G    C    171.44    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=24.49;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286371    GT:AD:DP:GQ:PL    0/1:1,6:7:19.58:201,0,20
3    141622749    rs6440050    G    C    119.98    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.0;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286371    GT:AD:DP:GQ:PL    0/1:1,4:5:23.53:150,0,24
3    141625999    rs7622417    G    C    361.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.576;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.535;QD=12.06;ReadPosRankSum=-0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286371    GT:AD:DP:GQ:PL    0/1:15,15:30:99:392,0,409
3    141626189    rs3838612    C    CGGTA    285.96    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=62.312;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=0.103;QD=26.0;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286371    GT:AD:DP:GQ:PL    0/1:6,4:11:99:325,0,246
3    141644175    rs4683650    T    C    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482635    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    141644274    rs1131029    G    C    275.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482635    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:308,24,0
3    141678347    rs6440054    A    T    966.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467667    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:1000,75,0
3    141682484    rs7612323    C    T    58.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=5.85;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478006    GT:AD:DP:GQ:PL    0/1:6,4:10:88.52:89,0,215
3    141724328    rs7627056    T    C    869.06    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=4.911;DB;DP=59;Dels=0.0;FS=9.251;HRun=0;HaplotypeScore=2.6342;MQ=60.0;MQ0=0;MQRankSum=2.497;QD=14.73;ReadPosRankSum=0.478;SNPEFF_AMINO_ACID_CHANGE=L47;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_141724283_141724386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFDP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467634    GT:AD:DP:GQ:PL    0/1:31,28:59:99:899,0,965
3    141812759    rs9877817    G    A    2588.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317104    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2622,205,0
3    141889009    rs13067957    T    G    318.13    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.64;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.814;QD=11.36;ReadPosRankSum=1.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486459    GT:AD:DP:GQ:PL    0/1:16,12:28:99:348,0,489
3    141891346    .    T    C    375.17    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.902;QD=19.75;ReadPosRankSum=0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392993    GT:AD:DP:GQ:PL    0/1:7,12:19:99:405,0,226
3    141904474    rs6785098    C    T    88.60    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.312;QD=6.82;ReadPosRankSum=-1.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460544    GT:AD:DP:GQ:PL    0/1:9,4:13:99:119,0,336
3    141904493    rs6798013    T    A    77.74    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=17;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.146;QD=4.57;ReadPosRankSum=-0.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460544    GT:AD:DP:GQ:PL    0/1:10,7:17:99:108,0,368
3    141904977    rs6440065    G    A    496.97    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=1.143;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5362;MQ=60.0;MQ0=0;MQRankSum=-1.715;QD=20.71;ReadPosRankSum=-1.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460544    GT:AD:DP:GQ:PL    0/1:7,17:24:99:527,0,176
3    141906446    rs72050046    CA    C    45.43    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=11;FS=0.0;HRun=17;HaplotypeScore=101.9511;IndelType=D;MQ=45.77;MQ0=0;MQRankSum=1.733;QD=4.13;ReadPosRankSum=1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392993    GT:AD:DP:GQ:PL    0/1:1,6:11:10.54:84,0,11
3    142168331    rs1802904    C    T    1552.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=Q2561;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_142168080_142168444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383101    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1586,123,0
3    142217537    rs2227932    A    G    281.52    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.259;DB;DP=24;Dels=0.0;FS=1.685;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=11.73;ReadPosRankSum=-0.029;SNPEFF_AMINO_ACID_CHANGE=Y1756;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_142217439_142217616;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383101    GT:AD:DP:GQ:PL    0/1:14,10:24:99:312,0,463
3    142405191    rs41265481    C    T    836.77    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=59.63;MQ0=0;MQRankSum=1.845;QD=13.28;ReadPosRankSum=0.326;SNPEFF_AMINO_ACID_CHANGE=A239;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_142405126_142405218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000476044    GT:AD:DP:GQ:PL    0/1:34,29:63:99:867,0,944
3    142567327    rs893883    G    A    995.34    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.379;DB;DP=57;Dels=0.0;FS=1.322;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=17.46;ReadPosRankSum=-1.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PCOLCE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295992    GT:AD:DP:GQ:PL    0/1:26,31:57:99:1025,0,866
3    142607487    rs1457684    C    G    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PCOLCE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
3    142681249    rs62276870    G    A    489.32    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=0.334;DB;DP=41;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=0.0;MQ=56.54;MQ0=0;MQRankSum=0.735;QD=11.93;ReadPosRankSum=0.682;SNPEFF_AMINO_ACID_CHANGE=S310;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_142680076_142682178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAQR9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340634    GT:AD:DP:GQ:PL    0/1:25,16:41:99:519,0,758
3    142720348    rs766360    G    A    393.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=U2SURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473835    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:427,33,0
3    142740061    rs4683720    G    A    321.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=U2SURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465175    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
3    142746260    rs9835348    T    C    254    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=U2SURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461591    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:287,24,0
3    142746988    rs1839406    A    G    77.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=U2SURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461591    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
3    142752293    rs1449869    G    A    154.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=U2SURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319822    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:187,15,0
3    142772785    rs16852921    G    A    540.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=U2SURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480029    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:574,42,0
3    142773738    rs10935479    C    T    1174.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.3;MQ0=0;QD=35.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=U2SURP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480029    GT:AD:DP:GQ:PL    1/1:0,32:33:90.30:1207,90,0
3    142895174    rs3927028    T    G    55.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=11.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-80H8.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538741    GT:AD:DP:GQ:PL    0/1:2,3:5:21.40:85,0,21
3    142895544    rs80262371    G    A    466.14    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.407;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.34;MQ0=0;MQRankSum=-0.098;QD=11.37;ReadPosRankSum=-0.126;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-80H8.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493219    GT:AD:DP:GQ:PL    0/1:20,21:41:99:496,0,624
3    142985924    rs75407673    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316549    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
3    143237158    rs9289664    G    C    368    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.89;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316549    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:401,30,0
3    143271365    rs1525861    A    C    216.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.783;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.418;QD=13.51;ReadPosRankSum=0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316549    GT:AD:DP:GQ:PL    0/1:8,8:16:99:246,0,247
3    143293012    rs6763202    A    G    177.93    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=17;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.299;QD=10.47;ReadPosRankSum=-1.684;SNPEFF_AMINO_ACID_CHANGE=C189;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_143292930_143293035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450105    GT:AD:DP:GQ:PL    0/1:9,8:17:99:208,0,274
3    143412268    rs12488981    T    C    673.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316549    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:707,54,0
3    143412373    rs58901417    G    A    123.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316549    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
3    143567207    rs11714060    A    G    799.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498717    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:832,69,0
3    145542054    rs143878350    A    G    547.08    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=49;Dels=0.0;FS=1.182;HRun=1;HaplotypeScore=0.6651;MQ=58.3;MQ0=0;MQRankSum=0.667;QD=11.16;ReadPosRankSum=0.503;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-88H10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463605    GT:AD:DP:GQ:PL    0/1:30,19:49:99:577,0,882
3    145542203    rs9877492    G    A    91.97    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=37;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.5784;MQ=51.14;MQ0=0;MQRankSum=-0.913;QD=2.49;ReadPosRankSum=-0.108;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-88H10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463605    GT:AD:DP:GQ:PL    0/1:22,15:37:99:122,0,777
3    145542204    rs9877227    C    T    91.97    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.81;DB;DP=37;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=51.14;MQ0=0;MQRankSum=-0.758;QD=2.49;ReadPosRankSum=-0.108;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-88H10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463605    GT:AD:DP:GQ:PL    0/1:22,15:37:99:122,0,778
3    145542558    rs7630694    T    G    450.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.092;DB;DP=32;Dels=0.0;FS=1.845;HRun=1;HaplotypeScore=0.0;MQ=55.94;MQ0=0;MQRankSum=1.451;QD=14.06;ReadPosRankSum=1.715;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-88H10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463605    GT:AD:DP:GQ:PL    0/1:16,16:32:99:480,0,487
3    145614845    rs9790074    T    A    150.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=16.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC055758.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410418    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,141
3    145796891    rs73010484    T    C    2458.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.292;DB;DP=77;Dels=0.0;FS=3.813;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.832;QD=31.92;ReadPosRankSum=1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460520    GT:AD:DP:GQ:PL    1/1:1,76:77:99:2491,154,0
3    145821806    rs6781300    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282903    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    145838895    rs4681297    C    T    1726.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282903    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1759,132,0
3    145842186    rs3762690    T    C    129.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282903    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
3    145878591    rs34803917    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282903    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    145878621    rs76718163    C    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282903    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
3    145878629    rs116299517    C    T    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_145878576_145878779;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000494950    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
3    145912177    rs9815240    T    G    1147.97    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.875;DB;DP=77;Dels=0.0;FS=4.829;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.545;QD=14.91;ReadPosRankSum=0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460350    GT:AD:DP:GQ:PL    0/1:39,38:77:99:1178,0,1064
3    145912299    rs1512902    C    T    449.49    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=4.829;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.41;QD=10.96;ReadPosRankSum=1.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460350    GT:AD:DP:GQ:PL    0/1:24,17:41:99:479,0,668
3    145914366    rs78851167    C    T    701.97    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.456;DB;DP=41;Dels=0.0;FS=3.873;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=17.12;ReadPosRankSum=1.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460350    GT:AD:DP:GQ:PL    0/1:20,21:41:99:732,0,617
3    145938528    rs3762686    C    A    285.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354952    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
3    146167352    rs2222465    G    A    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLSCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489015    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    146177815    rs6806535    C    T    131.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=10.93;ReadPosRankSum=-1.309;SNPEFF_AMINO_ACID_CHANGE=Q32;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_146177635_146177870;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PLSCR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000497985    GT:AD:DP:GQ:PL    0/1:7,5:12:99:161,0,234
3    146251430    rs2738905    A    G    135.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=11.3;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342435    GT:AD:DP:GQ:PL    0/1:4,8:12:99:166,0,128
3    146251433    rs2587024    T    G    132.11    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=10.16;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342435    GT:AD:DP:GQ:PL    0/1:5,8:13:99:162,0,128
3    147113586    rs73004638    A    T    588.10    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.762;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8665;MQ=59.2;MQ0=0;MQRankSum=0.238;QD=10.14;ReadPosRankSum=1.942;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462748    GT:AD:DP:GQ:PL    0/1:35,23:58:99:618,0,1174
3    147131234    rs143292136    A    G    638.86    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=61;Dels=0.0;FS=2.245;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.848;QD=10.47;ReadPosRankSum=-0.204;SNPEFF_AMINO_ACID_CHANGE=T414A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_147131141_147134506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZIC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282928    GT:AD:DP:GQ:PL    0/1:35,26:61:99:669,0,1001
3    147629122    rs6784312    A    T    509.12    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.544;DB;DP=51;Dels=0.0;FS=1.182;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.708;QD=9.98;ReadPosRankSum=-0.605;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092925.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408504    GT:AD:DP:GQ:PL    0/1:32,19:51:99:539,0,885
3    148459395    rs5182    C    T    805.80    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.595;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6642;MQ=58.55;MQ0=0;MQRankSum=2.107;QD=13.21;ReadPosRankSum=-1.262;SNPEFF_AMINO_ACID_CHANGE=L191;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_148458776_148460790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349243    GT:AD:DP:GQ:PL    0/1:35,26:61:99:836,0,1167
3    148459884    rs5183    A    G    774.32    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.345;DB;DP=60;Dels=0.0;FS=3.662;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.05;QD=12.91;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=P354;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_148458776_148460790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349243    GT:AD:DP:GQ:PL    0/1:35,25:60:99:804,0,1044
3    148546001    rs1492094    A    G    131.97    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=10.15;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282957    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,292
3    148552539    rs9830213    T    C    253.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494888    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:286,24,0
3    148575156    rs2331407    C    T    210.27    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=21.03;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282957    GT:AD:DP:GQ:PL    0/1:3,7:10:95.20:240,0,95
3    148575441    rs1356259    C    T    33.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.83;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282957    GT:AD:DP:GQ:PL    0/1:5,2:7:63.82:64,0,137
3    148597482    rs1032465    T    G    177.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=19.73;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296046    GT:AD:DP:GQ:PL    0/1:3,6:9:92.79:208,0,93
3    148597612    rs12489516    C    T    670.92    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=40;Dels=0.0;FS=2.795;HRun=0;HaplotypeScore=1.9331;MQ=58.25;MQ0=0;MQRankSum=-0.383;QD=16.77;ReadPosRankSum=0.711;SNPEFF_AMINO_ACID_CHANGE=T171M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_148597575_148597676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296046    GT:AD:DP:GQ:PL    0/1:17,23:40:99:701,0,545
3    148704081    rs9868669    G    A    429.11    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=39;Dels=0.0;FS=5.123;HRun=1;HaplotypeScore=0.9159;MQ=56.47;MQ0=0;MQRankSum=0.986;QD=11.0;ReadPosRankSum=1.394;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=UBQLN4P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368308    GT:AD:DP:GQ:PL    0/1:25,14:39:99:459,0,674
3    148712255    rs9819077    A    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296048    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    148714025    rs3772580    C    G    509.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.173;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=-1.061;QD=18.18;ReadPosRankSum=-0.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296048    GT:AD:DP:GQ:PL    0/1:12,16:28:99:539,0,323
3    148756825    rs6764352    G    A    1017.92    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.845;DB;DP=62;Dels=0.0;FS=4.264;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.21;QD=16.42;ReadPosRankSum=-1.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497427    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1048,0,857
3    148758135    rs1457604    C    T    40.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.34;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310053    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:70,0,29
3    148786108    rs812249    C    T    1959.38    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=5.794;DB;DP=124;Dels=0.0;FS=6.308;HRun=0;HaplotypeScore=1.9889;MQ=59.07;MQ0=0;MQRankSum=0.59;QD=15.8;ReadPosRankSum=-0.792;SNPEFF_AMINO_ACID_CHANGE=T300;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_148786027_148786122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLTF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392913    GT:AD:DP:GQ:PL    0/1:60,64:124:99:1989,0,1679
3    148788893    rs746671    C    T    64.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310053    GT:AD:DP:GQ:PL    0/1:1,3:4:30.21:95,0,30
3    148858987    rs111598115    C    CTTTTT    920.54    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=3.02;DB;DP=57;FS=0.0;HRun=13;HaplotypeScore=385.9094;IndelType=I;MQ=53.24;MQ0=0;MQRankSum=-2.919;QD=16.15;ReadPosRankSum=-1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296051    GT:AD:DP:GQ:PL    0/1:37,8:57:99:960,0,1012
3    148868292    rs150286093    GC    G    125.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=3;HaplotypeScore=35.9697;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=18.0;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296051    GT:AD:DP:GQ:PL    0/1:2,5:7:65.40:165,0,65
3    148868361    rs2689232    C    T    370.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.173;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=17.66;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296051    GT:AD:DP:GQ:PL    0/1:9,12:21:99:401,0,277
3    148876261    rs772903    T    G    76.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479771    GT:AD:DP:GQ:PL    0/1:2,3:5:60.54:106,0,61
3    148885851    rs2681096    G    A    228.69    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=20.79;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264613    GT:AD:DP:GQ:PL    0/1:4,7:11:99:259,0,132
3    148901406    rs143522213    AC    A    257.68    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=44.726;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=18.41;ReadPosRankSum=1.855;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462336    GT:AD:DP:GQ:PL    0/1:6,8:14:99:297,0,123
3    148916235    rs701753    T    A    303.28    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.843;DB;DP=28;Dels=0.0;FS=3.741;HRun=0;HaplotypeScore=0.0;MQ=47.39;MQ0=0;MQRankSum=-3.78;QD=10.83;ReadPosRankSum=0.571;SNPEFF_AMINO_ACID_CHANGE=E327D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_148916154_148916365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000494544    GT:AD:DP:GQ:PL    0/1:13,15:28:99:333,0,464
3    148925525    rs1523515    T    C    64.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455472    GT:AD:DP:GQ:PL    0/1:4,3:7:94.35:94,0,148
3    149039324    rs2015626    G    A    677.49    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.863;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.432;QD=12.55;ReadPosRankSum=1.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474754    GT:AD:DP:GQ:PL    0/1:26,27:54:99:707,0,834
3    149040024    rs74464774    G    A    478.66    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.63;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=14.5;ReadPosRankSum=-0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474754    GT:AD:DP:GQ:PL    0/1:17,16:33:99:509,0,541
3    149050834    rs1493263    G    C    64.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5767;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.07;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296059    GT:AD:DP:GQ:PL    0/1:5,3:8:94.56:95,0,175
3    149050925    rs1526786    T    C    114.48    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=5.45;ReadPosRankSum=2.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296059    GT:AD:DP:GQ:PL    0/1:16,5:21:99:144,0,603
3    149087404    rs8479    T    C    172.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493298    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
3    149087714    rs6776940    T    C    3400.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493298    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3400,265,0
3    149087909    rs1918123    A    G    85.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493298    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
3    149093238    rs4771    A    G    1288.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=T135;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_149093230_149093375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305366    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1322,105,0
3    149192564    rs9793    A    G    495.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463068    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:528,42,0
3    149192851    rs143312618    G    GC    1608.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=1;HaplotypeScore=89.4839;IndelType=I;MQ=61.41;MQ0=0;QD=42.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305354    GT:AD:DP:GQ:PL    1/1:1,37:38:99:1650,111,0
3    149193684    rs1802837    T    C    679.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_AMINO_ACID_CHANGE=C83;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_149193610_149193699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305354    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:713,57,0
3    149205217    rs34895718    A    G    316.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305354    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:350,27,0
3    149216298    rs10935762    C    T    83.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305354    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
3    149216311    rs11720325    A    T    127.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305354    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
3    149238595    rs112399999    C    CTTAA    2161.80    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.419;DB;DP=72;FS=0.0;HRun=0;HaplotypeScore=278.1351;IndelType=I;MQ=59.14;MQ0=0;MQRankSum=0.529;QD=30.03;ReadPosRankSum=0.638;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_3_149238032_149238776;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWTR1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000360632    GT:AD:DP:GQ:PL    0/1:44,25:72:99:2201,0,2248
3    149243694    rs9854499    G    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360632    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
3    149243715    rs77504578    T    G    108.97    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.11;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360632    GT:AD:DP:GQ:PL    0/1:4,5:9:99:139,0,137
3    149375289    rs6783790    G    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWTR1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000460517    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    149459341    rs7633238    A    G    1779.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.6735;MQ=59.55;MQ0=0;QD=34.9;SNPEFF_AMINO_ACID_CHANGE=N189;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_149456257_149459505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000473414    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1813,135,0
3    149459413    rs11549572    C    T    948.38    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=60;Dels=0.0;FS=0.989;HRun=0;HaplotypeScore=0.9993;MQ=59.62;MQ0=0;MQRankSum=0.03;QD=15.81;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=L165;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_149456257_149459505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000473414    GT:AD:DP:GQ:PL    0/1:27,33:60:99:978,0,865
3    149468530    rs9843784    T    G    1573.76    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=122;Dels=0.0;FS=2.332;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=-0.807;QD=12.79;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=I113L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_149468465_149468638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000473414    GT:AD:DP:GQ:PL    0/1:66,56:122:99:1604,0,1817
3    149468680    rs75480034    G    A    308.54    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.612;QD=11.02;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490008    GT:AD:DP:GQ:PL    0/1:17,11:28:99:339,0,586
3    149469159    rs41267879    C    G    493.58    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.734;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.026;QD=12.99;ReadPosRankSum=2.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490008    GT:AD:DP:GQ:PL    0/1:21,17:38:99:524,0,693
3    149485901    rs3839072    T    TG    428.58    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.137;DB;DP=23;FS=1.792;HRun=4;HaplotypeScore=60.3465;IndelType=I;MQ=59.94;MQ0=0;MQRankSum=1.402;QD=18.63;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383050    GT:AD:DP:GQ:PL    0/1:10,13:23:99:468,0,239
3    149488309    rs7630033    A    G    649.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383050    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:682,57,0
3    149488442    rs7630153    A    G    1997.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_AMINO_ACID_CHANGE=D157;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_149488347_149488461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKUB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383050    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2030,153,0
3    149497981    rs141785874    C    T    68.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.56;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481585    GT:AD:DP:GQ:PL    0/1:5,3:8:98.44:98,0,184
3    149510262    rs4681554    A    G    489.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481585    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:523,39,0
3    149613232    rs3856613    ATT    A    311.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;DB;DP=29;FS=0.0;HRun=18;HaplotypeScore=240.8799;IndelType=D;MQ=56.95;MQ0=0;MQRankSum=2.019;QD=10.38;ReadPosRankSum=-0.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344229    GT:AD:DP:GQ:PL    1/1:15,12:29:33.22:354,33,0
3    149613249    .    TTG    T    92.95    PASS    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=3.237;DP=38;FS=15.413;HRun=0;HaplotypeScore=282.171;IndelType=D;MQ=57.67;MQ0=0;MQRankSum=-0.58;QD=2.38;ReadPosRankSum=1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344229    GT:AD:DP:GQ:PL    0/1:33,6:38:99:132,0,427
3    149678534    rs6768054    C    T    1660.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.51;MQ0=0;QD=35.32;SNPEFF_AMINO_ACID_CHANGE=H144;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_149678527_149679913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361785    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1693,123,0
3    149686366    rs75169519    AAC    A    2106.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=0;HaplotypeScore=384.9577;IndelType=D;MQ=60.54;MQ0=0;QD=27.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239940    GT:AD:DP:GQ:PL    1/1:28,50:78:99:2148,186,0
3    149686367    rs61268501    AC    A    858.66    PASS    AB=0.94;AC=1;AF=0.50;AN=2;BaseQRankSum=2.834;DB;DP=78;FS=6.885;HRun=1;HaplotypeScore=448.2284;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=0.343;QD=11.01;ReadPosRankSum=5.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239940    GT:AD:DP:GQ:PL    0/1:73,5:78:47.45:898,0,47
3    149686507    rs4425205    T    C    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239940    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
3    150128154    rs61734437    T    C    229.44    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=5.332;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=17.65;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=P339;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_150126122_150129095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC22D2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361136    GT:AD:DP:GQ:PL    0/1:5,8:13:99:259,0,161
3    150128994    rs34647320    T    G    653.75    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.553;DB;DP=53;Dels=0.0;FS=2.422;HRun=1;HaplotypeScore=0.8321;MQ=58.68;MQ0=0;MQRankSum=2.798;QD=12.33;ReadPosRankSum=-0.349;SNPEFF_AMINO_ACID_CHANGE=P619;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_150126122_150129095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC22D2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361136    GT:AD:DP:GQ:PL    0/1:26,27:53:99:684,0,795
3    150129171    rs5853476    A    AT    606.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=2;HaplotypeScore=38.4103;IndelType=I;MQ=59.92;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC22D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361136    GT:AD:DP:GQ:PL    1/1:1,16:17:45.15:648,45,0
3    150264003    rs1130834    G    C    230.35    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=17.72;ReadPosRankSum=0.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491195    GT:AD:DP:GQ:PL    0/1:3,10:13:91.02:260,0,91
3    150264428    rs6790726    T    C    512.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491195    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:546,42,0
3    150270077    rs12330655    C    G    993.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273435    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1027,78,0
3    150276151    .    A    AT    158.83    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=3.663;DP=26;FS=0.0;HRun=0;HaplotypeScore=110.6614;IndelType=I;MQ=59.11;MQ0=0;MQRankSum=0.553;QD=6.11;ReadPosRankSum=-0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273435    GT:AD:DP:GQ:PL    0/1:17,9:26:99:198,0,566
3    150280206    rs5853482    CA    C    34.48    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;FS=0.0;HRun=13;HaplotypeScore=66.5482;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=2.87;ReadPosRankSum=-1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463863    GT:AD:DP:GQ:PL    0/1:7,5:12:73.50:74,0,168
3    150280253    rs4343650    A    T    487.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.708;DB;DP=37;Dels=0.0;FS=5.473;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.234;QD=13.19;ReadPosRankSum=-0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463863    GT:AD:DP:GQ:PL    0/1:15,20:37:99:518,0,419
3    150280445    rs1132979    C    G    1172.74    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=59.7;MQ0=0;MQRankSum=0.937;QD=14.66;ReadPosRankSum=-0.857;SNPEFF_AMINO_ACID_CHANGE=T72S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_150280329_150280447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000487799    GT:AD:DP:GQ:PL    0/1:37,43:80:99:1203,0,1208
3    150280506    rs5853483    GA    G    567.66    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=4.536;DB;DP=39;FS=0.0;HRun=5;HaplotypeScore=145.4588;IndelType=D;MQ=59.95;MQ0=0;MQRankSum=0.319;QD=14.56;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463863    GT:AD:DP:GQ:PL    0/1:18,21:39:99:607,0,419
3    150285520    rs2293151    T    C    482.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.019;QD=15.07;ReadPosRankSum=-1.263;SNPEFF_AMINO_ACID_CHANGE=D111;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_150285480_150285553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406576    GT:AD:DP:GQ:PL    0/1:16,16:32:99:512,0,486
3    150285664    rs2293150    A    G    1172.79    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=98;Dels=0.0;FS=0.822;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.207;QD=11.97;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469331    GT:AD:DP:GQ:PL    0/1:54,44:98:99:1203,0,1550
3    150286210    rs1915945    A    T    154.58    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.811;QD=11.89;ReadPosRankSum=1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472926    GT:AD:DP:GQ:PL    0/1:6,7:13:99:185,0,210
3    150321015    rs2276759    G    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-392O18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480740    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
3    150332199    rs1568586    T    G    221.05    PASS    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.49;MQ0=0;MQRankSum=0.744;QD=15.79;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-392O18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471696    GT:AD:DP:GQ:PL    0/1:1,13:14:3.95:250,0,4
3    150340114    rs2177148    A    G    129.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-392O18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471696    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
3    150341164    rs13097283    T    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-392O18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471696    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    150342895    rs1464517    T    C    56.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-392O18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471696    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:88,9,0
3    150384807    rs6440691    T    G    1898.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM194A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295910    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1931,144,0
3    150398810    rs58101508    C    T    97.22    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=7.48;ReadPosRankSum=-1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM194A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295910    GT:AD:DP:GQ:PL    0/1:9,4:13:99:127,0,324
3    150420023    .    A    AC    166.42    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DP=21;FS=3.282;HRun=8;HaplotypeScore=158.7533;IndelType=I;MQ=49.39;MQ0=0;MQRankSum=0.38;QD=7.92;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM194A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295910    GT:AD:DP:GQ:PL    0/1:14,7:21:99:205,0,100
3    150588715    rs3732752    A    T    84.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=15;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=5.62;ReadPosRankSum=-1.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-166N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397891    GT:AD:DP:GQ:PL    0/1:9,6:15:99:114,0,316
3    150603248    rs57919280    G    GAAAAGC    1277.61    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.274;DB;DP=43;FS=5.551;HRun=0;HaplotypeScore=197.3592;IndelType=I;MQ=52.57;MQ0=0;MQRankSum=-4.445;QD=29.71;ReadPosRankSum=2.683;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=CLRN1-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476886    GT:AD:DP:GQ:PL    0/1:29,14:43:99:1317,0,1870
3    150635538    rs11408971    C    CA    515.88    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.651;DB;DP=45;FS=11.385;HRun=6;HaplotypeScore=104.3657;IndelType=I;MQ=60.21;MQ0=0;MQRankSum=0.258;QD=11.21;ReadPosRankSum=0.693;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC020636.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410147    GT:AD:DP:GQ:PL    0/1:27,19:45:99:555,0,553
3    150661472    rs6764540    A    T    503.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=38.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295911    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:536,39,0
3    150661495    rs6801898    T    C    197.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=16;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.053;QD=12.37;ReadPosRankSum=-1.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295911    GT:AD:DP:GQ:PL    0/1:8,8:16:99:228,0,287
3    150690566    rs3796240    T    C    416.26    PASS    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.274;QD=27.75;ReadPosRankSum=-0.594;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328863    GT:AD:DP:GQ:PL    0/1:2,13:15:37.26:446,0,37
3    150804835    rs144250947    C    G    163.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=16.37;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:4,6:10:86.31:194,0,86
3    150804908    rs7653870    T    G    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
3    150834015    rs4680158    G    A    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
3    150845574    rs1897296    C    T    322.53    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=25;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.952;QD=12.9;ReadPosRankSum=1.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469768    GT:AD:DP:GQ:PL    0/1:13,12:25:99:353,0,435
3    150883777    rs34434571    A    AT    470.74    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.791;DB;DP=45;FS=0.0;HRun=9;HaplotypeScore=106.1642;IndelType=I;MQ=59.04;MQ0=0;MQRankSum=0.464;QD=10.46;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:26,18:45:99:510,0,401
3    150903122    rs16863238    G    A    342.78    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=31;Dels=0.0;FS=9.037;HRun=0;HaplotypeScore=0.6651;MQ=58.64;MQ0=0;MQRankSum=1.06;QD=11.06;ReadPosRankSum=1.244;SNPEFF_AMINO_ACID_CHANGE=A360;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_150903117_150903248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:18,13:31:99:373,0,432
3    150906062    rs76391037    C    T    197.39    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.784;QD=10.39;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:11,8:19:99:227,0,408
3    150906420    rs60749276    C    A    438.71    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.534;QD=19.94;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:9,13:22:99:469,0,300
3    150908844    rs2141630    G    A    82.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    150910640    rs1231520    G    C    448.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR171;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309180    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:482,39,0
3    150910659    rs75144949    G    A    138.16    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=10.63;ReadPosRankSum=-1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR171;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309180    GT:AD:DP:GQ:PL    0/1:7,6:13:99:168,0,199
3    150911405    rs3732755    T    C    1139.28    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.158;DB;DP=81;Dels=0.0;FS=0.873;HRun=0;HaplotypeScore=1.5226;MQ=59.77;MQ0=0;MQRankSum=-1.772;QD=14.07;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=Y559;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_150911277_150911453;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:35,45:81:99:1169,0,1100
3    150916129    rs11431846    G    GT    172.76    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.116;DB;DP=28;FS=3.01;HRun=14;HaplotypeScore=152.5006;IndelType=I;MQ=57.89;MQ0=0;MQRankSum=1.182;QD=6.17;ReadPosRankSum=0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR171;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480322    GT:AD:DP:GQ:PL    0/1:15,11:28:99:212,0,146
3    150916327    rs3732756    T    C    876.90    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=75;Dels=0.0;FS=0.922;HRun=0;HaplotypeScore=0.7887;MQ=59.38;MQ0=0;MQRankSum=-1.375;QD=11.69;ReadPosRankSum=0.175;SNPEFF_AMINO_ACID_CHANGE=I283V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_150915619_150917226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR171;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309180    GT:AD:DP:GQ:PL    0/1:40,35:75:99:907,0,1240
3    150917000    rs3773614    T    G    1123.12    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.497;DB;DP=70;Dels=0.0;FS=2.063;HRun=1;HaplotypeScore=0.734;MQ=59.13;MQ0=0;MQRankSum=0.174;QD=16.04;ReadPosRankSum=-0.415;SNPEFF_AMINO_ACID_CHANGE=T58;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_150915619_150917226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR171;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309180    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1153,0,950
3    151012497    rs2242353    T    C    1220.38    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.434;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9733;MQ=59.62;MQ0=0;MQRankSum=0.388;QD=12.58;ReadPosRankSum=-0.277;SNPEFF_AMINO_ACID_CHANGE=L179;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151011891_151012999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260843    GT:AD:DP:GQ:PL    0/1:54,43:97:99:1250,0,1708
3    151045661    rs1491980    G    C    624.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=39.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:657,48,0
3    151046308    rs1466684    G    A    2221.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.65;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=T179M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151044100_151046795;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325602    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2255,163,0
3    151046604    rs3732757    G    T    1478.52    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DB;DP=95;Dels=0.0;FS=0.831;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=0.877;QD=15.56;ReadPosRankSum=0.892;SNPEFF_AMINO_ACID_CHANGE=I80;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151044100_151046795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325602    GT:AD:DP:GQ:PL    0/1:48,47:95:99:1509,0,1475
3    151056598    rs6809699    A    C    1037.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=G12;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151055168_151056647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302632    GT:AD:DP:GQ:PL    1/1:0,31:31:81.24:1070,81,0
3    151056616    rs6785930    G    A    298.07    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=29;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=-2.192;QD=10.28;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=N6;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151055168_151056647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302632    GT:AD:DP:GQ:PL    0/1:17,12:29:99:328,0,533
3    151073033    rs7615865    T    C    1746.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=34.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468305    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1779,129,0
3    151073937    rs1994730    T    C    106.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468305    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
3    151073997    rs6808091    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468305    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    151074925    rs3732759    A    G    531.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=37.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468305    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:564,42,0
3    151074941    rs3732760    A    C    744.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468305    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:778,57,0
3    151078026    rs1873622    C    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491549    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
3    151082630    rs3732762    T    A    253.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
3    151085578    rs3732764    C    A    2487.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=59.37;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2521,184,0
3    151098218    rs9868840    G    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    151103070    rs4603933    T    G    495.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:529,39,0
3    151112568    rs3732768    G    A    1040.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.127;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.56;MQ0=0;MQRankSum=-0.51;QD=10.95;ReadPosRankSum=2.277;SNPEFF_AMINO_ACID_CHANGE=S1736;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151112444_151112655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:57,38:95:99:1070,0,1742
3    151126834    rs3732769    C    G    87.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
3    151128895    rs10935844    T    G    36.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.08;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:2,2:4:66.32:66,0,72
3    151128973    rs16863368    C    G    138.76    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=12.61;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273432    GT:AD:DP:GQ:PL    0/1:4,7:11:99:169,0,138
3    151154666    rs2172250    T    C    1836.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=T2561;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151151282_151156385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282466    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1870,147,0
3    151155620    rs6781302    G    A    2806.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=N2243;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151151282_151156385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282466    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2840,211,0
3    151161112    rs12487205    A    G    910.07    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.947;DB;DP=58;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.093;QD=15.69;ReadPosRankSum=1.98;SNPEFF_AMINO_ACID_CHANGE=Y1875H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151160772_151161672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282466    GT:AD:DP:GQ:PL    0/1:28,30:58:99:940,0,786
3    151165678    rs9871952    T    C    1329.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.36;MQ0=0;QD=36.92;SNPEFF_AMINO_ACID_CHANGE=Q697;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151162707_151167053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282466    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1362,102,0
3    151166058    rs17204557    G    A    744.99    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=55;Dels=0.0;FS=7.533;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.806;QD=13.55;ReadPosRankSum=-0.144;SNPEFF_AMINO_ACID_CHANGE=P571S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151162707_151167053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282466    GT:AD:DP:GQ:PL    0/1:31,24:55:99:775,0,1010
3    151166422    rs6798252    C    T    816.01    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.104;DB;DP=61;Dels=0.0;FS=4.209;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=13.38;ReadPosRankSum=0.422;SNPEFF_AMINO_ACID_CHANGE=Q449;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151162707_151167053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282466    GT:AD:DP:GQ:PL    0/1:32,29:61:99:846,0,1124
3    151171439    rs7619322    A    C    1418.83    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.504;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7303;MQ=59.48;MQ0=0;MQRankSum=0.754;QD=12.23;ReadPosRankSum=-0.851;SNPEFF_AMINO_ACID_CHANGE=Y150D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151171172_151171562;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282466    GT:AD:DP:GQ:PL    0/1:61,55:116:99:1449,0,1870
3    151171542    rs7621591    A    G    4389.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=36.27;SNPEFF_AMINO_ACID_CHANGE=N115;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151171172_151171562;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282466    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4389,316,0
3    151463421    rs1972977    G    T    1354.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.107;DB;DP=108;Dels=0.0;FS=3.145;HRun=2;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-0.511;QD=12.54;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=A186S;SNPEFF_CODON_CHANGE=Gcg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151463297_151463468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AADACL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356517    GT:AD:DP:GQ:PL    0/1:60,48:108:99:1385,0,1848
3    151531894    rs2293004    C    T    828.79    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.378;DB;DP=53;Dels=0.0;FS=5.105;HRun=0;HaplotypeScore=1.5678;MQ=60.0;MQ0=0;MQRankSum=1.111;QD=15.64;ReadPosRankSum=-1.606;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_151531825_151532088;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232892    GT:AD:DP:GQ:PL    0/1:24,29:53:99:859,0,822
3    151535422    rs2271942    G    A    549.18    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.782;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.501;QD=17.72;ReadPosRankSum=1.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232892    GT:AD:DP:GQ:PL    0/1:13,18:31:99:579,0,450
3    151542362    rs12491139    C    A    108.80    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=0.55;QD=15.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232892    GT:AD:DP:GQ:PL    0/1:3,4:7:99:139,0,104
3    151542408    rs3073271    AAAAC    A    286.64    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=68.6198;IndelType=D;MQ=63.82;MQ0=0;MQRankSum=1.769;QD=26.06;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232892    GT:AD:DP:GQ:PL    0/1:4,7:11:99:326,0,265
3    151542737    rs13098550    G    A    89.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-1.92;QD=11.24;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488869    GT:AD:DP:GQ:PL    0/1:3,5:8:99:120,0,104
3    151545318    rs77824541    A    T    164.71    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.255;DB;DP=44;Dels=0.0;FS=5.857;HRun=4;HaplotypeScore=0.9996;MQ=59.48;MQ0=0;MQRankSum=1.307;QD=3.74;ReadPosRankSum=0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488869    GT:AD:DP:GQ:PL    0/1:26,18:44:99:195,0,856
3    151545321    rs113024766    GT    G    435.07    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=5.278;DB;DP=47;FS=0.0;HRun=4;HaplotypeScore=267.9551;IndelType=D;MQ=59.74;MQ0=0;MQRankSum=-0.686;QD=9.26;ReadPosRankSum=0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488869    GT:AD:DP:GQ:PL    0/1:29,18:47:99:474,0,1038
3    151545601    rs1803155    G    A    980.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=72;Dels=0.0;FS=6.407;HRun=0;HaplotypeScore=0.9665;MQ=59.16;MQ0=0;MQRankSum=-0.229;QD=13.62;ReadPosRankSum=-2.074;SNPEFF_AMINO_ACID_CHANGE=V281I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_151545364_151546272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000232892    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1010,0,1139
3    151546041    rs1042201    G    A    95.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=15.88;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488869    GT:AD:DP:GQ:PL    0/1:2,4:6:66.42:125,0,66
3    152150337    rs6804771    T    G    93.86    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.212;QD=7.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MBNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282486    GT:AD:DP:GQ:PL    0/1:8,5:13:99:124,0,282
3    153839866    rs12493885    G    C    649.07    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.072;DB;DP=48;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=4.8965;MQ=59.03;MQ0=0;MQRankSum=1.072;QD=13.52;ReadPosRankSum=-0.49;SNPEFF_AMINO_ACID_CHANGE=V29L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_153839731_153840864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    0/1:18,28:48:99:679,0,538
3    153842161    rs66618151    CT    C    54.95    QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.308;DB;DP=67;FS=0.0;HRun=18;HaplotypeScore=568.5023;IndelType=D;MQ=48.2;MQ0=0;MQRankSum=0.199;QD=0.82;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    0/1:50,11:67:93.98:94,0,526
3    153842179    .    TA    T    98.66    QDFilter2    AB=0.92;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DP=69;FS=20.007;HRun=1;HaplotypeScore=549.5111;IndelType=D;MQ=48.58;MQ0=0;MQRankSum=-0.672;QD=1.43;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    0/1:63,5:69:99:138,0,731
3    153847582    rs1626280    T    A    520.25    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.677;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.59;QD=15.3;ReadPosRankSum=-1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    0/1:15,19:34:99:550,0,542
3    153867036    rs10541456    AAATT    A    169.65    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=2.731;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=83.177;IndelType=D;MQ=54.55;MQ0=0;MQRankSum=-1.157;QD=8.48;ReadPosRankSum=-1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    0/1:14,6:20:99:209,0,1069
3    153870407    rs1727957    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    153870511    rs1727956    G    A    208.35    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=19;Dels=0.0;FS=3.757;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.94;QD=10.97;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    0/1:11,8:19:99:238,0,394
3    153970796    rs355752    A    G    489.19    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=21.27;ReadPosRankSum=0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    0/1:8,15:23:99:519,0,251
3    153972500    rs355749    T    C    2501.65    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=191;Dels=0.0;FS=18.441;HRun=0;HaplotypeScore=1.565;MQ=59.64;MQ0=0;MQRankSum=1.178;QD=13.1;ReadPosRankSum=1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356448    GT:AD:DP:GQ:PL    0/1:96,95:191:99:2532,0,2869
3    153973408    rs3172332    T    C    231.84    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.065;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.666;QD=12.88;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465817    GT:AD:DP:GQ:PL    0/1:8,10:18:99:262,0,270
3    154000755    rs714484    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481332    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    154002357    rs71958296    A    AT    122.91    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.858;DB;DP=23;FS=0.0;HRun=12;HaplotypeScore=54.4114;IndelType=I;MQ=60.93;MQ0=0;MQRankSum=0.454;QD=5.34;ReadPosRankSum=-0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481332    GT:AD:DP:GQ:PL    0/1:15,7:23:99:162,0,184
3    154007682    rs355758    G    C    136.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.614;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=9.75;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308361    GT:AD:DP:GQ:PL    0/1:8,6:14:99:167,0,250
3    154010515    rs113203999    AACACAC    A    341.87    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=201.996;IndelType=D;MQ=51.49;MQ0=0;MQRankSum=-3.532;QD=10.68;ReadPosRankSum=0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308361    GT:AD:DP:GQ:PL    0/1:22,7:32:99:381,0,812
3    154018690    rs3732652    G    A    592.33    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=5.344;DB;DP=43;Dels=0.0;FS=2.356;HRun=0;HaplotypeScore=1.9945;MQ=59.57;MQ0=0;MQRankSum=0.183;QD=13.78;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460875    GT:AD:DP:GQ:PL    0/1:24,19:43:99:622,0,697
3    154021063    rs355756    G    A    275.48    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.955;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.722;QD=11.98;ReadPosRankSum=-0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460875    GT:AD:DP:GQ:PL    0/1:12,11:23:99:305,0,377
3    154801832    rs56208271    G    A    159.73    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.749;QD=14.52;ReadPosRankSum=-0.825;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000462837    GT:AD:DP:GQ:PL    0/1:5,6:11:99:190,0,174
3    154834379    rs10522735    G    GTATATATATA    874.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=174.3118;IndelType=I;MQ=47.0;MQ0=0;QD=41.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473730    GT:AD:DP:GQ:PL    1/1:13,5:21:29.77:916,30,0
3    154855722    rs142771935    ACTGT    A    714.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=73.9913;IndelType=D;MQ=52.33;MQ0=0;QD=54.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360490    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:756,39,0
3    154862390    rs6797911    T    A    317.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360490    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:351,27,0
3    154866453    rs1436633    T    C    2483.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;DB;DP=78;Dels=0.0;FS=6.133;HRun=1;HaplotypeScore=2.5613;MQ=60.0;MQ0=0;MQRankSum=0.355;QD=31.84;ReadPosRankSum=-1.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360490    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2517,157,0
3    154866545    rs1436632    A    C    353.55    PASS    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.736;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.496;QD=25.25;ReadPosRankSum=-1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360490    GT:AD:DP:GQ:PL    0/1:1,13:14:3.54:383,0,4
3    154878158    rs35450782    GA    G    4848.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;FS=0.0;HRun=3;HaplotypeScore=336.8425;IndelType=D;MQ=60.08;MQ0=0;QD=41.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360490    GT:AD:DP:GQ:PL    1/1:2,116:118:99:4849,349,0
3    154890206    rs3816803    G    A    789.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495577    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:822,63,0
3    154890512    rs72530325    C    CT    87.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=13;FS=0.0;HRun=14;HaplotypeScore=82.2502;IndelType=I;MQ=57.59;MQ0=0;MQRankSum=0.742;QD=6.75;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495577    GT:AD:DP:GQ:PL    1/1:7,5:13:1.59:126,2,0
3    155205993    rs63670961    C    CT    108.32    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=14;FS=0.0;HRun=11;HaplotypeScore=59.9732;IndelType=I;MQ=59.53;MQ0=0;MQRankSum=0.143;QD=7.74;ReadPosRankSum=-1.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469040    GT:AD:DP:GQ:PL    0/1:8,6:14:82.81:147,0,83
3    155212325    rs11385637    G    GA    1192.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=6;HaplotypeScore=83.2481;IndelType=I;MQ=60.6;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    1/1:5,31:36:99:1234,99,0
3    155241593    rs9840061    A    G    821.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:854,72,0
3    155241740    rs9840234    A    G    3368.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.08;SNPEFF_AMINO_ACID_CHANGE=S442;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_155241686_155241793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3368,262,0
3    155241885    rs6440996    G    A    275.89    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=13.14;ReadPosRankSum=1.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    0/1:11,10:21:99:306,0,400
3    155241900    rs6440997    G    A    265.15    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=22.1;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    0/1:4,8:12:99:295,0,129
3    155267460    rs359542    T    A    37.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.6;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    0/1:2,3:5:67.97:68,0,71
3    155271825    rs359549    G    A    399.56    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=3.594;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=11.1;ReadPosRankSum=-0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    0/1:21,15:36:99:430,0,577
3    155272203    rs359550    G    A    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    155282570    rs2304406    T    A    130.75    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=18.68;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    0/1:2,5:7:61.93:161,0,62
3    155285836    rs498378    C    G    48.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    155314034    rs359569    A    G    2043.90    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=156;Dels=0.0;FS=0.62;HRun=0;HaplotypeScore=3.1564;MQ=59.56;MQ0=0;MQRankSum=0.196;QD=13.1;ReadPosRankSum=1.731;SNPEFF_AMINO_ACID_CHANGE=S41;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_155314021_155314167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334686    GT:AD:DP:GQ:PL    0/1:84,72:156:99:2074,0,2318
3    155481609    rs7653384    G    A    940.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.987;DB;DP=64;Dels=0.0;FS=18.587;HRun=1;HaplotypeScore=0.9997;MQ=59.42;MQ0=0;MQRankSum=0.638;QD=14.69;ReadPosRankSum=0.262;SNPEFF_AMINO_ACID_CHANGE=Y151;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_155480401_155481707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534941    GT:AD:DP:GQ:PL    0/1:32,32:64:99:970,0,1042
3    155485302    rs358733    C    T    1439.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=S117N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_155485298_155485458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C3orf33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534941    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1473,108,0
3    155551990    rs6809229    G    A    129.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC33A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359479    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
3    155611557    rs6441026    T    G    989.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295920    GT:AD:DP:GQ:PL    1/1:0,31:32:81.23:1022,81,0
3    155636795    rs3821365    A    T    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=13.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295920    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
3    155654017    rs10804774    C    T    774.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295920    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:807,60,0
3    155654432    rs3772113    T    A    584.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295920    GT:AD:DP:GQ:PL    1/1:0,22:22:60.13:617,60,0
3    155744312    rs34533513    T    G    1762.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=AC067721.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449668    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1795,138,0
3    155746822    rs4680229    T    C    1034.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.752;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=AC067721.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449668    GT:AD:DP:GQ:PL    1/1:0,33:33:90.23:1068,90,0
3    155755221    rs9810320    A    G    2054.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.7;MQ0=0;QD=33.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472028    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2087,163,0
3    155761761    rs112901208    C    CT    72.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;FS=0.0;HRun=14;HaplotypeScore=55.8756;IndelType=I;MQ=49.37;MQ0=0;MQRankSum=-0.736;QD=12.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472028    GT:AD:DP:GQ:PL    0/1:1,5:6:1.21:111,0,1
3    155838286    .    A    G    32.69    QDFilter2    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.739;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.0376;MQ=43.14;MQ0=0;MQRankSum=-2.852;QD=0.71;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472028    GT:AD:DP:GQ:PL    0/1:15,31:46:62.68:63,0,174
3    155838900    rs1488425    A    G    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389636    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    156009614    rs2290165    A    G    377.09    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.736;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.423;QD=16.4;ReadPosRankSum=0.846;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389636    GT:AD:DP:GQ:PL    0/1:7,15:23:99:407,0,221
3    156009925    rs1551066    C    T    390.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.469;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.069;QD=13.95;ReadPosRankSum=1.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302490    GT:AD:DP:GQ:PL    0/1:14,14:28:99:421,0,359
3    156249407    rs2280030    G    C    774.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302490    GT:AD:DP:GQ:PL    1/1:0,26:26:69.19:808,69,0
3    156266642    rs6809188    C    T    610.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265044    GT:AD:DP:GQ:PL    1/1:0,18:19:48.16:643,48,0
3    156266880    rs3773716    C    T    268.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265044    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:302,24,0
3    156395329    rs345986    G    T    65.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.88;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPARP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295924    GT:AD:DP:GQ:PL    0/1:3,3:6:95.26:95,0,95
3    156411732    rs193197    A    G    282.83    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-2.218;QD=13.47;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPARP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295924    GT:AD:DP:GQ:PL    0/1:11,10:21:99:313,0,405
3    156413615    rs10631452    C    CT    362.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.678;DB;DP=30;FS=0.0;HRun=17;HaplotypeScore=262.9312;IndelType=I;MQ=43.04;MQ0=0;MQRankSum=-0.377;QD=12.07;ReadPosRankSum=1.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPARP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295924    GT:AD:DP:GQ:PL    1/1:18,9:30:54.01:404,54,0
3    156413633    rs112709851    G    C    152.15    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=35;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=7.2811;MQ=45.85;MQ0=0;MQRankSum=0.597;QD=4.35;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPARP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295924    GT:AD:DP:GQ:PL    0/1:4,7:35:99:182,0,105
3    156413918    rs344016    T    C    464.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPARP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295924    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:498,39,0
3    156422307    rs344052    T    C    79.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=26.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPARP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473702    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
3    156431750    rs61733487    A    G    1705.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=31.65;MQ0=6;QD=21.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=METTL15P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447575    GT:AD:DP:GQ:PL    1/1:0,80:80:99:1739,147,0
3    156544584    rs344071    C    T    1657.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEKR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356539    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1691,132,0
3    156711205    rs77626414    T    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEKR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356539    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
3    156867776    rs76269282    G    GAA    2610.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.328;DB;DP=64;FS=0.0;HRun=8;HaplotypeScore=174.8571;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=-0.231;QD=40.8;ReadPosRankSum=1.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464575    GT:AD:DP:GQ:PL    1/1:5,56:64:99:2653,146,0
3    156870059    rs73154633    C    T    2690.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295925    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2724,202,0
3    156870816    rs41272613    A    G    2275.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8857;MQ=59.7;MQ0=0;QD=36.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295925    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2309,169,0
3    156876502    rs6441114    G    A    127.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466101    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
3    156876574    rs6441115    A    G    396.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466101    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:430,33,0
3    156876803    rs6441116    T    G    693.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295925    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:727,54,0
3    156877276    rs35011625    CAA    C    1671.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DB;DP=42;FS=0.0;HRun=2;HaplotypeScore=206.7169;IndelType=D;MQ=58.14;MQ0=0;MQRankSum=1.368;QD=39.8;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295925    GT:AD:DP:GQ:PL    1/1:1,41:42:53.37:1713,53,0
3    156877357    rs10936061    T    C    142.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=50.18;MQ0=0;QD=15.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295925    GT:AD:DP:GQ:PL    1/1:0,9:9:15.04:176,15,0
3    156877530    rs12635088    G    A    123.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295925    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
3    156978919    rs35386937    A    AT    2612.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=1;HaplotypeScore=151.3845;IndelType=I;MQ=59.79;MQ0=0;QD=41.47;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362010    GT:AD:DP:GQ:PL    1/1:2,61:63:99:2654,178,0
3    156983273    rs3749214    A    G    1097.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5773;MQ=59.5;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362010    GT:AD:DP:GQ:PL    1/1:0,36:37:87.28:1131,87,0
3    156983414    rs7652298    T    C    2040.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_AMINO_ACID_CHANGE=K677;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_156983315_156983451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392833    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2074,157,0
3    157004141    rs4680352    G    A    1278.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362010    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1311,102,0
3    157004323    rs4680353    A    C    7526.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=238;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5173;MQ=59.9;MQ0=0;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362010    GT:AD:DP:GQ:PL    1/1:1,236:238:99:7526,575,0
3    157260961    rs6441135    T    G    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312275    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
3    157817517    rs9833383    A    G    214.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554685    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
3    157820423    rs4462902    C    T    465.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554685    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:498,39,0
3    158178856    rs73172119    G    A    785.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471994    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:818,60,0
3    158254806    rs73154326    A    G    659.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295930    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:693,54,0
3    158308875    rs2566339    T    C    1106.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355893    GT:AD:DP:GQ:PL    1/1:0,35:35:87.27:1139,87,0
3    158308947    .    TC    T    111.02    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.608;DP=21;FS=31.46;HRun=1;HaplotypeScore=163.7308;IndelType=D;MQ=57.38;MQ0=0;MQRankSum=-1.096;QD=5.29;ReadPosRankSum=-1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355893    GT:AD:DP:GQ:PL    0/1:12,9:21:99:150,0,198
3    158310153    rs6771248    A    G    741.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355893    GT:AD:DP:GQ:PL    1/1:0,23:23:60.15:774,60,0
3    158310483    rs6780477    G    T    274.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355893    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:307,24,0
3    158314810    rs45471897    C    G    199.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=24.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355893    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:232,18,0
3    158314846    rs55999561    A    G    136.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355893    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
3    158318015    rs2639656    C    T    1115.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466246    GT:AD:DP:GQ:PL    1/1:0,31:31:87.26:1148,87,0
3    158320597    rs4875    T    C    972.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_AMINO_ACID_CHANGE=S116;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_158320596_158320728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000491767    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:1006,75,0
3    158320703    rs77911695    C    A    1326.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=P152T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_158320596_158320728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000491767    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1360,102,0
3    158362441    rs1864507    T    C    176.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=25.17;SNPEFF_AMINO_ACID_CHANGE=A6;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_158362386_158362504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264263    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:209,18,0
3    158366900    rs2303909    G    A    2457.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_AMINO_ACID_CHANGE=V215I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_158366830_158366946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264263    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2491,184,0
3    158378847    rs2291595    A    G    838.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312756    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:872,69,0
3    158384883    rs4680455    C    A    197.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490261    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:230,18,0
3    158388780    rs8455    T    C    694.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.156;QD=28.95;ReadPosRankSum=-1.445;SNPEFF_AMINO_ACID_CHANGE=H53R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_158388746_158388808;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LXN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264265    GT:AD:DP:GQ:PL    1/1:1,23:24:20.19:728,20,0
3    158415344    rs1051109    T    C    501.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.77;MQ0=0;QD=35.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264263    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:534,42,0
3    158415402    rs10577754    TAGA    T    1719.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=200.3754;IndelType=D;MQ=54.4;MQ0=0;QD=44.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARRES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462663    GT:AD:DP:GQ:PL    1/1:3,36:39:99:1761,108,0
3    158422506    rs4680457    G    A    549.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARRES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471444    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:583,42,0
3    158428809    rs3830357    A    AAGGC    377.47    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=104.4519;IndelType=I;MQ=56.49;MQ0=0;MQRankSum=-1.2;QD=13.98;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARRES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237696    GT:AD:DP:GQ:PL    0/1:21,6:27:99:416,0,316
3    158537415    rs112642724    CTTTTT    C    307.71    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=23;FS=0.0;HRun=16;HaplotypeScore=247.2672;IndelType=D;MQ=42.78;MQ0=0;MQRankSum=-2.963;QD=13.38;ReadPosRankSum=1.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264266    GT:AD:DP:GQ:PL    0/1:13,9:23:99:347,0,510
3    158537431    .    TA    T    145.86    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DP=24;FS=21.444;HRun=1;HaplotypeScore=236.3313;IndelType=D;MQ=43.63;MQ0=0;MQRankSum=-0.732;QD=6.08;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264266    GT:AD:DP:GQ:PL    0/1:17,7:24:99:185,0,263
3    158537443    rs3765083    A    G    323.42    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.715;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.362;MQ=48.32;MQ0=0;MQRankSum=-3.046;QD=10.78;ReadPosRankSum=-0.455;SNPEFF_AMINO_ACID_CHANGE=I144V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_158537438_158537536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361159    GT:AD:DP:GQ:PL    0/1:13,17:30:99:353,0,187
3    158538056    rs4680469    T    C    929.25    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=70;Dels=0.0;FS=6.352;HRun=0;HaplotypeScore=1.5783;MQ=60.0;MQ0=0;MQRankSum=1.627;QD=13.28;ReadPosRankSum=-0.535;SNPEFF_AMINO_ACID_CHANGE=L102;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_158538004_158538115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000477743    GT:AD:DP:GQ:PL    0/1:36,34:70:99:959,0,1157
3    158539294    rs1548092    G    A    450.71    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=29;Dels=0.0;FS=3.08;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.11;QD=15.54;ReadPosRankSum=-1.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489639    GT:AD:DP:GQ:PL    0/1:13,16:29:99:481,0,432
3    158539496    rs41272623    A    G    721.17    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.024;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.445;QD=15.68;ReadPosRankSum=-2.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489639    GT:AD:DP:GQ:PL    0/1:21,25:46:99:751,0,555
3    158970714    rs1020470    T    C    85.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=8.58;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IQCJ-SCHIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471575    GT:AD:DP:GQ:PL    0/1:6,4:10:99:116,0,214
3    158980193    rs1449008    T    A    62.95    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.87;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IQCJ-SCHIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471575    GT:AD:DP:GQ:PL    0/1:5,3:8:92.94:93,0,181
3    158980279    rs1449007    A    G    314.34    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.346;MQ=58.55;MQ0=0;MQRankSum=-1.187;QD=9.82;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IQCJ-SCHIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471575    GT:AD:DP:GQ:PL    0/1:20,12:32:99:344,0,676
3    158980745    rs2621309    G    C    90.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IQCJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481796    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    158991724    rs2621285    A    T    439.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IQCJ-SCHIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337808    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:473,36,0
3    159604214    rs33055    T    C    480.31    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.155;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.199;QD=16.56;ReadPosRankSum=-0.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCHIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461058    GT:AD:DP:GQ:PL    0/1:12,17:29:99:510,0,412
3    159614478    rs9812520    A    G    291.79    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.898;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.054;QD=7.89;ReadPosRankSum=-0.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IQCJ-SCHIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460298    GT:AD:DP:GQ:PL    0/1:24,13:37:99:322,0,780
3    159712993    rs2243135    G    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480088    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:75,0,32
3    159713087    rs2243136    T    C    335.05    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.55;MQ0=0;MQRankSum=1.763;QD=20.94;ReadPosRankSum=1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480088    GT:AD:DP:GQ:PL    0/1:4,12:16:99:365,0,125
3    159976432    rs72196436    G    GA    143.09    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.68;DB;DP=37;FS=2.572;HRun=10;HaplotypeScore=95.2974;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=-0.51;QD=3.87;ReadPosRankSum=0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326448    GT:AD:DP:GQ:PL    0/1:27,8:37:99:182,0,535
3    159994945    rs10936199    T    C    61.52    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.956;QD=7.69;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326448    GT:AD:DP:GQ:PL    0/1:5,3:8:91.51:92,0,177
3    159995356    rs3737214    A    G    1046.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.535;DB;DP=63;Dels=0.0;FS=9.128;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.646;QD=16.62;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326448    GT:AD:DP:GQ:PL    0/1:27,36:63:99:1077,0,782
3    159997061    rs6778728    T    A    919.80    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.288;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.415;QD=18.77;ReadPosRankSum=-0.245;SNPEFF_AMINO_ACID_CHANGE=T449S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_159996981_159997152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000483465    GT:AD:DP:GQ:PL    0/1:19,30:49:99:950,0,578
3    160021681    rs4680576    G    A    568.56    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.0;DB;DP=46;Dels=0.0;FS=1.256;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.343;QD=12.36;ReadPosRankSum=-0.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461213    GT:AD:DP:GQ:PL    0/1:20,26:46:99:599,0,554
3    160025287    rs6790951    C    T    125.77    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.532;QD=11.43;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326448    GT:AD:DP:GQ:PL    0/1:5,6:11:99:156,0,182
3    160119525    rs41272947    G    A    123.90    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.78;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344722    GT:AD:DP:GQ:PL    0/1:1,4:5:21.93:154,0,22
3    160130110    rs2305407    G    A    456.60    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.992;DB;DP=40;Dels=0.0;FS=4.859;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.911;QD=11.42;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467468    GT:AD:DP:GQ:PL    0/1:22,18:40:99:487,0,740
3    160131055    rs56322040    G    A    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.64;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467468    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,120
3    160135428    rs1451760    C    T    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392788    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,74
3    160142554    rs41272957    C    T    175.35    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=25.05;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497203    GT:AD:DP:GQ:PL    0/1:1,6:7:21.17:205,0,21
3    160142618    rs11718121    A    C    266.31    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.644;DB;DP=28;Dels=0.0;FS=2.049;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.395;QD=9.51;ReadPosRankSum=-0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497203    GT:AD:DP:GQ:PL    0/1:16,12:28:99:296,0,547
3    160148756    rs7631792    C    T    618    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.095;DB;DP=49;Dels=0.0;FS=1.26;HRun=1;HaplotypeScore=1.7552;MQ=59.15;MQ0=0;MQRankSum=-0.15;QD=12.61;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309784    GT:AD:DP:GQ:PL    0/1:26,23:49:99:648,0,810
3    160156951    rs1141023    C    T    412.81    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.39;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.894;QD=13.32;ReadPosRankSum=-1.85;SNPEFF_AMINO_ACID_CHANGE=E14;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_160156789_160156974;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM59;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000468542    GT:AD:DP:GQ:PL    0/1:16,15:31:99:443,0,492
3    160170373    rs144973441    C    T    115.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=47.52;MQ0=0;MQRankSum=0.0;QD=9.62;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468542    GT:AD:DP:GQ:PL    0/1:6,6:12:99:145,0,188
3    160223032    rs721022    C    T    46.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=11.6;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334256    GT:AD:DP:GQ:PL    0/1:1,3:4:27.95:76,0,28
3    160244073    rs6441322    A    G    424.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334256    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:458,36,0
3    160245948    rs1551190    A    G    178.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=14.85;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334256    GT:AD:DP:GQ:PL    0/1:6,6:12:99:208,0,182
3    160253729    rs2272489    G    A    72.39    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=37.84;MQ0=0;MQRankSum=0.101;QD=5.17;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334256    GT:AD:DP:GQ:PL    0/1:8,6:14:60.62:102,0,61
3    160679744    rs7629001    A    T    723.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295839    GT:AD:DP:GQ:PL    1/1:0,25:25:69.18:757,69,0
3    160939746    rs10530085    CTTTTTTTTTTT    C    294.29    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=16;FS=0.0;HRun=30;HaplotypeScore=292.451;IndelType=D;MQ=34.44;MQ0=0;MQRankSum=-1.256;QD=18.39;ReadPosRankSum=2.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351193    GT:AD:DP:GQ:PL    0/1:9,5:16:99:333,0,941
3    160955879    rs4350933    G    T    630.08    HaplotypeScoreFilter13    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.541;DB;DP=58;Dels=0.0;FS=3.72;HRun=0;HaplotypeScore=45.2223;MQ=55.9;MQ0=0;MQRankSum=-0.352;QD=10.86;ReadPosRankSum=-0.661;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460503    GT:AD:DP:GQ:PL    0/1:36,22:58:99:660,0,1023
3    160955882    rs11344126    CTT    C    196.63    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=3.11;DB;DP=61;FS=0.0;HRun=15;HaplotypeScore=408.3339;IndelType=D;MQ=55.7;MQ0=0;MQRankSum=1.25;QD=3.22;ReadPosRankSum=0.668;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460503    GT:AD:DP:GQ:PL    0/1:37,16:61:99:236,0,1100
3    160964271    rs73026976    G    A    465.80    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=31;Dels=0.0;FS=3.153;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.206;QD=15.03;ReadPosRankSum=-0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351193    GT:AD:DP:GQ:PL    0/1:15,16:31:99:496,0,537
3    160967354    rs4290817    G    A    299.76    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=21;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.643;QD=14.27;ReadPosRankSum=0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351193    GT:AD:DP:GQ:PL    0/1:10,11:21:99:330,0,306
3    161064193    rs339101    A    T    251.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=20.92;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTSSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359175    GT:AD:DP:GQ:PL    0/1:4,8:12:99:281,0,118
3    161146849    rs146519224    GT    G    32.49    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=54.972;IndelType=D;MQ=52.2;MQ0=0;MQRankSum=-1.881;QD=2.5;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-3P17.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438478    GT:AD:DP:GQ:PL    0/1:7,6:12:71.52:72,0,133
3    161220843    .    A    C    272.47    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DP=25;Dels=0.0;FS=1.66;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.217;QD=10.9;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=N183H;SNPEFF_CODON_CHANGE=Aac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_161220814_161221730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327928    GT:AD:DP:GQ:PL    0/1:13,12:25:99:302,0,368
3    161221705    rs3921595    A    C    995    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.459;DB;DP=89;Dels=0.0;FS=8.139;HRun=0;HaplotypeScore=0.8667;MQ=59.74;MQ0=0;MQRankSum=0.656;QD=11.18;ReadPosRankSum=-0.432;SNPEFF_AMINO_ACID_CHANGE=E470A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_161220814_161221730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327928    GT:AD:DP:GQ:PL    0/1:45,44:89:99:1025,0,1393
3    161221848    rs2221514    T    A    123.90    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=15.49;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327928    GT:AD:DP:GQ:PL    0/1:3,5:8:99:154,0,101
3    163234407    rs9290212    T    C    322.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:355,27,0
3    163720122    rs10804809    G    T    71.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.87;ReadPosRankSum=0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-208P4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483240    GT:AD:DP:GQ:PL    0/1:3,3:6:74.09:101,0,74
3    163889059    rs12488423    A    T    240.29    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.471;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.134;QD=10.45;ReadPosRankSum=-0.401;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1263;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408324    GT:AD:DP:GQ:PL    0/1:14,9:23:99:270,0,470
3    163889075    rs12494921    C    T    378.33    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.144;QD=10.81;ReadPosRankSum=-1.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1263;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408324    GT:AD:DP:GQ:PL    0/1:22,13:35:99:408,0,808
3    163889384    rs10936412    T    C    150.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=12.51;ReadPosRankSum=0.583;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1263;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408324    GT:AD:DP:GQ:PL    0/1:6,6:12:99:180,0,211
3    164059123    rs76722974    G    A    212.36    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.067;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.201;QD=14.16;ReadPosRankSum=-1.936;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR720;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408828    GT:AD:DP:GQ:PL    0/1:8,7:15:99:242,0,211
3    164714532    rs4855271    C    T    457.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_AMINO_ACID_CHANGE=M1523I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_164714526_164714560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:491,36,0
3    164733721    rs2290738    G    A    5201.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.69;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,151:151:99:5202,382,0
3    164748665    rs72216643    C    CA    530.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.285;DB;DP=46;FS=2.576;HRun=13;HaplotypeScore=317.1439;IndelType=I;MQ=57.38;MQ0=0;MQRankSum=-0.095;QD=11.54;ReadPosRankSum=-1.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:23,21:46:55.42:573,55,0
3    164751319    rs7611384    T    A    435.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,13:14:36.11:469,36,0
3    164758630    rs13099130    G    A    759.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:793,60,0
3    164761113    rs13073000    A    G    119.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
3    164764719    rs9838509    C    A    807.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=A599;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_164764629_164764800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,25:25:60.20:841,60,0
3    164766807    .    T    TAA    671.16    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=0;HaplotypeScore=161.2591;IndelType=I;MQ=49.5;MQ0=0;QD=55.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:1,11:12:36.12:713,36,0
3    164766808    rs66960807    TC    T    497.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=171.3711;IndelType=D;MQ=49.5;MQ0=0;QD=41.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:1,11:12:36.11:540,36,0
3    164766816    rs9821196    C    A    414.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=23.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,18:18:39.11:447,39,0
3    164766835    rs9841237    T    C    748.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;QD=31.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:781,60,0
3    164767148    rs9290253    T    C    173.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
3    164772957    rs9290256    C    T    2594.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=73;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=5.6992;MQ=59.38;MQ0=0;MQRankSum=-1.059;QD=35.06;ReadPosRankSum=-1.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2627,160,0
3    164773057    rs9290257    G    A    3673.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.482;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.58;MQ0=0;MQRankSum=-0.234;QD=33.1;ReadPosRankSum=-0.047;SNPEFF_AMINO_ACID_CHANGE=N479;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_164772982_164773095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:1,110:111:99:3674,231,0
3    164776647    .    T    TACACACACAC    513.20    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=0;HaplotypeScore=50.6853;IndelType=I;MQ=36.42;MQ0=0;QD=73.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:1,5:7:18.06:555,18,0
3    164776913    rs60170840    C    CAT    1533.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=67.0543;IndelType=I;MQ=59.61;MQ0=0;QD=56.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,26:27:81.28:1576,81,0
3    164777677    rs9290259    T    G    8074.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=242;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.6836;MQ=59.73;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,241:242:99:8075,599,0
3    164781368    rs11718901    G    A    1856.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1889,138,0
3    164783165    rs9283633    T    C    1046.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=T231A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_164783049_164783220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1079,81,0
3    164785338    rs9865476    G    A    1705.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476593    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1738,129,0
3    164786382    rs9758479    C    A    406.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476593    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:439,33,0
3    164786396    rs9754967    T    C    431.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476593    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:465,36,0
3    164786413    rs9756068    A    G    381.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476593    GT:AD:DP:GQ:PL    1/1:0,14:14:36.08:414,36,0
3    164786629    rs11313475    TA    T    883.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=8;HaplotypeScore=96.7041;IndelType=D;MQ=60.39;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:4,32:36:96.15:926,96,0
3    164792631    rs9865161    A    G    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
3    164792686    rs6783643    A    C    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    164793467    rs7430654    C    A    173.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
3    164793492    rs7430656    C    A    217.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
3    164793541    rs7432386    G    T    638.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264382    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:672,51,0
3    165491280    rs1803274    C    T    431.10    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=42;Dels=0.0;FS=2.945;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.026;QD=10.26;ReadPosRankSum=1.179;SNPEFF_AMINO_ACID_CHANGE=A29T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_165490872_165491294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCHE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540653    GT:AD:DP:GQ:PL    0/1:25,17:42:99:461,0,838
3    166958824    rs9683261    A    G    31.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.2;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307529    GT:AD:DP:GQ:PL    0/1:4,2:6:61.16:61,0,152
3    167000256    rs12638625    G    C    1973.71    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.793;DB;DP=130;Dels=0.0;FS=8.385;HRun=1;HaplotypeScore=5.5307;MQ=59.65;MQ0=0;MQRankSum=0.874;QD=15.18;ReadPosRankSum=-0.813;SNPEFF_AMINO_ACID_CHANGE=A607G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_167000026_167000283;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBBX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392764    GT:AD:DP:GQ:PL    0/1:63,66:130:99:2004,0,1796
3    167006568    rs7625639    G    T    1079.68    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.286;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=1.843;QD=21.17;ReadPosRankSum=1.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307529    GT:AD:DP:GQ:PL    0/1:18,33:51:99:1110,0,595
3    167006612    rs7625651    G    T    1371.43    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=0.774;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.091;QD=16.72;ReadPosRankSum=0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307529    GT:AD:DP:GQ:PL    0/1:34,48:82:99:1401,0,957
3    167040185    rs12632964    A    C    144.61    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=16.07;ReadPosRankSum=-1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307529    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,141
3    167045701    rs10645171    C    CA    75.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;DB;DP=29;FS=0.0;HRun=21;HaplotypeScore=253.7559;IndelType=I;MQ=42.34;MQ0=0;MQRankSum=-1.849;QD=2.61;ReadPosRankSum=-1.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBBX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307529    GT:AD:DP:GQ:PL    1/1:17,5:29:3.26:115,3,0
3    167051726    rs10936530    A    G    910.48    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.378;DB;DP=65;Dels=0.0;FS=0.968;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.255;QD=14.01;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=F163;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_167051615_167051773;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBBX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392764    GT:AD:DP:GQ:PL    0/1:31,33:65:99:940,0,930
3    167077691    rs4257551    T    A    1368.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=V104;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_167077658_167077767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBBX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392764    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1401,105,0
3    167159831    rs9864094    T    C    156.79    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=12.06;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471111    GT:AD:DP:GQ:PL    0/1:7,6:13:99:187,0,251
3    167159834    rs9844202    C    T    156.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.792;QD=11.2;ReadPosRankSum=-1.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471111    GT:AD:DP:GQ:PL    0/1:7,7:14:99:187,0,249
3    167159980    rs9810473    A    G    289.48    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.039;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9983;MQ=59.36;MQ0=0;MQRankSum=0.417;QD=9.98;ReadPosRankSum=0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264677    GT:AD:DP:GQ:PL    0/1:13,16:29:99:319,0,381
3    167164044    rs28544123    T    A    43.77    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.931;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.715;QD=3.98;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264677    GT:AD:DP:GQ:PL    0/1:8,3:11:73.77:74,0,296
3    167164187    rs2272138    A    G    1158.89    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=84;Dels=0.0;FS=9.814;HRun=2;HaplotypeScore=1.6642;MQ=58.89;MQ0=0;MQRankSum=0.424;QD=13.8;ReadPosRankSum=1.107;SNPEFF_AMINO_ACID_CHANGE=N378;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_167164180_167164269;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264677    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1189,0,1255
3    167164352    rs2272140    C    T    330.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.51;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.99;MQ0=0;MQRankSum=0.197;QD=14.37;ReadPosRankSum=-0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264677    GT:AD:DP:GQ:PL    0/1:11,11:23:99:361,0,377
3    167167186    rs6770577    T    A    469.19    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=32;Dels=0.0;FS=4.501;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.247;QD=14.66;ReadPosRankSum=-0.741;SNPEFF_AMINO_ACID_CHANGE=S323;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_167167104_167167190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264677    GT:AD:DP:GQ:PL    0/1:18,14:32:99:499,0,534
3    167413168    rs3804610    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462830    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    167508062    rs13090836    T    C    88.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=14.81;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295777    GT:AD:DP:GQ:PL    0/1:2,4:6:63.19:119,0,63
3    167728808    rs9827289    A    T    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309027    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
3    167745703    rs9861339    A    G    741.04    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.384;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.146;QD=18.07;ReadPosRankSum=0.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309027    GT:AD:DP:GQ:PL    0/1:17,24:41:99:771,0,580
3    167754573    rs6786410    A    G    851.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.753;DB;DP=65;Dels=0.0;FS=6.454;HRun=0;HaplotypeScore=1.5774;MQ=59.29;MQ0=0;MQRankSum=0.755;QD=13.1;ReadPosRankSum=0.782;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479415    GT:AD:DP:GQ:PL    0/1:35,30:65:99:882,0,1056
3    167762678    rs67340367    C    CA    51    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=17;FS=0.0;HRun=12;HaplotypeScore=46.9652;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=-0.361;QD=3.0;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309027    GT:AD:DP:GQ:PL    0/1:12,5:17:67.16:90,0,67
3    168530046    rs72155091    C    CT    31.62    QDFilter2    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=38;FS=0.0;HRun=19;HaplotypeScore=367.0839;IndelType=I;MQ=51.5;MQ0=0;MQRankSum=0.536;QD=0.83;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EGFEM1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506760    GT:AD:DP:GQ:PL    0/1:18,12:38:70.65:71,0,82
3    168530083    .    A    T    115    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.227;DP=50;Dels=0.0;FS=18.363;HRun=4;HaplotypeScore=10.0951;MQ=52.72;MQ0=0;MQRankSum=-2.409;QD=2.3;ReadPosRankSum=1.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EGFEM1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506760    GT:AD:DP:GQ:PL    0/1:26,24:50:99:145,0,841
3    168538993    rs603638    A    G    854.77    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.728;DB;DP=72;Dels=0.0;FS=5.197;HRun=2;HaplotypeScore=2.8603;MQ=59.68;MQ0=0;MQRankSum=-2.753;QD=11.87;ReadPosRankSum=0.146;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EGFEM1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382864    GT:AD:DP:GQ:PL    0/1:41,31:72:99:885,0,1191
3    168818560    rs9857376    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264674    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    168819788    rs9290358    A    G    1293.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264674    GT:AD:DP:GQ:PL    1/1:0,37:37:96.32:1327,96,0
3    168825911    rs4955639    T    C    132.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492586    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:165,15,0
3    168830847    rs6444840    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264674    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    168840571    rs3851380    A    T    776.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264674    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:809,60,0
3    168840607    rs3851381    C    T    493.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264674    GT:AD:DP:GQ:PL    1/1:0,13:14:39.13:527,39,0
3    168864550    rs1420476    T    A    83.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_168864511_168865522;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECOM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000464456    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    169098992    rs7622799    G    A    1231.50    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.748;DB;DP=113;Dels=0.0;FS=4.75;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.912;QD=10.8;ReadPosRankSum=0.906;SNPEFF_AMINO_ACID_CHANGE=P120S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_169098975_169099312;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MECOM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000494292    GT:AD:DP:GQ:PL    0/1:68,45:113:99:1261,0,2116
3    169525506    .    AT    A    75.88    PASS    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=3.8;DP=38;FS=29.863;HRun=1;HaplotypeScore=335.0121;IndelType=D;MQ=43.93;MQ0=0;MQRankSum=-1.414;QD=2.0;ReadPosRankSum=-3.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316515    GT:AD:DP:GQ:PL    0/1:29,8:38:99:115,0,564
3    169654095    rs76313862    A    G    194.19    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DB;DP=15;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=12.95;ReadPosRankSum=-0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335556    GT:AD:DP:GQ:PL    0/1:7,8:15:99:224,0,247
3    169710363    rs2160898    G    T    811.31    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.418;DB;DP=54;Dels=0.0;FS=3.765;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-1.219;QD=15.02;ReadPosRankSum=-0.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEC62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469515    GT:AD:DP:GQ:PL    0/1:26,28:54:99:841,0,843
3    169801658    rs6444895    G    A    206.59    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.513;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.732;QD=11.48;ReadPosRankSum=-1.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355897    GT:AD:DP:GQ:PL    0/1:10,8:18:99:237,0,359
3    169854028    .    T    C    36.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.31;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466189    GT:AD:DP:GQ:PL    0/1:2,3:5:66.54:67,0,70
3    169854671    rs34124911    T    C    59.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=9.94;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466189    GT:AD:DP:GQ:PL    0/1:3,3:6:89.61:90,0,104
3    169890056    rs73181230    C    T    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
3    169992975    rs138637605    CT    C    34.24    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.171;DB;DP=63;FS=0.0;HRun=18;HaplotypeScore=447.3218;IndelType=D;MQ=53.44;MQ0=0;MQRankSum=-0.417;QD=0.54;ReadPosRankSum=1.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295797    GT:AD:DP:GQ:PL    0/1:42,11:63:73.27:73,0,275
3    170078232    rs3772173    C    T    2109.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=A18V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_170078156_170079217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SKIL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426052    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2142,162,0
3    170099218    rs67612408    ATTAT    A    186.66    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=33.4635;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=1.495;QD=26.67;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SKIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259119    GT:AD:DP:GQ:PL    0/1:2,5:7:83.82:226,0,84
3    170140792    rs1477211    A    G    434.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000064724    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:467,36,0
3    170140846    rs2111826    A    G    829.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000064724    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:863,72,0
3    170150076    rs6444929    C    T    37.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000064724    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
3    170197954    rs989997    T    G    318.26    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=57.34;MQ0=0;MQRankSum=-0.546;QD=19.89;ReadPosRankSum=1.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451576    GT:AD:DP:GQ:PL    0/1:4,12:16:99:348,0,109
3    170198898    rs3732449    C    T    205.34    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=13.69;ReadPosRankSum=0.637;SNPEFF_AMINO_ACID_CHANGE=S391;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_170198078_170198955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231706    GT:AD:DP:GQ:PL    0/1:8,7:15:99:235,0,197
3    170198967    rs1861939    G    A    117.44    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.57;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451576    GT:AD:DP:GQ:PL    0/1:1,5:6:27.96:147,0,28
3    170584249    rs13462    C    A    210.29    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.259;QD=9.14;ReadPosRankSum=0.097;SNPEFF_AMINO_ACID_CHANGE=V117F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_170584053_170584313;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL22L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000466674    GT:AD:DP:GQ:PL    0/1:15,8:23:99:240,0,500
3    170805340    rs188994242    A    C    660.92    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.443;DB;DP=45;Dels=0.0;FS=4.408;HRun=0;HaplotypeScore=2.0321;MQ=59.49;MQ0=0;MQRankSum=0.994;QD=14.69;ReadPosRankSum=0.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    0/1:20,25:45:99:691,0,692
3    170825905    rs6444960    C    G    2016.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_AMINO_ACID_CHANGE=A693;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_170825854_170825951;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341852    GT:AD:DP:GQ:PL    1/1:0,59:60:99:2050,150,0
3    170825920    rs2291900    G    A    699.23    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=56;Dels=0.0;FS=7.773;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.131;QD=12.49;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=L688;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_170825854_170825951;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341852    GT:AD:DP:GQ:PL    0/1:29,27:56:99:729,0,888
3    170857167    rs35492114    G    GCA    703.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=332.7561;IndelType=I;MQ=48.38;MQ0=0;MQRankSum=-0.83;QD=15.29;ReadPosRankSum=0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    1/1:34,6:46:35.53:745,36,0
3    170858406    rs2292006    T    G    388.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    1/1:0,12:13:30.10:422,30,0
3    170885097    rs2292005    C    T    882.49    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=4.459;DB;DP=60;Dels=0.0;FS=8.557;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.298;QD=14.71;ReadPosRankSum=-0.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    0/1:25,35:60:99:912,0,695
3    170893070    rs12637875    G    A    517.54    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.118;DB;DP=45;Dels=0.0;FS=1.137;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=11.5;ReadPosRankSum=-1.382;SNPEFF_AMINO_ACID_CHANGE=N222;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_170893041_170893119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000468757    GT:AD:DP:GQ:PL    0/1:25,20:45:99:548,0,735
3    170912442    .    C    A    312.50    FSFilter60;HaplotypeScoreFilter13    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.47;DP=108;Dels=0.0;FS=69.627;HRun=3;HaplotypeScore=15.7683;MQ=44.33;MQ0=0;MQRankSum=-4.546;QD=2.89;ReadPosRankSum=3.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    0/1:34,73:108:99:342,0,883
3    170912469    rs6773641    T    A    556.12    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.609;DB;DP=73;Dels=0.0;FS=7.007;HRun=0;HaplotypeScore=1.6208;MQ=43.58;MQ0=0;MQRankSum=0.524;QD=7.62;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    0/1:36,37:73:99:586,0,560
3    170928797    rs6444972    T    C    555.56    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.34;MQ0=0;MQRankSum=-0.792;QD=15.87;ReadPosRankSum=2.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    0/1:18,17:35:99:586,0,570
3    170928820    rs11400262    A    AT    804.45    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=1.479;DB;DP=49;FS=0.0;HRun=4;HaplotypeScore=179.9019;IndelType=I;MQ=59.75;MQ0=0;MQRankSum=-0.032;QD=16.42;ReadPosRankSum=0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    0/1:25,24:49:99:843,0,639
3    170929190    rs2292004    T    C    209.22    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.71;MQ0=0;MQRankSum=0.927;QD=11.62;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    0/1:10,8:18:99:239,0,298
3    171087469    rs3796295    G    A    1661.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=P21;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_171087409_171087474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284483    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1694,129,0
3    171362977    rs360399    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340989    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    171510744    rs73176191    A    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_171509580_171511736;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC078953.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331659    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    171569621    rs67067117    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334567    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    171844787    rs4894810    A    T    1659.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1692,126,0
3    171969077    rs7652177    C    G    1414.19    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=110;Dels=0.0;FS=2.675;HRun=0;HaplotypeScore=1.4972;MQ=59.33;MQ0=0;MQRankSum=0.861;QD=12.86;ReadPosRankSum=0.867;SNPEFF_AMINO_ACID_CHANGE=T152S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_171969050_171969246;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443501    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1444,0,1932
3    171969554    rs6786644    G    T    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443501    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
3    172003831    rs71701220    CT    C    172.05    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.685;DB;DP=23;FS=2.884;HRun=13;HaplotypeScore=77.792;IndelType=D;MQ=61.4;MQ0=0;MQRankSum=-0.791;QD=7.48;ReadPosRankSum=0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    0/1:10,12:23:80.39:211,0,80
3    172016725    rs16845307    A    G    134.26    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.78;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    0/1:2,6:8:62.23:164,0,62
3    172046861    rs2270568    T    C    3214.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=31.83;ReadPosRankSum=-0.992;SNPEFF_AMINO_ACID_CHANGE=G458;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_172046742_172046866;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    1/1:2,99:101:99:3248,199,0
3    172046933    rs6799133    A    G    2647.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.094;QD=34.83;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    1/1:1,75:76:99:2680,166,0
3    172052897    rs71300460    G    GT    141.16    QDFilter2    AB=0.935;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=86;FS=3.211;HRun=16;HaplotypeScore=572.0953;IndelType=I;MQ=56.42;MQ0=0;MQRankSum=-1.031;QD=1.64;ReadPosRankSum=-2.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    0/1:74,6:86:99:180,0,251
3    172059121    rs570549    G    A    761.71    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.09;MQ0=0;MQRankSum=1.953;QD=14.94;ReadPosRankSum=0.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469491    GT:AD:DP:GQ:PL    0/1:27,24:51:99:792,0,941
3    172060700    rs606797    C    T    95.30    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=7.94;ReadPosRankSum=-2.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469491    GT:AD:DP:GQ:PL    0/1:7,5:12:99:125,0,262
3    172064091    rs583550    G    A    454.47    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=4.44;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=60.0;MQ0=0;MQRankSum=1.442;QD=11.65;ReadPosRankSum=0.814;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    0/1:23,16:39:99:484,0,670
3    172064828    rs502170    A    C    103.88    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=14.84;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    0/1:2,5:7:66.82:134,0,67
3    172095880    rs6798409    C    A    64.30    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.07;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336824    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:94,0,30
3    172162829    rs482204    G    A    474.32    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=0.686;QD=12.82;ReadPosRankSum=-2.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241256    GT:AD:DP:GQ:PL    0/1:20,17:37:99:504,0,676
3    172162837    rs477251    T    C    1343.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=36.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241256    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1376,102,0
3    172165727    rs572169    C    T    298.78    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.15;MQ0=0;MQRankSum=0.746;QD=13.58;ReadPosRankSum=-1.03;SNPEFF_AMINO_ACID_CHANGE=R159;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_172165408_172166246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHSR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241256    GT:AD:DP:GQ:PL    0/1:9,13:22:99:329,0,274
3    172166033    rs495225    G    A    379.88    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.479;QD=16.52;ReadPosRankSum=1.564;SNPEFF_AMINO_ACID_CHANGE=G57;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_172165408_172166246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHSR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241256    GT:AD:DP:GQ:PL    0/1:7,12:23:99:410,0,122
3    172224303    rs1131532    A    G    1365.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=29.06;SNPEFF_AMINO_ACID_CHANGE=F275;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_172223298_172224709;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241261    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1399,117,0
3    172224769    rs111284464    GC    G    116.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=32.1981;IndelType=D;MQ=60.0;MQ0=0;QD=23.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472804    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:159,15,0
3    172227199    rs3815496    C    T    247.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472804    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
3    172232905    rs142770957    G    A    363.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.81;MQ0=0;MQRankSum=0.362;QD=16.54;ReadPosRankSum=0.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466777    GT:AD:DP:GQ:PL    0/1:7,14:22:99:394,0,225
3    172365521    rs10804847    C    A    686.50    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.127;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.225;QD=17.6;ReadPosRankSum=0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCEH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273512    GT:AD:DP:GQ:PL    0/1:18,21:39:99:716,0,598
3    172365619    rs9865941    G    A    2029.66    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=6.165;DB;DP=140;Dels=0.0;FS=0.677;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=1.135;QD=14.5;ReadPosRankSum=1.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCEH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273512    GT:AD:DP:GQ:PL    0/1:73,67:140:99:2060,0,2066
3    172428508    rs7629698    C    T    32.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCEH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273512    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
3    172428782    rs2276805    T    C    385.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.69;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7333;MQ=59.48;MQ0=0;MQRankSum=1.576;QD=10.7;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=Q30R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_172428637_172429008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCEH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273512    GT:AD:DP:GQ:PL    0/1:20,16:36:99:415,0,685
3    172473484    rs1403088    A    G    157.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366254    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:190,15,0
3    172480173    rs10654513    A    ATT    2688.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=314.543;IndelType=I;MQ=56.41;MQ0=0;QD=57.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415665    GT:AD:DP:GQ:PL    1/1:2,44:47:99:2731,141,0
3    172480174    rs68188776    AC    A    1820.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=1;HaplotypeScore=370.137;IndelType=D;MQ=56.08;MQ0=0;QD=39.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415665    GT:AD:DP:GQ:PL    1/1:5,41:46:99:1862,138,0
3    172501443    rs7649589    A    C    258.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232458    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
3    172520818    rs7644191    G    C    1450.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8154;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232458    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1483,108,0
3    172520948    rs34170968    G    A    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
3    172534428    rs10936738    C    T    1063.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=37.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232458    GT:AD:DP:GQ:PL    1/1:0,28:28:84.24:1096,84,0
3    172537850    rs35236458    T    G    504.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427830    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:537,39,0
3    172538065    rs76864072    C    T    524.16    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.777;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.669;QD=15.88;ReadPosRankSum=-0.958;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427830    GT:AD:DP:GQ:PL    0/1:15,18:33:99:554,0,500
3    172546587    rs10804850    C    G    1336.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8665;MQ=58.97;MQ0=0;QD=29.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-816B4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428618    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1370,108,0
3    172634025    .    T    TTG    2435.61    PASS    AC=2;AF=1.00;AN=2;DP=63;FS=0.0;HRun=0;HaplotypeScore=227.6371;IndelType=I;MQ=59.17;MQ0=2;QD=37.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351008    GT:AD:DP:GQ:PL    1/1:12,53:63:99:2478,188,0
3    172634026    .    T    G    30.26    HaplotypeScoreFilter13;QDFilter2    AB=0.969;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=59.8349;MQ=59.17;MQ0=2;MQRankSum=2.254;QD=0.47;ReadPosRankSum=-2.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351008    GT:AD:DP:GQ:PL    0/1:63,2:65:60.25:60,0,132
3    173322248    rs3844523    T    C    1967.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=58.07;MQ0=0;QD=35.13;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_173322069_173322881;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361589    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2000,150,0
3    173507395    rs4499633    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361589    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    173518320    rs1488552    A    C    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361589    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    173525731    rs1488548    G    T    386.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361589    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:420,30,0
3    173525768    rs1488547    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361589    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
3    173992971    rs691120    A    G    81.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361589    GT:AD:DP:GQ:PL    0/1:2,3:5:64.51:111,0,65
3    174815291    rs9875611    G    A    77.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434257    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:107,0,67
3    174951548    rs62285901    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316366    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    174951631    rs5028203    A    G    664.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316366    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:697,51,0
3    174951756    rs4371530    T    C    3119.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_3_174951721_174951994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000316366    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3153,232,0
3    175041825    .    AAAAAAAAG    A    1439.48    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.239;DP=51;FS=0.0;HRun=0;HaplotypeScore=720.0777;IndelType=D;MQ=41.93;MQ0=0;MQRankSum=1.188;QD=28.23;ReadPosRankSum=-1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316366    GT:AD:DP:GQ:PL    0/1:24,27:51:99:1479,0,318
3    175041832    .    AG    A    1166.60    PASS    AC=2;AF=1.00;AN=2;DP=51;FS=0.0;HRun=1;HaplotypeScore=649.5428;IndelType=D;MQ=41.93;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316366    GT:AD:DP:GQ:PL    1/1:35,16:51:99:1209,149,0
3    175041838    .    AG    A    161.55    PASS    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=5.133;DP=60;FS=0.0;HRun=1;HaplotypeScore=756.3683;IndelType=D;MQ=45.1;MQ0=0;MQRankSum=-4.442;QD=2.69;ReadPosRankSum=2.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316366    GT:AD:DP:GQ:PL    0/1:47,10:60:99:201,0,441
3    175165079    rs6802937    C    T    3838.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_AMINO_ACID_CHANGE=P385S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_175165017_175165160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454872    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3839,292,0
3    175165201    rs2161041    T    G    621.87    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=50;Dels=0.0;FS=3.763;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=2.126;QD=12.44;ReadPosRankSum=0.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316366    GT:AD:DP:GQ:PL    0/1:26,24:50:99:652,0,848
3    175185060    rs9839245    T    G    339.30    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=16.96;ReadPosRankSum=-1.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454872    GT:AD:DP:GQ:PL    0/1:9,11:20:99:369,0,308
3    175189406    rs67071359    CT    C    557.02    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=4.6;DB;DP=47;FS=0.0;HRun=10;HaplotypeScore=331.6803;IndelType=D;MQ=60.2;MQ0=0;MQRankSum=0.93;QD=11.85;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454872    GT:AD:DP:GQ:PL    0/1:19,28:47:99:596,0,369
3    175189417    rs79264590    G    A    41.37    QDFilter2    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=3.573;DB;DP=55;Dels=0.0;FS=2.089;HRun=0;HaplotypeScore=0.9665;MQ=60.17;MQ0=0;MQRankSum=0.7;QD=0.75;ReadPosRankSum=0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454872    GT:AD:DP:GQ:PL    0/1:23,32:55:71.36:71,0,578
3    175189447    rs79452486    G    A    1168.44    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=3.399;DB;DP=76;Dels=0.0;FS=2.941;HRun=5;HaplotypeScore=1.5731;MQ=59.68;MQ0=0;MQRankSum=-0.507;QD=15.37;ReadPosRankSum=1.233;SNPEFF_AMINO_ACID_CHANGE=Q518;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_175189427_175189546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454872    GT:AD:DP:GQ:PL    0/1:34,42:76:99:1198,0,1002
3    175189718    rs9879221    A    G    178.03    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=11.87;ReadPosRankSum=-0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454872    GT:AD:DP:GQ:PL    0/1:8,7:15:99:208,0,283
3    175345143    rs9866564    C    G    157.54    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.677;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.22;QD=6.85;ReadPosRankSum=-1.165;SNPEFF_AMINO_ACID_CHANGE=P622R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_175345079_175345174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454872    GT:AD:DP:GQ:PL    0/1:14,9:23:99:188,0,453
3    175473047    rs9826737    T    C    4465.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4216;MQ=59.71;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=L677S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_175473008_175473206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NAALADL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454872    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4465,334,0
3    176744031    rs112275760    GA    G    485.20    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=4.992;DB;DP=59;FS=0.0;HRun=11;HaplotypeScore=162.4873;IndelType=D;MQ=57.96;MQ0=0;MQRankSum=0.008;QD=8.22;ReadPosRankSum=-0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1XR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430069    GT:AD:DP:GQ:PL    0/1:31,28:59:99:524,0,698
3    176752202    rs1905503    A    T    30.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.4;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1XR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430069    GT:AD:DP:GQ:PL    0/1:5,2:7:60.81:61,0,178
3    176765253    rs1201300    G    A    2843.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.47;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1XR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352800    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2876,223,0
3    176765269    rs3749234    T    C    1621.84    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.55;MQ0=0;MQRankSum=1.492;QD=15.75;ReadPosRankSum=-0.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1XR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352800    GT:AD:DP:GQ:PL    0/1:43,60:103:99:1652,0,1240
3    176767667    rs35503291    GTTAC    G    291.46    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=132.1805;IndelType=D;MQ=48.92;MQ0=0;MQRankSum=-3.387;QD=18.22;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1XR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352800    GT:AD:DP:GQ:PL    0/1:9,7:16:99:330,0,686
3    176769608    rs1881979    G    A    441.15    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.567;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.38;MQ0=0;MQRankSum=1.797;QD=11.92;ReadPosRankSum=0.802;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1XR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413084    GT:AD:DP:GQ:PL    0/1:22,15:37:99:471,0,730
3    178538249    rs6780023    G    A    1028.74    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.28;DB;DP=82;Dels=0.0;FS=7.923;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.281;QD=12.55;ReadPosRankSum=-1.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358316    GT:AD:DP:GQ:PL    0/1:45,37:82:99:1059,0,1412
3    178538304    rs6779867    C    A    1275.45    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.836;DB;DP=102;Dels=0.0;FS=3.733;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=12.5;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358316    GT:AD:DP:GQ:PL    0/1:57,45:102:99:1305,0,1556
3    178538343    rs6804163    A    G    999.35    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.057;DB;DP=94;Dels=0.0;FS=4.202;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.457;QD=10.63;ReadPosRankSum=0.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358316    GT:AD:DP:GQ:PL    0/1:54,40:94:99:1029,0,1664
3    178545774    rs9883312    C    A    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470361    GT:AD:DP:GQ:PL    0/1:2,2:4:69.92:71,0,70
3    178546026    rs9831934    T    C    1075.27    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.514;DB;DP=78;Dels=0.0;FS=4.403;HRun=0;HaplotypeScore=1.4679;MQ=59.76;MQ0=0;MQRankSum=0.685;QD=13.79;ReadPosRankSum=-0.245;SNPEFF_AMINO_ACID_CHANGE=N77;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_178545966_178546161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457763    GT:AD:DP:GQ:PL    0/1:38,40:78:99:1105,0,1263
3    178560581    rs6443583    A    C    630.57    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=40;Dels=0.0;FS=7.009;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.204;QD=15.76;ReadPosRankSum=0.383;SNPEFF_AMINO_ACID_CHANGE=T169;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_178560441_178560725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457763    GT:AD:DP:GQ:PL    0/1:17,23:40:99:661,0,553
3    178742690    rs4607155    T    C    481.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414084    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:515,39,0
3    178748480    rs4955810    C    T    461.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311417    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:495,36,0
3    178785549    rs6772028    G    A    1193.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.4;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_178785271_178785597;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311417    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1226,99,0
3    178917005    rs3729674    A    G    359.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.226;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=12.85;ReadPosRankSum=1.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468036    GT:AD:DP:GQ:PL    0/1:16,12:28:99:390,0,574
3    178917762    rs11417815    C    CT    143.13    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=24;FS=0.0;HRun=13;HaplotypeScore=249.1055;IndelType=I;MQ=55.69;MQ0=0;MQRankSum=0.429;QD=5.96;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468036    GT:AD:DP:GQ:PL    0/1:15,9:24:61.05:182,0,61
3    178921158    rs7623154    G    A    122.25    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.45;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468036    GT:AD:DP:GQ:PL    0/1:1,4:5:22.75:152,0,23
3    178921253    rs17550640    G    GTAAA    494.25    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=62.6151;IndelType=I;MQ=56.85;MQ0=0;MQRankSum=-1.154;QD=32.95;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468036    GT:AD:DP:GQ:PL    0/1:10,5:15:99:533,0,362
3    178921639    rs2699895    C    A    840.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468036    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:874,66,0
3    178922222    rs3729676    G    T    581.78    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.472;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=22.38;ReadPosRankSum=1.861;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:8,18:26:99:612,0,245
3    178922274    rs2699896    C    A    2018.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=38.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    1/1:0,52:52:99:2052,150,0
3    178922430    rs3729679    A    G    1511.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=37.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1544,114,0
3    178927645    rs3729681    C    T    31.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.98;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:2,2:4:61.92:62,0,69
3    178927848    rs67871207    AT    A    53.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=27.7338;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=5.31;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:5,5:10:67.44:92,0,67
3    178937346    rs41273619    T    C    103.84    MQFilter40    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.601;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=24.93;MQ0=8;MQRankSum=-0.867;QD=3.58;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:17,11:29:99:134,0,294
3    178938023    rs112896638    A    C    31.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.89;MQ0=0;MQRankSum=1.026;QD=7.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:2,2:4:61.01:61,0,68
3    178938747    rs6443625    A    T    126.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=3.358;HRun=5;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.201;QD=9.05;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:7,7:14:99:157,0,250
3    178939018    rs3729689    T    C    168.74    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.97;MQ0=0;MQRankSum=-0.742;QD=24.11;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:1,6:7:19.59:199,0,20
3    178942431    rs2699889    C    G    963.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:996,72,0
3    178947325    rs3729692    A    C    104.27    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.85;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462255    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:134,0,26
3    178947684    rs41265402    G    C    536    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.019;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.923;QD=16.75;ReadPosRankSum=-0.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462255    GT:AD:DP:GQ:PL    0/1:16,16:32:99:566,0,560
3    178957783    rs3976507    C    T    340.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=58.61;MQ0=0;MQRankSum=-0.643;QD=12.6;ReadPosRankSum=-0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314235    GT:AD:DP:GQ:PL    0/1:15,12:27:99:370,0,440
3    178957969    rs6782557    G    A    95.77    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.15;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314235    GT:AD:DP:GQ:PL    0/1:1,4:5:27.63:126,0,28
3    178960607    rs1059691    A    G    467.46    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.494;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.37;MQ0=3;MQRankSum=-0.415;QD=13.75;ReadPosRankSum=0.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:15,19:34:99:497,0,486
3    178961038    rs139527128    T    C    244.32    MQFilter40;QDFilter2    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=155;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.0;MQ=10.51;MQ0=123;MQRankSum=-0.652;QD=1.58;ReadPosRankSum=-1.364;SNPEFF_AMINO_ACID_CHANGE=N143S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_178960566_178961072;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000485523    GT:AD:DP:GQ:PL    0/1:118,37:155:99:274,0,267
3    178962517    rs4080957    T    C    80.21    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=51.33;MQ0=0;MQRankSum=-1.694;QD=5.01;ReadPosRankSum=1.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263967    GT:AD:DP:GQ:PL    0/1:9,7:16:99:110,0,337
3    178968634    rs7645550    C    T    1460.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=A31T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_178968531_178968722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000485523    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1494,114,0
3    178969107    rs1183319    G    A    82.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349697    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    178976591    rs56400023    T    A    189.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=1.447;QD=18.91;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349697    GT:AD:DP:GQ:PL    0/1:4,6:10:99:219,0,136
3    178976777    rs11720871    C    T    786.74    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.071;DB;DP=55;Dels=0.0;FS=2.407;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-1.349;QD=14.3;ReadPosRankSum=-0.757;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_178976736_178977679;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392686    GT:AD:DP:GQ:PL    0/1:24,31:55:99:817,0,746
3    178976821    rs11720935    G    A    1093.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.582;DB;DP=60;Dels=0.0;FS=3.67;HRun=0;HaplotypeScore=0.9998;MQ=59.23;MQ0=0;MQRankSum=-0.208;QD=18.22;ReadPosRankSum=0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349697    GT:AD:DP:GQ:PL    0/1:24,36:60:99:1123,0,682
3    178977111    rs2160756    G    T    603.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_178976736_178977679;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392686    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:636,48,0
3    178977844    rs7613411    G    C    1130.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349697    GT:AD:DP:GQ:PL    1/1:1,33:34:87.25:1163,87,0
3    178978078    rs62410370    T    G    700.69    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=3.116;DB;DP=61;Dels=0.0;FS=2.22;HRun=1;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=-0.081;QD=11.49;ReadPosRankSum=0.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349697    GT:AD:DP:GQ:PL    0/1:36,25:61:99:731,0,1089
3    178978328    rs62410371    C    T    453.09    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.81;DB;DP=37;Dels=0.0;FS=10.184;HRun=1;HaplotypeScore=0.9973;MQ=58.87;MQ0=0;MQRankSum=0.294;QD=12.25;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349697    GT:AD:DP:GQ:PL    0/1:22,15:37:99:483,0,617
3    178984575    rs7612684    A    G    96.08    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=13.73;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_178984437_178984759;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349697    GT:AD:DP:GQ:PL    0/1:3,4:7:78.98:126,0,79
3    179051472    rs35983049    A    G    532.01    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.995;DB;DP=44;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=1.9995;MQ=59.15;MQ0=0;MQRankSum=0.687;QD=12.09;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=E240;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_179051057_179053323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF639;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326361    GT:AD:DP:GQ:PL    0/1:25,19:44:99:562,0,798
3    179076947    rs1966448    C    T    43.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263969    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:74,0,25
3    179081999    rs76221947    A    C    58.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=8.38;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467174    GT:AD:DP:GQ:PL    0/1:4,3:7:88.66:89,0,144
3    179092989    rs9865666    C    T    589.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.39;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263969    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:623,48,0
3    179096508    rs7637065    C    G    814.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=P523R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_179096373_179096602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263969    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:847,66,0
3    179103264    rs151251999    CAT    C    772.90    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=3.86;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=113.3625;IndelType=D;MQ=59.61;MQ0=0;MQRankSum=-0.888;QD=24.93;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263969    GT:AD:DP:GQ:PL    0/1:12,19:31:99:812,0,545
3    179103342    rs75719342    C    CT    2160.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.979;DB;DP=77;FS=0.0;HRun=9;HaplotypeScore=215.832;IndelType=I;MQ=59.08;MQ0=0;MQRankSum=1.481;QD=28.05;ReadPosRankSum=-0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263969    GT:AD:DP:GQ:PL    1/1:10,67:77:99:2202,181,0
3    179109735    rs2287209    A    G    691.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263969    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:724,54,0
3    179122918    rs2287310    T    C    335.38    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=23.96;ReadPosRankSum=0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232564    GT:AD:DP:GQ:PL    0/1:4,10:14:99:365,0,126
3    179131652    rs2287212    A    T    119.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=14.96;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497513    GT:AD:DP:GQ:PL    0/1:2,6:8:61.40:150,0,61
3    179132515    rs79503118    C    CTA    1398.55    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.345;DB;DP=63;FS=0.0;HRun=0;HaplotypeScore=164.9079;IndelType=I;MQ=59.68;MQ0=0;MQRankSum=0.099;QD=22.2;ReadPosRankSum=-1.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497513    GT:AD:DP:GQ:PL    0/1:33,30:63:99:1438,0,1034
3    179137273    rs1362650    A    G    1883.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.404;QD=31.4;ReadPosRankSum=-1.213;SNPEFF_AMINO_ACID_CHANGE=S39;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_179137187_179137293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000232564    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1917,111,0
3    179288086    rs12632721    C    T    351.66    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.441;DB;DP=25;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=14.07;ReadPosRankSum=-0.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490364    GT:AD:DP:GQ:PL    0/1:13,12:25:99:382,0,468
3    179291308    rs113012499    CT    C    322.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=105.8247;IndelType=D;MQ=58.46;MQ0=0;QD=13.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490364    GT:AD:DP:GQ:PL    1/1:9,15:24:41.97:364,42,0
3    179294352    rs2292907    C    A    578.23    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.428;DB;DP=41;Dels=0.0;FS=1.949;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.591;QD=14.1;ReadPosRankSum=-0.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467383    GT:AD:DP:GQ:PL    0/1:23,18:41:99:608,0,807
3    179298584    rs138102554    CT    C    376.11    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.783;DB;DP=45;FS=3.025;HRun=12;HaplotypeScore=133.6406;IndelType=D;MQ=60.21;MQ0=0;MQRankSum=0.902;QD=8.36;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463661    GT:AD:DP:GQ:PL    0/1:21,24:45:99:415,0,420
3    179298999    rs1132429    C    T    2071.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.31;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=D297;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_179298928_179299008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392662    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2105,159,0
3    179304514    rs61086485    G    A    305.01    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.294;QD=25.42;ReadPosRankSum=0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484312    GT:AD:DP:GQ:PL    0/1:3,9:12:81.19:335,0,81
3    179305626    rs79000506    G    A    141.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=17.64;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484312    GT:AD:DP:GQ:PL    0/1:3,5:8:99:171,0,100
3    179305654    rs6443659    A    T    130.55    PASS    AB=0.056;AC=1;AF=0.50;AN=2;BaseQRankSum=0.964;DB;DP=18;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9993;MQ=58.71;MQ0=0;MQRankSum=0.385;QD=7.25;ReadPosRankSum=-1.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484312    GT:AD:DP:GQ:PL    0/1:1,17:18:15.93:160,0,16
3    179306775    rs10513762    C    T    908.38    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.0;DB;DP=52;Dels=0.0;FS=2.573;HRun=0;HaplotypeScore=0.9789;MQ=59.28;MQ0=0;MQRankSum=0.994;QD=17.47;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=R103H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_179306619_179306783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392659    GT:AD:DP:GQ:PL    0/1:24,28:52:99:938,0,675
3    179320682    rs16830629    G    A    409.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.037;QD=19.52;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259038    GT:AD:DP:GQ:PL    0/1:7,14:21:99:440,0,235
3    179322385    rs2339844    A    C    1519.08    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=119;Dels=0.0;FS=5.854;HRun=1;HaplotypeScore=1.7883;MQ=59.06;MQ0=0;MQRankSum=-0.408;QD=12.77;ReadPosRankSum=-1.162;SNPEFF_AMINO_ACID_CHANGE=C10G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_179322315_179322428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259038    GT:AD:DP:GQ:PL    0/1:59,60:119:99:1549,0,1765
3    179332901    rs180977794    T    A    213.58    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.166;DB;DP=29;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.509;QD=7.36;ReadPosRankSum=-1.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259037    GT:AD:DP:GQ:PL    0/1:17,12:29:99:244,0,613
3    179399570    rs13080037    C    T    671.01    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.19;DB;DP=36;Dels=0.0;FS=2.915;HRun=1;HaplotypeScore=0.6651;MQ=59.36;MQ0=0;MQRankSum=-0.373;QD=18.64;ReadPosRankSum=-0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:14,22:36:99:701,0,456
3    179439466    rs2119898    T    C    143.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=17.89;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:2,6:8:40.61:173,0,41
3    179448066    rs67681638    AT    A    793.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=11;HaplotypeScore=108.6359;IndelType=D;MQ=61.04;MQ0=0;QD=19.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    1/1:6,34:40:99:836,102,0
3    179448383    rs3213761    C    T    191.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=20;Dels=0.0;FS=2.304;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=9.58;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:12,8:20:99:222,0,391
3    179457831    .    T    C    76.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:2,3:5:67.96:107,0,68
3    179463076    rs58527921    A    G    225.51    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.069;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=13.27;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:8,9:17:99:255,0,261
3    179463081    rs59131484    G    A    156.71    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-1.482;QD=9.79;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:9,7:16:99:187,0,318
3    179469995    rs2239639    A    G    88.47    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.657;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.813;QD=5.53;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:10,6:16:99:118,0,352
3    179472674    rs2287240    C    T    988.64    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.494;DB;DP=58;Dels=0.0;FS=14.743;HRun=0;HaplotypeScore=1.9454;MQ=60.0;MQ0=0;MQRankSum=-0.993;QD=17.05;ReadPosRankSum=1.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:26,32:58:99:1019,0,730
3    179472868    rs9809051    G    A    112.78    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=18.8;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:1,5:6:24.96:143,0,25
3    179474767    rs3732992    A    G    573.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.143;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.364;QD=13.03;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:22,22:44:99:603,0,748
3    179481971    rs60941175    CTG    C    334.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=198.8727;IndelType=D;MQ=56.05;MQ0=0;QD=10.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497155    GT:AD:DP:GQ:PL    1/1:15,11:32:46.78:376,47,0
3    179501981    rs71300409    C    CA    505.62    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.078;DB;DP=49;FS=3.34;HRun=11;HaplotypeScore=171.2891;IndelType=I;MQ=57.67;MQ0=0;MQRankSum=0.039;QD=10.32;ReadPosRankSum=-1.033;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263966    GT:AD:DP:GQ:PL    0/1:27,22:49:99:545,0,314
3    179527459    rs111620765    G    GAA    635.57    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.141;DB;DP=35;FS=0.0;HRun=11;HaplotypeScore=119.1697;IndelType=I;MQ=59.3;MQ0=0;MQRankSum=0.5;QD=18.16;ReadPosRankSum=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263962    GT:AD:DP:GQ:PL    0/1:18,15:35:99:675,0,268
3    179533496    rs2111397    T    C    494.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263962    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:527,42,0
3    179592053    rs1609981    G    A    480.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463761    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:513,39,0
3    179605294    rs2302741    T    C    300.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263962    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:333,24,0
3    179605647    rs41265425    C    A    1434.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263962    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1467,111,0
3    179620717    rs7637613    A    G    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263962    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    180319981    rs1532485    G    T    152.67    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=8.98;ReadPosRankSum=-0.241;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_180319918_180320210;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296015    GT:AD:DP:GQ:PL    0/1:8,9:17:99:183,0,222
3    180325487    rs9858483    T    C    820.99    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.611;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9536;MQ=59.73;MQ0=0;MQRankSum=0.401;QD=12.07;ReadPosRankSum=0.463;SNPEFF_AMINO_ACID_CHANGE=A408;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_180325436_180325553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296015    GT:AD:DP:GQ:PL    0/1:38,30:68:99:851,0,1141
3    180325754    rs7645817    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489868    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    180333876    rs58774466    G    C    115.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.48;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273654    GT:AD:DP:GQ:PL    0/1:3,4:7:99:145,0,102
3    180334623    rs7612917    C    T    1429.13    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.063;DB;DP=123;Dels=0.0;FS=4.372;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=11.62;ReadPosRankSum=-0.965;SNPEFF_AMINO_ACID_CHANGE=V799;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_180334614_180334754;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442201    GT:AD:DP:GQ:PL    0/1:65,58:123:99:1459,0,1998
3    180365043    rs72305622    T    TA    245.65    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.611;DB;DP=42;FS=6.631;HRun=11;HaplotypeScore=122.9665;IndelType=I;MQ=58.6;MQ0=0;MQRankSum=-0.854;QD=5.85;ReadPosRankSum=0.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273654    GT:AD:DP:GQ:PL    0/1:30,12:42:99:285,0,267
3    180365956    rs6769457    G    A    1155.84    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.912;DB;DP=73;Dels=0.0;FS=1.274;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.321;QD=15.83;ReadPosRankSum=0.197;SNPEFF_AMINO_ACID_CHANGE=S453;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_180365953_180366147;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442201    GT:AD:DP:GQ:PL    0/1:35,38:73:99:1186,0,1160
3    180630565    rs1805579    T    C    913.19    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.265;DB;DP=64;Dels=0.0;FS=5.474;HRun=1;HaplotypeScore=0.8321;MQ=59.64;MQ0=0;MQRankSum=-1.492;QD=14.27;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305586    GT:AD:DP:GQ:PL    0/1:29,35:64:99:943,0,752
3    180650962    rs536127    G    A    30.70    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305586    GT:AD:DP:GQ:PL    0/1:4,2:6:60.69:61,0,128
3    180680889    rs11379525    AT    A    33.94    QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=56;FS=0.0;HRun=18;HaplotypeScore=429.6414;IndelType=D;MQ=52.56;MQ0=0;MQRankSum=-0.018;QD=0.61;ReadPosRankSum=-0.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461044    GT:AD:DP:GQ:PL    0/1:43,8:56:72.97:73,0,283
3    180689509    rs71783895    ATACT    A    1054.31    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=5.923;DB;DP=50;FS=2.763;HRun=0;HaplotypeScore=227.994;IndelType=D;MQ=58.25;MQ0=0;MQRankSum=-1.486;QD=20.67;ReadPosRankSum=-0.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476672    GT:AD:DP:GQ:PL    0/1:28,23:50:99:1093,0,1822
3    181417598    rs13096623    G    A    579.81    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=41;Dels=0.0;FS=1.559;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=14.14;ReadPosRankSum=-0.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC117415.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410534    GT:AD:DP:GQ:PL    0/1:19,22:41:99:610,0,592
3    182546017    rs9814205    C    A    2928.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=37.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2961,214,0
3    182559765    rs11401208    C    CA    95.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.286;DB;DP=20;FS=0.0;HRun=20;HaplotypeScore=300.3889;IndelType=I;MQ=39.95;MQ0=0;MQRankSum=-1.286;QD=4.77;ReadPosRankSum=-1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:11,6:20:7.05:136,7,0
3    182559796    .    T    G    32.65    HaplotypeScoreFilter13;QDFilter2    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.198;DP=31;Dels=0.03;FS=0.0;HRun=2;HaplotypeScore=17.1489;MQ=44.93;MQ0=0;MQRankSum=-2.934;QD=1.02;ReadPosRankSum=3.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    0/1:10,21:31:62.64:63,0,279
3    182563088    rs4859249    C    G    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    182575631    rs661774    G    T    2065.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2099,162,0
3    182576923    rs645597    T    A    1004.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=1.494;QD=34.65;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:1,28:29:78.25:1038,78,0
3    182583990    rs2272117    C    T    48.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=3.25;ReadPosRankSum=-0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    0/1:10,5:15:78.81:79,0,381
3    182584976    rs9853665    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    182587126    rs73050693    G    A    262.84    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.781;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.435;QD=10.95;ReadPosRankSum=-0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    0/1:14,10:24:99:293,0,406
3    182589987    rs73050702    A    G    91.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=9.14;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    0/1:5,5:10:99:121,0,180
3    182590354    rs771156    C    T    848.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:881,69,0
3    182598863    rs796406    A    G    447.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:480,36,0
3    182603693    rs6784314    G    A    164.69    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7262;MQ=58.45;MQ0=0;MQRankSum=-0.343;QD=5.49;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    0/1:23,7:30:99:195,0,775
3    182606979    rs643625    G    A    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    182607466    rs73054647    A    T    162.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=20.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323116    GT:AD:DP:GQ:PL    0/1:2,6:8:57.80:192,0,58
3    182614493    rs4859142    T    C    1037.81    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=91;Dels=0.0;FS=0.867;HRun=0;HaplotypeScore=3.3494;MQ=59.54;MQ0=0;MQRankSum=0.232;QD=11.4;ReadPosRankSum=2.337;SNPEFF_AMINO_ACID_CHANGE=F211;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_182614488_182614553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000482070    GT:AD:DP:GQ:PL    0/1:56,35:91:99:1068,0,1726
3    182681740    rs4859146    C    T    1287.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=A106;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_182681669_182681837;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCUN1D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292782    GT:AD:DP:GQ:PL    1/1:0,37:37:96.32:1320,96,0
3    182681853    rs4859147    T    C    937.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCUN1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292782    GT:AD:DP:GQ:PL    1/1:0,32:32:75.23:971,75,0
3    182735182    rs6786878    C    A    1833.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.54;MQ0=0;QD=36.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448585    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1867,138,0
3    182735211    rs2292056    T    G    514.94    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=37;Dels=0.0;FS=6.146;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=13.92;ReadPosRankSum=-0.965;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448585    GT:AD:DP:GQ:PL    0/1:19,18:37:99:545,0,644
3    182738159    rs9834143    A    C    189.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489909    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:222,18,0
3    182755209    rs2270968    T    G    97.63    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=4.65;ReadPosRankSum=-0.702;SNPEFF_AMINO_ACID_CHANGE=H314P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_182755006_182755222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392616    GT:AD:DP:GQ:PL    0/1:16,5:21:99:128,0,515
3    182757178    rs9861464    T    C    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265594    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
3    182789367    rs6785680    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486226    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    182790249    rs7622479    G    A    2016.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=L132;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_182790154_182790275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265594    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2049,153,0
3    182804385    rs6806083    G    A    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265594    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,111
3    182810144    rs3732604    T    G    153.60    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.736;DB;DP=22;Dels=0.0;FS=2.817;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=6.98;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473955    GT:AD:DP:GQ:PL    0/1:15,7:22:99:184,0,520
3    182853670    rs482912    T    C    2938.52    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.309;DB;DP=193;DS;Dels=0.0;FS=5.487;HRun=0;HaplotypeScore=1.7234;MQ=59.9;MQ0=0;MQRankSum=-0.206;QD=15.23;ReadPosRankSum=-0.81;SNPEFF_AMINO_ACID_CHANGE=I294V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_182853505_182853675;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000466939    GT:AD:DP:GQ:PL    0/1:92,100:193:99:2969,0,2911
3    182858287    rs522235    C    T    553.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.407;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.32;MQ0=0;MQRankSum=1.222;QD=12.04;ReadPosRankSum=0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265598    GT:AD:DP:GQ:PL    0/1:25,20:46:99:584,0,522
3    182858461    rs831256    A    G    301.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.458;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=1.725;QD=13.69;ReadPosRankSum=-0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265598    GT:AD:DP:GQ:PL    0/1:11,11:22:99:331,0,343
3    182870082    rs682396    G    A    1094.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470251    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1128,87,0
3    182870436    rs514636    G    A    851.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470251    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:885,66,0
3    182871962    rs653316    C    T    943.35    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=63;Dels=0.0;FS=5.067;HRun=1;HaplotypeScore=2.2859;MQ=60.0;MQ0=0;MQRankSum=0.928;QD=14.97;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=A65;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_182871470_182872179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000466939    GT:AD:DP:GQ:PL    0/1:31,32:63:99:973,0,836
3    182872318    rs2280563    C    T    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486686    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
3    182912991    .    TA    T    826.99    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=7.509;DP=86;FS=2.932;HRun=7;HaplotypeScore=357.0242;IndelType=D;MQ=60.61;MQ0=0;MQRankSum=-0.328;QD=9.62;ReadPosRankSum=-1.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:48,38:86:99:866,0,1485
3    182913092    rs577136    T    G    2076.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    1/1:0,62:63:99:2109,168,0
3    182925404    rs6804951    T    C    1994.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=T902A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_182925396_182925611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2028,147,0
3    182933562    rs3821522    C    T    34.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
3    182937604    .    ATAGT    A    519.10    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.112;DP=30;FS=0.0;HRun=0;HaplotypeScore=141.9865;IndelType=D;MQ=57.61;MQ0=0;MQRankSum=-1.249;QD=17.3;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:18,12:30:99:558,0,1320
3    182946002    rs6803121    A    G    178.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437431    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:211,15,0
3    182947413    rs1122143    C    G    2302.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.58;MQ0=0;QD=34.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437431    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2335,177,0
3    182987515    rs3811732    G    A    641.10    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=4.752;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=1.11;QD=18.32;ReadPosRankSum=-0.451;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477699    GT:AD:DP:GQ:PL    0/1:16,19:35:99:671,0,432
3    183006918    rs3732602    A    G    180.52    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.709;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.78;MQ0=0;MQRankSum=-1.529;QD=8.21;ReadPosRankSum=-0.112;SNPEFF_AMINO_ACID_CHANGE=F125S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183006908_183007008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437431    GT:AD:DP:GQ:PL    0/1:15,7:22:99:211,0,412
3    183007015    rs3732601    G    A    54.94    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=13;Dels=0.0;FS=7.404;HRun=2;HaplotypeScore=1.7753;MQ=49.54;MQ0=0;MQRankSum=-2.424;QD=4.23;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:7,6:13:84.94:85,0,188
3    183007021    rs3732600    G    A    57.60    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=1.7753;MQ=48.57;MQ0=0;MQRankSum=-1.0;QD=4.8;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:7,5:12:87.59:88,0,203
3    183007040    rs3732598    A    G    73.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.734;MQ=50.58;MQ0=0;MQRankSum=0.361;QD=8.19;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:5,4:9:99:104,0,137
3    183007057    rs3732597    T    C    62.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=55.22;MQ0=0;MQRankSum=0.937;QD=8.93;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:4,3:7:92.51:93,0,135
3    183007096    rs3732596    C    T    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:2,2:4:56.16:70,0,56
3    183007107    rs115012491    C    T    39.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=58.14;MQ0=0;MQRankSum=-1.231;QD=7.81;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:2,3:5:69.04:69,0,71
3    183007124    rs76222713    C    G    82.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.14;MQ0=0;MQRankSum=0.358;QD=16.49;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:2,3:5:67.19:112,0,67
3    183007152    rs78359503    C    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.23;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
3    183014704    rs144178181    A    G    238.94    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.633;DB;DP=19;Dels=0.0;FS=2.35;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.531;QD=12.58;ReadPosRankSum=-0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480551    GT:AD:DP:GQ:PL    0/1:9,10:19:99:269,0,285
3    183017713    rs2293202    A    C    265.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.511;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=17.67;ReadPosRankSum=-1.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462559    GT:AD:DP:GQ:PL    0/1:5,10:15:99:295,0,174
3    183017965    rs2293203    T    A    159.49    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.983;QD=8.39;ReadPosRankSum=0.234;SNPEFF_AMINO_ACID_CHANGE=Q378L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183017793_183017984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:13,6:19:99:189,0,427
3    183028843    rs41488945    T    G    1781.88    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.756;DB;DP=104;Dels=0.0;FS=0.815;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.138;QD=17.13;ReadPosRankSum=0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:51,53:104:99:1812,0,1608
3    183056541    rs6772530    A    C    359.95    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.89;MQ0=0;MQRankSum=-0.833;QD=17.14;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482017    GT:AD:DP:GQ:PL    0/1:8,13:21:99:390,0,268
3    183059540    rs5854975    C    CT    272.95    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=15.3201;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=34.12;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328913    GT:AD:DP:GQ:PL    0/1:1,7:8:17.91:312,0,18
3    183210972    rs1001190    T    C    1033.08    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=87;Dels=0.0;FS=2.123;HRun=0;HaplotypeScore=3.3304;MQ=59.74;MQ0=0;MQRankSum=-1.03;QD=11.87;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341319    GT:AD:DP:GQ:PL    0/1:49,38:87:99:1063,0,1555
3    183210991    rs1979983    G    T    987.83    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.879;DB;DP=87;Dels=0.0;FS=4.415;HRun=1;HaplotypeScore=1.3302;MQ=59.74;MQ0=0;MQRankSum=0.57;QD=11.35;ReadPosRankSum=1.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341319    GT:AD:DP:GQ:PL    0/1:53,34:87:99:1018,0,1606
3    183211687    rs3821514    G    C    79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=13.17;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341319    GT:AD:DP:GQ:PL    0/1:3,3:6:99:109,0,103
3    183211906    rs1520101    A    G    1519.44    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.034;DB;DP=119;Dels=0.0;FS=0.691;HRun=0;HaplotypeScore=1.6229;MQ=59.69;MQ0=0;MQRankSum=-0.445;QD=12.77;ReadPosRankSum=-1.204;SNPEFF_AMINO_ACID_CHANGE=N437;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183211867_183212069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341319    GT:AD:DP:GQ:PL    0/1:64,55:119:99:1549,0,1958
3    183368005    rs3755649    G    A    130.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242810    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
3    183368216    rs3755648    A    T    1797.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.32;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=R24;SNPEFF_CODON_CHANGE=cgA/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183368084_183369064;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242810    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1830,141,0
3    183368891    rs2293031    C    T    1219.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.1;SNPEFF_AMINO_ACID_CHANGE=H249;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183368084_183369064;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242810    GT:AD:DP:GQ:PL    1/1:0,32:32:93.29:1252,93,0
3    183390418    rs55790174    C    T    90.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475827    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    183432983    rs3736535    C    T    991.91    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=5.241;DB;DP=90;Dels=0.0;FS=1.762;HRun=0;HaplotypeScore=0.9734;MQ=59.49;MQ0=0;MQRankSum=0.879;QD=11.02;ReadPosRankSum=-0.626;SNPEFF_AMINO_ACID_CHANGE=T11;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183432932_183433050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305135    GT:AD:DP:GQ:PL    0/1:53,37:90:99:1022,0,1484
3    183439972    rs3841649    A    AG    149.84    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.215;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=39.1309;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=8.81;ReadPosRankSum=1.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305135    GT:AD:DP:GQ:PL    0/1:12,5:17:99:189,0,453
3    183469776    rs78367628    C    T    437.19    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.878;DB;DP=35;Dels=0.0;FS=3.399;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.447;QD=12.49;ReadPosRankSum=0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305135    GT:AD:DP:GQ:PL    0/1:19,16:35:99:467,0,691
3    183491720    rs262960    T    C    343.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305135    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:377,30,0
3    183493991    rs2606220    G    A    171.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305135    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
3    183504202    rs111421206    C    CTT    202.64    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=13;FS=0.0;HRun=10;HaplotypeScore=40.676;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=-0.573;QD=15.59;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305135    GT:AD:DP:GQ:PL    0/1:7,6:13:61.39:242,0,61
3    183521939    rs34612765    C    T    1147.26    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.164;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7339;MQ=59.67;MQ0=0;MQRankSum=1.368;QD=16.39;ReadPosRankSum=-0.504;SNPEFF_AMINO_ACID_CHANGE=S1249;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183521775_183521976;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305135    GT:AD:DP:GQ:PL    0/1:29,41:70:99:1177,0,864
3    183535763    rs897604    A    G    1028.34    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=2.056;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.522;MQ=58.7;MQ0=0;MQRankSum=1.986;QD=18.04;ReadPosRankSum=1.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP6D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463801    GT:AD:DP:GQ:PL    0/1:20,37:57:99:1058,0,454
3    183536063    rs894000    T    C    273.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP6D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463801    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:307,27,0
3    183551733    rs2305666    A    C    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.57;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    0/1:2,2:4:64.26:64,0,66
3    183558402    rs3732581    C    G    474.96    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=34;Dels=0.0;FS=3.051;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.087;QD=13.97;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=V212L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183558358_183558428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    0/1:14,20:34:99:505,0,333
3    183558581    rs12636826    G    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    183560195    rs13091    A    G    1562.13    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=0.628;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9063;MQ=60.0;MQ0=0;MQRankSum=-0.888;QD=20.29;ReadPosRankSum=-0.535;SNPEFF_AMINO_ACID_CHANGE=H216;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183560086_183560235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317096    GT:AD:DP:GQ:PL    0/1:31,46:77:99:1592,0,1014
3    183560292    rs7652031    A    T    486    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.395;QD=18.69;ReadPosRankSum=0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    0/1:10,16:26:99:516,0,298
3    183562276    rs3811725    A    C    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:67,0,70
3    183580750    rs1554397    A    G    303.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:337,24,0
3    183585541    rs1402000    T    C    746.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    1/1:0,25:25:66.16:779,66,0
3    183585883    rs953419    A    G    304.25    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=23;Dels=0.0;FS=3.132;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=13.23;ReadPosRankSum=2.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    0/1:13,10:23:99:334,0,417
3    183586005    rs3749446    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311101    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    183643585    rs56348509    T    C    73.26    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.56;MQ0=0;MQRankSum=-0.55;QD=6.66;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    0/1:3,8:11:99:103,0,106
3    183660806    rs3749441    C    G    221.03    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=20.09;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    0/1:4,7:11:99:251,0,130
3    183663833    rs2292998    T    C    1018.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    1/1:0,32:32:90.25:1052,90,0
3    183665062    rs1016752    G    C    173.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
3    183669396    rs4148586    C    T    499.31    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=3.786;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.705;QD=16.64;ReadPosRankSum=-0.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    0/1:13,17:30:99:529,0,270
3    183677635    rs28365019    T    A    405.33    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.07;DB;DP=44;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=2.6191;MQ=59.48;MQ0=0;MQRankSum=-1.128;QD=9.21;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    0/1:23,21:44:99:435,0,754
3    183679532    rs6443924    A    G    1128.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1161,87,0
3    183681056    rs2292999    T    G    318.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.416;QD=15.91;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476402    GT:AD:DP:GQ:PL    0/1:10,10:20:99:348,0,331
3    183682960    rs2271937    G    A    256.66    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=17;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=15.1;ReadPosRankSum=-1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476402    GT:AD:DP:GQ:PL    0/1:8,9:17:99:287,0,270
3    183685249    rs4148579    T    C    128.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
3    183685534    rs939336    A    G    7005.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=205;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.32;MQ0=0;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=C530;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183685483_183685554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382495    GT:AD:DP:GQ:PL    1/1:0,204:205:99:7005,521,0
3    183689138    rs869417    T    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=12.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:82,6,0
3    183696402    rs1132776    A    G    1541.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=A331;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183696291_183696439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382495    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1575,120,0
3    183699516    rs7636910    T    C    1406.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=Q318;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183699515_183699662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382495    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1440,108,0
3    183700211    rs2293001    C    T    1008.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382494    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1042,78,0
3    183700928    rs2313212    A    G    206.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=29.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382494    GT:AD:DP:GQ:PL    1/1:0,7:7:21.02:239,21,0
3    183703329    rs56373140    G    A    129.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=8.63;ReadPosRankSum=-1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437341    GT:AD:DP:GQ:PL    0/1:9,6:15:99:159,0,338
3    183705184    rs3749438    G    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437341    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
3    183706630    rs6443926    A    C    279.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265586    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
3    183732314    rs141563803    G    GA    208.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=14;HaplotypeScore=72.5957;IndelType=I;MQ=58.1;MQ0=0;QD=16.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334444    GT:AD:DP:GQ:PL    1/1:3,10:13:29.83:250,30,0
3    183754029    rs6792482    T    C    165.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334128    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
3    183754045    rs6779545    C    A    213.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334128    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
3    183754294    rs6443930    G    C    982.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000382489    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1015,75,0
3    183754585    rs56365132    C    T    711.48    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=2.285;DB;DP=44;Dels=0.0;FS=12.032;HRun=1;HaplotypeScore=0.5784;MQ=59.48;MQ0=0;MQRankSum=0.281;QD=16.17;ReadPosRankSum=0.788;SNPEFF_AMINO_ACID_CHANGE=T139;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183754536_183754684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428798    GT:AD:DP:GQ:PL    0/1:17,26:44:99:741,0,492
3    183755822    rs1000952    G    A    1374.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=37.15;SNPEFF_AMINO_ACID_CHANGE=R177H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183755809_183756061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428798    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1408,105,0
3    183756391    rs75040538    C    G    393.34    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.338;DB;DP=30;Dels=0.0;FS=3.891;HRun=0;HaplotypeScore=0.5784;MQ=59.23;MQ0=0;MQRankSum=0.548;QD=13.11;ReadPosRankSum=0.11;SNPEFF_AMINO_ACID_CHANGE=L151V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183756197_183756412;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453435    GT:AD:DP:GQ:PL    0/1:13,17:30:99:423,0,357
3    183756426    rs6799766    T    C    175.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.883;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.959;QD=8.38;ReadPosRankSum=2.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334128    GT:AD:DP:GQ:PL    0/1:12,9:21:99:206,0,361
3    183756441    rs112275937    C    T    191.07    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=16;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=0.5784;MQ=58.79;MQ0=0;MQRankSum=0.423;QD=11.94;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334128    GT:AD:DP:GQ:PL    0/1:9,7:16:99:221,0,210
3    183756637    rs56203055    C    T    849.99    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=44;Dels=0.0;FS=6.451;HRun=0;HaplotypeScore=0.0;MQ=56.44;MQ0=0;MQRankSum=-0.381;QD=19.32;ReadPosRankSum=0.68;SNPEFF_AMINO_ACID_CHANGE=A192;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183756534_183756988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453435    GT:AD:DP:GQ:PL    0/1:14,30:44:99:880,0,355
3    183756702    rs6789754    G    A    776.22    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.805;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.23;MQ0=1;MQRankSum=-0.772;QD=10.21;ReadPosRankSum=0.718;SNPEFF_AMINO_ACID_CHANGE=R214H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183756534_183756988;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453435    GT:AD:DP:GQ:PL    0/1:42,34:76:99:806,0,1022
3    183756742    rs55674402    C    T    643.73    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.931;DB;DP=74;Dels=0.0;FS=2.096;HRun=1;HaplotypeScore=0.0;MQ=51.44;MQ0=1;MQRankSum=-0.897;QD=8.7;ReadPosRankSum=-0.086;SNPEFF_AMINO_ACID_CHANGE=V227;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183756534_183756988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453435    GT:AD:DP:GQ:PL    0/1:43,31:74:99:674,0,1250
3    183756780    rs6765152    A    C    1262.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.25;MQ0=1;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428798    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1296,108,0
3    183756808    rs6789882    G    A    809.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.41;MQ0=0;QD=23.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428798    GT:AD:DP:GQ:PL    1/1:0,34:34:72.18:842,72,0
3    183756836    rs11274156    A    AT    860.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=347.8087;IndelType=I;MQ=32.29;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428798    GT:AD:DP:GQ:PL    1/1:0,25:21:63.14:903,63,0
3    183756837    rs66883074    G    GTCAGTCCAAATT    3160.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=326.8337;IndelType=I;MQ=29.25;MQ0=0;QD=126.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428798    GT:AD:DP:GQ:PL    1/1:12,13:20:57.20:3203,57,0
3    183773250    rs56333453    C    T    151.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=18.94;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    0/1:3,5:8:99:181,0,101
3    183774762    rs6766410    C    A    1375.81    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.321;DB;DP=92;Dels=0.0;FS=0.778;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.477;QD=14.95;ReadPosRankSum=1.213;SNPEFF_AMINO_ACID_CHANGE=N163K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183774663_183774832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    0/1:43,49:92:99:1406,0,1263
3    183774872    rs11432832    G    GA    1810.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=2;HaplotypeScore=90.7006;IndelType=I;MQ=61.22;MQ0=0;QD=41.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1853,129,0
3    183776098    rs7628673    T    C    81.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
3    183776469    rs7617316    C    T    728.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:762,57,0
3    183777210    rs56244916    C    T    477.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.417;QD=19.9;ReadPosRankSum=0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    0/1:9,15:24:99:508,0,234
3    183777919    rs6807271    G    A    158.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=13.23;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    0/1:6,6:12:99:189,0,163
3    183778010    rs6807362    G    C    957.24    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=63;Dels=0.0;FS=3.718;HRun=0;HaplotypeScore=0.9997;MQ=58.89;MQ0=0;MQRankSum=-0.117;QD=15.19;ReadPosRankSum=-0.708;SNPEFF_AMINO_ACID_CHANGE=G405A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183777938_183778459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    0/1:32,31:63:99:987,0,916
3    183778298    rs6807670    G    A    487.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318351    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:520,39,0
3    183801541    rs9826114    G    C    381.98    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.908;DB;DP=24;Dels=0.0;FS=3.982;HRun=3;HaplotypeScore=0.5784;MQ=56.62;MQ0=0;MQRankSum=-2.137;QD=15.92;ReadPosRankSum=-1.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384621    GT:AD:DP:GQ:PL    0/1:10,14:24:99:412,0,293
3    183801557    rs9845948    T    C    332.28    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=26;Dels=0.0;FS=1.54;HRun=0;HaplotypeScore=0.0;MQ=56.89;MQ0=0;MQRankSum=-0.077;QD=12.78;ReadPosRankSum=0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384621    GT:AD:DP:GQ:PL    0/1:12,14:26:99:362,0,354
3    183801649    rs7610048    G    C    339.33    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.52;DB;DP=25;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=0.0;MQ=52.87;MQ0=0;MQRankSum=0.794;QD=13.57;ReadPosRankSum=0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384621    GT:AD:DP:GQ:PL    0/1:11,14:25:99:369,0,324
3    183801709    rs62285842    C    T    236.95    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=18;Dels=0.0;FS=4.868;HRun=0;HaplotypeScore=0.0;MQ=53.98;MQ0=0;MQRankSum=-0.543;QD=13.16;ReadPosRankSum=-1.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384621    GT:AD:DP:GQ:PL    0/1:7,11:18:99:267,0,237
3    183801783    rs7609998    C    G    105.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.365;QD=10.51;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384621    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,191
3    183815439    rs6765267    A    G    635.95    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.726;DB;DP=31;Dels=0.0;FS=2.674;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.254;QD=20.51;ReadPosRankSum=2.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415389    GT:AD:DP:GQ:PL    0/1:11,20:31:99:666,0,338
3    183818416    rs7627615    G    A    1932.21    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.575;DB;DP=129;Dels=0.0;FS=9.133;HRun=0;HaplotypeScore=1.7885;MQ=59.82;MQ0=0;MQRankSum=-1.192;QD=14.98;ReadPosRankSum=-1.642;SNPEFF_AMINO_ACID_CHANGE=A71T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183818273_183818439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415389    GT:AD:DP:GQ:PL    0/1:60,69:129:99:1962,0,1602
3    183818511    rs55683908    A    G    434.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.412;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0967;MQ=59.2;MQ0=0;MQRankSum=0.942;QD=14.97;ReadPosRankSum=-0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335304    GT:AD:DP:GQ:PL    0/1:14,14:29:99:464,0,476
3    183819155    rs7432211    T    C    238.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=15.9;ReadPosRankSum=-1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335304    GT:AD:DP:GQ:PL    0/1:6,9:15:99:268,0,202
3    183823576    rs4912524    T    C    1770.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=S233;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183823553_183823757;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425359    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1803,132,0
3    183861064    rs843359    A    G    123.81    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.26;ReadPosRankSum=-2.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468748    GT:AD:DP:GQ:PL    0/1:5,6:11:99:154,0,169
3    183861243    rs843358    A    G    537.92    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.369;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.66;MQ0=0;MQRankSum=-1.476;QD=10.76;ReadPosRankSum=-1.663;SNPEFF_AMINO_ACID_CHANGE=I587V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183861230_183861353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2B5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273783    GT:AD:DP:GQ:PL    0/1:28,22:50:99:568,0,946
3    183861750    rs843357    A    C    1010.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.149;DB;DP=50;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.9734;MQ=59.54;MQ0=0;MQRankSum=2.089;QD=20.22;ReadPosRankSum=-0.366;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468748    GT:AD:DP:GQ:PL    0/1:20,30:50:99:1041,0,638
3    183884895    rs1709638    C    T    163.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=11.67;ReadPosRankSum=-0.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423300    GT:AD:DP:GQ:PL    0/1:8,6:14:99:193,0,261
3    183895966    rs146953866    T    C    144.51    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.882;DB;DP=26;Dels=0.0;FS=4.205;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.396;QD=5.56;ReadPosRankSum=1.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484469    GT:AD:DP:GQ:PL    0/1:20,6:26:99:175,0,644
3    183896641    rs2231216    T    C    886.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484469    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:920,72,0
3    183896966    rs2231217    G    A    288.24    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.657;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;MQRankSum=0.131;QD=12.53;ReadPosRankSum=0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427072    GT:AD:DP:GQ:PL    0/1:11,12:23:99:318,0,376
3    183900338    rs843367    T    C    79.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.96;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427072    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:110,0,28
3    183900680    rs843366    G    C    411.03    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=34;Dels=0.0;FS=4.363;HRun=0;HaplotypeScore=1.9713;MQ=60.0;MQ0=0;MQRankSum=0.892;QD=12.09;ReadPosRankSum=0.273;SNPEFF_AMINO_ACID_CHANGE=E89D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183900545_183901086;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442686    GT:AD:DP:GQ:PL    0/1:19,15:34:99:441,0,663
3    183900729    rs843365    T    C    334.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.8;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.548;QD=13.94;ReadPosRankSum=1.241;SNPEFF_AMINO_ACID_CHANGE=C106R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183900545_183901086;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442686    GT:AD:DP:GQ:PL    0/1:12,12:24:99:365,0,424
3    183900836    rs843364    G    A    402.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=58.71;MQ0=0;MQRankSum=-0.493;QD=11.17;ReadPosRankSum=-0.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427072    GT:AD:DP:GQ:PL    0/1:20,16:36:99:432,0,653
3    183901192    rs2231223    G    A    452.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.095;DB;DP=33;Dels=0.0;FS=1.393;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=13.7;ReadPosRankSum=1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427072    GT:AD:DP:GQ:PL    0/1:18,15:33:99:482,0,445
3    183904232    rs1709624    T    A    191.83    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.438;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=6.39;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292807    GT:AD:DP:GQ:PL    0/1:20,9:30:99:222,0,588
3    183905103    rs2942056    G    C    70.16    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=7.02;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463685    GT:AD:DP:GQ:PL    0/1:7,3:10:99:100,0,226
3    183906515    rs843345    T    C    73.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.55;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421340    GT:AD:DP:GQ:PL    0/1:3,4:7:99:104,0,107
3    183907032    rs843344    G    C    464.79    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.143;DB;DP=43;Dels=0.0;FS=1.237;HRun=0;HaplotypeScore=0.9967;MQ=59.46;MQ0=0;MQRankSum=-1.495;QD=10.81;ReadPosRankSum=0.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421340    GT:AD:DP:GQ:PL    0/1:27,16:43:99:495,0,916
3    183908890    .    C    T    761.95    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.315;DP=68;Dels=0.0;FS=0.954;HRun=1;HaplotypeScore=2.3001;MQ=59.73;MQ0=0;MQRankSum=0.747;QD=11.21;ReadPosRankSum=-0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421340    GT:AD:DP:GQ:PL    0/1:38,30:68:99:792,0,1131
3    183909163    rs843339    C    T    296.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.134;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.739;QD=13.48;ReadPosRankSum=0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421340    GT:AD:DP:GQ:PL    0/1:11,11:22:99:327,0,292
3    183953972    rs1709657    G    A    34.52    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.75;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=P159;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183953940_183954050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273794    GT:AD:DP:GQ:PL    0/1:4,2:6:64.51:65,0,102
3    183955109    rs843334    C    T    455.23    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.388;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.581;QD=19.79;ReadPosRankSum=-0.484;SNPEFF_AMINO_ACID_CHANGE=P324;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183955014_183955199;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273794    GT:AD:DP:GQ:PL    0/1:8,15:23:99:485,0,260
3    183957467    rs843332    G    T    49.75    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.135;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.211;QD=3.11;ReadPosRankSum=0.404;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397676    GT:AD:DP:GQ:PL    0/1:13,3:16:79.74:80,0,409
3    183959961    rs2668195    A    G    177.45    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=3.233;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=17.74;ReadPosRankSum=1.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397676    GT:AD:DP:GQ:PL    0/1:3,7:10:99:207,0,99
3    183960252    rs706584    A    C    51.66    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=5.17;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423996    GT:AD:DP:GQ:PL    0/1:7,3:10:81.66:82,0,253
3    183961180    rs843331    C    A    79.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.96;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423996    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
3    183975365    rs7633387    C    T    991.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;QD=27.55;SNPEFF_AMINO_ACID_CHANGE=H101Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183975261_183975544;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324557    GT:AD:DP:GQ:PL    1/1:0,36:36:78.25:1025,78,0
3    183976108    rs902415    T    C    1471.96    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.725;DB;DP=113;Dels=0.0;FS=1.57;HRun=0;HaplotypeScore=4.2128;MQ=58.98;MQ0=0;MQRankSum=-0.689;QD=12.91;ReadPosRankSum=-2.139;SNPEFF_AMINO_ACID_CHANGE=F171;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183976076_183977373;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324557    GT:AD:DP:GQ:PL    0/1:53,60:113:99:1502,0,1537
3    183976241    rs6767237    A    G    1584.81    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.86;DB;DP=107;Dels=0.0;FS=2.66;HRun=3;HaplotypeScore=1.5592;MQ=55.58;MQ0=0;MQRankSum=-0.182;QD=14.81;ReadPosRankSum=0.128;SNPEFF_AMINO_ACID_CHANGE=K216E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183976076_183977373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324557    GT:AD:DP:GQ:PL    0/1:47,60:107:99:1615,0,1352
3    183994536    rs843371    A    G    421.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357474    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:455,36,0
3    183995341    rs1001817    C    T    186.63    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=26.66;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474750    GT:AD:DP:GQ:PL    0/1:1,6:7:20.69:217,0,21
3    183995854    rs2272471    G    A    529.86    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=33;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=16.06;ReadPosRankSum=-1.764;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474750    GT:AD:DP:GQ:PL    0/1:12,21:33:99:560,0,396
3    183996068    rs3752904    C    T    297.25    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=47;Dels=0.0;FS=1.379;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.673;QD=6.32;ReadPosRankSum=0.885;SNPEFF_AMINO_ACID_CHANGE=A210;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_183995955_183996101;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359140    GT:AD:DP:GQ:PL    0/1:35,12:47:99:327,0,933
3    183996213    rs843372    C    T    858.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.07;MQ0=0;QD=34.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422932    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:891,69,0
3    184003194    rs1687230    C    T    209.83    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DB;DP=26;Dels=0.0;FS=4.607;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.162;QD=8.07;ReadPosRankSum=-1.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357474    GT:AD:DP:GQ:PL    0/1:17,9:26:99:240,0,639
3    184009586    rs35637422    A    G    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490579    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
3    184010048    rs3914188    G    C    166.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.998;QD=10.42;ReadPosRankSum=-1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430587    GT:AD:DP:GQ:PL    0/1:8,8:16:99:197,0,251
3    184017888    rs55782344    T    C    108.67    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=13.58;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444495    GT:AD:DP:GQ:PL    0/1:3,4:8:99:139,0,102
3    184020100    rs79865218    C    CA    947.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=44.7662;IndelType=I;MQ=59.47;MQ0=0;QD=41.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433010    GT:AD:DP:GQ:PL    1/1:1,22:23:66.22:990,66,0
3    184020542    rs11545169    G    T    957.09    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=70;Dels=0.0;FS=0.915;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.692;QD=13.67;ReadPosRankSum=-0.867;SNPEFF_AMINO_ACID_CHANGE=E154D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184020467_184020611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435761    GT:AD:DP:GQ:PL    0/1:38,32:70:99:987,0,1193
3    184026703    rs6845    C    T    974.39    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.982;DB;DP=68;Dels=0.0;FS=13.633;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.043;QD=14.33;ReadPosRankSum=-0.687;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460628    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1004,0,1055
3    184033408    rs73187631    A    T    73.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.29;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444495    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,104
3    184037533    rs13319149    A    G    280.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=T102A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184037477_184037589;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426123    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
3    184039666    rs2178403    A    G    6492.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=188;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.39;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=M236V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184039070_184039891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434061    GT:AD:DP:GQ:PL    1/1:0,188:188:99:6493,505,0
3    184044433    rs2293605    C    T    322.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.528;QD=16.12;ReadPosRankSum=1.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413967    GT:AD:DP:GQ:PL    0/1:8,12:20:99:352,0,234
3    184045799    rs939317    A    G    1471.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413967    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1504,111,0
3    184046355    rs1879244    C    T    6048.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3481;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413967    GT:AD:DP:GQ:PL    1/1:0,179:179:99:6049,439,0
3    184046470    rs2230571    C    T    1583.89    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=5.326;DB;DP=107;Dels=0.0;FS=0.865;HRun=0;HaplotypeScore=1.7621;MQ=60.0;MQ0=0;MQRankSum=-0.907;QD=14.8;ReadPosRankSum=0.564;SNPEFF_AMINO_ACID_CHANGE=H1139;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184046419_184046544;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435046    GT:AD:DP:GQ:PL    0/1:52,55:107:99:1614,0,1473
3    184062776    rs9839000    A    G    80.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=1.38;QD=13.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265593    GT:AD:DP:GQ:PL    0/1:2,4:6:66.19:110,0,66
3    184064851    .    G    C    712.04    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.561;DP=58;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=12.28;ReadPosRankSum=-0.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310585    GT:AD:DP:GQ:PL    0/1:27,31:58:99:742,0,903
3    184069654    rs4912540    G    A    274.93    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.111;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=57.64;MQ0=0;MQRankSum=-0.933;QD=15.27;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475279    GT:AD:DP:GQ:PL    0/1:8,10:18:99:305,0,258
3    184070675    rs3749223    A    G    632.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=31.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475279    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:665,54,0
3    184071017    rs41266265    G    A    1424.88    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=2.824;DB;DP=113;Dels=0.0;FS=3.586;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.046;QD=12.61;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465231    GT:AD:DP:GQ:PL    0/1:57,56:113:99:1455,0,1697
3    184071019    rs11920716    T    C    1371    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.603;DB;DP=113;Dels=0.0;FS=2.496;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.854;QD=12.13;ReadPosRankSum=-0.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465231    GT:AD:DP:GQ:PL    0/1:59,54:113:99:1401,0,1834
3    184071063    rs9820367    G    C    3417.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.2672;MQ=59.38;MQ0=0;QD=30.51;SNPEFF_AMINO_ACID_CHANGE=T624S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184071038_184071210;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434054    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3417,271,0
3    184072459    rs73189624    G    A    441.67    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=22;Dels=0.0;FS=5.684;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.106;QD=20.08;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465231    GT:AD:DP:GQ:PL    0/1:4,18:22:74.26:472,0,74
3    184075958    rs41266271    C    T    850.64    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.437;DB;DP=52;Dels=0.0;FS=2.581;HRun=2;HaplotypeScore=0.9996;MQ=58.2;MQ0=0;MQRankSum=-0.203;QD=16.36;ReadPosRankSum=-0.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265593    GT:AD:DP:GQ:PL    0/1:23,29:52:99:881,0,696
3    184091149    rs6142    G    T    348    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=21;Dels=0.0;FS=10.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.173;QD=16.57;ReadPosRankSum=0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296223    GT:AD:DP:GQ:PL    0/1:9,12:21:99:378,0,241
3    184094183    rs956732    A    G    276.82    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9053;MQ=60.0;MQ0=0;MQRankSum=-0.559;QD=8.93;ReadPosRankSum=-0.646;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_184094035_184094192;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THPO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000204615    GT:AD:DP:GQ:PL    0/1:20,11:31:99:307,0,690
3    184099206    rs3749229    C    T    176.79    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=13.6;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310236    GT:AD:DP:GQ:PL    0/1:7,6:13:99:207,0,181
3    184099956    rs2239856    G    A    142.62    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.37;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310236    GT:AD:DP:GQ:PL    0/1:1,6:7:21.95:173,0,22
3    184100338    rs73189656    G    A    900.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=5.005;DB;DP=70;Dels=0.0;FS=8.779;HRun=0;HaplotypeScore=1.7172;MQ=58.0;MQ0=0;MQRankSum=1.791;QD=12.87;ReadPosRankSum=-1.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310236    GT:AD:DP:GQ:PL    0/1:40,30:70:99:931,0,1075
3    184100961    rs3833587    G    GT    196.44    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=68.2868;IndelType=I;MQ=61.92;MQ0=0;MQRankSum=1.377;QD=12.28;ReadPosRankSum=-0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310236    GT:AD:DP:GQ:PL    0/1:7,7:16:94.87:235,0,95
3    184102396    rs16858778    C    T    816.86    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.615;DB;DP=36;Dels=0.0;FS=1.599;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.859;QD=22.69;ReadPosRankSum=-0.625;SNPEFF_AMINO_ACID_CHANGE=N134;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184102325_184102481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545352    GT:AD:DP:GQ:PL    0/1:10,25:36:99:847,0,207
3    184102579    rs58542381    A    C    153.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310236    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
3    184103722    rs79419884    A    G    321.62    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.674;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.106;QD=16.93;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310236    GT:AD:DP:GQ:PL    0/1:8,11:19:99:352,0,273
3    184103903    rs16858780    A    C    532.29    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=-0.268;QD=13.65;ReadPosRankSum=-1.648;SNPEFF_AMINO_ACID_CHANGE=M260L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184103834_184103947;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHRD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545352    GT:AD:DP:GQ:PL    0/1:21,18:39:99:562,0,656
3    184144585    rs62287529    A    G    322.49    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.908;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2282;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=11.12;ReadPosRankSum=0.996;SNPEFF_AMINO_ACID_CHANGE=H83R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184144380_184144803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-433C9.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419960    GT:AD:DP:GQ:PL    0/1:17,12:29:99:352,0,494
3    184144646    rs7630982    G    A    613.61    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=1.131;DB;DP=28;Dels=0.0;FS=1.705;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=-2.017;QD=21.91;ReadPosRankSum=-0.344;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184144380_184144803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-433C9.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419960    GT:AD:DP:GQ:PL    0/1:9,19:28:99:644,0,240
3    184288846    rs34135520    C    T    34.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
3    184289152    rs13069661    A    G    711.50    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.385;DB;DP=36;Dels=0.0;FS=3.329;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.61;QD=19.23;ReadPosRankSum=-0.16;SNPEFF_AMINO_ACID_CHANGE=T55;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184289106_184289170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330394    GT:AD:DP:GQ:PL    0/1:15,21:36:99:741,0,435
3    184402122    rs9290796    G    A    113.53    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=7.1;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF2B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444495    GT:AD:DP:GQ:PL    0/1:11,5:16:99:144,0,400
3    184428903    rs9872799    T    G    1300.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.39;MQ0=0;QD=28.26;SNPEFF_AMINO_ACID_CHANGE=E236A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184428156_184429836;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317897    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1333,99,0
3    184429133    rs10656187    A    ATCC    3155.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=0;HaplotypeScore=226.6999;IndelType=I;MQ=56.96;MQ0=0;QD=40.46;SNPEFF_AMINO_ACID_CHANGE=D159GN;SNPEFF_CODON_CHANGE=gat/gGGAat;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_3_184428156_184429836;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317897    GT:AD:DP:GQ:PL    1/1:26,51:78:99:3198,163,0
3    184429414    rs10937187    C    A    1496.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=A66S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184428156_184429836;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317897    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1529,120,0
3    184552325    rs4686792    A    G    272.26    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.592;QD=20.94;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:3,10:13:84.42:302,0,84
3    184557317    rs75232593    T    A    152.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.276;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.6651;MQ=56.95;MQ0=0;MQRankSum=-0.545;QD=10.87;ReadPosRankSum=-0.201;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424721    GT:AD:DP:GQ:PL    0/1:7,7:14:99:182,0,252
3    184561140    rs11462496    G    GA    194.15    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.71;DB;DP=20;FS=0.0;HRun=7;HaplotypeScore=41.0156;IndelType=I;MQ=58.84;MQ0=0;MQRankSum=1.733;QD=9.71;ReadPosRankSum=2.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424463    GT:AD:DP:GQ:PL    0/1:13,7:20:99:233,0,236
3    184573555    rs6443999    C    T    2700.06    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=4.256;DB;DP=178;Dels=0.0;FS=1.17;HRun=0;HaplotypeScore=1.5782;MQ=59.22;MQ0=0;MQRankSum=2.229;QD=15.17;ReadPosRankSum=0.497;SNPEFF_AMINO_ACID_CHANGE=Y362;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184573499_184573606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436792    GT:AD:DP:GQ:PL    0/1:87,91:178:99:2730,0,2563
3    184580917    rs3733165    A    G    665.14    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.533;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.202;MQ=57.39;MQ0=0;MQRankSum=-1.913;QD=12.32;ReadPosRankSum=0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:27,24:54:99:695,0,813
3    184580980    .    C    A    36.62    QDFilter2    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.51;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=9.2793;MQ=50.78;MQ0=0;MQRankSum=-2.824;QD=1.36;ReadPosRankSum=2.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:13,14:27:66.61:67,0,205
3    184588420    rs2305239    A    C    507.08    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.614;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.34;MQ0=0;MQRankSum=-0.182;QD=14.49;ReadPosRankSum=0.611;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465213    GT:AD:DP:GQ:PL    0/1:18,17:35:99:537,0,622
3    184616504    rs9845800    C    T    100.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.51;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:4,4:8:99:130,0,145
3    184631103    rs9821657    G    A    126.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
3    184631117    rs74747627    C    T    37.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.44;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:3,2:5:67.19:67,0,111
3    184633247    rs4686879    A    C    1549.27    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.559;DB;DP=116;Dels=0.0;FS=4.977;HRun=0;HaplotypeScore=3.6019;MQ=59.64;MQ0=0;MQRankSum=-0.372;QD=13.36;ReadPosRankSum=-0.932;SNPEFF_AMINO_ACID_CHANGE=L697;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184633143_184633262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446204    GT:AD:DP:GQ:PL    0/1:61,55:116:99:1579,0,1937
3    184633483    rs9832924    G    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    184642587    rs113242607    A    AT    978.21    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=61;FS=3.55;HRun=13;HaplotypeScore=297.5286;IndelType=I;MQ=57.67;MQ0=0;MQRankSum=-0.653;QD=16.04;ReadPosRankSum=0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:13,45:61:1.83:1016,0,2
3    184644226    rs9290804    G    A    122.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
3    184646028    rs4589907    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
3    184647413    rs4643688    T    C    360.40    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.165;DB;DP=38;Dels=0.0;FS=1.227;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.448;QD=9.48;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=D828;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184647368_184647452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446204    GT:AD:DP:GQ:PL    0/1:23,15:38:99:390,0,768
3    184654166    rs6444004    A    G    2036.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2070,154,0
3    184675359    rs4501092    T    C    1651.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1685,129,0
3    184682214    rs6799328    T    C    367.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:401,30,0
3    184684313    rs4470487    G    A    217.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:250,18,0
3    184684666    rs7652351    T    G    80.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.45;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:2,4:6:67.41:111,0,67
3    184689269    rs7621783    G    A    298.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:331,24,0
3    184689649    rs4686918    G    A    220.79    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.446;QD=9.6;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:11,12:23:99:251,0,393
3    184689650    rs4686919    G    A    220.79    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.508;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.077;QD=9.6;ReadPosRankSum=0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:11,12:23:99:251,0,391
3    184700356    rs4572747    A    C    3581.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=A1049;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184700354_184700435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446204    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3582,268,0
3    184714014    rs9860814    C    T    784.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:817,63,0
3    184717703    rs2291737    T    C    1750.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488255    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1783,135,0
3    184766148    rs3821748    A    G    261.99    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.451;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.2;MQ0=0;MQRankSum=-0.373;QD=9.03;ReadPosRankSum=-2.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:16,13:29:99:292,0,573
3    184766186    rs3821749    A    C    656.78    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=4.808;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.148;QD=14.6;ReadPosRankSum=1.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:25,20:45:99:687,0,862
3    184766301    rs3821750    T    C    1408.36    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=4.646;DB;DP=113;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.933;MQ=59.63;MQ0=0;MQRankSum=-0.084;QD=12.46;ReadPosRankSum=0.055;SNPEFF_AMINO_ACID_CHANGE=I1272T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184766267_184766347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446204    GT:AD:DP:GQ:PL    0/1:66,47:113:99:1438,0,2002
3    184766392    rs3821751    G    A    715.63    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=53;Dels=0.0;FS=1.985;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.182;QD=13.5;ReadPosRankSum=0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:31,22:53:99:746,0,987
3    184769402    rs6783157    A    G    42.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.55;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287546    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:72,0,36
3    184769911    rs2271257    C    T    572.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=4.089;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.723;QD=21.19;ReadPosRankSum=-1.106;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492449    GT:AD:DP:GQ:PL    0/1:9,18:27:99:602,0,220
3    184769941    rs2271258    T    C    339.92    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=21.25;ReadPosRankSum=0.566;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492449    GT:AD:DP:GQ:PL    0/1:5,11:16:99:370,0,158
3    184801094    rs61740263    G    A    704.06    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=0.479;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=20.12;ReadPosRankSum=-0.258;SNPEFF_AMINO_ACID_CHANGE=P152S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_184795838_184801351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335012    GT:AD:DP:GQ:PL    0/1:11,24:35:99:734,0,279
3    184935807    rs35531967    A    C    272.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.75;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHHADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475987    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:305,24,0
3    185046909    rs67210380    AT    A    369.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=65.6726;IndelType=D;MQ=61.43;MQ0=0;QD=24.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424227    GT:AD:DP:GQ:PL    1/1:0,15:15:45.02:412,45,0
3    185046975    rs9863304    T    C    1306.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=36.28;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_185046862_185047037;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443863    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1339,102,0
3    185135448    rs13099317    G    A    320.80    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=53.62;MQ0=0;MQRankSum=-0.038;QD=9.72;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265026    GT:AD:DP:GQ:PL    0/1:17,15:33:99:351,0,487
3    185146702    rs3732577    C    T    504.25    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.262;DB;DP=38;Dels=0.0;FS=1.281;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.558;QD=13.27;ReadPosRankSum=0.822;SNPEFF_AMINO_ACID_CHANGE=S111;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_185146285_185146844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265026    GT:AD:DP:GQ:PL    0/1:21,17:38:99:534,0,561
3    185155430    rs113427759    C    CT    799.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.797;DB;DP=53;FS=0.0;HRun=11;HaplotypeScore=301.4268;IndelType=I;MQ=57.17;MQ0=0;MQRankSum=-0.089;QD=15.08;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265026    GT:AD:DP:GQ:PL    1/1:14,23:53:76.49:841,76,0
3    185155482    rs2304815    A    C    276.57    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-1.631;QD=12.02;ReadPosRankSum=-0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265026    GT:AD:DP:GQ:PL    0/1:12,11:23:99:307,0,417
3    185167519    rs67440576    AT    A    238.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=15;HaplotypeScore=106.3311;IndelType=D;MQ=56.5;MQ0=0;QD=12.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439882    GT:AD:DP:GQ:PL    1/1:2,15:19:45.35:281,45,0
3    185183418    rs667526    G    C    975.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265026    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1009,75,0
3    185212593    rs6798873    T    C    3288.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7944;MQ=59.52;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM41A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467520    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3289,256,0
3    185229464    rs61730237    T    C    965.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=K338;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_185229312_185229485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424591    GT:AD:DP:GQ:PL    1/1:0,28:28:78.23:999,78,0
3    185232169    rs1837882    G    A    1346.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=34.52;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296252    GT:AD:DP:GQ:PL    1/1:1,38:39:82.65:1379,83,0
3    185253095    rs642188    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296252    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
3    185316616    rs4624587    G    A    325.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296257    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:359,27,0
3    185327012    rs73175547    C    T    211.09    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.744;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.712;QD=6.81;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439684    GT:AD:DP:GQ:PL    0/1:23,8:31:99:241,0,723
3    185330303    rs73175548    C    T    361.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430355    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
3    185335252    .    G    C    656.02    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.438;DP=40;Dels=0.0;FS=1.368;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=16.4;ReadPosRankSum=0.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459883    GT:AD:DP:GQ:PL    0/1:17,23:40:99:686,0,532
3    185367124    rs77247478    G    A    523.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=1.474;QD=13.1;ReadPosRankSum=0.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494906    GT:AD:DP:GQ:PL    0/1:20,20:40:99:554,0,696
3    185431283    rs17826758    A    G    2070.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.379;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.64;MQ0=0;MQRankSum=-0.217;QD=32.35;ReadPosRankSum=-0.325;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C3orf65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296270    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2103,118,0
3    185655454    rs1862904    A    G    258.96    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.572;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=1.429;QD=13.63;ReadPosRankSum=-0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342294    GT:AD:DP:GQ:PL    0/1:10,9:19:99:289,0,334
3    185692938    rs76532111    A    AT    1612.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=9;HaplotypeScore=132.3453;IndelType=I;MQ=60.18;MQ0=0;QD=31.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-443P15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436375    GT:AD:DP:GQ:PL    1/1:3,49:52:99:1655,150,0
3    185693117    rs6809863    T    C    2868.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.72;MQ0=0;QD=34.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-443P15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422108    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2901,223,0
3    185697801    rs74901373    A    G    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-443P15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306399    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
3    185802064    .    G    A    97.68    HaplotypeScoreFilter13;QDFilter2    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.595;DP=63;Dels=0.02;FS=36.222;HRun=4;HaplotypeScore=61.721;MQ=45.26;MQ0=0;MQRankSum=-3.104;QD=1.53;ReadPosRankSum=3.954;SNPEFF_AMINO_ACID_CHANGE=L80F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_185801958_185802069;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422039    GT:AD:DP:GQ:PL    0/1:24,38:63:99:128,0,838
3    185802069    .    GC    G    36.93    QDFilter2    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DP=60;FS=11.212;HRun=1;HaplotypeScore=564.3014;IndelType=D;MQ=44.1;MQ0=0;MQRankSum=-1.872;QD=0.62;ReadPosRankSum=1.018;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000422039    GT:AD:DP:GQ:PL    0/1:53,6:60:75.96:76,0,791
3    185824004    rs1516725    T    C    36.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306376    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
3    185879296    rs13073156    T    C    263.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:296,21,0
3    185882643    rs4686741    C    G    985.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    1/1:1,29:30:75.25:1019,75,0
3    185960192    rs6799929    A    G    102.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:135,12,0
3    185960414    rs12489063    G    A    223.98    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.0;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    0/1:6,8:14:99:254,0,208
3    185982955    rs3815620    G    A    138.45    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=11.54;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437018    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,219
3    185982972    rs3815619    T    C    213.47    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.964;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-2.011;QD=13.34;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437018    GT:AD:DP:GQ:PL    0/1:9,7:16:99:243,0,314
3    185990096    rs2193587    C    T    439    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.02;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.02;QD=14.16;ReadPosRankSum=-0.138;SNPEFF_AMINO_ACID_CHANGE=R316K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_185990044_185990132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    0/1:15,16:31:99:469,0,499
3    185998286    rs1541612    A    G    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
3    186006566    rs710443    T    C    790.08    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.789;DB;DP=78;Dels=0.0;FS=4.534;HRun=0;HaplotypeScore=1.7987;MQ=60.0;MQ0=0;MQRankSum=1.205;QD=10.13;ReadPosRankSum=0.657;SNPEFF_AMINO_ACID_CHANGE=V159;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186006499_186006669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    0/1:43,34:78:99:820,0,1351
3    186006618    rs1004588    G    C    1274.80    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=92;Dels=0.0;FS=5.577;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.131;QD=13.86;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=T142S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186006499_186006669;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    0/1:43,49:92:99:1305,0,1167
3    186015283    rs3819860    A    G    822.38    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.123;DB;DP=57;Dels=0.0;FS=1.125;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.205;QD=14.43;ReadPosRankSum=-0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    0/1:22,35:57:99:852,0,723
3    186015303    rs3819859    A    G    775.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.444;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.928;QD=18.46;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    0/1:18,24:42:99:806,0,557
3    186015315    rs3819858    T    C    747.13    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=40;Dels=0.0;FS=9.103;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.505;QD=18.68;ReadPosRankSum=-0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGKG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265022    GT:AD:DP:GQ:PL    0/1:17,23:40:99:777,0,555
3    186276393    rs9854418    C    T    316.65    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.799;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.999;QD=17.59;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338733    GT:AD:DP:GQ:PL    0/1:8,10:18:99:347,0,229
3    186287777    rs2889755    T    C    371.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439351    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:404,30,0
3    186290243    rs143950149    G    A    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265028    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
3    186293820    rs2280390    T    G    62.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265028    GT:AD:DP:GQ:PL    1/1:0,3:3:9:95,9,0
3    186295417    rs67708239    A    AT    628.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.561;DB;DP=33;FS=0.0;HRun=13;HaplotypeScore=133.8534;IndelType=I;MQ=59.59;MQ0=0;MQRankSum=-0.223;QD=19.06;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265028    GT:AD:DP:GQ:PL    1/1:5,26:33:44.50:671,45,0
3    186299090    .    T    C    675.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.503;DP=40;Dels=0.0;FS=4.187;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.0;QD=16.9;ReadPosRankSum=0.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464877    GT:AD:DP:GQ:PL    0/1:15,25:40:99:706,0,472
3    186302391    rs57687386    A    ATTGTGTGTGTGT    2750.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=231.976;IndelType=I;MQ=53.98;MQ0=0;QD=94.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265028    GT:AD:DP:GQ:PL    1/1:4,19:29:80.99:2793,81,0
3    186336176    rs2070635    A    G    107.31    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=9.76;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478441    GT:AD:DP:GQ:PL    0/1:7,4:11:99:137,0,212
3    186337713    rs4917    T    C    689.61    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.547;DB;DP=38;Dels=0.0;FS=1.383;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=18.15;ReadPosRankSum=0.99;SNPEFF_AMINO_ACID_CHANGE=M248T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186337646_186337729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411641    GT:AD:DP:GQ:PL    0/1:12,26:38:99:720,0,367
3    186337827    rs2518136    T    C    112.24    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=10.2;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478441    GT:AD:DP:GQ:PL    0/1:5,6:11:99:142,0,176
3    186338233    rs1029353    G    A    132.24    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=10.17;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478441    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,250
3    186338382    rs4918    G    C    2268.83    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.096;DB;DP=158;Dels=0.01;FS=2.047;HRun=1;HaplotypeScore=2.8305;MQ=59.71;MQ0=0;MQRankSum=-0.868;QD=14.27;ReadPosRankSum=-0.315;SNPEFF_AMINO_ACID_CHANGE=S256T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186338375_186339107;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411641    GT:AD:DP:GQ:PL    0/1:76,82:158:99:2299,0,2391
3    186338425    rs1071592    A    C    2290.40    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=6.294;DB;DP=178;Dels=0.0;FS=7.785;HRun=3;HaplotypeScore=4.2629;MQ=59.74;MQ0=0;MQRankSum=-0.598;QD=12.87;ReadPosRankSum=0.641;SNPEFF_AMINO_ACID_CHANGE=T270;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186338375_186339107;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411641    GT:AD:DP:GQ:PL    0/1:95,83:178:99:2320,0,2669
3    186358366    rs1047115    A    C    1834.30    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.891;DB;DP=180;Dels=0.0;FS=3.601;HRun=1;HaplotypeScore=3.3202;MQ=59.74;MQ0=0;MQRankSum=-0.234;QD=10.19;ReadPosRankSum=0.405;SNPEFF_AMINO_ACID_CHANGE=S39;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186358149_186358474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FETUB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265029    GT:AD:DP:GQ:PL    0/1:105,75:180:99:1864,0,3389
3    186358768    rs66965282    A    G    68.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.56;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FETUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265029    GT:AD:DP:GQ:PL    0/1:5,3:8:98.44:98,0,181
3    186360409    rs3733159    T    G    401.01    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.074;DB;DP=29;Dels=0.0;FS=3.485;HRun=2;HaplotypeScore=0.8941;MQ=59.36;MQ0=0;MQRankSum=1.776;QD=13.83;ReadPosRankSum=0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FETUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265029    GT:AD:DP:GQ:PL    0/1:16,13:29:99:431,0,574
3    186370333    rs1131364    G    T    1200.38    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.451;DB;DP=75;Dels=0.0;FS=5.292;HRun=1;HaplotypeScore=0.734;MQ=59.69;MQ0=0;MQRankSum=-0.037;QD=16.01;ReadPosRankSum=-0.409;SNPEFF_AMINO_ACID_CHANGE=V206;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186370052_186370879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FETUB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539949    GT:AD:DP:GQ:PL    0/1:35,40:75:99:1230,0,1033
3    186386664    rs11442239    T    TA    966.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=9;HaplotypeScore=105.6615;IndelType=I;MQ=59.03;MQ0=0;QD=30.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468154    GT:AD:DP:GQ:PL    1/1:2,29:32:93.08:1009,93,0
3    186388028    rs2555515    T    C    36.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468154    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:67,0,32
3    186389559    rs10770    T    C    328.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.923;DB;DP=37;Dels=0.0;FS=3.511;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.185;QD=8.87;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=I180T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186389412_186389578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000232003    GT:AD:DP:GQ:PL    0/1:24,12:37:99:358,0,805
3    186390627    rs9898    C    T    813.82    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=56;Dels=0.0;FS=2.316;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.329;QD=14.53;ReadPosRankSum=-0.413;SNPEFF_AMINO_ACID_CHANGE=P204S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186390576_186390656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000232003    GT:AD:DP:GQ:PL    0/1:26,30:56:99:844,0,826
3    186393095    rs2378122    T    A    56.50    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.303;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.7511;MQ=42.6;MQ0=0;MQRankSum=2.365;QD=3.32;ReadPosRankSum=-2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232003    GT:AD:DP:GQ:PL    1/1:5,12:17:9:89,9,0
3    186393097    rs7428891    T    A    35.63    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.7511;MQ=42.6;MQ0=0;MQRankSum=-0.434;QD=2.1;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232003    GT:AD:DP:GQ:PL    1/1:2,15:17:6.02:67,6,0
3    186395180    rs7629680    T    C    373.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=31.14;SNPEFF_AMINO_ACID_CHANGE=H362;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186394836_186396029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000232003    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:407,33,0
3    186395436    rs1042445    C    T    651.65    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.542;DB;DP=51;Dels=0.0;FS=8.293;HRun=0;HaplotypeScore=1.782;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=12.78;ReadPosRankSum=-0.175;SNPEFF_AMINO_ACID_CHANGE=R448C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186394836_186396029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000232003    GT:AD:DP:GQ:PL    0/1:26,25:51:99:682,0,615
3    186395572    rs1042464    A    T    815.77    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.066;DB;DP=79;Dels=0.0;FS=4.565;HRun=1;HaplotypeScore=0.8321;MQ=59.71;MQ0=0;MQRankSum=-0.894;QD=10.33;ReadPosRankSum=0.455;SNPEFF_AMINO_ACID_CHANGE=N493I;SNPEFF_CODON_CHANGE=aAt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186394836_186396029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000232003    GT:AD:DP:GQ:PL    0/1:45,33:79:99:846,0,1406
3    186435370    rs1050274    G    A    1084.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.348;DB;DP=80;Dels=0.0;FS=0.855;HRun=0;HaplotypeScore=1.7046;MQ=60.0;MQ0=0;MQRankSum=-0.446;QD=13.56;ReadPosRankSum=-1.976;SNPEFF_AMINO_ACID_CHANGE=L13;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186435120_186435526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1114,0,1221
3    186435561    rs13072823    G    A    221.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.276;DB;DP=24;Dels=0.0;FS=2.706;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.806;QD=9.23;ReadPosRankSum=-0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    0/1:16,8:24:99:252,0,524
3    186435583    rs13095338    T    C    85.68    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=58.55;MQ0=0;MQRankSum=-1.699;QD=5.36;ReadPosRankSum=0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    0/1:11,5:16:99:116,0,366
3    186437661    rs2304451    G    C    47.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    186437944    rs5029980    T    C    245.47    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.393;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=6.46;ReadPosRankSum=-0.359;SNPEFF_AMINO_ACID_CHANGE=D70;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186437894_186438004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432028    GT:AD:DP:GQ:PL    0/1:27,11:38:99:275,0,812
3    186442705    rs1656919    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
3    186442707    rs1648711    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
3    186442747    rs1656920    G    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
3    186442833    rs1656921    G    C    451.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:484,36,0
3    186443018    rs1656922    T    C    983.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=35.14;SNPEFF_AMINO_ACID_CHANGE=M166T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186442877_186443049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432028    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1017,78,0
3    186449582    rs1648698    G    C    70.13    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.02;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,149
3    186450069    rs1624569    T    C    38.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265023    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:68,0,33
3    186501502    rs266720    C    A    188    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.925;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.502;QD=6.71;ReadPosRankSum=-1.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323963    GT:AD:DP:GQ:PL    0/1:17,11:28:99:218,0,517
3    186503496    rs57904146    T    C    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441007    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
3    186504148    rs266718    T    C    103.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.876;QD=10.33;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441007    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,178
3    186505706    rs12630327    A    C    186.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.311;QD=10.34;ReadPosRankSum=-0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441007    GT:AD:DP:GQ:PL    0/1:10,8:18:99:216,0,352
3    186507757    rs1047148    G    A    361.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.435;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.491;QD=14.45;ReadPosRankSum=-0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323963    GT:AD:DP:GQ:PL    0/1:12,12:24:99:391,0,346
3    186508312    rs266759    C    T    140.79    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323963    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:171,0,25
3    186508357    rs266758    T    C    98.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323963    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:131,12,0
3    186509517    rs187868    G    A    724.42    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.176;QD=15.75;ReadPosRankSum=1.245;SNPEFF_AMINO_ACID_CHANGE=A266;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186509514_186509639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296273    GT:AD:DP:GQ:PL    0/1:20,26:46:99:754,0,505
3    186519136    rs1648703    A    C    59.35    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.42;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411792    GT:AD:DP:GQ:PL    0/1:3,5:8:89.34:89,0,94
3    186519141    rs1656941    A    C    62.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411792    GT:AD:DP:GQ:PL    0/1:3,4:7:80.87:93,0,81
3    186572642    rs1501298    G    A    389.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADIPOQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320741    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:423,33,0
3    186617938    rs74463977    T    TC    302.72    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.949;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=119.997;IndelType=I;MQ=57.97;MQ0=0;MQRankSum=-0.249;QD=13.16;ReadPosRankSum=-1.528;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-42D20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412545    GT:AD:DP:GQ:PL    0/1:14,9:23:99:342,0,404
3    186617969    rs4686442    T    G    1088.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-42D20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412545    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1122,84,0
3    186792241    rs4686847    C    T    196.11    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.093;QD=15.09;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427315    GT:AD:DP:GQ:PL    0/1:6,7:13:99:226,0,186
3    186792292    rs12636803    C    A    121.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.28;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427315    GT:AD:DP:GQ:PL    0/1:1,4:5:24.26:151,0,24
3    186793242    rs2239612    G    A    158.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.426;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.073;QD=13.24;ReadPosRankSum=0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427315    GT:AD:DP:GQ:PL    0/1:6,6:12:99:189,0,199
3    186793729    rs1042642    A    G    171.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.577;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=17.1;ReadPosRankSum=1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427315    GT:AD:DP:GQ:PL    0/1:4,6:10:99:201,0,128
3    186921531    rs9868164    A    T    549.26    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=40;Dels=0.0;FS=12.474;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.972;QD=13.73;ReadPosRankSum=-0.127;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312295    GT:AD:DP:GQ:PL    0/1:19,21:40:99:579,0,570
3    186954285    rs710452    A    G    2504.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.15;MQ0=0;QD=30.54;SNPEFF_AMINO_ACID_CHANGE=P345;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_186951872_186954355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392472    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2537,202,0
3    186959042    rs3815623    G    A    42.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296280    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
3    186961478    rs710460    A    G    1360.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169293    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1394,105,0
3    186969634    rs698092    A    G    454.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392475    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:488,36,0
3    186970697    rs3733006    A    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
3    186970808    rs698094    A    G    204.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392475    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:237,18,0
3    187009351    rs16861895    C    G    1307.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169293    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1340,102,0
3    187009372    rs16861896    G    A    1603    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.109;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.97;QD=32.06;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169293    GT:AD:DP:GQ:PL    1/1:1,49:50:84.65:1636,85,0
3    187009412    rs72549254    G    A    2338.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.181;DB;DP=74;Dels=0.0;FS=3.459;HRun=0;HaplotypeScore=0.9998;MQ=59.38;MQ0=0;MQRankSum=-0.264;QD=31.6;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169293    GT:AD:DP:GQ:PL    1/1:2,72:74:99:2372,139,0
3    187009738    rs78795981    T    C    505.88    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.35;MQ0=0;QD=9.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296280    GT:AD:DP:GQ:PL    1/1:0,52:52:62.87:539,63,0
3    187009739    rs193149924    G    A    495.63    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.21;MQ0=0;QD=9.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296280    GT:AD:DP:GQ:PL    1/1:0,51:51:62.86:529,63,0
3    187009742    rs75502847    T    C    968.90    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.38;MQ0=0;QD=19.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296280    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1002,108,0
3    187009760    rs74342018    G    C    1272.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.95;MQ0=0;QD=32.64;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169293    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1306,99,0
3    187086081    rs5855133    TCAGA    T    698.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=68.3777;IndelType=D;MQ=54.44;MQ0=0;QD=53.76;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259030    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:741,39,0
3    187088656    rs1047584    C    T    331.93    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.439;DB;DP=26;Dels=0.0;FS=1.714;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.208;QD=12.77;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=T79I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187088576_187089864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259030    GT:AD:DP:GQ:PL    0/1:15,11:26:99:362,0,479
3    187088812    rs3821812    C    T    407.02    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.916;DB;DP=38;Dels=0.0;FS=10.352;HRun=0;HaplotypeScore=1.9833;MQ=60.0;MQ0=0;MQRankSum=-0.046;QD=10.71;ReadPosRankSum=0.169;SNPEFF_AMINO_ACID_CHANGE=T131M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187088576_187089864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259030    GT:AD:DP:GQ:PL    0/1:21,17:38:99:437,0,699
3    187088903    rs1533595    C    A    134.51    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.884;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.78;QD=3.74;ReadPosRankSum=-0.476;SNPEFF_AMINO_ACID_CHANGE=I161;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187088576_187089864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259030    GT:AD:DP:GQ:PL    0/1:28,8:36:99:165,0,1040
3    187088926    rs1533594    G    A    1592.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_AMINO_ACID_CHANGE=C169Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187088576_187089864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259030    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1626,126,0
3    187089031    rs1003995    C    A    574.72    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.374;DB;DP=49;Dels=0.0;FS=6.304;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.152;QD=11.73;ReadPosRankSum=0.798;SNPEFF_AMINO_ACID_CHANGE=A204D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187088576_187089864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259030    GT:AD:DP:GQ:PL    0/1:28,21:49:99:605,0,885
3    187386972    rs35517186    C    T    3115.29    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.965;DB;DP=210;Dels=0.0;FS=11.575;HRun=1;HaplotypeScore=3.7683;MQ=59.67;MQ0=0;MQRankSum=1.285;QD=14.83;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=E78K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187386694_187387065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287641    GT:AD:DP:GQ:PL    0/1:101,109:210:99:3145,0,3279
3    187416666    rs11927120    C    T    286.22    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.247;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.85;MQ0=4;MQRankSum=0.265;QD=11.45;ReadPosRankSum=0.794;SNPEFF_AMINO_ACID_CHANGE=G100S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187416047_187416799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358241    GT:AD:DP:GQ:PL    0/1:14,10:25:99:316,0,252
3    187419661    rs113681515    G    GCCTGCC    2423.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=104.3587;IndelType=I;MQ=38.96;MQ0=0;QD=96.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358241    GT:AD:DP:GQ:PL    1/1:1,19:25:75.25:2465,75,0
3    187419728    rs9812190    G    A    1022.91    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.046;DB;DP=66;Dels=0.0;FS=5.192;HRun=2;HaplotypeScore=0.0;MQ=53.91;MQ0=0;MQRankSum=-0.22;QD=15.5;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358241    GT:AD:DP:GQ:PL    0/1:29,37:66:99:1053,0,852
3    187419816    rs61754877    T    C    1104.81    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=2.109;DB;DP=101;Dels=0.0;FS=8.186;HRun=0;HaplotypeScore=2.852;MQ=57.92;MQ0=0;MQRankSum=0.287;QD=10.94;ReadPosRankSum=1.43;SNPEFF_AMINO_ACID_CHANGE=N34S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187419753_187420345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358241    GT:AD:DP:GQ:PL    0/1:59,42:101:99:1135,0,1716
3    187420218    rs2293244    C    T    95.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.58;ReadPosRankSum=0.876;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_187420154_187420327;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-211G3.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437407    GT:AD:DP:GQ:PL    0/1:5,4:9:99:125,0,178
3    187420445    rs4389470    C    T    202.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-211G3.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437407    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
3    187443314    rs61732778    G    A    769.05    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.855;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.26;MQ0=0;MQRankSum=0.049;QD=15.08;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=C548;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187443287_187443417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450123    GT:AD:DP:GQ:PL    0/1:24,26:51:99:799,0,603
3    187446211    rs2229362    C    T    174    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=21.75;ReadPosRankSum=0.747;SNPEFF_AMINO_ACID_CHANGE=A493T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187446148_187446332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000232014    GT:AD:DP:GQ:PL    0/1:1,7:8:8.56:204,0,9
3    187446390    rs41268621    C    G    103.17    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=7.37;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430339    GT:AD:DP:GQ:PL    0/1:10,4:14:99:133,0,280
3    187446493    rs6795621    A    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430339    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    187448009    rs1491996    T    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430339    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
3    187450067    rs77299262    T    C    209.24    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.365;QD=14.95;ReadPosRankSum=-1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470319    GT:AD:DP:GQ:PL    0/1:6,8:14:99:239,0,209
3    187450128    rs4417855    C    T    864.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.615;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.286;QD=27.89;ReadPosRankSum=-0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470319    GT:AD:DP:GQ:PL    1/1:1,30:31:29.99:898,30,0
3    187450270    rs4387955    C    G    257.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=17.15;ReadPosRankSum=-0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470319    GT:AD:DP:GQ:PL    0/1:6,9:15:99:287,0,207
3    187450354    rs76287110    T    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470319    GT:AD:DP:GQ:PL    0/1:2,2:4:65.32:71,0,65
3    187451113    rs1880102    G    A    119.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470319    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
3    187451609    rs1880101    A    G    1778.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=59.09;MQ0=0;QD=34.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470319    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1812,132,0
3    187896912    rs13096262    G    A    783.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=57.46;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414139    GT:AD:DP:GQ:PL    1/1:0,26:26:66.18:816,66,0
3    187897059    rs13096615    G    A    2788.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=A30T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_187896331_187898598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022498.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392468    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2822,211,0
3    187897424    rs4577458    A    C    316.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414139    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:350,27,0
3    188123680    rs10591407    TC    T    265.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DB;DP=10;FS=6.99;HRun=1;HaplotypeScore=124.8476;IndelType=D;MQ=38.03;MQ0=0;MQRankSum=-1.393;QD=26.51;ReadPosRankSum=1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312675    GT:AD:DP:GQ:PL    1/1:2,8:10:23.85:307,24,0
3    188123682    .    TTTC    T    347.71    PASS    AC=2;AF=1.00;AN=2;DP=10;FS=0.0;HRun=0;HaplotypeScore=127.9232;IndelType=D;MQ=38.03;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312675    GT:AD:DP:GQ:PL    1/1:2,8:10:27.09:390,27,0
3    188123698    rs7640006    C    T    311.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.3;MQ0=0;QD=23.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312675    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:344,30,0
3    188123819    rs3732911    T    G    3298.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.73;MQ0=0;QD=39.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312675    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3298,247,0
3    188202550    rs2067078    A    T    1492.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414139    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1525,117,0
3    188202582    rs1559814    G    T    1152.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414139    GT:AD:DP:GQ:PL    1/1:0,29:29:87.26:1185,87,0
3    188242689    rs57139663    T    A    275.75    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.978;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=33.0522;MQ=49.5;MQ0=0;MQRankSum=2.927;QD=11.49;ReadPosRankSum=-1.855;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420410    GT:AD:DP:GQ:PL    1/1:9,8:24:24.08:309,24,0
3    188326926    .    C    CT    1528.11    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.128;DP=135;FS=1.377;HRun=8;HaplotypeScore=346.6954;IndelType=I;MQ=59.77;MQ0=0;MQRankSum=0.705;QD=11.32;ReadPosRankSum=1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312675    GT:AD:DP:GQ:PL    0/1:78,57:135:99:1567,0,1479
3    188327461    rs1059380    C    T    1350.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=34.63;SNPEFF_AMINO_ACID_CHANGE=D151;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_188327009_188327632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415906    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1384,105,0
3    188478235    rs9844854    T    C    30.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=44.58;MQ0=0;QD=10.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471917    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:62,6,0
3    188590358    rs4687001    C    T    1653.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312675    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1686,126,0
3    188591996    rs73199043    G    A    30.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.53;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312675    GT:AD:DP:GQ:PL    0/1:2,2:4:60.11:60,0,72
3    188933213    rs3821734    C    T    232.11    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.466;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=8.93;ReadPosRankSum=1.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412373    GT:AD:DP:GQ:PL    0/1:17,9:26:99:262,0,509
3    188937307    rs5855244    GAA    G    194.56    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=32;FS=6.923;HRun=15;HaplotypeScore=177.9512;IndelType=D;MQ=56.65;MQ0=0;MQRankSum=1.517;QD=6.08;ReadPosRankSum=-1.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412373    GT:AD:DP:GQ:PL    0/1:11,11:32:99:234,0,369
3    189028117    rs113638431    A    AT    225.77    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.024;DB;DP=17;FS=0.0;HRun=13;HaplotypeScore=69.9503;IndelType=I;MQ=59.28;MQ0=0;MQRankSum=-0.934;QD=13.28;ReadPosRankSum=-0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345063    GT:AD:DP:GQ:PL    0/1:4,12:17:5.95:264,0,6
3    189033292    rs6773831    C    G    169.10    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.845;DB;DP=26;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.029;QD=6.5;ReadPosRankSum=1.252;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345063    GT:AD:DP:GQ:PL    0/1:18,8:26:99:199,0,530
3    189033298    rs9827737    C    T    188.88    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=25;Dels=0.0;FS=1.548;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.477;QD=7.56;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345063    GT:AD:DP:GQ:PL    0/1:16,9:25:99:219,0,519
3    189349247    rs28673064    A    T    1922.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.97;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_189349216_189349366;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TP63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264731    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1956,147,0
3    189455380    rs76313891    A    G    39.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.76;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264731    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:69,0,73
3    189507518    rs34201045    C    CAGAG    1710.03    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.851;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=170.1156;IndelType=I;MQ=56.42;MQ0=0;MQRankSum=-0.717;QD=38.86;ReadPosRankSum=-0.863;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264731    GT:AD:DP:GQ:PL    0/1:23,20:44:99:1749,0,1128
3    189586630    rs16864880    C    G    274.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.766;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=0.884;QD=17.18;ReadPosRankSum=0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434928    GT:AD:DP:GQ:PL    0/1:6,10:16:99:305,0,202
3    189586876    rs7624324    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434928    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    189604149    rs1554131    T    G    405.21    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.55;DB;DP=38;Dels=0.0;FS=4.388;HRun=0;HaplotypeScore=0.9332;MQ=58.78;MQ0=0;MQRankSum=-0.117;QD=10.66;ReadPosRankSum=-0.029;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418709    GT:AD:DP:GQ:PL    0/1:21,17:38:99:435,0,663
3    189604160    rs1345186    T    C    609.35    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.416;DB;DP=42;Dels=0.0;FS=10.623;HRun=0;HaplotypeScore=0.9332;MQ=58.89;MQ0=0;MQRankSum=1.826;QD=14.51;ReadPosRankSum=-1.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418709    GT:AD:DP:GQ:PL    0/1:20,22:42:99:639,0,604
3    189681558    rs1719581    C    G    249.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467131    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:283,21,0
3    189689904    rs710543    A    G    328.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470925    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:361,27,0
3    189690861    rs710545    T    A    564.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470925    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:598,48,0
3    189692698    rs710547    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319332    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
3    189702200    rs710558    T    C    519.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426003    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:553,42,0
3    189702395    rs11311050    TA    T    1582.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DB;DP=80;FS=0.0;HRun=11;HaplotypeScore=249.923;IndelType=D;MQ=58.15;MQ0=0;MQRankSum=-1.18;QD=19.78;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426003    GT:AD:DP:GQ:PL    1/1:11,68:80:99:1624,174,0
3    189702583    rs710559    A    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426003    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    189705294    .    C    T    89.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.708;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=10.3076;MQ=48.16;MQ0=0;MQRankSum=-2.513;QD=3.2;ReadPosRankSum=3.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426003    GT:AD:DP:GQ:PL    0/1:12,16:28:99:119,0,332
3    189705542    rs3114672    A    G    575.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=28.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426003    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:609,45,0
3    189712010    rs1719600    G    A    1283.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.78;MQ0=0;QD=29.17;SNPEFF_AMINO_ACID_CHANGE=H232;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_189711883_189712072;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319332    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1316,102,0
3    189712089    rs57754021    G    A    386.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.9895;MQ=51.88;MQ0=0;QD=19.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319332    GT:AD:DP:GQ:PL    1/1:0,20:20:45.03:419,45,0
3    189712090    rs1719598    G    A    384.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.9895;MQ=51.42;MQ0=0;QD=20.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319332    GT:AD:DP:GQ:PL    1/1:0,19:19:45.02:418,45,0
3    189712094    .    A    AAAAC    626.25    PASS    AC=2;AF=1.00;AN=2;DP=21;FS=0.0;HRun=0;HaplotypeScore=244.6773;IndelType=I;MQ=51.94;MQ0=0;QD=29.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319332    GT:AD:DP:GQ:PL    1/1:10,10:21:33.11:668,33,0
3    189713488    rs1522931    A    T    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319332    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
3    189837993    rs710596    G    A    84.41    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-1.495;QD=12.06;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319332    GT:AD:DP:GQ:PL    0/1:2,5:7:54.56:114,0,55
3    190030680    rs9869263    A    G    3960.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9638;MQ=59.83;MQ0=0;QD=29.34;SNPEFF_AMINO_ACID_CHANGE=G123;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_190030661_190030825;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295522    GT:AD:DP:GQ:PL    1/1:0,135:135:99:3961,325,0
3    190030989    rs10513846    G    A    37.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295522    GT:AD:DP:GQ:PL    0/1:3,2:5:67.83:68,0,112
3    190157898    rs6767754    G    A    139.92    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=11.66;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM207;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354905    GT:AD:DP:GQ:PL    0/1:7,5:12:99:170,0,252
3    190165800    rs1346016    T    G    71.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.96;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM207;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354905    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,178
3    190282197    rs6764468    G    A    284.36    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.934;DB;DP=22;Dels=0.0;FS=7.104;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=12.93;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    0/1:12,10:22:99:314,0,449
3    190322271    rs6444440    T    C    205.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=29.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422625    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:238,21,0
3    190322277    rs2072586    A    G    248.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=35.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422625    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
3    190327020    rs41268633    A    G    270.59    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.292;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.456;QD=13.53;ReadPosRankSum=1.671;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422625    GT:AD:DP:GQ:PL    0/1:11,9:20:99:301,0,383
3    190333162    rs35429399    TG    T    2797.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.0;HRun=1;HaplotypeScore=184.4745;IndelType=D;MQ=61.09;MQ0=0;QD=41.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2840,205,0
3    190333322    rs34581855    A    G    216.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:249,21,0
3    190338039    rs11368884    C    CT    728.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.89;DB;DP=33;FS=0.0;HRun=13;HaplotypeScore=112.9816;IndelType=I;MQ=59.73;MQ0=0;MQRankSum=0.201;QD=21.42;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:4,29:33:67.11:770,67,0
3    190338412    rs1015704    G    A    259.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
3    190341241    rs4687160    C    A    1216.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:0,36:36:93.28:1250,93,0
3    190341292    rs4687161    C    T    778.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=58.05;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:0,24:24:63.16:812,63,0
3    190341342    rs4687162    A    G    231.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:264,21,0
3    190344871    rs2885372    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
3    190345043    rs10538189    TTTTTG    T    1111.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=166.9507;IndelType=D;MQ=46.53;MQ0=0;QD=44.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:12,13:25:63.22:1154,63,0
3    190345098    rs74584862    GT    G    530.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=10;HaplotypeScore=157.0175;IndelType=D;MQ=48.46;MQ0=0;QD=21.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:4,21:25:65.96:573,66,0
3    190347391    rs7611887    C    T    517.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:550,42,0
3    190362220    rs34590034    A    T    443.99    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.472;DB;DP=37;Dels=0.0;FS=3.893;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.158;QD=12.0;ReadPosRankSum=0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    0/1:20,17:37:99:474,0,584
3    190362339    rs34531749    G    A    108.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=15.56;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    0/1:3,4:7:99:139,0,99
3    190363594    rs34879831    G    A    318.20    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.36;DB;DP=29;Dels=0.0;FS=9.6;HRun=2;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.101;QD=10.97;ReadPosRankSum=0.157;SNPEFF_AMINO_ACID_CHANGE=K436;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_190363488_190363631;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000072516    GT:AD:DP:GQ:PL    0/1:18,11:29:99:348,0,611
3    190575882    rs9811768    C    G    84.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.82;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-332P22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442080    GT:AD:DP:GQ:PL    0/1:1,4:5:30.97:114,0,31
3    190576593    rs1393055    A    T    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-332P22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442080    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:75,0,30
3    190578566    rs13075089    A    G    1262.78    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.007;DB;DP=91;Dels=0.0;FS=3.122;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.012;QD=13.88;ReadPosRankSum=-0.813;SNPEFF_AMINO_ACID_CHANGE=S29P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_190578473_190578647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-332P22.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442080    GT:AD:DP:GQ:PL    0/1:49,42:91:99:1293,0,1494
3    190967779    rs2034771    A    G    265.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.551;DB;DP=24;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.606;QD=11.05;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339051    GT:AD:DP:GQ:PL    0/1:12,12:24:99:295,0,431
3    190980797    rs7644510    A    G    617.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTS2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340524    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:651,48,0
3    190986110    rs10804933    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445281    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    190986388    rs6794154    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445281    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
3    190995847    rs3214008    T    C    487.95    PASS    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=2.197;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.173;QD=18.07;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTS2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432514    GT:AD:DP:GQ:PL    0/1:7,20:27:99:518,0,189
3    190999872    rs6444534    G    A    222.88    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.168;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.091;QD=7.43;ReadPosRankSum=0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTS2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340524    GT:AD:DP:GQ:PL    0/1:21,9:30:99:253,0,639
3    190999917    rs6788319    C    A    172.27    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.84;DB;DP=34;Dels=0.0;FS=1.5;HRun=6;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=2.331;QD=5.07;ReadPosRankSum=0.02;SNPEFF_AMINO_ACID_CHANGE=S21I;SNPEFF_CODON_CHANGE=aGt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_190999876_191000102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTS2D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340524    GT:AD:DP:GQ:PL    0/1:24,10:34:99:202,0,694
3    190999990    rs6444535    C    T    197.31    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.282;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=8.97;ReadPosRankSum=2.115;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_3_190999876_191000102;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTS2D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432514    GT:AD:DP:GQ:PL    0/1:15,7:22:99:227,0,504
3    191047532    rs9847278    A    G    71.34    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.159;QD=7.93;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:5,4:9:99:101,0,171
3    191074873    rs188384    C    G    570.84    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=39;Dels=0.0;FS=7.257;HRun=0;HaplotypeScore=0.9867;MQ=59.41;MQ0=0;MQRankSum=-0.625;QD=14.64;ReadPosRankSum=0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:18,21:39:99:601,0,517
3    191075012    rs1520203    G    T    135.22    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.872;QD=9.01;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:8,7:15:99:165,0,293
3    191075656    rs13434281    G    A    452.99    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.851;QD=15.62;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:15,14:29:99:483,0,480
3    191075902    rs11542549    C    T    1118.31    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=81;Dels=0.0;FS=0.878;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.054;QD=13.81;ReadPosRankSum=0.685;SNPEFF_AMINO_ACID_CHANGE=R76;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_191075787_191075913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1148,0,1219
3    191087551    rs697905    G    A    696.83    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.005;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.294;QD=18.83;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:15,22:37:99:727,0,507
3    191087986    rs73185224    T    C    305    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=23.46;ReadPosRankSum=-1.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:4,9:13:99:335,0,126
3    191093434    rs293806    A    G    144.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.47;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,177
3    191097928    rs34031057    G    GTT    590.59    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=51;FS=1.664;HRun=15;HaplotypeScore=312.8163;IndelType=I;MQ=56.0;MQ0=0;MQRankSum=0.298;QD=11.58;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:23,17:51:99:630,0,261
3    191098539    rs1474188    C    G    581.41    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.77;DB;DP=37;Dels=0.0;FS=3.051;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.963;QD=15.71;ReadPosRankSum=-0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    0/1:15,22:37:99:611,0,454
3    191107192    rs436393    A    G    932.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392455    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:965,81,0
3    191178814    rs56022581    C    T    35.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.9;ReadPosRankSum=-0.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518817    GT:AD:DP:GQ:PL    0/1:4,2:6:65.40:65,0,144
3    191178925    rs539897    G    A    753.99    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=4.587;DB;DP=51;Dels=0.0;FS=16.159;HRun=0;HaplotypeScore=3.4228;MQ=56.28;MQ0=0;MQRankSum=0.722;QD=14.78;ReadPosRankSum=0.6;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518817    GT:AD:DP:GQ:PL    0/1:20,31:51:99:784,0,582
3    191179129    .    A    C    167.16    FSFilter60    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.673;DP=73;Dels=0.0;FS=125.467;HRun=2;HaplotypeScore=2.8384;MQ=54.03;MQ0=0;MQRankSum=-3.325;QD=2.29;ReadPosRankSum=-0.713;SNPEFF_AMINO_ACID_CHANGE=T60P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_191178952_191179245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518817    GT:AD:DP:GQ:PL    0/1:42,31:73:99:197,0,1438
3    191179193    rs293833    A    G    1170.94    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.74;DB;DP=83;Dels=0.0;FS=7.182;HRun=0;HaplotypeScore=1.4679;MQ=58.03;MQ0=0;MQRankSum=1.5;QD=14.11;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=Q81R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_191178952_191179245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518817    GT:AD:DP:GQ:PL    0/1:38,45:83:99:1201,0,958
3    191179303    rs176823    C    T    700.17    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=37;Dels=0.0;FS=1.953;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.27;QD=18.92;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518817    GT:AD:DP:GQ:PL    0/1:13,24:37:99:730,0,399
3    191693622    rs5014294    C    T    83.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC026320.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401201    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
3    191693786    rs5014297    A    G    311.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.756;DB;DP=34;Dels=0.0;FS=2.222;HRun=0;HaplotypeScore=1.8305;MQ=52.65;MQ0=0;MQRankSum=-1.675;QD=9.15;ReadPosRankSum=-1.927;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC026320.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401201    GT:AD:DP:GQ:PL    0/1:17,17:34:99:341,0,513
3    191693878    rs2669961    A    G    1352.05    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.566;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.0;MQ0=0;MQRankSum=-1.532;QD=15.36;ReadPosRankSum=-0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC026320.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401201    GT:AD:DP:GQ:PL    0/1:36,52:88:99:1382,0,1152
3    191693913    rs2669960    C    A    1216.79    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=3.607;DB;DP=86;Dels=0.0;FS=3.063;HRun=1;HaplotypeScore=1.7338;MQ=57.54;MQ0=0;MQRankSum=0.264;QD=14.15;ReadPosRankSum=0.329;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC026320.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401201    GT:AD:DP:GQ:PL    0/1:36,49:86:99:1247,0,1126
3    191693966    rs2173614    C    T    626.78    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.373;DB;DP=41;Dels=0.0;FS=1.842;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.824;QD=15.29;ReadPosRankSum=-0.771;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC026320.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401201    GT:AD:DP:GQ:PL    0/1:19,22:41:99:657,0,617
3    191888123    rs2046917    C    G    141.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.8;MQ0=0;MQRankSum=-0.968;QD=8.32;ReadPosRankSum=-1.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418610    GT:AD:DP:GQ:PL    0/1:9,6:17:99:171,0,279
3    192444899    rs13060864    C    A    648.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264730    GT:AD:DP:GQ:PL    1/1:1,20:21:54.17:681,54,0
3    192635348    rs9819230    C    G    44.64    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2993;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=4.46;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MB21D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392452    GT:AD:DP:GQ:PL    0/1:7,3:10:74.63:75,0,232
3    192874285    rs1979354    G    A    774.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.61;MQ0=0;QD=35.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-143P4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414895    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:808,60,0
3    192874700    rs1979355    A    G    2273.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.15;MQ0=0;QD=33.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-143P4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414895    GT:AD:DP:GQ:PL    1/1:0,67:68:99:2306,181,0
3    192874747    rs4234625    C    T    1560.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=35.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-143P4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414895    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1593,123,0
3    192881321    rs6778421    A    C    165.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-143P4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414895    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
3    192997432    rs4481103    C    T    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRASLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416012    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
3    193007560    rs12152269    G    A    235.06    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=23.51;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:3,7:10:79.85:265,0,80
3    193008043    rs2886980    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
3    193016895    rs1878716    T    C    208.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.582;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.949;QD=8.69;ReadPosRankSum=1.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:16,8:24:99:238,0,454
3    193023255    rs10937578    C    T    34.75    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.109;QD=2.9;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:9,3:12:64.74:65,0,326
3    193031926    rs2280268    C    T    1370.79    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=87;Dels=0.0;FS=0.854;HRun=1;HaplotypeScore=0.8667;MQ=59.52;MQ0=0;MQRankSum=-1.323;QD=15.76;ReadPosRankSum=-0.614;SNPEFF_AMINO_ACID_CHANGE=G739S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_193031822_193031982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:36,51:87:99:1401,0,947
3    193036794    rs6788770    G    C    1533.71    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=4.922;DB;DP=120;Dels=0.0;FS=4.874;HRun=1;HaplotypeScore=0.8941;MQ=59.81;MQ0=0;MQRankSum=0.776;QD=12.78;ReadPosRankSum=0.855;SNPEFF_AMINO_ACID_CHANGE=V673;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_193036780_193036897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:64,56:120:99:1564,0,1853
3    193042539    rs7647391    T    C    4540.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4540,334,0
3    193042776    rs11926955    T    C    1256.11    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.289;DB;DP=98;Dels=0.0;FS=1.52;HRun=2;HaplotypeScore=1.873;MQ=56.22;MQ0=0;MQRankSum=-1.405;QD=12.82;ReadPosRankSum=0.719;SNPEFF_AMINO_ACID_CHANGE=S517;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_193042653_193042803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:51,47:98:99:1286,0,1750
3    193042964    rs11715170    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
3    193044923    rs1387700    T    C    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,108
3    193062906    rs6444706    G    A    932.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:965,69,0
3    193063038    rs6774889    C    G    200.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
3    193068800    rs1038719    G    A    194.66    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.299;DB;DP=17;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.165;QD=11.45;ReadPosRankSum=-1.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:9,8:17:99:225,0,322
3    193069125    rs55658952    G    C    153.35    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.5;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=8.07;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:13,6:19:99:183,0,491
3    193071888    rs138813681    CA    C    335.10    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=3.296;DB;DP=30;FS=0.0;HRun=10;HaplotypeScore=95.6775;IndelType=D;MQ=59.59;MQ0=0;MQRankSum=-0.394;QD=11.17;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:11,18:30:99:374,0,214
3    193072258    rs7633194    G    T    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
3    193080344    rs12636830    C    T    1596.50    PASS    AB=0.445;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.75;DB;DP=110;Dels=0.0;FS=3.75;HRun=0;HaplotypeScore=2.7217;MQ=59.37;MQ0=0;MQRankSum=0.667;QD=14.51;ReadPosRankSum=0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446087    GT:AD:DP:GQ:PL    0/1:49,61:110:99:1626,0,1584
3    193080414    rs6797429    C    G    1266.93    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=100;Dels=0.0;FS=4.996;HRun=0;HaplotypeScore=0.9999;MQ=59.31;MQ0=0;MQRankSum=-0.427;QD=12.67;ReadPosRankSum=0.351;SNPEFF_AMINO_ACID_CHANGE=E133Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_193080356_193080426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:56,44:100:99:1297,0,1826
3    193080580    rs113015221    T    C    81.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=0.731;QD=16.28;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:113,9,0
3    193080592    .    T    C    76.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=0.731;QD=15.39;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:109,9,0
3    193081122    rs12637558    G    T    911.46    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=57;Dels=0.0;FS=7.558;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.854;QD=15.99;ReadPosRankSum=-0.295;SNPEFF_AMINO_ACID_CHANGE=S118Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_193081025_193081171;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446087    GT:AD:DP:GQ:PL    0/1:28,29:57:99:941,0,769
3    193081206    rs2367605    G    A    605.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.117;DB;DP=35;Dels=0.0;FS=4.353;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.683;QD=17.31;ReadPosRankSum=-1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:15,20:35:99:636,0,486
3    193081646    rs4362670    A    G    73.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=14.7;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:2,3:5:61.39:103,0,61
3    193081748    rs4234630    G    A    364.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=21.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:0,17:17:36.04:398,36,0
3    193081750    rs923497    A    G    133.23    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=8.33;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:5,11:16:99:163,0,168
3    193081830    rs923496    A    G    2181.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.98;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2215,168,0
3    193081864    rs923495    G    A    863.44    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.488;DB;DP=94;Dels=0.0;FS=1.949;HRun=0;HaplotypeScore=1.8136;MQ=59.31;MQ0=0;MQRankSum=1.455;QD=9.19;ReadPosRankSum=-1.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:57,36:94:99:893,0,1905
3    193081866    rs4386441    T    A    1850.14    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.206;DB;DP=97;Dels=0.0;FS=1.942;HRun=0;HaplotypeScore=1.8136;MQ=59.33;MQ0=0;MQRankSum=-1.638;QD=19.07;ReadPosRankSum=0.783;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:37,60:97:99:1880,0,993
3    193082138    rs923494    T    C    373.03    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.897;QD=14.35;ReadPosRankSum=-0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:14,12:26:99:403,0,449
3    193096529    rs4687419    C    T    1570.69    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=6.261;DB;DP=101;Dels=0.0;FS=1.275;HRun=0;HaplotypeScore=2.9261;MQ=59.17;MQ0=0;MQRankSum=0.957;QD=15.55;ReadPosRankSum=-0.089;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_3_193096452_193096632;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342358    GT:AD:DP:GQ:PL    0/1:47,54:101:99:1601,0,1252
3    193128900    rs61401139    G    A    693.34    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=54;Dels=0.0;FS=1.537;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.086;QD=12.84;ReadPosRankSum=-1.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342695    GT:AD:DP:GQ:PL    0/1:32,22:54:99:723,0,1108
3    193153562    rs1996735    T    C    407.17    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.918;DB;DP=30;Dels=0.0;FS=2.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=13.57;ReadPosRankSum=-0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490925    GT:AD:DP:GQ:PL    0/1:16,14:30:99:437,0,489
3    193180531    rs11716827    C    G    158.60    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.515;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=4.96;ReadPosRankSum=0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295548    GT:AD:DP:GQ:PL    0/1:23,9:32:99:189,0,760
3    193272417    rs9883845    A    G    345.13    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.687;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=42.66;MQ0=0;MQRankSum=0.179;QD=11.13;ReadPosRankSum=0.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295548    GT:AD:DP:GQ:PL    0/1:17,14:31:99:375,0,496
3    193272442    rs34308872    CGTGTGT    C    1148.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=425.9325;IndelType=D;MQ=36.07;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295548    GT:AD:DP:GQ:PL    1/1:14,13:36:69.22:1190,69,0
3    193272486    .    TGAG    T    993.12    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DP=55;FS=1.338;HRun=0;HaplotypeScore=541.1025;IndelType=D;MQ=44.63;MQ0=0;MQRankSum=-1.698;QD=18.06;ReadPosRankSum=-0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295548    GT:AD:DP:GQ:PL    0/1:33,22:55:99:1032,0,1859
3    193296935    rs10804955    A    T    130.13    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=17;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.955;QD=7.65;ReadPosRankSum=0.955;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP13A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489140    GT:AD:DP:GQ:PL    0/1:11,6:17:99:160,0,388
3    193332420    .    C    CTGTG    1111.15    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.139;DP=32;FS=0.0;HRun=0;HaplotypeScore=124.3864;IndelType=I;MQ=55.89;MQ0=0;MQRankSum=-1.559;QD=34.72;ReadPosRankSum=-1.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:20,11:32:99:1150,0,682
3    193334846    rs7646539    A    G    76.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=9.56;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:4,4:8:99:107,0,132
3    193334991    rs7624750    G    A    1058.28    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=67;Dels=0.0;FS=0.946;HRun=1;HaplotypeScore=2.9707;MQ=59.72;MQ0=0;MQRankSum=0.095;QD=15.8;ReadPosRankSum=0.775;SNPEFF_AMINO_ACID_CHANGE=S158N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_193334967_193335074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361510    GT:AD:DP:GQ:PL    0/1:30,37:67:99:1088,0,835
3    193336639    rs3772393    T    C    423.24    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=1.326;DB;DP=47;Dels=0.0;FS=4.876;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.072;QD=9.01;ReadPosRankSum=-0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:30,17:47:99:453,0,903
3    193343761    rs6791301    C    G    235.04    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.395;QD=13.83;ReadPosRankSum=-0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:9,8:17:99:265,0,323
3    193353072    rs3736198    G    A    33.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.83;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:5,2:7:63.81:64,0,152
3    193355074    rs166850    T    C    1706.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=59.56;MQ0=0;QD=32.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1739,138,0
3    193355102    rs10451941    T    C    842.83    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.474;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.5;MQ0=0;MQRankSum=-0.214;QD=18.32;ReadPosRankSum=0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:18,28:46:99:873,0,552
3    193361617    rs1016226    C    T    52.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=7.55;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497189    GT:AD:DP:GQ:PL    0/1:4,3:7:82.87:83,0,151
3    193363695    rs34222475    G    A    223.93    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=18.66;ReadPosRankSum=1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475899    GT:AD:DP:GQ:PL    0/1:5,7:12:99:254,0,166
3    193365974    rs9831900    T    G    377.34    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=24;Dels=0.0;FS=9.432;HRun=0;HaplotypeScore=1.841;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=15.72;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475899    GT:AD:DP:GQ:PL    0/1:10,14:24:99:407,0,354
3    193374964    rs9851685    T    C    1135.13    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=73;Dels=0.0;FS=0.901;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.017;QD=15.55;ReadPosRankSum=0.195;SNPEFF_AMINO_ACID_CHANGE=A703;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_193374869_193375021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392438    GT:AD:DP:GQ:PL    0/1:32,41:73:99:1165,0,973
3    193383943    rs10937594    T    C    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
3    193384203    rs10937595    T    A    198.92    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.717;DB;DP=18;Dels=0.0;FS=2.058;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=11.05;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:11,7:18:99:229,0,375
3    193385275    rs13070791    C    T    48.62    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=6.95;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:3,4:7:78.62:79,0,96
3    193385276    rs13070610    A    G    47.66    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=6.81;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:3,4:7:77.65:78,0,101
3    193386239    rs12494482    C    T    1509.23    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.538;DB;DP=118;Dels=0.0;FS=0.69;HRun=4;HaplotypeScore=0.734;MQ=59.45;MQ0=0;MQRankSum=-0.256;QD=12.79;ReadPosRankSum=0.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    0/1:60,58:118:99:1539,0,2014
3    193386538    rs414237    C    T    502.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;QD=26.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361150    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:535,42,0
3    193677469    rs74803995    C    T    358.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5605;MQ=60.0;MQ0=0;MQRankSum=-0.872;QD=13.77;ReadPosRankSum=1.333;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-699L21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397645    GT:AD:DP:GQ:PL    0/1:13,13:26:99:388,0,443
3    193721250    rs10804421    G    A    115.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.143;QD=9.66;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-407B7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458224    GT:AD:DP:GQ:PL    0/1:7,5:12:99:146,0,188
3    194023689    rs11928683    T    C    715.04    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.033;DB;DP=61;Dels=0.0;FS=2.177;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.407;QD=11.72;ReadPosRankSum=-1.101;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-513G11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397644    GT:AD:DP:GQ:PL    0/1:31,30:61:99:745,0,971
3    194061906    rs4974538    T    C    798.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=Q509R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194060494_194063434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323830    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:831,63,0
3    194063300    rs62288099    T    C    1413.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=58.76;MQ0=0;QD=25.24;SNPEFF_AMINO_ACID_CHANGE=P44;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194060494_194063434;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323830    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1446,120,0
3    194080336    rs4974533    G    A    175    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.46;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=P479;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:6,7:13:99:205,0,181
3    194080648    rs9682540    G    A    323.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.415;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8642;MQ=59.31;MQ0=0;MQRankSum=0.171;QD=11.97;ReadPosRankSum=-1.342;SNPEFF_AMINO_ACID_CHANGE=N375;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:15,12:27:99:353,0,431
3    194080696    rs9682541    G    A    370.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.53;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=15.43;ReadPosRankSum=-0.144;SNPEFF_AMINO_ACID_CHANGE=N359;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:12,12:24:99:400,0,386
3    194080916    rs13070515    G    A    679.85    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.075;QD=13.6;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=P286L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:22,28:50:99:710,0,610
3    194080983    rs13060627    C    T    802.84    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.522;DB;DP=46;Dels=0.0;FS=1.178;HRun=0;HaplotypeScore=0.734;MQ=59.5;MQ0=0;MQRankSum=0.64;QD=17.45;ReadPosRankSum=0.485;SNPEFF_AMINO_ACID_CHANGE=V264I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:21,25:46:99:833,0,674
3    194081089    rs11713861    C    T    1165.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.789;DB;DP=88;Dels=0.0;FS=0.836;HRun=0;HaplotypeScore=1.6828;MQ=59.53;MQ0=0;MQRankSum=-0.921;QD=13.25;ReadPosRankSum=-0.183;SNPEFF_AMINO_ACID_CHANGE=L228;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:44,44:88:99:1196,0,1392
3    194081179    rs11715737    G    A    1175.37    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.785;DB;DP=99;Dels=0.0;FS=14.367;HRun=0;HaplotypeScore=0.734;MQ=59.39;MQ0=0;MQRankSum=-0.588;QD=11.87;ReadPosRankSum=0.267;SNPEFF_AMINO_ACID_CHANGE=N198;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:58,41:99:99:1205,0,1819
3    194081392    rs923936    G    A    903.28    PASS    AB=0.302;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.762;DB;DP=43;Dels=0.0;FS=6.358;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.272;QD=21.01;ReadPosRankSum=1.59;SNPEFF_AMINO_ACID_CHANGE=L127;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:13,30:43:99:933,0,383
3    194081635    rs923935    T    C    136.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.023;DB;DP=20;Dels=0.0;FS=4.534;HRun=1;HaplotypeScore=2.9787;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=6.8;ReadPosRankSum=-0.95;SNPEFF_AMINO_ACID_CHANGE=A46;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194075976_194081775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347624    GT:AD:DP:GQ:PL    0/1:12,8:20:99:166,0,358
3    194118874    rs1223989    T    C    596.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=27.12;SNPEFF_AMINO_ACID_CHANGE=L46;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194115550_194119013;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323007    GT:AD:DP:GQ:PL    1/1:0,22:22:48.15:630,48,0
3    194309210    rs3732473    G    A    173.20    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=15.75;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419280    GT:AD:DP:GQ:PL    0/1:5,6:11:99:203,0,134
3    194313632    rs7373172    G    A    541.02    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=4.603;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.264;QD=17.45;ReadPosRankSum=-0.994;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419280    GT:AD:DP:GQ:PL    0/1:12,19:31:99:571,0,350
3    194313832    rs1773184    T    C    2088.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467284    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2121,171,0
3    194319329    rs9854693    C    T    32.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=16.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
3    194319358    rs9839787    G    A    121.60    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.98;MQ0=0;MQRankSum=-1.495;QD=17.37;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:2,5:7:56.83:152,0,57
3    194319408    rs9839920    G    A    119.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.88;MQ0=0;MQRankSum=-2.637;QD=9.97;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:6,6:12:99:150,0,207
3    194319417    rs9867013    T    G    105.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=50.88;MQ0=0;MQRankSum=-2.359;QD=8.81;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:6,6:12:99:136,0,207
3    194319468    rs9854887    C    T    270.97    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.824;DB;DP=31;Dels=0.0;FS=1.859;HRun=0;HaplotypeScore=0.8667;MQ=57.42;MQ0=0;MQRankSum=-0.782;QD=8.74;ReadPosRankSum=-0.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:21,10:31:99:301,0,667
3    194319490    rs1706017    C    T    681.24    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=37;Dels=0.0;FS=1.618;HRun=1;HaplotypeScore=0.0;MQ=56.81;MQ0=0;MQRankSum=1.004;QD=18.41;ReadPosRankSum=0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:12,25:37:99:711,0,296
3    194319529    rs9843931    G    C    349.56    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=0.562;DB;DP=47;Dels=0.0;FS=4.491;HRun=2;HaplotypeScore=2.5149;MQ=56.99;MQ0=0;MQRankSum=-0.773;QD=7.44;ReadPosRankSum=1.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:32,15:47:99:380,0,801
3    194319545    rs9843937    G    T    378.04    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.525;DB;DP=46;Dels=0.0;FS=6.474;HRun=1;HaplotypeScore=0.6651;MQ=56.92;MQ0=0;MQRankSum=-0.705;QD=8.22;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:29,17:46:99:408,0,846
3    194319547    rs9843938    G    A    395.34    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.274;DB;DP=46;Dels=0.0;FS=8.763;HRun=0;HaplotypeScore=0.6651;MQ=56.92;MQ0=0;MQRankSum=-0.933;QD=8.59;ReadPosRankSum=-0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:29,17:46:99:425,0,800
3    194319787    rs9844306    G    A    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
3    194325006    rs732124    A    G    56.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=14.09;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:1,3:4:29.73:86,0,30
3    194331875    rs789993    A    T    79.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.83;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:2,3:5:44.14:109,0,44
3    194338423    rs12695036    C    T    72.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.59;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=R232H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194338365_194338505;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392432    GT:AD:DP:GQ:PL    0/1:5,6:11:99:102,0,157
3    194344526    rs709011    G    C    186.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.276;QD=7.76;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:16,8:24:99:216,0,590
3    194346544    rs1773191    T    A    1762.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.5;MQ0=0;QD=38.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1796,132,0
3    194346553    rs1773190    T    C    1767.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1800,135,0
3    194346803    rs1773189    A    G    622.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    1/1:0,18:18:51.12:655,51,0
3    194346822    rs1572979    G    A    100.33    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=9.12;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:7,4:11:99:130,0,232
3    194349027    rs1318216    A    G    310.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:344,27,0
3    194349178    rs1563970    C    T    216.01    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=17;Dels=0.0;FS=8.383;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.732;QD=12.71;ReadPosRankSum=0.342;SNPEFF_AMINO_ACID_CHANGE=A66;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194349112_194349238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    0/1:10,7:17:99:246,0,229
3    194354509    rs6437393    G    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.88;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:82,6,0
3    194354514    rs6437394    A    G    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273580    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:81,6,0
3    194362721    rs1060827    G    A    1828.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=59.59;MQ0=0;MQRankSum=1.155;QD=32.66;ReadPosRankSum=0.128;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460584    GT:AD:DP:GQ:PL    1/1:1,54:56:99:1862,107,0
3    194371437    rs1773205    T    A    59.32    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=7.42;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461343    GT:AD:DP:GQ:PL    0/1:5,3:8:89.32:89,0,177
3    194371496    rs1773206    G    A    123.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.256;QD=9.51;ReadPosRankSum=0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461343    GT:AD:DP:GQ:PL    0/1:8,5:13:99:154,0,293
3    194373832    rs77451984    T    C    524.32    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.546;DB;DP=49;Dels=0.0;FS=5.809;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.01;QD=10.7;ReadPosRankSum=0.616;SNPEFF_AMINO_ACID_CHANGE=K267E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194373458_194373871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265245    GT:AD:DP:GQ:PL    0/1:28,21:49:99:554,0,941
3    194373833    rs1705991    G    A    528.16    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=49;Dels=0.0;FS=5.868;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.251;QD=10.78;ReadPosRankSum=0.131;SNPEFF_AMINO_ACID_CHANGE=T266;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194373458_194373871;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265245    GT:AD:DP:GQ:PL    0/1:27,22:49:99:558,0,898
3    194379490    rs1675949    G    T    95.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=7.98;ReadPosRankSum=1.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427461    GT:AD:DP:GQ:PL    0/1:8,4:12:99:126,0,265
3    194379567    rs1675948    A    G    726.32    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.47;MQ0=0;MQRankSum=-2.377;QD=15.79;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427461    GT:AD:DP:GQ:PL    0/1:22,24:46:99:756,0,674
3    194379596    rs1705971    C    A    924.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=68;Dels=0.0;FS=3.691;HRun=1;HaplotypeScore=0.0;MQ=60.32;MQ0=0;MQRankSum=-0.182;QD=13.59;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427461    GT:AD:DP:GQ:PL    0/1:34,34:68:99:954,0,1139
3    194379646    rs11438897    T    TC    2167.81    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.467;DB;DP=136;FS=0.0;HRun=3;HaplotypeScore=445.7607;IndelType=I;MQ=60.31;MQ0=0;MQRankSum=1.541;QD=15.94;ReadPosRankSum=0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427461    GT:AD:DP:GQ:PL    0/1:73,62:136:99:2207,0,1926
3    194379905    rs66692732    TA    T    733.76    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=5.799;DB;DP=60;FS=0.0;HRun=7;HaplotypeScore=168.8461;IndelType=D;MQ=59.57;MQ0=0;MQRankSum=-0.109;QD=12.23;ReadPosRankSum=0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265245    GT:AD:DP:GQ:PL    0/1:29,31:60:99:773,0,832
3    194379959    rs1773194    T    C    387.29    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.121;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.801;QD=14.34;ReadPosRankSum=0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265245    GT:AD:DP:GQ:PL    0/1:14,13:27:99:417,0,491
3    194386136    rs1705966    C    T    146.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.27;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480853    GT:AD:DP:GQ:PL    0/1:3,5:8:98.76:176,0,99
3    194386881    rs1675944    A    G    179.32    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=13.79;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480853    GT:AD:DP:GQ:PL    0/1:6,7:13:99:209,0,212
3    194387300    rs1675943    C    T    1014.33    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=2.455;DB;DP=64;Dels=0.0;FS=3.06;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.108;QD=15.85;ReadPosRankSum=1.2;SNPEFF_AMINO_ACID_CHANGE=E76;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194387181_194387301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265245    GT:AD:DP:GQ:PL    0/1:29,35:64:99:1044,0,964
3    194390433    rs1773229    A    C    35.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480853    GT:AD:DP:GQ:PL    1/1:1,2:3:6.01:66,6,0
3    194390617    rs1773230    G    C    867.11    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=5.947;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.622;QD=13.14;ReadPosRankSum=0.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480853    GT:AD:DP:GQ:PL    0/1:34,32:66:99:897,0,964
3    194390713    rs1675926    C    A    2487.07    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DB;DP=185;Dels=0.0;FS=0.544;HRun=0;HaplotypeScore=0.9332;MQ=59.4;MQ0=0;MQRankSum=-0.312;QD=13.44;ReadPosRankSum=1.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480853    GT:AD:DP:GQ:PL    0/1:97,87:185:99:2517,0,2718
3    194390869    rs79729723    G    GA    886.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.755;DB;DP=57;FS=1.118;HRun=6;HaplotypeScore=121.1712;IndelType=I;MQ=59.47;MQ0=0;MQRankSum=0.672;QD=15.29;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265245    GT:AD:DP:GQ:PL    0/1:29,29:57:99:926,0,658
3    194408704    rs4677673    A    G    35.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.358;QD=5.87;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=S383;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_194406622_194409762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM43A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329759    GT:AD:DP:GQ:PL    0/1:2,4:6:65.23:65,0,67
3    194999996    rs7610022    T    A    531.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472860    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:564,48,0
3    195028183    rs13059843    G    A    82.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326793    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
3    195076877    rs6437374    C    G    170.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326793    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
3    195245805    rs17847362    G    A    1471.66    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.04;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.06;MQ0=0;MQRankSum=-1.212;QD=14.15;ReadPosRankSum=1.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413183    GT:AD:DP:GQ:PL    0/1:54,49:104:99:1502,0,1589
3    195295661    rs7659    C    T    266.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.76;MQ0=0;QD=33.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421243    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:300,24,0
3    195295702    rs4651    T    TGGCG    135.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=161.6778;IndelType=I;MQ=44.47;MQ0=0;MQRankSum=-0.747;QD=11.29;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421243    GT:AD:DP:GQ:PL    0/1:6,5:12:3.33:174,0,3
3    195295708    .    G    GGGGT    482.01    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=161.8663;IndelType=I;MQ=49.85;MQ0=0;QD=28.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421243    GT:AD:DP:GQ:PL    1/1:9,7:17:27.07:524,27,0
3    195300676    rs1568566    A    G    437.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=25.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343267    GT:AD:DP:GQ:PL    1/1:0,17:17:39.10:470,39,0
3    195305883    rs2280520    G    A    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343267    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
3    195306055    rs4677691    A    G    2380.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343267    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2413,178,0
3    195345828    rs148520845    A    G    95.30    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.432;MQ=29.29;MQ0=36;QD=0.38;SNPEFF_AMINO_ACID_CHANGE=R101G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195345499_195346092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,249:250:14.96:128,15,0
3    195345829    rs147830733    G    A    66.16    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.432;MQ=29.31;MQ0=36;QD=0.26;SNPEFF_AMINO_ACID_CHANGE=R101K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195345499_195346092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,250:250:11.97:99,12,0
3    195345953    rs145174488    C    T    4160.25    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.702;DB;DP=250;DS;Dels=0.0;FS=1.016;HRun=0;HaplotypeScore=0.9997;MQ=26.95;MQ0=38;MQRankSum=3.824;QD=16.64;ReadPosRankSum=3.461;SNPEFF_AMINO_ACID_CHANGE=S142;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195345499_195346092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:49,200:250:66.07:4160,66,0
3    195346255    .    T    C    277.07    MQFilter40    AC=2;AF=1.00;AN=2;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=19.86;MQ0=0;QD=12.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,22:22:33.04:310,33,0
3    195346282    .    C    T    359.68    MQFilter40    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DP=103;Dels=0.0;FS=1.594;HRun=0;HaplotypeScore=2.4875;MQ=15.39;MQ0=56;MQRankSum=-1.647;QD=3.49;ReadPosRankSum=2.916;SNPEFF_AMINO_ACID_CHANGE=A195V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195346264_195346906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:46,57:103:99:390,0,336
3    195346308    .    G    A    33.78    MQFilter40;QDFilter2    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.045;DP=165;Dels=0.0;FS=10.577;HRun=0;HaplotypeScore=0.5784;MQ=14.79;MQ0=96;MQRankSum=-2.563;QD=0.2;ReadPosRankSum=-0.397;SNPEFF_AMINO_ACID_CHANGE=G204S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195346264_195346906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:105,59:165:63.77:64,0,1049
3    195346331    rs142792605    C    G    652.53    MQFilter40    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.275;DB;DP=197;Dels=0.0;FS=14.323;HRun=0;HaplotypeScore=0.0;MQ=14.75;MQ0=117;MQRankSum=3.155;QD=3.31;ReadPosRankSum=1.915;SNPEFF_AMINO_ACID_CHANGE=P211;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195346264_195346906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:125,72:197:99:683,0,621
3    195346352    .    C    T    543.93    MQFilter40    AB=0.376;AC=1;AF=0.50;AN=2;BaseQRankSum=3.752;DP=210;Dels=0.0;FS=3.646;HRun=0;HaplotypeScore=0.0;MQ=15.01;MQ0=136;MQRankSum=-1.214;QD=2.59;ReadPosRankSum=-0.859;SNPEFF_AMINO_ACID_CHANGE=D218;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195346264_195346906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:79,131:210:99:574,0,927
3    195346477    rs7631117    C    T    1251.18    MQFilter40    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=125;Dels=0.0;FS=11.439;HRun=0;HaplotypeScore=2.0641;MQ=37.47;MQ0=31;MQRankSum=0.203;QD=10.01;ReadPosRankSum=-0.765;SNPEFF_AMINO_ACID_CHANGE=T260M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195346264_195346906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:67,58:125:99:1281,0,1272
3    195346906    rs62286967    C    T    594.14    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DB;DP=135;Dels=0.0;FS=10.654;HRun=0;HaplotypeScore=3.3571;MQ=54.39;MQ0=1;MQRankSum=0.295;QD=4.4;ReadPosRankSum=0.008;SNPEFF_AMINO_ACID_CHANGE=T403M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195346264_195346906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:107,28:135:99:624,0,3264
3    195346914    rs62286968    G    A    552.55    PASS    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=2.249;DB;DP=130;Dels=0.0;FS=5.362;HRun=0;HaplotypeScore=4.1262;MQ=54.91;MQ0=1;MQRankSum=0.95;QD=4.25;ReadPosRankSum=-1.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:101,29:130:99:583,0,3012
3    195347059    rs2410778    C    T    2643.96    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.859;DB;DP=185;Dels=0.0;FS=1.913;HRun=0;HaplotypeScore=5.5535;MQ=59.04;MQ0=1;MQRankSum=-0.454;QD=14.29;ReadPosRankSum=0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:89,96:185:99:2674,0,2428
3    195347127    rs3988246    G    A    3334.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.29;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:1,97:98:99:3334,256,0
3    195384844    rs2688454    T    G    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
3    195390637    .    A    C    54.75    MQFilter40    AC=2;AF=1.00;AN=2;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.51;MQ0=14;QD=2.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:5,14:19:9.01:87,9,0
3    195392763    rs4927675    G    C    33.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.62;MQ0=0;QD=16.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
3    195392877    rs77365966    C    T    253.81    MQFilter40    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.152;DB;DP=45;Dels=0.0;FS=4.821;HRun=1;HaplotypeScore=0.0;MQ=23.5;MQ0=13;MQRankSum=0.34;QD=5.64;ReadPosRankSum=-0.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:24,21:45:99:284,0,335
3    195392879    rs75882267    C    T    250.81    MQFilter40    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.02;DB;DP=51;Dels=0.0;FS=3.873;HRun=0;HaplotypeScore=0.0;MQ=22.08;MQ0=19;MQRankSum=0.264;QD=4.92;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:26,24:51:99:281,0,356
3    195395156    rs78507511    T    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.92;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
3    195395168    rs76436926    T    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.92;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
3    195395200    rs76038654    C    G    211.06    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.05;MQ0=0;MQRankSum=0.751;QD=23.45;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:1,8:9:13.58:241,0,14
3    195395203    rs79813842    A    G    197.87    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.05;MQ0=0;MQRankSum=0.751;QD=21.99;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:1,8:9:13.58:228,0,14
3    195395289    rs79370883    A    T    255.55    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.892;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.55;MQ0=1;MQRankSum=0.306;QD=7.3;ReadPosRankSum=1.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:23,12:35:99:286,0,616
3    195395314    rs79206144    G    A    242.72    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=4.534;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=38.62;MQ0=3;MQRankSum=-0.961;QD=5.52;ReadPosRankSum=-1.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:29,15:44:99:273,0,607
3    195395328    rs62287989    T    C    171.48    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.191;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.85;MQ0=3;MQRankSum=-1.699;QD=3.43;ReadPosRankSum=-2.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:32,18:50:99:201,0,793
3    195395334    rs75539242    A    T    159.84    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=2.548;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.23;MQ0=3;MQRankSum=-2.368;QD=2.91;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:38,17:55:99:190,0,980
3    195395347    rs78747381    G    A    267.99    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=3.507;DB;DP=74;Dels=0.0;FS=1.46;HRun=0;HaplotypeScore=0.0;MQ=43.61;MQ0=3;MQRankSum=-1.878;QD=3.62;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:50,23:74:99:298,0,1159
3    195395354    rs80181010    A    G    216.74    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.363;DB;DP=74;Dels=0.0;FS=5.207;HRun=0;HaplotypeScore=0.0;MQ=43.43;MQ0=3;MQRankSum=-2.968;QD=2.93;ReadPosRankSum=-0.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:51,22:74:99:247,0,1351
3    195395379    rs73216381    T    G    882.72    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.008;DB;DP=94;Dels=0.0;FS=2.111;HRun=1;HaplotypeScore=1.6553;MQ=46.97;MQ0=2;MQRankSum=-1.021;QD=9.39;ReadPosRankSum=-2.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:52,42:94:99:913,0,1516
3    195395533    rs9847770    C    T    1409.19    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=5.585;DB;DP=120;Dels=0.0;FS=1.676;HRun=0;HaplotypeScore=0.8321;MQ=44.35;MQ0=0;MQRankSum=3.667;QD=11.74;ReadPosRankSum=-0.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:69,51:120:99:1439,0,1412
3    195395549    rs58717446    C    CAT    4002.87    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.168;DB;DP=93;FS=1.194;HRun=0;HaplotypeScore=412.4225;IndelType=I;MQ=44.33;MQ0=0;MQRankSum=2.877;QD=40.43;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:19,76:93:99:4003,0,542
3    195395624    rs74539433    A    G    63.82    MQFilter40    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.709;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9494;MQ=37.81;MQ0=2;MQRankSum=-2.798;QD=2.77;ReadPosRankSum=-0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:14,9:23:93.81:94,0,450
3    195395631    .    A    T    46.15    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.608;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9494;MQ=37.39;MQ0=2;MQRankSum=-3.723;QD=2.1;ReadPosRankSum=-1.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:11,11:22:76.14:76,0,394
3    195395663    rs78122231    C    T    41.63    MQFilter40    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=34.1;MQ0=2;MQRankSum=-2.927;QD=2.78;ReadPosRankSum=2.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:8,7:15:71.62:72,0,254
3    195395726    rs13073726    T    A    51.70    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.24;MQ0=0;MQRankSum=0.727;QD=12.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:1,3:4:15.65:82,0,16
3    195397908    rs148270389    T    A    1555.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.5;MQ0=9;QD=22.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:7,62:69:99:1589,153,0
3    195398250    rs80193871    C    A    268.94    MQFilter40    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=27.97;MQ0=6;MQRankSum=0.249;QD=4.34;ReadPosRankSum=-0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:39,23:62:99:299,0,981
3    195398271    rs142433257    A    G    85.93    MQFilter40    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.78;MQ0=6;MQRankSum=0.44;QD=2.05;ReadPosRankSum=1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:29,13:42:99:116,0,782
3    195410426    rs6789460    T    C    190.32    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.23;MQ0=0;MQRankSum=-2.49;QD=10.02;ReadPosRankSum=1.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:10,9:19:99:220,0,320
3    195410491    rs6797742    A    G    414.10    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.412;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.95;MQ0=0;MQRankSum=-3.792;QD=10.35;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:22,18:40:99:444,0,803
3    195410520    rs6805893    G    A    1640.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.51;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1673,135,0
3    195410627    rs6583272    A    G    114.18    QDFilter2    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.107;DB;DP=122;Dels=0.0;FS=11.8;HRun=1;HaplotypeScore=1.7552;MQ=54.05;MQ0=9;MQRankSum=-5.859;QD=0.94;ReadPosRankSum=-0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:96,26:122:99:144,0,2997
3    195410794    rs6583276    T    C    159.07    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.544;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.01;MQ0=0;MQRankSum=-2.847;QD=3.98;ReadPosRankSum=0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:29,11:40:99:189,0,973
3    195410820    rs6583277    C    T    218.25    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=4.331;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=53.48;MQ0=0;MQRankSum=-3.064;QD=7.04;ReadPosRankSum=0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:21,10:31:99:248,0,611
3    195410876    rs7642155    A    C    81.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=49.88;MQ0=0;MQRankSum=-2.219;QD=9.09;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:5,4:9:99:112,0,175
3    195412525    .    G    A    60.59    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.75;MQ0=1;MQRankSum=-1.769;QD=5.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:7,5:12:90.58:91,0,188
3    195412621    rs113400760    C    T    154.88    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.319;DB;DP=72;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=40.28;MQ0=7;MQRankSum=-4.155;QD=2.15;ReadPosRankSum=0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:51,21:72:99:185,0,1667
3    195412876    rs11185503    T    C    665.23    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.518;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.47;MQ0=6;MQRankSum=2.175;QD=17.98;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:11,26:37:24.50:695,0,25
3    195412928    rs9840959    G    A    144.75    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.69;MQ0=0;MQRankSum=2.8;QD=10.34;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:9,5:14:99:175,0,153
3    195426100    rs9869197    A    G    143.75    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.5;MQ0=0;MQRankSum=2.148;QD=13.07;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:6,5:11:60.22:174,0,60
3    195426148    rs4997079    T    C    116.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.85;MQ0=0;QD=10.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,11:11:14.99:149,15,0
3    195426149    rs4997080    G    A    116.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.85;MQ0=0;QD=10.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,11:11:14.99:149,15,0
3    195426190    rs9869353    A    G    75.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.52;MQ0=0;MQRankSum=0.876;QD=8.38;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:5,4:9:99:105,0,144
3    195428587    rs867388    A    G    567.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:600,45,0
3    195434886    rs2098733    G    T    219.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:252,18,0
3    195434956    rs2098732    T    C    968.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.17;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1001,78,0
3    195435053    rs2688502    G    A    870.67    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DB;DP=104;Dels=0.0;FS=0.792;HRun=0;HaplotypeScore=0.9789;MQ=57.75;MQ0=0;MQRankSum=0.783;QD=8.37;ReadPosRankSum=-0.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:65,39:104:99:901,0,1746
3    195435168    rs2688501    T    G    445.20    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=67;Dels=0.0;FS=5.681;HRun=0;HaplotypeScore=1.9998;MQ=58.96;MQ0=0;MQRankSum=0.243;QD=6.64;ReadPosRankSum=-0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:48,19:67:99:475,0,1622
3    195435186    rs2688500    G    T    524.09    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.67;DB;DP=70;Dels=0.0;FS=1.017;HRun=0;HaplotypeScore=1.9929;MQ=59.34;MQ0=0;MQRankSum=1.073;QD=7.49;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:50,20:70:99:554,0,1638
3    195435220    rs6790200    T    G    1963.22    PASS    AB=0.241;AC=1;AF=0.50;AN=2;BaseQRankSum=2.328;DB;DP=79;Dels=0.0;FS=2.26;HRun=0;HaplotypeScore=0.9469;MQ=59.71;MQ0=0;MQRankSum=-0.535;QD=24.85;ReadPosRankSum=-1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:19,60:79:99:1993,0,547
3    195435434    rs1051827    A    G    772.37    PASS    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=0.613;DB;DP=155;Dels=0.0;FS=7.137;HRun=0;HaplotypeScore=3.6037;MQ=59.88;MQ0=0;MQRankSum=-0.241;QD=4.98;ReadPosRankSum=-1.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:119,36:155:99:802,0,3960
3    195447886    rs7627924    G    C    118.96    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-1.495;QD=16.99;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=C3S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195447753_195447954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    0/1:2,5:7:63.71:149,0,64
3    195452005    rs145612981    C    T    260.84    MQFilter40;QDFilter2    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=1.23;DB;DP=207;Dels=0.0;FS=3.165;HRun=0;HaplotypeScore=2.6469;MQ=24.19;MQ0=35;MQRankSum=-0.34;QD=1.26;ReadPosRankSum=-7.188;SNPEFF_AMINO_ACID_CHANGE=S142;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195451098_195453443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445522    GT:AD:DP:GQ:PL    0/1:148,58:207:99:291,0,2425
3    195452106    .    C    T    112.22    MQFilter40;QDFilter2    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=1.299;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=9.59;MQ0=88;MQRankSum=1.343;QD=0.86;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=A176V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195451098_195453443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445522    GT:AD:DP:GQ:PL    0/1:103,27:130:24.27:142,0,24
3    195452619    .    C    T    531.02    MQFilter40    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.867;DP=250;DS;Dels=0.0;FS=0.91;HRun=0;HaplotypeScore=0.6651;MQ=14.31;MQ0=134;MQRankSum=1.248;QD=2.12;ReadPosRankSum=-0.044;SNPEFF_AMINO_ACID_CHANGE=A211V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    0/1:169,80:250:99:561,0,1076
3    195452645    .    G    A    178.64    MQFilter40;QDFilter2    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=4.852;DP=244;DS;Dels=0.0;FS=4.101;HRun=0;HaplotypeScore=1.6647;MQ=14.76;MQ0=129;MQRankSum=1.476;QD=0.73;ReadPosRankSum=-0.934;SNPEFF_AMINO_ACID_CHANGE=G220S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    0/1:192,51:244:99:209,0,1416
3    195452668    .    C    G    426.78    MQFilter40    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.331;DP=200;DS;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=3.6956;MQ=17.11;MQ0=84;MQRankSum=-2.713;QD=2.13;ReadPosRankSum=1.006;SNPEFF_AMINO_ACID_CHANGE=P227;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    0/1:112,88:200:99:457,0,1322
3    195452689    rs141077164    C    T    364.55    MQFilter40    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=4.119;DB;DP=161;DS;Dels=0.0;FS=13.955;HRun=0;HaplotypeScore=0.0;MQ=12.12;MQ0=112;MQRankSum=2.343;QD=2.26;ReadPosRankSum=0.824;SNPEFF_AMINO_ACID_CHANGE=D234;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    0/1:70,91:161:99:395,0,216
3    195452770    rs2550231    G    A    1068.90    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.042;DB;DP=157;Dels=0.0;FS=16.729;HRun=1;HaplotypeScore=1.8519;MQ=15.75;MQ0=103;MQRankSum=4.079;QD=6.81;ReadPosRankSum=1.627;SNPEFF_AMINO_ACID_CHANGE=T261;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    1/1:85,72:157:31.23:1102,31,0
3    195452799    rs2550232    C    T    1613.90    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.305;DB;DP=130;Dels=0.0;FS=7.686;HRun=0;HaplotypeScore=1.4105;MQ=26.98;MQ0=63;MQRankSum=3.959;QD=12.41;ReadPosRankSum=-0.049;SNPEFF_AMINO_ACID_CHANGE=T271I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    1/1:52,78:130:93.99:1647,94,0
3    195452951    rs2688542    G    C    2914.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9532;MQ=55.75;MQ0=0;QD=33.12;SNPEFF_AMINO_ACID_CHANGE=D322H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2948,223,0
3    195453064    rs2550233    T    G    1725.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.95;MQ0=1;QD=29.75;SNPEFF_AMINO_ACID_CHANGE=L359;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1758,138,0
3    195453243    rs3828408    C    T    73.22    QDFilter2    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=1.15;DB;DP=49;Dels=0.0;FS=1.621;HRun=0;HaplotypeScore=0.734;MQ=52.8;MQ0=1;MQRankSum=-4.168;QD=1.49;ReadPosRankSum=0.553;SNPEFF_AMINO_ACID_CHANGE=P419L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195452544_195453443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    0/1:40,9:49:99:103,0,1131
3    195453288    rs3828405    A    C    432.48    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=3.365;DB;DP=52;Dels=0.0;FS=12.196;HRun=3;HaplotypeScore=2.6626;MQ=55.9;MQ0=1;MQRankSum=0.293;QD=8.32;ReadPosRankSum=-3.264;SNPEFF_AMINO_ACID_CHANGE=D416A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195453250_195453443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381954    GT:AD:DP:GQ:PL    0/1:33,19:52:99:462,0,986
3    195453562    rs2550234    A    C    209.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.16;MQ0=0;QD=29.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480350    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:242,21,0
3    195456708    rs2550296    G    A    362.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480350    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
3    195460236    rs712011    G    A    84.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498018    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
3    195466662    rs3844569    T    G    53.78    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=6.72;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320736    GT:AD:DP:GQ:PL    0/1:5,3:8:83.77:84,0,165
3    195475799    rs3205933    C    T    264.89    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=25;Dels=0.0;FS=3.834;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.215;QD=10.6;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=Q1049;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195475773_195475935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349607    GT:AD:DP:GQ:PL    0/1:13,12:25:99:295,0,320
3    195477713    rs2291654    G    A    416.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=35.55;MQ0=4;QD=24.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:2,15:17:39.07:450,39,0
3    195477715    rs2291653    C    A    378.36    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=35.55;MQ0=4;QD=22.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:2,15:17:36.08:411,36,0
3    195477786    rs6808605    C    T    457.19    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.45;MQ0=0;MQRankSum=0.284;QD=15.77;ReadPosRankSum=0.196;SNPEFF_AMINO_ACID_CHANGE=G1046E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195477760_195477983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    0/1:14,15:29:99:487,0,406
3    195477791    rs2291652    G    A    329.87    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.336;DB;DP=28;Dels=0.0;FS=1.507;HRun=1;HaplotypeScore=0.0;MQ=52.95;MQ0=0;MQRankSum=0.0;QD=11.78;ReadPosRankSum=0.276;SNPEFF_AMINO_ACID_CHANGE=I1044;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195477760_195477983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    0/1:15,13:28:99:360,0,484
3    195478012    rs2291651    G    C    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
3    195479226    rs6792437    G    A    273.97    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=12.45;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    0/1:12,10:22:99:304,0,317
3    195479256    rs2258447    T    C    989.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_AMINO_ACID_CHANGE=E1690;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195479244_195479317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,32:32:75.25:1022,75,0
3    195481444    rs2641722    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
3    195484244    rs2550270    G    A    877.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,29:29:66.22:911,66,0
3    195487737    rs2246771    A    G    420.45    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.327;DB;DP=36;Dels=0.0;FS=3.893;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.697;QD=11.68;ReadPosRankSum=1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    0/1:19,17:36:99:450,0,564
3    195489669    rs2550263    C    T    58.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=11.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486425    GT:AD:DP:GQ:PL    0/1:2,3:5:62.34:89,0,62
3    195492027    rs11926236    T    C    362.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486425    GT:AD:DP:GQ:PL    1/1:0,14:14:33.06:396,33,0
3    195495916    rs2550240    G    C    273.06    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=31;Dels=0.0;FS=3.325;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=8.81;ReadPosRankSum=-1.034;SNPEFF_AMINO_ACID_CHANGE=N1228K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195495893_195496023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    0/1:19,12:31:99:303,0,473
3    195496129    rs2688492    C    T    281.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
3    195497174    rs2259102    C    G    1020.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=M1163I;SNPEFF_CODON_CHANGE=atG/atC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195497087_195497242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,34:34:81.22:1054,81,0
3    195498859    rs2641779    T    A    127.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
3    195501149    rs2259292    C    T    1075.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=G1050D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195501043_195501176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,33:33:84.22:1108,84,0
3    195501258    rs2259331    T    C    468.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:502,42,0
3    195505072    rs2550252    C    T    209.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
3    195505091    rs2688512    G    A    377.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:410,30,0
3    195505417    rs2259419    G    A    256.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:289,21,0
3    195505664    rs2688513    G    A    958.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.51;MQ0=0;QD=23.37;SNPEFF_AMINO_ACID_CHANGE=P4263S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,41:41:78.22:991,78,0
3    195505788    rs2550253    G    C    1349.41    HaplotypeScoreFilter13;MQFilter40    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=5.491;DB;DP=183;Dels=0.0;FS=19.394;HRun=1;HaplotypeScore=34.1367;MQ=26.92;MQ0=35;MQRankSum=3.065;QD=7.37;ReadPosRankSum=2.786;SNPEFF_AMINO_ACID_CHANGE=H4221Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:101,79:183:99:1379,0,879
3    195505801    .    G    A    48.84    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.649;DP=210;Dels=0.0;FS=5.077;HRun=0;HaplotypeScore=23.3855;MQ=25.23;MQ0=39;MQRankSum=-2.39;QD=0.23;ReadPosRankSum=3.941;SNPEFF_AMINO_ACID_CHANGE=A4217V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:168,41:210:78.83:79,0,2577
3    195505835    rs58500707    C    T    300.11    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=1.173;DB;DP=244;DS;Dels=0.0;FS=22.562;HRun=0;HaplotypeScore=138.5653;MQ=19.58;MQ0=59;MQRankSum=0.345;QD=1.22;ReadPosRankSum=-0.205;SNPEFF_AMINO_ACID_CHANGE=A4206T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:188,54:244:99:330,0,1747
3    195505836    .    G    C    227.80    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=3.251;DP=246;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=138.5653;MQ=19.59;MQ0=59;MQRankSum=0.117;QD=0.93;ReadPosRankSum=0.953;SNPEFF_AMINO_ACID_CHANGE=H4205Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:196,48:246:99:258,0,2058
3    195505838    rs59101491    G    C    144.60    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.308;DB;DP=245;DS;Dels=0.0;FS=30.114;HRun=0;HaplotypeScore=138.8082;MQ=19.43;MQ0=59;MQRankSum=-0.43;QD=0.59;ReadPosRankSum=1.542;SNPEFF_AMINO_ACID_CHANGE=H4205D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:203,42:245:99:175,0,2000
3    195505855    .    G    T    127.82    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.167;DP=229;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=62.0474;MQ=19.24;MQ0=47;MQRankSum=1.513;QD=0.56;ReadPosRankSum=4.717;SNPEFF_AMINO_ACID_CHANGE=S4199Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:197,32:229:99:158,0,2021
3    195505907    rs138720131    T    G    74.27    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=3.808;DB;DP=84;DS;Dels=0.0;FS=8.93;HRun=1;HaplotypeScore=25.1643;MQ=18.12;MQ0=19;MQRankSum=0.833;QD=0.88;ReadPosRankSum=-1.21;SNPEFF_AMINO_ACID_CHANGE=T4182P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:62,17:84:99:104,0,450
3    195505930    .    C    G    81.95    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=18.895;MQ=13.65;MQ0=11;QD=1.78;SNPEFF_AMINO_ACID_CHANGE=G4174A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,44:45:12.01:114,12,0
3    195505944    .    C    T    161.50    MQFilter40    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=3.879;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.2452;MQ=15.59;MQ0=9;MQRankSum=1.277;QD=2.94;ReadPosRankSum=1.349;SNPEFF_AMINO_ACID_CHANGE=V4169;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:31,23:55:99:191,0,164
3    195505945    .    A    G    161.50    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=4.096;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.2873;MQ=15.93;MQ0=9;MQRankSum=2.412;QD=2.88;ReadPosRankSum=1.274;SNPEFF_AMINO_ACID_CHANGE=V4169A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:36,20:56:99:191,0,165
3    195505955    rs55789594    C    T    511.18    HaplotypeScoreFilter13;MQFilter40    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=5.145;DB;DP=62;Dels=0.0;FS=2.793;HRun=0;HaplotypeScore=17.8485;MQ=20.92;MQ0=10;MQRankSum=3.243;QD=8.24;ReadPosRankSum=0.428;SNPEFF_AMINO_ACID_CHANGE=A4166T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:28,34:62:99:541,0,129
3    195505960    rs112020305    G    C    254.11    HaplotypeScoreFilter13;MQFilter40    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.542;DB;DP=64;Dels=0.0;FS=16.417;HRun=0;HaplotypeScore=24.0623;MQ=22.89;MQ0=8;MQRankSum=2.869;QD=3.97;ReadPosRankSum=-2.559;SNPEFF_AMINO_ACID_CHANGE=T4164S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:47,17:64:99:284,0,495
3    195506037    rs78235075    G    T    1889.46    MQFilter40    AB=0.254;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.049;DB;DP=114;Dels=0.0;FS=1.433;HRun=1;HaplotypeScore=10.6627;MQ=26.54;MQ0=9;MQRankSum=4.451;QD=16.57;ReadPosRankSum=3.746;SNPEFF_AMINO_ACID_CHANGE=S4138;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:29,85:114:34.55:1919,0,35
3    195506091    rs74941663    A    C    163.37    HaplotypeScoreFilter13;MQFilter40    AB=0.036;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=13.6432;MQ=16.83;MQ0=10;MQRankSum=-1.595;QD=3.14;ReadPosRankSum=0.208;SNPEFF_AMINO_ACID_CHANGE=S4120;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:1,27:52:15.97:193,0,16
3    195506099    .    T    C    140.94    MQFilter40    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.544;DP=50;Dels=0.0;FS=6.455;HRun=0;HaplotypeScore=9.8331;MQ=16.57;MQ0=12;MQRankSum=1.576;QD=2.82;ReadPosRankSum=-1.64;SNPEFF_AMINO_ACID_CHANGE=T4118A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:26,24:50:62.63:171,0,63
3    195506118    .    C    G    80.99    MQFilter40    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.467;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.7222;MQ=16.41;MQ0=8;MQRankSum=1.833;QD=2.7;ReadPosRankSum=1.621;SNPEFF_AMINO_ACID_CHANGE=T4111;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:13,17:30:18.40:111,0,18
3    195506227    rs75610733    C    G    319.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.09;MQ0=2;QD=18.79;SNPEFF_AMINO_ACID_CHANGE=R4075T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,17:17:33.03:352,33,0
3    195506245    rs150394536    C    A    274.55    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.079;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.18;MQ0=6;MQRankSum=1.35;QD=12.48;ReadPosRankSum=2.143;SNPEFF_AMINO_ACID_CHANGE=S4069I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:4,18:22:11.37:307,11,0
3    195506267    .    C    T    260.31    MQFilter40    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=0.355;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=20.95;MQ0=6;MQRankSum=0.829;QD=10.85;ReadPosRankSum=1.54;SNPEFF_AMINO_ACID_CHANGE=A4062T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:5,19:24:11.32:290,0,11
3    195506271    rs77023345    A    T    264.88    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9468;MQ=20.95;MQ0=6;MQRankSum=1.54;QD=11.04;ReadPosRankSum=1.327;SNPEFF_AMINO_ACID_CHANGE=G4060;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:6,18:24:11.32:295,0,11
3    195506292    .    A    G    42.17    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.961;DP=28;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=2.8135;MQ=22.28;MQ0=6;MQRankSum=0.493;QD=1.51;ReadPosRankSum=-0.564;SNPEFF_AMINO_ACID_CHANGE=N4053;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:21,7:28:72.17:72,0,289
3    195506294    .    T    C    42.17    MQFilter40;QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.696;DP=28;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=1.8401;MQ=22.28;MQ0=6;MQRankSum=-0.444;QD=1.51;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=N4053D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:20,8:28:72.17:72,0,289
3    195506354    rs144160315    C    G    133.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=20.85;MQ0=2;QD=8.33;SNPEFF_AMINO_ACID_CHANGE=V4033L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,16:16:15.03:166,15,0
3    195506364    .    G    C    120.80    HaplotypeScoreFilter13;MQFilter40    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.96;DP=23;Dels=0.0;FS=19.792;HRun=1;HaplotypeScore=17.157;MQ=24.38;MQ0=3;MQRankSum=2.444;QD=5.25;ReadPosRankSum=-2.706;SNPEFF_AMINO_ACID_CHANGE=H4029Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:18,5:23:99:151,0,180
3    195506378    rs111605191    C    A    118.15    HaplotypeScoreFilter13;MQFilter40    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=25;Dels=0.0;FS=15.563;HRun=0;HaplotypeScore=18.0007;MQ=22.91;MQ0=5;MQRankSum=2.639;QD=4.73;ReadPosRankSum=-0.602;SNPEFF_AMINO_ACID_CHANGE=A4025S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:19,5:25:99:148,0,163
3    195506398    rs74573747    G    T    163.49    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=21;Dels=0.0;FS=19.243;HRun=0;HaplotypeScore=4.302;MQ=22.35;MQ0=5;MQRankSum=3.034;QD=7.79;ReadPosRankSum=0.323;SNPEFF_AMINO_ACID_CHANGE=P4018H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:12,8:21:55.93:193,0,56
3    195506410    rs79037473    G    A    206.80    MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=23.06;MQ0=5;MQRankSum=2.163;QD=10.88;ReadPosRankSum=2.927;SNPEFF_AMINO_ACID_CHANGE=A4014V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:7,12:19:2.56:236,0,3
3    195506482    rs113936020    G    T    114.73    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=22;Dels=0.0;FS=13.222;HRun=1;HaplotypeScore=2.8801;MQ=19.02;MQ0=4;MQRankSum=1.96;QD=5.21;ReadPosRankSum=-1.558;SNPEFF_AMINO_ACID_CHANGE=T3990N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:14,8:22:99:145,0,103
3    195506499    .    G    A    314.17    MQFilter40    AC=2;AF=1.00;AN=2;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=19.56;MQ0=4;QD=13.66;SNPEFF_AMINO_ACID_CHANGE=P3984;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:1,22:23:36.02:347,36,0
3    195506514    rs187734372    T    G    106.75    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.853;DB;DP=25;Dels=0.0;FS=18.195;HRun=1;HaplotypeScore=5.8358;MQ=19.14;MQ0=5;MQRankSum=0.872;QD=4.27;ReadPosRankSum=1.902;SNPEFF_AMINO_ACID_CHANGE=T3979;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:16,9:25:99:137,0,170
3    195506530    .    C    A    69.49    HaplotypeScoreFilter13;MQFilter40    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DP=26;Dels=0.04;FS=0.0;HRun=2;HaplotypeScore=13.5811;MQ=20.13;MQ0=5;MQRankSum=-1.739;QD=2.57;ReadPosRankSum=-1.739;SNPEFF_AMINO_ACID_CHANGE=R3974L;SNPEFF_CODON_CHANGE=cGt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:1,12:26:11.67:99,0,12
3    195506549    .    A    G    48.10    MQFilter40;QDFilter2    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DP=39;Dels=0.0;FS=3.282;HRun=2;HaplotypeScore=10.0435;MQ=18.84;MQ0=6;MQRankSum=-2.184;QD=1.23;ReadPosRankSum=2.564;SNPEFF_AMINO_ACID_CHANGE=S3968P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:20,19:39:78.09:78,0,282
3    195506569    .    A    G    50.22    MQFilter40;QDFilter2    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.277;DP=34;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=1.9468;MQ=17.67;MQ0=5;MQRankSum=-0.905;QD=1.48;ReadPosRankSum=1.602;SNPEFF_AMINO_ACID_CHANGE=V3961A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:16,18:34:80.21:80,0,150
3    195506603    .    T    C    44.65    MQFilter40;QDFilter2    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.4834;MQ=16.47;MQ0=4;MQRankSum=-0.598;QD=1.44;ReadPosRankSum=1.102;SNPEFF_AMINO_ACID_CHANGE=T3950A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:21,10:31:74.64:75,0,86
3    195506606    .    C    G    44.65    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.094;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=19.5399;MQ=16.47;MQ0=4;MQRankSum=-0.598;QD=1.44;ReadPosRankSum=1.039;SNPEFF_AMINO_ACID_CHANGE=D3949H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:20,10:31:74.64:75,0,80
3    195506692    rs142466346    C    G    52.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=21.37;MQ0=1;QD=8.78;SNPEFF_AMINO_ACID_CHANGE=R3920P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:2,4:6:8.99:85,9,0
3    195506704    .    T    C    31.82    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.75;MQ0=0;QD=7.95;SNPEFF_AMINO_ACID_CHANGE=D3916G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,3:4:6.01:63,6,0
3    195506712    .    A    T    31.82    MQFilter40    AC=2;AF=1.00;AN=2;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.78;MQ0=1;QD=4.55;SNPEFF_AMINO_ACID_CHANGE=A3913;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:1,6:7:6.01:63,6,0
3    195506746    rs192522651    G    A    429.51    HaplotypeScoreFilter13;MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.656;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.2249;MQ=35.54;MQ0=3;MQRankSum=2.683;QD=15.34;ReadPosRankSum=-1.789;SNPEFF_AMINO_ACID_CHANGE=A3902V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:12,16:28:47.29:460,0,47
3    195506753    rs9882363    G    C    751.97    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=16.6431;MQ=36.35;MQ0=3;QD=22.79;SNPEFF_AMINO_ACID_CHANGE=R3900G;SNPEFF_CODON_CHANGE=Cgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,30:33:63.15:785,63,0
3    195506775    rs79609066    G    A    1194.99    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DB;DP=58;Dels=0.0;FS=2.652;HRun=0;HaplotypeScore=9.9038;MQ=38.12;MQ0=3;MQRankSum=2.973;QD=20.6;ReadPosRankSum=-1.362;SNPEFF_AMINO_ACID_CHANGE=T3892;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:11,47:58:2.05:1224,2,0
3    195506914    rs186560307    G    A    752.91    HaplotypeScoreFilter13;MQFilter40    AB=0.216;AC=1;AF=0.50;AN=2;BaseQRankSum=1.274;DB;DP=51;Dels=0.02;FS=4.613;HRun=2;HaplotypeScore=14.8582;MQ=33.96;MQ0=4;MQRankSum=1.163;QD=14.48;ReadPosRankSum=0.969;SNPEFF_AMINO_ACID_CHANGE=P3846L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:11,40:51:88.53:783,0,89
3    195506917    rs150128295    A    C    813.39    HaplotypeScoreFilter13;MQFilter40    AB=0.17;AC=1;AF=0.50;AN=2;BaseQRankSum=0.719;DB;DP=49;Dels=0.0;FS=2.222;HRun=0;HaplotypeScore=13.0701;MQ=31.23;MQ0=5;MQRankSum=0.387;QD=16.6;ReadPosRankSum=-0.424;SNPEFF_AMINO_ACID_CHANGE=I3845S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:8,39:49:52.04:843,0,52
3    195506940    .    G    C    280.89    HaplotypeScoreFilter13;MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DP=54;Dels=0.0;FS=6.204;HRun=1;HaplotypeScore=15.4382;MQ=21.52;MQ0=18;MQRankSum=1.872;QD=5.2;ReadPosRankSum=-0.507;SNPEFF_AMINO_ACID_CHANGE=H3837Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:36,18:54:99:311,0,275
3    195506946    .    T    G    52.36    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.679;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=20.9298;MQ=20.51;MQ0=18;MQRankSum=-0.507;QD=0.99;ReadPosRankSum=-1.483;SNPEFF_AMINO_ACID_CHANGE=T3835;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:36,17:53:82.35:82,0,485
3    195506955    .    T    C    52.38    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.607;DP=58;Dels=0.0;FS=2.399;HRun=1;HaplotypeScore=29.2498;MQ=19.68;MQ0=19;MQRankSum=-0.371;QD=0.9;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=S3832;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:39,19:58:82.37:82,0,464
3    195506982    .    G    C    253.73    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.027;DP=96;Dels=0.0;FS=16.426;HRun=0;HaplotypeScore=34.5972;MQ=18.27;MQ0=40;MQRankSum=2.009;QD=2.64;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=T3823;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:76,20:96:99:284,0,477
3    195506983    .    G    A    224.24    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=1.282;DP=99;Dels=0.0;FS=18.087;HRun=0;HaplotypeScore=37.094;MQ=18.13;MQ0=41;MQRankSum=2.032;QD=2.27;ReadPosRankSum=-0.497;SNPEFF_AMINO_ACID_CHANGE=T3823I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:82,17:99:99:254,0,488
3    195506990    .    C    G    41.34    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.47;DP=116;Dels=0.0;FS=34.066;HRun=0;HaplotypeScore=40.0599;MQ=18.34;MQ0=47;MQRankSum=-0.114;QD=0.36;ReadPosRankSum=-2.631;SNPEFF_AMINO_ACID_CHANGE=D3821H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:93,23:116:71.33:71,0,874
3    195507062    .    C    T    1846.30    HaplotypeScoreFilter13;MQFilter40    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=3.957;DP=234;Dels=0.0;FS=23.031;HRun=1;HaplotypeScore=26.2912;MQ=36.47;MQ0=38;MQRankSum=1.075;QD=7.89;ReadPosRankSum=0.598;SNPEFF_AMINO_ACID_CHANGE=D3797N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:162,71:234:99:1876,0,2742
3    195507107    .    C    T    2833.85    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=3.628;DP=237;Dels=0.0;FS=34.908;HRun=0;HaplotypeScore=7.5502;MQ=45.08;MQ0=7;MQRankSum=2.974;QD=11.96;ReadPosRankSum=1.71;SNPEFF_AMINO_ACID_CHANGE=A3782T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:103,125:237:99:2864,0,2358
3    195507166    rs79358488    A    G    5626.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.448;DB;DP=222;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.5921;MQ=45.16;MQ0=12;MQRankSum=2.169;QD=25.34;ReadPosRankSum=2.319;SNPEFF_AMINO_ACID_CHANGE=L3762P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:5,210:222:99:5626,410,0
3    195507226    .    A    G    5110.83    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=1.922;DP=243;Dels=0.0;FS=5.548;HRun=1;HaplotypeScore=29.7283;MQ=42.96;MQ0=21;MQRankSum=4.757;QD=21.03;ReadPosRankSum=0.326;SNPEFF_AMINO_ACID_CHANGE=V3742A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:22,221:243:99:5111,214,0
3    195507228    .    G    C    85.61    HaplotypeScoreFilter13;QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DP=246;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=42.5361;MQ=43.31;MQ0=21;MQRankSum=1.683;QD=0.35;ReadPosRankSum=2.139;SNPEFF_AMINO_ACID_CHANGE=H3741Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:203,43:246:99:116,0,4083
3    195507242    rs112808291    C    A    652.97    HaplotypeScoreFilter13    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.293;DB;DP=247;DS;Dels=0.0;FS=3.834;HRun=0;HaplotypeScore=50.5592;MQ=42.86;MQ0=17;MQRankSum=2.687;QD=2.64;ReadPosRankSum=1.469;SNPEFF_AMINO_ACID_CHANGE=A3737S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:190,57:247:99:683,0,4012
3    195507251    .    G    T    46.96    HaplotypeScoreFilter13;QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.26;DP=243;DS;Dels=0.0;FS=2.228;HRun=0;HaplotypeScore=35.2772;MQ=42.42;MQ0=17;MQRankSum=-2.914;QD=0.19;ReadPosRankSum=-2.503;SNPEFF_AMINO_ACID_CHANGE=P3734T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:211,30:243:76.95:77,0,5235
3    195507262    .    T    G    286.58    QDFilter2    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=2.197;DP=250;DS;Dels=0.0;FS=3.958;HRun=1;HaplotypeScore=4.7951;MQ=43.55;MQ0=11;MQRankSum=-3.138;QD=1.15;ReadPosRankSum=-2.42;SNPEFF_AMINO_ACID_CHANGE=H3730P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:210,40:250:99:317,0,5200
3    195507323    .    T    C    118.63    QDFilter2;SnpCluster    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=1.234;DP=194;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.5957;MQ=41.22;MQ0=3;MQRankSum=-1.794;QD=0.61;ReadPosRankSum=-0.719;SNPEFF_AMINO_ACID_CHANGE=T3710A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:148,45:194:99:149,0,3756
3    195507324    .    G    C    83.41    QDFilter2;SnpCluster    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DP=193;DS;Dels=0.0;FS=2.995;HRun=0;HaplotypeScore=9.5957;MQ=41.1;MQ0=3;MQRankSum=-1.6;QD=0.43;ReadPosRankSum=-1.127;SNPEFF_AMINO_ACID_CHANGE=H3709Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:150,43:193:99:113,0,3855
3    195507332    .    A    T    271.78    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.989;DP=167;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.2001;MQ=40.25;MQ0=2;MQRankSum=-3.878;QD=1.63;ReadPosRankSum=-1.448;SNPEFF_AMINO_ACID_CHANGE=S3707T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:129,38:167:99:302,0,3546
3    195507349    .    A    C    168.51    MQFilter40;QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=0.149;DP=134;DS;Dels=0.0;FS=2.573;HRun=0;HaplotypeScore=5.6601;MQ=39.43;MQ0=2;MQRankSum=-1.409;QD=1.26;ReadPosRankSum=-2.867;SNPEFF_AMINO_ACID_CHANGE=I3701S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:108,24:134:99:199,0,2609
3    195507365    rs75737861    G    A    1593.19    MQFilter40    AB=0.299;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.978;DB;DP=117;DS;Dels=0.0;FS=17.65;HRun=0;HaplotypeScore=12.1582;MQ=35.24;MQ0=16;MQRankSum=2.462;QD=13.62;ReadPosRankSum=2.906;SNPEFF_AMINO_ACID_CHANGE=P3696S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:35,82:117:99:1623,0,211
3    195507372    rs147904363    C    G    1367.29    HaplotypeScoreFilter13;MQFilter40    AB=0.327;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.518;DB;DP=110;DS;Dels=0.0;FS=1.636;HRun=0;HaplotypeScore=25.5576;MQ=31.36;MQ0=25;MQRankSum=1.259;QD=12.43;ReadPosRankSum=2.192;SNPEFF_AMINO_ACID_CHANGE=Q3693H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:36,74:110:76.45:1397,0,76
3    195507379    .    G    C    87.69    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.885;AC=1;AF=0.50;AN=2;BaseQRankSum=3.297;DP=104;Dels=0.0;FS=18.677;HRun=0;HaplotypeScore=24.291;MQ=27.89;MQ0=30;MQRankSum=-0.052;QD=0.84;ReadPosRankSum=1.049;SNPEFF_AMINO_ACID_CHANGE=T3691R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:92,12:104:99:118,0,1276
3    195507385    .    G    A    521.84    HaplotypeScoreFilter13;MQFilter40    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.171;DP=100;Dels=0.0;FS=18.048;HRun=0;HaplotypeScore=16.2782;MQ=26.16;MQ0=34;MQRankSum=-0.283;QD=5.22;ReadPosRankSum=0.912;SNPEFF_AMINO_ACID_CHANGE=A3689V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:68,32:100:99:552,0,693
3    195507398    .    C    T    237.93    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=3.178;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=16.2334;MQ=18.87;MQ0=41;MQRankSum=-0.188;QD=2.73;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=D3685N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:57,30:87:99:268,0,282
3    195507399    .    C    G    268.95    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.456;DP=85;Dels=0.0;FS=4.722;HRun=1;HaplotypeScore=16.2334;MQ=18.47;MQ0=41;MQRankSum=-1.395;QD=3.16;ReadPosRankSum=-0.222;SNPEFF_AMINO_ACID_CHANGE=T3684;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:34,33:85:99:299,0,156
3    195507406    .    G    A    87.05    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.699;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=20.2208;MQ=15.97;MQ0=49;MQRankSum=-0.216;QD=0.94;ReadPosRankSum=-0.877;SNPEFF_AMINO_ACID_CHANGE=P3682L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:74,19:93:99:117,0,435
3    195507412    .    C    G    280.76    HaplotypeScoreFilter13;MQFilter40    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=2.958;DP=99;Dels=0.0;FS=3.637;HRun=3;HaplotypeScore=22.709;MQ=15.94;MQ0=52;MQRankSum=-1.32;QD=2.84;ReadPosRankSum=-2.526;SNPEFF_AMINO_ACID_CHANGE=R3680P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:64,35:99:99:311,0,358
3    195507422    .    C    G    197.53    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DP=119;Dels=0.0;FS=28.691;HRun=0;HaplotypeScore=21.8669;MQ=15.48;MQ0=65;MQRankSum=1.382;QD=1.66;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=D3677H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:99,20:119:99:228,0,511
3    195507428    .    T    A    299.57    MQFilter40    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=4.807;DP=128;Dels=0.0;FS=40.629;HRun=0;HaplotypeScore=9.5484;MQ=15.68;MQ0=69;MQRankSum=3.319;QD=2.34;ReadPosRankSum=-1.129;SNPEFF_AMINO_ACID_CHANGE=T3675S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:108,20:128:99:330,0,491
3    195507434    .    C    A    354.44    MQFilter40    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DP=122;Dels=0.0;FS=40.629;HRun=0;HaplotypeScore=6.71;MQ=15.46;MQ0=69;MQRankSum=3.257;QD=2.91;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=A3673S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:102,20:122:99:384,0,536
3    195507461    .    G    A    854.09    MQFilter40    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=2.733;DP=169;Dels=0.0;FS=23.819;HRun=0;HaplotypeScore=9.9948;MQ=15.66;MQ0=96;MQRankSum=3.373;QD=5.05;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=P3664S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:112,57:169:99:884,0,287
3    195507475    .    G    C    191.60    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=0.846;DP=179;Dels=0.0;FS=10.72;HRun=0;HaplotypeScore=30.5183;MQ=16.65;MQ0=96;MQRankSum=1.27;QD=1.07;ReadPosRankSum=-0.766;SNPEFF_AMINO_ACID_CHANGE=T3659R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:157,22:179:99:222,0,1228
3    195507481    rs71187737    A    G    418.10    HaplotypeScoreFilter13;MQFilter40    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=3.503;DB;DP=198;Dels=0.0;FS=6.948;HRun=0;HaplotypeScore=44.3917;MQ=17.41;MQ0=102;MQRankSum=-0.845;QD=2.11;ReadPosRankSum=0.812;SNPEFF_AMINO_ACID_CHANGE=V3657A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:160,38:198:99:448,0,1224
3    195507491    rs150551454    C    T    1542.63    HaplotypeScoreFilter13;MQFilter40    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=4.736;DB;DP=228;Dels=0.0;FS=5.95;HRun=0;HaplotypeScore=43.4992;MQ=18.21;MQ0=101;MQRankSum=4.983;QD=6.77;ReadPosRankSum=4.604;SNPEFF_AMINO_ACID_CHANGE=A3654T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:115,100:228:99:1573,0,493
3    195507494    .    C    T    1695.76    HaplotypeScoreFilter13;MQFilter40    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=5.518;DP=236;Dels=0.0;FS=3.524;HRun=1;HaplotypeScore=24.6057;MQ=19.48;MQ0=100;MQRankSum=5.129;QD=7.19;ReadPosRankSum=4.051;SNPEFF_AMINO_ACID_CHANGE=D3653N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:124,112:236:99:1726,0,496
3    195507543    .    G    T    933    HaplotypeScoreFilter13;MQFilter40    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.698;DP=246;DS;Dels=0.0;FS=1.497;HRun=1;HaplotypeScore=15.7426;MQ=25.78;MQ0=58;MQRankSum=3.004;QD=3.79;ReadPosRankSum=-0.055;SNPEFF_AMINO_ACID_CHANGE=T3636;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:183,62:246:99:963,0,2771
3    195507591    rs399520    C    T    469.46    HaplotypeScoreFilter13;MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=6.105;DB;DP=180;DS;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=30.224;MQ=26.94;MQ0=50;MQRankSum=-4.878;QD=2.61;ReadPosRankSum=0.667;SNPEFF_AMINO_ACID_CHANGE=T3620;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:100,48:180:99:499,0,1570
3    195507673    .    A    G    95.31    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=0.651;DP=175;Dels=0.0;FS=29.37;HRun=0;HaplotypeScore=37.8565;MQ=14.64;MQ0=107;MQRankSum=-1.685;QD=0.54;ReadPosRankSum=3.357;SNPEFF_AMINO_ACID_CHANGE=V3593A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:145,30:175:99:125,0,1048
3    195507683    rs71187742    C    T    180.98    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=1.544;DB;DP=169;Dels=0.0;FS=50.247;HRun=0;HaplotypeScore=39.8038;MQ=14.77;MQ0=99;MQRankSum=-1.687;QD=1.07;ReadPosRankSum=1.373;SNPEFF_AMINO_ACID_CHANGE=A3590T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:138,25:169:99:211,0,817
3    195507694    .    A    G    446.34    FSFilter60;HaplotypeScoreFilter13;MQFilter40    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DP=163;Dels=0.0;FS=87.664;HRun=1;HaplotypeScore=22.1604;MQ=14.38;MQ0=89;MQRankSum=-2.486;QD=2.74;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=L3586P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:109,52:163:99:476,0,562
3    195507702    .    G    C    282.43    MQFilter40;QDFilter2    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.961;DP=162;Dels=0.0;FS=47.025;HRun=0;HaplotypeScore=10.3815;MQ=14.46;MQ0=85;MQRankSum=-1.214;QD=1.74;ReadPosRankSum=0.642;SNPEFF_AMINO_ACID_CHANGE=T3583;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:118,40:162:99:312,0,679
3    195507717    .    G    T    580.03    MQFilter40    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DP=145;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.8258;MQ=19.7;MQ0=60;MQRankSum=2.793;QD=4.0;ReadPosRankSum=-3.438;SNPEFF_AMINO_ACID_CHANGE=S3578;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:111,34:145:99:610,0,758
3    195507731    .    G    A    204.61    MQFilter40;QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DP=139;Dels=0.0;FS=33.065;HRun=3;HaplotypeScore=3.6113;MQ=23.94;MQ0=49;MQRankSum=-1.586;QD=1.47;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=L3574F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:116,23:139:99:235,0,1407
3    195507756    rs140571210    C    G    31.68    MQFilter40;QDFilter2    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.148;DB;DP=148;Dels=0.0;FS=8.936;HRun=0;HaplotypeScore=5.4006;MQ=27.27;MQ0=36;MQRankSum=-2.974;QD=0.21;ReadPosRankSum=-1.734;SNPEFF_AMINO_ACID_CHANGE=Q3565H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:104,44:148:61.67:62,0,1832
3    195507827    .    G    A    1215    HaplotypeScoreFilter13;MQFilter40    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=3.997;DP=238;Dels=0.0;FS=6.923;HRun=3;HaplotypeScore=29.5394;MQ=30.41;MQ0=51;MQRankSum=-3.436;QD=5.11;ReadPosRankSum=5.225;SNPEFF_AMINO_ACID_CHANGE=L3542F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:114,121:238:99:1245,0,1867
3    195507846    .    C    G    2250.52    MQFilter40    AB=0.298;AC=1;AF=0.50;AN=2;BaseQRankSum=8.0;DP=242;DS;Dels=0.0;FS=4.042;HRun=2;HaplotypeScore=12.8371;MQ=32.04;MQ0=39;MQRankSum=-4.328;QD=9.3;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=T3535;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:72,170:242:99:2281,0,1376
3    195507858    rs74957513    G    T    2844.96    HaplotypeScoreFilter13;MQFilter40    AB=0.227;AC=1;AF=0.50;AN=2;BaseQRankSum=3.713;DB;DP=238;DS;Dels=0.0;FS=6.539;HRun=0;HaplotypeScore=13.2559;MQ=33.51;MQ0=37;MQRankSum=-4.756;QD=11.95;ReadPosRankSum=-4.415;SNPEFF_AMINO_ACID_CHANGE=T3531;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:54,184:238:99:2875,0,1161
3    195507915    rs71635073    T    C    272.19    QDFilter2    AB=0.799;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.169;DB;DP=179;DS;Dels=0.0;FS=14.636;HRun=1;HaplotypeScore=11.0296;MQ=40.04;MQ0=9;MQRankSum=-0.957;QD=1.52;ReadPosRankSum=-3.632;SNPEFF_AMINO_ACID_CHANGE=S3512;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:143,36:179:99:302,0,3559
3    195508046    rs76458038    C    G    95.75    HaplotypeScoreFilter13;QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.004;DB;DP=114;Dels=0.0;FS=20.856;HRun=0;HaplotypeScore=15.6573;MQ=43.84;MQ0=1;MQRankSum=-3.726;QD=0.84;ReadPosRankSum=2.254;SNPEFF_AMINO_ACID_CHANGE=D3469H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:89,25:114:99:126,0,2126
3    195508101    rs76887830    A    G    927.21    HaplotypeScoreFilter13    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.538;DB;DP=151;Dels=0.0;FS=9.39;HRun=1;HaplotypeScore=44.8959;MQ=46.59;MQ0=2;MQRankSum=-3.33;QD=6.14;ReadPosRankSum=-2.76;SNPEFF_AMINO_ACID_CHANGE=S3450;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:89,62:151:99:957,0,2210
3    195508108    .    G    A    608.39    HaplotypeScoreFilter13    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DP=165;Dels=0.0;FS=2.804;HRun=1;HaplotypeScore=72.9897;MQ=46.42;MQ0=2;MQRankSum=-1.464;QD=3.69;ReadPosRankSum=1.48;SNPEFF_AMINO_ACID_CHANGE=S3448L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:123,41:165:99:638,0,3190
3    195508127    .    G    C    1763.55    HaplotypeScoreFilter13    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.277;DP=173;Dels=0.0;FS=0.643;HRun=0;HaplotypeScore=69.3425;MQ=47.2;MQ0=2;MQRankSum=8.66;QD=10.19;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=P3442A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:105,68:173:99:1794,0,2259
3    195508130    rs75675109    C    G    649.08    HaplotypeScoreFilter13    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=1.525;DB;DP=175;Dels=0.0;FS=2.713;HRun=0;HaplotypeScore=66.0477;MQ=47.41;MQ0=2;MQRankSum=-6.89;QD=3.71;ReadPosRankSum=-2.264;SNPEFF_AMINO_ACID_CHANGE=V3441L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:123,52:175:99:679,0,3334
3    195508336    .    C    T    100.41    HaplotypeScoreFilter13;QDFilter2    AB=0.9;AC=1;AF=0.50;AN=2;BaseQRankSum=1.557;DP=211;Dels=0.0;FS=4.942;HRun=0;HaplotypeScore=13.9517;MQ=47.99;MQ0=1;MQRankSum=-3.736;QD=0.48;ReadPosRankSum=-0.764;SNPEFF_AMINO_ACID_CHANGE=G3372D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:189,21:211:99:130,0,5277
3    195508402    .    G    T    204.52    HaplotypeScoreFilter13;QDFilter2    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=2.093;DP=149;Dels=0.0;FS=11.936;HRun=1;HaplotypeScore=26.8106;MQ=41.7;MQ0=0;MQRankSum=-1.215;QD=1.37;ReadPosRankSum=-4.24;SNPEFF_AMINO_ACID_CHANGE=T3350N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:132,17:149:99:235,0,3503
3    195508499    rs62282475    C    T    154.08    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=0.182;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.2802;MQ=41.12;MQ0=0;MQRankSum=1.459;QD=3.14;ReadPosRankSum=-0.73;SNPEFF_AMINO_ACID_CHANGE=A3318T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:2,40:49:18.02:187,18,0
3    195508510    .    A    G    96.31    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=3.03;DP=52;Dels=0.0;FS=20.083;HRun=1;HaplotypeScore=38.3515;MQ=37.53;MQ0=0;MQRankSum=-3.722;QD=1.85;ReadPosRankSum=1.844;SNPEFF_AMINO_ACID_CHANGE=L3314P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:24,13:52:99:126,0,693
3    195508518    .    A    G    870.62    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=30.8016;MQ=36.88;MQ0=0;QD=15.27;SNPEFF_AMINO_ACID_CHANGE=T3311;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,57:57:81.17:904,81,0
3    195508537    rs73891106    A    G    1299.53    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.834;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.5084;MQ=36.14;MQ0=4;MQRankSum=1.504;QD=17.56;ReadPosRankSum=-0.45;SNPEFF_AMINO_ACID_CHANGE=V3305A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:6,68:74:34.76:1333,35,0
3    195508661    .    A    G    267.05    MQFilter40    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.998;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.4664;MQ=17.28;MQ0=41;MQRankSum=-2.71;QD=4.05;ReadPosRankSum=-0.465;SNPEFF_AMINO_ACID_CHANGE=S3264P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:40,26:66:99:297,0,256
3    195508691    .    T    C    105.22    MQFilter40;QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7998;MQ=13.46;MQ0=43;MQRankSum=-0.177;QD=1.81;ReadPosRankSum=-3.123;SNPEFF_AMINO_ACID_CHANGE=T3254A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:48,10:58:99:135,0,140
3    195508854    .    A    G    32.89    MQFilter40;QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DP=118;Dels=0.0;FS=2.53;HRun=2;HaplotypeScore=12.2418;MQ=18.41;MQ0=51;MQRankSum=-3.536;QD=0.28;ReadPosRankSum=0.78;SNPEFF_AMINO_ACID_CHANGE=T3199;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:91,27:118:62.88:63,0,939
3    195508986    .    G    A    1732.21    HaplotypeScoreFilter13;MQFilter40    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=0.914;DP=246;Dels=0.0;FS=4.38;HRun=1;HaplotypeScore=15.3866;MQ=29.01;MQ0=52;MQRankSum=7.683;QD=7.04;ReadPosRankSum=1.165;SNPEFF_AMINO_ACID_CHANGE=V3155;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:159,87:246:99:1762,0,1417
3    195509036    .    C    G    985.25    HaplotypeScoreFilter13;MQFilter40    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DP=228;DS;Dels=0.0;FS=27.765;HRun=0;HaplotypeScore=79.3661;MQ=35.25;MQ0=26;MQRankSum=-4.104;QD=4.32;ReadPosRankSum=-1.269;SNPEFF_AMINO_ACID_CHANGE=V3139L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:151,77:228:99:1015,0,2974
3    195509045    rs75309583    C    G    1402.95    HaplotypeScoreFilter13;MQFilter40    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=5.627;DB;DP=212;DS;Dels=0.0;FS=10.066;HRun=2;HaplotypeScore=47.5703;MQ=36.06;MQ0=27;MQRankSum=-9.587;QD=6.62;ReadPosRankSum=1.934;SNPEFF_AMINO_ACID_CHANGE=A3136P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:80,129:212:99:1433,0,2028
3    195509102    .    G    C    69.91    HaplotypeScoreFilter13;QDFilter2    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.971;DP=152;DS;Dels=0.0;FS=6.674;HRun=0;HaplotypeScore=40.3445;MQ=41.38;MQ0=16;MQRankSum=-7.052;QD=0.46;ReadPosRankSum=-3.495;SNPEFF_AMINO_ACID_CHANGE=H3117D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:113,39:152:99:100,0,2732
3    195509235    rs77084193    C    A    136.16    HaplotypeScoreFilter13;QDFilter2    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=5.337;DB;DP=185;Dels=0.0;FS=2.712;HRun=0;HaplotypeScore=16.0752;MQ=42.82;MQ0=25;MQRankSum=-7.285;QD=0.74;ReadPosRankSum=2.514;SNPEFF_AMINO_ACID_CHANGE=P3072;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:119,65:185:99:166,0,2939
3    195509331    .    C    A    143.38    HaplotypeScoreFilter13;QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=6.152;DP=177;Dels=0.0;FS=10.813;HRun=0;HaplotypeScore=13.0953;MQ=46.69;MQ0=2;MQRankSum=-7.72;QD=0.81;ReadPosRankSum=-0.214;SNPEFF_AMINO_ACID_CHANGE=P3040;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:132,43:177:99:173,0,3480
3    195509388    .    G    A    538.58    HaplotypeScoreFilter13    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=2.747;DP=241;DS;Dels=0.0;FS=17.535;HRun=0;HaplotypeScore=14.2901;MQ=44.49;MQ0=11;MQRankSum=-4.757;QD=2.23;ReadPosRankSum=1.897;SNPEFF_AMINO_ACID_CHANGE=H3021;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:185,55:241:99:569,0,4412
3    195509402    rs74772699    T    C    376.79    QDFilter2    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.399;DB;DP=202;DS;Dels=0.0;FS=11.223;HRun=0;HaplotypeScore=10.3131;MQ=45.81;MQ0=12;MQRankSum=-4.913;QD=1.87;ReadPosRankSum=-1.179;SNPEFF_AMINO_ACID_CHANGE=I3017V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:152,48:202:99:407,0,4387
3    195509423    .    G    A    165.84    QDFilter2    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.459;DP=182;DS;Dels=0.0;FS=11.655;HRun=2;HaplotypeScore=11.6001;MQ=46.1;MQ0=15;MQRankSum=-1.695;QD=0.91;ReadPosRankSum=-4.029;SNPEFF_AMINO_ACID_CHANGE=P3010S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:157,24:182:99:196,0,4366
3    195509429    rs28542401    A    G    3896.82    PASS    AB=0.196;AC=1;AF=0.50;AN=2;BaseQRankSum=2.595;DB;DP=179;DS;Dels=0.0;FS=5.422;HRun=2;HaplotypeScore=12.4942;MQ=45.32;MQ0=16;MQRankSum=3.002;QD=21.77;ReadPosRankSum=3.972;SNPEFF_AMINO_ACID_CHANGE=S3008P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:35,144:179:99:3897,0,246
3    195509443    rs74585045    A    G    599.54    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=3.885;DB;DP=142;DS;Dels=0.0;FS=2.93;HRun=0;HaplotypeScore=1.7882;MQ=44.33;MQ0=16;MQRankSum=-7.452;QD=4.22;ReadPosRankSum=-1.688;SNPEFF_AMINO_ACID_CHANGE=I3003T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:84,58:142:99:630,0,2246
3    195509476    rs75221587    A    G    722.95    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.43;DB;DP=148;DS;Dels=0.0;FS=15.646;HRun=3;HaplotypeScore=6.1572;MQ=44.57;MQ0=10;MQRankSum=-5.2;QD=4.88;ReadPosRankSum=-1.306;SNPEFF_AMINO_ACID_CHANGE=L2992P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:90,58:148:99:753,0,2303
3    195509515    rs28438604    T    A    1425.11    MQFilter40    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=2.945;DB;DP=183;Dels=0.0;FS=1.432;HRun=0;HaplotypeScore=7.033;MQ=37.23;MQ0=16;MQRankSum=-4.078;QD=7.79;ReadPosRankSum=-2.547;SNPEFF_AMINO_ACID_CHANGE=D2979V;SNPEFF_CODON_CHANGE=gAc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:74,109:183:99:1455,0,1348
3    195509676    .    C    G    216.39    MQFilter40;QDFilter2    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.759;DP=237;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4837;MQ=36.18;MQ0=27;MQRankSum=-9.267;QD=0.91;ReadPosRankSum=2.747;SNPEFF_AMINO_ACID_CHANGE=Q2925H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:155,81:237:99:246,0,3881
3    195509689    rs59620726    G    A    413.66    MQFilter40;QDFilter2    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.115;DB;DP=236;DS;Dels=0.0;FS=4.238;HRun=0;HaplotypeScore=0.9789;MQ=35.96;MQ0=28;MQRankSum=-9.089;QD=1.75;ReadPosRankSum=0.65;SNPEFF_AMINO_ACID_CHANGE=A2921V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:154,82:236:99:444,0,4059
3    195509769    rs77947599    A    G    1032.14    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.002;DB;DP=204;Dels=0.0;FS=4.4;HRun=1;HaplotypeScore=12.4391;MQ=42.44;MQ0=24;MQRankSum=-8.971;QD=5.06;ReadPosRankSum=1.469;SNPEFF_AMINO_ACID_CHANGE=A2894;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:103,100:204:99:1062,0,2746
3    195509784    rs61099195    C    T    752.25    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.526;DB;DP=200;Dels=0.0;FS=12.354;HRun=0;HaplotypeScore=7.632;MQ=41.35;MQ0=22;MQRankSum=-6.651;QD=3.76;ReadPosRankSum=-0.883;SNPEFF_AMINO_ACID_CHANGE=V2889;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:128,71:200:99:782,0,3073
3    195509795    .    C    T    442.48    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=0.733;DP=196;Dels=0.0;FS=12.101;HRun=0;HaplotypeScore=5.4308;MQ=42.44;MQ0=16;MQRankSum=-7.022;QD=2.25;ReadPosRankSum=-1.442;SNPEFF_AMINO_ACID_CHANGE=A2886T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:136,58:196:99:472,0,3208
3    195509820    rs75372823    A    G    4810.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.515;DB;DP=221;Dels=0.0;FS=5.771;HRun=0;HaplotypeScore=5.949;MQ=42.93;MQ0=15;MQRankSum=0.832;QD=21.77;ReadPosRankSum=1.566;SNPEFF_AMINO_ACID_CHANGE=H2877;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:4,216:221:99:4810,330,0
3    195509879    .    A    G    144.22    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.416;DP=175;Dels=0.0;FS=4.778;HRun=2;HaplotypeScore=74.7748;MQ=45.12;MQ0=9;MQRankSum=-1.693;QD=0.82;ReadPosRankSum=-2.91;SNPEFF_AMINO_ACID_CHANGE=S2858P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:145,29:175:99:174,0,3451
3    195509880    .    C    T    196.62    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.751;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DP=177;Dels=0.0;FS=1.908;HRun=0;HaplotypeScore=74.7748;MQ=45.21;MQ0=9;MQRankSum=-4.78;QD=1.11;ReadPosRankSum=-0.557;SNPEFF_AMINO_ACID_CHANGE=V2857;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:133,44:177:99:227,0,3434
3    195509886    .    G    C    394.21    HaplotypeScoreFilter13;SnpCluster    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.931;DP=169;Dels=0.0;FS=0.848;HRun=0;HaplotypeScore=52.7234;MQ=44.3;MQ0=9;MQRankSum=1.456;QD=2.33;ReadPosRankSum=-2.58;SNPEFF_AMINO_ACID_CHANGE=S2855;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:143,26:169:99:424,0,3247
3    195509918    .    G    C    432.73    HaplotypeScoreFilter13    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=1.994;DP=159;Dels=0.0;FS=0.856;HRun=0;HaplotypeScore=14.9486;MQ=44.52;MQ0=9;MQRankSum=-5.465;QD=2.72;ReadPosRankSum=-0.937;SNPEFF_AMINO_ACID_CHANGE=H2845D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:120,39:159:99:463,0,3182
3    195509954    .    G    C    510.15    HaplotypeScoreFilter13;SnpCluster    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.697;DP=144;Dels=0.0;FS=3.112;HRun=0;HaplotypeScore=32.8753;MQ=45.76;MQ0=7;MQRankSum=-4.821;QD=3.54;ReadPosRankSum=2.481;SNPEFF_AMINO_ACID_CHANGE=L2833V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:112,32:144:99:540,0,3228
3    195509955    rs71635078    A    C    1319.15    HaplotypeScoreFilter13;SnpCluster    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.204;DB;DP=143;Dels=0.0;FS=7.427;HRun=0;HaplotypeScore=32.8753;MQ=45.92;MQ0=6;MQRankSum=7.076;QD=9.22;ReadPosRankSum=-2.817;SNPEFF_AMINO_ACID_CHANGE=S2832;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:79,64:143:99:1349,0,1937
3    195509964    rs71635079    A    G    3968.64    HaplotypeScoreFilter13;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=32.426;MQ=45.57;MQ0=6;MQRankSum=1.496;QD=28.15;ReadPosRankSum=1.548;SNPEFF_AMINO_ACID_CHANGE=H2829;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:1,140:141:99:3969,334,0
3    195509974    .    A    G    1535.73    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.708;DP=132;Dels=0.0;FS=28.088;HRun=1;HaplotypeScore=3.7574;MQ=46.13;MQ0=5;MQRankSum=-7.161;QD=11.63;ReadPosRankSum=-1.025;SNPEFF_AMINO_ACID_CHANGE=F2826S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:60,72:132:99:1566,0,1764
3    195510192    .    A    C    138.22    MQFilter40;QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DP=115;DS;Dels=0.0;FS=46.709;HRun=0;HaplotypeScore=1.4725;MQ=35.22;MQ0=12;MQRankSum=1.421;QD=1.2;ReadPosRankSum=1.157;SNPEFF_AMINO_ACID_CHANGE=L2753;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:101,14:115:99:168,0,2189
3    195510194    .    G    C    159.96    MQFilter40;QDFilter2    AB=0.858;AC=1;AF=0.50;AN=2;BaseQRankSum=0.442;DP=113;DS;Dels=0.0;FS=38.755;HRun=0;HaplotypeScore=7.563;MQ=35.21;MQ0=11;MQRankSum=1.68;QD=1.42;ReadPosRankSum=0.269;SNPEFF_AMINO_ACID_CHANGE=L2753V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:97,16:113:99:190,0,2116
3    195510217    rs145853807    A    G    1260.15    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.832;DB;DP=62;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8075;MQ=27.41;MQ0=13;MQRankSum=1.728;QD=20.33;ReadPosRankSum=0.903;SNPEFF_AMINO_ACID_CHANGE=V2745A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:4,58:62:99:1293,111,0
3    195510228    .    C    G    65.18    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=48;Dels=0.0;FS=27.711;HRun=0;HaplotypeScore=16.3321;MQ=25.42;MQ0=12;MQRankSum=-3.392;QD=1.36;ReadPosRankSum=-2.075;SNPEFF_AMINO_ACID_CHANGE=E2741D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:32,15:48:95.18:95,0,661
3    195510266    .    A    C    143.04    MQFilter40    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.476;DP=53;Dels=0.0;FS=21.065;HRun=0;HaplotypeScore=0.734;MQ=23.28;MQ0=24;MQRankSum=-3.394;QD=2.7;ReadPosRankSum=-0.098;SNPEFF_AMINO_ACID_CHANGE=S2729A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:42,10:53:99:173,0,494
3    195510293    .    A    G    216.76    MQFilter40    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DP=68;Dels=0.0;FS=9.066;HRun=2;HaplotypeScore=5.9695;MQ=20.62;MQ0=34;MQRankSum=-3.21;QD=3.19;ReadPosRankSum=1.425;SNPEFF_AMINO_ACID_CHANGE=S2720P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:50,18:68:99:247,0,440
3    195510310    .    T    G    335.90    HaplotypeScoreFilter13;MQFilter40    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.959;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=28.882;MQ=19.41;MQ0=38;MQRankSum=-3.428;QD=4.1;ReadPosRankSum=-2.966;SNPEFF_AMINO_ACID_CHANGE=Y2714S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:45,37:82:99:366,0,367
3    195510341    .    A    G    429.41    HaplotypeScoreFilter13;MQFilter40    AB=0.402;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DP=97;Dels=0.0;FS=5.593;HRun=2;HaplotypeScore=24.6428;MQ=19.03;MQ0=40;MQRankSum=-4.18;QD=4.43;ReadPosRankSum=2.252;SNPEFF_AMINO_ACID_CHANGE=S2704P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:39,58:97:99:459,0,397
3    195510367    .    G    T    56.06    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.935;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DP=92;Dels=0.0;FS=2.507;HRun=0;HaplotypeScore=25.6899;MQ=17.82;MQ0=43;MQRankSum=2.211;QD=0.61;ReadPosRankSum=-1.906;SNPEFF_AMINO_ACID_CHANGE=S2695Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:86,6:92:86.05:86,0,607
3    195510389    .    A    G    276.57    HaplotypeScoreFilter13;MQFilter40    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.145;DP=79;Dels=0.0;FS=2.567;HRun=2;HaplotypeScore=15.1854;MQ=16.12;MQ0=42;MQRankSum=-0.495;QD=3.5;ReadPosRankSum=-1.202;SNPEFF_AMINO_ACID_CHANGE=S2688P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:43,35:79:91.55:307,0,92
3    195510396    .    A    C    134.17    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DP=70;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=15.1848;MQ=15.54;MQ0=40;MQRankSum=-0.375;QD=1.92;ReadPosRankSum=-0.512;SNPEFF_AMINO_ACID_CHANGE=H2685Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:47,16:70:99:164,0,107
3    195510402    .    G    T    99.57    MQFilter40;QDFilter2    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DP=65;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=10.5248;MQ=13.81;MQ0=42;MQRankSum=-2.452;QD=1.53;ReadPosRankSum=-2.063;SNPEFF_AMINO_ACID_CHANGE=T2683;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:46,19:65:99:130,0,155
3    195510438    .    C    G    55.27    MQFilter40;QDFilter2    AB=0.887;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DP=53;Dels=0.0;FS=10.0;HRun=2;HaplotypeScore=0.0;MQ=9.79;MQ0=45;MQRankSum=-0.572;QD=1.04;ReadPosRankSum=-1.067;SNPEFF_AMINO_ACID_CHANGE=T2671;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:47,6:53:51.83:85,0,52
3    195510457    .    A    G    58.29    MQFilter40;QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=1.044;DP=58;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=1.9312;MQ=9.2;MQ0=48;MQRankSum=-1.393;QD=1.01;ReadPosRankSum=1.393;SNPEFF_AMINO_ACID_CHANGE=V2665A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:46,12:58:21.40:88,0,21
3    195510515    .    C    T    107.16    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2978;MQ=9.41;MQ0=47;QD=1.73;SNPEFF_AMINO_ACID_CHANGE=A2646T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:47,14:62:14.99:140,15,0
3    195510601    .    A    G    69.59    MQFilter40    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9601;MQ=9.87;MQ0=23;MQRankSum=2.219;QD=2.17;ReadPosRankSum=1.881;SNPEFF_AMINO_ACID_CHANGE=V2617A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:28,4:32:7.69:99,0,8
3    195510622    .    G    T    66.62    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.639;DP=42;Dels=0.0;FS=6.117;HRun=0;HaplotypeScore=5.1752;MQ=22.46;MQ0=15;MQRankSum=1.248;QD=1.59;ReadPosRankSum=0.213;SNPEFF_AMINO_ACID_CHANGE=P2610H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:35,7:42:96.61:97,0,350
3    195510636    .    C    G    42.05    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.033;DP=73;Dels=0.0;FS=5.297;HRun=0;HaplotypeScore=16.6651;MQ=32.06;MQ0=11;MQRankSum=-3.497;QD=0.58;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=Q2605H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:48,16:73:72.04:72,0,1041
3    195510649    .    G    A    35    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.383;DP=98;Dels=0.0;FS=9.89;HRun=0;HaplotypeScore=19.3878;MQ=33.79;MQ0=7;MQRankSum=-0.766;QD=0.36;ReadPosRankSum=1.478;SNPEFF_AMINO_ACID_CHANGE=A2601V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:86,12:98:65:65,0,1923
3    195510655    rs76458870    T    G    745.49    HaplotypeScoreFilter13;MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=4.804;DB;DP=103;Dels=0.0;FS=45.121;HRun=1;HaplotypeScore=21.1604;MQ=35.01;MQ0=6;MQRankSum=-3.293;QD=7.24;ReadPosRankSum=-1.194;SNPEFF_AMINO_ACID_CHANGE=Y2599S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:56,47:103:99:775,0,1278
3    195510707    rs142559357    T    G    1294.05    HaplotypeScoreFilter13;MQFilter40    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=6.088;DB;DP=200;Dels=0.0;FS=14.406;HRun=1;HaplotypeScore=22.6619;MQ=35.8;MQ0=15;MQRankSum=-2.265;QD=6.47;ReadPosRankSum=-4.066;SNPEFF_AMINO_ACID_CHANGE=T2582P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:129,69:200:99:1324,0,2643
3    195510718    rs80005560    G    T    1235.18    HaplotypeScoreFilter13;MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.522;DB;DP=204;Dels=0.0;FS=6.644;HRun=0;HaplotypeScore=23.6601;MQ=36.7;MQ0=14;MQRankSum=-1.546;QD=6.03;ReadPosRankSum=-4.349;SNPEFF_AMINO_ACID_CHANGE=P2578H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:138,66:204:99:1265,0,3051
3    195510732    rs80145081    G    A    802.52    HaplotypeScoreFilter13;MQFilter40    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=1.886;DB;DP=200;Dels=0.0;FS=3.319;HRun=0;HaplotypeScore=16.8539;MQ=38.61;MQ0=11;MQRankSum=-0.576;QD=4.01;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=H2573;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:140,52:200:99:833,0,3045
3    195510745    rs2453138    G    A    1249.39    HaplotypeScoreFilter13;MQFilter40    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.207;DB;DP=194;Dels=0.0;FS=4.014;HRun=0;HaplotypeScore=43.1904;MQ=39.84;MQ0=12;MQRankSum=-0.513;QD=6.44;ReadPosRankSum=-0.807;SNPEFF_AMINO_ACID_CHANGE=A2569V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:130,64:194:99:1279,0,2941
3    195510749    rs62282480    C    A    2353.95    HaplotypeScoreFilter13    AB=0.376;AC=1;AF=0.50;AN=2;BaseQRankSum=6.918;DB;DP=199;Dels=0.0;FS=9.908;HRun=0;HaplotypeScore=44.057;MQ=40.76;MQ0=11;MQRankSum=-5.002;QD=11.83;ReadPosRankSum=-0.693;SNPEFF_AMINO_ACID_CHANGE=A2568S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:74,123:199:99:2384,0,1823
3    195510762    rs2911273    G    A    1599.22    HaplotypeScoreFilter13    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.255;DB;DP=209;Dels=0.0;FS=21.958;HRun=1;HaplotypeScore=41.3912;MQ=42.05;MQ0=9;MQRankSum=3.92;QD=7.65;ReadPosRankSum=0.324;SNPEFF_AMINO_ACID_CHANGE=V2563;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:136,73:209:99:1629,0,3030
3    195510767    .    G    A    699.28    HaplotypeScoreFilter13    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.554;DP=208;Dels=0.0;FS=3.427;HRun=2;HaplotypeScore=60.2382;MQ=43.3;MQ0=8;MQRankSum=1.793;QD=3.36;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=P2562S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:167,41:208:99:729,0,4345
3    195510773    rs2911272    A    G    1855.37    HaplotypeScoreFilter13    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.909;DB;DP=204;Dels=0.0;FS=5.584;HRun=2;HaplotypeScore=44.0624;MQ=44.21;MQ0=8;MQRankSum=-0.349;QD=9.09;ReadPosRankSum=-1.725;SNPEFF_AMINO_ACID_CHANGE=S2560P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:111,93:204:99:1885,0,2858
3    195510786    rs2948677    T    G    1562.63    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.993;DB;DP=203;Dels=0.0;FS=2.832;HRun=1;HaplotypeScore=11.884;MQ=46.73;MQ0=3;MQRankSum=0.987;QD=7.7;ReadPosRankSum=-1.412;SNPEFF_AMINO_ACID_CHANGE=T2555;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:126,77:203:99:1593,0,3515
3    195510827    rs413807    C    T    1329.94    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=226;Dels=0.0;FS=1.212;HRun=0;HaplotypeScore=12.1441;MQ=50.97;MQ0=1;MQRankSum=1.973;QD=5.88;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=A2542T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:157,69:226:99:1360,0,4148
3    195510900    .    G    T    1155.87    HaplotypeScoreFilter13    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=0.063;DP=227;Dels=0.0;FS=7.22;HRun=1;HaplotypeScore=58.2937;MQ=54.1;MQ0=0;MQRankSum=1.152;QD=5.09;ReadPosRankSum=0.325;SNPEFF_AMINO_ACID_CHANGE=D2517E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:158,55:227:99:1186,0,4639
3    195510912    .    T    A    54.09    FSFilter60;QDFilter2    AB=0.865;AC=1;AF=0.50;AN=2;BaseQRankSum=0.879;DP=225;Dels=0.0;FS=60.703;HRun=1;HaplotypeScore=7.7411;MQ=54.24;MQ0=0;MQRankSum=-4.284;QD=0.24;ReadPosRankSum=-0.111;SNPEFF_AMINO_ACID_CHANGE=L2513;SNPEFF_CODON_CHANGE=ctA/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:192,30:225:84.08:84,0,5456
3    195510943    .    G    T    1068.34    HaplotypeScoreFilter13    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.824;DP=233;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=19.2415;MQ=54.73;MQ0=0;MQRankSum=-0.58;QD=4.59;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=S2503Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:173,59:233:99:1098,0,5440
3    195510996    .    G    A    1421.16    HaplotypeScoreFilter13    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=2.274;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=22.903;MQ=54.55;MQ0=1;MQRankSum=2.077;QD=5.68;ReadPosRankSum=-1.061;SNPEFF_AMINO_ACID_CHANGE=D2485;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:184,64:250:99:1451,0,5066
3    195511043    rs75030029    T    C    926.51    HaplotypeScoreFilter13    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.834;DB;DP=246;DS;Dels=0.0;FS=6.331;HRun=0;HaplotypeScore=58.2497;MQ=53.78;MQ0=3;MQRankSum=-0.399;QD=3.77;ReadPosRankSum=-0.392;SNPEFF_AMINO_ACID_CHANGE=T2470A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:184,55:246:99:957,0,5215
3    195511116    .    A    G    147.28    HaplotypeScoreFilter13;QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.729;DP=240;DS;Dels=0.0;FS=3.239;HRun=0;HaplotypeScore=19.1578;MQ=53.22;MQ0=2;MQRankSum=-5.169;QD=0.61;ReadPosRankSum=0.554;SNPEFF_AMINO_ACID_CHANGE=H2445;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:192,35:240:99:177,0,6047
3    195511142    rs430037    T    C    1869.38    HaplotypeScoreFilter13    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.742;DB;DP=220;DS;Dels=0.0;FS=1.857;HRun=0;HaplotypeScore=43.6158;MQ=53.24;MQ0=0;MQRankSum=-1.591;QD=8.5;ReadPosRankSum=0.448;SNPEFF_AMINO_ACID_CHANGE=N2437D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:130,89:220:99:1899,0,4024
3    195511204    rs423290    T    G    72.42    HaplotypeScoreFilter13;QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DB;DP=250;DS;Dels=0.0;FS=1.673;HRun=3;HaplotypeScore=33.946;MQ=52.28;MQ0=8;MQRankSum=-8.518;QD=0.29;ReadPosRankSum=-1.128;SNPEFF_AMINO_ACID_CHANGE=H2416P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:202,47:250:99:102,0,6100
3    195511273    .    G    A    31    HaplotypeScoreFilter13;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.072;DP=250;DS;Dels=0.0;FS=3.609;HRun=0;HaplotypeScore=30.7521;MQ=48.28;MQ0=5;MQRankSum=-1.557;QD=0.12;ReadPosRankSum=-1.607;SNPEFF_AMINO_ACID_CHANGE=A2393V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:219,30:250:60.99:61,0,6119
3    195511331    rs56359992    A    G    7487.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DB;DP=240;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.0497;MQ=48.23;MQ0=2;MQRankSum=-0.702;QD=31.2;ReadPosRankSum=-0.254;SNPEFF_AMINO_ACID_CHANGE=S2374P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:1,237:240:99:7487,605,0
3    195511336    .    G    C    2250.33    PASS    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.578;DP=242;DS;Dels=0.0;FS=5.933;HRun=0;HaplotypeScore=7.7854;MQ=48.14;MQ0=2;MQRankSum=-1.249;QD=9.3;ReadPosRankSum=0.679;SNPEFF_AMINO_ACID_CHANGE=T2372S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:149,93:242:99:2280,0,4058
3    195511380    .    G    A    109.67    HaplotypeScoreFilter13;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DP=232;DS;Dels=0.0;FS=6.693;HRun=0;HaplotypeScore=72.9582;MQ=44.26;MQ0=5;MQRankSum=-4.516;QD=0.47;ReadPosRankSum=1.628;SNPEFF_AMINO_ACID_CHANGE=D2357;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:207,25:232:99:140,0,5258
3    195511390    rs75692609    T    G    337.75    HaplotypeScoreFilter13;QDFilter2    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=0.095;DB;DP=233;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=66.8053;MQ=43.55;MQ0=5;MQRankSum=-3.66;QD=1.45;ReadPosRankSum=-4.067;SNPEFF_AMINO_ACID_CHANGE=H2354P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:190,40:233:99:368,0,5398
3    195511396    .    G    A    69.82    HaplotypeScoreFilter13;QDFilter2    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=3.445;DP=250;DS;Dels=0.0;FS=6.436;HRun=1;HaplotypeScore=28.9895;MQ=42.36;MQ0=5;MQRankSum=-3.362;QD=0.28;ReadPosRankSum=6.521;SNPEFF_AMINO_ACID_CHANGE=P2352L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:225,23:250:99:100,0,5719
3    195511403    rs78846267    C    T    143.79    HaplotypeScoreFilter13;QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=1.145;DB;DP=245;DS;Dels=0.0;FS=3.006;HRun=0;HaplotypeScore=27.8886;MQ=42.62;MQ0=5;MQRankSum=-4.924;QD=0.59;ReadPosRankSum=-4.226;SNPEFF_AMINO_ACID_CHANGE=A2350T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:203,40:245:99:174,0,4745
3    195511412    .    T    A    279.50    QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=1.354;DP=234;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5461;MQ=41.32;MQ0=5;MQRankSum=-5.389;QD=1.19;ReadPosRankSum=-3.242;SNPEFF_AMINO_ACID_CHANGE=T2347S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:193,41:234:99:309,0,5194
3    195511431    .    A    G    1266.58    HaplotypeScoreFilter13;MQFilter40    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DP=211;DS;Dels=0.0;FS=6.104;HRun=1;HaplotypeScore=20.4734;MQ=38.74;MQ0=5;MQRankSum=-3.246;QD=6.0;ReadPosRankSum=0.959;SNPEFF_AMINO_ACID_CHANGE=T2340;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:125,86:211:99:1297,0,3173
3    195511446    rs78227722    C    G    1779.46    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=7.277;DB;DP=186;DS;Dels=0.0;FS=17.744;HRun=2;HaplotypeScore=84.2177;MQ=36.52;MQ0=6;MQRankSum=-6.727;QD=9.57;ReadPosRankSum=-1.135;SNPEFF_AMINO_ACID_CHANGE=T2335;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:73,113:186:99:1809,0,1367
3    195511451    .    T    C    39.64    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DP=177;DS;Dels=0.0;FS=2.783;HRun=0;HaplotypeScore=103.4877;MQ=35.72;MQ0=7;MQRankSum=-3.576;QD=0.22;ReadPosRankSum=-2.235;SNPEFF_AMINO_ACID_CHANGE=T2334A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:140,31:177:69.63:70,0,3039
3    195511454    rs79777925    C    G    459.52    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=1.393;DB;DP=176;DS;Dels=0.0;FS=15.286;HRun=0;HaplotypeScore=102.8188;MQ=34.73;MQ0=7;MQRankSum=-4.611;QD=2.61;ReadPosRankSum=-0.414;SNPEFF_AMINO_ACID_CHANGE=D2333H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:123,53:176:99:490,0,2466
3    195511460    rs75618240    T    A    184.35    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=3.088;DB;DP=178;DS;Dels=0.0;FS=18.526;HRun=0;HaplotypeScore=59.2243;MQ=34.18;MQ0=7;MQRankSum=-1.592;QD=1.04;ReadPosRankSum=1.483;SNPEFF_AMINO_ACID_CHANGE=T2331S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:152,24:178:99:214,0,2886
3    195511474    rs77680876    A    G    490.29    HaplotypeScoreFilter13;MQFilter40    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.045;DB;DP=159;DS;Dels=0.0;FS=30.876;HRun=2;HaplotypeScore=20.6299;MQ=32.9;MQ0=5;MQRankSum=-2.515;QD=3.08;ReadPosRankSum=-2.946;SNPEFF_AMINO_ACID_CHANGE=L2326P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:104,55:159:99:520,0,2188
3    195511523    rs142766505    C    T    99.07    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=204;Dels=0.0;FS=11.563;HRun=0;HaplotypeScore=33.309;MQ=25.27;MQ0=13;MQRankSum=0.645;QD=0.49;ReadPosRankSum=1.914;SNPEFF_AMINO_ACID_CHANGE=A2310T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:34,18:204:99:129,0,363
3    195511534    rs75459784    T    G    221.09    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=236;Dels=0.0;FS=3.138;HRun=1;HaplotypeScore=101.4822;MQ=26.77;MQ0=13;MQRankSum=-1.914;QD=0.94;ReadPosRankSum=-1.438;SNPEFF_AMINO_ACID_CHANGE=H2306P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:177,48:236:99:251,0,3473
3    195511556    rs79961534    T    A    185.84    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=1.762;DB;DP=247;DS;Dels=0.0;FS=22.292;HRun=0;HaplotypeScore=32.381;MQ=29.79;MQ0=12;MQRankSum=-0.339;QD=0.75;ReadPosRankSum=-0.998;SNPEFF_AMINO_ACID_CHANGE=T2299S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:214,32:247:99:216,0,4346
3    195511575    rs74422441    A    G    1254.55    HaplotypeScoreFilter13;MQFilter40    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=246;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=21.7297;MQ=35.54;MQ0=11;MQRankSum=-0.068;QD=5.1;ReadPosRankSum=-1.52;SNPEFF_AMINO_ACID_CHANGE=T2292;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:161,85:246:99:1285,0,3492
3    195511590    rs3103955    A    G    6107.60    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=243;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=49.0311;MQ=40.76;MQ0=4;QD=25.13;SNPEFF_AMINO_ACID_CHANGE=T2287;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:1,235:243:99:6108,532,0
3    195511638    .    G    A    2795.40    HaplotypeScoreFilter13    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=2.638;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=26.8437;MQ=50.33;MQ0=1;MQRankSum=-2.363;QD=11.18;ReadPosRankSum=-1.172;SNPEFF_AMINO_ACID_CHANGE=T2271;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:136,109:250:99:2825,0,3846
3    195511690    .    G    C    2374.91    HaplotypeScoreFilter13    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.795;DP=250;DS;Dels=0.0;FS=10.244;HRun=0;HaplotypeScore=27.2059;MQ=48.91;MQ0=6;MQRankSum=-2.749;QD=9.5;ReadPosRankSum=0.625;SNPEFF_AMINO_ACID_CHANGE=T2254S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:143,107:250:99:2405,0,3855
3    195511740    .    C    G    1685.10    HaplotypeScoreFilter13    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.826;DP=250;DS;Dels=0.0;FS=36.728;HRun=0;HaplotypeScore=42.2882;MQ=46.46;MQ0=14;MQRankSum=-7.156;QD=6.74;ReadPosRankSum=-1.691;SNPEFF_AMINO_ACID_CHANGE=Q2237H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:141,108:250:99:1715,0,4203
3    195511743    rs67146868    T    A    99.83    HaplotypeScoreFilter13;QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=250;DS;Dels=0.0;FS=12.022;HRun=0;HaplotypeScore=43.7288;MQ=46.5;MQ0=14;MQRankSum=-7.419;QD=0.4;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=G2236;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:195,53:250:99:130,0,5771
3    195511780    rs391928    G    A    812.72    HaplotypeScoreFilter13    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=2.575;DB;DP=250;DS;Dels=0.0;FS=7.627;HRun=1;HaplotypeScore=77.0074;MQ=47.69;MQ0=11;MQRankSum=5.036;QD=3.25;ReadPosRankSum=1.087;SNPEFF_AMINO_ACID_CHANGE=P2224L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:204,46:250:99:843,0,5119
3    195511783    rs75997030    A    G    1405.89    HaplotypeScoreFilter13    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=6.44;DB;DP=250;DS;Dels=0.0;FS=7.741;HRun=3;HaplotypeScore=71.1793;MQ=47.51;MQ0=12;MQRankSum=-6.286;QD=5.62;ReadPosRankSum=-0.972;SNPEFF_AMINO_ACID_CHANGE=I2223T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:140,108:250:99:1436,0,3918
3    195511814    rs72499650    T    C    2247.02    HaplotypeScoreFilter13    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.422;DB;DP=249;DS;Dels=0.0;FS=8.539;HRun=1;HaplotypeScore=45.989;MQ=44.34;MQ0=20;MQRankSum=8.481;QD=9.02;ReadPosRankSum=-0.575;SNPEFF_AMINO_ACID_CHANGE=S2213G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:160,89:249:99:2277,0,3261
3    195511815    .    G    A    164.75    HaplotypeScoreFilter13;QDFilter2    AB=0.903;AC=1;AF=0.50;AN=2;BaseQRankSum=0.257;DP=249;DS;Dels=0.0;FS=7.923;HRun=0;HaplotypeScore=46.9823;MQ=44.05;MQ0=22;MQRankSum=-2.214;QD=0.66;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=T2212;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:224,24:249:99:195,0,5476
3    195511836    rs75072939    C    G    445.18    HaplotypeScoreFilter13;QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.353;DB;DP=249;DS;Dels=0.0;FS=5.465;HRun=0;HaplotypeScore=23.9116;MQ=42.09;MQ0=30;MQRankSum=-4.312;QD=1.79;ReadPosRankSum=0.769;SNPEFF_AMINO_ACID_CHANGE=Q2205H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:182,67:249:99:475,0,4397
3    195511839    .    A    T    155.51    HaplotypeScoreFilter13;QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.758;DP=249;DS;Dels=0.0;FS=0.884;HRun=0;HaplotypeScore=21.249;MQ=42.2;MQ0=28;MQRankSum=-2.051;QD=0.62;ReadPosRankSum=-2.093;SNPEFF_AMINO_ACID_CHANGE=G2204;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:210,35:249:99:186,0,4773
3    195511870    .    G    A    313.40    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DP=249;DS;Dels=0.0;FS=5.851;HRun=1;HaplotypeScore=46.484;MQ=37.05;MQ0=38;MQRankSum=-2.805;QD=1.26;ReadPosRankSum=0.645;SNPEFF_AMINO_ACID_CHANGE=P2194L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:190,42:249:99:343,0,3995
3    195511911    .    G    A    677.78    HaplotypeScoreFilter13;MQFilter40    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=1.566;DP=248;DS;Dels=0.0;FS=33.687;HRun=0;HaplotypeScore=36.5887;MQ=31.81;MQ0=34;MQRankSum=1.18;QD=2.73;ReadPosRankSum=-1.412;SNPEFF_AMINO_ACID_CHANGE=T2180;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:205,42:248:99:708,0,3053
3    195511937    .    C    T    1142.29    HaplotypeScoreFilter13;MQFilter40    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DP=249;DS;Dels=0.0;FS=14.939;HRun=1;HaplotypeScore=31.8796;MQ=30.99;MQ0=29;MQRankSum=2.788;QD=4.59;ReadPosRankSum=-1.412;SNPEFF_AMINO_ACID_CHANGE=G2172S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:176,73:249:99:1172,0,2556
3    195511959    .    G    A    496.98    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DP=250;DS;Dels=0.0;FS=4.251;HRun=0;HaplotypeScore=40.9123;MQ=29.41;MQ0=29;MQRankSum=2.936;QD=1.99;ReadPosRankSum=0.53;SNPEFF_AMINO_ACID_CHANGE=T2164;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:206,44:250:99:527,0,3273
3    195511973    rs2688551    A    G    120.15    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=2.826;DB;DP=235;DS;Dels=0.0;FS=28.205;HRun=2;HaplotypeScore=51.0603;MQ=29.58;MQ0=25;MQRankSum=-1.857;QD=0.51;ReadPosRankSum=-1.779;SNPEFF_AMINO_ACID_CHANGE=S2160P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:196,38:235:99:150,0,3486
3    195511983    .    A    G    1061.69    HaplotypeScoreFilter13;MQFilter40    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=3.655;DP=216;DS;Dels=0.0;FS=5.568;HRun=1;HaplotypeScore=98.8762;MQ=32.74;MQ0=18;MQRankSum=0.678;QD=4.92;ReadPosRankSum=1.204;SNPEFF_AMINO_ACID_CHANGE=G2156;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:146,66:216:99:1092,0,2730
3    195511993    rs3107749    A    G    1536.15    HaplotypeScoreFilter13;MQFilter40    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=5.311;DB;DP=211;DS;Dels=0.0;FS=2.178;HRun=0;HaplotypeScore=56.5495;MQ=35.61;MQ0=17;MQRankSum=-3.829;QD=7.28;ReadPosRankSum=0.124;SNPEFF_AMINO_ACID_CHANGE=V2153A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:112,99:211:99:1566,0,2416
3    195512004    rs148317288    T    G    5145.86    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=212;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.0608;MQ=38.25;MQ0=14;QD=24.27;SNPEFF_AMINO_ACID_CHANGE=E2149D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,212:212:99:5146,448,0
3    195512042    rs6805660    T    C    7117.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=244;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3594;MQ=43.57;MQ0=13;QD=29.05;SNPEFF_AMINO_ACID_CHANGE=T2137A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,243:244:99:7118,575,0
3    195512079    .    C    A    1278.99    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.829;DP=248;DS;Dels=0.0;FS=11.661;HRun=0;HaplotypeScore=9.6079;MQ=49.1;MQ0=3;MQRankSum=-4.524;QD=5.16;ReadPosRankSum=0.869;SNPEFF_AMINO_ACID_CHANGE=G2124;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:175,73:248:99:1309,0,5386
3    195512103    rs437805    G    A    1560.01    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=4.303;DB;DP=230;DS;Dels=0.0;FS=0.568;HRun=0;HaplotypeScore=6.5868;MQ=49.15;MQ0=3;MQRankSum=1.264;QD=6.78;ReadPosRankSum=0.077;SNPEFF_AMINO_ACID_CHANGE=T2116;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:169,61:230:99:1590,0,4603
3    195512107    .    T    A    7433.29    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DP=230;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=55.9741;MQ=49.28;MQ0=0;QD=32.32;SNPEFF_AMINO_ACID_CHANGE=D2115V;SNPEFF_CODON_CHANGE=gAc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,230:230:99:7433,596,0
3    195512117    .    C    G    874.51    HaplotypeScoreFilter13    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=4.018;DP=218;DS;Dels=0.0;FS=3.952;HRun=2;HaplotypeScore=45.267;MQ=49.02;MQ0=0;MQRankSum=-4.184;QD=4.01;ReadPosRankSum=0.99;SNPEFF_AMINO_ACID_CHANGE=A2112P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:166,51:218:99:905,0,4948
3    195512118    .    G    A    881.47    HaplotypeScoreFilter13    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=1.935;DP=222;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=46.2664;MQ=49.23;MQ0=0;MQRankSum=3.163;QD=3.97;ReadPosRankSum=-0.596;SNPEFF_AMINO_ACID_CHANGE=T2111;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:181,40:222:99:911,0,5202
3    195512186    .    T    C    7092.53    PASS    AC=2;AF=1.00;AN=2;DP=228;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.3202;MQ=47.88;MQ0=1;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=I2089V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:1,227:228:99:7093,563,0
3    195512212    rs75588776    G    T    1156.48    HaplotypeScoreFilter13    AB=0.751;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.167;DB;DP=221;DS;Dels=0.0;FS=2.051;HRun=0;HaplotypeScore=36.3137;MQ=43.83;MQ0=2;MQRankSum=1.364;QD=5.23;ReadPosRankSum=2.148;SNPEFF_AMINO_ACID_CHANGE=P2080H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:166,55:221:99:1186,0,4343
3    195512245    rs62282486    T    C    5367.29    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.567;DB;DP=205;DS;Dels=0.0;FS=1.547;HRun=0;HaplotypeScore=35.3964;MQ=35.73;MQ0=4;MQRankSum=1.25;QD=26.18;ReadPosRankSum=0.111;SNPEFF_AMINO_ACID_CHANGE=N2069S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:8,197:205:99:5367,312,0
3    195512287    rs113602668    G    A    1267.22    HaplotypeScoreFilter13    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.916;DB;DP=216;Dels=0.0;FS=5.735;HRun=3;HaplotypeScore=31.6741;MQ=42.56;MQ0=3;MQRankSum=-0.791;QD=5.84;ReadPosRankSum=0.493;SNPEFF_AMINO_ACID_CHANGE=S2055F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:154,62:216:99:1297,0,4372
3    195512343    rs113457754    G    A    1695.73    HaplotypeScoreFilter13    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=7.315;DB;DP=220;Dels=0.0;FS=0.562;HRun=0;HaplotypeScore=33.4811;MQ=52.91;MQ0=0;MQRankSum=0.398;QD=7.71;ReadPosRankSum=0.379;SNPEFF_AMINO_ACID_CHANGE=T2036;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:157,62:220:99:1726,0,4150
3    195512373    rs112774151    G    GGAT    3350.50    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=219;FS=0.566;HRun=0;HaplotypeScore=1522.3477;IndelType=I;MQ=52.16;MQ0=0;MQRankSum=1.353;QD=14.83;ReadPosRankSum=1.762;SNPEFF_AMINO_ACID_CHANGE=S2026YP;SNPEFF_CODON_CHANGE=tcc/tATCcc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:173,52:219:99:3351,0,6176
3    195512567    rs150659095    G    A    109.34    QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.982;DB;DP=242;DS;Dels=0.0;FS=29.906;HRun=0;HaplotypeScore=9.1888;MQ=49.22;MQ0=13;MQRankSum=-5.001;QD=0.45;ReadPosRankSum=-1.973;SNPEFF_AMINO_ACID_CHANGE=P1962S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:199,43:242:99:139,0,5438
3    195512568    .    T    C    82.47    QDFilter2    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=3.326;DP=245;DS;Dels=0.0;FS=29.906;HRun=0;HaplotypeScore=9.1888;MQ=49.24;MQ0=13;MQRankSum=-3.62;QD=0.34;ReadPosRankSum=-1.532;SNPEFF_AMINO_ACID_CHANGE=V1961;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:204,39:245:99:112,0,5305
3    195512597    rs6799339    G    A    902.93    HaplotypeScoreFilter13    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=246;DS;Dels=0.0;FS=18.07;HRun=0;HaplotypeScore=22.357;MQ=48.95;MQ0=15;MQRankSum=-3.688;QD=3.67;ReadPosRankSum=0.796;SNPEFF_AMINO_ACID_CHANGE=P1952S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:184,62:246:99:933,0,5058
3    195512665    rs79300100    G    A    190.22    HaplotypeScoreFilter13;QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.88;DB;DP=241;DS;Dels=0.0;FS=30.046;HRun=0;HaplotypeScore=27.441;MQ=51.41;MQ0=9;MQRankSum=-7.34;QD=0.79;ReadPosRankSum=0.373;SNPEFF_AMINO_ACID_CHANGE=A1929V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:203,38:241:99:220,0,6000
3    195512686    rs79043683    G    T    175.94    HaplotypeScoreFilter13;QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.726;DB;DP=244;DS;Dels=0.0;FS=45.494;HRun=0;HaplotypeScore=18.4747;MQ=51.66;MQ0=6;MQRankSum=-7.366;QD=0.72;ReadPosRankSum=-0.614;SNPEFF_AMINO_ACID_CHANGE=P1922H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:207,37:244:99:206,0,6459
3    195512693    rs79034632    A    G    241.09    QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.301;DB;DP=249;DS;Dels=0.0;FS=48.396;HRun=2;HaplotypeScore=9.5015;MQ=52.1;MQ0=5;MQRankSum=-7.06;QD=0.97;ReadPosRankSum=-0.324;SNPEFF_AMINO_ACID_CHANGE=S1920P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:208,41:249:99:271,0,6438
3    195512767    rs2641778    T    G    1440.38    HaplotypeScoreFilter13    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=4.053;DB;DP=242;DS;Dels=0.0;FS=3.417;HRun=1;HaplotypeScore=14.1521;MQ=55.13;MQ0=1;MQRankSum=-6.692;QD=5.95;ReadPosRankSum=0.253;SNPEFF_AMINO_ACID_CHANGE=N1895T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:171,71:242:99:1470,0,5342
3    195512768    rs2688553    T    A    1398.39    HaplotypeScoreFilter13    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=4.567;DB;DP=244;DS;Dels=0.0;FS=2.64;HRun=1;HaplotypeScore=15.099;MQ=55.25;MQ0=1;MQRankSum=-5.335;QD=5.73;ReadPosRankSum=0.61;SNPEFF_AMINO_ACID_CHANGE=N1895Y;SNPEFF_CODON_CHANGE=Aac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:174,69:244:99:1428,0,5524
3    195513102    rs3103958    A    G    3972.06    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.632;DB;DP=250;DS;Dels=0.0;FS=7.164;HRun=1;HaplotypeScore=4.5304;MQ=54.98;MQ0=1;MQRankSum=2.472;QD=15.89;ReadPosRankSum=-0.362;SNPEFF_AMINO_ACID_CHANGE=S1783;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:108,142:250:99:3972,0,3325
3    195513173    rs77448757    G    A    193.57    HaplotypeScoreFilter13;QDFilter2    AB=0.888;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.487;DB;DP=242;DS;Dels=0.0;FS=3.02;HRun=0;HaplotypeScore=32.3289;MQ=50.5;MQ0=1;MQRankSum=-1.751;QD=0.8;ReadPosRankSum=-1.611;SNPEFF_AMINO_ACID_CHANGE=P1760S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:215,27:242:99:224,0,6187
3    195513180    rs77724343    C    G    378.01    HaplotypeScoreFilter13;QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.887;DB;DP=243;DS;Dels=0.0;FS=7.3;HRun=0;HaplotypeScore=43.1965;MQ=50.69;MQ0=0;MQRankSum=-7.751;QD=1.56;ReadPosRankSum=-0.599;SNPEFF_AMINO_ACID_CHANGE=Q1757H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:189,53:243:99:408,0,5803
3    195513207    rs78338106    A    G    1619.33    HaplotypeScoreFilter13    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.454;DB;DP=222;DS;Dels=0.0;FS=19.112;HRun=1;HaplotypeScore=79.1392;MQ=51.55;MQ0=0;MQRankSum=-7.762;QD=7.29;ReadPosRankSum=0.191;SNPEFF_AMINO_ACID_CHANGE=T1748;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:124,98:222:99:1649,0,3967
3    195513345    rs71321841    A    C    1616.22    HaplotypeScoreFilter13    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.296;DB;DP=203;Dels=0.0;FS=2.045;HRun=0;HaplotypeScore=26.3932;MQ=46.12;MQ0=2;MQRankSum=0.947;QD=7.96;ReadPosRankSum=0.48;SNPEFF_AMINO_ACID_CHANGE=V1702;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:132,71:203:99:1646,0,3269
3    195513364    rs79986529    C    T    903.62    HaplotypeScoreFilter13    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.786;DB;DP=167;Dels=0.0;FS=31.095;HRun=0;HaplotypeScore=22.9892;MQ=42.9;MQ0=3;MQRankSum=-1.672;QD=5.41;ReadPosRankSum=-0.242;SNPEFF_AMINO_ACID_CHANGE=R1696H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:107,51:167:99:934,0,2538
3    195513383    rs80123784    T    A    518.62    HaplotypeScoreFilter13;MQFilter40    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=3.138;DB;DP=139;Dels=0.0;FS=31.399;HRun=1;HaplotypeScore=23.3193;MQ=39.75;MQ0=4;MQRankSum=-2.333;QD=3.73;ReadPosRankSum=0.347;SNPEFF_AMINO_ACID_CHANGE=T1690S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:99,40:139:99:549,0,2430
3    195513420    rs71321842    G    A    131.64    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=250;DS;Dels=0.0;FS=19.063;HRun=0;HaplotypeScore=57.9881;MQ=37.55;MQ0=17;MQRankSum=0.723;QD=0.53;ReadPosRankSum=-0.647;SNPEFF_AMINO_ACID_CHANGE=H1677;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:223,27:250:99:162,0,4188
3    195513426    rs77396971    G    T    912.54    HaplotypeScoreFilter13;MQFilter40    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=6.986;DB;DP=250;DS;Dels=0.0;FS=34.485;HRun=0;HaplotypeScore=43.0818;MQ=36.46;MQ0=16;MQRankSum=-3.436;QD=3.65;ReadPosRankSum=-0.617;SNPEFF_AMINO_ACID_CHANGE=T1675;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:156,94:250:99:943,0,2892
3    195513433    rs74419078    G    A    582.90    HaplotypeScoreFilter13;MQFilter40    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.521;DB;DP=250;DS;Dels=0.0;FS=31.113;HRun=0;HaplotypeScore=64.4767;MQ=36.56;MQ0=14;MQRankSum=-2.492;QD=2.33;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=A1673V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:193,56:250:99:613,0,3856
3    195513474    rs77382269    T    G    1118.20    HaplotypeScoreFilter13    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.113;DB;DP=247;DS;Dels=0.0;FS=1.293;HRun=1;HaplotypeScore=26.6796;MQ=40.28;MQ0=13;MQRankSum=-1.434;QD=4.53;ReadPosRankSum=2.652;SNPEFF_AMINO_ACID_CHANGE=T1659;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:163,84:247:99:1148,0,3512
3    195513491    rs79338930    G    T    638.67    HaplotypeScoreFilter13    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.922;DB;DP=236;DS;Dels=0.0;FS=2.319;HRun=0;HaplotypeScore=20.5954;MQ=41.77;MQ0=12;MQRankSum=-3.057;QD=2.71;ReadPosRankSum=-0.311;SNPEFF_AMINO_ACID_CHANGE=P1654T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:163,73:236:99:669,0,3795
3    195513502    rs74664428    T    G    614.37    HaplotypeScoreFilter13    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=207;DS;Dels=0.0;FS=2.476;HRun=1;HaplotypeScore=20.4046;MQ=42.99;MQ0=8;MQRankSum=-3.634;QD=2.97;ReadPosRankSum=-3.884;SNPEFF_AMINO_ACID_CHANGE=H1650P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:149,53:207:99:644,0,3688
3    195513515    .    C    T    127.58    QDFilter2    AB=0.893;AC=1;AF=0.50;AN=2;BaseQRankSum=0.252;DP=188;DS;Dels=0.0;FS=3.387;HRun=0;HaplotypeScore=11.3872;MQ=44.24;MQ0=6;MQRankSum=-2.689;QD=0.68;ReadPosRankSum=-1.18;SNPEFF_AMINO_ACID_CHANGE=A1646T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:167,20:188:99:158,0,3744
3    195513519    .    A    T    42.02    QDFilter2    AB=0.905;AC=1;AF=0.50;AN=2;BaseQRankSum=0.002;DP=190;DS;Dels=0.0;FS=2.215;HRun=0;HaplotypeScore=11.3872;MQ=44.0;MQ0=6;MQRankSum=-2.326;QD=0.22;ReadPosRankSum=-0.242;SNPEFF_AMINO_ACID_CHANGE=G1644;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:171,18:190:72.01:72,0,4228
3    195513598    rs57748294    G    A    798.12    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DB;DP=246;DS;Dels=0.0;FS=23.469;HRun=1;HaplotypeScore=9.7287;MQ=46.99;MQ0=3;MQRankSum=-2.075;QD=3.24;ReadPosRankSum=-2.646;SNPEFF_AMINO_ACID_CHANGE=P1618L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:187,56:246:99:828,0,5222
3    195513680    rs7372250    A    T    1497.40    HaplotypeScoreFilter13    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.348;DB;DP=250;DS;Dels=0.0;FS=7.61;HRun=0;HaplotypeScore=24.6962;MQ=47.74;MQ0=3;MQRankSum=1.454;QD=5.99;ReadPosRankSum=-0.538;SNPEFF_AMINO_ACID_CHANGE=S1591T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:175,72:250:99:1527,0,4600
3    195513743    rs59668135    G    T    231.37    HaplotypeScoreFilter13;QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.736;DB;DP=226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.7992;MQ=42.03;MQ0=7;MQRankSum=-1.018;QD=1.02;ReadPosRankSum=-1.979;SNPEFF_AMINO_ACID_CHANGE=P1570T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:195,31:226:99:261,0,5217
3    195513779    rs3103959    C    T    1081.24    HaplotypeScoreFilter13;MQFilter40    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=3.285;DB;DP=170;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=90.7302;MQ=37.19;MQ0=12;MQRankSum=0.206;QD=6.36;ReadPosRankSum=1.41;SNPEFF_AMINO_ACID_CHANGE=A1558T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:97,58:170:99:1111,0,1983
3    195513806    .    C    G    133.73    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=4.305;DP=158;Dels=0.0;FS=11.863;HRun=0;HaplotypeScore=19.9155;MQ=32.82;MQ0=19;MQRankSum=-6.594;QD=0.85;ReadPosRankSum=-1.492;SNPEFF_AMINO_ACID_CHANGE=D1549H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:118,40:158:99:164,0,2722
3    195513817    .    G    A    179.28    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.868;DP=138;Dels=0.0;FS=14.432;HRun=0;HaplotypeScore=27.8941;MQ=30.46;MQ0=20;MQRankSum=-4.15;QD=1.3;ReadPosRankSum=0.068;SNPEFF_AMINO_ACID_CHANGE=A1545V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:106,31:138:99:209,0,2447
3    195513906    .    T    G    129.26    MQFilter40;QDFilter2    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DP=153;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8735;MQ=13.84;MQ0=114;MQRankSum=-0.103;QD=0.84;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=T1515;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:114,39:153:99:159,0,624
3    195513991    .    G    A    68.01    MQFilter40;QDFilter2    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.41;MQ0=124;MQRankSum=-0.696;QD=0.5;ReadPosRankSum=2.927;SNPEFF_AMINO_ACID_CHANGE=T1487M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:96,41:137:98:98,0,182
3    195514324    rs78009073    G    A    165.46    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.84;MQ0=44;MQRankSum=0.747;QD=3.18;ReadPosRankSum=0.747;SNPEFF_AMINO_ACID_CHANGE=P1376L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:26,25:52:21.02:198,21,0
3    195514379    rs79461778    T    C    194.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.55;MQ0=20;QD=6.27;SNPEFF_AMINO_ACID_CHANGE=T1358A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:16,15:31:21.03:227,21,0
3    195514393    rs12491056    A    G    244.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=13.41;MQ0=23;QD=7.41;SNPEFF_AMINO_ACID_CHANGE=V1353A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:20,13:33:27.04:277,27,0
3    195514403    rs79754259    C    T    226.29    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.95;MQ0=24;QD=6.86;SNPEFF_AMINO_ACID_CHANGE=A1350T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:18,14:33:27.02:259,27,0
3    195514407    rs80139068    G    A    226.29    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.58;MQ0=26;QD=6.47;SNPEFF_AMINO_ACID_CHANGE=T1348;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:26,9:35:27.02:259,27,0
3    195514859    .    C    T    57.43    MQFilter40;QDFilter2    AB=0.93;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8835;MQ=7.7;MQ0=77;MQRankSum=0.0;QD=0.66;ReadPosRankSum=1.307;SNPEFF_AMINO_ACID_CHANGE=A1198T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:80,6:87:43.11:87,0,43
3    195514862    .    G    C    65.68    MQFilter40;QDFilter2    AB=0.933;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8835;MQ=7.73;MQ0=79;MQRankSum=-0.365;QD=0.73;ReadPosRankSum=1.036;SNPEFF_AMINO_ACID_CHANGE=H1197D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:84,6:90:6.70:95,0,7
3    195514873    .    G    A    156.73    MQFilter40;QDFilter2    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9053;MQ=8.96;MQ0=72;MQRankSum=0.849;QD=1.8;ReadPosRankSum=0.979;SNPEFF_AMINO_ACID_CHANGE=A1193V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:75,12:87:9.42:186,0,9
3    195514882    .    G    A    165.23    MQFilter40;QDFilter2    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=87;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.8629;MQ=10.28;MQ0=69;MQRankSum=1.084;QD=1.9;ReadPosRankSum=1.38;SNPEFF_AMINO_ACID_CHANGE=P1190L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:74,13:87:34.06:195,0,34
3    195514887    .    A    G    250.60    MQFilter40    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=0.627;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.8523;MQ=12.15;MQ0=69;MQRankSum=0.705;QD=2.75;ReadPosRankSum=1.802;SNPEFF_AMINO_ACID_CHANGE=T1188;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:72,19:91:85.89:281,0,86
3    195514948    .    G    A    730.08    MQFilter40    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.653;DP=109;Dels=0.0;FS=3.569;HRun=1;HaplotypeScore=7.8045;MQ=23.58;MQ0=50;MQRankSum=2.98;QD=6.7;ReadPosRankSum=1.984;SNPEFF_AMINO_ACID_CHANGE=P1168L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:58,51:109:99:760,0,515
3    195514956    .    C    G    495.94    MQFilter40    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DP=113;Dels=0.0;FS=10.114;HRun=0;HaplotypeScore=4.4756;MQ=26.57;MQ0=46;MQRankSum=-0.451;QD=4.39;ReadPosRankSum=-2.485;SNPEFF_AMINO_ACID_CHANGE=Q1165H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:73,40:113:99:526,0,946
3    195514969    rs192133475    G    A    724.73    MQFilter40    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.154;DB;DP=111;Dels=0.0;FS=10.825;HRun=0;HaplotypeScore=0.5784;MQ=28.86;MQ0=32;MQRankSum=1.609;QD=6.53;ReadPosRankSum=-2.084;SNPEFF_AMINO_ACID_CHANGE=A1161V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:65,46:111:99:755,0,965
3    195515003    rs76196931    T    C    857.41    MQFilter40    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.792;DB;DP=123;Dels=0.0;FS=19.631;HRun=0;HaplotypeScore=9.7198;MQ=35.54;MQ0=16;MQRankSum=-3.545;QD=6.97;ReadPosRankSum=-1.62;SNPEFF_AMINO_ACID_CHANGE=T1150A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:66,57:123:99:887,0,1292
3    195515008    .    C    G    79.85    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.891;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=41.9602;MQ=35.44;MQ0=17;MQRankSum=0.86;QD=0.58;ReadPosRankSum=-4.61;SNPEFF_AMINO_ACID_CHANGE=G1148A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:122,15:137:99:110,0,2488
3    195515017    .    A    G    1931.24    HaplotypeScoreFilter13;MQFilter40    AB=0.285;AC=1;AF=0.50;AN=2;BaseQRankSum=3.231;DP=151;Dels=0.0;FS=1.953;HRun=0;HaplotypeScore=50.5362;MQ=36.23;MQ0=17;MQRankSum=-1.677;QD=12.79;ReadPosRankSum=3.961;SNPEFF_AMINO_ACID_CHANGE=V1145A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:43,108:151:99:1961,0,871
3    195515025    .    A    G    1235.17    HaplotypeScoreFilter13;MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.329;DP=160;Dels=0.0;FS=1.641;HRun=1;HaplotypeScore=60.7735;MQ=37.35;MQ0=16;MQRankSum=0.722;QD=7.72;ReadPosRankSum=1.162;SNPEFF_AMINO_ACID_CHANGE=T1142;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:87,73:160:99:1265,0,1816
3    195515031    .    G    A    54.77    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=3.294;DP=174;Dels=0.0;FS=1.277;HRun=0;HaplotypeScore=43.6722;MQ=37.7;MQ0=17;MQRankSum=-3.33;QD=0.31;ReadPosRankSum=1.336;SNPEFF_AMINO_ACID_CHANGE=T1140;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:151,23:174:84.76:85,0,3118
3    195515122    .    G    C    1592.88    HaplotypeScoreFilter13    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.504;DP=220;Dels=0.0;FS=4.699;HRun=0;HaplotypeScore=35.5643;MQ=44.63;MQ0=15;MQRankSum=-2.649;QD=7.24;ReadPosRankSum=1.421;SNPEFF_AMINO_ACID_CHANGE=T1110S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:131,88:220:99:1623,0,3270
3    195515175    rs112260425    A    G    1171.43    HaplotypeScoreFilter13    AB=0.601;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.661;DB;DP=249;DS;Dels=0.0;FS=0.562;HRun=1;HaplotypeScore=17.343;MQ=44.78;MQ0=24;MQRankSum=-5.051;QD=4.69;ReadPosRankSum=1.367;SNPEFF_AMINO_ACID_CHANGE=T1092;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:149,99:249:99:1201,0,4398
3    195515190    rs112448158    G    A    1130.98    HaplotypeScoreFilter13    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.778;DB;DP=246;DS;Dels=0.0;FS=2.004;HRun=0;HaplotypeScore=26.6963;MQ=45.78;MQ0=20;MQRankSum=-3.551;QD=4.56;ReadPosRankSum=0.131;SNPEFF_AMINO_ACID_CHANGE=T1087;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:168,77:246:99:1161,0,4469
3    195515295    rs79955220    A    C    1817.43    HaplotypeScoreFilter13    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=3.044;DB;DP=175;DS;Dels=0.0;FS=2.157;HRun=2;HaplotypeScore=13.965;MQ=51.79;MQ0=5;MQRankSum=1.852;QD=10.39;ReadPosRankSum=0.95;SNPEFF_AMINO_ACID_CHANGE=G1052;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:103,72:175:99:1847,0,2622
3    195515315    rs71617321    A    G    4662.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=52.88;MQ0=5;QD=28.96;SNPEFF_AMINO_ACID_CHANGE=F1046L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:0,160:161:99:4663,379,0
3    195515340    rs79661483    G    A    1596.78    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.631;DB;DP=150;Dels=0.0;FS=0.688;HRun=0;HaplotypeScore=7.1521;MQ=51.8;MQ0=7;MQRankSum=3.238;QD=10.65;ReadPosRankSum=0.695;SNPEFF_AMINO_ACID_CHANGE=H1037;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    0/1:89,61:150:99:1627,0,1976
3    195515568    rs62282504    C    T    635.57    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.156;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9928;MQ=59.22;MQ0=0;MQRankSum=0.454;QD=13.24;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=G935;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    0/1:25,23:48:99:666,0,800
3    195515594    rs13095016    C    G    1389.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=E927Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1422,108,0
3    195515617    rs2641776    G    C    1248.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=T919S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,37:37:96.28:1281,96,0
3    195516630    rs3103954    G    T    8317.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9246;MQ=59.72;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=S581;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8318,623,0
3    195516878    rs2177336    T    C    2793.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=T499A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2827,220,0
3    195517258    rs1106502    G    A    5311.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=36.63;SNPEFF_AMINO_ACID_CHANGE=T372I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,145:145:99:5311,394,0
3    195517321    rs1104760    G    A    5519.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4932;MQ=59.7;MQ0=0;QD=35.61;SNPEFF_AMINO_ACID_CHANGE=T351I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,155:155:99:5519,406,0
3    195517553    rs882605    A    C    5200.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=F274V;SNPEFF_CODON_CHANGE=Ttt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,154:154:99:5201,388,0
3    195518112    .    T    TGTCTCCTGCGTAACA    19926.98    PASS    AC=2;AF=1.00;AN=2;DP=117;FS=0.0;HRun=0;HaplotypeScore=1120.1891;IndelType=I;MQ=36.59;MQ0=0;QD=170.32;SNPEFF_AMINO_ACID_CHANGE=T113MLRRRP;SNPEFF_CODON_CHANGE=aca/aTGTTACGCAGGAGACca;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_3_195505661_195518368;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463781    GT:AD:DP:GQ:PL    1/1:66,38:117:99:19927,316,0
3    195518330    rs3107764    C    G    5158.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5572;MQ=57.87;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=A15P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195515489_195518372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392409    GT:AD:DP:GQ:PL    1/1:0,152:152:99:5159,385,0
3    195518550    rs111371408    T    G    34.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=4.32;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    0/1:5,3:8:64.58:65,0,180
3    195518578    rs112095545    C    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MUC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346145    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
3    195595632    rs13087251    A    G    320.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316664    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:353,27,0
3    195686891    .    T    C    41.63    MQFilter40;QDFilter2    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.992;DP=25;Dels=0.0;FS=6.803;HRun=0;HaplotypeScore=0.5784;MQ=21.33;MQ0=5;MQRankSum=1.181;QD=1.67;ReadPosRankSum=0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354559    GT:AD:DP:GQ:PL    0/1:17,8:25:71.62:72,0,259
3    195692347    rs62282794    G    A    311.53    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.433;DB;DP=103;Dels=0.0;FS=1.034;HRun=0;HaplotypeScore=1.7608;MQ=48.78;MQ0=13;MQRankSum=-5.643;QD=3.02;ReadPosRankSum=-2.062;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354559    GT:AD:DP:GQ:PL    0/1:58,45:103:99:342,0,1891
3    195692419    rs77887672    C    G    855.76    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.359;DB;DP=138;Dels=0.0;FS=4.593;HRun=1;HaplotypeScore=0.9789;MQ=49.39;MQ0=11;MQRankSum=-8.07;QD=6.2;ReadPosRankSum=-0.542;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354559    GT:AD:DP:GQ:PL    0/1:78,60:138:99:886,0,2425
3    195692482    rs139593489    G    A    76.96    QDFilter2    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.413;DB;DP=62;Dels=0.0;FS=2.432;HRun=0;HaplotypeScore=0.9999;MQ=50.42;MQ0=8;MQRankSum=-5.239;QD=1.24;ReadPosRankSum=0.329;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354559    GT:AD:DP:GQ:PL    0/1:41,20:62:99:107,0,1431
3    195701515    rs56400998    G    GT    251.71    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.098;DB;DP=24;FS=4.771;HRun=1;HaplotypeScore=60.3481;IndelType=I;MQ=19.68;MQ0=5;MQRankSum=-0.355;QD=6.62;ReadPosRankSum=-0.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538515    GT:AD:DP:GQ:PL    0/1:24,14:24:99:291,0,511
3    195702704    .    T    C    106.23    MQFilter40;QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.488;DP=117;Dels=0.0;FS=3.909;HRun=0;HaplotypeScore=0.8941;MQ=14.16;MQ0=79;MQRankSum=0.412;QD=0.91;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413474    GT:AD:DP:GQ:PL    0/1:101,16:117:99:136,0,512
3    195706503    rs112621821    T    C    159.15    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.132;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.95;MQ0=0;MQRankSum=-2.767;QD=6.12;ReadPosRankSum=0.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413474    GT:AD:DP:GQ:PL    0/1:16,10:26:99:189,0,465
3    195706589    rs146645407    T    C    43.95    MQFilter40;QDFilter2    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.365;DB;DP=50;Dels=0.0;FS=1.921;HRun=1;HaplotypeScore=0.9332;MQ=36.23;MQ0=8;MQRankSum=-1.281;QD=0.88;ReadPosRankSum=0.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413474    GT:AD:DP:GQ:PL    0/1:35,15:50:73.95:74,0,847
3    195708767    rs1064228    C    T    31.85    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.67;MQ0=0;MQRankSum=0.736;QD=10.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:62,0,31
3    195708778    rs1056758    C    A    40.30    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.67;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
3    195708880    rs2620600    C    T    351.77    MQFilter40    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.594;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=36.91;MQ0=1;MQRankSum=-0.255;QD=21.99;ReadPosRankSum=-1.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:2,14:16:28.60:382,0,29
3    195710971    rs4927836    G    T    98.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.016;DB;DP=32;Dels=0.0;FS=2.066;HRun=0;HaplotypeScore=0.0;MQ=44.46;MQ0=4;MQRankSum=-3.876;QD=3.08;ReadPosRankSum=0.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:16,16:32:99:129,0,587
3    195710989    rs2620604    G    A    175.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.636;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.39;MQ0=5;MQRankSum=-4.786;QD=4.4;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:20,20:40:99:206,0,579
3    195710993    rs4927692    A    G    258.51    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.52;DB;DP=44;Dels=0.0;FS=1.741;HRun=0;HaplotypeScore=0.0;MQ=41.62;MQ0=5;MQRankSum=-4.875;QD=5.88;ReadPosRankSum=-0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:20,24:44:99:289,0,664
3    195711182    .    A    C    326.40    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DP=60;Dels=0.0;FS=16.231;HRun=2;HaplotypeScore=0.9989;MQ=39.06;MQ0=5;MQRankSum=-3.202;QD=5.44;ReadPosRankSum=1.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:36,24:60:99:356,0,987
3    195711648    rs141342829    A    G    1369.77    MQFilter40    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.37;DB;DP=149;Dels=0.0;FS=3.166;HRun=0;HaplotypeScore=0.7887;MQ=36.0;MQ0=8;MQRankSum=-3.945;QD=9.19;ReadPosRankSum=-1.771;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:72,77:149:99:1400,0,1923
3    195711746    .    G    A    143.77    QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.502;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6383;MQ=42.78;MQ0=1;MQRankSum=-1.138;QD=1.56;ReadPosRankSum=0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427415    GT:AD:DP:GQ:PL    0/1:81,11:92:99:174,0,2712
3    195712478    .    G    A    107.60    MQFilter40;QDFilter2    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.049;DP=137;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5142;MQ=13.49;MQ0=64;MQRankSum=1.247;QD=0.79;ReadPosRankSum=-2.317;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354937    GT:AD:DP:GQ:PL    0/1:101,36:137:99:138,0,480
3    195713516    .    T    C    421.73    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.725;DP=140;Dels=0.0;FS=3.906;HRun=2;HaplotypeScore=0.0;MQ=15.23;MQ0=56;MQRankSum=2.219;QD=3.01;ReadPosRankSum=-1.189;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354937    GT:AD:DP:GQ:PL    0/1:80,60:140:99:452,0,750
3    195779155    rs41298097    C    T    276.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.7656;MQ=48.92;MQ0=0;QD=17.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463047    GT:AD:DP:GQ:PL    1/1:0,16:16:24.06:310,24,0
3    195782176    rs419068    C    T    338.07    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.2;MQ0=0;QD=14.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463356    GT:AD:DP:GQ:PL    1/1:0,22:23:44.90:371,45,0
3    195782177    rs366268    A    G    383.16    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.2;MQ0=0;QD=16.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463356    GT:AD:DP:GQ:PL    1/1:0,23:23:47.92:416,48,0
3    195782184    rs419059    C    T    614.16    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.71;MQ0=0;QD=27.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463356    GT:AD:DP:GQ:PL    1/1:0,22:22:51.13:647,51,0
3    195784997    rs3933    G    A    913.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464368    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:947,69,0
3    195789376    rs526860    C    T    190.11    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=18;Dels=0.0;FS=3.039;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.083;QD=10.56;ReadPosRankSum=-0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360110    GT:AD:DP:GQ:PL    0/1:11,7:18:99:220,0,334
3    195789428    rs507131    C    A    1035.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360110    GT:AD:DP:GQ:PL    1/1:0,31:31:78.26:1068,78,0
3    195796574    rs3827556    A    T    33.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421258    GT:AD:DP:GQ:PL    0/1:3,2:5:63.53:64,0,108
3    195798258    rs480760    T    C    1244.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421258    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1277,102,0
3    195804021    rs41300435    G    A    587.08    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.544;DB;DP=48;Dels=0.0;FS=4.222;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.23;ReadPosRankSum=-0.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360110    GT:AD:DP:GQ:PL    0/1:29,19:48:99:617,0,964
3    195925103    rs2280530    C    T    469.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497422    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:503,39,0
3    195925419    rs56699931    T    C    177.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=19.76;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296326    GT:AD:DP:GQ:PL    0/1:3,6:9:80.90:208,0,81
3    195935124    rs12494866    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488508    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
3    195935207    rs12497404    C    G    91.73    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.01;MQ0=0;MQRankSum=0.515;QD=4.83;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488508    GT:AD:DP:GQ:PL    0/1:12,7:19:99:122,0,391
3    195935466    rs73212122    T    G    210.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.533;QD=14.03;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296326    GT:AD:DP:GQ:PL    0/1:6,9:15:99:240,0,160
3    195937326    rs6795617    G    A    126.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCYT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441879    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
3    195937629    rs115997786    G    A    181.66    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.14;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCYT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441879    GT:AD:DP:GQ:PL    0/1:5,7:12:99:212,0,137
3    195937678    rs12718059    G    A    141.09    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=15.68;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCYT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441879    GT:AD:DP:GQ:PL    0/1:4,5:9:99:171,0,141
3    195937977    rs13079891    A    G    377.50    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.093;QD=16.41;ReadPosRankSum=0.899;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCYT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441879    GT:AD:DP:GQ:PL    0/1:10,13:23:99:407,0,278
3    195938177    rs1522394    A    G    330.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=26;Dels=0.0;FS=4.222;HRun=1;HaplotypeScore=0.9832;MQ=58.2;MQ0=0;MQRankSum=1.061;QD=12.7;ReadPosRankSum=0.136;SNPEFF_AMINO_ACID_CHANGE=L4;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195938041_195938266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296326    GT:AD:DP:GQ:PL    0/1:13,13:26:99:360,0,457
3    195941216    rs7642243    C    G    918.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=28.7;SNPEFF_AMINO_ACID_CHANGE=R172T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195941093_195941244;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCYT1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441879    GT:AD:DP:GQ:PL    1/1:0,31:31:78.22:951,78,0
3    195944531    rs13064065    G    A    163.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296327    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
3    195954299    rs73212134    G    A    40.30    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=8.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442203    GT:AD:DP:GQ:PL    0/1:1,4:5:32.73:70,0,33
3    195955203    rs78736929    T    C    197.40    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=54.85;MQ0=0;MQRankSum=0.925;QD=14.1;ReadPosRankSum=2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442203    GT:AD:DP:GQ:PL    0/1:5,9:14:90.52:227,0,91
3    195955209    rs72611185    T    C    205.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.393;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.044;QD=17.11;ReadPosRankSum=0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442203    GT:AD:DP:GQ:PL    0/1:3,9:12:18.16:235,0,18
3    195955272    rs12491227    G    A    69.57    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=1.517;QD=8.7;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442203    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,174
3    195955762    rs939885    G    A    897.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.193;DB;DP=67;Dels=0.0;FS=3.745;HRun=0;HaplotypeScore=1.7273;MQ=59.72;MQ0=0;MQRankSum=-0.872;QD=13.39;ReadPosRankSum=-0.757;SNPEFF_AMINO_ACID_CHANGE=V202I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195955680_195955791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296327    GT:AD:DP:GQ:PL    0/1:33,33:67:99:927,0,963
3    195956827    rs17852687    T    C    313.04    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.147;DB;DP=42;Dels=0.0;FS=1.268;HRun=0;HaplotypeScore=2.101;MQ=60.0;MQ0=0;MQRankSum=-1.588;QD=7.45;ReadPosRankSum=-1.267;SNPEFF_AMINO_ACID_CHANGE=L225;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_195956786_195956932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296327    GT:AD:DP:GQ:PL    0/1:28,14:42:99:343,0,846
3    195956970    rs67261052    C    T    168.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.17;DB;DP=21;Dels=0.0;FS=9.951;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.743;QD=8.04;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442203    GT:AD:DP:GQ:PL    0/1:14,7:21:99:199,0,378
3    195959837    rs61608982    G    A    430.82    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.623;QD=16.57;ReadPosRankSum=-0.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471430    GT:AD:DP:GQ:PL    0/1:11,15:26:99:461,0,367
3    195959859    rs56867360    C    T    454.30    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.486;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=1.819;QD=13.36;ReadPosRankSum=0.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471430    GT:AD:DP:GQ:PL    0/1:16,17:34:99:484,0,563
3    195959924    rs1476331    T    C    723.44    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=56;Dels=0.0;FS=5.541;HRun=3;HaplotypeScore=1.5253;MQ=59.59;MQ0=0;MQRankSum=0.534;QD=12.92;ReadPosRankSum=0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471430    GT:AD:DP:GQ:PL    0/1:30,26:56:99:753,0,1004
3    195960225    rs9343    A    G    294.08    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=29.41;ReadPosRankSum=-0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471430    GT:AD:DP:GQ:PL    0/1:1,9:10:11.13:324,0,11
3    195965509    rs3184886    T    C    369.93    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DB;DP=41;Dels=0.0;FS=1.481;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=1.615;QD=9.02;ReadPosRankSum=-0.897;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479732    GT:AD:DP:GQ:PL    0/1:25,16:41:99:400,0,742
3    195966258    rs1580820    G    A    119.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069257.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479732    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
3    196034138    rs67127834    A    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTEX1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325318    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
3    196050834    rs35643777    C    T    242.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.737;DB;DP=18;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.088;QD=13.49;ReadPosRankSum=1.501;SNPEFF_AMINO_ACID_CHANGE=V136I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196050420_196050868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TM4SF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454715    GT:AD:DP:GQ:PL    0/1:9,9:18:99:273,0,267
3    196051131    rs57405871    C    T    450.77    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=40;Dels=0.0;FS=4.696;HRun=0;HaplotypeScore=1.9958;MQ=60.0;MQ0=0;MQRankSum=1.264;QD=11.27;ReadPosRankSum=-1.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TM4SF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273695    GT:AD:DP:GQ:PL    0/1:22,18:40:99:481,0,696
3    196051403    rs2280526    A    G    37.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.31;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TM4SF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273695    GT:AD:DP:GQ:PL    0/1:3,3:6:67.83:68,0,109
3    196054086    rs12054137    C    T    78.43    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.61;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TM4SF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273695    GT:AD:DP:GQ:PL    0/1:1,3:4:23.21:108,0,23
3    196054439    rs6785339    T    G    590.75    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.389;DB;DP=38;Dels=0.0;FS=10.298;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.044;QD=15.55;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=Q8P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196054261_196054462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TM4SF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273695    GT:AD:DP:GQ:PL    0/1:20,18:38:99:621,0,654
3    196054488    rs6782336    A    G    196.35    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.63;MQ0=0;MQRankSum=0.529;QD=11.55;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TM4SF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273695    GT:AD:DP:GQ:PL    0/1:10,7:17:99:226,0,284
3    196082909    rs3832181    CAT    C    171.48    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=37.0764;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=1.031;QD=15.59;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428095    GT:AD:DP:GQ:PL    0/1:6,5:11:99:211,0,333
3    196096400    .    T    TA    173.38    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.865;DP=21;FS=0.0;HRun=10;HaplotypeScore=74.6696;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=8.26;ReadPosRankSum=-0.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296328    GT:AD:DP:GQ:PL    0/1:14,7:21:99:212,0,106
3    196096451    rs9860931    C    T    100.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.2;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296328    GT:AD:DP:GQ:PL    0/1:5,4:9:99:131,0,163
3    196118621    rs6583305    A    T    242.64    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=32;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.603;QD=7.58;ReadPosRankSum=0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413584    GT:AD:DP:GQ:PL    0/1:20,12:32:99:273,0,702
3    196118908    rs73213958    C    A    101.63    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;MQRankSum=0.956;QD=12.7;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413584    GT:AD:DP:GQ:PL    0/1:3,5:8:55.39:132,0,55
3    196159337    rs148097302    GT    G    74.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=25.5485;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=12.48;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428095    GT:AD:DP:GQ:PL    0/1:1,5:6:35.84:114,0,36
3    196198533    rs4916497    T    C    210.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437070    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
3    196199204    rs3796129    G    T    3693.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=P401Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196195654_196199643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF168;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318037    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3693,280,0
3    196210590    rs7643192    A    G    1516.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318037    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1549,126,0
3    196210808    rs7646174    T    C    2663.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318037    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2696,205,0
3    196210894    rs7646273    T    C    769.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318037    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:802,60,0
3    196215451    rs62798260    CA    C    425.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=11;HaplotypeScore=49.9289;IndelType=D;MQ=61.07;MQ0=0;QD=21.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318037    GT:AD:DP:GQ:PL    1/1:1,19:20:56.93:467,57,0
3    196215660    rs11185543    G    A    379.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318037    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:413,33,0
3    196294104    rs9842616    C    G    1328.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8499;MQ=60.0;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429115    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1362,105,0
3    196386964    rs1798631    C    G    516.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=A150;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196386623_196388875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328557    GT:AD:DP:GQ:PL    1/1:0,16:16:45.10:550,45,0
3    196434364    rs67479689    AGTCTG    A    1757.20    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=6.305;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=302.5031;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=-0.161;QD=31.38;ReadPosRankSum=0.959;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426755    GT:AD:DP:GQ:PL    0/1:25,31:56:99:1796,0,2024
3    196443803    rs1906044    T    C    170.89    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.455;QD=7.77;ReadPosRankSum=1.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296333    GT:AD:DP:GQ:PL    0/1:15,7:22:99:201,0,438
3    196443947    rs35314545    G    A    83.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.92;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296333    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:114,0,31
3    196455682    rs71323744    G    A    1172.30    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.649;DB;DP=75;Dels=0.0;FS=1.367;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=1.384;QD=15.63;ReadPosRankSum=0.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421265    GT:AD:DP:GQ:PL    0/1:36,39:75:99:1202,0,1240
3    196460680    rs34830136    C    T    510.81    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=49;Dels=0.0;FS=8.577;HRun=1;HaplotypeScore=0.9665;MQ=59.53;MQ0=0;MQRankSum=0.173;QD=10.42;ReadPosRankSum=-0.926;SNPEFF_AMINO_ACID_CHANGE=T138;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196460630_196461160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541663    GT:AD:DP:GQ:PL    0/1:29,20:49:99:541,0,976
3    196509425    .    T    G    100.56    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.346;DP=37;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.1567;MQ=58.74;MQ0=0;MQRankSum=-0.727;QD=2.72;ReadPosRankSum=4.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327134    GT:AD:DP:GQ:PL    0/1:14,23:37:99:131,0,349
3    196533671    rs35013100    G    A    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.59;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327134    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,107
3    196541252    rs13078303    C    T    564.58    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.632;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.721;QD=13.13;ReadPosRankSum=-0.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488224    GT:AD:DP:GQ:PL    0/1:24,19:43:99:595,0,815
3    196541580    rs11185455    G    A    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488224    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
3    196547446    rs2084382    G    C    420.89    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.624;DB;DP=35;Dels=0.0;FS=1.713;HRun=0;HaplotypeScore=0.734;MQ=59.21;MQ0=0;MQRankSum=-1.283;QD=12.03;ReadPosRankSum=0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327134    GT:AD:DP:GQ:PL    0/1:19,16:35:99:451,0,578
3    196547538    rs2166799    G    A    72.17    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=6.56;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327134    GT:AD:DP:GQ:PL    0/1:7,4:11:99:102,0,255
3    196553867    rs2084385    A    G    32.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327134    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:64,6,0
3    196554020    rs2084386    C    T    1263.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327134    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1296,93,0
3    196555422    rs3659    C    G    191.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.19;MQ0=0;MQRankSum=-0.573;QD=21.26;ReadPosRankSum=-1.001;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327134    GT:AD:DP:GQ:PL    0/1:3,6:9:94.58:221,0,95
3    196613075    rs34533379    C    T    445.50    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.16;QD=12.04;ReadPosRankSum=0.513;SNPEFF_AMINO_ACID_CHANGE=D341;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196612022_196613565;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323460    GT:AD:DP:GQ:PL    0/1:21,16:37:99:475,0,651
3    196627088    rs9825635    A    G    69.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.322;QD=8.7;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323460    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,180
3    196627335    rs6764463    T    C    124.54    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.566;DB;DP=20;Dels=0.0;FS=2.865;HRun=0;HaplotypeScore=0.9996;MQ=58.84;MQ0=0;MQRankSum=0.872;QD=6.23;ReadPosRankSum=-0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323460    GT:AD:DP:GQ:PL    0/1:13,7:20:99:155,0,441
3    196627356    rs9810317    C    T    111.32    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.053;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.264;QD=6.55;ReadPosRankSum=0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323460    GT:AD:DP:GQ:PL    0/1:12,5:17:99:141,0,432
3    196627361    rs6772870    G    A    122.79    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.492;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.227;QD=7.67;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323460    GT:AD:DP:GQ:PL    0/1:11,5:16:99:153,0,419
3    196654536    rs2054200    G    A    32.67    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=42.94;MQ0=0;MQRankSum=0.0;QD=2.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323460    GT:AD:DP:GQ:PL    0/1:6,5:11:43.09:63,0,43
3    196656772    rs1602    G    A    33.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323460    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
3    196657670    rs71867734    CT    C    485.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=9;HaplotypeScore=56.6457;IndelType=D;MQ=60.98;MQ0=0;QD=22.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321256    GT:AD:DP:GQ:PL    1/1:1,20:22:59.07:528,59,0
3    196665864    rs556502    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455953    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    196666059    rs553783    A    G    795.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455953    GT:AD:DP:GQ:PL    1/1:0,26:26:63.20:828,63,0
3    196674259    rs61179255    G    A    478.55    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=38;Dels=0.0;FS=1.309;HRun=0;HaplotypeScore=0.8321;MQ=59.39;MQ0=0;MQRankSum=-0.111;QD=12.59;ReadPosRankSum=-0.875;SNPEFF_AMINO_ACID_CHANGE=T503;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196673214_196675556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412723    GT:AD:DP:GQ:PL    0/1:18,20:38:99:509,0,540
3    196674749    rs4916589    C    T    765.78    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=40;Dels=0.0;FS=12.284;HRun=0;HaplotypeScore=2.2312;MQ=58.84;MQ0=0;MQRankSum=0.123;QD=19.14;ReadPosRankSum=-0.523;SNPEFF_AMINO_ACID_CHANGE=R340Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196673214_196675556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412723    GT:AD:DP:GQ:PL    0/1:14,25:40:99:796,0,367
3    196674879    rs12636891    A    G    954.38    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=70;Dels=0.0;FS=4.696;HRun=1;HaplotypeScore=1.8533;MQ=59.01;MQ0=0;MQRankSum=-0.066;QD=13.63;ReadPosRankSum=-0.162;SNPEFF_AMINO_ACID_CHANGE=L297;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196673214_196675556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412723    GT:AD:DP:GQ:PL    0/1:36,34:70:99:984,0,969
3    196674916    rs1147240    A    C    764.09    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.801;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.44;QD=11.94;ReadPosRankSum=0.268;SNPEFF_AMINO_ACID_CHANGE=A284;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196673214_196675556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412723    GT:AD:DP:GQ:PL    0/1:30,34:64:99:794,0,906
3    196674972    rs574365    C    T    157.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=3.93;SNPEFF_AMINO_ACID_CHANGE=A266T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_196673214_196675556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412723    GT:AD:DP:GQ:PL    1/1:0,40:40:18.03:190,18,0
3    196749798    rs2288766    T    G    1226.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=28.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MFI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439320    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1259,102,0
3    196750016    rs2288765    A    G    543.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;DB;DP=23;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=23.64;ReadPosRankSum=-0.413;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MFI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439320    GT:AD:DP:GQ:PL    1/1:1,21:23:9.40:576,9,0
3    196750841    rs2280294    C    A    310.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MFI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473501    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:343,27,0
3    196751474    rs2280296    C    T    214.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MFI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473501    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:247,18,0
3    196753355    rs4916598    T    C    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MFI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296350    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
3    196754819    rs2276788    C    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MFI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296350    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
3    196771245    rs4916600    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392382    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
3    196803647    rs12632559    T    C    127.65    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=9.12;ReadPosRankSum=0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392381    GT:AD:DP:GQ:PL    0/1:9,5:14:99:158,0,316
3    196831583    rs1812982    C    A    170.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314062    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:203,18,0
3    196846437    rs6776073    C    T    467.67    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=3.52;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=0.244;QD=15.59;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314062    GT:AD:DP:GQ:PL    0/1:13,17:30:99:498,0,305
3    196869688    rs7628652    A    G    2085.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.98;MQ=59.28;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314062    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2119,166,0
3    196876600    rs73210523    G    A    516.45    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=61;Dels=0.0;FS=5.798;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=8.47;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392380    GT:AD:DP:GQ:PL    0/1:40,21:61:99:546,0,1192
3    197023445    rs3852013    C    A    147.70    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.266;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.156;QD=8.69;ReadPosRankSum=0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314062    GT:AD:DP:GQ:PL    0/1:11,6:17:99:178,0,336
3    197239266    rs9325394    C    G    98.61    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.96;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432819    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,173
3    197349339    .    G    A    339.61    MQFilter40    AC=2;AF=1.00;AN=2;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.77;MQ0=4;QD=18.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC024560.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414207    GT:AD:DP:GQ:PL    1/1:4,14:18:39.04:373,39,0
3    197362103    rs28434055    G    T    222.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.6;MQ0=2;QD=22.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-496H1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507981    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:256,21,0
3    197362179    rs11915811    T    C    94.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.88;MQ0=3;QD=13.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-496H1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507981    GT:AD:DP:GQ:PL    1/1:1,6:7:12.03:127,12,0
3    197482760    rs13068986    C    G    4822.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=49.73;MQ0=12;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYTTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241502    GT:AD:DP:GQ:PL    1/1:0,150:150:99:4823,367,0
3    197483279    rs6794391    A    G    1317.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYTTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241502    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1350,102,0
3    197495334    rs3205525    G    A    1341.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.44;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=R20H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_197495310_197495458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYTTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424384    GT:AD:DP:GQ:PL    1/1:0,40:41:99:1375,102,0
3    197496984    rs1708460    A    G    539.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYTTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241502    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:573,42,0
3    197544201    rs1273552    A    G    242.64    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.7131;MQ=39.64;MQ0=0;QD=9.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    1/1:0,25:25:27.03:276,27,0
3    197544211    .    G    GTATTT    1690.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DP=21;FS=0.0;HRun=0;HaplotypeScore=242.5172;IndelType=I;MQ=32.46;MQ0=0;MQRankSum=0.743;QD=80.5;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    0/1:3,18:21:3.70:1729,0,4
3    197544217    .    C    G    187.24    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.68;MQ0=0;MQRankSum=-0.193;QD=10.4;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    1/1:1,17:18:24.01:220,24,0
3    197544224    .    T    C    123.16    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.63;MQ0=0;MQRankSum=0.29;QD=8.8;ReadPosRankSum=-1.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    1/1:1,13:14:17.99:156,18,0
3    197566084    rs4857594    G    A    173.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.46;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    0/1:6,6:12:99:204,0,213
3    197574248    rs73089359    T    G    871.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.966;DB;DP=70;Dels=0.0;FS=1.139;HRun=1;HaplotypeScore=1.7356;MQ=59.01;MQ0=0;MQRankSum=-0.642;QD=12.45;ReadPosRankSum=1.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    0/1:35,35:70:99:901,0,1043
3    197574936    rs2306439    G    C    240.05    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.96;MQ0=0;MQRankSum=0.933;QD=13.34;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    0/1:10,8:18:99:270,0,351
3    197574960    rs77727730    G    A    279.52    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.299;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.203;QD=16.44;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    0/1:8,9:17:99:310,0,279
3    197577222    .    CT    C    53.76    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DP=19;FS=0.0;HRun=17;HaplotypeScore=135.7121;IndelType=D;MQ=46.93;MQ0=0;MQRankSum=1.588;QD=2.15;ReadPosRankSum=-0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494069    GT:AD:DP:GQ:PL    0/1:11,11:19:92.79:93,0,112
3    197579466    rs36078463    C    T    1908.15    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.989;DB;DP=132;Dels=0.0;FS=5.415;HRun=0;HaplotypeScore=0.9469;MQ=59.65;MQ0=0;MQRankSum=1.994;QD=14.46;ReadPosRankSum=0.091;SNPEFF_AMINO_ACID_CHANGE=P117L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_197579432_197579491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536618    GT:AD:DP:GQ:PL    0/1:65,67:132:99:1938,0,1549
3    197581147    rs9863587    A    G    248.29    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=13.79;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334859    GT:AD:DP:GQ:PL    0/1:10,8:18:99:278,0,319
3    197597194    rs11185486    A    G    519.36    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.169;DB;DP=49;Dels=0.0;FS=1.746;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.548;QD=10.6;ReadPosRankSum=-0.316;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461674    GT:AD:DP:GQ:PL    0/1:29,20:49:99:549,0,977
3    197639381    rs9809736    A    G    333.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.733;QD=16.67;ReadPosRankSum=0.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453254    GT:AD:DP:GQ:PL    0/1:8,12:20:99:363,0,262
3    197659160    rs67877771    C    G    695.98    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=3.668;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.042;QD=17.85;ReadPosRankSum=-0.552;SNPEFF_AMINO_ACID_CHANGE=D158H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_197659045_197659173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416896    GT:AD:DP:GQ:PL    0/1:17,22:39:99:726,0,485
3    197665599    rs9880989    G    T    1619.44    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.316;DB;DP=136;Dels=0.0;FS=2.212;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=0.42;QD=11.91;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=A112D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_3_197665419_197665651;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265239    GT:AD:DP:GQ:PL    0/1:78,58:136:99:1649,0,2593
3    197671027    rs3749255    C    T    329.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=20.59;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265239    GT:AD:DP:GQ:PL    0/1:6,10:16:99:359,0,155
3    197672589    rs148926939    TA    T    123.83    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=15;FS=0.0;HRun=1;HaplotypeScore=39.8335;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=8.26;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265239    GT:AD:DP:GQ:PL    0/1:10,5:15:99:163,0,435
3    197682442    rs115750860    T    C    66.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.33;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493624    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:97,0,67
3    197702168    rs80222900    T    C    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330198    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,111
3    197710959    rs77196201    T    C    401.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.923;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=15.43;ReadPosRankSum=1.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419117    GT:AD:DP:GQ:PL    0/1:13,13:26:99:431,0,426
3    197712532    rs77224512    G    A    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.36;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482837    GT:AD:DP:GQ:PL    0/1:2,2:4:63.55:71,0,64
3    197717568    rs74683446    T    C    708.71    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.858;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.08;MQ0=0;MQRankSum=-0.919;QD=11.25;ReadPosRankSum=-1.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330198    GT:AD:DP:GQ:PL    0/1:33,30:63:99:739,0,1047
3    197717643    .    A    ATATT    1127.60    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DP=32;FS=0.0;HRun=0;HaplotypeScore=142.0015;IndelType=I;MQ=50.99;MQ0=0;MQRankSum=-2.826;QD=35.24;ReadPosRankSum=0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330198    GT:AD:DP:GQ:PL    0/1:20,12:32:99:1167,0,863
3    197717701    rs79447348    G    A    65.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.3;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330198    GT:AD:DP:GQ:PL    0/1:6,3:9:95.69:96,0,224
3    197762623    rs7640149    G    A    158.32    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=11.31;ReadPosRankSum=-0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330198    GT:AD:DP:GQ:PL    0/1:8,6:14:99:188,0,292
3    197762958    rs6764197    A    G    354.81    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.577;QD=18.67;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330198    GT:AD:DP:GQ:PL    0/1:6,13:19:99:385,0,162
3    197785515    rs73891825    G    T    1098.19    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DB;DP=86;Dels=0.0;FS=0.872;HRun=1;HaplotypeScore=0.9867;MQ=59.46;MQ0=0;MQRankSum=1.1;QD=12.77;ReadPosRankSum=1.224;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073135.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440713    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1128,0,1567
3    197785811    rs73891826    G    A    2548.18    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=5.225;DB;DP=187;Dels=0.0;FS=11.233;HRun=0;HaplotypeScore=4.7703;MQ=59.88;MQ0=0;MQRankSum=-0.359;QD=13.63;ReadPosRankSum=0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073135.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440713    GT:AD:DP:GQ:PL    0/1:98,88:187:99:2578,0,2829
3    197786154    rs36073259    T    C    309.83    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=14.75;ReadPosRankSum=0.178;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073135.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335478    GT:AD:DP:GQ:PL    0/1:9,12:21:99:340,0,276
3    197803804    rs112000284    CT    C    2202.92    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=8.044;DB;DP=141;FS=0.0;HRun=1;HaplotypeScore=431.9047;IndelType=D;MQ=60.14;MQ0=0;MQRankSum=1.747;QD=15.62;ReadPosRankSum=1.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073135.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335478    GT:AD:DP:GQ:PL    0/1:76,65:141:99:2242,0,3158
3    197803886    rs60463220    G    A    1273.85    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.065;DB;DP=84;Dels=0.0;FS=1.998;HRun=0;HaplotypeScore=0.8941;MQ=60.13;MQ0=0;MQRankSum=-0.787;QD=15.16;ReadPosRankSum=0.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073135.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335478    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1304,0,1460
3    197804058    rs58082632    G    A    1723.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.607;DB;DP=114;Dels=0.0;FS=2.531;HRun=0;HaplotypeScore=1.9981;MQ=59.39;MQ0=0;MQRankSum=1.695;QD=15.12;ReadPosRankSum=0.433;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073135.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335478    GT:AD:DP:GQ:PL    0/1:57,57:114:99:1753,0,1569
3    197804128    rs61754923    G    A    2164.08    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=4.449;DB;DP=151;Dels=0.0;FS=2.037;HRun=0;HaplotypeScore=3.3107;MQ=59.54;MQ0=0;MQRankSum=-0.595;QD=14.33;ReadPosRankSum=-0.181;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073135.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335478    GT:AD:DP:GQ:PL    0/1:80,71:151:99:2194,0,2198
3    197807241    rs13062943    G    C    89.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=9.92;ReadPosRankSum=0.248;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073135.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335478    GT:AD:DP:GQ:PL    0/1:3,6:9:64.07:119,0,64
4    53428    rs2859214    G    A    6374.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=195;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0659;MQ=56.35;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509152    GT:AD:DP:GQ:PL    1/1:1,194:195:99:6375,505,0
4    53498    rs2780407    A    C    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.25;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509152    GT:AD:DP:GQ:PL    1/1:0,88:89:99:3268,259,0
4    53617    .    G    A    35.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=5.13;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509152    GT:AD:DP:GQ:PL    0/1:4,3:7:65.90:66,0,125
4    59299    rs2780402    C    G    1859.31    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.019;DB;DP=250;DS;Dels=0.0;FS=0.601;HRun=0;HaplotypeScore=0.0;MQ=59.91;MQ0=0;MQRankSum=-0.416;QD=7.44;ReadPosRankSum=-0.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509152    GT:AD:DP:GQ:PL    0/1:169,81:250:99:1889,0,5874
4    59566    rs6856925    C    A    421.11    PASS    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=150;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2054;MQ=59.54;MQ0=0;MQRankSum=-0.026;QD=2.81;ReadPosRankSum=0.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509152    GT:AD:DP:GQ:PL    0/1:127,23:150:99:451,0,4606
4    59571    rs6835149    A    T    365.99    PASS    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.29;DB;DP=147;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9951;MQ=59.53;MQ0=0;MQRankSum=-1.295;QD=2.49;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509152    GT:AD:DP:GQ:PL    0/1:125,22:147:99:396,0,4603
4    59656    rs2780401    G    T    348.93    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.562;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.33;MQ0=0;MQRankSum=-1.049;QD=12.46;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509152    GT:AD:DP:GQ:PL    0/1:15,12:28:99:379,0,521
4    65108    rs77210260    G    A    185.57    QDFilter2    AB=0.883;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DB;DP=162;DS;Dels=0.0;FS=1.557;HRun=0;HaplotypeScore=3.9985;MQ=59.72;MQ0=0;MQRankSum=-0.5;QD=1.15;ReadPosRankSum=-0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502981    GT:AD:DP:GQ:PL    0/1:143,19:162:99:216,0,5142
4    65136    rs3884777    T    G    548.78    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.999;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=59.78;MQ0=0;MQRankSum=0.698;QD=5.28;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502981    GT:AD:DP:GQ:PL    0/1:80,24:104:99:579,0,2932
4    65239    rs2780452    G    A    384.03    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=1.868;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.557;QD=27.43;ReadPosRankSum=1.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502981    GT:AD:DP:GQ:PL    0/1:3,11:14:64.04:414,0,64
4    85995    rs61336127    C    CA    1005.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=2;HaplotypeScore=353.1778;IndelType=I;MQ=40.45;MQ0=0;QD=34.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:4,25:28:76.68:1047,77,0
4    86016    rs57253237    G    GC    670.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=321.5071;IndelType=I;MQ=34.44;MQ0=0;QD=41.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:2,14:16:48.16:712,48,0
4    86031    rs59265003    CA    C    366.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=422.9544;IndelType=D;MQ=29.0;MQ0=0;QD=22.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:5,11:16:33.10:408,33,0
4    86034    rs57594632    TC    T    366.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=299.1358;IndelType=D;MQ=29.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:408,33,0
4    86040    rs17853557    G    T    151.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=10.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:0,14:14:20.97:184,21,0
4    86042    rs17857099    A    G    117.98    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.199;DB;DP=19;Dels=0.0;FS=3.039;HRun=0;HaplotypeScore=0.0;MQ=39.59;MQ0=0;MQRankSum=-1.661;QD=6.21;ReadPosRankSum=2.192;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:2,17:19:15.02:151,15,0
4    86101    rs112636666    G    GC    1981.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=1;HaplotypeScore=314.6896;IndelType=I;MQ=48.45;MQ0=0;QD=44.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:1,44:45:99:2023,135,0
4    86738    rs2353625    A    G    2072.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.366;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2106,162,0
4    87277    rs2006764    G    C    3212.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6472;MQ=60.08;MQ0=0;QD=36.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3245,241,0
4    87313    rs76861827    G    GA    4102.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;FS=0.0;HRun=1;HaplotypeScore=431.3474;IndelType=I;MQ=60.91;MQ0=0;QD=44.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF595;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339368    GT:AD:DP:GQ:PL    1/1:1,92:93:99:4103,277,0
4    135694    rs12504142    G    A    323.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=35.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ZNF718;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510175    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:356,27,0
4    155411    rs142742436    A    T    953.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.551;DB;DP=56;Dels=0.0;FS=2.422;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.627;QD=17.03;ReadPosRankSum=-0.833;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ZNF718;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400172    GT:AD:DP:GQ:PL    0/1:22,33:56:99:984,0,722
4    331693    rs5855672    G    GC    1307.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=1;HaplotypeScore=79.8191;IndelType=I;MQ=59.61;MQ0=0;QD=42.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366506    GT:AD:DP:GQ:PL    1/1:0,31:31:90.30:1350,90,0
4    337537    .    AG    A    42.39    QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=4.874;DP=67;FS=5.402;HRun=1;HaplotypeScore=768.0341;IndelType=D;MQ=39.19;MQ0=0;MQRankSum=-5.072;QD=0.53;ReadPosRankSum=-3.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240499    GT:AD:DP:GQ:PL    0/1:69,11:67:81.42:81,0,405
4    367169    rs145966198    G    A    40.96    QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=0.242;DB;DP=117;Dels=0.0;FS=2.755;HRun=2;HaplotypeScore=3.6845;MQ=56.75;MQ0=0;MQRankSum=-5.945;QD=0.35;ReadPosRankSum=-2.191;SNPEFF_AMINO_ACID_CHANGE=E315K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_366453_369047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240499    GT:AD:DP:GQ:PL    0/1:103,14:117:70.95:71,0,3501
4    367199    rs114931928    A    T    222.90    QDFilter2;SnpCluster    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=0.708;DB;DP=118;Dels=0.0;FS=6.465;HRun=0;HaplotypeScore=0.9947;MQ=54.23;MQ0=0;MQRankSum=-7.484;QD=1.89;ReadPosRankSum=2.836;SNPEFF_AMINO_ACID_CHANGE=T325S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_366453_369047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240499    GT:AD:DP:GQ:PL    0/1:93,25:118:99:253,0,3013
4    367201    rs111394409    C    A    236.39    SnpCluster    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.268;DB;DP=117;Dels=0.0;FS=6.478;HRun=0;HaplotypeScore=0.9947;MQ=54.18;MQ0=0;MQRankSum=-7.442;QD=2.02;ReadPosRankSum=3.122;SNPEFF_AMINO_ACID_CHANGE=T325;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_366453_369047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF141;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240499    GT:AD:DP:GQ:PL    0/1:92,25:117:99:266,0,3012
4    367206    rs113884485    C    G    383.41    SnpCluster    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=2.145;DB;DP=120;Dels=0.0;FS=10.119;HRun=0;HaplotypeScore=0.0;MQ=54.33;MQ0=0;MQRankSum=-7.522;QD=3.2;ReadPosRankSum=3.961;SNPEFF_AMINO_ACID_CHANGE=T327S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_366453_369047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240499    GT:AD:DP:GQ:PL    0/1:95,25:120:99:413,0,3130
4    521068    rs7697650    A    T    187.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503111    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:221,18,0
4    648643    rs10902758    G    A    1618.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.51;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=V320I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_648613_648677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255622    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1652,126,0
4    651287    rs113246945    C    T    299.41    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=54.32;MQ0=0;MQRankSum=-0.85;QD=9.36;ReadPosRankSum=1.008;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465426    GT:AD:DP:GQ:PL    0/1:17,15:32:99:329,0,365
4    651290    .    C    CA    590.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.314;DP=30;FS=0.0;HRun=0;HaplotypeScore=197.4377;IndelType=I;MQ=53.92;MQ0=0;MQRankSum=-0.332;QD=19.69;ReadPosRankSum=1.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465426    GT:AD:DP:GQ:PL    0/1:15,15:30:99:630,0,503
4    651299    .    A    T    276.80    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=53.03;MQ0=0;MQRankSum=-0.077;QD=9.89;ReadPosRankSum=-1.003;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465426    GT:AD:DP:GQ:PL    0/1:12,14:28:99:307,0,389
4    651323    .    A    T    87.81    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=54.65;MQ0=0;MQRankSum=1.12;QD=4.88;ReadPosRankSum=-2.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465426    GT:AD:DP:GQ:PL    0/1:10,7:18:99:118,0,299
4    663908    rs28675771    A    G    3628.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0995;MQ=58.56;MQ0=0;QD=32.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATP5I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304312    GT:AD:DP:GQ:PL    1/1:0,112:113:99:3629,277,0
4    755025    rs2242233    G    A    197.44    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=13.16;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCGF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362003    GT:AD:DP:GQ:PL    0/1:7,8:15:99:227,0,211
4    759640    rs6829951    G    A    150.46    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.72;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCGF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488032    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,109
4    759709    rs6810428    A    G    285.45    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.093;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=12.41;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCGF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488032    GT:AD:DP:GQ:PL    0/1:12,11:23:99:315,0,430
4    759733    rs6816483    T    C    925.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCGF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488032    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:959,69,0
4    779610    rs2242236    T    C    573.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504062    GT:AD:DP:GQ:PL    1/1:0,17:18:48.15:606,48,0
4    779670    rs6816868    C    T    526.33    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.686;DB;DP=41;Dels=0.0;FS=3.317;HRun=3;HaplotypeScore=0.0;MQ=52.97;MQ0=0;MQRankSum=2.235;QD=12.84;ReadPosRankSum=1.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504062    GT:AD:DP:GQ:PL    0/1:22,19:41:99:556,0,564
4    779796    rs147679030    AGCGGCCGCGT    A    1146.73    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=4.796;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=320.9706;IndelType=D;MQ=47.03;MQ0=0;MQRankSum=-4.078;QD=33.73;ReadPosRankSum=0.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504062    GT:AD:DP:GQ:PL    0/1:16,18:34:99:1186,0,2150
4    779899    rs11248041    G    C    120.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=52.86;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504062    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:153,12,0
4    780286    rs10794536    C    G    235.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504062    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:269,21,0
4    780549    rs13128363    C    T    47.96    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=4.36;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304062    GT:AD:DP:GQ:PL    0/1:8,3:11:77.95:78,0,198
4    786401    rs2306251    T    C    515.88    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.498;DB;DP=42;Dels=0.0;FS=1.368;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=-0.29;QD=12.28;ReadPosRankSum=-2.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304062    GT:AD:DP:GQ:PL    0/1:22,20:42:99:546,0,680
4    786508    rs2306250    T    C    271.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304062    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:305,24,0
4    818440    rs2276906    G    A    203.85    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.868;QD=13.59;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304062    GT:AD:DP:GQ:PL    0/1:8,7:15:99:234,0,280
4    843508    rs1134921    C    T    46.79    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.382;QD=4.25;ReadPosRankSum=1.106;SNPEFF_AMINO_ACID_CHANGE=D1218N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_843066_843562;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511163    GT:AD:DP:GQ:PL    0/1:8,3:11:76.78:77,0,243
4    845772    rs10031922    T    C    75.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314167    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:107,9,0
4    858691    rs2306249    A    G    67.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314167    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
4    858874    rs3214922    T    TC    455.72    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=16;FS=6.41;HRun=1;HaplotypeScore=66.4424;IndelType=I;MQ=58.55;MQ0=0;MQRankSum=-0.505;QD=28.48;ReadPosRankSum=-1.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314167    GT:AD:DP:GQ:PL    0/1:5,11:16:71.78:495,0,72
4    858941    rs1026738    T    C    681.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=A1045;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_858910_859032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314167    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:715,57,0
4    860146    rs2306248    A    G    166.78    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.183;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.331;QD=10.42;ReadPosRankSum=0.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314167    GT:AD:DP:GQ:PL    0/1:9,7:16:99:197,0,278
4    860192    rs1064207    A    G    127.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.465;QD=6.36;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=S1001;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_860152_860322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314167    GT:AD:DP:GQ:PL    0/1:12,8:20:99:157,0,289
4    871624    rs1564281    C    T    114.03    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=16.29;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504947    GT:AD:DP:GQ:PL    0/1:2,5:7:55.87:144,0,56
4    871675    rs1564280    A    G    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504947    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:67,0,70
4    877709    rs3736083    T    C    35.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.13;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504435    GT:AD:DP:GQ:PL    0/1:4,3:7:65.93:66,0,151
4    882849    rs9328760    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505819    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    890172    .    T    G    39.78    MQFilter40    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DP=13;Dels=0.0;FS=5.441;HRun=2;HaplotypeScore=2.995;MQ=32.45;MQ0=0;MQRankSum=-1.271;QD=3.06;ReadPosRankSum=1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502656    GT:AD:DP:GQ:PL    0/1:3,10:13:54.54:70,0,55
4    906647    rs2279178    A    G    172.81    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.752;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=11.52;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314167    GT:AD:DP:GQ:PL    0/1:8,7:15:99:203,0,232
4    942006    rs2290403    G    A    242.78    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=4.15;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=18.68;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264771    GT:AD:DP:GQ:PL    0/1:5,8:13:99:273,0,155
4    945225    rs2290404    A    G    183.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=20.4;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504505    GT:AD:DP:GQ:PL    0/1:3,6:9:89.93:214,0,90
4    946226    rs11552301    T    C    331.10    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.601;DB;DP=46;Dels=0.0;FS=2.867;HRun=0;HaplotypeScore=1.7884;MQ=52.38;MQ0=0;MQRankSum=0.236;QD=7.2;ReadPosRankSum=0.656;SNPEFF_AMINO_ACID_CHANGE=I137;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_946155_946238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM175;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514453    GT:AD:DP:GQ:PL    0/1:29,16:46:99:361,0,856
4    946262    rs5855681    CTGTG    C    201.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=154.4583;IndelType=D;MQ=47.99;MQ0=0;QD=8.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502513    GT:AD:DP:GQ:PL    1/1:16,7:24:18.05:243,18,0
4    946974    rs2290405    G    A    132.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=9.46;ReadPosRankSum=0.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502513    GT:AD:DP:GQ:PL    0/1:8,6:14:99:162,0,262
4    954247    rs3733345    G    T    81.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502309    GT:AD:DP:GQ:PL    0/1:1,3:4:23.21:111,0,23
4    954275    rs3733346    T    C    68.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=9.8;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502309    GT:AD:DP:GQ:PL    0/1:4,3:7:98.61:99,0,135
4    954277    rs3733347    T    C    76.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.98;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502309    GT:AD:DP:GQ:PL    0/1:4,3:7:99:107,0,136
4    954311    rs3733349    C    T    133.99    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.31;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502309    GT:AD:DP:GQ:PL    0/1:8,5:13:99:164,0,294
4    960081    rs4690324    G    A    36.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.05;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510286    GT:AD:DP:GQ:PL    0/1:2,2:4:59.29:66,0,59
4    960542    rs35117553    T    G    104.52    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=2.148;QD=9.5;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=R454;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_960536_960590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273814    GT:AD:DP:GQ:PL    0/1:5,6:11:99:135,0,103
4    960713    rs4690196    G    A    78.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.69;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510286    GT:AD:DP:GQ:PL    0/1:2,3:5:60.51:108,0,61
4    961191    rs1377587    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=12.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510286    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:80,6,0
4    961373    rs1377586    G    A    349.32    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.405;DB;DP=22;Dels=0.0;FS=4.775;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.364;QD=15.88;ReadPosRankSum=0.774;SNPEFF_AMINO_ACID_CHANGE=V317;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_961337_961437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273814    GT:AD:DP:GQ:PL    0/1:6,16:22:99:379,0,183
4    982852    rs3796621    G    A    154.81    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.8;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=A625;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_981445_984150;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361661    GT:AD:DP:GQ:PL    0/1:1,5:6:23.17:185,0,23
4    983060    rs3796622    T    C    185.58    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=16;Dels=0.0;FS=2.331;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=11.6;ReadPosRankSum=-1.059;SNPEFF_AMINO_ACID_CHANGE=Q556R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_981445_984150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361661    GT:AD:DP:GQ:PL    0/1:7,9:16:99:216,0,195
4    994452    rs3755954    C    T    519.95    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.615;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.638;QD=11.82;ReadPosRankSum=-0.978;SNPEFF_AMINO_ACID_CHANGE=L118;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_994400_994485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDUA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247933    GT:AD:DP:GQ:PL    0/1:24,20:44:99:550,0,712
4    1006076    rs35719905    T    TA    336.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=17.6831;IndelType=I;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FGFRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512562    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:378,27,0
4    1006200    rs34627176    G    A    124.78    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.437;QD=9.6;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FGFRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512562    GT:AD:DP:GQ:PL    0/1:8,5:13:99:155,0,266
4    1018705    rs4647930    C    A    380.74    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=41;Dels=0.0;FS=4.947;HRun=1;HaplotypeScore=2.4888;MQ=59.44;MQ0=0;MQRankSum=1.256;QD=9.29;ReadPosRankSum=-1.111;SNPEFF_AMINO_ACID_CHANGE=P332Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1018693_1018994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FGFRL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542622    GT:AD:DP:GQ:PL    0/1:25,16:41:99:411,0,725
4    1067249    rs2290409    T    C    231.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382968    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:264,21,0
4    1067267    rs2290408    G    T    251.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382968    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
4    1075271    rs2290407    C    T    974.72    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=3.013;DB;DP=60;Dels=0.0;FS=3.711;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=16.25;ReadPosRankSum=1.374;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512552    GT:AD:DP:GQ:PL    0/1:29,31:60:99:1005,0,780
4    1084723    rs658846    G    C    414.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333673    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:447,33,0
4    1087168    rs113644850    A    AAT    376.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=51.1364;IndelType=I;MQ=45.15;MQ0=0;QD=47.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454487    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:419,24,0
4    1087265    rs1670534    T    C    438.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.38;MQ0=0;QD=29.22;SNPEFF_AMINO_ACID_CHANGE=I262V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1087096_1087802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333673    GT:AD:DP:GQ:PL    1/1:0,15:15:42.10:471,42,0
4    1087327    rs67353138    G    GCTGCCCAGGCTGGAGCCAGCC    1747.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=152.1188;IndelType=I;MQ=46.05;MQ0=0;QD=194.12;SNPEFF_AMINO_ACID_CHANGE=-241GWLQPGQ;SNPEFF_CODON_CHANGE=-/GGCTGGCTCCAGCCTGGGCAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_4_1087096_1087802;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333673    GT:AD:DP:GQ:PL    1/1:0,2:9:24.08:1789,24,0
4    1087328    .    A    C    38.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.05;MQ0=0;MQRankSum=1.589;QD=4.25;ReadPosRankSum=-1.589;SNPEFF_AMINO_ACID_CHANGE=S241A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1087096_1087802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333673    GT:AD:DP:GQ:PL    1/1:7,2:9:6.02:69,6,0
4    1087901    rs13106356    A    G    43.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.88;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454487    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:74,0,33
4    1090625    rs4045481    G    A    7215.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=199;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3479;MQ=59.77;MQ0=0;QD=36.26;SNPEFF_AMINO_ACID_CHANGE=T58;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1090553_1090627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333673    GT:AD:DP:GQ:PL    1/1:0,199:199:99:7215,527,0
4    1102050    rs4974644    C    T    1125.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333673    GT:AD:DP:GQ:PL    1/1:0,30:30:87.25:1159,87,0
4    1109213    rs7660109    G    A    741.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333673    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:775,57,0
4    1109311    rs28478922    C    T    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RNF212;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333673    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,72
4    1147333    rs963598    C    A    737.66    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.368;DB;DP=52;Dels=0.0;FS=1.544;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=14.19;ReadPosRankSum=-0.613;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC092535.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417557    GT:AD:DP:GQ:PL    0/1:25,27:52:99:768,0,690
4    1147407    rs11937228    G    A    1135.80    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=3.878;DB;DP=102;Dels=0.0;FS=0.827;HRun=0;HaplotypeScore=2.0321;MQ=59.82;MQ0=0;MQRankSum=0.271;QD=11.14;ReadPosRankSum=-0.473;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC092535.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417557    GT:AD:DP:GQ:PL    0/1:60,41:102:99:1166,0,1701
4    1164277    rs2279279    C    G    720.21    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DB;DP=36;Dels=0.0;FS=2.153;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.856;QD=20.01;ReadPosRankSum=0.692;SNPEFF_AMINO_ACID_CHANGE=V242L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1164190_1164364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290902    GT:AD:DP:GQ:PL    0/1:13,23:36:99:750,0,392
4    1165130    rs11247975    G    T    216.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.468;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.71;MQ0=0;MQRankSum=0.368;QD=12.02;ReadPosRankSum=0.053;SNPEFF_AMINO_ACID_CHANGE=A122E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1165051_1165274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290902    GT:AD:DP:GQ:PL    0/1:8,10:18:99:246,0,148
4    1165741    rs922697    A    G    1206.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=58.87;MQ0=0;QD=29.43;SNPEFF_AMINO_ACID_CHANGE=L40P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1165640_1165862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290902    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1240,99,0
4    1165764    rs11538062    C    T    573.57    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.425;QD=16.87;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=E32;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1165640_1165862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290902    GT:AD:DP:GQ:PL    0/1:13,21:34:99:604,0,406
4    1194594    rs13115903    A    T    46.54    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.567;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.819;QD=2.74;ReadPosRankSum=-1.071;SNPEFF_AMINO_ACID_CHANGE=L151H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1193480_1195204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092535.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314552    GT:AD:DP:GQ:PL    0/1:14,3:17:76.54:77,0,488
4    1222302    rs900020    G    A    42.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290921    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
4    1244267    rs2291199    A    G    201.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.468;QD=14.37;ReadPosRankSum=-0.865;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C4orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507044    GT:AD:DP:GQ:PL    0/1:6,8:14:99:231,0,170
4    1244416    rs1732115    A    G    682.76    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.58;DB;DP=45;Dels=0.0;FS=4.388;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-1.577;QD=15.17;ReadPosRankSum=-1.211;SNPEFF_AMINO_ACID_CHANGE=S19G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1244314_1245224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C4orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357591    GT:AD:DP:GQ:PL    0/1:19,26:45:99:713,0,626
4    1244879    rs1564508    A    G    432.75    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DB;DP=29;Dels=0.0;FS=5.62;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.686;QD=14.92;ReadPosRankSum=-0.908;SNPEFF_AMINO_ACID_CHANGE=Y173C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1244314_1245224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C4orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357591    GT:AD:DP:GQ:PL    0/1:12,17:29:99:463,0,363
4    1321516    rs2335937    C    A    302.61    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.064;DB;DP=20;Dels=0.0;FS=6.607;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.152;QD=15.13;ReadPosRankSum=0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512308    GT:AD:DP:GQ:PL    0/1:9,11:20:99:333,0,282
4    1330530    rs12646130    G    C    143.86    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.55;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502558    GT:AD:DP:GQ:PL    0/1:2,5:7:62.81:174,0,63
4    1330759    rs1128427    T    C    1088.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=W226R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1330649_1330778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382947    GT:AD:DP:GQ:PL    1/1:0,34:34:87.27:1121,87,0
4    1330983    rs13135102    A    C    66.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.74;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502558    GT:AD:DP:GQ:PL    0/1:1,3:4:20.46:97,0,20
4    1332142    rs111700625    C    T    226.93    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=19;Dels=0.0;FS=6.419;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.197;QD=11.94;ReadPosRankSum=-0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503653    GT:AD:DP:GQ:PL    0/1:11,8:19:99:257,0,351
4    1332175    rs13147602    A    G    1162.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503653    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1195,90,0
4    1343168    rs4974603    C    T    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,109
4    1343405    rs2276903    T    C    846.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_AMINO_ACID_CHANGE=I64;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1343312_1343642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389851    GT:AD:DP:GQ:PL    1/1:0,29:29:72.21:880,72,0
4    1343720    rs11247994    G    A    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
4    1345647    rs10000797    G    A    321.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.882;DB;DP=27;Dels=0.0;FS=6.226;HRun=0;HaplotypeScore=1.5449;MQ=58.27;MQ0=0;MQRankSum=0.311;QD=11.92;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    0/1:15,12:27:99:352,0,452
4    1346682    rs28711287    G    C    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    1348806    rs3903127    A    C    159.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=22.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:192,15,0
4    1369093    rs11941200    C    G    533.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=23.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    1/1:0,23:23:48.13:567,48,0
4    1369094    rs11946956    T    G    536.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    1/1:0,23:23:48.13:569,48,0
4    1374695    rs28614045    C    A    950.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=R145;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1374668_1374776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511563    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:984,72,0
4    1374774    rs28522910    C    T    453.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=P171L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1374668_1374776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511563    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:486,36,0
4    1374789    rs28733902    A    G    295.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
4    1377615    rs9996817    A    G    619.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9559;MQ=55.9;MQ0=0;QD=21.38;SNPEFF_AMINO_ACID_CHANGE=S192;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1377554_1377728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511563    GT:AD:DP:GQ:PL    1/1:0,25:29:48.16:653,48,0
4    1377873    rs9683830    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296312    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    1388115    rs6599309    C    G    72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.01;MQ0=0;QD=24.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
4    1388350    rs77782813    G    A    256.67    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.918;DB;DP=120;Dels=0.0;FS=8.508;HRun=0;HaplotypeScore=4.1173;MQ=53.62;MQ0=0;MQRankSum=-0.138;QD=2.14;ReadPosRankSum=-2.967;SNPEFF_AMINO_ACID_CHANGE=T10;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388321_1388596;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:87,32:120:99:287,0,2279
4    1388375    .    T    TCA    547.49    PASS    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DP=131;FS=14.112;HRun=0;HaplotypeScore=1130.5679;IndelType=I;MQ=53.25;MQ0=0;MQRankSum=-1.169;QD=4.15;ReadPosRankSum=-1.9;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:115,17:131:99:587,0,3793
4    1388413    rs78309237    T    C    1928.17    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=4.753;DB;DP=136;Dels=0.0;FS=1.515;HRun=1;HaplotypeScore=7.5243;MQ=54.98;MQ0=0;MQRankSum=-1.199;QD=14.18;ReadPosRankSum=1.522;SNPEFF_AMINO_ACID_CHANGE=C31;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388321_1388596;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:61,74:136:99:1958,0,1294
4    1388429    rs79298048    G    A    1810.07    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=2.059;DB;DP=132;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=6.7691;MQ=55.2;MQ0=0;MQRankSum=-0.851;QD=13.71;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=A37T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388321_1388596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:56,76:132:99:1840,0,1185
4    1388583    rs9328733    A    G    4318.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.22;MQ0=0;QD=27.33;SNPEFF_AMINO_ACID_CHANGE=H88R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388321_1388596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    1/1:0,156:158:99:4318,364,0
4    1388622    .    T    TCA    1626.65    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=5.368;DP=136;FS=7.918;HRun=0;HaplotypeScore=1121.3421;IndelType=I;MQ=53.99;MQ0=1;MQRankSum=-2.05;QD=11.87;ReadPosRankSum=1.703;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:97,37:136:99:1666,0,2993
4    1388631    .    C    G    646.98    HaplotypeScoreFilter13    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.213;DP=136;Dels=0.0;FS=13.037;HRun=0;HaplotypeScore=40.4562;MQ=52.95;MQ0=1;MQRankSum=-2.254;QD=4.76;ReadPosRankSum=2.444;SNPEFF_AMINO_ACID_CHANGE=P111R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:102,33:136:99:677,0,2513
4    1388635    rs74518227    T    C    598.74    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.294;DB;DP=141;Dels=0.0;FS=9.044;HRun=0;HaplotypeScore=9.9324;MQ=52.42;MQ0=2;MQRankSum=-2.991;QD=4.25;ReadPosRankSum=2.017;SNPEFF_AMINO_ACID_CHANGE=W96R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388626_1388842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:102,34:141:99:629,0,2417
4    1388693    rs78906219    C    G    899.13    HaplotypeScoreFilter13    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.223;DB;DP=123;Dels=0.0;FS=0.805;HRun=0;HaplotypeScore=16.8255;MQ=44.23;MQ0=15;MQRankSum=-1.877;QD=7.31;ReadPosRankSum=1.479;SNPEFF_AMINO_ACID_CHANGE=H132D;SNPEFF_CODON_CHANGE=Cat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:60,63:123:99:929,0,1394
4    1388724    rs76728908    C    G    777.64    HaplotypeScoreFilter13;MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.293;DB;DP=160;Dels=0.0;FS=4.099;HRun=0;HaplotypeScore=26.3576;MQ=38.75;MQ0=20;MQRankSum=-2.299;QD=4.86;ReadPosRankSum=0.503;SNPEFF_AMINO_ACID_CHANGE=P142R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:86,74:160:99:808,0,1480
4    1388726    .    T    C    105.35    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=1.723;DP=161;Dels=0.0;FS=33.116;HRun=0;HaplotypeScore=25.3629;MQ=38.7;MQ0=20;MQRankSum=-2.415;QD=0.65;ReadPosRankSum=-0.994;SNPEFF_AMINO_ACID_CHANGE=C143R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:132,28:161:99:135,0,2179
4    1388755    rs141481663    C    G    776.51    HaplotypeScoreFilter13    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.052;DB;DP=148;Dels=0.0;FS=6.976;HRun=0;HaplotypeScore=13.9997;MQ=41.62;MQ0=14;MQRankSum=-4.031;QD=5.25;ReadPosRankSum=0.385;SNPEFF_AMINO_ACID_CHANGE=H136D;SNPEFF_CODON_CHANGE=Cat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388626_1388842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:75,73:148:99:807,0,1395
4    1388757    rs138170890    T    C    708.25    HaplotypeScoreFilter13    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.287;DB;DP=145;Dels=0.0;FS=15.684;HRun=0;HaplotypeScore=13.9997;MQ=41.45;MQ0=14;MQRankSum=-4.276;QD=4.88;ReadPosRankSum=0.302;SNPEFF_AMINO_ACID_CHANGE=M153T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:70,72:145:99:738,0,1296
4    1388790    rs79415192    T    C    775.63    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.068;DB;DP=153;Dels=0.0;FS=5.223;HRun=0;HaplotypeScore=2.5184;MQ=43.87;MQ0=9;MQRankSum=-6.24;QD=5.07;ReadPosRankSum=-2.96;SNPEFF_AMINO_ACID_CHANGE=V164A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:82,70:153:99:806,0,1929
4    1388817    .    C    G    144.91    QDFilter2    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.25;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.0277;MQ=49.91;MQ0=1;MQRankSum=-0.769;QD=1.56;ReadPosRankSum=-0.568;SNPEFF_AMINO_ACID_CHANGE=P173R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:60,33:93:99:175,0,1479
4    1388819    rs144797159    T    C    136.42    QDFilter2    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.835;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.3627;MQ=50.86;MQ0=0;MQRankSum=0.306;QD=1.55;ReadPosRankSum=-0.355;SNPEFF_AMINO_ACID_CHANGE=C174R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1385340_1389780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324803    GT:AD:DP:GQ:PL    0/1:60,27:88:99:166,0,1420
4    1388974    rs71614969    T    C    186.20    QDFilter2    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=103;Dels=0.0;FS=12.071;HRun=0;HaplotypeScore=2.5494;MQ=51.95;MQ0=1;MQRankSum=-0.088;QD=1.81;ReadPosRankSum=-3.62;SNPEFF_AMINO_ACID_CHANGE=D167;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388967_1389640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:80,21:103:99:216,0,2160
4    1389005    rs71614970    T    C    842.16    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.603;DB;DP=129;Dels=0.0;FS=5.842;HRun=0;HaplotypeScore=7.4519;MQ=51.12;MQ0=1;MQRankSum=-2.22;QD=6.53;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=C178R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388967_1389640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:74,54:129:99:872,0,1680
4    1389101    rs71614971    A    G    1060.16    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.805;DB;DP=108;Dels=0.0;FS=6.272;HRun=2;HaplotypeScore=2.4167;MQ=52.51;MQ0=0;MQRankSum=0.069;QD=9.82;ReadPosRankSum=-0.182;SNPEFF_AMINO_ACID_CHANGE=S210G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388967_1389640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:58,48:108:99:1090,0,1386
4    1389156    rs71614972    T    C    2726.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.116;DB;DP=115;Dels=0.0;FS=8.69;HRun=0;HaplotypeScore=12.9523;MQ=52.34;MQ0=0;MQRankSum=2.458;QD=23.71;ReadPosRankSum=-0.68;SNPEFF_AMINO_ACID_CHANGE=M228T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388967_1389640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    1/1:8,106:115:99:2759,221,0
4    1389161    rs71614973    A    G    1276.21    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.165;DB;DP=108;Dels=0.0;FS=2.91;HRun=2;HaplotypeScore=9.0317;MQ=52.29;MQ0=0;MQRankSum=-1.883;QD=11.82;ReadPosRankSum=2.518;SNPEFF_AMINO_ACID_CHANGE=S230G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1388967_1389640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIPAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382944    GT:AD:DP:GQ:PL    0/1:59,49:108:99:1306,0,1352
4    1698183    rs798719    C    T    1073.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318386    GT:AD:DP:GQ:PL    1/1:0,29:29:84.25:1107,84,0
4    1701317    rs2247341    G    A    1832.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=Y112;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1701291_1701428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429429    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1866,138,0
4    1725651    rs3099555    T    C    901.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313288    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:935,69,0
4    1737108    rs3752747    C    T    860.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313288    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:893,66,0
4    1737262    rs3752749    T    C    129.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313288    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
4    1737404    rs34859791    C    CCT    1284.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=90.5734;IndelType=I;MQ=59.22;MQ0=0;QD=53.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313288    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:1327,72,0
4    1737502    rs11248073    C    T    1620.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=F563;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1737458_1737561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313288    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1654,123,0
4    1737585    rs11729657    T    C    538.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485989    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:572,45,0
4    1742400    rs4865463    T    C    602.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466077    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:636,48,0
4    1742779    rs1530588    G    A    1121.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466077    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1155,87,0
4    1746125    rs72598767    C    CT    218.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=20.6019;IndelType=I;MQ=61.78;MQ0=0;QD=36.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470808    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:261,18,0
4    1746229    rs2290011    G    T    993.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=33.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470808    GT:AD:DP:GQ:PL    1/1:0,30:30:78.22:1026,78,0
4    1746844    rs8389    A    T    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470808    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
4    1805296    rs3135883    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474521    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    1806015    rs17884871    G    C    121.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9581;MQ=51.13;MQ0=0;MQRankSum=-0.597;QD=8.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474521    GT:AD:DP:GQ:PL    0/1:6,8:14:99:152,0,133
4    1807244    .    G    GCGC    413.47    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DP=21;FS=0.0;HRun=0;HaplotypeScore=71.6478;IndelType=I;MQ=61.02;MQ0=0;MQRankSum=0.204;QD=19.69;ReadPosRankSum=0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474521    GT:AD:DP:GQ:PL    0/1:12,7:21:99:452,0,377
4    1807894    rs7688609    G    A    605.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.85;SNPEFF_AMINO_ACID_CHANGE=T539;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1807778_1807900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352904    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:639,48,0
4    1815884    rs4242021    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417150    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
4    1815990    rs4865477    G    A    1122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417150    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1156,87,0
4    1818594    rs9328763    C    T    2132.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_AMINO_ACID_CHANGE=K597;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1818454_1818641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302787    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2166,163,0
4    1834666    rs140729898    T    C    851.77    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.832;DB;DP=44;Dels=0.0;FS=11.658;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-1.494;QD=19.36;ReadPosRankSum=-0.121;SNPEFF_AMINO_ACID_CHANGE=E295;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1834471_1834674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302787    GT:AD:DP:GQ:PL    0/1:17,27:44:99:882,0,502
4    1843324    rs116753949    C    T    439.93    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=41;Dels=0.0;FS=2.911;HRun=0;HaplotypeScore=1.8216;MQ=58.87;MQ0=0;MQRankSum=-0.433;QD=10.73;ReadPosRankSum=0.565;SNPEFF_AMINO_ACID_CHANGE=R115H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1843074_1843524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302787    GT:AD:DP:GQ:PL    0/1:23,18:41:99:470,0,635
4    1954945    rs489550    A    G    3459.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=M26V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_1954479_1955251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382888    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3459,277,0
4    1958171    rs494893    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    1961137    rs474235    G    A    295.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.2;MQ0=0;QD=22.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502425    GT:AD:DP:GQ:PL    1/1:0,13:13:30.03:328,30,0
4    1985257    rs553148    G    A    773.23    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-2.357;QD=17.98;ReadPosRankSum=-1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312087    GT:AD:DP:GQ:PL    0/1:15,28:43:99:803,0,422
4    1988188    rs3034718    C    CCT    302.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=61.8732;IndelType=I;MQ=58.63;MQ0=0;MQRankSum=-1.067;QD=33.66;ReadPosRankSum=-1.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312087    GT:AD:DP:GQ:PL    0/1:3,5:9:71.63:342,0,72
4    1988193    rs1077020    T    C    220.71    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=58.63;MQ0=0;MQRankSum=0.762;QD=24.52;ReadPosRankSum=-1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312087    GT:AD:DP:GQ:PL    0/1:2,7:9:51.12:251,0,51
4    1988257    rs572770    A    G    144.43    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=-0.736;QD=24.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312087    GT:AD:DP:GQ:PL    0/1:1,5:6:11.57:174,0,12
4    2010831    rs231189    G    C    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455762    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
4    2065373    rs454226    T    G    317.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT8L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331662    GT:AD:DP:GQ:PL    1/1:0,11:12:30.09:350,30,0
4    2087202    rs3135157    A    G    236.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=26.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253313    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:269,21,0
4    2158408    rs10034425    C    T    237.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253313    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
4    2210065    rs2353552    C    A    1255.84    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.503;QD=12.31;ReadPosRankSum=-0.201;SNPEFF_AMINO_ACID_CHANGE=Q121H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2209714_2210214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382865    GT:AD:DP:GQ:PL    0/1:57,45:102:99:1286,0,1696
4    2272865    rs11728581    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290974    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    2275145    rs736455    G    A    1026.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290974    GT:AD:DP:GQ:PL    1/1:0,28:28:84.27:1059,84,0
4    2275718    rs2182682    G    A    459.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290974    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:492,36,0
4    2275835    rs2051561    G    A    542.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=F25;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2275789_2275943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508471    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:575,45,0
4    2276047    rs11248093    T    C    114.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290974    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
4    2306053    rs661301    A    G    707.98    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=48;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=1.21;QD=14.75;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=S602P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2306016_2307263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000515312    GT:AD:DP:GQ:PL    0/1:22,26:48:99:738,0,669
4    2307121    rs61742112    G    A    604.44    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=0.378;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.137;QD=16.34;ReadPosRankSum=0.034;SNPEFF_AMINO_ACID_CHANGE=P246S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2306016_2307263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000515312    GT:AD:DP:GQ:PL    0/1:11,26:37:99:634,0,303
4    2341194    rs2071680    T    C    646.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.8;SNPEFF_AMINO_ACID_CHANGE=A122;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2341180_2341382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000509171    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:680,51,0
4    2343150    rs3118613    T    A    150.13    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=6.892;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=12.51;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505421    GT:AD:DP:GQ:PL    0/1:7,5:12:99:180,0,149
4    2343181    rs2071679    C    T    163.24    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;Dels=0.0;FS=13.57;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=9.6;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505421    GT:AD:DP:GQ:PL    0/1:10,7:17:99:193,0,326
4    2343349    rs615447    C    G    428.80    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.777;DB;DP=34;Dels=0.0;FS=5.757;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.235;QD=12.61;ReadPosRankSum=-0.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505421    GT:AD:DP:GQ:PL    0/1:19,15:34:99:459,0,501
4    2428909    rs1203782    C    A    352.95    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=17;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=20.76;ReadPosRankSum=-0.955;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-503N18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382849    GT:AD:DP:GQ:PL    0/1:6,11:17:99:383,0,185
4    2429022    rs1203781    A    C    343.49    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.946;DB;DP=23;Dels=0.0;FS=7.471;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.341;QD=14.93;ReadPosRankSum=1.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-503N18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382849    GT:AD:DP:GQ:PL    0/1:10,13:23:99:373,0,300
4    2429328    rs1203780    G    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-503N18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382849    GT:AD:DP:GQ:PL    0/1:2,2:4:69.18:71,0,69
4    2499117    rs3749467    T    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503123    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    2502299    rs55745322    A    ATT    553.78    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.308;DB;DP=27;FS=0.0;HRun=1;HaplotypeScore=67.5633;IndelType=I;MQ=59.14;MQ0=0;MQRankSum=0.052;QD=20.51;ReadPosRankSum=1.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503123    GT:AD:DP:GQ:PL    0/1:16,11:27:99:593,0,620
4    2664506    .    T    G    70.84    QDFilter2    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.581;DP=48;Dels=0.0;FS=6.117;HRun=2;HaplotypeScore=5.053;MQ=57.05;MQ0=0;MQRankSum=-0.413;QD=1.48;ReadPosRankSum=3.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324666    GT:AD:DP:GQ:PL    0/1:19,29:48:99:101,0,464
4    2698364    rs3733215    C    T    186.82    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=17;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.317;QD=10.99;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324666    GT:AD:DP:GQ:PL    0/1:10,7:17:99:217,0,337
4    2717690    rs2295499    C    T    355.73    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=14.82;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324666    GT:AD:DP:GQ:PL    0/1:13,11:24:99:386,0,470
4    2743999    rs232712    A    G    125.68    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=11.43;ReadPosRankSum=-1.186;SNPEFF_AMINO_ACID_CHANGE=A318;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2743375_2744247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510267    GT:AD:DP:GQ:PL    0/1:5,6:11:99:156,0,140
4    2744087    rs2269495    G    A    243.68    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.766;QD=15.23;ReadPosRankSum=-1.12;SNPEFF_AMINO_ACID_CHANGE=A289V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2743375_2744247;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000510267    GT:AD:DP:GQ:PL    0/1:7,9:16:99:274,0,201
4    2746285    rs13145281    A    C    477.25    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=3.792;DB;DP=62;Dels=0.0;FS=8.271;HRun=4;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=7.7;ReadPosRankSum=-0.435;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507686    GT:AD:DP:GQ:PL    0/1:41,21:62:99:507,0,1078
4    2746307    rs11728346    A    C    483.89    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.553;DB;DP=52;Dels=0.0;FS=4.642;HRun=1;HaplotypeScore=0.8941;MQ=59.56;MQ0=0;MQRankSum=-0.336;QD=9.31;ReadPosRankSum=0.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507686    GT:AD:DP:GQ:PL    0/1:31,21:52:99:514,0,951
4    2749301    rs13105492    C    G    1870.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=26.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315423    GT:AD:DP:GQ:PL    1/1:0,71:71:99:1903,171,0
4    2749838    rs17412860    T    C    71.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315423    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
4    2906453    rs2239728    T    G    276.03    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.862;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.892;QD=12.0;ReadPosRankSum=-0.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506157    GT:AD:DP:GQ:PL    0/1:12,11:23:99:306,0,395
4    2906707    rs4961    G    T    178.66    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=28;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=0.5784;MQ=58.5;MQ0=0;MQRankSum=-0.282;QD=6.38;ReadPosRankSum=-0.376;SNPEFF_AMINO_ACID_CHANGE=G460W;SNPEFF_CODON_CHANGE=Ggg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2906491_2906835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264758    GT:AD:DP:GQ:PL    0/1:17,11:28:99:209,0,488
4    2916762    rs4963    C    G    66.43    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=6.64;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=S586C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2916611_2916767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398129    GT:AD:DP:GQ:PL    0/1:7,3:10:96.42:96,0,263
4    2928413    rs4964    T    C    377.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.616;QD=9.94;ReadPosRankSum=-2.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539149    GT:AD:DP:GQ:PL    0/1:19,19:38:99:408,0,600
4    2933271    rs1263348    G    A    90.37    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=13;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=6.95;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264758    GT:AD:DP:GQ:PL    0/1:9,4:13:99:120,0,271
4    2934308    rs1263349    G    A    754.83    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.792;DB;DP=54;Dels=0.0;FS=7.963;HRun=0;HaplotypeScore=0.9894;MQ=59.57;MQ0=0;MQRankSum=-0.805;QD=13.98;ReadPosRankSum=-0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264758    GT:AD:DP:GQ:PL    0/1:26,28:54:99:785,0,794
4    2935251    rs2301374    T    A    307.34    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.51;DB;DP=27;Dels=0.0;FS=2.473;HRun=1;HaplotypeScore=1.9889;MQ=53.71;MQ0=0;MQRankSum=-1.51;QD=11.38;ReadPosRankSum=0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264758    GT:AD:DP:GQ:PL    0/1:14,12:27:99:337,0,296
4    2943361    rs1054090    T    C    47.60    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=11;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=4.33;ReadPosRankSum=-1.214;SNPEFF_AMINO_ACID_CHANGE=Q716R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2943309_2943456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOP14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314262    GT:AD:DP:GQ:PL    0/1:7,4:11:77.60:78,0,223
4    2949878    rs7665452    A    G    461.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.477;DB;DP=40;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.366;QD=11.54;ReadPosRankSum=-1.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314262    GT:AD:DP:GQ:PL    0/1:20,20:40:99:491,0,693
4    2951804    rs2515960    A    G    2048.36    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.032;DB;DP=166;Dels=0.0;FS=5.916;HRun=0;HaplotypeScore=0.9159;MQ=59.75;MQ0=0;MQRankSum=-1.068;QD=12.34;ReadPosRankSum=0.417;SNPEFF_AMINO_ACID_CHANGE=L279S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_2951661_2951940;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOP14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546137    GT:AD:DP:GQ:PL    0/1:90,76:166:99:2078,0,2670
4    2955145    rs1475977    T    C    423.27    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.267;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.469;QD=14.6;ReadPosRankSum=-1.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314262    GT:AD:DP:GQ:PL    0/1:16,13:29:99:453,0,496
4    2955192    rs1475976    C    G    1219.10    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.757;DB;DP=69;Dels=0.0;FS=1.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.217;QD=17.67;ReadPosRankSum=0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314262    GT:AD:DP:GQ:PL    0/1:30,39:69:99:1249,0,922
4    2955465    rs1475975    T    C    407.67    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.305;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.16;QD=11.02;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314262    GT:AD:DP:GQ:PL    0/1:22,15:37:99:438,0,777
4    2959672    rs2256086    A    G    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NOP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314262    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
4    2988636    rs2488815    C    T    50.42    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=15;Dels=0.0;FS=2.515;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.588;QD=3.36;ReadPosRankSum=-0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    0/1:11,4:15:80.41:80,0,365
4    3006043    rs1024323    C    T    1213.22    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.587;DB;DP=85;Dels=0.0;FS=1.001;HRun=0;HaplotypeScore=1.5983;MQ=60.0;MQ0=0;MQRankSum=0.004;QD=14.27;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=A110V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3005958_3006061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    0/1:41,44:85:99:1243,0,1246
4    3015089    rs76887174    C    A    43.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:73,0,26
4    3029588    rs2857844    G    A    997.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    1/1:0,28:28:78.23:1031,78,0
4    3029916    rs2798282    A    G    158.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:191,15,0
4    3030797    rs12696706    C    A    81.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.4;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:112,0,28
4    3039150    rs1801058    T    C    1595.83    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.374;DB;DP=103;Dels=0.0;FS=1.913;HRun=0;HaplotypeScore=0.9665;MQ=59.78;MQ0=0;MQRankSum=-0.386;QD=15.49;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=V454A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3039101_3039238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    0/1:45,58:103:99:1626,0,1362
4    3039311    rs2071689    C    T    205.08    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=20;Dels=0.05;FS=3.757;HRun=0;HaplotypeScore=2.5981;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=9.77;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    0/1:9,11:20:99:235,0,244
4    3040068    rs34020100    T    G    897.88    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.351;DB;DP=83;Dels=0.0;FS=2.125;HRun=1;HaplotypeScore=0.734;MQ=59.72;MQ0=0;MQRankSum=-1.585;QD=10.82;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    0/1:42,40:83:99:928,0,1292
4    3040279    rs11451355    G    GA    337.15    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.967;DB;DP=59;FS=0.0;HRun=13;HaplotypeScore=212.2604;IndelType=I;MQ=59.61;MQ0=0;MQRankSum=-0.086;QD=5.71;ReadPosRankSum=2.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345167    GT:AD:DP:GQ:PL    0/1:38,18:59:99:376,0,344
4    3117579    rs17780797    T    C    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:69,0,66
4    3135953    rs363066    T    G    153.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=17.08;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:3,6:9:96.39:184,0,96
4    3142528    rs363072    A    T    54.45    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=5.45;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:7,3:10:84.45:84,0,253
4    3174496    rs11276773    TGATTCACA    T    408.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=59.683;IndelType=D;MQ=48.94;MQ0=0;MQRankSum=-0.742;QD=58.36;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:1,6:7:99:448,0,115
4    3180021    rs363096    T    C    457.50    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.865;QD=9.34;ReadPosRankSum=-1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:29,20:49:99:487,0,964
4    3210330    rs363088    A    T    30.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.3;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502820    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:61,0,33
4    3213832    rs362336    G    A    482.56    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.097;DB;DP=43;Dels=0.0;FS=1.363;HRun=1;HaplotypeScore=1.7046;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=11.22;ReadPosRankSum=-1.182;SNPEFF_AMINO_ACID_CHANGE=E2197;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3213656_3213869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:25,18:43:99:513,0,676
4    3215835    rs362331    T    C    218.22    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.069;DB;DP=17;Dels=0.0;FS=15.315;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.78;QD=12.84;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=Y2309H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3215685_3215862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:8,9:17:99:248,0,245
4    3216815    rs916171    C    G    286.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.883;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.854;QD=15.92;ReadPosRankSum=-0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509751    GT:AD:DP:GQ:PL    0/1:9,9:18:99:317,0,277
4    3219613    rs2857790    A    C    1494.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.24;MQ0=0;MQRankSum=1.417;QD=28.19;ReadPosRankSum=1.417;SNPEFF_AMINO_ACID_CHANGE=L2392;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3219492_3219679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1527,117,0
4    3225371    rs82334    A    C    178.82    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=17.88;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:3,7:10:89.93:209,0,90
4    3225389    rs82333    A    G    232.47    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=23.25;ReadPosRankSum=1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:3,7:10:91.20:262,0,91
4    3227419    rs362273    A    G    169.17    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.932;DB;DP=20;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.555;QD=8.46;ReadPosRankSum=-0.792;SNPEFF_AMINO_ACID_CHANGE=L2599;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3227388_3227470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:13,7:20:99:199,0,328
4    3230804    rs2530598    A    C    65.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8321;MQ=57.39;MQ0=0;MQRankSum=1.221;QD=7.33;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:6,3:9:95.95:96,0,147
4    3234828    rs2269478    G    T    383.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.103;DB;DP=26;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.154;QD=14.77;ReadPosRankSum=-0.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512068    GT:AD:DP:GQ:PL    0/1:13,13:26:99:414,0,406
4    3234980    rs362272    G    A    985.48    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=3.477;DB;DP=83;Dels=0.0;FS=3.125;HRun=0;HaplotypeScore=3.196;MQ=59.22;MQ0=0;MQRankSum=-0.023;QD=11.87;ReadPosRankSum=-0.925;SNPEFF_AMINO_ACID_CHANGE=V2786I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3234890_3235080;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    0/1:43,40:83:99:1015,0,1272
4    3235184    rs3216820    GC    G    287.54    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.782;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=61.6536;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.599;QD=13.07;ReadPosRankSum=-0.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512068    GT:AD:DP:GQ:PL    0/1:12,10:22:99:327,0,430
4    3235241    rs362314    A    G    67.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.69;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512068    GT:AD:DP:GQ:PL    0/1:3,4:7:97.85:98,0,101
4    3236881    rs2798230    T    G    500.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=29.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    1/1:0,16:17:45.13:533,45,0
4    3236883    rs2858082    A    G    498.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=27.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355072    GT:AD:DP:GQ:PL    1/1:0,18:18:45.13:531,45,0
4    3240159    rs2071704    C    T    155.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=15;Dels=0.0;FS=5.219;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.355;QD=10.36;ReadPosRankSum=-0.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508321    GT:AD:DP:GQ:PL    0/1:9,6:15:99:185,0,254
4    3240526    rs2858081    A    G    562.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=24.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508321    GT:AD:DP:GQ:PL    1/1:0,23:23:51.13:596,51,0
4    3254767    rs3129321    T    A    115.74    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.978;QD=8.9;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438480    GT:AD:DP:GQ:PL    0/1:8,5:13:99:146,0,284
4    3255258    rs2798227    A    G    315.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.19;DB;DP=39;Dels=0.0;FS=1.729;HRun=0;HaplotypeScore=0.5784;MQ=58.92;MQ0=0;MQRankSum=-0.104;QD=8.1;ReadPosRankSum=-2.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438480    GT:AD:DP:GQ:PL    0/1:26,13:39:99:346,0,826
4    3255292    rs2798226    C    T    230.75    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.041;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1877;MQ=57.89;MQ0=0;MQRankSum=0.872;QD=7.96;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438480    GT:AD:DP:GQ:PL    0/1:20,9:29:99:261,0,460
4    3265479    rs3095078    C    T    130.72    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.333;QD=9.34;ReadPosRankSum=0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510580    GT:AD:DP:GQ:PL    0/1:9,5:14:99:161,0,329
4    3265710    rs3095077    C    T    1896.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.901;DB;DP=112;Dels=0.0;FS=1.86;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.24;QD=16.94;ReadPosRankSum=-0.707;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510580    GT:AD:DP:GQ:PL    0/1:42,70:112:99:1927,0,1075
4    3318413    rs2236052    A    G    1132.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=S172;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3317797_3319778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RGS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336727    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1165,90,0
4    3319271    rs10006362    C    T    1066.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_AMINO_ACID_CHANGE=D458;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3317797_3319778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RGS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336727    GT:AD:DP:GQ:PL    1/1:0,30:30:87.26:1099,87,0
4    3319508    rs150230031    G    T    631.25    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.15;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8893;MQ=59.55;MQ0=0;MQRankSum=-1.69;QD=12.38;ReadPosRankSum=-0.07;SNPEFF_AMINO_ACID_CHANGE=W537C;SNPEFF_CODON_CHANGE=tgG/tgT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3317797_3319778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RGS12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336727    GT:AD:DP:GQ:PL    0/1:26,24:51:99:661,0,745
4    3388163    rs147432997    C    T    469.56    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.404;QD=9.58;ReadPosRankSum=0.093;SNPEFF_AMINO_ACID_CHANGE=G15;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3388061_3388164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RGS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538395    GT:AD:DP:GQ:PL    0/1:31,18:49:99:500,0,765
4    3417845    rs3213507    G    C    220.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=21;Dels=0.0;FS=4.285;HRun=1;HaplotypeScore=1.86;MQ=60.0;MQ0=0;MQRankSum=-0.424;QD=10.51;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=L150;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3417705_3417848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RGS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538395    GT:AD:DP:GQ:PL    0/1:12,9:21:99:251,0,379
4    3443931    rs13108218    A    G    70.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.76;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RGS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338806    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,150
4    3444593    rs2073504    G    A    759.86    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.056;DB;DP=65;Dels=0.0;FS=7.519;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=1.123;QD=11.69;ReadPosRankSum=-0.626;SNPEFF_AMINO_ACID_CHANGE=P84;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3444459_3444639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGFAC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382774    GT:AD:DP:GQ:PL    0/1:30,34:65:99:790,0,873
4    3445745    rs4690097    C    T    1376.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=59.13;MQ0=0;QD=25.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RGS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338806    GT:AD:DP:GQ:PL    1/1:2,49:53:99:1410,111,0
4    3446751    rs3752439    T    C    114.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGFAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382774    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:147,12,0
4    3446883    rs3752442    A    G    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGFAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382774    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
4    3449886    rs28468427    G    A    67.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.65;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=E556;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3449855_3450003;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGFAC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382774    GT:AD:DP:GQ:PL    0/1:4,3:7:97.57:98,0,138
4    3475107    rs2344208    G    C    220.69    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=15.76;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:5,9:14:99:251,0,112
4    3475252    rs4325970    T    C    484.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.51;SNPEFF_AMINO_ACID_CHANGE=L74;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3475133_3475363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:518,39,0
4    3478013    rs2699424    G    A    57.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.97;MQ0=0;MQRankSum=1.422;QD=6.35;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:6,3:9:87.12:87,0,94
4    3478020    rs114112298    C    T    133.88    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.47;MQ0=0;MQRankSum=1.134;QD=10.3;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:8,5:13:99:164,0,220
4    3478051    rs2699425    T    C    258.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.454;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=58.45;MQ0=0;MQRankSum=0.818;QD=12.33;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:12,9:21:99:289,0,261
4    3478323    rs2699426    T    C    263.28    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.875;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.086;QD=18.81;ReadPosRankSum=0.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511267    GT:AD:DP:GQ:PL    0/1:2,12:14:51.68:293,0,52
4    3487151    rs916189    A    G    370.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    1/1:0,13:13:36.07:403,36,0
4    3487237    rs2006791    A    G    984.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    1/1:0,32:32:75.24:1018,75,0
4    3491721    rs2699418    T    C    34.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
4    3494344    rs13115832    C    T    74.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:2,3:5:62.84:105,0,63
4    3494350    rs13146874    G    C    65.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.16;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:2,3:5:62.84:96,0,63
4    3494449    rs67004955    AC    A    58.97    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.63;DB;DP=25;FS=2.456;HRun=5;HaplotypeScore=61.9553;IndelType=D;MQ=59.25;MQ0=0;MQRankSum=0.142;QD=2.36;ReadPosRankSum=1.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:20,5:25:98:98,0,708
4    3494826    rs6811856    A    C    109.64    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.72;QD=15.66;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=S371;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3494486_3496210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:2,5:7:29.72:140,0,30
4    3494847    rs6831659    G    A    44.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.38;QD=7.48;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=A378;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3494486_3496210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:2,4:6:35.73:75,0,36
4    3494898    rs6850908    C    T    36.24    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=9.06;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=Y395;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3494486_3496210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:66,0,34
4    3495446    rs10022432    C    T    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503688    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
4    3498448    rs3135164    T    C    352.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=25.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340083    GT:AD:DP:GQ:PL    1/1:0,14:14:30.08:385,30,0
4    3514695    rs6789    A    G    95.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.58;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509198    GT:AD:DP:GQ:PL    0/1:3,4:7:63.82:125,0,64
4    3516369    rs1794441    G    A    255.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509198    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
4    3516448    rs2285088    T    C    362.60    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.279;DB;DP=23;Dels=0.0;FS=1.804;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.093;QD=15.77;ReadPosRankSum=0.899;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509198    GT:AD:DP:GQ:PL    0/1:10,13:23:99:393,0,282
4    3516689    rs2515967    T    C    987.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=29.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509198    GT:AD:DP:GQ:PL    1/1:0,33:33:84.23:1021,84,0
4    3516742    rs1794442    A    G    630.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509198    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:663,54,0
4    3519617    rs2498328    G    C    203.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500728    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:237,18,0
4    3521939    rs1741547    T    A    423.48    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.436;DB;DP=35;Dels=0.0;FS=9.165;HRun=0;HaplotypeScore=1.7273;MQ=60.0;MQ0=0;MQRankSum=-0.611;QD=12.1;ReadPosRankSum=-0.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500728    GT:AD:DP:GQ:PL    0/1:18,17:35:99:453,0,513
4    3526786    rs1800485    C    T    1250.33    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=5.713;DB;DP=86;Dels=0.0;FS=2.147;HRun=0;HaplotypeScore=2.5929;MQ=59.46;MQ0=0;MQRankSum=1.141;QD=14.54;ReadPosRankSum=1.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500728    GT:AD:DP:GQ:PL    0/1:41,45:86:99:1280,0,1032
4    3589432    rs10937953    G    A    133.46    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=19;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=2.97;MQ=50.54;MQ0=0;MQRankSum=-2.532;QD=7.02;ReadPosRankSum=-1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:9,10:19:99:163,0,250
4    3589447    rs113094223    T    TGA    341.96    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=23;FS=5.18;HRun=0;HaplotypeScore=380.3124;IndelType=I;MQ=46.22;MQ0=0;MQRankSum=-1.87;QD=14.87;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:16,7:23:99:381,0,345
4    3589463    rs10937954    G    A    319.80    HaplotypeScoreFilter13    AB=0.19;AC=1;AF=0.50;AN=2;BaseQRankSum=1.567;DB;DP=22;Dels=0.0;FS=6.043;HRun=0;HaplotypeScore=21.7516;MQ=44.1;MQ0=0;MQRankSum=-1.746;QD=14.54;ReadPosRankSum=0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:4,17:22:99:350,0,113
4    3589491    rs10937957    T    A    59.99    HaplotypeScoreFilter13;SnpCluster    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=0.64;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.876;MQ=46.88;MQ0=0;MQRankSum=-1.493;QD=2.5;ReadPosRankSum=0.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:19,5:24:89.98:90,0,404
4    3589492    .    G    A    51.10    HaplotypeScoreFilter13;SnpCluster    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DP=24;Dels=0.0;FS=2.326;HRun=0;HaplotypeScore=16.9094;MQ=46.88;MQ0=0;MQRankSum=-2.567;QD=2.13;ReadPosRankSum=1.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:18,6:24:81.10:81,0,401
4    3589498    rs61516862    G    A    78.48    HaplotypeScoreFilter13;SnpCluster    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.297;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=25.9397;MQ=46.91;MQ0=0;MQRankSum=-2.314;QD=2.8;ReadPosRankSum=1.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:20,8:28:99:108,0,465
4    3589503    rs28551488    T    C    183.61    HaplotypeScoreFilter13;SnpCluster    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=31.8593;MQ=45.75;MQ0=0;MQRankSum=1.66;QD=7.06;ReadPosRankSum=-2.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:16,10:26:99:214,0,334
4    3589507    rs79469661    G    A    147.73    HaplotypeScoreFilter13;SnpCluster    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.798;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=18.9654;MQ=45.85;MQ0=0;MQRankSum=-2.325;QD=5.28;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:18,10:28:99:178,0,441
4    3589508    rs28676579    A    G    193.28    HaplotypeScoreFilter13;SnpCluster    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.376;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=19.9637;MQ=45.85;MQ0=0;MQRankSum=2.399;QD=6.9;ReadPosRankSum=-1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:17,11:28:99:223,0,389
4    3589510    rs79802790    G    A    147.01    HaplotypeScoreFilter13;SnpCluster    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=18.962;MQ=45.24;MQ0=0;MQRankSum=-1.883;QD=5.44;ReadPosRankSum=1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:17,10:27:99:177,0,447
4    3589543    rs28496857    G    T    219.12    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=51.33;MQ0=0;MQRankSum=2.263;QD=6.85;ReadPosRankSum=1.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:23,9:32:99:249,0,598
4    3589560    rs10937958    A    G    549.44    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.369;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.27;MQ0=0;MQRankSum=-3.219;QD=12.78;ReadPosRankSum=1.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:22,21:43:99:579,0,653
4    3589623    rs10937959    G    A    1111.56    HaplotypeScoreFilter13    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.13;DB;DP=81;Dels=0.0;FS=0.926;HRun=0;HaplotypeScore=19.8305;MQ=55.72;MQ0=0;MQRankSum=2.21;QD=13.72;ReadPosRankSum=-0.019;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502775    GT:AD:DP:GQ:PL    0/1:44,37:81:99:1142,0,1201
4    3589655    .    CACTCCCAGATGCAG    C    323.92    PASS    AB=0.937;AC=1;AF=0.50;AN=2;BaseQRankSum=4.177;DP=89;FS=9.957;HRun=0;HaplotypeScore=1496.5833;IndelType=D;MQ=55.91;MQ0=0;MQRankSum=-4.402;QD=3.64;ReadPosRankSum=1.979;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_3589602_3589777;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:83,6:89:99:363,0,14536
4    3589689    rs7657417    C    A    1509.93    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=105;Dels=0.0;FS=0.815;HRun=1;HaplotypeScore=3.9684;MQ=56.32;MQ0=0;MQRankSum=2.055;QD=14.38;ReadPosRankSum=0.39;SNPEFF_AMINO_ACID_CHANGE=H19Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3589602_3589777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:52,53:105:99:1540,0,1329
4    3589719    rs66481256    CA    C    2837    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=8.089;DB;DP=126;FS=0.0;HRun=2;HaplotypeScore=795.143;IndelType=D;MQ=57.7;MQ0=0;MQRankSum=-1.564;QD=22.52;ReadPosRankSum=0.447;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_3589602_3589777;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:42,84:126:99:2876,0,1173
4    3589737    .    C    T    959.31    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.406;DP=140;Dels=0.0;FS=7.719;HRun=1;HaplotypeScore=1.6648;MQ=58.49;MQ0=0;MQRankSum=0.796;QD=6.85;ReadPosRankSum=0.276;SNPEFF_AMINO_ACID_CHANGE=I35;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3589602_3589777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:100,39:140:99:989,0,3136
4    3589846    rs7672828    T    C    1490.81    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.514;DB;DP=107;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9913;MQ=58.26;MQ0=0;MQRankSum=1.081;QD=13.93;ReadPosRankSum=0.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:55,52:107:99:1521,0,1709
4    3589893    rs6843750    G    A    377.19    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.043;DB;DP=52;Dels=0.0;FS=2.799;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.406;QD=7.25;ReadPosRankSum=-0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:36,16:52:99:407,0,1298
4    3589990    rs7658013    C    T    61.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.73;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:5,3:8:91.82:92,0,175
4    3590029    rs7658178    C    T    73.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.2;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:3,3:6:97.18:103,0,97
4    3590051    rs7658195    C    T    78.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:2,3:5:61.03:109,0,61
4    3590055    rs7686410    G    A    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,107
4    3590071    rs7658203    C    G    35.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:3,2:5:65.59:66,0,71
4    3590399    rs73199380    T    C    54.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.937;QD=7.77;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:4,3:7:84.38:84,0,146
4    3590410    rs73199381    C    T    62.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-2.072;QD=6.22;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:6,4:10:92.15:92,0,171
4    3590416    rs73199382    G    T    91.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.133;QD=9.1;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,170
4    3590462    rs73072421    C    T    229.33    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.134;QD=10.42;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:13,9:22:99:259,0,443
4    3590475    rs73072422    C    T    295.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.464;DB;DP=28;Dels=0.0;FS=3.123;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.708;QD=10.56;ReadPosRankSum=0.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:16,12:28:99:326,0,506
4    3590496    rs73072424    G    T    354.01    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.926;DB;DP=33;Dels=0.0;FS=2.98;HRun=1;HaplotypeScore=0.8941;MQ=58.59;MQ0=0;MQRankSum=1.886;QD=10.73;ReadPosRankSum=1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:20,13:33:99:384,0,588
4    3590537    rs73199384    G    C    755.48    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=5.461;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.205;QD=13.99;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:29,25:54:99:785,0,807
4    3590549    rs73793633    G    A    705.18    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=5.534;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=-0.197;QD=12.16;ReadPosRankSum=1.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:34,24:58:99:735,0,987
4    3590577    rs73793634    G    A    1189.10    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=5.133;DB;DP=94;Dels=0.0;FS=1.176;HRun=0;HaplotypeScore=3.2874;MQ=58.51;MQ0=0;MQRankSum=-0.738;QD=12.65;ReadPosRankSum=0.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:52,42:94:99:1219,0,1466
4    3590588    rs73199385    A    C    1384.70    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=108;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=1.7621;MQ=58.71;MQ0=0;MQRankSum=-0.022;QD=12.82;ReadPosRankSum=0.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:61,47:108:99:1415,0,1927
4    3590683    rs62272966    T    G    1795.20    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.807;DB;DP=196;Dels=0.0;FS=1.835;HRun=1;HaplotypeScore=7.1365;MQ=58.84;MQ0=0;MQRankSum=-0.307;QD=9.11;ReadPosRankSum=1.057;SNPEFF_AMINO_ACID_CHANGE=P56;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3590661_3590824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:123,73:196:99:1825,0,3843
4    3590711    rs62272967    G    T    1771.27    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.928;DB;DP=186;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4573;MQ=58.9;MQ0=0;MQRankSum=-1.484;QD=9.52;ReadPosRankSum=0.01;SNPEFF_AMINO_ACID_CHANGE=V66L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3590661_3590824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:115,71:186:99:1801,0,3583
4    3590730    rs62272968    G    A    1746.48    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=158;Dels=0.0;FS=3.263;HRun=0;HaplotypeScore=3.4987;MQ=58.7;MQ0=0;MQRankSum=0.431;QD=11.05;ReadPosRankSum=-1.107;SNPEFF_AMINO_ACID_CHANGE=W72*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_4_3590661_3590824;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:92,66:158:99:1776,0,2821
4    3590817    rs62272969    T    C    409.84    HaplotypeScoreFilter13    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.841;DB;DP=48;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=96.6508;MQ=57.09;MQ0=0;MQRankSum=-0.653;QD=8.54;ReadPosRankSum=-1.145;SNPEFF_AMINO_ACID_CHANGE=M101T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3590661_3590824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:27,21:48:99:440,0,823
4    3590823    rs34083130    GACAC    G    1064.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=332.0647;IndelType=D;MQ=57.99;MQ0=0;MQRankSum=0.449;QD=24.75;ReadPosRankSum=-0.071;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_3590661_3590824;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    1/1:12,25:43:2.03:1103,2,0
4    3590878    rs62272970    C    T    215.06    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=1.84;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=56.55;MQ0=0;MQRankSum=-1.84;QD=8.6;ReadPosRankSum=-0.255;SNPEFF_AMINO_ACID_CHANGE=H121Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3590827_3592170;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:16,9:25:99:245,0,499
4    3590911    rs34447251    A    C    56.87    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.19;MQ0=0;MQRankSum=0.231;QD=4.06;ReadPosRankSum=-0.849;SNPEFF_AMINO_ACID_CHANGE=R132;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3590827_3592170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-368B9.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404649    GT:AD:DP:GQ:PL    0/1:9,4:14:86.86:87,0,331
4    3769500    rs111546772    C    T    247.10    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=33;Dels=0.0;FS=4.27;HRun=0;HaplotypeScore=0.7887;MQ=58.59;MQ0=0;MQRankSum=-0.21;QD=7.49;ReadPosRankSum=-0.401;SNPEFF_AMINO_ACID_CHANGE=G389;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_3768125_3770251;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330055    GT:AD:DP:GQ:PL    0/1:22,11:33:99:277,0,641
4    3769798    .    T    TTCCCAGAGACCCGGGGAGCTC    3088.61    PASS    AC=2;AF=1.00;AN=2;DP=20;FS=0.0;HRun=0;HaplotypeScore=247.5011;IndelType=I;MQ=41.11;MQ0=0;QD=154.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509482    GT:AD:DP:GQ:PL    1/1:12,5:20:39.13:3131,39,0
4    3891180    .    A    G    179.24    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.119;DP=87;Dels=0.0;FS=3.216;HRun=0;HaplotypeScore=2.4385;MQ=19.63;MQ0=39;MQRankSum=-2.766;QD=2.06;ReadPosRankSum=-1.049;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR4D12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505943    GT:AD:DP:GQ:PL    0/1:58,29:87:99:209,0,535
4    3891609    rs75545558    G    A    164.42    MQFilter40;QDFilter2    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=201;Dels=0.0;FS=5.797;HRun=0;HaplotypeScore=0.7887;MQ=27.64;MQ0=82;MQRankSum=-5.659;QD=0.82;ReadPosRankSum=1.886;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR4D12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505943    GT:AD:DP:GQ:PL    0/1:112,89:201:99:194,0,2461
4    3903694    rs28513821    G    A    112.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.52;MQ0=0;QD=22.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E84P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398413    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
4    3903776    rs111824065    AAAAAC    A    399.95    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=147.7524;IndelType=D;MQ=47.68;MQ0=0;MQRankSum=1.107;QD=21.05;ReadPosRankSum=0.144;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E84P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398413    GT:AD:DP:GQ:PL    0/1:10,8:19:99:439,0,486
4    3903945    rs62289210    A    G    1395.23    MQFilter40    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.767;DB;DP=129;Dels=0.0;FS=18.717;HRun=0;HaplotypeScore=0.9665;MQ=37.42;MQ0=10;MQRankSum=0.077;QD=10.82;ReadPosRankSum=0.331;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E84P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398413    GT:AD:DP:GQ:PL    0/1:69,60:129:99:1425,0,1616
4    3923309    rs58937542    A    T    79.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=11.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513501    GT:AD:DP:GQ:PL    0/1:4,3:7:99:109,0,110
4    3923372    rs7441116    G    C    199.25    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.977;DB;DP=18;Dels=0.0;FS=3.256;HRun=2;HaplotypeScore=0.734;MQ=56.82;MQ0=0;MQRankSum=-1.111;QD=11.07;ReadPosRankSum=1.644;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513501    GT:AD:DP:GQ:PL    0/1:10,8:18:99:229,0,163
4    3923398    rs7440271    C    T    290.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.39;MQ0=0;MQRankSum=-1.436;QD=11.19;ReadPosRankSum=-2.051;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513501    GT:AD:DP:GQ:PL    0/1:13,13:26:99:321,0,353
4    3923407    rs7435383    A    G    381.51    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.41;MQ0=0;MQRankSum=-1.224;QD=15.26;ReadPosRankSum=-3.128;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513501    GT:AD:DP:GQ:PL    0/1:12,13:25:99:412,0,345
4    3938249    rs35297066    C    T    151.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.72;MQ0=0;MQRankSum=0.573;QD=16.85;ReadPosRankSum=-1.422;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC226119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502317    GT:AD:DP:GQ:PL    0/1:3,6:9:94.27:182,0,94
4    3943984    rs7695071    C    T    33.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.72;MQ0=0;MQRankSum=0.0;QD=5.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:4,2:6:63.20:63,0,132
4    3944020    rs7680741    T    C    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=55.72;MQ0=0;MQRankSum=0.72;QD=5.91;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:4,2:6:65.47:65,0,125
4    3944026    rs7676066    T    G    34.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.72;MQ0=0;MQRankSum=1.231;QD=5.83;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:3,2:6:64.96:65,0,102
4    3944184    rs34583792    C    T    1022.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.29;MQ0=3;QD=29.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    1/1:0,35:35:81.25:1056,81,0
4    3944253    rs34274024    T    C    608.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=35.51;MQ0=4;QD=20.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC226119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502317    GT:AD:DP:GQ:PL    1/1:0,30:30:60.07:642,60,0
4    3944379    rs149909307    G    T    105.22    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=17;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=47.72;MQ0=0;MQRankSum=-0.049;QD=6.19;ReadPosRankSum=0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC226119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502317    GT:AD:DP:GQ:PL    0/1:10,7:17:99:135,0,287
4    3944888    rs6845024    T    C    425.94    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.028;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.78;MQ0=0;MQRankSum=-2.872;QD=16.38;ReadPosRankSum=0.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC226119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502317    GT:AD:DP:GQ:PL    0/1:10,16:26:99:456,0,322
4    3944989    rs34505493    C    T    3702.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=56.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC226119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502317    GT:AD:DP:GQ:PL    1/1:1,109:110:99:3703,289,0
4    3949374    rs6824627    C    T    344.65    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.718;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.96;MQ0=0;MQRankSum=0.092;QD=12.31;ReadPosRankSum=0.691;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86EP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504375    GT:AD:DP:GQ:PL    0/1:15,13:28:99:375,0,544
4    3949637    rs6824997    G    A    863.74    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.107;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.54;MQ0=0;MQRankSum=-0.54;QD=9.93;ReadPosRankSum=-0.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86EP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504375    GT:AD:DP:GQ:PL    0/1:53,34:87:99:894,0,1581
4    3950060    rs10937848    C    A    656.21    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.527;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7646;MQ=59.17;MQ0=0;MQRankSum=1.049;QD=11.72;ReadPosRankSum=0.896;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:33,23:56:99:686,0,1108
4    3950126    rs62289009    T    C    403.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:437,36,0
4    3951121    rs71636744    T    TTGTC    1694.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=70.4843;IndelType=I;MQ=28.94;MQ0=0;QD=70.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    1/1:2,20:23:66.23:1737,66,0
4    3951471    rs34596174    A    G    566.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:600,45,0
4    3952730    rs9684871    T    C    734.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=36.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:767,57,0
4    3954873    rs61082048    A    T    1743.05    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.852;DB;DP=129;Dels=0.0;FS=8.221;HRun=1;HaplotypeScore=2.5778;MQ=56.97;MQ0=0;MQRankSum=0.35;QD=13.51;ReadPosRankSum=-0.717;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:67,62:129:99:1773,0,1978
4    3954878    rs58515458    T    C    1807.53    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=3.772;DB;DP=132;Dels=0.0;FS=9.659;HRun=1;HaplotypeScore=0.5784;MQ=57.14;MQ0=0;MQRankSum=1.068;QD=13.69;ReadPosRankSum=-0.535;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:69,63:132:99:1838,0,1954
4    3955064    rs34343469    G    A    155.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=14;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.9665;MQ=54.99;MQ0=0;MQRankSum=1.406;QD=11.1;ReadPosRankSum=0.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:7,7:14:99:185,0,230
4    3955090    rs34468893    G    A    105.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=54.47;MQ0=0;MQRankSum=0.922;QD=13.24;ReadPosRankSum=-0.421;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,132
4    3955138    rs13116132    T    G    138.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=47.08;MQ0=0;MQRankSum=-0.736;QD=23.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    1/1:1,5:6:15.03:171,15,0
4    3955146    rs55688351    A    G    86.46    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.04;MQ0=0;MQRankSum=-0.731;QD=17.29;ReadPosRankSum=-0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:1,4:5:27.20:116,0,27
4    3955244    rs35383148    G    T    39.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.24;MQ0=0;QD=19.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
4    3957037    rs140555085    G    A    101.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=11.761;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=12.71;ReadPosRankSum=0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:4,4:8:89.61:132,0,90
4    3957091    rs12186334    C    T    111.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.754;QD=13.93;ReadPosRankSum=1.754;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC226119.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281228    GT:AD:DP:GQ:PL    0/1:4,4:8:61.07:141,0,61
4    4128302    rs9685296    T    G    115.95    MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=1.198;DB;DP=31;Dels=0.0;FS=11.885;HRun=1;HaplotypeScore=0.0;MQ=37.85;MQ0=0;MQRankSum=-0.637;QD=3.74;ReadPosRankSum=0.586;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509361    GT:AD:DP:GQ:PL    0/1:23,7:31:99:146,0,593
4    4128483    .    A    G    77.01    MQFilter40;QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DP=94;Dels=0.0;FS=6.188;HRun=0;HaplotypeScore=0.0;MQ=28.88;MQ0=15;MQRankSum=0.159;QD=0.82;ReadPosRankSum=1.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509361    GT:AD:DP:GQ:PL    0/1:75,18:94:99:107,0,1490
4    4128688    .    T    C    581.84    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.193;DP=63;Dels=0.0;FS=7.597;HRun=0;HaplotypeScore=0.0;MQ=17.28;MQ0=27;MQRankSum=0.385;QD=9.24;ReadPosRankSum=-1.733;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509361    GT:AD:DP:GQ:PL    1/1:1,62:63:41.41:615,41,0
4    4128926    .    T    C    1836.09    MQFilter40    AC=2;AF=1.00;AN=2;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.48;MQ0=35;QD=15.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509361    GT:AD:DP:GQ:PL    1/1:0,115:115:99:1869,186,0
4    4132382    rs2887346    A    G    103.07    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=9.37;ReadPosRankSum=-0.597;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509361    GT:AD:DP:GQ:PL    0/1:7,4:11:99:133,0,232
4    4147275    rs11723509    C    T    311.78    HaplotypeScoreFilter13    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=47;Dels=0.0;FS=6.054;HRun=1;HaplotypeScore=15.9027;MQ=41.45;MQ0=5;MQRankSum=-5.417;QD=6.63;ReadPosRankSum=-0.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505679    GT:AD:DP:GQ:PL    0/1:23,24:47:99:342,0,690
4    4147282    .    TG    T    358.14    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=4.315;DP=39;FS=3.344;HRun=4;HaplotypeScore=166.1743;IndelType=D;MQ=43.3;MQ0=5;MQRankSum=-3.851;QD=7.62;ReadPosRankSum=-0.046;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505679    GT:AD:DP:GQ:PL    0/1:25,22:39:99:397,0,803
4    4147408    rs11726259    T    G    579.36    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.058;DB;DP=57;Dels=0.0;FS=7.906;HRun=0;HaplotypeScore=0.5784;MQ=51.11;MQ0=5;MQRankSum=-3.666;QD=10.16;ReadPosRankSum=-0.258;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505679    GT:AD:DP:GQ:PL    0/1:29,28:57:99:609,0,947
4    4147443    rs11736807    G    A    384.87    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.002;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=52.38;MQ0=5;MQRankSum=-2.002;QD=8.55;ReadPosRankSum=-0.814;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505679    GT:AD:DP:GQ:PL    0/1:24,21:45:99:415,0,822
4    4147548    rs116628773    A    G    100.76    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.133;DB;DP=14;Dels=0.0;FS=4.15;HRun=0;HaplotypeScore=0.9578;MQ=58.84;MQ0=0;MQRankSum=-1.333;QD=7.2;ReadPosRankSum=0.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505679    GT:AD:DP:GQ:PL    0/1:9,5:14:99:131,0,256
4    4147637    rs7697947    C    A    36.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.8;MQ0=0;MQRankSum=1.026;QD=9.04;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505679    GT:AD:DP:GQ:PL    0/1:2,2:4:66.17:66,0,67
4    4149476    rs10937715    A    G    80.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.4;MQ0=1;QD=8.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505679    GT:AD:DP:GQ:PL    1/1:0,9:9:12.01:113,12,0
4    4176343    rs62290061    T    A    65.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.0;MQ=46.66;MQ0=0;MQRankSum=0.727;QD=16.4;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503910    GT:AD:DP:GQ:PL    0/1:1,3:4:20.47:96,0,20
4    4176523    .    G    GA    393.75    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.924;DP=30;FS=2.944;HRun=10;HaplotypeScore=84.2696;IndelType=I;MQ=51.11;MQ0=1;MQRankSum=0.606;QD=12.7;ReadPosRankSum=-1.344;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503910    GT:AD:DP:GQ:PL    0/1:16,14:30:99:433,0,168
4    4176709    rs35002176    A    ACT    4578.32    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.323;DB;DP=99;FS=0.0;HRun=0;HaplotypeScore=377.5227;IndelType=I;MQ=34.38;MQ0=2;MQRankSum=-1.033;QD=44.02;ReadPosRankSum=0.591;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324I10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503910    GT:AD:DP:GQ:PL    0/1:18,84:99:23.45:4578,0,23
4    4190792    rs2920255    A    C    159.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.42;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296358    GT:AD:DP:GQ:PL    0/1:7,7:14:99:190,0,219
4    4198815    rs73209135    C    G    466.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.723;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.578;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=16.68;ReadPosRankSum=0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296358    GT:AD:DP:GQ:PL    0/1:14,14:28:99:497,0,504
4    4199083    rs34666677    T    G    730.31    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.281;DB;DP=71;Dels=0.0;FS=0.939;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.78;QD=10.29;ReadPosRankSum=0.47;SNPEFF_AMINO_ACID_CHANGE=K493T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4198893_4199830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296358    GT:AD:DP:GQ:PL    0/1:40,31:71:99:760,0,1279
4    4199634    rs2916414    A    T    773.99    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=15.18;ReadPosRankSum=1.253;SNPEFF_AMINO_ACID_CHANGE=D309E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4198893_4199830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296358    GT:AD:DP:GQ:PL    0/1:25,26:51:99:804,0,816
4    4204299    rs2920182    T    C    682.89    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=49;Dels=0.0;FS=4.551;HRun=2;HaplotypeScore=0.0;MQ=57.32;MQ0=0;MQRankSum=-0.01;QD=13.94;ReadPosRankSum=0.613;SNPEFF_AMINO_ACID_CHANGE=G202;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4204175_4204305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296358    GT:AD:DP:GQ:PL    0/1:22,27:49:99:713,0,678
4    4207690    rs115174592    G    A    181.17    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=25.88;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296358    GT:AD:DP:GQ:PL    0/1:1,6:7:18.94:211,0,19
4    4239402    rs62286912    T    C    87.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254742    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
4    4239516    rs62286913    C    T    232.31    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9861;MQ=48.01;MQ0=0;MQRankSum=-3.799;QD=11.62;ReadPosRankSum=-0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254742    GT:AD:DP:GQ:PL    0/1:9,11:20:99:262,0,326
4    4239539    rs62286914    C    T    56.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DB;DP=21;Dels=0.0;FS=6.532;HRun=1;HaplotypeScore=0.0;MQ=51.58;MQ0=2;MQRankSum=-3.027;QD=2.71;ReadPosRankSum=-0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254742    GT:AD:DP:GQ:PL    0/1:14,7:21:86.94:87,0,526
4    4239587    rs62286915    G    T    162.41    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.885;DB;DP=31;Dels=0.0;FS=45.405;HRun=1;HaplotypeScore=2.995;MQ=47.96;MQ0=3;MQRankSum=-4.062;QD=5.24;ReadPosRankSum=0.77;SNPEFF_AMINO_ACID_CHANGE=V134;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4239554_4239662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM128;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254742    GT:AD:DP:GQ:PL    0/1:20,11:31:99:192,0,595
4    4239697    .    C    A    34.53    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.29;MQ0=0;MQRankSum=-2.827;QD=1.44;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254742    GT:AD:DP:GQ:PL    0/1:20,4:24:64.52:65,0,690
4    4249483    rs2916466    C    T    295.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_4249328_4249939;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM128;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254742    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:329,27,0
4    4275976    rs11723469    A    C    916.03    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.061;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.6323;MQ=58.45;MQ0=0;MQRankSum=0.208;QD=12.21;ReadPosRankSum=-0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343470    GT:AD:DP:GQ:PL    0/1:33,42:75:99:946,0,825
4    4275986    rs11723471    A    C    889.24    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=3.119;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.4361;MQ=58.6;MQ0=0;MQRankSum=0.218;QD=10.71;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343470    GT:AD:DP:GQ:PL    0/1:37,46:83:99:919,0,642
4    4276132    rs7376390    T    C    7242.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=232;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.4;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=H265R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4276094_4276496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343470    GT:AD:DP:GQ:PL    1/1:0,232:232:99:7242,575,0
4    4281570    rs12644991    C    T    34.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.98;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513174    GT:AD:DP:GQ:PL    0/1:4,3:7:64.82:65,0,124
4    4281616    rs12646164    A    C    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513174    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:70,0,32
4    4283676    rs2272738    G    A    1792.86    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.171;DB;DP=139;Dels=0.0;FS=1.759;HRun=0;HaplotypeScore=1.3123;MQ=59.33;MQ0=0;MQRankSum=0.29;QD=12.9;ReadPosRankSum=-0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343470    GT:AD:DP:GQ:PL    0/1:73,66:139:99:1823,0,2210
4    4285221    rs2980214    A    C    242.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343470    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
4    4285265    rs4688927    T    A    103.46    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=9.41;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343470    GT:AD:DP:GQ:PL    0/1:6,5:11:99:133,0,221
4    4285545    rs2916439    A    C    179.03    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.529;QD=14.92;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LYAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343470    GT:AD:DP:GQ:PL    0/1:5,7:12:99:209,0,175
4    4301967    rs73195806    T    G    133.36    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.12;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337872    GT:AD:DP:GQ:PL    0/1:5,6:11:99:163,0,176
4    4304337    rs2916382    C    T    2105.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=A258;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4303716_4304818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB49;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337872    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2138,157,0
4    4304522    rs2920217    A    C    576.53    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.285;DB;DP=57;Dels=0.0;FS=1.103;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=10.11;ReadPosRankSum=-1.642;SNPEFF_AMINO_ACID_CHANGE=Y320S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4303716_4304818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337872    GT:AD:DP:GQ:PL    0/1:36,21:57:99:607,0,1168
4    4317464    rs184058190    C    T    472.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.02;DB;DP=34;Dels=0.0;FS=3.192;HRun=1;HaplotypeScore=0.8941;MQ=59.45;MQ0=0;MQRankSum=0.642;QD=13.9;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337872    GT:AD:DP:GQ:PL    0/1:17,17:34:99:503,0,486
4    4322275    rs873923    A    G    32.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.42;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337872    GT:AD:DP:GQ:PL    0/1:3,2:5:62.11:62,0,101
4    4411166    rs7654880    T    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110814.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397958    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
4    4411235    rs7686577    C    T    179    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=13.77;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110814.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397958    GT:AD:DP:GQ:PL    0/1:6,7:13:99:209,0,179
4    4411559    rs7655690    T    C    63.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=15.91;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110814.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397958    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:94,0,30
4    4422558    rs34931639    A    C    487.68    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.566;DB;DP=36;Dels=0.0;FS=6.315;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.579;QD=13.55;ReadPosRankSum=-0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110814.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397958    GT:AD:DP:GQ:PL    0/1:19,17:36:99:518,0,580
4    4425422    rs78893097    C    CAG    370.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=17.5316;IndelType=I;MQ=62.65;MQ0=0;QD=46.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110814.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397958    GT:AD:DP:GQ:PL    1/1:0,7:8:24.08:412,24,0
4    4436436    rs6825715    T    C    363.40    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=15.8;ReadPosRankSum=-1.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512780    GT:AD:DP:GQ:PL    0/1:10,13:23:99:393,0,353
4    4440439    rs28433883    T    C    77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.4;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306200    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:107,0,66
4    4460925    rs11729131    G    T    242.73    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.17;ReadPosRankSum=1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306200    GT:AD:DP:GQ:PL    0/1:7,8:16:99:273,0,235
4    4473216    rs6816884    G    A    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306200    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,71
4    4861974    rs34165410    C    T    184.38    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.154;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.154;QD=11.52;ReadPosRankSum=0.545;SNPEFF_AMINO_ACID_CHANGE=G116;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4861393_4862095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382723    GT:AD:DP:GQ:PL    0/1:7,8:16:99:214,0,202
4    4864276    rs10213148    A    G    186.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=18.67;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=I40V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4864155_4864335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000468421    GT:AD:DP:GQ:PL    0/1:4,6:10:99:217,0,132
4    4864316    .    T    C    398.98    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.995;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9992;MQ=59.33;MQ0=0;MQRankSum=-0.024;QD=14.25;ReadPosRankSum=0.073;SNPEFF_AMINO_ACID_CHANGE=L53P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_4864155_4864335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000468421    GT:AD:DP:GQ:PL    0/1:14,13:27:99:429,0,482
4    4864381    rs1042484    A    G    511.55    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.476;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.7;MQ0=0;MQRankSum=-0.232;QD=8.25;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382723    GT:AD:DP:GQ:PL    0/1:41,21:62:99:542,0,1356
4    5015009    rs4689973    C    T    317.67    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=33;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=1.5717;MQ=59.3;MQ0=0;MQRankSum=-0.019;QD=9.63;ReadPosRankSum=-0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307746    GT:AD:DP:GQ:PL    0/1:21,12:33:99:348,0,632
4    5015167    rs6446309    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307746    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    5016841    rs6847131    G    T    298.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307746    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:331,24,0
4    5016972    rs73198523    T    C    45.28    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.12;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307746    GT:AD:DP:GQ:PL    0/1:7,4:11:75.27:75,0,256
4    5018702    rs11724788    G    A    982.08    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.183;DB;DP=60;Dels=0.0;FS=11.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.069;QD=16.37;ReadPosRankSum=1.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307746    GT:AD:DP:GQ:PL    0/1:25,35:60:99:1012,0,754
4    5020818    rs73198530    T    C    35.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307746    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
4    5021008    rs67468870    C    T    203.68    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=15.67;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307746    GT:AD:DP:GQ:PL    0/1:5,8:13:99:234,0,102
4    5128650    rs895679    T    C    134.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282908    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
4    5170214    rs3749567    C    T    183.62    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.0;QD=15.3;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282908    GT:AD:DP:GQ:PL    0/1:5,7:12:99:214,0,176
4    5418539    rs168985    C    T    431.18    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.65;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.45;QD=21.56;ReadPosRankSum=0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282908    GT:AD:DP:GQ:PL    0/1:4,16:20:99:461,0,114
4    5469810    rs2301855    T    C    366.79    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.115;DB;DP=44;Dels=0.0;FS=1.391;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=1.516;QD=8.34;ReadPosRankSum=-2.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505508    GT:AD:DP:GQ:PL    0/1:29,15:44:99:397,0,808
4    5469916    rs41268643    G    A    222.99    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=17.15;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505508    GT:AD:DP:GQ:PL    0/1:5,8:13:99:253,0,167
4    5500511    rs13116133    A    C    126.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282908    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
4    5577884    rs6840591    T    C    757.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    1/1:0,24:24:63.17:791,63,0
4    5642161    rs751841    A    G    874.91    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.658;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.824;QD=16.83;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    0/1:22,30:52:99:905,0,704
4    5664656    rs13125075    A    T    398.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.52;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:431,33,0
4    5665081    rs113939285    AG    A    404.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.665;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=51.3643;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=-0.193;QD=20.23;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    0/1:8,12:20:99:444,0,324
4    5667133    rs75886611    G    A    102.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.29;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    0/1:4,6:10:99:133,0,128
4    5667134    rs79284218    C    A    102.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.29;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    0/1:4,6:10:99:133,0,139
4    5686924    rs957727    G    A    189.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:222,18,0
4    5686967    rs957726    C    T    434.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:468,36,0
4    5687257    rs13129960    G    A    402.60    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;MQRankSum=-0.58;QD=18.3;ReadPosRankSum=-0.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    0/1:8,14:22:99:433,0,264
4    5687263    rs998092    A    G    624.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:658,48,0
4    5690902    rs4689278    T    C    405.09    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=44;Dels=0.0;FS=3.061;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.329;QD=9.21;ReadPosRankSum=0.695;SNPEFF_AMINO_ACID_CHANGE=S150G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_5690884_5691070;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    0/1:28,16:44:99:435,0,897
4    5691199    rs10937661    C    T    172.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
4    5693112    rs35705473    C    T    187.05    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.46;MQ0=0;MQRankSum=-1.297;QD=7.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    0/1:15,11:26:99:217,0,532
4    5696383    rs11936402    T    C    32.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.0;QD=6.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EVC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310917    GT:AD:DP:GQ:PL    0/1:3,2:5:62.53:63,0,73
4    5730954    rs2276875    G    A    322.91    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.669;DB;DP=21;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=15.38;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    0/1:11,10:21:99:353,0,318
4    5733068    rs1871586    G    T    549.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.059;DB;DP=38;Dels=0.0;FS=2.191;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.562;QD=14.47;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    0/1:19,19:38:99:580,0,513
4    5735303    rs2291155    C    T    170.09    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=15.46;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    0/1:4,7:11:68.03:200,0,68
4    5735316    rs36091422    G    C    159.95    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=14.54;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    0/1:4,7:11:74.40:190,0,74
4    5743400    rs116166266    T    C    295.67    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=23;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.077;QD=12.86;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    0/1:12,11:23:99:326,0,427
4    5743509    rs6446393    C    T    1507.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=L257;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_5743443_5743541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1540,114,0
4    5743512    rs6414624    T    C    1510.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=30.21;SNPEFF_AMINO_ACID_CHANGE=Y258H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_5743443_5743541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1544,114,0
4    5746915    .    TC    T    1459.04    PASS    AC=2;AF=1.00;AN=2;DP=44;FS=0.0;HRun=1;HaplotypeScore=339.7541;IndelType=D;MQ=53.09;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506216    GT:AD:DP:GQ:PL    1/1:9,36:44:99:1501,127,0
4    5746917    .    TTC    T    1541.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.66;DP=45;FS=0.0;HRun=0;HaplotypeScore=363.564;IndelType=D;MQ=53.25;MQ0=0;MQRankSum=-0.068;QD=33.51;ReadPosRankSum=1.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506216    GT:AD:DP:GQ:PL    1/1:9,37:45:99:1583,124,0
4    5747078    rs2286342    A    G    660.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=28.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506216    GT:AD:DP:GQ:PL    1/1:0,23:23:57.12:693,57,0
4    5749807    rs56193413    C    T    234.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506216    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:267,24,0
4    5749814    .    C    CGTTTG    1058.99    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=0;HaplotypeScore=69.2777;IndelType=I;MQ=29.0;MQ0=0;QD=88.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:3,9:12:36.12:1101,36,0
4    5749961    rs4688962    G    C    868.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=L342;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_5749875_5750033;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:901,69,0
4    5750084    rs4688961    A    T    255.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
4    5755373    rs7660793    G    C    1240.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:0,35:35:96.30:1274,96,0
4    5755542    rs2302075    C    A    2161.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=T449K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_5755512_5755660;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2195,159,0
4    5798627    rs2291152    G    A    556.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.16;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:589,45,0
4    5803669    rs1031919    T    C    810.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=27.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506240    GT:AD:DP:GQ:PL    1/1:0,30:30:69.20:843,69,0
4    5803904    rs1031918    C    T    540.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506240    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:574,42,0
4    5806366    rs1552057    T    C    566.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.578;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.771;QD=31.47;ReadPosRankSum=-0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515113    GT:AD:DP:GQ:PL    1/1:1,17:18:8.94:598,9,0
4    5806712    rs62297684    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515113    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    5812195    rs2279250    A    G    268.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=24.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    1/1:0,10:11:24.06:302,24,0
4    5812566    rs2279247    A    G    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264956    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
4    5812778    rs2291151    G    A    186.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=18.61;ReadPosRankSum=0.365;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506216    GT:AD:DP:GQ:PL    0/1:4,6:10:99:216,0,136
4    5830414    rs6818391    T    C    362.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:395,33,0
4    5837871    rs3815264    A    G    427.96    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=24;Dels=0.0;FS=3.388;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=17.83;ReadPosRankSum=1.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:11,13:24:99:458,0,386
4    5838347    rs2240494    G    A    187.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=18.74;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:4,6:10:99:217,0,110
4    5838513    rs12331    C    G    524.26    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=45;Dels=0.0;FS=1.147;HRun=1;HaplotypeScore=2.7295;MQ=59.49;MQ0=0;MQRankSum=0.54;QD=11.65;ReadPosRankSum=0.517;SNPEFF_AMINO_ACID_CHANGE=T361;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_5838492_5838633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512574    GT:AD:DP:GQ:PL    0/1:23,22:45:99:554,0,579
4    5841649    rs13144677    C    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
4    5842856    rs3774885    A    G    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=7.12;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:3,2:5:65.61:66,0,97
4    5843196    rs2286283    T    G    929.04    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=16.89;ReadPosRankSum=1.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:25,30:55:99:959,0,762
4    5843266    rs2286282    T    C    65.22    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=4.66;ReadPosRankSum=-1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:10,4:14:95.22:95,0,369
4    5843318    rs2286281    G    T    33.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:3,2:5:63.58:64,0,108
4    5843328    rs2286280    T    C    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.48;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,106
4    5851343    rs2276877    C    T    159.95    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=26.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:1,5:6:20.52:190,0,21
4    5853113    .    A    ACTCCT    4696.39    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.277;DP=117;FS=0.713;HRun=0;HaplotypeScore=484.6026;IndelType=I;MQ=57.55;MQ0=0;MQRankSum=-0.802;QD=40.14;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    0/1:68,47:117:99:4696,0,4078
4    5863032    rs13130069    G    A    419.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324989    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:453,33,0
4    5966618    rs79164097    A    G    91.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
4    5966665    rs7442168    G    A    200.74    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=28.68;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    0/1:1,6:7:12.37:231,0,12
4    5966801    rs6839295    T    C    692.76    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.649;DB;DP=45;Dels=0.0;FS=2.851;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.102;QD=15.39;ReadPosRankSum=1.172;SNPEFF_AMINO_ACID_CHANGE=I177V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_5966751_5966872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    0/1:21,24:45:99:723,0,606
4    5966905    rs6857900    C    T    469.87    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=36;Dels=0.0;FS=7.574;HRun=0;HaplotypeScore=1.5661;MQ=59.36;MQ0=0;MQRankSum=-0.81;QD=13.05;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    0/1:19,16:36:99:500,0,531
4    5966943    rs6839512    T    C    280.92    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.344;DB;DP=26;Dels=0.0;FS=2.944;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.029;QD=10.8;ReadPosRankSum=-0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    0/1:16,10:26:99:311,0,543
4    5969113    rs9997727    G    A    1035.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1069,81,0
4    5969235    rs7690750    A    G    895.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    1/1:0,30:30:69.20:929,69,0
4    5969252    rs7690889    A    G    934.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:967,75,0
4    5969292    rs6446420    C    A    538.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:572,45,0
4    5969303    rs6446421    T    A    598.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:631,48,0
4    5969364    rs6446422    T    C    61.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:93,9,0
4    5975378    rs4516655    G    A    1248.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.798;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6518;MQ=59.52;MQ0=0;MQRankSum=0.302;QD=13.01;ReadPosRankSum=-0.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    0/1:48,48:96:99:1279,0,1426
4    5977566    rs4689289    C    A    363.56    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.414;DB;DP=26;Dels=0.0;FS=3.16;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=13.98;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    0/1:12,14:26:99:394,0,424
4    5981789    rs28572583    G    A    86.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=8.61;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    0/1:6,4:10:99:116,0,213
4    5982108    rs6821688    T    C    30.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=3.07;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324058    GT:AD:DP:GQ:PL    0/1:6,4:10:60.70:61,0,218
4    5990110    rs4689287    C    A    130.10    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=22;Dels=0.0;FS=2.046;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.99;QD=5.91;ReadPosRankSum=0.307;SNPEFF_AMINO_ACID_CHANGE=Q463H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_5990074_5991545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531445    GT:AD:DP:GQ:PL    0/1:14,8:22:99:160,0,464
4    6050759    rs60586285    T    G    206.34    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.634;QD=10.86;ReadPosRankSum=-0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282924    GT:AD:DP:GQ:PL    0/1:12,7:19:99:236,0,397
4    6051288    rs4346592    A    G    66.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282924    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:98,9,0
4    6086694    rs67017941    T    TA    107.99    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.0;HRun=27;HaplotypeScore=545.7255;IndelType=I;MQ=46.87;MQ0=0;QD=1.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282924    GT:AD:DP:GQ:PL    1/1:78,12:91:29.30:150,29,0
4    6087057    rs7666743    C    T    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=22.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282924    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:167,12,0
4    6087371    rs73196084    G    A    1220.90    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.511;DB;DP=88;Dels=0.0;FS=5.098;HRun=3;HaplotypeScore=3.1598;MQ=59.74;MQ0=0;MQRankSum=0.534;QD=13.87;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282924    GT:AD:DP:GQ:PL    0/1:45,43:88:99:1251,0,1502
4    6114242    rs73198064    T    C    60.64    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=7.58;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282924    GT:AD:DP:GQ:PL    0/1:5,3:8:90.63:91,0,177
4    6292799    rs5018647    A    C    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.6;MQ0=0;QD=15.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506588    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:124,9,0
4    6292818    rs5018648    C    G    245.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.21;MQ0=0;QD=27.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506588    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:278,21,0
4    6292909    rs9998519    C    T    638.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506588    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:671,51,0
4    6292915    rs10010131    A    G    731.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;QD=31.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506588    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:764,57,0
4    6293696    rs1801213    C    G    137.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.42;SNPEFF_AMINO_ACID_CHANGE=R228;SNPEFF_CODON_CHANGE=cgC/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6293644_6293724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226760    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:170,15,0
4    6293838    rs11729672    A    G    87.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506588    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
4    6293855    rs11725494    C    T    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
4    6302519    rs1801212    G    A    1911.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.57;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=V333I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6302384_6304992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226760    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1944,144,0
4    6302707    rs1801206    C    T    3357.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=V395;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6302384_6304992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226760    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3357,259,0
4    6303022    rs1801214    C    T    1678.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_AMINO_ACID_CHANGE=N500;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6302384_6304992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226760    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1712,126,0
4    6303354    rs734312    G    A    2353.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=R611H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6302384_6304992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226760    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2386,178,0
4    6303955    rs1046314    G    A    1207.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.72;MQ0=0;QD=30.96;SNPEFF_AMINO_ACID_CHANGE=K189;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6303196_6304670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540337    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1240,96,0
4    6304087    rs1046316    A    G    1230.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.46;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=S233;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6303196_6304670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540337    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1264,96,0
4    6304242    rs1046317    T    C    656.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=27.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513395    GT:AD:DP:GQ:PL    1/1:0,23:24:57.14:690,57,0
4    6304286    rs1046319    C    T    406.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513395    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:439,33,0
4    6304344    rs1046320    G    A    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513395    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    6325018    rs3796402    A    T    947.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.85;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335585    GT:AD:DP:GQ:PL    1/1:0,28:28:81.22:981,81,0
4    6325086    rs3796403    G    A    858.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=I412;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6324773_6325320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515571    GT:AD:DP:GQ:PL    1/1:0,27:27:69.18:891,69,0
4    6335186    rs4689405    C    T    503.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513943    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:536,39,0
4    6335203    rs10937722    C    T    217.78    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=12.1;ReadPosRankSum=-1.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513943    GT:AD:DP:GQ:PL    0/1:10,8:18:99:248,0,325
4    6374189    rs6837903    A    G    731.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.43;MQ0=0;QD=29.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509917    GT:AD:DP:GQ:PL    1/1:0,25:25:66.14:765,66,0
4    6374230    rs35520578    C    CA    628.06    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.655;DB;DP=36;FS=0.0;HRun=1;HaplotypeScore=132.6279;IndelType=I;MQ=60.6;MQ0=0;MQRankSum=-1.369;QD=17.45;ReadPosRankSum=0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509917    GT:AD:DP:GQ:PL    0/1:18,17:36:99:667,0,452
4    6374468    rs12511721    T    C    383.05    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=33;Dels=0.0;FS=6.743;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.302;QD=11.61;ReadPosRankSum=-2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335585    GT:AD:DP:GQ:PL    0/1:17,16:33:99:413,0,604
4    6377530    rs4688997    C    G    473.04    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.595;DB;DP=36;Dels=0.0;FS=1.407;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.398;QD=13.14;ReadPosRankSum=-0.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507028    GT:AD:DP:GQ:PL    0/1:16,20:36:99:503,0,495
4    6377534    rs4688998    A    G    1152.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507028    GT:AD:DP:GQ:PL    1/1:0,37:37:96.27:1186,96,0
4    6377713    rs4234738    G    C    983.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507028    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:1016,75,0
4    6379992    rs6835336    T    C    381.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507028    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:414,33,0
4    6385066    rs17721365    T    G    309.91    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=14.09;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382599    GT:AD:DP:GQ:PL    0/1:12,10:22:99:340,0,371
4    6578487    rs4689485    A    G    604.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:638,45,0
4    6580283    rs3764809    A    G    257.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
4    6591015    rs3733605    C    T    738.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=38.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:771,57,0
4    6594827    rs10937747    A    G    347.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:381,33,0
4    6594947    rs2301796    A    C    307.34    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=44;Dels=0.0;FS=1.317;HRun=4;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.759;QD=6.99;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=Q243P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6594900_6595077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    0/1:31,13:44:99:337,0,818
4    6596360    rs2301795    G    A    862.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_AMINO_ACID_CHANGE=V269M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6596348_6596459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504248    GT:AD:DP:GQ:PL    1/1:0,28:28:66.21:895,66,0
4    6596515    rs4234761    C    T    174.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
4    6596552    rs2301793    C    T    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
4    6611813    rs4689487    T    C    370.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.997;DB;DP=36;Dels=0.0;FS=1.547;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=10.29;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504960    GT:AD:DP:GQ:PL    0/1:20,16:36:99:401,0,605
4    6619004    rs4234764    A    G    325.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:359,30,0
4    6619052    rs4689488    A    G    563.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9789;MQ=58.9;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285599    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:596,48,0
4    6619165    rs4689489    A    G    747.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_AMINO_ACID_CHANGE=L869;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6619107_6619219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504248    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:781,57,0
4    6619204    rs4689490    G    A    513.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_AMINO_ACID_CHANGE=V882;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6619107_6619219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504248    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:546,42,0
4    6621928    rs4234765    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510427    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    6622647    rs4234767    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510427    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
4    6623032    rs4234768    G    T    776.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510427    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:809,60,0
4    6698500    rs113431497    C    CTGAGCCTGAA    4949.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=192.4904;IndelType=I;MQ=32.56;MQ0=0;QD=145.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296370    GT:AD:DP:GQ:PL    1/1:10,23:34:99:4950,102,0
4    6698667    rs11734898    T    C    4718.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.5;MQ0=0;QD=31.67;SNPEFF_AMINO_ACID_CHANGE=D62;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6698620_6698896;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296370    GT:AD:DP:GQ:PL    1/1:0,149:149:99:4719,370,0
4    6698706    rs11733989    A    C    5477.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.44;MQ0=0;QD=33.2;SNPEFF_AMINO_ACID_CHANGE=I75;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_6698620_6698896;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296370    GT:AD:DP:GQ:PL    1/1:0,165:165:99:5477,424,0
4    6710702    rs4234779    A    T    39.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=19.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRFAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320848    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
4    6710735    rs4234780    A    C    77.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.07;MQ0=0;QD=25.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRFAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320848    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
4    6710739    rs4234781    C    T    74.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.07;MQ0=0;QD=24.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRFAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320848    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
4    6955922    rs4484301    C    G    151.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.05;MQ0=0;QD=12.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409757    GT:AD:DP:GQ:PL    1/1:0,12:12:18.01:185,18,0
4    6956134    rs11732898    T    C    921.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409757    GT:AD:DP:GQ:PL    1/1:0,32:32:81.23:955,81,0
4    6968942    rs9291126    C    T    788.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409757    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:822,63,0
4    7002803    rs2301817    C    T    363.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409757    GT:AD:DP:GQ:PL    1/1:0,11:12:33.09:396,33,0
4    7011858    rs2301820    C    G    133.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409757    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
4    7011892    rs2301821    C    A    48.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409757    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    7027041    rs6834102    C    T    560.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409757    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:593,48,0
4    7045657    rs6842659    C    A    36.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TADA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310074    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
4    7064003    rs142511035    A    AC    631.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=6;HaplotypeScore=61.3776;IndelType=I;MQ=60.57;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264954    GT:AD:DP:GQ:PL    1/1:1,18:19:54.17:674,54,0
4    7066052    rs2359011    T    G    75.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264954    GT:AD:DP:GQ:PL    1/1:0,8:8:12:108,12,0
4    7066053    rs2359012    A    C    75.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264954    GT:AD:DP:GQ:PL    1/1:0,8:8:12:108,12,0
4    7069441    rs7666504    A    G    84.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264954    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    7069606    rs2276969    G    A    190.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.92;MQ0=0;QD=27.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264954    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:223,18,0
4    7069804    rs3822270    C    A    423.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.84;MQ0=0;QD=32.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429301    GT:AD:DP:GQ:PL    1/1:0,13:13:36.06:457,36,0
4    7069901    rs3822269    T    C    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429301    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
4    7434988    rs4318651    A    G    52.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
4    7435379    rs4689746    A    G    761.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_AMINO_ACID_CHANGE=L410;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_7432022_7436700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319098    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:794,63,0
4    7436486    rs11548325    C    A    196.10    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-1.179;QD=21.79;ReadPosRankSum=0.067;SNPEFF_AMINO_ACID_CHANGE=A41S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_7432022_7436700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319098    GT:AD:DP:GQ:PL    0/1:2,7:9:59.38:226,0,59
4    7639795    rs2285790    C    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    7639906    rs2158276    A    C    564.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:597,45,0
4    7655855    rs2285789    C    T    713.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=29.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,24:24:57.18:746,57,0
4    7665945    rs6810814    G    A    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511199    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
4    7668618    rs1541383    A    G    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
4    7684641    rs4689820    C    A    810.39    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.883;QD=11.58;ReadPosRankSum=1.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    0/1:37,33:70:99:840,0,992
4    7691193    rs929264    G    C    1251.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.088;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.57;MQ0=0;MQRankSum=-1.491;QD=29.1;ReadPosRankSum=-0.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:1,42:43:64.51:1284,65,0
4    7691419    rs2285785    A    G    118.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.79;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    0/1:2,4:6:59.83:149,0,60
4    7705796    rs28706846    G    A    191.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=24.0;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    0/1:2,6:8:41.39:222,0,41
4    7714212    rs4689832    G    A    84.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    7714490    rs4689833    T    C    2651.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.6063;MQ=59.38;MQ0=0;QD=35.36;SNPEFF_AMINO_ACID_CHANGE=D461;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_7714460_7714580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2685,199,0
4    7714640    rs2285783    C    G    265.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;MQRankSum=-0.551;QD=17.71;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    0/1:5,10:15:99:296,0,151
4    7716910    rs28531835    C    T    1216.67    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=132;Dels=0.0;FS=0.673;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.036;QD=9.22;ReadPosRankSum=-1.558;SNPEFF_AMINO_ACID_CHANGE=C536;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_7716910_7717038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    0/1:82,50:132:99:1247,0,2270
4    7716932    rs6816604    T    C    3993.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=S544P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_7716910_7717038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3994,310,0
4    7717213    rs4689834    T    G    81.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
4    7720016    rs16840907    T    A    30.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.34;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    0/1:5,2:7:60.38:60,0,135
4    7728759    rs2301744    G    A    82.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
4    7731310    rs1544402    G    A    441.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:475,36,0
4    7731560    rs1076226    T    A    217.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:250,21,0
4    7738730    rs6840685    A    C    209.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
4    7741851    rs12501485    A    G    228.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=20.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329016    GT:AD:DP:GQ:PL    1/1:0,11:11:24.04:261,24,0
4    7770723    rs2285761    G    T    863.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.171;DB;DP=57;Dels=0.0;FS=12.059;HRun=0;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;MQRankSum=-1.714;QD=15.16;ReadPosRankSum=-1.449;SNPEFF_AMINO_ACID_CHANGE=R672;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_7770571_7770735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358461    GT:AD:DP:GQ:PL    0/1:24,32:57:99:894,0,681
4    7780712    rs2269877    C    G    679.93    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-0.467;QD=17.43;ReadPosRankSum=-0.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358461    GT:AD:DP:GQ:PL    0/1:17,22:39:99:710,0,552
4    7783163    rs28542374    G    A    915.33    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=3.844;DB;DP=66;Dels=0.0;FS=5.111;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.324;QD=13.87;ReadPosRankSum=1.173;SNPEFF_AMINO_ACID_CHANGE=S574;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_7783103_7783354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382543    GT:AD:DP:GQ:PL    0/1:37,29:66:99:945,0,1024
4    7820727    rs4447865    T    A    56.69    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=4.393;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.678;QD=5.15;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358461    GT:AD:DP:GQ:PL    0/1:7,4:11:86.68:87,0,259
4    7845067    rs62289296    G    A    407.65    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.35;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.887;QD=19.41;ReadPosRankSum=1.813;SNPEFF_AMINO_ACID_CHANGE=S115;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_7844866_7845077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358461    GT:AD:DP:GQ:PL    0/1:8,13:21:99:438,0,267
4    7845123    rs62289297    G    C    148.66    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=21.24;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358461    GT:AD:DP:GQ:PL    0/1:2,5:7:64.17:179,0,64
4    7984918    rs17179948    C    T    449.11    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.69;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.183;QD=22.46;ReadPosRankSum=-1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    0/1:5,15:20:99:479,0,144
4    7985392    rs4696933    C    G    266.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:300,24,0
4    7995559    rs13130459    G    A    60.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.05;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    0/1:3,3:6:90.31:90,0,91
4    8000486    rs13108278    T    C    35.41    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=3.22;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    0/1:7,4:11:65.40:65,0,228
4    8006988    rs77249161    T    C    378.88    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=27;Dels=0.0;FS=7.952;HRun=0;HaplotypeScore=0.8321;MQ=57.39;MQ0=0;MQRankSum=-0.027;QD=14.03;ReadPosRankSum=0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428004    GT:AD:DP:GQ:PL    0/1:12,15:27:99:409,0,345
4    8009759    rs17180256    G    A    3827.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.81;DB;DP=120;Dels=0.0;FS=2.752;HRun=0;HaplotypeScore=1.5767;MQ=59.65;MQ0=0;MQRankSum=-0.871;QD=31.89;ReadPosRankSum=1.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510277    GT:AD:DP:GQ:PL    1/1:2,118:120:99:3827,214,0
4    8010112    rs13125250    C    T    252.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
4    8021592    rs13131680    A    C    194.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515079    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:228,18,0
4    8031471    rs80092385    A    G    252.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.36;MQ0=0;QD=22.98;SNPEFF_AMINO_ACID_CHANGE=C128;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8031383_8031503;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318888    GT:AD:DP:GQ:PL    1/1:0,10:11:21.07:286,21,0
4    8031590    rs11942146    T    G    163.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
4    8046865    rs59097324    G    A    1035.80    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=3.459;DB;DP=56;Dels=0.0;FS=4.773;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.096;QD=18.5;ReadPosRankSum=0.772;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    0/1:18,38:56:99:1066,0,455
4    8047099    rs74285611    C    T    71.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.89;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,146
4    8056197    rs1320060    G    A    44.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.24;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:75,0,33
4    8056205    rs1320059    C    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    8062638    rs6853485    A    C    499.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:533,39,0
4    8062689    rs6811028    T    C    707.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=24.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,29:29:72.09:741,72,0
4    8062690    rs10938683    G    A    715.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=24.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,29:29:72.09:749,72,0
4    8062871    rs6853901    A    C    319.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:352,30,0
4    8082647    rs2249919    C    G    745.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296372    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:779,60,0
4    8108027    rs12108540    T    C    54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502800    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
4    8207154    rs1298878    C    T    236.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.965;QD=16.92;ReadPosRankSum=1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504822    GT:AD:DP:GQ:PL    0/1:6,8:14:99:267,0,198
4    8211624    rs1712316    C    T    150.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382521    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:183,15,0
4    8214636    rs1712287    T    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457650    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    8216099    rs2291069    G    A    164.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=16.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457650    GT:AD:DP:GQ:PL    0/1:4,6:10:95.92:195,0,96
4    8216391    rs1618403    C    T    70.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.83;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457650    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,182
4    8216440    rs35002332    T    C    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.65;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457650    GT:AD:DP:GQ:PL    0/1:2,2:4:67.59:69,0,68
4    8217829    rs1712290    C    A    379.42    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=23;Dels=0.0;FS=3.796;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=16.5;ReadPosRankSum=-0.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457650    GT:AD:DP:GQ:PL    0/1:10,13:23:99:409,0,305
4    8219745    rs1123159    C    T    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
4    8221058    rs4696782    G    A    491.98    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.43;DB;DP=39;Dels=0.0;FS=7.194;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=12.61;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503284    GT:AD:DP:GQ:PL    0/1:20,19:39:99:522,0,579
4    8227044    rs2279196    G    A    117.18    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.44;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508641    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:147,0,27
4    8228627    rs1678299    G    C    141.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=20.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508641    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:175,15,0
4    8228632    rs1678300    A    C    191.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508641    GT:AD:DP:GQ:PL    1/1:0,7:7:21.03:224,21,0
4    8228731    rs1281145    T    C    875.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=L175P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8228707_8230371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:909,69,0
4    8228894    rs1292647    T    C    374.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=24.97;SNPEFF_AMINO_ACID_CHANGE=D229;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8228707_8230371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,15:15:36.08:408,36,0
4    8229218    rs1281146    A    G    2619.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_AMINO_ACID_CHANGE=L337;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8228707_8230371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2652,193,0
4    8229326    rs1281147    T    C    949.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.76;SNPEFF_AMINO_ACID_CHANGE=P373;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8228707_8230371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,33:33:84.24:982,84,0
4    8229713    rs1281148    A    G    644.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=Q502;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8228707_8230371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:678,51,0
4    8229774    rs1281149    C    T    531.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=R523C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8228707_8230371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:564,42,0
4    8230070    rs1281150    T    C    540.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_AMINO_ACID_CHANGE=A621;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8228707_8230371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,18:18:48.12:574,48,0
4    8230235    rs1281151    T    C    272.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_AMINO_ACID_CHANGE=L676;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8228707_8230371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:306,24,0
4    8237096    rs1678260    G    C    422.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382516    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:455,33,0
4    8242466    rs1281103    A    G    1410.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=A1189;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8242425_8242818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SH3TC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539824    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1444,108,0
4    8288521    rs7692567    G    A    780.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:813,60,0
4    8288581    rs7678398    A    C    118.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:151,12,0
4    8288612    rs7678420    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    8293356    rs4696793    G    A    256.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
4    8293379    rs4235256    C    A    81.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
4    8293398    rs4235257    C    T    70.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
4    8293974    rs4235258    C    T    419.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:453,36,0
4    8304038    rs4696797    T    C    237.34    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.747;QD=29.67;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    0/1:1,7:8:2.60:266,0,3
4    8304137    rs13144236    G    A    1167.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307358    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1200,90,0
4    8368604    rs708244    C    T    426.11    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.824;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.417;QD=22.43;ReadPosRankSum=-0.787;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503233    GT:AD:DP:GQ:PL    0/1:5,14:19:99:456,0,147
4    8368944    rs12646666    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356406    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:73,0,25
4    8375342    rs2280571    G    A    68.06    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.56;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=S614;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8375288_8375355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACOX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356406    GT:AD:DP:GQ:PL    0/1:5,4:9:98.05:98,0,188
4    8383167    rs2293230    A    G    712    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.552;DB;DP=79;Dels=0.0;FS=11.192;HRun=3;HaplotypeScore=0.0;MQ=58.82;MQ0=0;MQRankSum=0.517;QD=9.01;ReadPosRankSum=-0.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508302    GT:AD:DP:GQ:PL    0/1:48,31:79:99:742,0,1537
4    8390859    rs13136987    G    A    343.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.582;QD=17.15;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356406    GT:AD:DP:GQ:PL    0/1:8,12:20:99:373,0,235
4    8391049    rs2242483    A    G    138.21    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=12.56;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356406    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,218
4    8401124    rs3796740    C    T    86.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356406    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
4    8415982    rs2245515    C    T    467.27    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.331;DB;DP=38;Dels=0.03;FS=9.625;HRun=1;HaplotypeScore=1.7005;MQ=58.81;MQ0=0;MQRankSum=-1.082;QD=11.98;ReadPosRankSum=-1.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356406    GT:AD:DP:GQ:PL    0/1:20,18:38:99:497,0,664
4    8443041    rs3806811    C    T    633.69    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.569;DB;DP=51;Dels=0.0;FS=10.643;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.039;QD=12.43;ReadPosRankSum=1.499;SNPEFF_AMINO_ACID_CHANGE=L164;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8442550_8443168;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=METTL19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389737    GT:AD:DP:GQ:PL    0/1:28,23:51:99:664,0,895
4    8454639    rs1880024    A    G    2276.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.957;DB;DP=76;Dels=0.0;FS=2.822;HRun=2;HaplotypeScore=1.9998;MQ=59.7;MQ0=0;MQRankSum=-1.135;QD=29.95;ReadPosRankSum=0.115;SNPEFF_AMINO_ACID_CHANGE=R111G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8454609_8454716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=METTL19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000513449    GT:AD:DP:GQ:PL    1/1:2,74:76:99:2310,115,0
4    8454938    rs871768    G    A    71.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=METTL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528167    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:104,9,0
4    8456701    rs2002860    C    G    115.95    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=19.32;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=METTL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285635    GT:AD:DP:GQ:PL    0/1:1,5:6:27.60:146,0,28
4    8473050    rs2631768    G    A    385.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=METTL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513449    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:418,33,0
4    8479687    rs3796763    C    T    251.97    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.772;DB;DP=15;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.772;QD=16.8;ReadPosRankSum=0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=METTL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285635    GT:AD:DP:GQ:PL    0/1:7,8:15:99:282,0,198
4    8479754    rs2631738    A    G    239.56    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=10.89;ReadPosRankSum=1.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=METTL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285635    GT:AD:DP:GQ:PL    0/1:12,10:22:99:270,0,401
4    8511223    rs3103067    A    G    182.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-689P11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528132    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:215,18,0
4    8512250    rs3103098    G    C    65.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.22;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-689P11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528132    GT:AD:DP:GQ:PL    0/1:6,3:9:95.01:95,0,212
4    8582856    rs17844777    T    G    170.13    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.424;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=13.09;ReadPosRankSum=1.493;SNPEFF_AMINO_ACID_CHANGE=S49;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8582293_8583377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR78;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382487    GT:AD:DP:GQ:PL    0/1:6,7:13:99:200,0,177
4    8583312    rs17844778    A    C    31.35    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.067;QD=3.92;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=R201S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8582293_8583377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR78;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382487    GT:AD:DP:GQ:PL    0/1:6,2:8:61.34:61,0,176
4    8584168    rs143438158    C    G    62.45    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.61;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503448    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:92,0,29
4    8584448    rs6824455    T    C    53.35    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.254;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.085;QD=4.1;ReadPosRankSum=0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503448    GT:AD:DP:GQ:PL    0/1:10,3:13:83.34:83,0,365
4    8588629    rs3115388    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    8588685    rs3115387    C    T    269.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382487    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:302,24,0
4    8602793    rs4299567    T    C    487.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514875    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:521,39,0
4    8602798    rs2241069    G    C    188.19    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.562;DB;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=12.55;ReadPosRankSum=-0.521;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_8602684_8603224;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382480    GT:AD:DP:GQ:PL    0/1:8,7:15:99:218,0,211
4    8602816    rs4594711    A    G    565.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_8602684_8603224;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382480    GT:AD:DP:GQ:PL    1/1:0,19:19:51.12:599,51,0
4    8602884    rs4301095    T    C    1011.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_AMINO_ACID_CHANGE=S41;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8602850_8603224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    1/1:0,34:34:81.23:1045,81,0
4    8602935    rs4431213    A    G    1474.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_AMINO_ACID_CHANGE=S58;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8602850_8603224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1508,120,0
4    8603117    rs35993494    A    T    384.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_AMINO_ACID_CHANGE=Q119L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8602850_8603224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:418,33,0
4    8607587    rs4696703    G    A    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.34;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504070    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,108
4    8608934    rs2302579    C    T    116.57    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=6.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    0/1:11,6:17:99:147,0,396
4    8608979    rs2302578    G    A    308.18    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.76;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.403;QD=13.4;ReadPosRankSum=-0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    0/1:13,10:23:99:338,0,356
4    8616054    rs2302572    C    T    98.06    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.779;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;MQRankSum=-0.496;QD=3.38;ReadPosRankSum=-2.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    0/1:22,7:29:99:128,0,707
4    8616070    rs2302571    T    C    135.71    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=34;Dels=0.0;FS=11.137;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.852;QD=3.99;ReadPosRankSum=-1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    0/1:27,7:34:99:166,0,820
4    8616096    rs1131140    T    C    137.86    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=35;Dels=0.0;FS=7.1;HRun=0;HaplotypeScore=1.7336;MQ=60.0;MQ0=0;MQRankSum=-0.995;QD=3.94;ReadPosRankSum=0.183;SNPEFF_AMINO_ACID_CHANGE=D321;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8616086_8616225;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382480    GT:AD:DP:GQ:PL    0/1:26,9:35:99:168,0,780
4    8616179    rs7378066    T    C    732.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_AMINO_ACID_CHANGE=I349T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8616086_8616225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382480    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:766,60,0
4    8620045    rs4444816    A    G    396.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=26.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:430,33,0
4    8620325    rs4696872    A    G    86.24    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=7.84;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315782    GT:AD:DP:GQ:PL    0/1:7,4:11:99:116,0,239
4    8621194    rs28514374    A    G    1032.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=P211;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_8620989_8621486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429646    GT:AD:DP:GQ:PL    1/1:0,32:32:81.23:1066,81,0
4    8621386    rs1050464    A    G    34.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.95;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513486    GT:AD:DP:GQ:PL    0/1:3,2:5:64.74:65,0,72
4    8951506    .    C    G    667.99    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.156;DP=105;Dels=0.0;FS=12.8;HRun=0;HaplotypeScore=0.0;MQ=42.94;MQ0=12;MQRankSum=-7.71;QD=6.36;ReadPosRankSum=0.564;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-747H12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360245    GT:AD:DP:GQ:PL    0/1:57,48:105:99:698,0,1882
4    8951816    rs3952877    A    G    4317.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=48.38;MQ0=3;QD=32.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-747H12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360245    GT:AD:DP:GQ:PL    1/1:0,130:131:99:4317,328,0
4    8952148    rs35883961    G    C    701.44    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.45;DB;DP=67;Dels=0.0;FS=3.373;HRun=0;HaplotypeScore=0.9998;MQ=53.92;MQ0=1;MQRankSum=-0.348;QD=10.47;ReadPosRankSum=0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-747H12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360245    GT:AD:DP:GQ:PL    0/1:33,34:67:99:731,0,1191
4    8983046    rs35313517    G    A    49.42    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=0.938;DB;DP=16;Dels=0.0;FS=5.88;HRun=0;HaplotypeScore=0.0;MQ=56.8;MQ0=0;MQRankSum=0.794;QD=3.09;ReadPosRankSum=-1.371;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-747H12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504939    GT:AD:DP:GQ:PL    0/1:13,3:16:79.42:79,0,340
4    8983116    rs35501370    A    G    443.80    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.79;MQ0=0;MQRankSum=1.127;QD=14.32;ReadPosRankSum=0.573;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-747H12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504939    GT:AD:DP:GQ:PL    0/1:15,16:31:99:474,0,536
4    9024978    rs137911680    C    T    3645.92    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DB;DP=250;DS;Dels=0.0;FS=6.772;HRun=0;HaplotypeScore=2.362;MQ=54.81;MQ0=0;MQRankSum=0.527;QD=14.58;ReadPosRankSum=-0.861;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC073648.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408553    GT:AD:DP:GQ:PL    0/1:135,115:250:99:3646,0,4371
4    9025440    rs139712619    G    C    472.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5765;MQ=38.01;MQ0=1;QD=24.88;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC073648.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408553    GT:AD:DP:GQ:PL    1/1:0,18:19:45.11:506,45,0
4    9157388    rs150547742    A    T    947.43    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.974;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=53.5;MQ0=0;MQRankSum=1.414;QD=16.62;ReadPosRankSum=0.871;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1286E23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509817    GT:AD:DP:GQ:PL    0/1:27,30:57:99:977,0,931
4    9157398    rs139859507    G    C    786.09    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.56;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=53.81;MQ0=0;MQRankSum=-0.161;QD=16.73;ReadPosRankSum=-0.226;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1286E23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509817    GT:AD:DP:GQ:PL    0/1:20,27:47:99:816,0,634
4    9157527    rs149961376    T    C    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.83;MQ0=0;MQRankSum=0.0;QD=9.3;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1286E23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509817    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:67,0,69
4    9162266    rs141659431    T    C    1684.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=30.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1286E23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509817    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1717,129,0
4    9216983    .    G    A    203.64    MQFilter40    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=1.953;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=11.83;MQ0=38;MQRankSum=-0.934;QD=3.84;ReadPosRankSum=-1.613;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1286E23.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417945    GT:AD:DP:GQ:PL    0/1:38,15:53:15.33:234,0,15
4    9217078    rs190541116    G    T    388.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=13.48;MQ0=19;QD=9.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1286E23.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417945    GT:AD:DP:GQ:PL    1/1:0,40:40:53.80:422,54,0
4    9232201    .    G    T    374.42    MQFilter40;QDFilter2    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DP=250;DS;Dels=0.0;FS=3.432;HRun=2;HaplotypeScore=0.8941;MQ=11.88;MQ0=47;MQRankSum=-0.67;QD=1.5;ReadPosRankSum=-1.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1286E23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421288    GT:AD:DP:GQ:PL    0/1:131,119:250:99:404,0,411
4    9232341    rs191246092    T    C    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.86;MQ0=32;MQRankSum=0.736;QD=0.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1286E23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421288    GT:AD:DP:GQ:PL    1/1:3,33:36:6.02:67,6,0
4    9232435    rs183104485    G    T    329.17    MQFilter40    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=4.353;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.982;MQ=13.14;MQ0=23;MQRankSum=-0.995;QD=3.39;ReadPosRankSum=4.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1286E23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421288    GT:AD:DP:GQ:PL    0/1:58,39:97:15.18:359,0,15
4    9237789    rs138580837    A    G    34.45    QDFilter2    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.42;MQ0=0;MQRankSum=-1.777;QD=1.81;ReadPosRankSum=1.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1286E23.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456464    GT:AD:DP:GQ:PL    0/1:15,4:19:64.45:64,0,496
4    9237811    rs149253543    C    A    63.99    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.365;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.09;MQ0=0;MQRankSum=-1.516;QD=4.0;ReadPosRankSum=-0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1286E23.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456464    GT:AD:DP:GQ:PL    0/1:12,4:16:93.98:94,0,395
4    9240951    .    C    G    1162.74    MQFilter40    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DP=250;DS;Dels=0.0;FS=44.476;HRun=0;HaplotypeScore=0.734;MQ=16.95;MQ0=48;MQRankSum=9.122;QD=4.65;ReadPosRankSum=-6.127;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1286E23.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456464    GT:AD:DP:GQ:PL    0/1:183,67:250:99:1193,0,140
4    9360835    .    C    A    84.32    MQFilter40;QDFilter2    AB=0.967;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DP=244;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.61;MQ0=227;MQRankSum=0.553;QD=0.35;ReadPosRankSum=-0.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511681    GT:AD:DP:GQ:PL    0/1:232,8:244:99:114,0,267
4    9360905    .    C    A    77.86    MQFilter40;QDFilter2    AB=0.96;AC=1;AF=0.50;AN=2;BaseQRankSum=0.866;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=12.13;MQ0=204;MQRankSum=0.173;QD=0.31;ReadPosRankSum=-0.706;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511681    GT:AD:DP:GQ:PL    0/1:240,10:250:99:108,0,1021
4    9370690    rs10032245    G    C    363.79    MQFilter40;QDFilter2    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=250;DS;Dels=0.0;FS=1.624;HRun=0;HaplotypeScore=3.9015;MQ=12.17;MQ0=214;MQRankSum=0.444;QD=1.46;ReadPosRankSum=-0.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504104    GT:AD:DP:GQ:PL    0/1:132,118:250:99:394,0,474
4    9370897    rs6857841    C    T    331.72    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.877;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.36;MQ0=0;MQRankSum=0.215;QD=14.42;ReadPosRankSum=1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504104    GT:AD:DP:GQ:PL    0/1:12,11:23:99:362,0,392
4    9370948    rs6858036    C    G    97.77    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.59;MQ0=0;MQRankSum=0.0;QD=10.86;ReadPosRankSum=-2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504104    GT:AD:DP:GQ:PL    0/1:4,5:9:99:128,0,126
4    9370962    rs6853122    G    C    32.52    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=-0.72;QD=5.42;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504104    GT:AD:DP:GQ:PL    0/1:4,2:6:62.52:63,0,126
4    9384846    rs12509371    C    G    429.43    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.391;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.23;MQ0=0;MQRankSum=-0.957;QD=11.61;ReadPosRankSum=-0.957;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:18,19:37:99:459,0,603
4    9385194    .    A    AG    228.21    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=3.841;DP=24;FS=0.0;HRun=0;HaplotypeScore=122.4187;IndelType=I;MQ=48.3;MQ0=0;MQRankSum=-3.905;QD=9.13;ReadPosRankSum=3.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:16,9:24:99:267,0,558
4    9385536    rs140325188    A    G    667.26    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=37;Dels=0.0;FS=3.231;HRun=0;HaplotypeScore=0.9999;MQ=55.27;MQ0=0;MQRankSum=-0.506;QD=18.03;ReadPosRankSum=-0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:16,21:37:99:697,0,507
4    9385659    rs12649280    C    T    1288.99    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.281;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=56.79;MQ0=0;MQRankSum=-1.594;QD=14.65;ReadPosRankSum=0.192;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:45,43:88:99:1319,0,1520
4    9385916    rs9993915    A    G    2844.24    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.012;DB;DP=239;Dels=0.0;FS=3.675;HRun=0;HaplotypeScore=3.111;MQ=54.15;MQ0=1;MQRankSum=-5.24;QD=11.85;ReadPosRankSum=-0.322;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:125,114:239:99:2874,0,3972
4    9387155    rs6449145    C    T    1374.19    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.887;DB;DP=87;Dels=0.0;FS=0.836;HRun=0;HaplotypeScore=1.5783;MQ=58.16;MQ0=0;MQRankSum=-0.731;QD=15.8;ReadPosRankSum=2.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:38,48:87:99:1404,0,1196
4    9387204    rs6449148    A    G    1250.98    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.578;DB;DP=90;Dels=0.0;FS=4.183;HRun=0;HaplotypeScore=1.7621;MQ=55.82;MQ0=0;MQRankSum=-1.808;QD=13.9;ReadPosRankSum=-1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:39,50:90:99:1281,0,1177
4    9387254    rs147753216    A    AT    732.09    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=1.706;DB;DP=81;FS=4.801;HRun=11;HaplotypeScore=348.577;IndelType=I;MQ=55.54;MQ0=0;MQRankSum=-0.699;QD=8.72;ReadPosRankSum=1.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:48,33:81:99:771,0,592
4    9388034    rs143989404    T    C    50.04    MQFilter40;QDFilter2    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.453;DB;DP=197;Dels=0.0;FS=11.119;HRun=2;HaplotypeScore=3.6166;MQ=21.06;MQ0=56;MQRankSum=-2.978;QD=0.25;ReadPosRankSum=-0.009;SNPEFF_AMINO_ACID_CHANGE=E68;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_9388003_9388098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:160,37:197:80.03:80,0,2091
4    9388888    rs148581434    A    G    822.85    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=2.656;DB;DP=242;DS;Dels=0.0;FS=3.211;HRun=1;HaplotypeScore=1.9243;MQ=44.67;MQ0=13;MQRankSum=-11.695;QD=3.4;ReadPosRankSum=-1.083;SNPEFF_AMINO_ACID_CHANGE=H42;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_9388875_9389001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:157,85:242:99:853,0,4940
4    9390521    rs6846545    A    G    167.66    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.9;MQ0=0;MQRankSum=-1.58;QD=16.77;ReadPosRankSum=-1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:3,7:10:98.15:198,0,98
4    9390660    rs6851747    A    G    1668.84    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=159;Dels=0.0;FS=5.594;HRun=2;HaplotypeScore=0.5784;MQ=50.48;MQ0=0;MQRankSum=-7.8;QD=10.5;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:84,75:159:99:1699,0,2475
4    9390760    rs4318648    C    A    1501.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.344;DB;DP=134;Dels=0.0;FS=1.535;HRun=1;HaplotypeScore=3.288;MQ=48.79;MQ0=0;MQRankSum=-2.607;QD=11.21;ReadPosRankSum=1.513;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1396O13.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508324    GT:AD:DP:GQ:PL    0/1:73,61:134:99:1532,0,2178
4    9400930    rs6449271    A    G    601.28    MQFilter40    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.574;DB;DP=99;Dels=0.0;FS=18.579;HRun=0;HaplotypeScore=0.0;MQ=22.96;MQ0=45;MQRankSum=0.787;QD=6.07;ReadPosRankSum=2.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344638    GT:AD:DP:GQ:PL    0/1:70,29:99:99:631,0,862
4    9404983    rs138641693    TCACA    T    415.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=145.6181;IndelType=D;MQ=56.64;MQ0=0;QD=20.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344638    GT:AD:DP:GQ:PL    1/1:14,6:20:40.93:457,41,0
4    9404999    .    AC    A    104.10    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.619;DP=19;FS=0.0;HRun=1;HaplotypeScore=138.3605;IndelType=D;MQ=56.45;MQ0=0;MQRankSum=-1.445;QD=5.48;ReadPosRankSum=1.115;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344638    GT:AD:DP:GQ:PL    0/1:13,6:19:99:143,0,111
4    9405001    .    AC    A    128.46    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DP=21;FS=0.0;HRun=1;HaplotypeScore=143.0588;IndelType=D;MQ=56.8;MQ0=0;MQRankSum=-1.05;QD=6.12;ReadPosRankSum=0.978;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344638    GT:AD:DP:GQ:PL    0/1:15,6:21:99:167,0,145
4    9446325    rs67703456    AG    A    1103.04    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=5.162;DB;DP=63;FS=0.0;HRun=1;HaplotypeScore=155.5645;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=1.492;QD=17.51;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334879    GT:AD:DP:GQ:PL    0/1:31,32:63:99:1142,0,1272
4    9495236    rs6811895    A    G    80.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=43.73;MQ0=0;QD=26.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509439    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
4    9495320    rs11725001    G    A    36.17    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.58;MQ0=0;MQRankSum=-0.198;QD=5.17;ReadPosRankSum=-0.198;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509439    GT:AD:DP:GQ:PL    0/1:2,5:7:66.16:66,0,70
4    9495402    rs11725044    G    A    110.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.8941;MQ=53.65;MQ0=0;MQRankSum=0.103;QD=11.07;ReadPosRankSum=1.268;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509439    GT:AD:DP:GQ:PL    0/1:5,5:10:99:141,0,126
4    9512484    rs7658778    G    C    43.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.44;MQ0=0;QD=14.47;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511021    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
4    9514457    rs35732176    G    A    213.08    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=19;Dels=0.0;FS=2.162;HRun=1;HaplotypeScore=0.0;MQ=56.74;MQ0=0;MQRankSum=0.612;QD=11.21;ReadPosRankSum=-1.266;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511021    GT:AD:DP:GQ:PL    0/1:9,10:19:99:243,0,272
4    9514668    rs13108672    C    T    2777.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8947;MQ=57.9;MQ0=0;QD=32.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511021    GT:AD:DP:GQ:PL    1/1:0,84:85:99:2811,223,0
4    9514776    rs34056993    C    T    1467.57    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.392;DB;DP=118;Dels=0.0;FS=1.604;HRun=1;HaplotypeScore=0.0;MQ=42.51;MQ0=6;MQRankSum=-1.242;QD=12.44;ReadPosRankSum=-0.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511021    GT:AD:DP:GQ:PL    0/1:60,58:118:99:1498,0,1528
4    9514819    rs13108939    C    A    4518.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=44.35;MQ0=6;QD=30.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511021    GT:AD:DP:GQ:PL    1/1:0,149:149:99:4519,355,0
4    9515121    rs13109658    C    T    3994.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.85;MQ0=0;QD=34.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511021    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3995,307,0
4    9515174    rs12499381    C    T    3055.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.8519;MQ=55.7;MQ0=0;QD=32.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511021    GT:AD:DP:GQ:PL    1/1:1,92:93:99:3089,238,0
4    9515288    rs7689839    G    T    2689.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.99;MQ0=0;QD=31.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1396O13.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511021    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2723,214,0
4    9557642    rs10006755    A    G    3343.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=52.77;MQ0=0;QD=29.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR548I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408348    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3344,301,0
4    9557815    rs111482845    TAGAAGG    T    4865.22    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=11.509;DB;DP=218;DS;FS=0.537;HRun=0;HaplotypeScore=1302.7465;IndelType=D;MQ=49.84;MQ0=2;MQRankSum=-9.601;QD=21.43;ReadPosRankSum=-0.924;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR548I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408348    GT:AD:DP:GQ:PL    0/1:140,87:218:99:4865,0,13104
4    9558041    rs11728441    T    C    3140.64    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=6.826;DB;DP=200;DS;Dels=0.0;FS=7.116;HRun=0;HaplotypeScore=5.442;MQ=59.05;MQ0=0;MQRankSum=0.232;QD=15.7;ReadPosRankSum=1.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR548I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408348    GT:AD:DP:GQ:PL    0/1:95,105:200:99:3171,0,2935
4    9694490    rs12649073    A    G    231.20    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=14;Dels=0.0;FS=11.553;HRun=0;HaplotypeScore=0.0;MQ=47.65;MQ0=1;MQRankSum=-2.083;QD=16.51;ReadPosRankSum=1.003;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    0/1:5,9:14:99:261,0,122
4    9694522    rs13136903    T    C    353.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.81;MQ0=0;QD=32.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:387,30,0
4    9694548    rs10939463    T    C    457.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.87;MQ0=0;QD=32.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:491,36,0
4    9694662    rs13103452    T    C    287.58    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.795;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.435;QD=8.46;ReadPosRankSum=0.964;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    0/1:24,10:34:99:318,0,846
4    9696677    rs9291604    T    C    4552.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9859;MQ=39.8;MQ0=11;QD=27.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    1/1:1,165:167:99:4552,376,0
4    9696699    rs28390358    C    G    1408.85    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=180;Dels=0.0;FS=6.159;HRun=1;HaplotypeScore=5.8854;MQ=44.06;MQ0=7;MQRankSum=-6.374;QD=7.83;ReadPosRankSum=0.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    0/1:99,81:180:99:1439,0,2784
4    9696996    rs9761757    T    C    31.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.58;MQ0=0;QD=7.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    1/1:0,4:4:6.01:62,6,0
4    9698240    rs13141264    G    A    1029.77    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=86;Dels=0.0;FS=4.656;HRun=2;HaplotypeScore=0.7887;MQ=54.63;MQ0=0;MQRankSum=-5.021;QD=11.97;ReadPosRankSum=1.622;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    0/1:50,36:86:99:1060,0,1532
4    9700032    rs6847312    T    G    2938.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=50.39;MQ0=1;QD=34.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2971,229,0
4    9700056    rs6448969    G    A    857.95    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.508;DB;DP=81;Dels=0.0;FS=1.925;HRun=0;HaplotypeScore=0.0;MQ=49.55;MQ0=1;MQRankSum=-2.844;QD=10.59;ReadPosRankSum=1.476;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    0/1:47,34:81:99:888,0,1424
4    9700062    rs7434710    G    A    862.61    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.283;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.07;MQ0=1;MQRankSum=-2.612;QD=10.78;ReadPosRankSum=1.902;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    0/1:47,33:80:99:893,0,1573
4    9700392    rs28728462    G    A    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.62;MQ0=0;MQRankSum=0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503331    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:65,0,31
4    9700774    rs3890174    C    G    87.98    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503331    GT:AD:DP:GQ:PL    0/1:1,5:6:27.20:118,0,27
4    9700876    rs188163297    C    G    748.15    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.958;DB;DP=40;Dels=0.0;FS=2.482;HRun=0;HaplotypeScore=2.9197;MQ=53.72;MQ0=0;MQRankSum=-0.684;QD=18.7;ReadPosRankSum=-1.997;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503331    GT:AD:DP:GQ:PL    0/1:17,23:40:99:778,0,578
4    9700910    rs4594723    A    T    2345.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=49.87;MQ0=0;QD=32.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503331    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2378,193,0
4    9701092    rs4583758    C    G    3715.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=36.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503331    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3715,271,0
4    9706342    rs9685887    T    G    145.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
4    9706478    rs11943931    C    A    199.89    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.933;QD=10.52;ReadPosRankSum=0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    0/1:10,9:19:99:230,0,311
4    9707682    rs13101652    A    G    909.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.15;MQ0=0;QD=32.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:942,72,0
4    9707740    rs13122952    G    A    118.10    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.95;MQ0=0;MQRankSum=0.637;QD=7.87;ReadPosRankSum=-0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    0/1:8,7:15:99:148,0,295
4    9707827    rs13101880    A    G    238.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.62;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-180A12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340703    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:271,21,0
4    9744131    rs6448982    C    T    187.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.34;MQ0=0;QD=31.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-751L19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513014    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:221,18,0
4    9756491    rs3900665    A    T    433.52    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=27;Dels=0.0;FS=3.16;HRun=0;HaplotypeScore=3.3673;MQ=57.53;MQ0=0;MQRankSum=1.82;QD=16.06;ReadPosRankSum=1.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-751L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514144    GT:AD:DP:GQ:PL    0/1:13,14:27:99:464,0,414
4    9756710    rs6834270    A    G    4104.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.81;MQ0=0;QD=31.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-751L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514144    GT:AD:DP:GQ:PL    1/1:0,128:129:99:4105,319,0
4    9756836    rs6834512    A    C    3693.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.65;MQ0=4;QD=28.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-751L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514144    GT:AD:DP:GQ:PL    1/1:0,128:128:99:3693,295,0
4    9756914    rs6834697    A    G    2016.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.41;MQ0=1;QD=28.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-751L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514144    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2050,171,0
4    9756943    rs34497276    CT    C    522.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=13;HaplotypeScore=276.4329;IndelType=D;MQ=44.1;MQ0=3;QD=12.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-751L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514144    GT:AD:DP:GQ:PL    1/1:12,28:39:80.60:564,81,0
4    9784631    rs6283    C    T    3014.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DB;DP=94;Dels=0.0;FS=4.586;HRun=0;HaplotypeScore=2.723;MQ=58.84;MQ0=0;MQRankSum=1.243;QD=32.07;ReadPosRankSum=-1.243;SNPEFF_AMINO_ACID_CHANGE=P326;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_9783258_9785632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304374    GT:AD:DP:GQ:PL    1/1:1,93:94:99:3048,207,0
4    9785134    rs1967551    T    C    131.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.8;MQ0=0;MQRankSum=-0.059;QD=8.76;ReadPosRankSum=-1.473;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503803    GT:AD:DP:GQ:PL    0/1:6,9:15:99:161,0,218
4    9892102    rs10939602    T    C    142.30    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=20.33;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264784    GT:AD:DP:GQ:PL    0/1:2,5:7:54.38:172,0,54
4    9909850    rs2280204    T    G    737.73    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=3.818;DB;DP=72;Dels=0.0;FS=0.972;HRun=1;HaplotypeScore=0.8941;MQ=58.71;MQ0=0;MQRankSum=0.117;QD=10.25;ReadPosRankSum=-0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264784    GT:AD:DP:GQ:PL    0/1:43,28:72:99:768,0,1305
4    9921931    rs6823877    T    C    296.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264784    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
4    9943700    rs4292327    G    A    510.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264784    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:544,39,0
4    9981997    rs13145758    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513129    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    9982044    rs13125209    A    C    201.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513129    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:234,18,0
4    9982330    rs13125646    A    G    1082.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DB;DP=34;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=2.554;MQ=59.32;MQ0=0;MQRankSum=-1.733;QD=31.84;ReadPosRankSum=-1.529;SNPEFF_AMINO_ACID_CHANGE=L160;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_9982216_9982361;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309065    GT:AD:DP:GQ:PL    1/1:1,33:34:46.06:1116,46,0
4    9998440    rs10939650    C    T    1393.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=36.66;SNPEFF_AMINO_ACID_CHANGE=T125;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_9998405_9998565;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264784    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1426,105,0
4    9998493    rs13113918    A    G    1165.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3046;MQ=59.34;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=L108;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_9998405_9998565;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264784    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1198,90,0
4    9998605    rs28592748    T    C    998.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264784    GT:AD:DP:GQ:PL    1/1:0,31:31:81.20:1032,81,0
4    10027354    rs6819833    C    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309065    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    10027509    rs67909350    GA    G    869.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=10;HaplotypeScore=224.2991;IndelType=D;MQ=59.66;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309065    GT:AD:DP:GQ:PL    1/1:5,35:40:99:911,105,0
4    10027542    rs6820230    C    T    1421.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=30.25;SNPEFF_AMINO_ACID_CHANGE=A17T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10027528_10027630;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309065    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1455,108,0
4    10027643    rs6449237    A    G    769.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309065    GT:AD:DP:GQ:PL    1/1:0,25:25:69.15:803,69,0
4    10027744    rs6449238    G    A    196.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309065    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:230,18,0
4    10090178    rs4235349    T    C    162.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.14;SNPEFF_AMINO_ACID_CHANGE=I96V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10090139_10090250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443592    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:195,15,0
4    10099340    rs13441    T    C    2711.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=I185V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10099335_10099515;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382452    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2744,205,0
4    10100801    rs2241484    T    C    133.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3966;MQ=48.72;MQ0=0;QD=14.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382451    GT:AD:DP:GQ:PL    1/1:0,6:9:15.04:166,15,0
4    10100812    rs2241485    A    G    110.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=44.98;MQ0=0;QD=15.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382451    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:143,12,0
4    10105797    rs3756223    T    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382451    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    10118377    rs11557743    C    G    50.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=10.18;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509600    GT:AD:DP:GQ:PL    0/1:2,3:5:32.76:81,0,33
4    10446385    rs9291410    C    T    2565.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_AMINO_ACID_CHANGE=S523N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10441498_10448163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF518B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326756    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2598,193,0
4    10446906    rs10016022    A    G    2165.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.63;MQ0=0;QD=34.93;SNPEFF_AMINO_ACID_CHANGE=D349;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10441498_10448163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF518B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326756    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2198,166,0
4    10447640    rs10016702    A    G    711.37    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DB;DP=65;Dels=0.0;FS=11.29;HRun=2;HaplotypeScore=0.9967;MQ=59.65;MQ0=0;MQRankSum=-0.832;QD=10.94;ReadPosRankSum=0.034;SNPEFF_AMINO_ACID_CHANGE=S105P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10441498_10448163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF518B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326756    GT:AD:DP:GQ:PL    0/1:36,29:65:99:741,0,1160
4    10447907    rs72648876    C    T    1601.83    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=5.027;DB;DP=117;Dels=0.0;FS=6.002;HRun=0;HaplotypeScore=0.9734;MQ=59.93;MQ0=0;MQRankSum=0.205;QD=13.69;ReadPosRankSum=-0.685;SNPEFF_AMINO_ACID_CHANGE=G16R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10441498_10448163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF518B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326756    GT:AD:DP:GQ:PL    0/1:62,55:117:99:1632,0,1685
4    10447985    rs68000522    AT    A    661.14    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.293;DB;DP=48;FS=4.474;HRun=2;HaplotypeScore=171.5199;IndelType=D;MQ=60.45;MQ0=0;MQRankSum=0.01;QD=13.77;ReadPosRankSum=0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF518B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500268    GT:AD:DP:GQ:PL    0/1:26,22:48:99:700,0,1025
4    10491852    rs11725527    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    10502937    rs2903960    T    G    2824.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=I325;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10502880_10503035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429087    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2858,214,0
4    10503266    rs10022649    T    C    63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:95,9,0
4    10509699    rs2868941    T    C    1298.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.32;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.65;QD=30.91;ReadPosRankSum=1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    1/1:1,41:42:73.12:1331,73,0
4    10527342    rs2108878    C    T    432    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:465,36,0
4    10542058    rs1962796    C    G    743.81    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.174;DB;DP=69;Dels=0.0;FS=1.164;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=10.78;ReadPosRankSum=1.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    0/1:41,28:69:99:774,0,1236
4    10566188    rs17382991    G    A    375.69    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.82;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=12.95;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    0/1:16,13:29:99:406,0,543
4    10573175    rs11945572    G    A    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    0/1:2,2:4:67.99:70,0,68
4    10586376    rs6816045    C    G    67.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.21;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    0/1:3,3:6:97.25:97,0,101
4    10586571    rs61759824    G    A    997.61    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DB;DP=63;Dels=0.0;FS=3.47;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.266;QD=15.84;ReadPosRankSum=1.266;SNPEFF_AMINO_ACID_CHANGE=P31L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_10586551_10586579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    0/1:28,35:63:99:1028,0,731
4    10669522    rs13136927    A    C    268.99    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.522;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=57.6;MQ0=0;MQRankSum=1.183;QD=4.89;ReadPosRankSum=0.296;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_4_10669483_10669535;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226951    GT:AD:DP:GQ:PL    0/1:39,15:55:99:299,0,1143
4    11370295    rs6448673    C    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006230.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506906    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
4    13545792    rs9684692    G    T    660.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=R83;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_13545573_13546674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX3-2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382438    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:693,54,0
4    13571867    rs17806666    C    A    93.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.6624;MQ=57.66;MQ0=0;MQRankSum=-0.851;QD=9.33;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    0/1:5,5:10:99:123,0,171
4    13578405    rs2052159    A    G    2846.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7178;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509897    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2880,217,0
4    13583838    rs17806907    C    T    1293.28    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.165;DB;DP=104;Dels=0.0;FS=6.901;HRun=0;HaplotypeScore=0.9469;MQ=59.56;MQ0=0;MQRankSum=-0.919;QD=12.44;ReadPosRankSum=-0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511119    GT:AD:DP:GQ:PL    0/1:57,47:104:99:1323,0,1867
4    13584108    rs17745075    A    G    261.80    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=11;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=23.8;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    0/1:3,8:11:93.42:292,0,93
4    13589212    rs6838908    A    G    281.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:314,24,0
4    13589495    rs13104252    G    A    221.57    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=20.14;ReadPosRankSum=-1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    0/1:4,7:11:99:252,0,134
4    13601337    rs3733557    G    A    1752.98    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=4.018;DB;DP=140;Dels=0.0;FS=4.022;HRun=0;HaplotypeScore=3.8212;MQ=59.84;MQ0=0;MQRankSum=0.915;QD=12.52;ReadPosRankSum=-0.97;SNPEFF_AMINO_ACID_CHANGE=P2396L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_13600570_13606708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    0/1:76,64:140:99:1783,0,2254
4    13604034    rs61995956    T    C    1345.28    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.605;DB;DP=103;Dels=0.0;FS=0.749;HRun=0;HaplotypeScore=4.6755;MQ=56.83;MQ0=0;MQRankSum=0.197;QD=13.06;ReadPosRankSum=1.176;SNPEFF_AMINO_ACID_CHANGE=Q1497R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_13600570_13606708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    0/1:49,54:103:99:1375,0,1581
4    13606576    rs1971278    A    T    5164.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.86;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=L650I;SNPEFF_CODON_CHANGE=Tta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_13600570_13606708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5165,418,0
4    13606793    rs142382506    T    C    229.63    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=22.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    0/1:2,8:10:57.32:260,0,57
4    13608523    rs6822260    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
4    13615293    rs2109917    C    A    1697.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000040738    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1730,126,0
4    15005604    rs112476821    G    A    109.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.94;MQ0=0;QD=9.96;SNPEFF_AMINO_ACID_CHANGE=S436N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_15004298_15005959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442003    GT:AD:DP:GQ:PL    1/1:5,6:11:12.03:142,12,0
4    15009232    rs1874207    C    T    187.54    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=14.43;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259997    GT:AD:DP:GQ:PL    0/1:6,7:13:99:218,0,173
4    15059987    rs987399    A    G    862.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=22.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259997    GT:AD:DP:GQ:PL    1/1:0,39:39:90.04:896,90,0
4    15059988    rs79450450    A    G    937.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=24.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259997    GT:AD:DP:GQ:PL    1/1:0,39:39:96.03:971,96,0
4    15063545    rs2702572    C    T    76.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.77;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259997    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,105
4    15443685    rs13108125    T    G    735.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295297    GT:AD:DP:GQ:PL    1/1:0,21:21:60.16:768,60,0
4    15444544    rs2110362    C    A    286.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=35.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382383    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
4    15482477    rs10000250    A    G    1316.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1349,99,0
4    15513147    rs1058412    C    T    180.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=53.03;MQ0=0;QD=25.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:214,18,0
4    15530124    rs4698395    C    A    568.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.387;QD=28.43;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:1,19:20:12.94:601,13,0
4    15534646    rs11931401    C    T    296.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:329,24,0
4    15535095    rs7687556    A    G    337.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510220    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:370,30,0
4    15538744    rs1558572    T    G    646.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510220    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:680,51,0
4    15538922    rs2314645    G    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510220    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    15539498    rs1861044    A    G    1798.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=32.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510220    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1832,135,0
4    15569018    rs73125627    G    A    4700.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.83;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=S1018;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_15569000_15569105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4701,340,0
4    15587897    rs6832789    A    T    2532.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2565,190,0
4    15589314    rs6449150    C    G    842.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:876,66,0
4    15589345    rs28419165    C    T    1326.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1360,102,0
4    15597984    rs10212939    C    T    40.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389652    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
4    15602773    rs80080596    C    CTTA    1366.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=63.3154;IndelType=I;MQ=47.75;MQ0=0;QD=59.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513035    GT:AD:DP:GQ:PL    1/1:6,17:23:63.22:1409,63,0
4    15613780    rs9884443    T    C    749.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341285    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:782,57,0
4    15629803    rs4698402    G    A    141.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341285    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
4    15629827    rs4698403    T    G    120.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341285    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
4    15717321    rs3213710    G    A    768.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265016    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:801,60,0
4    15780358    rs11574921    G    A    42.27    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=8.45;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226279    GT:AD:DP:GQ:PL    0/1:1,4:5:29.55:72,0,30
4    15780443    rs62696760    T    G    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226279    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
4    15826362    rs67396676    A    T    298.51    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=24;Dels=0.0;FS=3.203;HRun=1;HaplotypeScore=0.0;MQ=58.52;MQ0=0;MQRankSum=0.708;QD=12.44;ReadPosRankSum=0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226279    GT:AD:DP:GQ:PL    0/1:12,11:24:99:329,0,411
4    15826415    .    G    GT    890.69    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.605;DP=80;FS=1.484;HRun=10;HaplotypeScore=244.7727;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=1.451;QD=11.13;ReadPosRankSum=0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226279    GT:AD:DP:GQ:PL    0/1:43,35:80:99:930,0,668
4    15836062    rs114178665    A    G    102.38    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.322;QD=12.8;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CD38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226279    GT:AD:DP:GQ:PL    0/1:3,5:8:99:132,0,104
4    15937731    rs2072313    T    C    1525.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=34.68;SNPEFF_AMINO_ACID_CHANGE=K175;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_15937195_15938275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259988    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1559,126,0
4    15964485    rs758329    G    A    1039.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.66;SNPEFF_AMINO_ACID_CHANGE=P90S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_15964061_15964859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259989    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1073,81,0
4    15964573    rs758328    A    G    1102.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.41;SNPEFF_AMINO_ACID_CHANGE=R60;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_15964061_15964859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259989    GT:AD:DP:GQ:PL    1/1:0,34:34:90.22:1135,90,0
4    15981885    rs3841512    G    GA    687.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=9;HaplotypeScore=153.2751;IndelType=I;MQ=40.81;MQ0=0;QD=27.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:5,20:25:66.18:729,66,0
4    15981926    rs71675065    TA    T    232.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.153;DB;DP=51;FS=0.0;HRun=17;HaplotypeScore=583.3175;IndelType=D;MQ=40.65;MQ0=0;MQRankSum=-0.336;QD=4.57;ReadPosRankSum=0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:37,9:51:40.38:275,40,0
4    15981942    .    AAG    A    281.93    PASS    AB=0.921;AC=1;AF=0.50;AN=2;BaseQRankSum=3.901;DP=58;FS=10.736;HRun=0;HaplotypeScore=591.8294;IndelType=D;MQ=42.89;MQ0=0;MQRankSum=-3.803;QD=4.86;ReadPosRankSum=-2.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    0/1:53,5:58:99:321,0,198
4    15981943    .    AG    A    360.57    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=4.607;DP=58;FS=18.425;HRun=1;HaplotypeScore=571.9436;IndelType=D;MQ=42.89;MQ0=0;MQRankSum=-2.074;QD=6.22;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    0/1:36,22:58:99:400,0,110
4    15982163    rs34269395    A    AG    1808.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=2;HaplotypeScore=147.4312;IndelType=I;MQ=55.63;MQ0=0;QD=39.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511270    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1851,132,0
4    15985984    rs3815344    G    C    1192.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.648;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9733;MQ=60.0;MQ0=0;MQRankSum=0.972;QD=28.38;ReadPosRankSum=-1.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511270    GT:AD:DP:GQ:PL    1/1:1,41:42:63.09:1225,63,0
4    15986042    rs7675574    G    A    1053.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511270    GT:AD:DP:GQ:PL    1/1:0,27:27:81.26:1087,81,0
4    15986113    rs7659341    T    C    170.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511270    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:204,18,0
4    15987505    .    A    AT    244.64    PASS    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=0.687;DP=48;FS=15.131;HRun=0;HaplotypeScore=667.5457;IndelType=I;MQ=42.16;MQ0=0;MQRankSum=-2.351;QD=5.1;ReadPosRankSum=0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    0/1:39,9:48:99:284,0,1242
4    15987508    rs147431958    A    AG    232.04    PASS    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=0.642;DB;DP=44;FS=19.097;HRun=0;HaplotypeScore=662.019;IndelType=I;MQ=40.15;MQ0=0;MQRankSum=-2.941;QD=5.27;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    0/1:35,9:44:99:271,0,737
4    15987509    .    T    TTTAAG    2589.87    PASS    AC=2;AF=1.00;AN=2;DP=49;FS=0.0;HRun=0;HaplotypeScore=728.2704;IndelType=I;MQ=39.87;MQ0=0;QD=52.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:33,15:49:99:2632,122,0
4    15987510    rs6148316    TA    T    1158.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.998;DB;DP=47;FS=20.311;HRun=1;HaplotypeScore=596.9714;IndelType=D;MQ=38.42;MQ0=0;MQRankSum=1.146;QD=24.66;ReadPosRankSum=1.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:29,18:47:45.82:1201,46,0
4    15987514    .    A    AGT    905.22    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.402;DP=33;FS=23.087;HRun=0;HaplotypeScore=512.1603;IndelType=I;MQ=30.41;MQ0=0;MQRankSum=1.002;QD=27.43;ReadPosRankSum=1.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    0/1:15,18:33:99:944,0,361
4    15987515    .    A    ATGCT    1339.19    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.402;DP=33;FS=23.087;HRun=0;HaplotypeScore=508.1914;IndelType=I;MQ=30.41;MQ0=0;MQRankSum=-0.747;QD=40.58;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    0/1:15,18:33:99:1378,0,693
4    16002050    rs6449212    T    C    2205.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=38.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2239,169,0
4    16024885    rs2013854    A    G    1751.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.82;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1784,156,0
4    16025837    rs17478336    C    T    2109.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2142,160,0
4    16035295    rs59386262    C    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
4    16037084    rs2292804    C    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    16037352    rs2078622    C    T    4699.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447510    GT:AD:DP:GQ:PL    1/1:0,143:143:99:4699,352,0
4    16168512    rs11724423    C    A    935.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304584    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:968,72,0
4    16168581    rs10939651    T    C    185.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=52.65;MQ0=0;QD=18.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304584    GT:AD:DP:GQ:PL    1/1:1,9:10:21.02:218,21,0
4    16172181    rs1662654    C    T    661.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304584    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:694,51,0
4    16188268    rs140421029    A    G    415.36    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=33;Dels=0.0;FS=3.29;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.813;QD=12.59;ReadPosRankSum=1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505152    GT:AD:DP:GQ:PL    0/1:18,15:33:99:445,0,656
4    16189991    rs75841626    A    T    1015.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=26.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505317    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1048,99,0
4    16190073    rs28645901    T    G    86.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505317    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
4    16192413    rs7666361    C    T    1691.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304584    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1725,126,0
4    16215537    rs12651110    T    G    3397.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399920    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3398,247,0
4    16504082    rs872479    C    T    188.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=20.99;ReadPosRankSum=1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503178    GT:AD:DP:GQ:PL    0/1:3,6:9:95.69:219,0,96
4    16510131    rs9993371    C    T    857.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.934;DB;DP=54;Dels=0.0;FS=1.154;HRun=3;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;MQRankSum=-0.97;QD=15.88;ReadPosRankSum=1.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503153    GT:AD:DP:GQ:PL    0/1:27,27:54:99:888,0,766
4    16590223    rs906122    G    C    105.66    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.74;ReadPosRankSum=1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508804    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,144
4    16597280    rs1506462    T    A    1036.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304523    GT:AD:DP:GQ:PL    1/1:0,28:28:81.22:1069,81,0
4    16899946    rs7690911    A    G    505.87    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.986;DB;DP=43;Dels=0.0;FS=5.146;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.839;QD=11.76;ReadPosRankSum=-0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304523    GT:AD:DP:GQ:PL    0/1:21,22:43:99:536,0,720
4    17494054    rs2597772    A    G    159.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281243    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
4    17503382    rs2597775    C    T    266.24    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.669;QD=12.68;ReadPosRankSum=-2.007;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17503342_17503482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QDPR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428702    GT:AD:DP:GQ:PL    0/1:10,11:21:99:296,0,314
4    17503433    rs3733570    C    T    468.62    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.302;QD=14.64;ReadPosRankSum=-0.302;SNPEFF_AMINO_ACID_CHANGE=S115;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17503342_17503482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QDPR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281243    GT:AD:DP:GQ:PL    0/1:15,17:32:99:499,0,471
4    17503544    rs2597776    C    T    246.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=20;Dels=0.0;FS=6.419;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=12.31;ReadPosRankSum=1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281243    GT:AD:DP:GQ:PL    0/1:12,8:20:99:276,0,323
4    17503551    rs3733572    A    G    217.98    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=16;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=13.62;ReadPosRankSum=-1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281243    GT:AD:DP:GQ:PL    0/1:7,9:16:99:248,0,248
4    17511242    rs3733575    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281243    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    17516771    rs2597784    C    T    123.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=30.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511148    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
4    17517099    rs1551091    A    G    1803.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.2;SNPEFF_AMINO_ACID_CHANGE=K70;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17516788_17517142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511148    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1836,144,0
4    17520096    rs2122571    A    C    1350.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511148    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1383,108,0
4    17520383    rs71651847    T    TA    453.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=98.1656;IndelType=I;MQ=56.55;MQ0=0;QD=21.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511148    GT:AD:DP:GQ:PL    1/1:3,17:21:51.08:495,51,0
4    17579155    rs148471769    G    C    58.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=11.66;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=G23R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17578815_17579190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226299    GT:AD:DP:GQ:PL    1/1:1,4:5:6.02:90,6,0
4    17581617    rs10939736    T    A    1638.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.98;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226299    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1671,138,0
4    17581643    rs76349938    CAG    C    1319.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=216.6715;IndelType=D;MQ=60.63;MQ0=0;QD=38.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226299    GT:AD:DP:GQ:PL    1/1:3,31:34:93.31:1361,93,0
4    17583200    rs5856433    TAA    T    203.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=14;HaplotypeScore=68.4145;IndelType=D;MQ=58.63;MQ0=0;QD=22.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226299    GT:AD:DP:GQ:PL    1/1:1,8:9:27.02:246,27,0
4    17583806    rs2010053    A    C    289.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508497    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
4    17585014    rs1476836    G    C    1445.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508497    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1479,108,0
4    17586703    rs3733576    T    C    2087.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=30.7;SNPEFF_AMINO_ACID_CHANGE=A216;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17586595_17586759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226299    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2121,160,0
4    17586957    rs7670500    A    G    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507960    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
4    17590671    rs17499929    G    A    1315.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7653;MQ=56.62;MQ0=0;QD=31.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507960    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1348,108,0
4    17590686    rs112362430    AT    A    404    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.568;DB;DP=39;FS=0.0;HRun=15;HaplotypeScore=372.0338;IndelType=D;MQ=56.94;MQ0=0;MQRankSum=0.367;QD=10.36;ReadPosRankSum=0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507960    GT:AD:DP:GQ:PL    1/1:9,29:39:11.49:445,11,0
4    17590734    rs11737120    A    T    852.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=37.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507960    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:885,66,0
4    17608299    rs2058336    T    C    111.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504614    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:144,12,0
4    17608620    rs4698628    A    G    689.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.84;MQ0=0;QD=34.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504614    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:723,54,0
4    17608884    rs4698629    C    G    128.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504614    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
4    17616214    rs2286773    C    A    350.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237380    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:383,30,0
4    17621383    rs7673500    C    T    72.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237380    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
4    17625209    rs11733730    G    C    911.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=36.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506409    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:945,69,0
4    17634255    rs6847966    G    A    269.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=8.9798;MQ=53.36;MQ0=0;QD=24.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:302,24,0
4    17634256    .    C    CAA    448.04    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=7;HaplotypeScore=82.93;IndelType=I;MQ=53.36;MQ0=0;QD=40.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:490,30,0
4    17635556    rs3214319    CAAAAT    C    591.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=65.699;IndelType=D;MQ=49.8;MQ0=0;QD=59.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:633,30,0
4    17636507    rs3214318    G    GT    489.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.004;DB;DP=19;FS=0.0;HRun=10;HaplotypeScore=60.7408;IndelType=I;MQ=61.13;MQ0=0;MQRankSum=1.187;QD=25.77;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:1,17:19:32.33:532,32,0
4    17638020    rs7659718    A    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
4    17640858    rs6811887    C    T    235.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:268,21,0
4    17649233    rs3733577    T    G    236.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
4    17654648    rs3815413    T    C    163.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,8:8:15.02:196,15,0
4    17660082    rs1860596    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_AMINO_ACID_CHANGE=R643H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17659973_17660185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    17689901    rs113329120    AT    A    74.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=12;HaplotypeScore=14.2157;IndelType=D;MQ=60.0;MQ0=0;QD=12.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:1,5:6:14.94:116,15,0
4    17689974    rs4698646    T    C    419.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:452,33,0
4    17694880    rs6449324    G    C    1743.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1776,135,0
4    17694916    rs3822235    A    G    1787.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=59.27;MQ0=0;QD=28.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1821,150,0
4    17694943    rs3733579    A    G    1910.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=32.94;SNPEFF_AMINO_ACID_CHANGE=L490;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17694925_17695035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1944,150,0
4    17706439    rs1122675    A    G    82.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
4    17707032    rs79785054    G    A    31.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:63,6,0
4    17707301    rs72619125    C    T    367.63    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.339;DB;DP=24;Dels=0.0;FS=2.291;HRun=1;HaplotypeScore=1.79;MQ=59.03;MQ0=0;MQRankSum=-0.4;QD=15.32;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    0/1:11,13:24:99:398,0,384
4    17707361    rs57570581    G    A    683.11    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.137;DB;DP=55;Dels=0.0;FS=1.191;HRun=0;HaplotypeScore=1.832;MQ=59.58;MQ0=0;MQRankSum=-1.034;QD=12.42;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    0/1:28,26:55:99:713,0,770
4    17707627    rs62295656    C    A    311.15    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.317;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.07;MQ0=0;MQRankSum=-0.927;QD=12.45;ReadPosRankSum=-0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    0/1:13,12:25:99:341,0,447
4    17707668    rs2215268    T    C    96.96    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=8.81;ReadPosRankSum=2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    0/1:5,6:11:99:127,0,175
4    17711076    rs3733583    T    C    80.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=8.9;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Q111;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17710515_17711267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265018    GT:AD:DP:GQ:PL    0/1:4,5:9:99:110,0,111
4    17813711    rs1395371    T    C    37.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.44;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251496    GT:AD:DP:GQ:PL    0/1:3,2:5:67.19:67,0,98
4    17818885    rs2302212    T    C    661.95    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.82;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;MQRankSum=1.16;QD=14.08;ReadPosRankSum=0.564;SNPEFF_AMINO_ACID_CHANGE=D259;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_17818884_17819076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251496    GT:AD:DP:GQ:PL    0/1:23,24:47:99:692,0,662
4    17841465    rs2286537    A    G    369.95    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.432;DB;DP=30;Dels=0.0;FS=1.71;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.229;QD=12.33;ReadPosRankSum=-2.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCORL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326877    GT:AD:DP:GQ:PL    0/1:16,14:30:99:400,0,593
4    17841948    rs2286534    T    A    110.48    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.061;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.219;QD=5.52;ReadPosRankSum=-0.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCORL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326877    GT:AD:DP:GQ:PL    0/1:14,6:20:99:140,0,469
4    17844029    rs17585261    G    A    287.03    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.457;QD=15.95;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCORL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326877    GT:AD:DP:GQ:PL    0/1:7,11:18:99:317,0,159
4    17845238    rs7688403    G    C    83.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=9.25;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCORL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510121    GT:AD:DP:GQ:PL    0/1:5,4:9:99:113,0,177
4    17875735    rs78581007    TCTC    T    2652.69    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=9.225;DB;DP=132;FS=7.997;HRun=0;HaplotypeScore=506.1622;IndelType=D;MQ=58.56;MQ0=0;MQRankSum=-1.102;QD=20.1;ReadPosRankSum=0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCORL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326877    GT:AD:DP:GQ:PL    0/1:70,62:132:99:2692,0,4246
4    17885296    rs66721989    A    AAC    759.92    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.146;DB;DP=33;FS=3.912;HRun=0;HaplotypeScore=109.0159;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=2.225;QD=23.03;ReadPosRankSum=-0.882;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCORL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326877    GT:AD:DP:GQ:PL    0/1:14,18:33:99:799,0,357
4    20255306    rs7655084    G    T    278.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_20255213_20255617;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:311,24,0
4    20255872    rs7685284    T    G    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
4    20270600    rs2196476    G    A    918.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8316;MQ=59.03;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:952,72,0
4    20487687    rs7667691    G    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:2,2:4:59.52:72,0,60
4    20490710    rs543593    T    G    376.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508824    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
4    20520993    rs519813    T    C    783.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    1/1:0,23:23:60.17:817,60,0
4    20525537    rs2292438    G    A    1446.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=106;Dels=0.0;FS=4.935;HRun=2;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=0.036;QD=13.65;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:53,53:106:99:1476,0,1613
4    20526985    rs71181569    C    CAT    260.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=12.8457;IndelType=I;MQ=61.78;MQ0=0;QD=43.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:302,18,0
4    20530374    rs9992559    T    C    90.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
4    20533700    rs5856564    A    AT    264.34    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.56;DB;DP=29;FS=0.0;HRun=8;HaplotypeScore=71.2889;IndelType=I;MQ=60.37;MQ0=0;MQRankSum=0.52;QD=9.12;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:18,11:29:99:303,0,309
4    20535460    rs74466092    T    TTC    244.56    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=45.1109;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=18.81;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:7,6:13:99:284,0,211
4    20535502    rs1092406    T    C    132.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=13.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:4,6:10:92.06:162,0,92
4    20535547    rs2446089    C    T    39.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:2,2:4:40.34:70,0,40
4    20541005    rs35993588    AG    A    618.18    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=5.669;DB;DP=45;FS=0.0;HRun=2;HaplotypeScore=193.4829;IndelType=D;MQ=59.46;MQ0=0;MQRankSum=-0.223;QD=13.74;ReadPosRankSum=0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:23,22:45:99:657,0,825
4    20543888    rs1457912    T    C    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509099    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
4    20547532    rs12501787    C    A    220.51    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=24.5;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:2,7:9:49.03:251,0,49
4    20547578    rs12501870    G    C    348.50    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=1.557;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=24.89;ReadPosRankSum=-1.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:3,11:14:74.30:378,0,74
4    20552510    rs17542486    A    C    713.74    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.125;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.64;QD=14.87;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=A51;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_20552450_20552521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511508    GT:AD:DP:GQ:PL    0/1:23,25:48:99:744,0,732
4    20569099    rs2290750    A    G    682.76    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=64;Dels=0.0;FS=7.156;HRun=0;HaplotypeScore=1.4942;MQ=60.0;MQ0=0;MQRankSum=3.317;QD=10.67;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:37,27:64:99:713,0,1231
4    20569254    rs12506323    A    G    512.16    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.576;DB;DP=31;Dels=0.0;FS=1.779;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.456;QD=16.52;ReadPosRankSum=-0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:14,17:31:99:542,0,440
4    20569259    rs2290751    C    T    474.79    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.507;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.013;QD=16.96;ReadPosRankSum=-0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:13,15:28:99:505,0,355
4    20570270    rs11723253    G    A    83.80    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.95;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:1,3:4:14.64:114,0,15
4    20597097    rs10633957    T    TATC    628.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=30.4934;IndelType=I;MQ=48.48;MQ0=0;QD=62.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    1/1:1,9:10:30.10:670,30,0
4    20599694    rs6819634    C    T    129.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
4    20599758    rs3775833    C    T    91.86    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.61;MQ0=0;MQRankSum=1.893;QD=6.12;ReadPosRankSum=0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:11,4:15:99:122,0,369
4    20599783    rs67622693    CAT    C    264.33    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=4.254;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=156.762;IndelType=D;MQ=57.76;MQ0=0;MQRankSum=0.86;QD=8.26;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:23,9:32:99:303,0,1127
4    20599796    rs12507257    A    G    216.47    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.23;DB;DP=32;Dels=0.0;FS=2.722;HRun=0;HaplotypeScore=0.0;MQ=58.15;MQ0=0;MQRankSum=-1.428;QD=6.76;ReadPosRankSum=-1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273739    GT:AD:DP:GQ:PL    0/1:21,11:32:99:246,0,745
4    20620683    rs1379659    G    A    953.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508541    GT:AD:DP:GQ:PL    1/1:0,30:30:72.22:987,72,0
4    20709411    rs57364495    C    T    487.94    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=34;Dels=0.0;FS=1.585;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=14.35;ReadPosRankSum=-0.892;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511160    GT:AD:DP:GQ:PL    0/1:15,19:34:99:518,0,451
4    20714642    rs3764964    T    G    289.35    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.144;QD=17.02;ReadPosRankSum=0.914;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509469    GT:AD:DP:GQ:PL    0/1:8,9:17:99:319,0,289
4    20714653    rs3764965    G    T    646.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509469    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:680,51,0
4    20714684    rs3764966    A    G    298.37    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.395;QD=17.55;ReadPosRankSum=-1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509469    GT:AD:DP:GQ:PL    0/1:8,9:17:99:328,0,274
4    20714719    rs3764967    C    A    166.35    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.749;QD=15.12;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509469    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,174
4    20714788    rs3815872    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509469    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    20715244    rs62410126    A    T    235.86    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=58.2;MQ0=0;MQRankSum=0.077;QD=18.14;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503747    GT:AD:DP:GQ:PL    0/1:4,9:13:99:266,0,111
4    20715300    rs2114472    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503747    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    20726537    rs10654905    C    CT    653.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=9;HaplotypeScore=118.1436;IndelType=I;MQ=60.49;MQ0=0;QD=21.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382148    GT:AD:DP:GQ:PL    1/1:3,17:31:82.32:695,82,0
4    20733708    rs111474115    C    CA    1054.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=5;HaplotypeScore=57.2742;IndelType=I;MQ=60.34;MQ0=0;QD=37.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295290    GT:AD:DP:GQ:PL    1/1:0,28:28:84.27:1096,84,0
4    20734176    rs6811933    C    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACRGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295290    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
4    20736090    rs6447976    C    T    189.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=21.02;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359001    GT:AD:DP:GQ:PL    0/1:3,6:9:87.03:219,0,87
4    20736416    rs112956417    A    AAAAC    1005.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.367;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=107.5511;IndelType=I;MQ=57.47;MQ0=0;MQRankSum=0.814;QD=31.43;ReadPosRankSum=-0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359001    GT:AD:DP:GQ:PL    0/1:16,16:32:99:1045,0,465
4    20751278    rs2322688    A    G    497.91    PASS    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=0.782;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.777;QD=19.92;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359001    GT:AD:DP:GQ:PL    0/1:5,19:24:99:528,0,115
4    20760644    rs57740160    A    G    113.20    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=16.17;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359001    GT:AD:DP:GQ:PL    0/1:2,5:7:63.82:143,0,64
4    20851938    rs3765118    T    A    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.8;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359001    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,70
4    20851969    rs3765119    C    T    356.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359001    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:389,30,0
4    20852001    rs3765120    A    T    780.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359001    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:813,63,0
4    20852166    rs3765121    A    G    2923.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.75;MQ0=0;MQRankSum=0.987;QD=31.11;ReadPosRankSum=-0.987;SNPEFF_AMINO_ACID_CHANGE=N34;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_20852166_20852290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359001    GT:AD:DP:GQ:PL    1/1:1,93:94:99:2957,221,0
4    20852244    rs3765122    A    G    1448.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.05;MQ0=0;QD=29.57;SNPEFF_AMINO_ACID_CHANGE=P36;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_20852166_20852290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447367    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1482,114,0
4    21698777    rs4507349    G    T    30.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=7.73;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382148    GT:AD:DP:GQ:PL    0/1:2,2:4:57.31:61,0,57
4    21950259    rs6448102    A    G    923.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515786    GT:AD:DP:GQ:PL    1/1:0,32:32:72.22:956,72,0
4    22390961    .    T    C    251.31    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.0;QD=22.85;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504617    GT:AD:DP:GQ:PL    0/1:3,8:11:94.42:281,0,94
4    22403329    rs10601196    CAT    C    208.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=24.1905;IndelType=D;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334304    GT:AD:DP:GQ:PL    1/1:1,5:6:18.03:250,18,0
4    22414708    rs7697042    A    C    715.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;QD=21.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506155    GT:AD:DP:GQ:PL    1/1:0,33:33:66.17:748,66,0
4    22426147    rs2126632    A    C    294.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334304    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
4    22426169    rs2169606    G    A    252.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334304    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
4    22439914    rs6823735    A    C    2795.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=P124;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_22439879_22440043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR125;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508133    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2829,220,0
4    22444692    rs10018144    C    T    1187.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513385    GT:AD:DP:GQ:PL    1/1:0,37:38:90.28:1220,90,0
4    22457478    rs16872669    C    T    474.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GPR125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334304    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:507,42,0
4    22748756    rs1032147    G    A    219.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503442    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:252,18,0
4    22820504    rs358231    A    T    1565.95    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.144;DB;DP=104;Dels=0.0;FS=0.781;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-1.336;QD=15.06;ReadPosRankSum=1.435;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=GBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503442    GT:AD:DP:GQ:PL    0/1:53,51:104:99:1596,0,1585
4    23803516    .    AAAG    A    297.33    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DP=19;FS=0.0;HRun=0;HaplotypeScore=72.0947;IndelType=D;MQ=59.93;MQ0=0;MQRankSum=0.619;QD=15.65;ReadPosRankSum=-0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPARGC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264867    GT:AD:DP:GQ:PL    0/1:11,8:19:99:336,0,654
4    23815125    rs2932967    G    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPARGC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509642    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    23815924    rs2970847    T    C    1722.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=T394;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_23815313_23816228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPARGC1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264867    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1756,135,0
4    23816242    rs72337632    TA    T    259.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.347;DB;DP=33;FS=0.0;HRun=17;HaplotypeScore=310.4012;IndelType=D;MQ=51.73;MQ0=0;MQRankSum=0.763;QD=7.86;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPARGC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264867    GT:AD:DP:GQ:PL    1/1:9,17:33:49.27:301,49,0
4    23825732    rs56881226    T    G    89.59    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=17.92;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPARGC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508380    GT:AD:DP:GQ:PL    0/1:1,4:5:13.61:119,0,14
4    23829862    rs3774907    G    A    120.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPARGC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507342    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
4    23886323    rs2946385    G    T    1119.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=R96;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_23884302_23886554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPARGC1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507380    GT:AD:DP:GQ:PL    1/1:0,35:35:87.26:1152,87,0
4    24534687    rs3828558    T    C    1717.91    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.38;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.841;QD=16.36;ReadPosRankSum=0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DHX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336812    GT:AD:DP:GQ:PL    0/1:47,58:105:99:1748,0,1414
4    24538573    rs4697063    A    G    61.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=6.8;ReadPosRankSum=1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DHX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503562    GT:AD:DP:GQ:PL    0/1:6,3:9:91.22:91,0,218
4    24541623    rs3749588    C    G    248.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=16.54;ReadPosRankSum=1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DHX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336812    GT:AD:DP:GQ:PL    0/1:6,9:15:99:278,0,204
4    24557720    rs4697064    A    G    119.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DHX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336812    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
4    24801315    rs2536512    G    A    306.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=A58T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_24801128_24802464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382120    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:340,27,0
4    24809884    rs1019229    T    C    177.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC149;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507096    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
4    24810577    .    C    T    151.09    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC149;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382116    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:181,0,24
4    24878490    rs10002411    C    T    165.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC149;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382116    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
4    25005023    rs2232029    C    T    233.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282970    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:266,21,0
4    25005193    rs2232028    G    A    1984.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=Y154;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_25003397_25005538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282970    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2018,147,0
4    25005454    rs2232025    G    A    2603.42    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.646;DB;DP=203;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=2.4637;MQ=59.77;MQ0=0;MQRankSum=0.432;QD=12.82;ReadPosRankSum=0.826;SNPEFF_AMINO_ACID_CHANGE=D419;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_25000469_25005890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382114    GT:AD:DP:GQ:PL    0/1:110,93:203:99:2633,0,3095
4    25014191    rs6826019    G    T    188.26    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=11.77;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282970    GT:AD:DP:GQ:PL    0/1:9,7:16:99:218,0,313
4    25028786    rs6448325    C    G    94.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382114    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
4    25146307    rs2302565    G    A    534.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPSECS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302922    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:567,42,0
4    25156483    rs3733548    A    G    185.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPSECS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513285    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:219,18,0
4    25253995    rs313567    C    T    1691.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=A107;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_25253943_25254097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PI4K2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264864    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1725,126,0
4    25278988    rs3796780    T    C    116.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PI4K2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512921    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
4    25315637    rs61227153    C    CTT    1419.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=15;HaplotypeScore=530.9301;IndelType=I;MQ=45.64;MQ0=0;QD=23.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZCCHC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302874    GT:AD:DP:GQ:PL    1/1:16,22:61:99:1462,149,0
4    25316815    rs12508686    T    C    501.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZCCHC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302874    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:534,42,0
4    25363901    rs315675    T    A    1136.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=L396H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_25363848_25363923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZCCHC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302874    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1170,87,0
4    25370962    rs315689    A    T    287.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZCCHC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507760    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:320,24,0
4    25385169    rs72366069    A    AT    117.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=16.8133;IndelType=I;MQ=61.78;MQ0=0;QD=19.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507809    GT:AD:DP:GQ:PL    1/1:1,5:6:15.04:159,15,0
4    25391584    rs186408    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505991    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    25392728    rs2271389    G    A    309.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505080    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:342,27,0
4    25393889    rs2292407    C    T    646.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505080    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:679,51,0
4    25394078    rs2292408    A    G    1043.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505080    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1076,78,0
4    25394221    rs2292409    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505080    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
4    25395674    rs17605267    C    A    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505080    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    25404553    rs10023139    C    T    443.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315368    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:477,36,0
4    25408516    rs3214034    T    A    411.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315368    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:445,33,0
4    25408724    rs28616687    A    G    444.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315368    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:478,39,0
4    25411202    rs2305953    T    G    35.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
4    25415106    rs1993602    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503805    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    25415810    rs55714412    C    A    196.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503805    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
4    25417244    rs3816587    C    T    384.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505842    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:417,33,0
4    25417333    rs41267453    G    C    85.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505842    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
4    25418331    rs1017716    T    G    409.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505842    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:443,33,0
4    25419283    rs9174    T    C    2459.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=31.13;SNPEFF_AMINO_ACID_CHANGE=F707;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_25419238_25419361;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315368    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2492,199,0
4    25674904    .    C    CT    476.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.185;DP=39;FS=0.0;HRun=1;HaplotypeScore=774.6091;IndelType=I;MQ=30.2;MQ0=0;MQRankSum=-0.821;QD=12.21;ReadPosRankSum=-0.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510033    GT:AD:DP:GQ:PL    1/1:12,27:39:92.36:518,92,0
4    25674907    .    A    AGG    764.55    PASS    AC=2;AF=1.00;AN=2;DP=28;FS=0.0;HRun=0;HaplotypeScore=555.7896;IndelType=I;MQ=29.0;MQ0=0;QD=27.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510033    GT:AD:DP:GQ:PL    1/1:0,28:28:83.96:807,84,0
4    25674911    rs113837596    GTA    G    686.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=563.6293;IndelType=D;MQ=29.0;MQ0=0;QD=24.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510033    GT:AD:DP:GQ:PL    1/1:0,28:28:83.54:728,84,0
4    25678199    rs6448389    A    G    411.67    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.02;DB;DP=24;Dels=0.0;FS=1.569;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.439;QD=17.15;ReadPosRankSum=-0.556;SNPEFF_AMINO_ACID_CHANGE=D633G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_25677757_25678371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000503434    GT:AD:DP:GQ:PL    0/1:10,14:24:99:442,0,316
4    25767133    rs6823220    A    T    598.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9125;MQ=59.51;MQ0=0;MQRankSum=-0.725;QD=12.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509290    GT:AD:DP:GQ:PL    0/1:23,23:47:99:629,0,696
4    25767183    rs4697616    G    A    237.07    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6939;MQ=58.95;MQ0=0;MQRankSum=0.616;QD=10.78;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509290    GT:AD:DP:GQ:PL    0/1:13,8:22:99:267,0,468
4    25769135    rs2290577    T    C    349.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=30;Dels=0.0;FS=1.664;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.788;QD=11.67;ReadPosRankSum=-0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509290    GT:AD:DP:GQ:PL    0/1:15,15:30:99:380,0,437
4    25780891    rs4697619    A    G    701.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=60;Dels=0.0;FS=8.913;HRun=1;HaplotypeScore=0.9469;MQ=59.23;MQ0=0;MQRankSum=-1.848;QD=11.69;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264868    GT:AD:DP:GQ:PL    0/1:36,24:60:99:731,0,1255
4    25790077    rs9985515    G    A    435.69    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.74;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.548;QD=11.78;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264868    GT:AD:DP:GQ:PL    0/1:23,14:37:99:466,0,836
4    25792258    rs28595330    A    G    68.93    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.959;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.9874;MQ=51.24;MQ0=0;MQRankSum=-2.664;QD=3.0;ReadPosRankSum=-2.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264868    GT:AD:DP:GQ:PL    0/1:18,5:23:98.92:99,0,499
4    25792262    .    A    G    33.33    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.65;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.9907;MQ=49.79;MQ0=0;MQRankSum=-2.85;QD=1.67;ReadPosRankSum=-2.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264868    GT:AD:DP:GQ:PL    0/1:16,4:20:63.32:63,0,428
4    25792290    rs62411799    G    A    125.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.956;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=46.75;MQ0=0;MQRankSum=1.92;QD=12.57;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264868    GT:AD:DP:GQ:PL    1/1:5,5:10:15.03:158,15,0
4    25792294    .    G    A    90.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.322;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=46.75;MQ0=0;MQRankSum=1.92;QD=9.05;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264868    GT:AD:DP:GQ:PL    1/1:5,5:10:12.02:123,12,0
4    25803830    rs3733543    A    G    137.81    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=19.69;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264868    GT:AD:DP:GQ:PL    0/1:2,5:7:63.71:168,0,64
4    26322759    rs113697915    C    A    358.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342295    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:392,30,0
4    26364300    rs13116873    C    G    558.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342295    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:591,42,0
4    26387959    rs66634602    AT    A    327.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=56.8547;IndelType=D;MQ=60.67;MQ0=0;QD=20.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342295    GT:AD:DP:GQ:PL    1/1:1,15:16:44.95:370,45,0
4    26407681    rs3109839    A    G    684.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342295    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:718,54,0
4    26417136    rs2270226    T    C    3806.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.906;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9981;MQ=59.58;MQ0=0;MQRankSum=0.842;QD=34.29;ReadPosRankSum=-0.683;SNPEFF_AMINO_ACID_CHANGE=S101;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_26417097_26417262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPJ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510778    GT:AD:DP:GQ:PL    1/1:1,110:111:99:3806,252,0
4    26422507    rs17639483    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504938    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    26431386    rs946346    A    G    86.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506903    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
4    26585881    rs4692549    C    T    203.59    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=20;Dels=0.0;FS=7.701;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=0.684;QD=10.18;ReadPosRankSum=-0.152;SNPEFF_AMINO_ACID_CHANGE=S22;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_26585538_26585914;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264866    GT:AD:DP:GQ:PL    0/1:11,9:20:99:234,0,356
4    26615982    rs260954    C    T    786.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264866    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:820,60,0
4    26616004    rs76113874    T    G    421.14    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=27;Dels=0.0;FS=4.407;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.326;QD=15.6;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264866    GT:AD:DP:GQ:PL    0/1:10,17:27:99:451,0,313
4    26673761    rs9997999    T    A    447.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264866    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:481,42,0
4    26673787    rs7691219    A    G    582.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_AMINO_ACID_CHANGE=E162;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_26673771_26673809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505206    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:615,45,0
4    26685105    rs13146364    A    G    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264866    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
4    26721578    rs4590010    T    C    355.04    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.479;QD=18.69;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264866    GT:AD:DP:GQ:PL    0/1:7,12:19:99:385,0,222
4    26737063    rs111844869    C    CT    235.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DB;DP=13;FS=0.0;HRun=11;HaplotypeScore=42.923;IndelType=I;MQ=59.9;MQ0=0;MQRankSum=-0.791;QD=18.1;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264866    GT:AD:DP:GQ:PL    1/1:3,10:13:9.95:277,10,0
4    27000995    rs6822297    A    G    1183.02    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.848;DB;DP=72;Dels=0.0;FS=2.098;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.729;QD=16.43;ReadPosRankSum=-1.288;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478049    GT:AD:DP:GQ:PL    0/1:33,39:72:99:1213,0,1000
4    27004011    rs10028164    G    A    1469.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.52;MQ0=0;QD=30.62;SNPEFF_AMINO_ACID_CHANGE=Q266;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_27003839_27004016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000465503    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1503,114,0
4    27004490    rs5856961    T    TA    166.90    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.436;DB;DP=19;FS=3.757;HRun=9;HaplotypeScore=43.5508;IndelType=I;MQ=59.36;MQ0=0;MQRankSum=1.775;QD=8.78;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463501    GT:AD:DP:GQ:PL    0/1:11,8:19:99:206,0,229
4    27209449    rs1488267    A    G    4183.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.24;MQ0=0;QD=34.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC024132.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382007    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4183,334,0
4    27209559    rs1488268    G    T    2653.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=31.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC024132.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382007    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2686,208,0
4    27209562    rs1488269    C    T    2722.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=33.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC024132.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382007    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2755,208,0
4    30922078    rs11735048    A    C    197.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333135    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
4    30976765    rs72388939    TTGTGTGTGTG    T    960.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=422.3246;IndelType=D;MQ=50.94;MQ0=0;MQRankSum=0.063;QD=24.62;ReadPosRankSum=2.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333135    GT:AD:DP:GQ:PL    1/1:22,15:39:14.38:1002,14,0
4    30977047    rs28414371    A    G    83.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333135    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    31143818    rs7675916    C    T    34.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333135    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
4    36069805    rs7657166    G    A    2136.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.38;MQ0=0;QD=35.62;SNPEFF_AMINO_ACID_CHANGE=A1613;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_36067620_36069900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2170,163,0
4    36081878    rs4833069    C    T    1341.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.73;SNPEFF_AMINO_ACID_CHANGE=R1523Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_36081838_36081901;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1375,102,0
4    36109409    rs7688562    C    G    581.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.92;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:614,48,0
4    36109440    rs71888363    CTTATG    C    524.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=91.7811;IndelType=D;MQ=37.32;MQ0=0;QD=52.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:567,27,0
4    36116111    rs1510643    C    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
4    36123024    rs1397423    A    G    452.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:485,36,0
4    36129996    rs1397420    A    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    36130099    rs6148397    T    TACACAC    1051.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=79.2665;IndelType=I;MQ=39.05;MQ0=0;QD=75.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:3,9:14:36.12:1093,36,0
4    36130375    rs5857473    TA    T    700.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=11;HaplotypeScore=96.0158;IndelType=D;MQ=59.96;MQ0=0;QD=19.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:5,30:36:91.91:742,92,0
4    36149025    rs1567483    G    A    2995.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2337;MQ=59.26;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512804    GT:AD:DP:GQ:PL    1/1:1,87:88:99:3028,232,0
4    36149113    rs1567484    C    T    1462.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512804    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1495,111,0
4    36160340    rs1546495    G    T    759.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508066    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:792,60,0
4    36160603    rs17457286    G    A    238.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508066    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:272,21,0
4    36162273    rs11431961    C    CA    546.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.77;DB;DP=24;FS=4.715;HRun=10;HaplotypeScore=59.6586;IndelType=I;MQ=61.78;MQ0=0;MQRankSum=-0.286;QD=22.77;ReadPosRankSum=1.999;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:7,17:24:25.15:589,25,0
4    36162923    rs2271330    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
4    36179343    rs4832797    T    C    577.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:611,45,0
4    36211914    rs4394022    C    A    121.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303965    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
4    36292018    rs1995319    T    A    3907.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.79;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=V14D;SNPEFF_CODON_CHANGE=gTt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_36291995_36292325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357504    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3907,286,0
4    37327583    rs73130327    A    C    1192.36    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=2.686;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;MQRankSum=-1.846;QD=17.8;ReadPosRankSum=-0.327;SNPEFF_AMINO_ACID_CHANGE=L59;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_37327558_37327646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1239;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309447    GT:AD:DP:GQ:PL    0/1:25,42:67:99:1222,0,644
4    37432416    rs2973217    A    C    403.44    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=24;Dels=0.0;FS=2.732;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.775;QD=16.81;ReadPosRankSum=0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1239;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309447    GT:AD:DP:GQ:PL    0/1:9,15:24:99:433,0,296
4    37445885    rs11724784    T    C    1668.41    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=114;Dels=0.0;FS=3.418;HRun=1;HaplotypeScore=0.9789;MQ=59.6;MQ0=0;MQRankSum=-0.216;QD=14.64;ReadPosRankSum=-0.591;SNPEFF_AMINO_ACID_CHANGE=L759;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_37444907_37451087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1239;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309447    GT:AD:DP:GQ:PL    0/1:51,63:114:99:1698,0,1637
4    37592674    rs937941    T    C    348.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508175    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:382,33,0
4    37636341    rs11730085    C    T    60.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.74;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512114    GT:AD:DP:GQ:PL    0/1:6,3:9:90.68:91,0,211
4    37636750    rs2276943    T    G    241.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.265;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=13.4;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314117    GT:AD:DP:GQ:PL    0/1:9,9:18:99:271,0,303
4    37831850    rs2911907    C    T    262.27    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.254;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=20.17;ReadPosRankSum=0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:3,10:13:88.13:292,0,88
4    37836302    rs3752683    T    C    896.24    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=75;Dels=0.0;FS=4.708;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.446;QD=11.95;ReadPosRankSum=0.582;SNPEFF_AMINO_ACID_CHANGE=S104;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_37836240_37836346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:42,33:75:99:926,0,1269
4    37841430    rs2261414    C    T    519.33    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.085;DB;DP=29;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.996;QD=17.91;ReadPosRankSum=1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:12,17:29:99:549,0,395
4    37841942    rs2714559    T    C    369.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.161;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=0.664;QD=12.31;ReadPosRankSum=-1.949;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:15,15:30:99:399,0,513
4    37848530    rs6814767    T    G    835.43    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.018;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=58.55;MQ0=0;MQRankSum=2.113;QD=17.4;ReadPosRankSum=0.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:17,31:48:99:865,0,537
4    37850312    rs35704131    TG    T    427.61    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=3.813;DB;DP=36;FS=0.0;HRun=1;HaplotypeScore=83.955;IndelType=D;MQ=60.9;MQ0=0;MQRankSum=1.12;QD=11.88;ReadPosRankSum=-0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505986    GT:AD:DP:GQ:PL    0/1:22,14:36:99:467,0,948
4    37850401    rs6531579    T    C    142.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;MQRankSum=-0.143;QD=12.93;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505986    GT:AD:DP:GQ:PL    0/1:6,5:11:99:172,0,219
4    37857106    rs6531590    G    A    133.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=19.06;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:2,5:7:64.59:163,0,65
4    37857166    rs6842360    A    G    301.05    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=11;Dels=0.0;FS=4.616;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=27.37;ReadPosRankSum=0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:2,9:11:14.67:331,0,15
4    37863013    rs28402184    C    T    727.33    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.22;MQ0=0;MQRankSum=0.87;QD=14.84;ReadPosRankSum=-1.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:24,25:49:99:757,0,847
4    37863045    rs3832307    AT    A    926.84    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=6.626;DB;DP=66;FS=0.0;HRun=2;HaplotypeScore=250.0709;IndelType=D;MQ=60.49;MQ0=0;MQRankSum=-1.681;QD=14.04;ReadPosRankSum=1.719;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381967    GT:AD:DP:GQ:PL    0/1:36,30:66:99:966,0,1415
4    37903756    rs2279027    T    C    1425.76    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=2.74;DB;DP=113;Dels=0.0;FS=3.545;HRun=1;HaplotypeScore=1.6988;MQ=59.8;MQ0=0;MQRankSum=0.711;QD=12.62;ReadPosRankSum=-1.648;SNPEFF_AMINO_ACID_CHANGE=S14P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_37903624_37904133;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261439    GT:AD:DP:GQ:PL    0/1:57,56:113:99:1456,0,1834
4    37974102    rs74577993    C    CAA    65.83    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=49;FS=2.632;HRun=19;HaplotypeScore=445.9246;IndelType=I;MQ=50.08;MQ0=0;MQRankSum=0.717;QD=1.34;ReadPosRankSum=-2.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261439    GT:AD:DP:GQ:PL    0/1:38,5:49:60.53:105,0,61
4    37974301    rs4832974    C    T    324.53    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.628;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8305;MQ=52.21;MQ0=0;MQRankSum=-0.444;QD=14.11;ReadPosRankSum=-1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261439    GT:AD:DP:GQ:PL    0/1:8,14:23:99:355,0,191
4    38016395    rs10501    T    G    263.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=22.0;ReadPosRankSum=-2.589;SNPEFF_AMINO_ACID_CHANGE=V228G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38016130_38016594;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261439    GT:AD:DP:GQ:PL    0/1:3,9:12:86.32:294,0,86
4    38022087    rs10015663    A    G    57.31    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.591;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.296;QD=3.18;ReadPosRankSum=0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261439    GT:AD:DP:GQ:PL    0/1:13,5:18:87.30:87,0,408
4    38023279    rs61731607    G    C    238.96    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=2.158;HRun=3;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.722;QD=14.06;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=A255P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38023207_38023339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446803    GT:AD:DP:GQ:PL    0/1:8,9:17:99:269,0,248
4    38023294    rs61731610    G    A    265.26    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.059;QD=16.58;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G260S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38023207_38023339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446803    GT:AD:DP:GQ:PL    0/1:7,9:16:99:295,0,210
4    38053825    rs73810093    T    C    48.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9971;MQ=50.65;MQ0=0;MQRankSum=-1.92;QD=6.04;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509761    GT:AD:DP:GQ:PL    0/1:5,3:8:78.30:78,0,147
4    38054582    rs6823014    A    G    115.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=11.51;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509761    GT:AD:DP:GQ:PL    0/1:5,5:10:99:145,0,170
4    38097478    rs10517469    G    A    469.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.083;DB;DP=25;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=18.79;ReadPosRankSum=0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261439    GT:AD:DP:GQ:PL    0/1:10,15:25:99:500,0,322
4    38119885    rs623945    G    A    722.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.019;QD=21.9;ReadPosRankSum=-0.325;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261439    GT:AD:DP:GQ:PL    0/1:11,22:33:99:753,0,358
4    38509524    rs1388271    A    T    169.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-83C7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512517    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
4    38698924    rs36023504    C    T    650.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.056;DB;DP=46;Dels=0.0;FS=4.588;HRun=1;HaplotypeScore=4.1435;MQ=60.0;MQ0=0;MQRankSum=1.646;QD=14.14;ReadPosRankSum=1.646;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261438    GT:AD:DP:GQ:PL    0/1:23,23:46:99:680,0,696
4    38829163    rs5743818    A    C    966.31    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.438;DB;DP=76;Dels=0.0;FS=0.888;HRun=0;HaplotypeScore=2.6377;MQ=59.39;MQ0=0;MQRankSum=0.457;QD=12.71;ReadPosRankSum=-1.195;SNPEFF_AMINO_ACID_CHANGE=A644;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38828223_38831160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381950    GT:AD:DP:GQ:PL    0/1:37,39:76:99:996,0,1283
4    38829815    rs5743815    A    G    1041.73    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.863;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.539;QD=12.4;ReadPosRankSum=1.578;SNPEFF_AMINO_ACID_CHANGE=V427A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38828223_38831160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381950    GT:AD:DP:GQ:PL    0/1:48,35:84:99:1072,0,1368
4    38829832    rs3775073    T    C    1111.07    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.1;DB;DP=78;Dels=0.0;FS=0.877;HRun=1;HaplotypeScore=0.8321;MQ=59.76;MQ0=0;MQRankSum=0.515;QD=14.24;ReadPosRankSum=-0.748;SNPEFF_AMINO_ACID_CHANGE=K421;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38828223_38831160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381950    GT:AD:DP:GQ:PL    0/1:36,42:78:99:1141,0,1150
4    38830012    rs3821985    G    C    590.29    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.11;DB;DP=40;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.119;QD=14.76;ReadPosRankSum=1.062;SNPEFF_AMINO_ACID_CHANGE=T361;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38828223_38831160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381950    GT:AD:DP:GQ:PL    0/1:18,22:40:99:620,0,595
4    38830350    rs5743810    A    G    1410.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=S249P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38828223_38831160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381950    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1443,111,0
4    38869562    rs75372916    G    A    116.69    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.34;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358869    GT:AD:DP:GQ:PL    0/1:1,4:5:16.50:147,0,17
4    38879655    rs73236661    C    T    234.91    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.899;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.76;QD=11.75;ReadPosRankSum=-1.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358869    GT:AD:DP:GQ:PL    0/1:11,9:20:99:265,0,400
4    38879949    rs11096964    G    A    464.80    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.503;DB;DP=44;Dels=0.0;FS=1.232;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.186;QD=10.33;ReadPosRankSum=0.46;SNPEFF_AMINO_ACID_CHANGE=G84R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38879692_38880047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358869    GT:AD:DP:GQ:PL    0/1:27,17:44:99:495,0,871
4    38880046    rs11944159    T    C    543.91    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.942;DB;DP=55;Dels=0.0;FS=6.444;HRun=1;HaplotypeScore=1.6809;MQ=58.39;MQ0=0;MQRankSum=0.514;QD=9.89;ReadPosRankSum=-0.615;SNPEFF_AMINO_ACID_CHANGE=L116P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38879692_38880047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358869    GT:AD:DP:GQ:PL    0/1:29,26:55:99:574,0,983
4    38880136    rs11943209    A    T    236.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.225;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=1.109;QD=16.87;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    0/1:6,8:14:99:266,0,208
4    38880167    rs11938589    C    T    92.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.63;MQ0=0;MQRankSum=-0.55;QD=13.21;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    0/1:3,4:7:99:122,0,99
4    38916465    rs4563504    A    C    343.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:376,30,0
4    38916914    rs4240248    T    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    38924275    rs12509328    C    T    55.50    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.94;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    0/1:5,3:8:85.49:85,0,179
4    38924330    rs10000037    G    A    205.20    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.454;DB;DP=19;Dels=0.0;FS=4.713;HRun=0;HaplotypeScore=0.734;MQ=58.78;MQ0=0;MQRankSum=0.537;QD=10.8;ReadPosRankSum=1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    0/1:11,8:19:99:235,0,347
4    38924358    rs12498685    A    G    354.08    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.62;QD=11.8;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    0/1:16,14:30:99:384,0,459
4    38930921    rs3188469    A    G    915.36    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=4.053;DB;DP=60;Dels=0.0;FS=2.15;HRun=0;HaplotypeScore=0.9332;MQ=56.45;MQ0=0;MQRankSum=1.793;QD=15.26;ReadPosRankSum=-1.044;SNPEFF_AMINO_ACID_CHANGE=L169;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38930863_38930954;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    0/1:27,33:60:99:945,0,769
4    38932922    rs2291493    C    A    71.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512889    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
4    38933726    rs4833106    A    G    147.36    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=13.4;ReadPosRankSum=-1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512889    GT:AD:DP:GQ:PL    0/1:5,6:11:99:177,0,176
4    38933859    rs17429619    G    A    762.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.344;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=15.57;ReadPosRankSum=0.939;SNPEFF_AMINO_ACID_CHANGE=V236I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38933856_38933995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    0/1:21,28:49:99:793,0,650
4    38937372    rs2271031    T    C    1406.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;QD=28.71;SNPEFF_AMINO_ACID_CHANGE=S292;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38937339_38937411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1440,111,0
4    38944976    rs34903665    A    AT    536.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=29.7233;IndelType=I;MQ=55.35;MQ0=0;QD=41.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513966    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:579,39,0
4    38945169    rs1060582    A    G    328.93    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.266;DB;DP=32;Dels=0.0;FS=8.939;HRun=0;HaplotypeScore=0.8667;MQ=59.28;MQ0=0;MQRankSum=-0.844;QD=10.28;ReadPosRankSum=-1.458;SNPEFF_AMINO_ACID_CHANGE=A354;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38945077_38946551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355404    GT:AD:DP:GQ:PL    0/1:19,13:32:99:359,0,555
4    38990230    rs17508162    T    C    62.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=20.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381938    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:95,9,0
4    38990265    rs62294540    T    C    190.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9899;MQ=29.0;MQ0=0;QD=27.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381938    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:223,21,0
4    38990271    rs112472821    T    TACTC    525.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=73.9889;IndelType=I;MQ=29.0;MQ0=0;QD=75.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381938    GT:AD:DP:GQ:PL    1/1:1,6:7:21.07:567,21,0
4    38990334    rs3821986    C    T    1134.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=37.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381938    GT:AD:DP:GQ:PL    1/1:0,30:30:90.28:1168,90,0
4    38995310    rs11721954    A    G    476.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.858;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.156;QD=22.68;ReadPosRankSum=-0.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344606    GT:AD:DP:GQ:PL    0/1:7,14:21:99:506,0,218
4    38995374    rs10212770    T    C    2175.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.26;SNPEFF_AMINO_ACID_CHANGE=L173;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_38995355_38995618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344606    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2209,165,0
4    39000305    rs11542133    A    G    339.78    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.038;DB;DP=33;Dels=0.0;FS=1.508;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.31;QD=10.3;ReadPosRankSum=1.184;SNPEFF_AMINO_ACID_CHANGE=S105P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39000260_39000529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381938    GT:AD:DP:GQ:PL    0/1:19,14:33:99:370,0,573
4    39000569    rs73236699    C    T    275.21    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=11.97;ReadPosRankSum=1.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344606    GT:AD:DP:GQ:PL    0/1:12,11:23:99:305,0,363
4    39000642    rs6848501    G    T    114.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=16.32;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344606    GT:AD:DP:GQ:PL    0/1:3,4:7:99:144,0,100
4    39000649    rs73236700    A    G    31.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.33;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344606    GT:AD:DP:GQ:PL    0/1:4,2:6:61.97:62,0,148
4    39064126    rs2711942    G    C    1729.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5942;MQ=59.43;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1762,129,0
4    39064162    rs2711941    A    C    2755.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=35.33;SNPEFF_AMINO_ACID_CHANGE=I10L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39064060_39064655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261426    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2789,205,0
4    39077904    rs2252519    G    A    217.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
4    39109399    rs12508577    A    G    580.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:614,45,0
4    39114455    rs2163273    T    G    85.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
4    39114559    rs62310332    G    A    409.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:443,33,0
4    39114929    rs3796510    G    A    322.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:356,27,0
4    39114945    rs35969589    A    AG    201.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=3;HaplotypeScore=44.4039;IndelType=I;MQ=60.0;MQ0=0;QD=25.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:3,5:8:18.06:244,18,0
4    39116775    rs10026775    A    T    2684.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2718,199,0
4    39116911    rs3733276    T    C    1687.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=T318;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39116779_39116950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546147    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1720,138,0
4    39117103    rs3733277    G    A    944.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,28:28:75.20:977,75,0
4    39117235    rs3733278    T    A    48.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
4    39117245    rs3733279    C    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    39122577    rs3733274    A    G    470.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381930    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:504,39,0
4    39122697    rs3733275    C    T    969.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381930    GT:AD:DP:GQ:PL    1/1:0,32:32:75.24:1002,75,0
4    39128073    rs2566162    A    G    31.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
4    39128101    rs7694760    A    T    168.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261425    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
4    39181633    rs4008425    C    G    589.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    1/1:0,20:20:54.11:623,54,0
4    39181641    rs4008424    G    A    897.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:930,69,0
4    39187521    .    TG    T    641.89    PASS    AC=2;AF=1.00;AN=2;DP=26;FS=0.0;HRun=1;HaplotypeScore=155.2884;IndelType=D;MQ=57.29;MQ0=0;QD=24.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    1/1:21,5:26:76.35:684,76,0
4    39195987    rs3796524    A    G    104.93    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=11.66;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:4,5:9:99:135,0,137
4    39205365    rs1451817    C    T    1375.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=33.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509560    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1408,102,0
4    39216221    rs2167494    C    T    402.83    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=50;Dels=0.0;FS=2.775;HRun=0;HaplotypeScore=0.9997;MQ=58.13;MQ0=0;MQRankSum=0.56;QD=8.06;ReadPosRankSum=-1.019;SNPEFF_AMINO_ACID_CHANGE=C137;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39216221_39216291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:31,19:50:99:433,0,989
4    39217352    rs3733287    A    G    438.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.696;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.456;QD=14.62;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:15,15:30:99:468,0,489
4    39229771    rs11730558    G    A    703.29    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=4.546;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.228;QD=12.13;ReadPosRankSum=1.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:35,23:58:99:733,0,909
4    39233977    rs11729098    G    A    788.92    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.417;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8801;MQ=58.84;MQ0=0;MQRankSum=-0.538;QD=14.09;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:25,30:56:99:819,0,829
4    39255369    rs7696849    T    A    520.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:553,42,0
4    39257615    rs11272440    G    GCAGGAATAATTGTAGGAAATATACGTAAATGC    1273.35    PASS    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.269;DB;DP=69;FS=0.0;HRun=0;HaplotypeScore=1364.9703;IndelType=I;MQ=59.77;MQ0=0;MQRankSum=0.634;QD=18.45;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:61,6:69:99:1312,0,706
4    39259190    rs11096987    A    G    400.98    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.178;DB;DP=31;Dels=0.0;FS=1.523;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.02;QD=12.93;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:16,15:31:99:431,0,477
4    39271541    rs3733280    A    G    1214.44    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.084;DB;DP=88;Dels=0.0;FS=2.419;HRun=1;HaplotypeScore=1.9815;MQ=60.0;MQ0=0;MQRankSum=1.49;QD=13.8;ReadPosRankSum=-0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:45,43:88:99:1244,0,1451
4    39276623    rs11096989    A    AG    602.88    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.31;DB;DP=40;FS=0.0;HRun=1;HaplotypeScore=85.5054;IndelType=I;MQ=60.08;MQ0=0;MQRankSum=1.062;QD=15.07;ReadPosRankSum=-0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:23,17:40:99:642,0,740
4    39279724    rs12648082    T    C    342.27    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2566;MQ=58.95;MQ0=0;MQRankSum=0.307;QD=7.78;ReadPosRankSum=0.253;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512095    GT:AD:DP:GQ:PL    0/1:28,16:44:99:372,0,802
4    39279907    rs2276888    A    G    603.73    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=33;Dels=0.0;FS=5.11;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=18.29;ReadPosRankSum=1.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512095    GT:AD:DP:GQ:PL    0/1:15,18:33:99:634,0,515
4    39280428    rs5857667    AT    A    72.79    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;FS=0.0;HRun=8;HaplotypeScore=28.8154;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=6.07;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512095    GT:AD:DP:GQ:PL    0/1:7,5:12:99:112,0,184
4    39291812    rs6829064    G    A    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288634    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:73,0,30
4    39297200    rs2306597    G    A    308.89    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.238;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.473;QD=9.96;ReadPosRankSum=-0.516;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505077    GT:AD:DP:GQ:PL    0/1:19,12:31:99:339,0,496
4    39301605    rs2066788    G    C    395.74    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.586;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.711;QD=13.19;ReadPosRankSum=-0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504554    GT:AD:DP:GQ:PL    0/1:17,13:30:99:426,0,516
4    39302029    rs2066786    T    C    524.04    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.548;DB;DP=45;Dels=0.0;FS=3.119;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.493;QD=11.65;ReadPosRankSum=-0.188;SNPEFF_AMINO_ACID_CHANGE=P847;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39301880_39302034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349703    GT:AD:DP:GQ:PL    0/1:24,21:45:99:554,0,706
4    39308187    rs2066789    G    A    183.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.39;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502706    GT:AD:DP:GQ:PL    0/1:4,6:10:99:214,0,104
4    39314747    rs13137543    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512881    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    39318706    rs2066790    A    G    214.82    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=19.53;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418436    GT:AD:DP:GQ:PL    0/1:4,7:11:99:245,0,132
4    39322391    .    C    T    63.60    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=5.3;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504849    GT:AD:DP:GQ:PL    0/1:7,5:12:93.60:94,0,257
4    39329102    rs11096992    G    A    107.88    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.428;DB;DP=21;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.506;QD=5.14;ReadPosRankSum=-1.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503784    GT:AD:DP:GQ:PL    0/1:15,6:21:99:138,0,543
4    39343940    rs2306596    C    A    1084.92    PASS    AB=0.291;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=55;Dels=0.0;FS=6.455;HRun=0;HaplotypeScore=0.5784;MQ=59.58;MQ0=0;MQRankSum=1.751;QD=19.73;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349703    GT:AD:DP:GQ:PL    0/1:16,39:55:99:1115,0,472
4    39344237    rs6812588    C    T    171.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349703    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
4    39353122    rs4975007    C    T    434.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.45;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349703    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:467,36,0
4    39439264    rs4975015    T    C    620.55    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.414;DB;DP=39;Dels=0.0;FS=6.368;HRun=2;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.997;QD=15.91;ReadPosRankSum=0.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257408    GT:AD:DP:GQ:PL    0/1:19,20:39:99:651,0,647
4    39439719    rs4975016    C    T    139.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=17.38;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257408    GT:AD:DP:GQ:PL    0/1:3,5:8:98.98:169,0,99
4    39448542    rs7685429    C    G    682.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_AMINO_ACID_CHANGE=P732;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39447952_39449095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257408    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:715,57,0
4    39449824    rs2687967    G    A    98.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=9.83;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257408    GT:AD:DP:GQ:PL    0/1:6,4:10:99:128,0,213
4    39450229    rs4975017    C    A    905.26    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.22;DB;DP=67;Dels=0.0;FS=5.432;HRun=1;HaplotypeScore=1.6545;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=13.51;ReadPosRankSum=0.169;SNPEFF_AMINO_ACID_CHANGE=Q1020K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39449921_39453156;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257408    GT:AD:DP:GQ:PL    0/1:35,32:67:99:935,0,1091
4    39450403    rs150112169    TGA    T    151.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=30.8502;IndelType=D;MQ=58.11;MQ0=0;MQRankSum=1.098;QD=15.19;ReadPosRankSum=0.47;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257408    GT:AD:DP:GQ:PL    0/1:5,5:10:99:191,0,251
4    39456392    rs1463478    G    A    339.18    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=23;Dels=0.0;FS=14.287;HRun=5;HaplotypeScore=0.0;MQ=56.9;MQ0=0;MQRankSum=-0.154;QD=14.75;ReadPosRankSum=1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257408    GT:AD:DP:GQ:PL    0/1:11,12:23:99:369,0,382
4    39458051    rs2125313    A    G    1201.59    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.807;DB;DP=88;Dels=0.0;FS=0.833;HRun=0;HaplotypeScore=0.7887;MQ=52.47;MQ0=0;MQRankSum=-1.016;QD=13.65;ReadPosRankSum=-0.863;SNPEFF_AMINO_ACID_CHANGE=Y122;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39458026_39458158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295955    GT:AD:DP:GQ:PL    0/1:42,46:88:99:1232,0,1267
4    39459724    rs2687958    T    C    1040.72    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=4.388;DB;DP=82;Dels=0.0;FS=6.484;HRun=0;HaplotypeScore=0.0;MQ=57.33;MQ0=0;MQRankSum=0.543;QD=12.69;ReadPosRankSum=0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295955    GT:AD:DP:GQ:PL    0/1:49,33:82:99:1071,0,1565
4    39466639    rs76534325    A    G    376.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.069;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.788;QD=12.56;ReadPosRankSum=0.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424936    GT:AD:DP:GQ:PL    0/1:15,15:30:99:407,0,490
4    39469416    rs9990499    C    G    222.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.05;MQ0=0;MQRankSum=1.239;QD=18.53;ReadPosRankSum=-1.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424936    GT:AD:DP:GQ:PL    0/1:4,8:12:99:252,0,128
4    39472796    rs73137454    T    A    276.77    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.54;DB;DP=18;Dels=0.0;FS=4.102;HRun=4;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.543;QD=15.38;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261434    GT:AD:DP:GQ:PL    0/1:7,11:18:99:307,0,195
4    39472842    rs2125314    T    A    259.84    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.137;DB;DP=35;Dels=0.0;FS=1.953;HRun=0;HaplotypeScore=0.0;MQ=57.31;MQ0=0;MQRankSum=0.33;QD=7.42;ReadPosRankSum=-0.504;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261434    GT:AD:DP:GQ:PL    0/1:23,12:35:99:290,0,740
4    39472946    rs67611743    CTT    C    130.86    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=27;FS=0.0;HRun=17;HaplotypeScore=192.5849;IndelType=D;MQ=54.59;MQ0=0;MQRankSum=0.412;QD=4.67;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261434    GT:AD:DP:GQ:PL    0/1:18,6:27:58.46:170,0,58
4    39473114    rs73137456    C    T    41.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.736;QD=13.9;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261434    GT:AD:DP:GQ:PL    0/1:1,2:3:15.67:72,0,16
4    39474868    rs749915    G    A    251.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.109;QD=17.95;ReadPosRankSum=-1.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261434    GT:AD:DP:GQ:PL    0/1:6,8:14:99:281,0,192
4    39478832    rs1048140    G    A    86.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=8.61;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513731    GT:AD:DP:GQ:PL    0/1:5,5:10:99:116,0,102
4    39502056    rs2608823    G    A    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316423    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
4    39510122    rs11735116    G    T    408.88    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=22;Dels=0.0;FS=2.643;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.334;QD=18.59;ReadPosRankSum=-0.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503779    GT:AD:DP:GQ:PL    0/1:9,13:22:99:439,0,289
4    39511300    rs73137495    T    C    185.03    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8874;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=13.22;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503779    GT:AD:DP:GQ:PL    0/1:5,9:14:99:215,0,167
4    39700173    rs1055582    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261427    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    39747536    rs302931    A    G    544.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;QD=38.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261427    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:578,42,0
4    39757480    rs11389468    A    AT    464.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=21.9226;IndelType=I;MQ=60.98;MQ0=0;QD=42.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261427    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:506,33,0
4    39827804    rs71861479    GT    G    122.05    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.181;DB;DP=26;FS=0.0;HRun=16;HaplotypeScore=110.6307;IndelType=D;MQ=59.53;MQ0=0;MQRankSum=-0.236;QD=4.69;ReadPosRankSum=0.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    0/1:10,11:26:37.60:161,0,38
4    39846098    rs9306976    CAAA    C    194.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.708;DB;DP=17;FS=0.0;HRun=16;HaplotypeScore=142.6071;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=2.001;QD=11.43;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    1/1:4,6:17:16.09:236,16,0
4    39851058    rs33909953    C    CAAA    855.54    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=0.603;DB;DP=81;FS=0.0;HRun=18;HaplotypeScore=747.4765;IndelType=I;MQ=42.23;MQ0=0;MQRankSum=-1.693;QD=10.56;ReadPosRankSum=-1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    0/1:47,12:81:13.35:894,0,13
4    39851082    .    T    G    51.42    HaplotypeScoreFilter13;QDFilter2    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.91;DP=98;Dels=0.0;FS=30.896;HRun=3;HaplotypeScore=21.7271;MQ=46.74;MQ0=0;MQRankSum=-3.927;QD=0.52;ReadPosRankSum=4.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    0/1:51,47:98:81.41:81,0,1544
4    39864424    rs34556617    A    C    438.55    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.116;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.44;MQ0=0;MQRankSum=-0.539;QD=10.7;ReadPosRankSum=-0.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507020    GT:AD:DP:GQ:PL    0/1:23,18:41:99:469,0,767
4    39875739    rs7698671    T    C    285.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
4    39878937    rs11282666    A    AATCAGACATT    1355.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=81.5779;IndelType=I;MQ=46.38;MQ0=0;QD=104.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    1/1:3,3:13:33.11:1398,33,0
4    39905497    rs10010454    C    T    201.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503867    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
4    39910172    rs80262566    GA    G    555.79    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=3.478;DB;DP=75;FS=0.0;HRun=8;HaplotypeScore=230.4058;IndelType=D;MQ=59.67;MQ0=0;MQRankSum=1.335;QD=7.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508625    GT:AD:DP:GQ:PL    0/1:48,27:75:99:595,0,1052
4    39918981    rs11097008    A    G    72.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.01;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,103
4    39921942    rs28449663    A    G    672.81    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=74;Dels=0.0;FS=2.188;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.26;QD=9.09;ReadPosRankSum=0.733;SNPEFF_AMINO_ACID_CHANGE=A244;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_39921939_39922019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    0/1:50,24:74:99:703,0,1532
4    39924372    rs34087278    T    TA    341.75    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DB;DP=55;FS=0.0;HRun=16;HaplotypeScore=398.3247;IndelType=I;MQ=51.05;MQ0=0;MQRankSum=-0.671;QD=6.21;ReadPosRankSum=-2.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    0/1:31,20:55:52.53:381,0,53
4    39929853    rs149442914    TA    T    108.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=18;FS=0.0;HRun=12;HaplotypeScore=73.4386;IndelType=D;MQ=56.3;MQ0=0;MQRankSum=-0.8;QD=6.05;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    0/1:9,8:18:99:148,0,111
4    39978005    rs35426579    A    G    2161.34    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=125;Dels=0.0;FS=5.29;HRun=0;HaplotypeScore=0.9894;MQ=59.63;MQ0=0;MQRankSum=1.773;QD=17.29;ReadPosRankSum=1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303538    GT:AD:DP:GQ:PL    0/1:54,71:125:99:2191,0,1670
4    40044833    rs28550618    C    A    177.33    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=25.33;ReadPosRankSum=0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-333E13.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381811    GT:AD:DP:GQ:PL    0/1:1,6:7:21.17:207,0,21
4    40045340    rs17439810    G    C    738.89    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.399;DB;DP=46;Dels=0.0;FS=4.332;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.148;QD=16.06;ReadPosRankSum=0.444;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-333E13.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381811    GT:AD:DP:GQ:PL    0/1:22,24:46:99:769,0,686
4    40045727    rs1704151    T    G    128.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-333E13.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381811    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
4    40099297    rs793999    A    C    72.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.34;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261435    GT:AD:DP:GQ:PL    0/1:3,4:7:99:102,0,106
4    40103817    rs61748746    G    A    557.27    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.958;DB;DP=39;Dels=0.0;FS=1.261;HRun=5;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.324;QD=14.29;ReadPosRankSum=-0.324;SNPEFF_AMINO_ACID_CHANGE=E118K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40103695_40104838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261435    GT:AD:DP:GQ:PL    0/1:18,21:39:99:587,0,654
4    40121562    rs794001    G    A    1009.40    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.525;DB;DP=63;Dels=0.0;FS=7.661;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.155;QD=16.02;ReadPosRankSum=0.099;SNPEFF_AMINO_ACID_CHANGE=D531N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40121552_40123929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381804    GT:AD:DP:GQ:PL    0/1:30,33:63:99:1039,0,896
4    40123790    rs61748749    T    G    1588.06    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.077;DB;DP=138;Dels=0.0;FS=2.17;HRun=4;HaplotypeScore=2.9641;MQ=59.16;MQ0=0;MQRankSum=1.001;QD=11.51;ReadPosRankSum=-0.525;SNPEFF_AMINO_ACID_CHANGE=S1273R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40121552_40123929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381804    GT:AD:DP:GQ:PL    0/1:75,63:138:99:1618,0,2151
4    40125631    rs73229752    C    G    75.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.82;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261435    GT:AD:DP:GQ:PL    0/1:4,3:7:99:106,0,147
4    40144073    rs794002    G    A    36.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=6.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261435    GT:AD:DP:GQ:PL    0/1:4,2:6:66.72:67,0,111
4    40337523    rs56241474    C    T    951.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=I13;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40337346_40337548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310169    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:985,72,0
4    40337908    rs10022491    T    C    1675.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_AMINO_ACID_CHANGE=S43;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40337844_40337989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310169    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1709,129,0
4    40337944    rs56159866    C    T    837.79    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.762;DB;DP=52;Dels=0.0;FS=2.34;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.234;QD=16.11;ReadPosRankSum=1.385;SNPEFF_AMINO_ACID_CHANGE=V55;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40337844_40337989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310169    GT:AD:DP:GQ:PL    0/1:25,27:52:99:868,0,736
4    40339137    rs6447332    G    C    77.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.58;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310169    GT:AD:DP:GQ:PL    0/1:5,4:9:99:107,0,147
4    40355803    rs56012618    C    A    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.57;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310169    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:64,0,73
4    40355815    rs4861323    G    A    32.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.17;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310169    GT:AD:DP:GQ:PL    0/1:2,2:4:62.67:63,0,71
4    40356041    rs55633891    C    T    1574.44    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=121;Dels=0.0;FS=0.718;HRun=0;HaplotypeScore=1.4942;MQ=59.81;MQ0=0;MQRankSum=1.142;QD=13.01;ReadPosRankSum=-0.619;SNPEFF_AMINO_ACID_CHANGE=A315V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40355996_40357234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310169    GT:AD:DP:GQ:PL    0/1:59,61:121:99:1604,0,1885
4    40356422    rs10009228    A    G    904.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.121;QD=20.11;ReadPosRankSum=0.121;SNPEFF_AMINO_ACID_CHANGE=N442S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40355996_40357234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310169    GT:AD:DP:GQ:PL    0/1:18,27:45:99:935,0,532
4    40356714    rs4861327    A    T    128.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509518    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
4    40428010    rs278981    T    C    433.13    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.75;DB;DP=45;Dels=0.0;FS=2.812;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.39;QD=9.63;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=M496V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40425272_40428160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319592    GT:AD:DP:GQ:PL    0/1:24,21:45:99:463,0,642
4    40434976    rs77609536    T    A    111.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=16;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9989;MQ=58.55;MQ0=0;MQRankSum=-0.163;QD=6.95;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295971    GT:AD:DP:GQ:PL    0/1:10,6:16:99:141,0,337
4    40435004    rs4861002    G    A    201.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295971    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
4    40438576    rs2307046    A    G    3678.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=59.78;MQ0=0;QD=34.38;SNPEFF_AMINO_ACID_CHANGE=G366;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40438458_40438664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM47;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514014    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3678,274,0
4    40440215    rs2291580    T    C    2532.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=E194;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40439788_40440814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM47;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514014    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2565,196,0
4    40778146    rs2465570    C    T    1706.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=G302;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40778066_40778276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316607    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1739,132,0
4    40778162    rs2437323    T    G    1512.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.66;SNPEFF_AMINO_ACID_CHANGE=S308A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40778066_40778276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316607    GT:AD:DP:GQ:PL    1/1:0,49:51:99:1546,114,0
4    40788544    rs2953325    A    G    1711.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=52.27;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316607    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1745,138,0
4    40809389    rs13128699    A    G    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=14.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295974    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
4    40810747    rs2261167    A    G    2157.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4449;MQ=59.0;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=K650E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_40810324_40812002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381782    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2191,169,0
4    40810978    rs882733    G    A    987.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=36.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295974    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1020,78,0
4    40823765    rs2465541    A    G    102.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.01;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507831    GT:AD:DP:GQ:PL    0/1:2,4:6:60.68:132,0,61
4    40825942    rs55720665    G    A    70.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.7;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514094    GT:AD:DP:GQ:PL    0/1:3,3:6:97.73:100,0,98
4    40832175    rs2437344    G    A    172.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295974    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
4    40832184    rs2465538    C    G    101.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295974    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:134,12,0
4    40832363    rs2437343    C    T    972.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295974    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1006,78,0
4    40895132    rs6849533    T    C    222.54    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.2;MQ0=0;MQRankSum=0.38;QD=17.12;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511120    GT:AD:DP:GQ:PL    0/1:5,8:13:99:253,0,144
4    40895552    rs6447505    G    C    95.08    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.56;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295974    GT:AD:DP:GQ:PL    0/1:5,4:9:99:125,0,183
4    40937219    rs112588334    GA    G    64.73    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=30;FS=0.0;HRun=12;HaplotypeScore=162.8221;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=0.025;QD=2.16;ReadPosRankSum=2.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295974    GT:AD:DP:GQ:PL    0/1:20,9:30:99:104,0,443
4    40946750    rs4327523    A    T    187.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=13.37;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295974    GT:AD:DP:GQ:PL    0/1:7,7:14:99:217,0,246
4    41015823    rs2292234    G    A    3268.45    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=227;DS;Dels=0.0;FS=3.186;HRun=0;HaplotypeScore=6.6106;MQ=59.43;MQ0=0;MQRankSum=1.377;QD=14.4;ReadPosRankSum=-0.392;SNPEFF_AMINO_ACID_CHANGE=G203;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_41015600_41016419;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316212    GT:AD:DP:GQ:PL    0/1:113,111:227:99:3268,0,3368
4    41015899    rs4861358    C    T    4660.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DB;DP=129;Dels=0.0;FS=3.517;HRun=1;HaplotypeScore=2.2243;MQ=59.46;MQ0=0;MQRankSum=-0.185;QD=36.13;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=R178Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_41015600_41016419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316212    GT:AD:DP:GQ:PL    1/1:2,127:129:99:4660,283,0
4    41263718    rs113569656    A    AT    535.95    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.726;DB;DP=48;FS=1.223;HRun=10;HaplotypeScore=132.6857;IndelType=I;MQ=59.52;MQ0=0;MQRankSum=0.279;QD=11.17;ReadPosRankSum=-0.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514924    GT:AD:DP:GQ:PL    0/1:25,23:48:99:575,0,388
4    41265989    rs3756001    C    G    162.50    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-1.196;QD=7.74;ReadPosRankSum=-0.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504818    GT:AD:DP:GQ:PL    0/1:14,6:21:99:192,0,528
4    41265994    rs3756000    C    A    136.13    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.482;QD=7.16;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504818    GT:AD:DP:GQ:PL    0/1:13,6:19:99:166,0,470
4    41266295    rs3775256    C    T    323.34    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=20.21;ReadPosRankSum=1.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504818    GT:AD:DP:GQ:PL    0/1:6,10:16:99:353,0,184
4    41496412    rs13140756    G    A    254.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
4    41526250    rs10014221    G    A    131.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
4    41526503    rs4266323    C    T    1628.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1661,120,0
4    41615690    rs13146318    T    A    612.48    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=39;Dels=0.0;FS=1.531;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-1.761;QD=15.7;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511424    GT:AD:DP:GQ:PL    0/1:18,21:39:99:642,0,425
4    41640878    rs6836918    C    T    966.89    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.784;DB;DP=64;Dels=0.0;FS=1.173;HRun=3;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.653;QD=15.11;ReadPosRankSum=0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    0/1:31,33:64:99:997,0,1015
4    41646651    rs2304647    G    C    361.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:394,30,0
4    41646758    rs13101981    T    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
4    41649103    rs9291207    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    41652293    rs2289338    C    G    238.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:271,21,0
4    41663621    rs17528897    G    A    349.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:383,30,0
4    41668465    rs17444537    C    A    170.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
4    41673604    rs11734372    T    C    952.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=28.87;SNPEFF_AMINO_ACID_CHANGE=M112T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_41673571_41673611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537405    GT:AD:DP:GQ:PL    1/1:0,33:33:78.21:986,78,0
4    41683212    rs6816179    A    G    75.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.8;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    0/1:4,3:7:99:106,0,134
4    41687911    rs2304652    A    G    215.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.893;QD=13.48;ReadPosRankSum=-1.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    0/1:8,8:16:99:246,0,285
4    41689974    rs1371297    A    G    206.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.347;QD=10.34;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313860    GT:AD:DP:GQ:PL    0/1:12,8:20:99:237,0,428
4    41691601    rs1061597    T    C    435.44    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=11.46;ReadPosRankSum=-0.646;SNPEFF_AMINO_ACID_CHANGE=A1010;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_41691544_41691652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512820    GT:AD:DP:GQ:PL    0/1:21,17:38:99:465,0,727
4    41748217    rs17885216    G    A    555.91    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=43;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=0.6651;MQ=58.92;MQ0=0;MQRankSum=0.479;QD=12.93;ReadPosRankSum=-0.294;SNPEFF_AMINO_ACID_CHANGE=S184;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_41746099_41748339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHOX2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226382    GT:AD:DP:GQ:PL    0/1:18,22:43:99:586,0,424
4    41748511    rs2196822    T    G    38.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHOX2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226382    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:69,0,25
4    41749668    rs6811325    C    T    123.90    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.736;QD=17.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHOX2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226382    GT:AD:DP:GQ:PL    0/1:2,5:7:18.94:154,0,19
4    41945601    rs73233772    G    C    65.66    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.57;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325094    GT:AD:DP:GQ:PL    0/1:7,3:10:95.65:96,0,262
4    41984118    rs2660320    C    T    1864.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_41983713_41988476;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333141    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1898,141,0
4    41985101    rs2660332    A    G    146.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.32;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333141    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:179,15,0
4    41992677    rs2581434    C    G    194.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.73;SNPEFF_AMINO_ACID_CHANGE=P3;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_41992489_41992777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:227,18,0
4    42003671    rs1047626    A    G    1910.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=M50V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_42003633_42003797;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1944,150,0
4    42003835    rs2581453    C    G    722.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.62;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:756,57,0
4    42020142    rs2581423    A    G    1920.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.68;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=T97A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_42020128_42020187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1953,144,0
4    42020347    rs2581422    A    G    34.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
4    42022464    rs15857    C    A    1819.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=G122;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_42022433_42022532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1853,135,0
4    42024982    rs13107768    A    G    1190.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510460    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1223,93,0
4    42025049    rs3213766    A    G    394.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510460    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:428,33,0
4    42025207    rs3213767    A    G    699.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510460    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:733,60,0
4    42040947    rs12641900    C    T    751.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:785,57,0
4    42051257    rs7684837    A    G    647.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:680,51,0
4    42051608    rs4241696    T    G    518.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:552,39,0
4    42065269    rs3804190    A    G    251.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
4    42065293    rs3804191    C    T    87.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
4    42069029    rs12643893    T    C    738.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:772,60,0
4    42069331    rs11409064    C    CA    294.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=14.2843;IndelType=I;MQ=60.0;MQ0=0;QD=42.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264451    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:336,21,0
4    42400112    rs11733156    G    T    74.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=9.29;ReadPosRankSum=0.421;SNPEFF_AMINO_ACID_CHANGE=W13C;SNPEFF_CODON_CHANGE=tgG/tgT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_42399856_42400350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319234    GT:AD:DP:GQ:PL    0/1:4,4:8:99:104,0,143
4    42466641    rs12647640    C    T    229.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.263;QD=14.34;ReadPosRankSum=-1.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    0/1:8,8:16:99:259,0,273
4    42487857    rs4441793    C    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
4    42526711    rs73235594    C    A    221.40    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.643;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=10.54;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    0/1:13,8:21:99:251,0,484
4    42527036    rs3811768    T    C    36.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.11;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:66,0,31
4    42551164    rs3811769    T    C    116.08    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.72;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.174;QD=7.74;ReadPosRankSum=-0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506713    GT:AD:DP:GQ:PL    0/1:8,7:15:99:146,0,253
4    42571074    rs6845603    A    T    244.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
4    42577900    rs6839779    A    G    106.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;MQRankSum=0.365;QD=9.67;ReadPosRankSum=1.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    0/1:6,4:11:99:136,0,210
4    42580442    rs2306007    T    C    928.43    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.157;DB;DP=74;Dels=0.0;FS=2.216;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.287;QD=12.55;ReadPosRankSum=0.946;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504024    GT:AD:DP:GQ:PL    0/1:38,36:74:99:958,0,1108
4    42582047    rs6447171    A    C    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504024    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
4    42588301    rs3214048    G    A    1206.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1240,96,0
4    42592658    rs922156    T    C    337.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
4    42592935    rs3833615    C    CA    922.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.306;DB;DP=42;FS=0.0;HRun=11;HaplotypeScore=149.6711;IndelType=I;MQ=59.39;MQ0=0;MQRankSum=-0.102;QD=21.97;ReadPosRankSum=0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:8,32:42:78.57:965,79,0
4    42596461    rs77305935    TAC    T    1714.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=159.3051;IndelType=D;MQ=59.02;MQ0=0;QD=38.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:2,42:44:99:1756,123,0
4    42602606    rs6819419    A    C    1132.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1166,87,0
4    42626659    rs34866496    GA    G    374.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=14;HaplotypeScore=76.0523;IndelType=D;MQ=60.0;MQ0=0;QD=13.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510289    GT:AD:DP:GQ:PL    1/1:6,21:28:61.49:417,61,0
4    42627805    rs1460358    A    C    229.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:263,21,0
4    42627836    rs2306004    C    T    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
4    42639186    rs898500    A    G    1951.95    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.704;DB;DP=142;Dels=0.0;FS=6.284;HRun=0;HaplotypeScore=4.2846;MQ=59.68;MQ0=0;MQRankSum=-0.176;QD=13.75;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264449    GT:AD:DP:GQ:PL    0/1:67,75:142:99:1982,0,2030
4    42895423    rs57655409    C    T    1073.53    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.578;DB;DP=81;Dels=0.0;FS=3.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.51;QD=13.25;ReadPosRankSum=-0.969;SNPEFF_AMINO_ACID_CHANGE=A47V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_42895284_42895667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRXCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399770    GT:AD:DP:GQ:PL    0/1:41,40:81:99:1104,0,1182
4    42895871    rs28550293    G    A    37.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.37;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRXCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399770    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
4    42965159    rs10213360    A    C    2622.15    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.229;DB;DP=210;DS;Dels=0.0;FS=7.188;HRun=0;HaplotypeScore=3.3865;MQ=59.69;MQ0=0;MQRankSum=-0.558;QD=12.49;ReadPosRankSum=-0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRXCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399770    GT:AD:DP:GQ:PL    0/1:108,102:210:99:2652,0,3380
4    43032612    rs4861050    G    A    448.33    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.257;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.856;QD=13.59;ReadPosRankSum=-1.548;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRXCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399770    GT:AD:DP:GQ:PL    0/1:19,14:33:99:478,0,653
4    43900697    rs960226    A    C    72.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-663P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244249    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:103,0,30
4    43900842    rs4694838    G    C    176.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-663P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244249    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:209,15,0
4    43901148    rs10022054    A    G    936.33    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.973;DB;DP=82;Dels=0.0;FS=5.946;HRun=0;HaplotypeScore=2.6624;MQ=59.09;MQ0=0;MQRankSum=0.345;QD=11.42;ReadPosRankSum=-0.572;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-663P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244249    GT:AD:DP:GQ:PL    0/1:42,40:82:99:966,0,1383
4    44626641    rs60959366    A    G    697.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_AMINO_ACID_CHANGE=G219;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_44626618_44626799;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332990    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:731,54,0
4    44626846    rs6838327    G    A    513.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502794    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:547,39,0
4    44631587    rs6813809    A    G    506.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332990    GT:AD:DP:GQ:PL    1/1:0,20:20:39.13:540,39,0
4    44637736    rs1347902    T    C    164.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332990    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
4    44637851    rs2348352    C    T    746.07    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.681;DB;DP=40;Dels=0.0;FS=3.716;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=18.65;ReadPosRankSum=0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332990    GT:AD:DP:GQ:PL    0/1:17,23:40:99:776,0,596
4    44652030    rs2348353    C    T    211.79    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.225;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.42;MQ0=0;MQRankSum=0.041;QD=9.21;ReadPosRankSum=-1.266;SNPEFF_AMINO_ACID_CHANGE=A54T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_44652002_44652118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332990    GT:AD:DP:GQ:PL    0/1:12,11:23:99:242,0,318
4    44652187    rs1113098    C    G    226.06    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=13.3;ReadPosRankSum=0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332990    GT:AD:DP:GQ:PL    0/1:9,8:17:99:256,0,290
4    44684438    rs2306993    A    G    1231.77    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=71;Dels=0.0;FS=3.668;HRun=0;HaplotypeScore=1.8665;MQ=58.82;MQ0=0;MQRankSum=0.125;QD=17.35;ReadPosRankSum=0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281543    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1262,0,921
4    44684455    rs13117025    C    T    2221.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=36.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281543    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2255,166,0
4    44684507    rs9291245    C    T    780.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281543    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:814,60,0
4    44685224    rs112232487    T    TA    1110.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=200.9058;IndelType=I;MQ=49.27;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281543    GT:AD:DP:GQ:PL    1/1:2,28:29:81.71:1152,82,0
4    44685236    .    AT    A    215.47    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=0.187;DP=36;FS=3.798;HRun=11;HaplotypeScore=284.7247;IndelType=D;MQ=48.32;MQ0=0;MQRankSum=-4.594;QD=5.99;ReadPosRankSum=-0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281543    GT:AD:DP:GQ:PL    0/1:22,14:36:99:254,0,422
4    44691273    rs116191569    C    T    405.89    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DB;DP=31;Dels=0.0;FS=7.732;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.371;QD=13.09;ReadPosRankSum=-1.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281543    GT:AD:DP:GQ:PL    0/1:16,15:31:99:436,0,494
4    44691795    rs113829805    T    TA    455.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.544;DB;DP=31;FS=0.0;HRun=14;HaplotypeScore=148.0294;IndelType=I;MQ=54.9;MQ0=0;MQRankSum=-1.38;QD=14.7;ReadPosRankSum=-0.125;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513775    GT:AD:DP:GQ:PL    1/1:4,20:31:29.88:498,30,0
4    44696289    rs138908403    A    G    36.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.21;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513775    GT:AD:DP:GQ:PL    0/1:3,2:5:66.03:66,0,106
4    44696538    rs12641137    C    G    1366.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281543    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1400,99,0
4    44704938    rs77972003    T    A    141    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.14;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPDA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509756    GT:AD:DP:GQ:PL    0/1:2,5:7:62.92:171,0,63
4    44709695    rs1491302    C    T    203.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPDA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295448    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
4    46305733    rs279871    T    C    329.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514193    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:362,27,0
4    46307394    rs279870    G    A    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
4    46307431    rs35011150    T    TA    99.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=9;FS=0.0;HRun=14;HaplotypeScore=69.1976;IndelType=I;MQ=48.72;MQ0=0;MQRankSum=-0.742;QD=11.03;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514193    GT:AD:DP:GQ:PL    1/1:4,5:9:1.81:138,2,0
4    46314367    rs279859    A    G    275.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503806    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
4    46314593    rs279858    T    C    2914.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.76;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=K132;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_46314513_46314733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356504    GT:AD:DP:GQ:PL    1/1:0,96:96:99:2947,232,0
4    46334702    rs279827    A    G    1603.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356504    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1636,120,0
4    46334810    rs279828    A    C    192.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356504    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:226,18,0
4    46736853    rs11736008    A    T    73.65    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=9.21;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505102    GT:AD:DP:GQ:PL    0/1:3,5:8:99:104,0,103
4    46967279    rs2055943    C    A    697.24    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.553;DB;DP=43;Dels=0.0;FS=1.379;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.137;QD=16.21;ReadPosRankSum=1.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264318    GT:AD:DP:GQ:PL    0/1:19,24:43:99:727,0,565
4    46994972    rs35633777    G    GA    356.62    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.712;DB;DP=50;FS=0.0;HRun=12;HaplotypeScore=178.7561;IndelType=I;MQ=60.16;MQ0=0;MQRankSum=-0.51;QD=7.13;ReadPosRankSum=-1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264318    GT:AD:DP:GQ:PL    0/1:25,19:50:99:396,0,299
4    46995366    rs2229940    G    T    975.11    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.076;DB;DP=77;Dels=0.0;FS=1.888;HRun=0;HaplotypeScore=2.4447;MQ=59.7;MQ0=0;MQRankSum=-0.684;QD=12.66;ReadPosRankSum=0.504;SNPEFF_AMINO_ACID_CHANGE=L26M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_46995356_46996424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264318    GT:AD:DP:GQ:PL    0/1:40,37:77:99:1005,0,1150
4    47033770    rs72416056    TCG    T    2399.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=225.6572;IndelType=D;MQ=62.18;MQ0=1;QD=39.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295454    GT:AD:DP:GQ:PL    1/1:2,59:60:99:2442,169,0
4    47034075    rs45460902    G    A    900.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.1251;MQ=47.12;MQ0=0;QD=16.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295454    GT:AD:DP:GQ:PL    1/1:0,48:56:72.22:934,72,0
4    47034103    rs67779259    AG    A    986.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=1;HaplotypeScore=567.222;IndelType=D;MQ=35.31;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295454    GT:AD:DP:GQ:PL    1/1:26,8:34:99:1029,101,0
4    47034136    rs77472678    A    C    90.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.377;MQ=35.14;MQ0=0;QD=12.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295454    GT:AD:DP:GQ:PL    1/1:0,7:7:12.02:123,12,0
4    47034626    rs41309288    C    G    495.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7673;MQ=58.55;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295454    GT:AD:DP:GQ:PL    1/1:1,15:16:42.11:528,42,0
4    47163087    rs988944    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295454    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    47163630    rs10016388    A    T    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513567    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
4    47322190    rs4482737    T    C    2146.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47322144_47322226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538619    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2179,157,0
4    47322219    rs6284    C    A    556.38    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=3.753;DB;DP=51;Dels=0.0;FS=1.269;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=10.91;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=I109;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47322144_47322226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538619    GT:AD:DP:GQ:PL    0/1:29,21:51:99:586,0,894
4    47408665    rs6287    A    G    494.35    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.273;DB;DP=45;Dels=0.0;FS=1.786;HRun=0;HaplotypeScore=0.0;MQ=57.98;MQ0=0;MQRankSum=-0.694;QD=10.99;ReadPosRankSum=0.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510909    GT:AD:DP:GQ:PL    0/1:21,24:45:99:524,0,631
4    47427533    rs79824064    A    C    39.84    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9975;MQ=57.89;MQ0=0;MQRankSum=-0.762;QD=4.43;ReadPosRankSum=-1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295454    GT:AD:DP:GQ:PL    0/1:7,2:9:69.84:70,0,70
4    47514685    rs33995001    C    T    587.23    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=58;Dels=0.0;FS=2.274;HRun=0;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;MQRankSum=-0.766;QD=10.12;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=T43I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47514521_47514847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    0/1:34,24:58:99:617,0,1116
4    47514967    rs35634995    A    C    138.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.103;QD=13.84;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507889    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,161
4    47524961    rs12509973    T    A    93.61    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=8.51;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    0/1:6,5:11:99:124,0,212
4    47525009    rs63112060    T    A    678.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    1/1:0,30:30:63.17:711,63,0
4    47538044    rs35012290    G    A    525.32    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=50;Dels=0.0;FS=2.528;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.596;QD=10.51;ReadPosRankSum=-0.293;SNPEFF_AMINO_ACID_CHANGE=A337T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47537919_47538050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    0/1:32,18:50:99:555,0,921
4    47538360    rs13152689    T    C    742.91    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.901;DB;DP=47;Dels=0.0;FS=3.108;HRun=0;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;MQRankSum=-0.33;QD=15.81;ReadPosRankSum=1.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    0/1:24,23:47:99:773,0,786
4    47560163    rs11729411    C    A    1353.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=42;Dels=0.0;FS=3.575;HRun=0;HaplotypeScore=1.8666;MQ=59.0;MQ0=0;MQRankSum=-1.31;QD=32.23;ReadPosRankSum=-1.31;SNPEFF_AMINO_ACID_CHANGE=I769;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47559681_47560290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    1/1:1,41:42:68.71:1387,69,0
4    47560878    rs191877898    A    T    642.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=70;Dels=0.0;FS=8.513;HRun=4;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=9.18;ReadPosRankSum=0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    0/1:42,28:70:99:672,0,1392
4    47562802    rs34470690    G    GC    228.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=21.1095;IndelType=I;MQ=56.04;MQ0=0;QD=38.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:270,18,0
4    47582350    .    G    T    78.74    HaplotypeScoreFilter13;QDFilter2    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.455;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=14.9966;MQ=53.7;MQ0=0;MQRankSum=-0.948;QD=1.38;ReadPosRankSum=0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    0/1:31,26:57:99:109,0,394
4    47582359    .    C    T    106.28    HaplotypeScoreFilter13;QDFilter2    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.04;DP=59;Dels=0.0;FS=5.927;HRun=4;HaplotypeScore=22.0232;MQ=53.92;MQ0=0;MQRankSum=-1.916;QD=1.8;ReadPosRankSum=0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273859    GT:AD:DP:GQ:PL    0/1:33,26:59:99:136,0,465
4    47667064    rs11934749    T    C    261.77    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.134;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.427;QD=9.7;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=H386R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47667049_47667280;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508498    GT:AD:DP:GQ:PL    0/1:17,10:27:99:292,0,553
4    47839929    rs2289433    C    T    2224.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=C13Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47839904_47839966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273857    GT:AD:DP:GQ:PL    1/1:1,69:71:99:2257,175,0
4    47853843    rs6822668    T    C    1427.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381538    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1461,108,0
4    47857040    rs7690499    T    C    497.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.677;DB;DP=32;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.283;QD=15.55;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381538    GT:AD:DP:GQ:PL    0/1:16,16:32:99:528,0,532
4    47878949    rs56686194    A    G    69.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.62;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,108
4    47878979    .    C    CAAAT    406.70    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DP=11;FS=0.0;HRun=0;HaplotypeScore=47.9009;IndelType=I;MQ=57.44;MQ0=0;MQRankSum=-0.365;QD=36.97;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:5,6:11:99:446,0,191
4    47880494    rs2289435    G    A    1517.29    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=3.702;DB;DP=85;Dels=0.0;FS=5.402;HRun=0;HaplotypeScore=0.734;MQ=58.91;MQ0=0;MQRankSum=-0.032;QD=17.85;ReadPosRankSum=-0.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:33,52:85:99:1547,0,851
4    47880987    rs59766953    G    A    107.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=10.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:6,4:10:99:138,0,221
4    47881191    rs9997555    C    T    224.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.604;QD=10.71;ReadPosRankSum=-1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:12,9:21:99:255,0,399
4    47886319    rs12510002    A    C    455.51    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.42;DB;DP=41;Dels=0.0;FS=3.899;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.203;QD=11.11;ReadPosRankSum=-0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:21,20:41:99:486,0,648
4    47887536    rs2053404    T    C    1985.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=A601;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47887515_47887674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2019,150,0
4    47887991    rs6818556    G    A    3791.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.978;MQ=59.84;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=T523;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47887896_47888016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3791,271,0
4    47888137    rs11940441    T    A    67.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=11.21;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:3,3:6:97.25:97,0,105
4    47898491    rs6447592    C    T    1052.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    1/1:0,32:32:78.26:1085,78,0
4    47900186    rs145577149    CAAAT    C    473.32    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=87.513;IndelType=D;MQ=54.24;MQ0=0;MQRankSum=-1.021;QD=24.91;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:9,10:19:99:512,0,672
4    47901259    rs4475122    G    A    62.75    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=5.7;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:6,5:11:92.74:93,0,208
4    47901476    rs12651301    G    A    577.62    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.322;DB;DP=42;Dels=0.0;FS=1.227;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=13.75;ReadPosRankSum=-2.053;SNPEFF_AMINO_ACID_CHANGE=P246L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47901387_47901565;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:22,20:42:99:608,0,660
4    47905158    rs2119204    A    G    556.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    1/1:0,20:20:48.13:590,48,0
4    47913127    rs4695306    C    T    122.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
4    47913156    rs66901846    T    G    35.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.92;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NFXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329043    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:66,0,32
4    47938879    rs17573673    G    A    1455.48    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=2.376;DB;DP=89;Dels=0.0;FS=7.055;HRun=2;HaplotypeScore=0.9999;MQ=59.22;MQ0=0;MQRankSum=-0.51;QD=16.35;ReadPosRankSum=0.644;SNPEFF_AMINO_ACID_CHANGE=F544;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47937996_47939846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358519    GT:AD:DP:GQ:PL    0/1:41,48:89:99:1485,0,1211
4    47944029    rs11387704    CA    C    107.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=18;HaplotypeScore=105.8087;IndelType=D;MQ=57.15;MQ0=0;QD=6.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504722    GT:AD:DP:GQ:PL    1/1:3,12:17:29.44:149,29,0
4    47945295    rs28642966    C    T    562.10    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.167;DB;DP=40;Dels=0.0;FS=2.795;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.313;QD=14.05;ReadPosRankSum=-0.748;SNPEFF_AMINO_ACID_CHANGE=D118N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_47945198_47945305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358519    GT:AD:DP:GQ:PL    0/1:18,22:40:99:592,0,578
4    47945455    rs6819506    C    G    421.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358519    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:455,33,0
4    47951945    rs1972883    G    A    1352.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=59.42;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358519    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1386,99,0
4    47953515    rs3845160    A    T    1510.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358519    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1543,111,0
4    48034884    rs56001502    C    T    116.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.43;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NIPAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295461    GT:AD:DP:GQ:PL    0/1:2,4:6:64.18:147,0,64
4    48036711    rs10517204    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NIPAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295461    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    48038379    rs10805163    C    T    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NIPAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508180    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
4    48073501    rs906486    G    T    2393.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264316    GT:AD:DP:GQ:PL    1/1:0,69:70:99:2427,178,0
4    48073937    rs6447615    T    C    42.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264316    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:72,0,23
4    48076248    rs2279965    A    G    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264316    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:71,0,32
4    48078593    rs6850108    C    A    765.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264316    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:799,60,0
4    48081896    rs35540441    CA    C    501.63    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=4.624;DB;DP=57;FS=1.661;HRun=11;HaplotypeScore=169.9364;IndelType=D;MQ=58.97;MQ0=0;MQRankSum=0.719;QD=8.8;ReadPosRankSum=1.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264316    GT:AD:DP:GQ:PL    0/1:26,28:57:99:541,0,561
4    48082208    rs2352590    T    C    240.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264316    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:273,21,0
4    48088419    rs6833403    C    T    509.31    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.283;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=12.73;ReadPosRankSum=-0.547;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510457    GT:AD:DP:GQ:PL    0/1:23,17:40:99:539,0,795
4    48088446    rs6858664    A    G    1717.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.55;MQ0=0;QD=33.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510457    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1750,144,0
4    48139565    rs2661529    C    A    435.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511150    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:469,36,0
4    48147612    rs2661547    T    G    1420.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1454,111,0
4    48147774    rs2661548    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
4    48151452    rs1507919    A    T    374.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:407,36,0
4    48158524    rs882715    G    A    206.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
4    48165834    rs13104849    T    C    148.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9933;MQ=40.36;MQ0=0;QD=21.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:181,15,0
4    48169616    rs3805179    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
4    48169769    rs7689953    A    G    1621.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1655,120,0
4    48170669    rs2243840    A    G    1169.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1202,87,0
4    48172218    rs2271174    C    T    2512.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.68;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2546,184,0
4    48172266    rs2271173    G    A    2630.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=35.08;SNPEFF_AMINO_ACID_CHANGE=S151;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_48172265_48172393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2664,208,0
4    48172510    rs2256425    G    A    303.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=27.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:336,27,0
4    48173547    rs7669393    A    G    563.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:596,45,0
4    48177954    rs7696271    A    G    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.95;MQ0=0;QD=15.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:108,9,0
4    48178003    rs11282767    A    AAATCAGCC    1740.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=145.1544;IndelType=I;MQ=41.49;MQ0=0;QD=96.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:6,11:18:45.15:1783,45,0
4    48178064    rs45598338    C    A    1176.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=54.84;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381501    GT:AD:DP:GQ:PL    1/1:0,36:36:96.30:1209,96,0
4    48372085    rs1466631    T    G    636.15    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=1.71;QD=16.31;ReadPosRankSum=0.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264313    GT:AD:DP:GQ:PL    0/1:19,20:39:99:666,0,631
4    48380208    rs2291476    G    A    393.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.029;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.645;QD=16.39;ReadPosRankSum=2.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264313    GT:AD:DP:GQ:PL    0/1:12,12:24:99:423,0,415
4    48384499    rs6816010    T    C    761.33    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=68;Dels=0.0;FS=3.483;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.41;QD=11.2;ReadPosRankSum=-1.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506375    GT:AD:DP:GQ:PL    0/1:37,31:68:99:791,0,1258
4    48486193    rs6845250    C    G    58.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=3.01;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.248;QD=6.5;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273861    GT:AD:DP:GQ:PL    0/1:6,3:9:88.48:88,0,200
4    48487297    rs7676578    T    A    49.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.7323;MQ=56.62;MQ0=0;MQRankSum=-0.988;QD=7.04;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273861    GT:AD:DP:GQ:PL    0/1:3,3:7:79.26:79,0,104
4    48491010    rs3811759    A    G    218.87    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.627;QD=14.59;ReadPosRankSum=0.193;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327939    GT:AD:DP:GQ:PL    0/1:7,8:15:99:249,0,205
4    48492434    rs10008444    G    C    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.52;SNPEFF_AMINO_ACID_CHANGE=Q42H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_48492269_48493271;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327939    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
4    48494708    rs35912975    A    T    852.20    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.495;DB;DP=50;Dels=0.0;FS=6.472;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.534;QD=17.04;ReadPosRankSum=1.078;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    0/1:24,26:50:99:882,0,760
4    48496368    rs17472127    A    G    274.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=22;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.657;QD=12.46;ReadPosRankSum=-0.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    0/1:11,11:22:99:304,0,394
4    48516970    rs7434721    C    T    542.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:575,42,0
4    48517352    rs7661515    C    A    317.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:350,27,0
4    48529683    rs66983297    TA    T    736.14    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=0.607;DB;DP=120;FS=0.0;HRun=15;HaplotypeScore=874.8854;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=1.399;QD=6.13;ReadPosRankSum=0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512297    GT:AD:DP:GQ:PL    0/1:50,59:120:30.85:775,0,31
4    48529733    rs4695385    G    A    1216.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.64;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512297    GT:AD:DP:GQ:PL    1/1:0,42:42:96.31:1249,96,0
4    48543007    rs76637950    A    G    674.54    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.08;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.632;QD=14.35;ReadPosRankSum=-1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    0/1:20,27:47:99:705,0,622
4    48546153    rs7683398    T    C    168.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502925    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
4    48547041    rs952289    A    C    886.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502925    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:920,69,0
4    48559517    .    G    T    131    QDFilter2    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.788;DP=100;Dels=0.0;FS=55.451;HRun=2;HaplotypeScore=6.5341;MQ=53.38;MQ0=0;MQRankSum=-1.689;QD=1.31;ReadPosRankSum=1.689;SNPEFF_AMINO_ACID_CHANGE=Q1360K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_48559470_48559729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358350    GT:AD:DP:GQ:PL    0/1:52,48:100:99:161,0,1589
4    48565101    rs13138269    A    T    560.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:594,45,0
4    48577121    rs28558226    C    T    2045.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2078,150,0
4    48582836    rs4695390    A    T    1752.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.66;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1786,132,0
4    48584405    rs3107023    T    C    445.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:478,36,0
4    48588742    rs34558821    C    T    1179.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=G254;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_48588638_48588745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506685    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1213,93,0
4    48592060    rs6447648    G    T    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
4    48607938    rs2940319    T    C    695.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:728,54,0
4    48611149    rs2354348    A    G    967.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:1000,75,0
4    48611153    rs776603    A    T    854.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,24:25:66.22:887,66,0
4    48621022    rs1702799    G    A    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505759    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
4    48625213    rs776579    C    A    302.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.8667;MQ=58.05;MQ0=0;QD=25.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:335,27,0
4    48655635    rs776580    T    A    594.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=56.92;MQ0=0;QD=25.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:628,51,0
4    48655824    rs67820516    AAGCAGC    A    1228.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=280.893;IndelType=D;MQ=53.72;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264319    GT:AD:DP:GQ:PL    1/1:17,24:41:66.22:1271,66,0
4    48851937    rs3761729    C    T    1885.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCIAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507546    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1918,138,0
4    48887329    .    A    AAAAC    1371.07    PASS    AC=2;AF=1.00;AN=2;DP=19;FS=0.0;HRun=0;HaplotypeScore=59.0573;IndelType=I;MQ=47.8;MQ0=0;QD=72.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCIAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273860    GT:AD:DP:GQ:PL    1/1:1,16:19:57.19:1413,57,0
4    48996899    rs147719750    C    T    328.16    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.366;DB;DP=27;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.952;QD=12.15;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWH43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226432    GT:AD:DP:GQ:PL    0/1:15,12:27:99:358,0,521
4    49005816    rs147362118    C    G    914.05    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=77;Dels=0.0;FS=8.204;HRun=0;HaplotypeScore=0.9996;MQ=59.1;MQ0=0;MQRankSum=1.318;QD=11.87;ReadPosRankSum=-0.927;SNPEFF_AMINO_ACID_CHANGE=V262;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_49005752_49006009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWH43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513409    GT:AD:DP:GQ:PL    0/1:42,35:77:99:944,0,1226
4    49199105    .    T    C    156.40    MQFilter40    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.66;MQ0=2;MQRankSum=1.059;QD=8.23;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC118282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408488    GT:AD:DP:GQ:PL    0/1:10,9:19:99:186,0,164
4    49490753    rs12161106    G    T    208.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.13;MQ0=1;QD=29.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399720    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:241,18,0
4    49504957    rs7667047    C    G    137.88    MQFilter40;QDFilter2    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=0.018;DB;DP=80;Dels=0.0;FS=4.251;HRun=0;HaplotypeScore=0.0;MQ=32.23;MQ0=22;MQRankSum=-3.072;QD=1.72;ReadPosRankSum=-1.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514077    GT:AD:DP:GQ:PL    0/1:53,27:80:99:168,0,1289
4    49505075    .    T    C    990.29    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=5.403;DP=164;Dels=0.0;FS=1.743;HRun=1;HaplotypeScore=0.0;MQ=33.6;MQ0=15;MQRankSum=-2.025;QD=6.04;ReadPosRankSum=1.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514077    GT:AD:DP:GQ:PL    0/1:105,59:164:99:1020,0,2276
4    49505109    rs111619404    C    T    1019.43    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.166;DB;DP=177;Dels=0.0;FS=5.296;HRun=3;HaplotypeScore=2.4694;MQ=34.14;MQ0=9;MQRankSum=-0.909;QD=5.76;ReadPosRankSum=-1.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514077    GT:AD:DP:GQ:PL    0/1:108,69:177:99:1049,0,2193
4    49505152    rs113706214    G    C    757.21    MQFilter40    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=117;Dels=0.0;FS=2.548;HRun=0;HaplotypeScore=3.3881;MQ=33.53;MQ0=8;MQRankSum=-2.051;QD=6.47;ReadPosRankSum=0.807;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514077    GT:AD:DP:GQ:PL    0/1:72,44:117:99:787,0,1623
4    49505182    .    T    A    248.28    MQFilter40    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.936;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.1;MQ0=6;MQRankSum=-1.81;QD=3.71;ReadPosRankSum=2.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514077    GT:AD:DP:GQ:PL    0/1:49,18:67:99:278,0,1312
4    49561374    rs3894815    C    T    111.49    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.28;MQ0=0;MQRankSum=-2.637;QD=9.29;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:4,8:12:99:141,0,128
4    49561407    rs76485495    A    G    124.29    MQFilter40;SnpCluster    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.247;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=39.52;MQ0=0;MQRankSum=-3.2;QD=7.77;ReadPosRankSum=1.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:6,10:16:99:154,0,160
4    49561408    rs75696021    T    C    124.29    MQFilter40;SnpCluster    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.52;MQ0=0;MQRankSum=-3.2;QD=7.77;ReadPosRankSum=1.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:6,10:16:99:154,0,165
4    49561416    rs7439548    G    C    193.05    MQFilter40;SnpCluster    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=20;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.0;MQ=38.41;MQ0=1;MQRankSum=-3.507;QD=9.65;ReadPosRankSum=-0.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:7,13:20:99:223,0,162
4    49561459    rs76892624    C    T    350.10    MQFilter40    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=35.99;MQ0=1;MQRankSum=-2.937;QD=12.5;ReadPosRankSum=1.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:10,18:28:99:380,0,258
4    49561466    rs79244803    C    G    332.43    MQFilter40    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.123;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.44;MQ0=1;MQRankSum=-3.183;QD=11.87;ReadPosRankSum=2.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:11,17:28:99:362,0,268
4    49561470    rs74533848    C    T    350.56    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.78;MQ0=1;MQRankSum=-2.91;QD=12.98;ReadPosRankSum=2.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:9,18:27:99:381,0,221
4    49561505    rs7434652    T    A    388.46    MQFilter40    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=30;Dels=0.0;FS=1.822;HRun=0;HaplotypeScore=0.0;MQ=31.03;MQ0=1;MQRankSum=-2.708;QD=12.95;ReadPosRankSum=-0.805;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:8,22:30:99:418,0,202
4    49561514    rs76817377    T    A    434.14    MQFilter40    AB=0.281;AC=1;AF=0.50;AN=2;BaseQRankSum=0.964;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=30.33;MQ0=0;MQRankSum=-2.473;QD=13.57;ReadPosRankSum=-1.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:9,23:32:99:464,0,223
4    49561565    .    C    T    191.82    MQFilter40;SnpCluster    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.52;MQ0=0;MQRankSum=-2.11;QD=8.34;ReadPosRankSum=-0.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:9,14:23:99:222,0,213
4    49561569    .    A    G    165.20    MQFilter40;SnpCluster    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.236;DP=23;Dels=0.0;FS=2.276;HRun=1;HaplotypeScore=0.0;MQ=26.7;MQ0=0;MQRankSum=-2.11;QD=7.18;ReadPosRankSum=-0.409;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:9,14:23:99:195,0,215
4    49561572    rs77607216    A    G    198.32    MQFilter40;SnpCluster    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.23;MQ0=0;MQRankSum=-1.33;QD=7.93;ReadPosRankSum=-0.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:9,16:25:99:228,0,216
4    49561616    rs77525346    G    C    364.46    HaplotypeScoreFilter13;MQFilter40    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=1.41;DB;DP=22;Dels=0.0;FS=6.166;HRun=2;HaplotypeScore=23.1962;MQ=32.21;MQ0=0;MQRankSum=-0.141;QD=16.57;ReadPosRankSum=0.987;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:7,15:22:99:394,0,137
4    49561622    rs149855727    CCT    C    428.88    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.637;DB;DP=17;FS=18.543;HRun=0;HaplotypeScore=130.7184;IndelType=D;MQ=34.51;MQ0=0;MQRankSum=-2.122;QD=23.83;ReadPosRankSum=-0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-241F15.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513357    GT:AD:DP:GQ:PL    0/1:6,12:17:99:468,0,172
4    49601421    rs12163707    A    T    87.81    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.15;MQ0=0;MQRankSum=-0.811;QD=6.75;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC119751.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411167    GT:AD:DP:GQ:PL    0/1:7,6:13:99:118,0,182
4    49601570    rs12163674    C    T    248.56    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=34;Dels=0.0;FS=1.537;HRun=0;HaplotypeScore=1.5661;MQ=45.28;MQ0=0;MQRankSum=-1.595;QD=7.31;ReadPosRankSum=0.142;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC119751.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408148    GT:AD:DP:GQ:PL    0/1:21,13:34:99:279,0,479
4    52744145    rs3215145    T    TAGAC    1538.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=102.6527;IndelType=I;MQ=48.36;MQ0=0;QD=69.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCUN1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504661    GT:AD:DP:GQ:PL    1/1:6,16:22:63.21:1580,63,0
4    52752812    rs2271046    A    T    980.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCUN1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334635    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:1013,75,0
4    52928352    rs113969022    GT    G    88.23    QDFilter2    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=0.235;DB;DP=76;FS=0.0;HRun=18;HaplotypeScore=568.3819;IndelType=D;MQ=48.64;MQ0=0;MQRankSum=0.313;QD=1.16;ReadPosRankSum=1.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295213    GT:AD:DP:GQ:PL    0/1:26,28:76:52.48:127,0,52
4    52938243    rs3860707    T    C    1379.03    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=92;Dels=0.0;FS=4.158;HRun=2;HaplotypeScore=2.9397;MQ=60.0;MQ0=0;MQRankSum=-0.661;QD=14.99;ReadPosRankSum=-1.597;SNPEFF_AMINO_ACID_CHANGE=S195P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_52938083_52938322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419395    GT:AD:DP:GQ:PL    0/1:48,43:92:99:1409,0,1368
4    52945207    rs12641673    G    A    68.08    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=7.56;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514670    GT:AD:DP:GQ:PL    0/1:5,4:9:98.08:98,0,159
4    52945799    rs7689145    C    T    940.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6498;MQ=59.14;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514670    GT:AD:DP:GQ:PL    1/1:0,27:27:78.21:973,78,0
4    52946161    rs7657148    A    G    530.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510549    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:564,45,0
4    52951213    rs10556262    CTT    C    222.17    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.182;DB;DP=27;FS=0.0;HRun=14;HaplotypeScore=157.6526;IndelType=D;MQ=58.68;MQ0=0;MQRankSum=0.19;QD=8.23;ReadPosRankSum=0.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511028    GT:AD:DP:GQ:PL    0/1:5,11:27:81.47:261,0,81
4    52960908    rs3214049    T    A    254.59    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.271;QD=25.46;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295213    GT:AD:DP:GQ:PL    0/1:2,8:10:52.33:285,0,52
4    53476754    rs61748750    G    A    691.58    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=61;Dels=0.0;FS=1.077;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.758;QD=11.34;ReadPosRankSum=0.913;SNPEFF_AMINO_ACID_CHANGE=D170;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_53476707_53476783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP46;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451218    GT:AD:DP:GQ:PL    0/1:36,25:61:99:722,0,1124
4    53773371    rs2930103    A    C    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388940    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
4    54011424    rs4864727    C    T    1145.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388940    GT:AD:DP:GQ:PL    1/1:0,37:37:87.29:1179,87,0
4    54218736    rs75757991    G    A    324.89    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.908;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.306;QD=11.2;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503450    GT:AD:DP:GQ:PL    0/1:17,12:29:99:355,0,476
4    54232110    rs1351514    G    A    462.55    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=26;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.083;QD=17.79;ReadPosRankSum=-1.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503450    GT:AD:DP:GQ:PL    0/1:8,18:26:99:493,0,262
4    54245476    rs75361204    A    T    1979.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306932    GT:AD:DP:GQ:PL    1/1:0,56:57:99:2013,147,0
4    54250189    rs10012853    T    G    227.42    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=12.63;ReadPosRankSum=-1.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306932    GT:AD:DP:GQ:PL    0/1:8,10:18:99:257,0,280
4    54257034    rs6847795    A    T    235.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510668    GT:AD:DP:GQ:PL    1/1:0,8:8:24.03:269,24,0
4    54257131    rs10517296    A    T    279.86    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.988;DB;DP=37;Dels=0.0;FS=2.153;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=7.56;ReadPosRankSum=-2.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510668    GT:AD:DP:GQ:PL    0/1:24,13:37:99:310,0,794
4    54310058    rs28459503    C    A    60.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513975    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:93,9,0
4    54310188    rs11722866    A    G    293.67    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.434;DB;DP=28;Dels=0.0;FS=2.049;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.659;QD=10.49;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513975    GT:AD:DP:GQ:PL    0/1:17,11:28:99:324,0,483
4    54310281    rs11723755    T    G    590.16    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=35;Dels=0.0;FS=3.368;HRun=0;HaplotypeScore=1.7313;MQ=60.0;MQ0=0;MQRankSum=0.944;QD=16.86;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513975    GT:AD:DP:GQ:PL    0/1:16,19:35:99:620,0,467
4    54310340    rs112220672    TA    T    278.28    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=19;FS=0.0;HRun=5;HaplotypeScore=72.6687;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=14.65;ReadPosRankSum=0.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513975    GT:AD:DP:GQ:PL    0/1:8,11:19:99:317,0,271
4    54319011    rs6850629    C    A    660.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306932    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:694,51,0
4    54327235    rs3811785    T    C    483.81    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.143;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=57.73;MQ0=0;MQRankSum=-0.26;QD=15.61;ReadPosRankSum=0.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306932    GT:AD:DP:GQ:PL    0/1:13,18:31:99:514,0,375
4    54327584    rs3765158    A    G    979.17    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=56;Dels=0.0;FS=1.071;HRun=1;HaplotypeScore=2.4551;MQ=59.17;MQ0=0;MQRankSum=1.032;QD=17.49;ReadPosRankSum=1.183;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306932    GT:AD:DP:GQ:PL    0/1:22,34:56:99:1009,0,613
4    54362150    rs6836800    G    A    442.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.008;DB;DP=34;Dels=0.0;FS=1.901;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.63;QD=13.0;ReadPosRankSum=1.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511398    GT:AD:DP:GQ:PL    0/1:17,17:34:99:472,0,444
4    54362676    rs2271559    A    G    34.95    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.922;QD=4.99;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511398    GT:AD:DP:GQ:PL    0/1:5,2:7:64.94:65,0,123
4    54441842    rs28392904    C    G    551.80    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.814;DB;DP=35;Dels=0.0;FS=1.798;HRun=0;HaplotypeScore=0.9998;MQ=59.34;MQ0=0;MQRankSum=0.439;QD=15.77;ReadPosRankSum=-1.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    0/1:11,24:35:99:582,0,297
4    54852693    rs149656971    CTTTTA    C    263.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=64.357;IndelType=D;MQ=54.46;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:6,5:11:18.06:305,18,0
4    54967214    rs6554148    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    55136981    .    C    G    520.22    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.805;DP=37;Dels=0.0;FS=1.926;HRun=2;HaplotypeScore=1.9025;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=14.06;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    0/1:17,19:37:99:550,0,478
4    55138648    rs139236922    T    C    548.63    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.294;DB;DP=35;Dels=0.0;FS=1.311;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.512;QD=15.68;ReadPosRankSum=-1.997;SNPEFF_AMINO_ACID_CHANGE=L442P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_55138561_55138687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257290    GT:AD:DP:GQ:PL    0/1:17,18:35:99:579,0,572
4    55139978    rs1492765    T    C    403.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:436,33,0
4    55140016    rs869978    T    C    206.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:239,21,0
4    55140031    rs1492766    T    G    176.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
4    55141055    rs1873778    A    G    2133.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.68;MQ0=0;QD=30.04;SNPEFF_AMINO_ACID_CHANGE=P567;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_55141008_55141140;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257290    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2166,169,0
4    55144447    rs1907820    T    C    723.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=52.06;MQ0=0;QD=23.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461294    GT:AD:DP:GQ:PL    1/1:0,31:31:57.17:756,57,0
4    55146406    rs6148442    T    TTGTAGGTCCCCCAG    1996.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=83.273;IndelType=I;MQ=33.91;MQ0=0;QD=181.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461294    GT:AD:DP:GQ:PL    1/1:0,6:11:33.11:2039,33,0
4    55151711    rs2412559    C    A    4731.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=35.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507536    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4731,346,0
4    55151958    rs3830355    T    TA    1905    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=1;HaplotypeScore=93.1196;IndelType=I;MQ=60.26;MQ0=0;QD=45.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507536    GT:AD:DP:GQ:PL    1/1:1,41:42:99:1947,123,0
4    55152284    rs4864872    T    G    329.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507536    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:363,27,0
4    55153837    rs7695657    A    G    161.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
4    55156380    rs4864506    G    A    310.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:344,27,0
4    55156400    rs2276948    A    G    536.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=35.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:570,45,0
4    55161254    rs3733540    C    T    1620.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1654,129,0
4    55161391    rs7685117    T    C    2846.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9456;MQ=58.83;MQ0=0;QD=30.94;SNPEFF_AMINO_ACID_CHANGE=D1074;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_55161292_55164414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257290    GT:AD:DP:GQ:PL    1/1:0,91:92:99:2880,235,0
4    55161517    rs7680422    A    G    1317.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7337;MQ=59.42;MQ0=0;QD=32.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FIP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507166    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1351,102,0
4    55524304    rs999020    T    C    123.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.256;QD=8.21;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288135    GT:AD:DP:GQ:PL    0/1:6,9:15:99:153,0,133
4    55573693    rs17240054    G    A    55.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288135    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
4    55599436    rs1008658    T    C    1353.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.915;DB;DP=42;Dels=0.0;FS=8.456;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.443;QD=32.23;ReadPosRankSum=2.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288135    GT:AD:DP:GQ:PL    1/1:2,40:42:69.60:1387,70,0
4    55946081    rs4421048    A    G    1407.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=31.28;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1441,123,0
4    55946171    rs35961234    G    A    798    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.535;DB;DP=77;Dels=0.0;FS=1.942;HRun=0;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;MQRankSum=0.898;QD=10.36;ReadPosRankSum=0.197;SNPEFF_AMINO_ACID_CHANGE=T1336;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_55944644_55946330;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    0/1:47,30:77:99:828,0,1387
4    55948108    rs2412617    A    G    2141.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2174,157,0
4    55955737    rs3217703    A    AT    664.97    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.121;DB;DP=45;FS=1.614;HRun=10;HaplotypeScore=129.9297;IndelType=I;MQ=58.69;MQ0=0;MQRankSum=0.609;QD=14.78;ReadPosRankSum=0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    0/1:19,26:45:99:704,0,268
4    55968053    rs7655964    A    C    721.74    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=-1.5;QD=15.69;ReadPosRankSum=0.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512566    GT:AD:DP:GQ:PL    0/1:21,25:46:99:752,0,635
4    55971846    rs76744723    G    T    669.11    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.42;MQ0=0;MQRankSum=-0.677;QD=16.73;ReadPosRankSum=1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    0/1:19,21:40:99:699,0,658
4    55974290    rs6846151    C    G    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    55976451    rs3828550    G    A    333.59    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.732;QD=19.62;ReadPosRankSum=2.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    0/1:7,10:17:99:364,0,192
4    55976947    rs111346496    T    TAA    956.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.446;DB;DP=60;FS=2.45;HRun=13;HaplotypeScore=388.0932;IndelType=I;MQ=50.51;MQ0=0;MQRankSum=1.932;QD=15.94;ReadPosRankSum=0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    1/1:37,12:60:36.44:998,36,0
4    55980239    rs7692791    C    T    1288.41    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=0.119;DB;DP=71;Dels=0.0;FS=3.986;HRun=1;HaplotypeScore=0.734;MQ=59.35;MQ0=0;MQRankSum=0.715;QD=18.15;ReadPosRankSum=0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263923    GT:AD:DP:GQ:PL    0/1:29,42:71:99:1318,0,924
4    56225353    rs11133375    G    A    388.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRD5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264228    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:422,33,0
4    56233552    rs6554276    T    G    123.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRD5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264228    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
4    56290573    rs6810483    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381334    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
4    56291479    rs7677952    C    T    502.12    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.512;QD=14.35;ReadPosRankSum=-0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509575    GT:AD:DP:GQ:PL    0/1:17,18:35:99:532,0,564
4    56291528    rs7660517    T    C    623.25    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=67;Dels=0.0;FS=3.5;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.158;QD=9.3;ReadPosRankSum=0.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509575    GT:AD:DP:GQ:PL    0/1:38,29:67:99:653,0,1162
4    56291620    rs35154686    CAA    C    1068.66    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=5.622;DB;DP=55;FS=0.0;HRun=2;HaplotypeScore=187.864;IndelType=D;MQ=60.59;MQ0=0;MQRankSum=-1.087;QD=19.43;ReadPosRankSum=0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509575    GT:AD:DP:GQ:PL    0/1:29,26:55:99:1108,0,1583
4    56309992    rs3736544    A    G    872.88    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=0.016;DB;DP=58;Dels=0.0;FS=2.23;HRun=0;HaplotypeScore=2.7833;MQ=59.22;MQ0=0;MQRankSum=-0.452;QD=14.79;ReadPosRankSum=-1.637;SNPEFF_AMINO_ACID_CHANGE=N588;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_56309854_56310063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309964    GT:AD:DP:GQ:PL    0/1:27,31:58:99:903,0,849
4    56310621    rs12643926    C    T    38.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-0.361;QD=4.29;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309964    GT:AD:DP:GQ:PL    0/1:5,4:9:68.63:69,0,183
4    56310622    rs12647034    A    G    38.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-1.307;QD=4.29;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309964    GT:AD:DP:GQ:PL    0/1:5,4:9:68.63:69,0,181
4    56315178    rs6811520    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506747    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    56319105    rs2412647    C    T    31.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506747    GT:AD:DP:GQ:PL    0/1:4,2:6:61.96:62,0,135
4    56322244    rs10529254    TG    T    193.05    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=88.4469;IndelType=D;MQ=58.98;MQ0=0;MQRankSum=-0.38;QD=8.04;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309964    GT:AD:DP:GQ:PL    0/1:12,11:24:99:232,0,176
4    56329773    rs1522112    T    C    382.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=26;Dels=0.0;FS=6.576;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=14.72;ReadPosRankSum=0.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435527    GT:AD:DP:GQ:PL    0/1:13,13:26:99:413,0,418
4    56337041    rs3805151    T    C    451    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.815;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9907;MQ=59.2;MQ0=0;MQRankSum=1.069;QD=15.55;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309964    GT:AD:DP:GQ:PL    0/1:14,15:29:99:481,0,502
4    56342326    rs9312661    G    A    40.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506923    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:71,0,70
4    56345236    rs10462032    T    C    143.57    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=20.51;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509151    GT:AD:DP:GQ:PL    0/1:2,5:7:53.01:174,0,53
4    56345255    rs13102385    T    C    68.40    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=49.96;MQ0=0;MQRankSum=0.727;QD=13.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLOCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509151    GT:AD:DP:GQ:PL    0/1:2,3:5:22.32:98,0,22
4    56423002    rs112231127    G    GT    127.06    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=16;FS=0.0;HRun=9;HaplotypeScore=39.2351;IndelType=I;MQ=62.0;MQ0=0;MQRankSum=0.466;QD=7.94;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    0/1:10,6:16:97.18:166,0,97
4    56428820    rs2279458    C    T    507.66    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=31;Dels=0.0;FS=5.932;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.148;QD=16.38;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    0/1:13,18:31:99:538,0,399
4    56435748    rs972446    C    A    143.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
4    56435849    rs28445925    T    C    532.99    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=4.306;DB;DP=40;Dels=0.0;FS=1.618;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.542;QD=13.32;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    0/1:21,19:40:99:563,0,643
4    56447146    rs34437483    GA    G    264.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=41.6781;IndelType=D;MQ=60.0;MQ0=0;QD=20.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    1/1:2,11:13:30.07:306,30,0
4    56447215    rs6817663    A    G    82.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.41;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    0/1:2,3:5:49.90:112,0,50
4    56448029    rs2130036    C    T    81.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.99;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:111,0,27
4    56448144    rs9790523    G    A    886.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5558;MQ=59.12;MQ0=0;MQRankSum=0.2;QD=15.82;ReadPosRankSum=-1.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    0/1:24,32:56:99:916,0,775
4    56448235    rs10866425    C    T    2989.02    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.089;DB;DP=202;Dels=0.0;FS=6.592;HRun=2;HaplotypeScore=2.755;MQ=59.48;MQ0=0;MQRankSum=-1.234;QD=14.8;ReadPosRankSum=1.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295645    GT:AD:DP:GQ:PL    0/1:96,106:202:99:3019,0,2943
4    56465418    rs1387198    T    C    599.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264218    GT:AD:DP:GQ:PL    1/1:0,20:20:54.13:632,54,0
4    56466653    rs62310886    G    A    624.44    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.321;DB;DP=36;Dels=0.0;FS=2.483;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.064;QD=17.35;ReadPosRankSum=-0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264218    GT:AD:DP:GQ:PL    0/1:15,21:36:99:654,0,417
4    56471293    rs7681959    A    G    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264218    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
4    56471551    rs3805382    A    G    848.27    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.191;DB;DP=70;Dels=0.0;FS=2.968;HRun=0;HaplotypeScore=1.7234;MQ=60.0;MQ0=0;MQRankSum=-1.216;QD=12.12;ReadPosRankSum=0.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264218    GT:AD:DP:GQ:PL    0/1:41,29:70:99:878,0,1264
4    56734701    rs3213948    C    T    245    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.531;DB;DP=20;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.8321;MQ=58.84;MQ0=0;MQRankSum=0.694;QD=12.25;ReadPosRankSum=-0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346134    GT:AD:DP:GQ:PL    0/1:11,9:20:99:275,0,325
4    56736794    .    T    TTTTG    346.40    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.17;DP=24;FS=0.0;HRun=0;HaplotypeScore=87.433;IndelType=I;MQ=61.34;MQ0=0;MQRankSum=1.359;QD=14.43;ReadPosRankSum=-1.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505501    GT:AD:DP:GQ:PL    0/1:17,6:24:99:385,0,470
4    56756531    rs2290016    T    C    419.83    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.786;DB;DP=29;Dels=0.0;FS=12.492;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.465;QD=14.48;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=A491;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_56756389_56756552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349598    GT:AD:DP:GQ:PL    0/1:12,17:29:99:450,0,372
4    56763170    rs10014018    A    G    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504321    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
4    56766158    rs17086138    C    T    174.64    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=15.88;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346134    GT:AD:DP:GQ:PL    0/1:4,7:11:99:205,0,129
4    56835413    rs1811473    C    T    121.50    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=20.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515081    GT:AD:DP:GQ:PL    0/1:1,5:6:19.30:151,0,19
4    56877725    rs191768874    G    T    284.70    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DB;DP=32;Dels=0.03;FS=2.681;HRun=14;HaplotypeScore=5.6262;MQ=57.15;MQ0=0;MQRankSum=-1.955;QD=8.63;ReadPosRankSum=1.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257287    GT:AD:DP:GQ:PL    0/1:14,18:32:99:315,0,370
4    56887142    rs114044550    G    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257287    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
4    57176710    rs13123803    G    A    213.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503618    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:247,18,0
4    57176965    rs58033591    T    C    73.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=1.7329;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=8.14;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503618    GT:AD:DP:GQ:PL    0/1:3,6:9:51.44:103,0,51
4    57179131    rs12331412    G    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505410    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
4    57179649    rs6554344    A    T    398.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505410    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:432,33,0
4    57181629    rs61750793    C    T    39.93    QDFilter2    AB=0.054;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=37;Dels=0.0;FS=5.819;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.587;QD=1.08;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=P564L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57180206_57182501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546221    GT:AD:DP:GQ:PL    0/1:2,35:37:32.79:70,0,33
4    57181632    rs7672073    G    C    56.07    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=1.52;SNPEFF_AMINO_ACID_CHANGE=R565P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57180206_57182501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546221    GT:AD:DP:GQ:PL    1/1:1,36:37:8.97:88,9,0
4    57181995    rs3796547    C    T    2099.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=S686L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57180206_57182501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546221    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2133,163,0
4    57182647    rs3822003    G    A    983.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DB;DP=31;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.9983;MQ=59.25;MQ0=0;MQRankSum=-1.617;QD=31.71;ReadPosRankSum=1.271;SNPEFF_AMINO_ACID_CHANGE=A986;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57180206_57182855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541073    GT:AD:DP:GQ:PL    1/1:1,30:31:50.82:1016,51,0
4    57182758    rs28559894    C    T    646.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=29.4;SNPEFF_AMINO_ACID_CHANGE=D1023;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57180206_57182855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541073    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:680,54,0
4    57182975    rs57503982    A    G    225.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=25.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264229    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:259,21,0
4    57516896    rs4371677    G    A    749.30    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.765;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.5;MQ0=0;MQRankSum=-0.284;QD=16.29;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=P76L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57516849_57516978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOPX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381260    GT:AD:DP:GQ:PL    0/1:21,25:46:99:779,0,506
4    57522220    rs4626270    A    G    34.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=5.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317745    GT:AD:DP:GQ:PL    0/1:3,3:6:64.18:64,0,101
4    57523869    rs7693834    T    C    291.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.416;QD=14.59;ReadPosRankSum=0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337881    GT:AD:DP:GQ:PL    0/1:10,10:20:99:322,0,315
4    57524124    rs6857396    T    C    30.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=4.36;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337881    GT:AD:DP:GQ:PL    0/1:4,3:7:60.52:61,0,152
4    57547802    rs28362615    C    T    762.75    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=0.134;DB;DP=55;Dels=0.0;FS=2.38;HRun=2;HaplotypeScore=0.9665;MQ=59.24;MQ0=0;MQRankSum=0.383;QD=13.87;ReadPosRankSum=0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509435    GT:AD:DP:GQ:PL    0/1:26,29:55:99:793,0,759
4    57548038    rs7659063    G    T    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=5.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_57547421_57548065;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOPX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337881    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,132
4    57797414    rs3796529    C    T    2860.32    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.772;DB;DP=209;Dels=0.0;FS=0.535;HRun=0;HaplotypeScore=5.3481;MQ=59.45;MQ0=0;MQRankSum=0.783;QD=13.69;ReadPosRankSum=1.442;SNPEFF_AMINO_ACID_CHANGE=P774L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57796000_57798318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358605    GT:AD:DP:GQ:PL    0/1:101,108:209:99:2890,0,2942
4    57798189    rs2227901    G    A    334.36    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=3.418;DB;DP=37;Dels=0.0;FS=5.887;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.139;QD=9.04;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=A1032;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57796000_57798318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358605    GT:AD:DP:GQ:PL    0/1:22,15:37:99:364,0,686
4    57798469    rs781667    A    G    81.02    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.26;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358605    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:111,0,29
4    57829484    .    G    GA    244.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.159;DP=13;FS=0.0;HRun=13;HaplotypeScore=57.7074;IndelType=I;MQ=59.06;MQ0=0;MQRankSum=1.159;QD=18.79;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264230    GT:AD:DP:GQ:PL    1/1:2,11:13:15.66:286,16,0
4    57830501    rs9996331    G    A    456.65    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.875;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7845;MQ=59.41;MQ0=0;MQRankSum=1.003;QD=12.02;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264230    GT:AD:DP:GQ:PL    0/1:21,17:38:99:487,0,691
4    57839280    rs57265257    A    T    1140.87    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.778;DB;DP=83;Dels=0.0;FS=2.984;HRun=0;HaplotypeScore=0.8321;MQ=59.72;MQ0=0;MQRankSum=1.351;QD=13.75;ReadPosRankSum=0.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264230    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1171,0,1540
4    57843320    rs4865167    A    G    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_AMINO_ACID_CHANGE=C144;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57842608_57844989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264230    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
4    57857188    rs3733309    A    G    81.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.3;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433463    GT:AD:DP:GQ:PL    0/1:2,3:5:63.53:111,0,64
4    57861117    rs1713951    G    A    307.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.71;MQ0=0;MQRankSum=1.423;QD=27.96;ReadPosRankSum=1.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433463    GT:AD:DP:GQ:PL    1/1:1,10:11:27.09:341,27,0
4    57861358    rs2293175    C    T    111.04    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=16;Dels=0.0;FS=2.663;HRun=4;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.793;QD=6.94;ReadPosRankSum=1.586;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433463    GT:AD:DP:GQ:PL    0/1:11,5:16:99:141,0,374
4    57871750    .    T    TTC    585.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.822;DP=21;FS=3.59;HRun=0;HaplotypeScore=95.8136;IndelType=I;MQ=60.39;MQ0=0;MQRankSum=0.274;QD=27.87;ReadPosRankSum=0.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314595    GT:AD:DP:GQ:PL    1/1:6,15:21:14.47:627,14,0
4    57872900    .    C    CT    313.44    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.096;DP=21;FS=0.0;HRun=8;HaplotypeScore=47.1634;IndelType=I;MQ=59.11;MQ0=0;MQRankSum=-1.102;QD=14.93;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314595    GT:AD:DP:GQ:PL    0/1:9,12:21:99:352,0,184
4    57876955    rs1718878    G    A    1298.70    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=4.232;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9497;MQ=59.79;MQ0=0;MQRankSum=-0.25;QD=14.93;ReadPosRankSum=1.011;SNPEFF_AMINO_ACID_CHANGE=A455;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57876914_57877053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431623    GT:AD:DP:GQ:PL    0/1:44,43:87:99:1329,0,1227
4    57881715    rs1713982    G    A    1238.31    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=3.496;DB;DP=85;Dels=0.0;FS=0.831;HRun=0;HaplotypeScore=0.9998;MQ=59.73;MQ0=0;MQRankSum=0.623;QD=14.57;ReadPosRankSum=1.781;SNPEFF_AMINO_ACID_CHANGE=T541;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57881668_57881822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431623    GT:AD:DP:GQ:PL    0/1:47,38:85:99:1268,0,1215
4    57883084    rs1713983    A    G    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510355    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
4    57883175    rs1718866    G    C    922.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510355    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:955,69,0
4    57883558    rs1630798    T    C    283.61    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.94;DB;DP=22;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.89;ReadPosRankSum=0.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510355    GT:AD:DP:GQ:PL    0/1:9,13:22:99:314,0,310
4    57886946    rs1718831    T    G    118.50    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.7;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314595    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:148,0,27
4    57889332    rs1718862    G    A    76.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314595    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
4    57889677    rs1056364    C    T    511.32    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DB;DP=47;Dels=0.0;FS=6.349;HRun=0;HaplotypeScore=1.7845;MQ=60.0;MQ0=0;MQRankSum=-0.293;QD=10.88;ReadPosRankSum=-1.42;SNPEFF_AMINO_ACID_CHANGE=S824;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_57889496_57889746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431623    GT:AD:DP:GQ:PL    0/1:28,19:47:99:541,0,767
4    57891239    rs6843644    G    A    213.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=15.27;ReadPosRankSum=-1.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464918    GT:AD:DP:GQ:PL    0/1:7,7:14:99:244,0,249
4    57891386    rs1614251    C    T    64.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.81;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464918    GT:AD:DP:GQ:PL    0/1:2,3:5:54.39:94,0,54
4    57896699    rs1277307    G    T    132.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295666    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
4    57897570    rs12621    G    T    465.16    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.99;MQ0=0;MQRankSum=-0.954;QD=14.54;ReadPosRankSum=1.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537922    GT:AD:DP:GQ:PL    0/1:17,15:32:99:495,0,539
4    61529532    rs7683721    T    C    1209.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC095061.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401208    GT:AD:DP:GQ:PL    1/1:0,36:37:90.30:1242,90,0
4    62293226    rs34759363    T    A    2902.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.78;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512091    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2935,214,0
4    62293300    rs7687816    A    G    1583.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512091    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1617,129,0
4    62293449    rs6821028    C    A    450.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512091    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:483,36,0
4    62293487    rs6819638    G    A    441.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512091    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:475,36,0
4    62293678    rs6820040    G    A    1214.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512091    GT:AD:DP:GQ:PL    1/1:0,36:36:93.28:1247,93,0
4    62293738    rs78066454    A    C    1341.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=59.49;MQ0=0;QD=29.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512091    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1375,105,0
4    62293789    rs56127625    G    T    1546.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512091    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1579,114,0
4    62363252    rs2880589    C    G    65.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=9.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    1/1:0,7:7:9.02:98,9,0
4    62445246    rs10018746    T    C    1388.97    PASS    AB=0.402;AC=1;AF=0.50;AN=2;BaseQRankSum=4.372;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6272;MQ=59.75;MQ0=0;MQRankSum=-0.175;QD=15.1;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    0/1:37,55:92:99:1419,0,1147
4    62449316    rs3075153    GTA    G    2116.06    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=9.272;DB;DP=119;FS=0.0;HRun=0;HaplotypeScore=379.0611;IndelType=D;MQ=59.88;MQ0=0;MQRankSum=1.006;QD=17.78;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    0/1:64,55:119:99:2155,0,3188
4    62453209    rs2172802    A    G    900.63    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=61;Dels=0.0;FS=5.479;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.443;QD=14.76;ReadPosRankSum=0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    0/1:34,27:61:99:931,0,1109
4    62542879    rs1391319    G    C    326.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:360,27,0
4    62542957    rs4860425    C    A    125.71    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.749;QD=11.43;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    0/1:6,5:11:99:156,0,214
4    62598689    rs10434219    C    T    5969.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=174;Dels=0.0;FS=4.621;HRun=0;HaplotypeScore=6.3422;MQ=59.6;MQ0=0;MQRankSum=1.452;QD=34.31;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=H204;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_62598472_62599272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    1/1:1,173:174:99:5970,414,0
4    62599289    rs9312082    G    A    2757.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2790,208,0
4    62758251    rs7691112    A    G    268.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.675;QD=12.79;ReadPosRankSum=1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    0/1:12,9:21:99:299,0,437
4    62775479    rs150036248    ATG    A    161.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=213.7262;IndelType=D;MQ=55.4;MQ0=0;MQRankSum=0.747;QD=6.19;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    1/1:17,6:26:20:203,20,0
4    62800554    rs2305339    G    A    2679.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280009    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2713,202,0
4    62800728    rs734644    T    C    4296.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3972;MQ=59.82;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=N680;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_62800558_62800741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295349    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4296,313,0
4    62845388    rs1397547    G    C    6265.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=221;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8559;MQ=59.79;MQ0=0;QD=28.35;SNPEFF_AMINO_ACID_CHANGE=R890;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_62845281_62845490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295349    GT:AD:DP:GQ:PL    1/1:0,221:221:99:6265,523,0
4    62845490    rs1397548    A    G    5038.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.146;DB;DP=149;Dels=0.0;FS=4.099;HRun=1;HaplotypeScore=0.734;MQ=59.85;MQ0=0;MQRankSum=-1.443;QD=33.82;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=P1005;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_62845281_62845490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPHN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506720    GT:AD:DP:GQ:PL    1/1:2,147:149:99:5038,331,0
4    65145955    rs1483711    T    G    1067.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.91;MQ0=0;QD=28.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:0,38:38:84.27:1100,84,0
4    65145966    rs5858871    T    TAA    1788.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=3;HaplotypeScore=180.0168;IndelType=I;MQ=55.16;MQ0=0;QD=59.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:0,30:30:90.31:1831,90,0
4    65146700    rs10012755    A    G    761.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:794,60,0
4    65146711    rs1483709    T    C    916.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:949,75,0
4    65146978    rs10000773    T    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    65147404    rs10001161    T    C    83.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    65155584    rs72638955    C    A    172.95    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=24.71;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    0/1:1,6:7:21.94:203,0,22
4    65165661    rs11935568    G    A    2585.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511356    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2619,190,0
4    65165849    rs13139627    G    A    933.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=38.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511356    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:966,72,0
4    65180230    rs1965938    T    C    279.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
4    65180308    rs35904823    GGTGTGTGTGTGT    G    785.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=264.6639;IndelType=D;MQ=42.55;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:14,9:23:30.09:828,30,0
4    65240805    rs6551827    A    T    127.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381210    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
4    66214043    rs2290254    G    A    119.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=14.99;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    0/1:3,5:8:95.03:150,0,95
4    66218728    rs3792649    C    T    160.27    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.856;DB;DP=20;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.361;QD=8.01;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    0/1:14,6:20:99:190,0,416
4    66233029    rs2198104    A    G    169.75    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=9.99;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    0/1:9,8:17:99:200,0,259
4    66270241    rs3749525    A    G    434.97    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.548;DB;DP=27;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=16.11;ReadPosRankSum=0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    0/1:13,14:27:99:465,0,392
4    66286088    rs6551921    G    A    945.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:979,75,0
4    66286100    rs6551922    T    C    1213.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    1/1:0,34:34:93.28:1247,93,0
4    66286414    rs6551923    T    C    158.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
4    66468046    rs33967107    TA    T    359.31    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=4.952;DB;DP=46;FS=6.15;HRun=8;HaplotypeScore=107.2809;IndelType=D;MQ=59.83;MQ0=0;MQRankSum=0.092;QD=7.81;ReadPosRankSum=1.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    0/1:28,18:46:99:398,0,710
4    66509085    rs33932471    T    G    755.65    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.476;QD=15.11;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=N81T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_66509081_66509145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    0/1:24,26:50:99:786,0,775
4    66509194    rs4343775    T    C    341.76    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.681;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.136;QD=10.68;ReadPosRankSum=-0.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273854    GT:AD:DP:GQ:PL    0/1:20,12:32:99:372,0,592
4    67142262    rs7437072    G    T    63.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=53.82;MQ0=0;MQRankSum=0.406;QD=10.53;ReadPosRankSum=1.537;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1269;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408636    GT:AD:DP:GQ:PL    0/1:3,3:6:51.82:93,0,52
4    67142335    rs35732546    A    G    161.26    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.596;QD=6.45;ReadPosRankSum=-0.954;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1269;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408636    GT:AD:DP:GQ:PL    0/1:15,9:25:99:191,0,526
4    67142620    rs73239138    G    A    617.49    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=45;Dels=0.0;FS=3.324;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=13.72;ReadPosRankSum=1.268;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1269;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408636    GT:AD:DP:GQ:PL    0/1:25,20:45:99:647,0,778
4    68311813    .    T    C    45.53    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.01;MQ0=0;QD=15.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-584P21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502400    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
4    68312371    rs4105202    A    G    58    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.404;QD=4.83;ReadPosRankSum=1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-584P21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508720    GT:AD:DP:GQ:PL    0/1:9,3:12:87.99:88,0,332
4    68312401    rs7668339    A    G    74.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.6;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-584P21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508720    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,144
4    68338247    rs116290223    G    T    34.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515140    GT:AD:DP:GQ:PL    0/1:4,2:6:64.94:65,0,135
4    68340782    rs190534549    C    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:2,2:4:53.90:71,0,54
4    68357814    rs1497430    A    G    51.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.31;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510189    GT:AD:DP:GQ:PL    0/1:3,4:7:81.15:81,0,90
4    68360955    rs2646282    A    G    522.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    1/1:0,18:18:42.11:556,42,0
4    68371174    rs41278559    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    68372376    rs355513    G    C    229.66    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.993;QD=15.31;ReadPosRankSum=-1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:7,8:15:99:260,0,246
4    68374378    rs355515    T    C    54.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=6.01;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506410    GT:AD:DP:GQ:PL    0/1:6,3:9:84.06:84,0,218
4    68374597    rs1056789    C    T    3080.92    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=198;Dels=0.0;FS=2.521;HRun=0;HaplotypeScore=1.5777;MQ=59.83;MQ0=0;MQRankSum=0.294;QD=15.56;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=S613;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_68374532_68374823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:98,100:198:99:3111,0,2660
4    68380215    rs11250    G    A    1463.26    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=112;Dels=0.0;FS=3.679;HRun=2;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.906;QD=13.06;ReadPosRankSum=0.631;SNPEFF_AMINO_ACID_CHANGE=L341F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_68379792_68380405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:57,55:112:99:1493,0,1887
4    68384008    rs355510    C    T    364.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=35;Dels=0.0;FS=1.324;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.083;QD=10.42;ReadPosRankSum=-0.683;SNPEFF_AMINO_ACID_CHANGE=S232;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_68383874_68384086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:20,15:35:99:395,0,586
4    68384861    rs355507    G    T    589.09    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.073;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=15.5;ReadPosRankSum=-0.512;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:18,20:38:99:619,0,532
4    68396387    rs1391110    A    T    94.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=11.81;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:4,4:8:99:124,0,104
4    68396525    rs355477    G    C    1237.90    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.541;DB;DP=71;Dels=0.0;FS=1.251;HRun=1;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=0.53;QD=17.44;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:30,41:71:99:1268,0,973
4    68406626    rs66938463    TATTA    T    677.70    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=3.788;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=104.7997;IndelType=D;MQ=50.86;MQ0=1;MQRankSum=-0.512;QD=29.47;ReadPosRankSum=-1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:9,14:22:99:717,0,574
4    68410009    rs17625547    C    T    351.66    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.383;QD=13.02;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273853    GT:AD:DP:GQ:PL    0/1:14,13:27:99:382,0,458
4    68416393    rs71667396    T    TA    264.29    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=1.465;DB;DP=38;FS=0.0;HRun=15;HaplotypeScore=251.9824;IndelType=I;MQ=53.61;MQ0=0;MQRankSum=0.586;QD=6.95;ReadPosRankSum=-2.134;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:26,11:38:99:303,0,112
4    68416639    rs5741940    GTTGTTTTGTTTTGTT    G    1571.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.404;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=432.5037;IndelType=D;MQ=48.16;MQ0=0;MQRankSum=-0.413;QD=50.7;ReadPosRankSum=1.569;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:10,21:31:58.90:1614,59,0
4    68436576    rs28414931    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265404    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    68436883    rs13111555    T    C    3943.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265404    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3944,289,0
4    68442968    rs11556614    A    G    476.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=33;Dels=0.0;FS=1.643;HRun=1;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;MQRankSum=0.415;QD=14.43;ReadPosRankSum=1.285;SNPEFF_AMINO_ACID_CHANGE=T118;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_68442921_68442977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265404    GT:AD:DP:GQ:PL    0/1:16,16:33:99:506,0,484
4    68447040    rs11556615    C    T    742.61    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=59;Dels=0.0;FS=3.84;HRun=0;HaplotypeScore=1.6988;MQ=59.61;MQ0=0;MQRankSum=-0.717;QD=12.59;ReadPosRankSum=0.14;SNPEFF_AMINO_ACID_CHANGE=N127;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_68447023_68447189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265404    GT:AD:DP:GQ:PL    0/1:31,28:59:99:773,0,993
4    68447249    rs2242330    A    G    590.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.392;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.656;QD=19.7;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265404    GT:AD:DP:GQ:PL    0/1:12,18:30:99:621,0,396
4    68447352    rs2242329    A    G    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265404    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
4    68458937    rs3816821    G    C    1057.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265404    GT:AD:DP:GQ:PL    1/1:0,28:28:81.25:1090,81,0
4    68496080    rs354866    G    A    223.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322244    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:257,21,0
4    68499163    .    C    G    1134.36    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.114;DP=83;Dels=0.0;FS=1.944;HRun=1;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=13.67;ReadPosRankSum=-1.182;SNPEFF_AMINO_ACID_CHANGE=G681A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_68499063_68499191;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322244    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1164,0,1378
4    68504951    rs3806809    T    C    213.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322244    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:247,18,0
4    68698757    rs6834472    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502822    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    68700956    rs76422731    A    G    404.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502822    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:437,36,0
4    68785042    rs80249774    C    T    291.08    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.501;QD=11.2;ReadPosRankSum=1.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334830    GT:AD:DP:GQ:PL    0/1:16,10:26:99:321,0,566
4    68812283    rs11930532    C    T    683.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_AMINO_ACID_CHANGE=V5;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_68812168_68812289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508048    GT:AD:DP:GQ:PL    1/1:0,23:23:54.15:716,54,0
4    68829207    rs6552134    G    A    588.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.21;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508048    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:621,45,0
4    68904637    rs6552141    A    C    870.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.34;MQ0=1;QD=29.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-35D5.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440470    GT:AD:DP:GQ:PL    1/1:0,30:30:78.22:904,78,0
4    68904834    rs9999589    T    G    1788.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.75;MQ0=0;QD=32.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-35D5.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440470    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1822,144,0
4    68905097    rs4860273    G    A    1499.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.37;MQ0=2;QD=31.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-35D5.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440470    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1533,120,0
4    68905175    rs4860274    C    G    1420.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.85;MQ0=8;QD=25.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-35D5.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440470    GT:AD:DP:GQ:PL    1/1:4,50:54:99:1453,111,0
4    68905270    rs4860275    A    G    785.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=49.14;MQ0=0;QD=29.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-35D5.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440470    GT:AD:DP:GQ:PL    1/1:0,27:27:66.19:818,66,0
4    68919617    rs10018943    G    A    1022.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356291    GT:AD:DP:GQ:PL    1/1:0,34:35:78.25:1055,78,0
4    68928740    rs1837215    G    A    3732.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.6;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356291    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3732,280,0
4    68934252    rs1079449    A    C    290.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356291    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
4    68934306    rs10004522    G    A    668.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356291    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:702,57,0
4    68956422    rs57121360    T    A    1457.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356291    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1491,114,0
4    68956498    rs13115830    C    T    594.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356291    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:628,48,0
4    69094265    rs7434397    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502365    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
4    69094507    rs2319797    T    A    1552.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8386;MQ=58.95;MQ0=0;QD=35.29;SNPEFF_AMINO_ACID_CHANGE=T348S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69094460_69094602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332644    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1586,117,0
4    69094575    rs2319796    T    G    1308.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=D325A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69094460_69094602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332644    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1342,99,0
4    69094926    rs63181060    TTAAA    T    1932.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=183.4891;IndelType=D;MQ=64.15;MQ0=0;QD=55.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502365    GT:AD:DP:GQ:PL    1/1:1,34:35:99:1975,102,0
4    69095197    rs12331141    T    C    1694.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=59.54;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=I242V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69094975_69095234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332644    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1727,129,0
4    69096810    rs10024748    G    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=14.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502365    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
4    69097150    rs34209851    TA    T    355.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=39.559;IndelType=D;MQ=59.92;MQ0=0;QD=22.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502365    GT:AD:DP:GQ:PL    1/1:3,13:16:39.08:397,39,0
4    69110962    rs7665124    C    T    79.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332644    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
4    69181899    rs72599795    C    CAG    1647.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=138.8956;IndelType=I;MQ=61.96;MQ0=0;QD=51.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344157    GT:AD:DP:GQ:PL    1/1:2,29:32:90.30:1690,90,0
4    69181942    rs115512860    G    A    1006.09    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=4.251;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.01;MQ0=0;MQRankSum=0.528;QD=19.35;ReadPosRankSum=-1.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344157    GT:AD:DP:GQ:PL    0/1:22,30:52:99:1036,0,625
4    69203551    rs10213623    A    T    1584.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=S66;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69203290_69203618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344157    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1618,117,0
4    69215349    rs7667575    A    G    200.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.5049;MQ=56.62;MQ0=0;MQRankSum=1.396;QD=14.32;ReadPosRankSum=-0.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344157    GT:AD:DP:GQ:PL    1/1:2,10:14:24.01:233,24,0
4    69241941    rs3797008    A    G    161.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=57.66;MQ0=0;MQRankSum=0.633;QD=16.13;ReadPosRankSum=1.447;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MT1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262499    GT:AD:DP:GQ:PL    0/1:4,6:10:99:191,0,130
4    69337325    rs2603188    C    G    1555.38    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=116;Dels=0.0;FS=2.687;HRun=0;HaplotypeScore=2.8054;MQ=59.4;MQ0=0;MQRankSum=0.844;QD=13.41;ReadPosRankSum=0.955;SNPEFF_AMINO_ACID_CHANGE=H158Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69337178_69337341;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    0/1:62,54:116:99:1585,0,2006
4    69337448    rs34883218    G    A    435.16    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.874;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=18.13;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    0/1:10,14:24:99:465,0,308
4    69340500    rs2603187    A    G    1240.21    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=4.414;DB;DP=97;Dels=0.0;FS=9.442;HRun=0;HaplotypeScore=1.9936;MQ=59.38;MQ0=0;MQRankSum=-0.049;QD=12.79;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    0/1:51,45:97:99:1270,0,1460
4    69340657    rs62317863    T    G    38.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=9.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    0/1:2,2:4:30.98:68,0,31
4    69341826    rs2603183    C    T    919.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    1/1:0,26:26:75.20:953,75,0
4    69342169    rs983745    G    C    1004.24    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.662;DB;DP=66;Dels=0.0;FS=4.658;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.199;QD=15.22;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    0/1:34,32:66:99:1034,0,1111
4    69342267    rs2708698    G    A    509.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:542,42,0
4    69343353    rs1026341    A    G    1063.74    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.169;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.7;MQ0=0;MQRankSum=-0.405;QD=13.81;ReadPosRankSum=0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    0/1:43,34:77:99:1094,0,1462
4    69344733    rs2603180    G    T    1326.31    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=86;Dels=0.0;FS=4.545;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-1.631;QD=15.42;ReadPosRankSum=0.989;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS11E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305363    GT:AD:DP:GQ:PL    0/1:42,43:86:99:1356,0,1429
4    69512651    rs146792502    T    TC    227.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=33.6251;IndelType=I;MQ=52.61;MQ0=0;QD=37.96;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338206    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:270,18,0
4    69512654    rs3100    G    A    44.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.61;MQ0=0;QD=7.49;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338206    GT:AD:DP:GQ:PL    1/1:0,6:6:8.99:77,9,0
4    69512847    rs4148269    T    G    5523.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=31.03;SNPEFF_AMINO_ACID_CHANGE=K523T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69512348_69513101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338206    GT:AD:DP:GQ:PL    1/1:0,176:178:99:5523,430,0
4    69681675    rs294776    A    T    1404.49    PASS    AB=0.161;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.721;DB;DP=56;Dels=0.0;FS=8.324;HRun=3;HaplotypeScore=0.9867;MQ=42.19;MQ0=2;MQRankSum=3.966;QD=25.08;ReadPosRankSum=0.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265403    GT:AD:DP:GQ:PL    0/1:9,47:56:35.24:1434,0,35
4    69682471    rs294777    A    G    2819.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.03;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265403    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2852,208,0
4    69682555    rs294778    G    A    1220.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=39.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265403    GT:AD:DP:GQ:PL    1/1:0,31:31:93.30:1254,93,0
4    69683953    rs114828297    G    C    5493.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3853;MQ=59.68;MQ0=0;QD=37.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265403    GT:AD:DP:GQ:PL    1/1:0,145:146:99:5494,409,0
4    69684121    rs116280486    G    T    180.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265403    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:213,18,0
4    69687964    rs114005205    G    A    5537.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.275;DB;DP=160;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.52;MQ0=0;MQRankSum=0.534;QD=34.61;ReadPosRankSum=0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265403    GT:AD:DP:GQ:PL    1/1:1,159:160:99:5537,384,0
4    69687987    rs116294140    C    A    6565.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.772;DB;DP=193;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4203;MQ=55.56;MQ0=1;MQRankSum=0.275;QD=34.02;ReadPosRankSum=-0.595;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B10;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000458688    GT:AD:DP:GQ:PL    1/1:2,191:193:99:6565,411,0
4    69692403    .    A    G    73.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=14.74;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265403    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:104,0,65
4    69795397    rs3749513    G    A    267.05    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.732;QD=15.71;ReadPosRankSum=1.025;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251566    GT:AD:DP:GQ:PL    0/1:7,10:17:99:297,0,194
4    69795626    rs13128286    C    T    991.81    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.148;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7706;MQ=59.67;MQ0=0;MQRankSum=-0.671;QD=14.37;ReadPosRankSum=-0.157;SNPEFF_AMINO_ACID_CHANGE=A208T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69795175_69795810;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420231    GT:AD:DP:GQ:PL    0/1:36,33:69:99:1022,0,993
4    69795871    rs115205753    G    C    321.01    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.876;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.17;MQ0=0;MQRankSum=0.348;QD=11.46;ReadPosRankSum=0.812;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251566    GT:AD:DP:GQ:PL    0/1:16,12:28:99:351,0,544
4    69796548    rs114644208    G    A    96.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=8.74;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251566    GT:AD:DP:GQ:PL    0/1:6,5:11:99:126,0,214
4    69796838    rs3966087    G    A    1280.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251566    GT:AD:DP:GQ:PL    1/1:0,32:32:96.30:1313,96,0
4    69798112    rs10024664    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251566    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    69810923    rs10000598    A    C    65.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=7.27;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251566    GT:AD:DP:GQ:PL    0/1:6,3:9:95.38:95,0,221
4    69870460    rs34256091    A    AT    513.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.883;DB;DP=31;FS=0.0;HRun=13;HaplotypeScore=151.4533;IndelType=I;MQ=55.61;MQ0=0;MQRankSum=-0.722;QD=16.58;ReadPosRankSum=0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-813N20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425704    GT:AD:DP:GQ:PL    1/1:7,23:31:16:556,16,0
4    69875012    rs181315329    C    T    38.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.7;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-813N20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505092    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:68,0,34
4    69875627    rs114586207    G    A    2947.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5582;MQ=54.31;MQ0=0;QD=35.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-813N20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505092    GT:AD:DP:GQ:PL    1/1:0,83:84:99:2981,220,0
4    69879718    rs2292524    A    G    3192.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.95;MQ0=3;QD=29.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-813N20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505092    GT:AD:DP:GQ:PL    1/1:2,106:108:99:3226,262,0
4    69886151    rs11730623    A    T    1436.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.244;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.71;MQ0=0;MQRankSum=2.141;QD=29.93;ReadPosRankSum=-0.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-813N20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503426    GT:AD:DP:GQ:PL    1/1:2,46:48:99:1470,102,0
4    69886275    rs115263570    T    C    54.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.42;MQ0=0;MQRankSum=0.406;QD=9.07;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-813N20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503426    GT:AD:DP:GQ:PL    0/1:3,3:6:84.39:84,0,105
4    69962078    rs7668258    T    C    63.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=6.33;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502942    GT:AD:DP:GQ:PL    0/1:6,4:10:93.28:93,0,223
4    69963160    rs12647681    A    C    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:69,0,66
4    69963168    rs12647682    A    G    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:2,2:4:68.40:70,0,68
4    69964180    rs7439326    T    C    1092.71    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.55;MQ0=0;MQRankSum=-0.471;QD=16.07;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:32,35:68:99:1123,0,1090
4    69964209    rs7438244    A    G    1390.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.594;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6157;MQ=59.39;MQ0=0;MQRankSum=1.379;QD=14.49;ReadPosRankSum=-1.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:48,48:96:99:1421,0,1480
4    69964234    rs113310412    C    CT    1096.45    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=7.852;DB;DP=113;FS=8.439;HRun=10;HaplotypeScore=635.4997;IndelType=I;MQ=59.27;MQ0=0;MQRankSum=-0.578;QD=9.7;ReadPosRankSum=0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:66,45:113:99:1135,0,924
4    69964271    rs28365062    A    G    1647.91    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.19;DB;DP=149;Dels=0.0;FS=0.685;HRun=0;HaplotypeScore=0.5784;MQ=59.21;MQ0=0;MQRankSum=1.416;QD=11.06;ReadPosRankSum=0.508;SNPEFF_AMINO_ACID_CHANGE=T245;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69964258_69964406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:81,67:149:99:1678,0,2610
4    69964521    rs7441750    G    A    1030.77    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.242;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.142;QD=15.16;ReadPosRankSum=-2.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:30,38:68:99:1061,0,1069
4    69964554    rs7441774    G    A    421.14    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.669;QD=11.7;ReadPosRankSum=-0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:21,15:36:99:451,0,759
4    69972777    rs5013211    G    A    404.31    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=-0.609;QD=21.28;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:6,13:19:99:434,0,185
4    69972949    rs4292394    C    G    2025.98    PASS    AB=0.454;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.637;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=54.34;MQ0=1;MQRankSum=-2.504;QD=14.37;ReadPosRankSum=-0.763;SNPEFF_AMINO_ACID_CHANGE=L104;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69972893_69972980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502942    GT:AD:DP:GQ:PL    0/1:64,77:141:99:2056,0,2001
4    69972952    rs4348159    C    T    2019.09    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.589;DB;DP=142;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=54.24;MQ0=1;MQRankSum=-3.376;QD=14.22;ReadPosRankSum=-0.873;SNPEFF_AMINO_ACID_CHANGE=Y105;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_69972893_69972980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502942    GT:AD:DP:GQ:PL    0/1:65,77:142:99:2049,0,2036
4    69973044    rs4337789    A    T    769.54    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.798;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=56.32;MQ0=0;MQRankSum=-1.085;QD=17.1;ReadPosRankSum=-1.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:20,25:45:99:800,0,701
4    69973134    rs11302069    CA    C    123.77    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=27.8174;IndelType=D;MQ=54.31;MQ0=0;MQRankSum=-1.881;QD=13.75;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:4,5:9:99:163,0,165
4    69973692    rs4364327    C    T    167.27    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.127;QD=8.8;ReadPosRankSum=0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305231    GT:AD:DP:GQ:PL    0/1:12,7:19:99:197,0,452
4    69978068    rs7658752    G    A    345.32    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.61;MQ0=0;MQRankSum=-0.81;QD=16.44;ReadPosRankSum=-1.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502942    GT:AD:DP:GQ:PL    0/1:10,11:21:99:375,0,336
4    69978554    rs71671437    C    CA    142.02    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=23;FS=0.0;HRun=13;HaplotypeScore=119.304;IndelType=I;MQ=58.39;MQ0=0;MQRankSum=1.381;QD=6.17;ReadPosRankSum=-1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502942    GT:AD:DP:GQ:PL    0/1:13,7:23:22.85:181,0,23
4    70071268    rs147034719    G    A    872.39    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.659;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6634;MQ=49.08;MQ0=1;MQRankSum=-7.253;QD=9.48;ReadPosRankSum=-0.786;SNPEFF_AMINO_ACID_CHANGE=D340;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70071198_70071285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446444    GT:AD:DP:GQ:PL    0/1:52,40:92:99:902,0,1495
4    70078281    rs62298955    G    C    3283.10    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.765;DB;DP=236;Dels=0.0;FS=0.509;HRun=0;HaplotypeScore=2.366;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=13.91;ReadPosRankSum=-1.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446444    GT:AD:DP:GQ:PL    0/1:123,113:236:99:3283,0,3764
4    70078507    rs62298956    A    G    734.46    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.132;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=-0.951;QD=11.48;ReadPosRankSum=0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446444    GT:AD:DP:GQ:PL    0/1:37,27:64:99:764,0,1293
4    70079975    rs7697037    A    G    1639.32    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.021;DB;DP=142;Dels=0.0;FS=5.216;HRun=3;HaplotypeScore=1.5449;MQ=55.63;MQ0=0;MQRankSum=0.675;QD=11.54;ReadPosRankSum=-1.741;SNPEFF_AMINO_ACID_CHANGE=C156R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70079720_70080449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446444    GT:AD:DP:GQ:PL    0/1:81,60:142:99:1669,0,2499
4    70080139    rs7688262    C    T    1111.52    MQFilter40    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.217;DB;DP=145;Dels=0.0;FS=13.362;HRun=4;HaplotypeScore=1.9951;MQ=37.43;MQ0=16;MQRankSum=-1.536;QD=7.67;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=R101Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70079720_70080449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446444    GT:AD:DP:GQ:PL    0/1:81,64:145:99:1142,0,1995
4    70080233    rs62298957    A    G    2002.72    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.504;DB;DP=182;Dels=0.0;FS=1.474;HRun=2;HaplotypeScore=2.979;MQ=35.96;MQ0=22;MQRankSum=-0.35;QD=11.0;ReadPosRankSum=0.725;SNPEFF_AMINO_ACID_CHANGE=S70P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70079720_70080449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446444    GT:AD:DP:GQ:PL    0/1:91,91:182:99:2033,0,2139
4    70255088    rs56223759    A    T    228.32    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=52.15;MQ0=2;MQRankSum=-0.066;QD=7.13;ReadPosRankSum=1.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    0/1:22,10:32:99:258,0,704
4    70255204    rs56313109    A    C    2353.66    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.937;DB;DP=154;Dels=0.0;FS=10.84;HRun=2;HaplotypeScore=3.9933;MQ=54.17;MQ0=2;MQRankSum=3.256;QD=15.28;ReadPosRankSum=-0.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    0/1:74,80:154:99:2384,0,2239
4    70255745    .    G    A    376.42    PASS    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=2.243;DP=175;Dels=0.0;FS=5.933;HRun=1;HaplotypeScore=0.9159;MQ=40.29;MQ0=11;MQRankSum=-1.886;QD=2.15;ReadPosRankSum=-0.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    0/1:144,31:175:99:406,0,3931
4    70255961    rs12505338    A    G    256.47    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.048;DB;DP=36;Dels=0.0;FS=5.272;HRun=0;HaplotypeScore=0.0;MQ=52.27;MQ0=0;MQRankSum=0.8;QD=7.12;ReadPosRankSum=-0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    0/1:25,11:36:99:286,0,832
4    70256944    rs62306684    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    70257118    rs4643883    G    C    1243.01    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=1.655;DB;DP=73;Dels=0.0;FS=1.519;HRun=0;HaplotypeScore=2.4941;MQ=48.94;MQ0=5;MQRankSum=0.53;QD=17.03;ReadPosRankSum=0.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    0/1:29,43:73:99:1273,0,819
4    70257364    rs7436170    T    A    2373.30    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.887;DB;DP=187;DS;Dels=0.0;FS=2.449;HRun=0;HaplotypeScore=1.7998;MQ=55.91;MQ0=0;MQRankSum=-1.467;QD=12.69;ReadPosRankSum=-0.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    0/1:104,83:187:99:2403,0,3254
4    70257386    rs28449178    G    T    2147.96    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.413;DB;DP=151;DS;Dels=0.0;FS=1.227;HRun=1;HaplotypeScore=1.665;MQ=56.21;MQ0=0;MQRankSum=-0.322;QD=14.22;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    0/1:81,70:151:99:2178,0,2640
4    70257524    rs4105056    G    T    35.82    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.02;MQ0=1;MQRankSum=-0.386;QD=2.56;ReadPosRankSum=1.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-618I10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508771    GT:AD:DP:GQ:PL    0/1:10,4:14:65.81:66,0,245
4    70261391    rs12500613    G    T    2265.23    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.033;DB;DP=211;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6598;MQ=49.19;MQ0=0;MQRankSum=0.699;QD=10.74;ReadPosRankSum=0.333;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511504    GT:AD:DP:GQ:PL    0/1:127,84:211:99:2295,0,3640
4    70261469    rs12500647    G    C    1971.59    PASS    AB=0.601;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.24;DB;DP=203;Dels=0.0;FS=5.323;HRun=0;HaplotypeScore=1.6281;MQ=54.56;MQ0=0;MQRankSum=3.427;QD=9.71;ReadPosRankSum=-0.353;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511504    GT:AD:DP:GQ:PL    0/1:122,81:203:99:2002,0,3760
4    70265111    rs17146890    C    T    281.68    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.218;DB;DP=21;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=55.51;MQ0=0;MQRankSum=-0.387;QD=13.41;ReadPosRankSum=0.176;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511504    GT:AD:DP:GQ:PL    0/1:11,10:21:99:312,0,384
4    70265463    rs62306701    T    A    1871.62    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.98;DB;DP=120;Dels=0.0;FS=0.86;HRun=0;HaplotypeScore=1.811;MQ=58.95;MQ0=0;MQRankSum=1.494;QD=15.6;ReadPosRankSum=0.584;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511504    GT:AD:DP:GQ:PL    0/1:58,61:120:99:1902,0,1839
4    70265533    rs35138882    G    C    843.92    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.335;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.57;QD=17.96;ReadPosRankSum=0.226;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511504    GT:AD:DP:GQ:PL    0/1:20,27:47:99:874,0,707
4    70267587    rs62306707    G    A    1691.45    MQFilter40    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=3.624;DB;DP=170;Dels=0.0;FS=7.658;HRun=1;HaplotypeScore=1.7998;MQ=39.45;MQ0=20;MQRankSum=-0.517;QD=9.95;ReadPosRankSum=0.309;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511504    GT:AD:DP:GQ:PL    0/1:91,79:170:99:1721,0,2048
4    70274464    rs11249540    G    A    374.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.06;MQ0=5;QD=17.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    1/1:0,22:22:36.10:408,36,0
4    70274502    rs11249541    G    A    1256.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.65;MQ0=5;QD=26.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1290,102,0
4    70274557    rs12509072    G    A    1576.07    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.756;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.99;MQ0=1;MQRankSum=0.835;QD=15.15;ReadPosRankSum=-0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:50,54:104:99:1606,0,1603
4    70274904    rs12499133    A    G    1269.02    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=101;Dels=0.0;FS=8.07;HRun=2;HaplotypeScore=0.9933;MQ=57.59;MQ0=1;MQRankSum=0.388;QD=12.56;ReadPosRankSum=-0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:49,51:101:99:1299,0,1630
4    70274929    rs12499137    A    C    1119.54    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.544;DB;DP=87;Dels=0.0;FS=4.263;HRun=0;HaplotypeScore=1.6208;MQ=55.64;MQ0=1;MQRankSum=0.605;QD=12.87;ReadPosRankSum=-0.639;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:43,44:87:99:1150,0,1539
4    70275019    rs12512886    C    T    755.35    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=2.886;DB;DP=104;Dels=0.0;FS=4.052;HRun=1;HaplotypeScore=0.0;MQ=50.07;MQ0=1;MQRankSum=-2.97;QD=7.26;ReadPosRankSum=1.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:69,35:104:99:785,0,2293
4    70275039    rs12512889    C    A    655.07    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=107;Dels=0.0;FS=6.011;HRun=0;HaplotypeScore=0.0;MQ=49.28;MQ0=1;MQRankSum=-2.554;QD=6.12;ReadPosRankSum=0.713;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:74,33:107:99:685,0,2219
4    70275044    rs12512890    C    T    666.60    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=107;Dels=0.0;FS=4.467;HRun=2;HaplotypeScore=0.0;MQ=48.93;MQ0=1;MQRankSum=-3.589;QD=6.23;ReadPosRankSum=0.052;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:73,34:107:99:697,0,2310
4    70275092    rs12510018    G    A    90.38    MQFilter40;QDFilter2    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.257;DB;DP=89;Dels=0.0;FS=5.428;HRun=1;HaplotypeScore=0.0;MQ=36.64;MQ0=9;MQRankSum=-5.802;QD=1.02;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:64,25:89:99:120,0,1787
4    70275332    rs7435529    A    G    252.78    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=53.78;MQ0=0;MQRankSum=1.655;QD=12.04;ReadPosRankSum=-0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:11,10:21:99:283,0,385
4    70276504    rs62307183    G    C    803.94    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=54.14;MQ0=3;MQRankSum=-0.021;QD=12.0;ReadPosRankSum=-0.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:35,31:67:99:834,0,1075
4    70276664    rs62307184    C    T    3580.79    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=5.309;DB;DP=247;DS;Dels=0.0;FS=5.159;HRun=0;HaplotypeScore=0.734;MQ=56.1;MQ0=0;MQRankSum=0.837;QD=14.44;ReadPosRankSum=-1.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:129,118:247:99:3581,0,3757
4    70276753    rs4694728    G    A    2809.78    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.887;DB;DP=194;DS;Dels=0.0;FS=1.407;HRun=2;HaplotypeScore=3.4419;MQ=57.23;MQ0=0;MQRankSum=1.569;QD=14.48;ReadPosRankSum=0.999;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:94,100:194:99:2840,0,2846
4    70276910    rs193246495    G    T    157.96    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.24;MQ0=0;MQRankSum=0.248;QD=17.55;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508073    GT:AD:DP:GQ:PL    0/1:3,6:9:84.99:188,0,85
4    70283545    rs11249543    C    A    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.69;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:65,0,34
4    70283615    rs11249544    G    A    171.14    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.341;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.35;MQ0=0;MQRankSum=-3.752;QD=7.44;ReadPosRankSum=-0.961;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    0/1:13,10:23:99:201,0,458
4    70283908    rs2642841    T    A    1334.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.59;MQ0=0;QD=38.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1367,105,0
4    70284673    rs76778030    A    T    1837.72    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.743;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7232;MQ=42.55;MQ0=4;MQRankSum=-0.808;QD=12.67;ReadPosRankSum=-1.703;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    0/1:69,76:145:99:1868,0,1618
4    70284728    rs2642840    T    C    5228.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.91;MQ0=3;QD=30.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    1/1:0,168:169:99:5229,415,0
4    70284745    rs77192118    T    C    1557.12    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.395;DB;DP=178;Dels=0.0;FS=2.821;HRun=0;HaplotypeScore=6.243;MQ=44.59;MQ0=3;MQRankSum=-0.265;QD=8.75;ReadPosRankSum=-0.482;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    0/1:105,73:178:99:1587,0,2679
4    70284846    rs2736516    C    A    1690.27    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.351;DB;DP=142;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9646;MQ=41.38;MQ0=8;MQRankSum=-0.366;QD=11.9;ReadPosRankSum=-2.635;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    0/1:73,69:142:99:1720,0,1776
4    70284911    rs2642838    T    A    1017.89    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.217;DB;DP=90;Dels=0.0;FS=9.447;HRun=0;HaplotypeScore=0.0;MQ=48.93;MQ0=0;MQRankSum=0.097;QD=11.31;ReadPosRankSum=-0.088;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    0/1:51,39:90:99:1048,0,1627
4    70288522    rs77715947    A    G    525.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.308;DB;DP=42;Dels=0.0;FS=3.233;HRun=0;HaplotypeScore=0.0;MQ=49.78;MQ0=0;MQRankSum=0.075;QD=12.52;ReadPosRankSum=-0.604;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    0/1:21,21:42:99:556,0,715
4    70288596    rs79368121    G    A    3877.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=44.07;MQ0=0;QD=33.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    1/1:0,116:117:99:3878,316,0
4    70288829    rs149235693    G    T    216.75    MQFilter40;QDFilter2    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=4.042;DB;DP=147;Dels=0.0;FS=8.711;HRun=2;HaplotypeScore=0.7887;MQ=16.71;MQ0=89;MQRankSum=-1.101;QD=1.47;ReadPosRankSum=0.193;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    0/1:108,39:147:99:247,0,965
4    70288954    rs2736507    C    T    652.03    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=33.55;MQ0=4;MQRankSum=0.289;QD=23.29;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    1/1:1,27:28:24.92:685,25,0
4    70288981    rs2736505    C    T    750.55    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9638;MQ=38.96;MQ0=0;MQRankSum=-0.158;QD=34.12;ReadPosRankSum=1.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-790I12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514441    GT:AD:DP:GQ:PL    1/1:1,21:22:34.65:784,35,0
4    70346711    rs28679647    G    C    765.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=57.32;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502655    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:799,63,0
4    70351402    rs9997034    A    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503836    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
4    70351432    rs10030234    C    T    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503836    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
4    70355211    rs1845555    T    C    5817.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.74;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=T180;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70355157_70355288;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381096    GT:AD:DP:GQ:PL    1/1:1,173:175:99:5818,445,0
4    70355380    rs28542932    T    A    1511.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305107    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1544,117,0
4    70359694    rs7441743    G    A    36.56    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.66;MQ0=0;MQRankSum=0.0;QD=2.61;ReadPosRankSum=0.623;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510114    GT:AD:DP:GQ:PL    0/1:11,3:14:66.55:67,0,400
4    70455478    rs2288741    G    T    555.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286604    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:588,45,0
4    70465153    rs3775782    A    T    1072.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.337;QD=30.64;ReadPosRankSum=0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286604    GT:AD:DP:GQ:PL    1/1:1,34:35:46.98:1105,47,0
4    70512773    rs41292307    A    G    1310.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DB;DP=40;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.466;QD=32.76;ReadPosRankSum=0.844;SNPEFF_AMINO_ACID_CHANGE=L197S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70512648_70513416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286604    GT:AD:DP:GQ:PL    1/1:1,39:40:70.69:1343,71,0
4    70512801    rs55864295    A    G    1416.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_AMINO_ACID_CHANGE=Y188H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70512648_70513416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286604    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1450,111,0
4    70513139    rs1347046    C    T    1481.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=R75K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70512648_70513416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286604    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1514,120,0
4    70592790    rs2292092    G    T    225.77    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.671;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=7.06;ReadPosRankSum=-0.503;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310613    GT:AD:DP:GQ:PL    0/1:23,9:32:99:256,0,717
4    70599073    rs1847366    C    T    1330.91    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.113;DB;DP=95;Dels=0.0;FS=1.07;HRun=0;HaplotypeScore=0.5784;MQ=59.76;MQ0=0;MQRankSum=1.068;QD=14.01;ReadPosRankSum=-0.064;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510821    GT:AD:DP:GQ:PL    0/1:53,42:95:99:1361,0,1774
4    70615621    rs4149413    C    T    142.66    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=10.97;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512870    GT:AD:DP:GQ:PL    0/1:6,7:13:99:173,0,204
4    70620708    rs2134668    G    A    611.16    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.549;DB;DP=48;Dels=0.0;FS=1.361;HRun=0;HaplotypeScore=6.9315;MQ=59.52;MQ0=0;MQRankSum=3.155;QD=12.73;ReadPosRankSum=-1.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310613    GT:AD:DP:GQ:PL    0/1:26,22:48:99:641,0,906
4    70723444    rs4149530    C    G    338.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.837;DB;DP=28;Dels=0.0;FS=6.198;HRun=3;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.161;QD=12.1;ReadPosRankSum=-0.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SULT1E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226444    GT:AD:DP:GQ:PL    0/1:14,14:28:99:369,0,388
4    70798436    rs2306995    A    G    108.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.1;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246891    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,173
4    70803380    rs1220860    T    A    70.88    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=13;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=5.45;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246891    GT:AD:DP:GQ:PL    0/1:9,4:13:99:101,0,319
4    70824747    rs140392964    T    C    548.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.372;DB;DP=38;Dels=0.0;FS=12.671;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=14.44;ReadPosRankSum=-0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353151    GT:AD:DP:GQ:PL    0/1:19,19:38:99:579,0,614
4    70824865    rs776857    A    C    293.67    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.74;QD=24.47;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353151    GT:AD:DP:GQ:PL    0/1:3,9:12:81.94:324,0,82
4    70825933    rs2673720    A    G    77.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.86;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353151    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,106
4    70864065    rs3775764    G    A    558.81    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=3.133;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=24.3;ReadPosRankSum=0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STATH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246895    GT:AD:DP:GQ:PL    0/1:6,17:23:99:589,0,148
4    70896355    rs13123938    A    G    282.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=14.15;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381057    GT:AD:DP:GQ:PL    0/1:8,12:20:99:313,0,282
4    70898907    rs1849937    C    T    535.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=34;Dels=0.0;FS=5.188;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-1.033;QD=15.76;ReadPosRankSum=0.896;SNPEFF_AMINO_ACID_CHANGE=G32;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_70898884_70898970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381057    GT:AD:DP:GQ:PL    0/1:17,17:34:99:566,0,531
4    70898953    rs1136515    C    T    433.38    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=4.02;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.018;QD=12.38;ReadPosRankSum=0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528003    GT:AD:DP:GQ:PL    0/1:18,16:35:99:463,0,456
4    70899037    rs776852    T    A    288.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528003    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:321,27,0
4    70919814    .    T    G    54    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
4    70921069    rs6818370    G    T    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246896    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,110
4    70921164    rs2271643    T    C    936.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246896    GT:AD:DP:GQ:PL    1/1:0,29:29:69.23:969,69,0
4    70921337    rs2271644    G    A    710.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246896    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:744,57,0
4    71020205    rs1709273    C    G    167.30    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=17;Dels=0.0;FS=3.01;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=9.84;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C4orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344526    GT:AD:DP:GQ:PL    0/1:10,7:17:99:197,0,315
4    71020264    rs72856517    T    C    130.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.31;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C4orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344526    GT:AD:DP:GQ:PL    0/1:3,5:8:99:160,0,101
4    71021888    rs1709274    C    T    353.13    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5782;MQ=60.0;MQ0=0;MQRankSum=1.197;QD=18.59;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C4orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344526    GT:AD:DP:GQ:PL    0/1:8,11:19:99:383,0,276
4    71024010    rs111347259    T    TACAA    3849.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=153.5789;IndelType=I;MQ=57.29;MQ0=0;QD=76.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C4orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344526    GT:AD:DP:GQ:PL    1/1:3,46:50:99:3849,151,0
4    71027213    rs62305548    G    T    91.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=7.65;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C4orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502441    GT:AD:DP:GQ:PL    0/1:8,4:12:99:122,0,292
4    71062256    rs3756132    C    T    727.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.07;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_71062213_71062311;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396094    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:761,54,0
4    71062342    rs3756131    C    T    1550.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=38.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396094    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1583,117,0
4    71062426    rs17704351    C    T    1651.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=30.02;SNPEFF_AMINO_ACID_CHANGE=L23;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71062409_71062450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396094    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1684,123,0
4    71063964    rs2306445    G    A    704.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396094    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:737,57,0
4    71067010    rs62307377    T    C    77.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506248    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:110,9,0
4    71067317    rs4694273    C    A    217.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506248    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:250,18,0
4    71068358    rs3841634    C    CT    248.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=7;HaplotypeScore=14.7893;IndelType=I;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506248    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:290,24,0
4    71068489    rs3196714    T    C    1198.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=I159T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71068473_71068634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000514097    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1231,93,0
4    71110488    rs41292331    C    T    511.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:544,39,0
4    71110505    rs140888032    AT    A    589.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=9;HaplotypeScore=111.7641;IndelType=D;MQ=60.93;MQ0=0;QD=25.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,23:23:69.04:632,69,0
4    71110639    rs13103289    G    A    1609.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1642,120,0
4    71110680    rs41292333    G    A    1182.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,32:33:96.28:1215,96,0
4    71110747    rs41292335    T    C    205.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
4    71110753    rs41292337    G    A    201.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
4    71113633    rs10518071    T    C    887.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:920,75,0
4    71114534    rs3775743    C    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    71114676    rs3836687    TATA    T    867.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=134.9384;IndelType=D;MQ=35.42;MQ0=0;QD=43.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:2,18:20:60.20:909,60,0
4    71114702    rs57550378    A    AT    897.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DB;DP=30;FS=0.0;HRun=8;HaplotypeScore=156.4987;IndelType=I;MQ=45.61;MQ0=0;MQRankSum=-1.494;QD=29.92;ReadPosRankSum=0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:2,28:30:59.79:940,60,0
4    71115060    rs3775739    G    A    1195.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.963;MQ=60.0;MQ0=0;QD=24.9;SNPEFF_AMINO_ACID_CHANGE=A145T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71114715_71115210;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,44:48:99:1228,99,0
4    71115152    rs3775738    T    C    1139.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=V175;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71114715_71115210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,36:36:93.28:1172,93,0
4    71115332    rs3822164    G    A    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304954    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
4    71201388    rs1351419    C    T    1214.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=37;Dels=0.0;FS=3.802;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.251;QD=32.84;ReadPosRankSum=1.251;SNPEFF_AMINO_ACID_CHANGE=T211I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71200698_71202063;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273936    GT:AD:DP:GQ:PL    1/1:1,36:37:93.23:1248,93,0
4    71201648    rs2291182    T    G    830.38    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.173;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.66;MQ0=0;MQRankSum=-1.223;QD=12.21;ReadPosRankSum=0.508;SNPEFF_AMINO_ACID_CHANGE=W298G;SNPEFF_CODON_CHANGE=Tgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71200698_71202063;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273936    GT:AD:DP:GQ:PL    0/1:33,35:68:99:860,0,1071
4    71201943    rs13039    A    G    539.52    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.43;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.694;QD=13.83;ReadPosRankSum=0.411;SNPEFF_AMINO_ACID_CHANGE=*396;SNPEFF_CODON_CHANGE=tAa/tGa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_4_71200698_71202063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000273936    GT:AD:DP:GQ:PL    0/1:17,22:39:99:570,0,563
4    71227646    rs62322477    G    A    113.61    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.55;MQ0=0;MQRankSum=-0.731;QD=22.72;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226460    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:144,0,25
4    71227877    rs62322478    G    A    942.40    MQFilter40    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.211;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.57;MQ0=21;MQRankSum=1.225;QD=9.92;ReadPosRankSum=-1.258;SNPEFF_AMINO_ACID_CHANGE=A15;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71227819_71227886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226460    GT:AD:DP:GQ:PL    0/1:60,35:95:99:972,0,1034
4    71228001    rs1842476    G    A    759.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.55;MQ0=0;QD=37.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226460    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:793,60,0
4    71228024    rs17148798    G    C    176.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.68;MQ0=0;MQRankSum=-1.073;QD=14.74;ReadPosRankSum=-2.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226460    GT:AD:DP:GQ:PL    0/1:6,6:12:99:207,0,213
4    71232430    rs10024123    T    C    3471.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1428;MQ=58.68;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=C42R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71232361_71232875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226460    GT:AD:DP:GQ:PL    1/1:0,105:106:99:3471,268,0
4    71232701    rs6853742    C    T    2110.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=30.59;SNPEFF_AMINO_ACID_CHANGE=P132L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71232361_71232875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226460    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2144,163,0
4    71250308    rs2233586    T    A    607.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.56;MQ0=8;QD=17.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304915    GT:AD:DP:GQ:PL    1/1:0,34:34:54.14:641,54,0
4    71250399    rs7676909    A    G    570.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.98;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304915    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:603,45,0
4    71255370    rs7674958    A    T    1838.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=34.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508027    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1872,144,0
4    71255593    rs2988    G    A    3605.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508027    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3606,274,0
4    71255767    rs3733493    A    G    4008.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.83;MQ0=0;QD=36.44;SNPEFF_AMINO_ACID_CHANGE=Y92C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71255676_71255816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMR3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381030    GT:AD:DP:GQ:PL    1/1:0,110:110:99:4008,295,0
4    71265172    rs1844635    A    C    217.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.898;QD=21.74;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399575    GT:AD:DP:GQ:PL    0/1:2,8:10:55.91:247,0,56
4    71275012    rs1352689    T    C    454.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399575    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:488,36,0
4    71275387    rs61336549    A    G    1804.07    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.866;DB;DP=140;Dels=0.0;FS=2.125;HRun=2;HaplotypeScore=1.6671;MQ=59.84;MQ0=0;MQRankSum=-1.485;QD=12.89;ReadPosRankSum=-1.902;SNPEFF_AMINO_ACID_CHANGE=V114;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71275097_71275911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399575    GT:AD:DP:GQ:PL    0/1:72,68:140:99:1834,0,2184
4    71346701    rs6826961    C    G    826.81    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.052;DB;DP=81;Dels=0.0;FS=6.317;HRun=0;HaplotypeScore=0.9973;MQ=59.72;MQ0=0;MQRankSum=-0.85;QD=10.21;ReadPosRankSum=-0.223;SNPEFF_AMINO_ACID_CHANGE=N80K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71346516_71348714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304887    GT:AD:DP:GQ:PL    0/1:48,33:81:99:857,0,1447
4    71384488    rs28674149    C    T    1642.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.71;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_4_71384480_71384548;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1676,123,0
4    71384579    rs35692424    G    A    479.66    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.22;DB;DP=42;Dels=0.0;FS=9.205;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.468;QD=11.42;ReadPosRankSum=0.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    0/1:25,17:42:99:510,0,773
4    71388379    rs28754427    A    T    1187.96    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.681;DB;DP=85;Dels=0.0;FS=6.398;HRun=0;HaplotypeScore=1.9787;MQ=59.73;MQ0=0;MQRankSum=-2.073;QD=13.98;ReadPosRankSum=-0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1218,0,1510
4    71388394    rs4123809    T    G    1463.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.18;DB;DP=112;Dels=0.0;FS=7.921;HRun=2;HaplotypeScore=3.5493;MQ=59.79;MQ0=0;MQRankSum=0.259;QD=13.07;ReadPosRankSum=-1.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    0/1:56,56:112:99:1494,0,1798
4    71388551    rs7660807    A    G    3147.97    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=200;DS;Dels=0.0;FS=2.086;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.448;QD=15.74;ReadPosRankSum=-1.581;SNPEFF_AMINO_ACID_CHANGE=N44S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71388475_71388555;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504451    GT:AD:DP:GQ:PL    0/1:92,108:200:99:3178,0,2944
4    71389346    rs28444783    C    G    73.46    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.37;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:103,0,29
4    71390795    rs17733287    C    A    33.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.77;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    0/1:5,2:7:63.40:63,0,154
4    71394665    rs28485286    A    G    36.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.22;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:67,0,33
4    71396989    rs17676820    C    T    540.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.591;QD=20.02;ReadPosRankSum=0.026;SNPEFF_AMINO_ACID_CHANGE=I196;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71396756_71397017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504451    GT:AD:DP:GQ:PL    0/1:9,18:27:99:571,0,243
4    71397942    rs3864159    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
4    71397957    rs3864160    C    T    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
4    71398064    rs3852099    G    A    217.66    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=18.14;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339336    GT:AD:DP:GQ:PL    0/1:5,7:12:99:248,0,175
4    71458285    rs28710288    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322937    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    71466914    rs4694075    C    T    187.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=23.42;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322937    GT:AD:DP:GQ:PL    0/1:2,6:8:54.28:217,0,54
4    71467443    rs71599963    A    G    470.85    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.752;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=17.44;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322937    GT:AD:DP:GQ:PL    0/1:11,16:27:99:501,0,327
4    71468249    rs35870385    A    T    498.27    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.17;MQ0=0;MQRankSum=-1.193;QD=19.93;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322937    GT:AD:DP:GQ:PL    0/1:10,15:25:99:528,0,334
4    71468396    rs35859385    A    G    775.60    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=54;Dels=0.0;FS=2.386;HRun=0;HaplotypeScore=1.7845;MQ=59.12;MQ0=0;MQRankSum=-0.528;QD=14.36;ReadPosRankSum=-1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322937    GT:AD:DP:GQ:PL    0/1:28,26:54:99:806,0,947
4    71468444    rs66513880    TTTA    T    821.59    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=5.396;DB;DP=43;FS=4.677;HRun=0;HaplotypeScore=221.0893;IndelType=D;MQ=57.37;MQ0=0;MQRankSum=0.23;QD=19.11;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322937    GT:AD:DP:GQ:PL    0/1:23,20:43:99:861,0,1064
4    71468611    rs34230455    C    T    886.49    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.172;DB;DP=54;Dels=0.0;FS=1.053;HRun=3;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=-0.052;QD=16.42;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322937    GT:AD:DP:GQ:PL    0/1:23,31:54:99:916,0,758
4    71468922    rs35850072    C    T    519.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.137;DB;DP=25;Dels=0.0;FS=1.76;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.361;QD=20.8;ReadPosRankSum=2.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322937    GT:AD:DP:GQ:PL    0/1:10,15:25:99:550,0,320
4    71468985    rs35266919    A    G    479.58    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.477;DB;DP=44;Dels=0.0;FS=6.807;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=-0.452;QD=10.9;ReadPosRankSum=0.061;SNPEFF_AMINO_ACID_CHANGE=Q204;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71468977_71469036;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449493    GT:AD:DP:GQ:PL    0/1:25,19:44:99:510,0,744
4    71689771    rs28460089    G    T    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:84,6,0
4    71689783    rs28526268    G    T    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:76,6,0
4    71690221    rs13108088    A    G    199.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:232,18,0
4    71690828    rs7661039    A    G    164.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:197,18,0
4    71691743    rs6814981    C    T    1471.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=38.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1504,114,0
4    71692174    rs6849893    G    C    164.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:197,15,0
4    71697510    rs4694080    T    C    1060.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,33:33:96.24:1094,96,0
4    71697864    rs1477883    T    C    433.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:466,33,0
4    71698183    rs4694081    C    A    2242.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2276,177,0
4    71705262    rs6813092    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_AMINO_ACID_CHANGE=S95P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_71705188_71705662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRSF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254799    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    71768079    rs1871048    C    G    360.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=22;Dels=0.0;FS=11.461;HRun=0;HaplotypeScore=2.6102;MQ=54.06;MQ0=0;MQRankSum=0.199;QD=16.41;ReadPosRankSum=2.059;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509041    GT:AD:DP:GQ:PL    1/1:4,18:22:36.96:394,37,0
4    71864013    rs6446988    A    G    194.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509617    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:227,18,0
4    71864079    rs1580469    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509617    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
4    71888330    rs68172719    G    A    48.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=15;Dels=0.0;FS=5.119;HRun=1;HaplotypeScore=4.3743;MQ=58.45;MQ0=0;MQRankSum=-0.386;QD=3.26;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511449    GT:AD:DP:GQ:PL    0/1:10,5:15:78.92:79,0,279
4    71892135    rs936868    T    C    92.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=23.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511449    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
4    71892513    rs1486271    A    T    420.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.55;MQ0=0;QD=26.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511449    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:453,36,0
4    71894941    rs77592672    A    G    187.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=20.81;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509764    GT:AD:DP:GQ:PL    0/1:3,6:9:97.10:217,0,97
4    71895260    rs4643786    C    T    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509764    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
4    72120673    rs28499237    A    G    91.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
4    72121364    rs79444521    T    C    84.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    72316822    rs10022349    C    T    199.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
4    72332481    rs34834503    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
4    72397710    rs3775162    C    T    329.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:362,27,0
4    72397964    rs10446504    T    C    381.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:415,36,0
4    72399713    rs1453450    A    C    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
4    72400242    rs12696756    G    T    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
4    72411967    rs4694097    A    G    543.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:576,48,0
4    72413281    rs2278893    T    C    144.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=14.48;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,179
4    72423624    rs1453474    C    T    777.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:810,60,0
4    72425863    rs1453458    C    T    4009.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.8;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=H913;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_72425810_72425971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351898    GT:AD:DP:GQ:PL    1/1:0,115:115:99:4009,295,0
4    72426133    rs142830766    C    CTCTT    1484.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=55.9424;IndelType=I;MQ=54.24;MQ0=0;QD=78.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,17:19:57.20:1526,57,0
4    72429288    rs6841132    A    C    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
4    72429371    rs2290399    G    A    331.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:365,30,0
4    72429409    rs2290398    A    G    812.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:845,66,0
4    72429433    rs6812916    G    A    630.13    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=4.614;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=58.9;MQ0=0;MQRankSum=-0.874;QD=16.58;ReadPosRankSum=-0.874;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    0/1:17,21:38:99:660,0,467
4    72429452    rs2290397    G    A    2057.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264485    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2090,157,0
4    72433545    rs1062677    A    C    125.48    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=15.68;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=I1074L;SNPEFF_CODON_CHANGE=Ata/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_72433505_72437804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425175    GT:AD:DP:GQ:PL    0/1:2,6:8:66.82:155,0,67
4    72618296    rs9016    T    C    1864.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.63;MQ0=0;QD=29.6;SNPEFF_AMINO_ACID_CHANGE=H445R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_72618235_72618367;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273951    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1898,150,0
4    72618334    rs7041    A    C    827.55    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=68;Dels=0.0;FS=2.03;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.409;QD=12.17;ReadPosRankSum=-0.082;SNPEFF_AMINO_ACID_CHANGE=D432E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_72618235_72618367;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273951    GT:AD:DP:GQ:PL    0/1:36,32:68:99:858,0,1074
4    72622403    rs222033    A    C    511.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273951    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:544,42,0
4    72629279    rs62302165    T    C    188.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.792;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=13.46;ReadPosRankSum=-1.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505234    GT:AD:DP:GQ:PL    0/1:7,7:14:99:218,0,227
4    72634975    rs222016    G    A    296.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273951    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:330,24,0
4    72934539    rs9884712    A    C    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPFFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308744    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
4    72934578    rs11444220    C    CT    316.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=6;HaplotypeScore=105.2653;IndelType=I;MQ=44.1;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPFFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308744    GT:AD:DP:GQ:PL    1/1:2,8:10:30.05:359,30,0
4    72934632    rs9884478    C    T    770.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPFFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308744    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:803,63,0
4    72934968    rs11733448    T    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPFFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308744    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    73175048    rs12501859    G    A    225.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.266;QD=11.3;ReadPosRankSum=0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    0/1:10,10:20:99:256,0,290
4    73175093    rs10024487    C    T    1225.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    1/1:0,39:39:93.30:1259,93,0
4    73176606    rs6446827    C    T    71.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.16;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,129
4    73185863    rs2304363    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    73280802    rs919981    T    C    191.91    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.533;QD=14.76;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    0/1:5,8:13:99:222,0,175
4    73414032    rs11946759    T    C    75.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.51;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,101
4    73414286    rs788908    C    T    2377.47    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=0.719;DB;DP=150;Dels=0.0;FS=2.103;HRun=2;HaplotypeScore=2.8632;MQ=59.72;MQ0=0;MQRankSum=-0.873;QD=15.85;ReadPosRankSum=-0.261;SNPEFF_AMINO_ACID_CHANGE=R138K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_73414195_73414601;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    0/1:66,83:150:99:2407,0,1923
4    73414730    rs61317550    A    G    68.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=17.1;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:98,0,29
4    73433122    rs35811736    GA    G    275.91    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=19;FS=0.0;HRun=3;HaplotypeScore=47.2347;IndelType=D;MQ=60.57;MQ0=0;MQRankSum=-1.266;QD=14.52;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    0/1:9,10:19:99:315,0,327
4    73433315    rs6830556    G    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    73434379    rs5859330    GT    G    479.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=52.9696;IndelType=D;MQ=60.51;MQ0=0;QD=22.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286657    GT:AD:DP:GQ:PL    1/1:2,19:21:57.03:522,57,0
4    73615956    rs1350836    C    T    777.74    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.428;DB;DP=73;Dels=0.0;FS=3.289;HRun=0;HaplotypeScore=0.9332;MQ=59.68;MQ0=0;MQRankSum=-0.205;QD=10.65;ReadPosRankSum=1.987;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:47,26:73:99:808,0,1410
4    73673070    rs1381252    A    C    267.73    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.615;DB;DP=22;Dels=0.0;FS=1.897;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;MQRankSum=0.956;QD=12.17;ReadPosRankSum=0.429;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-53C16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507243    GT:AD:DP:GQ:PL    0/1:10,12:22:99:298,0,292
4    73673596    rs2614328    T    A    816.87    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.933;DB;DP=41;Dels=0.0;FS=1.603;HRun=0;HaplotypeScore=0.9993;MQ=59.11;MQ0=0;MQRankSum=0.447;QD=19.92;ReadPosRankSum=0.084;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-53C16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507243    GT:AD:DP:GQ:PL    0/1:16,25:41:99:847,0,491
4    73930893    rs2126115    T    G    61.61    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=10.8861;MQ=35.14;MQ0=0;MQRankSum=-0.71;QD=4.4;ReadPosRankSum=-1.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421792    GT:AD:DP:GQ:PL    1/1:8,6:14:9.02:94,9,0
4    73931170    rs2306057    T    C    313.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.659;DB;DP=28;Dels=0.0;FS=2.551;HRun=0;HaplotypeScore=0.9159;MQ=58.33;MQ0=0;MQRankSum=0.366;QD=11.2;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421792    GT:AD:DP:GQ:PL    0/1:16,12:28:99:344,0,477
4    73950717    rs4631009    G    A    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.79;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330838    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,104
4    73991006    rs6822576    T    C    1710.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD17;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000426990    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1743,135,0
4    74123838    rs72663032    A    C    104.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.748;MQ=57.39;MQ0=0;MQRankSum=0.684;QD=11.65;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330838    GT:AD:DP:GQ:PL    0/1:3,6:9:97.20:135,0,97
4    74123886    rs192995198    A    G    456.43    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.346;QD=19.84;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330838    GT:AD:DP:GQ:PL    0/1:9,14:23:99:486,0,268
4    74275821    rs3775485    A    T    121.95    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.39;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441319    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:152,0,26
4    74285239    rs962004    C    T    705.58    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.67;QD=12.83;ReadPosRankSum=1.21;SNPEFF_AMINO_ACID_CHANGE=L343;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_74285224_74285356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329326    GT:AD:DP:GQ:PL    0/1:30,25:55:99:736,0,1014
4    74285552    rs4076    A    G    187.68    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=23.46;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484992    GT:AD:DP:GQ:PL    0/1:2,6:8:57.16:218,0,57
4    74285567    rs962005    C    A    112.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.09;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484992    GT:AD:DP:GQ:PL    0/1:3,4:7:99:143,0,105
4    74285758    rs2236766    G    T    781.92    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.097;DB;DP=48;Dels=0.0;FS=1.343;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.29;QD=16.29;ReadPosRankSum=1.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484992    GT:AD:DP:GQ:PL    0/1:20,28:48:99:812,0,621
4    74285823    rs2236767    G    A    1062.03    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.488;DB;DP=83;Dels=0.0;FS=1.865;HRun=0;HaplotypeScore=2.2282;MQ=59.67;MQ0=0;MQRankSum=0.869;QD=12.8;ReadPosRankSum=0.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484992    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1092,0,1308
4    74302071    rs3796678    T    A    801.72    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=4.46;DB;DP=46;Dels=0.0;FS=5.497;HRun=1;HaplotypeScore=2.6102;MQ=59.5;MQ0=0;MQRankSum=0.751;QD=17.43;ReadPosRankSum=0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226359    GT:AD:DP:GQ:PL    0/1:17,29:46:99:832,0,510
4    74302151    rs3796677    A    T    159.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=14.5;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226359    GT:AD:DP:GQ:PL    0/1:5,6:11:99:189,0,172
4    74302800    rs41265655    A    C    96.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=8.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226359    GT:AD:DP:GQ:PL    0/1:8,4:12:99:126,0,304
4    74302870    rs16849384    T    C    310.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.391;DB;DP=29;Dels=0.0;FS=14.094;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.255;QD=10.71;ReadPosRankSum=-0.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226359    GT:AD:DP:GQ:PL    0/1:16,12:29:99:341,0,526
4    74304118    rs6446932    T    A    212.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513720    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
4    74306671    rs6857080    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513720    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    74308206    rs184090053    C    T    279.34    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-1.548;QD=8.73;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226359    GT:AD:DP:GQ:PL    0/1:20,11:32:99:309,0,651
4    74310844    rs2298839    A    G    666.57    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.769;DB;DP=52;Dels=0.0;FS=8.824;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.361;QD=12.82;ReadPosRankSum=-1.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226359    GT:AD:DP:GQ:PL    0/1:30,22:52:99:697,0,997
4    74313169    rs7667494    T    C    893.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226359    GT:AD:DP:GQ:PL    1/1:0,29:29:75.17:926,75,0
4    74318330    rs4235117    A    G    1055.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=T547;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_74318118_74318341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AFP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226359    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1089,81,0
4    74349867    rs11939341    A    G    874.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226355    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:908,66,0
4    74350157    rs71983440    CTCTT    C    169.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=132.6894;IndelType=D;MQ=56.5;MQ0=0;MQRankSum=-0.742;QD=6.51;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226355    GT:AD:DP:GQ:PL    1/1:21,5:26:13.10:211,13,0
4    74350216    .    T    A    35.61    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.56;MQ0=0;MQRankSum=0.546;QD=3.56;ReadPosRankSum=-2.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226355    GT:AD:DP:GQ:PL    0/1:7,3:10:65.60:66,0,110
4    74357851    rs11733262    A    G    686.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226355    GT:AD:DP:GQ:PL    1/1:0,21:21:54.13:719,54,0
4    74361254    rs10212657    T    C    250.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226355    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
4    74442667    rs1247663    G    A    144.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307439    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:177,15,0
4    74447417    rs1247669    C    G    49.08    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.217;QD=3.27;ReadPosRankSum=0.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307439    GT:AD:DP:GQ:PL    0/1:12,3:15:79.07:79,0,453
4    74447452    rs1247670    C    T    686.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307439    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:720,54,0
4    74447492    rs2272427    G    A    275.74    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.248;DB;DP=26;Dels=0.0;FS=1.706;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.194;QD=10.61;ReadPosRankSum=2.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307439    GT:AD:DP:GQ:PL    0/1:16,10:26:99:306,0,408
4    74447510    rs1247671    A    C    877.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307439    GT:AD:DP:GQ:PL    1/1:0,30:30:69.22:910,69,0
4    74453782    rs10009048    A    G    37.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.32;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307439    GT:AD:DP:GQ:PL    0/1:3,3:6:67.94:68,0,103
4    74719729    rs2233654    G    A    208.35    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=3.196;DB;DP=47;Dels=0.0;FS=15.303;HRun=0;HaplotypeScore=0.0;MQ=56.3;MQ0=0;MQRankSum=-2.049;QD=4.43;ReadPosRankSum=-0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503446    GT:AD:DP:GQ:PL    0/1:34,13:47:99:238,0,1001
4    74719891    .    G    T    219.92    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=54.67;MQ0=0;MQRankSum=-1.134;QD=16.92;ReadPosRankSum=-0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PF4V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226524    GT:AD:DP:GQ:PL    0/1:4,9:13:99:250,0,139
4    74719925    rs11723868    G    A    285.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.69;MQ0=0;QD=31.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PF4V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226524    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
4    74736144    rs4074    A    G    218.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.733;QD=10.9;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CXCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509101    GT:AD:DP:GQ:PL    0/1:12,8:20:99:248,0,430
4    74736180    rs56078309    G    A    386.96    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=25;Dels=0.0;FS=1.77;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=15.48;ReadPosRankSum=1.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CXCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509101    GT:AD:DP:GQ:PL    0/1:10,14:25:99:417,0,290
4    74804846    rs1821623    C    G    1804.27    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=121;Dels=0.0;FS=1.489;HRun=0;HaplotypeScore=2.6207;MQ=59.25;MQ0=0;MQRankSum=-0.813;QD=14.91;ReadPosRankSum=-1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-88J6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502804    GT:AD:DP:GQ:PL    0/1:55,64:121:99:1834,0,1781
4    74804923    rs6446970    G    T    1365.11    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=88;Dels=0.0;FS=1.971;HRun=1;HaplotypeScore=0.6651;MQ=58.77;MQ0=0;MQRankSum=1.663;QD=15.51;ReadPosRankSum=0.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-88J6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502804    GT:AD:DP:GQ:PL    0/1:40,48:88:99:1395,0,1201
4    74847292    rs352007    G    C    211.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296029    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:245,21,0
4    74863997    rs425535    T    C    1652.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=Q56;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_74863923_74864055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296027    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1685,135,0
4    74864550    rs352046    G    C    396.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296027    GT:AD:DP:GQ:PL    1/1:0,16:16:39.07:429,39,0
4    74864687    rs352045    T    G    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296027    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
4    74903134    rs370655    T    C    80.44    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=6.19;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510390    GT:AD:DP:GQ:PL    0/1:8,5:13:99:110,0,288
4    75040944    rs13116686    T    G    3553.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTHFD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325278    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3553,262,0
4    75041363    rs479496    T    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTHFD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325278    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
4    75046310    rs4694183    A    C    623.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTHFD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325278    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:656,48,0
4    75046372    rs561583    A    G    1130.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTHFD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325278    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1164,90,0
4    75046465    rs561844    C    G    1330.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTHFD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325278    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1364,99,0
4    75245343    rs7660209    T    A    154.26    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.9;DB;DP=26;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=5.93;ReadPosRankSum=-1.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EREG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244869    GT:AD:DP:GQ:PL    0/1:14,12:26:99:184,0,496
4    75246617    rs4694187    A    T    296.02    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.755;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=15.58;ReadPosRankSum=1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EREG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244869    GT:AD:DP:GQ:PL    0/1:9,10:19:99:326,0,305
4    75248434    rs2367707    A    G    703.99    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.465;DB;DP=72;Dels=0.0;FS=3.406;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.441;QD=9.78;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=E117;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_75248362_75248511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EREG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244869    GT:AD:DP:GQ:PL    0/1:43,29:72:99:734,0,1418
4    75248544    rs2367708    C    T    614.62    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.82;DB;DP=56;Dels=0.0;FS=16.706;HRun=0;HaplotypeScore=1.7803;MQ=59.67;MQ0=0;MQRankSum=0.21;QD=10.98;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EREG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507603    GT:AD:DP:GQ:PL    0/1:34,22:56:99:645,0,1134
4    75248685    rs2367709    G    A    110.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.5;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EREG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507603    GT:AD:DP:GQ:PL    0/1:2,4:6:57.53:141,0,58
4    75316206    .    A    C    82.04    MQFilter40;QDFilter2    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.541;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=11.21;MQ0=58;MQRankSum=0.639;QD=0.94;ReadPosRankSum=1.328;SNPEFF_AMINO_ACID_CHANGE=M208L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_75316097_75316249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AREG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264487    GT:AD:DP:GQ:PL    0/1:49,38:87:99:112,0,219
4    75673363    rs4585380    G    A    799.49    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.341;DB;DP=48;Dels=0.0;FS=3.739;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.908;QD=16.66;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395743    GT:AD:DP:GQ:PL    0/1:23,25:48:99:829,0,705
4    75673455    rs7699847    T    A    158.56    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.083;QD=12.2;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395743    GT:AD:DP:GQ:PL    0/1:4,9:13:99:189,0,129
4    75675667    rs7673066    A    G    227.88    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.109;QD=10.85;ReadPosRankSum=0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395743    GT:AD:DP:GQ:PL    0/1:13,8:21:99:258,0,456
4    75675706    rs35926103    A    G    433.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.283;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.283;QD=12.38;ReadPosRankSum=0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395743    GT:AD:DP:GQ:PL    0/1:20,15:35:99:463,0,719
4    75675841    rs11938093    A    T    2516.49    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.182;DB;DP=159;Dels=0.0;FS=8.576;HRun=0;HaplotypeScore=1.399;MQ=59.7;MQ0=0;MQRankSum=-2.209;QD=15.83;ReadPosRankSum=1.306;SNPEFF_AMINO_ACID_CHANGE=L124M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_75675783_75675929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395743    GT:AD:DP:GQ:PL    0/1:74,84:159:99:2546,0,2313
4    75937971    rs3822109    C    T    2199.41    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=1.636;DB;DP=130;Dels=0.0;FS=0.657;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.698;QD=16.92;ReadPosRankSum=0.798;SNPEFF_AMINO_ACID_CHANGE=S127L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_75937635_75938360;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307428    GT:AD:DP:GQ:PL    0/1:58,72:130:99:2229,0,1750
4    75938179    rs3775527    G    A    2386.82    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=0.656;DB;DP=173;Dels=0.0;FS=2.118;HRun=1;HaplotypeScore=0.9867;MQ=58.98;MQ0=0;MQRankSum=0.841;QD=13.8;ReadPosRankSum=-0.426;SNPEFF_AMINO_ACID_CHANGE=P196;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_75937635_75938360;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307428    GT:AD:DP:GQ:PL    0/1:96,77:173:99:2417,0,2741
4    75938236    rs1062293    A    G    1863.11    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=7.62;DB;DP=120;Dels=0.0;FS=6.936;HRun=0;HaplotypeScore=3.7748;MQ=58.84;MQ0=0;MQRankSum=2.382;QD=15.53;ReadPosRankSum=0.483;SNPEFF_AMINO_ACID_CHANGE=V215;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_75937635_75938360;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307428    GT:AD:DP:GQ:PL    0/1:64,56:120:99:1893,0,1818
4    75938373    rs919052    C    G    920.37    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.769;DB;DP=73;Dels=0.0;FS=10.827;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.554;QD=12.61;ReadPosRankSum=-0.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307428    GT:AD:DP:GQ:PL    0/1:40,33:73:99:950,0,1246
4    76415693    .    G    GTA    283.41    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DP=15;FS=7.83;HRun=0;HaplotypeScore=69.5219;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=1.625;QD=18.89;ReadPosRankSum=0.225;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCHY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505514    GT:AD:DP:GQ:PL    0/1:7,7:15:99:322,0,187
4    76415985    rs6833496    G    A    431.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCHY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513083    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:464,36,0
4    76416779    rs2045863    G    A    605.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCHY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513083    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:639,51,0
4    76434352    rs2306177    T    A    515.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.486;DB;DP=31;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=1.6208;MQ=59.25;MQ0=0;MQRankSum=-0.066;QD=16.64;ReadPosRankSum=-0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCHY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324439    GT:AD:DP:GQ:PL    0/1:10,20:31:99:546,0,302
4    76446921    rs34598763    G    GATT    2369.31    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.896;DB;DP=106;FS=5.302;HRun=0;HaplotypeScore=386.3047;IndelType=I;MQ=58.25;MQ0=0;MQRankSum=-0.382;QD=22.35;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504218    GT:AD:DP:GQ:PL    0/1:63,41:106:99:2408,0,1925
4    76521256    rs115887503    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506234    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
4    76528896    rs35686740    C    CA    126.04    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=21;FS=0.0;HRun=16;HaplotypeScore=212.5612;IndelType=I;MQ=40.76;MQ0=0;MQRankSum=-1.02;QD=6.0;ReadPosRankSum=-1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307465    GT:AD:DP:GQ:PL    0/1:10,9:21:37.91:165,0,38
4    76550861    rs1464071    T    C    94.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307465    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
4    76586913    rs151213011    AAT    A    179.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=16.9103;IndelType=D;MQ=62.13;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G3BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357854    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:221,15,0
4    76649924    rs2280095    C    G    251.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G3BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499709    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:284,24,0
4    76650176    rs7657871    C    G    465.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508939    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:498,39,0
4    76670180    rs3853184    T    C    206.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508939    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
4    76676464    rs7665517    T    G    410.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508939    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:443,33,0
4    76678576    rs4859552    A    G    558.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508939    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:592,45,0
4    76691828    rs324715    G    C    2085.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.59;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2119,160,0
4    76695810    rs10588680    TTCTC    T    4684.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.0;HRun=0;HaplotypeScore=423.5667;IndelType=D;MQ=55.57;MQ0=0;QD=57.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512893    GT:AD:DP:GQ:PL    1/1:2,79:81:99:4684,238,0
4    76711200    rs59160606    TA    T    130.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=11;HaplotypeScore=22.2176;IndelType=D;MQ=61.34;MQ0=0;QD=16.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:1,7:8:20.97:172,21,0
4    76720527    rs6843016    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    76720885    rs13119659    T    C    4587.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=F356;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_76720775_76720885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508939    GT:AD:DP:GQ:PL    1/1:1,141:142:99:4587,376,0
4    76721414    rs13145290    C    G    574.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:607,45,0
4    76721459    rs4859409    G    A    1488.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1521,120,0
4    76721671    rs67403765    C    CTT    2392.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.045;DB;DP=135;FS=0.0;HRun=15;HaplotypeScore=1213.1108;IndelType=I;MQ=50.57;MQ0=0;MQRankSum=0.584;QD=17.59;ReadPosRankSum=-2.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:55,42:135:99:2435,202,0
4    76721705    rs2271472    C    G    2674.12    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=30.8928;MQ=50.99;MQ0=0;QD=23.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:1,114:115:99:2707,208,0
4    76722041    rs324727    G    A    527.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,17:17:42.11:561,42,0
4    76722353    rs324726    G    A    2903.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=Q497;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_76722232_76722353;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508939    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2936,223,0
4    76722422    rs13133472    T    C    1562.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1596,129,0
4    76725093    rs6845147    G    A    129.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
4    76725245    rs381067    G    T    2681.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.68;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,72:73:99:2714,196,0
4    76726528    rs11733253    T    C    245.88    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=58.05;MQ0=0;MQRankSum=0.579;QD=20.49;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    0/1:1,11:12:8.16:276,0,8
4    76726539    rs11728073    C    T    468.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:502,39,0
4    76727576    rs34007796    GT    G    752.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=9;HaplotypeScore=78.6065;IndelType=D;MQ=59.95;MQ0=0;QD=25.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264904    GT:AD:DP:GQ:PL    1/1:0,29:29:87.05:794,87,0
4    76727932    rs11097122    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508454    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
4    76730004    rs324687    G    C    637.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508454    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:670,51,0
4    76730061    rs324688    T    A    873.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508454    GT:AD:DP:GQ:PL    1/1:0,31:31:75.23:907,75,0
4    76730258    rs324690    T    C    552.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.61;MQ0=0;QD=29.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508454    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:585,48,0
4    76730309    rs67303985    CTTTAGATTACTTACTAGCCGG    C    1030.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=162.6519;IndelType=D;MQ=29.0;MQ0=0;QD=147.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508454    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:1073,18,0
4    76730373    rs324691    T    C    101.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=25.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508454    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
4    76734176    rs324698    T    G    84.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504414    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    76734343    rs17284996    C    T    1938.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504414    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1971,144,0
4    76785716    rs1394913    C    T    947.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337500    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:981,72,0
4    76785723    rs1394914    A    G    941.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;MQRankSum=-0.462;QD=31.37;ReadPosRankSum=1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337500    GT:AD:DP:GQ:PL    1/1:1,29:30:72.23:974,72,0
4    76785736    rs1394915    T    C    742.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337500    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:775,57,0
4    76787673    rs7654738    T    C    1223.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.39;MQ0=0;QD=32.2;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000337500    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1257,96,0
4    76788692    rs2135234    C    T    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286719    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
4    76793228    rs1394916    A    G    1593.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.21;SNPEFF_AMINO_ACID_CHANGE=I533;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_76793178_76793320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286719    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1626,123,0
4    76794345    rs6858658    T    G    1465.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.99;MQ0=0;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=M481L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_76794280_76794465;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286719    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1499,111,0
4    76797337    .    A    AAGAG    3191.92    PASS    AC=2;AF=1.00;AN=2;DP=43;FS=0.0;HRun=0;HaplotypeScore=130.3029;IndelType=I;MQ=55.87;MQ0=0;QD=72.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286719    GT:AD:DP:GQ:PL    1/1:3,41:43:99:3234,126,0
4    76797950    rs13132709    G    A    68.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.56;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286719    GT:AD:DP:GQ:PL    0/1:5,3:8:98.44:98,0,185
4    76800729    rs13130621    A    G    637.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513324    GT:AD:DP:GQ:PL    1/1:0,21:21:57.16:671,57,0
4    76800991    rs68095351    A    AT    229.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=39.2246;IndelType=I;MQ=61.34;MQ0=0;QD=14.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513324    GT:AD:DP:GQ:PL    1/1:7,9:16:26.96:272,27,0
4    76804067    rs4859564    A    G    1727.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515552    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1760,141,0
4    76805577    rs34238193    C    CA    277.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DB;DP=18;FS=0.0;HRun=14;HaplotypeScore=72.0048;IndelType=I;MQ=61.71;MQ0=0;MQRankSum=0.373;QD=15.39;ReadPosRankSum=0.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503352    GT:AD:DP:GQ:PL    1/1:3,15:18:11.35:319,11,0
4    76805692    rs7666135    A    G    3161.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503352    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3194,259,0
4    76805902    rs1976518    C    T    5686.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.71;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=P197;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_76805747_76805913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286719    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5687,415,0
4    76805962    rs1976517    G    A    2388.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.1;MQ0=0;QD=33.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503352    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2421,187,0
4    76805978    rs1566975    C    T    2321.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=38.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503352    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2354,175,0
4    76809319    rs7691712    A    G    2672.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2829;MQ=59.75;MQ0=0;QD=28.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503352    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2705,217,0
4    76809386    rs7691755    A    G    4070.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=S171;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_76809367_76809481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286719    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4070,316,0
4    76810940    rs2047984    T    C    171.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510607    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
4    76812673    rs13116688    C    G    1472.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.825;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.65;QD=34.25;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510607    GT:AD:DP:GQ:PL    1/1:1,42:43:84.04:1506,84,0
4    76817412    rs11731367    G    A    753.59    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.396;DB;DP=69;Dels=0.0;FS=2.067;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=10.92;ReadPosRankSum=-0.338;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286719    GT:AD:DP:GQ:PL    0/1:42,27:69:99:784,0,1381
4    76836137    rs6823734    A    G    1573.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=F334L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_76836021_76836138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAAA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286733    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1606,123,0
4    76836141    .    G    A    613.08    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.51;DP=44;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.8133;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=13.93;ReadPosRankSum=-1.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505594    GT:AD:DP:GQ:PL    0/1:20,24:44:99:643,0,687
4    76841748    rs2280101    A    G    98.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286733    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:131,12,0
4    76846755    rs937788    T    C    300.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399490    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:334,24,0
4    76852585    rs13125558    A    C    126.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507187    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
4    76861137    rs6847716    G    C    582.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=27.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502543    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:615,51,0
4    76861859    rs2292533    C    T    76.71    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=10.96;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502543    GT:AD:DP:GQ:PL    0/1:2,5:7:66.72:107,0,67
4    76877402    rs9790644    G    A    489.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.33;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513089    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:523,42,0
4    76879198    rs56296558    C    T    441.38    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.285;QD=12.26;ReadPosRankSum=0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513089    GT:AD:DP:GQ:PL    0/1:19,17:36:99:471,0,677
4    76881233    rs34627298    G    T    541.82    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.802;DB;DP=36;Dels=0.0;FS=1.324;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.963;QD=15.05;ReadPosRankSum=-0.096;SNPEFF_AMINO_ACID_CHANGE=A453D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_76881219_76881345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395711    GT:AD:DP:GQ:PL    0/1:15,21:36:99:572,0,483
4    76881392    rs67906710    C    T    620.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356260    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:653,48,0
4    76885090    rs7349626    A    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    76885423    rs2271527    T    C    636.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507396    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:669,51,0
4    76888168    rs11097192    T    C    37.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.08;MQ0=0;QD=18.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515836    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
4    76888235    rs12648437    A    G    112.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515836    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
4    76902775    rs3733239    A    C    89.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356260    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
4    76903036    rs10008757    A    G    358.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356260    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:391,33,0
4    76924933    rs10031452    T    C    770.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.03;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264888    GT:AD:DP:GQ:PL    1/1:0,24:24:69.18:803,69,0
4    76928729    rs2276885    A    G    313.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.54;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:347,27,0
4    76942943    rs3921    C    G    963.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:996,72,0
4    76943137    rs4859584    G    C    5075.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8662;MQ=59.67;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,141:141:99:5075,367,0
4    76943235    rs4859586    T    C    2459.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=37.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2493,181,0
4    76943296    rs4859587    A    C    1047.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,32:32:93.27:1081,93,0
4    76943677    rs4859588    G    A    1570.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.27;MQ0=0;QD=39.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1604,117,0
4    76943764    rs56139724    CT    C    568.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=7;HaplotypeScore=95.8121;IndelType=D;MQ=60.9;MQ0=0;QD=23.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:3,21:24:60.13:610,60,0
4    76944491    rs4241578    T    C    895.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:928,72,0
4    76955914    rs6532111    T    C    749.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:783,60,0
4    76956188    rs4241580    T    C    1743.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1777,132,0
4    76956289    rs5859488    C    CAA    3104.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=2;HaplotypeScore=149.0222;IndelType=I;MQ=59.72;MQ0=0;QD=50.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:1,59:60:99:3147,172,0
4    76956528    rs4859415    A    G    779.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:812,60,0
4    76956630    rs4859597    A    T    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    76957043    rs6817952    G    A    449.08    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=47;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.186;QD=9.55;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:29,18:47:99:479,0,915
4    76957171    rs6819597    C    T    1442.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_76957080_76957217;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503860    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1475,108,0
4    76996958    rs6532172    G    A    783.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:817,60,0
4    76997258    rs7676265    T    C    371.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.1;MQ0=0;QD=21.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    1/1:0,17:17:36.09:404,36,0
4    77002905    rs150056837    TAATA    T    670.91    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=2.884;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=194.3635;IndelType=D;MQ=52.76;MQ0=0;MQRankSum=-0.961;QD=29.17;ReadPosRankSum=1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:10,13:23:99:710,0,771
4    77002934    rs61693363    G    A    620.55    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.271;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=53.88;MQ0=0;MQRankSum=-2.64;QD=14.78;ReadPosRankSum=-0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:19,23:42:99:651,0,558
4    77002952    rs4267761    G    A    587.15    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=52;Dels=0.0;FS=1.303;HRun=1;HaplotypeScore=0.9789;MQ=55.11;MQ0=0;MQRankSum=3.226;QD=11.29;ReadPosRankSum=1.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:31,21:52:99:617,0,915
4    77021288    rs7654988    G    C    521.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513494    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:554,39,0
4    77025273    rs7682766    C    T    253.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513494    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
4    77025810    rs17224545    G    A    209.45    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=13;Dels=0.0;FS=5.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=16.11;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:5,8:13:99:239,0,157
4    77025840    rs13130116    C    T    68.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=6.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:6,5:11:98.02:98,0,222
4    77028783    rs10033843    G    A    153.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=17.01;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:3,6:9:73.39:183,0,73
4    77033590    rs1128864    C    T    800.41    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.705;DB;DP=62;Dels=0.0;FS=2.28;HRun=1;HaplotypeScore=0.9832;MQ=59.7;MQ0=0;MQRankSum=0.506;QD=12.91;ReadPosRankSum=0.692;SNPEFF_AMINO_ACID_CHANGE=S341L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77033539_77033955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:36,26:62:99:830,0,1138
4    77033721    rs62318929    G    A    810.16    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.587;DB;DP=47;Dels=0.0;FS=6.722;HRun=0;HaplotypeScore=0.9993;MQ=59.6;MQ0=0;MQRankSum=0.742;QD=17.24;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395688    GT:AD:DP:GQ:PL    0/1:21,26:47:99:840,0,622
4    77033725    rs14773    C    A    431.19    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=10.27;ReadPosRankSum=0.564;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395688    GT:AD:DP:GQ:PL    0/1:25,17:42:99:461,0,858
4    77036369    rs1127695    G    A    76.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=15.25;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:2,3:5:30.97:106,0,31
4    77036406    rs17001433    T    G    143.33    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=57.87;MQ0=0;MQRankSum=-0.365;QD=13.03;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:5,6:11:99:173,0,128
4    77038807    rs7657846    C    T    937.65    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.236;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=16.74;ReadPosRankSum=-0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341029    GT:AD:DP:GQ:PL    0/1:25,31:56:99:968,0,811
4    77038974    rs6532201    T    A    502.92    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.028;DB;DP=37;Dels=0.0;FS=3.259;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=13.59;ReadPosRankSum=0.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    0/1:20,17:37:99:533,0,668
4    77039174    rs6813732    G    C    685.56    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=48;Dels=0.0;FS=5.351;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.743;QD=14.28;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    0/1:23,25:48:99:716,0,789
4    77039193    rs6840007    A    T    820.17    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.099;DB;DP=55;Dels=0.0;FS=8.257;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.75;QD=14.91;ReadPosRankSum=0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    0/1:26,29:55:99:850,0,828
4    77039521    rs4498155    T    C    74.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    1/1:0,4:4:9:107,9,0
4    77045728    rs7692789    A    T    120.78    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=17;Dels=0.0;FS=3.14;HRun=4;HaplotypeScore=7.7321;MQ=54.32;MQ0=0;MQRankSum=-2.196;QD=7.1;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504173    GT:AD:DP:GQ:PL    0/1:10,7:17:99:151,0,323
4    77045762    rs7697701    T    G    271.99    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.02;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=52.91;MQ0=0;MQRankSum=-2.981;QD=8.77;ReadPosRankSum=-1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    0/1:19,12:31:99:302,0,651
4    77045777    rs77285742    TGG    T    464.36    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=4.759;DB;DP=36;FS=1.725;HRun=7;HaplotypeScore=210.3006;IndelType=D;MQ=53.21;MQ0=1;MQRankSum=-3.391;QD=12.55;ReadPosRankSum=-2.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    0/1:21,16:36:99:503,0,925
4    77052288    rs60523248    T    C    286.90    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.416;QD=13.66;ReadPosRankSum=0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514313    GT:AD:DP:GQ:PL    0/1:11,10:21:99:317,0,341
4    77052530    rs13126384    T    C    288.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506098    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
4    77053558    rs7698392    A    G    348.10    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.228;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=17.41;ReadPosRankSum=0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506098    GT:AD:DP:GQ:PL    0/1:9,11:20:99:378,0,307
4    77053562    rs4859619    C    T    871.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506098    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:904,66,0
4    77055474    rs11097244    A    G    567.53    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.091;DB;DP=34;Dels=0.0;FS=3.086;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.162;QD=16.69;ReadPosRankSum=-0.992;SNPEFF_AMINO_ACID_CHANGE=D140;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77055328_77055515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514987    GT:AD:DP:GQ:PL    0/1:13,21:34:99:598,0,382
4    77057501    rs11558468    A    G    894.45    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.898;DB;DP=79;Dels=0.0;FS=0.897;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=11.32;ReadPosRankSum=0.78;SNPEFF_AMINO_ACID_CHANGE=T120;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77057339_77057565;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    0/1:46,33:79:99:924,0,1399
4    77065142    rs66599877    C    T    214.92    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=21.49;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508583    GT:AD:DP:GQ:PL    0/1:3,7:10:90.81:245,0,91
4    77065223    rs11724260    A    G    1271.46    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.034;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=58.17;MQ0=0;MQRankSum=0.026;QD=16.51;ReadPosRankSum=0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508583    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1301,0,1169
4    77065264    rs11736522    C    T    4808.84    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=18.355;MQ=59.23;MQ0=0;QD=35.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508583    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4809,355,0
4    77065318    rs36024409    C    CTGT    5908.29    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.824;DB;DP=223;FS=4.175;HRun=0;HaplotypeScore=984.6893;IndelType=I;MQ=59.03;MQ0=0;MQRankSum=-0.622;QD=26.49;ReadPosRankSum=-1.344;SNPEFF_AMINO_ACID_CHANGE=Q147HK;SNPEFF_CODON_CHANGE=cag/cACAag;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_4_77065283_77065445;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000514901    GT:AD:DP:GQ:PL    0/1:114,105:223:99:5908,0,4567
4    77065476    rs34792727    TAAA    T    2235.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-4.126;DB;DP=172;FS=0.0;HRun=15;HaplotypeScore=1129.3123;IndelType=D;MQ=55.53;MQ0=0;MQRankSum=-0.581;QD=13.0;ReadPosRankSum=1.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    1/1:48,70:172:99:2278,101,0
4    77065518    rs11946345    T    C    3130.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=58.13;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    1/1:1,99:100:99:3164,262,0
4    77065580    rs11558469    T    C    934.38    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.792;DB;DP=67;Dels=0.0;FS=8.856;HRun=0;HaplotypeScore=1.894;MQ=58.96;MQ0=0;MQRankSum=-1.59;QD=13.95;ReadPosRankSum=0.251;SNPEFF_AMINO_ACID_CHANGE=A38;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77065543_77065626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUP54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264883    GT:AD:DP:GQ:PL    0/1:30,36:67:99:964,0,873
4    77083070    rs76513780    TCAG    T    193.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=28.1755;IndelType=D;MQ=53.82;MQ0=0;QD=32.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511129    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:235,15,0
4    77084589    rs35583533    T    C    293.50    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.315;DB;DP=21;Dels=0.0;FS=13.457;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.178;QD=13.98;ReadPosRankSum=-1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:9,12:21:99:323,0,304
4    77089311    rs60157651    G    C    30.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.22;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:1,2:3:29.56:61,0,30
4    77091006    rs35369082    A    T    485.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.318;DB;DP=40;Dels=0.0;FS=3.005;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.407;QD=12.14;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:20,20:40:99:515,0,642
4    77091186    rs113848239    AAGCTG    A    756.63    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.901;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=148.7228;IndelType=D;MQ=55.96;MQ0=0;MQRankSum=-0.102;QD=28.02;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:13,14:27:99:796,0,667
4    77095143    rs13119254    A    G    470.56    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.057;QD=14.26;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:18,15:33:99:501,0,594
4    77095215    rs41284767    C    T    1819.50    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.301;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4536;MQ=59.59;MQ0=0;MQRankSum=-0.723;QD=17.67;ReadPosRankSum=-0.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:46,56:102:99:1849,0,1410
4    77095271    rs3821981    A    G    3032.76    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=5.577;DB;DP=193;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.0963;MQ=59.9;MQ0=0;MQRankSum=-0.482;QD=15.71;ReadPosRankSum=-1.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:93,100:193:99:3063,0,2901
4    77096843    rs34334700    C    T    307.66    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DB;DP=18;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.666;QD=17.09;ReadPosRankSum=0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:8,10:18:99:338,0,247
4    77097137    rs2289512    T    C    169.43    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.556;QD=11.3;ReadPosRankSum=-0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502908    GT:AD:DP:GQ:PL    0/1:7,8:15:99:199,0,256
4    77097189    rs2289513    C    T    31.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.32;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502908    GT:AD:DP:GQ:PL    0/1:4,2:6:61.90:62,0,142
4    77097758    rs6532232    T    C    55.68    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.74;QD=4.64;ReadPosRankSum=-1.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502908    GT:AD:DP:GQ:PL    0/1:9,3:12:85.67:86,0,338
4    77100901    rs894248    A    G    971.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.131;DB;DP=84;Dels=0.0;FS=1.573;HRun=1;HaplotypeScore=2.8386;MQ=59.73;MQ0=0;MQRankSum=0.032;QD=11.56;ReadPosRankSum=-0.809;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502908    GT:AD:DP:GQ:PL    0/1:48,36:84:99:1001,0,1623
4    77101972    rs2304813    G    A    99.70    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=14.24;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509994    GT:AD:DP:GQ:PL    0/1:2,5:7:59.57:130,0,60
4    77102006    rs2304814    C    G    246.20    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.337;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=14.48;ReadPosRankSum=1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509994    GT:AD:DP:GQ:PL    0/1:8,9:17:99:276,0,283
4    77117096    rs3733259    G    A    104.26    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.103;QD=9.48;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264896    GT:AD:DP:GQ:PL    0/1:5,6:11:99:134,0,175
4    77134786    rs11547135    C    T    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339906    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
4    77189984    rs1876538    T    C    1319.79    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.568;DB;DP=87;Dels=0.0;FS=0.889;HRun=0;HaplotypeScore=1.8237;MQ=60.0;MQ0=0;MQRankSum=0.669;QD=15.17;ReadPosRankSum=-0.907;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512895    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1350,0,1240
4    77190069    rs1876539    C    T    361.29    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.154;QD=15.71;ReadPosRankSum=-1.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512895    GT:AD:DP:GQ:PL    0/1:12,11:23:99:391,0,324
4    77192688    rs3733253    G    T    980.69    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=59.61;MQ0=0;MQRankSum=1.849;QD=16.62;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512895    GT:AD:DP:GQ:PL    0/1:27,32:59:99:1011,0,859
4    77192868    rs3733250    G    A    810    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.669;DB;DP=65;Dels=0.0;FS=4.165;HRun=1;HaplotypeScore=0.9983;MQ=59.29;MQ0=0;MQRankSum=-0.378;QD=12.46;ReadPosRankSum=-0.444;SNPEFF_AMINO_ACID_CHANGE=E120K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77192721_77192921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509377    GT:AD:DP:GQ:PL    0/1:37,28:65:99:840,0,1270
4    77199414    rs964051    C    A    344.92    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=19;Dels=0.0;FS=2.452;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=18.15;ReadPosRankSum=1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339906    GT:AD:DP:GQ:PL    0/1:7,12:19:99:375,0,165
4    77201487    rs1036788    C    T    73.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=7.37;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=T268M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77201417_77201494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339906    GT:AD:DP:GQ:PL    0/1:5,5:10:99:104,0,156
4    77204500    rs1542096    C    T    378.96    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.318;DB;DP=23;Dels=0.0;FS=11.083;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=16.48;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510328    GT:AD:DP:GQ:PL    0/1:10,13:23:99:409,0,350
4    77231294    rs3733248    A    C    79.05    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.51;QD=4.65;ReadPosRankSum=2.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318586    GT:AD:DP:GQ:PL    0/1:13,4:17:99:109,0,481
4    77274242    rs12504985    T    C    449.76    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.462;DB;DP=32;Dels=0.0;FS=4.501;HRun=0;HaplotypeScore=2.5407;MQ=59.42;MQ0=0;MQRankSum=2.146;QD=14.05;ReadPosRankSum=-0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318586    GT:AD:DP:GQ:PL    0/1:18,14:32:99:480,0,561
4    77278411    rs4241592    T    C    217.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318586    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
4    77290561    rs72657825    G    A    280.32    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=14.02;ReadPosRankSum=-0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318586    GT:AD:DP:GQ:PL    0/1:8,10:20:99:310,0,268
4    77292801    rs6853408    C    T    114.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.08;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434846    GT:AD:DP:GQ:PL    0/1:2,4:6:51.55:144,0,52
4    77303621    rs17252554    C    T    208.28    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.037;QD=18.93;ReadPosRankSum=1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509851    GT:AD:DP:GQ:PL    0/1:4,7:11:99:238,0,133
4    77303898    rs6844174    C    T    1038.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509851    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1072,78,0
4    77324078    rs963508    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318586    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    77357491    .    C    CT    236.83    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DP=12;FS=0.0;HRun=0;HaplotypeScore=134.9315;IndelType=I;MQ=44.62;MQ0=0;MQRankSum=-2.793;QD=19.74;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296043    GT:AD:DP:GQ:PL    0/1:5,7:12:99:276,0,174
4    77357497    .    T    TAAA    420.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DP=12;FS=0.0;HRun=0;HaplotypeScore=136.9285;IndelType=I;MQ=44.62;MQ0=0;MQRankSum=-1.932;QD=35.07;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296043    GT:AD:DP:GQ:PL    0/1:6,6:12:99:460,0,188
4    77357528    rs11944802    G    T    59.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.988;QD=9.91;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296043    GT:AD:DP:GQ:PL    0/1:3,3:6:89.46:89,0,108
4    77631425    rs3821979    T    A    158.69    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.972;DB;DP=26;Dels=0.0;FS=4.813;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.306;QD=6.1;ReadPosRankSum=0.472;SNPEFF_AMINO_ACID_CHANGE=L147H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77631309_77631440;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296043    GT:AD:DP:GQ:PL    0/1:18,8:26:99:189,0,639
4    77637502    rs344122    A    C    6427.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8332;MQ=59.49;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=T7P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77637154_77637563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380735    GT:AD:DP:GQ:PL    1/1:0,180:180:99:6428,482,0
4    77652219    rs344135    T    C    297.37    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.534;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.39;QD=12.39;ReadPosRankSum=0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264907    GT:AD:DP:GQ:PL    0/1:13,11:24:99:327,0,448
4    77660162    rs344140    G    C    1414.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9999;MQ=59.48;MQ0=0;MQRankSum=0.296;QD=32.14;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=G279A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77659914_77663079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296043    GT:AD:DP:GQ:PL    1/1:2,42:44:86.94:1447,87,0
4    77660731    rs344141    C    G    584.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.272;DB;DP=75;Dels=0.0;FS=0.923;HRun=0;HaplotypeScore=0.5784;MQ=59.13;MQ0=0;MQRankSum=0.33;QD=7.8;ReadPosRankSum=-1.0;SNPEFF_AMINO_ACID_CHANGE=P469A;SNPEFF_CODON_CHANGE=Ccg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77659914_77663079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296043    GT:AD:DP:GQ:PL    0/1:45,30:75:99:615,0,1449
4    77662248    rs60216375    G    A    73.34    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.33;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=S974;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77659914_77663079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296043    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:103,0,21
4    77675200    rs3821978    C    T    54.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1068;MQ=56.62;MQ0=0;MQRankSum=1.537;QD=7.84;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264907    GT:AD:DP:GQ:PL    0/1:3,3:7:84.88:85,0,105
4    77675505    rs3733242    C    T    5177.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9663;MQ=59.53;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=P1290L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77675464_77676345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296043    GT:AD:DP:GQ:PL    1/1:0,147:147:99:5178,385,0
4    77817362    rs2703131    T    C    39.93    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.45;DB;DP=19;Dels=0.0;FS=2.539;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.05;QD=2.1;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=L547;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77816082_77819002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334306    GT:AD:DP:GQ:PL    0/1:15,4:19:69.92:70,0,501
4    77817874    rs2703130    G    T    1304.51    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.148;DB;DP=95;Dels=0.0;FS=3.933;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=13.73;ReadPosRankSum=0.575;SNPEFF_AMINO_ACID_CHANGE=P377T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_77816082_77819002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334306    GT:AD:DP:GQ:PL    0/1:50,45:95:99:1335,0,1481
4    77917458    rs7685131    A    G    486.77    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.872;DB;DP=29;Dels=0.0;FS=3.485;HRun=3;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.46;QD=16.79;ReadPosRankSum=-0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264893    GT:AD:DP:GQ:PL    0/1:13,16:29:99:517,0,436
4    77949997    rs111698952    TGGTCCAA    T    335.43    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=87.6287;IndelType=D;MQ=43.61;MQ0=0;MQRankSum=-2.45;QD=25.8;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264893    GT:AD:DP:GQ:PL    0/1:8,5:13:99:374,0,489
4    77987351    rs4241602    A    G    920.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237654    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:953,75,0
4    78079772    rs4150052    G    A    857.84    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=0.565;DB;DP=44;Dels=0.0;FS=4.837;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=19.5;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=E29;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_78079686_78079823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316355    GT:AD:DP:GQ:PL    0/1:17,27:44:99:888,0,494
4    78081744    rs28648488    G    C    494.22    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.161;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6609;MQ=57.29;MQ0=0;MQRankSum=0.742;QD=19.01;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316355    GT:AD:DP:GQ:PL    0/1:8,17:26:99:524,0,256
4    78086780    .    A    G    30.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.05;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509972    GT:AD:DP:GQ:PL    0/1:4,2:6:60.30:60,0,140
4    78106123    rs28503908    C    T    190.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.568;QD=19.04;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354403    GT:AD:DP:GQ:PL    0/1:4,6:10:99:220,0,123
4    78106441    rs6822800    C    A    69.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=9.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354403    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,142
4    78669454    rs6855336    A    G    3271.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.75;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264903    GT:AD:DP:GQ:PL    1/1:1,93:94:99:3272,244,0
4    78697552    rs34417165    T    TA    1287.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.314;DB;DP=72;FS=0.0;HRun=11;HaplotypeScore=352.6345;IndelType=I;MQ=56.11;MQ0=0;MQRankSum=1.613;QD=17.88;ReadPosRankSum=1.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264903    GT:AD:DP:GQ:PL    1/1:17,33:72:99:1329,162,0
4    78740689    .    G    A    33.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.8;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512485    GT:AD:DP:GQ:PL    0/1:3,2:5:63.98:64,0,106
4    78804237    rs12509847    C    G    91.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315567    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
4    78830272    rs34171605    AAC    A    160.55    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=25.4175;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=0.198;QD=22.94;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315567    GT:AD:DP:GQ:PL    0/1:2,5:7:91.41:200,0,91
4    78870940    rs4859513    T    A    605.56    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=13.16;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315567    GT:AD:DP:GQ:PL    0/1:22,24:46:99:636,0,611
4    78873605    rs35979107    A    G    610.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.374;QD=20.36;ReadPosRankSum=1.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315567    GT:AD:DP:GQ:PL    0/1:10,20:30:99:641,0,296
4    78873629    rs17002849    G    A    714.92    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=2.576;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.47;MQ0=0;MQRankSum=-0.231;QD=20.43;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315567    GT:AD:DP:GQ:PL    0/1:11,24:35:99:745,0,314
4    78987157    rs4859905    A    G    2825.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8857;MQ=59.72;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=D32G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_78987139_78987170;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2859,214,0
4    78987328    rs4859907    A    G    359.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:392,30,0
4    79103004    rs113677459    G    A    644.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.436;DB;DP=55;Dels=0.0;FS=4.035;HRun=0;HaplotypeScore=0.8667;MQ=58.5;MQ0=0;MQRankSum=0.496;QD=11.73;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:30,24:55:99:675,0,807
4    79103259    rs2280223    G    A    286.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.801;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=58.91;MQ0=0;MQRankSum=-0.136;QD=11.04;ReadPosRankSum=-0.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:13,13:26:99:317,0,459
4    79109613    rs58661619    C    G    186.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=58.33;MQ0=0;MQRankSum=0.068;QD=13.31;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:7,7:14:99:216,0,194
4    79109675    rs2866997    T    C    480.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:514,39,0
4    79158843    rs10011303    G    T    897.37    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.82;DB;DP=68;Dels=0.0;FS=4.932;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.157;QD=13.2;ReadPosRankSum=-0.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:37,31:68:99:927,0,1227
4    79173335    rs13117388    C    T    48.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=12.03;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:1,3:4:30.64:78,0,31
4    79173515    rs34015316    C    CT    622.39    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=73;FS=2.213;HRun=11;HaplotypeScore=278.777;IndelType=I;MQ=59.48;MQ0=0;MQRankSum=-0.702;QD=8.53;ReadPosRankSum=-2.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:41,28:73:99:661,0,622
4    79176245    rs1017648    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
4    79176325    rs1017647    C    T    674.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:707,51,0
4    79176361    rs1017646    T    C    1354.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=2.5648;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1387,108,0
4    79186047    rs6856362    G    A    101.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.15;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:6,4:10:99:131,0,203
4    79186171    rs2867014    G    A    1262.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,41:41:96.30:1296,96,0
4    79187832    rs2008587    G    A    431.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:465,36,0
4    79187900    rs7694740    T    G    604.05    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=31;Dels=0.0;FS=9.209;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=19.49;ReadPosRankSum=0.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:13,18:31:99:634,0,438
4    79188160    rs2008786    C    T    316.16    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=0.531;DB;DP=43;Dels=0.0;FS=3.224;HRun=0;HaplotypeScore=1.6648;MQ=59.57;MQ0=0;MQRankSum=2.268;QD=7.35;ReadPosRankSum=-0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:29,14:43:99:346,0,842
4    79188161    rs2198635    G    A    789.86    PASS    AB=0.317;AC=1;AF=0.50;AN=2;BaseQRankSum=0.434;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6648;MQ=59.56;MQ0=0;MQRankSum=1.667;QD=18.81;ReadPosRankSum=0.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:13,28:42:99:820,0,381
4    79202486    rs35419939    A    G    478.89    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.01;DB;DP=42;Dels=0.0;FS=6.15;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.484;QD=11.4;ReadPosRankSum=1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:23,19:42:99:509,0,786
4    79202779    rs34535077    G    A    37.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=7.59;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:2,3:5:67.92:68,0,70
4    79203766    rs34796366    TA    T    174.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=4;HaplotypeScore=18.0978;IndelType=D;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:216,18,0
4    79204209    rs1378236    C    T    328.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=56.04;MQ0=0;QD=27.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:362,27,0
4    79205699    rs12504081    T    A    1624.26    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.641;DB;DP=107;Dels=0.0;FS=2.627;HRun=0;HaplotypeScore=3.4345;MQ=60.0;MQ0=0;MQRankSum=-0.013;QD=15.18;ReadPosRankSum=-1.353;SNPEFF_AMINO_ACID_CHANGE=L206I;SNPEFF_CODON_CHANGE=Tta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79205559_79205702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534913    GT:AD:DP:GQ:PL    0/1:52,55:107:99:1654,0,1753
4    79205747    rs6815945    A    G    670.71    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.182;DB;DP=53;Dels=0.0;FS=5.962;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.579;QD=12.65;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:31,22:53:99:701,0,991
4    79205838    rs1958276    G    A    80.49    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.12;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
4    79207784    rs967635    G    T    517.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534913    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:550,42,0
4    79229435    rs41537644    C    G    245.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.844;QD=13.64;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:10,8:18:99:275,0,368
4    79238448    rs345515    T    C    615.03    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.82;DB;DP=38;Dels=0.0;FS=6.793;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.449;QD=16.19;ReadPosRankSum=-0.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:15,22:38:99:645,0,476
4    79238649    rs345514    T    C    290.48    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.083;DB;DP=34;Dels=0.0;FS=2.147;HRun=0;HaplotypeScore=0.5784;MQ=59.32;MQ0=0;MQRankSum=-1.488;QD=8.54;ReadPosRankSum=-1.595;SNPEFF_AMINO_ACID_CHANGE=H649;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79238522_79238662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:21,13:34:99:320,0,706
4    79240063    rs345513    A    G    1639.31    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=3.139;DB;DP=133;Dels=0.0;FS=0.676;HRun=1;HaplotypeScore=2.5352;MQ=59.76;MQ0=0;MQRankSum=-1.062;QD=12.33;ReadPosRankSum=0.093;SNPEFF_AMINO_ACID_CHANGE=D687G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79239964_79240140;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:75,58:133:99:1669,0,2052
4    79240473    rs345511    C    T    487.02    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-2.018;QD=14.32;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:16,18:34:99:517,0,521
4    79284694    rs6835769    C    T    869.22    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.544;DB;DP=63;Dels=0.0;FS=2.146;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.544;QD=13.8;ReadPosRankSum=1.507;SNPEFF_AMINO_ACID_CHANGE=A817V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79284667_79284819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:30,33:63:99:899,0,921
4    79295418    rs34889042    C    CTG    1934.10    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.66;DB;DP=117;FS=2.717;HRun=0;HaplotypeScore=325.325;IndelType=I;MQ=59.52;MQ0=1;MQRankSum=1.884;QD=16.39;ReadPosRankSum=-1.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:76,41:117:99:1973,0,2729
4    79300656    rs11098164    C    T    97.75    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.278;QD=8.89;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,248
4    79334264    rs1872268    T    A    793.26    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=63;Dels=0.0;FS=3.945;HRun=0;HaplotypeScore=2.5314;MQ=60.0;MQ0=0;MQRankSum=0.268;QD=12.59;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:34,28:63:99:823,0,1104
4    79340016    rs34936138    A    AT    399.68    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.136;DB;DP=42;FS=0.0;HRun=9;HaplotypeScore=97.5223;IndelType=I;MQ=60.26;MQ0=0;MQRankSum=1.416;QD=9.52;ReadPosRankSum=-0.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:25,17:42:99:439,0,502
4    79340361    rs11727906    C    T    224.24    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.191;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=11.21;ReadPosRankSum=-1.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:11,9:20:99:254,0,346
4    79340403    rs147566920    A    G    156.62    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.1;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:187,0,23
4    79343111    rs78575519    G    A    2137.90    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=3.009;DB;DP=164;Dels=0.0;FS=4.885;HRun=0;HaplotypeScore=2.1904;MQ=59.86;MQ0=0;MQRankSum=2.38;QD=13.04;ReadPosRankSum=1.171;SNPEFF_AMINO_ACID_CHANGE=P1545;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79343017_79343154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:90,74:164:99:2168,0,2789
4    79350115    rs2054722    C    T    104.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.361;QD=10.42;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,175
4    79350200    rs112867538    C    CTGTG    938.24    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.093;DB;DP=44;FS=1.762;HRun=0;HaplotypeScore=202.6519;IndelType=I;MQ=58.23;MQ0=0;MQRankSum=-0.015;QD=21.32;ReadPosRankSum=0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:29,13:44:99:977,0,828
4    79351249    rs2054721    C    A    120.70    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.309;QD=10.06;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:7,5:12:99:151,0,251
4    79351252    rs2054720    C    G    104.57    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.244;QD=8.71;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:7,5:12:99:135,0,254
4    79371474    rs17003235    C    T    1754.77    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.714;DB;DP=151;Dels=0.0;FS=2.099;HRun=0;HaplotypeScore=0.8321;MQ=59.85;MQ0=0;MQRankSum=-0.129;QD=11.54;ReadPosRankSum=-1.062;SNPEFF_AMINO_ACID_CHANGE=T2148;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79371305_79371493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:83,68:151:99:1785,0,2363
4    79372693    rs959539    T    G    95.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325942    GT:AD:DP:GQ:PL    0/1:8,4:12:99:126,0,291
4    79372856    rs10026662    A    C    621.09    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=64;Dels=0.0;FS=11.129;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.64;QD=9.7;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509802    GT:AD:DP:GQ:PL    0/1:37,26:64:99:651,0,1320
4    79372930    rs753752    C    T    1153.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.179;DB;DP=99;Dels=0.0;FS=5.087;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=1.623;QD=11.65;ReadPosRankSum=0.109;SNPEFF_AMINO_ACID_CHANGE=H2156;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79372926_79373045;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:55,44:99:99:1183,0,1677
4    79373254    rs753751    T    C    480.42    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=37;Dels=0.0;FS=3.641;HRun=1;HaplotypeScore=0.9983;MQ=59.38;MQ0=0;MQRankSum=0.046;QD=12.98;ReadPosRankSum=-0.904;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509802    GT:AD:DP:GQ:PL    0/1:21,16:37:99:510,0,760
4    79385034    rs10518199    G    A    348.21    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.243;QD=10.55;ReadPosRankSum=0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:21,12:33:99:378,0,753
4    79385803    rs11933507    G    A    246.70    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=24;Dels=0.0;FS=8.846;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.06;QD=10.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:15,9:24:99:277,0,542
4    79387278    rs4975120    C    A    679.81    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.395;DB;DP=52;Dels=0.0;FS=1.711;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.129;QD=13.07;ReadPosRankSum=0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:28,24:52:99:710,0,948
4    79387442    rs7660664    C    T    1558.26    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.407;DB;DP=115;Dels=0.0;FS=3.425;HRun=0;HaplotypeScore=1.5678;MQ=59.6;MQ0=0;MQRankSum=0.693;QD=13.55;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=H2370;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79387362_79387589;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:60,55:115:99:1588,0,1927
4    79387464    rs7684722    A    G    3457.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=59.79;MQ0=0;QD=32.02;SNPEFF_AMINO_ACID_CHANGE=K2378E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79387362_79387589;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3458,271,0
4    79387586    rs34840208    A    G    474.61    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.924;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.0;MQ0=0;MQRankSum=0.42;QD=8.79;ReadPosRankSum=-0.577;SNPEFF_AMINO_ACID_CHANGE=K2418;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79387362_79387589;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:31,23:54:99:505,0,1043
4    79391020    rs7681619    C    T    987.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1021,81,0
4    79391036    rs1496602    T    C    1405.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1438,108,0
4    79391256    rs7664505    T    C    3379.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3379,262,0
4    79391327    rs11728640    T    C    679.55    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.503;QD=14.46;ReadPosRankSum=-0.974;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:21,26:47:99:710,0,630
4    79391392    rs10018235    G    A    174.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=11.61;ReadPosRankSum=1.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:9,6:15:99:204,0,314
4    79391424    rs6533688    C    T    87.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.098;QD=8.76;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:5,5:10:99:118,0,162
4    79391427    rs11728668    T    G    100.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=12.59;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,146
4    79393269    rs28566963    T    C    905.42    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=3.656;DB;DP=52;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.862;QD=17.41;ReadPosRankSum=-2.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:20,32:52:99:935,0,630
4    79403682    rs41327848    C    T    2017.42    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.974;DB;DP=140;Dels=0.0;FS=0.748;HRun=2;HaplotypeScore=2.8818;MQ=60.0;MQ0=0;MQRankSum=-1.363;QD=14.41;ReadPosRankSum=-0.068;SNPEFF_AMINO_ACID_CHANGE=F2915;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79403542_79403689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:72,67:140:99:2047,0,2253
4    79403747    rs924149    C    A    812.64    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=3.69;DB;DP=47;Dels=0.0;FS=1.504;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.409;QD=17.29;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:20,27:47:99:843,0,488
4    79409899    rs1496604    T    C    123.20    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.978;QD=9.48;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:8,5:13:99:153,0,289
4    79409997    rs1496603    T    C    549.20    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.229;DB;DP=45;Dels=0.0;FS=1.522;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.287;QD=12.2;ReadPosRankSum=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:26,19:45:99:579,0,864
4    79417749    rs7698976    A    G    206.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:240,18,0
4    79417863    rs7674053    G    A    986.49    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.224;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.215;QD=15.18;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:34,31:65:99:1016,0,1216
4    79420664    rs4975133    C    T    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
4    79420787    rs4975134    C    T    577.20    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=1.108;QD=14.08;ReadPosRankSum=0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:21,20:41:99:607,0,722
4    79420864    rs7677541    T    C    1895.09    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.058;DB;DP=118;Dels=0.0;FS=2.716;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=16.06;ReadPosRankSum=0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:54,64:118:99:1925,0,1668
4    79420870    rs7695038    C    G    1734.27    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.079;DB;DP=124;Dels=0.0;FS=1.565;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=-0.59;QD=13.99;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:58,66:124:99:1764,0,1798
4    79421011    rs11933630    G    T    2021.79    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.0;DB;DP=137;Dels=0.0;FS=0.64;HRun=0;HaplotypeScore=0.8941;MQ=59.66;MQ0=0;MQRankSum=0.478;QD=14.76;ReadPosRankSum=-1.435;SNPEFF_AMINO_ACID_CHANGE=R3084;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79420875_79421075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:63,74:137:99:2052,0,1948
4    79428447    rs13141571    G    A    105.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=10.53;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,190
4    79428489    rs13118276    A    G    110.56    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=5.26;ReadPosRankSum=0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:15,6:21:99:141,0,548
4    79428796    rs28739412    C    T    673.93    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=5.647;DB;DP=57;Dels=0.0;FS=1.954;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.434;QD=11.82;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:35,22:57:99:704,0,982
4    79429693    rs28570979    A    G    56.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.33;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:6,3:9:86.93:87,0,221
4    79430211    rs146398969    GTTGTTCT    G    723.40    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=3.586;DB;DP=28;FS=5.653;HRun=0;HaplotypeScore=189.745;IndelType=D;MQ=48.97;MQ0=0;MQRankSum=-4.243;QD=25.84;ReadPosRankSum=0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:17,11:28:99:762,0,1580
4    79432256    rs1027445    A    G    262.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:296,24,0
4    79432286    rs11727770    A    C    657.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:690,51,0
4    79432455    rs3749488    A    C    1959.17    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.361;DB;DP=148;Dels=0.0;FS=0.617;HRun=0;HaplotypeScore=0.5784;MQ=59.22;MQ0=0;MQRankSum=0.086;QD=13.24;ReadPosRankSum=2.345;SNPEFF_AMINO_ACID_CHANGE=R3270;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79432428_79432660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:76,72:148:99:1989,0,2235
4    79432782    rs11728758    A    G    102.97    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=11.44;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,172
4    79434325    rs1496606    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    79434389    rs17429718    C    T    69.06    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.87;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:3,4:7:99:99,0,108
4    79434487    rs17469981    G    A    800.76    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.822;DB;DP=54;Dels=0.0;FS=7.128;HRun=0;HaplotypeScore=0.7887;MQ=59.57;MQ0=0;MQRankSum=1.099;QD=14.83;ReadPosRankSum=-1.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:26,28:54:99:831,0,845
4    79434685    rs35933858    T    G    1472.27    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.816;DB;DP=115;Dels=0.0;FS=1.532;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.411;QD=12.8;ReadPosRankSum=-0.844;SNPEFF_AMINO_ACID_CHANGE=Y3385D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79434546_79434706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:62,53:115:99:1502,0,1986
4    79434820    rs17470002    T    C    439.40    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.465;QD=17.58;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:11,14:25:99:469,0,299
4    79436778    rs13435277    G    A    101.25    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=16.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:1,5:6:19.31:131,0,19
4    79436875    rs76706917    G    A    360.13    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.6963;MQ=58.2;MQ0=0;MQRankSum=0.437;QD=13.85;ReadPosRankSum=-1.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:12,14:26:99:390,0,401
4    79436888    rs77815169    A    G    464.91    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.552;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7944;MQ=59.3;MQ0=0;MQRankSum=0.475;QD=14.09;ReadPosRankSum=-1.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:15,18:33:99:495,0,439
4    79437178    rs74632598    C    T    1072.37    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=5.659;DB;DP=70;Dels=0.0;FS=1.294;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.894;QD=15.32;ReadPosRankSum=1.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1102,0,840
4    79440333    rs139681108    ATAAG    A    305.25    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=99.778;IndelType=D;MQ=52.81;MQ0=0;MQRankSum=-1.027;QD=17.96;ReadPosRankSum=0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:10,7:17:99:344,0,513
4    79440425    rs2903471    T    C    1756.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.034;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=0.51;QD=32.52;ReadPosRankSum=-1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:1,52:54:99:1789,100,0
4    79440747    rs10518200    A    T    421.55    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.026;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.694;QD=16.21;ReadPosRankSum=-1.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:12,14:26:99:452,0,413
4    79440804    rs74589954    C    T    192.18    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=16.02;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:5,7:12:99:222,0,160
4    79440882    rs17470553    C    A    33.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:63,0,30
4    79442558    rs76957624    G    A    625.11    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.544;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8096;MQ=59.38;MQ0=0;MQRankSum=-0.716;QD=16.89;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:17,20:37:99:655,0,540
4    79442799    rs112643710    GT    G    2083.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.0;HRun=10;HaplotypeScore=262.0091;IndelType=D;MQ=60.3;MQ0=0;QD=21.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:11,84:95:99:2126,246,0
4    79443611    rs931603    G    T    59.20    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=7.4;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:5,3:8:89.19:89,0,182
4    79443774    rs931604    T    A    2249.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2283,178,0
4    79443837    rs931605    A    T    1161.45    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.171;DB;DP=93;Dels=0.0;FS=0.81;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.089;QD=12.49;ReadPosRankSum=0.997;SNPEFF_AMINO_ACID_CHANGE=E3561D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79443803_79443962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:53,40:93:99:1191,0,1710
4    79443850    rs931606    G    A    3396.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DB;DP=97;Dels=0.0;FS=3.388;HRun=0;HaplotypeScore=1.5773;MQ=60.0;MQ0=0;MQRankSum=0.108;QD=35.01;ReadPosRankSum=1.371;SNPEFF_AMINO_ACID_CHANGE=V3566I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79443803_79443962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:1,96:97:99:3396,215,0
4    79444029    rs1496598    G    A    1283.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1317,99,0
4    79444043    rs11731315    C    T    421.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.187;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=13.18;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:16,16:32:99:452,0,540
4    79455714    rs4975070    C    G    886.58    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=88;Dels=0.0;FS=1.919;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.117;QD=10.07;ReadPosRankSum=-0.342;SNPEFF_AMINO_ACID_CHANGE=P3679;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79455603_79455769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:52,36:88:99:917,0,1803
4    79455733    rs4975139    C    T    932.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.439;DB;DP=80;Dels=0.0;FS=3.502;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.223;QD=11.65;ReadPosRankSum=1.881;SNPEFF_AMINO_ACID_CHANGE=L3686;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_79455603_79455769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:48,32:80:99:962,0,1600
4    79455858    rs4975140    T    A    628.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:661,48,0
4    79458112    rs17471104    A    G    827.62    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=57;Dels=0.0;FS=7.049;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=1.846;QD=14.52;ReadPosRankSum=1.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:27,30:57:99:858,0,893
4    79458522    rs17471139    A    G    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.48;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,102
4    79458537    rs6533756    C    A    33.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:64,0,30
4    79460647    rs71775036    GA    G    576.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.586;DB;DP=107;FS=2.842;HRun=16;HaplotypeScore=626.2744;IndelType=D;MQ=55.63;MQ0=0;MQRankSum=2.587;QD=5.34;ReadPosRankSum=1.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    1/1:43,35:107:48.84:618,49,0
4    79462311    rs72659058    T    A    766.36    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DB;DP=45;Dels=0.0;FS=3.183;HRun=4;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=17.03;ReadPosRankSum=-0.655;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264895    GT:AD:DP:GQ:PL    0/1:19,26:45:99:796,0,605
4    79503230    rs1472365    T    C    124.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264908    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
4    79512800    rs10003947    T    A    1592.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514171    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1626,126,0
4    79525716    rs12711028    C    T    112.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264908    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
4    79531038    rs12639656    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264908    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
4    79531186    rs5944    C    T    1274.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DB;DP=43;Dels=0.0;FS=5.543;HRun=2;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=1.571;QD=29.65;ReadPosRankSum=0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264908    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1308,99,0
4    79531308    rs4612    C    T    880.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=30.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503776    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:914,75,0
4    79845007    rs13108247    C    A    1255.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAQR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505735    GT:AD:DP:GQ:PL    1/1:0,37:37:93.31:1288,93,0
4    79847536    rs7664587    C    T    469.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAQR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505735    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:503,39,0
4    80990854    rs7690964    C    T    73.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANTXR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295465    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:105,9,0
4    81189603    rs60963406    A    C    55.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=6.99;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312465    GT:AD:DP:GQ:PL    0/1:4,4:8:85.92:86,0,145
4    81283670    rs11407016    A    AT    136.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;FS=0.0;HRun=9;HaplotypeScore=15.7068;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358105    GT:AD:DP:GQ:PL    0/1:2,6:8:28.05:175,0,28
4    81529380    rs2903671    T    C    272.44    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.193;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.312;QD=11.35;ReadPosRankSum=2.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358105    GT:AD:DP:GQ:PL    0/1:15,9:24:99:302,0,550
4    81529518    rs2867782    T    C    996.55    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.38;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.535;QD=13.84;ReadPosRankSum=0.958;SNPEFF_AMINO_ACID_CHANGE=I122T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_81529487_81529537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508675    GT:AD:DP:GQ:PL    0/1:37,35:72:99:1027,0,1125
4    81561674    rs9994610    C    T    433.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.041;DB;DP=36;Dels=0.0;FS=6.113;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=12.05;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358105    GT:AD:DP:GQ:PL    0/1:18,18:36:99:464,0,613
4    81884610    rs113202615    A    AT    639.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=4;HaplotypeScore=42.9144;IndelType=I;MQ=63.44;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358105    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:682,54,0
4    81884722    rs1052325    G    A    524.07    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.001;QD=11.39;ReadPosRankSum=-1.132;SNPEFF_AMINO_ACID_CHANGE=V220I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_81884671_81884910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358105    GT:AD:DP:GQ:PL    0/1:24,22:46:99:554,0,760
4    81967150    rs3733549    G    A    1791.25    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.125;DB;DP=142;Dels=0.0;FS=3.112;HRun=1;HaplotypeScore=1.5616;MQ=59.38;MQ0=0;MQRankSum=-1.363;QD=12.61;ReadPosRankSum=0.822;SNPEFF_AMINO_ACID_CHANGE=R192Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_81966892_81967802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282701    GT:AD:DP:GQ:PL    0/1:77,65:142:99:1821,0,2127
4    81967188    rs6831040    C    T    5282.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9663;MQ=59.57;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=L205F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_81966892_81967802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282701    GT:AD:DP:GQ:PL    1/1:0,150:150:99:5282,388,0
4    81974809    rs7661611    T    C    90.97    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=51.13;MQ0=0;MQRankSum=-0.194;QD=6.5;ReadPosRankSum=1.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395581    GT:AD:DP:GQ:PL    0/1:8,6:14:99:121,0,219
4    82013619    rs59866145    AAAGGAAGG    A    659.03    PASS    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=74;FS=2.007;HRun=0;HaplotypeScore=558.4909;IndelType=D;MQ=51.88;MQ0=0;MQRankSum=0.521;QD=8.91;ReadPosRankSum=1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264399    GT:AD:DP:GQ:PL    0/1:63,11:74:99:698,0,1149
4    82025691    rs1443544    A    C    38.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.58;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264399    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:68,0,67
4    82366788    rs28560455    C    T    637.15    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=10.8;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264400    GT:AD:DP:GQ:PL    0/1:37,22:59:99:667,0,1298
4    82368633    rs59588994    G    T    414.97    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.339;QD=18.04;ReadPosRankSum=-1.128;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395570    GT:AD:DP:GQ:PL    0/1:7,16:23:99:445,0,222
4    82369160    rs1077802    C    T    378.06    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.586;QD=23.63;ReadPosRankSum=1.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395570    GT:AD:DP:GQ:PL    0/1:5,11:16:99:408,0,163
4    82369205    rs1077803    T    A    668.30    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=3.078;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.51;QD=18.06;ReadPosRankSum=-1.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395570    GT:AD:DP:GQ:PL    0/1:15,22:37:99:698,0,399
4    82369494    rs28409763    G    T    227.79    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.853;QD=10.35;ReadPosRankSum=0.853;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395570    GT:AD:DP:GQ:PL    0/1:14,8:22:99:258,0,518
4    83276386    rs34411705    G    A    102.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=11.41;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503822    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,171
4    83276408    rs55654912    T    C    256.10    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.739;QD=18.29;ReadPosRankSum=-2.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503822    GT:AD:DP:GQ:PL    0/1:6,8:14:99:286,0,204
4    83276430    rs11452290    C    CA    264.40    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=20;FS=3.139;HRun=9;HaplotypeScore=95.6092;IndelType=I;MQ=58.84;MQ0=0;MQRankSum=-1.28;QD=13.22;ReadPosRankSum=-0.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503822    GT:AD:DP:GQ:PL    0/1:9,11:20:99:303,0,151
4    83279722    rs35965249    T    C    206.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.723;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.209;QD=7.66;ReadPosRankSum=-0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503822    GT:AD:DP:GQ:PL    0/1:18,9:27:99:237,0,652
4    83347309    rs34583014    TAAGA    T    1002.62    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=5.487;DB;DP=48;FS=3.026;HRun=0;HaplotypeScore=229.6129;IndelType=D;MQ=59.33;MQ0=0;MQRankSum=0.416;QD=20.89;ReadPosRankSum=-0.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRPDL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295470    GT:AD:DP:GQ:PL    0/1:27,21:48:99:1042,0,2058
4    83369287    rs4285076    A    G    65.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.99;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273920    GT:AD:DP:GQ:PL    0/1:3,3:6:95.93:96,0,108
4    83375719    rs6853622    T    C    198.25    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.135;QD=16.52;ReadPosRankSum=-1.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273920    GT:AD:DP:GQ:PL    0/1:5,7:12:99:228,0,171
4    83411197    rs2276884    T    C    833.74    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=4.658;DB;DP=87;Dels=0.0;FS=2.12;HRun=1;HaplotypeScore=0.9469;MQ=59.3;MQ0=0;MQRankSum=-1.196;QD=9.58;ReadPosRankSum=1.753;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508701    GT:AD:DP:GQ:PL    0/1:53,34:87:99:864,0,1649
4    83411635    rs1543163    A    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449862    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    83552809    rs3857138    A    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319540    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
4    83582211    rs3733227    C    G    3913.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.25;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=E197Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_83581040_83582230;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000273908    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3914,286,0
4    83602150    rs2276883    C    T    351.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273908    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:384,30,0
4    83626382    rs1876218    C    A    321.21    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-1.126;QD=12.85;ReadPosRankSum=-1.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273908    GT:AD:DP:GQ:PL    0/1:12,13:25:99:351,0,421
4    83626674    rs6853042    G    A    231.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273908    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:264,21,0
4    83742336    rs4634209    C    T    412.34    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.507;QD=14.73;ReadPosRankSum=0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264405    GT:AD:DP:GQ:PL    0/1:15,13:28:99:442,0,495
4    83745482    rs11726118    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509691    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    83778839    rs7658703    T    C    835.98    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.785;DB;DP=89;Dels=0.0;FS=1.95;HRun=0;HaplotypeScore=2.9659;MQ=59.74;MQ0=0;MQRankSum=-0.655;QD=9.39;ReadPosRankSum=0.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264405    GT:AD:DP:GQ:PL    0/1:56,33:89:99:866,0,1769
4    83784337    rs7666917    G    A    434.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436790    GT:AD:DP:GQ:PL    1/1:0,14:14:42.09:467,42,0
4    83787845    rs7356522    G    A    2931.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264405    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2964,223,0
4    83788139    rs2290739    C    A    2311.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=37.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503058    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2345,178,0
4    83788344    rs2045478    A    T    1744.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.15;MQ0=0;QD=35.6;SNPEFF_AMINO_ACID_CHANGE=G108;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_83788308_83788469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264405    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1777,135,0
4    83788562    rs2045479    T    C    175.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503058    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
4    83791248    rs11737659    G    A    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503058    GT:AD:DP:GQ:PL    0/1:2,2:4:61.63:68,0,62
4    83791373    rs10015419    C    T    993.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.1738;MQ=59.28;MQ0=0;QD=31.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503058    GT:AD:DP:GQ:PL    1/1:0,32:32:78.24:1026,78,0
4    83791649    rs3762902    G    T    1011.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503058    GT:AD:DP:GQ:PL    1/1:0,31:31:87.27:1045,87,0
4    83792498    rs7685043    G    T    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503058    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
4    83792555    rs7686508    C    A    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_AMINO_ACID_CHANGE=D22Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_83792521_83793103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264405    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    83793243    rs4693525    A    C    555.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507340    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:589,45,0
4    83795806    rs10025654    T    C    1043.95    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.455;DB;DP=84;Dels=0.0;FS=1.787;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=12.43;ReadPosRankSum=0.633;SNPEFF_AMINO_ACID_CHANGE=R170;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_83795764_83795904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503058    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1074,0,1222
4    83796078    rs10025880    T    C    98.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503210    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:131,12,0
4    83800181    rs1531240    A    G    206.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505434    GT:AD:DP:GQ:PL    1/1:0,6:7:18.06:240,18,0
4    83801849    rs6820324    G    A    564.32    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.863;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=19.46;ReadPosRankSum=0.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505434    GT:AD:DP:GQ:PL    0/1:12,17:29:99:594,0,405
4    83827822    rs3214025    A    G    534.64    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.175;DB;DP=37;Dels=0.0;FS=12.781;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=14.45;ReadPosRankSum=0.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505905    GT:AD:DP:GQ:PL    0/1:21,16:37:99:565,0,605
4    83838217    rs1031639    G    A    2878.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=M284I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_83838097_83841122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=THAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302236    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2911,223,0
4    83838262    rs897945    G    T    1297.96    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.95;DB;DP=87;Dels=0.0;FS=10.787;HRun=3;HaplotypeScore=1.5777;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=14.92;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=L299F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_83838097_83841122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=THAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302236    GT:AD:DP:GQ:PL    0/1:43,44:87:99:1328,0,1422
4    83839799    rs6535411    A    G    1631.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=N812D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_83838097_83841122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=THAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302236    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1665,123,0
4    83849581    rs6535412    A    G    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340417    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
4    83852065    rs985899    G    A    1821.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340417    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1855,138,0
4    83857402    rs6535415    T    C    302.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340417    GT:AD:DP:GQ:PL    1/1:0,13:13:27.08:335,27,0
4    83860527    rs921992    A    G    92.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.61;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340417    GT:AD:DP:GQ:PL    0/1:4,4:8:99:123,0,145
4    83900043    rs6535422    A    G    2997.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=34.45;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=V267;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_83900036_83900159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIN54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340417    GT:AD:DP:GQ:PL    1/1:1,86:87:99:3030,229,0
4    83900260    rs7674484    A    G    847.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.25;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340417    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:881,66,0
4    83905258    rs9994716    C    G    401.44    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.723;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=15.44;ReadPosRankSum=-0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509748    GT:AD:DP:GQ:PL    0/1:12,14:26:99:431,0,391
4    83966610    rs4693553    T    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264389    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    83977947    rs2868739    A    G    164.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264389    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:197,18,0
4    83977975    rs6535432    C    T    452.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264389    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:485,36,0
4    83989516    rs2868747    T    C    842.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264389    GT:AD:DP:GQ:PL    1/1:0,24:24:72.20:875,72,0
4    83989571    rs5859858    G    GT    569.06    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.807;DB;DP=35;FS=1.617;HRun=9;HaplotypeScore=120.8037;IndelType=I;MQ=58.65;MQ0=0;MQRankSum=0.022;QD=16.26;ReadPosRankSum=1.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264389    GT:AD:DP:GQ:PL    0/1:13,22:35:99:608,0,142
4    84028838    rs4693563    G    A    94.10    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.55;QD=11.76;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311507    GT:AD:DP:GQ:PL    0/1:3,5:8:98.23:124,0,98
4    84189012    rs11448409    G    GT    248.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=7;HaplotypeScore=18.9021;IndelType=I;MQ=60.0;MQ0=0;QD=24.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311461    GT:AD:DP:GQ:PL    1/1:2,8:10:24.07:290,24,0
4    84190901    rs6852861    T    C    868.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514935    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:902,66,0
4    84191031    rs6535454    A    G    3014.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=35.05;SNPEFF_AMINO_ACID_CHANGE=D248;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84191013_84191146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311461    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3047,232,0
4    84193366    rs6841889    C    T    749.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=37.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514935    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:783,57,0
4    84205872    rs6818847    C    A    357.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=V16L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84205665_84205918;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311461    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:391,30,0
4    84216845    rs4518235    G    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
4    84223455    rs79283285    A    G    399.76    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.2;MQ0=0;MQRankSum=0.851;QD=13.78;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:15,14:29:99:430,0,470
4    84223461    rs4285078    G    C    991.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1024,75,0
4    84229897    rs4453925    T    C    525.24    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.544;QD=17.51;ReadPosRankSum=-0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:13,17:30:99:555,0,445
4    84230033    rs139839221    C    T    787.51    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=1.029;DB;DP=79;Dels=0.0;FS=1.994;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.557;QD=9.97;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=A294;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84229998_84230104;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513463    GT:AD:DP:GQ:PL    0/1:48,31:79:99:818,0,1290
4    84230619    rs11099592    T    C    938.06    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6203;MQ=58.98;MQ0=0;MQRankSum=0.372;QD=13.8;ReadPosRankSum=-1.935;SNPEFF_AMINO_ACID_CHANGE=K249R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84230555_84230648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000513463    GT:AD:DP:GQ:PL    0/1:30,38:68:99:968,0,898
4    84231013    rs11732892    T    A    61.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=8.79;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:4,3:7:91.50:92,0,143
4    84232104    rs6535455    T    C    120.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=8.05;ReadPosRankSum=1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:10,5:15:99:151,0,366
4    84234229    rs6840520    G    A    378.80    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=41;Dels=0.0;FS=1.528;HRun=1;HaplotypeScore=2.9986;MQ=54.72;MQ0=0;MQRankSum=0.381;QD=9.24;ReadPosRankSum=0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:23,18:41:99:409,0,595
4    84240328    rs55826538    A    AC    279.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=23.3522;IndelType=I;MQ=62.65;MQ0=0;MQRankSum=-0.825;QD=23.29;ReadPosRankSum=-2.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:3,9:12:50.87:318,0,51
4    84240654    rs12501123    G    A    539.63    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.139;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.417;QD=20.75;ReadPosRankSum=1.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:8,18:26:99:570,0,263
4    84240680    rs12501124    G    T    380.93    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.685;QD=22.41;ReadPosRankSum=0.685;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:5,12:17:99:411,0,161
4    84243549    rs4328905    A    G    282.61    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=18.84;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311412    GT:AD:DP:GQ:PL    0/1:6,9:15:99:313,0,159
4    84347363    rs4693624    A    G    111.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=12.42;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:5,4:9:99:142,0,170
4    84353154    rs2047210    T    C    81.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:111,0,30
4    84362443    rs4693088    T    G    470.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=28;Dels=0.0;FS=7.067;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=1.834;QD=16.8;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:12,16:28:99:500,0,381
4    84364751    rs7665103    A    G    501.90    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=33;Dels=0.0;FS=1.624;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.162;QD=15.21;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=I427;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84364670_84364767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510985    GT:AD:DP:GQ:PL    0/1:16,17:33:99:532,0,502
4    84364808    rs6535473    T    C    182.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=13.07;ReadPosRankSum=0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:8,6:14:99:213,0,248
4    84367050    rs11099599    G    A    300.07    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=23.08;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:4,9:13:99:330,0,117
4    84367286    rs11099600    G    A    510.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.255;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=-0.888;QD=21.26;ReadPosRankSum=0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:8,16:24:99:540,0,254
4    84370091    rs13141136    A    G    399.07    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.181;DB;DP=31;Dels=0.0;FS=3.698;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=-0.62;QD=12.87;ReadPosRankSum=-2.622;SNPEFF_AMINO_ACID_CHANGE=L346;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84369936_84370114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:18,13:31:99:429,0,567
4    84370124    rs11348140    TA    T    131.64    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=3.224;DB;DP=22;FS=3.274;HRun=11;HaplotypeScore=81.5535;IndelType=D;MQ=58.17;MQ0=0;MQRankSum=0.625;QD=5.98;ReadPosRankSum=0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440639    GT:AD:DP:GQ:PL    0/1:13,9:22:99:171,0,204
4    84374480    rs1494961    C    T    963.26    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.155;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.067;QD=14.82;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=V306I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84374384_84375098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:32,33:65:99:993,0,977
4    84376743    rs6831595    A    T    3686.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.16;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=V35E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84376550_84377009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    1/1:0,108:110:99:3686,280,0
4    84376794    rs141700135    T    C    1299.01    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=0.206;DB;DP=107;Dels=0.0;FS=3.933;HRun=0;HaplotypeScore=0.7887;MQ=59.78;MQ0=0;MQRankSum=-1.109;QD=12.14;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=N18S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84376550_84377009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295488    GT:AD:DP:GQ:PL    0/1:61,46:107:99:1329,0,1723
4    84380955    rs12505955    G    T    739.33    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=4.317;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=60.17;MQ0=0;MQRankSum=-1.199;QD=11.92;ReadPosRankSum=0.861;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321945    GT:AD:DP:GQ:PL    0/1:33,29:62:99:769,0,993
4    84381035    rs34365268    CA    C    270.17    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=19;FS=0.0;HRun=3;HaplotypeScore=62.2285;IndelType=D;MQ=60.57;MQ0=0;MQRankSum=-0.367;QD=14.22;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321945    GT:AD:DP:GQ:PL    0/1:9,10:19:99:309,0,332
4    84382058    rs34734728    CA    C    171.94    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=2.963;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=56.5735;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=8.19;ReadPosRankSum=-0.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321945    GT:AD:DP:GQ:PL    0/1:10,11:21:99:211,0,228
4    84382552    rs1126971    A    T    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504777    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
4    84383810    rs12642536    C    T    1200.69    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.554;DB;DP=92;Dels=0.0;FS=1.762;HRun=3;HaplotypeScore=2.362;MQ=59.55;MQ0=0;MQRankSum=-0.73;QD=13.05;ReadPosRankSum=1.36;SNPEFF_AMINO_ACID_CHANGE=A299T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84383162_84384055;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506553    GT:AD:DP:GQ:PL    0/1:48,44:92:99:1231,0,1528
4    84384412    rs11099602    G    C    49.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRPS18C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295491    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    84384688    rs114513239    C    T    1935.62    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=142;Dels=0.0;FS=7.528;HRun=1;HaplotypeScore=0.9734;MQ=59.84;MQ0=0;MQRankSum=-0.787;QD=13.63;ReadPosRankSum=-0.656;SNPEFF_AMINO_ACID_CHANGE=R203Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84384647_84384761;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506553    GT:AD:DP:GQ:PL    0/1:76,66:142:99:1966,0,2187
4    84403491    rs35608460    A    AG    377.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=54.2224;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=17.17;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321945    GT:AD:DP:GQ:PL    0/1:11,11:22:99:417,0,399
4    84458028    rs56139069    C    G    72.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8658;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.46;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264409    GT:AD:DP:GQ:PL    0/1:2,3:5:53.65:102,0,54
4    84465613    rs10516690    C    T    1071.12    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.706;DB;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=59.53;MQ0=0;MQRankSum=0.981;QD=12.17;ReadPosRankSum=-2.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264409    GT:AD:DP:GQ:PL    0/1:51,37:88:99:1101,0,1807
4    84465855    rs28360718    A    C    179.30    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=6.9;ReadPosRankSum=1.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506766    GT:AD:DP:GQ:PL    0/1:19,7:26:99:209,0,693
4    84503125    rs41314942    A    G    173.48    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.122;QD=10.2;ReadPosRankSum=-0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264409    GT:AD:DP:GQ:PL    0/1:7,10:17:99:203,0,241
4    84503126    rs1674348    A    C    173.48    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.049;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=10.2;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264409    GT:AD:DP:GQ:PL    0/1:7,10:17:99:203,0,241
4    84509465    rs11394944    T    TG    1529.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=61.5825;IndelType=I;MQ=60.33;MQ0=0;QD=46.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264409    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1571,99,0
4    84511427    .    G    A    197.88    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DP=22;Dels=0.0;FS=1.719;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.32;QD=8.99;ReadPosRankSum=-1.173;SNPEFF_AMINO_ACID_CHANGE=T240;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_84511352_84511445;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264409    GT:AD:DP:GQ:PL    0/1:13,9:22:99:228,0,392
4    84515968    rs3733327    C    T    1869.67    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.959;DB;DP=117;Dels=0.0;FS=9.116;HRun=0;HaplotypeScore=1.99;MQ=60.0;MQ0=0;MQRankSum=-2.135;QD=15.98;ReadPosRankSum=1.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264409    GT:AD:DP:GQ:PL    0/1:57,60:117:99:1900,0,1816
4    84518558    rs3733329    C    T    777.15    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.22;DB;DP=48;Dels=0.0;FS=4.962;HRun=0;HaplotypeScore=0.9159;MQ=59.52;MQ0=0;MQRankSum=1.851;QD=16.19;ReadPosRankSum=-0.345;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513683    GT:AD:DP:GQ:PL    0/1:20,28:48:99:807,0,616
4    84519076    rs1379974    A    G    463.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513683    GT:AD:DP:GQ:PL    1/1:0,15:15:45.10:497,45,0
4    84519639    rs781434    T    G    209.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513683    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
4    84519775    rs71668661    AT    A    500.27    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.946;DB;DP=91;FS=9.014;HRun=14;HaplotypeScore=320.2918;IndelType=D;MQ=53.08;MQ0=0;MQRankSum=-0.046;QD=5.5;ReadPosRankSum=0.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513683    GT:AD:DP:GQ:PL    0/1:50,38:91:99:539,0,904
4    84525973    rs35602893    CT    C    294.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=7;HaplotypeScore=35.2945;IndelType=D;MQ=58.29;MQ0=0;QD=26.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGPAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509044    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:337,33,0
4    85165279    rs348702    G    C    754.70    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=63;Dels=0.0;FS=3.505;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.739;QD=11.98;ReadPosRankSum=-0.488;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510707    GT:AD:DP:GQ:PL    0/1:32,31:63:99:785,0,935
4    85165381    rs348701    G    A    880    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=38.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510707    GT:AD:DP:GQ:PL    1/1:0,23:23:69.20:913,69,0
4    85166020    rs348700    C    T    533.23    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.601;DB;DP=32;Dels=0.0;FS=6.057;HRun=2;HaplotypeScore=0.0;MQ=58.23;MQ0=0;MQRankSum=0.954;QD=16.66;ReadPosRankSum=-1.615;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510707    GT:AD:DP:GQ:PL    0/1:12,20:32:99:563,0,381
4    85414741    rs13123447    C    T    384.42    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.047;DB;DP=24;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=1.9846;MQ=58.24;MQ0=0;MQRankSum=0.154;QD=16.02;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX6-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295886    GT:AD:DP:GQ:PL    0/1:11,12:24:99:414,0,257
4    85416737    rs10549802    GGT    G    182.92    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=79.0654;IndelType=D;MQ=56.48;MQ0=0;MQRankSum=-0.715;QD=10.76;ReadPosRankSum=-0.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX6-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295886    GT:AD:DP:GQ:PL    0/1:9,7:17:99:222,0,246
4    85416797    rs2278671    T    G    460.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=59.16;MQ0=0;MQRankSum=0.775;QD=10.97;ReadPosRankSum=-1.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX6-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295886    GT:AD:DP:GQ:PL    0/1:24,18:42:99:491,0,677
4    85530796    rs17009168    A    C    75.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=6.32;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295887    GT:AD:DP:GQ:PL    0/1:8,4:12:99:106,0,296
4    85540814    rs6853486    T    C    52.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=5.81;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511298    GT:AD:DP:GQ:PL    0/1:5,4:9:82.25:82,0,181
4    85552882    rs41282379    G    T    616.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.026;QD=22.03;ReadPosRankSum=0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295887    GT:AD:DP:GQ:PL    0/1:9,18:28:99:647,0,284
4    85555196    rs13102661    G    A    315.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295887    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:349,27,0
4    85612575    rs3747681    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514711    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:79,6,0
4    85625701    rs1838039    A    G    539.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:573,42,0
4    85626818    rs2218323    A    G    148.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=24.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:181,15,0
4    85634144    rs17009212    C    A    291.62    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.939;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.339;QD=12.68;ReadPosRankSum=-0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    0/1:12,11:23:99:322,0,429
4    85642327    rs56928172    A    C    70.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.11;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    0/1:2,3:5:66.24:101,0,66
4    85642328    rs16995917    G    C    36.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    0/1:3,2:5:66.84:67,0,77
4    85657280    rs77543638    C    T    304.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.26;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.03;MQ0=0;MQRankSum=-0.664;QD=12.7;ReadPosRankSum=-0.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    0/1:12,12:24:99:335,0,432
4    85710822    .    ACC    A    265.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.239;DP=14;FS=0.0;HRun=6;HaplotypeScore=86.1912;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=-0.825;QD=18.94;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    1/1:9,5:14:15.15:307,15,0
4    85730914    rs6531775    T    C    69.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=56.62;MQ0=0;MQRankSum=-0.406;QD=9.87;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,106
4    85731636    rs10516729    A    G    40.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
4    85762385    rs2046402    T    C    881.60    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=55;Dels=0.0;FS=1.274;HRun=1;HaplotypeScore=1.9887;MQ=60.0;MQ0=0;MQRankSum=-0.025;QD=16.03;ReadPosRankSum=0.598;SNPEFF_AMINO_ACID_CHANGE=L112;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_85762307_85762416;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295888    GT:AD:DP:GQ:PL    0/1:27,28:55:99:912,0,913
4    85770794    rs1872321    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504990    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    86844835    rs6824722    A    G    504.71    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.127;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.826;QD=21.03;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=E101;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_86844801_86844923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395184    GT:AD:DP:GQ:PL    0/1:7,17:24:99:535,0,225
4    86852207    rs60002814    AT    A    425.44    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=3.809;DB;DP=27;FS=6.532;HRun=1;HaplotypeScore=73.1601;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=15.76;ReadPosRankSum=-0.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264343    GT:AD:DP:GQ:PL    0/1:14,13:27:99:464,0,574
4    86863206    rs35049916    CT    C    71.46    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;FS=0.0;HRun=9;HaplotypeScore=23.6885;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=-0.361;QD=7.94;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264343    GT:AD:DP:GQ:PL    0/1:4,5:9:90.05:110,0,90
4    86863467    rs11097083    T    A    169.85    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.146;QD=6.79;ReadPosRankSum=-0.786;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512201    GT:AD:DP:GQ:PL    0/1:17,8:25:99:200,0,602
4    86915848    rs10003909    T    C    2375.65    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.41;DB;DP=162;Dels=0.0;FS=1.943;HRun=0;HaplotypeScore=1.9331;MQ=59.86;MQ0=0;MQRankSum=-0.032;QD=14.66;ReadPosRankSum=1.868;SNPEFF_AMINO_ACID_CHANGE=N252;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_86915736_86916810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395183    GT:AD:DP:GQ:PL    0/1:79,82:162:99:2406,0,2601
4    86915923    rs11547776    G    A    3345.40    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.921;DB;DP=226;Dels=0.0;FS=4.997;HRun=0;HaplotypeScore=4.1112;MQ=59.59;MQ0=0;MQRankSum=0.626;QD=14.8;ReadPosRankSum=-0.205;SNPEFF_AMINO_ACID_CHANGE=R277;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_86915736_86916810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395183    GT:AD:DP:GQ:PL    0/1:116,110:226:99:3345,0,3683
4    86921612    rs12505097    C    G    922.43    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=77;Dels=0.0;FS=4.876;HRun=0;HaplotypeScore=6.8633;MQ=57.25;MQ0=0;MQRankSum=1.206;QD=11.98;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264343    GT:AD:DP:GQ:PL    0/1:36,41:77:99:952,0,930
4    87024228    rs112946101    C    CTGTG    433.56    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=128.3884;IndelType=I;MQ=53.92;MQ0=1;MQRankSum=-0.668;QD=21.68;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475679    GT:AD:DP:GQ:PL    0/1:15,5:19:8.73:472,0,9
4    87024409    rs28529458    T    C    1060.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.14;MQ0=0;QD=31.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475679    GT:AD:DP:GQ:PL    1/1:0,34:34:93.25:1093,93,0
4    87622874    .    C    T    2033.20    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.898;DP=147;Dels=0.0;FS=8.522;HRun=1;HaplotypeScore=4.7739;MQ=59.84;MQ0=0;MQRankSum=1.688;QD=13.83;ReadPosRankSum=-0.329;SNPEFF_AMINO_ACID_CHANGE=S340L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_87622394_87622954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357349    GT:AD:DP:GQ:PL    0/1:75,72:147:99:2063,0,2487
4    87643746    rs67867077    G    A    60.70    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=6.07;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316707    GT:AD:DP:GQ:PL    0/1:7,3:10:90.69:91,0,262
4    87666225    rs61750815    A    G    1328.82    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=91;Dels=0.0;FS=8.428;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.25;QD=14.6;ReadPosRankSum=0.036;SNPEFF_AMINO_ACID_CHANGE=H833R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_87666119_87666281;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357349    GT:AD:DP:GQ:PL    0/1:46,45:91:99:1359,0,1421
4    87679642    rs1420624    A    C    319.36    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.143;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.551;QD=19.96;ReadPosRankSum=-2.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316707    GT:AD:DP:GQ:PL    0/1:5,11:16:99:349,0,115
4    87684031    rs710832    A    G    1393.08    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.636;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7485;MQ=59.56;MQ0=0;MQRankSum=-1.165;QD=13.27;ReadPosRankSum=-0.327;SNPEFF_AMINO_ACID_CHANGE=P1044;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_87683880_87684343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316707    GT:AD:DP:GQ:PL    0/1:53,51:105:99:1423,0,1653
4    87690998    rs2230600    A    G    1625.78    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=2.557;DB;DP=114;Dels=0.0;FS=1.738;HRun=0;HaplotypeScore=0.734;MQ=59.6;MQ0=0;MQRankSum=0.732;QD=14.26;ReadPosRankSum=0.544;SNPEFF_AMINO_ACID_CHANGE=I1331M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_87690922_87691136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316707    GT:AD:DP:GQ:PL    0/1:59,55:114:99:1656,0,1806
4    87692129    rs17420966    T    G    35.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511105    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:66,0,33
4    87706506    rs989902    T    G    823.41    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.697;DB;DP=47;Dels=0.0;FS=2.779;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.055;QD=17.52;ReadPosRankSum=1.141;SNPEFF_AMINO_ACID_CHANGE=Y1890D;SNPEFF_CODON_CHANGE=Tac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_87706384_87706521;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316707    GT:AD:DP:GQ:PL    0/1:22,25:47:99:853,0,684
4    87728676    rs17694112    A    C    1166.32    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DB;DP=81;Dels=0.0;FS=8.247;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.864;QD=14.4;ReadPosRankSum=-0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316707    GT:AD:DP:GQ:PL    0/1:41,40:81:99:1196,0,1372
4    87731238    rs11930396    G    A    139.62    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=10.74;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316707    GT:AD:DP:GQ:PL    0/1:8,5:13:99:170,0,277
4    87754419    rs10050311    C    T    632.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.692;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.224;QD=13.18;ReadPosRankSum=0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273905    GT:AD:DP:GQ:PL    0/1:24,24:48:99:663,0,686
4    87754713    rs7678571    G    A    107.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=13.42;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273905    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,144
4    87769661    rs6531936    G    A    151.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273905    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:184,15,0
4    87769694    rs6531937    A    C    369.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273905    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:402,33,0
4    87770462    rs4693788    A    G    104.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=26.21;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273905    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:137,12,0
4    87809387    rs1550931    G    T    2126.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=S36Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_87809274_87809428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295898    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2160,169,0
4    87812564    rs10011798    G    C    1141.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295898    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1174,90,0
4    87812586    rs113468701    TA    T    829.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=12;HaplotypeScore=315.9959;IndelType=D;MQ=59.67;MQ0=0;QD=20.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295898    GT:AD:DP:GQ:PL    1/1:3,38:41:99:872,114,0
4    87812810    rs35305216    G    GA    240.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=7;HaplotypeScore=28.7118;IndelType=I;MQ=60.0;MQ0=0;QD=24.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295898    GT:AD:DP:GQ:PL    1/1:4,6:10:24.07:282,24,0
4    87957989    rs340629    T    C    669.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=25.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307808    GT:AD:DP:GQ:PL    1/1:0,26:26:60.13:703,60,0
4    87968798    rs6854749    A    T    1229.51    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.524;DB;DP=76;Dels=0.0;FS=1.958;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.478;QD=16.18;ReadPosRankSum=-0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511442    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1260,0,1220
4    87968979    rs58633957    G    T    154.88    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=9.11;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511442    GT:AD:DP:GQ:PL    0/1:10,7:17:99:185,0,358
4    88029482    rs3733377    C    G    712.99    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=59.56;MQ0=0;MQRankSum=-1.11;QD=13.71;ReadPosRankSum=1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395142    GT:AD:DP:GQ:PL    0/1:23,29:52:99:743,0,691
4    88048315    rs112686186    GC    G    963.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.286;DB;DP=38;FS=0.0;HRun=1;HaplotypeScore=290.5118;IndelType=D;MQ=50.97;MQ0=0;MQRankSum=1.659;QD=25.37;ReadPosRankSum=-0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503369    GT:AD:DP:GQ:PL    1/1:23,15:38:48.20:1006,48,0
4    88048327    rs146011121    CA    C    720.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=1;HaplotypeScore=260.5794;IndelType=D;MQ=48.3;MQ0=0;QD=25.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503369    GT:AD:DP:GQ:PL    1/1:14,14:28:75.21:762,75,0
4    88048863    rs62306540    T    C    424.67    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.812;DB;DP=37;Dels=0.0;FS=5.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=11.48;ReadPosRankSum=0.366;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503369    GT:AD:DP:GQ:PL    0/1:20,17:37:99:455,0,683
4    88052219    rs342467    T    C    2108.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307808    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2142,165,0
4    88052492    rs13103234    T    C    336.82    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=17.73;ReadPosRankSum=-2.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307808    GT:AD:DP:GQ:PL    0/1:8,11:19:99:367,0,270
4    88053085    rs342466    C    T    670.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307808    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:703,54,0
4    88055554    rs1037813    C    T    2609.81    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.192;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=59.71;MQ0=0;MQRankSum=-0.149;QD=18.0;ReadPosRankSum=-2.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307808    GT:AD:DP:GQ:PL    0/1:62,82:145:99:2640,0,2022
4    88056719    rs71660117    GT    G    156.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=8;HaplotypeScore=18.2357;IndelType=D;MQ=63.02;MQ0=0;QD=22.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307808    GT:AD:DP:GQ:PL    1/1:0,7:7:21.03:199,21,0
4    88056925    rs342464    A    G    382.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307808    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:415,30,0
4    88226533    rs7692397    C    A    94.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=7.88;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302219    GT:AD:DP:GQ:PL    0/1:8,4:12:99:125,0,239
4    88231338    .    GC    G    116.32    PASS    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=1.617;DP=43;FS=9.286;HRun=1;HaplotypeScore=276.6668;IndelType=D;MQ=56.21;MQ0=0;MQRankSum=-1.061;QD=2.71;ReadPosRankSum=1.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302219    GT:AD:DP:GQ:PL    0/1:38,5:43:99:155,0,518
4    88231339    rs149853767    CA    C    335.31    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=1.291;DB;DP=43;FS=0.0;HRun=10;HaplotypeScore=256.9539;IndelType=D;MQ=56.21;MQ0=0;MQRankSum=0.783;QD=7.8;ReadPosRankSum=1.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302219    GT:AD:DP:GQ:PL    0/1:26,17:43:99:374,0,283
4    88234874    rs7698974    C    T    232.60    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.144;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=13.68;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302219    GT:AD:DP:GQ:PL    0/1:9,8:17:99:263,0,275
4    88238448    rs6531975    A    G    248.45    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.6;QD=17.75;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302219    GT:AD:DP:GQ:PL    0/1:5,9:14:99:278,0,164
4    88258483    rs9991501    T    C    2542.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=29.91;SNPEFF_AMINO_ACID_CHANGE=Q239R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88258427_88258518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507286    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2575,205,0
4    88261828    rs7679024    A    C    392.56    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.385;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.128;QD=10.07;ReadPosRankSum=2.641;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358290    GT:AD:DP:GQ:PL    0/1:23,16:39:99:423,0,680
4    88296051    .    A    AT    341.75    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.809;DP=60;FS=0.0;HRun=12;HaplotypeScore=251.5029;IndelType=I;MQ=57.45;MQ0=0;MQRankSum=-1.145;QD=5.7;ReadPosRankSum=-0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358290    GT:AD:DP:GQ:PL    0/1:41,17:60:99:381,0,403
4    88312293    rs28654511    A    T    125.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=25.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508413    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
4    88356111    rs28736552    T    C    1730.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302174    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1763,129,0
4    88362904    rs13104303    C    T    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302174    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
4    88378818    rs28624955    A    G    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502933    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    88401616    rs9933    A    G    1993.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_AMINO_ACID_CHANGE=D450;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88401524_88401672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438050    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2026,147,0
4    88401735    rs34452129    CTA    C    519.58    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.423;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=65.6567;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.371;QD=24.74;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282470    GT:AD:DP:GQ:PL    0/1:7,14:21:99:559,0,277
4    88403823    rs6857504    T    G    113.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.96;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282470    GT:AD:DP:GQ:PL    0/1:2,4:6:64.40:144,0,64
4    88413024    rs56273319    A    G    103.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434434    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:136,12,0
4    88415636    rs1049544    G    C    1045.83    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.88;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.74;MQ0=0;MQRankSum=-0.485;QD=14.33;ReadPosRankSum=-0.331;SNPEFF_AMINO_ACID_CHANGE=H106D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88414734_88415750;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282470    GT:AD:DP:GQ:PL    0/1:32,41:73:99:1076,0,952
4    88416188    rs13051    G    T    1101.50    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.804;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9198;MQ=59.75;MQ0=0;MQRankSum=0.392;QD=11.97;ReadPosRankSum=1.087;SNPEFF_AMINO_ACID_CHANGE=A49D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88416133_88416279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282470    GT:AD:DP:GQ:PL    0/1:55,37:92:99:1131,0,1587
4    88416223    rs8342    A    G    2437.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=P37;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88416133_88416279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282470    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2470,199,0
4    88532182    rs34099745    A    AGTGT    546.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=174.7754;IndelType=I;MQ=53.02;MQ0=2;MQRankSum=1.203;QD=21.87;ReadPosRankSum=-1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282478    GT:AD:DP:GQ:PL    1/1:12,8:23:33.47:589,33,0
4    88533441    rs13131929    T    C    153.02    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=25;Dels=0.0;FS=4.224;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=6.12;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282478    GT:AD:DP:GQ:PL    0/1:18,7:25:99:183,0,567
4    88534235    rs2736982    A    G    481.13    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.512;QD=12.66;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=S299;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88533474_88534460;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282478    GT:AD:DP:GQ:PL    0/1:20,18:38:99:511,0,683
4    88577573    rs2615480    A    G    499.30    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.986;DB;DP=41;Dels=0.0;FS=4.643;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.474;QD=12.18;ReadPosRankSum=-0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282479    GT:AD:DP:GQ:PL    0/1:21,20:41:99:529,0,772
4    88578310    rs2615479    A    G    360.38    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=27.72;ReadPosRankSum=1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282479    GT:AD:DP:GQ:PL    0/1:2,11:13:40.84:390,0,41
4    88583135    rs10019009    A    T    837.19    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=1.5;QD=14.69;ReadPosRankSum=-1.005;SNPEFF_AMINO_ACID_CHANGE=S53C;SNPEFF_CODON_CHANGE=Agc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88583114_88585513;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282479    GT:AD:DP:GQ:PL    0/1:25,32:57:99:867,0,814
4    88584185    rs140275311    C    T    1585.85    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.544;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.45;MQ0=0;MQRankSum=-0.505;QD=18.88;ReadPosRankSum=0.323;SNPEFF_AMINO_ACID_CHANGE=P403S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88583114_88585513;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282479    GT:AD:DP:GQ:PL    0/1:30,53:84:99:1616,0,875
4    88732453    rs4693183    C    T    466.31    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.068;QD=18.65;ReadPosRankSum=0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226284    GT:AD:DP:GQ:PL    0/1:11,14:25:99:496,0,377
4    88732531    rs4693878    T    C    429.39    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.476;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.77;QD=11.61;ReadPosRankSum=1.701;SNPEFF_AMINO_ACID_CHANGE=N141;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88732514_88733074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBSP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226284    GT:AD:DP:GQ:PL    0/1:21,16:37:99:459,0,646
4    88732692    rs1054627    G    A    1029.47    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.798;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.17;MQ0=0;MQRankSum=-2.009;QD=18.38;ReadPosRankSum=0.982;SNPEFF_AMINO_ACID_CHANGE=G195E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88732514_88733074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBSP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226284    GT:AD:DP:GQ:PL    0/1:19,37:56:99:1059,0,534
4    88732746    rs13144371    A    G    700.05    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.746;DB;DP=51;Dels=0.0;FS=1.082;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.84;QD=13.73;ReadPosRankSum=-1.67;SNPEFF_AMINO_ACID_CHANGE=D213G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88732514_88733074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBSP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226284    GT:AD:DP:GQ:PL    0/1:24,27:51:99:730,0,673
4    88732918    rs1054629    A    T    570.67    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.382;DB;DP=50;Dels=0.0;FS=1.088;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.195;QD=11.41;ReadPosRankSum=-0.818;SNPEFF_AMINO_ACID_CHANGE=E270D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88732514_88733074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBSP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226284    GT:AD:DP:GQ:PL    0/1:27,23:50:99:601,0,928
4    88755828    rs7698623    T    C    978.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361056    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:1012,75,0
4    88759690    rs6835632    T    C    328.67    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.718;DB;DP=19;Dels=0.0;FS=2.935;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=17.3;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361056    GT:AD:DP:GQ:PL    0/1:7,12:19:99:359,0,245
4    88767008    rs17013285    G    A    721.13    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.759;DB;DP=58;Dels=0.0;FS=1.037;HRun=0;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=-1.319;QD=12.43;ReadPosRankSum=1.942;SNPEFF_AMINO_ACID_CHANGE=V217I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88766129_88767969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEPE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540395    GT:AD:DP:GQ:PL    0/1:31,27:58:99:751,0,950
4    88812784    rs4550881    A    C    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC093768.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505987    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,68
4    88813269    rs71594826    G    GC    2527.76    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=11.007;DB;DP=171;FS=0.574;HRun=1;HaplotypeScore=877.536;IndelType=I;MQ=56.16;MQ0=0;MQRankSum=-0.764;QD=14.78;ReadPosRankSum=1.723;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC093768.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505987    GT:AD:DP:GQ:PL    0/1:100,69:171:99:2567,0,2949
4    88813271    rs35753589    A    AATT    4806.48    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=10.219;DB;DP=168;FS=0.0;HRun=0;HaplotypeScore=861.141;IndelType=I;MQ=56.01;MQ0=0;MQRankSum=-1.412;QD=28.61;ReadPosRankSum=1.376;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC093768.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505987    GT:AD:DP:GQ:PL    0/1:93,72:168:99:4806,0,4476
4    88813503    rs6532031    T    C    6602.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=197;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5659;MQ=58.56;MQ0=0;QD=33.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC093768.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505987    GT:AD:DP:GQ:PL    1/1:0,197:197:99:6602,491,0
4    88813875    rs3828554    T    C    1644.93    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.03;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=59.25;MQ0=0;MQRankSum=-0.28;QD=13.37;ReadPosRankSum=-0.275;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC093768.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505987    GT:AD:DP:GQ:PL    0/1:64,58:123:99:1675,0,1949
4    88815438    .    AC    A    102.27    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.129;DP=31;FS=0.0;HRun=1;HaplotypeScore=254.4522;IndelType=D;MQ=48.4;MQ0=0;MQRankSum=-2.955;QD=3.1;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC093768.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505987    GT:AD:DP:GQ:PL    0/1:22,11:31:99:141,0,250
4    88815551    rs1824699    T    C    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.16;MQ0=0;MQRankSum=-1.026;QD=9.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC093768.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505987    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:67,0,71
4    88902692    rs4754    T    C    2053.18    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.402;DB;DP=170;Dels=0.0;FS=1.955;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.059;QD=12.08;ReadPosRankSum=0.151;SNPEFF_AMINO_ACID_CHANGE=D53;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88902627_88902950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508233    GT:AD:DP:GQ:PL    0/1:93,76:170:99:2083,0,2820
4    88903853    rs1126616    C    T    912.09    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.862;DB;DP=69;Dels=0.0;FS=2.038;HRun=0;HaplotypeScore=0.8941;MQ=59.67;MQ0=0;MQRankSum=-0.135;QD=13.22;ReadPosRankSum=1.182;SNPEFF_AMINO_ACID_CHANGE=A209;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_88903644_88903950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508233    GT:AD:DP:GQ:PL    0/1:38,31:69:99:942,0,1145
4    88959381    rs2725221    G    A    1334.67    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.235;QD=14.51;ReadPosRankSum=0.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237596    GT:AD:DP:GQ:PL    0/1:49,42:92:99:1365,0,1405
4    88973427    rs2725210    A    G    37.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237596    GT:AD:DP:GQ:PL    0/1:2,2:4:67.17:67,0,71
4    88986745    rs11404312    C    CT    180.85    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DB;DP=45;FS=1.623;HRun=15;HaplotypeScore=332.4027;IndelType=I;MQ=55.21;MQ0=0;MQRankSum=-0.354;QD=4.02;ReadPosRankSum=0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237596    GT:AD:DP:GQ:PL    0/1:32,9:45:99:220,0,125
4    88995795    rs2725203    T    C    106.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.75;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237596    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:137,0,67
4    88997102    rs2728121    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502363    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    89015857    rs2231164    C    T    331.46    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=19.5;ReadPosRankSum=0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    0/1:5,12:17:99:361,0,152
4    89016782    rs2231162    A    G    687.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:720,54,0
4    89018565    rs2231157    A    G    154.57    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.059;QD=10.3;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    0/1:9,6:15:99:185,0,299
4    89020427    rs2231156    C    A    594.85    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.448;DB;DP=59;Dels=0.0;FS=2.3;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.505;QD=10.08;ReadPosRankSum=0.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    0/1:36,23:59:99:625,0,1075
4    89022362    rs2231153    C    T    1610.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1644,123,0
4    89036353    rs2725261    C    T    41.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.36;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    0/1:2,2:4:50.97:71,0,51
4    89039082    rs1481012    A    G    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:70,0,27
4    89052323    rs2231142    G    T    1121.31    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.006;DB;DP=69;Dels=0.0;FS=0.907;HRun=1;HaplotypeScore=1.7998;MQ=60.0;MQ0=0;MQRankSum=0.601;QD=16.25;ReadPosRankSum=-0.908;SNPEFF_AMINO_ACID_CHANGE=Q141K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89052213_89052365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    0/1:34,35:69:99:1151,0,1011
4    89060777    rs2622617    G    A    158.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237612    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:191,15,0
4    89311962    rs12510688    T    C    633.90    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=56;Dels=0.0;FS=6.355;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.972;QD=11.32;ReadPosRankSum=0.042;SNPEFF_AMINO_ACID_CHANGE=C199R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89311804_89312031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264346    GT:AD:DP:GQ:PL    0/1:31,25:56:99:664,0,924
4    89319296    rs17014118    T    C    1659.47    PASS    AB=0.319;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=94;Dels=0.0;FS=11.73;HRun=1;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;MQRankSum=0.226;QD=17.65;ReadPosRankSum=-2.018;SNPEFF_AMINO_ACID_CHANGE=F343L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89319294_89319361;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264346    GT:AD:DP:GQ:PL    0/1:30,64:94:99:1689,0,897
4    89389640    rs4585264    C    A    181.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=20.17;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264350    GT:AD:DP:GQ:PL    0/1:3,6:9:94.68:212,0,95
4    89397091    rs7699006    A    G    1235.45    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.577;DB;DP=72;Dels=0.0;FS=3.393;HRun=0;HaplotypeScore=0.9933;MQ=59.36;MQ0=0;MQRankSum=-0.341;QD=17.16;ReadPosRankSum=-0.826;SNPEFF_AMINO_ACID_CHANGE=M136V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89396992_89397181;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508159    GT:AD:DP:GQ:PL    0/1:33,39:72:99:1265,0,1023
4    89415396    rs6857425    T    C    1803.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.7;MQ0=0;QD=29.1;SNPEFF_AMINO_ACID_CHANGE=L424;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89415316_89415482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508159    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1837,144,0
4    89571260    rs2860420    A    G    380.76    PASS    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.248;QD=27.2;ReadPosRankSum=-1.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422770    GT:AD:DP:GQ:PL    0/1:1,13:14:4.53:410,0,5
4    89575324    rs2860427    T    A    688.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422770    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:721,54,0
4    89576581    rs2282593    C    T    72.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431413    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:102,0,69
4    89577214    rs2972040    A    T    687.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_AMINO_ACID_CHANGE=K366M;SNPEFF_CODON_CHANGE=aAg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89577026_89578585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407637    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:720,54,0
4    89585235    rs2972018    A    G    1337.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264345    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1370,99,0
4    89588689    rs3017921    C    T    511.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=31.98;ReadPosRankSum=-1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264345    GT:AD:DP:GQ:PL    1/1:1,15:16:8.17:544,8,0
4    89599421    rs2604227    A    C    104.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264345    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:137,12,0
4    89601410    rs17014449    A    T    450.38    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.042;QD=11.26;ReadPosRankSum=0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264345    GT:AD:DP:GQ:PL    0/1:21,19:40:99:480,0,638
4    89607905    rs3737488    A    G    462.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.19;DB;DP=38;Dels=0.0;FS=3.009;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.518;QD=12.16;ReadPosRankSum=1.752;SNPEFF_AMINO_ACID_CHANGE=L235;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89607887_89607953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512194    GT:AD:DP:GQ:PL    0/1:19,19:38:99:492,0,546
4    89607932    rs7698491    G    A    422.74    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.283;DB;DP=35;Dels=0.0;FS=1.32;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=12.08;ReadPosRankSum=0.75;SNPEFF_AMINO_ACID_CHANGE=E244;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89607887_89607953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512194    GT:AD:DP:GQ:PL    0/1:20,15:35:99:453,0,580
4    89618837    rs710834    T    C    457.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=47.12;MQ0=0;QD=16.34;SNPEFF_AMINO_ACID_CHANGE=A23;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89617066_89619386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323061    GT:AD:DP:GQ:PL    1/1:0,28:28:48.07:490,48,0
4    89625427    rs1804080    G    C    709.14    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.87;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.59;QD=12.44;ReadPosRankSum=-0.853;SNPEFF_AMINO_ACID_CHANGE=E390Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89625249_89625432;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543130    GT:AD:DP:GQ:PL    0/1:29,28:57:99:739,0,920
4    89649491    rs3017895    A    G    55.73    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.727;QD=11.15;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502811    GT:AD:DP:GQ:PL    0/1:1,4:5:30.20:86,0,30
4    89649659    rs9224    A    G    1456.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502811    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1490,117,0
4    89652957    rs115045943    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508360    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    89653010    rs2924940    A    T    150.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511623    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:184,18,0
4    89653103    rs112818517    G    A    364.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.277;DB;DP=28;Dels=0.0;FS=3.08;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.487;QD=13.02;ReadPosRankSum=0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511623    GT:AD:DP:GQ:PL    0/1:16,12:28:99:395,0,556
4    89653257    rs1801915    G    A    428.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.139;DB;DP=42;Dels=0.0;FS=1.221;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=10.19;ReadPosRankSum=-0.979;SNPEFF_AMINO_ACID_CHANGE=D499;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89653153_89653349;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511976    GT:AD:DP:GQ:PL    0/1:24,18:42:99:458,0,849
4    89668210    rs2278877    G    T    340.62    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.205;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.462;QD=12.62;ReadPosRankSum=-0.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507352    GT:AD:DP:GQ:PL    0/1:14,13:27:99:371,0,422
4    89668859    rs7657817    C    T    1198.15    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.543;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.83;MQ0=0;MQRankSum=-0.39;QD=10.99;ReadPosRankSum=-0.081;SNPEFF_AMINO_ACID_CHANGE=V355I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89668782_89669002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511976    GT:AD:DP:GQ:PL    0/1:62,47:109:99:1228,0,1835
4    89669110    rs7658690    G    A    209.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.65;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507352    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:243,18,0
4    89669115    rs7658214    A    G    156.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.41;MQ0=0;QD=19.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507352    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:190,15,0
4    89669852    rs11944668    C    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507352    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:121,9,0
4    89669874    rs28673752    C    T    71.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.96;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507352    GT:AD:DP:GQ:PL    0/1:6,3:9:99:102,0,187
4    89669928    rs3822077    G    A    889.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=38.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507352    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:922,69,0
4    89670155    rs3756050    C    T    7196.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=199;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8547;MQ=59.54;MQ0=0;QD=36.17;SNPEFF_AMINO_ACID_CHANGE=P289;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89670103_89670184;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511976    GT:AD:DP:GQ:PL    1/1:0,199:199:99:7197,527,0
4    89671171    rs2278876    T    C    490.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515155    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:524,45,0
4    89671721    rs61737091    C    T    575.48    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=2.715;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.645;QD=13.08;ReadPosRankSum=1.571;SNPEFF_AMINO_ACID_CHANGE=P184;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_89671575_89671788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511976    GT:AD:DP:GQ:PL    0/1:23,21:44:99:605,0,606
4    89671810    rs3217628    A    AGG    1361.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=48.6772;IndelType=I;MQ=60.47;MQ0=0;QD=59.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264344    GT:AD:DP:GQ:PL    1/1:0,23:23:69.24:1403,69,0
4    89711849    rs2290782    T    C    2636.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.904;DB;DP=202;DS;Dels=0.0;FS=1.539;HRun=0;HaplotypeScore=2.8094;MQ=59.54;MQ0=0;MQRankSum=-0.538;QD=13.05;ReadPosRankSum=-2.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264344    GT:AD:DP:GQ:PL    0/1:101,101:202:99:2666,0,3198
4    89711854    rs2290781    C    T    3174.37    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=9.004;DB;DP=200;DS;Dels=0.0;FS=0.733;HRun=1;HaplotypeScore=3.8092;MQ=59.65;MQ0=0;MQRankSum=0.024;QD=15.87;ReadPosRankSum=-1.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264344    GT:AD:DP:GQ:PL    0/1:101,99:200:99:3204,0,2658
4    89726073    rs3822075    T    A    112.16    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.46;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264344    GT:AD:DP:GQ:PL    0/1:5,4:9:99:142,0,136
4    89744242    rs2305934    T    C    1886.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264344    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1919,159,0
4    90034686    rs17015027    A    G    796    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=27.45;SNPEFF_AMINO_ACID_CHANGE=P187;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_90033968_90036050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIGD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317005    GT:AD:DP:GQ:PL    1/1:0,29:29:66.18:829,66,0
4    90168882    rs13115988    G    A    282.76    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.264;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.286;QD=12.29;ReadPosRankSum=-1.945;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333209    GT:AD:DP:GQ:PL    0/1:12,11:23:99:313,0,317
4    90169925    rs7653897    A    G    763.25    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.145;DB;DP=59;Dels=0.0;FS=8.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.114;QD=12.72;ReadPosRankSum=-1.099;SNPEFF_AMINO_ACID_CHANGE=V446A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_90165429_90171384;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333209    GT:AD:DP:GQ:PL    0/1:29,30:59:99:793,0,978
4    90170118    rs28622301    A    G    776.08    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=3.268;DB;DP=59;Dels=0.0;FS=1.11;HRun=2;HaplotypeScore=0.8667;MQ=59.61;MQ0=0;MQRankSum=0.759;QD=13.15;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=S382P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_90165429_90171384;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333209    GT:AD:DP:GQ:PL    0/1:30,29:59:99:806,0,898
4    90647702    rs145304567    G    T    350.64    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.649;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.129;QD=13.49;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505199    GT:AD:DP:GQ:PL    0/1:14,12:26:99:381,0,494
4    90833153    rs142127543    G    A    390.39    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.015;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.135;QD=10.01;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=D10N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_90833095_90833201;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMRN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508372    GT:AD:DP:GQ:PL    0/1:24,15:39:99:420,0,760
4    90874095    rs5860186    A    AC    470.92    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.023;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=76.7792;IndelType=I;MQ=60.32;MQ0=0;MQRankSum=-0.14;QD=13.85;ReadPosRankSum=2.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264790    GT:AD:DP:GQ:PL    0/1:21,13:34:99:510,0,657
4    91229319    rs116084749    G    A    136.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.05;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM190A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333691    GT:AD:DP:GQ:PL    0/1:3,5:8:83.39:166,0,83
4    91234250    rs1466391    A    G    671.66    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.967;DB;DP=41;Dels=0.0;FS=6.758;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.693;QD=16.38;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM190A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333691    GT:AD:DP:GQ:PL    0/1:19,22:41:99:702,0,528
4    91321314    rs28572332    C    T    631.92    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=2.683;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=59.57;MQ0=0;MQRankSum=1.05;QD=11.7;ReadPosRankSum=-0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM190A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333691    GT:AD:DP:GQ:PL    0/1:31,23:54:99:662,0,1003
4    91701720    rs2271592    C    T    33.70    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.81;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM190A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510519    GT:AD:DP:GQ:PL    0/1:4,3:7:63.69:64,0,144
4    93511396    rs34144324    C    T    760.81    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.179;DB;DP=75;Dels=0.0;FS=4.601;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-1.51;QD=10.14;ReadPosRankSum=0.251;SNPEFF_AMINO_ACID_CHANGE=T68M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_93511282_93511437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282020    GT:AD:DP:GQ:PL    0/1:46,29:75:99:791,0,1337
4    93511481    rs2870639    G    A    677.08    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.169;DB;DP=53;Dels=0.0;FS=3.004;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.432;QD=12.78;ReadPosRankSum=0.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282020    GT:AD:DP:GQ:PL    0/1:26,27:53:99:707,0,901
4    94032125    rs78495618    G    C    604.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.856;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.773;QD=12.6;ReadPosRankSum=0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282020    GT:AD:DP:GQ:PL    0/1:24,24:48:99:635,0,741
4    94159770    rs13142615    A    G    255.82    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.304;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9947;MQ=58.84;MQ0=0;MQRankSum=0.532;QD=12.79;ReadPosRankSum=-0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512631    GT:AD:DP:GQ:PL    0/1:9,11:20:99:286,0,308
4    94316763    rs1385405    T    G    1744.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=55;Dels=0.0;FS=2.785;HRun=2;HaplotypeScore=0.8941;MQ=59.58;MQ0=0;MQRankSum=-1.551;QD=31.72;ReadPosRankSum=1.416;SNPEFF_AMINO_ACID_CHANGE=G322;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_94316758_94316859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510992    GT:AD:DP:GQ:PL    1/1:2,53:55:99:1778,103,0
4    94376675    rs6819866    A    T    110.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.37;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282020    GT:AD:DP:GQ:PL    0/1:2,4:6:61.75:140,0,62
4    94411606    rs2870710    G    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282020    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    94436697    rs6834210    A    T    203.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282020    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:236,18,0
4    94750058    rs10009502    C    G    137.59    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.555;QD=11.47;ReadPosRankSum=-2.034;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_4_94750042_94751221;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATOH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306011    GT:AD:DP:GQ:PL    0/1:3,9:12:86.70:168,0,87
4    95147553    rs34491534    C    CT    255.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.448;DB;DP=20;FS=0.0;HRun=13;HaplotypeScore=162.7941;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=0.0;QD=12.76;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354268    GT:AD:DP:GQ:PL    1/1:11,9:20:15.32:297,15,0
4    95161996    rs2306803    C    T    260.61    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=23.69;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354268    GT:AD:DP:GQ:PL    0/1:3,8:11:87.57:291,0,88
4    95170635    rs6844517    C    T    31.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.39;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354268    GT:AD:DP:GQ:PL    0/1:3,2:5:61.94:62,0,112
4    95170839    rs11722476    G    A    1010.49    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=91;Dels=0.0;FS=4.082;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=11.1;ReadPosRankSum=0.701;SNPEFF_AMINO_ACID_CHANGE=S247N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_95170805_95170906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354268    GT:AD:DP:GQ:PL    0/1:56,35:91:99:1040,0,1663
4    95173779    rs7439869    T    C    648.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_AMINO_ACID_CHANGE=V301A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_95173767_95174158;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354268    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:682,48,0
4    95185854    rs10029551    A    G    486.10    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=51;Dels=0.0;FS=5.353;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.549;QD=9.53;ReadPosRankSum=-0.909;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354268    GT:AD:DP:GQ:PL    0/1:34,17:51:99:516,0,1135
4    95186055    rs2306802    A    G    655.75    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.789;DB;DP=37;Dels=0.0;FS=1.614;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=17.72;ReadPosRankSum=-1.284;SNPEFF_AMINO_ACID_CHANGE=Q493;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_95185858_95186057;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354268    GT:AD:DP:GQ:PL    0/1:15,22:37:99:686,0,446
4    95197520    rs6823404    C    T    899.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.476;DB;DP=28;Dels=0.0;FS=5.283;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.476;QD=32.13;ReadPosRankSum=-1.348;SNPEFF_AMINO_ACID_CHANGE=D183;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_95197490_95197625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000509418    GT:AD:DP:GQ:PL    1/1:1,27:28:32.59:933,33,0
4    95199479    rs35670996    C    G    131.36    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=11.94;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506089    GT:AD:DP:GQ:PL    0/1:5,6:11:99:161,0,175
4    95202492    rs35361491    G    A    434.72    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=16.1;ReadPosRankSum=0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510105    GT:AD:DP:GQ:PL    0/1:12,15:27:99:465,0,412
4    95206252    rs67631469    TTATC    T    2814.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=286.4069;IndelType=D;MQ=55.88;MQ0=0;QD=50.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354268    GT:AD:DP:GQ:PL    1/1:5,51:56:99:2857,154,0
4    95229745    rs55710447    T    C    571.66    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.402;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.801;QD=14.66;ReadPosRankSum=1.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295256    GT:AD:DP:GQ:PL    0/1:20,19:39:99:602,0,576
4    95255637    rs2289186    T    G    865.78    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=63;Dels=0.0;FS=1.048;HRun=0;HaplotypeScore=1.9732;MQ=60.0;MQ0=0;MQRankSum=0.615;QD=13.74;ReadPosRankSum=-0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295256    GT:AD:DP:GQ:PL    0/1:29,33:63:99:896,0,820
4    95503902    rs5013417    T    C    138.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=9.93;ReadPosRankSum=-1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317968    GT:AD:DP:GQ:PL    0/1:8,6:14:99:169,0,256
4    95505975    rs12639887    C    T    1477.92    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=3.474;DB;DP=136;Dels=0.0;FS=2.277;HRun=3;HaplotypeScore=0.9947;MQ=59.69;MQ0=0;MQRankSum=0.303;QD=10.87;ReadPosRankSum=0.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508531    GT:AD:DP:GQ:PL    0/1:81,55:136:99:1508,0,2217
4    95506214    rs2172448    G    A    659.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.638;DB;DP=30;Dels=0.0;FS=2.741;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.154;QD=21.99;ReadPosRankSum=0.946;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508531    GT:AD:DP:GQ:PL    0/1:10,20:30:99:690,0,309
4    95506842    rs11097431    G    A    1147.46    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=64;Dels=0.0;FS=1.006;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.359;QD=17.93;ReadPosRankSum=-1.157;SNPEFF_AMINO_ACID_CHANGE=Q156;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_95506716_95506888;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318007    GT:AD:DP:GQ:PL    0/1:28,36:64:99:1177,0,901
4    95508108    rs35595077    CT    C    43.38    QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.387;DB;DP=61;FS=0.0;HRun=19;HaplotypeScore=482.7805;IndelType=D;MQ=49.33;MQ0=0;MQRankSum=1.734;QD=0.7;ReadPosRankSum=1.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508531    GT:AD:DP:GQ:PL    0/1:45,6:61:82.41:82,0,208
4    95508127    .    TG    T    157.48    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=4.149;DP=70;FS=36.368;HRun=1;HaplotypeScore=489.2069;IndelType=D;MQ=50.42;MQ0=0;MQRankSum=0.146;QD=2.22;ReadPosRankSum=0.902;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508531    GT:AD:DP:GQ:PL    0/1:55,16:70:99:197,0,687
4    95508281    rs5860367    CT    C    440.10    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=2.407;DB;DP=57;FS=2.373;HRun=11;HaplotypeScore=202.4288;IndelType=D;MQ=55.87;MQ0=0;MQRankSum=-0.439;QD=7.72;ReadPosRankSum=0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450793    GT:AD:DP:GQ:PL    0/1:31,26:57:99:479,0,532
4    95539267    rs966845    G    A    1388.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=28.33;SNPEFF_AMINO_ACID_CHANGE=A223T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_95539155_95539342;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542407    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1421,111,0
4    95561459    rs7690296    A    G    742.25    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.058;DB;DP=51;Dels=0.0;FS=1.421;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.709;QD=14.55;ReadPosRankSum=1.524;SNPEFF_AMINO_ACID_CHANGE=T259A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_95561427_95561601;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542407    GT:AD:DP:GQ:PL    0/1:24,26:51:99:772,0,675
4    95561651    rs72473204    GT    G    57.64    QDFilter2    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=0.353;DB;DP=33;FS=3.274;HRun=16;HaplotypeScore=191.4244;IndelType=D;MQ=53.44;MQ0=0;MQRankSum=0.088;QD=1.75;ReadPosRankSum=-0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317968    GT:AD:DP:GQ:PL    0/1:15,13:33:96.67:97,0,131
4    95578588    rs13107595    G    A    1967.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_AMINO_ACID_CHANGE=S370N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_95578578_95578698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542407    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2001,147,0
4    95583388    rs148232042    TC    T    215.69    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=69.9339;IndelType=D;MQ=60.77;MQ0=0;MQRankSum=-1.739;QD=15.41;ReadPosRankSum=0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317968    GT:AD:DP:GQ:PL    0/1:6,8:14:99:255,0,228
4    95583827    rs10031423    C    T    231.14    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.355;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=58.71;MQ0=0;MQRankSum=0.4;QD=12.84;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317968    GT:AD:DP:GQ:PL    0/1:8,10:18:99:261,0,246
4    95585038    rs56921499    G    A    139.52    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.466;QD=10.73;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317968    GT:AD:DP:GQ:PL    0/1:4,9:13:99:170,0,122
4    95585225    rs1056772    A    G    683.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.854;DB;DP=40;Dels=0.0;FS=1.795;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.771;QD=17.09;ReadPosRankSum=-1.772;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503974    GT:AD:DP:GQ:PL    0/1:20,20:40:99:714,0,612
4    96035796    rs10622489    G    GAC    485.41    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.355;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=94.2946;IndelType=I;MQ=60.33;MQ0=0;MQRankSum=0.066;QD=14.71;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMPR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264568    GT:AD:DP:GQ:PL    0/1:20,13:33:99:524,0,431
4    96073956    rs1365691    A    T    137.62    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=15;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=0.5784;MQ=56.85;MQ0=0;MQRankSum=-0.405;QD=9.17;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMPR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264568    GT:AD:DP:GQ:PL    0/1:8,7:15:99:168,0,251
4    96075965    rs1434536    C    T    41.61    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.546;QD=4.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMPR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512312    GT:AD:DP:GQ:PL    0/1:7,3:10:71.60:72,0,258
4    96091250    rs2241744    G    A    796.27    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=4.837;DB;DP=46;Dels=0.0;FS=1.67;HRun=0;HaplotypeScore=1.9883;MQ=59.5;MQ0=0;MQRankSum=0.126;QD=17.31;ReadPosRankSum=0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331502    GT:AD:DP:GQ:PL    0/1:19,27:46:99:826,0,532
4    96091524    rs2241743    G    A    463.65    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=35;Dels=0.0;FS=6.384;HRun=1;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.447;QD=13.25;ReadPosRankSum=0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331502    GT:AD:DP:GQ:PL    0/1:19,16:35:99:494,0,552
4    96103865    rs3796464    A    T    60.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=6.01;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513796    GT:AD:DP:GQ:PL    0/1:5,5:10:90.10:90,0,153
4    96106322    rs2289043    A    G    1005.09    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.411;DB;DP=74;Dels=0.0;FS=1.062;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=1.7;QD=13.58;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=M680T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_96106198_96106347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331502    GT:AD:DP:GQ:PL    0/1:39,35:74:99:1035,0,1266
4    96123981    rs3733212    C    T    391.72    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.138;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=12.64;ReadPosRankSum=1.087;SNPEFF_AMINO_ACID_CHANGE=A638;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_96123882_96124115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331502    GT:AD:DP:GQ:PL    0/1:15,16:31:99:422,0,468
4    96127869    rs2276322    T    G    278.38    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.076;DB;DP=30;Dels=0.0;FS=4.298;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.043;QD=9.28;ReadPosRankSum=0.172;SNPEFF_AMINO_ACID_CHANGE=P563;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_96127779_96127947;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331502    GT:AD:DP:GQ:PL    0/1:19,11:30:99:308,0,667
4    96256616    rs4699423    A    G    1079.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=28.41;SNPEFF_AMINO_ACID_CHANGE=S56;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_96256561_96256783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331502    GT:AD:DP:GQ:PL    1/1:0,38:38:90.19:1112,90,0
4    96256673    rs1843018    G    A    1429.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=P37;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_96256561_96256783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331502    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1463,108,0
4    96761233    rs10516983    G    A    59.17    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.956;QD=7.4;ReadPosRankSum=-1.517;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295266    GT:AD:DP:GQ:PL    0/1:5,3:8:89.16:89,0,166
4    96761256    rs11725710    G    C    102.39    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.922;QD=11.38;ReadPosRankSum=0.421;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_4_96761239_96762625;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295266    GT:AD:DP:GQ:PL    0/1:4,5:9:83.58:132,0,84
4    98761900    rs11735193    C    T    611.53    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.682;DB;DP=63;Dels=0.0;FS=2.929;HRun=3;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.262;QD=9.71;ReadPosRankSum=-1.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:39,24:63:99:642,0,1233
4    98893334    rs13147195    G    T    702.43    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.802;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=20.07;ReadPosRankSum=-0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:13,22:35:99:732,0,429
4    98893721    rs9884501    A    C    242.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=20.25;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:4,8:12:99:273,0,129
4    98902278    rs35146453    A    G    793.67    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.47;DB;DP=61;Dels=0.0;FS=2.957;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=13.01;ReadPosRankSum=-1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:30,31:61:99:824,0,1066
4    99027137    rs2865979    T    C    256.18    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.293;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.084;QD=7.76;ReadPosRankSum=1.299;SNPEFF_AMINO_ACID_CHANGE=L193;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_99027104_99027215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:24,9:33:99:286,0,678
4    99027184    rs2903150    T    C    185.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.592;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.665;QD=6.18;ReadPosRankSum=1.262;SNPEFF_AMINO_ACID_CHANGE=I178V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_99027104_99027215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:20,10:30:99:216,0,626
4    99027218    rs2903151    T    C    239.71    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.993;QD=15.98;ReadPosRankSum=-0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:7,8:15:99:270,0,212
4    99030211    rs10019087    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:2,2:4:71.42:72,0,71
4    99030587    rs10021709    G    A    32.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.17;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:2,2:4:62.67:63,0,70
4    99049593    rs17558193    A    G    569.48    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=47;Dels=0.0;FS=6.36;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.861;QD=12.12;ReadPosRankSum=0.032;SNPEFF_AMINO_ACID_CHANGE=Y125H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_99049579_99049743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:27,20:47:99:599,0,847
4    99055406    rs13328042    A    G    173.04    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.016;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.381;QD=7.21;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:17,7:24:99:203,0,593
4    99055480    rs13328005    T    C    1090.19    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=75;Dels=0.0;FS=14.118;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.715;QD=14.54;ReadPosRankSum=0.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295268    GT:AD:DP:GQ:PL    0/1:38,37:75:99:1120,0,1028
4    99325549    rs41275691    A    G    457.42    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.261;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=-0.571;QD=13.86;ReadPosRankSum=-0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:13,20:33:99:487,0,446
4    99325877    rs10003061    G    A    229.94    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=13.53;ReadPosRankSum=0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514122    GT:AD:DP:GQ:PL    0/1:8,9:17:99:260,0,274
4    99338148    rs60544326    C    G    196.42    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.291;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.22;QD=8.54;ReadPosRankSum=0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:14,9:23:99:226,0,508
4    99338198    rs12509834    C    G    155.93    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=22.28;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:2,5:7:58.92:186,0,59
4    99338367    rs61080824    T    A    32.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=5.48;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:3,3:6:62.84:63,0,106
4    99341156    rs12512920    C    G    835.57    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=1.081;QD=14.41;ReadPosRankSum=1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:30,28:58:99:866,0,972
4    99342227    rs41275693    C    T    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,73
4    99357999    rs6831386    G    T    160.15    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.682;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.72;MQ0=0;MQRankSum=-0.772;QD=10.68;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:7,8:15:99:190,0,250
4    99358083    rs11386407    A    AT    533.63    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.712;DB;DP=33;FS=0.0;HRun=4;HaplotypeScore=79.7277;IndelType=I;MQ=60.09;MQ0=0;MQRankSum=1.866;QD=16.17;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:17,16:33:99:573,0,477
4    99363400    rs77609098    G    A    133.41    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=11.12;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GDS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264572    GT:AD:DP:GQ:PL    0/1:7,5:12:99:163,0,256
4    99399748    rs4303985    G    T    902.59    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.129;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=59.33;MQ0=0;MQRankSum=-0.006;QD=13.08;ReadPosRankSum=2.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509168    GT:AD:DP:GQ:PL    0/1:33,36:69:99:933,0,1062
4    99400075    rs73832318    T    C    131.75    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.689;QD=10.13;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511651    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,241
4    99802395    rs11729285    C    T    152.27    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.06;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=1.859;QD=8.96;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280892    GT:AD:DP:GQ:PL    0/1:11,6:17:99:182,0,394
4    99808136    rs139066077    CTTAAA    C    646.45    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=4.06;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=165.3757;IndelType=D;MQ=54.91;MQ0=0;MQRankSum=-2.427;QD=20.85;ReadPosRankSum=-0.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505829    GT:AD:DP:GQ:PL    0/1:18,13:31:99:685,0,1492
4    99808254    rs62323192    G    A    1434.79    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.414;DB;DP=144;Dels=0.0;FS=1.413;HRun=0;HaplotypeScore=1.7323;MQ=52.47;MQ0=0;MQRankSum=-1.047;QD=9.96;ReadPosRankSum=-1.965;SNPEFF_AMINO_ACID_CHANGE=D125;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_99808230_99808343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450253    GT:AD:DP:GQ:PL    0/1:83,61:144:99:1465,0,2458
4    99822905    rs17570252    T    C    281.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=15.62;ReadPosRankSum=-2.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280892    GT:AD:DP:GQ:PL    0/1:9,9:18:99:311,0,299
4    99850126    rs11723037    A    G    37.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450253    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:67,0,36
4    99877402    rs1230148    T    G    243.25    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.042;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9329;MQ=59.36;MQ0=0;MQRankSum=-0.115;QD=8.39;ReadPosRankSum=-1.858;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM177A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503598    GT:AD:DP:GQ:PL    0/1:19,10:29:99:273,0,692
4    99877445    rs6810489    T    G    102.18    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.663;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.278;QD=9.29;ReadPosRankSum=0.896;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM177A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503598    GT:AD:DP:GQ:PL    0/1:7,4:11:99:132,0,248
4    99877752    rs33952764    CA    C    142.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.675;DB;DP=33;FS=0.0;HRun=20;HaplotypeScore=363.4012;IndelType=D;MQ=44.3;MQ0=0;MQRankSum=-0.178;QD=4.32;ReadPosRankSum=-1.173;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM177A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503598    GT:AD:DP:GQ:PL    1/1:8,14:33:15.69:184,16,0
4    99978697    rs57098596    G    A    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296411    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:73,0,26
4    99995851    rs28730631    C    CAGG    298.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=12.1313;IndelType=I;MQ=55.21;MQ0=0;QD=59.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502590    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:340,15,0
4    99996373    rs1154416    G    T    310.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=2.8995;MQ=60.0;MQ0=0;QD=25.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502590    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:343,30,0
4    100002372    rs896992    C    T    128.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502386    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:161,12,0
4    100009738    rs1154401    G    C    782.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296412    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:815,63,0
4    100009952    rs11434442    T    TGG    182.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=8;HaplotypeScore=48.6494;IndelType=I;MQ=57.04;MQ0=0;QD=30.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296412    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:224,15,0
4    100045500    rs1042365    T    G    434.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=28.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505590    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:468,39,0
4    100045574    rs1042364    T    C    905.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.581;MQ=59.2;MQ0=0;QD=31.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506705    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:938,72,0
4    100045616    rs1126673    C    T    884.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=V374I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100044818_100045617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265512    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:918,66,0
4    100045647    rs2602894    A    G    648.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506705    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:682,51,0
4    100047929    rs10009145    G    A    775.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503416    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:809,60,0
4    100048327    rs9307234    G    A    1083.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=1.634;QD=30.96;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503416    GT:AD:DP:GQ:PL    1/1:1,34:35:93.28:1117,93,0
4    100048414    rs1126671    T    C    1707.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=I309V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100048360_100048495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265512    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1740,126,0
4    100048506    rs6836440    G    A    1022.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503416    GT:AD:DP:GQ:PL    1/1:0,28:28:81.25:1055,81,0
4    100052555    rs29001207    G    C    193.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=24.21;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503416    GT:AD:DP:GQ:PL    0/1:2,6:8:56.57:224,0,57
4    100052733    rs1126670    C    A    2274.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=37.9;SNPEFF_AMINO_ACID_CHANGE=P255;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100052655_100052915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265512    GT:AD:DP:GQ:PL    1/1:0,59:60:99:2307,169,0
4    100062819    rs2032349    A    G    1444.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=S45;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100062692_100062833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265512    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1478,108,0
4    100065509    rs1800759    T    G    325.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504581    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:358,27,0
4    100134713    rs5860571    A    AT    236.82    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=21;FS=2.831;HRun=0;HaplotypeScore=44.9069;IndelType=I;MQ=57.77;MQ0=0;MQRankSum=-0.634;QD=11.28;ReadPosRankSum=0.713;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513262    GT:AD:DP:GQ:PL    0/1:16,5:21:99:276,0,481
4    100140306    rs4699735    A    T    737.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_AMINO_ACID_CHANGE=C2S;SNPEFF_CODON_CHANGE=Tgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100140292_100140694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000237653    GT:AD:DP:GQ:PL    1/1:0,25:25:54.18:770,54,0
4    100205819    rs28364312    C    A    549.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.487;DB;DP=30;Dels=0.0;FS=5.792;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.604;QD=18.31;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511656    GT:AD:DP:GQ:PL    0/1:12,18:30:99:579,0,387
4    100205829    rs28364311    T    G    524.16    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.607;DB;DP=29;Dels=0.0;FS=6.301;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=18.07;ReadPosRankSum=-0.607;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH1A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000503461    GT:AD:DP:GQ:PL    0/1:11,18:29:99:554,0,372
4    100212197    rs4147531    G    A    373.04    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.202;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.403;QD=16.22;ReadPosRankSum=0.279;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209668    GT:AD:DP:GQ:PL    0/1:10,13:23:99:403,0,353
4    100229037    .    A    T    205.57    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.071;DP=32;Dels=0.0;FS=13.336;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.436;QD=6.42;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305046    GT:AD:DP:GQ:PL    0/1:21,11:32:99:236,0,666
4    100231602    rs28914783    C    T    263.58    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.431;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.485;QD=10.14;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305046    GT:AD:DP:GQ:PL    0/1:17,9:26:99:294,0,609
4    100235053    rs1789882    A    G    2608.48    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=6.831;DB;DP=247;DS;Dels=0.0;FS=1.085;HRun=1;HaplotypeScore=1.8665;MQ=40.35;MQ0=14;MQRankSum=-5.018;QD=10.56;ReadPosRankSum=0.159;SNPEFF_AMINO_ACID_CHANGE=I211;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100234978_100235238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394887    GT:AD:DP:GQ:PL    0/1:128,119:247:99:2638,0,3727
4    100239112    rs4147536    A    C    588.57    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.289;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.208;QD=13.69;ReadPosRankSum=0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305046    GT:AD:DP:GQ:PL    0/1:24,19:43:99:619,0,804
4    100239319    rs1229984    T    C    4133.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7845;MQ=59.29;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=H48R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100239203_100239341;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305046    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4133,334,0
4    100258007    rs1612735    T    C    259.39    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.134;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=11.79;ReadPosRankSum=-0.801;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515683    GT:AD:DP:GQ:PL    0/1:13,9:22:99:289,0,426
4    100258054    rs1693453    C    A    90.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=7.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515683    GT:AD:DP:GQ:PL    0/1:8,4:12:99:120,0,275
4    100260667    rs66502432    ACGCC    A    260.25    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=80.1665;IndelType=D;MQ=39.02;MQ0=0;MQRankSum=0.633;QD=26.03;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510055    GT:AD:DP:GQ:PL    0/1:4,6:10:99:299,0,173
4    100260677    rs2298754    C    G    33.72    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=43.23;MQ0=0;MQRankSum=0.38;QD=2.81;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510055    GT:AD:DP:GQ:PL    0/1:5,7:12:63.72:64,0,98
4    100260789    rs698    T    C    1747.39    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=58.79;MQ0=0;MQRankSum=-0.109;QD=18.2;ReadPosRankSum=0.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510055    GT:AD:DP:GQ:PL    0/1:41,55:96:99:1777,0,1224
4    100261038    rs2298755    C    G    61.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=7.66;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510055    GT:AD:DP:GQ:PL    0/1:4,4:8:91.30:91,0,133
4    100261577    rs55753621    AT    A    127.90    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=34.3433;IndelType=D;MQ=63.25;MQ0=0;MQRankSum=1.656;QD=9.84;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:8,5:13:99:167,0,227
4    100261952    rs1693471    G    A    490.19    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.136;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.082;QD=18.85;ReadPosRankSum=-0.915;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:11,15:26:99:520,0,332
4    100263762    rs1693480    G    C    150.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=16.67;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,118
4    100263778    rs1789911    T    C    183.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.32;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,196
4    100263834    rs1693481    C    T    442.18    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=-0.108;QD=11.64;ReadPosRankSum=1.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:23,15:38:99:472,0,769
4    100263942    rs1789912    C    T    1921.39    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.701;DB;DP=159;Dels=0.0;FS=3.165;HRun=0;HaplotypeScore=2.7607;MQ=56.89;MQ0=0;MQRankSum=1.911;QD=12.08;ReadPosRankSum=-0.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:94,65:159:99:1951,0,2845
4    100263965    rs1693482    C    T    2395.03    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=4.243;DB;DP=203;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.75;MQ0=2;MQRankSum=0.765;QD=11.8;ReadPosRankSum=0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:115,88:203:99:2425,0,3467
4    100264102    rs6413444    G    A    3798.12    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.236;DB;DP=238;DS;Dels=0.0;FS=17.792;HRun=0;HaplotypeScore=3.6201;MQ=55.96;MQ0=0;MQRankSum=2.559;QD=15.96;ReadPosRankSum=0.262;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:112,124:238:99:3798,0,3798
4    100266112    rs1693425    C    T    1617    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=0.864;DB;DP=117;Dels=0.0;FS=3.613;HRun=0;HaplotypeScore=4.7989;MQ=59.25;MQ0=0;MQRankSum=0.081;QD=13.82;ReadPosRankSum=0.831;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:58,59:117:99:1647,0,1703
4    100266330    rs1693426    A    G    266.24    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.205;DB;DP=24;Dels=0.0;FS=9.828;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=11.09;ReadPosRankSum=0.029;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:14,10:24:99:296,0,462
4    100266371    rs1789915    A    G    414.53    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=29;Dels=0.0;FS=3.556;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.416;QD=14.29;ReadPosRankSum=0.487;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:12,17:29:99:445,0,345
4    100266583    rs1662053    A    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    100268049    rs1693431    T    G    981.24    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.657;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=55.72;MQ0=0;MQRankSum=2.302;QD=18.17;ReadPosRankSum=-0.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:20,34:54:99:1011,0,664
4    100268190    rs283413    A    C    5888.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=182;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.82;MQ0=0;QD=32.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    1/1:0,182:182:99:5888,475,0
4    100268856    rs1789920    A    C    439.60    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.557;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.76;QD=20.93;ReadPosRankSum=1.629;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:8,13:21:99:470,0,260
4    100269202    rs1789921    G    A    81.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.42;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ADH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505942    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:112,0,30
4    100341643    rs1154460    G    A    342.41    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.554;DB;DP=28;Dels=0.0;FS=1.714;HRun=0;HaplotypeScore=0.9947;MQ=59.17;MQ0=0;MQRankSum=0.864;QD=12.23;ReadPosRankSum=-0.321;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209665    GT:AD:DP:GQ:PL    0/1:17,11:28:99:372,0,468
4    100356337    rs1154470    G    A    268.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=22.37;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209665    GT:AD:DP:GQ:PL    0/1:3,9:12:83.21:298,0,83
4    100443720    rs13143848    G    A    930.93    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=17.24;ReadPosRankSum=-1.881;SNPEFF_AMINO_ACID_CHANGE=G64E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100443657_100443866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326581    GT:AD:DP:GQ:PL    0/1:21,33:54:99:961,0,551
4    100443782    rs13119384    T    C    674.79    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=0.218;DB;DP=51;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.425;QD=13.23;ReadPosRankSum=-2.188;SNPEFF_AMINO_ACID_CHANGE=S85P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100443657_100443866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326581    GT:AD:DP:GQ:PL    0/1:19,32:51:99:705,0,580
4    100445589    rs35080520    T    TC    320.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=36.0367;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=-0.433;QD=17.79;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326581    GT:AD:DP:GQ:PL    0/1:9,9:18:99:359,0,284
4    100445786    rs7697177    A    G    648.88    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.391;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=58.81;MQ0=0;MQRankSum=-0.548;QD=16.64;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326581    GT:AD:DP:GQ:PL    0/1:19,20:39:99:679,0,624
4    100451197    rs2089079    C    T    76.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.78;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503257    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,104
4    100458721    rs10516442    T    C    147.98    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=13.45;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326581    GT:AD:DP:GQ:PL    0/1:5,6:11:99:178,0,176
4    100480169    rs73832830    C    T    130.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.426;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=10.85;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RG9MTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273962    GT:AD:DP:GQ:PL    0/1:6,6:12:99:160,0,217
4    100504575    rs2306986    G    C    1975.50    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.969;DB;DP=148;Dels=0.0;FS=0.622;HRun=0;HaplotypeScore=0.9958;MQ=59.84;MQ0=0;MQRankSum=-0.541;QD=13.35;ReadPosRankSum=0.264;SNPEFF_AMINO_ACID_CHANGE=E108D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100504531_100504674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTTP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506883    GT:AD:DP:GQ:PL    0/1:81,67:148:99:2005,0,2265
4    100510859    rs991811    T    C    531.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.72;DB;DP=38;Dels=0.0;FS=1.273;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.319;QD=13.99;ReadPosRankSum=-0.501;SNPEFF_AMINO_ACID_CHANGE=G151;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100510800_100510907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTTP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265517    GT:AD:DP:GQ:PL    0/1:19,19:38:99:561,0,571
4    100510903    rs3792683    A    G    465.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.81;DB;DP=33;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=1.79;MQ=59.3;MQ0=0;MQRankSum=0.494;QD=14.1;ReadPosRankSum=1.285;SNPEFF_AMINO_ACID_CHANGE=N166S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100510800_100510907;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTTP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265517    GT:AD:DP:GQ:PL    0/1:18,15:33:99:495,0,460
4    100512412    rs982424    T    C    973.17    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.752;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.36;MQ0=0;MQRankSum=-0.373;QD=13.52;ReadPosRankSum=-0.09;SNPEFF_AMINO_ACID_CHANGE=C174;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100512392_100512508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTTP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265517    GT:AD:DP:GQ:PL    0/1:39,33:72:99:1003,0,1279
4    100516022    rs2306985    C    G    581.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.252;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.931;QD=13.84;ReadPosRankSum=-1.031;SNPEFF_AMINO_ACID_CHANGE=H297Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_100515890_100516040;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTTP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265517    GT:AD:DP:GQ:PL    0/1:21,21:42:99:611,0,680
4    100539896    rs1032355    T    C    111.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=7.96;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265517    GT:AD:DP:GQ:PL    0/1:7,7:14:99:141,0,253
4    100542482    rs881981    A    G    559.04    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.971;DB;DP=33;Dels=0.0;FS=3.912;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.35;QD=16.94;ReadPosRankSum=0.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MTTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265517    GT:AD:DP:GQ:PL    0/1:13,20:33:99:589,0,399
4    101108875    rs142998882    GT    G    846.78    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=6.727;DB;DP=73;FS=2.05;HRun=6;HaplotypeScore=314.9858;IndelType=D;MQ=60.3;MQ0=0;MQRankSum=1.794;QD=11.6;ReadPosRankSum=0.306;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_101107027_101109324;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDIT4L;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000273990    GT:AD:DP:GQ:PL    0/1:38,35:73:99:886,0,1164
4    101109385    rs3749603    A    C    101.94    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=6.37;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDIT4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273990    GT:AD:DP:GQ:PL    0/1:10,6:16:99:132,0,344
4    101337130    rs13122163    A    T    625    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296420    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:658,51,0
4    101342252    rs34038967    G    A    221.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502569    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:255,21,0
4    101368559    rs13111099    T    C    485.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.273;QD=32.35;ReadPosRankSum=1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296420    GT:AD:DP:GQ:PL    1/1:1,14:15:5.83:516,6,0
4    101368633    rs34694128    T    G    852.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.472;DB;DP=28;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=30.45;ReadPosRankSum=0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296420    GT:AD:DP:GQ:PL    1/1:2,26:28:27.46:886,27,0
4    101386961    rs41275731    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296420    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    101401015    rs34509011    T    C    339.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=26;Dels=0.0;FS=6.214;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.357;QD=13.07;ReadPosRankSum=-1.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502744    GT:AD:DP:GQ:PL    0/1:14,12:26:99:370,0,399
4    101953322    rs2851060    C    T    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323055    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:66,0,34
4    102267821    rs62322614    A    C    439.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323055    GT:AD:DP:GQ:PL    1/1:0,17:17:42.11:473,42,0
4    102267822    rs2583390    A    G    400.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP3CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323055    GT:AD:DP:GQ:PL    1/1:0,16:16:42.09:434,42,0
4    102750922    rs17266594    T    C    98.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=14.14;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322953    GT:AD:DP:GQ:PL    0/1:2,5:7:60.31:129,0,60
4    102751014    rs35978636    G    C    435.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.379;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.482;QD=12.8;ReadPosRankSum=-0.792;SNPEFF_AMINO_ACID_CHANGE=W10C;SNPEFF_CODON_CHANGE=tgG/tgC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_102750965_102751363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444316    GT:AD:DP:GQ:PL    0/1:17,17:34:99:465,0,538
4    102751076    rs10516487    G    A    764.44    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=4.407;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.642;QD=12.53;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=R31H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_102750965_102751363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444316    GT:AD:DP:GQ:PL    0/1:31,30:61:99:794,0,801
4    102751276    rs10516486    C    T    527.86    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=47;Dels=0.0;FS=6.369;HRun=1;HaplotypeScore=0.9734;MQ=58.91;MQ0=0;MQRankSum=0.233;QD=11.23;ReadPosRankSum=-0.277;SNPEFF_AMINO_ACID_CHANGE=L113;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_102750965_102751363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504592    GT:AD:DP:GQ:PL    0/1:27,20:47:99:558,0,859
4    102776083    rs6849308    C    T    331.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322953    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:365,27,0
4    102783642    rs12647710    C    A    555.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322953    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:588,45,0
4    102791905    rs10516483    C    G    368.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322953    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:401,30,0
4    102839362    rs3733198    A    T    918.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322953    GT:AD:DP:GQ:PL    1/1:0,32:32:87.21:952,87,0
4    102942761    rs2631261    C    T    1117.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322953    GT:AD:DP:GQ:PL    1/1:0,34:34:87.25:1151,87,0
4    102946671    rs11286243    GT    G    1140    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=3;HaplotypeScore=93.156;IndelType=D;MQ=60.95;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322953    GT:AD:DP:GQ:PL    1/1:2,32:34:96.30:1182,96,0
4    102950983    rs79386247    C    T    813.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322953    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:846,63,0
4    102951647    rs61570081    C    T    40.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=47.12;MQ0=0;QD=20.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510950    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
4    102965043    rs3113676    T    C    5015.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=59.88;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=C517R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_102964996_102965064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428908    GT:AD:DP:GQ:PL    1/1:0,157:157:99:5015,379,0
4    103184089    rs151393    A    G    212.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424970    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:245,21,0
4    103189416    rs13114343    G    A    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512337    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
4    103225513    rs11097773    T    C    377.77    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.39;DB;DP=30;Dels=0.0;FS=3.325;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.004;QD=12.59;ReadPosRankSum=0.544;SNPEFF_AMINO_ACID_CHANGE=G267;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103225474_103225638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356736    GT:AD:DP:GQ:PL    0/1:17,13:30:99:408,0,495
4    103225947    rs10017306    T    A    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502903    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:63,0,71
4    103228734    rs35411892    C    T    2562.69    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=5.968;DB;DP=158;Dels=0.0;FS=0.662;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.216;QD=16.22;ReadPosRankSum=-0.241;SNPEFF_AMINO_ACID_CHANGE=T137;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103228593_103228762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356736    GT:AD:DP:GQ:PL    0/1:77,81:158:99:2593,0,2076
4    103458877    rs230525    G    A    62.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=12.43;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226574    GT:AD:DP:GQ:PL    0/1:2,3:5:61.33:92,0,61
4    103458888    rs35628038    TCA    T    163.57    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=31.7963;IndelType=D;MQ=59.78;MQ0=0;MQRankSum=0.736;QD=27.26;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226574    GT:AD:DP:GQ:PL    0/1:1,5:6:38.18:203,0,38
4    103488491    rs230496    G    A    194.81    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=27.83;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502367    GT:AD:DP:GQ:PL    0/1:1,6:7:16.73:225,0,17
4    103503824    rs4699030    G    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510638    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:72,0,30
4    103505784    rs34933613    CA    C    135.60    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=33;FS=6.628;HRun=14;HaplotypeScore=168.8501;IndelType=D;MQ=55.62;MQ0=0;MQRankSum=0.606;QD=4.11;ReadPosRankSum=0.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510638    GT:AD:DP:GQ:PL    0/1:17,14:33:99:175,0,261
4    103505961    rs4648039    C    T    570.20    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=37;Dels=0.0;FS=1.672;HRun=1;HaplotypeScore=0.6651;MQ=58.11;MQ0=0;MQRankSum=1.303;QD=15.41;ReadPosRankSum=-1.426;SNPEFF_AMINO_ACID_CHANGE=Y143;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103505839_103505977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508584    GT:AD:DP:GQ:PL    0/1:16,21:37:99:600,0,522
4    103514445    rs1020760    C    G    428.35    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.413;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.814;QD=10.71;ReadPosRankSum=-1.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226574    GT:AD:DP:GQ:PL    0/1:23,17:40:99:458,0,816
4    103514658    rs1609993    T    C    2448.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_AMINO_ACID_CHANGE=A174;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103514582_103514725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508584    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2481,202,0
4    103514741    rs4648050    T    C    602.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.19;QD=12.05;ReadPosRankSum=0.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508584    GT:AD:DP:GQ:PL    0/1:25,25:50:99:633,0,789
4    103533821    rs4648110    T    A    318.65    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.019;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.768;QD=12.75;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226574    GT:AD:DP:GQ:PL    0/1:13,12:25:99:349,0,428
4    103534560    rs3817685    C    G    173.55    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.665;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.0;QD=6.67;ReadPosRankSum=0.916;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226574    GT:AD:DP:GQ:PL    0/1:17,9:26:99:204,0,636
4    103537442    rs1609798    C    T    929.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226574    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:963,72,0
4    103553090    rs3194585    A    G    241.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505239    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:274,21,0
4    103553447    rs10719111    GA    G    1213.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=11;HaplotypeScore=144.4202;IndelType=D;MQ=60.43;MQ0=0;QD=20.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508141    GT:AD:DP:GQ:PL    1/1:7,51:58:99:1256,153,0
4    103553543    rs735403    C    T    204.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508141    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
4    103555803    rs2272695    G    C    466.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508141    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:499,36,0
4    103555821    rs2272696    G    A    715.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508141    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:748,57,0
4    103555992    rs2272697    A    G    1290.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=L733;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103555945_103556202;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505239    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1324,102,0
4    103556316    rs909349    T    C    33.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508141    GT:AD:DP:GQ:PL    1/1:0,4:4:6.01:65,6,0
4    103557077    rs2866413    G    A    1145.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=T644M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103557022_103557164;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505239    GT:AD:DP:GQ:PL    1/1:0,36:36:87.25:1178,87,0
4    103557192    rs4547797    C    T    1000.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226578    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1033,75,0
4    103557219    rs2866414    C    T    531.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226578    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:565,42,0
4    103557251    rs10027437    G    A    204.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226578    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
4    103571427    rs228622    C    A    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226578    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
4    103610872    rs227365    A    G    381.48    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.628;DB;DP=30;Dels=0.0;FS=2.483;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.674;QD=12.72;ReadPosRankSum=-0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226578    GT:AD:DP:GQ:PL    0/1:17,13:30:99:411,0,570
4    103611845    rs227368    C    T    1525.55    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=5.744;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-0.716;QD=15.57;ReadPosRankSum=-2.956;SNPEFF_AMINO_ACID_CHANGE=V196I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103611753_103611928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MANBA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505239    GT:AD:DP:GQ:PL    0/1:43,55:98:99:1556,0,1137
4    103722487    rs223426    G    A    36.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.1;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502563    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:66,0,70
4    103731067    rs3216718    CAAAT    C    1193.11    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=5.651;DB;DP=51;FS=0.0;HRun=0;HaplotypeScore=229.6603;IndelType=D;MQ=57.4;MQ0=0;MQRankSum=-1.675;QD=23.39;ReadPosRankSum=-0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321805    GT:AD:DP:GQ:PL    0/1:28,23:51:99:1232,0,2218
4    103732845    rs223414    A    C    42.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=7.12;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321805    GT:AD:DP:GQ:PL    0/1:3,3:6:72.72:73,0,94
4    103732866    rs223413    C    T    181.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=12;Dels=0.0;FS=7.368;HRun=1;HaplotypeScore=1.933;MQ=58.05;MQ0=0;MQRankSum=0.731;QD=15.12;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321805    GT:AD:DP:GQ:PL    0/1:4,8:12:93.04:211,0,93
4    103789810    rs223333    C    A    1511.16    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.327;DB;DP=95;Dels=0.0;FS=4.566;HRun=1;HaplotypeScore=0.7887;MQ=59.06;MQ0=0;MQRankSum=0.099;QD=15.74;ReadPosRankSum=1.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338145    GT:AD:DP:GQ:PL    0/1:40,55:95:99:1541,0,1160
4    103806308    rs35282200    CTA    C    353.57    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=49.0798;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=22.1;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CISD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273986    GT:AD:DP:GQ:PL    0/1:7,9:16:99:393,0,379
4    103822404    rs58374767    G    A    1278.46    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.522;DB;DP=249;DS;Dels=0.0;FS=3.053;HRun=0;HaplotypeScore=3.5456;MQ=35.48;MQ0=2;MQRankSum=-6.984;QD=5.13;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=A473V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103822085_103822489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296422    GT:AD:DP:GQ:PL    0/1:160,89:249:99:1308,0,4613
4    103826635    rs4699034    T    C    1307.29    MQFilter40    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=153;Dels=0.0;FS=0.815;HRun=0;HaplotypeScore=1.4972;MQ=39.67;MQ0=36;MQRankSum=-4.859;QD=8.54;ReadPosRankSum=1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510243    GT:AD:DP:GQ:PL    0/1:94,59:153:99:1337,0,1832
4    103827869    rs142397561    TC    T    201.07    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.256;DB;DP=33;FS=0.0;HRun=8;HaplotypeScore=91.5608;IndelType=D;MQ=53.05;MQ0=0;MQRankSum=1.401;QD=6.09;ReadPosRankSum=2.335;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510243    GT:AD:DP:GQ:PL    0/1:22,11:33:99:240,0,430
4    103866480    rs3974494    G    A    2249.30    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.779;DB;DP=164;Dels=0.0;FS=7.533;HRun=3;HaplotypeScore=1.6624;MQ=60.0;MQ0=0;MQRankSum=0.44;QD=13.72;ReadPosRankSum=1.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296422    GT:AD:DP:GQ:PL    0/1:83,81:164:99:2279,0,2515
4    103911069    rs2715591    C    A    1647.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9117;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_AMINO_ACID_CHANGE=Q33H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_103910957_103911098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296422    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1681,120,0
4    103911159    rs7672319    A    C    333.25    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=0.033;QD=15.15;ReadPosRankSum=-1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296422    GT:AD:DP:GQ:PL    0/1:10,12:22:99:363,0,340
4    103911222    rs6533051    C    G    118.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.95;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296422    GT:AD:DP:GQ:PL    0/1:3,4:7:99:149,0,106
4    103941410    rs71596388    G    GT    186.28    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=34;FS=0.0;HRun=14;HaplotypeScore=207.1116;IndelType=I;MQ=56.66;MQ0=0;MQRankSum=0.069;QD=5.48;ReadPosRankSum=0.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339611    GT:AD:DP:GQ:PL    0/1:21,9:34:99:225,0,186
4    104032264    rs2720449    G    A    310.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.945;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;MQRankSum=-0.643;QD=15.55;ReadPosRankSum=-0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:10,10:20:99:341,0,333
4    104041293    rs2720453    T    C    594.55    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=31;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.44;QD=19.18;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:12,19:31:99:625,0,339
4    104054686    rs2720460    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    104057248    rs2720463    G    A    623.61    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.163;QD=15.21;ReadPosRankSum=0.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:19,22:41:99:654,0,631
4    104059542    rs2243682    G    A    1602.24    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=2.77;DB;DP=113;Dels=0.0;FS=2.478;HRun=0;HaplotypeScore=0.8321;MQ=59.39;MQ0=0;MQRankSum=0.733;QD=14.18;ReadPosRankSum=-0.722;SNPEFF_AMINO_ACID_CHANGE=T1969M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_104059508_104059609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380026    GT:AD:DP:GQ:PL    0/1:56,57:113:99:1632,0,1600
4    104061762    rs2126470    T    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515478    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    104063071    rs2711898    C    T    464.33    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=32;Dels=0.0;FS=8.335;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=14.51;ReadPosRankSum=0.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515478    GT:AD:DP:GQ:PL    0/1:14,18:32:99:494,0,428
4    104066049    rs1031804    C    T    156.10    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=22.3;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515478    GT:AD:DP:GQ:PL    0/1:2,5:7:62.39:186,0,62
4    104066461    rs2615542    A    G    652.97    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.772;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.01;QD=13.06;ReadPosRankSum=-0.87;SNPEFF_AMINO_ACID_CHANGE=F1510L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_104066207_104066491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380026    GT:AD:DP:GQ:PL    0/1:28,22:50:99:683,0,799
4    104066890    rs2169508    T    A    563.12    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.73;DB;DP=29;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=19.42;ReadPosRankSum=-0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:11,18:29:99:593,0,370
4    104079424    rs2251322    C    T    592.34    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.287;DB;DP=42;Dels=0.0;FS=5.464;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.901;QD=14.1;ReadPosRankSum=0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:20,22:42:99:622,0,646
4    104082349    rs2251634    C    T    477.12    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=44;Dels=0.0;FS=1.194;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.012;QD=10.84;ReadPosRankSum=0.357;SNPEFF_AMINO_ACID_CHANGE=Q650;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_104082243_104082408;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380026    GT:AD:DP:GQ:PL    0/1:26,18:44:99:507,0,789
4    104102563    rs17217250    T    C    519.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.081;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.02;QD=10.59;ReadPosRankSum=-0.152;SNPEFF_AMINO_ACID_CHANGE=V338;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_104102494_104102613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:28,21:49:99:549,0,935
4    104103897    rs4698879    C    T    677.39    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.613;DB;DP=70;Dels=0.0;FS=0.955;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.452;QD=9.68;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:43,27:70:99:707,0,1365
4    104104165    rs116708592    T    C    45.35    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.58;QD=4.54;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:7,3:10:75.35:75,0,268
4    104107043    rs17283278    C    T    602.44    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.417;DB;DP=76;Dels=0.0;FS=0.953;HRun=2;HaplotypeScore=2.8237;MQ=60.0;MQ0=0;MQRankSum=-0.468;QD=7.93;ReadPosRankSum=-2.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:44,30:76:99:632,0,1270
4    104117191    rs2290943    A    G    300.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.36;DB;DP=30;Dels=0.0;FS=1.415;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.672;QD=10.01;ReadPosRankSum=-0.826;SNPEFF_AMINO_ACID_CHANGE=T81;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_104117077_104117195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265148    GT:AD:DP:GQ:PL    0/1:18,12:30:99:330,0,660
4    104510766    rs2765    G    A    648.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.71;MQ0=0;QD=36.01;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304883    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:681,51,0
4    106196092    rs2647243    C    T    3054.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5377;MQ=59.2;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380013    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3088,232,0
4    106196829    rs34402524    T    G    1185.72    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.114;DB;DP=81;Dels=0.0;FS=13.922;HRun=1;HaplotypeScore=5.7222;MQ=59.14;MQ0=0;MQRankSum=2.527;QD=14.64;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=L1721W;SNPEFF_CODON_CHANGE=tTg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_106196205_106200960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380013    GT:AD:DP:GQ:PL    0/1:40,41:81:99:1216,0,1079
4    106394920    .    C    A    222.77    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=22.28;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310267    GT:AD:DP:GQ:PL    0/1:3,7:10:55.48:253,0,55
4    106405731    rs28707313    T    C    442.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.62;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC004066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514975    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:476,36,0
4    106405736    rs28706361    C    T    523.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC004066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514975    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:556,42,0
4    106406256    rs10007134    C    T    582.67    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.3;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=33.89;MQ0=2;MQRankSum=-1.734;QD=22.41;ReadPosRankSum=-0.578;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC004066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514975    GT:AD:DP:GQ:PL    1/1:1,25:26:24.87:616,25,0
4    106474096    rs6533206    T    C    743.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_AMINO_ACID_CHANGE=T58;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_106473777_106474118;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265154    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:776,63,0
4    106819053    rs34712979    G    A    224.55    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.32;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9497;MQ=57.99;MQ0=0;MQRankSum=-0.249;QD=10.69;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305572    GT:AD:DP:GQ:PL    0/1:12,9:21:99:255,0,374
4    106848314    rs4546247    C    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305572    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
4    106848703    rs10856978    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305572    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    106861557    rs4627867    A    T    782.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504304    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:815,63,0
4    106861730    rs4340795    A    G    2336.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=I234V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_106861671_106861793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPNT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305572    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2370,187,0
4    106888263    rs4597836    A    C    179.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=54.85;MQ0=0;MQRankSum=1.222;QD=12.8;ReadPosRankSum=-0.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305572    GT:AD:DP:GQ:PL    0/1:6,8:14:99:209,0,189
4    107154273    rs13138528    T    C    839.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273980    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:873,66,0
4    107156365    rs7668276    C    G    338.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273980    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:372,27,0
4    107156635    rs7693448    T    C    34.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273980    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
4    107165685    rs58634260    TA    T    143.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=28.9337;IndelType=D;MQ=62.13;MQ0=0;QD=14.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000273980    GT:AD:DP:GQ:PL    1/1:1,9:10:23.88:186,24,0
4    107168431    rs3775091    G    C    1037.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.05;SNPEFF_AMINO_ACID_CHANGE=Q203E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_107168296_107168444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361687    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1070,78,0
4    107845794    rs17037102    C    T    1295.27    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=4.228;DB;DP=83;Dels=0.0;FS=3.431;HRun=0;HaplotypeScore=1.6637;MQ=59.16;MQ0=0;MQRankSum=-0.117;QD=15.61;ReadPosRankSum=1.004;SNPEFF_AMINO_ACID_CHANGE=R100Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_107845702_107845857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000510463    GT:AD:DP:GQ:PL    0/1:36,47:83:99:1325,0,995
4    107956446    rs73837553    A    G    59.06    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=5.91;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285311    GT:AD:DP:GQ:PL    0/1:7,3:10:89.05:89,0,228
4    108535335    rs9569    C    T    830.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514815    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:864,66,0
4    108535641    rs34183128    GA    G    177.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=9;HaplotypeScore=29.061;IndelType=D;MQ=57.66;MQ0=0;QD=17.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:2,8:10:24.01:220,24,0
4    108552603    rs4956112    A    T    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    108553048    rs3756270    G    C    549.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:583,42,0
4    108565805    rs17037943    G    A    150.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
4    108575989    rs3733633    G    A    3574.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=59.78;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=D321;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_108575851_108576056;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3575,271,0
4    108608100    rs148859271    CTCTAACACT    C    4062.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=0;HaplotypeScore=492.7945;IndelType=D;MQ=41.1;MQ0=0;QD=79.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506544    GT:AD:DP:GQ:PL    1/1:1,50:51:99:4062,151,0
4    108615226    rs67118154    CT    C    204.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=9;HaplotypeScore=24.7897;IndelType=D;MQ=61.07;MQ0=0;QD=20.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:1,9:10:27.01:247,27,0
4    108622241    rs17510783    C    T    3463.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.695;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.51;MQ0=0;MQRankSum=0.995;QD=36.45;ReadPosRankSum=-1.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:1,94:95:99:3463,219,0
4    108622475    rs13110240    C    T    2522.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8606;MQ=59.7;MQ0=0;MQRankSum=0.234;QD=33.19;ReadPosRankSum=-1.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:1,74:76:99:2556,175,0
4    108641119    rs2522435    C    A    122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:155,12,0
4    108641169    rs2074372    C    G    225.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:258,21,0
4    108641300    rs973126    T    C    1148.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.9;SNPEFF_AMINO_ACID_CHANGE=K12;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_108641276_108641608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,36:36:93.26:1181,93,0
4    108641317    rs1127006    G    A    1029.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.4;SNPEFF_AMINO_ACID_CHANGE=L7;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_108641276_108641608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,35:35:81.26:1062,81,0
4    108641437    rs2074374    C    G    242.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502431    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
4    108641464    rs1319253    A    G    69.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.04;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_108641276_108641608;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265174    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
4    108641465    rs2189154    A    C    68.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAPSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502431    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
4    108866058    rs10002671    G    A    59.04    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.9;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2U1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332884    GT:AD:DP:GQ:PL    0/1:7,3:10:89.04:89,0,210
4    108868515    rs6856745    T    C    400.62    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=31;Dels=0.0;FS=1.992;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.171;QD=12.92;ReadPosRankSum=0.987;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2U1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332884    GT:AD:DP:GQ:PL    0/1:14,17:31:99:431,0,455
4    108870764    rs76210762    T    A    31.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.93;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2U1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332884    GT:AD:DP:GQ:PL    0/1:2,2:4:61.69:62,0,73
4    108931039    rs4956145    T    C    2957.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=L86P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_108930915_108931043;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2991,235,0
4    108935770    rs7677408    T    C    883.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4983;MQ=57.65;MQ0=0;QD=12.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    1/1:2,69:72:93.01:917,93,0
4    108935871    rs4956147    G    A    291.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
4    108935970    rs4956149    C    G    74.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:107,9,0
4    108944579    rs4956032    C    T    957.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    1/1:0,26:27:72.24:990,72,0
4    108944732    rs17511214    G    A    546.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.757;DB;DP=30;Dels=0.0;FS=8.87;HRun=0;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=2.096;QD=18.23;ReadPosRankSum=-0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    0/1:12,18:30:99:577,0,407
4    108944821    rs4956033    C    T    249.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
4    108944846    rs4956034    A    G    209.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
4    108953281    rs66465280    CTCTTT    C    896.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=99.9278;IndelType=D;MQ=56.97;MQ0=0;QD=56.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507260    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:939,48,0
4    108955150    rs4422481    C    T    36.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309522    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:66,0,34
4    108985388    rs4613638    A    G    891.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265165    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:924,69,0
4    108991979    rs2276335    C    T    609.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265165    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:642,48,0
4    108999300    rs4956156    G    T    1680.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=32.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504950    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1714,132,0
4    108999366    rs4956157    G    A    1694.35    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=5.405;DB;DP=111;Dels=0.0;FS=5.66;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.496;QD=15.26;ReadPosRankSum=-2.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504950    GT:AD:DP:GQ:PL    0/1:53,58:111:99:1724,0,1486
4    109000536    rs6819640    T    C    466.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505293    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:499,36,0
4    109010207    rs16996935    A    G    1189.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265165    GT:AD:DP:GQ:PL    1/1:0,38:38:96.30:1223,96,0
4    109576843    rs2851380    G    T    254.86    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=23;Dels=0.0;FS=2.103;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.465;QD=11.08;ReadPosRankSum=1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505745    GT:AD:DP:GQ:PL    0/1:13,10:23:99:285,0,375
4    109578468    rs2575619    T    C    45.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361564    GT:AD:DP:GQ:PL    0/1:1,2:4:28.77:76,0,29
4    109578572    rs2851379    G    A    807.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361564    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:840,63,0
4    109579835    rs2575626    C    T    119.89    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.281;DB;DP=18;Dels=0.0;FS=2.823;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.197;QD=6.66;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510556    GT:AD:DP:GQ:PL    0/1:13,5:18:99:150,0,397
4    109664819    rs6533381    T    C    168.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503912    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
4    109735133    rs2305436    T    C    1318.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1352,111,0
4    109735146    rs2305435    T    G    1121.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1154,90,0
4    109735209    rs11733727    T    C    516.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:549,48,0
4    109748227    rs13104307    C    T    465.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:499,36,0
4    109759112    rs28616003    G    A    98.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=55.69;MQ0=0;MQRankSum=0.361;QD=9.81;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:6,4:10:99:128,0,179
4    109759469    rs4956063    C    T    209.48    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=1.021;QD=11.03;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:10,9:19:99:239,0,296
4    109759534    rs4956215    C    T    73.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.44;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,143
4    109762918    rs11942576    C    A    364.29    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=15.18;ReadPosRankSum=1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:10,14:24:99:394,0,276
4    109766177    rs10015534    G    C    376.10    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.595;QD=18.8;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:9,11:20:99:406,0,283
4    109766290    rs11098004    T    G    1597.47    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.699;DB;DP=112;Dels=0.0;FS=3.978;HRun=1;HaplotypeScore=0.5784;MQ=59.79;MQ0=0;MQRankSum=-1.619;QD=14.26;ReadPosRankSum=-0.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:55,57:112:99:1627,0,1784
4    109767453    rs5860952    C    CA    410.78    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.128;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=58.7173;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.415;QD=15.8;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:15,11:26:99:450,0,551
4    109769844    rs13130308    C    T    61.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.67;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:4,4:8:91.34:91,0,148
4    109769899    rs13135591    C    T    416.90    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=31;Dels=0.0;FS=4.041;HRun=0;HaplotypeScore=0.9958;MQ=59.25;MQ0=0;MQRankSum=-0.336;QD=13.45;ReadPosRankSum=-1.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:16,15:31:99:447,0,537
4    109774291    rs1563002    A    T    72.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
4    109780921    rs11725279    G    T    222.26    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.433;DB;DP=17;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=13.07;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:8,9:17:99:252,0,217
4    109782249    rs13133634    C    T    301.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:334,27,0
4    109790373    rs72309772    TAAATA    T    398.61    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=99.0831;IndelType=D;MQ=58.36;MQ0=0;MQRankSum=0.696;QD=26.57;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:7,8:15:99:438,0,151
4    109790377    rs11334119    TA    T    268.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=5;HaplotypeScore=75.2162;IndelType=D;MQ=59.9;MQ0=0;QD=20.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:8,5:13:38.15:311,38,0
4    109811003    rs12641411    T    C    286.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:320,27,0
4    109817962    rs10856995    C    T    370.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:404,30,0
4    109820195    rs6853368    C    A    210.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.72;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
4    109820202    rs6853372    C    T    173.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=64.19;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
4    109820446    rs6830868    T    C    276.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:310,24,0
4    109820477    rs6533393    T    C    150.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
4    109839098    rs1025147    C    T    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    109858749    rs10645267    A    ACC    239.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=12.0633;IndelType=I;MQ=62.13;MQ0=0;QD=47.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:281,15,0
4    109895718    rs111509333    GA    G    1066.43    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=6.657;DB;DP=110;FS=7.376;HRun=7;HaplotypeScore=302.7334;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.135;QD=9.69;ReadPosRankSum=0.149;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_109895689_109895719;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:64,46:110:99:1105,0,1719
4    109931455    rs5860962    AC    A    501.32    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=5.226;DB;DP=39;FS=1.495;HRun=2;HaplotypeScore=165.5677;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.998;QD=12.85;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:23,16:39:99:540,0,814
4    109969183    rs3096481    T    C    166.44    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=15.13;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,171
4    109969337    rs79275327    G    T    469.29    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.323;DB;DP=33;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=1.351;QD=14.22;ReadPosRankSum=0.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:17,16:33:99:499,0,504
4    109969456    rs3096482    T    A    101.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=8.44;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:6,6:12:99:131,0,214
4    109971414    rs1863292    T    A    65.39    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=5.94;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333642    GT:AD:DP:GQ:PL    0/1:6,5:11:95.38:95,0,218
4    110223320    rs1859143    C    T    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL25A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399126    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    110384047    rs113411011    G    GCTTTT    4964.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=0;HaplotypeScore=204.3155;IndelType=I;MQ=56.66;MQ0=0;QD=84.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:1,49:59:99:4964,175,0
4    110384790    rs33911248    A    G    1597.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_AMINO_ACID_CHANGE=P289;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110384057_110384800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1631,126,0
4    110384938    rs10002595    T    C    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
4    110427759    rs41277037    G    T    1134.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,33:33:96.30:1167,96,0
4    110433282    rs35283007    G    GT    718.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=11;HaplotypeScore=73.8024;IndelType=I;MQ=60.1;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:6,25:31:75.15:761,75,0
4    110437530    rs35199349    C    T    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
4    110445826    rs35906404    TATC    T    298.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=64.4663;IndelType=D;MQ=60.38;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:341,24,0
4    110445835    rs34224638    G    A    307.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.25;MQ0=0;QD=25.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:340,27,0
4    110446199    rs6812469    A    G    451.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:484,39,0
4    110446454    rs6812906    A    G    1133.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,36:36:90.28:1167,90,0
4    110448374    rs71594190    CAA    C    102.67    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;FS=0.0;HRun=14;HaplotypeScore=37.9517;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=0.248;QD=11.41;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    0/1:2,6:9:0.39:140,0,0
4    110448702    rs6827006    A    G    127.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
4    110451678    rs9994676    C    T    499.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:533,39,0
4    110453908    rs34727629    C    G    530.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:563,42,0
4    110454039    rs35940980    T    C    78.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
4    110454861    rs34133579    C    G    1472.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265175    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1506,114,0
4    110460884    rs15821    C    A    1610.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399100    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1644,123,0
4    110580084    rs1543812    G    T    133.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC109B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394650    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
4    110581626    .    A    G    41.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC109B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515114    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
4    110585645    rs767598    G    A    218.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC109B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515114    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
4    110603784    rs3733611    T    C    2006.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.559;QD=32.36;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=S166;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110603738_110603898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC109B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394650    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2039,131,0
4    110606394    rs34644455    C    CT    1720.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.48;DB;DP=61;FS=4.771;HRun=9;HaplotypeScore=151.2001;IndelType=I;MQ=58.43;MQ0=1;MQRankSum=-1.354;QD=27.74;ReadPosRankSum=0.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265164    GT:AD:DP:GQ:PL    1/1:6,56:61:99:1762,139,0
4    110606713    rs2285712    T    C    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265164    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
4    110608536    rs13151303    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265164    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    110615913    rs3181345    C    T    205.95    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.537;QD=10.84;ReadPosRankSum=-1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265164    GT:AD:DP:GQ:PL    0/1:11,8:19:99:236,0,358
4    110619006    rs5030552    T    C    333.01    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=22.2;ReadPosRankSum=0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265164    GT:AD:DP:GQ:PL    0/1:4,11:15:99:363,0,121
4    110619534    rs2301717    T    G    1744.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.228;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=1.165;QD=31.71;ReadPosRankSum=-0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265164    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1777,107,0
4    110624447    rs5030520    C    G    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265164    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,71
4    110635488    rs138645781    G    GT    4098.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622;DB;DP=98;FS=0.0;HRun=1;HaplotypeScore=194.3227;IndelType=I;MQ=60.27;MQ0=0;MQRankSum=1.622;QD=41.82;ReadPosRankSum=1.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502772    GT:AD:DP:GQ:PL    1/1:6,91:98:99:4099,244,0
4    110638810    rs2285714    C    T    875.23    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.631;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7786;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=10.81;ReadPosRankSum=-0.313;SNPEFF_AMINO_ACID_CHANGE=E113;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110638704_110638869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G12A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502283    GT:AD:DP:GQ:PL    0/1:47,34:81:99:905,0,1469
4    110661937    rs551    G    A    2242.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_AMINO_ACID_CHANGE=L356;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110661854_110661958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540104    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2276,168,0
4    110670807    rs7441380    G    C    920.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=38.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394634    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:954,72,0
4    110678819    rs5860990    CA    C    182.74    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=26.5515;IndelType=D;MQ=47.84;MQ0=0;MQRankSum=-1.866;QD=18.27;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394634    GT:AD:DP:GQ:PL    0/1:4,6:10:99:222,0,162
4    110678925    rs11098044    T    C    583.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=44.74;MQ0=0;QD=30.73;SNPEFF_AMINO_ACID_CHANGE=T300A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110678919_110678939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394634    GT:AD:DP:GQ:PL    1/1:0,19:19:51.13:617,51,0
4    110678979    .    T    TTTTAA    1051.41    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=0;HaplotypeScore=100.7408;IndelType=I;MQ=29.64;MQ0=0;QD=75.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394634    GT:AD:DP:GQ:PL    1/1:2,12:14:36.12:1093,36,0
4    110679002    rs7437142    G    T    250.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.57;MQ0=0;QD=19.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394634    GT:AD:DP:GQ:PL    1/1:0,13:13:24.07:284,24,0
4    110681092    .    T    TACAA    594.04    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=58.7504;IndelType=I;MQ=61.66;MQ0=0;QD=66.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510800    GT:AD:DP:GQ:PL    1/1:0,8:9:27.09:636,27,0
4    110681121    rs7683027    G    A    522.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510800    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:555,42,0
4    110681505    rs2298749    C    T    989.76    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=82;Dels=0.0;FS=6.337;HRun=0;HaplotypeScore=1.81;MQ=59.72;MQ0=0;MQRankSum=-0.575;QD=12.07;ReadPosRankSum=1.193;SNPEFF_AMINO_ACID_CHANGE=S250;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110681426_110681536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536228    GT:AD:DP:GQ:PL    0/1:46,36:82:99:1020,0,1245
4    110681618    rs4382037    C    T    722.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510800    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:756,60,0
4    110682953    rs17610314    A    G    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510800    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,103
4    110686001    rs11098045    A    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394634    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
4    110737389    rs2276326    T    C    293.27    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.505;DB;DP=39;Dels=0.0;FS=1.384;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.852;QD=7.52;ReadPosRankSum=-0.765;SNPEFF_AMINO_ACID_CHANGE=G23;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110737309_110737534;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226796    GT:AD:DP:GQ:PL    0/1:24,15:39:99:323,0,735
4    110737549    rs6828254    G    A    1674.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226796    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1708,126,0
4    110745425    rs3188897    G    A    137.85    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=15.32;ReadPosRankSum=-1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503671    GT:AD:DP:GQ:PL    0/1:2,7:9:62.92:168,0,63
4    110758499    .    C    CT    359.79    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DP=18;FS=0.0;HRun=1;HaplotypeScore=41.507;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=19.99;ReadPosRankSum=2.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317735    GT:AD:DP:GQ:PL    0/1:8,10:18:99:399,0,222
4    110763930    rs6842245    C    T    129.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317735    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
4    110764953    rs4698796    G    A    41.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317735    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
4    110765361    rs7681770    T    G    5928.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=59.43;MQ0=0;QD=36.82;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317735    GT:AD:DP:GQ:PL    1/1:0,161:161:99:5928,424,0
4    110765372    rs7657133    A    G    4946.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.36;MQ0=0;QD=34.35;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317735    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4946,367,0
4    110765496    rs6839680    T    C    270.49    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=58.95;MQ0=0;MQRankSum=0.528;QD=12.29;ReadPosRankSum=0.81;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317735    GT:AD:DP:GQ:PL    0/1:10,12:22:99:300,0,352
4    110773067    rs4698797    G    A    2350.71    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.275;DB;DP=153;Dels=0.0;FS=2.03;HRun=1;HaplotypeScore=2.9737;MQ=59.73;MQ0=0;MQRankSum=-0.397;QD=15.36;ReadPosRankSum=-0.172;SNPEFF_AMINO_ACID_CHANGE=S130N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110772486_110773132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379920    GT:AD:DP:GQ:PL    0/1:73,80:153:99:2381,0,2104
4    110786517    rs7679303    A    G    299.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=26;Dels=0.0;FS=3.628;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=11.54;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327908    GT:AD:DP:GQ:PL    0/1:13,13:26:99:330,0,354
4    110790625    rs6841737    T    C    118.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327908    GT:AD:DP:GQ:PL    0/1:2,4:6:55.72:148,0,56
4    110790911    rs764205    A    T    1353.60    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.094;DB;DP=94;Dels=0.0;FS=5.527;HRun=1;HaplotypeScore=2.4239;MQ=59.75;MQ0=0;MQRankSum=-0.484;QD=14.4;ReadPosRankSum=0.562;SNPEFF_AMINO_ACID_CHANGE=M153L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110790801_110793471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327908    GT:AD:DP:GQ:PL    0/1:45,47:94:99:1384,0,1565
4    110865271    rs10470911    T    G    296.04    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=17.41;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502723    GT:AD:DP:GQ:PL    0/1:8,9:17:99:326,0,267
4    110866178    rs4698755    A    C    133.60    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=8.35;ReadPosRankSum=-0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502723    GT:AD:DP:GQ:PL    0/1:11,5:16:99:164,0,359
4    110866442    rs4698756    G    A    264.06    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=19;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=13.9;ReadPosRankSum=0.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502723    GT:AD:DP:GQ:PL    0/1:10,9:19:99:294,0,276
4    110866508    rs4698800    C    T    283.66    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=21.82;ReadPosRankSum=0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502723    GT:AD:DP:GQ:PL    0/1:4,9:13:89.79:314,0,90
4    110885868    rs2190907    T    C    144.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.43;MQ0=0;MQRankSum=-0.583;QD=12.05;ReadPosRankSum=1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504633    GT:AD:DP:GQ:PL    0/1:6,6:12:99:175,0,218
4    110896050    rs10002971    A    C    127.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=12.78;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265171    GT:AD:DP:GQ:PL    0/1:5,5:10:99:158,0,180
4    110897535    rs11568994    G    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502579    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
4    110901198    rs2237051    G    A    898.06    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.967;DB;DP=66;Dels=0.0;FS=2.117;HRun=1;HaplotypeScore=0.8321;MQ=59.37;MQ0=0;MQRankSum=0.507;QD=13.61;ReadPosRankSum=-1.467;SNPEFF_AMINO_ACID_CHANGE=M666I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110901128_110901295;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509793    GT:AD:DP:GQ:PL    0/1:36,30:66:99:928,0,1174
4    110904448    rs6824594    C    T    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265171    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:71,0,29
4    110910016    rs2074390    G    A    37.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511228    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:67,0,29
4    110914119    rs11569069    G    A    38.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.08;MQ0=0;QD=19.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265171    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
4    110914427    rs4698803    A    T    1017.24    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.904;DB;DP=74;Dels=0.0;FS=7.896;HRun=0;HaplotypeScore=0.734;MQ=59.61;MQ0=0;MQRankSum=1.357;QD=13.75;ReadPosRankSum=-0.481;SNPEFF_AMINO_ACID_CHANGE=E878V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_110914403_110914525;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509793    GT:AD:DP:GQ:PL    0/1:38,36:74:99:1047,0,1168
4    111026520    rs3733623    A    G    383.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.106;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=12.8;ReadPosRankSum=-1.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302274    GT:AD:DP:GQ:PL    0/1:15,15:30:99:414,0,523
4    111219385    rs244051    A    C    219.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC005187.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502364    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:252,18,0
4    111219655    .    TATGTATGCATGC    T    1082.37    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.363;DP=26;FS=6.99;HRun=0;HaplotypeScore=376.1402;IndelType=D;MQ=54.18;MQ0=0;MQRankSum=-0.713;QD=41.63;ReadPosRankSum=2.887;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC005187.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390775    GT:AD:DP:GQ:PL    0/1:8,18:26:99:1121,0,116
4    111397585    rs61735573    G    A    565.42    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.907;QD=8.97;ReadPosRankSum=0.759;SNPEFF_AMINO_ACID_CHANGE=E5;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_111397229_111398214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPEP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265162    GT:AD:DP:GQ:PL    0/1:41,22:63:99:595,0,1324
4    111398208    rs10004516    A    G    1286.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=36.75;SNPEFF_AMINO_ACID_CHANGE=Q213R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_111397229_111398214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPEP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265162    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1319,99,0
4    111398252    rs11734805    C    A    373.12    PASS    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=1.488;QD=26.65;ReadPosRankSum=0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265162    GT:AD:DP:GQ:PL    0/1:1,13:14:2.46:402,0,2
4    111430638    rs3817391    C    T    231.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510961    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:265,21,0
4    111436741    rs3733596    C    G    209.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265162    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
4    111474659    rs12501626    C    A    886.19    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=54;Dels=0.0;FS=4.105;HRun=0;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=-0.496;QD=16.41;ReadPosRankSum=-1.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265162    GT:AD:DP:GQ:PL    0/1:22,31:54:99:916,0,734
4    111781650    rs10213399    C    T    3683.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=34.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR297;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401142    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3683,274,0
4    113178894    rs10572978    ATTTGT    A    778.17    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=4.14;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=143.3247;IndelType=D;MQ=54.34;MQ0=0;MQRankSum=-0.797;QD=29.93;ReadPosRankSum=-0.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1AR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502954    GT:AD:DP:GQ:PL    0/1:12,14:26:99:817,0,1051
4    113199075    rs701759    A    G    218.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=27;Dels=0.0;FS=3.488;HRun=0;HaplotypeScore=0.9734;MQ=59.14;MQ0=0;MQRankSum=0.231;QD=8.08;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=Y166;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_113196783_113199590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIFA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361717    GT:AD:DP:GQ:PL    0/1:18,9:27:99:248,0,591
4    113199691    rs6834298    C    T    79.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.96;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361717    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
4    113344925    rs1989926    C    T    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177648    GT:AD:DP:GQ:PL    0/1:1,2:3:34.29:71,0,34
4    113346665    rs916867    A    G    99.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=8.31;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177648    GT:AD:DP:GQ:PL    0/1:8,4:12:99:130,0,287
4    113346714    rs916868    T    C    724.94    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=3.08;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.01;QD=16.86;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177648    GT:AD:DP:GQ:PL    0/1:20,23:43:99:755,0,696
4    113347496    rs9994944    A    G    245.94    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.15;QD=16.4;ReadPosRankSum=0.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509209    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,228
4    113347609    rs35182774    C    CT    624.01    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.226;DB;DP=63;FS=2.439;HRun=10;HaplotypeScore=206.6504;IndelType=I;MQ=58.87;MQ0=0;MQRankSum=-0.682;QD=9.9;ReadPosRankSum=1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509209    GT:AD:DP:GQ:PL    0/1:36,26:63:99:663,0,552
4    113352397    rs2074388    G    A    632.65    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.636;DB;DP=51;Dels=0.0;FS=4.146;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.124;QD=12.4;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=G487D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_113351604_113353737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504176    GT:AD:DP:GQ:PL    0/1:30,21:51:99:663,0,944
4    113352628    rs13148353    A    G    961.30    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.903;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.76;MQ0=0;MQRankSum=0.485;QD=12.17;ReadPosRankSum=1.618;SNPEFF_AMINO_ACID_CHANGE=H564R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_113351604_113353737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504176    GT:AD:DP:GQ:PL    0/1:46,33:79:99:991,0,1371
4    113352899    rs2074379    G    A    1187.01    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.936;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=15.03;ReadPosRankSum=1.356;SNPEFF_AMINO_ACID_CHANGE=M654I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_113351604_113353737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504176    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1217,0,1101
4    113353285    rs11726117    T    C    599.83    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.09;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2337;MQ=59.55;MQ0=0;MQRankSum=0.332;QD=11.76;ReadPosRankSum=2.201;SNPEFF_AMINO_ACID_CHANGE=M783T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_113351604_113353737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504176    GT:AD:DP:GQ:PL    0/1:29,22:51:99:630,0,885
4    113353842    rs6841595    A    C    261.89    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=-0.227;QD=16.37;ReadPosRankSum=-0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512847    GT:AD:DP:GQ:PL    0/1:5,11:16:99:292,0,134
4    113356116    rs2023827    T    C    79.05    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=8.78;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177648    GT:AD:DP:GQ:PL    0/1:5,4:9:99:109,0,178
4    113356495    rs11098156    G    T    866.56    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.99;DB;DP=65;Dels=0.0;FS=2.931;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.612;QD=13.33;ReadPosRankSum=-1.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177648    GT:AD:DP:GQ:PL    0/1:33,32:65:99:897,0,1034
4    113359703    rs231247    A    G    511.78    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.497;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.481;QD=8.39;ReadPosRankSum=-1.15;SNPEFF_AMINO_ACID_CHANGE=R1006;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_113359640_113359802;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504176    GT:AD:DP:GQ:PL    0/1:37,24:61:99:542,0,1179
4    113361938    rs11098157    G    A    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=63.51;MQ0=0;MQRankSum=0.736;QD=12.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177648    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
4    113362316    rs1486868    A    G    1518.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.25;MQ0=0;MQRankSum=2.112;QD=12.87;ReadPosRankSum=-1.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177648    GT:AD:DP:GQ:PL    0/1:59,59:118:99:1549,0,1913
4    113377710    rs231267    T    G    1602.69    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.298;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5572;MQ=59.79;MQ0=0;MQRankSum=1.069;QD=18.42;ReadPosRankSum=-1.043;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC004049.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514955    GT:AD:DP:GQ:PL    0/1:32,55:87:99:1633,0,1035
4    113436044    rs901474    T    G    166.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.85;SNPEFF_AMINO_ACID_CHANGE=G196;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_113434672_113436632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEUROG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313341    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:200,18,0
4    113479135    rs6533627    G    A    195.79    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.24;ReadPosRankSum=-1.799;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473015    GT:AD:DP:GQ:PL    0/1:9,7:16:99:226,0,317
4    113483446    rs6838559    C    A    788.72    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.558;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=20.22;ReadPosRankSum=1.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505019    GT:AD:DP:GQ:PL    0/1:15,24:39:99:819,0,437
4    113502707    rs58897804    T    G    249.90    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.778;QD=8.62;ReadPosRankSum=0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505019    GT:AD:DP:GQ:PL    0/1:20,9:29:99:280,0,637
4    113539969    rs7696816    T    C    1327.01    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=89;Dels=0.0;FS=0.813;HRun=0;HaplotypeScore=1.5592;MQ=59.74;MQ0=0;MQRankSum=-0.429;QD=14.91;ReadPosRankSum=0.021;SNPEFF_AMINO_ACID_CHANGE=N379S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_113538596_113540846;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445203    GT:AD:DP:GQ:PL    0/1:46,43:89:99:1357,0,1487
4    113554385    rs13104310    A    T    874.58    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=0.503;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.503;QD=19.44;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264370    GT:AD:DP:GQ:PL    0/1:17,28:45:99:905,0,495
4    113568743    rs71597609    A    ATTTTAATTAATTAGT    2581.65    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.186;DB;DP=51;FS=1.412;HRun=0;HaplotypeScore=469.3618;IndelType=I;MQ=53.61;MQ0=0;MQRankSum=-2.34;QD=50.62;ReadPosRankSum=-0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503316    GT:AD:DP:GQ:PL    0/1:32,16:51:99:2621,0,1425
4    113569135    rs13136737    G    T    966.73    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=3.052;DB;DP=78;Dels=0.0;FS=0.88;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=0.407;QD=12.39;ReadPosRankSum=1.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503316    GT:AD:DP:GQ:PL    0/1:45,33:78:99:997,0,1183
4    113570639    rs4513633    C    A    336.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503316    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:369,27,0
4    113709293    rs7662801    G    A    401.41    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.204;DB;DP=41;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=2.5275;MQ=58.6;MQ0=0;MQRankSum=0.235;QD=9.79;ReadPosRankSum=0.206;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-119H12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482859    GT:AD:DP:GQ:PL    0/1:22,18:41:99:431,0,582
4    113709346    rs7662486    C    T    485.94    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=41;Dels=0.0;FS=2.835;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.477;QD=11.85;ReadPosRankSum=1.614;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-119H12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482859    GT:AD:DP:GQ:PL    0/1:24,17:41:99:516,0,711
4    113709807    rs6820364    C    A    606.07    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.561;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3609;MQ=38.94;MQ0=3;MQRankSum=1.879;QD=18.37;ReadPosRankSum=-0.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-119H12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482859    GT:AD:DP:GQ:PL    0/1:11,22:33:99:636,0,160
4    114028149    rs17625836    G    A    220.16    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.331;QD=10.01;ReadPosRankSum=-0.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264366    GT:AD:DP:GQ:PL    0/1:14,8:22:99:250,0,501
4    114135112    rs10682641    T    TTA    229.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=33.8886;IndelType=I;MQ=33.14;MQ0=1;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264366    GT:AD:DP:GQ:PL    1/1:1,6:6:18.03:271,18,0
4    114135124    rs11394309    A    AT    149.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=12;HaplotypeScore=38.1858;IndelType=I;MQ=31.0;MQ0=2;QD=18.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264366    GT:AD:DP:GQ:PL    1/1:2,6:6:18.05:192,18,0
4    114159052    rs362498    A    C    91.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508613    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
4    114267023    rs9968405    G    A    2022.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504887    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2055,150,0
4    114269552    rs2272235    G    A    173.93    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=15.81;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264366    GT:AD:DP:GQ:PL    0/1:5,6:11:99:204,0,170
4    114274007    rs34053670    T    G    92.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.44;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512298    GT:AD:DP:GQ:PL    0/1:2,4:6:60.57:123,0,61
4    114275243    rs33966911    C    T    1447.12    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.724;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;MQRankSum=0.45;QD=15.73;ReadPosRankSum=0.251;SNPEFF_AMINO_ACID_CHANGE=P1790;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_114274201_114280455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264366    GT:AD:DP:GQ:PL    0/1:42,50:92:99:1477,0,1408
4    114276880    rs28377576    T    C    947.20    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=0.681;DB;DP=71;Dels=0.0;FS=6.493;HRun=0;HaplotypeScore=4.5063;MQ=59.68;MQ0=0;MQRankSum=0.46;QD=13.34;ReadPosRankSum=-0.448;SNPEFF_AMINO_ACID_CHANGE=V2336A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_114274201_114280455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264366    GT:AD:DP:GQ:PL    0/1:35,36:71:99:977,0,1075
4    114276884    rs3733615    A    G    897.18    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=74;Dels=0.0;FS=8.219;HRun=1;HaplotypeScore=5.3384;MQ=59.38;MQ0=0;MQRankSum=0.304;QD=12.12;ReadPosRankSum=-0.406;SNPEFF_AMINO_ACID_CHANGE=Q2337;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_114274201_114280455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264366    GT:AD:DP:GQ:PL    0/1:38,36:74:99:927,0,1198
4    114279422    rs10013743    A    G    878.79    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=58;Dels=0.0;FS=5.638;HRun=1;HaplotypeScore=0.6651;MQ=59.2;MQ0=0;MQRankSum=0.14;QD=15.15;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=E226;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_114278745_114280455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505342    GT:AD:DP:GQ:PL    0/1:26,31:58:99:909,0,806
4    114279674    rs34270799    C    A    1179.04    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.496;DB;DP=93;Dels=0.0;FS=1.722;HRun=3;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;MQRankSum=-0.778;QD=12.68;ReadPosRankSum=-0.346;SNPEFF_AMINO_ACID_CHANGE=S310R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_114278745_114280455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505342    GT:AD:DP:GQ:PL    0/1:51,42:93:99:1209,0,1694
4    114284645    rs35728190    C    T    336.24    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.697;DB;DP=32;Dels=0.0;FS=3.64;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.642;QD=10.51;ReadPosRankSum=-0.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264366    GT:AD:DP:GQ:PL    0/1:20,12:32:99:366,0,628
4    114289147    rs55966162    A    G    84.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508007    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:117,12,0
4    114294308    rs2293324    T    C    1505.04    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.398;DB;DP=106;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=-0.809;QD=14.2;ReadPosRankSum=-0.492;SNPEFF_AMINO_ACID_CHANGE=H1797;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_114294246_114294329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343056    GT:AD:DP:GQ:PL    0/1:48,58:106:99:1535,0,1494
4    114309839    rs6533681    C    T    493.30    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.423;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.776;QD=11.21;ReadPosRankSum=-1.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357077    GT:AD:DP:GQ:PL    0/1:26,18:44:99:523,0,690
4    114426077    rs34376701    CA    C    268.79    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=29;FS=0.0;HRun=13;HaplotypeScore=113.0573;IndelType=D;MQ=58.78;MQ0=0;MQRankSum=0.173;QD=9.27;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296402    GT:AD:DP:GQ:PL    0/1:10,17:29:99:308,0,128
4    114426315    rs4834348    G    T    235.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=13.06;ReadPosRankSum=1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296402    GT:AD:DP:GQ:PL    0/1:10,8:18:99:265,0,360
4    114530150    rs3764805    T    A    107.13    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.3;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296402    GT:AD:DP:GQ:PL    0/1:3,4:7:93.83:137,0,94
4    114530230    rs3764806    G    A    238.82    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.833;QD=11.37;ReadPosRankSum=-1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296402    GT:AD:DP:GQ:PL    0/1:13,8:21:99:269,0,400
4    114823191    rs2374215    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509829    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
4    115543915    rs140050532    A    AT    150.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=10.955;IndelType=I;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310836    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:192,18,0
4    115544714    rs6851610    A    G    2406.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=P226;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_115544035_115544858;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310836    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2439,190,0
4    115585029    rs11731984    C    G    332.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310836    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:366,30,0
4    115586696    rs4833463    A    G    92.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310836    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
4    115589159    rs6831964    C    T    491.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310836    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:525,39,0
4    115589302    rs11098261    A    G    1244.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=I368M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_115589241_115589460;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310836    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1278,93,0
4    115748918    rs10693090    A    AT    357.85    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.305;DB;DP=38;FS=1.624;HRun=10;HaplotypeScore=93.1451;IndelType=I;MQ=60.4;MQ0=0;MQRankSum=-0.162;QD=9.42;ReadPosRankSum=-1.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504854    GT:AD:DP:GQ:PL    0/1:22,16:38:99:397,0,319
4    115858597    rs56053034    C    T    766.89    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=3.043;DB;DP=51;Dels=0.0;FS=2.838;HRun=0;HaplotypeScore=1.4105;MQ=59.55;MQ0=0;MQRankSum=0.838;QD=15.04;ReadPosRankSum=-0.97;SNPEFF_AMINO_ACID_CHANGE=P428;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_115858474_115858659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264363    GT:AD:DP:GQ:PL    0/1:26,25:51:99:797,0,715
4    115898522    rs13115130    A    T    405.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264363    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:439,33,0
4    118975146    rs13152576    C    T    938.51    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=91;Dels=0.0;FS=1.82;HRun=1;HaplotypeScore=1.7883;MQ=59.24;MQ0=0;MQRankSum=0.479;QD=10.31;ReadPosRankSum=-0.221;SNPEFF_AMINO_ACID_CHANGE=I27;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_118974911_118976046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    0/1:56,35:91:99:968,0,1765
4    118976318    rs7687849    C    T    877.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:911,69,0
4    118976492    rs7688063    A    G    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    119026033    rs12508017    T    A    427.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:461,36,0
4    119035948    rs5861378    T    TC    1334.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=7;HaplotypeScore=96.9167;IndelType=I;MQ=60.77;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    1/1:2,38:40:99:1377,114,0
4    119064593    rs10033308    G    A    121.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
4    119064668    rs3749506    G    A    809.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    1/1:0,28:28:72.20:842,72,0
4    119154201    rs13138385    T    C    1754.27    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=2.308;DB;DP=116;Dels=0.0;FS=0.695;HRun=2;HaplotypeScore=0.9996;MQ=59.64;MQ0=0;MQRankSum=1.049;QD=15.12;ReadPosRankSum=1.267;SNPEFF_AMINO_ACID_CHANGE=H537;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_119154167_119154246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433996    GT:AD:DP:GQ:PL    0/1:57,59:116:99:1784,0,1739
4    119161619    rs641962    A    G    740.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433996    GT:AD:DP:GQ:PL    1/1:1,21:22:57.19:774,57,0
4    119161795    rs617430    G    A    480.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.258;DB;DP=40;Dels=0.0;FS=1.237;HRun=0;HaplotypeScore=1.8245;MQ=59.44;MQ0=0;MQRankSum=-0.906;QD=11.73;ReadPosRankSum=2.367;SNPEFF_AMINO_ACID_CHANGE=P745;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_119161679_119161849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    0/1:20,20:40:99:511,0,596
4    119174563    rs609512    T    A    115.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    0/1:2,4:6:61.26:146,0,61
4    119174640    rs5861382    CT    C    751.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=11;HaplotypeScore=107.961;IndelType=D;MQ=59.96;MQ0=0;QD=20.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    1/1:2,32:36:97.91:794,98,0
4    119174961    .    T    C    30.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.04;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296499    GT:AD:DP:GQ:PL    0/1:3,2:5:60.21:60,0,109
4    119200274    rs658642    C    T    579.83    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.32;DB;DP=33;Dels=0.0;FS=3.081;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=17.57;ReadPosRankSum=0.994;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296498    GT:AD:DP:GQ:PL    0/1:15,18:33:99:610,0,493
4    119200317    rs17594468    G    C    566.39    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.256;QD=11.11;ReadPosRankSum=0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296498    GT:AD:DP:GQ:PL    0/1:28,23:51:99:596,0,829
4    119203479    rs71608358    T    C    336.92    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.923;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.73;MQ0=0;MQRankSum=1.154;QD=15.31;ReadPosRankSum=0.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510903    GT:AD:DP:GQ:PL    0/1:10,12:22:99:367,0,347
4    119216780    rs35774897    A    G    141.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=17.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296498    GT:AD:DP:GQ:PL    0/1:2,6:8:59.93:172,0,60
4    119217114    rs788665    C    G    662.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296498    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:695,54,0
4    119237348    rs2292597    T    C    844.38    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=58;Dels=0.0;FS=3.614;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.615;QD=14.56;ReadPosRankSum=0.521;SNPEFF_AMINO_ACID_CHANGE=Q427;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_119237337_119237478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296498    GT:AD:DP:GQ:PL    0/1:28,30:58:99:874,0,952
4    119259199    rs17516526    C    G    104.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.35;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296498    GT:AD:DP:GQ:PL    0/1:2,4:6:67.92:134,0,68
4    119409830    rs112805522    A    G    462.56    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=56;Dels=0.0;FS=1.659;HRun=0;HaplotypeScore=0.0;MQ=32.43;MQ0=7;MQRankSum=-0.769;QD=8.26;ReadPosRankSum=-1.309;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502249    GT:AD:DP:GQ:PL    0/1:32,24:56:99:493,0,674
4    119414256    rs113100030    AAGG    A    174.86    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=35.0354;IndelType=D;MQ=54.48;MQ0=0;MQRankSum=0.322;QD=17.49;ReadPosRankSum=-0.322;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502249    GT:AD:DP:GQ:PL    0/1:4,6:9:99:214,0,173
4    119414828    rs145087150    G    A    284.54    MQFilter40;QDFilter2    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.539;DB;DP=176;Dels=0.0;FS=1.998;HRun=0;HaplotypeScore=1.9411;MQ=13.59;MQ0=98;MQRankSum=-0.58;QD=1.62;ReadPosRankSum=0.631;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502249    GT:AD:DP:GQ:PL    0/1:120,56:176:99:315,0,518
4    119427957    rs28580297    C    G    185.50    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.663;DB;DP=32;Dels=0.0;FS=13.202;HRun=1;HaplotypeScore=0.9578;MQ=50.23;MQ0=2;MQRankSum=-2.051;QD=5.8;ReadPosRankSum=1.344;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000502249    GT:AD:DP:GQ:PL    0/1:20,12:32:99:215,0,627
4    119428006    .    A    G    116.77    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DP=35;Dels=0.0;FS=3.64;HRun=0;HaplotypeScore=0.9916;MQ=47.26;MQ0=3;MQRankSum=-3.851;QD=3.34;ReadPosRankSum=-1.327;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502249    GT:AD:DP:GQ:PL    0/1:24,11:35:99:147,0,811
4    119430906    rs72676176    A    T    233.15    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.292;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9889;MQ=58.11;MQ0=0;MQRankSum=0.608;QD=11.66;ReadPosRankSum=-0.532;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502249    GT:AD:DP:GQ:PL    0/1:9,11:20:99:263,0,293
4    119434578    rs2728425    G    A    54.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.35;MQ0=1;MQRankSum=-0.573;QD=5.41;ReadPosRankSum=-0.248;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502249    GT:AD:DP:GQ:PL    0/1:6,4:10:84.11:84,0,192
4    119435061    rs147652632    C    T    295.69    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=129;Dels=0.0;FS=6.34;HRun=2;HaplotypeScore=0.8941;MQ=48.39;MQ0=1;MQRankSum=-5.738;QD=2.29;ReadPosRankSum=-1.668;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502249    GT:AD:DP:GQ:PL    0/1:104,25:129:99:326,0,3358
4    119435862    .    A    G    265.01    MQFilter40    AC=2;AF=1.00;AN=2;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.36;MQ0=38;QD=4.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450306    GT:AD:DP:GQ:PL    1/1:0,64:64:33:298,33,0
4    119435997    .    C    T    116.36    MQFilter40;QDFilter2    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DP=117;Dels=0.0;FS=7.282;HRun=1;HaplotypeScore=0.0;MQ=11.06;MQ0=87;MQRankSum=-0.775;QD=0.99;ReadPosRankSum=1.851;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450306    GT:AD:DP:GQ:PL    0/1:76,41:117:99:146,0,335
4    119436130    rs72551018    G    A    331.52    MQFilter40    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=3.241;DB;DP=74;Dels=0.0;FS=1.022;HRun=0;HaplotypeScore=0.9665;MQ=37.71;MQ0=5;MQRankSum=-4.649;QD=4.42;ReadPosRankSum=-1.232;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450306    GT:AD:DP:GQ:PL    0/1:48,26:74:99:362,0,1299
4    119444456    rs28720014    G    A    1007.20    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=4.897;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=48.19;MQ0=0;MQRankSum=2.739;QD=15.03;ReadPosRankSum=0.685;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412784    GT:AD:DP:GQ:PL    0/1:30,37:67:99:1037,0,770
4    119465612    rs149328984    T    A    251.54    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.28;MQ0=15;MQRankSum=-1.092;QD=5.99;ReadPosRankSum=1.626;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=CEP170P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412784    GT:AD:DP:GQ:PL    0/1:24,18:42:99:282,0,319
4    119517066    rs4001379    G    A    49.25    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.69;MQ0=2;MQRankSum=-1.652;QD=4.1;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,7:12:79.24:79,0,130
4    119557567    rs298979    A    C    822.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.81;MQ0=0;QD=30.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CICP16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502609    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:855,66,0
4    119557628    rs298978    A    T    172.92    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.88;MQ0=0;MQRankSum=0.231;QD=12.35;ReadPosRankSum=0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CICP16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502609    GT:AD:DP:GQ:PL    0/1:5,9:14:99:203,0,100
4    119609039    rs9968326    G    A    465.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388822    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:498,36,0
4    119613045    rs6821350    T    G    232.71    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.88;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.739;QD=11.08;ReadPosRankSum=0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508801    GT:AD:DP:GQ:PL    0/1:11,10:21:99:263,0,387
4    119615543    rs13111664    T    C    524.39    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.207;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=-0.09;QD=15.89;ReadPosRankSum=-0.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508801    GT:AD:DP:GQ:PL    0/1:16,17:33:99:554,0,551
4    119625000    rs3733517    A    G    319.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=21.32;ReadPosRankSum=1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388822    GT:AD:DP:GQ:PL    0/1:5,10:15:99:350,0,161
4    119625273    rs298995    G    A    209.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.091;DB;DP=18;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.906;QD=11.61;ReadPosRankSum=-0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502564    GT:AD:DP:GQ:PL    0/1:11,7:18:99:239,0,359
4    119653822    rs2046779    G    C    65.52    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=2.507;DB;DP=22;Dels=0.0;FS=3.859;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.332;QD=2.98;ReadPosRankSum=-0.078;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419654    GT:AD:DP:GQ:PL    0/1:17,5:22:95.52:96,0,514
4    119659284    rs7653962    T    A    97.36    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9958;MQ=58.05;MQ0=0;MQRankSum=0.678;QD=8.11;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280551    GT:AD:DP:GQ:PL    0/1:7,5:12:99:127,0,244
4    119674051    rs71595318    G    GA    81.98    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.833;DB;DP=30;FS=2.09;HRun=10;HaplotypeScore=111.5109;IndelType=I;MQ=58.61;MQ0=0;MQRankSum=-0.233;QD=2.73;ReadPosRankSum=-0.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280551    GT:AD:DP:GQ:PL    0/1:23,6:30:99:121,0,353
4    119736598    rs6843524    C    T    831.32    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=3.509;DB;DP=76;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.419;QD=10.94;ReadPosRankSum=-0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503683    GT:AD:DP:GQ:PL    0/1:47,29:76:99:861,0,1259
4    119944566    .    C    CT    428.90    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.245;DP=25;FS=9.048;HRun=7;HaplotypeScore=89.435;IndelType=I;MQ=60.43;MQ0=0;MQRankSum=0.194;QD=17.16;ReadPosRankSum=1.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    0/1:10,15:25:99:468,0,214
4    119944611    rs1459058    G    T    334.12    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.382;DB;DP=35;Dels=0.0;FS=1.545;HRun=1;HaplotypeScore=0.0;MQ=60.31;MQ0=0;MQRankSum=-1.124;QD=9.55;ReadPosRankSum=1.75;SNPEFF_AMINO_ACID_CHANGE=G44;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_119944585_119944736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    0/1:21,13:35:99:364,0,693
4    119944900    rs74565701    A    G    119.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    0/1:2,4:6:63.82:149,0,64
4    119947961    rs111228039    AAAG    A    729.41    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=4.148;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=183.9815;IndelType=D;MQ=57.16;MQ0=0;MQRankSum=-0.896;QD=17.37;ReadPosRankSum=0.653;SNPEFF_AMINO_ACID_CHANGE=QR146Q;SNPEFF_CODON_CHANGE=caaaga/caa;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_4_119947782_119948593;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    0/1:23,19:42:99:768,0,1181
4    119950975    rs111780874    A    AT    2419.59    PASS    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.441;DB;DP=161;FS=0.0;HRun=13;HaplotypeScore=644.207;IndelType=I;MQ=58.9;MQ0=0;MQRankSum=0.843;QD=15.03;ReadPosRankSum=-0.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    0/1:50,101:161:28.47:2459,0,28
4    119951647    rs7698598    A    G    2338.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5774;MQ=59.3;MQ0=0;QD=35.44;SNPEFF_AMINO_ACID_CHANGE=T573A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_119951000_119953182;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2372,184,0
4    119952955    rs61732241    C    T    332.27    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=29;Dels=0.0;FS=3.382;HRun=0;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;MQRankSum=-0.534;QD=11.46;ReadPosRankSum=-1.37;SNPEFF_AMINO_ACID_CHANGE=R1009W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_119951000_119953182;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    0/1:16,13:29:99:362,0,518
4    119979128    rs138901215    TA    T    299.57    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=3.788;DB;DP=26;FS=0.0;HRun=8;HaplotypeScore=64.1074;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=-1.399;QD=11.52;ReadPosRankSum=0.034;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    0/1:12,14:26:99:339,0,224
4    119979243    rs62328678    G    A    92.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=15.35;ReadPosRankSum=-0.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNPO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307142    GT:AD:DP:GQ:PL    0/1:2,4:6:29.74:122,0,30
4    120071926    rs6853794    T    C    711.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307128    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:745,54,0
4    120072233    rs6828875    G    C    165.22    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.368;DB;DP=25;Dels=0.0;FS=9.348;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-1.217;QD=6.61;ReadPosRankSum=-0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307128    GT:AD:DP:GQ:PL    0/1:16,9:25:99:195,0,558
4    120072238    rs6828349    A    G    171.74    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=25;Dels=0.0;FS=5.653;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.908;QD=6.87;ReadPosRankSum=-1.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307128    GT:AD:DP:GQ:PL    0/1:14,11:25:99:202,0,476
4    120072275    rs6829055    G    C    312.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.701;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.247;QD=15.62;ReadPosRankSum=1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307128    GT:AD:DP:GQ:PL    0/1:10,10:20:99:342,0,313
4    120072317    rs34497965    AT    A    139.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=89.1951;IndelType=D;MQ=58.05;MQ0=0;MQRankSum=-0.48;QD=11.6;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307128    GT:AD:DP:GQ:PL    0/1:4,8:12:36.38:178,0,36
4    120079159    rs11721566    A    G    988.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.276;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.296;QD=15.44;ReadPosRankSum=-0.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307128    GT:AD:DP:GQ:PL    0/1:32,32:64:99:1018,0,1038
4    120079387    rs11729978    G    A    417.36    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.434;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.329;QD=10.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307128    GT:AD:DP:GQ:PL    0/1:23,15:38:99:447,0,858
4    120107098    rs112369914    G    GT    496.99    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.482;DB;DP=37;FS=3.003;HRun=10;HaplotypeScore=86.6273;IndelType=I;MQ=60.87;MQ0=0;MQRankSum=0.892;QD=13.43;ReadPosRankSum=-1.907;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307128    GT:AD:DP:GQ:PL    0/1:17,20:37:99:536,0,243
4    120133221    rs7441137    G    T    77.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.46;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-455G16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326780    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:108,0,30
4    120133712    rs6851130    G    A    71.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.28;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-455G16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515843    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,140
4    120180790    rs6823331    T    C    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=USP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274030    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,71
4    120194718    rs35610634    G    GT    529.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.369;DB;DP=20;FS=0.0;HRun=9;HaplotypeScore=60.9362;IndelType=I;MQ=57.41;MQ0=0;MQRankSum=1.004;QD=26.45;ReadPosRankSum=-0.274;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=USP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507906    GT:AD:DP:GQ:PL    1/1:1,19:20:31.09:571,31,0
4    120212425    rs34076547    AT    A    233.55    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=4.215;DB;DP=28;FS=2.269;HRun=8;HaplotypeScore=66.3358;IndelType=D;MQ=58.21;MQ0=0;MQRankSum=-0.571;QD=8.34;ReadPosRankSum=-0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=USP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274030    GT:AD:DP:GQ:PL    0/1:16,12:28:99:273,0,396
4    120212514    rs11731675    T    C    34.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.84;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=USP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274030    GT:AD:DP:GQ:PL    0/1:3,2:5:64.17:64,0,108
4    120214030    rs3749591    T    G    888.99    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.297;DB;DP=60;Dels=0.0;FS=7.092;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.808;QD=14.82;ReadPosRankSum=0.674;SNPEFF_AMINO_ACID_CHANGE=S962R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_120213493_120215812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=USP53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274030    GT:AD:DP:GQ:PL    0/1:28,32:60:99:919,0,823
4    120240594    .    TAGTC    T    699.53    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DP=35;FS=0.0;HRun=0;HaplotypeScore=169.7601;IndelType=D;MQ=56.25;MQ0=0;MQRankSum=-2.404;QD=19.99;ReadPosRankSum=0.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274024    GT:AD:DP:GQ:PL    0/1:20,15:35:99:739,0,1349
4    120463856    rs2622497    A    C    624.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264805    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:658,51,0
4    120517491    rs2389869    C    T    71.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420633    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
4    120528327    rs3733526    G    A    1387    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.168;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.249;QD=32.26;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=A41V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_120527864_120528452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394439    GT:AD:DP:GQ:PL    1/1:1,42:43:78.23:1420,78,0
4    120528524    rs10536068    ATCT    A    357.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=34.1944;IndelType=D;MQ=57.05;MQ0=0;QD=44.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264805    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:400,24,0
4    120981214    rs2908990    T    C    526.29    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.682;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6828;MQ=59.33;MQ0=0;MQRankSum=-0.642;QD=12.53;ReadPosRankSum=0.466;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512484    GT:AD:DP:GQ:PL    0/1:22,20:42:99:556,0,740
4    120982045    rs61752609    T    C    291.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.487;DB;DP=32;Dels=0.0;FS=3.583;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.72;QD=9.12;ReadPosRankSum=-2.044;SNPEFF_AMINO_ACID_CHANGE=P143;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_120982029_120982132;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAD2L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296509    GT:AD:DP:GQ:PL    0/1:20,12:32:99:322,0,667
4    120982135    rs61752610    G    T    182.46    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=25;Dels=0.0;FS=17.042;HRun=1;HaplotypeScore=0.7887;MQ=58.13;MQ0=0;MQRankSum=-1.786;QD=7.3;ReadPosRankSum=-1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511295    GT:AD:DP:GQ:PL    0/1:14,11:25:99:212,0,464
4    120983086    rs75370084    GA    G    332.55    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.297;DB;DP=22;FS=2.057;HRun=8;HaplotypeScore=63.5871;IndelType=D;MQ=59.65;MQ0=0;MQRankSum=-0.895;QD=15.12;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511295    GT:AD:DP:GQ:PL    0/1:7,15:22:99:372,0,154
4    120983259    rs2908989    T    C    553.04    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.149;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.81;MQ0=0;MQRankSum=2.262;QD=14.18;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511295    GT:AD:DP:GQ:PL    0/1:20,19:39:99:583,0,563
4    121719759    rs3789140    T    C    71.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264808    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
4    121737767    rs2136998    G    A    1296.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507611    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1330,99,0
4    121774515    rs3115310    T    C    3825    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.4421;MQ=59.72;MQ0=0;MQRankSum=-0.93;QD=15.3;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264808    GT:AD:DP:GQ:PL    0/1:117,133:250:99:3825,0,3671
4    121828519    rs1901135    C    T    375.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8455;MQ=55.52;MQ0=0;QD=23.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264808    GT:AD:DP:GQ:PL    1/1:0,16:16:33.10:408,33,0
4    121957734    rs1397645    T    C    3399.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.78;MQ0=0;QD=32.38;SNPEFF_AMINO_ACID_CHANGE=S464;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_121956768_121958812;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDNF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379692    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3399,259,0
4    121958091    rs3733558    T    G    1946    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_AMINO_ACID_CHANGE=L345;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_121956768_121958812;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDNF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379692    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1979,150,0
4    121958187    rs3822230    A    G    1907.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=D313;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_121956768_121958812;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDNF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379692    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1940,150,0
4    121958697    rs3733560    G    A    2092.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=36.08;SNPEFF_AMINO_ACID_CHANGE=S143;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_121956768_121958812;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDNF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379692    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2125,154,0
4    121961295    rs78690484    A    AT    496.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.349;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=49.0043;IndelType=I;MQ=57.77;MQ0=0;MQRankSum=1.542;QD=23.63;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379692    GT:AD:DP:GQ:PL    1/1:4,17:21:28.13:538,28,0
4    121966807    rs2276959    C    T    1458.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=K62;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_121966805_121966993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDNF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379692    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1491,111,0
4    122063735    rs3817171    G    A    269.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=14.97;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000057513    GT:AD:DP:GQ:PL    0/1:8,10:18:99:299,0,273
4    122078516    rs6835790    G    C    600.96    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.934;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=14.66;ReadPosRankSum=-1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000057513    GT:AD:DP:GQ:PL    0/1:21,20:41:99:631,0,747
4    122253894    rs78703124    G    T    131.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=13.11;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QRFPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334383    GT:AD:DP:GQ:PL    0/1:5,5:10:99:161,0,168
4    122254014    rs55975435    A    G    577.73    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.127;DB;DP=39;Dels=0.0;FS=1.261;HRun=1;HaplotypeScore=1.6598;MQ=59.04;MQ0=0;MQRankSum=0.352;QD=14.81;ReadPosRankSum=-0.042;SNPEFF_AMINO_ACID_CHANGE=L253;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_122253976_122254211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QRFPR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394427    GT:AD:DP:GQ:PL    0/1:18,21:39:99:608,0,547
4    122254284    rs55776058    T    G    226.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.313;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=14.17;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QRFPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334383    GT:AD:DP:GQ:PL    0/1:8,8:16:99:257,0,261
4    122257942    rs4558890    A    C    7921.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=222;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8267;MQ=59.79;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QRFPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512235    GT:AD:DP:GQ:PL    1/1:0,222:222:99:7922,584,0
4    122258063    rs4490481    A    G    2363.81    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=150;DS;Dels=0.0;FS=4.04;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.688;QD=15.76;ReadPosRankSum=1.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QRFPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512235    GT:AD:DP:GQ:PL    0/1:72,77:150:99:2394,0,2480
4    122258149    rs2302308    T    G    470.30    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8499;MQ=59.42;MQ0=0;MQRankSum=-0.042;QD=11.76;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QRFPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512235    GT:AD:DP:GQ:PL    0/1:21,19:40:99:500,0,723
4    122261874    rs13104309    G    A    54.87    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=6.86;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QRFPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334383    GT:AD:DP:GQ:PL    0/1:5,3:8:84.87:85,0,182
4    122591353    rs2306421    T    C    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511552    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
4    122599447    rs13109053    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509016    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
4    122609158    rs35317464    C    T    74.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296511    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:107,9,0
4    122681373    rs4342205    T    C    813.73    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.236;DB;DP=48;Dels=0.0;FS=2.729;HRun=1;HaplotypeScore=1.9402;MQ=60.0;MQ0=0;MQRankSum=-0.326;QD=16.95;ReadPosRankSum=-0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505198    GT:AD:DP:GQ:PL    0/1:20,28:48:99:844,0,504
4    122683007    rs4370153    G    A    330.50    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=9.44;ReadPosRankSum=-0.425;SNPEFF_AMINO_ACID_CHANGE=A11V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_122682985_122683047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM155;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337677    GT:AD:DP:GQ:PL    0/1:21,13:34:99:360,0,643
4    122722693    rs3811742    C    G    715.19    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.762;DB;DP=44;Dels=0.0;FS=2.227;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.25;ReadPosRankSum=2.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243498    GT:AD:DP:GQ:PL    0/1:21,23:44:99:745,0,645
4    122726029    rs72680748    A    G    202.86    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.067;QD=22.54;ReadPosRankSum=1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243498    GT:AD:DP:GQ:PL    0/1:2,7:9:54.21:233,0,54
4    122728965    rs9998785    A    T    118.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243498    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
4    122732899    rs4295291    A    G    67.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.51;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274026    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:98,0,68
4    122735225    rs141260260    C    CTTA    720.29    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.023;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=113.2222;IndelType=I;MQ=57.95;MQ0=0;MQRankSum=0.941;QD=22.51;ReadPosRankSum=0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274026    GT:AD:DP:GQ:PL    0/1:19,13:32:99:759,0,774
4    122739183    rs3217772    C    G    492.78    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=33;Dels=0.0;FS=5.871;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.135;QD=14.93;ReadPosRankSum=-0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243498    GT:AD:DP:GQ:PL    0/1:17,16:33:99:523,0,539
4    122742217    rs769242    T    C    2383    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=I163V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_122742134_122742246;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274026    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2416,175,0
4    122749436    rs2706793    G    T    660.05    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DB;DP=47;Dels=0.0;FS=2.512;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.23;QD=14.04;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264499    GT:AD:DP:GQ:PL    0/1:26,21:47:99:690,0,751
4    122760968    rs12510839    G    A    30.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.32;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264499    GT:AD:DP:GQ:PL    0/1:5,2:7:60.22:60,0,181
4    122776067    rs4833236    A    G    207.70    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=23.08;ReadPosRankSum=-1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505692    GT:AD:DP:GQ:PL    0/1:2,7:9:56.91:238,0,57
4    122776933    rs9999982    G    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505692    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,72
4    122791601    rs2271176    G    C    80.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.04;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502444    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:110,0,69
4    122824052    rs11732666    C    T    644.14    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=51;Dels=0.0;FS=5.783;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.63;ReadPosRankSum=-0.35;SNPEFF_AMINO_ACID_CHANGE=R678;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_122824007_122824216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513531    GT:AD:DP:GQ:PL    0/1:27,24:51:99:674,0,780
4    122825364    rs3762839    A    C    145.06    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.749;QD=13.19;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264811    GT:AD:DP:GQ:PL    0/1:6,5:11:99:175,0,202
4    122828794    rs951974    T    G    289.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DB;DP=15;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=19.31;ReadPosRankSum=-1.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264811    GT:AD:DP:GQ:PL    0/1:6,9:15:99:320,0,188
4    122831281    rs1507993    C    T    274.46    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.931;DB;DP=25;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=10.98;ReadPosRankSum=-1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264811    GT:AD:DP:GQ:PL    0/1:13,12:25:99:304,0,432
4    122833314    rs906496    C    T    69.22    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264811    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:99,0,27
4    122846028    rs61545746    C    A    162.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.663;QD=11.59;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264811    GT:AD:DP:GQ:PL    0/1:7,7:14:99:192,0,254
4    122872719    rs1396082    G    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_AMINO_ACID_CHANGE=G39;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_122872621_122872909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379645    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:72,0,63
4    123108762    rs7670081    G    A    772.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:805,60,0
4    123113428    rs74643640    A    G    535.63    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.285;DB;DP=36;Dels=0.0;FS=6.276;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=14.88;ReadPosRankSum=0.349;SNPEFF_AMINO_ACID_CHANGE=S316G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123113384_123113534;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    0/1:17,19:36:99:566,0,520
4    123122146    rs77249793    CTAACA    C    777.78    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=4.635;DB;DP=31;FS=4.228;HRun=0;HaplotypeScore=163.744;IndelType=D;MQ=56.91;MQ0=0;MQRankSum=-1.517;QD=25.09;ReadPosRankSum=-0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    0/1:17,14:31:99:817,0,1439
4    123140739    rs6534345    G    C    1416.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1449,108,0
4    123150088    rs77266178    A    G    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482114    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,148
4    123185682    rs7664976    C    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
4    123203098    rs45539942    C    T    74.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.38;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    0/1:2,4:6:65.50:104,0,65
4    123222417    rs35470132    TA    T    75.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=33.0723;IndelType=D;MQ=59.35;MQ0=0;MQRankSum=-0.466;QD=6.27;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    0/1:6,6:12:99:114,0,127
4    123229132    rs7688384    C    T    2078.21    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.669;DB;DP=154;Dels=0.0;FS=5.067;HRun=0;HaplotypeScore=0.8667;MQ=59.61;MQ0=0;MQRankSum=2.452;QD=13.49;ReadPosRankSum=0.035;SNPEFF_AMINO_ACID_CHANGE=A3290;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123229104_123229315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    0/1:83,70:154:99:2108,0,2284
4    123264485    rs7699742    T    C    184.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=20.55;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    0/1:3,6:9:94.37:215,0,94
4    123268859    rs2306369    A    G    413.13    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=2.802;DB;DP=47;Dels=0.0;FS=1.232;HRun=3;HaplotypeScore=1.6483;MQ=57.5;MQ0=0;MQRankSum=-0.081;QD=8.79;ReadPosRankSum=1.096;SNPEFF_AMINO_ACID_CHANGE=T1021A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123268677_123268934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438707    GT:AD:DP:GQ:PL    0/1:31,16:47:99:443,0,923
4    123283163    rs33976078    AAT    A    712.64    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=4.864;DB;DP=46;FS=4.326;HRun=0;HaplotypeScore=150.1948;IndelType=D;MQ=60.04;MQ0=0;MQRankSum=-0.632;QD=15.49;ReadPosRankSum=1.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264501    GT:AD:DP:GQ:PL    0/1:26,20:46:99:752,0,1367
4    123336918    rs1904522    G    A    34.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.86;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296513    GT:AD:DP:GQ:PL    0/1:3,2:5:64.28:64,0,97
4    123377482    rs2069763    C    A    660.57    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.905;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.411;QD=17.85;ReadPosRankSum=-0.076;SNPEFF_AMINO_ACID_CHANGE=L38;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123377449_123377880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226730    GT:AD:DP:GQ:PL    0/1:17,20:37:99:691,0,592
4    123536963    rs4833837    G    A    1805.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=C78;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123536837_123536992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264497    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1838,141,0
4    123662997    rs309368    A    T    264.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.06;MQ0=0;MQRankSum=-0.857;QD=13.22;ReadPosRankSum=1.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314218    GT:AD:DP:GQ:PL    0/1:10,10:20:99:294,0,361
4    123664204    rs309370    G    A    431.87    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.267;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.724;QD=11.36;ReadPosRankSum=1.789;SNPEFF_AMINO_ACID_CHANGE=R386Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123663038_123666098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314218    GT:AD:DP:GQ:PL    0/1:22,16:38:99:462,0,653
4    123664427    rs13135766    G    C    513.75    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.834;DB;DP=56;Dels=0.0;FS=10.511;HRun=0;HaplotypeScore=0.9159;MQ=59.17;MQ0=0;MQRankSum=0.408;QD=9.17;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=V460;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123663038_123666098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314218    GT:AD:DP:GQ:PL    0/1:34,22:56:99:544,0,1113
4    123664446    rs13135778    G    A    570.49    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=2.357;DB;DP=53;Dels=0.0;FS=8.31;HRun=1;HaplotypeScore=0.734;MQ=59.13;MQ0=0;MQRankSum=0.615;QD=10.76;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=D467N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123663038_123666098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314218    GT:AD:DP:GQ:PL    0/1:30,23:53:99:600,0,858
4    123664457    rs13135445    C    T    555.49    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.262;DB;DP=54;Dels=0.0;FS=7.905;HRun=0;HaplotypeScore=1.399;MQ=59.57;MQ0=0;MQRankSum=-2.063;QD=10.29;ReadPosRankSum=0.131;SNPEFF_AMINO_ACID_CHANGE=C470;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123663038_123666098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314218    GT:AD:DP:GQ:PL    0/1:30,24:54:99:585,0,793
4    123664919    rs13102440    A    G    608.25    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.61;DB;DP=37;Dels=0.0;FS=17.294;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.545;QD=16.44;ReadPosRankSum=-0.706;SNPEFF_AMINO_ACID_CHANGE=Q624;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123663038_123666098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314218    GT:AD:DP:GQ:PL    0/1:16,21:37:99:638,0,506
4    123748616    rs2922979    C    G    143.80    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=20.54;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264498    GT:AD:DP:GQ:PL    0/1:2,5:7:61.34:174,0,61
4    123833516    rs11098677    G    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUDT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304430    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    123838758    rs12648093    A    G    1821.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=C114R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123838656_123838859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUDT6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304430    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1855,144,0
4    123843716    rs13134412    T    C    526.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_AMINO_ACID_CHANGE=P4;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_123843490_123843761;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NUDT6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304430    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:559,45,0
4    123854495    rs1563706    T    C    342.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274008    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:376,27,0
4    123949556    rs1472949    G    A    1456.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274008    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1489,114,0
4    124322633    rs300573    C    A    823.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=17.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515726    GT:AD:DP:GQ:PL    1/1:1,45:46:90.10:857,90,0
4    124323738    rs300574    T    C    1241.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505319    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1275,96,0
4    126240510    rs2940779    T    C    553.95    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.95;DB;DP=58;Dels=0.0;FS=4.336;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=1.867;QD=9.55;ReadPosRankSum=-2.061;SNPEFF_AMINO_ACID_CHANGE=L982;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126237554_126242741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394329    GT:AD:DP:GQ:PL    0/1:33,24:58:99:584,0,1229
4    126241871    rs2710555    C    T    912.46    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.464;DB;DP=69;Dels=0.0;FS=4.738;HRun=1;HaplotypeScore=2.966;MQ=59.39;MQ0=0;MQRankSum=0.247;QD=13.22;ReadPosRankSum=-1.803;SNPEFF_AMINO_ACID_CHANGE=I1435;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126237554_126242741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394329    GT:AD:DP:GQ:PL    0/1:38,31:69:99:942,0,1195
4    126315034    rs925243    T    C    2284.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394329    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2318,181,0
4    126315282    rs925242    A    G    547.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:580,42,0
4    126319751    rs1509295    G    A    254.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
4    126328453    rs4508902    G    A    295.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:329,24,0
4    126329526    rs10518464    C    G    490.55    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.635;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.686;QD=15.82;ReadPosRankSum=-0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:14,17:31:99:521,0,502
4    126329789    rs958415    T    C    2553.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_AMINO_ACID_CHANGE=D1920;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126329599_126329949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394329    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2587,199,0
4    126335978    rs4605670    G    C    1361.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1394,102,0
4    126336703    rs17009618    T    C    1023.26    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.22;DB;DP=93;Dels=0.0;FS=11.015;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;MQRankSum=0.103;QD=11.0;ReadPosRankSum=-0.963;SNPEFF_AMINO_ACID_CHANGE=N2195;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126336039_126336961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394329    GT:AD:DP:GQ:PL    0/1:53,40:93:99:1053,0,1570
4    126336990    rs10010000    G    T    560.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:593,45,0
4    126337555    rs7675556    A    G    2109.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2142,163,0
4    126355609    rs7656135    T    G    1284.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.7718;MQ=58.13;MQ0=0;MQRankSum=-1.251;QD=35.69;ReadPosRankSum=-1.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:1,35:36:99:1318,99,0
4    126369461    rs4834041    C    T    349.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:383,30,0
4    126369872    rs988863    G    C    1113.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_AMINO_ACID_CHANGE=V2567;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126369616_126373965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394329    GT:AD:DP:GQ:PL    1/1:0,35:35:84.26:1147,84,0
4    126373789    rs12650153    G    A    946.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.44;SNPEFF_AMINO_ACID_CHANGE=S2171N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126369616_126373965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:980,72,0
4    126384595    rs4146009    C    T    133.91    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=9.57;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:9,5:14:99:164,0,330
4    126384905    rs10010645    A    C    642.96    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8401;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=14.29;ReadPosRankSum=0.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:21,24:45:99:673,0,708
4    126389627    rs6814158    A    G    971.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;QD=29.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,33:33:81.25:1004,81,0
4    126390010    rs35304021    A    G    494.35    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=33;Dels=0.0;FS=4.746;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.594;QD=14.98;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:17,16:33:99:524,0,592
4    126390022    rs34927272    A    G    294.50    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.636;DB;DP=23;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=12.8;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:13,10:23:99:324,0,465
4    126390102    rs34321538    A    G    243.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:276,21,0
4    126397321    rs17009761    C    T    655.94    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.258;DB;DP=54;Dels=0.0;FS=2.577;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.94;QD=12.15;ReadPosRankSum=0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:31,23:54:99:686,0,892
4    126398134    rs10518467    G    A    111.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=13.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:4,4:8:99:141,0,110
4    126400825    rs1506361    G    T    1814    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1847,141,0
4    126402574    rs10026056    C    T    31.18    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.45;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:5,2:7:61.17:61,0,185
4    126402921    rs11098815    T    G    314.38    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DB;DP=24;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=3.5657;MQ=58.96;MQ0=0;MQRankSum=-0.155;QD=13.1;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:11,13:24:99:344,0,314
4    126408586    rs17009825    C    T    1401.67    PASS    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=1.419;DB;DP=62;Dels=0.0;FS=6.257;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.869;QD=22.61;ReadPosRankSum=-0.489;SNPEFF_AMINO_ACID_CHANGE=D2542;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126408500_126408761;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:18,44:62:99:1432,0,454
4    126411002    rs60144993    C    CTTTT    1811.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.953;DB;DP=59;FS=0.0;HRun=21;HaplotypeScore=667.7857;IndelType=I;MQ=35.1;MQ0=0;MQRankSum=-0.347;QD=30.71;ReadPosRankSum=0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:32,12:59:99:1854,116,0
4    126411576    rs75469760    G    A    1022.66    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.563;DB;DP=83;Dels=0.0;FS=0.905;HRun=2;HaplotypeScore=0.8941;MQ=59.44;MQ0=0;MQRankSum=-0.888;QD=12.32;ReadPosRankSum=-1.651;SNPEFF_AMINO_ACID_CHANGE=K2774;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126411056_126412923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1053,0,1467
4    126412106    rs147662558    C    G    1900.89    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.855;DB;DP=113;Dels=0.0;FS=0.709;HRun=0;HaplotypeScore=0.9332;MQ=59.84;MQ0=0;MQRankSum=-0.896;QD=16.82;ReadPosRankSum=1.386;SNPEFF_AMINO_ACID_CHANGE=S2951C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126411056_126412923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:52,61:113:99:1931,0,1360
4    126412154    rs72675395    G    A    1097.74    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.432;DB;DP=91;Dels=0.0;FS=2.802;HRun=2;HaplotypeScore=1.984;MQ=59.54;MQ0=0;MQRankSum=0.227;QD=12.06;ReadPosRankSum=0.467;SNPEFF_AMINO_ACID_CHANGE=R2967K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126411056_126412923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    0/1:50,41:91:99:1128,0,1586
4    126412575    rs1014866    A    G    1224.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=R3107;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_126411056_126412923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335110    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1258,96,0
4    128554404    rs2255457    G    A    430.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296461    GT:AD:DP:GQ:PL    1/1:0,15:16:39.12:463,39,0
4    128565000    rs3749507    A    G    2178.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.22;MQ0=0;QD=36.92;SNPEFF_AMINO_ACID_CHANGE=R138;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_128564676_128565191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTU;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504491    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2211,163,0
4    128584580    rs4833380    G    A    1568.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=T271;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_128584536_128584739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTU;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296461    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1602,114,0
4    128620916    rs4259075    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335251    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    128621272    rs12331481    A    C    1790.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2657;MQ=56.88;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335251    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1824,141,0
4    128627050    rs7683627    C    T    502.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506283    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:535,39,0
4    128632445    rs4834211    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512995    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
4    128635022    rs34240473    C    T    654.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335251    GT:AD:DP:GQ:PL    1/1:0,18:18:54.13:688,54,0
4    128665981    rs769293    T    C    956.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281154    GT:AD:DP:GQ:PL    1/1:0,29:29:84.23:990,84,0
4    128689936    rs2305958    A    G    1391.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=31.62;SNPEFF_AMINO_ACID_CHANGE=P221;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_128689907_128690032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281154    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1424,111,0
4    128723042    rs1380154    T    C    1396.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_AMINO_ACID_CHANGE=L170S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_128722940_128723073;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA4L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508549    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1430,114,0
4    128803159    rs3811741    G    A    331.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270861    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
4    128807219    rs3811740    T    A    2754.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=S191T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_128806863_128807883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000514379    GT:AD:DP:GQ:PL    1/1:0,79:80:99:2787,211,0
4    128810955    rs80227164    C    T    240.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.473;DB;DP=16;Dels=0.0;FS=6.32;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.628;QD=15.05;ReadPosRankSum=-0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270861    GT:AD:DP:GQ:PL    0/1:8,8:16:99:271,0,274
4    128814964    rs17012739    G    T    4159.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.81;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=E752D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_128814889_128815036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000515069    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4160,313,0
4    128923001    rs35200534    GT    G    1185.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=11;HaplotypeScore=184.8016;IndelType=D;MQ=61.13;MQ0=0;QD=21.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388795    GT:AD:DP:GQ:PL    1/1:7,48:56:99:1228,152,0
4    128995989    rs6534661    A    G    367.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264584    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:401,30,0
4    129012181    rs2306054    G    A    1361.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=R128;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_129012156_129012299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326639    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1395,102,0
4    129012638    rs1064205    A    G    1723.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_AMINO_ACID_CHANGE=A166;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_129012502_129012667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264584    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1756,135,0
4    129035514    rs2306055    C    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264584    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
4    129043204    rs12508837    C    G    2566.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4814;MQ=55.31;MQ0=0;QD=32.09;SNPEFF_AMINO_ACID_CHANGE=P415R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_129042981_129043343;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264584    GT:AD:DP:GQ:PL    1/1:1,78:80:99:2600,199,0
4    129043286    rs3733320    C    T    2522.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.94;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=Y442;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_129042981_129043343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264584    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2556,187,0
4    129100643    rs12645577    G    A    3009.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.73;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=R601H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_129100561_129100667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264584    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3042,220,0
4    129770068    rs11098988    C    T    860.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226319    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:894,72,0
4    129793559    rs11933240    A    G    194.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512960    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:227,18,0
4    129805716    rs167618    G    A    882.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281142    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:915,66,0
4    129867280    rs10028124    T    A    1121.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.32;MQ0=0;MQRankSum=-0.612;QD=32.99;ReadPosRankSum=0.612;SNPEFF_AMINO_ACID_CHANGE=S441C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_129867162_129867307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCLT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281142    GT:AD:DP:GQ:PL    1/1:1,33:34:57.17:1155,57,0
4    129913243    rs35350849    G    T    229.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.739;QD=16.37;ReadPosRankSum=1.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281142    GT:AD:DP:GQ:PL    0/1:6,8:14:99:259,0,201
4    129913345    rs13151322    G    A    1538.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=30.77;SNPEFF_AMINO_ACID_CHANGE=I198;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_129913322_129913392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCLT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503215    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1572,114,0
4    129920969    rs13118479    A    T    1023.41    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=0.359;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.148;QD=16.24;ReadPosRankSum=-1.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281142    GT:AD:DP:GQ:PL    0/1:25,38:63:99:1053,0,767
4    130003237    rs1699388    T    C    42.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281142    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
4    130003252    rs11737495    G    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281142    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    130023759    rs1757935    A    T    1235.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=32.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502360    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1268,99,0
4    130030325    rs67874014    A    G    386.32    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.591;QD=20.33;ReadPosRankSum=-1.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508622    GT:AD:DP:GQ:PL    0/1:6,13:19:99:416,0,148
4    130030644    rs2271570    C    T    1039.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.12;SNPEFF_AMINO_ACID_CHANGE=R87C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_130030628_130030691;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508673    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1072,78,0
4    130030652    rs337277    A    G    1181.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=38.1;SNPEFF_AMINO_ACID_CHANGE=M107V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_130030628_130030827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281146    GT:AD:DP:GQ:PL    1/1:0,31:31:90.28:1214,90,0
4    130032843    rs17351999    A    G    1358.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_AMINO_ACID_CHANGE=H166R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_130032841_130034487;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281146    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1391,108,0
4    134074058    rs3749589    A    G    34.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=4.92;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264360    GT:AD:DP:GQ:PL    0/1:5,2:7:64.40:64,0,150
4    134084022    rs41279285    G    A    89.77    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=12.82;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264360    GT:AD:DP:GQ:PL    0/1:3,4:7:99:120,0,103
4    134084958    rs2420154    G    A    239.68    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=14.1;ReadPosRankSum=-0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264360    GT:AD:DP:GQ:PL    0/1:9,8:17:99:270,0,247
4    134085208    rs4461537    C    T    2016.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.346;DB;DP=132;Dels=0.0;FS=1.384;HRun=0;HaplotypeScore=0.9979;MQ=59.68;MQ0=0;MQRankSum=-0.767;QD=15.27;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394248    GT:AD:DP:GQ:PL    0/1:61,71:132:99:2046,0,1945
4    134481874    rs56303302    A    G    35.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC105252.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408710    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
4    134482149    rs903092    C    T    122.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC105252.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408710    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
4    134482163    rs903093    T    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC105252.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408710    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
4    135873547    rs62314961    G    A    129.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=15;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.648;QD=8.62;ReadPosRankSum=-0.412;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-192C21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459634    GT:AD:DP:GQ:PL    0/1:9,6:15:99:159,0,298
4    135966535    rs11391167    T    TA    278.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=9;HaplotypeScore=37.404;IndelType=I;MQ=57.9;MQ0=0;QD=23.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-553P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509116    GT:AD:DP:GQ:PL    1/1:2,10:12:30.06:320,30,0
4    135966954    rs28703919    T    C    562.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-553P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509116    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:596,48,0
4    136292722    rs4863933    A    G    1346.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC108867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385114    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1379,102,0
4    138442116    .    T    A    100.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=10.07;ReadPosRankSum=-0.851;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344876    GT:AD:DP:GQ:PL    0/1:5,5:10:99:131,0,167
4    138449510    rs58884168    T    A    259.80    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=3.37;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=11.3;ReadPosRankSum=1.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344876    GT:AD:DP:GQ:PL    0/1:14,9:23:99:290,0,500
4    138449683    rs10018837    A    G    2300.31    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.175;DB;DP=178;Dels=0.0;FS=2.679;HRun=0;HaplotypeScore=2.8319;MQ=59.87;MQ0=0;MQRankSum=-1.843;QD=12.92;ReadPosRankSum=0.758;SNPEFF_AMINO_ACID_CHANGE=L108;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_138449632_138449795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510305    GT:AD:DP:GQ:PL    0/1:95,83:178:99:2330,0,2937
4    138449812    rs10006580    C    G    1698.34    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=2.825;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8862;MQ=59.8;MQ0=0;MQRankSum=0.463;QD=14.64;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344876    GT:AD:DP:GQ:PL    0/1:62,53:116:99:1728,0,1944
4    138450124    rs62330469    G    A    216.57    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.66;ReadPosRankSum=-2.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344876    GT:AD:DP:GQ:PL    0/1:3,7:10:95.13:247,0,95
4    139100372    rs4479754    C    T    2280.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.63;SNPEFF_AMINO_ACID_CHANGE=S481;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_139100371_139100548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280612    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2313,175,0
4    139103366    rs10016559    A    G    398.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280612    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:431,33,0
4    139135799    rs11944083    T    C    616.68    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.861;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.736;QD=16.23;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280612    GT:AD:DP:GQ:PL    0/1:14,24:38:99:647,0,376
4    139140388    rs10025342    G    A    1086.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280612    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1119,84,0
4    139140494    rs6838248    G    C    512.04    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.901;DB;DP=57;Dels=0.0;FS=2.498;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.329;QD=8.98;ReadPosRankSum=-0.025;SNPEFF_AMINO_ACID_CHANGE=A224;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_139140420_139140519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280612    GT:AD:DP:GQ:PL    0/1:37,20:57:99:542,0,999
4    139153317    rs6823642    T    A    190.08    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.181;QD=9.05;ReadPosRankSum=-1.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280612    GT:AD:DP:GQ:PL    0/1:13,8:21:99:220,0,464
4    139482703    rs11730882    G    A    255.29    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.429;DB;DP=19;Dels=0.0;FS=7.474;HRun=1;HaplotypeScore=0.9734;MQ=58.78;MQ0=0;MQRankSum=-0.939;QD=13.44;ReadPosRankSum=1.266;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-173E2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502915    GT:AD:DP:GQ:PL    0/1:9,10:19:99:285,0,309
4    139482854    rs7695907    C    A    324.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=24;Dels=0.0;FS=6.569;HRun=1;HaplotypeScore=2.7752;MQ=58.24;MQ0=0;MQRankSum=-0.029;QD=13.51;ReadPosRankSum=0.953;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-173E2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502915    GT:AD:DP:GQ:PL    0/1:12,12:24:99:354,0,360
4    140005294    rs4863628    A    G    2315.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=I17;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_140005287_140005650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ELF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358635    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2349,181,0
4    140036422    rs7661947    T    C    138.59    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=46.1;MQ0=0;MQRankSum=0.299;QD=8.66;ReadPosRankSum=1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265495    GT:AD:DP:GQ:PL    0/1:7,9:16:99:169,0,229
4    140058849    rs62623564    A    T    1147.88    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.28;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=17.66;ReadPosRankSum=-0.977;SNPEFF_AMINO_ACID_CHANGE=S3T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_140058784_140059021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ELF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265495    GT:AD:DP:GQ:PL    0/1:26,38:65:99:1178,0,762
4    140187612    rs116191353    T    G    210.30    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.94;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7012;MQ=60.0;MQ0=0;MQRankSum=-1.362;QD=11.07;ReadPosRankSum=-0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503997    GT:AD:DP:GQ:PL    0/1:11,8:19:99:240,0,361
4    140216042    rs144577013    T    C    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.82;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507764    GT:AD:DP:GQ:PL    0/1:4,2:6:64.93:65,0,146
4    140270875    rs2044810    G    A    149.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296543    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:182,15,0
4    140308984    rs998310    C    A    589.64    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.516;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.25;MQ0=0;MQRankSum=0.861;QD=19.02;ReadPosRankSum=0.258;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485905    GT:AD:DP:GQ:PL    0/1:12,19:31:99:620,0,364
4    140375296    rs13128486    C    G    138.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=13.87;ReadPosRankSum=-0.361;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_140374961_140375598;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAB33B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305626    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,102
4    140450455    rs2592973    G    C    360.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SETD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404104    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:394,30,0
4    140619565    rs186266163    C    A    160.13    MQFilter40    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.59;MQ0=11;MQRankSum=-0.137;QD=3.41;ReadPosRankSum=-0.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265498    GT:AD:DP:GQ:PL    0/1:35,12:47:99:190,0,422
4    140625323    rs925424    A    G    2399.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515067    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2432,175,0
4    140651584    rs5862430    TCTG    T    188.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=43.6291;IndelType=D;MQ=54.65;MQ0=0;QD=20.92;SNPEFF_AMINO_ACID_CHANGE=Q772-;SNPEFF_CODON_CHANGE=cag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_4_140651570_140651821;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509479    GT:AD:DP:GQ:PL    1/1:3,5:9:18.03:230,18,0
4    140810334    rs3733381    T    C    4766.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8835;MQ=59.49;MQ0=0;QD=35.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398940    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4766,364,0
4    140810637    rs11100342    C    T    1084.94    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=62;Dels=0.0;FS=2.242;HRun=0;HaplotypeScore=5.6427;MQ=59.27;MQ0=0;MQRankSum=-2.044;QD=17.22;ReadPosRankSum=1.036;SNPEFF_AMINO_ACID_CHANGE=P179;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_140810463_140811065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398940    GT:AD:DP:GQ:PL    0/1:27,35:62:99:1115,0,758
4    140810700    rs11729794    C    T    1099.15    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.828;DB;DP=110;Dels=0.0;FS=3.604;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=1.929;QD=9.99;ReadPosRankSum=1.66;SNPEFF_AMINO_ACID_CHANGE=P158;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_140810463_140811065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398940    GT:AD:DP:GQ:PL    0/1:69,41:110:99:1129,0,2221
4    140811083    .    GC    G    171.84    QDFilter2    AB=0.94;AC=1;AF=0.50;AN=2;BaseQRankSum=4.91;DP=125;DS;FS=1.138;HRun=1;HaplotypeScore=1336.7093;IndelType=D;MQ=51.91;MQ0=0;MQRankSum=-3.353;QD=1.37;ReadPosRankSum=5.193;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_140810511_140812121;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000327122    GT:AD:DP:GQ:PL    0/1:117,8:125:99:211,0,1114
4    140811085    rs67877726    TGCTGCTGCTGC    T    3415.05    PASS    AB=0.939;AC=1;AF=0.50;AN=2;BaseQRankSum=5.992;DB;DP=124;DS;FS=10.369;HRun=0;HaplotypeScore=1720.3892;IndelType=D;MQ=51.63;MQ0=0;MQRankSum=-2.689;QD=27.54;ReadPosRankSum=7.747;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_140810511_140812121;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000327122    GT:AD:DP:GQ:PL    0/1:116,8:124:63.66:3415,0,64
4    140811111    rs62344937    C    T    449.82    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DB;DP=89;Dels=0.0;FS=3.395;HRun=1;HaplotypeScore=2.4663;MQ=48.26;MQ0=0;MQRankSum=1.228;QD=5.05;ReadPosRankSum=-6.522;SNPEFF_AMINO_ACID_CHANGE=Q32;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_140811099_140811206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398940    GT:AD:DP:GQ:PL    0/1:54,35:89:99:480,0,830
4    140811117    rs62344938    C    T    188.20    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=1.282;DB;DP=78;Dels=0.0;FS=6.008;HRun=1;HaplotypeScore=1.3123;MQ=46.75;MQ0=0;MQRankSum=-1.49;QD=2.41;ReadPosRankSum=-6.191;SNPEFF_AMINO_ACID_CHANGE=Q30;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_140811099_140811206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398940    GT:AD:DP:GQ:PL    0/1:55,23:78:99:218,0,957
4    140811135    rs3733382    T    C    1745.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=50.85;MQ0=0;QD=25.67;SNPEFF_AMINO_ACID_CHANGE=K24;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_140811099_140811206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398940    GT:AD:DP:GQ:PL    1/1:0,68:68:99:1779,138,0
4    140811709    rs115966590    T    C    1907.47    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.008;DB;DP=136;Dels=0.0;FS=0.647;HRun=0;HaplotypeScore=1.8268;MQ=59.69;MQ0=0;MQRankSum=1.362;QD=14.03;ReadPosRankSum=-0.788;SNPEFF_AMINO_ACID_CHANGE=N138S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_140810511_140812121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327122    GT:AD:DP:GQ:PL    0/1:67,69:136:99:1937,0,2114
4    141264871    rs16998462    A    G    189.22    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.134;QD=15.77;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCOC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338517    GT:AD:DP:GQ:PL    0/1:5,7:12:99:219,0,163
4    141311960    rs358329    T    C    115.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=7.68;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325617    GT:AD:DP:GQ:PL    0/1:9,6:15:99:145,0,330
4    141317068    rs12513290    G    A    770.03    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.245;DB;DP=53;Dels=0.0;FS=1.082;HRun=1;HaplotypeScore=1.5757;MQ=59.13;MQ0=0;MQRankSum=-0.568;QD=14.53;ReadPosRankSum=0.055;SNPEFF_AMINO_ACID_CHANGE=R269W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_141316973_141317123;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLGN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545667    GT:AD:DP:GQ:PL    0/1:26,27:53:99:800,0,692
4    141321425    rs2252427    A    G    305.60    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.78;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=11.75;ReadPosRankSum=0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509477    GT:AD:DP:GQ:PL    0/1:14,12:26:99:336,0,494
4    141372235    rs1897281    T    C    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-542P2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503109    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
4    141446510    rs3833618    C    CTAAT    1243.81    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.861;DB;DP=39;FS=4.167;HRun=0;HaplotypeScore=173.8924;IndelType=I;MQ=58.03;MQ0=0;MQRankSum=-0.168;QD=31.89;ReadPosRankSum=0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323570    GT:AD:DP:GQ:PL    0/1:22,15:39:99:1283,0,1063
4    141446767    rs3828535    G    T    150.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.68;ReadPosRankSum=1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507667    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,138
4    141458485    rs882930    T    G    45.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323570    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:76,0,32
4    141483471    rs2270565    T    A    254.94    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.676;DB;DP=33;Dels=0.0;FS=3.772;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.281;QD=7.73;ReadPosRankSum=-0.767;SNPEFF_AMINO_ACID_CHANGE=M229L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_141483347_141483527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262999    GT:AD:DP:GQ:PL    0/1:21,12:33:99:285,0,724
4    141488795    rs7688743    G    A    187.69    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=26.81;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262999    GT:AD:DP:GQ:PL    0/1:1,6:7:20.16:218,0,20
4    141489068    rs45539933    C    T    901.56    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.981;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2223;MQ=60.0;MQ0=0;MQRankSum=-0.485;QD=10.99;ReadPosRankSum=-1.068;SNPEFF_AMINO_ACID_CHANGE=A64T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_141488933_141489131;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262999    GT:AD:DP:GQ:PL    0/1:48,34:82:99:932,0,1418
4    141543997    rs1560440    G    A    1178.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=H1051;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_141541919_141544071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1211,90,0
4    141545161    rs3215071    C    CAA    1275.48    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.719;DB;DP=47;FS=2.329;HRun=1;HaplotypeScore=122.3045;IndelType=I;MQ=59.83;MQ0=0;MQRankSum=1.081;QD=27.14;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:22,25:47:99:1315,0,815
4    141545564    rs5862491    G    GA    458.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.614;DB;DP=25;FS=5.706;HRun=6;HaplotypeScore=64.2485;IndelType=I;MQ=59.0;MQ0=0;MQRankSum=1.194;QD=18.32;ReadPosRankSum=1.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:10,15:25:99:497,0,176
4    141549393    rs2291711    C    A    757.29    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=45;Dels=0.0;FS=4.201;HRun=4;HaplotypeScore=0.9578;MQ=59.49;MQ0=0;MQRankSum=0.868;QD=16.83;ReadPosRankSum=-1.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:17,28:45:99:787,0,577
4    141554949    rs10002459    G    A    139.21    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=17.4;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:3,5:8:67.71:169,0,68
4    141555062    rs6851737    G    T    1105.08    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=72;Dels=0.0;FS=1.002;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=0.273;QD=15.35;ReadPosRankSum=-0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:31,41:72:99:1135,0,828
4    141578155    rs7683748    C    T    704.58    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=51;Dels=0.0;FS=2.148;HRun=0;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=-0.085;QD=13.82;ReadPosRankSum=-1.291;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502786    GT:AD:DP:GQ:PL    0/1:26,25:51:99:735,0,918
4    141580561    rs3886094    C    T    77.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.95;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502786    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,107
4    141590043    rs111636015    G    A    317.19    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=25;Dels=0.0;FS=4.925;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=12.69;ReadPosRankSum=1.224;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514787    GT:AD:DP:GQ:PL    0/1:13,12:25:99:347,0,407
4    141592206    rs4956473    A    G    184.79    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.391;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.122;QD=10.87;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:10,7:17:99:215,0,347
4    141597913    rs1469539    A    G    30.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=3.81;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:5,3:8:60.48:60,0,191
4    141599841    rs1367362    T    C    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:2,2:4:55.93:71,0,56
4    141600320    rs4956329    A    G    1763.86    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.704;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.2884;MQ=59.46;MQ0=0;MQRankSum=-0.712;QD=10.89;ReadPosRankSum=0.73;SNPEFF_AMINO_ACID_CHANGE=L209;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_141600096_141600357;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:95,66:162:99:1794,0,3023
4    141601089    rs67706913    T    TA    432.79    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.119;DB;DP=39;FS=3.259;HRun=11;HaplotypeScore=93.1141;IndelType=I;MQ=59.55;MQ0=0;MQRankSum=0.032;QD=11.1;ReadPosRankSum=1.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:19,19:39:99:472,0,269
4    141607679    rs13112073    C    T    1489.95    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.945;DB;DP=91;Dels=0.0;FS=1.676;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.966;QD=16.37;ReadPosRankSum=-0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442267    GT:AD:DP:GQ:PL    0/1:43,48:91:99:1520,0,1397
4    141832180    rs17338203    A    G    32.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.9894;MQ=56.62;MQ0=0;MQRankSum=-0.198;QD=4.7;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506101    GT:AD:DP:GQ:PL    0/1:5,2:7:62.92:63,0,179
4    141847077    rs13138724    G    A    610.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.312;QD=22.63;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306799    GT:AD:DP:GQ:PL    0/1:9,18:27:99:641,0,294
4    141847110    rs13120735    T    C    591.98    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.085;QD=13.77;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306799    GT:AD:DP:GQ:PL    0/1:22,21:43:99:622,0,722
4    141847279    rs12503723    G    A    207.56    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=17;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=12.21;ReadPosRankSum=1.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306799    GT:AD:DP:GQ:PL    0/1:10,7:17:99:238,0,344
4    141868736    rs2321687    G    T    135.51    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=13;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.831;QD=10.42;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306799    GT:AD:DP:GQ:PL    0/1:8,5:13:99:165,0,183
4    141870277    rs4956493    C    T    83.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306799    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:114,0,31
4    141870648    rs4956494    G    A    70.42    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6229;MQ=58.89;MQ0=0;MQRankSum=-0.403;QD=3.35;ReadPosRankSum=-0.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306799    GT:AD:DP:GQ:PL    0/1:17,4:21:99:100,0,604
4    142151573    rs732624    G    A    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF330;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503649    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
4    142155214    rs3822128    T    C    267.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.443;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.022;QD=14.84;ReadPosRankSum=-1.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF330;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503649    GT:AD:DP:GQ:PL    0/1:8,10:18:99:297,0,282
4    142640538    rs2254514    T    C    1023.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505351    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1056,78,0
4    142640637    rs2857261    A    G    532.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=40;Dels=0.0;FS=4.707;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.392;QD=13.31;ReadPosRankSum=0.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296545    GT:AD:DP:GQ:PL    0/1:20,20:40:99:562,0,635
4    142650868    rs12508335    A    G    34.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.71;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509249    GT:AD:DP:GQ:PL    0/1:4,2:6:64.26:64,0,142
4    142650901    rs7349640    A    G    277.38    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=19.81;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509249    GT:AD:DP:GQ:PL    0/1:5,9:14:99:307,0,156
4    142651159    rs12510030    T    C    674.56    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.958;DB;DP=46;Dels=0.0;FS=2.597;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.737;QD=14.66;ReadPosRankSum=0.649;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509249    GT:AD:DP:GQ:PL    0/1:22,24:46:99:705,0,708
4    142651265    rs17007610    T    C    171.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.909;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.949;QD=7.15;ReadPosRankSum=2.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509249    GT:AD:DP:GQ:PL    0/1:16,8:24:99:202,0,573
4    143003155    rs76457573    G    GA    574.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=7;HaplotypeScore=52.9908;IndelType=I;MQ=60.6;MQ0=0;QD=31.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510812    GT:AD:DP:GQ:PL    1/1:1,17:18:51.16:616,51,0
4    143003526    rs2667118    A    G    72.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510812    GT:AD:DP:GQ:PL    1/1:0,3:3:9:104,9,0
4    143007169    rs2292392    C    A    44.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.9;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510812    GT:AD:DP:GQ:PL    0/1:2,3:5:66.22:74,0,66
4    143007197    rs336325    C    T    240.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510812    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
4    143007419    rs336324    A    G    368.61    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.901;DB;DP=36;Dels=0.0;FS=1.767;HRun=4;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.095;QD=10.24;ReadPosRankSum=2.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:19,17:36:99:399,0,536
4    143007460    rs336323    T    G    376.96    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.493;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.99;MQ0=0;MQRankSum=0.4;QD=16.39;ReadPosRankSum=-1.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:11,12:23:99:407,0,372
4    143033641    rs3822140    T    C    516.33    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.576;DB;DP=39;Dels=0.0;FS=4.639;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.52;QD=13.24;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:20,19:39:99:546,0,606
4    143034019    rs10026333    A    T    132.29    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=16.54;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:3,5:8:95.57:162,0,96
4    143034029    rs12498546    G    A    111.68    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.34;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:142,0,27
4    143034095    rs10519616    C    A    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    143043138    rs2270659    T    C    113.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.58;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:4,5:9:99:143,0,139
4    143043340    rs2270658    A    G    693.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.897;DB;DP=48;Dels=0.0;FS=2.45;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=14.46;ReadPosRankSum=-1.557;SNPEFF_AMINO_ACID_CHANGE=V507;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_143043281_143043398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511838    GT:AD:DP:GQ:PL    0/1:24,24:48:99:724,0,753
4    143044427    rs2270657    T    C    967.27    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.604;DB;DP=70;Dels=0.0;FS=0.968;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.018;QD=13.82;ReadPosRankSum=0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:36,34:70:99:997,0,989
4    143044666    rs2645786    A    C    369.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:403,30,0
4    143114003    rs1845974    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    143114011    rs1497143    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    143114040    rs1497144    A    C    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
4    143114556    rs2636662    A    G    59.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=14.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    1/1:0,4:4:9:91,9,0
4    143114558    rs2636663    G    A    52.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=13.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    1/1:0,4:4:9:85,9,0
4    143129980    .    A    AT    228.98    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.136;DP=34;FS=2.872;HRun=10;HaplotypeScore=155.335;IndelType=I;MQ=60.95;MQ0=0;MQRankSum=1.499;QD=6.73;ReadPosRankSum=-2.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:22,12:34:99:268,0,397
4    143130034    rs1907123    A    T    1856.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1889,147,0
4    143130219    rs1994217    T    A    713.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.023;DB;DP=40;Dels=0.0;FS=5.934;HRun=0;HaplotypeScore=4.2962;MQ=59.42;MQ0=0;MQRankSum=0.814;QD=17.84;ReadPosRankSum=-0.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:16,24:40:99:744,0,562
4    143158979    rs28647625    A    C    300.60    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.429;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.035;QD=14.31;ReadPosRankSum=-0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506297    GT:AD:DP:GQ:PL    0/1:11,10:21:99:331,0,365
4    143181484    rs2636642    G    A    71.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.27;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:2,3:5:64.76:101,0,65
4    143226768    rs2627808    G    T    1338.76    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.908;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5964;MQ=59.73;MQ0=0;MQRankSum=2.502;QD=15.94;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:40,44:84:99:1369,0,1422
4    143226784    rs2636640    G    A    710.97    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.446;DB;DP=57;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.136;QD=12.47;ReadPosRankSum=-2.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262992    GT:AD:DP:GQ:PL    0/1:29,28:57:99:741,0,1058
4    143323915    rs2306913    T    G    64.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.23;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506000    GT:AD:DP:GQ:PL    0/1:4,3:7:94.62:95,0,135
4    143324036    rs1982965    T    C    505.29    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.777;DB;DP=35;Dels=0.0;FS=1.373;HRun=1;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=1.432;QD=14.44;ReadPosRankSum=-0.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506000    GT:AD:DP:GQ:PL    0/1:19,16:35:99:535,0,502
4    144124492    rs4234886    G    A    1343.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307017    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1377,102,0
4    144135718    rs4285045    G    A    886.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=R863;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_144134734_144136096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307017    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:919,72,0
4    144136193    rs10000911    T    G    131.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307017    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
4    144380399    rs13114896    G    A    680.15    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.084;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.763;QD=17.9;ReadPosRankSum=-1.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262994    GT:AD:DP:GQ:PL    0/1:17,21:38:99:710,0,587
4    144381401    rs3795246    A    G    313.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.131;QD=14.27;ReadPosRankSum=0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507070    GT:AD:DP:GQ:PL    0/1:11,11:22:99:344,0,385
4    144447630    rs7694156    T    C    1998.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283131    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2031,159,0
4    144456124    rs6818251    A    G    426.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283131    GT:AD:DP:GQ:PL    1/1:0,17:17:33.11:459,33,0
4    144459637    rs4690724    T    C    568.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283131    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:601,45,0
4    144466050    rs7692376    A    G    1028.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.62;MQ0=0;QD=36.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515531    GT:AD:DP:GQ:PL    1/1:0,27:28:81.25:1062,81,0
4    144467104    rs13139128    T    C    5700.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=N751;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_144467078_144467200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535006    GT:AD:DP:GQ:PL    1/1:0,174:174:99:5700,448,0
4    144468929    rs7687839    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515531    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    144469383    rs2088415    A    G    208.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508573    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
4    144618610    rs1034494    G    C    1920.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_AMINO_ACID_CHANGE=F1073L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_144616644_144621828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329798    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1953,144,0
4    144619314    rs61745865    T    G    479.69    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=59.38;MQ0=0;MQRankSum=0.239;QD=12.96;ReadPosRankSum=-0.43;SNPEFF_AMINO_ACID_CHANGE=I839L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_144616644_144621828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329798    GT:AD:DP:GQ:PL    0/1:20,17:37:99:510,0,682
4    144796495    rs4835058    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428604    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
4    144801662    rs28721877    C    T    3475.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.0173;MQ=53.65;MQ0=8;QD=23.8;SNPEFF_AMINO_ACID_CHANGE=G13E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_144801564_144801662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358615    GT:AD:DP:GQ:PL    1/1:1,104:146:99:3475,268,0
4    144801671    rs146400730    A    C    528.03    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=53.63;MQ0=7;MQRankSum=-2.867;QD=3.85;ReadPosRankSum=-0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358615    GT:AD:DP:GQ:PL    0/1:97,40:137:99:558,0,3320
4    144801779    rs7677044    G    A    739.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.377;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.75;MQ0=2;MQRankSum=1.432;QD=29.57;ReadPosRankSum=-0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358615    GT:AD:DP:GQ:PL    1/1:3,22:25:57.19:772,57,0
4    144809800    rs143390057    C    A    1728.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.83;MQ0=13;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358615    GT:AD:DP:GQ:PL    1/1:5,73:78:99:1761,171,0
4    144917514    rs1980037    A    C    128.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429670    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
4    144917616    rs6537238    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429670    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    144918521    rs71590423    C    CAA    361.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=10;HaplotypeScore=46.6387;IndelType=I;MQ=55.96;MQ0=0;QD=40.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429670    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:403,27,0
4    144918867    rs1473055    A    G    2312.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6918;MQ=59.3;MQ0=0;QD=38.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508618    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2345,175,0
4    144918893    rs4835126    A    G    1604.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508618    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1637,123,0
4    144918900    rs1849110    G    A    1484.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508618    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1517,111,0
4    144921588    rs144801086    A    G    841.55    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.061;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.19;MQ0=0;MQRankSum=1.214;QD=12.95;ReadPosRankSum=0.432;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283126    GT:AD:DP:GQ:PL    0/1:35,30:65:99:872,0,1120
4    144921607    rs1849119    C    T    1793.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=3.5097;MQ=58.99;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283126    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1827,135,0
4    144922549    rs6537239    G    A    589.98    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.633;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.93;MQ0=0;MQRankSum=1.474;QD=16.86;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283126    GT:AD:DP:GQ:PL    0/1:16,19:35:99:620,0,514
4    144940333    rs41279321    G    C    216.11    MQFilter40    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.138;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=34.64;MQ0=1;MQRankSum=0.529;QD=6.97;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GYPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283126    GT:AD:DP:GQ:PL    0/1:19,12:31:99:246,0,429
4    145035051    rs145493430    G    A    70.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=10.12;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394119    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,147
4    145035788    rs6857303    G    A    206.04    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.977;QD=17.17;ReadPosRankSum=-0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394119    GT:AD:DP:GQ:PL    0/1:5,7:12:99:236,0,171
4    145037980    rs6824244    C    G    3534.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9522;MQ=59.59;MQ0=0;QD=35.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394119    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3535,259,0
4    145040784    rs62334651    T    C    271.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.766;DB;DP=15;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=52.4;MQ0=0;MQRankSum=-0.884;QD=18.13;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324022    GT:AD:DP:GQ:PL    0/1:6,9:15:99:302,0,197
4    145040962    rs6857144    C    G    354.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.3;MQ0=0;QD=19.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324022    GT:AD:DP:GQ:PL    1/1:0,18:18:39.02:388,39,0
4    145040963    rs6833563    A    T    346.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=21.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324022    GT:AD:DP:GQ:PL    1/1:0,16:16:39.02:379,39,0
4    145041577    rs111643702    C    T    309.71    MQFilter40    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.153;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9848;MQ=39.64;MQ0=2;MQRankSum=-0.725;QD=7.94;ReadPosRankSum=-1.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324022    GT:AD:DP:GQ:PL    0/1:23,15:39:99:340,0,787
4    145041686    rs4867    A    G    1564.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.89;MQ0=7;QD=28.45;SNPEFF_AMINO_ACID_CHANGE=T31;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_145041643_145041741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360771    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1598,144,0
4    145041741    rs4449373    T    G    1177.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.9;MQ0=6;QD=25.6;SNPEFF_AMINO_ACID_CHANGE=E13A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_145041643_145041741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360771    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1210,105,0
4    145041750    rs45468202    A    C    63.97    MQFilter40;QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.375;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.61;MQ0=6;MQRankSum=1.08;QD=1.45;ReadPosRankSum=-0.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324022    GT:AD:DP:GQ:PL    0/1:34,10:44:93.96:94,0,1044
4    145061822    rs71590434    CA    C    333.47    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=2.27;DB;DP=43;FS=6.292;HRun=7;HaplotypeScore=130.9309;IndelType=D;MQ=38.44;MQ0=7;MQRankSum=-1.699;QD=5.95;ReadPosRankSum=0.871;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509346    GT:AD:DP:GQ:PL    0/1:38,18:43:99:373,0,743
4    145568352    rs7689420    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296575    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    145579907    rs6537301    G    A    1318.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296575    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1352,102,0
4    145580290    rs1355601    C    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515080    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    145580585    rs1355602    A    C    63.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515080    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
4    145629630    rs2254637    A    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296575    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    145636732    rs6537310    T    C    422.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296575    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:456,33,0
4    145640345    rs2276934    C    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512791    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    145655769    rs71590474    T    TA    130.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.48;DB;DP=11;FS=0.0;HRun=13;HaplotypeScore=87.5925;IndelType=I;MQ=56.71;MQ0=0;MQRankSum=0.48;QD=11.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296575    GT:AD:DP:GQ:PL    1/1:3,7:11:0.86:168,1,0
4    145656211    rs11100867    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296575    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
4    145916505    rs35428482    AT    A    698.99    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=4.803;DB;DP=42;FS=1.684;HRun=4;HaplotypeScore=102.7338;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=0.437;QD=16.64;ReadPosRankSum=1.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513054    GT:AD:DP:GQ:PL    0/1:17,25:42:99:738,0,576
4    145985616    rs35754508    C    T    546.62    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.847;DB;DP=46;Dels=0.0;FS=6.761;HRun=5;HaplotypeScore=3.3927;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=11.88;ReadPosRankSum=-1.983;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504721    GT:AD:DP:GQ:PL    0/1:26,20:46:99:577,0,783
4    146016997    rs1349990    T    C    546.14    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.579;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.679;QD=10.5;ReadPosRankSum=-1.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309439    GT:AD:DP:GQ:PL    0/1:30,21:52:99:576,0,1009
4    146042445    rs10519725    G    C    1165.71    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.997;DB;DP=106;Dels=0.0;FS=1.639;HRun=0;HaplotypeScore=0.9998;MQ=59.78;MQ0=0;MQRankSum=-0.179;QD=11.0;ReadPosRankSum=-0.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504292    GT:AD:DP:GQ:PL    0/1:63,43:106:99:1196,0,2070
4    146046138    rs4835203    T    C    1874.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=58.93;MQ0=0;QD=28.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502803    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1907,150,0
4    146048554    rs4148234    T    C    94.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=8.55;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502803    GT:AD:DP:GQ:PL    0/1:6,4:11:99:124,0,215
4    146048583    rs1378314    T    G    486.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502803    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:519,39,0
4    146065006    rs9991890    C    T    552.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OTUD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509517    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:585,45,0
4    146077132    rs36225838    C    T    614.32    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.623;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.317;QD=12.05;ReadPosRankSum=1.538;SNPEFF_AMINO_ACID_CHANGE=A151T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_146077088_146077148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OTUD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454497    GT:AD:DP:GQ:PL    0/1:29,22:51:99:644,0,834
4    146080577    rs35205083    AT    A    903.93    PASS    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=6.432;DB;DP=70;FS=0.0;HRun=3;HaplotypeScore=162.1739;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.052;QD=12.91;ReadPosRankSum=0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OTUD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504501    GT:AD:DP:GQ:PL    0/1:39,31:70:99:943,0,1469
4    146086269    rs17726651    C    T    351.76    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.785;DB;DP=24;Dels=0.0;FS=3.203;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.215;QD=14.66;ReadPosRankSum=-1.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OTUD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296579    GT:AD:DP:GQ:PL    0/1:11,13:24:99:382,0,405
4    146463966    rs1497126    T    C    163.17    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.244;QD=9.6;ReadPosRankSum=0.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502342    GT:AD:DP:GQ:PL    0/1:10,7:17:99:193,0,336
4    146475243    rs10715854    CT    C    30.62    QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=43;FS=0.0;HRun=17;HaplotypeScore=284.0437;IndelType=D;MQ=53.48;MQ0=0;MQRankSum=0.702;QD=0.71;ReadPosRankSum=2.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510948    GT:AD:DP:GQ:PL    0/1:27,12:43:69.65:70,0,153
4    146478779    rs1016792    C    T    202.76    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.87;MQ0=0;MQRankSum=0.678;QD=18.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510948    GT:AD:DP:GQ:PL    0/1:4,7:11:99:233,0,133
4    146574977    rs2279717    T    C    81.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=13.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281317    GT:AD:DP:GQ:PL    0/1:3,3:6:67.94:112,0,68
4    146601680    rs7683750    C    T    52.59    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=4.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438731    GT:AD:DP:GQ:PL    0/1:9,3:12:82.58:83,0,297
4    146601701    rs7682360    G    A    55.43    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=5.04;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438731    GT:AD:DP:GQ:PL    0/1:8,3:11:85.43:85,0,291
4    146617590    rs13104422    T    C    427.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438731    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:460,36,0
4    146686561    rs4348115    C    A    152.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF827;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281318    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
4    146700781    rs9308196    A    T    249.65    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=16.64;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF827;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281318    GT:AD:DP:GQ:PL    0/1:7,8:15:99:280,0,241
4    146767313    rs34221205    C    A    109.97    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.99;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF827;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511534    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:140,0,25
4    146770389    rs71973224    GT    G    192.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.199;DB;DP=22;FS=0.0;HRun=11;HaplotypeScore=92.0056;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=8.76;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF827;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511534    GT:AD:DP:GQ:PL    1/1:14,8:22:26.83:235,27,0
4    146770400    rs63620462    T    A    270.38    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.428;DB;DP=28;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.276;QD=9.66;ReadPosRankSum=1.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF827;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511534    GT:AD:DP:GQ:PL    0/1:13,15:28:99:300,0,146
4    146806762    rs71925482    CAGAGAG    C    485.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=170.4553;IndelType=D;MQ=46.36;MQ0=0;QD=20.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF827;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281318    GT:AD:DP:GQ:PL    1/1:12,10:24:33.08:528,33,0
4    147177868    rs113500807    T    TC    234.10    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.103;DB;DP=17;FS=0.0;HRun=4;HaplotypeScore=40.96;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=13.77;ReadPosRankSum=-2.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394062    GT:AD:DP:GQ:PL    0/1:10,7:17:99:273,0,224
4    147214029    rs12711434    C    A    289.80    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.674;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.857;QD=14.49;ReadPosRankSum=2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264986    GT:AD:DP:GQ:PL    0/1:10,9:20:99:320,0,313
4    147364052    rs1344140    C    T    138.42    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=17.3;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264986    GT:AD:DP:GQ:PL    0/1:1,7:8:21.95:168,0,22
4    147425114    rs7439061    A    T    789.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264986    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:823,66,0
4    147431302    rs6816737    G    A    155.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502607    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:188,15,0
4    147438019    rs3914628    T    C    411.58    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=0.509;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.787;QD=21.66;ReadPosRankSum=-0.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264986    GT:AD:DP:GQ:PL    0/1:5,14:19:99:442,0,145
4    147560199    rs35733768    G    A    78.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.65;ReadPosRankSum=1.231;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_4_147560045_147560580;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU4F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281321    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:108,0,66
4    147560411    rs13152799    T    C    53.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=0.406;QD=8.96;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=I40T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_147560045_147560580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU4F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281321    GT:AD:DP:GQ:PL    0/1:3,3:6:83.74:84,0,100
4    147560457    rs67907220    TGGCGGCGGC    T    162.08    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=145.4376;IndelType=D;MQ=41.02;MQ0=0;MQRankSum=-0.361;QD=12.47;ReadPosRankSum=1.307;SNPEFF_AMINO_ACID_CHANGE=GGG56-;SNPEFF_CODON_CHANGE=ggcggcggc/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_4_147560045_147560580;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU4F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281321    GT:AD:DP:GQ:PL    0/1:5,6:13:99:201,0,509
4    147560692    rs1504360    T    A    341.75    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=54.95;MQ0=0;MQRankSum=0.38;QD=17.99;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU4F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281321    GT:AD:DP:GQ:PL    0/1:7,12:19:99:372,0,199
4    147561654    rs3827594    C    G    980.72    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.518;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=58.98;MQ0=0;MQRankSum=-0.028;QD=13.43;ReadPosRankSum=-1.303;SNPEFF_AMINO_ACID_CHANGE=S308;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_147561019_147563626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU4F2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281321    GT:AD:DP:GQ:PL    0/1:35,38:73:99:1011,0,1129
4    147561971    rs3810843    G    T    408.59    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.613;QD=13.18;ReadPosRankSum=-1.127;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU4F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281321    GT:AD:DP:GQ:PL    0/1:16,15:31:99:439,0,461
4    147628903    rs905712    C    T    158.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325106    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:191,15,0
4    147741077    rs56374322    A    G    75.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9562;MQ=57.66;MQ0=0;MQRankSum=1.036;QD=7.5;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325106    GT:AD:DP:GQ:PL    0/1:6,4:10:99:105,0,214
4    147788709    rs10013280    C    T    557.94    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.644;DB;DP=43;Dels=0.0;FS=4.591;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.425;QD=12.98;ReadPosRankSum=-1.397;SNPEFF_AMINO_ACID_CHANGE=A276T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_147788650_147788735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC29;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325106    GT:AD:DP:GQ:PL    0/1:22,21:43:99:588,0,707
4    147824864    rs17610219    G    A    1478.56    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.365;DB;DP=96;Dels=0.0;FS=0.894;HRun=0;HaplotypeScore=0.5784;MQ=59.76;MQ0=0;MQRankSum=-0.287;QD=15.4;ReadPosRankSum=0.631;SNPEFF_AMINO_ACID_CHANGE=H140Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_147824696_147824881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC29;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325106    GT:AD:DP:GQ:PL    0/1:40,55:96:99:1509,0,1280
4    147830499    rs3810844    C    T    615.45    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=3.557;DB;DP=66;Dels=0.0;FS=1.421;HRun=4;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;MQRankSum=0.534;QD=9.33;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325106    GT:AD:DP:GQ:PL    0/1:37,29:66:99:645,0,1205
4    148441139    rs4835412    G    A    1293.80    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.81;DB;DP=99;Dels=0.0;FS=1.683;HRun=0;HaplotypeScore=2.4875;MQ=59.77;MQ0=0;MQRankSum=0.228;QD=13.07;ReadPosRankSum=-1.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDNRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324300    GT:AD:DP:GQ:PL    0/1:47,52:99:99:1324,0,1399
4    148463840    rs5335    G    C    686.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDNRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503721    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:720,54,0
4    148545425    rs1503863    T    G    131.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296582    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
4    148560357    rs2654935    C    T    384.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296582    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:417,33,0
4    148589677    rs2718454    C    T    766.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322396    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:799,60,0
4    148591769    rs2036502    G    T    2620.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7323;MQ=59.12;MQ0=0;QD=35.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322396    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2653,202,0
4    148601729    rs7666065    C    T    120.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322396    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
4    148604885    .    TG    T    108.59    PASS    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=0.238;DP=43;FS=1.537;HRun=1;HaplotypeScore=399.7867;IndelType=D;MQ=45.43;MQ0=0;MQRankSum=0.555;QD=2.53;ReadPosRankSum=-3.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322396    GT:AD:DP:GQ:PL    0/1:35,7:43:99:148,0,109
4    148778685    rs11410393    G    GT    254.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=23.6961;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=21.2;ReadPosRankSum=0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:2,10:12:8.43:295,8,0
4    148796464    rs7663294    C    G    45.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
4    148800299    rs13147854    A    G    511.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:545,48,0
4    148827697    rs71594245    T    TA    376.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=10;HaplotypeScore=118.1394;IndelType=I;MQ=57.52;MQ0=0;QD=25.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:3,12:15:41.31:419,41,0
4    148827747    rs12509618    A    C    1257.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1291,93,0
4    148827973    rs11099672    A    G    669.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:702,51,0
4    148828034    rs11734553    A    G    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
4    148831070    rs4627844    A    G    336.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:369,27,0
4    148888111    rs57437177    G    A    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
4    148984082    rs2884401    G    C    44.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=11.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:74,0,33
4    148984321    rs2276932    A    G    847.31    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=61;Dels=0.0;FS=9.253;HRun=0;HaplotypeScore=0.8321;MQ=58.55;MQ0=0;MQRankSum=1.264;QD=13.89;ReadPosRankSum=-1.047;SNPEFF_AMINO_ACID_CHANGE=M684V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_148984299_148984451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336498    GT:AD:DP:GQ:PL    0/1:32,29:61:99:877,0,1035
4    148985720    rs3775327    T    C    400.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARHGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513548    GT:AD:DP:GQ:PL    1/1:0,14:14:39.08:433,39,0
4    149002667    rs61763143    G    C    108.97    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.989;DB;DP=18;Dels=0.0;FS=9.901;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.091;QD=6.05;ReadPosRankSum=-2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342437    GT:AD:DP:GQ:PL    0/1:11,7:18:99:139,0,331
4    149035449    rs1879829    T    C    329.50    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.905;QD=15.69;ReadPosRankSum=-1.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342437    GT:AD:DP:GQ:PL    0/1:8,13:21:99:359,0,259
4    149073555    rs2272089    C    T    505.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;QD=38.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503174    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:538,39,0
4    149076195    rs7668847    A    G    54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342437    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
4    149116035    rs4835500    A    G    3033.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342437    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3066,223,0
4    149116159    rs3910056    T    C    279.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342437    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:312,24,0
4    149180903    rs1429915    T    A    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342437    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
4    149356516    rs5525    A    G    2770.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=D499;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_149356256_149358014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342437    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2804,214,0
4    149357475    rs5522    C    T    2498.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=35.69;SNPEFF_AMINO_ACID_CHANGE=V180I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_149356256_149358014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342437    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2531,187,0
4    149358014    rs2070951    G    C    611.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR3C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511528    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:644,48,0
4    151161342    rs6812795    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296550    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    151161470    rs11931842    A    G    124.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=15.59;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296550    GT:AD:DP:GQ:PL    0/1:2,6:8:62.93:155,0,63
4    151161490    rs6838238    T    C    383.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296550    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:416,30,0
4    151161502    rs6813035    G    T    452.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296550    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:485,39,0
4    151170387    rs1459750    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296550    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
4    151177340    rs13152819    C    T    85.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.21;SNPEFF_AMINO_ACID_CHANGE=P747S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_151177172_151177399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506325    GT:AD:DP:GQ:PL    1/1:0,7:7:12.01:118,12,0
4    151177341    rs60939896    C    G    83.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.97;SNPEFF_AMINO_ACID_CHANGE=P747R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_151177172_151177399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506325    GT:AD:DP:GQ:PL    1/1:0,7:7:12.01:116,12,0
4    151198823    rs1870515    T    A    372.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;DB;DP=22;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=3.999;MQ=58.14;MQ0=0;MQRankSum=0.971;QD=16.91;ReadPosRankSum=0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:2,20:22:12.46:405,12,0
4    151231371    rs1813134    T    C    1733.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.58;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507224    GT:AD:DP:GQ:PL    1/1:1,53:55:99:1767,138,0
4    151271452    rs13145548    A    G    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:168,12,0
4    151336477    rs191232083    C    T    209.69    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.296;QD=20.97;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    0/1:3,7:10:95.79:240,0,96
4    151393093    rs7673944    G    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
4    151408800    rs7674989    T    C    879.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513021    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:913,66,0
4    151505322    rs13105060    T    A    699.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,20:20:54.15:733,54,0
4    151511715    rs4401437    T    G    281.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,10:11:27.08:314,27,0
4    151641186    rs10520078    A    G    698.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,23:23:51.17:731,51,0
4    151656589    rs1993109    C    T    1137.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,29:29:87.27:1171,87,0
4    151765243    rs186080    G    A    3321.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6594;MQ=59.13;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3322,244,0
4    151821509    rs1148648    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    151821576    rs1365380    C    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    151826788    rs1201213    A    C    127.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
4    151829659    rs1201207    T    C    845.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357115    GT:AD:DP:GQ:PL    1/1:0,29:29:69.22:879,69,0
4    152024326    rs4696658    T    G    186.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.3;MQ0=0;QD=26.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503002    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:219,18,0
4    152025273    rs3830541    G    GCTTAT    1661.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=73.7165;IndelType=I;MQ=52.78;MQ0=0;QD=83.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322686    GT:AD:DP:GQ:PL    1/1:2,14:20:60.21:1703,60,0
4    152048936    rs11099782    A    T    122.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304527    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:155,15,0
4    152053408    rs7664483    G    A    444.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304527    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:477,36,0
4    152065684    rs6818900    A    G    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304527    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
4    152069566    rs6846323    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304527    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
4    152070633    rs3792611    T    A    414.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3D19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304527    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:448,33,0
4    152201053    rs36097019    G    A    2384.04    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.958;DB;DP=186;Dels=0.0;FS=5.672;HRun=0;HaplotypeScore=2.5676;MQ=59.4;MQ0=0;MQRankSum=-0.085;QD=12.82;ReadPosRankSum=0.057;SNPEFF_AMINO_ACID_CHANGE=C53Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_152200948_152201110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455694    GT:AD:DP:GQ:PL    0/1:102,84:186:99:2414,0,3147
4    152201204    rs1875308    A    G    2887.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.999;MQ=57.9;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441586    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2921,229,0
4    152201206    .    T    TAGGCAGGGCGGAAGGAAACCCAGGTCATGTCAGACTATCAAACCCGAAACAACTAG    2515.64    PASS    AB=0.931;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DP=81;FS=0.0;HRun=0;HaplotypeScore=3087.5585;IndelType=I;MQ=56.99;MQ0=0;MQRankSum=-2.927;QD=31.06;ReadPosRankSum=-2.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441586    GT:AD:DP:GQ:PL    0/1:75,4:81:99:2555,0,202
4    152204604    rs2407168    G    A    264.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=24.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441586    GT:AD:DP:GQ:PL    1/1:0,11:11:24.06:298,24,0
4    152212486    rs13126069    C    T    2062.65    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=5.298;DB;DP=160;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=59.86;MQ0=0;MQRankSum=0.641;QD=12.89;ReadPosRankSum=2.138;SNPEFF_AMINO_ACID_CHANGE=R147C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_152212270_152212605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441586    GT:AD:DP:GQ:PL    0/1:84,76:160:99:2093,0,2279
4    152212603    rs2407221    T    G    1756.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_AMINO_ACID_CHANGE=*186E;SNPEFF_CODON_CHANGE=Taa/Gaa;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_4_152212270_152212605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS48;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000441586    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1790,132,0
4    152212704    rs13102005    T    A    92.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=-1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441586    GT:AD:DP:GQ:PL    0/1:4,5:9:99:122,0,135
4    152487027    rs72728182    T    C    285.92    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=23;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=-0.525;QD=12.43;ReadPosRankSum=0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM160A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435205    GT:AD:DP:GQ:PL    0/1:11,12:23:99:316,0,369
4    152498625    rs17275536    C    T    1329.50    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=3.768;DB;DP=103;Dels=0.0;FS=1.628;HRun=0;HaplotypeScore=0.9665;MQ=59.55;MQ0=0;MQRankSum=0.305;QD=12.91;ReadPosRankSum=2.27;SNPEFF_AMINO_ACID_CHANGE=H43;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_152498602_152499228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM160A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435205    GT:AD:DP:GQ:PL    0/1:59,43:103:99:1359,0,1624
4    152592191    rs4571    T    C    364.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.14;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;MQRankSum=0.796;QD=20.27;ReadPosRankSum=0.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513504    GT:AD:DP:GQ:PL    0/1:6,12:18:99:395,0,195
4    152592469    rs112033226    A    ATTAC    862.13    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.646;DB;DP=37;FS=2.022;HRun=0;HaplotypeScore=133.5234;IndelType=I;MQ=58.41;MQ0=0;MQRankSum=-1.172;QD=23.3;ReadPosRankSum=0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263985    GT:AD:DP:GQ:PL    0/1:24,13:37:99:901,0,797
4    152601146    rs907237    T    G    388.91    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.822;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.952;QD=15.56;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263985    GT:AD:DP:GQ:PL    0/1:13,12:25:99:419,0,451
4    152609694    rs6535814    A    G    475.01    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.148;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=57.57;MQ0=0;MQRankSum=1.181;QD=16.38;ReadPosRankSum=0.344;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505211    GT:AD:DP:GQ:PL    0/1:10,19:29:99:505,0,283
4    152609700    rs6535815    A    C    646.72    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=35;Dels=0.0;FS=5.291;HRun=1;HaplotypeScore=0.9916;MQ=57.31;MQ0=0;MQRankSum=1.191;QD=18.48;ReadPosRankSum=-0.586;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505211    GT:AD:DP:GQ:PL    0/1:11,24:35:99:677,0,301
4    152609920    rs11332666    TA    T    553.44    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=92;FS=0.0;HRun=13;HaplotypeScore=408.2896;IndelType=D;MQ=57.88;MQ0=0;MQRankSum=-0.118;QD=6.02;ReadPosRankSum=0.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263985    GT:AD:DP:GQ:PL    0/1:54,35:92:99:592,0,676
4    152609998    rs11390610    C    CA    499.51    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.336;DB;DP=28;FS=3.332;HRun=0;HaplotypeScore=76.4518;IndelType=I;MQ=56.79;MQ0=0;MQRankSum=0.138;QD=17.84;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263985    GT:AD:DP:GQ:PL    0/1:16,12:28:99:539,0,539
4    152610117    rs3749561    T    C    34.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263985    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:64,0,24
4    152679722    rs6535822    A    G    60.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.16;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263985    GT:AD:DP:GQ:PL    0/1:3,3:6:90.93:91,0,108
4    152679816    rs3828546    A    G    377.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.53;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.348;QD=13.46;ReadPosRankSum=0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263985    GT:AD:DP:GQ:PL    0/1:16,12:28:99:407,0,550
4    152681952    rs1429559    A    G    306.69    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=25;Dels=0.0;FS=1.799;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=12.27;ReadPosRankSum=0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PET112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263985    GT:AD:DP:GQ:PL    0/1:14,11:25:99:337,0,457
4    153249146    rs4419460    T    C    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263981    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
4    153267968    rs2714803    A    G    664.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263981    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:698,54,0
4    153565641    rs12650966    A    G    801.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504064    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:834,60,0
4    153884092    rs58275172    G    GGT    287.93    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=31;FS=3.245;HRun=0;HaplotypeScore=154.0265;IndelType=I;MQ=52.67;MQ0=0;MQRankSum=-0.367;QD=9.29;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260008    GT:AD:DP:GQ:PL    0/1:21,9:31:99:327,0,237
4    153889462    rs2090383    C    T    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260008    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
4    153893354    rs11099864    G    A    37.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.46;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260008    GT:AD:DP:GQ:PL    0/1:2,3:5:67.28:67,0,70
4    153896358    rs3811833    C    T    825.38    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=4.392;DB;DP=72;Dels=0.0;FS=2.275;HRun=0;HaplotypeScore=1.8245;MQ=59.03;MQ0=0;MQRankSum=0.193;QD=11.46;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=R639C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_153895827_153900848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260008    GT:AD:DP:GQ:PL    0/1:42,29:72:99:855,0,1228
4    153897770    rs3811832    G    A    74.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=7.42;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=T1109;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_153895827_153900848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260008    GT:AD:DP:GQ:PL    0/1:4,6:10:99:104,0,147
4    154197234    rs2289409    T    G    844.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_AMINO_ACID_CHANGE=T108;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154197045_154197282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437508    GT:AD:DP:GQ:PL    1/1:0,28:28:69.18:878,69,0
4    154216710    rs893805    G    A    1048.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=T317;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154216465_154217188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437508    GT:AD:DP:GQ:PL    1/1:0,31:31:81.25:1081,81,0
4    154265827    rs71620253    T    G    127.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503967    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:161,15,0
4    154387597    rs71620317    G    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_AMINO_ACID_CHANGE=A16;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154387498_154387673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409663    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    154476924    rs6828373    T    C    748.86    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.617;DB;DP=60;Dels=0.0;FS=2.599;HRun=0;HaplotypeScore=0.9999;MQ=59.62;MQ0=0;MQRankSum=-1.073;QD=12.48;ReadPosRankSum=-1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409663    GT:AD:DP:GQ:PL    0/1:29,31:60:99:779,0,967
4    154478000    rs10639508    T    TAAATC    1927.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.326;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=158.459;IndelType=I;MQ=54.91;MQ0=0;MQRankSum=-1.713;QD=50.73;ReadPosRankSum=0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:19,17:38:99:1967,0,704
4    154512437    rs17279148    A    G    427.09    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.285;QD=14.73;ReadPosRankSum=0.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509565    GT:AD:DP:GQ:PL    0/1:16,13:29:99:457,0,533
4    154513531    rs1371158    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    154513627    rs7669418    A    G    401.68    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=31;Dels=0.0;FS=9.505;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=12.96;ReadPosRankSum=-1.576;SNPEFF_AMINO_ACID_CHANGE=I604V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154513627_154513736;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409663    GT:AD:DP:GQ:PL    0/1:16,15:31:99:432,0,511
4    154513722    rs7669741    C    T    407.76    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.009;DB;DP=38;Dels=0.0;FS=4.847;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=10.73;ReadPosRankSum=-0.015;SNPEFF_AMINO_ACID_CHANGE=H635;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154513627_154513736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409663    GT:AD:DP:GQ:PL    0/1:20,18:38:99:438,0,691
4    154513856    rs893628    G    C    140.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=15.66;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:4,5:9:99:171,0,139
4    154513927    rs7670485    G    C    40.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.15;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:2,2:4:69.18:71,0,69
4    154514847    rs13109887    T    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:75,0,30
4    154514918    rs17279217    T    C    268.30    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.35;MQ0=0;MQRankSum=-0.048;QD=15.78;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:8,9:17:99:298,0,260
4    154514965    rs17370297    T    C    420.36    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.411;DB;DP=25;Dels=0.0;FS=1.935;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.341;QD=16.81;ReadPosRankSum=-0.356;SNPEFF_AMINO_ACID_CHANGE=M423T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154514951_154515023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:11,14:25:99:450,0,382
4    154517215    rs7690279    A    G    33.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:2,2:4:63.63:64,0,70
4    154517294    rs7690932    G    T    310.98    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.22;QD=14.14;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:12,10:22:99:341,0,386
4    154519658    rs13118469    A    G    321.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.532;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.113;QD=16.06;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:10,10:20:99:351,0,305
4    154519666    rs13118949    G    C    255.89    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=1.068;QD=10.24;ReadPosRankSum=0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:14,11:25:99:286,0,418
4    154519679    rs13145743    T    C    300.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.077;QD=11.55;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:14,12:26:99:330,0,425
4    154525670    rs73856931    T    C    558.22    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.981;QD=18.01;ReadPosRankSum=0.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497247    GT:AD:DP:GQ:PL    0/1:13,18:31:99:588,0,422
4    154542161    rs3761657    C    A    58.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.55;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:6,3:9:88.93:89,0,221
4    154548652    rs141485595    C    T    68.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.39;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240487    GT:AD:DP:GQ:PL    0/1:3,3:6:98.32:98,0,110
4    154555505    rs181769972    A    G    861.39    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=3.203;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.564;QD=20.51;ReadPosRankSum=1.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478919    GT:AD:DP:GQ:PL    0/1:17,25:42:99:891,0,569
4    154556798    rs2278576    C    G    379.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478919    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:413,30,0
4    154557383    rs142471814    ATG    A    1291.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=164.0597;IndelType=D;MQ=39.41;MQ0=0;QD=41.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478919    GT:AD:DP:GQ:PL    1/1:2,29:31:93.31:1333,93,0
4    154557405    rs70963193    CT    C    1333.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.094;DB;DP=58;FS=0.0;HRun=10;HaplotypeScore=278.9979;IndelType=D;MQ=48.76;MQ0=0;MQRankSum=-0.598;QD=23.0;ReadPosRankSum=1.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0922;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478919    GT:AD:DP:GQ:PL    1/1:4,54:58:99:1376,135,0
4    154624656    rs3804099    T    C    786.64    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.663;DB;DP=69;Dels=0.0;FS=10.726;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;MQRankSum=1.835;QD=11.4;ReadPosRankSum=0.054;SNPEFF_AMINO_ACID_CHANGE=N199;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154622652_154626851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260010    GT:AD:DP:GQ:PL    0/1:37,32:69:99:817,0,1169
4    154625682    rs5743700    C    T    670.56    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.82;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.536;QD=16.76;ReadPosRankSum=-1.536;SNPEFF_AMINO_ACID_CHANGE=F541;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154622652_154626851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260010    GT:AD:DP:GQ:PL    0/1:18,22:40:99:701,0,567
4    154631543    rs2405432    A    T    1969.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=I322N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154631277_154631641;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347063    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2003,147,0
4    154631563    rs1339    T    C    889.32    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.512;DB;DP=60;Dels=0.0;FS=9.45;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.281;QD=14.82;ReadPosRankSum=0.187;SNPEFF_AMINO_ACID_CHANGE=I315M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154631277_154631641;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347063    GT:AD:DP:GQ:PL    0/1:28,32:60:99:919,0,743
4    154631587    rs1337    C    G    497.54    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.883;DB;DP=48;Dels=0.0;FS=6.115;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.087;QD=10.37;ReadPosRankSum=-0.204;SNPEFF_AMINO_ACID_CHANGE=L307F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154631277_154631641;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347063    GT:AD:DP:GQ:PL    0/1:28,20:48:99:528,0,932
4    154633734    rs2289318    G    C    1610.31    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.155;DB;DP=123;Dels=0.0;FS=5.64;HRun=1;HaplotypeScore=0.9916;MQ=59.62;MQ0=0;MQRankSum=-0.408;QD=13.09;ReadPosRankSum=-0.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274068    GT:AD:DP:GQ:PL    0/1:66,57:123:99:1640,0,1971
4    154641072    rs2579910    G    A    157.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506505    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:190,15,0
4    154641123    rs72731652    A    T    73.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506505    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:103,0,67
4    154641150    rs2579909    G    T    65.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=7.31;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506505    GT:AD:DP:GQ:PL    0/1:6,3:9:95.80:96,0,192
4    154641489    rs1439166    T    C    2966.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507512    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2999,244,0
4    154644250    rs1439167    C    T    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507512    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
4    154644454    rs1456384    T    C    2162.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.63;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507512    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2195,165,0
4    154644537    rs10517577    T    C    1858.73    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.053;DB;DP=129;Dels=0.0;FS=0.673;HRun=0;HaplotypeScore=3.1367;MQ=60.0;MQ0=0;MQRankSum=-1.023;QD=14.41;ReadPosRankSum=0.486;SNPEFF_AMINO_ACID_CHANGE=M159V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154644503_154644610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347063    GT:AD:DP:GQ:PL    0/1:61,67:129:99:1889,0,1836
4    154669733    rs62325093    G    A    229.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.06;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.596;QD=9.55;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274068    GT:AD:DP:GQ:PL    0/1:15,9:24:99:259,0,533
4    154669993    .    C    CAAAA    1033.28    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.564;DP=46;FS=0.0;HRun=8;HaplotypeScore=246.7231;IndelType=I;MQ=58.52;MQ0=0;MQRankSum=0.073;QD=22.46;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274068    GT:AD:DP:GQ:PL    0/1:27,14:46:99:1072,0,693
4    154709480    rs3810765    G    A    160.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=17;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=54.61;MQ0=0;MQRankSum=0.788;QD=9.44;ReadPosRankSum=-1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274063    GT:AD:DP:GQ:PL    0/1:8,8:17:99:191,0,231
4    154709856    rs6535952    A    C    1471.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.11;MQ0=0;QD=28.3;SNPEFF_AMINO_ACID_CHANGE=P44;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_154709486_154710272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274063    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1504,117,0
4    155156207    rs7655799    G    A    1668.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.8;SNPEFF_AMINO_ACID_CHANGE=D2744;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155155527_155158311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1701,126,0
4    155157871    rs111455548    A    G    508.37    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=2.197;DB;DP=26;Dels=0.0;FS=1.906;HRun=0;HaplotypeScore=0.9967;MQ=58.2;MQ0=0;MQRankSum=2.023;QD=19.55;ReadPosRankSum=0.809;SNPEFF_AMINO_ACID_CHANGE=L2190;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155155527_155158311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:7,19:26:99:538,0,171
4    155158090    rs111684589    A    C    1298.23    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=1.667;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.643;QD=18.55;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=S2117A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155155527_155158311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:25,44:70:99:1328,0,716
4    155160424    .    A    AC    475.80    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=3.947;DP=40;FS=3.053;HRun=4;HaplotypeScore=144.8434;IndelType=I;MQ=60.81;MQ0=0;MQRankSum=0.076;QD=11.9;ReadPosRankSum=-1.752;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_155160322_155160454;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:23,17:40:99:515,0,570
4    155161666    rs6535989    C    T    603.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:637,48,0
4    155190927    rs11412936    T    TA    222.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=16.2882;IndelType=I;MQ=61.34;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:264,21,0
4    155191278    rs4386583    G    C    216.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
4    155225783    rs140146384    A    AC    111.78    PASS    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.159;DB;DP=33;FS=2.607;HRun=0;HaplotypeScore=279.7306;IndelType=I;MQ=52.45;MQ0=0;MQRankSum=2.437;QD=3.39;ReadPosRankSum=-1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:28,5:33:99:151,0,524
4    155225784    rs10522300    AAAACAAAC    A    931.94    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.737;DB;DP=33;FS=9.868;HRun=0;HaplotypeScore=335.6207;IndelType=D;MQ=52.45;MQ0=0;MQRankSum=-1.694;QD=28.24;ReadPosRankSum=0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:12,16:33:99:971,0,1095
4    155225784    rs1352715    A    C    100.82    HaplotypeScoreFilter13    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.945;DB;DP=33;Dels=0.0;FS=8.647;HRun=0;HaplotypeScore=137.6968;MQ=52.45;MQ0=0;MQRankSum=1.533;QD=3.06;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:25,8:33:99:131,0,432
4    155226421    rs12507663    C    A    215.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=11.97;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:10,8:18:99:245,0,325
4    155236778    rs1388085    C    G    601.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:634,48,0
4    155241438    rs11935503    G    A    116.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=7.75;ReadPosRankSum=0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    0/1:10,5:15:99:146,0,358
4    155241572    rs11935573    G    A    1029.87    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.94;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=59.34;MQ0=0;MQRankSum=-0.994;QD=12.12;ReadPosRankSum=0.13;SNPEFF_AMINO_ACID_CHANGE=S1205L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155241531_155242374;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1060,0,1322
4    155242383    rs62331873    C    T    454.38    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=3.453;DB;DP=41;Dels=0.0;FS=2.906;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.172;QD=11.08;ReadPosRankSum=1.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    0/1:24,17:41:99:484,0,657
4    155242505    rs62331874    G    T    109.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.63;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,143
4    155243573    rs13109747    C    T    1432.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=S907;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155243483_155243640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1466,105,0
4    155243604    rs1352714    T    C    1331.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_AMINO_ACID_CHANGE=N897S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155243483_155243640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1364,99,0
4    155244401    rs112727159    TTTTG    T    383.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=89.6;IndelType=D;MQ=58.36;MQ0=0;QD=25.59;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_155243806_155244481;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    1/1:6,9:15:27.09:426,27,0
4    155244475    rs12500437    G    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.08;SNPEFF_AMINO_ACID_CHANGE=P1342H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155243806_155244481;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:123,9,0
4    155249118    rs2404704    C    T    119.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
4    155249289    rs111557030    G    A    960.73    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.393;DB;DP=62;Dels=0.0;FS=2.256;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=2.912;QD=15.5;ReadPosRankSum=-0.808;SNPEFF_AMINO_ACID_CHANGE=P1325L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155249245_155249344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    0/1:28,34:62:99:991,0,882
4    155250915    rs993975    G    C    169.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.238;DB;DP=27;Dels=0.0;FS=1.958;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=6.27;ReadPosRankSum=0.514;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504580    GT:AD:DP:GQ:PL    0/1:18,9:27:99:199,0,523
4    155251015    rs10517595    T    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504580    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    155252934    rs4696548    C    T    174.14    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=21.77;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504580    GT:AD:DP:GQ:PL    0/1:1,7:8:20.71:204,0,21
4    155253524    rs6843162    C    G    106.67    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.67;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504580    GT:AD:DP:GQ:PL    0/1:6,4:10:99:137,0,205
4    155256177    rs6858157    A    G    760.12    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.011;QD=19.0;ReadPosRankSum=-1.229;SNPEFF_AMINO_ACID_CHANGE=G353;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155256020_155256256;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:15,25:40:99:790,0,416
4    155256205    rs6858712    G    A    1421.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=S344L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155256020_155256256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1455,108,0
4    155278640    rs1490676    G    C    52.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    155287317    rs10005849    G    C    305.14    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=29;Dels=0.0;FS=4.058;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.411;QD=10.52;ReadPosRankSum=-0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    0/1:18,11:29:99:335,0,617
4    155287535    rs10017772    T    C    553.26    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=39;Dels=0.0;FS=7.16;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=14.19;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=H174R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155287362_155287593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:18,21:39:99:583,0,598
4    155295076    rs11721758    A    G    175.03    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.624;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.17;QD=5.15;ReadPosRankSum=-0.019;SNPEFF_AMINO_ACID_CHANGE=V153A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155295072_155295107;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357232    GT:AD:DP:GQ:PL    0/1:24,10:34:99:205,0,743
4    155305491    rs34927139    C    T    448.05    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=-0.02;QD=14.45;ReadPosRankSum=0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    0/1:14,17:31:99:478,0,452
4    155410407    rs9999285    C    G    216.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.6;DB;DP=24;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.154;QD=9.01;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339452    GT:AD:DP:GQ:PL    0/1:12,12:24:99:246,0,375
4    155410822    rs4696593    G    A    703.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=S555;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155410456_155412486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456341    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:737,57,0
4    155411065    rs7656522    T    C    565.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.33;SNPEFF_AMINO_ACID_CHANGE=L474;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155410456_155412486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456341    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:598,48,0
4    155411104    rs6536016    A    C    722.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.12;SNPEFF_AMINO_ACID_CHANGE=S461;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155410456_155412486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456341    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:756,60,0
4    155460459    rs12642770    T    C    130.14    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.412;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=6.85;ReadPosRankSum=1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504341    GT:AD:DP:GQ:PL    0/1:13,6:19:99:160,0,455
4    155507590    rs6050    T    C    1979.69    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=4.197;DB;DP=144;Dels=0.0;FS=1.346;HRun=0;HaplotypeScore=2.2429;MQ=59.68;MQ0=0;MQRankSum=0.307;QD=13.75;ReadPosRankSum=1.178;SNPEFF_AMINO_ACID_CHANGE=T331A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_155506690_155508070;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302053    GT:AD:DP:GQ:PL    0/1:72,71:144:99:2010,0,2025
4    155508627    rs2070018    G    A    262.37    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=25;Dels=0.0;FS=7.144;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.115;QD=10.49;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302053    GT:AD:DP:GQ:PL    0/1:13,12:25:99:292,0,394
4    155508897    .    G    GAGAA    228.17    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DP=17;FS=0.0;HRun=0;HaplotypeScore=65.7313;IndelType=I;MQ=61.38;MQ0=0;MQRankSum=1.92;QD=12.68;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302053    GT:AD:DP:GQ:PL    0/1:12,5:17:99:267,0,108
4    155510224    rs7656433    A    T    566.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302053    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:600,45,0
4    155525970    rs1049636    G    A    330.51    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=2.532;DB;DP=32;Dels=0.0;FS=1.758;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=10.33;ReadPosRankSum=-0.614;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393846    GT:AD:DP:GQ:PL    0/1:19,13:32:99:361,0,595
4    156135676    rs1047214    C    T    765.08    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DB;DP=68;Dels=0.0;FS=2.195;HRun=1;HaplotypeScore=0.9159;MQ=59.73;MQ0=0;MQRankSum=-0.231;QD=11.25;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=I195;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_156135044_156138228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPY2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329476    GT:AD:DP:GQ:PL    0/1:37,31:68:99:795,0,1074
4    156136027    rs2880415    C    T    1324.04    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.236;DB;DP=76;Dels=0.0;FS=0.994;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.773;QD=17.42;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=I312;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_156135044_156138228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPY2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329476    GT:AD:DP:GQ:PL    0/1:32,44:76:99:1354,0,1050
4    156273436    rs10001550    T    A    82.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424373    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:113,0,31
4    156273583    rs10034643    G    A    472.74    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.345;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.291;QD=18.18;ReadPosRankSum=0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393836    GT:AD:DP:GQ:PL    0/1:10,16:26:99:503,0,328
4    156273768    rs2305050    T    C    853.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=62;Dels=0.0;FS=10.016;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.845;QD=13.76;ReadPosRankSum=0.774;SNPEFF_AMINO_ACID_CHANGE=N577D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_156273748_156273880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000515654    GT:AD:DP:GQ:PL    0/1:31,31:62:99:883,0,934
4    156276076    rs3775248    A    G    96.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.11;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393836    GT:AD:DP:GQ:PL    0/1:2,4:6:65.94:127,0,66
4    156276096    rs3775249    G    A    139.76    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.53;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393836    GT:AD:DP:GQ:PL    0/1:4,5:9:99:170,0,122
4    156276289    rs2341894    C    T    542.01    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.746;DB;DP=64;Dels=0.0;FS=3.745;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.474;QD=8.47;ReadPosRankSum=0.021;SNPEFF_AMINO_ACID_CHANGE=V414;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_156276223_156276312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515654    GT:AD:DP:GQ:PL    0/1:42,22:64:99:572,0,1232
4    156276317    rs2880181    A    G    344.90    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.325;DB;DP=42;Dels=0.0;FS=5.111;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.654;QD=8.21;ReadPosRankSum=-0.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393836    GT:AD:DP:GQ:PL    0/1:30,12:42:99:375,0,996
4    156276433    rs2341893    C    T    63.88    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=15.97;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393836    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:94,0,28
4    156276788    rs6857158    G    T    204.36    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.135;QD=17.03;ReadPosRankSum=1.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393836    GT:AD:DP:GQ:PL    0/1:5,7:12:99:234,0,172
4    156276841    rs6834126    T    C    429.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.716;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.17;MQ0=0;MQRankSum=-0.58;QD=15.35;ReadPosRankSum=-0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393836    GT:AD:DP:GQ:PL    0/1:12,16:28:99:460,0,375
4    156283302    rs6829123    G    A    477.65    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.743;QD=11.65;ReadPosRankSum=-0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311277    GT:AD:DP:GQ:PL    0/1:20,21:41:99:508,0,593
4    156289900    rs3733390    C    T    924.75    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=79;Dels=0.0;FS=4.871;HRun=5;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.064;QD=11.71;ReadPosRankSum=1.045;SNPEFF_AMINO_ACID_CHANGE=L109;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_156289318_156289961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379248    GT:AD:DP:GQ:PL    0/1:45,34:79:99:955,0,1513
4    156289917    rs3733391    G    A    1013.88    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=73;Dels=0.0;FS=7.16;HRun=1;HaplotypeScore=0.9998;MQ=59.68;MQ0=0;MQRankSum=-0.62;QD=13.89;ReadPosRankSum=-0.879;SNPEFF_AMINO_ACID_CHANGE=R104W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_156289318_156289961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379248    GT:AD:DP:GQ:PL    0/1:35,37:73:99:1044,0,1147
4    156296821    rs1037028    T    C    50.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.11;MQ0=0;MQRankSum=-0.365;QD=5.04;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311277    GT:AD:DP:GQ:PL    0/1:6,4:10:80.40:80,0,190
4    156617994    rs2306557    G    A    479.40    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.945;DB;DP=32;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.133;QD=14.98;ReadPosRankSum=0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393832    GT:AD:DP:GQ:PL    0/1:15,17:32:99:509,0,438
4    156632391    rs11944673    A    G    1099.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_AMINO_ACID_CHANGE=K100;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_156631694_156632403;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393832    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1133,87,0
4    156634844    rs71605258    T    C    71.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=8.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512983    GT:AD:DP:GQ:PL    0/1:4,4:8:99:102,0,133
4    156643183    rs2306554    C    A    2197.11    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.208;DB;DP=138;Dels=0.0;FS=3.292;HRun=0;HaplotypeScore=1.9661;MQ=59.53;MQ0=0;MQRankSum=1.124;QD=15.92;ReadPosRankSum=2.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296518    GT:AD:DP:GQ:PL    0/1:65,73:138:99:2227,0,1853
4    156680340    rs1459845    G    T    37.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264424    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:67,0,29
4    156696105    rs34237400    G    A    2193.91    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9891;MQ=60.0;MQ0=0;MQRankSum=0.165;QD=16.25;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264424    GT:AD:DP:GQ:PL    0/1:66,69:135:99:2224,0,2020
4    156699045    rs4691087    G    A    78.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264424    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:109,0,31
4    156699054    rs6843197    G    A    79.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264424    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:109,0,30
4    156757789    rs113590442    G    GA    1443.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=9;HaplotypeScore=253.7244;IndelType=I;MQ=60.93;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537611    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1485,135,0
4    156757818    rs1399046    A    C    2283.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.62;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537611    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2317,172,0
4    156784970    rs932081    C    T    374.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537611    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:407,30,0
4    156787214    rs1399044    A    G    1009.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506181    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1042,78,0
4    156787340    rs6848883    G    A    4207.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9581;MQ=59.66;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=N13;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_156787339_156787425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537611    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4208,304,0
4    156826166    rs2137778    C    G    402.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506072    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:436,33,0
4    156829823    rs2271537    A    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503634    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    156832841    rs12502494    C    T    147.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506072    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:181,15,0
4    156839462    rs2292537    C    T    411.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536354    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:445,33,0
4    156847237    rs67417330    AG    A    453.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=86.1308;IndelType=D;MQ=58.1;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433477    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:495,39,0
4    156849353    rs11376603    C    CT    150.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=10;HaplotypeScore=13.2301;IndelType=I;MQ=56.62;MQ0=0;QD=21.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433477    GT:AD:DP:GQ:PL    1/1:1,6:7:18.05:192,18,0
4    156860391    rs7684248    T    C    74.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.59;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433477    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,138
4    158065038    rs12507409    T    C    1142.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=T277;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_158064959_158065111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264428    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1176,87,0
4    158142610    rs7675800    G    A    78.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264426    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:111,9,0
4    158143092    rs13138842    A    G    271.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512774    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:304,24,0
4    158238830    rs4302506    T    C    1043.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=H102;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_158238810_158238838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRIA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503437    GT:AD:DP:GQ:PL    1/1:0,31:31:81.25:1076,81,0
4    158242540    rs4475186    G    A    1652.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503437    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1686,120,0
4    159076679    rs6830475    C    A    99.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.5;ReadPosRankSum=-2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM198B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296530    GT:AD:DP:GQ:PL    0/1:4,4:8:99:130,0,143
4    159076826    rs6830702    C    T    1792.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=33.2;SNPEFF_AMINO_ACID_CHANGE=S354;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_159076763_159076977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM198B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296530    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1826,135,0
4    159092633    rs2881373    A    G    210.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_159091618_159092751;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM198B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296530    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
4    159158677    rs12504074    G    A    639.59    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=53;Dels=0.0;FS=6.163;HRun=0;HaplotypeScore=0.9332;MQ=59.56;MQ0=0;MQRankSum=0.87;QD=12.07;ReadPosRankSum=2.023;SNPEFF_AMINO_ACID_CHANGE=V188;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_159158677_159158795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM144;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296529    GT:AD:DP:GQ:PL    0/1:31,22:53:99:670,0,823
4    159443231    rs114037322    A    G    415.20    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.648;DB;DP=19;Dels=0.0;FS=4.337;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.718;QD=21.85;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307765    GT:AD:DP:GQ:PL    0/1:7,12:19:99:445,0,191
4    159568383    rs13111939    A    G    684.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471616    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:718,54,0
4    159569477    rs13146852    T    C    94.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471616    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
4    159601676    rs11559290    C    T    2930.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=35.74;SNPEFF_AMINO_ACID_CHANGE=T31I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_159601619_159601759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511912    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2964,220,0
4    159620035    rs7679753    A    C    365.49    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.116;QD=15.23;ReadPosRankSum=-2.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307738    GT:AD:DP:GQ:PL    0/1:11,13:24:99:395,0,366
4    159629814    rs17843966    A    C    61.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307738    GT:AD:DP:GQ:PL    0/1:2,3:5:63.54:91,0,64
4    159630817    rs8396    T    C    127.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=12.77;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307738    GT:AD:DP:GQ:PL    0/1:5,5:10:99:158,0,175
4    159631991    rs9410    G    T    1145.97    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.593;DB;DP=77;Dels=0.0;FS=2.229;HRun=2;HaplotypeScore=0.9995;MQ=59.7;MQ0=0;MQRankSum=-0.036;QD=14.88;ReadPosRankSum=1.381;SNPEFF_AMINO_ACID_CHANGE=L302I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_159631914_159632000;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPID;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307720    GT:AD:DP:GQ:PL    0/1:38,39:77:99:1176,0,1146
4    159636487    rs17843932    G    A    212.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=16;Dels=0.0;FS=2.447;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.893;QD=13.3;ReadPosRankSum=0.683;SNPEFF_AMINO_ACID_CHANGE=N238;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_159636449_159636555;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPID;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307720    GT:AD:DP:GQ:PL    0/1:8,8:16:99:243,0,240
4    159637995    rs6839534    C    A    75.57    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307720    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:106,0,29
4    159644494    rs2070630    G    C    41.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=4.58;ReadPosRankSum=-0.573;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_4_159644356_159644548;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307720    GT:AD:DP:GQ:PL    0/1:6,3:9:71.17:71,0,208
4    159644501    rs2070629    C    T    59.01    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=5.36;ReadPosRankSum=0.248;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_4_159644356_159644548;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307720    GT:AD:DP:GQ:PL    0/1:6,5:11:89:89,0,212
4    159789000    rs11726096    A    C    121.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.28;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264433    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:151,0,28
4    159881230    rs1991750    C    T    80.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434826    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
4    159881352    rs1991749    T    C    297.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=58.2;MQ0=0;MQRankSum=0.513;QD=11.45;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434826    GT:AD:DP:GQ:PL    0/1:13,13:26:99:328,0,462
4    159894045    rs661183    A    G    131.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434826    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
4    159894250    rs619128    C    T    2584.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.46;MQ0=0;QD=30.41;SNPEFF_AMINO_ACID_CHANGE=G93E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_159894231_159894463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434826    GT:AD:DP:GQ:PL    1/1:0,84:85:99:2618,199,0
4    159894305    rs662473    T    C    2226.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6001;MQ=58.77;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=S75G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_159894231_159894463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434826    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2259,184,0
4    159894311    rs62351583    A    G    929.58    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.871;DB;DP=72;Dels=0.0;FS=2.15;HRun=0;HaplotypeScore=3.8104;MQ=58.77;MQ0=0;MQRankSum=0.039;QD=12.91;ReadPosRankSum=0.028;SNPEFF_AMINO_ACID_CHANGE=Y73H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_159894231_159894463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434826    GT:AD:DP:GQ:PL    0/1:38,34:72:99:960,0,1190
4    160216882    rs35790593    T    TGA    308.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=36.3766;IndelType=I;MQ=65.08;MQ0=0;MQRankSum=0.751;QD=34.24;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264431    GT:AD:DP:GQ:PL    1/1:1,6:9:17.24:350,17,0
4    160251417    rs10692663    A    ATG    186.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=34.0325;IndelType=I;MQ=64.64;MQ0=0;MQRankSum=0.747;QD=20.71;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264431    GT:AD:DP:GQ:PL    0/1:3,6:9:9.86:225,0,10
4    160259406    rs71609037    T    G    457.72    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.835;DB;DP=24;Dels=0.0;FS=2.917;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.298;QD=19.07;ReadPosRankSum=1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264431    GT:AD:DP:GQ:PL    0/1:9,15:24:99:488,0,284
4    160263979    .    A    T    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264431    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
4    161924888    rs6536552    C    G    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC106860.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408435    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
4    161924892    rs11943762    A    G    56.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC106860.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408435    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
4    162459299    rs4691769    T    C    3137.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511170    GT:AD:DP:GQ:PL    1/1:0,95:96:99:3170,241,0
4    162680450    rs73860714    T    C    1225.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306100    GT:AD:DP:GQ:PL    1/1:0,32:32:93.29:1258,93,0
4    162697014    rs34423160    T    G    2169.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306100    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2203,162,0
4    162841814    rs77214896    T    TA    670.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=9;HaplotypeScore=70.5157;IndelType=I;MQ=59.47;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306100    GT:AD:DP:GQ:PL    1/1:3,19:23:66.07:713,66,0
4    162954926    rs60202022    A    G    78.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.7;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306100    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:108,0,65
4    164049916    rs1061075    A    C    194.93    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=16.24;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509884    GT:AD:DP:GQ:PL    0/1:5,7:12:99:225,0,172
4    164067105    rs28584666    T    A    86.81    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.47;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274054    GT:AD:DP:GQ:PL    0/1:1,5:6:25.60:117,0,26
4    164085425    rs4691896    T    C    231.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=24;Dels=0.0;FS=21.444;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.745;QD=9.66;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=I162V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_164085369_164085543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274054    GT:AD:DP:GQ:PL    0/1:16,8:24:99:262,0,478
4    164087954    rs936562    A    T    142.53    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=15.84;ReadPosRankSum=0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509232    GT:AD:DP:GQ:PL    0/1:4,5:9:68.45:173,0,68
4    164393117    rs11735477    T    A    557.37    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=42;Dels=0.0;FS=6.684;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.588;QD=13.27;ReadPosRankSum=-0.222;SNPEFF_AMINO_ACID_CHANGE=Q590H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_164392257_164395047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TKTL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280605    GT:AD:DP:GQ:PL    0/1:23,19:42:99:587,0,717
4    164415734    rs2276979    A    G    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508268    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
4    164415792    rs2276978    G    A    79.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.96;ReadPosRankSum=-0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508268    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:110,0,29
4    164415930    rs2276977    C    T    435.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.06;QD=18.13;ReadPosRankSum=0.417;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508652    GT:AD:DP:GQ:PL    0/1:9,15:24:99:465,0,260
4    164433954    rs17576308    T    C    451.59    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.207;DB;DP=37;Dels=0.0;FS=10.627;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.812;QD=12.21;ReadPosRankSum=1.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358572    GT:AD:DP:GQ:PL    0/1:20,17:37:99:482,0,510
4    164435265    rs2304802    A    C    358.72    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.357;DB;DP=43;Dels=0.0;FS=1.174;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.169;QD=8.34;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=Q65P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_164435226_164435310;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358572    GT:AD:DP:GQ:PL    0/1:25,18:43:99:389,0,781
4    164438523    rs12643109    G    A    521.81    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.832;DB;DP=32;Dels=0.0;FS=2.301;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=16.31;ReadPosRankSum=-1.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508652    GT:AD:DP:GQ:PL    0/1:15,17:32:99:552,0,462
4    164440367    rs1441722    C    T    223.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=27.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508268    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:256,21,0
4    164440581    rs1561736    T    C    366.41    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.488;DB;DP=34;Dels=0.0;FS=3.528;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.41;QD=10.78;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=I176T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_164440486_164441691;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358572    GT:AD:DP:GQ:PL    0/1:21,13:34:99:396,0,711
4    164440743    rs4362779    T    A    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503148    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
4    164466824    rs13130399    C    T    1037.92    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.535;QD=14.62;ReadPosRankSum=0.431;SNPEFF_AMINO_ACID_CHANGE=A148;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_164466748_164466895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339875    GT:AD:DP:GQ:PL    0/1:36,35:71:99:1068,0,989
4    164466970    rs11726828    C    T    876.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274056    GT:AD:DP:GQ:PL    1/1:0,23:23:69.20:910,69,0
4    164507104    rs7435076    G    T    224.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=14;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=3.9981;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=16.04;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274056    GT:AD:DP:GQ:PL    0/1:6,8:14:99:255,0,173
4    164621787    rs13105295    T    A    57.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.28;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503104    GT:AD:DP:GQ:PL    0/1:4,3:7:87.93:88,0,105
4    164621883    rs9308064    T    C    414.48    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.432;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=15.35;ReadPosRankSum=-0.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503104    GT:AD:DP:GQ:PL    0/1:14,13:27:99:444,0,474
4    164775506    rs17474369    A    T    89.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503008    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
4    165111052    rs62347975    C    T    911.21    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.71;DB;DP=70;Dels=0.0;FS=1.007;HRun=2;HaplotypeScore=0.0;MQ=46.97;MQ0=2;MQRankSum=1.113;QD=13.02;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503008    GT:AD:DP:GQ:PL    0/1:38,32:70:99:941,0,1056
4    165118652    rs2288675    C    T    1650.13    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.63;DB;DP=113;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.601;QD=14.6;ReadPosRankSum=1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503008    GT:AD:DP:GQ:PL    0/1:60,53:113:99:1680,0,1844
4    165118796    rs2288674    G    A    2515.10    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.095;DB;DP=176;Dels=0.0;FS=7.768;HRun=0;HaplotypeScore=2.877;MQ=59.21;MQ0=0;MQRankSum=-0.562;QD=14.29;ReadPosRankSum=1.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503008    GT:AD:DP:GQ:PL    0/1:80,94:176:99:2545,0,2366
4    165865209    rs4395461    G    A    445.12    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.091;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=0.296;QD=14.36;ReadPosRankSum=-3.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=NACA3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359690    GT:AD:DP:GQ:PL    0/1:15,16:31:99:475,0,513
4    166023969    rs6536891    A    C    367.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM192;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306480    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:401,30,0
4    166231868    rs28678193    A    G    2672.51    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=174;DS;Dels=0.0;FS=2.201;HRun=0;HaplotypeScore=2.6946;MQ=59.47;MQ0=0;MQRankSum=0.939;QD=15.36;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=L235;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_166231705_166231902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506761    GT:AD:DP:GQ:PL    0/1:84,90:174:99:2703,0,2699
4    166232007    .    GTT    G    159.89    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DP=30;FS=0.0;HRun=17;HaplotypeScore=271.7664;IndelType=D;MQ=55.8;MQ0=0;MQRankSum=0.317;QD=5.33;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506541    GT:AD:DP:GQ:PL    0/1:18,8:30:99:199,0,170
4    166232168    rs7681175    G    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506541    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
4    166243082    rs60759634    A    G    615.59    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.213;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=16.2;ReadPosRankSum=1.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226725    GT:AD:DP:GQ:PL    0/1:16,22:38:99:646,0,546
4    166254353    rs3775318    C    G    98.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=14.14;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SC4MOL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261507    GT:AD:DP:GQ:PL    0/1:2,5:7:67.60:129,0,68
4    166254953    rs1550271    A    C    110.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=13.86;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SC4MOL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505270    GT:AD:DP:GQ:PL    0/1:3,5:8:99:141,0,99
4    166254973    rs2118496    A    G    147.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=18.39;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SC4MOL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505270    GT:AD:DP:GQ:PL    0/1:3,5:8:98.11:177,0,98
4    166307262    rs11100610    T    C    587.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261510    GT:AD:DP:GQ:PL    1/1:0,18:18:48.11:621,48,0
4    166307302    rs12509669    G    A    442.06    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.855;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=13.81;ReadPosRankSum=2.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261510    GT:AD:DP:GQ:PL    0/1:18,14:32:99:472,0,569
4    166336529    rs4690816    T    C    504.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261510    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:538,42,0
4    166915853    rs4691229    G    A    166.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504560    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
4    166928911    rs12649793    C    A    44.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.76;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
4    166929276    rs3775321    A    G    305.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.925;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.294;QD=23.53;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    0/1:3,9:13:86.88:336,0,87
4    166935465    rs56706178    A    C    592.14    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.39;MQ0=0;MQRankSum=0.716;QD=15.58;ReadPosRankSum=1.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    0/1:20,18:38:99:622,0,665
4    166935890    rs45578631    T    A    74.19    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=8.24;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    0/1:5,4:9:99:104,0,177
4    166960363    rs17590344    G    A    32.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    0/1:2,2:4:62.96:63,0,67
4    167012241    rs33952157    GT    G    94.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=9;HaplotypeScore=121.4727;IndelType=D;MQ=54.44;MQ0=0;QD=7.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    1/1:2,11:13:31.99:137,32,0
4    167012381    rs2654492    G    A    2002.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=L848;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_167012280_167012493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2035,153,0
4    167012480    rs2646914    T    C    1329.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.87;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=A881;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_167012280_167012493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1362,105,0
4    167012506    rs2254420    A    G    985.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1018,75,0
4    167012543    rs2654493    T    C    679.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000061240    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:712,54,0
4    167656073    rs1057377    C    T    632.01    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.824;DB;DP=64;Dels=0.0;FS=2.64;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.647;QD=9.88;ReadPosRankSum=-1.053;SNPEFF_AMINO_ACID_CHANGE=*305;SNPEFF_CODON_CHANGE=tGa/tAa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_4_167655746_167656241;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535728    GT:AD:DP:GQ:PL    0/1:42,22:64:99:662,0,1340
4    167656278    rs12499704    A    C    997.86    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8656;MQ=60.0;MQ0=0;MQRankSum=0.569;QD=16.91;ReadPosRankSum=0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357154    GT:AD:DP:GQ:PL    0/1:22,36:58:99:1028,0,653
4    167658880    rs7675734    G    A    336.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357154    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:369,27,0
4    167662963    rs13146675    C    T    259.50    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=23.59;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357154    GT:AD:DP:GQ:PL    0/1:3,8:11:85.43:289,0,85
4    167675635    rs2305593    G    A    515.45    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=4.332;DB;DP=46;Dels=0.0;FS=1.965;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=11.21;ReadPosRankSum=-1.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510403    GT:AD:DP:GQ:PL    0/1:26,20:46:99:545,0,750
4    168004426    rs13117458    C    T    2862.43    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.211;DB;DP=217;Dels=0.0;FS=2.414;HRun=0;HaplotypeScore=1.5773;MQ=59.89;MQ0=0;MQRankSum=0.677;QD=13.19;ReadPosRankSum=-0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357154    GT:AD:DP:GQ:PL    0/1:112,105:217:99:2892,0,3121
4    169049312    rs56253080    A    T    499.91    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.798;DB;DP=34;Dels=0.0;FS=3.703;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.798;QD=14.7;ReadPosRankSum=1.908;SNPEFF_AMINO_ACID_CHANGE=G32;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169049235_169049316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    0/1:15,19:34:99:530,0,496
4    169060804    .    A    AT    93.65    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DP=14;FS=0.0;HRun=10;HaplotypeScore=50.1573;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.485;QD=6.69;ReadPosRankSum=-1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    0/1:8,5:14:99:133,0,155
4    169083694    rs6836994    A    C    877.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=M71L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169083679_169083792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:911,66,0
4    169085593    rs2292734    C    T    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
4    169086441    rs4405979    A    G    1033.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.98;MQ0=0;QD=26.49;SNPEFF_AMINO_ACID_CHANGE=S148;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169086398_169086477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    1/1:0,39:39:81.25:1066,81,0
4    169086540    rs72275899    CAA    C    39.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=17;HaplotypeScore=88.0397;IndelType=D;MQ=47.49;MQ0=0;QD=3.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    1/1:4,8:13:13.58:82,14,0
4    169098984    rs10024092    G    T    1173.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.497;DB;DP=84;Dels=0.0;FS=8.991;HRun=1;HaplotypeScore=2.8146;MQ=59.45;MQ0=0;MQRankSum=1.042;QD=13.97;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    0/1:42,42:84:99:1203,0,1352
4    169102692    rs28721475    T    C    274.87    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.267;QD=19.63;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503003    GT:AD:DP:GQ:PL    0/1:5,9:14:99:305,0,161
4    169105563    rs576690    A    G    377.68    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=15.74;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    0/1:11,13:24:99:408,0,386
4    169108398    rs17610904    A    G    86.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359299    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
4    169141537    rs17053804    C    T    351.52    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=23.43;ReadPosRankSum=1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:4,11:15:99:382,0,118
4    169143035    rs17611179    G    A    499.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.104;DB;DP=36;Dels=0.0;FS=6.113;HRun=6;HaplotypeScore=0.9789;MQ=58.83;MQ0=0;MQRankSum=0.237;QD=13.86;ReadPosRankSum=1.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:18,18:36:99:529,0,577
4    169158471    rs6552559    T    G    90.81    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=6.99;ReadPosRankSum=-0.077;SNPEFF_AMINO_ACID_CHANGE=G1459;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169158437_169158578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:9,4:13:99:121,0,286
4    169158489    rs3828560    G    C    175.15    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.754;DB;DP=17;Dels=0.0;FS=6.245;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.156;QD=10.3;ReadPosRankSum=-1.759;SNPEFF_AMINO_ACID_CHANGE=V1453;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169158437_169158578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:11,6:17:99:205,0,301
4    169158531    rs3805396    T    C    310.70    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.342;QD=17.26;ReadPosRankSum=-0.342;SNPEFF_AMINO_ACID_CHANGE=V1439;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169158437_169158578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:8,10:18:99:341,0,193
4    169167431    rs12510946    C    T    104.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-1.38;QD=17.39;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:2,4:6:65.41:134,0,65
4    169169627    rs12500298    G    A    42.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505393    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
4    169172098    rs17053841    C    T    484.14    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=43;Dels=0.0;FS=2.971;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.563;QD=11.26;ReadPosRankSum=-0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505393    GT:AD:DP:GQ:PL    0/1:25,18:43:99:514,0,731
4    169173391    rs719898    G    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505393    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    169176660    rs17611381    T    G    74.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
4    169181708    rs1671316    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    169183789    rs6552581    A    G    2399.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.914;QD=33.32;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2432,142,0
4    169188780    rs576619    T    C    571.61    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.176;QD=9.07;ReadPosRankSum=-0.681;SNPEFF_AMINO_ACID_CHANGE=I90V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169188733_169188842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537338    GT:AD:DP:GQ:PL    0/1:38,25:63:99:602,0,1145
4    169188927    rs575601    C    T    1270.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=58.78;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1303,105,0
4    169189151    rs72693142    A    G    938.92    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=2.699;DB;DP=66;Dels=0.0;FS=3.42;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-1.59;QD=14.23;ReadPosRankSum=-1.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:29,37:66:99:969,0,763
4    169190129    rs34466920    CA    C    849.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.5;DB;DP=66;FS=0.0;HRun=13;HaplotypeScore=289.8674;IndelType=D;MQ=56.92;MQ0=0;MQRankSum=-0.38;QD=12.87;ReadPosRankSum=0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:19,44:66:60.59:891,61,0
4    169194984    .    T    TA    374.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.592;DP=26;FS=0.0;HRun=6;HaplotypeScore=56.8607;IndelType=I;MQ=59.95;MQ0=0;MQRankSum=-0.579;QD=14.4;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:13,13:26:99:413,0,265
4    169197063    .    TAA    T    75.32    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DP=13;FS=0.0;HRun=16;HaplotypeScore=97.2914;IndelType=D;MQ=52.45;MQ0=0;MQRankSum=0.259;QD=5.79;ReadPosRankSum=1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:5,6:13:99:114,0,133
4    169197297    rs550625    C    T    546.33    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.272;DB;DP=42;Dels=0.0;FS=3.086;HRun=0;HaplotypeScore=1.9924;MQ=58.89;MQ0=0;MQRankSum=0.919;QD=13.01;ReadPosRankSum=-0.818;SNPEFF_AMINO_ACID_CHANGE=V672M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169197166_169197332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:22,20:42:99:576,0,626
4    169201932    rs72693157    T    C    34.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.74;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:4,2:6:64.40:64,0,144
4    169204372    rs11735578    A    G    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
4    169204421    rs524722    A    C    132.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
4    169206769    rs823282    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    169208334    rs72693161    C    T    654.98    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=12.13;ReadPosRankSum=-0.902;SNPEFF_AMINO_ACID_CHANGE=D402N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169208199_169208354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:29,25:54:99:685,0,957
4    169209583    rs9995999    G    T    664.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:698,51,0
4    169212748    rs28403868    G    A    147.83    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=18.48;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393743    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,99
4    169279092    rs496945    C    T    196.37    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=17.85;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513103    GT:AD:DP:GQ:PL    0/1:3,8:11:53.55:226,0,54
4    169279170    rs497151    A    G    499.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.27;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8653;MQ=59.25;MQ0=0;MQRankSum=0.659;QD=16.11;ReadPosRankSum=-0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513103    GT:AD:DP:GQ:PL    0/1:12,18:31:99:529,0,352
4    169282112    rs2684346    C    T    31.33    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.22;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:4,2:6:61.32:61,0,108
4    169282187    rs3749494    G    A    157.69    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=9.86;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:10,6:16:99:188,0,346
4    169282232    rs2684347    G    A    250.20    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=28;Dels=0.0;FS=2.733;HRun=3;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.312;QD=8.94;ReadPosRankSum=1.558;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:18,10:28:99:280,0,642
4    169292639    rs116173680    T    C    30.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.32;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:5,2:7:60.22:60,0,183
4    169292759    rs6829368    T    C    1058.78    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.345;DB;DP=76;Dels=0.0;FS=4.549;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=0.79;QD=13.93;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:39,37:76:99:1089,0,1296
4    169296472    rs34524049    TAACC    T    854.61    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=4.029;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=147.7445;IndelType=D;MQ=52.86;MQ0=0;MQRankSum=-1.528;QD=27.57;ReadPosRankSum=-2.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:14,17:31:99:894,0,1058
4    169296802    rs1489227    C    T    200.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=14.29;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:7,7:14:99:230,0,237
4    169296873    rs1489226    T    C    42.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
4    169299676    rs10517990    T    G    515.85    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.634;DB;DP=35;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=14.74;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:17,18:35:99:546,0,612
4    169300451    rs11734310    G    C    517.29    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=4.064;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.243;MQ=59.34;MQ0=0;MQRankSum=3.203;QD=8.21;ReadPosRankSum=2.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:41,20:63:99:547,0,1288
4    169301044    rs3749497    A    G    347.36    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.231;DB;DP=23;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.277;QD=15.1;ReadPosRankSum=0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:12,11:23:99:377,0,404
4    169301059    rs1489232    T    C    296.26    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=17.43;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:7,10:17:99:326,0,228
4    169301077    rs3749498    G    T    295.21    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=19.68;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:6,9:15:99:325,0,204
4    169305649    rs902004    A    G    107.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.922;QD=13.47;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,144
4    169312800    rs35620253    GA    G    74.69    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=37;FS=0.0;HRun=15;HaplotypeScore=317.3083;IndelType=D;MQ=53.37;MQ0=0;MQRankSum=0.4;QD=2.02;ReadPosRankSum=0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503190    GT:AD:DP:GQ:PL    0/1:28,7:37:99:114,0,124
4    169315487    rs17612130    C    T    97.51    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.13;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503190    GT:AD:DP:GQ:PL    0/1:7,4:12:99:128,0,251
4    169315533    rs3828493    T    C    307.35    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.367;QD=15.37;ReadPosRankSum=0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503190    GT:AD:DP:GQ:PL    0/1:9,10:20:99:337,0,318
4    169315571    rs35333219    TA    T    1269.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=2;HaplotypeScore=124.6427;IndelType=D;MQ=60.28;MQ0=0;QD=37.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503190    GT:AD:DP:GQ:PL    1/1:1,33:34:99:1312,102,0
4    169315760    rs3749499    C    A    3134.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.41;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=E1222D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169315616_169315768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3168,238,0
4    169315867    rs17612144    A    G    502.78    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.2;MQ0=0;MQRankSum=-0.987;QD=17.34;ReadPosRankSum=1.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503190    GT:AD:DP:GQ:PL    0/1:13,16:29:99:533,0,444
4    169322163    rs140432491    CTA    C    972.75    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=6.228;DB;DP=61;FS=6.966;HRun=0;HaplotypeScore=209.2075;IndelType=D;MQ=60.18;MQ0=0;MQRankSum=1.574;QD=15.95;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:36,25:61:99:1012,0,1791
4    169322284    rs11940436    G    A    37.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.47;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,112
4    169322338    rs11728183    T    C    110.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:143,12,0
4    169325124    rs62334117    G    A    1447.61    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=74;Dels=0.0;FS=0.982;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.711;QD=19.56;ReadPosRankSum=0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:26,48:74:99:1478,0,801
4    169325282    rs59361424    TA    T    114.77    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=0.116;DB;DP=30;FS=0.0;HRun=13;HaplotypeScore=128.6586;IndelType=D;MQ=58.82;MQ0=0;MQRankSum=-0.753;QD=3.83;ReadPosRankSum=-0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:19,10:30:99:154,0,308
4    169327191    rs3762856    C    T    1495.63    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.683;DB;DP=102;Dels=0.0;FS=16.133;HRun=2;HaplotypeScore=1.9312;MQ=59.77;MQ0=0;MQRankSum=-1.192;QD=14.66;ReadPosRankSum=-0.04;SNPEFF_AMINO_ACID_CHANGE=K1041;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169327101_169327229;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:49,53:102:99:1526,0,1647
4    169327905    rs62334119    G    T    156.95    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.337;QD=9.23;ReadPosRankSum=-0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:8,9:17:99:187,0,280
4    169336401    rs4692660    G    A    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504793    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:70,0,69
4    169336662    rs4692661    T    C    2189.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=Y655C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169336559_169336668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505863    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2223,163,0
4    169340431    rs2018241    A    C    242.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.978;DB;DP=32;Dels=0.0;FS=4.715;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.487;QD=7.58;ReadPosRankSum=-2.783;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:20,12:32:99:273,0,675
4    169341435    rs2130145    A    G    2923.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=58.46;MQ0=0;QD=32.13;SNPEFF_AMINO_ACID_CHANGE=C559R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169341412_169341531;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505863    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2957,232,0
4    169341537    rs62334143    T    A    679.12    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=62;Dels=0.0;FS=2.272;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;MQRankSum=-0.66;QD=10.95;ReadPosRankSum=-1.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:37,25:62:99:709,0,1202
4    169341614    rs36020942    TACAC    T    285.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.159;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=143.0566;IndelType=D;MQ=52.9;MQ0=0;MQRankSum=0.869;QD=14.3;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    1/1:11,8:20:19.05:328,19,0
4    169343044    rs61740705    A    G    1911.82    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=2.412;DB;DP=157;Dels=0.0;FS=5.705;HRun=0;HaplotypeScore=2.4918;MQ=59.85;MQ0=0;MQRankSum=-0.223;QD=12.18;ReadPosRankSum=0.618;SNPEFF_AMINO_ACID_CHANGE=V482A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169342911_169343060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505863    GT:AD:DP:GQ:PL    0/1:92,65:157:99:1942,0,2571
4    169345005    rs62334147    T    C    531.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.242;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.057;QD=16.61;ReadPosRankSum=0.999;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:16,16:32:99:562,0,545
4    169348039    rs17612466    C    T    183.79    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=20.42;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:2,7:9:59.91:214,0,60
4    169348476    rs74346802    G    A    2870.58    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.251;DB;DP=229;Dels=0.0;FS=12.339;HRun=0;HaplotypeScore=1.748;MQ=59.8;MQ0=0;MQRankSum=0.33;QD=12.54;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:125,104:229:99:2901,0,3450
4    169351919    rs4692931    C    T    42.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
4    169362297    rs12504779    C    G    89.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.63;MQ0=0;MQRankSum=-0.421;QD=11.19;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:4,4:8:99:120,0,140
4    169362557    rs13151700    C    G    2267.16    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=5.594;DB;DP=188;Dels=0.0;FS=6.613;HRun=1;HaplotypeScore=2.4875;MQ=59.63;MQ0=0;MQRankSum=-1.026;QD=12.06;ReadPosRankSum=0.475;SNPEFF_AMINO_ACID_CHANGE=V137L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169362488_169362643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505863    GT:AD:DP:GQ:PL    0/1:110,76:188:99:2297,0,3077
4    169369820    rs2712113    T    A    1387.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.59;SNPEFF_AMINO_ACID_CHANGE=I369;SNPEFF_CODON_CHANGE=atA/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169369789_169369930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1421,105,0
4    169369853    rs2712114    A    T    1818.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=36.37;SNPEFF_AMINO_ACID_CHANGE=S358;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169369789_169369930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1851,135,0
4    169369920    rs12507582    C    T    540.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.54;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.68;MQ0=0;MQRankSum=-0.372;QD=9.32;ReadPosRankSum=0.305;SNPEFF_AMINO_ACID_CHANGE=C336Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169369789_169369930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:35,21:57:99:570,0,1120
4    169374487    rs2634953    A    G    2415    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    1/1:1,64:65:99:2448,181,0
4    169376962    rs2712142    C    T    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
4    169382663    rs1027123    A    G    77.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505696    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
4    169382822    rs5863935    A    AC    660.51    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.996;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=103.6566;IndelType=I;MQ=60.44;MQ0=0;MQRankSum=0.696;QD=13.48;ReadPosRankSum=0.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505696    GT:AD:DP:GQ:PL    0/1:30,19:49:99:700,0,1063
4    169382991    rs17612630    C    A    1015.56    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=5.246;DB;DP=86;Dels=0.0;FS=0.839;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=11.81;ReadPosRankSum=1.103;SNPEFF_AMINO_ACID_CHANGE=T155;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169382850_169383191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260184    GT:AD:DP:GQ:PL    0/1:51,35:86:99:1046,0,1517
4    169392702    rs12504234    A    G    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505150    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
4    169392803    rs7670367    T    C    1062.08    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=3.099;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.6;MQ0=0;MQRankSum=0.264;QD=18.31;ReadPosRankSum=1.121;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505150    GT:AD:DP:GQ:PL    0/1:26,31:58:99:1092,0,842
4    169393179    rs12505232    T    G    214.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505150    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:248,21,0
4    169393595    rs13149639    A    G    2446.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505150    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2479,202,0
4    169393972    rs113626526    G    GA    1160.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=6;HaplotypeScore=76.5739;IndelType=I;MQ=60.6;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX60L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505150    GT:AD:DP:GQ:PL    1/1:3,33:36:96.31:1202,96,0
4    169589214    rs2723705    T    C    332.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.286;QD=22.14;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261509    GT:AD:DP:GQ:PL    0/1:5,10:15:99:362,0,162
4    169812249    rs77875308    C    T    380.09    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.906;QD=11.52;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261509    GT:AD:DP:GQ:PL    0/1:18,15:33:99:410,0,581
4    169812313    rs6827082    T    C    139.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.94;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261509    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,167
4    169835048    rs1532651    C    G    906.42    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.308;DB;DP=65;Dels=0.0;FS=2.235;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.424;QD=13.94;ReadPosRankSum=-2.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261509    GT:AD:DP:GQ:PL    0/1:33,32:65:99:936,0,977
4    169835134    rs1059444    A    G    957.22    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.911;DB;DP=76;Dels=0.0;FS=1.974;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.483;QD=12.6;ReadPosRankSum=-0.387;SNPEFF_AMINO_ACID_CHANGE=R389;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169835078_169835172;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507735    GT:AD:DP:GQ:PL    0/1:39,37:76:99:987,0,1135
4    169835324    rs4324524    T    G    101.29    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.26;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393726    GT:AD:DP:GQ:PL    0/1:1,4:5:24.99:131,0,25
4    169842976    rs17615157    T    C    97.47    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=6.96;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261509    GT:AD:DP:GQ:PL    0/1:9,5:14:99:127,0,307
4    169846255    rs3733656    T    C    572.87    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.952;DB;DP=42;Dels=0.0;FS=4.658;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=13.64;ReadPosRankSum=-1.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261509    GT:AD:DP:GQ:PL    0/1:22,20:42:99:603,0,793
4    169846359    rs72217369    GCT    G    1118.53    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=6.7;DB;DP=102;FS=4.269;HRun=0;HaplotypeScore=329.4682;IndelType=D;MQ=59.95;MQ0=0;MQRankSum=0.23;QD=10.97;ReadPosRankSum=0.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261509    GT:AD:DP:GQ:PL    0/1:64,38:102:99:1158,0,2379
4    169928655    rs1870305    G    A    134.80    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.85;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507752    GT:AD:DP:GQ:PL    0/1:3,5:8:99:165,0,100
4    169928842    rs2877380    G    T    617.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.42;DB;DP=40;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.284;QD=15.45;ReadPosRankSum=0.23;SNPEFF_AMINO_ACID_CHANGE=L67M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_169928787_169928907;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CBR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504561    GT:AD:DP:GQ:PL    0/1:20,20:40:99:648,0,608
4    169931268    rs28371817    G    A    1237.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=55.45;MQ0=0;QD=29.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504561    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1270,102,0
4    169931274    rs2279038    G    A    381.23    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=55.72;MQ0=0;MQRankSum=0.513;QD=9.78;ReadPosRankSum=-1.572;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504561    GT:AD:DP:GQ:PL    0/1:22,17:39:99:411,0,644
4    169931288    rs2279039    T    C    213.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=32;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.6316;MQ=54.74;MQ0=0;MQRankSum=1.505;QD=6.68;ReadPosRankSum=-1.308;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CBR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504561    GT:AD:DP:GQ:PL    0/1:16,16:32:99:244,0,467
4    170017508    rs2706747    T    C    132.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3RF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284637    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
4    170017860    rs1471172    G    A    1405.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3RF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284637    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1438,105,0
4    170315496    rs4692721    C    T    173.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
4    170346090    rs4692723    C    T    617.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:651,48,0
4    170354476    rs13151656    G    C    213.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
4    170354836    rs7680152    C    T    2461.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.445;QD=35.16;ReadPosRankSum=0.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:1,69:70:99:2494,167,0
4    170354873    rs13139925    T    C    1311.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.559;QD=32.79;ReadPosRankSum=0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:1,39:40:62.34:1345,62,0
4    170398843    rs6857243    T    C    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
4    170428351    .    TG    T    589.74    PASS    AC=2;AF=1.00;AN=2;DP=24;FS=0.0;HRun=3;HaplotypeScore=247.1725;IndelType=D;MQ=45.89;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:18,6:24:62.84:632,63,0
4    170476699    rs76760515    T    TCA    780.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=34.719;IndelType=I;MQ=62.13;MQ0=0;QD=52.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:823,45,0
4    170483153    rs62952760    T    A    394.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.667;DB;DP=26;Dels=0.0;FS=4.771;HRun=11;HaplotypeScore=7.4745;MQ=55.4;MQ0=0;MQRankSum=1.333;QD=15.17;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:1,25:26:45.05:427,45,0
4    170522973    rs4692570    C    T    111.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439128    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:144,12,0
4    170601172    rs33965812    A    G    218.99    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.162;DB;DP=31;Dels=0.0;FS=5.416;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;MQRankSum=0.021;QD=7.06;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347613    GT:AD:DP:GQ:PL    0/1:21,10:31:99:249,0,732
4    170616918    rs2062609    G    A    515.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347613    GT:AD:DP:GQ:PL    1/1:0,17:17:42.11:549,42,0
4    170628474    rs1566522    A    G    883.67    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=3.291;DB;DP=55;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.951;QD=16.07;ReadPosRankSum=0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538301    GT:AD:DP:GQ:PL    0/1:27,28:55:99:914,0,886
4    170628524    rs9996636    A    G    499.72    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.403;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.889;QD=15.62;ReadPosRankSum=0.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538301    GT:AD:DP:GQ:PL    0/1:17,15:32:99:530,0,552
4    170650606    rs79999739    CAGA    C    644.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=67.1931;IndelType=D;MQ=49.17;MQ0=0;QD=46.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393381    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:686,42,0
4    170663235    rs1047642    C    T    2407.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8407;MQ=59.68;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=R174K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_170663108_170663258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393381    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2440,181,0
4    170663321    rs6849004    C    G    1577.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.48;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393381    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1610,117,0
4    170669824    rs35744315    C    A    1068.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=35.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506125    GT:AD:DP:GQ:PL    1/1:0,30:30:87.25:1101,87,0
4    170678993    rs11540095    T    C    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_AMINO_ACID_CHANGE=G12;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_170678981_170679104;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393381    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
4    170994554    rs112522553    GT    G    50.28    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=16;FS=0.0;HRun=12;HaplotypeScore=68.9219;IndelType=D;MQ=55.82;MQ0=0;MQRankSum=1.159;QD=3.14;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337664    GT:AD:DP:GQ:PL    0/1:8,7:16:78.89:89,0,79
4    170999860    rs2622068    G    A    64.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AADAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337664    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:95,0,31
4    171525788    rs1848304    G    A    378.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=34.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSP90AA6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506634    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:411,30,0
4    171526012    rs398179    C    T    2961.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.8907;MQ=59.75;MQ0=0;QD=32.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSP90AA6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325407    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2995,229,0
4    171526399    rs111860566    G    A    475.68    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.891;DB;DP=30;Dels=0.0;FS=5.469;HRun=0;HaplotypeScore=0.5784;MQ=59.23;MQ0=0;MQRankSum=0.852;QD=15.86;ReadPosRankSum=-0.229;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSP90AA6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506634    GT:AD:DP:GQ:PL    0/1:14,16:30:99:506,0,464
4    172735897    rs3796654    C    G    452.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DB;DP=21;Dels=0.0;FS=5.935;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.455;QD=21.57;ReadPosRankSum=-1.455;SNPEFF_AMINO_ACID_CHANGE=Q56E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_172735563_172736730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511251    GT:AD:DP:GQ:PL    0/1:7,14:21:99:483,0,219
4    173232679    rs2136033    A    G    715.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404275    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:748,57,0
4    173232805    rs9312524    G    A    842.68    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=64;Dels=0.0;FS=1.11;HRun=1;HaplotypeScore=1.8245;MQ=59.64;MQ0=0;MQRankSum=0.162;QD=13.17;ReadPosRankSum=0.256;SNPEFF_AMINO_ACID_CHANGE=E79;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_173232765_173232903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508122    GT:AD:DP:GQ:PL    0/1:35,29:64:99:873,0,1196
4    173232944    rs168011    G    T    1259.99    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.366;DB;DP=110;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=-0.995;QD=11.45;ReadPosRankSum=-1.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404275    GT:AD:DP:GQ:PL    0/1:51,59:110:99:1290,0,1617
4    173873170    rs11322401    TG    T    1134.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=1;HaplotypeScore=108.956;IndelType=D;MQ=59.72;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506823    GT:AD:DP:GQ:PL    1/1:1,31:32:87.02:1177,87,0
4    173930479    rs4696042    A    G    914.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.873;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506823    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:947,69,0
4    174090004    rs3733477    G    A    194.87    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=26;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=0.9665;MQ=58.2;MQ0=0;MQRankSum=-2.045;QD=7.49;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=G6;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_174089904_174090112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265000    GT:AD:DP:GQ:PL    0/1:15,11:26:99:225,0,337
4    174099149    rs28709762    T    C    136.17    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=19;Dels=0.0;FS=2.48;HRun=2;HaplotypeScore=5.4643;MQ=48.91;MQ0=0;MQRankSum=-0.318;QD=7.17;ReadPosRankSum=1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265000    GT:AD:DP:GQ:PL    0/1:10,9:19:99:166,0,265
4    174099203    rs60869480    T    TGCGCGCGC    578.04    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=167.5073;IndelType=I;MQ=48.46;MQ0=0;MQRankSum=2.289;QD=34.0;ReadPosRankSum=0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265000    GT:AD:DP:GQ:PL    0/1:11,6:17:99:617,0,504
4    174294990    rs72531602    A    AT    943.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=4;HaplotypeScore=49.6131;IndelType=I;MQ=60.42;MQ0=0;QD=36.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SAP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504618    GT:AD:DP:GQ:PL    1/1:2,24:26:72.24:985,72,0
4    174537063    rs4413383    G    A    527.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.23;MQ0=2;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MORF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434007    GT:AD:DP:GQ:PL    1/1:0,22:22:51.08:561,51,0
4    174537221    rs11726970    T    C    2311.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.782;MQ=47.05;MQ0=7;QD=30.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MORF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434007    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2344,193,0
4    174537356    rs34402795    T    A    4628.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.61;MQ0=0;QD=35.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MORF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434007    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4629,349,0
4    174537471    rs13103221    G    A    6199.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7231;MQ=58.69;MQ0=0;QD=35.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MORF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434007    GT:AD:DP:GQ:PL    1/1:0,174:174:99:6200,457,0
4    174537658    rs62342044    C    T    2000.86    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.393;DB;DP=164;Dels=0.0;FS=4.871;HRun=3;HaplotypeScore=2.5447;MQ=59.86;MQ0=0;MQRankSum=0.359;QD=12.2;ReadPosRankSum=0.935;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MORF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434007    GT:AD:DP:GQ:PL    0/1:93,71:164:99:2031,0,3172
4    174537972    rs112842531    T    C    174.57    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=20;Dels=0.0;FS=9.139;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.158;QD=8.73;ReadPosRankSum=-0.396;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MORF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447135    GT:AD:DP:GQ:PL    0/1:13,7:20:99:205,0,454
4    175158868    rs10026413    C    T    252.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513696    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
4    175443156    rs1050145    C    T    1379.79    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.48;DB;DP=106;Dels=0.0;FS=11.386;HRun=1;HaplotypeScore=0.5784;MQ=59.39;MQ0=0;MQRankSum=0.276;QD=13.02;ReadPosRankSum=1.863;SNPEFF_AMINO_ACID_CHANGE=Q52;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_175443095_175443218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPGD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296521    GT:AD:DP:GQ:PL    0/1:60,45:106:99:1410,0,1856
4    175565245    rs4235212    T    C    648.73    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.161;DB;DP=48;Dels=0.0;FS=9.402;HRun=0;HaplotypeScore=2.8447;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=13.52;ReadPosRankSum=0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    0/1:23,25:48:99:679,0,699
4    175580077    rs12509016    A    G    251.74    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.299;QD=13.99;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    0/1:8,10:18:99:282,0,280
4    175580119    rs6553802    T    C    508.43    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=38;Dels=0.0;FS=2.174;HRun=1;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=1.856;QD=13.38;ReadPosRankSum=1.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    0/1:20,18:38:99:538,0,712
4    175580191    rs4365704    G    A    725.67    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=2.258;DB;DP=77;Dels=0.0;FS=0.949;HRun=0;HaplotypeScore=2.2312;MQ=59.46;MQ0=0;MQRankSum=1.607;QD=9.42;ReadPosRankSum=0.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    0/1:50,27:77:99:756,0,1359
4    175598029    rs6811808    T    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    175598033    rs6828475    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    175598334    rs6812439    T    C    1328.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=29.53;SNPEFF_AMINO_ACID_CHANGE=S274;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_175598229_175598443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1362,105,0
4    175603758    rs11939284    C    G    133.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
4    175604256    rs35659583    G    A    117.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
4    175649861    rs1872548    T    G    931.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6515;MQ=58.39;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    1/1:0,28:29:75.23:964,75,0
4    175649873    rs3834804    GA    G    184.32    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.858;DB;DP=28;FS=2.156;HRun=11;HaplotypeScore=190.2123;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=0.491;QD=6.58;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    0/1:16,12:28:99:223,0,308
4    175649941    rs10000456    T    C    89.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=9.93;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    0/1:5,4:9:99:119,0,175
4    175688274    rs143704640    TAC    T    144.22    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.339;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=117.1649;IndelType=D;MQ=58.13;MQ0=0;MQRankSum=-1.154;QD=5.77;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274093    GT:AD:DP:GQ:PL    0/1:12,7:25:99:183,0,162
4    176670362    rs34314997    AG    A    839.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=62.2501;IndelType=D;MQ=61.4;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPM6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280187    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:881,69,0
4    176733447    .    TGGG    T    909.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.714;DP=64;FS=0.0;HRun=5;HaplotypeScore=798.4695;IndelType=D;MQ=41.92;MQ0=0;MQRankSum=1.325;QD=14.22;ReadPosRankSum=0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPM6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280187    GT:AD:DP:GQ:PL    1/1:52,6:64:93.70:952,94,0
4    177062969    rs62339427    A    G    94.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280190    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
4    177073026    rs4690661    G    A    1201.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=A790T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_177072963_177073118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393643    GT:AD:DP:GQ:PL    1/1:0,37:37:93.25:1234,93,0
4    177087322    rs4388031    C    T    914.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280190    GT:AD:DP:GQ:PL    1/1:0,28:28:69.23:948,69,0
4    177093505    rs4538426    T    G    1338.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280190    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1371,105,0
4    177093836    rs4444774    C    T    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280190    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
4    177095908    rs4690665    A    G    1127.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280190    GT:AD:DP:GQ:PL    1/1:0,29:29:84.28:1160,84,0
4    177096081    rs4234875    A    G    79.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280190    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
4    177098285    rs17625943    G    A    1176.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=A1176T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_177098209_177098307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508596    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1209,90,0
4    177100515    rs75391699    GT    G    561.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=9;HaplotypeScore=61.429;IndelType=D;MQ=60.98;MQ0=0;QD=25.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508773    GT:AD:DP:GQ:PL    1/1:0,22:22:66.04:604,66,0
4    177113764    rs6857056    A    C    953.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508699    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:987,78,0
4    177113836    rs6832177    C    T    1333.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_AMINO_ACID_CHANGE=A210;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_177113778_177113998;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280191    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1366,99,0
4    177114889    rs6820936    T    C    772.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280191    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:806,60,0
4    177115028    rs6821182    T    G    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_177114604_177116028;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515234    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
4    177116463    rs994252    C    G    200.87    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=26;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=1.8268;MQ=59.04;MQ0=0;MQRankSum=-1.552;QD=7.73;ReadPosRankSum=-0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280191    GT:AD:DP:GQ:PL    0/1:15,11:26:99:231,0,359
4    177116779    rs4565028    T    C    177.22    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.141;QD=13.63;ReadPosRankSum=0.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508699    GT:AD:DP:GQ:PL    0/1:5,8:13:99:207,0,164
4    177116909    rs2170577    G    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280191    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    177136512    rs922849    G    A    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512254    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
4    177137988    rs6827525    C    T    2235.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=R228;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_177137969_177138160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512254    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2268,172,0
4    177142776    rs10032098    C    A    755.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510578    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:788,60,0
4    177143664    rs6553937    C    G    384.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510578    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:417,30,0
4    177241136    rs2305506    C    T    487.57    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.49;DB;DP=52;Dels=0.0;FS=2.2;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.111;QD=9.38;ReadPosRankSum=-1.882;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_177241115_177241370;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPCS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503362    GT:AD:DP:GQ:PL    0/1:23,29:52:99:518,0,552
4    177605081    rs5864401    CTCA    C    1771.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=169.2434;IndelType=D;MQ=59.0;MQ0=0;QD=46.62;SNPEFF_AMINO_ACID_CHANGE=MS419S;SNPEFF_CODON_CHANGE=atgagc/agc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_4_177604689_177605194;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280193    GT:AD:DP:GQ:PL    1/1:1,37:38:99:1813,111,0
4    177608234    rs56032564    T    C    332.49    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=10.39;ReadPosRankSum=-0.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507638    GT:AD:DP:GQ:PL    0/1:19,13:32:99:362,0,694
4    177608775    rs4604006    T    C    84.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507638    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
4    177608875    rs4529000    A    C    546.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507638    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:579,42,0
4    177609203    rs13136065    G    A    164.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507638    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
4    177609259    rs2877962    C    T    158.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507638    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
4    177609264    rs2333495    C    T    153.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507638    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
4    177650614    rs3836595    T    TA    378.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=24.0614;IndelType=I;MQ=60.98;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280193    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:420,30,0
4    178256759    rs71597498    CA    C    946.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=10;HaplotypeScore=106.6084;IndelType=D;MQ=61.37;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:0,39:39:99:989,114,0
4    178257516    rs2271102    G    A    1023.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1057,78,0
4    178262454    rs6846091    C    G    156.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=15.67;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    0/1:4,6:10:99:187,0,139
4    178262613    rs35370036    GT    G    151.94    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.224;DB;DP=42;FS=5.649;HRun=14;HaplotypeScore=222.6576;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=-0.52;QD=3.62;ReadPosRankSum=1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    0/1:27,15:42:99:191,0,327
4    178262683    rs17676249    T    C    350.22    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.859;DB;DP=42;Dels=0.0;FS=1.271;HRun=2;HaplotypeScore=0.7887;MQ=57.2;MQ0=0;MQRankSum=0.044;QD=8.34;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=P252;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_178262630_178262796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    0/1:26,16:42:99:380,0,745
4    178262811    rs28618113    T    C    260.65    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2702;MQ=56.06;MQ0=0;MQRankSum=-1.088;QD=11.33;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    0/1:12,11:23:99:291,0,393
4    178272748    rs1054753    G    A    1845.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.274;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.6;MQ0=0;MQRankSum=1.55;QD=32.38;ReadPosRankSum=0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:1,56:57:99:1878,103,0
4    178272846    rs1054754    C    T    284.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
4    178274565    rs113130668    A    G    1321.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.12;SNPEFF_AMINO_ACID_CHANGE=R381;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_178274462_178274882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1355,111,0
4    178274694    rs10007075    T    G    1181.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.67;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=V424;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_178274462_178274882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1215,93,0
4    178274750    rs13112358    C    T    1598.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.47;MQ0=0;QD=34.0;SNPEFF_AMINO_ACID_CHANGE=P443L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_178274462_178274882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1631,123,0
4    178274835    rs13112390    A    C    2225.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.69;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=Q471H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_178274462_178274882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2258,174,0
4    178281754    rs1876268    G    A    1788.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_AMINO_ACID_CHANGE=G520R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_178281657_178281831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264596    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1821,138,0
4    178353046    rs3805167    G    C    38.57    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=2.57;ReadPosRankSum=-0.979;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502310    GT:AD:DP:GQ:PL    0/1:11,4:15:68.56:69,0,415
4    178354667    rs2279931    C    A    58.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=11.73;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506853    GT:AD:DP:GQ:PL    0/1:2,3:5:65.61:89,0,66
4    178354680    rs10031429    A    T    31.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=7.85;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506853    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:61,0,71
4    178355668    rs4690521    C    G    1924.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510955    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1958,147,0
4    178359960    rs2228119    G    C    883.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=31.55;SNPEFF_AMINO_ACID_CHANGE=T149S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_178359899_178360011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264595    GT:AD:DP:GQ:PL    1/1:0,28:28:66.22:916,66,0
4    178361414    rs34241758    A    C    2928.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264595    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2962,223,0
4    178363378    rs11131799    G    A    528.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264595    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:562,42,0
4    178465553    rs143127942    GT    G    835.10    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=4.648;DB;DP=59;FS=1.059;HRun=3;HaplotypeScore=151.697;IndelType=D;MQ=60.55;MQ0=0;MQRankSum=-0.464;QD=14.15;ReadPosRankSum=-0.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC078881.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408572    GT:AD:DP:GQ:PL    0/1:32,27:59:99:874,0,1262
4    178881816    rs10520397    C    G    210.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-389E17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507870    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
4    178881982    rs13109967    G    T    2439.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.78;MQ0=0;MQRankSum=1.176;QD=29.39;ReadPosRankSum=-1.476;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_4_178881916_178882059;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-389E17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507870    GT:AD:DP:GQ:PL    1/1:2,80:83:99:2473,159,0
4    178882120    rs9994032    A    T    2096.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.18;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-389E17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507870    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2129,160,0
4    178882197    rs74822716    GA    G    362.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=8;HaplotypeScore=84.6352;IndelType=D;MQ=60.72;MQ0=0;QD=24.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-389E17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507870    GT:AD:DP:GQ:PL    1/1:1,14:15:42.06:405,42,0
4    178882243    rs35045680    T    C    155.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-389E17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507870    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:189,15,0
4    178897192    rs34608653    A    C    1492.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=29.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-389E17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507870    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1525,129,0
4    178911873    rs17065497    G    A    76.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-389E17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507870    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:106,0,31
4    183063488    rs17233820    C    G    180.57    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=2.141;QD=15.05;ReadPosRankSum=-0.689;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512480    GT:AD:DP:GQ:PL    0/1:5,7:12:99:211,0,163
4    183063751    rs72693841    T    A    292.86    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.366;DB;DP=48;Dels=0.0;FS=3.874;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.868;QD=6.1;ReadPosRankSum=2.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512480    GT:AD:DP:GQ:PL    0/1:35,13:48:99:323,0,1117
4    183267728    rs33933747    TA    T    1095.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.052;DB;DP=70;FS=0.0;HRun=14;HaplotypeScore=330.9856;IndelType=D;MQ=58.28;MQ0=0;MQRankSum=2.012;QD=15.65;ReadPosRankSum=1.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    1/1:15,54:70:99:1138,161,0
4    183267742    .    AG    A    178.95    PASS    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=1.116;DP=83;FS=25.813;HRun=1;HaplotypeScore=484.3403;IndelType=D;MQ=57.69;MQ0=0;MQRankSum=-0.788;QD=2.16;ReadPosRankSum=0.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:73,10:83:99:218,0,471
4    183268148    rs11373586    C    CG    703.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=8;HaplotypeScore=146.345;IndelType=I;MQ=59.95;MQ0=0;QD=25.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512480    GT:AD:DP:GQ:PL    1/1:8,20:28:66.18:745,66,0
4    183268174    rs6552554    C    T    485.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512480    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:518,42,0
4    183522021    .    C    CAT    396.53    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DP=22;FS=0.0;HRun=0;HaplotypeScore=134.0144;IndelType=I;MQ=44.38;MQ0=0;MQRankSum=-0.844;QD=18.02;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:15,7:22:99:436,0,238
4    183522526    rs28403363    A    G    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,70
4    183600752    rs67343336    GA    G    355.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.638;DB;DP=35;FS=2.691;HRun=11;HaplotypeScore=103.8034;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.842;QD=10.16;ReadPosRankSum=1.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:14,20:35:99:395,0,274
4    183601590    rs34738241    A    AG    258.07    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.029;DB;DP=53;FS=1.317;HRun=9;HaplotypeScore=314.7375;IndelType=I;MQ=58.0;MQ0=0;MQRankSum=0.026;QD=4.87;ReadPosRankSum=-1.698;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:39,14:53:99:297,0,647
4    183601594    rs11934254    G    A    781.71    HaplotypeScoreFilter13    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.808;DB;DP=53;Dels=0.0;FS=1.12;HRun=0;HaplotypeScore=15.9171;MQ=58.0;MQ0=0;MQRankSum=0.694;QD=14.75;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:24,29:53:99:812,0,127
4    183601847    rs2871328    T    C    1166.45    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.204;DB;DP=80;Dels=0.0;FS=5.841;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.817;QD=14.58;ReadPosRankSum=-0.266;SNPEFF_AMINO_ACID_CHANGE=S597;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_183601696_183601890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:36,44:80:99:1196,0,1165
4    183649938    rs2309698    G    A    283.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
4    183650026    rs11320971    GA    G    335.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=13;HaplotypeScore=117.7764;IndelType=D;MQ=59.38;MQ0=0;QD=15.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    1/1:4,17:22:53.30:378,53,0
4    183652175    rs10866256    T    C    5659.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.86;MQ0=0;QD=35.6;SNPEFF_AMINO_ACID_CHANGE=D950;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_183652031_183652292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5660,415,0
4    183659362    rs2309767    T    C    553.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:587,45,0
4    183659722    rs74988363    G    C    1015.50    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.984;DB;DP=68;Dels=0.0;FS=2.598;HRun=0;HaplotypeScore=2.5482;MQ=59.66;MQ0=0;MQRankSum=0.989;QD=14.93;ReadPosRankSum=-1.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:36,32:68:99:1045,0,1131
4    183664522    rs7654255    T    C    1047.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.562;DB;DP=105;Dels=0.0;FS=0.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.239;QD=9.97;ReadPosRankSum=1.455;SNPEFF_AMINO_ACID_CHANGE=Y1193;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_183664323_183664572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:63,42:105:99:1077,0,1962
4    183664593    rs7676674    G    A    1252.15    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.798;DB;DP=74;Dels=0.0;FS=0.942;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.296;QD=16.92;ReadPosRankSum=-1.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    0/1:32,42:74:99:1282,0,919
4    183673247    rs2309770    T    A    127.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=18.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:160,12,0
4    183674577    rs13130747    G    C    2730.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ODZ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406950    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2764,202,0
4    183747706    rs4629492    A    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC114798.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408259    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
4    183959226    rs2016910    T    G    1481.90    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=3.78;DB;DP=91;Dels=0.0;FS=1.728;HRun=1;HaplotypeScore=1.5717;MQ=59.75;MQ0=0;MQRankSum=-1.482;QD=16.28;ReadPosRankSum=-0.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM92A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502308    GT:AD:DP:GQ:PL    0/1:41,50:91:99:1512,0,1061
4    184170025    rs907357    G    A    1571.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.565;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508614    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1604,120,0
4    184180920    rs11132172    G    A    56.77    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.1;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378925    GT:AD:DP:GQ:PL    0/1:5,3:8:86.76:87,0,178
4    184182001    rs10780066    A    G    1457.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378925    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1491,114,0
4    184189952    rs3926627    G    A    68.81    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=9.83;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378925    GT:AD:DP:GQ:PL    0/1:4,3:7:98.81:99,0,122
4    184190355    rs11407064    A    AC    2863.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=0;HaplotypeScore=154.3609;IndelType=I;MQ=60.33;MQ0=0;QD=46.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378925    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2905,184,0
4    184190535    rs6858486    G    A    2082.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378925    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2116,153,0
4    184192183    rs28647357    T    C    263.83    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=13.89;ReadPosRankSum=0.939;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378925    GT:AD:DP:GQ:PL    0/1:10,9:19:99:294,0,349
4    184192278    rs11734376    G    T    922.59    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.966;DB;DP=77;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.7356;MQ=59.7;MQ0=0;MQRankSum=0.27;QD=11.98;ReadPosRankSum=-0.238;SNPEFF_AMINO_ACID_CHANGE=V498F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184192233_184192394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504005    GT:AD:DP:GQ:PL    0/1:39,38:77:99:953,0,1220
4    184201909    rs11132173    G    A    278.16    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.164;DB;DP=28;Dels=0.0;FS=1.549;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.753;QD=9.93;ReadPosRankSum=-1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403733    GT:AD:DP:GQ:PL    0/1:17,11:28:99:308,0,510
4    184202148    rs11132174    G    T    1187.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403733    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1220,90,0
4    184203706    rs2871353    A    T    107.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515284    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:140,12,0
4    184203886    rs3814422    G    C    830.49    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=70;Dels=0.0;FS=5.945;HRun=0;HaplotypeScore=2.829;MQ=59.07;MQ0=0;MQRankSum=-1.047;QD=11.86;ReadPosRankSum=-0.899;SNPEFF_AMINO_ACID_CHANGE=D32H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184203760_184204059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508747    GT:AD:DP:GQ:PL    0/1:38,32:70:99:860,0,1265
4    184204099    rs3814421    C    T    511.67    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.564;DB;DP=33;Dels=0.0;FS=3.114;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.69;QD=15.51;ReadPosRankSum=-0.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515284    GT:AD:DP:GQ:PL    0/1:14,19:33:99:542,0,490
4    184204267    rs3814418    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
4    184242959    rs6839940    C    G    256.36    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.769;DB;DP=23;Dels=0.0;FS=1.86;HRun=0;HaplotypeScore=0.8321;MQ=53.83;MQ0=0;MQRankSum=-0.585;QD=11.15;ReadPosRankSum=-2.677;SNPEFF_AMINO_ACID_CHANGE=Q207H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184242917_184243579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541814    GT:AD:DP:GQ:PL    0/1:11,12:23:99:286,0,337
4    184243528    rs7688467    G    A    4833.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=50.77;MQ0=0;QD=35.03;SNPEFF_AMINO_ACID_CHANGE=L10F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184242965_184243561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000514470    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4834,367,0
4    184366629    rs11282266    T    TGCACA    2683.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=104.8269;IndelType=I;MQ=51.6;MQ0=0;QD=86.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKN2AIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302350    GT:AD:DP:GQ:PL    1/1:4,27:31:90.31:2725,90,0
4    184367558    rs147291711    TCTG    T    2063.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=180.7721;IndelType=D;MQ=54.55;MQ0=0;QD=51.58;SNPEFF_AMINO_ACID_CHANGE=SA241S;SNPEFF_CODON_CHANGE=tctgca/tca;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_4_184367241_184369351;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKN2AIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504169    GT:AD:DP:GQ:PL    1/1:0,40:40:99:2105,120,0
4    184426387    rs8872    C    T    195.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=A13;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184426147_184426520;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302327    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:229,18,0
4    184426526    rs6552675    A    G    46.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302327    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
4    184432088    .    G    T    282.12    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.654;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.021;QD=14.85;ReadPosRankSum=1.347;SNPEFF_AMINO_ACID_CHANGE=D236Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184431435_184432105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434682    GT:AD:DP:GQ:PL    0/1:10,9:19:99:312,0,320
4    184570715    rs10015804    T    G    972.28    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.095;DB;DP=60;Dels=0.0;FS=2.547;HRun=0;HaplotypeScore=5.5923;MQ=57.44;MQ0=0;MQRankSum=1.553;QD=16.2;ReadPosRankSum=-1.093;SNPEFF_AMINO_ACID_CHANGE=I124L;SNPEFF_CODON_CHANGE=Ata/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184570604_184570721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326397    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1002,0,666
4    184572036    rs4547833    C    T    105.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.1;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506467    GT:AD:DP:GQ:PL    0/1:3,4:7:99:136,0,107
4    184572341    rs71589580    GA    G    841.75    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=4.369;DB;DP=53;FS=2.446;HRun=4;HaplotypeScore=159.7764;IndelType=D;MQ=59.42;MQ0=0;MQRankSum=-0.849;QD=15.88;ReadPosRankSum=-0.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506467    GT:AD:DP:GQ:PL    0/1:24,29:53:99:881,0,849
4    184577270    rs73002733    T    C    117.34    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=16.76;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326397    GT:AD:DP:GQ:PL    0/1:1,6:7:24.61:147,0,25
4    184587658    rs5864850    G    GTACC    481.86    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=24;FS=2.793;HRun=0;HaplotypeScore=106.937;IndelType=I;MQ=57.53;MQ0=0;MQRankSum=-1.259;QD=20.08;ReadPosRankSum=-0.613;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504526    GT:AD:DP:GQ:PL    0/1:17,6:24:99:521,0,762
4    184587701    rs9996255    G    A    174.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.72;MQ0=0;MQRankSum=-0.177;QD=11.62;ReadPosRankSum=0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504526    GT:AD:DP:GQ:PL    0/1:9,6:15:99:204,0,329
4    184588309    rs12507873    A    C    1854.23    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=2.958;DB;DP=109;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=2.9153;MQ=59.79;MQ0=0;MQRankSum=-0.805;QD=17.01;ReadPosRankSum=1.673;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504526    GT:AD:DP:GQ:PL    0/1:47,62:109:99:1884,0,1372
4    184588977    rs7655435    T    C    148.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.87;ReadPosRankSum=1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504526    GT:AD:DP:GQ:PL    0/1:5,5:10:99:179,0,178
4    184596446    rs7678174    G    A    349.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.402;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.23;MQ0=0;MQRankSum=-0.402;QD=11.64;ReadPosRankSum=-0.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509857    GT:AD:DP:GQ:PL    0/1:18,12:30:99:379,0,536
4    184600601    rs4241779    A    G    422.31    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DB;DP=36;Dels=0.0;FS=7.18;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.971;QD=11.73;ReadPosRankSum=-1.608;SNPEFF_AMINO_ACID_CHANGE=A309;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184600506_184600639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334690    GT:AD:DP:GQ:PL    0/1:20,16:36:99:452,0,660
4    184601195    rs10022122    T    G    326.61    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.453;QD=20.41;ReadPosRankSum=0.793;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511409    GT:AD:DP:GQ:PL    0/1:5,11:16:99:357,0,113
4    184606653    rs11132206    G    A    211.29    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.484;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.226;QD=9.19;ReadPosRankSum=0.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334690    GT:AD:DP:GQ:PL    0/1:15,8:23:99:241,0,540
4    184607970    rs9312316    T    C    613.25    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.25;DB;DP=51;Dels=0.0;FS=7.198;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.272;QD=12.02;ReadPosRankSum=-1.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334690    GT:AD:DP:GQ:PL    0/1:26,25:51:99:643,0,870
4    184612553    rs67383011    G    C    537.66    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=43;Dels=0.0;FS=2.876;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=2.08;QD=12.5;ReadPosRankSum=-0.48;SNPEFF_AMINO_ACID_CHANGE=V266L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184612469_184612624;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000512476    GT:AD:DP:GQ:PL    0/1:25,18:43:99:568,0,722
4    184614603    rs36125309    C    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334690    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,113
4    184615948    rs36221086    TATAAAATAAGC    T    577.50    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=145.4458;IndelType=D;MQ=48.98;MQ0=0;MQRankSum=-1.977;QD=38.5;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334690    GT:AD:DP:GQ:PL    0/1:8,7:15:99:617,0,728
4    184619017    rs12651215    C    G    294.42    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=0.648;QD=17.32;ReadPosRankSum=-1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334690    GT:AD:DP:GQ:PL    0/1:7,9:17:99:324,0,149
4    184629794    rs9312318    G    A    288.54    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.054;QD=18.03;ReadPosRankSum=-0.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506426    GT:AD:DP:GQ:PL    0/1:6,10:16:99:319,0,205
4    184922669    rs3749534    G    A    447.39    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.885;DB;DP=49;Dels=0.0;FS=1.542;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.247;QD=9.13;ReadPosRankSum=-0.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511250    GT:AD:DP:GQ:PL    0/1:33,16:49:99:477,0,1016
4    184930289    rs71591614    G    GT    74.55    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=55;FS=10.843;HRun=18;HaplotypeScore=453.0033;IndelType=I;MQ=48.68;MQ0=0;MQRankSum=-0.529;QD=1.36;ReadPosRankSum=1.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308497    GT:AD:DP:GQ:PL    0/1:39,8:55:55.51:114,0,56
4    184931818    rs4861597    G    A    3359.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.49;MQ0=0;QD=36.92;SNPEFF_AMINO_ACID_CHANGE=T609;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_184930311_184932576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STOX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308497    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3360,244,0
4    184932609    rs4862282    G    A    1247.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512520    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1281,102,0
4    184932631    rs72697716    A    G    371.63    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.179;QD=11.26;ReadPosRankSum=-0.019;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512520    GT:AD:DP:GQ:PL    0/1:21,12:33:99:402,0,721
4    185012387    rs28495394    C    T    460.81    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.511;DB;DP=60;Dels=0.0;FS=10.797;HRun=0;HaplotypeScore=2.3119;MQ=55.21;MQ0=0;MQRankSum=1.965;QD=7.68;ReadPosRankSum=-0.637;SNPEFF_AMINO_ACID_CHANGE=P422;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_185009859_185012535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296741    GT:AD:DP:GQ:PL    0/1:34,25:60:99:491,0,782
4    185012398    rs4479748    T    C    522.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=57;Dels=0.0;FS=29.368;HRun=1;HaplotypeScore=1.989;MQ=55.39;MQ0=0;MQRankSum=2.869;QD=9.17;ReadPosRankSum=0.371;SNPEFF_AMINO_ACID_CHANGE=S419G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_185009859_185012535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296741    GT:AD:DP:GQ:PL    0/1:28,28:57:99:553,0,703
4    185034183    rs4862310    G    T    37.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.736;QD=12.49;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512353    GT:AD:DP:GQ:PL    0/1:1,2:3:34.29:67,0,34
4    185038274    rs4642291    G    A    60.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.76;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296741    GT:AD:DP:GQ:PL    0/1:6,3:9:90.85:91,0,228
4    185074686    rs13147555    A    C    306.47    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.187;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.343;QD=11.79;ReadPosRankSum=0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296741    GT:AD:DP:GQ:PL    0/1:16,10:26:99:336,0,514
4    185310218    rs3775543    C    T    697.96    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=55;Dels=0.0;FS=3.118;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=12.69;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=G105;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_185310194_185310220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502750    GT:AD:DP:GQ:PL    0/1:25,30:55:99:728,0,854
4    185311978    rs77089435    A    G    329.93    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.009;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.359;QD=17.36;ReadPosRankSum=0.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393593    GT:AD:DP:GQ:PL    0/1:6,13:19:99:360,0,194
4    185339043    rs62337750    G    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505316    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
4    185339517    rs2288246    C    T    256.77    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=21.4;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393593    GT:AD:DP:GQ:PL    0/1:2,10:12:51.13:287,0,51
4    185340725    rs72397805    G    GA    100.22    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=37;FS=3.203;HRun=20;HaplotypeScore=301.7125;IndelType=I;MQ=48.24;MQ0=0;MQRankSum=-1.357;QD=2.71;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393593    GT:AD:DP:GQ:PL    0/1:22,8:37:63.46:139,0,63
4    185349956    rs144031741    A    C    57.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=6.36;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393593    GT:AD:DP:GQ:PL    0/1:6,3:9:87.23:87,0,225
4    185553098    rs2705897    T    G    2797.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2859;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308394    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2830,205,0
4    185553353    rs1405944    A    T    661.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308394    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:695,51,0
4    185559487    rs2705901    G    C    712.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308394    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:745,54,0
4    185583092    rs4069932    C    CTATT    2920.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=110.7891;IndelType=I;MQ=60.31;MQ0=0;QD=81.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC111;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509538    GT:AD:DP:GQ:PL    1/1:0,33:36:99:2962,108,0
4    185587165    rs2463447    A    G    1784.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=Q168R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_185587071_185587218;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC111;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314970    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1818,135,0
4    185606395    rs2705889    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC111;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314970    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
4    185612627    rs72154268    CT    C    300.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.98;DB;DP=27;FS=0.0;HRun=15;HaplotypeScore=87.8707;IndelType=D;MQ=59.33;MQ0=0;MQRankSum=0.377;QD=10.73;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281453    GT:AD:DP:GQ:PL    1/1:4,20:27:37.91:343,38,0
4    185622046    rs11728389    C    T    1659.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281453    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1693,123,0
4    185649852    rs6843169    T    C    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281453    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
4    185652147    rs3806796    G    A    491.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281453    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:524,39,0
4    185652201    rs7675046    G    A    65.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4779;MQ=56.62;MQ0=0;QD=9.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281453    GT:AD:DP:GQ:PL    1/1:1,5:7:9.01:98,9,0
4    185678110    rs2292899    A    G    249.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.912;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.25;QD=9.97;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504342    GT:AD:DP:GQ:PL    0/1:15,10:25:99:279,0,511
4    185678118    rs4862413    C    G    1131.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=37.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504342    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1165,87,0
4    185681475    rs6825554    G    C    5804.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7331;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281455    GT:AD:DP:GQ:PL    1/1:0,162:162:99:5805,421,0
4    185683840    rs939040    A    G    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281455    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
4    185686032    rs2292898    C    T    490.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=L298;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_185686007_185686079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437665    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:524,39,0
4    185687233    rs3749233    C    T    272.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.925;QD=22.7;ReadPosRankSum=-0.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504900    GT:AD:DP:GQ:PL    0/1:3,9:12:88.77:302,0,89
4    185687687    rs12374289    A    C    1213.90    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=95;Dels=0.0;FS=4.725;HRun=1;HaplotypeScore=0.9578;MQ=59.27;MQ0=0;MQRankSum=-1.251;QD=12.78;ReadPosRankSum=-0.559;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504900    GT:AD:DP:GQ:PL    0/1:53,42:95:99:1244,0,1526
4    185687863    rs11727009    A    G    1103.71    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-0.095;QD=16.72;ReadPosRankSum=0.924;SNPEFF_AMINO_ACID_CHANGE=F221;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_185687776_185687910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437665    GT:AD:DP:GQ:PL    0/1:28,38:66:99:1134,0,764
4    185697441    rs1873226    G    T    119.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281455    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:152,12,0
4    185697530    .    GCC    G    405.46    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.344;DP=15;FS=0.0;HRun=2;HaplotypeScore=64.1758;IndelType=D;MQ=59.18;MQ0=0;MQRankSum=0.071;QD=27.03;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281455    GT:AD:DP:GQ:PL    0/1:4,11:15:99:444,0,202
4    185705006    rs2102862    G    A    1535.75    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=6.122;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.439;MQ=59.55;MQ0=0;MQRankSum=-0.572;QD=15.06;ReadPosRankSum=-0.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281455    GT:AD:DP:GQ:PL    0/1:50,52:102:99:1566,0,1292
4    185940461    rs4862491    C    T    257.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338875    GT:AD:DP:GQ:PL    1/1:0,8:9:24.07:291,24,0
4    185940952    rs1078461    C    G    150.93    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=7.55;ReadPosRankSum=0.555;SNPEFF_AMINO_ACID_CHANGE=L147V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_185940778_185940997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338875    GT:AD:DP:GQ:PL    0/1:13,7:20:99:181,0,408
4    185941223    rs77284990    G    T    35.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338875    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
4    185941964    rs6841359    G    A    267.96    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=26;Dels=0.0;FS=6.402;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=10.31;ReadPosRankSum=1.557;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338875    GT:AD:DP:GQ:PL    0/1:15,11:26:99:298,0,389
4    185999348    rs10023344    T    C    117.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=16.75;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-386B13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509017    GT:AD:DP:GQ:PL    0/1:3,4:7:94.73:147,0,95
4    185999543    rs6841061    G    A    1094.85    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=81;Dels=0.0;FS=4.422;HRun=3;HaplotypeScore=1.9998;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=13.52;ReadPosRankSum=0.407;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-386B13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509017    GT:AD:DP:GQ:PL    0/1:38,41:81:99:1125,0,1148
4    185999587    rs6818170    T    A    844.76    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.871;DB;DP=58;Dels=0.0;FS=4.464;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.758;QD=14.56;ReadPosRankSum=0.072;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-386B13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509017    GT:AD:DP:GQ:PL    0/1:28,30:58:99:875,0,857
4    186065844    rs71591698    C    CT    630.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=9;HaplotypeScore=98.7447;IndelType=I;MQ=57.33;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281456    GT:AD:DP:GQ:PL    1/1:3,20:24:63:673,63,0
4    186111639    rs1133657    T    C    5439.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.864;DB;DP=155;Dels=0.0;FS=6.22;HRun=0;HaplotypeScore=4.787;MQ=59.76;MQ0=0;MQRankSum=2.418;QD=35.1;ReadPosRankSum=-1.593;SNPEFF_AMINO_ACID_CHANGE=T238A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186111297_186112366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1430;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296775    GT:AD:DP:GQ:PL    1/1:2,153:155:99:5440,339,0
4    186112111    rs3108237    G    A    2909.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5776;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=30.95;ReadPosRankSum=-0.328;SNPEFF_AMINO_ACID_CHANGE=P80;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186111297_186112366;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1430;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296775    GT:AD:DP:GQ:PL    1/1:2,92:94:99:2942,187,0
4    186112369    rs71593606    G    GA    2438.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.0;HRun=9;HaplotypeScore=197.0233;IndelType=I;MQ=59.55;MQ0=0;QD=30.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296775    GT:AD:DP:GQ:PL    1/1:8,73:81:99:2481,226,0
4    186168387    rs3108252    T    G    443.27    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.282;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.576;QD=14.3;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264694    GT:AD:DP:GQ:PL    0/1:14,17:31:99:473,0,489
4    186185551    rs2280664    T    C    585.36    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=4.172;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6498;MQ=59.48;MQ0=0;MQRankSum=0.67;QD=11.04;ReadPosRankSum=-0.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264694    GT:AD:DP:GQ:PL    0/1:29,24:53:99:615,0,915
4    186188008    rs141461729    CCT    C    213.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=31.8627;IndelType=D;MQ=62.13;MQ0=0;MQRankSum=1.568;QD=21.32;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264694    GT:AD:DP:GQ:PL    0/1:4,6:10:99:252,0,214
4    186188460    rs3112865    C    T    38.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
4    186232081    rs3806822    A    G    77.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.35;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264694    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:107,0,26
4    186272721    rs61731371    A    G    365.97    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.447;DB;DP=36;Dels=0.0;FS=15.933;HRun=0;HaplotypeScore=3.8515;MQ=59.23;MQ0=0;MQRankSum=2.5;QD=10.17;ReadPosRankSum=0.05;SNPEFF_AMINO_ACID_CHANGE=S177;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186272599_186272763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264693    GT:AD:DP:GQ:PL    0/1:19,17:36:99:396,0,544
4    186272773    rs3822302    T    C    355.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.137;DB;DP=28;Dels=0.0;FS=6.805;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.493;QD=12.69;ReadPosRankSum=0.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264693    GT:AD:DP:GQ:PL    0/1:14,14:28:99:385,0,464
4    186278735    rs74735070    A    C    97.34    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.312;QD=7.49;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264693    GT:AD:DP:GQ:PL    0/1:9,4:13:99:127,0,319
4    186294284    rs3797027    T    C    197.03    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.269;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.11;MQ0=0;MQRankSum=-1.132;QD=7.58;ReadPosRankSum=0.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511404    GT:AD:DP:GQ:PL    0/1:17,9:26:99:227,0,572
4    186295175    rs17884285    A    G    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.86;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511404    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,106
4    186299260    rs2030802    A    G    1408.09    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=0.79;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.042;QD=16.0;ReadPosRankSum=-0.176;SNPEFF_AMINO_ACID_CHANGE=F27;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186299235_186300152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2BP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328559    GT:AD:DP:GQ:PL    0/1:39,49:88:99:1438,0,1179
4    186299519    rs1288549    A    C    35.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.06;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP2BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505916    GT:AD:DP:GQ:PL    0/1:3,2:5:65.29:65,0,105
4    186318482    rs58348740    C    T    424.71    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.414;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.139;QD=15.73;ReadPosRankSum=0.915;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507753    GT:AD:DP:GQ:PL    0/1:11,16:27:99:455,0,339
4    186318536    rs115820456    G    T    329.08    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=17.32;ReadPosRankSum=-0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507753    GT:AD:DP:GQ:PL    0/1:7,12:19:99:359,0,188
4    186320666    rs11353272    TA    T    452.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=9;HaplotypeScore=51.9143;IndelType=D;MQ=60.57;MQ0=0;QD=23.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507479    GT:AD:DP:GQ:PL    1/1:1,18:19:54.03:494,54,0
4    186320880    rs4631093    A    G    866.72    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.86;DB;DP=82;Dels=0.0;FS=3.454;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.668;QD=10.44;ReadPosRankSum=-1.562;SNPEFF_AMINO_ACID_CHANGE=K143;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186320724_186320927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335174    GT:AD:DP:GQ:PL    0/1:48,34:82:99:897,0,1525
4    186320906    rs4317244    C    G    593.96    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.084;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.698;QD=9.9;ReadPosRankSum=-0.314;SNPEFF_AMINO_ACID_CHANGE=T152S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186320724_186320927;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335174    GT:AD:DP:GQ:PL    0/1:38,22:60:99:624,0,1245
4    186321447    rs3733646    C    G    344.85    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.958;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.943;QD=13.79;ReadPosRankSum=0.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335174    GT:AD:DP:GQ:PL    0/1:14,11:25:99:375,0,500
4    186324637    rs57531660    T    C    246.99    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=32;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=7.72;ReadPosRankSum=-0.671;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335174    GT:AD:DP:GQ:PL    0/1:22,10:32:99:277,0,670
4    186324841    rs13126680    T    A    440.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335174    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:474,36,0
4    186334799    rs73873445    A    G    431.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.316;DB;DP=36;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.064;QD=11.98;ReadPosRankSum=0.963;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502282    GT:AD:DP:GQ:PL    0/1:21,15:36:99:461,0,704
4    186336583    rs10032989    G    A    417.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502282    GT:AD:DP:GQ:PL    1/1:0,11:12:33.11:451,33,0
4    186339449    rs10000869    A    G    77.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=15.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264689    GT:AD:DP:GQ:PL    0/1:2,3:5:60.15:108,0,60
4    186339584    rs10003160    A    G    2406.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UFSP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264689    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2439,178,0
4    186347092    rs10866275    T    C    77.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.44;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C4orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378850    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:109,9,0
4    186350440    rs11388869    C    CT    128.67    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;FS=0.0;HRun=6;HaplotypeScore=13.2851;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=18.38;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C4orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511138    GT:AD:DP:GQ:PL    0/1:2,5:7:40.18:168,0,40
4    186357034    rs33957611    ATATCT    A    248.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=30.1292;IndelType=D;MQ=46.95;MQ0=0;QD=49.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C4orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378850    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:290,15,0
4    186366615    rs11737048    G    T    479.24    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.211;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.566;QD=12.95;ReadPosRankSum=-0.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C4orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512770    GT:AD:DP:GQ:PL    0/1:19,18:37:99:509,0,615
4    186366809    rs6833872    C    T    374.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C4orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512770    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:408,30,0
4    186379371    rs7687202    G    A    1508.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=Y753;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186379280_186381392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393540    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1542,111,0
4    186379899    rs35596415    G    C    3535.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.353;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2955;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=34.0;ReadPosRankSum=-0.084;SNPEFF_AMINO_ACID_CHANGE=I577M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186379280_186381392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393540    GT:AD:DP:GQ:PL    1/1:1,103:104:99:3536,223,0
4    186380243    rs59319722    A    C    1413.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_AMINO_ACID_CHANGE=Y463D;SNPEFF_CODON_CHANGE=Tac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186379280_186381392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393540    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1447,108,0
4    186380295    rs36007437    A    G    1147.77    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=1.078;DB;DP=61;Dels=0.0;FS=6.234;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=1.195;QD=18.82;ReadPosRankSum=0.037;SNPEFF_AMINO_ACID_CHANGE=N445;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186379280_186381392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393540    GT:AD:DP:GQ:PL    0/1:25,36:61:99:1178,0,810
4    186380515    rs11132306    G    A    3976.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.322;QD=34.57;ReadPosRankSum=-0.322;SNPEFF_AMINO_ACID_CHANGE=S372F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186379280_186381392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393540    GT:AD:DP:GQ:PL    1/1:1,114:115:99:3976,262,0
4    186380846    rs7698680    A    T    2601.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=L262M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186379280_186381392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393540    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2635,190,0
4    186381115    rs7699687    G    T    1551.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=P172Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186379280_186381392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393540    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1585,126,0
4    186381165    rs7699724    G    A    1827.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=37.29;SNPEFF_AMINO_ACID_CHANGE=D155;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186379280_186381392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393540    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1860,138,0
4    186382206    rs11132309    A    G    1371.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.254;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.79;MQ0=0;MQRankSum=-1.314;QD=23.24;ReadPosRankSum=-1.135;SNPEFF_AMINO_ACID_CHANGE=D115;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186382203_186382313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307588    GT:AD:DP:GQ:PL    1/1:1,58:59:71.71:1404,72,0
4    186382407    rs62345633    A    T    59.42    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=4.57;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307588    GT:AD:DP:GQ:PL    0/1:9,4:13:89.41:89,0,298
4    186423637    rs4635850    G    A    2037.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=V254;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186422905_186423637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284771    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2070,156,0
4    186423677    rs10866276    G    A    1109.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505886    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1143,84,0
4    186427841    rs2306705    T    C    424.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=24.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512293    GT:AD:DP:GQ:PL    1/1:0,17:17:39.10:457,39,0
4    186444698    rs4862543    A    C    109.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=18.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284767    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:142,12,0
4    186444704    rs4861669    C    T    78.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=15.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284767    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:111,9,0
4    186456617    rs4862545    A    G    248.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.61;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_4_186456496_186456656;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284767    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:281,21,0
4    186508723    rs3186    G    T    156.92    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.847;DB;DP=16;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=9.81;ReadPosRankSum=1.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478461    GT:AD:DP:GQ:PL    0/1:9,7:16:99:187,0,309
4    186544435    rs28528960    C    T    2618.82    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=5.429;DB;DP=184;Dels=0.0;FS=11.345;HRun=0;HaplotypeScore=3.5582;MQ=59.75;MQ0=0;MQRankSum=-1.008;QD=14.23;ReadPosRankSum=-0.765;SNPEFF_AMINO_ACID_CHANGE=S616;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_186544068_186545648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418609    GT:AD:DP:GQ:PL    0/1:97,87:184:99:2649,0,2653
4    186545719    rs13119106    G    T    143.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=15.9;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487836    GT:AD:DP:GQ:PL    0/1:4,5:9:99:173,0,138
4    186551624    rs1471794    T    G    291.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=19.45;ReadPosRankSum=-0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490562    GT:AD:DP:GQ:PL    0/1:5,10:15:99:322,0,165
4    186559007    rs10006116    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492104    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    186570521    rs7663196    C    T    148.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.876;QD=16.55;ReadPosRankSum=1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439914    GT:AD:DP:GQ:PL    0/1:4,5:9:97.47:179,0,97
4    186570855    rs7663827    C    A    212.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=15.14;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439914    GT:AD:DP:GQ:PL    0/1:6,8:14:99:242,0,168
4    186572791    rs4862557    C    T    201.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439914    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:235,18,0
4    186578529    rs2306703    T    A    188.77    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=17.16;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393523    GT:AD:DP:GQ:PL    0/1:4,7:11:99:219,0,132
4    186583622    rs4327531    G    T    67.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:99,9,0
4    186599351    rs4407549    C    T    212.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429056    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
4    186611576    rs55889604    A    G    182.08    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.289;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.652;QD=12.14;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284776    GT:AD:DP:GQ:PL    0/1:7,8:15:99:212,0,254
4    186611819    rs79427853    A    G    290.39    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.099;QD=13.2;ReadPosRankSum=-2.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284776    GT:AD:DP:GQ:PL    0/1:12,10:22:99:320,0,413
4    186920675    rs11939523    C    A    3101.22    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.115;DB;DP=250;DS;Dels=0.0;FS=3.673;HRun=1;HaplotypeScore=5.0714;MQ=54.86;MQ0=2;MQRankSum=1.757;QD=12.4;ReadPosRankSum=0.281;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:138,112:250:99:3131,0,4121
4    186920750    rs35235875    A    G    2125.86    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.267;DB;DP=200;DS;Dels=0.0;FS=0.614;HRun=0;HaplotypeScore=7.0435;MQ=46.47;MQ0=11;MQRankSum=-3.747;QD=10.58;ReadPosRankSum=-2.031;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:96,104:200:99:2156,0,2619
4    186920779    rs11939591    C    A    1770.24    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=6.863;DB;DP=162;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.6274;MQ=41.05;MQ0=14;MQRankSum=5.515;QD=10.93;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:99,63:162:99:1800,0,1638
4    186920804    rs28731107    C    G    587.36    MQFilter40    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=114;Dels=0.0;FS=2.581;HRun=0;HaplotypeScore=0.0;MQ=29.87;MQ0=31;MQRankSum=4.922;QD=5.15;ReadPosRankSum=-5.539;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:84,30:114:99:617,0,893
4    186920831    rs830844    A    C    828.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=23.46;MQ0=26;QD=12.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,67:68:75.10:862,75,0
4    186920855    rs79096317    C    G    64.45    MQFilter40;QDFilter2    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.646;DB;DP=130;Dels=0.0;FS=9.412;HRun=3;HaplotypeScore=3.9352;MQ=18.6;MQ0=64;MQRankSum=-0.269;QD=0.5;ReadPosRankSum=1.346;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:94,36:130:94.44:94,0,679
4    186920984    rs79933946    C    G    474.26    HaplotypeScoreFilter13;MQFilter40;QDFilter2;ReadPosRankSumFilter8    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.952;DB;DP=250;DS;Dels=0.0;FS=39.258;HRun=0;HaplotypeScore=36.9612;MQ=32.16;MQ0=33;MQRankSum=-3.924;QD=1.9;ReadPosRankSum=-8.241;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:185,65:250:99:504,0,3866
4    186921425    rs2680733    T    C    178.65    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=0.296;QD=16.24;ReadPosRankSum=1.386;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,8:11:99:209,0,99
4    186997643    rs1568358    C    G    420.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296795    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
4    187072887    rs2276916    A    G    166.80    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=15.16;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508379    GT:AD:DP:GQ:PL    0/1:5,6:11:99:197,0,172
4    187072932    rs2276914    A    G    1000.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508379    GT:AD:DP:GQ:PL    1/1:0,31:31:90.23:1033,90,0
4    187073000    rs2276913    A    G    1922.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=30.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508379    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1955,162,0
4    187073030    rs2276912    T    C    2688.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6517;MQ=59.49;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508379    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2721,202,0
4    187074833    rs4862650    A    G    5388.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.89;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=K332E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187074799_187074924;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356371    GT:AD:DP:GQ:PL    1/1:0,163:163:99:5389,433,0
4    187075474    rs6552958    G    A    35.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509574    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
4    187077027    rs55822915    C    T    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
4    187077206    rs4862653    A    G    1375    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=K146E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187077154_187077344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000227065    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1408,111,0
4    187077393    rs7670550    T    C    273.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=11.4;ReadPosRankSum=-1.357;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504330    GT:AD:DP:GQ:PL    0/1:12,12:24:99:304,0,402
4    187077437    rs13114283    G    A    160.42    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.493;QD=12.34;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504330    GT:AD:DP:GQ:PL    0/1:7,6:13:99:190,0,248
4    187078785    rs2276924    A    G    1863.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.55;MQ0=0;QD=30.06;SNPEFF_AMINO_ACID_CHANGE=H214R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187078719_187078873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000227065    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1897,156,0
4    187078819    rs2276923    C    G    761.45    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.829;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.229;QD=15.54;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=S225;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187078719_187078873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227065    GT:AD:DP:GQ:PL    0/1:22,27:49:99:791,0,576
4    187078866    rs2276922    C    T    292.45    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.142;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.13;MQ0=0;MQRankSum=0.06;QD=9.14;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=P241L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187078719_187078873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000227065    GT:AD:DP:GQ:PL    0/1:18,14:32:99:322,0,531
4    187079047    rs2276919    A    G    40.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.53;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504330    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:71,0,32
4    187093018    rs4241814    G    T    125.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.95;MQ0=0;MQRankSum=0.194;QD=8.96;ReadPosRankSum=0.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM149A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514956    GT:AD:DP:GQ:PL    0/1:8,6:14:99:155,0,287
4    187115632    rs10013653    C    A    705.64    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.29;DB;DP=48;Dels=0.0;FS=2.968;HRun=3;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.117;QD=14.7;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:22,26:48:99:736,0,675
4    187115841    rs7682918    C    T    141    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=11.75;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:7,5:12:99:171,0,203
4    187118040    rs112367913    TTC    T    234.36    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DB;DP=23;FS=3.68;HRun=0;HaplotypeScore=74.1812;IndelType=D;MQ=60.13;MQ0=0;MQRankSum=0.2;QD=10.19;ReadPosRankSum=0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:14,9:23:99:273,0,533
4    187118662    rs4862662    G    T    518.90    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.209;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=14.02;ReadPosRankSum=0.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:16,21:37:99:549,0,460
4    187120211    rs13146272    C    A    1492.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_AMINO_ACID_CHANGE=Q237K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187120111_187120237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1526,114,0
4    187120361    rs13146537    C    T    111.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.66;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:2,4:6:65.46:142,0,65
4    187120377    rs13146549    C    T    72.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.57;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:2,3:5:59.95:103,0,60
4    187122304    rs3817184    C    T    226.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.511;DB;DP=15;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.061;QD=15.09;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:5,10:15:99:256,0,180
4    187122319    rs3736455    T    G    403.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.24;SNPEFF_AMINO_ACID_CHANGE=A248;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187122311_187122496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    1/1:0,16:16:33.11:437,33,0
4    187126550    rs71593685    TC    T    97.89    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=13;FS=0.0;HRun=5;HaplotypeScore=34.7312;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=0.825;QD=7.53;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:8,5:13:99:137,0,212
4    187129771    rs9685463    G    A    86.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
4    187129814    rs9684134    A    G    295.23    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.45;MQ0=0;MQRankSum=-0.065;QD=19.68;ReadPosRankSum=0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:4,11:15:99:325,0,124
4    187129995    rs2276917    A    G    1087.85    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.297;DB;DP=86;Dels=0.0;FS=1.787;HRun=0;HaplotypeScore=0.9983;MQ=58.93;MQ0=0;MQRankSum=-1.034;QD=12.5;ReadPosRankSum=-0.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274118    GT:AD:DP:GQ:PL    0/1:41,45:86:99:1118,0,1244
4    187130198    rs2276918    A    G    1003    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.526;DB;DP=61;Dels=0.0;FS=1.044;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.055;QD=16.44;ReadPosRankSum=0.758;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,33:61:99:1033,0,879
4    187130620    rs72646294    G    A    64.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.76;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,3:6:94.57:95,0,103
4    187131504    rs2102575    G    A    417.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.92;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:450,33,0
4    187149233    rs4253241    T    C    154.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=17.13;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264690    GT:AD:DP:GQ:PL    0/1:3,6:9:96.53:184,0,97
4    187158034    rs3733402    G    A    448.79    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.695;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8665;MQ=60.0;MQ0=0;MQRankSum=0.724;QD=11.81;ReadPosRankSum=1.345;SNPEFF_AMINO_ACID_CHANGE=S105N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187157935_187158041;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414291    GT:AD:DP:GQ:PL    0/1:22,16:38:99:479,0,652
4    187159282    rs4253256    G    C    338.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414291    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:372,27,0
4    187159405    rs61748604    T    C    441.63    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=37;Dels=0.0;FS=1.43;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.417;QD=11.94;ReadPosRankSum=-2.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414291    GT:AD:DP:GQ:PL    0/1:20,17:37:99:472,0,735
4    187171355    rs4253299    A    G    2511.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264690    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2545,205,0
4    187172280    rs2304595    G    A    213.17    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;MQRankSum=0.0;QD=19.38;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264690    GT:AD:DP:GQ:PL    0/1:4,7:11:99:243,0,114
4    187172353    rs4253300    C    CT    500.56    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.695;DB;DP=40;FS=0.0;HRun=8;HaplotypeScore=93.0851;IndelType=I;MQ=60.27;MQ0=0;MQRankSum=0.885;QD=12.51;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264690    GT:AD:DP:GQ:PL    0/1:21,19:40:99:540,0,432
4    187173012    rs4253301    T    G    1200.79    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.973;QD=17.15;ReadPosRankSum=-1.531;SNPEFF_AMINO_ACID_CHANGE=S343A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187172903_187173015;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418715    GT:AD:DP:GQ:PL    0/1:27,42:70:99:1231,0,788
4    187175722    rs2292423    T    A    486.61    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=3.664;DB;DP=45;Dels=0.0;FS=4.701;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.012;QD=10.81;ReadPosRankSum=-1.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467271    GT:AD:DP:GQ:PL    0/1:28,17:45:99:517,0,762
4    187178300    rs4241822    T    C    145.94    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.85;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467271    GT:AD:DP:GQ:PL    0/1:1,6:7:22.60:176,0,23
4    187178599    rs4253326    C    T    1396.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264690    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1429,105,0
4    187178613    rs4253327    A    T    884.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=23.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264690    GT:AD:DP:GQ:PL    1/1:0,37:37:84.21:918,84,0
4    187179210    rs925453    T    C    388.04    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=38;Dels=0.0;FS=4.863;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=10.21;ReadPosRankSum=0.269;SNPEFF_AMINO_ACID_CHANGE=W503R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187179175_187179624;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418715    GT:AD:DP:GQ:PL    0/1:23,15:38:99:418,0,698
4    187179486    rs3087505    A    G    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLKB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511406    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
4    187188141    rs35709976    G    GAT    480    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=35.3776;IndelType=I;MQ=54.65;MQ0=0;QD=53.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264692    GT:AD:DP:GQ:PL    1/1:1,8:9:27.09:522,27,0
4    187188152    rs3822057    A    C    89.83    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.825;QD=8.17;ReadPosRankSum=-2.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264692    GT:AD:DP:GQ:PL    0/1:6,5:11:99:120,0,212
4    187195551    rs1593    T    A    240.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264692    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
4    187201001    rs2241817    A    G    55.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492972    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:86,0,31
4    187201211    rs5974    A    G    355.96    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=37;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.138;QD=9.62;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=T215;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187201166_187201275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264692    GT:AD:DP:GQ:PL    0/1:21,16:37:99:386,0,694
4    187205301    rs5970    T    C    1233.27    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.715;DB;DP=79;Dels=0.0;FS=7.48;HRun=0;HaplotypeScore=0.9734;MQ=59.47;MQ0=0;MQRankSum=-0.76;QD=15.61;ReadPosRankSum=-2.341;SNPEFF_AMINO_ACID_CHANGE=G345;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187205246_187205414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264692    GT:AD:DP:GQ:PL    0/1:33,46:79:99:1263,0,941
4    187207381    rs2289252    C    T    123.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=13.73;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264692    GT:AD:DP:GQ:PL    0/1:4,5:9:88.87:154,0,89
4    187454701    rs2165668    T    C    338.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTNR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307161    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:371,27,0
4    187455946    rs6553008    T    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTNR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307161    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
4    187518980    rs1280096    T    C    3985.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.8;MQ0=0;QD=34.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503253    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3986,316,0
4    187519206    rs1280097    C    G    4329.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.63;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=K4059N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187519126_187519279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441802    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4330,328,0
4    187522789    rs767168    T    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
4    187527039    rs11735243    G    A    118.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508035    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
4    187527472    rs2584344    A    G    747.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.131;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.98;QD=29.89;ReadPosRankSum=0.829;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508035    GT:AD:DP:GQ:PL    1/1:1,24:25:27.08:780,27,0
4    187530313    rs4862722    C    T    2473.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508035    GT:AD:DP:GQ:PL    1/1:0,69:70:99:2507,184,0
4    187530731    rs35884817    T    C    121.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=20.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:154,12,0
4    187534363    rs2249916    G    A    4686.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8377;MQ=58.99;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=N3121;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187534263_187534496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441802    GT:AD:DP:GQ:PL    1/1:0,133:133:99:4686,352,0
4    187534375    rs2249917    A    G    4498.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=D3117;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187534263_187534496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441802    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4499,352,0
4    187534542    rs2249926    T    C    2088.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.29;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2122,165,0
4    187534689    rs2584351    G    T    80.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
4    187535063    rs2584350    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
4    187535121    rs72716259    T    C    205.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:239,21,0
4    187535169    rs2584349    T    C    779.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:813,60,0
4    187535588    rs56242383    T    C    586.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:619,48,0
4    187538133    rs1280100    A    G    2794.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,92:93:99:2827,232,0
4    187538330    rs1280099    G    A    3565.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6147;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_AMINO_ACID_CHANGE=A2968;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187538159_187538355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441802    GT:AD:DP:GQ:PL    1/1:0,108:111:99:3566,256,0
4    187538942    rs1280098    T    G    3829.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=3.4008;MQ=59.35;MQ0=0;QD=28.37;SNPEFF_AMINO_ACID_CHANGE=Q2933P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187538862_187542929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441802    GT:AD:DP:GQ:PL    1/1:0,134:134:99:3829,316,0
4    187540040    rs116784674    C    T    2149.73    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=3.235;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5607;MQ=59.83;MQ0=0;MQRankSum=1.208;QD=15.47;ReadPosRankSum=-0.57;SNPEFF_AMINO_ACID_CHANGE=R2567H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187538862_187542929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441802    GT:AD:DP:GQ:PL    0/1:69,70:139:99:2180,0,2055
4    187557893    rs328418    T    C    7639.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=236;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6153;MQ=59.31;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=H1273R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187557739_187558068;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,236:236:99:7640,620,0
4    187558187    rs3830339    CA    C    1785.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=2;HaplotypeScore=128.3299;IndelType=D;MQ=59.75;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1827,141,0
4    187561080    rs10001377    A    G    626.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:659,48,0
4    187584771    rs172903    C    G    809.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=27.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,29:29:60.20:842,60,0
4    187627659    .    TA    T    296.92    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.308;DP=113;FS=1.215;HRun=16;HaplotypeScore=856.8622;IndelType=D;MQ=53.93;MQ0=0;MQRankSum=0.009;QD=2.63;ReadPosRankSum=1.549;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509647    GT:AD:DP:GQ:PL    0/1:60,32:113:99:336,0,662
4    187627792    rs11939575    T    C    6103.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.1;MQ0=0;QD=32.64;SNPEFF_AMINO_ACID_CHANGE=R1064G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187627717_187630999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,187:187:99:6103,487,0
4    187628398    rs1877731    C    G    5282.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0234;MQ=59.69;MQ0=0;QD=35.93;SNPEFF_AMINO_ACID_CHANGE=V862L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187627717_187630999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,147:147:99:5282,394,0
4    187629140    rs367863    G    C    4473.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5654;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_AMINO_ACID_CHANGE=F614L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187627717_187630999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,120:120:99:4473,325,0
4    187629497    rs458021    G    A    6446.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4133;MQ=59.07;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=N495;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187627717_187630999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,178:179:99:6447,484,0
4    187629538    rs3733413    C    T    5876.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6154;MQ=59.11;MQ0=0;QD=36.27;SNPEFF_AMINO_ACID_CHANGE=V482I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187627717_187630999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:0,161:162:99:5876,442,0
4    187629770    rs3733414    A    C    5210.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.437;DB;DP=148;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9256;MQ=59.84;MQ0=0;MQRankSum=-1.287;QD=35.21;ReadPosRankSum=1.42;SNPEFF_AMINO_ACID_CHANGE=S404R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_187627717_187630999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260147    GT:AD:DP:GQ:PL    1/1:2,146:148:99:5211,349,0
4    188924979    rs6815391    C    T    51.64    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.296;QD=5.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326866    GT:AD:DP:GQ:PL    0/1:7,3:10:81.64:82,0,233
4    189012456    rs2279548    C    T    320.52    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.356;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=12.82;ReadPosRankSum=-0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326754    GT:AD:DP:GQ:PL    0/1:14,11:25:99:351,0,500
4    189012458    rs2279549    C    A    266.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.049;QD=9.88;ReadPosRankSum=-0.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326754    GT:AD:DP:GQ:PL    0/1:15,12:27:99:297,0,546
4    189012680    rs17881718    G    A    1156.63    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.97;DB;DP=77;Dels=0.0;FS=4.391;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.066;QD=15.02;ReadPosRankSum=1.279;SNPEFF_AMINO_ACID_CHANGE=T337;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_189012427_189013095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512729    GT:AD:DP:GQ:PL    0/1:38,39:77:99:1187,0,1052
4    189012728    rs2279550    G    C    3274.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=34.11;SNPEFF_AMINO_ACID_CHANGE=G321;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_189012427_189013095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512729    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3275,253,0
4    189012809    rs2279551    C    T    1873.81    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.572;DB;DP=130;Dels=0.0;FS=0.678;HRun=0;HaplotypeScore=2.6099;MQ=59.5;MQ0=0;MQRankSum=-0.266;QD=14.41;ReadPosRankSum=0.012;SNPEFF_AMINO_ACID_CHANGE=S294;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_189012427_189013095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512729    GT:AD:DP:GQ:PL    0/1:69,61:130:99:1904,0,1783
4    189018117    rs12500011    G    T    146.02    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=18.25;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511771    GT:AD:DP:GQ:PL    0/1:3,5:8:61.25:176,0,61
4    189018613    rs10004012    A    G    577.21    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=2.9;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.395;QD=19.9;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511771    GT:AD:DP:GQ:PL    0/1:12,17:29:99:607,0,384
4    189022324    rs79698746    C    T    589.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.892;QD=16.84;ReadPosRankSum=0.297;SNPEFF_AMINO_ACID_CHANGE=Q122;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_189022210_189022404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536972    GT:AD:DP:GQ:PL    0/1:15,20:35:99:619,0,450
4    189060610    rs11934889    G    C    229.81    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.076;QD=11.49;ReadPosRankSum=-0.456;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507581    GT:AD:DP:GQ:PL    0/1:11,9:20:99:260,0,381
4    189060739    rs140844112    C    T    1446.20    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.575;DB;DP=99;Dels=0.0;FS=4.139;HRun=0;HaplotypeScore=2.9631;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=14.61;ReadPosRankSum=0.235;SNPEFF_AMINO_ACID_CHANGE=N9;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_189060573_189061120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:53,46:99:99:1476,0,1694
4    189061036    rs76826594    C    T    419.37    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.208;DB;DP=33;Dels=0.0;FS=1.446;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.793;QD=12.71;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=D108;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_189060573_189061120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:17,15:33:99:449,0,536
4    189061169    rs56361162    C    T    193.66    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=24;Dels=0.0;FS=5.653;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.508;QD=8.07;ReadPosRankSum=-0.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:17,7:24:99:224,0,472
4    189061604    rs56412251    C    T    210.67    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.209;QD=14.04;ReadPosRankSum=-0.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:7,8:15:99:241,0,246
4    189061675    rs113738610    A    AT    666.09    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=37;FS=3.456;HRun=2;HaplotypeScore=104.4251;IndelType=I;MQ=60.58;MQ0=0;MQRankSum=0.349;QD=18.0;ReadPosRankSum=-1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:18,19:37:99:705,0,519
4    189061855    rs113538906    G    GA    90.96    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=11;FS=0.0;HRun=10;HaplotypeScore=25.9041;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=8.27;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:6,5:11:93.16:130,0,93
4    189063361    rs61461219    C    CGT    437.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=183.9955;IndelType=I;MQ=49.17;MQ0=0;QD=18.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    1/1:13,8:24:39.07:479,39,0
4    189064828    rs9784562    T    C    539.73    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.293;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.657;QD=16.36;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:14,19:33:99:570,0,486
4    189064952    rs28463290    C    G    1151.30    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=102;Dels=0.0;FS=1.628;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.057;QD=11.29;ReadPosRankSum=-0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:58,44:102:99:1181,0,1804
4    189065104    rs9784566    T    G    256.94    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=17;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.241;QD=15.11;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332517    GT:AD:DP:GQ:PL    0/1:8,9:17:99:287,0,275
4    189659608    rs1461777    A    G    195.74    MQFilter40    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=28;Dels=0.0;FS=1.569;HRun=1;HaplotypeScore=0.0;MQ=38.5;MQ0=3;MQRankSum=-3.093;QD=6.99;ReadPosRankSum=0.794;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-756P10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448646    GT:AD:DP:GQ:PL    0/1:11,17:28:99:226,0,240
4    189660286    rs55726007    G    A    833.09    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.182;DB;DP=65;Dels=0.0;FS=2.132;HRun=0;HaplotypeScore=0.0;MQ=56.15;MQ0=0;MQRankSum=1.397;QD=12.82;ReadPosRankSum=-1.384;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-756P10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448646    GT:AD:DP:GQ:PL    0/1:33,32:65:99:863,0,1131
4    189660773    .    C    A    237.64    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.17;MQ0=0;MQRankSum=-0.533;QD=18.28;ReadPosRankSum=1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-756P10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448646    GT:AD:DP:GQ:PL    0/1:5,8:13:99:268,0,112
4    190394124    rs1840714    C    T    787.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=HSP90AA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506915    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:821,60,0
4    190394821    rs12504268    C    T    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=HSP90AA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378770    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:74,0,31
4    190394938    rs147390696    CAAGAAGAAG    C    439.51    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=123.5951;IndelType=D;MQ=51.37;MQ0=0;MQRankSum=-1.422;QD=33.81;ReadPosRankSum=-0.573;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=HSP90AA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378770    GT:AD:DP:GQ:PL    0/1:4,6:13:99:479,0,146
4    190395072    rs12511992    A    G    721.91    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.561;DB;DP=67;Dels=0.0;FS=3.391;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-0.078;QD=10.77;ReadPosRankSum=0.287;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=HSP90AA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378770    GT:AD:DP:GQ:PL    0/1:39,28:67:99:752,0,1229
4    190873184    rs12649534    A    G    203.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:236,18,0
4    190874045    rs62345266    T    C    52.32    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=17.25;MQ0=3;MQRankSum=0.727;QD=7.47;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    1/1:4,3:7:8.98:84,9,0
4    190874089    rs62345274    A    G    91.70    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=20.68;MQ0=5;MQRankSum=-0.143;QD=5.73;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:10,6:16:86.50:122,0,86
4    190874167    rs11727824    G    A    244.67    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.772;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.4121;MQ=27.81;MQ0=16;MQRankSum=-1.039;QD=3.55;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:46,23:69:99:275,0,741
4    190874183    .    C    A    82.30    MQFilter40;QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=2.124;DP=91;Dels=0.0;FS=11.857;HRun=3;HaplotypeScore=0.0;MQ=27.64;MQ0=22;MQRankSum=-1.887;QD=0.9;ReadPosRankSum=-1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:74,17:91:99:112,0,1151
4    190874234    .    C    T    36.86    MQFilter40;QDFilter2    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.179;DP=123;Dels=0.0;FS=1.573;HRun=0;HaplotypeScore=5.4914;MQ=26.82;MQ0=33;MQRankSum=-2.855;QD=0.3;ReadPosRankSum=-0.077;SNPEFF_AMINO_ACID_CHANGE=P28S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_190874223_190874280;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531991    GT:AD:DP:GQ:PL    0/1:95,28:123:66.85:67,0,1476
4    190874256    .    C    T    211.35    MQFilter40;QDFilter2    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DP=133;Dels=0.0;FS=6.677;HRun=0;HaplotypeScore=11.6133;MQ=25.78;MQ0=37;MQRankSum=-3.894;QD=1.59;ReadPosRankSum=0.149;SNPEFF_AMINO_ACID_CHANGE=T35M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_190874223_190874280;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531991    GT:AD:DP:GQ:PL    0/1:70,63:133:99:241,0,1376
4    190876118    .    G    A    206.41    QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=7.535;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=44.07;MQ0=4;MQRankSum=-8.956;QD=1.84;ReadPosRankSum=-2.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:56,56:112:99:236,0,1701
4    190876160    rs74543744    C    T    286.39    HaplotypeScoreFilter13;MQRankSumFilter12_5;QDFilter2    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.969;DB;DP=236;Dels=0.0;FS=16.515;HRun=3;HaplotypeScore=27.9009;MQ=42.33;MQ0=10;MQRankSum=-12.925;QD=1.21;ReadPosRankSum=3.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:111,125:236:99:316,0,3634
4    190876177    rs80264746    G    C    320.58    HaplotypeScoreFilter13;MQRankSumFilter12_5;QDFilter2    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=5.349;DB;DP=250;DS;Dels=0.0;FS=21.874;HRun=0;HaplotypeScore=102.221;MQ=41.47;MQ0=13;MQRankSum=-12.961;QD=1.28;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:111,127:250:99:351,0,3714
4    190876195    rs7684300    C    T    308.73    HaplotypeScoreFilter13;QDFilter2    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.199;DB;DP=250;DS;Dels=0.0;FS=26.427;HRun=1;HaplotypeScore=85.7504;MQ=41.23;MQ0=11;MQRankSum=-9.868;QD=1.23;ReadPosRankSum=-1.808;SNPEFF_AMINO_ACID_CHANGE=I107;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_190876192_190876306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:149,101:250:99:339,0,3800
4    190876204    rs3207892    G    A    569.04    HaplotypeScoreFilter13    AB=0.502;AC=1;AF=0.50;AN=2;BaseQRankSum=4.395;DB;DP=239;DS;Dels=0.0;FS=39.053;HRun=2;HaplotypeScore=44.5384;MQ=41.98;MQ0=12;MQRankSum=-12.23;QD=2.37;ReadPosRankSum=-2.233;SNPEFF_AMINO_ACID_CHANGE=K110;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_190876192_190876306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:107,106:239:99:599,0,3586
4    190876218    .    A    AAT    50.21    QDFilter2    AB=0.965;AC=1;AF=0.50;AN=2;BaseQRankSum=4.133;DP=163;DS;FS=0.0;HRun=0;HaplotypeScore=1243.2189;IndelType=I;MQ=41.51;MQ0=11;MQRankSum=-5.127;QD=0.2;ReadPosRankSum=2.528;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_4_190876192_190876306;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:241,9:163:89.24:89,0,5334
4    190876242    rs1061653    G    A    1297.52    MQFilter40    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.998;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.2455;MQ=39.75;MQ0=13;MQRankSum=-11.852;QD=5.19;ReadPosRankSum=-2.341;SNPEFF_AMINO_ACID_CHANGE=G123E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_190876192_190876306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:85,164:250:99:1328,0,2700
4    190876319    rs77450681    A    T    689.17    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=2.364;DB;DP=183;DS;Dels=0.0;FS=18.92;HRun=2;HaplotypeScore=5.5321;MQ=44.43;MQ0=9;MQRankSum=-8.472;QD=3.77;ReadPosRankSum=-3.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533157    GT:AD:DP:GQ:PL    0/1:101,81:183:99:719,0,3099
4    190878463    rs62345288    T    G    1272.69    HaplotypeScoreFilter13;MQFilter40    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=1.19;DB;DP=125;Dels=0.0;FS=2.075;HRun=0;HaplotypeScore=16.5833;MQ=36.83;MQ0=13;MQRankSum=-3.126;QD=10.18;ReadPosRankSum=0.399;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533157    GT:AD:DP:GQ:PL    0/1:62,63:125:99:1303,0,1263
4    190878485    rs62345289    G    A    1358.17    MQFilter40    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=4.617;DB;DP=156;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.4446;MQ=36.14;MQ0=20;MQRankSum=-3.631;QD=8.71;ReadPosRankSum=2.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533157    GT:AD:DP:GQ:PL    0/1:83,73:156:99:1388,0,1787
4    190878506    rs12643923    C    T    1408.55    MQFilter40    AB=0.317;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.698;DB;DP=167;Dels=0.0;FS=20.207;HRun=1;HaplotypeScore=10.2269;MQ=36.86;MQ0=23;MQRankSum=-8.711;QD=8.43;ReadPosRankSum=-0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533157    GT:AD:DP:GQ:PL    0/1:53,114:167:99:1439,0,1580
4    190878538    rs34697501    A    AT    332.97    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=5.01;DB;DP=97;FS=10.066;HRun=3;HaplotypeScore=537.649;IndelType=I;MQ=40.1;MQ0=28;MQRankSum=-6.003;QD=2.15;ReadPosRankSum=-0.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533157    GT:AD:DP:GQ:PL    0/1:91,64:97:99:372,0,2232
4    190878595    .    T    C    857.19    HaplotypeScoreFilter13;MQFilter40    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.174;DP=250;DS;Dels=0.0;FS=11.309;HRun=0;HaplotypeScore=49.0105;MQ=35.23;MQ0=38;MQRankSum=5.723;QD=3.43;ReadPosRankSum=-1.678;SNPEFF_AMINO_ACID_CHANGE=C159R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_190878553_190878657;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:205,45:250:99:887,0,3984
4    190878597    rs62345290    C    T    1904.91    HaplotypeScoreFilter13;MQFilter40    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.87;DB;DP=249;DS;Dels=0.0;FS=1.229;HRun=0;HaplotypeScore=47.0135;MQ=35.06;MQ0=39;MQRankSum=-6.033;QD=7.65;ReadPosRankSum=0.384;SNPEFF_AMINO_ACID_CHANGE=C159;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_4_190878553_190878657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226798    GT:AD:DP:GQ:PL    0/1:126,123:249:99:1935,0,2950
4    190878661    rs62345291    A    T    1265.72    HaplotypeScoreFilter13;MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.106;DB;DP=168;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=32.288;MQ=36.93;MQ0=21;MQRankSum=-2.915;QD=7.53;ReadPosRankSum=-0.982;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531991    GT:AD:DP:GQ:PL    0/1:95,73:168:99:1296,0,2065
4    190878759    rs11490092    C    G    181.93    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.256;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6695;MQ=37.71;MQ0=7;MQRankSum=-3.055;QD=4.23;ReadPosRankSum=-0.768;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531991    GT:AD:DP:GQ:PL    0/1:24,18:43:99:212,0,615
4    190878814    rs140266155    C    T    80.02    MQFilter40    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.142;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.7978;MQ=34.81;MQ0=5;MQRankSum=-1.066;QD=2.76;ReadPosRankSum=1.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531991    GT:AD:DP:GQ:PL    0/1:20,9:29:99:110,0,467
4    190878827    rs2293867    T    G    272.88    MQFilter40    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=1.637;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=34.24;MQ0=4;MQRankSum=-3.775;QD=10.11;ReadPosRankSum=-2.506;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531991    GT:AD:DP:GQ:PL    0/1:7,20:27:99:303,0,226
4    190878855    rs74198508    G    C    70.64    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=40.96;MQ0=2;MQRankSum=-3.016;QD=4.71;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531991    GT:AD:DP:GQ:PL    0/1:7,8:15:99:101,0,259
4    190878904    rs77178673    C    T    87.88    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=43.94;MQ0=0;MQRankSum=-0.736;QD=14.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531991    GT:AD:DP:GQ:PL    0/1:1,5:6:23.54:118,0,24
4    190894246    rs78999352    T    C    156.69    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=27.47;MQ0=1;MQRankSum=1.246;QD=13.06;ReadPosRankSum=-2.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MLLT10P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506434    GT:AD:DP:GQ:PL    0/1:5,7:12:64.49:187,0,64
4    190894281    rs113906052    C    T    48.57    HaplotypeScoreFilter13;MQFilter40    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.51;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=13.6205;MQ=28.3;MQ0=4;MQRankSum=0.623;QD=2.31;ReadPosRankSum=1.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MLLT10P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506434    GT:AD:DP:GQ:PL    0/1:17,4:21:78.56:79,0,262
4    190894285    rs79211534    G    A    193.20    MQFilter40    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.156;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.8215;MQ=28.3;MQ0=4;MQRankSum=-0.251;QD=9.2;ReadPosRankSum=1.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MLLT10P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506434    GT:AD:DP:GQ:PL    0/1:8,13:21:99:223,0,118
4    190894293    rs76773061    C    A    193.20    MQFilter40    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.3;MQ0=4;MQRankSum=0.251;QD=9.2;ReadPosRankSum=2.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MLLT10P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506434    GT:AD:DP:GQ:PL    0/1:8,13:21:99:223,0,121
4    190894337    rs62346966    C    G    114.19    MQFilter40    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=10;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=28.13;MQ0=3;MQRankSum=-0.742;QD=11.42;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MLLT10P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506434    GT:AD:DP:GQ:PL    0/1:1,9:10:24.21:144,0,24
4    190894427    rs62346967    G    A    46.53    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=33.38;MQ0=1;MQRankSum=-0.727;QD=9.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MLLT10P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506434    GT:AD:DP:GQ:PL    0/1:1,4:5:29.22:77,0,29
4    190905235    rs9884229    G    C    122.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AF146191.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408788    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
4    190905922    .    G    A    30.49    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.98;MQ0=0;MQRankSum=-0.231;QD=2.35;ReadPosRankSum=-1.774;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AF146191.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408788    GT:AD:DP:GQ:PL    0/1:9,4:13:60.48:60,0,222
4    190906025    rs66954538    G    A    75.53    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.264;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.95;MQ0=0;MQRankSum=-2.899;QD=4.2;ReadPosRankSum=0.685;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AF146191.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408788    GT:AD:DP:GQ:PL    0/1:13,5:18:99:106,0,418
4    190947451    rs140385360    C    T    663.08    MQFilter40    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=24.03;MQ0=8;MQRankSum=1.944;QD=10.69;ReadPosRankSum=-1.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378763    GT:AD:DP:GQ:PL    0/1:23,39:62:99:693,0,359
5    140532    rs12516846    T    C    44.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=8.9;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=V37A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140373_140831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:2,3:5:69.84:74,0,70
5    140636    rs12523402    G    A    141.96    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=17.74;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=A72T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140373_140831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:3,5:8:85.87:172,0,86
5    140788    rs12516245    A    G    272.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.76;QD=12.98;ReadPosRankSum=-0.76;SNPEFF_AMINO_ACID_CHANGE=P122;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140373_140831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:9,12:21:99:303,0,269
5    143041    rs11954199    T    A    292.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.381;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.84;MQ0=0;MQRankSum=0.34;QD=14.62;ReadPosRankSum=-1.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:10,10:20:99:322,0,350
5    143197    rs11949577    G    A    1818.64    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=4.302;DB;DP=142;Dels=0.0;FS=8.427;HRun=0;HaplotypeScore=2.835;MQ=59.48;MQ0=0;MQRankSum=2.506;QD=12.81;ReadPosRankSum=-0.651;SNPEFF_AMINO_ACID_CHANGE=G149S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_143162_143371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:73,68:142:99:1849,0,1804
5    143534    rs13436090    G    A    662.37    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=38;Dels=0.0;FS=5.874;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=-0.302;QD=17.43;ReadPosRankSum=-0.207;SNPEFF_AMINO_ACID_CHANGE=R134H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_143495_143618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502646    GT:AD:DP:GQ:PL    0/1:14,24:38:99:692,0,407
5    155137    rs11745772    G    A    250.99    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=4.561;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.511;QD=13.21;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:10,9:19:99:281,0,353
5    155367    rs9312845    C    T    539.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.509;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8997;MQ=60.0;MQ0=0;MQRankSum=-1.137;QD=19.25;ReadPosRankSum=0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:12,16:28:99:569,0,412
5    155629    rs9312850    C    G    312.22    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.18;QD=22.3;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:3,11:14:88.43:342,0,88
5    155671    rs10076077    C    T    118.39    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=19.73;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:148,0,27
5    156180    rs6554829    G    A    1364.80    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=78;Dels=0.0;FS=1.886;HRun=0;HaplotypeScore=1.7552;MQ=59.41;MQ0=0;MQRankSum=-1.746;QD=17.5;ReadPosRankSum=-2.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:31,47:78:99:1395,0,904
5    156287    rs6554830    G    A    515.23    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.469;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=0.27;QD=14.72;ReadPosRankSum=-0.198;SNPEFF_AMINO_ACID_CHANGE=A328;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156186_156325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502646    GT:AD:DP:GQ:PL    0/1:12,23:35:99:545,0,388
5    163205    rs3810870    G    C    73.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.31;MQ0=0;MQRankSum=1.517;QD=8.13;ReadPosRankSum=1.221;SNPEFF_AMINO_ACID_CHANGE=A650;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162837_163663;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:6,3:9:99:103,0,105
5    163260    rs29674    A    C    339.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.31;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=T669P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162837_163663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:373,30,0
5    163266    rs3810867    C    G    174.37    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.06;MQ0=0;MQRankSum=0.811;QD=13.41;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=R671G;SNPEFF_CODON_CHANGE=Cgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162837_163663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    0/1:7,6:13:99:204,0,197
5    163769    rs29675    G    A    87.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
5    169409    rs79806378    T    C    1254.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1288,99,0
5    170920    rs72720467    C    T    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
5    171298    rs74765264    C    T    670.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:704,51,0
5    171569    rs4956981    T    C    287.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:320,24,0
5    171643    rs13171103    C    G    129.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
5    172764    rs72720470    G    T    80.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
5    173258    rs6893369    A    G    586.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:620,45,0
5    181463    rs7717734    T    C    212.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
5    181660    rs7717970    T    G    2553.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8455;MQ=59.1;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=G1122;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_181629_181790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2586,202,0
5    181762    rs11133847    A    G    3029.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.53;MQ0=0;QD=30.91;SNPEFF_AMINO_ACID_CHANGE=R1156;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_181629_181790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3063,232,0
5    182291    rs11747660    A    G    1861.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.68;MQ0=0;MQRankSum=1.439;QD=31.55;ReadPosRankSum=0.734;SNPEFF_AMINO_ACID_CHANGE=L1223;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_182119_190085;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283426    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1894,107,0
5    192467    rs78454293    G    A    146.86    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.63;MQ0=0;MQRankSum=-0.537;QD=8.64;ReadPosRankSum=-1.025;SNPEFF_AMINO_ACID_CHANGE=A272T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_191626_192552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC14B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328278    GT:AD:DP:GQ:PL    0/1:10,7:17:99:177,0,247
5    195318    rs6886707    T    C    3113.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DB;DP=103;Dels=0.0;FS=3.195;HRun=1;HaplotypeScore=4.1408;MQ=59.1;MQ0=0;MQRankSum=-1.698;QD=30.23;ReadPosRankSum=0.84;SNPEFF_AMINO_ACID_CHANGE=A465;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_194823_195468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC14B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328278    GT:AD:DP:GQ:PL    1/1:1,102:103:99:3147,234,0
5    223415    rs6874572    C    T    163.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=27.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264932    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
5    224397    rs35947614    A    G    3737.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.787;MQ=58.79;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264932    GT:AD:DP:GQ:PL    1/1:0,104:105:99:3737,289,0
5    225941    rs59452511    C    T    1444.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.54;MQ0=0;QD=36.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502379    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1477,114,0
5    230980    rs2288461    A    G    1315.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.53;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264932    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1349,99,0
5    231111    rs1126417    T    C    1540.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=29.63;SNPEFF_AMINO_ACID_CHANGE=P152;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_231034_231115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327872    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1574,120,0
5    235548    rs10060259    T    C    574.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506138    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:608,48,0
5    254442    rs142448063    C    T    834.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.43;MQ0=7;QD=18.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505555    GT:AD:DP:GQ:PL    1/1:5,39:44:87.10:867,87,0
5    272694    rs147791113    C    G    122.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.13;MQ0=5;QD=10.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264933    GT:AD:DP:GQ:PL    1/1:2,10:12:17.97:156,18,0
5    304462    rs72541621    C    T    812.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.88;MQ0=11;QD=21.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    1/1:5,32:37:72.17:845,72,0
5    311478    rs2244029    T    C    927.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=I144;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_311408_311517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507528    GT:AD:DP:GQ:PL    1/1:0,29:30:75.21:960,75,0
5    314329    rs76740326    C    T    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505526    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
5    413428    rs3215229    AT    A    239.57    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=2.157;DB;DP=32;FS=0.0;HRun=11;HaplotypeScore=106.6199;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=-0.498;QD=7.49;ReadPosRankSum=-0.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    0/1:17,15:32:99:279,0,390
5    413591    rs11744075    G    A    210.74    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=19;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.844;QD=11.09;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    0/1:10,9:19:99:241,0,341
5    413594    rs2261659    G    C    237.77    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.694;QD=12.51;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    0/1:10,9:19:99:268,0,346
5    422752    rs10072668    T    C    313.67    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.936;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=14.26;ReadPosRankSum=-2.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    0/1:10,12:22:99:344,0,312
5    422955    rs2292596    C    G    143.86    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.544;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.379;QD=5.75;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=P189A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_422844_422973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    0/1:17,8:25:99:174,0,475
5    423906    rs55932239    G    A    99.27    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.278;QD=8.27;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510400    GT:AD:DP:GQ:PL    0/1:7,5:12:99:129,0,213
5    427554    rs77621420    A    AG    163.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=16.089;IndelType=I;MQ=52.63;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510400    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
5    428231    rs12188678    T    C    66.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.406;QD=11.02;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510910    GT:AD:DP:GQ:PL    0/1:3,3:6:96.10:96,0,97
5    428236    rs12188164    C    A    74.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.406;QD=12.39;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510910    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,99
5    433952    rs2672724    C    T    114.95    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.16;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    0/1:1,5:6:27.18:145,0,27
5    442438    rs1056465    T    A    170.09    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.752;DB;DP=15;Dels=0.0;FS=2.447;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.099;QD=11.34;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    0/1:8,7:15:99:200,0,252
5    442571    rs56146525    A    C    397.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.454;DB;DP=26;Dels=0.0;FS=3.862;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=15.3;ReadPosRankSum=0.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316418    GT:AD:DP:GQ:PL    0/1:14,12:26:99:428,0,405
5    446577    rs12654521    G    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315013    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
5    453567    rs2672722    G    A    210.60    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=17;Dels=0.0;FS=7.911;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=12.39;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=E149;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_453485_454166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315013    GT:AD:DP:GQ:PL    0/1:10,7:17:99:241,0,323
5    456915    rs2721010    A    G    170.19    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=10.01;ReadPosRankSum=0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315013    GT:AD:DP:GQ:PL    0/1:10,7:17:99:200,0,325
5    457249    rs2672755    G    T    105.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.14;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315013    GT:AD:DP:GQ:PL    0/1:3,4:7:98.94:136,0,99
5    457955    rs2251843    A    G    542.07    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.081;DB;DP=43;Dels=0.0;FS=4.48;HRun=0;HaplotypeScore=1.864;MQ=58.48;MQ0=0;MQRankSum=-0.126;QD=12.61;ReadPosRankSum=-1.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315013    GT:AD:DP:GQ:PL    0/1:22,21:43:99:572,0,638
5    459341    rs34067680    AT    A    221.54    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=3.11;DB;DP=19;FS=0.0;HRun=10;HaplotypeScore=87.5578;IndelType=D;MQ=56.86;MQ0=0;MQRankSum=1.318;QD=11.66;ReadPosRankSum=0.685;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315013    GT:AD:DP:GQ:PL    0/1:7,12:19:99:261,0,115
5    459772    rs2561663    A    G    69.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510028    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:101,9,0
5    459793    rs2561664    T    C    78.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510028    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
5    462465    rs890972    C    A    578.54    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.362;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=13.77;ReadPosRankSum=-1.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2228K2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510714    GT:AD:DP:GQ:PL    0/1:22,20:42:99:609,0,765
5    462556    rs2081942    G    A    205.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.33;MQ0=0;MQRankSum=-1.739;QD=14.71;ReadPosRankSum=-0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2228K2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510714    GT:AD:DP:GQ:PL    0/1:6,8:14:99:236,0,203
5    464153    rs2561667    C    T    69.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.55;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2228K2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510714    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,103
5    464177    rs2434695    C    G    104.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=10.4;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2228K2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510714    GT:AD:DP:GQ:PL    0/1:4,6:10:99:134,0,139
5    466075    rs10474780    G    C    114.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2228K2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342584    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
5    466113    rs10475262    A    G    82.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2228K2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342584    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
5    466125    rs9313086    T    G    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2228K2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342584    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
5    466811    rs2434697    T    C    462.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=35.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2228K2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342584    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:495,39,0
5    475104    rs2247114    A    G    443.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.74;SNPEFF_AMINO_ACID_CHANGE=C790R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_474998_475247;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000514375    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:477,39,0
5    475342    rs56093108    A    G    32.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.358;QD=5.48;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509294    GT:AD:DP:GQ:PL    0/1:4,2:6:62.84:63,0,109
5    475346    rs2247107    A    T    81.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9996;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=16.22;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509294    GT:AD:DP:GQ:PL    0/1:1,4:5:28.61:111,0,29
5    475408    rs11745923    T    G    40.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=10.15;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509294    GT:AD:DP:GQ:PL    0/1:1,3:4:17.66:71,0,18
5    476353    rs2230437    C    T    359.20    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=1.922;DB;DP=41;Dels=0.0;FS=3.398;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.581;QD=8.76;ReadPosRankSum=-0.283;SNPEFF_AMINO_ACID_CHANGE=A668;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_476317_476493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514375    GT:AD:DP:GQ:PL    0/1:28,13:41:99:389,0,847
5    476530    rs2244240    C    G    1152.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509294    GT:AD:DP:GQ:PL    1/1:0,36:36:93.28:1186,93,0
5    476848    rs890976    C    T    70.23    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515601    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,144
5    476910    rs890977    T    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515601    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
5    476969    rs890978    C    T    33.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.26;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515601    GT:AD:DP:GQ:PL    0/1:1,2:3:25.33:64,0,25
5    477019    rs2244223    T    C    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515601    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
5    477253    rs890979    A    G    36.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507407    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:67,0,32
5    477303    rs890980    A    G    108.32    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.66;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507407    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:138,0,27
5    477634    rs4334924    G    A    61.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.727;QD=15.48;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507407    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:92,0,30
5    479746    rs890985    C    G    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507407    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    479879    rs5865334    G    GC    1107.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=4;HaplotypeScore=161.652;IndelType=I;MQ=60.0;MQ0=0;QD=39.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264938    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1150,84,0
5    479905    rs890986    A    C    1133.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264938    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1167,90,0
5    481610    rs6872510    T    C    1600.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264938    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1633,123,0
5    482186    rs9885312    C    G    145.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_AMINO_ACID_CHANGE=G472;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_482183_482245;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514375    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
5    482653    rs3777230    T    C    860.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264938    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:894,69,0
5    488298    rs2303736    A    G    288.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264938    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:322,27,0
5    488310    rs2303737    C    T    305.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=57.39;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264938    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:338,27,0
5    619022    rs1617985    C    T    548.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:582,42,0
5    619333    rs1709531    T    C    1137.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1170,87,0
5    620486    rs16900931    G    T    138.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=13.87;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,180
5    624587    rs62001006    C    T    432.74    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.604;DB;DP=32;Dels=0.0;FS=9.138;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.755;QD=13.52;ReadPosRankSum=-0.944;SNPEFF_AMINO_ACID_CHANGE=D135;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_624586_624694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    0/1:15,17:32:99:463,0,456
5    637443    rs1709554    A    G    142.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
5    639231    rs12522955    C    A    416.12    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=41;Dels=0.0;FS=1.289;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.839;QD=10.15;ReadPosRankSum=-0.146;SNPEFF_AMINO_ACID_CHANGE=P412T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_639204_639339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    0/1:21,20:41:99:446,0,568
5    640404    rs141837757    CCCTA    C    275.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=42.5839;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=0.248;QD=30.64;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    0/1:3,6:9:99:315,0,216
5    640728    rs56325086    G    A    265.21    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=14;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.071;QD=18.94;ReadPosRankSum=-1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    0/1:4,10:14:88.14:295,0,88
5    644552    rs4957080    G    T    839.95    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=5.294;DB;DP=64;Dels=0.0;FS=9.417;HRun=1;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=-0.989;QD=13.12;ReadPosRankSum=-2.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264935    GT:AD:DP:GQ:PL    0/1:34,30:64:99:870,0,1053
5    665280    rs1697963    T    C    1164.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=S199;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_660883_665411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360578    GT:AD:DP:GQ:PL    1/1:0,37:37:96.27:1198,96,0
5    665295    rs61731455    A    G    481.01    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.192;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.113;QD=14.58;ReadPosRankSum=0.153;SNPEFF_AMINO_ACID_CHANGE=D194;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_660883_665411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360578    GT:AD:DP:GQ:PL    0/1:14,19:33:99:511,0,428
5    666039    .    G    C    44.64    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.6651;MQ=41.96;MQ0=0;MQRankSum=-1.754;QD=4.96;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360578    GT:AD:DP:GQ:PL    0/1:5,3:9:74.63:75,0,78
5    666323    rs1697964    A    G    241.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=26.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360578    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:275,21,0
5    677662    rs436539    G    A    73.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=14.66;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360578    GT:AD:DP:GQ:PL    0/1:2,3:5:24.94:103,0,25
5    677718    rs392088    G    A    318.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360578    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
5    677741    rs7713958    C    G    239.66    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=21.79;ReadPosRankSum=2.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360578    GT:AD:DP:GQ:PL    0/1:3,8:11:83.13:270,0,83
5    678062    rs450628    A    G    356.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=27.46;SNPEFF_AMINO_ACID_CHANGE=A38;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_677865_678179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360578    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:390,30,0
5    741736    rs61128505    G    T    113.28    MQFilter40;QDFilter2    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.93;MQ0=35;MQRankSum=-0.116;QD=1.8;ReadPosRankSum=0.302;SNPEFF_AMINO_ACID_CHANGE=A303D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_741709_741743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382776    GT:AD:DP:GQ:PL    0/1:35,28:63:99:143,0,302
5    756307    rs367198    T    C    62.39    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=27.89;MQ0=0;MQRankSum=-0.922;QD=7.8;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382776    GT:AD:DP:GQ:PL    0/1:4,4:8:92.38:92,0,111
5    766910    rs1809933    C    T    360.18    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=24;Dels=0.0;FS=11.29;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.463;QD=15.01;ReadPosRankSum=0.348;SNPEFF_AMINO_ACID_CHANGE=R42Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_766813_767034;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382776    GT:AD:DP:GQ:PL    0/1:11,13:24:99:390,0,348
5    766939    rs4957103    G    A    391.14    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.223;DB;DP=31;Dels=0.0;FS=3.352;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.22;QD=12.62;ReadPosRankSum=1.621;SNPEFF_AMINO_ACID_CHANGE=N32;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_766813_767034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC11B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382776    GT:AD:DP:GQ:PL    0/1:18,13:31:99:421,0,508
5    767033    rs1809932    A    C    282.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=28;Dels=0.0;FS=1.485;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=10.08;ReadPosRankSum=0.37;SNPEFF_AMINO_ACID_CHANGE=M1R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_5_766813_767034;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC11B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000382776    GT:AD:DP:GQ:PL    0/1:16,12:28:99:312,0,531
5    767503    rs391675    C    T    208.26    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.269;DB;DP=22;Dels=0.0;FS=11.029;HRun=1;HaplotypeScore=0.734;MQ=51.92;MQ0=0;MQRankSum=-2.337;QD=9.47;ReadPosRankSum=1.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424784    GT:AD:DP:GQ:PL    0/1:13,9:22:99:238,0,469
5    767510    rs440240    G    A    217.28    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.337;DB;DP=22;Dels=0.0;FS=7.168;HRun=0;HaplotypeScore=0.0;MQ=51.92;MQ0=0;MQRankSum=-2.204;QD=9.88;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424784    GT:AD:DP:GQ:PL    0/1:13,9:22:99:247,0,376
5    767588    rs507953    G    A    34.05    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.345;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=54.57;MQ0=0;MQRankSum=-2.691;QD=2.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424784    GT:AD:DP:GQ:PL    0/1:14,3:17:64.05:64,0,427
5    796041    rs144777213    C    T    1497.67    HaplotypeScoreFilter13    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.847;DB;DP=210;Dels=0.0;FS=12.381;HRun=0;HaplotypeScore=205.6601;MQ=51.24;MQ0=1;MQRankSum=-1.441;QD=7.13;ReadPosRankSum=-2.998;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507800    GT:AD:DP:GQ:PL    0/1:134,76:210:99:1528,0,3813
5    796047    rs33929417    CTG    C    4130.75    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.557;DB;DP=211;FS=4.145;HRun=0;HaplotypeScore=2526.1595;IndelType=D;MQ=50.96;MQ0=1;MQRankSum=3.779;QD=19.39;ReadPosRankSum=3.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507800    GT:AD:DP:GQ:PL    0/1:116,97:211:99:4131,0,967
5    796051    rs62330166    G    A    2894.73    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=-4.53;DB;DP=208;Dels=0.0;FS=4.901;HRun=0;HaplotypeScore=243.029;MQ=50.98;MQ0=1;MQRankSum=-2.663;QD=13.92;ReadPosRankSum=0.483;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507800    GT:AD:DP:GQ:PL    1/1:116,91:208:99:2928,207,0
5    796053    .    GCT    G    3570.11    PASS    AB=0.668;AC=1;AF=0.50;AN=2;BaseQRankSum=9.43;DP=205;FS=11.768;HRun=0;HaplotypeScore=2602.808;IndelType=D;MQ=50.83;MQ0=1;MQRankSum=-3.696;QD=17.25;ReadPosRankSum=2.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507800    GT:AD:DP:GQ:PL    0/1:104,103:205:99:3570,0,3158
5    796064    rs62330167    T    C    2197.19    HaplotypeScoreFilter13    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.939;DB;DP=201;Dels=0.0;FS=0.529;HRun=1;HaplotypeScore=16.1723;MQ=50.7;MQ0=0;MQRankSum=-2.245;QD=10.93;ReadPosRankSum=3.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507800    GT:AD:DP:GQ:PL    0/1:91,110:201:99:2227,0,2019
5    801362    rs3867415    A    G    623.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.81;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283441    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:657,51,0
5    834075    rs1260864    G    A    73.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.35;MQ0=4;QD=9.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511193    GT:AD:DP:GQ:PL    1/1:3,5:8:12:106,12,0
5    840506    rs7701283    C    T    106.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.103;QD=10.63;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=T83;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_839557_840765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511539    GT:AD:DP:GQ:PL    0/1:5,5:10:99:136,0,174
5    840888    rs57285777    T    C    161.27    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.063;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9905;MQ=60.0;MQ0=0;MQRankSum=-0.147;QD=4.74;ReadPosRankSum=-0.819;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503880    GT:AD:DP:GQ:PL    0/1:25,9:34:99:191,0,874
5    840928    rs3817055    C    T    113.28    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.473;QD=7.08;ReadPosRankSum=2.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503880    GT:AD:DP:GQ:PL    0/1:11,5:16:99:143,0,340
5    847437    .    G    T    144.90    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.27;MQ0=2;MQRankSum=2.426;QD=10.35;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=BRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493082    GT:AD:DP:GQ:PL    0/1:8,6:14:99:175,0,128
5    878525    rs508016    T    A    106.23    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.262;DB;DP=45;Dels=0.0;FS=3.624;HRun=1;HaplotypeScore=0.0;MQ=53.92;MQ0=1;MQRankSum=-3.724;QD=2.36;ReadPosRankSum=0.262;SNPEFF_AMINO_ACID_CHANGE=M290L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_878470_878602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=BRD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388890    GT:AD:DP:GQ:PL    0/1:35,10:45:99:136,0,1208
5    1032032    rs4975577    T    C    33.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.41;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274150    GT:AD:DP:GQ:PL    0/1:2,2:4:63.63:64,0,73
5    1034246    rs4975576    A    T    42.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274150    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:73,0,22
5    1036521    rs60180971    G    A    242.28    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.912;QD=12.11;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519933    GT:AD:DP:GQ:PL    0/1:11,9:20:99:272,0,336
5    1038526    rs3889678    A    G    120.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.2;MQ0=0;QD=24.11;SNPEFF_AMINO_ACID_CHANGE=T104;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1038339_1038721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382730    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
5    1039003    rs60241368    C    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274150    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    1052360    rs3810854    C    T    142.77    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.759;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=58.63;MQ0=0;MQRankSum=0.452;QD=8.4;ReadPosRankSum=0.352;SNPEFF_AMINO_ACID_CHANGE=A255T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1052322_1052447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343658    GT:AD:DP:GQ:PL    0/1:11,6:17:99:173,0,376
5    1053216    rs2241601    G    C    34.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514994    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
5    1053341    rs2241602    A    G    78.73    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.31;MQ0=0;MQRankSum=-1.92;QD=9.84;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514994    GT:AD:DP:GQ:PL    0/1:3,5:8:93.05:109,0,93
5    1053396    rs2241603    C    G    54.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-0.727;QD=5.45;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514994    GT:AD:DP:GQ:PL    0/1:5,5:10:27.28:84,0,27
5    1057405    rs2241605    G    A    172.14    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=24.59;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:1,6:7:12.37:202,0,12
5    1057615    rs2241606    A    G    1992.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.13;SNPEFF_AMINO_ACID_CHANGE=S999;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1057586_1057764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2025,162,0
5    1057782    rs12108965    T    C    617.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.15;MQ0=0;QD=16.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,37:37:63.08:651,63,0
5    1057890    rs2241607    G    A    67.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=11.21;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:3,3:6:95.68:97,0,96
5    1057960    rs35791340    C    T    40.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.44;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:72,6,0
5    1060366    rs4975699    C    G    516.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:549,48,0
5    1060379    rs35661060    G    A    275.29    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.069;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.63;MQ0=0;MQRankSum=-0.433;QD=16.19;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:8,9:17:99:305,0,257
5    1060400    rs4975568    G    A    1019.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.14;MQ0=0;QD=37.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,27:27:81.24:1053,81,0
5    1060634    rs4246750    C    T    509.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:542,42,0
5    1060654    rs4246749    G    A    307.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:341,30,0
5    1063998    rs7722287    G    A    450.27    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=54.5;MQ0=0;MQRankSum=0.231;QD=7.9;ReadPosRankSum=-0.197;SNPEFF_AMINO_ACID_CHANGE=Y900;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1063959_1064090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:37,20:57:99:480,0,1014
5    1065290    rs4362981    A    G    194.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.061;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.9642;MQ=40.41;MQ0=0;MQRankSum=-0.825;QD=16.21;ReadPosRankSum=1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:2,10:12:21.03:227,21,0
5    1065298    rs55643147    GAGGGGACACTGAGGAGACACAC    G    1387.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=332.3935;IndelType=D;MQ=40.3;MQ0=0;QD=106.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:1429,36,0
5    1065399    rs737154    C    T    214.11    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.473;DB;DP=18;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=0.734;MQ=49.49;MQ0=0;MQRankSum=0.893;QD=11.89;ReadPosRankSum=1.418;SNPEFF_AMINO_ACID_CHANGE=V812;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1065398_1065593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:8,9:18:99:244,0,206
5    1065514    rs56350427    A    G    213.35    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.574;DB;DP=31;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.0;MQ=56.32;MQ0=0;MQRankSum=-0.022;QD=6.88;ReadPosRankSum=-0.066;SNPEFF_AMINO_ACID_CHANGE=M774T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1065398_1065593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:21,10:31:99:243,0,580
5    1065689    rs13186367    C    T    165.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
5    1073689    rs10780095    C    T    374.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504576    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:407,30,0
5    1074818    rs41280366    C    T    41.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510943    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:72,0,36
5    1076128    .    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=70.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510943    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    1076706    rs74673540    C    T    55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=9.17;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510943    GT:AD:DP:GQ:PL    0/1:3,3:6:85:85,0,106
5    1078642    rs4975684    C    A    41.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    1078898    rs4975564    A    G    551.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:585,45,0
5    1081668    rs13176210    G    A    430.35    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=24;Dels=0.0;FS=1.851;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.263;QD=17.93;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:10,14:24:99:460,0,314
5    1081702    rs6865765    A    G    485.36    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=37;Dels=0.0;FS=13.888;HRun=3;HaplotypeScore=0.5784;MQ=58.74;MQ0=0;MQRankSum=0.138;QD=13.12;ReadPosRankSum=-0.138;SNPEFF_AMINO_ACID_CHANGE=P429;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1081692_1081859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:16,21:37:99:515,0,502
5    1081767    rs4526148    C    T    440.43    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=41;Dels=0.0;FS=1.281;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.807;QD=10.74;ReadPosRankSum=-0.439;SNPEFF_AMINO_ACID_CHANGE=A408T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1081692_1081859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    0/1:22,19:41:99:470,0,655
5    1085183    rs10866480    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    1094389    rs4975552    T    A    836.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264930    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:870,66,0
5    1208964    rs60992377    T    C    504.25    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.75;DB;DP=28;Dels=0.0;FS=2.764;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.639;QD=18.01;ReadPosRankSum=0.528;SNPEFF_AMINO_ACID_CHANGE=G102;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1208861_1209001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    0/1:8,18:28:99:534,0,247
5    1212178    rs4975632    G    A    34.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
5    1214264    rs6554663    A    G    127.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=12.78;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    0/1:4,6:10:99:158,0,122
5    1216775    rs4975629    A    G    1170.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_AMINO_ACID_CHANGE=T330;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1216673_1216801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,36:36:93.27:1203,93,0
5    1218928    rs6865308    C    T    316.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:349,27,0
5    1219316    rs6554668    C    T    67.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
5    1219859    rs11746371    C    T    512.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:546,39,0
5    1219874    rs6869718    G    A    461.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:494,36,0
5    1221199    rs12513763    T    C    282.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:316,24,0
5    1225564    rs7728646    T    C    430.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:463,36,0
5    1225613    rs7704058    G    A    347.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;QD=28.98;SNPEFF_AMINO_ACID_CHANGE=P7;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1225470_1225752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:381,30,0
5    1225626    rs7728667    T    A    307.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;QD=25.59;SNPEFF_AMINO_ACID_CHANGE=C12S;SNPEFF_CODON_CHANGE=Tgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1225470_1225752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,11:12:27.08:340,27,0
5    1225676    rs33978774    C    T    877.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.06;MQ0=0;QD=35.09;SNPEFF_AMINO_ACID_CHANGE=L28;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1225470_1225752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:910,72,0
5    1225703    rs7724858    A    G    999.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.36;MQ0=0;QD=30.28;SNPEFF_AMINO_ACID_CHANGE=G37;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1225470_1225752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,33:33:81.25:1032,81,0
5    1225801    rs7704363    G    A    894.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.04;MQ0=0;QD=30.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC6A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304460    GT:AD:DP:GQ:PL    1/1:0,29:29:72.22:928,72,0
5    1232240    rs7379178    C    T    79.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=15.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:111,9,0
5    1232491    rs4975623    G    C    297.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:330,24,0
5    1232666    rs4975622    A    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    1232775    rs6858999    T    A    570.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:603,48,0
5    1235939    rs11956561    A    G    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513607    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
5    1240757    rs7447815    C    G    1704.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=Y319*;SNPEFF_CODON_CHANGE=taC/taG;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_5_1240646_1240774;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000324642    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1738,126,0
5    1240848    rs6554684    A    C    631.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=27.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:664,54,0
5    1243009    rs7721679    A    G    896.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:930,72,0
5    1244286    rs7448994    T    C    484.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8321;MQ=53.52;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:518,42,0
5    1244425    rs4073918    C    T    2192.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.154;MQ=59.4;MQ0=0;QD=28.47;SNPEFF_AMINO_ACID_CHANGE=P376L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1244379_1244492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296821    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2225,169,0
5    1255520    rs33954691    G    A    500.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=H1013;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1255402_1255526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TERT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310581    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:533,39,0
5    1260514    rs35311994    C    T    713.75    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.868;DB;DP=44;Dels=0.0;FS=17.562;HRun=0;HaplotypeScore=1.5782;MQ=60.0;MQ0=0;MQRankSum=1.856;QD=16.22;ReadPosRankSum=-0.554;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TERT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503656    GT:AD:DP:GQ:PL    0/1:17,27:44:99:744,0,568
5    1282755    rs79698601    C    G    251.11    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.883;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.795;QD=13.22;ReadPosRankSum=1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TERT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296820    GT:AD:DP:GQ:PL    0/1:9,10:19:99:281,0,234
5    1294086    rs2736098    C    T    94.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.51;SNPEFF_AMINO_ACID_CHANGE=A305;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1293428_1294781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TERT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296820    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
5    1323196    rs410805    T    C    287.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=23.96;ReadPosRankSum=0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508765    GT:AD:DP:GQ:PL    0/1:3,9:12:80.08:318,0,80
5    1334507    rs5865369    GA    G    753.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=9;HaplotypeScore=90.366;IndelType=D;MQ=60.6;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320895    GT:AD:DP:GQ:PL    1/1:4,30:34:87.04:795,87,0
5    1393753    rs11564775    A    G    50.27    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;MQRankSum=0.551;QD=3.14;ReadPosRankSum=1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453492    GT:AD:DP:GQ:PL    0/1:10,6:16:80.27:80,0,276
5    1393878    rs6876890    G    A    345.24    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.481;DB;DP=40;Dels=0.0;FS=3.315;HRun=0;HaplotypeScore=0.8667;MQ=57.09;MQ0=0;MQRankSum=0.344;QD=8.63;ReadPosRankSum=-0.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453492    GT:AD:DP:GQ:PL    0/1:22,18:40:99:375,0,421
5    1394815    rs1042098    A    G    718.40    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.497;DB;DP=61;Dels=0.0;FS=1.108;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.526;QD=11.78;ReadPosRankSum=-0.007;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270349    GT:AD:DP:GQ:PL    0/1:32,29:61:99:748,0,980
5    1409127    rs429699    T    C    541.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=27.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270349    GT:AD:DP:GQ:PL    1/1:0,20:20:45.14:575,45,0
5    1416142    rs40358    C    A    456.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513308    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:489,36,0
5    1420476    rs28382245    C    T    126.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=12.67;ReadPosRankSum=-1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270349    GT:AD:DP:GQ:PL    0/1:5,5:10:99:157,0,181
5    1420588    rs11564758    C    G    945.65    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=71;Dels=0.0;FS=2.38;HRun=0;HaplotypeScore=0.8941;MQ=59.02;MQ0=0;MQRankSum=0.328;QD=13.32;ReadPosRankSum=0.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270349    GT:AD:DP:GQ:PL    0/1:35,36:71:99:976,0,1040
5    1442974    rs2254408    C    A    451.70    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.5;DB;DP=39;Dels=0.0;FS=2.045;HRun=0;HaplotypeScore=6.5646;MQ=59.41;MQ0=0;MQRankSum=0.871;QD=11.58;ReadPosRankSum=0.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270349    GT:AD:DP:GQ:PL    0/1:23,16:39:99:482,0,733
5    1464028    rs6876662    C    T    1237.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    1/1:0,35:36:99:1271,99,0
5    1466686    rs2277008    G    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    1466813    rs2277007    T    C    524.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:558,42,0
5    1467004    rs35452723    A    G    355.91    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=44;Dels=0.0;FS=1.218;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.14;QD=8.09;ReadPosRankSum=1.007;SNPEFF_AMINO_ACID_CHANGE=M427T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1466864_1467005;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    0/1:29,15:44:99:386,0,873
5    1470900    rs2277005    G    A    86.19    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=2.814;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.009;QD=4.79;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    0/1:14,4:18:99:116,0,429
5    1473977    rs27056    A    G    184.16    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=9.69;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    0/1:10,9:19:99:214,0,323
5    1479678    rs27059    G    C    381.10    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.56;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.231;QD=17.32;ReadPosRankSum=-0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514484    GT:AD:DP:GQ:PL    0/1:10,12:22:99:411,0,343
5    1481148    rs78428952    A    C    506.76    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DB;DP=48;Dels=0.0;FS=4.158;HRun=2;HaplotypeScore=0.8667;MQ=59.52;MQ0=0;MQRankSum=2.593;QD=10.56;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514484    GT:AD:DP:GQ:PL    0/1:30,18:48:99:537,0,986
5    1489706    rs2277003    A    G    175.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.0;QD=14.65;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    0/1:3,9:12:86.35:206,0,86
5    1490124    rs10475025    A    C    254.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=18.2;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    0/1:6,8:14:99:285,0,184
5    1490195    rs10475026    A    C    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,68
5    1494909    rs3733796    C    T    279.31    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=58.27;MQ0=0;MQRankSum=0.79;QD=10.34;ReadPosRankSum=1.61;SNPEFF_AMINO_ACID_CHANGE=A133;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1494815_1495029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    0/1:14,11:27:99:309,0,348
5    1501790    rs1979396    T    C    134.43    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.38;QD=10.34;ReadPosRankSum=1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283415    GT:AD:DP:GQ:PL    0/1:8,5:13:99:164,0,237
5    1572275    .    A    G    62.84    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.986;DP=56;Dels=0.0;FS=2.891;HRun=0;HaplotypeScore=0.0;MQ=53.01;MQ0=0;MQRankSum=-5.421;QD=1.12;ReadPosRankSum=-1.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515467    GT:AD:DP:GQ:PL    0/1:42,14:56:92.84:93,0,1533
5    1572289    rs147001297    A    G    79.17    QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.914;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.15;MQ0=0;MQRankSum=-5.124;QD=1.22;ReadPosRankSum=-0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515467    GT:AD:DP:GQ:PL    0/1:49,16:65:99:109,0,1733
5    1572585    rs6554886    A    G    126.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.65;MQ0=0;QD=21.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413529    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:159,12,0
5    1574179    rs11954850    C    T    165.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413529    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
5    1574523    rs146055310    TCCA    T    275.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=27.5681;IndelType=D;MQ=15.35;MQ0=6;QD=14.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413529    GT:AD:DP:GQ:PL    1/1:4,15:6:18.06:318,18,0
5    1576731    rs12520961    C    T    1295.83    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=6.034;DB;DP=119;Dels=0.0;FS=4.133;HRun=0;HaplotypeScore=3.4858;MQ=57.88;MQ0=1;MQRankSum=-0.421;QD=10.89;ReadPosRankSum=-0.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413529    GT:AD:DP:GQ:PL    0/1:73,46:119:99:1326,0,2142
5    1576931    rs12513888    T    C    34.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.77;MQ0=1;MQRankSum=-0.358;QD=5.72;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413529    GT:AD:DP:GQ:PL    0/1:2,4:6:64.33:64,0,71
5    1576932    rs12515724    G    A    33.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.77;MQ0=1;MQRankSum=1.231;QD=5.59;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413529    GT:AD:DP:GQ:PL    0/1:2,4:6:63.55:64,0,73
5    1593326    rs6872202    G    A    285.76    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=35;Dels=0.0;FS=1.373;HRun=1;HaplotypeScore=0.0;MQ=53.71;MQ0=0;MQRankSum=-1.351;QD=8.16;ReadPosRankSum=-1.207;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDHAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436493    GT:AD:DP:GQ:PL    0/1:23,12:35:99:316,0,707
5    1632684    rs149932967    T    C    126.02    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.95;MQ0=1;MQRankSum=-1.495;QD=15.75;ReadPosRankSum=1.495;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-43F13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343123    GT:AD:DP:GQ:PL    0/1:2,6:8:42.39:156,0,42
5    1632687    rs145053090    C    T    124.02    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.95;MQ0=1;MQRankSum=-1.495;QD=15.5;ReadPosRankSum=1.495;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-43F13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343123    GT:AD:DP:GQ:PL    0/1:2,6:8:56.42:154,0,56
5    1632758    rs71597631    C    G    302.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.256;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.71;MQ0=2;MQRankSum=-3.538;QD=10.08;ReadPosRankSum=-1.487;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-43F13.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000507290    GT:AD:DP:GQ:PL    0/1:15,15:30:99:332,0,423
5    1799321    rs2291944    T    C    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382647    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    1801427    rs34372448    C    CG    223.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=48.9128;IndelType=I;MQ=56.04;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505818    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:265,18,0
5    1801689    rs2242412    A    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274137    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
5    1814369    rs3752844    C    T    376.54    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.544;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=0.502;QD=12.55;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274137    GT:AD:DP:GQ:PL    0/1:17,13:30:99:407,0,587
5    1814395    rs71957168    TTGTA    T    1838.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=245.6487;IndelType=D;MQ=55.16;MQ0=0;QD=47.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274137    GT:AD:DP:GQ:PL    1/1:4,35:39:99:1880,105,0
5    1814783    rs4147773    T    C    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.35;SNPEFF_AMINO_ACID_CHANGE=*173R;SNPEFF_CODON_CHANGE=Tga/Cga;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_5_1814453_1814813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000469176    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
5    1879385    rs10475119    G    C    80.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.25;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511126    GT:AD:DP:GQ:PL    0/1:1,3:4:20.46:111,0,20
5    1880865    rs4975753    T    C    501.47    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=44;Dels=0.0;FS=1.503;HRun=1;HaplotypeScore=0.7887;MQ=57.66;MQ0=0;MQRankSum=-0.809;QD=11.4;ReadPosRankSum=-1.061;SNPEFF_AMINO_ACID_CHANGE=P127;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_1880839_1880948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231357    GT:AD:DP:GQ:PL    0/1:24,19:44:99:531,0,749
5    2748650    rs141521193    T    C    264.71    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.321;DB;DP=27;Dels=0.0;FS=3.699;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.949;QD=9.8;ReadPosRankSum=0.814;SNPEFF_AMINO_ACID_CHANGE=N391S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_2748459_2749166;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302057    GT:AD:DP:GQ:PL    0/1:16,11:27:99:295,0,518
5    2754916    .    G    C    145.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=16.11;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515640    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,139
5    3600334    rs844154    T    C    590.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=28.11;SNPEFF_AMINO_ACID_CHANGE=N424;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_3599339_3600374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302006    GT:AD:DP:GQ:PL    1/1:0,21:21:54.14:623,54,0
5    5038650    rs2652067    G    A    321.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2247C11.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508201    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
5    5038977    rs387172    C    A    1180.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2247C11.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507599    GT:AD:DP:GQ:PL    1/1:0,35:35:93.28:1213,93,0
5    5057954    rs187967    T    C    687.86    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.564;DB;DP=44;Dels=0.0;FS=2.623;HRun=1;HaplotypeScore=1.8317;MQ=59.48;MQ0=0;MQRankSum=0.164;QD=15.63;ReadPosRankSum=1.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2247C11.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507599    GT:AD:DP:GQ:PL    0/1:21,23:44:99:718,0,630
5    5140713    rs72647738    C    G    104.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.41;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:2,4:6:59.05:134,0,59
5    5146200    rs1863969    A    T    531.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:564,45,0
5    5146223    rs1871468    G    C    1039.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.95;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:0,32:32:81.24:1072,81,0
5    5146335    rs2086310    C    G    1335.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.33;MQ0=0;QD=31.8;SNPEFF_AMINO_ACID_CHANGE=P90A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_5146243_5146568;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1369,108,0
5    5146377    rs1019747    T    C    770.74    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.055;DB;DP=50;Dels=0.0;FS=2.481;HRun=2;HaplotypeScore=1.1567;MQ=58.13;MQ0=0;MQRankSum=-0.894;QD=15.41;ReadPosRankSum=1.377;SNPEFF_AMINO_ACID_CHANGE=S104P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_5146243_5146568;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:22,27:50:99:801,0,670
5    5146395    rs1863968    A    G    642.16    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.393;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7719;MQ=58.93;MQ0=0;MQRankSum=-1.377;QD=9.88;ReadPosRankSum=-0.085;SNPEFF_AMINO_ACID_CHANGE=M110V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_5146243_5146568;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:37,28:65:99:672,0,1130
5    5186416    rs62339905    T    G    146.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.042;QD=9.79;ReadPosRankSum=1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:1,14:15:15.03:180,15,0
5    5187776    rs1863972    G    A    633.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:666,51,0
5    5189950    rs6859975    G    A    200.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:233,18,0
5    5200220    rs71604111    A    ATC    425.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=86.1126;IndelType=I;MQ=53.95;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:1,7:12:36.07:467,36,0
5    5200281    rs6555335    C    T    844.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=C450;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_5200245_5200382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:0,24:25:72.19:878,72,0
5    5200490    rs17762877    T    C    241    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=12.68;ReadPosRankSum=1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:11,8:19:99:271,0,403
5    5223073    rs12652968    A    G    207.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.237;QD=13.85;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:6,9:15:99:238,0,174
5    5232398    rs2913624    G    A    83.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.61;MQ0=0;MQRankSum=0.061;QD=5.58;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:10,5:15:99:114,0,371
5    5232703    rs2195290    T    C    64.80    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=16;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;MQRankSum=0.529;QD=4.05;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:9,7:16:94.79:95,0,207
5    5235096    rs2913631    A    G    1059.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=57.05;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1093,87,0
5    5236911    rs10537619    GAAACA    G    284.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=40.3103;IndelType=D;MQ=53.82;MQ0=0;QD=47.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:327,18,0
5    5239533    rs2964431    C    A    222.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513709    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:256,21,0
5    5262766    rs34433845    G    A    139.62    PASS    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.426;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=3.58;ReadPosRankSum=-0.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:31,8:39:99:170,0,1032
5    5263101    rs2913656    G    A    82.14    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.53;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:112,0,29
5    5303614    rs11134110    C    T    207.12    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.791;QD=13.81;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274181    GT:AD:DP:GQ:PL    0/1:7,8:15:99:237,0,247
5    5436609    rs2578552    G    A    1883.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0947;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296564    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1917,138,0
5    5437380    rs2578550    C    T    1346.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0947;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296564    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1379,102,0
5    5443179    rs2578554    G    A    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0947;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296564    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
5    5462700    .    A    G    1266.08    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=4.94;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.781;QD=12.54;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=T1085A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_5460549_5465339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0947;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296564    GT:AD:DP:GQ:PL    0/1:51,49:101:99:1296,0,1459
5    6337241    rs4702336    T    A    1079.40    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=73;Dels=0.0;FS=2.17;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.48;QD=14.79;ReadPosRankSum=0.833;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2324F15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502644    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1109,0,1118
5    6378614    rs7723985    G    C    589.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504058    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:622,51,0
5    6491532    rs3733778    T    C    314.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.839;DB;DP=28;Dels=0.0;FS=1.69;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.121;QD=11.23;ReadPosRankSum=0.801;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2QL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399816    GT:AD:DP:GQ:PL    0/1:14,14:28:99:345,0,361
5    6602544    rs2303711    T    C    1722.92    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=120;Dels=0.0;FS=3.431;HRun=0;HaplotypeScore=0.8321;MQ=59.81;MQ0=0;MQRankSum=1.741;QD=14.36;ReadPosRankSum=1.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502932    GT:AD:DP:GQ:PL    0/1:58,62:120:99:1753,0,1748
5    6604205    rs2303709    A    G    212.75    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.538;DB;DP=25;Dels=0.0;FS=2.072;HRun=0;HaplotypeScore=0.9867;MQ=59.07;MQ0=0;MQRankSum=-0.198;QD=8.51;ReadPosRankSum=-0.481;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507888    GT:AD:DP:GQ:PL    0/1:16,9:25:99:243,0,540
5    6604787    rs13181449    C    T    213.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.806;DB;DP=24;Dels=0.0;FS=1.999;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=8.91;ReadPosRankSum=0.521;SNPEFF_AMINO_ACID_CHANGE=T347;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_6604718_6604798;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539938    GT:AD:DP:GQ:PL    0/1:16,8:24:99:244,0,479
5    6605271    rs506416    G    A    456.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.236;QD=9.52;ReadPosRankSum=-1.987;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264670    GT:AD:DP:GQ:PL    0/1:32,16:48:99:487,0,1078
5    6605532    rs2303707    C    A    796.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.496;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=13.28;ReadPosRankSum=-0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264670    GT:AD:DP:GQ:PL    0/1:32,28:60:99:827,0,1006
5    6607125    rs3217325    GAAC    G    201.67    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;FS=5.332;HRun=0;HaplotypeScore=60.1708;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=15.51;ReadPosRankSum=1.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264670    GT:AD:DP:GQ:PL    0/1:8,5:13:99:241,0,552
5    6611757    rs10454287    A    T    228.85    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.914;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.433;QD=13.46;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264670    GT:AD:DP:GQ:PL    0/1:9,8:17:99:259,0,314
5    6611983    rs3733776    C    A    174.63    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=15;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.7887;MQ=55.21;MQ0=0;MQRankSum=0.299;QD=11.64;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264670    GT:AD:DP:GQ:PL    0/1:8,7:15:99:205,0,208
5    6617011    rs6887702    C    A    614.42    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.819;DB;DP=47;Dels=0.0;FS=1.544;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-2.011;QD=13.07;ReadPosRankSum=-0.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505264    GT:AD:DP:GQ:PL    0/1:23,24:47:99:644,0,756
5    6618186    rs10475338    T    C    188.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.966;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;MQRankSum=0.693;QD=7.56;ReadPosRankSum=0.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505264    GT:AD:DP:GQ:PL    0/1:15,10:25:99:219,0,522
5    6620459    rs2288446    A    G    266.20    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=37;Dels=0.0;FS=8.224;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.047;QD=7.19;ReadPosRankSum=0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264670    GT:AD:DP:GQ:PL    0/1:26,11:37:99:296,0,818
5    6623432    rs72333369    G    GA    301.95    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=1.245;DB;DP=33;FS=0.0;HRun=13;HaplotypeScore=203.36;IndelType=I;MQ=57.1;MQ0=0;MQRankSum=-0.731;QD=9.15;ReadPosRankSum=-1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264670    GT:AD:DP:GQ:PL    0/1:15,15:33:99:341,0,188
5    6737571    rs2279657    A    G    62.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=6.21;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230859    GT:AD:DP:GQ:PL    0/1:6,4:10:92.14:92,0,226
5    6737576    rs2279656    G    A    95.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=9.52;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230859    GT:AD:DP:GQ:PL    0/1:6,4:10:99:125,0,217
5    6739039    rs573304    T    G    98.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=1.368;QD=12.29;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515721    GT:AD:DP:GQ:PL    0/1:4,4:8:99:128,0,137
5    6739791    rs419128    G    A    94.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.84;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515721    GT:AD:DP:GQ:PL    0/1:4,4:8:99:125,0,132
5    6744176    rs274672    G    A    133.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230859    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
5    6748518    rs274682    A    G    2669.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230859    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2703,214,0
5    6748659    rs274681    T    C    5168.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8653;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=A264;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_6748577_6748703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230859    GT:AD:DP:GQ:PL    1/1:0,157:157:99:5168,406,0
5    6751426    rs274679    A    C    166.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=2.181;QD=15.13;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505457    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,164
5    7299845    rs17842508    C    T    250.05    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;MQRankSum=1.111;QD=13.16;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500762    GT:AD:DP:GQ:PL    0/1:9,10:19:99:280,0,243
5    7301370    .    C    T    68.27    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.13;MQ0=0;MQRankSum=0.727;QD=17.07;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500762    GT:AD:DP:GQ:PL    1/1:1,3:4:9.02:100,9,0
5    7301374    rs62341806    C    T    45.02    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.13;MQ0=0;MQRankSum=0.727;QD=11.25;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500762    GT:AD:DP:GQ:PL    1/1:1,3:4:9:77,9,0
5    7301375    rs79061216    C    T    44.02    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.95;MQ0=0;MQRankSum=0.731;QD=8.8;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500762    GT:AD:DP:GQ:PL    1/1:1,4:5:8.99:76,9,0
5    7301391    rs112419990    C    T    136.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.14;MQ0=0;QD=19.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500762    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:169,15,0
5    7301412    rs111795680    C    T    219.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.13;MQ0=0;QD=19.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500762    GT:AD:DP:GQ:PL    1/1:0,10:11:21.06:252,21,0
5    7301424    rs114043041    C    T    122.62    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.98;MQ0=1;MQRankSum=0.244;QD=9.43;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500762    GT:AD:DP:GQ:PL    0/1:7,6:13:99:153,0,161
5    7301429    rs111490839    C    A    130.12    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.18;MQ0=1;MQRankSum=1.027;QD=8.67;ReadPosRankSum=0.663;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500762    GT:AD:DP:GQ:PL    0/1:8,7:15:99:160,0,210
5    7301533    rs78156820    G    C    455.53    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=3.876;DB;DP=72;Dels=0.0;FS=9.592;HRun=1;HaplotypeScore=0.5784;MQ=40.68;MQ0=2;MQRankSum=1.279;QD=6.33;ReadPosRankSum=1.788;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382550    GT:AD:DP:GQ:PL    0/1:49,23:72:99:486,0,1253
5    7301575    rs62341807    T    C    1538.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=35.03;MQ0=4;QD=27.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512854    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1572,132,0
5    7301635    rs113502890    G    A    480.98    MQFilter40    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.448;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.76;MQ0=2;MQRankSum=2.238;QD=14.15;ReadPosRankSum=-1.032;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-404K5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512854    GT:AD:DP:GQ:PL    0/1:12,22:34:99:511,0,159
5    7520781    rs7714705    C    G    99.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.143;QD=9.01;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    0/1:6,5:11:99:129,0,211
5    7690707    rs2973326    C    T    177    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
5    7707145    rs10475386    G    A    33.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.3;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:64,0,34
5    7709181    rs10475389    A    G    297.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:330,27,0
5    7712810    rs6555488    C    T    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
5    7724791    rs147265114    A    G    562.10    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.024;QD=21.62;ReadPosRankSum=-1.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    0/1:9,17:26:99:592,0,290
5    7743787    rs62342477    C    T    3914.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.7;DB;DP=111;Dels=0.0;FS=3.299;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.383;QD=35.27;ReadPosRankSum=0.238;SNPEFF_AMINO_ACID_CHANGE=S446;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_7743781_7743865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537121    GT:AD:DP:GQ:PL    1/1:1,110:111:99:3915,261,0
5    7757647    rs52827085    C    G    1588.47    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.738;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8947;MQ=59.02;MQ0=0;MQRankSum=-0.932;QD=17.65;ReadPosRankSum=0.208;SNPEFF_AMINO_ACID_CHANGE=S501C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_7757562_7757699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537121    GT:AD:DP:GQ:PL    0/1:35,55:90:99:1618,0,1093
5    7757705    rs4072341    T    C    660.98    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=2.563;DB;DP=63;Dels=0.0;FS=4.484;HRun=3;HaplotypeScore=1.4972;MQ=58.74;MQ0=0;MQRankSum=1.067;QD=10.49;ReadPosRankSum=1.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    0/1:34,29:63:99:691,0,1109
5    7757715    rs4479814    C    T    763.40    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.354;DB;DP=54;Dels=0.0;FS=2.815;HRun=0;HaplotypeScore=1.6649;MQ=58.44;MQ0=0;MQRankSum=-1.219;QD=14.14;ReadPosRankSum=1.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    0/1:26,28:54:99:793,0,723
5    7757812    rs3935156    A    G    207.03    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=21;Dels=0.0;FS=2.092;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.181;QD=9.86;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    0/1:13,8:21:99:237,0,441
5    7757867    rs4072340    C    T    71.66    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.96;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,132
5    7782231    rs6555498    C    G    674.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338316    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:708,54,0
5    7859523    rs1046012    A    G    133.31    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.656;QD=10.25;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513577    GT:AD:DP:GQ:PL    0/1:6,7:13:99:163,0,210
5    7861638    rs162027    C    T    260.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513577    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
5    7862926    rs3733784    T    C    6318.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.74;MQ0=0;QD=35.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504695    GT:AD:DP:GQ:PL    1/1:0,176:176:99:6319,467,0
5    7865891    rs16879258    C    A    248.28    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.976;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.661;QD=10.79;ReadPosRankSum=-1.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504695    GT:AD:DP:GQ:PL    0/1:14,9:23:99:278,0,512
5    7866135    rs141939619    TTGAGG    T    1300.29    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=4.902;DB;DP=46;FS=7.02;HRun=0;HaplotypeScore=257.6509;IndelType=D;MQ=57.85;MQ0=0;MQRankSum=-0.354;QD=28.27;ReadPosRankSum=-0.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504695    GT:AD:DP:GQ:PL    0/1:22,24:46:99:1339,0,1592
5    7866967    rs162030    G    C    1523.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=A410;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_7866759_7868309;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264669    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1556,120,0
5    7868030    rs2966952    T    C    2309.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=K39R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_7867603_7868145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTKD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507572    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2342,178,0
5    7870973    rs1801394    A    G    950.58    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.369;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.315;QD=13.02;ReadPosRankSum=-0.383;SNPEFF_AMINO_ACID_CHANGE=I22M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_7870883_7871036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341013    GT:AD:DP:GQ:PL    0/1:37,36:73:99:981,0,1123
5    7878179    rs1532268    C    T    581.65    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=41;Dels=0.0;FS=9.774;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=14.19;ReadPosRankSum=1.219;SNPEFF_AMINO_ACID_CHANGE=S175L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_7878057_7878435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440940    GT:AD:DP:GQ:PL    0/1:22,19:41:99:612,0,672
5    7878620    .    G    T    135.02    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.88;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502509    GT:AD:DP:GQ:PL    0/1:3,5:8:99:165,0,101
5    7885782    rs34487083    A    AT    1595.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.742;DB;DP=82;FS=0.0;HRun=12;HaplotypeScore=280.4286;IndelType=I;MQ=59.19;MQ0=0;MQRankSum=0.137;QD=19.46;ReadPosRankSum=-0.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514369    GT:AD:DP:GQ:PL    1/1:16,63:82:56.46:1638,56,0
5    7886104    rs162037    T    C    317.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=24.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514369    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:351,30,0
5    7886131    rs162038    G    C    388.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=35.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514369    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:422,33,0
5    7893121    rs162049    G    A    170.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341013    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
5    7897319    rs1802059    G    A    810.84    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=74;Dels=0.0;FS=0.907;HRun=1;HaplotypeScore=1.2434;MQ=59.38;MQ0=0;MQRankSum=0.564;QD=10.96;ReadPosRankSum=-0.631;SNPEFF_AMINO_ACID_CHANGE=A637;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_7897178_7897360;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440940    GT:AD:DP:GQ:PL    0/1:42,32:74:99:841,0,1225
5    7899850    rs62342557    T    C    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.34;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508354    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,111
5    9043142    rs67649935    T    TA    450.93    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.99;DB;DP=40;FS=0.0;HRun=9;HaplotypeScore=104.5275;IndelType=I;MQ=58.95;MQ0=0;MQRankSum=-0.617;QD=11.27;ReadPosRankSum=-0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    0/1:21,18:40:99:490,0,342
5    9043288    rs257087    C    T    70.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.03;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,143
5    9066464    rs786847    A    G    1075.80    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=0.855;DB;DP=77;Dels=0.0;FS=7.586;HRun=0;HaplotypeScore=2.6315;MQ=59.7;MQ0=0;MQRankSum=-0.021;QD=13.97;ReadPosRankSum=0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    0/1:41,35:77:99:1106,0,1369
5    9066802    rs786846    G    A    291.05    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.288;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=15.32;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    0/1:8,11:19:99:321,0,283
5    9108135    rs41283163    G    A    131.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
5    9122890    rs17238053    C    A    1294.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=T553;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_9122768_9122949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1327,99,0
5    9136646    rs17238609    C    G    1202.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=36.43;SNPEFF_AMINO_ACID_CHANGE=T523;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_9136616_9136733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1235,93,0
5    9190697    rs1806094    T    C    65.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.21;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    0/1:4,4:8:95.71:96,0,146
5    9190702    rs1806093    G    A    109.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.61;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382496    GT:AD:DP:GQ:PL    0/1:3,4:7:99:139,0,99
5    9197434    rs3216958    A    AGAG    1066.03    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.894;DB;DP=36;FS=9.84;HRun=0;HaplotypeScore=128.3571;IndelType=I;MQ=55.85;MQ0=1;MQRankSum=-0.247;QD=28.81;ReadPosRankSum=0.399;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513968    GT:AD:DP:GQ:PL    0/1:18,18:36:99:1105,0,604
5    9629295    rs2234235    A    G    665.77    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.818;DB;DP=58;Dels=0.0;FS=3.817;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.118;QD=11.48;ReadPosRankSum=-1.887;SNPEFF_AMINO_ACID_CHANGE=L284;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_9629109_9630463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382492    GT:AD:DP:GQ:PL    0/1:34,24:58:99:696,0,1141
5    10227548    rs2136197    C    A    457.79    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.251;DB;DP=46;Dels=0.0;FS=1.407;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.284;QD=9.95;ReadPosRankSum=-1.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM173B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504390    GT:AD:DP:GQ:PL    0/1:26,20:46:99:488,0,865
5    10249790    rs2548551    G    T    109.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=27.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM173B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280330    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
5    10250430    rs2548546    G    A    824.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503026    GT:AD:DP:GQ:PL    1/1:0,31:31:72.19:858,72,0
5    10250443    rs2578618    T    C    1059.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_10250033_10250557;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280326    GT:AD:DP:GQ:PL    1/1:0,31:31:81.25:1093,81,0
5    10250728    rs2607300    C    G    37.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280326    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:69,6,0
5    10254117    rs2259642    C    T    212.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280326    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
5    10254817    rs2578617    A    G    1955    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=33.14;SNPEFF_AMINO_ACID_CHANGE=G28;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_10254786_10254950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515676    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1988,153,0
5    10255021    rs2607294    T    C    416    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510326    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:449,36,0
5    10255083    rs2578616    A    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510326    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    10256161    rs1042392    T    C    1230.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=R104;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_10256067_10256265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515676    GT:AD:DP:GQ:PL    1/1:0,40:41:99:1263,99,0
5    10256365    rs2578614    C    T    86.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508451    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
5    10258125    rs2457156    G    A    210.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508451    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
5    10260656    rs11453082    A    AT    293.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=16.9882;IndelType=I;MQ=60.0;MQ0=0;QD=41.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511700    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:336,21,0
5    10261250    rs2607314    C    G    248.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=24.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511700    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:281,21,0
5    10261408    rs2607316    T    G    75.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509846    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
5    10261542    rs2607327    C    T    2812.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.1;MQ0=0;QD=36.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509846    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2845,223,0
5    10261966    rs2244717    G    A    308    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509846    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:341,27,0
5    10262405    rs2244733    G    A    152.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423695    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:185,15,0
5    10262740    rs2578642    C    A    1401.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423695    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1434,108,0
5    10263041    rs6893533    A    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423695    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    10263453    rs56108751    GA    G    866.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=1;HaplotypeScore=305.6195;IndelType=D;MQ=39.88;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423695    GT:AD:DP:GQ:PL    1/1:0,28:28:84.04:908,84,0
5    10263461    .    GGGA    G    947.73    PASS    AC=2;AF=1.00;AN=2;DP=26;FS=0.0;HRun=0;HaplotypeScore=313.506;IndelType=D;MQ=32.45;MQ0=0;QD=36.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423695    GT:AD:DP:GQ:PL    1/1:4,22:26:75.17:990,75,0
5    10264962    rs544    A    G    1284.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.36;MQ0=0;QD=35.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423695    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1317,96,0
5    10265076    rs699113    C    T    153.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423695    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:187,15,0
5    10280912    rs6895670    G    T    117.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=19.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CMBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296658    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:150,12,0
5    10282396    rs10067744    A    G    863.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.23;MQ0=0;QD=28.77;SNPEFF_AMINO_ACID_CHANGE=I157;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_10282309_10282400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CMBL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296658    GT:AD:DP:GQ:PL    1/1:0,30:30:66.22:896,66,0
5    10282479    rs10052785    C    T    377.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CMBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506821    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:411,33,0
5    10286742    rs13180748    C    T    71.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CMBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514202    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:103,9,0
5    10290457    rs10043622    A    G    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CMBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514202    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    10290460    rs13173113    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CMBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514202    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
5    10390340    rs11449510    G    GT    52.48    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=112.0939;IndelType=I;MQ=56.45;MQ0=0;MQRankSum=-1.423;QD=2.62;ReadPosRankSum=-2.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274140    GT:AD:DP:GQ:PL    0/1:14,5:20:91.51:92,0,197
5    10397621    rs3852167    G    C    80.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274140    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
5    10417589    rs2967956    G    T    1205.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514312    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1238,93,0
5    10442068    rs1047426    C    T    163.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.3;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_10441988_10442410;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROPN1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274134    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
5    10442496    rs2567577    T    C    375.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROPN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274134    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:409,33,0
5    10448247    rs1976360    G    A    400.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROPN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274134    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:434,33,0
5    10564846    rs814576    C    T    120.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.19;SNPEFF_AMINO_ACID_CHANGE=L89;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_10564495_10564945;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKRD33B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296657    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
5    10565027    rs1103749    C    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKRD33B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296657    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
5    10638180    rs11745612    T    C    314.11    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.758;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=8.97;ReadPosRankSum=0.666;SNPEFF_AMINO_ACID_CHANGE=P179;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_10638140_10638280;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKRD33B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296657    GT:AD:DP:GQ:PL    0/1:22,13:35:99:344,0,726
5    10638364    rs6889196    A    G    46.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=9.4;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKRD33B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296657    GT:AD:DP:GQ:PL    0/1:2,3:5:35.74:77,0,36
5    10649784    rs113222960    G    A    73.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.52;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=A348;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_10649378_10650308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKRD33B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296657    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,108
5    10664427    rs12523289    A    C    179.64    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-0.573;QD=17.96;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-215G15.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504159    GT:AD:DP:GQ:PL    0/1:3,7:10:95.95:210,0,96
5    10664578    rs12523335    A    G    807.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=60;Dels=0.0;FS=19.947;HRun=5;HaplotypeScore=0.0;MQ=58.51;MQ0=0;MQRankSum=0.19;QD=13.46;ReadPosRankSum=0.114;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-215G15.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504159    GT:AD:DP:GQ:PL    0/1:30,30:60:99:838,0,970
5    10664632    rs12523340    A    G    1013.51    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.013;DB;DP=67;Dels=0.0;FS=3.312;HRun=0;HaplotypeScore=0.6651;MQ=57.84;MQ0=0;MQRankSum=-0.508;QD=15.13;ReadPosRankSum=1.298;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-215G15.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504159    GT:AD:DP:GQ:PL    0/1:34,33:67:99:1043,0,962
5    10748231    rs267944    C    T    243.20    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=58.9;MQ0=0;MQRankSum=-0.354;QD=14.31;ReadPosRankSum=-0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230895    GT:AD:DP:GQ:PL    0/1:5,11:17:99:273,0,129
5    10748462    rs267943    C    T    298.55    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.474;QD=27.14;ReadPosRankSum=-0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230895    GT:AD:DP:GQ:PL    0/1:1,10:11:6.03:328,0,6
5    10761182    rs267927    A    G    81.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=27.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508253    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
5    10973927    rs1566624    T    C    206.78    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.101;QD=15.91;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    0/1:6,7:13:99:237,0,203
5    10981784    .    GTTCT    G    835.82    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.898;DP=36;FS=0.0;HRun=0;HaplotypeScore=189.7096;IndelType=D;MQ=53.57;MQ0=0;MQRankSum=-1.616;QD=23.22;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    0/1:19,17:36:99:875,0,1452
5    10988172    rs879353    T    C    141.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-1.093;QD=10.11;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    0/1:8,6:14:99:171,0,209
5    10992983    rs4701903    G    C    109.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.63;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,138
5    11082762    rs2277053    T    C    1512.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1545,114,0
5    11365166    rs2074260    C    T    42.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:72,0,29
5    11412302    rs31750    C    T    455.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.736;QD=30.38;ReadPosRankSum=0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    1/1:1,14:15:39.09:489,39,0
5    11564995    rs7719578    A    G    449.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:483,42,0
5    11732144    rs4348210    G    A    460.55    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=26;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.231;QD=17.71;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    0/1:12,14:26:99:491,0,401
5    11732468    rs4466167    C    A    239.72    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.529;QD=14.1;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    0/1:9,8:17:99:270,0,315
5    11732535    rs6864269    C    G    35.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304623    GT:AD:DP:GQ:PL    0/1:4,2:6:65.90:66,0,137
5    13692279    rs2166337    A    T    612.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,21:22:54.16:646,54,0
5    13701327    rs3734112    A    G    1446.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.33;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.485;QD=34.43;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:1,41:42:79.04:1479,79,0
5    13701525    rs3734111    T    C    3910.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7834;MQ=59.82;MQ0=0;QD=30.55;SNPEFF_AMINO_ACID_CHANGE=T4453;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13701393_13701545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,128:128:99:3910,313,0
5    13701536    rs3734110    T    C    3951.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.8;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=I4450V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13701393_13701545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,115:116:99:3951,295,0
5    13701617    rs34378480    GA    G    560.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DB;DP=41;FS=0.0;HRun=12;HaplotypeScore=288.265;IndelType=D;MQ=58.87;MQ0=0;MQRankSum=-0.777;QD=13.66;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:13,27:41:55.21:602,55,0
5    13701654    rs13162313    T    C    728.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:761,57,0
5    13701699    rs13180448    G    A    212.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
5    13714740    rs30175    G    A    380.15    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=21;Dels=0.0;FS=2.75;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.05;QD=18.1;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:8,13:21:99:410,0,238
5    13719022    rs30169    T    G    675.43    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.921;DB;DP=48;Dels=0.0;FS=1.169;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.919;QD=14.07;ReadPosRankSum=0.743;SNPEFF_AMINO_ACID_CHANGE=G4156;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13718991_13719210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:25,23:48:99:705,0,747
5    13719089    rs30168    G    A    765.42    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=67;Dels=0.0;FS=0.977;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.171;QD=11.42;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=A4134V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13718991_13719210;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:38,29:67:99:795,0,1148
5    13720970    rs112114995    T    TA    92.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=20.654;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=-0.361;QD=9.24;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:5,5:10:71.52:131,0,72
5    13721378    rs17203442    A    G    471.67    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.536;DB;DP=34;Dels=0.0;FS=3.401;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.397;QD=13.87;ReadPosRankSum=-0.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:18,16:34:99:502,0,545
5    13729714    rs3777093    A    G    324.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.692;QD=14.76;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:12,10:22:99:355,0,401
5    13735147    rs6554808    C    A    30.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.4;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:5,2:7:60.81:61,0,186
5    13735892    rs3734109    T    C    2541.95    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=2.433;DB;DP=140;Dels=0.0;FS=2.606;HRun=0;HaplotypeScore=0.8667;MQ=59.51;MQ0=0;MQRankSum=-0.299;QD=18.16;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:54,86:140:99:2572,0,1641
5    13737444    rs17263496    G    A    1003.31    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.657;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=1.067;QD=13.03;ReadPosRankSum=-1.492;SNPEFF_AMINO_ACID_CHANGE=T3791I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13737361_13737604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:42,35:77:99:1033,0,1300
5    13737700    rs2401811    A    G    166.41    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.13;ReadPosRankSum=-1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:4,7:11:99:196,0,136
5    13754394    rs2401809    C    T    1048.98    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.914;DB;DP=93;Dels=0.0;FS=0.793;HRun=0;HaplotypeScore=1.7885;MQ=56.48;MQ0=0;MQRankSum=0.117;QD=11.28;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=T3491;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13754312_13754447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:45,48:93:99:1079,0,1272
5    13759172    rs143022346    TA    T    594.62    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=4.855;DB;DP=42;FS=0.0;HRun=2;HaplotypeScore=103.9193;IndelType=D;MQ=60.33;MQ0=0;MQRankSum=-1.312;QD=14.16;ReadPosRankSum=0.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504001    GT:AD:DP:GQ:PL    0/1:22,20:42:99:634,0,780
5    13762972    rs6554812    T    C    400.74    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.034;DB;DP=36;Dels=0.0;FS=4.046;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.665;QD=11.13;ReadPosRankSum=-0.243;SNPEFF_AMINO_ACID_CHANGE=E3380;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13762831_13763010;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:22,14:36:99:431,0,787
5    13763039    rs6554813    G    A    113.49    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.405;QD=7.57;ReadPosRankSum=-1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:8,7:15:99:143,0,246
5    13823262    rs10035657    T    C    525.23    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.281;QD=15.01;ReadPosRankSum=2.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:17,18:35:99:555,0,587
5    13823588    rs6864007    T    A    143.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=14.36;ReadPosRankSum=1.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,167
5    13829608    rs1348691    G    A    780.07    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.353;DB;DP=64;Dels=0.0;FS=1.301;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.395;QD=12.19;ReadPosRankSum=0.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:34,30:64:99:810,0,1125
5    13829799    rs1348689    G    A    727.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.61;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-2.07;QD=14.56;ReadPosRankSum=0.15;SNPEFF_AMINO_ACID_CHANGE=A2088;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13829619_13829813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:25,25:50:99:758,0,840
5    13829933    rs16902790    G    A    37.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=6.32;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:3,3:6:67.94:68,0,111
5    13830048    rs10474996    G    A    31.20    QDFilter2    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.781;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.98;MQ0=0;MQRankSum=-2.976;QD=1.84;ReadPosRankSum=-1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:10,7:17:61.19:61,0,340
5    13839695    rs9312849    C    T    178.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=18;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.423;QD=9.89;ReadPosRankSum=-1.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:9,9:18:99:208,0,271
5    13840972    .    ATTTG    A    488.48    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=3.685;DP=27;FS=0.0;HRun=0;HaplotypeScore=123.3529;IndelType=D;MQ=59.09;MQ0=0;MQRankSum=-1.038;QD=18.09;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:16,11:27:99:528,0,1125
5    13842052    rs1910089    A    T    206.02    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.98;MQ0=0;MQRankSum=0.246;QD=9.81;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:10,11:21:99:236,0,199
5    13844714    rs13358551    C    A    128.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
5    13844734    rs112098687    AT    A    139.92    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;FS=0.0;HRun=8;HaplotypeScore=34.8974;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=17.49;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:1,7:8:12.21:179,0,12
5    13845045    rs10041113    G    A    1310    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=0.094;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-1.847;QD=16.58;ReadPosRankSum=-0.332;SNPEFF_AMINO_ACID_CHANGE=A1724;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13844946_13845102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:34,45:79:99:1340,0,990
5    13845107    rs4429853    A    G    600.08    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.563;DB;DP=43;Dels=0.0;FS=3.27;HRun=0;HaplotypeScore=0.9665;MQ=59.03;MQ0=0;MQRankSum=0.775;QD=13.96;ReadPosRankSum=-1.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:19,24:43:99:630,0,557
5    13845151    rs10041099    C    G    430.07    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.37;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=1.165;QD=17.92;ReadPosRankSum=0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    0/1:10,14:24:99:460,0,251
5    13850739    rs4701988    T    A    739.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:772,57,0
5    13859807    rs1867677    G    T    1049.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4875;MQ=59.2;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,29:29:84.21:1082,84,0
5    13876605    rs1445805    T    C    112.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
5    13876664    rs1445804    T    C    157.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:190,15,0
5    13882958    rs13170062    C    T    2002.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2036,159,0
5    13883262    rs10462710    C    G    330.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:364,27,0
5    13884960    rs10866504    A    T    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=61.34;MQ0=0;QD=16.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:166,15,0
5    13885023    rs147685082    GCA    G    1155.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=203.2841;IndelType=D;MQ=59.15;MQ0=0;MQRankSum=1.55;QD=26.88;ReadPosRankSum=-1.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:4,36:43:65.46:1198,65,0
5    13900345    rs1445823    A    G    1075.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=D743;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13900315_13900521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1108,81,0
5    13902220    rs1530498    T    C    972.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=29.46;SNPEFF_AMINO_ACID_CHANGE=T558A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13902162_13902247;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,33:33:72.24:1005,72,0
5    13911700    rs35167844    GAA    G    141.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=8;HaplotypeScore=22.0195;IndelType=D;MQ=60.0;MQ0=0;QD=20.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:2,5:7:15.05:183,15,0
5    13913885    rs3213936    A    G    1930.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=32.18;SNPEFF_AMINO_ACID_CHANGE=I501;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13913852_13914067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1964,156,0
5    13914120    rs10513162    T    C    800.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:833,63,0
5    13914193    rs12652241    T    A    254.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:287,21,0
5    13914556    rs13179761    A    G    796.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:830,63,0
5    13914775    rs13180591    G    T    2188.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2222,169,0
5    13914796    rs13162553    T    C    1801.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,55:56:99:1834,144,0
5    13914819    rs13180613    G    A    1561.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=37.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1594,117,0
5    13916302    rs11750882    C    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    13919083    rs6893848    C    T    93.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
5    13919578    rs12655818    G    A    505.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:538,39,0
5    13920362    rs11745217    G    A    129.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
5    13920898    rs6885732    T    C    62.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,6:6:9.01:94,9,0
5    13923121    rs1900163    A    T    88.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
5    13928085    rs12659700    T    C    217.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
5    13931205    rs1530497    G    C    1288.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1321,99,0
5    13931340    rs1530496    C    T    1576.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_AMINO_ACID_CHANGE=G24E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13931219_13931353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1610,123,0
5    13944512    rs339445    A    C    2015.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6927;MQ=59.11;MQ0=0;QD=35.37;SNPEFF_AMINO_ACID_CHANGE=H12Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_13944491_13944652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265104    GT:AD:DP:GQ:PL    1/1:1,56:57:99:2049,153,0
5    14290805    rs30629    G    A    387.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.103;DB;DP=26;Dels=0.0;FS=4.925;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.564;QD=14.91;ReadPosRankSum=-0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505971    GT:AD:DP:GQ:PL    0/1:13,13:26:99:418,0,375
5    14330755    rs71599618    AT    A    53.19    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=16;FS=0.0;HRun=9;HaplotypeScore=38.1195;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=1.041;QD=3.32;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:11,5:16:92.22:92,0,301
5    14366840    rs30784    T    C    621.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:655,48,0
5    14368975    rs13189406    C    T    926.20    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=5.615;DB;DP=71;Dels=0.0;FS=11.01;HRun=0;HaplotypeScore=3.4661;MQ=59.74;MQ0=0;MQRankSum=-1.398;QD=13.05;ReadPosRankSum=-1.081;SNPEFF_AMINO_ACID_CHANGE=N1011;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_14368817_14369008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:36,35:71:99:956,0,871
5    14369425    rs116225615    G    T    801.12    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.51;DB;DP=56;Dels=0.0;FS=4.562;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=14.31;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:24,32:56:99:831,0,691
5    14369690    rs35860741    G    A    356.44    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.013;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=16.2;ReadPosRankSum=-0.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:8,14:22:99:386,0,275
5    14377962    rs30769    A    C    488.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:522,39,0
5    14378068    rs30770    T    G    2297.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2330,184,0
5    14381033    rs6877000    T    A    143.95    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.56;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:2,5:7:57.51:174,0,58
5    14381174    rs247137    C    T    580.49    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.391;DB;DP=39;Dels=0.0;FS=1.795;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.436;QD=14.88;ReadPosRankSum=1.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:20,19:39:99:610,0,647
5    14387489    rs30794    G    C    228.57    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.418;DB;DP=25;Dels=0.0;FS=2.623;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.437;QD=9.14;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:17,8:25:99:259,0,521
5    14388112    rs30795    C    G    296.11    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=2.034;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.294;QD=22.78;ReadPosRankSum=-1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510757    GT:AD:DP:GQ:PL    0/1:3,10:13:78.05:326,0,78
5    14388181    rs30796    T    A    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510757    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:69,0,72
5    14388797    rs57751910    GT    G    30.23    QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=0.066;DB;DP=57;FS=11.542;HRun=18;HaplotypeScore=328.4277;IndelType=D;MQ=54.42;MQ0=0;MQRankSum=2.141;QD=0.53;ReadPosRankSum=1.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510757    GT:AD:DP:GQ:PL    0/1:42,9:57:69.26:69,0,360
5    14394283    rs256412    G    A    249.72    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=15.61;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:7,9:16:99:280,0,243
5    14397238    rs30774    T    C    106.57    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.271;QD=6.66;ReadPosRankSum=0.38;SNPEFF_AMINO_ACID_CHANGE=D1153;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_14397152_14397263;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513206    GT:AD:DP:GQ:PL    0/1:10,6:16:99:137,0,361
5    14398902    rs34806703    AT    A    339.47    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=27;FS=0.0;HRun=2;HaplotypeScore=72.8516;IndelType=D;MQ=62.75;MQ0=0;MQRankSum=2.464;QD=12.57;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502490    GT:AD:DP:GQ:PL    0/1:15,12:27:99:379,0,566
5    14405895    rs389729    G    A    252.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=53.23;MQ0=0;MQRankSum=-0.4;QD=14.05;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:8,10:18:99:283,0,216
5    14420027    rs30612    A    C    724.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=T1387;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_14419887_14420130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513206    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:757,60,0
5    14462617    rs26105    C    G    69.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.85;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:2,3:5:65.76:99,0,66
5    14462816    rs27100    C    T    993.61    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DB;DP=74;Dels=0.0;FS=3.36;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.819;QD=13.43;ReadPosRankSum=1.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:40,34:74:99:1024,0,1205
5    14471666    rs27091    T    A    123.33    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=11.21;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:6,5:11:99:153,0,217
5    14472626    rs26186    T    C    648.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:682,54,0
5    14474283    rs11749307    G    A    168.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=18.74;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:3,6:9:99:199,0,100
5    14476968    rs40490    G    T    322.21    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=57.05;MQ0=0;MQRankSum=-0.695;QD=13.43;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344204    GT:AD:DP:GQ:PL    0/1:13,11:24:99:352,0,422
5    14479938    rs26173    G    A    336.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506611    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:370,27,0
5    14506939    .    C    T    45.91    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508283    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    14507518    rs111969821    A    ATC    209.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=10.5967;IndelType=I;MQ=60.0;MQ0=0;QD=41.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508283    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:251,15,0
5    14601059    .    TTG    T    123.83    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=2.556;DP=23;FS=15.911;HRun=0;HaplotypeScore=246.6799;IndelType=D;MQ=49.87;MQ0=0;MQRankSum=-0.772;QD=5.38;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM105A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274217    GT:AD:DP:GQ:PL    0/1:15,8:23:99:163,0,158
5    14607189    rs31972    A    T    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM105A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
5    14607280    rs31971    A    G    62.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM105A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274217    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:95,9,0
5    14609352    rs25961    C    G    160.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM105A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513825    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:193,15,0
5    14610184    rs25960    C    G    893.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM105A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513825    GT:AD:DP:GQ:PL    1/1:0,28:28:78.20:927,78,0
5    14651991    rs6554855    G    A    706    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.63;MQ0=5;QD=23.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2165H16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503537    GT:AD:DP:GQ:PL    1/1:2,28:30:60.14:739,60,0
5    14678996    rs31930    G    A    376.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM105B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507335    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:409,30,0
5    14746184    rs2004699    G    A    37.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284268    GT:AD:DP:GQ:PL    0/1:2,2:4:67.77:68,0,71
5    14751399    rs697570    C    T    280.23    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.759;DB;DP=17;Dels=0.0;FS=1.913;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.955;QD=16.48;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284268    GT:AD:DP:GQ:PL    0/1:6,11:17:99:310,0,176
5    15927873    rs72327518    TAAAAAAA    T    334.35    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=32;FS=0.0;HRun=23;HaplotypeScore=421.5171;IndelType=D;MQ=35.01;MQ0=0;MQRankSum=-0.322;QD=10.45;ReadPosRankSum=0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329673    GT:AD:DP:GQ:PL    0/1:18,5:32:99:373,0,849
5    15927896    rs70938036    AGAAGAAG    A    280.09    PASS    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=3.012;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=588.4292;IndelType=D;MQ=41.37;MQ0=0;MQRankSum=-3.412;QD=5.72;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329673    GT:AD:DP:GQ:PL    0/1:41,5:49:99:319,0,1204
5    16091242    rs11450250    G    GA    356.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=35.016;IndelType=I;MQ=62.13;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332432    GT:AD:DP:GQ:PL    1/1:3,12:15:36.10:398,36,0
5    16177716    rs342548    T    C    547.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332432    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:580,42,0
5    16177807    rs2582666    A    G    2226.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332432    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2260,187,0
5    16474778    rs11428210    CT    C    116.04    PASS    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=48;FS=0.0;HRun=16;HaplotypeScore=316.0431;IndelType=D;MQ=53.77;MQ0=0;MQRankSum=0.179;QD=2.42;ReadPosRankSum=-1.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM134B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509977    GT:AD:DP:GQ:PL    0/1:37,7:48:99:155,0,440
5    16474794    .    TC    T    185.83    PASS    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=2.413;DP=60;FS=19.932;HRun=1;HaplotypeScore=333.3627;IndelType=D;MQ=54.39;MQ0=0;MQRankSum=-0.81;QD=3.1;ReadPosRankSum=0.826;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM134B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509977    GT:AD:DP:GQ:PL    0/1:51,9:60:99:225,0,834
5    16477751    rs162850    C    A    1928.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM134B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306320    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1962,144,0
5    16478200    rs162848    G    A    707.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=D131;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_16478143_16478207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM134B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399793    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:741,54,0
5    16479220    rs33692    A    G    214.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM134B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506441    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
5    16481062    rs2305279    C    T    784.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.3;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=31.36;ReadPosRankSum=-1.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM134B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506441    GT:AD:DP:GQ:PL    1/1:1,24:25:27.64:817,28,0
5    16508674    rs332811    A    G    728.24    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.9;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.864;QD=19.16;ReadPosRankSum=1.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM134B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306320    GT:AD:DP:GQ:PL    0/1:12,26:38:99:758,0,330
5    16617099    rs35003    A    G    38.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM134B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509048    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
5    16667003    rs26743    C    T    262.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:296,24,0
5    16668167    rs26744    G    A    165.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
5    16668256    rs35579    A    G    721.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,25:25:69.16:755,69,0
5    16668531    .    G    A    742.75    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.503;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.041;QD=13.03;ReadPosRankSum=-0.616;SNPEFF_AMINO_ACID_CHANGE=A1316V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_16668386_16668577;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505695    GT:AD:DP:GQ:PL    0/1:30,26:57:99:773,0,970
5    16670442    rs367165    T    C    139.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,7:7:20.96:173,21,0
5    16670443    rs367967    G    A    139.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,7:7:20.96:173,21,0
5    16670501    rs27430    C    T    672.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:706,54,0
5    16670514    rs25864    T    A    1032.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,31:31:90.26:1066,90,0
5    16670618    rs27431    C    T    3012.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6159;MQ=59.01;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,101:104:99:3046,238,0
5    16673664    rs27880    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
5    16673685    rs26745    C    T    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
5    16673975    rs25901    C    G    3544.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=33.13;SNPEFF_AMINO_ACID_CHANGE=S1002T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_16673791_16673998;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505695    GT:AD:DP:GQ:PL    1/1:0,106:107:99:3544,262,0
5    16676103    rs28057    T    C    1359.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1393,102,0
5    16676549    rs26748    A    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    16679914    rs10060411    G    A    422.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:456,33,0
5    16679926    rs3217321    G    GC    476.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=98.7558;IndelType=I;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:518,36,0
5    16679966    rs35580    C    T    756.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:790,63,0
5    16681288    rs56212177    G    GAT    342.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=50.5814;IndelType=I;MQ=57.05;MQ0=0;QD=42.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:2,6:8:21.07:385,21,0
5    16681305    rs26758    A    G    246.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
5    16681966    rs399833    G    A    887.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.56;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:921,75,0
5    16684109    rs2303703    T    C    405.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:439,36,0
5    16689794    rs1863996    C    T    332.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
5    16694224    rs257047    C    T    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
5    16694309    rs25910    T    C    1108.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1141,84,0
5    16694349    rs25911    T    C    2196.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=59.24;MQ0=0;MQRankSum=0.256;QD=36.02;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:1,60:61:99:2230,133,0
5    16699512    rs256930    G    A    2329.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506343    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2363,181,0
5    16711365    rs78384196    CA    C    1284.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DB;DP=62;FS=0.0;HRun=10;HaplotypeScore=181.8055;IndelType=D;MQ=60.17;MQ0=0;MQRankSum=0.128;QD=20.72;ReadPosRankSum=-0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:8,53:62:99:1327,128,0
5    16711451    rs27552    G    T    785.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274203    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:819,60,0
5    16762646    rs31511    T    C    1308.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.44;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1341,105,0
5    16763908    rs39900    G    A    602.57    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.458;DB;DP=36;Dels=0.0;FS=3.627;HRun=1;HaplotypeScore=0.9578;MQ=59.36;MQ0=0;MQRankSum=-0.063;QD=16.74;ReadPosRankSum=0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    0/1:17,19:36:99:633,0,548
5    16764255    rs67792126    CA    C    1522.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.026;DB;DP=70;FS=0.0;HRun=11;HaplotypeScore=323.1519;IndelType=D;MQ=60.58;MQ0=0;MQRankSum=0.698;QD=21.75;ReadPosRankSum=-0.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    1/1:4,65:70:99:1564,168,0
5    16764334    rs250341    C    T    3356.89    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=3.199;DB;DP=206;Dels=0.0;FS=0.57;HRun=0;HaplotypeScore=3.4314;MQ=59.82;MQ0=0;MQRankSum=-1.836;QD=16.3;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    0/1:89,117:206:99:3357,0,2447
5    16764644    rs2561231    T    C    110.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.32;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    0/1:5,4:9:99:141,0,175
5    16766093    rs2561232    C    T    2067.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2100,156,0
5    16769008    rs171627    C    A    79.85    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.97;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:110,0,30
5    16769273    rs11750538    G    A    490.60    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=42;Dels=0.0;FS=9.664;HRun=2;HaplotypeScore=0.9332;MQ=59.45;MQ0=0;MQRankSum=-1.524;QD=11.68;ReadPosRankSum=-0.818;SNPEFF_AMINO_ACID_CHANGE=R324W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_16769183_16769312;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    0/1:20,22:42:99:521,0,691
5    16783204    rs25905    C    G    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502436    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
5    16783327    rs1560089    A    G    348.98    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.346;QD=15.17;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502436    GT:AD:DP:GQ:PL    0/1:9,14:23:99:379,0,303
5    16783593    rs72732235    G    A    1007.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=60;Dels=0.0;FS=4.144;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.083;QD=16.79;ReadPosRankSum=-0.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502436    GT:AD:DP:GQ:PL    0/1:24,36:60:99:1037,0,647
5    16794916    rs396514    G    A    314.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.19;MQ0=0;QD=34.91;SNPEFF_AMINO_ACID_CHANGE=S102;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_16794755_16794942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513610    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:347,27,0
5    16818363    rs12188582    A    G    448.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502436    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:481,36,0
5    16877701    rs7710976    C    G    703.10    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=58;Dels=0.0;FS=1.217;HRun=1;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;MQRankSum=-1.285;QD=12.12;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502436    GT:AD:DP:GQ:PL    0/1:30,28:58:99:733,0,908
5    16902512    rs2560842    A    T    2711.63    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.122;DB;DP=189;Dels=0.0;FS=9.735;HRun=0;HaplotypeScore=1.7882;MQ=58.8;MQ0=0;MQRankSum=2.198;QD=14.27;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502436    GT:AD:DP:GQ:PL    0/1:96,92:189:99:2742,0,2881
5    16902701    rs75635412    T    A    1234.71    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.667;DB;DP=109;Dels=0.0;FS=0.77;HRun=0;HaplotypeScore=1.5362;MQ=51.82;MQ0=0;MQRankSum=-0.16;QD=11.33;ReadPosRankSum=-1.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502436    GT:AD:DP:GQ:PL    0/1:59,50:109:99:1265,0,1810
5    17354037    rs7733712    A    G    1282.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.75;MQ0=0;QD=31.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2139B15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511821    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1316,105,0
5    17354041    rs7715898    T    C    1332.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.75;MQ0=0;QD=32.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2139B15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511821    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1366,102,0
5    17498846    rs2457752    A    G    363.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.54;MQ0=0;QD=25.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-321E2.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515105    GT:AD:DP:GQ:PL    1/1:0,14:14:36.08:396,36,0
5    17632127    rs4080903    T    C    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.22;MQ0=0;QD=20.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-432M8.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515381    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
5    17632442    rs34106316    G    C    86.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.27;MQ0=1;QD=10.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-432M8.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515381    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:118,9,0
5    17632536    rs35053229    C    T    177.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.45;MQ0=1;QD=22.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-432M8.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515381    GT:AD:DP:GQ:PL    1/1:1,7:8:15.05:211,15,0
5    19520932    rs441865    T    C    761.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.22;MQ0=0;MQRankSum=-1.148;QD=14.1;ReadPosRankSum=0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274170    GT:AD:DP:GQ:PL    0/1:27,27:54:99:791,0,832
5    19721261    rs10941430    T    C    295.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508350    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
5    19721490    rs12187552    T    C    2249.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7552;MQ=59.3;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=Q149;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_19721456_19721575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515257    GT:AD:DP:GQ:PL    1/1:1,64:66:99:2283,181,0
5    20304486    rs11747601    A    T    645.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.87;MQ0=0;QD=28.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507958    GT:AD:DP:GQ:PL    1/1:0,23:23:54.17:679,54,0
5    21121448    rs6414912    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    21461786    rs4701564    T    A    740.84    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=2.059;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.96;MQ0=0;MQRankSum=1.126;QD=15.76;ReadPosRankSum=-0.785;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:21,26:47:99:771,0,686
5    21462082    rs12657455    G    A    448.70    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.116;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.054;QD=13.6;ReadPosRankSum=-1.171;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:17,16:33:99:479,0,584
5    21481774    rs60449939    T    C    251.72    QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=2.592;DB;DP=225;DS;Dels=0.0;FS=5.635;HRun=0;HaplotypeScore=1.9937;MQ=50.35;MQ0=2;MQRankSum=1.056;QD=1.12;ReadPosRankSum=-1.795;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:198,27:225:99:282,0,6108
5    21482188    .    C    G    509.23    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DP=187;Dels=0.0;FS=36.704;HRun=0;HaplotypeScore=2.1434;MQ=44.19;MQ0=2;MQRankSum=-4.075;QD=2.72;ReadPosRankSum=-0.005;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:148,38:187:99:539,0,4585
5    21482512    rs62347255    G    A    1300.41    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.33;DB;DP=249;DS;Dels=0.0;FS=35.172;HRun=0;HaplotypeScore=2.4905;MQ=14.35;MQ0=139;MQRankSum=7.357;QD=5.22;ReadPosRankSum=-0.215;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    1/1:164,85:249:6.65:1332,7,0
5    21482593    .    T    C    128.95    MQFilter40;QDFilter2    AB=0.943;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.063;DP=212;DS;Dels=0.0;FS=15.145;HRun=0;HaplotypeScore=0.0;MQ=16.99;MQ0=74;MQRankSum=3.714;QD=0.61;ReadPosRankSum=-0.821;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:200,12:212:99:159,0,1110
5    21482620    rs62347256    G    C    433.18    MQFilter40    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=2.642;DB;DP=194;DS;Dels=0.0;FS=4.037;HRun=1;HaplotypeScore=0.9469;MQ=20.71;MQ0=36;MQRankSum=4.973;QD=2.22;ReadPosRankSum=-0.581;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:170,24:194:99:463,0,1097
5    21482630    .    T    C    340.51    MQFilter40;QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.713;DP=208;DS;Dels=0.0;FS=1.178;HRun=4;HaplotypeScore=0.0;MQ=20.02;MQ0=51;MQRankSum=4.551;QD=1.64;ReadPosRankSum=-0.782;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:176,32:208:99:371,0,1381
5    21482783    rs62347257    G    A    2706    PASS    AB=0.498;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.732;DB;DP=235;Dels=0.0;FS=7.56;HRun=0;HaplotypeScore=3.5711;MQ=41.78;MQ0=9;MQRankSum=-3.085;QD=11.51;ReadPosRankSum=2.202;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:117,118:235:99:2736,0,3667
5    21482878    rs62347258    C    A    4512.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.3531;MQ=33.1;MQ0=18;QD=19.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    1/1:0,226:226:99:4513,373,0
5    21482958    .    A    G    1438.75    HaplotypeScoreFilter13;MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.158;DP=232;Dels=0.0;FS=17.349;HRun=2;HaplotypeScore=18.3919;MQ=32.09;MQ0=23;MQRankSum=1.205;QD=6.2;ReadPosRankSum=-0.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:138,94:232:99:1469,0,2217
5    21482977    .    T    A    301.68    MQFilter40;QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=4.759;DP=232;Dels=0.0;FS=18.854;HRun=0;HaplotypeScore=3.5452;MQ=32.28;MQ0=20;MQRankSum=-3.456;QD=1.29;ReadPosRankSum=1.821;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:176,54:232:99:332,0,2963
5    21483605    rs10078898    C    G    855.24    PASS    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=123;Dels=0.0;FS=1.622;HRun=0;HaplotypeScore=1.7834;MQ=50.75;MQ0=0;MQRankSum=-2.323;QD=6.95;ReadPosRankSum=0.171;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:88,35:123:99:885,0,2664
5    21483636    rs9764179    G    C    46.24    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.58;DB;DP=121;Dels=0.0;FS=8.54;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=2;MQRankSum=2.117;QD=0.38;ReadPosRankSum=-1.142;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:105,15:121:76.23:76,0,3137
5    21483824    .    T    G    74    FSFilter60;MQFilter40;QDFilter2    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.66;DP=192;Dels=0.0;FS=62.189;HRun=2;HaplotypeScore=10.5391;MQ=29.35;MQ0=49;MQRankSum=-2.356;QD=0.39;ReadPosRankSum=1.678;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-823P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328346    GT:AD:DP:GQ:PL    0/1:132,56:192:99:104,0,1849
5    21495364    rs9292980    G    C    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.26;MQ0=2;QD=11.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC138951.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366374    GT:AD:DP:GQ:PL    1/1:0,12:12:15.04:167,15,0
5    21497271    rs4701278    T    A    2530.47    MQFilter40    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=3.49;DB;DP=249;DS;Dels=0.0;FS=5.251;HRun=0;HaplotypeScore=1.8332;MQ=30.37;MQ0=27;MQRankSum=-10.099;QD=10.12;ReadPosRankSum=1.728;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC138951.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366374    GT:AD:DP:GQ:PL    0/1:59,189:249:99:2560,0,1650
5    21497344    rs4701585    T    G    126.74    MQFilter40;QDFilter2    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=4.657;DB;DP=97;DS;Dels=0.0;FS=18.003;HRun=2;HaplotypeScore=1.7219;MQ=35.81;MQ0=24;MQRankSum=-7.141;QD=1.31;ReadPosRankSum=1.764;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC138951.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366374    GT:AD:DP:GQ:PL    0/1:45,52:97:99:157,0,1649
5    21497356    rs111442560    C    CA    353.30    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=4.22;DB;DP=50;DS;FS=15.485;HRun=1;HaplotypeScore=171.8893;IndelType=I;MQ=37.37;MQ0=12;MQRankSum=-5.173;QD=4.47;ReadPosRankSum=1.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC138951.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366374    GT:AD:DP:GQ:PL    0/1:38,41:50:99:392,0,1276
5    21751715    rs10657805    C    CAGAA    687.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=61.7892;IndelType=I;MQ=46.95;MQ0=0;QD=68.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517378    GT:AD:DP:GQ:PL    1/1:2,8:10:27.09:729,27,0
5    21752050    rs6451992    A    G    1653.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=D687;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_21751606_21752345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522262    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1686,129,0
5    21752056    rs6451993    A    G    1682.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=D685;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_21751606_21752345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522262    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1716,141,0
5    21760602    rs2303748    C    A    2461.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9987;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382254    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2494,187,0
5    21765431    rs10941924    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382254    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
5    21802662    rs6897177    C    T    300.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=51.77;MQ0=0;QD=25.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382254    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:333,24,0
5    21816901    rs6880580    C    T    123.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382254    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
5    21817247    rs114414442    A    G    1012.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382254    GT:AD:DP:GQ:PL    1/1:0,27:27:78.23:1046,78,0
5    21882824    rs112407611    TGTAG    T    1357.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=142.6639;IndelType=D;MQ=27.67;MQ0=0;QD=27.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382254    GT:AD:DP:GQ:PL    1/1:3,47:27:75.26:1399,75,0
5    21884101    rs13165182    A    G    1110.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.73;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382254    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1143,84,0
5    21965726    rs62349066    A    G    176.79    QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.284;DB;DP=132;Dels=0.0;FS=1.214;HRun=1;HaplotypeScore=8.0269;MQ=51.09;MQ0=0;MQRankSum=-5.396;QD=1.34;ReadPosRankSum=2.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382254    GT:AD:DP:GQ:PL    0/1:113,19:132:99:207,0,3092
5    23510203    rs2973615    A    G    378.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502755    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:411,30,0
5    23523348    rs1874165    C    T    777.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253473    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:810,63,0
5    23527239    rs6875787    C    G    600.48    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.451;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2859;MQ=28.07;MQ0=9;MQRankSum=2.525;QD=16.23;ReadPosRankSum=-1.783;SNPEFF_AMINO_ACID_CHANGE=T681S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_23526342_23528706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296682    GT:AD:DP:GQ:PL    1/1:8,29:37:57.07:633,57,0
5    23527304    rs112981617    T    C    81.37    MQFilter40;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.71;MQ0=15;MQRankSum=1.237;QD=1.63;ReadPosRankSum=-2.964;SNPEFF_AMINO_ACID_CHANGE=W703R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_23526342_23528706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296682    GT:AD:DP:GQ:PL    0/1:44,6:50:99:111,0,721
5    23527335    .    C    G    258.30    MQFilter40    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=37.78;MQ0=15;MQRankSum=1.466;QD=3.74;ReadPosRankSum=1.748;SNPEFF_AMINO_ACID_CHANGE=T713R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_23526342_23528706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296682    GT:AD:DP:GQ:PL    0/1:56,12:69:99:288,0,1016
5    23527385    .    A    C    171.14    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.516;DP=68;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=1.9623;MQ=40.19;MQ0=10;MQRankSum=1.196;QD=2.48;ReadPosRankSum=-0.825;SNPEFF_AMINO_ACID_CHANGE=S730R;SNPEFF_CODON_CHANGE=Agc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_23526342_23528706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296682    GT:AD:DP:GQ:PL    0/1:56,12:68:99:201,0,1126
5    23527388    rs58979818    A    G    166.36    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.263;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7443;MQ=40.19;MQ0=10;MQRankSum=1.184;QD=2.41;ReadPosRankSum=-1.771;SNPEFF_AMINO_ACID_CHANGE=N731D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_23526342_23528706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296682    GT:AD:DP:GQ:PL    0/1:55,14:69:99:196,0,1108
5    23527419    .    C    G    135.73    MQFilter40    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=0.946;DP=66;Dels=0.0;FS=5.472;HRun=0;HaplotypeScore=1.9638;MQ=38.22;MQ0=11;MQRankSum=-0.501;QD=2.06;ReadPosRankSum=-3.218;SNPEFF_AMINO_ACID_CHANGE=T741R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_23526342_23528706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296682    GT:AD:DP:GQ:PL    0/1:56,10:66:99:166,0,1178
5    23527919    rs2099081    A    G    610.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=32.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253473    GT:AD:DP:GQ:PL    1/1:0,18:19:51.16:644,51,0
5    24492104    rs17312702    T    C    85.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264463    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
5    24509947    rs3797171    C    A    382.86    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.651;DB;DP=24;Dels=0.0;FS=2.75;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.457;QD=15.95;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264463    GT:AD:DP:GQ:PL    0/1:10,14:24:99:413,0,203
5    24511368    rs3797168    C    T    542.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.009;DB;DP=36;Dels=0.0;FS=2.116;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.87;QD=15.06;ReadPosRankSum=-1.756;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264463    GT:AD:DP:GQ:PL    0/1:18,18:36:99:572,0,631
5    26886200    rs41271091    C    A    636.29    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.493;DB;DP=78;Dels=0.0;FS=4.171;HRun=4;HaplotypeScore=2.4447;MQ=59.7;MQ0=0;MQRankSum=0.662;QD=8.16;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231021    GT:AD:DP:GQ:PL    0/1:48,30:78:99:666,0,1597
5    26889902    rs13190383    A    C    304.85    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.271;DB;DP=19;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.032;QD=16.04;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231021    GT:AD:DP:GQ:PL    0/1:8,11:19:99:335,0,284
5    26988328    rs2288466    G    A    1113.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.13;SNPEFF_AMINO_ACID_CHANGE=A38V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_26988213_26988489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231021    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1147,84,0
5    26988424    rs2288467    T    C    1003.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_AMINO_ACID_CHANGE=Y6C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_26988213_26988489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231021    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1036,75,0
5    27986026    rs10036143    A    G    288.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC010455.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408794    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:322,24,0
5    30487979    rs62357337    C    T    221.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.08;MQ0=4;QD=20.16;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:21.05:255,21,0
5    31297651    rs2330700    T    G    114.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.09;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265071    GT:AD:DP:GQ:PL    0/1:2,4:6:67.23:145,0,67
5    31297672    rs2909573    A    C    134.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265071    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
5    31299445    rs2962800    G    A    288.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265071    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
5    31317494    rs2302904    C    T    696.18    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8995;MQ=59.44;MQ0=0;MQRankSum=-0.98;QD=8.39;ReadPosRankSum=-1.215;SNPEFF_AMINO_ACID_CHANGE=L454;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_31317482_31317599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514738    GT:AD:DP:GQ:PL    0/1:48,34:82:99:726,0,1474
5    31322851    rs2962790    A    G    1163.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=29.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504835    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1196,102,0
5    31401447    rs10719    A    G    2360.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6918;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=N1179;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_31401426_31401522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382188    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2393,193,0
5    31423007    rs2287584    T    C    1235.57    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.119;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=59.8;MQ0=0;MQRankSum=0.457;QD=13.58;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=P1027;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_31422894_31423051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265075    GT:AD:DP:GQ:PL    0/1:44,47:91:99:1266,0,1453
5    31483596    rs10052174    G    A    1105.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.83;MQ=56.41;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265075    GT:AD:DP:GQ:PL    1/1:0,33:33:93.29:1139,93,0
5    31483753    rs68162785    GA    G    526.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=16;HaplotypeScore=284.5034;IndelType=D;MQ=56.56;MQ0=0;QD=8.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265075    GT:AD:DP:GQ:PL    1/1:29,29:62:98.12:568,98,0
5    31485230    rs7712436    T    C    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265075    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
5    31486540    rs7735863    A    G    1993.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265075    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2027,153,0
5    31508933    rs71612226    G    GT    609.73    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.992;DB;DP=37;FS=3.303;HRun=11;HaplotypeScore=91.7985;IndelType=I;MQ=61.16;MQ0=0;MQRankSum=-0.727;QD=16.48;ReadPosRankSum=-0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265075    GT:AD:DP:GQ:PL    0/1:14,23:37:5.99:648,0,6
5    31509057    rs35252785    G    T    239.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265075    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:272,21,0
5    31511106    rs13183642    G    T    3175.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512302    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3208,229,0
5    31515049    .    C    T    876.38    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.352;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.211;QD=17.89;ReadPosRankSum=1.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512302    GT:AD:DP:GQ:PL    0/1:22,27:49:99:906,0,743
5    31529299    rs6859527    A    G    371.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.87;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507438    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:405,30,0
5    31529306    rs6450850    T    C    322.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.05;MQ0=0;MQRankSum=1.448;QD=26.86;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DROSHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507438    GT:AD:DP:GQ:PL    1/1:1,11:12:27.07:355,27,0
5    31532429    rs2291109    A    T    438.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.4;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_31532373_31532580;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325366    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:471,36,0
5    31538692    rs17410000    A    C    402.03    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.462;DB;DP=29;Dels=0.0;FS=1.55;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.109;QD=13.86;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=T235P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_31538367_31538796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325366    GT:AD:DP:GQ:PL    0/1:15,14:29:99:432,0,480
5    31541142    rs17410035    G    T    929.49    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.619;DB;DP=58;Dels=0.0;FS=2.859;HRun=0;HaplotypeScore=0.9967;MQ=58.44;MQ0=0;MQRankSum=-1.134;QD=16.03;ReadPosRankSum=-2.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511208    GT:AD:DP:GQ:PL    0/1:26,32:58:99:959,0,819
5    32000483    rs10054504    T    C    550.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:583,45,0
5    32010384    rs140804184    G    A    1501.58    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.655;DB;DP=102;Dels=0.0;FS=0.809;HRun=0;HaplotypeScore=4.4629;MQ=59.32;MQ0=0;MQRankSum=-0.1;QD=14.72;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    0/1:46,56:102:99:1532,0,1334
5    32037569    rs923834    A    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.32;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,69
5    32052532    rs147464148    A    G    91.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.31;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    0/1:2,4:6:65.47:122,0,65
5    32054092    rs149414    C    G    667.69    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=5.28;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.331;QD=12.14;ReadPosRankSum=-0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    0/1:31,24:55:99:698,0,874
5    32057651    rs161545    G    A    920.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=38.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:953,72,0
5    32058115    rs151861    A    G    833.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=S521;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32057984_32058209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382161    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:866,69,0
5    32060985    rs35665699    T    TATC    965.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=65.7327;IndelType=I;MQ=50.31;MQ0=0;QD=56.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509256    GT:AD:DP:GQ:PL    1/1:3,11:17:51.16:1008,51,0
5    32071325    rs56223765    G    A    210.45    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=16.19;ReadPosRankSum=-2.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    0/1:6,7:13:99:240,0,165
5    32074392    rs2291114    G    A    2124.28    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=5.371;DB;DP=138;Dels=0.0;FS=0.724;HRun=0;HaplotypeScore=5.2894;MQ=60.0;MQ0=0;MQRankSum=-1.052;QD=15.39;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=T1060;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32073938_32074749;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    0/1:70,68:138:99:2154,0,1882
5    32087228    rs157494    C    T    802.73    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=85;Dels=0.0;FS=3.082;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.147;QD=9.44;ReadPosRankSum=1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503961    GT:AD:DP:GQ:PL    0/1:55,30:85:99:833,0,1548
5    32087253    rs157495    A    G    767.44    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.459;DB;DP=88;Dels=0.0;FS=7.229;HRun=1;HaplotypeScore=0.734;MQ=59.97;MQ0=0;MQRankSum=0.725;QD=8.72;ReadPosRankSum=-0.801;SNPEFF_AMINO_ACID_CHANGE=S1034;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32087249_32091281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382161    GT:AD:DP:GQ:PL    0/1:53,35:88:99:797,0,1654
5    32087374    rs157496    A    G    858.77    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=80;Dels=0.0;FS=1.919;HRun=0;HaplotypeScore=1.445;MQ=59.42;MQ0=0;MQRankSum=1.198;QD=10.73;ReadPosRankSum=-1.884;SNPEFF_AMINO_ACID_CHANGE=T1075A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32087249_32091281;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382161    GT:AD:DP:GQ:PL    0/1:46,34:80:99:889,0,1410
5    32087802    rs157497    A    G    303.73    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=38;Dels=0.0;FS=1.273;HRun=6;HaplotypeScore=0.734;MQ=59.39;MQ0=0;MQRankSum=0.564;QD=7.99;ReadPosRankSum=0.137;SNPEFF_AMINO_ACID_CHANGE=P1217;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32087249_32091281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382161    GT:AD:DP:GQ:PL    0/1:20,18:38:99:334,0,561
5    32101168    rs2279232    A    T    495.92    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.64;DB;DP=36;Dels=0.0;FS=14.994;HRun=0;HaplotypeScore=0.8667;MQ=59.36;MQ0=0;MQRankSum=0.557;QD=13.78;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282493    GT:AD:DP:GQ:PL    0/1:20,16:36:99:526,0,621
5    32242381    rs7729256    G    T    152.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504049    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
5    32248077    rs11960898    C    T    429.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.861;DB;DP=34;Dels=0.0;FS=3.581;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=12.63;ReadPosRankSum=1.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264934    GT:AD:DP:GQ:PL    0/1:17,17:34:99:459,0,574
5    32249097    rs78402226    C    T    169.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=9.4;ReadPosRankSum=-0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264934    GT:AD:DP:GQ:PL    0/1:12,6:18:99:199,0,394
5    32263099    rs61418287    G    T    121.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=2.001;QD=8.7;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264934    GT:AD:DP:GQ:PL    0/1:8,6:14:99:152,0,273
5    32270649    rs56306930    A    C    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513622    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:74,0,31
5    32276634    rs57425852    T    C    80.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.05;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264934    GT:AD:DP:GQ:PL    0/1:2,3:5:63.39:110,0,63
5    32379210    rs1862636    G    A    1804.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1837,132,0
5    32379597    rs10637155    T    TAA    660.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=11;HaplotypeScore=120.8488;IndelType=I;MQ=59.75;MQ0=0;QD=21.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    1/1:4,15:31:67.60:703,68,0
5    32385865    rs7718350    G    A    203.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.312;QD=14.54;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    0/1:7,7:14:99:234,0,208
5    32385870    rs7718355    G    A    213.99    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.398;QD=17.83;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    0/1:5,7:12:99:244,0,136
5    32385903    rs4867435    G    A    287.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:320,24,0
5    32388471    rs889318    T    C    173.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=19.26;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    0/1:3,6:9:86.37:203,0,86
5    32388485    rs3811972    G    C    100.23    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=9.11;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    0/1:7,4:11:99:130,0,263
5    32395502    rs2910932    C    T    173.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
5    32400266    rs1051489    A    G    515.61    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.594;DB;DP=33;Dels=0.0;FS=5.871;HRun=0;HaplotypeScore=0.9469;MQ=59.3;MQ0=0;MQRankSum=-0.378;QD=15.62;ReadPosRankSum=-1.639;SNPEFF_AMINO_ACID_CHANGE=I498T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32400112_32400308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382126    GT:AD:DP:GQ:PL    0/1:16,17:33:99:546,0,423
5    32403346    rs4867440    C    T    2855.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_AMINO_ACID_CHANGE=V439I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32403211_32403502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382126    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2889,214,0
5    32415360    rs5867145    TA    T    468.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=5;HaplotypeScore=40.5645;IndelType=D;MQ=57.23;MQ0=0;QD=27.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505204    GT:AD:DP:GQ:PL    1/1:2,15:17:45.13:511,45,0
5    32417694    rs178935    G    A    1146.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=39.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505204    GT:AD:DP:GQ:PL    1/1:0,29:29:87.29:1180,87,0
5    32419849    rs324428    T    C    415.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=14.84;ReadPosRankSum=-0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505204    GT:AD:DP:GQ:PL    0/1:14,14:28:99:446,0,474
5    32444286    rs183443    A    G    59.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=8.56;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265069    GT:AD:DP:GQ:PL    0/1:3,4:7:89.91:90,0,96
5    32523279    rs62363782    A    G    326.35    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.115;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.09;MQ0=2;MQRankSum=2.291;QD=9.89;ReadPosRankSum=-0.264;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2290P7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503901    GT:AD:DP:GQ:PL    0/1:21,12:33:99:356,0,585
5    32523298    rs687659    T    A    507.79    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.262;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=49.49;MQ0=2;MQRankSum=-2.187;QD=14.11;ReadPosRankSum=0.262;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2290P7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503901    GT:AD:DP:GQ:PL    0/1:14,22:36:99:538,0,481
5    32523343    rs2457151    C    T    1435.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=51.79;MQ0=1;QD=35.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2290P7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503901    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1469,114,0
5    32725072    rs1147224    T    C    603.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265074    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:636,51,0
5    32775047    rs1173743    G    T    1732.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265074    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1765,129,0
5    32784776    rs2246427    A    G    575.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506712    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:609,48,0
5    32786389    rs2270915    A    G    4517.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5572;MQ=59.31;MQ0=0;QD=33.71;SNPEFF_AMINO_ACID_CHANGE=N305D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32786340_32786941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415685    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4517,349,0
5    32789392    rs2287661    G    A    514.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415167    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:548,42,0
5    32789852    rs1173756    T    C    2177.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_AMINO_ACID_CHANGE=N115;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_32788945_32791819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026703.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326958    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2211,175,0
5    32888293    rs10042646    G    A    657.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.83;MQ0=0;QD=36.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2218G20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504072    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:691,54,0
5    33441403    rs55759090    A    C    96.01    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.067;QD=12.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265112    GT:AD:DP:GQ:PL    0/1:2,6:8:54.69:126,0,55
5    33455943    rs71600908    AT    A    93.01    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;FS=0.0;HRun=7;HaplotypeScore=22.3267;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=11.63;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505012    GT:AD:DP:GQ:PL    0/1:3,5:8:54.45:132,0,54
5    33457535    rs2270903    T    A    180.09    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=31;Dels=0.0;FS=4.196;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.805;QD=5.81;ReadPosRankSum=-0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505012    GT:AD:DP:GQ:PL    0/1:23,8:31:99:210,0,711
5    33458636    rs3765145    G    A    947.58    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=4.897;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.885;QD=16.92;ReadPosRankSum=-0.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505012    GT:AD:DP:GQ:PL    0/1:26,30:56:99:978,0,740
5    33458833    rs3765146    T    C    186.54    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.206;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.115;QD=9.82;ReadPosRankSum=-0.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505012    GT:AD:DP:GQ:PL    0/1:11,8:19:99:217,0,377
5    33458881    rs3765147    G    A    100.70    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=9.15;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505012    GT:AD:DP:GQ:PL    0/1:7,4:11:99:131,0,265
5    33546113    rs142712098    TA    T    189.22    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.693;DB;DP=41;FS=3.122;HRun=14;HaplotypeScore=270.9334;IndelType=D;MQ=56.54;MQ0=0;MQRankSum=1.172;QD=4.62;ReadPosRankSum=1.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:20,17:41:99:228,0,407
5    33561028    rs113720933    GA    G    419.97    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=0.659;DB;DP=71;FS=0.0;HRun=14;HaplotypeScore=352.7815;IndelType=D;MQ=57.6;MQ0=1;MQRankSum=-0.171;QD=5.83;ReadPosRankSum=0.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:32,36:71:99:459,0,381
5    33589017    rs4242083    A    G    147.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:180,15,0
5    33595996    rs10461924    C    T    688.13    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.215;QD=14.64;ReadPosRankSum=-0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:24,23:47:99:718,0,696
5    33596193    rs10461925    A    G    696.80    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.431;QD=17.0;ReadPosRankSum=1.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:19,22:41:99:727,0,558
5    33596224    rs10461703    C    T    489.77    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.469;DB;DP=28;Dels=0.0;FS=2.049;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.321;QD=17.49;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:12,16:28:99:520,0,353
5    33596243    rs10461704    C    T    289.46    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.023;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.619;QD=15.23;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:8,11:19:99:319,0,230
5    33615904    rs10057235    G    A    985.48    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.169;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.62;MQ0=0;MQRankSum=-1.017;QD=15.16;ReadPosRankSum=1.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:30,35:65:99:1015,0,903
5    33616311    rs4078398    T    C    60.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:91,0,67
5    33624155    rs7710204    G    C    82.21    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=7.47;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:7,4:11:99:112,0,223
5    33624430    rs61748198    A    G    454.53    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.094;DB;DP=42;Dels=0.0;FS=2.846;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.682;QD=10.82;ReadPosRankSum=-0.094;SNPEFF_AMINO_ACID_CHANGE=D683;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_33624336_33624456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504830    GT:AD:DP:GQ:PL    0/1:25,17:42:99:485,0,862
5    33630839    rs4260678    A    G    250.08    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.284;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.415;QD=9.62;ReadPosRankSum=-1.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:15,11:26:99:280,0,416
5    33637596    rs4076945    G    A    974.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,27:27:78.22:1008,78,0
5    33637891    rs4076946    C    A    971.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:1004,75,0
5    33637899    rs4076947    G    A    678.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:712,57,0
5    33642163    rs60892887    G    A    41.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.2;MQ0=0;MQRankSum=-0.358;QD=8.39;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:2,3:5:67.17:72,0,67
5    33643308    rs10065974    A    T    193.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:226,18,0
5    33643395    rs10066043    A    T    952.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,28:28:81.20:985,81,0
5    33643617    rs4866409    C    T    882.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:1,27:28:69.19:916,69,0
5    33648842    rs34079160    GTT    G    986.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=113.9855;IndelType=D;MQ=59.94;MQ0=0;QD=44.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,22:22:63.22:1028,63,0
5    33648906    rs6870538    G    C    1693.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1727,129,0
5    33649220    rs4866353    A    G    164.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
5    33649637    rs4242082    G    A    803.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:837,60,0
5    33649807    rs4504387    C    A    1105.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,33:34:84.26:1139,84,0
5    33649905    rs4621563    G    A    587.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:620,45,0
5    33661909    rs6451007    A    G    711.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.05;MQ0=0;QD=29.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    1/1:0,24:24:66.15:744,66,0
5    33751389    rs5867210    T    TA    106.84    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.002;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=63.9921;IndelType=I;MQ=59.92;MQ0=0;MQRankSum=-0.177;QD=6.68;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352040    GT:AD:DP:GQ:PL    0/1:10,6:16:99:146,0,177
5    33751454    rs1530507    A    T    413.07    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=33;Dels=0.0;FS=5.17;HRun=0;HaplotypeScore=0.6651;MQ=60.33;MQ0=0;MQRankSum=-0.113;QD=12.52;ReadPosRankSum=-0.264;SNPEFF_AMINO_ACID_CHANGE=L230*;SNPEFF_CODON_CHANGE=tTg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_5_33751303_33751653;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000515401    GT:AD:DP:GQ:PL    0/1:18,15:33:99:443,0,611
5    33951693    rs16891982    C    G    4759.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=36.61;SNPEFF_AMINO_ACID_CHANGE=L199F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_33951659_33951782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000510600    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4760,349,0
5    33954511    rs2287949    T    C    686.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=S221G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_33954466_33954609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509381    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:720,57,0
5    33963731    rs3217252    AAAC    A    1465.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=190.1958;IndelType=D;MQ=59.77;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505056    GT:AD:DP:GQ:PL    1/1:5,35:40:99:1508,105,0
5    33964210    rs183671    T    G    460.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296589    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:494,36,0
5    33964241    rs6451048    A    G    170.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296589    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
5    33989518    rs2278008    C    T    1763.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=E262K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_33988789_33989607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMACR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502637    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1796,132,0
5    33998883    rs2287939    A    G    1476.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=L186S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_33998746_33998887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMACR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502637    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1510,114,0
5    33999079    rs10941110    G    A    175.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMACR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335606    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
5    34004707    rs10941112    C    T    4097.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.84;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=G175D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_34004679_34004839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMACR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335606    GT:AD:DP:GQ:PL    1/1:0,119:119:99:4098,301,0
5    34008100    rs3195676    C    T    274.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=V9M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_34007878_34008213;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMACR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335606    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
5    34175809    rs11750628    T    C    57.58    MQFilter40;QDFilter2    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=3.26;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=22.18;MQ0=11;MQRankSum=-1.592;QD=1.09;ReadPosRankSum=0.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1023L17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380721    GT:AD:DP:GQ:PL    0/1:29,24:53:87.58:88,0,276
5    34182623    rs79699565    T    A    167.89    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=2.951;DB;DP=54;Dels=0.0;FS=6.198;HRun=6;HaplotypeScore=0.9999;MQ=40.07;MQ0=0;MQRankSum=-1.53;QD=3.11;ReadPosRankSum=-0.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1023L17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508395    GT:AD:DP:GQ:PL    0/1:40,14:54:99:198,0,1228
5    34182899    rs3928064    G    T    3148.57    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.178;DB;DP=247;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.7057;MQ=19.53;MQ0=74;MQRankSum=-0.305;QD=12.7;ReadPosRankSum=0.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1023L17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508395    GT:AD:DP:GQ:PL    1/1:2,244:247:99:3182,312,0
5    34183081    .    C    CT    403.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=3.135;DP=156;DS;FS=0.0;HRun=20;HaplotypeScore=1430.0564;IndelType=I;MQ=31.27;MQ0=2;MQRankSum=-2.247;QD=2.12;ReadPosRankSum=-4.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1023L17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507274    GT:AD:DP:GQ:PL    1/1:152,22:156:10.69:445,11,0
5    34186435    rs67665840    A    T    171.45    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=35.82;MQ0=0;MQRankSum=-0.489;QD=9.52;ReadPosRankSum=-0.489;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1023L17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507274    GT:AD:DP:GQ:PL    0/1:10,8:18:99:201,0,284
5    34192287    .    T    A    114.96    QDFilter2    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=0.769;DP=250;DS;Dels=0.0;FS=2.883;HRun=3;HaplotypeScore=8.2692;MQ=54.09;MQ0=1;MQRankSum=1.162;QD=0.46;ReadPosRankSum=-0.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1023L17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507274    GT:AD:DP:GQ:PL    0/1:223,26:250:99:145,0,6700
5    34192835    rs67419751    A    G    1668.12    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.183;DB;DP=250;DS;Dels=0.0;FS=0.552;HRun=1;HaplotypeScore=5.9049;MQ=48.43;MQ0=2;MQRankSum=-10.092;QD=6.67;ReadPosRankSum=-0.039;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1023L17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507274    GT:AD:DP:GQ:PL    0/1:157,91:250:99:1698,0,5057
5    34526063    rs10061138    C    A    204.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC114302.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410329    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
5    34757666    rs17521570    G    A    501.58    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.169;DB;DP=36;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.095;QD=13.93;ReadPosRankSum=-1.172;SNPEFF_AMINO_ACID_CHANGE=A36T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_34757573_34757703;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506376    GT:AD:DP:GQ:PL    0/1:17,19:36:99:532,0,585
5    34807928    rs6895634    C    T    375.15    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=69;Dels=0.0;FS=8.062;HRun=1;HaplotypeScore=1.9468;MQ=60.0;MQ0=0;MQRankSum=0.883;QD=5.44;ReadPosRankSum=-1.494;SNPEFF_AMINO_ACID_CHANGE=V107;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_34807905_34807962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506376    GT:AD:DP:GQ:PL    0/1:51,18:69:99:405,0,1668
5    34811137    rs2271522    T    G    2407.98    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.693;DB;DP=192;Dels=0.0;FS=3.389;HRun=0;HaplotypeScore=0.9159;MQ=59.54;MQ0=0;MQRankSum=1.021;QD=12.54;ReadPosRankSum=-0.521;SNPEFF_AMINO_ACID_CHANGE=L149;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_34811117_34811223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506376    GT:AD:DP:GQ:PL    0/1:105,85:192:99:2438,0,3223
5    34818976    rs5867249    GT    G    336.69    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=4.771;DB;DP=40;FS=0.0;HRun=11;HaplotypeScore=114.2973;IndelType=D;MQ=60.35;MQ0=0;MQRankSum=-0.129;QD=8.42;ReadPosRankSum=-1.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265109    GT:AD:DP:GQ:PL    0/1:19,20:40:99:376,0,315
5    34821825    rs10461947    C    T    800.65    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.275;DB;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=59.62;MQ0=0;MQRankSum=-2.642;QD=13.34;ReadPosRankSum=-2.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265109    GT:AD:DP:GQ:PL    0/1:30,29:59:99:831,0,970
5    34824555    rs1048944    G    T    486.95    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.429;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.813;QD=12.81;ReadPosRankSum=-0.843;SNPEFF_AMINO_ACID_CHANGE=A841S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_34823061_34824596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000512629    GT:AD:DP:GQ:PL    0/1:22,16:38:99:517,0,713
5    34840841    rs6451173    A    G    5668.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.55;DB;DP=168;Dels=0.0;FS=4.493;HRun=0;HaplotypeScore=0.7887;MQ=59.73;MQ0=0;MQRankSum=-0.197;QD=33.74;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=H22R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_34840770_34840844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC23L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505624    GT:AD:DP:GQ:PL    1/1:1,167:168:99:5669,391,0
5    34845423    rs114023140    A    C    32.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.17;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC23L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505624    GT:AD:DP:GQ:PL    0/1:2,2:4:62.67:63,0,73
5    34845473    rs336486    C    A    599.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC23L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505624    GT:AD:DP:GQ:PL    1/1:0,20:20:51.12:632,51,0
5    34850570    rs11383944    T    TG    747.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=32.7864;IndelType=I;MQ=61.78;MQ0=0;QD=41.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC23L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508377    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:790,54,0
5    34868792    rs10461949    C    T    39.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC23L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505624    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
5    34918415    rs37434    A    G    536.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336767    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:569,48,0
5    34923435    rs37431    A    C    96.73    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=6.91;ReadPosRankSum=-1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510834    GT:AD:DP:GQ:PL    0/1:9,5:14:99:127,0,278
5    34925328    rs71600960    T    TA    273.95    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.863;DB;DP=44;FS=0.0;HRun=1;HaplotypeScore=296.6546;IndelType=I;MQ=52.77;MQ0=0;MQRankSum=1.085;QD=6.23;ReadPosRankSum=-0.332;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIX1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000336767    GT:AD:DP:GQ:PL    0/1:35,8:44:99:313,0,384
5    34930201    rs27160    T    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336767    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
5    34936577    rs37426    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303525    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    34945944    rs37442    A    T    1250.79    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.191;DB;DP=114;Dels=0.0;FS=1.741;HRun=0;HaplotypeScore=1.399;MQ=59.6;MQ0=0;MQRankSum=-0.202;QD=10.97;ReadPosRankSum=0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303525    GT:AD:DP:GQ:PL    0/1:63,49:114:99:1281,0,1986
5    34954588    rs37437    T    C    1076.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=37.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506762    GT:AD:DP:GQ:PL    1/1:0,29:29:81.27:1109,81,0
5    34956157    .    C    CA    110.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.934;DP=23;FS=0.0;HRun=23;HaplotypeScore=273.4234;IndelType=I;MQ=31.32;MQ0=0;MQRankSum=-0.255;QD=4.79;ReadPosRankSum=0.764;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342382    GT:AD:DP:GQ:PL    1/1:14,8:23:11.85:152,12,0
5    34956294    rs163723    C    T    1365.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.99;MQ0=0;QD=29.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342382    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1399,111,0
5    34998778    rs16899972    C    A    343.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=26.39;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000510428    GT:AD:DP:GQ:PL    1/1:0,13:13:27.09:376,27,0
5    34998877    rs16899974    C    A    443.81    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.19;DB;DP=36;Dels=0.0;FS=7.749;HRun=1;HaplotypeScore=0.9332;MQ=59.36;MQ0=0;MQRankSum=-1.521;QD=12.33;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=V498L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_34998206_34998931;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    0/1:17,19:36:99:474,0,431
5    35010138    rs466067    A    G    2056.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=G435;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35010105_35010254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2090,159,0
5    35013904    rs57876430    AAG    A    91.99    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=193.016;IndelType=D;MQ=55.65;MQ0=0;MQRankSum=2.965;QD=4.6;ReadPosRankSum=-0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    0/1:14,6:20:99:131,0,289
5    35025770    rs344515    G    A    332.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
5    35026683    rs344513    A    G    218.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:251,21,0
5    35032769    rs237252    G    A    295.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505542    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
5    35033605    rs180749    G    A    1525.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.66;SNPEFF_AMINO_ACID_CHANGE=T212I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35033565_35033658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1558,114,0
5    35033706    rs2291702    T    C    197.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.781;DB;DP=24;Dels=0.0;FS=2.593;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.493;QD=8.24;ReadPosRankSum=0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    0/1:14,10:24:99:228,0,486
5    35034094    rs344158    C    A    501.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:534,39,0
5    35034130    rs455423    C    T    417.23    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.375;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.102;QD=18.97;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    0/1:8,14:22:99:447,0,271
5    35034473    rs4703495    T    C    469.78    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.686;DB;DP=37;Dels=0.0;FS=13.742;HRun=1;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.744;QD=12.7;ReadPosRankSum=-2.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    0/1:19,18:37:99:500,0,680
5    35034498    rs186936    A    T    1033.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1067,78,0
5    35035579    rs344156    A    G    174.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
5    35035609    rs180748    A    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
5    35036997    rs37368    C    T    934.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,27:27:72.22:968,72,0
5    35037230    rs72734512    C    A    660.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:694,54,0
5    35039437    rs2279651    A    G    4961.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_AMINO_ACID_CHANGE=H118;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35039429_35039613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4962,364,0
5    35039486    rs37370    C    T    4263.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=S102N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35039429_35039613;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231420    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4264,316,0
5    35641582    rs6897513    A    C    1164.38    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.095;DB;DP=78;Dels=0.0;FS=7.612;HRun=0;HaplotypeScore=1.8633;MQ=59.41;MQ0=0;MQRankSum=-0.805;QD=14.93;ReadPosRankSum=0.155;SNPEFF_AMINO_ACID_CHANGE=N71H;SNPEFF_CODON_CHANGE=Aac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35641533_35641785;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282469    GT:AD:DP:GQ:PL    0/1:38,40:78:99:1194,0,1142
5    35644621    rs7706444    T    C    222.72    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.34;DB;DP=34;Dels=0.0;FS=1.574;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=6.55;ReadPosRankSum=-1.05;SNPEFF_AMINO_ACID_CHANGE=I193;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35644457_35644627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282469    GT:AD:DP:GQ:PL    0/1:21,13:34:99:253,0,711
5    35654711    rs2270558    C    T    991.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=60;Dels=0.0;FS=3.607;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.219;QD=16.53;ReadPosRankSum=-1.833;SNPEFF_AMINO_ACID_CHANGE=D230;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35654642_35654743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510777    GT:AD:DP:GQ:PL    0/1:24,36:60:99:1022,0,639
5    35659355    rs9292598    T    C    336.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502454    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:370,30,0
5    35739960    rs10043875    A    G    1188.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356031    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1222,102,0
5    35763895    rs6876874    T    C    651.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356031    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:685,57,0
5    35763916    rs6895801    A    G    596.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356031    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:629,48,0
5    35763968    rs6896356    G    T    167.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356031    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
5    35776239    rs11749262    A    G    294.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356031    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
5    35789164    rs1494576    G    A    3535.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303129    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3535,268,0
5    35792356    rs7730148    A    C    348.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303129    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:381,30,0
5    35799994    rs3822735    A    G    1712.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303129    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1745,138,0
5    35857177    rs1353252    G    C    2397    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303115    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2430,178,0
5    35857235    rs1494561    C    G    1530.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303115    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1564,114,0
5    35857262    rs1353250    A    G    1291.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303115    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1325,99,0
5    35857308    rs5867289    T    TC    711.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=92.4636;IndelType=I;MQ=60.19;MQ0=0;QD=44.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303115    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:754,48,0
5    35861068    rs1494558    T    C    3355.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9297;MQ=59.54;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=I66T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35860954_35861092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303115    GT:AD:DP:GQ:PL    1/1:0,99:100:99:3356,250,0
5    35861152    rs11567705    C    G    1489    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8094;MQ=58.25;MQ0=0;QD=37.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508941    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1522,111,0
5    35861268    rs969129    T    G    332.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508941    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
5    35871190    rs1494555    G    A    2194.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_AMINO_ACID_CHANGE=V138I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35871158_35871315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303115    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2228,160,0
5    35874575    rs6897932    C    T    1595.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.52;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=T244I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35874551_35874644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303115    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1629,120,0
5    35875593    rs987106    A    T    486.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.42;SNPEFF_AMINO_ACID_CHANGE=L26;SNPEFF_CODON_CHANGE=ctA/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35875516_35875689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL7R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505875    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:520,39,0
5    35910419    rs1445899    C    T    1479.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.03;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397366    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1513,111,0
5    35910529    rs1445898    C    T    2174.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_AMINO_ACID_CHANGE=R85Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35910468_35910645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPSL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397366    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2208,160,0
5    35921069    rs6859892    T    C    1286.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397366    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1319,102,0
5    35955525    rs10472268    C    T    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513233    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
5    35955682    rs768622    C    G    624.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513233    GT:AD:DP:GQ:PL    1/1:0,18:18:51.10:658,51,0
5    35956026    rs768621    T    C    548.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333811    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:581,42,0
5    35957202    rs1478449    A    G    132.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333811    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
5    35962984    rs1070895    A    G    326.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=W251R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_35960858_35963053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333811    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:359,27,0
5    35967917    rs1374014    G    C    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274278    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    35991039    rs11746242    G    C    399.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274278    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:432,33,0
5    36037778    rs2247611    G    A    407.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504954    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:440,33,0
5    36039441    rs2453302    A    G    297.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504954    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:330,24,0
5    36049675    rs2441080    G    A    32.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGT3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282507    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:62,0,30
5    36124495    .    T    C    40.99    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
5    36136349    rs267757    A    G    406.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=13.54;ReadPosRankSum=0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503535    GT:AD:DP:GQ:PL    0/1:15,15:30:99:436,0,532
5    36136675    rs267758    C    T    260.72    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=15.34;ReadPosRankSum=-1.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503535    GT:AD:DP:GQ:PL    0/1:8,9:17:99:291,0,163
5    36137620    rs267759    A    G    417.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503535    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:450,33,0
5    36141386    rs13156321    T    A    221.33    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.67;QD=17.03;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296603    GT:AD:DP:GQ:PL    0/1:5,8:13:99:251,0,162
5    36142589    rs267764    T    A    298.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.283;DB;DP=35;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.7887;MQ=59.34;MQ0=0;MQRankSum=-1.017;QD=8.53;ReadPosRankSum=-0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296603    GT:AD:DP:GQ:PL    0/1:20,15:35:99:329,0,621
5    36142648    rs12658867    A    G    674.27    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.81;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9512;MQ=59.14;MQ0=0;MQRankSum=0.133;QD=12.49;ReadPosRankSum=-0.738;SNPEFF_AMINO_ACID_CHANGE=N76;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_36142604_36142701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBRD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296603    GT:AD:DP:GQ:PL    0/1:28,26:54:99:704,0,753
5    36143392    rs267766    C    T    292.24    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.32;MQ0=0;MQRankSum=1.135;QD=8.6;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=L20;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_36143278_36143508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBRD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296603    GT:AD:DP:GQ:PL    0/1:22,12:34:99:322,0,673
5    36152742    rs33671    A    G    629.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274254    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:662,57,0
5    36166827    rs71600999    C    CT    206.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=15;HaplotypeScore=128.7326;IndelType=I;MQ=50.17;MQ0=0;QD=12.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274254    GT:AD:DP:GQ:PL    1/1:7,8:16:32.41:249,32,0
5    36168582    rs7736391    T    C    1419.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274254    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1452,129,0
5    36176874    rs40030    G    A    75.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.78;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274254    GT:AD:DP:GQ:PL    0/1:3,4:7:92.85:105,0,93
5    36177269    rs2287935    C    A    606.57    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.085;DB;DP=41;Dels=0.0;FS=3.017;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.928;QD=14.79;ReadPosRankSum=1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274254    GT:AD:DP:GQ:PL    0/1:22,19:41:99:637,0,679
5    36180422    rs3804437    A    G    1274.36    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=5.447;DB;DP=80;Dels=0.0;FS=2.858;HRun=0;HaplotypeScore=1.8332;MQ=59.71;MQ0=0;MQRankSum=0.044;QD=15.93;ReadPosRankSum=0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274254    GT:AD:DP:GQ:PL    0/1:39,40:80:99:1304,0,1190
5    36201336    rs7705396    C    T    1192.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282512    GT:AD:DP:GQ:PL    1/1:0,32:32:93.30:1226,93,0
5    36207424    rs2303163    G    T    866.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282512    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:900,66,0
5    36212217    rs3761974    C    T    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282512    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    36217764    rs111441491    G    GTTAATCA    3424.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=142.3021;IndelType=I;MQ=35.95;MQ0=0;QD=114.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511088    GT:AD:DP:GQ:PL    1/1:9,19:30:90.31:3425,90,0
5    36217997    rs3761973    T    A    1025.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NADKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282512    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1059,84,0
5    36249742    rs116800709    A    G    704.58    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=47;Dels=0.0;FS=4.38;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=2.183;QD=14.99;ReadPosRankSum=0.787;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296604    GT:AD:DP:GQ:PL    0/1:21,26:47:99:735,0,657
5    36253937    rs4869473    G    A    1448.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515759    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1482,108,0
5    36255364    rs6451268    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515759    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    36255455    rs188855107    T    G    87.46    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=9.72;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515759    GT:AD:DP:GQ:PL    0/1:4,5:9:99:117,0,143
5    36256815    rs11739323    A    G    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515759    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    36260976    rs6881086    T    A    549.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505865    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:583,45,0
5    36261866    rs1862543    A    T    181.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505865    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:215,18,0
5    36262256    rs2362977    G    C    846.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505865    GT:AD:DP:GQ:PL    1/1:0,23:23:69.16:879,69,0
5    36262317    rs2362978    A    C    125.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505865    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
5    36269551    rs1035480    G    C    2467.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=T70R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_36269492_36269569;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296604    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2501,184,0
5    36271491    rs34447149    CT    C    452.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=10;HaplotypeScore=60.8854;IndelType=D;MQ=59.69;MQ0=0;QD=18.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296604    GT:AD:DP:GQ:PL    1/1:6,19:25:56.98:494,57,0
5    36301369    rs884692    T    G    610.23    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.663;DB;DP=56;Dels=0.0;FS=11.767;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.117;QD=10.9;ReadPosRankSum=-1.999;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296604    GT:AD:DP:GQ:PL    0/1:33,23:56:99:640,0,1144
5    36301374    rs884693    T    C    688.69    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=58;Dels=0.0;FS=11.376;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.095;QD=11.87;ReadPosRankSum=-0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296604    GT:AD:DP:GQ:PL    0/1:35,23:58:99:719,0,1185
5    36301420    rs884694    G    T    944.33    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=5.791;DB;DP=85;Dels=0.0;FS=9.981;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-2.38;QD=11.11;ReadPosRankSum=-1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296604    GT:AD:DP:GQ:PL    0/1:50,35:85:99:974,0,1431
5    36629801    .    G    GA    152.86    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DP=23;FS=0.0;HRun=13;HaplotypeScore=135.2246;IndelType=I;MQ=55.55;MQ0=0;MQRankSum=0.489;QD=6.65;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505202    GT:AD:DP:GQ:PL    0/1:13,9:23:99:192,0,111
5    36671360    .    T    C    71.25    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.909;DP=14;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=5.09;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509272    GT:AD:DP:GQ:PL    0/1:10,4:14:99:101,0,360
5    36683903    rs56039629    C    T    245.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.093;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.137;QD=9.11;ReadPosRankSum=-1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265113    GT:AD:DP:GQ:PL    0/1:15,12:27:99:276,0,505
5    36958085    rs72408289    CAA    C    115.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=18;HaplotypeScore=85.3941;IndelType=D;MQ=53.95;MQ0=0;QD=9.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    1/1:2,5:12:25.61:158,26,0
5    36985303    rs3822471    A    G    2160.37    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DB;DP=164;Dels=0.0;FS=10.834;HRun=0;HaplotypeScore=2.9826;MQ=59.72;MQ0=0;MQRankSum=-0.219;QD=13.17;ReadPosRankSum=1.058;SNPEFF_AMINO_ACID_CHANGE=N674S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_36984778_36986403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    0/1:91,73:164:99:2190,0,2892
5    37001074    rs78827246    A    G    1126.31    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.238;DB;DP=84;Dels=0.0;FS=3.175;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.126;QD=13.41;ReadPosRankSum=-0.173;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503274    GT:AD:DP:GQ:PL    0/1:47,37:84:99:1156,0,1488
5    37007629    rs159753    T    C    669.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.734;QD=33.47;ReadPosRankSum=0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    1/1:1,19:20:18.61:702,19,0
5    37010404    rs35011787    A    G    41.27    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.217;QD=2.58;ReadPosRankSum=-0.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    0/1:12,4:16:71.26:71,0,383
5    37010448    rs62654863    C    T    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
5    37019354    rs300060    G    A    715.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:749,54,0
5    37024519    rs3100685    A    T    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
5    37024595    rs116198732    G    C    308.96    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.003;QD=23.77;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    0/1:4,9:13:99:339,0,118
5    37027576    rs75728277    G    GT    142.98    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=29;FS=0.0;HRun=13;HaplotypeScore=159.3369;IndelType=I;MQ=57.57;MQ0=0;MQRankSum=-0.239;QD=4.93;ReadPosRankSum=0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    0/1:17,9:29:99:182,0,195
5    37045841    rs301859    A    G    525.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:558,42,0
5    37061261    rs188541    A    G    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282516    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
5    37120469    rs76897187    C    T    682.46    PASS    AB=0.281;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=32;Dels=0.0;FS=1.883;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.168;QD=21.33;ReadPosRankSum=0.084;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509957    GT:AD:DP:GQ:PL    0/1:9,23:32:99:712,0,286
5    37125560    rs139274257    CAGATA    C    866.12    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=4.19;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=168.2422;IndelType=D;MQ=56.5;MQ0=0;MQRankSum=-0.448;QD=27.94;ReadPosRankSum=-0.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274258    GT:AD:DP:GQ:PL    0/1:15,16:31:99:905,0,845
5    37154119    .    C    A    451.29    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.187;DP=27;Dels=0.0;FS=3.769;HRun=1;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.87;QD=16.71;ReadPosRankSum=0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510830    GT:AD:DP:GQ:PL    0/1:11,16:27:99:481,0,286
5    37179341    rs6860727    G    A    369.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274258    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:403,30,0
5    37179974    rs72736756    A    C    184.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=18.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274258    GT:AD:DP:GQ:PL    0/1:4,6:10:99:214,0,139
5    37196028    rs72736758    C    T    772.01    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.889;DB;DP=47;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=2.9972;MQ=59.51;MQ0=0;MQRankSum=0.259;QD=16.43;ReadPosRankSum=0.236;SNPEFF_AMINO_ACID_CHANGE=G1248D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_37195960_37196098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425232    GT:AD:DP:GQ:PL    0/1:18,29:47:99:802,0,570
5    37206621    rs12658479    T    C    290.69    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=18.17;ReadPosRankSum=1.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274258    GT:AD:DP:GQ:PL    0/1:6,10:16:99:321,0,196
5    37247700    rs6876576    G    A    2671.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274258    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2705,202,0
5    37294473    rs1045908    T    C    848.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.55;SNPEFF_AMINO_ACID_CHANGE=L1232;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_37294431_37294567;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513532    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:881,63,0
5    37309371    rs3835198    TAGA    T    1171.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=116.5325;IndelType=D;MQ=59.08;MQ0=0;QD=41.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231498    GT:AD:DP:GQ:PL    1/1:3,25:28:75.25:1214,75,0
5    37318295    rs217797    G    T    404.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231498    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:438,36,0
5    37331985    rs13170025    G    T    696.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231498    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:729,54,0
5    37341352    rs13172306    T    C    945.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=28.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507233    GT:AD:DP:GQ:PL    1/1:0,33:33:78.23:978,78,0
5    37364443    rs217852    C    T    870.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=L29;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_37364349_37364486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434056    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:903,66,0
5    37364693    rs217851    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231498    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    37392490    rs12659064    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    37396287    rs34642822    G    GT    131.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=8;HaplotypeScore=9.0677;IndelType=I;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265107    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:173,15,0
5    37605122    rs150300664    CT    C    57.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=10;FS=0.0;HRun=11;HaplotypeScore=33.4953;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=5.71;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265107    GT:AD:DP:GQ:PL    0/1:5,5:10:96.17:96,0,101
5    37702906    rs4431371    C    T    74.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.63;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504564    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:105,0,31
5    37703022    rs41270339    T    G    529.47    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.606;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.88;MQ0=0;MQRankSum=-0.07;QD=13.58;ReadPosRankSum=-0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265107    GT:AD:DP:GQ:PL    0/1:18,21:39:99:559,0,620
5    37724932    rs3214462    CATT    C    1015    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=1.871;DB;DP=62;FS=5.858;HRun=0;HaplotypeScore=378.3788;IndelType=D;MQ=57.14;MQ0=0;MQRankSum=-0.071;QD=16.37;ReadPosRankSum=1.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265107    GT:AD:DP:GQ:PL    0/1:37,25:62:99:1054,0,2154
5    37724990    rs7444391    G    A    3462.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=57.83;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265107    GT:AD:DP:GQ:PL    1/1:0,107:108:99:3463,283,0
5    37752497    rs2973079    A    G    108.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265107    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:141,12,0
5    37814148    rs3749692    A    G    308.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.585;DB;DP=20;Dels=0.0;FS=7.929;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.501;QD=15.41;ReadPosRankSum=-1.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381826    GT:AD:DP:GQ:PL    0/1:8,12:20:99:338,0,278
5    38406251    rs113400125    C    T    982.78    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.831;DB;DP=60;Dels=0.0;FS=3.775;HRun=0;HaplotypeScore=0.8321;MQ=59.46;MQ0=0;MQRankSum=-0.736;QD=16.38;ReadPosRankSum=0.25;SNPEFF_AMINO_ACID_CHANGE=R12C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_38406228_38406343;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFLAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336740    GT:AD:DP:GQ:PL    0/1:29,31:60:99:1013,0,772
5    38407273    rs111320305    A    AT    187.84    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=18;FS=2.762;HRun=0;HaplotypeScore=43.4141;IndelType=I;MQ=60.6;MQ0=0;MQRankSum=1.171;QD=10.44;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFLAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322350    GT:AD:DP:GQ:PL    0/1:12,6:18:99:227,0,450
5    38407888    rs2961882    T    C    316.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=3.133;DB;DP=24;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.966;QD=13.2;ReadPosRankSum=1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFLAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322350    GT:AD:DP:GQ:PL    0/1:14,10:24:99:347,0,393
5    38425008    rs3812046    G    A    369.45    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=3.651;DB;DP=36;Dels=0.0;FS=1.654;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.314;QD=10.26;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFLAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322350    GT:AD:DP:GQ:PL    0/1:22,14:36:99:399,0,628
5    38435130    rs2956598    T    G    226.97    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.376;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.03;QD=10.32;ReadPosRankSum=0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFLAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322350    GT:AD:DP:GQ:PL    0/1:12,10:22:99:257,0,433
5    38482504    rs59816159    C    T    126.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508477    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
5    38496262    rs2162885    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263409    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
5    38496779    rs3729741    C    T    134.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263409    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
5    38504303    rs16903989    A    T    702.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263409    GT:AD:DP:GQ:PL    1/1:0,19:19:57.12:736,57,0
5    38510481    rs34968906    AC    A    355.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=31.699;IndelType=D;MQ=60.83;MQ0=0;QD=27.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263409    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:398,39,0
5    38512154    rs1037033    T    C    169.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263409    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
5    38523305    rs1822815    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506990    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    38528969    rs71604901    CACACACACACAG    C    410.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=63.456;IndelType=D;MQ=42.29;MQ0=0;QD=82.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263409    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:452,15,0
5    38530485    rs11345598    CA    C    247.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=26.2568;IndelType=D;MQ=60.0;MQ0=0;QD=22.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263409    GT:AD:DP:GQ:PL    1/1:1,10:11:30.05:290,30,0
5    38823358    rs581668    C    A    40.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.55;MQ0=1;MQRankSum=-0.988;QD=5.77;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091435.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431698    GT:AD:DP:GQ:PL    0/1:4,3:7:70.37:70,0,111
5    38876573    rs357271    T    C    331.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274276    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
5    38876584    rs71621888    C    T    104.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=13.07;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274276    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,138
5    38881460    rs617938    G    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274276    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
5    38881538    rs2278325    C    T    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274276    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
5    38904363    rs1239334    C    T    99.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.41;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274276    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,133
5    38917574    rs357260    G    A    301.05    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=21.5;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274276    GT:AD:DP:GQ:PL    0/1:4,10:14:96.59:331,0,97
5    38923171    rs357293    T    C    190.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.098;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=10.57;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513831    GT:AD:DP:GQ:PL    0/1:10,8:18:99:220,0,336
5    38931919    rs357277    G    A    290.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=19.35;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274276    GT:AD:DP:GQ:PL    0/1:6,9:15:99:320,0,204
5    38932466    rs357278    A    C    88.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.82;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274276    GT:AD:DP:GQ:PL    0/1:6,4:10:99:118,0,207
5    38950729    rs142010480    T    C    1018.64    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.73;DB;DP=69;Dels=0.0;FS=8.154;HRun=1;HaplotypeScore=1.9664;MQ=58.92;MQ0=0;MQRankSum=0.559;QD=14.76;ReadPosRankSum=0.03;SNPEFF_AMINO_ACID_CHANGE=D1074G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_38949814_38950822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:36,33:69:99:1049,0,1113
5    38950776    rs2115949    G    A    2218.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=58.92;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=S1058;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_38949814_38950822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2252,172,0
5    38953427    rs2115948    T    C    617.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503698    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:650,48,0
5    38953447    rs2115947    T    A    723.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=59.14;MQ0=0;QD=26.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503698    GT:AD:DP:GQ:PL    1/1:0,27:27:66.14:757,66,0
5    38953665    rs34092511    G    GA    2430.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.849;DB;DP=91;FS=0.0;HRun=9;HaplotypeScore=280.6405;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=0.237;QD=26.71;ReadPosRankSum=-0.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503698    GT:AD:DP:GQ:PL    1/1:16,75:91:99:2473,202,0
5    38954994    rs9292726    T    C    687.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:720,54,0
5    38955796    rs2043112    G    A    976.86    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.356;DB;DP=69;Dels=0.0;FS=2.183;HRun=1;HaplotypeScore=0.8667;MQ=59.73;MQ0=0;MQRankSum=0.761;QD=14.16;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=S837F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_38955697_38955806;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1007,0,982
5    38958750    rs6868087    A    G    813.62    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=38;Dels=0.0;FS=7.505;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.323;QD=21.41;ReadPosRankSum=1.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509567    GT:AD:DP:GQ:PL    0/1:13,25:38:99:844,0,353
5    38958968    rs6868591    A    C    358.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=27.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509567    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:391,33,0
5    38959794    rs2115946    T    C    453.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509567    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:487,36,0
5    38960325    rs75126321    T    TA    260.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=15.1549;IndelType=I;MQ=57.05;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509567    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:303,21,0
5    38962543    rs7729745    A    G    1558.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509567    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1592,126,0
5    38971865    rs13165709    A    G    115.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=14.43;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:3,5:8:99:145,0,102
5    38971912    rs7732615    T    A    346.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:380,30,0
5    38990876    rs9800169    T    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
5    38990901    rs10534988    GAT    G    208.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=103.497;IndelType=D;MQ=29.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    1/1:1,5:6:18.06:251,18,0
5    38990957    rs56213103    T    G    143.41    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.73;MQ0=0;MQRankSum=0.922;QD=20.49;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:2,5:7:15.38:173,0,15
5    39002484    .    TTG    T    458.84    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DP=31;FS=0.0;HRun=0;HaplotypeScore=177.8375;IndelType=D;MQ=57.28;MQ0=1;MQRankSum=-0.427;QD=14.34;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:22,10:31:99:498,0,297
5    39002502    .    GTA    G    156.65    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=3.222;DP=37;FS=0.0;HRun=0;HaplotypeScore=275.5933;IndelType=D;MQ=56.44;MQ0=1;MQRankSum=0.27;QD=4.12;ReadPosRankSum=1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:28,10:37:99:196,0,469
5    39002517    .    TAC    T    523.77    PASS    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=2.329;DP=43;FS=0.0;HRun=0;HaplotypeScore=259.7757;IndelType=D;MQ=56.94;MQ0=1;MQRankSum=-1.165;QD=11.9;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:35,9:43:99:563,0,629
5    39021369    rs13177690    G    A    180.21    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=16.38;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:5,6:11:99:210,0,169
5    39074296    rs2303808    G    C    391.83    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=37;Dels=0.0;FS=5.584;HRun=0;HaplotypeScore=0.0;MQ=54.8;MQ0=0;MQRankSum=1.491;QD=10.59;ReadPosRankSum=3.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RICTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296782    GT:AD:DP:GQ:PL    0/1:20,16:37:99:422,0,546
5    39108309    rs377022    A    G    401.33    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.029;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.735;QD=9.56;ReadPosRankSum=0.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542542    GT:AD:DP:GQ:PL    0/1:26,16:42:99:431,0,777
5    39108322    rs430630    A    G    419.69    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.671;DB;DP=43;Dels=0.0;FS=1.209;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.334;QD=9.76;ReadPosRankSum=1.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542542    GT:AD:DP:GQ:PL    0/1:27,16:43:99:450,0,781
5    39119222    rs427829    T    G    581.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:615,48,0
5    39119561    rs394930    T    C    186.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:220,18,0
5    39119723    rs379707    C    A    890.38    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=67;Dels=0.0;FS=2.021;HRun=2;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.925;QD=13.29;ReadPosRankSum=-0.997;SNPEFF_AMINO_ACID_CHANGE=V672F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_39119637_39119736;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    0/1:34,33:67:99:920,0,1025
5    39124508    rs2303807    C    T    191.81    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=21.31;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    0/1:2,7:9:58.80:222,0,59
5    39124593    rs2303806    A    T    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
5    39127960    rs56166211    G    C    299.90    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=28;Dels=0.0;FS=3.9;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;MQRankSum=-2.739;QD=10.71;ReadPosRankSum=-0.864;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    0/1:16,11:28:99:330,0,593
5    39134169    rs68032871    T    C    561.55    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.534;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.088;QD=13.06;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    0/1:24,19:43:99:592,0,822
5    39134295    rs4957318    C    T    2593.13    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=2.09;DB;DP=173;Dels=0.0;FS=3.626;HRun=0;HaplotypeScore=2.9122;MQ=60.0;MQ0=0;MQRankSum=-1.009;QD=14.99;ReadPosRankSum=1.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    0/1:87,86:173:99:2623,0,2773
5    39134602    rs2303805    A    C    256.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=21.34;ReadPosRankSum=-1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    0/1:4,8:12:99:286,0,131
5    39134735    rs6868792    C    T    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    0/1:2,2:4:63.47:70,0,63
5    39141240    rs35730995    G    A    821.55    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.539;DB;DP=55;Dels=0.0;FS=2.342;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.087;QD=14.94;ReadPosRankSum=0.017;SNPEFF_AMINO_ACID_CHANGE=S432;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_39141197_39141243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    0/1:24,31:55:99:852,0,615
5    39153881    rs7717006    G    A    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351578    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
5    39285139    rs261738    T    A    48.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.01;ReadPosRankSum=0.322;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263408    GT:AD:DP:GQ:PL    0/1:5,3:8:78.05:78,0,180
5    39364474    rs6864541    A    G    454.98    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.181;DB;DP=32;Dels=0.0;FS=1.496;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.18;QD=13.79;ReadPosRankSum=-0.661;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263408    GT:AD:DP:GQ:PL    0/1:14,18:32:99:485,0,355
5    39375082    rs2686162    C    T    624.12    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.425;DB;DP=43;Dels=0.0;FS=2.105;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=14.51;ReadPosRankSum=1.907;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320816    GT:AD:DP:GQ:PL    0/1:21,22:43:99:654,0,714
5    39377418    rs2738238    G    A    389.51    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=43;Dels=0.0;FS=1.614;HRun=1;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.339;QD=9.06;ReadPosRankSum=-1.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320816    GT:AD:DP:GQ:PL    0/1:27,16:43:99:420,0,808
5    39383521    rs6884342    C    A    72.14    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.03;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505968    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:102,0,29
5    39388523    rs62358399    C    T    355.19    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.241;DB;DP=41;Dels=0.0;FS=11.289;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.536;QD=8.66;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503513    GT:AD:DP:GQ:PL    0/1:27,14:41:99:385,0,806
5    39390061    rs2855512    C    A    784.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503513    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:817,60,0
5    39393625    rs2071037    G    A    666.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=39.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513052    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:699,51,0
5    39719446    rs10512714    A    G    1698.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.74;MQ0=0;QD=34.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2120M21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504674    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1732,135,0
5    39719553    rs9292749    T    C    1596.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2120M21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504674    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1630,120,0
5    40772071    rs837103    C    G    556.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008810.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296800    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:590,45,0
5    40798064    .    A    G    229.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=19.1;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008810.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296800    GT:AD:DP:GQ:PL    0/1:3,9:12:85.76:259,0,86
5    40834864    rs3816959    T    C    136.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=13.65;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274242    GT:AD:DP:GQ:PL    0/1:4,6:10:99:166,0,126
5    40852451    rs188934    C    G    770.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_AMINO_ACID_CHANGE=T339;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_40852276_40855456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254691    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:803,63,0
5    40853048    rs16870407    C    T    818.03    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.179;DB;DP=89;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=3.8828;MQ=59.79;MQ0=0;MQRankSum=1.575;QD=9.19;ReadPosRankSum=-1.229;SNPEFF_AMINO_ACID_CHANGE=S538;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_40852276_40855456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254691    GT:AD:DP:GQ:PL    0/1:55,34:89:99:848,0,1671
5    40854682    rs1697938    T    C    54.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=9.07;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509771    GT:AD:DP:GQ:PL    0/1:3,3:6:84.39:84,0,97
5    40928574    rs2443040    A    C    34.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313164    GT:AD:DP:GQ:PL    0/1:4,3:7:64.82:65,0,143
5    40928792    rs2459467    T    A    256.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=21;Dels=0.0;FS=9.84;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.746;QD=12.23;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313164    GT:AD:DP:GQ:PL    0/1:12,9:21:99:287,0,390
5    40948139    rs2250856    T    A    193.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=21.52;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508185    GT:AD:DP:GQ:PL    0/1:3,6:9:95.38:224,0,95
5    40949997    rs1450656    C    T    2251.36    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DB;DP=151;Dels=0.0;FS=1.424;HRun=4;HaplotypeScore=5.1599;MQ=60.0;MQ0=0;MQRankSum=0.669;QD=14.91;ReadPosRankSum=0.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508185    GT:AD:DP:GQ:PL    0/1:71,80:151:99:2281,0,2318
5    40955561    rs1063499    G    C    2868.73    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.714;DB;DP=203;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8311;MQ=59.77;MQ0=0;MQRankSum=0.19;QD=14.13;ReadPosRankSum=-1.576;SNPEFF_AMINO_ACID_CHANGE=S229T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_40955489_40955655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440677    GT:AD:DP:GQ:PL    0/1:103,100:203:99:2899,0,3121
5    40958027    rs2652323    G    A    1302.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515157    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1335,99,0
5    40964682    rs2455304    C    T    597.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313164    GT:AD:DP:GQ:PL    1/1:0,18:19:48.14:631,48,0
5    40964684    rs2443037    A    G    624.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313164    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:658,51,0
5    40964852    rs13157656    A    C    2029.03    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=5.939;DB;DP=152;Dels=0.0;FS=0.633;HRun=1;HaplotypeScore=4.6991;MQ=59.42;MQ0=0;MQRankSum=0.192;QD=13.35;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=T427P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_40964843_40964975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440677    GT:AD:DP:GQ:PL    0/1:80,71:152:99:2059,0,2375
5    40972371    rs2305313    A    G    55.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=13.86;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440677    GT:AD:DP:GQ:PL    0/1:1,3:4:29.74:85,0,30
5    40979662    rs6860438    G    T    130.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513922    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
5    40979698    rs35148902    CT    C    154.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.448;DB;DP=18;FS=0.0;HRun=14;HaplotypeScore=185.0339;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=0.869;QD=8.6;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513922    GT:AD:DP:GQ:PL    1/1:2,16:18:7.72:196,8,0
5    40980086    rs1450664    T    C    314.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513922    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:348,27,0
5    40981375    rs3749519    G    A    441.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494960    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:474,36,0
5    40981380    rs7731615    T    C    478.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494960    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:512,42,0
5    40981689    rs1061429    C    A    830.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494960    GT:AD:DP:GQ:PL    1/1:0,26:26:69.19:863,69,0
5    40998196    rs704040    T    C    1969.33    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=1.287;DB;DP=151;Dels=0.0;FS=8.583;HRun=0;HaplotypeScore=2.9518;MQ=60.0;MQ0=0;MQRankSum=-0.477;QD=13.04;ReadPosRankSum=0.608;SNPEFF_AMINO_ACID_CHANGE=Q1127;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_40998123_40998260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506092    GT:AD:DP:GQ:PL    0/1:75,76:151:99:1999,0,2134
5    40998235    rs722575    C    T    1692.57    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=4.206;DB;DP=131;Dels=0.0;FS=5.567;HRun=0;HaplotypeScore=0.9734;MQ=59.82;MQ0=0;MQRankSum=0.279;QD=12.92;ReadPosRankSum=-1.459;SNPEFF_AMINO_ACID_CHANGE=P1114;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_40998123_40998260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506092    GT:AD:DP:GQ:PL    0/1:69,62:131:99:1723,0,1988
5    40998814    rs2876850    T    A    408.12    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DB;DP=26;Dels=0.0;FS=3.388;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=15.7;ReadPosRankSum=1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:12,14:26:99:438,0,367
5    40998851    rs2329435    G    A    131.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=10.11;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:7,6:13:99:161,0,243
5    40999900    rs1376175    T    A    1904.69    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.383;DB;DP=172;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8218;MQ=59.49;MQ0=0;MQRankSum=-0.096;QD=11.07;ReadPosRankSum=1.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:98,74:172:99:1935,0,2820
5    41000152    rs1530812    G    A    210.33    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=19.12;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:4,7:11:99:240,0,125
5    41000169    rs1376176    T    C    104.72    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.009;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=5.24;ReadPosRankSum=-0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:13,6:20:99:135,0,412
5    41000192    rs3817324    A    T    462.57    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.558;QD=14.02;ReadPosRankSum=-1.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:17,16:33:99:493,0,576
5    41000243    rs1376177    G    A    944.60    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.138;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=59.67;MQ0=0;MQRankSum=0.495;QD=13.49;ReadPosRankSum=1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:37,33:70:99:975,0,1055
5    41000343    rs1001420    G    A    2281.66    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.284;DB;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.85;MQ0=0;MQRankSum=0.259;QD=14.53;ReadPosRankSum=0.252;SNPEFF_AMINO_ACID_CHANGE=Y1042;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41000322_41000453;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506092    GT:AD:DP:GQ:PL    0/1:82,75:157:99:2312,0,2670
5    41004396    rs7712140    G    T    3884.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9996;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3885,295,0
5    41004406    rs7711722    A    T    1719.44    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.812;DB;DP=123;Dels=0.0;FS=3.472;HRun=0;HaplotypeScore=2.7883;MQ=60.0;MQ0=0;MQRankSum=0.114;QD=13.98;ReadPosRankSum=1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:66,57:123:99:1749,0,2309
5    41004807    rs2305314    C    T    516.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.004;DB;DP=42;Dels=0.0;FS=12.613;HRun=0;HaplotypeScore=1.5317;MQ=58.89;MQ0=0;MQRankSum=1.106;QD=12.3;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:24,18:42:99:547,0,787
5    41005791    rs10941529    T    C    1132.17    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.177;DB;DP=89;Dels=0.0;FS=1.91;HRun=0;HaplotypeScore=1.8899;MQ=59.74;MQ0=0;MQRankSum=2.073;QD=12.72;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:46,43:89:99:1162,0,1395
5    41006006    rs2329436    T    G    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    41008650    rs2271705    A    G    1002.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,31:31:87.24:1036,87,0
5    41008780    rs2271704    A    G    2200.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.6;MQ0=0;QD=31.43;SNPEFF_AMINO_ACID_CHANGE=L1179P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41008708_41008895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399564    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2233,172,0
5    41009242    rs1450658    C    T    1149.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,32:32:90.25:1182,90,0
5    41009282    rs10061334    G    A    535.33    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.036;DB;DP=45;Dels=0.0;FS=1.621;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.24;QD=11.9;ReadPosRankSum=-0.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:24,21:45:99:565,0,852
5    41009899    rs1878290    A    G    292.96    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.396;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.171;QD=8.62;ReadPosRankSum=0.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:22,12:34:99:323,0,826
5    41012615    rs6876879    A    G    277.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.252;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7219;MQ=59.03;MQ0=0;MQRankSum=-0.596;QD=11.55;ReadPosRankSum=-0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:9,15:24:99:307,0,305
5    41012616    rs6876880    A    C    252.96    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.139;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=59.11;MQ0=0;MQRankSum=0.749;QD=9.73;ReadPosRankSum=-0.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:11,15:26:99:283,0,346
5    41018452    rs10054110    A    T    1160.49    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=2.471;DB;DP=66;Dels=0.0;FS=2.277;HRun=3;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;MQRankSum=-0.395;QD=17.58;ReadPosRankSum=-1.065;SNPEFF_AMINO_ACID_CHANGE=N473K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41018443_41018532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506092    GT:AD:DP:GQ:PL    0/1:26,40:66:99:1190,0,848
5    41018677    rs6862217    T    C    1023.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1057,81,0
5    41018922    .    TG    T    1384.29    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=7.078;DP=128;FS=0.0;HRun=4;HaplotypeScore=319.3816;IndelType=D;MQ=59.76;MQ0=0;MQRankSum=0.028;QD=10.81;ReadPosRankSum=1.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:78,50:128:99:1423,0,2761
5    41019229    rs896118    A    T    392.22    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.013;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.463;QD=16.34;ReadPosRankSum=2.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:11,13:24:99:422,0,366
5    41032998    rs325831    A    G    1628.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.48;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1662,129,0
5    41033112    rs4957367    G    A    3651.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3651,274,0
5    41033931    rs10434576    C    T    648.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.909;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.364;QD=28.2;ReadPosRankSum=0.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:2,21:23:23.78:682,24,0
5    41033992    rs67027762    G    T    249.96    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.49;DB;DP=34;Dels=0.0;FS=3.485;HRun=0;HaplotypeScore=1.873;MQ=58.63;MQ0=0;MQRankSum=-1.351;QD=7.35;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:23,10:34:99:280,0,742
5    41034181    rs325833    A    G    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
5    41039000    rs325849    A    G    2561.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2594,199,0
5    41039430    rs7700901    G    C    1477.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1511,108,0
5    41042204    rs16870720    T    A    1054.38    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=71;Dels=0.0;FS=3.246;HRun=1;HaplotypeScore=2.9667;MQ=60.0;MQ0=0;MQRankSum=0.969;QD=14.85;ReadPosRankSum=-1.727;SNPEFF_AMINO_ACID_CHANGE=D203V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41042194_41042310;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506092    GT:AD:DP:GQ:PL    0/1:33,38:71:99:1084,0,968
5    41042284    rs325854    G    T    572.80    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=43;Dels=0.0;FS=9.709;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=13.32;ReadPosRankSum=0.201;SNPEFF_AMINO_ACID_CHANGE=T176;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41042194_41042310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506092    GT:AD:DP:GQ:PL    0/1:21,22:43:99:603,0,767
5    41045730    rs67477008    CT    C    296.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.129;DB;DP=36;FS=0.0;HRun=11;HaplotypeScore=158.0169;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=0.807;QD=8.23;ReadPosRankSum=0.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508575    GT:AD:DP:GQ:PL    0/1:17,18:36:99:335,0,450
5    41045768    rs325860    G    A    1202.34    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.28;MQ0=0;MQRankSum=1.005;QD=15.41;ReadPosRankSum=0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508575    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1232,0,1279
5    41045835    rs6864243    C    G    2142.69    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=168;Dels=0.0;FS=1.49;HRun=1;HaplotypeScore=3.591;MQ=59.86;MQ0=0;MQRankSum=0.701;QD=12.75;ReadPosRankSum=-1.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508575    GT:AD:DP:GQ:PL    0/1:94,74:168:99:2173,0,3175
5    41049389    rs325863    T    C    1466.92    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.883;DB;DP=125;Dels=0.0;FS=0.734;HRun=2;HaplotypeScore=1.81;MQ=60.0;MQ0=0;MQRankSum=0.221;QD=11.74;ReadPosRankSum=-0.405;SNPEFF_AMINO_ACID_CHANGE=T202;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41049382_41049538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:70,55:125:99:1497,0,2218
5    41049397    rs325864    C    T    1674.61    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=130;Dels=0.0;FS=0.728;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.234;QD=12.88;ReadPosRankSum=-0.41;SNPEFF_AMINO_ACID_CHANGE=V200I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41049382_41049538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:71,58:130:99:1705,0,2106
5    41050999    rs325866    C    T    504.08    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=28;Dels=0.0;FS=2.124;HRun=1;HaplotypeScore=0.734;MQ=59.17;MQ0=0;MQRankSum=2.716;QD=18.0;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:12,16:28:99:534,0,371
5    41055888    rs61609768    C    T    2300.48    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.535;DB;DP=162;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2673;MQ=59.31;MQ0=0;MQRankSum=0.794;QD=14.2;ReadPosRankSum=1.186;SNPEFF_AMINO_ACID_CHANGE=R330Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41055844_41055957;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399564    GT:AD:DP:GQ:PL    0/1:83,79:162:99:2330,0,2463
5    41056998    rs648563    A    G    126.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=58.05;MQ0=0;MQRankSum=0.143;QD=10.52;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:6,6:12:99:156,0,176
5    41057562    rs618334    T    C    124.99    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=7.35;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:12,5:17:99:155,0,322
5    41057919    rs13160583    G    C    42.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.3;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296803    GT:AD:DP:GQ:PL    0/1:1,2:3:18.64:73,0,19
5    41061715    rs1023840    C    T    1698.79    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.229;DB;DP=157;Dels=0.0;FS=3.959;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.863;QD=10.82;ReadPosRankSum=1.718;SNPEFF_AMINO_ACID_CHANGE=W191*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_5_41061672_41061826;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399564    GT:AD:DP:GQ:PL    0/1:92,65:157:99:1729,0,2765
5    41061716    rs865093    A    G    1694.99    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.229;DB;DP=155;Dels=0.0;FS=5.004;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-1.127;QD=10.94;ReadPosRankSum=1.85;SNPEFF_AMINO_ACID_CHANGE=W191R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41061672_41061826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399564    GT:AD:DP:GQ:PL    0/1:91,64:155:99:1725,0,2799
5    41149235    rs1014587    A    G    555.20    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=1.017;DB;DP=58;Dels=0.0;FS=8.152;HRun=1;HaplotypeScore=2.8474;MQ=59.6;MQ0=0;MQRankSum=-0.302;QD=9.57;ReadPosRankSum=-0.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461473    GT:AD:DP:GQ:PL    0/1:35,23:58:99:585,0,1254
5    41149284    rs1014588    G    A    1296.94    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.892;DB;DP=96;Dels=0.0;FS=6.839;HRun=0;HaplotypeScore=0.7887;MQ=59.52;MQ0=0;MQRankSum=0.303;QD=13.51;ReadPosRankSum=-0.804;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461473    GT:AD:DP:GQ:PL    0/1:52,44:96:99:1327,0,1754
5    41154150    rs4957374    A    C    705.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511470    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:738,57,0
5    41158671    rs10075985    T    C    257.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473450    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:290,21,0
5    41158863    rs6866352    G    A    1135.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=D627;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41158776_41158887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263413    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1169,84,0
5    41158967    rs140790579    A    G    176.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=2.246;HRun=0;HaplotypeScore=0.5784;MQ=58.33;MQ0=0;MQRankSum=-1.792;QD=12.59;ReadPosRankSum=-1.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473450    GT:AD:DP:GQ:PL    0/1:7,7:14:99:206,0,251
5    41199959    rs1801033    G    T    830.06    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.462;QD=16.28;ReadPosRankSum=-2.289;SNPEFF_AMINO_ACID_CHANGE=A119E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_41199870_41200014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263413    GT:AD:DP:GQ:PL    0/1:26,25:51:99:860,0,773
5    41381901    rs35812696    T    TC    505.37    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.282;DB;DP=27;FS=6.058;HRun=5;HaplotypeScore=56.1852;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=-0.469;QD=18.72;ReadPosRankSum=-1.949;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328457    GT:AD:DP:GQ:PL    0/1:11,16:27:99:544,0,274
5    41382647    rs76547469    A    T    539.82    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.053;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=15.0;ReadPosRankSum=-1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328457    GT:AD:DP:GQ:PL    0/1:16,20:36:99:570,0,481
5    41382681    rs319013    G    T    355.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.538;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.359;QD=13.68;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328457    GT:AD:DP:GQ:PL    0/1:13,13:26:99:386,0,457
5    41382691    rs545358    C    A    685.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328457    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:719,54,0
5    41475766    rs318039    C    T    2378.32    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=3.823;DB;DP=193;Dels=0.0;FS=1.79;HRun=1;HaplotypeScore=7.7593;MQ=59.88;MQ0=0;MQRankSum=0.27;QD=12.32;ReadPosRankSum=-0.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328457    GT:AD:DP:GQ:PL    0/1:109,83:193:99:2408,0,3351
5    42565843    rs12521020    C    T    67.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.46;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230882    GT:AD:DP:GQ:PL    0/1:6,3:9:97.13:97,0,222
5    42566166    rs10941579    A    T    130.86    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.625;QD=7.7;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230882    GT:AD:DP:GQ:PL    0/1:8,9:17:99:161,0,293
5    42700044    rs6179    A    G    1127.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=G164;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_42699926_42700104;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357703    GT:AD:DP:GQ:PL    1/1:0,32:32:90.26:1161,90,0
5    42713472    rs33972388    TG    T    1283.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=101.92;IndelType=D;MQ=60.25;MQ0=0;QD=38.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230882    GT:AD:DP:GQ:PL    1/1:1,32:33:96.32:1325,96,0
5    42717992    rs2973015    A    G    171.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356276    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
5    42718335    rs76362844    G    A    251.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356276    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
5    42718427    rs3834253    G    GTT    1301.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=7;HaplotypeScore=98.59;IndelType=I;MQ=59.95;MQ0=0;QD=44.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356276    GT:AD:DP:GQ:PL    1/1:2,26:29:84.28:1344,84,0
5    42719239    rs6180    A    C    1029.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_AMINO_ACID_CHANGE=I357L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_42718555_42719893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537449    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1062,78,0
5    42762420    rs2972783    T    C    158.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=22.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC152;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361970    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:191,15,0
5    42769844    rs1109882    G    T    896.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC152;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361970    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:929,72,0
5    42779686    rs35457913    G    GA    288.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=9;HaplotypeScore=39.3249;IndelType=I;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC152;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361970    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:331,30,0
5    42779736    rs1423656    T    G    147.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC152;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361970    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:181,15,0
5    43161351    rs71627581    G    A    858.37    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.263;DB;DP=64;Dels=0.0;FS=3.495;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.04;QD=13.41;ReadPosRankSum=-2.163;SNPEFF_AMINO_ACID_CHANGE=R124;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_43161351_43161708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF131;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306938    GT:AD:DP:GQ:PL    0/1:31,33:64:99:888,0,940
5    43245922    rs13176855    C    T    2161.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_AMINO_ACID_CHANGE=H15;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_43245184_43246169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC114947.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326035    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2194,160,0
5    43292908    rs55794239    C    A    401.01    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=34;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=1.9662;MQ=59.32;MQ0=0;MQRankSum=-0.162;QD=11.79;ReadPosRankSum=-0.414;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508319    GT:AD:DP:GQ:PL    0/1:17,16:34:99:431,0,585
5    43296165    rs12520012    G    A    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507004    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:71,0,34
5    43297032    rs3733768    C    T    984.37    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=74;Dels=0.0;FS=2.819;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.524;QD=13.3;ReadPosRankSum=0.856;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507004    GT:AD:DP:GQ:PL    0/1:35,38:74:99:1014,0,1093
5    43297144    rs3733769    A    G    1623.72    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=101;Dels=0.0;FS=2.78;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.273;QD=16.08;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=Y222;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_43297104_43297268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545275    GT:AD:DP:GQ:PL    0/1:46,55:101:99:1654,0,1432
5    43298515    rs6863360    C    T    169.65    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.811;QD=8.93;ReadPosRankSum=-0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507293    GT:AD:DP:GQ:PL    0/1:12,7:19:99:200,0,371
5    43298557    rs35239179    C    T    382.83    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.569;DB;DP=26;Dels=0.0;FS=3.16;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=14.72;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511774    GT:AD:DP:GQ:PL    0/1:14,12:26:99:413,0,436
5    43492265    rs6876588    T    C    783.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:817,60,0
5    43492978    rs10039298    G    A    2215.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=36.93;SNPEFF_AMINO_ACID_CHANGE=N443;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_43492822_43492992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2249,166,0
5    43493592    rs7732089    T    C    804.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=38.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:838,63,0
5    43493922    rs34007811    G    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    43496198    rs10068354    G    A    651.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.78;MQ0=0;QD=26.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    1/1:0,24:25:57.17:685,57,0
5    43496228    rs113508677    A    ACAGT    1413.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=127.8912;IndelType=I;MQ=28.63;MQ0=0;QD=44.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    1/1:3,27:21:60.20:1455,60,0
5    43496229    .    C    T    33.41    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.938;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.44;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=23.4142;MQ=28.63;MQ0=0;MQRankSum=2.141;QD=1.04;ReadPosRankSum=-2.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    0/1:30,2:32:63.41:63,0,83
5    43496641    rs4576155    T    A    327.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=23.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:361,33,0
5    43509348    rs6872851    T    A    1501.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=T32S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_43509247_43509477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306862    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1535,111,0
5    43509462    rs11415989    T    TC    929.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=41.2505;IndelType=I;MQ=60.98;MQ0=0;QD=42.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509489    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:972,66,0
5    43527673    rs4318791    C    G    252.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.27;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306846    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:286,21,0
5    43533963    rs114943096    A    G    452.30    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.359;QD=14.13;ReadPosRankSum=1.624;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511321    GT:AD:DP:GQ:PL    0/1:17,15:32:99:482,0,619
5    43533992    rs11741521    A    G    685.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=36.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511321    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:719,54,0
5    43536855    rs10941641    T    C    1336.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=54.35;MQ0=0;QD=38.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508537    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1370,105,0
5    43536904    rs35862047    T    TA    776.22    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.982;DB;DP=61;FS=6.798;HRun=11;HaplotypeScore=279.089;IndelType=I;MQ=56.82;MQ0=0;MQRankSum=2.101;QD=12.72;ReadPosRankSum=0.413;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508537    GT:AD:DP:GQ:PL    0/1:28,31:61:99:815,0,293
5    43556487    rs55641556    C    A    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306846    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
5    43704542    rs55984047    C    G    89.86    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DB;DP=21;Dels=0.0;FS=2.574;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.454;QD=4.28;ReadPosRankSum=-1.693;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264663    GT:AD:DP:GQ:PL    0/1:16,5:21:99:120,0,505
5    44809162    rs3747479    G    C    58.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.956;QD=7.35;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=C33S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_44809027_44809665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507110    GT:AD:DP:GQ:PL    0/1:5,3:8:88.82:89,0,140
5    49695048    rs4030567    C    T    640.88    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.273;DB;DP=52;Dels=0.0;FS=15.445;HRun=0;HaplotypeScore=0.7887;MQ=43.91;MQ0=0;MQRankSum=1.189;QD=12.32;ReadPosRankSum=-1.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506190    GT:AD:DP:GQ:PL    0/1:30,22:52:99:671,0,749
5    49698180    rs13172025    G    A    1215.68    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.32;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.0;MQ0=4;MQRankSum=-1.65;QD=25.87;ReadPosRankSum=-1.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506190    GT:AD:DP:GQ:PL    1/1:1,46:47:66.08:1249,66,0
5    49698985    .    AC    A    1263.63    PASS    AC=2;AF=1.00;AN=2;DP=56;FS=0.0;HRun=1;HaplotypeScore=287.0273;IndelType=D;MQ=55.97;MQ0=0;QD=20.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506190    GT:AD:DP:GQ:PL    1/1:55,6:56:99:1306,163,0
5    49701519    rs34041280    CTGT    C    1009.72    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=6.465;DB;DP=58;FS=1.121;HRun=0;HaplotypeScore=221.426;IndelType=D;MQ=54.38;MQ0=0;MQRankSum=1.191;QD=17.41;ReadPosRankSum=0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303221    GT:AD:DP:GQ:PL    0/1:31,27:58:99:1049,0,1684
5    49701755    rs2271236    A    G    344.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.07;MQ0=1;QD=24.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303221    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:377,30,0
5    50046077    rs189998276    T    G    457.61    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.3;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8782;MQ=60.0;MQ0=0;MQRankSum=-0.941;QD=14.76;ReadPosRankSum=0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PARP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281631    GT:AD:DP:GQ:PL    0/1:13,18:31:99:488,0,380
5    50046139    rs282553    A    G    154.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=12.88;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PARP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281631    GT:AD:DP:GQ:PL    0/1:6,6:12:99:185,0,218
5    50055456    rs4029424    C    CT    170.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DB;DP=29;FS=8.129;HRun=16;HaplotypeScore=182.151;IndelType=I;MQ=49.7;MQ0=0;MQRankSum=-0.072;QD=5.69;ReadPosRankSum=-2.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PARP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281631    GT:AD:DP:GQ:PL    1/1:19,6:29:4.15:210,4,0
5    50057729    rs282547    G    A    1037.56    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.317;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=58.67;MQ0=0;MQRankSum=-1.545;QD=14.82;ReadPosRankSum=-1.005;SNPEFF_AMINO_ACID_CHANGE=G119;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_50057655_50057732;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PARP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505554    GT:AD:DP:GQ:PL    0/1:34,36:70:99:1068,0,1103
5    50122645    rs71612384    GT    G    249.39    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=1.135;DB;DP=59;FS=7.425;HRun=14;HaplotypeScore=244.4896;IndelType=D;MQ=58.82;MQ0=0;MQRankSum=-0.743;QD=4.23;ReadPosRankSum=1.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PARP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281631    GT:AD:DP:GQ:PL    0/1:39,20:59:99:288,0,458
5    50680233    rs4865658    G    A    35.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=0.736;QD=11.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230658    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:66,0,24
5    50683655    rs2288468    T    C    35.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=5.94;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230658    GT:AD:DP:GQ:PL    0/1:3,3:6:65.60:66,0,106
5    50685505    rs2303751    A    G    395.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.435;DB;DP=40;Dels=0.0;FS=4.377;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.921;QD=9.89;ReadPosRankSum=0.102;SNPEFF_AMINO_ACID_CHANGE=S115G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_50685480_50685766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505475    GT:AD:DP:GQ:PL    0/1:20,20:40:99:425,0,591
5    52096889    rs1499280    C    A    2211.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_AMINO_ACID_CHANGE=L221M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52095719_52096954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PELO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274311    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2245,166,0
5    52097183    rs2059202    A    G    777.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:811,60,0
5    52157374    rs2447867    T    C    1781.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.44;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=C92;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52157281_52157393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    1/1:0,56:57:99:1814,144,0
5    52193287    rs1531545    C    T    322.09    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.197;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=14.0;ReadPosRankSum=-0.591;SNPEFF_AMINO_ACID_CHANGE=A364;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52193286_52193359;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    0/1:12,11:23:99:352,0,355
5    52193414    rs76199528    C    CA    326.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=21.0015;IndelType=I;MQ=62.36;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:369,27,0
5    52194327    rs76972328    A    G    106.98    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.361;QD=11.89;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,181
5    52204943    rs1478441    C    T    531.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.71;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:564,42,0
5    52205790    rs3733882    G    C    196.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=24.51;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    0/1:2,6:8:52.91:226,0,53
5    52223350    rs923837    A    G    329.61    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.323;QD=9.99;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    0/1:19,14:33:99:360,0,613
5    52223516    rs10038773    C    A    1247.64    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.777;DB;DP=65;Dels=0.0;FS=2.673;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.569;QD=19.19;ReadPosRankSum=-0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    0/1:23,42:65:99:1278,0,782
5    52235582    rs10940280    A    T    233.55    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=18;Dels=0.0;FS=5.035;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=12.98;ReadPosRankSum=-0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    0/1:10,8:18:99:264,0,363
5    52235802    rs1904165    T    G    399.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=30.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:433,33,0
5    52235854    rs2447874    T    A    246.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:280,21,0
5    52243361    rs3764923    A    C    123.43    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.358;DB;DP=19;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.89;QD=6.5;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282588    GT:AD:DP:GQ:PL    0/1:12,7:19:99:153,0,438
5    52248291    rs1054085    T    C    138.46    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=12.59;ReadPosRankSum=0.678;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504669    GT:AD:DP:GQ:PL    0/1:4,7:11:99:168,0,138
5    52322369    rs3212666    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    52322721    rs26678    G    T    342.95    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.547;DB;DP=28;Dels=0.0;FS=6.551;HRun=1;HaplotypeScore=1.6988;MQ=59.17;MQ0=0;MQRankSum=0.138;QD=12.25;ReadPosRankSum=-1.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:15,13:28:99:373,0,451
5    52337908    rs3212441    C    T    329.24    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=10.62;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:19,12:31:99:359,0,649
5    52338083    rs1363192    T    G    484.78    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.076;QD=14.69;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:18,15:33:99:515,0,576
5    52341064    rs1421937    A    G    77.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=15.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:2,3:5:58.62:108,0,59
5    52344046    rs3212486    G    A    377.01    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=3.078;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9831;MQ=60.0;MQ0=0;MQRankSum=0.036;QD=17.95;ReadPosRankSum=0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:8,13:21:99:407,0,219
5    52344610    rs1421933    A    G    458.88    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.423;QD=11.47;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:23,17:40:99:489,0,739
5    52347369    rs1126643    C    T    878.52    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=71;Dels=0.0;FS=0.956;HRun=2;HaplotypeScore=0.7887;MQ=59.74;MQ0=0;MQRankSum=0.424;QD=12.37;ReadPosRankSum=0.494;SNPEFF_AMINO_ACID_CHANGE=F253;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52347241_52347389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:37,34:71:99:909,0,1039
5    52351236    rs2910962    C    T    102.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=11.43;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:4,5:9:99:133,0,143
5    52351242    rs2974987    A    G    147.61    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.45;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,101
5    52351413    rs1062535    G    A    1133.77    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.991;DB;DP=82;Dels=0.0;FS=13.58;HRun=3;HaplotypeScore=1.986;MQ=59.72;MQ0=0;MQRankSum=-0.194;QD=13.83;ReadPosRankSum=-1.37;SNPEFF_AMINO_ACID_CHANGE=T275;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52351368_52351518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:45,37:82:99:1164,0,1243
5    52351746    rs3212522    G    A    243.75    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.418;QD=11.08;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:12,10:22:99:274,0,396
5    52354103    rs996765    A    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
5    52355854    rs2303127    T    C    594.45    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.021;DB;DP=41;Dels=0.0;FS=2.837;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=14.5;ReadPosRankSum=1.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:21,20:41:99:624,0,596
5    52366138    rs2112290    G    A    532.04    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=28;Dels=0.0;FS=2.716;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.929;QD=19.0;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:11,17:28:99:562,0,289
5    52367666    rs2287872    A    T    123.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
5    52367706    rs2287871    T    C    182.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=15.2;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:6,6:12:99:212,0,206
5    52368922    rs984966    T    A    328.34    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.323;DB;DP=40;Dels=0.0;FS=3.507;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.278;QD=8.21;ReadPosRankSum=-0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:25,15:40:99:358,0,821
5    52370174    rs3212591    G    A    107.53    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.097;QD=4.89;ReadPosRankSum=0.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:17,5:22:99:138,0,588
5    52379277    rs2303122    C    T    584.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.822;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.37;QD=18.27;ReadPosRankSum=1.538;SNPEFF_AMINO_ACID_CHANGE=F1084;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52379170_52379283;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296585    GT:AD:DP:GQ:PL    0/1:12,20:32:99:614,0,280
5    52781376    rs71598857    GTT    G    64.85    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.827;DB;DP=27;FS=0.0;HRun=16;HaplotypeScore=174.256;IndelType=D;MQ=56.01;MQ0=0;MQRankSum=0.827;QD=2.4;ReadPosRankSum=1.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491717    GT:AD:DP:GQ:PL    0/1:14,7:27:99:104,0,440
5    52781597    rs722910    A    T    623.53    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=73;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.9665;MQ=59.05;MQ0=0;MQRankSum=0.542;QD=8.54;ReadPosRankSum=1.108;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491717    GT:AD:DP:GQ:PL    0/1:39,34:73:99:654,0,1336
5    52856504    rs2279516    G    C    378.58    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.145;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-0.727;QD=11.83;ReadPosRankSum=0.686;SNPEFF_AMINO_ACID_CHANGE=V4;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52856465_52856590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296684    GT:AD:DP:GQ:PL    0/1:17,15:32:99:409,0,403
5    52856716    rs1532163    A    G    97.96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.88;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296684    GT:AD:DP:GQ:PL    0/1:5,4:9:99:128,0,177
5    52899166    rs72062223    C    CT    43.94    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=10;FS=0.0;HRun=15;HaplotypeScore=132.1986;IndelType=I;MQ=45.55;MQ0=0;MQRankSum=-0.72;QD=4.39;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296684    GT:AD:DP:GQ:PL    0/1:3,5:10:6.45:83,0,6
5    52942083    rs31304    A    C    928.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.69;SNPEFF_AMINO_ACID_CHANGE=G62;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52942063_52942235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506765    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:961,69,0
5    52942197    rs31303    A    G    514.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.19;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.39;QD=10.29;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=R100;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_52942063_52942235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506765    GT:AD:DP:GQ:PL    0/1:25,25:50:99:544,0,843
5    52954280    rs1490769    G    A    31.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.49;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296684    GT:AD:DP:GQ:PL    0/1:5,2:7:61.39:61,0,181
5    52954514    rs535277    T    G    337.73    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.039;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=21.11;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296684    GT:AD:DP:GQ:PL    0/1:5,11:16:99:368,0,152
5    53606295    rs35941    T    C    331.23    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=26;Dels=0.0;FS=3.524;HRun=1;HaplotypeScore=0.9916;MQ=59.28;MQ0=0;MQRankSum=-0.521;QD=12.74;ReadPosRankSum=0.463;SNPEFF_AMINO_ACID_CHANGE=R5;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53606262_53606403;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARL15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504924    GT:AD:DP:GQ:PL    0/1:11,15:26:99:361,0,277
5    53751554    .    G    C    108.73    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.786;DP=39;Dels=0.0;FS=18.195;HRun=2;HaplotypeScore=3.2489;MQ=41.96;MQ0=0;MQRankSum=-1.806;QD=2.79;ReadPosRankSum=0.582;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_5_53751445_53752207;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302005    GT:AD:DP:GQ:PL    0/1:15,24:39:99:139,0,187
5    53751557    .    A    C    127.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.507;DP=39;Dels=0.0;FS=23.314;HRun=2;HaplotypeScore=3.2489;MQ=41.96;MQ0=0;MQRankSum=-2.662;QD=3.27;ReadPosRankSum=0.81;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_5_53751445_53752207;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302005    GT:AD:DP:GQ:PL    0/1:13,26:39:99:157,0,193
5    53751901    rs7699    G    A    1095.22    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.322;DB;DP=85;Dels=0.0;FS=5.799;HRun=0;HaplotypeScore=0.9832;MQ=59.46;MQ0=0;MQRankSum=0.6;QD=12.88;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=L94;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53751445_53752207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302005    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1125,0,1239
5    53751988    rs7823    T    C    644.12    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.631;DB;DP=59;Dels=0.0;FS=1.014;HRun=0;HaplotypeScore=0.9933;MQ=59.22;MQ0=0;MQRankSum=-0.376;QD=10.92;ReadPosRankSum=-0.437;SNPEFF_AMINO_ACID_CHANGE=G123;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53751445_53752207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302005    GT:AD:DP:GQ:PL    0/1:34,25:59:99:674,0,1120
5    53814052    rs2548615    T    C    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.94;SNPEFF_AMINO_ACID_CHANGE=P90;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53813593_53816833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326277    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
5    53814394    rs2548614    T    C    252.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.21;SNPEFF_AMINO_ACID_CHANGE=G204;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53813593_53816833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326277    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:285,21,0
5    53815066    rs2548613    C    A    391.21    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;MQRankSum=-0.675;QD=15.05;ReadPosRankSum=0.259;SNPEFF_AMINO_ACID_CHANGE=I428;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53813593_53816833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326277    GT:AD:DP:GQ:PL    0/1:11,15:26:99:421,0,343
5    53815219    rs35241631    G    A    458.81    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.063;DB;DP=44;Dels=0.0;FS=1.237;HRun=1;HaplotypeScore=0.8667;MQ=59.48;MQ0=0;MQRankSum=-0.088;QD=10.43;ReadPosRankSum=-0.389;SNPEFF_AMINO_ACID_CHANGE=E479;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53813593_53816833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326277    GT:AD:DP:GQ:PL    0/1:27,16:44:99:489,0,916
5    53815240    rs61739378    G    C    865.56    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=41;Dels=0.0;FS=5.422;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=21.11;ReadPosRankSum=0.151;SNPEFF_AMINO_ACID_CHANGE=S486;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53813593_53816833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326277    GT:AD:DP:GQ:PL    0/1:14,27:41:99:896,0,356
5    53815495    rs2548612    A    C    799.53    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.332;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=59.6;MQ0=0;MQRankSum=-0.487;QD=14.03;ReadPosRankSum=-0.647;SNPEFF_AMINO_ACID_CHANGE=E571D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_53813593_53816833;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326277    GT:AD:DP:GQ:PL    0/1:30,27:57:99:830,0,1043
5    53815722    rs2565014    G    A    330.15    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=17;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=19.42;ReadPosRankSum=1.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343017    GT:AD:DP:GQ:PL    0/1:7,10:17:99:360,0,163
5    54275119    rs3776032    A    G    928.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.809;DB;DP=70;Dels=0.0;FS=4.048;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.879;QD=13.27;ReadPosRankSum=-1.21;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381403    GT:AD:DP:GQ:PL    0/1:35,35:70:99:959,0,1183
5    54277655    rs11745146    G    A    65.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.84;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381403    GT:AD:DP:GQ:PL    0/1:3,3:6:95.06:95,0,106
5    54280898    rs999289    C    G    188.33    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.732;QD=11.08;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381403    GT:AD:DP:GQ:PL    0/1:10,7:17:99:218,0,354
5    54403957    rs3104233    T    C    947.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_AMINO_ACID_CHANGE=M121T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54403953_54404222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274306    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:980,75,0
5    54404015    rs1875506    C    T    1073.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_AMINO_ACID_CHANGE=D140;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54403953_54404222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274306    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1107,81,0
5    54404057    rs1051846    C    G    592.21    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=16.92;ReadPosRankSum=2.566;SNPEFF_AMINO_ACID_CHANGE=G154;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54403953_54404222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274306    GT:AD:DP:GQ:PL    0/1:16,19:35:99:622,0,496
5    54406118    rs3104231    A    G    245.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296733    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
5    54410120    rs3104230    A    C    3299.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_AMINO_ACID_CHANGE=S454A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54409976_54410146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC20B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322374    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3299,247,0
5    54423032    rs10043273    C    G    960.46    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.169;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.309;QD=12.81;ReadPosRankSum=-1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296733    GT:AD:DP:GQ:PL    0/1:38,37:75:99:990,0,1307
5    54433167    rs3111199    C    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331730    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    54433393    rs336081    G    A    648.12    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.129;DB;DP=64;Dels=0.0;FS=8.743;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.194;QD=10.13;ReadPosRankSum=-0.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331730    GT:AD:DP:GQ:PL    0/1:38,26:64:99:678,0,1200
5    54439466    rs1021580    G    A    483.71    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.465;DB;DP=47;Dels=0.0;FS=2.781;HRun=0;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=-0.214;QD=10.29;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=R100C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54439341_54439471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC20B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331730    GT:AD:DP:GQ:PL    0/1:28,19:47:99:514,0,912
5    54456734    rs2270910    C    G    261.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.873;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.391;QD=12.47;ReadPosRankSum=-0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505096    GT:AD:DP:GQ:PL    0/1:9,12:21:99:292,0,323
5    54459961    rs381852    A    G    938.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=29.34;SNPEFF_AMINO_ACID_CHANGE=K131R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54459883_54460582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000515370    GT:AD:DP:GQ:PL    1/1:0,32:32:72.24:972,72,0
5    54460166    rs10059517    T    C    166.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505096    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:199,18,0
5    54466544    rs10061133    A    G    478.77    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.167;DB;DP=41;Dels=0.0;FS=2.2;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=1.17;QD=11.68;ReadPosRankSum=-1.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296734    GT:AD:DP:GQ:PL    0/1:22,19:41:99:509,0,642
5    54557438    rs400437    T    C    714.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7485;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251636    GT:AD:DP:GQ:PL    1/1:0,19:20:57.18:748,57,0
5    54572163    rs3761764    T    C    962.89    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=76;Dels=0.0;FS=1.941;HRun=0;HaplotypeScore=0.7887;MQ=57.59;MQ0=0;MQRankSum=0.887;QD=12.67;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=K786;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54572094_54572234;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251636    GT:AD:DP:GQ:PL    0/1:41,35:76:99:993,0,1248
5    54593016    rs2305676    T    A    141.61    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=20.23;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251636    GT:AD:DP:GQ:PL    0/1:2,5:7:61.92:172,0,62
5    54594285    rs10940461    G    A    94.54    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=8.59;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251636    GT:AD:DP:GQ:PL    0/1:7,4:11:99:125,0,241
5    54603822    rs2290595    T    C    430.36    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.718;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.02;MQ0=0;MQRankSum=0.333;QD=8.28;ReadPosRankSum=0.313;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251636    GT:AD:DP:GQ:PL    0/1:32,20:52:99:460,0,1044
5    54635738    rs13436164    A    G    74.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-1.231;QD=14.86;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:2,3:5:66.72:104,0,67
5    54635810    rs13436420    G    T    192.51    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.049;DB;DP=17;Dels=0.0;FS=3.14;HRun=2;HaplotypeScore=1.9913;MQ=59.88;MQ0=0;MQRankSum=-0.439;QD=11.32;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:10,7:17:99:223,0,317
5    54635826    rs112218750    T    TC    470.94    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=78.4086;IndelType=I;MQ=60.8;MQ0=0;MQRankSum=1.135;QD=21.41;ReadPosRankSum=-2.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:9,13:22:99:510,0,285
5    54639385    rs145722584    T    TA    275.59    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.711;DB;DP=26;FS=0.0;HRun=8;HaplotypeScore=62.2129;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=0.81;QD=10.6;ReadPosRankSum=-1.514;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502953    GT:AD:DP:GQ:PL    0/1:16,10:26:99:315,0,212
5    54640496    rs2305678    A    G    173.14    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.488;QD=10.82;ReadPosRankSum=-1.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502953    GT:AD:DP:GQ:PL    0/1:10,6:16:99:203,0,366
5    54643227    rs10043447    A    G    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502953    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
5    54645411    rs2061242    G    A    693.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.147;DB;DP=62;Dels=0.0;FS=2.139;HRun=4;HaplotypeScore=0.7887;MQ=59.7;MQ0=0;MQRankSum=0.368;QD=11.19;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=K316;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54645401_54645480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545714    GT:AD:DP:GQ:PL    0/1:31,31:62:99:724,0,977
5    54646894    rs9885400    A    G    114.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=12.76;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504997    GT:AD:DP:GQ:PL    0/1:3,6:9:99:145,0,104
5    54648918    rs9292089    T    C    529.61    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.987;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.724;QD=18.26;ReadPosRankSum=-0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:13,16:29:99:560,0,451
5    54654202    rs2305679    C    G    77.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=1.231;QD=15.5;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:2,3:5:67.19:107,0,67
5    54674296    rs10471413    A    G    674.93    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.486;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.18;MQ0=0;MQRankSum=-0.049;QD=13.23;ReadPosRankSum=-0.495;SNPEFF_AMINO_ACID_CHANGE=Q554;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_54674142_54674314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545714    GT:AD:DP:GQ:PL    0/1:27,24:51:99:705,0,769
5    54683977    rs16884123    T    C    312.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=0.416;QD=15.64;ReadPosRankSum=1.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:10,10:20:99:343,0,346
5    54684095    rs147426320    A    G    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:2,2:4:70.42:70,0,71
5    54693374    rs230802    G    A    530.06    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.661;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=16.56;ReadPosRankSum=-1.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:14,18:32:99:560,0,405
5    54693402    rs230801    G    A    237.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.912;QD=11.3;ReadPosRankSum=-0.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:12,9:21:99:267,0,367
5    54701573    rs230783    G    T    33.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.63;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:3,2:5:63.16:63,0,113
5    54706325    rs148381666    T    TTTTAAA    1695.94    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.925;DB;DP=41;FS=13.202;HRun=0;HaplotypeScore=192.8834;IndelType=I;MQ=50.78;MQ0=0;MQRankSum=-3.847;QD=41.36;ReadPosRankSum=-1.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:26,11:41:99:1735,0,1316
5    54709943    rs230766    G    A    308.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.94;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=53.36;MQ0=0;MQRankSum=2.364;QD=14.0;ReadPosRankSum=0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:11,11:22:99:338,0,285
5    54718618    rs230753    G    C    119.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.91;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264775    GT:AD:DP:GQ:PL    0/1:2,4:6:58.23:149,0,58
5    54721499    rs230751    C    A    143.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.98;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:2,6:8:51.20:174,0,51
5    54721619    rs3217330    A    AT    683.45    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=5.243;DB;DP=51;FS=0.0;HRun=10;HaplotypeScore=247.8105;IndelType=I;MQ=59.74;MQ0=0;MQRankSum=1.093;QD=13.4;ReadPosRankSum=-1.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:24,27:51:99:722,0,330
5    54721642    rs230750    A    C    789.75    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=68;Dels=0.0;FS=3.044;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=1.285;QD=11.61;ReadPosRankSum=1.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230640    GT:AD:DP:GQ:PL    0/1:35,33:68:99:820,0,1051
5    54737538    rs2278258    T    C    329.68    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.489;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=19.39;ReadPosRankSum=1.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509667    GT:AD:DP:GQ:PL    0/1:7,10:17:99:360,0,228
5    54737791    rs2278257    G    C    595.49    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=34;Dels=0.0;FS=3.081;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.674;QD=17.51;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264775    GT:AD:DP:GQ:PL    0/1:14,20:34:99:625,0,479
5    54771380    rs6870449    A    G    143.88    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.309;QD=11.99;ReadPosRankSum=1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264775    GT:AD:DP:GQ:PL    0/1:7,5:12:99:174,0,247
5    54923901    .    T    C    148.93    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.82;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC38A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318672    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:179,0,23
5    54952688    rs11397177    C    CT    213.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=26.9501;IndelType=I;MQ=58.2;MQ0=0;QD=16.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC38A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318672    GT:AD:DP:GQ:PL    1/1:5,8:12:24.06:256,24,0
5    55034756    rs113491933    A    AT    285.69    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.899;DB;DP=70;FS=2.958;HRun=13;HaplotypeScore=236.6886;IndelType=I;MQ=58.27;MQ0=0;MQRankSum=-0.963;QD=4.08;ReadPosRankSum=-0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353507    GT:AD:DP:GQ:PL    0/1:47,18:70:99:325,0,537
5    55035005    rs3761774    A    T    332.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353507    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
5    55041943    rs66846694    G    A    97.86    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.768;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.051;QD=6.99;ReadPosRankSum=1.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353507    GT:AD:DP:GQ:PL    0/1:10,4:14:99:128,0,268
5    55058992    rs3761776    C    A    634.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353507    GT:AD:DP:GQ:PL    1/1:0,22:22:54.14:668,54,0
5    55063843    rs60640325    T    C    388.13    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.221;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.87;MQ0=0;MQRankSum=-1.051;QD=10.49;ReadPosRankSum=-1.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506848    GT:AD:DP:GQ:PL    0/1:20,17:37:99:418,0,706
5    55077964    rs62361901    C    T    75.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-0.727;QD=18.9;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511491    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:106,0,27
5    55080998    rs12659227    T    C    423.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.283;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.383;QD=11.77;ReadPosRankSum=0.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509312    GT:AD:DP:GQ:PL    0/1:20,16:36:99:454,0,718
5    55081694    rs2305123    A    G    561.72    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=58.89;MQ0=0;MQRankSum=0.355;QD=12.48;ReadPosRankSum=0.047;SNPEFF_AMINO_ACID_CHANGE=I138V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_55081557_55081699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511853    GT:AD:DP:GQ:PL    0/1:26,19:45:99:592,0,773
5    55082474    rs957459    C    T    2522.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=C182;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_55082346_55082498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511853    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2556,190,0
5    55083458    rs1812881    T    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353507    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
5    55083554    rs77661280    C    G    62.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.072;QD=6.21;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353507    GT:AD:DP:GQ:PL    0/1:6,4:10:92.14:92,0,225
5    55086497    rs61748223    T    G    838.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DB;DP=64;Dels=0.0;FS=0.971;HRun=0;HaplotypeScore=2.7384;MQ=59.64;MQ0=0;MQRankSum=1.366;QD=13.11;ReadPosRankSum=-0.859;SNPEFF_AMINO_ACID_CHANGE=T273;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_55086404_55086533;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511853    GT:AD:DP:GQ:PL    0/1:32,32:64:99:869,0,1082
5    55094046    rs3789195    T    C    39.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353507    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
5    55149235    rs10940486    G    T    403.17    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=4.215;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9452;MQ=60.0;MQ0=0;MQRankSum=-0.19;QD=16.13;ReadPosRankSum=0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359040    GT:AD:DP:GQ:PL    0/1:13,12:25:99:433,0,392
5    55149407    rs10940487    T    C    1524.81    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.194;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0633;MQ=59.78;MQ0=0;MQRankSum=-1.542;QD=14.66;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:48,56:104:99:1555,0,1378
5    55164539    rs57216875    T    C    343.32    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=29;Dels=0.0;FS=3.032;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.376;QD=11.84;ReadPosRankSum=1.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:17,12:29:99:373,0,575
5    55164770    rs77468158    G    T    772.09    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.987;DB;DP=55;Dels=0.0;FS=2.432;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=0.526;QD=14.04;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:29,26:55:99:802,0,742
5    55168132    rs59086632    A    G    436.02    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.594;DB;DP=47;Dels=0.0;FS=3.114;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.075;QD=9.28;ReadPosRankSum=-1.044;SNPEFF_AMINO_ACID_CHANGE=N103D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_55168098_55168279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359040    GT:AD:DP:GQ:PL    0/1:27,20:47:99:466,0,907
5    55168328    rs71602921    C    CCTT    628.87    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=21;FS=3.468;HRun=0;HaplotypeScore=68.5803;IndelType=I;MQ=54.82;MQ0=0;MQRankSum=-1.368;QD=29.95;ReadPosRankSum=0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:10,11:21:99:668,0,374
5    55179052    rs10940491    A    T    389.98    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.701;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=11.47;ReadPosRankSum=0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:21,13:34:99:420,0,729
5    55185987    rs76126030    G    A    185.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=21;Dels=0.0;FS=2.409;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.112;QD=8.84;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:14,7:21:99:216,0,435
5    55192381    rs147583777    C    T    52.02    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.43;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:3,4:7:82.01:82,0,102
5    55201868    rs114661754    A    T    365.67    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.495;QD=16.62;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:10,12:22:99:396,0,349
5    55202233    rs80176593    A    G    51.26    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=7.32;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297015    GT:AD:DP:GQ:PL    0/1:4,3:7:81.25:81,0,143
5    55212379    rs161700    A    G    354.52    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.761;QD=14.18;ReadPosRankSum=0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354961    GT:AD:DP:GQ:PL    0/1:13,12:25:99:385,0,405
5    55213028    rs75960820    C    T    740.40    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=2.72;DB;DP=37;Dels=0.0;FS=1.926;HRun=0;HaplotypeScore=1.8773;MQ=60.0;MQ0=0;MQRankSum=0.968;QD=20.01;ReadPosRankSum=-0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490985    GT:AD:DP:GQ:PL    0/1:11,26:37:99:770,0,198
5    55237673    rs11574781    G    A    382.13    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=30;Dels=0.0;FS=2.022;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=12.74;ReadPosRankSum=-0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6ST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336909    GT:AD:DP:GQ:PL    0/1:17,13:30:99:412,0,586
5    55246001    rs4865999    A    G    2152.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.57;DB;DP=81;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=59.72;MQ0=0;MQRankSum=-0.539;QD=26.57;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6ST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542298    GT:AD:DP:GQ:PL    1/1:2,79:81:99:2185,154,0
5    55398269    rs318818    G    C    413.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341048    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:447,36,0
5    55406952    rs321775    T    C    1399.18    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.162;DB;DP=83;Dels=0.0;FS=0.861;HRun=0;HaplotypeScore=0.5784;MQ=59.72;MQ0=0;MQRankSum=-0.124;QD=16.86;ReadPosRankSum=0.549;SNPEFF_AMINO_ACID_CHANGE=P253;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_55406945_55407609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434982    GT:AD:DP:GQ:PL    0/1:35,48:83:99:1429,0,995
5    55407542    rs321776    C    T    1399.30    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.788;DB;DP=82;Dels=0.0;FS=5.978;HRun=0;HaplotypeScore=0.8667;MQ=59.72;MQ0=0;MQRankSum=-0.186;QD=17.06;ReadPosRankSum=-0.455;SNPEFF_AMINO_ACID_CHANGE=V302M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_55406945_55407609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504958    GT:AD:DP:GQ:PL    0/1:39,43:82:99:1429,0,1066
5    55412236    rs318804    C    T    84.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341048    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
5    55412347    rs318805    A    G    751.89    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.456;DB;DP=48;Dels=0.0;FS=9.617;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=1.651;QD=15.66;ReadPosRankSum=0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341048    GT:AD:DP:GQ:PL    0/1:23,25:48:99:782,0,791
5    55422681    rs321768    C    T    742.12    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.439;DB;DP=64;Dels=0.0;FS=3.467;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.503;QD=11.6;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341048    GT:AD:DP:GQ:PL    0/1:37,27:64:99:772,0,1300
5    55455645    rs13186299    G    C    794.81    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=85;Dels=0.0;FS=3.029;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.06;QD=9.35;ReadPosRankSum=-0.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519586    GT:AD:DP:GQ:PL    0/1:53,32:85:99:825,0,1716
5    55472289    rs160936    T    C    104.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341048    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:137,12,0
5    55479662    rs159574    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341048    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    55807370    rs464605    C    T    71.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=17.99;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022431.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438651    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:102,0,30
5    55809465    rs173964    A    G    125.92    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.453;QD=7.87;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022431.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438651    GT:AD:DP:GQ:PL    0/1:11,5:16:99:156,0,398
5    55831021    rs13178412    A    G    104.25    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=11;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=9.48;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=Y23H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_55830957_55831055;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022431.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438651    GT:AD:DP:GQ:PL    0/1:6,5:11:99:134,0,107
5    56152416    rs832567    C    A    679.52    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.168;DB;DP=39;Dels=0.0;FS=2.504;HRun=0;HaplotypeScore=1.7256;MQ=59.52;MQ0=0;MQRankSum=0.754;QD=17.42;ReadPosRankSum=0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:16,22:39:99:710,0,488
5    56161787    rs832575    G    A    2097.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=T428;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_56161656_56161804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2130,157,0
5    56177369    rs114561358    T    C    284.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.554;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4517;MQ=59.36;MQ0=0;MQRankSum=1.191;QD=7.9;ReadPosRankSum=-0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:24,12:36:99:314,0,819
5    56177443    rs702689    G    A    1294.05    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.621;DB;DP=74;Dels=0.0;FS=3.26;HRun=1;HaplotypeScore=0.9998;MQ=59.69;MQ0=0;MQRankSum=-1.381;QD=17.49;ReadPosRankSum=-0.185;SNPEFF_AMINO_ACID_CHANGE=D806N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_56177397_56178693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:33,41:74:99:1324,0,1068
5    56177743    rs832582    G    A    844.92    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.984;DB;DP=63;Dels=0.0;FS=4.987;HRun=1;HaplotypeScore=0.5784;MQ=59.27;MQ0=0;MQRankSum=0.227;QD=13.41;ReadPosRankSum=0.97;SNPEFF_AMINO_ACID_CHANGE=V906I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_56177397_56178693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:30,33:63:99:875,0,953
5    56177848    rs34869245    TCAA    T    767.67    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=4.907;DB;DP=55;FS=2.817;HRun=0;HaplotypeScore=219.3521;IndelType=D;MQ=58.73;MQ0=0;MQRankSum=-0.639;QD=13.96;ReadPosRankSum=0.421;SNPEFF_AMINO_ACID_CHANGE=ST941S;SNPEFF_CODON_CHANGE=tcaaca/tca;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_5_56177397_56178693;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:34,21:55:99:807,0,957
5    56178217    rs832583    A    C    606.98    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.039;DB;DP=55;Dels=0.0;FS=4.213;HRun=0;HaplotypeScore=0.8321;MQ=59.58;MQ0=0;MQRankSum=-0.564;QD=11.04;ReadPosRankSum=0.21;SNPEFF_AMINO_ACID_CHANGE=R1064;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_56177397_56178693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:28,27:55:99:637,0,908
5    56179212    rs832584    C    T    113.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.16;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:3,4:7:99:143,0,102
5    56183542    rs832549    C    T    115.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.28;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:2,4:6:65.23:146,0,65
5    56183941    rs832547    C    G    98.06    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=8.17;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399503    GT:AD:DP:GQ:PL    0/1:8,4:12:99:128,0,297
5    56205357    rs185220    A    G    157.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475908    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
5    56205643    rs252924    A    G    355.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285947    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:389,30,0
5    56205662    rs252923    T    G    184.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=20.5;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285947    GT:AD:DP:GQ:PL    0/1:3,6:9:92:214,0,92
5    56207123    rs2257505    T    A    1639.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=36.44;SNPEFF_AMINO_ACID_CHANGE=S76T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_56206996_56207363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285947    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1673,126,0
5    56209590    rs74270761    C    CT    100.80    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.858;DB;DP=27;FS=0.0;HRun=16;HaplotypeScore=255.1933;IndelType=I;MQ=48.72;MQ0=0;MQRankSum=1.47;QD=3.73;ReadPosRankSum=-0.804;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423328    GT:AD:DP:GQ:PL    0/1:12,9:27:99:140,0,125
5    56209735    rs40497    A    G    1311.13    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.066;DB;DP=108;Dels=0.0;FS=1.622;HRun=0;HaplotypeScore=1.7337;MQ=57.87;MQ0=0;MQRankSum=0.485;QD=12.14;ReadPosRankSum=0.159;SNPEFF_AMINO_ACID_CHANGE=K209E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_56209701_56209816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285947    GT:AD:DP:GQ:PL    0/1:58,50:108:99:1341,0,1873
5    56212595    rs832536    C    T    380.88    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.131;DB;DP=31;Dels=0.0;FS=2.222;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.206;QD=12.29;ReadPosRankSum=-0.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472636    GT:AD:DP:GQ:PL    0/1:16,15:31:99:411,0,587
5    56219698    rs74865790    T    C    875.79    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.071;DB;DP=68;Dels=0.0;FS=9.143;HRun=0;HaplotypeScore=0.7887;MQ=59.66;MQ0=0;MQRankSum=-0.874;QD=12.88;ReadPosRankSum=1.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541720    GT:AD:DP:GQ:PL    0/1:37,31:68:99:906,0,1066
5    56224485    rs10684065    T    TTGGC    359.31    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=38.4511;IndelType=I;MQ=53.36;MQ0=0;MQRankSum=-1.532;QD=32.66;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541720    GT:AD:DP:GQ:PL    0/1:6,5:11:99:398,0,344
5    56224714    rs252893    T    C    504.85    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.176;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.206;QD=13.29;ReadPosRankSum=-0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541720    GT:AD:DP:GQ:PL    0/1:21,17:38:99:535,0,689
5    56226410    rs252890    T    C    691.90    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=4.013;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.843;QD=16.47;ReadPosRankSum=-1.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381199    GT:AD:DP:GQ:PL    0/1:19,23:42:99:722,0,631
5    56229288    rs832529    C    T    284.30    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=12.36;ReadPosRankSum=-0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336942    GT:AD:DP:GQ:PL    0/1:11,12:23:99:314,0,347
5    56233541    rs2591968    G    A    414.61    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=11.52;ReadPosRankSum=0.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480115    GT:AD:DP:GQ:PL    0/1:19,17:36:99:445,0,622
5    56233551    rs2591967    C    G    430.65    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.868;DB;DP=32;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=13.46;ReadPosRankSum=2.374;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480115    GT:AD:DP:GQ:PL    0/1:18,14:32:99:461,0,583
5    56242774    rs2034244    T    C    845.56    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.679;DB;DP=59;Dels=0.0;FS=9.626;HRun=1;HaplotypeScore=1.8519;MQ=59.61;MQ0=0;MQRankSum=0.782;QD=14.33;ReadPosRankSum=-0.691;SNPEFF_AMINO_ACID_CHANGE=S26;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_56242753_56242898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336942    GT:AD:DP:GQ:PL    0/1:28,31:59:99:876,0,862
5    56246610    rs2662040    A    G    96.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.03;ReadPosRankSum=-1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336942    GT:AD:DP:GQ:PL    0/1:4,4:8:88.61:126,0,89
5    56256596    rs7725377    G    A    893.96    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.754;DB;DP=73;Dels=0.0;FS=4.76;HRun=1;HaplotypeScore=0.9832;MQ=59.68;MQ0=0;MQRankSum=0.098;QD=12.25;ReadPosRankSum=-0.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440000    GT:AD:DP:GQ:PL    0/1:38,35:73:99:924,0,1180
5    56526565    rs1544737    G    T    1702.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264779    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1735,135,0
5    56527224    rs1862172    T    C    311    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264779    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:344,27,0
5    57750267    rs32613    A    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
5    57750350    rs15009    C    G    240.93    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.381;QD=18.53;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442330    GT:AD:DP:GQ:PL    0/1:5,8:13:99:271,0,153
5    57751443    rs1042994    A    G    381.09    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.121;DB;DP=27;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.946;QD=14.11;ReadPosRankSum=-1.432;SNPEFF_AMINO_ACID_CHANGE=F516;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_57751366_57751606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274289    GT:AD:DP:GQ:PL    0/1:13,14:27:99:411,0,455
5    57752504    rs12522386    T    C    221.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.427;QD=11.07;ReadPosRankSum=-1.582;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503115    GT:AD:DP:GQ:PL    0/1:12,8:20:99:251,0,429
5    57752526    rs12513877    G    A    87.39    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.457;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.196;QD=5.83;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503115    GT:AD:DP:GQ:PL    0/1:11,4:15:99:117,0,412
5    57752563    rs12513905    G    C    142.15    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.92;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503115    GT:AD:DP:GQ:PL    0/1:6,5:11:99:172,0,212
5    57753116    rs17710502    C    T    278.17    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.143;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=12.09;ReadPosRankSum=-0.758;SNPEFF_AMINO_ACID_CHANGE=P286;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_57753020_57753206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442330    GT:AD:DP:GQ:PL    0/1:13,10:23:99:308,0,384
5    57753149    rs17767072    A    G    364.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.923;QD=14.02;ReadPosRankSum=-0.051;SNPEFF_AMINO_ACID_CHANGE=Y275;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_57753020_57753206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442330    GT:AD:DP:GQ:PL    0/1:13,13:26:99:394,0,428
5    57753251    rs2220785    T    A    345.40    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=21;Dels=0.0;FS=7.025;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.232;QD=16.45;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504196    GT:AD:DP:GQ:PL    0/1:10,11:21:99:375,0,340
5    57753437    rs2201293    G    A    242.88    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=20;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.152;QD=12.14;ReadPosRankSum=0.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504196    GT:AD:DP:GQ:PL    0/1:11,9:20:99:273,0,401
5    57753456    rs702723    C    T    485.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504196    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:519,39,0
5    57754004    rs697135    C    T    1485.32    SnpCluster    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7117;MQ=59.81;MQ0=0;MQRankSum=0.823;QD=12.17;ReadPosRankSum=-1.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504196    GT:AD:DP:GQ:PL    0/1:64,58:122:99:1515,0,2115
5    57754005    rs1848510    G    A    2071.79    SnpCluster    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.244;DB;DP=118;Dels=0.0;FS=0.86;HRun=1;HaplotypeScore=3.7117;MQ=59.61;MQ0=0;MQRankSum=0.417;QD=17.56;ReadPosRankSum=0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504196    GT:AD:DP:GQ:PL    0/1:52,65:118:99:2102,0,1508
5    57754007    rs59135347    T    G    1416.58    SnpCluster    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=5.768;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1333;MQ=59.41;MQ0=0;MQRankSum=-1.029;QD=12.0;ReadPosRankSum=-1.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504196    GT:AD:DP:GQ:PL    0/1:66,51:118:99:1447,0,2112
5    57754040    rs17710615    G    A    804.75    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.303;DB;DP=70;Dels=0.0;FS=5.108;HRun=0;HaplotypeScore=3.4174;MQ=59.01;MQ0=0;MQRankSum=-0.131;QD=11.5;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504196    GT:AD:DP:GQ:PL    0/1:41,29:70:99:835,0,1363
5    57754132    rs697134    G    C    1324.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=37.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504196    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1357,102,0
5    57754808    rs697133    G    A    2614.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274289    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2648,196,0
5    57755923    rs33921924    C    T    81.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.4;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442330    GT:AD:DP:GQ:PL    0/1:1,3:4:22.31:112,0,22
5    57790337    rs7704785    T    C    544.13    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.483;DB;DP=29;Dels=0.0;FS=15.529;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=18.76;ReadPosRankSum=-0.775;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511178    GT:AD:DP:GQ:PL    0/1:12,17:29:99:574,0,398
5    57878863    rs1876691    C    A    121.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAB3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513316    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
5    57913379    rs2279980    A    G    1276.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=94;Dels=0.0;FS=8.514;HRun=2;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.219;QD=13.58;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAB3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282878    GT:AD:DP:GQ:PL    0/1:47,47:94:99:1307,0,1461
5    58120753    rs11384049    G    GT    226.40    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=13;FS=0.0;HRun=10;HaplotypeScore=91.2779;IndelType=I;MQ=52.45;MQ0=0;MQRankSum=-0.423;QD=17.42;ReadPosRankSum=-0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAB3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282878    GT:AD:DP:GQ:PL    0/1:3,9:13:13.96:265,0,14
5    58271713    rs112200987    T    TA    241.67    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.586;DB;DP=33;FS=0.0;HRun=11;HaplotypeScore=102.711;IndelType=I;MQ=60.65;MQ0=0;MQRankSum=0.366;QD=7.32;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317118    GT:AD:DP:GQ:PL    0/1:21,12:33:99:281,0,261
5    58273448    rs17719378    T    C    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317118    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
5    58284283    rs3805556    G    A    79.25    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405053    GT:AD:DP:GQ:PL    0/1:4,5:9:99:109,0,143
5    58285813    rs11373971    T    TA    328.44    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.698;DB;DP=48;FS=3.979;HRun=11;HaplotypeScore=125.3633;IndelType=I;MQ=59.52;MQ0=0;MQRankSum=0.787;QD=6.84;ReadPosRankSum=0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405053    GT:AD:DP:GQ:PL    0/1:33,15:48:99:367,0,437
5    58286625    rs1553114    C    T    1239.18    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.13;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.58;QD=16.75;ReadPosRankSum=-0.941;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405053    GT:AD:DP:GQ:PL    0/1:30,44:74:99:1269,0,909
5    58286836    rs1973451    A    G    102.19    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=9.29;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405053    GT:AD:DP:GQ:PL    0/1:7,4:11:99:132,0,235
5    58287553    rs3840337    AAAC    A    275.55    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=81.398;IndelType=D;MQ=54.6;MQ0=0;MQRankSum=-0.048;QD=16.21;ReadPosRankSum=-0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405053    GT:AD:DP:GQ:PL    0/1:9,8:17:99:315,0,499
5    58288004    rs3805554    G    A    113.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405053    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:146,12,0
5    58289334    rs7724713    A    G    760.75    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=50;Dels=0.0;FS=1.747;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.651;QD=15.22;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317118    GT:AD:DP:GQ:PL    0/1:24,26:50:99:791,0,749
5    58289517    rs1463816    A    C    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317118    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
5    58295380    rs35776313    G    GTA    705.51    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.844;DB;DP=56;FS=5.701;HRun=0;HaplotypeScore=158.7422;IndelType=I;MQ=59.33;MQ0=0;MQRankSum=-0.471;QD=12.6;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    0/1:37,17:56:99:745,0,571
5    58297881    rs2968014    A    G    2330.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.124;DB;DP=164;Dels=0.0;FS=2.76;HRun=0;HaplotypeScore=4.1366;MQ=59.75;MQ0=0;MQRankSum=0.241;QD=14.21;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    0/1:82,82:164:99:2360,0,2549
5    58475985    rs9292194    G    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    58476117    rs9292195    T    C    664.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:698,51,0
5    58481289    rs3815764    C    T    166.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
5    58489218    rs1445950    G    A    77.10    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.698;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.484;QD=3.86;ReadPosRankSum=-0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    0/1:15,5:20:99:107,0,552
5    58489384    rs27175    G    A    2389.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2423,181,0
5    58511501    rs6450512    G    A    285.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.011;QD=9.51;ReadPosRankSum=0.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    0/1:18,12:30:99:315,0,627
5    58513701    rs1867725    A    G    509.18    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.296;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=15.43;ReadPosRankSum=0.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    0/1:15,18:33:99:539,0,529
5    58882331    rs11402131    C    CA    67.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=18;FS=0.0;HRun=16;HaplotypeScore=253.6752;IndelType=I;MQ=48.72;MQ0=0;MQRankSum=-0.742;QD=3.74;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340635    GT:AD:DP:GQ:PL    1/1:11,6:18:3.94:107,4,0
5    59284697    rs1983174    T    C    596.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502484    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:630,48,0
5    59783742    rs3214934    TA    T    688.56    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=3.653;DB;DP=64;FS=1.467;HRun=10;HaplotypeScore=175.8244;IndelType=D;MQ=60.22;MQ0=0;MQRankSum=-0.08;QD=10.76;ReadPosRankSum=0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502484    GT:AD:DP:GQ:PL    0/1:29,35:64:99:728,0,676
5    59894838    rs58987696    T    TA    177.19    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=19;FS=0.0;HRun=11;HaplotypeScore=56.4807;IndelType=I;MQ=58.12;MQ0=0;MQRankSum=0.041;QD=9.33;ReadPosRankSum=0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265036    GT:AD:DP:GQ:PL    0/1:11,8:19:99:216,0,174
5    59899413    rs11740327    G    A    497.18    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=42;Dels=0.0;FS=1.435;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.264;QD=11.84;ReadPosRankSum=0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509006    GT:AD:DP:GQ:PL    0/1:20,22:42:99:527,0,649
5    59940502    rs6877561    A    T    325.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=15.51;ReadPosRankSum=0.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505017    GT:AD:DP:GQ:PL    0/1:9,12:21:99:356,0,284
5    60053220    rs7715147    C    A    177.96    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.18;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425382    GT:AD:DP:GQ:PL    0/1:5,6:11:99:208,0,175
5    60063576    rs1460958    G    A    294.65    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=3.232;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.419;QD=10.91;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425382    GT:AD:DP:GQ:PL    0/1:16,11:27:99:325,0,459
5    60083275    rs10072745    C    A    242.56    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.142;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.594;QD=9.33;ReadPosRankSum=1.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425382    GT:AD:DP:GQ:PL    0/1:16,9:26:99:273,0,579
5    60170337    rs3117    A    G    125.99    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=18.0;ReadPosRankSum=-1.495;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462279    GT:AD:DP:GQ:PL    0/1:2,5:7:63.40:156,0,63
5    60186618    rs2306350    C    T    185.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265038    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:219,18,0
5    60186975    rs2306351    C    A    481.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265038    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:514,39,0
5    60199363    rs4647102    C    T    213.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.792;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.33;MQ0=0;MQRankSum=0.91;QD=15.22;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265038    GT:AD:DP:GQ:PL    0/1:7,7:14:99:243,0,227
5    60200665    rs4647100    A    G    1713.89    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.387;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=59.66;MQ0=0;MQRankSum=-0.572;QD=13.82;ReadPosRankSum=0.874;SNPEFF_AMINO_ACID_CHANGE=Y144;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_60200619_60200700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536596    GT:AD:DP:GQ:PL    0/1:65,59:124:99:1744,0,1849
5    60217651    rs976080    A    C    35.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265038    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
5    60224914    rs158570    C    T    253.80    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=14.93;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265038    GT:AD:DP:GQ:PL    0/1:9,8:17:99:284,0,254
5    60240986    rs158922    A    G    66.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.44;ReadPosRankSum=1.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265038    GT:AD:DP:GQ:PL    0/1:4,3:7:96.09:96,0,126
5    60241142    rs158921    G    A    185.98    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.116;DB;DP=21;Dels=0.0;FS=4.415;HRun=2;HaplotypeScore=0.0;MQ=52.78;MQ0=1;MQRankSum=0.039;QD=8.86;ReadPosRankSum=1.427;SNPEFF_AMINO_ACID_CHANGE=K20;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_60240956_60241209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFAF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296597    GT:AD:DP:GQ:PL    0/1:13,8:21:99:216,0,369
5    60369083    rs10471502    A    G    1260.76    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.46;MQ0=0;MQRankSum=0.281;QD=14.66;ReadPosRankSum=-2.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296597    GT:AD:DP:GQ:PL    0/1:44,42:86:99:1291,0,1441
5    60983027    rs13188780    G    C    630.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313303    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:663,51,0
5    60999501    rs115198402    T    C    35.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313303    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:66,0,32
5    61642937    rs3213940    T    C    513.42    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3204;MQ=59.42;MQ0=0;MQRankSum=-0.547;QD=12.84;ReadPosRankSum=0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    0/1:23,17:40:99:543,0,712
5    61643769    rs3776614    G    A    478.34    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=3.669;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.1;QD=12.27;ReadPosRankSum=0.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    0/1:23,16:39:99:508,0,806
5    61643816    rs3776615    G    A    2830.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.6651;MQ=59.12;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2864,229,0
5    61645870    rs35699711    A    G    1194.03    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.472;DB;DP=83;Dels=0.0;FS=3.17;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-1.284;QD=14.39;ReadPosRankSum=-2.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    0/1:35,48:83:99:1224,0,1095
5    61648332    rs71305053    T    TG    127.92    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=11;FS=0.0;HRun=5;HaplotypeScore=30.9917;IndelType=I;MQ=58.4;MQ0=0;MQRankSum=0.103;QD=11.63;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512541    GT:AD:DP:GQ:PL    0/1:6,5:11:99:167,0,130
5    61648738    rs10939939    T    G    100.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=14.38;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512541    GT:AD:DP:GQ:PL    0/1:3,4:7:99:131,0,106
5    61649347    rs6886044    T    A    208.14    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=17.34;ReadPosRankSum=1.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504883    GT:AD:DP:GQ:PL    0/1:5,7:12:99:238,0,161
5    61650843    rs2289883    G    A    441.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504883    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:474,36,0
5    61651248    rs959899    T    C    310.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504883    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:344,30,0
5    61653414    rs34220654    A    G    179    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=11.93;ReadPosRankSum=-0.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504883    GT:AD:DP:GQ:PL    0/1:8,7:15:99:209,0,277
5    61653757    rs35008    C    T    118.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.72;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504883    GT:AD:DP:GQ:PL    0/1:2,4:6:61.15:148,0,61
5    61654187    rs35009    G    C    620.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.5;DB;DP=45;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=1.5783;MQ=59.49;MQ0=0;MQRankSum=-0.552;QD=13.8;ReadPosRankSum=-1.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    0/1:22,22:45:99:651,0,792
5    61657228    rs247265    T    C    2793.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514082    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2827,217,0
5    61657377    rs247266    A    T    2579.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=34.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514082    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2613,199,0
5    61659339    rs166008    C    T    149.71    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.762;QD=16.63;ReadPosRankSum=-1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509624    GT:AD:DP:GQ:PL    0/1:2,7:9:52.72:180,0,53
5    61662457    rs247226    G    A    79.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509624    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
5    61668150    rs16875037    A    C    107.53    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.761;QD=4.14;ReadPosRankSum=-1.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    0/1:20,6:26:99:138,0,742
5    61673670    rs464058    A    G    175.34    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.393;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=-0.938;QD=6.74;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    0/1:18,8:26:99:205,0,627
5    61676902    rs247253    G    T    4038.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.7;DB;DP=111;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.2228;MQ=59.58;MQ0=0;MQRankSum=1.065;QD=36.39;ReadPosRankSum=-1.605;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    1/1:1,109:111:99:4039,274,0
5    61676911    rs247254    T    G    4126.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.877;DB;DP=119;Dels=0.0;FS=3.984;HRun=1;HaplotypeScore=1.4942;MQ=59.42;MQ0=0;MQRankSum=0.159;QD=34.67;ReadPosRankSum=-1.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381103    GT:AD:DP:GQ:PL    1/1:2,116:119:99:4126,268,0
5    61684882    rs35130331    GA    G    357.58    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=3.295;DB;DP=36;FS=0.0;HRun=6;HaplotypeScore=97.0771;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.153;QD=9.93;ReadPosRankSum=2.728;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506390    GT:AD:DP:GQ:PL    0/1:21,15:36:99:397,0,466
5    61686647    rs2257389    C    T    491    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.871;QD=16.37;ReadPosRankSum=-0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506390    GT:AD:DP:GQ:PL    0/1:15,15:30:99:521,0,538
5    61688892    rs35014    G    A    211.72    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=13.23;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199320    GT:AD:DP:GQ:PL    0/1:9,7:16:99:242,0,323
5    61689716    rs2272291    T    C    198.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4344;MQ=60.0;MQ0=0;MQRankSum=0.998;QD=12.38;ReadPosRankSum=-2.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199320    GT:AD:DP:GQ:PL    0/1:8,8:16:99:228,0,289
5    61689740    rs76388308    CT    C    233.56    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=25;FS=0.0;HRun=8;HaplotypeScore=84.4803;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.278;QD=9.34;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199320    GT:AD:DP:GQ:PL    0/1:13,12:25:99:273,0,386
5    61694379    rs247264    T    C    3809.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=33.12;SNPEFF_AMINO_ACID_CHANGE=S135;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_61694338_61694387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIMT1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000199320    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3809,310,0
5    61697859    rs27089    C    T    1455.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.025;DB;DP=49;Dels=0.0;FS=4.114;HRun=3;HaplotypeScore=0.9998;MQ=59.53;MQ0=0;MQRankSum=1.591;QD=29.71;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199320    GT:AD:DP:GQ:PL    1/1:1,48:49:79.74:1489,80,0
5    61699231    rs27693    A    C    639.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIMT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199320    GT:AD:DP:GQ:PL    1/1:0,20:20:54.15:673,54,0
5    61733348    rs153857    G    A    188.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=18.85;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325324    GT:AD:DP:GQ:PL    0/1:4,6:10:98.02:218,0,98
5    61745737    rs34139913    CT    C    425.30    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=4.18;DB;DP=74;FS=3.974;HRun=12;HaplotypeScore=202.618;IndelType=D;MQ=59.73;MQ0=0;MQRankSum=-0.021;QD=5.75;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325324    GT:AD:DP:GQ:PL    0/1:44,30:74:99:464,0,841
5    61747500    rs2441115    G    A    35.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=5.06;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325324    GT:AD:DP:GQ:PL    0/1:5,2:7:65.41:65,0,136
5    61772591    rs26620    T    C    496.69    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.437;DB;DP=40;Dels=0.0;FS=2.151;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.268;QD=12.42;ReadPosRankSum=1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325324    GT:AD:DP:GQ:PL    0/1:21,19:40:99:527,0,637
5    61781127    rs26640    C    A    917.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507640    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:951,69,0
5    61785240    rs36030071    G    A    177.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325324    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
5    61808271    .    A    G    119.98    MQFilter40    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.46;DP=48;Dels=0.0;FS=8.737;HRun=0;HaplotypeScore=0.0;MQ=27.01;MQ0=5;MQRankSum=-0.944;QD=2.5;ReadPosRankSum=0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325324    GT:AD:DP:GQ:PL    0/1:31,17:48:99:150,0,717
5    61826663    rs32179    G    T    317.26    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.267;DB;DP=21;Dels=0.0;FS=2.969;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=15.11;ReadPosRankSum=-0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502862    GT:AD:DP:GQ:PL    0/1:8,13:21:99:347,0,273
5    61847073    rs32170    G    C    766.17    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=54;Dels=0.0;FS=7.66;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.989;QD=14.19;ReadPosRankSum=1.559;SNPEFF_AMINO_ACID_CHANGE=T360;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_61847050_61847163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540553    GT:AD:DP:GQ:PL    0/1:29,25:54:99:796,0,770
5    62073118    rs1845526    G    C    152.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.61;MQ0=0;QD=15.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ISCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426679    GT:AD:DP:GQ:PL    1/1:0,10:10:18.02:186,18,0
5    63890387    rs4700641    C    T    622.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS7BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334025    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:656,48,0
5    63905068    rs889248    A    G    2078.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=I255V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_63904988_63908139;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS7BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334025    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2112,159,0
5    63991473    rs2305962    G    C    1568.15    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=106;Dels=0.0;FS=8.128;HRun=1;HaplotypeScore=1.6644;MQ=59.78;MQ0=0;MQRankSum=-0.348;QD=14.79;ReadPosRankSum=-0.417;SNPEFF_AMINO_ACID_CHANGE=A111P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_63991334_63991491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM159B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389074    GT:AD:DP:GQ:PL    0/1:55,51:106:99:1598,0,1750
5    64023981    rs275819    C    T    257.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=22;Dels=0.0;FS=2.318;HRun=3;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.657;QD=11.72;ReadPosRankSum=0.657;SNPEFF_AMINO_ACID_CHANGE=K77;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_64023934_64024006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SREK1IP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513458    GT:AD:DP:GQ:PL    0/1:11,11:22:99:288,0,392
5    64070617    .    A    AAATTATGAC    3308.40    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.758;DP=59;FS=6.282;HRun=0;HaplotypeScore=380.0826;IndelType=I;MQ=51.73;MQ0=0;MQRankSum=-3.416;QD=56.07;ReadPosRankSum=-2.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    0/1:34,13:59:99:3308,0,2471
5    64070618    .    T    A    88.84    HaplotypeScoreFilter13;QDFilter2    AB=0.893;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.55;DP=59;Dels=0.0;FS=9.777;HRun=1;HaplotypeScore=22.9711;MQ=51.73;MQ0=0;MQRankSum=2.238;QD=1.51;ReadPosRankSum=-3.987;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    0/1:50,6:59:99:119,0,1221
5    64077583    rs34500591    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
5    64077647    rs55793256    A    G    45.55    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.0;QD=4.14;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    0/1:7,4:11:75.54:76,0,249
5    64084746    rs72099597    CT    C    404.47    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.666;DB;DP=41;FS=1.949;HRun=11;HaplotypeScore=111.8313;IndelType=D;MQ=59.7;MQ0=0;MQRankSum=-0.118;QD=9.87;ReadPosRankSum=0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    0/1:18,23:41:99:444,0,448
5    64097325    rs10050850    C    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
5    64099941    .    T    TA    250.83    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.154;DP=17;FS=0.0;HRun=11;HaplotypeScore=43.3565;IndelType=I;MQ=59.92;MQ0=0;MQRankSum=0.979;QD=14.75;ReadPosRankSum=-0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    0/1:6,11:17:47.87:290,0,48
5    64273018    rs1309581    G    A    1207.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7172;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_AMINO_ACID_CHANGE=T403;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_64272962_64273065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    1/1:0,40:41:93.26:1240,93,0
5    64313879    rs2910769    G    A    1689.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=37.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381070    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1723,129,0
5    64447777    rs17206779    C    T    442.53    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.548;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.29;MQ0=0;MQRankSum=0.558;QD=13.83;ReadPosRankSum=-0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381055    GT:AD:DP:GQ:PL    0/1:15,16:32:99:473,0,363
5    64454183    rs1423351    T    C    407.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381055    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:441,33,0
5    64466755    rs78912716    A    ACT    248    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=18.4344;IndelType=I;MQ=55.21;MQ0=0;QD=49.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417396    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:290,15,0
5    64509707    rs6871603    T    G    67.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=13.49;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261306    GT:AD:DP:GQ:PL    0/1:2,3:5:50.30:97,0,50
5    64520614    rs2287906    T    C    73.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.52;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261306    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,144
5    64569405    rs1423424    T    A    134.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.164;QD=8.99;ReadPosRankSum=-0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261306    GT:AD:DP:GQ:PL    0/1:10,5:15:99:165,0,340
5    64747918    rs3830368    T    TG    869.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=36.2522;IndelType=I;MQ=59.59;MQ0=0;QD=45.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261306    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:912,57,0
5    64766519    rs181517355    A    T    366.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=26.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261306    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:399,33,0
5    64814188    rs3050538    AAGATGGC    A    431.38    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=75.9649;IndelType=D;MQ=45.77;MQ0=0;MQRankSum=-2.637;QD=39.22;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506282    GT:AD:DP:GQ:PL    0/1:5,6:11:99:470,0,595
5    64824676    rs77825310    CTA    C    237.59    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=2.372;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=48.8698;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.331;QD=15.84;ReadPosRankSum=-1.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502997    GT:AD:DP:GQ:PL    0/1:8,7:15:99:277,0,419
5    64825102    rs1017576    C    T    321.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242872    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:354,27,0
5    64847246    rs13160676    C    T    166.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242872    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
5    64847543    rs6893491    T    C    915.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242872    GT:AD:DP:GQ:PL    1/1:0,31:31:72.24:949,72,0
5    64848412    rs3213939    C    T    1257.51    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=3.691;DB;DP=66;Dels=0.0;FS=1.216;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=19.05;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242872    GT:AD:DP:GQ:PL    0/1:25,41:66:99:1288,0,644
5    64848442    rs3213938    T    C    1505.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242872    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1539,117,0
5    64850478    rs17828842    T    A    108.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.56;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242872    GT:AD:DP:GQ:PL    0/1:3,4:7:99:139,0,102
5    64850885    rs62369036    C    G    320.90    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.586;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=20.06;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396679    GT:AD:DP:GQ:PL    0/1:5,11:16:99:351,0,141
5    64858955    rs9791024    A    C    219.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.34;MQ0=0;QD=24.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504508    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:252,21,0
5    64859027    rs402645    C    G    523.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=30.78;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396679    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:556,42,0
5    64863285    rs3756301    A    C    480.95    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.285;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.89;MQ0=0;MQRankSum=-0.662;QD=22.9;ReadPosRankSum=-0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261308    GT:AD:DP:GQ:PL    0/1:6,15:21:99:511,0,183
5    64863484    rs71608598    T    TA    45.01    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=17;FS=0.0;HRun=13;HaplotypeScore=65.8003;IndelType=I;MQ=55.8;MQ0=0;MQRankSum=-0.271;QD=2.65;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261308    GT:AD:DP:GQ:PL    0/1:11,5:17:84.04:84,0,112
5    64865346    rs149512    A    T    31.89    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=3.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508982    GT:AD:DP:GQ:PL    0/1:5,4:9:61.88:62,0,165
5    64865405    rs149208    A    G    816.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508982    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:849,63,0
5    64865658    rs3752673    T    C    437.60    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=27;Dels=0.0;FS=2.593;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.013;QD=16.21;ReadPosRankSum=1.396;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508982    GT:AD:DP:GQ:PL    0/1:13,14:27:99:468,0,306
5    64865975    rs36223    C    T    114.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503435    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:147,12,0
5    64879269    rs62369040    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    64881578    rs27140    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    64881936    rs27141    A    G    1594.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=P419;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_64881826_64882008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538977    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1628,123,0
5    64885885    rs246400    C    T    148.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=21.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261308    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:181,15,0
5    64887915    rs154856    T    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261308    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    64890479    rs61511730    A    C    1059.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9861;MQ=59.09;MQ0=0;QD=23.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231524    GT:AD:DP:GQ:PL    1/1:0,46:46:96.25:1093,96,0
5    64892611    rs154859    A    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231524    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    64901002    rs154943    A    G    196.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508808    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:229,18,0
5    64906617    rs37330    T    A    389.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505205    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:423,33,0
5    64919877    rs462907    C    G    195.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231524    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:229,18,0
5    64919991    rs154854    G    A    805.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231524    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:838,63,0
5    64920774    rs79366581    G    GT    622.01    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.664;DB;DP=34;FS=0.0;HRun=2;HaplotypeScore=211.6022;IndelType=I;MQ=61.26;MQ0=0;MQRankSum=0.941;QD=18.29;ReadPosRankSum=-0.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513794    GT:AD:DP:GQ:PL    0/1:15,19:34:99:661,0,390
5    64920803    rs37254    C    T    1551.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.93;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513794    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1584,120,0
5    64933457    .    C    CA    97.77    PASS    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DP=37;FS=0.0;HRun=15;HaplotypeScore=253.8869;IndelType=I;MQ=56.15;MQ0=0;MQRankSum=1.037;QD=2.64;ReadPosRankSum=-0.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    0/1:28,7:37:99:137,0,228
5    64933505    rs11741124    A    G    694.89    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=2.885;DB;DP=66;Dels=0.0;FS=7.43;HRun=0;HaplotypeScore=6.763;MQ=56.73;MQ0=0;MQRankSum=1.702;QD=10.53;ReadPosRankSum=-0.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    0/1:38,27:66:99:725,0,603
5    64942799    rs154955    A    G    453.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.54;MQ0=0;QD=37.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:487,36,0
5    64942852    .    C    CT    134.07    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DP=33;FS=0.0;HRun=15;HaplotypeScore=277.9935;IndelType=I;MQ=51.97;MQ0=0;MQRankSum=0.579;QD=4.06;ReadPosRankSum=-0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    0/1:20,9:33:99:173,0,128
5    64946571    rs17240981    G    A    416.02    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=2.5;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.658;QD=21.9;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    0/1:6,13:19:99:446,0,181
5    64946836    rs154853    G    T    120.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
5    64948169    .    T    TTC    320.21    PASS    AC=2;AF=1.00;AN=2;DP=10;FS=0.0;HRun=0;HaplotypeScore=58.5699;IndelType=I;MQ=63.17;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    1/1:1,9:10:29.90:362,30,0
5    64948611    rs27148    A    G    125.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508304    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
5    64954159    rs28084    A    G    534.34    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.401;DB;DP=36;Dels=0.0;FS=2.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=14.84;ReadPosRankSum=0.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    0/1:15,21:36:99:564,0,500
5    64954374    rs17830886    A    G    356.52    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.512;QD=13.2;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504751    GT:AD:DP:GQ:PL    0/1:15,12:27:99:387,0,461
5    64956366    rs37350    A    G    713.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504751    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:747,57,0
5    64957686    rs37347    A    G    108.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504751    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:141,12,0
5    64957718    rs37346    T    C    403.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504751    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:436,33,0
5    64960311    rs3830443    A    ATCTC    5086.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.0;HRun=0;HaplotypeScore=274.6332;IndelType=I;MQ=58.45;MQ0=0;QD=62.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509234    GT:AD:DP:GQ:PL    1/1:10,66:81:99:5086,219,0
5    64965900    rs1549192    T    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231526    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:75,0,27
5    64968170    rs66547103    AT    A    745.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=10;HaplotypeScore=137.8566;IndelType=D;MQ=59.96;MQ0=0;QD=21.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381007    GT:AD:DP:GQ:PL    1/1:2,31:35:92.01:787,92,0
5    64968352    rs754784    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381007    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    64976687    rs3213798    C    T    303.95    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=2.676;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.196;QD=20.26;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381007    GT:AD:DP:GQ:PL    0/1:4,11:15:99:334,0,107
5    64976763    rs1978468    G    A    165.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381007    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
5    65004206    rs17241952    T    A    109.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.951;QD=10.94;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381007    GT:AD:DP:GQ:PL    0/1:5,5:10:99:139,0,184
5    65008946    rs3833969    GT    G    348.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=10;HaplotypeScore=49.116;IndelType=D;MQ=61.07;MQ0=0;QD=17.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381007    GT:AD:DP:GQ:PL    1/1:5,15:20:44.98:391,45,0
5    65016452    rs9291846    A    G    483.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381007    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:516,39,0
5    65029301    rs34986    A    G    3013.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.03;MQ0=1;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340159    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3046,258,0
5    65054811    rs40107    A    G    361.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340159    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:395,30,0
5    65054824    rs188642654    A    G    109.18    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=18.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340159    GT:AD:DP:GQ:PL    0/1:1,5:6:26.18:139,0,26
5    65073224    rs34979    C    A    2193.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340159    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2227,163,0
5    65075858    rs252648    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340159    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    65083865    rs6862580    A    G    266.29    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=14.02;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506677    GT:AD:DP:GQ:PL    0/1:9,10:19:99:296,0,281
5    65108215    rs2254485    A    G    869.86    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.621;DB;DP=73;Dels=0.0;FS=2.035;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=1.751;QD=11.92;ReadPosRankSum=0.776;SNPEFF_AMINO_ACID_CHANGE=P369;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_65108082_65108218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511299    GT:AD:DP:GQ:PL    0/1:40,33:73:99:900,0,1139
5    65108409    rs1316721    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507201    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    65288791    rs27132    A    G    381.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284037    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:414,30,0
5    65309609    rs433773    G    C    90.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284037    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
5    65317181    rs706679    C    T    1183    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=L189;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_65317150_65317213;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284037    GT:AD:DP:GQ:PL    1/1:0,36:36:87.29:1216,87,0
5    65317332    rs784276    A    T    291.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284037    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:325,24,0
5    65317338    rs706680    T    C    181.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284037    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:214,18,0
5    65321311    rs3213837    C    T    3856.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.8;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=S274L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_65321308_65321380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284037    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3856,283,0
5    65338746    rs56037754    C    T    132.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=57.66;MQ0=0;MQRankSum=0.729;QD=13.29;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284037    GT:AD:DP:GQ:PL    0/1:4,6:10:99:163,0,134
5    65349061    rs36302    T    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284037    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
5    65613914    rs192624840    C    T    168.56    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.33;MQ0=0;MQRankSum=-2.811;QD=8.43;ReadPosRankSum=-3.723;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-305P14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510964    GT:AD:DP:GQ:PL    0/1:11,9:20:99:199,0,400
5    66084260    rs2289881    G    T    40.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.24;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403625    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:71,0,30
5    66085585    rs35948700    A    G    960.93    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.962;DB;DP=66;Dels=0.0;FS=1.008;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.23;QD=14.56;ReadPosRankSum=0.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478569    GT:AD:DP:GQ:PL    0/1:34,32:66:99:991,0,1034
5    66166614    rs36138    G    A    431.54    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=34;Dels=0.0;FS=1.377;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.472;QD=12.69;ReadPosRankSum=0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403625    GT:AD:DP:GQ:PL    0/1:20,14:34:99:462,0,584
5    66195610    rs461806    C    T    44.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.12;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403625    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:74,0,33
5    66195701    rs458115    C    T    329.46    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.528;QD=15.69;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403625    GT:AD:DP:GQ:PL    0/1:10,11:21:99:359,0,343
5    66198350    rs464659    G    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403625    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
5    66406143    rs2545394    G    A    865.90    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.449;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.365;MQ=60.0;MQ0=0;MQRankSum=-0.383;QD=18.04;ReadPosRankSum=1.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261569    GT:AD:DP:GQ:PL    0/1:18,29:48:99:896,0,607
5    66416764    rs2254790    C    A    300.71    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.182;QD=25.06;ReadPosRankSum=-1.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261569    GT:AD:DP:GQ:PL    0/1:2,10:12:50.41:331,0,50
5    66429329    rs2371882    G    T    5814.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261569    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5815,427,0
5    66459878    rs1705399    G    C    341.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_AMINO_ACID_CHANGE=R1430P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_66458975_66462879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261569    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:375,33,0
5    66480004    rs1697144    T    C    1400.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.51;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=I223V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_66478103_66480413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD180;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256447    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1433,108,0
5    66492725    rs3733912    G    C    88.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256447    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
5    66760392    rs145204033    G    A    460.96    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.295;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.643;QD=17.73;ReadPosRankSum=-0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-357D18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515184    GT:AD:DP:GQ:PL    0/1:12,14:26:99:491,0,349
5    67569746    rs171649    G    A    1651    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.874;DB;DP=146;Dels=0.0;FS=0.672;HRun=0;HaplotypeScore=0.8941;MQ=59.87;MQ0=0;MQRankSum=1.699;QD=11.31;ReadPosRankSum=-1.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517412    GT:AD:DP:GQ:PL    0/1:87,59:146:99:1681,0,2702
5    67576330    rs74634187    CT    C    88.91    QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=1.564;DB;DP=169;FS=4.471;HRun=15;HaplotypeScore=1095.4445;IndelType=D;MQ=56.27;MQ0=0;MQRankSum=-0.805;QD=0.53;ReadPosRankSum=-0.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274335    GT:AD:DP:GQ:PL    0/1:114,33:169:99:128,0,1975
5    67587994    rs3730087    C    T    293.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=22;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.9996;MQ=60.0;MQ0=0;MQRankSum=0.89;QD=13.35;ReadPosRankSum=1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274335    GT:AD:DP:GQ:PL    0/1:12,10:22:99:324,0,428
5    67588148    rs3730089    G    A    1082.49    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.716;DB;DP=75;Dels=0.0;FS=0.919;HRun=0;HaplotypeScore=1.6643;MQ=59.38;MQ0=0;MQRankSum=0.215;QD=14.43;ReadPosRankSum=0.325;SNPEFF_AMINO_ACID_CHANGE=M26I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_67588087_67588189;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320694    GT:AD:DP:GQ:PL    0/1:38,37:75:99:1112,0,1121
5    67592281    rs895304    G    A    129.21    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=10.77;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517698    GT:AD:DP:GQ:PL    0/1:7,5:12:99:159,0,247
5    68150567    rs6865240    A    G    165.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-181E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510889    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
5    68150601    rs6886644    T    G    245.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-181E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510889    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
5    68150939    rs10471758    A    G    1350.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.23;MQ0=0;MQRankSum=-0.289;QD=36.5;ReadPosRankSum=-1.155;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTC-340D7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503268    GT:AD:DP:GQ:PL    1/1:1,36:37:80.65:1383,81,0
5    68150992    rs6887308    T    C    677.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9326;MQ=58.89;MQ0=0;MQRankSum=-1.404;QD=32.26;ReadPosRankSum=1.404;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTC-340D7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503268    GT:AD:DP:GQ:PL    1/1:1,20:21:22.40:710,22,0
5    68409094    rs164393    A    C    734.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396591    GT:AD:DP:GQ:PL    1/1:0,23:24:63.19:768,63,0
5    68411010    rs240809    C    T    320.72    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.142;DB;DP=33;Dels=0.0;FS=2.643;HRun=1;HaplotypeScore=2.7652;MQ=49.29;MQ0=0;MQRankSum=-0.556;QD=9.72;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396591    GT:AD:DP:GQ:PL    0/1:14,18:33:99:351,0,278
5    68411383    rs164580    A    T    38.67    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=4.83;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396591    GT:AD:DP:GQ:PL    0/1:5,3:8:68.67:69,0,169
5    68412048    rs34215592    A    AT    890.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=51.1517;IndelType=I;MQ=61.66;MQ0=0;QD=38.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396591    GT:AD:DP:GQ:PL    1/1:1,22:23:66.22:932,66,0
5    68413042    rs3840519    CT    C    1074.50    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=7.163;DB;DP=112;FS=1.601;HRun=9;HaplotypeScore=281.5698;IndelType=D;MQ=60.37;MQ0=0;MQRankSum=-0.294;QD=9.59;ReadPosRankSum=1.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396591    GT:AD:DP:GQ:PL    0/1:59,53:112:99:1114,0,1604
5    68417643    rs164578    C    T    170.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=18.98;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=H159;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_68417581_68417722;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438236    GT:AD:DP:GQ:PL    0/1:3,6:9:96.45:201,0,96
5    68417755    rs164577    A    G    32.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=0.198;QD=4.63;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512367    GT:AD:DP:GQ:PL    0/1:5,2:7:62.40:62,0,171
5    68419054    rs164572    A    T    1052.46    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=3.219;DB;DP=54;Dels=0.0;FS=7.625;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.122;QD=19.49;ReadPosRankSum=-0.437;SNPEFF_AMINO_ACID_CHANGE=T195;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_68419026_68419252;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438236    GT:AD:DP:GQ:PL    0/1:23,31:54:99:1082,0,574
5    68513599    rs2242350    G    T    224.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503793    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:257,21,0
5    68581389    rs3890705    G    A    424.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383374    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:457,36,0
5    68587900    rs6866993    A    G    720.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383374    GT:AD:DP:GQ:PL    1/1:0,19:19:57.16:753,57,0
5    68596068    rs28704183    C    G    1013.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383374    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1046,75,0
5    68610009    rs28462372    A    C    234.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=21.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383374    GT:AD:DP:GQ:PL    1/1:0,11:11:21.06:267,21,0
5    68616079    rs10471773    G    A    1000.81    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=2.506;DB;DP=110;Dels=0.0;FS=10.224;HRun=0;HaplotypeScore=2.8662;MQ=59.58;MQ0=0;MQRankSum=0.003;QD=9.1;ReadPosRankSum=1.529;SNPEFF_AMINO_ACID_CHANGE=R97*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_5_68616064_68616407;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC125;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000383374    GT:AD:DP:GQ:PL    0/1:76,34:110:99:1031,0,2145
5    68616331    rs10471774    C    T    2083.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.67;MQ0=0;MQRankSum=-1.176;QD=36.55;ReadPosRankSum=0.433;SNPEFF_AMINO_ACID_CHANGE=V13M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_68616064_68616407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC125;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383374    GT:AD:DP:GQ:PL    1/1:1,56:57:99:2116,128,0
5    68662136    rs4252228    G    A    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217893    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
5    68667263    rs111561357    TCCC    T    363.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=15;HaplotypeScore=335.3025;IndelType=D;MQ=40.99;MQ0=0;QD=8.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282891    GT:AD:DP:GQ:PL    1/1:11,24:41:41.06:406,41,0
5    68696035    rs13155364    G    GTTTATTTA    424.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=81.8859;IndelType=I;MQ=56.03;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282891    GT:AD:DP:GQ:PL    1/1:8,6:14:18.06:466,18,0
5    68706252    rs10940223    G    T    1007.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282891    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1040,78,0
5    68706438    rs6871685    G    A    1704.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.51;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282891    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1737,126,0
5    68709650    rs12659035    T    C    215.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282891    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
5    68720419    rs299099    T    G    1007.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515844    GT:AD:DP:GQ:PL    1/1:0,30:30:81.24:1040,81,0
5    68728544    rs299075    G    A    735.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282886    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:769,60,0
5    68728824    rs61736168    C    T    1216.80    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DB;DP=80;Dels=0.0;FS=1.906;HRun=0;HaplotypeScore=0.9332;MQ=58.9;MQ0=0;MQRankSum=0.871;QD=15.21;ReadPosRankSum=-0.219;SNPEFF_AMINO_ACID_CHANGE=Y353;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_68728749_68728920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413223    GT:AD:DP:GQ:PL    0/1:38,39:80:99:1247,0,1181
5    68728980    rs11345515    C    CT    55.16    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.849;DB;DP=41;FS=0.0;HRun=24;HaplotypeScore=324.2441;IndelType=I;MQ=51.31;MQ0=0;MQRankSum=-2.034;QD=1.35;ReadPosRankSum=-2.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282886    GT:AD:DP:GQ:PL    1/1:31,8:41:7.50:96,8,0
5    68927676    rs79147590    T    C    42.72    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.45;MQ0=0;MQRankSum=0.731;QD=8.54;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC139495.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513902    GT:AD:DP:GQ:PL    1/1:1,4:5:6.02:74,6,0
5    68928618    .    A    C    48.72    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.221;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=7.75;MQ0=85;MQRankSum=1.819;QD=0.39;ReadPosRankSum=-2.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC139495.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513902    GT:AD:DP:GQ:PL    0/1:105,21:126:78.72:79,0,94
5    68929183    .    C    G    113.14    MQFilter40    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.76;MQ0=31;MQRankSum=-0.953;QD=2.06;ReadPosRankSum=0.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC139495.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513902    GT:AD:DP:GQ:PL    0/1:36,19:55:99:143,0,267
5    68929424    rs148552304    T    C    344.78    MQFilter40    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=83;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=1.9399;MQ=25.3;MQ0=33;MQRankSum=-0.736;QD=4.1;ReadPosRankSum=0.446;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC139495.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513902    GT:AD:DP:GQ:PL    0/1:63,20:83:99:375,0,819
5    69515620    rs72647239    G    A    965.57    MQFilter40    AB=0.234;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=141;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.6651;MQ=14.2;MQ0=40;MQRankSum=-0.262;QD=6.85;ReadPosRankSum=0.829;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1415C14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511282    GT:AD:DP:GQ:PL    0/1:33,108:141:73.17:996,0,73
5    69515684    .    G    A    211.77    MQFilter40;QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.697;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.4744;MQ=9.78;MQ0=167;MQRankSum=1.597;QD=0.85;ReadPosRankSum=-1.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1415C14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511282    GT:AD:DP:GQ:PL    0/1:202,47:250:99:242,0,726
5    69515692    .    G    GT    296.41    QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=4.591;DP=41;DS;FS=0.0;HRun=1;HaplotypeScore=247.941;IndelType=I;MQ=9.15;MQ0=184;MQRankSum=1.343;QD=1.19;ReadPosRankSum=0.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1415C14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511282    GT:AD:DP:GQ:PL    0/1:212,38:41:99:335,0,939
5    69717719    .    G    A    201.10    MQFilter40    AC=2;AF=1.00;AN=2;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.55;MQ0=3;QD=18.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=GTF2H2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412385    GT:AD:DP:GQ:PL    1/1:3,8:11:21.06:234,21,0
5    69730101    .    T    C    903.65    MQFilter40    AC=2;AF=1.00;AN=2;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=22.08;MQ0=14;QD=15.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=GTF2H2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412385    GT:AD:DP:GQ:PL    1/1:11,48:59:95.97:937,96,0
5    69807145    .    C    G    254.40    MQFilter40    AC=2;AF=1.00;AN=2;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=22.41;MQ0=5;QD=14.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-497H16.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512224    GT:AD:DP:GQ:PL    1/1:0,17:17:27.06:287,27,0
5    70081138    rs141740199    CA    C    569.18    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=2.246;DB;DP=158;FS=19.297;HRun=17;HaplotypeScore=1146.7378;IndelType=D;MQ=35.56;MQ0=11;MQRankSum=1.06;QD=3.23;ReadPosRankSum=3.514;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-589F5.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433447    GT:AD:DP:GQ:PL    0/1:119,50:158:99:608,0,455
5    70081142    .    A    G    1720.69    HaplotypeScoreFilter13;MQFilter40    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.992;DP=178;Dels=0.0;FS=15.929;HRun=0;HaplotypeScore=91.6234;MQ=35.36;MQ0=13;MQRankSum=0.964;QD=9.67;ReadPosRankSum=-0.798;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-589F5.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433447    GT:AD:DP:GQ:PL    0/1:111,67:178:99:1751,0,1025
5    70298145    .    C    T    31.82    MQFilter40    AC=2;AF=1.00;AN=2;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.62;MQ0=11;QD=2.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447012    GT:AD:DP:GQ:PL    1/1:11,2:13:6.01:63,6,0
5    70308251    rs28409706    C    T    638.73    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=2.877;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.2;QD=11.01;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=A164;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_70308175_70308745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000194097    GT:AD:DP:GQ:PL    0/1:36,22:58:99:669,0,1116
5    70357189    .    C    A    52.53    MQFilter40;QDFilter2    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DP=58;Dels=0.0;FS=2.618;HRun=8;HaplotypeScore=1.3123;MQ=27.42;MQ0=22;MQRankSum=0.494;QD=0.91;ReadPosRankSum=-0.494;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508592    GT:AD:DP:GQ:PL    0/1:39,19:58:82.52:83,0,682
5    70357247    .    G    T    47.39    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.358;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.35;MQ0=17;MQRankSum=1.231;QD=2.15;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518275    GT:AD:DP:GQ:PL    1/1:15,7:22:6.02:79,6,0
5    70422738    .    A    C    64.46    MQFilter40    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.73;MQ0=0;QD=21.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1280N14.3-001;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512908    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
5    70493507    .    G    A    311.60    MQFilter40;QDFilter2    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.16;DP=211;Dels=0.0;FS=5.643;HRun=1;HaplotypeScore=1.8055;MQ=11.93;MQ0=99;MQRankSum=-0.302;QD=1.48;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GUSBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453222    GT:AD:DP:GQ:PL    0/1:154,56:211:99:342,0,593
5    70503590    .    T    C    68.97    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9981;MQ=29.97;MQ0=2;MQRankSum=0.937;QD=7.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GUSBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453222    GT:AD:DP:GQ:PL    0/1:6,3:9:98.96:99,0,117
5    70671939    rs4704164    C    G    373.45    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=3.737;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8154;MQ=51.82;MQ0=0;MQRankSum=-0.952;QD=12.88;ReadPosRankSum=-0.627;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMCHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415808    GT:AD:DP:GQ:PL    0/1:12,17:29:99:403,0,330
5    70672181    .    AC    A    1131.15    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=6.866;DP=102;FS=0.774;HRun=2;HaplotypeScore=254.329;IndelType=D;MQ=60.09;MQ0=0;MQRankSum=1.069;QD=11.09;ReadPosRankSum=-0.873;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMCHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457791    GT:AD:DP:GQ:PL    0/1:64,38:102:99:1170,0,2520
5    70751818    rs3748043    T    G    116.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.515;DB;DP=19;Dels=0.0;FS=2.694;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.639;QD=6.15;ReadPosRankSum=0.515;SNPEFF_AMINO_ACID_CHANGE=D38E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_70751442_70751916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:12,6:19:99:147,0,361
5    70762191    rs10079014    A    G    31.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=4.47;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:4,3:7:61.26:61,0,141
5    70763059    rs6452722    G    A    219.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3609;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=8.12;ReadPosRankSum=0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:18,9:27:99:249,0,626
5    70791010    rs2059196    T    A    32.22    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=2.93;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:8,3:11:62.21:62,0,292
5    70800475    rs3761966    C    T    908.06    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=69;Dels=0.0;FS=3.67;HRun=0;HaplotypeScore=0.8321;MQ=59.73;MQ0=0;MQRankSum=0.295;QD=13.16;ReadPosRankSum=1.236;SNPEFF_AMINO_ACID_CHANGE=R337C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_70800448_70800578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451951    GT:AD:DP:GQ:PL    0/1:36,32:69:99:938,0,1102
5    70805277    rs146917378    CT    C    954.71    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=5.774;DB;DP=91;FS=0.0;HRun=10;HaplotypeScore=300.1399;IndelType=D;MQ=59.0;MQ0=0;MQRankSum=1.404;QD=10.49;ReadPosRankSum=1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:41,48:91:99:994,0,941
5    70806711    rs715747    C    G    3286.34    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.951;DB;DP=234;Dels=0.0;FS=2.895;HRun=0;HaplotypeScore=2.726;MQ=59.74;MQ0=0;MQRankSum=-0.929;QD=14.04;ReadPosRankSum=0.001;SNPEFF_AMINO_ACID_CHANGE=I1264M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_70805292_70806978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:126,107:234:99:3286,0,4086
5    70806958    rs6886336    G    A    1096.66    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.874;DB;DP=80;Dels=0.0;FS=4.248;HRun=0;HaplotypeScore=2.6785;MQ=59.98;MQ0=0;MQRankSum=-1.065;QD=13.71;ReadPosRankSum=2.096;SNPEFF_AMINO_ACID_CHANGE=V1347M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_70805292_70806978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:42,38:80:99:1127,0,1208
5    70807016    rs77202954    CT    C    521.09    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=5.879;DB;DP=54;FS=1.688;HRun=6;HaplotypeScore=218.7735;IndelType=D;MQ=60.4;MQ0=0;MQRankSum=-0.513;QD=9.65;ReadPosRankSum=0.492;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000437938    GT:AD:DP:GQ:PL    0/1:32,22:54:99:560,0,906
5    70807073    rs421128    C    T    290.07    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=12.09;ReadPosRankSum=-1.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444711    GT:AD:DP:GQ:PL    0/1:13,11:24:99:320,0,459
5    70818329    rs34331239    CA    C    191.34    QDFilter2    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=2.499;DB;DP=107;DS;FS=4.084;HRun=16;HaplotypeScore=490.445;IndelType=D;MQ=57.68;MQ0=0;MQRankSum=0.153;QD=1.79;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:77,19:107:99:230,0,840
5    70834926    rs276589    T    C    479.12    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.297;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=12.61;ReadPosRankSum=1.808;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:20,18:38:99:509,0,475
5    70837260    .    G    GT    30.68    QDFilter2    AB=0.906;AC=1;AF=0.50;AN=2;BaseQRankSum=1.618;DP=87;FS=3.787;HRun=14;HaplotypeScore=491.6286;IndelType=I;MQ=56.18;MQ0=0;MQRankSum=-0.936;QD=0.35;ReadPosRankSum=0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:75,7:87:69.70:70,0,765
5    70837295    rs6453014    A    C    1278.94    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.273;DB;DP=118;Dels=0.0;FS=2.818;HRun=0;HaplotypeScore=4.3977;MQ=56.92;MQ0=0;MQRankSum=0.196;QD=10.84;ReadPosRankSum=0.67;SNPEFF_AMINO_ACID_CHANGE=I149L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_70837284_70837509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380675    GT:AD:DP:GQ:PL    0/1:59,57:118:99:1309,0,1450
5    70839996    rs7380280    G    C    56.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358731    GT:AD:DP:GQ:PL    0/1:4,3:7:86.10:86,0,134
5    70858194    rs277941    C    T    830.42    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.911;DB;DP=82;Dels=0.0;FS=3.169;HRun=0;HaplotypeScore=0.0;MQ=54.47;MQ0=0;MQRankSum=-0.449;QD=10.13;ReadPosRankSum=1.052;SNPEFF_AMINO_ACID_CHANGE=R2078;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_70858101_70858347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451951    GT:AD:DP:GQ:PL    0/1:51,31:82:99:860,0,1546
5    70888689    .    A    T    47.26    QDFilter2    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.805;DP=24;Dels=0.0;FS=2.869;HRun=4;HaplotypeScore=7.6597;MQ=55.0;MQ0=0;MQRankSum=-1.269;QD=1.97;ReadPosRankSum=3.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323375    GT:AD:DP:GQ:PL    0/1:13,11:24:77.25:77,0,397
5    70892027    rs148203893    GATTAAGT    G    996.93    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=5.206;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=310.1374;IndelType=D;MQ=52.45;MQ0=0;MQRankSum=-3.543;QD=21.67;ReadPosRankSum=-0.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323375    GT:AD:DP:GQ:PL    0/1:30,16:46:99:1036,0,3071
5    70922616    rs12516456    G    A    188.33    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=2.817;HRun=2;HaplotypeScore=0.0;MQ=56.27;MQ0=0;MQRankSum=2.367;QD=15.69;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323375    GT:AD:DP:GQ:PL    0/1:5,7:12:99:218,0,140
5    70930966    rs277984    A    G    846.20    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=48;Dels=0.0;FS=1.285;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=17.63;ReadPosRankSum=-0.909;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505787    GT:AD:DP:GQ:PL    0/1:21,27:48:99:876,0,718
5    70945075    rs10064079    A    G    443.36    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DB;DP=59;Dels=0.0;FS=1.15;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=7.51;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=A228;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_70944924_70945080;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000509539    GT:AD:DP:GQ:PL    0/1:39,20:59:99:473,0,1200
5    70946113    rs169406    G    C    240.71    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.416;DB;DP=23;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=10.47;ReadPosRankSum=1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323375    GT:AD:DP:GQ:PL    0/1:12,11:23:99:271,0,433
5    70946123    rs182191    G    A    203.18    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=10.69;ReadPosRankSum=0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323375    GT:AD:DP:GQ:PL    0/1:9,10:19:99:233,0,301
5    70948654    rs2242372    G    A    229.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.031;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=-0.177;QD=12.78;ReadPosRankSum=-2.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509539    GT:AD:DP:GQ:PL    0/1:9,9:18:99:260,0,327
5    70952506    rs7443786    A    G    425.05    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.972;DB;DP=44;Dels=0.0;FS=1.511;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.049;QD=9.66;ReadPosRankSum=-1.426;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MCCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509539    GT:AD:DP:GQ:PL    0/1:24,20:44:99:455,0,873
5    71016462    rs5868607    CA    C    148.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=17.6524;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=0.198;QD=21.26;ReadPosRankSum=0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARTPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513096    GT:AD:DP:GQ:PL    0/1:2,5:7:74.95:188,0,75
5    71403273    rs3112401    T    C    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
5    71403306    rs3112402    T    A    108.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=27.16;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_71403222_71403542;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512974    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
5    71411718    rs1531312    T    C    406.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296755    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:440,36,0
5    71490962    rs1866374    A    G    3555.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.3288;MQ=54.26;MQ0=0;QD=29.14;SNPEFF_AMINO_ACID_CHANGE=I468V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_71489693_71491267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504492    GT:AD:DP:GQ:PL    1/1:0,122:122:99:3555,271,0
5    71492728    rs148313643    G    A    593.63    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=0.425;DB;DP=34;Dels=0.0;FS=1.394;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.46;ReadPosRankSum=-1.453;SNPEFF_AMINO_ACID_CHANGE=P1182;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_71489693_71496194;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296755    GT:AD:DP:GQ:PL    0/1:13,21:34:99:624,0,395
5    71494931    rs13153166    A    C    846.06    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.07;DB;DP=68;Dels=0.0;FS=2.298;HRun=0;HaplotypeScore=1.5983;MQ=59.73;MQ0=0;MQRankSum=0.574;QD=12.44;ReadPosRankSum=0.183;SNPEFF_AMINO_ACID_CHANGE=S1917R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_71489693_71496194;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296755    GT:AD:DP:GQ:PL    0/1:38,30:68:99:876,0,1251
5    71496419    rs3828616    A    G    84.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296755    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
5    71519664    rs3209157    C    T    488.13    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.42;MQ0=0;MQRankSum=1.282;QD=12.2;ReadPosRankSum=-1.254;SNPEFF_AMINO_ACID_CHANGE=G228D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_71519510_71519677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457646    GT:AD:DP:GQ:PL    0/1:18,22:40:99:518,0,573
5    71522125    rs9293821    A    T    543.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515404    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:577,45,0
5    71524163    rs10942927    A    T    819.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.306;DB;DP=58;Dels=0.0;FS=3.591;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.295;QD=14.13;ReadPosRankSum=1.042;SNPEFF_AMINO_ACID_CHANGE=L152;SNPEFF_CODON_CHANGE=ctT/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_71524093_71524195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457646    GT:AD:DP:GQ:PL    0/1:29,29:58:99:849,0,865
5    71528110    rs3213894    T    C    53.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=5.95;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261413    GT:AD:DP:GQ:PL    0/1:6,3:9:83.56:84,0,218
5    71739546    rs4267851    C    G    1193.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.42;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF366;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318442    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1227,102,0
5    71743024    rs10043295    G    C    1232.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF366;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318442    GT:AD:DP:GQ:PL    1/1:0,37:37:90.30:1266,90,0
5    71743322    rs10043368    G    A    391.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.758;QD=13.51;ReadPosRankSum=0.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF366;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318442    GT:AD:DP:GQ:PL    0/1:14,14:29:99:422,0,456
5    71756102    rs7721922    G    A    182.59    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=23;Dels=0.0;FS=4.619;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.169;QD=7.94;ReadPosRankSum=0.434;SNPEFF_AMINO_ACID_CHANGE=L408;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_71755992_71757337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF366;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318442    GT:AD:DP:GQ:PL    0/1:16,7:23:99:213,0,542
5    71756670    rs2278600    C    T    735.13    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-2.161;QD=14.14;ReadPosRankSum=0.934;SNPEFF_AMINO_ACID_CHANGE=E218;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_71755992_71757337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF366;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318442    GT:AD:DP:GQ:PL    0/1:28,23:52:99:765,0,867
5    72144463    rs463250    G    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337273    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
5    72147269    rs34655    A    G    269.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337273    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:303,24,0
5    72151807    rs41271135    G    A    324.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=21.63;ReadPosRankSum=0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515483    GT:AD:DP:GQ:PL    0/1:5,10:15:99:354,0,148
5    72151858    rs34660    T    A    246.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515483    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
5    72182857    rs4704045    A    G    638.06    PASS    AB=0.312;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.232;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.427;QD=19.94;ReadPosRankSum=0.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447967    GT:AD:DP:GQ:PL    0/1:10,22:32:99:668,0,301
5    72183850    rs7720717    A    G    71.70    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.25;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6647;MQ=58.78;MQ0=0;MQRankSum=0.25;QD=3.77;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447967    GT:AD:DP:GQ:PL    0/1:15,4:19:99:102,0,565
5    72184098    rs17606    C    T    1605.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=D10;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_72184065_72184130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519220    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1638,123,0
5    72188802    rs62360683    C    T    112.60    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.361;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5767;MQ=58.84;MQ0=0;MQRankSum=0.949;QD=5.63;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337273    GT:AD:DP:GQ:PL    0/1:14,6:20:99:143,0,501
5    72201039    .    T    TA    130.57    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.926;DP=28;FS=0.0;HRun=7;HaplotypeScore=138.1012;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.22;QD=4.66;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337273    GT:AD:DP:GQ:PL    0/1:21,7:28:99:170,0,524
5    72201058    rs250518    G    A    1032.38    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.487;QD=24.58;ReadPosRankSum=0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337273    GT:AD:DP:GQ:PL    0/1:12,30:42:99:1062,0,350
5    72302633    rs140622837    G    A    80.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.04;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287761    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
5    72347223    rs7712838    A    G    58.34    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.29;MQ0=0;MQRankSum=0.678;QD=5.3;ReadPosRankSum=-0.896;SNPEFF_AMINO_ACID_CHANGE=T296;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_72347176_72347233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512348    GT:AD:DP:GQ:PL    0/1:7,4:11:88.34:88,0,258
5    72348030    rs62362195    G    A    69.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.77;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341845    GT:AD:DP:GQ:PL    0/1:6,3:9:99:100,0,163
5    72351062    rs1200503    C    G    109.96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.22;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503302    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,169
5    72364673    rs470926    A    G    595.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.369;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.108;QD=10.83;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341845    GT:AD:DP:GQ:PL    0/1:33,22:55:99:626,0,1127
5    72378703    rs11349696    AT    A    104.24    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=30;FS=0.0;HRun=16;HaplotypeScore=163.0997;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=-1.196;QD=3.47;ReadPosRankSum=-1.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341845    GT:AD:DP:GQ:PL    0/1:18,11:30:99:143,0,140
5    72419041    rs7448965    T    C    257.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM171;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287773    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
5    72419267    rs638333    T    C    829.04    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=55;Dels=0.0;FS=1.065;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=15.07;ReadPosRankSum=0.116;SNPEFF_AMINO_ACID_CHANGE=F23L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_72419133_72419840;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM171;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287773    GT:AD:DP:GQ:PL    0/1:25,30:55:99:859,0,696
5    72419410    rs7731777    A    G    1203.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=G70;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_72419133_72419840;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM171;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287773    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1237,93,0
5    72798502    rs35246204    GTT    G    76.79    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=13;FS=0.0;HRun=14;HaplotypeScore=62.2587;IndelType=D;MQ=58.2;MQ0=0;MQRankSum=0.322;QD=5.91;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512257    GT:AD:DP:GQ:PL    0/1:7,5:13:24.94:116,0,25
5    72798724    rs347233    T    G    1211.73    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=0.26;DB;DP=83;Dels=0.0;FS=2.449;HRun=0;HaplotypeScore=1.9623;MQ=58.82;MQ0=0;MQRankSum=-0.631;QD=14.6;ReadPosRankSum=0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510787    GT:AD:DP:GQ:PL    0/1:42,41:83:99:1242,0,1201
5    72798812    rs137911027    G    A    1948.39    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.969;DB;DP=151;Dels=0.0;FS=0.612;HRun=2;HaplotypeScore=2.9114;MQ=57.2;MQ0=0;MQRankSum=-0.946;QD=12.9;ReadPosRankSum=-0.341;SNPEFF_AMINO_ACID_CHANGE=A129;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_72798741_72798942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380591    GT:AD:DP:GQ:PL    0/1:82,69:151:99:1978,0,2138
5    72804412    rs347232    G    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335895    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
5    72872888    rs150564208    CTGTCACT    C    4735.76    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=9.972;DB;DP=180;DS;FS=0.0;HRun=0;HaplotypeScore=1208.3895;IndelType=D;MQ=53.12;MQ0=0;MQRankSum=-8.037;QD=26.31;ReadPosRankSum=-0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296792    GT:AD:DP:GQ:PL    0/1:115,65:180:99:4736,0,13166
5    73069581    rs4704097    A    G    104.61    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=9.51;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:5,6:11:99:135,0,179
5    73072354    rs7714670    T    C    2280.74    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.355;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.9571;MQ=59.83;MQ0=0;MQRankSum=-0.735;QD=16.53;ReadPosRankSum=0.617;SNPEFF_AMINO_ACID_CHANGE=W225R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73072341_73072521;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:65,72:138:99:2311,0,1993
5    73076457    rs11949860    G    A    356.28    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.95;MQ0=0;MQRankSum=0.461;QD=13.2;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:13,14:27:99:386,0,426
5    73076474    rs71615798    GT    G    194.67    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=4.295;DB;DP=29;FS=0.0;HRun=10;HaplotypeScore=146.7116;IndelType=D;MQ=60.33;MQ0=0;MQRankSum=-0.489;QD=6.71;ReadPosRankSum=-0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:16,13:29:99:234,0,387
5    73076511    rs6453022    C    A    566.36    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.017;DB;DP=36;Dels=0.0;FS=1.377;HRun=1;HaplotypeScore=1.8857;MQ=59.66;MQ0=0;MQRankSum=-0.95;QD=15.73;ReadPosRankSum=-1.217;SNPEFF_AMINO_ACID_CHANGE=P284Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73076501_73076570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:15,21:36:99:596,0,420
5    73090165    rs35221176    A    AGTT    1571.50    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.208;DB;DP=50;FS=5.532;HRun=0;HaplotypeScore=182.4895;IndelType=I;MQ=58.16;MQ0=0;MQRankSum=-1.818;QD=31.43;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:22,27:50:99:1611,0,588
5    73090261    rs7716253    T    C    1537.21    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.385;DB;DP=98;Dels=0.0;FS=1.679;HRun=1;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=-0.549;QD=15.69;ReadPosRankSum=-0.542;SNPEFF_AMINO_ACID_CHANGE=A315;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73090227_73090279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:42,56:98:99:1567,0,1227
5    73091126    rs2973549    T    A    1285.20    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=118;Dels=0.0;FS=2.855;HRun=5;HaplotypeScore=0.5784;MQ=59.8;MQ0=0;MQRankSum=0.525;QD=10.89;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:53,64:118:99:1315,0,1629
5    73091228    rs2973548    C    T    1699.51    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=3.588;DB;DP=148;Dels=0.0;FS=30.903;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=11.48;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:88,60:148:99:1730,0,2392
5    73142411    rs34857445    A    AT    429.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=34.3133;IndelType=I;MQ=60.0;MQ0=0;QD=26.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    1/1:3,13:16:39.12:471,39,0
5    73144845    rs2973568    A    G    1886.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=S247;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73144801_73144912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296799    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1919,150,0
5    73153329    rs72772531    G    A    144.80    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=-0.198;QD=20.69;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:2,5:7:62.92:175,0,63
5    73153389    rs72182241    TACAC    T    344.53    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.572;DB;DP=25;FS=5.18;HRun=0;HaplotypeScore=209.1292;IndelType=D;MQ=57.12;MQ0=0;MQRankSum=-1.102;QD=13.78;ReadPosRankSum=0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:15,8:25:99:384,0,491
5    73153754    rs2973563    A    C    1535.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.495;QD=36.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    1/1:1,41:42:99:1569,100,0
5    73154250    rs10634993    C    CCTCA    698.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=29.9944;IndelType=I;MQ=48.72;MQ0=0;QD=77.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:740,27,0
5    73160730    rs1014550    G    A    1496.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=59.5;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1530,111,0
5    73160775    rs1979551    A    G    510.41    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.541;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.85;QD=18.9;ReadPosRankSum=0.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:11,16:27:99:540,0,350
5    73163831    rs2931423    C    T    1132.75    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.64;DB;DP=66;Dels=0.0;FS=3.646;HRun=0;HaplotypeScore=0.8667;MQ=59.65;MQ0=0;MQRankSum=0.218;QD=17.16;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=G448;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73163701_73163845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296799    GT:AD:DP:GQ:PL    0/1:29,36:66:99:1163,0,874
5    73163861    rs2931422    C    T    1684.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506334    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1717,135,0
5    73163965    rs2973558    C    A    364.75    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.084;DB;DP=38;Dels=0.0;FS=9.536;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.646;QD=9.6;ReadPosRankSum=-1.086;SNPEFF_AMINO_ACID_CHANGE=H467N;SNPEFF_CODON_CHANGE=Cat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73163925_73164052;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296799    GT:AD:DP:GQ:PL    0/1:21,17:38:99:395,0,765
5    73164138    rs34777247    AT    A    322.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=10;HaplotypeScore=63.474;IndelType=D;MQ=61.19;MQ0=0;QD=17.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506334    GT:AD:DP:GQ:PL    1/1:3,15:18:41.97:365,42,0
5    73164206    rs2973557    C    A    240.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506334    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
5    73164261    rs2931421    C    T    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    73165730    .    C    CA    148.47    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DP=15;FS=0.0;HRun=9;HaplotypeScore=89.3778;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=0.068;QD=9.9;ReadPosRankSum=2.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506334    GT:AD:DP:GQ:PL    0/1:7,8:15:99:187,0,140
5    73178550    rs2973528    T    G    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    73181913    rs61734875    T    C    1092.23    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.048;DB;DP=72;Dels=0.0;FS=0.932;HRun=1;HaplotypeScore=1.7262;MQ=59.68;MQ0=0;MQRankSum=0.81;QD=15.17;ReadPosRankSum=-0.232;SNPEFF_AMINO_ACID_CHANGE=A1098;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73181675_73181929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1122,0,1049
5    73190119    rs2973530    T    A    253.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504003    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
5    73190174    rs34729826    A    G    570.82    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.75;DB;DP=33;Dels=0.0;FS=2.945;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.203;QD=17.3;ReadPosRankSum=0.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504003    GT:AD:DP:GQ:PL    0/1:13,20:33:99:601,0,416
5    73196843    rs3749639    A    T    107.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.47;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,142
5    73197185    rs434065    A    C    445.17    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.329;DB;DP=39;Dels=0.0;FS=3.568;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.329;QD=11.41;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:23,16:39:99:475,0,775
5    73197200    rs384927    G    A    1118.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1152,87,0
5    73207372    rs1478453    T    A    2487.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.427;QD=36.06;ReadPosRankSum=-1.531;SNPEFF_AMINO_ACID_CHANGE=H1327Q;SNPEFF_CODON_CHANGE=caT/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73207100_73207400;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296799    GT:AD:DP:GQ:PL    1/1:1,68:69:99:2521,156,0
5    73207517    rs72774406    T    C    86.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=12.31;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-428C6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287898    GT:AD:DP:GQ:PL    0/1:3,4:7:99:116,0,101
5    73930442    rs300240    C    T    85.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508331    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
5    73930751    rs300239    C    T    1538.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.56;MQ0=0;QD=29.03;SNPEFF_AMINO_ACID_CHANGE=K447;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73930509_73932187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510316    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1571,123,0
5    73931246    rs442425    T    C    2068.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=30.42;SNPEFF_AMINO_ACID_CHANGE=S282;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73930509_73932187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510316    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2102,169,0
5    73932315    rs9176    T    C    208.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510316    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
5    73981270    rs820878    T    C    609.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_AMINO_ACID_CHANGE=L62S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_73980969_73981384;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261416    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:642,48,0
5    73992609    rs1665894    G    A    232.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=18;Dels=0.0;FS=2.162;HRun=0;HaplotypeScore=0.9992;MQ=58.71;MQ0=0;MQRankSum=1.022;QD=12.93;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261416    GT:AD:DP:GQ:PL    0/1:10,8:18:99:263,0,312
5    74011284    rs78084621    CT    C    323.03    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.412;DB;DP=30;FS=0.0;HRun=3;HaplotypeScore=72.5938;IndelType=D;MQ=59.59;MQ0=0;MQRankSum=0.023;QD=10.77;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261416    GT:AD:DP:GQ:PL    0/1:18,12:30:99:362,0,607
5    74011541    rs72764638    T    A    348.37    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=4.037;DB;DP=42;Dels=0.0;FS=11.881;HRun=14;HaplotypeScore=6.2958;MQ=57.04;MQ0=0;MQRankSum=-1.438;QD=8.29;ReadPosRankSum=-1.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261416    GT:AD:DP:GQ:PL    0/1:17,24:42:99:378,0,361
5    74017080    rs35491723    CTG    C    412.35    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=81.9424;IndelType=D;MQ=59.36;MQ0=0;MQRankSum=0.543;QD=21.7;ReadPosRankSum=-0.906;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509430    GT:AD:DP:GQ:PL    0/1:7,12:19:99:451,0,344
5    74021846    rs5868753    TACTCAA    T    1400.78    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=5.794;DB;DP=51;FS=0.0;HRun=0;HaplotypeScore=312.4344;IndelType=D;MQ=50.77;MQ0=0;MQRankSum=-3.397;QD=27.47;ReadPosRankSum=-0.847;SNPEFF_AMINO_ACID_CHANGE=FEY562Y;SNPEFF_CODON_CHANGE=tttgagtat/tat;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_5_74021766_74021951;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345239    GT:AD:DP:GQ:PL    0/1:26,25:51:99:1440,0,2091
5    74046464    rs17852781    C    T    405.64    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=33;Dels=0.0;FS=10.824;HRun=1;HaplotypeScore=0.6651;MQ=59.3;MQ0=0;MQRankSum=-0.922;QD=12.29;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=E111;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74046404_74046492;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000509097    GT:AD:DP:GQ:PL    0/1:18,15:33:99:436,0,558
5    74054595    rs10515191    A    G    218.58    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.769;QD=19.87;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296805    GT:AD:DP:GQ:PL    0/1:4,7:11:93.21:249,0,93
5    74063154    rs1043968    C    G    514.33    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.955;DB;DP=49;Dels=0.0;FS=1.124;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.811;QD=10.5;ReadPosRankSum=-1.604;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513356    GT:AD:DP:GQ:PL    0/1:27,22:49:99:544,0,821
5    74069863    rs6874609    A    G    716.82    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.463;DB;DP=57;Dels=0.0;FS=3.907;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.089;QD=12.58;ReadPosRankSum=1.301;SNPEFF_AMINO_ACID_CHANGE=T231;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74069693_74069885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296802    GT:AD:DP:GQ:PL    0/1:33,24:57:99:747,0,970
5    74072339    rs76069565    G    GA    186.94    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.512;DB;DP=19;FS=0.0;HRun=8;HaplotypeScore=40.2629;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=9.84;ReadPosRankSum=2.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380515    GT:AD:DP:GQ:PL    0/1:11,8:19:99:226,0,196
5    74097552    rs17670897    T    C    235.14    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=13.83;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380515    GT:AD:DP:GQ:PL    0/1:9,8:17:99:265,0,327
5    74324437    rs3811986    G    A    316.99    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.456;QD=15.85;ReadPosRankSum=2.127;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322348    GT:AD:DP:GQ:PL    0/1:9,11:20:99:347,0,298
5    74324451    rs35535831    C    T    330.67    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.693;QD=14.38;ReadPosRankSum=-2.616;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322348    GT:AD:DP:GQ:PL    0/1:12,11:23:99:361,0,391
5    74324548    rs3811987    G    A    709.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.221;DB;DP=52;Dels=0.0;FS=1.082;HRun=0;HaplotypeScore=1.6828;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=13.65;ReadPosRankSum=0.064;SNPEFF_AMINO_ACID_CHANGE=P439S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74323289_74326724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322348    GT:AD:DP:GQ:PL    0/1:28,24:52:99:740,0,938
5    74324902    rs4704166    C    T    986.66    PASS    AB=0.306;AC=1;AF=0.50;AN=2;BaseQRankSum=4.436;DB;DP=50;Dels=0.0;FS=4.742;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-2.028;QD=19.73;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=V321I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74323289_74326724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322348    GT:AD:DP:GQ:PL    0/1:15,34:50:99:1017,0,412
5    74442920    rs6888707    A    G    370.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.515;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.14;QD=20.6;ReadPosRankSum=0.14;SNPEFF_AMINO_ACID_CHANGE=T772;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74441812_74443330;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:6,12:18:99:401,0,178
5    74443132    rs1422698    C    T    2259.20    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.946;DB;DP=120;Dels=0.0;FS=3.469;HRun=1;HaplotypeScore=2.8891;MQ=59.81;MQ0=0;MQRankSum=0.737;QD=18.83;ReadPosRankSum=0.176;SNPEFF_AMINO_ACID_CHANGE=D702N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74441812_74443330;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:49,71:120:99:2289,0,1583
5    74450278    rs7704104    T    A    157.95    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.838;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=7.18;ReadPosRankSum=-0.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:16,6:22:99:188,0,571
5    74484275    rs10050948    C    T    186.83    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=23;Dels=0.0;FS=2.793;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=1.236;QD=8.12;ReadPosRankSum=0.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:16,7:23:99:217,0,597
5    74491715    rs10563854    TTCA    T    2135.40    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=8.038;DB;DP=112;FS=1.551;HRun=0;HaplotypeScore=454.0841;IndelType=D;MQ=56.83;MQ0=0;MQRankSum=-0.262;QD=19.07;ReadPosRankSum=-0.348;SNPEFF_AMINO_ACID_CHANGE=MN252N;SNPEFF_CODON_CHANGE=atgaac/aac;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_5_74491456_74492025;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:63,49:112:99:2174,0,3619
5    74506658    rs2219745    C    T    693.43    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.811;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=11.18;ReadPosRankSum=-0.521;SNPEFF_AMINO_ACID_CHANGE=L107;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74506653_74506690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:36,26:62:99:723,0,1136
5    74517954    rs2161370    A    G    136.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=12.44;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:6,5:11:99:167,0,213
5    74518317    rs80190080    T    TA    109.29    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=8;FS=0.0;HRun=9;HaplotypeScore=31.4697;IndelType=I;MQ=57.05;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:3,5:8:7.37:148,0,7
5    74526489    rs36009265    GT    G    350.36    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=26;FS=1.974;HRun=2;HaplotypeScore=74.5546;IndelType=D;MQ=60.42;MQ0=0;MQRankSum=-0.386;QD=13.48;ReadPosRankSum=-1.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274361    GT:AD:DP:GQ:PL    0/1:14,12:26:99:389,0,552
5    74639544    rs3064191    CTTGTA    C    488.87    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=115.4217;IndelType=D;MQ=43.61;MQ0=0;MQRankSum=-2.7;QD=37.61;ReadPosRankSum=0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442032    GT:AD:DP:GQ:PL    0/1:4,9:13:99:528,0,333
5    74639576    rs3064877    C    CAA    533.90    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=101.0064;IndelType=I;MQ=47.98;MQ0=0;MQRankSum=-1.813;QD=33.37;ReadPosRankSum=-0.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442032    GT:AD:DP:GQ:PL    0/1:6,10:16:99:573,0,191
5    74651084    rs3846662    A    G    226.69    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=6.13;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504466    GT:AD:DP:GQ:PL    0/1:25,12:37:99:257,0,925
5    74655726    rs3846663    C    T    320.32    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.556;QD=13.35;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508070    GT:AD:DP:GQ:PL    0/1:14,10:24:99:350,0,435
5    74674975    rs10462517    T    C    141.69    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=20.24;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261415    GT:AD:DP:GQ:PL    0/1:2,5:7:62.92:172,0,63
5    74675076    rs7700468    T    C    256.58    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.822;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=8.85;ReadPosRankSum=-0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261415    GT:AD:DP:GQ:PL    0/1:19,10:29:99:287,0,621
5    74676730    rs73763057    T    A    187.40    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=17.04;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261415    GT:AD:DP:GQ:PL    0/1:5,6:11:99:217,0,170
5    74681773    rs698912    T    C    162.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=11.63;ReadPosRankSum=-0.323;SNPEFF_AMINO_ACID_CHANGE=E431;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74681727_74681859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3BP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261415    GT:AD:DP:GQ:PL    0/1:8,6:14:99:193,0,298
5    74685520    rs3761743    A    G    211.64    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.222;QD=11.76;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261415    GT:AD:DP:GQ:PL    0/1:10,8:18:99:242,0,319
5    74877266    rs3213801    C    T    465.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.135;DB;DP=34;Dels=0.0;FS=8.039;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.207;QD=13.7;ReadPosRankSum=0.93;SNPEFF_AMINO_ACID_CHANGE=A219;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_74877034_74877273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380481    GT:AD:DP:GQ:PL    0/1:17,17:34:99:496,0,473
5    74882681    rs4703674    C    T    73.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.32;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508867    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:103,0,29
5    74886384    rs1018119    G    A    138.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=1.532;QD=12.56;ReadPosRankSum=1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515295    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,199
5    74921686    rs9332464    G    A    1692.60    PASS    AB=0.454;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=108;Dels=0.0;FS=9.043;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.066;QD=15.67;ReadPosRankSum=0.378;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKDD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506596    GT:AD:DP:GQ:PL    0/1:49,59:108:99:1723,0,1531
5    74921883    rs17739580    C    T    755.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.371;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.825;QD=15.74;ReadPosRankSum=0.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKDD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506596    GT:AD:DP:GQ:PL    0/1:24,24:48:99:786,0,600
5    74921896    rs7717505    G    A    571.85    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=41;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.456;QD=13.95;ReadPosRankSum=0.039;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKDD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506596    GT:AD:DP:GQ:PL    0/1:20,21:41:99:602,0,644
5    74951901    rs7717355    G    A    1458.34    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.377;QD=18.7;ReadPosRankSum=-1.425;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKDD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506596    GT:AD:DP:GQ:PL    0/1:33,45:78:99:1488,0,929
5    74962768    rs6453139    C    T    340.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=28;Dels=0.0;FS=3.174;HRun=2;HaplotypeScore=1.6828;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=12.15;ReadPosRankSum=-1.189;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKDD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506596    GT:AD:DP:GQ:PL    0/1:14,14:28:99:370,0,394
5    74965122    rs34358    G    A    517.48    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.062;DB;DP=45;Dels=0.0;FS=4.288;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=3.049;QD=11.5;ReadPosRankSum=1.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380475    GT:AD:DP:GQ:PL    0/1:25,20:45:99:547,0,830
5    74973879    rs2303647    C    T    225.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=18.77;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380475    GT:AD:DP:GQ:PL    0/1:4,8:12:99:255,0,121
5    74973949    rs3815894    C    T    76.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=12.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380475    GT:AD:DP:GQ:PL    0/1:2,4:6:67.83:107,0,68
5    74986481    rs4704230    T    C    147.24    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.36;ReadPosRankSum=1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357564    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,132
5    74988369    rs888789    A    G    1437.47    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.449;QD=14.23;ReadPosRankSum=-2.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504862    GT:AD:DP:GQ:PL    0/1:54,47:101:99:1467,0,1767
5    74990779    rs2307114    A    C    97.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.78;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380475    GT:AD:DP:GQ:PL    0/1:6,4:10:99:128,0,215
5    75001582    rs17672542    A    G    766.23    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.414;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-1.808;QD=14.19;ReadPosRankSum=-0.266;SNPEFF_AMINO_ACID_CHANGE=I60T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75001529_75001612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446329    GT:AD:DP:GQ:PL    0/1:25,29:54:99:796,0,809
5    75003678    rs2307111    T    C    2210.95    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.873;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.87;MQ0=0;MQRankSum=-0.677;QD=16.02;ReadPosRankSum=0.712;SNPEFF_AMINO_ACID_CHANGE=H11R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75003562_75003700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446329    GT:AD:DP:GQ:PL    0/1:58,80:138:99:2241,0,1781
5    75427518    rs1423099    C    T    943    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.72;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_5_75427475_75428155;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322285    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:976,72,0
5    75427935    rs10070440    G    A    1312.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=R120;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75427475_75428155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322285    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1345,102,0
5    75537937    rs4094349    G    C    573.24    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=0.61;DB;DP=63;Dels=0.0;FS=1.053;HRun=1;HaplotypeScore=0.0;MQ=49.34;MQ0=1;MQRankSum=1.483;QD=9.1;ReadPosRankSum=1.483;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322285    GT:AD:DP:GQ:PL    0/1:43,20:63:99:603,0,1132
5    75580687    rs2358712    A    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322285    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
5    75591710    rs2270927    C    G    1179.89    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=68;Dels=0.0;FS=3.299;HRun=0;HaplotypeScore=2.3336;MQ=60.0;MQ0=0;MQRankSum=0.397;QD=17.35;ReadPosRankSum=-0.422;SNPEFF_AMINO_ACID_CHANGE=T482S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75591603_75591767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322285    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1210,0,943
5    75594457    rs34664047    A    T    135.49    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.32;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506257    GT:AD:DP:GQ:PL    0/1:6,5:11:99:165,0,220
5    75594743    rs31244    G    A    596.56    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.465;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.598;QD=14.55;ReadPosRankSum=0.921;SNPEFF_AMINO_ACID_CHANGE=D543N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75594619_75594752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322285    GT:AD:DP:GQ:PL    0/1:20,21:41:99:627,0,611
5    75597494    rs246816    A    G    304.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322285    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:337,27,0
5    75698761    rs13357820    G    T    174.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.13;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
5    75884734    rs10036913    G    A    782.51    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.507;DB;DP=47;Dels=0.0;FS=9.373;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.267;QD=16.65;ReadPosRankSum=0.97;SNPEFF_AMINO_ACID_CHANGE=L104;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75884731_75884798;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505766    GT:AD:DP:GQ:PL    0/1:22,25:47:99:812,0,715
5    75886168    rs2270907    A    G    1265.55    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.363;DB;DP=76;Dels=0.0;FS=1.391;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.351;QD=16.65;ReadPosRankSum=-0.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    0/1:33,43:76:99:1296,0,1059
5    75888788    rs3736394    G    A    1409.43    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=3.011;DB;DP=119;Dels=0.01;FS=2.856;HRun=0;HaplotypeScore=6.861;MQ=59.42;MQ0=0;MQRankSum=-0.356;QD=11.75;ReadPosRankSum=-0.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    0/1:72,47:119:99:1439,0,2092
5    75918738    rs924592    C    T    128.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F2RL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296641    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
5    75923141    rs2455221    G    A    666.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=56.92;MQ0=0;QD=28.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:1,22:23:57.16:700,57,0
5    75923285    rs2431351    C    T    3686.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=A474;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75923235_75923325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505766    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3686,268,0
5    75923294    rs2431352    T    G    3703.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.16;MQ0=0;QD=32.49;SNPEFF_AMINO_ACID_CHANGE=D477E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75923235_75923325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505766    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3704,274,0
5    75923307    rs2909888    A    G    3568.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4585;MQ=58.3;MQ0=0;QD=32.44;SNPEFF_AMINO_ACID_CHANGE=K482E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75923235_75923325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000505766    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3568,271,0
5    75923393    rs2431353    T    C    1476.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.63;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504254    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1510,123,0
5    75923459    rs2455222    G    A    1097.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504254    GT:AD:DP:GQ:PL    1/1:0,31:31:90.25:1130,90,0
5    75923494    rs2431354    C    T    525.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504254    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:558,42,0
5    75927509    rs429071    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504254    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    75927595    rs431160    C    G    320.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504254    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:353,27,0
5    75927938    rs441157    A    T    353.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504254    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:387,30,0
5    75932869    rs2910819    C    T    1856.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=4.546;MQ=59.56;MQ0=0;QD=35.03;SNPEFF_AMINO_ACID_CHANGE=T148M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75932866_75932929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509074    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1890,141,0
5    75932965    rs2455230    G    C    2026.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=L182F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75932859_75933001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396234    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2059,147,0
5    75933097    rs2937415    C    T    497.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509074    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:530,39,0
5    75936944    rs457821    G    A    1394.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=34.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509074    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1427,108,0
5    75948474    rs2252231    T    C    133.51    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.742;QD=16.69;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    0/1:1,7:8:23.19:163,0,23
5    75948650    rs2431363    A    G    1478.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.143;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8661;MQ=58.11;MQ0=0;MQRankSum=-0.037;QD=31.46;ReadPosRankSum=1.511;SNPEFF_AMINO_ACID_CHANGE=I220V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75948575_75948658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396234    GT:AD:DP:GQ:PL    1/1:1,46:47:79.58:1511,80,0
5    75948685    rs2431362    G    A    1116.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,34:34:87.27:1149,87,0
5    75948799    rs2455215    T    C    171.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
5    75949876    rs466393    T    C    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
5    75950193    rs462307    A    G    498.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:532,42,0
5    75950707    rs465731    G    A    576.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:610,45,0
5    75950997    rs459846    G    A    167.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
5    75954096    rs2287930    G    A    133.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
5    75954537    rs4704347    C    T    863.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:896,66,0
5    75954577    rs4704348    A    G    561.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:595,45,0
5    75960818    rs11449450    T    TA    105.12    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=3.11;DB;DP=17;FS=2.884;HRun=5;HaplotypeScore=118.2651;IndelType=I;MQ=58.63;MQ0=0;MQRankSum=-0.474;QD=6.18;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514579    GT:AD:DP:GQ:PL    0/1:12,5:17:99:144,0,336
5    75960865    rs253093    T    C    1098.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=37.87;SNPEFF_AMINO_ACID_CHANGE=H344;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_75960851_75961000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396234    GT:AD:DP:GQ:PL    1/1:0,29:29:81.27:1131,81,0
5    75964702    rs3764935    G    A    1333.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514350    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1366,99,0
5    75967862    rs35919076    A    G    78.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514001    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:111,9,0
5    75969747    rs41271836    A    G    1628.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504558    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1661,123,0
5    75972951    rs2303162    C    T    256.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.442;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=14.26;ReadPosRankSum=-0.971;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504558    GT:AD:DP:GQ:PL    0/1:9,9:18:99:287,0,246
5    76002914    rs7717826    C    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274364    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
5    76012745    rs2227819    C    T    163.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505600    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
5    76028124    rs168753    A    T    500.95    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.73;DB;DP=38;Dels=0.0;FS=6.039;HRun=7;HaplotypeScore=0.9665;MQ=58.9;MQ0=0;MQRankSum=-0.695;QD=13.18;ReadPosRankSum=-0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319211    GT:AD:DP:GQ:PL    0/1:16,22:38:99:531,0,531
5    76114963    rs1529505    C    T    86.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F2RL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514165    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
5    76128521    rs616235    G    A    1488.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_AMINO_ACID_CHANGE=S30N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_76128515_76131140;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F2RL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296677    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1522,111,0
5    76129053    rs631465    T    C    1344.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=I207;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_76128515_76131140;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F2RL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296677    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1378,108,0
5    76171252    rs1320308    A    C    282.75    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.428;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.132;QD=7.85;ReadPosRankSum=-0.461;SNPEFF_AMINO_ACID_CHANGE=E23A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_76171129_76171325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100Z;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317593    GT:AD:DP:GQ:PL    0/1:23,13:36:99:313,0,798
5    76173727    rs1320307    G    C    138    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=11.5;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317593    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,218
5    76249062    rs41272246    C    A    257.36    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.0;QD=18.38;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274368    GT:AD:DP:GQ:PL    0/1:5,9:14:99:287,0,128
5    76249536    rs1715771    C    G    35.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.91;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274368    GT:AD:DP:GQ:PL    0/1:1,2:3:16.66:66,0,17
5    76259350    rs7728378    T    C    546.18    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.181;DB;DP=47;Dels=0.0;FS=5.778;HRun=4;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=11.62;ReadPosRankSum=0.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506501    GT:AD:DP:GQ:PL    0/1:28,19:47:99:576,0,824
5    76326885    rs2278241    G    A    199.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.71;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.91;QD=11.09;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGGF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312916    GT:AD:DP:GQ:PL    0/1:10,8:18:99:230,0,319
5    76335623    rs35359101    A    C    159.62    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=14.51;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGGF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503538    GT:AD:DP:GQ:PL    0/1:5,6:11:99:190,0,170
5    76351308    rs74848595    C    A    297.68    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.292;QD=9.92;ReadPosRankSum=-0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGGF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312916    GT:AD:DP:GQ:PL    0/1:18,12:30:99:328,0,561
5    76357700    rs116177220    G    A    899.13    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.839;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=1.638;QD=18.35;ReadPosRankSum=-0.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGGF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312916    GT:AD:DP:GQ:PL    0/1:22,27:49:99:929,0,742
5    76359024    rs34400049    C    A    1882.60    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.176;DB;DP=151;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=1.7128;MQ=59.42;MQ0=0;MQRankSum=-0.006;QD=12.47;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=P698T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_76358877_76361059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGGF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312916    GT:AD:DP:GQ:PL    0/1:87,64:151:99:1913,0,2777
5    76621612    rs4133658    A    T    647.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:680,51,0
5    76621674    rs3797462    G    A    122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
5    76624638    .    A    G    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:70,0,67
5    76627436    rs9687030    A    G    359.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502945    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:392,30,0
5    76633297    rs7717046    G    A    82.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
5    76640845    rs11742730    C    G    839.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:873,63,0
5    76645529    rs2306343    G    A    334.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
5    76703374    rs3101866    A    G    449.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:483,36,0
5    76704849    rs186753    T    C    644.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=P402;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_76704718_76704882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346042    GT:AD:DP:GQ:PL    1/1:0,21:21:54.14:677,54,0
5    76708987    rs335614    A    G    2757.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=E491;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_76708936_76709134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346042    GT:AD:DP:GQ:PL    1/1:0,80:81:99:2790,208,0
5    76709249    rs335615    A    T    34.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=6.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    1/1:0,5:5:6.01:66,6,0
5    76709268    rs335616    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264917    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    76926578    rs13357072    T    C    213.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.68;SNPEFF_AMINO_ACID_CHANGE=K163;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_76924538_76926619;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306422    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:246,18,0
5    76926651    rs62362480    A    C    219.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306422    GT:AD:DP:GQ:PL    1/1:0,9:9:24.03:252,24,0
5    77004275    rs352548    A    T    125.34    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=13.93;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306388    GT:AD:DP:GQ:PL    0/1:4,5:9:99:155,0,140
5    77425028    rs6453373    A    T    1737.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=V489E;SNPEFF_CODON_CHANGE=gTa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_77424945_77425131;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535667    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1770,132,0
5    77523092    rs7714159    G    A    284.55    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=17.78;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255194    GT:AD:DP:GQ:PL    0/1:7,9:16:99:315,0,229
5    77524068    rs5868908    T    TA    84.92    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=15;FS=4.472;HRun=9;HaplotypeScore=68.9055;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=5.66;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255194    GT:AD:DP:GQ:PL    0/1:10,5:15:99:124,0,191
5    77524091    rs4499809    A    G    140.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=15;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=9.34;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255194    GT:AD:DP:GQ:PL    0/1:9,6:15:99:170,0,311
5    77563263    rs10065892    G    A    189.88    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=27.13;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255194    GT:AD:DP:GQ:PL    0/1:1,6:7:16.73:220,0,17
5    77656771    rs4634329    T    C    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=SCAMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339292    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    77745853    rs113934564    C    CA    7982.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=184;FS=0.0;HRun=1;HaplotypeScore=447.8368;IndelType=I;MQ=60.16;MQ0=0;QD=43.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=SCAMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320280    GT:AD:DP:GQ:PL    1/1:5,179:184:99:7983,539,0
5    77755035    rs6453391    T    C    1203.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=33.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=SCAMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320280    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1236,102,0
5    77755343    rs13155648    A    G    314.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=SCAMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320280    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:347,27,0
5    77784542    rs11740697    C    T    242.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=34.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHFPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502722    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:276,21,0
5    77784738    rs2241566    A    G    3307.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.52;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=N223;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_77781040_77784976;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHFPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380345    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3308,247,0
5    78111674    rs34152768    A    G    103.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=14.84;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,104
5    78135201    rs25413    C    T    560.84    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=46;Dels=0.0;FS=2.555;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.143;QD=12.19;ReadPosRankSum=-0.979;SNPEFF_AMINO_ACID_CHANGE=P397;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_78135179_78135249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:24,22:46:99:591,0,679
5    78135276    rs25415    T    G    501.57    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.456;DB;DP=33;Dels=0.0;FS=3.552;HRun=0;HaplotypeScore=0.9998;MQ=59.3;MQ0=0;MQRankSum=-0.496;QD=15.2;ReadPosRankSum=-0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:14,19:33:99:532,0,373
5    78181269    rs79555942    G    A    58.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.3;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:4,3:7:88.11:88,0,146
5    78181477    rs1065757    C    T    630.67    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.373;DB;DP=49;Dels=0.0;FS=12.627;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.16;QD=12.87;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=V358M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_78181407_78181650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:24,25:49:99:661,0,748
5    78251347    rs6870443    A    G    484.17    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.119;DB;DP=28;Dels=0.0;FS=1.737;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.921;QD=17.29;ReadPosRankSum=1.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:13,15:28:99:514,0,394
5    78264684    rs61216659    C    G    75.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.54;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,108
5    78265041    rs3733895    A    G    850.02    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.373;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.16;QD=17.0;ReadPosRankSum=-1.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:21,29:50:99:880,0,714
5    78265092    rs918581    C    T    292.81    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.456;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=-0.123;QD=10.84;ReadPosRankSum=-1.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:16,11:27:99:323,0,557
5    78265096    rs918580    C    T    307.47    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.525;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.361;QD=12.3;ReadPosRankSum=-1.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264914    GT:AD:DP:GQ:PL    0/1:15,10:25:99:337,0,526
5    78340062    rs248384    T    C    3186.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255189    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3220,247,0
5    78340257    rs248385    C    G    1865.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=32.17;SNPEFF_AMINO_ACID_CHANGE=L127;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_78340127_78340375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMGDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523732    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1899,144,0
5    78340286    rs532964    A    G    1775.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=36.98;SNPEFF_AMINO_ACID_CHANGE=S118P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_78340127_78340375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMGDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523732    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1808,138,0
5    78340411    rs531982    T    C    611.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=29.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255189    GT:AD:DP:GQ:PL    1/1:0,21:21:48.14:645,48,0
5    78340517    rs2249096    A    T    386.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255189    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:420,33,0
5    78351636    rs2253262    A    C    676.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_AMINO_ACID_CHANGE=G124;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_78351633_78351731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMGDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255189    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:710,54,0
5    78373431    rs682985    C    T    2206.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.02;MQ0=0;QD=37.4;SNPEFF_AMINO_ACID_CHANGE=D54;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_78373303_78373435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHMT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255192    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2240,166,0
5    78411822    rs619100    C    G    75.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518707    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
5    78416416    rs567754    C    T    410.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520335    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:443,33,0
5    78421780    rs694290    G    A    292.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274353    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:326,27,0
5    78426650    rs4421087    G    A    629.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521279    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:662,48,0
5    78533584    rs72764988    G    C    439.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282259    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:473,36,0
5    78742858    rs12516663    T    C    555.08    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.285;QD=17.35;ReadPosRankSum=0.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282260    GT:AD:DP:GQ:PL    0/1:14,18:32:99:585,0,423
5    78742980    rs6862358    G    A    672.49    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.139;QD=18.18;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282260    GT:AD:DP:GQ:PL    0/1:15,22:37:99:702,0,486
5    78915662    rs72766791    G    A    459.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.504;DB;DP=28;Dels=0.0;FS=2.251;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=16.43;ReadPosRankSum=-0.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PAPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508620    GT:AD:DP:GQ:PL    0/1:14,14:28:99:490,0,511
5    78915992    rs3828602    A    C    55.49    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=5.04;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PAPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508620    GT:AD:DP:GQ:PL    0/1:8,3:11:85.48:85,0,268
5    79084949    rs2302979    G    C    2128.95    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.446;DB;DP=159;Dels=0.0;FS=5.059;HRun=0;HaplotypeScore=3.8925;MQ=59.62;MQ0=0;MQRankSum=1.838;QD=13.39;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMYA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446378    GT:AD:DP:GQ:PL    0/1:83,76:159:99:2159,0,2375
5    79086649    rs259096    G    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMYA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446378    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    79351411    rs426623    T    C    748.54    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.3637;MQ=58.84;MQ0=0;QD=37.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:782,57,0
5    79351416    rs67622699    GA    G    786.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=4;HaplotypeScore=141.6335;IndelType=D;MQ=59.03;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    1/1:1,23:24:69.21:828,69,0
5    79351544    rs412379    G    A    5902.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.991;MQ=59.23;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    1/1:0,174:175:99:5902,442,0
5    79351735    rs423906    C    T    1047.23    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.918;DB;DP=62;Dels=0.0;FS=6.384;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.153;QD=16.89;ReadPosRankSum=0.459;SNPEFF_AMINO_ACID_CHANGE=S140;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79351608_79351855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    0/1:26,36:62:99:1077,0,843
5    79351852    rs438042    A    T    665.97    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=27.75;SNPEFF_AMINO_ACID_CHANGE=P179;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79351608_79351855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    1/1:0,24:24:57.09:699,57,0
5    79351859    rs405482    G    A    292.74    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.47;MQ0=0;QD=16.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510218    GT:AD:DP:GQ:PL    1/1:0,18:18:38.94:326,39,0
5    79351860    rs447875    G    A    270.08    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.93;MQ0=0;QD=15.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510218    GT:AD:DP:GQ:PL    1/1:0,17:17:35.95:303,36,0
5    79354147    rs368936    C    T    52.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510218    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
5    79354647    rs432267    C    G    884.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510218    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:917,66,0
5    79354702    rs411943    C    T    456.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510218    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:490,36,0
5    79354728    rs434409    C    T    32.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.71;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510218    GT:AD:DP:GQ:PL    0/1:5,2:7:62.93:63,0,158
5    79355192    rs2434302    T    A    753.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.58;MQ0=0;QD=27.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510218    GT:AD:DP:GQ:PL    1/1:0,27:27:60.17:786,60,0
5    79355471    rs401302    C    T    400.21    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.276;DB;DP=28;Dels=0.0;FS=7.627;HRun=2;HaplotypeScore=1.5717;MQ=60.0;MQ0=0;MQRankSum=1.52;QD=14.29;ReadPosRankSum=-1.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510218    GT:AD:DP:GQ:PL    0/1:13,15:28:99:430,0,449
5    79366249    rs256438    T    G    267.64    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.981;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.6651;MQ=58.64;MQ0=0;MQRankSum=0.02;QD=8.63;ReadPosRankSum=-0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    0/1:19,12:31:99:298,0,648
5    79368016    rs256437    T    C    1748.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1782,138,0
5    79368048    rs3217460    TAGA    T    3721.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.0;HRun=0;HaplotypeScore=489.9327;IndelType=D;MQ=54.27;MQ0=0;QD=46.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    1/1:2,78:80:99:3722,235,0
5    79368392    rs12110039    A    G    242.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=16.14;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    0/1:6,9:15:99:272,0,198
5    79373803    rs2288394    C    T    589.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515510    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:623,54,0
5    79374607    rs5869017    AT    A    144.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=3;HaplotypeScore=22.5909;IndelType=D;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515510    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
5    79375724    rs2288395    G    C    708.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515510    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:742,54,0
5    79378070    rs2918422    C    G    281.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
5    79378528    rs2434300    A    G    170.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
5    79378783    rs11273406    TGCGGGGCGTCCTGG    T    842.09    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=174.0307;IndelType=D;MQ=48.11;MQ0=0;MQRankSum=-0.817;QD=64.78;ReadPosRankSum=1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=THBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350881    GT:AD:DP:GQ:PL    0/1:5,8:13:99:881,0,757
5    79473059    rs76827953    C    CT    1848.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=2;HaplotypeScore=91.6816;IndelType=I;MQ=60.07;MQ0=0;QD=40.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513907    GT:AD:DP:GQ:PL    1/1:1,45:45:99:1890,132,0
5    79595396    rs4704659    T    C    194.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.799;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=13.92;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTC-512J14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507366    GT:AD:DP:GQ:PL    0/1:7,7:14:99:225,0,246
5    79595404    rs33987570    CA    C    170.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=18;FS=0.0;HRun=8;HaplotypeScore=71.045;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=9.48;ReadPosRankSum=-1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTC-512J14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507366    GT:AD:DP:GQ:PL    0/1:9,9:18:99:210,0,239
5    79596333    rs28401747    G    A    421.53    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.87;DB;DP=32;Dels=0.0;FS=2.393;HRun=1;HaplotypeScore=0.0;MQ=56.95;MQ0=0;MQRankSum=-0.793;QD=13.17;ReadPosRankSum=-1.473;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTC-512J14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507366    GT:AD:DP:GQ:PL    0/1:17,15:32:99:452,0,596
5    79616083    rs1862136    G    C    6897.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=229;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.416;MQ=59.8;MQ0=0;QD=30.12;SNPEFF_AMINO_ACID_CHANGE=V17L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79615790_79617661;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296739    GT:AD:DP:GQ:PL    1/1:0,228:229:99:6898,512,0
5    79616544    rs2047589    G    A    768.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.411;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8633;MQ=48.99;MQ0=1;MQRankSum=-0.781;QD=11.64;ReadPosRankSum=-0.138;SNPEFF_AMINO_ACID_CHANGE=M170I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79615790_79617661;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296739    GT:AD:DP:GQ:PL    0/1:33,33:66:99:799,0,943
5    79617357    rs16876315    T    C    654.09    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=3.021;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.866;QD=21.1;ReadPosRankSum=0.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511881    GT:AD:DP:GQ:PL    0/1:10,21:31:99:684,0,294
5    79733079    rs2544600    T    C    1702.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.23;SNPEFF_AMINO_ACID_CHANGE=I192T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79732575_79734826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338008    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1736,129,0
5    79734297    rs259028    T    C    3119.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=35.45;SNPEFF_AMINO_ACID_CHANGE=I598T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79732575_79734826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338008    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3153,232,0
5    79734409    rs259029    G    A    2638.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.09;MQ0=0;QD=34.71;SNPEFF_AMINO_ACID_CHANGE=S635;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79732575_79734826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338008    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2671,196,0
5    79735858    rs168939    A    G    3025.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.476;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9995;MQ=60.0;MQ0=0;MQRankSum=0.78;QD=32.88;ReadPosRankSum=0.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509562    GT:AD:DP:GQ:PL    1/1:1,91:92:99:3058,190,0
5    79738779    rs259032    G    A    287.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510995    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
5    79741018    rs259034    T    A    680.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510995    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:713,54,0
5    79743821    rs2251759    T    A    1129.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338008    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1162,99,0
5    79745469    rs249038    A    G    2905.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=31.93;SNPEFF_AMINO_ACID_CHANGE=S1055G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79745410_79745532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338008    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2938,229,0
5    79747291    rs249039    A    G    664.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509558    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:698,51,0
5    79755038    rs249015    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338008    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    79768392    rs33928816    TA    T    114.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=24.2339;IndelType=D;MQ=60.0;MQ0=0;QD=19.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338008    GT:AD:DP:GQ:PL    1/1:0,6:6:18:156,18,0
5    79773028    rs166062    T    G    703.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338008    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:737,60,0
5    79815658    rs369998    T    C    1797.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=58.64;MQ0=0;MQRankSum=-0.217;QD=37.44;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=I155T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79815512_79815729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM151B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282226    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1830,135,0
5    79855372    rs32857    A    G    2267.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=59.07;MQ0=0;QD=30.24;SNPEFF_AMINO_ACID_CHANGE=L156S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79852574_79855861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD34B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338682    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2301,178,0
5    79855876    rs187262    T    C    580.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD34B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338682    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:613,51,0
5    79924791    rs7387    T    A    162.99    MQFilter40    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.26;MQ0=4;MQRankSum=0.566;QD=10.87;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508282    GT:AD:DP:GQ:PL    0/1:7,8:15:84.98:193,0,85
5    79933576    rs1643661    C    T    91.09    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.45;MQ0=0;MQRankSum=2.546;QD=7.01;ReadPosRankSum=-1.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439211    GT:AD:DP:GQ:PL    0/1:9,4:13:99:121,0,334
5    79933653    rs34545755    T    TGAAA    2684.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.86;DB;DP=70;FS=2.685;HRun=0;HaplotypeScore=265.2602;IndelType=I;MQ=56.3;MQ0=0;MQRankSum=0.241;QD=38.35;ReadPosRankSum=0.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439211    GT:AD:DP:GQ:PL    0/1:35,32:70:99:2724,0,1451
5    79933933    rs1677697    T    C    309.01    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=16;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.163;QD=19.31;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439211    GT:AD:DP:GQ:PL    0/1:6,10:16:99:339,0,198
5    79950389    rs151182735    GC    G    394.98    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=4.219;DB;DP=34;FS=0.0;HRun=6;HaplotypeScore=187.6053;IndelType=D;MQ=50.25;MQ0=0;MQRankSum=0.173;QD=11.62;ReadPosRankSum=-0.567;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504396    GT:AD:DP:GQ:PL    0/1:18,16:34:99:434,0,353
5    79950403    rs10168    C    T    404.57    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.937;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.36;MQ0=0;MQRankSum=0.334;QD=18.39;ReadPosRankSum=-1.269;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_79950223_79950802;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439211    GT:AD:DP:GQ:PL    0/1:9,13:22:99:435,0,254
5    79950781    rs1650697    A    G    124.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.09;MQ0=0;QD=24.87;SNPEFF_AMINO_ACID_CHANGE=I70V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_79950739_79950783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535995    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
5    79952034    rs380691    A    G    170.71    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.52;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:4,7:11:99:201,0,128
5    79952154    rs1382539    G    A    911.39    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.824;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.294;QD=13.02;ReadPosRankSum=0.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:33,37:70:99:941,0,1031
5    79952165    rs1382540    C    G    1112.15    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.015;DB;DP=77;Dels=0.0;FS=3.408;HRun=1;HaplotypeScore=1.9436;MQ=59.46;MQ0=0;MQRankSum=-2.289;QD=14.44;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1142,0,1110
5    79952390    rs1643639    T    C    231.86    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.601;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.28;QD=12.2;ReadPosRankSum=1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512531    GT:AD:DP:GQ:PL    0/1:11,8:19:99:262,0,364
5    79952426    rs1650694    G    C    95.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=9.6;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512531    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,206
5    79960849    rs1650670    A    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:2,2:4:68.30:72,0,68
5    79960955    rs1382543    G    A    349.12    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9575;MQ=60.0;MQ0=0;MQRankSum=0.024;QD=12.93;ReadPosRankSum=-0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:14,13:27:99:379,0,493
5    79961241    rs1824837    G    A    94.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.922;QD=11.79;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:4,4:8:99:124,0,140
5    79961288    rs6151612    G    C    93.39    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=0.731;QD=18.68;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:123,0,26
5    79961289    rs6151613    G    A    103.07    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.731;QD=20.61;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:1,4:5:27.19:133,0,27
5    79961312    rs1824838    C    A    33.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=8.29;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:63,0,70
5    79965775    rs1650650    G    T    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=5.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,128
5    79966197    rs1677649    G    A    194.20    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.815;QD=10.79;ReadPosRankSum=0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:11,7:18:99:224,0,385
5    79967954    rs1677652    G    C    105.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=10.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,219
5    79968258    rs1650648    T    A    906.48    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.658;DB;DP=64;Dels=0.0;FS=3.69;HRun=1;HaplotypeScore=1.9532;MQ=58.98;MQ0=0;MQRankSum=0.631;QD=14.16;ReadPosRankSum=0.484;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:33,31:64:99:936,0,1082
5    79968271    rs1677653    A    G    686.78    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=-1.63;QD=13.74;ReadPosRankSum=0.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:26,24:50:99:717,0,901
5    79968330    rs1677654    G    A    40.56    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.693;QD=2.39;ReadPosRankSum=-0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:14,3:17:70.55:71,0,527
5    79968496    rs1677655    C    T    334.36    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.196;QD=11.53;ReadPosRankSum=0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:14,15:29:99:364,0,497
5    79974570    rs836808    G    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:73,0,25
5    79974646    rs836807    T    C    792.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:825,63,0
5    79974983    rs836806    T    C    768.50    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.651;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.524;QD=15.37;ReadPosRankSum=2.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:26,24:50:99:798,0,934
5    80021168    rs32951    A    C    150.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=15.01;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:4,6:10:99:180,0,139
5    80021193    rs245016    C    T    509.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:543,42,0
5    80021445    rs32952    A    C    167.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.098;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=10.48;ReadPosRankSum=-0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:8,8:16:99:198,0,281
5    80149981    rs184967    A    G    636.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=Q940R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_80149949_80150135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535995    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:670,54,0
5    80160596    rs3991216    AAATG    A    717.83    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=3.983;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=181.4072;IndelType=D;MQ=54.33;MQ0=0;MQRankSum=-0.283;QD=18.41;ReadPosRankSum=0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:24,14:39:99:757,0,1429
5    80160975    rs6151919    C    G    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.65;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265081    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,71
5    80168937    rs26279    G    A    525.45    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=10.1;ReadPosRankSum=-1.25;SNPEFF_AMINO_ACID_CHANGE=A1036T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_80168935_80169106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535995    GT:AD:DP:GQ:PL    0/1:31,21:52:99:555,0,934
5    80366094    rs26909    T    C    34.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.74;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    0/1:4,2:6:64.40:64,0,141
5    80375793    rs190408    A    G    130.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:163,12,0
5    80376142    rs27650    T    C    460.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:494,39,0
5    80388823    rs34991019    T    TA    978.86    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.837;DB;DP=48;FS=0.0;HRun=1;HaplotypeScore=104.7715;IndelType=I;MQ=60.29;MQ0=0;MQRankSum=1.023;QD=20.39;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502677    GT:AD:DP:GQ:PL    0/1:22,26:48:99:1018,0,605
5    80390318    rs425847    G    A    101.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.52;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    0/1:3,4:7:92.38:132,0,92
5    80475866    rs7722620    G    A    320.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.388;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.204;QD=16.02;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    0/1:10,10:20:99:350,0,255
5    80478772    rs13187728    T    C    71.32    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.83;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:101,0,27
5    80479164    rs7701594    T    C    486.80    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.258;QD=11.32;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    0/1:25,18:43:99:517,0,823
5    80502736    rs6453542    C    G    275.17    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.335;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.39;MQ0=0;MQRankSum=0.016;QD=7.24;ReadPosRankSum=-0.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    0/1:26,12:38:99:305,0,861
5    80502903    rs17228156    T    C    103.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=17.32;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265080    GT:AD:DP:GQ:PL    0/1:2,4:6:64.94:134,0,65
5    80546759    rs139063325    A    AAC    191.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=37.7986;IndelType=I;MQ=55.67;MQ0=1;MQRankSum=0.572;QD=15.96;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254035    GT:AD:DP:GQ:PL    0/1:3,9:10:16.88:231,0,17
5    80604880    .    A    AT    458.81    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.626;DP=28;FS=3.16;HRun=1;HaplotypeScore=62.7891;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.414;QD=16.39;ReadPosRankSum=0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZCCHC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254037    GT:AD:DP:GQ:PL    0/1:16,12:28:99:498,0,510
5    80626497    rs62621795    G    C    306.26    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=17;Dels=0.0;FS=9.971;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.439;QD=18.02;ReadPosRankSum=1.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307624    GT:AD:DP:GQ:PL    0/1:7,10:17:99:336,0,222
5    80631511    rs6452399    G    A    1237.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307624    GT:AD:DP:GQ:PL    1/1:0,35:35:96.30:1270,96,0
5    80631855    rs36123812    CAT    C    203.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=20.2863;IndelType=D;MQ=60.0;MQ0=0;QD=40.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307624    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:245,15,0
5    80640919    rs147835552    TGCACACCGCTGCCACCTCCTC    T    421.30    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=258.0722;IndelType=D;MQ=60.92;MQ0=0;MQRankSum=1.331;QD=28.09;ReadPosRankSum=-1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307624    GT:AD:DP:GQ:PL    0/1:8,7:15:99:460,0,1246
5    80655709    rs13163821    T    C    1558.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307624    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1591,120,0
5    80716163    rs10746    T    G    115.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=28.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504136    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
5    80724572    rs3764985    G    A    324.94    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.588;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.718;QD=21.66;ReadPosRankSum=1.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320672    GT:AD:DP:GQ:PL    0/1:4,11:15:99:355,0,123
5    81548653    rs1560207    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513634    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    81571846    rs226201    G    A    457.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.189;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.32;MQ0=0;MQRankSum=-0.124;QD=15.25;ReadPosRankSum=1.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503605    GT:AD:DP:GQ:PL    0/1:15,15:30:99:487,0,429
5    81572184    rs226200    G    C    1286.08    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=117;Dels=0.0;FS=9.295;HRun=0;HaplotypeScore=0.6651;MQ=58.27;MQ0=0;MQRankSum=-0.463;QD=10.99;ReadPosRankSum=-1.551;SNPEFF_AMINO_ACID_CHANGE=F106L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_81571697_81572337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507980    GT:AD:DP:GQ:PL    0/1:73,44:117:99:1316,0,2328
5    81572464    rs226199    G    C    177.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.968;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=12.65;ReadPosRankSum=-0.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508814    GT:AD:DP:GQ:PL    0/1:8,6:14:99:207,0,274
5    81574182    rs6880209    C    T    75.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=11;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.881;QD=6.86;ReadPosRankSum=-0.361;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_81574139_81574396;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296674    GT:AD:DP:GQ:PL    0/1:6,4:11:99:105,0,129
5    82353083    rs7724935    C    T    125.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=12.51;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM167A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502346    GT:AD:DP:GQ:PL    0/1:4,6:10:99:155,0,133
5    82353087    rs7707143    T    C    125.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=12.51;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM167A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502346    GT:AD:DP:GQ:PL    0/1:4,6:10:99:155,0,139
5    82360783    rs2306336    T    C    892.32    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.489;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6671;MQ=59.59;MQ0=0;MQRankSum=-0.074;QD=15.93;ReadPosRankSum=-1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM167A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502346    GT:AD:DP:GQ:PL    0/1:26,30:56:99:922,0,842
5    82407098    rs1478482    G    A    463.62    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.399;QD=21.07;ReadPosRankSum=1.672;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282268    GT:AD:DP:GQ:PL    0/1:8,14:22:99:494,0,268
5    82407105    rs1478481    A    G    486.81    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.113;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=58.84;MQ0=0;MQRankSum=1.443;QD=24.34;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282268    GT:AD:DP:GQ:PL    0/1:6,14:20:99:517,0,192
5    82499307    rs2662238    G    A    487.40    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.743;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.018;QD=14.34;ReadPosRankSum=-1.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282268    GT:AD:DP:GQ:PL    0/1:16,18:34:99:517,0,575
5    82786194    rs12332199    T    C    502.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.686;DB;DP=38;Dels=0.0;FS=1.273;HRun=1;HaplotypeScore=1.8332;MQ=60.0;MQ0=0;MQRankSum=-2.477;QD=13.22;ReadPosRankSum=0.258;SNPEFF_AMINO_ACID_CHANGE=T116;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82785917_82786291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265077    GT:AD:DP:GQ:PL    0/1:19,19:38:99:532,0,614
5    82789647    rs4470745    A    G    634.01    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=50;Dels=0.0;FS=2.509;HRun=2;HaplotypeScore=3.506;MQ=59.07;MQ0=0;MQRankSum=-2.55;QD=12.68;ReadPosRankSum=1.15;SNPEFF_AMINO_ACID_CHANGE=V167;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82789623_82789750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512590    GT:AD:DP:GQ:PL    0/1:26,24:50:99:664,0,738
5    82815408    rs2287926    G    A    824.43    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.019;DB;DP=63;Dels=0.0;FS=2.155;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=0.31;QD=13.09;ReadPosRankSum=-0.861;SNPEFF_AMINO_ACID_CHANGE=G380D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82815168_82818128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000512590    GT:AD:DP:GQ:PL    0/1:33,29:63:99:854,0,1046
5    82833145    rs2548541    G    A    1012.03    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=93;Dels=0.0;FS=1.715;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.083;QD=10.88;ReadPosRankSum=-1.656;SNPEFF_AMINO_ACID_CHANGE=Q1441;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82832826_82838087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265077    GT:AD:DP:GQ:PL    0/1:56,37:93:99:1042,0,1733
5    82833369    rs309559    A    G    740.96    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=14.53;ReadPosRankSum=-0.764;SNPEFF_AMINO_ACID_CHANGE=K1516R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82832826_82838087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265077    GT:AD:DP:GQ:PL    0/1:24,27:51:99:771,0,790
5    82834630    rs309557    T    C    832.15    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DB;DP=62;Dels=0.0;FS=12.081;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.499;QD=13.21;ReadPosRankSum=0.08;SNPEFF_AMINO_ACID_CHANGE=G1936;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82832826_82838087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265077    GT:AD:DP:GQ:PL    0/1:28,33:62:99:862,0,887
5    82835545    rs160279    A    G    1066.03    PASS    AB=0.262;AC=1;AF=0.50;AN=2;BaseQRankSum=3.175;DB;DP=42;Dels=0.0;FS=1.446;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=25.38;ReadPosRankSum=0.544;SNPEFF_AMINO_ACID_CHANGE=R1254;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82832826_82838087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343200    GT:AD:DP:GQ:PL    0/1:11,31:42:99:1096,0,311
5    82835724    rs160278    T    A    746.38    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.54;DB;DP=46;Dels=0.0;FS=5.972;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.44;QD=16.23;ReadPosRankSum=-1.242;SNPEFF_AMINO_ACID_CHANGE=F1314Y;SNPEFF_CODON_CHANGE=tTt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82832826_82838087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343200    GT:AD:DP:GQ:PL    0/1:22,24:46:99:776,0,753
5    82849120    rs6873404    T    A    210.47    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=11.69;ReadPosRankSum=-1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265077    GT:AD:DP:GQ:PL    0/1:10,8:18:99:240,0,286
5    82868173    rs309585    G    A    429.43    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DB;DP=36;Dels=0.0;FS=9.259;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.417;QD=11.61;ReadPosRankSum=-0.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265077    GT:AD:DP:GQ:PL    0/1:20,16:36:99:459,0,605
5    82875800    rs308365    C    T    3387.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.36;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=V1492;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82875799_82875981;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512590    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3387,250,0
5    82940273    rs2242128    C    G    695.47    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.945;DB;DP=59;Dels=0.0;FS=2.305;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=1.717;QD=11.79;ReadPosRankSum=0.649;SNPEFF_AMINO_ACID_CHANGE=G228;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_82940182_82940484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAPLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274341    GT:AD:DP:GQ:PL    0/1:30,29:59:99:725,0,869
5    82940510    rs1457081    T    C    219.51    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.654;DB;DP=20;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=10.98;ReadPosRankSum=0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAPLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274341    GT:AD:DP:GQ:PL    0/1:11,9:20:99:250,0,251
5    82940548    rs1457082    C    T    93.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.637;QD=7.79;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAPLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274341    GT:AD:DP:GQ:PL    0/1:8,4:12:99:124,0,255
5    83269964    rs12513999    G    A    165.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296591    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:198,15,0
5    83433000    .    C    CAT    608.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.139;DP=30;FS=0.0;HRun=0;HaplotypeScore=252.7867;IndelType=I;MQ=56.58;MQ0=0;MQRankSum=1.172;QD=20.29;ReadPosRankSum=-0.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296591    GT:AD:DP:GQ:PL    0/1:15,15:30:99:648,0,151
5    83433002    rs142285626    T    TACAC    673    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.723;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=295.7067;IndelType=I;MQ=56.03;MQ0=0;MQRankSum=-0.155;QD=21.03;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296591    GT:AD:DP:GQ:PL    0/1:23,8:32:94.56:712,0,95
5    83476194    rs163715    G    A    340.96    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=16;Dels=0.0;FS=2.307;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=21.31;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296591    GT:AD:DP:GQ:PL    0/1:5,11:16:99:371,0,166
5    83549730    rs78042591    A    G    98.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=16.42;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296591    GT:AD:DP:GQ:PL    0/1:2,4:6:64.36:128,0,64
5    83549800    rs16901006    T    C    140.02    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=1.7834;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=11.67;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296591    GT:AD:DP:GQ:PL    0/1:7,5:12:99:170,0,181
5    83550060    rs111238659    A    AT    216.73    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=88.0712;IndelType=I;MQ=59.49;MQ0=0;MQRankSum=-0.88;QD=9.03;ReadPosRankSum=-1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296591    GT:AD:DP:GQ:PL    0/1:15,9:24:99:256,0,208
5    85578305    rs7735557    T    C    212.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.42;MQ0=0;QD=30.41;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:246,18,0
5    85578826    rs62373400    C    T    868.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.909;DB;DP=62;Dels=0.0;FS=3.096;HRun=0;HaplotypeScore=0.6651;MQ=41.97;MQ0=3;MQRankSum=-0.56;QD=14.0;ReadPosRankSum=-1.011;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:31,31:62:99:898,0,778
5    85580819    .    C    T    41.78    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=2.595;DP=32;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=56.34;MQ0=0;MQRankSum=-3.529;QD=1.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:27,5:32:71.78:72,0,1023
5    85580899    rs111908850    A    C    31.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=-1.026;QD=7.85;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:61,0,70
5    85582712    rs2964837    T    C    698.98    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=74;Dels=0.0;FS=1.018;HRun=0;HaplotypeScore=0.0;MQ=47.53;MQ0=3;MQRankSum=-5.655;QD=9.45;ReadPosRankSum=-1.274;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:38,36:74:99:729,0,1202
5    85583507    rs71580744    T    G    1286.77    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.58;DB;DP=96;Dels=0.0;FS=6.768;HRun=1;HaplotypeScore=5.8036;MQ=41.33;MQ0=8;MQRankSum=1.826;QD=13.4;ReadPosRankSum=-0.153;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:39,57:96:99:1317,0,719
5    85583642    rs71641946    C    T    1945.89    PASS    AB=0.402;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.297;DB;DP=117;Dels=0.0;FS=3.791;HRun=0;HaplotypeScore=0.9947;MQ=42.49;MQ0=1;MQRankSum=1.807;QD=16.63;ReadPosRankSum=2.002;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:47,70:117:99:1976,0,984
5    85583651    rs144722739    C    T    909.72    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.72;DB;DP=115;Dels=0.0;FS=0.799;HRun=1;HaplotypeScore=6.5488;MQ=41.71;MQ0=1;MQRankSum=-1.03;QD=7.91;ReadPosRankSum=-1.311;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:71,44:115:99:940,0,1999
5    85586579    rs10066606    T    C    226.85    MQFilter40    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.002;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.3;MQ0=2;MQRankSum=2.534;QD=13.34;ReadPosRankSum=0.177;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:7,9:17:99:257,0,117
5    85586584    rs10038100    C    T    94.79    MQFilter40    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.49;MQ0=2;MQRankSum=-3.031;QD=4.99;ReadPosRankSum=-1.395;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:9,10:19:99:125,0,278
5    85588845    rs72774135    A    T    66.30    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.504;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7345;MQ=44.86;MQ0=0;MQRankSum=-1.748;QD=3.16;ReadPosRankSum=0.047;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    0/1:17,4:21:96.29:96,0,506
5    85591932    rs4629629    C    T    222.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.747;QD=27.79;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NBPF22P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508988    GT:AD:DP:GQ:PL    1/1:1,7:8:21.06:255,21,0
5    86564995    rs3734000    T    A    340.33    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.641;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=16.21;ReadPosRankSum=-0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274376    GT:AD:DP:GQ:PL    0/1:10,11:21:99:370,0,358
5    86633973    rs3752862    G    A    846.64    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=47;Dels=0.0;FS=1.992;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.625;QD=18.01;ReadPosRankSum=-1.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274376    GT:AD:DP:GQ:PL    0/1:19,28:47:99:877,0,632
5    86667856    rs35014912    G    GA    586.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=10;HaplotypeScore=48.108;IndelType=I;MQ=60.98;MQ0=0;QD=26.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509953    GT:AD:DP:GQ:PL    1/1:4,18:22:60.13:628,60,0
5    86695274    rs2230641    A    G    1208.61    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=86;Dels=0.0;FS=4.201;HRun=0;HaplotypeScore=1.9298;MQ=60.0;MQ0=0;MQRankSum=0.03;QD=14.05;ReadPosRankSum=0.419;SNPEFF_AMINO_ACID_CHANGE=V196A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_86695211_86695322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCNH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504878    GT:AD:DP:GQ:PL    0/1:44,42:86:99:1239,0,1261
5    86707190    rs146974076    T    C    415.39    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=60.0;MQ0=0;MQRankSum=-0.724;QD=14.32;ReadPosRankSum=-0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCNH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256897    GT:AD:DP:GQ:PL    0/1:16,13:29:99:445,0,544
5    87498849    rs3097146    G    A    2803.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_87498779_87498892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506536    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2836,211,0
5    87502325    rs357515    G    A    152.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=13;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=15.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513487    GT:AD:DP:GQ:PL    1/1:0,10:10:18.03:185,18,0
5    87503087    rs34534189    GACT    G    225    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=28.9887;IndelType=D;MQ=61.34;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296595    GT:AD:DP:GQ:PL    1/1:1,6:7:18.05:267,18,0
5    87516543    .    AG    A    286.44    PASS    AB=0.779;AC=1;AF=0.50;AN=2;BaseQRankSum=0.374;DP=60;FS=19.098;HRun=1;HaplotypeScore=473.066;IndelType=D;MQ=43.92;MQ0=0;MQRankSum=-3.263;QD=4.77;ReadPosRankSum=-4.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296595    GT:AD:DP:GQ:PL    0/1:43,17:60:99:325,0,653
5    88018388    rs56660854    GA    G    562.04    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=4.359;DB;DP=113;FS=3.491;HRun=13;HaplotypeScore=489.7145;IndelType=D;MQ=57.93;MQ0=0;MQRankSum=-1.292;QD=4.97;ReadPosRankSum=0.946;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508569    GT:AD:DP:GQ:PL    0/1:63,44:113:99:601,0,1001
5    89703641    rs4873    C    G    2105.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.56;QD=32.39;ReadPosRankSum=-1.359;SNPEFF_AMINO_ACID_CHANGE=V10L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_89703516_89703651;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283122    GT:AD:DP:GQ:PL    1/1:1,64:65:99:2138,128,0
5    89769728    rs2162986    T    C    206.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.76;SNPEFF_AMINO_ACID_CHANGE=T128A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_89769656_89770585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093510.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556122    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:239,18,0
5    89781215    rs2562518    G    A    30.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
5    89781594    rs2115500    C    T    901.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512239    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:934,69,0
5    89807711    rs6897910    G    A    74.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554351    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
5    89814604    rs10679357    G    GTGACC    2985.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=147.1922;IndelType=I;MQ=52.48;MQ0=0;QD=78.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453259    GT:AD:DP:GQ:PL    1/1:7,28:38:99:3028,102,0
5    89815312    rs34548009    G    GA    775.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=8;HaplotypeScore=61.6674;IndelType=I;MQ=61.46;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399107    GT:AD:DP:GQ:PL    1/1:2,23:25:72.20:817,72,0
5    89820984    rs10069050    T    C    1576.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=32.17;SNPEFF_AMINO_ACID_CHANGE=E41;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_89820852_89821117;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027323.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554351    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1609,117,0
5    89909972    rs71735029    GA    G    231.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.817;DB;DP=39;FS=0.0;HRun=17;HaplotypeScore=242.0059;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=1.708;QD=5.94;ReadPosRankSum=-0.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405460    GT:AD:DP:GQ:PL    1/1:20,13:39:12.82:273,13,0
5    89909989    .    AG    A    145.55    PASS    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=3.06;DP=46;FS=33.157;HRun=1;HaplotypeScore=281.7564;IndelType=D;MQ=55.31;MQ0=0;MQRankSum=0.113;QD=3.16;ReadPosRankSum=-0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405460    GT:AD:DP:GQ:PL    0/1:37,9:46:99:185,0,439
5    89920694    rs11744994    T    C    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508842    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:115,12,0
5    89941743    rs2366776    T    C    857.71    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=43;Dels=0.0;FS=3.39;HRun=0;HaplotypeScore=1.9866;MQ=58.92;MQ0=0;MQRankSum=0.497;QD=19.95;ReadPosRankSum=0.064;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512205    GT:AD:DP:GQ:PL    0/1:15,28:43:99:888,0,457
5    89943771    rs66505172    TG    T    290.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=120.291;IndelType=D;MQ=53.15;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512205    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:333,27,0
5    90074651    rs13355572    C    T    1312.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4782;MQ=59.57;MQ0=0;MQRankSum=-0.079;QD=12.15;ReadPosRankSum=-0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296619    GT:AD:DP:GQ:PL    0/1:60,48:108:99:1342,0,1914
5    90107108    rs2438374    A    G    1861.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=E1005G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_90106050_90107155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425867    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1894,144,0
5    90111700    rs2443080    T    C    399.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296619    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:432,33,0
5    90118985    rs12520043    A    G    34.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.52;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296619    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:64,0,61
5    90119324    rs2438378    G    A    4361.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1673;MQ=58.96;MQ0=0;MQRankSum=-1.21;QD=33.81;ReadPosRankSum=0.467;SNPEFF_AMINO_ACID_CHANGE=V1088M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_90119242_90119413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425867    GT:AD:DP:GQ:PL    1/1:1,127:129:99:4361,328,0
5    90151589    rs2247870    G    A    3458.97    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=227;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9717;MQ=59.39;MQ0=0;MQRankSum=-1.526;QD=15.24;ReadPosRankSum=0.151;SNPEFF_AMINO_ACID_CHANGE=V1537I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_90151558_90151718;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425867    GT:AD:DP:GQ:PL    0/1:104,123:227:99:3459,0,2990
5    90368596    rs9293558    C    T    220.95    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=24.55;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296619    GT:AD:DP:GQ:PL    0/1:2,7:9:57.32:251,0,57
5    90445829    rs35858094    T    TTC    1790.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=187.0838;IndelType=I;MQ=57.86;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296619    GT:AD:DP:GQ:PL    1/1:10,39:48:99:1832,141,0
5    90445830    rs5869534    T    TC    876.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=237.2657;IndelType=I;MQ=57.63;MQ0=0;QD=17.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296619    GT:AD:DP:GQ:PL    1/1:41,8:48:99:919,129,0
5    90449031    rs7726023    T    C    897.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296619    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:931,69,0
5    90669352    rs6866923    A    C    317.04    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.016;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.277;QD=13.78;ReadPosRankSum=0.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503192    GT:AD:DP:GQ:PL    0/1:12,11:23:99:347,0,424
5    90669400    rs6452952    A    T    2092.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503192    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2126,157,0
5    90669771    rs2303130    A    G    283.45    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=16.67;ReadPosRankSum=-1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503192    GT:AD:DP:GQ:PL    0/1:6,11:17:99:313,0,186
5    90671274    rs1363839    A    T    583.59    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.133;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.559;QD=14.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503192    GT:AD:DP:GQ:PL    0/1:20,19:39:99:614,0,660
5    92935973    rs149400949    T    C    178.67    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=25.52;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-65F13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513563    GT:AD:DP:GQ:PL    0/1:1,6:7:20.69:209,0,21
5    93119893    rs6879620    G    A    190.27    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=23.78;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM172A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510445    GT:AD:DP:GQ:PL    0/1:1,7:8:21.16:220,0,21
5    93388777    .    T    TATAG    908.56    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.468;DP=36;FS=0.0;HRun=0;HaplotypeScore=198.86;IndelType=I;MQ=61.49;MQ0=0;MQRankSum=1.428;QD=25.24;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM172A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395965    GT:AD:DP:GQ:PL    0/1:10,13:36:99:948,0,310
5    93410244    rs7732578    C    T    347.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM172A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395965    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:381,30,0
5    93720017    rs394317    C    T    643.12    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.046;DB;DP=50;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=3.5611;MQ=59.54;MQ0=0;MQRankSum=-0.283;QD=12.86;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0825;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427991    GT:AD:DP:GQ:PL    0/1:28,22:50:99:673,0,1010
5    93722050    rs29913    G    T    1593.93    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.293;DB;DP=109;Dels=0.0;FS=0.723;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.865;QD=14.62;ReadPosRankSum=-2.223;SNPEFF_AMINO_ACID_CHANGE=I1172;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_93721951_93722109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0825;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427991    GT:AD:DP:GQ:PL    0/1:57,52:109:99:1624,0,1753
5    93731985    rs308207    A    G    2061.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_AMINO_ACID_CHANGE=S1039;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_93731806_93732214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0825;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427991    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2094,157,0
5    93753017    rs29910    C    T    3915.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.96;SNPEFF_AMINO_ACID_CHANGE=A851T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_93752906_93753070;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0825;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427991    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3916,295,0
5    93776023    rs1030101    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0825;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312498    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
5    93788638    rs17326194    A    G    831.55    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=56;Dels=0.0;FS=6.52;HRun=1;HaplotypeScore=3.4381;MQ=59.59;MQ0=0;MQRankSum=-0.499;QD=14.85;ReadPosRankSum=-1.631;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0825;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312498    GT:AD:DP:GQ:PL    0/1:26,30:56:99:862,0,805
5    93806964    rs11397200    A    AC    182.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=28.5659;IndelType=I;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0825;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312498    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
5    93872945    rs6556847    T    C    132.30    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=11.02;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0825;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312498    GT:AD:DP:GQ:PL    0/1:7,5:12:99:162,0,252
5    94046387    rs306573    A    G    259.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    1/1:0,10:10:27.05:292,27,0
5    94050447    rs2638    C    T    3535.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3535,265,0
5    94050487    rs2636    T    A    4024.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=I421;SNPEFF_CODON_CHANGE=atA/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_94050482_94050591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505078    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4024,307,0
5    94206202    rs159032    C    T    1117.65    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=58;Dels=0.0;FS=2.556;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.058;QD=19.27;ReadPosRankSum=-0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    0/1:20,38:58:99:1148,0,555
5    94230572    rs34628738    C    CT    64.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=16;FS=0.0;HRun=15;HaplotypeScore=101.8272;IndelType=I;MQ=53.8;MQ0=0;MQRankSum=-1.106;QD=4.02;ReadPosRankSum=-0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    0/1:7,5:16:12.63:103,0,13
5    94248829    rs168709    A    T    158.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
5    94248867    rs73136032    T    G    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
5    94259621    rs34187028    C    T    622.09    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.399;QD=20.07;ReadPosRankSum=-2.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    0/1:12,19:31:99:652,0,419
5    94278129    rs293035    T    C    482.92    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.878;DB;DP=35;Dels=0.0;FS=1.33;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.414;QD=13.8;ReadPosRankSum=0.579;SNPEFF_AMINO_ACID_CHANGE=V107;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_94278052_94278131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    0/1:16,19:35:99:513,0,401
5    94278154    rs159351    C    T    367.15    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.023;DB;DP=19;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=19.32;ReadPosRankSum=-0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312216    GT:AD:DP:GQ:PL    0/1:8,11:19:99:397,0,239
5    94288790    rs6892227    C    A    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505465    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
5    94727367    rs34118099    G    GA    95.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;FS=0.0;HRun=9;HaplotypeScore=24.876;IndelType=I;MQ=62.13;MQ0=0;MQRankSum=0.876;QD=9.55;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283357    GT:AD:DP:GQ:PL    0/1:5,5:10:77.17:135,0,77
5    94728631    rs2546097    G    T    379.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283357    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:413,30,0
5    94772540    rs6878669    C    T    929.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=P275S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_94772504_94772610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283357    GT:AD:DP:GQ:PL    1/1:0,28:28:72.22:963,72,0
5    94782516    rs36108418    C    CT    54.85    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;FS=0.0;HRun=12;HaplotypeScore=44.401;IndelType=I;MQ=61.94;MQ0=0;MQRankSum=0.72;QD=4.99;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503361    GT:AD:DP:GQ:PL    0/1:5,6:11:25.81:94,0,26
5    94785647    rs2731828    T    C    76.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.78;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503361    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,108
5    94786142    rs7709828    C    T    78.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283357    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
5    94800234    rs7534    C    T    182.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.573;QD=20.25;ReadPosRankSum=-0.573;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358746    GT:AD:DP:GQ:PL    0/1:3,6:9:86.79:212,0,87
5    94820639    rs6891486    G    A    311.58    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.146;DB;DP=33;Dels=0.0;FS=3.912;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.614;QD=9.44;ReadPosRankSum=0.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358746    GT:AD:DP:GQ:PL    0/1:20,13:33:99:342,0,687
5    94826655    rs2303650    C    A    309.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.069;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=1.078;QD=10.33;ReadPosRankSum=-1.369;SNPEFF_AMINO_ACID_CHANGE=R1296S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_94826612_94826740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358746    GT:AD:DP:GQ:PL    0/1:15,15:30:99:340,0,504
5    94852180    rs6861524    G    A    547.69    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.095;DB;DP=44;Dels=0.0;FS=6.759;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.498;QD=12.45;ReadPosRankSum=0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358746    GT:AD:DP:GQ:PL    0/1:25,19:44:99:578,0,798
5    94859602    rs74760653    T    C    203.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=14.56;ReadPosRankSum=0.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503279    GT:AD:DP:GQ:PL    0/1:7,7:14:99:234,0,239
5    94861118    rs17084873    G    C    1431.25    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-1.389;QD=14.46;ReadPosRankSum=0.85;SNPEFF_AMINO_ACID_CHANGE=L389V;SNPEFF_CODON_CHANGE=Cta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_94861102_94861205;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000514952    GT:AD:DP:GQ:PL    0/1:49,50:99:99:1461,0,1594
5    94864505    rs10476652    C    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503279    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,73
5    94876217    rs11953160    C    G    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513823    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,74
5    94903527    rs73777227    T    C    103.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=9.43;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380009    GT:AD:DP:GQ:PL    0/1:6,5:11:99:134,0,199
5    94916765    rs17084910    G    A    131.09    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=11.92;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380009    GT:AD:DP:GQ:PL    0/1:6,5:11:99:161,0,176
5    94927426    rs58373522    T    C    105.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537857    GT:AD:DP:GQ:PL    0/1:2,4:6:64.35:135,0,64
5    95084131    rs34896    G    A    933.41    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.877;DB;DP=51;Dels=0.0;FS=8.793;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.266;QD=18.3;ReadPosRankSum=0.739;SNPEFF_AMINO_ACID_CHANGE=A170;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_95084037_95084191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RHOBTB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379982    GT:AD:DP:GQ:PL    0/1:18,33:51:99:963,0,481
5    95091194    rs34898    C    T    1712.19    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.647;DB;DP=123;Dels=0.0;FS=5.972;HRun=0;HaplotypeScore=2.7156;MQ=59.44;MQ0=0;MQRankSum=0.759;QD=13.81;ReadPosRankSum=1.308;SNPEFF_AMINO_ACID_CHANGE=Y259;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_95091100_95091465;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RHOBTB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379982    GT:AD:DP:GQ:PL    0/1:63,59:123:99:1742,0,1706
5    95091201    rs34899    A    G    1548.16    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.895;DB;DP=121;Dels=0.0;FS=8.923;HRun=0;HaplotypeScore=1.8216;MQ=59.62;MQ0=0;MQRankSum=-0.232;QD=12.79;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=N262D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_95091100_95091465;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RHOBTB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379982    GT:AD:DP:GQ:PL    0/1:64,57:121:99:1578,0,1811
5    95116141    rs55706606    A    T    429.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=58.63;MQ0=0;MQRankSum=-0.283;QD=12.62;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507605    GT:AD:DP:GQ:PL    0/1:17,17:34:99:459,0,500
5    95119328    rs9314157    A    G    98.63    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.32;MQ0=0;MQRankSum=-0.421;QD=6.16;ReadPosRankSum=1.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508780    GT:AD:DP:GQ:PL    0/1:9,7:16:99:129,0,259
5    95152085    rs6556883    A    G    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512469    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
5    95732986    rs271920    T    C    92.11    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=16;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=5.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311106    GT:AD:DP:GQ:PL    0/1:9,7:16:99:122,0,337
5    95733112    rs6233    A    G    468.12    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.096;DB;DP=36;Dels=0.0;FS=1.421;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.16;QD=13.0;ReadPosRankSum=1.091;SNPEFF_AMINO_ACID_CHANGE=N503;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_95733040_95733173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508626    GT:AD:DP:GQ:PL    0/1:21,15:36:99:498,0,732
5    95746355    rs156020    T    G    107.77    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=11.97;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311106    GT:AD:DP:GQ:PL    0/1:4,5:9:99:138,0,137
5    96031569    rs9667    A    G    315.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.488;QD=8.76;ReadPosRankSum=-1.397;SNPEFF_AMINO_ACID_CHANGE=Q41;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96031540_96031611;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506811    GT:AD:DP:GQ:PL    0/1:21,14:36:99:345,0,621
5    96064633    rs27531    A    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    96064715    rs28042    A    T    173.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=17.35;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507487    GT:AD:DP:GQ:PL    0/1:4,6:10:99:203,0,134
5    96066652    rs151904    C    T    365.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504532    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:399,30,0
5    96071780    rs13183352    A    G    111.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.36;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309190    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,144
5    96076487    rs7724759    G    A    1120.30    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.19;DB;DP=77;Dels=0.0;FS=3.317;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.316;QD=14.55;ReadPosRankSum=-1.576;SNPEFF_AMINO_ACID_CHANGE=S151;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96076449_96076487;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504465    GT:AD:DP:GQ:PL    0/1:40,37:77:99:1150,0,1264
5    96078309    rs26503    G    A    366    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421689    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:399,30,0
5    96079387    rs26505    C    T    843.51    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=3.882;DB;DP=43;Dels=0.0;FS=1.433;HRun=0;HaplotypeScore=1.7998;MQ=59.46;MQ0=0;MQRankSum=0.465;QD=19.62;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=H19;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96079244_96079450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515663    GT:AD:DP:GQ:PL    0/1:16,27:43:99:874,0,458
5    96079402    rs26506    C    T    1391.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.67;SNPEFF_AMINO_ACID_CHANGE=D24;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96079244_96079450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515663    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1424,105,0
5    96082401    rs27851    C    T    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511097    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
5    96086334    rs754615    G    C    411.01    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=11.11;ReadPosRankSum=-1.226;SNPEFF_AMINO_ACID_CHANGE=C123S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96086291_96086386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508579    GT:AD:DP:GQ:PL    0/1:21,16:37:99:441,0,559
5    96089658    rs27583    G    A    319.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509259    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:352,27,0
5    96092990    rs28081    A    G    587.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=29.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513666    GT:AD:DP:GQ:PL    1/1:0,20:20:54.14:620,54,0
5    96093222    rs27654    G    A    1470.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.613;DB;DP=110;Dels=0.0;FS=2.777;HRun=1;HaplotypeScore=1.5757;MQ=59.58;MQ0=0;MQRankSum=-0.181;QD=13.37;ReadPosRankSum=-0.169;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513666    GT:AD:DP:GQ:PL    0/1:55,55:110:99:1501,0,1750
5    96093441    rs27969    C    T    181.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9933;MQ=58.33;MQ0=0;MQRankSum=0.312;QD=12.95;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513666    GT:AD:DP:GQ:PL    0/1:6,8:14:99:211,0,151
5    96098214    rs27582    G    A    69.92    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.99;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309190    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,147
5    96100764    rs26501    G    C    210.75    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.905;QD=10.04;ReadPosRankSum=1.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309190    GT:AD:DP:GQ:PL    0/1:13,8:21:99:241,0,456
5    96101031    rs71752489    TAAAA    T    117.05    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=51;FS=0.0;HRun=26;HaplotypeScore=516.1742;IndelType=D;MQ=40.65;MQ0=0;MQRankSum=0.054;QD=2.3;ReadPosRankSum=1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309190    GT:AD:DP:GQ:PL    0/1:36,5:51:83.10:156,0,83
5    96101066    rs11399505    T    TA    1658.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=2;HaplotypeScore=299.4287;IndelType=I;MQ=37.51;MQ0=0;QD=42.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309190    GT:AD:DP:GQ:PL    1/1:6,33:39:99:1701,114,0
5    96101944    rs27524    A    G    932.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309190    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:966,72,0
5    96101959    rs27525    C    T    57.89    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.89;MQ0=0;MQRankSum=1.567;QD=2.76;ReadPosRankSum=-2.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309190    GT:AD:DP:GQ:PL    0/1:17,4:21:87.89:88,0,611
5    96103352    rs26481    C    T    35.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.78;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510156    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:65,0,65
5    96107202    rs27689    G    T    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510156    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
5    96112083    rs1065407    T    G    682.56    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.283;DB;DP=65;Dels=0.0;FS=2.402;HRun=2;HaplotypeScore=1.2434;MQ=59.71;MQ0=0;MQRankSum=-1.046;QD=10.5;ReadPosRankSum=0.253;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309190    GT:AD:DP:GQ:PL    0/1:38,26:65:99:713,0,1179
5    96116031    rs71978924    AACTC    A    282.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=47.7344;IndelType=D;MQ=48.72;MQ0=0;MQRankSum=-2.054;QD=31.44;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510098    GT:AD:DP:GQ:PL    0/1:3,6:9:99:322,0,207
5    96116112    rs34765952    AT    A    332.50    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=0.719;DB;DP=43;FS=0.0;HRun=12;HaplotypeScore=151.7104;IndelType=D;MQ=58.08;MQ0=0;MQRankSum=1.059;QD=7.73;ReadPosRankSum=-1.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510098    GT:AD:DP:GQ:PL    0/1:21,22:43:99:372,0,455
5    96116940    rs27042    G    A    713.14    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=46;Dels=0.0;FS=8.316;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.263;QD=15.5;ReadPosRankSum=-1.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510098    GT:AD:DP:GQ:PL    0/1:20,26:46:99:743,0,677
5    96117300    rs27043    G    A    415.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510098    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:449,33,0
5    96118852    rs27044    G    C    3084.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4871;MQ=59.75;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=Q730E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96118755_96118939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3117,235,0
5    96118866    rs17482078    C    T    1390.19    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.969;DB;DP=99;Dels=0.0;FS=5.127;HRun=2;HaplotypeScore=1.9226;MQ=59.77;MQ0=0;MQRankSum=2.065;QD=14.04;ReadPosRankSum=-0.451;SNPEFF_AMINO_ACID_CHANGE=R725Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96118755_96118939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    0/1:48,51:99:99:1420,0,1347
5    96119579    rs70981840    A    ACT    348.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=25.9491;IndelType=I;MQ=53.03;MQ0=0;QD=49.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510098    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:391,21,0
5    96121370    rs34388216    T    TA    210.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=3;HaplotypeScore=23.816;IndelType=I;MQ=63.51;MQ0=0;QD=35.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:252,18,0
5    96121406    rs469876    A    G    94.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.034;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=6.73;ReadPosRankSum=-0.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    0/1:8,6:14:99:124,0,255
5    96121524    rs469783    C    T    1186.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=A637;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96121492_96121675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1219,87,0
5    96121715    rs469758    C    T    846.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    1/1:0,27:28:72.22:879,72,0
5    96122210    rs10050860    C    T    274.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.175;DB;DP=32;Dels=0.0;FS=5.822;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.097;QD=8.59;ReadPosRankSum=-0.292;SNPEFF_AMINO_ACID_CHANGE=D575N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96122174_96122253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    0/1:20,12:32:99:305,0,570
5    96122260    rs30379    T    G    987.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    1/1:0,31:31:72.24:1021,72,0
5    96122281    rs30380    A    C    793.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:826,60,0
5    96122458    rs13154629    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
5    96124330    rs30187    T    C    1188.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=K528R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96124234_96124388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    1/1:0,38:38:96.30:1222,96,0
5    96124447    rs30186    G    C    293.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:327,24,0
5    96125910    rs26510    C    T    211.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
5    96126197    rs27710    A    G    3169.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.77;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503311    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3203,232,0
5    96126308    rs27529    A    G    2449.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.69;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=S453;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96126215_96126346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2482,190,0
5    96127905    rs27640    T    C    2117.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2151,159,0
5    96129512    rs27434    A    G    1196.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=33.23;SNPEFF_AMINO_ACID_CHANGE=A356;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96129506_96129660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    1/1:0,36:36:93.26:1229,93,0
5    96129535    rs2287987    T    C    504.90    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.42;MQ0=0;MQRankSum=0.547;QD=12.62;ReadPosRankSum=0.219;SNPEFF_AMINO_ACID_CHANGE=M349V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96129506_96129660;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    0/1:23,17:40:99:535,0,830
5    96130836    rs26618    T    C    438.64    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=32;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=1.387;QD=13.71;ReadPosRankSum=-0.893;SNPEFF_AMINO_ACID_CHANGE=I276M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96130745_96130865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    0/1:18,14:32:99:469,0,564
5    96139066    rs10062964    C    T    402.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.03;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.2032;MQ=59.34;MQ0=0;MQRankSum=0.448;QD=11.49;ReadPosRankSum=-0.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507154    GT:AD:DP:GQ:PL    0/1:17,17:35:99:432,0,575
5    96139250    rs26653    C    G    1455.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.308;DB;DP=51;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.9973;MQ=58.26;MQ0=0;MQRankSum=-0.813;QD=28.54;ReadPosRankSum=0.601;SNPEFF_AMINO_ACID_CHANGE=R127P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96139106_96139646;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    1/1:1,50:51:88.13:1488,88,0
5    96139714    rs35307952    AG    A    296.68    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=34.4497;IndelType=D;MQ=60.77;MQ0=0;MQRankSum=2.133;QD=21.19;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296754    GT:AD:DP:GQ:PL    0/1:5,9:14:99:336,0,198
5    96225252    rs2278019    G    A    354.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=25;Dels=0.0;FS=10.02;HRun=2;HaplotypeScore=2.179;MQ=59.07;MQ0=0;MQRankSum=0.646;QD=14.19;ReadPosRankSum=0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510309    GT:AD:DP:GQ:PL    0/1:12,12:25:99:385,0,335
5    96230883    rs3832367    A    ATT    226.40    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;FS=0.0;HRun=6;HaplotypeScore=39.414;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=-2.074;QD=17.42;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:7,6:13:99:265,0,214
5    96231000    rs2549782    G    T    450.74    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=40;Dels=0.0;FS=2.795;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.047;QD=11.27;ReadPosRankSum=1.427;SNPEFF_AMINO_ACID_CHANGE=K347N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96230950_96231063;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:22,18:40:99:481,0,627
5    96232142    rs2548538    T    A    497.84    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.328;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=57.59;MQ0=0;MQRankSum=0.1;QD=12.77;ReadPosRankSum=1.213;SNPEFF_AMINO_ACID_CHANGE=P390;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96232077_96232208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:23,16:39:99:528,0,719
5    96232222    rs2548537    G    C    254.50    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.452;DB;DP=26;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=0.8667;MQ=57.29;MQ0=0;MQRankSum=-2.451;QD=9.79;ReadPosRankSum=-0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:16,10:26:99:284,0,553
5    96232250    rs34701361    G    GAAA    641.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.986;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=112.8969;IndelType=I;MQ=53.95;MQ0=0;MQRankSum=-1.701;QD=32.05;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:10,10:20:99:680,0,499
5    96232286    rs2549785    C    T    270.54    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.52;MQ0=0;MQRankSum=-0.635;QD=16.91;ReadPosRankSum=1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:7,9:16:99:301,0,241
5    96232345    rs56321917    CAT    C    427.56    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=4.433;DB;DP=28;FS=6.232;HRun=0;HaplotypeScore=116.5803;IndelType=D;MQ=60.34;MQ0=0;MQRankSum=1.23;QD=15.27;ReadPosRankSum=-0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:16,12:28:99:467,0,834
5    96232402    rs2548536    T    A    783.39    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.973;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.39;MQ0=0;MQRankSum=-0.873;QD=13.06;ReadPosRankSum=-0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:31,29:60:99:813,0,989
5    96235896    rs2248374    A    G    868.64    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.561;DB;DP=74;Dels=0.0;FS=11.113;HRun=0;HaplotypeScore=2.7714;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=11.74;ReadPosRankSum=-1.447;SNPEFF_AMINO_ACID_CHANGE=V525;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96235825_96235949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513084    GT:AD:DP:GQ:PL    0/1:44,30:74:99:899,0,1413
5    96237114    rs187265    C    G    562.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DB;DP=36;Dels=0.0;FS=2.083;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.748;QD=15.63;ReadPosRankSum=-0.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513368    GT:AD:DP:GQ:PL    0/1:16,20:36:99:593,0,488
5    96237326    rs2287988    G    A    356.75    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7552;MQ=59.45;MQ0=0;MQRankSum=-0.068;QD=8.49;ReadPosRankSum=-0.068;SNPEFF_AMINO_ACID_CHANGE=Q518;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96237210_96237385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:27,15:42:99:387,0,874
5    96237413    rs171647    C    T    207.36    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=12.96;ReadPosRankSum=1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513368    GT:AD:DP:GQ:PL    0/1:9,7:16:99:237,0,265
5    96239294    rs1423568    A    G    490.57    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.07;DB;DP=39;Dels=0.0;FS=3.333;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.803;QD=12.58;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513368    GT:AD:DP:GQ:PL    0/1:21,18:39:99:521,0,644
5    96244549    rs2549794    C    T    179.11    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.098;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.927;QD=10.54;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:10,7:17:99:209,0,362
5    96244585    rs2548527    A    C    292.52    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.36;MQ0=0;MQRankSum=0.921;QD=10.09;ReadPosRankSum=1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:18,11:29:99:323,0,639
5    96244638    rs2549795    A    G    693.43    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=61;Dels=0.0;FS=1.181;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=11.37;ReadPosRankSum=0.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:36,25:61:99:723,0,1130
5    96245343    rs2549796    C    T    876.69    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=57;Dels=0.0;FS=7.389;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.759;QD=15.38;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=G698;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96245284_96245468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:24,33:57:99:907,0,679
5    96245439    rs1056893    C    T    296.29    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.529;QD=8.23;ReadPosRankSum=-0.324;SNPEFF_AMINO_ACID_CHANGE=S730;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96245284_96245468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:23,13:36:99:326,0,730
5    96248886    rs1363975    A    G    101.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.017;QD=12.7;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510373    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,140
5    96249115    rs2255546    C    T    1025.61    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=1.342;DB;DP=57;Dels=0.0;FS=3.804;HRun=1;HaplotypeScore=0.7887;MQ=58.78;MQ0=0;MQRankSum=0.024;QD=17.99;ReadPosRankSum=-1.196;SNPEFF_AMINO_ACID_CHANGE=L826;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96249021_96249161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:23,34:57:99:1056,0,751
5    96249323    rs2255633    G    A    66.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=13.26;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510373    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:96,0,68
5    96249351    rs2255634    T    A    34.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.736;QD=8.61;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510373    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:64,0,32
5    96252998    rs1820148    A    G    107.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.0;QD=15.33;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:3,4:7:76.36:137,0,76
5    96253104    rs1363908    T    C    272.91    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=-1.954;QD=12.41;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379904    GT:AD:DP:GQ:PL    0/1:13,9:22:99:303,0,361
5    96322136    rs38033    A    G    291.61    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=17.15;ReadPosRankSum=0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:8,9:17:99:322,0,260
5    96322419    rs38034    C    T    432.21    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=1.121;DB;DP=49;Dels=0.0;FS=7.747;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.302;QD=8.82;ReadPosRankSum=-0.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:31,17:49:99:462,0,925
5    96332085    rs3836862    TC    T    226.38    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=19;FS=2.017;HRun=6;HaplotypeScore=45.5194;IndelType=D;MQ=58.01;MQ0=0;MQRankSum=0.776;QD=11.91;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:9,10:19:99:265,0,298
5    96339102    rs3214461    AC    A    486.59    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=4.863;DB;DP=33;FS=2.165;HRun=1;HaplotypeScore=79.6661;IndelType=D;MQ=59.3;MQ0=0;MQRankSum=0.705;QD=14.75;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:18,15:33:99:526,0,751
5    96339273    rs27613    T    G    469.77    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=43;Dels=0.0;FS=1.238;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-1.036;QD=10.92;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:23,20:43:99:500,0,781
5    96342077    rs11315842    TA    T    62.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=24;FS=8.141;HRun=15;HaplotypeScore=120.1401;IndelType=D;MQ=54.45;MQ0=0;MQRankSum=0.222;QD=2.6;ReadPosRankSum=0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:11,8:24:99:101,0,147
5    96363407    rs27300    C    T    361.36    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.013;DB;DP=25;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.232;QD=14.45;ReadPosRankSum=1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:11,14:25:99:391,0,353
5    96364063    rs27712    C    T    752.86    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.846;DB;DP=48;Dels=0.0;FS=3.126;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.165;QD=15.68;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:23,25:48:99:783,0,634
5    96364454    rs39602    C    G    82.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.52;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LNPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231368    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:112,0,30
5    96430832    rs316187    T    C    63.74    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.97;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2215E18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509481    GT:AD:DP:GQ:PL    0/1:5,3:8:93.73:94,0,181
5    96442957    rs316179    T    A    382.96    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.509;QD=13.21;ReadPosRankSum=0.288;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512378    GT:AD:DP:GQ:PL    0/1:17,12:29:99:413,0,549
5    96498783    rs8654    G    A    1096.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_AMINO_ACID_CHANGE=A547;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96496571_96498929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283109    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1129,84,0
5    96503523    rs160632    C    T    4843.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.84;MQ0=0;MQRankSum=-1.421;QD=32.95;ReadPosRankSum=0.91;SNPEFF_AMINO_ACID_CHANGE=G349R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96503171_96503695;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283109    GT:AD:DP:GQ:PL    1/1:3,144:147:99:4844,323,0
5    96504791    rs10515254    A    G    32.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2215E18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509481    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:62,0,30
5    96506796    rs2432089    T    C    136.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2215E18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509481    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:169,15,0
5    96506797    rs9314188    G    A    79.04    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.81;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2215E18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509481    GT:AD:DP:GQ:PL    0/1:1,4:5:15.56:109,0,16
5    96508943    rs35713904    C    T    469.98    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.299;DB;DP=36;Dels=0.0;FS=2.873;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.539;QD=13.05;ReadPosRankSum=-1.331;SNPEFF_AMINO_ACID_CHANGE=V175I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96508879_96508967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283109    GT:AD:DP:GQ:PL    0/1:17,19:36:99:500,0,566
5    96508998    rs17087396    T    C    316.09    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.134;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.176;QD=15.05;ReadPosRankSum=0.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508991    GT:AD:DP:GQ:PL    0/1:10,11:21:99:346,0,350
5    96509055    rs316194    G    A    93.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.73;ReadPosRankSum=1.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508991    GT:AD:DP:GQ:PL    0/1:4,4:8:99:124,0,146
5    96512683    rs2544771    A    G    556.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508991    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:589,45,0
5    96512865    rs2548319    T    A    3442.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.981;MQ=59.1;MQ0=0;MQRankSum=-0.951;QD=33.42;ReadPosRankSum=0.747;SNPEFF_AMINO_ACID_CHANGE=L151;SNPEFF_CODON_CHANGE=ctA/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96512820_96512995;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283109    GT:AD:DP:GQ:PL    1/1:1,102:103:99:3443,259,0
5    96512871    rs2544772    T    A    3434.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.29;MQ0=0;QD=35.04;SNPEFF_AMINO_ACID_CHANGE=S149;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96512820_96512995;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283109    GT:AD:DP:GQ:PL    1/1:0,97:98:99:3434,250,0
5    96513471    rs2544773    G    C    913.28    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=80;Dels=0.0;FS=1.884;HRun=0;HaplotypeScore=1.8136;MQ=60.0;MQ0=0;MQRankSum=0.77;QD=11.42;ReadPosRankSum=0.721;SNPEFF_AMINO_ACID_CHANGE=S96C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96513436_96513552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283109    GT:AD:DP:GQ:PL    0/1:46,34:80:99:943,0,1528
5    96514982    rs6896160    G    A    531.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2215E18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509481    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:564,45,0
5    96518792    rs3734010    T    G    5443.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9523;MQ=55.51;MQ0=0;QD=32.99;SNPEFF_AMINO_ACID_CHANGE=V38G;SNPEFF_CODON_CHANGE=gTt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_96518712_96518944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2215E18.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509481    GT:AD:DP:GQ:PL    1/1:0,165:165:99:5443,433,0
5    96519094    rs3806945    A    G    233.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2215E18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509481    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:267,21,0
5    97912151    rs29663    C    T    234.61    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=21;Dels=0.0;FS=6.69;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=11.17;ReadPosRankSum=-0.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2341D24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513884    GT:AD:DP:GQ:PL    0/1:11,10:21:99:265,0,324
5    98105435    rs1828170    G    T    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308234    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
5    98115642    rs76606616    G    T    280.28    FSFilter60    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.271;DB;DP=101;Dels=0.0;FS=87.089;HRun=3;HaplotypeScore=6.3777;MQ=54.96;MQ0=0;MQRankSum=-1.922;QD=2.78;ReadPosRankSum=0.475;SNPEFF_AMINO_ACID_CHANGE=L165F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_98115284_98115792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGMB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000513185    GT:AD:DP:GQ:PL    0/1:66,35:101:99:310,0,2201
5    98115828    rs2302983    A    G    2089.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.827;DB;DP=151;Dels=0.0;FS=5.093;HRun=0;HaplotypeScore=1.665;MQ=58.92;MQ0=0;MQRankSum=-0.408;QD=13.84;ReadPosRankSum=1.464;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504776    GT:AD:DP:GQ:PL    0/1:75,75:151:99:2119,0,2086
5    98115932    rs2250807    G    A    626.66    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=16.49;ReadPosRankSum=-0.167;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504776    GT:AD:DP:GQ:PL    0/1:18,19:38:99:657,0,616
5    98192164    rs138635992    AAGG    A    1203.43    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=5.249;DB;DP=65;FS=0.0;HRun=0;HaplotypeScore=265.5118;IndelType=D;MQ=59.25;MQ0=0;MQRankSum=0.45;QD=18.51;ReadPosRankSum=3.299;SNPEFF_AMINO_ACID_CHANGE=P1684-;SNPEFF_CODON_CHANGE=cct/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_5_98191449_98192429;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:36,29:65:99:1242,0,2150
5    98192465    rs692832    T    C    184.37    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.905;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.484;QD=8.02;ReadPosRankSum=2.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:15,8:23:99:214,0,520
5    98192545    rs692759    T    C    130.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
5    98194589    rs2545735    T    C    164.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.835;QD=13.73;ReadPosRankSum=-1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511067    GT:AD:DP:GQ:PL    0/1:4,8:12:99:195,0,136
5    98194618    rs2545734    T    A    276.87    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=24;Dels=0.0;FS=3.171;HRun=8;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=11.54;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511067    GT:AD:DP:GQ:PL    0/1:11,13:24:99:307,0,375
5    98194781    rs330421    C    G    251.28    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.836;DB;DP=20;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.56;ReadPosRankSum=-1.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511067    GT:AD:DP:GQ:PL    0/1:11,9:20:99:281,0,392
5    98195818    rs325203    A    G    323.26    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.42;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=10.1;ReadPosRankSum=0.23;SNPEFF_AMINO_ACID_CHANGE=I51T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_98195676_98195825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422663    GT:AD:DP:GQ:PL    0/1:19,13:32:99:353,0,659
5    98199077    rs10069735    T    C    306.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=22;Dels=0.0;FS=2.813;HRun=0;HaplotypeScore=0.9469;MQ=58.95;MQ0=0;MQRankSum=0.396;QD=13.92;ReadPosRankSum=-0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511067    GT:AD:DP:GQ:PL    0/1:7,14:22:99:336,0,193
5    98199204    rs161941    C    T    319.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.134;DB;DP=40;Dels=0.0;FS=1.302;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=8.0;ReadPosRankSum=0.641;SNPEFF_AMINO_ACID_CHANGE=E1445;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_98199112_98199290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:26,13:40:99:350,0,924
5    98210690    rs7718898    A    C    442.43    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=23;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.527;QD=19.24;ReadPosRankSum=0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:10,13:23:99:472,0,320
5    98210868    rs162140    T    A    279.51    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.089;DB;DP=32;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.075;QD=8.73;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:19,13:32:99:310,0,666
5    98221383    rs34067280    A    AT    615.27    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.744;DB;DP=42;FS=1.684;HRun=1;HaplotypeScore=89.3623;IndelType=I;MQ=58.14;MQ0=0;MQRankSum=-0.357;QD=14.65;ReadPosRankSum=0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:25,17:42:99:654,0,884
5    98228403    rs61759467    T    A    568.52    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.029;DB;DP=32;Dels=0.0;FS=7.607;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=0.253;QD=17.77;ReadPosRankSum=1.499;SNPEFF_AMINO_ACID_CHANGE=E669V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_98228229_98228417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:12,20:32:99:599,0,369
5    98228969    rs2578576    C    A    101.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.7;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,143
5    98232809    rs326468    T    C    309.13    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.708;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=-0.805;QD=11.45;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:15,12:27:99:339,0,505
5    98236831    rs7702352    T    C    1157.46    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.253;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.74;MQ0=0;MQRankSum=-0.191;QD=13.3;ReadPosRankSum=1.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:45,42:87:99:1187,0,1477
5    98261891    rs161744    T    C    123.29    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=11.21;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284049    GT:AD:DP:GQ:PL    0/1:6,5:11:99:153,0,207
5    98858122    rs2963616    G    A    1294.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.9;MQ0=0;QD=29.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1327,102,0
5    98858469    rs28718085    C    G    156.60    MQFilter40    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.162;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.37;MQ0=8;MQRankSum=-5.328;QD=2.34;ReadPosRankSum=-2.055;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    0/1:43,24:67:99:187,0,1295
5    98858624    .    A    G    189.33    MQFilter40    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.58;MQ0=2;QD=18.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:0,10:10:21.03:222,21,0
5    98858733    .    G    A    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=8.1;MQ0=26;MQRankSum=0.736;QD=1.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:21,8:30:6.02:67,6,0
5    98859276    rs75125963    G    T    45.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.98;MQ0=17;QD=2.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:8,13:21:8.99:77,9,0
5    98859363    .    G    C    152.13    MQFilter40    AC=2;AF=1.00;AN=2;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=19.09;MQ0=4;QD=11.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:0,13:13:20.96:185,21,0
5    98859960    rs2511949    A    G    1982.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.702;DB;DP=73;Dels=0.0;FS=2.938;HRun=6;HaplotypeScore=2.5946;MQ=48.04;MQ0=1;MQRankSum=1.662;QD=27.15;ReadPosRankSum=1.251;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:3,70:73:99:2015,105,0
5    98860102    rs150071328    A    G    1094.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=50.54;MQ0=0;QD=27.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:0,39:40:87.26:1128,87,0
5    98860312    rs146885967    G    T    610.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.81;MQ0=5;QD=21.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:2,27:29:57.14:643,57,0
5    98860769    rs74885795    C    T    524.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.22;MQ0=13;QD=17.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    1/1:6,24:30:42.13:558,42,0
5    98861253    rs138365714    A    G    31.97    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.0;MQ0=3;MQRankSum=-0.55;QD=3.2;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-93O17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504077    GT:AD:DP:GQ:PL    0/1:6,4:10:61.96:62,0,104
5    98868275    rs4596426    G    A    2429.45    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.394;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.6516;MQ=28.81;MQ0=8;MQRankSum=1.436;QD=18.69;ReadPosRankSum=1.288;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GUSBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502652    GT:AD:DP:GQ:PL    1/1:3,104:130:99:2462,198,0
5    99724591    .    C    A    457.68    MQFilter40    AC=2;AF=1.00;AN=2;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.15;MQ0=4;QD=17.6;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,24:26:42.09:491,42,0
5    99725376    rs28388868    C    T    549.98    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.398;DB;DP=39;Dels=0.0;FS=1.397;HRun=2;HaplotypeScore=0.0;MQ=46.54;MQ0=4;MQRankSum=1.811;QD=14.1;ReadPosRankSum=0.604;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,19:39:99:580,0,370
5    99725432    rs111922340    CCAAGGGGTGGCTCCCCCAGATCT    C    1801.03    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=2.884;DB;DP=27;FS=10.041;HRun=0;HaplotypeScore=541.2035;IndelType=D;MQ=31.78;MQ0=3;MQRankSum=-1.147;QD=48.68;ReadPosRankSum=3.318;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,12:27:99:1840,0,2801
5    99725541    rs144533176    G    A    446.08    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.33;DB;DP=43;Dels=0.0;FS=13.594;HRun=0;HaplotypeScore=0.9993;MQ=42.63;MQ0=3;MQRankSum=-0.503;QD=10.37;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,19:43:99:476,0,490
5    99725706    rs62387135    C    G    562.08    MQFilter40    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.527;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7172;MQ=31.67;MQ0=4;MQRankSum=-1.87;QD=8.65;ReadPosRankSum=-0.961;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:28,37:65:99:592,0,613
5    99725886    rs113030608    G    C    446.84    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.281;DB;DP=59;Dels=0.0;FS=17.746;HRun=0;HaplotypeScore=0.5784;MQ=42.64;MQ0=4;MQRankSum=-5.541;QD=7.57;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,28:59:99:477,0,989
5    99726069    rs28493703    C    T    280.33    MQFilter40    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.205;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.61;MQ0=17;MQRankSum=0.088;QD=6.37;ReadPosRankSum=-0.908;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,19:44:99:310,0,228
5    99726326    rs28479352    A    C    584.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.55;MQ0=15;QD=13.28;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,44:44:57.08:618,57,0
5    99727292    .    T    C    37.08    MQFilter40;QDFilter2    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DP=25;Dels=0.0;FS=2.869;HRun=0;HaplotypeScore=0.0;MQ=29.44;MQ0=9;MQRankSum=-1.758;QD=1.48;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,11:25:67.07:67,0,347
5    99727309    .    G    T    43.10    MQFilter40;QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=26;Dels=0.0;FS=3.09;HRun=3;HaplotypeScore=0.0;MQ=25.85;MQ0=11;MQRankSum=-0.467;QD=1.66;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,5:26:73.09:73,0,257
5    99727584    rs185374978    C    A    267.19    HaplotypeScoreFilter13;MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.527;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=13.8615;MQ=38.77;MQ0=7;MQRankSum=-2.234;QD=3.82;ReadPosRankSum=-0.393;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:50,20:70:99:297,0,1165
5    99727590    rs62389060    T    C    222.19    HaplotypeScoreFilter13;MQFilter40    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.832;DB;DP=63;Dels=0.0;FS=3.422;HRun=0;HaplotypeScore=14.7029;MQ=39.67;MQ0=7;MQRankSum=-2.201;QD=3.53;ReadPosRankSum=0.878;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:42,19:63:99:252,0,1068
5    99727624    rs62389061    G    C    296.99    HaplotypeScoreFilter13    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.213;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=15.5957;MQ=40.72;MQ0=8;MQRankSum=-3.726;QD=5.21;ReadPosRankSum=-0.585;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,19:57:99:327,0,639
5    99727638    .    C    G    265.95    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=0.494;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=40.71;MQ0=5;MQRankSum=-2.516;QD=4.92;ReadPosRankSum=0.879;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,19:54:99:296,0,866
5    99728030    rs62389063    G    C    158.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=23.33;MQ0=0;QD=19.85;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:20.99:192,21,0
5    99728442    rs111733927    G    A    309.43    MQFilter40    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=27;Dels=0.0;FS=2.291;HRun=2;HaplotypeScore=0.8667;MQ=36.92;MQ0=0;MQRankSum=-0.116;QD=11.46;ReadPosRankSum=0.695;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,14:27:99:339,0,317
5    99897866    rs6874840    G    A    888.51    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.816;DB;DP=67;Dels=0.0;FS=6.617;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.726;QD=13.26;ReadPosRankSum=0.225;SNPEFF_AMINO_ACID_CHANGE=T181;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_99897758_99897892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM174A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312637    GT:AD:DP:GQ:PL    0/1:34,33:67:99:919,0,930
5    99921841    rs2370612    G    C    1259.34    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.329;DB;DP=88;Dels=0.0;FS=6.156;HRun=0;HaplotypeScore=0.9993;MQ=59.74;MQ0=0;MQRankSum=-0.302;QD=14.31;ReadPosRankSum=0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM174A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312637    GT:AD:DP:GQ:PL    0/1:47,41:88:99:1289,0,1551
5    99922081    rs13876    G    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM174A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509040    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:71,0,69
5    100151930    rs2725118    A    G    143.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231461    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
5    100238801    rs1428439    A    G    115.04    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=56.62;MQ0=0;MQRankSum=-0.198;QD=16.43;ReadPosRankSum=0.922;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_5_100238547_100238970;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231461    GT:AD:DP:GQ:PL    0/1:2,5:7:46.42:145,0,46
5    101574885    rs41403944    A    G    186.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.675;QD=8.86;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:12,9:21:99:216,0,405
5    101574897    .    A    AT    133.76    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=3.339;DP=26;FS=6.193;HRun=13;HaplotypeScore=123.6095;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=1.469;QD=5.14;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:17,8:26:99:173,0,188
5    101575091    rs62370437    C    T    537.02    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.169;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.306;QD=11.93;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=G626;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_101574955_101575092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:23,22:45:99:567,0,747
5    101575241    rs6596424    A    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
5    101585209    rs10067502    G    A    217.13    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=3.802;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.461;QD=18.09;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:5,7:12:99:247,0,155
5    101592742    rs174414    T    C    162.57    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=12.51;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:6,7:13:99:193,0,213
5    101592809    rs261101    T    A    952.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    1/1:0,32:32:75.24:985,75,0
5    101595885    .    T    TGA    460.34    PASS    AC=2;AF=1.00;AN=2;DP=10;FS=0.0;HRun=0;HaplotypeScore=21.8933;IndelType=I;MQ=62.13;MQ0=0;QD=46.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:502,30,0
5    101596032    rs33944821    AAAAT    A    233.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=41.2022;IndelType=D;MQ=66.28;MQ0=0;QD=29.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:276,24,0
5    101606170    rs2600830    T    A    250.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
5    101606518    rs78838022    G    GA    720.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=9;HaplotypeScore=74.2601;IndelType=I;MQ=58.68;MQ0=0;QD=26.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    1/1:3,24:27:69.19:762,69,0
5    101627027    rs841929    T    C    753.13    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.813;DB;DP=72;Dels=0.0;FS=2.131;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.585;QD=10.46;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:42,30:72:99:783,0,1271
5    101627411    rs2600824    C    T    106.65    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.589;QD=13.33;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:2,6:8:62.94:137,0,63
5    101627414    rs2548726    A    T    77.10    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.198;QD=11.01;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:2,5:7:65.47:107,0,65
5    101627435    rs841928    C    G    38.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:68,0,34
5    101631526    rs3114660    C    G    149.76    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=14.98;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:4,6:10:99:180,0,137
5    101631592    rs3114659    A    G    206.95    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.373;QD=8.62;ReadPosRankSum=-0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:11,13:24:99:237,0,272
5    101631761    rs76381196    T    C    682.66    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.446;DB;DP=54;Dels=0.0;FS=3.84;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.095;QD=12.64;ReadPosRankSum=-0.718;SNPEFF_AMINO_ACID_CHANGE=N69S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_101631612_101632253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310954    GT:AD:DP:GQ:PL    0/1:28,26:54:99:713,0,836
5    101709314    rs6596480    T    C    127.55    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.079;QD=6.38;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:13,7:20:99:158,0,454
5    101724307    rs6873305    A    T    317.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.702;QD=17.62;ReadPosRankSum=-1.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:6,12:18:99:347,0,203
5    101726648    rs6874612    C    A    695.46    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=2.833;DB;DP=68;Dels=0.01;FS=4.756;HRun=6;HaplotypeScore=0.9665;MQ=58.99;MQ0=0;MQRankSum=-1.604;QD=10.08;ReadPosRankSum=1.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:41,27:68:99:725,0,1266
5    101726851    rs1452065    A    G    305.81    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.111;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.61;MQ0=0;MQRankSum=-1.82;QD=11.33;ReadPosRankSum=-0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:14,13:27:99:336,0,484
5    101726963    rs1452064    A    G    77.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:107,0,30
5    101755430    rs1542296    T    C    302.51    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.908;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=10.43;ReadPosRankSum=-1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514551    GT:AD:DP:GQ:PL    0/1:17,12:29:99:333,0,618
5    101755879    rs896546    C    T    76    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.2;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:2,3:5:55.37:106,0,55
5    101795490    rs11746217    A    G    474.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.871;DB;DP=44;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=1.933;MQ=59.58;MQ0=0;MQRankSum=-1.211;QD=10.79;ReadPosRankSum=-1.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:24,20:44:99:505,0,796
5    101811346    rs4703232    T    C    531.85    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.394;DB;DP=37;Dels=0.0;FS=3.259;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=14.37;ReadPosRankSum=0.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505407    GT:AD:DP:GQ:PL    0/1:19,17:37:99:562,0,681
5    101813160    rs10041507    T    C    82.70    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=16.54;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:113,0,30
5    101813238    rs10041525    T    C    103.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.3;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:2,4:6:67.28:134,0,67
5    101816104    rs6884141    G    A    1020.69    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.554;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.71;MQ0=0;MQRankSum=0.785;QD=12.92;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=G131;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_101815881_101816138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO6A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379807    GT:AD:DP:GQ:PL    0/1:44,35:79:99:1051,0,1274
5    102310166    rs3733939    G    A    478.76    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.814;DB;DP=27;Dels=0.0;FS=2.944;HRun=1;HaplotypeScore=1.6006;MQ=58.44;MQ0=0;MQRankSum=-1.012;QD=17.73;ReadPosRankSum=-0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274392    GT:AD:DP:GQ:PL    0/1:11,16:27:99:509,0,341
5    102325692    rs12656561    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432578    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:72,0,71
5    102346796    rs72785723    A    G    104.39    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.28;MQ0=0;MQRankSum=-0.825;QD=9.49;ReadPosRankSum=-1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511429    GT:AD:DP:GQ:PL    0/1:5,6:11:99:134,0,160
5    102360747    rs17296280    A    C    281.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=9.39;ReadPosRankSum=-1.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274392    GT:AD:DP:GQ:PL    0/1:20,10:30:99:312,0,699
5    102363623    rs154258    G    A    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274392    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    102363858    rs26433    C    T    1864.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274392    GT:AD:DP:GQ:PL    1/1:0,55:56:99:1897,138,0
5    102364542    rs2067133    A    AAT    1601.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=67.2238;IndelType=I;MQ=58.29;MQ0=0;QD=55.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515456    GT:AD:DP:GQ:PL    1/1:1,28:29:81.28:1643,81,0
5    102494751    rs257292    A    G    281.41    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-1.184;QD=14.81;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIP5K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507921    GT:AD:DP:GQ:PL    0/1:9,10:19:99:311,0,276
5    102537200    rs154290    T    G    589.21    PASS    AB=0.138;AC=1;AF=0.50;AN=2;BaseQRankSum=1.17;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.2;MQ0=0;MQRankSum=0.411;QD=20.32;ReadPosRankSum=-1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIP5K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321521    GT:AD:DP:GQ:PL    0/1:4,25:29:19.22:619,0,19
5    102887841    .    A    G    152.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=15.24;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515407    GT:AD:DP:GQ:PL    0/1:4,6:10:97:182,0,97
5    102891490    rs443022    G    A    277.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508889    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:310,24,0
5    102891545    .    ACT    A    263.42    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.454;DP=17;FS=0.0;HRun=0;HaplotypeScore=66.5831;IndelType=D;MQ=58.9;MQ0=0;MQRankSum=-0.818;QD=15.5;ReadPosRankSum=0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508889    GT:AD:DP:GQ:PL    0/1:9,8:17:99:302,0,457
5    102894673    rs34468716    T    C    1696.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=I217V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_102894580_102895169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507423    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1729,126,0
5    107197420    rs61749621    G    A    383.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.596;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.264;QD=13.69;ReadPosRankSum=1.907;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    0/1:14,14:28:99:413,0,364
5    107197502    rs34990078    G    A    417.70    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=2.74;DB;DP=37;Dels=0.0;FS=1.348;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=11.29;ReadPosRankSum=0.423;SNPEFF_AMINO_ACID_CHANGE=T277;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_107194736_107197561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    0/1:23,14:37:99:448,0,634
5    107197710    rs78569848    G    A    109.11    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.922;QD=15.59;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    0/1:2,5:7:64.95:139,0,65
5    107521677    rs286766    T    C    79.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.81;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:109,0,27
5    107560101    rs2044710    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    107683989    rs3756573    T    A    373.38    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=2.989;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.177;QD=20.74;ReadPosRankSum=1.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    0/1:7,11:18:99:403,0,222
5    107684324    rs1862195    C    T    337.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:371,27,0
5    107700910    rs1828457    T    G    54.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
5    107703446    rs34546708    CAAG    C    586.55    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=4.321;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=146.5818;IndelType=D;MQ=56.81;MQ0=0;MQRankSum=-0.922;QD=17.25;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359660    GT:AD:DP:GQ:PL    0/1:19,15:34:99:626,0,1107
5    107929701    rs113343295    TA    T    137.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DB;DP=12;FS=0.0;HRun=14;HaplotypeScore=65.2588;IndelType=D;MQ=57.29;MQ0=0;MQRankSum=-0.158;QD=11.47;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-120B7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466800    GT:AD:DP:GQ:PL    1/1:1,11:12:4.87:177,5,0
5    108281909    rs34499946    C    G    1700.41    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.617;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.43;MQ0=0;MQRankSum=-1.025;QD=15.05;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=L264V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_108281831_108281923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438717    GT:AD:DP:GQ:PL    0/1:56,57:113:99:1730,0,1760
5    108281997    rs112946339    A    G    581.99    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.014;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.83;MQ=58.84;MQ0=0;MQRankSum=-0.829;QD=14.55;ReadPosRankSum=-0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    0/1:18,22:40:99:612,0,579
5    108290403    rs66958414    GT    G    93.59    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=28.1444;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=9.36;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    0/1:3,7:10:60.20:133,0,60
5    108294979    rs34869483    T    C    920.48    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=58.3;MQ0=0;MQRankSum=1.239;QD=16.74;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=D354;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_108294926_108295048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438717    GT:AD:DP:GQ:PL    0/1:26,29:55:99:950,0,822
5    108295157    rs10638158    A    AAAAG    1120.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=53.1851;IndelType=I;MQ=52.81;MQ0=0;QD=65.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536402    GT:AD:DP:GQ:PL    1/1:3,14:17:45.15:1163,45,0
5    108373066    rs78764938    A    G    244.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.45;MQ0=0;MQRankSum=0.295;QD=16.28;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    0/1:6,9:15:99:274,0,208
5    108373075    rs73779109    A    G    232.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.501;DB;DP=18;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.6651;MQ=58.71;MQ0=0;MQRankSum=-0.618;QD=12.94;ReadPosRankSum=1.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    0/1:9,9:18:99:263,0,326
5    108373106    rs3822684    C    A    802.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:835,60,0
5    108386985    rs2416195    A    T    1781.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=37.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1815,144,0
5    108388047    rs61741032    T    G    1776.31    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.242;MQ=56.66;MQ0=0;MQRankSum=0.257;QD=12.08;ReadPosRankSum=0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    0/1:82,65:147:99:1806,0,2400
5    108388314    rs1177954    A    G    210.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
5    108516629    rs6594349    A    G    994.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1028,75,0
5    108521893    rs78007324    T    C    1588.19    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=1.82;DB;DP=146;Dels=0.0;FS=3.014;HRun=2;HaplotypeScore=2.3565;MQ=59.68;MQ0=0;MQRankSum=-0.703;QD=10.88;ReadPosRankSum=0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    0/1:85,61:146:99:1618,0,2666
5    108522940    rs4957800    C    G    229.74    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.97;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    0/1:3,7:10:94.37:260,0,94
5    108522993    .    A    AG    185.81    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DP=17;FS=0.0;HRun=1;HaplotypeScore=52.1229;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.766;QD=10.93;ReadPosRankSum=1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281092    GT:AD:DP:GQ:PL    0/1:11,6:17:99:225,0,306
5    108523293    rs1133392    A    T    480.36    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DB;DP=26;Dels=0.0;FS=1.941;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.401;QD=18.48;ReadPosRankSum=0.054;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513777    GT:AD:DP:GQ:PL    0/1:9,17:26:99:510,0,262
5    108679870    .    T    TTTAA    472.78    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=43.4715;IndelType=I;MQ=46.99;MQ0=0;QD=59.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361189    GT:AD:DP:GQ:PL    1/1:1,6:8:21.07:515,21,0
5    108680647    rs441798    C    A    536.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361189    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:570,42,0
5    108691738    rs2431253    A    T    1641.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.24;MQ0=0;QD=26.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361189    GT:AD:DP:GQ:PL    1/1:1,60:61:99:1674,138,0
5    108713923    rs148020133    T    C    787.15    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.483;DB;DP=62;Dels=0.0;FS=1.008;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.917;QD=12.7;ReadPosRankSum=-1.129;SNPEFF_AMINO_ACID_CHANGE=Y422C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_108713905_108714955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361189    GT:AD:DP:GQ:PL    0/1:33,29:62:99:817,0,972
5    108713970    rs10042721    C    T    2341.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5149;MQ=59.35;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=E406;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_108713905_108714955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361189    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2374,181,0
5    108713982    rs12523186    T    C    2153.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=A402;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_108713905_108714955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361189    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2186,172,0
5    108714298    rs1045706    T    C    2855.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=30.71;SNPEFF_AMINO_ACID_CHANGE=Q297R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_108713905_108714955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361189    GT:AD:DP:GQ:PL    1/1:1,92:93:99:2889,241,0
5    108717157    rs2288531    T    C    288.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=36.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512822    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
5    108719151    rs1045704    G    A    2085.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.66;MQ0=0;QD=30.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PJA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511624    GT:AD:DP:GQ:PL    1/1:1,67:68:99:2118,156,0
5    109049507    rs12657204    C    G    477.38    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.4089;MQ=56.82;MQ0=0;MQRankSum=1.379;QD=9.18;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    0/1:24,27:52:99:507,0,422
5    109052086    rs17638392    A    G    268.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=22.37;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    0/1:4,8:12:99:298,0,127
5    109103002    rs6862458    G    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    109103566    rs17162179    G    C    152.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=19.01;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    0/1:3,5:8:99:182,0,103
5    109110537    rs6894260    T    A    494.87    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.706;DB;DP=41;Dels=0.0;FS=1.273;HRun=1;HaplotypeScore=0.9987;MQ=59.44;MQ0=0;MQRankSum=-0.85;QD=12.07;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=R415;SNPEFF_CODON_CHANGE=cgT/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_109110489_109110666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    0/1:22,19:41:99:525,0,636
5    109117171    rs13189822    A    G    365.55    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=1.735;QD=7.62;ReadPosRankSum=1.001;SNPEFF_AMINO_ACID_CHANGE=Q483;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_109117097_109117299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    0/1:33,15:48:99:396,0,1121
5    109125072    rs2112212    C    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    109152873    rs112578884    ATATATGTATATG    A    850.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=172.3247;IndelType=D;MQ=48.49;MQ0=0;QD=65.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:892,36,0
5    109155208    rs6594401    A    G    363.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:397,30,0
5    109155787    rs7737286    G    A    290.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502261    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
5    109156184    rs17489649    A    G    189.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=21.05;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502261    GT:AD:DP:GQ:PL    0/1:3,6:9:84.63:219,0,85
5    109159717    rs958235    G    A    175.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502261    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
5    109178316    rs17162326    G    A    259.59    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=25.96;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    0/1:2,8:10:54.14:290,0,54
5    109181387    rs17162341    C    G    78.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
5    109181682    rs3186988    A    T    3513.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=59.83;MQ0=0;QD=32.84;SNPEFF_AMINO_ACID_CHANGE=S939;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_109181566_109181707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3514,259,0
5    109183341    rs11241041    G    T    30.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.11;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    0/1:3,2:5:60.54:61,0,112
5    109190935    rs71929671    TCTC    T    922.40    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=4.893;DB;DP=48;FS=11.237;HRun=0;HaplotypeScore=194.1876;IndelType=D;MQ=59.1;MQ0=0;MQRankSum=1.264;QD=19.22;ReadPosRankSum=0.781;SNPEFF_AMINO_ACID_CHANGE=FS1024F;SNPEFF_CODON_CHANGE=ttctcc/ttc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_5_109190841_109191035;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261483    GT:AD:DP:GQ:PL    0/1:26,22:48:99:961,0,1493
5    109940707    rs6897672    G    T    243.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=13.51;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM232;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429839    GT:AD:DP:GQ:PL    0/1:10,8:18:99:273,0,357
5    109960960    rs72771461    T    C    798.70    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.46;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=60.0;MQ0=0;MQRankSum=-0.262;QD=12.88;ReadPosRankSum=-0.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM232;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511883    GT:AD:DP:GQ:PL    0/1:34,28:62:99:829,0,1035
5    109960989    rs61730920    A    G    1097.66    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.083;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.44;ReadPosRankSum=-1.94;SNPEFF_AMINO_ACID_CHANGE=Y249;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_109960968_109961134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM232;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429839    GT:AD:DP:GQ:PL    0/1:40,36:76:99:1128,0,1196
5    109963430    rs6886702    A    C    198.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=19.88;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM232;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429839    GT:AD:DP:GQ:PL    0/1:4,6:10:99:229,0,127
5    109973902    rs1422495    T    G    479.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.308;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5439;MQ=59.34;MQ0=0;MQRankSum=0.62;QD=13.7;ReadPosRankSum=-0.827;SNPEFF_AMINO_ACID_CHANGE=A166;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_109973899_109974056;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM232;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429839    GT:AD:DP:GQ:PL    0/1:17,17:35:99:510,0,488
5    110079450    rs17446534    T    C    311.24    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=29;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=10.73;ReadPosRankSum=-0.153;SNPEFF_AMINO_ACID_CHANGE=L116;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_110079431_110079488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC25A46;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355943    GT:AD:DP:GQ:PL    0/1:16,13:29:99:341,0,545
5    110092415    .    G    T    584.71    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.05;MQ0=0;MQRankSum=0.074;QD=11.93;ReadPosRankSum=1.16;SNPEFF_AMINO_ACID_CHANGE=V121L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_110092402_110092459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC25A46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509442    GT:AD:DP:GQ:PL    0/1:25,24:49:99:615,0,678
5    110284652    rs73787831    A    G    538.88    PASS    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=3.229;DB;DP=99;Dels=0.0;FS=3.316;HRun=1;HaplotypeScore=0.8941;MQ=51.87;MQ0=0;MQRankSum=-5.616;QD=5.44;ReadPosRankSum=1.407;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:62,37:99:99:569,0,2097
5    110284665    rs79180940    A    G    513.82    PASS    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=3.6;DB;DP=91;Dels=0.0;FS=3.558;HRun=0;HaplotypeScore=1.81;MQ=51.92;MQ0=1;MQRankSum=-5.668;QD=5.65;ReadPosRankSum=1.666;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:57,34:91:99:544,0,2042
5    110284728    rs79765499    A    G    94.30    QDFilter2    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.515;DB;DP=61;Dels=0.0;FS=3.536;HRun=1;HaplotypeScore=0.734;MQ=55.86;MQ0=1;MQRankSum=-2.185;QD=1.55;ReadPosRankSum=-1.966;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:47,14:61:99:124,0,1585
5    110284775    rs73222496    C    A    311.87    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=4.069;DB;DP=74;Dels=0.0;FS=4.169;HRun=0;HaplotypeScore=0.5784;MQ=54.09;MQ0=0;MQRankSum=-2.926;QD=4.21;ReadPosRankSum=1.931;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:49,25:74:99:342,0,1533
5    110284825    rs73222499    A    G    92.26    QDFilter2    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=77;Dels=0.0;FS=11.365;HRun=2;HaplotypeScore=3.9884;MQ=53.55;MQ0=2;MQRankSum=-5.269;QD=1.2;ReadPosRankSum=-1.444;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:56,21:77:99:122,0,1874
5    110285471    rs78163547    T    TA    457.31    PASS    AB=0.751;AC=1;AF=0.50;AN=2;BaseQRankSum=6.649;DB;DP=112;FS=2.11;HRun=1;HaplotypeScore=391.6937;IndelType=I;MQ=51.76;MQ0=4;MQRankSum=-2.509;QD=3.29;ReadPosRankSum=-2.259;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:93,46:112:99:496,0,3109
5    110285507    rs78426986    T    C    89.51    QDFilter2    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.166;DB;DP=95;Dels=0.0;FS=1.698;HRun=0;HaplotypeScore=1.5757;MQ=53.31;MQ0=2;MQRankSum=-5.445;QD=0.94;ReadPosRankSum=2.268;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:69,26:95:99:120,0,2393
5    110285508    rs76961056    T    C    81.96    QDFilter2    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=1.948;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5757;MQ=53.35;MQ0=2;MQRankSum=-4.868;QD=0.9;ReadPosRankSum=1.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:67,24:91:99:112,0,2294
5    110285521    rs74738084    T    C    62.12    QDFilter2    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.698;DB;DP=81;Dels=0.0;FS=4.778;HRun=0;HaplotypeScore=0.8667;MQ=52.18;MQ0=2;MQRankSum=-5.063;QD=0.77;ReadPosRankSum=0.241;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2089O24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505813    GT:AD:DP:GQ:PL    0/1:56,25:81:92.12:92,0,1948
5    110409067    rs2289277    C    G    357.70    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.16;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.67;QD=14.9;ReadPosRankSum=0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSLP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344895    GT:AD:DP:GQ:PL    0/1:9,15:24:99:388,0,297
5    110679557    rs34695470    TAA    T    435.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=11;HaplotypeScore=69.1589;IndelType=D;MQ=60.63;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,15:15:45.11:477,45,0
5    110679657    rs446176    C    G    3027.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.13;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,83:83:99:3061,223,0
5    110679873    rs387238    G    A    933.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:967,75,0
5    110710360    rs306067    G    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    110710699    rs11385106    A    AG    336.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=16.3604;IndelType=I;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:378,27,0
5    110712491    rs306129    A    G    2048.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2081,160,0
5    110730557    rs523389    C    T    570.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=35.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508074    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:603,45,0
5    110782274    rs3797739    C    A    341.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:374,27,0
5    110782634    rs34007984    T    G    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
5    110784822    rs2116824    A    G    950.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,28:29:72.23:983,72,0
5    110808813    rs2067314    A    AC    294.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=23.531;IndelType=I;MQ=60.0;MQ0=0;QD=42.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:336,21,0
5    110808849    rs25917    A    G    52.16    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.143;QD=4.35;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    0/1:7,5:12:82.15:82,0,223
5    110819621    rs25924    G    A    343.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514007    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:377,27,0
5    110819753    rs25925    G    C    1517.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.41;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=S337;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_110819724_110830584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282356    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1550,120,0
5    111479750    rs62372418    T    C    99.35    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=11.04;ReadPosRankSum=0.876;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507810    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,185
5    111497358    rs3816657    T    G    515.24    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-1.882;QD=18.4;ReadPosRankSum=-0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:11,17:28:99:545,0,366
5    111500816    .    C    CTAAAA    3868.22    PASS    AC=2;AF=1.00;AN=2;DP=56;FS=0.0;HRun=0;HaplotypeScore=317.7861;IndelType=I;MQ=47.07;MQ0=0;QD=69.08;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    1/1:31,23:56:99:3868,135,0
5    111500822    rs3067634    T    TAAA    2016.99    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DB;DP=54;FS=5.666;HRun=4;HaplotypeScore=392.7547;IndelType=I;MQ=47.25;MQ0=0;MQRankSum=-0.328;QD=37.35;ReadPosRankSum=1.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515047    GT:AD:DP:GQ:PL    0/1:36,18:54:72.16:2056,0,72
5    111500824    rs33929905    T    TAC    1082.12    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.674;DB;DP=54;FS=1.097;HRun=0;HaplotypeScore=447.611;IndelType=I;MQ=46.99;MQ0=0;MQRankSum=-4.057;QD=20.04;ReadPosRankSum=0.651;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515047    GT:AD:DP:GQ:PL    0/1:36,18:54:99:1121,0,406
5    111500824    rs78027176    T    C    45.58    HaplotypeScoreFilter13;QDFilter2    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=53;Dels=0.0;FS=3.086;HRun=0;HaplotypeScore=52.9321;MQ=46.98;MQ0=0;MQRankSum=-1.322;QD=0.86;ReadPosRankSum=-3.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515047    GT:AD:DP:GQ:PL    0/1:42,11:53:75.57:76,0,592
5    111504479    rs7703522    C    T    419.51    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.612;DB;DP=50;Dels=0.0;FS=2.527;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.905;QD=8.39;ReadPosRankSum=0.925;SNPEFF_AMINO_ACID_CHANGE=R630H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_111504436_111504517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:34,16:50:99:450,0,1057
5    111505885    rs1560052    T    G    45.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=5.08;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:5,4:9:75.73:76,0,179
5    111506069    rs10040749    G    A    186.29    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=10.96;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:9,8:17:99:216,0,255
5    111519740    rs1560058    T    C    663.32    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.824;DB;DP=61;Dels=0.0;FS=0.974;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=0.547;QD=10.87;ReadPosRankSum=0.168;SNPEFF_AMINO_ACID_CHANGE=N532S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_111519713_111519832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:35,26:61:99:693,0,1156
5    111530284    rs7719346    A    G    421.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DB;DP=51;Dels=0.0;FS=2.653;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.51;QD=8.26;ReadPosRankSum=-1.089;SNPEFF_AMINO_ACID_CHANGE=Y495H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_111530265_111530342;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:34,17:51:99:451,0,959
5    111540950    rs12658467    C    T    647.03    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=50;Dels=0.02;FS=0.0;HRun=2;HaplotypeScore=2.5981;MQ=59.55;MQ0=0;MQRankSum=0.428;QD=12.69;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:27,23:50:99:677,0,960
5    111540968    rs76338745    T    TC    1100.03    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=3.294;DB;DP=70;FS=0.0;HRun=4;HaplotypeScore=239.1235;IndelType=I;MQ=60.29;MQ0=0;MQRankSum=1.259;QD=15.71;ReadPosRankSum=-0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:37,33:70:99:1139,0,1049
5    111545670    rs890757    C    G    1207.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.803;QD=13.27;ReadPosRankSum=1.15;SNPEFF_AMINO_ACID_CHANGE=S366T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_111545589_111545679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:49,42:91:99:1237,0,1618
5    111611076    rs12521830    A    G    330.52    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DB;DP=15;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.65;QD=22.03;ReadPosRankSum=-0.65;SNPEFF_AMINO_ACID_CHANGE=F94;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_111611023_111611101;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261486    GT:AD:DP:GQ:PL    0/1:3,12:15:85.51:361,0,86
5    111754851    rs3749742    C    G    35.47    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=4.43;ReadPosRankSum=-1.221;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPB41L4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305368    GT:AD:DP:GQ:PL    0/1:5,3:8:65.46:65,0,124
5    112116632    rs2909961    C    T    196.38    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=21.82;ReadPosRankSum=-1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257430    GT:AD:DP:GQ:PL    0/1:2,7:9:26.27:226,0,26
5    112154544    rs138003874    C    CG    238.92    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=30;FS=0.0;HRun=8;HaplotypeScore=223.8356;IndelType=I;MQ=53.52;MQ0=0;MQRankSum=-2.464;QD=7.96;ReadPosRankSum=-1.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257430    GT:AD:DP:GQ:PL    0/1:24,5:30:99:278,0,327
5    112162854    rs2229992    T    C    518.52    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.941;DB;DP=28;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.297;QD=18.52;ReadPosRankSum=0.381;SNPEFF_AMINO_ACID_CHANGE=Y468;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112162805_112162944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507379    GT:AD:DP:GQ:PL    0/1:8,20:28:99:549,0,208
5    112164561    rs351771    G    A    480.92    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.54;DB;DP=46;Dels=0.0;FS=2.776;HRun=1;HaplotypeScore=2.5452;MQ=58.99;MQ0=0;MQRankSum=1.089;QD=10.45;ReadPosRankSum=-1.112;SNPEFF_AMINO_ACID_CHANGE=A527;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112164553_112164669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507379    GT:AD:DP:GQ:PL    0/1:28,18:46:99:511,0,799
5    112175770    rs41115    G    A    887.63    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.663;DB;DP=60;Dels=0.0;FS=2.1;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.302;QD=14.79;ReadPosRankSum=1.45;SNPEFF_AMINO_ACID_CHANGE=T1493;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112173250_112181936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257430    GT:AD:DP:GQ:PL    0/1:31,29:60:99:918,0,1001
5    112176325    rs42427    G    A    781.97    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.575;DB;DP=51;Dels=0.0;FS=2.422;HRun=0;HaplotypeScore=0.8667;MQ=59.63;MQ0=0;MQRankSum=1.065;QD=15.33;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=G1678;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112173250_112181936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257430    GT:AD:DP:GQ:PL    0/1:25,26:51:99:812,0,773
5    112176559    rs866006    T    G    936.55    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.897;DB;DP=53;Dels=0.0;FS=2.541;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.496;QD=17.67;ReadPosRankSum=-1.164;SNPEFF_AMINO_ACID_CHANGE=S1756;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112173250_112181936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257430    GT:AD:DP:GQ:PL    0/1:22,31:53:99:967,0,766
5    112176756    rs459552    T    A    827.56    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=0.73;DB;DP=37;Dels=0.0;FS=1.374;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.698;QD=22.37;ReadPosRankSum=-0.503;SNPEFF_AMINO_ACID_CHANGE=V1822D;SNPEFF_CODON_CHANGE=gTc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112173250_112181936;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257430    GT:AD:DP:GQ:PL    0/1:12,25:37:99:858,0,325
5    112177171    rs465899    G    A    789.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.018;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.901;QD=15.47;ReadPosRankSum=1.261;SNPEFF_AMINO_ACID_CHANGE=P1960;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112173250_112181936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257430    GT:AD:DP:GQ:PL    0/1:25,25:51:99:819,0,717
5    112196949    rs460137    A    C    554.45    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=19.8;ReadPosRankSum=-0.728;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503445    GT:AD:DP:GQ:PL    0/1:10,18:28:99:584,0,317
5    112199974    rs351769    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282999    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    112200028    rs351768    T    A    367.29    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=30.61;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282999    GT:AD:DP:GQ:PL    0/1:1,11:12:5.64:397,0,6
5    112200098    rs351767    A    G    850.18    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=1.93;DB;DP=37;Dels=0.0;FS=2.703;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=2.644;QD=22.98;ReadPosRankSum=-1.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282999    GT:AD:DP:GQ:PL    0/1:12,25:37:99:880,0,384
5    112222694    rs712662    C    G    556.17    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.59;MQ0=0;MQRankSum=-1.927;QD=12.09;ReadPosRankSum=0.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474542    GT:AD:DP:GQ:PL    0/1:24,22:46:99:586,0,712
5    112227799    rs712665    A    G    1345.17    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=3.02;DB;DP=89;Dels=0.0;FS=10.801;HRun=1;HaplotypeScore=0.9665;MQ=56.73;MQ0=0;MQRankSum=-0.777;QD=15.11;ReadPosRankSum=-0.123;SNPEFF_AMINO_ACID_CHANGE=S155G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112227313_112228791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391338    GT:AD:DP:GQ:PL    0/1:43,45:89:99:1375,0,1322
5    112227939    rs712666    T    C    1508.55    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=128;Dels=0.0;FS=0.674;HRun=1;HaplotypeScore=2.2426;MQ=54.96;MQ0=0;MQRankSum=-4.197;QD=11.79;ReadPosRankSum=0.272;SNPEFF_AMINO_ACID_CHANGE=S201;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112227313_112228791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391338    GT:AD:DP:GQ:PL    0/1:69,59:128:99:1539,0,2200
5    112228667    rs430665    G    A    577.97    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.374;DB;DP=36;Dels=0.0;FS=13.426;HRun=1;HaplotypeScore=0.9469;MQ=52.65;MQ0=0;MQRankSum=1.027;QD=16.05;ReadPosRankSum=1.765;SNPEFF_AMINO_ACID_CHANGE=S444N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112227313_112228791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391338    GT:AD:DP:GQ:PL    0/1:15,21:36:99:608,0,464
5    112228765    rs459102    C    A    157.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.719;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9738;MQ=49.69;MQ0=0;MQRankSum=-0.379;QD=4.78;ReadPosRankSum=-0.087;SNPEFF_AMINO_ACID_CHANGE=Q477K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112227313_112228791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391338    GT:AD:DP:GQ:PL    0/1:22,11:33:99:188,0,520
5    112228791    rs3068792    TAAAAA    T    106.21    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=0.35;DB;DP=27;FS=0.0;HRun=23;HaplotypeScore=257.8264;IndelType=D;MQ=45.99;MQ0=0;MQRankSum=-2.219;QD=3.93;ReadPosRankSum=1.907;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503445    GT:AD:DP:GQ:PL    0/1:15,6:27:99:145,0,852
5    112238039    rs153546    A    C    558.18    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.446;DB;DP=46;Dels=0.0;FS=4.736;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.875;QD=12.13;ReadPosRankSum=-0.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261482    GT:AD:DP:GQ:PL    0/1:26,20:46:99:588,0,802
5    112257908    rs153556    T    C    93.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=57.87;MQ0=0;MQRankSum=-2.017;QD=8.46;ReadPosRankSum=0.421;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261482    GT:AD:DP:GQ:PL    0/1:4,6:11:99:123,0,140
5    112312676    rs33555    T    C    2569.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=31.72;SNPEFF_AMINO_ACID_CHANGE=F16L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112312433_112312683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389063    GT:AD:DP:GQ:PL    1/1:0,80:81:99:2602,199,0
5    112328377    rs3733969    A    G    672.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=L114;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112328369_112328467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389063    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:705,51,0
5    112336634    rs17312754    T    C    133.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389063    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
5    112343544    rs2052484    G    A    251.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389063    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
5    112346416    .    ATG    A    727.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.815;DP=45;FS=0.0;HRun=0;HaplotypeScore=319.6784;IndelType=D;MQ=54.31;MQ0=0;MQRankSum=-1.733;QD=16.17;ReadPosRankSum=0.714;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508359    GT:AD:DP:GQ:PL    1/1:39,6:45:95.67:770,96,0
5    112346431    rs58980024    TG    T    1347.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.374;DB;DP=50;FS=0.0;HRun=1;HaplotypeScore=324.0499;IndelType=D;MQ=51.88;MQ0=1;MQRankSum=1.104;QD=24.96;ReadPosRankSum=1.697;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508359    GT:AD:DP:GQ:PL    1/1:24,30:50:99:1390,113,0
5    112349070    rs9326869    T    C    2440.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.4;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=A173;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112349018_112349546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543319    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2473,190,0
5    112349379    rs4705749    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389063    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    112362840    rs1549181    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408903    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    112364945    rs1363333    A    G    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
5    112379095    rs4277906    T    C    41.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    112379289    rs2227948    G    A    396.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.5;SNPEFF_AMINO_ACID_CHANGE=A645;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112379227_112379327;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515367    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:429,33,0
5    112379434    rs4705755    T    A    84.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
5    112384802    rs6594664    G    A    2396.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.27;MQ0=0;QD=28.19;SNPEFF_AMINO_ACID_CHANGE=D628;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112384790_112384996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515367    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2429,184,0
5    112385035    rs7708603    T    G    220.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:254,18,0
5    112389293    rs4295378    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=63.51;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
5    112389747    rs4705536    C    G    747.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:780,60,0
5    112399791    rs2227947    G    A    726.42    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=48;Dels=0.0;FS=1.15;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.763;QD=15.13;ReadPosRankSum=0.303;SNPEFF_AMINO_ACID_CHANGE=N448;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112399681_112399864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515367    GT:AD:DP:GQ:PL    0/1:20,28:48:99:756,0,516
5    112399934    rs10477486    C    G    339.58    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.474;DB;DP=28;Dels=0.0;FS=4.925;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.507;QD=12.13;ReadPosRankSum=1.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    0/1:13,15:28:99:370,0,409
5    112400040    rs4705538    C    A    177.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:210,15,0
5    112406718    rs4705771    A    G    1076.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.57;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,29:29:84.26:1109,84,0
5    112406785    rs150911794    G    GCCTCGCGCTGTCTT    4175.86    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.008;DB;DP=65;FS=2.445;HRun=0;HaplotypeScore=677.0541;IndelType=I;MQ=52.58;MQ0=0;MQRankSum=-5.457;QD=64.24;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    0/1:46,11:65:99:4176,0,4712
5    112406862    rs2227950    G    A    745.88    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.591;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.21;MQ0=0;MQRankSum=-2.646;QD=8.78;ReadPosRankSum=-0.468;SNPEFF_AMINO_ACID_CHANGE=A365;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112406791_112406931;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515367    GT:AD:DP:GQ:PL    0/1:56,29:85:99:776,0,1707
5    112418385    rs10058407    C    T    138.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.198;QD=19.78;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    0/1:2,5:7:62.92:168,0,63
5    112439759    rs13173830    T    G    529.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:562,42,0
5    112439941    rs6594681    T    C    3471.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.61;MQ0=0;QD=29.67;SNPEFF_AMINO_ACID_CHANGE=K127R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112439889_112440052;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000515367    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3472,271,0
5    112479004    rs6890140    T    C    845.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_AMINO_ACID_CHANGE=T12;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112478915_112479057;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515367    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:878,69,0
5    112487137    rs1947026    A    C    282.15    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.898;DB;DP=18;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.906;QD=15.67;ReadPosRankSum=-2.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    0/1:7,11:18:99:312,0,247
5    112487287    rs2165930    G    C    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    112629887    rs485210    C    T    151.64    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=8.92;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302475    GT:AD:DP:GQ:PL    0/1:10,7:17:99:182,0,360
5    112676191    rs10900684    A    G    492.23    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=36;Dels=0.0;FS=1.512;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=13.67;ReadPosRankSum=-1.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408903    GT:AD:DP:GQ:PL    0/1:17,19:36:99:522,0,551
5    112720648    rs17327526    C    A    277.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.095;QD=8.42;ReadPosRankSum=-1.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408903    GT:AD:DP:GQ:PL    0/1:22,11:33:99:308,0,736
5    112823998    rs348943    C    T    341.34    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=0.395;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.52;MQ0=0;MQRankSum=0.395;QD=15.52;ReadPosRankSum=-1.184;SNPEFF_AMINO_ACID_CHANGE=E38;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112823942_112824527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408903    GT:AD:DP:GQ:PL    0/1:7,15:22:99:371,0,175
5    112824039    rs348942    T    C    346.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9222;MQ=53.03;MQ0=0;QD=16.5;SNPEFF_AMINO_ACID_CHANGE=S25G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112823942_112824527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408903    GT:AD:DP:GQ:PL    1/1:1,20:21:30.09:380,30,0
5    112824048    .    T    TGCC    256.98    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DP=20;FS=6.154;HRun=0;HaplotypeScore=210.994;IndelType=I;MQ=52.65;MQ0=0;MQRankSum=0.387;QD=12.85;ReadPosRankSum=1.186;SNPEFF_AMINO_ACID_CHANGE=G21GA;SNPEFF_CODON_CHANGE=ggc/ggGGCc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_5_112823942_112824527;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408903    GT:AD:DP:GQ:PL    0/1:13,7:20:99:296,0,153
5    112824166    rs348941    G    C    330.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511242    GT:AD:DP:GQ:PL    1/1:0,11:11:30.06:364,30,0
5    112849801    rs1862315    A    C    68.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.77;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:4,3:7:98.41:98,0,103
5    112849823    rs2416281    C    T    62.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.49;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:3,3:6:66.71:93,0,67
5    112851109    rs1820057    A    G    554.81    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.066;DB;DP=30;Dels=0.0;FS=5.539;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=18.49;ReadPosRankSum=1.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:11,19:30:99:585,0,364
5    112851121    rs1035408    C    T    538.59    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=3.505;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=20.72;ReadPosRankSum=0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:10,16:26:99:569,0,290
5    112868693    rs6594732    C    A    486.76    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=3.556;DB;DP=46;Dels=0.0;FS=2.836;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=-1.008;QD=10.58;ReadPosRankSum=0.521;SNPEFF_AMINO_ACID_CHANGE=R175;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112868576_112868742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511372    GT:AD:DP:GQ:PL    0/1:27,19:46:99:517,0,792
5    112868878    rs6594733    A    G    40.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.09;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:2,3:5:69.73:70,0,70
5    112876584    rs3936061    C    A    155.68    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=22.24;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:1,6:7:14.44:186,0,14
5    112876889    rs113432254    ATT    A    84.16    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=34;FS=0.0;HRun=17;HaplotypeScore=287.0994;IndelType=D;MQ=53.93;MQ0=0;MQRankSum=1.032;QD=2.48;ReadPosRankSum=2.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:22,9:34:99:123,0,256
5    112884197    rs4444963    C    G    492.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=30;Dels=0.0;FS=3.163;HRun=0;HaplotypeScore=2.3839;MQ=60.0;MQ0=0;MQRankSum=0.954;QD=16.41;ReadPosRankSum=0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:15,15:30:99:522,0,451
5    112884380    rs6889574    G    A    716.99    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=48;Dels=0.0;FS=2.722;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.103;QD=14.94;ReadPosRankSum=1.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:25,23:48:99:747,0,778
5    112884594    rs6889501    A    G    250.56    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.171;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.463;QD=10.44;ReadPosRankSum=-1.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:13,11:24:99:281,0,467
5    112884728    rs4639215    G    A    466.05    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=35;Dels=0.0;FS=5.78;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=-0.314;QD=13.32;ReadPosRankSum=-0.809;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:17,18:35:99:496,0,499
5    112884752    rs6594734    G    A    239.59    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.409;QD=10.42;ReadPosRankSum=1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:14,9:23:99:270,0,470
5    112889065    rs60871281    G    A    257.91    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.778;QD=9.92;ReadPosRankSum=0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:15,11:26:99:288,0,402
5    112889374    rs10071816    G    A    793.82    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.166;QD=16.2;ReadPosRankSum=0.145;SNPEFF_AMINO_ACID_CHANGE=S562N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112889287_112889383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511372    GT:AD:DP:GQ:PL    0/1:22,27:49:99:824,0,672
5    112889566    rs34947411    ATCT    A    775.43    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=5.535;DB;DP=52;FS=1.172;HRun=0;HaplotypeScore=265.1689;IndelType=D;MQ=57.72;MQ0=0;MQRankSum=-0.584;QD=14.91;ReadPosRankSum=0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:32,20:52:99:814,0,1846
5    112889608    rs10079758    T    A    593.84    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.851;DB;DP=54;Dels=0.0;FS=4.461;HRun=0;HaplotypeScore=0.0;MQ=57.36;MQ0=0;MQRankSum=-1.802;QD=11.0;ReadPosRankSum=-0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:31,23:54:99:624,0,1097
5    112889821    rs140119986    CCTCTA    C    305.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=72.4082;IndelType=D;MQ=51.13;MQ0=0;MQRankSum=-2.281;QD=21.84;ReadPosRankSum=-1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:8,6:14:99:345,0,619
5    112892000    rs2162842    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:73,0,29
5    112899250    rs6886199    G    A    743.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.99;DB;DP=49;Dels=0.0;FS=1.454;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=15.18;ReadPosRankSum=-0.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503857    GT:AD:DP:GQ:PL    0/1:21,28:49:99:774,0,676
5    112899300    rs6867181    T    A    210.93    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.064;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.55;ReadPosRankSum=-0.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503857    GT:AD:DP:GQ:PL    0/1:11,9:20:99:241,0,393
5    112899301    rs6886338    G    A    203.13    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.595;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=10.16;ReadPosRankSum=-0.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503857    GT:AD:DP:GQ:PL    0/1:11,9:20:99:233,0,390
5    112899702    rs6886628    A    G    1178.95    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.577;DB;DP=78;Dels=0.0;FS=11.611;HRun=0;HaplotypeScore=0.9159;MQ=59.41;MQ0=0;MQRankSum=-0.536;QD=15.11;ReadPosRankSum=-0.74;SNPEFF_AMINO_ACID_CHANGE=T773;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112899556_112899828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511372    GT:AD:DP:GQ:PL    0/1:36,41:78:99:1209,0,1059
5    112899876    rs11241214    G    A    353.98    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.694;QD=13.61;ReadPosRankSum=-1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503857    GT:AD:DP:GQ:PL    0/1:14,12:26:99:384,0,443
5    112901494    rs3763139    G    C    223.20    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.312;QD=17.17;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503857    GT:AD:DP:GQ:PL    0/1:6,7:13:99:253,0,187
5    112915077    rs10063008    C    T    154.75    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.79;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:1,5:6:23.70:185,0,24
5    112917278    rs11748794    T    G    642.48    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.51;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9092;MQ=60.0;MQ0=0;MQRankSum=2.23;QD=13.11;ReadPosRankSum=0.87;SNPEFF_AMINO_ACID_CHANGE=S1083;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112917114_112917406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000511372    GT:AD:DP:GQ:PL    0/1:24,25:49:99:672,0,782
5    112919941    rs2288449    G    A    233.07    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.152;QD=11.1;ReadPosRankSum=-0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506333    GT:AD:DP:GQ:PL    0/1:12,9:21:99:263,0,393
5    112926982    rs2303717    A    G    303.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.134;DB;DP=30;Dels=0.0;FS=2.741;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.034;QD=10.13;ReadPosRankSum=0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:20,10:30:99:334,0,663
5    112927888    rs113314175    A    ATT    229.55    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=3.824;DB;DP=31;FS=5.519;HRun=11;HaplotypeScore=152.2713;IndelType=I;MQ=56.74;MQ0=0;MQRankSum=-0.579;QD=7.4;ReadPosRankSum=-1.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161863    GT:AD:DP:GQ:PL    0/1:22,5:31:99:269,0,308
5    112928865    rs3763138    G    T    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507567    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,103
5    112929013    rs1132528    T    A    411.40    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=42;Dels=0.0;FS=4.84;HRun=0;HaplotypeScore=2.3249;MQ=58.89;MQ0=0;MQRankSum=-1.125;QD=9.8;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=L1319Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_112929000_112929087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YTHDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511372    GT:AD:DP:GQ:PL    0/1:24,17:42:99:441,0,751
5    113697587    rs36945    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512097    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    113698544    rs40179    G    C    64.76    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.396;QD=3.6;ReadPosRankSum=1.981;SNPEFF_AMINO_ACID_CHANGE=L24;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_113698016_113698958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264773    GT:AD:DP:GQ:PL    0/1:14,4:18:94.75:95,0,452
5    113829121    rs1841251    A    G    1961.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.65;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=E120;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_113829100_113829169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503706    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1995,147,0
5    114462355    rs2974617    C    T    1149.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=D523N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_114462200_114462554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000514154    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1182,87,0
5    114462589    rs2921623    A    C    1060.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282369    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1094,84,0
5    114466145    rs6866580    C    T    409.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282369    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:443,33,0
5    114611356    rs267295    A    C    299.77    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.162;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.81;QD=14.27;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379611    GT:AD:DP:GQ:PL    0/1:11,10:21:99:330,0,388
5    114848789    rs11740361    C    T    1543.92    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=3.126;DB;DP=86;Dels=0.0;FS=2.054;HRun=0;HaplotypeScore=0.9159;MQ=59.46;MQ0=0;MQRankSum=-0.048;QD=17.95;ReadPosRankSum=0.891;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CCT5P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502314    GT:AD:DP:GQ:PL    0/1:38,48:86:99:1574,0,1027
5    115141009    rs140299210    A    G    236.16    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=16.87;ReadPosRankSum=-0.133;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502631    GT:AD:DP:GQ:PL    0/1:5,9:14:99:266,0,164
5    115167595    rs3215095    CT    C    173.94    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;FS=2.276;HRun=4;HaplotypeScore=32.893;IndelType=D;MQ=59.06;MQ0=0;MQRankSum=-0.935;QD=13.38;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274459    GT:AD:DP:GQ:PL    0/1:6,7:13:99:213,0,212
5    115177014    rs26537    T    C    286.35    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=18;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.644;QD=15.91;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274459    GT:AD:DP:GQ:PL    0/1:8,10:18:99:316,0,241
5    115196792    rs174046    A    G    210.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.627;QD=15.03;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316788    GT:AD:DP:GQ:PL    0/1:6,8:14:99:240,0,207
5    115196878    rs114154867    G    C    1038.50    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=61;Dels=0.0;FS=2.86;HRun=0;HaplotypeScore=0.8667;MQ=58.86;MQ0=0;MQRankSum=-0.717;QD=17.02;ReadPosRankSum=2.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316788    GT:AD:DP:GQ:PL    0/1:29,31:61:99:1068,0,846
5    115249078    rs7733604    C    T    316.23    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.276;DB;DP=93;Dels=0.0;FS=1.015;HRun=0;HaplotypeScore=0.9159;MQ=53.35;MQ0=0;MQRankSum=-5.299;QD=3.4;ReadPosRankSum=-3.144;SNPEFF_AMINO_ACID_CHANGE=P158L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115249059_115249778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316788    GT:AD:DP:GQ:PL    0/1:65,28:93:99:346,0,2061
5    115249271    rs3879477    G    A    429.93    MQFilter40    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.345;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4725;MQ=35.65;MQ0=0;MQRankSum=0.23;QD=11.62;ReadPosRankSum=-1.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506430    GT:AD:DP:GQ:PL    0/1:16,21:37:99:460,0,297
5    115298232    rs9326980    G    C    435.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=29.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379578    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:468,36,0
5    115298378    rs10062297    C    T    700.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=29.2;SNPEFF_AMINO_ACID_CHANGE=L22;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115298191_115299009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    1/1:0,23:24:54.18:734,54,0
5    115298475    rs12520255    T    C    628.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=L54S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115298191_115299009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    1/1:0,21:21:54.11:662,54,0
5    115298518    rs12522632    A    G    679    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.14;MQ0=0;QD=21.22;SNPEFF_AMINO_ACID_CHANGE=P68;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115298191_115299009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    1/1:0,32:32:57.17:712,57,0
5    115298977    rs1445708    C    T    240.80    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.688;QD=8.3;ReadPosRankSum=0.504;SNPEFF_AMINO_ACID_CHANGE=F210;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115298798_115299009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379578    GT:AD:DP:GQ:PL    0/1:16,13:29:99:271,0,466
5    115323489    rs10519436    T    C    899.31    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=51;Dels=0.0;FS=4.492;HRun=1;HaplotypeScore=1.9258;MQ=60.0;MQ0=0;MQRankSum=-2.344;QD=17.63;ReadPosRankSum=-1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    0/1:20,31:51:99:929,0,663
5    115323724    rs10519437    A    G    451.99    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.96;DB;DP=37;Dels=0.0;FS=4.167;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.691;QD=12.22;ReadPosRankSum=0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    0/1:20,17:37:99:482,0,691
5    115323784    rs17138567    A    G    143.59    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=11.05;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    0/1:8,5:13:99:174,0,265
5    115323806    rs7736859    T    C    202.97    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=16.91;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    0/1:5,7:12:99:233,0,155
5    115336862    rs7712021    T    C    561.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.274;DB;DP=54;Dels=0.0;FS=2.566;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.645;QD=10.41;ReadPosRankSum=-1.541;SNPEFF_AMINO_ACID_CHANGE=N571;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115336764_115336936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379578    GT:AD:DP:GQ:PL    0/1:30,24:54:99:592,0,988
5    115338704    rs1346479    T    C    102.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=57.28;MQ0=0;MQRankSum=-0.55;QD=14.67;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    0/1:3,4:7:90.88:133,0,91
5    115338732    rs1560080    G    A    246.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
5    115339086    rs6594929    A    G    1233.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    1/1:0,37:37:93.29:1267,93,0
5    115339265    rs2018850    G    T    32.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:64,6,0
5    115341611    rs10078748    G    T    1717.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=A197;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115341609_115341664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395528    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1750,126,0
5    115341638    rs10078759    G    C    1751.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=L206F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115341609_115341664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395528    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1785,129,0
5    115346728    rs1366204    G    A    50.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=-1.231;QD=10.1;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395528    GT:AD:DP:GQ:PL    0/1:2,3:5:66.51:80,0,67
5    115348341    rs7726801    A    G    76.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.69;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395528    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,105
5    115351498    rs17485148    C    T    701.20    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=35;Dels=0.0;FS=1.939;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.338;QD=20.03;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    0/1:12,23:35:99:731,0,357
5    115358190    rs7714138    C    T    624.82    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=58;Dels=0.0;FS=1.382;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.719;QD=10.77;ReadPosRankSum=0.687;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503203    GT:AD:DP:GQ:PL    0/1:34,24:58:99:655,0,1127
5    115365404    rs2115038    T    C    39.39    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.88;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC010282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357872    GT:AD:DP:GQ:PL    0/1:3,2:5:69.38:69,0,88
5    115387930    rs2662469    T    C    3275.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4866;MQ=53.41;MQ0=0;QD=31.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2287O16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327878    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3275,259,0
5    115388019    rs2662470    T    C    1686.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.63;MQ0=0;QD=31.23;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2287O16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327878    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1719,144,0
5    115388022    rs79321576    A    C    1794.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=33.86;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2287O16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327878    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1828,144,0
5    115388091    rs2560698    C    T    801.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.83;MQ0=0;QD=38.15;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2287O16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327878    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:834,63,0
5    115423030    rs4920904    A    C    119.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274458    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
5    115426746    rs10065554    T    C    628.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274458    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:662,51,0
5    115428096    rs10478275    G    T    79.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274458    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:109,0,28
5    115428334    rs1129494    G    T    1765.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.77;DB;DP=55;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.8321;MQ=59.58;MQ0=0;MQRankSum=-0.962;QD=32.1;ReadPosRankSum=-1.476;SNPEFF_AMINO_ACID_CHANGE=T112;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115428242_115428397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274458    GT:AD:DP:GQ:PL    1/1:1,54:55:93.69:1799,94,0
5    115428439    rs6894046    T    A    708.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274458    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:741,54,0
5    115469773    rs2048220    C    T    749.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_AMINO_ACID_CHANGE=T122;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115469765_115469875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515539    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:783,57,0
5    115800963    rs28029    C    T    160.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.717;QD=14.57;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257414    GT:AD:DP:GQ:PL    0/1:5,6:11:99:190,0,146
5    115811220    rs423834    T    C    574.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.308;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.702;QD=12.76;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514316    GT:AD:DP:GQ:PL    0/1:25,20:45:99:604,0,863
5    115813726    rs34966    A    G    6498.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=191;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.88;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=Y50H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_115813710_115813850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282394    GT:AD:DP:GQ:PL    1/1:0,191:191:99:6499,478,0
5    115814106    rs34967    A    G    343.93    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=18;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.721;QD=19.11;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503402    GT:AD:DP:GQ:PL    0/1:7,11:18:99:374,0,233
5    115814496    rs40102    C    G    851.60    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=1.596;DB;DP=50;Dels=0.0;FS=3.372;HRun=0;HaplotypeScore=0.8941;MQ=59.54;MQ0=0;MQRankSum=-0.195;QD=17.03;ReadPosRankSum=0.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503402    GT:AD:DP:GQ:PL    0/1:23,27:50:99:882,0,770
5    115815684    rs27495    C    G    141.63    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.047;QD=7.87;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503402    GT:AD:DP:GQ:PL    0/1:12,6:18:99:172,0,442
5    115827356    rs154599    C    T    1433.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509665    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1467,111,0
5    115827407    rs154600    G    A    2544.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509665    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2577,199,0
5    115831092    rs32972    C    T    802.54    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=1.794;DB;DP=71;Dels=0.0;FS=5.374;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.018;QD=11.3;ReadPosRankSum=-2.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509665    GT:AD:DP:GQ:PL    0/1:44,27:71:99:833,0,1328
5    115831305    rs32973    G    A    628.92    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.4;MQ0=0;MQRankSum=0.46;QD=15.34;ReadPosRankSum=0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509665    GT:AD:DP:GQ:PL    0/1:20,21:41:99:659,0,634
5    115837772    rs154466    G    A    1354.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=37.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257414    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1387,105,0
5    115838117    rs54100    C    G    467.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=29.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257414    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:500,39,0
5    115840528    rs153644    C    T    1248.51    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=67;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.8941;MQ=59.72;MQ0=0;MQRankSum=1.873;QD=18.63;ReadPosRankSum=1.641;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257414    GT:AD:DP:GQ:PL    0/1:30,37:67:99:1279,0,866
5    118176509    rs111388652    C    CATT    696.38    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.529;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=78.5124;IndelType=I;MQ=56.35;MQ0=0;MQRankSum=-0.156;QD=26.78;ReadPosRankSum=0.571;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTWD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304058    GT:AD:DP:GQ:PL    0/1:15,11:26:99:735,0,745
5    118456977    rs10056088    T    A    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
5    118465215    rs4529225    G    A    127.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514151    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
5    118465249    rs7735538    A    G    93.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514151    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
5    118468694    .    G    C    99.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=9.99;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514151    GT:AD:DP:GQ:PL    0/1:6,4:10:99:130,0,189
5    118484804    rs7734532    G    A    2713.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.14;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=E1094;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_118484434_118486116;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311085    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2747,208,0
5    118507250    rs6866260    A    G    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504497    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    118513246    rs34139050    C    CTG    1583.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=69.8284;IndelType=I;MQ=60.28;MQ0=0;QD=54.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311085    GT:AD:DP:GQ:PL    1/1:0,29:29:87.30:1625,87,0
5    118532034    rs6595178    A    C    1607.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.41;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311085    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1641,123,0
5    118533199    rs7445077    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    118533828    rs10900728    C    G    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311085    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
5    118556350    rs2271059    C    T    662.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311085    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:696,51,0
5    118574562    rs11241496    A    G    256.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DMXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511622    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:289,24,0
5    118691693    rs3797339    C    A    76.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274456    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
5    118691929    rs6595185    A    T    117.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274456    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
5    118724982    rs76382133    G    GA    2343.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=3;HaplotypeScore=139.7418;IndelType=I;MQ=60.83;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274456    GT:AD:DP:GQ:PL    1/1:4,58:63:99:2386,172,0
5    118725105    rs5870856    CAG    C    2268.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=170.8719;IndelType=D;MQ=59.69;MQ0=0;QD=47.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274456    GT:AD:DP:GQ:PL    1/1:0,48:48:99:2311,144,0
5    118725322    rs1848554    T    C    82.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274456    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
5    118811314    rs13152959    G    A    137.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.453;QD=13.72;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519184    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,148
5    118861085    rs146163821    TA    T    92.99    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=18.5997;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=13.28;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256216    GT:AD:DP:GQ:PL    0/1:2,5:7:54.45:132,0,54
5    118965219    rs1451807    T    G    131.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM170A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296787    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
5    118965609    rs2431372    C    A    1646.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8835;MQ=57.03;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM170A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296787    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1679,123,0
5    118965623    rs2434599    A    G    1484.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.49;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM170A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296787    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1517,114,0
5    118965731    rs2431371    T    C    437.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.61;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM170A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296787    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:471,42,0
5    118968423    rs328698    T    G    1268.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM170A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296787    GT:AD:DP:GQ:PL    1/1:0,35:35:96.32:1301,96,0
5    118969960    rs328694    C    T    1882.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.53;SNPEFF_AMINO_ACID_CHANGE=P126S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_118969655_118970214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM170A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296787    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1916,147,0
5    118970770    rs2434600    C    T    831.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=F184;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_118970723_118970777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM170A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000509264    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:864,66,0
5    118970920    rs988464    G    A    113.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=28.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM170A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296787    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
5    120021819    rs1158194    G    A    4090.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2847;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_AMINO_ACID_CHANGE=P110;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_120021649_120023027;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407149    GT:AD:DP:GQ:PL    1/1:1,118:119:99:4091,304,0
5    121330223    rs6595336    C    T    858.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=60.0;MQ0=0;QD=39.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339397    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:892,66,0
5    121402453    .    A    G    491.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DP=36;Dels=0.0;FS=3.174;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.175;QD=13.65;ReadPosRankSum=-0.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508067    GT:AD:DP:GQ:PL    0/1:16,20:36:99:521,0,546
5    121726714    rs1946649    G    A    139.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=13.92;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNCAIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261367    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,175
5    122012270    rs17132683    C    T    701.39    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=39;Dels=0.0;FS=1.322;HRun=0;HaplotypeScore=1.5661;MQ=59.41;MQ0=0;MQRankSum=0.184;QD=17.98;ReadPosRankSum=-0.637;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ARGFXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489176    GT:AD:DP:GQ:PL    0/1:17,22:39:99:731,0,563
5    122012354    rs2407398    A    G    341.36    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.496;DB;DP=25;Dels=0.0;FS=1.58;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=13.65;ReadPosRankSum=-0.571;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ARGFXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489176    GT:AD:DP:GQ:PL    0/1:13,12:25:99:371,0,418
5    122012527    rs17149485    C    T    109.50    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=15.64;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ARGFXP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489176    GT:AD:DP:GQ:PL    0/1:3,4:7:99:139,0,105
5    122131082    rs2161391    A    G    840.44    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.24;DB;DP=62;Dels=0.0;FS=2.506;HRun=0;HaplotypeScore=0.9958;MQ=59.7;MQ0=0;MQRankSum=1.157;QD=13.56;ReadPosRankSum=0.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379516    GT:AD:DP:GQ:PL    0/1:33,29:62:99:870,0,1025
5    122135188    rs1903260    T    C    126.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379516    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
5    122137708    rs965821    A    G    1673.25    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.219;DB;DP=90;Dels=0.0;FS=0.82;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.886;QD=18.59;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379516    GT:AD:DP:GQ:PL    0/1:34,56:90:99:1703,0,1142
5    122161638    rs3213794    A    C    213.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.103;QD=13.35;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379516    GT:AD:DP:GQ:PL    0/1:8,8:16:99:244,0,284
5    122161961    rs72173661    A    AT    258.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=20;FS=4.472;HRun=6;HaplotypeScore=49.9165;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=-0.8;QD=12.93;ReadPosRankSum=-0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379516    GT:AD:DP:GQ:PL    0/1:10,10:20:99:298,0,111
5    122165209    rs6885464    T    G    195.05    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.163;QD=15.0;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507852    GT:AD:DP:GQ:PL    0/1:5,8:13:99:225,0,158
5    122272293    rs30043    G    C    131.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261369    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
5    122272641    rs30042    A    G    125.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261369    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
5    122281651    rs1038078    C    T    203.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=16.93;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261369    GT:AD:DP:GQ:PL    0/1:4,8:12:99:233,0,122
5    122281709    rs5871017    G    GT    526.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.794;DB;DP=29;FS=0.0;HRun=11;HaplotypeScore=93.6322;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=-0.293;QD=18.15;ReadPosRankSum=-0.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261369    GT:AD:DP:GQ:PL    1/1:6,21:29:5.27:566,5,0
5    122359502    rs112298891    A    AACAC    1075.62    PASS    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=57;FS=0.0;HRun=0;HaplotypeScore=462.2151;IndelType=I;MQ=55.09;MQ0=0;MQRankSum=1.692;QD=18.87;ReadPosRankSum=-0.989;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415659    GT:AD:DP:GQ:PL    0/1:23,12:57:64.59:1115,0,65
5    122359839    rs72203912    G    GAC    444.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=100.9431;IndelType=I;MQ=29.0;MQ0=0;QD=55.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415659    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:486,24,0
5    122359840    .    CGTTTTTT    C    627.65    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=106.6947;IndelType=D;MQ=29.0;MQ0=0;QD=78.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415659    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:670,24,0
5    122364683    rs10066632    C    A    172.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306442    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
5    122372402    rs28373879    G    C    109.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415659    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:142,12,0
5    122425832    rs13182369    G    T    115.24    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=51.25;MQ0=0;MQRankSum=0.529;QD=6.78;ReadPosRankSum=1.134;SNPEFF_AMINO_ACID_CHANGE=A41;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_122425695_122426301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407847    GT:AD:DP:GQ:PL    0/1:8,9:17:99:145,0,179
5    122495152    rs13161561    T    C    542.06    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=58.87;MQ0=0;MQRankSum=1.143;QD=13.22;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407847    GT:AD:DP:GQ:PL    0/1:23,18:41:99:572,0,744
5    122506891    rs34706194    G    A    646.98    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=51;Dels=0.0;FS=7.68;HRun=2;HaplotypeScore=1.7987;MQ=59.55;MQ0=0;MQRankSum=-0.446;QD=12.69;ReadPosRankSum=1.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464424    GT:AD:DP:GQ:PL    0/1:26,25:51:99:677,0,751
5    122682154    rs2303719    T    G    737.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508442    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:771,66,0
5    122682348    rs1047438    A    G    3675.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6575;MQ=59.8;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=D916;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_122680580_122682447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306481    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3675,283,0
5    122685727    rs1047437    C    G    805.49    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9612;MQ=59.73;MQ0=0;MQRankSum=1.079;QD=11.85;ReadPosRankSum=0.27;SNPEFF_AMINO_ACID_CHANGE=Q853H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_122685638_122685783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306481    GT:AD:DP:GQ:PL    0/1:36,32:68:99:835,0,1085
5    122685801    rs485847    G    A    1181.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1215,90,0
5    122713839    rs35412057    TA    T    330.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=24.1477;IndelType=D;MQ=61.07;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:372,30,0
5    122714134    rs141010737    TAAAAAA    T    510.57    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.942;DB;DP=49;FS=0.0;HRun=18;HaplotypeScore=394.7739;IndelType=D;MQ=48.09;MQ0=0;MQRankSum=-2.342;QD=10.42;ReadPosRankSum=2.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    0/1:28,14:49:99:550,0,1299
5    122718044    rs11950066    G    T    42.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=8.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:74,6,0
5    122718736    rs6595440    G    C    1083.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.4;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=L576V;SNPEFF_CODON_CHANGE=Cta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_122718680_122718776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306481    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1116,81,0
5    122720923    rs13159477    T    A    216.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:249,18,0
5    122727026    rs6876883    G    A    1902.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=34.59;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=H246;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_122726804_122727031;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306481    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1935,116,0
5    122727138    rs590279    T    A    751.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:785,60,0
5    122727171    rs6877089    G    T    354.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:387,30,0
5    122728913    rs35574017    C    T    801.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    1/1:0,22:23:63.19:834,63,0
5    122734724    rs113906753    T    TA    321.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=11;HaplotypeScore=46.7397;IndelType=I;MQ=58.45;MQ0=0;QD=21.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306467    GT:AD:DP:GQ:PL    1/1:3,12:15:36.07:363,36,0
5    122753918    .    T    TCTTA    524.66    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=0;HaplotypeScore=26.2063;IndelType=I;MQ=49.17;MQ0=0;QD=74.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515110    GT:AD:DP:GQ:PL    1/1:1,6:7:21.07:567,21,0
5    122950330    rs3797534    G    C    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511130    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    123973701    rs6896590    T    C    173.70    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=17.37;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF608;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306315    GT:AD:DP:GQ:PL    0/1:3,7:10:90.18:204,0,90
5    123974673    rs62370761    T    C    38.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.78;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF608;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503896    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:68,0,31
5    123983915    rs6862252    G    T    944.11    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.145;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=59.63;MQ0=0;MQRankSum=-1.805;QD=15.23;ReadPosRankSum=1.213;SNPEFF_AMINO_ACID_CHANGE=T294N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_123982372_123984826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF608;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504926    GT:AD:DP:GQ:PL    0/1:30,32:62:99:974,0,989
5    123984763    rs7708070    C    T    682.91    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=4.572;DB;DP=60;Dels=0.0;FS=2.46;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.052;QD=11.38;ReadPosRankSum=0.097;SNPEFF_AMINO_ACID_CHANGE=A11;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_123982372_123984826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF608;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504926    GT:AD:DP:GQ:PL    0/1:34,26:60:99:713,0,960
5    123985320    rs61752317    G    A    513.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.888;QD=21.41;ReadPosRankSum=0.643;SNPEFF_AMINO_ACID_CHANGE=H411;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_123985303_123985390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF608;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306315    GT:AD:DP:GQ:PL    0/1:8,16:24:99:544,0,185
5    123985484    rs11422549    C    CA    220.93    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=21.4794;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=0.896;QD=20.08;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF608;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306315    GT:AD:DP:GQ:PL    0/1:4,7:11:99:260,0,116
5    124036555    rs6873550    C    T    278.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.05;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF608;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306315    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:311,24,0
5    125813676    rs6595712    A    G    160.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509882    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
5    125828803    rs4358517    A    G    269.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502348    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:302,24,0
5    125880589    rs2775    T    C    92.45    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.4;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476328    GT:AD:DP:GQ:PL    0/1:7,4:11:99:122,0,255
5    125880951    rs4612066    G    T    35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476328    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
5    125886071    rs1038381    C    T    145.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=18.15;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503281    GT:AD:DP:GQ:PL    0/1:3,5:8:96.26:175,0,96
5    125887685    rs2306617    C    T    823.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503281    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:857,63,0
5    125896918    rs4836276    C    A    58.48    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.933;MQ=57.87;MQ0=0;MQRankSum=-0.825;QD=5.32;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413020    GT:AD:DP:GQ:PL    0/1:6,5:11:88.47:88,0,212
5    125898834    rs78968720    T    C    190.46    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=13.6;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413020    GT:AD:DP:GQ:PL    0/1:5,9:14:99:220,0,170
5    125904208    rs3734174    A    T    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.33;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409134    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,147
5    125906344    rs6897789    T    C    583.60    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3609;MQ=59.13;MQ0=0;MQRankSum=0.084;QD=12.16;ReadPosRankSum=2.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511266    GT:AD:DP:GQ:PL    0/1:29,19:48:99:614,0,1042
5    125944219    rs112502491    G    GTGTTTT    2142.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=109.8141;IndelType=I;MQ=40.5;MQ0=0;QD=73.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514725    GT:AD:DP:GQ:PL    1/1:5,22:29:75.25:2185,75,0
5    125967404    rs6862980    T    A    524.71    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.596;DB;DP=44;Dels=0.0;FS=1.646;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.534;QD=11.93;ReadPosRankSum=1.279;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297540    GT:AD:DP:GQ:PL    0/1:27,17:44:99:555,0,747
5    125971699    rs7705714    C    T    1337.35    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=94;Dels=0.0;FS=3.305;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=0.352;QD=14.23;ReadPosRankSum=1.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357147    GT:AD:DP:GQ:PL    0/1:52,42:94:99:1367,0,1504
5    126140350    rs968355    A    G    91.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=11.42;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261366    GT:AD:DP:GQ:PL    0/1:4,4:8:99:121,0,133
5    126140540    rs34224885    G    A    440.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.048;DB;DP=38;Dels=0.0;FS=4.887;HRun=3;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.349;QD=11.58;ReadPosRankSum=-0.015;SNPEFF_AMINO_ACID_CHANGE=S144;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_126140468_126140624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMNB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261366    GT:AD:DP:GQ:PL    0/1:19,19:38:99:470,0,602
5    126145704    rs3830481    C    CCTT    442.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=26.6857;IndelType=I;MQ=53.03;MQ0=0;QD=63.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261366    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:485,21,0
5    126145771    rs2271354    A    G    842.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261366    GT:AD:DP:GQ:PL    1/1:0,27:27:69.20:875,69,0
5    126147438    rs114024653    C    T    524.48    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.733;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.859;QD=12.49;ReadPosRankSum=0.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463908    GT:AD:DP:GQ:PL    0/1:23,19:42:99:554,0,760
5    126161962    rs6896584    T    G    86.05    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=21.51;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512460    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:116,0,30
5    126168563    rs33965644    TG    T    131.78    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=22.8549;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=14.64;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261366    GT:AD:DP:GQ:PL    0/1:4,5:9:99:171,0,111
5    126171999    rs1051643    T    C    2968.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.164;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.23;MQ0=0;MQRankSum=0.273;QD=30.92;ReadPosRankSum=-0.055;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460265    GT:AD:DP:GQ:PL    1/1:1,95:96:99:3001,205,0
5    126206303    rs34150806    C    T    361.82    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=38;Dels=0.0;FS=14.743;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=2.062;QD=9.52;ReadPosRankSum=1.877;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506088    GT:AD:DP:GQ:PL    0/1:25,13:38:99:392,0,736
5    126387694    rs2240800    A    G    387.70    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.563;QD=10.77;ReadPosRankSum=0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556512    GT:AD:DP:GQ:PL    0/1:23,13:36:99:418,0,716
5    126746001    rs80313631    C    G    146.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.47;QD=14.63;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,171
5    126746277    rs31483    C    T    245.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_AMINO_ACID_CHANGE=L372;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_126746081_126746293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
5    126769146    rs11950427    T    C    730.57    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.253;DB;DP=46;Dels=0.0;FS=9.478;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=15.88;ReadPosRankSum=1.115;SNPEFF_AMINO_ACID_CHANGE=P595;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_126769055_126769201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    0/1:17,29:46:99:761,0,519
5    126770359    rs79904777    G    A    265.76    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.012;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=0.025;QD=9.84;ReadPosRankSum=-1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    0/1:16,11:27:99:296,0,543
5    126773859    rs2408871    A    C    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
5    126774028    rs76148405    C    T    864.06    PASS    AB=0.229;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.57;QD=24.69;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    0/1:8,27:35:99:894,0,234
5    126776307    rs60681812    T    C    115.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=16.52;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    0/1:3,4:7:99:146,0,105
5    126781446    rs2270933    T    C    429.63    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.068;DB;DP=35;Dels=0.0;FS=1.5;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=12.28;ReadPosRankSum=0.551;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506709    GT:AD:DP:GQ:PL    0/1:18,17:35:99:460,0,455
5    126791256    rs56157640    G    A    694.12    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=51;Dels=0.0;FS=1.448;HRun=1;HaplotypeScore=0.5784;MQ=59.09;MQ0=0;MQRankSum=1.145;QD=13.61;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=E1063;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_126791093_126791299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    0/1:28,23:51:99:724,0,869
5    126792974    rs3812052    T    A    696.90    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=3.114;DB;DP=44;Dels=0.0;FS=5.601;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=1.243;QD=15.84;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=G1129;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_126792820_126796914;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274473    GT:AD:DP:GQ:PL    0/1:19,25:44:99:727,0,562
5    126860145    rs7733544    G    C    853.31    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.829;DB;DP=44;Dels=0.0;FS=3.647;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.066;QD=19.39;ReadPosRankSum=0.284;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507774    GT:AD:DP:GQ:PL    0/1:19,25:44:99:883,0,643
5    126865968    rs17164854    T    C    900.24    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.028;DB;DP=44;Dels=0.0;FS=1.541;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=0.391;QD=20.46;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296666    GT:AD:DP:GQ:PL    0/1:14,30:44:99:930,0,397
5    126993249    rs45074    G    C    403.41    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.233;DB;DP=39;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.176;QD=10.34;ReadPosRankSum=-1.204;SNPEFF_AMINO_ACID_CHANGE=V12;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_126993115_126994322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTXN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379445    GT:AD:DP:GQ:PL    0/1:22,17:39:99:433,0,713
5    126993263    rs248709    A    T    606.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=40;Dels=0.0;FS=1.208;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.095;QD=15.16;ReadPosRankSum=-1.258;SNPEFF_AMINO_ACID_CHANGE=E17V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_126993115_126994322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTXN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379445    GT:AD:DP:GQ:PL    0/1:20,20:40:99:636,0,650
5    127469859    rs2228112    A    G    1389.78    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.8;MQ0=0;MQRankSum=-1.799;QD=14.94;ReadPosRankSum=-0.682;SNPEFF_AMINO_ACID_CHANGE=E397;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_127469857_127469967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262461    GT:AD:DP:GQ:PL    0/1:43,50:93:99:1420,0,1312
5    127477418    rs3805607    T    C    150.43    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=16.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262461    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,138
5    127485599    rs2617618    C    T    130.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262461    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
5    127493679    rs17164310    A    G    71.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.27;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262461    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,109
5    127507316    rs113958494    A    AT    357.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=30;FS=0.0;HRun=10;HaplotypeScore=77.212;IndelType=I;MQ=59.23;MQ0=0;MQRankSum=-1.29;QD=11.93;ReadPosRankSum=0.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504416    GT:AD:DP:GQ:PL    0/1:14,15:30:99:397,0,218
5    127512873    rs1559263    A    C    1125.04    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=3.205;DB;DP=69;Dels=0.0;FS=1.042;HRun=3;HaplotypeScore=1.9557;MQ=59.67;MQ0=0;MQRankSum=0.242;QD=16.3;ReadPosRankSum=-0.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262461    GT:AD:DP:GQ:PL    0/1:25,44:69:99:1155,0,683
5    127514436    rs17764954    A    T    174.21    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.278;QD=15.84;ReadPosRankSum=1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262461    GT:AD:DP:GQ:PL    0/1:4,7:11:99:204,0,134
5    127522153    rs112216172    G    GT    2007.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.351;DB;DP=97;FS=0.0;HRun=12;HaplotypeScore=373.8197;IndelType=I;MQ=59.65;MQ0=0;MQRankSum=1.123;QD=20.69;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502849    GT:AD:DP:GQ:PL    1/1:14,77:97:93.17:2049,93,0
5    127597262    rs10077809    T    A    58.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.36;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:3,4:7:88.52:89,0,108
5    127597518    rs10070365    G    A    1060.05    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.11;DB;DP=78;Dels=0.0;FS=3.026;HRun=0;HaplotypeScore=1.9198;MQ=59.52;MQ0=0;MQRankSum=0.603;QD=13.59;ReadPosRankSum=0.774;SNPEFF_AMINO_ACID_CHANGE=S2758;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_127597428_127597599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:43,35:78:99:1090,0,1307
5    127613791    rs426987    C    G    272.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=22.69;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:4,8:12:99:302,0,125
5    127614472    rs190450    A    G    330.64    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=48;Dels=0.0;FS=8.506;HRun=0;HaplotypeScore=0.9993;MQ=59.52;MQ0=0;MQRankSum=-0.171;QD=6.89;ReadPosRankSum=0.22;SNPEFF_AMINO_ACID_CHANGE=S2400;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_127614327_127614533;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:33,15:48:99:361,0,1063
5    127622983    rs2042327    C    T    1074.17    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.307;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8674;MQ=60.0;MQ0=0;MQRankSum=-2.371;QD=10.85;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:59,40:99:99:1104,0,1858
5    127625559    rs56131649    T    C    133.57    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.049;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.025;QD=7.42;ReadPosRankSum=-1.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:10,8:18:99:164,0,333
5    127640783    rs60746914    G    A    244.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.963;DB;DP=21;Dels=0.0;FS=2.098;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.216;QD=11.63;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:9,12:21:99:274,0,258
5    127640861    rs27855    A    G    78.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=13.01;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,108
5    127648188    rs461146    G    A    601.91    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.504;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=1.504;QD=13.68;ReadPosRankSum=-1.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:23,21:44:99:632,0,713
5    127685135    rs154001    C    T    326.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.159;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.416;QD=11.65;ReadPosRankSum=0.952;SNPEFF_AMINO_ACID_CHANGE=V932I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_127685039_127685164;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508989    GT:AD:DP:GQ:PL    0/1:16,12:28:99:356,0,477
5    127692821    rs27457    T    C    68.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=6.81;ReadPosRankSum=-2.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:6,4:10:98.13:98,0,221
5    127712687    rs1508866    C    T    90.31    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262464    GT:AD:DP:GQ:PL    0/1:6,4:10:99:120,0,186
5    128301824    rs2526246    T    A    56.29    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=3.75;ReadPosRankSum=-0.212;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_128301671_128302311;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395266    GT:AD:DP:GQ:PL    0/1:11,4:15:86.29:86,0,353
5    128301885    rs2526247    T    G    273.26    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.285;DB;DP=34;Dels=0.0;FS=2.006;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-1.067;QD=8.04;ReadPosRankSum=0.805;SNPEFF_AMINO_ACID_CHANGE=L19V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_128300821_128302311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262462    GT:AD:DP:GQ:PL    0/1:22,12:34:99:303,0,722
5    128301971    rs2577541    T    C    608.20    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=52;Dels=0.0;FS=5.874;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.753;QD=11.7;ReadPosRankSum=-1.138;SNPEFF_AMINO_ACID_CHANGE=Y47;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_128300821_128302311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262462    GT:AD:DP:GQ:PL    0/1:31,21:52:99:638,0,874
5    128326177    rs78694062    G    GA    123.39    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=20;FS=6.107;HRun=7;HaplotypeScore=40.5158;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=-0.702;QD=6.17;ReadPosRankSum=-1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262462    GT:AD:DP:GQ:PL    0/1:14,6:20:99:162,0,294
5    128359247    rs31271    T    C    311.22    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.44;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=19.45;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262462    GT:AD:DP:GQ:PL    0/1:6,10:16:99:341,0,183
5    128359297    .    A    AT    363.57    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.648;DP=33;FS=3.785;HRun=11;HaplotypeScore=150.5781;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.348;QD=11.02;ReadPosRankSum=0.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262462    GT:AD:DP:GQ:PL    0/1:15,17:33:99:403,0,194
5    128430384    rs2059123    T    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.19;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173527    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:84,6,0
5    128430402    .    G    C    74.11    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173527    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
5    128430757    rs1127827    T    C    150.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_128430444_128430768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISOC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000173527    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:184,15,0
5    128440508    rs766328    A    G    209.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.62;MQ0=0;QD=29.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173527    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
5    128797105    rs72663400    G    A    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_AMINO_ACID_CHANGE=G128;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_128796795_128797450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    128797156    rs182638734    C    G    38.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.05;SNPEFF_AMINO_ACID_CHANGE=P145;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_128796795_128797450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
5    128797315    .    T    TCCCGGC    513.96    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DP=13;FS=0.0;HRun=0;HaplotypeScore=59.649;IndelType=I;MQ=50.27;MQ0=0;MQRankSum=-0.895;QD=39.54;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=-199PG;SNPEFF_CODON_CHANGE=-/CCCGGC;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_5_128796795_128797450;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274487    GT:AD:DP:GQ:PL    0/1:7,5:13:99:553,0,165
5    128863471    rs6595908    A    G    2440.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=35.37;SNPEFF_AMINO_ACID_CHANGE=S367G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_128863441_128863524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274487    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2474,187,0
5    128932138    rs3944133    T    C    466.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274487    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:500,36,0
5    128990307    rs6899246    G    A    119.13    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.83;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274487    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:149,0,27
5    129015452    rs30645    T    C    729.15    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=3.163;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.155;QD=16.57;ReadPosRankSum=-0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274487    GT:AD:DP:GQ:PL    0/1:18,26:44:99:759,0,545
5    129015668    rs246443    T    C    1253.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274487    GT:AD:DP:GQ:PL    1/1:0,38:38:96.26:1287,96,0
5    129072635    rs67725256    C    T    208.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.654;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.154;QD=14.91;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509467    GT:AD:DP:GQ:PL    0/1:7,7:14:99:239,0,256
5    129072943    rs1465686    G    T    427.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509467    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:461,36,0
5    129095900    rs6896490    A    G    42.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=CTC-575N7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515569    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
5    129100424    rs2080945    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=KIAA1024L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510883    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    129100819    rs66697102    AC    A    210.48    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.37;DB;DP=25;FS=3.203;HRun=8;HaplotypeScore=60.4296;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.262;QD=8.42;ReadPosRankSum=1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=KIAA1024L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334562    GT:AD:DP:GQ:PL    0/1:14,11:25:99:250,0,365
5    129244133    rs2431206    A    G    176.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHSY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305031    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
5    129519874    rs10066410    G    A    1009.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHSY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305031    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1042,78,0
5    129521126    rs2015018    A    G    884.08    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.024;DB;DP=71;Dels=0.0;FS=0.935;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.991;QD=12.45;ReadPosRankSum=-0.298;SNPEFF_AMINO_ACID_CHANGE=D764G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_129519922_129522327;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHSY3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305031    GT:AD:DP:GQ:PL    0/1:41,30:71:99:914,0,1268
5    130500751    rs2278060    A    C    212.01    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.871;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=58.99;MQ0=0;MQRankSum=0.42;QD=9.22;ReadPosRankSum=0.549;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINT1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000504202    GT:AD:DP:GQ:PL    0/1:15,8:23:99:242,0,478
5    130515811    rs113642581    G    A    842.80    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.398;DB;DP=70;Dels=0.0;FS=4.742;HRun=0;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=12.04;ReadPosRankSum=-0.39;SNPEFF_AMINO_ACID_CHANGE=L14;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_130515788_130515860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYRM7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379380    GT:AD:DP:GQ:PL    0/1:39,31:70:99:873,0,1223
5    130726599    rs147277736    TAAAATTCTGGG    T    1531.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=192.208;IndelType=D;MQ=29.0;MQ0=0;QD=90.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDC42SE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360515    GT:AD:DP:GQ:PL    1/1:2,15:17:45.15:1574,45,0
5    130766662    rs1291602    T    C    3082.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7998;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_AMINO_ACID_CHANGE=Q1452R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_130766552_130767042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000509018    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3115,247,0
5    130788642    rs12656936    A    C    774.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=38.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514667    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:807,60,0
5    130788698    rs10054168    C    T    1294.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514667    GT:AD:DP:GQ:PL    1/1:0,40:40:96.32:1327,96,0
5    130843961    .    C    T    438.84    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=4.494;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=13.3;ReadPosRankSum=-0.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514667    GT:AD:DP:GQ:PL    0/1:17,16:33:99:469,0,515
5    130883996    rs17671387    T    G    68.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.61;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514667    GT:AD:DP:GQ:PL    0/1:5,4:9:98.49:98,0,182
5    131007163    .    A    T    779.29    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.946;DP=42;Dels=0.0;FS=3.445;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.025;QD=18.55;ReadPosRankSum=1.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307954    GT:AD:DP:GQ:PL    0/1:19,23:42:99:809,0,603
5    131008194    rs26008    T    C    3360.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=59.32;MQ0=0;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=Q400R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131007198_131008354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544351    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3361,262,0
5    131066725    rs7730228    C    A    1525.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=58.41;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=G76C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131066597_131066731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307968    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1558,114,0
5    131283376    rs683749    C    T    1087.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=37.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357096    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1120,84,0
5    131312327    rs370652    G    T    1687.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.1527;MQ=57.29;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296869    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1721,126,0
5    131326522    rs113764534    AC    A    1324.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=9;HaplotypeScore=178.3278;IndelType=D;MQ=57.81;MQ0=0;QD=24.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469164    GT:AD:DP:GQ:PL    1/1:6,48:54:99:1366,150,0
5    131396332    rs31480    C    T    614.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=27.92;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_131396222_131396561;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296870    GT:AD:DP:GQ:PL    1/1:0,22:22:54.14:647,54,0
5    131396478    rs40401    C    T    1295.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=P27S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131396222_131396561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296870    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1328,105,0
5    131411460    rs25882    T    C    3356.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.77;MQ0=0;QD=33.23;SNPEFF_AMINO_ACID_CHANGE=I117T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131411438_131411859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296871    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3357,244,0
5    131530411    rs17165741    C    T    107.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=17.88;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P4HA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000166534    GT:AD:DP:GQ:PL    0/1:2,4:6:38.08:137,0,38
5    131545168    rs156023    C    T    103.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.56;MQ0=0;MQRankSum=-2.017;QD=12.98;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P4HA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395164    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,100
5    131546280    rs154483    A    G    1468.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.316;DB;DP=94;Dels=0.0;FS=6.922;HRun=0;HaplotypeScore=0.8321;MQ=59.51;MQ0=0;MQRankSum=-0.227;QD=15.62;ReadPosRankSum=-1.149;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P4HA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418055    GT:AD:DP:GQ:PL    0/1:47,47:94:99:1499,0,1421
5    131553427    rs188406019    G    A    522.85    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.699;DB;DP=32;Dels=0.0;FS=6.789;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=15.84;ReadPosRankSum=0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P4HA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428841    GT:AD:DP:GQ:PL    0/1:15,17:32:99:553,0,448
5    131602166    rs1007602    T    C    335.03    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.122;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.656;QD=15.23;ReadPosRankSum=0.347;SNPEFF_AMINO_ACID_CHANGE=G26;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131602157_131602238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418373    GT:AD:DP:GQ:PL    0/1:9,13:22:99:365,0,225
5    131606936    rs2292260    G    A    233.47    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.035;QD=11.12;ReadPosRankSum=-1.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463615    GT:AD:DP:GQ:PL    0/1:11,10:21:99:263,0,386
5    131607080    rs270619    A    G    719.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=P197;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131606996_131607159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253754    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:752,60,0
5    131607297    rs162886    A    G    84.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418373    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
5    131607494    rs162884    C    T    175.97    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=9.26;ReadPosRankSum=-0.933;SNPEFF_AMINO_ACID_CHANGE=P227;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131607484_131607601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253754    GT:AD:DP:GQ:PL    0/1:8,11:19:99:206,0,241
5    131607588    rs4877    G    T    239.70    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=14.1;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=G259C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131607484_131607601;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253754    GT:AD:DP:GQ:PL    0/1:8,9:17:99:270,0,227
5    131607942    rs9895    G    C    350.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=29.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P4HA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481636    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:384,30,0
5    131649186    rs270607    A    G    373.61    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=12.88;ReadPosRankSum=0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200652    GT:AD:DP:GQ:PL    0/1:16,13:29:99:404,0,525
5    131649222    rs2073838    G    A    446.06    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.243;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=12.74;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200652    GT:AD:DP:GQ:PL    0/1:19,16:35:99:476,0,608
5    131657784    rs3761659    G    C    294.40    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.343;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.026;QD=11.32;ReadPosRankSum=-1.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491257    GT:AD:DP:GQ:PL    0/1:16,10:26:99:324,0,555
5    131658085    rs270600    T    C    519.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=32.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491257    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:553,45,0
5    131667353    rs273909    A    G    295.62    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.472;QD=11.82;ReadPosRankSum=-1.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200652    GT:AD:DP:GQ:PL    0/1:12,13:25:99:326,0,415
5    131667548    rs2304081    G    A    895.56    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.024;QD=15.71;ReadPosRankSum=-0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200652    GT:AD:DP:GQ:PL    0/1:28,29:57:99:926,0,910
5    131670178    rs272880    C    T    98.26    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.83;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200652    GT:AD:DP:GQ:PL    0/1:6,4:10:99:128,0,217
5    131705558    rs13180186    G    T    40.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415928    GT:AD:DP:GQ:PL    0/1:2,2:4:53.72:71,0,54
5    131705949    rs2631365    T    C    84.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.31;MQ0=0;QD=21.02;SNPEFF_AMINO_ACID_CHANGE=L95;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131705444_131706057;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245407    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
5    131713774    rs2073642    C    T    161.54    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=12.43;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245407    GT:AD:DP:GQ:PL    0/1:7,6:13:99:192,0,235
5    131719689    rs71583486    G    T    138.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.72;MQ0=0;MQRankSum=-0.361;QD=15.34;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245407    GT:AD:DP:GQ:PL    0/1:4,5:9:99:168,0,99
5    131719999    rs4551059    A    G    968.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245407    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:1001,75,0
5    131720070    rs274559    A    G    480.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245407    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:514,39,0
5    131721174    rs274558    A    G    835.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=L192;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131721020_131721191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415928    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:869,63,0
5    131721204    rs274557    T    C    581.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245407    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:614,48,0
5    131722951    rs274555    C    T    839.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415928    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:873,66,0
5    131724814    rs2073645    A    G    31.82    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=3.98;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415928    GT:AD:DP:GQ:PL    0/1:5,3:8:61.81:62,0,185
5    131729118    rs274549    A    C    132.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437841    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
5    131730011    rs1045020    C    T    1012.75    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.254;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.03;MQ0=0;MQRankSum=1.1;QD=16.33;ReadPosRankSum=1.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435065    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1043,0,892
5    131730052    rs142209594    CA    C    1650.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=4;HaplotypeScore=209.0291;IndelType=D;MQ=60.25;MQ0=0;QD=33.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435065    GT:AD:DP:GQ:PL    1/1:3,47:50:99:1692,141,0
5    131755477    rs4451042    G    T    227.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337752    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:261,21,0
5    131792639    rs112551210    A    AT    142.29    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=18;FS=0.0;HRun=9;HaplotypeScore=40.9888;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=7.91;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337752    GT:AD:DP:GQ:PL    0/1:11,7:18:99:181,0,209
5    131796498    rs2522048    T    C    1191.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.8;MQ0=0;QD=37.24;SNPEFF_AMINO_ACID_CHANGE=H111;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131796254_131798059;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337752    GT:AD:DP:GQ:PL    1/1:0,32:32:93.30:1225,93,0
5    131796573    rs2522049    T    C    1812.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3937;MQ=58.47;MQ0=0;QD=29.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378947    GT:AD:DP:GQ:PL    1/1:0,60:61:99:1845,147,0
5    131796809    rs2706396    A    C    160.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378947    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
5    131811759    rs10719050    GA    G    565.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=4;HaplotypeScore=102.5418;IndelType=D;MQ=59.32;MQ0=0;QD=31.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378953    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:607,51,0
5    131811777    rs2706382    A    C    349.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378953    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:383,30,0
5    131819798    rs2070731    T    C    587.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437654    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:621,48,0
5    131819800    rs2070730    G    A    533.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437654    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:566,48,0
5    131819921    rs2070729    C    A    329.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437654    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:362,27,0
5    131819970    rs7701588    T    C    739.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437654    GT:AD:DP:GQ:PL    1/1:0,22:22:63.18:772,63,0
5    131819977    rs2070728    C    T    767.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437654    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:800,63,0
5    131820275    rs2070727    C    A    809.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437654    GT:AD:DP:GQ:PL    1/1:0,24:24:66.17:842,66,0
5    131821188    rs17848418    C    T    289.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437654    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
5    131821246    rs10068129    G    A    978.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437654    GT:AD:DP:GQ:PL    1/1:0,28:28:78.24:1011,78,0
5    131821738    rs2070726    C    A    226.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439555    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:260,21,0
5    131821788    rs2070725    C    T    593.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439555    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:626,48,0
5    131821866    rs10214312    T    G    1185.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.289;DB;DP=36;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=1.5781;MQ=58.18;MQ0=0;MQRankSum=1.444;QD=32.92;ReadPosRankSum=1.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439555    GT:AD:DP:GQ:PL    1/1:1,35:36:56.31:1218,56,0
5    131822055    rs9282762    T    C    929.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=25.12;SNPEFF_AMINO_ACID_CHANGE=P185;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_131821943_131822065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245414    GT:AD:DP:GQ:PL    1/1:0,37:37:81.16:963,81,0
5    131822072    rs2070724    A    G    988.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-1.103;QD=28.26;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439555    GT:AD:DP:GQ:PL    1/1:1,34:35:84.24:1022,84,0
5    131822133    rs9282763    T    C    454.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439555    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:488,39,0
5    131822224    rs9282761    T    C    630.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9162;MQ=56.45;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439555    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:664,51,0
5    131823519    rs13170412    A    G    285.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493208    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:319,27,0
5    131892357    rs2706335    C    T    358.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450655    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:391,30,0
5    131892979    rs4526098    G    A    1296.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8606;MQ=59.56;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416135    GT:AD:DP:GQ:PL    1/1:0,40:42:99:1329,102,0
5    131893329    rs2548986    T    C    207.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265335    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
5    131915213    rs17166050    G    A    461.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.883;QD=13.58;ReadPosRankSum=0.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265335    GT:AD:DP:GQ:PL    0/1:17,17:34:99:492,0,540
5    131915279    rs75639632    A    G    95.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=9.57;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265335    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,218
5    131939904    rs12187537    T    G    164.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496204    GT:AD:DP:GQ:PL    1/1:0,5:6:15.05:197,15,0
5    131952072    rs4705961    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265335    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    131973177    rs2040704    A    G    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265335    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,70
5    132036252    rs1468216    T    C    32.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.7;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378735    GT:AD:DP:GQ:PL    0/1:5,2:7:62.92:63,0,186
5    132036489    rs1468215    A    T    279.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=18.61;ReadPosRankSum=0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378735    GT:AD:DP:GQ:PL    0/1:6,9:15:99:309,0,202
5    132038199    rs3213639    C    T    426.94    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=34;Dels=0.0;FS=6.743;HRun=4;HaplotypeScore=1.612;MQ=60.0;MQ0=0;MQRankSum=-1.351;QD=12.56;ReadPosRankSum=0.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378735    GT:AD:DP:GQ:PL    0/1:16,17:34:99:457,0,507
5    132039132    rs2285700    C    A    1067.44    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.207;DB;DP=70;Dels=0.0;FS=2.423;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.511;QD=15.25;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378735    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1097,0,1146
5    132046789    rs11740584    G    C    1245.54    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.701;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.199;QD=20.42;ReadPosRankSum=1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378735    GT:AD:DP:GQ:PL    0/1:24,37:61:99:1276,0,817
5    132070242    rs7732520    C    T    1039.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378735    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1072,81,0
5    132098242    rs30510    A    G    1549.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.52;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=N150;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_132098176_132098337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378699    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1582,123,0
5    132149684    rs40274    G    C    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_AMINO_ACID_CHANGE=R124P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_132149033_132152488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378693    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
5    132150948    rs40470    T    G    794.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=29.42;SNPEFF_AMINO_ACID_CHANGE=F545L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_132149033_132152488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378693    GT:AD:DP:GQ:PL    1/1:0,27:27:63.19:827,63,0
5    132198199    rs254286    G    A    1453.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_AMINO_ACID_CHANGE=T149;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_132196878_132198248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296875    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1486,108,0
5    132198287    rs254285    C    G    706.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296875    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:740,54,0
5    132210436    rs803221    T    C    190.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=27.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265343    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:223,18,0
5    132219384    rs2243551    G    A    127.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265343    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
5    132220748    rs45441396    C    T    181.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=14;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.421;QD=12.96;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265343    GT:AD:DP:GQ:PL    0/1:7,7:14:99:211,0,232
5    132227677    rs6596093    A    G    264.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=29.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478588    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:298,27,0
5    132228133    rs11739417    A    G    593.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.157;DB;DP=55;Dels=0.0;FS=2.797;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.308;QD=10.79;ReadPosRankSum=1.664;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378593    GT:AD:DP:GQ:PL    0/1:33,22:55:99:623,0,1040
5    132228983    rs3815152    G    A    130.97    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=16.37;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378593    GT:AD:DP:GQ:PL    0/1:3,5:8:98.92:161,0,99
5    132234152    rs72537087    C    CG    452.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=1;HaplotypeScore=57.9318;IndelType=I;MQ=55.21;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265343    GT:AD:DP:GQ:PL    1/1:3,11:15:33.11:495,33,0
5    132270663    rs10039125    T    A    280.38    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.209;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.905;QD=13.35;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265343    GT:AD:DP:GQ:PL    0/1:8,13:21:99:310,0,249
5    132334252    rs3087646    A    G    208.47    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.847;DB;DP=21;Dels=0.0;FS=2.702;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=9.93;ReadPosRankSum=2.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506403    GT:AD:DP:GQ:PL    0/1:13,8:21:99:238,0,436
5    132335951    rs2059783    A    G    214.87    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=17.91;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324170    GT:AD:DP:GQ:PL    0/1:5,7:12:99:245,0,163
5    132424963    rs78225557    T    C    56.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.361;QD=5.7;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504328    GT:AD:DP:GQ:PL    0/1:4,6:10:86.99:87,0,138
5    132433049    rs55643445    G    T    702.05    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.091;DB;DP=46;Dels=0.0;FS=2.157;HRun=1;HaplotypeScore=0.9993;MQ=59.5;MQ0=0;MQRankSum=0.564;QD=15.26;ReadPosRankSum=1.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304858    GT:AD:DP:GQ:PL    0/1:22,23:46:99:732,0,722
5    132546059    rs3828692    G    A    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.57;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265342    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,98
5    132559950    rs2303671    T    G    89.67    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.563;DB;DP=18;Dels=0.0;FS=2.112;HRun=1;HaplotypeScore=0.8667;MQ=58.71;MQ0=0;MQRankSum=0.296;QD=4.98;ReadPosRankSum=0.986;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265342    GT:AD:DP:GQ:PL    0/1:13,5:18:99:120,0,431
5    132561277    rs2241583    G    A    690.47    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=4.275;DB;DP=41;Dels=0.0;FS=3.695;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.85;QD=16.84;ReadPosRankSum=-0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265342    GT:AD:DP:GQ:PL    0/1:19,22:41:99:720,0,476
5    132561468    rs61741674    C    A    1183.09    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=0.305;DB;DP=81;Dels=0.0;FS=8.575;HRun=0;HaplotypeScore=2.1623;MQ=59.02;MQ0=0;MQRankSum=-0.235;QD=14.61;ReadPosRankSum=0.385;SNPEFF_AMINO_ACID_CHANGE=E184D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_132561350_132561511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360575    GT:AD:DP:GQ:PL    0/1:40,41:81:99:1213,0,1117
5    132569260    rs35758896    GCCT    G    422.74    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.391;DB;DP=17;FS=3.14;HRun=0;HaplotypeScore=66.8012;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=-0.146;QD=24.87;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265342    GT:AD:DP:GQ:PL    0/1:7,10:17:99:462,0,408
5    132736614    rs17166688    C    T    330.33    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.245;DB;DP=25;Dels=0.0;FS=1.66;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-1.713;QD=13.21;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=R75;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_132736430_132736678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265342    GT:AD:DP:GQ:PL    0/1:13,12:25:99:360,0,316
5    132939412    rs72789144    C    T    123.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.461;QD=10.26;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265342    GT:AD:DP:GQ:PL    0/1:7,5:12:99:153,0,256
5    133311842    rs34017723    G    C    102.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.79;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425992    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,135
5    133482348    rs40273    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321584    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    133537438    rs2302598    T    A    257.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CDKL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518409    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
5    133537479    rs2302599    T    G    328.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CDKL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518409    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:361,30,0
5    133541548    rs2239543    A    G    232.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CDKL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518409    GT:AD:DP:GQ:PL    1/1:0,13:13:24.06:265,24,0
5    133561589    rs3863186    G    C    1039.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=29.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CDKL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518409    GT:AD:DP:GQ:PL    1/1:0,35:35:87.23:1073,87,0
5    133655468    rs4958228    T    C    34.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=17.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CDKL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
5    133657610    rs34094285    G    GA    621.22    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.467;DB;DP=55;FS=1.341;HRun=9;HaplotypeScore=120.714;IndelType=I;MQ=59.78;MQ0=0;MQRankSum=-0.813;QD=11.29;ReadPosRankSum=-0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CDKL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265334    GT:AD:DP:GQ:PL    0/1:33,22:55:99:660,0,381
5    133723963    .    T    G    274    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.415;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.591;QD=12.45;ReadPosRankSum=-2.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265339    GT:AD:DP:GQ:PL    0/1:11,11:22:99:304,0,400
5    133873572    rs329126    A    C    383.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515554    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:417,30,0
5    133873577    rs2304082    C    T    420.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515554    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:453,33,0
5    133896744    rs2589404    A    G    163.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453515    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
5    133898136    rs10056247    C    T    325.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431355    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:359,27,0
5    133900111    rs329311    A    C    69.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431355    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:101,9,0
5    133902288    rs2044318    C    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431355    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
5    133909060    rs2241700    C    T    77.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.27;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282605    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:107,0,30
5    133909475    rs329322    G    A    541.48    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.253;DB;DP=47;Dels=0.0;FS=1.286;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.297;QD=11.52;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282605    GT:AD:DP:GQ:PL    0/1:25,22:47:99:571,0,688
5    133942492    rs7728741    T    C    129.05    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.685;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.685;QD=7.59;ReadPosRankSum=0.685;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502286    GT:AD:DP:GQ:PL    0/1:12,5:17:99:159,0,447
5    133956668    rs11558540    G    A    711.59    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.199;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.382;QD=12.27;ReadPosRankSum=0.033;SNPEFF_AMINO_ACID_CHANGE=L45;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_133956623_133956742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAR1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402673    GT:AD:DP:GQ:PL    0/1:33,25:58:99:742,0,925
5    133959863    rs60354052    C    G    77.64    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.41;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394992    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:108,0,30
5    133984645    rs61421945    CT    C    141.74    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=21.0935;IndelType=D;MQ=63.51;MQ0=0;MQRankSum=0.736;QD=23.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_5_133983806_133984961;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394992    GT:AD:DP:GQ:PL    0/1:1,5:6:24.95:181,0,25
5    133984878    rs142959485    G    T    170.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.524;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=12.2;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322887    GT:AD:DP:GQ:PL    0/1:7,7:14:99:201,0,253
5    134015523    rs10042142    C    G    508.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322887    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:542,39,0
5    134015572    rs2303669    C    T    34.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.73;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322887    GT:AD:DP:GQ:PL    0/1:4,2:6:64.35:64,0,118
5    134033777    rs246341    G    A    1289.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.34;MQ0=0;QD=36.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322887    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1322,99,0
5    134040897    rs111899246    G    C    183.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=18.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398844    GT:AD:DP:GQ:PL    0/1:4,6:10:99:214,0,124
5    134041193    rs148628074    G    C    505.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.698;QD=25.3;ReadPosRankSum=0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398844    GT:AD:DP:GQ:PL    0/1:5,15:20:99:536,0,150
5    134109602    rs2059803    A    G    469.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.067;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.069;QD=13.81;ReadPosRankSum=-0.861;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354283    GT:AD:DP:GQ:PL    0/1:17,17:34:99:499,0,569
5    134113558    rs254713    G    A    70.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354283    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:103,9,0
5    134116779    rs149297446    T    C    272.17    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.392;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.237;QD=20.94;ReadPosRankSum=-0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509255    GT:AD:DP:GQ:PL    0/1:4,9:13:99:302,0,113
5    134117594    rs79144829    T    C    295.18    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.408;DB;DP=25;Dels=0.0;FS=1.721;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=11.81;ReadPosRankSum=0.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509255    GT:AD:DP:GQ:PL    0/1:13,12:25:99:325,0,332
5    134118862    rs73299309    G    A    496.07    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=28;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.138;QD=17.72;ReadPosRankSum=0.829;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513987    GT:AD:DP:GQ:PL    0/1:13,15:28:99:526,0,424
5    134147620    rs115402466    G    T    93.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.365;QD=9.33;ReadPosRankSum=2.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354283    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,224
5    134164284    rs66592658    GT    G    677.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=12;HaplotypeScore=145.2069;IndelType=D;MQ=57.87;MQ0=0;QD=19.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DDX46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354283    GT:AD:DP:GQ:PL    1/1:6,28:34:94.62:720,95,0
5    134331822    rs299363    G    A    253.09    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=18.08;ReadPosRankSum=-1.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511235    GT:AD:DP:GQ:PL    0/1:5,9:14:99:283,0,167
5    134331921    rs299364    T    G    534.88    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.294;DB;DP=37;Dels=0.0;FS=3.11;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=14.46;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511235    GT:AD:DP:GQ:PL    0/1:18,19:37:99:565,0,537
5    134343799    rs177252    A    G    596.68    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.137;DB;DP=38;Dels=0.0;FS=5.506;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=15.7;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=A215;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_134343647_134343829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282611    GT:AD:DP:GQ:PL    0/1:18,20:38:99:627,0,600
5    134344497    rs299376    T    C    378.76    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.256;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6511;MQ=60.0;MQ0=0;MQRankSum=0.308;QD=13.53;ReadPosRankSum=0.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504352    GT:AD:DP:GQ:PL    0/1:14,13:28:99:409,0,350
5    134344902    rs299377    T    C    369.06    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.78;MQ0=0;MQRankSum=-1.171;QD=19.42;ReadPosRankSum=0.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504352    GT:AD:DP:GQ:PL    0/1:6,13:19:99:399,0,195
5    134344929    rs299378    C    G    514.25    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.983;MQ=59.07;MQ0=0;MQRankSum=-1.317;QD=20.57;ReadPosRankSum=0.765;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504352    GT:AD:DP:GQ:PL    0/1:8,17:25:99:544,0,246
5    134344977    rs112736392    C    T    620.56    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=39;Dels=0.0;FS=4.077;HRun=0;HaplotypeScore=0.7887;MQ=59.52;MQ0=0;MQRankSum=1.535;QD=15.91;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504352    GT:AD:DP:GQ:PL    0/1:19,20:39:99:651,0,512
5    134346304    rs877812    G    A    313.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504352    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:346,27,0
5    134364996    rs1131611    G    T    243.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.859;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7779;MQ=59.43;MQ0=0;MQRankSum=1.127;QD=7.38;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=R140;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_134362615_134365011;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265340    GT:AD:DP:GQ:PL    0/1:22,11:33:99:274,0,665
5    134365070    rs10056994    C    T    169.44    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=13.03;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502676    GT:AD:DP:GQ:PL    0/1:7,6:13:99:199,0,221
5    134365091    rs474853    T    C    273.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502676    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:306,24,0
5    134366873    rs10041469    T    G    72.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.42;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502676    GT:AD:DP:GQ:PL    0/1:2,3:5:61.32:102,0,61
5    134678863    rs868733    G    A    317.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.643;QD=15.89;ReadPosRankSum=0.038;SNPEFF_AMINO_ACID_CHANGE=A49T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_134678845_134680375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-203F4.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432382    GT:AD:DP:GQ:PL    0/1:10,10:20:99:348,0,351
5    135178124    rs2304075    T    C    1383.65    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.817;DB;DP=117;Dels=0.0;FS=3.675;HRun=0;HaplotypeScore=5.3686;MQ=59.45;MQ0=0;MQRankSum=-0.128;QD=11.83;ReadPosRankSum=-0.85;SNPEFF_AMINO_ACID_CHANGE=V22;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_135178105_135178148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A48;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274513    GT:AD:DP:GQ:PL    0/1:58,59:117:99:1414,0,1781
5    135186075    rs2304077    A    G    284.59    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=0.723;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.782;QD=6.94;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274513    GT:AD:DP:GQ:PL    0/1:29,12:41:99:315,0,735
5    135188214    rs2304078    G    C    522.25    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=4.187;DB;DP=57;Dels=0.0;FS=1.743;HRun=3;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;MQRankSum=0.074;QD=9.16;ReadPosRankSum=-1.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274513    GT:AD:DP:GQ:PL    0/1:28,29:57:99:552,0,765
5    135207382    rs2304080    C    T    546.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=27.33;SNPEFF_AMINO_ACID_CHANGE=A164;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_135207150_135207407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A48;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433282    GT:AD:DP:GQ:PL    1/1:0,20:20:48.12:580,48,0
5    135215575    rs2269926    A    T    624.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425402    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:657,48,0
5    135215835    rs71857174    CT    C    42.89    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=12;FS=0.0;HRun=14;HaplotypeScore=62.1937;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=3.57;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420621    GT:AD:DP:GQ:PL    0/1:7,5:12:31.38:82,0,31
5    135276049    rs31549    G    A    253.13    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.381;QD=19.47;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522943    GT:AD:DP:GQ:PL    0/1:5,8:13:99:283,0,142
5    135276201    rs1160982    AGTT    A    4618.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.0;HRun=0;HaplotypeScore=416.089;IndelType=D;MQ=56.34;MQ0=0;QD=48.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522943    GT:AD:DP:GQ:PL    1/1:2,93:95:99:4618,280,0
5    135276314    rs40986    C    T    3805.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6551;MQ=57.55;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522943    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3806,286,0
5    135276701    rs31548    T    C    3359.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.81;MQ0=0;QD=27.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522943    GT:AD:DP:GQ:PL    1/1:0,124:124:99:3360,307,0
5    135276814    rs2066913    G    A    2885.36    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.404;DB;DP=185;Dels=0.0;FS=17.506;HRun=1;HaplotypeScore=4.5935;MQ=59.5;MQ0=0;MQRankSum=-0.285;QD=15.6;ReadPosRankSum=0.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522943    GT:AD:DP:GQ:PL    0/1:89,96:185:99:2915,0,2788
5    135276847    rs31547    T    C    6059.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=185;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.1273;MQ=59.38;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522943    GT:AD:DP:GQ:PL    1/1:0,185:185:99:6059,469,0
5    135277394    rs113530554    G    GT    2036.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.0;HRun=7;HaplotypeScore=152.1693;IndelType=I;MQ=59.37;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522943    GT:AD:DP:GQ:PL    1/1:12,54:66:99:2079,175,0
5    135277503    rs31546    G    A    800.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=38.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522943    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:833,63,0
5    135282832    rs31529    T    A    232.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512872    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:266,21,0
5    135282847    rs31528    G    A    60.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.58;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514447    GT:AD:DP:GQ:PL    0/1:4,3:7:90.05:90,0,119
5    135283222    rs977691    T    A    489.28    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=0.916;QD=22.24;ReadPosRankSum=0.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514447    GT:AD:DP:GQ:PL    0/1:7,15:22:99:519,0,205
5    135287029    rs31517    T    C    1807.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=30.13;SNPEFF_AMINO_ACID_CHANGE=I58V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_135286912_135287057;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274507    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1841,147,0
5    135365006    rs4976361    A    G    128.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305126    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
5    135379612    rs4976464    A    G    150.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=18.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305126    GT:AD:DP:GQ:PL    1/1:0,8:8:15.02:183,15,0
5    135382989    rs1442    G    C    4868.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=L217;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_135382963_135383109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305126    GT:AD:DP:GQ:PL    1/1:1,136:137:99:4868,361,0
5    135389433    rs13159365    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509749    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    135390242    rs45489201    A    G    367.78    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.156;QD=21.63;ReadPosRankSum=-0.553;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFBI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509749    GT:AD:DP:GQ:PL    0/1:6,11:17:99:398,0,155
5    135513085    rs55765823    T    TC    3153.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=0;HaplotypeScore=173.5114;IndelType=I;MQ=60.51;MQ0=0;QD=45.05;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=SMAD5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000545279    GT:AD:DP:GQ:PL    1/1:1,69:70:99:3196,202,0
5    136315200    rs3217011    AT    A    1534.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=1;HaplotypeScore=110.227;IndelType=D;MQ=61.1;MQ0=0;QD=39.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282223    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1577,114,0
5    136320758    rs17521219    A    G    537.66    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.319;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=12.8;ReadPosRankSum=0.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508642    GT:AD:DP:GQ:PL    0/1:22,20:42:99:568,0,689
5    136328367    rs3777224    C    T    292.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.051;DB;DP=30;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=1.892;MQ=60.0;MQ0=0;MQRankSum=-0.023;QD=9.76;ReadPosRankSum=2.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282223    GT:AD:DP:GQ:PL    0/1:20,10:30:99:323,0,488
5    136602444    rs35164765    T    A    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509293    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
5    136969637    rs7713180    A    G    3028.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=35.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502381    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3061,226,0
5    136969953    rs2301709    C    T    498.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=58.45;MQ0=0;MQRankSum=1.504;QD=33.22;ReadPosRankSum=0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505853    GT:AD:DP:GQ:PL    1/1:1,14:15:21.45:531,21,0
5    136975687    rs2074348    G    A    751.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:785,57,0
5    136975819    rs4370266    A    G    129.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
5    136997776    rs143357420    AC    A    652.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=3;HaplotypeScore=257.2041;IndelType=D;MQ=47.04;MQ0=0;QD=21.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    1/1:12,19:31:57.17:695,57,0
5    136997779    .    CT    C    40.83    QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.054;DP=30;FS=3.332;HRun=1;HaplotypeScore=321.0925;IndelType=D;MQ=45.55;MQ0=0;MQRankSum=-1.03;QD=1.36;ReadPosRankSum=1.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    0/1:21,9:30:6.07:79,0,6
5    136997803    rs150677279    A    AAAAG    938.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=192.9195;IndelType=I;MQ=31.29;MQ0=0;QD=46.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    1/1:8,6:20:60.13:981,60,0
5    137013106    rs2967791    C    T    457.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:490,36,0
5    137013350    rs112292887    CA    C    32.52    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=53;FS=0.0;HRun=14;HaplotypeScore=274.384;IndelType=D;MQ=55.02;MQ0=0;MQRankSum=0.182;QD=0.61;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    0/1:44,8:53:71.54:72,0,569
5    137027953    rs2301710    A    T    209.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
5    137028029    rs2905608    T    C    782.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=H39R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137027974_137028136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541417    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:816,60,0
5    137056027    rs6887727    T    C    793.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.267;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=1.067;QD=29.38;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309755    GT:AD:DP:GQ:PL    1/1:1,26:27:33.63:826,34,0
5    137206560    rs41431944    A    C    2375.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=30.07;SNPEFF_AMINO_ACID_CHANGE=K74Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137206130_137206696;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239926    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2409,190,0
5    137223172    rs4288    G    A    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503748    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,113
5    137241856    rs700605    T    C    805.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290431    GT:AD:DP:GQ:PL    1/1:0,22:22:66.20:838,66,0
5    137243696    rs732900    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414094    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    137244517    rs1880458    G    A    1434.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_AMINO_ACID_CHANGE=V370I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137244454_137244635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350250    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1467,108,0
5    137257288    rs4304074    A    G    1563.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290431    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1596,120,0
5    137259179    rs12187140    T    C    1948.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=L406P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137259109_137259210;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508638    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1981,144,0
5    137259251    rs13188503    C    T    1023.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290431    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1056,78,0
5    137259335    rs34615501    C    G    107.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.94;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290431    GT:AD:DP:GQ:PL    0/1:2,4:6:67.18:138,0,67
5    137271968    rs7701617    T    G    811.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000033079    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:845,66,0
5    137281708    rs1125979    A    C    1889.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508883    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1922,144,0
5    137282125    rs4240363    G    C    382.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508883    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:415,30,0
5    137292133    rs3836896    C    CA    139.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=7;HaplotypeScore=10.3784;IndelType=I;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000033079    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:181,15,0
5    137295823    rs9327802    T    C    1470.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.857;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.619;QD=29.42;ReadPosRankSum=-1.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000033079    GT:AD:DP:GQ:PL    1/1:2,48:50:48.76:1504,49,0
5    137323117    rs7714536    A    G    618.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000033079    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:652,48,0
5    137342589    rs3756686    T    C    510.61    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.084;DB;DP=31;Dels=0.0;FS=3.452;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.179;QD=16.47;ReadPosRankSum=0.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514310    GT:AD:DP:GQ:PL    0/1:14,17:31:99:541,0,441
5    137347403    rs12187885    G    A    374.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514310    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:408,30,0
5    137347498    rs10064910    G    A    1358.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=36.72;SNPEFF_AMINO_ACID_CHANGE=S169;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137347457_137347634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000033079    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1392,102,0
5    137354851    rs57706343    CA    C    502.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=62.7589;IndelType=D;MQ=61.29;MQ0=0;QD=20.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510804    GT:AD:DP:GQ:PL    1/1:3,21:24:62.98:545,63,0
5    137419728    rs4574537    T    C    169.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.067;DB;DP=14;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=12.08;ReadPosRankSum=0.068;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398754    GT:AD:DP:GQ:PL    0/1:7,7:14:99:199,0,242
5    137420376    rs4835762    T    C    901.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398754    GT:AD:DP:GQ:PL    1/1:0,27:27:75.21:935,75,0
5    137423338    rs59398956    C    CA    368.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.852;DB;DP=73;FS=0.0;HRun=25;HaplotypeScore=991.1139;IndelType=I;MQ=35.45;MQ0=0;MQRankSum=0.825;QD=5.05;ReadPosRankSum=-0.338;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398754    GT:AD:DP:GQ:PL    1/1:63,7:73:55.69:411,56,0
5    137423363    .    AG    A    673.06    PASS    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=6.11;DP=125;FS=14.066;HRun=1;HaplotypeScore=1357.8511;IndelType=D;MQ=39.62;MQ0=0;MQRankSum=-6.758;QD=5.38;ReadPosRankSum=-0.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398754    GT:AD:DP:GQ:PL    0/1:108,15:125:99:712,0,596
5    137423366    .    AAG    A    232.40    QDFilter2    AB=0.956;AC=1;AF=0.50;AN=2;BaseQRankSum=5.109;DP=130;FS=5.666;HRun=0;HaplotypeScore=1441.1729;IndelType=D;MQ=40.59;MQ0=0;MQRankSum=-5.708;QD=1.79;ReadPosRankSum=-1.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398754    GT:AD:DP:GQ:PL    0/1:124,6:130:99:271,0,1955
5    137423367    .    AG    A    503.31    PASS    AB=0.962;AC=1;AF=0.50;AN=2;BaseQRankSum=7.441;DP=125;FS=11.083;HRun=1;HaplotypeScore=1363.231;IndelType=D;MQ=40.98;MQ0=0;MQRankSum=-6.51;QD=4.03;ReadPosRankSum=-2.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398754    GT:AD:DP:GQ:PL    0/1:120,5:125:99:542,0,1415
5    137426447    rs6596422    G    A    552.12    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=2.667;DB;DP=47;Dels=0.0;FS=4.647;HRun=0;HaplotypeScore=1.8136;MQ=59.41;MQ0=0;MQRankSum=0.664;QD=11.75;ReadPosRankSum=-0.439;SNPEFF_AMINO_ACID_CHANGE=A247;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137426217_137427199;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398754    GT:AD:DP:GQ:PL    0/1:29,18:47:99:582,0,886
5    137426768    rs12520886    C    T    219.09    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.275;DB;DP=37;Dels=0.0;FS=1.491;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.92;ReadPosRankSum=0.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504809    GT:AD:DP:GQ:PL    0/1:26,11:37:99:249,0,839
5    137427274    rs3860103    G    C    71.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.27;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398754    GT:AD:DP:GQ:PL    0/1:2,3:5:66.50:101,0,66
5    137451631    rs217266    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265191    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
5    137464826    rs217275    A    C    46.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=7.76;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511353    GT:AD:DP:GQ:PL    0/1:3,3:6:76.56:77,0,105
5    137475787    rs423258    C    T    606.98    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DB;DP=53;Dels=0.0;FS=6.472;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.641;QD=11.45;ReadPosRankSum=-0.623;SNPEFF_AMINO_ACID_CHANGE=V1228;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137475455_137475855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254900    GT:AD:DP:GQ:PL    0/1:31,22:53:99:637,0,1055
5    137476416    rs412051    T    C    5404.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4694;MQ=59.7;MQ0=0;QD=35.09;SNPEFF_AMINO_ACID_CHANGE=Q1198R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137476394_137476571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254900    GT:AD:DP:GQ:PL    1/1:1,152:154:99:5404,415,0
5    137480666    rs217263    G    C    54.42    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=4.95;ReadPosRankSum=-1.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254900    GT:AD:DP:GQ:PL    0/1:8,3:11:84.42:84,0,293
5    137485292    rs217270    C    T    626.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254900    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:659,48,0
5    137486426    rs217272    T    C    1072.15    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=85;Dels=0.0;FS=2.906;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=12.61;ReadPosRankSum=1.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254900    GT:AD:DP:GQ:PL    0/1:43,42:85:99:1102,0,1388
5    137498740    .    A    AGGAAGAAAGAC    679.48    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=27.4526;IndelType=I;MQ=42.29;MQ0=0;QD=135.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428808    GT:AD:DP:GQ:PL    1/1:0,4:5:15.05:721,15,0
5    137501312    rs2269956    G    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425764    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    137501396    rs2269957    A    C    102.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.94;MQ0=0;MQRankSum=-0.72;QD=17.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425764    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:132,0,67
5    137506434    rs13155519    G    A    252.80    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.608;DB;DP=14;Dels=0.0;FS=6.803;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=18.06;ReadPosRankSum=-0.225;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430331    GT:AD:DP:GQ:PL    0/1:6,8:14:99:283,0,167
5    137507104    rs34106093    TA    T    93.10    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.754;DB;DP=45;FS=3.01;HRun=16;HaplotypeScore=312.1959;IndelType=D;MQ=56.14;MQ0=0;MQRankSum=-2.663;QD=2.07;ReadPosRankSum=0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230901    GT:AD:DP:GQ:PL    0/1:20,21:45:99:132,0,102
5    137513369    rs113206847    G    GAA    597.93    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.598;DB;DP=64;FS=1.688;HRun=12;HaplotypeScore=315.2301;IndelType=I;MQ=58.36;MQ0=0;MQRankSum=0.452;QD=9.34;ReadPosRankSum=-1.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230901    GT:AD:DP:GQ:PL    0/1:44,17:64:99:637,0,600
5    137661434    rs3734165    T    C    292.03    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.286;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=15.37;ReadPosRankSum=1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504831    GT:AD:DP:GQ:PL    0/1:9,10:19:99:322,0,319
5    137665323    rs3734166    G    A    1119.56    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=0.672;DB;DP=98;Dels=0.0;FS=3.55;HRun=0;HaplotypeScore=1.6644;MQ=58.35;MQ0=0;MQRankSum=0.186;QD=11.31;ReadPosRankSum=0.254;SNPEFF_AMINO_ACID_CHANGE=R70C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137665242_137665336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323760    GT:AD:DP:GQ:PL    0/1:58,40:98:99:1150,0,1744
5    137708434    rs4835678    C    T    772.61    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=3.382;DB;DP=51;Dels=0.0;FS=1.166;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.669;QD=15.15;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=I88;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137708363_137708530;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314358    GT:AD:DP:GQ:PL    0/1:25,26:51:99:803,0,705
5    137717213    rs10073922    G    A    514.41    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.414;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.063;QD=15.59;ReadPosRankSum=-0.63;SNPEFF_AMINO_ACID_CHANGE=E238;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137717205_137717279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314358    GT:AD:DP:GQ:PL    0/1:16,17:33:99:544,0,490
5    137717265    rs6865472    G    A    1094.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_AMINO_ACID_CHANGE=A256T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137717205_137717279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314358    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1128,84,0
5    137735754    rs4835680    A    T    366.88    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.103;QD=12.65;ReadPosRankSum=0.908;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504095    GT:AD:DP:GQ:PL    0/1:17,12:29:99:397,0,584
5    137754695    rs7726234    T    C    1150.16    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.786;MQ=59.68;MQ0=0;MQRankSum=-0.809;QD=15.76;ReadPosRankSum=-1.121;SNPEFF_AMINO_ACID_CHANGE=G1163;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137754642_137754921;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314358    GT:AD:DP:GQ:PL    0/1:29,43:73:99:1180,0,778
5    137763615    rs2240334    A    C    1345.61    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.447;DB;DP=91;Dels=0.0;FS=0.882;HRun=0;HaplotypeScore=0.9998;MQ=59.75;MQ0=0;MQRankSum=0.178;QD=14.79;ReadPosRankSum=0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505756    GT:AD:DP:GQ:PL    0/1:42,49:91:99:1376,0,1330
5    137763798    rs17599026    C    T    1306.62    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.413;DB;DP=130;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.9766;MQ=59.47;MQ0=0;MQRankSum=-2.078;QD=10.05;ReadPosRankSum=-0.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505756    GT:AD:DP:GQ:PL    0/1:78,51:130:99:1337,0,2449
5    137765759    rs2269948    T    C    216.10    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=19.65;ReadPosRankSum=1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505756    GT:AD:DP:GQ:PL    0/1:4,7:11:99:246,0,121
5    137776931    rs2269947    C    T    225.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=2.616;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=18.76;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314358    GT:AD:DP:GQ:PL    0/1:4,8:12:99:255,0,116
5    137777269    rs12516269    A    G    82.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314358    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:113,0,29
5    137780336    rs4835794    T    C    705.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464751    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:739,57,0
5    137780368    rs2240331    C    A    231.19    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=12.84;ReadPosRankSum=1.999;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464751    GT:AD:DP:GQ:PL    0/1:10,8:18:99:261,0,322
5    137802404    rs11743810    C    T    1374.29    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.716;DB;DP=98;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.5885;MQ=59.34;MQ0=0;MQRankSum=-0.224;QD=14.02;ReadPosRankSum=-1.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239938    GT:AD:DP:GQ:PL    0/1:48,50:98:99:1404,0,1420
5    137844274    rs2242599    A    G    688.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.463;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.59;MQ0=0;MQRankSum=1.995;QD=12.29;ReadPosRankSum=-1.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503183    GT:AD:DP:GQ:PL    0/1:28,28:56:99:718,0,968
5    137846155    rs4835685    A    G    326.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503183    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
5    137847082    rs35404194    C    T    148.67    HaplotypeScoreFilter13    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=23.1962;MQ=50.39;MQ0=0;MQRankSum=0.0;QD=11.44;ReadPosRankSum=-0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503183    GT:AD:DP:GQ:PL    0/1:1,12:13:1.67:177,0,2
5    137849526    rs10077407    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514005    GT:AD:DP:GQ:PL    0/1:2,2:4:58.38:69,0,58
5    137892170    rs10117    G    A    1639.13    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=2.106;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=14.25;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=L598;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137892141_137892281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541333    GT:AD:DP:GQ:PL    0/1:56,59:115:99:1669,0,1714
5    137902339    rs1042665    T    C    859.59    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=0.178;DB;DP=83;Dels=0.0;FS=5.894;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.375;QD=10.36;ReadPosRankSum=-1.162;SNPEFF_AMINO_ACID_CHANGE=K269;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_137902315_137902407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541333    GT:AD:DP:GQ:PL    0/1:47,36:83:99:890,0,1532
5    137903084    rs256014    A    G    122.01    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=7.63;ReadPosRankSum=-1.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504810    GT:AD:DP:GQ:PL    0/1:10,6:16:99:152,0,339
5    137909674    rs141964970    GAGA    G    301.51    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=70.1271;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=-0.437;QD=23.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297185    GT:AD:DP:GQ:PL    0/1:5,8:13:99:341,0,122
5    138147943    rs11552054    A    C    374.83    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=3.21;DB;DP=37;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=1.8625;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=10.13;ReadPosRankSum=2.145;SNPEFF_AMINO_ACID_CHANGE=L150;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_138147872_138147991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000518245    GT:AD:DP:GQ:PL    0/1:23,14:37:99:405,0,706
5    138148064    rs13154573    T    C    201.29    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.078;DB;DP=23;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=1.7791;MQ=58.99;MQ0=0;MQRankSum=-1.519;QD=8.75;ReadPosRankSum=-2.078;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517980    GT:AD:DP:GQ:PL    0/1:13,10:23:99:231,0,482
5    138160056    rs6860780    A    G    115.32    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302763    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:145,0,28
5    138221989    rs288028    G    C    1149.25    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.592;DB;DP=103;Dels=0.0;FS=2.79;HRun=0;HaplotypeScore=1.7886;MQ=59.55;MQ0=0;MQRankSum=0.54;QD=11.16;ReadPosRankSum=-0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302763    GT:AD:DP:GQ:PL    0/1:56,47:103:99:1179,0,1650
5    138253220    rs66467400    TTTTA    T    271.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=49.1587;IndelType=D;MQ=50.18;MQ0=0;MQRankSum=-1.001;QD=30.12;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302763    GT:AD:DP:GQ:PL    0/1:3,6:9:99:310,0,213
5    138266546    rs1059110    G    A    730.90    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=2.631;DB;DP=68;Dels=0.0;FS=0.97;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.701;QD=10.75;ReadPosRankSum=0.135;SNPEFF_AMINO_ACID_CHANGE=S15;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_138266519_138266624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520520    GT:AD:DP:GQ:PL    0/1:41,27:68:99:761,0,1088
5    138356756    rs10077896    G    A    241.64    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.337;DB;DP=22;Dels=0.0;FS=2.643;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.134;QD=10.98;ReadPosRankSum=1.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265195    GT:AD:DP:GQ:PL    0/1:13,9:22:99:272,0,440
5    138356775    rs10077796    C    A    271.82    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=26;Dels=0.0;FS=2.038;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.026;QD=10.45;ReadPosRankSum=0.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265195    GT:AD:DP:GQ:PL    0/1:16,10:26:99:302,0,524
5    138386859    rs3828600    C    A    196.73    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.33;MQ0=0;MQRankSum=0.225;QD=14.05;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265195    GT:AD:DP:GQ:PL    0/1:6,8:14:99:227,0,206
5    138456815    rs3088052    T    C    1451.15    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.273;DB;DP=137;Dels=0.0;FS=11.589;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=0.638;QD=10.59;ReadPosRankSum=0.777;SNPEFF_AMINO_ACID_CHANGE=T30;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_138456724_138456862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537511    GT:AD:DP:GQ:PL    0/1:83,54:137:99:1481,0,2491
5    138456994    rs11750382    G    A    605.68    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.108;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;MQRankSum=-0.117;QD=14.77;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265195    GT:AD:DP:GQ:PL    0/1:21,20:41:99:636,0,710
5    138642997    rs112107315    A    AT    316.72    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=13;FS=0.0;HRun=5;HaplotypeScore=59.1437;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=0.423;QD=24.36;ReadPosRankSum=-0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502499    GT:AD:DP:GQ:PL    0/1:3,10:13:57.65:356,0,58
5    138643062    rs12153162    T    A    342.76    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=3.012;DB;DP=46;Dels=0.0;FS=5.909;HRun=7;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.986;QD=7.45;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502499    GT:AD:DP:GQ:PL    0/1:19,27:46:99:373,0,649
5    138713959    rs6596474    A    C    365.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.49;SNPEFF_AMINO_ACID_CHANGE=S421A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_138713911_138714040;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC23A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348729    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:399,30,0
5    138718476    rs11242461    T    C    71.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1280I22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302125    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
5    138723112    rs140286735    C    CTCCA    552.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=27.7375;IndelType=I;MQ=53.95;MQ0=0;QD=69.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135457.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434752    GT:AD:DP:GQ:PL    1/1:1,7:8:24.08:594,24,0
5    138724126    rs67607771    TG    T    183.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=37.6916;IndelType=D;MQ=57.05;MQ0=0;QD=22.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135457.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434752    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:226,21,0
5    138724457    rs9327846    A    G    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135457.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434752    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    138731979    rs6596478    T    C    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302091    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    138732103    rs4365836    A    T    170.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302091    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
5    138733108    rs6865970    A    C    74.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451821    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
5    138856982    rs7380824    C    T    1001.75    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=75;Dels=0.0;FS=8.166;HRun=0;HaplotypeScore=1.5362;MQ=59.69;MQ0=0;MQRankSum=-0.864;QD=13.36;ReadPosRankSum=-2.243;SNPEFF_AMINO_ACID_CHANGE=R293Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_138856914_138857100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM173;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330794    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1032,0,1081
5    138857919    rs1131769    T    C    998.21    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.699;DB;DP=81;Dels=0.0;FS=11.779;HRun=0;HaplotypeScore=4.5007;MQ=59.43;MQ0=0;MQRankSum=-0.694;QD=12.32;ReadPosRankSum=-0.828;SNPEFF_AMINO_ACID_CHANGE=H232R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_138857855_138858093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM173;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330794    GT:AD:DP:GQ:PL    0/1:47,34:81:99:1028,0,1520
5    138857925    rs78233829    C    G    953.46    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.399;DB;DP=81;Dels=0.0;FS=16.732;HRun=0;HaplotypeScore=3.6341;MQ=59.43;MQ0=0;MQRankSum=-0.293;QD=11.77;ReadPosRankSum=-0.63;SNPEFF_AMINO_ACID_CHANGE=G230A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_138857855_138858093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM173;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330794    GT:AD:DP:GQ:PL    0/1:48,33:81:99:983,0,1588
5    138860604    rs7380272    C    T    147.95    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.14;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502362    GT:AD:DP:GQ:PL    0/1:2,5:7:62.22:178,0,62
5    138861078    rs11554776    C    T    375.04    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.195;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.33;MQ0=0;MQRankSum=0.659;QD=13.39;ReadPosRankSum=-0.317;SNPEFF_AMINO_ACID_CHANGE=R71H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_138861063_138861289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM173;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330794    GT:AD:DP:GQ:PL    0/1:15,13:28:99:405,0,416
5    139061148    rs57638253    CT    C    492.56    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=4.037;DB;DP=29;FS=0.0;HRun=1;HaplotypeScore=74.0225;IndelType=D;MQ=60.74;MQ0=0;MQRankSum=0.676;QD=16.98;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXXC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502295    GT:AD:DP:GQ:PL    0/1:14,15:29:99:532,0,513
5    139192702    rs10054631    C    T    167.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274710    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:201,15,0
5    139201382    rs7701014    G    A    376.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.96;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274710    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:410,33,0
5    139202400    rs35306338    A    G    320.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.66;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274710    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:353,27,0
5    139213195    rs117273720    T    G    1125.01    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.804;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.58;MQ=59.75;MQ0=0;MQRankSum=0.344;QD=12.36;ReadPosRankSum=1.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274710    GT:AD:DP:GQ:PL    0/1:43,48:91:99:1155,0,1476
5    139213452    rs4912884    A    G    1204.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.34;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274710    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1237,96,0
5    139215386    rs62383878    A    C    1866.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=112;DS;Dels=0.0;FS=2.586;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.164;QD=16.67;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274710    GT:AD:DP:GQ:PL    0/1:48,64:112:99:1897,0,1488
5    139216901    rs11440487    A    AG    841.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=60.6294;IndelType=I;MQ=59.39;MQ0=0;QD=42.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274710    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:884,60,0
5    139239216    .    C    T    77.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.46;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289409    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:108,0,30
5    139245086    rs1800954    A    G    224.63    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.191;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=9.36;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518130    GT:AD:DP:GQ:PL    0/1:14,10:24:99:255,0,391
5    139251469    rs1800953    T    G    268.46    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=20;Dels=0.0;FS=4.964;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.216;QD=13.42;ReadPosRankSum=1.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289409    GT:AD:DP:GQ:PL    0/1:11,9:20:99:298,0,383
5    139260428    rs889022    T    C    621.66    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.049;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.291;QD=12.43;ReadPosRankSum=-0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289409    GT:AD:DP:GQ:PL    0/1:26,24:50:99:652,0,794
5    139494756    .    A    C    43.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DP=7;Dels=0.0;FS=3.68;HRun=5;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.754;QD=6.18;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PURA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502351    GT:AD:DP:GQ:PL    0/1:3,4:7:73.27:73,0,104
5    139574050    rs11538394    G    A    951.82    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.289;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=13.79;ReadPosRankSum=1.156;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504227    GT:AD:DP:GQ:PL    0/1:36,33:69:99:982,0,965
5    139660916    rs3777095    G    A    306.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261813    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:340,27,0
5    139661279    rs6893253    T    C    85.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261813    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
5    139740454    rs34507975    C    T    294.65    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.874;DB;DP=16;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=18.42;ReadPosRankSum=1.464;SNPEFF_AMINO_ACID_CHANGE=H120;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_139740325_139740557;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230993    GT:AD:DP:GQ:PL    0/1:6,10:16:99:325,0,175
5    139745154    rs6860077    T    C    901.37    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.77;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.257;QD=15.81;ReadPosRankSum=1.618;SNPEFF_AMINO_ACID_CHANGE=I556;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_139745105_139745154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432095    GT:AD:DP:GQ:PL    0/1:27,30:57:99:931,0,900
5    139820028    rs3822328    G    T    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKHD1-EIF4EBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532219    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:75,0,33
5    139876028    rs11370973    C    CT    166.76    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=19;FS=0.0;HRun=12;HaplotypeScore=146.9979;IndelType=I;MQ=29.0;MQ0=0;MQRankSum=0.449;QD=8.78;ReadPosRankSum=1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKHD1-EIF4EBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532219    GT:AD:DP:GQ:PL    0/1:14,5:19:99:206,0,162
5    139917800    rs111893699    A    G    1142.56    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.039;DB;DP=92;Dels=0.0;FS=0.79;HRun=0;HaplotypeScore=1.8606;MQ=59.75;MQ0=0;MQRankSum=2.44;QD=12.42;ReadPosRankSum=0.577;SNPEFF_AMINO_ACID_CHANGE=N1126S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_139917671_139917846;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431508    GT:AD:DP:GQ:PL    0/1:49,43:92:99:1173,0,1443
5    139936677    .    TAC    T    210.55    PASS    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DP=82;FS=114.911;HRun=0;HaplotypeScore=615.6366;IndelType=D;MQ=51.42;MQ0=0;MQRankSum=1.53;QD=2.57;ReadPosRankSum=3.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354402    GT:AD:DP:GQ:PL    0/1:55,23:82:99:250,0,1323
5    139936680    rs10534174    ACC    A    666.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.0;HRun=13;HaplotypeScore=590.3454;IndelType=D;MQ=51.31;MQ0=0;QD=8.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354402    GT:AD:DP:GQ:PL    1/1:48,29:81:82.41:709,82,0
5    139936760    rs250426    G    T    883.74    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.508;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=53.66;MQ0=0;MQRankSum=2.032;QD=11.48;ReadPosRankSum=-0.724;SNPEFF_AMINO_ACID_CHANGE=V53;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_139936732_139936857;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336283    GT:AD:DP:GQ:PL    0/1:37,40:77:99:914,0,1107
5    139936980    rs250427    A    G    90.40    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.55;MQ0=0;MQRankSum=1.333;QD=5.65;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354402    GT:AD:DP:GQ:PL    0/1:9,7:16:99:120,0,302
5    139940233    rs250431    G    A    973.08    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.663;DB;DP=68;Dels=0.0;FS=8.385;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.207;QD=14.31;ReadPosRankSum=0.559;SNPEFF_AMINO_ACID_CHANGE=H118;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_139940224_139940339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508496    GT:AD:DP:GQ:PL    0/1:32,36:68:99:1003,0,1044
5    139941228    rs250430    A    G    3175.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.59;MQ0=0;QD=30.83;SNPEFF_AMINO_ACID_CHANGE=C229R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_139941172_139941286;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412920    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3208,256,0
5    139941318    rs171632    A    G    1175.03    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.706;QD=19.26;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503850    GT:AD:DP:GQ:PL    0/1:21,40:61:99:1205,0,643
5    140011315    rs2563298    C    A    231.14    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=21;Dels=0.0;FS=3.222;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.176;QD=11.01;ReadPosRankSum=-0.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498971    GT:AD:DP:GQ:PL    0/1:10,11:21:99:261,0,362
5    140011468    rs4914    C    G    743.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=60;Dels=0.0;FS=0.998;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.083;QD=12.39;ReadPosRankSum=0.523;SNPEFF_AMINO_ACID_CHANGE=L367;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140011313_140012565;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302014    GT:AD:DP:GQ:PL    0/1:30,30:60:99:773,0,903
5    140021482    rs11554680    C    T    511.47    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.015;QD=13.46;ReadPosRankSum=0.167;SNPEFF_AMINO_ACID_CHANGE=V114;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140021455_140021638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252100    GT:AD:DP:GQ:PL    0/1:18,20:38:99:541,0,512
5    140021858    rs12153256    A    T    80.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=16.14;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252102    GT:AD:DP:GQ:PL    0/1:2,3:5:58.39:111,0,58
5    140022436    rs3822356    A    G    357    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=31;Dels=0.0;FS=3.798;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.353;QD=11.52;ReadPosRankSum=0.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252102    GT:AD:DP:GQ:PL    0/1:17,14:31:99:387,0,492
5    140023238    rs17208187    C    G    2629.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=59.1;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=T299S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140023149_140023260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394671    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2662,199,0
5    140024042    rs753280    T    C    297.93    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=18.62;ReadPosRankSum=-1.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252102    GT:AD:DP:GQ:PL    0/1:6,10:16:99:328,0,191
5    140024432    rs702399    C    T    369.23    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=29;Dels=0.0;FS=5.238;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.022;QD=12.73;ReadPosRankSum=1.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252102    GT:AD:DP:GQ:PL    0/1:16,13:29:99:399,0,546
5    140024491    rs60115373    A    G    244.85    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=26;Dels=0.0;FS=24.095;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.24;QD=9.42;ReadPosRankSum=0.916;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252102    GT:AD:DP:GQ:PL    0/1:17,9:26:99:275,0,624
5    140027216    rs778593    T    C    108.57    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=57.39;MQ0=0;MQRankSum=0.572;QD=12.06;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252100    GT:AD:DP:GQ:PL    0/1:2,7:9:57.61:139,0,58
5    140027304    rs778594    T    C    211.14    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.296;QD=19.19;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252100    GT:AD:DP:GQ:PL    0/1:3,8:11:77.30:241,0,77
5    140027627    rs34449052    GTGTATGTA    G    302.28    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=261.3675;IndelType=D;MQ=46.1;MQ0=0;MQRankSum=0.193;QD=13.14;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252100    GT:AD:DP:GQ:PL    0/1:15,8:23:99:341,0,1041
5    140031537    rs1583005    G    A    888.64    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=48;Dels=0.0;FS=6.77;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.072;QD=18.51;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512827    GT:AD:DP:GQ:PL    0/1:22,26:48:99:919,0,754
5    140037272    rs778596    G    A    1100.05    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.818;DB;DP=103;Dels=0.0;FS=8.98;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=2.617;QD=10.68;ReadPosRankSum=-0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502899    GT:AD:DP:GQ:PL    0/1:63,40:103:99:1130,0,2082
5    140037460    rs6888409    G    T    41.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502899    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
5    140041704    .    T    C    1293.99    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DP=103;Dels=0.0;FS=4.044;HRun=0;HaplotypeScore=4.1176;MQ=59.33;MQ0=0;MQRankSum=-1.077;QD=12.56;ReadPosRankSum=-0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515015    GT:AD:DP:GQ:PL    0/1:55,47:103:99:1324,0,1700
5    140048209    rs2251860    T    C    762.67    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.557;DB;DP=62;Dels=0.0;FS=0.994;HRun=0;HaplotypeScore=0.9578;MQ=59.63;MQ0=0;MQRankSum=0.08;QD=12.3;ReadPosRankSum=-1.455;SNPEFF_AMINO_ACID_CHANGE=N131;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140048197_140048376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR55;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358337    GT:AD:DP:GQ:PL    0/1:34,28:62:99:793,0,1071
5    140048267    rs2530245    T    C    1731.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.58;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=C151R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140048197_140048376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358337    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1765,138,0
5    140048544    rs2286394    C    T    465.48    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=40;Dels=0.0;FS=1.261;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.949;QD=11.64;ReadPosRankSum=0.892;SNPEFF_AMINO_ACID_CHANGE=S210F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140048476_140048575;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358337    GT:AD:DP:GQ:PL    0/1:22,18:40:99:495,0,661
5    140054257    rs58302597    C    T    851.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.43;DB;DP=64;Dels=0.0;FS=5.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.378;QD=13.31;ReadPosRankSum=1.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506579    GT:AD:DP:GQ:PL    0/1:32,32:64:99:882,0,1078
5    140054485    rs2530241    C    T    1202.28    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.578;DB;DP=66;Dels=0.0;FS=2.069;HRun=0;HaplotypeScore=0.9987;MQ=59.58;MQ0=0;MQRankSum=0.091;QD=18.22;ReadPosRankSum=1.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506579    GT:AD:DP:GQ:PL    0/1:27,39:66:99:1232,0,806
5    140058893    rs2073512    C    T    60.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=6.08;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502888    GT:AD:DP:GQ:PL    0/1:6,4:10:90.79:91,0,208
5    140062547    rs2530239    C    T    65.34    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.17;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307633    GT:AD:DP:GQ:PL    0/1:3,5:8:95.33:95,0,108
5    140073745    rs10515510    G    C    866.23    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.637;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;MQRankSum=2.113;QD=12.74;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506318    GT:AD:DP:GQ:PL    0/1:33,34:68:99:896,0,1126
5    140073883    rs6883035    G    A    349.33    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.68;DB;DP=24;Dels=0.0;FS=7.005;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.348;QD=14.56;ReadPosRankSum=-1.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503873    GT:AD:DP:GQ:PL    0/1:13,11:24:99:379,0,461
5    140075011    rs112793807    C    CAGTTGATAT    1495.56    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.874;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=179.8669;IndelType=I;MQ=50.53;MQ0=0;MQRankSum=-4.367;QD=51.57;ReadPosRankSum=-0.864;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503873    GT:AD:DP:GQ:PL    0/1:21,8:29:99:1535,0,1408
5    140076413    .    CT    C    51.72    QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DP=97;FS=0.0;HRun=22;HaplotypeScore=807.5303;IndelType=D;MQ=44.71;MQ0=0;MQRankSum=-2.81;QD=0.53;ReadPosRankSum=-1.006;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502303    GT:AD:DP:GQ:PL    0/1:63,19:97:90.75:91,0,392
5    140077699    rs2530234    A    G    731.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502303    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:764,57,0
5    140080298    rs801168    T    C    210.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=15.07;ReadPosRankSum=0.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230771    GT:AD:DP:GQ:PL    0/1:7,7:14:99:241,0,247
5    140081791    rs809635    A    G    525.22    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.701;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4774;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=13.82;ReadPosRankSum=-0.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230771    GT:AD:DP:GQ:PL    0/1:21,17:38:99:555,0,678
5    140083744    rs17286731    G    A    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230771    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:70,0,69
5    140165624    rs3756342    G    A    32.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=8.08;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378133    GT:AD:DP:GQ:PL    0/1:2,2:4:60.11:62,0,60
5    140167463    rs3733710    C    T    706.60    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.824;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.7;MQ0=1;MQRankSum=-0.161;QD=12.4;ReadPosRankSum=0.467;SNPEFF_AMINO_ACID_CHANGE=L530;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140165876_140168446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378133    GT:AD:DP:GQ:PL    0/1:33,24:57:99:737,0,1082
5    140168070    rs2240696    A    G    489.05    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.431;DB;DP=41;Dels=0.0;FS=1.227;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.556;QD=11.93;ReadPosRankSum=0.588;SNPEFF_AMINO_ACID_CHANGE=Y732C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140165876_140168446;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378133    GT:AD:DP:GQ:PL    0/1:22,19:41:99:519,0,707
5    140168151    rs2240695    G    T    625.31    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.759;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.642;QD=19.54;ReadPosRankSum=1.226;SNPEFF_AMINO_ACID_CHANGE=C759F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140165876_140168446;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378133    GT:AD:DP:GQ:PL    0/1:12,20:32:99:655,0,327
5    140174622    rs9686540    G    A    890.91    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.292;DB;DP=59;Dels=0.0;FS=5.483;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.346;QD=15.1;ReadPosRankSum=-2.066;SNPEFF_AMINO_ACID_CHANGE=E25K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140174444_140177062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378132    GT:AD:DP:GQ:PL    0/1:25,34:59:99:921,0,777
5    140174865    rs11167600    G    C    2149.77    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=166;Dels=0.0;FS=2.832;HRun=1;HaplotypeScore=4.7739;MQ=58.44;MQ0=0;MQRankSum=1.514;QD=12.95;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=V106L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140174444_140177062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378132    GT:AD:DP:GQ:PL    0/1:86,79:166:99:2180,0,2458
5    140176415    .    C    T    1017.76    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.274;DP=77;Dels=0.0;FS=3.002;HRun=2;HaplotypeScore=3.5544;MQ=59.46;MQ0=0;MQRankSum=1.787;QD=13.22;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=F622;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140174444_140177062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378132    GT:AD:DP:GQ:PL    0/1:39,37:77:99:1048,0,1288
5    140176592    rs149822412    G    A    777.53    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.441;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9147;MQ=59.68;MQ0=0;MQRankSum=-0.182;QD=10.65;ReadPosRankSum=-0.5;SNPEFF_AMINO_ACID_CHANGE=R681;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140174444_140177062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378132    GT:AD:DP:GQ:PL    0/1:43,28:73:99:808,0,1359
5    140180737    rs3806845    C    T    657.54    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=43;Dels=0.0;FS=1.642;HRun=3;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.284;QD=15.29;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378132    GT:AD:DP:GQ:PL    0/1:18,25:43:99:688,0,559
5    140181734    rs3733708    A    G    1173.66    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.582;DB;DP=66;Dels=0.0;FS=2.09;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.234;QD=17.78;ReadPosRankSum=-2.698;SNPEFF_AMINO_ACID_CHANGE=I318V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140180783_140183176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522353    GT:AD:DP:GQ:PL    0/1:27,39:66:99:1204,0,815
5    140181892    rs3733707    T    C    796.23    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.061;DB;DP=64;Dels=0.0;FS=2.301;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.589;QD=12.44;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=A370;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140180783_140183176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522353    GT:AD:DP:GQ:PL    0/1:36,28:64:99:826,0,1188
5    140182101    rs7701755    G    T    1723.15    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=123;Dels=0.0;FS=19.988;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.76;QD=14.01;ReadPosRankSum=-1.31;SNPEFF_AMINO_ACID_CHANGE=S440I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140180783_140183176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522353    GT:AD:DP:GQ:PL    0/1:65,58:123:99:1753,0,1842
5    140183058    rs2240694    G    A    644.41    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.155;DB;DP=43;Dels=0.0;FS=1.267;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.693;QD=14.99;ReadPosRankSum=-1.291;SNPEFF_AMINO_ACID_CHANGE=C759Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140180783_140183176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522353    GT:AD:DP:GQ:PL    0/1:19,23:43:99:674,0,567
5    140183325    rs2240693    G    C    68.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.741;QD=6.19;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532566    GT:AD:DP:GQ:PL    0/1:6,5:11:98.13:98,0,222
5    140186657    rs4151680    A    G    278.06    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.884;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.355;QD=17.38;ReadPosRankSum=-1.945;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520672    GT:AD:DP:GQ:PL    0/1:7,9:16:99:308,0,182
5    140187048    rs3822349    G    C    321.26    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=99;Dels=0.0;FS=19.935;HRun=0;HaplotypeScore=3.3126;MQ=52.64;MQ0=0;MQRankSum=-6.917;QD=3.25;ReadPosRankSum=0.182;SNPEFF_AMINO_ACID_CHANGE=R92;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140186672_140189169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356878    GT:AD:DP:GQ:PL    0/1:75,24:99:99:351,0,2413
5    140187102    rs3822347    A    G    938.20    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=101;Dels=0.0;FS=17.361;HRun=1;HaplotypeScore=0.0;MQ=52.91;MQ0=2;MQRankSum=-2.598;QD=9.29;ReadPosRankSum=1.798;SNPEFF_AMINO_ACID_CHANGE=V110;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140186672_140189169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356878    GT:AD:DP:GQ:PL    0/1:58,43:101:99:968,0,1715
5    140187322    rs3822346    C    T    694.15    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.2;DB;DP=61;Dels=0.0;FS=0.998;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.216;QD=11.38;ReadPosRankSum=-0.276;SNPEFF_AMINO_ACID_CHANGE=P184S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140186672_140189169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356878    GT:AD:DP:GQ:PL    0/1:34,26:61:99:724,0,1115
5    140188383    rs2337987    T    G    535.59    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.403;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=50.19;MQ0=1;MQRankSum=-2.401;QD=9.56;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=A537;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140186672_140189169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356878    GT:AD:DP:GQ:PL    0/1:31,25:56:99:566,0,990
5    140188401    rs2879086    A    G    691.19    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=59;Dels=0.0;FS=2.268;HRun=0;HaplotypeScore=3.569;MQ=50.36;MQ0=1;MQRankSum=-2.784;QD=11.72;ReadPosRankSum=0.84;SNPEFF_AMINO_ACID_CHANGE=P543;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140186672_140189169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356878    GT:AD:DP:GQ:PL    0/1:29,30:59:99:721,0,847
5    140188575    rs2879087    G    C    671.41    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8056;MQ=59.07;MQ0=0;MQRankSum=-2.328;QD=13.43;ReadPosRankSum=-1.086;SNPEFF_AMINO_ACID_CHANGE=S601;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140186672_140189169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356878    GT:AD:DP:GQ:PL    0/1:24,26:50:99:701,0,627
5    140201264    rs4151682    C    T    232.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.591;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=11.65;ReadPosRankSum=-1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394633    GT:AD:DP:GQ:PL    0/1:10,10:20:99:263,0,364
5    140201420    rs11958868    T    C    456.85    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.785;DB;DP=54;Dels=0.0;FS=1.126;HRun=0;HaplotypeScore=0.5784;MQ=59.22;MQ0=0;MQRankSum=-0.106;QD=8.46;ReadPosRankSum=0.531;SNPEFF_AMINO_ACID_CHANGE=L20;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140201361_140203811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378126    GT:AD:DP:GQ:PL    0/1:33,20:54:99:487,0,945
5    140203432    rs4141841    C    T    1274.89    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=1.752;DB;DP=72;Dels=0.0;FS=4.99;HRun=0;HaplotypeScore=0.9947;MQ=59.36;MQ0=0;MQRankSum=2.073;QD=17.71;ReadPosRankSum=-1.983;SNPEFF_AMINO_ACID_CHANGE=A691V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140201361_140203811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378126    GT:AD:DP:GQ:PL    0/1:26,45:72:99:1305,0,692
5    140209467    rs7710794    T    G    1004.41    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.052;DB;DP=60;Dels=0.0;FS=0.997;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=16.74;ReadPosRankSum=-0.455;SNPEFF_AMINO_ACID_CHANGE=V597;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140207563_140210070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529310    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1034,0,849
5    140214381    rs10067182    G    A    705.04    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.137;DB;DP=111;Dels=0.0;FS=7.407;HRun=3;HaplotypeScore=0.0;MQ=44.93;MQ0=10;MQRankSum=-5.398;QD=6.35;ReadPosRankSum=-2.016;SNPEFF_AMINO_ACID_CHANGE=R138K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140213969_140216338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378125    GT:AD:DP:GQ:PL    0/1:66,45:111:99:735,0,2047
5    140216042    rs61730623    G    A    1148.75    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.604;DB;DP=73;Dels=0.0;FS=0.879;HRun=1;HaplotypeScore=0.8321;MQ=59.43;MQ0=0;MQRankSum=0.205;QD=15.74;ReadPosRankSum=-1.192;SNPEFF_AMINO_ACID_CHANGE=E692K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140213969_140216338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378125    GT:AD:DP:GQ:PL    0/1:33,40:73:99:1179,0,955
5    140221139    rs3756331    G    A    1949.90    PASS    AB=0.374;AC=1;AF=0.50;AN=2;BaseQRankSum=3.801;DB;DP=164;Dels=0.0;FS=7.085;HRun=2;HaplotypeScore=0.8667;MQ=42.66;MQ0=21;MQRankSum=-8.313;QD=11.89;ReadPosRankSum=1.512;SNPEFF_AMINO_ACID_CHANGE=S78N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140220907_140223351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378123    GT:AD:DP:GQ:PL    0/1:61,102:164:99:1980,0,1622
5    140222641    rs6580012    A    G    694.97    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.55;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=12.64;ReadPosRankSum=0.399;SNPEFF_AMINO_ACID_CHANGE=K579E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140220907_140223351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378123    GT:AD:DP:GQ:PL    0/1:26,29:55:99:725,0,808
5    140227876    rs251352    G    A    209.17    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.794;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=13.94;ReadPosRankSum=-1.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378123    GT:AD:DP:GQ:PL    0/1:8,7:15:99:239,0,280
5    140228164    rs251353    C    A    1000.63    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.538;DB;DP=82;Dels=0.0;FS=0.892;HRun=0;HaplotypeScore=1.9661;MQ=57.15;MQ0=0;MQRankSum=-0.274;QD=12.2;ReadPosRankSum=-0.581;SNPEFF_AMINO_ACID_CHANGE=S28R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140227357_140233744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378122    GT:AD:DP:GQ:PL    0/1:44,38:82:99:1031,0,1189
5    140228410    rs17844322    A    G    410.50    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.71;DB;DP=109;Dels=0.0;FS=1.113;HRun=1;HaplotypeScore=0.9578;MQ=45.91;MQ0=0;MQRankSum=-7.929;QD=3.77;ReadPosRankSum=-0.408;SNPEFF_AMINO_ACID_CHANGE=V110;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140227357_140233744;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378122    GT:AD:DP:GQ:PL    0/1:75,34:109:99:440,0,2269
5    140228413    rs17844323    C    A    391.84    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=2.356;DB;DP=105;Dels=0.0;FS=2.614;HRun=1;HaplotypeScore=0.9578;MQ=46.03;MQ0=0;MQRankSum=-7.3;QD=3.73;ReadPosRankSum=-0.722;SNPEFF_AMINO_ACID_CHANGE=D111E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140227357_140233744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378122    GT:AD:DP:GQ:PL    0/1:72,33:105:99:422,0,2229
5    140229086    rs251354    C    G    1444.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.3;MQ0=1;QD=28.89;SNPEFF_AMINO_ACID_CHANGE=L336V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140227357_140233744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378122    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1477,117,0
5    140229368    rs251355    G    C    1412.64    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=112;Dels=0.0;FS=0.72;HRun=1;HaplotypeScore=0.7887;MQ=57.76;MQ0=0;MQRankSum=-0.422;QD=12.61;ReadPosRankSum=1.68;SNPEFF_AMINO_ACID_CHANGE=G430R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140227357_140233744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378122    GT:AD:DP:GQ:PL    0/1:54,58:112:99:1443,0,1513
5    140229526    rs251356    T    G    2892.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.7;MQ0=0;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=A482;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140227357_140233744;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378122    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2925,238,0
5    140230370    rs369636    A    C    1863.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_AMINO_ACID_CHANGE=K764Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140227357_140233744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378122    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1897,144,0
5    140230371    rs369639    A    C    1777.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=29.63;SNPEFF_AMINO_ACID_CHANGE=K764T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140227357_140233744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378122    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1811,141,0
5    140237109    rs251363    T    G    1150.76    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.243;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=55.07;MQ0=0;MQRankSum=-2.815;QD=14.94;ReadPosRankSum=-0.58;SNPEFF_AMINO_ACID_CHANGE=S492;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140235634_140238021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307360    GT:AD:DP:GQ:PL    0/1:30,47:77:99:1181,0,933
5    140237158    rs142356019    G    A    933.24    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.721;DB;DP=74;Dels=0.0;FS=7.761;HRun=0;HaplotypeScore=1.5779;MQ=56.25;MQ0=0;MQRankSum=-1.613;QD=12.61;ReadPosRankSum=1.418;SNPEFF_AMINO_ACID_CHANGE=V509M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140235634_140238021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307360    GT:AD:DP:GQ:PL    0/1:35,39:74:99:963,0,1077
5    140237387    rs251364    T    G    604.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.683;DB;DP=35;Dels=0.0;FS=11.24;HRun=2;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.117;QD=17.27;ReadPosRankSum=0.883;SNPEFF_AMINO_ACID_CHANGE=V585G;SNPEFF_CODON_CHANGE=gTt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140235634_140238021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307360    GT:AD:DP:GQ:PL    0/1:15,20:35:99:634,0,485
5    140242451    rs11321479    GC    G    380.55    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.85;DB;DP=16;FS=6.317;HRun=2;HaplotypeScore=59.7735;IndelType=D;MQ=60.19;MQ0=0;MQRankSum=0.788;QD=23.78;ReadPosRankSum=-1.031;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_140240341_140243224;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005609.17;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000502505    GT:AD:DP:GQ:PL    0/1:4,12:16:99:420,0,132
5    140242479    rs251369    T    A    180.30    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.742;QD=25.76;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=K166I;SNPEFF_CODON_CHANGE=aAa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140240341_140243224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005609.17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502505    GT:AD:DP:GQ:PL    0/1:1,6:7:21.16:210,0,21
5    140256920    rs115718636    G    C    742.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.153;DB;DP=65;Dels=0.0;FS=0.973;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.506;QD=11.42;ReadPosRankSum=0.475;SNPEFF_AMINO_ACID_CHANGE=P621;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140255058_140257424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398631    GT:AD:DP:GQ:PL    0/1:39,26:65:99:772,0,1086
5    140261677    rs59479    A    C    107.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.41;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307360    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,139
5    140262492    rs11744560    A    T    563.06    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=51;Dels=0.0;FS=1.083;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.335;QD=11.04;ReadPosRankSum=-0.01;SNPEFF_AMINO_ACID_CHANGE=T213;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140261854_140264247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289272    GT:AD:DP:GQ:PL    0/1:30,21:51:99:593,0,892
5    140263290    rs251380    T    G    957.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.486;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.43;MQ0=0;MQRankSum=-0.558;QD=13.68;ReadPosRankSum=1.085;SNPEFF_AMINO_ACID_CHANGE=A479;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140261854_140264247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289272    GT:AD:DP:GQ:PL    0/1:35,35:70:99:988,0,998
5    140307284    rs155361    G    A    1327.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.88;SNPEFF_AMINO_ACID_CHANGE=Q269;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140306478_140308910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHAC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253807    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1361,102,0
5    140307746    rs155820    C    G    696.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.712;DB;DP=60;Dels=0.0;FS=21.113;HRun=0;HaplotypeScore=1.9399;MQ=59.62;MQ0=0;MQRankSum=-0.303;QD=11.6;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=P423;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140306478_140308910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHAC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253807    GT:AD:DP:GQ:PL    0/1:29,29:60:99:726,0,928
5    140307969    rs246074    C    G    3588.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.315;MQ=59.33;MQ0=0;QD=36.99;SNPEFF_AMINO_ACID_CHANGE=L498V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140306478_140308910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHAC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253807    GT:AD:DP:GQ:PL    1/1:0,96:97:99:3588,265,0
5    140309016    rs155360    C    T    320.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307360    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:353,27,0
5    140346468    rs155364    T    A    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.59;SNPEFF_AMINO_ACID_CHANGE=P39;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140345820_140348916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHAC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289269    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
5    140346712    rs155808    T    C    239.76    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=22;Dels=0.0;FS=1.768;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.402;QD=10.9;ReadPosRankSum=2.204;SNPEFF_AMINO_ACID_CHANGE=L121;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140345820_140348916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHAC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289269    GT:AD:DP:GQ:PL    0/1:13,9:22:99:270,0,440
5    140347053    rs155807    C    T    486.91    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=32;Dels=0.0;FS=1.604;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.737;QD=15.22;ReadPosRankSum=-0.34;SNPEFF_AMINO_ACID_CHANGE=I234;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140345820_140348916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHAC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289269    GT:AD:DP:GQ:PL    0/1:15,17:32:99:517,0,460
5    140347398    rs12153295    C    T    322.19    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3204;MQ=59.57;MQ0=0;MQRankSum=-0.348;QD=7.49;ReadPosRankSum=0.654;SNPEFF_AMINO_ACID_CHANGE=C349;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140345820_140348916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHAC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289269    GT:AD:DP:GQ:PL    0/1:31,12:43:99:352,0,912
5    140474756    rs31853    G    A    330.38    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.147;DB;DP=35;Dels=0.0;FS=2.717;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.178;QD=9.44;ReadPosRankSum=-1.031;SNPEFF_AMINO_ACID_CHANGE=V128I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140474227_140476962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000194155    GT:AD:DP:GQ:PL    0/1:23,12:35:99:360,0,819
5    140475852    rs17844375    T    C    1503.67    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.581;DB;DP=146;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8625;MQ=42.37;MQ0=11;MQRankSum=0.983;QD=10.3;ReadPosRankSum=0.563;SNPEFF_AMINO_ACID_CHANGE=L493P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140474227_140476962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000194155    GT:AD:DP:GQ:PL    0/1:75,71:146:99:1534,0,1491
5    140476060    rs17844377    C    T    437.70    MQFilter40    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=50;Dels=0.0;FS=4.434;HRun=2;HaplotypeScore=0.8667;MQ=31.83;MQ0=24;MQRankSum=-0.623;QD=8.75;ReadPosRankSum=1.557;SNPEFF_AMINO_ACID_CHANGE=F562;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140474227_140476962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000194155    GT:AD:DP:GQ:PL    0/1:27,23:50:99:468,0,236
5    140476653    rs1047372    G    A    729.60    MQFilter40    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8857;MQ=22.39;MQ0=45;MQRankSum=-0.369;QD=6.03;ReadPosRankSum=0.036;SNPEFF_AMINO_ACID_CHANGE=G760D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140474227_140476962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000194155    GT:AD:DP:GQ:PL    0/1:71,50:121:99:760,0,930
5    140476654    rs145066448    C    A    732.28    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8857;MQ=22.29;MQ0=46;MQRankSum=-0.369;QD=6.0;ReadPosRankSum=-0.016;SNPEFF_AMINO_ACID_CHANGE=G760;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140474227_140476962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000194155    GT:AD:DP:GQ:PL    0/1:72,49:121:99:762,0,927
5    140476894    rs3776103    A    G    535.35    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.67;MQ0=0;MQRankSum=1.752;QD=19.83;ReadPosRankSum=0.271;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:11,16:27:99:565,0,367
5    140476905    rs3776102    A    G    427.13    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.713;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.94;MQ0=0;MQRankSum=1.271;QD=18.57;ReadPosRankSum=0.403;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:10,13:23:99:457,0,344
5    140476939    rs3776101    A    G    98.10    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.663;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.7;MQ0=0;MQRankSum=0.278;QD=8.92;ReadPosRankSum=-0.597;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,254
5    140480107    rs1055411    G    C    81.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.33;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194155    GT:AD:DP:GQ:PL    0/1:2,3:5:66.91:112,0,67
5    140480179    rs1055410    T    G    487.78    PASS    AB=0.192;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.276;DB;DP=26;Dels=0.0;FS=1.927;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.577;QD=18.76;ReadPosRankSum=1.121;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194155    GT:AD:DP:GQ:PL    0/1:5,21:26:99:518,0,150
5    140480355    rs31849    A    G    730.39    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.802;DB;DP=47;Dels=0.0;FS=2.485;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=15.54;ReadPosRankSum=0.011;SNPEFF_AMINO_ACID_CHANGE=K41R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:21,26:47:99:760,0,735
5    140480578    rs17844387    A    G    858.80    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=79;Dels=0.0;FS=8.043;HRun=0;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-0.764;QD=10.87;ReadPosRankSum=0.723;SNPEFF_AMINO_ACID_CHANGE=Q115;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:51,28:79:99:889,0,1544
5    140480852    rs12515688    G    A    922.41    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.187;DB;DP=50;Dels=0.0;FS=8.958;HRun=2;HaplotypeScore=0.8941;MQ=59.54;MQ0=0;MQRankSum=-0.62;QD=18.45;ReadPosRankSum=-0.389;SNPEFF_AMINO_ACID_CHANGE=E207K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:18,32:50:99:952,0,505
5    140481475    rs3733699    A    T    873.82    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.679;DB;DP=67;Dels=0.0;FS=5.176;HRun=1;HaplotypeScore=0.8667;MQ=56.43;MQ0=0;MQRankSum=2.099;QD=13.04;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=R414S;SNPEFF_CODON_CHANGE=agA/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:37,30:67:99:904,0,1308
5    140481594    rs17844392    T    C    1675.67    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.659;DB;DP=156;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.49;MQ0=2;MQRankSum=-5.901;QD=10.74;ReadPosRankSum=2.821;SNPEFF_AMINO_ACID_CHANGE=I454T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:84,72:156:99:1706,0,2184
5    140481913    rs17844397    C    T    495.43    MQFilter40    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.126;DB;DP=70;Dels=0.0;FS=4.246;HRun=2;HaplotypeScore=0.0;MQ=33.64;MQ0=0;MQRankSum=-0.979;QD=7.08;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=F560;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:34,36:70:99:525,0,725
5    140482013    rs13174972    G    A    265.16    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.486;DB;DP=55;Dels=0.0;FS=3.716;HRun=0;HaplotypeScore=1.367;MQ=30.22;MQ0=4;MQRankSum=-2.597;QD=4.82;ReadPosRankSum=1.604;SNPEFF_AMINO_ACID_CHANGE=G594S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:30,25:55:99:295,0,659
5    140482102    rs3896009    A    G    66.76    MQFilter40;QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.052;DB;DP=46;Dels=0.0;FS=4.076;HRun=1;HaplotypeScore=0.0;MQ=32.27;MQ0=5;MQRankSum=-2.685;QD=1.45;ReadPosRankSum=-0.017;SNPEFF_AMINO_ACID_CHANGE=E623;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:34,12:46:96.75:97,0,873
5    140482483    rs31848    G    A    1584.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.62;MQ0=41;QD=15.85;SNPEFF_AMINO_ACID_CHANGE=Q750;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140480234_140483406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    1/1:15,85:100:99:1618,147,0
5    140482691    rs31847    T    C    628.33    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.437;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.95;MQ0=0;MQRankSum=0.03;QD=12.82;ReadPosRankSum=-1.176;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231130    GT:AD:DP:GQ:PL    0/1:27,22:49:99:658,0,872
5    140502343    rs3733698    C    T    603.58    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=82;Dels=0.0;FS=3.058;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.862;QD=7.36;ReadPosRankSum=-1.845;SNPEFF_AMINO_ACID_CHANGE=P255S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140501581_140505201;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000194152    GT:AD:DP:GQ:PL    0/1:40,42:82:99:634,0,1281
5    140502344    rs3733697    C    T    591.45    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.454;DB;DP=82;Dels=0.0;FS=3.058;HRun=0;HaplotypeScore=0.8321;MQ=59.49;MQ0=0;MQRankSum=1.094;QD=7.21;ReadPosRankSum=-1.903;SNPEFF_AMINO_ACID_CHANGE=P255L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140501581_140505201;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000194152    GT:AD:DP:GQ:PL    0/1:40,42:82:99:621,0,1319
5    140503237    rs246669    A    G    479.72    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.411;DB;DP=52;Dels=0.0;FS=9.253;HRun=0;HaplotypeScore=0.0;MQ=41.74;MQ0=1;MQRankSum=-1.633;QD=9.23;ReadPosRankSum=-0.331;SNPEFF_AMINO_ACID_CHANGE=T553A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140501581_140505201;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000194152    GT:AD:DP:GQ:PL    0/1:27,25:52:99:510,0,742
5    140516407    rs17844422    G    A    2377.75    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.213;DB;DP=196;Dels=0.0;FS=1.179;HRun=1;HaplotypeScore=0.9933;MQ=53.44;MQ0=0;MQRankSum=2.505;QD=12.13;ReadPosRankSum=-0.478;SNPEFF_AMINO_ACID_CHANGE=S248N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140515665_140516663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537936    GT:AD:DP:GQ:PL    0/1:102,92:196:99:2408,0,2747
5    140516795    rs246726    C    T    1064.54    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.865;DB;DP=88;Dels=0.0;FS=15.658;HRun=0;HaplotypeScore=1.8665;MQ=42.44;MQ0=7;MQRankSum=0.094;QD=12.1;ReadPosRankSum=-1.52;SNPEFF_AMINO_ACID_CHANGE=G593;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140514800_140517703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231134    GT:AD:DP:GQ:PL    0/1:40,45:88:99:1095,0,822
5    140517174    rs400562    T    C    1080.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.096;DB;DP=82;Dels=0.0;FS=1.841;HRun=2;HaplotypeScore=0.9867;MQ=58.8;MQ0=0;MQRankSum=0.549;QD=13.18;ReadPosRankSum=-1.463;SNPEFF_AMINO_ACID_CHANGE=S720P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140514800_140517703;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231134    GT:AD:DP:GQ:PL    0/1:41,41:82:99:1111,0,1279
5    140531175    rs246707    T    C    5455.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.8455;MQ=46.23;MQ0=4;QD=30.82;SNPEFF_AMINO_ACID_CHANGE=V231A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140530484_140531482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542861    GT:AD:DP:GQ:PL    1/1:0,176:177:99:5455,460,0
5    140537024    rs189530365    C    T    1601.98    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=152;Dels=0.0;FS=4.117;HRun=0;HaplotypeScore=6.4472;MQ=47.74;MQ0=3;MQRankSum=-7.751;QD=10.54;ReadPosRankSum=-0.799;SNPEFF_AMINO_ACID_CHANGE=T483I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140535577_140538639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005754.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539533    GT:AD:DP:GQ:PL    0/1:78,73:152:99:1632,0,2352
5    140537031    rs191375190    T    C    1474.96    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.416;DB;DP=142;Dels=0.0;FS=4.395;HRun=1;HaplotypeScore=4.0101;MQ=48.62;MQ0=3;MQRankSum=-7.835;QD=10.39;ReadPosRankSum=0.777;SNPEFF_AMINO_ACID_CHANGE=A485;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140535577_140538639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005754.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539533    GT:AD:DP:GQ:PL    0/1:75,66:142:99:1505,0,2118
5    140537363    rs62378895    C    T    893.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.08;MQ0=36;QD=13.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231136    GT:AD:DP:GQ:PL    1/1:23,42:65:84.22:927,84,0
5    140558173    rs147858574    C    T    729.24    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.975;DB;DP=80;Dels=0.0;FS=2.038;HRun=0;HaplotypeScore=4.6436;MQ=34.38;MQ0=7;MQRankSum=-0.402;QD=9.12;ReadPosRankSum=-1.344;SNPEFF_AMINO_ACID_CHANGE=R186;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140557371_140560081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239444    GT:AD:DP:GQ:PL    0/1:50,30:80:99:759,0,1091
5    140559343    .    G    A    474.90    MQFilter40    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.852;DP=87;Dels=0.0;FS=1.471;HRun=0;HaplotypeScore=1.367;MQ=27.04;MQ0=13;MQRankSum=1.609;QD=5.46;ReadPosRankSum=0.7;SNPEFF_AMINO_ACID_CHANGE=L576;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140557371_140560081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239444    GT:AD:DP:GQ:PL    0/1:56,30:87:99:505,0,706
5    140559514    rs142690275    G    A    606.34    MQFilter40    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.254;DB;DP=53;Dels=0.0;FS=4.506;HRun=1;HaplotypeScore=1.7608;MQ=39.79;MQ0=2;MQRankSum=1.969;QD=11.44;ReadPosRankSum=0.782;SNPEFF_AMINO_ACID_CHANGE=E633;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140557371_140560081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239444    GT:AD:DP:GQ:PL    0/1:27,26:53:99:636,0,507
5    140559596    rs2697541    T    G    1846.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=50.88;MQ0=2;QD=26.0;SNPEFF_AMINO_ACID_CHANGE=L661V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140557371_140560081;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239444    GT:AD:DP:GQ:PL    1/1:0,71:71:99:1879,159,0
5    140561983    rs2204704    A    G    317.78    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.448;QD=24.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239444    GT:AD:DP:GQ:PL    0/1:1,12:13:8.66:347,0,9
5    140563574    rs2697534    A    G    2060.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.5873;MQ=28.07;MQ0=1;QD=23.96;SNPEFF_AMINO_ACID_CHANGE=S480;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140560980_140565793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361016    GT:AD:DP:GQ:PL    1/1:0,85:86:99:2093,210,0
5    140563616    rs17844647    G    A    718.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8094;MQ=17.95;MQ0=2;QD=14.08;SNPEFF_AMINO_ACID_CHANGE=Q494;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140560980_140565793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361016    GT:AD:DP:GQ:PL    1/1:0,51:51:95.65:751,96,0
5    140563658    rs2697533    A    G    148.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=15.16;MQ0=2;QD=5.3;SNPEFF_AMINO_ACID_CHANGE=A508;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140560980_140565793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361016    GT:AD:DP:GQ:PL    1/1:0,28:28:23.90:181,24,0
5    140567608    rs11167743    C    T    1580.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361016    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1613,120,0
5    140568034    rs139314273    C    CA    2522.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=1;HaplotypeScore=119.1098;IndelType=I;MQ=59.49;MQ0=0;QD=42.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361016    GT:AD:DP:GQ:PL    1/1:2,57:59:99:2565,172,0
5    140568796    rs2860540    A    G    872.69    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.634;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=26.33;MQ0=7;MQRankSum=-1.141;QD=18.18;ReadPosRankSum=1.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361016    GT:AD:DP:GQ:PL    1/1:2,46:48:66.77:906,67,0
5    140573844    .    C    T    227.92    MQFilter40    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=3.483;DP=83;Dels=0.0;FS=2.717;HRun=0;HaplotypeScore=0.8321;MQ=22.29;MQ0=37;MQRankSum=0.545;QD=2.75;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=T573;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140571942_140575215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239446    GT:AD:DP:GQ:PL    0/1:70,12:83:99:258,0,595
5    140573922    .    C    T    32.98    MQFilter40;QDFilter2    AB=0.953;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.285;DP=86;Dels=0.0;FS=9.84;HRun=0;HaplotypeScore=0.8321;MQ=15.42;MQ0=51;MQRankSum=1.581;QD=0.38;ReadPosRankSum=1.581;SNPEFF_AMINO_ACID_CHANGE=N599;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140571942_140575215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239446    GT:AD:DP:GQ:PL    0/1:82,4:86:62.97:63,0,469
5    140581129    .    C    T    332.02    MQFilter40    AC=2;AF=1.00;AN=2;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.4;MQ0=27;QD=8.3;SNPEFF_AMINO_ACID_CHANGE=G229;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140580080_140581852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHB11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536699    GT:AD:DP:GQ:PL    1/1:11,29:40:33.08:365,33,0
5    140683265    rs11952797    G    A    689.35    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.261;DB;DP=44;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=1.896;QD=15.67;ReadPosRankSum=-0.971;SNPEFF_AMINO_ACID_CHANGE=A56;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140682196_140683612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239451    GT:AD:DP:GQ:PL    0/1:19,25:44:99:719,0,633
5    140710705    rs2472647    G    A    2118.43    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=1.553;DB;DP=148;Dels=0.0;FS=3.861;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.226;QD=14.31;ReadPosRankSum=0.495;SNPEFF_AMINO_ACID_CHANGE=V152I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140710252_140712723;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378105    GT:AD:DP:GQ:PL    0/1:75,73:148:99:2148,0,2384
5    140712382    .    C    T    589.01    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=0.434;DP=155;Dels=0.0;FS=16.893;HRun=1;HaplotypeScore=0.8321;MQ=50.54;MQ0=1;MQRankSum=-8.575;QD=3.8;ReadPosRankSum=0.62;SNPEFF_AMINO_ACID_CHANGE=L711;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140710252_140712723;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378105    GT:AD:DP:GQ:PL    0/1:115,40:155:99:619,0,3680
5    140720516    rs35592458    C    G    1140.17    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=100;Dels=0.0;FS=2.854;HRun=1;HaplotypeScore=0.0;MQ=44.75;MQ0=1;MQRankSum=2.072;QD=11.4;ReadPosRankSum=-0.675;SNPEFF_AMINO_ACID_CHANGE=L660V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140718539_140720962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCDHGA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394576    GT:AD:DP:GQ:PL    0/1:55,45:100:99:1170,0,1420
5    140720707    .    C    T    45.22    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.973;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=50.83;MQ0=0;MQRankSum=-4.5;QD=0.69;ReadPosRankSum=-3.409;SNPEFF_AMINO_ACID_CHANGE=R723;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140718539_140720962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCDHGA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394576    GT:AD:DP:GQ:PL    0/1:55,11:66:75.22:75,0,1905
5    140725828    rs7736541    C    T    1517.99    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.69;DB;DP=118;Dels=0.0;FS=3.847;HRun=0;HaplotypeScore=2.8773;MQ=47.75;MQ0=3;MQRankSum=-2.092;QD=12.86;ReadPosRankSum=0.113;SNPEFF_AMINO_ACID_CHANGE=A743V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140723601_140726024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253812    GT:AD:DP:GQ:PL    0/1:52,64:118:99:1548,0,1279
5    140750044    rs6860609    T    C    2044.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517417    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2078,159,0
5    140751128    rs2240697    C    G    1525.26    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.496;DB;DP=90;Dels=0.0;FS=2.893;HRun=0;HaplotypeScore=3.5944;MQ=59.02;MQ0=0;MQRankSum=-0.725;QD=16.95;ReadPosRankSum=3.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517417    GT:AD:DP:GQ:PL    0/1:40,49:90:99:1555,0,1305
5    140763029    rs2072315    A    G    425.09    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.041;DB;DP=37;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.807;QD=11.49;ReadPosRankSum=0.332;SNPEFF_AMINO_ACID_CHANGE=E188G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140762467_140764890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518325    GT:AD:DP:GQ:PL    0/1:18,19:37:99:455,0,601
5    140772427    rs726684    T    G    733.94    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=60;Dels=0.0;FS=3.84;HRun=1;HaplotypeScore=0.9734;MQ=59.69;MQ0=0;MQRankSum=-1.142;QD=12.23;ReadPosRankSum=-0.78;SNPEFF_AMINO_ACID_CHANGE=L16R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140772381_140774804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398604    GT:AD:DP:GQ:PL    0/1:32,28:60:99:764,0,843
5    140774288    rs4912749    T    C    1981.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=39.31;MQ0=5;QD=29.15;SNPEFF_AMINO_ACID_CHANGE=D636;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140772381_140774804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398604    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2015,168,0
5    140783596    rs1363448    C    T    1593.99    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=4.518;DB;DP=89;Dels=0.0;FS=3.919;HRun=0;HaplotypeScore=0.6651;MQ=58.74;MQ0=0;MQRankSum=-0.343;QD=17.91;ReadPosRankSum=0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517417    GT:AD:DP:GQ:PL    0/1:39,50:89:99:1624,0,1040
5    140793007    rs4912751    A    G    1859.40    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.746;DB;DP=151;Dels=0.0;FS=0.607;HRun=1;HaplotypeScore=1.9025;MQ=59.39;MQ0=0;MQRankSum=-0.357;QD=12.31;ReadPosRankSum=-0.931;SNPEFF_AMINO_ACID_CHANGE=I89V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140792743_140795178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398610    GT:AD:DP:GQ:PL    0/1:82,69:151:99:1889,0,2525
5    140795128    rs11575963    T    C    1058.25    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.423;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.96;QD=12.91;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=S796P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140792743_140795178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398610    GT:AD:DP:GQ:PL    0/1:45,37:82:99:1088,0,1484
5    140797630    rs2015825    G    T    932.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.329;DB;DP=117;Dels=0.0;FS=6.697;HRun=1;HaplotypeScore=3.6304;MQ=53.63;MQ0=0;MQRankSum=3.168;QD=7.97;ReadPosRankSum=-0.968;SNPEFF_AMINO_ACID_CHANGE=V68;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140797427_140799841;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGB7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398594    GT:AD:DP:GQ:PL    0/1:65,52:117:99:962,0,1300
5    140798639    rs17208397    G    C    1830.92    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.309;DB;DP=136;Dels=0.0;FS=0.647;HRun=0;HaplotypeScore=1.98;MQ=59.83;MQ0=0;MQRankSum=-1.075;QD=13.46;ReadPosRankSum=0.047;SNPEFF_AMINO_ACID_CHANGE=V405L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140797427_140799841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398594    GT:AD:DP:GQ:PL    0/1:71,65:136:99:1861,0,2200
5    140803419    .    G    A    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398610    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
5    140856265    rs2075661    G    C    170.58    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=22;Dels=0.0;FS=1.707;HRun=1;HaplotypeScore=0.8321;MQ=58.08;MQ0=0;MQRankSum=1.672;QD=7.75;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=A194;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140855580_140858113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308177    GT:AD:DP:GQ:PL    0/1:14,8:22:99:201,0,434
5    140857798    rs1423148    T    C    3191.51    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=250;DS;Dels=0.0;FS=8.202;HRun=0;HaplotypeScore=2.3999;MQ=58.72;MQ0=0;MQRankSum=-0.998;QD=12.77;ReadPosRankSum=1.755;SNPEFF_AMINO_ACID_CHANGE=F705;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140855580_140858113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308177    GT:AD:DP:GQ:PL    0/1:138,112:250:99:3222,0,4202
5    140869003    rs1002519    T    C    548.11    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.808;DB;DP=50;Dels=0.0;FS=1.219;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-1.764;QD=10.96;ReadPosRankSum=0.154;SNPEFF_AMINO_ACID_CHANGE=L66;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140868808_140871267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252087    GT:AD:DP:GQ:PL    0/1:29,21:50:99:578,0,768
5    140870516    rs2074912    A    G    304.87    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.054;DB;DP=37;Dels=0.0;FS=1.423;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.249;QD=8.24;ReadPosRankSum=1.184;SNPEFF_AMINO_ACID_CHANGE=D570G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140868808_140871267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252087    GT:AD:DP:GQ:PL    0/1:25,12:37:99:335,0,743
5    140870949    rs918558    G    T    1327.75    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.292;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.229;QD=15.44;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=A714;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_140868808_140871267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDHGC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252087    GT:AD:DP:GQ:PL    0/1:35,51:86:99:1358,0,1018
5    140898604    rs6878257    G    A    101.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.635;QD=8.48;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIAPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253811    GT:AD:DP:GQ:PL    0/1:7,5:12:99:132,0,218
5    140955777    rs2302103    C    T    1569.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIAPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472516    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1602,120,0
5    141014494    rs2530223    T    C    1911.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.02;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=Q55;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141014378_141014520;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305264    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1945,147,0
5    141016276    rs32954    T    C    4785.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=57.07;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435817    GT:AD:DP:GQ:PL    1/1:0,145:145:99:4786,370,0
5    141016288    rs1421896    T    G    4932.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.01;MQ0=0;QD=32.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435817    GT:AD:DP:GQ:PL    1/1:0,150:150:99:4932,367,0
5    141019110    rs14251    C    A    440.48    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.186;DB;DP=42;Dels=0.0;FS=1.309;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=10.49;ReadPosRankSum=1.556;SNPEFF_AMINO_ACID_CHANGE=L133I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141019031_141019216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RELL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297164    GT:AD:DP:GQ:PL    0/1:25,17:42:99:470,0,674
5    141019313    rs32955    C    T    139.05    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=15.45;ReadPosRankSum=1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518160    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,133
5    141019881    rs32956    G    C    241.62    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.99;DB;DP=30;Dels=0.0;FS=1.537;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.775;QD=8.05;ReadPosRankSum=1.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518160    GT:AD:DP:GQ:PL    0/1:19,11:30:99:272,0,633
5    141020100    rs41098    C    A    250.80    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=22.8;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518160    GT:AD:DP:GQ:PL    0/1:2,9:11:9.04:281,0,9
5    141021096    rs32957    G    A    181.77    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.69;MQ0=0;MQRankSum=-0.731;QD=18.18;ReadPosRankSum=0.895;SNPEFF_AMINO_ACID_CHANGE=P681L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141018869_141021130;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435817    GT:AD:DP:GQ:PL    0/1:3,7:10:79.18:212,0,79
5    141022544    rs702380    A    G    82.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.68;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518499    GT:AD:DP:GQ:PL    0/1:2,4:6:32.73:112,0,33
5    141024048    rs469522    A    G    562.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.256;DB;DP=48;Dels=0.0;FS=24.427;HRun=1;HaplotypeScore=0.734;MQ=58.54;MQ0=0;MQRankSum=0.397;QD=11.72;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518499    GT:AD:DP:GQ:PL    0/1:24,24:48:99:592,0,732
5    141024136    rs469074    T    G    1306.02    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.649;DB;DP=94;Dels=0.0;FS=2.92;HRun=0;HaplotypeScore=1.6609;MQ=58.51;MQ0=0;MQRankSum=2.612;QD=13.89;ReadPosRankSum=-0.108;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518499    GT:AD:DP:GQ:PL    0/1:41,53:94:99:1336,0,1266
5    141024890    rs112898157    T    TAGC    409.61    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=40.2934;IndelType=I;MQ=48.65;MQ0=0;MQRankSum=-1.788;QD=31.51;ReadPosRankSum=-1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519800    GT:AD:DP:GQ:PL    0/1:8,5:13:99:449,0,220
5    141025162    rs456998    G    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519800    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
5    141025581    rs2052455    A    G    58.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.73;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519800    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:89,0,30
5    141025929    rs7711960    A    G    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.14;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519800    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:67,0,72
5    141026094    rs11167754    G    A    257.47    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=23.41;ReadPosRankSum=1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519800    GT:AD:DP:GQ:PL    0/1:3,8:11:93.53:287,0,94
5    141026884    rs251177    T    C    191.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.7;ReadPosRankSum=0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519800    GT:AD:DP:GQ:PL    0/1:7,7:14:99:222,0,230
5    141027226    rs58908491    G    A    168.75    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=15.34;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519800    GT:AD:DP:GQ:PL    0/1:5,6:11:99:199,0,176
5    141027399    rs468968    T    C    182.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519800    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:215,18,0
5    141027462    rs3763121    G    A    330.07    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=28;Dels=0.0;FS=9.467;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.348;QD=11.79;ReadPosRankSum=1.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522690    GT:AD:DP:GQ:PL    0/1:16,12:28:99:360,0,497
5    141029177    rs3830219    CT    C    262.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.914;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=52.8727;IndelType=D;MQ=59.93;MQ0=0;MQRankSum=-1.107;QD=14.6;ReadPosRankSum=-0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    0/1:9,9:18:99:302,0,305
5    141034123    rs6580194    T    A    394.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:428,33,0
5    141034183    rs28655920    A    G    32.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.55;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    0/1:3,2:5:62.75:63,0,101
5    141035374    rs7715559    G    A    627.91    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.442;DB;DP=40;Dels=0.0;FS=5.87;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.614;QD=15.7;ReadPosRankSum=-0.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    0/1:17,23:40:99:658,0,477
5    141036337    rs7703648    A    G    478.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_AMINO_ACID_CHANGE=A1032;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141036285_141036413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508305    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:512,39,0
5    141039160    rs2306338    G    T    160.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=15;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=10.72;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    0/1:9,6:15:99:191,0,295
5    141041148    rs6891143    G    A    291.28    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=17.13;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    0/1:7,10:17:99:321,0,242
5    141041435    rs3749759    G    A    516.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:549,42,0
5    141044472    rs2306337    A    G    48.12    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.3;QD=6.01;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    0/1:5,3:8:78.11:78,0,144
5    141049407    rs3763120    G    A    1767.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504448    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1801,135,0
5    141051236    rs12514851    C    T    647.83    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=39;Dels=0.0;FS=1.317;HRun=1;HaplotypeScore=2.85;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=16.61;ReadPosRankSum=1.147;SNPEFF_AMINO_ACID_CHANGE=A247;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141051137_141051319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513878    GT:AD:DP:GQ:PL    0/1:17,22:39:99:678,0,452
5    141051925    rs3214933    CT    C    220.19    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=94.8884;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=0.424;QD=11.01;ReadPosRankSum=-0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524066    GT:AD:DP:GQ:PL    0/1:12,8:20:99:259,0,493
5    141052870    rs440279    G    C    564.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:598,48,0
5    141059649    rs417503    A    G    2718.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.22;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=P135;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141059530_141060070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2751,214,0
5    141059868    rs11167756    T    C    2573.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_AMINO_ACID_CHANGE=L62;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141059530_141060070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239440    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2607,190,0
5    141309824    rs351260    G    A    574.77    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=42;Dels=0.0;FS=2.749;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=13.69;ReadPosRankSum=2.053;SNPEFF_AMINO_ACID_CHANGE=A247T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141309743_141309839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000194118    GT:AD:DP:GQ:PL    0/1:22,20:42:99:605,0,590
5    141325249    rs105633    T    C    1682.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_AMINO_ACID_CHANGE=P1084;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141323150_141325370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231484    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1715,129,0
5    141335498    rs164515    C    T    393.93    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=37;Dels=0.0;FS=1.334;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.204;QD=10.65;ReadPosRankSum=-1.738;SNPEFF_AMINO_ACID_CHANGE=S640N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141334537_141338627;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231484    GT:AD:DP:GQ:PL    0/1:23,14:37:99:424,0,634
5    141354220    rs187542    G    C    223.44    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.66;MQ0=0;MQRankSum=0.296;QD=22.34;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506004    GT:AD:DP:GQ:PL    0/1:3,7:10:64.02:253,0,64
5    141357628    rs192243    G    A    38.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.71;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506004    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:68,0,29
5    141359525    rs365916    A    G    112.77    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.53;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502341    GT:AD:DP:GQ:PL    0/1:4,5:9:99:143,0,142
5    141364511    rs252099    A    G    1329.60    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.659;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7885;MQ=60.0;MQ0=0;MQRankSum=-0.385;QD=13.04;ReadPosRankSum=-1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512565    GT:AD:DP:GQ:PL    0/1:52,48:102:99:1360,0,1482
5    141364637    rs252100    C    T    164.11    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=10.26;ReadPosRankSum=-1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512565    GT:AD:DP:GQ:PL    0/1:9,7:16:99:194,0,320
5    141367202    rs374840    G    T    139.30    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.694;QD=10.72;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPDA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513454    GT:AD:DP:GQ:PL    0/1:4,9:13:99:169,0,129
5    141367203    rs424485    A    T    143.88    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.466;QD=11.07;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPDA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513454    GT:AD:DP:GQ:PL    0/1:4,9:13:99:174,0,129
5    141367235    rs75774668    G    A    406.38    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=3.73;DB;DP=21;Dels=0.0;FS=2.969;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.398;QD=19.35;ReadPosRankSum=0.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPDA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513454    GT:AD:DP:GQ:PL    0/1:8,13:21:99:436,0,225
5    141382472    rs252115    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPDA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503229    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
5    141382584    rs252114    T    C    226.68    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=18.89;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPDA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503229    GT:AD:DP:GQ:PL    0/1:5,7:12:99:257,0,169
5    141391532    rs164080    G    A    589.09    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.51;DB;DP=38;Dels=0.0;FS=5.153;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=15.5;ReadPosRankSum=0.046;SNPEFF_AMINO_ACID_CHANGE=R23;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_141391477_141391606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPDA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311337    GT:AD:DP:GQ:PL    0/1:15,23:38:99:619,0,391
5    141515564    rs7733850    C    T    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509436    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:73,0,30
5    141533062    rs449454    A    G    831.02    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=60;Dels=0.0;FS=2.783;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=13.85;ReadPosRankSum=-1.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313129    GT:AD:DP:GQ:PL    0/1:31,29:60:99:861,0,1034
5    141975067    rs34003    A    C    247.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.814;QD=8.26;ReadPosRankSum=-1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337706    GT:AD:DP:GQ:PL    0/1:20,10:30:99:278,0,697
5    142254679    rs185200    A    G    685.20    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.186;DB;DP=44;Dels=0.0;FS=6.905;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=15.57;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=R57;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_142254675_142254736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378013    GT:AD:DP:GQ:PL    0/1:20,22:44:99:715,0,648
5    142259083    rs27779    C    A    316.44    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9941;MQ=60.0;MQ0=0;MQRankSum=0.708;QD=13.76;ReadPosRankSum=-0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274498    GT:AD:DP:GQ:PL    0/1:11,12:23:99:346,0,379
5    142311509    rs712177    T    C    192.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.103;QD=12.05;ReadPosRankSum=-0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274498    GT:AD:DP:GQ:PL    0/1:8,8:16:99:223,0,237
5    142393562    rs3822397    G    A    99.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.1;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274498    GT:AD:DP:GQ:PL    0/1:5,4:9:99:130,0,152
5    142416741    rs192194    T    C    809.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274498    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:842,63,0
5    142421415    rs2270068    T    G    94.40    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=18.88;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=G415;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_142421381_142421455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274498    GT:AD:DP:GQ:PL    0/1:1,4:5:26.72:124,0,27
5    142513686    rs246607    A    G    733.87    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.51;DB;DP=60;Dels=0.0;FS=1.117;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.005;QD=12.23;ReadPosRankSum=1.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274498    GT:AD:DP:GQ:PL    0/1:35,25:60:99:764,0,1148
5    142593652    rs258819    C    T    419.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=24.65;SNPEFF_AMINO_ACID_CHANGE=N730;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_142593562_142593653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378004    GT:AD:DP:GQ:PL    1/1:0,17:17:33.11:452,33,0
5    142601811    rs147866000    TACACACACACAC    T    267.29    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=136.8371;IndelType=D;MQ=54.32;MQ0=0;MQRankSum=-0.143;QD=20.56;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274498    GT:AD:DP:GQ:PL    0/1:8,5:13:99:306,0,855
5    143131673    rs2636103    C    T    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTB-57H20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503323    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:68,0,69
5    143200053    rs161557    C    T    781.10    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.755;DB;DP=71;Dels=0.0;FS=1.004;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=-0.716;QD=11.0;ReadPosRankSum=-1.542;SNPEFF_AMINO_ACID_CHANGE=H16Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_143200045_143200284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289448    GT:AD:DP:GQ:PL    0/1:41,30:71:99:811,0,1277
5    143537904    rs4623178    G    A    34.86    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.071;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.323;QD=1.94;ReadPosRankSum=0.567;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377986    GT:AD:DP:GQ:PL    0/1:14,4:18:64.85:65,0,528
5    143541531    rs4361555    T    C    31.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508754    GT:AD:DP:GQ:PL    0/1:3,2:5:61.74:62,0,96
5    143541634    rs4329041    C    T    62.43    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=6.24;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508754    GT:AD:DP:GQ:PL    0/1:7,3:10:92.42:92,0,256
5    145144419    rs338887    G    T    151.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRELID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334744    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
5    145144459    .    G    T    74.26    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DP=11;Dels=0.0;FS=11.761;HRun=2;HaplotypeScore=0.0;MQ=36.64;MQ0=0;MQRankSum=-1.221;QD=6.75;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRELID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334744    GT:AD:DP:GQ:PL    0/1:4,7:11:56.62:104,0,57
5    145176221    rs338898    C    T    197.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRELID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334744    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
5    145197411    rs6870210    C    T    1217.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRELID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515475    GT:AD:DP:GQ:PL    1/1:0,39:39:96.28:1250,96,0
5    145198805    rs624380    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRELID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515475    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:84,6,0
5    145199430    rs11293460    AG    A    1538.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=1;HaplotypeScore=101.0251;IndelType=D;MQ=60.85;MQ0=0;QD=40.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRELID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334744    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1580,114,0
5    145199681    rs139755910    TTTTTG    T    654.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=130.8064;IndelType=D;MQ=51.1;MQ0=0;QD=38.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRELID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334744    GT:AD:DP:GQ:PL    1/1:4,13:17:42.11:696,42,0
5    145202461    rs6898776    C    T    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRELID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334744    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
5    145239119    rs432793    G    C    133.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRXCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377976    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
5    145246085    rs2569006    T    G    1018.65    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=5.889;DB;DP=74;Dels=0.0;FS=1.069;HRun=4;HaplotypeScore=0.9665;MQ=59.69;MQ0=0;MQRankSum=0.625;QD=13.77;ReadPosRankSum=1.233;SNPEFF_AMINO_ACID_CHANGE=L181F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145246064_145246291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRXCR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377976    GT:AD:DP:GQ:PL    0/1:40,34:74:99:1049,0,1075
5    145252574    rs10037373    C    T    196.73    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.205;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=8.94;ReadPosRankSum=-1.135;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRXCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377976    GT:AD:DP:GQ:PL    0/1:13,9:22:99:227,0,410
5    145393364    rs758037    C    T    914.89    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=3.572;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8907;MQ=59.61;MQ0=0;MQRankSum=0.567;QD=15.51;ReadPosRankSum=1.143;SNPEFF_AMINO_ACID_CHANGE=R267C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145393310_145393624;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3RF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359120    GT:AD:DP:GQ:PL    0/1:27,31:59:99:945,0,777
5    145427105    rs17796792    G    T    87.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3RF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359120    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
5    145439647    rs2962525    T    C    1838.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=31.15;SNPEFF_AMINO_ACID_CHANGE=W592R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145439429_145439787;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3RF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359120    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1871,150,0
5    145442203    rs1056149    G    C    622.82    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.052;DB;DP=50;Dels=0.0;FS=1.097;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=12.46;ReadPosRankSum=-0.15;SNPEFF_AMINO_ACID_CHANGE=G109A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145441989_145442297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3RF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000513503    GT:AD:DP:GQ:PL    0/1:26,24:50:99:653,0,813
5    145477855    rs6877277    T    C    490.43    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=0.748;DB;DP=49;Dels=0.0;FS=7.956;HRun=2;HaplotypeScore=3.2648;MQ=59.53;MQ0=0;MQRankSum=-0.639;QD=10.01;ReadPosRankSum=1.81;SNPEFF_AMINO_ACID_CHANGE=R40;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145477719_145477855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC8L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311450    GT:AD:DP:GQ:PL    0/1:29,20:49:99:520,0,946
5    145478009    rs6892928    C    T    36.43    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=9.11;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311450    GT:AD:DP:GQ:PL    0/1:1,3:4:26.22:66,0,26
5    145483679    rs12188066    T    C    68.20    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=5.68;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311450    GT:AD:DP:GQ:PL    0/1:8,4:12:98.19:98,0,256
5    145483713    rs12187128    C    T    245.98    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=19;Dels=0.0;FS=4.713;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=12.95;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311450    GT:AD:DP:GQ:PL    0/1:11,8:19:99:276,0,363
5    145483844    rs12187913    A    T    582.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.117;QD=13.86;ReadPosRankSum=-1.708;SNPEFF_AMINO_ACID_CHANGE=C11S;SNPEFF_CODON_CHANGE=Tgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145483756_145483932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC8L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311450    GT:AD:DP:GQ:PL    0/1:21,21:42:99:612,0,643
5    145499996    rs10988    C    T    1113.46    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.722;DB;DP=88;Dels=0.0;FS=13.572;HRun=1;HaplotypeScore=1.9914;MQ=60.0;MQ0=0;MQRankSum=-0.247;QD=12.65;ReadPosRankSum=-0.13;SNPEFF_AMINO_ACID_CHANGE=R1034K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145499934_145500066;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000510191    GT:AD:DP:GQ:PL    0/1:48,40:88:99:1143,0,1449
5    145508340    rs2895647    A    G    765.50    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.727;DB;DP=51;Dels=0.0;FS=3.103;HRun=1;HaplotypeScore=0.8667;MQ=59.55;MQ0=0;MQRankSum=-0.183;QD=15.01;ReadPosRankSum=-1.823;SNPEFF_AMINO_ACID_CHANGE=T234;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145508235_145508345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540713    GT:AD:DP:GQ:PL    0/1:20,31:51:99:795,0,656
5    145508457    rs2895648    T    C    360    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=34;Dels=0.0;FS=6.139;HRun=0;HaplotypeScore=0.0;MQ=56.52;MQ0=0;MQRankSum=-0.413;QD=10.59;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504611    GT:AD:DP:GQ:PL    0/1:17,17:34:99:390,0,584
5    145508471    rs2895649    T    C    468.07    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.558;DB;DP=34;Dels=0.0;FS=3.732;HRun=0;HaplotypeScore=0.0;MQ=56.52;MQ0=0;MQRankSum=-0.486;QD=13.77;ReadPosRankSum=0.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504611    GT:AD:DP:GQ:PL    0/1:18,16:34:99:498,0,603
5    145508636    rs61732383    T    C    850.48    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=2.918;DB;DP=94;Dels=0.0;FS=9.607;HRun=0;HaplotypeScore=12.4314;MQ=54.27;MQ0=0;MQRankSum=-1.043;QD=9.05;ReadPosRankSum=-0.215;SNPEFF_AMINO_ACID_CHANGE=N201D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145508541_145508681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540713    GT:AD:DP:GQ:PL    0/1:49,44:94:99:880,0,951
5    145508637    rs61732382    A    C    769.70    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.31;DB;DP=94;Dels=0.0;FS=0.874;HRun=0;HaplotypeScore=12.4314;MQ=54.27;MQ0=0;MQRankSum=-2.01;QD=8.19;ReadPosRankSum=-0.546;SNPEFF_AMINO_ACID_CHANGE=V200;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145508541_145508681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540713    GT:AD:DP:GQ:PL    0/1:50,44:94:99:800,0,1207
5    145508688    rs142298525    AAAAAAG    A    1577.22    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=4.281;DB;DP=74;FS=6.973;HRun=0;HaplotypeScore=583.6074;IndelType=D;MQ=50.43;MQ0=0;MQRankSum=-5.907;QD=21.31;ReadPosRankSum=-1.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512412    GT:AD:DP:GQ:PL    0/1:43,31:74:99:1616,0,3281
5    145509573    rs11953517    G    A    484.21    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=11.81;ReadPosRankSum=0.541;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512412    GT:AD:DP:GQ:PL    0/1:21,20:41:99:514,0,616
5    145512367    rs112174743    TA    T    226.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.452;DB;DP=22;FS=8.751;HRun=12;HaplotypeScore=152.5159;IndelType=D;MQ=55.6;MQ0=0;MQRankSum=0.817;QD=10.28;ReadPosRankSum=1.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512412    GT:AD:DP:GQ:PL    1/1:9,13:22:10.05:267,10,0
5    145512379    rs66471844    AG    A    173.20    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=158.2988;IndelType=D;MQ=55.8;MQ0=0;MQRankSum=-1.615;QD=7.53;ReadPosRankSum=-1.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512412    GT:AD:DP:GQ:PL    0/1:18,5:23:55.87:212,0,56
5    145512390    rs35869904    G    C    137.50    HaplotypeScoreFilter13    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.176;DB;DP=29;Dels=0.03;FS=3.01;HRun=0;HaplotypeScore=14.5672;MQ=56.42;MQ0=0;MQRankSum=-1.933;QD=4.58;ReadPosRankSum=-1.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512412    GT:AD:DP:GQ:PL    0/1:17,10:29:99:167,0,494
5    145512807    rs3797628    T    C    139.61    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.51;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274562    GT:AD:DP:GQ:PL    0/1:4,5:9:99:170,0,126
5    145515346    rs12153109    C    T    151.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=16.84;ReadPosRankSum=1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274562    GT:AD:DP:GQ:PL    0/1:4,5:9:99:182,0,110
5    145519603    rs67598659    C    T    113.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.88;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504323    GT:AD:DP:GQ:PL    0/1:2,4:6:64.82:143,0,65
5    145519821    rs17493851    G    A    545    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=37;Dels=0.0;FS=1.608;HRun=0;HaplotypeScore=5.6938;MQ=59.38;MQ0=0;MQRankSum=0.459;QD=14.73;ReadPosRankSum=-0.522;SNPEFF_AMINO_ACID_CHANGE=D644;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145519767_145519824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510191    GT:AD:DP:GQ:PL    0/1:18,18:37:99:575,0,518
5    145519948    rs11951553    C    T    130.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=16.37;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504323    GT:AD:DP:GQ:PL    0/1:2,6:8:58.74:161,0,59
5    145522912    rs2962504    A    G    3134.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507095    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3167,262,0
5    145523105    rs11540217    G    A    1995.56    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=0.845;DB;DP=117;Dels=0.0;FS=2.381;HRun=1;HaplotypeScore=5.0705;MQ=59.41;MQ0=0;MQRankSum=0.282;QD=17.06;ReadPosRankSum=-0.706;SNPEFF_AMINO_ACID_CHANGE=L529;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145522975_145523113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510191    GT:AD:DP:GQ:PL    0/1:49,66:117:99:2026,0,1626
5    145524401    rs13161075    G    C    76.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.38;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274562    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:107,0,68
5    145532859    rs17500483    T    C    285.46    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=22;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=0.033;QD=12.98;ReadPosRankSum=0.758;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511505    GT:AD:DP:GQ:PL    0/1:12,10:22:99:315,0,384
5    145532876    rs17500504    A    G    261.83    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.327;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.449;QD=13.78;ReadPosRankSum=-0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511505    GT:AD:DP:GQ:PL    0/1:10,9:19:99:292,0,339
5    145532927    rs17428465    T    C    63.90    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.895;QD=6.39;ReadPosRankSum=1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511505    GT:AD:DP:GQ:PL    0/1:7,3:10:93.89:94,0,213
5    145533128    rs34090359    T    C    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511505    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
5    145533418    rs34342344    T    A    668.50    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.899;DB;DP=39;Dels=0.0;FS=2.869;HRun=0;HaplotypeScore=0.9469;MQ=59.41;MQ0=0;MQRankSum=-0.014;QD=17.14;ReadPosRankSum=-1.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511505    GT:AD:DP:GQ:PL    0/1:16,23:39:99:698,0,487
5    145537535    rs2962507    C    T    90.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274562    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
5    145538924    rs13178516    T    A    346.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.101;DB;DP=23;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.985;QD=15.05;ReadPosRankSum=1.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274562    GT:AD:DP:GQ:PL    0/1:11,11:23:99:376,0,325
5    145539123    rs13182567    T    A    181.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.555;QD=13.99;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360930    GT:AD:DP:GQ:PL    0/1:7,6:13:99:212,0,241
5    145539996    rs11540214    T    G    231.07    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.647;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.539;QD=8.89;ReadPosRankSum=-0.323;SNPEFF_AMINO_ACID_CHANGE=S162;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145539937_145540049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510191    GT:AD:DP:GQ:PL    0/1:17,9:26:99:261,0,528
5    145543972    rs3763373    G    A    2530.15    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.592;DB;DP=191;Dels=0.0;FS=1.772;HRun=0;HaplotypeScore=3.4294;MQ=59.64;MQ0=0;MQRankSum=0.542;QD=13.25;ReadPosRankSum=-0.504;SNPEFF_AMINO_ACID_CHANGE=G111;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145543873_145544034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000510191    GT:AD:DP:GQ:PL    0/1:95,96:191:99:2560,0,2846
5    145562143    rs11540215    G    A    403.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.804;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=-0.391;QD=14.42;ReadPosRankSum=-0.069;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505223    GT:AD:DP:GQ:PL    0/1:14,14:28:99:434,0,435
5    145562282    rs13186701    G    T    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274562    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
5    145634304    rs7703269    C    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265271    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    145643048    rs7729098    G    A    929.64    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.038;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.038;QD=16.6;ReadPosRankSum=0.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265271    GT:AD:DP:GQ:PL    0/1:25,31:56:99:960,0,748
5    145647151    rs2963925    C    T    698.42    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.775;DB;DP=41;Dels=0.0;FS=2.944;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.449;QD=17.03;ReadPosRankSum=-0.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508019    GT:AD:DP:GQ:PL    0/1:16,25:41:99:728,0,561
5    145651122    .    G    A    588.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.7;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.277;QD=16.82;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=R958H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145651046_145651237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265271    GT:AD:DP:GQ:PL    0/1:15,20:35:99:619,0,404
5    145836662    rs2304055    A    T    498.51    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.971;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.5;MQ0=0;MQRankSum=-0.472;QD=13.47;ReadPosRankSum=0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296702    GT:AD:DP:GQ:PL    0/1:20,17:37:99:529,0,706
5    145838440    rs11743333    G    A    969.42    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=71;Dels=0.0;FS=3.821;HRun=0;HaplotypeScore=1.9048;MQ=60.0;MQ0=0;MQRankSum=0.062;QD=13.65;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296702    GT:AD:DP:GQ:PL    0/1:39,32:71:99:999,0,914
5    145849426    rs10068201    A    G    180.32    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.656;QD=13.87;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513298    GT:AD:DP:GQ:PL    0/1:7,6:13:99:210,0,253
5    145850069    rs148999181    A    ATAT    230.46    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=19.9571;IndelType=I;MQ=63.02;MQ0=0;MQRankSum=0.922;QD=32.92;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513298    GT:AD:DP:GQ:PL    0/1:2,4:7:78.92:269,0,79
5    145850328    rs12657671    T    C    200.10    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.189;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=7.7;ReadPosRankSum=0.553;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510724    GT:AD:DP:GQ:PL    0/1:16,10:26:99:230,0,504
5    145851163    rs11391120    AT    A    139.71    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=40;FS=0.0;HRun=16;HaplotypeScore=247.7352;IndelType=D;MQ=55.83;MQ0=0;MQRankSum=1.194;QD=3.49;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510724    GT:AD:DP:GQ:PL    0/1:21,17:40:99:179,0,128
5    145859763    rs2288812    G    A    70.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.8;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296702    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,110
5    145861909    rs12658559    C    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507175    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
5    145861940    rs12652790    T    A    130.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=26.17;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507175    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:163,12,0
5    145862463    rs3756502    A    G    30.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507175    GT:AD:DP:GQ:PL    0/1:1,2:3:33.21:61,0,33
5    145890028    rs4705103    A    G    1329.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.51;MQ0=0;QD=28.29;SNPEFF_AMINO_ACID_CHANGE=S1019;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145890004_145890586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394421    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1363,108,0
5    145894896    rs7709485    G    C    879.82    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.339;DB;DP=43;Dels=0.0;FS=1.222;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.013;QD=20.46;ReadPosRankSum=0.641;SNPEFF_AMINO_ACID_CHANGE=L261V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_145892666_145895753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR151;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311104    GT:AD:DP:GQ:PL    0/1:16,27:43:99:910,0,427
5    145979623    rs322468    G    A    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011357.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336640    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
5    146030055    rs6866598    C    T    39.13    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.185;QD=3.26;ReadPosRankSum=-0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011357.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522831    GT:AD:DP:GQ:PL    0/1:9,3:12:69.13:69,0,330
5    146435163    rs11958187    G    A    579.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011357.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336640    GT:AD:DP:GQ:PL    1/1:0,18:18:45.13:612,45,0
5    146619206    rs4705132    G    C    365.76    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.407;DB;DP=46;Dels=0.0;FS=1.174;HRun=1;HaplotypeScore=1.4942;MQ=59.59;MQ0=0;MQRankSum=-0.416;QD=7.95;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=A3;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_146619102_146619249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK32A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397936    GT:AD:DP:GQ:PL    0/1:28,18:46:99:396,0,764
5    146657469    rs6894633    G    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK32A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397936    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
5    146657584    rs6580458    T    C    1116.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=39.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK32A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397936    GT:AD:DP:GQ:PL    1/1:0,28:28:84.27:1150,84,0
5    146657838    rs6580459    G    A    1953.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=39.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK32A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397936    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1986,150,0
5    146728149    rs10072514    C    G    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK32A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397936    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    146971253    rs7449194    C    T    1444.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9001;MQ=59.09;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265272    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1477,108,0
5    146981164    rs71748216    TCAAAACAAAACAAAA    T    1261.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=218.0396;IndelType=D;MQ=50.63;MQ0=0;QD=84.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265272    GT:AD:DP:GQ:PL    1/1:2,13:15:39.13:1304,39,0
5    146991452    rs10039022    T    C    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539401    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
5    147019416    .    G    C    582.39    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.3;MQ0=0;MQRankSum=-1.03;QD=17.65;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265272    GT:AD:DP:GQ:PL    0/1:15,18:33:99:612,0,479
5    147261812    rs3843496    T    C    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296694    GT:AD:DP:GQ:PL    1/1:0,2:2:6:66,6,0
5    147286054    rs2250145    G    A    701.35    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.057;DB;DP=46;Dels=0.0;FS=6.711;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.971;QD=15.25;ReadPosRankSum=0.857;SNPEFF_AMINO_ACID_CHANGE=S4L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147285995_147286065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C5orf46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318315    GT:AD:DP:GQ:PL    0/1:20,26:46:99:731,0,628
5    147444785    rs2287772    A    G    262.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:296,24,0
5    147444989    rs9325061    G    A    863.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:896,69,0
5    147445023    rs1609851    C    G    543.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:576,42,0
5    147449855    rs1423001    A    G    1592.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1625,123,0
5    147450085    rs3752676    C    A    1250.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1283,96,0
5    147450247    rs10073775    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    147451451    rs7445392    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    147468234    rs7711953    C    G    677.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,19:19:54.14:711,54,0
5    147468971    rs4529181    G    C    888.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:922,69,0
5    147475386    rs6892205    A    G    874.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_AMINO_ACID_CHANGE=Q248R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147475381_147475468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:908,72,0
5    147475488    rs11958432    A    G    1033.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.43;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1067,78,0
5    147475513    rs76839946    G    GT    1031.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=1;HaplotypeScore=143.0138;IndelType=I;MQ=62.55;MQ0=0;QD=41.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1074,75,0
5    147475590    rs11948406    G    A    126.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
5    147475609    rs62388363    A    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
5    147475627    rs62388364    G    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
5    147477260    rs11168019    A    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=63.51;MQ0=0;QD=15.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
5    147477351    rs140098537    T    TTTTAA    1719.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=81.4576;IndelType=I;MQ=45.67;MQ0=0;QD=81.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:5,16:21:60.21:1762,60,0
5    147477551    rs34482796    C    T    751.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.52;MQ0=0;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=A316V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147477430_147477557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:785,60,0
5    147478785    rs1422991    C    T    1058.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,33:33:81.26:1092,81,0
5    147478981    rs11168021    C    A    382.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:415,30,0
5    147479037    rs11168022    A    G    191.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=31.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:224,18,0
5    147479050    rs35661442    A    G    147.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
5    147479116    rs13172395    T    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
5    147479991    rs2303061    C    T    1635.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1668,129,0
5    147480007    rs2303062    A    G    2002.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.19;MQ0=0;QD=35.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476697    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2035,150,0
5    147480027    rs2303063    G    A    2229.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.98;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=S349N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147480017_147480144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2262,169,0
5    147480112    rs2303065    T    C    1952.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=30.99;SNPEFF_AMINO_ACID_CHANGE=H377;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147480017_147480144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1985,162,0
5    147480868    rs2303066    G    A    1194.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481286    GT:AD:DP:GQ:PL    1/1:0,33:33:90.30:1227,90,0
5    147480955    rs2303067    A    G    1742.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=K401E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147480918_147480999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1775,135,0
5    147481018    rs2303068    G    A    1237.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.466;DB;DP=39;Dels=0.0;FS=8.016;HRun=1;HaplotypeScore=0.8941;MQ=59.41;MQ0=0;MQRankSum=-0.311;QD=31.72;ReadPosRankSum=-0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476608    GT:AD:DP:GQ:PL    1/1:1,38:39:63.07:1270,63,0
5    147481430    rs6896303    A    G    2079.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=28.88;SNPEFF_AMINO_ACID_CHANGE=G444;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147481344_147481471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2112,181,0
5    147484465    rs113265884    GA    G    622.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=11;HaplotypeScore=76.6902;IndelType=D;MQ=59.5;MQ0=0;QD=23.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476608    GT:AD:DP:GQ:PL    1/1:0,27:27:80.90:664,81,0
5    147486677    rs880687    C    A    2874.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.99;MQ0=0;QD=34.63;SNPEFF_AMINO_ACID_CHANGE=G500;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147486600_147486727;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2907,217,0
5    147486818    rs3036740    CGT    C    1360.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=116.7891;IndelType=D;MQ=58.82;MQ0=1;QD=41.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:2,31:32:93.31:1402,93,0
5    147488367    rs2303071    C    T    3441.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=V534;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147488316_147488400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3442,253,0
5    147491532    rs2287768    T    C    833.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,26:26:63.21:866,63,0
5    147493780    rs3815737    T    G    98.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=24.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:131,12,0
5    147493791    rs3815736    C    T    142.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
5    147493803    rs35860121    G    GA    338.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=8;HaplotypeScore=188.1373;IndelType=I;MQ=39.02;MQ0=0;QD=28.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:3,9:12:33.10:381,33,0
5    147493831    .    C    CT    336.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.349;DP=20;FS=0.0;HRun=1;HaplotypeScore=302.1128;IndelType=I;MQ=43.21;MQ0=0;MQRankSum=0.578;QD=16.84;ReadPosRankSum=0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:8,12:20:44.25:379,44,0
5    147493833    rs35043219    C    T    68.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=12;HaplotypeScore=12.9466;MQ=43.21;MQ0=0;QD=3.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,20:20:9.02:100,9,0
5    147493871    rs3815735    G    A    537.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=50.84;MQ0=0;QD=20.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,25:26:48.10:571,48,0
5    147497730    rs3777137    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.1;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    147497773    rs3777136    T    G    79.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
5    147497871    rs6891892    T    C    667.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:700,54,0
5    147497932    rs3777135    T    C    1600.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1633,120,0
5    147498019    rs3777134    G    A    2080.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.65;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=R692Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147498000_147498127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:1,63:65:99:2114,156,0
5    147498292    rs3764928    A    G    169.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
5    147498389    rs3764927    G    C    136.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
5    147498523    rs3764926    T    C    945.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:978,75,0
5    147498652    rs9325073    C    G    807.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507988    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:840,63,0
5    147498669    rs9325074    G    A    643.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507988    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:677,51,0
5    147498672    rs12518996    G    A    663.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=34.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507988    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:696,51,0
5    147498763    rs9325075    C    A    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507988    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    147499616    rs17704908    C    T    640.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_AMINO_ACID_CHANGE=L767;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147499572_147499699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:674,51,0
5    147499670    rs33920397    C    T    594.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=G785;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147499572_147499699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:627,48,0
5    147504305    rs3036731    C    CT    451.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=9;HaplotypeScore=125.9962;IndelType=I;MQ=61.19;MQ0=0;QD=25.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508733    GT:AD:DP:GQ:PL    1/1:3,15:18:45.59:494,46,0
5    147505116    rs3764930    G    A    2905.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_AMINO_ACID_CHANGE=A923;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147505087_147505176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359874    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2938,217,0
5    147505227    rs2112767    G    A    3688.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DB;DP=110;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9867;MQ=60.1;MQ0=0;MQRankSum=-1.224;QD=33.23;ReadPosRankSum=-0.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398454    GT:AD:DP:GQ:PL    1/1:1,109:110:99:3688,257,0
5    147510776    rs6895434    T    C    2917.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2951,226,0
5    147510866    rs2400478    T    C    4629.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=G1003;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147510822_147510952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256084    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4630,340,0
5    147549163    rs4269285    T    C    131.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356972    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
5    147554889    rs10052031    A    C    234.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356972    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:267,24,0
5    147554997    rs111415515    TTTTTTCC    T    780.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=121.5639;IndelType=D;MQ=29.89;MQ0=0;QD=60.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356972    GT:AD:DP:GQ:PL    1/1:2,11:13:33.10:823,33,0
5    147555029    rs10074328    C    T    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=12.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356972    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:134,12,0
5    147593231    rs10038416    A    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325630    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    147593497    rs12186491    C    A    3171.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7853;MQ=59.81;MQ0=0;QD=32.36;SNPEFF_AMINO_ACID_CHANGE=P36T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147593473_147593588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325630    GT:AD:DP:GQ:PL    1/1:0,97:98:99:3204,244,0
5    147693423    rs1862431    C    T    162.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPINK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274565    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
5    147693826    rs3749690    G    A    487.62    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=35;Dels=0.0;FS=6.131;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.05;QD=13.93;ReadPosRankSum=1.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPINK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514394    GT:AD:DP:GQ:PL    0/1:20,15:35:99:518,0,622
5    147695283    rs3217238    C    CTCA    476.07    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.62;DB;DP=21;FS=3.274;HRun=0;HaplotypeScore=65.1808;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.088;QD=22.67;ReadPosRankSum=1.943;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPINK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504037    GT:AD:DP:GQ:PL    0/1:12,9:21:99:515,0,345
5    147715820    rs6894032    G    T    173.25    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=15.75;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377906    GT:AD:DP:GQ:PL    0/1:5,6:11:99:203,0,101
5    147774662    rs10072051    T    G    42.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.57;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504971    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:72,0,32
5    147781732    rs34685718    T    G    869.10    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.159;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.74;MQ0=0;MQRankSum=-0.113;QD=12.07;ReadPosRankSum=0.904;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503613    GT:AD:DP:GQ:PL    0/1:39,33:72:99:899,0,1359
5    147788798    rs10077690    A    G    1052.04    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.474;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.73;MQ0=0;MQRankSum=1.207;QD=12.52;ReadPosRankSum=0.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509699    GT:AD:DP:GQ:PL    0/1:50,34:84:99:1082,0,1557
5    147793971    rs12717973    G    A    147.04    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.34;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502571    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,138
5    147803557    rs11168047    G    T    386.49    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=14.31;ReadPosRankSum=-0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296701    GT:AD:DP:GQ:PL    0/1:13,14:27:99:416,0,434
5    147805120    rs10043775    T    C    308.20    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.952;DB;DP=27;Dels=0.0;FS=3.312;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=11.41;ReadPosRankSum=0.129;SNPEFF_AMINO_ACID_CHANGE=S592P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_147805085_147805264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296701    GT:AD:DP:GQ:PL    0/1:14,12:27:99:338,0,438
5    147812901    rs6861078    T    G    380.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.391;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=58.41;MQ0=0;MQRankSum=-1.229;QD=9.52;ReadPosRankSum=-0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296701    GT:AD:DP:GQ:PL    0/1:25,15:40:99:411,0,883
5    147819366    rs10051223    T    C    790.34    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=67;Dels=0.0;FS=5.466;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.706;QD=11.8;ReadPosRankSum=1.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504447    GT:AD:DP:GQ:PL    0/1:39,28:67:99:820,0,1252
5    147820207    rs3734121    G    A    154.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=17.11;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296701    GT:AD:DP:GQ:PL    0/1:3,6:9:99:184,0,104
5    147821469    rs3734120    C    T    297.71    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.436;DB;DP=19;Dels=0.0;FS=3.139;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=15.67;ReadPosRankSum=-0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505399    GT:AD:DP:GQ:PL    0/1:8,11:19:99:328,0,288
5    147856232    rs6580550    T    C    582.14    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=3.358;DB;DP=41;Dels=0.0;FS=2.183;HRun=0;HaplotypeScore=0.9332;MQ=58.33;MQ0=0;MQRankSum=0.054;QD=13.86;ReadPosRankSum=0.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360693    GT:AD:DP:GQ:PL    0/1:19,22:41:99:612,0,628
5    147856257    rs11411672    G    GA    755.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.603;DB;DP=58;FS=1.172;HRun=9;HaplotypeScore=230.5329;IndelType=I;MQ=59.58;MQ0=0;MQRankSum=1.919;QD=13.03;ReadPosRankSum=-1.192;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360693    GT:AD:DP:GQ:PL    0/1:29,29:58:99:795,0,487
5    147856333    rs7733088    G    A    908.33    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=53;Dels=0.0;FS=1.335;HRun=0;HaplotypeScore=0.9578;MQ=59.54;MQ0=0;MQRankSum=-0.938;QD=17.14;ReadPosRankSum=-0.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360693    GT:AD:DP:GQ:PL    0/1:24,29:53:99:938,0,712
5    147856392    rs7715901    A    G    219.52    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.208;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.104;QD=8.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360693    GT:AD:DP:GQ:PL    0/1:15,11:26:99:250,0,503
5    147902703    rs7725785    C    A    615.91    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.338;DB;DP=37;Dels=0.0;FS=1.982;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=16.65;ReadPosRankSum=-2.338;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314512    GT:AD:DP:GQ:PL    0/1:14,23:37:99:646,0,415
5    147928225    rs2278392    C    T    226.73    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=15.12;ReadPosRankSum=-0.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519495    GT:AD:DP:GQ:PL    0/1:7,8:15:99:257,0,202
5    148016636    .    G    A    209.92    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.272;QD=11.66;ReadPosRankSum=-1.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314512    GT:AD:DP:GQ:PL    0/1:7,11:18:99:240,0,200
5    148206348    rs1042711    C    T    518.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.56;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_148206156_148208196;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305988    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:551,42,0
5    148206375    rs1801704    C    T    777.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=37.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_5_148206156_148208196;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305988    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:810,63,0
5    148206440    rs1042713    G    A    1085.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_AMINO_ACID_CHANGE=G16R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_148206156_148208196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305988    GT:AD:DP:GQ:PL    1/1:0,35:35:84.27:1118,84,0
5    148206473    rs1042714    G    C    1399.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=E27Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_148206156_148208196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305988    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1432,105,0
5    148207659    rs71739194    A    AC    161.08    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=36;FS=0.0;HRun=11;HaplotypeScore=206.2667;IndelType=I;MQ=53.67;MQ0=1;MQRankSum=-0.212;QD=4.35;ReadPosRankSum=-1.061;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305988    GT:AD:DP:GQ:PL    0/1:22,14:36:53.13:200,0,53
5    148407708    rs1432794    A    C    3902.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=R414;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_148406127_148408117;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3TC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394358    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3902,292,0
5    148411369    rs11168081    C    T    328.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3TC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394358    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:362,27,0
5    148418137    rs187403313    G    A    318.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=58.33;MQ0=0;MQRankSum=-0.209;QD=11.39;ReadPosRankSum=-0.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3TC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511949    GT:AD:DP:GQ:PL    0/1:16,12:28:99:349,0,573
5    148521799    rs11744532    T    C    641.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    1/1:0,25:25:57.17:675,57,0
5    148577495    rs4263488    G    A    145.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:178,15,0
5    148580025    rs6580602    G    A    699.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:732,54,0
5    148586451    rs5872113    A    AG    248.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=13.4701;IndelType=I;MQ=63.02;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
5    148610276    rs2918265    C    A    485.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.639;DB;DP=42;Dels=0.0;FS=2.999;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.36;QD=11.57;ReadPosRankSum=-0.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:24,18:42:99:516,0,745
5    148612619    rs998583    G    T    114.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=14.26;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:4,4:8:99:144,0,117
5    148618708    rs58203769    A    G    265.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=60.0;MQ0=0;MQRankSum=-1.429;QD=13.25;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:10,10:20:99:295,0,363
5    148618749    rs59032271    C    T    659.19    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.291;DB;DP=38;Dels=0.0;FS=9.074;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.251;QD=17.35;ReadPosRankSum=0.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:16,22:38:99:689,0,558
5    148618752    rs59757169    G    A    684.03    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=4.971;DB;DP=39;Dels=0.0;FS=9.286;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.722;QD=17.54;ReadPosRankSum=0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:17,22:39:99:714,0,494
5    148618964    rs34180939    G    A    134.34    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=3.522;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=14.93;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:4,5:9:99:164,0,137
5    148619189    rs66790461    AG    A    594.28    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=3.689;DB;DP=39;FS=5.405;HRun=6;HaplotypeScore=107.1124;IndelType=D;MQ=59.37;MQ0=0;MQRankSum=1.383;QD=15.24;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:16,23:39:99:633,0,404
5    148620224    rs3797315    T    G    457.55    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9995;MQ=58.55;MQ0=0;MQRankSum=0.17;QD=10.89;ReadPosRankSum=-0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519549    GT:AD:DP:GQ:PL    0/1:22,20:42:99:488,0,633
5    148621805    rs2289283    T    C    36.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519549    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:66,0,32
5    148625972    rs66995464    TA    T    38.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=49.6695;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=3.81;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514212    GT:AD:DP:GQ:PL    0/1:5,5:10:77.16:77,0,139
5    148627054    rs10035236    G    A    80.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.07;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514212    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:110,0,27
5    148627252    rs9325136    G    A    416.75    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.543;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.031;QD=18.12;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:9,14:23:99:447,0,289
5    148627503    rs2304609    C    T    260.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.167;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.131;QD=11.85;ReadPosRankSum=-1.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:11,11:22:99:291,0,322
5    148637733    rs35345919    C    G    58.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=8.36;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309868    GT:AD:DP:GQ:PL    0/1:3,3:7:88.52:89,0,104
5    148639062    rs1438688    C    T    164.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=11.78;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502855    GT:AD:DP:GQ:PL    0/1:7,7:14:99:195,0,202
5    148678994    rs7715371    G    T    153.34    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=21.91;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296721    GT:AD:DP:GQ:PL    0/1:2,5:7:60.81:183,0,61
5    148679301    rs171286    C    G    115.24    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=8.23;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296721    GT:AD:DP:GQ:PL    0/1:9,5:14:99:145,0,277
5    148680020    rs77005424    A    T    111.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.92;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296721    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,104
5    148712066    rs56036758    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AFAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296721    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    148747393    rs353256    T    A    80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518814    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
5    148989122    rs2400891    C    T    1171.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.67;SNPEFF_AMINO_ACID_CHANGE=L108;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_148989111_148989258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1205,93,0
5    148989312    rs7443869    A    G    557.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:590,45,0
5    148989320    rs7447560    T    C    433.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=25.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,17:17:39.10:467,39,0
5    148989410    rs7707438    A    G    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
5    148997686    rs6579750    A    G    2597.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.78;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2631,217,0
5    149006426    rs10039565    A    G    68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=22.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
5    149006518    rs147615867    TCAGTGG    T    525.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=92.8596;IndelType=D;MQ=33.42;MQ0=0;QD=52.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:1,9:10:24.08:568,24,0
5    149006640    rs9324624    C    T    2186.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.64;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=P489L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149006639_149006834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2219,166,0
5    149006837    rs7732873    A    G    1487.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1520,114,0
5    149006879    rs7733002    A    G    843.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,23:23:69.19:876,69,0
5    149008403    rs1056993    A    G    512.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_AMINO_ACID_CHANGE=L564;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149008372_149008529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:546,42,0
5    149008521    rs1135093    A    G    620.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_AMINO_ACID_CHANGE=M604V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149008372_149008529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333677    GT:AD:DP:GQ:PL    1/1:0,20:20:51.15:653,51,0
5    149199889    rs32589    G    A    357.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.233;DB;DP=23;Dels=0.0;FS=7.858;HRun=0;HaplotypeScore=3.0776;MQ=58.99;MQ0=0;MQRankSum=-0.525;QD=15.56;ReadPosRankSum=0.525;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARGC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461780    GT:AD:DP:GQ:PL    0/1:11,11:23:99:388,0,208
5    149200043    rs32588    T    C    1037.53    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.232;DB;DP=85;Dels=0.0;FS=0.823;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.626;QD=12.21;ReadPosRankSum=-0.706;SNPEFF_AMINO_ACID_CHANGE=L17;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149199996_149200169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARGC1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000403750    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1068,0,1178
5    149212800    rs32577    G    A    609.79    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=56;Dels=0.0;FS=3.855;HRun=0;HaplotypeScore=0.9993;MQ=58.76;MQ0=0;MQRankSum=0.035;QD=10.89;ReadPosRankSum=-0.035;SNPEFF_AMINO_ACID_CHANGE=P324;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149212219_149213341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARGC1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000403750    GT:AD:DP:GQ:PL    0/1:27,28:56:99:640,0,718
5    149221788    rs26127    G    C    268.89    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DB;DP=23;Dels=0.0;FS=10.263;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=11.69;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARGC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309241    GT:AD:DP:GQ:PL    0/1:12,11:23:99:299,0,333
5    149221992    rs26126    C    T    56.30    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=15;Dels=0.0;FS=3.222;HRun=1;HaplotypeScore=0.9832;MQ=58.45;MQ0=0;MQRankSum=-1.371;QD=3.75;ReadPosRankSum=-1.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARGC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309241    GT:AD:DP:GQ:PL    0/1:11,4:15:86.29:86,0,370
5    149247310    rs143080578    G    A    355.84    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=23;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=0.734;MQ=58.99;MQ0=0;MQRankSum=1.55;QD=15.47;ReadPosRankSum=-0.363;SNPEFF_AMINO_ACID_CHANGE=T751M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149247288_149247362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255266    GT:AD:DP:GQ:PL    0/1:10,13:23:99:386,0,290
5    149276373    rs2244836    T    C    774.47    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=0.173;DB;DP=58;Dels=0.0;FS=1.821;HRun=0;HaplotypeScore=1.9989;MQ=56.98;MQ0=0;MQRankSum=-0.746;QD=13.35;ReadPosRankSum=-1.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255266    GT:AD:DP:GQ:PL    0/1:27,29:58:99:804,0,798
5    149283012    rs152951    T    C    323.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255266    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:357,27,0
5    149283406    rs251346    C    G    1437.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=38.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255266    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1471,105,0
5    149294272    rs30828    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255266    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    149360877    rs30832    T    C    3143.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=I574T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149359856_149366968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286298    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3176,235,0
5    149374879    rs67506783    CT    C    1657.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=2;HaplotypeScore=196.6695;IndelType=D;MQ=60.21;MQ0=0;QD=36.03;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_149372681_149375992;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIGD6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000296736    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1700,132,0
5    149374932    rs10875553    T    C    1746.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=37.16;SNPEFF_AMINO_ACID_CHANGE=Q327R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149372681_149375992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIGD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296736    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1779,135,0
5    149384680    rs6861548    A    G    201.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502717    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:234,18,0
5    149389465    rs1864998    C    T    123.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502717    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
5    149397862    rs17655812    A    G    112.73    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.55;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502717    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:143,0,28
5    149406271    rs6579767    C    T    342.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.5;SNPEFF_AMINO_ACID_CHANGE=A456V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149406269_149406444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGXB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000503427    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:375,27,0
5    149406733    rs2304069    G    T    171.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502717    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:204,15,0
5    149424966    rs2276983    G    A    692.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513318    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:725,57,0
5    149427387    rs2043284    T    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502717    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    149428395    rs216125    C    G    156.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:189,15,0
5    149428424    rs216126    G    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    149431223    rs216131    G    A    1048.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1082,81,0
5    149431259    rs216132    A    G    1432.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1466,105,0
5    149435759    rs216136    G    A    2144.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4239;MQ=59.64;MQ0=0;QD=33.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513609    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2177,168,0
5    149437190    rs216138    C    G    649.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513609    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:682,51,0
5    149439044    rs2027798    C    T    202.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513609    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
5    149439588    rs6866298    T    C    120.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
5    149440723    rs216139    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    149441016    rs138743639    AC    A    717.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=6;HaplotypeScore=239.3484;IndelType=D;MQ=53.57;MQ0=0;QD=19.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:16,20:36:75.06:759,75,0
5    149441022    .    CA    C    192.13    PASS    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=1.94;DP=39;FS=12.378;HRun=1;HaplotypeScore=288.6025;IndelType=D;MQ=54.09;MQ0=0;MQRankSum=-0.269;QD=4.93;ReadPosRankSum=2.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    0/1:31,8:39:99:231,0,140
5    149447628    rs216150    A    G    202.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543093    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:236,18,0
5    149456771    rs2855781    C    A    522.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511344    GT:AD:DP:GQ:PL    1/1:0,24:24:54.06:555,54,0
5    149456772    rs60844779    T    A    523.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511344    GT:AD:DP:GQ:PL    1/1:0,24:24:54.06:556,54,0
5    149457678    rs2228422    G    A    1523.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_AMINO_ACID_CHANGE=T242;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149457675_149457811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1556,114,0
5    149459381    rs2855783    T    C    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511344    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
5    149460553    rs216123    A    G    678.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=27.13;SNPEFF_AMINO_ACID_CHANGE=P28;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149460330_149460587;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSF1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286301    GT:AD:DP:GQ:PL    1/1:0,25:25:54.17:711,54,0
5    149509111    rs1864971    C    T    38.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522466    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
5    149509270    rs1864972    A    G    111.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522466    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:144,12,0
5    149513072    rs2240780    A    G    3134.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=29.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517488    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3167,256,0
5    149513626    rs11740355    T    G    202.69    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.251;DB;DP=33;Dels=0.03;FS=1.444;HRun=0;HaplotypeScore=0.9665;MQ=54.32;MQ0=0;MQRankSum=-0.588;QD=5.96;ReadPosRankSum=-1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517488    GT:AD:DP:GQ:PL    0/1:20,13:33:99:233,0,592
5    149514958    rs758589    T    G    350.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.84;MQ0=0;QD=26.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261799    GT:AD:DP:GQ:PL    1/1:0,13:13:33.04:383,33,0
5    149515074    rs740750    G    A    1760.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261799    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1793,132,0
5    149516480    rs2240781    C    T    170.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261799    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
5    149546426    rs2302274    A    G    45.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.01;SNPEFF_AMINO_ACID_CHANGE=G4;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149546361_149546523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394298    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
5    149576233    rs2270145    G    A    1332.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=29.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513403    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1366,111,0
5    149576273    rs2270146    C    T    2235.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7466;MQ=57.31;MQ0=0;QD=31.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513403    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2269,172,0
5    149578999    rs731376    T    A    489.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513403    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:523,39,0
5    149580819    rs3733680    G    A    439.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:472,36,0
5    149581731    rs2240786    C    G    63.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
5    149582103    rs2240788    C    T    1614.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=2.5439;MQ=54.29;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:1,47:54:99:1648,129,0
5    149583300    rs2240793    T    C    559    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=26.62;SNPEFF_AMINO_ACID_CHANGE=F386;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149583230_149583342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:1,20:21:45.14:592,45,0
5    149583336    rs2240794    T    C    513.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.29;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=D398;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149583230_149583342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:546,42,0
5    149584341    rs6878880    T    C    1403.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.69;MQ0=0;QD=28.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1436,114,0
5    149584969    rs72543480    A    AG    1115.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=1;HaplotypeScore=203.4439;IndelType=I;MQ=58.81;MQ0=0;QD=42.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:1,25:26:78.26:1158,78,0
5    149584981    rs4705425    A    G    721.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=24.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:0,29:29:57.18:754,57,0
5    149585025    rs4705426    A    C    1257.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.61;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=M514L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149585019_149585186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:0,39:39:93.31:1290,93,0
5    149585421    rs4705427    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    149585433    rs3815375    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230671    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    149602280    rs55976097    T    C    224.17    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.259;DB;DP=23;Dels=0.0;FS=16.246;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.097;QD=9.75;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348628    GT:AD:DP:GQ:PL    0/1:15,8:23:99:254,0,410
5    149602363    rs17712679    T    A    144.42    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=13;Dels=0.0;FS=7.16;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=11.11;ReadPosRankSum=1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524041    GT:AD:DP:GQ:PL    0/1:7,6:13:99:174,0,253
5    149602608    rs2241694    A    G    732.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.32;SNPEFF_AMINO_ACID_CHANGE=D459;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149602552_149602780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348628    GT:AD:DP:GQ:PL    1/1:0,25:25:63.15:766,63,0
5    149602824    rs2241695    C    T    100.25    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.14;ReadPosRankSum=2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524041    GT:AD:DP:GQ:PL    0/1:5,4:9:99:130,0,158
5    149610967    rs71893838    AAAT    A    199.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=71.9509;IndelType=D;MQ=57.37;MQ0=0;QD=13.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348628    GT:AD:DP:GQ:PL    1/1:9,6:15:18.06:241,18,0
5    149624901    rs34649296    GCCTCCTCCTCCTCCTCCTCCT    G    533.12    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=167.7558;IndelType=D;MQ=47.82;MQ0=0;MQRankSum=-0.736;QD=59.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348628    GT:AD:DP:GQ:PL    0/1:4,5:9:99:572,0,118
5    149627423    rs7711562    A    G    118.06    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=7.38;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348628    GT:AD:DP:GQ:PL    0/1:10,6:16:99:148,0,295
5    149629683    rs4958452    T    C    279.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515758    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:313,24,0
5    149631413    rs2288799    A    G    619.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=26.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515758    GT:AD:DP:GQ:PL    1/1:0,23:23:48.15:652,48,0
5    149636073    rs10463293    T    G    119.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510347    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
5    149636109    rs10463294    G    A    188.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510347    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:222,18,0
5    149636306    .    G    T    186.66    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.557;QD=4.79;ReadPosRankSum=-0.814;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510347    GT:AD:DP:GQ:PL    0/1:23,16:39:99:217,0,662
5    149636307    .    C    T    177.95    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=4.56;ReadPosRankSum=-0.842;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510347    GT:AD:DP:GQ:PL    0/1:23,16:39:99:208,0,689
5    149644597    rs891938    T    G    364.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507995    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:398,30,0
5    149677803    rs112896077    G    A    91.15    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=1.186;QD=7.6;ReadPosRankSum=-1.031;SNPEFF_AMINO_ACID_CHANGE=P228;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149675906_149678175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328668    GT:AD:DP:GQ:PL    0/1:7,5:12:99:121,0,206
5    149677851    rs6579784    A    G    257.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.36;MQ0=0;QD=23.39;SNPEFF_AMINO_ACID_CHANGE=Y212;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149675906_149678175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328668    GT:AD:DP:GQ:PL    1/1:0,11:11:24.07:290,24,0
5    149743976    rs891941    C    T    129.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323668    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
5    149753988    rs56113366    G    A    73.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323668    GT:AD:DP:GQ:PL    0/1:2,3:5:61.07:103,0,61
5    149754991    rs2071238    C    T    585.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.383;DB;DP=46;Dels=0.0;FS=3.119;HRun=0;HaplotypeScore=1.565;MQ=59.5;MQ0=0;MQRankSum=-0.154;QD=12.72;ReadPosRankSum=0.989;SNPEFF_AMINO_ACID_CHANGE=P449;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149754902_149755117;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323668    GT:AD:DP:GQ:PL    0/1:23,23:46:99:615,0,645
5    149755421    rs2071239    A    G    914.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.969;DB;DP=63;Dels=0.0;FS=1.053;HRun=0;HaplotypeScore=1.9893;MQ=59.63;MQ0=0;MQRankSum=0.945;QD=14.52;ReadPosRankSum=-1.435;SNPEFF_AMINO_ACID_CHANGE=S537;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149755284_149755472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323668    GT:AD:DP:GQ:PL    0/1:31,31:63:99:945,0,1032
5    149755744    rs2071240    G    C    1980.64    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=161;Dels=0.0;FS=2.03;HRun=6;HaplotypeScore=5.73;MQ=59.71;MQ0=0;MQRankSum=1.078;QD=12.3;ReadPosRankSum=1.367;SNPEFF_AMINO_ACID_CHANGE=A588P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149755645_149755893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323668    GT:AD:DP:GQ:PL    0/1:84,76:161:99:2011,0,2495
5    149759065    rs151182547    TCTCTC    T    1177.48    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=5.913;DB;DP=59;FS=2.391;HRun=0;HaplotypeScore=367.8574;IndelType=D;MQ=50.38;MQ0=1;MQRankSum=-5.195;QD=19.62;ReadPosRankSum=1.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323668    GT:AD:DP:GQ:PL    0/1:37,23:59:99:1217,0,2569
5    149759096    rs7713638    T    C    620.85    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.007;DB;DP=64;Dels=0.0;FS=3.561;HRun=0;HaplotypeScore=2.482;MQ=50.76;MQ0=1;MQRankSum=-5.34;QD=9.7;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=V810A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149759095_149759295;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323668    GT:AD:DP:GQ:PL    0/1:35,29:64:99:651,0,1060
5    149759732    rs2569060    T    C    371.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506063    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:404,30,0
5    149772280    rs1136103    C    G    311.17    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=21;Dels=0.0;FS=6.923;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.181;QD=14.82;ReadPosRankSum=-1.05;SNPEFF_AMINO_ACID_CHANGE=P1099R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149772271_149772353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCOF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323668    GT:AD:DP:GQ:PL    0/1:8,13:21:99:341,0,243
5    149786925    rs78441286    A    G    37.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=7.52;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000009530    GT:AD:DP:GQ:PL    0/1:3,2:5:67.60:68,0,98
5    149792113    rs11739355    G    A    244.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.224;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.144;QD=13.56;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000009530    GT:AD:DP:GQ:PL    0/1:9,9:18:99:274,0,212
5    149792135    rs11739357    G    A    300.84    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.69;DB;DP=24;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=1.832;MQ=59.03;MQ0=0;MQRankSum=-0.465;QD=12.54;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000009530    GT:AD:DP:GQ:PL    0/1:13,11:24:99:331,0,366
5    149792337    rs55796634    C    T    1314.52    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.359;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9445;MQ=59.01;MQ0=0;MQRankSum=0.476;QD=13.98;ReadPosRankSum=2.703;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517791    GT:AD:DP:GQ:PL    0/1:45,49:94:99:1345,0,1307
5    149901373    rs10075355    G    C    273.99    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.03;MQ0=0;MQRankSum=0.263;QD=11.42;ReadPosRankSum=2.547;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518299    GT:AD:DP:GQ:PL    0/1:14,10:24:99:304,0,442
5    149907533    rs2273235    T    G    199.05    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.667;QD=14.22;ReadPosRankSum=-0.933;SNPEFF_AMINO_ACID_CHANGE=V227;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149907366_149907860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261797    GT:AD:DP:GQ:PL    0/1:5,9:14:99:229,0,135
5    149907602    rs2273234    A    G    201.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=14;Dels=0.0;FS=5.434;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=14.41;ReadPosRankSum=-0.663;SNPEFF_AMINO_ACID_CHANGE=P250;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149907366_149907860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261797    GT:AD:DP:GQ:PL    0/1:7,7:14:99:232,0,225
5    149914401    rs2545341    T    C    898.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261797    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:932,72,0
5    149919739    rs1290147    G    C    657.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_AMINO_ACID_CHANGE=T554;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_149919644_149919826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261797    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:690,54,0
5    149921251    rs2304063    G    C    244.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=20;Dels=0.0;FS=6.767;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.102;QD=12.23;ReadPosRankSum=-1.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261797    GT:AD:DP:GQ:PL    0/1:10,10:20:99:275,0,314
5    149922208    rs3095905    C    T    33.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.48;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261797    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:64,0,32
5    149931222    rs6579792    T    G    299.79    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.118;QD=27.25;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523350    GT:AD:DP:GQ:PL    0/1:2,9:11:43.67:330,0,44
5    149932602    rs6893285    C    T    272.17    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.076;QD=13.61;ReadPosRankSum=-1.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523350    GT:AD:DP:GQ:PL    0/1:11,9:20:99:302,0,395
5    150051958    rs194134    T    C    602.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.71;SNPEFF_AMINO_ACID_CHANGE=S161P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150051902_150052064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOZ3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297130    GT:AD:DP:GQ:PL    1/1:0,21:21:48.15:636,48,0
5    150282674    rs111355487    A    AT    35.83    QDFilter2    AB=0.889;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.459;DB;DP=64;FS=5.094;HRun=14;HaplotypeScore=218.2067;IndelType=I;MQ=58.72;MQ0=0;MQRankSum=-0.234;QD=0.56;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274599    GT:AD:DP:GQ:PL    0/1:54,8:64:74.86:75,0,664
5    150311622    rs12656542    A    G    201.95    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.427;QD=8.08;ReadPosRankSum=0.204;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF300P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356555    GT:AD:DP:GQ:PL    0/1:17,8:25:99:232,0,641
5    150311678    rs11167525    A    G    652.89    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.646;DB;DP=59;Dels=0.0;FS=1.209;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.509;QD=11.07;ReadPosRankSum=0.963;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF300P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356555    GT:AD:DP:GQ:PL    0/1:30,29:59:99:683,0,934
5    150311773    rs7727919    T    C    732.36    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.17;DB;DP=73;Dels=0.0;FS=2.152;HRun=4;HaplotypeScore=0.8321;MQ=60.29;MQ0=0;MQRankSum=0.942;QD=9.9;ReadPosRankSum=2.053;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF300P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356555    GT:AD:DP:GQ:PL    0/1:43,30:73:99:762,0,1327
5    150311857    rs10719367    CT    C    326.41    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.095;DB;DP=33;FS=1.533;HRun=1;HaplotypeScore=115.3816;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.555;QD=9.89;ReadPosRankSum=0.635;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF300P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356555    GT:AD:DP:GQ:PL    0/1:22,11:33:99:365,0,897
5    150322071    rs17800981    G    T    562.25    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.645;DB;DP=64;Dels=0.0;FS=11.812;HRun=1;HaplotypeScore=1.9924;MQ=60.0;MQ0=0;MQRankSum=-0.688;QD=8.79;ReadPosRankSum=0.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF300P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356555    GT:AD:DP:GQ:PL    0/1:44,20:64:99:592,0,1401
5    150400087    rs8177412    T    C    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388825    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:68,0,33
5    150407456    rs8177447    T    C    964.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519214    GT:AD:DP:GQ:PL    1/1:0,35:35:75.21:998,75,0
5    150410135    rs3924    G    A    72.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.1;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388825    GT:AD:DP:GQ:PL    0/1:3,3:6:98.32:103,0,98
5    150410219    rs2233311    C    A    284.16    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=14.96;ReadPosRankSum=-0.933;SNPEFF_AMINO_ACID_CHANGE=R631I;SNPEFF_CODON_CHANGE=aGa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150410142_150410234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518977    GT:AD:DP:GQ:PL    0/1:9,10:19:99:314,0,242
5    150413406    rs2233305    A    C    312.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388825    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:346,27,0
5    150414388    rs11747926    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315050    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
5    150414945    rs11748040    A    G    259.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315050    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
5    150414960    rs11748041    A    C    228.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315050    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:262,21,0
5    150415098    rs2233302    C    G    495.01    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.993;DB;DP=32;Dels=0.0;FS=1.638;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.218;QD=15.47;ReadPosRankSum=0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315050    GT:AD:DP:GQ:PL    0/1:12,20:32:99:525,0,370
5    150415338    rs2287720    C    T    109.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=10.96;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315050    GT:AD:DP:GQ:PL    0/1:6,4:10:99:140,0,165
5    150425467    rs2233299    G    A    710.88    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.787;DB;DP=63;Dels=0.0;FS=5.275;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.903;QD=11.28;ReadPosRankSum=0.255;SNPEFF_AMINO_ACID_CHANGE=G244;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150425422_150425511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520931    GT:AD:DP:GQ:PL    0/1:37,26:63:99:741,0,917
5    150429563    rs2233294    A    C    1527.11    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=3.595;DB;DP=128;Dels=0.0;FS=1.91;HRun=1;HaplotypeScore=1.5226;MQ=59.82;MQ0=0;MQRankSum=0.551;QD=11.93;ReadPosRankSum=-0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315050    GT:AD:DP:GQ:PL    0/1:69,59:128:99:1557,0,2094
5    150483095    rs4958892    A    G    2724.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2758,226,0
5    150484889    rs868531    G    A    2389.84    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.014;DB;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.8453;MQ=59.32;MQ0=0;MQRankSum=0.064;QD=15.22;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    0/1:69,88:157:99:2420,0,1880
5    150489390    rs1133202    A    G    519.81    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.121;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=59.56;MQ0=0;MQRankSum=-0.567;QD=12.38;ReadPosRankSum=-0.541;SNPEFF_AMINO_ACID_CHANGE=P193;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150489314_150489407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377751    GT:AD:DP:GQ:PL    0/1:22,20:42:99:550,0,727
5    150498754    rs2303021    A    G    60.92    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=6.77;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519644    GT:AD:DP:GQ:PL    0/1:5,4:9:90.91:91,0,138
5    150498981    rs2303022    C    G    711.64    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.75;DB;DP=46;Dels=0.0;FS=4.091;HRun=1;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=15.47;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520054    GT:AD:DP:GQ:PL    0/1:21,25:46:99:742,0,638
5    150499080    rs2303023    T    C    194.52    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=17.68;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520054    GT:AD:DP:GQ:PL    0/1:4,7:11:99:225,0,132
5    150499102    rs2303024    A    G    102.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.05;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520054    GT:AD:DP:GQ:PL    0/1:2,4:6:61.95:132,0,62
5    150503675    rs2303025    T    C    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517707    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,71
5    150503784    rs2303027    C    T    237.20    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.065;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=10.31;ReadPosRankSum=0.549;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517707    GT:AD:DP:GQ:PL    0/1:15,8:23:99:267,0,495
5    150516887    rs2303034    G    C    604.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:637,51,0
5    150517025    rs9324679    C    G    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
5    150518068    rs17728578    T    A    895.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:928,69,0
5    150518358    rs3213802    A    G    40.96    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.7407;MQ=59.07;MQ0=0;MQRankSum=1.637;QD=0.55;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:1,74:75:8.97:73,9,0
5    150518359    rs3213803    G    A    44.96    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.7407;MQ=59.07;MQ0=0;MQRankSum=1.636;QD=0.6;ReadPosRankSum=0.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:1,73:74:8.99:77,9,0
5    150518435    rs3213804    T    G    811.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:844,63,0
5    150518532    rs3815725    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
5    150518892    rs78122626    GC    G    1766.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=3;HaplotypeScore=143.5549;IndelType=D;MQ=60.44;MQ0=0;QD=36.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354546    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1809,147,0
5    150518988    rs2228458    G    A    2065.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.39;MQ0=0;QD=37.55;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150518914_150519008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000517757    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2098,156,0
5    150563302    rs12518395    G    T    75.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.97;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522964    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:106,0,30
5    150565276    rs168699    G    A    158.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.191;QD=13.21;ReadPosRankSum=-2.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355417    GT:AD:DP:GQ:PL    0/1:6,6:12:99:189,0,203
5    150565770    rs193728    G    A    326    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.306;QD=11.24;ReadPosRankSum=-1.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355417    GT:AD:DP:GQ:PL    0/1:17,12:29:99:356,0,598
5    150566792    rs448503    T    C    34.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.75;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355417    GT:AD:DP:GQ:PL    0/1:2,2:4:64.97:65,0,74
5    150567049    rs35230928    CA    C    304.88    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=3.676;DB;DP=29;FS=3.867;HRun=2;HaplotypeScore=92.6404;IndelType=D;MQ=51.64;MQ0=0;MQRankSum=-2.985;QD=10.51;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355417    GT:AD:DP:GQ:PL    0/1:19,10:29:99:344,0,639
5    150567074    rs36036156    T    TG    344.73    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=79.5964;IndelType=I;MQ=49.23;MQ0=0;MQRankSum=-3.264;QD=14.99;ReadPosRankSum=0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355417    GT:AD:DP:GQ:PL    0/1:14,9:23:99:384,0,402
5    150567145    rs454130    G    A    62    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=8.86;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355417    GT:AD:DP:GQ:PL    0/1:4,3:7:91.99:92,0,137
5    150639162    rs16838    C    G    68.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=11.48;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357164    GT:AD:DP:GQ:PL    0/1:3,3:6:98.90:99,0,104
5    150639224    rs153476    T    A    339.13    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.93;QD=26.09;ReadPosRankSum=-1.944;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357164    GT:AD:DP:GQ:PL    0/1:3,10:13:82.59:369,0,83
5    150639409    rs153477    A    G    578.77    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.7;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.639;QD=22.26;ReadPosRankSum=-1.187;SNPEFF_AMINO_ACID_CHANGE=I59V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150639316_150639477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GM2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357164    GT:AD:DP:GQ:PL    0/1:6,20:26:99:609,0,173
5    150639439    rs153478    A    G    526.14    PASS    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.393;QD=21.05;ReadPosRankSum=0.272;SNPEFF_AMINO_ACID_CHANGE=M69V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150639316_150639477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GM2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357164    GT:AD:DP:GQ:PL    0/1:7,18:25:99:556,0,176
5    150660769    rs1368393    A    G    331.90    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=32;Dels=0.0;FS=2.043;HRun=1;HaplotypeScore=0.9159;MQ=55.64;MQ0=0;MQRankSum=0.153;QD=10.37;ReadPosRankSum=1.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:19,13:32:99:362,0,602
5    150660794    rs1368394    G    A    334.08    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.178;QD=15.91;ReadPosRankSum=0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:9,12:21:99:364,0,307
5    150663565    rs1347147    A    C    887.61    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.737;QD=14.55;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:31,30:61:99:918,0,986
5    150663655    rs17660011    C    T    2223.01    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.179;DB;DP=152;Dels=0.0;FS=0.646;HRun=2;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-0.334;QD=14.63;ReadPosRankSum=-0.747;SNPEFF_AMINO_ACID_CHANGE=K308;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150663605_150663771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:80,72:152:99:2253,0,2528
5    150664183    rs17111902    G    C    350.46    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=2.552;DB;DP=35;Dels=0.0;FS=3.261;HRun=2;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.071;QD=10.01;ReadPosRankSum=1.595;SNPEFF_AMINO_ACID_CHANGE=G266;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150664174_150664272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:22,13:35:99:380,0,579
5    150666843    rs6579846    A    G    533.18    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.944;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.07;QD=13.67;ReadPosRankSum=0.493;SNPEFF_AMINO_ACID_CHANGE=L224;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150666807_150667025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:18,21:39:99:563,0,560
5    150666946    rs17660042    C    T    423.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.073;QD=15.12;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=R190H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150666807_150667025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:14,14:28:99:453,0,328
5    150667016    rs978012    T    C    103.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=10.38;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=K167E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150666807_150667025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,182
5    150682975    rs6887412    T    C    208.81    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=16.06;ReadPosRankSum=0.437;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_5_150682788_150683327;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:5,8:13:99:239,0,166
5    150683005    rs28481793    T    C    115.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.001;QD=12.82;ReadPosRankSum=-1.422;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_5_150682788_150683327;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335230    GT:AD:DP:GQ:PL    0/1:3,6:9:99:145,0,101
5    150696171    rs400878    T    C    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335244    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
5    150696265    rs10045447    T    C    150.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=16.72;ReadPosRankSum=0.361;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335244    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,127
5    150696447    rs369907    C    T    459.04    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.232;DB;DP=46;Dels=0.0;FS=5.014;HRun=1;HaplotypeScore=0.0;MQ=51.27;MQ0=0;MQRankSum=1.333;QD=9.98;ReadPosRankSum=-0.404;SNPEFF_AMINO_ACID_CHANGE=Q185;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150694543_150696649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450886    GT:AD:DP:GQ:PL    0/1:26,20:46:99:489,0,688
5    150696496    rs10042608    G    A    660.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.158;DB;DP=33;Dels=0.0;FS=11.8;HRun=0;HaplotypeScore=0.9734;MQ=53.99;MQ0=0;MQRankSum=0.401;QD=20.01;ReadPosRankSum=-0.783;SNPEFF_AMINO_ACID_CHANGE=A169V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150694543_150696649;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450886    GT:AD:DP:GQ:PL    0/1:11,22:33:99:690,0,300
5    150696498    rs428064    G    A    224.84    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.04;DB;DP=33;Dels=0.0;FS=11.301;HRun=0;HaplotypeScore=0.9734;MQ=53.21;MQ0=0;MQRankSum=-0.079;QD=6.81;ReadPosRankSum=-0.079;SNPEFF_AMINO_ACID_CHANGE=D168;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150694543_150696649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450886    GT:AD:DP:GQ:PL    0/1:21,12:33:99:255,0,680
5    150696540    rs431240    C    T    246.19    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=29;Dels=0.0;FS=6.964;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.542;QD=8.49;ReadPosRankSum=-0.966;SNPEFF_AMINO_ACID_CHANGE=T154;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150694543_150696649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450886    GT:AD:DP:GQ:PL    0/1:20,9:29:99:276,0,652
5    150704724    rs246497    T    C    120.83    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.17;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335244    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:151,0,27
5    150704758    rs246496    A    G    142.89    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=20.41;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335244    GT:AD:DP:GQ:PL    0/1:1,6:7:21.95:173,0,22
5    150718874    rs2431080    C    A    81.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=16.35;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335244    GT:AD:DP:GQ:PL    0/1:1,3:5:23.21:112,0,23
5    150723806    rs192192    G    A    307.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.202;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.375;QD=12.81;ReadPosRankSum=-0.029;SNPEFF_AMINO_ACID_CHANGE=L63;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150723738_150723828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335244    GT:AD:DP:GQ:PL    0/1:12,12:24:99:337,0,352
5    150838284    rs35256722    C    G    144.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.452;QD=8.04;ReadPosRankSum=-0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243389    GT:AD:DP:GQ:PL    0/1:12,6:18:99:175,0,388
5    150838293    rs35074529    T    C    199.82    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.743;DB;DP=20;Dels=0.0;FS=9.951;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.664;QD=9.99;ReadPosRankSum=-0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243389    GT:AD:DP:GQ:PL    0/1:13,7:20:99:230,0,421
5    150843996    rs415426    T    C    196.61    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=17.87;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517945    GT:AD:DP:GQ:PL    0/1:3,8:11:92.56:227,0,93
5    150844647    rs34478431    C    G    465    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.212;DB;DP=41;Dels=0.0;FS=3.151;HRun=0;HaplotypeScore=0.9947;MQ=59.44;MQ0=0;MQRankSum=0.352;QD=11.34;ReadPosRankSum=-1.082;SNPEFF_AMINO_ACID_CHANGE=S112;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150844635_150844730;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243389    GT:AD:DP:GQ:PL    0/1:20,21:41:99:495,0,684
5    150886616    rs7723079    G    A    126.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
5    150886725    rs7723266    G    A    768.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;QD=32.03;SNPEFF_AMINO_ACID_CHANGE=S4169;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150886715_150887172;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,24:24:63.15:802,63,0
5    150886882    rs1105168    G    A    1444.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=P4117L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150886715_150887172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1478,108,0
5    150887184    rs75548276    G    GAGA    906.86    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.739;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=102.4153;IndelType=I;MQ=57.93;MQ0=0;MQRankSum=-0.227;QD=27.48;ReadPosRankSum=0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:16,17:33:99:946,0,625
5    150889805    rs6870300    A    T    352.99    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=3.118;DB;DP=39;Dels=0.0;FS=4.658;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.834;QD=9.05;ReadPosRankSum=-2.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:25,14:39:99:383,0,862
5    150891663    rs6862750    T    C    30.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9106;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=3.41;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:6,3:9:60.68:61,0,181
5    150891733    rs2304028    A    G    178.09    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.543;DB;DP=23;Dels=0.0;FS=2.128;HRun=0;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=0.598;QD=7.74;ReadPosRankSum=-0.535;SNPEFF_AMINO_ACID_CHANGE=H3966;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150891726_150892167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:14,9:23:99:208,0,430
5    150901111    rs3822699    A    G    452.42    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.329;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0321;MQ=60.0;MQ0=0;MQRankSum=-0.834;QD=9.84;ReadPosRankSum=-0.202;SNPEFF_AMINO_ACID_CHANGE=D3681;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150900837_150901647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:26,19:46:99:482,0,634
5    150901261    rs6650971    C    T    424.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.459;DB;DP=24;Dels=0.0;FS=7.384;HRun=0;HaplotypeScore=0.0;MQ=57.85;MQ0=0;MQRankSum=1.562;QD=17.67;ReadPosRankSum=-1.745;SNPEFF_AMINO_ACID_CHANGE=M3631I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150900837_150901647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:8,16:24:99:454,0,220
5    150901300    rs3734046    G    A    397.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=21;Dels=0.0;FS=4.419;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.92;ReadPosRankSum=-0.336;SNPEFF_AMINO_ACID_CHANGE=Y3618;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150900837_150901647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:7,14:21:99:427,0,209
5    150901613    rs2053028    A    G    238.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=16;Dels=0.0;FS=15.564;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=14.9;ReadPosRankSum=1.473;SNPEFF_AMINO_ACID_CHANGE=L3514S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150900837_150901647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:6,9:16:99:268,0,206
5    150914184    rs1432643    A    T    613.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=40;Dels=0.0;FS=8.091;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;MQRankSum=-0.913;QD=15.33;ReadPosRankSum=-0.969;SNPEFF_AMINO_ACID_CHANGE=T3071;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150913970_150914203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:20,20:40:99:643,0,576
5    150917545    rs3816007    G    A    1037.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1071,84,0
5    150923405    rs6892335    A    G    1512.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.89;SNPEFF_AMINO_ACID_CHANGE=F2428S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150921846_150925898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1545,120,0
5    150925144    rs3797875    A    G    2503.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=59.17;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=P1848;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150921846_150925898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2537,202,0
5    150942919    rs6872614    A    G    1487.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=Y1181H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150942886_150943200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1520,111,0
5    150942969    rs2304053    G    A    518.98    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=51;Dels=0.0;FS=2.512;HRun=0;HaplotypeScore=1.7866;MQ=59.63;MQ0=0;MQRankSum=0.273;QD=10.18;ReadPosRankSum=-1.566;SNPEFF_AMINO_ACID_CHANGE=P1164L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150942886_150943200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:33,18:51:99:549,0,1030
5    150943085    rs2304054    G    A    690.18    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.709;DB;DP=66;Dels=0.01;FS=6.768;HRun=1;HaplotypeScore=3.489;MQ=59.31;MQ0=0;MQRankSum=1.398;QD=10.3;ReadPosRankSum=0.391;SNPEFF_AMINO_ACID_CHANGE=I1125;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150942886_150943200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:38,28:66:99:720,0,1056
5    150945483    rs3734055    C    T    154.14    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=14.01;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=G1004S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:5,6:11:99:184,0,143
5    150945699    rs10085060    G    A    421.67    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=23;Dels=0.0;FS=1.643;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.155;QD=18.33;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=L932;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:10,13:23:99:452,0,329
5    150945862    rs3734057    A    G    355.60    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.974;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.046;QD=9.12;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=V877;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:24,15:39:99:386,0,702
5    150945931    rs3734058    C    T    431.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=40;Dels=0.0;FS=1.283;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.213;QD=10.79;ReadPosRankSum=0.014;SNPEFF_AMINO_ACID_CHANGE=R854;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:24,16:40:99:462,0,700
5    150946132    rs3734059    G    A    454.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.08;DB;DP=36;Dels=0.0;FS=7.319;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.939;QD=12.63;ReadPosRankSum=-1.066;SNPEFF_AMINO_ACID_CHANGE=I787;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:20,16:36:99:485,0,670
5    150946436    rs9324700    A    G    1010.34    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.002;DB;DP=75;Dels=0.0;FS=0.894;HRun=0;HaplotypeScore=1.6988;MQ=59.38;MQ0=0;MQRankSum=-0.822;QD=13.47;ReadPosRankSum=1.087;SNPEFF_AMINO_ACID_CHANGE=F686S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1040,0,1232
5    150946773    rs1432862    G    A    1237.98    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.997;DB;DP=91;Dels=0.0;FS=5.357;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=0.323;QD=13.6;ReadPosRankSum=0.428;SNPEFF_AMINO_ACID_CHANGE=R574C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:47,44:91:99:1268,0,1349
5    150946966    rs1465690    G    A    1312.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=P509;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1345,108,0
5    150947719    rs3734060    C    T    440.60    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.209;QD=12.59;ReadPosRankSum=1.176;SNPEFF_AMINO_ACID_CHANGE=S258;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_150945234_150948505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    0/1:19,16:35:99:471,0,604
5    150948537    rs1469680    T    C    1060.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.84;MQ0=0;QD=26.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,40:40:90.24:1094,90,0
5    150948653    rs1469679    A    G    312.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261800    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:346,27,0
5    151049404    rs7719521    A    C    1193.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521327    GT:AD:DP:GQ:PL    1/1:0,38:38:96.26:1227,96,0
5    151052563    rs1864966    T    C    267.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=29.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522348    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:300,24,0
5    151052659    rs1978707    G    A    2532.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPARC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522348    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2565,193,0
5    151183345    rs6860383    G    A    176.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G3BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274596    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
5    151304306    rs2071221    G    A    146.68    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=18.33;ReadPosRankSum=0.747;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471351    GT:AD:DP:GQ:PL    0/1:1,7:8:23.18:177,0,23
5    151771817    rs1363422    C    T    1930.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.82;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=A395T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_151771093_151772062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMUR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255262    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1963,147,0
5    151784183    rs3749787    G    A    535.96    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.59;DB;DP=36;Dels=0.0;FS=3.797;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.63;QD=14.89;ReadPosRankSum=-0.936;SNPEFF_AMINO_ACID_CHANGE=L164;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_151783949_151784840;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMUR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255262    GT:AD:DP:GQ:PL    0/1:16,20:36:99:566,0,500
5    153029852    rs72469632    ACTGT    A    467.79    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=4.375;DB;DP=29;FS=2.649;HRun=0;HaplotypeScore=128.2414;IndelType=D;MQ=58.16;MQ0=0;MQRankSum=-0.941;QD=16.13;ReadPosRankSum=-0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285900    GT:AD:DP:GQ:PL    0/1:18,11:29:99:507,0,1264
5    153029960    rs707176    T    C    435.21    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5572;MQ=58.41;MQ0=0;MQRankSum=-0.355;QD=9.89;ReadPosRankSum=-0.746;SNPEFF_AMINO_ACID_CHANGE=I108;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_153029890_153030074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRIA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521843    GT:AD:DP:GQ:PL    0/1:24,20:44:99:465,0,864
5    153035525    rs2963944    A    G    503.98    PASS    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=1.25;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9717;MQ=58.78;MQ0=0;MQRankSum=-1.65;QD=26.53;ReadPosRankSum=-0.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520966    GT:AD:DP:GQ:PL    0/1:4,15:19:99:534,0,109
5    153053900    rs141705706    TA    T    554.24    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=3.464;DB;DP=37;FS=0.0;HRun=2;HaplotypeScore=124.4801;IndelType=D;MQ=59.67;MQ0=0;MQRankSum=-0.395;QD=14.98;ReadPosRankSum=0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285900    GT:AD:DP:GQ:PL    0/1:18,19:37:99:593,0,653
5    153054326    rs7709884    G    A    60.01    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=5.46;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285900    GT:AD:DP:GQ:PL    0/1:8,3:11:90:90,0,301
5    153077484    rs12519746    G    A    213.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285900    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:246,21,0
5    153085668    .    T    TTTTGTTTG    1532.58    PASS    AC=2;AF=1.00;AN=2;DP=30;FS=0.0;HRun=0;HaplotypeScore=186.5916;IndelType=I;MQ=50.93;MQ0=0;QD=51.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285900    GT:AD:DP:GQ:PL    1/1:16,13:30:57.19:1575,57,0
5    153144216    rs3813470    A    G    364.68    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.064;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=18.23;ReadPosRankSum=2.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285900    GT:AD:DP:GQ:PL    0/1:9,11:20:99:395,0,238
5    153382518    rs34136150    G    A    1549.97    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=0.409;DB;DP=99;Dels=0.0;FS=2.125;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-1.915;QD=15.66;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=T265;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_153382407_153382529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM114A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520313    GT:AD:DP:GQ:PL    0/1:49,50:99:99:1580,0,1432
5    153674536    rs139016870    TTGTGTG    T    296.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=85.8062;IndelType=D;MQ=49.64;MQ0=0;MQRankSum=-0.751;QD=26.99;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    1/1:2,5:11:10.57:338,11,0
5    153677361    rs74446845    T    TTCCCC    1147.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=163.8276;IndelType=I;MQ=32.01;MQ0=0;MQRankSum=-1.736;QD=76.5;ReadPosRankSum=1.504;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    1/1:1,13:15:27.20:1190,27,0
5    153709043    rs1004976    G    A    515.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:549,42,0
5    153719680    rs60794063    C    G    2362.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2395,175,0
5    153726769    rs13186787    A    G    552.61    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2081;MQ=57.66;MQ0=0;MQRankSum=-0.268;QD=11.51;ReadPosRankSum=-1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    0/1:25,23:48:99:583,0,725
5    153726882    rs10515707    A    G    585.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:619,48,0
5    153783587    rs4958733    A    G    111.01    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=10.09;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    0/1:5,6:11:99:141,0,137
5    153788991    rs2112605    G    C    686.74    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.846;DB;DP=49;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=4.3973;MQ=59.05;MQ0=0;MQRankSum=0.867;QD=14.02;ReadPosRankSum=0.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519544    GT:AD:DP:GQ:PL    0/1:26,23:49:99:717,0,801
5    153795067    rs7727641    C    T    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
5    153795274    rs11321246    TA    T    1462.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=8;HaplotypeScore=165.8293;IndelType=D;MQ=60.15;MQ0=0;QD=26.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297107    GT:AD:DP:GQ:PL    1/1:2,53:55:99:1505,156,0
5    153830890    rs2277939    G    A    30.48    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=3.81;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP30L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519683    GT:AD:DP:GQ:PL    0/1:6,2:8:60.47:60,0,225
5    153832920    rs17116163    G    T    436.03    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.215;DB;DP=41;Dels=0.0;FS=1.684;HRun=1;HaplotypeScore=0.9973;MQ=59.44;MQ0=0;MQRankSum=0.887;QD=10.63;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP30L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519683    GT:AD:DP:GQ:PL    0/1:24,17:41:99:466,0,781
5    153857038    rs34198899    C    G    558.97    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=48;Dels=0.0;FS=7.086;HRun=0;HaplotypeScore=0.9947;MQ=59.52;MQ0=0;MQRankSum=0.479;QD=11.65;ReadPosRankSum=-0.82;SNPEFF_AMINO_ACID_CHANGE=R177;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_153857026_153857824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231121    GT:AD:DP:GQ:PL    0/1:30,18:48:99:589,0,970
5    154065299    rs11372758    A    AG    317.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=60.3871;IndelType=I;MQ=52.16;MQ0=0;QD=28.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408625    GT:AD:DP:GQ:PL    1/1:1,10:10:24.08:359,24,0
5    154065382    rs34889453    TA    T    2434.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.598;DB;DP=75;FS=0.0;HRun=3;HaplotypeScore=304.3635;IndelType=D;MQ=60.04;MQ0=0;MQRankSum=1.57;QD=32.46;ReadPosRankSum=0.375;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408625    GT:AD:DP:GQ:PL    1/1:6,69:75:99:2477,204,0
5    154065495    rs11958012    G    A    1564.39    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=153;Dels=0.0;FS=4.028;HRun=0;HaplotypeScore=1.5661;MQ=58.48;MQ0=0;MQRankSum=-0.166;QD=10.22;ReadPosRankSum=-0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408625    GT:AD:DP:GQ:PL    0/1:82,71:153:99:1594,0,2313
5    154065496    rs4958759    G    C    4831.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.48;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408625    GT:AD:DP:GQ:PL    1/1:0,153:153:99:4831,397,0
5    154065758    rs4958760    A    G    80.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=51.77;MQ0=0;QD=26.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1303;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408625    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
5    154135802    rs115865323    C    T    126.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336314    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
5    154169739    rs17116433    G    A    340.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336314    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:374,27,0
5    154170349    rs78818793    C    A    274.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336314    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:307,24,0
5    154179340    rs75326307    A    G    1842.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336314    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1876,144,0
5    154179357    rs74562835    T    C    1683.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336314    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1717,138,0
5    154181996    rs75657991    T    G    778.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518595    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:812,63,0
5    154183542    rs75677081    C    T    116.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518595    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
5    154185276    rs181037844    A    C    380.12    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=15.84;ReadPosRankSum=0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518297    GT:AD:DP:GQ:PL    0/1:10,14:24:99:410,0,332
5    154185731    rs17116442    A    G    306.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518297    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:340,27,0
5    154193735    rs863649    A    G    126.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326080    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
5    154210339    rs112084781    C    CAGG    1587.16    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.866;DB;DP=56;FS=3.765;HRun=0;HaplotypeScore=195.5355;IndelType=I;MQ=56.27;MQ0=0;MQRankSum=1.29;QD=28.34;ReadPosRankSum=0.685;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517874    GT:AD:DP:GQ:PL    0/1:30,25:56:99:1626,0,1194
5    154217616    rs17116489    C    T    287.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.061;QD=19.14;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326080    GT:AD:DP:GQ:PL    0/1:5,10:15:99:317,0,166
5    154250409    .    C    T    604.78    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.936;DP=66;Dels=0.0;FS=9.74;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.44;QD=9.16;ReadPosRankSum=1.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNOT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517568    GT:AD:DP:GQ:PL    0/1:40,26:66:99:635,0,1221
5    154254818    rs17116534    C    T    727.12    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=57;Dels=0.0;FS=5.947;HRun=1;HaplotypeScore=2.9579;MQ=59.6;MQ0=0;MQRankSum=2.074;QD=12.76;ReadPosRankSum=-1.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNOT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517568    GT:AD:DP:GQ:PL    0/1:34,23:57:99:757,0,1090
5    154268902    rs816739    C    T    1888.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=A1446;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154268881_154268977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1922,144,0
5    154271391    rs702743    A    C    985.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1019,81,0
5    154271948    rs816736    G    A    750.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.11;SNPEFF_AMINO_ACID_CHANGE=D1253;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154271947_154272109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:784,57,0
5    154275786    rs6865950    G    A    465.90    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=43;Dels=0.0;FS=10.3;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.138;QD=10.83;ReadPosRankSum=1.143;SNPEFF_AMINO_ACID_CHANGE=P1155S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154275652_154275903;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:27,16:43:99:496,0,946
5    154275962    rs816747    G    A    222.16    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=58.99;MQ0=0;MQRankSum=1.263;QD=9.66;ReadPosRankSum=-0.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:14,9:23:99:252,0,506
5    154276011    rs75123260    C    A    149.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.369;QD=10.71;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:8,6:14:99:180,0,238
5    154276061    rs816746    A    G    64.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=16.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,4:4:9:96,9,0
5    154278791    rs140322037    C    T    1317.12    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.526;DB;DP=85;Dels=0.0;FS=9.021;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=15.5;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=V1032I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154278751_154278870;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:46,39:85:99:1347,0,1330
5    154278888    rs816740    C    T    2131.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2165,160,0
5    154281216    rs863650    G    A    209.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
5    154282235    rs1421813    T    C    660.36    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.834;DB;DP=58;Dels=0.0;FS=1.079;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.093;QD=11.39;ReadPosRankSum=-0.33;SNPEFF_AMINO_ACID_CHANGE=G910;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154282099_154282236;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:28,30:58:99:690,0,803
5    154282243    rs1421814    G    C    805.63    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.783;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.16;QD=15.2;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:26,27:53:99:836,0,839
5    154282407    rs1421815    C    A    79.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.81;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:2,3:5:64.17:109,0,64
5    154287115    rs6580119    T    C    533.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:566,42,0
5    154291219    rs6580121    A    G    598.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:631,51,0
5    154291409    rs1974777    C    T    791.81    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=3.642;DB;DP=47;Dels=0.0;FS=3.078;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.011;QD=16.85;ReadPosRankSum=-1.052;SNPEFF_AMINO_ACID_CHANGE=R682Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154291287_154291458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:17,30:47:99:822,0,409
5    154291496    rs1974776    G    A    245.37    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=18.87;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:5,8:13:99:275,0,133
5    154297808    rs348737    G    A    132.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
5    154300940    rs348739    A    C    675.57    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.827;DB;DP=49;Dels=0.0;FS=1.169;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.846;QD=13.79;ReadPosRankSum=0.887;SNPEFF_AMINO_ACID_CHANGE=T475;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154300903_154300985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:24,25:49:99:706,0,721
5    154304331    rs6580122    C    T    59.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=19.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523355    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:92,9,0
5    154306972    rs2258437    T    C    538.02    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=43;Dels=0.0;FS=4.912;HRun=0;HaplotypeScore=0.8941;MQ=59.57;MQ0=0;MQRankSum=-1.188;QD=12.51;ReadPosRankSum=0.253;SNPEFF_AMINO_ACID_CHANGE=L351;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154306945_154307110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:24,19:43:99:568,0,791
5    154308282    rs2644743    C    T    307.23    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=3.333;DB;DP=35;Dels=0.0;FS=5.465;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.703;QD=8.78;ReadPosRankSum=0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:23,12:35:99:337,0,611
5    154308307    rs1035368    G    A    393.84    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.218;QD=14.59;ReadPosRankSum=-0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:14,13:27:99:424,0,465
5    154311576    rs2544866    T    C    708.95    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.23;DB;DP=43;Dels=0.0;FS=2.292;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.863;QD=16.49;ReadPosRankSum=0.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:20,23:43:99:739,0,655
5    154320596    rs28372688    A    G    435.99    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.711;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.207;QD=13.21;ReadPosRankSum=0.414;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285873    GT:AD:DP:GQ:PL    0/1:17,16:33:99:466,0,600
5    154336553    rs2291780    C    G    64.31    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=5.85;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265229    GT:AD:DP:GQ:PL    0/1:8,3:11:94.30:94,0,299
5    154336832    rs1421819    C    T    333.15    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.942;DB;DP=31;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;MQRankSum=-0.26;QD=10.75;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265229    GT:AD:DP:GQ:PL    0/1:18,13:31:99:363,0,638
5    154346259    rs14922    A    G    409.68    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.258;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.548;QD=9.99;ReadPosRankSum=0.575;SNPEFF_AMINO_ACID_CHANGE=S141;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154346246_154348971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523037    GT:AD:DP:GQ:PL    0/1:25,16:41:99:440,0,673
5    154395158    rs6580126    G    T    2475.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;QD=38.08;SNPEFF_AMINO_ACID_CHANGE=R580L;SNPEFF_CODON_CHANGE=cGt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154393315_154397692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435029    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2508,184,0
5    154395458    rs17116710    G    A    4038.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.84;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=R680H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154393315_154397692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435029    GT:AD:DP:GQ:PL    1/1:0,115:115:99:4039,295,0
5    154395682    rs56080630    G    A    1143.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=V755I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154393315_154397692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435029    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1177,90,0
5    154396505    rs60928118    G    A    3323.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DB;DP=99;Dels=0.0;FS=4.23;HRun=0;HaplotypeScore=1.9125;MQ=59.58;MQ0=0;MQRankSum=-1.732;QD=33.57;ReadPosRankSum=1.452;SNPEFF_AMINO_ACID_CHANGE=R1029H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_154393315_154397692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435029    GT:AD:DP:GQ:PL    1/1:1,98:99:99:3323,219,0
5    155756299    rs11744154    A    G    82.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
5    155756414    rs11740347    G    A    283.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
5    155771356    rs8180473    A    G    151.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
5    155771421    rs150481351    A    AT    813.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=9;HaplotypeScore=56.9086;IndelType=I;MQ=60.42;MQ0=0;QD=31.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    1/1:0,26:26:78.20:855,78,0
5    155771579    rs1801193    T    C    3688.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7352;MQ=58.83;MQ0=0;QD=37.26;SNPEFF_AMINO_ACID_CHANGE=Y27;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_155771499_155771687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435422    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3689,286,0
5    155771773    rs4434364    A    G    1115.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8561;MQ=58.63;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    1/1:0,34:34:87.25:1149,87,0
5    155771879    rs9313890    G    A    112.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
5    155885469    rs11954391    T    C    1071.69    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.703;DB;DP=92;Dels=0.0;FS=1.804;HRun=0;HaplotypeScore=0.9734;MQ=53.84;MQ0=0;MQRankSum=-3.413;QD=11.65;ReadPosRankSum=-0.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1102,0,1501
5    156074654    rs36045528    TAAATTGA    T    400.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=52.8891;IndelType=D;MQ=37.69;MQ0=0;QD=57.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:443,18,0
5    156087348    rs157322    C    T    40.91    MQFilter40;QDFilter2    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.732;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.36;MQ0=11;MQRankSum=-0.634;QD=1.41;ReadPosRankSum=1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337851    GT:AD:DP:GQ:PL    0/1:19,8:28:70.91:71,0,172
5    156278078    rs62619239    G    A    913.10    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.487;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=46.17;MQ0=2;MQRankSum=0.514;QD=11.71;ReadPosRankSum=-0.832;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=PPP1R2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420481    GT:AD:DP:GQ:PL    0/1:41,37:78:99:943,0,1114
5    156349362    rs11134456    T    C    113.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=11.32;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274532    GT:AD:DP:GQ:PL    0/1:5,5:10:99:143,0,177
5    156376703    rs6873053    A    G    1271.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=V240A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156376662_156376742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274532    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1305,96,0
5    156381370    rs7724832    G    A    107.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=8.92;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274532    GT:AD:DP:GQ:PL    0/1:6,6:12:99:137,0,211
5    156390297    rs6882076    T    C    511.20    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.3;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.62;QD=16.49;ReadPosRankSum=-0.661;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274532    GT:AD:DP:GQ:PL    0/1:13,18:31:99:541,0,446
5    156456957    rs2134230    G    C    132.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=13.21;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:5,5:10:99:162,0,182
5    156459856    rs34670839    C    T    763.66    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.148;DB;DP=57;Dels=0.0;FS=1.053;HRun=4;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;MQRankSum=-0.803;QD=13.4;ReadPosRankSum=-0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:29,28:57:99:794,0,790
5    156464212    rs4704837    T    G    3377.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-1.291;QD=32.48;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    1/1:2,102:104:99:3378,250,0
5    156464242    rs2036402    T    C    2305.28    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.22;DB;DP=160;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.5327;MQ=59.68;MQ0=0;MQRankSum=-0.14;QD=14.32;ReadPosRankSum=1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:83,77:160:99:2335,0,2460
5    156469452    rs71741602    CAA    C    67.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=8;FS=0.0;HRun=20;HaplotypeScore=52.0203;IndelType=D;MQ=50.65;MQ0=0;MQRankSum=-0.742;QD=8.43;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    1/1:1,5:8:12.23:109,12,0
5    156469783    rs2270926    G    A    377.26    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.155;QD=13.01;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:17,12:29:99:407,0,625
5    156469808    rs13173581    C    T    275.03    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.518;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.619;QD=14.48;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:8,11:19:99:305,0,273
5    156479204    rs2279804    C    T    205.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518745    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
5    156479323    rs1553318    G    C    431.58    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=4.256;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.58;MQ0=0;MQRankSum=0.311;QD=15.98;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518745    GT:AD:DP:GQ:PL    0/1:11,16:27:99:462,0,299
5    156479424    rs1553317    A    C    4933.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=53.08;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=T207;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156479372_156479665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    1/1:0,141:141:99:4933,388,0
5    156479426    rs12522248    T    C    1524.89    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=4.418;DB;DP=152;Dels=0.0;FS=5.459;HRun=0;HaplotypeScore=1.5774;MQ=52.41;MQ0=0;MQRankSum=0.09;QD=10.03;ReadPosRankSum=0.662;SNPEFF_AMINO_ACID_CHANGE=T207A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156479372_156479665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:92,59:152:99:1555,0,2811
5    156479443    rs45439103    CTTG    C    3692.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.943;DB;DP=170;FS=3.279;HRun=0;HaplotypeScore=1601.628;IndelType=D;MQ=52.31;MQ0=0;MQRankSum=1.094;QD=21.72;ReadPosRankSum=2.262;SNPEFF_AMINO_ACID_CHANGE=TS200S;SNPEFF_CODON_CHANGE=acaagt/agt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_5_156479372_156479665;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:85,85:170:99:3692,0,4024
5    156479509    rs1553316    A    G    7233.95    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=232;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=16.4171;MQ=51.08;MQ0=0;QD=30.91;SNPEFF_AMINO_ACID_CHANGE=L179P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156479372_156479665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    1/1:0,232:232:99:7234,608,0
5    156479557    rs45623443    GTTGGAACAGTCGTCA    G    7319.01    PASS    AB=0.897;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.915;DB;DP=226;FS=5.383;HRun=0;HaplotypeScore=3574.4306;IndelType=D;MQ=49.55;MQ0=0;MQRankSum=-4.495;QD=32.38;ReadPosRankSum=-1.22;SNPEFF_AMINO_ACID_CHANGE=MTTVPT158T;SNPEFF_CODON_CHANGE=atgacgactgttccaacg/acg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_5_156479372_156479665;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:200,26:226:99:7319,0,13004
5    156479568    .    C    CGTT    10371.99    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-9.974;DP=220;FS=8.777;HRun=0;HaplotypeScore=1833.1075;IndelType=I;MQ=49.91;MQ0=0;MQRankSum=4.497;QD=47.15;ReadPosRankSum=-3.052;SNPEFF_AMINO_ACID_CHANGE=T159KP;SNPEFF_CODON_CHANGE=acg/aAACcg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_5_156479372_156479665;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:60,154:220:99:10372,0,149
5    156482459    rs1809941    G    T    1008.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=S44;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156482212_156482544;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1042,78,0
5    156482669    rs870581    G    A    98.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=14.04;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339252    GT:AD:DP:GQ:PL    0/1:3,4:7:99:128,0,103
5    156531561    rs2902306    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517358    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
5    156531736    rs1036199    C    A    419.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=R140L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156531677_156531760;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307851    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:452,33,0
5    156531865    rs1036200    A    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAVCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517358    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
5    156641045    rs30139    G    A    179.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=19.92;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520555    GT:AD:DP:GQ:PL    0/1:3,6:9:94.16:209,0,94
5    156644775    rs5872504    T    TC    554.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=26.8312;IndelType=I;MQ=61.53;MQ0=0;QD=39.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517779    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:596,42,0
5    156644939    rs246747    G    A    942.37    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.31;DB;DP=80;Dels=0.0;FS=1.89;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=0.498;QD=11.78;ReadPosRankSum=-1.862;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517779    GT:AD:DP:GQ:PL    0/1:44,36:80:99:972,0,1291
5    156664978    rs30117    C    T    88.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422843    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
5    156670916    rs66943334    C    T    178.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=14.9;ReadPosRankSum=1.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519759    GT:AD:DP:GQ:PL    0/1:6,6:12:99:209,0,207
5    156671000    rs34099004    C    T    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519759    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    156679576    rs27341    T    C    888.22    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.256;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.135;QD=20.19;ReadPosRankSum=-0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422843    GT:AD:DP:GQ:PL    0/1:16,28:44:99:918,0,491
5    156721863    rs76159126    T    TC    713.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=3;HaplotypeScore=53.6526;IndelType=I;MQ=60.49;MQ0=0;QD=32.44;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_156721792_156721868;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000318218    GT:AD:DP:GQ:PL    1/1:5,17:22:54.18:756,54,0
5    156721986    rs7724099    C    A    91.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.2;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318218    GT:AD:DP:GQ:PL    0/1:2,4:6:60.21:121,0,60
5    156728067    rs454603    T    C    67.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.4;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520419    GT:AD:DP:GQ:PL    0/1:4,4:8:97.16:97,0,127
5    156734632    rs529619    G    A    46.10    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.64;MQ0=0;MQRankSum=-2.166;QD=4.61;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517850    GT:AD:DP:GQ:PL    0/1:7,3:10:76.09:76,0,242
5    156736617    rs151185381    G    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519002    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:74,0,28
5    156738830    rs393178    G    C    142.72    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=12.97;ReadPosRankSum=1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519252    GT:AD:DP:GQ:PL    0/1:5,6:11:99:173,0,176
5    156741583    rs895309    A    G    259.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.884;QD=17.28;ReadPosRankSum=-1.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520942    GT:AD:DP:GQ:PL    0/1:6,9:15:99:289,0,163
5    156742186    rs6897056    G    A    289.21    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.884;DB;DP=23;Dels=0.0;FS=9.81;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.899;QD=12.57;ReadPosRankSum=0.341;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520942    GT:AD:DP:GQ:PL    0/1:13,10:23:99:319,0,404
5    156747584    rs7730231    C    T    93.61    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.509;QD=4.93;ReadPosRankSum=-0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318218    GT:AD:DP:GQ:PL    0/1:14,5:19:99:124,0,469
5    156747614    rs6555939    G    T    83.84    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=29;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=3.9816;MQ=59.2;MQ0=0;MQRankSum=0.26;QD=2.89;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318218    GT:AD:DP:GQ:PL    0/1:24,5:29:99:114,0,665
5    156747632    rs2863198    C    G    163.09    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.09;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.74;MQ0=0;MQRankSum=0.901;QD=4.41;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318218    GT:AD:DP:GQ:PL    0/1:27,10:37:99:193,0,890
5    156747669    rs1823035    A    G    507.45    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.81;DB;DP=50;Dels=0.0;FS=1.182;HRun=0;HaplotypeScore=0.5784;MQ=59.07;MQ0=0;MQRankSum=1.296;QD=10.15;ReadPosRankSum=1.939;SNPEFF_AMINO_ACID_CHANGE=L184;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156747663_156747810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435847    GT:AD:DP:GQ:PL    0/1:32,18:50:99:537,0,955
5    156760214    rs13181919    C    G    258.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.128;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.25;MQ0=0;MQRankSum=1.142;QD=10.33;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318218    GT:AD:DP:GQ:PL    0/1:10,15:25:99:288,0,352
5    156765981    rs3734026    G    A    57.05    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.254;QD=4.39;ReadPosRankSum=0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312349    GT:AD:DP:GQ:PL    0/1:10,3:13:87.05:87,0,321
5    156766037    rs3734027    A    G    243.96    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.602;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.992;QD=7.62;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312349    GT:AD:DP:GQ:PL    0/1:21,11:32:99:274,0,776
5    156766273    rs3734028    G    A    1220.16    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.486;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4224;MQ=58.92;MQ0=0;MQRankSum=-1.05;QD=14.19;ReadPosRankSum=0.746;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312349    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1250,0,1438
5    156770133    rs10037485    C    T    913.14    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.591;DB;DP=55;Dels=0.0;FS=8.647;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.082;QD=16.6;ReadPosRankSum=-1.409;SNPEFF_AMINO_ACID_CHANGE=V138I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156768608_156770551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312349    GT:AD:DP:GQ:PL    0/1:21,34:55:99:943,0,629
5    156770653    rs13182147    G    A    32.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.17;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520424    GT:AD:DP:GQ:PL    0/1:2,2:4:62.67:63,0,69
5    156803746    rs146807661    AGCACCCACTTATGCAAACCTT    A    1674.26    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=4.563;DB;DP=38;FS=4.27;HRun=0;HaplotypeScore=616.4414;IndelType=D;MQ=50.45;MQ0=0;MQRankSum=-3.769;QD=44.06;ReadPosRankSum=2.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318218    GT:AD:DP:GQ:PL    0/1:28,10:38:99:1713,0,5531
5    156811673    rs112263751    C    G    149.89    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=20;Dels=0.0;FS=2.884;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=7.49;ReadPosRankSum=-0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522892    GT:AD:DP:GQ:PL    0/1:13,7:20:99:180,0,304
5    156811732    rs111663740    C    T    193.35    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=17.58;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522892    GT:AD:DP:GQ:PL    0/1:4,7:11:99:223,0,134
5    156819669    rs12518740    C    T    330.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.379;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.328;QD=15.03;ReadPosRankSum=-0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430702    GT:AD:DP:GQ:PL    0/1:11,11:22:99:361,0,387
5    156898899    rs4704869    G    A    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519946    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
5    156899869    rs4704870    T    C    3863.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=V415;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156899340_156900108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435489    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3863,286,0
5    156932954    rs11134775    G    C    71.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.88;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257527    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,107
5    156932984    rs10078178    A    T    42.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.69;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257527    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:73,0,32
5    156936364    rs1422795    T    C    218.78    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.735;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.102;QD=10.94;ReadPosRankSum=-1.184;SNPEFF_AMINO_ACID_CHANGE=S17G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_156936309_156936475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430702    GT:AD:DP:GQ:PL    0/1:11,9:20:99:249,0,330
5    156945634    rs10866660    C    T    87.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.429;QD=5.85;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257527    GT:AD:DP:GQ:PL    0/1:10,5:15:99:118,0,368
5    156946049    rs2042247    A    G    178.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=17.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257527    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,135
5    156957741    rs3822696    C    T    184    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.788;QD=15.33;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257527    GT:AD:DP:GQ:PL    0/1:5,7:12:99:214,0,174
5    156991508    rs11134819    G    A    379.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.023;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=13.54;ReadPosRankSum=0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257527    GT:AD:DP:GQ:PL    0/1:14,14:28:99:409,0,460
5    156997785    rs11746737    C    T    33.02    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.72;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257527    GT:AD:DP:GQ:PL    0/1:5,2:7:63.01:63,0,153
5    157075445    rs7713029    G    C    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265007    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
5    157075943    rs149286353    TAC    T    462.70    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=4.561;DB;DP=54;FS=0.0;HRun=0;HaplotypeScore=181.9878;IndelType=D;MQ=59.86;MQ0=0;MQRankSum=1.589;QD=8.57;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265007    GT:AD:DP:GQ:PL    0/1:37,17:54:99:502,0,1098
5    157078402    rs41275269    C    T    920.27    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=64;Dels=0.0;FS=5.997;HRun=1;HaplotypeScore=1.4725;MQ=58.83;MQ0=0;MQRankSum=-0.685;QD=14.38;ReadPosRankSum=0.353;SNPEFF_AMINO_ACID_CHANGE=E229K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_157078120_157079428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265007    GT:AD:DP:GQ:PL    0/1:28,36:64:99:950,0,892
5    157098446    rs11134885    A    G    34.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.99;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409999    GT:AD:DP:GQ:PL    0/1:3,2:5:54.77:65,0,55
5    157102063    rs10051782    G    A    740.67    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=4.033;DB;DP=48;Dels=0.0;FS=8.648;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.819;QD=15.43;ReadPosRankSum=1.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409999    GT:AD:DP:GQ:PL    0/1:25,23:48:99:771,0,668
5    157102159    rs10051838    G    A    1503.13    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=4.257;DB;DP=79;Dels=0.0;FS=4.462;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.868;QD=19.03;ReadPosRankSum=0.58;SNPEFF_AMINO_ACID_CHANGE=R91Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_157102100_157102208;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409999    GT:AD:DP:GQ:PL    0/1:31,48:79:99:1533,0,889
5    157102185    rs6884959    A    G    1215.37    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.388;DB;DP=83;Dels=0.0;FS=3.013;HRun=0;HaplotypeScore=0.9665;MQ=59.44;MQ0=0;MQRankSum=-0.294;QD=14.64;ReadPosRankSum=0.21;SNPEFF_AMINO_ACID_CHANGE=T100A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_157102100_157102208;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409999    GT:AD:DP:GQ:PL    0/1:37,46:83:99:1245,0,1073
5    157106785    rs6556177    C    T    122.21    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=8.73;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409999    GT:AD:DP:GQ:PL    0/1:9,5:14:99:152,0,302
5    157117118    rs62387715    G    A    505.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=28;Dels=0.0;FS=3.969;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.534;QD=18.07;ReadPosRankSum=-0.023;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC008694.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522076    GT:AD:DP:GQ:PL    0/1:12,16:28:99:536,0,420
5    157158414    rs2270819    C    A    53.98    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.4;ReadPosRankSum=-0.895;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448153    GT:AD:DP:GQ:PL    0/1:7,3:10:83.97:84,0,212
5    157158439    rs2270818    C    A    194.75    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=16;Dels=0.0;FS=6.726;HRun=0;HaplotypeScore=0.9894;MQ=58.55;MQ0=0;MQRankSum=1.27;QD=12.17;ReadPosRankSum=-0.212;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448153    GT:AD:DP:GQ:PL    0/1:9,7:16:99:225,0,268
5    157178592    rs67904250    TA    T    2333.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.0;HRun=2;HaplotypeScore=160.9256;IndelType=D;MQ=60.15;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286307    GT:AD:DP:GQ:PL    1/1:3,61:64:99:2376,184,0
5    157214762    .    C    G    1792.36    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.772;DP=176;DS;Dels=0.0;FS=12.728;HRun=0;HaplotypeScore=12.3221;MQ=57.19;MQ0=0;MQRankSum=-1.409;QD=10.18;ReadPosRankSum=-0.574;SNPEFF_AMINO_ACID_CHANGE=M590I;SNPEFF_CODON_CHANGE=atG/atC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_157213297_157215000;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLINT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296951    GT:AD:DP:GQ:PL    0/1:95,81:176:99:1822,0,3121
5    157285728    rs6894904    G    A    79.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.01;MQ0=0;QD=26.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLINT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
5    158140222    rs3734105    G    A    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.91;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313708    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,142
5    158204425    rs1368298    A    G    973.72    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.73;DB;DP=79;Dels=0.0;FS=0.863;HRun=0;HaplotypeScore=2.0756;MQ=59.47;MQ0=0;MQRankSum=0.444;QD=12.33;ReadPosRankSum=1.302;SNPEFF_AMINO_ACID_CHANGE=Y313;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_158204421_158204547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380654    GT:AD:DP:GQ:PL    0/1:41,37:79:99:1004,0,1294
5    158296996    rs2072495    C    T    855.25    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=59;Dels=0.0;FS=1.008;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.918;QD=14.5;ReadPosRankSum=-1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313708    GT:AD:DP:GQ:PL    0/1:28,31:59:99:885,0,931
5    158522577    rs12659540    C    A    745.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313708    GT:AD:DP:GQ:PL    1/1:0,24:24:57.19:779,57,0
5    158526270    rs10537975    AGCTGCC    A    583.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=116.7739;IndelType=D;MQ=43.47;MQ0=0;QD=44.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313708    GT:AD:DP:GQ:PL    1/1:2,11:13:30.10:625,30,0
5    158526534    rs5872586    TA    T    632.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.455;DB;DP=77;FS=1.741;HRun=15;HaplotypeScore=304.5953;IndelType=D;MQ=56.59;MQ0=0;MQRankSum=-0.131;QD=8.11;ReadPosRankSum=-1.768;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518836    GT:AD:DP:GQ:PL    0/1:26,47:77:76.73:672,0,77
5    158588633    rs113612413    GAAAAA    G    196.43    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=20;FS=9.425;HRun=15;HaplotypeScore=126.9392;IndelType=D;MQ=52.65;MQ0=0;MQRankSum=-0.796;QD=9.82;ReadPosRankSum=1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274542    GT:AD:DP:GQ:PL    0/1:14,6:20:99:235,0,847
5    158589898    rs2304056    C    G    351.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=21;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=0.8321;MQ=58.89;MQ0=0;MQRankSum=-0.462;QD=16.76;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274542    GT:AD:DP:GQ:PL    0/1:9,12:21:99:382,0,279
5    158603571    rs1473247    T    C    313.97    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.694;QD=16.52;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274542    GT:AD:DP:GQ:PL    0/1:9,10:19:99:344,0,319
5    158697481    rs3734104    C    G    861.12    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=69;Dels=0.0;FS=2.021;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.395;QD=12.48;ReadPosRankSum=1.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBLCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296786    GT:AD:DP:GQ:PL    0/1:40,29:69:99:891,0,1391
5    158710419    rs1433046    C    T    432.32    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.189;DB;DP=32;Dels=0.0;FS=6.463;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=13.51;ReadPosRankSum=1.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBLCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296786    GT:AD:DP:GQ:PL    0/1:17,15:32:99:462,0,574
5    158750013    rs2288831    T    C    351.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.359;DB;DP=26;Dels=0.0;FS=1.906;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.641;QD=13.53;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231228    GT:AD:DP:GQ:PL    0/1:13,13:26:99:382,0,430
5    159478089    rs141172195    GT    G    195.19    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=45;FS=0.0;HRun=16;HaplotypeScore=281.7507;IndelType=D;MQ=54.96;MQ0=0;MQRankSum=1.331;QD=4.34;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231238    GT:AD:DP:GQ:PL    0/1:20,21:45:99:234,0,300
5    159491520    rs1106055    A    G    210.18    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=5.18;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=11.06;ReadPosRankSum=-1.919;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PWWP2A;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,10:19:99:240,0,317
5    159507645    .    A    T    887.99    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.182;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=13.25;ReadPosRankSum=-0.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PWWP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456329    GT:AD:DP:GQ:PL    0/1:34,33:67:99:918,0,1026
5    159507928    rs4244405    G    A    30.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=10.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PWWP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456329    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:61,0,34
5    159521237    rs2546964    T    C    130.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PWWP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307063    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
5    159640652    rs6556482    G    A    657.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393980    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:691,54,0
5    159661754    rs60865693    C    T    44.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=5.56;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393980    GT:AD:DP:GQ:PL    0/1:5,3:8:74.45:74,0,184
5    159662126    rs4244409    A    G    123.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393980    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
5    159665485    rs10056214    G    C    243.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393980    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
5    159665523    rs10071756    C    T    362.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393980    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:395,33,0
5    159665527    rs10056227    G    A    326.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=23.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393980    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:359,30,0
5    159665534    rs10079413    A    G    411.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.92;MQ0=0;QD=25.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393980    GT:AD:DP:GQ:PL    1/1:0,16:16:36.09:444,36,0
5    159665599    rs2277954    G    A    1146.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393980    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1179,90,0
5    159665726    rs10071871    C    T    772.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402432    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:805,60,0
5    159665733    rs2277953    C    T    628.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393982    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:661,51,0
5    159738709    rs6556490    A    G    70.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.03;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNJL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257536    GT:AD:DP:GQ:PL    0/1:2,3:5:63.69:100,0,64
5    159766380    rs61666605    A    AC    172.21    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=3.518;DB;DP=54;FS=0.0;HRun=1;HaplotypeScore=319.0528;IndelType=I;MQ=58.58;MQ0=0;MQRankSum=0.877;QD=3.19;ReadPosRankSum=-1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNJL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521643    GT:AD:DP:GQ:PL    0/1:37,16:54:99:211,0,1037
5    159776047    rs9216    A    G    86.45    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.387;QD=7.86;ReadPosRankSum=-1.186;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNJL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521643    GT:AD:DP:GQ:PL    0/1:5,6:11:99:116,0,173
5    159776637    rs10053189    C    T    1129.82    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=74;Dels=0.0;FS=3.329;HRun=2;HaplotypeScore=0.8667;MQ=59.56;MQ0=0;MQRankSum=0.677;QD=15.27;ReadPosRankSum=-1.458;SNPEFF_AMINO_ACID_CHANGE=K177;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_159774758_159776788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393975    GT:AD:DP:GQ:PL    0/1:30,44:74:99:1160,0,729
5    159831664    rs2961939    C    T    118.61    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=16.94;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520841    GT:AD:DP:GQ:PL    0/1:2,5:7:46.71:149,0,47
5    159831803    rs2961940    A    G    424.43    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.657;DB;DP=35;Dels=0.0;FS=6.412;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.545;QD=12.13;ReadPosRankSum=-1.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520841    GT:AD:DP:GQ:PL    0/1:18,17:35:99:454,0,599
5    159833878    rs2961942    C    G    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297151    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    159834330    rs10639397    T    TTGTA    459.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=17.5165;IndelType=I;MQ=41.96;MQ0=0;QD=76.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297151    GT:AD:DP:GQ:PL    1/1:1,5:6:18.06:501,18,0
5    159835173    rs2910186    G    A    173.08    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.523;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.23;MQ0=0;MQRankSum=0.053;QD=10.18;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297151    GT:AD:DP:GQ:PL    0/1:9,8:17:99:203,0,272
5    159835658    rs2961944    A    G    2086.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.98;SNPEFF_AMINO_ACID_CHANGE=M229T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_159835657_159835704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297151    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2120,165,0
5    159839211    rs2069277    T    C    33.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518268    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
5    159839317    rs1579074    T    C    101.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=12.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518268    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,133
5    159839530    rs57812151    T    TAAAAA    1287.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=14;HaplotypeScore=327.3474;IndelType=I;MQ=43.29;MQ0=0;QD=39.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518268    GT:AD:DP:GQ:PL    1/1:18,9:33:66.21:1329,66,0
5    159840339    .    G    GTAC    1044.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DP=19;FS=0.0;HRun=0;HaplotypeScore=52.5885;IndelType=I;MQ=55.15;MQ0=0;MQRankSum=0.091;QD=54.95;ReadPosRankSum=-1.187;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518268    GT:AD:DP:GQ:PL    1/1:1,17:19:10.75:1085,11,0
5    159840688    rs2961949    T    C    806.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518268    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:840,63,0
5    159840700    rs12522744    A    C    402.82    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.856;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.444;QD=18.31;ReadPosRankSum=1.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518268    GT:AD:DP:GQ:PL    0/1:8,14:22:99:433,0,267
5    159842465    rs2910190    A    G    217.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297151    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
5    159849586    rs1895320    A    G    215.58    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=16.58;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352433    GT:AD:DP:GQ:PL    0/1:6,7:13:99:246,0,203
5    159849991    rs2910200    C    T    286.51    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.043;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=11.94;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352433    GT:AD:DP:GQ:PL    0/1:13,11:24:99:317,0,461
5    159851211    rs2910203    G    C    2253.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=1.562;QD=36.34;ReadPosRankSum=-1.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524244    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2286,163,0
5    159855760    .    T    TG    858.76    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.574;DP=43;FS=0.0;HRun=1;HaplotypeScore=90.481;IndelType=I;MQ=60.25;MQ0=0;MQRankSum=1.036;QD=19.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352433    GT:AD:DP:GQ:PL    0/1:20,23:43:99:898,0,614
5    159912418    rs2910164    C    G    771.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTC-231O11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517927    GT:AD:DP:GQ:PL    1/1:0,26:27:60.16:805,60,0
5    159992655    rs3812005    T    C    742.88    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.813;DB;DP=63;Dels=0.0;FS=0.972;HRun=0;HaplotypeScore=0.8667;MQ=59.27;MQ0=0;MQRankSum=0.426;QD=11.79;ReadPosRankSum=0.9;SNPEFF_AMINO_ACID_CHANGE=V1397;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_159990127_159992907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:37,26:63:99:773,0,1251
5    159992754    rs3812006    T    G    938.39    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.643;DB;DP=101;Dels=0.0;FS=2.214;HRun=2;HaplotypeScore=5.7188;MQ=58.2;MQ0=0;MQRankSum=0.971;QD=9.29;ReadPosRankSum=0.758;SNPEFF_AMINO_ACID_CHANGE=P1364;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_159990127_159992907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:55,46:101:99:968,0,1511
5    160018018    .    AGTT    A    188.42    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=3.667;DP=28;FS=0.0;HRun=0;HaplotypeScore=189.8321;IndelType=D;MQ=54.85;MQ0=0;MQRankSum=-3.723;QD=6.73;ReadPosRankSum=-0.924;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:22,6:28:99:227,0,1569
5    160018026    .    TCTGC    T    223.83    PASS    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=3.966;DP=32;FS=4.032;HRun=0;HaplotypeScore=228.9194;IndelType=D;MQ=54.74;MQ0=0;MQRankSum=-4.011;QD=6.99;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:26,6:32:99:263,0,2025
5    160044855    rs1363199    G    A    641.98    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=40;Dels=0.0;FS=2.151;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.944;QD=16.05;ReadPosRankSum=0.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:18,22:40:99:672,0,561
5    160047265    rs6862674    C    G    348.64    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=25;Dels=0.0;FS=7.005;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=13.95;ReadPosRankSum=-0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:12,13:25:99:379,0,334
5    160049355    rs2032804    C    T    91.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=13.13;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:3,4:7:99:122,0,101
5    160063134    rs34471074    G    A    642.80    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.419;DB;DP=45;Dels=0.0;FS=5.472;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.647;QD=14.28;ReadPosRankSum=-1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:23,22:45:99:673,0,666
5    160097429    rs3828604    T    C    979.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.161;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.327;QD=13.61;ReadPosRankSum=-1.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1010,0,1151
5    160097453    rs1990888    A    C    1070.32    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=4.063;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=13.21;ReadPosRankSum=-1.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:44,37:81:99:1100,0,1401
5    160097632    rs958911    G    A    701.99    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.033;QD=9.89;ReadPosRankSum=-0.434;SNPEFF_AMINO_ACID_CHANGE=R171;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_160097470_160097674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327245    GT:AD:DP:GQ:PL    0/1:43,28:71:99:732,0,1181
5    160657141    rs248357    C    G    818.78    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=70;Dels=0.0;FS=0.952;HRun=0;HaplotypeScore=2.3001;MQ=59.67;MQ0=0;MQRankSum=0.065;QD=11.7;ReadPosRankSum=-0.383;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC022120.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408075    GT:AD:DP:GQ:PL    0/1:38,32:70:99:849,0,1156
5    160763787    rs10052441    A    G    206.08    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=2.922;DB;DP=41;Dels=0.0;FS=2.299;HRun=2;HaplotypeScore=2.6927;MQ=54.85;MQ0=0;MQRankSum=-0.119;QD=5.03;ReadPosRankSum=2.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274547    GT:AD:DP:GQ:PL    0/1:23,17:41:99:236,0,531
5    160763821    .    C    CA    198.98    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DP=30;FS=0.0;HRun=13;HaplotypeScore=351.3107;IndelType=I;MQ=50.89;MQ0=0;MQRankSum=-0.579;QD=6.63;ReadPosRankSum=-1.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274547    GT:AD:DP:GQ:PL    0/1:20,10:30:99:238,0,140
5    160763856    rs10074714    C    T    133.28    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.32;MQ0=0;MQRankSum=-0.05;QD=7.84;ReadPosRankSum=-1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274547    GT:AD:DP:GQ:PL    0/1:11,6:17:99:163,0,271
5    161113004    rs13188991    G    A    548.79    PASS    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=25;Dels=0.0;FS=6.956;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.272;QD=21.95;ReadPosRankSum=-1.785;SNPEFF_AMINO_ACID_CHANGE=S3;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_161112563_161113033;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274545    GT:AD:DP:GQ:PL    0/1:7,18:25:99:579,0,208
5    161115889    rs12515485    C    T    243.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=15.22;ReadPosRankSum=1.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518888    GT:AD:DP:GQ:PL    0/1:8,8:16:99:274,0,281
5    161116903    rs4921402    C    A    323.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518888    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
5    161116942    rs3811992    A    G    66.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518888    GT:AD:DP:GQ:PL    0/1:2,3:5:68.47:97,0,68
5    161119071    rs12522663    G    T    3105.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.21;MQ0=0;QD=35.29;SNPEFF_AMINO_ACID_CHANGE=A307;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_161118947_161119206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523217    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3139,232,0
5    161119125    rs13184586    C    G    912.80    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.943;DB;DP=67;Dels=0.0;FS=6.73;HRun=0;HaplotypeScore=1.8633;MQ=59.03;MQ0=0;MQRankSum=0.378;QD=13.62;ReadPosRankSum=-0.789;SNPEFF_AMINO_ACID_CHANGE=A325;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_161118947_161119206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523217    GT:AD:DP:GQ:PL    0/1:35,32:67:99:943,0,1054
5    161128409    rs3811991    A    C    294.54    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.049;QD=17.33;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274545    GT:AD:DP:GQ:PL    0/1:7,10:17:99:325,0,226
5    161128761    rs4277944    C    G    1689.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.55;MQ0=0;QD=33.12;SNPEFF_AMINO_ACID_CHANGE=V438;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_161128504_161129598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523217    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1722,126,0
5    161128914    rs3219151    C    T    108.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.02;ReadPosRankSum=0.876;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GABRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521520    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,150
5    161299902    rs78679936    A    G    40.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.07;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023897    GT:AD:DP:GQ:PL    0/1:2,2:4:33.62:70,0,34
5    161317770    rs1026447    C    T    255.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=23.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023897    GT:AD:DP:GQ:PL    1/1:0,11:11:24.07:289,24,0
5    161322889    rs2279020    G    A    1393.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519542    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1427,102,0
5    161494852    rs3219203    C    T    133.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.322;QD=16.68;ReadPosRankSum=0.322;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393933    GT:AD:DP:GQ:PL    0/1:3,5:8:99:163,0,104
5    161522318    rs2963170    G    A    123.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356592    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
5    161525053    rs76029468    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356592    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    161528280    rs211037    C    T    774.75    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=2.318;DB;DP=55;Dels=0.0;FS=3.743;HRun=3;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.228;QD=14.09;ReadPosRankSum=0.582;SNPEFF_AMINO_ACID_CHANGE=N101;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_161528241_161528323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393933    GT:AD:DP:GQ:PL    0/1:29,26:55:99:805,0,858
5    161530735    rs211030    C    T    111.78    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=15.97;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356592    GT:AD:DP:GQ:PL    0/1:3,4:7:99:142,0,106
5    161576418    rs211014    C    A    123.71    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.212;DB;DP=17;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.685;QD=7.28;ReadPosRankSum=-0.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522053    GT:AD:DP:GQ:PL    0/1:12,5:17:99:154,0,442
5    161579441    rs211013    A    G    1538.95    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=5.924;DB;DP=135;Dels=0.0;FS=2.214;HRun=2;HaplotypeScore=2.6609;MQ=59.45;MQ0=0;MQRankSum=-1.201;QD=11.4;ReadPosRankSum=0.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522053    GT:AD:DP:GQ:PL    0/1:71,64:135:99:1569,0,2158
5    162866548    rs299322    T    C    853.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340828    GT:AD:DP:GQ:PL    1/1:0,30:30:72.22:886,72,0
5    162866616    rs75125861    T    TG    410.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=40.5041;IndelType=I;MQ=60.98;MQ0=0;QD=37.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506186    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
5    162884145    rs34746227    G    GTT    221.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=137.7915;IndelType=I;MQ=50.15;MQ0=0;QD=15.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302764    GT:AD:DP:GQ:PL    1/1:5,5:14:25.92:263,26,0
5    162890953    rs380101    G    A    249.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_AMINO_ACID_CHANGE=Q46;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162890862_162890960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:283,21,0
5    162896650    rs299284    C    T    813.56    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=2.167;DB;DP=51;Dels=0.0;FS=2.447;HRun=2;HaplotypeScore=2.8318;MQ=59.55;MQ0=0;MQRankSum=-0.312;QD=15.95;ReadPosRankSum=-0.237;SNPEFF_AMINO_ACID_CHANGE=R6C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162896647_162896835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432118    GT:AD:DP:GQ:PL    0/1:23,28:51:99:844,0,599
5    162896856    rs299283    T    C    338.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521108    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:372,27,0
5    162898565    rs169920    G    C    195.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517936    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:228,18,0
5    162902516    rs299290    T    C    1627.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=35.38;SNPEFF_AMINO_ACID_CHANGE=V254A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162902464_162902678;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416990    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1661,126,0
5    162902707    rs299291    G    A    657.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434157    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:691,51,0
5    162909716    rs299295    C    T    497.35    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.426;DB;DP=52;Dels=0.0;FS=6.133;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.861;QD=9.56;ReadPosRankSum=0.802;SNPEFF_AMINO_ACID_CHANGE=A370V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162909648_162909794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416990    GT:AD:DP:GQ:PL    0/1:30,22:52:99:527,0,933
5    162909955    rs5872824    AG    A    881.40    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=5.566;DB;DP=60;FS=10.676;HRun=1;HaplotypeScore=199.8503;IndelType=D;MQ=60.5;MQ0=0;MQRankSum=-1.249;QD=14.69;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    0/1:34,26:60:99:920,0,984
5    162910199    rs184181    G    C    1106.30    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.043;DB;DP=68;Dels=0.0;FS=4.877;HRun=0;HaplotypeScore=1.7803;MQ=59.32;MQ0=0;MQRankSum=-1.603;QD=16.27;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    0/1:32,36:68:99:1136,0,1002
5    162910438    rs299308    G    A    955.96    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.006;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.6;MQ0=0;MQRankSum=0.28;QD=16.77;ReadPosRankSum=-0.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    0/1:27,30:57:99:986,0,922
5    162910586    rs299309    A    G    38.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.41;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    0/1:3,3:6:68.47:68,0,103
5    162910927    rs299311    A    G    190.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:223,18,0
5    162911075    rs2230363    C    A    579.52    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.131;DB;DP=41;Dels=0.0;FS=4.533;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=14.13;ReadPosRankSum=-1.32;SNPEFF_AMINO_ACID_CHANGE=L481I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162911075_162911251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416990    GT:AD:DP:GQ:PL    0/1:19,22:41:99:610,0,614
5    162917708    rs10515860    G    A    152.08    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=8.95;ReadPosRankSum=0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    0/1:11,6:17:99:182,0,396
5    162917734    rs299319    T    C    204.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
5    162917978    rs299320    T    A    315.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMMR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353866    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:348,27,0
5    162940739    rs964945    G    A    1784.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519719    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1818,147,0
5    162940999    rs17061795    A    G    701.64    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.5;MQ0=0;MQRankSum=0.825;QD=15.25;ReadPosRankSum=0.715;SNPEFF_AMINO_ACID_CHANGE=L110;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_162940848_162941000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAT2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421814    GT:AD:DP:GQ:PL    0/1:22,24:46:99:732,0,709
5    162944709    rs7733775    A    G    541.66    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=33;Dels=0.0;FS=2.21;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=16.41;ReadPosRankSum=-0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421814    GT:AD:DP:GQ:PL    0/1:17,16:33:99:572,0,488
5    162945387    .    CT    C    166.41    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DP=34;FS=0.0;HRun=12;HaplotypeScore=115.8919;IndelType=D;MQ=58.96;MQ0=0;MQRankSum=0.327;QD=4.89;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421814    GT:AD:DP:GQ:PL    0/1:20,12:34:99:205,0,368
5    167182055    rs1862875    G    A    4535.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.83;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518659    GT:AD:DP:GQ:PL    1/1:1,133:135:99:4535,340,0
5    167302880    rs140023943    CT    C    72.94    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=14;FS=0.0;HRun=15;HaplotypeScore=90.2341;IndelType=D;MQ=59.13;MQ0=0;MQRankSum=-0.627;QD=5.21;ReadPosRankSum=-1.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518659    GT:AD:DP:GQ:PL    0/1:4,8:14:92.53:112,0,93
5    167420255    rs17069526    T    A    466.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520393    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:499,39,0
5    167420296    rs11955430    T    G    151.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520393    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
5    167489049    rs11411759    CT    C    306.23    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=40;FS=0.0;HRun=12;HaplotypeScore=158.4215;IndelType=D;MQ=59.66;MQ0=0;MQRankSum=0.055;QD=7.66;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    0/1:19,20:40:99:345,0,295
5    167517505    rs2053049    C    G    987.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1021,81,0
5    167525319    rs145526184    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:74,0,28
5    167566600    rs1432822    T    A    1683.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4338;MQ=58.35;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1717,126,0
5    167576513    rs35438448    T    TG    587.76    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.617;DB;DP=31;FS=0.0;HRun=1;HaplotypeScore=74.4131;IndelType=I;MQ=59.25;MQ0=0;MQRankSum=0.257;QD=18.96;ReadPosRankSum=0.494;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    0/1:16,15:31:99:627,0,571
5    167625581    rs34571245    C    A    76.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
5    167625657    rs34187866    G    C    299.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:333,24,0
5    167625771    rs1874460    G    C    1996.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2029,153,0
5    167626142    rs2291784    G    A    627.48    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.595;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.087;QD=23.24;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    0/1:6,21:27:99:657,0,183
5    167626696    rs3797719    A    G    636    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:669,54,0
5    167631884    rs6887745    A    G    77.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
5    167643545    rs6885116    A    G    65.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.02;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:95,0,67
5    167645888    rs1363560    T    C    5541.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.43;MQ0=0;QD=34.0;SNPEFF_AMINO_ACID_CHANGE=N1425;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_167645130_167646004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520394    GT:AD:DP:GQ:PL    1/1:0,163:163:99:5542,424,0
5    167653364    rs3733985    T    C    830.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:864,69,0
5    167653394    rs3733986    A    G    707.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=39.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:740,54,0
5    167654983    rs139130485    A    G    1467.50    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.14;DB;DP=100;Dels=0.0;FS=4.982;HRun=1;HaplotypeScore=0.9332;MQ=59.31;MQ0=0;MQRankSum=0.018;QD=14.67;ReadPosRankSum=-1.421;SNPEFF_AMINO_ACID_CHANGE=S1551G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_167654900_167655135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000520394    GT:AD:DP:GQ:PL    0/1:46,54:100:99:1497,0,1433
5    167674370    rs3733988    C    T    2125.31    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.096;DB;DP=160;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.408;MQ=59.86;MQ0=0;MQRankSum=1.135;QD=13.28;ReadPosRankSum=-0.359;SNPEFF_AMINO_ACID_CHANGE=I1903;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_167673762_167675376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520394    GT:AD:DP:GQ:PL    0/1:85,75:160:99:2155,0,2751
5    167687440    rs114607564    G    T    2236.81    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.214;DB;DP=157;Dels=0.0;FS=14.255;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.599;QD=14.25;ReadPosRankSum=0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403607    GT:AD:DP:GQ:PL    0/1:81,76:157:99:2267,0,2467
5    167689404    rs17070041    C    T    285.61    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=21;Dels=0.0;FS=1.808;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.88;QD=13.6;ReadPosRankSum=-2.007;SNPEFF_AMINO_ACID_CHANGE=I2399;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_167689054_167690190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520394    GT:AD:DP:GQ:PL    0/1:10,11:21:99:316,0,260
5    167798585    rs2287703    C    T    472.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265293    GT:AD:DP:GQ:PL    1/1:0,19:19:39.12:506,39,0
5    167824840    rs10064053    T    C    452.45    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=54;Dels=0.0;FS=13.035;HRun=0;HaplotypeScore=0.8667;MQ=59.57;MQ0=0;MQRankSum=0.413;QD=8.38;ReadPosRankSum=0.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519859    GT:AD:DP:GQ:PL    0/1:33,21:54:99:482,0,1061
5    167833158    rs112937612    C    T    790.84    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.03;DB;DP=61;Dels=0.0;FS=4.375;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.547;QD=12.96;ReadPosRankSum=-0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265293    GT:AD:DP:GQ:PL    0/1:32,29:61:99:821,0,1043
5    167835390    rs2241368    A    G    130.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=13.03;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265293    GT:AD:DP:GQ:PL    0/1:4,6:10:99:160,0,134
5    167835766    rs6887919    T    C    427.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.539;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.913;QD=14.25;ReadPosRankSum=-0.622;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523043    GT:AD:DP:GQ:PL    0/1:15,15:30:99:458,0,528
5    167850748    rs12054944    A    G    1369.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=30.43;SNPEFF_AMINO_ACID_CHANGE=S495;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_167850538_167851073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265293    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1402,111,0
5    167851168    rs4976606    A    G    116.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517425    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
5    167855568    rs3733982    T    A    50.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518334    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:83,9,0
5    167868779    rs3733981    A    G    784.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.29;MQ0=0;QD=24.5;SNPEFF_AMINO_ACID_CHANGE=K117;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_167868687_167868839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524038    GT:AD:DP:GQ:PL    1/1:0,32:32:63.20:817,63,0
5    167868809    rs3733980    C    T    646.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=28.12;SNPEFF_AMINO_ACID_CHANGE=V127;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_167868687_167868839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524038    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:680,51,0
5    167868930    rs3948557    G    A    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265293    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
5    167894741    rs3816545    G    T    255.03    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=25.5;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265293    GT:AD:DP:GQ:PL    0/1:2,8:10:40.78:285,0,41
5    167895000    .    C    T    513.77    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.014;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.11;MQ0=0;MQRankSum=1.077;QD=13.89;ReadPosRankSum=1.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522140    GT:AD:DP:GQ:PL    0/1:19,18:37:99:544,0,477
5    167895953    rs17731898    T    C    599.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.713;DB;DP=48;Dels=0.0;FS=4.452;HRun=0;HaplotypeScore=0.5784;MQ=59.22;MQ0=0;MQRankSum=0.819;QD=12.49;ReadPosRankSum=0.713;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522140    GT:AD:DP:GQ:PL    0/1:24,24:48:99:630,0,749
5    167919623    rs184957    T    A    351.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.884;DB;DP=30;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.249;QD=11.72;ReadPosRankSum=-0.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231572    GT:AD:DP:GQ:PL    0/1:18,12:30:99:382,0,644
5    167920069    rs3756602    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231572    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    167921047    rs2432642    C    G    238.23    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=23.82;ReadPosRankSum=-1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521329    GT:AD:DP:GQ:PL    0/1:2,8:10:58.20:268,0,58
5    167943827    rs653568    G    A    1541.37    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=3.882;DB;DP=112;Dels=0.0;FS=9.161;HRun=0;HaplotypeScore=4.6562;MQ=59.38;MQ0=0;MQRankSum=0.009;QD=13.76;ReadPosRankSum=0.269;SNPEFF_AMINO_ACID_CHANGE=A293;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_167943783_167943955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538719    GT:AD:DP:GQ:PL    0/1:58,54:112:99:1571,0,1573
5    167957055    rs12654410    G    A    208.99    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.868;QD=13.93;ReadPosRankSum=-0.752;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FBLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338333    GT:AD:DP:GQ:PL    0/1:8,7:15:99:239,0,227
5    167957554    rs3733977    G    A    279.99    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=21;Dels=0.0;FS=4.419;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=13.33;ReadPosRankSum=-0.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FBLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338333    GT:AD:DP:GQ:PL    0/1:10,11:21:99:310,0,279
5    167984721    rs13185224    T    C    109.78    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.831;QD=9.15;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239231    GT:AD:DP:GQ:PL    0/1:7,5:12:99:140,0,255
5    167986274    rs158894    G    C    88.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239231    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
5    168043619    rs61612167    G    T    1387.98    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=2.138;DB;DP=77;Dels=0.0;FS=4.71;HRun=0;HaplotypeScore=0.734;MQ=50.14;MQ0=0;MQRankSum=0.288;QD=18.03;ReadPosRankSum=0.539;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTC-575D19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406049    GT:AD:DP:GQ:PL    0/1:30,47:77:99:1418,0,749
5    168098463    rs292486    A    G    261.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.17;SNPEFF_AMINO_ACID_CHANGE=S1289;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_168098203_168098488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404867    GT:AD:DP:GQ:PL    1/1:0,10:10:24.05:295,24,0
5    168100545    rs292487    T    A    110.82    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.16;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:141,0,27
5    168175205    rs11748347    C    G    532.92    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.19;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=0.012;QD=11.84;ReadPosRankSum=0.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519486    GT:AD:DP:GQ:PL    0/1:24,21:45:99:563,0,815
5    168176517    rs2304035    A    G    887.47    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DB;DP=72;Dels=0.0;FS=0.91;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.639;QD=12.33;ReadPosRankSum=1.41;SNPEFF_AMINO_ACID_CHANGE=I699;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_168176477_168176640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:38,34:72:99:917,0,1155
5    168180081    rs10036727    C    T    346.09    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.058;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=11.16;ReadPosRankSum=-2.266;SNPEFF_AMINO_ACID_CHANGE=G618S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_168179960_168180103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:17,14:31:99:376,0,487
5    168180361    rs149106224    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    168187760    rs2288797    G    C    136.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=13.69;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,152
5    168188048    rs7725649    A    T    307    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.185;QD=23.62;ReadPosRankSum=-0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:3,9:13:82.42:337,0,82
5    168189501    rs2288796    C    T    293.43    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.279;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.292;QD=14.67;ReadPosRankSum=0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:9,11:20:99:323,0,291
5    168189825    rs2288795    C    T    253.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.531;QD=21.16;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:3,9:12:79.47:284,0,79
5    168212951    rs891921    A    G    778.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.441;DB;DP=75;Dels=0.0;FS=0.916;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.163;QD=10.39;ReadPosRankSum=-0.809;SNPEFF_AMINO_ACID_CHANGE=V371A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_168212912_168212983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:45,30:75:99:809,0,1398
5    168233413    rs3797716    G    A    630.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=58.89;MQ0=0;QD=30.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:664,48,0
5    168233474    rs3797715    G    A    503.65    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=36;Dels=0.0;FS=9.728;HRun=2;HaplotypeScore=1.8664;MQ=58.18;MQ0=0;MQRankSum=0.0;QD=13.99;ReadPosRankSum=0.887;SNPEFF_AMINO_ACID_CHANGE=N304;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_168233451_168233592;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:19,17:36:99:534,0,561
5    168244256    rs67968410    G    C    141.11    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.83;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:5,6:11:99:171,0,168
5    168244506    rs35712765    G    GA    747.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=73.6819;IndelType=I;MQ=62.5;MQ0=0;QD=43.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:790,51,0
5    168244543    rs905799    A    G    457.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.64;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:491,36,0
5    168250429    rs1875977    C    T    357.69    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=4.098;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.34;MQ0=0;MQRankSum=-0.019;QD=10.52;ReadPosRankSum=0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:22,12:34:99:388,0,620
5    168671698    rs10063591    A    T    715.02    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=1.861;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.589;QD=19.32;ReadPosRankSum=-2.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:13,24:37:99:745,0,418
5    168690612    rs62376934    A    G    234.64    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.218;DB;DP=21;Dels=0.0;FS=2.318;HRun=1;HaplotypeScore=1.577;MQ=58.89;MQ0=0;MQRankSum=0.387;QD=11.17;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332966    GT:AD:DP:GQ:PL    0/1:11,10:21:99:265,0,342
5    169096207    .    T    TAAAAC    1061.90    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.681;DP=35;FS=2.319;HRun=0;HaplotypeScore=153.8374;IndelType=I;MQ=56.91;MQ0=0;MQRankSum=-0.52;QD=30.34;ReadPosRankSum=-0.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:25,8:35:99:1101,0,773
5    169097474    rs2306564    G    C    108.80    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.34;MQ0=0;MQRankSum=-1.867;QD=7.77;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:9,5:14:99:139,0,255
5    169097505    rs111473735    T    TTTTTA    899.76    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.923;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=135.3052;IndelType=I;MQ=52.5;MQ0=0;MQRankSum=-2.513;QD=32.13;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:18,9:28:99:939,0,637
5    169101599    rs2244445    C    T    207.67    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=11.54;ReadPosRankSum=2.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:10,8:18:99:238,0,296
5    169129041    rs2112702    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519734    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
5    169129422    rs2306559    A    G    1448.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_AMINO_ACID_CHANGE=K458;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_169129307_169129431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1482,114,0
5    169129579    rs11134586    C    T    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519734    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
5    169138909    rs2306558    G    A    1134.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    1/1:0,38:38:87.28:1167,87,0
5    169145965    rs2291270    T    G    52.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
5    169422920    rs2059110    A    G    182.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:215,18,0
5    169435396    rs2287726    G    T    100.29    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.271;QD=7.71;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:8,5:13:99:130,0,255
5    169435713    rs2287727    A    C    769.56    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.357;DB;DP=57;Dels=0.0;FS=1.007;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.104;QD=13.5;ReadPosRankSum=0.44;SNPEFF_AMINO_ACID_CHANGE=L1065;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_169435692_169435750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:30,27:57:99:800,0,965
5    169454831    rs13175232    G    A    307.83    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=21;Dels=0.0;FS=2.318;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.88;QD=14.66;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:10,11:21:99:338,0,282
5    169454833    rs13157227    T    C    318.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.626;DB;DP=22;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.89;QD=14.48;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:10,12:22:99:348,0,283
5    169454941    rs9791113    C    G    450.89    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.586;DB;DP=29;Dels=0.0;FS=1.51;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=1.83;QD=15.55;ReadPosRankSum=-0.22;SNPEFF_AMINO_ACID_CHANGE=L1152;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_169454867_169454952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:13,15:29:99:481,0,343
5    169461399    rs3763047    G    A    717.46    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DB;DP=48;Dels=0.0;FS=2.736;HRun=0;HaplotypeScore=0.6651;MQ=59.52;MQ0=0;MQRankSum=-0.742;QD=14.95;ReadPosRankSum=-0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:20,28:48:99:747,0,487
5    169461547    rs3763048    C    T    329.76    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.834;DB;DP=37;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.283;QD=8.91;ReadPosRankSum=1.027;SNPEFF_AMINO_ACID_CHANGE=T1204;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_169461403_169461559;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:21,16:37:99:360,0,579
5    169461704    rs3763049    C    T    38.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.69;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433448    GT:AD:DP:GQ:PL    0/1:3,2:5:68.42:68,0,85
5    169468243    rs2270895    A    G    65.90    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.24;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:5,3:8:95.89:96,0,178
5    169506954    rs6879798    G    C    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.15;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256935    GT:AD:DP:GQ:PL    0/1:2,2:4:57.57:67,0,58
5    169510023    rs9307    A    G    32.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.7;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524185    GT:AD:DP:GQ:PL    0/1:5,2:7:62.92:63,0,185
5    169533606    rs2277945    T    C    110.45    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.69;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.676;QD=6.14;ReadPosRankSum=0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306268    GT:AD:DP:GQ:PL    0/1:13,5:18:99:140,0,430
5    169535522    rs10063424    T    C    1704.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=34.78;SNPEFF_AMINO_ACID_CHANGE=Y253;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_169535338_169536727;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449804    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1737,132,0
5    169661994    rs957998    G    C    401.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.67;SNPEFF_AMINO_ACID_CHANGE=R26P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_169661981_169662074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521850    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:434,33,0
5    169685163    rs315717    C    T    4518.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=Q121;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_169685041_169685170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521416    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4518,337,0
5    169689604    rs395407    G    C    936.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046794    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:970,69,0
5    169701017    rs36094591    C    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522823    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    169701546    rs4867953    G    C    284.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522823    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:318,27,0
5    169702390    rs2271146    C    A    3100.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=33.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522823    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3134,241,0
5    169805956    rs2301149    C    G    46.62    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.196;QD=2.91;ReadPosRankSum=-0.718;SNPEFF_AMINO_ACID_CHANGE=V110L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_169805168_169805977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274629    GT:AD:DP:GQ:PL    0/1:11,5:16:76.61:77,0,379
5    169806001    rs314157    T    C    57.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.81;ReadPosRankSum=2.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521859    GT:AD:DP:GQ:PL    0/1:8,4:12:87.70:88,0,250
5    169810966    rs703507    A    C    31.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377360    GT:AD:DP:GQ:PL    0/1:3,2:5:61.74:62,0,74
5    170149573    rs2277952    C    T    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328939    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
5    170149674    rs12514966    A    T    630.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328939    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:664,51,0
5    170159997    rs17650650    C    T    376.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328939    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:409,30,0
5    170160749    rs4868018    G    A    173.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328939    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
5    170162666    rs1363712    T    C    931.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KCNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328939    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:965,72,0
5    170221067    rs2879354    C    G    35.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518122    GT:AD:DP:GQ:PL    1/1:0,2:2:6:66,6,0
5    170221185    rs6884917    A    G    319.90    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.465;DB;DP=31;Dels=0.0;FS=2.483;HRun=1;HaplotypeScore=1.933;MQ=56.96;MQ0=0;MQRankSum=1.214;QD=10.32;ReadPosRankSum=-1.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518122    GT:AD:DP:GQ:PL    0/1:17,14:31:99:350,0,567
5    170232614    rs2303135    T    C    72.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265294    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:102,0,69
5    170322919    rs2287894    T    A    246.68    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=22.43;ReadPosRankSum=1.931;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519944    GT:AD:DP:GQ:PL    0/1:3,8:11:88.67:277,0,89
5    170336614    rs1833596    G    C    71.14    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.6274;MQ=47.12;MQ0=0;MQRankSum=0.729;QD=4.45;ReadPosRankSum=-1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523189    GT:AD:DP:GQ:PL    0/1:7,4:16:99:101,0,127
5    170337839    rs10076811    T    C    44.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.12;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523189    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:74,0,32
5    170343326    rs78671557    G    A    166.95    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.508;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.9;MQ0=0;MQRankSum=1.303;QD=7.26;ReadPosRankSum=-0.969;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443155    GT:AD:DP:GQ:PL    0/1:16,7:23:99:197,0,308
5    170343353    rs78171408    G    A    232.22    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.571;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=52.9;MQ0=0;MQRankSum=0.697;QD=7.49;ReadPosRankSum=1.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443155    GT:AD:DP:GQ:PL    0/1:21,10:31:99:262,0,501
5    170345986    rs1862237    A    G    69.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=11.64;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523189    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,103
5    170346000    rs1862238    A    T    35.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=8.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523189    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:66,0,31
5    170380523    rs930891    G    A    155.62    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=11.97;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523189    GT:AD:DP:GQ:PL    0/1:7,6:13:99:186,0,241
5    170395512    rs2879366    A    T    179.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=13.83;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521165    GT:AD:DP:GQ:PL    0/1:7,6:13:99:210,0,245
5    170610273    rs6555936    G    A    918.19    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=59;Dels=0.0;FS=1.022;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.69;QD=15.56;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523189    GT:AD:DP:GQ:PL    0/1:29,30:59:99:948,0,816
5    170640827    rs4867648    C    A    61.39    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.529;QD=3.61;ReadPosRankSum=-0.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524364    GT:AD:DP:GQ:PL    0/1:13,4:17:91.39:91,0,474
5    170720755    rs2914330    T    A    387.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RANBP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523189    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:420,33,0
5    170818897    rs3830032    A    G    83.44    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.365;QD=7.59;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521260    GT:AD:DP:GQ:PL    0/1:6,5:11:99:113,0,207
5    170819887    rs3830035    G    A    974.88    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=81;Dels=0.0;FS=8.062;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=0.383;QD=12.04;ReadPosRankSum=-1.292;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521260    GT:AD:DP:GQ:PL    0/1:43,38:81:99:1005,0,1517
5    170820024    rs3830036    G    A    99.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=8.31;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518587    GT:AD:DP:GQ:PL    0/1:8,4:12:99:130,0,288
5    170828170    rs62383969    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521672    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    170832243    rs11134698    A    G    217.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=0.935;QD=14.53;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296930    GT:AD:DP:GQ:PL    0/1:6,9:15:99:248,0,207
5    170834643    .    T    TA    203.18    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.372;DP=15;FS=0.0;HRun=3;HaplotypeScore=31.7818;IndelType=I;MQ=60.72;MQ0=0;MQRankSum=-1.794;QD=13.55;ReadPosRankSum=-0.984;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393820    GT:AD:DP:GQ:PL    0/1:8,7:15:99:242,0,243
5    170847555    rs6555955    T    C    615.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274625    GT:AD:DP:GQ:PL    1/1:0,19:19:57.13:648,57,0
5    171318894    rs10058906    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265094    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    171480055    rs4569891    G    A    231.02    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.36;QD=8.25;ReadPosRankSum=0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519269    GT:AD:DP:GQ:PL    0/1:18,10:28:99:261,0,594
5    171481606    rs10155597    A    G    334.84    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.38;DB;DP=80;Dels=0.0;FS=2.662;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.084;QD=4.19;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=C873;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_171481573_171481698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000176763    GT:AD:DP:GQ:PL    0/1:54,26:80:99:365,0,1441
5    171532887    rs3111482    C    T    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517381    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    171533629    rs2306963    A    G    126.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_AMINO_ACID_CHANGE=S261;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_171533624_171533818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000176763    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
5    171533656    rs2306962    C    T    271.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=30.15;SNPEFF_AMINO_ACID_CHANGE=S252;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_171533624_171533818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000176763    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:304,24,0
5    171554473    rs2279514    G    A    92.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=6.64;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000176763    GT:AD:DP:GQ:PL    0/1:10,4:14:99:123,0,298
5    171621408    rs66527855    A    AT    415.94    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=3.234;DB;DP=55;FS=0.0;HRun=13;HaplotypeScore=375.0041;IndelType=I;MQ=57.62;MQ0=0;MQRankSum=-0.383;QD=7.56;ReadPosRankSum=-1.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398186    GT:AD:DP:GQ:PL    0/1:34,20:55:99:455,0,218
5    171621430    rs6862632    A    G    492.38    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.121;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.86;MQ0=0;MQRankSum=0.086;QD=14.48;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398186    GT:AD:DP:GQ:PL    0/1:18,16:34:99:522,0,541
5    171621440    rs6862640    A    G    392.47    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.196;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.13;MQ0=0;MQRankSum=0.502;QD=13.53;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398186    GT:AD:DP:GQ:PL    0/1:15,14:29:99:422,0,496
5    171723739    rs9686997    T    C    2252.01    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=5.002;DB;DP=195;Dels=0.0;FS=7.211;HRun=0;HaplotypeScore=0.0;MQ=46.41;MQ0=0;MQRankSum=-2.205;QD=11.55;ReadPosRankSum=1.771;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:93,102:195:99:2282,0,2330
5    171785892    rs2569232    A    G    609.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:643,48,0
5    171800897    rs2731717    A    G    167.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=11.16;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    0/1:6,9:15:99:197,0,201
5    171808875    rs7726175    G    A    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    171808930    rs2731722    C    T    81.49    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.37;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:111,0,31
5    171849289    rs6873315    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
5    171849471    rs17074773    G    A    104.66    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=8.05;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=S35;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_171849420_171849500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    0/1:8,5:13:99:135,0,198
5    171866575    rs11747030    G    A    949.75    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.776;DB;DP=60;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.868;QD=15.83;ReadPosRankSum=0.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    0/1:27,33:60:99:980,0,661
5    171866695    rs79198163    C    T    456.90    HaplotypeScoreFilter13    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.665;DB;DP=39;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=34.0483;MQ=60.04;MQ0=0;MQRankSum=1.996;QD=11.72;ReadPosRankSum=2.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    0/1:16,23:39:99:487,0,329
5    171866696    .    GCA    G    350.36    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.23;DP=40;FS=0.0;HRun=0;HaplotypeScore=228.644;IndelType=D;MQ=60.58;MQ0=0;MQRankSum=1.222;QD=8.76;ReadPosRankSum=0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311601    GT:AD:DP:GQ:PL    0/1:24,15:40:99:389,0,158
5    172189304    rs322356    G    C    121.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-779O18.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521069    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
5    172189796    rs3830204    C    CAG    1471.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=161.2896;IndelType=I;MQ=55.67;MQ0=0;QD=47.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-779O18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518941    GT:AD:DP:GQ:PL    1/1:3,28:31:84.29:1513,84,0
5    172189805    rs322355    T    C    906.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.57;MQ0=0;QD=30.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-779O18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518941    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:939,81,0
5    172196711    rs2431663    G    T    1768.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=35.37;SNPEFF_AMINO_ACID_CHANGE=I135;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_172196578_172196797;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434080    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1801,138,0
5    172197326    rs112535575    A    AT    241.19    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.539;DB;DP=26;FS=1.897;HRun=8;HaplotypeScore=103.5715;IndelType=I;MQ=59.06;MQ0=0;MQRankSum=1.088;QD=9.28;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239223    GT:AD:DP:GQ:PL    0/1:15,11:26:99:280,0,263
5    172197581    rs34507926    G    C    37.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.35;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239223    GT:AD:DP:GQ:PL    0/1:3,4:7:67.42:67,0,99
5    172324897    rs564109    A    T    1597.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=59.63;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393784    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1631,120,0
5    172324978    rs564349    G    A    763.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393784    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:797,60,0
5    172336616    rs2302957    C    T    1043.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326654    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1077,81,0
5    172341893    rs144149632    TC    T    245.74    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.023;DB;DP=25;FS=0.0;HRun=4;HaplotypeScore=58.1308;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.915;QD=9.83;ReadPosRankSum=-0.028;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_172341717_172345338;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000326654    GT:AD:DP:GQ:PL    0/1:15,10:25:99:285,0,533
5    172351160    rs2302958    G    A    173.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=15.82;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518247    GT:AD:DP:GQ:PL    0/1:4,6:11:99:204,0,114
5    172395408    rs475936    T    A    2205.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL26L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265100    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2239,169,0
5    172395664    rs11749686    T    C    1259.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL26L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265100    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1293,96,0
5    172396394    rs505788    C    T    2299.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.67;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL26L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265100    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2332,172,0
5    172447762    rs17075508    G    A    1713.15    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7584;MQ=59.59;MQ0=0;MQRankSum=0.018;QD=16.96;ReadPosRankSum=-0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517669    GT:AD:DP:GQ:PL    0/1:42,59:101:99:1743,0,1071
5    172659511    rs703752    C    A    350.61    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.281;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.69;QD=19.48;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX2-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424406    GT:AD:DP:GQ:PL    0/1:5,13:18:99:381,0,163
5    172745269    rs4041247    AAGAGAG    A    245.32    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=103.8166;IndelType=D;MQ=49.26;MQ0=0;MQRankSum=-1.307;QD=18.87;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265087    GT:AD:DP:GQ:PL    0/1:8,5:13:99:284,0,362
5    172753089    rs10076089    A    G    543.44    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=2.441;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.7;QD=13.93;ReadPosRankSum=-0.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265087    GT:AD:DP:GQ:PL    0/1:16,23:39:99:573,0,556
5    173316729    rs359467    G    A    5025.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517880    GT:AD:DP:GQ:PL    1/1:0,147:147:99:5025,394,0
5    173380346    rs969518    C    T    444.86    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=22;Dels=0.0;FS=4.559;HRun=0;HaplotypeScore=0.6651;MQ=58.95;MQ0=0;MQRankSum=-0.921;QD=20.22;ReadPosRankSum=-0.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265085    GT:AD:DP:GQ:PL    0/1:8,14:22:99:475,0,185
5    173989035    rs4642387    C    T    1877.91    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=4.337;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9448;MQ=56.27;MQ0=0;MQRankSum=-3.359;QD=16.62;ReadPosRankSum=0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SUMO2P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505273    GT:AD:DP:GQ:PL    0/1:52,61:113:99:1908,0,1433
5    174152100    rs2048152    G    A    84.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=8.46;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239243    GT:AD:DP:GQ:PL    0/1:5,5:10:99:115,0,168
5    174156168    rs4242182    T    C    763.79    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.576;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.09;MQ0=0;MQRankSum=0.123;QD=14.98;ReadPosRankSum=1.312;SNPEFF_AMINO_ACID_CHANGE=M129T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_174156162_174158144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239243    GT:AD:DP:GQ:PL    0/1:24,27:51:99:794,0,674
5    174422094    rs11749389    G    T    107.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.9;ReadPosRankSum=0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTC-281M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377300    GT:AD:DP:GQ:PL    0/1:2,4:6:59.57:137,0,60
5    174868700    rs686    G    A    389.40    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.576;DB;DP=33;Dels=0.0;FS=1.967;HRun=2;HaplotypeScore=1.7262;MQ=59.3;MQ0=0;MQRankSum=1.387;QD=11.8;ReadPosRankSum=0.057;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329144    GT:AD:DP:GQ:PL    0/1:19,14:33:99:419,0,534
5    174868840    rs155417    T    C    1707.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=S421;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_174868037_174870378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329144    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1741,141,0
5    174870150    rs4532    C    T    583.91    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.986;DB;DP=42;Dels=0.0;FS=10.067;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.944;QD=13.9;ReadPosRankSum=1.0;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_174868037_174870378;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329144    GT:AD:DP:GQ:PL    0/1:20,22:42:99:614,0,588
5    175387139    rs79720333    C    T    180.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=12.66;MQ0=19;QD=5.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510300    GT:AD:DP:GQ:PL    1/1:0,34:34:24.01:213,24,0
5    175394181    .    G    A    287.11    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=165;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.57;MQ0=125;QD=1.74;SNPEFF_AMINO_ACID_CHANGE=S119;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_175394114_175394270;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265097    GT:AD:DP:GQ:PL    1/1:58,107:165:36.01:320,36,0
5    175511992    rs62389230    C    T    1184.99    MQFilter40    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=120;Dels=0.0;FS=5.726;HRun=1;HaplotypeScore=0.0;MQ=30.69;MQ0=31;MQRankSum=-2.713;QD=9.87;ReadPosRankSum=2.01;SNPEFF_AMINO_ACID_CHANGE=L9;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_175511909_175511996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253490    GT:AD:DP:GQ:PL    0/1:47,73:120:99:1215,0,935
5    175512075    rs61620397    A    AT    450.34    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.667;DB;DP=45;FS=0.0;HRun=9;HaplotypeScore=125.6999;IndelType=I;MQ=41.65;MQ0=0;MQRankSum=0.237;QD=10.01;ReadPosRankSum=-0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253490    GT:AD:DP:GQ:PL    0/1:26,19:45:99:489,0,360
5    175512211    rs12520581    C    T    40.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.19;MQ0=0;QD=10.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253490    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:72,6,0
5    175528527    rs116633144    A    T    323.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.78;MQ0=19;QD=10.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503533    GT:AD:DP:GQ:PL    1/1:0,32:32:33.06:357,33,0
5    175530166    rs146119027    G    C    154.39    MQFilter40    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=0.268;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7186;MQ=18.73;MQ0=8;MQRankSum=0.615;QD=2.14;ReadPosRankSum=0.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503724    GT:AD:DP:GQ:PL    0/1:55,17:72:99:184,0,580
5    175530214    .    C    T    439    MQFilter40    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DP=124;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.5162;MQ=31.82;MQ0=5;MQRankSum=-1.4;QD=3.54;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503724    GT:AD:DP:GQ:PL    0/1:90,34:124:99:469,0,1816
5    175533585    .    C    T    154.64    MQFilter40;QDFilter2    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=3.611;DP=194;Dels=0.0;FS=2.099;HRun=0;HaplotypeScore=2.4905;MQ=32.59;MQ0=25;MQRankSum=-7.391;QD=0.8;ReadPosRankSum=1.969;SNPEFF_AMINO_ACID_CHANGE=P208L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_175533563_175533593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000515817    GT:AD:DP:GQ:PL    0/1:142,52:194:99:185,0,3276
5    175535591    .    G    A    322.93    MQFilter40    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.01;DP=143;Dels=0.0;FS=3.315;HRun=1;HaplotypeScore=0.8941;MQ=13.8;MQ0=64;MQRankSum=1.578;QD=2.26;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253490    GT:AD:DP:GQ:PL    0/1:96,47:143:99:353,0,311
5    175540656    .    G    C    37.98    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.18;MQ0=3;MQRankSum=1.231;QD=4.75;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393522    GT:AD:DP:GQ:PL    0/1:5,3:8:40.31:68,0,40
5    175771987    rs191044462    C    A    104.69    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=14.96;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298569    GT:AD:DP:GQ:PL    0/1:2,5:7:65.82:135,0,66
5    175772015    rs417852    C    G    570.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298569    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:604,45,0
5    175782420    rs11407015    A    AG    302.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=34.7154;IndelType=I;MQ=59.87;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506613    GT:AD:DP:GQ:PL    1/1:0,9:10:29.12:345,29,0
5    175793717    rs3815898    C    T    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310389    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
5    175811094    rs4815    C    CGT    3361.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.0;HRun=0;HaplotypeScore=180.8326;IndelType=I;MQ=58.93;MQ0=2;QD=45.42;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_175810984_175811097;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP16;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000451293    GT:AD:DP:GQ:PL    1/1:6,67:72:99:3361,199,0
5    175819621    rs5866    T    C    41.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=8.29;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503175    GT:AD:DP:GQ:PL    0/1:3,2:5:67.08:71,0,67
5    175843461    rs71903275    CG    C    602.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=5;HaplotypeScore=210.6962;IndelType=D;MQ=57.1;MQ0=0;QD=28.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508425    GT:AD:DP:GQ:PL    1/1:1,20:21:57.16:644,57,0
5    175915835    rs2963667    C    T    163.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510730    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
5    175923354    rs2963669    G    A    227.57    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.224;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=13.39;ReadPosRankSum=0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261942    GT:AD:DP:GQ:PL    0/1:9,8:17:99:258,0,234
5    175923431    rs2963670    G    A    356.15    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.766;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8997;MQ=58.69;MQ0=0;MQRankSum=0.361;QD=11.13;ReadPosRankSum=-0.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261942    GT:AD:DP:GQ:PL    0/1:18,14:32:99:386,0,656
5    175933691    rs113700453    TGTGTGTGC    T    1802.34    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=5.873;DB;DP=67;FS=0.0;HRun=0;HaplotypeScore=500.613;IndelType=D;MQ=51.76;MQ0=0;MQRankSum=-4.697;QD=26.9;ReadPosRankSum=-0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261942    GT:AD:DP:GQ:PL    0/1:40,27:67:99:1841,0,3894
5    175956177    rs2241584    G    A    178.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=17.85;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504160    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,133
5    175956271    rs890835    A    C    537.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504160    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:571,45,0
5    175956516    rs2241585    G    A    558.12    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.819;DB;DP=42;Dels=0.0;FS=1.147;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.935;QD=13.29;ReadPosRankSum=0.834;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504160    GT:AD:DP:GQ:PL    0/1:19,23:42:99:588,0,528
5    175992258    rs6556275    A    G    411.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:444,39,0
5    175992266    rs11749894    C    G    280.10    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.778;QD=20.01;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:4,10:14:99:310,0,114
5    175992519    rs4523018    T    A    159.72    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.66;MQ0=0;MQRankSum=0.573;QD=15.97;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:3,7:10:96.94:190,0,97
5    175995571    rs12716317    C    G    196.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:230,18,0
5    175995935    rs10056130    C    T    1153.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510124    GT:AD:DP:GQ:PL    1/1:0,34:34:90.27:1186,90,0
5    176001242    rs115454751    A    G    105.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:2,4:6:64.18:135,0,64
5    176001975    rs1078450    T    C    291.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:325,24,0
5    176002144    rs4242200    A    C    2073.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_AMINO_ACID_CHANGE=I185;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176002085_176002210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2106,157,0
5    176002873    rs3762969    C    T    289.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:322,27,0
5    176002926    rs3762968    C    A    454.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:488,39,0
5    176004212    rs11959522    A    C    34.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
5    176004312    rs11749537    A    G    59.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:92,9,0
5    176004476    rs11134982    T    C    286.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=V424A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176004400_176004555;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:319,24,0
5    176004846    rs1565149    C    T    353.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:387,30,0
5    176004866    rs35146200    A    AGT    328.02    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=61.1998;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=0.751;QD=36.45;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:1,8:9:10.13:367,0,10
5    176004903    rs11747451    T    C    136.03    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=19.43;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:2,5:7:57.15:166,0,57
5    176005175    rs1565150    A    C    165.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
5    176005184    rs1565151    G    A    148.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:181,15,0
5    176005477    rs2358747    C    T    587.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=D562;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176005366_176005609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:621,45,0
5    176008238    rs4867840    G    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    176011198    rs115353627    A    G    217.69    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.164;QD=11.46;ReadPosRankSum=0.776;SNPEFF_AMINO_ACID_CHANGE=N689S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176011191_176011260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:10,9:19:99:248,0,332
5    176011264    rs752139    T    C    608.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,19:19:51.13:641,51,0
5    176011889    rs4868660    G    A    262.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.041;QD=17.48;ReadPosRankSum=0.674;SNPEFF_AMINO_ACID_CHANGE=A869;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176011411_176012016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:5,10:15:99:292,0,172
5    176012800    rs3749627    C    T    31.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=6.36;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:3,2:5:60.75:62,0,61
5    176015815    rs4868661    G    A    200.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
5    176016822    rs11134983    T    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    176017455    rs2291442    C    T    426.12    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=27;Dels=0.0;FS=9.464;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=0.412;QD=15.78;ReadPosRankSum=-1.286;SNPEFF_AMINO_ACID_CHANGE=T1128M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176017426_176017486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261944    GT:AD:DP:GQ:PL    0/1:13,14:27:99:456,0,339
5    176017549    rs4868662    C    T    648.72    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.658;DB;DP=44;Dels=0.0;FS=2.716;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.493;QD=14.74;ReadPosRankSum=0.258;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508085    GT:AD:DP:GQ:PL    0/1:23,21:44:99:679,0,699
5    176018090    rs3792728    C    T    93.29    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508085    GT:AD:DP:GQ:PL    0/1:5,4:9:99:123,0,181
5    176018545    rs11134984    G    A    487.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508085    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:521,42,0
5    176020159    rs34977067    C    G    400.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.308;DB;DP=26;Dels=0.0;FS=1.721;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.128;QD=15.41;ReadPosRankSum=0.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416365    GT:AD:DP:GQ:PL    0/1:13,13:26:99:431,0,376
5    176020203    rs34425002    T    C    406.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.85;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.417;QD=11.61;ReadPosRankSum=0.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416365    GT:AD:DP:GQ:PL    0/1:20,15:35:99:436,0,621
5    176022313    rs12517687    A    G    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.15;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416365    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:67,0,65
5    176024880    rs4868663    C    T    884.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=G652;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176022803_176026878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303991    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:917,69,0
5    176025938    rs6556276    T    C    3120.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7753;MQ=57.73;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=M300V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176022803_176026878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303991    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3154,247,0
5    176026119    rs142779818    TCTCAAAGACCCAGGATCCTCCTTC    T    5154.13    PASS    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=8.32;DB;DP=106;FS=4.423;HRun=0;HaplotypeScore=2169.7066;IndelType=D;MQ=51.9;MQ0=0;MQRankSum=-5.414;QD=48.62;ReadPosRankSum=1.133;SNPEFF_AMINO_ACID_CHANGE=RKEDPGSLR231R;SNPEFF_CODON_CHANGE=aggaaggaggatcctgggtctttgaga/aga;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_5_176022803_176026878;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303991    GT:AD:DP:GQ:PL    0/1:81,25:106:99:5154,0,16145
5    176026121    .    TCAAAGACCCAGGA    T    2523.12    PASS    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=7.972;DP=99;FS=3.211;HRun=0;HaplotypeScore=1659.4593;IndelType=D;MQ=53.66;MQ0=0;MQRankSum=-6.103;QD=25.49;ReadPosRankSum=2.819;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_176022803_176026878;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000303991    GT:AD:DP:GQ:PL    0/1:84,15:99:99:2562,0,10865
5    176026135    .    TCCTCCTTCCTC    T    2047.15    PASS    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=7.668;DP=92;FS=6.466;HRun=0;HaplotypeScore=1527.3474;IndelType=D;MQ=53.15;MQ0=0;MQRankSum=-6.8;QD=22.25;ReadPosRankSum=3.71;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_176022803_176026878;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000303991    GT:AD:DP:GQ:PL    0/1:77,15:92:99:2086,0,8823
5    176053336    rs5873543    GGT    G    217.47    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.691;DB;DP=14;FS=3.736;HRun=0;HaplotypeScore=78.6277;IndelType=D;MQ=59.13;MQ0=0;MQRankSum=0.888;QD=15.53;ReadPosRankSum=1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310112    GT:AD:DP:GQ:PL    0/1:5,6:14:54.97:257,0,55
5    176053645    rs2291441    C    G    131.85    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.984;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.85;QD=5.73;ReadPosRankSum=1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310112    GT:AD:DP:GQ:PL    0/1:14,9:23:99:162,0,423
5    176056529    rs4868669    A    G    167.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310112    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
5    176056806    rs6879864    C    T    77.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310112    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
5    176068947    rs12515826    A    G    79.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.26;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EIF4E1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318682    GT:AD:DP:GQ:PL    0/1:2,4:6:64.16:110,0,64
5    176079574    rs11739733    G    A    65.74    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.22;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298564    GT:AD:DP:GQ:PL    0/1:5,3:8:95.74:96,0,176
5    176080142    rs3797465    T    C    61.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.85;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298564    GT:AD:DP:GQ:PL    0/1:3,4:7:91.96:92,0,107
5    176080152    rs9313740    G    A    238.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298564    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:271,21,0
5    176081856    rs13183320    A    G    77.30    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.32;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298564    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:107,0,29
5    176082912    rs6897431    C    A    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=9.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298564    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:71,6,0
5    176083175    rs6878977    T    G    534.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298564    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:568,45,0
5    176083997    rs4868677    G    A    936.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504168    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:970,75,0
5    176084894    rs748742    C    T    72.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503030    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:105,9,0
5    176238031    rs2917637    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329542    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
5    176304399    rs2304517    A    G    391.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292432    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:424,33,0
5    176305466    rs2304516    T    A    1471.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292432    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1505,117,0
5    176305678    rs478253    C    T    57.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.537;QD=9.53;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292432    GT:AD:DP:GQ:PL    0/1:3,3:6:87.19:87,0,105
5    176306676    rs2292257    G    A    714.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292432    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:747,57,0
5    176308870    rs61042413    C    CAG    904.83    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.296;DB;DP=48;FS=6.374;HRun=0;HaplotypeScore=145.1459;IndelType=I;MQ=58.41;MQ0=0;MQRankSum=0.283;QD=18.47;ReadPosRankSum=1.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514058    GT:AD:DP:GQ:PL    0/1:31,18:48:99:944,0,1081
5    176316201    rs691057    A    G    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.62;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504910    GT:AD:DP:GQ:PL    0/1:3,3:6:69.73:70,0,103
5    176333126    rs2292256    C    T    142.13    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=10.93;ReadPosRankSum=1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UIMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503273    GT:AD:DP:GQ:PL    0/1:7,6:13:99:172,0,196
5    176338163    .    AAAGAAAAGAAAAG    A    338.53    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DP=13;FS=0.0;HRun=0;HaplotypeScore=156.8531;IndelType=D;MQ=61.06;MQ0=0;MQRankSum=1.2;QD=26.04;ReadPosRankSum=-1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UIMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323774    GT:AD:DP:GQ:PL    0/1:6,7:13:99:378,0,542
5    176378574    rs365132    G    T    1933.92    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.265;DB;DP=163;DS;Dels=0.0;FS=0.816;HRun=0;HaplotypeScore=3.8378;MQ=59.86;MQ0=0;MQRankSum=1.185;QD=11.86;ReadPosRankSum=0.283;SNPEFF_AMINO_ACID_CHANGE=T282;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176378475_176378578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UIMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506128    GT:AD:DP:GQ:PL    0/1:96,67:163:99:1964,0,2997
5    176382995    rs3733876    G    A    532.66    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.086;DB;DP=43;Dels=0.0;FS=4.388;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.091;QD=12.39;ReadPosRankSum=-1.039;SNPEFF_AMINO_ACID_CHANGE=P269L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176382960_176383036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UIMC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506128    GT:AD:DP:GQ:PL    0/1:24,19:43:99:563,0,666
5    176395823    .    C    T    705.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DP=64;Dels=0.0;FS=3.494;HRun=1;HaplotypeScore=2.8772;MQ=59.35;MQ0=0;MQRankSum=0.09;QD=11.02;ReadPosRankSum=1.227;SNPEFF_AMINO_ACID_CHANGE=Q233;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176395556_176396292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UIMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377220    GT:AD:DP:GQ:PL    0/1:40,24:64:99:735,0,1392
5    176402401    rs1700490    G    A    1012.69    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=3.887;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.362;QD=12.98;ReadPosRankSum=0.321;SNPEFF_AMINO_ACID_CHANGE=I76;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176402397_176402481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UIMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377219    GT:AD:DP:GQ:PL    0/1:46,32:78:99:1043,0,1228
5    176471284    rs58095821    T    C    286.70    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=24;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.45;MQ0=0;MQRankSum=-0.155;QD=11.95;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF346;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510933    GT:AD:DP:GQ:PL    0/1:13,11:24:99:317,0,406
5    176471286    rs66704389    A    AG    398.86    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=28;FS=0.0;HRun=6;HaplotypeScore=108.7823;IndelType=I;MQ=61.9;MQ0=0;MQRankSum=0.283;QD=14.25;ReadPosRankSum=-0.797;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF346;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510933    GT:AD:DP:GQ:PL    0/1:13,15:28:99:438,0,289
5    176471591    rs149307    C    T    608.13    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=33;Dels=0.0;FS=2.945;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.166;QD=18.43;ReadPosRankSum=0.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF346;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510933    GT:AD:DP:GQ:PL    0/1:13,20:33:99:638,0,426
5    176517292    rs442856    A    G    431.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.79;SNPEFF_AMINO_ACID_CHANGE=Q74R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176517159_176517654;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377207    GT:AD:DP:GQ:PL    1/1:0,15:15:42.08:465,42,0
5    176517326    rs422421    T    C    664.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=L85;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176517159_176517654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377207    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:697,51,0
5    176517461    rs446382    T    G    1083.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=36.1;SNPEFF_AMINO_ACID_CHANGE=R130;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176517159_176517654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377207    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1116,81,0
5    176517797    rs376618    C    T    1908.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=30.29;SNPEFF_AMINO_ACID_CHANGE=P211S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176517755_176518105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377207    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1941,144,0
5    176518784    rs452885    C    T    1131.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.37;SNPEFF_AMINO_ACID_CHANGE=R234;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176518686_176518809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292408    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1165,87,0
5    176519287    rs393923    G    A    381    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426612    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:414,30,0
5    176520243    rs351855    G    A    442.62    PASS    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=1.896;DB;DP=19;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=1.7256;MQ=58.78;MQ0=0;MQRankSum=1.422;QD=23.3;ReadPosRankSum=-1.303;SNPEFF_AMINO_ACID_CHANGE=G388R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176520139_176520332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292408    GT:AD:DP:GQ:PL    0/1:4,15:19:58.03:473,0,58
5    176522728    rs42409    C    T    485.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426612    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:518,39,0
5    176523562    rs31777    C    A    565.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483872    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:598,45,0
5    176523597    rs31776    A    G    795.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483872    GT:AD:DP:GQ:PL    1/1:0,25:25:63.18:829,63,0
5    176630984    rs7721671    T    C    828.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347982    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:862,63,0
5    176636882    rs1363405    C    T    984.65    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.427;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5772;MQ=60.0;MQ0=0;MQRankSum=2.288;QD=13.87;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=C225;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176636637_176639196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347982    GT:AD:DP:GQ:PL    0/1:38,33:71:99:1015,0,1143
5    176637149    rs3733874    G    A    457.13    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=50;Dels=0.0;FS=2.539;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.758;QD=9.14;ReadPosRankSum=1.283;SNPEFF_AMINO_ACID_CHANGE=E314;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176636637_176639196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347982    GT:AD:DP:GQ:PL    0/1:32,18:50:99:487,0,986
5    176637240    rs3733875    G    T    769.06    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.848;DB;DP=44;Dels=0.0;FS=11.894;HRun=1;HaplotypeScore=0.9947;MQ=59.48;MQ0=0;MQRankSum=-0.592;QD=17.48;ReadPosRankSum=0.971;SNPEFF_AMINO_ACID_CHANGE=V345L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176636637_176639196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347982    GT:AD:DP:GQ:PL    0/1:19,25:44:99:799,0,537
5    176637576    rs28932178    T    C    746.12    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.138;DB;DP=45;Dels=0.0;FS=1.172;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.47;QD=16.58;ReadPosRankSum=-0.047;SNPEFF_AMINO_ACID_CHANGE=S457P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176636637_176639196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347982    GT:AD:DP:GQ:PL    0/1:22,23:45:99:776,0,607
5    176700885    rs12660023    G    A    210.77    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=13.17;ReadPosRankSum=-0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504457    GT:AD:DP:GQ:PL    0/1:9,7:16:99:241,0,316
5    176709333    rs72813176    G    A    383.63    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=14.21;ReadPosRankSum=-0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503056    GT:AD:DP:GQ:PL    0/1:13,14:27:99:414,0,454
5    176720766    rs6872201    A    G    201.09    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.51;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=10.58;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513736    GT:AD:DP:GQ:PL    0/1:10,9:19:99:231,0,355
5    176721198    rs28580074    T    C    2540.17    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.302;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.925;MQ=59.87;MQ0=0;MQRankSum=-0.628;QD=17.16;ReadPosRankSum=1.206;SNPEFF_AMINO_ACID_CHANGE=L2008;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176720833_176722763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347982    GT:AD:DP:GQ:PL    0/1:63,85:148:99:2570,0,1828
5    176733116    rs4631    A    G    899.84    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=47;Dels=0.0;FS=5.039;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.336;QD=19.15;ReadPosRankSum=-0.086;SNPEFF_AMINO_ACID_CHANGE=R150;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176733099_176733177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRELID1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303204    GT:AD:DP:GQ:PL    0/1:14,32:47:99:930,0,412
5    176734710    .    C    T    482.76    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.764;QD=17.88;ReadPosRankSum=-1.239;SNPEFF_AMINO_ACID_CHANGE=A193T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176733818_176734965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MXD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423571    GT:AD:DP:GQ:PL    0/1:11,16:27:99:513,0,253
5    176737720    rs13190036    A    G    162.64    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=18.07;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRELID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303204    GT:AD:DP:GQ:PL    0/1:1,8:9:22.59:193,0,23
5    176794191    rs12654812    G    A    155.13    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.86;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336477    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:185,0,23
5    176798306    rs11746443    G    A    687.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.088;DB;DP=49;Dels=0.0;FS=8.705;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.118;QD=14.04;ReadPosRankSum=0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503110    GT:AD:DP:GQ:PL    0/1:21,28:49:99:718,0,680
5    176813404    rs3812036    C    T    447.45    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.802;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6644;MQ=59.45;MQ0=0;MQRankSum=1.592;QD=13.16;ReadPosRankSum=-1.487;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504577    GT:AD:DP:GQ:PL    0/1:20,14:34:99:477,0,563
5    176814656    rs33921462    G    A    130.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.729;QD=13.06;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504577    GT:AD:DP:GQ:PL    0/1:4,6:10:99:161,0,136
5    176815124    rs5030873    T    C    595.35    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.571;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.42;MQ0=0;MQRankSum=-0.867;QD=14.88;ReadPosRankSum=0.515;SNPEFF_AMINO_ACID_CHANGE=H258;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176814995_176815190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324417    GT:AD:DP:GQ:PL    0/1:19,21:40:99:625,0,534
5    176824137    rs7447593    C    G    44.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.07;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358571    GT:AD:DP:GQ:PL    0/1:2,2:4:51.99:74,0,52
5    176830627    rs17876032    G    A    134.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324417    GT:AD:DP:GQ:PL    1/1:0,7:7:15.01:167,15,0
5    176831119    rs17876031    A    G    150.51    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253496    GT:AD:DP:GQ:PL    0/1:1,5:6:23.70:180,0,24
5    176831826    rs17876030    C    G    360.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_AMINO_ACID_CHANGE=A207P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176831811_176831915;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253496    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:394,30,0
5    176831980    rs17876029    T    C    388.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253496    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:422,33,0
5    176836532    rs1801020    A    G    675.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502598    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:708,54,0
5    176857769    rs28726329    A    G    348.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_5_176857677_176857968;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512684    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:381,33,0
5    176858049    rs867755    C    T    244.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512684    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
5    176859848    rs2731664    C    A    73.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.52;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502598    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,115
5    176862963    rs4976695    T    A    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502598    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
5    176863519    rs1130857    G    C    597.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=59.06;MQ0=0;QD=29.9;SNPEFF_AMINO_ACID_CHANGE=P430;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176863394_176863531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393576    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:631,48,0
5    176867943    rs335435    A    G    1063.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_AMINO_ACID_CHANGE=Q488;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176867920_176868054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393576    GT:AD:DP:GQ:PL    1/1:0,33:33:84.24:1096,84,0
5    176885178    rs28538572    A    G    926.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=29.87;SNPEFF_AMINO_ACID_CHANGE=S285P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176885059_176885708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393563    GT:AD:DP:GQ:PL    1/1:0,31:31:75.21:959,75,0
5    176885499    rs2544809    T    C    1573.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.76;MQ0=0;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=I178V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176885059_176885708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393563    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1606,120,0
5    176886539    rs385981    C    T    119.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477391    GT:AD:DP:GQ:PL    1/1:0,6:7:12.04:152,12,0
5    176894756    rs2545794    C    T    83.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.77;SNPEFF_AMINO_ACID_CHANGE=A105;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176894744_176894818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000477391    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
5    176895817    rs446104    G    A    1147.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=26.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292385    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1181,117,0
5    176895818    rs371070    C    A    1158.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=25.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292385    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1191,117,0
5    176916516    rs335462    C    T    53.20    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=2.96;ReadPosRankSum=2.177;SNPEFF_AMINO_ACID_CHANGE=G229S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176916394_176916628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PDLIM7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356618    GT:AD:DP:GQ:PL    0/1:14,4:18:83.19:83,0,389
5    176931706    rs179810    G    C    365.30    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=24;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=15.22;ReadPosRankSum=0.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502380    GT:AD:DP:GQ:PL    0/1:11,13:24:99:395,0,283
5    176935215    rs67430199    GC    G    119.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=6;HaplotypeScore=21.4855;IndelType=D;MQ=61.78;MQ0=0;QD=19.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330503    GT:AD:DP:GQ:PL    1/1:1,5:6:15.04:161,15,0
5    176936272    rs2161110    G    T    33.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330503    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:64,0,33
5    176936590    rs2112181    T    C    262.99    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.453;QD=15.47;ReadPosRankSum=1.813;SNPEFF_AMINO_ACID_CHANGE=S40;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176936476_176936658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357198    GT:AD:DP:GQ:PL    0/1:5,12:17:99:293,0,161
5    176936650    rs28565502    T    C    268.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=L20;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176936476_176936658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357198    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:302,24,0
5    176936819    rs3749728    C    G    64.12    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.708;QD=5.83;ReadPosRankSum=0.715;SNPEFF_AMINO_ACID_CHANGE=R12P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176936803_176936858;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357198    GT:AD:DP:GQ:PL    0/1:8,3:11:94.11:94,0,203
5    176938681    rs28695578    C    T    349.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504781    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:383,30,0
5    176939051    rs28464438    T    C    1008.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=32.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504781    GT:AD:DP:GQ:PL    1/1:0,31:31:84.26:1041,84,0
5    176939688    rs28544348    C    T    1554.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.71;MQ0=0;QD=37.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504781    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1587,120,0
5    176939735    rs335436    A    G    1081.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8824;MQ=57.75;MQ0=0;QD=20.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504781    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1115,102,0
5    176940871    rs335439    G    C    631.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504781    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:665,51,0
5    176948821    rs28491669    T    A    417.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505241    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:451,33,0
5    176950794    rs28723606    A    G    176.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508298    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:210,18,0
5    176950823    rs28629788    G    C    154.84    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=15;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.8941;MQ=55.21;MQ0=0;MQRankSum=0.312;QD=10.32;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508298    GT:AD:DP:GQ:PL    0/1:8,7:15:99:185,0,199
5    176950879    rs28688891    T    C    1067.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508298    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1101,84,0
5    176951276    rs337382    A    G    119.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=S362P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_176951186_176952206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329540    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
5    176963333    rs74292777    G    C    72.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.8667;MQ=58.11;MQ0=0;MQRankSum=0.741;QD=7.22;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502403    GT:AD:DP:GQ:PL    0/1:6,4:10:99:102,0,210
5    176963349    rs335460    G    A    167.40    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-2.383;QD=16.74;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM193B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502403    GT:AD:DP:GQ:PL    0/1:4,6:10:99:197,0,138
5    177020928    rs4976703    C    G    105.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=10.59;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332598    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,211
5    177022428    rs11545868    C    T    449.93    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DB;DP=47;Dels=0.0;FS=3.115;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.23;QD=9.57;ReadPosRankSum=-0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505521    GT:AD:DP:GQ:PL    0/1:29,18:47:99:480,0,806
5    177031348    rs11537644    T    C    559.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_AMINO_ACID_CHANGE=R12;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177031313_177031542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507061    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:592,45,0
5    177031602    rs28499092    C    G    865.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.48;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000029410    GT:AD:DP:GQ:PL    1/1:0,27:28:75.18:898,75,0
5    177035964    rs729459    T    C    1074.41    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DB;DP=79;Dels=0.0;FS=4.451;HRun=0;HaplotypeScore=1.3302;MQ=59.42;MQ0=0;MQRankSum=1.108;QD=13.6;ReadPosRankSum=1.753;SNPEFF_AMINO_ACID_CHANGE=H145;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177035911_177036015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541139    GT:AD:DP:GQ:PL    0/1:36,43:79:99:1104,0,1110
5    177036043    rs6600953    A    G    1516.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502420    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1550,117,0
5    177053334    rs5013573    T    C    629.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.3;MQ0=0;QD=31.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1277A3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500444    GT:AD:DP:GQ:PL    1/1:1,19:20:54.11:663,54,0
5    177054649    rs72309277    ATT    A    118.51    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=41;FS=3.245;HRun=18;HaplotypeScore=231.7589;IndelType=D;MQ=48.55;MQ0=0;MQRankSum=0.794;QD=2.15;ReadPosRankSum=0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1277A3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515045    GT:AD:DP:GQ:PL    0/1:33,10:41:89.30:158,0,89
5    177054672    rs7728458    T    C    572.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=46.27;MQ0=0;QD=19.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1277A3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515045    GT:AD:DP:GQ:PL    1/1:0,29:29:51.15:606,51,0
5    177054752    .    C    A    54.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=52.61;MQ0=0;MQRankSum=-0.72;QD=9.07;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1277A3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515045    GT:AD:DP:GQ:PL    0/1:2,4:6:57.19:84,0,57
5    177058655    rs6876792    A    G    2196.66    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.098;DB;DP=211;Dels=0.0;FS=2.411;HRun=1;HaplotypeScore=0.9933;MQ=46.74;MQ0=4;MQRankSum=-4.735;QD=10.41;ReadPosRankSum=-0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1277A3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515045    GT:AD:DP:GQ:PL    0/1:116,95:211:99:2227,0,3434
5    177058766    rs2334991    G    A    1698.15    MQFilter40    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=162;Dels=0.0;FS=5.508;HRun=0;HaplotypeScore=1.965;MQ=34.04;MQ0=23;MQRankSum=-0.313;QD=10.48;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1277A3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515045    GT:AD:DP:GQ:PL    0/1:83,78:162:99:1728,0,1891
5    177059130    rs6886539    T    G    1283.52    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.391;DB;DP=90;Dels=0.0;FS=5.493;HRun=2;HaplotypeScore=3.1026;MQ=57.69;MQ0=0;MQRankSum=0.38;QD=14.26;ReadPosRankSum=0.711;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1277A3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500444    GT:AD:DP:GQ:PL    0/1:43,47:90:99:1314,0,1262
5    177151329    rs141664226    T    G    218.23    MQFilter40;QDFilter2    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=0.641;DB;DP=164;Dels=0.0;FS=10.414;HRun=0;HaplotypeScore=0.0;MQ=8.75;MQ0=122;MQRankSum=1.332;QD=1.33;ReadPosRankSum=1.025;SNPEFF_AMINO_ACID_CHANGE=E103A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177151296_177151363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393518    GT:AD:DP:GQ:PL    0/1:117,47:164:96.15:248,0,96
5    177151456    rs2270803    C    T    287.86    MQFilter40    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.47;MQ0=2;MQRankSum=0.72;QD=9.29;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393518    GT:AD:DP:GQ:PL    0/1:16,14:31:99:318,0,316
5    177158620    rs74542560    T    C    734.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.57;MQ0=4;QD=27.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393518    GT:AD:DP:GQ:PL    1/1:0,27:27:69.15:767,69,0
5    177161891    rs140979906    A    G    667.22    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.61;MQ0=4;MQRankSum=-1.734;QD=24.71;ReadPosRankSum=1.432;SNPEFF_AMINO_ACID_CHANGE=G159;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177161864_177161934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440605    GT:AD:DP:GQ:PL    1/1:1,26:27:63.17:700,63,0
5    177161950    .    G    A    235.44    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=25.44;MQ0=10;MQRankSum=-0.038;QD=7.85;ReadPosRankSum=-0.567;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503845    GT:AD:DP:GQ:PL    0/1:18,12:30:99:265,0,258
5    177161998    .    C    G    49.26    MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=19.11;MQ0=9;MQRankSum=-0.322;QD=2.9;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503845    GT:AD:DP:GQ:PL    0/1:12,5:17:79.25:79,0,112
5    177167788    .    A    G    110.05    MQFilter40;QDFilter2    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=1.862;DP=146;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=11.9;MQ0=92;MQRankSum=-0.67;QD=0.75;ReadPosRankSum=0.89;SNPEFF_AMINO_ACID_CHANGE=F104;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177167778_177167802;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504518    GT:AD:DP:GQ:PL    0/1:111,35:146:99:140,0,434
5    177168445    rs55659098    A    G    131.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.775;DB;DP=30;Dels=0.0;FS=1.82;HRun=0;HaplotypeScore=0.0;MQ=43.72;MQ0=2;MQRankSum=-1.561;QD=4.37;ReadPosRankSum=-1.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393518    GT:AD:DP:GQ:PL    0/1:20,10:30:99:161,0,608
5    177168452    rs145971974    A    C    105.01    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.069;DB;DP=34;Dels=0.0;FS=3.905;HRun=0;HaplotypeScore=0.0;MQ=44.66;MQ0=2;MQRankSum=-1.675;QD=3.09;ReadPosRankSum=-0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393518    GT:AD:DP:GQ:PL    0/1:23,11:34:99:135,0,697
5    177180236    rs76556918    G    A    3029.09    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.382;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6363;MQ=36.18;MQ0=26;MQRankSum=2.351;QD=23.85;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393518    GT:AD:DP:GQ:PL    1/1:21,105:127:99:3062,247,0
5    177180414    .    C    G    82.69    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=38.94;MQ0=0;MQRankSum=-0.55;QD=11.81;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM153A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393518    GT:AD:DP:GQ:PL    0/1:3,4:7:75.87:113,0,76
5    177302646    .    T    C    64.46    MQFilter40    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=21.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-423H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303154    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
5    177303277    rs146223109    T    C    34.60    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.52;MQ0=2;MQRankSum=0.922;QD=3.84;ReadPosRankSum=0.198;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-423H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303154    GT:AD:DP:GQ:PL    0/1:7,2:9:64.60:65,0,139
5    177305797    .    G    A    424.27    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=241;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.68;MQ0=226;QD=1.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-423H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303154    GT:AD:DP:GQ:PL    1/1:116,124:241:39.08:457,39,0
5    177309472    .    A    G    646.24    MQFilter40    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.513;DP=250;DS;Dels=0.0;FS=0.915;HRun=1;HaplotypeScore=1.7803;MQ=14.55;MQ0=99;MQRankSum=-0.754;QD=2.58;ReadPosRankSum=-0.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-423H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506082    GT:AD:DP:GQ:PL    0/1:116,133:250:99:676,0,718
5    177310717    rs139876295    A    G    1379.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.31;MQ0=29;QD=16.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-423H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502601    GT:AD:DP:GQ:PL    1/1:0,85:85:99:1412,132,0
5    177419967    rs1800197    C    T    88.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=8.08;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=A142T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177419236_177420048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308304    GT:AD:DP:GQ:PL    0/1:6,4:11:99:119,0,188
5    177422823    rs4072924    C    T    432.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.651;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.787;MQ=58.55;MQ0=0;MQRankSum=1.519;QD=27.01;ReadPosRankSum=-1.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308304    GT:AD:DP:GQ:PL    1/1:1,15:16:8.68:464,9,0
5    177422876    rs7445271    T    C    714.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=N20S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177422826_177423243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308304    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:748,57,0
5    177461971    rs139377481    C    A    228.24    MQFilter40    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.08;MQ0=23;MQRankSum=1.155;QD=4.31;ReadPosRankSum=-1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398106    GT:AD:DP:GQ:PL    0/1:44,9:53:99:258,0,683
5    177466530    rs62390465    G    C    135.25    MQFilter40    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.631;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.77;MQ0=13;MQRankSum=0.299;QD=3.3;ReadPosRankSum=-0.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504530    GT:AD:DP:GQ:PL    0/1:22,19:41:99:165,0,165
5    177466539    .    G    C    119.57    MQFilter40    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.923;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.47;MQ0=13;MQRankSum=1.508;QD=3.32;ReadPosRankSum=-0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504530    GT:AD:DP:GQ:PL    0/1:23,13:36:99:150,0,147
5    177466654    .    A    G    42.03    MQFilter40    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.0;MQ0=0;QD=14.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504530    GT:AD:DP:GQ:PL    1/1:0,3:3:8.99:74,9,0
5    177469412    rs6866401    T    C    81.27    MQFilter40    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.97;MQ0=3;MQRankSum=-2.383;QD=6.25;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504530    GT:AD:DP:GQ:PL    0/1:4,9:13:99:111,0,138
5    177473723    rs143727524    A    G    45.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=32.6;MQ0=0;QD=11.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398106    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:77,6,0
5    177473775    rs140796716    C    G    153.42    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.192;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=45.22;MQ0=0;MQRankSum=-1.517;QD=5.48;ReadPosRankSum=-0.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398106    GT:AD:DP:GQ:PL    0/1:18,10:28:99:183,0,590
5    177473834    .    G    A    195.95    MQFilter40    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DP=64;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=0.9665;MQ=32.72;MQ0=8;MQRankSum=-1.671;QD=3.06;ReadPosRankSum=-2.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398106    GT:AD:DP:GQ:PL    0/1:43,21:64:99:226,0,901
5    177473836    .    C    T    198.95    MQFilter40    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.791;DP=62;Dels=0.02;FS=2.156;HRun=0;HaplotypeScore=0.9665;MQ=31.76;MQ0=9;MQRankSum=-1.864;QD=3.16;ReadPosRankSum=-2.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398106    GT:AD:DP:GQ:PL    0/1:41,21:62:99:229,0,872
5    177473974    rs115843463    C    T    942.93    MQFilter40    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.979;DB;DP=154;Dels=0.0;FS=0.658;HRun=0;HaplotypeScore=0.9983;MQ=36.64;MQ0=3;MQRankSum=-8.307;QD=6.12;ReadPosRankSum=0.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511856    GT:AD:DP:GQ:PL    0/1:95,59:154:99:973,0,3244
5    177474003    rs184463105    C    T    663.38    MQFilter40    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=2.608;DB;DP=195;Dels=0.0;FS=11.097;HRun=0;HaplotypeScore=0.8667;MQ=29.32;MQ0=45;MQRankSum=-7.316;QD=3.4;ReadPosRankSum=-0.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511856    GT:AD:DP:GQ:PL    0/1:129,66:195:99:693,0,2887
5    177483154    rs9687038    T    A    800.27    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=46;Dels=0.0;FS=1.176;HRun=0;HaplotypeScore=0.734;MQ=59.09;MQ0=0;MQRankSum=0.513;QD=17.4;ReadPosRankSum=0.982;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM153C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506096    GT:AD:DP:GQ:PL    0/1:19,27:46:99:830,0,633
5    177546990    rs13163671    G    A    336.25    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.634;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=19.78;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274605    GT:AD:DP:GQ:PL    0/1:5,12:17:99:366,0,159
5    177547247    rs7719667    T    C    887.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=S133;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177547179_177547700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274605    GT:AD:DP:GQ:PL    1/1:0,27:28:72.22:921,72,0
5    177570759    rs6601218    T    C    1705.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=58.76;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502814    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1738,132,0
5    177574901    rs7380934    C    G    922.44    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.836;DB;DP=71;Dels=0.0;FS=12.847;HRun=0;HaplotypeScore=0.9973;MQ=59.41;MQ0=0;MQRankSum=-0.64;QD=12.99;ReadPosRankSum=0.432;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274606    GT:AD:DP:GQ:PL    0/1:38,33:71:99:952,0,1240
5    177580694    .    C    CG    515.93    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.194;DP=35;FS=6.463;HRun=2;HaplotypeScore=155.8533;IndelType=I;MQ=58.63;MQ0=0;MQRankSum=-0.573;QD=14.74;ReadPosRankSum=1.68;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_177580659_177580968;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHP2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000274606    GT:AD:DP:GQ:PL    0/1:20,15:35:99:555,0,495
5    177633116    rs3812089    A    G    1082.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308158    GT:AD:DP:GQ:PL    1/1:0,28:28:81.27:1115,81,0
5    177634401    rs7705458    T    C    151.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308158    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:185,15,0
5    177636571    rs2913752    C    T    116.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476487    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:149,12,0
5    177636990    rs150625763    CT    C    425.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=29.8309;IndelType=D;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476487    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:468,36,0
5    177637447    rs2913751    G    A    280.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476487    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:314,24,0
5    177642177    rs2913748    C    T    306.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355836    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:339,27,0
5    177649558    .    A    C    488.24    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.868;DP=54;Dels=0.0;FS=4.261;HRun=4;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=0.623;QD=9.04;ReadPosRankSum=-1.525;SNPEFF_AMINO_ACID_CHANGE=V242G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177649356_177649581;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308158    GT:AD:DP:GQ:PL    0/1:32,22:54:99:518,0,895
5    177658625    rs3833653    CG    C    369.70    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=3.199;DB;DP=25;FS=0.0;HRun=7;HaplotypeScore=68.1271;IndelType=D;MQ=61.29;MQ0=0;MQRankSum=0.425;QD=14.79;ReadPosRankSum=1.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308158    GT:AD:DP:GQ:PL    0/1:9,16:25:99:409,0,263
5    177658883    rs2973729    C    A    289.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308158    GT:AD:DP:GQ:PL    1/1:1,9:10:24.08:323,24,0
5    177659366    rs2913860    G    A    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGXT2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308158    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
5    177675217    rs2913851    C    T    2238.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_AMINO_ACID_CHANGE=A396;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177675193_177675255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2272,172,0
5    177676882    rs2913850    G    T    217.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
5    177679447    rs1549612    C    T    129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407622    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
5    177679654    rs2033200    C    T    163.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407622    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
5    177679680    rs2973751    T    C    88.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407622    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
5    177683011    rs890805    C    T    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,108
5    177683075    rs2335245    T    C    40.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:71,0,24
5    177683377    rs890802    T    C    167.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.66;MQ0=0;MQRankSum=2.054;QD=16.74;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=T251A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_177683354_177683398;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407622    GT:AD:DP:GQ:PL    0/1:4,6:10:60.71:197,0,61
5    177684022    rs2913848    C    T    44.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.12;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:74,0,36
5    177686815    rs2973747    C    A    527.05    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=-1.14;QD=14.24;ReadPosRankSum=0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    0/1:19,18:37:99:557,0,599
5    177688772    rs2973745    G    A    46.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=3.07;ReadPosRankSum=-1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    0/1:10,5:15:76.06:76,0,331
5    177715291    rs890801    G    A    5502.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.99;MQ0=0;MQRankSum=-1.649;QD=32.95;ReadPosRankSum=1.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:1,166:167:99:5503,403,0
5    177715302    rs5873603    CA    C    4772.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=170;FS=0.0;HRun=7;HaplotypeScore=1026.083;IndelType=D;MQ=60.5;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:14,156:170:99:4772,469,0
5    177715477    rs2913833    G    T    867.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:901,69,0
5    177715581    rs2913832    T    C    142.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=23.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:175,15,0
5    177717099    rs2973773    T    A    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
5    177717588    rs2973774    G    T    67.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:100,9,0
5    177717640    rs2913826    A    G    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL23A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390654    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
5    178035585    rs501721    G    A    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316308    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,110
5    178040919    rs560842    G    A    634.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520126    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:667,48,0
5    178139442    rs1132338    T    G    674.62    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.522;DB;DP=62;Dels=0.0;FS=0.985;HRun=1;HaplotypeScore=0.8321;MQ=53.69;MQ0=1;MQRankSum=-1.262;QD=10.88;ReadPosRankSum=0.051;SNPEFF_AMINO_ACID_CHANGE=S479;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178138593_178140622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335815    GT:AD:DP:GQ:PL    0/1:35,27:62:99:705,0,1041
5    178140090    rs1132336    C    T    949.37    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=67;Dels=0.0;FS=8.43;HRun=0;HaplotypeScore=0.734;MQ=59.66;MQ0=0;MQRankSum=0.32;QD=14.17;ReadPosRankSum=0.019;SNPEFF_AMINO_ACID_CHANGE=T263;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178138593_178140622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335815    GT:AD:DP:GQ:PL    0/1:35,32:67:99:979,0,1005
5    178152195    rs34981407    A    C    113    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=14.13;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518048    GT:AD:DP:GQ:PL    0/1:3,5:8:99:143,0,106
5    178154174    rs56185007    C    T    135.60    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=28;Dels=0.0;FS=2.782;HRun=0;HaplotypeScore=0.0;MQ=51.56;MQ0=0;MQRankSum=-3.058;QD=4.84;ReadPosRankSum=0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335815    GT:AD:DP:GQ:PL    0/1:17,11:28:99:166,0,576
5    178154175    rs56328282    A    G    138.61    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=26;Dels=0.0;FS=2.793;HRun=1;HaplotypeScore=0.0;MQ=50.85;MQ0=0;MQRankSum=-2.803;QD=5.33;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335815    GT:AD:DP:GQ:PL    0/1:15,11:26:99:169,0,549
5    178154189    rs71587678    T    TG    159.04    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;FS=0.0;HRun=3;HaplotypeScore=83.7215;IndelType=I;MQ=49.19;MQ0=0;MQRankSum=-3.419;QD=7.95;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335815    GT:AD:DP:GQ:PL    0/1:13,7:18:99:198,0,375
5    178181819    rs11249567    A    C    299.70    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.018;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.129;QD=8.56;ReadPosRankSum=-0.166;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-281O15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367003    GT:AD:DP:GQ:PL    0/1:20,14:34:99:330,0,666
5    178181835    rs11249568    C    T    383.50    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.257;DB;DP=38;Dels=0.0;FS=1.289;HRun=0;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=-0.636;QD=10.09;ReadPosRankSum=-1.197;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-281O15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367003    GT:AD:DP:GQ:PL    0/1:22,16:38:99:413,0,678
5    178208021    rs34178145    C    T    693.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.517;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.23;MQ0=0;MQRankSum=0.162;QD=11.01;ReadPosRankSum=-0.779;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AACSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503486    GT:AD:DP:GQ:PL    0/1:36,27:63:99:723,0,1118
5    178208025    rs11249572    T    C    2363.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=34.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AACSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503486    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2396,184,0
5    178208243    rs13170990    A    C    777.22    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=68;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9983;MQ=58.63;MQ0=0;MQRankSum=0.522;QD=11.43;ReadPosRankSum=0.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AACSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503486    GT:AD:DP:GQ:PL    0/1:37,31:68:99:807,0,1208
5    178208347    rs13189535    C    G    101.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.811;QD=7.26;ReadPosRankSum=-1.093;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AACSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503486    GT:AD:DP:GQ:PL    0/1:7,7:14:99:132,0,224
5    178208361    rs13188420    G    C    87.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=8.72;ReadPosRankSum=1.036;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AACSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503486    GT:AD:DP:GQ:PL    0/1:6,4:10:99:117,0,223
5    178358950    rs34499286    A    G    255.87    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.173;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.41;MQ0=0;MQRankSum=0.455;QD=6.56;ReadPosRankSum=1.46;SNPEFF_AMINO_ACID_CHANGE=K212;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178358238_178360213;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361362    GT:AD:DP:GQ:PL    0/1:27,12:39:99:286,0,781
5    178359136    rs961030    A    G    438    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.935;DB;DP=38;Dels=0.0;FS=5.048;HRun=0;HaplotypeScore=0.9789;MQ=59.39;MQ0=0;MQRankSum=-1.387;QD=11.53;ReadPosRankSum=-1.63;SNPEFF_AMINO_ACID_CHANGE=Q274;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178358238_178360213;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361362    GT:AD:DP:GQ:PL    0/1:21,17:38:99:468,0,729
5    178369673    rs10060764    T    C    62.39    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=8.91;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF454;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320129    GT:AD:DP:GQ:PL    0/1:2,5:7:68.42:92,0,68
5    178369985    rs115701134    C    T    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF454;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320129    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:73,0,24
5    178391902    rs12719860    A    C    1767.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=D166A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178391656_178393434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF454;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320129    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1801,132,0
5    178395850    rs11741688    G    C    1962.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=R1039G;SNPEFF_CODON_CHANGE=Cgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178395730_178395920;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319065    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1996,156,0
5    178396742    rs4700759    G    C    562.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF454;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320129    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:596,45,0
5    178408530    rs114396608    C    T    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517717    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,69
5    178408544    rs17078852    G    C    34.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.74;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517717    GT:AD:DP:GQ:PL    0/1:4,2:6:64.41:64,0,133
5    178408602    rs17078853    T    G    76.42    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=5.88;ReadPosRankSum=-0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517717    GT:AD:DP:GQ:PL    0/1:8,5:13:99:106,0,299
5    178408861    rs114970739    C    T    549.59    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.915;DB;DP=59;Dels=0.0;FS=3.088;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.092;QD=9.32;ReadPosRankSum=1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518082    GT:AD:DP:GQ:PL    0/1:38,21:59:99:580,0,1208
5    178409811    rs17078862    G    A    178.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=14.91;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518082    GT:AD:DP:GQ:PL    0/1:6,6:12:99:209,0,180
5    178409856    rs2071248    C    T    356.55    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=23;Dels=0.0;FS=2.291;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=1.693;QD=15.5;ReadPosRankSum=0.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518082    GT:AD:DP:GQ:PL    0/1:11,12:23:99:387,0,368
5    178409865    rs17078872    T    G    338.27    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.014;DB;DP=27;Dels=0.0;FS=4.869;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-2.305;QD=12.53;ReadPosRankSum=1.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518082    GT:AD:DP:GQ:PL    0/1:14,13:27:99:368,0,494
5    178410151    rs2071247    C    T    255.65    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.623;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.377;QD=8.82;ReadPosRankSum=1.279;SNPEFF_AMINO_ACID_CHANGE=T732;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178409911_178410222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231188    GT:AD:DP:GQ:PL    0/1:20,9:29:99:286,0,535
5    178410213    rs17078877    T    C    72.64    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.829;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.817;QD=3.46;ReadPosRankSum=-1.44;SNPEFF_AMINO_ACID_CHANGE=M712V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178409911_178410222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231188    GT:AD:DP:GQ:PL    0/1:15,6:21:99:103,0,465
5    178410234    rs76561626    A    G    45.99    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.102;QD=1.84;ReadPosRankSum=0.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518082    GT:AD:DP:GQ:PL    0/1:20,5:25:75.98:76,0,577
5    178412273    rs35715923    T    C    1137.79    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.976;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.19;MQ0=0;MQRankSum=1.11;QD=12.93;ReadPosRankSum=1.379;SNPEFF_AMINO_ACID_CHANGE=V897;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178412268_178412285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319065    GT:AD:DP:GQ:PL    0/1:48,40:88:99:1168,0,1300
5    178412405    rs71699270    T    TA    96.64    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=21;FS=0.0;HRun=15;HaplotypeScore=198.0048;IndelType=I;MQ=51.77;MQ0=0;MQRankSum=0.935;QD=4.6;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518082    GT:AD:DP:GQ:PL    0/1:12,8:21:59.21:136,0,59
5    178412501    rs9329061    G    A    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518082    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
5    178413816    rs2256966    T    C    151.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=16;Dels=0.0;FS=9.89;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.312;QD=9.45;ReadPosRankSum=0.935;SNPEFF_AMINO_ACID_CHANGE=Q636R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178413131_178413984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319065    GT:AD:DP:GQ:PL    0/1:9,6:16:99:181,0,237
5    178413947    rs11746675    T    C    56.92    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=12;Dels=0.0;FS=2.817;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.74;QD=4.74;ReadPosRankSum=-0.925;SNPEFF_AMINO_ACID_CHANGE=G464;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178413839_178413984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231188    GT:AD:DP:GQ:PL    0/1:9,3:12:86.92:87,0,276
5    178414532    rs10464074    A    G    191.76    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=9.59;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231188    GT:AD:DP:GQ:PL    0/1:11,8:20:99:222,0,370
5    178414565    rs2645340    C    T    135    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=9.64;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231188    GT:AD:DP:GQ:PL    0/1:9,5:14:99:165,0,252
5    178415982    rs4701014    A    G    326.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=27.2;SNPEFF_AMINO_ACID_CHANGE=T436;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178415936_178416136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231188    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:359,27,0
5    178416063    rs2645339    G    A    137.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=12;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.0;MQ=56.43;MQ0=0;MQRankSum=1.031;QD=11.43;ReadPosRankSum=-1.532;SNPEFF_AMINO_ACID_CHANGE=Y409;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178415936_178416136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231188    GT:AD:DP:GQ:PL    0/1:6,6:12:99:167,0,145
5    178416288    rs2071246    G    A    378.95    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.477;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=-0.462;QD=16.48;ReadPosRankSum=0.215;SNPEFF_AMINO_ACID_CHANGE=D377;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178416266_178416406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000231188    GT:AD:DP:GQ:PL    0/1:11,12:23:99:409,0,322
5    178418302    rs77690756    T    TG    489.71    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=32;FS=0.0;HRun=6;HaplotypeScore=108.7009;IndelType=I;MQ=60.47;MQ0=0;MQRankSum=-1.129;QD=15.3;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519175    GT:AD:DP:GQ:PL    0/1:14,18:32:99:529,0,279
5    178419396    rs74329491    A    AC    431.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=5;HaplotypeScore=21.863;IndelType=I;MQ=58.98;MQ0=0;QD=35.98;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_5_178418611_178419432;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319065    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:474,36,0
5    178503338    rs4701030    A    C    697.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315475    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:731,54,0
5    178503640    rs4700780    C    T    1461.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315475    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1494,111,0
5    178504338    rs6601010    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    178507069    rs1445846    T    C    1331.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=29.58;SNPEFF_AMINO_ACID_CHANGE=F546L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178505684_178510538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315475    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1364,111,0
5    178507090    rs1445845    G    A    1381.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_AMINO_ACID_CHANGE=E553K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178505684_178510538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315475    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1414,102,0
5    178507270    rs1445844    A    G    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF354C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315475    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
5    178540656    rs10479525    T    G    133.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522937    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
5    178548514    rs2303640    G    C    211.25    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.087;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.4;MQ0=0;MQRankSum=-0.477;QD=8.13;ReadPosRankSum=1.252;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251582    GT:AD:DP:GQ:PL    0/1:17,9:26:99:241,0,457
5    178553185    rs2303643    G    A    1029.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251582    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1062,78,0
5    178634547    rs66565583    G    A    1054.84    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=3.985;DB;DP=74;Dels=0.0;FS=5.852;HRun=0;HaplotypeScore=0.9789;MQ=59.38;MQ0=0;MQRankSum=-1.834;QD=14.25;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=H286;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178634514_178634716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251582    GT:AD:DP:GQ:PL    0/1:35,38:74:99:1085,0,955
5    178634619    rs423552    C    T    3705.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.8;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=A262;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178634514_178634716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251582    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3706,271,0
5    178700243    rs7719123    C    T    167.51    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=23.93;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251582    GT:AD:DP:GQ:PL    0/1:1,6:7:16.73:197,0,17
5    178770751    .    G    C    90.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8273;MQ=55.21;MQ0=0;MQRankSum=-0.361;QD=9.05;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251582    GT:AD:DP:GQ:PL    0/1:5,5:10:99:120,0,146
5    178770759    rs2271213    C    G    115.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.453;QD=11.5;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251582    GT:AD:DP:GQ:PL    0/1:5,5:10:99:145,0,145
5    178770981    rs2271212    A    G    327.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.26;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=59.03;MQ0=0;MQRankSum=0.722;QD=13.63;ReadPosRankSum=0.26;SNPEFF_AMINO_ACID_CHANGE=S107;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_178770768_178771162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251582    GT:AD:DP:GQ:PL    0/1:12,12:24:99:357,0,305
5    178951598    rs4701188    G    A    1176.78    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=105;Dels=0.0;FS=2.914;HRun=1;HaplotypeScore=1.782;MQ=41.43;MQ0=14;MQRankSum=-0.627;QD=11.21;ReadPosRankSum=-0.505;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-798K23.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521868    GT:AD:DP:GQ:PL    0/1:56,49:105:99:1207,0,1055
5    178952039    rs35678620    G    T    272.25    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.767;DB;DP=29;Dels=0.0;FS=13.9;HRun=0;HaplotypeScore=0.0;MQ=56.02;MQ0=0;MQRankSum=0.069;QD=9.39;ReadPosRankSum=0.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-798K23.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521868    GT:AD:DP:GQ:PL    0/1:19,10:29:99:302,0,503
5    178986987    rs12658664    C    T    567.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319449    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:600,45,0
5    178989386    rs28611242    A    G    358.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319449    GT:AD:DP:GQ:PL    1/1:0,12:12:36.06:392,36,0
5    178989473    rs28510162    T    G    1555.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319449    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1588,126,0
5    178996131    rs71591426    C    CAG    499.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=52.7164;IndelType=I;MQ=54.32;MQ0=1;QD=38.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503514    GT:AD:DP:GQ:PL    1/1:3,10:12:27.09:541,27,0
5    178996435    rs11743261    A    G    2081.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503514    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2115,169,0
5    179012968    rs13361148    A    G    571.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=27.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319449    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:605,51,0
5    179016664    rs6895677    A    T    1143.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319449    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1176,87,0
5    179021982    rs28685239    G    A    820.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509797    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:854,66,0
5    179025550    rs4701136    A    G    863.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509797    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:896,69,0
5    179032755    rs6877888    C    T    529.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=31.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319449    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:563,42,0
5    179033094    rs4701139    G    A    159.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319449    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
5    179036357    rs7448707    G    A    1100.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=34.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329433    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1134,87,0
5    179042971    rs4376229    A    G    373    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503105    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:406,30,0
5    179043041    rs4256313    C    G    1052.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503105    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1086,84,0
5    179043075    rs4515257    T    C    1573.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.89;MQ0=0;QD=37.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503105    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1606,120,0
5    179044292    rs4131080    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503105    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    179045142    rs4701143    G    A    2674.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503664    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2708,202,0
5    179050188    rs1136267    A    C    508.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393432    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:542,42,0
5    179069468    rs62405726    A    G    284.97    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.481;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.93;MQ0=1;MQRankSum=-2.587;QD=9.5;ReadPosRankSum=0.376;SNPEFF_AMINO_ACID_CHANGE=W236R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179069327_179069490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C5orf60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448248    GT:AD:DP:GQ:PL    0/1:11,19:30:99:315,0,310
5    179069551    rs12519906    G    A    234.36    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.438;DB;DP=36;Dels=0.0;FS=5.871;HRun=1;HaplotypeScore=0.0;MQ=44.37;MQ0=1;MQRankSum=1.758;QD=6.51;ReadPosRankSum=0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C5orf60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503358    GT:AD:DP:GQ:PL    0/1:25,11:36:99:264,0,673
5    179078940    rs6882398    T    C    3162.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.2257;MQ=44.17;MQ0=3;QD=28.24;SNPEFF_AMINO_ACID_CHANGE=S141;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179078574_179079294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC136604.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425471    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3196,247,0
5    179105699    .    T    C    306.37    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DP=21;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.9958;MQ=59.11;MQ0=0;MQRankSum=0.88;QD=14.59;ReadPosRankSum=-0.246;SNPEFF_AMINO_ACID_CHANGE=N205S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179105584_179106266;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBY3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376974    GT:AD:DP:GQ:PL    0/1:11,10:21:99:336,0,286
5    179132612    rs7735702    T    A    902.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CANX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247461    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:935,72,0
5    179135071    rs10063824    T    C    300.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CANX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507307    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:333,24,0
5    179135815    rs6893300    C    A    117.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CANX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502296    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
5    179136137    rs72809766    C    T    104.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CANX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502296    GT:AD:DP:GQ:PL    1/1:0,9:9:17.92:137,18,0
5    179136138    rs6601068    A    G    103.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CANX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502296    GT:AD:DP:GQ:PL    1/1:0,9:9:17.92:136,18,0
5    179153797    rs7734102    C    T    1786.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CANX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505090    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1819,135,0
5    179193598    rs3797776    C    T    1492.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_AMINO_ACID_CHANGE=S529;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179192327_179193742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292599    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1526,120,0
5    179201847    rs6895902    G    A    2472.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=S1007N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179200896_179204287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292599    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2506,184,0
5    179218842    rs55654737    G    A    2145.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=59.64;MQ0=0;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=G753S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179218765_179218871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376951    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2179,160,0
5    179227154    rs72807339    G    A    1111.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.347;QD=30.88;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LTC4S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292596    GT:AD:DP:GQ:PL    1/1:1,35:36:56.64:1145,57,0
5    179259842    rs2450484    G    C    66.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292586    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
5    179260009    rs2241349    G    A    975.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=59.4;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292586    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:1008,78,0
5    179260153    rs4935    C    T    832.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=D148;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179260032_179260246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SQSTM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454378    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:865,66,0
5    179260213    rs4797    G    A    420.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_AMINO_ACID_CHANGE=R168;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179260032_179260246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SQSTM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454378    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:454,36,0
5    179260484    rs137950066    G    A    44.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292586    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:75,0,25
5    179260494    rs155787    G    A    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292586    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
5    179261001    rs248237    G    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292586    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
5    179264731    rs10277    T    C    1114.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.45;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=Q176R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179264266_179264885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376931    GT:AD:DP:GQ:PL    1/1:0,33:33:90.25:1148,90,0
5    179264915    rs1065154    G    T    882.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.17;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519208    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:915,69,0
5    179267949    rs248248    T    C    159.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.62;SNPEFF_AMINO_ACID_CHANGE=R154G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179267872_179267959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292586    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:192,15,0
5    179280379    rs1650893    T    C    1285.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=59.56;MQ0=0;QD=30.6;SNPEFF_AMINO_ACID_CHANGE=Q42R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179280378_179280437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292586    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1318,99,0
5    179321657    rs17079780    C    T    650.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.71;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355235    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:683,51,0
5    179405144    rs27018    A    G    157.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.208;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.368;QD=9.84;ReadPosRankSum=-0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261947    GT:AD:DP:GQ:PL    0/1:8,8:16:99:187,0,290
5    179405399    rs27019    C    G    134.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261947    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
5    179407229    rs28011    C    T    1190.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261947    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1223,90,0
5    179528999    rs62405050    C    T    132.37    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=27;Dels=0.0;FS=2.764;HRun=1;HaplotypeScore=0.0;MQ=53.71;MQ0=0;MQRankSum=-3.194;QD=4.9;ReadPosRankSum=-1.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361132    GT:AD:DP:GQ:PL    0/1:19,8:27:99:162,0,637
5    179529124    rs7725201    G    A    950.32    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=2.087;DB;DP=46;Dels=0.0;FS=1.311;HRun=0;HaplotypeScore=0.9332;MQ=56.92;MQ0=0;MQRankSum=2.064;QD=20.66;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=Y290;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179529071_179529143;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522500    GT:AD:DP:GQ:PL    0/1:16,30:46:99:980,0,438
5    179545562    rs62405054    C    G    131.19    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.166;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.955;QD=7.29;ReadPosRankSum=0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519883    GT:AD:DP:GQ:PL    0/1:11,7:18:99:161,0,298
5    179555190    rs13354032    T    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361132    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    179555407    rs13354066    T    C    979.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361132    GT:AD:DP:GQ:PL    1/1:0,32:32:78.22:1013,78,0
5    179555654    rs6895192    C    T    126.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361132    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
5    179565071    rs4700878    G    C    303.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361132    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:336,27,0
5    179565136    rs4700715    C    A    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGEF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361132    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
5    179663614    rs6601104    C    T    122.90    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=7.68;ReadPosRankSum=-0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397072    GT:AD:DP:GQ:PL    0/1:11,5:16:99:153,0,394
5    179665201    rs56333381    C    T    157.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7803;MQ=60.0;MQ0=0;MQRankSum=-0.627;QD=10.47;ReadPosRankSum=0.865;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393362    GT:AD:DP:GQ:PL    0/1:6,8:15:99:187,0,209
5    179665572    rs4700729    A    G    79.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393362    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
5    179667806    rs6894217    G    A    491.10    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=1.169;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.167;QD=20.46;ReadPosRankSum=0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393362    GT:AD:DP:GQ:PL    0/1:7,16:24:99:521,0,198
5    179667933    rs6895740    C    G    2223.80    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.227;DB;DP=148;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-1.115;QD=15.03;ReadPosRankSum=0.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393362    GT:AD:DP:GQ:PL    0/1:76,71:148:99:2254,0,2281
5    179691951    rs34234996    ACTT    A    177.83    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=44.7868;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=-1.031;QD=14.82;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343111    GT:AD:DP:GQ:PL    0/1:7,5:12:99:217,0,312
5    179728707    rs4700931    T    C    189.83    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-1.115;QD=9.99;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253778    GT:AD:DP:GQ:PL    0/1:11,8:19:99:220,0,394
5    179729328    rs1035412    C    T    233.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.76;MQ0=0;MQRankSum=-0.556;QD=14.61;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253778    GT:AD:DP:GQ:PL    0/1:8,8:16:99:264,0,172
5    179729519    rs1035411    A    G    755.88    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.227;DB;DP=52;Dels=0.0;FS=1.051;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.136;QD=14.54;ReadPosRankSum=0.531;SNPEFF_AMINO_ACID_CHANGE=I636;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179729423_179729584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253778    GT:AD:DP:GQ:PL    0/1:25,27:52:99:786,0,693
5    179729625    rs2303005    A    G    264.61    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.622;DB;DP=32;Dels=0.0;FS=10.207;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.781;QD=8.27;ReadPosRankSum=-0.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253778    GT:AD:DP:GQ:PL    0/1:18,14:32:99:295,0,518
5    179731635    rs888922    C    G    386.50    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.888;QD=11.71;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253778    GT:AD:DP:GQ:PL    0/1:17,16:33:99:416,0,578
5    179734139    rs11741142    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253778    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
5    179734312    rs3763131    T    C    502.08    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.597;DB;DP=28;Dels=0.0;FS=6.262;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-2.546;QD=17.93;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253778    GT:AD:DP:GQ:PL    0/1:9,19:28:99:532,0,260
5    179743731    rs2303008    G    A    219.17    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=16.86;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510122    GT:AD:DP:GQ:PL    0/1:5,8:13:99:249,0,159
5    179751111    rs3828686    A    G    620.91    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.777;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.798;QD=13.21;ReadPosRankSum=-1.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253778    GT:AD:DP:GQ:PL    0/1:24,23:47:99:651,0,687
5    179763398    rs6891083    T    G    1512.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503228    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1546,129,0
5    179765467    rs55946431    C    T    141.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.198;QD=17.69;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503228    GT:AD:DP:GQ:PL    0/1:2,6:8:60.01:171,0,60
5    179980302    rs10516143    T    A    489.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNOT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507016    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:523,39,0
5    179980527    rs11738129    A    G    416.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNOT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507016    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:449,36,0
5    179991841    rs6874985    A    G    315.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNOT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502447    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:348,27,0
5    179996111    rs6877400    C    T    1189.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_AMINO_ACID_CHANGE=S343;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_179996110_179996340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNOT6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261951    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1223,90,0
5    179998454    rs13164597    C    T    726.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNOT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504343    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:760,60,0
5    180017927    rs117170752    A    C    60.38    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292641    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:90,0,29
5    180036871    rs2242219    C    G    753.72    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.767;DB;DP=60;Dels=0.0;FS=1.131;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.216;QD=12.56;ReadPosRankSum=-0.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510000    GT:AD:DP:GQ:PL    0/1:26,34:60:99:784,0,813
5    180038248    rs71593406    T    TC    208.26    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.062;DB;DP=29;FS=0.0;HRun=4;HaplotypeScore=76.7914;IndelType=I;MQ=59.2;MQ0=0;MQRankSum=-1.195;QD=7.18;ReadPosRankSum=1.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510000    GT:AD:DP:GQ:PL    0/1:21,8:29:99:247,0,560
5    180038545    rs744283    A    G    92.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=9.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510000    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,151
5    180040918    rs2242217    G    A    70.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=14.1;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512795    GT:AD:DP:GQ:PL    0/1:2,3:5:60.62:101,0,61
5    180041001    rs421662    G    C    684.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=31.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512795    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:717,60,0
5    180041008    rs366388    T    C    905.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512795    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:939,72,0
5    180041208    rs659268    T    C    334.08    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.222;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5781;MQ=60.78;MQ0=0;MQRankSum=0.886;QD=10.12;ReadPosRankSum=2.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:17,16:33:99:364,0,439
5    180041274    rs2927582    T    G    144.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9972;MQ=62.82;MQ0=0;QD=16.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    1/1:0,5:9:15.04:178,15,0
5    180043388    rs1130378    G    A    359.84    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.677;DB;DP=36;Dels=0.0;FS=3.017;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.633;QD=10.0;ReadPosRankSum=1.769;SNPEFF_AMINO_ACID_CHANGE=P104;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180043367_180043489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512795    GT:AD:DP:GQ:PL    0/1:22,14:36:99:390,0,694
5    180046209    rs446003    C    T    153.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.387;QD=12.77;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376868    GT:AD:DP:GQ:PL    0/1:6,6:12:99:183,0,155
5    180046344    rs448012    G    C    311.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=20;Dels=0.0;FS=1.952;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=-1.582;QD=15.55;ReadPosRankSum=-0.116;SNPEFF_AMINO_ACID_CHANGE=H890Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180046253_180046366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:8,12:20:99:341,0,235
5    180046426    rs70973949    C    CTGGCCGCTTAGCTAAGGCACAG    1878.82    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=148.8413;IndelType=I;MQ=39.96;MQ0=0;MQRankSum=-1.733;QD=187.88;ReadPosRankSum=0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376868    GT:AD:DP:GQ:PL    0/1:4,3:10:99:1918,0,196
5    180046492    rs67637889    CAG    C    344.38    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=17;FS=2.197;HRun=0;HaplotypeScore=78.3519;IndelType=D;MQ=54.69;MQ0=0;MQRankSum=-1.317;QD=20.26;ReadPosRankSum=0.537;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000376868    GT:AD:DP:GQ:PL    0/1:8,9:17:99:383,0,332
5    180047412    rs382266    T    C    70.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=7.85;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424276    GT:AD:DP:GQ:PL    0/1:6,3:9:99:101,0,180
5    180047863    rs423086    C    G    315.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424276    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:348,27,0
5    180048035    rs2242215    T    C    203.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=12;Dels=0.0;FS=3.09;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=16.94;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:4,8:12:99:233,0,109
5    180048056    rs2242214    C    T    245.38    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=17.53;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:4,10:14:99:275,0,118
5    180048986    rs10635355    G    GCCTC    555.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=30.9645;IndelType=I;MQ=58.24;MQ0=0;QD=55.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    1/1:2,8:10:24.08:597,24,0
5    180049618    rs2242209    A    G    122.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=13.67;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:3,6:9:86.34:153,0,86
5    180049907    rs2242208    G    A    371.36    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.404;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.0;QD=23.21;ReadPosRankSum=0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:3,13:16:66.17:401,0,66
5    180049926    rs113248876    CCA    C    268.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=59.8375;IndelType=D;MQ=57.39;MQ0=0;QD=29.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    1/1:3,6:9:21.07:311,21,0
5    180053090    rs56401579    G    A    970.88    PASS    AB=0.34;AC=1;AF=0.50;AN=2;BaseQRankSum=3.116;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-1.265;QD=20.23;ReadPosRankSum=1.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502293    GT:AD:DP:GQ:PL    0/1:16,31:48:99:1001,0,394
5    180053097    rs56193546    C    T    1061.26    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=1.857;DB;DP=51;Dels=0.0;FS=2.829;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.599;QD=20.81;ReadPosRankSum=0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502293    GT:AD:DP:GQ:PL    0/1:16,35:51:99:1091,0,434
5    180053307    rs402647    A    G    959.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.14;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502293    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:992,75,0
5    180055862    rs383985    T    C    133.35    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=-0.143;QD=7.41;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502293    GT:AD:DP:GQ:PL    0/1:5,6:18:99:163,0,165
5    180056044    rs13359473    G    A    632.03    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.108;DB;DP=38;Dels=0.0;FS=7.216;HRun=0;HaplotypeScore=3.4207;MQ=58.78;MQ0=0;MQRankSum=-0.882;QD=16.63;ReadPosRankSum=0.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513527    GT:AD:DP:GQ:PL    0/1:16,22:38:99:662,0,415
5    180056620    rs414348    G    A    191.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513527    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:224,18,0
5    180057231    rs3736061    C    A    95.31    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.69;MQ0=0;MQRankSum=-0.361;QD=9.53;ReadPosRankSum=1.881;SNPEFF_AMINO_ACID_CHANGE=L169;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180057225_180057337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:5,4:10:99:125,0,124
5    180057356    rs56188706    C    G    37.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:3,2:5:67.38:67,0,81
5    180057504    rs12719871    G    A    276.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=18.42;ReadPosRankSum=-1.909;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:5,10:15:99:306,0,107
5    180057876    rs6859866    C    T    105.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=11.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    0/1:4,5:9:99:135,0,110
5    180058008    rs307820    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261937    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
5    180165983    rs2054696    G    C    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=1.9997;MQ=65.19;MQ0=0;QD=10.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2Y1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307832    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:74,6,0
5    180166461    rs10464105    C    G    3666.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_AMINO_ACID_CHANGE=V200L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180166042_180167099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2Y1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307832    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3666,274,0
5    180167197    rs6879842    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2Y1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307832    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
5    180218668    rs634501    A    G    754.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=26.03;SNPEFF_AMINO_ACID_CHANGE=L292P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180217548_180219386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452920    GT:AD:DP:GQ:PL    1/1:0,29:29:66.19:788,66,0
5    180276402    rs168726    C    T    3669.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=35.63;SNPEFF_AMINO_ACID_CHANGE=R296K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180275792_180276893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZFP62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405851    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3670,280,0
5    180326571    rs2619738    T    A    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231229    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:75,0,33
5    180326575    rs113292119    G    A    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.96;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231229    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:69,0,34
5    180338300    rs2276994    G    A    2054.88    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.089;DB;DP=187;Dels=0.0;FS=1.33;HRun=0;HaplotypeScore=0.9995;MQ=59.75;MQ0=0;MQRankSum=-0.415;QD=10.99;ReadPosRankSum=-2.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231229    GT:AD:DP:GQ:PL    0/1:110,77:187:99:2085,0,3439
5    180338368    rs2276995    A    G    2508.27    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.86;DB;DP=226;DS;Dels=0.0;FS=5.65;HRun=0;HaplotypeScore=0.8321;MQ=59.59;MQ0=0;MQRankSum=1.128;QD=11.1;ReadPosRankSum=1.12;SNPEFF_AMINO_ACID_CHANGE=T143A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180338339_180338614;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000231229    GT:AD:DP:GQ:PL    0/1:126,100:226:99:2538,0,3940
5    180374387    rs7724616    G    A    759.68    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.44;QD=14.33;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231229    GT:AD:DP:GQ:PL    0/1:28,25:53:99:790,0,951
5    180374534    rs3733756    G    A    3595.06    PASS    AB=0.445;AC=1;AF=0.50;AN=2;BaseQRankSum=6.371;DB;DP=209;Dels=0.0;FS=0.521;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=1.205;QD=17.2;ReadPosRankSum=0.845;SNPEFF_AMINO_ACID_CHANGE=S107;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180374512_180374625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400707    GT:AD:DP:GQ:PL    0/1:93,116:209:99:3595,0,2555
5    180374898    rs7711990    A    G    788.13    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.927;QD=15.16;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000231229    GT:AD:DP:GQ:PL    0/1:28,24:52:99:818,0,973
5    180375643    .    A    G    46.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=42.03;MQ0=0;MQRankSum=-0.937;QD=6.63;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514448    GT:AD:DP:GQ:PL    0/1:4,3:7:76.40:76,0,131
5    180375672    rs138661701    C    G    55.27    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=9;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=27.19;MQ0=4;MQRankSum=0.358;QD=6.14;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514448    GT:AD:DP:GQ:PL    0/1:5,4:9:55.27:85,0,55
5    180429826    rs74331184    G    A    1177.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342868    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1211,87,0
5    180430797    rs72494581    T    C    1918.33    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=4.709;DB;DP=154;Dels=0.0;FS=2.602;HRun=1;HaplotypeScore=0.8321;MQ=57.27;MQ0=1;MQRankSum=1.377;QD=12.46;ReadPosRankSum=0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342868    GT:AD:DP:GQ:PL    0/1:81,73:154:99:1948,0,2555
5    180430869    rs80267416    G    A    2732.41    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=4.289;DB;DP=246;Dels=0.0;FS=3.735;HRun=0;HaplotypeScore=2.4445;MQ=56.0;MQ0=8;MQRankSum=-0.785;QD=11.11;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=A197;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180430856_180430984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376852    GT:AD:DP:GQ:PL    0/1:132,113:246:99:2762,0,3908
5    180431169    rs55823201    C    G    102.38    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=14;Dels=0.0;FS=7.068;HRun=0;HaplotypeScore=0.0;MQ=35.66;MQ0=3;MQRankSum=-1.036;QD=7.31;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342868    GT:AD:DP:GQ:PL    0/1:6,8:14:95.98:132,0,96
5    180432416    rs7726150    C    T    792.99    MQFilter40    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=107;Dels=0.0;FS=4.707;HRun=0;HaplotypeScore=0.9832;MQ=33.46;MQ0=33;MQRankSum=1.166;QD=7.41;ReadPosRankSum=0.186;SNPEFF_AMINO_ACID_CHANGE=P281;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180432334_180433711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376852    GT:AD:DP:GQ:PL    0/1:53,54:107:99:823,0,983
5    180472419    rs146683741    TC    T    241.03    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.515;DB;DP=21;FS=0.0;HRun=5;HaplotypeScore=85.9546;IndelType=D;MQ=59.42;MQ0=0;MQRankSum=0.718;QD=11.48;ReadPosRankSum=-1.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327705    GT:AD:DP:GQ:PL    0/1:11,10:21:99:280,0,350
5    180472498    rs28677846    C    T    509.30    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.704;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.21;MQ0=0;MQRankSum=1.242;QD=13.06;ReadPosRankSum=-0.278;SNPEFF_AMINO_ACID_CHANGE=D3;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180472467_180472598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327705    GT:AD:DP:GQ:PL    0/1:18,20:39:99:539,0,611
5    180472513    rs6894087    A    G    432.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.72;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.64;MQ0=0;MQRankSum=0.441;QD=10.81;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=P8;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180472467_180472598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327705    GT:AD:DP:GQ:PL    0/1:20,20:40:99:462,0,606
5    180477449    rs7702426    C    G    213.80    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.122;QD=12.58;ReadPosRankSum=1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513424    GT:AD:DP:GQ:PL    0/1:10,7:17:99:244,0,273
5    180482795    rs3885614    A    T    465.91    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=39;Dels=0.0;FS=1.725;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=11.95;ReadPosRankSum=-0.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491209    GT:AD:DP:GQ:PL    0/1:19,20:39:99:496,0,544
5    180482899    rs3885615    C    T    561.20    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.01;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;MQRankSum=0.85;QD=11.0;ReadPosRankSum=0.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491209    GT:AD:DP:GQ:PL    0/1:27,24:51:99:591,0,748
5    180486785    rs10068763    G    C    153.54    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=14;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;MQRankSum=1.461;QD=10.97;ReadPosRankSum=-1.134;SNPEFF_AMINO_ACID_CHANGE=G511R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180486237_180488523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327705    GT:AD:DP:GQ:PL    0/1:6,7:14:99:184,0,170
5    180486841    rs10054109    C    T    188.19    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=20.91;ReadPosRankSum=-1.666;SNPEFF_AMINO_ACID_CHANGE=D529;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180486237_180488523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327705    GT:AD:DP:GQ:PL    0/1:2,7:9:45.49:218,0,45
5    180582604    rs2546423    A    G    3893.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.45;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=H221R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_5_180581943_180582890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2V2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328275    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3894,295,0
5    180582980    rs7380309    G    A    214.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2V2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328275    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
5    180626242    rs76492548    G    A    329.97    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.18;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.07;QD=11.78;ReadPosRankSum=0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334421    GT:AD:DP:GQ:PL    0/1:16,12:28:99:360,0,536
5    180666706    rs254445    G    T    104.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GNB2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456394    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:137,12,0
5    180687907    rs114579724    C    A    63.58    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=2.817;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.817;QD=4.89;ReadPosRankSum=0.437;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRIM52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514805    GT:AD:DP:GQ:PL    0/1:8,5:13:93.58:94,0,233
6    312023    rs1342789    C    T    326.32    HaplotypeScoreFilter13    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.225;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.5311;MQ=52.24;MQ0=0;MQRankSum=2.817;QD=17.17;ReadPosRankSum=1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:9,10:19:99:356,0,123
6    312029    rs144020998    TAATG    T    352.07    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.512;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=115.3612;IndelType=D;MQ=53.91;MQ0=0;MQRankSum=-1.203;QD=19.56;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:10,8:18:99:391,0,689
6    335175    rs2671431    A    T    2132.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2165,172,0
6    335251    rs3757305    T    C    115.16    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.788;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.89;MQ0=0;MQRankSum=-0.76;QD=5.48;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:13,8:21:99:145,0,453
6    335253    rs3757306    T    C    155.85    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.78;MQ0=0;MQRankSum=1.225;QD=8.2;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:12,7:19:99:186,0,412
6    335268    rs4959733    C    T    130.43    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.163;QD=8.15;ReadPosRankSum=1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:10,6:16:99:160,0,355
6    348051    rs1877172    A    G    916.93    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.385;DB;DP=60;Dels=0.0;FS=1.385;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.606;QD=15.28;ReadPosRankSum=-0.547;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:31,29:60:99:947,0,974
6    348080    rs2797333    A    G    2850.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.75;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2883,244,0
6    348906    rs11242812    G    A    843.32    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.77;DB;DP=55;Dels=0.0;FS=6.984;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-1.399;QD=15.33;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:24,31:55:99:873,0,749
6    349016    rs11242813    C    T    274.37    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=21.11;ReadPosRankSum=0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:3,10:13:49.02:304,0,49
6    350829    rs1129085    G    A    1060.38    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.818;DB;DP=70;Dels=0.0;FS=2.086;HRun=0;HaplotypeScore=0.7887;MQ=59.67;MQ0=0;MQRankSum=1.236;QD=15.15;ReadPosRankSum=1.357;SNPEFF_AMINO_ACID_CHANGE=P172;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_350822_351355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1090,0,875
6    350940    rs72551074    T    TA    365.66    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.088;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=76.2877;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.215;QD=11.08;ReadPosRankSum=1.42;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344450    GT:AD:DP:GQ:PL    0/1:22,11:33:99:405,0,649
6    407656    rs1131442    G    A    106.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.44;MQ0=0;QD=13.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493114    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:139,12,0
6    497520    rs6909878    G    C    2900.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2934,214,0
6    554045    rs112075342    C    CT    132.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=12;HaplotypeScore=31.3132;IndelType=I;MQ=58.24;MQ0=0;QD=18.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    1/1:1,6:7:18.03:175,18,0
6    556106    rs2064302    G    A    307.43    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.122;QD=18.08;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    0/1:7,10:17:99:337,0,231
6    556147    rs2476844    C    T    297.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:330,24,0
6    556655    rs2245544    C    T    206.98    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.27;QD=12.94;ReadPosRankSum=2.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    0/1:9,7:16:99:237,0,315
6    564145    rs2277095    A    G    577.34    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.742;DB;DP=36;Dels=0.0;FS=1.511;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.093;QD=16.04;ReadPosRankSum=-1.347;SNPEFF_AMINO_ACID_CHANGE=H154;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_564033_564154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448181    GT:AD:DP:GQ:PL    0/1:14,22:36:99:607,0,453
6    564515    rs2277096    G    T    1311.20    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=6.456;DB;DP=104;Dels=0.0;FS=2.838;HRun=0;HaplotypeScore=2.366;MQ=53.05;MQ0=0;MQRankSum=1.241;QD=12.61;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    0/1:55,48:104:99:1341,0,1224
6    572330    rs2281252    A    G    66.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.231;QD=11.03;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    0/1:3,3:6:69.83:96,0,70
6    572480    rs2073009    G    A    291.09    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.21;DB;DP=31;Dels=0.0;FS=1.525;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.02;QD=9.39;ReadPosRankSum=-0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    0/1:19,12:31:99:321,0,637
6    572714    rs12154040    C    T    1028.81    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DB;DP=101;Dels=0.0;FS=0.82;HRun=0;HaplotypeScore=3.291;MQ=59.54;MQ0=0;MQRankSum=0.305;QD=10.19;ReadPosRankSum=-1.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    0/1:58,42:101:99:1059,0,1465
6    597871    rs4960092    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    599042    rs2294664    T    A    4982.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4982,373,0
6    617519    rs2294666    T    G    205.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230449    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:238,21,0
6    656143    rs1211554    C    A    3686.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=D268Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_655939_656963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUS1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380907    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3686,277,0
6    1101893    rs9391900    C    T    101.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.18;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL033381.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314040    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,223
6    1102488    rs7749569    G    A    84.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.239;QD=7.05;ReadPosRankSum=-0.6;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL033381.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314040    GT:AD:DP:GQ:PL    0/1:8,4:12:99:115,0,300
6    1313117    rs9502889    A    C    85.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.45;SNPEFF_AMINO_ACID_CHANGE=T60P;SNPEFF_CODON_CHANGE=Acg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_1312675_1314992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXQ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296839    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
6    1313121    rs9502890    A    C    88.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.08;SNPEFF_AMINO_ACID_CHANGE=Q61P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_1312675_1314992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXQ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296839    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
6    1390444    rs72667003    G    A    47.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.248;QD=4.76;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=A88T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_1390069_1391353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259806    GT:AD:DP:GQ:PL    0/1:6,4:10:77.63:78,0,122
6    1513887    rs148399012    TCAGTA    T    1204.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=117.8045;IndelType=D;MQ=53.53;MQ0=0;QD=63.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-157J24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404600    GT:AD:DP:GQ:PL    1/1:0,19:19:57.20:1247,57,0
6    1514196    rs12198147    C    T    909.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=39.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-157J24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404600    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:943,69,0
6    1514247    rs12211247    G    A    451.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-157J24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404600    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:485,39,0
6    1742513    rs12200248    A    G    58.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=51.77;MQ0=0;MQRankSum=0.358;QD=9.78;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GMDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380815    GT:AD:DP:GQ:PL    0/1:3,3:6:66.72:89,0,67
6    1742518    rs4959155    C    T    70.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=51.77;MQ0=0;MQRankSum=0.358;QD=11.81;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GMDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380815    GT:AD:DP:GQ:PL    0/1:3,3:6:70.60:101,0,71
6    1742794    rs3734739    A    G    855.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.961;DB;DP=50;Dels=0.0;FS=6.662;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.901;QD=17.1;ReadPosRankSum=-1.079;SNPEFF_AMINO_ACID_CHANGE=D236;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_1742702_1742820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GMDS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530927    GT:AD:DP:GQ:PL    0/1:20,30:50:99:885,0,585
6    1742908    rs3734740    C    G    216.94    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=18.08;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GMDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380815    GT:AD:DP:GQ:PL    0/1:5,7:12:99:247,0,150
6    1960335    rs1323632    C    G    104.81    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=11.65;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GMDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380815    GT:AD:DP:GQ:PL    0/1:5,4:9:99:135,0,173
6    2623820    rs6902511    G    A    367.53    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.655;DB;DP=33;Dels=0.0;FS=3.372;HRun=0;HaplotypeScore=1.5616;MQ=58.73;MQ0=0;MQRankSum=0.655;QD=11.14;ReadPosRankSum=-0.973;SNPEFF_AMINO_ACID_CHANGE=C79;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_2622147_2624353;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf195;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296847    GT:AD:DP:GQ:PL    0/1:18,15:33:99:398,0,497
6    2675271    rs9328114    C    T    596.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=59.48;MQ0=0;MQRankSum=0.036;QD=13.55;ReadPosRankSum=-0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268446    GT:AD:DP:GQ:PL    0/1:22,22:44:99:626,0,716
6    2683439    rs898772    T    A    367.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=24.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268446    GT:AD:DP:GQ:PL    1/1:0,15:15:30.09:400,30,0
6    2683522    rs12530189    G    T    67.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.77;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268446    GT:AD:DP:GQ:PL    0/1:1,3:4:26.55:97,0,27
6    2685677    rs966232    T    C    1784.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=59.16;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268446    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1818,150,0
6    2685904    rs10498657    T    C    141.61    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=12.87;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268446    GT:AD:DP:GQ:PL    0/1:5,6:11:99:172,0,173
6    2689217    rs6930915    A    C    984.82    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.614;DB;DP=68;Dels=0.0;FS=6.22;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.074;QD=14.48;ReadPosRankSum=-1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268446    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1015,0,1099
6    2749381    rs2296356    C    T    1368.73    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.863;DB;DP=106;Dels=0.0;FS=9.547;HRun=0;HaplotypeScore=0.734;MQ=59.78;MQ0=0;MQRankSum=-0.764;QD=12.91;ReadPosRankSum=0.334;SNPEFF_AMINO_ACID_CHANGE=G50R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_2749370_2749640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268446    GT:AD:DP:GQ:PL    0/1:56,49:106:99:1399,0,1753
6    2749661    rs2296355    A    G    257.74    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.742;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=2.839;QD=15.16;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268446    GT:AD:DP:GQ:PL    0/1:8,9:17:99:288,0,264
6    2768905    rs3734500    A    G    135.25    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.573;QD=8.45;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380769    GT:AD:DP:GQ:PL    0/1:10,6:16:99:165,0,330
6    2769205    rs160658    C    T    606.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380764    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:639,48,0
6    2785636    rs1059630    G    T    73.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.31;ReadPosRankSum=0.406;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRNIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380764    GT:AD:DP:GQ:PL    0/1:3,3:6:93.39:104,0,93
6    2833739    rs15286    A    G    246.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468511    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
6    2834265    rs386915    C    T    1071.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460260    GT:AD:DP:GQ:PL    1/1:0,29:30:81.27:1105,81,0
6    2834371    rs3215397    CA    C    134.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=25.4133;IndelType=D;MQ=62.13;MQ0=0;QD=26.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460260    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
6    2834416    rs1262184    G    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460260    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
6    2836266    rs385955    T    A    2477.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460260    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2511,193,0
6    2837846    rs316338    A    G    193.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460260    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:226,18,0
6    2838046    rs316339    A    G    4832.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9916;MQ=59.69;MQ0=0;QD=32.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460260    GT:AD:DP:GQ:PL    1/1:0,151:151:99:4832,391,0
6    2838102    rs316340    G    A    6891.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=214;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460260    GT:AD:DP:GQ:PL    1/1:0,214:214:99:6891,521,0
6    2838248    rs316341    G    A    1331.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=32.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460260    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1364,108,0
6    2890283    rs318486    A    G    512    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380698    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:545,42,0
6    2891016    rs318487    G    C    76.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=15.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380698    GT:AD:DP:GQ:PL    0/1:2,3:5:68.83:107,0,69
6    2948965    rs318426    C    T    2730.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335686    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2764,211,0
6    2949387    rs9378746    G    A    148.71    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.24;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335686    GT:AD:DP:GQ:PL    0/1:2,5:7:61.81:179,0,62
6    2953252    rs2244693    T    C    5236.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8237;MQ=59.56;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335686    GT:AD:DP:GQ:PL    1/1:0,155:156:99:5237,403,0
6    2953445    rs3818276    A    G    6132.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=169;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7304;MQ=59.32;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335686    GT:AD:DP:GQ:PL    1/1:0,169:169:99:6132,463,0
6    2954619    rs1040858    C    T    134.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335686    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
6    2955802    rs2295769    T    C    780.86    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.2592;MQ=59.42;MQ0=0;MQRankSum=0.288;QD=8.87;ReadPosRankSum=-0.288;SNPEFF_AMINO_ACID_CHANGE=M90V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_2955758_2955904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335686    GT:AD:DP:GQ:PL    0/1:56,32:88:99:811,0,1789
6    2959513    rs2236277    C    T    613.21    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=46;Dels=0.0;FS=2.649;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.011;QD=13.33;ReadPosRankSum=0.648;SNPEFF_AMINO_ACID_CHANGE=T18;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_2959402_2959576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335686    GT:AD:DP:GQ:PL    0/1:24,22:46:99:643,0,722
6    2966681    rs7751512    C    T    170.59    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=17;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=10.03;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335686    GT:AD:DP:GQ:PL    0/1:9,8:17:99:201,0,278
6    2990406    rs6920145    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380472    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:74,0,30
6    2990619    rs13191403    G    A    1773.23    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.997;DB;DP=120;Dels=0.0;FS=3.685;HRun=3;HaplotypeScore=0.8941;MQ=59.81;MQ0=0;MQRankSum=1.739;QD=14.78;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380472    GT:AD:DP:GQ:PL    0/1:56,64:120:99:1803,0,1656
6    2990894    rs1054132    G    T    151.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.94;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380472    GT:AD:DP:GQ:PL    0/1:3,5:8:99:181,0,102
6    3010103    rs2756078    G    A    99.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-1.38;QD=16.64;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:2,4:6:63.71:130,0,64
6    3010390    rs1143684    C    T    191.20    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=2.417;DB;DP=27;Dels=0.0;FS=5.579;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=7.08;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=L47F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_3010259_3010423;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:19,8:27:99:221,0,619
6    3010459    rs2475208    C    T    63.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=7.96;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:5,3:8:93.68:94,0,178
6    3012725    rs11351160    TG    T    494.73    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=2.798;DB;DP=33;FS=0.0;HRun=3;HaplotypeScore=81.1268;IndelType=D;MQ=60.65;MQ0=0;MQRankSum=-0.218;QD=14.99;ReadPosRankSum=-0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:16,17:33:99:534,0,512
6    3015790    rs1049115    A    G    269.53    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.626;QD=12.25;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=P110;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_3015764_3015877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:12,10:22:99:300,0,394
6    3019654    rs4149370    T    C    363.03    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.517;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.245;QD=14.52;ReadPosRankSum=1.169;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380472    GT:AD:DP:GQ:PL    0/1:13,12:25:99:393,0,403
6    3023329    .    C    CCCG    1173.37    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=5.058;DP=41;FS=14.434;HRun=0;HaplotypeScore=248.7817;IndelType=I;MQ=59.07;MQ0=0;MQRankSum=0.882;QD=28.62;ReadPosRankSum=-0.789;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:19,18:41:99:1212,0,606
6    3023339    rs62392500    C    T    746.85    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=2.716;DB;DP=42;Dels=0.0;FS=13.487;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.538;QD=17.78;ReadPosRankSum=-2.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:17,25:42:99:777,0,533
6    3023384    rs13193229    T    A    764.85    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.689;DB;DP=55;Dels=0.0;FS=1.064;HRun=0;HaplotypeScore=0.9469;MQ=59.11;MQ0=0;MQRankSum=-0.346;QD=13.91;ReadPosRankSum=0.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:29,26:55:99:795,0,878
6    3023956    rs1040861    C    A    349.12    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.048;DB;DP=34;Dels=0.0;FS=2.646;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=2.481;QD=10.27;ReadPosRankSum=0.744;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338130    GT:AD:DP:GQ:PL    0/1:21,13:34:99:379,0,749
6    3077141    rs2272990    T    C    661.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.55;SNPEFF_AMINO_ACID_CHANGE=F28;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_3076998_3077221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RIPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259808    GT:AD:DP:GQ:PL    1/1:0,24:24:54.16:694,54,0
6    3078266    rs6907943    C    A    238.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RIPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259808    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:271,21,0
6    3104696    rs10498658    C    T    122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RIPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259808    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
6    3118947    rs2231355    A    G    92.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RIPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259808    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:125,12,0
6    3154871    rs17849443    A    C    1901.04    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.37;MQ0=8;QD=22.37;SNPEFF_AMINO_ACID_CHANGE=S188;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_3153903_3155157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333628    GT:AD:DP:GQ:PL    1/1:0,85:85:99:1934,210,0
6    3155988    rs115862064    G    A    295.32    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.8;QD=10.55;ReadPosRankSum=1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380368    GT:AD:DP:GQ:PL    0/1:17,11:28:99:325,0,501
6    3157798    rs909964    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    3157809    rs909965    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    3177404    rs3734485    G    T    581.96    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=3.6;DB;DP=54;Dels=0.0;FS=1.045;HRun=0;HaplotypeScore=0.0;MQ=51.78;MQ0=0;MQRankSum=-0.537;QD=10.78;ReadPosRankSum=-0.907;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP1-40E16.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404155    GT:AD:DP:GQ:PL    0/1:32,22:54:99:612,0,931
6    3255163    rs11242830    C    T    368.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSMG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380306    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
6    3255327    rs9503497    G    A    1892.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4303;MQ=59.2;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=W39*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_6_3255285_3255463;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSMG4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000380306    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1926,141,0
6    3255340    rs9503498    A    C    2323.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.0087;MQ=59.01;MQ0=0;QD=35.2;SNPEFF_AMINO_ACID_CHANGE=T44P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_3255285_3255463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSMG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380306    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2356,178,0
6    3263830    rs12193912    C    T    338.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSMG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380305    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:372,27,0
6    3264101    rs4959785    A    G    409.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSMG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380305    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:442,33,0
6    3264288    rs4959229    A    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436008    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    3267710    rs9328157    T    C    235.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380302    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:269,21,0
6    3285286    rs10793841    A    G    195.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=57.39;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467144    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:229,18,0
6    3287118    rs6910086    T    C    214.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.81;SNPEFF_AMINO_ACID_CHANGE=S226;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_3287093_3287325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380302    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:247,18,0
6    3298568    rs72839355    C    T    302.12    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=23.24;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSMG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451246    GT:AD:DP:GQ:PL    0/1:3,10:13:70.34:332,0,70
6    3723764    rs1045778    G    T    197.54    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=19;Dels=0.0;FS=10.62;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=10.4;ReadPosRankSum=-0.367;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477592    GT:AD:DP:GQ:PL    0/1:10,9:19:99:228,0,354
6    3727811    rs226959    C    G    151.81    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.708;QD=5.23;ReadPosRankSum=-1.244;SNPEFF_AMINO_ACID_CHANGE=Q184H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_3727785_3727896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf145;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380283    GT:AD:DP:GQ:PL    0/1:21,8:29:99:182,0,726
6    3738062    rs2296260    A    C    105.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485986    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:138,12,0
6    3738268    rs145602528    GC    G    540.21    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=4.65;DB;DP=43;FS=3.691;HRun=3;HaplotypeScore=119.3644;IndelType=D;MQ=60.25;MQ0=0;MQRankSum=1.087;QD=12.56;ReadPosRankSum=1.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485986    GT:AD:DP:GQ:PL    0/1:23,20:43:99:579,0,868
6    3739193    rs4959871    T    C    148.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=12.35;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf145;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380283    GT:AD:DP:GQ:PL    0/1:6,6:12:99:178,0,212
6    4020336    rs9392546    C    T    205.12    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.311;QD=11.4;ReadPosRankSum=-0.578;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    0/1:10,8:18:99:235,0,354
6    4020356    rs9405217    G    A    393.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.128;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.953;QD=16.4;ReadPosRankSum=-0.26;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    0/1:12,12:24:99:424,0,341
6    4020540    rs36124455    AT    A    137.61    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.187;DB;DP=34;FS=2.73;HRun=16;HaplotypeScore=184.3639;IndelType=D;MQ=56.83;MQ0=0;MQRankSum=0.634;QD=4.05;ReadPosRankSum=1.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    0/1:13,17:34:93.62:177,0,94
6    4020658    rs1969836    G    A    293.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:327,24,0
6    4020695    rs1969837    A    G    117.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
6    4031998    rs9503893    A    G    1655.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.0;SNPEFF_AMINO_ACID_CHANGE=I69V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4031793_4032989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538861    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1689,129,0
6    4033065    rs6924389    A    G    745.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:778,57,0
6    4037458    rs7744603    A    G    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
6    4037582    rs7763233    C    A    409.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,12:13:33.11:443,33,0
6    4043847    rs707980    A    C    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
6    4043899    rs707981    A    G    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
6    4044297    rs853396    G    T    368.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,12:13:33.10:401,33,0
6    4044344    rs853397    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    4052167    rs3747761    C    A    855.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.57;MQ0=0;MQRankSum=1.609;QD=29.5;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:2,27:29:75.21:888,75,0
6    4052383    rs3747762    G    A    1463.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1496,111,0
6    4052458    rs77013421    G    GT    549.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=5;HaplotypeScore=60.2874;IndelType=I;MQ=59.18;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:592,45,0
6    4057065    rs853405    T    C    213.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:246,21,0
6    4057160    rs853406    T    G    480.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:513,39,0
6    4057200    rs860477    A    G    841.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:875,66,0
6    4057233    rs853407    C    T    1453.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1487,111,0
6    4057429    rs853408    A    G    1633.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1666,126,0
6    4057627    rs860478    G    T    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
6    4058782    rs12198921    C    T    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRPF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337659    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
6    4069133    rs10485172    T    C    1141.01    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.085;DB;DP=74;Dels=0.0;FS=0.903;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.57;QD=15.42;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=M289V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4068930_4069985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf146;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538080    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1171,0,1153
6    4069166    rs595413    C    T    1244.25    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.626;DB;DP=84;Dels=0.0;FS=4.171;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.116;QD=14.81;ReadPosRankSum=2.479;SNPEFF_AMINO_ACID_CHANGE=V278I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4068930_4069985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf146;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538080    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1274,0,1395
6    4069685    rs639905    C    T    348.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.407;DB;DP=45;Dels=0.0;FS=5.164;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.373;QD=7.75;ReadPosRankSum=-1.625;SNPEFF_AMINO_ACID_CHANGE=A105T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4068930_4069985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf146;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538080    GT:AD:DP:GQ:PL    0/1:30,15:45:99:379,0,1106
6    4074604    rs76526703    T    A    214.01    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.343;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=8.23;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274673    GT:AD:DP:GQ:PL    0/1:16,10:26:99:244,0,478
6    4074612    rs9378395    A    C    432.30    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.644;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.852;QD=14.41;ReadPosRankSum=2.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274673    GT:AD:DP:GQ:PL    0/1:14,16:30:99:462,0,473
6    4074634    rs590675    C    A    494.84    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.04;MQ0=0;MQRankSum=-0.581;QD=12.69;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274673    GT:AD:DP:GQ:PL    0/1:22,17:39:99:525,0,651
6    4077535    rs666254    G    C    730.15    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.116;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.67;MQ0=0;MQRankSum=0.619;QD=13.04;ReadPosRankSum=1.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274673    GT:AD:DP:GQ:PL    0/1:30,26:56:99:760,0,845
6    4079875    rs665728    T    C    60.09    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=50.65;MQ0=0;MQRankSum=0.322;QD=7.51;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=F19L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4079440_4079914;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf201;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333388    GT:AD:DP:GQ:PL    0/1:5,3:8:90.08:90,0,121
6    4087934    rs619483    G    C    1882.10    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.282;DB;DP=177;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.2393;MQ=59.89;MQ0=0;MQRankSum=-0.377;QD=10.63;ReadPosRankSum=-2.005;SNPEFF_AMINO_ACID_CHANGE=R20P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4087583_4087960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf201;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380175    GT:AD:DP:GQ:PL    0/1:105,72:177:99:1912,0,3273
6    4115758    rs617790    C    T    1627.55    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.989;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.679;QD=19.61;ReadPosRankSum=-0.446;SNPEFF_AMINO_ACID_CHANGE=A123V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4115675_4115897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf201;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541127    GT:AD:DP:GQ:PL    0/1:29,54:83:99:1658,0,764
6    4116262    rs7166    G    A    440.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.188;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.423;QD=12.97;ReadPosRankSum=0.414;SNPEFF_AMINO_ACID_CHANGE=A177V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4115928_4116263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413766    GT:AD:DP:GQ:PL    0/1:17,17:34:99:471,0,471
6    4119516    rs2326408    A    G    395.79    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.173;QD=14.14;ReadPosRankSum=1.258;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360378    GT:AD:DP:GQ:PL    0/1:11,17:28:99:426,0,326
6    4119553    rs34320283    ATT    A    75.63    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=16;FS=0.0;HRun=17;HaplotypeScore=114.0749;IndelType=D;MQ=59.59;MQ0=0;MQRankSum=0.762;QD=4.73;ReadPosRankSum=0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360378    GT:AD:DP:GQ:PL    0/1:7,7:16:21.03:115,0,21
6    4122249    rs643232    C    A    518.89    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.121;DB;DP=43;Dels=0.0;FS=2.837;HRun=3;HaplotypeScore=2.3656;MQ=59.03;MQ0=0;MQRankSum=0.063;QD=12.07;ReadPosRankSum=-0.617;SNPEFF_AMINO_ACID_CHANGE=P192T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4122183_4122280;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf201;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541127    GT:AD:DP:GQ:PL    0/1:23,20:43:99:549,0,617
6    4125655    rs659305    A    G    679.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.608;DB;DP=44;Dels=0.0;FS=3.112;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.425;QD=15.43;ReadPosRankSum=0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430835    GT:AD:DP:GQ:PL    0/1:22,22:44:99:709,0,702
6    4133855    rs3177253    C    T    1297.33    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.865;MQ=59.53;MQ0=0;MQRankSum=1.571;QD=14.58;ReadPosRankSum=0.611;SNPEFF_AMINO_ACID_CHANGE=M17I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4133783_4133935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361538    GT:AD:DP:GQ:PL    0/1:44,45:89:99:1327,0,1404
6    4610766    rs2294871    G    T    163.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP4-529N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380106    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
6    4611094    rs926587    T    A    373.16    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.057;QD=21.95;ReadPosRankSum=-1.302;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP4-529N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380106    GT:AD:DP:GQ:PL    0/1:4,13:17:99:403,0,123
6    4892081    rs61749071    C    T    937.80    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.782;MQ=60.0;MQ0=0;MQRankSum=-1.336;QD=14.43;ReadPosRankSum=-0.074;SNPEFF_AMINO_ACID_CHANGE=H107;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_4891947_4892613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDYL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328908    GT:AD:DP:GQ:PL    0/1:33,32:65:99:968,0,990
6    4936074    rs1539004    T    G    1142.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;QD=38.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474977    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1176,87,0
6    4937662    rs9502253    A    C    251.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474977    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
6    4944004    rs34649909    TA    T    67.50    QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.375;DB;DP=34;FS=0.0;HRun=17;HaplotypeScore=308.7732;IndelType=D;MQ=47.98;MQ0=0;MQRankSum=-0.606;QD=1.99;ReadPosRankSum=-0.664;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440139    GT:AD:DP:GQ:PL    0/1:10,10:34:99:107,0,119
6    4952413    rs2793263    T    C    121.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328908    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
6    4999193    rs396839    A    G    128.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483546    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    5000350    rs2764107    T    C    56.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483546    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
6    5000721    rs2764108    T    C    151.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=25.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483546    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:184,15,0
6    5000724    rs10631918    C    CT    118.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=18;HaplotypeScore=125.9513;IndelType=I;MQ=41.01;MQ0=0;QD=13.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483546    GT:AD:DP:GQ:PL    1/1:2,7:9:23.65:161,24,0
6    5002050    rs2764109    C    T    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319533    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
6    5002145    rs1617590    A    G    506.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;QD=28.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319533    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:539,45,0
6    5002615    rs5873963    A    AC    183.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=9.0829;IndelType=I;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319533    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
6    5086070    rs667752    A    G    110.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.66;SNPEFF_AMINO_ACID_CHANGE=A117;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_5085720_5087455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R3G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405617    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
6    5086558    rs436556    C    A    123.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=20.51;SNPEFF_AMINO_ACID_CHANGE=P280Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_5085720_5087455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R3G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405617    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:156,12,0
6    5104160    rs620360    A    G    112.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330636    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:145,12,0
6    5109592    rs9606    T    G    1267.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458438    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1300,99,0
6    5217010    rs41302851    C    T    762.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.824;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4764;MQ=58.05;MQ0=0;MQRankSum=-0.179;QD=18.59;ReadPosRankSum=0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330636    GT:AD:DP:GQ:PL    0/1:16,24:41:99:792,0,405
6    5217082    rs17139809    C    T    33.74    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.05;MQ0=0;MQRankSum=-0.572;QD=4.22;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330636    GT:AD:DP:GQ:PL    0/1:6,2:8:63.73:64,0,115
6    5404958    rs7759327    C    T    733.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.962;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;MQRankSum=-0.767;QD=16.67;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274680    GT:AD:DP:GQ:PL    0/1:18,24:44:99:764,0,362
6    5431571    rs2432760    G    A    299.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274680    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
6    5431960    rs10900967    A    G    518.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.827;DB;DP=34;Dels=0.0;FS=1.431;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=15.26;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397563    GT:AD:DP:GQ:PL    0/1:17,17:34:99:549,0,568
6    5545654    rs7749599    C    T    1104.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274680    GT:AD:DP:GQ:PL    1/1:0,29:29:87.24:1138,87,0
6    5831924    rs34559311    CT    C    923.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=57.6987;IndelType=D;MQ=60.0;MQ0=0;QD=40.16;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:966,69,0
6    5832125    rs13209052    C    T    504.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:537,39,0
6    5999464    rs3749860    C    G    246.68    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.326;DB;DP=24;Dels=0.0;FS=11.083;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.403;QD=10.28;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244766    GT:AD:DP:GQ:PL    0/1:13,11:24:99:277,0,430
6    6006814    rs35560260    C    G    137.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=13.78;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244766    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,178
6    6145692    rs1050783    C    T    54.08    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.41;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441301    GT:AD:DP:GQ:PL    0/1:7,3:10:84.07:84,0,257
6    6145726    rs1050782    A    G    338.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441301    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:372,30,0
6    6145882    rs5989    G    A    771.92    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.301;DB;DP=64;Dels=0.0;FS=6.991;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-0.571;QD=12.06;ReadPosRankSum=-0.764;SNPEFF_AMINO_ACID_CHANGE=D617;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_6145759_6145970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441301    GT:AD:DP:GQ:PL    0/1:33,30:64:99:802,0,975
6    6152007    rs5980    C    T    603.01    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=41;Dels=0.0;FS=3.017;HRun=0;HaplotypeScore=0.8941;MQ=58.87;MQ0=0;MQRankSum=0.144;QD=14.71;ReadPosRankSum=-0.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264870    GT:AD:DP:GQ:PL    0/1:19,22:41:99:633,0,636
6    6152137    rs5988    C    G    1495.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.61;SNPEFF_AMINO_ACID_CHANGE=E652Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_6152046_6152182;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264870    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1528,108,0
6    6152140    rs5987    C    T    531.52    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.704;DB;DP=41;Dels=0.0;FS=1.411;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.706;QD=12.96;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=E588K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_6152140_6152182;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441301    GT:AD:DP:GQ:PL    0/1:21,19:41:99:562,0,682
6    6152211    rs2274394    C    G    123.87    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.041;QD=7.74;ReadPosRankSum=0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264870    GT:AD:DP:GQ:PL    0/1:10,6:16:99:154,0,371
6    6167621    rs435048    G    A    663.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264870    GT:AD:DP:GQ:PL    1/1:0,18:19:51.17:696,51,0
6    6174642    rs3837028    A    AAAG    339.06    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=27.8872;IndelType=I;MQ=53.87;MQ0=0;MQRankSum=-0.296;QD=33.91;ReadPosRankSum=-1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264870    GT:AD:DP:GQ:PL    0/1:3,6:10:99:378,0,107
6    6174786    rs380058    G    C    2749.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264870    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2782,208,0
6    6222482    rs79385952    G    A    197.52    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.405;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=58.75;MQ0=0;MQRankSum=-0.289;QD=13.17;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264870    GT:AD:DP:GQ:PL    0/1:8,7:15:99:228,0,284
6    6250967    rs3024370    G    A    271.82    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=15.99;ReadPosRankSum=-0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479211    GT:AD:DP:GQ:PL    0/1:8,9:17:99:302,0,280
6    6318921    rs11414870    G    GA    394.65    PASS    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=1.629;DB;DP=69;FS=0.0;HRun=14;HaplotypeScore=339.3886;IndelType=I;MQ=55.93;MQ0=0;MQRankSum=-1.997;QD=5.72;ReadPosRankSum=-2.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264870    GT:AD:DP:GQ:PL    0/1:55,12:69:99:434,0,196
6    6321128    rs1024231    T    C    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_6_6321033_6321138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F13A1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000431222    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    6588881    rs977785    A    C    413.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379953    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:446,36,0
6    6589192    rs112924538    G    GGA    830.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=39.5655;IndelType=I;MQ=58.94;MQ0=0;QD=51.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230568    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:873,48,0
6    6589277    rs3765285    C    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230568    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    6649974    rs5874047    A    AAGG    842.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=48.5425;IndelType=I;MQ=56.48;MQ0=0;QD=49.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230568    GT:AD:DP:GQ:PL    1/1:3,14:17:42.14:885,42,0
6    7211751    rs1334577    G    A    1055.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471433    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1089,81,0
6    7211818    rs1334576    G    A    1151.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=G195R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7211806_7211942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334984    GT:AD:DP:GQ:PL    1/1:0,34:34:87.29:1184,87,0
6    7212084    rs4960297    C    T    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471433    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
6    7226755    rs138181401    G    A    771.46    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=4.216;DB;DP=47;Dels=0.0;FS=9.154;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=16.41;ReadPosRankSum=0.011;SNPEFF_AMINO_ACID_CHANGE=A255T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7226700_7226889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334984    GT:AD:DP:GQ:PL    0/1:19,28:47:99:801,0,461
6    7230680    rs9502564    G    T    132.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_AMINO_ACID_CHANGE=G783V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7229230_7232140;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334984    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
6    7232186    rs9505086    T    C    194.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=12.13;ReadPosRankSum=1.523;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483150    GT:AD:DP:GQ:PL    0/1:8,8:16:99:224,0,220
6    7240577    rs2714337    A    T    391.20    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=58.13;MQ0=0;MQRankSum=-0.556;QD=15.65;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334984    GT:AD:DP:GQ:PL    0/1:11,14:25:99:421,0,317
6    7247248    rs2256596    T    C    526.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=L1467P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7246657_7247454;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RREB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349384    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:560,42,0
6    7290360    rs1408749    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479485    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:70,0,29
6    7295755    rs2714361    G    A    212.94    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.27;QD=13.31;ReadPosRankSum=0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462112    GT:AD:DP:GQ:PL    0/1:9,7:16:99:243,0,321
6    7298287    rs2714309    G    A    99.32    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.2;MQ0=0;MQRankSum=-0.935;QD=7.64;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483409    GT:AD:DP:GQ:PL    0/1:7,6:13:99:129,0,243
6    7298384    rs2714310    T    C    42.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.25;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483409    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
6    7309972    rs1819250    A    C    52.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.59;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244763    GT:AD:DP:GQ:PL    0/1:5,3:8:82.70:83,0,184
6    7330166    rs146015146    G    T    133.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.259;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.839;QD=9.55;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAGE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296742    GT:AD:DP:GQ:PL    0/1:8,6:14:99:164,0,216
6    7330194    rs11381590    T    TG    246.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=22.5876;IndelType=I;MQ=60.0;MQ0=0;QD=41.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAGE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296742    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:288,18,0
6    7390369    rs2296358    T    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379834    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
6    7393452    rs2274212    C    T    2146.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.66;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=D64;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7393332_7393536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379834    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2180,163,0
6    7396836    rs12212766    G    A    692.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379834    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:725,54,0
6    7396887    rs12212772    G    A    1730.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379834    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1763,132,0
6    7398832    rs2296359    A    G    310.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379834    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:343,27,0
6    7414382    rs2245533    T    C    443.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493691    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:476,36,0
6    7414657    rs4960314    T    C    1274.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=59.48;MQ0=0;QD=28.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493691    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1308,108,0
6    7542148    rs17133512    C    CA    309.61    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=28.7441;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=-0.133;QD=22.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_7541808_7542318;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:5,9:14:99:349,0,153
6    7563232    rs2076295    T    G    152.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
6    7563983    rs2806234    T    G    1155.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=A247;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7563969_7564019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1189,93,0
6    7564139    rs1358903    C    G    193.13    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=24.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:2,6:8:59.80:223,0,60
6    7565885    rs3778337    G    A    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    7566415    rs2757633    T    C    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506617    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
6    7567970    rs2076296    C    T    1183.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506617    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1217,90,0
6    7568079    rs150422458    G    A    362.11    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.665;DB;DP=36;Dels=0.0;FS=3.017;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.276;QD=10.06;ReadPosRankSum=0.243;SNPEFF_AMINO_ACID_CHANGE=K207;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7568014_7568139;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397483    GT:AD:DP:GQ:PL    0/1:22,14:36:99:392,0,696
6    7568354    rs2076297    G    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506617    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    7569326    rs11755954    C    T    220.72    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.035;QD=10.51;ReadPosRankSum=-0.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506617    GT:AD:DP:GQ:PL    0/1:11,10:21:99:251,0,382
6    7570963    rs2076302    A    G    244.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506617    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
6    7571874    rs926411    G    A    1417.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1451,120,0
6    7572026    rs2076303    T    A    1031.15    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.832;DB;DP=73;Dels=0.0;FS=1.337;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=14.13;ReadPosRankSum=-1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1061,0,1139
6    7572262    rs2076304    A    G    1190.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.08;SNPEFF_AMINO_ACID_CHANGE=G502;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7572075_7572301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397483    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1224,93,0
6    7574805    rs2259208    C    T    211.25    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.918;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.377;QD=7.54;ReadPosRankSum=-0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:19,9:28:99:241,0,708
6    7576527    rs1016835    G    A    1398.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=R682;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7576527_7576689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397483    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1432,105,0
6    7577260    rs2064217    C    T    532.49    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=4.195;DB;DP=38;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=1.9153;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=14.01;ReadPosRankSum=1.126;SNPEFF_AMINO_ACID_CHANGE=C759;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7577192_7577275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397483    GT:AD:DP:GQ:PL    0/1:18,20:38:99:562,0,481
6    7577354    rs2064218    C    A    158.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=17.66;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:3,6:9:67.19:189,0,67
6    7578189    rs6942260    G    A    41.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.065;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=0.653;QD=2.33;ReadPosRankSum=-0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:12,6:18:71.90:72,0,402
6    7578819    rs2806229    T    G    1256.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    1/1:0,34:34:93.31:1290,93,0
6    7578823    rs2842691    G    A    1212.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    1/1:0,32:32:90.30:1245,90,0
6    7578970    rs2744378    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:73,0,28
6    7579412    rs2806225    A    G    161.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.11;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:4,6:10:99:191,0,132
6    7581032    rs28763967    C    T    2607.03    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=3.685;DB;DP=156;Dels=0.0;FS=3.883;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.458;QD=16.71;ReadPosRankSum=0.965;SNPEFF_AMINO_ACID_CHANGE=R1537C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7579508_7581802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379802    GT:AD:DP:GQ:PL    0/1:70,86:156:99:2637,0,1937
6    7583885    rs28763969    T    C    868.47    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.167;DB;DP=69;Dels=0.0;FS=8.959;HRun=1;HaplotypeScore=0.734;MQ=59.73;MQ0=0;MQRankSum=0.259;QD=12.59;ReadPosRankSum=-0.234;SNPEFF_AMINO_ACID_CHANGE=A1531;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7582875_7586805;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418664    GT:AD:DP:GQ:PL    0/1:37,32:69:99:898,0,1263
6    7585967    rs2744380    G    C    2171.33    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.341;DB;DP=149;Dels=0.0;FS=0.639;HRun=0;HaplotypeScore=4.0318;MQ=59.28;MQ0=0;MQRankSum=-1.962;QD=14.57;ReadPosRankSum=-0.219;SNPEFF_AMINO_ACID_CHANGE=G2225;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7582875_7586805;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418664    GT:AD:DP:GQ:PL    0/1:72,76:149:99:2201,0,2157
6    7599665    rs6900864    A    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342415    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
6    7601776    rs7739209    G    A    744.88    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.472;QD=15.2;ReadPosRankSum=-0.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397475    GT:AD:DP:GQ:PL    0/1:26,23:49:99:775,0,848
6    7602857    rs9502622    C    T    486.03    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.671;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.061;QD=8.84;ReadPosRankSum=-1.583;SNPEFF_AMINO_ACID_CHANGE=D199;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_7602856_7602977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP48;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342415    GT:AD:DP:GQ:PL    0/1:35,20:55:99:516,0,1166
6    7605560    rs7747290    T    C    215.74    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=21;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.458;QD=10.27;ReadPosRankSum=0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342415    GT:AD:DP:GQ:PL    0/1:11,10:21:99:246,0,318
6    7606255    rs2757597    G    A    1015.12    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.227;DB;DP=66;Dels=0.0;FS=3.585;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.942;QD=15.38;ReadPosRankSum=0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342415    GT:AD:DP:GQ:PL    0/1:30,36:66:99:1045,0,839
6    7609117    rs1535434    T    C    336.15    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.547;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=57.05;MQ0=0;MQRankSum=-0.908;QD=14.01;ReadPosRankSum=0.146;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496946    GT:AD:DP:GQ:PL    0/1:10,14:24:99:366,0,347
6    8016089    rs2057185    C    T    726.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=38.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUTED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397457    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:759,57,0
6    8016157    rs13202814    T    G    146.69    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.96;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUTED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397457    GT:AD:DP:GQ:PL    0/1:2,5:7:60.70:177,0,61
6    8026577    rs9328452    T    C    570.35    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=32;Dels=0.0;FS=1.96;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=17.82;ReadPosRankSum=-0.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUTED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397457    GT:AD:DP:GQ:PL    0/1:11,21:32:99:600,0,342
6    8040972    rs2815139    T    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUTED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397457    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    8064677    rs35991100    G    A    76.83    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EEF1E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397456    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:107,0,30
6    8090215    rs1136045    A    T    37.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EEF1E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515633    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
6    8102885    rs112839011    G    A    176.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.56;ReadPosRankSum=-1.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EEF1E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379715    GT:AD:DP:GQ:PL    0/1:6,7:13:99:206,0,197
6    8103003    rs3757095    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EEF1E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379715    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    9707825    rs4715924    A    G    93.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OFCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460363    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
6    9809724    rs13204197    T    C    341    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=-0.361;QD=10.66;ReadPosRankSum=0.019;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OFCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469426    GT:AD:DP:GQ:PL    0/1:18,14:32:99:371,0,616
6    9900599    rs112038050    T    TGAG    1538.54    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.596;DB;DP=56;FS=1.087;HRun=0;HaplotypeScore=177.1482;IndelType=I;MQ=56.01;MQ0=0;MQRankSum=0.187;QD=27.47;ReadPosRankSum=-2.268;SNPEFF_AMINO_ACID_CHANGE=-224L;SNPEFF_CODON_CHANGE=-/CTC;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_6_9900559_9900722;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OFCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316020    GT:AD:DP:GQ:PL    0/1:31,25:56:99:1578,0,1189
6    10415006    rs654351    G    C    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFAP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486038    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:167,12,0
6    10430171    rs303061    T    C    1074.87    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=1.15;DB;DP=97;Dels=0.0;FS=3.958;HRun=0;HaplotypeScore=0.9469;MQ=59.33;MQ0=0;MQRankSum=1.068;QD=11.08;ReadPosRankSum=0.438;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP1-290I10.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472178    GT:AD:DP:GQ:PL    0/1:59,38:97:99:1105,0,1726
6    10529119    rs79945859    A    C    558.57    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.92;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9334;MQ=59.18;MQ0=0;MQRankSum=0.273;QD=10.95;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488742    GT:AD:DP:GQ:PL    0/1:32,19:51:99:589,0,1009
6    10587038    rs539351    C    G    2690.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=34.95;SNPEFF_AMINO_ACID_CHANGE=D272E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_10585979_10587147;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265012    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2724,202,0
6    10634960    rs71548859    AT    A    53.98    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=15;FS=0.0;HRun=16;HaplotypeScore=97.2294;IndelType=D;MQ=59.09;MQ0=0;MQRankSum=1.663;QD=3.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379591    GT:AD:DP:GQ:PL    0/1:8,7:15:59.66:93,0,60
6    10724943    rs4711068    T    C    127.80    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=1.9559;MQ=60.0;MQ0=0;MQRankSum=1.532;QD=11.62;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM14C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229563    GT:AD:DP:GQ:PL    0/1:5,6:11:99:158,0,179
6    10725469    rs2275493    T    G    219.41    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=24.38;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM14C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229563    GT:AD:DP:GQ:PL    0/1:2,7:9:55.79:249,0,56
6    10729020    rs2153073    C    T    216.28    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=12.72;ReadPosRankSum=1.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM14C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495549    GT:AD:DP:GQ:PL    0/1:9,8:17:99:246,0,314
6    10764727    rs126405    A    G    748.23    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=52;Dels=0.0;FS=4.824;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-2.179;QD=14.39;ReadPosRankSum=0.769;SNPEFF_AMINO_ACID_CHANGE=H610;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_10762956_10764839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313243    GT:AD:DP:GQ:PL    0/1:25,27:52:99:778,0,795
6    10775446    rs478791    T    C    1087.31    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=2.398;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.298;QD=17.82;ReadPosRankSum=-0.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313243    GT:AD:DP:GQ:PL    0/1:25,36:61:99:1117,0,857
6    10784828    .    C    T    415.31    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.284;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.478;QD=10.65;ReadPosRankSum=-0.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313243    GT:AD:DP:GQ:PL    0/1:23,15:38:99:445,0,684
6    10791746    rs517970    T    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536370    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    10792197    rs521802    T    C    177.04    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=17.7;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313243    GT:AD:DP:GQ:PL    0/1:3,7:10:94.68:207,0,95
6    10802045    rs569418    C    G    139.71    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.381;QD=10.75;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313243    GT:AD:DP:GQ:PL    0/1:8,5:13:99:170,0,258
6    10802101    rs4712966    G    A    372.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.487;DB;DP=35;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=10.63;ReadPosRankSum=-0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313243    GT:AD:DP:GQ:PL    0/1:20,15:35:99:402,0,706
6    10814091    rs6909367    A    G    233.20    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=11.1;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313243    GT:AD:DP:GQ:PL    0/1:13,8:21:99:263,0,422
6    10819094    rs2272883    G    A    295.70    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.755;QD=16.43;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313243    GT:AD:DP:GQ:PL    0/1:8,10:18:99:326,0,250
6    10875238    rs2076257    T    A    34.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.92;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379491    GT:AD:DP:GQ:PL    0/1:4,3:7:64.40:64,0,142
6    10876036    rs2076258    C    T    455.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=27;Dels=0.0;FS=3.078;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.194;QD=16.88;ReadPosRankSum=-0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379491    GT:AD:DP:GQ:PL    0/1:12,15:27:99:486,0,385
6    10877210    rs9393726    C    T    155.15    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.811;QD=11.93;ReadPosRankSum=1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379491    GT:AD:DP:GQ:PL    0/1:7,6:13:99:185,0,249
6    10882070    rs16870746    A    G    85.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=10.63;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543878    GT:AD:DP:GQ:PL    0/1:4,4:8:99:115,0,144
6    10882100    rs2153156    G    A    222.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543878    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:255,21,0
6    10887251    rs9366663    T    C    489.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543878    GT:AD:DP:GQ:PL    1/1:0,15:15:45.10:522,45,0
6    10887253    rs9358956    G    C    512.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543878    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:546,45,0
6    10887276    rs9348724    C    G    580.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543878    GT:AD:DP:GQ:PL    1/1:0,21:21:48.14:614,48,0
6    10891651    rs71550740    ATTTT    A    178.12    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=23;FS=0.0;HRun=20;HaplotypeScore=162.8461;IndelType=D;MQ=45.79;MQ0=0;MQRankSum=0.91;QD=7.74;ReadPosRankSum=-1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    0/1:13,7:23:71.02:217,0,71
6    10891781    rs1538441    C    T    2211.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=54.21;MQ0=0;QD=29.1;SNPEFF_AMINO_ACID_CHANGE=D15;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_10891746_10891814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2245,172,0
6    10891844    .    CTCTGTG    C    1133.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.04;DP=39;FS=0.0;HRun=0;HaplotypeScore=470.4424;IndelType=D;MQ=55.83;MQ0=0;MQRankSum=0.842;QD=29.07;ReadPosRankSum=1.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    1/1:5,32:39:74.15:1176,74,0
6    10894055    rs6936232    A    C    299.89    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6598;MQ=58.99;MQ0=0;MQRankSum=-0.4;QD=13.04;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    0/1:11,12:23:99:330,0,402
6    10894255    rs9368453    G    A    445.54    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.634;DB;DP=35;Dels=0.0;FS=3.11;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.974;QD=12.73;ReadPosRankSum=-1.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    0/1:18,17:35:99:476,0,574
6    10894267    rs6456744    C    T    385.63    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=34;Dels=0.0;FS=5.757;HRun=0;HaplotypeScore=2.5049;MQ=59.32;MQ0=0;MQRankSum=-2.058;QD=11.34;ReadPosRankSum=-0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    0/1:15,19:34:99:416,0,402
6    10894268    rs6456745    A    G    892.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5049;MQ=59.3;MQ0=0;QD=27.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    1/1:0,31:33:84.15:925,84,0
6    10894381    rs6456746    G    A    881.51    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=67;Dels=0.0;FS=2.021;HRun=0;HaplotypeScore=0.9332;MQ=59.66;MQ0=0;MQRankSum=0.122;QD=13.16;ReadPosRankSum=0.303;SNPEFF_AMINO_ACID_CHANGE=V94I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_10894318_10894437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    0/1:37,30:67:99:911,0,1144
6    10898981    rs9357018    A    G    671.39    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.67;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6545;MQ=60.0;MQ0=0;MQRankSum=0.21;QD=13.43;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    0/1:24,26:50:99:701,0,846
6    10924992    rs1225764    A    G    128.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487561    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    10927692    rs1630997    A    G    122.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487561    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:155,12,0
6    10930942    rs1225728    G    A    40.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543878    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
6    10931587    rs1225729    T    C    1145.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543878    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1178,84,0
6    10942994    rs34079965    CT    C    149.11    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=0.807;DB;DP=29;FS=0.0;HRun=16;HaplotypeScore=171.192;IndelType=D;MQ=59.2;MQ0=0;MQRankSum=-0.269;QD=5.14;ReadPosRankSum=1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    0/1:13,16:29:8.24:188,0,8
6    10955212    rs1225745    G    A    406.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:440,33,0
6    10955408    rs1225746    C    T    3751.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5362;MQ=59.85;MQ0=0;QD=31.0;SNPEFF_AMINO_ACID_CHANGE=P672S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_10955349_10955450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    1/1:0,120:121:99:3751,286,0
6    10955594    rs1225747    T    C    261.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:295,24,0
6    10956236    rs1225752    A    G    106.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283141    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
6    10989942    rs12195587    G    A    1202.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.34;MQ0=0;QD=34.36;SNPEFF_AMINO_ACID_CHANGE=Y253;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_10989936_10990070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354666    GT:AD:DP:GQ:PL    1/1:0,35:35:93.28:1236,93,0
6    11105361    rs55899211    C    T    1329.38    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.294;DB;DP=89;Dels=0.0;FS=0.808;HRun=0;HaplotypeScore=1.9158;MQ=60.0;MQ0=0;MQRankSum=0.414;QD=14.94;ReadPosRankSum=-0.989;SNPEFF_AMINO_ACID_CHANGE=S61;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_11102722_11105863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERVFRD-1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000472091    GT:AD:DP:GQ:PL    0/1:44,45:89:99:1359,0,1389
6    11185257    rs10601    A    T    161.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379446    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
6    11185533    rs1050775    G    A    1630.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_AMINO_ACID_CHANGE=T789;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_11183531_11185904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379446    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1664,123,0
6    11185967    rs6456968    T    C    452.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379446    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:486,36,0
6    11190075    rs17495484    T    C    245.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.43;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=12.25;ReadPosRankSum=0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505589    GT:AD:DP:GQ:PL    0/1:12,8:20:99:275,0,427
6    11190626    rs941982    A    G    741.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=V492;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_11190197_11191438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379446    GT:AD:DP:GQ:PL    1/1:1,22:23:60.18:775,60,0
6    11192522    rs5874310    C    CT    549.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=63.6915;IndelType=I;MQ=62.45;MQ0=0;QD=42.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379446    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:591,39,0
6    11192575    rs1465131    C    T    914.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.19;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379446    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:948,69,0
6    11201437    rs9368610    C    T    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379433    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    11232567    rs72827151    C    T    40.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.05;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379433    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:70,0,72
6    11233468    rs114587388    T    C    1754.13    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DB;DP=122;Dels=0.0;FS=4.045;HRun=1;HaplotypeScore=1.4725;MQ=59.43;MQ0=0;MQRankSum=-0.533;QD=14.38;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397378    GT:AD:DP:GQ:PL    0/1:62,60:122:99:1784,0,1784
6    11233801    rs72827152    C    T    658.57    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.328;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.49;MQ0=0;MQRankSum=-0.829;QD=14.63;ReadPosRankSum=1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397378    GT:AD:DP:GQ:PL    0/1:22,23:45:99:689,0,656
6    11714806    rs3734273    G    A    555.29    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.604;DB;DP=41;Dels=0.0;FS=1.571;HRun=0;HaplotypeScore=0.5784;MQ=58.98;MQ0=0;MQRankSum=-0.9;QD=13.54;ReadPosRankSum=-1.865;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C6orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379413    GT:AD:DP:GQ:PL    0/1:21,20:41:99:585,0,662
6    11723409    rs926364    G    A    324.44    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=24.96;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C6orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229583    GT:AD:DP:GQ:PL    0/1:3,10:13:60.92:354,0,61
6    11723538    rs210905    A    G    1653.73    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.359;DB;DP=108;Dels=0.0;FS=4.213;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.14;QD=15.31;ReadPosRankSum=0.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C6orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229583    GT:AD:DP:GQ:PL    0/1:51,57:108:99:1684,0,1467
6    12016009    rs6916066    G    C    926.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379388    GT:AD:DP:GQ:PL    1/1:0,29:29:81.21:959,81,0
6    12122645    rs6900196    A    G    2969.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=T873A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_12120123_12126103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379388    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3003,235,0
6    12123249    rs2228220    A    G    1320.72    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.69;DB;DP=89;Dels=0.0;FS=5.761;HRun=0;HaplotypeScore=0.734;MQ=59.74;MQ0=0;MQRankSum=0.878;QD=14.84;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=N1074S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_12120123_12126103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379388    GT:AD:DP:GQ:PL    0/1:47,41:89:99:1351,0,1600
6    12124587    rs2228212    C    G    1114.23    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=61;Dels=0.0;FS=5.303;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.232;QD=18.27;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=A1520G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_12120123_12126103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379388    GT:AD:DP:GQ:PL    0/1:26,35:61:99:1144,0,687
6    12125772    rs1126472    A    G    819.71    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.322;DB;DP=60;Dels=0.0;FS=2.188;HRun=1;HaplotypeScore=0.9916;MQ=58.91;MQ0=0;MQRankSum=1.07;QD=13.66;ReadPosRankSum=1.382;SNPEFF_AMINO_ACID_CHANGE=Q1915R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_12120123_12126103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379388    GT:AD:DP:GQ:PL    0/1:27,33:60:99:850,0,850
6    12129936    rs3734271    T    G    125.30    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.69;QD=6.96;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379388    GT:AD:DP:GQ:PL    0/1:13,5:18:99:155,0,444
6    12165363    rs219950    C    T    327    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.305;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=-1.14;QD=11.28;ReadPosRankSum=0.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379388    GT:AD:DP:GQ:PL    0/1:15,14:29:99:357,0,372
6    12290906    rs73722760    G    T    68.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=32;Dels=0.0;FS=38.894;HRun=2;HaplotypeScore=3.8505;MQ=52.32;MQ0=0;MQRankSum=-1.518;QD=2.13;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=C15F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_12290596_12290926;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379375    GT:AD:DP:GQ:PL    0/1:16,16:32:98.01:98,0,518
6    12294137    rs1800543    T    C    75.72    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=21;Dels=0.0;FS=2.605;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.124;QD=3.61;ReadPosRankSum=-1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379375    GT:AD:DP:GQ:PL    0/1:16,5:21:99:106,0,519
6    12294258    rs5369    A    G    667.01    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.601;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.63;MQ0=0;MQRankSum=-0.545;QD=10.59;ReadPosRankSum=-2.044;SNPEFF_AMINO_ACID_CHANGE=E106;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_12294174_12294329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379375    GT:AD:DP:GQ:PL    0/1:35,28:63:99:697,0,964
6    12296255    rs5370    G    T    1860.75    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.097;DB;DP=152;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=1.5253;MQ=59.54;MQ0=0;MQRankSum=-0.563;QD=12.24;ReadPosRankSum=-0.298;SNPEFF_AMINO_ACID_CHANGE=K198N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_12296195_12297427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379375    GT:AD:DP:GQ:PL    0/1:79,73:152:99:1891,0,2428
6    13182685    rs3778646    G    T    444.98    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.437;DB;DP=54;Dels=0.0;FS=6.953;HRun=0;HaplotypeScore=0.9967;MQ=59.65;MQ0=0;MQRankSum=-0.569;QD=8.24;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    0/1:33,21:54:99:475,0,986
6    13182995    rs3823445    G    A    521.76    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=41;Dels=0.0;FS=3.053;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.539;QD=12.73;ReadPosRankSum=-1.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482982    GT:AD:DP:GQ:PL    0/1:23,18:41:99:552,0,769
6    13228004    rs7765972    G    A    1586.25    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=5.354;DB;DP=91;Dels=0.0;FS=2.156;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.967;QD=17.43;ReadPosRankSum=0.848;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    0/1:42,49:91:99:1616,0,1171
6    13273318    rs202054    A    G    272.57    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=11.85;ReadPosRankSum=-0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421203    GT:AD:DP:GQ:PL    0/1:12,11:23:99:303,0,431
6    13278648    rs3817735    A    G    158.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.968;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=11.29;ReadPosRankSum=0.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379350    GT:AD:DP:GQ:PL    0/1:8,6:14:99:188,0,256
6    13278753    rs9395602    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379350    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    13278788    rs9381884    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379350    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    13281628    rs398151    A    C    158.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
6    13283459    rs546017    C    G    71.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.28;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,141
6    13283924    rs416831    A    G    145.40    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=13.22;ReadPosRankSum=-1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481706    GT:AD:DP:GQ:PL    0/1:5,6:11:99:175,0,171
6    13283930    rs434923    C    T    107.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.4;ReadPosRankSum=-2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481706    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,140
6    13286202    rs368590    G    T    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=5.3;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379329    GT:AD:DP:GQ:PL    0/1:4,4:8:72.42:72,0,138
6    13286517    rs617580    A    G    1274.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379329    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1307,99,0
6    13288425    rs202041    C    A    258.45    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=51.5;MQ0=0;MQRankSum=0.566;QD=18.46;ReadPosRankSum=-0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379329    GT:AD:DP:GQ:PL    0/1:5,9:14:91.78:288,0,92
6    13288535    rs202040    C    T    2617.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=56.02;MQ0=0;QD=35.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379329    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2651,208,0
6    13288578    rs202039    G    A    1804.01    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=5.048;DB;DP=111;Dels=0.0;FS=1.738;HRun=1;HaplotypeScore=2.1593;MQ=57.5;MQ0=0;MQRankSum=-0.449;QD=16.25;ReadPosRankSum=-0.341;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379329    GT:AD:DP:GQ:PL    0/1:48,63:111:99:1834,0,1172
6    13288648    rs202038    A    G    3972.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.25;MQ0=0;QD=32.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    1/1:0,124:124:99:3973,313,0
6    13288669    rs202037    C    T    1982.97    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.832;DB;DP=110;Dels=0.0;FS=0.786;HRun=1;HaplotypeScore=1.6809;MQ=57.19;MQ0=0;MQRankSum=-0.374;QD=18.03;ReadPosRankSum=-2.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    0/1:38,72:110:99:2013,0,1109
6    13288679    rs67298859    GCT    G    2056.51    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=7.462;DB;DP=101;FS=6.32;HRun=0;HaplotypeScore=911.412;IndelType=D;MQ=57.99;MQ0=0;MQRankSum=0.056;QD=20.36;ReadPosRankSum=-1.873;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    0/1:43,58:101:99:2096,0,1351
6    13288737    rs202036    T    A    1044.35    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.991;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.75;MQ0=0;MQRankSum=0.106;QD=18.99;ReadPosRankSum=-1.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    0/1:19,36:55:99:1074,0,561
6    13288850    rs3734878    C    T    65.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.39;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332995    GT:AD:DP:GQ:PL    0/1:1,3:4:26.55:96,0,27
6    13294976    rs20500    G    A    966.32    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=4.129;DB;DP=60;Dels=0.0;FS=2.37;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.973;QD=15.84;ReadPosRankSum=0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    0/1:25,35:60:99:996,0,746
6    13295004    rs20499    C    T    1129.42    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.304;DB;DP=77;Dels=0.0;FS=3.145;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.835;QD=14.67;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    0/1:34,43:77:99:1159,0,1009
6    13295502    rs4602719    T    C    347.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:381,27,0
6    13295515    rs1550526    A    C    357.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:390,30,0
6    13295536    rs454563    C    T    526.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:560,45,0
6    13295752    rs35194435    AG    A    119.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=6;HaplotypeScore=15.8517;IndelType=D;MQ=55.21;MQ0=0;QD=23.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:161,15,0
6    13307824    rs2439537    C    T    3558.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.89;QD=32.35;ReadPosRankSum=0.049;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420456    GT:AD:DP:GQ:PL    1/1:1,108:109:99:3559,238,0
6    13308083    rs2439538    T    C    380.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:413,30,0
6    13308182    rs1899262    T    C    82.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
6    13316658    rs860266    T    C    1671.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.43;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379291    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1705,135,0
6    13316780    rs113833595    CA    C    682.34    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.101;DB;DP=143;FS=15.765;HRun=14;HaplotypeScore=829.0456;IndelType=D;MQ=54.36;MQ0=0;MQRankSum=3.196;QD=4.74;ReadPosRankSum=2.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379291    GT:AD:DP:GQ:PL    0/1:66,63:143:99:721,0,608
6    13317084    rs480122    C    A    242.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=17.31;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    0/1:6,8:14:99:272,0,163
6    13321097    rs2496132    G    A    1520.73    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=5.141;DB;DP=117;Dels=0.0;FS=1.646;HRun=0;HaplotypeScore=4.044;MQ=59.61;MQ0=0;MQRankSum=0.618;QD=13.0;ReadPosRankSum=0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    0/1:63,53:117:99:1551,0,1604
6    13325279    rs2439553    C    T    784.36    PASS    AB=0.194;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.125;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=25.3;ReadPosRankSum=1.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334971    GT:AD:DP:GQ:PL    0/1:6,25:31:99:814,0,165
6    13340151    rs2496169    C    T    1674.33    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=112;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.79;MQ0=0;MQRankSum=1.674;QD=14.95;ReadPosRankSum=0.544;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:54,58:112:99:1704,0,1561
6    13340415    rs2496168    G    C    37.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
6    13584201    rs2804917    T    C    335.93    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=13.44;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359782    GT:AD:DP:GQ:PL    0/1:14,11:25:99:366,0,506
6    13584583    rs2804918    A    G    1367.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8272;MQ=57.75;MQ0=0;QD=26.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359782    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1401,114,0
6    13592135    rs3734674    C    T    470.88    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.202;QD=15.19;ReadPosRankSum=2.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359782    GT:AD:DP:GQ:PL    0/1:13,18:31:99:501,0,296
6    13611810    rs143804040    CCA    C    313.97    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=37.7599;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=31.4;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359782    GT:AD:DP:GQ:PL    0/1:2,8:10:91.92:353,0,92
6    13612078    rs34162626    A    G    2518    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=4.827;DB;DP=218;DS;Dels=0.0;FS=6.413;HRun=1;HaplotypeScore=1.5782;MQ=59.89;MQ0=0;MQRankSum=-0.54;QD=11.55;ReadPosRankSum=-0.75;SNPEFF_AMINO_ACID_CHANGE=E197G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_13612022_13612105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397350    GT:AD:DP:GQ:PL    0/1:114,104:218:99:2548,0,3473
6    13620877    rs3757260    A    T    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011619    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:163,12,0
6    13625712    rs4712058    C    T    87.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451315    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    13634982    rs707816    C    T    119.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474485    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
6    13638243    rs2071836    T    C    328.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=21.87;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011619    GT:AD:DP:GQ:PL    0/1:5,10:15:99:358,0,164
6    13639700    rs6915775    G    A    192.07    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=27.44;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011619    GT:AD:DP:GQ:PL    0/1:1,6:7:17.51:222,0,18
6    13642999    rs3752501    T    C    127.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011619    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
6    13658798    rs6459003    C    T    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.14;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011619    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:67,0,69
6    13659079    rs204232    T    G    1781.29    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.523;DB;DP=150;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=3.6318;MQ=59.69;MQ0=0;MQRankSum=2.616;QD=11.88;ReadPosRankSum=1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011619    GT:AD:DP:GQ:PL    0/1:73,77:150:99:1811,0,2181
6    13794110    rs4715568    C    A    399.49    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.027;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.61;QD=9.99;ReadPosRankSum=1.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC90A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379170    GT:AD:DP:GQ:PL    0/1:26,14:40:99:429,0,745
6    13800626    rs80316633    TAA    T    346.30    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=3.318;DB;DP=25;FS=0.0;HRun=9;HaplotypeScore=84.162;IndelType=D;MQ=60.43;MQ0=0;MQRankSum=-0.093;QD=13.85;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC90A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359495    GT:AD:DP:GQ:PL    0/1:12,13:25:99:385,0,423
6    14131854    rs35118414    A    G    652.78    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.129;DB;DP=52;Dels=0.0;FS=2.388;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.074;QD=12.55;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=N86S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_14131751_14131979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD83;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379153    GT:AD:DP:GQ:PL    0/1:29,23:52:99:683,0,855
6    15374508    rs9383050    A    G    1551.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=38.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1585,117,0
6    15374544    rs2072820    C    T    383.98    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.492;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=1.002;QD=11.64;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    0/1:19,14:33:99:414,0,627
6    15468632    rs9396587    C    T    107.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.24;MQ0=0;QD=26.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:140,12,0
6    15468722    rs67351327    AGGGTGAG    A    532.13    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=125.448;IndelType=D;MQ=49.11;MQ0=0;MQRankSum=-3.599;QD=29.56;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    0/1:10,8:18:99:571,0,1158
6    15496317    .    T    G    46.56    QDFilter2    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.392;DP=54;Dels=0.0;FS=15.079;HRun=2;HaplotypeScore=2.1623;MQ=56.04;MQ0=0;MQRankSum=-0.612;QD=0.86;ReadPosRankSum=2.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    0/1:20,34:54:76.55:77,0,687
6    15501390    .    G    T    1138.64    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=6.292;DP=110;Dels=0.0;FS=1.731;HRun=0;HaplotypeScore=1.6553;MQ=58.99;MQ0=0;MQRankSum=0.817;QD=10.35;ReadPosRankSum=1.641;SNPEFF_AMINO_ACID_CHANGE=R561L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_15501138_15501640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397311    GT:AD:DP:GQ:PL    0/1:67,43:110:99:1169,0,1847
6    15504589    rs760659    T    C    71.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=7.96;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    0/1:6,3:9:99:102,0,190
6    15511429    rs55742636    C    CCCAT    1095.12    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.02;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=121.9976;IndelType=I;MQ=56.74;MQ0=0;MQRankSum=-0.253;QD=37.76;ReadPosRankSum=2.596;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474854    GT:AD:DP:GQ:PL    0/1:16,13:29:99:1134,0,758
6    15513399    rs34554301    CGT    C    239.98    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.931;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=99.6137;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.115;QD=10.0;ReadPosRankSum=1.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474854    GT:AD:DP:GQ:PL    0/1:15,9:24:99:279,0,519
6    15513482    rs2235258    G    A    312    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.339;DB;DP=23;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=54.77;MQ0=0;MQRankSum=-1.2;QD=13.57;ReadPosRankSum=1.446;SNPEFF_AMINO_ACID_CHANGE=L1093;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_15513470_15513653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    0/1:12,11:23:99:342,0,349
6    15513744    rs9396589    G    T    76.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=12.81;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541660    GT:AD:DP:GQ:PL    0/1:2,4:6:59.62:107,0,60
6    15517659    rs2072822    C    A    35.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.78;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    0/1:2,2:4:65.11:65,0,71
6    15524480    rs742106    G    A    471.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JARID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341776    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:504,39,0
6    15546354    rs9349981    T    C    68.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338950    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:101,9,0
6    15593240    rs7758659    T    C    622.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338950    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:655,48,0
6    16306359    rs111168    C    G    50.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=7.23;ReadPosRankSum=-1.3;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244769    GT:AD:DP:GQ:PL    0/1:3,4:7:80.60:81,0,104
6    16306751    rs16885    G    A    586.80    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=43;Dels=0.0;FS=4.506;HRun=0;HaplotypeScore=1.9243;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=13.65;ReadPosRankSum=-0.693;SNPEFF_AMINO_ACID_CHANGE=P753S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_16299343_16307090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244769    GT:AD:DP:GQ:PL    0/1:23,20:43:99:617,0,672
6    16327615    rs179990    A    G    637.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=A309;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_16326625_16328701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244769    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:671,54,0
6    16327864    .    G    GTGC    103.20    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=49.7485;IndelType=I;MQ=64.64;MQ0=0;QD=11.47;SNPEFF_AMINO_ACID_CHANGE=H226RN;SNPEFF_CODON_CHANGE=cac/cGCAac;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_6_16326625_16328701;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244769    GT:AD:DP:GQ:PL    1/1:4,4:9:9.03:144,9,0
6    16753374    rs71706080    AAC    A    220.15    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=107.8308;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=-0.627;QD=15.72;ReadPosRankSum=1.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL137003.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296858    GT:AD:DP:GQ:PL    0/1:6,8:14:99:259,0,306
6    17282989    rs182460091    T    C    596.01    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.093;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.745;QD=14.54;ReadPosRankSum=0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379052    GT:AD:DP:GQ:PL    0/1:19,22:41:99:626,0,563
6    17507670    rs2273011    A    G    217.78    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=1.044;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.044;QD=21.78;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229922    GT:AD:DP:GQ:PL    0/1:1,9:10:8.43:247,0,8
6    17531409    rs4712300    G    A    2089.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229922    GT:AD:DP:GQ:PL    1/1:0,62:63:99:2122,156,0
6    17531435    rs6926595    A    C    862.45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.146;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.33;MQ0=0;MQRankSum=0.365;QD=11.2;ReadPosRankSum=-1.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229922    GT:AD:DP:GQ:PL    0/1:44,33:77:99:892,0,1499
6    17531821    rs6899515    A    G    1048.35    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.837;DB;DP=70;Dels=0.0;FS=1.13;HRun=0;HaplotypeScore=0.9958;MQ=59.39;MQ0=0;MQRankSum=0.756;QD=14.98;ReadPosRankSum=-1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229922    GT:AD:DP:GQ:PL    0/1:33,36:70:99:1078,0,1025
6    17551996    rs13194542    C    T    108.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479291    GT:AD:DP:GQ:PL    0/1:3,4:7:96.59:139,0,97
6    17602710    rs144984337    TTTA    T    543.83    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=3.25;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=98.0919;IndelType=D;MQ=56.71;MQ0=0;MQRankSum=-0.263;QD=22.66;ReadPosRankSum=0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259963    GT:AD:DP:GQ:PL    0/1:10,14:24:99:583,0,522
6    17606413    rs1969830    C    T    81.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259963    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
6    17616493    rs7765156    C    G    433.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259963    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:466,36,0
6    17629616    rs942467    G    A    2982.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_AMINO_ACID_CHANGE=S918;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17628886_17629770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP153;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430136    GT:AD:DP:GQ:PL    1/1:0,82:82:99:3015,223,0
6    17633061    rs2274136    C    T    667.15    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.675;DB;DP=79;Dels=0.0;FS=2.637;HRun=0;HaplotypeScore=3.9324;MQ=55.61;MQ0=0;MQRankSum=3.106;QD=8.44;ReadPosRankSum=-1.17;SNPEFF_AMINO_ACID_CHANGE=A807T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17632881_17633075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP153;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430136    GT:AD:DP:GQ:PL    0/1:37,38:79:99:697,0,851
6    17661743    rs4716172    G    A    2047.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.62;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262077    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2080,159,0
6    17665805    rs4142294    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262077    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
6    17669262    rs11413841    G    GA    30.47    QDFilter2    AB=0.894;AC=1;AF=0.50;AN=2;BaseQRankSum=1.299;DB;DP=59;FS=1.829;HRun=14;HaplotypeScore=360.13;IndelType=I;MQ=52.96;MQ0=0;MQRankSum=0.911;QD=0.52;ReadPosRankSum=-1.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262077    GT:AD:DP:GQ:PL    0/1:48,6:59:69.50:70,0,442
6    17688798    rs11751113    G    A    1369.47    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=0.949;DB;DP=81;Dels=0.0;FS=1.888;HRun=1;HaplotypeScore=2.5698;MQ=58.91;MQ0=0;MQRankSum=0.813;QD=16.91;ReadPosRankSum=0.054;SNPEFF_AMINO_ACID_CHANGE=L55;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17688627_17688849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP153;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262077    GT:AD:DP:GQ:PL    0/1:34,47:81:99:1399,0,906
6    17706404    rs13219815    G    A    182.83    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=18.28;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262077    GT:AD:DP:GQ:PL    0/1:3,7:10:97.38:213,0,97
6    17706493    rs13219933    G    A    277.57    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=14.61;ReadPosRankSum=-1.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262077    GT:AD:DP:GQ:PL    0/1:10,9:19:99:308,0,253
6    17762900    rs142432404    C    T    387.67    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.888;QD=18.46;ReadPosRankSum=0.959;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:9,12:21:99:418,0,283
6    17764279    rs1044654    A    C    845.43    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.518;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6809;MQ=59.48;MQ0=0;MQRankSum=0.322;QD=19.21;ReadPosRankSum=1.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378814    GT:AD:DP:GQ:PL    0/1:18,26:44:99:875,0,595
6    17764755    rs2296197    T    C    1576.58    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.09;DB;DP=129;Dels=0.0;FS=1.499;HRun=0;HaplotypeScore=0.6651;MQ=59.64;MQ0=0;MQRankSum=-0.241;QD=12.22;ReadPosRankSum=-1.973;SNPEFF_AMINO_ACID_CHANGE=P1620;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17764386_17765177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378814    GT:AD:DP:GQ:PL    0/1:69,60:129:99:1607,0,2215
6    17775212    rs150868581    T    C    558.25    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;MQRankSum=-1.388;QD=9.79;ReadPosRankSum=-0.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:36,20:57:99:588,0,1069
6    17777614    rs34701592    C    CT    713.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.389;DB;DP=59;FS=4.928;HRun=13;HaplotypeScore=268.4635;IndelType=I;MQ=56.87;MQ0=0;MQRankSum=0.441;QD=12.1;ReadPosRankSum=-0.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506044    GT:AD:DP:GQ:PL    1/1:25,29:59:52.06:756,52,0
6    17777654    rs1886247    G    A    227.43    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.936;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=56.29;MQ0=0;MQRankSum=0.159;QD=7.11;ReadPosRankSum=-1.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506044    GT:AD:DP:GQ:PL    0/1:21,11:32:99:257,0,686
6    17781450    rs942376    G    A    1332.71    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=108;Dels=0.0;FS=0.733;HRun=0;HaplotypeScore=1.9882;MQ=59.4;MQ0=0;MQRankSum=0.276;QD=12.34;ReadPosRankSum=-0.741;SNPEFF_AMINO_ACID_CHANGE=S1196;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17781408_17781532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378814    GT:AD:DP:GQ:PL    0/1:63,45:108:99:1363,0,1719
6    17785948    rs4716186    A    G    567.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=53.03;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:1,20:21:48.12:601,48,0
6    17785981    rs10686772    C    CAA    172.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=14;FS=0.0;HRun=13;HaplotypeScore=148.7731;IndelType=I;MQ=50.1;MQ0=0;MQRankSum=-0.678;QD=12.34;ReadPosRankSum=-2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:6,6:14:58.26:212,0,58
6    17787886    .    C    CAACAAA    559.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DP=12;FS=0.0;HRun=0;HaplotypeScore=52.819;IndelType=I;MQ=47.72;MQ0=0;MQRankSum=-2.637;QD=46.64;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:6,5:12:99:599,0,277
6    17790191    rs2147211    A    G    733.21    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.537;DB;DP=45;Dels=0.0;FS=1.47;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=16.29;ReadPosRankSum=0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:21,24:45:99:763,0,621
6    17794774    .    T    TA    1082.44    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.08;DP=85;FS=1.953;HRun=9;HaplotypeScore=218.0986;IndelType=I;MQ=60.29;MQ0=0;MQRankSum=1.267;QD=12.73;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1121,0,749
6    17796774    rs112059351    C    CT    112.30    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.139;DB;DP=27;FS=3.979;HRun=16;HaplotypeScore=290.9079;IndelType=I;MQ=53.94;MQ0=0;MQRankSum=0.361;QD=4.16;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:16,8:27:99:151,0,147
6    17799575    rs3734235    A    G    609.38    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.187;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.17;QD=14.86;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=A904;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17799497_17799670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:21,20:41:99:639,0,714
6    17800424    rs150037174    C    T    190.24    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=10.57;ReadPosRankSum=2.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:11,7:18:99:220,0,393
6    17805601    rs71918299    CGTGT    C    365.07    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.171;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=316.9592;IndelType=D;MQ=45.69;MQ0=0;MQRankSum=2.123;QD=10.14;ReadPosRankSum=0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:20,9:36:99:404,0,758
6    17809199    rs6913612    G    A    1568.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503342    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1601,129,0
6    17817235    rs9383327    C    G    312.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:345,30,0
6    17817519    rs41267720    C    T    327.43    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DB;DP=38;Dels=0.0;FS=4.175;HRun=2;HaplotypeScore=1.981;MQ=60.0;MQ0=0;MQRankSum=0.461;QD=8.62;ReadPosRankSum=-0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:24,14:38:99:357,0,738
6    17825785    rs10949456    G    A    36.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:3,2:5:66.85:67,0,78
6    17825888    rs7771879    T    C    1276.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9468;MQ=60.0;MQ0=0;QD=39.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,32:32:96.31:1310,96,0
6    17828506    .    A    G    1011.63    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.676;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.226;QD=16.58;ReadPosRankSum=1.174;SNPEFF_AMINO_ACID_CHANGE=D499;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17828471_17828601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:26,35:61:99:1042,0,782
6    17831419    rs2277080    G    A    1836.03    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=123;Dels=0.0;FS=1.447;HRun=0;HaplotypeScore=1.8893;MQ=59.66;MQ0=0;MQRankSum=-1.259;QD=14.93;ReadPosRankSum=-2.028;SNPEFF_AMINO_ACID_CHANGE=S438;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17831332_17831466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:59,64:123:99:1866,0,1738
6    17834044    rs4712314    G    T    170.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
6    17834086    rs11358140    C    CA    96.23    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.464;DB;DP=34;FS=0.0;HRun=18;HaplotypeScore=495.1973;IndelType=I;MQ=39.64;MQ0=0;MQRankSum=-3.056;QD=2.83;ReadPosRankSum=-1.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:25,5:34:23.45:135,0,23
6    17834198    rs4716189    T    G    2756.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0174;MQ=54.95;MQ0=0;QD=29.02;SNPEFF_AMINO_ACID_CHANGE=I420;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17834192_17834302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,95:95:99:2790,226,0
6    17834213    rs4716190    T    C    2929.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.36;MQ0=0;QD=28.44;SNPEFF_AMINO_ACID_CHANGE=R415;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17834192_17834302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,102:103:99:2962,244,0
6    17834316    rs4716191    T    C    2481.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.48;MQ0=0;QD=33.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2515,190,0
6    17834328    rs4716192    G    A    2287.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=57.01;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2320,172,0
6    17834346    rs4716193    A    G    1878.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=57.53;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1911,144,0
6    17836994    rs12525646    A    G    1430.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.42;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1463,117,0
6    17855864    rs624105    G    C    499.60    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0088;MQ=60.0;MQ0=0;MQRankSum=1.879;QD=13.15;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:21,17:38:99:530,0,729
6    17882140    rs7757737    A    T    168.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=18.72;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=I80N;SNPEFF_CODON_CHANGE=aTt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_17882126_17882609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL023807.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398387    GT:AD:DP:GQ:PL    0/1:3,6:9:99:199,0,101
6    17987229    rs3734237    T    C    456.38    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.958;QD=13.42;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259711    GT:AD:DP:GQ:PL    0/1:16,18:34:99:486,0,525
6    18122506    rs10949483    G    A    548.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=P111L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_18120718_18122851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHLRC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340650    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:581,45,0
6    18134008    rs113956700    G    GA    373.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.327;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=127.4623;IndelType=I;MQ=57.6;MQ0=0;MQRankSum=1.327;QD=17.79;ReadPosRankSum=1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309983    GT:AD:DP:GQ:PL    1/1:6,15:21:43.09:416,43,0
6    18134021    rs2842949    C    A    97.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.04;FS=0.0;HRun=12;HaplotypeScore=2.8489;MQ=58.14;MQ0=0;QD=3.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309983    GT:AD:DP:GQ:PL    1/1:1,25:26:14.97:130,15,0
6    18139214    rs2842934    G    A    2354.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.46;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=I158;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_18139194_18139268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309983    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2388,178,0
6    18139964    rs139743950    GA    G    367.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=71.6947;IndelType=D;MQ=59.94;MQ0=0;QD=17.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309983    GT:AD:DP:GQ:PL    1/1:6,15:21:45.01:410,45,0
6    18143769    rs2518463    A    G    839.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309983    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:873,72,0
6    18148019    rs4449636    G    A    1499.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.102;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-1.024;QD=31.91;ReadPosRankSum=-0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309983    GT:AD:DP:GQ:PL    1/1:1,46:47:75.16:1533,75,0
6    18148247    rs12529220    T    A    340.20    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.159;QD=28.35;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309983    GT:AD:DP:GQ:PL    0/1:1,11:12:9.12:370,0,9
6    18149526    rs3930696    C    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309983    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:119,9,0
6    18166802    rs912528    T    G    169.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297792    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
6    18171477    rs1011620    G    A    161.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297792    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
6    18187916    rs372534    C    T    656.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=36.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297792    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:689,54,0
6    18201961    rs214612    T    C    1033.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=59.45;MQ0=0;MQRankSum=-1.103;QD=30.4;ReadPosRankSum=0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297792    GT:AD:DP:GQ:PL    1/1:1,33:34:93.23:1067,93,0
6    18208188    rs214597    G    C    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297792    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    18213988    rs6903583    C    T    1500.54    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=5.068;DB;DP=97;Dels=0.0;FS=13.557;HRun=0;HaplotypeScore=0.6651;MQ=59.76;MQ0=0;MQRankSum=0.704;QD=15.47;ReadPosRankSum=0.905;SNPEFF_AMINO_ACID_CHANGE=A463;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_18213887_18214012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297792    GT:AD:DP:GQ:PL    0/1:47,50:97:99:1531,0,1290
6    18215303    rs214585    T    C    1015.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=D16;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_18215238_18215360;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546309    GT:AD:DP:GQ:PL    1/1:0,33:33:84.25:1049,84,0
6    18222100    rs3734242    C    T    386.49    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=28;Dels=0.0;FS=6.854;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.921;QD=13.8;ReadPosRankSum=0.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244776    GT:AD:DP:GQ:PL    0/1:15,13:28:99:416,0,528
6    18237661    rs1013062    C    T    755.33    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.131;DB;DP=89;Dels=0.0;FS=3.034;HRun=3;HaplotypeScore=0.9894;MQ=59.06;MQ0=0;MQRankSum=-0.195;QD=8.49;ReadPosRankSum=0.367;SNPEFF_AMINO_ACID_CHANGE=K249;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_18237612_18237747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244776    GT:AD:DP:GQ:PL    0/1:58,30:89:99:785,0,1816
6    18256224    rs66853032    CT    C    115.22    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DB;DP=11;FS=0.0;HRun=13;HaplotypeScore=50.6547;IndelType=D;MQ=56.71;MQ0=0;MQRankSum=-1.393;QD=10.47;ReadPosRankSum=-0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515742    GT:AD:DP:GQ:PL    0/1:3,8:11:0.11:153,0,0
6    18264210    rs11544757    G    A    219.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.182;DB;DP=22;Dels=0.0;FS=4.419;HRun=1;HaplotypeScore=1.6006;MQ=55.88;MQ0=0;MQRankSum=0.788;QD=9.98;ReadPosRankSum=-1.182;SNPEFF_AMINO_ACID_CHANGE=A3;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_18264074_18264227;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244776    GT:AD:DP:GQ:PL    0/1:11,11:22:99:249,0,329
6    18399750    rs2296198    T    C    2242.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.76;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_18399730_18399930;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259939    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2275,169,0
6    18406387    rs6925570    G    A    1931.30    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.947;DB;DP=150;Dels=0.0;FS=3.48;HRun=0;HaplotypeScore=0.9993;MQ=59.69;MQ0=0;MQRankSum=-0.555;QD=12.88;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486622    GT:AD:DP:GQ:PL    0/1:86,63:150:99:1961,0,2583
6    18406500    rs6906391    A    G    393.24    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.164;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=1.002;QD=11.92;ReadPosRankSum=-0.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486622    GT:AD:DP:GQ:PL    0/1:19,14:33:99:423,0,668
6    18459736    rs2057555    A    C    284.87    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.507;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.064;QD=14.24;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259939    GT:AD:DP:GQ:PL    0/1:11,9:20:99:315,0,350
6    18463360    rs543836    C    G    128.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259939    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    18463633    rs9371061    C    T    321.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.94;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.131;QD=14.63;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259939    GT:AD:DP:GQ:PL    0/1:11,11:22:99:352,0,282
6    18463823    rs574505    A    G    49.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF144B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259939    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
6    18572233    rs9396886    A    C    464.86    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.378;DB;DP=33;Dels=0.0;FS=4.17;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.378;QD=14.09;ReadPosRankSum=0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR548A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385041    GT:AD:DP:GQ:PL    0/1:18,15:33:99:495,0,552
6    18572389    rs9383417    C    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR548A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385041    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:74,0,29
6    20102372    .    AAAAAT    A    281.05    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=3.0;DP=24;FS=0.0;HRun=0;HaplotypeScore=329.0572;IndelType=D;MQ=39.46;MQ0=0;MQRankSum=-2.143;QD=11.71;ReadPosRankSum=3.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    0/1:17,7:24:99:320,0,108
6    20102398    .    G    A    41.06    QDFilter2    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.013;DP=37;Dels=0.03;FS=0.0;HRun=6;HaplotypeScore=12.7688;MQ=48.81;MQ0=0;MQRankSum=-4.584;QD=1.08;ReadPosRankSum=-0.356;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    0/1:21,15:37:71.05:71,0,637
6    20109696    rs2457334    A    C    371.64    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=2.808;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.815;QD=20.65;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    0/1:7,11:18:99:402,0,230
6    20113516    rs1980430    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    20124860    rs949550    G    A    740.80    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.611;DB;DP=51;Dels=0.0;FS=2.148;HRun=0;HaplotypeScore=2.3002;MQ=59.55;MQ0=0;MQRankSum=-0.518;QD=14.53;ReadPosRankSum=-0.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536798    GT:AD:DP:GQ:PL    0/1:25,26:51:99:771,0,859
6    20126610    rs34292360    T    C    637.59    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.204;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=58.78;MQ0=0;MQRankSum=0.93;QD=16.78;ReadPosRankSum=1.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    0/1:17,20:38:99:668,0,598
6    20126656    rs2483766    C    T    1332.07    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.783;DB;DP=105;Dels=0.0;FS=6.033;HRun=3;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=0.378;QD=12.69;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    0/1:55,50:105:99:1362,0,1922
6    20131499    rs34263705    C    G    365.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.642;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.376;QD=12.19;ReadPosRankSum=0.863;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    0/1:18,12:30:99:396,0,580
6    20144637    rs1202195    G    A    791.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=37.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:825,63,0
6    20153058    rs144811848    GTTTGT    G    272.36    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=77.1364;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=-0.365;QD=19.45;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324607    GT:AD:DP:GQ:PL    0/1:9,5:14:99:311,0,318
6    20481678    rs4134938    G    C    1222.21    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=66;Dels=0.0;FS=5.408;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.23;QD=18.52;ReadPosRankSum=0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346618    GT:AD:DP:GQ:PL    0/1:24,42:66:99:1252,0,805
6    20481825    rs4134939    T    C    181.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346618    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:214,18,0
6    20487250    rs3806116    T    G    124.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346618    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
6    20488234    rs2328524    G    A    712.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346618    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:745,60,0
6    20546826    rs45559831    C    T    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274695    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:70,0,67
6    20546888    rs9465800    T    G    89.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274695    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
6    20740007    rs9465875    G    C    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274695    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
6    20758704    rs2820000    A    G    91.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.17;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274695    GT:AD:DP:GQ:PL    0/1:5,4:9:99:122,0,171
6    20758760    rs10946406    A    G    260.66    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=14.48;ReadPosRankSum=-0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274695    GT:AD:DP:GQ:PL    0/1:7,11:18:99:291,0,209
6    20758943    rs2820001    G    T    491.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274695    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:525,42,0
6    20759122    rs2820002    T    G    75.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274695    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
6    20846530    rs6941354    C    T    198.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274695    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:231,18,0
6    21065450    rs56087852    A    G    1291.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=P339;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_21065279_21065459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378624    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1325,102,0
6    22292701    rs78697234    A    G    92.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.896;QD=7.75;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306482    GT:AD:DP:GQ:PL    0/1:8,4:12:99:123,0,249
6    22292976    rs1205955    A    T    167.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306482    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:200,18,0
6    23854686    rs1814819    T    C    1831.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=SPTLC1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407089    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1864,141,0
6    24146454    rs16888718    C    T    1004.24    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=58;Dels=0.0;FS=2.579;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.017;QD=17.31;ReadPosRankSum=-0.455;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378475    GT:AD:DP:GQ:PL    0/1:22,36:58:99:1034,0,617
6    24174955    rs9358755    G    C    1063.41    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.57;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.764;QD=15.19;ReadPosRankSum=1.281;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378450    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1093,0,958
6    24178306    rs1419228    G    A    115.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.18;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378450    GT:AD:DP:GQ:PL    0/1:2,4:6:55.72:145,0,56
6    24178998    rs11754435    C    T    120.26    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=57.87;MQ0=0;MQRankSum=-0.717;QD=10.93;ReadPosRankSum=1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378450    GT:AD:DP:GQ:PL    0/1:5,6:11:99:150,0,148
6    24178999    rs1340694    G    A    132.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=14.75;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378450    GT:AD:DP:GQ:PL    0/1:3,6:9:98.57:163,0,99
6    24205074    rs67124244    T    TG    208.69    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=43.1822;IndelType=I;MQ=59.51;MQ0=0;MQRankSum=0.637;QD=13.04;ReadPosRankSum=-1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378450    GT:AD:DP:GQ:PL    0/1:9,7:16:99:248,0,248
6    24205236    rs9467075    G    A    3884.06    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=7.487;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.9324;MQ=59.81;MQ0=0;MQRankSum=0.795;QD=15.66;ReadPosRankSum=-1.527;SNPEFF_AMINO_ACID_CHANGE=V339;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24205230_24205330;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378454    GT:AD:DP:GQ:PL    0/1:119,129:248:99:3884,0,3250
6    24205760    rs4535539    C    T    80.11    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=16.02;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378454    GT:AD:DP:GQ:PL    0/1:1,4:5:25.76:110,0,26
6    24291203    rs2274305    T    C    1079.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_AMINO_ACID_CHANGE=S221G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24291160_24291306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378454    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1113,84,0
6    24302087    rs807703    G    A    1369.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=32.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378454    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1402,108,0
6    24357796    rs33943110    G    A    867.69    PASS    AB=0.256;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=39;Dels=0.0;FS=3.284;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=22.25;ReadPosRankSum=1.077;SNPEFF_AMINO_ACID_CHANGE=A61;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24357686_24358280;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378454    GT:AD:DP:GQ:PL    0/1:10,29:39:99:898,0,245
6    24403196    rs79747846    T    C    218.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=15.62;ReadPosRankSum=0.101;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465103    GT:AD:DP:GQ:PL    0/1:7,7:14:99:249,0,185
6    24403455    rs11695    C    T    206.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=18;Dels=0.0;FS=5.035;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.288;QD=11.49;ReadPosRankSum=-2.443;SNPEFF_AMINO_ACID_CHANGE=R61C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24403153_24403464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274747    GT:AD:DP:GQ:PL    0/1:10,8:18:99:237,0,273
6    24405357    rs2273606    A    G    283.68    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.939;QD=14.93;ReadPosRankSum=1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274747    GT:AD:DP:GQ:PL    0/1:10,9:19:99:314,0,367
6    24416562    rs74293227    C    A    584.12    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.752;DB;DP=40;Dels=0.0;FS=3.103;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.015;QD=14.6;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274747    GT:AD:DP:GQ:PL    0/1:19,21:40:99:614,0,578
6    24416593    rs75878386    A    G    1023.10    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.129;QD=15.99;ReadPosRankSum=-1.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274747    GT:AD:DP:GQ:PL    0/1:28,36:64:99:1053,0,914
6    24418184    rs12663482    C    A    97.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4679;MQ=57.66;MQ0=0;MQRankSum=0.0;QD=9.72;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274747    GT:AD:DP:GQ:PL    0/1:6,4:10:99:127,0,130
6    24418189    rs74293228    C    A    94.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4679;MQ=57.66;MQ0=0;MQRankSum=0.103;QD=9.45;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274747    GT:AD:DP:GQ:PL    0/1:5,5:10:99:124,0,151
6    24418348    rs2793422    G    A    774.50    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.051;DB;DP=62;Dels=0.0;FS=5.388;HRun=1;HaplotypeScore=0.9159;MQ=58.88;MQ0=0;MQRankSum=0.34;QD=12.49;ReadPosRankSum=-0.007;SNPEFF_AMINO_ACID_CHANGE=E241;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24418312_24418464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535061    GT:AD:DP:GQ:PL    0/1:34,28:62:99:804,0,1052
6    24418581    rs2753925    A    T    617.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.05;FS=0.0;HRun=8;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274747    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:650,54,0
6    24418786    rs79527965    T    C    1150.52    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.72;MQ0=0;MQRankSum=-0.006;QD=15.34;ReadPosRankSum=-1.043;SNPEFF_AMINO_ACID_CHANGE=L313;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24418689_24418806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535061    GT:AD:DP:GQ:PL    0/1:34,41:75:99:1181,0,1078
6    24418835    rs79973454    T    TG    808.90    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=5.539;DB;DP=54;FS=1.661;HRun=5;HaplotypeScore=311.4351;IndelType=I;MQ=60.99;MQ0=0;MQRankSum=0.286;QD=14.98;ReadPosRankSum=-0.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465103    GT:AD:DP:GQ:PL    0/1:28,26:54:99:848,0,505
6    24418854    rs45590133    T    C    520.18    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.678;DB;DP=39;Dels=0.0;FS=2.2;HRun=0;HaplotypeScore=0.9159;MQ=60.28;MQ0=0;MQRankSum=0.747;QD=13.34;ReadPosRankSum=-0.229;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465103    GT:AD:DP:GQ:PL    0/1:18,21:39:99:550,0,563
6    24418878    rs45478094    G    A    525.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.828;DB;DP=34;Dels=0.0;FS=6.435;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=15.47;ReadPosRankSum=-0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465103    GT:AD:DP:GQ:PL    0/1:17,17:34:99:556,0,517
6    24418960    rs45448393    C    A    66.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.43;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465103    GT:AD:DP:GQ:PL    0/1:6,3:9:96.91:97,0,218
6    24423149    rs3833457    C    CTG    2311.57    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.692;DB;DP=87;FS=0.0;HRun=0;HaplotypeScore=247.4192;IndelType=I;MQ=59.8;MQ0=1;MQRankSum=-0.236;QD=26.27;ReadPosRankSum=1.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492917    GT:AD:DP:GQ:PL    0/1:38,49:87:99:2351,0,1108
6    24423424    rs1133526    G    A    67.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.33;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:3,3:6:97.96:98,0,110
6    24423824    rs35261004    C    T    371.33    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.996;DB;DP=18;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.725;QD=20.63;ReadPosRankSum=0.091;SNPEFF_AMINO_ACID_CHANGE=P121S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24423812_24424122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543597    GT:AD:DP:GQ:PL    0/1:7,11:18:99:401,0,234
6    24433483    rs9461006    T    C    1202.02    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.461;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.121;QD=12.27;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:53,45:98:99:1232,0,1799
6    24433693    rs76071181    C    T    263.70    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.286;DB;DP=34;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=3.866;MQ=46.25;MQ0=0;MQRankSum=0.776;QD=7.76;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:19,15:34:99:294,0,298
6    24433878    rs145029792    G    A    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
6    24437445    rs1772256    G    A    1614.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.52;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=T698I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24437341_24437517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1648,123,0
6    24437458    rs1042303    T    C    1551.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.56;MQ0=0;QD=29.83;SNPEFF_AMINO_ACID_CHANGE=M694V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24437341_24437517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1584,123,0
6    24437638    rs793673    A    T    206.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:240,18,0
6    24445718    rs793714    A    G    424.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,18:18:42.07:458,42,0
6    24446183    rs793713    C    T    328.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:362,27,0
6    24448061    rs796985    A    C    1126.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,32:32:90.24:1160,90,0
6    24450168    rs5874981    G    GCCT    315.29    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=69.5738;IndelType=I;MQ=53.95;MQ0=0;MQRankSum=-1.532;QD=26.27;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:7,5:12:99:354,0,212
6    24454363    rs61748578    G    A    614.53    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.571;QD=20.48;ReadPosRankSum=-0.07;SNPEFF_AMINO_ACID_CHANGE=Y405;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24454243_24454429;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:8,22:30:99:645,0,212
6    24460679    rs2793434    T    C    1087.11    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.721;DB;DP=81;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-1.886;QD=13.42;ReadPosRankSum=-0.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:39,42:81:99:1117,0,1228
6    24460707    rs2744576    A    T    773.27    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.062;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9968;MQ=60.0;MQ0=0;MQRankSum=-0.941;QD=12.68;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:35,26:61:99:803,0,1122
6    24463055    rs2793442    A    G    494.18    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.351;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7128;MQ=59.3;MQ0=0;MQRankSum=0.81;QD=14.98;ReadPosRankSum=1.459;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474784    GT:AD:DP:GQ:PL    0/1:17,16:33:99:524,0,518
6    24467060    rs35276216    GA    G    413.42    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DB;DP=35;FS=1.324;HRun=3;HaplotypeScore=96.7977;IndelType=D;MQ=60.92;MQ0=0;MQRankSum=0.55;QD=11.81;ReadPosRankSum=0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:20,15:35:99:452,0,755
6    24467633    rs2793445    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    24475517    rs66707391    TATTA    T    395.32    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=70.4491;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=-1.22;QD=26.35;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:7,8:15:99:434,0,489
6    24476553    rs760904    G    A    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    24480025    rs5874986    CAT    C    315.89    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=67.1103;IndelType=D;MQ=61.02;MQ0=0;MQRankSum=-0.387;QD=15.04;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:10,11:21:99:355,0,431
6    24486055    rs2760132    G    A    42.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:73,0,23
6    24486133    .    G    C    150.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.995;MQ=57.66;MQ0=0;MQRankSum=-0.336;QD=15.05;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:5,5:10:99:181,0,132
6    24489652    rs1126617    C    T    586.50    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.556;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.902;QD=13.96;ReadPosRankSum=-0.954;SNPEFF_AMINO_ACID_CHANGE=V30I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24489643_24489850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230036    GT:AD:DP:GQ:PL    0/1:19,23:42:99:616,0,571
6    24489741    rs2076316    A    C    634.74    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=40;Dels=0.0;FS=6.744;HRun=0;HaplotypeScore=0.9159;MQ=58.84;MQ0=0;MQRankSum=0.102;QD=15.87;ReadPosRankSum=0.833;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474784    GT:AD:DP:GQ:PL    0/1:19,21:40:99:665,0,445
6    24503590    rs2760118    C    T    402.08    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DB;DP=22;Dels=0.0;FS=4.419;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.35;QD=18.28;ReadPosRankSum=0.74;SNPEFF_AMINO_ACID_CHANGE=H152Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24503491_24503661;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH5A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000491546    GT:AD:DP:GQ:PL    0/1:6,16:22:99:432,0,166
6    24505030    rs2744583    A    G    220.88    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.38;DB;DP=27;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=58.61;MQ0=0;MQRankSum=-0.321;QD=8.18;ReadPosRankSum=0.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348925    GT:AD:DP:GQ:PL    0/1:16,11:27:99:251,0,513
6    24505196    rs62621664    G    T    441.73    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.258;DB;DP=32;Dels=0.0;FS=3.325;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=1.29;QD=13.8;ReadPosRankSum=0.02;SNPEFF_AMINO_ACID_CHANGE=A149S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24505097_24505213;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH5A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546278    GT:AD:DP:GQ:PL    0/1:14,17:32:99:472,0,432
6    24505221    rs2817220    G    A    465.57    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.285;DB;DP=30;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=15.52;ReadPosRankSum=-0.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348925    GT:AD:DP:GQ:PL    0/1:14,16:30:99:496,0,397
6    24505354    rs2744584    G    A    98.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.421;QD=12.27;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348925    GT:AD:DP:GQ:PL    0/1:4,4:8:99:128,0,141
6    24515330    rs71710241    CT    C    48.84    QDFilter2    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=29;FS=0.0;HRun=19;HaplotypeScore=245.9501;IndelType=D;MQ=52.38;MQ0=0;MQRankSum=0.38;QD=1.68;ReadPosRankSum=1.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348925    GT:AD:DP:GQ:PL    0/1:14,12:29:76.41:88,0,76
6    24528082    rs114857861    A    G    298.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.766;QD=19.92;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348925    GT:AD:DP:GQ:PL    0/1:6,9:15:99:329,0,191
6    24528131    rs71542681    GA    G    236.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.645;DB;DP=28;FS=3.174;HRun=9;HaplotypeScore=116.718;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=0.17;QD=8.46;ReadPosRankSum=0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348925    GT:AD:DP:GQ:PL    0/1:14,14:28:99:276,0,395
6    24551664    rs807534    T    C    75.27    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.584;DB;DP=18;Dels=0.0;FS=9.672;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.796;QD=4.18;ReadPosRankSum=0.584;SNPEFF_AMINO_ACID_CHANGE=Y1004C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24551662_24551753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535378    GT:AD:DP:GQ:PL    0/1:14,4:18:99:105,0,482
6    24551729    rs807535    T    C    169.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.704;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.623;QD=7.08;ReadPosRankSum=0.949;SNPEFF_AMINO_ACID_CHANGE=K946;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24551662_24551753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430948    GT:AD:DP:GQ:PL    0/1:16,8:24:99:200,0,494
6    24556675    rs807538    A    G    274.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378214    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:307,27,0
6    24559281    rs807541    A    G    150.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.614;QD=10.02;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=A853;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24559241_24559383;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430948    GT:AD:DP:GQ:PL    0/1:9,6:15:99:180,0,254
6    24559433    rs3903801    A    G    263.36    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=24;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.753;QD=10.97;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378214    GT:AD:DP:GQ:PL    0/1:13,11:24:99:293,0,335
6    24578272    rs2760157    G    A    1415.87    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=5.186;DB;DP=91;Dels=0.0;FS=0.985;HRun=0;HaplotypeScore=1.4972;MQ=59.75;MQ0=0;MQRankSum=0.109;QD=15.56;ReadPosRankSum=0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378214    GT:AD:DP:GQ:PL    0/1:44,46:91:99:1446,0,1223
6    24582698    rs72007936    CTTTCT    C    283.52    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=95.0384;IndelType=D;MQ=47.37;MQ0=0;MQRankSum=-1.749;QD=21.81;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378214    GT:AD:DP:GQ:PL    0/1:5,8:13:99:323,0,337
6    24583804    rs6901322    T    A    485.24    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.617;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.51;MQ0=0;MQRankSum=-0.336;QD=12.77;ReadPosRankSum=-0.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378214    GT:AD:DP:GQ:PL    0/1:20,18:38:99:515,0,609
6    24588884    rs4504469    C    T    870.40    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.398;DB;DP=62;Dels=0.0;FS=3.414;HRun=0;HaplotypeScore=0.9789;MQ=59.7;MQ0=0;MQRankSum=-0.155;QD=14.04;ReadPosRankSum=0.226;SNPEFF_AMINO_ACID_CHANGE=A266T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24588821_24589013;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430948    GT:AD:DP:GQ:PL    0/1:33,29:62:99:900,0,958
6    24596478    rs4576240    T    G    2987.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5661;MQ=59.73;MQ0=0;MQRankSum=-0.99;QD=35.14;ReadPosRankSum=-0.907;SNPEFF_AMINO_ACID_CHANGE=T133P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24596101_24596846;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535378    GT:AD:DP:GQ:PL    1/1:1,84:85:99:3020,229,0
6    24596756    .    G    A    468.78    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DP=32;Dels=0.0;FS=6.037;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.943;QD=14.65;ReadPosRankSum=1.644;SNPEFF_AMINO_ACID_CHANGE=S40F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24596101_24596846;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0319;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535378    GT:AD:DP:GQ:PL    0/1:15,17:32:99:499,0,361
6    24653376    rs1129644    G    A    4929.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.87;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=N136;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24653211_24653381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545780    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4930,361,0
6    24654443    rs3181238    C    T    130.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478285    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
6    24657897    rs3212232    A    G    80.49    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.1;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341060    GT:AD:DP:GQ:PL    0/1:1,4:5:28.61:110,0,29
6    24657964    rs3212231    T    G    363.97    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.639;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=58.33;MQ0=0;MQRankSum=-1.734;QD=26.0;ReadPosRankSum=0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341060    GT:AD:DP:GQ:PL    0/1:2,12:14:35.24:394,0,35
6    24659071    rs2143340    A    G    60.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=6.68;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341060    GT:AD:DP:GQ:PL    0/1:5,4:9:90.09:90,0,185
6    24659172    rs2143339    G    C    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341060    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
6    24666320    rs11456603    T    TA    258.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.415;DB;DP=24;FS=0.0;HRun=9;HaplotypeScore=57.0511;IndelType=I;MQ=60.9;MQ0=0;MQRankSum=0.197;QD=10.76;ReadPosRankSum=0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341060    GT:AD:DP:GQ:PL    0/1:12,12:24:99:297,0,220
6    24667205    rs17243164    T    TCC    689.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=29.9338;IndelType=I;MQ=61.64;MQ0=0;QD=53.03;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230048    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:731,36,0
6    24714681    .    TA    T    465.29    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=3.484;DP=75;FS=2.725;HRun=12;HaplotypeScore=258.2152;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=0.873;QD=6.2;ReadPosRankSum=2.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378102    GT:AD:DP:GQ:PL    0/1:43,29:75:99:504,0,720
6    24777547    rs111973967    A    AT    278.06    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.039;DB;DP=21;FS=6.69;HRun=9;HaplotypeScore=51.5409;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.24;ReadPosRankSum=-0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230056    GT:AD:DP:GQ:PL    0/1:10,11:21:82.17:317,0,82
6    24809771    rs9379692    A    G    37.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=6.23;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    0/1:3,3:6:67.36:67,0,108
6    24809853    rs9393587    C    T    340.83    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.936;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.612;MQ=60.0;MQ0=0;MQRankSum=-0.88;QD=16.23;ReadPosRankSum=0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    0/1:10,11:21:99:371,0,352
6    24809874    rs55640933    A    C    341.58    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.277;QD=14.85;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    0/1:12,11:23:99:372,0,421
6    24809881    rs9358801    T    A    367.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.396;DB;DP=24;Dels=0.0;FS=6.214;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.703;QD=15.29;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    0/1:12,12:24:99:397,0,392
6    24818785    rs9358802    A    G    302.40    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.834;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.177;QD=11.63;ReadPosRankSum=0.575;SNPEFF_AMINO_ACID_CHANGE=A1000;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24818770_24818853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    0/1:14,12:26:99:332,0,436
6    24825511    rs9358804    A    G    2338.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=30.77;SNPEFF_AMINO_ACID_CHANGE=S937;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24825454_24825656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538035    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2372,190,0
6    24828318    rs35374726    C    T    296.97    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.573;QD=18.56;ReadPosRankSum=0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463828    GT:AD:DP:GQ:PL    0/1:6,10:16:99:327,0,189
6    24828490    rs9461073    C    T    301.12    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.764;DB;DP=17;Dels=0.0;FS=6.117;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.955;QD=17.71;ReadPosRankSum=-0.452;SNPEFF_AMINO_ACID_CHANGE=R847Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_24828365_24828523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538035    GT:AD:DP:GQ:PL    0/1:6,11:17:99:331,0,140
6    24830680    rs79868980    C    G    829.12    PASS    AB=0.34;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.212;DB;DP=50;Dels=0.0;FS=3.028;HRun=0;HaplotypeScore=1.1567;MQ=59.54;MQ0=0;MQRankSum=-0.41;QD=16.58;ReadPosRankSum=0.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    0/1:17,33:50:99:859,0,435
6    24830927    rs144964125    G    A    108.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=9.85;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    0/1:5,5:11:99:138,0,177
6    24836161    rs6901565    C    A    93.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378023    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
6    24839160    rs12662984    T    G    86.02    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.034;QD=7.82;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378023    GT:AD:DP:GQ:PL    0/1:7,4:11:99:116,0,252
6    24850715    rs7761191    A    G    2033.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=59.61;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2066,163,0
6    24865323    rs4711065    A    G    113.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:146,12,0
6    24865328    rs4711066    G    A    131.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
6    24869544    rs71544604    ATTT    A    231.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=18;HaplotypeScore=92.1876;IndelType=D;MQ=55.35;MQ0=0;QD=17.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    1/1:4,6:13:32.72:274,33,0
6    24873314    rs9467340    C    T    667.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:701,54,0
6    24875814    rs2255337    C    G    1365.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;QD=30.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259698    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1399,117,0
6    25082262    rs12197057    T    G    113.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.88;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490939    GT:AD:DP:GQ:PL    0/1:2,4:6:64.82:143,0,65
6    25084691    rs303007    C    T    1310.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490939    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1343,102,0
6    25084718    rs303006    A    G    1514.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.13;SNPEFF_AMINO_ACID_CHANGE=V478A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25084708_25084804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377989    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1548,123,0
6    25086968    rs895673    G    A    597.49    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.702;DB;DP=44;Dels=0.0;FS=3.0;HRun=0;HaplotypeScore=0.9665;MQ=59.48;MQ0=0;MQRankSum=0.188;QD=13.58;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377989    GT:AD:DP:GQ:PL    0/1:21,23:44:99:627,0,537
6    25092031    rs9654585    T    A    318.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424282    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:351,27,0
6    25092335    rs3818267    A    G    830.52    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.93;DB;DP=42;Dels=0.0;FS=2.018;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.401;QD=19.77;ReadPosRankSum=2.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424282    GT:AD:DP:GQ:PL    0/1:16,26:42:99:861,0,499
6    25092425    rs3818268    T    C    109.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424282    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
6    25092465    rs9467392    C    T    43.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.86;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424282    GT:AD:DP:GQ:PL    0/1:1,3:4:33.98:73,0,34
6    25097450    rs392852    T    C    1639.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377989    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1673,126,0
6    25106745    rs2295737    A    G    1392.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=L225P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25106587_25106757;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424282    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1425,102,0
6    25106783    rs1923195    G    A    1040.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399346    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1074,78,0
6    25108989    rs66512750    AC    A    665.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=3;HaplotypeScore=123.9974;IndelType=D;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458373    GT:AD:DP:GQ:PL    1/1:1,19:20:57.18:707,57,0
6    25110059    rs3818271    T    A    179.47    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=13.81;ReadPosRankSum=1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377989    GT:AD:DP:GQ:PL    0/1:6,7:13:99:209,0,183
6    25115296    rs2273671    G    T    1046.56    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.255;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=15.17;ReadPosRankSum=0.943;SNPEFF_AMINO_ACID_CHANGE=L9I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25115219_25115328;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377989    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1077,0,903
6    25115527    rs2166683    G    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377989    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
6    25140637    rs303014    C    G    1034.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=37.64;MQ0=6;QD=22.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377993    GT:AD:DP:GQ:PL    1/1:0,46:46:93.21:1067,93,0
6    25140852    rs303013    A    G    325.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.93;MQ0=8;QD=10.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377993    GT:AD:DP:GQ:PL    1/1:0,31:31:38.99:359,39,0
6    25141005    rs602519    A    G    419.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.91;MQ0=3;QD=16.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377993    GT:AD:DP:GQ:PL    1/1:0,25:26:45.04:453,45,0
6    25141684    rs12198209    C    T    213.44    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.83;MQ0=0;MQRankSum=-1.381;QD=16.42;ReadPosRankSum=2.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377993    GT:AD:DP:GQ:PL    0/1:5,8:13:99:243,0,160
6    25279839    rs72361376    CT    C    51.36    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=25;FS=0.0;HRun=14;HaplotypeScore=402.913;IndelType=D;MQ=34.24;MQ0=0;MQRankSum=-0.382;QD=2.05;ReadPosRankSum=0.382;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461945    GT:AD:DP:GQ:PL    0/1:4,15:25:44.86:90,0,45
6    25280119    rs6914799    C    A    4352.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.08;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,126:126:99:4353,340,0
6    25420344    rs913455    C    G    5999.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.81;MQ=59.77;MQ0=0;QD=33.33;SNPEFF_AMINO_ACID_CHANGE=V47;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25420342_25420392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,180:180:99:6000,454,0
6    25426640    rs56307153    AT    A    419.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.654;DB;DP=54;FS=0.0;HRun=17;HaplotypeScore=346.4909;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=1.26;QD=7.77;ReadPosRankSum=-0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:13,20:54:99:462,103,0
6    25426656    .    TTA    T    40.52    QDFilter2    AB=0.922;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DP=59;FS=0.0;HRun=0;HaplotypeScore=430.3305;IndelType=D;MQ=55.97;MQ0=0;MQRankSum=-0.778;QD=0.69;ReadPosRankSum=0.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:54,5:59:79.55:80,0,411
6    25435654    rs34314506    AT    A    784.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.569;DB;DP=50;FS=4.443;HRun=2;HaplotypeScore=121.594;IndelType=D;MQ=59.84;MQ0=0;MQRankSum=1.475;QD=15.7;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:25,25:50:99:824,0,974
6    25450026    rs9295661    C    A    293.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
6    25451006    .    T    TC    200.31    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DP=13;FS=0.0;HRun=4;HaplotypeScore=144.0126;IndelType=I;MQ=45.98;MQ0=0;MQRankSum=0.896;QD=15.41;ReadPosRankSum=-2.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:8,5:13:90.74:239,0,91
6    25452223    rs55733029    T    C    104.59    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=3.8367;MQ=39.71;MQ0=0;MQRankSum=-2.511;QD=6.97;ReadPosRankSum=3.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:5,10:15:94.38:135,0,94
6    25492296    rs1034051    C    T    842.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:875,69,0
6    25492364    rs1034050    A    G    290.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
6    25495218    rs447724    C    T    2251.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.58;MQ0=0;QD=40.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2284,166,0
6    25500709    rs301393    T    G    41.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
6    25510648    rs7453991    T    C    258.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
6    25537934    rs212934    T    C    550.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:584,42,0
6    25554180    rs214049    C    G    1233.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,36:36:93.31:1267,93,0
6    25557149    rs61652232    T    TAA    1669.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=3;HaplotypeScore=243.7216;IndelType=I;MQ=55.94;MQ0=0;QD=37.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:10,31:44:99:1712,114,0
6    25581123    .    G    GT    725.13    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.565;DP=48;FS=2.779;HRun=7;HaplotypeScore=105.131;IndelType=I;MQ=60.23;MQ0=0;MQRankSum=0.265;QD=15.11;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:23,25:48:99:764,0,465
6    25600968    rs10456324    G    A    158.28    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.176;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.096;QD=10.55;ReadPosRankSum=-0.772;SNPEFF_AMINO_ACID_CHANGE=A1182;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25600542_25600974;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:7,8:15:99:188,0,240
6    25605091    rs1012899    G    A    704.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_AMINO_ACID_CHANGE=G1202S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25605040_25605121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:738,54,0
6    25606181    rs2294345    G    A    109.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.361;QD=10.94;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:5,5:10:99:139,0,144
6    25606678    rs742131    C    T    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:65,0,34
6    25610203    rs11962024    A    T    1409.16    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=2.606;DB;DP=86;Dels=0.0;FS=5.472;HRun=1;HaplotypeScore=2.7956;MQ=59.73;MQ0=0;MQRankSum=-0.895;QD=16.39;ReadPosRankSum=1.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329474    GT:AD:DP:GQ:PL    0/1:39,47:86:99:1439,0,1252
6    25652568    rs76783174    AG    A    359.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.293;DB;DP=24;FS=0.0;HRun=2;HaplotypeScore=76.6413;IndelType=D;MQ=59.03;MQ0=0;MQRankSum=-0.031;QD=14.98;ReadPosRankSum=2.062;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    0/1:12,12:24:99:399,0,414
6    25653566    rs34327841    T    TA    280.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.573;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=35.8408;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=0.683;QD=17.55;ReadPosRankSum=-0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    0/1:8,8:16:99:320,0,288
6    25661887    rs2072847    A    T    287.75    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.858;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=-0.619;QD=9.28;ReadPosRankSum=0.252;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    0/1:21,10:31:99:318,0,704
6    25669636    rs2064127    A    T    215.82    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=16.6;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    0/1:6,7:13:99:246,0,211
6    25669669    rs2328891    G    A    287.25    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.0;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=13.06;ReadPosRankSum=-2.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    0/1:12,10:22:99:317,0,440
6    25669833    rs2272825    T    C    687.34    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=41;Dels=0.0;FS=5.618;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=16.76;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    0/1:18,23:41:99:717,0,502
6    25682262    rs3765236    A    C    287.30    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=17;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=16.9;ReadPosRankSum=2.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    0/1:8,9:17:99:317,0,263
6    25689378    rs11327870    AT    A    518.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DB;DP=33;FS=12.203;HRun=13;HaplotypeScore=105.5015;IndelType=D;MQ=60.33;MQ0=0;MQRankSum=-0.121;QD=15.71;ReadPosRankSum=-1.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    1/1:4,28:33:33.15:560,33,0
6    25701667    rs56080178    T    C    202.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.204;DB;DP=27;Dels=0.0;FS=4.586;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.816;QD=7.5;ReadPosRankSum=-2.284;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    0/1:15,12:27:99:233,0,551
6    25701691    rs6928384    C    G    679.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334979    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:713,54,0
6    25726343    rs6940348    C    T    5315.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.73;MQ0=0;QD=33.86;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2BA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274764    GT:AD:DP:GQ:PL    1/1:0,157:157:99:5316,385,0
6    25726621    rs9467583    C    T    1231.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DB;DP=38;Dels=0.0;FS=3.016;HRun=0;HaplotypeScore=3.152;MQ=59.39;MQ0=0;MQRankSum=1.144;QD=32.41;ReadPosRankSum=-1.34;SNPEFF_AMINO_ACID_CHANGE=G45;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25726291_25726790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297012    GT:AD:DP:GQ:PL    1/1:2,36:38:44.30:1265,44,0
6    25769349    rs1892251    T    C    767.25    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.335;DB;DP=71;Dels=0.0;FS=3.295;HRun=1;HaplotypeScore=1.9996;MQ=59.35;MQ0=0;MQRankSum=0.694;QD=10.81;ReadPosRankSum=0.657;SNPEFF_AMINO_ACID_CHANGE=A22;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25769213_25769418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397076    GT:AD:DP:GQ:PL    0/1:41,30:71:99:797,0,1166
6    25770239    rs2328893    A    G    829.12    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.492;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9933;MQ=59.27;MQ0=0;MQRankSum=1.249;QD=13.16;ReadPosRankSum=-1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377905    GT:AD:DP:GQ:PL    0/1:37,26:63:99:859,0,1312
6    25770866    rs3757130    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377905    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    25773809    rs2275906    A    G    560.76    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.5;DB;DP=34;Dels=0.0;FS=1.373;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.638;QD=16.49;ReadPosRankSum=1.121;SNPEFF_AMINO_ACID_CHANGE=L298;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25773741_25773902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377905    GT:AD:DP:GQ:PL    0/1:16,18:34:99:591,0,508
6    25776949    rs11754288    G    A    543.28    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.516;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=2.209;QD=13.25;ReadPosRankSum=-0.954;SNPEFF_AMINO_ACID_CHANGE=A142T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25776823_25778016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397076    GT:AD:DP:GQ:PL    0/1:22,19:41:99:573,0,793
6    25777359    rs73736908    G    A    65.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=10.9;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377905    GT:AD:DP:GQ:PL    0/1:3,3:6:95.39:95,0,100
6    25778055    rs12201071    C    T    90.74    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9987;MQ=57.05;MQ0=0;MQRankSum=-0.684;QD=11.34;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377905    GT:AD:DP:GQ:PL    0/1:3,5:8:99:121,0,105
6    25779066    rs73733808    A    G    66.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.1;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244527    GT:AD:DP:GQ:PL    0/1:3,3:6:96.61:97,0,102
6    25798932    rs1165215    G    A    199.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.618;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=9.48;ReadPosRankSum=-0.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468082    GT:AD:DP:GQ:PL    0/1:14,7:21:99:229,0,439
6    25801057    rs1165210    T    C    1624.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244527    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1658,120,0
6    25801319    rs1165209    G    A    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9993;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.53;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244527    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,145
6    25812069    rs10498730    A    G    223.89    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=23;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.512;QD=9.73;ReadPosRankSum=-0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244527    GT:AD:DP:GQ:PL    0/1:15,8:23:99:254,0,460
6    25813150    rs1165196    G    A    307.38    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.384;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.2;MQ0=0;MQRankSum=-0.959;QD=9.61;ReadPosRankSum=-0.269;SNPEFF_AMINO_ACID_CHANGE=T269I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25813059_25813220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244527    GT:AD:DP:GQ:PL    0/1:19,13:32:99:337,0,650
6    25849620    rs942379    A    G    428.22    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.645;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.32;MQ0=0;MQRankSum=-0.922;QD=12.59;ReadPosRankSum=-0.705;SNPEFF_AMINO_ACID_CHANGE=S1;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25849602_25849622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000505420    GT:AD:DP:GQ:PL    0/1:15,19:34:99:458,0,359
6    25849779    rs1165189    A    C    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.98;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308453    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,111
6    25849838    rs1165188    A    G    87.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=9.7;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308453    GT:AD:DP:GQ:PL    0/1:5,4:9:99:117,0,174
6    25862466    rs1165165    C    T    468.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.115;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=58.48;MQ0=0;MQRankSum=0.131;QD=10.19;ReadPosRankSum=0.609;SNPEFF_AMINO_ACID_CHANGE=A100T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25862461_25862672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360657    GT:AD:DP:GQ:PL    0/1:27,18:46:99:499,0,813
6    25914801    rs2071299    G    A    72.88    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7815;MQ=58.91;MQ0=0;MQRankSum=-0.848;QD=3.17;ReadPosRankSum=-1.29;SNPEFF_AMINO_ACID_CHANGE=P437S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25914773_25914898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265425    GT:AD:DP:GQ:PL    0/1:16,6:23:99:103,0,456
6    25914901    rs2071298    G    A    163.03    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.357;DB;DP=17;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=9.59;ReadPosRankSum=1.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265425    GT:AD:DP:GQ:PL    0/1:11,6:17:99:193,0,372
6    25916979    rs1865760    C    T    490.29    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.719;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.614;QD=10.9;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=L288;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_25916913_25917074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265425    GT:AD:DP:GQ:PL    0/1:24,20:45:99:520,0,688
6    25918688    rs3752421    G    A    413    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=5.089;DB;DP=38;Dels=0.0;FS=11.957;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.51;QD=10.87;ReadPosRankSum=1.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265425    GT:AD:DP:GQ:PL    0/1:23,15:38:99:443,0,625
6    25921761    rs9358893    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    25924158    rs1540273    T    C    367.29    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.338;DB;DP=31;Dels=0.0;FS=2.176;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=11.85;ReadPosRankSum=1.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265425    GT:AD:DP:GQ:PL    0/1:18,13:31:99:397,0,489
6    25925823    rs7770139    A    G    550.68    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.31;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=57.87;MQ0=0;MQRankSum=-0.666;QD=12.52;ReadPosRankSum=-1.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265425    GT:AD:DP:GQ:PL    0/1:18,26:44:99:581,0,589
6    26017171    rs2237231    C    T    247.19    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.324;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=16.48;ReadPosRankSum=0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244573    GT:AD:DP:GQ:PL    0/1:7,8:15:99:277,0,249
6    26021813    rs9467664    A    T    75.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.19;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357647    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:106,0,68
6    26027135    rs3752420    G    A    306.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.88;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.859;QD=10.96;ReadPosRankSum=-0.487;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244661    GT:AD:DP:GQ:PL    0/1:16,12:28:99:337,0,460
6    26027433    rs3752419    G    A    728.20    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.748;DB;DP=42;Dels=0.0;FS=4.442;HRun=0;HaplotypeScore=0.6651;MQ=58.89;MQ0=0;MQRankSum=0.068;QD=17.34;ReadPosRankSum=0.829;SNPEFF_AMINO_ACID_CHANGE=A16;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26027124_26027480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377364    GT:AD:DP:GQ:PL    0/1:19,22:42:99:758,0,522
6    26031868    rs2213284    G    A    524.88    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.5;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.526;QD=12.8;ReadPosRankSum=-1.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259791    GT:AD:DP:GQ:PL    0/1:21,20:41:99:555,0,702
6    26033506    rs2230655    G    A    1246.77    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.432;DB;DP=69;Dels=0.0;FS=2.102;HRun=2;HaplotypeScore=2.4344;MQ=59.39;MQ0=0;MQRankSum=1.041;QD=18.07;ReadPosRankSum=-2.606;SNPEFF_AMINO_ACID_CHANGE=L97;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26033320_26033796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259791    GT:AD:DP:GQ:PL    0/1:27,42:69:99:1277,0,814
6    26033809    rs3842706    T    TAAG    1690.29    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=73;FS=1.427;HRun=0;HaplotypeScore=294.6534;IndelType=I;MQ=55.9;MQ0=0;MQRankSum=-3.253;QD=23.15;ReadPosRankSum=0.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358910    GT:AD:DP:GQ:PL    0/1:48,25:73:99:1729,0,1573
6    26033828    rs3830054    G    A    366.75    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.941;DB;DP=46;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=59.23;MQ0=0;MQRankSum=0.058;QD=7.97;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358910    GT:AD:DP:GQ:PL    0/1:30,16:46:99:397,0,1071
6    26044369    rs2032447    A    G    389.25    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=28;Dels=0.0;FS=1.721;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.898;QD=13.9;ReadPosRankSum=0.024;SNPEFF_AMINO_ACID_CHANGE=Q51;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26044295_26044555;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358910    GT:AD:DP:GQ:PL    0/1:13,15:28:99:419,0,374
6    26045737    rs3752418    C    G    974.12    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=91;Dels=0.0;FS=0.928;HRun=2;HaplotypeScore=1.9993;MQ=60.0;MQ0=0;MQRankSum=0.459;QD=10.7;ReadPosRankSum=0.341;SNPEFF_AMINO_ACID_CHANGE=T33;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26045639_26046097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540144    GT:AD:DP:GQ:PL    0/1:51,39:91:99:1004,0,1571
6    26045929    rs3752416    T    C    914.10    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=59.69;MQ0=0;MQRankSum=1.635;QD=15.24;ReadPosRankSum=0.205;SNPEFF_AMINO_ACID_CHANGE=C97;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26045639_26046097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540144    GT:AD:DP:GQ:PL    0/1:26,33:60:99:944,0,794
6    26055865    rs78906170    G    GTC    259.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=16.8503;IndelType=I;MQ=61.53;MQ0=0;QD=37.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343677    GT:AD:DP:GQ:PL    1/1:1,5:7:18.05:301,18,0
6    26056549    rs10425    A    G    947.41    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=78;Dels=0.0;FS=13.917;HRun=1;HaplotypeScore=0.9894;MQ=59.41;MQ0=0;MQRankSum=0.354;QD=12.15;ReadPosRankSum=-0.969;SNPEFF_AMINO_ACID_CHANGE=S36;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26055968_26056699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343677    GT:AD:DP:GQ:PL    0/1:43,35:78:99:977,0,1376
6    26091336    rs2071303    T    C    772.59    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.8;DB;DP=73;Dels=0.0;FS=0.913;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;MQRankSum=-0.873;QD=10.58;ReadPosRankSum=0.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HFE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309234    GT:AD:DP:GQ:PL    0/1:44,29:73:99:803,0,1193
6    26094367    rs1572982    G    A    543.32    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.412;DB;DP=35;Dels=0.0;FS=3.581;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.758;QD=15.52;ReadPosRankSum=-2.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HFE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483782    GT:AD:DP:GQ:PL    0/1:17,18:35:99:573,0,571
6    26096748    rs1045537    G    C    913.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.037;DB;DP=60;Dels=0.0;FS=2.248;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.495;QD=15.22;ReadPosRankSum=1.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HFE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309234    GT:AD:DP:GQ:PL    0/1:30,30:60:99:943,0,962
6    26104448    rs198852    A    G    597.18    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.334;DB;DP=61;Dels=0.0;FS=1.021;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.966;QD=9.79;ReadPosRankSum=-0.087;SNPEFF_AMINO_ACID_CHANGE=L91;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26104104_26104518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377803    GT:AD:DP:GQ:PL    0/1:36,25:61:99:627,0,918
6    26104632    rs198851    T    G    201.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1T;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338379    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:234,18,0
6    26107790    rs198845    G    T    808.67    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.04;DB;DP=74;Dels=0.0;FS=4.58;HRun=2;HaplotypeScore=2.6812;MQ=59.06;MQ0=0;MQRankSum=-1.206;QD=10.93;ReadPosRankSum=-0.116;SNPEFF_AMINO_ACID_CHANGE=Q178K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26107640_26108364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1T;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338379    GT:AD:DP:GQ:PL    0/1:44,30:74:99:839,0,1340
6    26108282    rs198844    C    G    1030.38    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.621;DB;DP=64;Dels=0.0;FS=2.26;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.258;QD=16.1;ReadPosRankSum=1.389;SNPEFF_AMINO_ACID_CHANGE=V14L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26107640_26108364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1T;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338379    GT:AD:DP:GQ:PL    0/1:27,37:64:99:1060,0,766
6    26123629    rs198821    T    C    174.68    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=15.88;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2BC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314332    GT:AD:DP:GQ:PL    0/1:5,6:11:99:205,0,128
6    26124243    rs198820    G    A    206.43    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=20.64;ReadPosRankSum=-1.214;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314088    GT:AD:DP:GQ:PL    0/1:3,7:10:95.20:236,0,95
6    26124303    rs16891334    T    C    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314088    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,72
6    26124430    rs198819    C    T    306.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.054;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=11.8;ReadPosRankSum=-0.026;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_26124418_26124977;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314088    GT:AD:DP:GQ:PL    0/1:14,12:26:99:337,0,470
6    26124634    rs4645    C    T    627.46    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=64;Dels=0.0;FS=1.07;HRun=0;HaplotypeScore=0.8321;MQ=59.64;MQ0=0;MQRankSum=-0.081;QD=9.8;ReadPosRankSum=-0.775;SNPEFF_AMINO_ACID_CHANGE=Y58;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26124418_26124977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314088    GT:AD:DP:GQ:PL    0/1:38,26:64:99:657,0,1169
6    26156993    rs61729264    G    T    230.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.252;QD=9.6;ReadPosRankSum=-1.371;SNPEFF_AMINO_ACID_CHANGE=A125;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26156559_26157343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304218    GT:AD:DP:GQ:PL    0/1:15,9:24:99:260,0,488
6    26199524    rs438534    A    G    460.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341023    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:493,36,0
6    26200083    rs1059486    A    G    830.81    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=5.182;DB;DP=74;Dels=0.0;FS=7.628;HRun=0;HaplotypeScore=1.4105;MQ=57.22;MQ0=0;MQRankSum=-0.925;QD=11.23;ReadPosRankSum=-0.815;SNPEFF_AMINO_ACID_CHANGE=V99;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26199748_26200942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2BF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359985    GT:AD:DP:GQ:PL    0/1:41,33:74:99:861,0,1209
6    26205293    rs806795    G    A    105.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.58;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2BF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359985    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,211
6    26235018    rs138119279    T    C    1031.21    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.621;DB;DP=90;Dels=0.0;FS=1.77;HRun=1;HaplotypeScore=0.5784;MQ=59.79;MQ0=0;MQRankSum=-1.133;QD=11.46;ReadPosRankSum=0.67;SNPEFF_AMINO_ACID_CHANGE=A48;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26234440_26235216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244534    GT:AD:DP:GQ:PL    0/1:51,39:90:99:1061,0,1704
6    26240597    rs73736567    G    A    49.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=15;Dels=0.0;FS=4.472;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=3.27;ReadPosRankSum=0.551;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_26240561_26240976;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377745    GT:AD:DP:GQ:PL    0/1:10,5:15:79.11:79,0,323
6    26271439    rs41266825    C    A    981.33    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=2.964;DB;DP=83;Dels=0.0;FS=1.853;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.156;QD=11.82;ReadPosRankSum=-1.136;SNPEFF_AMINO_ACID_CHANGE=S58;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26271146_26271612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H3G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305910    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1011,0,1313
6    26285683    rs2393593    T    C    785.63    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.5;MQ0=0;MQRankSum=0.41;QD=17.08;ReadPosRankSum=1.296;SNPEFF_AMINO_ACID_CHANGE=G15;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26285262_26285762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289352    GT:AD:DP:GQ:PL    0/1:20,26:46:99:816,0,574
6    26373490    .    TGG    T    218.15    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=3.871;DP=98;FS=57.642;HRun=2;HaplotypeScore=820.5022;IndelType=D;MQ=40.9;MQ0=0;MQRankSum=-2.01;QD=2.2;ReadPosRankSum=-2.019;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524459    GT:AD:DP:GQ:PL    0/1:81,9:98:99:257,0,1924
6    26373495    .    A    T    71.35    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.538;DP=106;Dels=0.04;FS=75.632;HRun=4;HaplotypeScore=76.645;MQ=42.9;MQ0=0;MQRankSum=-5.274;QD=0.65;ReadPosRankSum=2.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524459    GT:AD:DP:GQ:PL    0/1:56,50:106:99:101,0,1609
6    26390152    .    C    A    410.43    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.912;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=17.1;ReadPosRankSum=1.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471116    GT:AD:DP:GQ:PL    0/1:11,13:24:99:440,0,381
6    26392934    rs2072802    C    T    735.94    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DB;DP=50;Dels=0.0;FS=1.164;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.33;QD=14.72;ReadPosRankSum=-0.041;SNPEFF_AMINO_ACID_CHANGE=L227;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26392603_26393235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN2A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000482536    GT:AD:DP:GQ:PL    0/1:24,26:50:99:766,0,733
6    26428842    rs1741740    A    G    640.31    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.15;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.122;QD=15.62;ReadPosRankSum=-1.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP1-45P21.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463944    GT:AD:DP:GQ:PL    0/1:20,21:41:99:670,0,601
6    26460170    rs11267390    C    CCACAGGGAGATTCCACAGGGA    4641.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=260.1531;IndelType=I;MQ=33.42;MQ0=0;QD=232.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BTN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265424    GT:AD:DP:GQ:PL    1/1:14,6:20:51.17:4642,51,0
6    26460254    rs2393664    T    C    150.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BTN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265424    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:184,15,0
6    26463321    rs3734540    A    C    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BTN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265424    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
6    26466225    rs1977198    A    C    2707.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DB;DP=76;Dels=0.0;FS=4.337;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.821;QD=35.63;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BTN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493173    GT:AD:DP:GQ:PL    1/1:1,75:76:99:2741,168,0
6    26466389    rs1977199    G    A    2873.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BTN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493173    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2907,217,0
6    26466392    rs1977200    G    A    2861.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BTN2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493173    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2895,214,0
6    26501471    rs10712245    AG    A    1181.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=4;HaplotypeScore=87.4116;IndelType=D;MQ=60.63;MQ0=0;QD=34.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377586    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1223,102,0
6    26501777    rs2255070    C    G    263.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244513    GT:AD:DP:GQ:PL    1/1:0,11:11:27.02:297,27,0
6    26501897    rs1321479    T    C    448.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=32.02;SNPEFF_AMINO_ACID_CHANGE=S53;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26501818_26502165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244513    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:481,36,0
6    26505036    rs9467774    C    A    321.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244513    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:354,27,0
6    26505135    rs3736780    C    T    1898.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244513    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1931,141,0
6    26505362    rs3736781    G    A    2404.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=A213T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26505153_26505434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244513    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2437,187,0
6    26505403    rs3736782    C    A    2030.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.61;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=G226;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26505153_26505434;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244513    GT:AD:DP:GQ:PL    1/1:0,58:59:99:2064,154,0
6    26507319    rs2208331    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244513    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    26509330    rs9393728    C    G    3583.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3711;MQ=59.79;MQ0=0;QD=33.18;SNPEFF_AMINO_ACID_CHANGE=D471E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26509265_26510163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTN1A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377586    GT:AD:DP:GQ:PL    1/1:0,107:108:99:3583,277,0
6    26545308    rs1884946    C    G    1111.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328219    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1144,84,0
6    26545632    rs4871    G    A    5519.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.927;MQ=59.49;MQ0=0;QD=30.5;SNPEFF_AMINO_ACID_CHANGE=G66;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26545355_26547160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328219    GT:AD:DP:GQ:PL    1/1:0,181:181:99:5520,430,0
6    26597333    rs3800302    A    G    505.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=K41;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26597180_26597451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274849    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:539,42,0
6    26598188    rs3800303    A    G    478.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=28.13;SNPEFF_AMINO_ACID_CHANGE=G96;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_26598142_26598338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274849    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:511,45,0
6    26846712    rs11758407    T    A    543.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.535;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.33;MQ0=0;MQRankSum=0.228;QD=14.3;ReadPosRankSum=1.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383335    GT:AD:DP:GQ:PL    0/1:19,19:38:99:574,0,573
6    26851209    rs143968699    G    C    394.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=11.97;MQ0=50;QD=3.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383335    GT:AD:DP:GQ:PL    1/1:0,104:105:42.04:428,42,0
6    26851448    rs10807012    G    A    367.88    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.62;MQ0=0;MQRankSum=0.38;QD=19.36;ReadPosRankSum=0.803;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383335    GT:AD:DP:GQ:PL    0/1:7,12:19:99:398,0,217
6    26864789    rs4079824    A    G    802.55    MQFilter40    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.664;DB;DP=69;Dels=0.0;FS=1.038;HRun=0;HaplotypeScore=1.5317;MQ=39.71;MQ0=8;MQRankSum=0.211;QD=11.63;ReadPosRankSum=0.321;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    0/1:32,37:69:99:833,0,635
6    26864989    rs9286717    T    C    491.38    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.55;MQ0=6;QD=18.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    1/1:0,27:27:45.10:524,45,0
6    26865215    rs9295713    T    C    638.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.46;MQ0=0;QD=22.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    1/1:0,28:28:60.14:672,60,0
6    26865758    rs13217660    T    C    653.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=31.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:686,54,0
6    26865770    rs13201491    C    A    709.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.7;MQ0=0;QD=32.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:743,57,0
6    26865972    rs145943237    G    T    67.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.37;MQ0=18;QD=3.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    1/1:9,13:22:9.02:99,9,0
6    26866367    rs13202503    G    A    203.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.49;MQ0=23;QD=6.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    1/1:12,20:32:21.04:236,21,0
6    26866905    rs10946864    G    C    337.14    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.475;DB;DP=56;Dels=0.0;FS=14.075;HRun=3;HaplotypeScore=0.9332;MQ=46.54;MQ0=1;MQRankSum=2.289;QD=6.02;ReadPosRankSum=-0.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    0/1:39,17:56:99:367,0,1006
6    26867071    rs12180920    T    C    679.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=26.34;MQ0=21;QD=11.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    1/1:6,54:60:63.15:713,63,0
6    26867722    rs150533938    C    G    54.15    MQFilter40;QDFilter2    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=13.55;MQ0=55;MQRankSum=-0.867;QD=0.72;ReadPosRankSum=2.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    0/1:37,38:75:84.14:84,0,149
6    26867958    rs143920545    CT    C    893.44    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=4.437;DB;DP=51;FS=6.133;HRun=1;HaplotypeScore=238.2838;IndelType=D;MQ=49.0;MQ0=0;MQRankSum=-1.563;QD=17.18;ReadPosRankSum=0.748;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    0/1:24,28:51:99:932,0,988
6    26868013    rs12198305    C    G    406.81    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=33;Dels=0.0;FS=10.705;HRun=2;HaplotypeScore=3.7995;MQ=49.98;MQ0=0;MQRankSum=-1.767;QD=12.33;ReadPosRankSum=-2.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    0/1:16,17:33:99:437,0,353
6    26868036    rs12198406    G    T    30.87    QDFilter2    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.713;DB;DP=23;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=7.0974;MQ=48.36;MQ0=0;MQRankSum=-1.83;QD=1.34;ReadPosRankSum=-0.651;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL133255.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442958    GT:AD:DP:GQ:PL    0/1:13,10:23:60.86:61,0,377
6    26892880    rs12525227    T    C    1050.08    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=134;Dels=0.0;FS=35.182;HRun=0;HaplotypeScore=2.6915;MQ=42.57;MQ0=10;MQRankSum=-9.607;QD=7.84;ReadPosRankSum=0.962;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383335    GT:AD:DP:GQ:PL    0/1:62,72:134:99:1080,0,1926
6    26893051    rs9393771    C    T    754.42    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=3.274;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9923;MQ=45.57;MQ0=0;MQRankSum=3.649;QD=11.43;ReadPosRankSum=-0.475;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383335    GT:AD:DP:GQ:PL    0/1:40,26:66:99:784,0,1006
6    27114425    .    G    A    241.51    MQFilter40;QDFilter2    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.866;DP=205;Dels=0.0;FS=3.0;HRun=0;HaplotypeScore=3.9872;MQ=36.88;MQ0=21;MQRankSum=-5.978;QD=1.18;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=P51;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_27114197_27114577;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2BK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356950    GT:AD:DP:GQ:PL    0/1:151,54:205:99:272,0,3588
6    27216848    rs1234145    T    C    968.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=7.978;MQ=48.01;MQ0=0;QD=19.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230582    GT:AD:DP:GQ:PL    1/1:0,48:49:87.21:1001,87,0
6    27276690    rs7770955    G    T    406.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377451    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:439,33,0
6    27277402    rs6456773    C    T    841.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=G786S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_27276842_27278683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377451    GT:AD:DP:GQ:PL    1/1:1,25:26:66.19:874,66,0
6    27279852    rs2235233    T    C    315.03    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=30;Dels=0.0;FS=1.536;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.561;QD=10.5;ReadPosRankSum=-0.229;SNPEFF_AMINO_ACID_CHANGE=Q33R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_27278876_27279949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377451    GT:AD:DP:GQ:PL    0/1:16,14:30:99:345,0,487
6    27368031    rs766092    T    C    994.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF391;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477999    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:1028,75,0
6    27424443    rs764461    T    A    268.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF184;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211936    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:302,24,0
6    27424960    rs10484398    G    C    1122.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF184;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211936    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1155,84,0
6    27425185    rs1883216    C    A    1441.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_AMINO_ACID_CHANGE=A27S;SNPEFF_CODON_CHANGE=Gcg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_27425062_27425188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF184;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000211936    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1475,108,0
6    27435707    rs2272814    G    A    716.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF184;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211936    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:750,60,0
6    27440004    rs7750795    A    C    851.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF184;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211936    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:885,66,0
6    27792221    rs200499    C    T    1081.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=46.93;MQ0=4;QD=26.39;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355057    GT:AD:DP:GQ:PL    1/1:2,39:41:93.28:1115,93,0
6    27792228    rs200498    T    C    1227.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.23;MQ0=3;QD=30.69;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H4J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355057    GT:AD:DP:GQ:PL    1/1:1,39:40:93.31:1260,93,0
6    27832979    .    T    A    158.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=22.67;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331442    GT:AD:DP:GQ:PL    0/1:2,5:7:60.01:189,0,60
6    27833313    .    G    C    1048.76    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.395;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6937;MQ=58.88;MQ0=0;MQRankSum=1.035;QD=16.92;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=A61P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_27833034_27833606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIST1H2AL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357320    GT:AD:DP:GQ:PL    0/1:28,33:62:99:1079,0,862
6    28053097    rs2295594    G    A    395.73    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.264;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.369;QD=23.28;ReadPosRankSum=-1.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377325    GT:AD:DP:GQ:PL    0/1:5,12:17:99:426,0,149
6    28054198    rs17767294    A    G    67.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.45;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377325    GT:AD:DP:GQ:PL    0/1:6,3:9:97.02:97,0,220
6    28094731    rs2275508    T    C    362.17    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.746;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=-0.028;QD=13.41;ReadPosRankSum=-1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340487    GT:AD:DP:GQ:PL    0/1:11,16:27:99:392,0,299
6    28117443    rs2622322    C    G    520.88    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.282;DB;DP=28;Dels=0.0;FS=2.965;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.8;QD=18.6;ReadPosRankSum=-1.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF192;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330236    GT:AD:DP:GQ:PL    0/1:11,17:28:99:551,0,380
6    28120663    rs9295758    C    G    94.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.036;QD=8.56;ReadPosRankSum=2.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF192;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330236    GT:AD:DP:GQ:PL    0/1:6,5:11:99:124,0,223
6    28120898    rs17774663    G    A    700    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.456;DB;DP=50;Dels=0.0;FS=6.493;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.612;QD=14.0;ReadPosRankSum=0.495;SNPEFF_AMINO_ACID_CHANGE=Q280;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28120834_28124089;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF192;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330236    GT:AD:DP:GQ:PL    0/1:26,24:50:99:730,0,821
6    28121278    rs62620226    A    G    1460.93    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.347;DB;DP=111;Dels=0.0;FS=0.945;HRun=1;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;MQRankSum=1.03;QD=13.16;ReadPosRankSum=-0.969;SNPEFF_AMINO_ACID_CHANGE=Q407R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28120834_28124089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF192;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330236    GT:AD:DP:GQ:PL    0/1:60,51:111:99:1491,0,2076
6    28194799    rs41269285    T    C    188.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.739;QD=13.47;ReadPosRankSum=0.965;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF193;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526391    GT:AD:DP:GQ:PL    0/1:6,8:14:99:219,0,209
6    28212748    rs13408    G    A    145.79    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=12.15;ReadPosRankSum=1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZKSCAN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356796    GT:AD:DP:GQ:PL    0/1:5,7:12:99:176,0,138
6    28219826    rs1736895    G    A    212.31    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5226;MQ=57.66;MQ0=0;MQRankSum=1.519;QD=10.62;ReadPosRankSum=0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZKSCAN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423974    GT:AD:DP:GQ:PL    0/1:11,9:20:99:242,0,352
6    28226903    rs72850300    C    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZKSCAN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423974    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    28227145    rs41269289    G    C    171.04    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.01;DB;DP=25;Dels=0.0;FS=1.734;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.481;QD=6.84;ReadPosRankSum=-0.142;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZKSCAN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423974    GT:AD:DP:GQ:PL    0/1:16,9:25:99:201,0,483
6    28228342    rs1679709    A    G    1163.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=E398G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28227098_28228736;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343684    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1196,90,0
6    28251539    rs41269291    A    G    839.46    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=64;Dels=0.0;FS=2.548;HRun=0;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=-0.806;QD=13.12;ReadPosRankSum=-0.685;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405948    GT:AD:DP:GQ:PL    0/1:33,31:64:99:869,0,1000
6    28294550    rs853684    T    C    1059.43    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.003;DB;DP=52;Dels=0.0;FS=6.548;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=2.346;QD=20.37;ReadPosRankSum=-1.168;SNPEFF_AMINO_ACID_CHANGE=K205R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28292724_28294631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF323;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344279    GT:AD:DP:GQ:PL    0/1:16,36:52:99:1089,0,485
6    28327371    rs733743    G    C    1039.68    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DB;DP=73;Dels=0.0;FS=2.497;HRun=0;HaplotypeScore=0.734;MQ=59.49;MQ0=0;MQRankSum=2.389;QD=14.24;ReadPosRankSum=-0.645;SNPEFF_AMINO_ACID_CHANGE=R3T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28327302_28327765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZKSCAN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252211    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1070,0,1181
6    28359170    rs2859348    A    G    855.51    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=3.571;DB;DP=62;Dels=0.0;FS=2.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.486;QD=13.8;ReadPosRankSum=0.092;SNPEFF_AMINO_ACID_CHANGE=D299;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28358373_28359519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361028    GT:AD:DP:GQ:PL    0/1:32,30:62:99:886,0,988
6    28359186    rs2232430    C    T    877.26    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.245;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.36;QD=15.39;ReadPosRankSum=0.184;SNPEFF_AMINO_ACID_CHANGE=R294K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28358373_28359519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361028    GT:AD:DP:GQ:PL    0/1:27,30:57:99:907,0,848
6    28403440    rs41270589    G    A    603.35    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.728;DB;DP=46;Dels=0.0;FS=1.37;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=1.257;QD=13.12;ReadPosRankSum=-0.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZSCAN23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289788    GT:AD:DP:GQ:PL    0/1:25,21:46:99:633,0,807
6    28474218    rs974334    C    G    1059.97    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.662;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.63;MQ0=0;MQRankSum=-1.775;QD=17.1;ReadPosRankSum=0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399282    GT:AD:DP:GQ:PL    0/1:28,34:62:99:1090,0,878
6    28478555    rs35062161    A    T    464.05    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=48;Dels=0.0;FS=11.798;HRun=1;HaplotypeScore=0.5784;MQ=59.52;MQ0=0;MQRankSum=1.026;QD=9.67;ReadPosRankSum=1.28;SNPEFF_AMINO_ACID_CHANGE=Y71N;SNPEFF_CODON_CHANGE=Tat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28478550_28478692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399282    GT:AD:DP:GQ:PL    0/1:31,17:48:99:494,0,936
6    28483292    rs34273434    G    C    35.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.9;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361902    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:66,0,68
6    28483482    rs406113    A    C    1415.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.334;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=1.82;QD=27.75;ReadPosRankSum=-0.315;SNPEFF_AMINO_ACID_CHANGE=F13L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28483434_28483570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361902    GT:AD:DP:GQ:PL    1/1:2,49:51:72.60:1448,73,0
6    28493585    rs28382590    A    G    162.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=13.58;ReadPosRankSum=-1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399282    GT:AD:DP:GQ:PL    0/1:6,6:12:99:193,0,204
6    28499567    rs58554303    T    C    2977.71    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=222;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5661;MQ=59.79;MQ0=0;MQRankSum=0.164;QD=13.41;ReadPosRankSum=-0.79;SNPEFF_AMINO_ACID_CHANGE=L85P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28499555_28499672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412168    GT:AD:DP:GQ:PL    0/1:106,116:222:99:3008,0,3365
6    28501714    rs114917314    C    T    1222.72    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.669;DB;DP=90;Dels=0.0;FS=3.054;HRun=3;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-1.358;QD=13.59;ReadPosRankSum=2.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412168    GT:AD:DP:GQ:PL    0/1:44,46:90:99:1253,0,1293
6    28503357    rs413488    A    G    575.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412168    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:609,51,0
6    28503705    rs72850077    G    A    1241.14    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.722;DB;DP=72;Dels=0.0;FS=2.633;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=17.24;ReadPosRankSum=-0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412168    GT:AD:DP:GQ:PL    0/1:29,43:72:99:1271,0,934
6    28542424    rs450630    G    A    2612.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=D686;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28542421_28543913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAND3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452236    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2645,199,0
6    28542520    rs370520    C    T    2933.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=K654;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28542421_28543913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAND3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452236    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2967,226,0
6    28543089    rs41270593    G    T    797.97    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=54;Dels=0.0;FS=2.466;HRun=1;HaplotypeScore=1.5774;MQ=59.57;MQ0=0;MQRankSum=-0.348;QD=14.78;ReadPosRankSum=-1.227;SNPEFF_AMINO_ACID_CHANGE=Q465K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28542421_28543913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAND3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452236    GT:AD:DP:GQ:PL    0/1:26,28:54:99:828,0,815
6    28546875    rs116504157    C    A    415.55    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=18.89;ReadPosRankSum=-0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452236    GT:AD:DP:GQ:PL    0/1:9,13:22:99:446,0,311
6    28546979    rs116248176    A    C    1471.40    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=1.875;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.582;QD=17.11;ReadPosRankSum=-1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452236    GT:AD:DP:GQ:PL    0/1:37,49:86:99:1501,0,1138
6    28547283    rs41270596    T    C    199.48    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.458;QD=9.5;ReadPosRankSum=-0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452236    GT:AD:DP:GQ:PL    0/1:11,10:21:99:229,0,401
6    28751727    rs1233627    T    C    212.55    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.28;MQ0=0;MQRankSum=-3.204;QD=10.12;ReadPosRankSum=0.176;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL662890.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440030    GT:AD:DP:GQ:PL    0/1:11,10:21:99:243,0,326
6    28875502    rs114824107    C    T    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498117    GT:AD:DP:GQ:PL    0/1:1,2:3:34.29:67,0,34
6    28876965    .    AC    A    332.40    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DP=19;FS=0.0;HRun=2;HaplotypeScore=59.6146;IndelType=D;MQ=58.78;MQ0=0;MQRankSum=0.454;QD=17.49;ReadPosRankSum=0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498117    GT:AD:DP:GQ:PL    0/1:8,11:19:99:371,0,303
6    28911585    rs72860099    C    G    189.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.005;DB;DP=15;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.53;QD=12.61;ReadPosRankSum=-0.177;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377186    GT:AD:DP:GQ:PL    0/1:6,9:15:99:219,0,212
6    28911802    rs2071790    G    A    335.57    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.458;DB;DP=42;Dels=0.0;FS=1.336;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.419;QD=7.99;ReadPosRankSum=-0.14;SNPEFF_AMINO_ACID_CHANGE=G41E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28911654_28911803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf100;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377186    GT:AD:DP:GQ:PL    0/1:26,16:42:99:366,0,856
6    28962604    rs116465210    A    T    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=15.61;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF311;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483450    GT:AD:DP:GQ:PL    0/1:2,3:5:59.62:108,0,60
6    28963248    rs6456880    T    G    541.18    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.917;DB;DP=34;Dels=0.0;FS=1.363;HRun=0;HaplotypeScore=1.7333;MQ=59.32;MQ0=0;MQRankSum=-0.318;QD=15.92;ReadPosRankSum=-1.179;SNPEFF_AMINO_ACID_CHANGE=K419Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28962565_28964363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF311;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535083    GT:AD:DP:GQ:PL    0/1:12,22:34:99:571,0,335
6    28964086    rs61751894    G    A    1555.65    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=98;Dels=0.0;FS=12.942;HRun=1;HaplotypeScore=3.8009;MQ=59.29;MQ0=0;MQRankSum=0.04;QD=15.87;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=N139;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_28962565_28964363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF311;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535083    GT:AD:DP:GQ:PL    0/1:47,51:98:99:1586,0,1572
6    29011927    rs2050230    A    G    67.27    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=15;Dels=0.0;FS=5.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=4.48;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377175    GT:AD:DP:GQ:PL    0/1:11,4:15:97.26:97,0,409
6    29011960    rs9391651    T    C    163.46    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.058;DB;DP=22;Dels=0.0;FS=2.046;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.034;QD=7.43;ReadPosRankSum=0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2W1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377175    GT:AD:DP:GQ:PL    0/1:14,8:22:99:193,0,488
6    29068622    rs6905729    T    A    407.95    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=16.32;ReadPosRankSum=-0.19;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_29068386_29069658;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377171    GT:AD:DP:GQ:PL    0/1:12,13:25:99:438,0,421
6    29068759    rs114428455    C    A    6091.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.4423;MQ=59.6;MQ0=0;QD=35.63;SNPEFF_AMINO_ACID_CHANGE=L14I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29068386_29069658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377171    GT:AD:DP:GQ:PL    1/1:0,171:171:99:6092,457,0
6    29069016    rs3131088    G    A    2295.75    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=4.508;DB;DP=129;Dels=0.0;FS=0.664;HRun=0;HaplotypeScore=2.3838;MQ=60.0;MQ0=0;MQRankSum=-1.757;QD=17.8;ReadPosRankSum=1.363;SNPEFF_AMINO_ACID_CHANGE=T99;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29068386_29069658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377171    GT:AD:DP:GQ:PL    0/1:57,72:129:99:2326,0,1665
6    29069264    rs2394516    T    C    2182.26    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.068;DB;DP=179;Dels=0.0;FS=0.571;HRun=0;HaplotypeScore=2.8066;MQ=59.9;MQ0=0;MQRankSum=0.9;QD=12.19;ReadPosRankSum=-0.22;SNPEFF_AMINO_ACID_CHANGE=V182A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29068386_29069658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377171    GT:AD:DP:GQ:PL    0/1:103,76:179:99:2212,0,3182
6    29069299    rs114062043    C    T    1756.36    PASS    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.12;DB;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.972;QD=11.19;ReadPosRankSum=0.383;SNPEFF_AMINO_ACID_CHANGE=Q194*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_6_29068386_29069658;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000377171    GT:AD:DP:GQ:PL    0/1:94,63:157:99:1786,0,3104
6    29069337    rs116447641    A    T    5388.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=I206;SNPEFF_CODON_CHANGE=atA/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29068386_29069658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377171    GT:AD:DP:GQ:PL    1/1:0,153:153:99:5389,415,0
6    29080004    rs28757581    A    G    2269.78    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.683;DB;DP=155;Dels=0.0;FS=1.437;HRun=0;HaplotypeScore=5.1173;MQ=54.43;MQ0=0;MQRankSum=-1.889;QD=14.64;ReadPosRankSum=0.725;SNPEFF_AMINO_ACID_CHANGE=T113A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29079668_29080603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377169    GT:AD:DP:GQ:PL    0/1:75,80:155:99:2300,0,2245
6    29080344    rs3749977    G    A    1193.39    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.346;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=-0.224;QD=12.05;ReadPosRankSum=0.955;SNPEFF_AMINO_ACID_CHANGE=R226Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29079668_29080603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377169    GT:AD:DP:GQ:PL    0/1:58,41:99:99:1223,0,1815
6    29080349    rs3130764    A    G    3622.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5983;MQ=59.81;MQ0=0;QD=36.97;SNPEFF_AMINO_ACID_CHANGE=I228V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29079668_29080603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377169    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3623,265,0
6    29080450    rs114315692    G    A    3146.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6377;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_AMINO_ACID_CHANGE=M261I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29079668_29080603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377169    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3180,235,0
6    29141632    rs3116855    T    C    1820.30    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.997;DB;DP=136;Dels=0.0;FS=4.117;HRun=1;HaplotypeScore=1.7987;MQ=59.63;MQ0=0;MQRankSum=-1.16;QD=13.38;ReadPosRankSum=-0.707;SNPEFF_AMINO_ACID_CHANGE=Y74H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29141311_29142351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377167    GT:AD:DP:GQ:PL    0/1:70,66:136:99:1850,0,2199
6    29141743    rs113110715    A    G    5196.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=3.4922;MQ=59.56;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=T111A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29141311_29142351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377167    GT:AD:DP:GQ:PL    1/1:0,158:158:99:5197,412,0
6    29141772    rs3129158    A    G    5778.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=59.33;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=S120;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29141311_29142351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377167    GT:AD:DP:GQ:PL    1/1:0,174:174:99:5778,454,0
6    29141849    rs3116856    T    C    2827.14    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=3.004;DB;DP=195;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3486;MQ=59.79;MQ0=0;MQRankSum=0.464;QD=14.5;ReadPosRankSum=1.234;SNPEFF_AMINO_ACID_CHANGE=V146A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29141311_29142351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377167    GT:AD:DP:GQ:PL    0/1:98,97:195:99:2857,0,3043
6    29142054    rs115334439    C    G    1624.22    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.262;DB;DP=112;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=3.1657;MQ=59.63;MQ0=0;MQRankSum=-0.323;QD=14.5;ReadPosRankSum=-0.335;SNPEFF_AMINO_ACID_CHANGE=L214;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29141311_29142351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377167    GT:AD:DP:GQ:PL    0/1:58,53:112:99:1654,0,1891
6    29142064    rs3130743    A    G    1560.55    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=4.258;DB;DP=105;Dels=0.0;FS=1.62;HRun=0;HaplotypeScore=5.1789;MQ=59.6;MQ0=0;MQRankSum=-1.006;QD=14.86;ReadPosRankSum=-0.643;SNPEFF_AMINO_ACID_CHANGE=T218A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29141311_29142351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377167    GT:AD:DP:GQ:PL    0/1:52,51:105:99:1591,0,1585
6    29142476    rs2206042    C    A    121.47    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.29;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2J2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377167    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:151,0,28
6    29230577    rs116351412    C    A    830.29    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.712;DB;DP=66;Dels=0.0;FS=4.92;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.112;QD=12.58;ReadPosRankSum=-0.739;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR2U1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377164    GT:AD:DP:GQ:PL    0/1:39,27:66:99:860,0,1169
6    29230683    rs3130827    T    C    1069.51    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=62;Dels=0.0;FS=2.228;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.023;QD=17.25;ReadPosRankSum=-1.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR2U1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377164    GT:AD:DP:GQ:PL    0/1:23,38:62:99:1100,0,682
6    29231172    rs9257657    G    A    117.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=23.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR2U1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377164    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:150,12,0
6    29236645    rs116543430    G    T    71.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.21;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=XXbac-BPG308J9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441381    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,149
6    29274348    rs9257693    G    A    321.63    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.099;QD=14.62;ReadPosRankSum=1.022;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377160    GT:AD:DP:GQ:PL    0/1:12,10:22:99:352,0,421
6    29274356    rs7774255    T    A    389.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.569;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.837;QD=16.25;ReadPosRankSum=0.144;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377160    GT:AD:DP:GQ:PL    0/1:12,12:24:99:420,0,435
6    29274486    rs9257694    T    C    1112.66    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.939;DB;DP=79;Dels=0.0;FS=0.845;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.506;QD=14.08;ReadPosRankSum=-0.132;SNPEFF_AMINO_ACID_CHANGE=M7T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29274403_29275519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377160    GT:AD:DP:GQ:PL    0/1:41,38:79:99:1143,0,1154
6    29275507    rs9257696    T    C    325.49    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.187;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=13.56;ReadPosRankSum=1.101;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR14J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377160    GT:AD:DP:GQ:PL    0/1:11,13:24:99:355,0,352
6    29322866    rs9357080    A    G    78.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377151    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:109,0,30
6    29323259    rs115450889    G    A    2175.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=35.08;SNPEFF_AMINO_ACID_CHANGE=F238;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29323007_29324054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5V1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377151    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2208,169,0
6    29342825    rs115388145    G    A    893.63    PASS    AB=0.317;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=41;Dels=0.0;FS=2.807;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.518;QD=21.8;ReadPosRankSum=-1.639;SNPEFF_AMINO_ACID_CHANGE=L80;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29341200_29343068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377143    GT:AD:DP:GQ:PL    0/1:13,28:41:99:924,0,367
6    29364325    rs115822770    A    G    523.29    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.485;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.08;QD=19.38;ReadPosRankSum=-1.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377143    GT:AD:DP:GQ:PL    0/1:10,17:27:99:553,0,340
6    29364615    rs9257834    G    T    1591.11    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=91;Dels=0.0;FS=1.965;HRun=2;HaplotypeScore=3.6609;MQ=59.54;MQ0=0;MQRankSum=0.427;QD=17.48;ReadPosRankSum=-1.107;SNPEFF_AMINO_ACID_CHANGE=V47F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29364416_29365448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383555    GT:AD:DP:GQ:PL    0/1:38,52:91:99:1621,0,1256
6    29364643    rs4987411    T    C    1385.39    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=82;Dels=0.0;FS=3.174;HRun=3;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.778;QD=16.89;ReadPosRankSum=0.141;SNPEFF_AMINO_ACID_CHANGE=L56P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29364416_29365448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383555    GT:AD:DP:GQ:PL    0/1:35,47:82:99:1415,0,1157
6    29364787    rs3128853    C    T    2957.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=S104F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29364416_29365448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383555    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2990,238,0
6    29364815    rs2073154    C    G    1497.72    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=0.353;DB;DP=87;Dels=0.0;FS=3.023;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=17.22;ReadPosRankSum=2.64;SNPEFF_AMINO_ACID_CHANGE=F113L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29364416_29365448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383555    GT:AD:DP:GQ:PL    0/1:37,50:87:99:1528,0,1005
6    29364835    rs2073153    T    G    1287.71    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.585;DB;DP=90;Dels=0.0;FS=2.97;HRun=0;HaplotypeScore=2.6203;MQ=59.79;MQ0=0;MQRankSum=1.627;QD=14.31;ReadPosRankSum=1.292;SNPEFF_AMINO_ACID_CHANGE=L120R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29364416_29365448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383555    GT:AD:DP:GQ:PL    0/1:40,50:90:99:1318,0,1093
6    29364951    rs2073151    G    A    1385.38    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.116;DB;DP=84;Dels=0.0;FS=7.496;HRun=0;HaplotypeScore=0.9894;MQ=59.73;MQ0=0;MQRankSum=-1.49;QD=16.49;ReadPosRankSum=0.855;SNPEFF_AMINO_ACID_CHANGE=V159I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29364416_29365448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383555    GT:AD:DP:GQ:PL    0/1:37,47:84:99:1415,0,1063
6    29365241    rs2073150    T    C    1687.30    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=138;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=2.399;MQ=59.67;MQ0=0;MQRankSum=1.04;QD=12.23;ReadPosRankSum=0.201;SNPEFF_AMINO_ACID_CHANGE=L255;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29364416_29365448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383555    GT:AD:DP:GQ:PL    0/1:75,63:138:99:1717,0,2296
6    29365423    rs2073149    A    T    584.84    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.427;DB;DP=30;Dels=0.0;FS=3.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.046;QD=19.49;ReadPosRankSum=1.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377143    GT:AD:DP:GQ:PL    0/1:13,17:30:99:615,0,433
6    29385237    rs3131024    T    C    2377.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7356;MQ=58.08;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377143    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2411,190,0
6    29385772    rs114084916    G    C    4242.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0111;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377143    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4242,307,0
6    29394427    rs115625066    G    A    132.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=12.05;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR12D3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377143    GT:AD:DP:GQ:PL    0/1:6,5:11:99:163,0,191
6    29394926    rs9257857    C    T    413.95    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.613;DB;DP=38;Dels=0.0;FS=1.239;HRun=0;HaplotypeScore=0.5784;MQ=59.51;MQ0=0;MQRankSum=0.528;QD=10.89;ReadPosRankSum=-0.675;SNPEFF_AMINO_ACID_CHANGE=A165T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29393281_29395509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377147    GT:AD:DP:GQ:PL    0/1:21,17:38:99:444,0,668
6    29407970    rs115316507    T    C    393.48    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.664;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=1.172;QD=6.78;ReadPosRankSum=-1.27;SNPEFF_AMINO_ACID_CHANGE=F60L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29407083_29408731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444197    GT:AD:DP:GQ:PL    0/1:36,22:58:99:423,0,1185
6    29408313    rs2074466    C    A    1374.75    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.159;DB;DP=107;Dels=0.0;FS=3.947;HRun=0;HaplotypeScore=1.6006;MQ=59.78;MQ0=0;MQRankSum=1.159;QD=12.85;ReadPosRankSum=-0.205;SNPEFF_AMINO_ACID_CHANGE=P174Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29407083_29408731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444197    GT:AD:DP:GQ:PL    0/1:62,45:107:99:1405,0,1889
6    29408528    rs2074464    A    G    6176.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.63;DB;DP=195;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3698;MQ=59.55;MQ0=0;MQRankSum=1.877;QD=31.67;ReadPosRankSum=-0.999;SNPEFF_AMINO_ACID_CHANGE=M246V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29407083_29408731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444197    GT:AD:DP:GQ:PL    1/1:2,192:195:99:6176,419,0
6    29429392    rs116391924    G    A    62.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.684;QD=6.93;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484371    GT:AD:DP:GQ:PL    0/1:6,3:9:92.36:92,0,152
6    29523646    rs444013    G    C    1452.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7621;MQ=60.0;MQ0=0;MQRankSum=-1.04;QD=36.32;ReadPosRankSum=0.52;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355973    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1486,114,0
6    29523676    rs8337    C    G    1801.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_AMINO_ACID_CHANGE=C160S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29523292_29524127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377050    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1835,138,0
6    29523797    rs17184290    C    T    973.34    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=1.046;QD=16.5;ReadPosRankSum=1.58;SNPEFF_AMINO_ACID_CHANGE=E120K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29523292_29524127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377050    GT:AD:DP:GQ:PL    0/1:26,33:59:99:1003,0,812
6    29523952    rs2076485    A    G    606.54    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=39;Dels=0.0;FS=2.835;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=15.55;ReadPosRankSum=-1.005;SNPEFF_AMINO_ACID_CHANGE=I68T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29523292_29524127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377050    GT:AD:DP:GQ:PL    0/1:17,22:39:99:637,0,565
6    29524168    rs115849965    G    T    125.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.45;QD=12.53;ReadPosRankSum=1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355973    GT:AD:DP:GQ:PL    0/1:5,5:10:99:155,0,170
6    29542445    rs1233398    C    T    460.50    MQFilter40    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=26.7;MQ0=22;MQRankSum=1.171;QD=8.22;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355973    GT:AD:DP:GQ:PL    0/1:34,22:56:99:490,0,365
6    29555585    rs17184367    A    G    52.59    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=4.78;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355973    GT:AD:DP:GQ:PL    0/1:8,3:11:82.59:83,0,282
6    29555681    rs3095275    A    G    1135.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.83;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355973    GT:AD:DP:GQ:PL    1/1:0,34:34:96.29:1169,96,0
6    29555778    rs2235698    A    G    1198.68    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.64;DB;DP=90;Dels=0.0;FS=1.745;HRun=3;HaplotypeScore=0.8667;MQ=56.44;MQ0=0;MQRankSum=-0.021;QD=13.32;ReadPosRankSum=-0.686;SNPEFF_AMINO_ACID_CHANGE=P19;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29555683_29556745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2H2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383640    GT:AD:DP:GQ:PL    0/1:43,47:90:99:1229,0,1226
6    29555809    rs3129034    C    T    2922.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=56.88;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=L30F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29555683_29556745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383640    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2956,229,0
6    29555864    rs1233387    C    T    847.56    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=72;Dels=0.0;FS=0.939;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=0.751;QD=11.77;ReadPosRankSum=0.56;SNPEFF_AMINO_ACID_CHANGE=A48V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29555683_29556745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383640    GT:AD:DP:GQ:PL    0/1:43,29:72:99:878,0,1187
6    29571609    rs10946999    G    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473774    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
6    29589124    rs29221    C    G    388.84    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.339;QD=16.91;ReadPosRankSum=-0.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477029    GT:AD:DP:GQ:PL    0/1:11,12:23:99:419,0,381
6    29589666    rs29220    C    G    351.47    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.19;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=14.06;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355973    GT:AD:DP:GQ:PL    0/1:13,12:25:99:381,0,446
6    29604124    rs1233378    G    A    782.73    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=56;Dels=0.0;FS=1.159;HRun=1;HaplotypeScore=0.9832;MQ=52.02;MQ0=0;MQRankSum=1.141;QD=13.98;ReadPosRankSum=0.769;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376977    GT:AD:DP:GQ:PL    0/1:31,25:56:99:813,0,876
6    29625001    rs3130250    A    G    649.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=58.78;MQ0=0;QD=34.16;SNPEFF_AMINO_ACID_CHANGE=S5;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29624780_29625074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376888    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:682,51,0
6    29634003    rs2857766    G    C    1259.50    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=0.116;DB;DP=83;Dels=0.0;FS=0.87;HRun=0;HaplotypeScore=4.8068;MQ=60.0;MQ0=0;MQRankSum=-1.053;QD=15.17;ReadPosRankSum=0.84;SNPEFF_AMINO_ACID_CHANGE=V171L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29633929_29634042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376891    GT:AD:DP:GQ:PL    0/1:43,40:83:99:1289,0,1227
6    29634012    rs3130253    A    G    2723.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8736;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_AMINO_ACID_CHANGE=I174V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29633929_29634042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376891    GT:AD:DP:GQ:PL    1/1:0,78:79:99:2756,208,0
6    29635508    rs1318631    G    A    608.83    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.088;QD=14.5;ReadPosRankSum=-2.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376903    GT:AD:DP:GQ:PL    0/1:20,22:42:99:639,0,680
6    29640951    rs61730327    T    C    1557.49    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6281;MQ=59.34;MQ0=0;MQRankSum=1.115;QD=15.89;ReadPosRankSum=-1.957;SNPEFF_AMINO_ACID_CHANGE=R293G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29640169_29641535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376881    GT:AD:DP:GQ:PL    0/1:44,54:98:99:1587,0,1360
6    29641637    rs3095290    G    A    386.78    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.308;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.954;QD=16.82;ReadPosRankSum=0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376888    GT:AD:DP:GQ:PL    0/1:11,12:23:99:417,0,392
6    29644502    rs375984    C    T    148.65    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.78;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376888    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:179,0,21
6    29644633    rs376319    C    T    521.06    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DB;DP=36;Dels=0.0;FS=2.181;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.711;QD=14.47;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376888    GT:AD:DP:GQ:PL    0/1:17,19:36:99:551,0,564
6    29691019    rs1362126    G    A    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376861    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    29691090    rs1362125    T    A    53.45    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=4.11;ReadPosRankSum=0.254;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259951    GT:AD:DP:GQ:PL    0/1:10,3:13:83.44:83,0,379
6    29691390    rs1632955    C    G    154.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=4.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259951    GT:AD:DP:GQ:PL    1/1:0,33:33:20.98:187,21,0
6    29691391    rs79389550    T    C    200.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=5.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259951    GT:AD:DP:GQ:PL    1/1:0,34:34:26.97:234,27,0
6    29691582    rs17875380    C    A    98.65    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=13;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.9916;MQ=56.35;MQ0=0;MQRankSum=0.536;QD=7.59;ReadPosRankSum=1.835;SNPEFF_AMINO_ACID_CHANGE=P48Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29691580_29691704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449921    GT:AD:DP:GQ:PL    0/1:9,4:13:99:129,0,210
6    29691857    rs2072895    C    G    90.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=11.27;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259951    GT:AD:DP:GQ:PL    0/1:4,4:8:99:120,0,137
6    29692305    rs1632953    A    G    280.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414333    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:314,24,0
6    29692634    rs112851510    T    G    70.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414333    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
6    29693011    rs1736924    C    T    1448.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=36.22;SNPEFF_AMINO_ACID_CHANGE=P154S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29692808_29693083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440587    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1482,111,0
6    29693969    rs1736922    C    T    834.41    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.509;QD=9.48;ReadPosRankSum=-0.909;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414333    GT:AD:DP:GQ:PL    0/1:54,34:88:99:864,0,1522
6    29694336    rs9280679    ATGTG    A    347.58    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=137.1797;IndelType=D;MQ=55.8;MQ0=0;MQRankSum=0.53;QD=17.38;ReadPosRankSum=-0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334668    GT:AD:DP:GQ:PL    0/1:6,8:20:99:387,0,271
6    29694427    rs1059174    C    T    1397.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334668    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1431,105,0
6    29695502    rs1628578    A    C    84.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
6    29695698    rs35737667    CT    C    651.20    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.718;DB;DP=57;FS=12.99;HRun=3;HaplotypeScore=272.0544;IndelType=D;MQ=58.97;MQ0=0;MQRankSum=1.135;QD=11.42;ReadPosRankSum=0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259951    GT:AD:DP:GQ:PL    0/1:33,24:57:99:690,0,1205
6    29695713    rs2523404    C    T    1002.12    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=4.354;DB;DP=65;Dels=0.0;FS=10.819;HRun=0;HaplotypeScore=1.782;MQ=59.1;MQ0=0;MQRankSum=0.519;QD=15.42;ReadPosRankSum=0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259951    GT:AD:DP:GQ:PL    0/1:31,34:65:99:1032,0,793
6    29695854    rs2735059    G    A    429.36    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.307;DB;DP=23;Dels=0.0;FS=1.824;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.236;QD=18.67;ReadPosRankSum=-0.501;SNPEFF_AMINO_ACID_CHANGE=E341K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29695734_29697106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399258    GT:AD:DP:GQ:PL    0/1:7,16:23:99:459,0,201
6    29706277    rs2844831    T    C    74.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.75;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440587    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:105,0,29
6    29706793    rs114900823    A    T    279.72    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.003;QD=21.52;ReadPosRankSum=0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440587    GT:AD:DP:GQ:PL    0/1:4,9:13:99:310,0,99
6    29713273    rs1633090    G    T    660.31    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=60;Dels=0.0;FS=3.723;HRun=0;HaplotypeScore=0.8667;MQ=58.91;MQ0=0;MQRankSum=0.175;QD=11.01;ReadPosRankSum=1.118;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-F-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399247    GT:AD:DP:GQ:PL    0/1:32,28:60:99:690,0,875
6    29713370    rs114840576    G    A    1286.58    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=4.324;DB;DP=87;Dels=0.0;FS=0.886;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.631;QD=14.79;ReadPosRankSum=-0.037;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-F-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399247    GT:AD:DP:GQ:PL    0/1:39,48:87:99:1317,0,1041
6    29713465    rs1633089    T    C    1392.20    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.964;DB;DP=134;Dels=0.0;FS=8.219;HRun=2;HaplotypeScore=1.7356;MQ=59.83;MQ0=0;MQRankSum=-0.765;QD=10.39;ReadPosRankSum=0.206;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-F-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399247    GT:AD:DP:GQ:PL    0/1:75,59:134:99:1422,0,2202
6    29713580    rs1633088    T    C    516.92    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.367;DB;DP=58;Dels=0.0;FS=11.426;HRun=1;HaplotypeScore=1.79;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=8.91;ReadPosRankSum=0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=IFITM4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441380    GT:AD:DP:GQ:PL    0/1:35,23:58:99:547,0,1187
6    29713768    rs1737087    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=IFITM4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441380    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    29716931    rs116375469    G    C    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG9P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435408    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
6    29761470    rs3115632    T    C    174.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399243    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
6    29784637    rs145676791    A    G    390.10    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.024;DB;DP=53;Dels=0.0;FS=1.284;HRun=0;HaplotypeScore=0.8667;MQ=49.05;MQ0=4;MQRankSum=-5.723;QD=7.36;ReadPosRankSum=2.44;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MICG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416822    GT:AD:DP:GQ:PL    0/1:30,23:53:99:420,0,1047
6    29784693    rs116426608    C    T    1245.39    PASS    AB=0.19;AC=1;AF=0.50;AN=2;BaseQRankSum=0.585;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.13;MQ0=3;MQRankSum=4.476;QD=21.47;ReadPosRankSum=2.71;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MICG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416822    GT:AD:DP:GQ:PL    0/1:11,47:58:99:1275,0,124
6    29785101    rs7776026    G    A    225.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MICG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416822    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:258,21,0
6    29794897    rs1233334    G    C    395.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376828    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:429,33,0
6    29795720    rs56388903    A    G    913.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=55.66;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360323    GT:AD:DP:GQ:PL    1/1:0,32:33:75.21:947,75,0
6    29795747    rs6932888    G    C    553.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6187;MQ=53.71;MQ0=0;QD=20.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360323    GT:AD:DP:GQ:PL    1/1:0,27:27:51.13:587,51,0
6    29795751    rs6932596    C    T    672.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4693;MQ=54.17;MQ0=0;QD=23.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360323    GT:AD:DP:GQ:PL    1/1:0,29:29:57.16:706,57,0
6    29796768    rs1632940    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360323    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    29855320    rs3128882    T    G    316    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:349,27,0
6    29855331    rs3132696    A    G    367.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.63;MQ0=0;QD=30.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,12:12:33.06:401,33,0
6    29855386    rs3128881    C    T    465.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.56;MQ0=0;QD=29.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,16:16:42.10:499,42,0
6    29855392    rs3128880    T    G    414.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.7;MQ0=0;QD=29.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,14:14:42.06:448,42,0
6    29855401    rs2734949    C    G    364.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.41;MQ0=0;QD=30.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,12:12:36.07:397,36,0
6    29855409    rs113606844    A    G    485.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.91;MQ0=0;QD=30.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,16:16:45.10:519,45,0
6    29855580    rs71815816    GCCCTGA    G    1856.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=287.4868;IndelType=D;MQ=40.86;MQ0=0;QD=47.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:4,35:39:99:1899,102,0
6    29855677    rs114108549    G    A    740.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.74;MQ0=0;MQRankSum=1.595;QD=28.5;ReadPosRankSum=-0.763;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:1,25:26:63.14:774,63,0
6    29855682    rs114287115    T    G    761.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.46;MQ0=0;QD=30.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,25:25:63.17:795,63,0
6    29855706    rs3128878    C    G    491.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.06;MQ0=0;QD=23.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,21:21:45.10:525,45,0
6    29855849    rs2734948    A    C    129.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.91;MQ0=0;QD=7.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,17:17:15.02:163,15,0
6    29855861    rs67564658    GA    G    330.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=267.3159;IndelType=D;MQ=23.1;MQ0=0;QD=20.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,16:13:35.79:372,36,0
6    29855864    rs9280745    A    AT    482.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=290.744;IndelType=I;MQ=23.83;MQ0=0;QD=26.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:2,16:15:42.10:525,42,0
6    29855901    rs74704281    A    G    221.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.03;MQ0=0;QD=15.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,14:14:24.01:254,24,0
6    29856022    rs113423976    G    A    177.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=25.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HCG4P7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420084    GT:AD:DP:GQ:PL    1/1:0,7:7:21.01:210,21,0
6    29856092    rs3128877    A    T    112.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=28.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:145,12,0
6    29856178    rs3128876    C    T    313.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:347,27,0
6    29856330    rs2428512    G    A    1643.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=3.163;DB;DP=55;Dels=0.0;FS=2.893;HRun=0;HaplotypeScore=2.8471;MQ=58.1;MQ0=0;MQRankSum=1.611;QD=29.88;ReadPosRankSum=-1.224;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:5,50:55:60.73:1676,61,0
6    29856347    rs3128875    C    T    1483.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.524;DB;DP=51;Dels=0.0;FS=3.104;HRun=0;HaplotypeScore=0.0;MQ=57.95;MQ0=0;MQRankSum=1.384;QD=29.1;ReadPosRankSum=-1.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:4,47:51:42.95:1517,43,0
6    29856427    rs1611614    G    A    1143.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.747;MQ=57.8;MQ0=0;MQRankSum=-0.788;QD=32.68;ReadPosRankSum=-0.368;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:1,32:35:56.30:1177,56,0
6    29856550    rs116480197    C    G    571.57    PASS    AB=0.087;AC=1;AF=0.50;AN=2;BaseQRankSum=1.037;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.164;QD=24.85;ReadPosRankSum=-0.818;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    0/1:2,21:23:20.60:602,0,21
6    29856633    rs7769342    T    C    241.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=34.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
6    29856686    rs113644113    C    G    70.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
6    29856693    rs2517819    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    29856917    rs115698353    T    C    87.76    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.752;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.85;MQ0=0;MQRankSum=-1.182;QD=7.31;ReadPosRankSum=1.611;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    0/1:2,10:12:55.39:118,0,55
6    29856961    rs113178503    G    A    31.20    MQFilter40;QDFilter2    AB=0.885;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=25.63;MQ0=3;MQRankSum=0.32;QD=1.16;ReadPosRankSum=1.232;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    0/1:23,3:27:61.19:61,0,327
6    29856977    rs116665472    T    G    62.16    MQFilter40;QDFilter2    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=3.02;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4258;MQ=25.58;MQ0=8;MQRankSum=0.249;QD=1.83;ReadPosRankSum=1.599;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    0/1:30,4:34:92.16:92,0,420
6    29857013    rs7774113    A    G    690.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.69;MQ0=11;QD=18.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,38:38:63.18:724,63,0
6    29857050    rs7755851    A    T    593.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.9;MQ0=9;QD=18.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,32:32:51.13:626,51,0
6    29857099    rs113661774    C    T    74.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.94;MQ0=10;QD=2.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,25:25:9.03:107,9,0
6    29857235    rs142456184    AG    A    464.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=143.3077;IndelType=D;MQ=17.1;MQ0=30;QD=8.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:18,34:14:39.13:507,39,0
6    29857249    rs2844818    G    A    339.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.56;MQ0=27;QD=6.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:16,34:50:33.07:373,33,0
6    29857359    rs28668506    C    A    1245.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.216;DB;DP=49;Dels=0.0;FS=3.212;HRun=0;HaplotypeScore=7.9489;MQ=45.98;MQ0=0;MQRankSum=0.332;QD=25.42;ReadPosRankSum=1.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:2,47:49:80.83:1278,81,0
6    29857410    rs3115606    T    C    1400.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.27;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1434,111,0
6    29857502    rs116463939    A    C    1443.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8305;MQ=57.25;MQ0=0;QD=24.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1477,141,0
6    29857504    rs28628412    G    A    1512.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1545,147,0
6    29857730    rs3115604    G    C    546.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=32.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:579,48,0
6    29857852    rs9259265    A    G    403.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.25;MQ0=0;QD=25.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,16:16:39.08:437,39,0
6    29857890    rs9259266    T    C    1355.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.38;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1389,105,0
6    29857901    rs9259267    T    C    1419.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.448;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.94;MQ0=0;MQRankSum=3.138;QD=30.86;ReadPosRankSum=1.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:4,42:46:71.23:1453,71,0
6    29857919    rs9259268    A    G    1528.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.93;MQ0=0;QD=30.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1561,132,0
6    29857965    rs9259269    G    A    2853.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.0128;MQ=57.66;MQ0=0;QD=33.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2887,220,0
6    29858213    rs3115603    G    C    2549.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=56.48;MQ0=0;QD=31.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2583,202,0
6    29858218    rs3115602    A    G    2257.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=56.08;MQ0=0;QD=30.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,73:74:99:2290,183,0
6    29858256    rs3128874    T    G    1758.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=54.95;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1791,147,0
6    29858294    rs3115601    A    G    1036.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=5.6215;MQ=52.04;MQ0=0;QD=22.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,46:47:93.21:1069,93,0
6    29858468    rs3115600    G    T    586.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=35.27;MQ0=0;QD=22.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:0,26:26:54.13:619,54,0
6    29858506    rs112745312    ACTTT    A    426.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=310.9299;IndelType=D;MQ=38.23;MQ0=0;QD=22.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383326    GT:AD:DP:GQ:PL    1/1:10,9:19:27.09:468,27,0
6    29883927    rs114139515    G    A    512.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7998;MQ=42.46;MQ0=0;MQRankSum=-1.404;QD=9.86;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,50:52:24.17:545,24,0
6    29883929    rs444882    A    G    492.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.214;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7998;MQ=42.46;MQ0=0;MQRankSum=-1.594;QD=9.48;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,50:52:21.18:526,21,0
6    29883986    rs367224    C    A    1834.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7356;MQ=47.92;MQ0=0;QD=28.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1867,147,0
6    29884075    rs114497716    A    G    1156.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.97;MQ0=0;QD=32.13;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,36:36:93.27:1190,93,0
6    29884117    rs383886    G    A    1321.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.68;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1354,105,0
6    29884166    rs62389566    A    T    1647.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.29;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1680,126,0
6    29884197    rs393869    A    C    1669.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.64;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1702,132,0
6    29884243    rs2471873    A    G    1075.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.94;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,35:35:87.27:1109,87,0
6    29884280    rs115922349    G    T    1013.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.29;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1047,78,0
6    29884369    rs116268838    A    G    543.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.72;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:576,42,0
6    29884405    rs2905781    C    T    213.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:246,18,0
6    29910027    rs9260115    C    G    134.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.9;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_29910022_29910403;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376806    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
6    29910034    rs2735114    G    A    132.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396634    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
6    29910083    rs3132688    A    G    178.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=22.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396634    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:212,15,0
6    29910176    rs9260118    C    T    399.21    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8936;MQ=58.25;MQ0=0;MQRankSum=1.032;QD=24.95;ReadPosRankSum=0.556;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_29910022_29910403;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376806    GT:AD:DP:GQ:PL    0/1:2,14:16:21.33:429,0,21
6    29910189    rs41557112    A    T    516.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9202;MQ=55.49;MQ0=0;MQRankSum=0.0;QD=28.71;ReadPosRankSum=-0.964;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,17:18:6.89:548,7,0
6    29910276    rs41560714    T    G    770.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=30.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,25:25:66.17:804,66,0
6    29910286    rs2916801    C    T    857.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.63;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_29910181_29910403;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396634    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:891,69,0
6    29910358    rs113259937    C    G    912.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.624;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9468;MQ=54.01;MQ0=0;MQRankSum=1.732;QD=24.02;ReadPosRankSum=-1.083;SNPEFF_AMINO_ACID_CHANGE=L10V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910309_29910403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:3,35:38:5.66:944,6,0
6    29910378    rs116698226    C    T    878.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=34;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=2.88;MQ=51.72;MQ0=0;MQRankSum=1.518;QD=25.85;ReadPosRankSum=1.032;SNPEFF_AMINO_ACID_CHANGE=A16;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910309_29910403;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:3,31:34:3.86:909,4,0
6    29910429    rs112775212    C    G    417.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.75;MQ0=0;QD=23.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,18:18:39.08:451,39,0
6    29910437    rs111622272    C    T    234.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.27;MQ0=0;QD=14.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,16:16:24.04:267,24,0
6    29910450    rs111782148    G    C    221.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.45;MQ0=0;QD=17.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,13:13:24.03:254,24,0
6    29910457    rs9260125    T    G    271.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.13;MQ0=0;QD=22.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,12:12:27.05:304,27,0
6    29910478    rs114943994    G    C    103.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=32.58;MQ0=0;QD=10.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,10:10:14.98:136,15,0
6    29910482    rs115623372    G    A    125.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.03;MQ0=0;QD=12.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,10:10:15.03:159,15,0
6    29910496    rs112950787    C    G    176.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.69;MQ0=0;QD=16.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,11:11:18.05:209,18,0
6    29910508    rs113468529    A    G    107.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=30.85;MQ0=0;QD=10.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,10:10:12.03:140,12,0
6    29910522    rs116788897    G    C    182.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.58;MQ0=0;QD=18.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,10:10:21.01:215,21,0
6    29910527    rs17879990    C    T    206.19    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.14;MQ0=0;MQRankSum=0.751;QD=22.91;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,8:9:21.04:239,21,0
6    29910538    rs74579140;rs75043149    C    T    318.26    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5618;MQ=39.13;MQ0=0;MQRankSum=0.869;QD=26.52;ReadPosRankSum=-1.448;SNPEFF_AMINO_ACID_CHANGE=S26;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,11:12:30.06:351,30,0
6    29910602    rs41552219    G    T    87.23    SnpCluster    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.785;DB;DP=34;Dels=0.0;FS=6.831;HRun=0;HaplotypeScore=0.0;MQ=44.27;MQ0=0;MQRankSum=0.736;QD=2.57;ReadPosRankSum=-0.686;SNPEFF_AMINO_ACID_CHANGE=A48S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    0/1:27,7:34:99:117,0,647
6    29910604    rs12721675    C    A    676.31    SnpCluster    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=2.906;DB;DP=35;Dels=0.0;FS=8.671;HRun=0;HaplotypeScore=0.0;MQ=43.9;MQ0=0;MQRankSum=-1.158;QD=19.32;ReadPosRankSum=0.165;SNPEFF_AMINO_ACID_CHANGE=A48;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    0/1:7,28:35:75.06:706,0,75
6    29910607    rs72555397    G    C    77.88    SnpCluster    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.726;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.9;MQ0=0;MQRankSum=0.469;QD=2.23;ReadPosRankSum=0.511;SNPEFF_AMINO_ACID_CHANGE=V49;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    0/1:28,7:35:99:108,0,804
6    29910622    .    C    T    133.46    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.522;DP=35;Dels=0.0;FS=3.876;HRun=0;HaplotypeScore=1.9983;MQ=44.61;MQ0=0;MQRankSum=-0.507;QD=3.81;ReadPosRankSum=1.279;SNPEFF_AMINO_ACID_CHANGE=D54;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    0/1:27,8:35:99:163,0,742
6    29910700    rs1059452    G    T    331.18    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.484;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=33.75;MQ0=0;MQRankSum=-0.873;QD=13.8;ReadPosRankSum=-0.611;SNPEFF_AMINO_ACID_CHANGE=G80;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:3,21:24:2.03:361,2,0
6    29910716    rs74452350    C    G    161.06    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.42;MQ0=0;MQRankSum=-0.286;QD=7.32;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=Q86E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:2,20:22:20.97:194,21,0
6    29910717    rs1064588    A    G    160.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.6;MQ0=0;QD=7.62;SNPEFF_AMINO_ACID_CHANGE=Q86R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,21:21:20.97:193,21,0
6    29910730    rs76523677    T    A    488.89    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.67;MQ0=0;MQRankSum=-0.377;QD=21.26;ReadPosRankSum=-0.377;SNPEFF_AMINO_ACID_CHANGE=N90K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,22:23:48.03:522,48,0
6    29910742    rs78073371    G    C    521.57    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;MQRankSum=0.908;QD=24.84;ReadPosRankSum=0.743;SNPEFF_AMINO_ACID_CHANGE=Q94H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,20:21:51.04:555,51,0
6    29910752    rs75646802    G    C    455.02    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.13;MQ0=0;MQRankSum=0.456;QD=23.95;ReadPosRankSum=1.187;SNPEFF_AMINO_ACID_CHANGE=D98H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29910534_29910803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,18:19:45.05:488,45,0
6    29910820    rs9260142    G    C    221.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.17;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,10:10:24.04:255,24,0
6    29910834    rs76438391    G    C    193.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.23;MQ0=0;QD=24.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,8:8:21.03:226,21,0
6    29910839    rs9260144    C    T    203.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.38;MQ0=0;QD=29.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,7:7:21.03:237,21,0
6    29910892    rs80165309    A    G    195.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:228,18,0
6    29910986    rs17882350    G    A    296.29    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.69;MQ0=0;QD=26.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,11:11:32.98:329,33,0
6    29911000    rs116640395    T    G    279.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=30.55;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,12:12:32.97:313,33,0
6    29911019    rs9260149    T    C    317.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.01;MQ0=0;QD=24.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,13:13:38.93:351,39,0
6    29911037    rs9260152    G    C    336.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.37;MQ0=0;QD=22.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,15:15:38.94:369,39,0
6    29911056    rs1071743    A    G    296.64    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.03;MQ0=0;QD=18.54;SNPEFF_AMINO_ACID_CHANGE=I119V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,16:16:35.93:330,36,0
6    29911063    rs116162943    T    G    306.18    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.03;MQ0=0;QD=19.14;SNPEFF_AMINO_ACID_CHANGE=I121R;SNPEFF_CODON_CHANGE=aTa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,16:16:41.86:339,42,0
6    29911064    rs111547432    A    G    309.02    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.03;MQ0=0;QD=19.31;SNPEFF_AMINO_ACID_CHANGE=I121M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,16:16:41.86:342,42,0
6    29911092    rs74452443    G    T    448    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.71;MQ0=0;QD=24.89;SNPEFF_AMINO_ACID_CHANGE=G131W;SNPEFF_CODON_CHANGE=Ggg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,18:18:50.92:481,51,0
6    29911114    rs3173420    G    A    581.50    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.68;MQ0=0;QD=25.28;SNPEFF_AMINO_ACID_CHANGE=R138Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,23:23:68.86:615,69,0
6    29911115    rs12721717    G    C    582.45    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.68;MQ0=0;QD=25.32;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,23:23:68.86:615,69,0
6    29911119    rs3173419    G    T    601.16    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.46;MQ0=0;QD=24.05;SNPEFF_AMINO_ACID_CHANGE=D140Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    1/1:0,25:25:68.88:634,69,0
6    29911154    rs1059509    C    A    661.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=32.51;MQ0=0;QD=23.64;SNPEFF_AMINO_ACID_CHANGE=N151K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    1/1:0,28:28:71.86:695,72,0
6    29911190    rs115532709    G    A    600.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.03;MQ0=0;QD=26.12;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,23:23:62.94:634,63,0
6    29911198    rs111853752    T    C    582.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.96;MQ0=0;QD=26.48;SNPEFF_AMINO_ACID_CHANGE=S141P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911191_29911320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,22:22:59.98:616,60,0
6    29911207    rs1059520    G    A    634.48    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.317;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=39.46;MQ0=0;MQRankSum=1.595;QD=24.4;ReadPosRankSum=1.04;SNPEFF_AMINO_ACID_CHANGE=A144T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911191_29911320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,24:26:62.99:667,63,0
6    29911228    rs9256983    A    T    766.85    MQFilter40    AB=0.162;AC=1;AF=0.50;AN=2;BaseQRankSum=1.957;DB;DP=37;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=1.5767;MQ=39.85;MQ0=0;MQRankSum=0.762;QD=20.73;ReadPosRankSum=2.081;SNPEFF_AMINO_ACID_CHANGE=R151W;SNPEFF_CODON_CHANGE=Agg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911191_29911320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    0/1:6,31:37:78.46:797,0,78
6    29911256    rs113679013    T    G    1200.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.68;MQ0=0;QD=28.59;SNPEFF_AMINO_ACID_CHANGE=D185E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1234,105,0
6    29911296    rs41559916    G    A    171.02    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=1.831;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=46.07;MQ0=0;MQRankSum=-0.277;QD=3.72;ReadPosRankSum=-0.092;SNPEFF_AMINO_ACID_CHANGE=G199R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    0/1:33,13:46:99:201,0,875
6    29911306    rs9391665    C    T    229.17    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.971;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.46;MQ0=0;MQRankSum=0.173;QD=5.21;ReadPosRankSum=0.099;SNPEFF_AMINO_ACID_CHANGE=T202M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    0/1:29,15:44:99:259,0,793
6    29911319    rs115073453    G    T    294.83    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8653;MQ=47.21;MQ0=0;MQRankSum=-0.212;QD=7.19;ReadPosRankSum=-0.609;SNPEFF_AMINO_ACID_CHANGE=T206;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911045_29911320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    0/1:24,17:41:99:325,0,646
6    29911419    rs2735112    A    G    318.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.82;MQ0=0;MQRankSum=2.073;QD=24.51;ReadPosRankSum=-1.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:2,11:13:6.41:350,6,0
6    29911457    rs71826424    G    GT    174.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=28.0541;IndelType=I;MQ=40.51;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,6:5:15.05:216,15,0
6    29911790    rs9260166    T    C    175.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.1;MQ0=7;QD=10.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,16:16:23.95:208,24,0
6    29911803    rs9260167    G    A    229.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8325;MQ=20.8;MQ0=7;QD=12.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,18:19:29.93:263,30,0
6    29911827    rs9260168    G    A    86.35    MQFilter40    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.95;MQ0=7;MQRankSum=-3.928;QD=2.11;ReadPosRankSum=3.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    0/1:32,9:41:99:116,0,854
6    29911836    rs9260169    C    T    65.27    MQFilter40;QDFilter2    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.809;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.96;MQ0=7;MQRankSum=-4.169;QD=1.31;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    0/1:41,9:50:95.27:95,0,1114
6    29911893    rs9260172    C    T    2882.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5658;MQ=42.03;MQ0=9;QD=27.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,105:105:99:2915,229,0
6    29912028    rs66729206    AG    A    1003.77    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=41;FS=31.158;HRun=2;HaplotypeScore=348.1372;IndelType=D;MQ=22.72;MQ0=34;MQRankSum=0.051;QD=13.04;ReadPosRankSum=-0.254;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_29911899_29912174;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    0/1:38,39:41:99:1043,0,233
6    29912042    rs150028516    G    A    413.33    MQFilter40    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=3.714;DB;DP=61;Dels=0.0;FS=16.99;HRun=0;HaplotypeScore=0.0;MQ=20.09;MQ0=33;MQRankSum=1.698;QD=6.78;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=V255M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911899_29912174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    0/1:27,34:61:71.96:443,0,72
6    29912108    rs2231095    G    C    238.63    MQFilter40    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.388;DB;DP=34;Dels=0.0;FS=16.782;HRun=0;HaplotypeScore=0.0;MQ=31.06;MQ0=12;MQRankSum=-0.582;QD=7.02;ReadPosRankSum=1.209;SNPEFF_AMINO_ACID_CHANGE=E277Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911899_29912174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    0/1:8,26:34:94.65:269,0,95
6    29912147    rs1059686    C    T    518.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DB;DP=25;Dels=0.0;FS=4.523;HRun=1;HaplotypeScore=2.995;MQ=42.15;MQ0=1;MQRankSum=0.144;QD=20.73;ReadPosRankSum=-0.722;SNPEFF_AMINO_ACID_CHANGE=L290;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29911899_29912174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376802    GT:AD:DP:GQ:PL    1/1:2,23:25:17.71:551,18,0
6    29912188    rs9260184    T    C    592.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.131;DB;DP=24;Dels=0.0;FS=5.006;HRun=0;HaplotypeScore=0.0;MQ=44.95;MQ0=1;MQRankSum=0.678;QD=24.69;ReadPosRankSum=0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:2,22:24:23.73:626,24,0
6    29912204    rs2276447    C    T    804.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DB;DP=32;Dels=0.0;FS=4.929;HRun=2;HaplotypeScore=0.9979;MQ=47.84;MQ0=1;MQRankSum=1.04;QD=25.13;ReadPosRankSum=1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:2,30:32:39.72:837,40,0
6    29912227    rs45473895    TGGA    T    1440.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=286.727;IndelType=D;MQ=46.37;MQ0=0;QD=46.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,30:28:84.29:1483,84,0
6    29912280    rs77430870    T    C    1251.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.06;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=L300P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29912277_29912411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376806    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1285,105,0
6    29912333    rs3179982    C    T    1875.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.79;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=L318F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29912277_29912411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376806    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1908,156,0
6    29912368    rs1141891    C    T    2129.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.02;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=A329;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29912277_29912411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376806    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2162,171,0
6    29912398    rs114142869    A    G    1572.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.56;MQ0=0;QD=30.25;SNPEFF_AMINO_ACID_CHANGE=G339;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29912277_29912411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376806    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1606,132,0
6    29912413    rs112135909    TG    T    1506.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=4;HaplotypeScore=675.0974;IndelType=D;MQ=47.19;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:2,43:45:99:1548,129,0
6    29912451    rs9260193    C    A    408.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.26;MQ0=0;QD=15.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,26:26:39.10:442,39,0
6    29912457    rs9260194    C    G    421.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.22;MQ0=0;QD=18.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,23:23:42.08:455,42,0
6    29912463    rs9260195    A    G    285.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.98;MQ0=0;QD=15.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,19:19:30.05:319,30,0
6    29912473    rs9260196    T    C    323    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.47;MQ0=0;QD=17.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,18:18:33.06:356,33,0
6    29912477    rs9260197    A    G    344.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.98;MQ0=0;QD=18.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,19:19:36.04:378,36,0
6    29912493    rs113155820    G    A    260.63    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.97;MQ0=0;QD=18.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,14:14:30.01:294,30,0
6    29912494    rs2975059    T    C    259.66    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=30.97;MQ0=0;QD=18.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,14:14:30.01:293,30,0
6    29912502    rs9260198    C    T    282.94    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.12;MQ0=0;QD=21.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,13:13:30.03:316,30,0
6    29912517    rs1655895    T    C    208.35    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.37;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,8:8:24:241,24,0
6    29912595    rs116303213    G    A    376.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.43;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:410,33,0
6    29912652    rs41560423    CAGA    C    606.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=181.9314;IndelType=D;MQ=35.17;MQ0=0;QD=40.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:1,14:13:36.12:649,36,0
6    29912668    rs9260201    T    G    290.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.3;MQ0=0;QD=17.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,17:17:33.02:323,33,0
6    29912669    rs9260202    A    G    339.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.21;MQ0=0;QD=18.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,18:18:36.03:372,36,0
6    29912754    rs3823323    G    A    2848.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=50.17;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,88:89:99:2882,226,0
6    29912766    rs3823324    A    T    3059.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=47.66;MQ0=1;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3092,241,0
6    29912796    rs116397005    G    A    3424.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=45.83;MQ0=3;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3425,268,0
6    29912830    rs80249310    T    C    2925.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=46.78;MQ0=3;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,103:104:99:2958,235,0
6    29912852    rs75562132    T    C    2849.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.53;MQ0=4;QD=27.67;SNPEFF_AMINO_ACID_CHANGE=S343;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29912836_29912868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376809    GT:AD:DP:GQ:PL    1/1:0,103:103:99:2883,226,0
6    29912856    rs2231119    A    T    2928.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.4;MQ0=4;QD=28.16;SNPEFF_AMINO_ACID_CHANGE=T345S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29912836_29912868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376809    GT:AD:DP:GQ:PL    1/1:0,104:104:99:2962,229,0
6    29912935    rs77676163    C    T    2421.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3935;MQ=46.34;MQ0=2;QD=28.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2454,205,0
6    29912944    rs112708984    T    C    2640.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6275;MQ=48.45;MQ0=1;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355767    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2674,217,0
6    29913042    rs112763429    C    T    2498.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=53.07;MQ0=0;QD=32.45;SNPEFF_AMINO_ACID_CHANGE=S108;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_29913011_29913058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536480    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2532,196,0
6    29913067    rs3823342    T    C    1624.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=52.09;MQ0=0;QD=30.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461903    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1658,129,0
6    29913074    rs9260205    A    G    1602.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=52.22;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461903    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1635,126,0
6    29913078    rs41546815    A    G    1477.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=52.86;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461903    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1510,114,0
6    29913135    rs113282585    G    C    973.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.75;MQ0=0;QD=29.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461903    GT:AD:DP:GQ:PL    1/1:0,32:33:78.24:1006,78,0
6    29913171    rs112296394    G    A    1027.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.82;MQ0=0;QD=27.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461903    GT:AD:DP:GQ:PL    1/1:0,37:37:87.24:1060,87,0
6    29913191    rs2975055    T    C    952.46    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.37;MQ0=0;QD=22.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461903    GT:AD:DP:GQ:PL    1/1:0,43:43:99:985,102,0
6    29913192    rs9260210    G    A    955.34    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.37;MQ0=0;QD=22.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461903    GT:AD:DP:GQ:PL    1/1:0,43:43:99:988,102,0
6    29913197    rs2975054    T    C    1232.76    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.3;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461903    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1266,102,0
6    29942983    rs378971    G    A    548.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7781;MQ=58.78;MQ0=0;QD=28.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=HCG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376800    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:582,45,0
6    29943067    rs6904029    G    A    392.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=23.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=HCG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376800    GT:AD:DP:GQ:PL    1/1:0,17:17:33.10:425,33,0
6    29943178    rs6903753    A    G    174.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=HCG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376800    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
6    29976789    rs116774439    T    C    2086.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5253;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNRD1-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444051    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2119,169,0
6    29976838    rs2275854    A    G    3219.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6155;MQ=59.55;MQ0=0;QD=31.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNRD1-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444051    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3252,256,0
6    30024677    rs9366752    C    T    867.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9993;MQ=58.99;MQ0=0;QD=37.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332435    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:901,66,0
6    30030114    rs9261269    A    G    1004.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332435    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1038,78,0
6    30075641    rs2240069    A    G    61.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480808    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:93,9,0
6    30075843    rs3132679    T    C    1458.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=27.52;SNPEFF_AMINO_ACID_CHANGE=L290;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30075830_30075968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376728    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1492,120,0
6    30075864    rs2023472    A    G    1662.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.47;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=58.82;MQ0=0;MQRankSum=-1.196;QD=26.39;ReadPosRankSum=-0.882;SNPEFF_AMINO_ACID_CHANGE=H283;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30075830_30075968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376728    GT:AD:DP:GQ:PL    1/1:2,61:63:93.63:1696,94,0
6    30075903    rs111366118    C    T    1752.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.912;MQ=58.6;MQ0=0;MQRankSum=1.532;QD=33.07;ReadPosRankSum=0.067;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000496062    GT:AD:DP:GQ:PL    1/1:1,52:53:97.78:1786,98,0
6    30076016    rs115165974    C    T    680.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.56;MQ0=0;QD=30.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480808    GT:AD:DP:GQ:PL    1/1:0,22:22:57.13:713,57,0
6    30076018    rs3132122    C    G    592.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.2;MQ0=0;QD=29.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480808    GT:AD:DP:GQ:PL    1/1:0,20:20:51.12:625,51,0
6    30076064    rs3132678    A    G    376    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480808    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:409,30,0
6    30076069    rs2023471    C    A    331.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480808    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:365,27,0
6    30076630    rs2240068    G    T    578.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493404    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:611,45,0
6    30104783    rs116616001    A    G    452.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489892    GT:AD:DP:GQ:PL    1/1:0,17:17:39.11:486,39,0
6    30104808    rs113997222    G    A    630.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489892    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:663,48,0
6    30113955    rs3815082    A    G    255.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307859    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
6    30114623    rs4959011    T    A    283.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307859    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:317,24,0
6    30114666    rs114467419    C    T    489.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307859    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:523,39,0
6    30114845    rs4959012    T    C    2082.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=34.71;SNPEFF_AMINO_ACID_CHANGE=P175;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30114762_30114986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376724    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2116,169,0
6    30114955    rs115029820    C    T    3798.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.7;DB;DP=110;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=59.58;MQ0=0;MQRankSum=-1.414;QD=34.22;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=T183M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30114849_30114986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307859    GT:AD:DP:GQ:PL    1/1:1,109:110:99:3798,277,0
6    30115063    rs757261    G    A    1160.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=36.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376704    GT:AD:DP:GQ:PL    1/1:0,32:32:93.30:1193,93,0
6    30115484    rs115249742    A    G    2591.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=32.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376704    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2625,208,0
6    30115542    rs116628559    G    A    2705.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8808;MQ=59.72;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=E215K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30115502_30116512;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307859    GT:AD:DP:GQ:PL    1/1:0,79:80:99:2739,205,0
6    30121258    rs116285907    T    C    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376706    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    30121460    rs2022065    C    T    531.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376706    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:565,42,0
6    30122154    rs3094134    T    C    1329.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=Q346;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30122088_30122263;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376704    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1362,99,0
6    30122575    rs114121521    C    T    562.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376704    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:596,45,0
6    30131349    rs9261536    T    C    173.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376704    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
6    30138662    rs1029237    C    T    563.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376688    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:596,45,0
6    30139699    rs929156    G    A    243.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=S255N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30139609_30140466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376695    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
6    30140342    rs1063280    T    C    73.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477944    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:106,9,0
6    30154199    rs2074473    T    C    2496.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.441;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.98;MQ0=0;MQRankSum=-1.902;QD=30.82;ReadPosRankSum=1.263;SNPEFF_AMINO_ACID_CHANGE=L358;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30152232_30154335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437089    GT:AD:DP:GQ:PL    1/1:2,79:81:99:2530,154,0
6    30154350    rs34521005    G    GAA    494.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=13;HaplotypeScore=167.0405;IndelType=I;MQ=52.67;MQ0=0;QD=23.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437089    GT:AD:DP:GQ:PL    1/1:6,13:21:44.61:537,45,0
6    30157654    rs114263445    G    A    317.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437089    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:351,30,0
6    30229869    rs3130397    T    C    164.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420110    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
6    30297018    .    CA    C    65.24    QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DP=95;FS=0.0;HRun=14;HaplotypeScore=486.8448;IndelType=D;MQ=55.57;MQ0=0;MQRankSum=0.294;QD=0.69;ReadPosRankSum=0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376656    GT:AD:DP:GQ:PL    0/1:77,13:95:99:104,0,1419
6    30313268    rs11967    G    A    355.20    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.159;QD=29.6;ReadPosRankSum=0.579;SNPEFF_AMINO_ACID_CHANGE=R61;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30313244_30313350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433076    GT:AD:DP:GQ:PL    0/1:1,11:12:4.53:384,0,5
6    30314116    rs116804443    G    A    700.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376656    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:734,57,0
6    30530245    rs114696540    T    C    2465.99    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=4.571;DB;DP=169;Dels=0.0;FS=1.391;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=14.59;ReadPosRankSum=-0.276;SNPEFF_AMINO_ACID_CHANGE=H159;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30530166_30531500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376557    GT:AD:DP:GQ:PL    0/1:82,87:169:99:2496,0,2510
6    30574194    rs116025821    C    T    1418.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484449    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1451,108,0
6    30575603    rs115885950    A    G    4429.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.575;MQ=59.18;MQ0=0;QD=32.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484449    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4429,340,0
6    30628082    rs3130000    A    G    371.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415603    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:404,30,0
6    30670292    rs9405048    C    T    373.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492462    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:407,30,0
6    30679628    rs3094093    T    A    2101.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7297;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416571    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2134,156,0
6    30711805    rs3094124    C    G    730.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.317;QD=29.23;ReadPosRankSum=-1.04;SNPEFF_AMINO_ACID_CHANGE=A127P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30710976_30711973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IER3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259874    GT:AD:DP:GQ:PL    1/1:1,24:25:26.20:764,26,0
6    30781904    rs12210318    G    A    426.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00243;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399196    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:459,36,0
6    30781923    rs4286818    T    C    491.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=32.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00243;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399196    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:525,39,0
6    30782105    rs114375391    T    C    3879.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7169;MQ=56.7;MQ0=0;QD=32.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00243;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399196    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3879,298,0
6    30782218    rs5875275    C    CTGTT    9866.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;FS=0.0;HRun=0;HaplotypeScore=906.8946;IndelType=I;MQ=51.25;MQ0=0;QD=77.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00243;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399196    GT:AD:DP:GQ:PL    1/1:17,105:128:99:9867,370,0
6    30782235    rs2394412    G    A    4396.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=52.63;MQ0=0;QD=32.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00243;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399196    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4397,340,0
6    30782303    rs2394413    C    T    4379.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=2.6971;MQ=57.1;MQ0=0;QD=29.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00243;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399196    GT:AD:DP:GQ:PL    1/1:0,147:148:99:4379,349,0
6    30782323    rs2394414    T    C    4238.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.811;MQ=57.41;MQ0=0;QD=31.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00243;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399196    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4238,334,0
6    30782407    rs114882241    A    G    2248.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.29;MQ0=0;QD=35.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00243;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399196    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2282,178,0
6    30857072    rs2229933    G    C    609.70    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.404;DB;DP=45;Dels=0.0;FS=6.152;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=13.55;ReadPosRankSum=1.406;SNPEFF_AMINO_ACID_CHANGE=L112;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30856979_30857207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508312    GT:AD:DP:GQ:PL    0/1:26,19:45:99:640,0,761
6    30858857    rs1049622    C    T    269.53    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=38;Dels=0.0;FS=3.074;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.178;QD=7.09;ReadPosRankSum=0.503;SNPEFF_AMINO_ACID_CHANGE=S175;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30858750_30858897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324771    GT:AD:DP:GQ:PL    0/1:26,12:38:99:300,0,714
6    30859355    rs76515658    G    A    123.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=1.001;QD=13.76;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396342    GT:AD:DP:GQ:PL    0/1:3,6:9:63.82:154,0,64
6    30862423    rs1264319    C    T    482.51    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=3.233;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-2.11;QD=10.27;ReadPosRankSum=1.452;SNPEFF_AMINO_ACID_CHANGE=P152L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30862365_30862448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451954    GT:AD:DP:GQ:PL    0/1:29,18:47:99:512,0,728
6    30864829    rs116629156    T    C    3214.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.02;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=V303;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30864791_30864918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361741    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3248,238,0
6    30865204    rs115945341    A    C    190.27    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.574;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.665;QD=6.56;ReadPosRankSum=0.161;SNPEFF_AMINO_ACID_CHANGE=P349;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30865156_30865374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361741    GT:AD:DP:GQ:PL    0/1:19,10:29:99:220,0,630
6    30865725    rs116432342    C    T    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465966    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    30867106    rs1049628    C    T    488.73    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.182;DB;DP=31;Dels=0.0;FS=4.508;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=15.77;ReadPosRankSum=0.187;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417521    GT:AD:DP:GQ:PL    0/1:15,16:31:99:519,0,334
6    30867666    rs115578384    T    C    418.39    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.132;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.57;QD=22.02;ReadPosRankSum=-0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417521    GT:AD:DP:GQ:PL    0/1:6,13:19:99:448,0,188
6    30867958    rs9468843    T    C    1165.75    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.29;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7287;MQ=59.13;MQ0=0;MQRankSum=-0.191;QD=14.57;ReadPosRankSum=0.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324771    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1196,0,1321
6    30876996    rs115706253    G    C    93.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.922;QD=11.74;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259895    GT:AD:DP:GQ:PL    0/1:4,4:8:99:124,0,136
6    30877054    rs114837317    G    A    74.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.72;QD=12.36;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259895    GT:AD:DP:GQ:PL    0/1:2,4:6:62.06:104,0,62
6    30877202    rs916920    T    C    482.44    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.57;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.052;QD=14.19;ReadPosRankSum=-2.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259895    GT:AD:DP:GQ:PL    0/1:16,18:34:99:512,0,530
6    30877760    rs1419693    A    C    1269.47    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=4.268;DB;DP=89;Dels=0.0;FS=0.798;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.417;QD=14.26;ReadPosRankSum=0.045;SNPEFF_AMINO_ACID_CHANGE=T42;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30877709_30877840;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539324    GT:AD:DP:GQ:PL    0/1:40,49:89:99:1299,0,1237
6    30878579    rs3218814    A    T    184.76    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.387;QD=16.8;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453897    GT:AD:DP:GQ:PL    0/1:5,6:11:99:215,0,150
6    30878769    rs115122565    C    T    66.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.35;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453897    GT:AD:DP:GQ:PL    0/1:4,4:8:96.83:97,0,142
6    30878919    rs2074512    T    C    1013.57    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.062;DB;DP=51;Dels=0.0;FS=5.456;HRun=2;HaplotypeScore=3.6805;MQ=59.55;MQ0=0;MQRankSum=0.146;QD=19.87;ReadPosRankSum=-0.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453897    GT:AD:DP:GQ:PL    0/1:19,32:51:99:1044,0,619
6    30881021    rs3218824    A    G    551.64    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=45;Dels=0.0;FS=2.524;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.586;QD=12.26;ReadPosRankSum=0.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453897    GT:AD:DP:GQ:PL    0/1:26,19:45:99:582,0,905
6    30883878    rs113467070    AAAGCAACC    A    4899.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.0;HRun=0;HaplotypeScore=717.4953;IndelType=D;MQ=40.22;MQ0=0;QD=59.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259895    GT:AD:DP:GQ:PL    1/1:17,65:82:99:4899,199,0
6    30887780    .    C    CTGGGGCGGTGCAGGTGA    1670.33    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.515;DP=31;FS=2.046;HRun=0;HaplotypeScore=343.8091;IndelType=I;MQ=52.05;MQ0=0;MQRankSum=-3.856;QD=53.88;ReadPosRankSum=-0.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413959    GT:AD:DP:GQ:PL    0/1:24,3:31:99:1709,0,1669
6    30887972    rs116048444    C    T    483.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.249;DB;DP=30;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=0.0;MQ=57.01;MQ0=0;MQRankSum=-0.826;QD=16.1;ReadPosRankSum=-1.334;SNPEFF_AMINO_ACID_CHANGE=S284;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30887866_30887993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542001    GT:AD:DP:GQ:PL    0/1:12,18:30:99:513,0,366
6    30888161    rs2249464    T    C    323.63    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.089;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-2.535;QD=9.81;ReadPosRankSum=1.237;SNPEFF_AMINO_ACID_CHANGE=W309R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30888110_30888213;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542001    GT:AD:DP:GQ:PL    0/1:20,12:33:99:354,0,545
6    30888617    rs7766094    G    A    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413959    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:67,0,30
6    30889389    rs2074511    T    C    109.96    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=16;Dels=0.0;FS=5.825;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=6.87;ReadPosRankSum=-1.482;SNPEFF_AMINO_ACID_CHANGE=V412;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30889366_30889468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542001    GT:AD:DP:GQ:PL    0/1:9,7:16:99:140,0,285
6    30890195    rs116471336    A    G    748.98    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.226;DB;DP=65;Dels=0.0;FS=14.913;HRun=0;HaplotypeScore=0.5784;MQ=59.29;MQ0=0;MQRankSum=1.536;QD=11.52;ReadPosRankSum=0.494;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413959    GT:AD:DP:GQ:PL    0/1:36,29:65:99:779,0,1191
6    30890431    rs885905    A    G    1157.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.3;MQ0=0;MQRankSum=0.998;QD=35.07;ReadPosRankSum=-1.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413959    GT:AD:DP:GQ:PL    1/1:1,32:33:90.26:1190,90,0
6    30890789    rs3873330    G    A    563.52    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.192;DB;DP=32;Dels=0.0;FS=5.488;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.384;QD=17.61;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321897    GT:AD:DP:GQ:PL    0/1:13,19:32:99:594,0,434
6    30890871    rs115473529    T    C    788.37    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=2.614;DB;DP=50;Dels=0.0;FS=2.654;HRun=3;HaplotypeScore=0.9469;MQ=59.07;MQ0=0;MQRankSum=0.334;QD=15.77;ReadPosRankSum=-0.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321897    GT:AD:DP:GQ:PL    0/1:21,29:50:99:818,0,711
6    30892054    rs2257347    A    G    371.19    PASS    AB=0.067;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.56;MQ0=0;MQRankSum=0.579;QD=24.75;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477052    GT:AD:DP:GQ:PL    0/1:1,14:15:1.53:400,0,2
6    30893127    rs9394021    G    A    63.02    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=57.05;MQ0=0;MQRankSum=-0.956;QD=7.88;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=R777Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30893051_30893162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542001    GT:AD:DP:GQ:PL    0/1:5,3:8:93.02:93,0,145
6    30893728    rs1043483    C    T    2214.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=35.14;SNPEFF_AMINO_ACID_CHANGE=D1011;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30893657_30893785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321897    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2247,171,0
6    30893941    rs4678    G    A    853.40    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.287;DB;DP=63;Dels=0.0;FS=2.177;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.44;QD=13.55;ReadPosRankSum=-0.036;SNPEFF_AMINO_ACID_CHANGE=R1049Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30893886_30894236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321897    GT:AD:DP:GQ:PL    0/1:32,31:63:99:883,0,847
6    30899163    rs2532925    G    A    133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321897    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
6    30899233    rs114971990    C    T    146.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=14.67;ReadPosRankSum=1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321897    GT:AD:DP:GQ:PL    0/1:5,5:10:99:177,0,144
6    30899377    rs2253588    C    G    594.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFTA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359086    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:628,51,0
6    30899524    rs3131787    T    C    616.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.624;DB;DP=60;Dels=0.0;FS=2.203;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.21;QD=10.28;ReadPosRankSum=-0.598;SNPEFF_AMINO_ACID_CHANGE=N37S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30899484_30899572;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFTA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359086    GT:AD:DP:GQ:PL    0/1:36,24:60:99:647,0,1092
6    30899571    rs2286656    C    T    889.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.411;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.62;MQ0=0;MQRankSum=0.807;QD=14.83;ReadPosRankSum=-0.732;SNPEFF_AMINO_ACID_CHANGE=G21;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30899484_30899572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFTA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359086    GT:AD:DP:GQ:PL    0/1:24,36:60:99:920,0,673
6    30899577    rs17196074    G    A    652.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=56;Dels=0.0;FS=1.123;HRun=0;HaplotypeScore=0.9789;MQ=59.59;MQ0=0;MQRankSum=-0.571;QD=11.65;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFTA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359086    GT:AD:DP:GQ:PL    0/1:32,24:56:99:683,0,909
6    30899746    rs2286655    G    A    60.17    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFTA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359086    GT:AD:DP:GQ:PL    0/1:5,3:8:90.17:90,0,144
6    30920957    rs116155659    G    A    178.90    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=11.93;ReadPosRankSum=0.065;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304311    GT:AD:DP:GQ:PL    0/1:8,7:15:99:209,0,291
6    30954245    rs116749480    T    C    5923.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4948;MQ=59.72;MQ0=0;QD=32.73;SNPEFF_AMINO_ACID_CHANGE=V98A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30954014_30955458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376296    GT:AD:DP:GQ:PL    1/1:0,181:181:99:5924,463,0
6    30954873    rs1625781    G    A    2258.65    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=3.105;DB;DP=159;Dels=0.0;FS=2.893;HRun=1;HaplotypeScore=5.9252;MQ=59.56;MQ0=0;MQRankSum=0.21;QD=14.21;ReadPosRankSum=-0.148;SNPEFF_AMINO_ACID_CHANGE=T307;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_30954014_30955458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376296    GT:AD:DP:GQ:PL    0/1:77,82:159:99:2289,0,2167
6    30955681    rs1634731    G    A    499.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486149    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:532,42,0
6    31083656    rs3094217    G    A    166.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259881    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
6    31083664    rs1042134    G    A    169.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259881    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:202,15,0
6    31083729    rs3095297    A    C    455.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259881    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:489,36,0
6    31083797    rs66485631    ACTT    A    1741.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=316.6953;IndelType=D;MQ=53.89;MQ0=0;QD=47.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259881    GT:AD:DP:GQ:PL    1/1:1,36:37:99:1784,108,0
6    31083813    rs3130981    T    C    1206.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=30.16;SNPEFF_AMINO_ACID_CHANGE=N527D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,40:40:96.30:1239,96,0
6    31084075    rs3130982    G    C    681.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_AMINO_ACID_CHANGE=S439;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:715,54,0
6    31084163    rs3132554    A    G    286.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=L410S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
6    31084288    rs1042126    T    C    244.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_AMINO_ACID_CHANGE=A368;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
6    31084435    rs1062470    G    A    578.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.54;SNPEFF_AMINO_ACID_CHANGE=Y319;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,21:21:45.14:611,45,0
6    31084684    rs3094215    G    A    646.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=S236;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:680,51,0
6    31084787    rs707913    A    G    234.12    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.703;DB;DP=36;Dels=0.0;FS=1.5;HRun=0;HaplotypeScore=2.1445;MQ=58.18;MQ0=0;MQRankSum=0.312;QD=6.5;ReadPosRankSum=1.796;SNPEFF_AMINO_ACID_CHANGE=F202S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    0/1:27,9:36:99:264,0,743
6    31084792    rs3130983    C    T    1099.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1445;MQ=58.83;MQ0=0;QD=30.55;SNPEFF_AMINO_ACID_CHANGE=Q200;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1133,87,0
6    31084964    rs3130984    T    C    1131.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.58;MQ0=0;QD=30.59;SNPEFF_AMINO_ACID_CHANGE=N143S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,37:37:93.25:1165,93,0
6    31085200    rs3132553    A    G    119.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=G64;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31082867_31085306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376288    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
6    31087934    rs3095320    G    A    38.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
6    31088202    rs2302399    A    G    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    31097183    rs3130558    C    G    213.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259881    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
6    31097301    rs3130559    C    T    513.90    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.88;DB;DP=37;Dels=0.0;FS=3.378;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.112;QD=13.89;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259881    GT:AD:DP:GQ:PL    0/1:20,17:37:99:544,0,728
6    31097453    rs3130560    T    G    1271.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259881    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1304,99,0
6    31105891    rs2233952    A    G    657.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.41;SNPEFF_AMINO_ACID_CHANGE=L83P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31105313_31106083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSORS1C2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259845    GT:AD:DP:GQ:PL    1/1:0,24:24:54.15:691,54,0
6    31106177    rs1265098    T    C    391.25    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DB;DP=42;Dels=0.0;FS=3.711;HRun=0;HaplotypeScore=2.4063;MQ=60.0;MQ0=0;MQRankSum=0.787;QD=9.32;ReadPosRankSum=-0.551;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_31106136_31106236;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547221    GT:AD:DP:GQ:PL    0/1:27,15:42:99:421,0,863
6    31106268    rs3130573    A    G    718.12    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=65;Dels=0.0;FS=9.407;HRun=0;HaplotypeScore=0.8667;MQ=59.71;MQ0=0;MQRankSum=1.428;QD=11.05;ReadPosRankSum=0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:37,28:65:99:748,0,1177
6    31106409    rs3132557    A    G    1477.58    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=112;Dels=0.0;FS=4.706;HRun=1;HaplotypeScore=4.2455;MQ=59.42;MQ0=0;MQRankSum=0.358;QD=13.19;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:59,53:112:99:1508,0,1788
6    31106489    rs1265096    G    A    1425.90    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=3.211;DB;DP=108;Dels=0.0;FS=0.723;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=0.328;QD=13.2;ReadPosRankSum=0.553;SNPEFF_AMINO_ACID_CHANGE=E34K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31106433_31106556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSORS1C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259881    GT:AD:DP:GQ:PL    0/1:59,49:108:99:1456,0,1720
6    31106643    rs1265095    G    A    1120.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.504;DB;DP=72;Dels=0.0;FS=6.982;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=15.57;ReadPosRankSum=-2.641;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1151,0,1103
6    31106893    rs1265094    A    G    94.48    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=10.5;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:5,4:9:99:124,0,178
6    31107258    rs2285803    T    C    71.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
6    31107317    rs1265092    C    T    108.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.08;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:2,4:6:64.35:138,0,64
6    31107733    rs1966    C    T    996.67    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=3.794;DB;DP=68;Dels=0.0;FS=1.013;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.608;QD=14.66;ReadPosRankSum=-0.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1027,0,904
6    31107904    rs2233942    C    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    31110391    rs114805105    G    C    651.12    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=39;Dels=0.0;FS=8.553;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.807;QD=16.7;ReadPosRankSum=-1.827;SNPEFF_AMINO_ACID_CHANGE=S723C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31110221_31110493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396263    GT:AD:DP:GQ:PL    0/1:17,22:39:99:681,0,519
6    31110671    rs1265085    G    C    2615.35    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=6.499;DB;DP=170;Dels=0.0;FS=0.645;HRun=1;HaplotypeScore=4.5646;MQ=59.73;MQ0=0;MQRankSum=1.936;QD=15.38;ReadPosRankSum=2.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467553    GT:AD:DP:GQ:PL    0/1:78,92:170:99:2645,0,2075
6    31111180    rs116589007    T    C    1476.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=36.91;SNPEFF_AMINO_ACID_CHANGE=L584;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31111039_31111190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396263    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1510,111,0
6    31112602    rs114573185    G    C    1854.43    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.352;DB;DP=127;Dels=0.0;FS=0.685;HRun=1;HaplotypeScore=4.7421;MQ=59.09;MQ0=0;MQRankSum=0.175;QD=14.6;ReadPosRankSum=-0.089;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480060    GT:AD:DP:GQ:PL    0/1:62,65:127:99:1884,0,1933
6    31112737    rs130079    C    A    683.41    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.68;DB;DP=54;Dels=0.0;FS=1.225;HRun=0;HaplotypeScore=1.6988;MQ=59.14;MQ0=0;MQRankSum=0.046;QD=12.66;ReadPosRankSum=1.239;SNPEFF_AMINO_ACID_CHANGE=G522C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31112662_31112850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396263    GT:AD:DP:GQ:PL    0/1:30,24:54:99:713,0,887
6    31112899    rs3094226    C    T    980.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480060    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1014,75,0
6    31112925    rs2073719    C    T    1105.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480060    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1139,87,0
6    31113030    rs112809097    A    G    612.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.74;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=L455;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31112943_31113079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396263    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:646,48,0
6    31113052    rs3094225    G    A    755.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.9;MQ0=0;QD=35.96;SNPEFF_AMINO_ACID_CHANGE=D447;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31112943_31113079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396263    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:788,60,0
6    31113083    rs75364078    G    A    157.88    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=17;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=2.4102;MQ=56.07;MQ0=0;MQRankSum=0.648;QD=9.29;ReadPosRankSum=-0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480060    GT:AD:DP:GQ:PL    0/1:11,6:17:99:188,0,314
6    31113106    rs3130575    A    G    654.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=34.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480060    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:687,54,0
6    31113113    rs114934621    C    A    342.56    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=19;Dels=0.0;FS=6.107;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-1.648;QD=18.03;ReadPosRankSum=-0.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480060    GT:AD:DP:GQ:PL    0/1:7,12:19:99:373,0,235
6    31113214    rs114566751    C    A    779.53    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=56;Dels=0.0;FS=3.828;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.458;QD=13.92;ReadPosRankSum=-0.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480060    GT:AD:DP:GQ:PL    0/1:26,30:56:99:810,0,712
6    31116142    rs1265067    G    A    1470.21    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=3.228;DB;DP=99;Dels=0.0;FS=2.899;HRun=0;HaplotypeScore=1.3123;MQ=59.53;MQ0=0;MQRankSum=1.746;QD=14.85;ReadPosRankSum=1.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448141    GT:AD:DP:GQ:PL    0/1:43,56:99:99:1500,0,1205
6    31116246    rs115863521    G    A    1173.46    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.73;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.405;QD=14.31;ReadPosRankSum=1.613;SNPEFF_AMINO_ACID_CHANGE=R417W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31116182_31116288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:44,38:82:99:1203,0,1312
6    31116526    rs115321690    A    G    1322.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448141    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1355,102,0
6    31117577    rs114689412    C    G    117.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412245    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
6    31117578    rs3132533    A    G    120.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412245    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
6    31117619    rs114249961    T    C    167.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412245    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
6    31118019    rs1265112    T    C    186.70    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.177;QD=10.37;ReadPosRankSum=-0.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412245    GT:AD:DP:GQ:PL    0/1:11,7:18:99:217,0,348
6    31118511    rs130067    T    G    2048.37    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.336;DB;DP=141;Dels=0.0;FS=2.673;HRun=0;HaplotypeScore=1.7333;MQ=59.84;MQ0=0;MQRankSum=-1.062;QD=14.53;ReadPosRankSum=-0.749;SNPEFF_AMINO_ACID_CHANGE=E275D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31118502_31118637;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:68,73:141:99:2078,0,2177
6    31118565    rs130078    C    G    5522.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=59.74;MQ0=0;QD=31.03;SNPEFF_AMINO_ACID_CHANGE=V257;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31118502_31118637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    1/1:0,178:178:99:5523,412,0
6    31118942    rs114223744    T    C    1317.56    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.343;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.108;QD=15.5;ReadPosRankSum=0.514;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412245    GT:AD:DP:GQ:PL    0/1:38,47:85:99:1348,0,1091
6    31122126    rs2073717    G    C    2010.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=35.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412245    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2043,166,0
6    31122315    rs130066    G    C    7480.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=232;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=S128R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31122273_31122576;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448141    GT:AD:DP:GQ:PL    1/1:0,232:232:99:7480,569,0
6    31122482    rs130076    G    A    500.35    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=46;Dels=0.0;FS=6.88;HRun=0;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=0.597;QD=10.88;ReadPosRankSum=1.309;SNPEFF_AMINO_ACID_CHANGE=R109W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31122273_31122576;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:27,19:46:99:530,0,731
6    31122500    rs130065    G    A    489.58    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=41;Dels=0.0;FS=7.405;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-0.091;QD=11.94;ReadPosRankSum=0.091;SNPEFF_AMINO_ACID_CHANGE=R103W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31122273_31122576;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    0/1:21,20:41:99:520,0,614
6    31124849    rs3130453    C    T    3861.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.281;QD=32.45;ReadPosRankSum=-1.11;SNPEFF_AMINO_ACID_CHANGE=W78*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_6_31124800_31124866;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000396268    GT:AD:DP:GQ:PL    1/1:1,118:119:99:3862,266,0
6    31125067    rs10602569    C    CAACT    1454.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=80.0619;IndelType=I;MQ=53.01;MQ0=0;QD=63.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376266    GT:AD:DP:GQ:PL    1/1:4,19:23:57.20:1497,57,0
6    31125158    rs743401    C    T    1636.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=E74K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31125135_31125565;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCHCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426967    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1670,123,0
6    31127562    rs1150765    C    T    166.84    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=18.54;ReadPosRankSum=-0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    0/1:2,7:9:50.68:197,0,51
6    31127602    rs115859547    G    A    209.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:242,18,0
6    31129616    rs2073721    A    G    1029.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.631;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.0;QD=30.28;ReadPosRankSum=-1.427;SNPEFF_AMINO_ACID_CHANGE=M131V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31129226_31129782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542218    GT:AD:DP:GQ:PL    1/1:1,33:34:44.63:1063,45,0
6    31129642    rs112941857    A    C    1045.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.3;QD=32.66;ReadPosRankSum=-0.217;SNPEFF_AMINO_ACID_CHANGE=P139;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31129226_31129782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542218    GT:AD:DP:GQ:PL    1/1:1,31:32:49.05:1078,49,0
6    31130078    rs114799468    T    C    254.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
6    31130502    rs1065461    T    C    826.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:860,69,0
6    31130593    rs1419881    G    A    243.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
6    31132140    rs13409    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448657    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    31132414    rs114284229    G    A    468.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=24.84;MQ0=8;QD=17.34;SNPEFF_AMINO_ACID_CHANGE=S153;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31132128_31132644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441888    GT:AD:DP:GQ:PL    1/1:2,25:27:45.09:501,45,0
6    31132649    rs2394882    A    C    2024.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=52.42;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461401    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2058,157,0
6    31132689    rs34176717    T    TGA    1386.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=156.231;IndelType=I;MQ=54.25;MQ0=0;QD=42.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461401    GT:AD:DP:GQ:PL    1/1:7,26:33:81.28:1428,81,0
6    31133509    rs2106074    G    A    861.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.37;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376255    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:895,69,0
6    31133577    rs143097483    A    AAAGCCC    971.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=81.1371;IndelType=I;MQ=41.96;MQ0=0;QD=80.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376255    GT:AD:DP:GQ:PL    1/1:4,8:12:36.12:1013,36,0
6    31133620    rs34631505    T    TAG    833.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=82.5559;IndelType=I;MQ=50.44;MQ0=0;QD=49.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376255    GT:AD:DP:GQ:PL    1/1:2,15:16:48.16:875,48,0
6    31133943    rs3130932    C    A    638.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=35.45;SNPEFF_AMINO_ACID_CHANGE=R1M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31133704_31134615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541552    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:671,51,0
6    31137759    rs76809711    T    C    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542218    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    31137774    rs3094193    G    T    66.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542218    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:98,9,0
6    31137804    rs112781924    C    G    160.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542218    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:194,15,0
6    31137837    rs114527338    A    T    409.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542218    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:443,33,0
6    31138107    rs1062630    G    A    453.45    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.334;DB;DP=42;Dels=0.0;FS=1.309;HRun=0;HaplotypeScore=0.734;MQ=58.37;MQ0=0;MQRankSum=0.174;QD=10.8;ReadPosRankSum=0.976;SNPEFF_AMINO_ACID_CHANGE=G97;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31137993_31138470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    0/1:26,16:42:99:483,0,663
6    31138310    rs41257954    C    T    117.92    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=17;Dels=0.0;FS=2.246;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.423;QD=6.94;ReadPosRankSum=0.741;SNPEFF_AMINO_ACID_CHANGE=V30I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31137993_31138470;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    0/1:10,7:17:99:148,0,292
6    31138371    rs1265160    G    A    96.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=15;Dels=0.0;FS=2.216;HRun=3;HaplotypeScore=0.0;MQ=57.26;MQ0=0;MQRankSum=0.429;QD=6.44;ReadPosRankSum=-1.041;SNPEFF_AMINO_ACID_CHANGE=F9;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31137993_31138470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    0/1:10,5:15:99:127,0,277
6    31138377    rs2077010    C    T    404.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.44;MQ0=0;QD=25.26;SNPEFF_AMINO_ACID_CHANGE=S7;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31137993_31138470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259915    GT:AD:DP:GQ:PL    1/1:0,16:16:33.10:437,33,0
6    31145431    rs3871246    T    C    80.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.07;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441888    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
6    31145451    rs3130506    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441888    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
6    31145702    rs3871247    G    A    162.83    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.111;QD=8.57;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441888    GT:AD:DP:GQ:PL    0/1:10,9:19:99:193,0,357
6    31145755    rs114058818    G    A    41.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=10.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441888    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:71,0,63
6    31145839    rs115229752    T    C    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POU5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441888    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:65,0,28
6    31170528    rs9263871    A    G    2243.32    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.946;DB;DP=170;Dels=0.0;FS=4.582;HRun=2;HaplotypeScore=2.3983;MQ=60.0;MQ0=0;MQRankSum=0.155;QD=13.2;ReadPosRankSum=1.404;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HCG27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383331    GT:AD:DP:GQ:PL    0/1:86,83:170:99:2273,0,2509
6    31170608    rs115974817    C    T    1918.79    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=5.314;DB;DP=145;Dels=0.0;FS=3.283;HRun=0;HaplotypeScore=0.0;MQ=59.84;MQ0=0;MQRankSum=-0.131;QD=13.23;ReadPosRankSum=0.216;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HCG27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383331    GT:AD:DP:GQ:PL    0/1:76,69:145:99:1949,0,2050
6    31170713    rs114945285    T    C    366.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.31;MQ0=0;MQRankSum=0.61;QD=13.56;ReadPosRankSum=-0.952;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HCG27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383331    GT:AD:DP:GQ:PL    0/1:15,12:27:99:396,0,511
6    31236715    rs35877659    GC    G    205.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=59.3227;IndelType=D;MQ=49.17;MQ0=0;QD=29.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:1,6:7:21.06:247,21,0
6    31236722    rs115142437    C    T    155.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.8325;MQ=49.17;MQ0=0;QD=22.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:188,15,0
6    31236853    rs1065711    G    A    1482.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.45;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=T397I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31236526_31236950;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396254    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1516,117,0
6    31236998    rs2001181    C    T    1109.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.0;MQ0=0;QD=24.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:1,44:45:99:1143,102,0
6    31237002    rs17885436    G    C    483.19    MQFilter40    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.332;DB;DP=45;Dels=0.0;FS=2.874;HRun=0;HaplotypeScore=0.0;MQ=38.43;MQ0=0;MQRankSum=-1.0;QD=10.74;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    0/1:19,26:45:99:513,0,379
6    31237014    rs3998381    G    A    804.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.86;MQ0=0;QD=20.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,39:39:75.16:837,75,0
6    31237017    rs2394960    C    T    768.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.96;MQ0=0;QD=20.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,38:38:72.15:802,72,0
6    31237027    rs2394961    C    T    713.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.74;MQ0=0;QD=18.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,39:39:66.15:747,66,0
6    31237048    rs9264594    A    G    934.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.62;MQ0=0;QD=23.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,39:39:84.21:967,84,0
6    31237061    rs114031082    C    T    1181.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.1;MQ0=0;QD=27.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1214,102,0
6    31237087    rs17885557    C    A    312.46    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=39;Dels=0.0;FS=1.385;HRun=0;HaplotypeScore=0.0;MQ=50.81;MQ0=0;MQRankSum=0.462;QD=8.01;ReadPosRankSum=-1.508;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    0/1:25,14:39:99:342,0,680
6    31237124    rs115114271    T    C    1305.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.55;MQ0=0;QD=28.37;SNPEFF_AMINO_ACID_CHANGE=T363A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237115_31237162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1338,108,0
6    31237162    rs116716035    C    G    1152.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=53.2;MQ0=0;QD=30.34;SNPEFF_AMINO_ACID_CHANGE=A349P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237115_31237162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396254    GT:AD:DP:GQ:PL    1/1:0,38:38:96.22:1186,96,0
6    31237230    rs114633440    A    G    1266.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.5;MQ0=0;QD=31.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1300,105,0
6    31237233    rs9264597    A    G    1259.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.5;MQ0=0;QD=31.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1293,105,0
6    31237255    rs2523609    G    A    1459.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.26;MQ0=0;QD=32.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1493,120,0
6    31237323    rs78317777    A    G    1694.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.12;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1727,132,0
6    31237333    rs66772001    T    A    1577.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=53.38;MQ0=0;QD=27.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1610,123,0
6    31237342    rs72558163    G    T    527.06    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.41;DB;DP=52;Dels=0.0;FS=1.134;HRun=0;HaplotypeScore=0.9734;MQ=52.7;MQ0=0;MQRankSum=-1.026;QD=10.14;ReadPosRankSum=-0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    0/1:25,27:52:99:557,0,696
6    31237353    rs67827555    T    C    1158.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.578;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.39;MQ0=0;MQRankSum=0.755;QD=28.96;ReadPosRankSum=0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:2,38:40:62.28:1192,62,0
6    31237405    rs115987759    C    T    833.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.61;MQ0=0;QD=36.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:867,66,0
6    31237437    rs116816228    T    C    442.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:475,42,0
6    31237449    rs79287921    T    C    525.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=35.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:559,42,0
6    31237463    rs115651989    C    G    402.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,13:14:33.11:435,33,0
6    31237526    rs75141084    C    CA    183.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=37.3966;IndelType=I;MQ=55.21;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
6    31237563    rs76531459    C    T    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    31237592    rs115690024    A    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
6    31237605    rs9264607    G    A    88.73    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=0.736;QD=14.79;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    0/1:1,5:6:18.39:119,0,18
6    31237660    rs114481632    A    G    399.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.0;MQ0=0;QD=28.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,14:14:42.05:432,42,0
6    31237664    rs76871874    C    T    449.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.69;MQ0=0;QD=29.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:0,15:15:45.06:483,45,0
6    31237723    rs9264610    G    A    419.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.65;MQ0=1;QD=19.97;SNPEFF_AMINO_ACID_CHANGE=S345;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237714_31237862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396254    GT:AD:DP:GQ:PL    1/1:0,21:21:42.06:452,42,0
6    31237727    rs2074497    T    C    412.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.67;MQ0=1;QD=18.73;SNPEFF_AMINO_ACID_CHANGE=K344R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237714_31237862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396254    GT:AD:DP:GQ:PL    1/1:0,22:22:42.06:445,42,0
6    31237786    rs41556617    A    T    210.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.64;MQ0=0;QD=9.59;SNPEFF_AMINO_ACID_CHANGE=L324;SNPEFF_CODON_CHANGE=ctT/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237743_31237862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,22:22:24.01:244,24,0
6    31237802    rs17413387    A    G    352.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.9;MQ0=0;QD=16.0;SNPEFF_AMINO_ACID_CHANGE=V319A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237743_31237862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,22:22:36.05:385,36,0
6    31237833    rs1050180    T    C    486.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.11;MQ0=0;QD=24.33;SNPEFF_AMINO_ACID_CHANGE=M309V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237743_31237862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,20:20:51.06:520,51,0
6    31237858    rs75148245    T    C    221.92    MQFilter40    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.304;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.0;MQ0=0;MQRankSum=-0.76;QD=10.57;ReadPosRankSum=0.152;SNPEFF_AMINO_ACID_CHANGE=P300;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237743_31237862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:9,11:21:99:252,0,224
6    31237931    rs72558152    CAGA    C    265.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=184.0535;IndelType=D;MQ=29.66;MQ0=0;QD=24.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458701    GT:AD:DP:GQ:PL    1/1:3,8:9:18.06:307,18,0
6    31237991    rs2308628    G    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.61;MQ0=2;QD=5.09;SNPEFF_AMINO_ACID_CHANGE=S297R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,7:7:6.02:67,6,0
6    31238010    rs2308624    T    G    206.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=29.97;MQ0=4;QD=14.76;SNPEFF_AMINO_ACID_CHANGE=Q291P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,14:14:21.06:240,21,0
6    31238029    rs116796675    T    C    500.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.22;MQ0=4;QD=23.86;SNPEFF_AMINO_ACID_CHANGE=M285V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,21:21:42.13:534,42,0
6    31238053    rs707908    G    C    658.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.43;MQ0=4;QD=22.69;SNPEFF_AMINO_ACID_CHANGE=Q277E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,29:29:54.16:691,54,0
6    31238126    rs2308618    G    A    372.78    MQFilter40    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.36;DB;DP=48;Dels=0.0;FS=1.554;HRun=0;HaplotypeScore=0.0;MQ=30.3;MQ0=6;MQRankSum=-1.108;QD=7.77;ReadPosRankSum=1.265;SNPEFF_AMINO_ACID_CHANGE=T252;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:23,25:48:99:403,0,481
6    31238135    rs76717943    G    A    952.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.26;MQ0=7;QD=20.27;SNPEFF_AMINO_ACID_CHANGE=T249;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,47:47:87.23:986,87,0
6    31238138    rs1050320    C    T    947.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.28;MQ0=7;QD=19.73;SNPEFF_AMINO_ACID_CHANGE=Q248;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,48:48:87.22:980,87,0
6    31238147    rs1050326    C    G    391.66    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.361;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.13;MQ0=10;MQRankSum=-0.439;QD=6.99;ReadPosRankSum=-1.076;SNPEFF_AMINO_ACID_CHANGE=G245;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:28,28:56:99:422,0,489
6    31238155    rs1050328    G    A    444.06    MQFilter40    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=3.209;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.55;MQ0=10;MQRankSum=0.139;QD=7.66;ReadPosRankSum=0.203;SNPEFF_AMINO_ACID_CHANGE=R243W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:27,31:58:99:474,0,446
6    31238230    rs17413706    G    C    1976.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=44.37;MQ0=4;QD=27.08;SNPEFF_AMINO_ACID_CHANGE=L218V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2010,165,0
6    31238234    rs79262902    G    A    2058.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=44.17;MQ0=4;QD=27.82;SNPEFF_AMINO_ACID_CHANGE=H216;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2092,165,0
6    31238259    rs76138427    G    T    1951.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=45.78;MQ0=1;QD=28.29;SNPEFF_AMINO_ACID_CHANGE=P208H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31237987_31238262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,67:69:99:1985,159,0
6    31238297    rs114408626    C    T    1315.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.5;MQ0=0;QD=26.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1348,111,0
6    31238308    rs79253434    G    C    795.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.13;MQ0=0;QD=22.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:0,36:36:78.14:828,78,0
6    31238318    rs76860357    G    A    716.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.09;MQ0=0;QD=26.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:0,27:27:63.17:750,63,0
6    31238345    rs75030146    T    C    184.13    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.0;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.17;MQ0=0;MQRankSum=-0.283;QD=8.01;ReadPosRankSum=0.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    0/1:14,9:23:99:214,0,339
6    31238372    rs115694990    C    G    327.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.77;MQ0=0;QD=29.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:360,30,0
6    31238377    rs9264641    G    C    307.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=30.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:341,27,0
6    31238691    rs114710789    C    A    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=5.53;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,150
6    31238728    rs9264651    G    C    183.02    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.57;MQ0=0;MQRankSum=0.067;QD=20.34;ReadPosRankSum=-0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    0/1:2,7:9:57.69:213,0,58
6    31238759    rs76179476    C    T    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.99;MQ0=1;QD=15.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:157,12,0
6    31238762    rs115024771    T    C    123.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.2;MQ0=1;QD=17.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:156,12,0
6    31238814    rs9264653    T    C    578.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DB;DP=26;Dels=0.0;FS=4.559;HRun=0;HaplotypeScore=3.9933;MQ=42.95;MQ0=1;MQRankSum=0.485;QD=22.25;ReadPosRankSum=0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:1,25:26:20.72:611,21,0
6    31238851    rs2308604    T    C    982.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=39.57;MQ0=3;QD=24.56;SNPEFF_AMINO_ACID_CHANGE=A206;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,39:40:87.22:1015,87,0
6    31238875    rs1131104    G    A    239.57    MQFilter40    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.867;DB;DP=42;Dels=0.0;FS=5.787;HRun=0;HaplotypeScore=1.9874;MQ=36.9;MQ0=3;MQRankSum=-1.374;QD=5.7;ReadPosRankSum=-0.508;SNPEFF_AMINO_ACID_CHANGE=N198;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:26,16:42:99:270,0,523
6    31238880    rs1050357    C    T    197.88    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.398;DB;DP=41;Dels=0.0;FS=1.544;HRun=1;HaplotypeScore=0.9958;MQ=36.39;MQ0=3;MQRankSum=-1.511;QD=4.83;ReadPosRankSum=0.62;SNPEFF_AMINO_ACID_CHANGE=E197K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:27,14:41:99:228,0,629
6    31238942    rs2308590    G    T    213.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.27;MQ0=3;QD=8.21;SNPEFF_AMINO_ACID_CHANGE=A176E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,17:26:21.06:246,21,0
6    31238957    rs1050366    A    C    318.74    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.867;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9958;MQ=24.29;MQ0=3;MQRankSum=-0.52;QD=13.28;ReadPosRankSum=0.694;SNPEFF_AMINO_ACID_CHANGE=L171W;SNPEFF_CODON_CHANGE=tTg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:1,23:24:15.28:351,15,0
6    31238963    rs75272234    C    A    81.67    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4888;MQ=26.98;MQ0=3;MQRankSum=-1.268;QD=3.4;ReadPosRankSum=1.981;SNPEFF_AMINO_ACID_CHANGE=R169L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:16,8:24:99:112,0,249
6    31238983    rs2308585    G    C    201.84    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=24;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=32.16;MQ0=3;MQRankSum=1.05;QD=8.41;ReadPosRankSum=-2.064;SNPEFF_AMINO_ACID_CHANGE=T162;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:9,15:24:99:232,0,115
6    31238992    rs41550715    G    C    69.62    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.75;DB;DP=30;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=37.44;MQ0=3;MQRankSum=-2.083;QD=2.32;ReadPosRankSum=2.306;SNPEFF_AMINO_ACID_CHANGE=A159;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:21,9:30:99:100,0,381
6    31239006    rs76907552    G    T    60.59    MQFilter40;QDFilter2    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6712;MQ=39.07;MQ0=2;MQRankSum=-2.772;QD=1.95;ReadPosRankSum=-0.585;SNPEFF_AMINO_ACID_CHANGE=R155S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:22,9:31:90.58:91,0,483
6    31239050    rs111523373    G    T    101.48    HaplotypeScoreFilter13    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=21.3525;MQ=47.93;MQ0=1;MQRankSum=-2.66;QD=2.42;ReadPosRankSum=-1.217;SNPEFF_AMINO_ACID_CHANGE=S140Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:28,8:42:99:131,0,849
6    31239090    rs34592426    G    C    42.30    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.86;DB;DP=36;Dels=0.0;FS=5.714;HRun=0;HaplotypeScore=1.9468;MQ=51.15;MQ0=1;MQRankSum=-1.904;QD=1.17;ReadPosRankSum=1.554;SNPEFF_AMINO_ACID_CHANGE=L127V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:29,7:36:72.29:72,0,868
6    31239101    rs111435219    G    T    979.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9468;MQ=51.23;MQ0=1;QD=28.81;SNPEFF_AMINO_ACID_CHANGE=S123Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,34:34:81.17:1013,81,0
6    31239108    rs1131118    T    A    586.15    SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.155;DB;DP=30;Dels=0.0;FS=5.982;HRun=0;HaplotypeScore=6.8138;MQ=52.13;MQ0=1;MQRankSum=3.135;QD=19.54;ReadPosRankSum=0.118;SNPEFF_AMINO_ACID_CHANGE=R121W;SNPEFF_CODON_CHANGE=Agg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:10,20:30:99:616,0,112
6    31239114    rs115507127    G    T    66.34    SnpCluster    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.08;DB;DP=25;Dels=0.0;FS=9.322;HRun=0;HaplotypeScore=5.8404;MQ=53.08;MQ0=0;MQRankSum=-1.905;QD=2.65;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L119I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:17,7:25:96.33:96,0,596
6    31239116    rs114211043    G    A    66.34    SnpCluster    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=25;Dels=0.0;FS=9.322;HRun=0;HaplotypeScore=5.8404;MQ=53.08;MQ0=0;MQRankSum=-1.604;QD=2.65;ReadPosRankSum=0.272;SNPEFF_AMINO_ACID_CHANGE=T118I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31238850_31239125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:18,7:25:96.33:96,0,587
6    31239141    rs112050508    C    T    260.53    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=13;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.0;MQ=57.1;MQ0=0;MQRankSum=2.637;QD=20.04;ReadPosRankSum=-1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:4,9:13:91.05:291,0,91
6    31239151    rs67420880    A    C    240.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=20.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,12:12:27.01:273,27,0
6    31239205    rs114878632    C    T    120.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=24.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
6    31239227    rs75675929    C    T    135.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=22.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:168,15,0
6    31239270    rs72558142    GATCCA    G    377.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=112.9443;IndelType=D;MQ=29.0;MQ0=0;QD=62.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:420,18,0
6    31239279    rs9264665    T    C    128.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=21.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:161,15,0
6    31239296    rs116373865    G    C    133.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=29.0;MQ0=0;QD=19.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:166,15,0
6    31239306    rs7383157    T    G    62.57    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9648;MQ=35.14;MQ0=0;MQRankSum=-0.742;QD=8.94;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:1,6:7:9.02:95,9,0
6    31239335    rs17880655    G    A    73.47    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.22;MQ0=0;MQRankSum=-0.597;QD=4.32;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:11,6:17:99:103,0,330
6    31239378    rs1131123    T    G    201.08    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.329;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.0;MQ0=1;MQRankSum=-0.141;QD=6.93;ReadPosRankSum=-1.223;SNPEFF_AMINO_ACID_CHANGE=D114A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:17,12:29:99:231,0,514
6    31239407    rs115986584    G    T    561.39    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.06;DB;DP=39;Dels=0.0;FS=1.385;HRun=2;HaplotypeScore=0.9789;MQ=52.78;MQ0=1;MQRankSum=1.463;QD=14.39;ReadPosRankSum=-0.119;SNPEFF_AMINO_ACID_CHANGE=N104K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:16,23:39:99:591,0,382
6    31239417    rs2308557    C    T    539.63    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=42;Dels=0.0;FS=7.544;HRun=1;HaplotypeScore=0.0;MQ=51.19;MQ0=1;MQRankSum=0.821;QD=12.85;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S101N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:19,23:42:99:570,0,452
6    31239430    rs116378030    C    T    449.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=40;Dels=0.0;FS=10.387;HRun=0;HaplotypeScore=0.0;MQ=52.06;MQ0=1;MQRankSum=-1.827;QD=11.24;ReadPosRankSum=0.219;SNPEFF_AMINO_ACID_CHANGE=A134T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239703;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539307    GT:AD:DP:GQ:PL    0/1:20,20:40:99:480,0,562
6    31239506    rs1050414    C    G    556.45    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.786;DB;DP=44;Dels=0.0;FS=6.978;HRun=2;HaplotypeScore=0.0;MQ=52.36;MQ0=0;MQRankSum=1.421;QD=12.65;ReadPosRankSum=1.178;SNPEFF_AMINO_ACID_CHANGE=P108;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539307    GT:AD:DP:GQ:PL    0/1:23,21:44:99:586,0,623
6    31239577    rs77331751;rs78519882    A    C    405.35    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.682;DB;DP=45;Dels=0.0;FS=1.315;HRun=0;HaplotypeScore=2.7789;MQ=50.09;MQ0=1;MQRankSum=-2.982;QD=9.01;ReadPosRankSum=-0.859;SNPEFF_AMINO_ACID_CHANGE=S48A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:19,25:45:99:435,0,581
6    31239585    rs114190902    C    T    398.52    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=39;Dels=0.0;FS=15.713;HRun=0;HaplotypeScore=2.9202;MQ=47.63;MQ0=1;MQRankSum=-3.093;QD=10.22;ReadPosRankSum=-1.204;SNPEFF_AMINO_ACID_CHANGE=R45H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:17,22:39:99:429,0,478
6    31239593    rs116528219    T    C    375.26    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.866;DB;DP=39;Dels=0.0;FS=10.606;HRun=2;HaplotypeScore=0.9734;MQ=48.55;MQ0=1;MQRankSum=-3.358;QD=9.62;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=G42;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:18,21:39:99:405,0,579
6    31239614    rs1050444    G    A    247.44    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=0.759;DB;DP=35;Dels=0.0;FS=10.107;HRun=0;HaplotypeScore=1.9468;MQ=49.56;MQ0=2;MQRankSum=-3.756;QD=7.07;ReadPosRankSum=1.966;SNPEFF_AMINO_ACID_CHANGE=A35;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:22,13:35:99:277,0,624
6    31239622    rs9264668    C    A    229.62    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.809;DB;DP=33;Dels=0.0;FS=10.05;HRun=0;HaplotypeScore=2.8627;MQ=49.7;MQ0=2;MQRankSum=-4.248;QD=6.96;ReadPosRankSum=1.323;SNPEFF_AMINO_ACID_CHANGE=D33Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:17,14:33:99:260,0,484
6    31239681    rs9264669    A    T    282.12    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8002;MQ=54.58;MQ0=1;MQRankSum=0.129;QD=9.1;ReadPosRankSum=-0.43;SNPEFF_AMINO_ACID_CHANGE=V50E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239376_31239703;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539307    GT:AD:DP:GQ:PL    0/1:19,12:31:99:312,0,554
6    31239722    rs9264670    A    C    1169.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.62;MQ0=0;QD=33.42;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000539307    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1203,102,0
6    31239752    rs9264671    C    A    589.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=52.38;MQ0=0;QD=15.52;SNPEFF_AMINO_ACID_CHANGE=A33S;SNPEFF_CODON_CHANGE=Gcg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239723_31239848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539307    GT:AD:DP:GQ:PL    1/1:0,20:38:54.06:623,54,0
6    31239776    rs76699324    A    C    509.89    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.969;DB;DP=39;Dels=0.0;FS=1.399;HRun=1;HaplotypeScore=0.9832;MQ=53.91;MQ0=0;MQRankSum=1.784;QD=13.07;ReadPosRankSum=0.351;SNPEFF_AMINO_ACID_CHANGE=C25G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239776_31239863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:19,20:39:99:540,0,509
6    31239802    rs116108880    C    G    979.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.47;MQ0=0;QD=30.62;SNPEFF_AMINO_ACID_CHANGE=G16A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239776_31239863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,32:32:84.20:1013,84,0
6    31239821    rs114620415    G    T    978.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.23;MQ0=0;QD=27.17;SNPEFF_AMINO_ACID_CHANGE=L10I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239776_31239863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,36:36:78.22:1011,78,0
6    31239827    rs112723279    C    T    915.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.23;MQ0=0;QD=25.43;SNPEFF_AMINO_ACID_CHANGE=A8T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31239776_31239863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    1/1:0,36:36:72.21:948,72,0
6    31239855    rs7767581    C    G    859.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484378    GT:AD:DP:GQ:PL    1/1:0,30:30:69.22:892,69,0
6    31239868    rs75334105    G    C    713.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9899;MQ=52.17;MQ0=0;QD=26.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495835    GT:AD:DP:GQ:PL    1/1:0,27:27:60.16:747,60,0
6    31239869    rs116144359    T    C    165.06    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.246;DB;DP=28;Dels=0.0;FS=1.815;HRun=0;HaplotypeScore=2.9633;MQ=52.47;MQ0=0;MQRankSum=-0.412;QD=5.9;ReadPosRankSum=0.267;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495835    GT:AD:DP:GQ:PL    0/1:13,15:28:99:195,0,431
6    31239896    rs114809222    T    C    256.42    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.42;MQ0=0;MQRankSum=-0.029;QD=10.68;ReadPosRankSum=1.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495835    GT:AD:DP:GQ:PL    0/1:14,10:24:99:286,0,379
6    31239937    rs77291526    C    T    196.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.193;QD=14.02;ReadPosRankSum=-2.007;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376228    GT:AD:DP:GQ:PL    0/1:6,8:14:99:226,0,199
6    31322047    rs1053726    A    G    210.34    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=19;Dels=0.0;FS=11.311;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.858;QD=11.07;ReadPosRankSum=0.619;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:11,8:19:99:240,0,398
6    31322121    rs2428496    C    T    396.73    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.809;DB;DP=22;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=0.9916;MQ=52.17;MQ0=0;MQRankSum=-1.877;QD=18.03;ReadPosRankSum=0.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:8,14:22:99:427,0,203
6    31322174    rs13210793    C    G    117.64    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=-1.396;QD=9.8;ReadPosRankSum=0.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:2,10:12:55.26:148,0,55
6    31322175    rs2428495    C    T    117.64    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.256;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=-2.041;QD=9.8;ReadPosRankSum=0.967;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:2,10:12:57.79:148,0,58
6    31322205    rs151341416    AC    A    318.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.47;DB;DP=16;FS=0.0;HRun=4;HaplotypeScore=288.4297;IndelType=D;MQ=34.44;MQ0=0;MQRankSum=-1.737;QD=19.92;ReadPosRankSum=1.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:4,12:16:4.46:357,0,4
6    31322214    rs151341412    CAGA    C    437.45    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.1;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=270.3638;IndelType=D;MQ=34.77;MQ0=0;MQRankSum=-2.282;QD=29.16;ReadPosRankSum=1.552;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:2,11:15:97.50:476,0,98
6    31322221    rs151341403    GCCACCCCA    G    750.26    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.583;DB;DP=19;FS=2.667;HRun=0;HaplotypeScore=327.9741;IndelType=D;MQ=37.71;MQ0=0;MQRankSum=-2.457;QD=39.49;ReadPosRankSum=1.701;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:9,10:19:99:789,0,347
6    31322470    rs2442717    C    G    1077.65    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=63;Dels=0.0;FS=5.721;HRun=3;HaplotypeScore=2.8986;MQ=59.19;MQ0=0;MQRankSum=0.513;QD=17.11;ReadPosRankSum=1.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:25,38:63:99:1108,0,659
6    31322762    rs13214791    G    T    333.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.435;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.202;QD=13.89;ReadPosRankSum=-1.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:12,12:24:99:363,0,429
6    31322888    rs1140546    A    G    1368.06    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.835;DB;DP=97;Dels=0.0;FS=1.695;HRun=0;HaplotypeScore=0.9665;MQ=57.93;MQ0=0;MQRankSum=1.274;QD=14.1;ReadPosRankSum=-0.712;SNPEFF_AMINO_ACID_CHANGE=S215;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31322884_31323000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428231    GT:AD:DP:GQ:PL    0/1:46,51:97:99:1398,0,1314
6    31322996    rs2074496    C    T    465.28    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=3.767;DB;DP=42;Dels=0.0;FS=7.362;HRun=0;HaplotypeScore=0.8941;MQ=53.76;MQ0=0;MQRankSum=-0.871;QD=11.08;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=P179;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31322884_31323000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428231    GT:AD:DP:GQ:PL    0/1:25,17:42:99:495,0,732
6    31323039    rs70990234    T    TGAAGGGCTCCA    2926.96    PASS    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=47;FS=6.483;HRun=0;HaplotypeScore=505.8158;IndelType=I;MQ=44.32;MQ0=0;MQRankSum=-5.307;QD=60.98;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:41,7:47:99:2966,0,1589
6    31323296    rs1050747    A    G    2224.02    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.591;DB;DP=148;Dels=0.0;FS=1.41;HRun=0;HaplotypeScore=2.4849;MQ=53.24;MQ0=5;MQRankSum=-3.431;QD=15.03;ReadPosRankSum=-0.641;SNPEFF_AMINO_ACID_CHANGE=G110;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323094_31323369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428231    GT:AD:DP:GQ:PL    0/1:62,86:148:99:2254,0,1899
6    31323409    rs2523605    T    C    1047.91    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.427;DB;DP=92;Dels=0.0;FS=2.296;HRun=0;HaplotypeScore=11.3944;MQ=57.51;MQ0=0;MQRankSum=-2.223;QD=11.39;ReadPosRankSum=0.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:51,41:92:99:1078,0,1617
6    31323945    rs2596493    A    C    31.80    QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=44;Dels=0.0;FS=4.585;HRun=2;HaplotypeScore=1.7273;MQ=51.76;MQ0=0;MQRankSum=-3.263;QD=0.72;ReadPosRankSum=0.133;SNPEFF_AMINO_ACID_CHANGE=A206;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:34,10:44:61.79:62,0,919
6    31324024    rs697742    C    A    1083.13    PASS    AB=0.186;AC=1;AF=0.50;AN=2;BaseQRankSum=1.527;DB;DP=59;Dels=0.0;FS=8.102;HRun=0;HaplotypeScore=3.0766;MQ=43.54;MQ0=1;MQRankSum=0.02;QD=18.36;ReadPosRankSum=1.031;SNPEFF_AMINO_ACID_CHANGE=R180L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:11,48:59:99:1113,0,247
6    31324025    rs9266144    G    A    178.54    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=59;Dels=0.0;FS=12.025;HRun=0;HaplotypeScore=3.0766;MQ=43.0;MQ0=1;MQRankSum=0.617;QD=3.03;ReadPosRankSum=-0.9;SNPEFF_AMINO_ACID_CHANGE=R180W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:48,11:59:99:209,0,1047
6    31324036    rs151341294;rs151341295    T    A    566.53    MQFilter40    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.37;DB;DP=57;Dels=0.0;FS=6.235;HRun=0;HaplotypeScore=2.1101;MQ=39.92;MQ0=1;MQRankSum=1.419;QD=9.94;ReadPosRankSum=-0.121;SNPEFF_AMINO_ACID_CHANGE=E176V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:29,28:57:99:597,0,733
6    31324051    rs41551018    C    A    216.86    MQFilter40    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.996;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.4565;MQ=37.0;MQ0=1;MQRankSum=-1.426;QD=3.5;ReadPosRankSum=-0.374;SNPEFF_AMINO_ACID_CHANGE=W171L;SNPEFF_CODON_CHANGE=tGg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:44,17:62:99:247,0,975
6    31324057    rs12697943    C    A    41.59    MQFilter40;QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=1.052;DB;DP=63;Dels=0.0;FS=3.672;HRun=0;HaplotypeScore=9.857;MQ=37.47;MQ0=1;MQRankSum=-0.236;QD=0.66;ReadPosRankSum=-0.945;SNPEFF_AMINO_ACID_CHANGE=R169L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:53,10:63:71.58:72,0,1162
6    31324064    rs151341273    T    A    287.91    MQFilter40    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=1.889;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.8573;MQ=37.99;MQ0=0;MQRankSum=-0.909;QD=4.8;ReadPosRankSum=-1.675;SNPEFF_AMINO_ACID_CHANGE=T167S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:41,18:60:99:318,0,949
6    31324104    rs80285803    G    A    265.52    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=60;Dels=0.0;FS=1.201;HRun=0;HaplotypeScore=9.5185;MQ=39.86;MQ0=1;MQRankSum=-1.468;QD=4.43;ReadPosRankSum=0.455;SNPEFF_AMINO_ACID_CHANGE=D153;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:40,20:60:99:296,0,1119
6    31324151    rs709055    C    T    685.38    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.182;DB;DP=42;Dels=0.0;FS=6.958;HRun=1;HaplotypeScore=10.2578;MQ=47.25;MQ0=1;MQRankSum=2.569;QD=16.32;ReadPosRankSum=1.309;SNPEFF_AMINO_ACID_CHANGE=D138N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:12,28:42:89.04:715,0,89
6    31324154    rs1050379    G    A    36.41    QDFilter2    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.517;DB;DP=41;Dels=0.0;FS=8.913;HRun=0;HaplotypeScore=6.3418;MQ=46.89;MQ0=1;MQRankSum=-2.617;QD=0.89;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=H137Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:30,11:41:66.41:66,0,779
6    31324200    rs1140412    G    C    578.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.8404;MQ=46.03;MQ0=1;QD=24.1;SNPEFF_AMINO_ACID_CHANGE=S121R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31323944_31324219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:0,24:24:48.13:611,48,0
6    31324415    rs2507989    A    C    67.64    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=13;Dels=0.0;FS=10.925;HRun=1;HaplotypeScore=0.8667;MQ=43.61;MQ0=0;MQRankSum=-2.237;QD=5.2;ReadPosRankSum=2.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:9,4:13:97.63:98,0,260
6    31324516    rs1131215    C    A    56.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.92;MQ0=1;QD=4.71;SNPEFF_AMINO_ACID_CHANGE=D109Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    1/1:1,11:12:9:89,9,0
6    31324547    rs151341177;rs151341178;rs151341179    G    C    38.97    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.05;MQ0=0;QD=2.78;SNPEFF_AMINO_ACID_CHANGE=N87K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:0,14:14:8.96:71,9,0
6    31324549    rs143633217    T    C    44.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.05;MQ0=0;QD=3.2;SNPEFF_AMINO_ACID_CHANGE=N87D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:0,14:14:8.97:77,9,0
6    31324586    rs151341143;rs151341144;rs151341145    C    T    103.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.47;MQ0=0;QD=6.88;SNPEFF_AMINO_ACID_CHANGE=P74;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:0,15:15:14.98:136,15,0
6    31324615    rs1050529    C    T    77.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.91;MQ0=0;QD=9.71;SNPEFF_AMINO_ACID_CHANGE=A65T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:0,8:8:11.98:110,12,0
6    31324664    rs9266184    T    G    124.16    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.26;MQ0=1;MQRankSum=0.696;QD=11.29;ReadPosRankSum=1.393;SNPEFF_AMINO_ACID_CHANGE=S48;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:2,9:11:2.26:154,2,0
6    31324666    rs713031    A    T    142.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.26;MQ0=1;QD=12.95;SNPEFF_AMINO_ACID_CHANGE=S48T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:0,9:11:20.94:175,21,0
6    31324702    rs1050486    C    T    152.85    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.59;MQ0=1;MQRankSum=-0.158;QD=12.74;ReadPosRankSum=-1.739;SNPEFF_AMINO_ACID_CHANGE=V36M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:2,10:12:2.30:182,2,0
6    31324705    rs1131170    A    C    169    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.59;MQ0=1;QD=14.08;SNPEFF_AMINO_ACID_CHANGE=S35A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:0,12:12:21:202,21,0
6    31324742    rs151341083    T    C    224.41    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9203;MQ=32.41;MQ0=0;QD=20.4;SNPEFF_AMINO_ACID_CHANGE=S33;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    1/1:0,11:11:26.96:257,27,0
6    31324743    rs41563412    G    C    78.90    MQFilter40;SnpCluster    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=1.9203;MQ=32.41;MQ0=0;MQRankSum=-0.678;QD=7.17;ReadPosRankSum=0.896;SNPEFF_AMINO_ACID_CHANGE=S33*;SNPEFF_CODON_CHANGE=tCa/tGa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:4,7:11:90.88:109,0,91
6    31324750    rs41558815    G    A    52.60    MQFilter40;SnpCluster    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.9734;MQ=32.41;MQ0=0;MQRankSum=1.531;QD=4.78;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=P31S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:8,3:11:82.59:83,0,143
6    31324764    rs41560522    C    A    52.09    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.95;MQ0=0;MQRankSum=-0.851;QD=5.21;ReadPosRankSum=0.676;SNPEFF_AMINO_ACID_CHANGE=R26L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    0/1:5,5:10:82.09:82,0,138
6    31324788    rs9266193    T    C    340.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.87;MQ0=0;QD=28.4;SNPEFF_AMINO_ACID_CHANGE=E18G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    1/1:0,12:12:35.99:374,36,0
6    31324790    rs9266194    A    G    251.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.87;MQ0=0;QD=20.93;SNPEFF_AMINO_ACID_CHANGE=P17;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    1/1:0,12:12:29.98:284,30,0
6    31324829    rs9266196    G    C    324.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=43.62;MQ0=0;QD=24.95;SNPEFF_AMINO_ACID_CHANGE=A4;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    1/1:0,13:13:36.03:357,36,0
6    31324830    rs9266197    G    A    334.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.62;MQ0=0;QD=25.72;SNPEFF_AMINO_ACID_CHANGE=A4V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324465_31324965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434333    GT:AD:DP:GQ:PL    1/1:0,13:13:36.03:367,36,0
6    31324847    rs9266198    C    G    197.85    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.761;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.62;MQ0=0;MQRankSum=1.099;QD=15.22;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:3,10:13:36.86:228,0,37
6    31324921    rs1050459    C    T    177.93    SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=40.17;MQ0=0;MQRankSum=0.551;QD=11.86;ReadPosRankSum=-0.674;SNPEFF_AMINO_ACID_CHANGE=A5;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324863_31324964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    0/1:5,10:15:51.14:208,0,51
6    31324925    rs1050458    A    G    245.41    SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.81;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=40.17;MQ0=0;MQRankSum=0.81;QD=16.36;ReadPosRankSum=-0.347;SNPEFF_AMINO_ACID_CHANGE=M4T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324863_31324964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:1,14:15:8.32:277,8,0
6    31324931    rs151341075    A    C    235.76    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7621;MQ=40.86;MQ0=0;QD=16.84;SNPEFF_AMINO_ACID_CHANGE=L2R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31324863_31324964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412585    GT:AD:DP:GQ:PL    1/1:0,14:14:26.99:269,27,0
6    31324953    rs9266207    C    T    290.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.05;MQ0=0;QD=24.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498007    GT:AD:DP:GQ:PL    1/1:0,11:12:27.03:323,27,0
6    31380341    rs116039423    A    G    299.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468458    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
6    31382717    rs2853975    A    T    1258.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.27;DB;DP=110;Dels=0.0;FS=8.631;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.043;QD=11.44;ReadPosRankSum=1.487;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468458    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1289,0,1793
6    31465915    rs3828916    G    C    81.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538442    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
6    31473247    rs115935870    C    T    114.05    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=7.13;ReadPosRankSum=-2.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252229    GT:AD:DP:GQ:PL    0/1:9,7:16:99:144,0,328
6    31473286    rs3134899    C    T    1205.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252229    GT:AD:DP:GQ:PL    1/1:0,32:32:93.31:1239,93,0
6    31473546    rs3131639    A    G    1856.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=N43D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31473394_31473648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538442    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1890,147,0
6    31473561    rs1065075    A    G    913.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.487;DB;DP=52;Dels=0.0;FS=1.131;HRun=0;HaplotypeScore=0.9999;MQ=59.64;MQ0=0;MQRankSum=-1.092;QD=17.56;ReadPosRankSum=1.331;SNPEFF_AMINO_ACID_CHANGE=K48E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31473394_31473648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538442    GT:AD:DP:GQ:PL    0/1:24,28:52:99:943,0,685
6    31473844    rs2286713    T    C    659.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.87;MQ0=0;QD=31.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252229    GT:AD:DP:GQ:PL    1/1:0,21:21:54.14:692,54,0
6    31474000    rs1051788    G    A    926.42    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.649;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.87;MQ0=0;MQRankSum=-0.555;QD=10.41;ReadPosRankSum=-0.757;SNPEFF_AMINO_ACID_CHANGE=D104N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31473920_31474207;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538442    GT:AD:DP:GQ:PL    0/1:54,35:89:99:956,0,1528
6    31474688    rs3093953    T    G    625.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252229    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:658,51,0
6    31475056    rs41273040    G    A    503.74    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=39;Dels=0.0;FS=1.237;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.147;QD=12.92;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=G248S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31474799_31475077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399150    GT:AD:DP:GQ:PL    0/1:22,17:39:99:534,0,738
6    31475127    rs3131638    A    G    1402.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252229    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1435,114,0
6    31475413    rs3130615    G    A    510.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494577    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:543,42,0
6    31475486    rs3132468    C    T    200.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494577    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:233,18,0
6    31477461    rs3132464    C    T    2221.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.643;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.664;MQ=60.0;MQ0=0;MQRankSum=-0.99;QD=31.74;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494577    GT:AD:DP:GQ:PL    1/1:1,69:70:99:2255,157,0
6    31477681    rs1065076    A    G    2138.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8804;MQ=59.87;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=T340A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31477559_31478901;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399150    GT:AD:DP:GQ:PL    1/1:0,67:68:99:2171,166,0
6    31477767    rs35833207    CAG    C    988.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=114.8487;IndelType=D;MQ=57.9;MQ0=1;QD=36.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494577    GT:AD:DP:GQ:PL    1/1:2,25:26:72.24:1031,72,0
6    31496776    rs3130054    T    G    1197.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=59.49;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376185    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1231,102,0
6    31496925    rs3093983    G    A    1320.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=S45N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31496494_31496962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376191    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1353,105,0
6    31497457    rs3093981    A    G    89.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376185    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:122,12,0
6    31497478    rs115689124    A    G    181.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376185    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:215,18,0
6    31497706    rs2075582    C    T    86.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=G118;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31497524_31498009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCCD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376191    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    31498497    rs115329117    C    A    863.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-1.255;QD=29.78;ReadPosRankSum=0.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419338    GT:AD:DP:GQ:PL    1/1:1,28:29:66.20:897,66,0
6    31499354    rs116506945    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419338    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    31502164    rs34131879    AG    A    1254.91    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=5.067;DB;DP=76;FS=3.858;HRun=2;HaplotypeScore=199.1844;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=0.336;QD=16.51;ReadPosRankSum=1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418897    GT:AD:DP:GQ:PL    0/1:36,40:76:99:1294,0,1323
6    31503975    rs2075580    G    C    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480131    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
6    31504546    rs10456396    C    A    266.67    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=19.05;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480131    GT:AD:DP:GQ:PL    0/1:4,10:14:99:297,0,124
6    31504587    rs115160751    G    T    125.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480131    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:158,12,0
6    31506624    rs1129640    T    C    1827.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.23;SNPEFF_AMINO_ACID_CHANGE=V116;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31506540_31506632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX39B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376177    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1860,138,0
6    31506648    rs933208    G    T    1823.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.15;SNPEFF_AMINO_ACID_CHANGE=V136;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31506540_31506716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX39B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428450    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1856,141,0
6    31506691    rs2071596    G    A    555.26    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=43;Dels=0.0;FS=2.619;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.548;QD=12.91;ReadPosRankSum=1.984;SNPEFF_AMINO_ACID_CHANGE=P122L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31506659_31506716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX39B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419020    GT:AD:DP:GQ:PL    0/1:23,20:43:99:585,0,739
6    31506744    rs2516393    A    C    2034.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=36.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2068,153,0
6    31506854    rs116642576    C    T    4967.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.53;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    1/1:0,148:148:99:4967,379,0
6    31507160    rs146591430    A    G    377.75    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.986;QD=20.99;ReadPosRankSum=0.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    0/1:5,13:18:99:408,0,160
6    31507883    rs2523510    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    31507938    rs115054796    G    A    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:69,0,29
6    31508761    rs2523508    C    T    2947.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2981,217,0
6    31509284    rs3130059    G    C    103.63    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=14.8;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    0/1:2,5:7:63.16:134,0,63
6    31509355    rs2523507    G    A    369.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:402,30,0
6    31509372    rs114403156    G    A    446.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:480,36,0
6    31509432    rs116634007    G    A    877.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_AMINO_ACID_CHANGE=R16C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31509411_31509506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX39B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449757    GT:AD:DP:GQ:PL    1/1:0,29:29:69.22:911,69,0
6    31513402    rs2239705    G    A    95.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=6.34;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481998    GT:AD:DP:GQ:PL    0/1:10,5:15:99:125,0,307
6    31513864    rs2523502    A    T    1351.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1G2-DDX39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475917    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1385,102,0
6    31515799    rs2071591    G    A    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415099    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,70
6    31525184    rs3093949    C    T    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376145    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    31525319    rs2239707    C    T    674.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376145    GT:AD:DP:GQ:PL    1/1:0,19:19:57.15:707,57,0
6    31525912    rs3130062    C    T    351.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_AMINO_ACID_CHANGE=R201C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31525799_31526606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376146    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:384,30,0
6    31540429    rs746868    C    G    146.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.068;QD=10.47;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418386    GT:AD:DP:GQ:PL    0/1:7,7:14:99:177,0,202
6    31540784    rs1041981    C    A    237.85    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;Dels=0.0;FS=4.32;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.755;QD=11.89;ReadPosRankSum=0.367;SNPEFF_AMINO_ACID_CHANGE=T60N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31540705_31540810;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418386    GT:AD:DP:GQ:PL    0/1:11,9:20:99:268,0,324
6    31540957    rs4647195    T    C    77.31    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.66;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418386    GT:AD:DP:GQ:PL    0/1:3,5:8:99:107,0,101
6    31544642    rs3093664    A    G    997.05    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=67;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9468;MQ=59.66;MQ0=0;MQRankSum=1.249;QD=14.88;ReadPosRankSum=0.973;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418386    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1027,0,1002
6    31555130    rs2256965    A    G    304.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.068;DB;DP=24;Dels=0.0;FS=10.02;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.068;QD=12.68;ReadPosRankSum=-0.433;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340027    GT:AD:DP:GQ:PL    0/1:12,12:24:99:334,0,396
6    31555392    rs2256974    C    A    147.76    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.63;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340027    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:178,0,25
6    31560565    rs11575838    C    T    332.50    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.803;QD=17.5;ReadPosRankSum=-1.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211921    GT:AD:DP:GQ:PL    0/1:7,12:19:99:362,0,197
6    31590354    rs3130068    G    A    162.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376007    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
6    31591808    rs114767863    A    G    264.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376007    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:297,21,0
6    31591918    rs2260051    A    T    1017.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376007    GT:AD:DP:GQ:PL    1/1:0,29:29:84.26:1050,84,0
6    31594628    rs114193282    T    A    388.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=G354;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31594549_31594639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376007    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:421,33,0
6    31595882    rs1046080    C    A    3793.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.38;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=T533K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31595542_31596016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435052    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3794,283,0
6    31597700    rs3130623    C    T    1164.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464079    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1198,87,0
6    31597753    rs116539088    G    A    509.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464079    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:542,39,0
6    31597875    rs3130624    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464079    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    31598489    rs3130626    A    G    1295.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.403;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=29.44;ReadPosRankSum=1.238;SNPEFF_AMINO_ACID_CHANGE=V17;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31598360_31598578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376010    GT:AD:DP:GQ:PL    1/1:1,42:43:62.70:1328,63,0
6    31600106    rs41273264    C    A    259.34    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.699;DB;DP=26;Dels=0.0;FS=9.853;HRun=0;HaplotypeScore=3.6794;MQ=59.11;MQ0=0;MQRankSum=-0.571;QD=9.97;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=S1202Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31599982_31600769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435052    GT:AD:DP:GQ:PL    0/1:15,11:26:99:289,0,529
6    31600820    rs115919788    A    G    98.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483470    GT:AD:DP:GQ:PL    1/1:0,7:7:12.03:131,12,0
6    31600851    rs3130627    G    T    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483470    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
6    31601012    rs2844466    T    C    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483470    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
6    31601022    rs2844465    T    C    169.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483470    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
6    31601344    rs2272593    T    C    1003.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.39;MQ0=0;QD=27.87;SNPEFF_AMINO_ACID_CHANGE=L1486P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31601156_31601424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435052    GT:AD:DP:GQ:PL    1/1:0,36:36:84.24:1036,84,0
6    31601513    rs2242659    A    G    406.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483470    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:440,36,0
6    31601843    rs116584375    T    C    3558.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.308;DB;DP=107;Dels=0.0;FS=5.482;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.441;QD=33.25;ReadPosRankSum=-1.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211379    GT:AD:DP:GQ:PL    1/1:1,106:107:99:3558,241,0
6    31602967    rs114829969    G    A    1118.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DB;DP=35;Dels=0.0;FS=5.315;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.714;QD=31.95;ReadPosRankSum=0.408;SNPEFF_AMINO_ACID_CHANGE=R1723H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31602909_31603049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435052    GT:AD:DP:GQ:PL    1/1:1,33:35:55.48:1151,55,0
6    31603770    rs115684164    A    G    645.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=I1839V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31603758_31603790;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435052    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:679,51,0
6    31604044    rs3132453    T    G    4353.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=59.09;MQ0=0;QD=30.44;SNPEFF_AMINO_ACID_CHANGE=L1120V;SNPEFF_CODON_CHANGE=Tta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31603986_31604196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376010    GT:AD:DP:GQ:PL    1/1:0,143:143:99:4353,346,0
6    31604591    rs10885    C    T    3966.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.03;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=P1231S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31604510_31604722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376010    GT:AD:DP:GQ:PL    1/1:0,120:120:99:3966,319,0
6    31606901    rs5875328    C    CAAAG    530.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=23.4539;IndelType=I;MQ=62.65;MQ0=0;QD=66.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436214    GT:AD:DP:GQ:PL    1/1:0,7:8:24.08:572,24,0
6    31607050    rs750332    C    T    238.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436214    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
6    31607096    rs5875329    T    TC    552.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=19;FS=0.0;HRun=8;HaplotypeScore=71.4957;IndelType=I;MQ=60.16;MQ0=0;MQRankSum=1.552;QD=29.09;ReadPosRankSum=-0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435080    GT:AD:DP:GQ:PL    1/1:2,17:19:29.71:595,30,0
6    31607942    rs9267525    T    C    872.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435080    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:906,66,0
6    31609272    rs3130628    T    C    3809.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435080    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3809,292,0
6    31610479    rs3130047    C    T    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424176    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
6    31611777    rs115159617    T    C    853.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.07;MQ0=0;QD=34.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424176    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:887,66,0
6    31613991    rs2844464    A    G    58.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424176    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:91,9,0
6    31614102    rs114827751    C    T    771.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424176    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:804,60,0
6    31615167    rs2844463    G    A    46.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424176    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:77,6,0
6    31616366    rs805303    G    A    2492.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454165    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2526,193,0
6    31619315    rs71749257    CAAAAAAAAGA    C    680.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=100.5526;IndelType=D;MQ=46.84;MQ0=0;QD=75.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211379    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:723,27,0
6    31619576    rs3117583    A    G    1338.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211379    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1371,108,0
6    31627523    rs3130617    C    T    1658.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=G68R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31626075_31628549;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375911    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1691,129,0
6    31629953    rs7029    A    G    489.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375916    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:522,42,0
6    31630241    rs116054127    C    T    1241.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=R291;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31629853_31630487;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375893    GT:AD:DP:GQ:PL    1/1:0,36:36:93.31:1274,93,0
6    31632134    rs115609040    C    A    1331.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.693;QD=32.48;ReadPosRankSum=-0.433;SNPEFF_AMINO_ACID_CHANGE=R41L;SNPEFF_CODON_CHANGE=cGa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31631630_31632357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375893    GT:AD:DP:GQ:PL    1/1:1,40:41:74.75:1365,75,0
6    31634570    rs9267529    A    C    319.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375865    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
6    31634758    rs3132448    G    A    472.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375865    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:506,39,0
6    31637807    rs4569    C    T    297.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465481    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:330,24,0
6    31639129    rs2142234    G    A    2011.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=37.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375865    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2045,153,0
6    31639979    rs114641281    C    T    1507.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=R121C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31639641_31640239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6G5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409525    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1540,114,0
6    31644640    rs13295    A    G    406.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DB;DP=16;Dels=0.0;FS=9.031;HRun=0;HaplotypeScore=1.7884;MQ=58.83;MQ0=0;MQRankSum=1.519;QD=25.38;ReadPosRankSum=0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375880    GT:AD:DP:GQ:PL    1/1:1,15:16:5.09:437,5,0
6    31646683    rs3131376    A    G    602.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6G5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461572    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:636,48,0
6    31646746    rs34218321    C    CA    754.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.743;DB;DP=35;FS=0.0;HRun=11;HaplotypeScore=262.8765;IndelType=I;MQ=57.31;MQ0=0;MQRankSum=0.248;QD=21.56;ReadPosRankSum=0.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6G5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461572    GT:AD:DP:GQ:PL    1/1:8,26:35:60.93:797,61,0
6    31646766    rs115264364    T    C    1503.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.7;MQ0=0;QD=29.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6G5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461572    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1536,120,0
6    31649149    rs9267535    C    G    220.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6G5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375860    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:253,21,0
6    31655438    rs10573    G    A    1385.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=P290;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31655419_31655517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD16A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375842    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1418,108,0
6    31657413    rs1475865    T    C    450.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.63;SNPEFF_AMINO_ACID_CHANGE=L123;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31657358_31657481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD16A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375842    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:483,36,0
6    31657754    rs115875968    C    G    338.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468037    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
6    31659731    rs116428739    T    G    245.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468037    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:279,21,0
6    31668548    rs9267543    T    A    155.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375842    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:188,15,0
6    31668555    rs59783939    TC    T    251.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=38.7555;IndelType=D;MQ=61.53;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375842    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:294,21,0
6    31669149    rs3830950    TAC    T    214.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=48.4395;IndelType=D;MQ=58.33;MQ0=0;QD=15.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375842    GT:AD:DP:GQ:PL    1/1:9,5:14:21.06:257,21,0
6    31675501    rs9267547    G    A    649.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=A107T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31675235_31675564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6G6F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375832    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:682,51,0
6    31675985    rs9267548    C    T    610.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL662899.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383418    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:644,48,0
6    31678028    rs805288    C    T    1741.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.11;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL662899.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383418    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1775,135,0
6    31685654    rs3131384    G    C    495.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6G6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375819    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:528,39,0
6    31687008    rs1065356    G    A    1609.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.2;SNPEFF_AMINO_ACID_CHANGE=R25;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31686425_31687087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6G6C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000495859    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1643,123,0
6    31691657    rs453098    G    A    1146.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.225;DB;DP=43;Dels=0.0;FS=4.15;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=26.67;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=G101;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31691416_31691763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C6orf25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375804    GT:AD:DP:GQ:PL    1/1:1,42:43:57.53:1180,58,0
6    31692163    rs805306    A    G    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C6orf25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466312    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
6    31710968    rs707915    T    A    2136.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.445;DB;DP=71;Dels=0.0;FS=5.663;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.049;QD=30.09;ReadPosRankSum=-1.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375703    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2170,124,0
6    31729359    rs707938    A    G    935.75    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=90;Dels=0.0;FS=8.776;HRun=0;HaplotypeScore=3.5979;MQ=59.49;MQ0=0;MQRankSum=0.504;QD=10.4;ReadPosRankSum=-0.495;SNPEFF_AMINO_ACID_CHANGE=Q102;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31729249_31729392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MSH5-C6orf26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000491552    GT:AD:DP:GQ:PL    0/1:53,37:90:99:966,0,1598
6    31733650    rs707936    G    A    1661.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=53.94;MQ0=0;MQRankSum=1.176;QD=29.67;ReadPosRankSum=-0.681;SNPEFF_AMINO_ACID_CHANGE=H837Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31733632_31733834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375686    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1695,108,0
6    31734890    rs115710614    T    A    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415669    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
6    31735631    rs115233458    C    T    409.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415669    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:442,33,0
6    31742242    rs6914412    T    C    286.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.457;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.776;QD=14.34;ReadPosRankSum=0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497645    GT:AD:DP:GQ:PL    0/1:10,10:20:99:317,0,299
6    31745284    rs114593439    C    T    34.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=1.231;QD=6.9;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375663    GT:AD:DP:GQ:PL    0/1:3,2:5:64.51:65,0,101
6    31748820    rs115585784    G    A    631.31    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=1.162;DB;DP=31;Dels=0.0;FS=3.431;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.506;QD=20.36;ReadPosRankSum=0.129;SNPEFF_AMINO_ACID_CHANGE=D875;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31748796_31748900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375663    GT:AD:DP:GQ:PL    0/1:12,19:31:99:661,0,308
6    31749804    rs743399    C    T    463.95    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.276;DB;DP=40;Dels=0.0;FS=1.341;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.812;QD=11.6;ReadPosRankSum=-0.525;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461328    GT:AD:DP:GQ:PL    0/1:22,18:40:99:494,0,667
6    31773821    rs115103462    C    T    330.80    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=24;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=13.78;ReadPosRankSum=1.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375653    GT:AD:DP:GQ:PL    0/1:13,11:24:99:361,0,356
6    31777770    rs34324979    AG    A    491.74    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=4.243;DB;DP=28;FS=4.379;HRun=4;HaplotypeScore=76.665;IndelType=D;MQ=59.56;MQ0=0;MQRankSum=-0.276;QD=17.56;ReadPosRankSum=-2.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375653    GT:AD:DP:GQ:PL    0/1:11,17:28:99:531,0,339
6    31778272    rs2227956    G    A    2883.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.69;MQ0=0;QD=38.45;SNPEFF_AMINO_ACID_CHANGE=T438M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31777824_31779290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375653    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2917,220,0
6    31778529    rs2075799    C    T    826.49    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.385;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.537;QD=12.34;ReadPosRankSum=0.35;SNPEFF_AMINO_ACID_CHANGE=T352;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31777824_31779290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375653    GT:AD:DP:GQ:PL    0/1:36,31:67:99:856,0,946
6    31783507    rs1043618    G    C    1135.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.36;MQ0=0;QD=30.69;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375653    GT:AD:DP:GQ:PL    1/1:0,37:37:93.27:1169,93,0
6    31783755    rs1043620    T    C    129.02    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.62;MQ0=77;QD=1.57;SNPEFF_AMINO_ACID_CHANGE=I74;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31783291_31785717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375651    GT:AD:DP:GQ:PL    1/1:0,82:82:15.03:162,15,0
6    31785228    rs506770    G    C    791.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.52;MQ0=1;QD=23.28;SNPEFF_AMINO_ACID_CHANGE=A400;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31784104_31785723;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375652    GT:AD:DP:GQ:PL    1/1:1,33:34:81.08:824,81,0
6    31795561    rs11576013    G    C    118.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.55;QD=16.88;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=S12;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31795512_31795714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542758    GT:AD:DP:GQ:PL    0/1:3,4:7:61.96:148,0,62
6    31795949    rs140434649    T    C    92.44    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.49;MQ0=73;QD=1.2;SNPEFF_AMINO_ACID_CHANGE=I141;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31795716_31798031;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542758    GT:AD:DP:GQ:PL    1/1:0,77:77:12.02:125,12,0
6    31803063    rs66527636    CT    C    2129.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=2;HaplotypeScore=317.8062;IndelType=D;MQ=59.18;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375635    GT:AD:DP:GQ:PL    1/1:1,57:58:99:2172,169,0
6    31803074    rs17201241    C    T    804.85    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.435;DB;DP=64;Dels=0.0;FS=5.958;HRun=1;HaplotypeScore=0.6651;MQ=58.72;MQ0=0;MQRankSum=0.906;QD=12.58;ReadPosRankSum=0.863;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_31803065_31803228;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf48;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375633    GT:AD:DP:GQ:PL    0/1:37,27:64:99:835,0,1076
6    31803130    rs117222949    C    T    1183.94    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.84;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=-1.484;QD=14.26;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375635    GT:AD:DP:GQ:PL    0/1:39,44:83:99:1214,0,1144
6    31803323    rs35137048    CT    C    51.87    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.713;DB;DP=40;FS=0.0;HRun=20;HaplotypeScore=457.6926;IndelType=D;MQ=44.66;MQ0=0;MQRankSum=0.0;QD=1.3;ReadPosRankSum=2.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375633    GT:AD:DP:GQ:PL    1/1:19,9:40:23.05:94,23,0
6    31804729    rs11968400    C    T    105.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=9.56;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375633    GT:AD:DP:GQ:PL    0/1:6,5:11:99:135,0,210
6    31830593    rs41267082    A    C    359.49    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.793;QD=19.97;ReadPosRankSum=1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229729    GT:AD:DP:GQ:PL    0/1:7,11:18:99:389,0,150
6    31836827    rs521977    T    G    154.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475563    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:187,15,0
6    31837066    rs11966200    C    T    158.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.89;QD=8.81;ReadPosRankSum=0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475563    GT:AD:DP:GQ:PL    0/1:12,6:18:99:189,0,397
6    31837250    rs660594    G    A    537.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475563    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:570,45,0
6    31837277    rs145718831    C    A    682.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475563    GT:AD:DP:GQ:PL    1/1:0,23:23:60.15:716,60,0
6    31837491    rs571338    A    G    83.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465707    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
6    31838441    rs644827    T    C    559.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=M250V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31838380_31838479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544672    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:593,45,0
6    31838490    rs644774    C    T    601.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462671    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:635,48,0
6    31838545    rs493515    G    A    511.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=34.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462671    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:544,45,0
6    31838713    rs494620    G    A    137.71    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=14;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=9.84;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=Y195;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31838589_31838824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544672    GT:AD:DP:GQ:PL    0/1:7,6:14:99:168,0,237
6    31839309    rs2242665    C    T    489.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.22;SNPEFF_AMINO_ACID_CHANGE=V111I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31839251_31839338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544672    GT:AD:DP:GQ:PL    1/1:0,18:18:39.12:523,39,0
6    31839331    rs2242664    C    T    403.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.9;SNPEFF_AMINO_ACID_CHANGE=G103;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31839251_31839338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544672    GT:AD:DP:GQ:PL    1/1:0,15:15:33.09:437,33,0
6    31851354    rs3869145    G    A    73.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.19;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477678    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,104
6    31856070    rs486416    G    A    923.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463484    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:957,72,0
6    31856294    rs117294980    T    C    58.06    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=7.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.81;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463484    GT:AD:DP:GQ:PL    0/1:7,3:10:88.05:88,0,255
6    31857154    rs76194925    C    T    527.83    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=37;Dels=0.0;FS=5.496;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.129;QD=14.27;ReadPosRankSum=-1.964;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463484    GT:AD:DP:GQ:PL    0/1:15,22:37:99:558,0,399
6    31860337    rs115699637    T    C    1089.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=S237;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31860184_31860339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHMT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375530    GT:AD:DP:GQ:PL    1/1:0,33:33:90.26:1122,90,0
6    31860526    rs35009002    A    C    655.97    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.071;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.69;MQ0=0;MQRankSum=-0.133;QD=10.75;ReadPosRankSum=-0.562;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465429    GT:AD:DP:GQ:PL    0/1:31,30:61:99:686,0,872
6    31864304    rs659445    G    A    3653.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3118;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375527    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3654,280,0
6    31864547    rs7887    G    T    663.57    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=46;Dels=0.0;FS=2.799;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=-0.816;QD=14.43;ReadPosRankSum=0.207;SNPEFF_AMINO_ACID_CHANGE=T112N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31864383_31864601;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHMT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375528    GT:AD:DP:GQ:PL    0/1:21,25:46:99:694,0,650
6    31867626    rs78852381    C    G    109.46    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=9.95;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432397    GT:AD:DP:GQ:PL    0/1:5,6:11:99:139,0,139
6    31895973    rs7746553    C    G    74.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.45;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299367    GT:AD:DP:GQ:PL    0/1:3,3:6:93.66:105,0,94
6    31904983    rs35843047    CA    C    93.42    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=17;FS=4.26;HRun=16;HaplotypeScore=110.6929;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=1.681;QD=5.5;ReadPosRankSum=2.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418949    GT:AD:DP:GQ:PL    0/1:7,10:17:81.35:132,0,81
6    31906828    rs78593564    G    A    148.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=16.49;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411571    GT:AD:DP:GQ:PL    0/1:3,6:9:83.44:178,0,83
6    31914935    rs1048709    A    G    2007.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=R150;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31914784_31914969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425368    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2041,150,0
6    31916013    rs17201431    T    C    62.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.91;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299367    GT:AD:DP:GQ:PL    0/1:6,3:9:92.19:92,0,226
6    31916400    rs537160    A    G    70.31    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=5.02;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299367    GT:AD:DP:GQ:PL    0/1:10,4:14:99:100,0,338
6    31919578    rs2072633    A    G    610.36    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.796;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.049;QD=12.21;ReadPosRankSum=-1.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452035    GT:AD:DP:GQ:PL    0/1:26,24:50:99:640,0,892
6    31922254    rs630379    A    C    2384.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.98;MQ0=0;QD=35.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425368    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2417,184,0
6    31927342    rs440454    A    G    40.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375394    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
6    31928799    rs114011334    T    C    1947.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492900    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1980,156,0
6    31929014    rs437179    A    C    1138.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=M214L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31928973_31929163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375394    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1171,87,0
6    31930351    rs2734331    A    G    574.46    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.517;DB;DP=40;Dels=0.0;FS=1.287;HRun=1;HaplotypeScore=0.9665;MQ=59.42;MQ0=0;MQRankSum=1.286;QD=14.36;ReadPosRankSum=0.027;SNPEFF_AMINO_ACID_CHANGE=T207;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31930216_31930362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544581    GT:AD:DP:GQ:PL    0/1:17,23:40:99:604,0,533
6    31930441    rs592229    G    T    318.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5508;MQ=57.87;MQ0=0;QD=14.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477400    GT:AD:DP:GQ:PL    1/1:6,16:22:33.06:351,33,0
6    31931137    rs401775    T    C    482.73    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=28;Dels=0.0;FS=5.787;HRun=0;HaplotypeScore=1.5253;MQ=60.0;MQ0=0;MQRankSum=-0.979;QD=17.24;ReadPosRankSum=1.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461073    GT:AD:DP:GQ:PL    0/1:10,17:28:99:513,0,294
6    31935567    rs116336668    G    A    600.10    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=41;Dels=0.0;FS=2.814;HRun=1;HaplotypeScore=1.6316;MQ=58.87;MQ0=0;MQRankSum=-1.572;QD=14.64;ReadPosRankSum=-1.515;SNPEFF_AMINO_ACID_CHANGE=D694N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31935492_31935639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544581    GT:AD:DP:GQ:PL    0/1:17,24:41:99:630,0,547
6    31936057    rs34241101    G    T    910.94    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=63;Dels=0.0;FS=1.215;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.0;QD=14.46;ReadPosRankSum=2.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DOM3Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337523    GT:AD:DP:GQ:PL    0/1:29,34:63:99:941,0,896
6    31936668    rs410851    T    C    1246.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=30.39;SNPEFF_AMINO_ACID_CHANGE=Y1067;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31936648_31936866;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKIV2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375394    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1279,105,0
6    31938017    rs146693975    TG    T    412.33    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.498;DB;DP=32;FS=1.412;HRun=5;HaplotypeScore=105.3567;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=12.89;ReadPosRankSum=2.945;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DOM3Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460058    GT:AD:DP:GQ:PL    0/1:16,16:32:99:451,0,514
6    31938412    rs114387279    G    T    425.11    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.915;DB;DP=35;Dels=0.0;FS=1.365;HRun=1;HaplotypeScore=1.8661;MQ=60.0;MQ0=0;MQRankSum=-0.431;QD=12.15;ReadPosRankSum=-0.88;SNPEFF_AMINO_ACID_CHANGE=H261Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31938383_31938602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DOM3Z;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337523    GT:AD:DP:GQ:PL    0/1:17,18:35:99:455,0,434
6    31938451    rs114643230    T    C    270.27    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=29;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;MQRankSum=0.814;QD=9.32;ReadPosRankSum=-0.913;SNPEFF_AMINO_ACID_CHANGE=P248;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31938383_31938602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DOM3Z;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337523    GT:AD:DP:GQ:PL    0/1:17,11:29:99:300,0,470
6    31939345    rs41267118    G    A    448.79    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.143;DB;DP=42;Dels=0.0;FS=2.694;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.591;QD=10.69;ReadPosRankSum=-0.88;SNPEFF_AMINO_ACID_CHANGE=Y36;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31939097_31939458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DOM3Z;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337523    GT:AD:DP:GQ:PL    0/1:24,18:42:99:479,0,680
6    31946837    rs386480    C    G    561.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375331    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:595,45,0
6    31946974    rs77143442    G    C    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375331    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:65,0,24
6    31947460    rs389883    G    T    455.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471028    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:489,39,0
6    31948400    rs28441225    T    G    656.09    PASS    AB=0.229;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.328;DB;DP=35;Dels=0.0;FS=2.341;HRun=0;HaplotypeScore=6.7593;MQ=44.71;MQ0=2;MQRankSum=3.549;QD=18.75;ReadPosRankSum=-1.086;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STK19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471028    GT:AD:DP:GQ:PL    0/1:8,27:35:6.56:686,0,7
6    31973511    rs71563398    G    A    127.94    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.66;MQ0=0;MQRankSum=0.135;QD=9.84;ReadPosRankSum=-1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428956    GT:AD:DP:GQ:PL    0/1:6,7:13:99:158,0,115
6    31974328    rs1079995    G    A    99    MQFilter40    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.08;MQ0=11;MQRankSum=1.221;QD=5.21;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428956    GT:AD:DP:GQ:PL    0/1:8,11:19:62.75:129,0,63
6    31974671    rs28615950    G    A    140.06    MQFilter40    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=20;Dels=0.0;FS=2.796;HRun=0;HaplotypeScore=0.0;MQ=33.31;MQ0=3;MQRankSum=-1.122;QD=7.0;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428956    GT:AD:DP:GQ:PL    0/1:13,7:20:99:170,0,279
6    31974723    rs28361034    A    G    194.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=26.58;MQ0=3;QD=17.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428956    GT:AD:DP:GQ:PL    1/1:3,8:11:18.06:228,18,0
6    31975151    rs41315836    T    G    331.54    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.32;DB;DP=114;Dels=0.0;FS=3.504;HRun=0;HaplotypeScore=0.0;MQ=48.86;MQ0=7;MQRankSum=-2.832;QD=2.91;ReadPosRankSum=-2.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428956    GT:AD:DP:GQ:PL    0/1:85,29:114:99:362,0,2511
6    31975259    rs187050905    G    A    1037.70    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DB;DP=70;Dels=0.0;FS=6.788;HRun=0;HaplotypeScore=1.8313;MQ=52.98;MQ0=0;MQRankSum=2.718;QD=14.82;ReadPosRankSum=-0.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428956    GT:AD:DP:GQ:PL    0/1:33,36:70:99:1068,0,983
6    31977281    rs139556344    G    C    89.92    MQFilter40;QDFilter2    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.26;MQ0=38;MQRankSum=0.0;QD=1.95;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP21A1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342991    GT:AD:DP:GQ:PL    0/1:21,25:46:99:120,0,111
6    31977391    rs146077048    C    T    357.15    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3134;MQ=30.06;MQ0=22;MQRankSum=0.153;QD=6.74;ReadPosRankSum=-0.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP21A1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342991    GT:AD:DP:GQ:PL    0/1:26,26:53:99:387,0,448
6    31977493    rs79770049    C    T    103.56    PASS    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=41;Dels=0.0;FS=11.409;HRun=0;HaplotypeScore=1.612;MQ=44.97;MQ0=3;MQRankSum=1.544;QD=2.53;ReadPosRankSum=-2.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP21A1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342991    GT:AD:DP:GQ:PL    0/1:34,7:41:99:134,0,915
6    31977528    rs111922130    C    G    578.80    PASS    AB=0.242;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.415;DB;DP=33;Dels=0.0;FS=17.267;HRun=0;HaplotypeScore=0.9789;MQ=43.2;MQ0=4;MQRankSum=-2.025;QD=17.54;ReadPosRankSum=-2.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP21A1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342991    GT:AD:DP:GQ:PL    0/1:8,25:33:99:609,0,206
6    31977548    rs115426577    G    A    198.88    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=25;Dels=0.0;FS=14.88;HRun=0;HaplotypeScore=2.9913;MQ=45.01;MQ0=4;MQRankSum=2.782;QD=7.96;ReadPosRankSum=2.218;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435363    GT:AD:DP:GQ:PL    0/1:14,11:25:99:229,0,319
6    31978624    .    A    G    185.18    MQFilter40    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.659;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=20.07;MQ0=30;MQRankSum=2.045;QD=3.7;ReadPosRankSum=0.964;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    0/1:31,19:50:99:215,0,295
6    31978746    rs55761244    G    A    989.51    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.968;DB;DP=79;Dels=0.0;FS=1.994;HRun=0;HaplotypeScore=0.0;MQ=50.56;MQ0=3;MQRankSum=0.101;QD=12.53;ReadPosRankSum=-0.271;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    0/1:42,37:79:99:1020,0,1085
6    31978824    rs148766553    G    A    1100.69    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=68;Dels=0.0;FS=5.64;HRun=0;HaplotypeScore=0.0;MQ=48.66;MQ0=2;MQRankSum=-1.913;QD=16.19;ReadPosRankSum=0.096;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    0/1:27,41:68:99:1131,0,818
6    31981146    rs4959021    T    C    1587.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.75;MQ0=2;QD=26.9;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1620,126,0
6    31996966    rs2746414    G    A    253.62    MQFilter40    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=0.464;DB;DP=50;Dels=0.0;FS=28.896;HRun=2;HaplotypeScore=0.9789;MQ=38.97;MQ0=0;MQRankSum=-0.487;QD=5.07;ReadPosRankSum=-0.332;SNPEFF_AMINO_ACID_CHANGE=S1176N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_31996944_31997115;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    0/1:37,13:50:99:284,0,1040
6    31997600    .    C    G    198.54    MQFilter40    AB=0.232;AC=1;AF=0.50;AN=2;BaseQRankSum=2.421;DP=56;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=17.42;MQ0=26;MQRankSum=-0.79;QD=3.55;ReadPosRankSum=1.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461632    GT:AD:DP:GQ:PL    0/1:13,43:56:99:229,0,121
6    32006317    rs76349952    C    T    188.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.57;MQ0=2;QD=18.83;SNPEFF_AMINO_ACID_CHANGE=L40;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32006042_32006401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP21A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418967    GT:AD:DP:GQ:PL    1/1:2,8:10:24.02:221,24,0
6    32006337    rs6464    C    A    204.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.65;MQ0=6;QD=13.6;SNPEFF_AMINO_ACID_CHANGE=P46;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32006042_32006401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP21A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418967    GT:AD:DP:GQ:PL    1/1:5,10:15:24.03:237,24,0
6    32006804    rs6451    C    A    64.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.02;MQ0=1;QD=16.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:96,9,0
6    32006823    rs59064806    A    G    54.47    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.37;MQ0=1;MQRankSum=-0.727;QD=10.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    0/1:1,4:5:28.61:84,0,29
6    32006827    rs6453    G    T    54.47    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.37;MQ0=1;MQRankSum=-0.727;QD=10.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    0/1:1,4:5:30.20:84,0,30
6    32006858    rs6467    C    A    127.50    MQFilter40    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.62;MQ0=1;MQRankSum=-0.736;QD=18.21;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=P105T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32006838_32007025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP21A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000478281    GT:AD:DP:GQ:PL    0/1:1,6:7:21.95:157,0,22
6    32007063    rs6466    C    T    385.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.47;MQ0=21;QD=9.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425700    GT:AD:DP:GQ:PL    1/1:7,32:39:39.09:419,39,0
6    32008963    rs144160397    C    T    56.46    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=11;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=32.37;MQ0=2;MQRankSum=0.248;QD=5.13;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP21A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462278    GT:AD:DP:GQ:PL    0/1:7,4:11:86.46:86,0,127
6    32011358    rs2856451    A    G    152.16    MQFilter40    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.427;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=19.95;MQ0=31;MQRankSum=-0.454;QD=2.98;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP21A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418967    GT:AD:DP:GQ:PL    0/1:29,22:51:99:182,0,349
6    32011714    rs397948    A    G    562.39    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.098;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.12;MQ0=1;MQRankSum=-3.807;QD=13.08;ReadPosRankSum=-0.997;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP21A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418967    GT:AD:DP:GQ:PL    0/1:21,22:43:99:592,0,637
6    32017105    rs61740337    A    G    330.41    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.494;DB;DP=44;Dels=0.0;FS=8.71;HRun=1;HaplotypeScore=2.3569;MQ=56.64;MQ0=0;MQRankSum=-2.739;QD=7.51;ReadPosRankSum=0.307;SNPEFF_AMINO_ACID_CHANGE=H3231;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32017047_32017364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375247    GT:AD:DP:GQ:PL    0/1:27,17:44:99:360,0,827
6    32020844    rs2077580    G    A    60.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.76;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:6,3:9:90.81:91,0,215
6    32024832    rs6937318    T    C    50.30    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.64;MQ0=0;MQRankSum=-1.754;QD=7.19;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:4,3:7:80.29:80,0,110
6    32025980    rs12196385    G    A    929.76    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.858;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.398;QD=13.1;ReadPosRankSum=1.019;SNPEFF_AMINO_ACID_CHANGE=D2560;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32025835_32026167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:37,34:71:99:960,0,1099
6    32026107    rs1009382    C    T    489.65    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-0.853;QD=14.84;ReadPosRankSum=-2.759;SNPEFF_AMINO_ACID_CHANGE=G2518E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32025835_32026167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:15,18:33:99:520,0,410
6    32026257    rs3130285    T    C    63.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:95,9,0
6    32029226    rs204887    A    G    545.62    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.285;DB;DP=55;Dels=0.0;FS=4.332;HRun=0;HaplotypeScore=2.3839;MQ=54.73;MQ0=0;MQRankSum=0.26;QD=9.92;ReadPosRankSum=1.006;SNPEFF_AMINO_ACID_CHANGE=Y2480;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32029174_32029497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:30,25:55:99:576,0,928
6    32029415    rs204886    T    C    1041.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.1;DB;DP=85;Dels=0.0;FS=0.953;HRun=0;HaplotypeScore=0.7887;MQ=40.63;MQ0=14;MQRankSum=-0.177;QD=12.25;ReadPosRankSum=0.603;SNPEFF_AMINO_ACID_CHANGE=L2417;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32029174_32029497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:34,51:85:99:1072,0,826
6    32032743    rs204883    G    A    645.88    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=54;Dels=0.0;FS=6.004;HRun=0;HaplotypeScore=1.6439;MQ=59.57;MQ0=0;MQRankSum=0.152;QD=11.96;ReadPosRankSum=-0.116;SNPEFF_AMINO_ACID_CHANGE=D2232;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32032598_32032894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:29,24:54:99:676,0,855
6    32050067    rs185819    T    C    825.34    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.62;DB;DP=52;Dels=0.0;FS=1.083;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.324;QD=15.87;ReadPosRankSum=-1.954;SNPEFF_AMINO_ACID_CHANGE=H1161R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32049813_32050103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:22,30:52:99:855,0,649
6    32052089    rs71536108    CTCCAGGAAGCCT    C    854.63    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.243;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=276.1783;IndelType=D;MQ=52.48;MQ0=0;MQRankSum=-3.439;QD=31.65;ReadPosRankSum=-0.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:18,9:27:99:894,0,2996
6    32052444    rs61995676    C    T    343.91    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=26;Dels=0.0;FS=1.58;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.789;QD=13.23;ReadPosRankSum=0.027;SNPEFF_AMINO_ACID_CHANGE=R1064H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32052190_32052486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNXB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375244    GT:AD:DP:GQ:PL    0/1:14,12:26:99:374,0,384
6    32063102    rs34891919    CAG    C    311.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=29.2879;IndelType=D;MQ=61.34;MQ0=0;QD=38.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375192    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:354,24,0
6    32088988    rs114161041    T    C    122.66    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=8.195;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=10.22;ReadPosRankSum=-0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468502    GT:AD:DP:GQ:PL    0/1:7,5:12:99:153,0,230
6    32097290    rs28732176    C    T    1425.89    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.209;DB;DP=92;Dels=0.0;FS=1.832;HRun=0;HaplotypeScore=2.6191;MQ=59.75;MQ0=0;MQRankSum=0.559;QD=15.5;ReadPosRankSum=0.551;SNPEFF_AMINO_ACID_CHANGE=A90T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32096484_32097631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375156    GT:AD:DP:GQ:PL    0/1:44,48:92:99:1456,0,1409
6    32119898    rs3131283    T    C    595.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475826    GT:AD:DP:GQ:PL    1/1:0,21:21:45.15:629,45,0
6    32122386    rs3134604    C    G    2972.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.3957;MQ=58.56;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=C11W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32122364_32122554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361568    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3005,235,0
6    32122472    rs3096696    C    A    495.95    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=3.514;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9825;MQ=56.88;MQ0=0;MQRankSum=-0.117;QD=8.41;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=A34E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32122364_32122554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324816    GT:AD:DP:GQ:PL    0/1:34,24:59:99:526,0,581
6    32134510    rs3096697    G    A    507.74    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=28;Dels=0.0;FS=3.524;HRun=1;HaplotypeScore=4.0109;MQ=60.0;MQ0=0;MQRankSum=-0.168;QD=18.13;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=R86K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32134478_32134587;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFL8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333845    GT:AD:DP:GQ:PL    0/1:10,18:28:99:538,0,277
6    32134656    rs114113397    T    C    281.58    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=10.06;ReadPosRankSum=-1.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336984    GT:AD:DP:GQ:PL    0/1:17,11:28:99:312,0,558
6    32134828    rs140776878    C    T    1716.36    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.326;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7296;MQ=59.49;MQ0=0;MQRankSum=0.925;QD=12.62;ReadPosRankSum=-0.745;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336984    GT:AD:DP:GQ:PL    0/1:67,69:136:99:1746,0,1901
6    32135052    rs141243642    CGGGCCACCCGAGGGACT    C    1117.99    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=3.266;DB;DP=17;FS=5.129;HRun=0;HaplotypeScore=258.7681;IndelType=D;MQ=46.27;MQ0=0;MQRankSum=-2.764;QD=65.76;ReadPosRankSum=-0.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336984    GT:AD:DP:GQ:PL    0/1:6,11:17:99:1157,0,1286
6    32138545    rs3130283    A    C    739.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.03;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333845    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:772,60,0
6    32146492    rs3134945    C    A    648.92    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=2.648;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=56.4;MQ0=0;MQRankSum=0.465;QD=19.66;ReadPosRankSum=-0.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AGER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375055    GT:AD:DP:GQ:PL    0/1:9,24:33:99:679,0,244
6    32146997    rs3132965    A    G    61.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.18;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AGER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375055    GT:AD:DP:GQ:PL    0/1:3,3:6:91.07:91,0,105
6    32147291    .    CT    C    63.28    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=2.634;DP=231;FS=20.862;HRun=13;HaplotypeScore=1016.455;IndelType=D;MQ=57.98;MQ0=0;MQRankSum=0.0;QD=0.27;ReadPosRankSum=-0.641;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AGER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375055    GT:AD:DP:GQ:PL    0/1:191,26:231:99:102,0,3510
6    32147696    rs3130349    G    A    773.04    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=3.086;DB;DP=61;Dels=0.0;FS=3.705;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.603;QD=12.67;ReadPosRankSum=-0.617;SNPEFF_AMINO_ACID_CHANGE=P105;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32147654_32147708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375094    GT:AD:DP:GQ:PL    0/1:34,27:61:99:803,0,986
6    32147761    rs3134943    T    C    2589.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AGER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375055    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2623,205,0
6    32148031    rs1062070    A    G    2250.77    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.654;DB;DP=182;Dels=0.0;FS=1.871;HRun=1;HaplotypeScore=4.9015;MQ=56.76;MQ0=0;MQRankSum=-0.608;QD=12.37;ReadPosRankSum=0.719;SNPEFF_AMINO_ACID_CHANGE=P157;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32148006_32148570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375094    GT:AD:DP:GQ:PL    0/1:99,83:182:99:2281,0,2902
6    32149537    rs3134941    C    G    70.82    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.85;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AGER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375056    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,138
6    32149816    rs3134940    T    C    78.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AGER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375056    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
6    32151420    rs35795092    G    C    579.25    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.691;DB;DP=63;Dels=0.0;FS=2.693;HRun=3;HaplotypeScore=0.0;MQ=51.45;MQ0=0;MQRankSum=0.582;QD=9.19;ReadPosRankSum=-0.636;SNPEFF_AMINO_ACID_CHANGE=V120;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32151332_32151527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AGER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375070    GT:AD:DP:GQ:PL    0/1:36,26:63:99:609,0,642
6    32151934    rs3131300    A    G    229.93    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.296;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=3.002;QD=12.1;ReadPosRankSum=0.795;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375050    GT:AD:DP:GQ:PL    0/1:10,9:19:99:260,0,238
6    32151994    rs115663512    A    T    663.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_AMINO_ACID_CHANGE=A2;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32151948_32152023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AGER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375055    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:696,51,0
6    32154285    rs114810457    A    G    603.38    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.121;DB;DP=43;Dels=0.0;FS=2.709;HRun=0;HaplotypeScore=0.0;MQ=56.68;MQ0=0;MQRankSum=1.373;QD=14.03;ReadPosRankSum=-0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375040    GT:AD:DP:GQ:PL    0/1:21,22:43:99:633,0,674
6    32154998    rs115219661    C    T    209.87    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=17;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=12.35;ReadPosRankSum=-0.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375040    GT:AD:DP:GQ:PL    0/1:10,7:17:99:240,0,304
6    32155581    rs204993    A    G    180.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.9933;MQ=57.63;MQ0=0;MQRankSum=-1.589;QD=22.51;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375040    GT:AD:DP:GQ:PL    0/1:2,6:8:60.39:210,0,60
6    32157639    rs169503    C    T    171.34    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.83;DB;DP=19;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=2.4529;MQ=58.78;MQ0=0;MQRankSum=-0.342;QD=9.02;ReadPosRankSum=-1.317;SNPEFF_AMINO_ACID_CHANGE=L18;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32157472_32157963;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375050    GT:AD:DP:GQ:PL    0/1:10,7:19:99:201,0,328
6    32163541    rs1044507    A    C    448.76    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.427;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.214;QD=14.96;ReadPosRankSum=1.256;SNPEFF_AMINO_ACID_CHANGE=S1895;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32162620_32163927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:13,17:30:99:479,0,348
6    32164587    rs187570181    C    T    360.92    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.198;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.99;MQ0=0;MQRankSum=1.55;QD=15.69;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:11,12:23:99:391,0,310
6    32164869    rs115210165    G    C    310.46    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.387;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.955;QD=9.13;ReadPosRankSum=-2.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:22,12:34:99:340,0,798
6    32165444    rs2071278    A    G    42.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=3.57;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:8,4:12:72.83:73,0,264
6    32168771    rs3134942    G    T    454.21    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.262;DB;DP=39;Dels=0.0;FS=1.31;HRun=1;HaplotypeScore=0.6651;MQ=58.81;MQ0=0;MQRankSum=-0.528;QD=11.65;ReadPosRankSum=-0.235;SNPEFF_AMINO_ACID_CHANGE=V1384;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32168608_32168783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:21,18:39:99:484,0,657
6    32169574    rs9267821    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    32169621    rs114640603    T    A    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
6    32170433    rs2071287    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    32172065    rs1044506    T    G    1036.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=G989;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32171914_32172166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1069,78,0
6    32178773    rs3130294    T    C    516.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473562    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:549,42,0
6    32180146    rs3131294    A    G    376.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473562    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
6    32183175    rs3131290    G    A    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.57;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473562    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,113
6    32184574    rs384247    G    A    102.35    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=9.3;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:7,4:11:99:132,0,255
6    32184705    rs3134798    G    A    2372.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.492;DB;DP=72;Dels=0.0;FS=3.599;HRun=1;HaplotypeScore=0.8941;MQ=59.68;MQ0=0;MQRankSum=-0.818;QD=32.95;ReadPosRankSum=-1.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2405,138,0
6    32186050    rs3134797    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    32187605    rs116559642    A    G    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
6    32187637    rs8192589    G    T    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:161,12,0
6    32187721    rs915896    A    T    192.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=17.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,11:11:24.01:225,24,0
6    32187722    rs431722    C    T    192.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=16.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,12:12:24.01:225,24,0
6    32188383    rs422951    T    C    494.57    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.996;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.881;QD=13.01;ReadPosRankSum=-0.646;SNPEFF_AMINO_ACID_CHANGE=T320A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32188182_32188418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:21,17:38:99:525,0,681
6    32188678    rs8192588    G    A    1209.54    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.059;DB;DP=82;Dels=0.0;FS=11.8;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.704;QD=14.75;ReadPosRankSum=1.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:38,44:82:99:1240,0,1116
6    32190217    rs915895    T    C    185.34    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=15.45;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:5,7:12:99:215,0,175
6    32190390    rs915894    T    G    856.50    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=2.584;DB;DP=76;Dels=0.0;FS=3.223;HRun=2;HaplotypeScore=1.8499;MQ=59.09;MQ0=0;MQRankSum=0.218;QD=11.27;ReadPosRankSum=-0.14;SNPEFF_AMINO_ACID_CHANGE=K117Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32190288_32190583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:43,33:76:99:886,0,1335
6    32190406    rs115393945    A    G    826.54    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.716;DB;DP=83;Dels=0.0;FS=4.413;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.264;QD=9.96;ReadPosRankSum=0.505;SNPEFF_AMINO_ACID_CHANGE=G111;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32190288_32190583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:49,34:83:99:857,0,1426
6    32190620    rs114559451    T    C    724.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    1/1:0,22:23:60.18:758,60,0
6    32191457    rs114422860    G    A    184.32    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.879;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;MQRankSum=0.244;QD=10.84;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:10,7:17:99:214,0,290
6    32191620    rs116644382    C    T    1026.89    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.547;DB;DP=73;Dels=0.0;FS=6.449;HRun=0;HaplotypeScore=2.8334;MQ=58.14;MQ0=0;MQRankSum=0.845;QD=14.07;ReadPosRankSum=0.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:35,38:73:99:1057,0,991
6    32191658    rs35795312    T    TAGCAGCAGC    791    PASS    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=316.5394;IndelType=I;MQ=55.33;MQ0=0;MQRankSum=-1.299;QD=19.77;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=L16RCCL;SNPEFF_CODON_CHANGE=cta/cGCTGCTGCTta;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_6_32191633_32191844;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NOTCH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375023    GT:AD:DP:GQ:PL    0/1:33,7:40:99:830,0,633
6    32260559    rs482194    A    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
6    32261771    rs560505    A    G    3032.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=S211P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32260492_32261812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527965    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3065,229,0
6    32261940    rs146647793    G    C    479.05    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.302;QD=14.97;ReadPosRankSum=-0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:15,17:32:99:509,0,535
6    32268501    rs115444629    A    T    1748.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6439;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1781,132,0
6    32270500    rs477005    A    G    766.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:800,63,0
6    32281513    .    G    T    230.65    PASS    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.46;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.17;MQ0=1;MQRankSum=-4.39;QD=2.02;ReadPosRankSum=-0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:92,22:114:99:261,0,3079
6    32281534    .    A    G    179.50    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=3.744;DP=104;Dels=0.0;FS=8.779;HRun=0;HaplotypeScore=0.0;MQ=56.46;MQ0=2;MQRankSum=-4.915;QD=1.73;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:86,18:104:99:209,0,2781
6    32284423    rs495140    A    T    33.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
6    32287952    .    C    A    101.80    QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.465;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=48.78;MQ0=5;MQRankSum=-4.941;QD=1.64;ReadPosRankSum=-1.899;SNPEFF_AMINO_ACID_CHANGE=A204S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32287940_32287982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:47,15:62:99:132,0,1598
6    32287955    .    T    C    122.50    QDFilter2    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.43;MQ0=5;MQRankSum=-5.32;QD=1.91;ReadPosRankSum=-2.062;SNPEFF_AMINO_ACID_CHANGE=R203G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32287940_32287982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:47,17:64:99:152,0,1599
6    32288041    rs575765    T    C    1601.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=44.11;MQ0=1;QD=29.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1634,132,0
6    32288089    rs115733104    C    T    822.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=40.09;MQ0=1;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,26:26:72.20:856,72,0
6    32288190    rs574710    T    C    130.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.49;MQ0=0;QD=18.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,7:7:15.02:163,15,0
6    32290704    rs4428543    G    A    60.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=12.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,5:5:9:92,9,0
6    32290748    rs115134065    A    G    155.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=22.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:189,18,0
6    32290927    rs114686296    G    T    763.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:796,60,0
6    32290954    rs485774    A    G    482.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,16:16:45.08:515,45,0
6    32291270    rs35685508    CAG    C    737.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=68.8346;IndelType=D;MQ=61.19;MQ0=0;QD=40.97;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_32291235_32291301;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:780,54,0
6    32291359    rs116458776    T    G    1473.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.25;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1507,117,0
6    32291542    rs742697    C    T    253.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
6    32292084    rs115159758    C    T    604.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:637,51,0
6    32292392    rs57257463    C    CAACT    8540.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;FS=0.0;HRun=0;HaplotypeScore=331.082;IndelType=I;MQ=54.64;MQ0=0;QD=82.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:2,88:104:99:8541,307,0
6    32292560    rs67108152    AT    A    375.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=11;HaplotypeScore=129.9209;IndelType=D;MQ=52.54;MQ0=0;QD=16.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:6,17:23:54.64:417,55,0
6    32292715    rs552339    G    A    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    32298372    rs115987353    A    G    773.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=S147P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32298366_32298386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442822    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:807,60,0
6    32299592    rs1003879    G    A    153.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.17;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532023    GT:AD:DP:GQ:PL    0/1:3,5:8:80.59:183,0,81
6    32299715    rs742582    G    A    1285.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532023    GT:AD:DP:GQ:PL    1/1:0,33:33:96.32:1319,96,0
6    32299873    rs114022857    G    T    2076.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532023    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2110,157,0
6    32301514    rs115274544    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532023    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    32301804    rs9391777    G    C    1569.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532023    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1602,117,0
6    32303068    rs10807100    G    A    252    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=36.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532023    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
6    32303160    rs114475254    G    T    294.22    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.95;QD=15.49;ReadPosRankSum=0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532023    GT:AD:DP:GQ:PL    0/1:8,11:19:99:324,0,252
6    32303511    rs6929776    G    A    202.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532023    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
6    32304222    rs9366794    C    G    151.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534588    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
6    32306657    rs3830808    GAAAGA    G    854.58    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=3.837;DB;DP=30;FS=3.119;HRun=0;HaplotypeScore=163.9137;IndelType=D;MQ=55.99;MQ0=0;MQRankSum=-0.943;QD=28.49;ReadPosRankSum=0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:14,16:30:99:894,0,1151
6    32306970    rs3117138    C    A    209.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
6    32307137    rs2022534    T    C    689.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:723,54,0
6    32307260    rs114284308    T    G    2148.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=39.79;SNPEFF_AMINO_ACID_CHANGE=I121;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32307205_32307285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2182,160,0
6    32307382    rs1033500    G    A    3911.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.62;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=P105L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32307377_32307415;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442822    GT:AD:DP:GQ:PL    1/1:0,120:120:99:3912,301,0
6    32307446    rs116833320    T    C    3022.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=59.73;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3055,229,0
6    32310967    rs114668027    C    T    1096.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1129,87,0
6    32310986    rs9268261    C    G    1021.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,32:32:84.25:1054,84,0
6    32311148    rs115241061    C    G    355.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:389,30,0
6    32317471    rs2076538    A    C    1125.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1158,87,0
6    32317922    rs138448391    TTTTC    T    7744.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;FS=0.0;HRun=0;HaplotypeScore=769.8442;IndelType=D;MQ=54.76;MQ0=2;QD=51.63;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_32317902_32317938;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000375002    GT:AD:DP:GQ:PL    1/1:8,142:147:99:7745,424,0
6    32318036    rs761187    A    G    1499.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.11;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1532,114,0
6    32323529    rs1265758    A    G    1060.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1094,81,0
6    32332996    rs9268357    C    G    130.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
6    32333093    rs114919544    A    G    789.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:823,69,0
6    32333098    rs3129922    C    T    975.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,32:32:75.24:1009,75,0
6    32333195    rs3129923    A    G    1599.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1632,132,0
6    32333410    rs9268363    A    C    1311.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.98;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1345,105,0
6    32333837    rs142304615    T    TTTC    2946.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=0;HaplotypeScore=180.8152;IndelType=I;MQ=55.31;MQ0=0;QD=47.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:12,50:62:99:2989,157,0
6    32333955    rs114399385    T    C    2351.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9663;MQ=58.57;MQ0=0;MQRankSum=1.039;QD=36.18;ReadPosRankSum=1.572;SNPEFF_AMINO_ACID_CHANGE=Y68C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32333944_32333964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:1,64:65:99:2385,143,0
6    32334224    rs9268369    C    G    645.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:678,51,0
6    32334241    rs3129928    G    T    443.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:477,36,0
6    32334258    rs9268370    G    T    210.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
6    32335516    rs3129931    C    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
6    32335558    rs113142350    A    AAGAG    567.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=37.1936;IndelType=I;MQ=54.55;MQ0=0;QD=70.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:610,24,0
6    32335777    rs34951094    TA    T    1513.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=3;HaplotypeScore=115.3705;IndelType=D;MQ=59.13;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1556,126,0
6    32336495    rs3129938    T    A    577.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:611,45,0
6    32336520    rs35272353    AG    A    1049.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=1;HaplotypeScore=176.0809;IndelType=D;MQ=60.0;MQ0=0;QD=40.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1092,78,0
6    32336586    rs9268384    A    G    1013.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=Y35H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32336559_32336591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,30:30:75.23:1047,75,0
6    32337630    rs2273017    G    A    4893.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.89;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4893,364,0
6    32337686    rs115311321    A    G    6532.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=C29R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32337674_32337760;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:0,200:200:99:6533,491,0
6    32337854    rs111479233    C    CT    678.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=7;HaplotypeScore=70.9381;IndelType=I;MQ=61.15;MQ0=0;QD=24.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    1/1:8,20:28:60.18:720,60,0
6    32339348    rs2076536    C    T    332.13    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.464;QD=20.76;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:6,10:16:99:362,0,201
6    32339498    rs17202141    C    G    433.48    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.199;DB;DP=45;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=9.63;ReadPosRankSum=0.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:28,17:45:99:463,0,985
6    32339548    rs2073045    G    A    507.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.17;MQ0=0;MQRankSum=-0.952;QD=18.12;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305725    GT:AD:DP:GQ:PL    0/1:12,16:28:99:537,0,378
6    32361821    rs3129953    C    T    510.09    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=2.921;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=9.62;ReadPosRankSum=-1.567;SNPEFF_AMINO_ACID_CHANGE=T364;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32361746_32361834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374995    GT:AD:DP:GQ:PL    0/1:34,19:53:99:540,0,908
6    32362416    rs114249283    T    G    570.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374993    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:604,45,0
6    32363816    rs2076530    T    C    468.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=42;Dels=0.0;FS=1.374;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.728;QD=11.16;ReadPosRankSum=0.172;SNPEFF_AMINO_ACID_CHANGE=S150G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32363816_32364163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414363    GT:AD:DP:GQ:PL    0/1:24,18:42:99:499,0,706
6    32363844    rs9268480    C    T    525.08    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.127;DB;DP=51;Dels=0.0;FS=2.49;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.107;QD=10.3;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=Q140;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32363816_32364163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414363    GT:AD:DP:GQ:PL    0/1:29,22:51:99:555,0,844
6    32363955    rs115091069    T    C    255.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.9;QD=9.47;ReadPosRankSum=-0.643;SNPEFF_AMINO_ACID_CHANGE=V103;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32363816_32364163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414363    GT:AD:DP:GQ:PL    0/1:18,9:27:99:286,0,546
6    32370684    rs115579508    A    G    58.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=7.31;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446536    GT:AD:DP:GQ:PL    0/1:5,3:8:88.46:88,0,175
6    32370835    rs115051749    T    C    590.65    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=37;Dels=0.0;FS=1.314;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.966;QD=15.96;ReadPosRankSum=-0.353;SNPEFF_AMINO_ACID_CHANGE=K196E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32370712_32370993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374993    GT:AD:DP:GQ:PL    0/1:16,21:37:99:621,0,479
6    32374622    rs3763307    A    T    226.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=18.84;ReadPosRankSum=1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374993    GT:AD:DP:GQ:PL    0/1:4,8:12:99:256,0,131
6    32407709    rs14004    C    A    528.98    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.36;DB;DP=28;Dels=0.0;FS=6.066;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.695;QD=18.89;ReadPosRankSum=-0.312;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462200    GT:AD:DP:GQ:PL    0/1:10,18:28:99:559,0,261
6    32410137    rs3129883    T    C    1882.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1916,138,0
6    32410210    rs116836694    T    C    1510.16    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=102;Dels=0.0;FS=1.609;HRun=0;HaplotypeScore=1.9532;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=14.81;ReadPosRankSum=0.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    0/1:50,52:102:99:1540,0,1529
6    32410215    rs3129885    T    C    1395.54    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.682;DB;DP=102;Dels=0.0;FS=0.755;HRun=0;HaplotypeScore=1.9532;MQ=60.0;MQ0=0;MQRankSum=1.172;QD=13.68;ReadPosRankSum=0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    0/1:50,52:102:99:1426,0,1549
6    32410576    rs3129886    T    C    1980.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    1/1:0,52:52:99:2013,150,0
6    32410691    rs3129887    G    A    1166.51    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.814;DB;DP=84;Dels=0.0;FS=0.843;HRun=2;HaplotypeScore=1.4725;MQ=59.73;MQ0=0;MQRankSum=0.882;QD=13.89;ReadPosRankSum=-2.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    0/1:44,40:84:99:1197,0,1261
6    32410716    rs9268658    G    A    1377.35    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.57;DB;DP=98;Dels=0.0;FS=0.774;HRun=0;HaplotypeScore=2.8278;MQ=59.76;MQ0=0;MQRankSum=0.126;QD=14.05;ReadPosRankSum=-1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    0/1:48,50:98:99:1407,0,1478
6    32410941    rs9268659    T    C    1068.49    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.246;DB;DP=115;Dels=0.0;FS=0.736;HRun=0;HaplotypeScore=0.8321;MQ=59.64;MQ0=0;MQRankSum=0.736;QD=9.29;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    0/1:70,45:115:99:1098,0,2370
6    32410987    rs3135391    A    G    2798.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=T118;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32410962_32411243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395388    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2832,220,0
6    32411035    rs8084    A    C    822.45    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.701;DB;DP=72;Dels=0.0;FS=2.046;HRun=0;HaplotypeScore=1.7608;MQ=59.68;MQ0=0;MQRankSum=0.4;QD=11.42;ReadPosRankSum=-1.765;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    0/1:38,34:72:99:852,0,1274
6    32411307    rs116348849    C    T    572.44    PASS    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=25;Dels=0.0;FS=5.251;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.664;QD=22.9;ReadPosRankSum=0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462200    GT:AD:DP:GQ:PL    0/1:7,18:25:99:602,0,200
6    32411376    rs2239805    T    G    605.36    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.972;DB;DP=44;Dels=0.0;FS=1.286;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.412;QD=13.76;ReadPosRankSum=-1.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462200    GT:AD:DP:GQ:PL    0/1:20,24:44:99:635,0,671
6    32411523    rs2239804    T    C    1741.28    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.494;DB;DP=153;Dels=0.0;FS=2.087;HRun=0;HaplotypeScore=1.5362;MQ=59.85;MQ0=0;MQRankSum=1.084;QD=11.38;ReadPosRankSum=-0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462200    GT:AD:DP:GQ:PL    0/1:83,70:153:99:1771,0,2425
6    32411646    rs7192    T    G    934.34    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=73;Dels=0.0;FS=2.667;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.085;QD=12.8;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=L217V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32411533_32411698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374982    GT:AD:DP:GQ:PL    0/1:41,32:73:99:964,0,1346
6    32411726    rs3129888    G    A    835.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462200    GT:AD:DP:GQ:PL    1/1:0,27:27:63.21:868,63,0
6    32411833    rs2239803    C    T    72.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.01;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462200    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:102,0,27
6    32411846    rs113710979    C    G    87.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462200    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
6    32427748    rs9268831    C    T    1597.93    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=2.671;DB;DP=142;Dels=0.0;FS=1.362;HRun=0;HaplotypeScore=2.3322;MQ=59.84;MQ0=0;MQRankSum=-0.122;QD=11.25;ReadPosRankSum=-0.687;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-DRB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449413    GT:AD:DP:GQ:PL    0/1:84,58:142:99:1628,0,2486
6    32427789    rs9268832    T    C    1462.76    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.083;DB;DP=141;Dels=0.0;FS=3.155;HRun=0;HaplotypeScore=2.4948;MQ=59.84;MQ0=0;MQRankSum=1.32;QD=10.37;ReadPosRankSum=1.098;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-DRB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449413    GT:AD:DP:GQ:PL    0/1:78,63:141:99:1493,0,2354
6    32428062    rs9268833    C    T    113.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=16.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=HLA-DRB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449413    GT:AD:DP:GQ:PL    0/1:3,4:7:90.40:143,0,90
6    32485944    rs139547629    T    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
6    32485949    rs112200867    T    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
6    32485963    rs145340642    C    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
6    32487114    rs113188320    T    G    215.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=19.73;MQ0=2;QD=11.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,19:19:27.03:249,27,0
6    32487170    rs1136633    G    A    607.63    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.604;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9849;MQ=19.29;MQ0=23;MQRankSum=-1.244;QD=10.48;ReadPosRankSum=-0.249;SNPEFF_AMINO_ACID_CHANGE=T210M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:7,51:58:8.21:639,8,0
6    32487175    rs77866376    G    A    622.22    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9849;MQ=19.23;MQ0=23;MQRankSum=0.998;QD=10.55;ReadPosRankSum=-0.998;SNPEFF_AMINO_ACID_CHANGE=S208;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:11,48:59:13.98:655,14,0
6    32487205    rs149415995    C    T    502.02    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DB;DP=87;Dels=0.0;FS=1.617;HRun=1;HaplotypeScore=0.0;MQ=19.21;MQ0=41;MQRankSum=-0.363;QD=5.77;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=E198;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:29,58:87:99:532,0,176
6    32487214    rs144016913    T    C    785.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.45;MQ0=45;QD=9.35;SNPEFF_AMINO_ACID_CHANGE=R195;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,83:84:72.14:819,72,0
6    32487268    rs75732937    A    G    768.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4706;MQ=15.58;MQ0=60;QD=7.46;SNPEFF_AMINO_ACID_CHANGE=I177;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,103:103:75.15:802,75,0
6    32487309    rs3200405    T    C    644.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.7;MQ0=47;QD=8.26;SNPEFF_AMINO_ACID_CHANGE=S164G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,78:78:63.12:677,63,0
6    32487353    rs114293611    T    C    129.41    MQFilter40    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.779;DB;DP=41;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=1.9468;MQ=21.54;MQ0=15;MQRankSum=-0.377;QD=3.16;ReadPosRankSum=0.97;SNPEFF_AMINO_ACID_CHANGE=N149S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:18,23:41:99:159,0,362
6    32487390    rs77180119    T    G    99.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=18.83;MQ0=2;QD=12.39;SNPEFF_AMINO_ACID_CHANGE=T137P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,7:7:14.96:132,15,0
6    32487394    rs144981689    G    A    43.58    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.83;MQ0=2;MQRankSum=1.231;QD=5.45;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=T135;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32487147_32487428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:4,4:8:28.37:74,0,28
6    32487458    rs114645980    C    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.43;MQ0=0;QD=8.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
6    32489766    rs41562819    A    T    40.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.24;MQ0=0;QD=20.38;SNPEFF_AMINO_ACID_CHANGE=F96I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32489682_32489951;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
6    32497736    rs72508460    T    C    49.25    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9615;MQ=33.42;MQ0=0;MQRankSum=-0.421;QD=6.16;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:4,4:8:79.24:79,0,120
6    32497741    rs71549217    C    A    91.04    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9598;MQ=33.42;MQ0=0;MQRankSum=1.3;QD=11.38;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:3,4:8:67.50:121,0,67
6    32497753    .    A    T    64.92    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9401;MQ=32.58;MQ0=0;MQRankSum=-0.361;QD=6.49;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:5,4:10:94.91:95,0,148
6    32497792    rs112722893    T    C    48.84    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.484;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.9477;MQ=34.24;MQ0=0;MQRankSum=-0.436;QD=2.33;ReadPosRankSum=-0.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:15,5:21:78.84:79,0,388
6    32497810    .    A    C    33.80    MQFilter40;QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=0.911;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.8835;MQ=37.77;MQ0=0;MQRankSum=-1.692;QD=1.3;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:21,5:26:63.79:64,0,564
6    32497821    .    C    G    44.05    MQFilter40;QDFilter2    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=8.6788;MQ=37.22;MQ0=0;MQRankSum=-3.04;QD=1.57;ReadPosRankSum=-0.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:16,7:28:74.04:74,0,508
6    32497824    .    C    A    92.15    MQFilter40    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DP=29;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=8.7165;MQ=38.48;MQ0=0;MQRankSum=-2.09;QD=3.18;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:18,11:29:99:122,0,593
6    32497847    rs112459761    A    C    767.06    MQFilter40    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.54;DB;DP=58;Dels=0.0;FS=14.151;HRun=0;HaplotypeScore=12.8449;MQ=36.62;MQ0=3;MQRankSum=2.871;QD=13.23;ReadPosRankSum=2.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:30,28:58:99:797,0,703
6    32497856    .    A    T    243.25    HaplotypeScoreFilter13;MQFilter40    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.482;DP=70;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=25.6968;MQ=37.62;MQ0=3;MQRankSum=0.651;QD=3.47;ReadPosRankSum=-1.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:56,14:70:99:273,0,1372
6    32497863    rs113810140    C    G    554.79    HaplotypeScoreFilter13;MQFilter40    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.575;DB;DP=81;Dels=0.0;FS=2.334;HRun=0;HaplotypeScore=52.3055;MQ=37.63;MQ0=3;MQRankSum=3.367;QD=6.85;ReadPosRankSum=1.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:49,30:81:99:585,0,1207
6    32497868    rs6935811    C    G    214.54    HaplotypeScoreFilter13;MQFilter40    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.669;DB;DP=86;Dels=0.0;FS=12.93;HRun=0;HaplotypeScore=27.1475;MQ=37.05;MQ0=3;MQRankSum=-1.04;QD=2.49;ReadPosRankSum=0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:67,17:86:99:245,0,1745
6    32497896    rs76562035    A    G    43.38    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.874;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.261;DB;DP=100;Dels=0.0;FS=5.695;HRun=0;HaplotypeScore=74.3654;MQ=35.36;MQ0=3;MQRankSum=-2.046;QD=0.43;ReadPosRankSum=2.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:83,12:100:73.38:73,0,2156
6    32497901    rs79192142    C    T    1223.46    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.207;DB;DP=100;Dels=0.0;FS=0.898;HRun=0;HaplotypeScore=73.1231;MQ=34.97;MQ0=3;MQRankSum=0.793;QD=12.23;ReadPosRankSum=-3.97;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:44,56:100:99:1253,0,1019
6    32497904    rs34716432    C    T    278.15    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.657;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=85.035;MQ=34.81;MQ0=3;MQRankSum=1.813;QD=2.78;ReadPosRankSum=2.396;SNPEFF_AMINO_ACID_CHANGE=R33Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32497902_32498064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:84,16:100:99:308,0,2023
6    32497905    rs71549219    G    A    899.03    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.134;DB;DP=101;Dels=0.0;FS=7.092;HRun=0;HaplotypeScore=85.035;MQ=35.15;MQ0=3;MQRankSum=1.872;QD=8.9;ReadPosRankSum=-4.112;SNPEFF_AMINO_ACID_CHANGE=R33*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_6_32497902_32498064;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:36,45:101:99:929,0,828
6    32497914    rs76748970    C    T    915.40    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.19;DB;DP=103;Dels=0.0;FS=10.809;HRun=0;HaplotypeScore=63.6003;MQ=35.79;MQ0=3;MQRankSum=2.092;QD=8.89;ReadPosRankSum=-2.652;SNPEFF_AMINO_ACID_CHANGE=G30R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32497902_32498064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:55,47:103:99:945,0,1373
6    32497943    rs17211043    A    G    856.52    MQFilter40    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.588;DB;DP=76;Dels=0.0;FS=7.038;HRun=0;HaplotypeScore=1.9772;MQ=36.91;MQ0=0;MQRankSum=1.845;QD=11.27;ReadPosRankSum=3.475;SNPEFF_AMINO_ACID_CHANGE=M20T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32497902_32498064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:35,40:76:99:887,0,754
6    32497961    rs1064587    T    G    330.10    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.8694;MQ=38.45;MQ0=0;QD=7.34;SNPEFF_AMINO_ACID_CHANGE=K14T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32497902_32498064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:1,37:45:41.94:363,42,0
6    32497962    rs701884    T    C    330.10    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.7637;MQ=38.64;MQ0=0;QD=7.5;SNPEFF_AMINO_ACID_CHANGE=K14E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32497902_32498064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,44:44:41.94:363,42,0
6    32497970    .    T    C    33.90    MQFilter40;QDFilter2;SnpCluster    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=0.942;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8325;MQ=39.47;MQ0=0;MQRankSum=-2.36;QD=0.69;ReadPosRankSum=-1.267;SNPEFF_AMINO_ACID_CHANGE=Y11C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32497902_32498064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:37,12:49:63.89:64,0,994
6    32498033    rs72851011    G    A    657.57    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.787;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.4233;MQ=40.48;MQ0=3;MQRankSum=2.416;QD=14.94;ReadPosRankSum=0.235;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_32497902_32498064;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    0/1:19,24:44:99:688,0,311
6    32498094    rs71549223    G    A    327.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=40.77;MQ0=2;QD=23.43;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374975    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:361,30,0
6    32522371    rs112569073    A    C    71.02    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8936;MQ=21.58;MQ0=0;MQRankSum=1.881;QD=7.89;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:5,4:9:44.04:101,0,44
6    32522380    rs112115106    T    TG    389.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=180.641;IndelType=I;MQ=23.12;MQ0=0;QD=43.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    1/1:1,8:9:27.09:431,27,0
6    32522389    rs36149991    T    G    175.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.63;MQ0=0;QD=14.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    1/1:0,12:12:23.93:209,24,0
6    32522401    rs36183131    G    A    533.44    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8991;MQ=23.34;MQ0=0;QD=17.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    1/1:0,30:30:59.90:566,60,0
6    32522408    .    G    T    94.26    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DP=43;Dels=0.0;FS=6.284;HRun=0;HaplotypeScore=30.2455;MQ=23.85;MQ0=1;MQRankSum=-0.221;QD=2.19;ReadPosRankSum=-1.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:33,10:43:99:124,0,483
6    32522411    rs72492331    T    G    102.76    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.415;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=32.2016;MQ=24.46;MQ0=1;MQRankSum=1.647;QD=2.1;ReadPosRankSum=-1.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:35,14:49:99:133,0,520
6    32522412    rs75424216    A    G    112.87    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=1.206;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=34.1329;MQ=24.46;MQ0=1;MQRankSum=2.297;QD=2.3;ReadPosRankSum=1.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:39,10:49:99:143,0,576
6    32522434    rs35570280    T    G    1176.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=8.7244;MQ=24.91;MQ0=1;QD=19.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1209,123,0
6    32522446    rs79234433    T    G    180    MQFilter40    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.758;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.745;MQ=24.06;MQ0=5;MQRankSum=-1.408;QD=2.54;ReadPosRankSum=-4.003;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:43,28:71:99:210,0,829
6    32522458    rs146159471    G    A    99.07    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=79;Dels=0.0;FS=5.453;HRun=3;HaplotypeScore=21.2124;MQ=23.9;MQ0=6;MQRankSum=2.347;QD=1.25;ReadPosRankSum=-0.834;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:65,14:79:99:129,0,974
6    32522473    rs71536531    C    G    296.35    HaplotypeScoreFilter13;MQFilter40    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.316;DB;DP=87;Dels=0.0;FS=14.343;HRun=0;HaplotypeScore=38.4401;MQ=24.09;MQ0=7;MQRankSum=-1.736;QD=3.41;ReadPosRankSum=-2.945;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:51,36:87:99:326,0,880
6    32522489    rs17852220    C    T    246.08    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.04;DB;DP=100;Dels=0.0;FS=3.678;HRun=1;HaplotypeScore=84.3635;MQ=25.38;MQ0=8;MQRankSum=1.759;QD=2.46;ReadPosRankSum=-0.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:77,23:100:99:276,0,1216
6    32522490    rs113453333    G    A    684.11    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=4.513;DB;DP=101;Dels=0.0;FS=8.191;HRun=0;HaplotypeScore=89.252;MQ=25.37;MQ0=9;MQRankSum=-3.433;QD=6.77;ReadPosRankSum=-1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:48,53:101:99:714,0,720
6    32522494    rs111715782    C    T    276.82    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=97;Dels=0.0;FS=7.264;HRun=0;HaplotypeScore=88.8872;MQ=25.28;MQ0=9;MQRankSum=-2.463;QD=2.85;ReadPosRankSum=-0.784;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:68,29:97:99:307,0,1096
6    32522495    rs184809771    G    A    281.57    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=100;Dels=0.0;FS=11.698;HRun=0;HaplotypeScore=88.9122;MQ=25.17;MQ0=9;MQRankSum=-0.887;QD=2.82;ReadPosRankSum=0.105;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:74,26:100:99:312,0,1086
6    32522501    .    A    G    594.34    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=4.047;DP=94;Dels=0.0;FS=46.522;HRun=2;HaplotypeScore=63.9575;MQ=24.93;MQ0=10;MQRankSum=0.817;QD=6.32;ReadPosRankSum=-0.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440876    GT:AD:DP:GQ:PL    0/1:50,44:94:99:624,0,680
6    32522506    rs139996300    CCACTTGGCAGGTGTAAACCT    C    1350.36    PASS    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.016;DB;DP=62;FS=17.682;HRun=0;HaplotypeScore=1689.461;IndelType=D;MQ=24.43;MQ0=10;MQRankSum=0.629;QD=15.0;ReadPosRankSum=2.177;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:81,9:62:99:1389,0,9202
6    32522570    rs35923382    G    A    1015.80    MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.483;DB;DP=90;Dels=0.0;FS=2.386;HRun=2;HaplotypeScore=5.7712;MQ=26.93;MQ0=4;MQRankSum=4.283;QD=11.29;ReadPosRankSum=0.926;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:52,38:90:99:1046,0,655
6    32522576    rs35882239    A    G    1889.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.7002;MQ=27.71;MQ0=3;QD=21.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    1/1:1,84:86:99:1923,180,0
6    32522598    .    A    G    191.70    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.051;DP=64;Dels=0.0;FS=7.832;HRun=0;HaplotypeScore=0.0;MQ=28.8;MQ0=2;MQRankSum=-4.524;QD=3.0;ReadPosRankSum=-1.949;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:40,24:64:99:222,0,1128
6    32522603    .    G    C    129.07    MQFilter40    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DP=55;Dels=0.0;FS=5.235;HRun=0;HaplotypeScore=0.0;MQ=30.3;MQ0=0;MQRankSum=-3.938;QD=2.35;ReadPosRankSum=-0.639;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:39,16:55:99:159,0,1114
6    32522610    .    G    C    104.56    MQFilter40;QDFilter2    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=0.757;DP=53;Dels=0.0;FS=2.526;HRun=2;HaplotypeScore=4.8842;MQ=30.55;MQ0=0;MQRankSum=-4.348;QD=1.97;ReadPosRankSum=-0.595;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:39,14:53:99:135,0,1077
6    32522627    .    A    G    62.42    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.762;DP=44;Dels=0.0;FS=2.541;HRun=1;HaplotypeScore=5.8299;MQ=31.46;MQ0=0;MQRankSum=-4.093;QD=1.42;ReadPosRankSum=-0.894;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:33,11:44:92.41:92,0,972
6    32522634    rs74707099    T    C    794.94    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.837;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.883;MQ=30.99;MQ0=0;MQRankSum=2.894;QD=21.48;ReadPosRankSum=2.441;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    1/1:4,33:37:9.46:827,9,0
6    32522650    rs35455030    T    C    642.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.46;MQ0=1;QD=25.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    1/1:0,25:25:60.17:676,60,0
6    32522679    rs112103446    G    C    132.65    MQFilter40    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.042;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=27.46;MQ0=1;MQRankSum=1.504;QD=8.29;ReadPosRankSum=0.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:2,14:16:0.66:161,0,1
6    32522683    rs35373206    C    A    151.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=27.35;MQ0=1;QD=10.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    1/1:0,15:15:18.02:184,18,0
6    32522691    rs111879084    G    A    89.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.92;MQ0=1;QD=7.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    1/1:0,12:12:12.01:122,12,0
6    32522698    rs112519097    G    T    89.17    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8936;MQ=26.92;MQ0=1;MQRankSum=1.423;QD=7.43;ReadPosRankSum=-1.107;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:2,10:12:6.65:119,0,7
6    32522703    rs112117115    T    G    89.17    MQFilter40    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.474;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8936;MQ=27.09;MQ0=1;MQRankSum=1.423;QD=6.86;ReadPosRankSum=-1.423;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:2,11:13:6.65:119,0,7
6    32522731    rs36214033    C    T    75.98    MQFilter40    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9168;MQ=26.73;MQ0=1;MQRankSum=0.067;QD=6.91;ReadPosRankSum=0.762;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:3,8:11:37.09:106,0,37
6    32522736    rs36214032    A    C    55.29    MQFilter40    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9468;MQ=31.27;MQ0=1;MQRankSum=1.179;QD=5.53;ReadPosRankSum=0.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:3,7:10:40.08:85,0,40
6    32522744    rs34415634    A    T    128.33    MQFilter40    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9468;MQ=33.42;MQ0=0;MQRankSum=0.747;QD=16.04;ReadPosRankSum=-0.747;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    0/1:1,7:8:3.64:157,0,4
6    32522761    rs36056484    A    C    102.76    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;MQRankSum=-0.731;QD=20.55;ReadPosRankSum=-0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DRB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411500    GT:AD:DP:GQ:PL    1/1:1,4:5:12.03:135,12,0
6    32546743    rs1064707    C    T    118.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=42.83;MQ0=0;QD=23.77;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:151,12,0
6    32546795    rs1064701    T    A    235.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.23;MQ0=0;QD=29.43;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:268,24,0
6    32546828    rs1064697    C    T    231.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=31.29;MQ0=0;QD=19.25;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,12:12:24.04:264,24,0
6    32546846    rs1064691    C    T    200.01    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.995;MQ=34.36;MQ0=0;MQRankSum=0.636;QD=13.33;ReadPosRankSum=-2.616;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:5,10:15:36.81:230,0,37
6    32546854    rs71730912    TG    T    469.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=294.8827;IndelType=D;MQ=36.49;MQ0=0;MQRankSum=0.0;QD=29.35;ReadPosRankSum=-1.735;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:1,15:16:3.14:509,3,0
6    32546866    rs9269693    T    C    456.04    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.87;MQ0=0;QD=25.34;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,18:18:45.04:489,45,0
6    32546918    rs9269694    G    A    297.03    MQFilter40    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=19;Dels=0.0;FS=2.932;HRun=0;HaplotypeScore=1.8907;MQ=33.17;MQ0=0;MQRankSum=0.65;QD=15.63;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:4,15:19:52.44:327,0,52
6    32546941    rs9269695    C    T    171.64    MQFilter40    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.4662;MQ=32.34;MQ0=0;MQRankSum=-0.296;QD=9.54;ReadPosRankSum=-0.789;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:5,13:18:86:202,0,86
6    32546953    rs9269697    G    A    55.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8675;MQ=26.82;MQ0=0;QD=3.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,15:15:9:88,9,0
6    32547921    .    A    AAGAC    618.51    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=119.2072;IndelType=I;MQ=23.8;MQ0=0;QD=47.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:4,9:9:27.09:661,27,0
6    32547947    rs9269741    C    A    40.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.31;MQ0=0;QD=2.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,11:14:6.02:72,6,0
6    32547982    rs41287240    G    A    326.51    MQFilter40;SnpCluster    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.767;DB;DP=30;Dels=0.0;FS=7.908;HRun=0;HaplotypeScore=1.9157;MQ=32.51;MQ0=1;MQRankSum=0.504;QD=10.88;ReadPosRankSum=1.338;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:13,17:30:99:357,0,294
6    32547988    rs9269742    T    C    301.91    MQFilter40;SnpCluster    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.927;DB;DP=29;Dels=0.0;FS=7.908;HRun=1;HaplotypeScore=2.8735;MQ=32.95;MQ0=1;MQRankSum=-0.209;QD=10.41;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:17,12:29:99:332,0,251
6    32547990    rs34691126    T    A    120.08    MQFilter40;SnpCluster    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=28;Dels=0.0;FS=8.28;HRun=0;HaplotypeScore=2.8735;MQ=33.08;MQ0=1;MQRankSum=-0.171;QD=4.29;ReadPosRankSum=0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:12,16:28:99:150,0,337
6    32547991    rs9269743    G    A    579.23    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8735;MQ=33.08;MQ0=1;QD=20.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,28:28:62.96:612,63,0
6    32547997    rs41287241    T    G    350.44    MQFilter40;SnpCluster    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=31;Dels=0.0;FS=11.634;HRun=0;HaplotypeScore=3.8469;MQ=32.44;MQ0=1;MQRankSum=1.393;QD=11.3;ReadPosRankSum=1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:16,15:31:99:380,0,329
6    32548026    rs9269744    G    C    307    MQFilter40    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=2.798;DB;DP=51;Dels=0.0;FS=14.994;HRun=0;HaplotypeScore=2.9296;MQ=33.04;MQ0=1;MQRankSum=1.286;QD=6.02;ReadPosRankSum=2.798;SNPEFF_AMINO_ACID_CHANGE=T262R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32548024_32548047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:37,14:51:99:337,0,632
6    32548066    rs9269745    G    T    142.82    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.515;DB;DP=42;Dels=0.0;FS=1.632;HRun=0;HaplotypeScore=7.9056;MQ=29.91;MQ0=1;MQRankSum=1.333;QD=3.4;ReadPosRankSum=-1.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:30,12:42:99:173,0,496
6    32548081    rs9269746    G    T    95.76    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.441;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=19.8912;MQ=30.94;MQ0=0;MQRankSum=1.785;QD=2.9;ReadPosRankSum=0.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:25,8:33:99:126,0,433
6    32548082    rs28732255    T    A    378.70    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.242;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.508;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.8697;MQ=30.94;MQ0=0;MQRankSum=-1.491;QD=11.48;ReadPosRankSum=-0.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:8,25:33:99:409,0,129
6    32548086    rs9269747    T    G    167.64    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=33;Dels=0.0;FS=5.076;HRun=1;HaplotypeScore=15.8481;MQ=30.94;MQ0=0;MQRankSum=2.022;QD=5.08;ReadPosRankSum=-1.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:19,14:33:99:198,0,332
6    32548101    rs3828830    C    T    106.59    MQFilter40    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.644;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.14;MQ0=0;MQRankSum=0.756;QD=3.81;ReadPosRankSum=0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:22,6:28:99:137,0,428
6    32548113    rs41287242    G    A    177.92    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9013;MQ=32.11;MQ0=0;MQRankSum=0.849;QD=6.59;ReadPosRankSum=-2.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:15,12:27:99:208,0,278
6    32548120    rs41287243    C    T    37.85    MQFilter40;QDFilter2    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.272;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9013;MQ=28.71;MQ0=0;MQRankSum=0.334;QD=1.65;ReadPosRankSum=-3.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:14,9:23:67.85:68,0,260
6    32548176    rs28732258    G    C    31.98    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9312;MQ=24.05;MQ0=0;MQRankSum=-0.143;QD=2.91;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:6,5:11:58.80:62,0,59
6    32548178    rs9269755    A    G    121.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.05;MQ0=0;QD=11.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,11:11:17.96:155,18,0
6    32548212    rs9269757    C    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=39.12;MQ0=0;QD=8.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,3:4:6.02:67,6,0
6    32548251    rs9269759    C    T    34.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=43.0;MQ0=0;MQRankSum=1.38;QD=5.71;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:4,2:6:64.27:64,0,91
6    32548272    rs9269760    T    C    37.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=45.28;MQ0=0;MQRankSum=1.231;QD=7.6;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:3,2:5:64.04:68,0,64
6    32548280    rs9269761    G    A    118.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=1.9966;MQ=45.28;MQ0=0;MQRankSum=0.731;QD=23.63;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:151,12,0
6    32548321    rs9269762    C    T    157.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9933;MQ=51.77;MQ0=0;QD=17.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,9:9:15.05:190,15,0
6    32548352    rs28732268    C    G    37.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.59;MQ0=0;MQRankSum=-1.932;QD=3.1;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:8,4:12:67.20:67,0,289
6    32548391    rs28732272    G    A    55.62    HaplotypeScoreFilter13    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=15.8718;MQ=42.29;MQ0=0;MQRankSum=-2.107;QD=3.09;ReadPosRankSum=1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:12,6:18:85.62:86,0,393
6    32548397    rs28732273    A    G    75.96    HaplotypeScoreFilter13    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=15.8917;MQ=40.44;MQ0=0;MQRankSum=-2.977;QD=4.22;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:8,10:18:99:106,0,266
6    32548399    rs111397688    A    AG    316.62    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=430.8443;IndelType=I;MQ=42.8;MQ0=0;MQRankSum=-3.552;QD=15.83;ReadPosRankSum=0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:11,9:20:99:356,0,292
6    32548426    rs28732278    T    C    252.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.431;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.6453;MQ=41.51;MQ0=0;MQRankSum=-5.021;QD=6.32;ReadPosRankSum=0.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:19,19:39:99:283,0,593
6    32548437    rs34985764    C    G    48.27    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7731;MQ=43.97;MQ0=0;MQRankSum=-2.655;QD=0.93;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:44,8:52:78.26:78,0,1224
6    32548456    .    TC    T    66.58    QDFilter2    AB=0.932;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DP=69;FS=0.0;HRun=2;HaplotypeScore=1142.6188;IndelType=D;MQ=44.46;MQ0=0;MQRankSum=-1.94;QD=0.96;ReadPosRankSum=1.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:64,5:69:99:106,0,2653
6    32548466    rs3830134    C    T    432.25    HaplotypeScoreFilter13    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=45.3645;MQ=45.42;MQ0=0;MQRankSum=3.604;QD=5.15;ReadPosRankSum=-1.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:63,21:84:99:462,0,1768
6    32548470    rs34705003    G    T    335.70    HaplotypeScoreFilter13    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.567;DB;DP=86;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=24.7582;MQ=45.46;MQ0=0;MQRankSum=-4.791;QD=3.9;ReadPosRankSum=-0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:64,22:86:99:366,0,1881
6    32548488    rs36116184    C    T    150.12    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=104;Dels=0.0;FS=4.597;HRun=0;HaplotypeScore=47.1988;MQ=46.61;MQ0=0;MQRankSum=-4.035;QD=1.44;ReadPosRankSum=-1.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:87,17:104:99:180,0,2487
6    32548489    rs28732280    C    G    86.94    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.865;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.116;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=47.1988;MQ=46.89;MQ0=0;MQRankSum=0.056;QD=0.84;ReadPosRankSum=1.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:90,14:104:99:117,0,2575
6    32548492    rs113472088    T    C    546.95    HaplotypeScoreFilter13;SnpCluster    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=106;Dels=0.0;FS=3.263;HRun=0;HaplotypeScore=62.1752;MQ=46.56;MQ0=0;MQRankSum=3.567;QD=5.16;ReadPosRankSum=0.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:78,28:106:99:577,0,2124
6    32548505    rs3828816    C    T    297.78    HaplotypeScoreFilter13;SnpCluster    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.58;DB;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=117.5817;MQ=45.88;MQ0=0;MQRankSum=0.634;QD=2.48;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:98,20:120:99:328,0,2799
6    32548507    rs3830130    C    A    2794.37    HaplotypeScoreFilter13;SnpCluster    AB=0.149;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.26;DB;DP=121;Dels=0.0;FS=1.36;HRun=0;HaplotypeScore=114.8124;MQ=46.01;MQ0=0;MQRankSum=1.731;QD=23.09;ReadPosRankSum=3.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:18,103:121:99:2824,0,264
6    32548513    rs3830129    G    A    165.58    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=2.666;DB;DP=130;Dels=0.0;FS=2.839;HRun=3;HaplotypeScore=98.017;MQ=46.15;MQ0=0;MQRankSum=-2.666;QD=1.27;ReadPosRankSum=-1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:112,18:130:99:196,0,3036
6    32548514    rs3830128    G    A    733.62    HaplotypeScoreFilter13;SnpCluster    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.428;DB;DP=132;Dels=0.0;FS=0.947;HRun=0;HaplotypeScore=97.0974;MQ=46.17;MQ0=0;MQRankSum=2.659;QD=5.56;ReadPosRankSum=1.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:97,34:132:99:764,0,2546
6    32548520    rs3830127    C    T    752.28    HaplotypeScoreFilter13;SnpCluster    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.299;DB;DP=145;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=41.4658;MQ=45.95;MQ0=0;MQRankSum=4.775;QD=5.19;ReadPosRankSum=1.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:110,35:145:99:782,0,2959
6    32548550    rs1059362    G    A    435.80    HaplotypeScoreFilter13    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=191;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=89.1246;MQ=45.76;MQ0=0;MQRankSum=-1.201;QD=2.28;ReadPosRankSum=0.564;SNPEFF_AMINO_ACID_CHANGE=L246;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32548523_32548633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:157,34:191:99:466,0,4236
6    32548556    rs3830125    C    T    38.87    HaplotypeScoreFilter13;QDFilter2    AB=0.891;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.035;DB;DP=202;Dels=0.0;FS=2.106;HRun=0;HaplotypeScore=40.8308;MQ=45.61;MQ0=0;MQRankSum=-1.268;QD=0.19;ReadPosRankSum=2.236;SNPEFF_AMINO_ACID_CHANGE=A244T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32548523_32548633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:180,22:202:68.86:69,0,4952
6    32548628    rs34624872    G    A    315.66    QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=3.047;DB;DP=169;Dels=0.0;FS=2.687;HRun=0;HaplotypeScore=8.3118;MQ=41.28;MQ0=0;MQRankSum=-3.887;QD=1.87;ReadPosRankSum=-1.382;SNPEFF_AMINO_ACID_CHANGE=R220W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32548523_32548633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:134,35:169:99:346,0,3730
6    32548641    .    A    T    38.77    HaplotypeScoreFilter13;QDFilter2    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.277;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=31.6922;MQ=40.21;MQ0=0;MQRankSum=-2.849;QD=0.26;ReadPosRankSum=-0.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:129,22:151:68.77:69,0,3532
6    32548648    rs28732281    C    A    192.28    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=132;Dels=0.0;FS=1.934;HRun=1;HaplotypeScore=65.4666;MQ=37.62;MQ0=0;MQRankSum=-2.168;QD=1.46;ReadPosRankSum=-1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:103,28:132:99:222,0,2681
6    32548652    rs28732282    T    A    56.59    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=125;Dels=0.0;FS=2.046;HRun=0;HaplotypeScore=154.498;MQ=36.56;MQ0=0;MQRankSum=-2.609;QD=0.45;ReadPosRankSum=-1.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:96,28:125:86.59:87,0,2345
6    32548656    rs72508181    GTGA    G    934.72    PASS    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=108;FS=0.0;HRun=0;HaplotypeScore=2265.6889;IndelType=D;MQ=35.94;MQ0=0;MQRankSum=-0.245;QD=8.27;ReadPosRankSum=1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:90,23:108:99:974,0,2607
6    32548660    rs74368819    T    C    577.88    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.175;DB;DP=109;Dels=0.0;FS=4.035;HRun=0;HaplotypeScore=253.5612;MQ=35.54;MQ0=0;MQRankSum=0.729;QD=5.3;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:83,26:109:99:608,0,812
6    32548661    rs28732283    G    T    218.01    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=4.624;DB;DP=107;Dels=0.0;FS=19.403;HRun=3;HaplotypeScore=199.9631;MQ=35.29;MQ0=0;MQRankSum=-0.53;QD=2.04;ReadPosRankSum=-1.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:69,38:107:99:248,0,1152
6    32548662    rs34368612    T    C    185.35    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.183;DB;DP=101;Dels=0.0;FS=9.881;HRun=0;HaplotypeScore=129.305;MQ=35.19;MQ0=0;MQRankSum=1.602;QD=1.82;ReadPosRankSum=-1.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:84,17:101:99:215,0,1618
6    32548681    rs9269764    T    C    1140.82    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=50.6524;MQ=32.24;MQ0=0;QD=12.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:1,89:90:99:1174,108,0
6    32548686    rs3830122    C    A    1314.54    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=69.2961;MQ=31.42;MQ0=0;QD=14.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:1,87:88:99:1348,120,0
6    32548691    rs28732289    G    C    50.35    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.845;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.958;DB;DP=84;Dels=0.0;FS=2.297;HRun=0;HaplotypeScore=71.3306;MQ=31.33;MQ0=0;MQRankSum=-0.012;QD=0.6;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:71,13:84:80.34:80,0,1030
6    32548694    rs28732290    T    C    90.06    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=78;Dels=0.0;FS=15.523;HRun=1;HaplotypeScore=63.5968;MQ=30.94;MQ0=0;MQRankSum=0.431;QD=1.15;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:36,30:78:99:120,0,810
6    32548697    rs28732291    A    G    31.96    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=5.677;DB;DP=76;Dels=0.0;FS=10.819;HRun=0;HaplotypeScore=61.647;MQ=30.99;MQ0=0;MQRankSum=-0.498;QD=0.42;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:50,26:76:61.95:62,0,897
6    32548703    rs9269766    T    C    1024.37    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=43.5764;MQ=29.9;MQ0=0;QD=15.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,67:67:96.19:1057,96,0
6    32548722    rs9269767    C    A    617.77    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=29.7286;MQ=28.53;MQ0=0;QD=11.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,45:53:60.11:651,60,0
6    32548727    rs9269768    A    G    578.70    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=40.7102;MQ=27.52;MQ0=0;QD=11.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,50:50:57.10:612,57,0
6    32548734    rs9269771    T    C    411.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=12.9218;MQ=27.86;MQ0=0;QD=11.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,36:36:42.06:445,42,0
6    32548763    rs9269772    A    T    350.69    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=33.0865;MQ=30.97;MQ0=0;QD=12.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,18:27:36.07:384,36,0
6    32548777    rs28732297    A    T    64.63    HaplotypeScoreFilter13;MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.639;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=15.1086;MQ=31.72;MQ0=0;MQRankSum=-2.238;QD=2.81;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:16,7:23:94.62:95,0,278
6    32548786    rs9269773    T    C    396.31    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.4079;MQ=32.11;MQ0=0;QD=19.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,20:20:39.10:429,39,0
6    32548802    rs9269774    G    A    171.17    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=17.1452;MQ=32.63;MQ0=0;QD=10.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,17:17:21.02:204,21,0
6    32548804    rs9269775    C    G    166.38    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=15.2306;MQ=32.63;MQ0=0;QD=9.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,17:17:21.02:199,21,0
6    32548809    rs6938892    A    C    67.29    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.602;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=18.5355;MQ=34.72;MQ0=0;MQRankSum=-0.159;QD=3.74;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:14,4:18:97.28:97,0,239
6    32548811    rs28732299    A    G    43.01    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.065;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=18.3339;MQ=34.72;MQ0=0;MQRankSum=-1.555;QD=2.39;ReadPosRankSum=-0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:10,8:18:73.01:73,0,270
6    32548838    .    C    A    76.66    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=35.35;MQ0=0;MQRankSum=-0.597;QD=6.39;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:8,4:12:99:107,0,153
6    32548870    rs34194375    C    A    85.55    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=39.12;MQ0=0;MQRankSum=-0.421;QD=10.69;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:4,4:8:99:116,0,115
6    32548896    rs9269778    A    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=47.12;MQ0=0;QD=10.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,2:4:6.02:75,6,0
6    32548920    rs9269779    A    G    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=25.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
6    32549121    rs9269791    T    C    85.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
6    32549128    rs9269792    C    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
6    32549236    rs9269793    T    G    878.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8361;MQ=27.24;MQ0=0;QD=15.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,55:55:90:911,90,0
6    32549249    rs9269794    G    C    336.84    MQFilter40    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.421;DB;DP=67;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=10.5205;MQ=24.9;MQ0=0;MQRankSum=-0.672;QD=5.03;ReadPosRankSum=0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:35,32:67:99:367,0,487
6    32549259    rs34832942    G    A    1227.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.6951;MQ=24.87;MQ0=0;QD=15.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,78:78:99:1261,120,0
6    32549278    rs9269796    T    G    566.16    HaplotypeScoreFilter13;MQFilter40    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=93;Dels=0.0;FS=18.451;HRun=0;HaplotypeScore=13.4763;MQ=22.2;MQ0=6;MQRankSum=-0.157;QD=6.09;ReadPosRankSum=-1.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:44,49:93:99:596,0,531
6    32549284    rs35524092    G    A    1306.74    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=24.9916;MQ=21.05;MQ0=7;QD=13.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,94:94:99:1340,129,0
6    32549296    rs9269798    A    G    1352.02    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.8668;MQ=22.23;MQ0=7;MQRankSum=0.309;QD=13.66;ReadPosRankSum=1.252;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:7,92:99:99:1385,116,0
6    32549310    rs35464026    T    G    59.73    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=119;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=53.018;MQ=22.77;MQ0=12;MQRankSum=-1.751;QD=0.5;ReadPosRankSum=-1.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:93,26:119:89.73:90,0,1326
6    32549313    rs76314531    G    T    1162.64    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=0.137;DB;DP=123;Dels=0.0;FS=3.346;HRun=0;HaplotypeScore=54.9322;MQ=22.48;MQ0=14;MQRankSum=-0.871;QD=9.45;ReadPosRankSum=2.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:19,104:123:99:1193,0,173
6    32549317    rs41292734    G    A    64.68    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.862;DB;DP=126;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=25.3893;MQ=22.6;MQ0=14;MQRankSum=-2.496;QD=0.51;ReadPosRankSum=-1.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:102,24:126:94.68:95,0,1386
6    32549345    rs35837054    G    GCA    126.23    QDFilter2    AB=0.946;AC=1;AF=0.50;AN=2;BaseQRankSum=3.722;DB;DP=90;FS=11.171;HRun=0;HaplotypeScore=1853.6387;IndelType=I;MQ=23.71;MQ0=14;MQRankSum=0.882;QD=0.79;ReadPosRankSum=0.679;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:150,9:90:99:165,0,3535
6    32549359    rs1059705    C    T    353.63    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.854;DB;DP=182;Dels=0.0;FS=16.482;HRun=1;HaplotypeScore=147.3473;MQ=25.45;MQ0=15;MQRankSum=-2.054;QD=1.94;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=V209;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:138,44:182:99:384,0,1523
6    32549383    rs111866063    G    A    558.55    HaplotypeScoreFilter13;MQFilter40    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=3.091;DB;DP=231;Dels=0.0;FS=19.446;HRun=1;HaplotypeScore=63.2059;MQ=26.36;MQ0=16;MQRankSum=-1.896;QD=2.41;ReadPosRankSum=2.997;SNPEFF_AMINO_ACID_CHANGE=T201;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:171,58:231:99:589,0,2140
6    32549392    rs16822972    C    T    40.51    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DB;DP=237;Dels=0.0;FS=12.125;HRun=1;HaplotypeScore=117.4818;MQ=25.49;MQ0=22;MQRankSum=0.132;QD=0.17;ReadPosRankSum=-1.467;SNPEFF_AMINO_ACID_CHANGE=E198;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:215,22:237:70.50:71,0,2671
6    32549398    rs67687262    AC    A    95.51    QDFilter2    AB=0.927;AC=1;AF=0.50;AN=2;BaseQRankSum=1.764;DB;DP=133;FS=20.242;HRun=2;HaplotypeScore=2018.6193;IndelType=D;MQ=25.48;MQ0=24;MQRankSum=1.537;QD=0.39;ReadPosRankSum=-0.896;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:223,19:133:99:135,0,4206
6    32549401    rs16822974    T    C    2564.56    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=245;Dels=0.0;FS=17.453;HRun=1;HaplotypeScore=42.4346;MQ=25.39;MQ0=24;MQRankSum=-1.869;QD=10.47;ReadPosRankSum=2.381;SNPEFF_AMINO_ACID_CHANGE=R195;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:19,225:245:52.52:2598,53,0
6    32549402    .    C    CT    743.02    PASS    AB=0.929;AC=1;AF=0.50;AN=2;BaseQRankSum=1.698;DP=136;DS;FS=27.057;HRun=2;HaplotypeScore=2019.1681;IndelType=I;MQ=25.31;MQ0=23;MQRankSum=0.803;QD=2.97;ReadPosRankSum=-2.598;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:231,19:136:99:782,0,3161
6    32549416    rs16822692    C    T    397.39    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=0.136;DB;DP=250;DS;Dels=0.0;FS=14.559;HRun=0;HaplotypeScore=19.8072;MQ=25.94;MQ0=24;MQRankSum=-2.206;QD=1.59;ReadPosRankSum=1.489;SNPEFF_AMINO_ACID_CHANGE=L190;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:188,62:250:99:427,0,2759
6    32549452    rs113627837    C    G    920.67    HaplotypeScoreFilter13;MQFilter40    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.976;DB;DP=237;DS;Dels=0.0;FS=22.834;HRun=0;HaplotypeScore=34.8439;MQ=25.59;MQ0=27;MQRankSum=1.205;QD=3.88;ReadPosRankSum=-0.575;SNPEFF_AMINO_ACID_CHANGE=Q178H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:132,64:237:99:951,0,1818
6    32549475    rs2308768    T    C    2541.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=192;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=23.47;MQ0=31;QD=13.24;SNPEFF_AMINO_ACID_CHANGE=M171V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,191:192:99:2574,234,0
6    32549481    rs112408735    C    T    597.72    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.256;DB;DP=200;DS;Dels=0.0;FS=0.844;HRun=0;HaplotypeScore=0.8321;MQ=26.04;MQ0=25;MQRankSum=-1.818;QD=2.99;ReadPosRankSum=-0.285;SNPEFF_AMINO_ACID_CHANGE=A169T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:122,78:200:99:628,0,1772
6    32549497    rs141046291    G    A    1638.82    HaplotypeScoreFilter13;MQFilter40    AB=0.401;AC=1;AF=0.50;AN=2;BaseQRankSum=2.405;DB;DP=193;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=55.1506;MQ=28.77;MQ0=15;MQRankSum=0.24;QD=8.49;ReadPosRankSum=-0.557;SNPEFF_AMINO_ACID_CHANGE=N163;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:77,115:193:99:1669,0,1085
6    32549501    rs78466762    A    C    2284.57    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=185;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=56.14;MQ=29.32;MQ0=15;QD=12.35;SNPEFF_AMINO_ACID_CHANGE=L162R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,137:185:99:2318,210,0
6    32549525    rs111965977    C    G    173.77    MQFilter40;QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=1.975;DB;DP=181;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=31.14;MQ0=8;MQRankSum=0.431;QD=0.96;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=G154A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:158,23:181:99:204,0,3041
6    32549531    rs112796209    T    C    187.76    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=2.911;DB;DP=169;DS;Dels=0.0;FS=1.423;HRun=0;HaplotypeScore=19.8005;MQ=31.84;MQ0=7;MQRankSum=0.145;QD=1.11;ReadPosRankSum=-0.455;SNPEFF_AMINO_ACID_CHANGE=Y152C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:145,23:169:99:218,0,2912
6    32549540    rs116633902    C    T    195.42    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.885;AC=1;AF=0.50;AN=2;BaseQRankSum=2.864;DB;DP=165;Dels=0.0;FS=6.074;HRun=1;HaplotypeScore=38.5132;MQ=31.91;MQ0=5;MQRankSum=1.788;QD=1.18;ReadPosRankSum=1.287;SNPEFF_AMINO_ACID_CHANGE=S149N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:146,19:165:99:225,0,2872
6    32549548    rs112201403    G    A    754.70    HaplotypeScoreFilter13;MQFilter40    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.073;DB;DP=144;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=17.7748;MQ=32.55;MQ0=5;MQRankSum=1.072;QD=5.24;ReadPosRankSum=1.319;SNPEFF_AMINO_ACID_CHANGE=C146;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:102,42:144:99:785,0,1926
6    32549579    rs67245200    TG    T    152.33    QDFilter2    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=67;FS=0.0;HRun=3;HaplotypeScore=920.7582;IndelType=D;MQ=33.05;MQ0=0;MQRankSum=-1.349;QD=1.57;ReadPosRankSum=-0.172;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:78,19:67:99:191,0,1822
6    32549588    .    G    A    117.57    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.24;DP=86;Dels=0.0;FS=2.392;HRun=2;HaplotypeScore=80.6194;MQ=31.0;MQ0=0;MQRankSum=0.739;QD=1.37;ReadPosRankSum=-1.838;SNPEFF_AMINO_ACID_CHANGE=S133L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:73,13:86:99:148,0,1314
6    32549596    rs111823233    T    C    1319.95    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=21.7381;MQ=30.12;MQ0=0;QD=16.5;SNPEFF_AMINO_ACID_CHANGE=V130;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,80:80:99:1353,114,0
6    32549611    rs1071752    T    A    305.29    HaplotypeScoreFilter13;MQFilter40    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.997;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=21.2874;MQ=28.66;MQ0=0;MQRankSum=0.035;QD=5.65;ReadPosRankSum=-0.595;SNPEFF_AMINO_ACID_CHANGE=Q125H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32549334_32549615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:23,31:54:99:335,0,341
6    32549625    .    A    G    67.96    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.953;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=45.3223;MQ=20.4;MQ0=0;MQRankSum=0.24;QD=1.89;ReadPosRankSum=1.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:25,11:36:94.14:98,0,94
6    32549630    rs62893961    AC    A    161.25    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DB;DP=15;FS=6.021;HRun=1;HaplotypeScore=381.1614;IndelType=D;MQ=20.1;MQ0=0;MQRankSum=0.718;QD=4.61;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:24,11:15:4.06:200,0,4
6    32549654    rs63211460    AC    A    125.76    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=15;FS=0.0;HRun=1;HaplotypeScore=376.133;IndelType=D;MQ=20.67;MQ0=0;MQRankSum=-0.674;QD=4.06;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:22,9:15:99:165,0,435
6    32549681    rs9269813    G    T    44.74    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.159;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.8031;MQ=17.81;MQ0=1;MQRankSum=0.29;QD=3.44;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:1,12:13:8.97:77,9,0
6    32551853    rs9269938    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
6    32551938    rs16822512    G    A    34.50    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.9367;MQ=26.8;MQ0=0;MQRankSum=0.248;QD=3.83;ReadPosRankSum=1.203;SNPEFF_AMINO_ACID_CHANGE=T106;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:6,3:9:64.49:64,0,143
6    32551939    rs9269941    G    T    101.37    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.9334;MQ=26.8;MQ0=0;MQRankSum=-0.248;QD=11.26;ReadPosRankSum=1.422;SNPEFF_AMINO_ACID_CHANGE=T106N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:3,6:9:76.26:131,0,76
6    32551995    rs17853229    A    G    322.01    HaplotypeScoreFilter13;MQFilter40    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.802;DB;DP=25;Dels=0.0;FS=6.264;HRun=1;HaplotypeScore=13.3429;MQ=30.42;MQ0=0;MQRankSum=0.708;QD=12.88;ReadPosRankSum=-3.652;SNPEFF_AMINO_ACID_CHANGE=A87;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:9,16:25:99:352,0,161
6    32551998    rs17853228    G    A    257.75    HaplotypeScoreFilter13;MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.3429;MQ=30.37;MQ0=0;MQRankSum=1.774;QD=9.91;ReadPosRankSum=-2.186;SNPEFF_AMINO_ACID_CHANGE=D86;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:14,12:26:99:288,0,253
6    32552016    rs17880973    C    A    119.33    MQFilter40    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.14;MQ0=0;MQRankSum=-2.546;QD=3.73;ReadPosRankSum=1.501;SNPEFF_AMINO_ACID_CHANGE=T80;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:23,9:32:99:149,0,508
6    32552029    rs17884945    A    T    57.36    MQFilter40;QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=32;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=5.9152;MQ=34.14;MQ0=0;MQRankSum=-1.183;QD=1.79;ReadPosRankSum=-1.521;SNPEFF_AMINO_ACID_CHANGE=F76Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:26,6:32:87.36:87,0,533
6    32552039    rs150747106    C    T    108.60    MQFilter40    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9152;MQ=34.14;MQ0=0;MQRankSum=-2.221;QD=3.39;ReadPosRankSum=-3.563;SNPEFF_AMINO_ACID_CHANGE=V73M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:23,9:32:99:139,0,529
6    32552048    rs56158521    C    T    97.66    MQFilter40    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=1.928;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.14;MQ0=0;MQRankSum=-2.054;QD=3.05;ReadPosRankSum=-4.066;SNPEFF_AMINO_ACID_CHANGE=D70N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:23,9:32:99:128,0,532
6    32552059    rs17883134    G    T    384.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8351;MQ=36.35;MQ0=0;QD=14.79;SNPEFF_AMINO_ACID_CHANGE=S66Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,21:26:39.03:418,39,0
6    32552060    rs16822820    A    T    310.34    MQFilter40    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=2.519;DB;DP=26;Dels=0.0;FS=5.842;HRun=0;HaplotypeScore=7.8351;MQ=36.35;MQ0=0;MQRankSum=2.576;QD=11.94;ReadPosRankSum=-0.651;SNPEFF_AMINO_ACID_CHANGE=S66T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:9,17:26:99:340,0,111
6    32552075    rs1064664    A    G    438.35    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.7792;MQ=32.02;MQ0=0;MQRankSum=1.37;QD=21.92;ReadPosRankSum=1.465;SNPEFF_AMINO_ACID_CHANGE=Y61H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:4,16:20:45.02:471,45,0
6    32552085    rs1059575    G    C    68.62    HaplotypeScoreFilter13;MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=23.4022;MQ=31.88;MQ0=0;MQRankSum=-1.528;QD=3.27;ReadPosRankSum=1.107;SNPEFF_AMINO_ACID_CHANGE=D57E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32551886_32552155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:12,5:21:98.61:99,0,278
6    32557253    rs9270278    C    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=25.63;MQ0=0;QD=5.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,6:6:6.02:67,6,0
6    32557259    rs28366212    C    T    34.69    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=25.63;MQ0=0;MQRankSum=-0.731;QD=5.78;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:1,5:6:6.02:66,6,0
6    32557267    rs9270281    A    G    89.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.97;MQ=25.18;MQ0=0;QD=11.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,8:8:12.01:122,12,0
6    32557271    rs9270282    A    T    46.55    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9916;MQ=26.14;MQ0=0;MQRankSum=-0.922;QD=6.65;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:2,5:7:21.43:77,0,21
6    32557290    rs9281897    A    AT    148.47    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=316.9183;IndelType=I;MQ=25.63;MQ0=0;MQRankSum=-0.684;QD=16.5;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:4,5:9:85.96:188,0,86
6    32557290    .    A    C    56.50    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=6.9883;MQ=25.63;MQ0=0;MQRankSum=0.729;QD=6.28;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:5,4:9:9:89,9,0
6    32557321    rs17204659    C    T    73.91    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.009;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.8404;MQ=29.94;MQ0=0;MQRankSum=-0.745;QD=3.89;ReadPosRankSum=-1.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:13,6:19:99:104,0,318
6    32557322    rs78836800    G    C    98.70    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.731;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=18.8404;MQ=29.18;MQ0=1;MQRankSum=0.417;QD=4.94;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:15,5:20:99:129,0,263
6    32557328    rs28366217    A    C    64.88    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.94;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.839;MQ=29.57;MQ0=1;MQRankSum=-0.705;QD=2.82;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:18,5:23:94.87:95,0,412
6    32557356    .    A    G    66.10    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.103;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=31.2791;MQ=27.84;MQ0=2;MQRankSum=-1.83;QD=1.69;ReadPosRankSum=-2.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:29,10:39:96.09:96,0,636
6    32557365    rs35574533    A    C    174.46    HaplotypeScoreFilter13;MQFilter40    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.854;DB;DP=38;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=53.6251;MQ=27.81;MQ0=2;MQRankSum=1.572;QD=4.59;ReadPosRankSum=0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:27,11:38:99:204,0,505
6    32557374    rs28366218    A    T    102.13    HaplotypeScoreFilter13;MQFilter40    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=1.471;DB;DP=42;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=50.5841;MQ=27.93;MQ0=2;MQRankSum=0.355;QD=2.43;ReadPosRankSum=0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:34,8:42:99:132,0,641
6    32557375    .    T    TA    214.67    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.095;DP=36;FS=4.15;HRun=1;HaplotypeScore=849.9619;IndelType=I;MQ=27.93;MQ0=2;MQRankSum=0.573;QD=5.11;ReadPosRankSum=0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:30,12:36:99:254,0,768
6    32557405    rs9270296    G    A    1068.05    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=39.3475;MQ=27.04;MQ0=2;QD=18.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,48:59:99:1101,111,0
6    32557414    .    A    T    78.69    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.343;DP=62;Dels=0.0;FS=8.98;HRun=0;HaplotypeScore=87.2265;MQ=25.61;MQ0=2;MQRankSum=-0.18;QD=1.27;ReadPosRankSum=0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:36,12:62:99:109,0,636
6    32557419    .    C    T    144.38    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=0.961;DP=62;Dels=0.0;FS=4.383;HRun=0;HaplotypeScore=73.2087;MQ=25.61;MQ0=2;MQRankSum=0.031;QD=2.33;ReadPosRankSum=-2.14;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:42,13:62:99:174,0,752
6    32557422    rs17879746    C    T    258.01    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=67.1019;MQ=26.12;MQ0=1;MQRankSum=1.052;QD=3.85;ReadPosRankSum=2.784;SNPEFF_AMINO_ACID_CHANGE=R33Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:50,17:67:99:288,0,808
6    32557435    rs9270299    A    C    1600.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=27.99;MQ0=0;QD=20.01;SNPEFF_AMINO_ACID_CHANGE=S29A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,80:80:99:1633,165,0
6    32557449    rs187619904    G    A    284.39    MQFilter40    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.829;DB;DP=94;Dels=0.0;FS=4.525;HRun=1;HaplotypeScore=10.8142;MQ=30.12;MQ0=0;MQRankSum=2.468;QD=3.03;ReadPosRankSum=-2.966;SNPEFF_AMINO_ACID_CHANGE=S24F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:72,22:94:99:314,0,1569
6    32557478    rs9270301    C    A    1043.57    HaplotypeScoreFilter13;MQFilter40    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=4.372;DB;DP=101;Dels=0.0;FS=1.051;HRun=0;HaplotypeScore=26.6031;MQ=30.35;MQ0=0;MQRankSum=-0.431;QD=10.33;ReadPosRankSum=-2.622;SNPEFF_AMINO_ACID_CHANGE=A14;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:49,51:101:99:1074,0,1056
6    32557483    rs78246137    T    C    2701.57    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=30.5465;MQ=30.39;MQ0=0;QD=27.29;SNPEFF_AMINO_ACID_CHANGE=T13A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,98:99:99:2735,258,0
6    32557506    rs707953    T    C    518.95    HaplotypeScoreFilter13;MQFilter40    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DB;DP=85;Dels=0.0;FS=1.299;HRun=1;HaplotypeScore=15.3824;MQ=31.3;MQ0=0;MQRankSum=-0.489;QD=6.11;ReadPosRankSum=1.079;SNPEFF_AMINO_ACID_CHANGE=K5R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:59,26:85:99:549,0,1534
6    32557534    rs138717279    C    A    349.65    HaplotypeScoreFilter13;MQFilter40    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.584;DB;DP=55;Dels=0.0;FS=6.594;HRun=1;HaplotypeScore=22.6085;MQ=31.46;MQ0=0;MQRankSum=1.64;QD=6.36;ReadPosRankSum=-1.436;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:39,16:55:99:380,0,714
6    32557552    rs1059546    A    G    105.69    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=44.8849;MQ=26.59;MQ0=1;QD=3.91;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:0,15:27:14.96:138,15,0
6    32557568    .    C    CAT    179.46    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.02;DP=16;FS=0.0;HRun=0;HaplotypeScore=456.978;IndelType=I;MQ=25.42;MQ0=1;MQRankSum=0.453;QD=8.97;ReadPosRankSum=1.586;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:15,5:16:99:218,0,453
6    32557617    rs72500543    G    T    32.39    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.8534;MQ=21.97;MQ0=2;MQRankSum=-0.143;QD=2.31;ReadPosRankSum=-0.143;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_32557420_32557625;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:8,5:13:62.38:62,0,89
6    32557643    rs9270317    G    A    87.35    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9202;MQ=20.63;MQ0=1;MQRankSum=-0.751;QD=8.73;ReadPosRankSum=0.751;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    1/1:2,8:10:14.93:120,15,0
6    32557655    rs34233531    C    A    80.91    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=20.63;MQ0=1;MQRankSum=0.0;QD=8.09;ReadPosRankSum=-0.361;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:5,5:10:34.15:111,0,34
6    32557668    rs9270319    C    G    43.55    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9168;MQ=21.44;MQ0=1;MQRankSum=1.754;QD=5.44;ReadPosRankSum=0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360004    GT:AD:DP:GQ:PL    0/1:5,3:8:40.11:74,0,40
6    32605207    rs3187964    C    G    105.60    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=20;Dels=0.0;FS=6.039;HRun=0;HaplotypeScore=0.0;MQ=53.81;MQ0=0;MQRankSum=-2.433;QD=5.28;ReadPosRankSum=1.526;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495840    GT:AD:DP:GQ:PL    0/1:14,6:20:99:136,0,340
6    32605234    rs28383345    G    A    136.47    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=22;Dels=0.0;FS=4.561;HRun=1;HaplotypeScore=0.0;MQ=51.8;MQ0=0;MQRankSum=-2.871;QD=6.2;ReadPosRankSum=0.935;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460633    GT:AD:DP:GQ:PL    0/1:13,9:22:99:166,0,403
6    32605257    rs74705834    C    A    123.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.139;DB;DP=25;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=0.0;MQ=52.85;MQ0=0;MQRankSum=-3.19;QD=4.92;ReadPosRankSum=-0.638;SNPEFF_AMINO_ACID_CHANGE=L8M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32605134_32605317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:15,10:25:99:153,0,496
6    32605274    rs80318326    T    C    60.93    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=52.98;MQ0=0;MQRankSum=-2.421;QD=2.65;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=A13;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32605134_32605317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:15,8:23:90.92:91,0,548
6    32605295    rs9272433    C    T    76.06    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.771;DB;DP=23;Dels=0.0;FS=2.046;HRun=1;HaplotypeScore=0.6651;MQ=54.18;MQ0=0;MQRankSum=-2.973;QD=3.31;ReadPosRankSum=-0.969;SNPEFF_AMINO_ACID_CHANGE=P20;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32605134_32605317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:16,7:23:99:106,0,567
6    32605326    rs28383346    A    G    43.16    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=14;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.8667;MQ=56.07;MQ0=0;MQRankSum=-1.485;QD=3.08;ReadPosRankSum=-0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:10,4:14:73.16:73,0,352
6    32605336    rs9272435    G    A    60.50    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=1.6006;MQ=52.62;MQ0=0;MQRankSum=-1.398;QD=5.5;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:7,4:11:90.50:90,0,216
6    32605400    rs9272442    C    T    33.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.04;MQ0=0;MQRankSum=-1.754;QD=4.81;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:4,3:7:63.68:64,0,144
6    32605501    rs9272451    C    G    84.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
6    32605508    rs113131349    G    T    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
6    32609009    rs34130005    T    G    512.97    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=23;Dels=0.0;FS=4.337;HRun=1;HaplotypeScore=0.0;MQ=52.54;MQ0=0;MQRankSum=3.708;QD=22.3;ReadPosRankSum=0.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:7,16:23:99:543,0,135
6    32609038    rs28383438    C    T    116.33    SnpCluster    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.08;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7005;MQ=54.49;MQ0=0;MQRankSum=-4.262;QD=3.32;ReadPosRankSum=0.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:27,8:35:99:146,0,828
6    32609042    rs28383439    C    A    134.46    SnpCluster    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.746;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=53.98;MQ0=0;MQRankSum=-4.721;QD=3.28;ReadPosRankSum=0.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:31,10:41:99:164,0,933
6    32609046    rs28383440    C    T    141.51    SnpCluster    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=1.113;DB;DP=46;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=1.7005;MQ=53.78;MQ0=0;MQRankSum=-5.116;QD=3.08;ReadPosRankSum=0.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:34,12:46:99:172,0,886
6    32609047    rs34857804    C    T    828.71    SnpCluster    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.889;DB;DP=46;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=2.4892;MQ=53.78;MQ0=0;MQRankSum=5.091;QD=18.02;ReadPosRankSum=-0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:12,34:46:99:859,0,196
6    32609056    rs28383441    C    T    188.72    SnpCluster    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.07;MQ0=0;MQRankSum=-5.456;QD=3.77;ReadPosRankSum=-1.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:36,14:50:99:219,0,1074
6    32609105    rs78025123    G    A    122.64    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.294;DB;DP=48;Dels=0.0;FS=7.405;HRun=0;HaplotypeScore=0.8321;MQ=52.87;MQ0=0;MQRankSum=-5.268;QD=2.55;ReadPosRankSum=1.772;SNPEFF_AMINO_ACID_CHANGE=C34Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32609087_32609335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:35,13:48:99:153,0,1103
6    32609106    rs3205916    T    C    122.64    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=48;Dels=0.0;FS=7.405;HRun=0;HaplotypeScore=1.4972;MQ=52.87;MQ0=0;MQRankSum=-5.268;QD=2.55;ReadPosRankSum=2.01;SNPEFF_AMINO_ACID_CHANGE=C34;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32609087_32609335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:35,13:48:99:153,0,1075
6    32609126    rs80027061    T    C    166.49    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=44;Dels=0.0;FS=2.21;HRun=0;HaplotypeScore=0.0;MQ=52.77;MQ0=0;MQRankSum=-5.05;QD=3.78;ReadPosRankSum=1.476;SNPEFF_AMINO_ACID_CHANGE=F41S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32609087_32609335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:32,12:44:99:196,0,994
6    32609147    rs12722051    A    T    88.48    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=51.97;MQ0=0;MQRankSum=-4.411;QD=2.53;ReadPosRankSum=-1.757;SNPEFF_AMINO_ACID_CHANGE=Y48F;SNPEFF_CODON_CHANGE=tAc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32609087_32609335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:25,10:35:99:118,0,785
6    32609371    rs4467816    T    C    1014    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    1/1:0,32:32:78.24:1047,78,0
6    32609425    rs4457200    C    G    526.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:559,42,0
6    32609746    rs9272744    C    T    140.92    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DB;DP=26;Dels=0.0;FS=5.618;HRun=0;HaplotypeScore=1.2434;MQ=52.49;MQ0=1;MQRankSum=-1.906;QD=5.42;ReadPosRankSum=0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:18,8:26:99:171,0,625
6    32609813    rs707951    T    C    436.96    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=44;Dels=0.0;FS=4.837;HRun=0;HaplotypeScore=0.0;MQ=52.08;MQ0=0;MQRankSum=-3.681;QD=9.93;ReadPosRankSum=3.078;SNPEFF_AMINO_ACID_CHANGE=I132;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32609749_32610030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:28,16:44:99:467,0,939
6    32609855    rs1048173    A    C    230.31    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.394;DB;DP=48;Dels=0.0;FS=3.289;HRun=1;HaplotypeScore=0.9997;MQ=54.55;MQ0=1;MQRankSum=-3.354;QD=4.8;ReadPosRankSum=-3.279;SNPEFF_AMINO_ACID_CHANGE=T146;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32609749_32610030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:36,12:48:99:260,0,1162
6    32610008    rs2308890    C    T    596.80    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.176;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.05;MQ0=0;MQRankSum=-4.101;QD=8.06;ReadPosRankSum=0.425;SNPEFF_AMINO_ACID_CHANGE=D197;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32609749_32610030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:46,28:74:99:627,0,1426
6    32610009    rs75833253    C    G    598.23    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=2.201;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.84;MQ0=0;MQRankSum=-3.94;QD=7.98;ReadPosRankSum=0.697;SNPEFF_AMINO_ACID_CHANGE=Q198E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32609749_32610030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:47,28:75:99:628,0,1421
6    32610047    rs112177498    T    C    493.34    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=2.667;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6918;MQ=50.61;MQ0=0;MQRankSum=-4.389;QD=8.66;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:37,20:57:99:523,0,1074
6    32610059    rs34843907    T    G    410.80    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.293;DB;DP=50;Dels=0.0;FS=1.186;HRun=0;HaplotypeScore=0.0;MQ=49.83;MQ0=0;MQRankSum=-4.457;QD=8.22;ReadPosRankSum=-1.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:32,18:50:99:441,0,997
6    32610099    .    TC    T    119.58    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=3.595;DP=27;FS=0.0;HRun=2;HaplotypeScore=190.3755;IndelType=D;MQ=51.96;MQ0=0;MQRankSum=-3.659;QD=4.43;ReadPosRankSum=1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:20,7:27:99:159,0,780
6    32610270    rs9272776    T    C    113.43    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.853;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.33;MQ0=0;MQRankSum=-3.645;QD=5.67;ReadPosRankSum=0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:13,7:20:99:143,0,458
6    32610277    rs28383466    A    G    116.46    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.35;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.69;MQ0=0;MQRankSum=-3.742;QD=5.82;ReadPosRankSum=-0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:12,8:20:99:146,0,396
6    32610282    rs75400268    T    A    177.30    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.879;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.75;MQ0=0;MQRankSum=-3.989;QD=7.71;ReadPosRankSum=-0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422863    GT:AD:DP:GQ:PL    0/1:13,10:23:99:207,0,423
6    32610314    rs74223410    T    C    248.13    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.469;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=51.64;MQ0=0;MQRankSum=-4.675;QD=6.36;ReadPosRankSum=0.802;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495840    GT:AD:DP:GQ:PL    0/1:25,14:39:99:278,0,804
6    32610330    rs28383467    A    T    498.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=55;Dels=0.0;FS=6.193;HRun=0;HaplotypeScore=0.9789;MQ=52.32;MQ0=0;MQRankSum=-5.484;QD=9.07;ReadPosRankSum=-0.396;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495840    GT:AD:DP:GQ:PL    0/1:33,22:55:99:529,0,1104
6    32610403    rs80031910    C    A    699.59    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.647;DB;DP=102;Dels=0.0;FS=0.815;HRun=0;HaplotypeScore=0.0;MQ=53.77;MQ0=0;MQRankSum=-4.616;QD=6.86;ReadPosRankSum=-0.083;SNPEFF_AMINO_ACID_CHANGE=A210;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32610387_32610561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:69,33:102:99:730,0,1927
6    32610461    rs9260    A    G    441.25    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.074;DB;DP=77;Dels=0.0;FS=13.043;HRun=0;HaplotypeScore=2.5898;MQ=54.1;MQ0=0;MQRankSum=-4.356;QD=5.73;ReadPosRankSum=0.494;SNPEFF_AMINO_ACID_CHANGE=M230V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32610387_32610561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:52,24:77:99:471,0,1653
6    32610478    rs1048414    C    G    299.62    SnpCluster    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=74;Dels=0.0;FS=27.991;HRun=3;HaplotypeScore=0.9916;MQ=54.12;MQ0=0;MQRankSum=-4.646;QD=4.05;ReadPosRankSum=2.267;SNPEFF_AMINO_ACID_CHANGE=G235;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32610387_32610561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:52,21:74:99:330,0,1676
6    32610481    rs1048419    T    C    295.75    SnpCluster    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.728;DB;DP=73;Dels=0.0;FS=25.145;HRun=1;HaplotypeScore=0.0;MQ=54.03;MQ0=0;MQRankSum=-5.148;QD=4.05;ReadPosRankSum=2.433;SNPEFF_AMINO_ACID_CHANGE=T236;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32610387_32610561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:53,20:73:99:326,0,1729
6    32610487    rs1048430    C    G    304.45    SnpCluster    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=67;Dels=0.0;FS=29.712;HRun=0;HaplotypeScore=0.0;MQ=53.85;MQ0=0;MQRankSum=-4.178;QD=4.54;ReadPosRankSum=1.714;SNPEFF_AMINO_ACID_CHANGE=F238L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32610387_32610561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:48,19:67:99:334,0,1513
6    32610495    rs9272793    A    G    256.48    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=2.013;DB;DP=64;Dels=0.0;FS=29.007;HRun=0;HaplotypeScore=0.0;MQ=53.55;MQ0=0;MQRankSum=-4.629;QD=4.01;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=Q241R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32610387_32610561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:45,19:64:99:286,0,1521
6    32610535    rs1130116    A    C    42.12    QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.33;DB;DP=53;Dels=0.0;FS=11.649;HRun=2;HaplotypeScore=0.0;MQ=54.64;MQ0=0;MQRankSum=-4.876;QD=0.79;ReadPosRankSum=-1.262;SNPEFF_AMINO_ACID_CHANGE=P254;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32610387_32610561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343139    GT:AD:DP:GQ:PL    0/1:43,10:53:72.11:72,0,1449
6    32627795    rs1766    A    G    144.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
6    32627958    rs7656    T    C    982.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    1/1:0,30:31:75.24:1016,75,0
6    32628098    rs28703037    G    C    548.26    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.571;DB;DP=24;Dels=0.0;FS=10.887;HRun=0;HaplotypeScore=0.9999;MQ=57.05;MQ0=0;MQRankSum=2.182;QD=22.84;ReadPosRankSum=1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:3,21:24:48.92:578,0,49
6    32628193    rs9273490    G    A    38.30    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=0.746;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=57.33;MQ0=0;MQRankSum=-2.239;QD=1.47;ReadPosRankSum=1.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:22,4:26:68.29:68,0,658
6    32628224    rs41270871    T    A    454.02    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.937;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9976;MQ=57.95;MQ0=0;MQRankSum=1.654;QD=22.7;ReadPosRankSum=1.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:4,16:20:99:484,0,104
6    32628473    rs9273509    T    C    76.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=47.12;MQ0=0;MQRankSum=-1.38;QD=12.7;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:2,4:6:64.95:106,0,65
6    32628474    rs9273510    G    C    78.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=47.12;MQ0=0;MQRankSum=-1.38;QD=13.01;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:2,4:6:67.19:108,0,67
6    32628505    rs9273511    T    A    52.25    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=0;MQRankSum=-1.754;QD=7.46;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:3,4:7:82.25:82,0,107
6    32628538    rs9273514    G    T    113.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=47.12;MQ0=0;MQRankSum=-3.62;QD=6.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:9,9:18:99:143,0,318
6    32628539    rs9273515    G    A    109.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=47.12;MQ0=0;MQRankSum=-3.62;QD=6.08;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:9,9:18:99:139,0,325
6    32628595    rs9273524    T    C    325.41    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.774;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.9812;MQ=47.12;MQ0=0;MQRankSum=-4.069;QD=10.17;ReadPosRankSum=-2.401;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:14,17:32:99:355,0,453
6    32628602    rs33974892    G    GC    542.56    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=3.778;DB;DP=38;FS=0.0;HRun=2;HaplotypeScore=377.8007;IndelType=I;MQ=48.64;MQ0=0;MQRankSum=-3.847;QD=14.28;ReadPosRankSum=0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:22,15:38:99:582,0,556
6    32628606    .    C    A    452.99    HaplotypeScoreFilter13    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DP=37;Dels=0.0;FS=1.399;HRun=0;HaplotypeScore=16.9323;MQ=49.06;MQ0=0;MQRankSum=4.983;QD=12.24;ReadPosRankSum=0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:19,18:37:99:483,0,441
6    32628621    rs9273527    T    C    430.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.772;DB;DP=40;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-4.152;QD=10.75;ReadPosRankSum=0.744;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:20,20:40:99:460,0,569
6    32628698    rs78532762    C    T    182.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DB;DP=36;Dels=0.0;FS=9.259;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;MQRankSum=-4.65;QD=5.08;ReadPosRankSum=0.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:20,16:36:99:213,0,562
6    32628699    rs9273530    A    G    171.10    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=35;Dels=0.0;FS=9.238;HRun=0;HaplotypeScore=0.8321;MQ=49.17;MQ0=0;MQRankSum=-4.752;QD=4.89;ReadPosRankSum=0.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:19,16:35:99:201,0,580
6    32628996    rs9273560    C    A    36.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=46.14;MQ0=0;MQRankSum=-1.537;QD=6.12;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:3,3:6:66.69:67,0,101
6    32629032    rs73729446    C    G    202.18    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8994;MQ=52.04;MQ0=0;MQRankSum=2.637;QD=15.55;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:4,9:13:5.55:232,0,6
6    32629137    rs1140343    T    G    147.86    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=39;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=2.5252;MQ=54.25;MQ0=0;MQRankSum=-4.498;QD=3.79;ReadPosRankSum=0.79;SNPEFF_AMINO_ACID_CHANGE=Q253H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629124_32629234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    0/1:30,9:39:99:178,0,947
6    32629141    rs34134876    C    T    126.21    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=42;Dels=0.0;FS=1.639;HRun=0;HaplotypeScore=2.5252;MQ=54.68;MQ0=0;MQRankSum=-4.116;QD=3.0;ReadPosRankSum=1.714;SNPEFF_AMINO_ACID_CHANGE=R252H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629124_32629234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    0/1:34,8:42:99:156,0,944
6    32629161    rs1130430    A    G    71.89    QDFilter2    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=55.7;MQ0=0;MQRankSum=-4.171;QD=1.56;ReadPosRankSum=1.187;SNPEFF_AMINO_ACID_CHANGE=L245;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629124_32629234;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    0/1:38,8:46:99:102,0,1138
6    32629341    rs9273721    C    A    310.26    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.099;QD=23.87;ReadPosRankSum=0.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:2,11:13:39.10:340,0,39
6    32629545    rs79603908    T    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    32629650    rs75731761    T    C    64.63    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.45;MQ0=0;MQRankSum=-2.855;QD=4.97;ReadPosRankSum=0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:9,4:13:94.62:95,0,303
6    32629680    rs2854272    A    G    225.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.193;DB;DP=25;Dels=0.0;FS=3.01;HRun=2;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-4.188;QD=9.01;ReadPosRankSum=-1.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:15,10:25:99:255,0,498
6    32629697    .    T    TCTGTC    1084.62    PASS    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=4.985;DP=38;FS=2.695;HRun=0;HaplotypeScore=304.9819;IndelType=I;MQ=50.83;MQ0=0;MQRankSum=-4.831;QD=28.54;ReadPosRankSum=0.862;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:29,9:38:99:1124,0,1413
6    32629708    rs111657760    T    TG    475.17    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=4.912;DB;DP=46;FS=4.136;HRun=3;HaplotypeScore=284.0959;IndelType=I;MQ=51.96;MQ0=0;MQRankSum=-4.636;QD=10.33;ReadPosRankSum=0.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:31,15:46:99:514,0,830
6    32629716    rs9273902    T    C    379.59    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.046;DB;DP=49;Dels=0.0;FS=3.443;HRun=0;HaplotypeScore=0.9973;MQ=52.81;MQ0=0;MQRankSum=-4.06;QD=7.75;ReadPosRankSum=-1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:31,18:49:99:410,0,859
6    32629802    rs75643968;rs76063882    A    G    732.67    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.975;DB;DP=75;Dels=0.0;FS=0.947;HRun=0;HaplotypeScore=1.7987;MQ=53.38;MQ0=0;MQRankSum=-3.048;QD=9.77;ReadPosRankSum=0.407;SNPEFF_AMINO_ACID_CHANGE=D111;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629744_32630025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399082    GT:AD:DP:GQ:PL    0/1:42,33:75:99:763,0,1074
6    32629847    rs1049133    A    G    741.04    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.711;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=51.53;MQ0=0;MQRankSum=-3.468;QD=12.15;ReadPosRankSum=-0.56;SNPEFF_AMINO_ACID_CHANGE=T122;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629779_32630025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:31,30:61:99:771,0,959
6    32629889    rs1049087    G    A    419.57    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=3.131;DB;DP=56;Dels=0.0;FS=7.985;HRun=0;HaplotypeScore=0.6651;MQ=52.07;MQ0=0;MQRankSum=-3.797;QD=7.49;ReadPosRankSum=1.965;SNPEFF_AMINO_ACID_CHANGE=A108;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629779_32630025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:33,23:56:99:450,0,952
6    32629904    rs1049086    A    G    330.76    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=49;Dels=0.0;FS=11.252;HRun=1;HaplotypeScore=0.0;MQ=51.6;MQ0=0;MQRankSum=-4.075;QD=6.75;ReadPosRankSum=0.944;SNPEFF_AMINO_ACID_CHANGE=D103;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629779_32630025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:31,18:49:99:361,0,1086
6    32629905    rs2647032    T    C    341.68    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.03;DB;DP=50;Dels=0.0;FS=8.805;HRun=1;HaplotypeScore=0.0;MQ=51.78;MQ0=0;MQRankSum=-2.375;QD=6.83;ReadPosRankSum=1.041;SNPEFF_AMINO_ACID_CHANGE=D103G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629779_32630025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    0/1:32,18:50:99:372,0,1111
6    32629920    rs77483500    C    T    1189.76    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=4.502;DB;DP=48;Dels=0.0;FS=16.144;HRun=0;HaplotypeScore=0.8667;MQ=53.11;MQ0=0;MQRankSum=4.23;QD=24.79;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=R162Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629744_32630025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    0/1:14,34:48:99:1220,0,253
6    32629935    rs113231645    C    G    216.26    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=47;Dels=0.0;FS=19.91;HRun=2;HaplotypeScore=0.8941;MQ=52.39;MQ0=0;MQRankSum=-2.896;QD=4.6;ReadPosRankSum=-3.547;SNPEFF_AMINO_ACID_CHANGE=G157A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32629744_32630025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    0/1:33,14:47:99:246,0,1206
6    32630139    rs71542432    G    C    406.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:439,33,0
6    32632523    rs9274369    A    G    333.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:367,30,0
6    32632534    rs28746795    T    C    305.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.43;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:339,27,0
6    32632547    rs73729452    G    C    337.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;QD=28.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,11:12:30.09:371,30,0
6    32632587    rs1130397    A    G    553.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.64;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=L123;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:586,48,0
6    32632598    rs17412833    A    T    468.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=23.4;SNPEFF_AMINO_ACID_CHANGE=F119Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,20:20:42.12:501,42,0
6    32632601    rs9274380    G    C    477.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.38;MQ0=0;QD=25.14;SNPEFF_AMINO_ACID_CHANGE=A118G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,19:19:42.12:511,42,0
6    32632650    rs1130386    C    T    816.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=G102R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:850,66,0
6    32632688    rs1071637    T    A    1268.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.98;MQ0=0;QD=32.51;SNPEFF_AMINO_ACID_CHANGE=D25V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632710;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447884    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1301,99,0
6    32632714    rs3210148    G    C    1279    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.83;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=R80;SNPEFF_CODON_CHANGE=cgC/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1312,102,0
6    32632770    rs77080306    A    G    1042.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.31;MQ0=0;QD=29.77;SNPEFF_AMINO_ACID_CHANGE=Y62H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,35:35:81.26:1075,81,0
6    32632777    rs1049068    C    T    987.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=V59;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:1020,78,0
6    32632832    rs77051381    A    T    858.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=29.59;SNPEFF_AMINO_ACID_CHANGE=F41Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32632575_32632844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    1/1:0,29:29:69.22:891,69,0
6    32634243    rs9274514    G    A    34.85    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=0.553;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.29;MQ0=0;MQRankSum=-3.107;QD=1.58;ReadPosRankSum=1.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DQB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374943    GT:AD:DP:GQ:PL    0/1:18,4:22:64.84:65,0,526
6    32709309    rs2051600    A    G    145.08    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.743;DB;DP=16;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.323;QD=9.07;ReadPosRankSum=0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:9,7:16:99:175,0,239
6    32709346    rs2051599    T    C    33.49    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=56.04;MQ0=0;MQRankSum=0.741;QD=2.79;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:7,5:12:63.48:63,0,192
6    32709363    rs115536168    G    A    71.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=11;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=1.933;MQ=55.66;MQ0=0;MQRankSum=-1.159;QD=6.54;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:6,5:11:99:102,0,192
6    32709370    rs114768297    T    C    64.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.422;QD=6.47;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:6,4:10:94.70:95,0,184
6    32713030    rs3208181    T    C    976.41    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.372;DB;DP=69;Dels=0.0;FS=3.244;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=14.15;ReadPosRankSum=1.628;SNPEFF_AMINO_ACID_CHANGE=Y59;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32712936_32713184;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1006,0,1088
6    32713126    .    G    A    856.35    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.124;DP=70;Dels=0.0;FS=3.224;HRun=0;HaplotypeScore=2.898;MQ=59.4;MQ0=0;MQRankSum=-2.003;QD=12.23;ReadPosRankSum=-0.321;SNPEFF_AMINO_ACID_CHANGE=V91;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32712936_32713184;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:39,31:70:99:886,0,1315
6    32713188    rs114870984    C    T    793.62    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8273;MQ=59.39;MQ0=0;MQRankSum=-0.324;QD=11.67;ReadPosRankSum=1.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:39,28:68:99:824,0,1097
6    32713521    rs34355847    T    G    31.35    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.374;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.8;MQ0=0;MQRankSum=-3.295;QD=1.25;ReadPosRankSum=0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:20,5:25:61.34:61,0,705
6    32713827    rs1129956    C    T    256.48    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.407;DB;DP=92;Dels=0.0;FS=59.972;HRun=0;HaplotypeScore=1.6567;MQ=53.68;MQ0=2;MQRankSum=-1.91;QD=2.79;ReadPosRankSum=-1.132;SNPEFF_AMINO_ACID_CHANGE=D197;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32713568_32713849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:72,20:92:99:286,0,1582
6    32713888    rs17213337    T    C    1316.34    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.244;DB;DP=69;Dels=0.0;FS=2.113;HRun=0;HaplotypeScore=2.6166;MQ=55.8;MQ0=0;MQRankSum=0.609;QD=19.08;ReadPosRankSum=-0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:27,42:69:99:1346,0,776
6    32714175    rs2071799    C    T    1030.88    HaplotypeScoreFilter13    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.223;DB;DP=64;Dels=0.0;FS=2.34;HRun=0;HaplotypeScore=30.8949;MQ=59.98;MQ0=0;MQRankSum=0.285;QD=16.11;ReadPosRankSum=-1.359;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:27,37:64:99:1061,0,916
6    32714182    rs36079895    GA    G    904.82    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=6.312;DB;DP=59;FS=2.62;HRun=4;HaplotypeScore=273.5649;IndelType=D;MQ=59.98;MQ0=0;MQRankSum=1.994;QD=15.34;ReadPosRankSum=0.626;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374940    GT:AD:DP:GQ:PL    0/1:28,31:59:99:944,0,861
6    32724143    rs6457646    G    A    194.54    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.732;QD=11.44;ReadPosRankSum=0.439;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:10,7:17:99:225,0,327
6    32724258    rs116387705    C    T    512.92    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.39;MQ0=0;MQRankSum=-0.729;QD=14.25;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:17,19:36:99:543,0,488
6    32724305    rs3213489    T    C    227.97    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=40;Dels=0.0;FS=7.553;HRun=4;HaplotypeScore=0.0;MQ=55.83;MQ0=0;MQRankSum=-1.659;QD=5.7;ReadPosRankSum=-0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:26,14:40:99:258,0,965
6    32724312    rs3213488    C    G    196.56    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.709;DB;DP=42;Dels=0.0;FS=7.267;HRun=0;HaplotypeScore=0.0;MQ=55.45;MQ0=0;MQRankSum=-2.257;QD=4.68;ReadPosRankSum=-1.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:27,15:42:99:227,0,1020
6    32724317    rs3213487    C    T    245.64    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.818;DB;DP=44;Dels=0.0;FS=4.684;HRun=2;HaplotypeScore=0.734;MQ=55.1;MQ0=0;MQRankSum=-2.086;QD=5.58;ReadPosRankSum=-1.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:28,16:44:99:276,0,1028
6    32724324    rs3213486    T    C    368.87    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=4.187;DB;DP=46;Dels=0.0;FS=2.912;HRun=0;HaplotypeScore=0.734;MQ=56.39;MQ0=0;MQRankSum=-0.25;QD=8.02;ReadPosRankSum=-2.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:29,17:46:99:399,0,974
6    32725062    rs3213484    T    A    164.46    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.097;DB;DP=23;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.032;QD=7.15;ReadPosRankSum=0.484;SNPEFF_AMINO_ACID_CHANGE=P222;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32725058_32725081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:15,8:23:99:194,0,429
6    32725193    rs2301271    A    G    37.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.52;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:3,2:5:67.60:68,0,109
6    32725517    rs9276569    T    C    640.13    HaplotypeScoreFilter13    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.319;DB;DP=60;Dels=0.0;FS=2.778;HRun=1;HaplotypeScore=20.9529;MQ=58.63;MQ0=0;MQRankSum=-0.465;QD=10.67;ReadPosRankSum=-1.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:35,25:60:99:670,0,1104
6    32725523    rs112856976    T    TC    687.39    PASS    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=4.454;DB;DP=61;FS=0.0;HRun=4;HaplotypeScore=226.7133;IndelType=I;MQ=59.04;MQ0=0;MQRankSum=0.143;QD=11.27;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:41,20:61:99:726,0,989
6    32725619    rs9276570    T    C    792.97    SnpCluster    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.143;DB;DP=86;Dels=0.0;FS=9.057;HRun=0;HaplotypeScore=0.0;MQ=54.66;MQ0=0;MQRankSum=0.113;QD=9.22;ReadPosRankSum=1.64;SNPEFF_AMINO_ACID_CHANGE=I230V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32725550_32725660;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435145    GT:AD:DP:GQ:PL    0/1:49,37:86:99:823,0,1393
6    32725620    rs114406991    G    A    790.96    SnpCluster    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.992;DB;DP=87;Dels=0.0;FS=10.944;HRun=0;HaplotypeScore=0.0;MQ=54.72;MQ0=0;MQRankSum=-0.245;QD=9.09;ReadPosRankSum=2.013;SNPEFF_AMINO_ACID_CHANGE=G229;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32725550_32725660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435145    GT:AD:DP:GQ:PL    0/1:50,37:87:99:821,0,1415
6    32725625    rs9276572    T    C    1129.02    SnpCluster    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=87;Dels=0.0;FS=9.004;HRun=1;HaplotypeScore=0.0;MQ=54.72;MQ0=0;MQRankSum=-0.081;QD=12.98;ReadPosRankSum=2.058;SNPEFF_AMINO_ACID_CHANGE=S228G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32725550_32725660;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435145    GT:AD:DP:GQ:PL    0/1:49,38:87:99:1159,0,1369
6    32725672    rs71536156    A    AG    1538.39    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=7.555;DB;DP=81;FS=0.997;HRun=1;HaplotypeScore=564.4524;IndelType=I;MQ=57.26;MQ0=0;MQRankSum=-0.392;QD=18.76;ReadPosRankSum=-0.563;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:37,45:81:99:1577,0,1234
6    32725826    rs4305772    A    G    208.93    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.9522;MQ=51.13;MQ0=0;MQRankSum=-1.2;QD=14.92;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:5,9:14:99:239,0,169
6    32726577    rs114790991    G    T    349.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8735;MQ=58.82;MQ0=0;MQRankSum=1.01;QD=14.58;ReadPosRankSum=0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:12,12:24:99:380,0,378
6    32726803    rs1049110    C    T    1074.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.658;DB;DP=97;Dels=0.0;FS=10.589;HRun=0;HaplotypeScore=1.9628;MQ=57.06;MQ0=1;MQRankSum=1.039;QD=11.08;ReadPosRankSum=-0.395;SNPEFF_AMINO_ACID_CHANGE=R157Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32726627_32726908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:60,36:97:99:1105,0,1647
6    32726838    rs115930565    C    T    945.69    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=3.489;DB;DP=107;Dels=0.0;FS=4.059;HRun=0;HaplotypeScore=0.0;MQ=53.23;MQ0=2;MQRankSum=1.553;QD=8.84;ReadPosRankSum=0.123;SNPEFF_AMINO_ACID_CHANGE=S145;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32726627_32726908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:73,34:107:99:976,0,1943
6    32726966    rs34109750    C    T    296.74    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=4.302;DB;DP=52;Dels=0.0;FS=2.168;HRun=0;HaplotypeScore=0.8321;MQ=57.24;MQ0=0;MQRankSum=-0.424;QD=5.71;ReadPosRankSum=-0.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:37,15:52:99:327,0,1061
6    32727002    rs34579624    A    G    43.13    QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.331;DB;DP=28;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=8.8212;MQ=54.03;MQ0=0;MQRankSum=-1.449;QD=1.54;ReadPosRankSum=0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:20,8:28:73.12:73,0,740
6    32727004    rs114362390    A    G    334.86    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=12.7786;MQ=54.74;MQ0=0;MQRankSum=-0.655;QD=12.4;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:13,14:27:99:365,0,467
6    32729412    rs114173247    C    A    36.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.727;QD=7.28;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:1,4:5:32.20:66,0,32
6    32729459    rs2071551    C    T    231.51    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=16.54;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L114;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32729437_32729703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:5,9:14:99:262,0,163
6    32729642    rs762815    G    C    759.95    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.915;DB;DP=58;Dels=0.0;FS=1.054;HRun=2;HaplotypeScore=1.7791;MQ=59.6;MQ0=0;MQRankSum=0.857;QD=13.1;ReadPosRankSum=1.387;SNPEFF_AMINO_ACID_CHANGE=R53;SNPEFF_CODON_CHANGE=cgC/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32729437_32729703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:31,27:58:99:790,0,807
6    32729734    rs2008560    C    G    452.61    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.411;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=58.3;MQ0=0;MQRankSum=-0.015;QD=8.23;ReadPosRankSum=-0.808;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:32,23:55:99:483,0,635
6    32729821    rs7768538    C    A    248.20    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.152;QD=12.41;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:11,9:20:99:278,0,319
6    32729880    rs9276583    G    A    30.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.026;QD=6.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:3,2:5:60.71:61,0,69
6    32731258    rs1573649    G    A    95.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=6.286;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.591;QD=6.37;ReadPosRankSum=-2.062;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_32731151_32731267;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DQB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411527    GT:AD:DP:GQ:PL    0/1:9,6:15:99:126,0,317
6    32782027    rs142378829    GA    G    274.73    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=4.133;DB;DP=25;FS=0.0;HRun=1;HaplotypeScore=94.0875;IndelType=D;MQ=59.07;MQ0=0;MQRankSum=-0.028;QD=10.99;ReadPosRankSum=0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HLA-DOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438763    GT:AD:DP:GQ:PL    0/1:15,10:25:99:314,0,631
6    32782387    rs2071475    G    A    1146.63    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.629;DB;DP=80;Dels=0.0;FS=2.289;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.5;QD=14.33;ReadPosRankSum=2.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HLA-DOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438763    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1177,0,1253
6    32782582    rs2071474    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HLA-DOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438763    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
6    32784620    rs2071472    C    T    633.28    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.134;DB;DP=31;Dels=0.0;FS=3.794;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.909;QD=20.43;ReadPosRankSum=-0.782;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374899    GT:AD:DP:GQ:PL    0/1:10,21:31:99:663,0,253
6    32784753    rs2071470    T    C    338.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.339;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=58.05;MQ0=0;MQRankSum=-1.2;QD=14.11;ReadPosRankSum=-0.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374899    GT:AD:DP:GQ:PL    0/1:12,12:24:99:369,0,344
6    32784783    rs2071469    C    T    296.27    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.88;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-1.796;QD=12.88;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374899    GT:AD:DP:GQ:PL    0/1:13,10:23:99:326,0,313
6    32790167    rs2857104    C    G    37.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.49;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374897    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:67,0,28
6    32796653    rs241449    C    A    37.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.32;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464100    GT:AD:DP:GQ:PL    0/1:4,2:6:67.94:68,0,114
6    32797109    rs241444    G    A    42.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:72,0,24
6    32797115    rs241443    T    G    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:73,0,24
6    32797168    rs241442    G    A    83.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=20.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:114,0,21
6    32797297    rs241441    T    C    238.60    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=23;Dels=0.0;FS=2.154;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=10.37;ReadPosRankSum=0.067;SNPEFF_AMINO_ACID_CHANGE=G604;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32797177_32797313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374897    GT:AD:DP:GQ:PL    0/1:14,9:23:99:269,0,430
6    32797361    rs241440    C    T    197.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.457;DB;DP=21;Dels=0.0;FS=8.022;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=9.41;ReadPosRankSum=1.664;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:14,7:21:99:228,0,371
6    32797488    rs4148874    C    T    527.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:560,42,0
6    32797537    rs241439    T    G    319.12    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.941;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.235;QD=11.0;ReadPosRankSum=-2.587;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:17,12:29:99:349,0,613
6    32797620    rs241438    C    T    861.03    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.994;DB;DP=72;Dels=0.0;FS=6.156;HRun=1;HaplotypeScore=0.0;MQ=59.1;MQ0=0;MQRankSum=0.029;QD=11.96;ReadPosRankSum=-1.443;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:41,31:72:99:891,0,1223
6    32797684    rs241437    A    G    1254.80    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.862;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=0.807;QD=9.88;ReadPosRankSum=0.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:75,52:127:99:1285,0,2570
6    32797876    rs241436    A    G    753.73    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.665;DB;DP=65;Dels=0.0;FS=7.798;HRun=3;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;MQRankSum=0.23;QD=11.6;ReadPosRankSum=-2.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:30,35:65:99:784,0,1073
6    32798647    rs56294406    A    T    112.96    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.198;QD=16.14;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:2,5:7:52.01:143,0,52
6    32798711    rs117821    T    C    149.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
6    32798731    rs1015166    C    T    36.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    0/1:2,2:4:60.89:67,0,61
6    32798795    rs241433    C    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485701    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    32800224    rs2228397    C    A    377.90    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.952;QD=15.12;ReadPosRankSum=1.006;SNPEFF_AMINO_ACID_CHANGE=G386;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32800110_32800238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374897    GT:AD:DP:GQ:PL    0/1:12,13:25:99:408,0,361
6    32802820    rs241430    T    C    308.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374897    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:342,27,0
6    32803316    rs4148871    A    G    421.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374897    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:454,36,0
6    32805307    rs2071466    C    T    835.76    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.186;DB;DP=44;Dels=0.0;FS=3.16;HRun=0;HaplotypeScore=1.8455;MQ=60.0;MQ0=0;MQRankSum=-0.981;QD=18.99;ReadPosRankSum=0.782;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PSMB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374881    GT:AD:DP:GQ:PL    0/1:17,27:44:99:866,0,472
6    32805470    rs2071465    C    G    1022.21    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.282;DB;DP=70;Dels=0.0;FS=2.137;HRun=0;HaplotypeScore=0.8941;MQ=59.34;MQ0=0;MQRankSum=0.57;QD=14.6;ReadPosRankSum=0.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PSMB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374881    GT:AD:DP:GQ:PL    0/1:36,34:70:99:1052,0,988
6    32809076    rs2071464    G    A    43.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354258    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:74,0,22
6    32809223    rs2071627    C    A    575.20    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.139;QD=17.43;ReadPosRankSum=0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354258    GT:AD:DP:GQ:PL    0/1:15,18:33:99:605,0,516
6    32810443    rs9276810    G    A    694.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DB;DP=35;Dels=0.0;FS=1.421;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=19.84;ReadPosRankSum=0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354258    GT:AD:DP:GQ:PL    0/1:14,21:35:99:724,0,333
6    32816054    rs735883    G    A    83.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
6    32824995    .    A    AGC    347.51    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.096;DP=34;FS=17.513;HRun=0;HaplotypeScore=216.4358;IndelType=I;MQ=52.54;MQ0=0;MQRankSum=1.037;QD=9.93;ReadPosRankSum=0.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374859    GT:AD:DP:GQ:PL    0/1:25,9:34:99:387,0,443
6    32825090    rs17587    G    A    432.40    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=56.65;MQ0=0;MQRankSum=-0.11;QD=13.51;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=R37H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32825040_32825171;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395330    GT:AD:DP:GQ:PL    0/1:15,16:32:99:462,0,357
6    32826233    rs20547    A    G    700.68    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.915;DB;DP=53;Dels=0.0;FS=4.061;HRun=0;HaplotypeScore=2.8398;MQ=59.65;MQ0=0;MQRankSum=0.613;QD=13.22;ReadPosRankSum=-0.613;SNPEFF_AMINO_ACID_CHANGE=A117;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32826141_32826282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395333    GT:AD:DP:GQ:PL    0/1:28,25:53:99:731,0,856
6    32826985    rs116111038    C    T    202.55    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=15.58;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414474    GT:AD:DP:GQ:PL    0/1:6,7:13:99:233,0,205
6    32844922    rs9276883    G    A    263.81    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.534;QD=11.99;ReadPosRankSum=0.601;SNPEFF_AMINO_ACID_CHANGE=G165S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32844830_32844922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395333    GT:AD:DP:GQ:PL    0/1:13,9:22:99:294,0,396
6    32844970    rs115750838    G    A    260.89    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.489;DB;DP=18;Dels=0.0;FS=2.304;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=2.355;QD=14.49;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395333    GT:AD:DP:GQ:PL    0/1:8,10:18:99:291,0,246
6    32847309    rs34065341    GC    G    611.03    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.47;DB;DP=45;FS=2.675;HRun=2;HaplotypeScore=114.3332;IndelType=D;MQ=59.07;MQ0=0;MQRankSum=0.548;QD=13.58;ReadPosRankSum=0.986;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395333    GT:AD:DP:GQ:PL    0/1:25,20:45:99:650,0,905
6    32904601    rs114386448    G    T    1958.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XXbac-BPG181M17.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429234    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1992,144,0
6    32904661    rs114966479    G    A    2600.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=34.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XXbac-BPG181M17.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429234    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2634,193,0
6    32904981    rs1042337    G    A    2589.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9454;MQ=59.7;MQ0=0;QD=34.07;SNPEFF_AMINO_ACID_CHANGE=T197I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32904341_32905233;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DMB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416244    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2623,205,0
6    32916540    rs3833947    A    ACTT    422.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=16.9243;IndelType=I;MQ=49.17;MQ0=0;QD=60.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341486    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:464,21,0
6    32917857    rs1050391    A    G    151.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341486    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:184,15,0
6    32918761    rs2301255    G    A    231.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HLA-DMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341486    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:264,21,0
6    32942302    rs516535    G    A    1581.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_AMINO_ACID_CHANGE=K31;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32942239_32942542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374825    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1615,126,0
6    32943151    rs116281758    T    C    588.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=30.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496118    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:621,51,0
6    32943345    rs116688009    C    T    884.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496118    GT:AD:DP:GQ:PL    1/1:0,27:27:69.20:918,69,0
6    32943661    rs5875427    AG    A    191.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=15.2509;IndelType=D;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496118    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
6    32943979    rs2066741    C    CT    1172.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=1;HaplotypeScore=56.6044;IndelType=I;MQ=60.4;MQ0=0;QD=43.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496118    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1215,81,0
6    32944746    rs11908    G    A    642.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496118    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:676,51,0
6    32944987    rs114409350    A    G    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374825    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
6    32945530    rs3097644    G    C    2120.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374825    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2153,154,0
6    32946133    rs114103281    T    C    2005.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.672;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=59.34;MQ0=0;MQRankSum=0.0;QD=28.65;ReadPosRankSum=0.329;SNPEFF_AMINO_ACID_CHANGE=S483;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32945903_32946165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443797    GT:AD:DP:GQ:PL    1/1:3,67:70:87.10:2039,87,0
6    32946328    rs115184063    G    C    233.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464592    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:266,21,0
6    32947516    rs144607208    A    G    62.67    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=8.95;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463639    GT:AD:DP:GQ:PL    0/1:3,4:7:92.67:93,0,107
6    32948607    rs1049414    C    T    318.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463639    GT:AD:DP:GQ:PL    1/1:0,12:12:30.07:351,30,0
6    32974401    rs2581    G    T    122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374813    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
6    32974843    rs6913008    C    T    2029.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=30.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374813    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2062,153,0
6    32975014    rs399604    T    C    2649.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374813    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2682,211,0
6    32975257    rs365066    C    T    2515.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=L118;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_32975088_32975369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450833    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2548,196,0
6    32975381    rs453779    A    G    808.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467465    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:841,66,0
6    32975511    rs2267647    A    G    222.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467465    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:256,21,0
6    32975578    rs9276980    T    C    167.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467465    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
6    32975699    rs9276981    G    C    168.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=21.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467465    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:201,15,0
6    32977535    rs396090    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLA-DOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229829    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    33084671    rs3129294    A    C    37.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.47;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HLA-DPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435074    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,98
6    33131734    rs2257126    A    G    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
6    33131893    rs9405002    C    T    66.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.55;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:4,3:7:96.83:97,0,132
6    33132338    rs2744514    G    A    32.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:64,6,0
6    33134102    rs3116955    T    C    102.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.71;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:3,4:7:98.18:133,0,98
6    33134392    rs2855453    C    A    190.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.074;DB;DP=18;Dels=0.0;FS=4.467;HRun=0;HaplotypeScore=1.7172;MQ=58.71;MQ0=0;MQRankSum=0.927;QD=10.56;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:8,10:18:99:220,0,237
6    33136575    rs2855448    C    T    107.06    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=13.38;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:3,5:8:98.94:137,0,99
6    33136675    rs113461359    A    AC    499.53    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.654;DB;DP=40;FS=10.609;HRun=7;HaplotypeScore=113.8803;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=0.775;QD=12.49;ReadPosRankSum=0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:21,17:40:99:539,0,408
6    33137390    rs191021015    A    G    62.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=9.7;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.79;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:5,3:8:92.30:92,0,184
6    33137403    rs2855442    C    T    76.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.81;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:2,3:6:67.96:107,0,68
6    33137570    rs78244274    C    T    265.33    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9065;MQ=58.05;MQ0=0;MQRankSum=0.415;QD=7.37;ReadPosRankSum=0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:17,19:36:99:295,0,356
6    33137727    rs2855441    C    T    562.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.438;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.146;QD=14.81;ReadPosRankSum=0.321;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:19,19:38:99:593,0,613
6    33138021    rs9368758    G    A    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.59;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,112
6    33138498    rs2855440    T    C    175.27    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=26;Dels=0.0;FS=6.884;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.764;QD=6.74;ReadPosRankSum=-1.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:16,10:26:99:205,0,560
6    33138746    rs9280358    CA    C    239.65    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.94;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=48.8122;IndelType=D;MQ=60.57;MQ0=0;MQRankSum=0.372;QD=12.61;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:11,8:19:99:279,0,471
6    33139662    rs2855434    A    G    141    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.931;DB;DP=19;Dels=0.0;FS=4.242;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.28;QD=7.42;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    0/1:11,8:19:99:171,0,403
6    33141161    rs2229785    A    G    257.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.357;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.028;QD=10.29;ReadPosRankSum=1.747;SNPEFF_AMINO_ACID_CHANGE=D793;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33141125_33141178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361917    GT:AD:DP:GQ:PL    0/1:15,10:25:99:287,0,509
6    33141253    rs9277932    T    G    343.75    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.242;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.996;QD=9.29;ReadPosRankSum=-0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    0/1:21,16:37:99:374,0,640
6    33141389    rs970902    C    T    99.60    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.461;QD=8.3;ReadPosRankSum=-1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    0/1:5,7:12:99:130,0,178
6    33141475    rs970901    C    T    130.70    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=11.88;ReadPosRankSum=1.932;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    0/1:5,6:11:99:161,0,161
6    33141920    rs2744512    G    C    100.14    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=11;Dels=0.0;FS=6.264;HRun=3;HaplotypeScore=2.8995;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=9.1;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    0/1:7,4:11:99:130,0,167
6    33142253    rs2855428    C    G    256.41    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=19;Dels=0.0;FS=4.561;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=13.5;ReadPosRankSum=0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    0/1:9,10:19:99:286,0,215
6    33143756    rs2071025    A    G    1647.86    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DB;DP=101;Dels=0.0;FS=6.997;HRun=1;HaplotypeScore=0.9789;MQ=59.36;MQ0=0;MQRankSum=-0.951;QD=16.32;ReadPosRankSum=1.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    0/1:46,55:101:99:1678,0,1439
6    33143948    rs2254287    C    G    132.68    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.617;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.08;MQ0=0;MQRankSum=-0.037;QD=6.03;ReadPosRankSum=-1.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    0/1:16,6:22:99:163,0,501
6    33144243    rs1799908    T    A    273.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=30;Dels=0.0;FS=1.55;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.858;QD=9.13;ReadPosRankSum=-2.002;SNPEFF_AMINO_ACID_CHANGE=G605;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33144210_33144263;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361917    GT:AD:DP:GQ:PL    0/1:20,10:30:99:304,0,647
6    33144373    rs2855425    G    A    123.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DB;DP=15;Dels=0.0;FS=6.166;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=8.23;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    0/1:10,5:15:99:154,0,359
6    33145710    rs2855423    A    G    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457788    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
6    33147589    rs3129201    T    G    682.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.99;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341947    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:715,54,0
6    33163451    rs6531    G    A    396.48    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=27;Dels=0.0;FS=2.251;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.771;QD=14.68;ReadPosRankSum=0.995;SNPEFF_AMINO_ACID_CHANGE=F194;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33163347_33163479;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544186    GT:AD:DP:GQ:PL    0/1:14,13:27:99:426,0,480
6    33166034    rs2076310    A    G    1040.89    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.03;DB;DP=84;Dels=0.0;FS=0.924;HRun=1;HaplotypeScore=1.83;MQ=59.5;MQ0=0;MQRankSum=1.172;QD=12.39;ReadPosRankSum=-0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374680    GT:AD:DP:GQ:PL    0/1:45,39:84:99:1071,0,1495
6    33172905    rs75111701    T    C    107.45    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=8.95;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374675    GT:AD:DP:GQ:PL    0/1:7,5:12:99:137,0,217
6    33172932    rs110662    G    A    127.82    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=17;Dels=0.0;FS=5.653;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.854;QD=7.52;ReadPosRankSum=0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374675    GT:AD:DP:GQ:PL    0/1:11,6:17:99:158,0,393
6    33173748    rs138017504    CAG    C    167.78    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=2.165;DB;DP=23;FS=3.274;HRun=0;HaplotypeScore=93.5843;IndelType=D;MQ=59.94;MQ0=0;MQRankSum=0.048;QD=7.29;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374675    GT:AD:DP:GQ:PL    0/1:15,7:23:99:207,0,371
6    33173842    rs116493714    G    A    262.67    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=25;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.43;MQ0=0;MQRankSum=-0.575;QD=10.51;ReadPosRankSum=-0.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374675    GT:AD:DP:GQ:PL    0/1:11,14:25:99:293,0,386
6    33173998    rs383711    G    A    570.01    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=16.29;ReadPosRankSum=-0.149;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374675    GT:AD:DP:GQ:PL    0/1:16,19:35:99:600,0,558
6    33219675    rs34635006    A    G    809.80    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=65;Dels=0.0;FS=1.018;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.422;QD=12.46;ReadPosRankSum=-0.38;SNPEFF_AMINO_ACID_CHANGE=I498T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33219637_33219748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436044    GT:AD:DP:GQ:PL    0/1:33,32:65:99:840,0,1090
6    33232025    rs460568    C    T    124.53    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.774;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.069;QD=5.66;ReadPosRankSum=0.553;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463486    GT:AD:DP:GQ:PL    0/1:16,6:22:99:155,0,565
6    33232430    rs114433860    C    T    627.97    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=32;Dels=0.0;FS=1.657;HRun=1;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=-0.805;QD=19.62;ReadPosRankSum=-0.475;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463486    GT:AD:DP:GQ:PL    0/1:11,20:32:99:658,0,360
6    33240506    rs114243863    A    G    1341.46    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=2.243;DB;DP=76;Dels=0.0;FS=1.082;HRun=0;HaplotypeScore=1.9814;MQ=59.51;MQ0=0;MQRankSum=-0.167;QD=17.65;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439602    GT:AD:DP:GQ:PL    0/1:31,45:76:99:1371,0,917
6    33246518    rs3445    G    A    72.92    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.23;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439602    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:103,0,31
6    33248174    rs114723636    G    A    46.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=4.67;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451237    GT:AD:DP:GQ:PL    0/1:6,4:10:76.72:77,0,173
6    33254556    rs9282487    C    CG    5279.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;FS=0.0;HRun=0;HaplotypeScore=256.4521;IndelType=I;MQ=60.01;MQ0=0;QD=45.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437840    GT:AD:DP:GQ:PL    1/1:1,114:115:99:5279,334,0
6    33255103    rs446735    A    C    1675.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421215    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1709,135,0
6    33256096    rs462093    A    T    5933.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4914;MQ=59.74;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421215    GT:AD:DP:GQ:PL    1/1:1,173:175:99:5933,451,0
6    33256397    rs115031499    G    A    236.75    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=12.46;ReadPosRankSum=-1.236;SNPEFF_AMINO_ACID_CHANGE=S118;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33256391_33256471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR46;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374617    GT:AD:DP:GQ:PL    0/1:9,10:19:99:267,0,273
6    33256471    rs116810514    T    C    525.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=32.85;SNPEFF_AMINO_ACID_CHANGE=T29A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33256391_33256471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444176    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:559,45,0
6    33256984    rs463260    C    T    1350.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.93;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_33256879_33257304;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR46;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374617    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1383,108,0
6    33258443    rs456261    G    A    710.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421215    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:744,57,0
6    33260186    rs9280394    CTTT    C    2274.67    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=8.519;DB;DP=101;FS=0.0;HRun=3;HaplotypeScore=553.2928;IndelType=D;MQ=55.49;MQ0=0;MQRankSum=-1.394;QD=22.52;ReadPosRankSum=0.974;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFDN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374606    GT:AD:DP:GQ:PL    0/1:53,48:101:99:2314,0,3444
6    33260215    rs35273540    C    T    1610.48    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.84;MQ0=0;MQRankSum=-1.582;QD=13.42;ReadPosRankSum=-1.727;SNPEFF_AMINO_ACID_CHANGE=G569E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33260207_33260321;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421215    GT:AD:DP:GQ:PL    0/1:57,63:120:99:1640,0,1841
6    33261871    rs2239842    A    G    1163.02    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=0.941;DB;DP=102;Dels=0.0;FS=5.244;HRun=1;HaplotypeScore=1.663;MQ=60.0;MQ0=0;MQRankSum=0.247;QD=11.4;ReadPosRankSum=2.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFDN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374606    GT:AD:DP:GQ:PL    0/1:62,40:102:99:1193,0,1883
6    33269689    rs5875446    C    CTG    520.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=45.9463;IndelType=I;MQ=57.87;MQ0=0;QD=47.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFDN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463584    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:562,30,0
6    33272541    rs1800838    A    T    262.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437741    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:296,24,0
6    33272626    rs1800837    C    T    769.79    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=59.62;MQ0=0;MQRankSum=0.47;QD=12.62;ReadPosRankSum=0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437741    GT:AD:DP:GQ:PL    0/1:33,28:61:99:800,0,1159
6    33272712    rs2071889    C    A    6097.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=196;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6545;MQ=59.76;MQ0=0;QD=31.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437741    GT:AD:DP:GQ:PL    1/1:2,194:196:99:6098,463,0
6    33272855    rs2071888    G    C    2992.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=57.41;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=T173R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33272766_33273164;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAPBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000489157    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3026,235,0
6    33280795    rs67868917    GT    G    172.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=38.133;IndelType=D;MQ=60.0;MQ0=0;QD=17.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418724    GT:AD:DP:GQ:PL    1/1:0,9:10:28.93:215,29,0
6    33281842    rs75399572    G    T    314.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.094;DB;DP=32;Dels=0.0;FS=1.523;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.413;QD=9.81;ReadPosRankSum=0.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266000    GT:AD:DP:GQ:PL    0/1:16,16:32:99:344,0,472
6    33281843    rs2239840    A    T    322.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=32;Dels=0.0;FS=1.523;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=10.06;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266000    GT:AD:DP:GQ:PL    0/1:16,16:32:99:352,0,448
6    33282002    rs3106189    C    T    97.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266000    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:130,12,0
6    33282628    rs1061783    C    T    179.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266000    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:212,18,0
6    33283766    rs3130100    T    C    1659.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7359;MQ=59.56;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=T310A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33282183_33284762;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418724    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1693,129,0
6    33286825    rs11873    G    A    824.46    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.168;DB;DP=47;Dels=0.0;FS=2.704;HRun=0;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;MQRankSum=-1.168;QD=17.54;ReadPosRankSum=0.44;SNPEFF_AMINO_ACID_CHANGE=A629;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33286774_33286996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414083    GT:AD:DP:GQ:PL    0/1:18,29:47:99:854,0,501
6    33287114    .    A    G    1001.59    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.47;DP=92;Dels=0.0;FS=1.089;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-0.477;QD=10.89;ReadPosRankSum=0.799;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446403    GT:AD:DP:GQ:PL    0/1:52,40:92:99:1032,0,1755
6    33288075    rs116616716    C    A    894.85    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.022;DB;DP=63;Dels=0.0;FS=8.994;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.226;QD=14.2;ReadPosRankSum=0.734;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446403    GT:AD:DP:GQ:PL    0/1:30,33:63:99:925,0,950
6    33288271    rs114250845    A    G    856.33    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.396;DB;DP=68;Dels=0.0;FS=0.939;HRun=0;HaplotypeScore=1.7866;MQ=60.0;MQ0=0;MQRankSum=0.261;QD=12.59;ReadPosRankSum=1.367;SNPEFF_AMINO_ACID_CHANGE=Y304;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33288157_33288368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414083    GT:AD:DP:GQ:PL    0/1:39,29:68:99:886,0,1188
6    33290547    rs115463113    T    A    252.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494082    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
6    33290825    rs114478812    A    G    82.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAXX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494082    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:114,9,0
6    33359716    rs465223    G    C    523.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=29.08;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_33359313_33359774;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428849    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:557,42,0
6    33359820    rs172435    A    C    216.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428849    GT:AD:DP:GQ:PL    1/1:0,8:8:24.02:250,24,0
6    33365640    rs211457    T    C    418.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428849    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:452,33,0
6    33373532    rs116314753    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450504    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    33377482    .    C    CTCTG    1701.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.159;DP=59;FS=0.0;HRun=0;HaplotypeScore=416.4193;IndelType=I;MQ=58.93;MQ0=0;MQRankSum=2.062;QD=28.83;ReadPosRankSum=-1.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494554    GT:AD:DP:GQ:PL    1/1:7,38:59:99:1743,137,0
6    33382241    rs442745    T    C    2242.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374496    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2275,175,0
6    33382288    rs114055674    G    A    2835.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=R304K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33382254_33382321;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374512    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2868,220,0
6    33382943    rs3106196    G    T    3024.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=34.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374496    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3058,226,0
6    33399778    rs9394145    C    T    418.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=R31C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33399508_33399805;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SYNGAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428982    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:451,33,0
6    33400289    rs58922452    C    A    69.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.42;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SYNGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293748    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:100,0,30
6    33414626    rs3119027    T    C    122.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SYNGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293748    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:155,15,0
6    33414637    rs3119019    G    T    79.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SYNGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293748    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
6    33422976    rs3119025    T    G    3121.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.21;MQ0=0;QD=30.6;SNPEFF_AMINO_ACID_CHANGE=S33;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33422807_33425325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395064    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3155,262,0
6    33541507    rs511515    A    G    337.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.12;MQ0=1;QD=24.11;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360661    GT:AD:DP:GQ:PL    1/1:0,14:14:33.08:371,33,0
6    33541719    rs513349    A    G    1120.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.07;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360661    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1154,87,0
6    33543374    rs5745591    CAGG    C    316.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=53.4213;IndelType=D;MQ=53.23;MQ0=0;QD=39.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360661    GT:AD:DP:GQ:PL    1/1:0,8:7:21.07:358,21,0
6    33543409    rs210139    A    C    230.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360661    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:263,21,0
6    33561164    rs210163    C    T    159.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374458    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
6    33608379    rs4713647    T    C    657.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6643;MQ=56.62;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:690,54,0
6    33625696    rs2274200    T    C    739.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:772,57,0
6    33627077    rs2296342    G    A    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    33627573    rs2296341    C    T    87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    33630624    rs2296339    C    T    156.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
6    33630816    rs2296338    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
6    33635854    rs4713651    T    C    115.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
6    33636232    rs9380372    T    C    835.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:868,63,0
6    33639760    rs3736893    G    C    1037.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=58.16;MQ0=0;MQRankSum=-1.459;QD=27.3;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:1,37:38:59.57:1070,60,0
6    33641194    rs2296335    C    T    152.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=61.59;MQ0=0;QD=5.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:1,25:26:23.90:185,24,0
6    33641196    rs3215789    T    TG    1062.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=1;HaplotypeScore=172.1176;IndelType=I;MQ=61.93;MQ0=0;QD=39.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:1,26:27:78.25:1104,78,0
6    33641956    rs7769838    T    C    556.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,18:18:48.09:590,48,0
6    33644768    rs2068236    T    C    439.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:473,36,0
6    33644773    rs4713652    T    A    461.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,15:15:39.09:494,39,0
6    33645115    rs2274197    G    T    74.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
6    33646328    rs2274195    T    C    181.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:214,18,0
6    33647594    rs4713653    C    A    371.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:405,30,0
6    33647651    rs4713654    A    G    463.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:496,39,0
6    33648228    rs2229638    C    T    1247.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=A1449;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33648106_33648231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1281,96,0
6    33651129    rs942636    C    T    110.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=13.76;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=P1581;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33650984_33651174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:2,6:8:62.28:140,0,62
6    33652880    rs753890    G    A    31.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.29;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:3,2:5:61.44:61,0,104
6    33653111    rs942637    T    C    403.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:436,33,0
6    33653448    rs749338    C    T    442.14    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.336;DB;DP=30;Dels=0.0;FS=6.551;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.152;QD=14.74;ReadPosRankSum=1.244;SNPEFF_AMINO_ACID_CHANGE=G1837;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33653420_33653604;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:14,16:30:99:472,0,418
6    33654378    rs4640882    A    G    623.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=38.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:656,48,0
6    33654897    rs942642    T    C    435.94    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=35;Dels=0.0;FS=7.219;HRun=0;HaplotypeScore=1.6671;MQ=58.0;MQ0=0;MQRankSum=0.814;QD=12.46;ReadPosRankSum=0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:14,18:35:99:466,0,415
6    33655173    rs2281916    T    C    106.93    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=11;Dels=0.0;FS=2.632;HRun=5;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.825;QD=9.72;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:5,6:11:99:137,0,169
6    33656654    rs11759396    C    G    108.52    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.267;QD=7.75;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:9,5:14:99:139,0,301
6    33656969    rs2296739    G    A    214.92    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.964;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6439;MQ=58.9;MQ0=0;MQRankSum=0.106;QD=12.64;ReadPosRankSum=2.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:9,7:17:99:245,0,241
6    33657246    rs3818521    C    T    176.10    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=13.55;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:6,7:13:99:206,0,140
6    33658066    rs764752    G    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
6    33658109    rs764753    A    T    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.48;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:68,0,67
6    33658534    rs10947430    G    A    80.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.727;QD=16.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:2,3:5:27.97:110,0,28
6    33659472    rs2229642    C    G    354.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.07;QD=12.65;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=L2436V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33659392_33659496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:16,12:28:99:384,0,544
6    33659536    rs2296740    A    G    528.91    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=53;Dels=0.0;FS=1.33;HRun=2;HaplotypeScore=1.9557;MQ=58.32;MQ0=0;MQRankSum=-1.196;QD=9.98;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:34,19:53:99:559,0,1166
6    33659550    rs36034973    C    CG    710.76    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=5.953;DB;DP=60;FS=2.954;HRun=3;HaplotypeScore=310.2175;IndelType=I;MQ=58.13;MQ0=0;MQRankSum=0.777;QD=11.85;ReadPosRankSum=-0.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:38,22:60:99:750,0,1118
6    33659557    rs2296741    C    T    716.48    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.552;DB;DP=67;Dels=0.0;FS=4.713;HRun=1;HaplotypeScore=0.0;MQ=58.68;MQ0=0;MQRankSum=-0.007;QD=10.69;ReadPosRankSum=-0.873;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:41,26:67:99:746,0,1373
6    33659793    rs2296742    G    A    524.15    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.952;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=-0.055;QD=15.88;ReadPosRankSum=1.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:14,19:33:99:554,0,489
6    33660371    rs3818523    G    A    177.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=22.15;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374214    GT:AD:DP:GQ:PL    0/1:2,6:8:52.92:207,0,53
6    33660411    rs653536    T    C    425.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374214    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:459,36,0
6    33660695    rs3818524    G    C    391.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.513;DB;DP=26;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.103;QD=15.05;ReadPosRankSum=0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374214    GT:AD:DP:GQ:PL    0/1:13,13:26:99:421,0,468
6    33660779    rs3818525    A    G    85.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=21.47;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374214    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:118,9,0
6    33661222    rs3818530    C    G    174.02    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=15.82;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374214    GT:AD:DP:GQ:PL    0/1:5,6:11:93.26:204,0,93
6    33662667    rs684119    C    T    183.39    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=23;Dels=0.0;FS=7.168;HRun=0;HaplotypeScore=0.7887;MQ=59.19;MQ0=0;MQRankSum=0.724;QD=7.97;ReadPosRankSum=-0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374214    GT:AD:DP:GQ:PL    0/1:14,9:23:99:213,0,462
6    33667965    rs594223    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
6    33668370    rs942643    A    G    686.84    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.013;QD=16.35;ReadPosRankSum=-0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374316    GT:AD:DP:GQ:PL    0/1:20,22:42:99:717,0,710
6    33690796    rs4713668    C    T    328.09    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.899;DB;DP=38;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.533;QD=8.63;ReadPosRankSum=0.625;SNPEFF_AMINO_ACID_CHANGE=V312I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33689447_33690964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IP6K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293756    GT:AD:DP:GQ:PL    0/1:20,18:38:99:358,0,576
6    33690797    rs4711341    A    G    325.52    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.716;DB;DP=38;Dels=0.0;FS=1.28;HRun=1;HaplotypeScore=0.9578;MQ=59.34;MQ0=0;MQRankSum=-0.655;QD=8.57;ReadPosRankSum=0.503;SNPEFF_AMINO_ACID_CHANGE=S311;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33689447_33690964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IP6K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293756    GT:AD:DP:GQ:PL    0/1:20,18:38:99:356,0,601
6    33703089    rs623813    C    T    491.81    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.568;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.99;MQ0=0;MQRankSum=-1.971;QD=21.38;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=P55;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33703055_33703432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IP6K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293756    GT:AD:DP:GQ:PL    0/1:7,16:23:99:522,0,207
6    33703230    rs545787    G    A    284.45    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.051;DB;DP=20;Dels=0.0;FS=4.964;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.228;QD=14.22;ReadPosRankSum=1.444;SNPEFF_AMINO_ACID_CHANGE=D8;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_33703055_33703432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IP6K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293756    GT:AD:DP:GQ:PL    0/1:11,9:20:99:314,0,301
6    33740325    rs11755593    G    C    32.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-1.026;QD=6.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502643    GT:AD:DP:GQ:PL    0/1:2,3:5:59.97:62,0,60
6    33748937    rs3833665    G    GA    110.08    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;FS=8.451;HRun=8;HaplotypeScore=23.6352;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=13.76;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293760    GT:AD:DP:GQ:PL    0/1:3,5:8:58.34:149,0,58
6    33749117    .    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293760    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    33751945    rs61394483    G    A    98.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=10.95;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293760    GT:AD:DP:GQ:PL    0/1:4,5:9:99:128,0,137
6    33762625    rs11758463    A    G    191.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=16;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.788;QD=11.97;ReadPosRankSum=-0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266003    GT:AD:DP:GQ:PL    0/1:8,8:16:99:222,0,239
6    34003314    rs34906910    A    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374177    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    34003336    rs2451381    T    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374177    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
6    34003685    rs2228623    T    C    583.15    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=38;Dels=0.0;FS=2.908;HRun=0;HaplotypeScore=0.9979;MQ=59.39;MQ0=0;MQRankSum=-0.059;QD=15.35;ReadPosRankSum=-0.411;SNPEFF_AMINO_ACID_CHANGE=T426;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34003445_34004380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545715    GT:AD:DP:GQ:PL    0/1:17,21:38:99:613,0,506
6    34004042    .    C    T    252.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=15.79;ReadPosRankSum=0.597;SNPEFF_AMINO_ACID_CHANGE=T307;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34003445_34004380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545715    GT:AD:DP:GQ:PL    0/1:6,10:16:99:283,0,176
6    34008006    rs2229900    A    G    1163.13    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.989;DB;DP=91;Dels=0.0;FS=1.733;HRun=0;HaplotypeScore=1.9399;MQ=59.49;MQ0=0;MQRankSum=-0.267;QD=12.78;ReadPosRankSum=-1.145;SNPEFF_AMINO_ACID_CHANGE=D177;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34007955_34008091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545715    GT:AD:DP:GQ:PL    0/1:48,43:91:99:1193,0,1431
6    34026938    rs2451359    C    T    590.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=26.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374177    GT:AD:DP:GQ:PL    1/1:0,22:22:45.15:623,45,0
6    34211341    rs35381162    GT    G    870.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=2;HaplotypeScore=84.5152;IndelType=D;MQ=59.07;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335352    GT:AD:DP:GQ:PL    1/1:1,24:25:72.13:912,72,0
6    34214322    rs1150781    C    G    521.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_AMINO_ACID_CHANGE=G130A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34214172_34214645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335352    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:554,45,0
6    34214348    rs34410712    C    T    384.87    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.225;QD=20.26;ReadPosRankSum=0.549;SNPEFF_AMINO_ACID_CHANGE=M121I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34214172_34214645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335352    GT:AD:DP:GQ:PL    0/1:7,12:19:99:415,0,222
6    34214994    rs10665795    G    GTC    1075.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=62.9658;IndelType=I;MQ=59.19;MQ0=0;QD=43.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311487    GT:AD:DP:GQ:PL    1/1:3,21:24:63.22:1118,63,0
6    34263564    rs41269038    G    T    128.41    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-2.181;QD=11.67;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358797    GT:AD:DP:GQ:PL    0/1:6,5:11:99:158,0,210
6    34385187    .    T    G    153.43    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=13.95;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326199    GT:AD:DP:GQ:PL    0/1:5,6:11:99:183,0,171
6    34497158    rs34502423    T    TC    544.31    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.416;DB;DP=37;FS=1.594;HRun=6;HaplotypeScore=105.3134;IndelType=I;MQ=59.67;MQ0=0;MQRankSum=0.866;QD=14.71;ReadPosRankSum=-1.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PACSIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487760    GT:AD:DP:GQ:PL    0/1:19,18:37:99:583,0,439
6    34506318    .    G    A    69.94    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=50.96;MQ0=0;MQRankSum=0.896;QD=6.36;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PACSIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244458    GT:AD:DP:GQ:PL    0/1:7,4:11:99:100,0,232
6    34614779    rs9469836    C    A    99.38    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=14.2;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf106;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374021    GT:AD:DP:GQ:PL    0/1:3,4:7:99:129,0,102
6    34622561    rs145294670    AG    A    362.44    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=3.427;DB;DP=32;FS=0.0;HRun=1;HaplotypeScore=101.6824;IndelType=D;MQ=59.24;MQ0=0;MQRankSum=-0.142;QD=11.33;ReadPosRankSum=-1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf106;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374021    GT:AD:DP:GQ:PL    0/1:19,13:32:99:401,0,750
6    34664207    rs3800456    T    G    98.60    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=53.95;MQ0=0;MQRankSum=1.517;QD=12.32;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf106;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374023    GT:AD:DP:GQ:PL    0/1:3,5:8:92.90:129,0,93
6    34725478    rs7743724    G    A    262.18    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DB;DP=16;Dels=0.0;FS=3.233;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.423;QD=16.39;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244520    GT:AD:DP:GQ:PL    0/1:7,9:16:99:292,0,217
6    34725655    rs34594913    G    GTCA    6855.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DB;DP=122;FS=0.0;HRun=0;HaplotypeScore=831.4873;IndelType=I;MQ=56.46;MQ0=0;MQRankSum=0.657;QD=56.19;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=C13CH;SNPEFF_CODON_CHANGE=tgt/tgTCAt;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_6_34725331_34725731;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374017    GT:AD:DP:GQ:PL    1/1:15,105:122:99:6856,293,0
6    34735652    .    C    CT    85.17    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DP=26;FS=6.99;HRun=17;HaplotypeScore=258.4199;IndelType=I;MQ=32.45;MQ0=0;MQRankSum=1.271;QD=3.28;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244520    GT:AD:DP:GQ:PL    0/1:18,6:26:1.54:123,0,2
6    34735676    rs3831083    C    CCTCAT    2195.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=267.1944;IndelType=I;MQ=37.89;MQ0=0;QD=57.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244520    GT:AD:DP:GQ:PL    1/1:10,24:38:78.27:2238,78,0
6    34735883    rs3736896    T    C    144.01    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=0.163;QD=8.47;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244520    GT:AD:DP:GQ:PL    0/1:11,6:17:99:174,0,335
6    34738203    rs2038841    T    C    562.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244520    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:596,45,0
6    34741094    rs11968972    G    A    35.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.97;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244520    GT:AD:DP:GQ:PL    0/1:4,2:6:65.83:66,0,116
6    34741174    rs11968954    C    T    418.71    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=22;Dels=0.0;FS=2.881;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=19.03;ReadPosRankSum=0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244520    GT:AD:DP:GQ:PL    0/1:8,14:22:99:449,0,258
6    34760162    rs7769961    G    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    34760325    rs7752060    T    C    78.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:111,9,0
6    34787088    rs71567466    C    A    58.11    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.53;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:1,3:4:28.62:88,0,29
6    34789062    rs7764126    G    A    334.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=35;Dels=0.0;FS=1.421;HRun=3;HaplotypeScore=0.9469;MQ=58.67;MQ0=0;MQRankSum=-0.483;QD=9.55;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:20,15:35:99:364,0,623
6    34791027    rs7774697    A    G    4771.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4772,343,0
6    34802301    rs4624858    C    T    305.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:339,27,0
6    34802999    rs2296362    T    C    556.35    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=28;Dels=0.0;FS=5.305;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.025;QD=19.87;ReadPosRankSum=-1.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:8,20:28:99:586,0,264
6    34803367    rs2296361    G    A    109.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.27;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:2,4:6:61.97:140,0,62
6    34803947    rs4259246    C    T    4303    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.83;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=A285;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34803933_34804125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    1/1:0,132:133:99:4303,331,0
6    34804204    rs7761391    C    T    208.92    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.716;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.702;QD=9.5;ReadPosRankSum=-0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:14,8:22:99:239,0,420
6    34824636    rs11755393    A    G    1969.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.124;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.61;MQ0=0;MQRankSum=-1.732;QD=33.37;ReadPosRankSum=-0.928;SNPEFF_AMINO_ACID_CHANGE=Q454R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34824567_34824706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    1/1:1,58:59:99:2002,115,0
6    34825662    rs16894959    T    C    634.30    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.559;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.206;QD=8.81;ReadPosRankSum=-1.088;SNPEFF_AMINO_ACID_CHANGE=L579;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34825501_34825694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:44,28:72:99:664,0,1390
6    34827085    rs9469913    A    T    423.74    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.751;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=0.449;QD=8.15;ReadPosRankSum=-0.273;SNPEFF_AMINO_ACID_CHANGE=Q984H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34825901_34827348;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:35,17:52:99:454,0,1196
6    34831856    rs13205210    T    C    564.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5781;MQ=58.71;MQ0=0;MQRankSum=-1.97;QD=15.68;ReadPosRankSum=0.944;SNPEFF_AMINO_ACID_CHANGE=M1098T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34831779_34831975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:16,20:36:99:594,0,486
6    34831866    rs3734264    G    A    1337.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.2;SNPEFF_AMINO_ACID_CHANGE=T1101;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34831779_34831975;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1371,102,0
6    34839236    rs9296137    T    C    138.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=58.66;MQ0=0;MQRankSum=-0.065;QD=9.9;ReadPosRankSum=-1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000192788    GT:AD:DP:GQ:PL    0/1:8,6:14:99:169,0,275
6    34850660    rs4646933    G    A    413.72    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.842;DB;DP=35;Dels=0.0;FS=3.536;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.215;QD=11.82;ReadPosRankSum=0.842;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361288    GT:AD:DP:GQ:PL    0/1:18,17:35:99:444,0,571
6    34850826    rs15922    G    C    496.81    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.639;DB;DP=40;Dels=0.0;FS=4.677;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.503;QD=12.42;ReadPosRankSum=-1.618;SNPEFF_AMINO_ACID_CHANGE=T68R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34850709_34850857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361288    GT:AD:DP:GQ:PL    0/1:22,18:40:99:527,0,659
6    34855748    rs1051115    G    C    549.58    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.054;DB;DP=47;Dels=0.0;FS=3.405;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=11.69;ReadPosRankSum=-0.923;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452449    GT:AD:DP:GQ:PL    0/1:23,24:47:99:580,0,734
6    34949607    rs2293242    C    T    1303.19    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.393;DB;DP=73;Dels=0.0;FS=2.314;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.744;QD=17.85;ReadPosRankSum=-0.533;SNPEFF_AMINO_ACID_CHANGE=Y192;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_34949467_34949763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:27,46:73:99:1333,0,805
6    34956806    rs2030611    A    G    32.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.13;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:2,2:4:62.53:63,0,72
6    34957228    rs114233968    T    C    304.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.567;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.474;QD=15.2;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:10,10:20:99:334,0,256
6    34962019    rs11755713    G    C    549.65    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=41;Dels=0.0;FS=2.919;HRun=0;HaplotypeScore=0.9332;MQ=59.44;MQ0=0;MQRankSum=-1.354;QD=13.41;ReadPosRankSum=-0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:21,20:41:99:580,0,566
6    34962060    rs3823438    G    A    925.87    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.034;DB;DP=66;Dels=0.0;FS=3.399;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.083;QD=14.03;ReadPosRankSum=-0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:32,34:66:99:956,0,890
6    35027927    rs820085    T    C    177.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=22.16;SNPEFF_AMINO_ACID_CHANGE=L20S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35027924_35028030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    1/1:1,7:8:15.05:210,15,0
6    35046154    rs820100    T    C    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.63;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:69,0,69
6    35046548    rs820101    A    G    97.43    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=13.92;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:3,4:7:99:127,0,104
6    35050506    rs2177382    G    A    232.80    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6624;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=10.58;ReadPosRankSum=-1.669;SNPEFF_AMINO_ACID_CHANGE=P242;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35050468_35050593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    0/1:13,9:22:99:263,0,392
6    35053695    rs140181302    C    T    270.73    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.233;DB;DP=23;Dels=0.0;FS=1.808;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=1.379;QD=11.77;ReadPosRankSum=-1.51;SNPEFF_AMINO_ACID_CHANGE=V1095;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35053543_35053713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:12,11:23:99:301,0,329
6    35054185    rs13216424    G    A    615.70    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.16;DB;DP=37;Dels=0.0;FS=2.013;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.098;QD=16.64;ReadPosRankSum=0.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360359    GT:AD:DP:GQ:PL    0/1:15,22:37:99:646,0,471
6    35056443    rs2005    A    G    1144.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    1/1:0,35:35:93.26:1177,93,0
6    35072680    rs73745097    G    A    586.31    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DB;DP=32;Dels=0.0;FS=7.935;HRun=0;HaplotypeScore=1.988;MQ=60.0;MQ0=0;MQRankSum=1.775;QD=18.32;ReadPosRankSum=1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    0/1:15,17:32:99:616,0,453
6    35084866    rs3729614    T    TC    122.31    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=13;FS=0.0;HRun=5;HaplotypeScore=30.2783;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=-0.689;QD=9.41;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244645    GT:AD:DP:GQ:PL    0/1:8,5:13:99:161,0,190
6    35085104    rs16871728    C    T    1437.49    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=111;Dels=0.0;FS=15.173;HRun=2;HaplotypeScore=1.7873;MQ=59.17;MQ0=0;MQRankSum=-0.337;QD=12.95;ReadPosRankSum=0.531;SNPEFF_AMINO_ACID_CHANGE=S520;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35085023_35085317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    0/1:60,51:111:99:1467,0,1770
6    35086394    rs41270050    C    A    146.77    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.97;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    0/1:1,6:7:24.59:177,0,25
6    35086773    rs16871749    C    T    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
6    35088381    rs2234045    C    G    595.24    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=44;Dels=0.0;FS=2.675;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.222;QD=13.53;ReadPosRankSum=-1.151;SNPEFF_AMINO_ACID_CHANGE=G112A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35088206_35088423;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000486638    GT:AD:DP:GQ:PL    0/1:21,23:44:99:625,0,661
6    35088608    rs35106671    T    C    4435.21    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=4.292;DB;DP=249;DS;Dels=0.0;FS=1.805;HRun=0;HaplotypeScore=4.258;MQ=59.72;MQ0=0;MQRankSum=-1.35;QD=17.74;ReadPosRankSum=2.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    0/1:105,144:249:99:4435,0,3065
6    35088855    rs13203612    C    G    1203.30    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=0.614;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=59.75;MQ0=0;MQRankSum=-0.227;QD=16.26;ReadPosRankSum=1.167;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1233,0,1133
6    35088949    rs13206654    A    G    257.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=14.28;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    0/1:9,9:18:99:287,0,324
6    35088956    rs2494096    A    G    588.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373990    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:621,45,0
6    35090097    rs2234044    T    C    1127.61    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=0.455;DB;DP=69;Dels=0.0;FS=1.081;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-1.364;QD=16.34;ReadPosRankSum=-1.763;SNPEFF_AMINO_ACID_CHANGE=L125;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35089894_35090114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000512012    GT:AD:DP:GQ:PL    0/1:29,40:69:99:1158,0,912
6    35107682    rs3777748    T    A    542.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244645    GT:AD:DP:GQ:PL    1/1:0,19:19:54.13:575,54,0
6    35107774    rs34103100    A    T    785.56    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.398;DB;DP=58;Dels=0.0;FS=3.769;HRun=0;HaplotypeScore=1.9946;MQ=60.0;MQ0=0;MQRankSum=0.327;QD=13.54;ReadPosRankSum=-0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244645    GT:AD:DP:GQ:PL    0/1:27,31:58:99:816,0,903
6    35107781    rs34715060    G    A    906.04    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.282;DB;DP=60;Dels=0.0;FS=5.189;HRun=0;HaplotypeScore=1.894;MQ=60.0;MQ0=0;MQRankSum=0.333;QD=15.1;ReadPosRankSum=0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244645    GT:AD:DP:GQ:PL    0/1:28,32:60:99:936,0,808
6    35108553    rs35693439    T    G    397.95    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=22;Dels=0.0;FS=4.612;HRun=1;HaplotypeScore=1.8533;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=18.09;ReadPosRankSum=1.412;SNPEFF_AMINO_ACID_CHANGE=D32A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35108524_35108804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000512012    GT:AD:DP:GQ:PL    0/1:8,14:22:99:428,0,224
6    35203203    rs13214290    T    G    94.50    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.935;DB;DP=26;Dels=0.0;FS=9.054;HRun=0;HaplotypeScore=0.0;MQ=57.46;MQ0=0;MQRankSum=-0.212;QD=3.63;ReadPosRankSum=-1.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274938    GT:AD:DP:GQ:PL    0/1:18,8:26:99:124,0,547
6    35205541    rs1929849    T    C    791.32    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=1.384;DB;DP=37;Dels=0.0;FS=4.543;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.779;QD=21.39;ReadPosRankSum=-0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274938    GT:AD:DP:GQ:PL    0/1:13,24:37:99:821,0,414
6    35205881    rs734538    G    A    557.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274938    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:590,45,0
6    35209225    rs3800382    T    A    1447.88    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=4.923;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.905;QD=13.92;ReadPosRankSum=-0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274938    GT:AD:DP:GQ:PL    0/1:54,50:104:99:1478,0,1619
6    35211990    rs58925593    T    G    96.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.08;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274938    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,131
6    35216296    rs2071920    C    T    1033.83    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.251;DB;DP=82;Dels=0.0;FS=0.946;HRun=0;HaplotypeScore=0.9947;MQ=59.32;MQ0=0;MQRankSum=0.911;QD=12.61;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274938    GT:AD:DP:GQ:PL    0/1:44,38:82:99:1064,0,1256
6    35258539    rs763157    C    A    1565.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460229    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1599,114,0
6    35259261    rs1894650    C    G    499.08    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.059;DB;DP=37;Dels=0.0;FS=5.639;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=13.49;ReadPosRankSum=-1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460229    GT:AD:DP:GQ:PL    0/1:16,21:37:99:529,0,484
6    35260503    rs1557567    C    T    273.11    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=25;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.174;QD=10.92;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=H342;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35260331_35260564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF76;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440666    GT:AD:DP:GQ:PL    0/1:13,12:25:99:303,0,409
6    35260530    rs1557568    C    T    244.64    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=4.359;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.286;QD=12.88;ReadPosRankSum=1.347;SNPEFF_AMINO_ACID_CHANGE=S351;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35260331_35260564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF76;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440666    GT:AD:DP:GQ:PL    0/1:10,9:19:99:275,0,320
6    35260615    rs4713848    T    C    626.66    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.661;DB;DP=39;Dels=0.0;FS=4.167;HRun=0;HaplotypeScore=1.367;MQ=59.52;MQ0=0;MQRankSum=-0.716;QD=16.07;ReadPosRankSum=-0.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469195    GT:AD:DP:GQ:PL    0/1:18,20:39:99:657,0,512
6    35260858    rs4711413    G    A    258.78    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.5784;MQ=59.01;MQ0=0;MQRankSum=0.857;QD=13.62;ReadPosRankSum=0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469195    GT:AD:DP:GQ:PL    0/1:9,10:19:99:289,0,292
6    35285543    rs6937088    G    C    122.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394658    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
6    35285720    rs2395617    A    C    510.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_AMINO_ACID_CHANGE=N287T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35285668_35285776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316637    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:543,42,0
6    35378778    rs2016520    C    T    152.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=19.01;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448077    GT:AD:DP:GQ:PL    0/1:2,6:8:63.39:182,0,63
6    35391787    rs2076167    C    T    964.20    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=1.441;DB;DP=65;Dels=0.0;FS=7.597;HRun=0;HaplotypeScore=1.9998;MQ=59.29;MQ0=0;MQRankSum=0.834;QD=14.83;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=N124;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35391723_35391925;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448077    GT:AD:DP:GQ:PL    0/1:29,36:65:99:994,0,817
6    35393404    rs2076166    A    G    37.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPARD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337400    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:67,0,29
6    35423489    rs7757405    A    G    499.64    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.504;DB;DP=44;Dels=0.0;FS=10.387;HRun=0;HaplotypeScore=0.9999;MQ=59.48;MQ0=0;MQRankSum=0.452;QD=11.36;ReadPosRankSum=-1.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229769    GT:AD:DP:GQ:PL    0/1:25,19:44:99:530,0,775
6    35423662    rs4713867    A    C    237.34    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.028;QD=9.13;ReadPosRankSum=0.026;SNPEFF_AMINO_ACID_CHANGE=P129;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35423524_35424130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229769    GT:AD:DP:GQ:PL    0/1:16,10:26:99:267,0,569
6    35424268    rs4713868    A    G    168.41    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=7.66;ReadPosRankSum=1.974;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229769    GT:AD:DP:GQ:PL    0/1:15,7:22:99:198,0,514
6    35426175    rs3823434    C    T    2148.60    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.263;DB;DP=117;Dels=0.0;FS=2.57;HRun=1;HaplotypeScore=3.6495;MQ=59.57;MQ0=0;MQRankSum=-0.858;QD=18.36;ReadPosRankSum=-0.749;SNPEFF_AMINO_ACID_CHANGE=L357;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35426074_35426217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229769    GT:AD:DP:GQ:PL    0/1:43,74:117:99:2179,0,1357
6    35437113    rs78498719    C    G    488.18    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.407;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=58.89;MQ0=0;MQRankSum=1.3;QD=11.62;ReadPosRankSum=-0.486;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229769    GT:AD:DP:GQ:PL    0/1:23,19:42:99:518,0,713
6    35443573    rs2076170    T    G    116.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=16;Dels=0.0;FS=9.249;HRun=0;HaplotypeScore=1.3302;MQ=48.92;MQ0=0;MQRankSum=0.637;QD=7.3;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338863    GT:AD:DP:GQ:PL    0/1:8,8:16:99:147,0,165
6    35445211    rs3215481    GC    G    113.99    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=20.8531;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.67;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338863    GT:AD:DP:GQ:PL    0/1:4,5:9:99:153,0,141
6    35448189    rs760782    T    C    69.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.94;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338863    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,107
6    35471684    .    C    T    152.65    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=21.81;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229771    GT:AD:DP:GQ:PL    0/1:1,6:7:18.92:183,0,19
6    35477025    rs2064318    C    G    3843.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=K208N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35476986_35477089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322263    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3843,292,0
6    35477032    rs2064317    A    G    3998.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DB;DP=114;Dels=0.0;FS=3.826;HRun=0;HaplotypeScore=2.6821;MQ=59.84;MQ0=0;MQRankSum=-0.659;QD=35.07;ReadPosRankSum=0.69;SNPEFF_AMINO_ACID_CHANGE=I206T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35476986_35477089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322263    GT:AD:DP:GQ:PL    1/1:1,113:114:99:3999,264,0
6    35477152    rs7752728    C    T    1616.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428978    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1649,135,0
6    35477303    rs9296155    T    C    1095.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.25;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428978    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1129,87,0
6    35478468    rs2273000    A    G    313.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448446    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:347,27,0
6    35478612    rs2273001    G    A    2438.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=58.67;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229771    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2471,187,0
6    35480262    rs1540910    T    C    101.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=25.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229771    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
6    35604645    rs7746850    A    G    79.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337746    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
6    35610308    rs6902124    C    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337746    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
6    35610681    rs2143404    T    C    1135.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337746    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1169,90,0
6    35704612    rs2817039    G    C    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288065    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
6    35704831    rs56354119    C    G    240.10    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DB;DP=42;Dels=0.0;FS=3.133;HRun=0;HaplotypeScore=1.6553;MQ=59.45;MQ0=0;MQRankSum=-0.363;QD=5.72;ReadPosRankSum=0.424;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288065    GT:AD:DP:GQ:PL    0/1:31,11:42:99:270,0,799
6    35705142    rs12193672    A    G    235.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=11.22;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288065    GT:AD:DP:GQ:PL    0/1:12,9:21:99:266,0,371
6    35705606    rs2817040    G    A    105.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.23;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288065    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,133
6    35705892    rs2817041    T    C    2540.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.98;MQ0=0;QD=31.36;SNPEFF_AMINO_ACID_CHANGE=Y111;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35705804_35705949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288065    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2573,202,0
6    35706062    .    GT    G    229.39    PASS    AC=2;AF=1.00;AN=2;DP=19;FS=0.0;HRun=1;HaplotypeScore=330.5685;IndelType=D;MQ=39.59;MQ0=0;QD=12.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288065    GT:AD:DP:GQ:PL    1/1:13,6:19:30.67:271,31,0
6    35715303    rs2252881    G    C    3643.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2592;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288065    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3644,268,0
6    35747108    rs6910332    G    A    624.54    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=3.025;DB;DP=44;Dels=0.0;FS=1.561;HRun=1;HaplotypeScore=3.4123;MQ=58.95;MQ0=0;MQRankSum=0.352;QD=14.19;ReadPosRankSum=2.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf126;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360454    GT:AD:DP:GQ:PL    0/1:23,21:44:99:655,0,577
6    35748931    rs34109614    T    C    927.05    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=67;Dels=0.0;FS=8.603;HRun=1;HaplotypeScore=0.9665;MQ=59.31;MQ0=0;MQRankSum=0.973;QD=13.84;ReadPosRankSum=0.308;SNPEFF_AMINO_ACID_CHANGE=F14S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35748821_35748986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf127;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542261    GT:AD:DP:GQ:PL    0/1:35,32:67:99:957,0,1005
6    35755658    rs12211728    A    G    451.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.998;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.964;QD=13.28;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=Q78;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35755644_35755929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf127;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542261    GT:AD:DP:GQ:PL    0/1:17,17:34:99:481,0,514
6    35763712    rs116422628    A    C    186.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.91;QD=10.39;ReadPosRankSum=-1.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf127;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428710    GT:AD:DP:GQ:PL    0/1:10,8:18:99:217,0,336
6    35803283    rs2859420    C    T    947.91    PASS    AB=0.347;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.893;DB;DP=49;Dels=0.0;FS=5.027;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.321;QD=19.35;ReadPosRankSum=0.897;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHFPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496656    GT:AD:DP:GQ:PL    0/1:17,32:49:99:978,0,463
6    35806465    rs150409572    C    G    1117.20    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.217;DB;DP=101;Dels=0.0;FS=1.799;HRun=0;HaplotypeScore=1.9952;MQ=59.77;MQ0=0;MQRankSum=-0.856;QD=11.06;ReadPosRankSum=-1.865;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHFPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496656    GT:AD:DP:GQ:PL    0/1:53,48:101:99:1147,0,1614
6    35838622    rs139454218    C    T    382.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.35;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=1.273;QD=19.14;ReadPosRankSum=-1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373821    GT:AD:DP:GQ:PL    0/1:8,12:20:99:413,0,264
6    35912269    rs7746080    A    G    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355574    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:72,0,30
6    35919203    rs115150695    T    C    1066.93    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.379;DB;DP=65;Dels=0.0;FS=2.105;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.034;QD=16.41;ReadPosRankSum=-0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355574    GT:AD:DP:GQ:PL    0/1:29,36:65:99:1097,0,907
6    35923246    rs2295852    T    C    1714.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;QD=30.62;SNPEFF_AMINO_ACID_CHANGE=I534V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35922929_35923297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394602    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1748,141,0
6    35927158    rs148595525    A    AT    1084.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.077;DB;DP=41;FS=0.0;HRun=10;HaplotypeScore=128.1085;IndelType=I;MQ=60.11;MQ0=0;MQRankSum=0.234;QD=26.44;ReadPosRankSum=0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486155    GT:AD:DP:GQ:PL    1/1:5,36:41:86.63:1126,87,0
6    35930126    rs34982564    C    T    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355574    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    35945281    rs61171193    A    G    165.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355574    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
6    35945343    rs9470185    C    T    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355574    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    35980121    rs743923    C    T    2941.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_AMINO_ACID_CHANGE=V159M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_35980026_35980149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000480663    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2975,226,0
6    35987222    rs851035    A    G    204.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355574    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
6    36068053    .    A    C    1277.52    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DP=97;Dels=0.0;FS=4.366;HRun=1;HaplotypeScore=2.7273;MQ=59.52;MQ0=0;MQRankSum=-0.101;QD=13.17;ReadPosRankSum=-0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491957    GT:AD:DP:GQ:PL    0/1:43,54:97:99:1308,0,1366
6    36098333    rs12191295    T    C    360.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476951    GT:AD:DP:GQ:PL    1/1:0,10:11:30.10:394,30,0
6    36098410    rs1059227    A    C    451.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=25.09;SNPEFF_AMINO_ACID_CHANGE=T17;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36098098_36098478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000211287    GT:AD:DP:GQ:PL    1/1:0,18:18:39.11:485,39,0
6    36100669    rs763096    G    A    106.22    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=17.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211287    GT:AD:DP:GQ:PL    0/1:1,5:6:19.31:136,0,19
6    36103921    rs2252430    G    A    436.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476951    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:470,36,0
6    36104803    rs2815812    T    C    101.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=11.27;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476951    GT:AD:DP:GQ:PL    0/1:4,5:9:99:131,0,134
6    36108329    rs2859137    C    G    1833.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211287    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1866,138,0
6    36193259    rs41270094    A    G    97.70    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=19.54;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339717    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:128,0,27
6    36193303    rs59200830    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339717    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    36198396    rs3833482    TG    T    390.33    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=2.76;DB;DP=22;FS=3.096;HRun=3;HaplotypeScore=134.9141;IndelType=D;MQ=58.95;MQ0=0;MQRankSum=-0.986;QD=17.74;ReadPosRankSum=-0.591;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339717    GT:AD:DP:GQ:PL    0/1:9,13:22:99:429,0,162
6    36198421    rs9470234    T    C    311.79    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.03;QD=18.34;ReadPosRankSum=0.38;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339717    GT:AD:DP:GQ:PL    0/1:7,10:17:99:342,0,161
6    36260858    rs2239795    C    T    646.67    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.447;DB;DP=59;Dels=0.0;FS=3.93;HRun=2;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=1.586;QD=10.96;ReadPosRankSum=-0.22;SNPEFF_AMINO_ACID_CHANGE=F153;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36260838_36260903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394571    GT:AD:DP:GQ:PL    0/1:35,24:59:99:677,0,948
6    36261008    rs77964096    A    G    265.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.3391;MQ=60.0;MQ0=0;MQRankSum=0.74;QD=22.11;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312917    GT:AD:DP:GQ:PL    0/1:3,9:12:81.79:295,0,82
6    36261885    rs4713949    A    G    229.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312917    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:262,21,0
6    36275458    rs4713956    T    C    1144.41    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=82;Dels=0.0;FS=1.835;HRun=1;HaplotypeScore=0.9947;MQ=59.54;MQ0=0;MQRankSum=0.869;QD=13.96;ReadPosRankSum=1.139;SNPEFF_AMINO_ACID_CHANGE=S427P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36275364_36276372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388715    GT:AD:DP:GQ:PL    0/1:38,44:82:99:1174,0,1109
6    36287312    rs743852    G    C    1856.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=L582V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36287133_36287387;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf222;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437635    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1890,156,0
6    36290030    rs12190546    C    G    1957.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437635    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1991,150,0
6    36294915    rs6923009    T    A    1515.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437635    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1549,111,0
6    36296514    rs41270100    C    T    916.27    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=80;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.8667;MQ=59.71;MQ0=0;MQRankSum=-0.349;QD=11.45;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437635    GT:AD:DP:GQ:PL    0/1:49,31:80:99:946,0,1465
6    36297641    rs78323290    G    A    125.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.103;QD=12.53;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437635    GT:AD:DP:GQ:PL    0/1:5,5:10:99:155,0,158
6    36298403    rs146454415    G    A    479.79    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=1.052;DB;DP=47;Dels=0.0;FS=2.626;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.1;QD=10.21;ReadPosRankSum=-0.1;SNPEFF_AMINO_ACID_CHANGE=P22L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36297858_36298471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf222;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437635    GT:AD:DP:GQ:PL    0/1:30,17:47:99:510,0,857
6    36343500    rs2067017    A    T    39.47    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.778;QD=2.82;ReadPosRankSum=-1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339796    GT:AD:DP:GQ:PL    0/1:10,4:14:69.46:69,0,329
6    36355372    rs2234071    T    C    168.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.6;QD=14.02;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454782    GT:AD:DP:GQ:PL    0/1:4,8:12:99:198,0,138
6    36359697    rs57324375    TA    T    402.89    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=33;FS=0.0;HRun=4;HaplotypeScore=179.1268;IndelType=D;MQ=58.64;MQ0=0;MQRankSum=0.586;QD=12.21;ReadPosRankSum=-1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454782    GT:AD:DP:GQ:PL    0/1:17,16:33:99:442,0,346
6    36368512    rs7755006    G    A    222.69    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;Dels=0.0;FS=3.802;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=18.56;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454782    GT:AD:DP:GQ:PL    0/1:5,7:12:99:253,0,173
6    36368546    rs1830577    A    G    167.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454782    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:200,15,0
6    36452603    rs71789107    TA    T    157.90    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.743;DB;DP=112;FS=4.78;HRun=16;HaplotypeScore=561.7001;IndelType=D;MQ=56.32;MQ0=0;MQRankSum=0.382;QD=1.41;ReadPosRankSum=1.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373731    GT:AD:DP:GQ:PL    0/1:81,23:112:99:197,0,776
6    36465380    rs626516    C    T    142.41    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229812    GT:AD:DP:GQ:PL    0/1:1,5:6:23.71:172,0,24
6    36483295    rs70975162    CCA    C    229.27    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=42;FS=5.076;HRun=0;HaplotypeScore=155.1649;IndelType=D;MQ=58.57;MQ0=0;MQRankSum=0.951;QD=5.46;ReadPosRankSum=1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229812    GT:AD:DP:GQ:PL    0/1:32,9:42:99:268,0,416
6    36489585    .    C    A    278.80    FSFilter60;HaplotypeScoreFilter13    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.58;DP=112;Dels=0.0;FS=114.22;HRun=2;HaplotypeScore=20.6438;MQ=56.18;MQ0=0;MQRankSum=-1.178;QD=2.49;ReadPosRankSum=0.557;SNPEFF_AMINO_ACID_CHANGE=V106F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36489511_36489594;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229812    GT:AD:DP:GQ:PL    0/1:57,54:112:99:309,0,1350
6    36566513    rs9368942    G    C    288.21    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=2.435;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.27;QD=18.01;ReadPosRankSum=1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536757    GT:AD:DP:GQ:PL    0/1:7,9:16:99:318,0,234
6    36566575    rs9368943    C    T    558.38    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.311;DB;DP=32;Dels=0.0;FS=3.637;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.121;QD=17.45;ReadPosRankSum=0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536757    GT:AD:DP:GQ:PL    0/1:14,18:32:99:588,0,364
6    36641546    rs12199346    C    A    994.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536757    GT:AD:DP:GQ:PL    1/1:0,27:27:78.23:1028,78,0
6    36641754    rs1977172    A    C    2105.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536757    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2138,166,0
6    36651971    rs1801270    C    A    312.50    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=17;Dels=0.0;FS=9.961;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.531;QD=18.38;ReadPosRankSum=-1.164;SNPEFF_AMINO_ACID_CHANGE=S31R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36651874_36652323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDKN1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244741    GT:AD:DP:GQ:PL    0/1:6,11:17:99:342,0,151
6    36652339    rs3176352    C    G    203.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDKN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459970    GT:AD:DP:GQ:PL    1/1:0,10:10:18.05:236,18,0
6    36653597    rs1059234    C    T    1542.90    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.045;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6517;MQ=59.81;MQ0=0;MQRankSum=0.827;QD=12.75;ReadPosRankSum=0.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDKN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459970    GT:AD:DP:GQ:PL    0/1:64,57:121:99:1573,0,1968
6    36683137    rs76705344    G    A    76.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.74;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536757    GT:AD:DP:GQ:PL    0/1:3,3:6:98.51:106,0,99
6    36696330    rs236470    G    A    54.60    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=10.92;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536757    GT:AD:DP:GQ:PL    0/1:1,4:5:27.29:85,0,27
6    36712962    rs743870    C    T    171.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=17.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493411    GT:AD:DP:GQ:PL    0/1:4,6:10:99:202,0,112
6    36713263    rs763046    A    G    118.75    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=16.96;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=C118;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36713165_36713292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393189    GT:AD:DP:GQ:PL    0/1:2,5:7:63.18:149,0,63
6    36715833    rs1010790    A    T    424.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.345;QD=15.16;ReadPosRankSum=-0.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    0/1:14,14:28:99:455,0,472
6    36715921    rs3213537    C    T    1169.38    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.99;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4875;MQ=59.78;MQ0=0;MQRankSum=-0.317;QD=11.03;ReadPosRankSum=0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    0/1:61,44:106:99:1199,0,1779
6    36723572    rs236445    G    C    91.97    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=6.57;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    0/1:10,4:14:99:122,0,362
6    36723704    rs236444    A    G    497.19    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.936;DB;DP=41;Dels=0.0;FS=4.773;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.068;QD=12.13;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    0/1:21,20:41:99:527,0,614
6    36723916    rs12203137    G    A    302.55    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.454;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=15.92;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    0/1:8,11:19:99:333,0,258
6    36733070    rs3752482    A    G    76.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=5.5;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    0/1:8,6:14:99:107,0,132
6    36733132    rs763048    G    A    230.61    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.764;DB;DP=25;Dels=0.0;FS=3.741;HRun=0;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=-1.161;QD=9.22;ReadPosRankSum=0.651;SNPEFF_AMINO_ACID_CHANGE=Y253;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36733112_36733153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    0/1:16,9:25:99:261,0,435
6    36759741    rs9366916    G    A    712.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:746,60,0
6    36759768    rs9349011    C    A    438.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.636;QD=14.62;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    0/1:10,20:30:99:469,0,286
6    36790630    rs9394384    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    36790666    rs9366917    G    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244751    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
6    36922385    rs1405070    G    A    98.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=12.26;ReadPosRankSum=-0.421;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539035    GT:AD:DP:GQ:PL    0/1:4,4:8:81.05:128,0,81
6    36922684    rs1405069    A    C    531.63    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.786;DB;DP=36;Dels=0.0;FS=1.524;HRun=1;HaplotypeScore=1.748;MQ=58.71;MQ0=0;MQRankSum=1.098;QD=14.77;ReadPosRankSum=0.08;SNPEFF_AMINO_ACID_CHANGE=T50P;SNPEFF_CODON_CHANGE=Acg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36922209_36922707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373674    GT:AD:DP:GQ:PL    0/1:16,20:36:99:562,0,462
6    36926952    rs113848006    A    G    46.08    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=-0.322;QD=5.76;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=K68R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36926921_36927142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373674    GT:AD:DP:GQ:PL    0/1:3,5:8:76.07:76,0,110
6    36929484    rs76572819    G    A    61.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.072;QD=6.16;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373674    GT:AD:DP:GQ:PL    0/1:6,4:10:91.55:92,0,214
6    36929561    rs73422765    A    G    99.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.98;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373674    GT:AD:DP:GQ:PL    0/1:6,4:10:99:130,0,214
6    36930657    .    G    C    110.43    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.04;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373674    GT:AD:DP:GQ:PL    0/1:7,4:11:99:140,0,172
6    36931162    rs2296934    A    G    833.15    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=63;Dels=0.0;FS=2.85;HRun=0;HaplotypeScore=1.8893;MQ=59.63;MQ0=0;MQRankSum=-0.282;QD=13.22;ReadPosRankSum=-1.834;SNPEFF_AMINO_ACID_CHANGE=E200;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36930711_36931388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539035    GT:AD:DP:GQ:PL    0/1:34,29:63:99:863,0,1047
6    36936606    rs697750    T    C    1449.81    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=90;Dels=0.0;FS=10.674;HRun=0;HaplotypeScore=0.9967;MQ=59.54;MQ0=0;MQRankSum=1.016;QD=15.93;ReadPosRankSum=0.134;SNPEFF_AMINO_ACID_CHANGE=A327;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_36936513_36936727;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373550    GT:AD:DP:GQ:PL    0/1:39,51:90:99:1480,0,1198
6    36944495    rs708007    A    G    67.37    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=8.42;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337855    GT:AD:DP:GQ:PL    0/1:5,3:8:97.36:97,0,168
6    36990184    rs62406537    T    C    408.95    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.975;DB;DP=27;Dels=0.0;FS=1.685;HRun=1;HaplotypeScore=3.5025;MQ=59.14;MQ0=0;MQRankSum=0.237;QD=15.15;ReadPosRankSum=2.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FGD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470273    GT:AD:DP:GQ:PL    0/1:10,16:27:99:439,0,303
6    37059162    rs73730526    G    A    249.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.065;DB;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-2.888;QD=13.86;ReadPosRankSum=0.133;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP3-405J24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406939    GT:AD:DP:GQ:PL    0/1:8,10:18:99:279,0,239
6    37139322    rs262938    T    C    34.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.683;QD=3.49;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373509    GT:AD:DP:GQ:PL    0/1:6,4:10:64.93:65,0,185
6    37180523    rs1150790    A    G    182.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482580    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:215,18,0
6    37226001    rs4143230    C    G    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    37237544    rs12528367    T    C    217.56    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.0;QD=16.74;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    0/1:5,8:13:99:248,0,171
6    37250112    rs195753    A    G    1812.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_AMINO_ACID_CHANGE=Q191;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_37249961_37250140;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1845,135,0
6    37252210    rs3818136    C    T    2106.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=N257;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_37252112_37252240;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2140,159,0
6    37254990    rs2622892    T    C    274.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:307,24,0
6    37280844    rs149708    A    G    629.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:662,51,0
6    37281326    rs149707    A    G    62.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=20.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:94,9,0
6    37281335    rs149706    T    G    79.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
6    37281834    rs149705    T    C    149.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373491    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:182,15,0
6    37342284    .    G    A    76.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.69;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479516    GT:AD:DP:GQ:PL    0/1:3,3:6:85.79:106,0,86
6    37348920    rs2284923    C    T    2831.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9703;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373479    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2865,208,0
6    37349033    rs2284922    G    A    2109.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=T448;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_37348926_37349130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373479    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2143,162,0
6    37443950    rs9462313    G    A    754.10    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.835;DB;DP=63;Dels=0.0;FS=17.625;HRun=0;HaplotypeScore=0.9734;MQ=59.27;MQ0=0;MQRankSum=-1.06;QD=11.97;ReadPosRankSum=-1.306;SNPEFF_AMINO_ACID_CHANGE=R102;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_37443902_37443970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTSJD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373420    GT:AD:DP:GQ:PL    0/1:31,32:63:99:784,0,798
6    37447075    rs2797790    G    A    562.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=30;Dels=0.0;FS=8.371;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.697;QD=18.75;ReadPosRankSum=0.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC167;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373405    GT:AD:DP:GQ:PL    0/1:12,18:30:99:593,0,319
6    37450914    rs10692    T    C    787.35    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=37;Dels=0.0;FS=6.067;HRun=1;HaplotypeScore=0.5784;MQ=58.87;MQ0=0;MQRankSum=0.6;QD=21.28;ReadPosRankSum=0.568;SNPEFF_AMINO_ACID_CHANGE=I97V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_37450699_37451065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC167;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373405    GT:AD:DP:GQ:PL    0/1:12,25:37:99:817,0,348
6    37475508    rs62408372    A    G    82.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353597.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373404    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
6    37501967    rs2797786    A    G    891.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=27.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353597.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373404    GT:AD:DP:GQ:PL    1/1:0,33:33:81.21:924,81,0
6    37611381    rs9462341    A    T    45.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510077    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:76,0,33
6    37611796    rs45511994    G    A    280.20    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=20.01;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510077    GT:AD:DP:GQ:PL    0/1:5,9:14:99:310,0,164
6    37613592    rs804858    G    A    123.62    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.66;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478143    GT:AD:DP:GQ:PL    0/1:2,5:7:56.42:154,0,56
6    37615199    rs7739832    A    G    71.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.27;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478143    GT:AD:DP:GQ:PL    0/1:3,4:7:99:102,0,103
6    37619830    rs62398393    G    A    191.22    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.019;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=7.35;ReadPosRankSum=0.379;SNPEFF_AMINO_ACID_CHANGE=P423;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_37619787_37620116;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297153    GT:AD:DP:GQ:PL    0/1:18,8:26:99:221,0,486
6    37620129    rs2273109    G    A    402.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508399    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:436,33,0
6    37623566    rs3846874    C    T    474.70    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.748;DB;DP=42;Dels=0.0;FS=1.247;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.047;QD=11.3;ReadPosRankSum=0.122;SNPEFF_AMINO_ACID_CHANGE=P107;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_37623499_37623672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000515437    GT:AD:DP:GQ:PL    0/1:23,19:42:99:505,0,609
6    37631768    rs10947690    A    G    497.24    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.211;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.035;QD=17.76;ReadPosRankSum=-0.188;SNPEFF_AMINO_ACID_CHANGE=L5P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_37631743_37632092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508399    GT:AD:DP:GQ:PL    0/1:11,17:28:99:527,0,379
6    38119895    rs881681    G    C    114.97    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.143;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.15;MQ0=0;MQRankSum=1.585;QD=5.23;ReadPosRankSum=2.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287218    GT:AD:DP:GQ:PL    0/1:16,6:22:99:145,0,545
6    38650628    rs4746    T    G    358.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=14.92;ReadPosRankSum=-1.083;SNPEFF_AMINO_ACID_CHANGE=E111A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38650584_38650651;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373365    GT:AD:DP:GQ:PL    0/1:10,14:24:99:388,0,311
6    38652456    rs2471999    G    T    148.19    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=18.52;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373365    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,104
6    38670837    rs1049346    G    A    33.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=4.79;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_38670747_38670917;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373365    GT:AD:DP:GQ:PL    0/1:4,3:7:63.53:64,0,113
6    38691328    rs77558631    GCAA    G    3506.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.845;DB;DP=105;FS=0.0;HRun=0;HaplotypeScore=522.2552;IndelType=D;MQ=57.52;MQ0=0;MQRankSum=0.972;QD=33.4;ReadPosRankSum=0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:23,82:105:99:3507,184,0
6    38691391    rs9357279    C    A    1476.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.63;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1510,114,0
6    38746090    rs1033526    A    G    153.19    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.777;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=11.78;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:6,7:13:99:183,0,218
6    38746098    rs1033525    C    T    175.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=12.57;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:7,7:14:99:206,0,240
6    38750888    rs3823430    A    G    146.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.112;DB;DP=21;Dels=0.0;FS=4.01;HRun=2;HaplotypeScore=0.9665;MQ=58.89;MQ0=0;MQRankSum=0.41;QD=7.0;ReadPosRankSum=-1.679;SNPEFF_AMINO_ACID_CHANGE=I573V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38750780_38750915;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359357    GT:AD:DP:GQ:PL    0/1:14,7:21:99:177,0,522
6    38754502    rs1678666    A    G    135.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.191;QD=11.26;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:6,6:12:99:165,0,202
6    38754787    rs34300949    GTA    G    184.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=47.2592;IndelType=D;MQ=58.77;MQ0=0;QD=18.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:2,5:10:23.57:227,24,0
6    38773146    rs12665115    T    C    436.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.019;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.584;QD=13.64;ReadPosRankSum=-0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:16,16:32:99:467,0,569
6    38773172    rs1678682    A    G    1458.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1491,111,0
6    38773293    rs874808    G    A    3985.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=G1012E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38773257_38773372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3986,307,0
6    38775336    rs1738229    T    G    132.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=9.46;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:8,6:14:99:162,0,291
6    38781866    rs1678690    C    G    3707.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=S1086;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38781830_38781905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3708,280,0
6    38781931    rs1738221    A    T    2104.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8874;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2138,178,0
6    38782034    rs1678691    T    C    675.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:708,60,0
6    38791555    rs1738210    C    T    114.37    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.572;QD=12.71;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:2,7:9:53.18:144,0,53
6    38799955    rs982705    A    G    168.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
6    38800164    rs9357283    G    A    457.84    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.068;DB;DP=25;Dels=0.0;FS=8.06;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.311;QD=18.31;ReadPosRankSum=-0.437;SNPEFF_AMINO_ACID_CHANGE=E1202K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38800098_38800211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359357    GT:AD:DP:GQ:PL    0/1:8,17:25:99:488,0,236
6    38800209    rs1678729    T    C    102.65    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=12;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=8.55;ReadPosRankSum=-0.678;SNPEFF_AMINO_ACID_CHANGE=L1217;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38800098_38800211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359357    GT:AD:DP:GQ:PL    0/1:7,5:12:99:133,0,260
6    38810043    rs6921238    G    A    392.70    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=4.07;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.615;QD=16.36;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:10,14:24:99:423,0,284
6    38810313    rs1678737    G    A    500.02    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=37;Dels=0.0;FS=3.106;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;MQRankSum=-0.966;QD=13.51;ReadPosRankSum=-0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:21,16:37:99:530,0,704
6    38813642    rs11437275    T    TA    206.88    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.13;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=32.3338;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=14.78;ReadPosRankSum=0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:8,6:14:99:246,0,294
6    38813695    rs1678740    G    A    33.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.62;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:4,2:6:63.71:64,0,140
6    38817884    rs11465003    G    GA    165.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=8;HaplotypeScore=15.8535;IndelType=I;MQ=60.0;MQ0=0;QD=27.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:208,18,0
6    38820451    rs9369085    G    A    852.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:886,66,0
6    38820599    rs9380787    T    G    414.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:447,36,0
6    38825329    rs2061907    C    T    1359.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=H1706;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38825294_38825518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359357    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1392,102,0
6    38825567    rs143384789    C    G    139.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.14;QD=7.78;ReadPosRankSum=-1.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:12,6:18:99:170,0,438
6    38828424    rs34840510    G    GT    1014.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=6;HaplotypeScore=147.0338;IndelType=I;MQ=61.72;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:3,28:31:84.27:1057,84,0
6    38828453    rs6458073    A    T    850.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.4;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:883,66,0
6    38830410    rs9380791    A    G    196.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
6    38831942    rs862422    A    G    336.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=33.67;ReadPosRankSum=1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:370,27,0
6    38840153    rs7757460    A    G    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
6    38840601    rs2235719    G    A    1274.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,39:39:96.29:1307,96,0
6    38841101    rs9380795    G    A    2014.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-1.314;QD=34.74;ReadPosRankSum=1.314;SNPEFF_AMINO_ACID_CHANGE=K2270;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38841012_38841152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441566    GT:AD:DP:GQ:PL    1/1:1,57:58:99:2048,154,0
6    38843283    rs35696175    C    T    106.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=21.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,5:5:15:139,15,0
6    38843426    rs6458080    C    T    1743.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=V2307;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38843367_38843604;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441566    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1776,132,0
6    38850470    rs862431    G    A    164.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
6    38851308    rs4714191    A    G    920.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,25:25:75.17:954,75,0
6    38851669    rs4714192    C    T    1971.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=Y2465;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_38851652_38851774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441566    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2004,144,0
6    38873960    rs7750330    G    A    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
6    38875526    rs9369091    G    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
6    38877605    rs4714198    C    A    106.98    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,178
6    38882937    rs5875644    AG    A    502.14    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=4.504;DB;DP=51;FS=4.458;HRun=2;HaplotypeScore=126.2346;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=0.266;QD=9.85;ReadPosRankSum=-1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:33,18:51:99:541,0,1323
6    38885010    rs11291395    TA    T    468.81    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=4.171;DB;DP=36;FS=6.982;HRun=3;HaplotypeScore=92.5731;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=1.187;QD=13.02;ReadPosRankSum=-2.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:21,15:36:99:508,0,899
6    38899485    rs9296268    G    C    1593.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1627,117,0
6    38903095    rs9296270    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    38906072    rs2073037    A    G    899.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,25:26:69.23:933,69,0
6    38913177    rs522327    A    G    1590.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1623,132,0
6    38942440    rs77086693    C    T    57.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=9.66;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449981    GT:AD:DP:GQ:PL    0/1:2,4:6:64.61:88,0,65
6    38950067    rs148493440    C    A    635.74    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=48;Dels=0.0;FS=3.511;HRun=2;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=1.417;QD=13.24;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:26,22:48:99:666,0,853
6    38976469    rs34058863    C    CT    124.52    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=29;FS=0.0;HRun=14;HaplotypeScore=290.4419;IndelType=I;MQ=45.58;MQ0=0;MQRankSum=-1.324;QD=4.29;ReadPosRankSum=-0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:17,7:29:64.85:164,0,65
6    38976575    rs12210777    C    T    1449.97    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.827;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.607;MQ=58.47;MQ0=0;MQRankSum=1.739;QD=11.89;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:68,54:122:99:1480,0,2032
6    38979946    rs9296273    T    A    348.21    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.463;DB;DP=24;Dels=0.0;FS=2.048;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=14.51;ReadPosRankSum=1.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:11,13:24:99:378,0,308
6    38980459    rs142312664    T    C    739.82    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.744;DB;DP=58;Dels=0.0;FS=2.076;HRun=0;HaplotypeScore=1.6988;MQ=59.28;MQ0=0;MQRankSum=-1.665;QD=12.76;ReadPosRankSum=-0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:32,26:58:99:770,0,1068
6    38994568    rs2273093    A    G    149.95    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327475    GT:AD:DP:GQ:PL    0/1:1,5:6:23.71:180,0,24
6    38998186    rs11966699    C    G    290.39    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=18;Dels=0.0;FS=2.527;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.578;QD=16.13;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441566    GT:AD:DP:GQ:PL    0/1:8,10:18:99:320,0,243
6    39033602    rs6918287    A    G    165.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=E133;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39033487_39033605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
6    39034210    rs4711572    A    G    76.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.15;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    0/1:1,3:4:16.61:107,0,17
6    39034248    rs9296277    G    A    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
6    39040654    rs2235868    A    C    685.43    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.836;DB;DP=59;Dels=0.0;FS=11.554;HRun=2;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.652;QD=11.62;ReadPosRankSum=0.069;SNPEFF_AMINO_ACID_CHANGE=R176;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39040638_39040791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    0/1:34,25:59:99:715,0,1084
6    39040984    rs2235867    A    G    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    39041502    rs1042044    A    C    1029.93    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.656;DB;DP=86;Dels=0.0;FS=5.738;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=11.98;ReadPosRankSum=0.308;SNPEFF_AMINO_ACID_CHANGE=L260F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39041386_39041545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    0/1:50,36:86:99:1060,0,1561
6    39045908    rs1076733    G    A    119.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
6    39046644    rs742762    A    C    563.09    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.75;QD=21.66;ReadPosRankSum=-1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    0/1:8,18:26:99:593,0,257
6    39046655    rs742761    C    T    579.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=31;Dels=0.0;FS=5.999;HRun=0;HaplotypeScore=0.9973;MQ=59.25;MQ0=0;MQRankSum=-2.31;QD=18.7;ReadPosRankSum=-0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    0/1:10,20:31:99:610,0,260
6    39048491    rs1126476    A    C    319.16    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=29;Dels=0.0;FS=3.473;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=11.01;ReadPosRankSum=-1.942;SNPEFF_AMINO_ACID_CHANGE=I400;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39048474_39048515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373256    GT:AD:DP:GQ:PL    0/1:14,15:29:99:349,0,417
6    39162206    rs2815098    A    G    459.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359534    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:492,39,0
6    39162227    rs1541816    G    A    486.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359534    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:519,39,0
6    39271539    rs1078911    G    A    363.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.44;MQ0=0;QD=33.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503878    GT:AD:DP:GQ:PL    1/1:0,11:11:33.05:397,33,0
6    39271656    rs7451024    G    A    822.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=29.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503878    GT:AD:DP:GQ:PL    1/1:0,28:28:63.21:855,63,0
6    39282690    .    G    T    56.40    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.83;MQ0=0;MQRankSum=-1.381;QD=2.97;ReadPosRankSum=2.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373227    GT:AD:DP:GQ:PL    0/1:9,10:19:86.40:86,0,196
6    39282748    rs11756070    G    A    454.37    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=33;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=1.9765;MQ=55.66;MQ0=0;MQRankSum=-0.02;QD=13.77;ReadPosRankSum=-1.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373227    GT:AD:DP:GQ:PL    0/1:16,17:33:99:484,0,412
6    39282806    rs11756091    G    T    923.37    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=56;Dels=0.0;FS=10.887;HRun=0;HaplotypeScore=2.7893;MQ=57.91;MQ0=0;MQRankSum=-1.569;QD=16.49;ReadPosRankSum=0.696;SNPEFF_AMINO_ACID_CHANGE=P189H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39282724_39282905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507712    GT:AD:DP:GQ:PL    0/1:22,34:56:99:953,0,682
6    39284050    rs1535500    G    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A277E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39283947_39284218;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437525    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:71,0,70
6    39284184    rs3734618    A    G    94.36    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=6.74;ReadPosRankSum=0.667;SNPEFF_AMINO_ACID_CHANGE=Y232;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39284078_39284218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373229    GT:AD:DP:GQ:PL    0/1:9,5:14:99:124,0,321
6    39284857    rs35099099    G    A    108.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.59;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373227    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,131
6    39289875    rs1109798    G    A    79.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=19.97;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373227    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:110,0,21
6    39290200    rs3734619    C    T    395.81    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DB;DP=31;Dels=0.0;FS=7.772;HRun=0;HaplotypeScore=5.4095;MQ=54.56;MQ0=0;MQRankSum=1.882;QD=12.77;ReadPosRankSum=-0.509;SNPEFF_AMINO_ACID_CHANGE=A39;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39290104_39290316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373227    GT:AD:DP:GQ:PL    0/1:14,17:31:99:426,0,145
6    39513618    rs6928537    A    G    62.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.51;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287152    GT:AD:DP:GQ:PL    0/1:2,3:5:62.76:93,0,63
6    39545809    rs3830834    G    GA    434.17    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.667;DB;DP=38;FS=0.0;HRun=8;HaplotypeScore=107.1985;IndelType=I;MQ=59.68;MQ0=0;MQRankSum=-0.655;QD=11.43;ReadPosRankSum=0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287152    GT:AD:DP:GQ:PL    0/1:21,17:38:99:473,0,432
6    39563730    rs7738728    C    T    34.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.84;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287152    GT:AD:DP:GQ:PL    0/1:3,2:5:64.17:64,0,113
6    39602505    rs62403326    C    T    172.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.26;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482238    GT:AD:DP:GQ:PL    0/1:7,6:13:99:202,0,243
6    39682367    rs303701    G    A    64.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=6.47;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287152    GT:AD:DP:GQ:PL    0/1:7,3:10:94.69:95,0,221
6    39688367    rs10947834    T    C    107.42    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.896;QD=9.77;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287152    GT:AD:DP:GQ:PL    0/1:7,4:11:99:137,0,208
6    39693271    rs10947835    C    G    465.04    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.837;DB;DP=29;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.23;MQ0=0;MQRankSum=-0.417;QD=16.04;ReadPosRankSum=0.987;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287152    GT:AD:DP:GQ:PL    0/1:13,16:29:99:495,0,342
6    39828593    rs2504099    A    T    1019.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.11;MQ0=0;QD=39.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1053,78,0
6    39828862    rs2504098    A    C    1066.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=A109;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39828704_39828937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405961    GT:AD:DP:GQ:PL    1/1:0,30:31:81.27:1100,81,0
6    39832111    rs2504787    A    G    250.11    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=27.79;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405961    GT:AD:DP:GQ:PL    0/1:1,8:9:12.92:280,0,13
6    39832363    rs2504094    C    G    375.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=28.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405961    GT:AD:DP:GQ:PL    1/1:2,11:13:33.09:409,33,0
6    39842914    rs2504793    C    T    372.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=57.87;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:406,30,0
6    39846137    rs2504086    A    G    1598.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1632,129,0
6    39847279    rs2504797    G    A    1956.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8581;MQ=59.66;MQ0=0;MQRankSum=-1.299;QD=29.2;ReadPosRankSum=-1.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491083    GT:AD:DP:GQ:PL    1/1:1,66:67:99:1989,112,0
6    39851441    rs3003928    G    C    126.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491083    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
6    39851818    rs3003929    G    A    2442.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=K642;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39851738_39851845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2475,196,0
6    39852037    rs3003930    T    C    67.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
6    39855019    rs3003944    A    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    39855112    rs3003945    T    G    379.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:413,30,0
6    39855427    rs3008810    C    T    609.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.99;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:643,51,0
6    39855490    rs5875688    C    CTGGA    647.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=42.2673;IndelType=I;MQ=43.65;MQ0=0;QD=71.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:690,27,0
6    39856689    rs3003946    A    G    174.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
6    39864730    rs3008815    C    T    978.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=I828;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39864588_39864756;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1012,75,0
6    39865047    rs3004067    T    C    3414.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=A869;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_39864951_39865058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3415,274,0
6    39866805    rs3830992    A    AACAATGGGC    1445.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=58.7802;IndelType=I;MQ=36.02;MQ0=0;QD=120.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MOCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373181    GT:AD:DP:GQ:PL    1/1:1,11:12:33.11:1488,33,0
6    39869066    rs882559    G    C    6279.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.361;DB;DP=190;Dels=0.0;FS=4.61;HRun=0;HaplotypeScore=3.8904;MQ=59.61;MQ0=0;MQRankSum=-0.843;QD=33.05;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MOCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308559    GT:AD:DP:GQ:PL    1/1:1,188:190:99:6279,422,0
6    39869952    rs3004070    T    A    86.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MOCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308559    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
6    39877344    rs2984443    C    T    354.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274867    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:388,30,0
6    39895045    rs185583357    G    A    287.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=30;Dels=0.0;FS=3.471;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.832;QD=9.57;ReadPosRankSum=1.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MOCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308559    GT:AD:DP:GQ:PL    0/1:18,12:30:99:317,0,610
6    39895410    rs3008822    T    C    118.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=19.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MOCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308559    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:151,12,0
6    40312346    rs13203076    T    C    792.50    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=66;Dels=0.0;FS=7.487;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.213;QD=12.01;ReadPosRankSum=-0.103;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-535K1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448559    GT:AD:DP:GQ:PL    0/1:31,35:66:99:822,0,886
6    40313602    rs9462610    T    C    109.59    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.175;QD=5.48;ReadPosRankSum=0.436;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-535K1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448559    GT:AD:DP:GQ:PL    0/1:15,5:20:99:140,0,545
6    40313631    rs3839623    C    CT    260.69    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=85.1501;IndelType=I;MQ=58.33;MQ0=0;MQRankSum=-2.11;QD=9.31;ReadPosRankSum=-0.483;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-535K1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448559    GT:AD:DP:GQ:PL    0/1:20,8:28:99:300,0,723
6    40313785    rs34913585    G    C    807.38    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8265;MQ=59.07;MQ0=0;MQRankSum=-1.611;QD=10.77;ReadPosRankSum=-1.523;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-535K1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448559    GT:AD:DP:GQ:PL    0/1:43,32:75:99:837,0,1372
6    40313903    rs34540613    A    C    146.57    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.78;MQ0=0;MQRankSum=-0.328;QD=7.71;ReadPosRankSum=-0.702;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-535K1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448559    GT:AD:DP:GQ:PL    0/1:12,7:19:99:177,0,445
6    40321473    rs11752896    A    G    402.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=36.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-535K1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448559    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:435,33,0
6    40346864    rs34598277    T    C    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-535K1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373170    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    40347103    rs111435424    G    GC    930.15    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.664;DB;DP=66;FS=1.035;HRun=7;HaplotypeScore=173.0448;IndelType=I;MQ=59.63;MQ0=0;MQRankSum=0.901;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-535K1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373170    GT:AD:DP:GQ:PL    0/1:34,32:66:99:969,0,709
6    40399446    rs7775772    T    C    743.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRFN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338305    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:776,57,0
6    40400288    rs61731040    C    T    584.31    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.879;MQ=58.55;MQ0=0;MQRankSum=1.926;QD=12.17;ReadPosRankSum=-1.947;SNPEFF_AMINO_ACID_CHANGE=A189T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_40399453_40400870;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRFN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338305    GT:AD:DP:GQ:PL    0/1:25,23:48:99:614,0,701
6    40998506    .    CA    C    313.11    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DP=20;FS=0.0;HRun=1;HaplotypeScore=63.2501;IndelType=D;MQ=61.07;MQ0=0;MQRankSum=1.674;QD=15.66;ReadPosRankSum=1.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244565    GT:AD:DP:GQ:PL    0/1:9,11:20:99:352,0,344
6    41052002    rs6908595    A    G    327.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C6orf130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480585    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:361,27,0
6    41162518    rs3747742    T    C    154.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=21;Dels=0.0;FS=4.561;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.336;QD=7.35;ReadPosRankSum=0.709;SNPEFF_AMINO_ACID_CHANGE=S144G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41162163_41162571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000483722    GT:AD:DP:GQ:PL    0/1:14,7:21:99:184,0,407
6    41166017    rs77093113    C    T    121.99    QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=2.052;DB;DP=113;Dels=0.0;FS=2.787;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=1;MQRankSum=-4.259;QD=1.08;ReadPosRankSum=2.005;SNPEFF_AMINO_ACID_CHANGE=R69Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41165847_41166167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000483722    GT:AD:DP:GQ:PL    0/1:99,14:113:99:152,0,3089
6    41185430    rs1968871    T    C    3211.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=33.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP1-229K20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332842    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3244,250,0
6    41185474    rs9349180    G    A    3778.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=58.72;MQ0=0;QD=35.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP1-229K20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332842    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3779,280,0
6    41185605    rs9349181    C    A    3122.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=35.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP1-229K20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332842    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3156,235,0
6    41185934    rs4406227    G    A    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP1-229K20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332842    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
6    41196156    rs2803496    C    T    33.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.92;MQ0=0;QD=11.23;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_41196062_41196228;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,3:3:6:65,6,0
6    41196605    rs9369265    T    C    3761.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=W73R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41196452_41196782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3761,301,0
6    41196727    rs2101269    C    T    3335.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=N113;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41196452_41196782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3335,244,0
6    41196888    rs2627557    A    C    591.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:625,48,0
6    41196956    rs1843099    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    41197034    rs1843097    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.48;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    41197516    rs1825406    C    G    136.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:169,12,0
6    41197785    rs9296357    T    C    1924.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.197;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.703;QD=29.61;ReadPosRankSum=-1.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:2,63:65:99:1958,106,0
6    41197857    rs7769759    C    T    1679.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7565;MQ=59.56;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=T168I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41197800_41197860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1712,129,0
6    41197991    rs7774170    G    A    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
6    41204329    rs9349186    A    T    665.08    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.213;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.215;QD=20.15;ReadPosRankSum=0.411;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341495    GT:AD:DP:GQ:PL    0/1:10,23:33:99:695,0,298
6    41303592    rs9394782    T    C    30.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.07;ReadPosRankSum=-0.72;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_41303393_41303666;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373083    GT:AD:DP:GQ:PL    0/1:4,2:6:60.38:60,0,143
6    41309552    rs2236369    T    C    943.72    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.928;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.083;QD=14.98;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=S139P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41309532_41309667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373083    GT:AD:DP:GQ:PL    0/1:24,39:63:99:974,0,742
6    41309618    rs34456049    G    A    630.80    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.87;DB;DP=41;Dels=0.0;FS=3.255;HRun=1;HaplotypeScore=3.0564;MQ=57.71;MQ0=0;MQRankSum=1.173;QD=15.39;ReadPosRankSum=0.704;SNPEFF_AMINO_ACID_CHANGE=G161R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41309532_41309667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373083    GT:AD:DP:GQ:PL    0/1:17,24:41:99:661,0,361
6    41309698    rs2236370    G    C    675.29    PASS    AB=0.281;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.084;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.467;QD=21.1;ReadPosRankSum=0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373083    GT:AD:DP:GQ:PL    0/1:9,23:32:99:705,0,242
6    41533579    rs2104506    C    A    1709.24    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.121;DB;DP=100;Dels=0.0;FS=6.986;HRun=0;HaplotypeScore=9.6426;MQ=54.96;MQ0=0;MQRankSum=2.341;QD=17.09;ReadPosRankSum=-0.394;SNPEFF_AMINO_ACID_CHANGE=A27;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41533487_41533702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307972    GT:AD:DP:GQ:PL    0/1:44,56:100:99:1739,0,908
6    41558952    rs9471605    C    T    74.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.66;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307972    GT:AD:DP:GQ:PL    0/1:3,4:7:99:105,0,102
6    41562446    rs41273786    C    T    73.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.39;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307972    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:104,0,30
6    41562530    rs9367109    A    G    287.88    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.03;MQ0=0;MQRankSum=0.403;QD=11.99;ReadPosRankSum=-1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307972    GT:AD:DP:GQ:PL    0/1:10,14:24:99:318,0,304
6    41620973    rs6932839    G    A    75.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=4.74;ReadPosRankSum=-1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441667    GT:AD:DP:GQ:PL    0/1:9,6:16:99:106,0,261
6    41620975    rs2842657    A    G    78.89    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.488;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=4.64;ReadPosRankSum=-2.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441667    GT:AD:DP:GQ:PL    0/1:9,7:17:99:109,0,283
6    41621005    rs2235838    C    T    402.70    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.129;DB;DP=27;Dels=0.0;FS=1.856;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.003;QD=14.91;ReadPosRankSum=-0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDFI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441667    GT:AD:DP:GQ:PL    0/1:13,14:27:99:433,0,371
6    41652514    rs2073158    C    T    553.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.77;SNPEFF_AMINO_ACID_CHANGE=A276;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41651716_41652816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFEB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406563    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:587,45,0
6    41652604    rs1062966    T    C    151.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.2;SNPEFF_AMINO_ACID_CHANGE=P246;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41651716_41652816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFEB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406563    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:184,15,0
6    41655005    rs2073157    G    A    268.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419574    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:302,24,0
6    41657328    rs2073156    A    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419788    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
6    41721617    rs55967101    T    C    466.35    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.853;DB;DP=22;Dels=0.0;FS=2.046;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.375;QD=21.2;ReadPosRankSum=1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415707    GT:AD:DP:GQ:PL    0/1:8,14:22:99:496,0,234
6    41740418    rs2275748    T    C    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=55.16;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422888    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:70,0,63
6    41753084    rs9394831    C    T    389.41    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=20;Dels=0.0;FS=4.481;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.426;QD=19.47;ReadPosRankSum=-0.158;SNPEFF_AMINO_ACID_CHANGE=L130;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41753075_41753278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRICKLE4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359201    GT:AD:DP:GQ:PL    0/1:7,13:20:99:419,0,185
6    41753380    rs3747753    G    T    76.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.69;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRICKLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463606    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,100
6    41754370    rs10947987    C    T    153.86    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6642;MQ=50.65;MQ0=0;MQRankSum=-0.742;QD=19.23;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=S287L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41754178_41754449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRICKLE4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394259    GT:AD:DP:GQ:PL    0/1:1,6:8:15.07:184,0,15
6    41754573    .    C    CCTT    2537.12    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.782;DP=96;FS=2.789;HRun=0;HaplotypeScore=509.3111;IndelType=I;MQ=56.5;MQ0=0;MQRankSum=-0.41;QD=26.43;ReadPosRankSum=-0.338;SNPEFF_AMINO_ACID_CHANGE=-248L;SNPEFF_CODON_CHANGE=-/CTT;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_6_41754500_41754867;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRICKLE4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394260    GT:AD:DP:GQ:PL    0/1:58,38:96:99:2576,0,633
6    41754576    rs28403583    C    T    1302.22    HaplotypeScoreFilter13    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=2.339;DB;DP=94;Dels=0.0;FS=2.887;HRun=1;HaplotypeScore=48.6256;MQ=56.42;MQ0=0;MQRankSum=2.139;QD=13.85;ReadPosRankSum=0.004;SNPEFF_AMINO_ACID_CHANGE=L248;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41754500_41754867;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PRICKLE4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394260    GT:AD:DP:GQ:PL    0/1:41,53:94:99:1332,0,886
6    41773322    rs2153878    G    A    565.53    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.299;DB;DP=44;Dels=0.0;FS=8.272;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.302;QD=12.85;ReadPosRankSum=2.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423567    GT:AD:DP:GQ:PL    0/1:25,19:44:99:596,0,676
6    41773576    rs2185798    G    C    490.04    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.345;DB;DP=32;Dels=0.0;FS=1.444;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.02;QD=15.31;ReadPosRankSum=0.75;SNPEFF_AMINO_ACID_CHANGE=L382;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41773366_41774749;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP49;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297229    GT:AD:DP:GQ:PL    0/1:13,19:32:99:520,0,396
6    41774685    .    C    G    127.36    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DP=56;Dels=0.0;FS=37.347;HRun=3;HaplotypeScore=0.9997;MQ=47.12;MQ0=0;MQRankSum=-3.237;QD=2.27;ReadPosRankSum=1.662;SNPEFF_AMINO_ACID_CHANGE=A13P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41773366_41774749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297229    GT:AD:DP:GQ:PL    0/1:30,26:56:99:157,0,750
6    41888827    rs2274578    C    G    294.65    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.953;QD=18.42;ReadPosRankSum=0.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482361    GT:AD:DP:GQ:PL    0/1:7,9:16:99:325,0,234
6    41898096    rs2479726    A    G    252.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BYSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475702    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
6    41903782    rs1051130    A    C    151.07    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=2.012;DB;DP=27;Dels=0.0;FS=11.977;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=1.079;QD=5.6;ReadPosRankSum=0.904;SNPEFF_AMINO_ACID_CHANGE=S178A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_41902694_41903845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCND3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372988    GT:AD:DP:GQ:PL    0/1:21,6:27:99:181,0,604
6    41905174    rs2479717    T    A    904.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BYSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230340    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:938,69,0
6    42016246    rs10456506    T    C    219.73    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=17;Dels=0.0;FS=1.957;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.299;QD=12.93;ReadPosRankSum=-0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511642    GT:AD:DP:GQ:PL    0/1:8,9:17:99:250,0,211
6    42018878    rs7770149    T    C    255.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372977    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
6    42018883    rs11967378    G    T    63.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=9.14;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372977    GT:AD:DP:GQ:PL    0/1:4,3:7:93.94:94,0,128
6    42023099    rs4523084    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486070    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
6    42023521    rs9471746    A    G    133.37    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486070    GT:AD:DP:GQ:PL    0/1:1,5:6:23.18:163,0,23
6    42023618    .    A    ATAC    424.93    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DP=15;FS=0.0;HRun=0;HaplotypeScore=46.597;IndelType=I;MQ=53.52;MQ0=0;MQRankSum=-1.625;QD=28.33;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486070    GT:AD:DP:GQ:PL    0/1:10,5:15:99:464,0,227
6    42025318    rs12208813    G    A    207.81    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.647;QD=7.42;ReadPosRankSum=-0.743;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472818    GT:AD:DP:GQ:PL    0/1:18,10:28:99:238,0,584
6    42035927    rs2492925    T    C    83.76    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.003;QD=5.98;ReadPosRankSum=0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482926    GT:AD:DP:GQ:PL    0/1:10,4:14:99:114,0,283
6    42036395    rs2492926    A    C    813.30    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.744;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.409;QD=10.29;ReadPosRankSum=0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482926    GT:AD:DP:GQ:PL    0/1:44,34:79:99:843,0,1272
6    42044945    rs3800286    G    A    888.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=G337D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42044838_42044977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372982    GT:AD:DP:GQ:PL    1/1:0,28:28:72.20:921,72,0
6    42075461    rs9381137    G    A    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
6    42077870    rs9471765    A    G    192.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341865    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:226,18,0
6    42110171    rs9688934    C    G    55.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.59;SNPEFF_AMINO_ACID_CHANGE=K4N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42110038_42110182;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341865    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
6    42110263    rs6911399    T    C    121.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341865    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
6    42123317    rs2207730    A    C    283.68    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.482;DB;DP=19;Dels=0.0;FS=1.808;HRun=1;HaplotypeScore=0.9159;MQ=58.78;MQ0=0;MQRankSum=-0.219;QD=14.93;ReadPosRankSum=0.132;SNPEFF_AMINO_ACID_CHANGE=M1L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_START;SNPEFF_EXON_ID=exon_6_42123279_42123331;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-139D8.6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372963    GT:AD:DP:GQ:PL    0/1:6,13:19:99:314,0,161
6    42146298    rs1467448    G    C    174.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=19.36;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418175    GT:AD:DP:GQ:PL    0/1:3,6:9:92.13:204,0,92
6    42153609    rs9471799    C    T    337.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.496;DB;DP=26;Dels=0.0;FS=1.721;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.245;QD=12.96;ReadPosRankSum=1.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230361    GT:AD:DP:GQ:PL    0/1:13,13:26:99:367,0,334
6    42176451    rs6936290    G    A    72.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.16;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000053468    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:103,0,21
6    42176544    rs34547023    C    T    31.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.47;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000053468    GT:AD:DP:GQ:PL    0/1:4,3:7:61.26:61,0,147
6    42182183    rs1884317    C    T    106.38    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000053468    GT:AD:DP:GQ:PL    0/1:3,5:8:75.04:136,0,75
6    42185564    rs9471809    A    C    171.81    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=20;Dels=0.0;FS=13.03;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.612;QD=8.59;ReadPosRankSum=-2.082;SNPEFF_AMINO_ACID_CHANGE=G8;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42185540_42185603;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000053468    GT:AD:DP:GQ:PL    0/1:11,9:20:99:202,0,334
6    42203748    rs9471815    A    G    43.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=7.19;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRERF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340840    GT:AD:DP:GQ:PL    0/1:3,3:6:73.11:73,0,106
6    42210936    rs3830886    T    TG    337.32    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=3.422;DB;DP=26;FS=0.0;HRun=4;HaplotypeScore=100.5325;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.411;QD=12.97;ReadPosRankSum=0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRERF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340840    GT:AD:DP:GQ:PL    0/1:15,11:26:99:376,0,401
6    42210951    rs2295276    C    G    428.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=35;Dels=0.0;FS=2.026;HRun=0;HaplotypeScore=2.5676;MQ=60.0;MQ0=0;MQRankSum=-1.195;QD=12.23;ReadPosRankSum=-0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRERF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340840    GT:AD:DP:GQ:PL    0/1:21,14:35:99:458,0,685
6    42224546    rs2295275    A    T    635.66    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=13.24;ReadPosRankSum=1.055;SNPEFF_AMINO_ACID_CHANGE=C751S;SNPEFF_CODON_CHANGE=Tgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42224466_42224569;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRERF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340840    GT:AD:DP:GQ:PL    0/1:22,25:48:99:666,0,685
6    42225063    rs35367272    C    T    74.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRERF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340840    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
6    42541802    rs16895843    G    C    772.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372899    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:806,60,0
6    42571346    rs16895863    A    T    1960.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9717;MQ=59.2;MQ0=0;QD=37.7;SNPEFF_AMINO_ACID_CHANGE=S184;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42571326_42571456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372899    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1993,144,0
6    42573285    rs7745976    A    G    56.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372899    GT:AD:DP:GQ:PL    1/1:0,3:3:8.99:89,9,0
6    42600319    rs5014584    A    G    875.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_AMINO_ACID_CHANGE=L437;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42600290_42600453;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372899    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:909,69,0
6    42607771    rs2747119    T    A    37.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:69,6,0
6    42607841    rs12204274    C    T    314.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:347,27,0
6    42611872    rs12198323    A    G    1438.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.89;MQ0=0;QD=37.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1471,114,0
6    42612312    rs7767888    C    T    1276.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.636;QD=35.46;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:1,35:36:96.30:1310,96,0
6    42613379    rs3749900    A    G    1349.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1382,99,0
6    42633368    rs16895923    A    G    453.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:486,36,0
6    42638354    rs112539800    TACATA    T    2064.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=224.6131;IndelType=D;MQ=54.53;MQ0=0;QD=55.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:1,36:37:99:2107,108,0
6    42644062    rs2144083    A    G    960.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,25:25:75.23:993,75,0
6    42646518    rs2295153    T    A    1055.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,29:29:84.23:1088,84,0
6    42650766    rs34240626    G    GT    856.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=5;HaplotypeScore=46.5314;IndelType=I;MQ=61.86;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:899,69,0
6    42652667    rs434505    G    A    540.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:573,45,0
6    42658752    rs373341    T    C    1402.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.52;QD=32.62;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372883    GT:AD:DP:GQ:PL    1/1:1,42:43:88.65:1436,89,0
6    42666061    rs434102    T    C    1615.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.63;MQ0=0;QD=31.68;SNPEFF_AMINO_ACID_CHANGE=D338G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42664340_42666245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230381    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1649,120,0
6    42666145    rs425876    C    T    1448.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.21;SNPEFF_AMINO_ACID_CHANGE=R310K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42664340_42666245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230381    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1481,114,0
6    42666164    rs390659    G    C    1385.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=Q304E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42664340_42666245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230381    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1418,111,0
6    42666293    rs41273820    G    A    858.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230381    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:891,69,0
6    42666365    rs389999    G    C    276.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230381    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:309,24,0
6    42672416    rs3818086    A    T    1069.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230381    GT:AD:DP:GQ:PL    1/1:0,37:37:90.24:1102,90,0
6    42689755    rs7764439    A    G    1709.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_AMINO_ACID_CHANGE=V106;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42689492_42690312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230381    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1742,132,0
6    42713618    rs2234026    A    G    1323.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9819;MQ=59.45;MQ0=0;MQRankSum=-1.272;QD=31.5;ReadPosRankSum=0.341;SNPEFF_AMINO_ACID_CHANGE=V65A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42712239_42713838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244625    GT:AD:DP:GQ:PL    1/1:2,40:42:66.57:1356,67,0
6    42853842    rs2179719    A    G    1264.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=37.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408925    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1297,99,0
6    42891947    rs45591034    C    T    212.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.547;DB;DP=33;Dels=0.0;FS=5.859;HRun=2;HaplotypeScore=1.7005;MQ=59.3;MQ0=0;MQRankSum=1.111;QD=6.44;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304672    GT:AD:DP:GQ:PL    0/1:22,11:33:99:242,0,568
6    42905235    rs9471968    A    G    74.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=15.0;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNPY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372836    GT:AD:DP:GQ:PL    0/1:2,3:5:61.03:105,0,61
6    42923902    rs12524845    T    C    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
6    42924041    rs112122607    C    T    569.49    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=37;Dels=0.0;FS=6.303;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.594;QD=15.39;ReadPosRankSum=-1.112;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:17,20:37:99:599,0,551
6    42924193    rs13215983    C    T    1229.58    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.074;DB;DP=125;Dels=0.0;FS=8.764;HRun=0;HaplotypeScore=1.6649;MQ=59.82;MQ0=0;MQRankSum=1.228;QD=9.84;ReadPosRankSum=2.045;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:82,43:125:99:1260,0,2483
6    42924247    rs13216214    G    A    722.47    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=3.424;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.76;MQ0=0;MQRankSum=-0.051;QD=7.37;ReadPosRankSum=-0.311;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:69,29:98:99:752,0,2007
6    42924424    rs4714640    G    T    566.73    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.932;DB;DP=54;Dels=0.0;FS=1.064;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.33;QD=10.5;ReadPosRankSum=-0.035;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:29,25:54:99:597,0,984
6    42924488    rs111414647    CA    C    404.98    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=4.494;DB;DP=35;FS=7.935;HRun=4;HaplotypeScore=141.4774;IndelType=D;MQ=59.34;MQ0=0;MQRankSum=-0.491;QD=11.57;ReadPosRankSum=-1.435;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:20,15:35:99:444,0,618
6    42924622    rs4714641    A    G    40.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=10.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:71,0,33
6    42929839    rs7760250    G    A    82.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.876;QD=8.26;ReadPosRankSum=-1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244546    GT:AD:DP:GQ:PL    0/1:5,5:10:99:113,0,164
6    42931224    rs4987173    G    A    225.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=24;Dels=0.0;FS=1.685;HRun=0;HaplotypeScore=0.9734;MQ=59.22;MQ0=0;MQRankSum=1.014;QD=9.4;ReadPosRankSum=1.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244546    GT:AD:DP:GQ:PL    0/1:15,9:24:99:256,0,504
6    42931261    rs2296804    C    G    345.47    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.274;DB;DP=40;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.192;QD=8.64;ReadPosRankSum=-2.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244546    GT:AD:DP:GQ:PL    0/1:23,17:40:99:375,0,750
6    42932200    rs1129187    G    T    407.56    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DB;DP=34;Dels=0.0;FS=1.34;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.983;QD=11.99;ReadPosRankSum=1.466;SNPEFF_AMINO_ACID_CHANGE=P939Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42931608_42932209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304611    GT:AD:DP:GQ:PL    0/1:16,18:34:99:438,0,475
6    42932202    rs1129186    C    T    448.16    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.085;DB;DP=29;Dels=0.0;FS=1.447;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.686;QD=15.45;ReadPosRankSum=0.598;SNPEFF_AMINO_ACID_CHANGE=E938;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_42931608_42932209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304611    GT:AD:DP:GQ:PL    0/1:12,17:29:99:478,0,375
6    42932715    rs2274517    C    T    479.56    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=34;Dels=0.0;FS=5.449;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=14.1;ReadPosRankSum=-0.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:17,16:34:99:510,0,472
6    42934500    rs2274514    C    T    2230.55    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=141;Dels=0.0;FS=3.032;HRun=0;HaplotypeScore=0.7887;MQ=58.85;MQ0=0;MQRankSum=-0.229;QD=15.82;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:66,75:141:99:2261,0,2030
6    42934620    rs3818554    C    T    909.01    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.979;DB;DP=71;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=1.6809;MQ=58.75;MQ0=0;MQRankSum=-0.383;QD=12.8;ReadPosRankSum=-0.147;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:39,32:71:99:939,0,1260
6    42934818    rs4714644    T    C    74.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.95;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:2,3:5:58.78:105,0,59
6    42935998    rs9471982    G    A    478.53    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DB;DP=26;Dels=0.0;FS=2.098;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=18.41;ReadPosRankSum=0.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372808    GT:AD:DP:GQ:PL    0/1:10,16:26:99:509,0,302
6    42942451    rs9296407    G    A    61.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.38;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244546    GT:AD:DP:GQ:PL    0/1:2,3:5:42.91:92,0,43
6    42942779    rs9986447    A    G    818.81    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.123;DB;DP=52;Dels=0.0;FS=7.209;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.047;QD=15.75;ReadPosRankSum=-1.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244546    GT:AD:DP:GQ:PL    0/1:24,27:52:99:849,0,767
6    42989057    rs9296409    T    C    77.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244670    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
6    43006739    rs144154816    G    T    280.65    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.357;DB;DP=25;Dels=0.0;FS=6.628;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.606;QD=11.23;ReadPosRankSum=1.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265348    GT:AD:DP:GQ:PL    0/1:12,13:25:99:311,0,425
6    43014298    rs9394939    T    C    1185.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_AMINO_ACID_CHANGE=Q813;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43014249_43014339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265348    GT:AD:DP:GQ:PL    1/1:0,36:37:93.29:1218,93,0
6    43014299    rs9381231    T    C    1146.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_AMINO_ACID_CHANGE=Q813R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43014249_43014339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265348    GT:AD:DP:GQ:PL    1/1:0,37:37:93.27:1180,93,0
6    43014582    rs55724493    G    A    395.52    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.305;DB;DP=26;Dels=0.0;FS=9.048;HRun=0;HaplotypeScore=1.6006;MQ=59.11;MQ0=0;MQRankSum=-0.416;QD=15.21;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265348    GT:AD:DP:GQ:PL    0/1:11,15:26:99:426,0,320
6    43106824    rs45484692    G    A    259.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=18;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;MQRankSum=1.288;QD=14.44;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230419    GT:AD:DP:GQ:PL    0/1:8,10:18:99:290,0,255
6    43109751    rs6905948    G    A    185.58    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.718;DB;DP=19;Dels=0.0;FS=8.218;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=9.77;ReadPosRankSum=1.225;SNPEFF_AMINO_ACID_CHANGE=G487;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43109669_43109819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349241    GT:AD:DP:GQ:PL    0/1:12,7:19:99:216,0,394
6    43111445    rs3737185    T    C    37.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419972    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
6    43112382    rs7759437    C    T    392.76    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=15.71;ReadPosRankSum=2.366;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419972    GT:AD:DP:GQ:PL    0/1:12,13:25:99:423,0,348
6    43112866    .    G    A    32.90    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DP=16;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=6.5877;MQ=43.31;MQ0=0;MQRankSum=-1.954;QD=2.06;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419972    GT:AD:DP:GQ:PL    0/1:7,9:16:62.89:63,0,95
6    43114211    rs144822301    C    CT    346.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=24.4551;IndelType=I;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419972    GT:AD:DP:GQ:PL    1/1:2,8:10:27.09:388,27,0
6    43154091    rs941849    C    G    1940.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=36.62;SNPEFF_AMINO_ACID_CHANGE=L383;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43153693_43154193;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252050    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1974,147,0
6    43182657    rs1214714    G    A    153.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502937    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:186,15,0
6    43188716    rs2756178    A    T    111.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.96;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230431    GT:AD:DP:GQ:PL    0/1:1,4:7:10.65:142,0,11
6    43190135    rs62417521    C    T    716.52    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.052;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6649;MQ=60.0;MQ0=0;MQRankSum=1.293;QD=14.62;ReadPosRankSum=0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230431    GT:AD:DP:GQ:PL    0/1:22,26:49:99:747,0,560
6    43227141    rs111342015    G    A    68.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=53.95;MQ0=0;MQRankSum=1.3;QD=8.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259750    GT:AD:DP:GQ:PL    0/1:4,4:8:60.85:98,0,61
6    43237209    rs56071372    A    G    32.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.69;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259750    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:62,0,31
6    43250387    rs6936397    G    C    977.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259750    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1010,75,0
6    43251912    rs3800297    A    G    280.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_AMINO_ACID_CHANGE=K1145R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43250465_43252050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259750    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
6    43252029    rs3800298    T    C    393.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=23.14;SNPEFF_AMINO_ACID_CHANGE=L1184S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43250465_43252050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259750    GT:AD:DP:GQ:PL    1/1:0,17:17:36.09:426,36,0
6    43252141    rs7763131    T    C    35.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=65.19;MQ0=0;QD=17.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259750    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
6    43269029    rs1574430    A    C    284.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DB;DP=22;Dels=0.0;FS=10.65;HRun=0;HaplotypeScore=0.9665;MQ=58.95;MQ0=0;MQRankSum=0.591;QD=12.92;ReadPosRankSum=1.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274990    GT:AD:DP:GQ:PL    0/1:11,11:22:99:314,0,349
6    43269179    rs2841648    C    A    60.60    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=5.51;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274990    GT:AD:DP:GQ:PL    0/1:7,4:11:90.59:91,0,253
6    43269180    rs56401710    C    A    56.14    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=5.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274990    GT:AD:DP:GQ:PL    0/1:7,4:11:86.14:86,0,237
6    43270097    rs2651184    T    C    684.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=A100;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43269938_43270152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436107    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:717,60,0
6    43270151    rs2270860    C    T    67.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=7.54;ReadPosRankSum=-1.001;SNPEFF_AMINO_ACID_CHANGE=S118;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43269938_43270152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436107    GT:AD:DP:GQ:PL    0/1:6,3:9:97.87:98,0,159
6    43270326    rs2841646    A    G    112.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274990    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
6    43271534    rs2841645    C    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274990    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    43273604    rs2242416    A    G    608.49    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.567;DB;DP=43;Dels=0.0;FS=12.058;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.642;QD=14.15;ReadPosRankSum=-0.617;SNPEFF_AMINO_ACID_CHANGE=I188T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43273210_43273613;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372569    GT:AD:DP:GQ:PL    0/1:22,21:43:99:638,0,680
6    43276388    rs12193537    G    C    234.58    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.78;MQ0=0;MQRankSum=0.578;QD=12.35;ReadPosRankSum=1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372574    GT:AD:DP:GQ:PL    0/1:10,9:19:99:265,0,306
6    43276390    rs2254303    G    A    282.26    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.78;MQ0=0;MQRankSum=0.844;QD=14.86;ReadPosRankSum=-1.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372574    GT:AD:DP:GQ:PL    0/1:9,10:19:99:312,0,266
6    43299432    rs76343162    C    T    220.67    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=20.06;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF318;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318149    GT:AD:DP:GQ:PL    0/1:4,7:11:99:251,0,133
6    43299719    rs2279088    A    C    31.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.21;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF318;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361428    GT:AD:DP:GQ:PL    0/1:4,2:6:61.26:61,0,147
6    43305520    rs35650765    C    T    639.59    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=2.034;DB;DP=77;Dels=0.0;FS=0.953;HRun=0;HaplotypeScore=2.8924;MQ=59.7;MQ0=0;MQRankSum=1.128;QD=8.31;ReadPosRankSum=-0.884;SNPEFF_AMINO_ACID_CHANGE=P2072;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43303808_43308240;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF318;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361428    GT:AD:DP:GQ:PL    0/1:51,25:77:99:670,0,1544
6    43306346    rs1459675    A    G    1565.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_AMINO_ACID_CHANGE=V1797A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43303808_43308240;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF318;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361428    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1598,117,0
6    43308363    rs1563788    C    T    58.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=57.39;MQ0=0;MQRankSum=0.248;QD=6.53;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF318;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318149    GT:AD:DP:GQ:PL    0/1:6,3:9:88.75:89,0,213
6    43336771    rs9381238    C    T    51.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.09;SNPEFF_AMINO_ACID_CHANGE=R111;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43336705_43337181;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF318;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318149    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
6    43399837    rs700008    A    G    476.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372515    GT:AD:DP:GQ:PL    1/1:0,18:18:39.12:509,39,0
6    43401105    rs9394952    G    A    181.83    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=16;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.36;ReadPosRankSum=-0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502549    GT:AD:DP:GQ:PL    0/1:7,9:16:99:212,0,214
6    43409418    rs2487663    A    G    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244533    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    43414216    rs1214746    T    C    144.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=14.46;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372515    GT:AD:DP:GQ:PL    0/1:4,6:10:99:175,0,131
6    43414234    rs1214747    G    C    107.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=15.37;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372515    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,100
6    43483164    .    G    C    32.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=53.03;MQ0=0;MQRankSum=0.198;QD=4.7;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460903    GT:AD:DP:GQ:PL    0/1:5,2:7:62.93:63,0,165
6    43485283    rs2227301    C    T    183.64    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=22.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265351    GT:AD:DP:GQ:PL    0/1:2,6:8:59.38:214,0,59
6    43492578    rs2257082    G    A    743.15    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=53;Dels=0.0;FS=10.821;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.284;QD=14.02;ReadPosRankSum=1.437;SNPEFF_AMINO_ACID_CHANGE=Y1101;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43492569_43492706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265351    GT:AD:DP:GQ:PL    0/1:26,27:53:99:773,0,744
6    43494319    rs1150800    A    G    648    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.84;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450462    GT:AD:DP:GQ:PL    1/1:1,19:20:54.17:681,54,0
6    43496662    rs1106841    A    C    652.53    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=3.196;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;MQRankSum=0.406;QD=16.31;ReadPosRankSum=-2.329;SNPEFF_AMINO_ACID_CHANGE=R521;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43496566_43496663;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439465    GT:AD:DP:GQ:PL    0/1:19,21:40:99:683,0,570
6    43501580    rs78408458    C    CA    1268.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=6;HaplotypeScore=105.3861;IndelType=I;MQ=61.02;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304004    GT:AD:DP:GQ:PL    1/1:6,35:41:99:1311,105,0
6    43528441    rs1096699    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265351    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    43538208    rs35642078    T    C    1370.20    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.212;DB;DP=95;Dels=0.0;FS=10.659;HRun=0;HaplotypeScore=1.7297;MQ=59.51;MQ0=0;MQRankSum=-1.365;QD=14.42;ReadPosRankSum=0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398799    GT:AD:DP:GQ:PL    0/1:48,46:95:99:1400,0,1627
6    43594459    rs2396050    A    G    110.47    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.5;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GTPBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307114    GT:AD:DP:GQ:PL    0/1:8,5:13:99:140,0,292
6    43608386    rs7106    C    T    138.24    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.43;MQ0=0;MQRankSum=0.244;QD=11.52;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAD2L1BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508232    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,241
6    43624085    rs113893893    A    C    214.74    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.597;QD=19.52;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372154    GT:AD:DP:GQ:PL    0/1:4,7:11:99:245,0,125
6    43646401    rs2295948    A    G    301.26    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=17.72;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372116    GT:AD:DP:GQ:PL    0/1:7,10:17:99:331,0,219
6    43646447    rs2295949    T    G    125.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=12.51;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372116    GT:AD:DP:GQ:PL    0/1:5,5:10:99:155,0,157
6    43648803    rs2236345    A    G    265.56    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.76;DB;DP=23;Dels=0.0;FS=4.216;HRun=0;HaplotypeScore=1.445;MQ=58.99;MQ0=0;MQRankSum=-2.016;QD=11.55;ReadPosRankSum=1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372116    GT:AD:DP:GQ:PL    0/1:13,10:23:99:296,0,358
6    43648988    rs2236346    A    G    71.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.93;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372116    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,107
6    43738350    rs2010963    C    G    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VEGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476772    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
6    43745107    rs3024997    G    A    137.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=15.33;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VEGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230480    GT:AD:DP:GQ:PL    0/1:4,5:9:99:168,0,117
6    43746169    rs3025000    C    T    408.14    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=28;Dels=0.0;FS=4.246;HRun=1;HaplotypeScore=1.4725;MQ=56.62;MQ0=0;MQRankSum=-1.339;QD=14.58;ReadPosRankSum=1.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VEGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512683    GT:AD:DP:GQ:PL    0/1:9,19:28:99:438,0,213
6    43747371    rs3025007    C    T    214.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=15.33;ReadPosRankSum=-2.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VEGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476772    GT:AD:DP:GQ:PL    0/1:6,8:14:99:245,0,214
6    43747450    rs3025009    G    A    267.01    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=11.61;ReadPosRankSum=-1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VEGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476772    GT:AD:DP:GQ:PL    0/1:12,11:23:99:297,0,330
6    43748643    rs3025052    T    C    427.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=43.69;MQ0=0;QD=13.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=VEGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476772    GT:AD:DP:GQ:PL    1/1:0,31:31:36.11:460,36,0
6    43970602    rs117880737    G    C    173.73    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DB;DP=18;Dels=0.0;FS=6.99;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.405;QD=9.65;ReadPosRankSum=-0.752;SNPEFF_AMINO_ACID_CHANGE=P156;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43970418_43972877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C6orf223;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336600    GT:AD:DP:GQ:PL    0/1:10,8:18:99:204,0,205
6    43970658    rs115402675    T    A    224.88    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.326;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;MQRankSum=1.531;QD=7.75;ReadPosRankSum=0.879;SNPEFF_AMINO_ACID_CHANGE=L175H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_43970418_43972877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C6orf223;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336600    GT:AD:DP:GQ:PL    0/1:18,11:29:99:255,0,492
6    44081718    rs6883    G    A    2722.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.4462;MQ=59.03;MQ0=0;QD=37.82;SNPEFF_AMINO_ACID_CHANGE=F100;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44081194_44081946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372014    GT:AD:DP:GQ:PL    1/1:0,71:72:99:2756,208,0
6    44081987    rs4711767    T    C    2162.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372014    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2196,165,0
6    44102572    rs3841315    C    CT    617.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=42.8508;IndelType=I;MQ=62.28;MQ0=0;QD=44.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259746    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:660,42,0
6    44105929    rs59842359    C    T    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259746    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
6    44134581    rs914503    C    T    544.29    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.095;QD=16.01;ReadPosRankSum=1.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398776    GT:AD:DP:GQ:PL    0/1:16,18:34:99:574,0,437
6    44140054    rs57288791    T    TGGCTGCC    460.88    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.798;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=155.3966;IndelType=I;MQ=51.93;MQ0=0;MQRankSum=-2.324;QD=20.04;ReadPosRankSum=-0.132;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_44140039_44140157;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000398776    GT:AD:DP:GQ:PL    0/1:18,5:23:99:500,0,863
6    44141088    rs6938938    G    A    464.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.656;QD=18.6;ReadPosRankSum=-1.193;SNPEFF_AMINO_ACID_CHANGE=V266M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44140955_44141123;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398776    GT:AD:DP:GQ:PL    0/1:10,15:25:99:495,0,277
6    44145233    rs73429791    T    C    339.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=21.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398776    GT:AD:DP:GQ:PL    1/1:0,16:16:30.09:372,30,0
6    44149113    rs67257607    A    G    1026.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.18;MQ0=0;QD=34.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524554    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1060,81,0
6    44149153    rs143990221    CCA    C    401.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=157.4561;IndelType=D;MQ=55.69;MQ0=0;QD=28.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524554    GT:AD:DP:GQ:PL    1/1:1,13:14:36.11:444,36,0
6    44151490    rs7761137    G    A    2056.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.27;MQ0=0;QD=29.37;SNPEFF_AMINO_ACID_CHANGE=S728N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44151442_44151500;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398776    GT:AD:DP:GQ:PL    1/1:1,69:70:99:2089,159,0
6    44151765    rs13209117    G    A    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524554    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    44196995    rs324149    C    T    100.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.729;QD=10.06;ReadPosRankSum=1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313248    GT:AD:DP:GQ:PL    0/1:5,5:10:99:131,0,158
6    44217654    rs9367190    C    A    1920.08    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.474;DB;DP=107;Dels=0.0;FS=5.212;HRun=0;HaplotypeScore=2.9328;MQ=59.78;MQ0=0;MQRankSum=-1.488;QD=17.94;ReadPosRankSum=0.223;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC35B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341553    GT:AD:DP:GQ:PL    0/1:48,59:107:99:1950,0,1499
6    44217667    rs9381303    C    T    1654.70    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.707;DB;DP=101;Dels=0.0;FS=5.122;HRun=2;HaplotypeScore=1.8332;MQ=59.77;MQ0=0;MQRankSum=-1.37;QD=16.38;ReadPosRankSum=0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC35B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341553    GT:AD:DP:GQ:PL    0/1:45,56:101:99:1685,0,1443
6    44218120    rs13296    A    G    578.49    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.421;DB;DP=41;Dels=0.0;FS=2.755;HRun=0;HaplotypeScore=0.9578;MQ=56.14;MQ0=0;MQRankSum=0.665;QD=14.11;ReadPosRankSum=-0.874;SNPEFF_AMINO_ACID_CHANGE=K247;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44218028_44218336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353801    GT:AD:DP:GQ:PL    0/1:21,20:41:99:608,0,693
6    44219710    rs2070695    A    C    1107.80    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.499;DB;DP=74;Dels=0.0;FS=6.188;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.734;QD=14.97;ReadPosRankSum=-1.826;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441736    GT:AD:DP:GQ:PL    0/1:36,38:74:99:1138,0,1168
6    44220076    rs504697    T    C    190.23    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=19;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=10.01;ReadPosRankSum=-1.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441736    GT:AD:DP:GQ:PL    0/1:11,8:19:99:220,0,369
6    44240559    rs524533    C    T    1240.85    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=87;Dels=0.0;FS=4.053;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.492;QD=14.26;ReadPosRankSum=0.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM151B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430110    GT:AD:DP:GQ:PL    0/1:43,44:87:99:1271,0,1356
6    44245930    rs325018    C    T    531.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371503    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:565,42,0
6    44246049    rs325017    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371503    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    44247951    rs484757    T    G    2007.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.27;MQ0=0;QD=31.87;SNPEFF_AMINO_ACID_CHANGE=I188;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44247897_44248127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371503    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2041,156,0
6    44250165    rs516582    A    G    1285.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_AMINO_ACID_CHANGE=G326;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44249847_44250296;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371505    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1318,114,0
6    44253617    rs324142    C    T    392.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371503    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:426,36,0
6    44253749    rs324143    A    G    939.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_AMINO_ACID_CHANGE=R113;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44253701_44254269;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371503    GT:AD:DP:GQ:PL    1/1:0,34:34:81.22:973,81,0
6    44255459    rs324146    G    A    1179.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_AMINO_ACID_CHANGE=P35L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44255286_44255655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371505    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1212,90,0
6    44268135    rs325009    C    T    643.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491573    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:677,51,0
6    44268371    rs325008    T    C    1255.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=27.3;SNPEFF_AMINO_ACID_CHANGE=S957;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44267391_44268448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1289,105,0
6    44268806    rs34468603    T    TTGTC    615.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=26.9194;IndelType=I;MQ=51.77;MQ0=0;QD=68.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:2,7:9:24.08:658,24,0
6    44269023    rs325007    T    C    2240.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2274,175,0
6    44269193    rs498512    C    T    2910.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=K869;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44269118_44269201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,97:97:99:2944,235,0
6    44269640    rs325006    G    A    63.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.71;MQ0=0;QD=21.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,3:3:9:95,9,0
6    44269680    rs325005    C    G    95.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=23.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,4:4:12:128,12,0
6    44270365    rs325004    C    G    130.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=13.05;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    0/1:4,6:10:99:160,0,135
6    44270768    rs325002    G    T    691.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=58.84;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:724,57,0
6    44270936    rs325001    C    T    201.16    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=17;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=11.83;ReadPosRankSum=-1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    0/1:9,8:17:99:231,0,301
6    44273546    rs324137    A    C    1202.74    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.587;DB;DP=92;Dels=0.0;FS=4.739;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.647;QD=13.07;ReadPosRankSum=-1.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    0/1:50,42:92:99:1233,0,1564
6    44274451    rs161706    G    A    255.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:289,24,0
6    44274797    rs7740535    T    C    757.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:790,60,0
6    44275011    rs324136    T    C    778.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=27.81;SNPEFF_AMINO_ACID_CHANGE=I339V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44274986_44275131;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244571    GT:AD:DP:GQ:PL    1/1:0,28:28:66.16:812,66,0
6    44279111    rs9688508    A    G    1087.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.596;DB;DP=93;Dels=0.0;FS=0.767;HRun=1;HaplotypeScore=1.3123;MQ=59.7;MQ0=0;MQRankSum=0.016;QD=11.69;ReadPosRankSum=0.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM151B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430110    GT:AD:DP:GQ:PL    0/1:50,43:93:99:1117,0,1422
6    44279302    .    G    GA    267.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DP=16;FS=6.99;HRun=0;HaplotypeScore=78.4802;IndelType=I;MQ=58.83;MQ0=0;MQRankSum=2.431;QD=16.74;ReadPosRankSum=-0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM151B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430110    GT:AD:DP:GQ:PL    0/1:8,8:16:99:307,0,230
6    44279309    rs41282672    C    T    205.77    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.324;DB;DP=15;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.9989;MQ=58.75;MQ0=0;MQRankSum=0.34;QD=13.72;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM151B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430110    GT:AD:DP:GQ:PL    0/1:7,8:15:99:236,0,166
6    44280812    rs167772    C    T    333.41    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.23;MQ0=0;MQRankSum=-0.653;QD=18.52;ReadPosRankSum=-1.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM151B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430110    GT:AD:DP:GQ:PL    0/1:7,11:18:99:363,0,165
6    44320548    rs4714783    T    A    1122.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=S75;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_44320463_44320610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288390    GT:AD:DP:GQ:PL    1/1:0,32:33:84.26:1155,84,0
6    44357884    rs6908640    T    G    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371477    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
6    44360680    rs6942323    A    G    320.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371477    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:353,27,0
6    44387517    rs6923521    C    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371477    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    44392364    rs138772535    T    C    204.86    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=18;Dels=0.0;FS=3.14;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.025;QD=11.38;ReadPosRankSum=0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371477    GT:AD:DP:GQ:PL    0/1:11,7:18:99:235,0,327
6    44797271    rs9369514    C    A    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUPT3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306867    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,70
6    44921320    rs10948187    C    T    33.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUPT3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306867    GT:AD:DP:GQ:PL    0/1:4,2:6:63.53:64,0,113
6    44988149    rs1475534    C    T    112.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.11;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUPT3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306867    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,145
6    45073777    rs72869128    G    T    514.57    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.421;DB;DP=41;Dels=0.0;FS=1.48;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.754;QD=12.55;ReadPosRankSum=1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUPT3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306867    GT:AD:DP:GQ:PL    0/1:24,17:41:99:545,0,721
6    45073967    rs2396381    A    G    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUPT3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306867    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    45399458    rs2819856    A    G    42.07    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.254;QD=3.24;ReadPosRankSum=0.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RUNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352853    GT:AD:DP:GQ:PL    0/1:10,3:13:72.06:72,0,366
6    45870999    rs35735653    CAG    C    155.70    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=16;FS=2.858;HRun=0;HaplotypeScore=48.0183;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=1.03;QD=9.73;ReadPosRankSum=-1.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLIC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000185206    GT:AD:DP:GQ:PL    0/1:10,6:16:99:195,0,502
6    45922849    rs3734206    C    T    801.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLIC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000185206    GT:AD:DP:GQ:PL    1/1:0,28:28:63.21:834,63,0
6    45923126    rs6909306    A    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLIC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000185206    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
6    46047269    rs9381423    T    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLIC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000185206    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
6    46047458    rs3734207    C    T    1306.89    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=83;Dels=0.0;FS=1.99;HRun=1;HaplotypeScore=2.6147;MQ=59.78;MQ0=0;MQRankSum=0.55;QD=15.75;ReadPosRankSum=-2.05;SNPEFF_AMINO_ACID_CHANGE=E174;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46047440_46048132;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLIC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000185206    GT:AD:DP:GQ:PL    0/1:38,45:83:99:1337,0,1149
6    46048000    rs1416165    T    C    870.24    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.259;DB;DP=71;Dels=0.0;FS=2.458;HRun=1;HaplotypeScore=1.7337;MQ=59.47;MQ0=0;MQRankSum=-1.047;QD=12.26;ReadPosRankSum=-0.106;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_46047440_46048132;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLIC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000185206    GT:AD:DP:GQ:PL    0/1:33,38:71:99:900,0,871
6    46107312    rs11752816    G    A    592.35    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=4.159;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-1.01;QD=13.16;ReadPosRankSum=-0.376;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_46107288_46108146;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321037    GT:AD:DP:GQ:PL    0/1:22,23:45:99:622,0,595
6    46107752    rs7451713    C    G    3408.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.87;SNPEFF_AMINO_ACID_CHANGE=H144Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46107288_46108146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321037    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3408,250,0
6    46110821    rs7769902    A    G    173.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321037    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
6    46110844    rs35942390    T    TGA    438.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=44.697;IndelType=I;MQ=63.17;MQ0=0;QD=43.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321037    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:480,30,0
6    46128967    rs6941587    A    G    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=6.32;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492313    GT:AD:DP:GQ:PL    0/1:3,3:6:67.92:68,0,70
6    46129345    rs2235881    G    A    6208.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1992;MQ=59.87;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=T384;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46128152_46129490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230565    GT:AD:DP:GQ:PL    1/1:0,175:175:99:6209,457,0
6    46135489    rs6926570    T    C    3166.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.8;SNPEFF_AMINO_ACID_CHANGE=I171V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46135171_46136034;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230565    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3200,232,0
6    46135984    rs3806995    G    T    636.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=L6I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46135171_46136034;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230565    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:669,48,0
6    46563817    rs7761731    A    T    759.76    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.213;DB;DP=67;Dels=0.0;FS=5.553;HRun=2;HaplotypeScore=1.6624;MQ=59.31;MQ0=0;MQRankSum=-0.59;QD=11.34;ReadPosRankSum=-2.147;SNPEFF_AMINO_ACID_CHANGE=N324K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46563724_46563857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP39A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275016    GT:AD:DP:GQ:PL    0/1:38,29:67:99:790,0,1112
6    46593321    rs3799869    C    T    164.28    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.079;QD=8.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP39A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275016    GT:AD:DP:GQ:PL    0/1:13,7:20:99:194,0,431
6    46609905    rs2277119    C    T    508.96    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.145;DB;DP=43;Dels=0.0;FS=2.819;HRun=0;HaplotypeScore=1.9557;MQ=60.0;MQ0=0;MQRankSum=0.505;QD=11.84;ReadPosRankSum=-0.037;SNPEFF_AMINO_ACID_CHANGE=R103H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46609900_46610035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP39A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275016    GT:AD:DP:GQ:PL    0/1:25,18:43:99:539,0,769
6    46620252    rs12192544    C    G    8148.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=245;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=59.81;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=R23P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46620143_46620523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP39A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275016    GT:AD:DP:GQ:PL    1/1:0,245:245:99:8149,653,0
6    46623698    rs3757241    T    C    2670.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.15;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=A75;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46623580_46623771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371347    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2704,205,0
6    46626353    rs953062    A    G    87.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355073    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
6    46629857    rs7767605    G    A    87.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355073    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    46632594    rs35884480    T    C    404.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=33;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=1.6828;MQ=58.59;MQ0=0;MQRankSum=-1.246;QD=12.26;ReadPosRankSum=-0.906;SNPEFF_AMINO_ACID_CHANGE=I111T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46632511_46632623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452689    GT:AD:DP:GQ:PL    0/1:15,18:33:99:435,0,460
6    46649231    rs7740677    C    T    3591.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=30.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371347    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3592,274,0
6    46657057    rs3799277    A    G    2284.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.46;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=T398A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46655866_46661911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316081    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2317,172,0
6    46658905    rs9381472    C    G    1736.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=Q1014E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46655866_46661911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316081    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1770,129,0
6    46672205    .    TCTCTCTCTCTCACACA    T    1390.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.156;DP=19;FS=0.0;HRun=0;HaplotypeScore=316.4447;IndelType=D;MQ=47.6;MQ0=0;MQRankSum=-0.385;QD=73.19;ReadPosRankSum=1.542;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316081    GT:AD:DP:GQ:PL    1/1:13,6:19:37.22:1433,37,0
6    46672209    rs144459411    TCTCTCTCACACA    T    1121.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=316.2746;IndelType=D;MQ=48.97;MQ0=0;MQRankSum=-0.274;QD=56.09;ReadPosRankSum=1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316081    GT:AD:DP:GQ:PL    1/1:12,8:20:40.23:1164,40,0
6    46672943    rs1051931    A    G    1954.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=V379A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46672890_46673038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274793    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1987,144,0
6    46676019    rs2216465    C    G    511.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=36.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538237    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:544,39,0
6    46682079    rs1362931    A    C    617.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274793    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:651,54,0
6    46684222    rs1805017    C    T    1454    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=R47H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46684121_46684265;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538237    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1487,114,0
6    46761495    rs2274656    G    A    62.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=12;Dels=0.0;FS=4.771;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.239;QD=5.19;ReadPosRankSum=-1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:8,4:12:92.32:92,0,285
6    46766467    rs872018    G    C    152.04    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.139;QD=6.61;ReadPosRankSum=-1.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:11,12:23:99:182,0,404
6    46766468    rs79205709    G    C    152.04    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.246;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.092;QD=6.61;ReadPosRankSum=-1.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:11,12:23:99:182,0,407
6    46777377    rs1833460    T    C    748.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    1/1:0,23:23:66.18:782,66,0
6    46793175    rs6920863    G    A    194.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.827;QD=8.1;ReadPosRankSum=0.092;SNPEFF_AMINO_ACID_CHANGE=Q241;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46793009_46793230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:16,8:24:99:224,0,551
6    46794048    rs2297018    C    G    503.31    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=37;Dels=0.0;FS=4.613;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;MQRankSum=-0.281;QD=13.6;ReadPosRankSum=-0.911;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:20,17:37:99:533,0,537
6    46797329    rs2274657    G    A    1045.62    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.896;DB;DP=72;Dels=0.0;FS=2.872;HRun=1;HaplotypeScore=2.7717;MQ=59.68;MQ0=0;MQRankSum=0.282;QD=14.52;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:35,37:72:99:1076,0,1214
6    46801071    rs2274658    G    T    885.03    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.235;DB;DP=70;Dels=0.0;FS=0.985;HRun=1;HaplotypeScore=1.6316;MQ=60.0;MQ0=0;MQRankSum=-0.414;QD=12.64;ReadPosRankSum=0.13;SNPEFF_AMINO_ACID_CHANGE=V469L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46800811_46801275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:39,31:70:99:915,0,1334
6    46802370    rs4714952    G    A    1605.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.49;SNPEFF_AMINO_ACID_CHANGE=T555;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46802315_46802488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1639,120,0
6    46803018    rs2297020    A    T    193.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=57.55;MQ0=0;MQRankSum=-1.365;QD=13.82;ReadPosRankSum=-0.225;SNPEFF_AMINO_ACID_CHANGE=T606S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46802986_46803286;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:6,8:14:99:223,0,174
6    46803102    rs2297019    A    G    67.47    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=6.13;ReadPosRankSum=-0.717;SNPEFF_AMINO_ACID_CHANGE=M634V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46802986_46803286;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:6,5:11:97.47:97,0,185
6    46803345    rs12196017    G    A    313.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:347,27,0
6    46806809    rs1804211    C    T    699.09    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.657;DB;DP=40;Dels=0.0;FS=3.166;HRun=0;HaplotypeScore=0.7887;MQ=58.17;MQ0=0;MQRankSum=0.802;QD=17.48;ReadPosRankSum=0.068;SNPEFF_AMINO_ACID_CHANGE=T726M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46806717_46807515;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:18,22:40:99:729,0,427
6    46806939    rs17468190    G    T    52.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=40.99;MQ0=1;MQRankSum=-0.937;QD=6.53;ReadPosRankSum=1.754;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230588    GT:AD:DP:GQ:PL    0/1:4,4:8:82.25:82,0,107
6    46823695    rs657340    G    A    543.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.95;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498632    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:576,42,0
6    46823805    rs75918678    A    AG    885.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=1;HaplotypeScore=47.9197;IndelType=I;MQ=55.72;MQ0=0;QD=36.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498632    GT:AD:DP:GQ:PL    1/1:3,21:24:63.21:928,63,0
6    46824448    rs643409    A    G    743.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.37;MQ0=0;QD=28.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498632    GT:AD:DP:GQ:PL    1/1:0,25:26:66.19:777,66,0
6    46824798    rs521502    C    G    126.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498632    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
6    46826508    rs613870    G    A    1359.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.62;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=N1044;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46825866_46827260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1393,105,0
6    46826715    rs572248    T    A    1609.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=56.73;MQ0=0;QD=34.25;SNPEFF_AMINO_ACID_CHANGE=V346;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46825866_46827260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545557    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1643,126,0
6    46826844    rs571247    T    C    1476.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=T303;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46825866_46827260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545557    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1510,117,0
6    46826910    rs611779    G    A    1742.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=32.88;SNPEFF_AMINO_ACID_CHANGE=A281;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46825866_46827260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545557    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1776,132,0
6    46826979    rs9381487    A    G    720.33    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=2.878;DB;DP=40;Dels=0.0;FS=4.859;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.269;QD=18.01;ReadPosRankSum=0.893;SNPEFF_AMINO_ACID_CHANGE=Y258;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46825866_46827260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545557    GT:AD:DP:GQ:PL    0/1:14,26:40:99:750,0,447
6    46827073    rs547499    A    G    493.72    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.83;MQ0=0;MQRankSum=1.813;QD=15.43;ReadPosRankSum=-1.171;SNPEFF_AMINO_ACID_CHANGE=M227T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46825866_46827260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545557    GT:AD:DP:GQ:PL    0/1:15,17:32:99:524,0,480
6    46827126    rs610856    C    T    922.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.62;MQ0=0;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=S209;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46825866_46827260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545557    GT:AD:DP:GQ:PL    1/1:0,28:28:72.21:956,72,0
6    46827239    rs9395218    C    T    337.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=25;Dels=0.0;FS=3.982;HRun=0;HaplotypeScore=0.0;MQ=50.07;MQ0=0;MQRankSum=-1.014;QD=13.5;ReadPosRankSum=-1.193;SNPEFF_AMINO_ACID_CHANGE=V172I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46825866_46827260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545557    GT:AD:DP:GQ:PL    0/1:10,15:25:99:368,0,264
6    46827335    rs143997423    T    C    175.30    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.26;MQ0=0;MQRankSum=-1.666;QD=19.48;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    0/1:2,7:9:54.81:205,0,55
6    46828670    rs540727    A    G    1045.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1079,78,0
6    46832553    rs530990    A    G    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
6    46832642    rs615677    A    C    321.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
6    46832741    rs529201    T    C    1180.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1214,93,0
6    46832813    rs614826    G    A    982.69    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=76;Dels=0.0;FS=0.874;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.912;QD=12.93;ReadPosRankSum=1.226;SNPEFF_AMINO_ACID_CHANGE=V510;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46832779_46832934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456426    GT:AD:DP:GQ:PL    0/1:39,37:76:99:1013,0,1177
6    46834441    rs1410823    A    T    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
6    46834473    rs586986    T    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    46834685    rs586024    G    A    1544.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_AMINO_ACID_CHANGE=T33M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46834662_46834874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545669    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1577,114,0
6    46834906    rs11347282    TG    T    425.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=29.2364;IndelType=D;MQ=60.9;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:468,36,0
6    46847501    rs2273265    T    G    190.17    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=0.845;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.262;QD=7.61;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    0/1:17,8:25:99:220,0,591
6    46849057    rs11760108    G    T    67.48    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.64;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    0/1:4,3:7:97.47:97,0,135
6    46856100    rs678312    G    A    2190.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=T100;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_46856072_46856242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2224,160,0
6    46856263    rs677439    G    A    378.40    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=30;Dels=0.0;FS=3.798;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.686;QD=12.61;ReadPosRankSum=0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    0/1:16,14:30:99:408,0,497
6    46867717    rs220702    C    T    1143.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1177,87,0
6    46867898    rs3215601    TA    T    101.89    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=16;FS=0.0;HRun=3;HaplotypeScore=35.5536;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=-0.674;QD=6.37;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265417    GT:AD:DP:GQ:PL    0/1:11,5:16:99:141,0,387
6    46980115    rs1226479    G    A    174.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471487    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
6    47547070    rs34735056    T    TA    216.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=21;FS=0.0;HRun=14;HaplotypeScore=173.6279;IndelType=I;MQ=49.79;MQ0=0;MQRankSum=0.938;QD=10.32;ReadPosRankSum=0.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD2AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359314    GT:AD:DP:GQ:PL    0/1:7,9:21:9.75:256,0,10
6    47563692    rs2039503    C    T    9133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=59.82;MQ0=0;QD=36.54;SNPEFF_AMINO_ACID_CHANGE=L402;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_47563597_47563762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD2AP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359314    GT:AD:DP:GQ:PL    1/1:0,250:250:99:9134,668,0
6    47649265    rs17541107    T    A    3744.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_AMINO_ACID_CHANGE=L256M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_47649001_47650362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR111;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398742    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3745,280,0
6    47686101    rs6914013    T    C    1573.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.62;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR115;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283303    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1607,120,0
6    47749728    rs7741473    T    G    465.07    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.872;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.285;QD=16.04;ReadPosRankSum=1.162;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371211    GT:AD:DP:GQ:PL    0/1:13,16:29:99:495,0,358
6    47754498    rs1329543    A    G    74.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=56.04;MQ0=0;MQRankSum=-0.406;QD=12.41;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371211    GT:AD:DP:GQ:PL    0/1:3,3:6:93.27:104,0,93
6    47754538    rs6900985    T    C    71.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=8.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371211    GT:AD:DP:GQ:PL    0/1:4,4:8:98.37:101,0,98
6    47775592    rs17552756    A    G    45.67    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.42;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371211    GT:AD:DP:GQ:PL    0/1:1,3:4:29.75:76,0,30
6    47845813    rs1887899    G    T    298.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339488    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
6    47847179    rs74553560    A    G    4227.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8737;MQ=59.68;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=V467;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_47845764_47847672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf138;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339488    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4228,325,0
6    47847401    rs2068006    A    G    2838.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=A393;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_47845764_47847672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf138;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339488    GT:AD:DP:GQ:PL    1/1:0,82:84:99:2872,229,0
6    47847683    rs9367307    A    T    1113.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=22.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339488    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1146,105,0
6    47976361    rs61745530    G    T    369.61    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.048;DB;DP=52;Dels=0.0;FS=6.854;HRun=0;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=-0.987;QD=7.11;ReadPosRankSum=0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339488    GT:AD:DP:GQ:PL    0/1:37,15:52:99:400,0,1057
6    47977018    rs2753194    C    A    177.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=12.65;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339488    GT:AD:DP:GQ:PL    0/1:7,7:14:99:207,0,247
6    49403282    rs8589    T    C    562.48    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.302;DB;DP=33;Dels=0.0;FS=8.93;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.614;QD=17.04;ReadPosRankSum=-1.036;SNPEFF_AMINO_ACID_CHANGE=I118V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_49403169_49403336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540138    GT:AD:DP:GQ:PL    0/1:13,20:33:99:592,0,368
6    49407951    .    C    G    1375.01    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5257;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=13.75;ReadPosRankSum=0.39;SNPEFF_AMINO_ACID_CHANGE=G642R;SNPEFF_CODON_CHANGE=Ggt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_49407919_49408066;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274813    GT:AD:DP:GQ:PL    0/1:48,52:100:99:1405,0,1446
6    49412275    rs9381786    T    G    2082.38    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.277;DB;DP=133;Dels=0.0;FS=1.42;HRun=0;HaplotypeScore=2.8648;MQ=59.65;MQ0=0;MQRankSum=0.399;QD=15.66;ReadPosRankSum=-0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274813    GT:AD:DP:GQ:PL    0/1:64,69:133:99:2112,0,2018
6    49421579    rs9369901    G    A    137.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.309;QD=11.42;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274813    GT:AD:DP:GQ:PL    0/1:7,5:12:99:167,0,254
6    49425521    rs2229384    C    T    593.73    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DB;DP=49;Dels=0.0;FS=1.116;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.259;QD=12.12;ReadPosRankSum=-0.217;SNPEFF_AMINO_ACID_CHANGE=K212;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_49425404_49425771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000274813    GT:AD:DP:GQ:PL    0/1:26,23:49:99:624,0,858
6    49437853    rs11333073    A    AT    58.58    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=19;FS=2.963;HRun=13;HaplotypeScore=50.4002;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=3.08;ReadPosRankSum=0.267;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPQ;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000371200    GT:AD:DP:GQ:PL    0/1:13,6:19:97.61:98,0,143
6    49459791    rs12175251    A    G    317.98    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.425;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=12.72;ReadPosRankSum=0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335783    GT:AD:DP:GQ:PL    0/1:14,11:25:99:348,0,467
6    49459978    rs2501968    A    G    541.13    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=29;Dels=0.0;FS=7.181;HRun=2;HaplotypeScore=0.9947;MQ=59.2;MQ0=0;MQRankSum=-0.282;QD=18.66;ReadPosRankSum=1.693;SNPEFF_AMINO_ACID_CHANGE=D266G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_49459857_49460820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335783    GT:AD:DP:GQ:PL    0/1:12,17:29:99:571,0,368
6    49460152    rs1471539    A    G    37.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.52;ReadPosRankSum=0.736;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335783    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:68,0,32
6    49494241    rs9367359    A    G    2612.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.65;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=N161D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_49494201_49494760;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYATL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371197    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2646,208,0
6    49518914    rs6919674    C    G    129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=56.04;MQ0=0;QD=21.66;SNPEFF_AMINO_ACID_CHANGE=Q137E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_49518113_49519808;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529246    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:162,12,0
6    49701439    rs1864312    C    A    823.32    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.813;QD=11.93;ReadPosRankSum=-0.448;SNPEFF_AMINO_ACID_CHANGE=A134S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_49701416_49701561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393666    GT:AD:DP:GQ:PL    0/1:38,31:69:99:853,0,1115
6    49701523    rs495335    A    G    2289.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.33;MQ0=0;QD=30.12;SNPEFF_AMINO_ACID_CHANGE=S106P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_49701416_49701561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393666    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2322,178,0
6    49703027    rs3823210    G    T    37.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263045    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:67,0,33
6    49705182    rs2275597    G    A    292.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.852;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.189;QD=14.65;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263045    GT:AD:DP:GQ:PL    0/1:10,10:20:99:323,0,358
6    49805985    rs12200099    T    C    131.17    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=11.92;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329411    GT:AD:DP:GQ:PL    0/1:6,5:11:99:161,0,198
6    49913981    rs7760672    C    T    662.90    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.274;DB;DP=60;Dels=0.0;FS=1.118;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=11.05;ReadPosRankSum=-0.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398721    GT:AD:DP:GQ:PL    0/1:34,26:60:99:693,0,1078
6    49917264    rs9369926    A    C    144.37    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=11.11;ReadPosRankSum=-1.093;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398721    GT:AD:DP:GQ:PL    0/1:7,6:13:99:174,0,250
6    49937257    rs72864842    C    A    1020.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.231;DB;DP=65;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.217;QD=15.7;ReadPosRankSum=1.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398718    GT:AD:DP:GQ:PL    0/1:30,35:65:99:1050,0,932
6    49989657    rs10948540    G    A    600.70    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=32;Dels=0.0;FS=4.266;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.806;QD=18.77;ReadPosRankSum=-1.343;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393660    GT:AD:DP:GQ:PL    0/1:13,19:32:99:631,0,443
6    50683009    rs78648104    T    C    833.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=70;Dels=0.0;FS=1.983;HRun=2;HaplotypeScore=1.6006;MQ=59.67;MQ0=0;MQRankSum=-0.018;QD=11.9;ReadPosRankSum=-0.878;SNPEFF_AMINO_ACID_CHANGE=F74L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_50682829_50683326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFAP2D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000008391    GT:AD:DP:GQ:PL    0/1:40,30:70:99:863,0,1130
6    50786571    rs2272903    G    A    528.34    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.35;DB;DP=35;Dels=0.0;FS=2.2;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.941;QD=15.1;ReadPosRankSum=0.611;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFAP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489228    GT:AD:DP:GQ:PL    0/1:17,18:35:99:558,0,560
6    50796634    rs760900    A    G    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFAP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344788    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    50805942    rs2817404    T    G    383.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFAP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263046    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:416,30,0
6    50824804    rs2817423    T    A    315.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS17P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498293    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:349,27,0
6    51483961    rs9381994    T    C    1026.78    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.073;DB;DP=70;Dels=0.0;FS=2.292;HRun=0;HaplotypeScore=0.9159;MQ=59.67;MQ0=0;MQRankSum=2.379;QD=14.67;ReadPosRankSum=1.407;SNPEFF_AMINO_ACID_CHANGE=Q4048R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_51480098_51484318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371117    GT:AD:DP:GQ:PL    0/1:27,42:70:99:1057,0,768
6    51491884    rs4715227    T    C    908.12    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.629;DB;DP=74;Dels=0.0;FS=6.359;HRun=1;HaplotypeScore=0.5784;MQ=59.38;MQ0=0;MQRankSum=-0.92;QD=12.27;ReadPosRankSum=-1.676;SNPEFF_AMINO_ACID_CHANGE=Q3899R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_51491795_51491914;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371117    GT:AD:DP:GQ:PL    0/1:43,31:74:99:938,0,1364
6    51492046    rs9474033    T    G    130.59    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.699;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.55;MQ0=0;MQRankSum=-0.113;QD=8.16;ReadPosRankSum=0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371117    GT:AD:DP:GQ:PL    0/1:11,5:16:99:161,0,410
6    51503597    .    C    CA    730.76    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=2.039;DP=172;FS=13.37;HRun=18;HaplotypeScore=1434.8637;IndelType=I;MQ=46.14;MQ0=1;MQRankSum=-2.354;QD=4.2;ReadPosRankSum=-2.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371117    GT:AD:DP:GQ:PL    0/1:119,32:172:99:770,0,107
6    51512707    rs2580009    T    C    143.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=15.89;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371117    GT:AD:DP:GQ:PL    0/1:3,6:9:92.07:173,0,92
6    51586771    rs9349593    G    A    346.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=35;Dels=0.0;FS=23.024;HRun=0;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=0.992;QD=9.91;ReadPosRankSum=0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371117    GT:AD:DP:GQ:PL    0/1:14,21:35:99:377,0,396
6    51586772    rs45451196    C    T    344.88    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=36;Dels=0.0;FS=16.324;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.421;QD=9.58;ReadPosRankSum=0.724;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371117    GT:AD:DP:GQ:PL    0/1:15,21:36:99:375,0,446
6    51611470    rs2397060    T    C    430.98    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.593;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.375;QD=14.37;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    0/1:16,14:30:99:461,0,463
6    51617800    rs1326607    A    G    97.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:130,12,0
6    51618170    rs1326605    T    G    591.15    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=49;Dels=0.0;FS=14.927;HRun=3;HaplotypeScore=1.6918;MQ=59.53;MQ0=0;MQRankSum=-0.071;QD=12.06;ReadPosRankSum=1.719;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    0/1:29,20:49:99:621,0,954
6    51656236    rs7765455    G    T    261.67    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=11.38;ReadPosRankSum=-0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    0/1:10,13:23:99:292,0,352
6    51656388    rs4715233    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    51695570    rs1571083    T    A    770.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:803,60,0
6    51695647    rs1571084    A    T    1543.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1576,117,0
6    51701058    rs9474104    C    T    216.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:250,21,0
6    51732807    rs12210295    C    T    1810.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=35.51;SNPEFF_AMINO_ACID_CHANGE=G2529;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_51732661_51732907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1844,138,0
6    51875250    rs2435322    A    C    1756.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=L1870V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_51875107_51875257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1790,132,0
6    51882075    rs9349614    C    G    169.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:203,18,0
6    51887419    rs2195590    T    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    51890823    rs9296669    G    A    1334.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_AMINO_ACID_CHANGE=A1262V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_51889372_51890979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1367,108,0
6    51890852    rs9689306    C    G    557.02    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.606;DB;DP=42;Dels=0.0;FS=2.977;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-1.011;QD=13.26;ReadPosRankSum=0.025;SNPEFF_AMINO_ACID_CHANGE=L1252;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_51889372_51890979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    0/1:23,19:42:99:587,0,731
6    51891011    rs2499480    T    C    754.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=59.03;MQ0=0;QD=31.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,24:24:57.19:788,57,0
6    51898144    rs36119731    C    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    51898155    rs35175045    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    51913240    rs10948667    G    A    2230.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2264,169,0
6    51914898    rs9395759    T    C    249.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:283,21,0
6    51914956    rs9370096    G    A    1162.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=R760C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_51914955_51915093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1196,87,0
6    51924774    rs1896976    A    G    4255.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=59.84;MQ0=0;QD=36.37;SNPEFF_AMINO_ACID_CHANGE=D395;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_51924726_51924840;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,117:117:99:4255,307,0
6    51930886    rs5876252    T    TA    191.05    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=28;FS=0.0;HRun=14;HaplotypeScore=161.9427;IndelType=I;MQ=54.85;MQ0=0;MQRankSum=-1.086;QD=6.82;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    0/1:14,14:28:1.66:229,0,2
6    51935061    rs4711996    T    G    167.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
6    51935747    rs17576809    C    T    1003.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1036,75,0
6    51936846    rs3936986    T    C    425.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=25.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,17:17:36.10:459,36,0
6    51944847    rs1892274    T    C    1117.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,36:36:96.27:1150,96,0
6    51946893    rs6458806    T    C    93.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
6    51949862    rs9370097    A    G    750.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340994    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:783,57,0
6    52101758    rs11465553    C    T    539.73    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.805;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.878;QD=14.99;ReadPosRankSum=-0.348;SNPEFF_AMINO_ACID_CHANGE=V155I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_52101479_52101966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336123    GT:AD:DP:GQ:PL    0/1:17,19:36:99:570,0,527
6    52319251    rs614570    C    T    37.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.47;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371068    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,86
6    52355206    rs2273120    T    C    417.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371068    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:450,36,0
6    52357260    rs7757370    C    A    158.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182527    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:191,15,0
6    52370939    rs9688915    G    A    434.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.381;QD=12.07;ReadPosRankSum=1.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433625    GT:AD:DP:GQ:PL    0/1:20,16:36:99:465,0,576
6    52374319    rs57120044    T    TAC    511.78    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.16;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=102.4425;IndelType=I;MQ=60.33;MQ0=0;MQRankSum=-0.019;QD=15.51;ReadPosRankSum=1.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433625    GT:AD:DP:GQ:PL    0/1:21,11:33:99:551,0,778
6    52380641    rs941968    C    T    212.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=17.73;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433625    GT:AD:DP:GQ:PL    0/1:4,8:12:99:243,0,131
6    52400484    rs3215574    GA    G    46.84    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=13;FS=0.0;HRun=12;HaplotypeScore=48.7247;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=1.453;QD=3.6;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182527    GT:AD:DP:GQ:PL    0/1:8,5:13:85.87:86,0,122
6    52400529    rs2073179    G    A    293.43    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.391;DB;DP=27;Dels=0.0;FS=8.57;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=1.683;QD=10.87;ReadPosRankSum=-0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182527    GT:AD:DP:GQ:PL    0/1:15,12:27:99:323,0,522
6    52541811    rs13211066    G    A    904.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211314    GT:AD:DP:GQ:PL    1/1:0,24:24:72.21:938,72,0
6    52617731    rs2180314    C    G    5305.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9815;MQ=59.61;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=S112T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_52617652_52617793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000493422    GT:AD:DP:GQ:PL    1/1:0,155:155:99:5306,388,0
6    52620013    rs34744156    C    CT    87.62    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=20;FS=0.0;HRun=17;HaplotypeScore=172.0587;IndelType=I;MQ=50.41;MQ0=0;MQRankSum=-0.48;QD=4.38;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493422    GT:AD:DP:GQ:PL    0/1:12,6:20:3.05:126,0,3
6    52622475    rs2608624    G    T    290.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493422    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
6    52622814    rs2254050    C    T    822.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493422    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:855,63,0
6    52657552    rs4715326    C    T    831.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476213    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:864,66,0
6    52659097    rs72552261    C    T    740.83    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5767;MQ=56.7;MQ0=0;MQRankSum=-1.641;QD=12.14;ReadPosRankSum=-0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334575    GT:AD:DP:GQ:PL    0/1:35,26:61:99:771,0,1181
6    52660828    rs2894803    C    A    765.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334575    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:799,60,0
6    52660867    rs2290757    C    T    1690.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.77;MQ0=0;QD=36.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334575    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1724,129,0
6    52662263    rs2397106    C    T    329.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=38.11;MQ0=0;QD=29.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334575    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:362,30,0
6    52663705    rs9349644    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334575    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    52663866    rs9395823    A    C    879.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334575    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:912,69,0
6    52697576    rs4715344    C    T    1244.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1278,96,0
6    52697825    rs4715345    A    C    2233.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2267,172,0
6    52697834    rs4715346    C    A    2297.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.58;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2331,172,0
6    52697890    rs4715347    C    T    1290.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,37:37:96.32:1324,96,0
6    52698035    rs4715348    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.61;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
6    52698788    rs4712021    T    C    637.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:670,51,0
6    52698798    rs4715349    G    T    762.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=38.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:796,60,0
6    52700920    rs2397117    T    C    1332.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1365,105,0
6    52701143    rs2397118    C    T    2932.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_AMINO_ACID_CHANGE=V55I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_52701034_52701166;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2965,223,0
6    52702324    rs4715350    T    C    1085.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:1,30:32:84.27:1118,84,0
6    52702529    rs4715351    T    C    165.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284562    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
6    52843131    rs367836    G    T    276.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.826;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=15.34;ReadPosRankSum=-0.706;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370959    GT:AD:DP:GQ:PL    0/1:9,9:18:99:306,0,280
6    52843477    rs375887    A    G    71.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.99;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457564    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,107
6    52843524    rs543613    T    C    167.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457564    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
6    52847273    rs34178374    T    TAC    574.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=38.2831;IndelType=I;MQ=60.77;MQ0=0;QD=41.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457564    GT:AD:DP:GQ:PL    1/1:3,11:14:39.13:617,39,0
6    52847551    rs316133    G    C    39.77    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.224;DB;DP=21;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.582;QD=1.89;ReadPosRankSum=-1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370959    GT:AD:DP:GQ:PL    0/1:17,4:21:69.76:70,0,576
6    52849146    rs316128    G    T    170.18    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=15.47;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370959    GT:AD:DP:GQ:PL    0/1:5,6:11:99:200,0,155
6    52850040    rs669674    A    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370959    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    52850155    rs2274760    G    C    255.91    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=15.05;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370959    GT:AD:DP:GQ:PL    0/1:8,9:17:99:286,0,237
6    52851921    rs45483696    C    T    112.20    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.379;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.039;QD=7.01;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370959    GT:AD:DP:GQ:PL    0/1:11,5:16:99:142,0,397
6    52851936    rs508078    T    C    822.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370959    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:855,63,0
6    52851979    rs3756980    A    G    687.97    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.124;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.264;QD=13.76;ReadPosRankSum=-1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370959    GT:AD:DP:GQ:PL    0/1:28,22:50:99:718,0,971
6    52938468    rs35618376    AT    A    119.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=21;FS=0.0;HRun=13;HaplotypeScore=87.9177;IndelType=D;MQ=58.83;MQ0=0;MQRankSum=-0.791;QD=5.67;ReadPosRankSum=-1.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459845    GT:AD:DP:GQ:PL    1/1:11,9:21:1.66:157,2,0
6    52958479    rs2816350    A    G    438.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480463    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:471,36,0
6    52962715    rs2744455    C    T    353.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=23.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370939    GT:AD:DP:GQ:PL    1/1:0,15:15:30.09:386,30,0
6    52998834    rs2816345    C    T    227.60    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=25.29;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259803    GT:AD:DP:GQ:PL    0/1:2,7:9:20.69:258,0,21
6    52998856    rs2518573    T    G    413.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.267;DB;DP=17;Dels=0.0;FS=9.294;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.565;QD=24.33;ReadPosRankSum=-0.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259803    GT:AD:DP:GQ:PL    1/1:2,15:17:0.36:442,0,0
6    53134104    rs3830806    C    CACAG    602.93    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.595;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=83.7702;IndelType=I;MQ=51.33;MQ0=0;MQRankSum=-3.039;QD=30.15;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304434    GT:AD:DP:GQ:PL    0/1:13,7:20:99:642,0,556
6    53138203    rs35189966    TA    T    71.18    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=1.047;DB;DP=32;FS=4.437;HRun=14;HaplotypeScore=170.6949;IndelType=D;MQ=55.89;MQ0=0;MQRankSum=0.821;QD=2.22;ReadPosRankSum=1.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465983    GT:AD:DP:GQ:PL    0/1:22,9:32:99:110,0,358
6    53138260    rs9463895    G    A    98.57    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.278;QD=8.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465983    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,213
6    53140928    rs2294864    T    A    113.89    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=18;Dels=0.0;FS=3.522;HRun=5;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=6.33;ReadPosRankSum=-1.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465983    GT:AD:DP:GQ:PL    0/1:10,8:18:99:144,0,358
6    53160383    rs3736732    G    T    136.31    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=9.74;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304434    GT:AD:DP:GQ:PL    0/1:8,6:14:99:166,0,295
6    53363487    rs17880189    GGGCT    G    483.60    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=2.964;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=129.2395;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=-0.988;QD=17.27;ReadPosRankSum=1.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504353    GT:AD:DP:GQ:PL    0/1:17,11:28:99:523,0,1262
6    53365019    rs661346    G    C    1985.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=29.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229416    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2018,171,0
6    53365374    rs2066511    C    T    964.27    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.789;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.234;QD=18.54;ReadPosRankSum=-0.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229416    GT:AD:DP:GQ:PL    0/1:22,30:52:99:994,0,637
6    53370107    rs661603    T    C    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504525    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,106
6    53370395    rs524553    C    T    72.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.57;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504525    GT:AD:DP:GQ:PL    0/1:2,3:5:64.91:103,0,65
6    53373624    rs3830795    G    GCTCCAC    797.17    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=71.3702;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=-3.165;QD=49.82;ReadPosRankSum=1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514004    GT:AD:DP:GQ:PL    0/1:9,7:16:99:836,0,398
6    53379405    rs3736729    A    C    223.05    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=17.16;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229416    GT:AD:DP:GQ:PL    0/1:6,7:13:99:253,0,206
6    53385475    rs2100375    C    T    361.98    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.81;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.136;QD=11.31;ReadPosRankSum=-0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505197    GT:AD:DP:GQ:PL    0/1:20,12:32:99:392,0,737
6    53409451    .    C    CCCT    447.01    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=65.9262;IndelType=I;MQ=51.25;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505197    GT:AD:DP:GQ:PL    1/1:8,7:17:27.09:489,27,0
6    53516876    rs6928338    T    G    455.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.46;SNPEFF_AMINO_ACID_CHANGE=I475;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_53512699_53517128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:488,42,0
6    53517228    rs41273882    A    C    158.98    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.377;QD=12.23;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:7,6:13:99:189,0,241
6    53519062    rs10948758    A    G    856.02    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.887;DB;DP=57;Dels=0.0;FS=9.416;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=15.02;ReadPosRankSum=-0.455;SNPEFF_AMINO_ACID_CHANGE=L337;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_53518899_53520103;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:28,29:57:99:886,0,968
6    53519605    rs3799260    C    T    768.57    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=13.48;ReadPosRankSum=0.617;SNPEFF_AMINO_ACID_CHANGE=V156I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_53518899_53520103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:31,26:57:99:799,0,1023
6    53519857    rs12210809    G    A    588.06    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=50;Dels=0.0;FS=2.512;HRun=1;HaplotypeScore=1.4972;MQ=59.54;MQ0=0;MQRankSum=-0.503;QD=11.76;ReadPosRankSum=0.417;SNPEFF_AMINO_ACID_CHANGE=L72;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_53518899_53520103;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:27,22:50:99:618,0,834
6    53520088    rs2038939    T    C    763.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;QD=33.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407079    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:797,63,0
6    53520124    rs77879927    A    G    177.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=14.82;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:4,8:12:99:208,0,117
6    53529014    rs77771017    C    T    532.74    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.307;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=16.14;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:15,18:33:99:563,0,467
6    53529027    rs1326554    A    T    467.64    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.931;QD=12.99;ReadPosRankSum=1.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:21,15:36:99:498,0,693
6    53529138    rs76135039    C    T    672.35    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.183;DB;DP=53;Dels=0.0;FS=1.154;HRun=1;HaplotypeScore=1.9075;MQ=59.21;MQ0=0;MQRankSum=1.3;QD=12.69;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:25,27:53:99:702,0,861
6    53529219    rs74447887    A    G    268.66    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.84;MQ0=0;MQRankSum=-0.122;QD=13.43;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:9,10:20:99:299,0,296
6    53529252    rs17216271    C    T    197.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.13;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370905    GT:AD:DP:GQ:PL    0/1:7,7:14:99:228,0,190
6    53707098    rs4286781    C    T    917.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370882    GT:AD:DP:GQ:PL    1/1:0,27:27:72.22:950,72,0
6    53762210    rs62397108    C    A    306.27    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.619;DB;DP=19;Dels=0.0;FS=3.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=16.12;ReadPosRankSum=0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370888    GT:AD:DP:GQ:PL    0/1:8,11:19:99:336,0,274
6    53784662    rs3777661    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370888    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    53785276    rs2294789    C    A    33.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=11.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370888    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:64,0,32
6    53787267    rs2294791    G    C    111.32    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.37;ReadPosRankSum=2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LRRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474641    GT:AD:DP:GQ:PL    0/1:5,4:9:99:141,0,159
6    53883843    rs17625497    G    A    546.42    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=3.362;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.07;QD=12.42;ReadPosRankSum=0.516;SNPEFF_AMINO_ACID_CHANGE=R6H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_53883714_53883889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000274897    GT:AD:DP:GQ:PL    0/1:22,21:44:99:576,0,568
6    53989526    rs4712056    G    A    943.13    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.268;DB;DP=65;Dels=0.0;FS=2.137;HRun=0;HaplotypeScore=1.996;MQ=59.65;MQ0=0;MQRankSum=-1.052;QD=14.51;ReadPosRankSum=1.272;SNPEFF_AMINO_ACID_CHANGE=V107I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_53989271_53989663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370877    GT:AD:DP:GQ:PL    0/1:32,33:65:99:973,0,921
6    54013635    rs2797427    C    T    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274897    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:72,0,28
6    54013765    rs2145755    A    G    102.54    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=9.32;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274897    GT:AD:DP:GQ:PL    0/1:7,4:11:99:133,0,255
6    54034547    rs816388    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274897    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    54054686    rs6934690    T    A    2009.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=S154T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_54054668_54054712;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370878    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2043,150,0
6    54054837    rs9296739    A    G    70.09    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.76;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274897    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,179
6    54095423    rs816384    T    C    3217.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=59.26;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274897    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3251,253,0
6    54173085    rs2297981    T    A    284.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TINAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370869    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
6    54186024    rs2297986    T    C    683.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TINAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259782    GT:AD:DP:GQ:PL    1/1:0,19:20:54.17:716,54,0
6    54186147    rs1058768    T    C    1206.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=S140P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_54186095_54186184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TINAG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370864    GT:AD:DP:GQ:PL    1/1:0,39:39:93.30:1239,93,0
6    54191363    rs9370289    G    A    47.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TINAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259782    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    54191970    rs1848440    T    A    1710    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=35.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TINAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370864    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1743,132,0
6    54734941    rs7765721    C    A    329.85    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.867;QD=17.36;ReadPosRankSum=-0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306858    GT:AD:DP:GQ:PL    0/1:8,11:19:99:360,0,277
6    54735122    rs1472679    A    G    997.87    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.414;DB;DP=70;Dels=0.0;FS=21.023;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.243;QD=14.26;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=E26;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_54734985_54735488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306858    GT:AD:DP:GQ:PL    0/1:37,33:70:99:1028,0,1280
6    54735606    rs995852    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306858    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
6    54792181    rs147505952    GT    G    90.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;FS=0.0;HRun=10;HaplotypeScore=43.0663;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=-1.203;QD=10.03;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306858    GT:AD:DP:GQ:PL    0/1:3,6:9:72.53:129,0,73
6    54792236    rs2746440    A    G    530.15    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=29;Dels=0.0;FS=4.058;HRun=0;HaplotypeScore=0.9159;MQ=59.58;MQ0=0;MQRankSum=-0.562;QD=18.28;ReadPosRankSum=-0.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306858    GT:AD:DP:GQ:PL    0/1:11,18:29:99:560,0,316
6    54792524    .    AGT    A    229.39    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DP=27;FS=0.0;HRun=0;HaplotypeScore=246.2046;IndelType=D;MQ=39.45;MQ0=0;MQRankSum=-3.06;QD=8.5;ReadPosRankSum=2.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306858    GT:AD:DP:GQ:PL    0/1:14,8:27:99:268,0,300
6    54805688    rs239798    A    C    905.36    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.918;DB;DP=70;Dels=0.0;FS=10.267;HRun=0;HaplotypeScore=1.7326;MQ=59.67;MQ0=0;MQRankSum=-0.294;QD=12.93;ReadPosRankSum=0.953;SNPEFF_AMINO_ACID_CHANGE=K640T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_54804504_54806820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306858    GT:AD:DP:GQ:PL    0/1:37,33:70:99:935,0,1295
6    54806489    rs9475077    C    A    525.46    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.655;DB;DP=45;Dels=0.0;FS=4.124;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.352;QD=11.68;ReadPosRankSum=-0.658;SNPEFF_AMINO_ACID_CHANGE=T907N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_54804504_54806820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306858    GT:AD:DP:GQ:PL    0/1:24,21:45:99:555,0,787
6    55113411    rs3122169    C    A    2124.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCRTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370862    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2158,160,0
6    55142337    rs2653349    A    G    1640.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=34.9;SNPEFF_AMINO_ACID_CHANGE=I308V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_55142178_55142398;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCRTR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370862    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1673,126,0
6    55196299    rs4715531    C    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    55196587    rs12199003    C    T    588.43    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.36;DB;DP=43;Dels=0.0;FS=2.751;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.208;QD=13.68;ReadPosRankSum=0.404;SNPEFF_AMINO_ACID_CHANGE=R33C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_55196513_55196647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    0/1:24,19:43:99:618,0,652
6    55215079    rs1032767    G    A    252.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
6    55215868    rs9396082    A    G    70.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
6    55216005    rs870806    G    A    656.33    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.703;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.029;QD=19.89;ReadPosRankSum=0.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    0/1:12,21:33:99:686,0,348
6    55223962    .    G    GTCTA    347.19    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.388;DP=33;FS=0.0;HRun=0;HaplotypeScore=132.3032;IndelType=I;MQ=60.65;MQ0=0;MQRankSum=1.171;QD=10.52;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    0/1:27,6:33:99:386,0,504
6    55264362    rs6936510    T    C    171.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
6    55264461    rs6913781    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    55266625    rs9370418    T    C    2074.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=S387P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_55266588_55267291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2108,153,0
6    55266722    rs12529201    C    T    706.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.27;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    1/1:0,25:25:57.17:740,57,0
6    55266796    rs10948913    C    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340465    GT:AD:DP:GQ:PL    0/1:2,2:4:60.89:71,0,61
6    55360086    rs4538708    A    G    337.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274901    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
6    55381262    rs6459082    G    A    1515.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=36.96;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515546    GT:AD:DP:GQ:PL    1/1:1,40:41:92.69:1549,93,0
6    55381574    rs9464253    T    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274901    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
6    55381594    rs9464254    T    C    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274901    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    55406399    rs9367638    C    T    103.58    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=9.42;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274901    GT:AD:DP:GQ:PL    0/1:5,6:11:99:134,0,181
6    55406670    rs12196868    A    G    502.19    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=29;Dels=0.0;FS=3.163;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.022;QD=17.32;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGCLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274901    GT:AD:DP:GQ:PL    0/1:14,15:29:99:532,0,468
6    55625436    rs41271328    T    A    143.78    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=15.98;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370830    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,141
6    55638712    rs1348892    G    A    88.24    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.02;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370830    GT:AD:DP:GQ:PL    0/1:7,4:11:99:118,0,234
6    55659301    rs151194644    A    G    473.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.642;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=-0.62;QD=16.91;ReadPosRankSum=2.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370830    GT:AD:DP:GQ:PL    0/1:14,14:28:99:503,0,489
6    55730212    rs2021803    G    A    179.32    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.992;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.181;QD=9.96;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370830    GT:AD:DP:GQ:PL    0/1:11,7:18:99:209,0,320
6    55739553    rs3734444    A    G    2557.05    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=193;Dels=0.0;FS=3.904;HRun=0;HaplotypeScore=1.8273;MQ=59.16;MQ0=0;MQRankSum=0.687;QD=13.25;ReadPosRankSum=-0.585;SNPEFF_AMINO_ACID_CHANGE=S37;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_55739174_55740362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370830    GT:AD:DP:GQ:PL    0/1:102,91:193:99:2587,0,3284
6    55929347    rs2235735    T    C    784.67    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.854;DB;DP=71;Dels=0.0;FS=2.663;HRun=0;HaplotypeScore=1.8273;MQ=59.74;MQ0=0;MQRankSum=0.833;QD=11.05;ReadPosRankSum=-0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL21A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461489    GT:AD:DP:GQ:PL    0/1:40,29:71:99:815,0,1385
6    55938839    rs4715576    G    A    39.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL21A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484987    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:69,0,30
6    55942538    rs969513    G    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL21A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244728    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    55966418    rs4379279    A    G    100.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=10.05;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL21A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244728    GT:AD:DP:GQ:PL    0/1:4,6:10:99:130,0,144
6    56044578    rs2038149    T    C    3120.09    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.249;DB;DP=183;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.0512;MQ=59.27;MQ0=0;MQRankSum=2.413;QD=17.05;ReadPosRankSum=0.211;SNPEFF_AMINO_ACID_CHANGE=K146;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56044376_56044927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL21A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244728    GT:AD:DP:GQ:PL    0/1:77,105:183:99:3150,0,2381
6    56044835    .    C    A    33.34    HaplotypeScoreFilter13;QDFilter2    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.59;DP=136;Dels=0.0;FS=58.637;HRun=2;HaplotypeScore=15.0869;MQ=57.05;MQ0=0;MQRankSum=0.01;QD=0.25;ReadPosRankSum=1.543;SNPEFF_AMINO_ACID_CHANGE=V61F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56044376_56044927;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL21A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244728    GT:AD:DP:GQ:PL    0/1:91,45:136:63.33:63,0,2021
6    56045043    rs2038150    C    A    337.09    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.93;QD=24.08;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL21A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244728    GT:AD:DP:GQ:PL    0/1:4,10:14:83.85:367,0,84
6    56324179    rs9370531    A    G    52.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524216    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    56327849    rs11758339    C    T    1270.16    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.405;DB;DP=110;Dels=0.0;FS=1.548;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-0.266;QD=11.55;ReadPosRankSum=-0.06;SNPEFF_AMINO_ACID_CHANGE=A5042T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56327844_56327954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:63,47:110:99:1300,0,1855
6    56334594    rs9349823    A    T    829.66    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.594;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.631;QD=17.65;ReadPosRankSum=-1.145;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492944    GT:AD:DP:GQ:PL    0/1:21,26:47:99:860,0,691
6    56337132    rs34164953    CG    C    197.70    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=3.507;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=43.1694;IndelType=D;MQ=60.57;MQ0=0;MQRankSum=-0.634;QD=10.41;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517840    GT:AD:DP:GQ:PL    0/1:12,7:19:99:237,0,519
6    56338564    rs2273972    G    T    140.50    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.466;QD=11.71;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517840    GT:AD:DP:GQ:PL    0/1:6,5:12:99:170,0,216
6    56340803    rs6928601    G    A    120.83    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.17;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517840    GT:AD:DP:GQ:PL    0/1:1,4:5:24.26:151,0,24
6    56350339    rs2273974    T    A    250.61    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.684;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.784;QD=13.19;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:8,11:19:99:281,0,287
6    56359034    rs11759493    C    A    1352.83    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.121;DB;DP=92;Dels=0.0;FS=1.186;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.45;QD=14.7;ReadPosRankSum=0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:44,48:92:99:1383,0,1366
6    56365814    rs4283892    A    G    980.75    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.978;DB;DP=88;Dels=0.0;FS=4.778;HRun=0;HaplotypeScore=0.8667;MQ=59.53;MQ0=0;MQRankSum=-1.262;QD=11.14;ReadPosRankSum=1.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:50,38:88:99:1011,0,1541
6    56371698    rs9296848    A    G    618.03    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.763;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=17.66;ReadPosRankSum=-0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:16,19:35:99:648,0,516
6    56374754    rs9296849    C    A    439.65    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.162;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=-0.794;QD=17.59;ReadPosRankSum=-0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:11,14:25:99:470,0,385
6    56381912    rs4715626    G    A    1023.91    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=6.078;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5149;MQ=59.7;MQ0=0;MQRankSum=1.359;QD=13.13;ReadPosRankSum=-0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:44,34:78:99:1054,0,1212
6    56394173    rs9357922    T    C    208.21    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.491;QD=11.57;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:9,8:17:99:238,0,297
6    56395051    rs6939305    C    A    344.49    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=16.4;ReadPosRankSum=1.514;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524186    GT:AD:DP:GQ:PL    0/1:10,11:21:99:374,0,347
6    56399731    rs7758054    A    T    135.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.88;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524186    GT:AD:DP:GQ:PL    0/1:3,5:8:90.03:165,0,90
6    56417282    rs4715630    C    T    2574.43    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.005;DB;DP=153;Dels=0.0;FS=5.903;HRun=0;HaplotypeScore=3.3225;MQ=59.85;MQ0=0;MQRankSum=-1.128;QD=16.83;ReadPosRankSum=0.472;SNPEFF_AMINO_ACID_CHANGE=M2813I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56416982_56418453;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:72,81:153:99:2604,0,2331
6    56417545    rs4715631    T    C    1871.20    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=1.659;DB;DP=140;Dels=0.0;FS=2.146;HRun=0;HaplotypeScore=3.6781;MQ=59.67;MQ0=0;MQRankSum=1.257;QD=13.37;ReadPosRankSum=-0.682;SNPEFF_AMINO_ACID_CHANGE=T2726A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56416982_56418453;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:75,64:140:99:1901,0,2323
6    56420538    rs11756977    C    T    2446.97    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=5.181;DB;DP=127;Dels=0.0;FS=8.627;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.518;QD=19.27;ReadPosRankSum=-0.042;SNPEFF_AMINO_ACID_CHANGE=R2291H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56420143_56420638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:52,74:127:99:2477,0,1419
6    56507135    rs1024195    T    C    200.24    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.61;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244364    GT:AD:DP:GQ:PL    0/1:1,6:7:18.94:230,0,19
6    56566621    rs13206849    T    C    375.07    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.288;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.041;QD=12.93;ReadPosRankSum=-0.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312431    GT:AD:DP:GQ:PL    0/1:17,12:29:99:405,0,609
6    56566630    rs13191164    G    A    518.50    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=4.809;DB;DP=39;Dels=0.0;FS=6.623;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.745;QD=13.29;ReadPosRankSum=-1.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312431    GT:AD:DP:GQ:PL    0/1:20,19:39:99:548,0,605
6    56569084    .    A    G    527.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.285;DP=38;Dels=0.0;FS=1.463;HRun=0;HaplotypeScore=0.9578;MQ=59.39;MQ0=0;MQRankSum=0.642;QD=13.88;ReadPosRankSum=-0.496;SNPEFF_AMINO_ACID_CHANGE=D119;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56569078_56569167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520645    GT:AD:DP:GQ:PL    0/1:19,19:38:99:557,0,519
6    56569104    rs16888128    A    G    473.79    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.562;DB;DP=43;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.405;QD=11.02;ReadPosRankSum=1.346;SNPEFF_AMINO_ACID_CHANGE=L113;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56569078_56569167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520645    GT:AD:DP:GQ:PL    0/1:23,20:43:99:504,0,700
6    56600121    rs41267675    G    A    903.83    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.593;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.628;QD=23.18;ReadPosRankSum=0.563;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312431    GT:AD:DP:GQ:PL    0/1:12,27:39:99:934,0,320
6    56707719    rs13192931    C    A    39.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.026;QD=7.97;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312431    GT:AD:DP:GQ:PL    0/1:3,2:5:69.04:70,0,69
6    56716075    rs13207768    C    A    91.40    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=11.42;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370754    GT:AD:DP:GQ:PL    0/1:3,5:8:99:121,0,101
6    56765025    rs3839585    ACTAT    A    399.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=40.9928;IndelType=D;MQ=53.95;MQ0=0;QD=49.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370754    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:442,24,0
6    56818706    rs986245    T    C    282.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370754    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:316,27,0
6    56846334    rs9396247    A    G    133.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEND6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322055    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
6    56873069    rs6925819    T    C    647    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEND6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322055    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:680,57,0
6    56917520    rs36113897    T    C    674.50    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=55;Dels=0.0;FS=5.606;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.463;QD=12.26;ReadPosRankSum=0.701;SNPEFF_AMINO_ACID_CHANGE=F48L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56917484_56919836;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1586;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545356    GT:AD:DP:GQ:PL    0/1:28,27:55:99:704,0,819
6    56918647    rs61740373    T    C    363.78    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.06;DB;DP=31;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.541;QD=11.73;ReadPosRankSum=-1.381;SNPEFF_AMINO_ACID_CHANGE=I423;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_56917484_56919836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1586;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545356    GT:AD:DP:GQ:PL    0/1:18,13:31:99:394,0,657
6    56964127    rs13206250    A    G    343.46    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.362;QD=19.08;ReadPosRankSum=0.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF451;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477046    GT:AD:DP:GQ:PL    0/1:7,11:18:99:373,0,232
6    57191021    rs11400419    A    AG    270.49    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.452;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=60.095;IndelType=I;MQ=60.49;MQ0=0;MQRankSum=-0.675;QD=12.3;ReadPosRankSum=-0.036;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000274891    GT:AD:DP:GQ:PL    0/1:13,9:22:99:310,0,382
6    57244509    rs5011405    T    G    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=18.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
6    57244672    rs5011404    G    A    733.17    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.541;DB;DP=60;Dels=0.0;FS=5.51;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.126;QD=12.22;ReadPosRankSum=-0.452;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:32,28:60:99:763,0,1113
6    57244780    rs5011403    G    A    909.06    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.295;DB;DP=87;Dels=0.0;FS=0.942;HRun=1;HaplotypeScore=3.4504;MQ=59.74;MQ0=0;MQRankSum=-0.189;QD=10.33;ReadPosRankSum=-0.872;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:55,32:87:99:939,0,1631
6    57244830    rs5011402    T    A    410.84    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.916;QD=9.34;ReadPosRankSum=1.882;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:29,15:44:99:441,0,1035
6    57244893    rs5011401    T    C    155.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.45;MQ0=0;MQRankSum=-0.71;QD=10.37;ReadPosRankSum=-0.323;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:9,6:15:99:186,0,272
6    57244979    rs5011400    G    A    33.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.74;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:3,2:5:63.69:64,0,96
6    57244982    rs5011399    C    T    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=-1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:2,2:4:56.65:71,0,57
6    57246638    rs6913328    C    T    69.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.7;ReadPosRankSum=-1.517;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,183
6    57246708    rs6913779    G    T    815.67    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.338;DB;DP=46;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.24;MQ0=0;MQRankSum=1.341;QD=17.73;ReadPosRankSum=-0.587;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:20,26:46:99:846,0,697
6    57246773    rs113849959    T    TAGG    2726.82    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=7.477;DB;DP=95;FS=0.0;HRun=0;HaplotypeScore=678.3171;IndelType=I;MQ=56.53;MQ0=0;MQRankSum=-1.363;QD=28.4;ReadPosRankSum=-0.785;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:55,41:95:99:2766,0,1978
6    57246785    rs62415470    A    C    1313.44    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.029;DB;DP=108;Dels=0.0;FS=0.945;HRun=0;HaplotypeScore=1.5226;MQ=56.82;MQ0=0;MQRankSum=-1.443;QD=12.16;ReadPosRankSum=-1.536;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:56,52:108:99:1343,0,1857
6    57246815    rs6936571    T    C    1692.75    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=4.05;DB;DP=153;Dels=0.0;FS=1.43;HRun=0;HaplotypeScore=5.2226;MQ=57.62;MQ0=0;MQRankSum=-1.207;QD=11.06;ReadPosRankSum=-1.442;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:82,71:153:99:1723,0,2639
6    57246847    rs2230042    C    T    1251.99    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=177;Dels=0.0;FS=4.098;HRun=1;HaplotypeScore=0.5784;MQ=57.95;MQ0=0;MQRankSum=1.968;QD=7.07;ReadPosRankSum=-1.209;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:129,48:177:99:1282,0,4289
6    57246884    rs6913546    A    G    3036.61    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=3.961;DB;DP=210;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.872;MQ=58.67;MQ0=0;MQRankSum=-0.725;QD=14.46;ReadPosRankSum=-0.623;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:107,102:210:99:3067,0,3212
6    57246969    rs4256440    G    A    2076.69    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.837;DB;DP=158;Dels=0.0;FS=8.234;HRun=1;HaplotypeScore=1.6553;MQ=58.59;MQ0=0;MQRankSum=0.055;QD=13.06;ReadPosRankSum=0.969;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:88,70:158:99:2107,0,2653
6    57246982    rs4585567    G    T    1676.92    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.765;DB;DP=140;Dels=0.0;FS=11.206;HRun=2;HaplotypeScore=2.3565;MQ=58.57;MQ0=0;MQRankSum=-0.38;QD=11.98;ReadPosRankSum=0.747;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:81,59:140:99:1707,0,2543
6    57247022    rs4382263    C    T    659.98    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=79;Dels=0.0;FS=2.645;HRun=0;HaplotypeScore=6.0265;MQ=59.42;MQ0=0;MQRankSum=-0.838;QD=8.35;ReadPosRankSum=-1.425;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:51,27:79:99:690,0,1825
6    57247093    rs4499918    A    T    242.09    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.706;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=57.48;MQ0=0;MQRankSum=-0.235;QD=8.65;ReadPosRankSum=-1.364;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:17,11:28:99:272,0,624
6    57247108    rs4507595    G    A    207.26    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=22;Dels=0.0;FS=3.882;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=0.668;QD=9.42;ReadPosRankSum=-2.137;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:13,9:22:99:237,0,465
6    57247121    rs4310040    T    C    111.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=15;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.898;QD=7.46;ReadPosRankSum=-1.041;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:10,5:15:99:142,0,369
6    57372116    rs9382768    T    C    64.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=9.24;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:3,4:7:94.69:95,0,95
6    57372199    rs9382769    T    C    1201.87    PASS    AB=0.283;AC=1;AF=0.50;AN=2;BaseQRankSum=2.241;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.7;MQ0=0;MQRankSum=-0.405;QD=22.68;ReadPosRankSum=-1.274;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:15,38:53:99:1232,0,456
6    57372361    rs9382770    C    A    3498.68    HaplotypeScoreFilter13    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.77;DB;DP=170;Dels=0.0;FS=14.305;HRun=0;HaplotypeScore=28.3681;MQ=59.15;MQ0=0;MQRankSum=-0.518;QD=20.58;ReadPosRankSum=-0.187;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:58,112:170:99:3499,0,1549
6    57372365    rs9396315    A    G    429.51    HaplotypeScoreFilter13    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=162;Dels=0.0;FS=3.086;HRun=2;HaplotypeScore=70.1605;MQ=59.25;MQ0=0;MQRankSum=0.948;QD=2.65;ReadPosRankSum=-0.532;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:135,27:162:99:460,0,4380
6    57372374    rs68090917    CT    C    1289.77    PASS    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=4.729;DB;DP=161;FS=0.0;HRun=2;HaplotypeScore=1040.4045;IndelType=D;MQ=58.95;MQ0=0;MQRankSum=1.836;QD=8.01;ReadPosRankSum=-0.042;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:116,45:161:99:1329,0,4345
6    57372436    rs9382771    G    C    605.32    HaplotypeScoreFilter13    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.6;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=17.1903;MQ=58.45;MQ0=0;MQRankSum=0.44;QD=10.09;ReadPosRankSum=-1.443;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:25,35:60:99:635,0,819
6    57372456    rs11368529    AT    A    112.98    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=3.688;DB;DP=39;FS=0.0;HRun=9;HaplotypeScore=338.4328;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=-0.838;QD=2.9;ReadPosRankSum=-0.126;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:23,10:39:99:152,0,559
6    57372480    rs79601039    A    G    246.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.32;QD=11.76;ReadPosRankSum=-0.604;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:12,9:21:99:277,0,385
6    57372502    rs9349872    G    A    205.38    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9971;MQ=56.25;MQ0=0;MQRankSum=-0.204;QD=10.81;ReadPosRankSum=1.755;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:10,9:19:99:235,0,346
6    57372510    rs77697887    T    G    174.66    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8638;MQ=57.05;MQ0=0;MQRankSum=-1.905;QD=10.92;ReadPosRankSum=0.953;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:9,7:16:99:205,0,282
6    57372514    rs77868044    T    C    134.11    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7986;MQ=55.8;MQ0=0;MQRankSum=0.342;QD=7.89;ReadPosRankSum=0.927;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:10,7:17:99:164,0,318
6    57372583    rs9367754    C    T    50.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=8.36;ReadPosRankSum=0.988;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:3,3:6:80.16:80,0,100
6    57392963    rs927193    T    C    80.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.14;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:111,0,67
6    57393029    rs77090024    T    A    164.35    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=0.379;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.79;MQ0=0;MQRankSum=-1.835;QD=6.57;ReadPosRankSum=-0.146;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:17,8:25:99:194,0,602
6    57393034    rs75127850    G    T    156.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.33;MQ0=0;MQRankSum=-0.797;QD=5.81;ReadPosRankSum=-0.489;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:18,9:27:99:187,0,654
6    57393040    rs74756458    A    T    164.91    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=52.74;MQ0=0;MQRankSum=-2.225;QD=5.69;ReadPosRankSum=-0.665;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:19,10:29:99:195,0,672
6    57393054    rs75725892    G    A    191.86    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=3.506;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5253;MQ=53.7;MQ0=0;MQRankSum=-2.11;QD=5.19;ReadPosRankSum=-0.282;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:26,11:37:99:222,0,780
6    57393074    rs73752376    A    G    314.96    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=2.819;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.64;MQ0=0;MQRankSum=-1.503;QD=5.43;ReadPosRankSum=-1.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:41,17:58:99:345,0,1387
6    57393092    rs73752377    T    A    318.11    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.28;DB;DP=72;Dels=0.0;FS=1.444;HRun=0;HaplotypeScore=3.7516;MQ=56.17;MQ0=0;MQRankSum=-2.28;QD=4.42;ReadPosRankSum=0.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:53,18:72:99:348,0,1830
6    57393125    rs927192    A    G    2125.35    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.555;DB;DP=112;Dels=0.0;FS=0.825;HRun=1;HaplotypeScore=2.9328;MQ=57.78;MQ0=0;MQRankSum=-1.031;QD=18.98;ReadPosRankSum=0.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:42,70:112:99:2155,0,1147
6    57393160    rs76686926    G    A    772.14    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=124;Dels=0.0;FS=5.436;HRun=2;HaplotypeScore=4.3704;MQ=57.81;MQ0=0;MQRankSum=0.474;QD=6.23;ReadPosRankSum=0.793;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:89,35:124:99:802,0,2749
6    57393199    rs2397502    C    A    628.27    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.351;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=57.93;MQ0=0;MQRankSum=-0.206;QD=6.04;ReadPosRankSum=0.814;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:76,28:104:99:658,0,2298
6    57393216    rs2397503    G    T    1080.47    HaplotypeScoreFilter13    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.751;DB;DP=80;Dels=0.0;FS=2.02;HRun=1;HaplotypeScore=17.7452;MQ=57.89;MQ0=0;MQRankSum=-0.446;QD=13.51;ReadPosRankSum=-0.986;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1110,0,1202
6    57393222    rs111989160    A    G    246.59    HaplotypeScoreFilter13    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=0.96;DB;DP=77;Dels=0.0;FS=6.85;HRun=0;HaplotypeScore=31.7477;MQ=57.5;MQ0=0;MQRankSum=-1.247;QD=3.2;ReadPosRankSum=-0.175;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:59,18:77:99:277,0,1943
6    57393228    rs112156516    G    A    236.55    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=70;Dels=0.0;FS=7.903;HRun=0;HaplotypeScore=1.7781;MQ=58.33;MQ0=0;MQRankSum=-1.699;QD=3.38;ReadPosRankSum=-0.007;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:53,17:70:99:267,0,1783
6    57393278    rs75909609    T    C    404.33    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=57.2;MQ0=0;MQRankSum=0.84;QD=9.63;ReadPosRankSum=0.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:27,15:42:99:434,0,977
6    57393329    rs76564922    G    T    249.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.743;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.9888;MQ=55.0;MQ0=0;MQRankSum=0.537;QD=10.4;ReadPosRankSum=0.239;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:15,9:24:99:280,0,530
6    57393337    .    T    TA    136.68    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=1.056;DP=19;FS=0.0;HRun=0;HaplotypeScore=172.1274;IndelType=I;MQ=53.61;MQ0=0;MQRankSum=-2.324;QD=7.19;ReadPosRankSum=0.127;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:13,6:19:99:176,0,208
6    57393338    rs78720065    T    A    97.48    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=19;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=11.9888;MQ=53.61;MQ0=0;MQRankSum=-1.009;QD=5.13;ReadPosRankSum=-0.044;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:6,13:19:99:127,0,207
6    57393350    rs2397505    G    A    140.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.52;MQ0=0;MQRankSum=-0.648;QD=9.37;ReadPosRankSum=0.177;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:9,6:15:99:171,0,326
6    57393408    rs9476077    G    T    35.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.1;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:3,2:5:65.50:65,0,101
6    57393466    rs9476078    C    G    91.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    57397944    rs7770986    A    G    41.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.45;ReadPosRankSum=-0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:72,0,34
6    57397982    rs7771127    C    A    265.81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.416;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=53.95;MQ0=0;MQRankSum=-1.473;QD=16.61;ReadPosRankSum=0.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:6,9:16:99:296,0,208
6    57398008    rs7771257    C    T    568.34    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.061;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.51;MQ0=0;MQRankSum=0.43;QD=17.22;ReadPosRankSum=-0.131;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:12,21:33:99:598,0,399
6    57398009    rs7771114    A    G    563.03    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.029;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.51;MQ0=0;MQRankSum=-0.879;QD=17.06;ReadPosRankSum=-0.243;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:12,21:33:99:593,0,382
6    57398028    rs67286646    TG    T    311.23    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.432;DB;DP=51;FS=0.0;HRun=1;HaplotypeScore=551.1735;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=0.011;QD=6.1;ReadPosRankSum=0.944;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:39,12:51:99:350,0,1469
6    57398047    rs76081480    A    C    739.81    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=55.96;MQ0=0;MQRankSum=1.684;QD=11.21;ReadPosRankSum=1.271;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:38,28:66:99:770,0,1343
6    57398058    rs7771283    C    G    323.60    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.073;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5546;MQ=55.93;MQ0=0;MQRankSum=0.71;QD=3.9;ReadPosRankSum=-0.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:64,19:83:99:354,0,2266
6    57398081    rs7753294    T    G    1863.77    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=5.744;DB;DP=112;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5317;MQ=55.43;MQ0=0;MQRankSum=-2.254;QD=16.64;ReadPosRankSum=1.045;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:46,66:112:99:1894,0,1272
6    57398117    .    T    TA    950.61    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=6.045;DP=191;FS=1.9;HRun=0;HaplotypeScore=2056.9045;IndelType=I;MQ=55.06;MQ0=0;MQRankSum=-1.981;QD=4.98;ReadPosRankSum=0.381;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:147,44:191:99:990,0,5202
6    57398154    rs80081867    T    C    3660.37    SnpCluster    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.689;DB;DP=249;DS;Dels=0.0;FS=0.535;HRun=1;HaplotypeScore=0.0;MQ=53.15;MQ0=0;MQRankSum=-3.512;QD=14.7;ReadPosRankSum=0.652;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:103,146:249:99:3660,0,3137
6    57398157    rs9476080    A    G    3942.33    SnpCluster    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=5.189;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8653;MQ=53.48;MQ0=0;MQRankSum=-3.343;QD=15.83;ReadPosRankSum=0.542;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:103,146:249:99:3942,0,2899
6    57398163    rs9476081    A    G    3693.41    SnpCluster    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.654;DB;DP=249;DS;Dels=0.0;FS=0.513;HRun=0;HaplotypeScore=4.6305;MQ=53.82;MQ0=0;MQRankSum=-3.554;QD=14.77;ReadPosRankSum=0.123;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:103,146:249:99:3693,0,3159
6    57398186    rs147418176    G    GA    2054.71    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=5.748;DB;DP=247;DS;FS=8.612;HRun=4;HaplotypeScore=2873.5724;IndelType=I;MQ=54.2;MQ0=0;MQRankSum=-0.79;QD=8.32;ReadPosRankSum=-0.517;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:179,67:247:99:2094,0,4888
6    57398201    rs62398997    T    C    3682.88    HaplotypeScoreFilter13    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.598;DB;DP=239;DS;Dels=0.0;FS=10.041;HRun=0;HaplotypeScore=29.6509;MQ=54.09;MQ0=0;MQRankSum=-2.797;QD=15.41;ReadPosRankSum=-0.896;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:93,146:239:99:3683,0,2889
6    57398207    rs71214816    G    T    151.34    HaplotypeScoreFilter13;QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.074;DB;DP=242;DS;Dels=0.0;FS=2.771;HRun=1;HaplotypeScore=31.5249;MQ=54.27;MQ0=0;MQRankSum=-4.3;QD=0.63;ReadPosRankSum=1.317;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:212,30:242:99:181,0,7042
6    57398226    rs77436138    T    G    2191.44    HaplotypeScoreFilter13    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=3.698;DB;DP=245;DS;Dels=0.0;FS=7.801;HRun=1;HaplotypeScore=66.2378;MQ=55.29;MQ0=0;MQRankSum=-2.307;QD=8.94;ReadPosRankSum=-0.592;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:99,83:245:99:2221,0,3003
6    57398264    rs62398998    A    G    4818.57    HaplotypeScoreFilter13    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=6.764;DB;DP=250;DS;Dels=0.0;FS=2.267;HRun=1;HaplotypeScore=65.763;MQ=56.14;MQ0=0;MQRankSum=-0.907;QD=19.27;ReadPosRankSum=-0.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:92,158:250:99:4819,0,2846
6    57398270    rs62398999    C    T    1530.61    HaplotypeScoreFilter13    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.823;DB;DP=249;DS;Dels=0.0;FS=2.589;HRun=0;HaplotypeScore=67.9845;MQ=55.93;MQ0=0;MQRankSum=-2.599;QD=6.15;ReadPosRankSum=0.132;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:183,66:249:99:1561,0,6142
6    57398335    rs4715745    A    T    2805.59    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.318;DB;DP=166;DS;Dels=0.0;FS=3.062;HRun=0;HaplotypeScore=1.966;MQ=57.31;MQ0=0;MQRankSum=-1.133;QD=16.9;ReadPosRankSum=-0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470638    GT:AD:DP:GQ:PL    0/1:63,103:166:99:2836,0,1850
6    57398385    rs67687103    A    AT    733.69    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=3.614;DB;DP=108;FS=2.712;HRun=9;HaplotypeScore=628.1229;IndelType=I;MQ=57.61;MQ0=0;MQRankSum=0.477;QD=6.79;ReadPosRankSum=0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470638    GT:AD:DP:GQ:PL    0/1:79,29:108:99:773,0,1302
6    57398412    rs6937166    A    G    695.20    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=0.87;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.83;MQ0=0;MQRankSum=-1.34;QD=10.38;ReadPosRankSum=0.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470638    GT:AD:DP:GQ:PL    0/1:43,24:67:99:725,0,1521
6    57398491    rs6937368    C    T    90.03    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=6.0;ReadPosRankSum=-0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470638    GT:AD:DP:GQ:PL    0/1:11,4:15:99:120,0,412
6    57466787    rs6924157    G    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    57466844    rs12197381    G    A    73.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.53;ReadPosRankSum=1.754;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,135
6    57466871    rs79082382    G    A    32.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.42;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:4,2:6:62.49:62,0,152
6    57466891    rs12210717    A    T    89.96    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=56.43;MQ0=0;MQRankSum=-0.831;QD=7.5;ReadPosRankSum=-0.244;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:5,7:12:99:120,0,174
6    57466915    rs12205876    T    A    269.99    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9989;MQ=56.95;MQ0=0;MQRankSum=-0.667;QD=19.28;ReadPosRankSum=-0.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:5,9:14:99:300,0,158
6    57466922    rs2894917    T    C    382.85    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=57.5;MQ0=0;MQRankSum=-0.053;QD=22.52;ReadPosRankSum=-0.369;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:5,12:17:99:413,0,157
6    57466957    rs9885746    C    T    173.30    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.909;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.998;MQ=57.11;MQ0=0;MQRankSum=-0.444;QD=5.59;ReadPosRankSum=-0.275;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:21,10:31:99:203,0,746
6    57466958    rs12212128    A    G    586.94    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.988;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.9977;MQ=57.2;MQ0=0;MQRankSum=-0.061;QD=18.34;ReadPosRankSum=1.809;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:10,22:32:99:617,0,309
6    57466969    rs12212129    A    G    455.42    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.627;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.93;MQ0=0;MQRankSum=2.571;QD=10.59;ReadPosRankSum=0.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:26,17:43:99:485,0,925
6    57466987    rs12205887    T    C    562.74    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=3.149;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.47;MQ0=0;MQRankSum=0.941;QD=9.7;ReadPosRankSum=-0.237;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:38,20:58:99:593,0,1353
6    57467084    rs9885913    A    G    1197.18    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.403;DB;DP=159;Dels=0.0;FS=5.547;HRun=1;HaplotypeScore=1.4725;MQ=59.13;MQ0=0;MQRankSum=0.514;QD=7.53;ReadPosRankSum=0.054;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:110,49:159:99:1227,0,3659
6    57467093    rs9885916    A    G    1282.34    HaplotypeScoreFilter13    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.142;DB;DP=169;Dels=0.0;FS=9.079;HRun=0;HaplotypeScore=46.6422;MQ=58.62;MQ0=0;MQRankSum=-3.014;QD=7.59;ReadPosRankSum=-1.053;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:113,55:169:99:1312,0,3586
6    57467100    rs4535533    G    C    3046.79    HaplotypeScoreFilter13    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.206;DB;DP=171;Dels=0.0;FS=0.582;HRun=0;HaplotypeScore=51.623;MQ=58.64;MQ0=0;MQRankSum=-1.307;QD=17.82;ReadPosRankSum=-0.124;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:66,105:171:99:3077,0,1994
6    57467107    rs9885751    C    T    1331.23    HaplotypeScoreFilter13    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=3.967;DB;DP=177;Dels=0.0;FS=2.002;HRun=0;HaplotypeScore=48.355;MQ=58.82;MQ0=0;MQRankSum=-3.165;QD=7.52;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:117,60:177:99:1361,0,3561
6    57467175    rs4406234    A    G    1162.22    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=0.881;DB;DP=173;Dels=0.0;FS=5.436;HRun=0;HaplotypeScore=1.577;MQ=58.32;MQ0=0;MQRankSum=0.877;QD=6.72;ReadPosRankSum=0.535;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:125,48:173:99:1192,0,4022
6    57467279    rs6459263    T    C    674.67    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DB;DP=62;Dels=0.0;FS=3.42;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=-0.327;QD=10.88;ReadPosRankSum=0.085;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:35,27:62:99:705,0,1189
6    57467282    rs6459264    T    C    477.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.489;DB;DP=55;Dels=0.0;FS=4.085;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.318;QD=8.69;ReadPosRankSum=1.211;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:33,22:55:99:508,0,1122
6    57467303    rs1022846    A    G    1115.74    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=1.759;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=56.93;MQ0=0;MQRankSum=-0.859;QD=27.89;ReadPosRankSum=0.654;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:5,35:40:88.12:1146,0,88
6    57467317    rs4637646    G    T    152.44    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7297;MQ=56.77;MQ0=0;MQRankSum=-1.099;QD=4.01;ReadPosRankSum=0.137;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:29,9:38:99:182,0,1081
6    57467323    rs4424069    G    C    167.24    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.304;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7297;MQ=57.8;MQ0=0;MQRankSum=-0.629;QD=4.92;ReadPosRankSum=0.386;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:26,8:34:99:197,0,957
6    57472212    rs9296899    T    A    69.32    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.86;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:99,0,68
6    57472255    rs9296900    C    T    184.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=16.78;ReadPosRankSum=0.143;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:5,6:11:99:215,0,176
6    57472299    rs9396358    A    G    42.43    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.217;QD=2.83;ReadPosRankSum=1.083;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:12,3:15:72.43:72,0,343
6    57472315    rs9296901    A    G    142.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=14;Dels=0.0;FS=7.83;HRun=1;HaplotypeScore=3.9953;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=10.19;ReadPosRankSum=0.715;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:6,8:14:99:173,0,144
6    57472344    rs111230027    A    AT    234.49    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=24;FS=7.829;HRun=6;HaplotypeScore=112.4624;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=-0.134;QD=9.77;ReadPosRankSum=-0.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:15,9:24:99:274,0,331
6    57472495    rs62400219    C    G    126.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7867;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=8.43;ReadPosRankSum=1.531;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:10,5:15:99:156,0,310
6    57472533    rs9367767    T    C    174.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=15.88;ReadPosRankSum=-1.932;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:5,6:11:99:205,0,175
6    57472534    rs74369127    T    C    127.55    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=11.6;ReadPosRankSum=-1.749;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:6,5:11:99:158,0,204
6    57472683    rs9357987    G    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    57498894    rs3846934    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    57498944    rs3846935    G    C    80.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.11;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:110,0,29
6    57499251    rs3857623    C    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    57512340    rs4364484    C    T    175.40    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=17.54;ReadPosRankSum=-0.633;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:4,6:10:99:205,0,121
6    57512352    rs5001077    A    T    60.59    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=5.51;ReadPosRankSum=1.708;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:8,3:11:90.58:91,0,306
6    57512439    rs4294006    T    C    606.73    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=3.855;DB;DP=66;Dels=0.0;FS=2.635;HRun=0;HaplotypeScore=0.9973;MQ=59.65;MQ0=0;MQRankSum=-0.551;QD=9.19;ReadPosRankSum=0.661;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:45,21:66:99:637,0,1475
6    57512476    rs4307164    G    A    2110.38    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.258;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.748;QD=19.72;ReadPosRankSum=-0.815;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:38,69:107:99:2140,0,1209
6    57512510    rs4294007    T    G    4419.36    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.356;DB;DP=154;Dels=0.0;FS=1.588;HRun=0;HaplotypeScore=0.8941;MQ=58.95;MQ0=0;MQRankSum=0.361;QD=28.7;ReadPosRankSum=-0.013;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:22,132:154:99:4419,0,435
6    57512529    rs5001076    C    A    2090.90    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=6.409;DB;DP=183;Dels=0.0;FS=1.783;HRun=2;HaplotypeScore=1.5774;MQ=58.6;MQ0=0;MQRankSum=-0.24;QD=11.43;ReadPosRankSum=-1.397;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:111,72:183:99:2121,0,3804
6    57512565    rs4294008    T    C    5600.29    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=3.255;DB;DP=250;DS;Dels=0.0;FS=3.042;HRun=1;HaplotypeScore=3.6925;MQ=57.64;MQ0=0;MQRankSum=-2.091;QD=22.4;ReadPosRankSum=0.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:80,170:250:99:5600,0,2399
6    57512678    rs4398719    G    A    4110.92    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=1.603;DB;DP=239;DS;Dels=0.0;FS=0.549;HRun=1;HaplotypeScore=1.7882;MQ=57.5;MQ0=0;MQRankSum=-1.638;QD=17.2;ReadPosRankSum=-0.208;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:98,141:239:99:4111,0,3129
6    57512711    rs5001484    G    C    1986.72    HaplotypeScoreFilter13    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=1.676;DB;DP=228;DS;Dels=0.0;FS=2.641;HRun=0;HaplotypeScore=61.8754;MQ=56.42;MQ0=0;MQRankSum=-1.447;QD=8.71;ReadPosRankSum=-0.073;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:94,71:228:99:2017,0,3059
6    57512718    rs5001483    T    A    1372.60    HaplotypeScoreFilter13    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.403;DB;DP=213;DS;Dels=0.0;FS=6.573;HRun=0;HaplotypeScore=59.1447;MQ=55.35;MQ0=0;MQRankSum=-0.091;QD=6.44;ReadPosRankSum=-0.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:147,65:213:99:1403,0,5010
6    57512775    rs7773110    T    G    1533.17    PASS    AB=0.33;AC=1;AF=0.50;AN=2;BaseQRankSum=3.279;DB;DP=112;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.81;MQ0=0;MQRankSum=-5.92;QD=13.69;ReadPosRankSum=-2.351;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:37,75:112:99:1563,0,1223
6    57512779    rs76296076    G    T    1416.04    HaplotypeScoreFilter13    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=105;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=21.9581;MQ=45.79;MQ0=0;MQRankSum=-6.101;QD=13.49;ReadPosRankSum=-2.403;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:35,70:105:99:1446,0,1109
6    57512787    .    T    TCACCAAGGC    2973.37    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=5.907;DP=49;DS;FS=0.0;HRun=0;HaplotypeScore=923.0701;IndelType=I;MQ=48.59;MQ0=0;MQRankSum=-5.928;QD=60.68;ReadPosRankSum=2.597;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:27,22:49:99:3012,0,2153
6    57512788    .    T    TTA    965.64    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=5.733;DP=46;FS=0.0;HRun=0;HaplotypeScore=910.3523;IndelType=I;MQ=47.75;MQ0=0;MQRankSum=-5.756;QD=20.99;ReadPosRankSum=1.919;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:24,21:46:99:1005,0,984
6    57512793    .    AATT    A    1026.63    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=5.6;DP=43;FS=0.0;HRun=0;HaplotypeScore=919.7116;IndelType=D;MQ=46.78;MQ0=0;MQRankSum=-5.625;QD=23.88;ReadPosRankSum=1.348;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:21,22:43:99:1066,0,1425
6    57512825    rs72880943    C    T    329.43    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.044;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=47.59;MQ0=0;MQRankSum=-4.148;QD=10.63;ReadPosRankSum=1.369;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:14,17:31:99:359,0,475
6    57512826    rs7752845    A    G    327.67    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.401;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.59;MQ0=0;MQRankSum=-3.87;QD=10.57;ReadPosRankSum=1.171;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:14,17:31:99:358,0,475
6    57512893    rs77348569    C    T    63.03    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9916;MQ=50.65;MQ0=0;MQRankSum=0.956;QD=7.88;ReadPosRankSum=-1.221;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389488    GT:AD:DP:GQ:PL    0/1:5,3:8:93.02:93,0,137
6    58245959    rs142558056    C    G    152.04    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.685;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.73;MQ0=5;MQRankSum=-0.976;QD=5.43;ReadPosRankSum=-0.787;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=XXbac-BPG55C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359343    GT:AD:DP:GQ:PL    0/1:18,10:28:99:182,0,412
6    58246055    rs6918567    T    C    1287.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7262;MQ=25.76;MQ0=7;QD=16.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=XXbac-BPG55C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359343    GT:AD:DP:GQ:PL    1/1:0,76:77:99:1320,138,0
6    58246056    rs6930828    G    A    1298.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=25.72;MQ0=7;QD=17.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=XXbac-BPG55C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359343    GT:AD:DP:GQ:PL    1/1:0,74:75:99:1331,138,0
6    58246143    rs6931014    G    A    4380.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9468;MQ=43.84;MQ0=7;QD=29.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=XXbac-BPG55C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359343    GT:AD:DP:GQ:PL    1/1:0,149:149:99:4380,352,0
6    58250570    rs9500243    A    T    508.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.75;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=XXbac-BPG55C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359343    GT:AD:DP:GQ:PL    1/1:0,17:17:51.03:542,51,0
6    58260059    rs74657950    G    A    71.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.58;MQ0=0;QD=23.76;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=XXbac-BPG55C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359343    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
6    58260138    rs62464086    A    G    61.30    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=36.78;MQ0=0;MQRankSum=0.358;QD=12.26;ReadPosRankSum=1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=XXbac-BPG55C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359343    GT:AD:DP:GQ:PL    0/1:2,3:5:29.74:91,0,30
6    58265128    rs9391382    T    C    370.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.69;MQ0=19;QD=7.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=XXbac-BPG55C20.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406100    GT:AD:DP:GQ:PL    1/1:0,48:48:41.98:404,42,0
6    58287821    rs9404620    A    G    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUSBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399751    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    62390916    rs1204114    T    C    46.05    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=17;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.51;QD=2.71;ReadPosRankSum=-0.057;SNPEFF_AMINO_ACID_CHANGE=Q334;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_62390139_62390965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281156    GT:AD:DP:GQ:PL    0/1:13,4:17:76.04:76,0,446
6    62407067    rs1555167    G    T    490.86    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.195;QD=23.37;ReadPosRankSum=1.907;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281156    GT:AD:DP:GQ:PL    0/1:6,15:21:99:521,0,123
6    62442604    rs10484690    A    G    751.59    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.795;QD=13.19;ReadPosRankSum=-0.369;SNPEFF_AMINO_ACID_CHANGE=Y292;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_62442587_62442669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281156    GT:AD:DP:GQ:PL    0/1:28,29:57:99:782,0,747
6    62611356    rs67450220    ACAAAACG    A    593.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=191.0743;IndelType=D;MQ=48.08;MQ0=0;MQRankSum=0.146;QD=29.66;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281156    GT:AD:DP:GQ:PL    0/1:10,10:20:99:632,0,556
6    62757987    rs9346001    C    T    570.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281156    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:604,48,0
6    62886921    rs10455666    C    T    130.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281156    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
6    62887031    rs9346218    C    T    1073.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281156    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1107,81,0
6    62887099    rs6921170    C    T    1681.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=Q70;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_62887090_62887217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281156    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1714,123,0
6    63921361    rs4710420    A    G    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356170    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
6    63921853    rs9350793    A    G    252.22    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.58;MQ0=0;MQRankSum=-0.612;QD=13.27;ReadPosRankSum=-1.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356170    GT:AD:DP:GQ:PL    0/1:9,10:19:99:282,0,278
6    63921873    rs9359356    A    T    149.04    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.89;MQ0=0;MQRankSum=-1.791;QD=11.46;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356170    GT:AD:DP:GQ:PL    0/1:7,6:13:99:179,0,211
6    63921924    rs9359357    A    G    59.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8773;MQ=54.56;MQ0=0;MQRankSum=-0.406;QD=7.43;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356170    GT:AD:DP:GQ:PL    0/1:3,3:8:89.46:89,0,103
6    63939127    rs11961373    T    C    3004.28    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.129;DB;DP=212;DS;Dels=0.0;FS=1.106;HRun=1;HaplotypeScore=0.9916;MQ=53.63;MQ0=0;MQRankSum=0.224;QD=14.17;ReadPosRankSum=-0.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-184C23.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495602    GT:AD:DP:GQ:PL    0/1:99,113:212:99:3034,0,2931
6    63939602    rs34463002    T    TG    2023.52    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.371;DB;DP=124;FS=1.512;HRun=1;HaplotypeScore=298.6079;IndelType=I;MQ=59.75;MQ0=0;MQRankSum=-1.105;QD=16.19;ReadPosRankSum=0.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=SPTLC1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403408    GT:AD:DP:GQ:PL    0/1:70,55:124:99:2063,0,2139
6    63939795    rs1809272    T    C    1929.01    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.958;DB;DP=131;Dels=0.0;FS=1.592;HRun=1;HaplotypeScore=0.9332;MQ=52.1;MQ0=0;MQRankSum=-3.701;QD=14.73;ReadPosRankSum=0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=SPTLC1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403408    GT:AD:DP:GQ:PL    0/1:57,73:131:99:1959,0,1661
6    63939829    rs1809271    A    T    4552.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9779;MQ=50.85;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=SPTLC1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403408    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4552,352,0
6    63939848    rs1809270    G    A    1804.28    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.793;DB;DP=139;Dels=0.0;FS=2.201;HRun=2;HaplotypeScore=2.7559;MQ=51.51;MQ0=0;MQRankSum=-3.706;QD=12.98;ReadPosRankSum=0.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=SPTLC1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403408    GT:AD:DP:GQ:PL    0/1:68,71:139:99:1834,0,2099
6    63940026    rs3857526    G    A    710.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.831;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=49.46;MQ0=0;MQRankSum=-2.774;QD=19.73;ReadPosRankSum=-3.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=SPTLC1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403408    GT:AD:DP:GQ:PL    0/1:9,27:36:99:740,0,273
6    63940061    rs4035417    A    G    236.20    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.741;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.63;MQ0=0;MQRankSum=-3.802;QD=10.74;ReadPosRankSum=1.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=SPTLC1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403408    GT:AD:DP:GQ:PL    0/1:9,12:22:99:266,0,284
6    64472270    rs4710257    A    C    505.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.799;QD=16.32;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,18:31:99:536,0,406
6    64574392    rs10638627    C    CTT    227.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=10.5773;IndelType=I;MQ=62.13;MQ0=0;QD=45.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:270,15,0
6    65510460    rs34778588    CT    C    128.08    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.071;DB;DP=14;FS=2.774;HRun=13;HaplotypeScore=57.8331;IndelType=D;MQ=59.13;MQ0=0;MQRankSum=0.495;QD=9.15;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    0/1:5,9:14:26.41:167,0,26
6    65596759    rs7743515    G    A    435.35    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=29;Dels=0.0;FS=1.786;HRun=2;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.724;QD=15.01;ReadPosRankSum=2.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    0/1:13,16:29:99:465,0,389
6    65611952    rs59518422    T    TATTA    2477.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=89.8724;IndelType=I;MQ=50.68;MQ0=0;QD=79.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    1/1:0,27:31:93.31:2519,93,0
6    65622463    rs9294631    A    G    2261.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=L852P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_65622377_65622636;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2294,187,0
6    65622662    rs9445437    G    C    1750.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1784,129,0
6    65767633    rs142590049    G    GA    210.72    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=4.256;DB;DP=27;FS=0.0;HRun=1;HaplotypeScore=116.0638;IndelType=I;MQ=59.55;MQ0=0;MQRankSum=-0.208;QD=7.8;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    0/1:16,11:27:99:250,0,552
6    66005609    rs34666704    AT    A    111.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=11;HaplotypeScore=22.9936;IndelType=D;MQ=60.0;MQ0=0;QD=15.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370615    GT:AD:DP:GQ:PL    1/1:1,6:7:20.02:154,20,0
6    66005740    rs35045551    G    GA    1077.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=10;HaplotypeScore=96.2682;IndelType=I;MQ=59.39;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    1/1:3,35:38:99:1120,105,0
6    66005888    rs9342464    C    T    3400.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.52;MQ0=0;QD=35.06;SNPEFF_AMINO_ACID_CHANGE=G631S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_66005756_66006012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3401,247,0
6    66005970    rs9345601    G    A    2858.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=59.14;MQ0=0;QD=35.29;SNPEFF_AMINO_ACID_CHANGE=V603;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_66005756_66006012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2892,220,0
6    66006148    rs9342465    A    C    255.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.69;MQ0=0;QD=25.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370616    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:289,24,0
6    66044927    rs61753610    T    C    1149.07    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.446;DB;DP=74;Dels=0.0;FS=1.949;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=0.565;QD=15.53;ReadPosRankSum=-2.088;SNPEFF_AMINO_ACID_CHANGE=Q571R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_66044803_66045039;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342421    GT:AD:DP:GQ:PL    0/1:33,41:74:99:1179,0,1088
6    66045077    rs1502965    C    T    775.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342421    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:809,60,0
6    66045118    rs1502964    T    C    347.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342421    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:380,33,0
6    66053835    rs1502963    T    G    675.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342421    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:708,54,0
6    66063248    rs9453265    G    A    224.75    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=20.43;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342421    GT:AD:DP:GQ:PL    0/1:4,7:11:99:255,0,108
6    66063513    rs1936439    G    A    1399.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342421    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1433,111,0
6    66112409    rs974110    A    G    2533.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=N382;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_66112371_66112498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342421    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2567,199,0
6    66115281    rs34154043    G    GAA    2866.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=9;HaplotypeScore=240.119;IndelType=I;MQ=60.72;MQ0=0;QD=36.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342421    GT:AD:DP:GQ:PL    1/1:11,62:78:99:2908,201,0
6    66547178    rs4392709    G    A    1647.77    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.987;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.0;MQ0=0;MQRankSum=-0.223;QD=17.72;ReadPosRankSum=1.384;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ADH5P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433151    GT:AD:DP:GQ:PL    0/1:42,51:93:99:1678,0,1223
6    66547293    rs61732137    T    C    1308.50    HaplotypeScoreFilter13    AB=0.402;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=92;Dels=0.0;FS=3.973;HRun=2;HaplotypeScore=24.1676;MQ=57.52;MQ0=0;MQRankSum=-0.53;QD=14.22;ReadPosRankSum=-0.355;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ADH5P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433151    GT:AD:DP:GQ:PL    0/1:37,55:92:99:1338,0,915
6    66547303    .    A    C    50.58    HaplotypeScoreFilter13;QDFilter2    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.158;DP=83;Dels=0.0;FS=56.079;HRun=2;HaplotypeScore=20.5436;MQ=57.24;MQ0=0;MQRankSum=-1.931;QD=0.61;ReadPosRankSum=1.326;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ADH5P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433151    GT:AD:DP:GQ:PL    0/1:50,32:83:80.58:81,0,1699
6    66547322    rs9363455    T    G    918.57    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.56;DB;DP=78;Dels=0.0;FS=1.929;HRun=0;HaplotypeScore=0.8667;MQ=57.93;MQ0=0;MQRankSum=0.731;QD=11.78;ReadPosRankSum=0.932;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ADH5P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433151    GT:AD:DP:GQ:PL    0/1:44,34:78:99:949,0,1377
6    66803240    rs145237546    GA    G    279.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.923;DB;DP=24;FS=3.183;HRun=6;HaplotypeScore=59.5176;IndelType=D;MQ=60.45;MQ0=0;MQRankSum=-0.231;QD=11.66;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP1-129L7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402902    GT:AD:DP:GQ:PL    0/1:12,12:24:99:319,0,324
6    66803535    rs2881644    C    A    1261.25    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=87;Dels=0.0;FS=10.763;HRun=4;HaplotypeScore=0.9967;MQ=59.2;MQ0=0;MQRankSum=2.017;QD=14.5;ReadPosRankSum=-0.739;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP1-129L7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402902    GT:AD:DP:GQ:PL    0/1:44,42:87:99:1291,0,1403
6    67859739    rs2444635    A    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL590874.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408068    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    69654013    rs139383862    A    G    144.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.66;QD=11.12;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    0/1:7,6:13:99:175,0,254
6    69666195    rs28734080    G    A    71.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    1/1:0,6:6:9.01:104,9,0
6    69666684    rs1932618    A    G    2154.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.27;MQ0=0;QD=34.21;SNPEFF_AMINO_ACID_CHANGE=N503S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_69666537_69666701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2188,163,0
6    69724069    rs1336655    G    A    289.52    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=15.24;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    0/1:9,10:19:99:320,0,321
6    69728522    rs2785573    C    T    127.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
6    69759148    rs618372    A    T    1067.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=59.45;MQ0=0;QD=25.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    1/1:0,42:42:93.27:1101,93,0
6    69772817    rs2793459    C    G    731.34    PASS    AB=0.207;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.696;QD=25.22;ReadPosRankSum=-1.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    0/1:6,23:29:99:761,0,141
6    69785765    rs3757050    C    G    113.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=12.6;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    0/1:5,4:9:99:143,0,139
6    69786046    rs35445308    G    GA    405.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=9;HaplotypeScore=58.2602;IndelType=I;MQ=55.29;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    1/1:1,13:14:42.09:448,42,0
6    69943418    rs3215840    A    AG    230.81    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.89;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=49.0441;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.762;QD=10.49;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238918    GT:AD:DP:GQ:PL    0/1:15,7:22:99:270,0,564
6    70071173    rs913543    G    A    1778.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_AMINO_ACID_CHANGE=P1336;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_70070761_70071404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370598    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1812,132,0
6    70589630    rs6919210    G    C    225.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=16.12;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:7,7:14:99:256,0,250
6    70744264    rs7764390    G    C    503.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=34;Dels=0.0;FS=6.435;HRun=0;HaplotypeScore=0.9789;MQ=59.32;MQ0=0;MQRankSum=-0.054;QD=14.8;ReadPosRankSum=-1.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:17,17:34:99:533,0,539
6    70812123    rs7772672    A    G    1938.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1971,147,0
6    70812273    rs11759810    A    G    112.67    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=12.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:5,4:9:99:143,0,174
6    70875976    rs802174    T    G    352.36    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;MQRankSum=-0.033;QD=16.02;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:10,12:22:99:382,0,341
6    70878156    rs62421668    A    G    333.67    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.114;DB;DP=36;Dels=0.0;FS=1.321;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.665;QD=9.27;ReadPosRankSum=0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:22,14:36:99:364,0,735
6    70894894    rs2296006    C    A    348.36    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.791;QD=20.49;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:5,12:17:99:378,0,137
6    70897967    rs3828775    G    A    240.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.472;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=13.34;ReadPosRankSum=0.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:9,9:18:99:270,0,240
6    70909252    rs66500780    AT    A    111.96    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=14;FS=3.256;HRun=6;HaplotypeScore=31.5457;IndelType=D;MQ=60.77;MQ0=0;MQRankSum=1.226;QD=8.0;ReadPosRankSum=0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:8,6:14:99:151,0,268
6    70916888    rs1200576    A    C    2601.86    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=5.036;DB;DP=180;Dels=0.0;FS=4.568;HRun=3;HaplotypeScore=0.8321;MQ=57.84;MQ0=0;MQRankSum=-1.22;QD=14.45;ReadPosRankSum=-1.48;SNPEFF_AMINO_ACID_CHANGE=P1113;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_70916851_70919679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL19A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322773    GT:AD:DP:GQ:PL    0/1:81,99:180:99:2632,0,2245
6    70926898    rs1200569    G    A    51.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.42;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320755    GT:AD:DP:GQ:PL    0/1:4,3:7:81.95:82,0,147
6    70965125    rs633762    A    C    574.23    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.528;DB;DP=52;Dels=0.0;FS=6.591;HRun=0;HaplotypeScore=0.9665;MQ=59.47;MQ0=0;MQRankSum=1.769;QD=11.04;ReadPosRankSum=1.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320755    GT:AD:DP:GQ:PL    0/1:30,22:52:99:604,0,1007
6    71012575    rs2242588    T    C    1369.77    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.847;DB;DP=115;Dels=0.0;FS=0.709;HRun=2;HaplotypeScore=5.2689;MQ=59.6;MQ0=0;MQRankSum=0.198;QD=11.91;ReadPosRankSum=-0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL9A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357250    GT:AD:DP:GQ:PL    0/1:59,56:115:99:1400,0,1774
6    71187020    .    A    C    80.52    FSFilter60;QDFilter2    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.667;DP=47;Dels=0.0;FS=60.341;HRun=2;HaplotypeScore=3.5544;MQ=59.01;MQ0=0;MQRankSum=-1.186;QD=1.71;ReadPosRankSum=3.433;SNPEFF_AMINO_ACID_CHANGE=H133P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_71186862_71187035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM135A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370479    GT:AD:DP:GQ:PL    0/1:18,29:47:99:111,0,565
6    71238105    rs2747701    A    G    886.64    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.904;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.894;QD=16.73;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=D1029G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_71237995_71238155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM135A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370479    GT:AD:DP:GQ:PL    0/1:22,31:53:99:917,0,649
6    71246206    rs34238069    G    A    186.69    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=26.67;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM135A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361499    GT:AD:DP:GQ:PL    0/1:1,6:7:21.16:217,0,21
6    71482975    rs1413353    G    A    1422.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316999    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1455,108,0
6    71568841    rs3734372    T    C    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316999    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
6    71568935    rs3734371    A    G    747.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316999    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:780,60,0
6    71569090    rs576516    T    C    1884.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.221;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8666;MQ=59.63;MQ0=0;MQRankSum=-0.767;QD=30.4;ReadPosRankSum=1.221;SNPEFF_AMINO_ACID_CHANGE=M416T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_71569032_71569119;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370452    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1918,117,0
6    72010963    rs9346458    G    A    1180.94    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.292;DB;DP=87;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9152;MQ=59.74;MQ0=0;MQRankSum=-0.38;QD=13.57;ReadPosRankSum=0.542;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370435    GT:AD:DP:GQ:PL    0/1:48,39:87:99:1211,0,1676
6    72011579    rs72265796    GAGA    G    804.79    PASS    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=4.804;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=260.0571;IndelType=D;MQ=59.77;MQ0=0;MQRankSum=-0.6;QD=12.57;ReadPosRankSum=-0.19;SNPEFF_AMINO_ACID_CHANGE=EK395E;SNPEFF_CODON_CHANGE=gagaag/gag;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_6_72011089_72011973;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFRL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370435    GT:AD:DP:GQ:PL    0/1:43,21:64:99:844,0,2561
6    72091267    rs5877279    T    TTA    286.59    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=53.9128;IndelType=I;MQ=57.9;MQ0=0;MQRankSum=0.627;QD=16.86;ReadPosRankSum=-1.625;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413945    GT:AD:DP:GQ:PL    0/1:9,8:17:99:326,0,172
6    72806978    rs1528505    G    A    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    72809825    rs9360527    C    T    443.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:476,36,0
6    72858416    rs112534851    GTT    G    538.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=15;HaplotypeScore=200.2199;IndelType=D;MQ=56.99;MQ0=1;QD=17.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    1/1:6,24:29:65.84:580,66,0
6    72889472    rs2249021    A    G    2033.67    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=2.013;DB;DP=146;Dels=0.0;FS=2.138;HRun=0;HaplotypeScore=2.646;MQ=59.68;MQ0=0;MQRankSum=1.976;QD=13.93;ReadPosRankSum=-0.067;SNPEFF_AMINO_ACID_CHANGE=L222;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_72889278_72889618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    0/1:73,72:146:99:2064,0,2267
6    72889711    rs17725666    G    A    588.75    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=34;Dels=0.0;FS=4.218;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.682;QD=17.32;ReadPosRankSum=-0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    0/1:14,20:34:99:619,0,484
6    72892257    rs2463730    A    G    111.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_AMINO_ACID_CHANGE=L361;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_72891987_72892852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
6    72892383    rs114505309    G    A    32.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.2;SNPEFF_AMINO_ACID_CHANGE=A403;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_72891987_72892852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:64,6,0
6    72945117    rs2697443    G    A    72.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    1/1:0,4:4:9:105,9,0
6    72945139    rs2697444    A    G    76.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.37;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    0/1:2,3:5:62.85:107,0,63
6    72945492    rs2807519    C    T    536.19    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.386;DB;DP=41;Dels=0.0;FS=1.777;HRun=1;HaplotypeScore=1.5592;MQ=59.44;MQ0=0;MQRankSum=-0.405;QD=13.08;ReadPosRankSum=-0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    0/1:22,19:41:99:566,0,656
6    72947774    rs2807525    C    T    74.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.46;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    0/1:3,3:6:84.77:105,0,85
6    72961222    rs3798274    G    A    133.12    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    0/1:1,5:6:23.72:163,0,24
6    72968609    rs6923891    C    T    1447.86    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.633;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=59.48;MQ0=0;MQRankSum=1.511;QD=16.27;ReadPosRankSum=-0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    0/1:43,46:89:99:1478,0,1440
6    72984277    rs4504440    G    A    207.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
6    73102219    rs12191762    T    C    85.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.468;QD=7.14;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264839    GT:AD:DP:GQ:PL    0/1:8,4:12:99:116,0,288
6    73108872    rs67994138    AAG    A    786.45    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=3.261;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=172.2667;IndelType=D;MQ=59.41;MQ0=1;MQRankSum=-0.021;QD=14.84;ReadPosRankSum=0.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453976    GT:AD:DP:GQ:PL    0/1:29,24:52:99:825,0,1213
6    73109948    rs7738055    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453976    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    73332121    rs34821312    C    T    71.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.28;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=L68;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_73331520_73332315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342056    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,131
6    73752010    rs4708015    G    A    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443915    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    73821239    rs2000205    T    C    447.15    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=16.56;ReadPosRankSum=0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342056    GT:AD:DP:GQ:PL    0/1:10,16:27:99:477,0,300
6    73834942    rs4706531    T    C    91.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=8.35;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370392    GT:AD:DP:GQ:PL    0/1:6,5:11:99:122,0,204
6    73834965    rs4706532    A    C    93.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=8.52;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370392    GT:AD:DP:GQ:PL    0/1:6,5:11:99:124,0,215
6    73904612    rs17810318    G    A    576.26    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.004;DB;DP=40;Dels=0.0;FS=1.189;HRun=2;HaplotypeScore=0.9999;MQ=58.25;MQ0=0;MQRankSum=-1.3;QD=14.41;ReadPosRankSum=-0.813;SNPEFF_AMINO_ACID_CHANGE=K648;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_73904175_73905137;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414165    GT:AD:DP:GQ:PL    0/1:19,21:40:99:606,0,637
6    74072681    rs9446890    G    C    491.35    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=28;Dels=0.0;FS=3.799;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=17.55;ReadPosRankSum=-1.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370367    GT:AD:DP:GQ:PL    0/1:9,19:28:99:521,0,276
6    74073197    rs17812468    C    G    82.37    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=14.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=7.49;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370367    GT:AD:DP:GQ:PL    0/1:6,5:11:99:112,0,219
6    74073531    rs561930    C    G    652.45    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.198;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;MQRankSum=-0.121;QD=13.88;ReadPosRankSum=2.166;SNPEFF_AMINO_ACID_CHANGE=A201G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74073279_74073894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf221;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370367    GT:AD:DP:GQ:PL    0/1:24,22:46:99:682,0,659
6    74079024    rs496530    A    G    997.70    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=3.39;DB;DP=61;Dels=0.0;FS=3.897;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.096;QD=16.36;ReadPosRankSum=-0.545;SNPEFF_AMINO_ACID_CHANGE=V37A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74078929_74079108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OOEP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370363    GT:AD:DP:GQ:PL    0/1:27,34:61:99:1028,0,808
6    74079041    rs497243    A    C    1763.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.73;MQ0=0;QD=32.06;SNPEFF_AMINO_ACID_CHANGE=V31;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74078929_74079108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OOEP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370363    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1797,138,0
6    74104557    rs558198    C    G    283.35    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.769;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7313;MQ=58.05;MQ0=0;MQRankSum=-0.769;QD=11.81;ReadPosRankSum=-0.277;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464221    GT:AD:DP:GQ:PL    0/1:13,11:24:99:313,0,396
6    74115935    rs66700438    C    CGG    295.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=22.3447;IndelType=I;MQ=27.47;MQ0=0;QD=49.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370336    GT:AD:DP:GQ:PL    1/1:1,5:6:18.06:337,18,0
6    74119084    rs4708053    T    C    1989.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539829    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2022,156,0
6    74122155    rs1869558    G    A    111.39    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=22.28;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539829    GT:AD:DP:GQ:PL    0/1:1,4:5:28.27:141,0,28
6    74125057    rs311687    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479773    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    74125875    rs311686    A    G    669.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=52;Dels=0.0;FS=2.371;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=12.88;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=K625E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74125836_74125974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370336    GT:AD:DP:GQ:PL    0/1:26,26:52:99:700,0,849
6    74125888    rs311685    A    G    576.80    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DB;DP=51;Dels=0.0;FS=4.043;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.491;QD=11.31;ReadPosRankSum=1.494;SNPEFF_AMINO_ACID_CHANGE=Q629R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74125836_74125974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370336    GT:AD:DP:GQ:PL    0/1:29,22:51:99:607,0,813
6    74135016    rs311678    C    T    1379.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=K484;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74134940_74135250;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MB21D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296913    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1413,111,0
6    74155346    rs610913    G    T    2455.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_AMINO_ACID_CHANGE=P261H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74155251_74155470;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MB21D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296913    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2489,184,0
6    74155491    rs2985419    T    C    906.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MB21D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296913    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:939,69,0
6    74161503    rs9446904    A    G    123.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.49;SNPEFF_AMINO_ACID_CHANGE=P134;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74161248_74161999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MB21D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296913    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:156,12,0
6    74161801    rs9352000    G    T    143.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=T35N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74161248_74161999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MB21D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296913    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:176,15,0
6    74171467    rs1713862    C    G    219.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370300    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:253,21,0
6    74176381    rs80102622    G    A    221.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.501;DB;DP=18;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=12.3;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357845    GT:AD:DP:GQ:PL    0/1:9,9:18:99:251,0,296
6    74189574    rs7766570    G    A    986.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357845    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1019,75,0
6    74201813    rs514582    C    T    213.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357845    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:247,21,0
6    74201826    rs34281979    CA    C    79.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=15;HaplotypeScore=67.9625;IndelType=D;MQ=58.24;MQ0=0;QD=11.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357845    GT:AD:DP:GQ:PL    1/1:1,5:7:19.77:121,20,0
6    74202273    rs608026    T    C    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357845    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
6    74228006    rs1874229    A    G    1395.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8658;MQ=53.97;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356303    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1428,117,0
6    74228049    rs1874230    A    G    2213.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=52.68;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356303    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2246,169,0
6    74229258    rs2073466    G    T    1539.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.57;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309268    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1573,117,0
6    74229405    rs4708060    C    A    378.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309268    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:412,30,0
6    74320306    rs4708065    C    T    866.90    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.002;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.572;QD=12.38;ReadPosRankSum=-0.981;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355773    GT:AD:DP:GQ:PL    0/1:37,33:70:99:897,0,1268
6    74320391    rs1691343    T    A    180.25    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.2;MQ0=0;MQRankSum=0.135;QD=13.87;ReadPosRankSum=-1.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355773    GT:AD:DP:GQ:PL    0/1:6,7:13:99:210,0,168
6    74324901    rs615956    T    C    65.13    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=6.51;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355773    GT:AD:DP:GQ:PL    0/1:7,3:10:95.12:95,0,257
6    74325257    rs628038    T    C    320.25    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.457;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.792;QD=16.01;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355773    GT:AD:DP:GQ:PL    0/1:7,13:20:99:350,0,231
6    74433212    rs4706552    T    G    123.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287097    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
6    74445985    rs56286966    G    A    343.83    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=4.188;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.958;QD=13.75;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287097    GT:AD:DP:GQ:PL    0/1:14,11:25:99:374,0,395
6    74466377    rs6453696    C    T    2300.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=Y138;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74466366_74466405;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422508    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2334,172,0
6    74468574    rs45474895    G    A    309.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287097    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:343,27,0
6    74476100    rs55860270    G    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287097    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    74476659    rs146545559    G    GT    426.47    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.878;DB;DP=46;FS=13.23;HRun=7;HaplotypeScore=101.1066;IndelType=I;MQ=60.93;MQ0=0;MQRankSum=-0.414;QD=9.27;ReadPosRankSum=-0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287097    GT:AD:DP:GQ:PL    0/1:30,16:46:99:465,0,494
6    74481076    rs4706554    G    A    375.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287097    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:409,30,0
6    74493432    rs10455097    A    C    1946.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=59.13;MQ0=0;QD=36.73;SNPEFF_AMINO_ACID_CHANGE=Y626S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74493430_74493547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422508    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1980,144,0
6    74517680    rs2882694    T    G    127.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474094    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
6    74533192    rs2917887    T    G    1108.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=31.67;SNPEFF_AMINO_ACID_CHANGE=A1314;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_74533182_74538040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD109;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422508    GT:AD:DP:GQ:PL    1/1:0,35:35:93.27:1141,93,0
6    75797302    rs970547    C    T    2485.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_AMINO_ACID_CHANGE=G1894S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_75797293_75797463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345356    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2519,196,0
6    75798722    rs672648    C    A    79.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=1.9966;MQ=50.65;MQ0=0;QD=9.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511023    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:112,9,0
6    75811880    rs556674    G    A    1362.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1395,105,0
6    75823474    rs141102808    CAAAAG    C    478.44    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.393;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=71.1513;IndelType=D;MQ=52.69;MQ0=0;MQRankSum=-0.348;QD=43.49;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    0/1:2,9:11:63.97:517,0,64
6    75829347    rs636917    T    C    116.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
6    75829373    rs636885    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    75830847    rs620129    G    T    253.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
6    75830974    rs499018    G    C    576.48    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.281;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.37;QD=15.17;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    0/1:16,22:38:99:606,0,487
6    75833876    rs240722    C    A    1365.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1398,102,0
6    75834248    rs51630    T    C    36.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
6    75835993    rs79956561    G    A    230.76    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=12.82;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    0/1:7,11:18:99:261,0,249
6    75838299    rs76961213    T    C    32.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.13;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    0/1:2,2:4:62.53:63,0,71
6    75841722    rs594012    A    T    1670.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=A1957;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_75841656_75841798;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1703,132,0
6    75843845    rs1332778    T    C    33.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.29;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:63,0,70
6    75844600    rs1332020    C    T    446.67    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=23;Dels=0.0;FS=1.824;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.42;QD=19.42;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    0/1:8,15:23:99:477,0,221
6    75844700    rs1332019    C    A    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.2;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    0/1:3,3:6:97.49:103,0,97
6    75890933    rs72363067    T    TA    971.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.025;DB;DP=49;FS=0.0;HRun=13;HaplotypeScore=201.3977;IndelType=I;MQ=59.47;MQ0=0;MQRankSum=0.215;QD=19.84;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:6,40:49:67.37:1014,67,0
6    75893457    rs66881852    TA    T    1387.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=10;HaplotypeScore=173.348;IndelType=D;MQ=60.32;MQ0=0;QD=23.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:3,56:59:99:1430,165,0
6    75901292    rs743003    C    T    423.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:457,33,0
6    75904455    rs240433    A    T    869.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:902,66,0
6    75904844    rs41269313    G    C    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322507    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
6    75950109    rs56897555    T    TA    215.20    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=37;FS=0.0;HRun=16;HaplotypeScore=271.2208;IndelType=I;MQ=54.89;MQ0=0;MQRankSum=-0.315;QD=5.82;ReadPosRankSum=-1.435;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481061    GT:AD:DP:GQ:PL    0/1:19,13:37:24.89:254,0,25
6    75953220    rs240422    A    T    763.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230459    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:797,60,0
6    75966269    rs418485    A    G    140.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518161    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:173,15,0
6    75968720    rs147523    G    A    459.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518161    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:493,39,0
6    75977591    rs240395    T    A    242.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230461    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
6    76022082    rs9352202    A    G    1636.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FILIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237172    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1670,141,0
6    76022090    rs9343281    G    C    1887.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FILIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237172    GT:AD:DP:GQ:PL    1/1:0,56:57:99:1921,147,0
6    76063133    rs6913979    A    G    470.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.992;QD=33.57;ReadPosRankSum=0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FILIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237172    GT:AD:DP:GQ:PL    1/1:1,13:14:1.49:499,1,0
6    76124792    rs2808201    G    A    583.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FILIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237172    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:617,51,0
6    76333486    rs655471    G    A    515.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327284    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:548,42,0
6    76344431    rs17414086    C    T    167.94    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=19;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.225;QD=8.84;ReadPosRankSum=-1.648;SNPEFF_AMINO_ACID_CHANGE=T11M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_76344423_76344527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424947    GT:AD:DP:GQ:PL    0/1:12,7:19:99:198,0,404
6    76369054    rs507662    A    G    1237.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_AMINO_ACID_CHANGE=R202;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_76368978_76369123;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327284    GT:AD:DP:GQ:PL    1/1:0,35:35:96.29:1271,96,0
6    76372780    rs956653    T    G    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327284    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:69,0,32
6    76373274    rs2783351    C    T    278.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.959;QD=13.27;ReadPosRankSum=0.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436928    GT:AD:DP:GQ:PL    0/1:12,9:21:99:309,0,388
6    76376552    rs17414687    G    A    1153.80    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=2.055;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.293;QD=11.65;ReadPosRankSum=-0.452;SNPEFF_AMINO_ACID_CHANGE=A222;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_76376428_76376657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538088    GT:AD:DP:GQ:PL    0/1:51,48:99:99:1184,0,1433
6    76385330    rs17792195    G    C    70.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.19;MQ0=0;MQRankSum=1.001;QD=7.85;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327284    GT:AD:DP:GQ:PL    0/1:6,3:9:99:101,0,171
6    76385511    rs2842535    A    G    311.27    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.22;MQ0=0;MQRankSum=-0.498;QD=12.97;ReadPosRankSum=-0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327284    GT:AD:DP:GQ:PL    0/1:14,10:24:99:341,0,444
6    76385648    .    G    A    722.73    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DP=53;Dels=0.0;FS=2.371;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.557;QD=13.64;ReadPosRankSum=1.023;SNPEFF_AMINO_ACID_CHANGE=R349Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_76385576_76385770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538088    GT:AD:DP:GQ:PL    0/1:27,26:53:99:753,0,853
6    76387102    rs11752694    A    T    33.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327284    GT:AD:DP:GQ:PL    0/1:2,2:4:63.52:64,0,71
6    76405305    rs80096685    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370010    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    76412992    rs11754663    C    G    43.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370010    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:73,0,23
6    76421003    rs3765140    A    G    241.76    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=16;Dels=0.0;FS=5.825;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.694;QD=15.11;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370010    GT:AD:DP:GQ:PL    0/1:7,9:16:99:272,0,206
6    76425288    rs9250    A    G    1544.03    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=3.009;DB;DP=89;Dels=0.0;FS=11.869;HRun=0;HaplotypeScore=0.8321;MQ=59.22;MQ0=0;MQRankSum=0.573;QD=17.35;ReadPosRankSum=1.736;SNPEFF_AMINO_ACID_CHANGE=Y1099C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_76425101_76425620;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370010    GT:AD:DP:GQ:PL    0/1:36,53:89:99:1574,0,1136
6    76538403    rs1280052    G    A    346.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.807;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9053;MQ=58.89;MQ0=0;MQRankSum=2.381;QD=16.48;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    0/1:9,12:21:99:376,0,297
6    76554593    rs7760587    G    A    2724.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2757,202,0
6    76566734    rs3798439    T    G    444.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:478,36,0
6    76576527    rs6453845    G    T    503.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:537,39,0
6    76583113    rs9443195    T    A    141.06    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.63;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    0/1:3,5:8:99:171,0,102
6    76596728    rs2295936    C    T    472.05    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.989;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.659;QD=12.76;ReadPosRankSum=-0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    0/1:21,16:37:99:502,0,677
6    76599582    rs17192223    C    T    37.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.32;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    0/1:3,3:6:67.94:68,0,110
6    76604573    rs3798429    T    G    220.28    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.577;QD=8.16;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    0/1:17,10:27:99:250,0,563
6    76607983    rs720862    T    A    219.25    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.244;QD=18.27;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    0/1:5,7:12:99:249,0,165
6    76624741    rs12606    C    T    365.18    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.455;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.529;QD=16.6;ReadPosRankSum=0.112;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369975    GT:AD:DP:GQ:PL    0/1:7,15:22:99:395,0,202
6    76640550    rs9343332    A    G    368.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369950    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:402,33,0
6    76644437    rs2314089    C    T    200.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369950    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
6    76656978    rs3215818    AT    A    698.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=53.3309;IndelType=D;MQ=60.0;MQ0=0;QD=36.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369950    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:740,57,0
6    76720751    rs2251594    C    G    251.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369950    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
6    76782049    rs1320537    C    A    725.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369950    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:758,57,0
6    78171941    rs6297    C    T    775    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369947    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:808,60,0
6    78172260    rs6296    C    G    1216.92    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.878;DB;DP=98;Dels=0.0;FS=0.783;HRun=0;HaplotypeScore=0.6651;MQ=59.34;MQ0=0;MQRankSum=1.157;QD=12.42;ReadPosRankSum=-1.323;SNPEFF_AMINO_ACID_CHANGE=V287;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_78171948_78173490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369947    GT:AD:DP:GQ:PL    0/1:58,40:98:99:1247,0,1691
6    78172992    rs6298    G    A    1507.58    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.144;DB;DP=84;Dels=0.0;FS=3.065;HRun=0;HaplotypeScore=2.377;MQ=59.23;MQ0=0;MQRankSum=1.059;QD=17.95;ReadPosRankSum=0.202;SNPEFF_AMINO_ACID_CHANGE=S43;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_78171948_78173490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369947    GT:AD:DP:GQ:PL    0/1:34,49:84:99:1538,0,980
6    78400366    rs59031566    A    T    1888.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=32.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-321C1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442882    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1922,153,0
6    78400624    rs72896583    A    G    3164.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.813;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6808;MQ=59.48;MQ0=0;MQRankSum=0.106;QD=32.29;ReadPosRankSum=-1.555;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-321C1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442882    GT:AD:DP:GQ:PL    1/1:1,97:98:99:3197,211,0
6    78400751    rs514178    A    T    1763.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.195;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.52;MQ0=0;MQRankSum=1.195;QD=30.4;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-321C1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442882    GT:AD:DP:GQ:PL    1/1:1,57:58:99:1796,104,0
6    78400840    rs79839144    T    C    621.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-321C1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442882    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:654,51,0
6    78632770    rs4598029    C    G    1201.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,35:35:96.28:1235,96,0
6    78633079    rs7740644    A    G    846.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.03;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:879,66,0
6    79577644    rs9350789    A    C    68.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.01;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369940    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:98,0,30
6    79595097    rs6908105    A    G    850.37    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.532;DB;DP=69;Dels=0.0;FS=3.317;HRun=1;HaplotypeScore=0.0;MQ=57.6;MQ0=0;MQRankSum=-0.933;QD=12.32;ReadPosRankSum=1.39;SNPEFF_AMINO_ACID_CHANGE=A106;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_79595095_79595160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369940    GT:AD:DP:GQ:PL    0/1:37,32:69:99:880,0,1211
6    79595167    .    A    ACTTAT    1906.18    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.307;DP=62;FS=4.226;HRun=0;HaplotypeScore=303.8211;IndelType=I;MQ=56.91;MQ0=0;MQRankSum=-1.447;QD=30.74;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369940    GT:AD:DP:GQ:PL    0/1:40,22:62:99:1945,0,1881
6    79656562    rs2275291    A    T    386.76    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.479;DB;DP=39;Dels=0.0;FS=3.626;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=9.92;ReadPosRankSum=-0.06;SNPEFF_AMINO_ACID_CHANGE=A138;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_79656428_79656591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355098    GT:AD:DP:GQ:PL    0/1:24,15:39:99:417,0,745
6    79656570    rs2275290    G    A    369.65    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=37;Dels=0.0;FS=1.481;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.005;QD=9.99;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=L136;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_79656428_79656591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355098    GT:AD:DP:GQ:PL    0/1:22,15:37:99:400,0,777
6    79675701    rs9350797    A    G    2332.50    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.221;DB;DP=177;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6532;MQ=59.76;MQ0=0;MQRankSum=1.534;QD=13.18;ReadPosRankSum=1.322;SNPEFF_AMINO_ACID_CHANGE=L1093P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_79675662_79675773;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275034    GT:AD:DP:GQ:PL    0/1:92,85:177:99:2362,0,2834
6    79680592    .    C    T    499.83    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=3.632;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.258;QD=15.62;ReadPosRankSum=-0.456;SNPEFF_AMINO_ACID_CHANGE=R968Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_79680498_79680605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275034    GT:AD:DP:GQ:PL    0/1:14,17:32:99:530,0,334
6    79692751    rs11547228    G    A    658.22    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.706;DB;DP=92;Dels=0.0;FS=4.458;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=7.15;ReadPosRankSum=-0.16;SNPEFF_AMINO_ACID_CHANGE=T874I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_79692603_79692834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275034    GT:AD:DP:GQ:PL    0/1:63,29:92:99:688,0,2074
6    79695003    .    T    TA    154.23    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DP=28;FS=3.882;HRun=11;HaplotypeScore=81.5236;IndelType=I;MQ=59.17;MQ0=0;MQRankSum=-0.467;QD=5.51;ReadPosRankSum=2.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275034    GT:AD:DP:GQ:PL    0/1:18,8:28:99:193,0,218
6    79695324    rs1890230    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275034    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
6    79708000    rs7747479    A    C    2396.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.565;MQ=59.08;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=V663G;SNPEFF_CODON_CHANGE=gTt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_79707971_79708108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275034    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2430,187,0
6    79724740    rs68067309    C    A    76.80    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.758;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=4.8;ReadPosRankSum=1.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275034    GT:AD:DP:GQ:PL    0/1:12,4:16:99:107,0,451
6    79912189    rs2236543    A    G    423.94    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.218;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.13;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275036    GT:AD:DP:GQ:PL    0/1:13,17:30:99:454,0,441
6    79913379    rs67281239    GA    G    285.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DB;DP=25;FS=0.0;HRun=14;HaplotypeScore=86.4919;IndelType=D;MQ=60.86;MQ0=0;MQRankSum=1.004;QD=11.41;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275036    GT:AD:DP:GQ:PL    1/1:5,19:25:27.70:327,28,0
6    79918309    rs9341761    G    A    3657.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275036    GT:AD:DP:GQ:PL    1/1:0,123:123:99:3658,301,0
6    79943990    rs72893792    G    A    82.07    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=16.41;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275036    GT:AD:DP:GQ:PL    0/1:1,4:5:21.40:112,0,21
6    79944096    rs5877648    C    CAG    982.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=61.2979;IndelType=I;MQ=55.5;MQ0=0;QD=46.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275036    GT:AD:DP:GQ:PL    1/1:1,20:21:60.21:1024,60,0
6    79944355    rs9361504    T    G    1514.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.48;MQ0=0;QD=32.93;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_79944263_79944406;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275036    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1548,117,0
6    80196848    rs1875845    C    T    1726.86    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.871;DB;DP=110;Dels=0.0;FS=0.745;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.565;QD=15.7;ReadPosRankSum=0.141;SNPEFF_AMINO_ACID_CHANGE=G656D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_80194708_80197583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369846    GT:AD:DP:GQ:PL    0/1:54,56:110:99:1757,0,1678
6    80201120    rs72899942    A    G    34.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.0;QD=8.69;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369846    GT:AD:DP:GQ:PL    0/1:2,2:4:64.55:65,0,65
6    80203200    rs34235702    AGAT    A    207.68    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=69.3104;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=0.466;QD=18.88;ReadPosRankSum=2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369846    GT:AD:DP:GQ:PL    0/1:6,5:11:99:247,0,404
6    80203253    rs9443675    G    A    418.61    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.071;DB;DP=24;Dels=0.0;FS=3.388;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.232;QD=17.44;ReadPosRankSum=-0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369846    GT:AD:DP:GQ:PL    0/1:11,13:24:99:449,0,365
6    80222804    rs11757993    G    C    196.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=21.79;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369846    GT:AD:DP:GQ:PL    0/1:3,6:9:91.51:226,0,92
6    80228535    rs34068461    T    G    2445.52    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.244;DB;DP=149;Dels=0.0;FS=5.044;HRun=0;HaplotypeScore=2.2418;MQ=59.38;MQ0=0;MQRankSum=1.284;QD=16.41;ReadPosRankSum=0.243;SNPEFF_AMINO_ACID_CHANGE=D26A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_80228422_80228802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369846    GT:AD:DP:GQ:PL    0/1:69,80:149:99:2476,0,2194
6    80228541    rs2655655    A    G    5138.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0304;MQ=59.22;MQ0=0;QD=34.72;SNPEFF_AMINO_ACID_CHANGE=L24S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_80228422_80228802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369846    GT:AD:DP:GQ:PL    1/1:0,148:148:99:5139,382,0
6    80228673    rs2803195    T    C    2666.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;QD=30.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467898    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2700,232,0
6    80382863    rs1883877    G    A    1157.47    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=89;Dels=0.0;FS=4.815;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.125;QD=13.01;ReadPosRankSum=-1.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369838    GT:AD:DP:GQ:PL    0/1:45,44:89:99:1187,0,1360
6    80382916    rs1883878    G    T    1604.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369838    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1637,123,0
6    80631282    rs45466000    C    T    253.38    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.371;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.729;QD=10.56;ReadPosRankSum=-1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369816    GT:AD:DP:GQ:PL    0/1:15,9:24:99:283,0,490
6    80631539    rs700483    T    A    424.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369816    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:457,36,0
6    80657086    rs62407622    C    G    76.61    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.32;ReadPosRankSum=0.731;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_80656897_80657297;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELOVL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369816    GT:AD:DP:GQ:PL    0/1:1,4:5:24.94:107,0,25
6    80715838    rs240226    T    G    202.53    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=58.2;MQ0=0;MQRankSum=0.377;QD=15.58;ReadPosRankSum=2.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230510    GT:AD:DP:GQ:PL    0/1:6,7:13:99:233,0,212
6    80720487    rs111611266    G    GTA    355.73    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=4.468;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=245.4456;IndelType=I;MQ=57.96;MQ0=0;MQRankSum=0.0;QD=12.27;ReadPosRankSum=1.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502580    GT:AD:DP:GQ:PL    0/1:15,14:29:99:395,0,650
6    80720733    rs151587    G    A    444.77    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.62;DB;DP=31;Dels=0.0;FS=2.071;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.54;QD=14.35;ReadPosRankSum=1.341;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502580    GT:AD:DP:GQ:PL    0/1:13,18:31:99:475,0,442
6    80720742    rs239556    A    T    318.67    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.543;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.787;QD=13.86;ReadPosRankSum=0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502580    GT:AD:DP:GQ:PL    0/1:9,14:23:99:349,0,304
6    80721045    rs239558    A    G    336.03    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.021;QD=14.61;ReadPosRankSum=2.148;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502580    GT:AD:DP:GQ:PL    0/1:12,11:23:99:366,0,357
6    80722857    rs239562    C    T    109.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=18.18;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430061    GT:AD:DP:GQ:PL    0/1:2,4:6:60.68:139,0,61
6    80723198    rs239563    T    C    511.02    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.144;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.422;QD=15.97;ReadPosRankSum=-1.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430061    GT:AD:DP:GQ:PL    0/1:13,19:32:99:541,0,440
6    80723229    rs17174951    C    A    256.71    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.914;QD=15.1;ReadPosRankSum=1.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430061    GT:AD:DP:GQ:PL    0/1:9,8:17:99:287,0,234
6    80724312    rs239566    A    G    803.48    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.234;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.68;MQ0=0;MQRankSum=0.497;QD=11.01;ReadPosRankSum=-0.965;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430061    GT:AD:DP:GQ:PL    0/1:42,31:73:99:833,0,1349
6    80724462    rs239567    C    T    63.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.05;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430061    GT:AD:DP:GQ:PL    0/1:6,3:9:93.41:93,0,220
6    80724544    rs239568    T    A    36.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430061    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
6    80732242    rs17175251    G    A    296.26    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.728;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.18;QD=10.97;ReadPosRankSum=0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230510    GT:AD:DP:GQ:PL    0/1:17,10:27:99:326,0,609
6    80741243    rs1801465    A    T    634.45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.618;DB;DP=63;Dels=0.0;FS=16.924;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.84;QD=10.07;ReadPosRankSum=0.326;SNPEFF_AMINO_ACID_CHANGE=I526;SNPEFF_CODON_CHANGE=atA/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_80741184_80741276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230510    GT:AD:DP:GQ:PL    0/1:36,27:63:99:664,0,1150
6    80741328    rs239584    G    A    354.62    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=1.135;QD=16.12;ReadPosRankSum=0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515751    GT:AD:DP:GQ:PL    0/1:9,13:22:99:385,0,303
6    80741418    rs239585    C    T    135.09    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.89;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515751    GT:AD:DP:GQ:PL    0/1:3,5:8:90.44:165,0,90
6    80749972    rs1801460    A    C    1065.02    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=62;Dels=0.0;FS=5.9;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.411;QD=17.18;ReadPosRankSum=-0.943;SNPEFF_AMINO_ACID_CHANGE=P788;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_80749913_80749997;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000230510    GT:AD:DP:GQ:PL    0/1:24,37:62:99:1095,0,744
6    80750290    rs608962    C    T    544.23    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=0.102;QD=13.61;ReadPosRankSum=-0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504590    GT:AD:DP:GQ:PL    0/1:21,19:40:99:574,0,653
6    80751780    rs652752    G    A    749.13    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.008;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.34;MQ0=0;MQRankSum=0.018;QD=21.4;ReadPosRankSum=-1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504590    GT:AD:DP:GQ:PL    0/1:11,24:35:99:779,0,355
6    80751942    rs17254634    G    A    783.85    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.68;DB;DP=50;Dels=0.0;FS=2.133;HRun=1;HaplotypeScore=0.6651;MQ=59.54;MQ0=0;MQRankSum=-0.146;QD=15.68;ReadPosRankSum=-0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504590    GT:AD:DP:GQ:PL    0/1:24,26:50:99:814,0,774
6    80774236    rs7771228    C    T    1584.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.23;MQ0=1;QD=31.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1617,123,0
6    80774410    rs62406016    C    T    288.84    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.13;MQ0=0;MQRankSum=-1.354;QD=9.96;ReadPosRankSum=1.078;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    0/1:19,10:29:99:319,0,572
6    80775330    rs3812152    G    A    1468.96    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.493;DB;DP=95;Dels=0.0;FS=0.779;HRun=1;HaplotypeScore=0.9665;MQ=55.38;MQ0=0;MQRankSum=2.501;QD=15.46;ReadPosRankSum=0.965;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    0/1:50,45:95:99:1499,0,1563
6    80775487    rs4642425    T    A    1308.95    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.891;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=42.77;MQ0=2;MQRankSum=0.483;QD=10.91;ReadPosRankSum=0.499;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    0/1:61,59:120:99:1339,0,1503
6    80775636    rs2149082    A    G    1510.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.26;MQ0=0;QD=32.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1543,120,0
6    80777467    rs3828761    C    T    816.57    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=65;Dels=0.0;FS=12.028;HRun=0;HaplotypeScore=0.6651;MQ=59.71;MQ0=0;MQRankSum=0.02;QD=12.56;ReadPosRankSum=-0.244;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    0/1:36,29:65:99:847,0,1152
6    80777608    rs3967160    G    A    1710.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1744,129,0
6    80777633    rs75688222    G    A    596.31    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=2.83;DB;DP=50;Dels=0.0;FS=2.654;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=11.93;ReadPosRankSum=0.314;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    0/1:29,21:50:99:626,0,913
6    80778853    rs6923330    G    C    685.33    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=41;Dels=0.0;FS=1.286;HRun=0;HaplotypeScore=0.0;MQ=57.98;MQ0=0;MQRankSum=1.32;QD=16.72;ReadPosRankSum=-0.954;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-296E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401578    GT:AD:DP:GQ:PL    0/1:19,22:41:99:715,0,626
6    80910571    rs9688535    G    A    317.04    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.296;QD=15.85;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320393    GT:AD:DP:GQ:PL    0/1:7,13:20:99:347,0,217
6    80910622    .    CT    C    251.92    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=3.301;DP=45;FS=1.448;HRun=12;HaplotypeScore=220.5232;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=0.042;QD=5.6;ReadPosRankSum=1.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320393    GT:AD:DP:GQ:PL    0/1:24,19:45:99:291,0,475
6    80912746    rs3828753    C    T    219.90    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.927;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.448;QD=14.66;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320393    GT:AD:DP:GQ:PL    0/1:7,8:15:99:250,0,251
6    81053217    rs2322763    G    T    117.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320393    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
6    81053642    rs926733    G    A    544.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541767    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:578,42,0
6    82882166    rs144587676    A    G    857.29    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.863;QD=15.31;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=I1086;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_82882097_82882229;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBTK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503631    GT:AD:DP:GQ:PL    0/1:26,30:56:99:887,0,882
6    82910247    rs4706938    C    G    207.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306270    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:240,21,0
6    82912153    rs7771978    T    G    1878.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306270    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1911,144,0
6    82924645    rs6912968    A    G    661.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IBTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306270    GT:AD:DP:GQ:PL    1/1:0,19:19:54.14:695,54,0
6    83075914    rs700494    G    A    403.85    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.167;DB;DP=32;Dels=0.0;FS=12.407;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.302;QD=12.62;ReadPosRankSum=-0.711;SNPEFF_AMINO_ACID_CHANGE=T412;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_83074340_83080545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPBG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369750    GT:AD:DP:GQ:PL    0/1:15,17:32:99:434,0,430
6    83602583    rs4706975    C    T    336.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2CBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430071    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:369,27,0
6    83666936    rs293531    T    C    221.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=15.8;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2CBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369747    GT:AD:DP:GQ:PL    0/1:7,7:14:99:251,0,243
6    83666943    rs293532    G    T    199.25    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.299;QD=11.72;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2CBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369747    GT:AD:DP:GQ:PL    0/1:9,8:17:99:229,0,309
6    83733785    rs4235816    C    T    229.24    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=26;Dels=0.0;FS=1.752;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=8.82;ReadPosRankSum=-0.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2CBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369747    GT:AD:DP:GQ:PL    0/1:16,10:26:99:259,0,467
6    83754094    rs4455637    T    C    1144.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2CBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369747    GT:AD:DP:GQ:PL    1/1:0,30:30:87.26:1177,87,0
6    83754481    rs2027282    T    C    198.67    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.732;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.927;QD=11.69;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2CBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369747    GT:AD:DP:GQ:PL    0/1:10,7:17:99:229,0,365
6    83763980    rs180787930    C    T    489.72    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.075;DB;DP=34;Dels=0.0;FS=2.127;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.243;QD=14.4;ReadPosRankSum=0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2CBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369747    GT:AD:DP:GQ:PL    0/1:19,15:34:99:520,0,651
6    83775201    rs6915334    C    G    30.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.2;MQ0=0;MQRankSum=1.026;QD=6.18;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2CBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369745    GT:AD:DP:GQ:PL    0/1:2,3:5:60.89:61,0,69
6    83818965    rs1925783    A    G    41.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.81;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237163    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
6    83822985    rs1925782    G    A    402.25    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.354;DB;DP=23;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.123;QD=17.49;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237163    GT:AD:DP:GQ:PL    0/1:11,12:23:99:432,0,291
6    83828724    rs2148010    G    A    789.91    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.399;DB;DP=44;Dels=0.0;FS=2.227;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.117;QD=17.95;ReadPosRankSum=1.316;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237163    GT:AD:DP:GQ:PL    0/1:21,23:44:99:820,0,662
6    83835175    rs583679    G    T    780.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.267;DB;DP=42;Dels=0.0;FS=2.29;HRun=2;HaplotypeScore=1.9996;MQ=60.0;MQ0=0;MQRankSum=-1.267;QD=18.59;ReadPosRankSum=1.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536812    GT:AD:DP:GQ:PL    0/1:14,28:42:99:811,0,445
6    83841771    rs681512    C    G    55.43    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.0;QD=4.62;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237163    GT:AD:DP:GQ:PL    0/1:9,3:12:85.43:85,0,301
6    83842055    rs2307912    C    CTCT    1017.83    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.321;DB;DP=47;FS=6.069;HRun=0;HaplotypeScore=162.1343;IndelType=I;MQ=53.52;MQ0=0;MQRankSum=-3.631;QD=21.66;ReadPosRankSum=1.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237163    GT:AD:DP:GQ:PL    0/1:29,18:47:99:1057,0,1084
6    83842101    rs71820880    CACAA    C    362.89    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.614;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=142.2891;IndelType=D;MQ=55.2;MQ0=0;MQRankSum=-0.157;QD=15.12;ReadPosRankSum=-0.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237163    GT:AD:DP:GQ:PL    0/1:16,8:24:99:402,0,1036
6    83863583    rs647231    G    A    397.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.609;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.332;QD=13.25;ReadPosRankSum=0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237163    GT:AD:DP:GQ:PL    0/1:15,15:30:99:427,0,425
6    83877496    rs495944    T    C    110.47    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.27;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PGM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283977    GT:AD:DP:GQ:PL    0/1:4,5:9:99:140,0,141
6    83880167    rs473267    C    T    1117.64    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.154;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.015;QD=14.33;ReadPosRankSum=0.205;SNPEFF_AMINO_ACID_CHANGE=D385N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_83880024_83880197;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PGM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283977    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1148,0,1157
6    83880274    rs474213    C    T    476.50    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=4.07;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.556;QD=19.85;ReadPosRankSum=1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237163    GT:AD:DP:GQ:PL    0/1:10,14:24:99:506,0,281
6    83881740    rs542948    T    C    590.84    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.184;DB;DP=50;Dels=0.0;FS=1.147;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.786;QD=11.82;ReadPosRankSum=0.59;SNPEFF_AMINO_ACID_CHANGE=E346;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_83881656_83881778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PGM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283977    GT:AD:DP:GQ:PL    0/1:29,21:50:99:621,0,967
6    83892687    rs62419258    C    A    34.54    QDFilter2    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.386;DB;DP=35;Dels=0.0;FS=31.46;HRun=2;HaplotypeScore=11.7205;MQ=50.75;MQ0=0;MQRankSum=-1.967;QD=0.99;ReadPosRankSum=0.084;SNPEFF_AMINO_ACID_CHANGE=L156F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_83892564_83892697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PGM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000512866    GT:AD:DP:GQ:PL    0/1:14,21:35:64.53:65,0,308
6    83898300    rs113913828    GT    G    290.35    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=4.721;DB;DP=42;FS=1.785;HRun=11;HaplotypeScore=110.5822;IndelType=D;MQ=60.07;MQ0=0;MQRankSum=-0.278;QD=6.91;ReadPosRankSum=-0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PGM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503094    GT:AD:DP:GQ:PL    0/1:23,19:42:99:329,0,522
6    84055783    rs12215595    A    G    83.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.531;QD=5.58;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369705    GT:AD:DP:GQ:PL    0/1:10,5:15:99:114,0,378
6    84108065    rs4706990    A    T    274.15    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=26;Dels=0.0;FS=1.974;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=10.54;ReadPosRankSum=-0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369705    GT:AD:DP:GQ:PL    0/1:14,12:26:99:304,0,454
6    84117415    rs149255830    T    G    358.19    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=3.369;DB;DP=33;Dels=0.0;FS=2.509;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.184;QD=10.85;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369705    GT:AD:DP:GQ:PL    0/1:19,14:33:99:388,0,690
6    84233831    rs504593    G    A    1484.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=R224Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_84233141_84235423;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369700    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1518,114,0
6    84234144    rs3812141    C    T    1193.30    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.72;DB;DP=83;Dels=0.0;FS=0.836;HRun=0;HaplotypeScore=1.7219;MQ=60.0;MQ0=0;MQRankSum=-0.73;QD=14.38;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=S328;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_84233141_84235423;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369700    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1223,0,1324
6    84265708    rs633554    G    T    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195649    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    84266041    rs4706182    A    G    115.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=48.59;MQ0=0;QD=12.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195649    GT:AD:DP:GQ:PL    1/1:0,9:9:12.04:148,12,0
6    84284664    rs6941004    G    C    1047.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.29;MQ0=0;QD=32.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519133    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1080,81,0
6    84284880    rs2022269    T    A    932.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519133    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:965,75,0
6    84290137    rs5877853    TAAAG    T    3526.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.513;DB;DP=86;FS=0.0;HRun=0;HaplotypeScore=640.0161;IndelType=D;MQ=52.4;MQ0=0;MQRankSum=-0.197;QD=40.53;ReadPosRankSum=-0.504;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195649    GT:AD:DP:GQ:PL    1/1:12,73:86:99:3526,233,0
6    84290138    .    AAAG    A    2805.40    PASS    AC=2;AF=1.00;AN=2;DP=86;FS=0.0;HRun=0;HaplotypeScore=673.1141;IndelType=D;MQ=52.4;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195649    GT:AD:DP:GQ:PL    1/1:82,5:86:99:2847,237,0
6    84292139    rs1033653    T    A    1024.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=39.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195649    GT:AD:DP:GQ:PL    1/1:0,26:26:78.25:1058,78,0
6    84300997    rs2273363    A    G    1532.86    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.035;DB;DP=132;Dels=0.0;FS=0.67;HRun=0;HaplotypeScore=0.7887;MQ=59.83;MQ0=0;MQRankSum=1.827;QD=11.61;ReadPosRankSum=-1.005;SNPEFF_AMINO_ACID_CHANGE=S462;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_84300930_84301013;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521931    GT:AD:DP:GQ:PL    0/1:71,60:132:99:1563,0,2074
6    84303342    rs1033655    T    C    801.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=36.42;SNPEFF_AMINO_ACID_CHANGE=P200;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_84303312_84303439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447888    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:834,63,0
6    84317533    rs7752421    A    T    820.04    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.025;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.19;MQ0=0;MQRankSum=2.602;QD=14.39;ReadPosRankSum=0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195649    GT:AD:DP:GQ:PL    0/1:26,30:57:99:850,0,767
6    84324787    rs3798870    A    G    86.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195649    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
6    84366385    rs71549556    C    CAAG    4095.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=179.4789;IndelType=I;MQ=56.02;MQ0=0;QD=63.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369690    GT:AD:DP:GQ:PL    1/1:5,56:64:99:4095,184,0
6    84375033    rs217303    G    A    849.79    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=5.914;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9053;MQ=60.0;MQ0=0;MQRankSum=0.722;QD=13.93;ReadPosRankSum=1.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519825    GT:AD:DP:GQ:PL    0/1:35,26:61:99:880,0,1066
6    84375103    rs13192685    C    A    1851.02    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.606;DB;DP=122;Dels=0.0;FS=2.206;HRun=0;HaplotypeScore=1.6988;MQ=59.44;MQ0=0;MQRankSum=0.026;QD=15.05;ReadPosRankSum=-1.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519825    GT:AD:DP:GQ:PL    0/1:62,60:122:99:1881,0,2007
6    84375377    rs217302    G    A    1011.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000195649    GT:AD:DP:GQ:PL    1/1:0,30:30:84.25:1045,84,0
6    84649994    rs61756914    G    T    267.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.31;DB;DP=21;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.746;QD=12.73;ReadPosRankSum=-2.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369681    GT:AD:DP:GQ:PL    0/1:12,9:21:99:297,0,440
6    84835197    rs74536587    C    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1009;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257766    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    84863054    rs75856045    T    C    75.92    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.18;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1009;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257766    GT:AD:DP:GQ:PL    0/1:1,4:5:28:106,0,28
6    84911336    rs2274092    C    T    107.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.45;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1009;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257766    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,144
6    84935866    rs9449851    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1009;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257766    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    85448103    rs761391    C    T    1459.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369663    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1492,114,0
6    85453782    rs2015519    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369663    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    85466286    rs215939    A    C    169.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369663    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
6    85472129    rs1883873    C    T    425.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369663    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:459,36,0
6    85473758    rs172562    C    T    152.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=19.11;SNPEFF_AMINO_ACID_CHANGE=G48R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_85473608_85474237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369663    GT:AD:DP:GQ:PL    1/1:1,7:8:15.03:186,15,0
6    86180926    rs10944129    A    G    504.58    PASS    AB=0.24;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.859;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.604;QD=20.18;ReadPosRankSum=0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257770    GT:AD:DP:GQ:PL    0/1:6,19:25:99:535,0,189
6    86195298    rs9450282    A    G    159.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257770    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
6    86196990    rs3812139    C    G    325.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.128;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.837;QD=13.55;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257770    GT:AD:DP:GQ:PL    0/1:12,12:24:99:355,0,427
6    86199233    rs2229523    A    G    911.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_AMINO_ACID_CHANGE=T152A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_86199212_86199317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369647    GT:AD:DP:GQ:PL    1/1:0,33:33:75.22:944,75,0
6    86199329    rs9450284    G    C    387.58    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.696;DB;DP=23;Dels=0.0;FS=8.089;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.715;QD=16.85;ReadPosRankSum=-1.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257770    GT:AD:DP:GQ:PL    0/1:6,17:23:99:418,0,187
6    86224053    rs6454472    T    G    671.82    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.291;DB;DP=37;Dels=0.0;FS=7.068;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.598;QD=18.16;ReadPosRankSum=0.353;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503608    GT:AD:DP:GQ:PL    0/1:16,21:37:99:702,0,553
6    86240147    rs4640862    G    A    37.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514801    GT:AD:DP:GQ:PL    0/1:2,2:4:53.42:68,0,53
6    86246709    rs12193777    C    A    460.24    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.501;DB;DP=32;Dels=0.0;FS=2.071;HRun=4;HaplotypeScore=9.9981;MQ=60.34;MQ0=0;MQRankSum=-0.26;QD=14.38;ReadPosRankSum=-1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314673    GT:AD:DP:GQ:PL    0/1:14,18:32:99:490,0,441
6    86246716    rs71551479    T    TA    238.14    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.0;DB;DP=30;FS=0.0;HRun=8;HaplotypeScore=124.457;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=-1.023;QD=7.94;ReadPosRankSum=2.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314673    GT:AD:DP:GQ:PL    0/1:20,10:30:99:277,0,288
6    86248460    rs9294337    T    C    258.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.053;QD=16.18;ReadPosRankSum=1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314673    GT:AD:DP:GQ:PL    0/1:8,8:16:99:289,0,239
6    86283837    rs71551483    C    CA    434.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.957;DB;DP=23;FS=0.0;HRun=12;HaplotypeScore=82.1565;IndelType=I;MQ=59.35;MQ0=0;MQRankSum=1.339;QD=18.88;ReadPosRankSum=1.339;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SYNCRIP;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:4,17:23:15.66:476,16,0
6    86350394    rs4348284    C    T    55.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.358;QD=7.88;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SYNCRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355238    GT:AD:DP:GQ:PL    0/1:4,3:7:48.99:85,0,49
6    86387888    rs1059307    G    T    479.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.199;DB;DP=36;Dels=0.0;FS=10.583;HRun=1;HaplotypeScore=5.0175;MQ=59.48;MQ0=0;MQRankSum=-0.462;QD=13.32;ReadPosRankSum=-0.557;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=non_coding;SNPEFF_GENE_NAME=SNHG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369605    GT:AD:DP:GQ:PL    0/1:20,16:36:99:510,0,626
6    87183398    rs4707286    C    T    323.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.92;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL391417.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408174    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
6    87925826    rs71836482    GACAC    G    502.59    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=394.4706;IndelType=D;MQ=52.89;MQ0=0;MQRankSum=-0.812;QD=7.73;ReadPosRankSum=1.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF292;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339907    GT:AD:DP:GQ:PL    0/1:43,11:64:77.33:542,0,77
6    88047059    rs242278    C    T    92.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf162;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229570    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:124,9,0
6    88107770    rs926946    C    T    246.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.2;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_88106840_88108095;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369570    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
6    88108048    rs67076383    AGAT    A    2629.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=0;HaplotypeScore=255.0532;IndelType=D;MQ=55.4;MQ0=0;QD=46.13;SNPEFF_AMINO_ACID_CHANGE=KM39K;SNPEFF_CODON_CHANGE=aagatg/aag;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_6_88106840_88108095;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf164;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369570    GT:AD:DP:GQ:PL    1/1:4,53:57:99:2671,160,0
6    88317292    rs67540980    CA    C    176.45    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=40.4532;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=11.03;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257789    GT:AD:DP:GQ:PL    0/1:6,10:16:99:215,0,121
6    88366708    rs2307373    C    T    779.25    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=64;Dels=0.0;FS=4.119;HRun=1;HaplotypeScore=1.748;MQ=60.0;MQ0=0;MQRankSum=-0.339;QD=12.18;ReadPosRankSum=0.946;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257789    GT:AD:DP:GQ:PL    0/1:35,29:64:99:809,0,887
6    89323809    rs148398203    A    C    121.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.22;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNGTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265607    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:151,0,25
6    89388146    .    GA    G    510.25    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=4.114;DP=68;FS=5.657;HRun=8;HaplotypeScore=172.5706;IndelType=D;MQ=60.32;MQ0=0;MQRankSum=0.455;QD=7.5;ReadPosRankSum=-0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNGTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265607    GT:AD:DP:GQ:PL    0/1:43,25:68:99:549,0,1012
6    89769475    rs12528320    C    G    1041.94    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.084;DB;DP=77;Dels=0.0;FS=5.309;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.702;QD=13.53;ReadPosRankSum=-0.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411069    GT:AD:DP:GQ:PL    0/1:39,37:77:99:1072,0,1320
6    89769624    rs9294419    T    C    1052.35    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.113;DB;DP=67;Dels=0.0;FS=1.276;HRun=0;HaplotypeScore=0.9998;MQ=59.66;MQ0=0;MQRankSum=0.057;QD=15.71;ReadPosRankSum=-1.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411069    GT:AD:DP:GQ:PL    0/1:30,37:67:99:1082,0,1033
6    89790559    rs10571722    CTTCA    C    406.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=44.9722;IndelType=D;MQ=58.48;MQ0=0;QD=45.12;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354922    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:448,24,0
6    89814711    rs9362618    T    G    89.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475068    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
6    89814772    rs35869140    CA    C    538.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=7;HaplotypeScore=110.5174;IndelType=D;MQ=60.57;MQ0=0;QD=28.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475068    GT:AD:DP:GQ:PL    1/1:0,19:19:57.13:580,57,0
6    89814830    rs7753709    A    G    1740.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.21;MQ0=0;QD=34.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475068    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1774,129,0
6    89816819    rs72915636    G    A    1364.55    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=69;Dels=0.0;FS=8.246;HRun=0;HaplotypeScore=2.8156;MQ=60.0;MQ0=0;MQRankSum=-2.502;QD=19.78;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452027    GT:AD:DP:GQ:PL    0/1:27,42:69:99:1395,0,907
6    89817221    rs9353648    T    C    74.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452027    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
6    89862725    rs6937095    T    C    522.19    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.141;QD=23.74;ReadPosRankSum=-2.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PM20D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275072    GT:AD:DP:GQ:PL    0/1:7,15:22:99:552,0,227
6    89888744    rs1796743    C    T    696.82    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=3.158;DB;DP=48;Dels=0.0;FS=3.83;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=14.52;ReadPosRankSum=-0.929;SNPEFF_AMINO_ACID_CHANGE=A308;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_89888318_89888782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369451    GT:AD:DP:GQ:PL    0/1:23,25:48:99:727,0,672
6    89891582    rs404943    T    C    467.31    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.621;DB;DP=40;Dels=0.0;FS=2.889;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.339;QD=11.68;ReadPosRankSum=-1.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369451    GT:AD:DP:GQ:PL    0/1:24,16:40:99:497,0,832
6    89894968    rs407206    G    A    422.80    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.01;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.387;QD=7.69;ReadPosRankSum=-0.981;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369451    GT:AD:DP:GQ:PL    0/1:38,17:55:99:453,0,1212
6    89895202    rs406462    G    A    488.21    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=38;Dels=0.0;FS=5.411;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.453;QD=12.85;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369451    GT:AD:DP:GQ:PL    0/1:20,18:38:99:518,0,709
6    89895207    rs364936    G    A    437.55    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.431;DB;DP=34;Dels=0.0;FS=1.532;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.397;QD=12.87;ReadPosRankSum=1.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369451    GT:AD:DP:GQ:PL    0/1:18,16:34:99:468,0,634
6    89907873    rs422751    G    A    8261.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6827;MQ=59.91;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=D129;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_89907739_89907962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435811    GT:AD:DP:GQ:PL    1/1:0,247:248:99:8261,605,0
6    89910685    rs76175729    C    CTG    376.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=26.0719;IndelType=I;MQ=62.36;MQ0=0;QD=41.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481493    GT:AD:DP:GQ:PL    1/1:0,8:9:24.08:419,24,0
6    89913108    rs4590241    C    G    284.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=27;Dels=0.0;FS=1.51;HRun=2;HaplotypeScore=0.0;MQ=57.56;MQ0=0;MQRankSum=-0.708;QD=10.53;ReadPosRankSum=0.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481493    GT:AD:DP:GQ:PL    0/1:15,12:27:99:314,0,487
6    89913112    rs4457139    G    A    318.62    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=0.322;QD=11.38;ReadPosRankSum=0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481493    GT:AD:DP:GQ:PL    0/1:15,13:28:99:349,0,494
6    89913209    rs4590242    C    T    189.35    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.634;QD=8.61;ReadPosRankSum=0.775;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000436331    GT:AD:DP:GQ:PL    0/1:15,7:22:99:219,0,466
6    89913218    rs4445034    T    A    127.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.604;DB;DP=21;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.634;QD=6.08;ReadPosRankSum=1.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481493    GT:AD:DP:GQ:PL    0/1:14,7:21:99:158,0,469
6    89967855    rs282128    C    T    42.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=8.44;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402938    GT:AD:DP:GQ:PL    0/1:2,3:5:26.22:72,0,26
6    89974063    rs723041    T    C    379.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.8997;MQ=58.05;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402938    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:413,33,0
6    89975245    rs2273507    G    C    1297.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402938    GT:AD:DP:GQ:PL    1/1:0,36:36:96.32:1330,96,0
6    89975569    rs6454746    T    A    610    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.498;DB;DP=43;Dels=0.0;FS=3.107;HRun=0;HaplotypeScore=0.0;MQ=55.67;MQ0=0;MQRankSum=2.103;QD=14.19;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402938    GT:AD:DP:GQ:PL    0/1:22,21:43:99:640,0,766
6    89977322    rs77624586    C    CT    2008.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=1;HaplotypeScore=96.6119;IndelType=I;MQ=61.82;MQ0=0;QD=42.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402938    GT:AD:DP:GQ:PL    1/1:1,46:47:99:2050,138,0
6    89977906    rs4707535    T    C    191.83    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=23.98;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402938    GT:AD:DP:GQ:PL    0/1:2,6:8:57.69:222,0,58
6    90009311    rs1570932    T    C    212.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402938    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
6    90315789    rs3748085    A    G    217.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.766;QD=14.5;ReadPosRankSum=-1.355;SNPEFF_AMINO_ACID_CHANGE=I128V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90315726_90315824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339746    GT:AD:DP:GQ:PL    0/1:6,9:15:99:247,0,203
6    90323624    rs1179906    T    C    1057.83    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.134;DB;DP=81;Dels=0.0;FS=1.048;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.402;QD=13.06;ReadPosRankSum=0.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465722    GT:AD:DP:GQ:PL    0/1:43,38:81:99:1088,0,1278
6    90326471    rs11965767    C    T    230.93    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.541;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.17;MQ0=0;MQRankSum=1.328;QD=8.25;ReadPosRankSum=-1.771;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465722    GT:AD:DP:GQ:PL    0/1:19,9:28:99:261,0,620
6    90327873    rs6909915    G    A    280.64    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=55.97;MQ0=0;MQRankSum=-0.694;QD=21.59;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=V305;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90327673_90328129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000485637    GT:AD:DP:GQ:PL    0/1:4,9:13:76.03:311,0,76
6    90333058    rs10944455    T    A    231.67    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=17;Dels=0.0;FS=3.274;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=13.63;ReadPosRankSum=1.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485637    GT:AD:DP:GQ:PL    0/1:9,8:17:99:262,0,285
6    90333599    rs17292811    A    G    1159.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=24.67;SNPEFF_AMINO_ACID_CHANGE=A288;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90333591_90333776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520793    GT:AD:DP:GQ:PL    1/1:0,47:47:93.26:1193,93,0
6    90334101    rs4487551    T    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520839    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
6    90337633    rs13214731    C    T    77.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.43;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518150    GT:AD:DP:GQ:PL    0/1:2,3:5:53.58:107,0,54
6    90338728    rs74437492    A    G    535.21    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.925;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=-0.46;QD=17.26;ReadPosRankSum=2.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518150    GT:AD:DP:GQ:PL    0/1:14,17:31:99:565,0,415
6    90340276    rs3210511    G    A    703.13    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.664;DB;DP=52;Dels=0.0;FS=6.061;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.2;QD=13.52;ReadPosRankSum=-0.751;SNPEFF_AMINO_ACID_CHANGE=S515;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90340152_90341219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520793    GT:AD:DP:GQ:PL    0/1:29,23:52:99:733,0,884
6    90340446    rs61739327    C    T    629.18    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=66;Dels=0.0;FS=3.063;HRun=0;HaplotypeScore=0.5784;MQ=57.8;MQ0=0;MQRankSum=-0.22;QD=9.53;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=P572L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90340152_90341219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000520793    GT:AD:DP:GQ:PL    0/1:39,27:66:99:659,0,1136
6    90360346    rs7768654    G    A    1153.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1186,87,0
6    90360406    rs56396054    C    T    713.24    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=53;Dels=0.0;FS=1.576;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.845;QD=13.46;ReadPosRankSum=-0.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:25,28:53:99:743,0,807
6    90360757    rs9359858    A    G    160.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
6    90361811    rs761729    G    A    906.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:939,72,0
6    90364244    rs879718    C    A    126.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
6    90366236    rs2273241    G    A    295.38    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=22.72;ReadPosRankSum=1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:3,10:13:67.25:325,0,67
6    90366329    rs35227833    CT    C    215.47    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=0.11;DB;DP=53;FS=2.649;HRun=17;HaplotypeScore=325.6927;IndelType=D;MQ=56.07;MQ0=0;MQRankSum=-1.208;QD=4.07;ReadPosRankSum=-1.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:23,21:53:99:254,0,239
6    90368380    rs34732313    G    A    1565.19    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=5.071;DB;DP=119;Dels=0.0;FS=5.831;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.897;QD=13.15;ReadPosRankSum=0.458;SNPEFF_AMINO_ACID_CHANGE=A4990;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90368329_90368636;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:66,53:119:99:1595,0,1880
6    90371202    rs9444701    G    A    1033.52    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=80;Dels=0.0;FS=7.492;HRun=1;HaplotypeScore=2.4328;MQ=59.48;MQ0=0;MQRankSum=-0.044;QD=12.92;ReadPosRankSum=-1.449;SNPEFF_AMINO_ACID_CHANGE=L4887;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90371150_90371297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:42,38:80:99:1064,0,1199
6    90371704    rs9294443    G    A    1183.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=58.63;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1216,90,0
6    90371986    rs3818132    C    T    120.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.733;QD=6.68;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:12,6:18:99:150,0,405
6    90372128    rs17292425    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    90372574    rs36040566    A    C    1219.13    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=77;Dels=0.0;FS=0.915;HRun=1;HaplotypeScore=1.3123;MQ=59.4;MQ0=0;MQRankSum=0.224;QD=15.83;ReadPosRankSum=1.722;SNPEFF_AMINO_ACID_CHANGE=D4783E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90372511_90372686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1249,0,1117
6    90374456    rs3818133    A    G    131.06    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=11.91;ReadPosRankSum=1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:4,7:11:99:161,0,133
6    90381849    rs7764076    A    G    710.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:744,57,0
6    90385754    rs9451261    A    G    417.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:450,39,0
6    90387116    rs72913975    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:2,2:4:71.48:72,0,71
6    90387233    rs6454769    C    T    1258.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1291,99,0
6    90390233    rs72913976    T    C    80.38    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.1;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
6    90390443    rs9353689    C    A    95.27    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.342;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.787;QD=5.01;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=A4044S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90390308_90390470;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:14,5:19:99:125,0,406
6    90390628    rs117413595    A    C    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,71
6    90393483    rs41273329    G    A    503.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.273;QD=33.54;ReadPosRankSum=-1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:1,14:15:21.44:536,21,0
6    90395887    rs149625307    T    C    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    90397132    rs34766278    G    C    144.31    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.213;DB;DP=26;Dels=0.0;FS=1.909;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.578;QD=5.55;ReadPosRankSum=1.065;SNPEFF_AMINO_ACID_CHANGE=A3794G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90397063_90397157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:20,6:26:99:174,0,566
6    90398197    rs769033    T    C    174.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
6    90400292    rs954638    C    T    254.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
6    90402482    rs9294445    G    A    429.56    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DB;DP=43;Dels=0.0;FS=4.669;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.306;QD=9.99;ReadPosRankSum=0.086;SNPEFF_AMINO_ACID_CHANGE=H3423Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90402162_90402867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:24,19:43:99:460,0,762
6    90402840    rs9351212    C    G    350.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.88;SNPEFF_AMINO_ACID_CHANGE=L3303;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90402162_90402867;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:384,30,0
6    90405306    rs9294446    T    A    1315.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1348,99,0
6    90405993    rs9362672    C    G    190.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=19.03;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:4,6:10:99:220,0,125
6    90408589    rs3736984    A    G    1504.09    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.605;DB;DP=137;Dels=0.0;FS=6.662;HRun=0;HaplotypeScore=2.7888;MQ=59.32;MQ0=0;MQRankSum=1.852;QD=10.98;ReadPosRankSum=1.544;SNPEFF_AMINO_ACID_CHANGE=L3055;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90408584_90408754;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:80,57:137:99:1534,0,2468
6    90408742    rs12530146    C    T    682.27    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=1.825;DB;DP=35;Dels=0.0;FS=5.759;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.234;QD=19.49;ReadPosRankSum=-0.434;SNPEFF_AMINO_ACID_CHANGE=E3004K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90408584_90408754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:12,23:35:99:712,0,353
6    90415764    rs7743484    A    G    1362.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1395,102,0
6    90418262    rs2026634    C    T    5574.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.6;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=T2617;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90418215_90418347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,160:160:99:5574,409,0
6    90420190    rs72915903    A    C    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:66,0,34
6    90422627    rs2013736    G    C    379.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:412,33,0
6    90426270    rs9342205    C    T    513.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:547,42,0
6    90428968    rs6454774    G    A    477.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:510,39,0
6    90432584    rs2016744    A    T    42.03    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.7542;MQ=48.18;MQ0=0;MQRankSum=-0.126;QD=0.55;ReadPosRankSum=-2.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:38,39:77:8.99:74,9,0
6    90432662    rs756363    C    T    7073.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=214;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.08;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,214:214:99:7073,539,0
6    90437699    rs7767196    G    A    983.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,31:31:81.23:1017,81,0
6    90438631    rs76752399    G    T    591.82    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=0.344;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.2;MQ0=0;MQRankSum=-0.298;QD=20.41;ReadPosRankSum=-2.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:10,19:29:99:622,0,281
6    90447924    rs72915946    C    T    454.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.17;MQ0=0;MQRankSum=0.528;QD=16.24;ReadPosRankSum=-0.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:14,14:28:99:485,0,487
6    90448092    rs4140446    C    T    3188.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=30.37;SNPEFF_AMINO_ACID_CHANGE=S1559N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90448045_90448174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3222,238,0
6    90450135    rs2180140    A    G    652.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.765;DB;DP=42;Dels=0.0;FS=1.635;HRun=0;HaplotypeScore=1.7998;MQ=59.56;MQ0=0;MQRankSum=0.516;QD=15.54;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:18,24:42:99:683,0,489
6    90453248    rs2273245    T    C    641.31    HaplotypeScoreFilter13    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=43;Dels=0.0;FS=3.827;HRun=1;HaplotypeScore=16.9437;MQ=58.51;MQ0=0;MQRankSum=-1.775;QD=14.91;ReadPosRankSum=1.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:21,22:43:99:671,0,676
6    90453256    rs11455579    G    GT    531.15    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=45;FS=0.0;HRun=6;HaplotypeScore=301.5639;IndelType=I;MQ=58.58;MQ0=0;MQRankSum=0.232;QD=11.8;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:26,19:45:99:570,0,604
6    90453492    rs11358713    AC    A    812.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=7;HaplotypeScore=106.16;IndelType=D;MQ=60.65;MQ0=0;QD=24.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:4,29:33:84.19:854,84,0
6    90455078    rs149847666    C    T    830.08    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.547;DB;DP=55;Dels=0.0;FS=16.442;HRun=0;HaplotypeScore=0.9983;MQ=58.73;MQ0=0;MQRankSum=1.288;QD=15.09;ReadPosRankSum=-0.716;SNPEFF_AMINO_ACID_CHANGE=V1364;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90454992_90455130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:28,27:55:99:860,0,870
6    90455084    rs9359861    A    G    1942.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.76;MQ0=0;QD=34.68;SNPEFF_AMINO_ACID_CHANGE=H1362;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90454992_90455130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1975,150,0
6    90455429    rs9444704    T    C    62.56    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=5.69;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439638    GT:AD:DP:GQ:PL    0/1:8,3:11:92.55:93,0,280
6    90459454    rs4053618    G    A    362.94    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.787;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.188;QD=7.89;ReadPosRankSum=-2.16;SNPEFF_AMINO_ACID_CHANGE=A1068;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90459262_90459470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439638    GT:AD:DP:GQ:PL    0/1:26,20:46:99:393,0,935
6    90461425    rs1470263    A    G    307.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:340,27,0
6    90463149    rs111982065    GA    G    342.64    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=45;FS=0.0;HRun=12;HaplotypeScore=136.4831;IndelType=D;MQ=59.73;MQ0=0;MQRankSum=2.272;QD=7.61;ReadPosRankSum=1.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:23,22:45:99:382,0,511
6    90468465    rs6937244    C    A    292.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.427;DB;DP=20;Dels=0.05;FS=0.0;HRun=6;HaplotypeScore=0.9665;MQ=57.77;MQ0=0;MQRankSum=1.659;QD=13.92;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:8,12:20:99:322,0,227
6    90468775    rs6937789    C    G    98.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.07;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:3,4:7:99:128,0,102
6    90482250    rs11961825    T    A    782.38    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=0.186;QD=13.04;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:34,26:60:99:812,0,1100
6    90497448    rs6923604    T    C    100.85    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=9.17;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:7,4:11:99:131,0,253
6    90497814    rs4707570    G    A    171.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
6    90499502    rs1036853    G    A    1100.90    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=63;Dels=0.0;FS=0.96;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=17.47;ReadPosRankSum=0.492;SNPEFF_AMINO_ACID_CHANGE=D409;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90499499_90499630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:27,36:63:99:1131,0,703
6    90529343    rs28372875    C    T    1090.81    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.52;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6648;MQ=57.59;MQ0=0;MQRankSum=0.382;QD=13.98;ReadPosRankSum=-1.808;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_90529225_90529442;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369393    GT:AD:DP:GQ:PL    0/1:38,40:78:99:1121,0,1198
6    90565242    rs369328    A    G    161.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.191;QD=13.47;ReadPosRankSum=1.191;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CASP8AP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237177    GT:AD:DP:GQ:PL    0/1:6,6:12:99:192,0,180
6    90577706    .    TG    T    1353.69    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=9.399;DP=154;FS=0.0;HRun=1;HaplotypeScore=1152.8512;IndelType=D;MQ=52.84;MQ0=0;MQRankSum=-8.809;QD=8.79;ReadPosRankSum=1.129;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CASP8AP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237177    GT:AD:DP:GQ:PL    0/1:107,47:154:99:1393,0,4578
6    90577711    .    TCTTTGCCCAGACATGGA    T    5214.85    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=9.214;DP=145;FS=0.704;HRun=0;HaplotypeScore=2084.246;IndelType=D;MQ=53.27;MQ0=0;MQRankSum=-8.751;QD=35.96;ReadPosRankSum=1.643;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CASP8AP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237177    GT:AD:DP:GQ:PL    0/1:108,37:145:99:5215,0,25369
6    90605836    rs7738845    T    A    644.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369352    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:677,54,0
6    90647759    rs80261091    G    C    293.17    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.387;QD=13.96;ReadPosRankSum=1.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257749    GT:AD:DP:GQ:PL    0/1:11,10:21:99:323,0,311
6    90661576    rs2236181    T    C    455.90    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.0;ReadPosRankSum=0.046;SNPEFF_AMINO_ACID_CHANGE=T83;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_90659989_90661581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257749    GT:AD:DP:GQ:PL    0/1:18,20:38:99:486,0,538
6    90718019    rs16882351    T    C    39.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406998    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:70,0,25
6    90718133    rs9444726    C    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.19;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406998    GT:AD:DP:GQ:PL    0/1:2,2:5:70.95:71,0,73
6    91271547    rs16883148    G    A    157.25    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=19.66;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369325    GT:AD:DP:GQ:PL    0/1:2,6:8:61.39:187,0,61
6    91278482    rs157428    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369325    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    93954830    rs1032172    A    G    30.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:61,0,34
6    93956769    rs450238    T    C    360.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:394,33,0
6    93964187    rs345737    C    T    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
6    93964319    rs345736    C    T    1205.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    1/1:0,32:32:90.28:1239,90,0
6    93967851    rs345730    C    T    1923.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_AMINO_ACID_CHANGE=P692;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_93967817_93968002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1956,144,0
6    93967903    rs146203229    T    G    1168.67    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.186;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=59.69;MQ0=0;MQRankSum=-2.046;QD=15.79;ReadPosRankSum=0.964;SNPEFF_AMINO_ACID_CHANGE=Q675P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_93967817_93968002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    0/1:29,44:73:99:1199,0,988
6    93968162    rs168290    C    T    422.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:455,33,0
6    93973686    rs901455    A    C    535.51    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.111;QD=18.47;ReadPosRankSum=-0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    0/1:12,17:29:99:566,0,377
6    93979090    rs3757224    A    T    148.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=16.47;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    0/1:4,5:9:99:178,0,103
6    93982124    rs345713    A    G    2814.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_AMINO_ACID_CHANGE=S447;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_93982016_93982140;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369303    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2848,217,0
6    95173764    rs1322420    C    T    169.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
6    96034881    .    A    ATATG    2686.38    PASS    AC=2;AF=1.00;AN=2;DP=40;FS=0.0;HRun=0;HaplotypeScore=127.0763;IndelType=I;MQ=57.77;MQ0=1;QD=65.52;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_96034278_96035257;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANEA;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000369293    GT:AD:DP:GQ:PL    1/1:3,37:40:99:2728,114,0
6    96053478    rs9387512    T    A    185.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358812    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:218,18,0
6    96650908    rs4307180    A    T    876.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=38.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302103    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:909,66,0
6    96651740    rs3811069    A    G    877.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=32.51;SNPEFF_AMINO_ACID_CHANGE=T237A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_96651024_96653420;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302103    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:911,66,0
6    96969694    rs13210597    C    A    215.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461673    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
6    96972441    rs4537152    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461673    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
6    96974386    rs9320194    A    G    780.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461673    GT:AD:DP:GQ:PL    1/1:0,42:42:84.09:813,84,0
6    96988696    rs2475025    A    T    190.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369278    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:223,18,0
6    96991105    rs12208011    G    A    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369278    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
6    96996228    rs3734238    A    T    437.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369278    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:471,36,0
6    96996244    rs3734239    A    G    367.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369278    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:401,30,0
6    96999220    rs2475024    G    C    692.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6471;MQ=58.84;MQ0=0;MQRankSum=1.552;QD=34.65;ReadPosRankSum=-1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369278    GT:AD:DP:GQ:PL    1/1:1,19:20:54.18:726,54,0
6    96999643    rs2255552    A    G    1203.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369278    GT:AD:DP:GQ:PL    1/1:0,33:33:93.27:1236,93,0
6    96999725    rs1127175    C    T    2624.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=59.49;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=D637;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_96999714_96999799;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0776;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369278    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2658,202,0
6    97052754    rs2064947    C    T    2766.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_AMINO_ACID_CHANGE=N96;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97052626_97052800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326771    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2800,205,0
6    97058553    rs2273621    A    G    2621.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.21;SNPEFF_AMINO_ACID_CHANGE=R204G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97058448_97058634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326771    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2654,211,0
6    97058567    rs2273622    A    G    2690.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=P208;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97058448_97058634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326771    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2724,217,0
6    97063522    rs9373985    C    G    1646.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.07;SNPEFF_AMINO_ACID_CHANGE=S243R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97063485_97064444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326771    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1680,126,0
6    97063555    rs9398148    A    G    1929.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=K254;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97063485_97064444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326771    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1963,147,0
6    97339078    rs6684    A    G    2303.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=37.16;SNPEFF_AMINO_ACID_CHANGE=L144;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97337189_97339267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFAF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316149    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2337,175,0
6    97339088    rs11402    C    T    2212.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.57;SNPEFF_AMINO_ACID_CHANGE=Q140;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97337189_97339267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFAF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316149    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2245,172,0
6    97339275    rs112829627    C    CA    817.11    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.145;DB;DP=42;FS=5.014;HRun=10;HaplotypeScore=178.5825;IndelType=I;MQ=57.93;MQ0=0;MQRankSum=1.815;QD=19.0;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316149    GT:AD:DP:GQ:PL    0/1:11,31:42:0.11:854,0,0
6    97575196    rs2206094    C    T    1555.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369254    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1588,120,0
6    97575423    rs1612775    G    C    1147.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369254    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1181,87,0
6    97578888    rs2387931    A    G    688.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369254    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:722,54,0
6    97587325    rs41289908    G    A    44.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.95;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS22L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275053    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
6    97613163    rs1209290    T    C    1255.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.04;SNPEFF_AMINO_ACID_CHANGE=P1020;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97613122_97613333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS22L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369251    GT:AD:DP:GQ:PL    1/1:0,37:38:99:1288,99,0
6    97626374    rs1737145    A    G    2383.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=V835A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97626319_97626461;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS22L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369251    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2417,178,0
6    97627519    rs12202912    C    T    209.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS22L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275053    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
6    97629689    rs1206171    C    A    766.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS22L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275053    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:799,60,0
6    97677118    rs9481410    G    A    1489.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_AMINO_ACID_CHANGE=T524M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_97676770_97677279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS22L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369251    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1522,111,0
6    97679540    rs67382665    GA    G    450.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=8;HaplotypeScore=46.1877;IndelType=D;MQ=60.57;MQ0=0;QD=23.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS22L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510018    GT:AD:DP:GQ:PL    1/1:2,17:19:51.08:492,51,0
6    97694582    rs113639235    A    ATAG    1467.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=72.8286;IndelType=I;MQ=59.85;MQ0=0;QD=56.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS22L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275053    GT:AD:DP:GQ:PL    1/1:3,22:26:69.24:1510,69,0
6    99283376    rs195860    T    G    205.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=20.54;SNPEFF_AMINO_ACID_CHANGE=G209;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_99282580_99286660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU3F2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328345    GT:AD:DP:GQ:PL    1/1:0,9:10:18.06:238,18,0
6    99328730    rs195831    G    A    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    99353272    rs6935315    A    G    5016.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.805;DB;DP=217;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=5.5083;MQ=59.66;MQ0=0;MQRankSum=-2.334;QD=23.12;ReadPosRankSum=0.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229971    GT:AD:DP:GQ:PL    1/1:2,214:217:99:5016,430,0
6    99623014    rs9375966    T    C    1212.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=35.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-758C21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413107    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1245,96,0
6    99739942    rs221584    A    G    77.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389677    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
6    99771540    rs221527    T    C    453.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=28.35;SNPEFF_AMINO_ACID_CHANGE=T201;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_99771320_99771543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf168;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389677    GT:AD:DP:GQ:PL    1/1:1,15:16:42.10:487,42,0
6    99781218    rs11757364    G    A    1579.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DB;DP=50;Dels=0.0;FS=5.528;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-0.069;QD=31.58;ReadPosRankSum=-0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389677    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1612,102,0
6    99796886    rs2388906    T    G    986.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389677    GT:AD:DP:GQ:PL    1/1:0,31:31:87.25:1019,87,0
6    99796888    rs75411978    G    C    412.53    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.257;QD=13.31;ReadPosRankSum=-1.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389677    GT:AD:DP:GQ:PL    0/1:15,16:31:99:443,0,476
6    99817419    rs11437017    T    TC    2119.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=105.8866;IndelType=I;MQ=60.67;MQ0=0;QD=44.15;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254759    GT:AD:DP:GQ:PL    1/1:1,47:48:99:2161,141,0
6    99817601    rs4144164    A    G    3755.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=59.39;MQ0=0;QD=32.94;SNPEFF_AMINO_ACID_CHANGE=Y101H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_99817280_99817696;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369240    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3755,277,0
6    99819379    rs6925344    T    C    1349.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_AMINO_ACID_CHANGE=S272G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_99819304_99819463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254759    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1382,105,0
6    99819482    rs75377761    T    C    446.37    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.764;DB;DP=26;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=0.9734;MQ=59.28;MQ0=0;MQRankSum=0.922;QD=17.17;ReadPosRankSum=-0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479163    GT:AD:DP:GQ:PL    0/1:10,16:26:99:476,0,301
6    99825348    rs11548336    T    C    825.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=26.63;SNPEFF_AMINO_ACID_CHANGE=K134E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_99825262_99825361;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254759    GT:AD:DP:GQ:PL    1/1:0,31:31:69.19:858,69,0
6    99841907    rs9389317    T    G    774.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNISR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369239    GT:AD:DP:GQ:PL    1/1:0,27:27:69.18:807,69,0
6    99842056    rs9376137    C    A    523.47    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.947;DB;DP=36;Dels=0.0;FS=6.332;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.394;QD=14.54;ReadPosRankSum=-0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNISR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369239    GT:AD:DP:GQ:PL    0/1:17,19:36:99:553,0,441
6    99842138    rs9376138    C    T    115.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.866;MQ=42.94;MQ0=0;QD=10.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNISR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369239    GT:AD:DP:GQ:PL    1/1:0,11:11:12.04:148,12,0
6    99850730    rs9389328    C    T    292.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNISR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369239    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:325,24,0
6    99853727    rs9385739    C    T    129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNISR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463021    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
6    99853866    rs7744072    G    A    1165.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNISR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463021    GT:AD:DP:GQ:PL    1/1:0,32:32:90.30:1199,90,0
6    99860747    rs9321539    T    C    260.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNISR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369239    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
6    99883694    rs9402791    T    C    995.30    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.647;DB;DP=94;Dels=0.0;FS=1.802;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.428;QD=10.59;ReadPosRankSum=-0.522;SNPEFF_AMINO_ACID_CHANGE=A461;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_99880190_99883722;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392738    GT:AD:DP:GQ:PL    0/1:52,42:94:99:1025,0,1676
6    99883704    rs6570065    T    C    2966.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7803;MQ=59.07;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=N458S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_99880190_99883722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392738    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2999,223,0
6    99883842    rs7745005    C    T    1031    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327681    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1064,81,0
6    99893597    rs117598708    A    G    94.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.86;ReadPosRankSum=-1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513344    GT:AD:DP:GQ:PL    0/1:4,4:8:99:125,0,141
6    99893938    rs4504482    T    C    856.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.662;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=1.098;QD=12.59;ReadPosRankSum=-0.362;SNPEFF_AMINO_ACID_CHANGE=G250;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_99893673_99894339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392738    GT:AD:DP:GQ:PL    0/1:34,34:68:99:886,0,1113
6    99894360    rs66817403    CAAAGA    C    383.39    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=3.058;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=156.7486;IndelType=D;MQ=55.73;MQ0=0;MQRankSum=-0.612;QD=13.22;ReadPosRankSum=2.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327681    GT:AD:DP:GQ:PL    0/1:21,8:29:99:422,0,1491
6    99912329    rs6922192    T    G    103.07    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.421;QD=11.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327681    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,140
6    99935975    rs2181687    G    A    295.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327681    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
6    99951750    rs6934692    G    A    1960.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508908    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1993,153,0
6    99955243    rs72185066    G    GA    869.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.408;DB;DP=34;FS=0.0;HRun=11;HaplotypeScore=109.7933;IndelType=I;MQ=59.6;MQ0=0;MQRankSum=1.3;QD=25.58;ReadPosRankSum=1.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508908    GT:AD:DP:GQ:PL    1/1:4,30:34:91.25:912,91,0
6    99958250    rs9389444    C    T    128.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327681    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
6    100006244    rs486881    T    G    1521.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523310    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1555,120,0
6    100010653    rs3831048    AC    A    746.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=46.6164;IndelType=D;MQ=61.13;MQ0=0;QD=39.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369217    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:788,57,0
6    100016240    rs330872    A    G    275.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369217    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:309,24,0
6    100056899    rs9494877    T    C    286.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369214    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:319,24,0
6    100368759    rs4839764    G    A    1303.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=39.49;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281806    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1336,99,0
6    100369284    rs13206575    T    C    32.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.6;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281806    GT:AD:DP:GQ:PL    0/1:5,2:7:62.22:62,0,179
6    100404174    rs7749687    C    T    319.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281806    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:353,27,0
6    100841229    rs3778038    G    T    203.95    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.48;QD=20.39;ReadPosRankSum=1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262901    GT:AD:DP:GQ:PL    0/1:2,8:10:16.57:234,0,17
6    100868492    rs3734357    A    T    111.71    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=18.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262901    GT:AD:DP:GQ:PL    0/1:1,5:6:21.08:142,0,21
6    100895344    rs397662    C    T    171.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=12.25;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262901    GT:AD:DP:GQ:PL    0/1:7,7:14:99:201,0,253
6    100911072    rs2308154    ATATGT    A    274.56    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=65.5278;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=-1.134;QD=22.88;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262901    GT:AD:DP:GQ:PL    0/1:7,5:12:99:314,0,601
6    100964147    rs240780    G    C    788.40    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.04;DB;DP=58;Dels=0.0;FS=1.218;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.59;ReadPosRankSum=0.211;SNPEFF_AMINO_ACID_CHANGE=S1995C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_100964056_100964203;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:32,26:58:99:818,0,1059
6    101037718    rs1006398    T    A    387.73    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=36;Dels=0.0;FS=1.998;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.802;QD=10.77;ReadPosRankSum=-1.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:21,15:36:99:418,0,725
6    101053726    rs7452753    C    T    35.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.9;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:4,2:6:65.41:65,0,115
6    101054999    rs395521    C    T    386.35    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.82;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.674;QD=14.31;ReadPosRankSum=-0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:14,13:27:99:416,0,498
6    101075354    rs2134044    C    A    76.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.31;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:2,3:5:70.60:107,0,71
6    101090377    rs239245    C    A    194.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=9.28;ReadPosRankSum=0.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324696    GT:AD:DP:GQ:PL    0/1:14,7:21:99:225,0,493
6    101094554    rs239239    A    G    444.20    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.29;MQ0=0;MQRankSum=0.009;QD=8.38;ReadPosRankSum=-0.122;SNPEFF_AMINO_ACID_CHANGE=P1190;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_101094491_101094645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:35,18:53:99:474,0,1044
6    101094940    rs239237    A    G    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.69;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324696    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:65,0,32
6    101100528    rs239235    A    G    197.21    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8273;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=8.96;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:15,7:22:99:227,0,537
6    101100783    rs9399641    T    C    965.07    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.035;DB;DP=60;Dels=0.0;FS=1.363;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.237;QD=16.08;ReadPosRankSum=-0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:29,31:60:99:995,0,934
6    101163433    rs9403997    A    C    327.26    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=26;Dels=0.0;FS=4.809;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=12.59;ReadPosRankSum=2.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:14,12:26:99:357,0,469
6    101166095    rs41288423    G    A    827.86    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.169;QD=18.0;ReadPosRankSum=-0.326;SNPEFF_AMINO_ACID_CHANGE=L645;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_101165951_101166127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:18,28:46:99:858,0,525
6    101215223    rs11345864    TA    T    683.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=10;HaplotypeScore=134.8411;IndelType=D;MQ=59.37;MQ0=0;QD=21.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    1/1:5,27:32:83.97:726,84,0
6    101215244    rs7746961    A    G    462.44    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.111;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=58.89;MQ0=0;MQRankSum=-0.461;QD=16.52;ReadPosRankSum=0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:13,14:28:99:492,0,402
6    101246862    rs7772577    T    C    115.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
6    101247503    rs3811078    T    C    310.83    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=17.27;ReadPosRankSum=1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:8,10:18:99:341,0,216
6    101248173    rs41288435    T    C    972.96    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.961;DB;DP=65;Dels=0.0;FS=2.711;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.833;QD=14.97;ReadPosRankSum=-1.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:32,33:65:99:1003,0,1061
6    101248474    rs9322212    T    C    193.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=24.23;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:2,6:8:55.48:224,0,55
6    101248480    rs9322213    T    C    152.64    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=21.81;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:2,5:7:60.48:183,0,60
6    101253788    rs4839792    A    T    458.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=30;Dels=0.0;FS=3.696;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.207;QD=15.27;ReadPosRankSum=-1.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369162    GT:AD:DP:GQ:PL    0/1:15,15:30:99:488,0,471
6    101296389    rs9390698    G    A    817.32    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.966;DB;DP=53;Dels=0.0;FS=5.783;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.934;QD=15.42;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=L146F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_101296296_101296583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324723    GT:AD:DP:GQ:PL    0/1:26,27:53:99:847,0,878
6    101311908    .    T    TA    217.28    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DP=23;FS=0.0;HRun=12;HaplotypeScore=190.6228;IndelType=I;MQ=55.8;MQ0=0;MQRankSum=0.81;QD=9.45;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324723    GT:AD:DP:GQ:PL    0/1:11,11:23:99:256,0,129
6    101312097    rs846791    C    T    5026.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4282;MQ=58.58;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324723    GT:AD:DP:GQ:PL    1/1:0,147:147:99:5027,370,0
6    101312104    rs705600    T    C    4584.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.4081;MQ=58.64;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324723    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4585,343,0
6    101312270    rs17673031    T    C    31.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=7.85;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324723    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:61,0,63
6    101337611    rs9498419    A    G    287.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=22;Dels=0.0;FS=4.036;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.725;QD=13.09;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,10:22:99:318,0,327
6    101337765    rs601360    C    A    186.56    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.014;DB;DP=26;Dels=0.0;FS=3.982;HRun=0;HaplotypeScore=2.3134;MQ=59.11;MQ0=0;MQRankSum=0.239;QD=7.18;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,10:26:99:217,0,437
6    101337779    rs13198473    C    T    267.73    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.1021;MQ=59.03;MQ0=0;MQRankSum=0.088;QD=11.16;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,14:24:99:298,0,307
6    101337780    rs9498420    C    G    254.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.371;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.07;MQ0=0;MQRankSum=0.894;QD=10.19;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,15:24:99:285,0,260
6    101337975    rs612459    T    G    254.20    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=11.55;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,9:22:99:284,0,464
6    101338154    rs592436    T    C    1203.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6918;MQ=54.81;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,39:39:93.28:1236,93,0
6    101338159    rs613338    G    A    493.60    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.076;DB;DP=36;Dels=0.0;FS=3.051;HRun=0;HaplotypeScore=0.734;MQ=54.36;MQ0=0;MQRankSum=-1.54;QD=13.71;ReadPosRankSum=-1.176;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:17,19:36:99:524,0,457
6    101847299    .    G    A    874.60    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DP=79;Dels=0.0;FS=6.912;HRun=0;HaplotypeScore=1.9957;MQ=59.71;MQ0=0;MQRankSum=-0.769;QD=11.07;ReadPosRankSum=0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    0/1:46,33:79:99:905,0,1407
6    102074242    rs56357508    A    G    3314.15    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=6.124;DB;DP=234;DS;Dels=0.0;FS=8.501;HRun=0;HaplotypeScore=3.7317;MQ=59.61;MQ0=0;MQRankSum=1.354;QD=14.16;ReadPosRankSum=0.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    0/1:122,112:234:99:3314,0,3354
6    102130209    rs2852564    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    102133993    rs2852565    G    A    258.84    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=13;Dels=0.0;FS=4.15;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.991;QD=19.91;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    0/1:5,8:13:99:289,0,158
6    102134022    rs2786251    C    G    143.62    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.868;QD=8.98;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    0/1:9,7:16:99:174,0,284
6    102307069    rs9390790    G    A    377.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
6    102337496    .    TG    T    173.76    PASS    AB=0.912;AC=1;AF=0.50;AN=2;BaseQRankSum=3.852;DP=62;FS=27.699;HRun=1;HaplotypeScore=586.128;IndelType=D;MQ=47.47;MQ0=0;MQRankSum=-2.588;QD=2.8;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    0/1:56,6:62:99:213,0,534
6    102337501    .    G    T    101.82    QDFilter2    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.943;DP=66;Dels=0.0;FS=18.303;HRun=3;HaplotypeScore=10.7002;MQ=48.32;MQ0=0;MQRankSum=-4.219;QD=1.54;ReadPosRankSum=3.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    0/1:30,36:66:99:132,0,821
6    102376061    rs2791801    A    G    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
6    102376517    rs2243355    G    A    99.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=6.61;ReadPosRankSum=-0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318991    GT:AD:DP:GQ:PL    0/1:10,5:15:99:129,0,329
6    105192107    rs72218235    TAAC    T    917.41    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=5.654;DB;DP=67;FS=1.058;HRun=0;HaplotypeScore=264.3599;IndelType=D;MQ=59.62;MQ0=0;MQRankSum=1.04;QD=13.69;ReadPosRankSum=1.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:43,24:67:99:956,0,2332
6    105198070    rs7770809    C    T    76.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=0.406;QD=12.77;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,104
6    105198113    rs11293496    AC    A    143.78    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=50.4435;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=1.307;QD=15.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:4,5:9:99:183,0,165
6    105198124    rs55772282    T    G    71.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=7.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:5,4:9:99:101,0,182
6    105198267    rs7752614    A    G    327.59    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.352;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.352;QD=13.65;ReadPosRankSum=-0.363;SNPEFF_AMINO_ACID_CHANGE=F549;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_105198216_105198347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369125    GT:AD:DP:GQ:PL    0/1:10,14:24:99:358,0,314
6    105218982    rs7770269    A    G    408.97    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.396;QD=20.45;ReadPosRankSum=1.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:7,13:20:99:439,0,223
6    105219748    rs76828183    G    GA    99.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=12;FS=0.0;HRun=9;HaplotypeScore=41.5247;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=8.33;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:6,5:12:77.17:139,0,77
6    105219773    rs7741145    T    C    227.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.893;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=58.84;MQ0=0;MQRankSum=0.424;QD=11.36;ReadPosRankSum=-1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:12,8:20:99:257,0,376
6    105231930    rs35543340    A    C    490.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.403;DB;DP=40;Dels=0.0;FS=1.986;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=12.27;ReadPosRankSum=0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:25,15:40:99:521,0,797
6    105232204    rs2290515    C    T    871.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:905,66,0
6    105232233    rs9322817    A    C    1035.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7998;MQ=59.28;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    1/1:0,32:32:81.24:1069,81,0
6    105244526    rs6918700    A    T    835.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519645    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:868,66,0
6    105245049    rs66525522    C    CT    168.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=3;HaplotypeScore=17.2958;IndelType=I;MQ=60.0;MQ0=0;QD=24.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    1/1:2,5:7:15.05:210,15,0
6    105259152    rs2168394    C    T    494.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:527,42,0
6    105300103    rs9322821    T    TGTGTGC    435.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=61.8878;IndelType=I;MQ=60.9;MQ0=0;MQRankSum=0.751;QD=48.44;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    1/1:1,7:9:22.94:478,23,0
6    105300250    rs9499992    A    G    408.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=27;Dels=0.0;FS=3.078;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.208;QD=15.11;ReadPosRankSum=-1.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:12,15:27:99:438,0,388
6    105300262    rs10635352    C    CAG    513.32    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.914;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=126.5417;IndelType=I;MQ=59.53;MQ0=0;MQRankSum=1.998;QD=19.74;ReadPosRankSum=1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262903    GT:AD:DP:GQ:PL    0/1:15,11:26:99:552,0,558
6    105405220    rs112331124    T    TC    488.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=7;HaplotypeScore=49.2604;IndelType=I;MQ=62.59;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345080    GT:AD:DP:GQ:PL    1/1:3,15:18:45.13:530,45,0
6    105406274    rs17065417    A    C    357.39    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.154;QD=16.25;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345080    GT:AD:DP:GQ:PL    0/1:10,12:22:99:387,0,316
6    105548850    rs221657    C    T    254.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BVES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314641    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
6    105573420    rs2275289    G    A    840.30    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.981;DB;DP=70;Dels=0.0;FS=0.999;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.27;QD=12.0;ReadPosRankSum=-1.302;SNPEFF_AMINO_ACID_CHANGE=R129W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_105573266_105573453;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BVES;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314641    GT:AD:DP:GQ:PL    0/1:37,32:70:99:870,0,1172
6    105577172    rs9404603    A    G    374.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BVES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314641    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:408,30,0
6    105577224    rs9404604    A    C    1148.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BVES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314641    GT:AD:DP:GQ:PL    1/1:0,30:30:90.27:1182,90,0
6    105577385    .    A    C    1728.88    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.552;DP=96;Dels=0.0;FS=10.785;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=0.526;QD=18.01;ReadPosRankSum=-1.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BVES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314641    GT:AD:DP:GQ:PL    0/1:40,56:96:99:1759,0,1235
6    105577401    rs4946656    C    T    3353.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BVES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314641    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3353,250,0
6    105585588    rs115826132    G    T    64.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.91;ReadPosRankSum=1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BVES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314641    GT:AD:DP:GQ:PL    0/1:2,3:5:65.60:95,0,66
6    105595261    rs1190274    G    A    2060.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369120    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2093,154,0
6    105595280    rs75021023    C    T    428.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=45;Dels=0.02;FS=5.951;HRun=0;HaplotypeScore=0.9665;MQ=58.99;MQ0=0;MQRankSum=-0.638;QD=9.32;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369120    GT:AD:DP:GQ:PL    0/1:30,15:45:99:459,0,1026
6    105595367    rs1190275    T    A    114.11    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.4123;MQ=56.35;MQ0=0;MQRankSum=-0.437;QD=8.78;ReadPosRankSum=1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369120    GT:AD:DP:GQ:PL    0/1:8,5:13:99:144,0,270
6    105595464    rs1190276    A    G    142.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.76;MQ0=0;QD=28.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369120    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:175,15,0
6    105602108    rs1190280    T    G    75.32    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.616;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=5.38;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POPDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254765    GT:AD:DP:GQ:PL    0/1:10,4:14:99:105,0,374
6    105606802    rs1190283    G    A    128.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369120    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    105609136    rs1190285    T    C    318.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369122    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:352,27,0
6    105609200    rs78510188    C    T    607.83    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.498;DB;DP=39;Dels=0.0;FS=2.183;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.548;QD=15.59;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369122    GT:AD:DP:GQ:PL    0/1:20,19:39:99:638,0,701
6    105609773    rs80020925    A    G    1101.46    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=71;Dels=0.0;FS=1.951;HRun=0;HaplotypeScore=1.9075;MQ=59.15;MQ0=0;MQRankSum=0.537;QD=15.51;ReadPosRankSum=1.069;SNPEFF_AMINO_ACID_CHANGE=N4;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_105609300_105610035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POPDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254765    GT:AD:DP:GQ:PL    0/1:32,39:71:99:1131,0,892
6    105614712    rs1190292    T    G    196.34    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.288;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.644;QD=10.33;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369122    GT:AD:DP:GQ:PL    0/1:11,8:19:99:226,0,358
6    105629058    .    GTGTA    G    223.99    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DP=13;FS=0.0;HRun=0;HaplotypeScore=150.4044;IndelType=D;MQ=53.31;MQ0=0;MQRankSum=2.793;QD=17.23;ReadPosRankSum=0.135;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POPDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254765    GT:AD:DP:GQ:PL    0/1:6,7:13:92.05:263,0,92
6    105736477    .    C    G    83.48    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.7;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369110    GT:AD:DP:GQ:PL    0/1:1,4:5:27.20:113,0,27
6    105845906    rs6910880    G    A    97.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=13.89;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369110    GT:AD:DP:GQ:PL    0/1:3,4:7:99:127,0,102
6    106546557    .    T    G    163.08    FSFilter60    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.31;DP=39;Dels=0.03;FS=66.855;HRun=2;HaplotypeScore=10.9792;MQ=44.1;MQ0=0;MQRankSum=-3.486;QD=4.08;ReadPosRankSum=-0.444;SNPEFF_AMINO_ACID_CHANGE=G3;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_106546481_106546596;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450060    GT:AD:DP:GQ:PL    0/1:17,22:39:99:193,0,559
6    106547372    rs811925    C    G    358.42    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.419;DB;DP=33;Dels=0.0;FS=3.304;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.127;QD=10.86;ReadPosRankSum=1.84;SNPEFF_AMINO_ACID_CHANGE=D167E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_106547175_106547427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369091    GT:AD:DP:GQ:PL    0/1:19,14:33:99:388,0,595
6    106959961    rs4946759    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_AMINO_ACID_CHANGE=E323;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_106959305_106960914;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    106966801    rs13194986    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
6    106967185    rs1159148    A    C    740.24    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.251;DB;DP=61;Dels=0.0;FS=2.226;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.872;QD=12.14;ReadPosRankSum=0.159;SNPEFF_AMINO_ACID_CHANGE=Q293P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_106967006_106969328;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369066    GT:AD:DP:GQ:PL    0/1:29,32:61:99:770,0,952
6    106973313    rs710096    T    C    470.60    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.426;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.729;QD=12.72;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    0/1:19,18:37:99:501,0,689
6    106975415    rs2219666    A    T    659.64    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.803;QD=14.66;ReadPosRankSum=1.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    0/1:24,20:45:99:690,0,787
6    106978314    rs2306099    G    A    250.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=17.86;ReadPosRankSum=-1.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    0/1:6,8:14:99:280,0,208
6    106987161    rs783397    A    G    94.14    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.632;QD=6.28;ReadPosRankSum=0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    0/1:11,4:15:99:124,0,398
6    106987370    rs783396    A    C    1909.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=E1196A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_106987278_106987404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369066    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1943,141,0
6    106989212    rs783392    G    A    395.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.458;DB;DP=28;Dels=0.0;FS=2.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=14.12;ReadPosRankSum=-0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    0/1:14,14:28:99:425,0,461
6    106992299    rs2247346    T    C    216.21    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9989;MQ=57.87;MQ0=0;MQRankSum=0.678;QD=19.66;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    0/1:4,7:11:99:246,0,126
6    106992464    rs1799693    A    G    1271.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=31.02;SNPEFF_AMINO_ACID_CHANGE=K1278;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_106992446_106992572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369066    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1305,99,0
6    106992592    rs2247335    A    T    996.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,32:32:78.25:1029,78,0
6    106992844    rs2066201    C    G    1101.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1134,84,0
6    106993015    rs1770718    T    C    33.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
6    106999658    rs1676010    A    T    1136.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1169,87,0
6    106999822    rs2297970    G    A    1273.57    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=81;Dels=0.0;FS=11.177;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=15.72;ReadPosRankSum=-0.619;SNPEFF_AMINO_ACID_CHANGE=C1395Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_106999727_106999853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369066    GT:AD:DP:GQ:PL    0/1:39,42:81:99:1304,0,1254
6    107001456    rs1770731    A    T    644.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487681    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:677,51,0
6    107003444    rs2297971    G    C    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487681    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    107003810    rs2066202    T    C    1109.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=25.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457437    GT:AD:DP:GQ:PL    1/1:0,44:44:93.25:1143,93,0
6    107006347    rs4946763    T    C    968.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457437    GT:AD:DP:GQ:PL    1/1:0,32:32:78.24:1001,78,0
6    107008422    rs968838    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457437    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    107008430    rs968839    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457437    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    107009090    rs965347    G    A    282.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
6    107009119    rs4946764    A    G    519.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:552,42,0
6    107011930    rs9400027    T    C    208.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=23.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,9:9:24.03:241,24,0
6    107020189    rs6940963    C    T    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285105    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
6    107050867    rs6568446    A    T    947.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369063    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:980,72,0
6    107069232    rs1870868    G    A    1737.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369063    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1771,129,0
6    107077502    rs2054365    G    A    107.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467262    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:140,12,0
6    107088585    rs2306098    T    A    1146.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369044    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1179,90,0
6    107090614    rs11153019    C    A    716.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8216;MQ=57.53;MQ0=0;QD=37.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467262    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:750,57,0
6    107096853    rs9486434    A    C    1060.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369044    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1094,81,0
6    107097123    rs34503502    AAC    A    601.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=54.0;IndelType=D;MQ=58.87;MQ0=0;QD=40.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369044    GT:AD:DP:GQ:PL    1/1:1,14:15:42.14:644,42,0
6    107113509    rs3121448    A    G    172.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369046    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:205,18,0
6    107113715    rs2015205    G    A    1626.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=54;Dels=0.0;FS=3.651;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.621;QD=30.12;ReadPosRankSum=-1.079;SNPEFF_AMINO_ACID_CHANGE=L475;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_107113657_107116292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369046    GT:AD:DP:GQ:PL    1/1:1,53:54:92.72:1659,93,0
6    107113953    rs2169463    C    G    268.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369046    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:302,24,0
6    107360843    rs3763205    C    T    31.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.27;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf203;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311381    GT:AD:DP:GQ:PL    0/1:3,2:5:61.33:61,0,94
6    107361476    rs311207    A    G    588.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf203;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311381    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:621,45,0
6    107365376    rs7767291    C    T    245.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=13.64;ReadPosRankSum=0.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf203;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489790    GT:AD:DP:GQ:PL    0/1:10,8:18:99:275,0,316
6    107365411    rs311249    G    T    1390.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=37.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf203;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489790    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1424,108,0
6    107372242    rs112133213    GTTTTC    G    1677.03    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=6.433;DB;DP=57;FS=0.0;HRun=0;HaplotypeScore=325.2937;IndelType=D;MQ=55.85;MQ0=0;MQRankSum=-1.466;QD=29.42;ReadPosRankSum=1.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf203;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311381    GT:AD:DP:GQ:PL    0/1:26,31:57:99:1716,0,2139
6    107391213    rs3814072    C    T    502.07    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.07;DB;DP=37;Dels=0.0;FS=3.426;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-1.242;QD=13.57;ReadPosRankSum=-1.705;SNPEFF_AMINO_ACID_CHANGE=T394;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_107386386_107392154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEND3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369042    GT:AD:DP:GQ:PL    0/1:20,17:37:99:532,0,607
6    107420387    rs36063846    G    C    447.61    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.889;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.834;QD=17.9;ReadPosRankSum=-1.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369042    GT:AD:DP:GQ:PL    0/1:11,14:25:99:478,0,375
6    107827753    rs17068251    T    C    183.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.276;QD=13.08;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317357    GT:AD:DP:GQ:PL    0/1:7,7:14:99:213,0,249
6    108026317    rs1546962    G    T    287.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:321,24,0
6    108026402    rs1546961    A    C    735.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:768,63,0
6    108026455    rs1546960    A    G    1013.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=30.72;SNPEFF_AMINO_ACID_CHANGE=P156;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_108025855_108026529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369025    GT:AD:DP:GQ:PL    1/1:0,33:33:87.23:1047,87,0
6    108028842    rs4083443    A    G    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
6    108028879    rs3862834    C    T    33.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=11.24;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:64,0,34
6    108028967    rs6921672    T    C    78.58    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.267;QD=5.61;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    0/1:9,5:14:99:109,0,333
6    108029020    rs3734752    T    C    447.07    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.222;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-0.015;QD=11.46;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    0/1:23,16:39:99:477,0,626
6    108029109    rs3734754    T    C    534.88    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.781;DB;DP=47;Dels=0.0;FS=1.165;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.011;QD=11.38;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=P118;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_108029070_108029215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369025    GT:AD:DP:GQ:PL    0/1:26,21:47:99:565,0,729
6    108029180    rs56215636    G    A    265.85    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=16;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=16.62;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=R279W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_108029070_108029215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369022    GT:AD:DP:GQ:PL    0/1:7,9:16:99:296,0,208
6    108041677    rs11751163    C    T    107.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.95;ReadPosRankSum=1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463507    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,174
6    108041801    rs11751218    G    T    961.50    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DB;DP=59;Dels=0.0;FS=1.504;HRun=1;HaplotypeScore=0.8321;MQ=59.61;MQ0=0;MQRankSum=0.755;QD=16.3;ReadPosRankSum=-1.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463507    GT:AD:DP:GQ:PL    0/1:28,31:59:99:991,0,945
6    108042213    rs846977    G    A    548.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:582,42,0
6    108042334    rs846978    T    C    165.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
6    108066144    rs6922304    A    G    197.99    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=34;Dels=0.0;FS=5.488;HRun=0;HaplotypeScore=2.4839;MQ=59.32;MQ0=0;MQRankSum=0.532;QD=5.82;ReadPosRankSum=-0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440927    GT:AD:DP:GQ:PL    0/1:21,13:34:99:228,0,656
6    108068003    rs6934505    C    T    630.27    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.054;DB;DP=49;Dels=0.0;FS=7.469;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.92;QD=12.86;ReadPosRankSum=1.487;SNPEFF_AMINO_ACID_CHANGE=R126Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_108067893_108068093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    0/1:26,23:49:99:660,0,691
6    108076672    rs7750796    C    G    268.91    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.817;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.172;QD=12.81;ReadPosRankSum=1.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    0/1:10,11:21:99:299,0,357
6    108076870    rs11433930    T    TA    112.76    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=41;FS=0.0;HRun=15;HaplotypeScore=252.4632;IndelType=I;MQ=53.14;MQ0=0;MQRankSum=0.0;QD=2.75;ReadPosRankSum=-1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    0/1:29,8:41:99:152,0,140
6    108093328    rs9480798    G    A    1351.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.95;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1384,102,0
6    108093657    rs17528372    A    G    312.27    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.393;QD=31.23;ReadPosRankSum=-1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369020    GT:AD:DP:GQ:PL    0/1:1,9:10:11.66:342,0,12
6    108192785    rs503068    A    T    192.37    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.66;MQ0=0;MQRankSum=-3.388;QD=9.16;ReadPosRankSum=-1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473746    GT:AD:DP:GQ:PL    0/1:10,11:21:99:222,0,320
6    108193148    rs642954    C    T    254.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473746    GT:AD:DP:GQ:PL    1/1:0,8:8:24.03:287,24,0
6    108197998    rs570558    A    G    84.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465210    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
6    108219063    rs9373986    T    C    191.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-1.524;QD=13.69;ReadPosRankSum=1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369002    GT:AD:DP:GQ:PL    0/1:7,7:14:99:222,0,246
6    108230346    rs617920    A    T    152.31    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.76;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484803    GT:AD:DP:GQ:PL    0/1:2,5:7:63.39:182,0,63
6    108233929    rs675117    G    A    246.87    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=23;Dels=0.0;FS=3.821;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=10.73;ReadPosRankSum=1.354;SNPEFF_AMINO_ACID_CHANGE=N132;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_108233920_108233978;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429168    GT:AD:DP:GQ:PL    0/1:14,9:23:99:277,0,391
6    108243122    .    AAAC    A    1051.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.529;DP=38;FS=0.0;HRun=0;HaplotypeScore=376.6639;IndelType=D;MQ=46.95;MQ0=0;MQRankSum=1.223;QD=27.66;ReadPosRankSum=1.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446496    GT:AD:DP:GQ:PL    1/1:33,5:38:92.62:1093,93,0
6    108243123    rs58827902    AAC    A    1171.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=350.4452;IndelType=D;MQ=46.95;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446496    GT:AD:DP:GQ:PL    1/1:18,20:38:99:1213,105,0
6    108245870    rs77804153    TATA    T    476.28    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.205;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=97.834;IndelType=D;MQ=52.47;MQ0=0;MQRankSum=-0.735;QD=21.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446496    GT:AD:DP:GQ:PL    0/1:10,12:22:99:515,0,540
6    108279290    rs2272884    G    A    425.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=28.34;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429168    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:458,36,0
6    108489462    rs383319    G    A    330.64    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.0;DB;DP=19;Dels=0.0;FS=2.935;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=17.4;ReadPosRankSum=-1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368983    GT:AD:DP:GQ:PL    0/1:7,12:19:99:361,0,242
6    108495950    rs2233492    G    A    175.04    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=17.5;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368983    GT:AD:DP:GQ:PL    0/1:3,7:10:76.43:205,0,76
6    108677003    rs2135941    G    A    744.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368977    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:777,60,0
6    108678157    rs6908664    A    G    251.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437715    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:285,21,0
6    108831224    rs12194877    T    C    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368977    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,67
6    108840870    rs2274776    A    G    621.92    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.19;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368977    GT:AD:DP:GQ:PL    0/1:29,22:51:99:652,0,947
6    109175372    rs2806360    G    A    417.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237512    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:450,33,0
6    109190267    rs2806362    A    T    1423.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=59.5;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237512    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1456,120,0
6    109201129    rs17316116    A    C    939.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237512    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:972,72,0
6    109231989    rs5879002    T    TTC    1591.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=70.9419;IndelType=I;MQ=60.36;MQ0=0;QD=53.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368972    GT:AD:DP:GQ:PL    1/1:1,29:30:87.30:1634,87,0
6    109258336    rs2768557    T    C    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368972    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
6    109575596    rs6919557    C    G    828.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=C6orf183;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534901    GT:AD:DP:GQ:PL    1/1:0,25:25:69.15:861,69,0
6    109578530    rs4946952    G    A    75.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=C6orf183;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534901    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
6    109583186    rs1040285    A    G    1477.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=58.73;MQ0=0;MQRankSum=0.527;QD=30.77;ReadPosRankSum=-0.075;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=C6orf183;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534901    GT:AD:DP:GQ:PL    1/1:1,47:48:84.23:1510,84,0
6    109665129    rs10457190    C    G    65.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.358;QD=10.96;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC162P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368965    GT:AD:DP:GQ:PL    0/1:3,3:6:69.42:96,0,69
6    109673933    rs1040284    T    C    984.06    PASS    AB=0.295;AC=1;AF=0.50;AN=2;BaseQRankSum=2.109;DB;DP=45;Dels=0.0;FS=2.053;HRun=0;HaplotypeScore=0.9947;MQ=58.55;MQ0=0;MQRankSum=1.441;QD=21.87;ReadPosRankSum=0.051;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC162P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368965    GT:AD:DP:GQ:PL    0/1:13,31:45:99:1014,0,384
6    109674055    rs11153174    C    T    1389.69    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=3.791;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.69;MQ0=0;MQRankSum=0.592;QD=18.78;ReadPosRankSum=-0.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC162P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368965    GT:AD:DP:GQ:PL    0/1:31,43:74:99:1420,0,854
6    109689431    rs974034    A    G    54.56    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.072;QD=3.64;ReadPosRankSum=-0.938;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CD164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506649    GT:AD:DP:GQ:PL    0/1:12,3:15:84.55:85,0,417
6    109689907    rs11251    G    T    78.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.1;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CD164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413644    GT:AD:DP:GQ:PL    0/1:3,3:6:65.60:109,0,66
6    109748506    rs61318425    T    C    62.45    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=12.49;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417394    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:92,0,30
6    109752565    rs112276334    C    CA    131.47    PASS    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=31;FS=0.0;HRun=15;HaplotypeScore=271.9806;IndelType=I;MQ=54.47;MQ0=0;MQRankSum=0.394;QD=4.24;ReadPosRankSum=-1.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417394    GT:AD:DP:GQ:PL    0/1:24,6:31:99:171,0,104
6    109762236    rs1048203    G    A    279.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=18.64;ReadPosRankSum=-0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MICAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335266    GT:AD:DP:GQ:PL    0/1:6,9:15:99:310,0,185
6    109763040    rs35969918    G    C    788.97    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=1.221;QD=15.17;ReadPosRankSum=-0.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MICAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335266    GT:AD:DP:GQ:PL    0/1:28,24:52:99:819,0,875
6    109764535    rs1476387    G    T    820.08    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=69;Dels=0.0;FS=9.857;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-1.753;QD=11.89;ReadPosRankSum=-2.318;SNPEFF_AMINO_ACID_CHANGE=R265S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_109764470_109764623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258052    GT:AD:DP:GQ:PL    0/1:34,35:69:99:850,0,944
6    109765818    rs2236582    C    G    157.55    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=2.074;QD=12.12;ReadPosRankSum=-2.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258052    GT:AD:DP:GQ:PL    0/1:7,6:13:99:188,0,249
6    109768295    rs910730    G    A    842.27    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=3.712;DB;DP=57;Dels=0.0;FS=4.951;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.221;QD=14.78;ReadPosRankSum=-1.844;SNPEFF_AMINO_ACID_CHANGE=Y260;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_109768276_109768432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MICAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368957    GT:AD:DP:GQ:PL    0/1:28,29:57:99:872,0,704
6    109770999    rs752262    G    C    600.36    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=56;Dels=0.0;FS=5.664;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=10.72;ReadPosRankSum=0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MICAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431946    GT:AD:DP:GQ:PL    0/1:33,23:56:99:630,0,1055
6    109786980    rs3734652    T    C    921.01    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=0.13;DB;DP=55;Dels=0.0;FS=10.888;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.55;QD=16.75;ReadPosRankSum=-1.533;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230122    GT:AD:DP:GQ:PL    0/1:21,34:55:99:951,0,649
6    109797304    rs2236084    A    G    108.40    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.272;QD=6.02;ReadPosRankSum=-1.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230122    GT:AD:DP:GQ:PL    0/1:11,7:18:99:138,0,408
6    109802213    rs76933246    CTAT    C    1645.84    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=7.236;DB;DP=81;FS=6.679;HRun=0;HaplotypeScore=309.7744;IndelType=D;MQ=55.99;MQ0=0;MQRankSum=-1.722;QD=20.32;ReadPosRankSum=-1.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230122    GT:AD:DP:GQ:PL    0/1:40,41:81:99:1685,0,2229
6    109815351    rs7755941    T    C    829.66    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.128;DB;DP=64;Dels=0.0;FS=9.612;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.236;QD=12.96;ReadPosRankSum=1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424296    GT:AD:DP:GQ:PL    0/1:33,31:64:99:860,0,1103
6    109815440    rs7773950    A    G    285.92    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.939;QD=15.05;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424296    GT:AD:DP:GQ:PL    0/1:10,9:19:99:316,0,314
6    109818587    rs71809712    TCA    T    169.63    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=68.4842;IndelType=D;MQ=62.13;MQ0=0;MQRankSum=1.0;QD=14.14;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424296    GT:AD:DP:GQ:PL    0/1:5,7:12:99:209,0,174
6    109827716    rs2277114    C    T    2655.50    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.78;DB;DP=169;Dels=0.0;FS=0.591;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=15.71;ReadPosRankSum=-0.944;SNPEFF_AMINO_ACID_CHANGE=V1555I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_109827530_109827750;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424296    GT:AD:DP:GQ:PL    0/1:81,88:169:99:2685,0,2482
6    109830298    rs6912368    C    T    413.75    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.637;QD=17.24;ReadPosRankSum=-0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424296    GT:AD:DP:GQ:PL    0/1:11,13:24:99:444,0,350
6    109837859    rs10872035    T    C    274.38    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.879;DB;DP=33;Dels=0.0;FS=2.079;HRun=0;HaplotypeScore=0.8941;MQ=58.73;MQ0=0;MQRankSum=0.094;QD=8.31;ReadPosRankSum=-0.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424296    GT:AD:DP:GQ:PL    0/1:21,12:33:99:304,0,647
6    109837879    rs7773915    A    G    166.05    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.949;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-1.361;QD=8.3;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424296    GT:AD:DP:GQ:PL    0/1:14,6:20:99:196,0,442
6    109850199    rs140788861    AAC    A    289.46    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=3.888;DB;DP=40;FS=1.886;HRun=0;HaplotypeScore=157.5606;IndelType=D;MQ=57.56;MQ0=1;MQRankSum=1.147;QD=7.06;ReadPosRankSum=-1.177;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_109848832_109850276;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000355283    GT:AD:DP:GQ:PL    0/1:30,11:40:99:328,0,1008
6    109863238    rs9386812    A    C    341.13    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.348;QD=14.21;ReadPosRankSum=0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341338    GT:AD:DP:GQ:PL    0/1:11,13:24:99:371,0,370
6    109900443    rs2357127    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368948    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    109940498    rs10499053    A    G    1123.79    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=3.489;DB;DP=57;Dels=0.0;FS=1.599;HRun=0;HaplotypeScore=0.6651;MQ=58.78;MQ0=0;MQRankSum=0.447;QD=19.72;ReadPosRankSum=1.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341338    GT:AD:DP:GQ:PL    0/1:23,34:57:99:1154,0,698
6    109940672    rs4946993    T    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341338    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    109954065    .    C    CATAG    505.76    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=0;HaplotypeScore=75.3259;IndelType=I;MQ=53.79;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341338    GT:AD:DP:GQ:PL    1/1:5,5:14:29.89:548,30,0
6    109954252    rs1406957    C    T    680.69    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.74;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=-0.441;QD=15.83;ReadPosRankSum=-1.272;SNPEFF_AMINO_ACID_CHANGE=L376;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_109952912_109954306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285397    GT:AD:DP:GQ:PL    0/1:21,22:43:99:711,0,643
6    109962904    rs7744981    A    C    97.15    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.83;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532976    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,193
6    109980317    rs4947004    G    A    367.35    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=24;Dels=0.0;FS=3.074;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=15.31;ReadPosRankSum=-0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285397    GT:AD:DP:GQ:PL    0/1:10,14:24:99:397,0,349
6    109982160    rs2016207    C    T    800.64    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.671;DB;DP=44;Dels=0.0;FS=1.232;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=2.523;QD=18.2;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285397    GT:AD:DP:GQ:PL    0/1:18,26:44:99:831,0,559
6    109983533    rs9400315    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    109992884    rs6568591    C    T    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.36;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285397    GT:AD:DP:GQ:PL    0/1:2,2:4:71.42:71,0,72
6    109993291    rs12197838    G    A    604.03    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.104;DB;DP=34;Dels=0.0;FS=5.752;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=17.77;ReadPosRankSum=-1.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285397    GT:AD:DP:GQ:PL    0/1:15,19:34:99:634,0,487
6    110048165    rs6921615    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    110048489    rs113252518    C    CT    776.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.809;DB;DP=39;FS=0.0;HRun=11;HaplotypeScore=259.969;IndelType=I;MQ=56.65;MQ0=0;MQRankSum=-0.578;QD=19.92;ReadPosRankSum=0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    1/1:6,31:39:82.78:819,83,0
6    110053721    rs11153215    T    G    53.32    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=4.85;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    0/1:8,3:11:83.32:83,0,288
6    110053824    rs11377100    G    GT    546.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.252;DB;DP=29;FS=10.3;HRun=13;HaplotypeScore=144.2051;IndelType=I;MQ=60.8;MQ0=0;MQRankSum=1.352;QD=18.84;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    1/1:4,24:29:40.20:588,40,0
6    110059510    rs2273752    C    A    647.03    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=1.631;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=10.11;ReadPosRankSum=1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    0/1:37,27:64:99:677,0,1153
6    110062873    rs1322124    T    G    221.38    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=24.6;ReadPosRankSum=1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454215    GT:AD:DP:GQ:PL    0/1:2,7:9:45.11:251,0,45
6    110064255    rs72045093    TATTTC    T    935.28    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=4.494;DB;DP=29;FS=3.032;HRun=0;HaplotypeScore=158.5317;IndelType=D;MQ=55.85;MQ0=0;MQRankSum=-1.749;QD=32.25;ReadPosRankSum=-0.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454215    GT:AD:DP:GQ:PL    0/1:12,17:29:99:974,0,1038
6    110065049    rs149608939    TAAC    T    361.44    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=101.5855;IndelType=D;MQ=54.82;MQ0=0;MQRankSum=-1.216;QD=17.21;ReadPosRankSum=-0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368941    GT:AD:DP:GQ:PL    0/1:12,9:21:99:400,0,701
6    110085366    rs13196280    G    T    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,70
6    110106234    rs10499054    A    G    1261.69    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=108;Dels=0.0;FS=3.637;HRun=2;HaplotypeScore=0.8667;MQ=59.79;MQ0=0;MQRankSum=0.158;QD=11.68;ReadPosRankSum=-0.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    0/1:58,49:108:99:1292,0,1757
6    110110943    rs9384723    G    T    234.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.507;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.042;QD=11.74;ReadPosRankSum=-0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    0/1:12,8:20:99:265,0,446
6    110146303    rs9398218    G    A    930.46    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=4.336;DB;DP=82;Dels=0.0;FS=0.911;HRun=0;HaplotypeScore=1.4105;MQ=59.26;MQ0=0;MQRankSum=0.378;QD=11.35;ReadPosRankSum=0.967;SNPEFF_AMINO_ACID_CHANGE=S547;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_110146291_110146627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441478    GT:AD:DP:GQ:PL    0/1:50,32:82:99:960,0,1361
6    110146588    rs1127775    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230124    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    110422602    rs76612383    C    G    38.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359451    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:69,0,33
6    110511814    rs4339500    A    G    30.39    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.34;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307731    GT:AD:DP:GQ:PL    0/1:5,2:7:60.38:60,0,153
6    110540873    rs79527064    A    G    515.98    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.57;DB;DP=37;Dels=0.0;FS=5.496;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-2.142;QD=13.95;ReadPosRankSum=0.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439165    GT:AD:DP:GQ:PL    0/1:18,19:37:99:546,0,633
6    110620177    rs41288584    T    C    811.37    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.339;DB;DP=40;Dels=0.0;FS=7.588;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.398;QD=20.28;ReadPosRankSum=-1.018;SNPEFF_AMINO_ACID_CHANGE=H245R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_110620125_110620353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf186;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338882    GT:AD:DP:GQ:PL    0/1:12,28:40:99:841,0,357
6    110643956    rs6908306    T    C    1203.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf186;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338882    GT:AD:DP:GQ:PL    1/1:0,41:41:93.30:1237,93,0
6    110644112    rs112341783    A    AG    977.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=64.2151;IndelType=I;MQ=62.76;MQ0=0;QD=42.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf186;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338882    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:1020,69,0
6    110679062    rs4945854    T    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf186;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338882    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
6    110736610    rs9384742    T    C    463.72    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.293;QD=15.46;ReadPosRankSum=0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368923    GT:AD:DP:GQ:PL    0/1:13,17:30:99:494,0,407
6    110746526    rs7756222    T    C    916.07    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=60;Dels=0.0;FS=13.236;HRun=0;HaplotypeScore=1.8646;MQ=59.23;MQ0=0;MQRankSum=1.985;QD=15.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439654    GT:AD:DP:GQ:PL    0/1:27,33:60:99:946,0,731
6    110760008    rs12210538    A    G    2171.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5757;MQ=59.65;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=M239T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_110759923_110760050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434949    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2205,166,0
6    110778323    rs717567    G    A    536.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330550    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:570,42,0
6    110797821    rs11153236    A    G    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461487    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
6    110948099    rs12203400    T    C    843.70    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.597;DB;DP=33;Dels=0.0;FS=1.5;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.707;QD=25.57;ReadPosRankSum=1.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323817    GT:AD:DP:GQ:PL    0/1:9,24:33:99:874,0,270
6    110991916    rs2691185    T    C    619.61    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.904;QD=19.99;ReadPosRankSum=0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323817    GT:AD:DP:GQ:PL    0/1:11,19:31:99:650,0,321
6    111208555    rs2070969    G    A    244.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:278,24,0
6    111210251    rs56171216    C    G    192.75    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.916;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.648;QD=10.14;ReadPosRankSum=0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    0/1:12,7:19:99:223,0,367
6    111213194    rs12201535    T    C    186.69    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.742;QD=23.34;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    0/1:1,7:8:19.58:217,0,20
6    111213217    rs811921    A    G    476.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:509,39,0
6    111213785    rs111272213    G    A    220    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=16.92;ReadPosRankSum=1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    0/1:6,7:13:99:250,0,183
6    111213852    rs143823571    CT    C    653.37    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=38;FS=0.0;HRun=2;HaplotypeScore=110.8412;IndelType=D;MQ=60.28;MQ0=0;MQRankSum=0.352;QD=17.19;ReadPosRankSum=-1.497;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    0/1:20,18:38:99:692,0,650
6    111213927    rs72563607    T    TC    981.53    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.3;DB;DP=78;FS=0.0;HRun=8;HaplotypeScore=250.2614;IndelType=I;MQ=59.82;MQ0=0;MQRankSum=-0.742;QD=12.58;ReadPosRankSum=0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1021,0,594
6    111214093    .    CTG    C    1732.43    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=7.368;DP=89;FS=1.739;HRun=0;HaplotypeScore=294.789;IndelType=D;MQ=60.06;MQ0=1;MQRankSum=-0.089;QD=19.25;ReadPosRankSum=1.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    0/1:42,48:89:99:1771,0,2027
6    111214879    rs1803096    T    C    238.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=19.85;ReadPosRankSum=0.536;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368876    GT:AD:DP:GQ:PL    0/1:4,8:12:92.21:268,0,92
6    111280332    rs9374225    G    C    218.17    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.069;DB;DP=17;Dels=0.0;FS=6.864;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.973;QD=12.83;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329970    GT:AD:DP:GQ:PL    0/1:9,8:17:99:248,0,306
6    111280538    rs143233557    G    A    136.45    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=10.5;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329970    GT:AD:DP:GQ:PL    0/1:8,5:13:99:166,0,292
6    111283791    rs12154018    T    A    74.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.98;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329970    GT:AD:DP:GQ:PL    0/1:2,3:5:67.96:105,0,68
6    111306044    .    A    AAAAC    526.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DP=10;FS=0.0;HRun=0;HaplotypeScore=32.5559;IndelType=I;MQ=52.65;MQ0=0;MQRankSum=-0.751;QD=52.63;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    0/1:4,6:10:24.84:565,0,25
6    111313072    rs146111239    AT    A    197.44    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=34.4999;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=15.19;ReadPosRankSum=1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    0/1:4,9:13:99:236,0,112
6    111313155    rs3894917    G    T    43.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    0/1:1,2:3:12.66:73,0,13
6    111318294    rs3763194    G    A    111.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.9;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    0/1:4,4:8:99:141,0,113
6    111318382    rs73763466    A    T    326.80    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.517;DB;DP=25;Dels=0.0;FS=4.925;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.245;QD=13.07;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    0/1:12,13:25:99:357,0,386
6    111318588    rs12191479    A    G    35.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.9;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:66,0,72
6    111321037    rs3763196    A    G    280.98    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.505;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.501;QD=10.81;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    0/1:16,10:26:99:311,0,488
6    111329064    rs9384781    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.55;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    111329221    rs35637912    CT    C    40.37    QDFilter2    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=0.375;DB;DP=45;FS=2.156;HRun=17;HaplotypeScore=338.1144;IndelType=D;MQ=53.49;MQ0=0;MQRankSum=-0.087;QD=0.9;ReadPosRankSum=1.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368864    GT:AD:DP:GQ:PL    0/1:16,20:45:79.40:79,0,201
6    111527616    rs74503622    T    C    82.14    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.53;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368850    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:112,0,28
6    111527696    rs402014    C    T    249.81    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=16.65;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368850    GT:AD:DP:GQ:PL    0/1:7,8:15:99:280,0,243
6    111527988    rs402940    G    A    1420.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368850    GT:AD:DP:GQ:PL    1/1:0,40:41:99:1453,105,0
6    111528108    rs433569    T    C    256.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368850    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:289,24,0
6    111543067    rs193282    G    A    88.63    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.747;QD=11.08;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368850    GT:AD:DP:GQ:PL    0/1:1,7:8:18.39:119,0,18
6    111587030    rs150195164    A    G    461.37    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.373;QD=15.91;ReadPosRankSum=1.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1919;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368847    GT:AD:DP:GQ:PL    0/1:13,16:29:99:491,0,411
6    111587266    rs11153279    T    C    1258.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=D167;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_111587079_111592370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1919;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368847    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1292,99,0
6    111629592    rs17540234    A    AT    1161.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=1;HaplotypeScore=59.7233;IndelType=I;MQ=59.19;MQ0=0;QD=40.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358835    GT:AD:DP:GQ:PL    1/1:2,27:29:81.27:1204,81,0
6    111630939    rs17540214    A    T    234.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=19.54;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358835    GT:AD:DP:GQ:PL    0/1:4,8:12:99:264,0,133
6    111654680    rs11348142    CT    C    60.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=14;HaplotypeScore=14.1821;IndelType=D;MQ=60.0;MQ0=0;QD=12.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358835    GT:AD:DP:GQ:PL    1/1:0,5:5:14.88:103,15,0
6    111665023    rs240990    G    A    254.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413831    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
6    111665071    rs1623806    T    C    632.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413831    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:666,48,0
6    111670211    rs150306516    G    GA    167.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=13;HaplotypeScore=27.6548;IndelType=I;MQ=60.94;MQ0=0;QD=16.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358835    GT:AD:DP:GQ:PL    1/1:2,7:10:23.86:209,24,0
6    111673207    rs463854    C    G    72.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467500    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
6    111673211    rs463853    C    G    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467500    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
6    111695073    rs455645    C    T    3401.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9667;MQ=59.56;MQ0=0;QD=36.19;SNPEFF_AMINO_ACID_CHANGE=S1417;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_111693799_111697960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435970    GT:AD:DP:GQ:PL    1/1:0,93:94:99:3402,250,0
6    111695268    rs455732    C    T    4731.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.865;MQ=59.83;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=V1352;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_111693799_111697960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435970    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4732,355,0
6    111695887    rs462779    G    A    2884.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=T1146I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_111693799_111697960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435970    GT:AD:DP:GQ:PL    1/1:0,85:86:99:2917,217,0
6    111696257    rs461646    G    A    2408.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_AMINO_ACID_CHANGE=L1023;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_111693799_111697960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435970    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2441,190,0
6    111696852    rs458486    T    C    2534.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=G824;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_111693799_111697960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435970    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2568,205,0
6    111711232    rs17539462    C    CG    734.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=33.9863;IndelType=I;MQ=61.78;MQ0=0;QD=40.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=REV3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460981    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:776,54,0
6    111884058    rs2280985    A    G    70.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464903    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:103,9,0
6    111896777    rs12192705    C    T    374.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.65;MQ0=0;QD=31.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340026    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:407,36,0
6    111896790    rs67165529    CAAAA    C    237.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.53;DB;DP=17;FS=0.0;HRun=21;HaplotypeScore=215.2266;IndelType=D;MQ=31.67;MQ0=0;MQRankSum=1.355;QD=13.96;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340026    GT:AD:DP:GQ:PL    1/1:6,10:17:21.25:279,21,0
6    111901453    rs1043730    G    T    1128.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_AMINO_ACID_CHANGE=H323Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_111901400_111901592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359831    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1162,84,0
6    111901770    rs2075967    C    T    117.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340026    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
6    112041359    rs706895    T    C    168.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.85;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229470    GT:AD:DP:GQ:PL    0/1:4,6:10:99:198,0,114
6    112388358    rs9400518    T    G    418.37    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.68;ReadPosRankSum=-0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368658    GT:AD:DP:GQ:PL    0/1:18,15:33:99:448,0,571
6    112435912    rs1050353    A    T    463.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.094;DB;DP=33;Dels=0.0;FS=1.4;HRun=1;HaplotypeScore=2.7157;MQ=60.0;MQ0=0;MQRankSum=-1.225;QD=14.05;ReadPosRankSum=1.903;SNPEFF_AMINO_ACID_CHANGE=V1713;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_112435866_112435959;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389463    GT:AD:DP:GQ:PL    0/1:16,16:33:99:494,0,506
6    112438912    rs3216857    GA    G    699.31    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=4.916;DB;DP=41;FS=1.435;HRun=1;HaplotypeScore=109.2179;IndelType=D;MQ=60.79;MQ0=0;MQRankSum=0.483;QD=17.06;ReadPosRankSum=-0.691;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521693    GT:AD:DP:GQ:PL    0/1:21,20:41:99:738,0,837
6    112443134    rs4945897    G    A    271.36    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=15.96;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521693    GT:AD:DP:GQ:PL    0/1:7,10:17:99:301,0,241
6    112457145    rs2032565    A    T    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.81;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230538    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:69,0,73
6    112457156    rs2032566    T    C    40.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.05;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230538    GT:AD:DP:GQ:PL    0/1:2,2:4:64.74:70,0,65
6    112457390    rs2032567    C    T    285.58    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.3;MQ0=0;MQRankSum=-0.243;QD=8.65;ReadPosRankSum=-0.917;SNPEFF_AMINO_ACID_CHANGE=G1110S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_112457325_112457456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389463    GT:AD:DP:GQ:PL    0/1:21,12:33:99:316,0,676
6    112457471    rs2032568    G    A    129.10    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.847;QD=8.07;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230538    GT:AD:DP:GQ:PL    0/1:9,7:16:99:159,0,294
6    112460648    rs2072020    G    A    82.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.54;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230538    GT:AD:DP:GQ:PL    0/1:1,3:5:29.19:113,0,29
6    112480041    rs3752577    A    G    528.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=45;Dels=0.0;FS=6.828;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.707;QD=11.74;ReadPosRankSum=-1.031;SNPEFF_AMINO_ACID_CHANGE=S563;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_112479934_112480082;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389463    GT:AD:DP:GQ:PL    0/1:27,18:45:99:558,0,777
6    112493872    rs1050348    A    G    1373.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=Y491H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_112493813_112494006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389463    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1407,105,0
6    112506375    rs9374309    G    A    1389.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518842    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1423,108,0
6    112506583    rs6908219    G    T    1165.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518842    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1198,90,0
6    112535131    rs28360619    C    A    741.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.85;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.79;QD=14.84;ReadPosRankSum=-0.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243219    GT:AD:DP:GQ:PL    0/1:25,25:50:99:772,0,894
6    112537497    rs2068770    A    G    479.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243219    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:513,39,0
6    112646353    rs9481253    A    G    525.26    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=38;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=13.82;ReadPosRankSum=1.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-506B6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404237    GT:AD:DP:GQ:PL    0/1:20,18:38:99:555,0,733
6    112670796    rs12192606    T    C    369.80    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.65;QD=24.65;ReadPosRankSum=0.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441065    GT:AD:DP:GQ:PL    0/1:3,12:15:43.75:400,0,44
6    112671611    rs11153361    G    A    1151.36    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=66;Dels=0.0;FS=5.037;HRun=0;HaplotypeScore=1.9899;MQ=59.72;MQ0=0;MQRankSum=0.55;QD=17.44;ReadPosRankSum=0.669;SNPEFF_AMINO_ACID_CHANGE=G234D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_112670806_112672498;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441065    GT:AD:DP:GQ:PL    0/1:28,38:66:99:1181,0,875
6    114026006    rs11968784    T    A    36.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.29;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL357519.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408632    GT:AD:DP:GQ:PL    0/1:2,3:5:51.24:66,0,51
6    114225811    rs352099    A    G    843.17    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.233;DB;DP=64;Dels=0.0;FS=2.188;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.373;QD=13.17;ReadPosRankSum=1.768;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-544L8__B.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314481    GT:AD:DP:GQ:PL    0/1:30,34:64:99:873,0,932
6    114240257    rs7742680    G    A    804.78    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=66;Dels=0.0;FS=2.475;HRun=1;HaplotypeScore=0.9967;MQ=59.65;MQ0=0;MQRankSum=-1.257;QD=12.19;ReadPosRankSum=-0.572;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-544L8__B.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314481    GT:AD:DP:GQ:PL    0/1:35,31:66:99:835,0,1055
6    114265287    rs9481408    C    T    71.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.86;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520746    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,107
6    114277625    rs2475631    T    C    37.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.27;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518690    GT:AD:DP:GQ:PL    0/1:4,2:6:67.59:68,0,147
6    114279783    rs2243356    A    T    765.17    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.798;DB;DP=74;Dels=0.0;FS=2.13;HRun=0;HaplotypeScore=1.8319;MQ=59.69;MQ0=0;MQRankSum=1.318;QD=10.34;ReadPosRankSum=-0.963;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520170    GT:AD:DP:GQ:PL    0/1:45,29:74:99:795,0,1489
6    114378970    rs2282237    C    T    1322.18    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=127;Dels=0.0;FS=4.517;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.642;QD=10.41;ReadPosRankSum=-1.212;SNPEFF_AMINO_ACID_CHANGE=E164;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_114376750_114379354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312719    GT:AD:DP:GQ:PL    0/1:76,51:127:99:1352,0,2321
6    114384171    rs17189832    G    T    107.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=15.37;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312719    GT:AD:DP:GQ:PL    0/1:3,4:7:96.81:138,0,97
6    114598314    rs796768    G    C    207.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312719    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
6    114598726    rs7453897    C    T    246.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312719    GT:AD:DP:GQ:PL    1/1:0,11:11:21.07:279,21,0
6    116264354    rs550480    C    A    1241.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368626    GT:AD:DP:GQ:PL    1/1:0,41:41:93.30:1275,93,0
6    116264386    rs57164993    AT    A    89.09    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.165;DB;DP=30;FS=0.0;HRun=13;HaplotypeScore=185.7785;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.913;QD=2.97;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368626    GT:AD:DP:GQ:PL    0/1:21,9:30:99:128,0,330
6    116289044    rs554139    A    G    37.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368626    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:67,0,30
6    116325142    rs3756772    C    T    652.91    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=2.677;DB;DP=45;Dels=0.0;FS=1.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.839;QD=14.51;ReadPosRankSum=-1.16;SNPEFF_AMINO_ACID_CHANGE=G122R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116325040_116325161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368626    GT:AD:DP:GQ:PL    0/1:19,26:45:99:683,0,572
6    116429623    rs517352    T    A    143.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.84;DB;DP=14;Dels=0.0;FS=3.358;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=10.24;ReadPosRankSum=-0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319550    GT:AD:DP:GQ:PL    0/1:7,7:14:99:173,0,248
6    116439220    rs515745    A    G    359.52    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.559;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.169;QD=10.57;ReadPosRankSum=-0.886;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL10A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243222    GT:AD:DP:GQ:PL    0/1:21,13:34:99:390,0,688
6    116441229    rs111661664    T    TGGG    9495.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=142;FS=0.0;HRun=1;HaplotypeScore=430.0525;IndelType=I;MQ=57.53;MQ0=0;QD=66.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL10A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452729    GT:AD:DP:GQ:PL    1/1:10,129:142:99:9496,409,0
6    116441646    rs2228547    C    G    432.19    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=52;Dels=0.0;FS=6.83;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.137;QD=8.31;ReadPosRankSum=0.156;SNPEFF_AMINO_ACID_CHANGE=G545R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116440086_116443124;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL10A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243222    GT:AD:DP:GQ:PL    0/1:35,17:52:99:462,0,1175
6    116446576    rs1064583    A    G    1128.16    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=79;Dels=0.0;FS=6.44;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=14.28;ReadPosRankSum=1.85;SNPEFF_AMINO_ACID_CHANGE=M27T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116446502_116446670;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL10A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243222    GT:AD:DP:GQ:PL    0/1:41,38:79:99:1158,0,1253
6    116544094    rs1204800    G    A    506.20    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.326;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.339;QD=22.01;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319550    GT:AD:DP:GQ:PL    0/1:7,15:23:99:536,0,224
6    116560025    rs1204816    G    C    162.02    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=9.0;ReadPosRankSum=-0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5DC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319550    GT:AD:DP:GQ:PL    0/1:11,7:18:99:192,0,392
6    116574455    rs2232472    G    A    928.66    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.909;DB;DP=65;Dels=0.0;FS=14.613;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.072;QD=14.29;ReadPosRankSum=-1.32;SNPEFF_AMINO_ACID_CHANGE=H239;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116571151_116575261;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420283    GT:AD:DP:GQ:PL    0/1:31,34:65:99:959,0,1025
6    116575083    rs2232470    C    A    1020.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=R30L;SNPEFF_CODON_CHANGE=cGa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116571151_116575261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420283    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1053,78,0
6    116575344    rs910391    T    G    130.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=18.7;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420283    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:163,12,0
6    116599665    rs9400897    T    C    332.05    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.013;DB;DP=44;Dels=0.0;FS=1.236;HRun=3;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.063;QD=7.55;ReadPosRankSum=0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540275    GT:AD:DP:GQ:PL    0/1:28,16:44:99:362,0,761
6    116600453    rs3749894    C    T    474.69    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.074;DB;DP=43;Dels=0.0;FS=5.1;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.874;QD=11.04;ReadPosRankSum=0.283;SNPEFF_AMINO_ACID_CHANGE=A181T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116597741_116601066;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368608    GT:AD:DP:GQ:PL    0/1:25,18:43:99:505,0,800
6    116600465    rs78371471    T    TCAC    2686.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=158.9505;IndelType=I;MQ=57.5;MQ0=0;QD=62.47;SNPEFF_AMINO_ACID_CHANGE=V176VW;SNPEFF_CODON_CHANGE=gtg/gtGTGg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_6_116597741_116601066;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368608    GT:AD:DP:GQ:PL    1/1:3,40:43:99:2728,126,0
6    116600774    rs3749895    C    G    337.71    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.496;QD=10.23;ReadPosRankSum=0.408;SNPEFF_AMINO_ACID_CHANGE=A74P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116597741_116601066;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368608    GT:AD:DP:GQ:PL    0/1:16,17:33:99:368,0,368
6    116600810    rs3828743    G    A    603.82    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=1.342;DB;DP=32;Dels=0.0;FS=1.617;HRun=1;HaplotypeScore=2.5584;MQ=60.0;MQ0=0;MQRankSum=0.33;QD=18.87;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=P62S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116597741_116601066;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368608    GT:AD:DP:GQ:PL    0/1:11,21:32:99:634,0,267
6    116757557    rs560644    T    C    2877.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=N642;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116756750_116759442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331677    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2910,232,0
6    116782488    rs2858833    T    C    527.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM26F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368604    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:560,42,0
6    116784264    rs508250    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM26F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368604    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
6    116784850    rs41289932    C    G    1464.21    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4012;MQ=59.82;MQ0=0;MQRankSum=0.709;QD=11.71;ReadPosRankSum=-0.95;SNPEFF_AMINO_ACID_CHANGE=N138K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116784446_116784931;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM26F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368606    GT:AD:DP:GQ:PL    0/1:72,53:125:99:1494,0,2272
6    116875427    rs7762318    G    A    917.73    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.072;DB;DP=65;Dels=0.0;FS=2.105;HRun=0;HaplotypeScore=0.6651;MQ=59.36;MQ0=0;MQRankSum=0.479;QD=14.12;ReadPosRankSum=-0.951;SNPEFF_AMINO_ACID_CHANGE=L14;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116875354_116875514;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM26D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405399    GT:AD:DP:GQ:PL    0/1:32,33:65:99:948,0,996
6    116875493    rs9387420    T    C    589.88    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.579;DB;DP=48;Dels=0.0;FS=9.702;HRun=1;HaplotypeScore=0.5784;MQ=59.52;MQ0=0;MQRankSum=0.644;QD=12.29;ReadPosRankSum=0.229;SNPEFF_AMINO_ACID_CHANGE=L179;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116874913_116875514;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM26D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368596    GT:AD:DP:GQ:PL    0/1:27,21:48:99:620,0,853
6    116878947    rs6906668    C    T    692.51    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.538;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2702;MQ=59.01;MQ0=0;MQRankSum=0.99;QD=14.73;ReadPosRankSum=0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM26D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368596    GT:AD:DP:GQ:PL    0/1:21,25:47:99:723,0,649
6    116892839    rs2295598    C    T    136.38    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.4;ReadPosRankSum=1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368590    GT:AD:DP:GQ:PL    0/1:6,5:11:99:166,0,192
6    116911265    rs7765598    G    A    63.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368590    GT:AD:DP:GQ:PL    0/1:1,3:4:27.30:93,0,27
6    116912033    rs77165075    CT    C    118.12    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=37;FS=0.0;HRun=15;HaplotypeScore=238.9868;IndelType=D;MQ=52.68;MQ0=0;MQRankSum=1.741;QD=3.19;ReadPosRankSum=1.781;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RWDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368590    GT:AD:DP:GQ:PL    0/1:23,14:37:99:157,0,356
6    116938232    rs13213314    C    G    1327.75    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.131;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6649;MQ=59.75;MQ0=0;MQRankSum=-1.01;QD=14.28;ReadPosRankSum=1.551;SNPEFF_AMINO_ACID_CHANGE=T149S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116937650_116938472;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229554    GT:AD:DP:GQ:PL    0/1:48,45:93:99:1358,0,1467
6    116943975    rs41289942    G    A    1862.93    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=4.507;DB;DP=105;Dels=0.0;FS=1.679;HRun=0;HaplotypeScore=1.5572;MQ=59.6;MQ0=0;MQRankSum=0.709;QD=17.74;ReadPosRankSum=-2.152;SNPEFF_AMINO_ACID_CHANGE=R244H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116943931_116944165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229554    GT:AD:DP:GQ:PL    0/1:46,59:105:99:1893,0,1237
6    116947067    rs78256732    G    A    96.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229554    GT:AD:DP:GQ:PL    0/1:4,4:8:99:126,0,127
6    116947601    rs9400939    A    T    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.49;MQ0=0;MQRankSum=0.358;QD=15.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229554    GT:AD:DP:GQ:PL    0/1:2,3:5:60.54:110,0,61
6    116950734    rs6927567    G    A    1172.26    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=3.899;DB;DP=71;Dels=0.0;FS=5.221;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.168;QD=16.51;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=R309H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116950730_116950865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368580    GT:AD:DP:GQ:PL    0/1:29,41:71:99:1202,0,786
6    116950833    rs784133    T    C    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.55;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=L342P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116950730_116950865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368580    GT:AD:DP:GQ:PL    1/1:0,100:102:99:3269,250,0
6    116967163    .    A    G    142.22    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=10.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZUFSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368576    GT:AD:DP:GQ:PL    0/1:8,5:13:99:172,0,294
6    116968513    rs6568959    T    C    162.84    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.054;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=10.18;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZUFSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368573    GT:AD:DP:GQ:PL    0/1:10,6:16:99:193,0,357
6    116968546    rs76685480    AC    A    446.64    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.06;DB;DP=41;FS=0.0;HRun=2;HaplotypeScore=121.7634;IndelType=D;MQ=61.31;MQ0=0;MQRankSum=1.697;QD=10.89;ReadPosRankSum=-0.388;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZUFSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368573    GT:AD:DP:GQ:PL    0/1:25,16:41:99:486,0,934
6    116973182    rs4946188    T    C    821.12    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.524;DB;DP=59;Dels=0.0;FS=1.075;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.281;QD=13.92;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=N379D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_116973167_116973355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZUFSP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368576    GT:AD:DP:GQ:PL    0/1:28,31:59:99:851,0,891
6    116979930    rs6910565    A    G    286.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=35;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.595;QD=8.17;ReadPosRankSum=0.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZUFSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368573    GT:AD:DP:GQ:PL    0/1:20,15:35:99:316,0,561
6    117019846    rs7357061    G    T    399.71    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=16.65;ReadPosRankSum=1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356348    GT:AD:DP:GQ:PL    0/1:11,13:24:99:430,0,374
6    117045491    rs2243368    T    C    333.56    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-1.038;QD=12.35;ReadPosRankSum=-1.453;SNPEFF_AMINO_ACID_CHANGE=L318;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117045460_117045538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356348    GT:AD:DP:GQ:PL    0/1:11,16:27:99:364,0,354
6    117045674    rs1150108    A    G    77.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356348    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
6    117073894    rs10649123    T    TAG    438.11    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=20;FS=4.771;HRun=0;HaplotypeScore=151.2213;IndelType=I;MQ=46.37;MQ0=0;MQRankSum=-0.395;QD=21.91;ReadPosRankSum=0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM162B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368557    GT:AD:DP:GQ:PL    0/1:14,5:20:99:477,0,219
6    117114403    rs6901971    G    A    140.15    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=10.78;ReadPosRankSum=0.696;SNPEFF_AMINO_ACID_CHANGE=H386;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117113275_117114413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530250    GT:AD:DP:GQ:PL    0/1:8,5:13:99:170,0,296
6    117121894    rs6917467    G    A    1185.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.92;SNPEFF_AMINO_ACID_CHANGE=H292;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117121747_117121959;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530250    GT:AD:DP:GQ:PL    1/1:0,33:33:90.28:1218,90,0
6    117130704    rs2274911    G    A    261.81    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.886;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=10.07;ReadPosRankSum=0.701;SNPEFF_AMINO_ACID_CHANGE=P91S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117130477_117130780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC6A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310357    GT:AD:DP:GQ:PL    0/1:17,9:26:99:292,0,560
6    117149835    rs144251510    A    G    71.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=11.89;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310357    GT:AD:DP:GQ:PL    0/1:2,4:6:67.27:101,0,67
6    117215114    rs339340    T    C    361.19    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.665;DB;DP=34;Dels=0.0;FS=1.565;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.451;QD=10.62;ReadPosRankSum=-0.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:19,15:34:99:391,0,645
6    117215380    rs1406980    T    C    78.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.74;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:109,0,29
6    117237524    rs1321372    G    A    1007.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    1/1:0,26:26:78.22:1041,78,0
6    117237584    rs2184343    T    G    162.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:196,15,0
6    117239086    rs13213246    A    C    218.67    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=14.58;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:8,7:15:99:249,0,279
6    117239141    rs6936629    T    C    1652.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1685,129,0
6    117240590    rs144004030    C    T    125.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=14.0;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471966    GT:AD:DP:GQ:PL    0/1:3,6:9:99:156,0,100
6    117240593    rs1321366    G    A    239.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=26.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471966    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:273,21,0
6    117243181    rs77230084    C    CT    88.74    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=140.744;IndelType=I;MQ=55.14;MQ0=0;MQRankSum=-0.158;QD=4.44;ReadPosRankSum=-0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471966    GT:AD:DP:GQ:PL    0/1:12,6:20:94.13:128,0,94
6    117243260    rs7764347    T    C    689.31    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.56;MQ0=0;MQRankSum=-0.203;QD=20.27;ReadPosRankSum=1.061;SNPEFF_AMINO_ACID_CHANGE=T461;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117243205_117243314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:8,26:34:99:719,0,241
6    117244374    rs7770158    T    C    815.29    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.484;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.387;QD=13.82;ReadPosRankSum=-0.767;SNPEFF_AMINO_ACID_CHANGE=N514;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117244270_117244387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:28,31:59:99:845,0,890
6    117246429    rs9489067    A    C    62.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=10.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487683    GT:AD:DP:GQ:PL    0/1:2,4:6:58.68:92,0,59
6    117246719    rs4946206    C    T    1159.11    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=4.826;DB;DP=89;Dels=0.0;FS=3.341;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.371;QD=13.02;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=H594;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117246616_117246822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:49,40:89:99:1189,0,1242
6    117248218    rs611349    T    C    949.12    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=4.034;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9413;MQ=59.54;MQ0=0;MQRankSum=-0.556;QD=9.49;ReadPosRankSum=2.302;SNPEFF_AMINO_ACID_CHANGE=G638;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117248190_117248702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:64,36:100:99:979,0,1835
6    117249847    rs597688    A    G    316.62    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.534;QD=11.31;ReadPosRankSum=-0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:16,12:28:99:347,0,553
6    117250182    rs673055    C    T    182.45    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=1.589;QD=22.81;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:2,6:8:23.70:212,0,24
6    117252341    rs639646    A    G    36.68    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.616;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=2.62;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:10,4:14:66.68:67,0,386
6    117252672    rs631089    C    A    291.42    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.422;DB;DP=25;Dels=0.0;FS=3.565;HRun=1;HaplotypeScore=0.9998;MQ=59.07;MQ0=0;MQRankSum=-1.943;QD=11.66;ReadPosRankSum=0.52;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RFX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332958    GT:AD:DP:GQ:PL    0/1:14,11:25:99:321,0,420
6    117587054    rs433425    T    C    80.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.597;QD=7.28;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326274    GT:AD:DP:GQ:PL    0/1:7,4:11:99:110,0,222
6    117587074    rs439418    A    G    84.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=8.46;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326274    GT:AD:DP:GQ:PL    0/1:6,4:10:99:115,0,191
6    117609529    rs2778    A    G    58.79    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-1.977;QD=4.9;ReadPosRankSum=-1.788;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368507    GT:AD:DP:GQ:PL    0/1:7,5:12:88.78:89,0,257
6    117622028    rs62430805    A    G    246.63    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.991;QD=18.97;ReadPosRankSum=1.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368507    GT:AD:DP:GQ:PL    0/1:5,8:13:99:277,0,158
6    117631463    rs71554877    T    TTAA    607.48    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.255;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=148.7685;IndelType=I;MQ=59.05;MQ0=0;MQRankSum=-0.554;QD=13.81;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368507    GT:AD:DP:GQ:PL    0/1:32,12:44:99:647,0,593
6    117678083    rs2243384    A    G    1203.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368507    GT:AD:DP:GQ:PL    1/1:0,37:37:90.30:1236,90,0
6    117681436    rs36181502    G    GACAC    648.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=75.8665;IndelType=I;MQ=52.81;MQ0=0;QD=46.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368507    GT:AD:DP:GQ:PL    1/1:3,6:14:33.11:691,33,0
6    117686943    rs2243383    A    T    294.12    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.832;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=18.38;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368507    GT:AD:DP:GQ:PL    0/1:5,11:16:99:324,0,153
6    117714346    rs1535330    C    G    3166.44    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.57;DB;DP=219;Dels=0.0;FS=3.046;HRun=0;HaplotypeScore=6.7266;MQ=59.49;MQ0=0;MQRankSum=-1.623;QD=14.46;ReadPosRankSum=1.982;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368507    GT:AD:DP:GQ:PL    0/1:114,105:219:99:3196,0,3786
6    117746851    rs149360578    G    A    613.48    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.655;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=1.964;QD=12.03;ReadPosRankSum=-1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467125    GT:AD:DP:GQ:PL    0/1:28,23:51:99:643,0,815
6    117842669    rs72963484    T    A    561.74    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.09;DB;DP=49;Dels=0.0;FS=3.043;HRun=2;HaplotypeScore=0.8321;MQ=59.53;MQ0=0;MQRankSum=-0.63;QD=11.46;ReadPosRankSum=-0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296955    GT:AD:DP:GQ:PL    0/1:25,24:49:99:592,0,845
6    117853264    rs210650    C    G    72.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296955    GT:AD:DP:GQ:PL    1/1:0,3:3:9:104,9,0
6    117858223    rs72965515    G    C    318.67    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DB;DP=18;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=17.7;ReadPosRankSum=-1.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296955    GT:AD:DP:GQ:PL    0/1:7,11:18:99:349,0,201
6    117858455    rs112120142    T    C    340.55    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.2;DB;DP=33;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=55.09;MQ0=0;MQRankSum=-1.03;QD=10.32;ReadPosRankSum=0.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296955    GT:AD:DP:GQ:PL    0/1:18,15:33:99:371,0,621
6    117860058    rs210617    T    C    74.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.91;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296955    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:105,0,67
6    117862048    rs2071825    C    A    1206.74    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.639;DB;DP=97;Dels=0.0;FS=1.733;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.468;QD=12.44;ReadPosRankSum=0.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296955    GT:AD:DP:GQ:PL    0/1:53,44:97:99:1237,0,1686
6    117864144    rs210619    A    G    291.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296955    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
6    117869491    rs210621    G    A    703.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=50;Dels=0.0;FS=4.891;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.197;QD=14.07;ReadPosRankSum=0.64;SNPEFF_AMINO_ACID_CHANGE=G480;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_117869070_117869602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368503    GT:AD:DP:GQ:PL    0/1:25,25:50:99:733,0,714
6    117884738    rs210636    C    A    198.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCBLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296955    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
6    117896728    rs10484300    A    C    1155.13    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.622;DB;DP=75;Dels=0.0;FS=1.002;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.849;QD=15.4;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000052569    GT:AD:DP:GQ:PL    0/1:36,39:75:99:1185,0,1037
6    117896786    rs2301424    A    G    437.97    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.513;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.769;QD=14.6;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000052569    GT:AD:DP:GQ:PL    0/1:14,16:30:99:468,0,485
6    117896840    rs3833931    GA    G    260.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=54.8324;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=21.73;ReadPosRankSum=-1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000052569    GT:AD:DP:GQ:PL    0/1:4,8:12:99:300,0,156
6    118320108    rs9387532    A    G    123.75    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.36;MQ0=0;MQRankSum=0.922;QD=17.68;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:2,5:7:55.92:154,0,56
6    118320365    rs12212953    A    G    769.42    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.189;DB;DP=61;Dels=0.0;FS=1.054;HRun=0;HaplotypeScore=0.9665;MQ=43.62;MQ0=6;MQRankSum=1.766;QD=12.61;ReadPosRankSum=1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:29,32:61:99:799,0,629
6    118320595    rs6928714    C    A    189.50    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=46.75;MQ0=1;MQRankSum=-0.174;QD=7.58;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:14,11:25:99:219,0,372
6    118320674    rs6908842    T    C    224.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.85;MQ0=1;QD=18.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    1/1:0,12:12:21.06:257,21,0
6    118320784    rs148221334    G    A    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
6    118475798    rs205966    G    A    1424.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.925;DB;DP=86;Dels=0.0;FS=2.404;HRun=4;HaplotypeScore=1.4972;MQ=59.3;MQ0=0;MQRankSum=1.241;QD=16.57;ReadPosRankSum=1.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:34,51:86:99:1455,0,1006
6    118556535    rs7762823    G    A    185.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.55;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:4,6:10:99:215,0,110
6    118556628    rs9489326    T    C    602.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.149;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.096;QD=15.05;ReadPosRankSum=0.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:20,20:40:99:632,0,656
6    118588490    rs731695    T    C    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,109
6    118596941    rs283086    C    T    40.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
6    118606159    rs66496924    A    AT    101.07    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=33.9682;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=9.19;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:6,5:11:99:140,0,132
6    118635079    rs1572226    C    G    214.75    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=16.52;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    0/1:6,7:13:99:245,0,199
6    118635122    rs283049    G    C    931.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360388    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:964,69,0
6    118786486    rs3798420    T    C    1510.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=37.76;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368488    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1543,114,0
6    118832320    rs9489424    T    C    410.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360290    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:443,33,0
6    118845168    rs12203844    A    G    302.81    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.71;MQ0=0;MQRankSum=0.251;QD=16.82;ReadPosRankSum=0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360290    GT:AD:DP:GQ:PL    0/1:6,11:18:99:333,0,198
6    118886615    rs763254    T    C    252.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.971;QD=14.0;ReadPosRankSum=-0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462101    GT:AD:DP:GQ:PL    0/1:9,9:18:99:282,0,322
6    118886961    rs3734382    G    T    1595.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=P149T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_118886692_118887479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360290    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1629,123,0
6    118887303    rs3734381    T    C    1500.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.286;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=-1.432;QD=29.41;ReadPosRankSum=1.334;SNPEFF_AMINO_ACID_CHANGE=S137G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_118886692_118887479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368491    GT:AD:DP:GQ:PL    1/1:2,49:51:81.62:1533,82,0
6    118953374    rs6569024    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360290    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    118973953    rs9489486    A    G    851.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489276    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:885,63,0
6    118974042    rs9489487    C    T    542.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489276    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:576,42,0
6    119137147    rs79670608    T    C    363.92    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.245;DB;DP=25;Dels=0.0;FS=6.629;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.115;QD=14.56;ReadPosRankSum=-0.19;SNPEFF_AMINO_ACID_CHANGE=T377A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_119135852_119137457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243218    GT:AD:DP:GQ:PL    0/1:12,13:25:99:394,0,400
6    119149149    rs284921    C    G    3453.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=C177S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_119149090_119149293;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243218    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3454,262,0
6    119149545    rs59547233    A    G    79.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368478    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
6    119243072    rs41292554    T    C    133.39    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.815;QD=7.41;ReadPosRankSum=-0.906;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425154    GT:AD:DP:GQ:PL    0/1:11,7:18:99:163,0,403
6    119243377    rs12194515    G    T    126.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=11.52;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425154    GT:AD:DP:GQ:PL    0/1:6,5:11:99:157,0,220
6    119244845    rs7746114    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425154    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
6    119245024    rs12197931    C    T    1167.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.023;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.62;MQ0=0;MQRankSum=-0.163;QD=19.46;ReadPosRankSum=-0.505;SNPEFF_AMINO_ACID_CHANGE=S191;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_119244976_119245292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316068    GT:AD:DP:GQ:PL    0/1:24,36:60:99:1198,0,661
6    119245392    rs67476232    CA    C    590.85    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=4.664;DB;DP=31;FS=0.0;HRun=1;HaplotypeScore=78.1358;IndelType=D;MQ=61.72;MQ0=0;MQRankSum=1.301;QD=19.06;ReadPosRankSum=-2.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316068    GT:AD:DP:GQ:PL    0/1:13,18:31:99:630,0,531
6    119285691    rs797017    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338891    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    119296378    rs78125835    T    TA    157.35    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.304;DB;DP=28;FS=0.0;HRun=11;HaplotypeScore=112.0508;IndelType=I;MQ=59.17;MQ0=0;MQRankSum=-0.361;QD=5.62;ReadPosRankSum=1.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338891    GT:AD:DP:GQ:PL    0/1:19,7:28:99:196,0,266
6    119300477    rs4946382    A    G    206.92    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.462;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=6.67;ReadPosRankSum=-0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338891    GT:AD:DP:GQ:PL    0/1:18,13:31:99:237,0,609
6    119327112    rs794262    G    A    295.42    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.781;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=17.38;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338891    GT:AD:DP:GQ:PL    0/1:7,10:17:99:325,0,192
6    119509785    rs2142887    C    G    588.59    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=45;Dels=0.0;FS=3.356;HRun=0;HaplotypeScore=0.5784;MQ=59.49;MQ0=0;MQRankSum=1.245;QD=13.08;ReadPosRankSum=0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    0/1:23,21:45:99:619,0,698
6    119509870    rs2142888    G    A    319.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    1/1:0,12:12:27.07:352,27,0
6    119509937    rs1008471    G    A    207.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
6    119509969    rs1008472    T    C    113.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
6    119510739    rs2072888    C    T    1350.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1384,111,0
6    119510777    rs2072889    T    G    2065.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2099,157,0
6    119510941    rs2072890    C    A    1887.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=A478;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_119510829_119511048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1921,156,0
6    119511192    rs6569055    T    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    119522250    rs116964802    G    C    77.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=12.86;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    0/1:3,3:6:94.15:107,0,94
6    119522252    rs3822996    G    T    201.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
6    119522306    rs9387641    T    C    163.25    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.85;MQ0=0;MQRankSum=-0.533;QD=11.66;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    0/1:5,9:14:99:193,0,172
6    119522353    rs9481890    T    C    284.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.594;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.462;QD=13.53;ReadPosRankSum=0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    0/1:12,9:21:99:314,0,408
6    119522553    rs9481891    A    G    133.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=13.33;ReadPosRankSum=-1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368468    GT:AD:DP:GQ:PL    0/1:5,5:10:99:163,0,165
6    119569721    rs763293    T    A    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:71,0,28
6    119611660    rs11153805    G    C    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.86;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,111
6    119611708    rs9489670    C    T    104.35    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=9.49;ReadPosRankSum=-1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:7,4:11:99:134,0,256
6    119611989    rs9489671    A    T    349.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.269;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.22;QD=12.93;ReadPosRankSum=0.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:15,12:27:99:379,0,544
6    119623032    rs6420707    C    G    101.19    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=57.87;MQ0=0;MQRankSum=-0.597;QD=9.2;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:7,4:11:99:131,0,218
6    119623035    rs6420708    C    T    127.02    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=58.2;MQ0=0;MQRankSum=-0.101;QD=9.77;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:7,6:13:99:157,0,237
6    119623079    rs6917129    A    G    185.27    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.816;QD=8.06;ReadPosRankSum=1.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:12,11:23:99:215,0,436
6    119623080    rs72966433    T    C    182.26    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.317;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.043;QD=7.59;ReadPosRankSum=1.622;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:13,11:24:99:212,0,457
6    119623358    rs11153807    G    A    206.92    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=15.92;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:5,8:13:99:237,0,175
6    119623415    rs6918089    G    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    119627976    rs6915559    G    A    1246.45    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.36;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5085;MQ=59.61;MQ0=0;MQRankSum=0.155;QD=21.13;ReadPosRankSum=-1.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:20,39:59:99:1276,0,668
6    119628029    rs195092    C    T    2031.62    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.962;DB;DP=125;Dels=0.0;FS=4.217;HRun=1;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-1.405;QD=16.25;ReadPosRankSum=1.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:52,73:125:99:2062,0,1722
6    119628198    rs6915947    G    A    622.82    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.343;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6316;MQ=59.53;MQ0=0;MQRankSum=0.153;QD=12.71;ReadPosRankSum=-1.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:29,20:49:99:653,0,1088
6    119628287    rs6569071    A    G    184.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=15.35;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,206
6    119653186    rs7754482    G    A    329.64    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=31;Dels=0.0;FS=1.585;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.36;QD=10.63;ReadPosRankSum=-0.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368466    GT:AD:DP:GQ:PL    0/1:18,13:31:99:360,0,562
6    121436070    rs13199297    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    121436422    rs7772508    G    T    1561.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.53;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1594,120,0
6    121436489    .    T    C    133.68    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.298;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=8.91;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    0/1:8,7:15:99:164,0,289
6    121482295    rs1632545    A    G    308.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:342,27,0
6    121491472    rs1273749    G    A    1764.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1798,135,0
6    121526447    rs9320795    G    C    178.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:211,18,0
6    121526459    rs35328788    G    T    69.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
6    121560155    rs12191616    C    T    1406.53    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.298;DB;DP=74;Dels=0.0;FS=7.671;HRun=0;HaplotypeScore=1.8533;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=19.01;ReadPosRankSum=0.526;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    0/1:34,40:74:99:1437,0,1050
6    121577113    rs9401384    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,72
6    121577370    rs7745023    T    C    1004.80    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=53;Dels=0.0;FS=1.083;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=18.96;ReadPosRankSum=-1.737;SNPEFF_AMINO_ACID_CHANGE=I599V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_121577230_121577431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    0/1:21,32:53:99:1035,0,645
6    121620608    rs9387944    G    T    642.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=58.99;MQ0=0;QD=27.95;SNPEFF_AMINO_ACID_CHANGE=T375K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_121620592_121620651;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:676,51,0
6    121625056    rs4946562    G    A    86.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422369    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    121625774    .    G    GA    723.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.487;DP=54;FS=13.336;HRun=8;HaplotypeScore=127.294;IndelType=I;MQ=60.4;MQ0=0;MQRankSum=-0.033;QD=13.39;ReadPosRankSum=2.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422369    GT:AD:DP:GQ:PL    0/1:27,27:54:99:762,0,410
6    121626079    rs4412244    T    C    651.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422369    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:684,54,0
6    121626171    rs10499106    A    C    78.64    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.66;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422369    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:109,0,30
6    121629167    rs9398629    G    A    596.61    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.618;DB;DP=43;Dels=0.0;FS=1.206;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.402;QD=13.87;ReadPosRankSum=-0.621;SNPEFF_AMINO_ACID_CHANGE=C215;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_121629122_121629247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    0/1:23,20:43:99:627,0,635
6    121632008    rs9372653    T    A    1136.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275159    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1170,87,0
6    122720806    rs6926219    G    A    107.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=7.16;ReadPosRankSum=0.8;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_122720691_122720975;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368455    GT:AD:DP:GQ:PL    0/1:10,5:15:99:137,0,294
6    122733496    .    CT    C    224.12    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=3.776;DP=40;FS=1.979;HRun=11;HaplotypeScore=125.079;IndelType=D;MQ=60.24;MQ0=0;MQRankSum=0.055;QD=5.6;ReadPosRankSum=-1.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368455    GT:AD:DP:GQ:PL    0/1:22,16:40:99:263,0,594
6    122734972    rs549302    G    A    110.66    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.81;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368455    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,102
6    122743502    rs487487    T    C    1122.72    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=3.4;DB;DP=79;Dels=0.0;FS=10.002;HRun=0;HaplotypeScore=1.9931;MQ=59.71;MQ0=0;MQRankSum=1.278;QD=14.21;ReadPosRankSum=0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368455    GT:AD:DP:GQ:PL    0/1:44,35:79:99:1153,0,1424
6    122745009    rs556439    A    G    44.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.97;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368455    GT:AD:DP:GQ:PL    0/1:2,3:5:32.73:75,0,33
6    122752550    .    T    TTA    264.89    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DP=14;FS=5.756;HRun=0;HaplotypeScore=56.8493;IndelType=I;MQ=59.91;MQ0=0;MQRankSum=0.101;QD=18.92;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368455    GT:AD:DP:GQ:PL    0/1:7,7:14:99:304,0,187
6    122775195    rs499825    A    C    55.49    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=2.43;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=5.04;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339697    GT:AD:DP:GQ:PL    0/1:7,4:11:85.48:85,0,210
6    122792608    rs12662883    G    C    76.11    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.03;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339697    GT:AD:DP:GQ:PL    0/1:1,3:4:24.09:106,0,24
6    123022496    rs4382328    A    G    239.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.85;MQ0=0;MQRankSum=-1.067;QD=15.98;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258014    GT:AD:DP:GQ:PL    0/1:5,10:15:99:270,0,163
6    123101348    rs2171068    G    C    551.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356535    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:585,45,0
6    123101647    rs2243372    A    G    675.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356535    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:709,57,0
6    123104703    rs9401596    A    G    234.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FABP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356535    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:267,21,0
6    123117805    rs35083464    C    T    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPDL3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368440    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:71,0,34
6    123122385    rs9372718    A    C    331.62    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.523;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=9.75;ReadPosRankSum=-0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPDL3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487215    GT:AD:DP:GQ:PL    0/1:22,12:34:99:362,0,775
6    123331913    rs11968540    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275162    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
6    123369548    rs6916008    C    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275162    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:72,0,71
6    123369910    rs6900862    T    C    2415.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.71;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275162    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2449,202,0
6    123370012    rs4624884    G    T    213.98    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=19.45;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275162    GT:AD:DP:GQ:PL    0/1:4,7:11:99:244,0,131
6    123377282    rs9388175    A    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275162    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    123539609    rs361509    C    T    209.98    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=-0.453;QD=11.67;ReadPosRankSum=-0.272;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    0/1:11,7:18:99:240,0,396
6    123539684    rs361508    C    T    909.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.07;MQ0=0;QD=18.2;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    1/1:0,50:50:72.21:943,72,0
6    123539904    rs7754205    C    T    418.80    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.761;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.224;QD=8.38;ReadPosRankSum=0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    0/1:34,16:50:99:449,0,1077
6    123545159    rs11368178    GA    G    30.42    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=24;FS=0.0;HRun=14;HaplotypeScore=93.8259;IndelType=D;MQ=59.03;MQ0=0;MQRankSum=-0.609;QD=1.27;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    0/1:16,8:24:69.45:69,0,276
6    123580660    rs12661887    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    123581789    rs68127338    G    GAA    272.95    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=1.45;DB;DP=27;FS=0.0;HRun=15;HaplotypeScore=194.3507;IndelType=I;MQ=55.72;MQ0=0;MQRankSum=-0.25;QD=10.11;ReadPosRankSum=-2.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    0/1:15,8:27:28.36:312,0,28
6    123589106    rs10457445    C    T    76.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
6    123590778    rs1367677    G    A    127.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
6    123600100    rs143535631    CA    C    1008.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=2;HaplotypeScore=73.2709;IndelType=D;MQ=59.76;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    1/1:0,27:27:81.26:1051,81,0
6    123687288    rs2873479    A    C    3409.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=35.89;SNPEFF_AMINO_ACID_CHANGE=I438S;SNPEFF_CODON_CHANGE=aTt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_123687280_123687327;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3410,247,0
6    123687432    rs7769808    T    C    845.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    1/1:0,26:26:75.20:878,75,0
6    123699042    rs6901953    T    C    199.15    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.498;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=7.97;ReadPosRankSum=-0.673;SNPEFF_AMINO_ACID_CHANGE=K396;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_123699011_123699043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    0/1:14,11:25:99:229,0,488
6    123818580    rs9375256    A    G    136.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333613    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
6    123818628    rs4576276    G    C    128.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333613    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    123819847    rs9320940    T    C    1203.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333613    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1236,102,0
6    123833457    rs6902416    G    C    1672.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_AMINO_ACID_CHANGE=L106V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_123833448_123833507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333613    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1705,123,0
6    123837617    rs9385302    A    G    608.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333613    GT:AD:DP:GQ:PL    1/1:0,18:18:51.13:642,51,0
6    123850194    rs9490795    G    A    76.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
6    123850730    rs9490796    A    G    215.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
6    123850799    rs9490797    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    123851590    rs12198164    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
6    123851610    rs12198167    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
6    123868665    rs7450199    G    A    175.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
6    123869607    rs9490809    G    C    1248.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_AMINO_ACID_CHANGE=T128S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_123869599_123869757;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334268    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1281,93,0
6    123869769    rs71779499    TAA    T    116.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=15;HaplotypeScore=33.0639;IndelType=D;MQ=61.34;MQ0=0;QD=14.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:1,7:8:17.98:159,18,0
6    123891882    rs13200076    G    A    35.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.0;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    0/1:3,3:6:65.97:66,0,86
6    123892044    rs12193784    A    G    1018.14    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.932;DB;DP=96;Dels=0.0;FS=3.231;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.786;QD=10.61;ReadPosRankSum=-0.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    0/1:59,37:96:99:1048,0,1953
6    123892337    rs2295732    G    A    1626.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1660,123,0
6    123892432    rs1407220    G    A    124.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265491    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
6    124676248    rs10872282    T    A    35.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=6;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.727;QD=5.96;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368416    GT:AD:DP:GQ:PL    0/1:2,4:6:29.55:66,0,30
6    124676264    rs3757218    C    T    75.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.406;QD=9.45;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368416    GT:AD:DP:GQ:PL    0/1:3,4:8:88.83:106,0,89
6    124676716    rs12203907    T    C    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368416    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
6    124979689    rs1479039    T    C    690.73    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=46;Dels=0.0;FS=3.112;HRun=1;HaplotypeScore=2.7297;MQ=59.5;MQ0=0;MQRankSum=1.578;QD=15.02;ReadPosRankSum=0.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368417    GT:AD:DP:GQ:PL    0/1:22,23:46:99:721,0,650
6    125144352    rs2025251    T    G    1857.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545433    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1890,141,0
6    125144525    rs3831017    GAC    G    175.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=34.345;IndelType=D;MQ=60.0;MQ0=0;QD=17.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545433    GT:AD:DP:GQ:PL    1/1:4,6:10:18.06:217,18,0
6    125232072    rs699387    T    C    826.53    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.521;DB;DP=53;Dels=0.0;FS=1.051;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.025;QD=15.59;ReadPosRankSum=-0.258;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-510H23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439075    GT:AD:DP:GQ:PL    0/1:25,28:53:99:857,0,844
6    125232368    rs781740    G    T    187.11    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=13.37;ReadPosRankSum=-0.267;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-510H23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439075    GT:AD:DP:GQ:PL    0/1:5,9:14:99:217,0,174
6    125233518    rs781742    A    G    1344.63    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.834;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=11.3;ReadPosRankSum=-0.959;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-510H23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439075    GT:AD:DP:GQ:PL    0/1:63,56:119:99:1375,0,1953
6    125252731    rs4896596    C    T    31.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-510H23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439075    GT:AD:DP:GQ:PL    0/1:4,2:6:61.26:61,0,150
6    125330128    rs36026279    G    C    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359704    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:71,0,62
6    125369362    rs72969686    C    T    641.83    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.546;DB;DP=59;Dels=0.0;FS=3.806;HRun=0;HaplotypeScore=0.9998;MQ=59.61;MQ0=0;MQRankSum=0.136;QD=10.88;ReadPosRankSum=0.601;SNPEFF_AMINO_ACID_CHANGE=A2V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_125369358_125369405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF217;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275184    GT:AD:DP:GQ:PL    0/1:36,22:59:99:672,0,1124
6    125569405    rs2273562    A    G    260.26    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=21;Dels=0.0;FS=6.043;HRun=0;HaplotypeScore=0.9997;MQ=57.06;MQ0=0;MQRankSum=0.833;QD=12.39;ReadPosRankSum=-0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304877    GT:AD:DP:GQ:PL    0/1:8,13:21:99:290,0,251
6    125575236    rs2064869    A    G    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532978    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
6    125583809    rs3799721    A    G    126.32    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=14.04;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304877    GT:AD:DP:GQ:PL    0/1:4,5:9:99:156,0,142
6    125597537    rs62432870    C    G    44.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318787    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:75,0,25
6    125598199    rs2243392    T    C    515.01    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.409;DB;DP=32;Dels=0.0;FS=2.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.487;QD=16.09;ReadPosRankSum=-0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318787    GT:AD:DP:GQ:PL    0/1:12,20:32:99:545,0,337
6    126072853    rs2875881    C    G    104.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.1;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368364    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,142
6    126075709    rs66999522    AT    A    167.95    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.119;DB;DP=42;FS=2.066;HRun=15;HaplotypeScore=279.5054;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=0.358;QD=4.0;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368364    GT:AD:DP:GQ:PL    0/1:24,16:42:99:207,0,122
6    126210395    rs6919947    T    G    769.21    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.851;DB;DP=56;Dels=0.0;FS=5.494;HRun=0;HaplotypeScore=0.6651;MQ=59.67;MQ0=0;MQRankSum=0.634;QD=13.74;ReadPosRankSum=-0.177;SNPEFF_AMINO_ACID_CHANGE=S197A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_126210118_126211127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413085    GT:AD:DP:GQ:PL    0/1:30,26:56:99:799,0,994
6    126211314    rs6903464    G    A    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413085    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    126243591    rs11154337    C    G    81.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.36;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229634    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:111,0,30
6    126248596    rs6918302    G    A    45.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.13;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229634    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:75,0,25
6    126249755    rs76258285    CT    C    169.91    QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=85;FS=3.857;HRun=15;HaplotypeScore=649.4862;IndelType=D;MQ=52.5;MQ0=0;MQRankSum=0.625;QD=1.98;ReadPosRankSum=-1.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433571    GT:AD:DP:GQ:PL    0/1:68,16:85:99:209,0,825
6    126288023    rs3757212    T    C    904.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229633    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:937,75,0
6    126319881    rs6569449    T    A    1715.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.15;MQ0=0;QD=35.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444121    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1749,129,0
6    126329304    rs1569737    G    A    35.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334379    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
6    126334041    rs2206941    G    A    1514.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=35.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450358    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1547,120,0
6    126669479    rs9401876    C    A    172.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPW;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368325    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:205,15,0
6    127471533    rs9491699    C    T    689.15    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.319;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.673;QD=20.27;ReadPosRankSum=0.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356698    GT:AD:DP:GQ:PL    0/1:13,21:34:99:719,0,437
6    127471791    rs3734626    C    T    444    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=36;Dels=0.0;FS=2.483;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=12.33;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356698    GT:AD:DP:GQ:PL    0/1:21,15:36:99:474,0,651
6    127476361    rs41285262    G    A    1928.42    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.679;DB;DP=120;Dels=0.0;FS=1.565;HRun=1;HaplotypeScore=4.5097;MQ=59.62;MQ0=0;MQRankSum=-0.551;QD=16.07;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356698    GT:AD:DP:GQ:PL    0/1:54,66:120:99:1958,0,1743
6    127476516    rs1892172    G    A    927.62    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.838;DB;DP=68;Dels=0.0;FS=3.075;HRun=0;HaplotypeScore=1.9336;MQ=59.32;MQ0=0;MQRankSum=0.12;QD=13.64;ReadPosRankSum=-1.116;SNPEFF_AMINO_ACID_CHANGE=L189;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_127476386_127476583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356698    GT:AD:DP:GQ:PL    0/1:38,30:68:99:958,0,1183
6    127636823    rs3798853    T    C    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474240    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
6    127663703    rs13207650    C    T    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309620    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
6    127765625    rs6906417    T    C    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0408;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487331    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    127768762    rs6902288    G    A    1739.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.22;SNPEFF_AMINO_ACID_CHANGE=N234;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_127767553_127768885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0408;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000483725    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1773,132,0
6    127768950    rs2236027    A    C    750.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368268    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:783,60,0
6    127770923    rs3818135    A    C    1561.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368268    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1594,117,0
6    127771452    rs3734447    T    G    1282.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.424;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.423;QD=27.89;ReadPosRankSum=1.193;SNPEFF_AMINO_ACID_CHANGE=S61R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_127771135_127771497;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0408;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000483725    GT:AD:DP:GQ:PL    1/1:1,45:46:62.69:1316,63,0
6    127794289    rs41285272    T    G    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368268    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
6    127796326    rs12194762    G    C    138.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=19.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368268    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:172,15,0
6    127835878    .    C    T    64.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=12.82;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467753    GT:AD:DP:GQ:PL    0/1:1,4:5:27.28:94,0,27
6    127836046    rs6925704    G    A    1343.39    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=5.436;DB;DP=97;Dels=0.0;FS=8.439;HRun=0;HaplotypeScore=4.4045;MQ=59.38;MQ0=0;MQRankSum=-0.886;QD=13.85;ReadPosRankSum=-1.552;SNPEFF_AMINO_ACID_CHANGE=A416;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_127835968_127836192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf174;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368268    GT:AD:DP:GQ:PL    0/1:45,52:97:99:1373,0,1235
6    127836502    rs677935    C    A    93.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467753    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:125,9,0
6    127836504    rs574385    G    A    92.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467753    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:124,9,0
6    128040676    rs11758347    A    G    68.49    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.037;QD=6.23;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEMIS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368248    GT:AD:DP:GQ:PL    0/1:7,4:11:98.49:98,0,256
6    128040839    rs675531    T    C    936.69    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.406;DB;DP=69;Dels=0.0;FS=4.79;HRun=0;HaplotypeScore=1.9321;MQ=59.67;MQ0=0;MQRankSum=-0.51;QD=13.58;ReadPosRankSum=0.03;SNPEFF_AMINO_ACID_CHANGE=I551V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_128040833_128040968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEMIS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368250    GT:AD:DP:GQ:PL    0/1:35,34:69:99:967,0,1139
6    128134685    rs10872326    C    G    633.08    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.823;DB;DP=68;Dels=0.0;FS=3.53;HRun=0;HaplotypeScore=0.734;MQ=59.04;MQ0=0;MQRankSum=-0.149;QD=9.31;ReadPosRankSum=-1.368;SNPEFF_AMINO_ACID_CHANGE=V288;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_128134028_128135076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEMIS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368250    GT:AD:DP:GQ:PL    0/1:42,26:68:99:663,0,1290
6    128176318    rs148069630    A    G    342.25    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=31;Dels=0.0;FS=7.141;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.426;QD=11.04;ReadPosRankSum=-0.994;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_6_128176175_128176333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEMIS;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000537166    GT:AD:DP:GQ:PL    0/1:19,12:31:99:372,0,685
6    128297986    rs4321844    G    T    1041.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    1/1:1,32:33:84.25:1075,84,0
6    128306769    rs6919966    C    T    174.77    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=15;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.099;QD=11.65;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:8,7:15:99:205,0,295
6    128312114    rs5879871    T    TAG    1338.86    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.63;DB;DP=49;FS=3.1;HRun=0;HaplotypeScore=126.649;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.39;QD=27.32;ReadPosRankSum=0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:24,25:49:99:1378,0,1012
6    128321318    rs74352259    C    CT    119.06    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.259;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=35.8373;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.614;QD=7.94;ReadPosRankSum=0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427676    GT:AD:DP:GQ:PL    0/1:8,6:15:99:158,0,147
6    128322437    rs34601789    T    C    277.40    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=18.49;ReadPosRankSum=-0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531466    GT:AD:DP:GQ:PL    0/1:4,11:15:99:307,0,128
6    128324241    rs717851    T    C    261.98    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.837;QD=13.79;ReadPosRankSum=-0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531466    GT:AD:DP:GQ:PL    0/1:9,10:19:99:292,0,319
6    128327031    rs45582334    A    G    116.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.6;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:3,4:7:63.82:146,0,64
6    128330249    rs9321104    T    C    552.10    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=37;Dels=0.0;FS=3.893;HRun=0;HaplotypeScore=2.1146;MQ=58.99;MQ0=0;MQRankSum=0.982;QD=14.92;ReadPosRankSum=-1.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:17,20:37:99:582,0,512
6    128385998    rs4897241    A    G    190.54    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=14.66;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:6,7:13:99:221,0,135
6    128388990    rs4897242    A    G    430.36    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.553;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.599;QD=15.37;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:13,15:28:99:460,0,425
6    128389074    rs4897243    T    C    98.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:3,4:7:91.14:129,0,91
6    128403745    rs17828130    A    G    386.10    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.268;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9989;MQ=59.34;MQ0=0;MQRankSum=0.811;QD=11.03;ReadPosRankSum=-2.5;SNPEFF_AMINO_ACID_CHANGE=V395;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_128403582_128403783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427676    GT:AD:DP:GQ:PL    0/1:16,19:35:99:416,0,511
6    128559400    rs74576664    A    T    153.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.573;QD=17.08;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:3,6:9:61.39:184,0,61
6    128812869    rs76361302    CTT    C    2240.49    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=7.196;DB;DP=100;FS=7.528;HRun=2;HaplotypeScore=336.7455;IndelType=D;MQ=60.58;MQ0=1;MQRankSum=0.898;QD=22.18;ReadPosRankSum=-0.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:47,54:100:99:2280,0,2534
6    128813085    rs17460940    C    T    538.33    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.322;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.34;MQ0=0;MQRankSum=0.038;QD=15.38;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:18,17:35:99:568,0,510
6    128840124    rs138959879    CG    C    376.41    PASS    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=3.432;DB;DP=42;FS=6.416;HRun=1;HaplotypeScore=120.6184;IndelType=D;MQ=59.71;MQ0=0;MQRankSum=1.331;QD=8.96;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368207    GT:AD:DP:GQ:PL    0/1:29,13:42:99:415,0,1217
6    129371106    rs1140366    C    T    760.04    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=14.07;ReadPosRankSum=2.099;SNPEFF_AMINO_ACID_CHANGE=I52;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_129371063_129371233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:29,25:54:99:790,0,935
6    129380843    rs143205326    C    CG    122.48    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=60.6031;IndelType=I;MQ=58.05;MQ0=0;MQRankSum=1.635;QD=10.21;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:7,5:12:99:162,0,258
6    129381026    rs4404787    C    A    944.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_AMINO_ACID_CHANGE=T127;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_129380929_129381041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:978,75,0
6    129478893    rs11752437    A    G    120.98    QDFilter2    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=0.161;DB;DP=68;Dels=0.0;FS=15.613;HRun=0;HaplotypeScore=3.9103;MQ=49.31;MQ0=1;MQRankSum=-5.562;QD=1.78;ReadPosRankSum=-0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:54,14:68:99:151,0,1832
6    129478911    rs11757127    G    C    348.68    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=2.259;DB;DP=78;Dels=0.0;FS=15.191;HRun=0;HaplotypeScore=2.6191;MQ=50.8;MQ0=0;MQRankSum=-3.777;QD=4.47;ReadPosRankSum=0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:60,18:78:99:379,0,2067
6    129478995    rs11757146    G    A    1677.72    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=4.045;DB;DP=165;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6196;MQ=48.35;MQ0=0;MQRankSum=-2.784;QD=10.17;ReadPosRankSum=-0.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:94,71:165:99:1708,0,2798
6    129479220    rs4080726    C    A    42.49    QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=0.785;DB;DP=76;Dels=0.0;FS=17.249;HRun=1;HaplotypeScore=1.57;MQ=51.19;MQ0=0;MQRankSum=-5.272;QD=0.56;ReadPosRankSum=1.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:63,13:76:72.48:72,0,1947
6    129479221    rs4080725    G    A    42.43    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=1.019;DB;DP=75;Dels=0.0;FS=17.068;HRun=0;HaplotypeScore=1.57;MQ=51.42;MQ0=0;MQRankSum=-5.375;QD=0.57;ReadPosRankSum=1.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:62,13:75:72.43:72,0,2001
6    129612624    rs1015846    C    T    82.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
6    129622055    rs902373    A    G    802.59    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.391;DB;DP=55;Dels=0.0;FS=3.232;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.801;QD=14.59;ReadPosRankSum=-1.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:26,29:55:99:833,0,860
6    129649350    rs55748488    C    T    472.37    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.049;QD=17.5;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:12,15:27:99:502,0,372
6    129670548    rs17057158    C    T    607.60    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=5.126;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.44;MQ0=0;MQRankSum=-0.717;QD=14.82;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:20,21:41:99:638,0,543
6    129691132    rs17057184    C    G    371    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.142;DB;DP=35;Dels=0.0;FS=2.026;HRun=0;HaplotypeScore=2.7352;MQ=59.34;MQ0=0;MQRankSum=0.532;QD=10.6;ReadPosRankSum=-0.921;SNPEFF_AMINO_ACID_CHANGE=T1652;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_129691037_129691135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:21,14:35:99:401,0,730
6    129762112    rs2297738    G    A    1082.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=34.91;SNPEFF_AMINO_ACID_CHANGE=T2079;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_129761961_129762143;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1115,84,0
6    129774456    rs9375628    G    T    412.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:445,33,0
6    129775470    rs2297742    T    C    398.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:431,33,0
6    129777382    rs1811970    C    T    457.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:490,36,0
6    129781097    rs10499158    G    A    90.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
6    129781192    rs10499159    C    A    538.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:571,42,0
6    129785282    rs2297741    G    A    246.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
6    129785391    rs1414736    T    C    1396.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1429,105,0
6    129799682    rs2784895    C    T    73.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,148
6    129800166    rs7741035    T    C    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:70,6,0
6    129802302    rs2275214    G    C    130.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=13.09;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:5,5:10:99:161,0,176
6    129802716    rs2571581    A    T    99.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=9.95;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:4,5:10:99:129,0,138
6    129802744    rs2571582    A    G    105.28    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:1,4:5:23.53:135,0,24
6    129807483    rs6569604    C    G    89.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=14.99;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:2,4:6:67.60:120,0,68
6    129807629    rs6569605    C    T    520.32    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.619;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=58.59;MQ0=0;MQRankSum=-0.283;QD=15.77;ReadPosRankSum=-0.396;SNPEFF_AMINO_ACID_CHANGE=A2586V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_129807619_129807767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:17,16:33:99:550,0,507
6    129807699    rs6569606    G    C    820.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.508;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9632;MQ=59.07;MQ0=0;MQRankSum=-0.954;QD=16.41;ReadPosRankSum=1.529;SNPEFF_AMINO_ACID_CHANGE=V2609;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_129807619_129807767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:20,30:50:99:850,0,598
6    129807714    rs2229850    G    A    493.38    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=0.351;DB;DP=51;Dels=0.0;FS=1.163;HRun=2;HaplotypeScore=1.933;MQ=59.55;MQ0=0;MQRankSum=-0.841;QD=9.67;ReadPosRankSum=-0.799;SNPEFF_AMINO_ACID_CHANGE=P2614;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_129807619_129807767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:31,20:51:99:523,0,893
6    129807869    rs6938825    C    A    139.81    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.736;QD=23.3;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:1,5:6:18.93:170,0,19
6    129813346    rs1889891    C    T    428.21    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.571;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.42;MQ0=0;MQRankSum=-1.297;QD=16.47;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:11,15:26:99:458,0,378
6    129813429    .    T    TA    1031.11    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.212;DP=73;FS=1.111;HRun=7;HaplotypeScore=184.4498;IndelType=I;MQ=61.03;MQ0=0;MQRankSum=0.112;QD=14.12;ReadPosRankSum=-0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:38,35:73:99:1070,0,768
6    129835814    rs2297740    G    A    759.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    1/1:0,23:23:63.16:792,63,0
6    129837167    .    A    ATCTT    885.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.871;DP=22;FS=0.0;HRun=0;HaplotypeScore=77.4816;IndelType=I;MQ=55.66;MQ0=0;MQRankSum=-0.735;QD=40.27;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354729    GT:AD:DP:GQ:PL    0/1:11,11:22:99:925,0,403
6    129837610    rs1049476    T    C    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443169    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
6    129905249    rs12197456    A    G    317.61    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.994;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=59.41;MQ0=0;MQRankSum=-0.313;QD=8.14;ReadPosRankSum=-0.402;SNPEFF_AMINO_ACID_CHANGE=V529;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_129905133_129905257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368149    GT:AD:DP:GQ:PL    0/1:26,13:39:99:348,0,886
6    129950394    rs4295498    A    C    221.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275189    GT:AD:DP:GQ:PL    1/1:0,10:10:18.06:255,18,0
6    129962931    rs56101591    C    A    284.52    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.769;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=1.94;QD=6.19;ReadPosRankSum=-1.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275189    GT:AD:DP:GQ:PL    0/1:28,18:46:99:315,0,891
6    130031215    rs3752536    T    C    793.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=T23A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_130031169_130031370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275189    GT:AD:DP:GQ:PL    1/1:0,25:25:60.20:827,60,0
6    130152440    rs9372948    C    T    679.81    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.17;MQ0=0;MQRankSum=1.714;QD=15.11;ReadPosRankSum=-0.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438392    GT:AD:DP:GQ:PL    0/1:23,22:45:99:710,0,689
6    130152452    rs9375666    G    A    732.76    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.173;DB;DP=50;Dels=0.0;FS=2.949;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.428;QD=14.66;ReadPosRankSum=1.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438392    GT:AD:DP:GQ:PL    0/1:27,23:50:99:763,0,799
6    130152479    rs7758540    T    C    605.67    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.706;DB;DP=60;Dels=0.0;FS=9.865;HRun=0;HaplotypeScore=0.5784;MQ=59.38;MQ0=0;MQRankSum=0.22;QD=10.09;ReadPosRankSum=-0.827;SNPEFF_AMINO_ACID_CHANGE=S124;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_130152389_130152531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    0/1:31,28:60:99:636,0,1061
6    130154667    rs9492393    T    C    3018.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_AMINO_ACID_CHANGE=E86G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_130154605_130154730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3052,241,0
6    130154686    rs4629709    A    G    2956.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_AMINO_ACID_CHANGE=F80L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_130154605_130154730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2989,235,0
6    130164764    rs9321190    G    A    4210.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=59.84;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    1/1:0,119:119:99:4211,313,0
6    130164856    rs9402185    C    T    1028.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    1/1:0,32:32:84.25:1062,84,0
6    130166699    rs9483065    G    A    108.11    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=18.02;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    0/1:1,5:6:25.60:138,0,26
6    130166774    rs9483066    T    C    370.12    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.758;QD=21.77;ReadPosRankSum=0.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    0/1:5,12:17:99:400,0,112
6    130166871    rs17475221    G    T    966.24    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.181;DB;DP=94;Dels=0.0;FS=3.76;HRun=2;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-1.221;QD=10.28;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    0/1:57,37:94:99:996,0,1790
6    130166908    rs17396809    T    G    1099.11    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.789;DB;DP=124;Dels=0.0;FS=2.583;HRun=0;HaplotypeScore=0.9987;MQ=59.81;MQ0=0;MQRankSum=-0.365;QD=8.86;ReadPosRankSum=-0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    0/1:78,46:124:99:1129,0,2334
6    130167026    rs9321192    G    C    1096.47    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.936;DB;DP=61;Dels=0.0;FS=2.82;HRun=0;HaplotypeScore=3.866;MQ=59.01;MQ0=0;MQRankSum=-0.067;QD=17.97;ReadPosRankSum=-1.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    0/1:23,38:61:99:1126,0,789
6    130167131    rs12189832    A    G    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.79;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368143    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,107
6    130370404    rs75575024    C    CCT    356.73    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.821;DB;DP=19;FS=6.662;HRun=0;HaplotypeScore=54.1532;IndelType=I;MQ=57.53;MQ0=0;MQRankSum=-0.489;QD=18.78;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361794    GT:AD:DP:GQ:PL    0/1:12,7:19:99:396,0,373
6    130371055    rs3890746    C    T    112.69    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=16.1;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361794    GT:AD:DP:GQ:PL    0/1:3,4:7:91.59:143,0,92
6    130374102    rs9388768    C    A    810.12    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.046;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.575;MQ=60.0;MQ0=0;MQRankSum=1.028;QD=15.58;ReadPosRankSum=-0.398;SNPEFF_AMINO_ACID_CHANGE=T158N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_130374004_130374136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368139    GT:AD:DP:GQ:PL    0/1:22,30:52:99:840,0,703
6    130381246    rs7451021    T    C    177.66    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=23;Dels=0.0;FS=16.246;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.058;QD=7.72;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=P250;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_130381181_130381285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368139    GT:AD:DP:GQ:PL    0/1:14,9:23:99:208,0,405
6    130407505    rs9402215    G    A    1095.15    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.411;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8801;MQ=59.67;MQ0=0;MQRankSum=-0.848;QD=15.87;ReadPosRankSum=0.981;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361794    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1125,0,1109
6    130460592    rs2068957    A    G    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368134    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
6    130460631    rs987836    G    A    293.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368134    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
6    130466076    .    C    A    147.58    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361794    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:178,0,21
6    130466413    rs4897369    G    A    491.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361794    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:524,39,0
6    130466676    rs4897370    A    G    114.29    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.86;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361794    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:144,0,26
6    130496883    rs13196169    G    T    401.80    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.806;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=13.39;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526886    GT:AD:DP:GQ:PL    0/1:14,16:30:99:432,0,489
6    130505374    rs41285310    A    C    352.05    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.482;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.324;QD=18.53;ReadPosRankSum=-1.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529723    GT:AD:DP:GQ:PL    0/1:6,13:19:99:382,0,192
6    130530815    rs1932100    C    T    335.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324172    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:368,30,0
6    130535420    rs4897377    G    A    1185.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324172    GT:AD:DP:GQ:PL    1/1:0,30:30:90.30:1219,90,0
6    130536494    rs66642481    AT    A    244.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=10;HaplotypeScore=44.5639;IndelType=D;MQ=60.0;MQ0=0;QD=17.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368134    GT:AD:DP:GQ:PL    1/1:3,11:14:32.99:287,33,0
6    130761798    rs3813360    T    C    859.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.299;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7845;MQ=58.74;MQ0=0;MQRankSum=0.903;QD=12.28;ReadPosRankSum=-1.664;SNPEFF_AMINO_ACID_CHANGE=A77;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_130761552_130764208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM200A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296978    GT:AD:DP:GQ:PL    0/1:42,28:70:99:890,0,1385
6    130761957    rs3813359    A    G    686.41    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.129;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4103;MQ=60.0;MQ0=0;MQRankSum=-0.443;QD=11.07;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=P130;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_130761552_130764208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM200A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296978    GT:AD:DP:GQ:PL    0/1:35,27:62:99:716,0,1107
6    131186578    rs7775013    T    G    407.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EPB41L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525198    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:440,33,0
6    131197990    rs7741462    T    C    1601.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EPB41L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257986    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1634,123,0
6    131211616    rs140909070    GA    G    446.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=15;HaplotypeScore=280.075;IndelType=D;MQ=55.62;MQ0=0;QD=8.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EPB41L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257986    GT:AD:DP:GQ:PL    1/1:13,30:52:83.88:488,84,0
6    131215271    rs4897473    C    T    153.29    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.55;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EPB41L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257986    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:183,0,24
6    131221902    rs2068147    T    C    285.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EPB41L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257986    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:319,24,0
6    131276466    rs66544757    GA    G    368.15    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=5.719;DB;DP=66;FS=7.0;HRun=9;HaplotypeScore=266.8834;IndelType=D;MQ=59.3;MQ0=0;MQRankSum=-0.7;QD=5.58;ReadPosRankSum=-1.846;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EPB41L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526983    GT:AD:DP:GQ:PL    0/1:46,20:66:99:407,0,938
6    131276945    rs2297853    G    T    165.33    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.386;QD=16.53;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EPB41L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526983    GT:AD:DP:GQ:PL    0/1:3,7:10:94.96:195,0,95
6    131277809    rs7771543    C    T    39.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EPB41L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257986    GT:AD:DP:GQ:PL    0/1:2,2:4:59.19:69,0,59
6    131481394    rs67922791    CA    C    698.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=57.0607;IndelType=D;MQ=58.78;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368123    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:741,57,0
6    131490472    rs1408027    T    C    525.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368123    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:558,42,0
6    131540726    rs3822866    A    T    601.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.995;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.191;QD=20.04;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263050    GT:AD:DP:GQ:PL    0/1:12,18:30:99:631,0,403
6    131900144    rs56325116    G    A    77.02    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=11.0;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356962    GT:AD:DP:GQ:PL    0/1:3,4:7:99:107,0,101
6    131900145    rs55706510    C    T    77.02    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=11.0;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356962    GT:AD:DP:GQ:PL    0/1:3,4:7:99:107,0,102
6    131903954    .    G    GAC    198.81    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DP=15;FS=0.0;HRun=0;HaplotypeScore=39.9233;IndelType=I;MQ=59.18;MQ0=0;MQRankSum=1.378;QD=13.25;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469293    GT:AD:DP:GQ:PL    0/1:9,5:15:99:238,0,177
6    131904704    rs75924806    G    GA    714.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=3;HaplotypeScore=73.3069;IndelType=I;MQ=60.6;MQ0=0;QD=39.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275196    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:757,54,0
6    131904719    rs17599586    C    T    292.47    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=18.28;ReadPosRankSum=0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275196    GT:AD:DP:GQ:PL    0/1:6,10:16:99:322,0,162
6    131911655    rs2608955    A    T    286.27    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=2.117;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=17.89;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:7,9:16:99:316,0,238
6    131917379    rs2608985    A    G    398.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.496;DB;DP=26;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.9967;MQ=59.11;MQ0=0;MQRankSum=-0.408;QD=15.33;ReadPosRankSum=0.136;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368053    GT:AD:DP:GQ:PL    0/1:13,13:26:99:429,0,409
6    131926334    rs2608953    C    T    213.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.67;MQ0=0;MQRankSum=-0.788;QD=13.33;ReadPosRankSum=-2.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:8,8:16:99:243,0,292
6    131929309    rs139450469    A    AC    249.60    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.674;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=46.77;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.702;QD=11.89;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:13,8:21:99:289,0,352
6    131931092    rs2245133    T    C    113.69    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=12.63;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:3,5:9:99:144,0,107
6    131936324    rs139719926    GTTT    G    478.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.215;DB;DP=26;FS=3.188;HRun=6;HaplotypeScore=98.3508;IndelType=D;MQ=57.67;MQ0=0;MQRankSum=0.136;QD=18.4;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:13,13:26:99:517,0,741
6    131940890    rs2297638    A    C    229.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.733;QD=11.48;ReadPosRankSum=-1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:12,8:20:99:260,0,435
6    131948469    rs141536700    GA    G    454.01    PASS    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.535;DB;DP=148;FS=3.027;HRun=17;HaplotypeScore=1215.6956;IndelType=D;MQ=51.43;MQ0=0;MQRankSum=2.192;QD=3.07;ReadPosRankSum=2.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:106,23:148:99:493,0,788
6    131948486    .    AG    A    326.64    QDFilter2    AB=0.861;AC=1;AF=0.50;AN=2;BaseQRankSum=4.923;DP=173;FS=21.287;HRun=1;HaplotypeScore=1322.4075;IndelType=D;MQ=52.46;MQ0=0;MQRankSum=-1.982;QD=1.89;ReadPosRankSum=2.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:145,28:173:99:366,0,1475
6    131948816    rs72156920    T    TAAA    534.96    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=2.624;DB;DP=62;FS=1.511;HRun=14;HaplotypeScore=364.0863;IndelType=I;MQ=54.84;MQ0=0;MQRankSum=0.198;QD=8.63;ReadPosRankSum=-2.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354577    GT:AD:DP:GQ:PL    0/1:42,10:62:99:574,0,595
6    131958485    rs9375819    A    C    1787.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358229    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1820,132,0
6    131973932    rs3765562    C    G    694.06    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.33;DB;DP=53;Dels=0.0;FS=4.289;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.0;QD=13.1;ReadPosRankSum=-0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423831    GT:AD:DP:GQ:PL    0/1:28,25:53:99:724,0,931
6    131979652    rs9483311    C    T    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357639    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    131995209    rs6930385    T    C    104.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.06;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357639    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,145
6    131995313    rs9493048    A    G    469.71    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=33;Dels=0.0;FS=6.036;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=14.23;ReadPosRankSum=-0.601;SNPEFF_AMINO_ACID_CHANGE=P184;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_131995302_131995550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427148    GT:AD:DP:GQ:PL    0/1:14,19:33:99:500,0,443
6    131997798    rs2286453    A    C    116.73    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=8.34;ReadPosRankSum=-0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470930    GT:AD:DP:GQ:PL    0/1:9,5:14:99:147,0,329
6    132014885    rs3213694    G    T    299.32    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.449;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.122;QD=15.75;ReadPosRankSum=-1.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357639    GT:AD:DP:GQ:PL    0/1:9,10:19:99:329,0,311
6    132022419    .    G    A    453.97    MQFilter40    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=4.063;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.27;MQ0=81;MQRankSum=-0.18;QD=4.02;ReadPosRankSum=-0.62;SNPEFF_AMINO_ACID_CHANGE=N41;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_132021520_132022635;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315453    GT:AD:DP:GQ:PL    0/1:70,43:113:99:484,0,329
6    132030560    .    G    A    144.99    MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=5.015;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.63;MQ0=202;MQRankSum=0.041;QD=0.58;ReadPosRankSum=-0.929;SNPEFF_AMINO_ACID_CHANGE=T533M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_132029581_132032206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314099    GT:AD:DP:GQ:PL    0/1:201,49:250:99:175,0,156
6    132030966    .    G    C    770.27    MQFilter40    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.183;DP=222;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=18.39;MQ0=129;MQRankSum=-0.859;QD=3.47;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=L398V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_132029581_132032206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314099    GT:AD:DP:GQ:PL    0/1:158,64:222:99:800,0,1092
6    132043349    rs378697    A    T    1182.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357639    GT:AD:DP:GQ:PL    1/1:0,37:37:90.29:1215,90,0
6    132059193    rs184208048    T    C    408.78    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.943;DB;DP=30;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.153;QD=13.63;ReadPosRankSum=-0.504;SNPEFF_AMINO_ACID_CHANGE=S730;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_132059171_132059303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENPP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357639    GT:AD:DP:GQ:PL    0/1:13,16:30:99:439,0,421
6    132148353    rs1830971    A    G    985.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360971    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:1018,81,0
6    132211747    rs147396850    C    T    64.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.68;ReadPosRankSum=0.988;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360971    GT:AD:DP:GQ:PL    0/1:3,3:6:73.25:94,0,73
6    132271689    rs45488997    G    A    420.73    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=1.569;QD=15.58;ReadPosRankSum=-0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367976    GT:AD:DP:GQ:PL    0/1:13,14:27:99:451,0,429
6    132641610    rs12661559    C    T    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.63;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336749    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:69,0,72
6    132641675    rs599660    T    C    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336749    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    132641888    rs598762    C    T    138.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=9.21;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336749    GT:AD:DP:GQ:PL    0/1:10,5:15:99:168,0,334
6    132644035    rs604196    G    A    663.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336749    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:697,51,0
6    132713607    rs56336490    A    G    64.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=7.2;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367963    GT:AD:DP:GQ:PL    0/1:6,3:9:94.79:95,0,217
6    132785224    rs3757299    A    C    2254.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=59.66;MQ0=0;MQRankSum=1.681;QD=33.15;ReadPosRankSum=1.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309255    GT:AD:DP:GQ:PL    1/1:1,67:68:99:2287,175,0
6    132859609    rs2842899    T    A    501.27    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=52;Dels=0.0;FS=11.221;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.75;QD=9.64;ReadPosRankSum=1.919;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=TAAR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434551    GT:AD:DP:GQ:PL    0/1:32,19:52:99:531,0,975
6    132859770    rs36112096    C    T    981.37    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=60;Dels=0.0;FS=2.197;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.41;QD=16.36;ReadPosRankSum=1.529;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=TAAR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434551    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1011,0,771
6    132909617    rs7763067    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAAR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258034    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
6    132910612    rs3813355    G    A    2473.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=36.91;SNPEFF_AMINO_ACID_CHANGE=L72;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_132909731_132910877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAAR5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258034    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2506,196,0
6    132945531    rs114717943    G    A    44.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAAR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367931    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:74,0,20
6    132966043    rs9375907    G    T    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.82;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275216    GT:AD:DP:GQ:PL    0/1:2,2:4:60.74:69,0,61
6    132966279    rs8192620    T    C    1037.59    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.028;DB;DP=61;Dels=0.0;FS=1.001;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=17.01;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=V288;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_132966123_132967142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275216    GT:AD:DP:GQ:PL    0/1:26,35:61:99:1068,0,822
6    132966348    rs8192619    G    A    1027.52    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.901;DB;DP=82;Dels=0.0;FS=0.83;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=0.369;QD=12.53;ReadPosRankSum=1.079;SNPEFF_AMINO_ACID_CHANGE=C265;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_132966123_132967142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275216    GT:AD:DP:GQ:PL    0/1:46,36:82:99:1058,0,1461
6    132967371    rs4897595    G    A    38.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275216    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:68,0,34
6    133014101    rs67375926    GT    G    61.33    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=44.9219;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=0.103;QD=6.13;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367928    GT:AD:DP:GQ:PL    0/1:5,5:10:99:100,0,117
6    133014991    rs909975    G    A    178.44    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.22;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367928    GT:AD:DP:GQ:PL    0/1:5,6:11:99:208,0,144
6    133015271    rs2272996    T    C    805.65    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=12.79;ReadPosRankSum=0.779;SNPEFF_AMINO_ACID_CHANGE=N131S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133015129_133015321;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367928    GT:AD:DP:GQ:PL    0/1:34,29:63:99:836,0,1077
6    133035098    rs2294757    G    A    702.13    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.814;QD=14.33;ReadPosRankSum=-0.959;SNPEFF_AMINO_ACID_CHANGE=T26I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133034965_133035188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367928    GT:AD:DP:GQ:PL    0/1:25,24:49:99:732,0,812
6    133045812    rs2294758    G    A    1598.83    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=114;Dels=0.0;FS=1.783;HRun=0;HaplotypeScore=1.4725;MQ=59.8;MQ0=0;MQRankSum=-1.541;QD=14.02;ReadPosRankSum=0.93;SNPEFF_AMINO_ACID_CHANGE=T378I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133045745_133046118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000207771    GT:AD:DP:GQ:PL    0/1:61,53:114:99:1629,0,2102
6    133045902    rs2294759    A    G    1858.68    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=3.128;DB;DP=167;Dels=0.0;FS=1.932;HRun=1;HaplotypeScore=1.5616;MQ=60.0;MQ0=0;MQRankSum=-3.144;QD=11.13;ReadPosRankSum=0.856;SNPEFF_AMINO_ACID_CHANGE=F348S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133045745_133046118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000207771    GT:AD:DP:GQ:PL    0/1:98,69:167:99:1889,0,3047
6    133048213    rs9493417    G    A    133.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=13.34;ReadPosRankSum=-1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392394    GT:AD:DP:GQ:PL    0/1:4,6:10:99:163,0,131
6    133052616    rs4895943    C    T    485.82    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.16;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=13.5;ReadPosRankSum=1.348;SNPEFF_AMINO_ACID_CHANGE=C132Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133052514_133052666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392393    GT:AD:DP:GQ:PL    0/1:21,15:36:99:516,0,610
6    133055170    rs6942306    C    A    69.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.43;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207771    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:100,0,29
6    133055236    rs6899733    G    A    250.59    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=17.9;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207771    GT:AD:DP:GQ:PL    0/1:5,9:14:99:281,0,166
6    133055610    rs764262    G    T    855.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.257;DB;DP=62;Dels=0.02;FS=1.037;HRun=0;HaplotypeScore=4.7904;MQ=58.89;MQ0=0;MQRankSum=-1.021;QD=13.58;ReadPosRankSum=1.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207771    GT:AD:DP:GQ:PL    0/1:31,31:62:99:885,0,978
6    133055612    rs764263    G    C    865.57    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=61;Dels=0.0;FS=1.05;HRun=0;HaplotypeScore=4.7904;MQ=58.86;MQ0=0;MQRankSum=0.829;QD=14.19;ReadPosRankSum=1.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207771    GT:AD:DP:GQ:PL    0/1:29,32:61:99:896,0,881
6    133055720    .    G    A    810.20    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.054;DP=58;Dels=0.0;FS=8.363;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.579;QD=13.97;ReadPosRankSum=-0.226;SNPEFF_AMINO_ACID_CHANGE=P38S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133055619_133055904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VNN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000207771    GT:AD:DP:GQ:PL    0/1:28,30:58:99:840,0,864
6    133070995    rs4895944    G    T    1066.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=L183M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133070834_133071004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VNN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525289    GT:AD:DP:GQ:PL    1/1:0,31:31:84.21:1099,84,0
6    133072650    rs1883617    A    G    907.18    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.145;DB;DP=51;Dels=0.0;FS=4.617;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.415;QD=17.79;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=G225;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133072284_133072657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VNN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525270    GT:AD:DP:GQ:PL    0/1:21,30:51:99:937,0,532
6    133073486    rs34784326    G    T    91.96    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=8.36;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524919    GT:AD:DP:GQ:PL    0/1:4,7:11:99:122,0,125
6    133073487    rs35980060    A    T    91.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=7.66;ReadPosRankSum=-1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524919    GT:AD:DP:GQ:PL    0/1:4,8:12:99:122,0,128
6    133077063    rs1883613    T    C    251.23    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.655;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.838;QD=8.1;ReadPosRankSum=1.12;SNPEFF_AMINO_ACID_CHANGE=T152;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133076982_133077174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VNN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326499    GT:AD:DP:GQ:PL    0/1:21,10:31:99:281,0,639
6    133079136    rs3901670    A    T    120.86    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9789;MQ=57.05;MQ0=0;MQRankSum=-0.956;QD=15.11;ReadPosRankSum=-0.956;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_133078810_133079147;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=VNN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326499    GT:AD:DP:GQ:PL    0/1:3,5:8:93.27:151,0,93
6    133135974    rs41286196    G    A    706.46    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.11;MQ0=0;MQRankSum=0.619;QD=14.42;ReadPosRankSum=0.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230050    GT:AD:DP:GQ:PL    0/1:23,26:49:99:736,0,763
6    133789728    rs9493627    G    A    829.31    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.494;DB;DP=58;Dels=0.0;FS=2.332;HRun=0;HaplotypeScore=1.841;MQ=59.6;MQ0=0;MQRankSum=1.862;QD=14.3;ReadPosRankSum=0.313;SNPEFF_AMINO_ACID_CHANGE=G223S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_133789704_133789887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430974    GT:AD:DP:GQ:PL    0/1:26,32:58:99:859,0,866
6    133803011    rs212772    C    G    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355167    GT:AD:DP:GQ:PL    0/1:2,2:4:58.45:67,0,58
6    133827148    rs6929656    T    C    280.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7219;MQ=60.0;MQ0=0;MQRankSum=-1.082;QD=11.23;ReadPosRankSum=1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355167    GT:AD:DP:GQ:PL    0/1:15,10:25:99:311,0,534
6    133827354    rs2277083    A    G    528.57    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.552;DB;DP=41;Dels=0.0;FS=3.118;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.117;QD=12.89;ReadPosRankSum=-0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355167    GT:AD:DP:GQ:PL    0/1:21,20:41:99:559,0,735
6    133836330    rs3777887    C    T    406.94    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.14;MQ0=0;MQRankSum=-0.797;QD=15.07;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531861    GT:AD:DP:GQ:PL    0/1:13,14:27:99:437,0,433
6    133844137    rs41286206    C    A    369.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.231;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.14;QD=20.53;ReadPosRankSum=-1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355167    GT:AD:DP:GQ:PL    0/1:6,12:18:99:400,0,204
6    133849789    rs3822939    A    G    857.24    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.601;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=1.288;QD=11.58;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355167    GT:AD:DP:GQ:PL    0/1:39,35:74:99:887,0,1245
6    134305494    rs2273097    A    G    750.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275230    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:784,57,0
6    134493149    .    A    AG    330.10    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DP=21;FS=0.0;HRun=2;HaplotypeScore=41.384;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=15.72;ReadPosRankSum=0.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461976    GT:AD:DP:GQ:PL    0/1:11,10:21:99:369,0,344
6    134493397    rs1057293    G    A    1532.41    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DB;DP=101;Dels=0.0;FS=0.802;HRun=2;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-1.347;QD=15.17;ReadPosRankSum=-0.402;SNPEFF_AMINO_ACID_CHANGE=D196;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_134493331_134493454;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000475719    GT:AD:DP:GQ:PL    0/1:50,51:101:99:1562,0,1497
6    134493947    rs1743966    A    G    233.99    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.286;QD=10.64;ReadPosRankSum=-0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461976    GT:AD:DP:GQ:PL    0/1:10,12:22:99:264,0,349
6    134494548    rs1743965    C    T    2326.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=38.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461976    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2359,175,0
6    134495291    rs3215438    T    TC    428.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=54.2386;IndelType=I;MQ=59.03;MQ0=0;MQRankSum=-0.606;QD=17.86;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237305    GT:AD:DP:GQ:PL    0/1:12,12:23:99:468,0,395
6    134496112    rs1743964    G    A    124.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367858    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
6    135250530    rs2064101    G    A    70.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265605    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:102,9,0
6    135260303    rs7754722    T    C    1237.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534012    GT:AD:DP:GQ:PL    1/1:0,31:31:93.29:1270,93,0
6    135287346    rs138764591    G    C    129    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=11.73;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367824    GT:AD:DP:GQ:PL    0/1:6,5:11:99:159,0,215
6    135511108    rs210796    A    T    594.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237302    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:627,51,0
6    135511504    rs41287046    A    T    188.10    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.209;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=8.96;ReadPosRankSum=2.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237302    GT:AD:DP:GQ:PL    0/1:13,8:21:99:218,0,444
6    135514829    rs55703634    TA    T    241.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=25.6035;IndelType=D;MQ=59.27;MQ0=0;QD=26.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237302    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:284,24,0
6    135522682    rs7757388    A    G    158.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534736    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
6    135522939    rs743589    T    C    458.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=28.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534736    GT:AD:DP:GQ:PL    1/1:0,16:16:45.08:492,45,0
6    135524516    rs9385719    A    G    749.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.9933;MQ=55.09;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237302    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:782,60,0
6    135524520    rs56386066    T    TTGG    511.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=177.8534;IndelType=I;MQ=56.74;MQ0=0;QD=23.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237302    GT:AD:DP:GQ:PL    1/1:12,10:22:30.10:554,30,0
6    135524553    rs9402696    C    T    324.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237302    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:358,27,0
6    135639644    rs6914831    C    T    177.29    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.71;QD=12.66;ReadPosRankSum=0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265602    GT:AD:DP:GQ:PL    0/1:8,6:14:99:207,0,237
6    135748200    rs2757639    A    G    711.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265602    GT:AD:DP:GQ:PL    1/1:0,19:19:57.16:744,57,0
6    135752608    rs2614270    T    C    399.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265602    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:432,33,0
6    135754471    rs737561    C    T    336.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265602    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:370,27,0
6    135763585    rs2614274    T    C    559.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265602    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:592,45,0
6    135763866    rs2757645    G    A    1372.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265602    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1406,102,0
6    135786737    rs2757651    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265602    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
6    135813251    rs9402709    G    T    128.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531527    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    136172996    rs71903387    C    CT    241.48    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=28;FS=3.388;HRun=13;HaplotypeScore=198.7888;IndelType=I;MQ=55.49;MQ0=0;MQRankSum=0.116;QD=8.62;ReadPosRankSum=-1.159;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_136172834_136173157;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308191    GT:AD:DP:GQ:PL    0/1:15,13:28:99:281,0,150
6    136359446    rs9376173    A    C    160.84    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.555;QD=10.72;ReadPosRankSum=-0.872;SNPEFF_AMINO_ACID_CHANGE=R90;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136359177_136359666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367787    GT:AD:DP:GQ:PL    0/1:7,8:15:99:191,0,248
6    136472185    rs77310823    G    GA    110.63    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=13;FS=0.0;HRun=6;HaplotypeScore=27.6822;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=0.271;QD=8.51;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308191    GT:AD:DP:GQ:PL    0/1:8,5:13:99:150,0,203
6    136472439    rs4896201    G    A    214.95    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.637;QD=14.33;ReadPosRankSum=-0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308191    GT:AD:DP:GQ:PL    0/1:8,7:15:99:245,0,290
6    136472496    rs4896202    T    G    55.42    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=5.54;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308191    GT:AD:DP:GQ:PL    0/1:7,3:10:85.42:85,0,237
6    136582092    rs62431280    C    A    90.64    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.48;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.17;MQ0=0;MQRankSum=-1.362;QD=3.63;ReadPosRankSum=-0.999;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392348    GT:AD:DP:GQ:PL    0/1:18,7:25:99:121,0,693
6    136582113    rs62431281    A    C    149.25    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.964;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.75;MQ0=0;MQRankSum=-1.314;QD=3.55;ReadPosRankSum=0.753;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392348    GT:AD:DP:GQ:PL    0/1:32,10:42:99:179,0,1216
6    136582194    .    T    TAAA    1686.71    PASS    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=8.279;DP=144;FS=0.916;HRun=8;HaplotypeScore=812.1229;IndelType=I;MQ=54.88;MQ0=0;MQRankSum=-3.205;QD=11.55;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392348    GT:AD:DP:GQ:PL    0/1:110,31:144:99:1726,0,3133
6    136582203    rs74299323    T    C    35.27    HaplotypeScoreFilter13;QDFilter2    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.962;DB;DP=154;Dels=0.0;FS=0.837;HRun=0;HaplotypeScore=40.8889;MQ=54.67;MQ0=0;MQRankSum=-4.368;QD=0.23;ReadPosRankSum=0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392348    GT:AD:DP:GQ:PL    0/1:110,43:154:65.27:65,0,3596
6    136582417    rs62431283    G    A    519.32    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=2.791;DB;DP=127;Dels=0.0;FS=0.757;HRun=0;HaplotypeScore=1.3302;MQ=54.34;MQ0=1;MQRankSum=-4.478;QD=4.09;ReadPosRankSum=-4.023;SNPEFF_AMINO_ACID_CHANGE=R133C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136582403_136582615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000031135    GT:AD:DP:GQ:PL    0/1:89,38:127:99:549,0,2815
6    136582497    rs62431284    G    T    2390.83    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=214;Dels=0.0;FS=0.507;HRun=1;HaplotypeScore=2.5395;MQ=52.67;MQ0=0;MQRankSum=-5.923;QD=11.17;ReadPosRankSum=-1.16;SNPEFF_AMINO_ACID_CHANGE=T106N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136582403_136582615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000031135    GT:AD:DP:GQ:PL    0/1:117,97:214:99:2421,0,3658
6    136589425    rs77081633    G    T    405.48    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=95;Dels=0.0;FS=3.334;HRun=1;HaplotypeScore=1.2434;MQ=49.65;MQ0=0;MQRankSum=-5.057;QD=4.27;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=P585T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136589300_136589477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530767    GT:AD:DP:GQ:PL    0/1:71,23:95:99:435,0,2356
6    136590613    rs62431285    T    C    313.37    PASS    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.416;DB;DP=106;Dels=0.0;FS=0.945;HRun=0;HaplotypeScore=1.891;MQ=56.29;MQ0=0;MQRankSum=-4.843;QD=2.96;ReadPosRankSum=0.681;SNPEFF_AMINO_ACID_CHANGE=P554;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136590575_136590750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530767    GT:AD:DP:GQ:PL    0/1:86,20:106:99:343,0,2539
6    136590640    rs62431286    A    C    474.37    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=4.247;DB;DP=92;Dels=0.0;FS=3.36;HRun=2;HaplotypeScore=0.9832;MQ=55.48;MQ0=0;MQRankSum=-5.087;QD=5.16;ReadPosRankSum=2.468;SNPEFF_AMINO_ACID_CHANGE=S545R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136590575_136590750;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530767    GT:AD:DP:GQ:PL    0/1:68,24:92:99:504,0,2129
6    136590698    rs62431287    C    T    272.11    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=3.066;DB;DP=66;Dels=0.0;FS=14.516;HRun=0;HaplotypeScore=0.9967;MQ=56.39;MQ0=0;MQRankSum=-3.662;QD=4.12;ReadPosRankSum=3.019;SNPEFF_AMINO_ACID_CHANGE=R526H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136590575_136590750;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530767    GT:AD:DP:GQ:PL    0/1:52,14:66:99:302,0,1587
6    136590712    rs62431288    C    T    245.91    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.807;DB;DP=55;Dels=0.0;FS=5.143;HRun=0;HaplotypeScore=1.9772;MQ=56.09;MQ0=0;MQRankSum=-3.565;QD=4.47;ReadPosRankSum=-0.106;SNPEFF_AMINO_ACID_CHANGE=R521;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136590575_136590750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530767    GT:AD:DP:GQ:PL    0/1:41,14:55:99:276,0,1442
6    136597004    rs7762367    A    G    134.80    QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.072;DB;DP=100;Dels=0.0;FS=1.041;HRun=2;HaplotypeScore=2.5802;MQ=57.34;MQ0=1;MQRankSum=-2.041;QD=1.35;ReadPosRankSum=-0.912;SNPEFF_AMINO_ACID_CHANGE=P380;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136596981_136597127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530767    GT:AD:DP:GQ:PL    0/1:78,22:100:99:165,0,2613
6    136597262    rs1967444    T    C    2157.28    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=150;Dels=0.0;FS=8.924;HRun=1;HaplotypeScore=0.9894;MQ=58.23;MQ0=0;MQRankSum=-0.928;QD=14.38;ReadPosRankSum=-0.886;SNPEFF_AMINO_ACID_CHANGE=V465;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136596981_136597646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:77,73:150:99:2187,0,2484
6    136597281    rs1967445    A    T    2264.91    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.423;DB;DP=153;Dels=0.0;FS=2.056;HRun=0;HaplotypeScore=1.9315;MQ=58.31;MQ0=0;MQRankSum=1.316;QD=14.8;ReadPosRankSum=1.22;SNPEFF_AMINO_ACID_CHANGE=L459H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136596981_136597646;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:80,72:153:99:2295,0,2553
6    136597288    rs1967446    A    C    2270.95    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=3.563;DB;DP=158;Dels=0.0;FS=0.601;HRun=0;HaplotypeScore=2.5432;MQ=58.21;MQ0=0;MQRankSum=1.049;QD=14.37;ReadPosRankSum=0.701;SNPEFF_AMINO_ACID_CHANGE=Y457D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136596981_136597646;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:80,78:158:99:2301,0,2452
6    136598895    rs78574027    T    TA    352.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=5;HaplotypeScore=18.5878;IndelType=I;MQ=58.11;MQ0=0;QD=35.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528229    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
6    136599393    rs6940018    G    C    1254.39    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=112;Dels=0.0;FS=2.543;HRun=0;HaplotypeScore=3.9029;MQ=59.9;MQ0=0;MQRankSum=-0.476;QD=11.2;ReadPosRankSum=0.877;SNPEFF_AMINO_ACID_CHANGE=S207C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136599003_136599908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:66,46:112:99:1284,0,2130
6    136599404    rs6919254    T    C    1368.94    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=0.169;DB;DP=122;Dels=0.0;FS=4.731;HRun=0;HaplotypeScore=0.9995;MQ=59.72;MQ0=0;MQRankSum=1.141;QD=11.22;ReadPosRankSum=0.379;SNPEFF_AMINO_ACID_CHANGE=S203;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136599003_136599908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:69,53:122:99:1399,0,2213
6    136599775    rs138954237    G    C    550.58    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.441;DB;DP=99;Dels=0.0;FS=3.242;HRun=0;HaplotypeScore=3.7446;MQ=56.6;MQ0=0;MQRankSum=-1.126;QD=5.56;ReadPosRankSum=-1.571;SNPEFF_AMINO_ACID_CHANGE=Q80E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136599003_136599908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:73,26:99:99:581,0,2446
6    136599822    rs9942517    C    G    937.03    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.185;DB;DP=70;Dels=0.0;FS=3.388;HRun=0;HaplotypeScore=1.6208;MQ=55.62;MQ0=0;MQRankSum=-1.692;QD=13.39;ReadPosRankSum=2.01;SNPEFF_AMINO_ACID_CHANGE=G64A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136599003_136599908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:38,32:70:99:967,0,1330
6    136599836    rs9942518    G    A    840.18    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.763;DB;DP=61;Dels=0.0;FS=2.256;HRun=0;HaplotypeScore=0.8321;MQ=55.35;MQ0=0;MQRankSum=-3.993;QD=13.77;ReadPosRankSum=2.052;SNPEFF_AMINO_ACID_CHANGE=Y59;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136599003_136599908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:32,28:61:99:870,0,1056
6    136599842    rs9942519    G    A    811.85    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.91;DB;DP=57;Dels=0.0;FS=1.058;HRun=0;HaplotypeScore=0.0;MQ=55.01;MQ0=0;MQRankSum=-1.303;QD=14.24;ReadPosRankSum=1.478;SNPEFF_AMINO_ACID_CHANGE=R57;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136599003_136599908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:30,27:57:99:842,0,897
6    136600949    rs149618892    G    A    31.58    QDFilter2    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.837;DB;DP=54;Dels=0.0;FS=4.41;HRun=1;HaplotypeScore=0.0;MQ=56.66;MQ0=1;MQRankSum=-3.636;QD=0.57;ReadPosRankSum=1.78;SNPEFF_AMINO_ACID_CHANGE=S19F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136600901_136601014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCLAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353331    GT:AD:DP:GQ:PL    0/1:49,5:54:61.57:62,0,1592
6    136682172    rs2076190    G    A    128.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=21.35;SNPEFF_AMINO_ACID_CHANGE=R412W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136682143_136682317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432797    GT:AD:DP:GQ:PL    1/1:0,6:6:15:161,15,0
6    136710669    rs11390499    TA    T    30.17    QDFilter2    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=86;FS=0.0;HRun=15;HaplotypeScore=566.208;IndelType=D;MQ=53.17;MQ0=0;MQRankSum=-0.575;QD=0.35;ReadPosRankSum=-0.763;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345567    GT:AD:DP:GQ:PL    0/1:66,14:86:69.19:69,0,950
6    136963890    rs9376219    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355845    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    136977568    rs2076260    T    C    1840.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.199;DB;DP=128;Dels=0.0;FS=0.665;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=1.125;QD=14.38;ReadPosRankSum=-1.832;SNPEFF_AMINO_ACID_CHANGE=L519;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_136977445_136977598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359015    GT:AD:DP:GQ:PL    0/1:64,64:128:99:1871,0,1891
6    136990283    rs3765259    T    C    254.73    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.674;QD=13.41;ReadPosRankSum=-1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359015    GT:AD:DP:GQ:PL    0/1:10,9:19:99:285,0,332
6    137026266    rs9321567    T    G    471.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=4.255;DB;DP=36;Dels=0.0;FS=3.009;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=13.1;ReadPosRankSum=-0.381;SNPEFF_AMINO_ACID_CHANGE=I198;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_137026248_137026271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359015    GT:AD:DP:GQ:PL    0/1:20,16:36:99:501,0,529
6    137041833    rs1321477    C    T    141.35    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=10.87;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359015    GT:AD:DP:GQ:PL    0/1:8,5:13:99:171,0,245
6    137112633    rs3734552    A    G    102.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.08;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359015    GT:AD:DP:GQ:PL    0/1:2,4:6:61.17:133,0,61
6    137113137    rs55666429    G    A    190.55    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.663;QD=17.32;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S133;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_137112848_137113656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367768    GT:AD:DP:GQ:PL    0/1:4,7:11:99:221,0,116
6    137166682    rs927181    G    A    281.70    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.836;QD=14.09;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318471    GT:AD:DP:GQ:PL    0/1:11,9:20:99:312,0,363
6    137323213    rs1342642    G    A    771.48    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=53;Dels=0.0;FS=1.05;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=14.56;ReadPosRankSum=0.055;SNPEFF_AMINO_ACID_CHANGE=L271F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_137321108_137323492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367748    GT:AD:DP:GQ:PL    0/1:26,27:53:99:801,0,808
6    137325847    rs1555498    C    T    3652.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=V148I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_137325758_137325897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367748    GT:AD:DP:GQ:PL    1/1:1,109:110:99:3653,277,0
6    137325901    rs111836268    TAA    T    863.22    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.668;DB;DP=128;FS=2.683;HRun=15;HaplotypeScore=939.6781;IndelType=D;MQ=56.65;MQ0=0;MQRankSum=0.026;QD=6.69;ReadPosRankSum=2.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367746    GT:AD:DP:GQ:PL    0/1:29,51:128:99:902,0,279
6    137326103    rs1626680    G    A    129.08    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.092;QD=9.93;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367746    GT:AD:DP:GQ:PL    0/1:8,5:13:99:159,0,246
6    137326148    rs1555499    G    A    195.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=32.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367746    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:228,18,0
6    137332745    rs771954    T    C    165.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316649    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:198,18,0
6    137337965    rs441011    C    A    273.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316649    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:306,24,0
6    137338276    rs433243    A    G    429.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316649    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:462,36,0
6    137338352    rs451371    G    T    159.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316649    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
6    137338357    rs442663    A    G    135.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL20RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316649    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:168,12,0
6    137466614    rs276466    A    G    67.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.49;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296980    GT:AD:DP:GQ:PL    0/1:2,3:5:66.25:97,0,66
6    137467031    rs139294225    C    G    182.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=22.76;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296980    GT:AD:DP:GQ:PL    0/1:2,6:8:57.47:212,0,57
6    137475858    rs7774349    T    C    217.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296980    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
6    137477823    rs2064501    C    T    789.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296980    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:823,60,0
6    137479629    rs28362851    T    C    766.99    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.666;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7319;MQ=59.29;MQ0=0;MQRankSum=-0.524;QD=13.0;ReadPosRankSum=-0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296980    GT:AD:DP:GQ:PL    0/1:33,26:59:99:797,0,987
6    137482795    rs28385693    A    G    265.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=12;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=22.16;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22RA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000296980    GT:AD:DP:GQ:PL    0/1:4,8:12:99:296,0,123
6    137519588    rs11914    A    C    656.73    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.338;DB;DP=51;Dels=0.0;FS=1.13;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.259;QD=12.63;ReadPosRankSum=-0.35;SNPEFF_AMINO_ACID_CHANGE=S322;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_137518969_137519776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNGR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543628    GT:AD:DP:GQ:PL    0/1:28,23:51:99:687,0,916
6    137524870    rs67051966    GAA    G    141.84    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=15;FS=4.15;HRun=14;HaplotypeScore=58.2421;IndelType=D;MQ=59.18;MQ0=0;MQRankSum=1.545;QD=9.46;ReadPosRankSum=0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414770    GT:AD:DP:GQ:PL    0/1:7,8:15:99:181,0,171
6    137536455    rs1327475    G    A    713.36    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=55;Dels=0.0;FS=5.456;HRun=4;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.827;QD=12.97;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=L2F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_137536404_137536514;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNGR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367735    GT:AD:DP:GQ:PL    0/1:27,28:55:99:743,0,792
6    137540370    rs7749390    A    G    103.78    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.246;QD=8.65;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367735    GT:AD:DP:GQ:PL    0/1:7,5:12:99:134,0,145
6    137540520    rs2234711    A    G    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.73;ReadPosRankSum=0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478333    GT:AD:DP:GQ:PL    0/1:3,3:6:70.36:70,0,93
6    137815375    rs11413104    T    TA    380.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=108.841;IndelType=I;MQ=57.79;MQ0=0;QD=15.84;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_137813336_137815531;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLIG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367734    GT:AD:DP:GQ:PL    1/1:7,16:24:44.91:422,45,0
6    138195961    rs71670547    TCTC    T    1223.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=114.444;IndelType=D;MQ=60.35;MQ0=0;QD=45.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421450    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1266,81,0
6    138197331    rs661561    A    C    982.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420009    GT:AD:DP:GQ:PL    1/1:0,30:30:78.22:1016,78,0
6    138199417    rs610604    G    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420009    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    138413269    rs648396    A    G    567.29    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=53;Dels=0.0;FS=1.072;HRun=0;HaplotypeScore=0.9967;MQ=59.13;MQ0=0;MQRankSum=-0.369;QD=10.7;ReadPosRankSum=-0.407;SNPEFF_AMINO_ACID_CHANGE=I146;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_138411926_138413405;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PERP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265603    GT:AD:DP:GQ:PL    0/1:29,23:53:99:597,0,976
6    138413333    rs648802    G    C    750.08    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.699;DB;DP=55;Dels=0.0;FS=2.316;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-0.062;QD=13.64;ReadPosRankSum=-0.418;SNPEFF_AMINO_ACID_CHANGE=P125R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_138411926_138413405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PERP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265603    GT:AD:DP:GQ:PL    0/1:27,28:55:99:780,0,817
6    138413610    rs563495    C    T    32.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.49;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PERP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265603    GT:AD:DP:GQ:PL    0/1:3,2:5:62.44:62,0,111
6    138417415    rs2484067    T    C    301.98    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=25;Dels=0.0;FS=4.853;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.348;QD=12.08;ReadPosRankSum=-1.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PERP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265603    GT:AD:DP:GQ:PL    0/1:12,13:25:99:332,0,341
6    138483373    rs118044713    C    T    65.02    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.13;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251691    GT:AD:DP:GQ:PL    0/1:5,3:8:95.01:95,0,175
6    138491673    rs78170431    G    A    118.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.83;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251691    GT:AD:DP:GQ:PL    0/1:2,4:6:61.26:149,0,61
6    138491807    rs116359974    G    A    328.11    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.548;QD=11.31;ReadPosRankSum=-0.636;SNPEFF_AMINO_ACID_CHANGE=G32S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_138491799_138491850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1244;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251691    GT:AD:DP:GQ:PL    0/1:16,13:29:99:358,0,561
6    138491854    rs74590195    G    A    262.12    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.183;DB;DP=38;Dels=0.0;FS=7.279;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.581;QD=6.9;ReadPosRankSum=-0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251691    GT:AD:DP:GQ:PL    0/1:26,12:38:99:292,0,849
6    138491896    rs116143200    A    G    230.95    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=0.804;DB;DP=37;Dels=0.0;FS=9.245;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.325;QD=6.24;ReadPosRankSum=-0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251691    GT:AD:DP:GQ:PL    0/1:27,10:37:99:261,0,807
6    138491996    rs115055274    G    A    99.31    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.03;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251691    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,184
6    138642082    rs112726680    CG    C    287.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=9;HaplotypeScore=29.6077;IndelType=D;MQ=60.0;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1244;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251691    GT:AD:DP:GQ:PL    1/1:0,12:12:36.02:330,36,0
6    138753337    rs2039121    C    T    128.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_AMINO_ACID_CHANGE=K715;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_138751530_138754817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343505    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
6    138754323    rs2327891    A    G    1033.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=L387;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_138751530_138754817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343505    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1067,81,0
6    138820324    rs10457670    A    G    62.08    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.46;MQ0=0;MQRankSum=-0.55;QD=7.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342260    GT:AD:DP:GQ:PL    0/1:5,3:8:92.08:92,0,143
6    138892814    rs41289797    T    C    1828.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468095    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1861,153,0
6    139134558    rs1919691    C    T    50.34    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.156;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.623;QD=3.6;ReadPosRankSum=-0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:11,3:14:80.33:80,0,406
6    139144693    .    C    T    735.18    MQFilter40    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=1.284;DP=79;Dels=0.0;FS=9.469;HRun=0;HaplotypeScore=0.6651;MQ=20.66;MQ0=32;MQRankSum=1.744;QD=9.31;ReadPosRankSum=0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:34,45:79:29.19:765,0,29
6    139159382    rs9321680    T    C    291.37    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=18.21;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:6,10:16:99:321,0,200
6    139167542    .    A    G    86.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=14.47;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:2,4:6:62.29:117,0,62
6    139167579    rs9399258    T    C    210.88    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.818;QD=21.09;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:3,7:10:90.17:241,0,90
6    139184044    rs1188827    C    G    51.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=17.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
6    139186074    rs1730387    T    C    304.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=25;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.86;QD=12.18;ReadPosRankSum=0.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:15,10:25:99:334,0,499
6    139202014    rs1157050    G    C    212.74    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=23.64;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:2,7:9:51.94:243,0,52
6    139207910    rs1188831    C    T    82.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=9.17;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:5,4:9:99:113,0,172
6    139229695    rs1188867    A    G    128.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.263;QD=8.05;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:8,8:16:99:159,0,295
6    139229743    rs1188868    C    T    787.05    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.014;DB;DP=44;Dels=0.0;FS=1.981;HRun=4;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.442;QD=17.89;ReadPosRankSum=1.229;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECT2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367682    GT:AD:DP:GQ:PL    0/1:18,26:44:99:817,0,617
6    139234163    rs1188862    C    T    143.85    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.98;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258062    GT:AD:DP:GQ:PL    0/1:3,5:8:77.15:174,0,77
6    139265279    rs1188898    C    T    81.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531675    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:111,0,29
6    139265882    rs1188897    T    A    113.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.26;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531675    GT:AD:DP:GQ:PL    0/1:3,4:7:99:144,0,102
6    139355580    rs6905593    A    T    74.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.59;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf115;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367660    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,142
6    139487394    rs7768941    T    C    1358.71    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=0.947;DB;DP=82;Dels=0.0;FS=0.915;HRun=1;HaplotypeScore=2.7871;MQ=59.72;MQ0=0;MQRankSum=0.053;QD=16.57;ReadPosRankSum=-0.928;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367658    GT:AD:DP:GQ:PL    0/1:32,50:82:99:1389,0,921
6    139487836    rs3173082    T    C    377.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.97;MQ0=0;QD=23.6;SNPEFF_AMINO_ACID_CHANGE=N229;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_139487421_139488461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367658    GT:AD:DP:GQ:PL    1/1:0,14:16:33.10:411,33,0
6    139495326    rs6570313    C    T    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367658    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
6    139498349    .    A    G    109.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.19;ReadPosRankSum=-1.38;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367658    GT:AD:DP:GQ:PL    0/1:2,4:6:65.93:139,0,66
6    139563914    rs9495391    C    G    1338.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DB;DP=44;Dels=0.0;FS=3.547;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-1.652;QD=30.43;ReadPosRankSum=0.282;SNPEFF_AMINO_ACID_CHANGE=A602P;SNPEFF_CODON_CHANGE=Gcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_139561198_139564451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    1/1:1,43:44:83.68:1372,84,0
6    139563937    rs142843391    G    A    409.10    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.335;DB;DP=44;Dels=0.0;FS=1.161;HRun=1;HaplotypeScore=0.9933;MQ=59.48;MQ0=0;MQRankSum=-0.435;QD=9.3;ReadPosRankSum=-1.627;SNPEFF_AMINO_ACID_CHANGE=P594L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_139561198_139564451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    0/1:27,17:44:99:439,0,896
6    139576544    rs41289819    G    A    446.33    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=58;Dels=0.0;FS=5.697;HRun=4;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=1.197;QD=7.7;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    0/1:37,21:58:99:476,0,1277
6    139576736    rs17068451    C    T    1021.66    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.003;DB;DP=101;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;MQRankSum=-0.58;QD=10.12;ReadPosRankSum=-0.081;SNPEFF_AMINO_ACID_CHANGE=V348M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_139576701_139576775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    0/1:60,41:101:99:1052,0,1860
6    139581461    rs6904970    C    T    141.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=24;Dels=0.0;FS=7.228;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.153;QD=5.91;ReadPosRankSum=-0.276;SNPEFF_AMINO_ACID_CHANGE=K332;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_139581455_139581574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    0/1:16,8:24:99:172,0,565
6    139583990    rs6922150    A    T    927.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    1/1:0,25:25:75.23:961,75,0
6    139591505    rs150622218    TA    T    273    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=17;FS=0.0;HRun=4;HaplotypeScore=42.0322;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=-0.271;QD=16.06;ReadPosRankSum=-1.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    0/1:7,10:17:99:312,0,204
6    139598061    rs111894258    TA    T    273.62    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=32;FS=0.0;HRun=10;HaplotypeScore=74.2891;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=8.55;ReadPosRankSum=1.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    0/1:17,15:32:99:313,0,286
6    139601136    rs34157660    A    G    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
6    139610124    rs55712380    G    T    41.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=8.3;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358430    GT:AD:DP:GQ:PL    0/1:2,3:5:70.97:71,0,71
6    142383857    rs112419414    C    G    34.23    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.198;QD=4.28;ReadPosRankSum=1.495;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NMBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480652    GT:AD:DP:GQ:PL    0/1:5,3:8:64.23:64,0,169
6    142384082    rs6907175    G    A    567.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.89;MQ0=0;QD=29.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NMBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480652    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:601,48,0
6    142455130    rs225607    C    T    1059.27    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.535;DB;DP=93;Dels=0.0;FS=3.943;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.047;QD=11.39;ReadPosRankSum=-1.753;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=GJE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450456    GT:AD:DP:GQ:PL    0/1:50,43:93:99:1089,0,1532
6    142455483    rs113618054    G    T    80.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.14;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=GJE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450456    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:111,0,67
6    142487319    rs113182478    A    T    160.40    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.955;QD=9.44;ReadPosRankSum=1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367621    GT:AD:DP:GQ:PL    0/1:11,6:17:99:190,0,353
6    142487469    rs225656    C    A    255.70    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.356;QD=10.23;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367621    GT:AD:DP:GQ:PL    0/1:14,11:25:99:286,0,365
6    142491463    rs72556186    C    CG    4073.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;FS=0.0;HRun=1;HaplotypeScore=197.6291;IndelType=I;MQ=61.22;MQ0=0;QD=41.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367621    GT:AD:DP:GQ:PL    1/1:3,94:97:99:4073,280,0
6    142691549    rs11155242    A    C    2801.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=K229Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_142691307_142691588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR126;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541199    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2835,220,0
6    142715195    rs17071756    T    C    331.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR126;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230173    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
6    142718801    rs989946    G    A    5880.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=L464;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_142718750_142718892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR126;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000296932    GT:AD:DP:GQ:PL    1/1:0,170:171:99:5880,427,0
6    142724918    rs9496369    C    T    1844.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR126;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230173    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1877,147,0
6    142738314    rs67174921    CTTCTT    C    907.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=103.6134;IndelType=D;MQ=53.01;MQ0=0;QD=53.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR126;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230173    GT:AD:DP:GQ:PL    1/1:1,16:17:48.16:950,48,0
6    142758631    rs1262686    A    G    4804.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9142;MQ=59.61;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=Q1099R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_142758571_142758672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR126;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296932    GT:AD:DP:GQ:PL    1/1:0,152:153:99:4804,385,0
6    143074700    rs169098    T    C    600.60    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.803;DB;DP=57;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=3.2649;MQ=60.0;MQ0=0;MQRankSum=1.148;QD=10.54;ReadPosRankSum=-1.689;SNPEFF_AMINO_ACID_CHANGE=P2295;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_143072606_143075068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000012134    GT:AD:DP:GQ:PL    0/1:29,27:57:99:631,0,838
6    143081847    rs197462    A    G    143.52    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=11.04;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000012134    GT:AD:DP:GQ:PL    0/1:8,5:13:99:174,0,257
6    143090633    rs75657229    T    C    294.96    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.064;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.836;QD=14.75;ReadPosRankSum=-1.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000012134    GT:AD:DP:GQ:PL    0/1:9,11:20:99:325,0,237
6    143090734    rs34530989    T    C    626.16    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=40;Dels=0.0;FS=2.909;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.606;QD=15.65;ReadPosRankSum=-0.549;SNPEFF_AMINO_ACID_CHANGE=G1714;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_143090689_143096262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000012134    GT:AD:DP:GQ:PL    0/1:18,22:40:99:656,0,617
6    143091263    rs109836    A    G    1380.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=L1538P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_143090689_143096262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000012134    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1413,108,0
6    143091769    rs34947356    G    A    718.52    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=2.031;DB;DP=38;Dels=0.0;FS=2.997;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.149;QD=18.91;ReadPosRankSum=0.657;SNPEFF_AMINO_ACID_CHANGE=V1369;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_143090689_143096262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIVEP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000012134    GT:AD:DP:GQ:PL    0/1:15,23:38:99:749,0,428
6    143382110    rs7774011    T    C    399.86    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.2;DB;DP=33;Dels=0.0;FS=3.419;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.674;QD=12.12;ReadPosRankSum=0.528;SNPEFF_AMINO_ACID_CHANGE=S12;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_143382084_143382203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367601    GT:AD:DP:GQ:PL    0/1:19,14:33:99:430,0,547
6    143486213    .    T    C    982.11    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.819;DP=78;Dels=0.0;FS=1.052;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.11;QD=12.59;ReadPosRankSum=-0.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275235    GT:AD:DP:GQ:PL    0/1:42,36:78:99:1012,0,1467
6    143605472    rs9403480    G    T    432.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275235    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:466,36,0
6    143654625    rs2303386    C    T    153.83    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=7.33;ReadPosRankSum=-1.557;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367601    GT:AD:DP:GQ:PL    0/1:13,8:21:99:184,0,407
6    143754938    rs3761999    G    A    312.63    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=3.239;DB;DP=27;Dels=0.0;FS=2.876;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=11.58;ReadPosRankSum=1.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237283    GT:AD:DP:GQ:PL    0/1:17,10:27:99:343,0,458
6    143765143    rs4605902    T    C    119.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.361;QD=13.23;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367593    GT:AD:DP:GQ:PL    0/1:4,5:9:99:149,0,140
6    143784031    rs68139102    AT    A    566.59    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.4;DB;DP=60;FS=1.158;HRun=8;HaplotypeScore=155.759;IndelType=D;MQ=60.72;MQ0=0;MQRankSum=0.205;QD=9.44;ReadPosRankSum=1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344281    GT:AD:DP:GQ:PL    0/1:33,27:60:99:606,0,955
6    143789181    rs161068    A    T    104.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.9;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344281    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,105
6    143792675    rs22908    T    C    1032.58    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=3.727;DB;DP=69;Dels=0.0;FS=8.537;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.038;QD=14.96;ReadPosRankSum=0.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344281    GT:AD:DP:GQ:PL    0/1:34,35:69:99:1063,0,1180
6    143823527    rs72992630    T    G    1594.79    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=114;Dels=0.0;FS=3.62;HRun=0;HaplotypeScore=2.6803;MQ=59.8;MQ0=0;MQRankSum=2.212;QD=13.99;ReadPosRankSum=-2.281;SNPEFF_AMINO_ACID_CHANGE=I310L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_143823492_143823702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUCA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000002165    GT:AD:DP:GQ:PL    0/1:56,58:114:99:1625,0,1766
6    144032317    rs2488101    A    G    520.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=28.94;ReadPosRankSum=-1.542;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305766    GT:AD:DP:GQ:PL    1/1:1,17:18:9.93:553,10,0
6    144032822    rs2488102    A    T    228.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.644;QD=12.67;ReadPosRankSum=2.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305766    GT:AD:DP:GQ:PL    0/1:10,8:18:99:258,0,350
6    144033366    rs3762004    G    A    440.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=40;Dels=0.0;FS=8.129;HRun=0;HaplotypeScore=0.5784;MQ=59.53;MQ0=0;MQRankSum=-0.262;QD=11.0;ReadPosRankSum=-0.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305766    GT:AD:DP:GQ:PL    0/1:24,16:40:99:470,0,876
6    144086394    rs9496767    G    A    2269.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305766    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2303,172,0
6    144104469    rs1012753    A    T    496.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=26.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305766    GT:AD:DP:GQ:PL    1/1:0,19:19:48.12:530,48,0
6    144205695    rs17614885    C    G    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.65;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237275    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,72
6    144758647    .    CT    C    45.24    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.648;DP=22;FS=0.0;HRun=12;HaplotypeScore=124.57;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=0.38;QD=2.06;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367529    GT:AD:DP:GQ:PL    0/1:14,6:22:84.27:84,0,294
6    144758799    rs4895642    A    G    614.01    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.581;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.655;QD=10.59;ReadPosRankSum=-0.15;SNPEFF_AMINO_ACID_CHANGE=E386;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_144758701_144758882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367529    GT:AD:DP:GQ:PL    0/1:34,24:58:99:644,0,1182
6    144761383    rs4282425    A    G    92.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.58;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367529    GT:AD:DP:GQ:PL    0/1:4,4:8:99:123,0,120
6    144761429    rs4609044    G    A    225.36    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=15;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=15.02;ReadPosRankSum=0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367529    GT:AD:DP:GQ:PL    0/1:7,8:15:99:255,0,175
6    144769103    rs6570632    A    G    197.89    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.27;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367529    GT:AD:DP:GQ:PL    0/1:1,6:7:20.69:228,0,21
6    144806413    .    T    TA    444.12    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.809;DP=29;FS=0.0;HRun=1;HaplotypeScore=59.3468;IndelType=I;MQ=61.84;MQ0=0;MQRankSum=0.558;QD=15.31;ReadPosRankSum=-1.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367545    GT:AD:DP:GQ:PL    0/1:16,13:29:99:483,0,464
6    145669711    rs1972364    A    T    383.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL356739.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408869    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:416,33,0
6    145669741    rs7751268    G    A    704.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9866;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL356739.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408869    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:738,54,0
6    145669776    rs7751389    G    A    1294.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL356739.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408869    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1327,102,0
6    145670042    rs7771768    T    C    2668.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL356739.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408869    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2701,205,0
6    145822992    rs380883    A    G    2078.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535403    GT:AD:DP:GQ:PL    1/1:0,63:64:99:2112,162,0
6    145823642    rs370653    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535403    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    145947080    rs1045820    C    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    145956793    rs13200495    G    C    113.66    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=10.33;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324857    GT:AD:DP:GQ:PL    0/1:6,5:11:99:144,0,219
6    146007166    rs702322    G    A    65.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.27;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324857    GT:AD:DP:GQ:PL    0/1:6,3:9:95.38:95,0,218
6    146121608    rs9386131    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237281    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    146125466    rs9403747    T    G    1374.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237281    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1407,105,0
6    146125793    rs3811102    A    T    1451.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=H583Q;SNPEFF_CODON_CHANGE=caT/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_146125508_146127557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000237281    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1484,120,0
6    146126419    rs9373475    C    T    2892.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.74;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=V375M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_146125508_146127557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000237281    GT:AD:DP:GQ:PL    1/1:0,86:87:99:2925,217,0
6    146201743    rs2814879    T    C    254.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.05;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275233    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
6    146207465    rs1062068    A    G    133.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=26.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367507    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:166,15,0
6    146207502    rs11421576    G    GT    240.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=43.416;IndelType=I;MQ=62.65;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367507    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:282,21,0
6    146207563    rs1062067    A    G    511.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.72;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367507    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:544,42,0
6    146207657    rs2256998    A    C    345.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367507    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:378,30,0
6    146216184    rs2247206    C    T    1925.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275233    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1958,147,0
6    146234644    rs9497426    G    A    1053.61    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.039;DB;DP=89;Dels=0.0;FS=1.772;HRun=0;HaplotypeScore=1.7219;MQ=59.06;MQ0=0;MQRankSum=1.302;QD=11.84;ReadPosRankSum=0.608;SNPEFF_AMINO_ACID_CHANGE=C1432;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_146234614_146234685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275233    GT:AD:DP:GQ:PL    0/1:50,39:89:99:1084,0,1601
6    146244012    rs12214668    G    A    495.55    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=46;Dels=0.0;FS=1.361;HRun=4;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=-0.772;QD=10.77;ReadPosRankSum=-0.904;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275233    GT:AD:DP:GQ:PL    0/1:25,21:46:99:526,0,751
6    146247554    .    T    A    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.14;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275233    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:67,0,71
6    146262697    rs9285508    G    T    760.71    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.497;DB;DP=59;Dels=0.0;FS=4.401;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=12.89;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275233    GT:AD:DP:GQ:PL    0/1:30,28:59:99:791,0,937
6    146264071    rs6912351    T    C    159.64    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.61;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275233    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:190,0,24
6    146755140    rs2942    G    A    1810.48    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.23;DB;DP=132;Dels=0.0;FS=11.12;HRun=2;HaplotypeScore=1.7791;MQ=59.83;MQ0=0;MQRankSum=1.147;QD=13.72;ReadPosRankSum=-0.311;SNPEFF_AMINO_ACID_CHANGE=K931;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_146755008_146758734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282753    GT:AD:DP:GQ:PL    0/1:70,61:132:99:1840,0,2096
6    146755324    rs6923492    T    C    630.75    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.005;DB;DP=61;Dels=0.0;FS=5.342;HRun=3;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.962;QD=10.34;ReadPosRankSum=-0.977;SNPEFF_AMINO_ACID_CHANGE=S993P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_146755008_146758734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282753    GT:AD:DP:GQ:PL    0/1:33,28:61:99:661,0,1045
6    146755515    rs6923864    T    G    528.90    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.952;DB;DP=44;Dels=0.0;FS=1.264;HRun=2;HaplotypeScore=0.0;MQ=58.41;MQ0=0;MQRankSum=0.596;QD=12.02;ReadPosRankSum=-1.923;SNPEFF_AMINO_ACID_CHANGE=G1056;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_146755008_146758734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282753    GT:AD:DP:GQ:PL    0/1:21,23:44:99:559,0,624
6    146755560    rs1047006    T    G    451.35    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.494;DB;DP=47;Dels=0.0;FS=6.546;HRun=0;HaplotypeScore=1.5616;MQ=59.01;MQ0=0;MQRankSum=0.498;QD=9.6;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=P1071;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_146755008_146758734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282753    GT:AD:DP:GQ:PL    0/1:27,20:47:99:481,0,897
6    146755842    rs9373491    C    A    807.81    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.111;DB;DP=61;Dels=0.0;FS=3.545;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.214;QD=13.24;ReadPosRankSum=1.87;SNPEFF_AMINO_ACID_CHANGE=P1165;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_146755008_146758734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282753    GT:AD:DP:GQ:PL    0/1:31,30:61:99:838,0,944
6    146875322    rs3804282    G    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    146987930    rs9403802    C    T    1184.99    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=83;Dels=0.0;FS=1.069;HRun=0;HaplotypeScore=1.8633;MQ=59.5;MQ0=0;MQRankSum=0.433;QD=14.28;ReadPosRankSum=1.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473647    GT:AD:DP:GQ:PL    0/1:42,41:83:99:1215,0,1365
6    147013798    rs10457804    C    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367493    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,73
6    147042695    rs11273150    A    AGGGAACATGCAATAATAAGATTTTTAGAGGC    12678.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=698.4984;IndelType=I;MQ=35.7;MQ0=0;QD=352.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367493    GT:AD:DP:GQ:PL    1/1:28,4:36:99:12679,105,0
6    147047341    rs3747754    T    C    1190.51    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.478;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6482;MQ=58.82;MQ0=0;MQRankSum=0.245;QD=20.18;ReadPosRankSum=1.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326929    GT:AD:DP:GQ:PL    0/1:21,38:59:99:1221,0,591
6    147049641    rs11155480    T    A    220.44    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=22.04;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326929    GT:AD:DP:GQ:PL    0/1:3,7:10:90.98:250,0,91
6    147049899    rs1327669    T    C    437.23    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.628;DB;DP=32;Dels=0.0;FS=3.702;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.513;QD=13.66;ReadPosRankSum=-0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326929    GT:AD:DP:GQ:PL    0/1:14,18:32:99:467,0,498
6    147054241    .    A    ATTAATGTAC    2093.53    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.114;DP=59;FS=3.065;HRun=0;HaplotypeScore=394.0756;IndelType=I;MQ=52.62;MQ0=0;MQRankSum=-6.009;QD=35.48;ReadPosRankSum=-0.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367493    GT:AD:DP:GQ:PL    0/1:45,9:59:99:2133,0,3309
6    147054410    rs67991595    T    TA    1105.55    PASS    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=0.102;DB;DP=83;FS=0.0;HRun=1;HaplotypeScore=269.3495;IndelType=I;MQ=58.73;MQ0=0;MQRankSum=-0.063;QD=13.32;ReadPosRankSum=-0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367493    GT:AD:DP:GQ:PL    0/1:52,30:83:99:1145,0,1700
6    147054450    rs3761782    A    C    543.96    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=53;Dels=0.0;FS=5.424;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=0.892;QD=10.26;ReadPosRankSum=1.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367493    GT:AD:DP:GQ:PL    0/1:35,18:53:99:574,0,1182
6    147054498    rs3761783    G    C    72.75    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.196;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.196;QD=4.85;ReadPosRankSum=-0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367493    GT:AD:DP:GQ:PL    0/1:11,4:15:99:103,0,402
6    147054596    rs3761784    G    T    40.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367493    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,71
6    147062220    rs1327666    C    T    1006.10    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.337;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.914;QD=13.6;ReadPosRankSum=1.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367490    GT:AD:DP:GQ:PL    0/1:36,37:74:99:1036,0,1085
6    147066954    rs9647636    G    A    172.75    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=13.29;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367490    GT:AD:DP:GQ:PL    0/1:7,6:13:99:203,0,254
6    147067093    rs9647637    C    T    749.29    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.842;DB;DP=61;Dels=0.0;FS=1.029;HRun=0;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=0.099;QD=12.28;ReadPosRankSum=-0.994;SNPEFF_AMINO_ACID_CHANGE=G1071;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_147067058_147067245;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397944    GT:AD:DP:GQ:PL    0/1:30,31:61:99:779,0,857
6    147073639    rs140827988    TATA    T    478.93    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.834;DB;DP=32;FS=2.872;HRun=0;HaplotypeScore=133.8523;IndelType=D;MQ=57.8;MQ0=0;MQRankSum=0.175;QD=14.97;ReadPosRankSum=2.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367490    GT:AD:DP:GQ:PL    0/1:20,12:32:99:518,0,1274
6    147103358    rs1325701    A    G    431.65    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=3.332;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=13.08;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326916    GT:AD:DP:GQ:PL    0/1:16,17:33:99:462,0,516
6    147103416    rs259405    C    T    475.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326916    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:508,39,0
6    147106841    rs259391    A    G    1003.03    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.154;DB;DP=78;Dels=0.0;FS=2.105;HRun=1;HaplotypeScore=0.9997;MQ=59.76;MQ0=0;MQRankSum=-0.374;QD=12.86;ReadPosRankSum=0.229;SNPEFF_AMINO_ACID_CHANGE=K711R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_147106746_147106848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367493    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1033,0,1271
6    147136073    rs41285875    G    A    230.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.46;MQ0=0;MQRankSum=-1.945;QD=15.4;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367488    GT:AD:DP:GQ:PL    0/1:6,9:15:99:261,0,176
6    147136212    rs1052444    A    T    421.58    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.381;DB;DP=44;Dels=0.0;FS=10.357;HRun=0;HaplotypeScore=0.0;MQ=54.88;MQ0=0;MQRankSum=1.701;QD=9.58;ReadPosRankSum=0.164;SNPEFF_AMINO_ACID_CHANGE=E1621D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_147136168_147136598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397944    GT:AD:DP:GQ:PL    0/1:30,14:44:99:452,0,841
6    147136244    rs259370    A    G    322.84    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=0.257;DB;DP=43;Dels=0.0;FS=1.366;HRun=0;HaplotypeScore=0.0;MQ=56.52;MQ0=0;MQRankSum=0.501;QD=7.51;ReadPosRankSum=-1.178;SNPEFF_AMINO_ACID_CHANGE=H1632R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_147136168_147136598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf103;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397944    GT:AD:DP:GQ:PL    0/1:31,12:43:99:353,0,850
6    147631201    rs6928919    A    G    570.61    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DB;DP=49;Dels=0.0;FS=3.457;HRun=0;HaplotypeScore=0.8941;MQ=59.53;MQ0=0;MQRankSum=0.256;QD=11.65;ReadPosRankSum=0.687;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179882    GT:AD:DP:GQ:PL    0/1:30,19:49:99:601,0,1029
6    147635318    rs111664921    T    TAC    1726.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.034;DB;DP=57;FS=5.616;HRun=0;HaplotypeScore=208.5704;IndelType=I;MQ=57.74;MQ0=1;MQRankSum=0.561;QD=29.27;ReadPosRankSum=-0.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179882    GT:AD:DP:GQ:PL    1/1:16,42:57:57.75:1769,58,0
6    147635385    rs1039083    C    G    987.05    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.84;DB;DP=99;Dels=0.0;FS=4.09;HRun=0;HaplotypeScore=1.7653;MQ=58.29;MQ0=1;MQRankSum=0.526;QD=9.97;ReadPosRankSum=1.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179882    GT:AD:DP:GQ:PL    0/1:63,36:99:99:1017,0,1853
6    147635413    rs1039084    A    G    1182.60    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=107;Dels=0.0;FS=4.972;HRun=0;HaplotypeScore=1.5731;MQ=58.49;MQ0=0;MQRankSum=1.564;QD=11.05;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=N107S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_147635400_147635467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000179882    GT:AD:DP:GQ:PL    0/1:63,44:107:99:1213,0,2013
6    147635547    rs1039085    C    T    328.67    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.109;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=10.96;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179882    GT:AD:DP:GQ:PL    0/1:19,11:30:99:359,0,670
6    147674450    rs55873689    A    G    524.68    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.599;DB;DP=28;Dels=0.0;FS=1.619;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.168;QD=18.74;ReadPosRankSum=0.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179882    GT:AD:DP:GQ:PL    0/1:10,18:28:99:555,0,266
6    147680359    rs9390459    A    G    1081.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.37;DB;DP=60;Dels=0.0;FS=3.769;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.412;QD=18.03;ReadPosRankSum=-0.148;SNPEFF_AMINO_ACID_CHANGE=L139;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_147680220_147680459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392291    GT:AD:DP:GQ:PL    0/1:24,36:60:99:1112,0,512
6    147684318    rs9403852    C    T    40.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179882    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,72
6    147685480    rs6924763    A    G    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392291    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
6    147829844    rs73020122    T    G    32.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=10.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367474    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:62,0,24
6    147830073    rs66812182    C    T    268.25    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=24;Dels=0.0;FS=1.685;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.146;QD=11.18;ReadPosRankSum=-0.088;SNPEFF_AMINO_ACID_CHANGE=T3;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_147830063_147830523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367474    GT:AD:DP:GQ:PL    0/1:14,10:24:99:298,0,439
6    148701197    rs4897000    A    G    100.44    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.09;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367467    GT:AD:DP:GQ:PL    0/1:1,4:5:27.61:130,0,28
6    148761456    rs2272998    G    C    1667.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367467    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1701,126,0
6    148761603    rs9498038    C    A    856.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367467    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:889,66,0
6    148808624    rs2294778    G    C    135.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367467    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:168,12,0
6    148808631    rs2294779    G    T    182.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367467    GT:AD:DP:GQ:PL    1/1:0,8:8:18.03:216,18,0
6    148835416    rs1057793    C    T    62.89    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.573;QD=6.29;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367467    GT:AD:DP:GQ:PL    0/1:7,3:10:92.88:93,0,209
6    148835436    rs145246370    CT    C    120.12    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=16;FS=2.059;HRun=5;HaplotypeScore=65.874;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=0.766;QD=7.51;ReadPosRankSum=2.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367467    GT:AD:DP:GQ:PL    0/1:9,7:16:99:159,0,324
6    148853867    rs1465307    T    C    382.18    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=29;Dels=0.0;FS=3.16;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.943;QD=13.18;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367467    GT:AD:DP:GQ:PL    0/1:16,13:29:99:412,0,423
6    148865257    rs208696    A    G    6323.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.804;DB;DP=200;Dels=0.0;FS=2.261;HRun=0;HaplotypeScore=2.8445;MQ=59.54;MQ0=0;MQRankSum=-0.141;QD=31.62;ReadPosRankSum=0.151;SNPEFF_AMINO_ACID_CHANGE=Q294R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_148864816_148865954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537769    GT:AD:DP:GQ:PL    1/1:3,197:200:99:6323,417,0
6    149268621    rs7747823    A    G    139.15    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=10.7;ReadPosRankSum=2.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367463    GT:AD:DP:GQ:PL    0/1:8,5:13:99:169,0,298
6    149274886    rs2449394    T    C    119.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367463    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
6    149285386    rs3734376    T    C    36.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.1;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367463    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:66,0,72
6    149285719    rs3734377    A    G    260.93    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.449;DB;DP=19;Dels=0.0;FS=19.651;HRun=0;HaplotypeScore=1.9312;MQ=60.0;MQ0=0;MQRankSum=1.347;QD=13.73;ReadPosRankSum=-0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367463    GT:AD:DP:GQ:PL    0/1:9,10:19:99:291,0,286
6    149340390    rs2275423    G    C    874.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367463    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:908,69,0
6    149691355    rs6570963    T    G    94.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286332    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
6    149699016    rs7752947    A    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286332    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    149700805    rs2031450    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286332    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:82,6,0
6    149718568    .    ACT    A    307.63    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DP=17;FS=0.0;HRun=0;HaplotypeScore=72.9441;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=-1.299;QD=18.1;ReadPosRankSum=0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286332    GT:AD:DP:GQ:PL    0/1:8,9:17:99:347,0,398
6    149722040    rs237023    A    G    93.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286332    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
6    150209196    rs9968871    G    A    212.43    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=26.55;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357183    GT:AD:DP:GQ:PL    0/1:1,7:8:7.49:242,0,7
6    150209204    rs9969044    A    G    188.84    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=20.98;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357183    GT:AD:DP:GQ:PL    0/1:2,7:9:57.16:219,0,57
6    150209309    rs9322228    C    G    598.22    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=2.11;DB;DP=40;Dels=0.0;FS=1.307;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.515;QD=14.96;ReadPosRankSum=1.855;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357183    GT:AD:DP:GQ:PL    0/1:17,23:40:99:628,0,477
6    150209432    rs7774787    G    A    507.57    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.507;DB;DP=31;Dels=0.0;FS=5.93;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.046;QD=16.37;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357183    GT:AD:DP:GQ:PL    0/1:13,18:31:99:538,0,354
6    150209717    rs2342767    C    G    932.54    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.176;DB;DP=75;Dels=0.0;FS=9.617;HRun=0;HaplotypeScore=2.6259;MQ=56.2;MQ0=0;MQRankSum=0.059;QD=12.43;ReadPosRankSum=0.208;SNPEFF_AMINO_ACID_CHANGE=V201L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150209634_150209803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367363    GT:AD:DP:GQ:PL    0/1:41,34:75:99:963,0,1144
6    150209828    rs2342768    A    G    40.08    QDFilter2    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.8275;MQ=41.11;MQ0=0;MQRankSum=-2.068;QD=1.54;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529948    GT:AD:DP:GQ:PL    0/1:18,8:26:70.07:70,0,315
6    150209849    rs11316635    TA    T    40.30    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.754;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=165.8692;IndelType=D;MQ=41.96;MQ0=0;MQRankSum=-0.352;QD=1.92;ReadPosRankSum=0.955;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529948    GT:AD:DP:GQ:PL    0/1:15,5:21:79.33:79,0,281
6    150210344    rs7764376    A    G    193.77    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=21.53;ReadPosRankSum=-0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531073    GT:AD:DP:GQ:PL    0/1:2,7:9:57.80:224,0,58
6    150210681    rs9371533    G    A    540.98    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=59.62;MQ0=0;MQRankSum=0.573;QD=8.87;ReadPosRankSum=1.658;SNPEFF_AMINO_ACID_CHANGE=T106I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150210484_150210759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367363    GT:AD:DP:GQ:PL    0/1:40,21:61:99:571,0,1310
6    150210685    rs9383921    C    T    526.70    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.579;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=59.62;MQ0=0;MQRankSum=0.572;QD=8.78;ReadPosRankSum=1.199;SNPEFF_AMINO_ACID_CHANGE=A105T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150210484_150210759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367363    GT:AD:DP:GQ:PL    0/1:38,22:60:99:557,0,1069
6    150210802    rs6933882    A    G    90.11    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=14;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.071;QD=6.44;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531073    GT:AD:DP:GQ:PL    0/1:10,4:14:99:120,0,323
6    150210994    rs6939761    T    C    979.32    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.418;DB;DP=65;Dels=0.0;FS=1.11;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=15.07;ReadPosRankSum=1.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531073    GT:AD:DP:GQ:PL    0/1:30,35:65:99:1009,0,968
6    150210999    rs3823021    G    C    1034.42    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.599;DB;DP=68;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.122;QD=15.21;ReadPosRankSum=1.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531073    GT:AD:DP:GQ:PL    0/1:32,36:68:99:1064,0,903
6    150211123    rs2151910    A    T    2015.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=Y46N;SNPEFF_CODON_CHANGE=Tat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150211021_150211177;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367363    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2049,153,0
6    150212003    rs9383583    C    T    309.73    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.415;DB;DP=31;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.012;QD=9.99;ReadPosRankSum=0.888;SNPEFF_AMINO_ACID_CHANGE=R12H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150211953_150212170;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357183    GT:AD:DP:GQ:PL    0/1:20,11:31:99:340,0,590
6    150212150    rs9371539    C    T    65.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.18;ReadPosRankSum=1.231;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_6_150211953_150212170;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357183    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:96,0,66
6    150239330    rs17079029    C    T    534.61    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=37;Dels=0.0;FS=3.053;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.623;QD=14.45;ReadPosRankSum=-0.076;SNPEFF_AMINO_ACID_CHANGE=R274;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150239310_150239520;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367360    GT:AD:DP:GQ:PL    0/1:18,19:37:99:565,0,517
6    150240083    rs9383944    T    C    505.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.458;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.996;QD=16.85;ReadPosRankSum=1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367360    GT:AD:DP:GQ:PL    0/1:12,18:30:99:535,0,371
6    150240829    rs9397449    G    C    1280.50    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.816;DB;DP=119;Dels=0.0;FS=3.535;HRun=0;HaplotypeScore=3.1824;MQ=48.28;MQ0=10;MQRankSum=0.767;QD=10.76;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=T70R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150240689_150240952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367360    GT:AD:DP:GQ:PL    0/1:67,52:119:99:1310,0,1719
6    150263186    rs4343924    A    C    255.22    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-1.393;QD=21.27;ReadPosRankSum=-1.044;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_150263136_150263293;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367351    GT:AD:DP:GQ:PL    0/1:2,10:12:12.56:285,0,13
6    150266740    rs62439758    A    G    94.14    QDFilter2    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=3.147;DB;DP=117;Dels=0.0;FS=9.194;HRun=0;HaplotypeScore=0.6651;MQ=46.66;MQ0=15;MQRankSum=-5.992;QD=0.8;ReadPosRankSum=-0.808;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367351    GT:AD:DP:GQ:PL    0/1:85,32:117:99:124,0,2583
6    150267288    rs147865720    G    A    35.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.81;MQ0=0;QD=17.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367351    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
6    150322408    rs11752135    T    A    580.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAET1K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403651    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:614,51,0
6    150341260    .    C    T    74.21    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.53;MQ0=39;QD=1.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:11,35:46:12:107,12,0
6    150341540    rs72561813    C    T    63.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.44;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:95,9,0
6    150341896    rs561526    T    C    239.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=1;QD=29.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:272,21,0
6    150341911    rs561472    G    C    301.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.78;MQ0=2;QD=27.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:334,27,0
6    150341916    rs13218839    G    C    312.82    PASS    AB=0.067;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.737;DB;DP=15;Dels=0.0;FS=11.139;HRun=3;HaplotypeScore=0.0;MQ=48.63;MQ0=2;MQRankSum=0.668;QD=20.85;ReadPosRankSum=-0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    0/1:1,14:15:6.91:342,0,7
6    150341990    rs9397120    A    G    1402.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.83;MQ0=3;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1435,117,0
6    150341993    rs9384047    C    A    1372.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.99;MQ0=3;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1406,117,0
6    150342232    rs61730071    G    A    3064.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.65;MQ0=1;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=T147I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150342041_150342322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,92:93:99:3098,235,0
6    150343148    rs78563624    A    C    177.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.96;MQ0=12;QD=7.7;SNPEFF_AMINO_ACID_CHANGE=L106R;SNPEFF_CODON_CHANGE=cTt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150343116_150343379;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,23:23:21.01:210,21,0
6    150343211    .    A    G    112.22    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.22;MQ0=21;MQRankSum=-1.736;QD=3.12;ReadPosRankSum=-1.273;SNPEFF_AMINO_ACID_CHANGE=M85T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150343116_150343379;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:1,35:36:17.96:145,18,0
6    150346532    rs1543547    T    C    1076.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.5929;MQ=57.87;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=R26G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150346523_150346668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1109,84,0
6    150346740    rs1544123    A    G    82.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286380    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
6    150385730    rs912558    T    G    772.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=L129F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150385721_150385738;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULBP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399812    GT:AD:DP:GQ:PL    1/1:0,25:25:66.14:805,66,0
6    150385977    rs912557    C    T    167.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253335    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
6    150387302    rs669009    A    T    1345.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253335    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1379,105,0
6    150387312    rs6935471    A    G    850.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=27.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253335    GT:AD:DP:GQ:PL    1/1:0,31:31:78.18:883,78,0
6    150390313    rs622317    G    C    30.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253335    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
6    150716696    rs612421    T    C    918.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=29.64;SNPEFF_AMINO_ACID_CHANGE=C265R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_150716591_150716702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IYD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229447    GT:AD:DP:GQ:PL    1/1:0,31:31:81.23:952,81,0
6    150729217    rs1339111    T    A    477.34    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.767;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.153;QD=15.91;ReadPosRankSum=-0.855;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IYD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229447    GT:AD:DP:GQ:PL    0/1:14,16:30:99:507,0,433
6    151121760    rs2073062    T    C    97.46    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=8.86;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,259
6    151121915    rs2073061    G    A    486.07    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.594;QD=8.24;ReadPosRankSum=-0.928;SNPEFF_AMINO_ACID_CHANGE=E230;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151121855_151122005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:39,20:59:99:516,0,1213
6    151125723    rs67704778    AC    A    101.54    PASS    AB=0.861;AC=1;AF=0.50;AN=2;BaseQRankSum=0.584;DB;DP=31;FS=1.983;HRun=3;HaplotypeScore=149.9335;IndelType=D;MQ=58.5;MQ0=0;MQRankSum=0.053;QD=3.28;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:26,5:31:99:141,0,638
6    151125896    rs712218    G    A    366.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.959;DB;DP=22;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.533;QD=16.64;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:9,12:22:99:396,0,225
6    151130691    rs712216    G    C    557.41    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=40;Dels=0.0;FS=5.073;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-2.004;QD=13.94;ReadPosRankSum=0.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:21,19:40:99:587,0,722
6    151130920    rs712215    A    G    176.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=14.7;ReadPosRankSum=-1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:6,6:12:99:206,0,214
6    151152257    rs926624    A    G    732.97    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.322;DB;DP=55;Dels=0.0;FS=4.124;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=3.14;QD=13.33;ReadPosRankSum=-1.052;SNPEFF_AMINO_ACID_CHANGE=K670;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151151718_151153341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:27,28:55:99:763,0,762
6    151152656    rs803411    T    C    627.45    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.473;DB;DP=59;Dels=0.0;FS=1.046;HRun=3;HaplotypeScore=1.8625;MQ=59.22;MQ0=0;MQRankSum=-0.857;QD=10.63;ReadPosRankSum=0.953;SNPEFF_AMINO_ACID_CHANGE=T803;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151151718_151153341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:32,27:59:99:657,0,951
6    151153418    rs41289349    C    T    282.76    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.47;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=14.88;ReadPosRankSum=-2.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358517    GT:AD:DP:GQ:PL    0/1:10,9:19:99:313,0,285
6    151197152    rs2073067    C    G    163.70    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=14.88;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367307    GT:AD:DP:GQ:PL    0/1:5,6:11:99:194,0,174
6    151199071    rs2073063    A    G    226.90    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.663;QD=18.91;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367307    GT:AD:DP:GQ:PL    0/1:5,7:12:99:257,0,111
6    151199159    rs3860807    T    C    52.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=10.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367307    GT:AD:DP:GQ:PL    0/1:2,3:5:64.92:82,0,65
6    151247439    rs803455    A    G    922.48    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.915;DB;DP=63;Dels=0.0;FS=9.706;HRun=0;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=14.64;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:32,31:63:99:952,0,944
6    151255961    rs34282451    C    T    99.63    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.8;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=56.82;MQ0=0;MQRankSum=0.442;QD=3.99;ReadPosRankSum=-1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:20,5:25:99:130,0,751
6    151256595    rs9767752    T    C    644.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.397;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.89;MQ0=0;MQRankSum=-2.5;QD=11.5;ReadPosRankSum=-2.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:32,24:56:99:674,0,1081
6    151258110    rs2073189    G    T    1052.63    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.55;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=59.61;MQ0=0;MQRankSum=0.298;QD=17.84;ReadPosRankSum=1.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441122    GT:AD:DP:GQ:PL    0/1:26,33:59:99:1083,0,767
6    151258127    rs742830    G    A    662.30    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.848;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.399;MQ=59.42;MQ0=0;MQRankSum=-0.219;QD=16.56;ReadPosRankSum=1.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441122    GT:AD:DP:GQ:PL    0/1:17,23:40:99:692,0,527
6    151266504    rs803445    C    T    812.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:845,63,0
6    151266564    rs2073191    T    C    578.53    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.875;DB;DP=36;Dels=0.0;FS=4.499;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.462;QD=16.07;ReadPosRankSum=-2.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:16,20:36:99:609,0,574
6    151266717    rs803444    G    A    829.75    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.457;DB;DP=45;Dels=0.0;FS=5.651;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.035;QD=18.44;ReadPosRankSum=-1.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:17,28:45:99:860,0,567
6    151270369    rs803471    G    A    107.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=15.29;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,101
6    151281567    rs1771798    T    C    242.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
6    151286224    rs1627462    A    C    459.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:493,36,0
6    151336739    rs509474    C    G    869.97    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.551;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=14.26;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=S63;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151336652_151336829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420192    GT:AD:DP:GQ:PL    0/1:30,31:61:99:900,0,850
6    151343395    rs9322298    C    G    34.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.69;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:2,2:4:63.11:65,0,63
6    151358011    rs12525380    A    T    556.02    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.972;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.1992;MQ=58.9;MQ0=0;MQRankSum=0.578;QD=14.26;ReadPosRankSum=1.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:21,18:39:99:586,0,746
6    151358299    rs9478918    T    C    3323.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7995;MQ=59.32;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3323,271,0
6    151358325    rs9478919    G    A    1163.98    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.349;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7272;MQ=58.23;MQ0=0;MQRankSum=-0.05;QD=15.52;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:31,42:74:99:1194,0,993
6    151362895    rs113346123    CTTG    C    556.93    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=4.552;DB;DP=30;FS=5.011;HRun=0;HaplotypeScore=163.1447;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=-1.725;QD=18.56;ReadPosRankSum=-1.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367321    GT:AD:DP:GQ:PL    0/1:16,14:30:99:596,0,983
6    151362942    rs1983750    T    C    457.15    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.614;DB;DP=41;Dels=0.0;FS=5.031;HRun=0;HaplotypeScore=0.0;MQ=57.13;MQ0=0;MQRankSum=-1.346;QD=11.15;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=V82A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151362920_151363200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453602    GT:AD:DP:GQ:PL    0/1:22,19:41:99:487,0,634
6    151626671    rs2473609    A    G    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253332    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
6    151626774    rs9397388    T    G    262.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253332    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:296,24,0
6    151627034    rs2294792    A    G    320.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_AMINO_ACID_CHANGE=T105;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151626882_151627038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253332    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
6    151627096    rs2294793    C    T    131.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253332    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
6    151669875    rs10872670    A    G    242.32    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=24;Dels=0.0;FS=3.183;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.217;QD=10.1;ReadPosRankSum=-1.643;SNPEFF_AMINO_ACID_CHANGE=K117E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151669846_151674887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253332    GT:AD:DP:GQ:PL    0/1:11,13:24:99:272,0,340
6    151670172    rs3734799    A    C    1658.47    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.612;DB;DP=125;Dels=0.0;FS=1.735;HRun=1;HaplotypeScore=1.6483;MQ=59.82;MQ0=0;MQRankSum=-0.518;QD=13.27;ReadPosRankSum=0.375;SNPEFF_AMINO_ACID_CHANGE=K111Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151669846_151674887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359755    GT:AD:DP:GQ:PL    0/1:66,59:125:99:1688,0,2036
6    151670897    rs900654    T    C    942.94    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.711;DB;DP=63;Dels=0.0;FS=3.809;HRun=1;HaplotypeScore=1.9774;MQ=59.34;MQ0=0;MQRankSum=-1.078;QD=14.97;ReadPosRankSum=2.021;SNPEFF_AMINO_ACID_CHANGE=A352;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151669846_151674887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359755    GT:AD:DP:GQ:PL    0/1:30,33:63:99:973,0,985
6    151673074    rs41289375    C    G    855.56    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.228;DB;DP=71;Dels=0.0;FS=8.862;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=0.942;QD=12.05;ReadPosRankSum=-2.344;SNPEFF_AMINO_ACID_CHANGE=P1078R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151669846_151674887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359755    GT:AD:DP:GQ:PL    0/1:41,30:71:99:886,0,1133
6    151674116    rs3842128    T    TGAG    3040.69    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.431;DB;DP=106;FS=5.115;HRun=0;HaplotypeScore=336.7067;IndelType=I;MQ=58.85;MQ0=0;MQRankSum=-0.54;QD=28.69;ReadPosRankSum=1.062;SNPEFF_AMINO_ACID_CHANGE=-1426E;SNPEFF_CODON_CHANGE=-/GAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_6_151669846_151674887;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359755    GT:AD:DP:GQ:PL    0/1:55,50:106:99:3080,0,1805
6    151674326    rs3823310    A    C    580.62    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.161;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.055;QD=17.59;ReadPosRankSum=1.566;SNPEFF_AMINO_ACID_CHANGE=E1495D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151669846_151674887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359755    GT:AD:DP:GQ:PL    0/1:13,20:33:99:611,0,423
6    151686905    rs11155787    C    T    308.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=30;Dels=0.0;FS=3.399;HRun=1;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=-0.699;QD=10.29;ReadPosRankSum=-0.91;SNPEFF_AMINO_ACID_CHANGE=E432;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151685252_151688027;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325144    GT:AD:DP:GQ:PL    0/1:18,12:30:99:339,0,592
6    151726300    rs1065310    G    C    466.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336451    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:499,42,0
6    151726756    rs3757314    T    C    620.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336451    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:653,54,0
6    151726829    rs3757315    C    T    1729.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336451    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1763,129,0
6    151742541    rs4870017    T    C    713.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336451    GT:AD:DP:GQ:PL    1/1:0,25:25:66.17:747,66,0
6    151743629    rs6912830    A    C    466.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336451    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:500,36,0
6    151754273    rs6904364    T    C    781.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491268    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:815,63,0
6    151766552    rs3734800    G    A    969.50    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=4.566;DB;DP=57;Dels=0.0;FS=2.323;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=17.01;ReadPosRankSum=0.218;SNPEFF_AMINO_ACID_CHANGE=T132M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151766443_151766960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMND1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367303    GT:AD:DP:GQ:PL    0/1:24,33:57:99:999,0,708
6    151773504    rs13201167    T    C    386.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483931    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:420,33,0
6    151789355    rs963193    T    G    326.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483931    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
6    151789912    rs9397054    C    T    837.23    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.255;DB;DP=59;Dels=0.0;FS=2.322;HRun=0;HaplotypeScore=0.9967;MQ=59.61;MQ0=0;MQRankSum=0.388;QD=14.19;ReadPosRankSum=-0.738;SNPEFF_AMINO_ACID_CHANGE=H212;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151789478_151790389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf211;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545879    GT:AD:DP:GQ:PL    0/1:32,27:59:99:867,0,1086
6    151857370    rs1532401    T    C    459.76    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=15.33;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:12,18:30:99:490,0,413
6    151857594    rs6931664    A    G    655.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.094;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=18.72;ReadPosRankSum=-0.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:14,21:35:99:685,0,442
6    151857713    rs1832727    C    G    227.52    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=20.68;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:4,7:11:99:258,0,119
6    151859314    rs4870034    A    G    618.17    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.462;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.42;MQ0=0;MQRankSum=-0.143;QD=10.48;ReadPosRankSum=-0.366;SNPEFF_AMINO_ACID_CHANGE=E107;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151859180_151859436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:35,24:59:99:648,0,1150
6    151865531    rs3757317    C    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
6    151869645    rs3734803    G    A    257.85    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.738;DB;DP=28;Dels=0.0;FS=2.755;HRun=0;HaplotypeScore=0.0;MQ=60.39;MQ0=0;MQRankSum=-1.279;QD=9.21;ReadPosRankSum=1.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544131    GT:AD:DP:GQ:PL    0/1:19,9:28:99:288,0,588
6    151894278    rs4242277    G    T    2022.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2056,157,0
6    151894505    rs953767    T    C    1686.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.56;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=F324S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151894309_151894626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    1/1:0,52:53:99:1719,132,0
6    151894716    rs1807906    G    A    67.65    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.221;QD=8.46;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:5,3:8:97.64:98,0,177
6    151907027    rs41290243    G    A    281.94    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DB;DP=22;Dels=0.0;FS=11.974;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.297;QD=12.82;ReadPosRankSum=1.747;SNPEFF_AMINO_ACID_CHANGE=V366I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151907024_151907224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:12,10:22:99:312,0,290
6    151914121    rs73780805    T    C    30.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.4;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:5,2:7:60.81:61,0,179
6    151914143    rs17081463    A    G    64.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=7.16;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:5,4:9:94.46:94,0,181
6    151914191    rs3757319    T    C    268.89    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=17;Dels=0.0;FS=8.113;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.537;QD=15.82;ReadPosRankSum=1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:7,10:17:99:299,0,194
6    151914265    rs17081470    T    C    481.69    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=3.391;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.05;MQ0=0;MQRankSum=1.296;QD=9.83;ReadPosRankSum=-0.073;SNPEFF_AMINO_ACID_CHANGE=L439;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151914242_151914415;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:31,18:49:99:512,0,956
6    151914421    rs9383930    A    G    752.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:786,60,0
6    151917427    rs3757320    T    C    274.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.883;QD=15.24;ReadPosRankSum=0.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:9,9:18:99:304,0,317
6    151917822    rs112776643    C    T    188.72    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9995;MQ=60.0;MQ0=0;MQRankSum=-0.984;QD=12.58;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:8,7:15:99:219,0,265
6    151917830    .    A    AT    139.23    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DP=12;FS=0.0;HRun=4;HaplotypeScore=55.3888;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=11.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:7,5:12:99:178,0,109
6    151917887    rs79209547    T    A    75.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.78;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:105,0,26
6    151939181    rs3734804    G    A    2116.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=V683I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_151939082_151942328;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf97;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239374    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2149,160,0
6    152129077    rs2077647    T    C    503.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=26.49;SNPEFF_AMINO_ACID_CHANGE=S10;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152128686_152129499;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000206249    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:536,42,0
6    152201875    rs4986934    T    C    918.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.34;SNPEFF_AMINO_ACID_CHANGE=R171;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152201790_152201906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431590    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:952,69,0
6    152202007    rs3757323    T    C    162.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206249    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:196,18,0
6    152265282    rs55740371    A    AT    1213.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=9;HaplotypeScore=104.7583;IndelType=I;MQ=61.41;MQ0=0;QD=29.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206249    GT:AD:DP:GQ:PL    1/1:2,39:41:99:1255,114,0
6    152265522    rs1801132    G    C    2002.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.399;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=P106;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152265308_152265643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431219    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2035,162,0
6    152420095    rs2228480    G    A    282.87    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.603;DB;DP=22;Dels=0.0;FS=6.193;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=12.86;ReadPosRankSum=1.336;SNPEFF_AMINO_ACID_CHANGE=T181;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152419867_152421087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347491    GT:AD:DP:GQ:PL    0/1:13,9:22:99:313,0,361
6    152443761    rs2295192    C    T    652.58    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.429;DB;DP=44;Dels=0.0;FS=1.157;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.295;QD=14.83;ReadPosRankSum=-0.507;SNPEFF_AMINO_ACID_CHANGE=R3259Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152442822_152443811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356820    GT:AD:DP:GQ:PL    0/1:20,24:44:99:683,0,539
6    152456438    rs117389517    A    C    122.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=12.21;ReadPosRankSum=0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:5,5:10:99:152,0,172
6    152464839    rs2256135    A    G    1306.68    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=2.929;DB;DP=95;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=1.367;MQ=59.27;MQ0=0;MQRankSum=1.141;QD=13.75;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=R1291;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152464758_152464900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367251    GT:AD:DP:GQ:PL    0/1:42,53:95:99:1337,0,1065
6    152466582    rs2813487    A    G    160.65    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.179;DB;DP=19;Dels=0.0;FS=2.772;HRun=4;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=8.46;ReadPosRankSum=-0.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472563    GT:AD:DP:GQ:PL    0/1:11,8:19:99:191,0,406
6    152466674    rs2747662    T    C    326.62    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.428;DB;DP=34;Dels=0.0;FS=3.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=9.61;ReadPosRankSum=-0.952;SNPEFF_AMINO_ACID_CHANGE=E1253;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152466622_152466690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367251    GT:AD:DP:GQ:PL    0/1:23,11:34:99:357,0,620
6    152469188    rs2252755    C    G    371.42    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.308;DB;DP=37;Dels=0.0;FS=1.328;HRun=1;HaplotypeScore=1.8924;MQ=59.38;MQ0=0;MQRankSum=-0.503;QD=10.04;ReadPosRankSum=0.114;SNPEFF_AMINO_ACID_CHANGE=G1245A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152469180_152469513;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367251    GT:AD:DP:GQ:PL    0/1:22,14:37:99:401,0,712
6    152469331    rs2252748    C    T    469.25    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.866;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=57.73;MQ0=0;MQRankSum=-0.415;QD=15.14;ReadPosRankSum=-1.759;SNPEFF_AMINO_ACID_CHANGE=P1197;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152469180_152469513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367251    GT:AD:DP:GQ:PL    0/1:15,16:31:99:499,0,402
6    152476952    rs2813495    G    C    497.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:530,39,0
6    152489038    rs997769    T    C    714.86    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.796;DB;DP=54;Dels=0.0;FS=2.347;HRun=0;HaplotypeScore=0.8667;MQ=59.65;MQ0=0;MQRankSum=-1.792;QD=13.24;ReadPosRankSum=-0.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:26,28:54:99:745,0,889
6    152489294    rs998147    T    C    1034.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_AMINO_ACID_CHANGE=S16G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152489248_152489486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354674    GT:AD:DP:GQ:PL    1/1:0,36:36:87.24:1067,87,0
6    152510712    rs2635459    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    152510750    rs2813523    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    152534946    rs684807    T    A    969.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.96;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,30:30:78.24:1003,78,0
6    152534947    rs2763029    T    A    441.22    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=29;Dels=0.0;FS=3.032;HRun=0;HaplotypeScore=0.0;MQ=59.95;MQ0=0;MQRankSum=-0.244;QD=15.21;ReadPosRankSum=0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:12,17:29:99:471,0,377
6    152535038    rs66932891    TAAAA    T    197.77    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=53.0566;IndelType=D;MQ=56.88;MQ0=0;MQRankSum=0.322;QD=24.72;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:3,5:8:99:237,0,223
6    152539181    rs1408462    C    T    199.87    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=1.331;QD=13.32;ReadPosRankSum=0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:8,7:15:99:230,0,275
6    152539572    rs72340622    TA    T    649.69    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=5.162;DB;DP=109;FS=0.0;HRun=13;HaplotypeScore=417.1962;IndelType=D;MQ=58.48;MQ0=0;MQRankSum=0.445;QD=5.96;ReadPosRankSum=0.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:64,44:109:99:689,0,962
6    152540031    rs78900103    T    C    347.42    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.215;QD=15.11;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:12,11:23:99:377,0,388
6    152540278    rs2147377    A    C    1301.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_AMINO_ACID_CHANGE=F1826V;SNPEFF_CODON_CHANGE=Ttt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152540138_152540320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356820    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1334,105,0
6    152540357    rs17195304    T    C    497.19    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.128;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.18;QD=19.12;ReadPosRankSum=1.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:11,15:26:99:527,0,305
6    152540468    rs2147378    A    T    65.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.29;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:1,3:4:18.57:95,0,19
6    152542234    rs79036759    G    T    137.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.75;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,179
6    152542868    rs9397493    G    T    121.24    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=10.1;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:7,5:12:99:151,0,255
6    152546740    rs1998620    G    A    1947.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.933;MQ=59.27;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:1,62:63:99:1980,156,0
6    152547151    rs1359323    T    C    214.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:247,21,0
6    152552375    rs2274142    G    A    163.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
6    152555057    rs34905593    T    A    171.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=15;Dels=0.0;FS=2.187;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=11.45;ReadPosRankSum=1.237;SNPEFF_AMINO_ACID_CHANGE=S1381;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152554916_152555098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356820    GT:AD:DP:GQ:PL    0/1:9,6:15:99:202,0,319
6    152555082    .    A    G    36.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=4.6;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=V1373A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152554916_152555098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356820    GT:AD:DP:GQ:PL    0/1:4,4:8:66.82:67,0,134
6    152555112    rs2296254    C    T    96.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:129,9,0
6    152558111    rs36215566    T    TA    717.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.583;DB;DP=24;FS=0.0;HRun=7;HaplotypeScore=64.8998;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=-0.829;QD=29.89;ReadPosRankSum=-0.075;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:2,22:24:40.31:759,40,0
6    152560916    rs9479275    G    A    525.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:559,42,0
6    152565897    rs3888239    T    C    199.34    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.758;QD=9.06;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:12,10:22:99:229,0,397
6    152570274    rs17215781    A    G    451.99    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.09;DB;DP=41;Dels=0.0;FS=1.684;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.985;QD=11.02;ReadPosRankSum=0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:23,18:41:99:482,0,747
6    152570415    rs6557210    G    A    717.03    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.753;DB;DP=44;Dels=0.0;FS=1.672;HRun=0;HaplotypeScore=1.9915;MQ=60.0;MQ0=0;MQRankSum=1.208;QD=16.3;ReadPosRankSum=0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:19,25:44:99:747,0,598
6    152576591    rs9397495    A    G    57.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.322;QD=7.19;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545694    GT:AD:DP:GQ:PL    0/1:5,3:8:87.55:88,0,181
6    152615200    rs12664753    G    A    791.72    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=58;Dels=0.0;FS=5.552;HRun=0;HaplotypeScore=0.8321;MQ=59.2;MQ0=0;MQRankSum=0.226;QD=13.65;ReadPosRankSum=-0.132;SNPEFF_AMINO_ACID_CHANGE=H137;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152615095_152615262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537033    GT:AD:DP:GQ:PL    0/1:28,30:58:99:822,0,908
6    152622038    rs78466183    C    A    164.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.11;MQ0=0;MQRankSum=-0.633;QD=16.49;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:4,6:10:99:195,0,119
6    152629586    rs9371581    G    A    4343.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.3;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,126:126:99:4344,316,0
6    152629617    rs9383985    C    T    4012.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.13;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4013,304,0
6    152629772    rs55633181    GA    G    284.43    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=35;FS=0.0;HRun=14;HaplotypeScore=225.8913;IndelType=D;MQ=56.95;MQ0=0;MQRankSum=-0.321;QD=8.13;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:12,21:35:87.52:323,0,88
6    152629815    rs4112833    C    T    841.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.51;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:874,66,0
6    152638209    rs1890100    A    G    365.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:399,30,0
6    152638239    rs931423    T    C    249.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:283,24,0
6    152640248    rs2306915    G    T    188.35    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=17.12;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:4,7:11:99:218,0,129
6    152643178    rs13192881    C    G    155.34    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7879;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=22.19;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:2,5:7:56.73:185,0,57
6    152644476    rs12206044    A    C    77.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.73;MQ0=0;QD=25.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
6    152646693    rs9479294    T    C    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
6    152646993    rs11320587    GA    G    312.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=6;HaplotypeScore=26.8663;IndelType=D;MQ=60.98;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:355,33,0
6    152647681    rs2306916    A    T    1309.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.73;SNPEFF_AMINO_ACID_CHANGE=L4762M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152647448_152647768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341594    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1342,105,0
6    152652034    rs6911096    A    T    3134.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=S4343T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152650865_152652128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341594    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3168,244,0
6    152653037    rs9478314    T    C    1577.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471834    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1611,126,0
6    152658142    rs9479297    T    C    1056.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=K3986R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152657976_152658152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341594    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1089,87,0
6    152658191    rs9479298    T    C    545.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:579,48,0
6    152658216    rs9479299    A    G    267.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=29.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:300,24,0
6    152660310    rs4870095    A    G    1394.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1428,120,0
6    152665261    rs4645434    C    A    1801.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.61;MQ0=0;QD=30.53;SNPEFF_AMINO_ACID_CHANGE=E3925D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152665216_152665362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341594    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1834,144,0
6    152665464    rs145892815    TC    T    659.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=6;HaplotypeScore=72.1893;IndelType=D;MQ=60.86;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:3,22:25:66.15:701,66,0
6    152665628    rs9383617    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    152671475    rs9478320    A    C    1497.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.413;MQ=59.13;MQ0=0;MQRankSum=-1.532;QD=28.25;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:1,52:53:84.64:1530,85,0
6    152671553    rs9478321    A    G    866.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:899,66,0
6    152671919    rs5880967    G    GA    1282.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=9;HaplotypeScore=193.8124;IndelType=I;MQ=59.71;MQ0=0;QD=26.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:7,42:48:99:1325,120,0
6    152671975    rs1387549    A    G    654.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:688,51,0
6    152672031    rs9478322    T    C    317.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:350,27,0
6    152672073    rs12211794    T    C    124.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
6    152673043    rs6908204    G    A    176.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:209,15,0
6    152673147    rs6908392    G    A    1686.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1720,129,0
6    152673519    rs6932325    A    C    593.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,23:23:54.14:627,54,0
6    152673543    rs11370219    C    CT    162.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=12;HaplotypeScore=55.1839;IndelType=I;MQ=58.98;MQ0=0;QD=13.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:5,7:12:21.03:204,21,0
6    152675054    rs6905339    T    C    210.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
6    152675854    rs9397102    A    G    3645.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.893;MQ=59.58;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=S3593;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152675794_152676111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341594    GT:AD:DP:GQ:PL    1/1:0,108:109:99:3646,277,0
6    152680710    rs78531855    G    A    41.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:2,3:5:70.95:71,0,71
6    152683108    rs6557215    A    G    132.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:165,15,0
6    152683183    rs7771657    G    T    383.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:417,30,0
6    152683199    rs7771662    G    A    409.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:442,33,0
6    152683413    rs4407724    G    T    1441.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_AMINO_ACID_CHANGE=G3397;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152683305_152683458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1475,108,0
6    152685865    .    G    GAGGA    665.98    PASS    AC=2;AF=1.00;AN=2;DP=13;FS=0.0;HRun=0;HaplotypeScore=85.2338;IndelType=I;MQ=59.59;MQ0=0;QD=51.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:4,9:13:33.11:708,33,0
6    152686071    rs140861713    A    G    902.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=90;Dels=0.0;FS=0.817;HRun=2;HaplotypeScore=4.7973;MQ=59.0;MQ0=0;MQRankSum=0.671;QD=10.03;ReadPosRankSum=-2.846;SNPEFF_AMINO_ACID_CHANGE=S3352;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152685982_152686154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:54,36:90:99:933,0,1723
6    152686090    rs150170988    G    T    960.77    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.857;DB;DP=91;Dels=0.0;FS=4.099;HRun=0;HaplotypeScore=0.8321;MQ=59.27;MQ0=0;MQRankSum=-0.422;QD=10.56;ReadPosRankSum=-1.192;SNPEFF_AMINO_ACID_CHANGE=S3346Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152685982_152686154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    0/1:56,35:91:99:991,0,1844
6    152687937    rs4870100    T    A    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    152688567    rs7775637    C    T    1455.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1489,108,0
6    152690559    rs1873176    G    A    574.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:607,45,0
6    152694184    rs6913579    T    C    4271.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6451;MQ=59.82;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=E3165;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_152694172_152694354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265368    GT:AD:DP:GQ:PL    1/1:0,130:131:99:4271,310,0
6    153019099    rs71713548    GAGAT    G    1102.20    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.873;DB;DP=41;FS=2.824;HRun=0;HaplotypeScore=198.9265;IndelType=D;MQ=55.58;MQ0=0;MQRankSum=0.082;QD=26.88;ReadPosRankSum=0.328;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_153019030_153019233;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCT1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000367245    GT:AD:DP:GQ:PL    0/1:18,23:41:99:1141,0,1252
6    153077503    rs2791580    G    A    298.73    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=26;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.414;QD=11.49;ReadPosRankSum=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367243    GT:AD:DP:GQ:PL    0/1:14,12:26:99:329,0,461
6    153292226    rs71017562    A    AT    254.34    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.354;DB;DP=23;FS=6.628;HRun=8;HaplotypeScore=48.6755;IndelType=I;MQ=60.93;MQ0=0;MQRankSum=-0.339;QD=11.06;ReadPosRankSum=0.646;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477822    GT:AD:DP:GQ:PL    0/1:12,11:23:99:293,0,261
6    153292557    rs35736062    G    GA    327.59    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.178;DB;DP=30;FS=1.882;HRun=10;HaplotypeScore=64.3152;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=-0.461;QD=10.92;ReadPosRankSum=-1.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229758    GT:AD:DP:GQ:PL    0/1:17,13:30:99:367,0,239
6    153292712    rs1997960    T    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229758    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
6    153296541    rs2073260    G    C    2470.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_AMINO_ACID_CHANGE=Q107E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_153296042_153296756;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229758    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2504,184,0
6    153311001    rs3860814    A    C    472.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.97;MQ0=12;QD=13.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448966    GT:AD:DP:GQ:PL    1/1:0,34:34:45.08:506,45,0
6    153311333    rs72560625    C    CA    207.10    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;FS=0.0;HRun=3;HaplotypeScore=41.7172;IndelType=I;MQ=55.16;MQ0=0;MQRankSum=0.635;QD=12.94;ReadPosRankSum=0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448966    GT:AD:DP:GQ:PL    0/1:9,7:16:99:246,0,273
6    153312308    rs144101470    TTC    T    544.68    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.717;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=123.9335;IndelType=D;MQ=57.35;MQ0=1;MQRankSum=-1.55;QD=15.13;ReadPosRankSum=1.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448966    GT:AD:DP:GQ:PL    0/1:20,16:35:99:584,0,931
6    153313832    rs766127    G    A    580.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367230    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:613,45,0
6    153315617    rs3799135    G    A    1034.95    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=4.772;DB;DP=78;Dels=0.0;FS=0.923;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.944;QD=13.27;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482526    GT:AD:DP:GQ:PL    0/1:43,35:78:99:1065,0,1179
6    153315695    rs3192723    C    T    1474.58    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=3.074;DB;DP=114;Dels=0.0;FS=1.497;HRun=0;HaplotypeScore=1.6498;MQ=57.88;MQ0=0;MQRankSum=-0.324;QD=12.93;ReadPosRankSum=0.239;SNPEFF_AMINO_ACID_CHANGE=V178I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_153315648_153315811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367230    GT:AD:DP:GQ:PL    0/1:61,53:114:99:1505,0,1839
6    153315921    rs3799133    G    A    1725.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=F2;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_153315648_153315943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448966    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1758,129,0
6    153316018    rs6941558    G    A    278.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.96;MQ0=0;MQRankSum=-1.06;QD=15.45;ReadPosRankSum=-0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482526    GT:AD:DP:GQ:PL    0/1:9,9:18:99:308,0,317
6    153316326    rs3734467    A    G    271.75    MQFilter40    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.788;DB;DP=38;Dels=0.0;FS=5.793;HRun=0;HaplotypeScore=0.0;MQ=39.48;MQ0=3;MQRankSum=-0.118;QD=7.15;ReadPosRankSum=0.084;SNPEFF_AMINO_ACID_CHANGE=Y156;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_153316271_153316454;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367231    GT:AD:DP:GQ:PL    0/1:24,14:38:99:302,0,635
6    153323594    rs3818123    C    T    1123.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.5;MQ0=0;QD=31.21;SNPEFF_AMINO_ACID_CHANGE=R76Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_153323562_153323820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367230    GT:AD:DP:GQ:PL    1/1:0,36:36:90.27:1157,90,0
6    153323709    rs3818125    T    C    308.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.69;MQ0=0;QD=30.8;SNPEFF_AMINO_ACID_CHANGE=T38A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_153323562_153323820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367230    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:341,30,0
6    153323945    rs3818128    G    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTRF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367230    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    153332926    rs34837755    AATAAT    A    471.03    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=3.085;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=144.8137;IndelType=D;MQ=55.85;MQ0=0;MQRankSum=-2.349;QD=18.12;ReadPosRankSum=-0.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206262    GT:AD:DP:GQ:PL    0/1:17,9:26:99:510,0,1379
6    153344531    rs685449    T    A    1372.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206262    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1406,102,0
6    153345309    rs545323    C    T    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206262    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
6    153365100    rs2295230    A    C    1287.51    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.268;DB;DP=101;Dels=0.0;FS=0.771;HRun=0;HaplotypeScore=0.6651;MQ=59.31;MQ0=0;MQRankSum=0.121;QD=12.75;ReadPosRankSum=1.663;SNPEFF_AMINO_ACID_CHANGE=A18;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_153365035_153365178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000206262    GT:AD:DP:GQ:PL    0/1:51,50:101:99:1318,0,1484
6    153365348    rs2295231    G    A    42.32    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.322;QD=5.29;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206262    GT:AD:DP:GQ:PL    0/1:5,3:8:72.32:72,0,149
6    153603372    rs115467600    T    C    218.07    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=57.54;MQ0=0;MQRankSum=-2.174;QD=12.11;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL590867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392385    GT:AD:DP:GQ:PL    0/1:7,11:18:99:248,0,144
6    153603373    rs9371678    T    C    60.29    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=56.19;MQ0=0;MQRankSum=1.177;QD=3.35;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL590867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392385    GT:AD:DP:GQ:PL    0/1:11,7:18:90.28:90,0,296
6    153603897    rs147858940    ATCT    A    309.98    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=22;FS=6.864;HRun=0;HaplotypeScore=87.3223;IndelType=D;MQ=57.44;MQ0=0;MQRankSum=0.048;QD=14.09;ReadPosRankSum=-0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL590867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392385    GT:AD:DP:GQ:PL    0/1:13,9:22:99:349,0,458
6    154360508    rs6912029    G    T    141.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=15.72;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434900    GT:AD:DP:GQ:PL    0/1:4,5:9:99:171,0,101
6    154361048    rs12209447    C    T    62.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.51;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229768    GT:AD:DP:GQ:PL    0/1:2,3:5:63.59:93,0,64
6    154414446    rs540825    A    T    1641.27    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.542;DB;DP=114;Dels=0.0;FS=0.715;HRun=0;HaplotypeScore=3.8076;MQ=59.6;MQ0=0;MQRankSum=-1.621;QD=14.4;ReadPosRankSum=1.238;SNPEFF_AMINO_ACID_CHANGE=Q402H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_154414405_154414655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229768    GT:AD:DP:GQ:PL    0/1:54,58:114:99:1671,0,1849
6    154414563    rs675026    A    G    1221.72    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=102;Dels=0.0;FS=0.758;HRun=2;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;MQRankSum=0.642;QD=11.98;ReadPosRankSum=-0.683;SNPEFF_AMINO_ACID_CHANGE=G441;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_154414405_154414655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229768    GT:AD:DP:GQ:PL    0/1:52,50:102:99:1252,0,1698
6    154414573    rs562859    C    T    1126.78    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=86;Dels=0.0;FS=0.861;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-1.231;QD=13.1;ReadPosRankSum=-0.575;SNPEFF_AMINO_ACID_CHANGE=L445;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_154414405_154414655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229768    GT:AD:DP:GQ:PL    0/1:44,42:86:99:1157,0,1484
6    154489416    rs9479772    C    T    75.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.66;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IPCEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265198    GT:AD:DP:GQ:PL    0/1:3,3:6:90.93:106,0,91
6    154567666    rs9479798    T    G    567.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.798;DB;DP=40;Dels=0.0;FS=6.133;HRun=1;HaplotypeScore=1.9998;MQ=60.0;MQ0=0;MQRankSum=1.177;QD=14.18;ReadPosRankSum=-1.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IPCEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520261    GT:AD:DP:GQ:PL    0/1:20,20:40:99:597,0,698
6    154727408    rs9397716    T    C    79.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424998    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:111,9,0
6    154743525    rs7771159    T    C    271.79    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.934;QD=9.71;ReadPosRankSum=0.882;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367209    GT:AD:DP:GQ:PL    0/1:15,13:28:99:302,0,546
6    154749087    rs9397717    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367209    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    154749225    rs9384217    A    T    148.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=12.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367209    GT:AD:DP:GQ:PL    0/1:6,6:12:99:178,0,181
6    154762376    rs34887626    CAA    C    103.43    QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=2.107;DB;DP=69;FS=0.0;HRun=23;HaplotypeScore=439.6234;IndelType=D;MQ=48.58;MQ0=0;MQRankSum=1.997;QD=1.5;ReadPosRankSum=1.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367209    GT:AD:DP:GQ:PL    0/1:49,10:69:99:142,0,398
6    154771075    rs66503727    A    AT    149.75    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.332;DB;DP=19;FS=0.0;HRun=5;HaplotypeScore=73.1059;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=1.464;QD=7.88;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367209    GT:AD:DP:GQ:PL    0/1:13,6:19:99:189,0,274
6    154771277    rs9322467    A    G    1025.49    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.375;DB;DP=85;Dels=0.0;FS=0.868;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.61;QD=12.06;ReadPosRankSum=2.174;SNPEFF_AMINO_ACID_CHANGE=I56;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_154771229_154771392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367213    GT:AD:DP:GQ:PL    0/1:49,36:85:99:1055,0,1564
6    154771449    rs4870285    T    C    287.65    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=17;Dels=0.0;FS=4.26;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.156;QD=16.92;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367209    GT:AD:DP:GQ:PL    0/1:6,11:17:99:318,0,139
6    155094988    rs7762129    G    A    382.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367178    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:416,30,0
6    155109309    rs9322479    G    A    216.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367178    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
6    155116285    rs113255881    TTC    T    1518.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=133.6471;IndelType=D;MQ=61.37;MQ0=0;QD=38.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461219    GT:AD:DP:GQ:PL    1/1:4,35:39:99:1560,105,0
6    155124583    rs3757291    T    G    373.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367178    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:406,30,0
6    155129784    rs66499928    CCTTT    C    830.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=81.7698;IndelType=D;MQ=52.73;MQ0=0;QD=51.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367178    GT:AD:DP:GQ:PL    1/1:1,15:16:45.15:873,45,0
6    155143285    rs77466223    T    G    158.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=22.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367178    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:192,15,0
6    155470288    rs923144    C    T    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
6    155470320    rs923145    C    A    127.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=21.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:160,12,0
6    155485535    rs1032140    G    A    1800.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1833,135,0
6    155485554    rs1032141    G    A    2155.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_AMINO_ACID_CHANGE=Q30;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_155485549_155485734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367174    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2188,160,0
6    155485914    rs1032142    G    C    107.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
6    155503116    rs7770051    G    A    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    155503151    rs7756965    T    C    132.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:165,12,0
6    155503626    rs3792966    G    C    46.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
6    155503640    rs3792967    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
6    155561564    rs11751085    C    T    362.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275246    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
6    155561760    rs4259257    T    C    1431.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=S1089P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_155561664_155561843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1465,108,0
6    155561796    rs11751128    C    T    587.58    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.653;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=58.37;MQ0=0;MQRankSum=-0.966;QD=13.66;ReadPosRankSum=0.501;SNPEFF_AMINO_ACID_CHANGE=R1101C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_155561664_155561843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    0/1:24,19:43:99:618,0,563
6    155565007    .    AAAAAG    A    35.91    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=9;FS=0.0;HRun=0;HaplotypeScore=155.7687;IndelType=D;MQ=41.0;MQ0=0;MQRankSum=-0.55;QD=3.99;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275246    GT:AD:DP:GQ:PL    0/1:4,5:9:46.47:75,0,46
6    155565744    rs6907595    T    C    831.05    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.178;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.77;QD=12.79;ReadPosRankSum=-1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275246    GT:AD:DP:GQ:PL    0/1:30,35:65:99:861,0,939
6    155566889    rs66514738    G    GTTT    1183.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=15;HaplotypeScore=518.7667;IndelType=I;MQ=45.53;MQ0=0;QD=24.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546145    GT:AD:DP:GQ:PL    1/1:23,9:48:98.44:1226,98,0
6    155571113    rs3011902    A    G    911.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462408    GT:AD:DP:GQ:PL    1/1:0,28:28:72.18:945,72,0
6    155572986    rs3011899    G    A    167.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462408    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
6    155574198    rs2989458    C    T    355.02    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.178;DB;DP=21;Dels=0.0;FS=13.331;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=16.91;ReadPosRankSum=-0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367166    GT:AD:DP:GQ:PL    0/1:9,12:21:99:385,0,205
6    155574207    rs2274824    T    C    501.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367166    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:535,42,0
6    155575431    rs1331212    C    T    184.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=18.41;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367166    GT:AD:DP:GQ:PL    0/1:4,6:10:99:214,0,140
6    155575546    rs1331213    C    G    189.42    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.43;DB;DP=26;Dels=0.0;FS=3.982;HRun=0;HaplotypeScore=1.7005;MQ=58.2;MQ0=0;MQRankSum=0.673;QD=7.29;ReadPosRankSum=0.966;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367166    GT:AD:DP:GQ:PL    0/1:16,10:26:99:219,0,450
6    155575607    rs3011895    G    A    422.07    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.156;DB;DP=34;Dels=0.0;FS=1.356;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.535;QD=12.41;ReadPosRankSum=0.845;SNPEFF_AMINO_ACID_CHANGE=E1456;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_155575553_155575707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    0/1:16,18:34:99:452,0,473
6    155575867    rs3011894    G    A    147.27    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.55;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367166    GT:AD:DP:GQ:PL    0/1:1,5:6:23.70:177,0,24
6    155577823    rs1571766    C    T    743.69    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=0.484;DB;DP=49;Dels=0.0;FS=7.413;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.527;QD=15.18;ReadPosRankSum=-0.075;SNPEFF_AMINO_ACID_CHANGE=A1558;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_155577618_155578857;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318981    GT:AD:DP:GQ:PL    0/1:20,29:49:99:774,0,625
6    155579246    rs3734322    A    C    466.47    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.01;DB;DP=51;Dels=0.0;FS=1.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.297;QD=9.15;ReadPosRankSum=-0.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489874    GT:AD:DP:GQ:PL    0/1:30,21:51:99:496,0,953
6    155581289    rs4869849    C    A    251.55    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.67;QD=17.97;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489874    GT:AD:DP:GQ:PL    0/1:5,9:14:99:282,0,170
6    155581619    rs912721    G    A    193.57    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.637;QD=12.9;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489874    GT:AD:DP:GQ:PL    0/1:8,7:15:99:224,0,241
6    155596901    rs927718    T    C    1295.60    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.525;DB;DP=114;Dels=0.0;FS=3.58;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=2.013;QD=11.36;ReadPosRankSum=-0.118;SNPEFF_AMINO_ACID_CHANGE=S16;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_155596750_155597682;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367165    GT:AD:DP:GQ:PL    0/1:61,53:114:99:1326,0,1973
6    155597644    rs6925410    A    G    30.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.56;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367166    GT:AD:DP:GQ:PL    0/1:2,2:4:60.22:60,0,70
6    155597686    rs6557415    C    G    94.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367165    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
6    155606325    rs324356    C    T    422.96    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.977;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.52;QD=14.1;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=T211;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_155606292_155606411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367166    GT:AD:DP:GQ:PL    0/1:16,14:30:99:453,0,468
6    155606531    rs324357    A    G    209.50    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=23.28;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFB1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367166    GT:AD:DP:GQ:PL    0/1:2,7:9:56.90:239,0,57
6    155744013    rs1889503    C    G    418.64    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.569;DB;DP=44;Dels=0.0;FS=1.587;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.142;QD=9.51;ReadPosRankSum=-0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159060    GT:AD:DP:GQ:PL    0/1:25,19:44:99:449,0,863
6    155749713    rs2076471    T    C    70.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=41.96;MQ0=0;QD=23.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159060    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:102,9,0
6    155750219    rs231955    G    A    761.05    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.989;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=12.68;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159060    GT:AD:DP:GQ:PL    0/1:35,25:60:99:791,0,1106
6    156399874    rs4552740    A    T    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL589693.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390728    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
6    156400105    rs1375710    A    G    2384.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.56;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL589693.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390728    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2418,175,0
6    157100396    .    G    GCGC    201.40    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=8;FS=4.771;HRun=0;HaplotypeScore=29.7553;IndelType=I;MQ=57.79;MQ0=0;MQRankSum=0.736;QD=25.18;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=A387AP;SNPEFF_CODON_CHANGE=gcg/gCGCcg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_6_157099086_157100605;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275248    GT:AD:DP:GQ:PL    0/1:3,5:8:25.34:240,0,25
6    157405761    rs3734440    G    A    752.44    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=3.962;DB;DP=48;Dels=0.0;FS=1.33;HRun=0;HaplotypeScore=1.9125;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=15.68;ReadPosRankSum=-1.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275248    GT:AD:DP:GQ:PL    0/1:23,25:48:99:782,0,677
6    157405930    rs3734441    G    A    941.32    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=2.963;DB;DP=79;Dels=0.0;FS=3.191;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.02;QD=11.92;ReadPosRankSum=2.872;SNPEFF_AMINO_ACID_CHANGE=A132;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_157405796_157406039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354354    GT:AD:DP:GQ:PL    0/1:45,34:79:99:971,0,1287
6    157431564    rs75599866    A    G    102.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.53;QD=6.84;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275248    GT:AD:DP:GQ:PL    0/1:9,6:15:99:133,0,316
6    157522360    rs61738955    G    A    1367.10    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=2.655;DB;DP=73;Dels=0.0;FS=3.145;HRun=0;HaplotypeScore=1.9468;MQ=60.0;MQ0=0;MQRankSum=0.096;QD=18.73;ReadPosRankSum=-2.091;SNPEFF_AMINO_ACID_CHANGE=P1053;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_157521839_157522622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414678    GT:AD:DP:GQ:PL    0/1:29,44:73:99:1397,0,823
6    158014296    rs905925    G    C    323.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359775    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:357,27,0
6    158068481    rs616538    T    C    326.65    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.243;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.46;MQ0=0;MQRankSum=1.232;QD=12.56;ReadPosRankSum=1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359775    GT:AD:DP:GQ:PL    0/1:11,15:26:99:357,0,379
6    158074504    rs636169    A    G    1117.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359775    GT:AD:DP:GQ:PL    1/1:0,39:39:96.28:1150,96,0
6    158322816    .    C    A    217.59    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DP=14;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.5784;MQ=58.33;MQ0=0;MQRankSum=-1.067;QD=15.54;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252631    GT:AD:DP:GQ:PL    0/1:5,9:14:99:248,0,172
6    158361899    rs912879    C    T    207.76    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=26;Dels=0.0;FS=2.623;HRun=2;HaplotypeScore=0.9997;MQ=58.38;MQ0=0;MQRankSum=0.028;QD=7.99;ReadPosRankSum=-1.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252631    GT:AD:DP:GQ:PL    0/1:18,8:26:99:238,0,624
6    158438892    rs74497537    C    T    110.27    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=12.25;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:4,5:9:99:140,0,140
6    158475941    rs2296510    T    C    100.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.41;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:8,4:12:99:131,0,291
6    158487303    rs1009013    C    A    82.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
6    158487406    rs1009012    A    T    191.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.964;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.501;QD=9.58;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:12,8:20:99:222,0,360
6    158489863    rs736741    C    T    311.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.286;QD=15.59;ReadPosRankSum=-0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449859    GT:AD:DP:GQ:PL    0/1:10,10:20:99:342,0,299
6    158490397    rs734882    A    G    66.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.32;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449859    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:97,0,68
6    158490779    rs751873    C    T    471.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449859    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:504,39,0
6    158497717    rs2296508    T    C    733.04    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.103;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=12.86;ReadPosRankSum=-0.463;SNPEFF_AMINO_ACID_CHANGE=V784;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158497658_158497814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:27,28:57:99:763,0,829
6    158499003    rs3818457    T    C    141.25    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=57.05;MQ0=0;MQRankSum=1.221;QD=17.66;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:3,5:8:94.68:171,0,95
6    158499097    rs3831094    G    GT    700.57    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.525;DB;DP=43;FS=0.0;HRun=2;HaplotypeScore=111.2419;IndelType=I;MQ=59.43;MQ0=0;MQRankSum=-0.17;QD=16.29;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:23,20:43:99:740,0,658
6    158499302    rs2296507    G    T    782.27    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=2.881;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.339;QD=18.19;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=A852;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158499196_158499313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:20,23:43:99:812,0,567
6    158502137    rs2256014    G    T    546.28    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=1.544;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.379;QD=21.85;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:8,17:25:99:576,0,158
6    158502590    rs173263    C    A    159.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=16;Dels=0.0;FS=7.83;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;MQRankSum=-1.485;QD=9.99;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:8,6:16:99:190,0,279
6    158504365    rs1744175    G    A    113.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.19;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:3,4:7:63.69:143,0,64
6    158504813    rs1750037    C    G    303.41    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.992;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=14.45;ReadPosRankSum=-0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:8,13:21:99:333,0,261
6    158505088    rs1744173    A    G    3586.25    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.392;DB;DP=230;DS;Dels=0.0;FS=4.7;HRun=2;HaplotypeScore=3.696;MQ=59.54;MQ0=0;MQRankSum=1.481;QD=15.59;ReadPosRankSum=2.216;SNPEFF_AMINO_ACID_CHANGE=G1030;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158505033_158505206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355585    GT:AD:DP:GQ:PL    0/1:96,132:230:99:3586,0,2984
6    158509750    rs350289    A    G    1135.19    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.455;DB;DP=92;Dels=0.0;FS=5.489;HRun=2;HaplotypeScore=2.8315;MQ=59.75;MQ0=0;MQRankSum=-1.61;QD=12.34;ReadPosRankSum=0.735;SNPEFF_AMINO_ACID_CHANGE=G1089;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158509692_158509804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367122    GT:AD:DP:GQ:PL    0/1:47,44:92:99:1165,0,1441
6    158515111    rs13217929    C    T    1971.78    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.081;DB;DP=132;Dels=0.0;FS=0.781;HRun=0;HaplotypeScore=1.7256;MQ=59.83;MQ0=0;MQRankSum=0.193;QD=14.94;ReadPosRankSum=0.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367121    GT:AD:DP:GQ:PL    0/1:64,67:132:99:2002,0,1989
6    158538441    rs35421004    CAA    C    181.73    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=33.3347;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=20.19;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367101    GT:AD:DP:GQ:PL    0/1:4,5:9:99:221,0,159
6    158539828    rs9356376    A    G    60.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=20.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367101    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:93,9,0
6    158569886    rs9356399    T    C    698.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367101    GT:AD:DP:GQ:PL    1/1:0,23:23:54.17:732,54,0
6    158570024    rs111582513    A    AT    118.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=10;HaplotypeScore=25.3292;IndelType=I;MQ=61.19;MQ0=0;QD=13.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367101    GT:AD:DP:GQ:PL    1/1:2,7:9:15.04:160,15,0
6    158571501    rs6929274    G    A    3036.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5279;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=D83;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158571485_158571621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERAC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367101    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3070,226,0
6    158571655    rs6929520    G    C    2956.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367101    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2990,223,0
6    158576212    .    T    C    94.28    PASS    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367101    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
6    158579237    rs6933016    T    C    547.87    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=1.295;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-2.205;QD=23.82;ReadPosRankSum=-0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367101    GT:AD:DP:GQ:PL    0/1:6,17:23:99:578,0,172
6    158591478    rs75327314    A    G    392.45    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=29;Dels=0.0;FS=2.235;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.637;QD=13.53;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438073    GT:AD:DP:GQ:PL    0/1:15,14:29:99:422,0,513
6    158596042    .    A    ATG    223.53    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DP=27;FS=0.0;HRun=0;HaplotypeScore=116.8377;IndelType=I;MQ=57.45;MQ0=0;MQRankSum=0.751;QD=8.28;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438073    GT:AD:DP:GQ:PL    0/1:18,8:27:8.43:262,0,8
6    158734876    rs9347227    G    A    79.55    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=15.91;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_6_158733692_158735300;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367094    GT:AD:DP:GQ:PL    0/1:1,4:5:18.55:110,0,19
6    158735087    rs9364951    C    T    602.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_AMINO_ACID_CHANGE=S13;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158733692_158735300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367094    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:636,48,0
6    158735090    rs7756620    T    C    601.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=D14;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158733692_158735300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367094    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:635,48,0
6    158735453    rs111935873    A    AAGATGC    579.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=37.3129;IndelType=I;MQ=48.54;MQ0=0;QD=64.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367094    GT:AD:DP:GQ:PL    1/1:2,7:9:21.07:621,21,0
6    158870081    rs705956    A    G    266.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.079;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.701;QD=13.33;ReadPosRankSum=0.945;SNPEFF_AMINO_ACID_CHANGE=R199;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158870028_158870208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367094    GT:AD:DP:GQ:PL    0/1:10,10:20:99:297,0,343
6    158870278    rs341136    T    G    152.21    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=58.78;MQ0=0;MQRankSum=1.009;QD=8.01;ReadPosRankSum=-1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367094    GT:AD:DP:GQ:PL    0/1:13,6:19:99:182,0,402
6    158910491    rs2274884    T    C    130.28    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=10.86;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367094    GT:AD:DP:GQ:PL    0/1:7,5:12:99:160,0,251
6    158910543    rs2274883    T    C    283.10    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.256;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=10.49;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367094    GT:AD:DP:GQ:PL    0/1:14,13:27:99:313,0,507
6    158923434    rs9364968    G    C    955.42    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.554;DB;DP=60;Dels=0.0;FS=2.223;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.523;QD=15.92;ReadPosRankSum=-0.487;SNPEFF_AMINO_ACID_CHANGE=T913;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158922710_158925210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367097    GT:AD:DP:GQ:PL    0/1:26,34:60:99:985,0,731
6    158923752    .    C    T    171.57    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DP=13;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.935;QD=13.2;ReadPosRankSum=1.2;SNPEFF_AMINO_ACID_CHANGE=P1019;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158922710_158925210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367097    GT:AD:DP:GQ:PL    0/1:6,7:13:99:202,0,170
6    158924088    rs914690    T    C    1412.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.49;MQ0=0;QD=31.39;SNPEFF_AMINO_ACID_CHANGE=D1131;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158922710_158925210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367097    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1446,114,0
6    158927651    rs3828712    A    G    461.67    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.015;DB;DP=56;Dels=0.0;FS=1.046;HRun=1;HaplotypeScore=0.9789;MQ=59.07;MQ0=0;MQRankSum=0.406;QD=8.24;ReadPosRankSum=0.102;SNPEFF_AMINO_ACID_CHANGE=L1519;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_158927610_158932860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367097    GT:AD:DP:GQ:PL    0/1:35,21:56:99:492,0,1020
6    158958106    rs930451    G    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM181;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314630    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
6    158994577    rs4709217    T    G    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM181;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314630    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
6    159047805    rs6149884    C    CTCACTCACACCTCACTCATGCCT    1970.07    PASS    AB=0.9;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.462;DB;DP=54;FS=0.0;HRun=0;HaplotypeScore=814.9181;IndelType=I;MQ=54.04;MQ0=0;MQRankSum=-3.236;QD=36.48;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL591025.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397897    GT:AD:DP:GQ:PL    0/1:48,6:54:99:2009,0,2573
6    159129476    rs142105819    GA    G    347.47    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=25;FS=3.565;HRun=1;HaplotypeScore=61.7633;IndelType=D;MQ=59.51;MQ0=0;MQRankSum=0.63;QD=13.9;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297239    GT:AD:DP:GQ:PL    0/1:14,11:25:99:386,0,586
6    159135087    rs117939611    C    T    63.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.422;QD=7.06;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297239    GT:AD:DP:GQ:PL    0/1:6,3:9:93.57:94,0,211
6    159146331    rs9457452    C    T    40.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297239    GT:AD:DP:GQ:PL    0/1:1,2:3:34.29:71,0,34
6    159146871    rs6455600    C    T    379.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=20;Dels=0.0;FS=5.929;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=18.99;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297239    GT:AD:DP:GQ:PL    0/1:8,12:20:99:410,0,232
6    159172854    rs3123094    G    A    103.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=10.35;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297239    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,162
6    159181885    rs3127155    G    A    388.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:421,33,0
6    159184462    rs2291387    A    G    1438.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.41;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=S274;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159184336_159184541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000367081    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1471,114,0
6    159185427    rs7775997    G    A    112.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.5784;MQ=57.66;MQ0=0;MQRankSum=0.47;QD=11.24;ReadPosRankSum=-0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    0/1:5,5:10:99:142,0,171
6    159185563    rs3123101    T    A    1119.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=L313Q;SNPEFF_CODON_CHANGE=cTa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159185527_159185908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000367081    GT:AD:DP:GQ:PL    1/1:0,35:36:87.27:1153,87,0
6    159187877    rs5881286    GAC    G    1116.62    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=60;FS=2.51;HRun=0;HaplotypeScore=309.2458;IndelType=D;MQ=58.72;MQ0=1;MQRankSum=1.526;QD=18.31;ReadPosRankSum=0.812;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392177    GT:AD:DP:GQ:PL    0/1:29,32:60:99:1156,0,1333
6    159188128    rs2242318    A    G    1545.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297239    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1579,120,0
6    159190800    rs3127177    C    G    1480.69    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.515;DB;DP=135;Dels=0.0;FS=7.084;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.262;QD=10.97;ReadPosRankSum=-0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297239    GT:AD:DP:GQ:PL    0/1:80,55:135:99:1511,0,2224
6    159191693    rs145292542    C    T    551.78    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.084;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.276;QD=19.03;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    0/1:11,18:29:99:582,0,343
6    159191788    rs3212308    C    T    1009.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.084;DB;DP=74;Dels=0.0;FS=0.953;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=1.256;QD=13.65;ReadPosRankSum=-1.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    0/1:37,37:74:99:1040,0,1097
6    159192045    rs1038537    A    G    960.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:994,75,0
6    159192119    rs6942167    C    T    128.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=12.85;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    0/1:5,5:10:99:158,0,151
6    159192214    rs56373854    T    TGG    1134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=60.6184;IndelType=I;MQ=61.02;MQ0=0;QD=54.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    1/1:0,21:21:63.22:1177,63,0
6    159192575    rs3127181    A    G    170.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
6    159197371    rs9346767    T    C    728.86    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.285;DB;DP=45;Dels=0.0;FS=2.14;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.307;QD=16.2;ReadPosRankSum=1.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    0/1:21,24:45:99:759,0,735
6    159204786    rs3123111    C    T    410.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:444,33,0
6    159205632    rs9364995    C    T    204.94    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.87;MQ0=0;MQRankSum=0.566;QD=18.63;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    0/1:3,8:11:91.87:235,0,92
6    159205668    rs3103003    G    A    505.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:538,39,0
6    159206251    rs2306746    T    C    460.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:493,36,0
6    159210662    rs71968460    TTTTC    T    903.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=100.4647;IndelType=D;MQ=49.88;MQ0=0;QD=45.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337147    GT:AD:DP:GQ:PL    1/1:3,17:20:51.17:946,51,0
6    159239315    rs6907017    G    C    130.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367075    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:163,15,0
6    159291490    rs6455609    G    C    443.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367072    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:477,36,0
6    159316430    rs9457507    C    T    473.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367072    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:507,39,0
6    159621126    .    C    T    302.58    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=13.16;ReadPosRankSum=-0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    0/1:12,11:23:99:333,0,365
6    159652931    rs420137    G    C    2416.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6716;MQ=59.17;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=E400Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2450,181,0
6    159653635    rs381639    C    G    883.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.51;SNPEFF_AMINO_ACID_CHANGE=A634;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,31:31:78.17:917,78,0
6    159654487    rs404435    G    T    838.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.17;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=P918;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:871,69,0
6    159654551    rs370434    C    G    382.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=25.47;SNPEFF_AMINO_ACID_CHANGE=Q1003E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,15:15:33.09:415,33,0
6    159654994    rs402388    A    C    560.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.06;SNPEFF_AMINO_ACID_CHANGE=V1087;SNPEFF_CODON_CHANGE=gtA/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:594,48,0
6    159655084    rs420054    C    G    907.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_AMINO_ACID_CHANGE=D1117E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,30:30:72.21:940,72,0
6    159655102    rs436743    A    G    935.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_AMINO_ACID_CHANGE=G1123;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,32:32:72.24:968,72,0
6    159655326    rs3003174    T    C    834.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=L1198P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,24:24:69.18:868,69,0
6    159655383    rs2501176    A    G    1766.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=29.94;SNPEFF_AMINO_ACID_CHANGE=Q1217R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1800,156,0
6    159655402    rs2932988    A    G    2213.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=30.33;SNPEFF_AMINO_ACID_CHANGE=P1223;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159652914_159655511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2247,195,0
6    159655593    rs2501177    C    T    1870.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.52;MQ0=0;QD=38.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1903,144,0
6    159655673    rs2932987    G    C    190.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:223,18,0
6    159657195    rs420339    G    T    2082.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=59.24;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2116,160,0
6    159657575    rs425906    C    T    226.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:260,21,0
6    159659481    rs419836    C    T    463.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:496,36,0
6    159659523    rs450538    A    G    888.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:921,69,0
6    159660779    rs71813262    GCCACCACCCGCCGCACGA    G    1659.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=338.2117;IndelType=D;MQ=45.58;MQ0=0;QD=79.04;SNPEFF_AMINO_ACID_CHANGE=ATTRRTT1408A;SNPEFF_CODON_CHANGE=gccaccacccgccgcacgacc/gcc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_6_159660549_159660989;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:8,13:21:39.13:1702,39,0
6    159660879    rs63253663    C    A    1264.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.41;SNPEFF_AMINO_ACID_CHANGE=T1441K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159660549_159660989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1298,102,0
6    159669953    rs28487880    G    C    168.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
6    159670276    rs294907    A    G    703.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.575;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,22:22:60.15:736,60,0
6    159670303    rs294906    G    A    387.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:421,33,0
6    159672455    rs294899    C    T    3779.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_AMINO_ACID_CHANGE=D1589;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159672334_159672564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    1/1:1,104:105:99:3780,289,0
6    159677498    rs294890    C    T    2486.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2519,193,0
6    159677840    rs294889    G    A    459.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:492,39,0
6    159682206    rs294883    C    T    3480.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3481,265,0
6    159686862    rs425916    C    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
6    159686981    rs111432320    CACAA    C    543.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=69.2166;IndelType=D;MQ=63.25;MQ0=0;QD=41.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:586,36,0
6    159687181    rs180849332    C    T    1648.71    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=3.072;DB;DP=104;Dels=0.0;FS=1.612;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.679;QD=15.85;ReadPosRankSum=0.324;SNPEFF_AMINO_ACID_CHANGE=R1721W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_159687116_159687277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340366    GT:AD:DP:GQ:PL    0/1:47,56:104:99:1679,0,1279
6    159687525    rs431829    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
6    159689133    rs383207    C    T    168.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
6    159692321    rs409691    G    A    1272.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1305,99,0
6    159692559    rs455162    G    A    448.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:481,36,0
6    159692596    rs419009    T    C    165.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297267    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
6    160224203    rs56130537    A    G    148    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=16;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.163;QD=9.25;ReadPosRankSum=2.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367034    GT:AD:DP:GQ:PL    0/1:10,6:16:99:178,0,312
6    160230911    rs9365098    A    G    213.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:246,21,0
6    160234625    rs13220869    G    C    450.37    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=-0.162;QD=8.66;ReadPosRankSum=1.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    0/1:37,15:52:99:480,0,1084
6    160234796    rs41267789    T    G    256.82    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=17;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=15.11;ReadPosRankSum=-2.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    0/1:5,12:17:99:287,0,126
6    160236976    rs7739963    T    C    371.16    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.182;DB;DP=30;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.102;QD=12.37;ReadPosRankSum=-0.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    0/1:16,14:30:99:401,0,530
6    160237489    rs2342480    T    C    244.74    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.022;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=2.328;QD=7.89;ReadPosRankSum=1.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    0/1:22,9:31:99:275,0,744
6    160237662    rs72142918    CTT    C    61.59    QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=41;FS=0.0;HRun=17;HaplotypeScore=270.5883;IndelType=D;MQ=52.21;MQ0=1;MQRankSum=0.0;QD=1.47;ReadPosRankSum=0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    0/1:31,8:41:99:101,0,417
6    160239461    rs41267791    G    A    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,103
6    160239712    rs5012271    C    T    624.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.454;DB;DP=30;Dels=0.0;FS=1.987;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=20.81;ReadPosRankSum=1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    0/1:10,20:30:99:654,0,240
6    160239835    rs9347350    T    C    134.23    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=13.222;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=14.91;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275275    GT:AD:DP:GQ:PL    0/1:4,5:9:99:164,0,142
6    160445493    rs2277071    G    A    307.65    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.81;QD=13.98;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    0/1:12,10:22:99:338,0,359
6    160445793    rs2277070    A    G    136.61    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.039;DB;DP=16;Dels=0.0;FS=2.663;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=8.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464636    GT:AD:DP:GQ:PL    0/1:11,5:16:99:167,0,332
6    160447988    rs6455680    A    G    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464636    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
6    160448324    rs8191754    C    G    207.24    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.63;QD=11.51;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=L252V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160448217_160448346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    0/1:11,7:18:99:237,0,343
6    160453561    rs4709390    T    G    474.55    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=44;Dels=0.0;FS=1.672;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.355;QD=10.79;ReadPosRankSum=0.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    0/1:25,19:44:99:505,0,848
6    160453978    rs1570070    A    G    4401.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.586;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=-0.637;QD=32.37;ReadPosRankSum=-0.229;SNPEFF_AMINO_ACID_CHANGE=S350;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160453974_160454139;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    1/1:1,135:136:99:4402,298,0
6    160461334    rs8191772    A    G    74.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
6    160464289    rs894817    G    A    1697.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=G530;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160464180_160464320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1730,132,0
6    160465421    rs3798182    G    T    102.36    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=14.62;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    0/1:3,4:7:87.25:132,0,87
6    160465456    rs3822842    C    T    111.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=14;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=7.94;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    0/1:8,6:14:99:141,0,291
6    160465753    rs609207    T    G    143.17    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=11.01;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    0/1:8,5:13:99:173,0,287
6    160469149    rs648253    G    A    34.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
6    160494409    rs629849    A    G    375.29    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.091;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.032;QD=10.42;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=R1619G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160494245_160494501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    0/1:19,17:36:99:405,0,643
6    160505199    rs614754    C    G    784.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_AMINO_ACID_CHANGE=L2017;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160504982_160505216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356956    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:818,60,0
6    160551204    rs683369    G    C    721.39    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=2.081;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=59.68;MQ0=0;MQRankSum=1.747;QD=9.88;ReadPosRankSum=0.597;SNPEFF_AMINO_ACID_CHANGE=L160F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160551136_160551239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324965    GT:AD:DP:GQ:PL    0/1:42,31:73:99:751,0,1301
6    160560824    rs34130495    G    A    660.63    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=46;Dels=0.0;FS=4.395;HRun=0;HaplotypeScore=1.6649;MQ=53.81;MQ0=0;MQRankSum=2.624;QD=14.36;ReadPosRankSum=0.265;SNPEFF_AMINO_ACID_CHANGE=G401S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160560685_160560899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324965    GT:AD:DP:GQ:PL    0/1:21,25:46:99:691,0,623
6    160560845    rs628031    A    G    431.85    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=44;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=0.9989;MQ=51.72;MQ0=0;MQRankSum=-1.398;QD=9.81;ReadPosRankSum=-0.793;SNPEFF_AMINO_ACID_CHANGE=M408V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160560685_160560899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324965    GT:AD:DP:GQ:PL    0/1:22,20:44:99:462,0,673
6    160560880    rs35167514    CATG    C    444.20    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=2.819;DB;DP=27;FS=1.828;HRun=0;HaplotypeScore=243.1967;IndelType=D;MQ=46.85;MQ0=0;MQRankSum=-3.476;QD=16.45;ReadPosRankSum=0.082;SNPEFF_AMINO_ACID_CHANGE=M420-;SNPEFF_CODON_CHANGE=atg/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_6_160560685_160560899;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324965    GT:AD:DP:GQ:PL    0/1:16,11:27:99:483,0,822
6    160560897    rs113569197    CTGGTAAGT    C    321.64    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=267.1893;IndelType=D;MQ=44.98;MQ0=0;MQRankSum=-2.4;QD=15.32;ReadPosRankSum=0.933;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_6_160560685_160560899;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000324965    GT:AD:DP:GQ:PL    0/1:16,5:21:99:361,0,1024
6    160564476    rs662138    C    G    270.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=58.45;MQ0=0;MQRankSum=0.53;QD=18.03;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324965    GT:AD:DP:GQ:PL    0/1:6,9:15:99:301,0,197
6    160645832    rs316003    C    T    1352.95    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.309;DB;DP=89;Dels=0.0;FS=2.713;HRun=0;HaplotypeScore=0.9734;MQ=59.6;MQ0=0;MQRankSum=-1.43;QD=15.2;ReadPosRankSum=-0.343;SNPEFF_AMINO_ACID_CHANGE=V502;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160645737_160645836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366953    GT:AD:DP:GQ:PL    0/1:41,47:89:99:1383,0,1333
6    160645921    rs3219197    C    CT    269.80    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.26;DB;DP=26;FS=0.0;HRun=8;HaplotypeScore=73.5402;IndelType=I;MQ=59.53;MQ0=0;MQRankSum=0.232;QD=10.38;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366953    GT:AD:DP:GQ:PL    0/1:15,11:26:99:309,0,285
6    160663230    rs17588242    T    C    310.06    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.657;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=19.38;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    0/1:6,10:16:99:340,0,197
6    160663651    rs315992    T    C    35.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=17.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
6    160666356    rs617217    C    G    70.71    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.1;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366953    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,146
6    160666660    rs11422119    A    AC    258.68    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.413;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=83.6781;IndelType=I;MQ=57.53;MQ0=0;MQRankSum=-0.053;QD=13.61;ReadPosRankSum=-0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    0/1:11,8:19:99:298,0,250
6    160668041    rs316021    C    T    85.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.16;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    0/1:8,4:12:99:116,0,294
6    160670282    rs316019    A    C    1781.60    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.023;DB;DP=120;Dels=0.0;FS=3.913;HRun=0;HaplotypeScore=0.9983;MQ=59.42;MQ0=0;MQRankSum=-0.325;QD=14.85;ReadPosRankSum=-0.157;SNPEFF_AMINO_ACID_CHANGE=S249A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160670248_160670416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    0/1:55,65:120:99:1812,0,1694
6    160670494    rs316018    A    G    362.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.273;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.905;QD=12.96;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    0/1:16,12:28:99:393,0,466
6    160670533    rs316017    C    T    284.32    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.951;QD=13.54;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    0/1:11,10:21:99:314,0,321
6    160671500    rs316016    T    C    565.45    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.305;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.998;QD=17.67;ReadPosRankSum=-0.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    0/1:13,19:32:99:595,0,456
6    160677614    rs2774230    G    C    681.21    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.928;DB;DP=39;Dels=0.0;FS=1.69;HRun=0;HaplotypeScore=0.7887;MQ=59.52;MQ0=0;MQRankSum=-0.157;QD=17.47;ReadPosRankSum=0.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489644    GT:AD:DP:GQ:PL    0/1:16,23:39:99:711,0,507
6    160679400    rs624249    C    A    796.22    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.57;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=56.25;MQ0=0;MQRankSum=1.272;QD=10.48;ReadPosRankSum=1.878;SNPEFF_AMINO_ACID_CHANGE=T109;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160679376_160679747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366952    GT:AD:DP:GQ:PL    0/1:42,34:76:99:826,0,1179
6    160769423    rs555754    G    A    95.98    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=8.73;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392145    GT:AD:DP:GQ:PL    0/1:6,5:11:99:126,0,171
6    160857762    rs34999803    GT    G    90.36    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;FS=0.0;HRun=12;HaplotypeScore=28.2315;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=1.034;QD=8.21;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275300    GT:AD:DP:GQ:PL    0/1:4,7:11:88.91:129,0,89
6    160857949    rs8187724    A    C    895.45    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.121;DB;DP=54;Dels=0.0;FS=2.348;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=16.58;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275300    GT:AD:DP:GQ:PL    0/1:25,29:54:99:925,0,775
6    160868701    rs2457574    G    A    354.41    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.695;QD=14.18;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275300    GT:AD:DP:GQ:PL    0/1:11,14:25:99:384,0,390
6    160874677    rs58364041    C    A    136.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=15;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=50.59;MQ0=0;MQRankSum=0.295;QD=9.13;ReadPosRankSum=-1.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275300    GT:AD:DP:GQ:PL    0/1:9,6:15:99:167,0,308
6    160885304    rs112831225    G    T    365.27    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=39;Dels=0.0;FS=7.889;HRun=0;HaplotypeScore=0.0;MQ=52.45;MQ0=0;MQRankSum=1.108;QD=9.37;ReadPosRankSum=1.477;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=LPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335388    GT:AD:DP:GQ:PL    0/1:25,14:39:99:395,0,717
6    160904069    rs139619798    G    A    821.06    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.19;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=2.017;QD=15.2;ReadPosRankSum=-1.307;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=LPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335388    GT:AD:DP:GQ:PL    0/1:26,28:54:99:851,0,835
6    160904256    rs2457569    C    G    104.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=8.72;ReadPosRankSum=0.929;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=LPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335388    GT:AD:DP:GQ:PL    0/1:8,4:12:99:135,0,256
6    160908670    rs5881361    G    GT    117.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=33.973;IndelType=I;MQ=57.04;MQ0=0;QD=19.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=LPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335388    GT:AD:DP:GQ:PL    1/1:1,5:6:15.04:159,15,0
6    160913931    rs61745804    C    T    1328.48    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.241;DB;DP=89;Dels=0.0;FS=7.438;HRun=0;HaplotypeScore=0.5784;MQ=59.01;MQ0=0;MQRankSum=-0.079;QD=14.93;ReadPosRankSum=0.042;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=LPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335388    GT:AD:DP:GQ:PL    0/1:42,47:89:99:1358,0,1010
6    160921566    rs9457930    T    G    440.39    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=15.73;ReadPosRankSum=-0.122;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=LPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335388    GT:AD:DP:GQ:PL    0/1:13,15:28:99:470,0,399
6    160922154    rs73594829    G    A    400.04    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.276;QD=14.29;ReadPosRankSum=0.875;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=LPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335388    GT:AD:DP:GQ:PL    0/1:15,13:28:99:430,0,473
6    160963964    rs41265934    C    G    336.63    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.286;QD=15.3;ReadPosRankSum=-1.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:10,12:22:99:367,0,337
6    160969096    rs4708871    C    T    364.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:398,33,0
6    160969629    rs1801693    A    G    1227.05    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.394;DB;DP=76;Dels=0.0;FS=3.285;HRun=0;HaplotypeScore=0.0;MQ=58.51;MQ0=0;MQRankSum=-1.299;QD=16.15;ReadPosRankSum=1.1;SNPEFF_AMINO_ACID_CHANGE=M1679T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_160969510_160969691;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:33,43:76:99:1257,0,872
6    160977375    rs9457938    A    G    34.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=1.38;QD=5.7;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:4,2:6:64.18:64,0,136
6    161021873    rs7752408    G    C    427.67    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.123;QD=19.44;ReadPosRankSum=-0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:9,13:22:99:458,0,264
6    161027330    rs6455694    T    C    346.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:379,27,0
6    161032329    rs6455696    G    C    73.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=0.406;QD=12.29;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,104
6    161032481    rs7761377    A    G    1072.51    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.371;DB;DP=88;Dels=0.0;FS=1.7;HRun=0;HaplotypeScore=1.9663;MQ=50.54;MQ0=0;MQRankSum=0.576;QD=12.19;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:43,45:88:99:1103,0,1451
6    161032668    rs113727842    A    G    1195.98    MQFilter40    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=219;DS;Dels=0.0;FS=15.75;HRun=1;HaplotypeScore=0.9332;MQ=20.48;MQ0=114;MQRankSum=1.548;QD=5.46;ReadPosRankSum=-0.551;SNPEFF_AMINO_ACID_CHANGE=T843;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161032594_161032753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:135,84:219:99:1226,0,1325
6    161055114    rs139659585    T    C    37.98    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=17.14;MQ0=4;MQRankSum=0.358;QD=4.22;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:3,6:9:40.31:68,0,40
6    161055924    rs7746421    C    G    63.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.22;MQ0=0;MQRankSum=1.537;QD=9.08;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:3,3:7:93.57:94,0,102
6    161055947    rs7746435    C    A    110.09    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.57;MQ0=0;MQRankSum=1.92;QD=13.76;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:3,5:8:98.95:140,0,99
6    161056112    rs9365196    C    T    333.11    MQFilter40;QDFilter2    AB=0.924;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=250;DS;Dels=0.0;FS=5.781;HRun=1;HaplotypeScore=0.0;MQ=13.01;MQ0=208;MQRankSum=0.895;QD=1.33;ReadPosRankSum=0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:231,19:250:99:363,0,457
6    161071212    rs1569933    T    A    237.17    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.78;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=13.95;ReadPosRankSum=-1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    0/1:8,9:17:99:267,0,292
6    161085295    rs1853021    A    G    629.97    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.0;MQ0=68;QD=6.12;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316300    GT:AD:DP:GQ:PL    1/1:0,103:103:60.14:663,60,0
6    161123185    rs1950562    T    C    150.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.22;MQ0=0;MQRankSum=-1.555;QD=8.37;ReadPosRankSum=-0.578;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297289    GT:AD:DP:GQ:PL    0/1:10,8:18:99:181,0,337
6    161123413    rs2314851    G    T    120.70    MQFilter40    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=53;Dels=0.0;FS=4.973;HRun=0;HaplotypeScore=0.734;MQ=23.94;MQ0=12;MQRankSum=1.458;QD=2.28;ReadPosRankSum=1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:41,11:53:99:151,0,665
6    161123451    rs4252185    T    C    176.50    MQFilter40    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.712;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=33.59;MQ0=8;MQRankSum=1.065;QD=5.69;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:22,9:31:99:206,0,355
6    161128617    rs4252075    G    A    514.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.806;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.57;MQ0=0;MQRankSum=-0.765;QD=21.42;ReadPosRankSum=0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:8,16:24:99:544,0,237
6    161128922    rs4252076    A    G    346.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=48.54;MQ0=0;MQRankSum=-0.572;QD=8.25;ReadPosRankSum=-0.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:24,18:42:99:377,0,851
6    161129013    rs59614420    G    A    72.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.5;MQ0=0;MQRankSum=0.421;QD=9.12;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:4,4:8:99:103,0,145
6    161132146    rs4757    C    T    1370.17    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=1.315;DB;DP=131;Dels=0.0;FS=2.385;HRun=1;HaplotypeScore=2.3893;MQ=57.31;MQ0=0;MQRankSum=1.344;QD=10.46;ReadPosRankSum=1.247;SNPEFF_AMINO_ACID_CHANGE=N110;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161132109_161132223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:82,48:131:99:1400,0,2473
6    161134273    rs4252096    C    G    271.30    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.647;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=1.14;QD=13.57;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366924    GT:AD:DP:GQ:PL    0/1:11,9:20:99:301,0,307
6    161134305    rs113752311    A    AT    75    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=64.7605;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=5.36;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366924    GT:AD:DP:GQ:PL    0/1:8,5:14:83.36:114,0,83
6    161137518    rs4252107    T    C    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366924    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
6    161137523    rs4252108    T    A    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366924    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
6    161137663    rs4252109    T    G    346.13    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=22;Dels=0.0;FS=1.897;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.165;QD=15.73;ReadPosRankSum=1.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366924    GT:AD:DP:GQ:PL    0/1:10,12:22:99:376,0,313
6    161137779    rs14224    T    C    238.43    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.878;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.274;QD=9.17;ReadPosRankSum=-1.387;SNPEFF_AMINO_ACID_CHANGE=C257;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161137677_161137795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:17,9:26:99:268,0,521
6    161137990    rs783147    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418964    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    161139480    rs1130656    C    T    1297    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8499;MQ=59.51;MQ0=0;MQRankSum=-1.414;QD=13.8;ReadPosRankSum=0.944;SNPEFF_AMINO_ACID_CHANGE=F314;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161139326_161139488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:44,50:94:99:1327,0,1199
6    161139502    rs2295368    G    A    1344.44    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=0.294;DB;DP=72;Dels=0.0;FS=2.81;HRun=0;HaplotypeScore=1.7987;MQ=59.36;MQ0=0;MQRankSum=0.809;QD=18.67;ReadPosRankSum=1.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:29,43:72:99:1374,0,815
6    161139857    rs13231    A    G    741.84    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.286;QD=16.13;ReadPosRankSum=-0.385;SNPEFF_AMINO_ACID_CHANGE=Q361;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161139725_161139870;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:22,24:46:99:772,0,713
6    161143376    rs4252117    A    G    428.15    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.327;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.192;QD=16.47;ReadPosRankSum=1.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:12,14:26:99:458,0,395
6    161143608    rs4252120    T    C    1721.89    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=127;Dels=0.0;FS=2.39;HRun=0;HaplotypeScore=1.6809;MQ=59.82;MQ0=0;MQRankSum=0.473;QD=13.56;ReadPosRankSum=-1.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:65,62:127:99:1752,0,1966
6    161152240    rs4252125    G    A    894.35    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.687;DB;DP=66;Dels=0.0;FS=0.993;HRun=1;HaplotypeScore=1.8305;MQ=59.3;MQ0=0;MQRankSum=-0.302;QD=13.55;ReadPosRankSum=0.532;SNPEFF_AMINO_ACID_CHANGE=D472N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161152083_161152264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    0/1:34,32:66:99:924,0,1058
6    161152294    rs4252126    A    G    421.48    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.515;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.117;QD=9.8;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297289    GT:AD:DP:GQ:PL    0/1:26,17:43:99:451,0,870
6    161153080    rs4252130    A    C    146.91    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.99;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297289    GT:AD:DP:GQ:PL    0/1:1,6:7:19.59:177,0,20
6    161159619    rs4252195    T    C    730.02    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=45;Dels=0.0;FS=1.263;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.346;QD=16.22;ReadPosRankSum=-1.396;SNPEFF_AMINO_ACID_CHANGE=L18;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161156054_161159644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316325    GT:AD:DP:GQ:PL    0/1:18,26:45:99:760,0,557
6    161160083    rs2859879    G    A    2113.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308192    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2147,159,0
6    161173946    rs11060    T    G    596.50    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=3.105;DB;DP=58;Dels=0.0;FS=1.056;HRun=2;HaplotypeScore=0.734;MQ=48.36;MQ0=4;MQRankSum=-1.544;QD=10.28;ReadPosRankSum=1.473;SNPEFF_AMINO_ACID_CHANGE=G162;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161173932_161174317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316325    GT:AD:DP:GQ:PL    0/1:33,25:58:99:626,0,992
6    161174138    rs6690    A    G    69.31    MQFilter40    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=12.05;MQ0=26;MQRankSum=1.231;QD=2.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467466    GT:AD:DP:GQ:PL    0/1:23,8:31:21.40:99,0,21
6    161469455    rs9346846    T    A    573.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544209    GT:AD:DP:GQ:PL    1/1:0,22:22:54.15:606,54,0
6    161469774    rs4559074    G    A    4411.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.05;MQ0=0;QD=37.71;SNPEFF_AMINO_ACID_CHANGE=R157H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161469648_161471011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348824    GT:AD:DP:GQ:PL    1/1:0,117:117:99:4412,328,0
6    161502094    rs9347479    C    T    530.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348824    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:564,42,0
6    161509003    rs9355332    T    A    438.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540205    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:471,36,0
6    161514173    rs3736569    G    A    310.05    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.352;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.859;QD=18.24;ReadPosRankSum=0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348824    GT:AD:DP:GQ:PL    0/1:6,11:17:99:340,0,195
6    161517964    rs2177587    T    C    159.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348824    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:192,15,0
6    161518381    rs6905734    A    G    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348824    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
6    161519350    rs138655940    CCTG    C    3395.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;FS=0.0;HRun=0;HaplotypeScore=706.8829;IndelType=D;MQ=59.63;MQ0=0;QD=23.26;SNPEFF_AMINO_ACID_CHANGE=PA1185P;SNPEFF_CODON_CHANGE=cctgct/cct;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_6_161519310_161519459;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366920    GT:AD:DP:GQ:PL    1/1:55,89:146:99:3396,259,0
6    161529678    rs2272197    A    C    145.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.45;QD=14.59;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348824    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,178
6    161531006    rs4709493    G    C    882.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539610    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:916,75,0
6    161532855    rs67367504    CT    C    2405.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=4;HaplotypeScore=202.5852;IndelType=D;MQ=60.12;MQ0=0;QD=34.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539610    GT:AD:DP:GQ:PL    1/1:1,69:70:99:2448,205,0
6    161551876    rs55666532    G    A    1255.53    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.222;DB;DP=115;Dels=0.0;FS=0.822;HRun=1;HaplotypeScore=1.7608;MQ=59.64;MQ0=0;MQRankSum=0.006;QD=10.92;ReadPosRankSum=-1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540111    GT:AD:DP:GQ:PL    0/1:68,47:115:99:1286,0,2182
6    161557662    rs3734462    G    A    312.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.53;DB;DP=24;Dels=0.0;FS=1.935;HRun=0;HaplotypeScore=0.7887;MQ=59.22;MQ0=0;MQRankSum=0.144;QD=13.02;ReadPosRankSum=-0.087;SNPEFF_AMINO_ACID_CHANGE=S187;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_161557287_161557666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457520    GT:AD:DP:GQ:PL    0/1:12,12:24:99:342,0,360
6    161557703    rs6455706    A    G    514.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=28.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320285    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:548,42,0
6    161557775    rs3734463    C    G    150.77    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=21.54;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320285    GT:AD:DP:GQ:PL    0/1:2,5:7:61.58:181,0,62
6    161970231    rs509495    T    A    74.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=12.38;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338468    GT:AD:DP:GQ:PL    0/1:3,3:6:63.16:104,0,63
6    162204946    rs3016558    A    C    96.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=13.83;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338468    GT:AD:DP:GQ:PL    0/1:3,4:7:96.31:127,0,96
6    162622304    rs4709583    A    G    1181.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338468    GT:AD:DP:GQ:PL    1/1:0,40:40:93.27:1214,93,0
6    162864317    rs2075923    A    G    876.24    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.69;DB;DP=53;Dels=0.0;FS=3.746;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.943;QD=16.53;ReadPosRankSum=-0.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338468    GT:AD:DP:GQ:PL    0/1:23,30:53:99:906,0,595
6    163149055    rs9347683    A    C    383.77    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.106;QD=14.76;ReadPosRankSum=-1.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PACRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337019    GT:AD:DP:GQ:PL    0/1:12,14:26:99:414,0,410
6    163956329    rs9364692    G    A    255.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QKI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544436    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
6    163991926    .    CT    C    49.08    QDFilter2    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.236;DP=36;FS=0.0;HRun=17;HaplotypeScore=293.8869;IndelType=D;MQ=53.57;MQ0=0;MQRankSum=1.325;QD=1.36;ReadPosRankSum=1.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=QKI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275262    GT:AD:DP:GQ:PL    0/1:22,11:36:88.11:88,0,132
6    165693624    rs1413100    C    T    1120.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543069    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1154,84,0
6    165703633    rs5881641    CA    C    381.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=33.4877;IndelType=D;MQ=60.98;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230301    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:424,33,0
6    165756736    rs11753599    A    G    68.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.03;MQ0=0;MQRankSum=-1.231;QD=13.67;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:98,0,68
6    165801790    rs1511746    G    A    973.92    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.693;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=1.1;QD=12.49;ReadPosRankSum=0.283;SNPEFF_AMINO_ACID_CHANGE=L592;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_165801787_165801942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392126    GT:AD:DP:GQ:PL    0/1:43,35:78:99:1004,0,1332
6    165806003    rs62443762    T    C    173.91    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.656;QD=13.38;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    0/1:6,7:13:99:204,0,215
6    165810136    rs220790    C    A    257.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
6    165826898    rs5881647    TG    T    767    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=122.6971;IndelType=D;MQ=57.81;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    1/1:1,19:22:65.65:809,66,0
6    165827194    rs63201662    A    G    445.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:478,39,0
6    165829926    rs517550    G    A    168.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:202,18,0
6    165845027    rs148704004    AATATACTATATATC    A    543.49    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=2.259;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=222.4522;IndelType=D;MQ=50.75;MQ0=0;MQRankSum=-1.097;QD=28.6;ReadPosRankSum=-0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    0/1:13,6:19:99:583,0,1338
6    165846658    rs79469867    T    C    313.59    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.981;DB;DP=20;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;MQRankSum=-0.634;QD=15.68;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    0/1:7,13:20:99:344,0,228
6    165862295    rs2274577    A    G    84.34    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.061;QD=5.62;ReadPosRankSum=1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    0/1:11,4:15:99:114,0,379
6    165863695    rs74556251    C    CA    2420.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=1;HaplotypeScore=114.1919;IndelType=I;MQ=60.58;MQ0=0;QD=43.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    1/1:1,55:56:99:2463,166,0
6    165989776    rs1410479    C    T    749.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343842    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:782,60,0
6    166355687    rs300111    G    A    262.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.255;DB;DP=28;Dels=0.0;FS=3.556;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.255;QD=9.38;ReadPosRankSum=-0.487;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL590482.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516387    GT:AD:DP:GQ:PL    0/1:16,12:28:99:293,0,543
6    166355791    .    T    TAC    975.92    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.93;DP=55;FS=1.268;HRun=0;HaplotypeScore=184.7481;IndelType=I;MQ=61.4;MQ0=0;MQRankSum=2.97;QD=17.74;ReadPosRankSum=-1.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL590482.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516387    GT:AD:DP:GQ:PL    0/1:31,23:55:99:1015,0,759
6    166401512    rs697475    T    A    829.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C6orf176;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455853    GT:AD:DP:GQ:PL    1/1:0,25:25:69.18:862,69,0
6    166571935    rs35819705    C    T    280.09    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=10.77;ReadPosRankSum=0.448;SNPEFF_AMINO_ACID_CHANGE=A334;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_166571148_166572076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=T;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366871    GT:AD:DP:GQ:PL    0/1:16,10:26:99:310,0,460
6    166574246    rs3127334    G    A    318.86    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.154;DB;DP=22;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.297;QD=14.49;ReadPosRankSum=0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=T;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461348    GT:AD:DP:GQ:PL    0/1:12,10:22:99:349,0,312
6    166576161    rs2278678    T    A    65.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=9.42;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=T;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461348    GT:AD:DP:GQ:PL    0/1:4,3:7:95.95:96,0,134
6    166579270    rs2305089    C    T    1875.71    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.295;DB;DP=175;Dels=0.0;FS=3.604;HRun=0;HaplotypeScore=6.1415;MQ=59.61;MQ0=0;MQRankSum=-0.079;QD=10.66;ReadPosRankSum=0.113;SNPEFF_AMINO_ACID_CHANGE=G177D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_166579194_166579328;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=T;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000296946    GT:AD:DP:GQ:PL    0/1:101,74:175:99:1906,0,2927
6    166720806    rs911203    G    C    258.48    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-1.312;QD=18.46;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=S275;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_166719168_166721871;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322583    GT:AD:DP:GQ:PL    0/1:5,9:14:99:288,0,104
6    166736235    rs66838775    CA    C    658.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=9;HaplotypeScore=208.4047;IndelType=D;MQ=52.9;MQ0=0;QD=19.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488773    GT:AD:DP:GQ:PL    1/1:7,26:33:79.89:701,80,0
6    166736362    rs7088    C    T    929.58    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=2.792;DB;DP=78;Dels=0.0;FS=1.944;HRun=0;HaplotypeScore=0.9998;MQ=57.04;MQ0=0;MQRankSum=1.081;QD=11.92;ReadPosRankSum=-1.027;SNPEFF_AMINO_ACID_CHANGE=S141;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_166736345_166736374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361731    GT:AD:DP:GQ:PL    0/1:46,32:78:99:960,0,1226
6    166737980    rs4710041    G    A    757.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494682    GT:AD:DP:GQ:PL    1/1:1,21:22:57.19:791,57,0
6    166739684    rs10806847    G    A    781.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361731    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:815,60,0
6    166741921    rs9459653    T    A    327.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361731    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:361,33,0
6    166743760    rs9348119    G    C    327.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361731    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:361,27,0
6    166755975    rs10862    T    C    71.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478705    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:104,9,0
6    166755979    rs11168    A    C    73.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFT2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478705    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
6    166826304    rs760670    T    C    47.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.56;SNPEFF_AMINO_ACID_CHANGE=S627;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_166826236_166826375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405189    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
6    166827020    rs2235296    A    G    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    166827436    rs2235295    T    C    517.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265678    GT:AD:DP:GQ:PL    1/1:0,20:20:45.12:550,45,0
6    166862136    rs7746519    G    A    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
6    166921499    .    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506565    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
6    166921571    rs9459685    A    C    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506565    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:65,0,33
6    166952264    rs1003857    G    A    902.43    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.168;DB;DP=61;Dels=0.02;FS=7.66;HRun=0;HaplotypeScore=3.9322;MQ=60.0;MQ0=0;MQRankSum=1.335;QD=14.56;ReadPosRankSum=-1.196;SNPEFF_AMINO_ACID_CHANGE=G20;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_166952156_166952272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507371    GT:AD:DP:GQ:PL    0/1:24,37:61:99:932,0,737
6    167114817    rs3830759    A    ACT    598.75    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.662;DB;DP=32;FS=1.446;HRun=0;HaplotypeScore=86.5989;IndelType=I;MQ=57.8;MQ0=0;MQRankSum=-0.14;QD=18.14;ReadPosRankSum=0.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503859    GT:AD:DP:GQ:PL    0/1:20,13:32:99:638,0,702
6    167115448    rs66759203    C    T    378.47    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.299;DB;DP=25;Dels=0.0;FS=7.952;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.734;QD=15.14;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503859    GT:AD:DP:GQ:PL    0/1:12,13:25:99:408,0,372
6    167115912    rs139569610    TGCTTGTCTAGC    T    2928.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=527.7196;IndelType=D;MQ=46.64;MQ0=0;QD=59.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503859    GT:AD:DP:GQ:PL    1/1:12,37:49:99:2970,111,0
6    167271711    rs943687    T    C    1019.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=51.77;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=T34A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167271688_167271747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000503859    GT:AD:DP:GQ:PL    1/1:0,32:33:87.25:1053,87,0
6    167271716    rs9347162    T    C    918.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.4071;MQ=51.52;MQ0=0;QD=26.23;SNPEFF_AMINO_ACID_CHANGE=E32G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167271688_167271747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000503859    GT:AD:DP:GQ:PL    1/1:0,35:35:81.21:951,81,0
6    167344583    rs13213697    A    G    672.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=48;Dels=0.0;FS=1.134;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-0.134;QD=14.01;ReadPosRankSum=-0.32;SNPEFF_AMINO_ACID_CHANGE=L134;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167344532_167344606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASET2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366855    GT:AD:DP:GQ:PL    0/1:24,24:48:99:703,0,748
6    167352104    rs3777722    C    A    683.44    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.158;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.24;MQ0=0;MQRankSum=-0.972;QD=12.43;ReadPosRankSum=0.549;SNPEFF_AMINO_ACID_CHANGE=R226M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167352100_167352141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASET2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310843    GT:AD:DP:GQ:PL    0/1:30,25:55:99:713,0,961
6    167413539    rs12212247    T    C    343.31    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.448;QD=14.3;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR1OP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349556    GT:AD:DP:GQ:PL    0/1:11,13:24:99:373,0,358
6    167417775    rs150980464    G    T    1158.74    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=67;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=0.9958;MQ=59.66;MQ0=0;MQRankSum=-0.095;QD=17.29;ReadPosRankSum=-0.07;SNPEFF_AMINO_ACID_CHANGE=E108D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167417752_167417889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR1OP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349556    GT:AD:DP:GQ:PL    0/1:29,38:67:99:1189,0,888
6    167424293    rs1322077    T    C    117.39    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.633;QD=10.67;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR1OP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349556    GT:AD:DP:GQ:PL    0/1:5,6:11:99:147,0,143
6    167436159    rs3752520    T    C    135.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=15;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.355;QD=9.04;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR1OP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349556    GT:AD:DP:GQ:PL    0/1:9,6:15:99:166,0,297
6    167440128    rs2282861    C    T    268.44    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.951;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.599;QD=12.78;ReadPosRankSum=-0.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR1OP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496181    GT:AD:DP:GQ:PL    0/1:11,10:21:99:298,0,370
6    167453245    rs151604    T    C    859.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR1OP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349556    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:893,66,0
6    167453519    rs72135650    A    AT    697    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.979;DB;DP=47;FS=0.0;HRun=12;HaplotypeScore=230.7202;IndelType=I;MQ=59.08;MQ0=0;MQRankSum=0.929;QD=14.83;ReadPosRankSum=-0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR1OP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420493    GT:AD:DP:GQ:PL    1/1:14,30:47:19.73:739,20,0
6    167550042    rs2071171    C    T    1336.32    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=89;Dels=0.0;FS=1.77;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.348;QD=15.01;ReadPosRankSum=1.587;SNPEFF_AMINO_ACID_CHANGE=T108;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167549728_167553184;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341935    GT:AD:DP:GQ:PL    0/1:39,50:89:99:1366,0,1096
6    167571048    rs6902566    T    C    270.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=H91R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167569759_167571817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366834    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:303,24,0
6    167584353    .    C    T    34.75    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.76;MQ0=37;QD=0.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366832    GT:AD:DP:GQ:PL    1/1:32,7:39:6.01:66,6,0
6    167587493    .    G    A    525.74    MQFilter40    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.14;MQ0=13;MQRankSum=-3.229;QD=5.21;ReadPosRankSum=-1.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382669    GT:AD:DP:GQ:PL    0/1:59,42:101:99:556,0,1454
6    167590454    rs71571482    G    A    124.37    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.432;DB;DP=45;Dels=0.0;FS=6.226;HRun=0;HaplotypeScore=0.0;MQ=40.76;MQ0=3;MQRankSum=-3.404;QD=2.76;ReadPosRankSum=-1.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382669    GT:AD:DP:GQ:PL    0/1:31,14:45:99:154,0,849
6    167590541    rs3737098    G    A    637.37    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.63;DB;DP=75;Dels=0.0;FS=7.51;HRun=0;HaplotypeScore=2.5476;MQ=35.3;MQ0=9;MQRankSum=-2.751;QD=8.5;ReadPosRankSum=-0.141;SNPEFF_AMINO_ACID_CHANGE=T139;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167590485_167590622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366832    GT:AD:DP:GQ:PL    0/1:37,37:75:99:667,0,956
6    167590574    rs2989541    G    C    1036    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.38;MQ0=14;QD=19.19;SNPEFF_AMINO_ACID_CHANGE=A150;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167590485_167590622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366832    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1069,102,0
6    167590739    rs62436856    C    T    34.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.67;MQ0=5;QD=3.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382669    GT:AD:DP:GQ:PL    1/1:0,10:10:6.01:66,6,0
6    167591956    .    C    T    827.05    MQFilter40    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.829;DP=139;Dels=0.0;FS=5.983;HRun=1;HaplotypeScore=0.9469;MQ=23.84;MQ0=39;MQRankSum=-1.248;QD=5.95;ReadPosRankSum=-0.405;SNPEFF_AMINO_ACID_CHANGE=Q195*;SNPEFF_CODON_CHANGE=Caa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_6_167591872_167592030;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000366832    GT:AD:DP:GQ:PL    0/1:75,63:139:99:857,0,1104
6    167592107    .    C    A    51.99    MQFilter40;QDFilter2    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9494;MQ=20.64;MQ0=8;MQRankSum=-1.938;QD=0.95;ReadPosRankSum=2.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366832    GT:AD:DP:GQ:PL    0/1:40,15:55:81.98:82,0,523
6    167592464    rs60509455    A    G    409.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.76;MQ0=5;QD=22.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464222    GT:AD:DP:GQ:PL    1/1:0,18:18:39.10:442,39,0
6    167592524    rs2989545    T    C    705.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.02;MQ0=2;QD=26.14;SNPEFF_AMINO_ACID_CHANGE=L228P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167592499_167592610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366832    GT:AD:DP:GQ:PL    1/1:0,27:27:63.15:739,63,0
6    167592576    rs60976240    G    A    709.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.3;MQ0=1;QD=29.58;SNPEFF_AMINO_ACID_CHANGE=T245;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167592499_167592610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366832    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:743,60,0
6    167592656    rs4710193    G    C    249.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.96;MQ0=0;QD=31.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCP10L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464222    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:282,24,0
6    167622070    rs671511    C    T    1028.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.88;MQ0=2;QD=22.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-568A7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404577    GT:AD:DP:GQ:PL    1/1:0,46:46:90.20:1062,90,0
6    167622205    rs28588506    G    A    3911.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2312;MQ=35.76;MQ0=13;QD=24.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-568A7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404577    GT:AD:DP:GQ:PL    1/1:0,157:159:99:3912,337,0
6    167622389    rs6931756    A    G    820.50    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.596;DB;DP=80;Dels=0.0;FS=5.215;HRun=1;HaplotypeScore=0.0;MQ=48.59;MQ0=4;MQRankSum=0.667;QD=10.26;ReadPosRankSum=-1.404;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-568A7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404577    GT:AD:DP:GQ:PL    0/1:46,34:80:99:850,0,1237
6    167622419    rs6936429    T    C    653.43    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.615;DB;DP=66;Dels=0.0;FS=7.867;HRun=0;HaplotypeScore=0.9469;MQ=50.62;MQ0=3;MQRankSum=2.432;QD=9.9;ReadPosRankSum=-0.007;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-568A7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404577    GT:AD:DP:GQ:PL    0/1:39,27:66:99:683,0,938
6    167622492    rs12174486    A    C    212.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.045;DB;DP=20;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=0.0;MQ=56.41;MQ0=0;MQRankSum=0.347;QD=10.63;ReadPosRankSum=0.656;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-568A7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404577    GT:AD:DP:GQ:PL    0/1:12,8:20:99:243,0,382
6    167622560    rs4709153    C    G    121.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP11-568A7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404577    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
6    167711559    rs113906647    G    C    713.66    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.51;MQ0=0;MQRankSum=0.901;QD=15.18;ReadPosRankSum=-0.308;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000230256    GT:AD:DP:GQ:PL    0/1:23,24:47:99:744,0,770
6    167717268    rs2072764    T    C    30.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.73;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230256    GT:AD:DP:GQ:PL    0/1:2,2:4:60.89:61,0,66
6    167717659    rs2072765    C    T    905.22    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.853;DB;DP=73;Dels=0.0;FS=3.845;HRun=0;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;MQRankSum=0.113;QD=12.4;ReadPosRankSum=-2.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230256    GT:AD:DP:GQ:PL    0/1:37,36:73:99:935,0,1012
6    167719160    rs2072766    C    T    208.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230256    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
6    167719436    rs2072767    G    A    2029.39    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.907;DB;DP=139;Dels=0.0;FS=6.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.12;QD=14.6;ReadPosRankSum=1.081;SNPEFF_AMINO_ACID_CHANGE=V250I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167719403_167719538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366829    GT:AD:DP:GQ:PL    0/1:68,71:139:99:2059,0,2094
6    167721073    rs34676408    A    G    37.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230256    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
6    167721253    rs3817768    C    G    252.75    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=44;Dels=0.0;FS=1.482;HRun=0;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=1.225;QD=5.74;ReadPosRankSum=0.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230256    GT:AD:DP:GQ:PL    0/1:32,12:44:99:283,0,998
6    167728728    rs142367645    C    T    1147.17    MQFilter40    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.732;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7217;MQ=34.83;MQ0=8;MQRankSum=-0.486;QD=11.25;ReadPosRankSum=-1.852;SNPEFF_AMINO_ACID_CHANGE=R346C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167728675_167729476;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366829    GT:AD:DP:GQ:PL    0/1:48,54:102:99:1177,0,968
6    167728774    rs663606    T    C    2510.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4948;MQ=26.99;MQ0=15;QD=17.8;SNPEFF_AMINO_ACID_CHANGE=M361T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167728675_167729476;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366829    GT:AD:DP:GQ:PL    1/1:0,141:141:99:2543,246,0
6    167728775    rs9459921    G    A    401.19    MQFilter40    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=5.01;DB;DP=143;Dels=0.0;FS=6.851;HRun=0;HaplotypeScore=2.4948;MQ=27.14;MQ0=15;MQRankSum=-0.618;QD=2.81;ReadPosRankSum=-1.36;SNPEFF_AMINO_ACID_CHANGE=M361I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167728675_167729476;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366829    GT:AD:DP:GQ:PL    0/1:80,63:143:99:431,0,1617
6    167729084    rs442368    C    T    339.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.54;MQ0=1;QD=26.15;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC93A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000230256    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:373,33,0
6    167751994    rs3841396    C    CAG    222.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=11.6861;IndelType=I;MQ=62.13;MQ0=0;QD=44.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239587    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:264,15,0
6    167752312    .    G    GTTCC    557.89    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=84.0521;IndelType=I;MQ=61.46;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512917    GT:AD:DP:GQ:PL    1/1:13,9:22:27.09:600,27,0
6    167753691    rs877653    C    T    661.06    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=3.166;DB;DP=38;Dels=0.0;FS=1.354;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.254;QD=17.4;ReadPosRankSum=-1.045;SNPEFF_AMINO_ACID_CHANGE=S101;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167753593_167755375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239587    GT:AD:DP:GQ:PL    0/1:15,23:38:99:691,0,364
6    167754661    rs909545    A    G    1501.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=59.56;MQ0=0;QD=28.32;SNPEFF_AMINO_ACID_CHANGE=R352G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167753593_167755266;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540954    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1534,120,0
6    167754702    rs909546    C    T    615.85    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=53;Dels=0.0;FS=3.91;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-0.7;QD=11.62;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=D365;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167753593_167755266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540954    GT:AD:DP:GQ:PL    0/1:32,21:53:99:646,0,999
6    167771426    rs4616972    G    A    202.65    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=26;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=27.74;MQ0=10;MQRankSum=0.766;QD=7.79;ReadPosRankSum=-0.884;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508373    GT:AD:DP:GQ:PL    0/1:13,13:26:99:233,0,197
6    167773025    rs71920153    C    CT    86.32    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.558;DB;DP=22;FS=0.0;HRun=12;HaplotypeScore=79.0587;IndelType=I;MQ=59.7;MQ0=0;MQRankSum=0.05;QD=3.92;ReadPosRankSum=-0.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515138    GT:AD:DP:GQ:PL    0/1:14,7:22:99:125,0,170
6    167786551    rs146852129    T    G    125.30    MQFilter40    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.98;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=39.31;MQ0=2;MQRankSum=0.663;QD=7.83;ReadPosRankSum=0.201;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460930    GT:AD:DP:GQ:PL    0/1:7,9:16:99:155,0,125
6    167786750    rs143094588    C    A    274.72    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.627;DB;DP=65;Dels=0.0;FS=2.604;HRun=0;HaplotypeScore=4.7011;MQ=46.68;MQ0=3;MQRankSum=-5.161;QD=4.23;ReadPosRankSum=0.542;SNPEFF_AMINO_ACID_CHANGE=K296N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167785665_167786848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397829    GT:AD:DP:GQ:PL    0/1:47,18:65:99:305,0,1450
6    167786961    rs151165498    G    T    76.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.76;MQ0=1;MQRankSum=-1.036;QD=6.93;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460930    GT:AD:DP:GQ:PL    0/1:6,5:11:99:106,0,193
6    167786963    .    C    T    85.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.79;MQ0=1;MQRankSum=-0.876;QD=8.53;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460930    GT:AD:DP:GQ:PL    0/1:5,5:10:99:115,0,122
6    167789590    rs3010591    C    T    273.43    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.604;DB;DP=62;Dels=0.0;FS=2.672;HRun=0;HaplotypeScore=0.0;MQ=44.83;MQ0=5;MQRankSum=-6.146;QD=4.41;ReadPosRankSum=0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476779    GT:AD:DP:GQ:PL    0/1:36,26:62:99:303,0,1075
6    167789615    rs58620632    C    T    951.56    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=1.938;DB;DP=49;Dels=0.0;FS=3.634;HRun=0;HaplotypeScore=0.0;MQ=45.71;MQ0=3;MQRankSum=5.068;QD=19.42;ReadPosRankSum=1.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476779    GT:AD:DP:GQ:PL    0/1:19,30:49:99:982,0,203
6    167796415    rs9457321    A    C    158.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=45.38;MQ0=0;QD=22.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460930    GT:AD:DP:GQ:PL    1/1:0,6:7:15.04:191,15,0
6    167797844    rs75736096    C    T    262.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.5;MQ0=1;QD=26.25;SNPEFF_AMINO_ACID_CHANGE=G26E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_167797654_167797920;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000460930    GT:AD:DP:GQ:PL    1/1:0,10:10:27.05:296,27,0
6    168069722    rs147916535    C    A    204.85    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=12.8;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,7:16:99:235,0,267
6    168069834    rs75366531    A    G    585.46    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.337;DB;DP=42;Dels=0.0;FS=1.204;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.592;QD=13.94;ReadPosRankSum=-0.541;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,20:42:99:615,0,699
6    168070084    rs113806172    G    A    122.48    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=17.5;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,5:7:58.28:152,0,58
6    168070293    rs112576008    G    A    93.44    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=11.68;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,5:8:99:123,0,104
6    168084692    rs113243510    GA    G    91.86    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=21;FS=10.843;HRun=13;HaplotypeScore=79.7277;IndelType=D;MQ=59.42;MQ0=0;MQRankSum=0.914;QD=4.37;ReadPosRankSum=1.299;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-351J23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400831    GT:AD:DP:GQ:PL    0/1:11,8:21:99:131,0,182
6    168265102    rs2301530    A    G    3281.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    1/1:0,94:95:99:3281,253,0
6    168265785    rs10660177    A    AATATT    411.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=17.2291;IndelType=I;MQ=52.5;MQ0=0;QD=82.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:453,15,0
6    168270868    rs2105969    A    G    116.91    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.38;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:147,0,26
6    168272817    rs2073651    T    C    233.38    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=11.11;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:13,8:21:99:263,0,478
6    168275771    rs2301531    T    G    78.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
6    168280925    rs2301532    A    G    743.35    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.503;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.449;QD=20.65;ReadPosRankSum=0.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400824    GT:AD:DP:GQ:PL    0/1:15,21:36:99:773,0,497
6    168297757    rs11459878    C    CT    193.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=22.7174;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=0.248;QD=21.47;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:3,6:9:84.22:232,0,84
6    168298875    rs9346511    C    T    429.89    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.417;DB;DP=30;Dels=0.0;FS=1.576;HRun=2;HaplotypeScore=0.9947;MQ=59.38;MQ0=0;MQRankSum=-0.329;QD=14.33;ReadPosRankSum=0.724;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:14,16:30:99:460,0,367
6    168315744    rs3213589    G    A    217.70    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.937;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=9.47;ReadPosRankSum=0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:15,8:23:99:248,0,466
6    168316118    rs3213591    T    G    309.18    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.795;DB;DP=30;Dels=0.0;FS=3.646;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.13;QD=10.31;ReadPosRankSum=-1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:17,13:30:99:339,0,477
6    168317994    rs9364207    C    T    179.45    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.317;QD=8.97;ReadPosRankSum=-0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:13,7:20:99:209,0,427
6    168319356    rs2273134    G    C    105.84    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=9.62;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:6,5:11:99:136,0,201
6    168323664    rs2301533    A    G    276    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.562;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=0.292;QD=8.9;ReadPosRankSum=0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:19,12:31:99:306,0,626
6    168323754    rs639777    G    A    203.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:237,21,0
6    168343838    rs1132306    T    C    97.43    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=6.09;ReadPosRankSum=-2.752;SNPEFF_AMINO_ACID_CHANGE=Y1020;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168343809_168343871;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392112    GT:AD:DP:GQ:PL    0/1:9,7:16:99:127,0,289
6    168344880    rs9346632    T    C    92.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=9.29;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,178
6    168347259    rs67454502    A    AT    196.29    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=19.2995;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=24.54;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:2,6:8:50.35:235,0,50
6    168348401    rs9364210    T    A    30.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=5.09;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:3,3:6:60.51:61,0,101
6    168348504    rs80333324    CT    C    406.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.974;DB;DP=46;FS=9.102;HRun=10;HaplotypeScore=119.1065;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=0.541;QD=8.85;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341575    GT:AD:DP:GQ:PL    0/1:23,23:46:99:446,0,538
6    168349011    rs9364371    C    T    551.86    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.218;DB;DP=50;Dels=0.0;FS=2.386;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.889;QD=11.04;ReadPosRankSum=-0.127;SNPEFF_AMINO_ACID_CHANGE=I1204;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168348973_168349158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392112    GT:AD:DP:GQ:PL    0/1:28,22:50:99:582,0,790
6    168351718    rs4708613    A    G    34.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.52;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507679    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:64,0,30
6    168369610    rs2295089    A    G    94.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.94;MQ0=0;MQRankSum=-2.017;QD=11.82;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392108    GT:AD:DP:GQ:PL    0/1:4,4:8:99:125,0,140
6    168440639    rs2073631    C    T    531.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504593    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:565,42,0
6    168443588    rs6912966    T    C    138.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351261    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:171,15,0
6    168457801    rs3734898    A    G    123.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.66;SNPEFF_AMINO_ACID_CHANGE=A313;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168457497_168458019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537786    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
6    168457966    rs3734899    G    A    30.73    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=3.84;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=D258;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168457497_168458019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537786    GT:AD:DP:GQ:PL    0/1:5,3:8:60.72:61,0,157
6    168458074    rs3734900    G    A    52.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=7.49;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283309    GT:AD:DP:GQ:PL    0/1:4,3:7:76.88:82,0,77
6    168459790    rs1465182    G    T    51.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506415    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
6    168459792    rs2269680    G    A    49.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506415    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
6    168462765    rs3823460    C    T    35.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506415    GT:AD:DP:GQ:PL    0/1:2,3:5:60.47:66,0,60
6    168464402    rs73028318    C    T    426.94    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=25;Dels=0.0;FS=1.58;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=17.08;ReadPosRankSum=-0.52;SNPEFF_AMINO_ACID_CHANGE=R160Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168464281_168464436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440994    GT:AD:DP:GQ:PL    0/1:11,14:25:99:457,0,328
6    168466504    rs9295041    A    G    345.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=26.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283309    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:379,33,0
6    168467624    rs73028331    G    A    133.31    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=14.81;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283309    GT:AD:DP:GQ:PL    0/1:4,5:9:99:163,0,132
6    168468186    rs6906979    G    T    1078.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283309    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1112,84,0
6    168475764    rs9364396    G    T    131.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283309    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
6    168475822    rs3816859    A    G    413.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283309    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:446,36,0
6    168476198    rs2306943    A    G    31.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283309    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
6    168479604    rs34054991    G    A    1456.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=L57;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168479562_168479839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283309    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1489,111,0
6    168479790    rs11750985    C    T    476.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511714    GT:AD:DP:GQ:PL    1/1:0,18:18:45.09:510,45,0
6    168694594    rs7764061    C    T    1320.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_AMINO_ACID_CHANGE=G275R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168693512_168694621;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366796    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1353,102,0
6    168695309    rs4708710    C    T    232.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=25.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366796    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:265,21,0
6    168695345    rs4708711    G    A    442.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.59;SNPEFF_AMINO_ACID_CHANGE=P233L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168695313_168695384;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366796    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:475,36,0
6    168708751    rs10945499    A    G    42.95    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=4.3;ReadPosRankSum=-1.214;SNPEFF_AMINO_ACID_CHANGE=S562;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168707584_168709778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366795    GT:AD:DP:GQ:PL    0/1:7,3:10:72.95:73,0,247
6    168708816    rs10945501    T    G    172.95    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.803;QD=9.1;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=T541P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168707584_168709778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366795    GT:AD:DP:GQ:PL    0/1:12,7:19:99:203,0,410
6    168709385    rs6925614    T    C    212.16    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=0.764;DB;DP=37;Dels=0.0;FS=1.602;HRun=3;HaplotypeScore=0.734;MQ=59.38;MQ0=0;MQRankSum=-0.053;QD=5.73;ReadPosRankSum=-1.155;SNPEFF_AMINO_ACID_CHANGE=E351G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_168707584_168709778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366795    GT:AD:DP:GQ:PL    0/1:26,11:37:99:242,0,787
6    168948055    rs9346721    G    A    72.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.92;MQ0=0;QD=24.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354536    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
6    169008945    rs3734421    C    T    65.28    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.635;QD=5.44;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354536    GT:AD:DP:GQ:PL    0/1:7,5:12:95.27:95,0,181
6    169621600    rs140852957    G    A    773.89    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.638;DB;DP=59;Dels=0.0;FS=1.063;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.218;QD=12.9;ReadPosRankSum=1.089;SNPEFF_AMINO_ACID_CHANGE=P1099L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_169621525_169621622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366787    GT:AD:DP:GQ:PL    0/1:29,30:59:99:804,0,909
6    169625173    .    A    C    661.19    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.122;DP=39;Dels=0.0;FS=1.342;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=0.996;QD=16.95;ReadPosRankSum=-0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366787    GT:AD:DP:GQ:PL    0/1:15,24:39:99:691,0,411
6    169629783    rs6422747    G    A    371.29    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=38;Dels=0.0;FS=3.482;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.499;QD=9.77;ReadPosRankSum=0.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461848    GT:AD:DP:GQ:PL    0/1:24,14:38:99:401,0,753
6    169629910    rs6422748    G    C    77.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.51;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461848    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:108,0,70
6    169632305    rs145532758    AG    A    624.28    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=4.609;DB;DP=40;FS=3.089;HRun=3;HaplotypeScore=92.4889;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=0.059;QD=15.61;ReadPosRankSum=-1.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461848    GT:AD:DP:GQ:PL    0/1:19,21:40:99:663,0,621
6    169637456    rs9283850    G    A    235.63    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.449;DB;DP=19;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.939;QD=12.4;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366787    GT:AD:DP:GQ:PL    0/1:10,9:19:99:266,0,310
6    169637469    rs73043889    G    T    247.34    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=14.55;ReadPosRankSum=-0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366787    GT:AD:DP:GQ:PL    0/1:8,9:17:99:277,0,250
6    169637519    rs9283851    C    T    62.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.99;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366787    GT:AD:DP:GQ:PL    0/1:4,3:7:92.95:93,0,127
6    169637911    rs9766678    G    A    444.38    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.139;QD=23.39;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366787    GT:AD:DP:GQ:PL    0/1:5,14:19:99:474,0,117
6    169641971    rs61730651    C    T    614.13    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=2.441;DB;DP=39;Dels=0.0;FS=3.297;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.629;QD=15.75;ReadPosRankSum=0.424;SNPEFF_AMINO_ACID_CHANGE=S259;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_169641857_169642053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366787    GT:AD:DP:GQ:PL    0/1:19,20:39:99:644,0,496
6    169646199    rs73046008    A    C    248.13    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=19.09;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435791    GT:AD:DP:GQ:PL    0/1:5,8:13:99:278,0,165
6    169646409    rs73046010    A    G    413.41    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.889;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=13.34;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435791    GT:AD:DP:GQ:PL    0/1:15,16:31:99:443,0,492
6    169648360    rs73046025    G    A    149.75    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=16.64;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435791    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,118
6    169648376    rs12181068    A    G    40.47    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=56.35;MQ0=0;MQRankSum=0.0;QD=3.11;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435791    GT:AD:DP:GQ:PL    0/1:8,5:13:70.46:70,0,280
6    169648380    rs115872154    C    G    137.06    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.298;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-1.099;QD=9.14;ReadPosRankSum=-0.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435791    GT:AD:DP:GQ:PL    0/1:8,7:15:99:167,0,290
6    169648767    rs12178180    G    A    285.93    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=27;Dels=0.0;FS=1.599;HRun=0;HaplotypeScore=0.9933;MQ=59.14;MQ0=0;MQRankSum=0.126;QD=10.59;ReadPosRankSum=0.577;SNPEFF_AMINO_ACID_CHANGE=N118;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_169648512_169649068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THBS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366787    GT:AD:DP:GQ:PL    0/1:17,10:27:99:316,0,498
6    170061098    rs80345733    C    T    40.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.22;MQ0=0;MQRankSum=-0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476322    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:71,0,25
6    170118085    rs7760142    C    T    79.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339209    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
6    170156683    rs9478102    T    C    138.27    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=11.52;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366772    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,247
6    170159023    rs6459660    G    A    556.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.52;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8824;MQ=58.87;MQ0=0;MQRankSum=0.224;QD=12.36;ReadPosRankSum=-1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366772    GT:AD:DP:GQ:PL    0/1:25,20:45:99:586,0,862
6    170162515    rs9478006    A    C    359.84    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.081;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.114;QD=10.0;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366772    GT:AD:DP:GQ:PL    0/1:22,14:36:99:390,0,692
6    170173277    rs9478007    G    A    112.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.75;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C6orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366771    GT:AD:DP:GQ:PL    0/1:2,4:6:63.49:142,0,63
6    170591923    rs1033583    T    G    2312.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366756    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2346,178,0
6    170593730    rs2747759    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366756    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
6    170594819    rs2255020    T    C    1994.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366756    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2027,150,0
6    170595430    rs2747757    G    C    3431    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.31;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366756    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3431,262,0
6    170597276    rs2738822    C    T    570.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366756    GT:AD:DP:GQ:PL    1/1:0,19:20:51.10:603,51,0
6    170627651    rs9460113    G    A    8038.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.309;DB;DP=247;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.9929;MQ=58.95;MQ0=0;MQRankSum=2.327;QD=32.55;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=T391;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_170626458_170628212;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000476287    GT:AD:DP:GQ:PL    1/1:2,245:247:99:8039,577,0
6    170845354    rs9348278    A    G    138.66    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=11.56;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392093    GT:AD:DP:GQ:PL    0/1:7,5:12:99:169,0,239
6    170858045    rs2076319    C    T    182.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.792;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=13.02;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262193    GT:AD:DP:GQ:PL    0/1:7,7:14:99:212,0,256
6    170862051    rs4710839    G    C    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262193    GT:AD:DP:GQ:PL    0/1:2,2:4:70.42:70,0,72
6    170862300    rs12717    G    C    473.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=13.17;ReadPosRankSum=-0.653;SNPEFF_AMINO_ACID_CHANGE=P11A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_170862218_170862429;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262193    GT:AD:DP:GQ:PL    0/1:16,20:36:99:504,0,419
6    170871013    .    A    ACAG    1816.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;DP=82;FS=0.0;HRun=0;HaplotypeScore=416.8711;IndelType=I;MQ=61.15;MQ0=0;MQRankSum=1.251;QD=22.15;ReadPosRankSum=-1.636;SNPEFF_AMINO_ACID_CHANGE=-44Q;SNPEFF_CODON_CHANGE=-/CAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_6_170870879_170871321;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540980    GT:AD:DP:GQ:PL    1/1:43,38:82:67.11:1858,67,0
6    170871052    rs112083427    G    A    52.15    HaplotypeScoreFilter13;QDFilter2    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=50;Dels=0.0;FS=10.194;HRun=1;HaplotypeScore=16.3095;MQ=59.86;MQ0=0;MQRankSum=-0.885;QD=1.04;ReadPosRankSum=-0.718;SNPEFF_AMINO_ACID_CHANGE=Q56;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_170870879_170871321;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540980    GT:AD:DP:GQ:PL    0/1:41,9:50:82.14:82,0,928
6    170878793    rs1042327    T    C    502.25    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.206;DB;DP=31;Dels=0.0;FS=3.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.771;QD=16.2;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=N234;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_6_170878700_170878867;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392091    GT:AD:DP:GQ:PL    0/1:15,16:31:99:532,0,433
6    170878886    rs2235506    A    G    142.18    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.592;QD=7.48;ReadPosRankSum=-1.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421512    GT:AD:DP:GQ:PL    0/1:10,9:19:99:172,0,362
6    170881130    rs2072916    T    C    116.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541970    GT:AD:DP:GQ:PL    0/1:3,4:7:99:147,0,105
6    170886531    rs8770    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392090    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
6    170886918    rs34311774    C    T    177.77    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=22.22;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443345    GT:AD:DP:GQ:PL    0/1:1,7:8:21.17:208,0,21
6    170892100    rs9295417    T    C    404.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.408;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.296;QD=11.57;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392090    GT:AD:DP:GQ:PL    0/1:21,14:35:99:435,0,636
6    170892483    rs17860837    A    AT    413.39    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=27;FS=4.222;HRun=4;HaplotypeScore=103.6469;IndelType=I;MQ=56.44;MQ0=0;MQRankSum=0.354;QD=15.31;ReadPosRankSum=-1.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392090    GT:AD:DP:GQ:PL    0/1:14,13:27:99:452,0,330
6    170892848    rs4140615    A    G    657.88    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=4.24;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.97;MQ0=0;MQRankSum=0.644;QD=15.3;ReadPosRankSum=1.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392090    GT:AD:DP:GQ:PL    0/1:22,21:43:99:688,0,603
6    170892919    rs113114915    T    TACTC    638.16    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.429;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=91.9548;IndelType=I;MQ=58.77;MQ0=0;MQRankSum=0.367;QD=31.91;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392090    GT:AD:DP:GQ:PL    0/1:11,8:20:99:677,0,524
6    170893364    rs4140616    C    T    134.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.881;QD=13.43;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392090    GT:AD:DP:GQ:PL    0/1:4,6:10:99:164,0,131
7    197267    rs4916935    G    A    173.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313766    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
7    197322    rs6945992    A    G    93.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=15.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313766    GT:AD:DP:GQ:PL    0/1:2,4:6:62.60:123,0,63
7    197535    rs6951112    T    C    96.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313766    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:129,12,0
7    540741    rs1800814    G    A    3899.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5456;MQ=59.39;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354513    GT:AD:DP:GQ:PL    1/1:0,112:113:99:3900,292,0
7    541032    rs28376477    C    G    1261.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354513    GT:AD:DP:GQ:PL    1/1:0,33:34:96.31:1295,96,0
7    550737    rs62433334    G    C    41.64    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=8.33;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354513    GT:AD:DP:GQ:PL    0/1:1,4:5:26.22:72,0,26
7    551946    rs9692018    T    C    276.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=25.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354513    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:309,24,0
7    552046    rs1129401    A    G    441.05    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.868;DB;DP=41;Dels=0.0;FS=6.934;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.177;QD=10.76;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=H69;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_551988_552092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354513    GT:AD:DP:GQ:PL    0/1:23,18:41:99:471,0,560
7    590199    rs11545042    A    G    59.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=6.66;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=T338;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_589387_590239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360274    GT:AD:DP:GQ:PL    0/1:6,3:9:89.94:90,0,185
7    618855    rs62431411    T    C    708.33    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.166;DB;DP=39;Dels=0.0;FS=2.92;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-1.407;QD=18.16;ReadPosRankSum=0.832;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430040    GT:AD:DP:GQ:PL    0/1:15,24:39:99:738,0,430
7    618869    rs62431412    G    A    745.17    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=0.063;DB;DP=43;Dels=0.0;FS=2.731;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.043;QD=17.33;ReadPosRankSum=0.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430040    GT:AD:DP:GQ:PL    0/1:16,27:43:99:775,0,477
7    618938    rs3211362    A    G    740.89    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.988;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.49;MQ0=0;MQRankSum=-0.471;QD=16.46;ReadPosRankSum=0.034;SNPEFF_AMINO_ACID_CHANGE=I282;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_618893_619014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360274    GT:AD:DP:GQ:PL    0/1:19,26:45:99:771,0,519
7    624221    rs9330368    T    G    167.78    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.831;DB;DP=19;Dels=0.0;FS=2.199;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.042;QD=8.83;ReadPosRankSum=0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340920    GT:AD:DP:GQ:PL    0/1:12,7:19:99:198,0,392
7    750790    rs6964358    G    T    36.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.25;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456696    GT:AD:DP:GQ:PL    0/1:4,3:7:66.75:67,0,119
7    751220    rs4074132    G    A    192.27    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=17.48;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360274    GT:AD:DP:GQ:PL    0/1:4,7:11:97.79:222,0,98
7    769184    rs62432206    A    G    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
7    780687    rs62432212    T    C    299.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:332,30,0
7    780859    rs6943174    T    G    32.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:64,6,0
7    780980    rs6943337    T    G    89.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    794471    rs34761279    A    G    425.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438961    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:459,33,0
7    794576    rs62432239    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438961    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    801211    rs4548086    C    T    87.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
7    803342    rs4495324    G    A    513.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,18:18:48.09:547,48,0
7    808588    rs6973614    C    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_808112_808842;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000403952    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    808749    rs62432865    C    T    541    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:574,48,0
7    808810    rs6946758    C    G    712.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=28.48;SNPEFF_AMINO_ACID_CHANGE=A9G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_808112_808842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403952    GT:AD:DP:GQ:PL    1/1:0,25:25:60.16:745,60,0
7    810219    rs4720951    T    C    859.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=V378A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_810108_810255;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537862    GT:AD:DP:GQ:PL    1/1:0,28:28:66.21:892,66,0
7    813618    rs4719279    T    C    2070.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491496    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2103,163,0
7    813650    rs62432869    G    A    2940.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5508;MQ=59.74;MQ0=0;QD=33.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491496    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2973,217,0
7    813867    rs6973746    C    G    570.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.327;QD=31.71;ReadPosRankSum=1.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491496    GT:AD:DP:GQ:PL    1/1:1,17:18:48.15:604,48,0
7    814612    rs34943122    G    A    1997.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8245;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491496    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2030,156,0
7    814788    rs3922641    G    A    1021.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.92;SNPEFF_AMINO_ACID_CHANGE=R168K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_814643_814799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403952    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1055,81,0
7    819477    rs35728023    T    C    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
7    821798    rs4374882    C    T    2491.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.63;MQ0=0;QD=26.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486546    GT:AD:DP:GQ:PL    1/1:1,93:95:99:2525,196,0
7    821869    rs6460945    G    A    547.76    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=122;Dels=0.0;FS=6.922;HRun=0;HaplotypeScore=1.664;MQ=54.28;MQ0=0;MQRankSum=1.044;QD=4.49;ReadPosRankSum=2.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486546    GT:AD:DP:GQ:PL    0/1:83,39:122:99:578,0,2091
7    821892    rs9648155    C    T    232.74    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.682;DB;DP=122;Dels=0.0;FS=13.544;HRun=0;HaplotypeScore=1.5317;MQ=55.39;MQ0=0;MQRankSum=0.513;QD=1.91;ReadPosRankSum=-1.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486546    GT:AD:DP:GQ:PL    0/1:98,23:122:99:263,0,2519
7    822050    rs62432895    C    G    2071.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=46.76;MQ0=3;QD=23.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486546    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2105,180,0
7    822080    rs111586729    T    C    336.88    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.132;DB;DP=92;Dels=0.0;FS=1.026;HRun=2;HaplotypeScore=5.0811;MQ=47.8;MQ0=2;MQRankSum=-1.737;QD=3.66;ReadPosRankSum=-0.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486546    GT:AD:DP:GQ:PL    0/1:65,27:92:99:367,0,1515
7    822083    rs9648157    T    C    330.75    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=89;Dels=0.0;FS=1.049;HRun=0;HaplotypeScore=4.0828;MQ=47.76;MQ0=1;MQRankSum=-1.883;QD=3.72;ReadPosRankSum=-1.251;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486546    GT:AD:DP:GQ:PL    0/1:61,28:89:99:361,0,1362
7    822523    rs4719314    A    G    3403.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=57.98;MQ0=0;QD=35.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486546    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3403,256,0
7    825114    rs67721251    T    C    3528.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297440    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3529,265,0
7    825429    rs62432897    A    G    167.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461576    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
7    881668    rs6461378    C    T    1008.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=H118Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_881583_881767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297445    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1042,78,0
7    881858    rs6415241    C    T    349.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421580    GT:AD:DP:GQ:PL    1/1:0,10:10:30.06:383,30,0
7    882250    rs34942204    G    A    414.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421580    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:447,33,0
7    882895    rs6970511    C    G    2548.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=38.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421580    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2581,190,0
7    888448    rs7781617    T    C    117.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403868    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:150,12,0
7    888883    rs7792542    G    A    42.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471349    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    889488    rs117913589    C    T    184.54    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=23;Dels=0.0;FS=4.2;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.606;QD=8.02;ReadPosRankSum=-0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471349    GT:AD:DP:GQ:PL    0/1:14,9:23:99:215,0,386
7    889858    rs34398649    C    T    72.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471349    GT:AD:DP:GQ:PL    1/1:0,4:4:9:105,9,0
7    890978    rs7792674    T    C    80.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=10.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340926    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:112,9,0
7    893297    rs4605959    G    C    324.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340926    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:357,27,0
7    894830    rs7785776    T    C    77.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340926    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
7    894841    rs7810182    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340926    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
7    899587    rs11769295    A    G    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297445    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
7    899710    rs12700166    A    C    524.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297445    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:557,42,0
7    905786    rs4721952    A    G    438.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297445    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:472,36,0
7    912755    rs4722034    C    T    1143.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297445    GT:AD:DP:GQ:PL    1/1:0,32:32:90.26:1177,90,0
7    925949    rs10226357    A    G    80.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.15;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
7    926077    rs10267796    G    A    214.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
7    926827    rs4722203    T    C    568.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=H44;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_926670_926894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GET4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426056    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:601,45,0
7    933234    rs35157448    T    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265846    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
7    940181    rs10256887    C    T    293.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.44;MQ0=0;QD=26.71;SNPEFF_AMINO_ACID_CHANGE=G106S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_940170_940253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453175    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:327,27,0
7    940724    rs11765973    G    A    294.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435943    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:328,24,0
7    943998    rs3824077    C    T    93.31    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=7.18;ReadPosRankSum=1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265846    GT:AD:DP:GQ:PL    0/1:9,4:13:99:123,0,271
7    944683    rs1881121    C    T    269.46    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=26;Dels=0.0;FS=2.12;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.208;QD=10.36;ReadPosRankSum=-0.104;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265846    GT:AD:DP:GQ:PL    0/1:15,11:26:99:299,0,516
7    974960    rs148726371    C    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265846    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    1008926    rs56227150    C    T    2137.25    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.007;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=0.367;QD=15.95;ReadPosRankSum=-0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466146    GT:AD:DP:GQ:PL    0/1:70,64:134:99:2167,0,2249
7    1009337    rs10264122    T    C    38.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.7;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466146    GT:AD:DP:GQ:PL    0/1:3,2:5:68.51:69,0,74
7    1024581    rs3824081    T    C    354.70    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=26;Dels=0.0;FS=6.862;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.527;QD=13.64;ReadPosRankSum=-0.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2W1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308919    GT:AD:DP:GQ:PL    0/1:11,15:26:99:385,0,255
7    1026074    rs9655345    A    G    70.54    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=14.11;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2W1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308919    GT:AD:DP:GQ:PL    0/1:1,4:5:27.97:101,0,28
7    1026898    rs113795030    T    C    35.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.83;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2W1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308919    GT:AD:DP:GQ:PL    0/1:2,2:4:65.32:65,0,67
7    1040081    rs112082645    C    T    94.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.72;QD=13.5;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357429    GT:AD:DP:GQ:PL    0/1:2,5:7:64.94:124,0,65
7    1097947    rs55677825    G    A    475.16    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=3.96;DB;DP=47;Dels=0.0;FS=3.186;HRun=0;HaplotypeScore=2.9466;MQ=60.0;MQ0=0;MQRankSum=-0.341;QD=10.11;ReadPosRankSum=-0.705;SNPEFF_AMINO_ACID_CHANGE=V184M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1097401_1098897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR146;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000500070    GT:AD:DP:GQ:PL    0/1:29,18:47:99:505,0,748
7    1098120    rs139871108    G    A    276.08    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.704;DB;DP=27;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.674;QD=10.23;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=P241;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1097401_1098897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR146;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000500070    GT:AD:DP:GQ:PL    0/1:14,13:27:99:306,0,460
7    1131356    rs3802141    T    C    2365.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=33.79;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_1131043_1133451;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297469    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2398,190,0
7    1131394    rs34497267    G    A    995.87    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.499;DB;DP=59;Dels=0.0;FS=7.504;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.176;QD=16.88;ReadPosRankSum=-0.207;SNPEFF_AMINO_ACID_CHANGE=V10;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1131043_1133451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297469    GT:AD:DP:GQ:PL    0/1:25,34:59:99:1026,0,746
7    1132075    rs11977449    T    C    236.96    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=52.45;MQ0=0;MQRankSum=1.106;QD=18.23;ReadPosRankSum=0.978;SNPEFF_AMINO_ACID_CHANGE=I237;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1131043_1133451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297469    GT:AD:DP:GQ:PL    0/1:5,8:13:82.74:267,0,83
7    1132153    rs3808352    G    A    435.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.701;DB;DP=30;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.166;QD=14.51;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=A263;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1131043_1133451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297469    GT:AD:DP:GQ:PL    0/1:15,15:30:99:465,0,423
7    1132671    rs4266553    C    G    142.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=6.154;HRun=1;HaplotypeScore=0.0;MQ=54.35;MQ0=0;MQRankSum=1.191;QD=11.88;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=T33R;SNPEFF_CODON_CHANGE=aCg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1132574_1132825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPER;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342452    GT:AD:DP:GQ:PL    0/1:6,6:12:99:173,0,153
7    1133171    rs3808354    G    T    240.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_AMINO_ACID_CHANGE=R122L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1133059_1133377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPER;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342452    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:274,21,0
7    1133305    rs1133043    C    G    830.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=L167V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1133059_1133377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPER;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342452    GT:AD:DP:GQ:PL    1/1:0,29:29:66.21:863,66,0
7    1147617    rs71538138    A    T    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.2;MQ0=1;QD=10.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357429    GT:AD:DP:GQ:PL    1/1:0,3:4:6.02:72,6,0
7    1192018    rs6959783    T    C    325.11    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.321;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.098;QD=9.03;ReadPosRankSum=-1.767;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316495    GT:AD:DP:GQ:PL    0/1:20,16:36:99:355,0,596
7    1192088    rs6970581    G    A    210.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=17.58;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316495    GT:AD:DP:GQ:PL    0/1:4,8:12:99:241,0,137
7    1192105    rs6970587    G    C    263.16    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.531;QD=23.92;ReadPosRankSum=0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316495    GT:AD:DP:GQ:PL    0/1:3,8:11:91.94:293,0,92
7    1192438    rs6975049    G    C    137.59    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.461;QD=11.47;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316495    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,178
7    1195264    rs7781581    T    C    591.85    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=39;Dels=0.0;FS=2.126;HRun=1;HaplotypeScore=1.8606;MQ=58.92;MQ0=0;MQRankSum=-0.107;QD=15.18;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478137    GT:AD:DP:GQ:PL    0/1:18,21:39:99:622,0,548
7    1197632    rs12056053    A    C    569.89    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.176;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9832;MQ=58.8;MQ0=0;MQRankSum=-0.281;QD=16.28;ReadPosRankSum=-1.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478137    GT:AD:DP:GQ:PL    0/1:16,19:35:99:600,0,544
7    1197994    rs12702435    T    C    278.18    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.78;MQ0=0;MQRankSum=-1.733;QD=14.64;ReadPosRankSum=-1.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478137    GT:AD:DP:GQ:PL    0/1:7,12:19:99:308,0,219
7    1273485    rs6966150    G    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNCX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
7    1474632    .    A    C    81.01    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DP=12;Dels=0.0;FS=3.522;HRun=10;HaplotypeScore=0.0;MQ=49.5;MQ0=0;MQRankSum=-1.668;QD=6.75;ReadPosRankSum=2.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MICALL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460198    GT:AD:DP:GQ:PL    0/1:5,7:12:99:111,0,163
7    1481919    rs4236408    C    A    2129.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_AMINO_ACID_CHANGE=A328;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1481828_1482120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MICALL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405088    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2163,160,0
7    1484572    rs10435184    A    G    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.59;SNPEFF_AMINO_ACID_CHANGE=G166;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1484288_1484986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MICALL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405088    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
7    1516232    .    G    A    684.36    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DP=46;Dels=0.0;FS=2.65;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.022;QD=14.88;ReadPosRankSum=1.316;SNPEFF_AMINO_ACID_CHANGE=Q1709*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_7_1516206_1516293;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000404767    GT:AD:DP:GQ:PL    0/1:19,27:46:99:714,0,547
7    1522175    rs10224038    A    G    623.04    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.587;DB;DP=45;Dels=0.0;FS=2.978;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=13.85;ReadPosRankSum=1.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389470    GT:AD:DP:GQ:PL    0/1:21,24:45:99:653,0,622
7    1528947    .    T    TCAGGCCCTGCTCCCAGC    1238.05    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DP=15;FS=0.0;HRun=0;HaplotypeScore=357.2945;IndelType=I;MQ=37.22;MQ0=0;MQRankSum=2.1;QD=82.54;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389470    GT:AD:DP:GQ:PL    0/1:3,8:15:99:1277,0,259
7    1538021    rs11761394    G    A    160.44    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.91;DB;DP=15;Dels=0.0;FS=2.447;HRun=1;HaplotypeScore=0.9958;MQ=58.45;MQ0=0;MQRankSum=1.678;QD=10.7;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493531    GT:AD:DP:GQ:PL    0/1:8,7:15:99:190,0,264
7    1580879    rs117730393    G    A    217.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=12.09;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406174    GT:AD:DP:GQ:PL    0/1:9,9:18:99:248,0,315
7    1580921    rs3735656    C    T    503.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406174    GT:AD:DP:GQ:PL    1/1:0,16:16:42.08:536,42,0
7    1585243    rs4725207    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343242    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    1585603    rs10280178    T    C    269.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343242    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:302,24,0
7    1586239    rs1124669    A    G    130.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343242    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
7    1586653    rs112463195    A    AGCC    697.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=112.6924;IndelType=I;MQ=53.95;MQ0=0;QD=43.58;SNPEFF_AMINO_ACID_CHANGE=G392GA;SNPEFF_CODON_CHANGE=ggc/ggGGCc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_7_1585796_1586817;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297477    GT:AD:DP:GQ:PL    1/1:5,11:16:36.12:739,36,0
7    1586662    rs3779607    T    C    66.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=4.43;SNPEFF_AMINO_ACID_CHANGE=S390G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1585796_1586817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297477    GT:AD:DP:GQ:PL    1/1:0,15:15:9.01:98,9,0
7    1586866    rs3824072    T    C    109.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343242    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:142,12,0
7    1587687    rs3814480    A    G    91.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319010    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
7    1588391    rs3814481    A    G    143.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=20.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414730    GT:AD:DP:GQ:PL    1/1:0,6:7:15.04:176,15,0
7    1588549    rs3814482    G    A    75.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414730    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
7    1589417    rs10237660    T    G    178.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414730    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:211,18,0
7    1590368    rs6463921    A    G    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297477    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
7    1590376    rs2304360    T    C    157.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297477    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:190,15,0
7    1590443    rs2304361    T    C    767.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297477    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:800,60,0
7    1595068    rs17852421    G    A    831.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_AMINO_ACID_CHANGE=A18V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1594902_1595120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM184A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297477    GT:AD:DP:GQ:PL    1/1:0,26:26:69.16:864,69,0
7    1608591    rs7788760    A    C    45.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252329    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:76,0,25
7    1733102    rs4720922    G    T    55.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.89;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=L144M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1732446_1733721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC074389.6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382528    GT:AD:DP:GQ:PL    0/1:4,3:7:85.23:85,0,148
7    1855531    rs7680    G    A    86.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.6;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450235    GT:AD:DP:GQ:PL    0/1:4,4:9:99:116,0,105
7    1878377    rs3889573    A    G    169.67    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=14;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=2.8397;MQ=37.62;MQ0=3;MQRankSum=0.825;QD=12.12;ReadPosRankSum=1.532;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_7_1878222_1878504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110781.3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000402221    GT:AD:DP:GQ:PL    0/1:6,8:14:99:200,0,134
7    1885600    rs58673065    A    G    369.05    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.728;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.458;QD=12.73;ReadPosRankSum=0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110781.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318959    GT:AD:DP:GQ:PL    0/1:14,15:29:99:399,0,346
7    1886174    rs10231456    A    G    31.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.49;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110781.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318959    GT:AD:DP:GQ:PL    0/1:5,2:7:61.39:61,0,183
7    1886805    rs11762803    A    G    194.38    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=11.43;ReadPosRankSum=0.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110781.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318959    GT:AD:DP:GQ:PL    0/1:10,7:17:99:224,0,325
7    1887037    rs73046334    T    C    226.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.053;DB;DP=16;Dels=0.0;FS=1.822;HRun=0;HaplotypeScore=1.933;MQ=58.55;MQ0=0;MQRankSum=0.788;QD=14.14;ReadPosRankSum=-0.368;SNPEFF_AMINO_ACID_CHANGE=C93;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1886884_1889567;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110781.3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318959    GT:AD:DP:GQ:PL    0/1:8,8:16:99:256,0,257
7    1976457    rs1801368    C    T    30.16    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=3.77;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=R109H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_1976323_1976533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442131    GT:AD:DP:GQ:PL    0/1:6,2:8:60.15:60,0,152
7    1976667    rs2280548    G    T    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:69,0,34
7    2041500    rs939940    G    C    251.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    1/1:0,11:11:24.06:285,24,0
7    2041638    rs1107591    G    A    962.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=5.317;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5684;MQ=58.09;MQ0=0;MQRankSum=0.967;QD=8.75;ReadPosRankSum=0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:63,45:110:99:992,0,1497
7    2041887    rs4721296    A    C    349.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:382,30,0
7    2054314    rs142140779    CG    C    46.01    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=19;FS=0.0;HRun=5;HaplotypeScore=66.5233;IndelType=D;MQ=60.57;MQ0=0;MQRankSum=-2.208;QD=2.42;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:14,5:19:85.04:85,0,460
7    2089728    rs112027282    G    C    723.96    MQFilter40    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=0.187;DB;DP=129;Dels=0.0;FS=13.744;HRun=1;HaplotypeScore=1.8305;MQ=37.54;MQ0=38;MQRankSum=2.305;QD=5.61;ReadPosRankSum=4.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:94,34:129:99:754,0,1033
7    2089773    rs55740147    G    A    452.36    MQFilter40    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.154;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.0174;MQ=29.74;MQ0=30;MQRankSum=3.887;QD=5.08;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:62,21:89:99:482,0,350
7    2089802    rs55846169    C    T    78.95    MQFilter40;QDFilter2    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=1.979;DB;DP=85;Dels=0.0;FS=1.813;HRun=0;HaplotypeScore=0.734;MQ=34.43;MQ0=24;MQRankSum=1.658;QD=0.93;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:73,12:85:99:109,0,933
7    2089818    rs56315739    G    A    355.79    MQFilter40    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2984;MQ=39.5;MQ0=13;MQRankSum=3.02;QD=5.01;ReadPosRankSum=-1.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:49,18:71:99:386,0,753
7    2090129    rs55669426    G    C    58.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=11.75;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:2,3:5:66.20:89,0,66
7    2257467    rs1639914    A    G    106.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=11.82;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429779    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,184
7    2257612    rs6951493    G    A    607.91    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=49;Dels=0.0;FS=4.201;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=12.41;ReadPosRankSum=0.946;SNPEFF_AMINO_ACID_CHANGE=H129;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2257597_2257678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402746    GT:AD:DP:GQ:PL    0/1:29,20:49:99:638,0,795
7    2260715    rs1639917    G    T    245.98    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.468;QD=16.4;ReadPosRankSum=-0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429779    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,147
7    2262429    rs144195184    C    G    184.22    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=15.35;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265854    GT:AD:DP:GQ:PL    0/1:5,7:12:80.32:214,0,80
7    2269552    rs1637728    G    T    336.71    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.642;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=10.52;ReadPosRankSum=0.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTSJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242257    GT:AD:DP:GQ:PL    0/1:17,15:32:99:367,0,510
7    2278933    rs191003152    G    A    510.56    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.628;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.812;QD=13.09;ReadPosRankSum=-0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTSJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242257    GT:AD:DP:GQ:PL    0/1:21,18:39:99:541,0,752
7    2279482    rs11984133    A    C    109.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.65;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTSJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242257    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,137
7    2279851    rs6962067    T    C    279.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTSJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242257    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:312,24,0
7    2290314    rs12699806    C    T    402.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=19.5;MQ0=0;QD=14.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471348    GT:AD:DP:GQ:PL    1/1:0,28:28:47.95:435,48,0
7    2290317    rs60298419    T    G    393.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5284;MQ=19.5;MQ0=0;QD=14.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471348    GT:AD:DP:GQ:PL    1/1:0,28:28:47.94:427,48,0
7    2290319    rs57759798    TC    T    581.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=327.7437;IndelType=D;MQ=19.06;MQ0=0;QD=21.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471348    GT:AD:DP:GQ:PL    1/1:1,26:16:48.16:624,48,0
7    2290328    rs10230814    C    T    587.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7752;MQ=33.4;MQ0=0;QD=16.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471348    GT:AD:DP:GQ:PL    1/1:0,36:36:62.98:620,63,0
7    2290336    rs10249180    T    G    341.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9085;MQ=37.9;MQ0=0;QD=8.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471348    GT:AD:DP:GQ:PL    1/1:1,22:41:36.04:374,36,0
7    2290372    rs10230822    C    T    1771.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.91;MQ0=0;QD=28.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471348    GT:AD:DP:GQ:PL    1/1:0,60:61:99:1805,156,0
7    2290433    rs10230928    C    T    1949.82    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=174;Dels=0.0;FS=0.7;HRun=1;HaplotypeScore=6.8828;MQ=55.54;MQ0=0;MQRankSum=-1.015;QD=11.21;ReadPosRankSum=-1.388;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471348    GT:AD:DP:GQ:PL    0/1:95,77:174:99:1980,0,2629
7    2296493    rs2302070    A    G    274.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479689    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
7    2297006    rs6888    A    G    299.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.2;SNPEFF_AMINO_ACID_CHANGE=I376;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2297000_2297149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:332,27,0
7    2303986    rs2286206    T    C    961.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=A243;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2303933_2304093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:995,78,0
7    2304191    rs2286205    A    C    202.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
7    2309355    rs6947645    G    A    369.30    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.39;MQ0=0;MQRankSum=0.789;QD=14.77;ReadPosRankSum=1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    0/1:13,12:25:99:399,0,416
7    2314627    rs11351047    TC    T    196.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=5;HaplotypeScore=19.9169;IndelType=D;MQ=61.53;MQ0=0;QD=28.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419693    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:238,21,0
7    2314652    rs878534    G    A    99.16    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;MQRankSum=0.597;QD=9.01;ReadPosRankSum=-1.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419693    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,163
7    2315008    rs2398667    G    C    439.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419693    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:473,36,0
7    2318253    rs71550338    GACTC    G    1285    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=6.349;DB;DP=97;FS=7.706;HRun=0;HaplotypeScore=737.6912;IndelType=D;MQ=50.68;MQ0=0;MQRankSum=-0.329;QD=12.6;ReadPosRankSum=1.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    0/1:70,32:97:99:1324,0,4152
7    2318268    rs62442526    C    T    859.60    PASS    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=3.346;DB;DP=107;Dels=0.0;FS=8.684;HRun=0;HaplotypeScore=1.6483;MQ=51.09;MQ0=0;MQRankSum=0.079;QD=8.03;ReadPosRankSum=1.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    0/1:67,40:107:99:890,0,1710
7    2318280    rs6964897    C    T    1728.88    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.5;DB;DP=115;Dels=0.0;FS=6.511;HRun=0;HaplotypeScore=3.328;MQ=48.47;MQ0=1;MQRankSum=-0.009;QD=15.03;ReadPosRankSum=1.451;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    0/1:48,67:115:99:1759,0,1040
7    2318357    rs71525367    C    T    840.25    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.306;DB;DP=139;Dels=0.0;FS=8.239;HRun=1;HaplotypeScore=5.8164;MQ=30.03;MQ0=13;MQRankSum=1.811;QD=6.04;ReadPosRankSum=1.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    0/1:78,60:139:99:870,0,788
7    2318373    rs71525368    C    G    802.94    MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.108;DB;DP=127;Dels=0.0;FS=7.101;HRun=0;HaplotypeScore=2.2566;MQ=25.32;MQ0=13;MQRankSum=3.046;QD=6.32;ReadPosRankSum=-0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    0/1:69,57:127:99:833,0,547
7    2318964    .    T    C    668.75    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.771;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.101;MQ=46.21;MQ0=8;MQRankSum=-2.977;QD=6.76;ReadPosRankSum=0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222990    GT:AD:DP:GQ:PL    0/1:53,46:99:99:699,0,1534
7    2394991    rs11551167    C    T    255.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_AMINO_ACID_CHANGE=N106;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2394869_2395055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413917    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
7    2485933    rs2906176    T    C    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC004840.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313156    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
7    2517323    rs75840254    G    T    102.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.729;QD=10.28;ReadPosRankSum=0.876;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=GRIFIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417742    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,139
7    2553030    rs73049130    T    C    567.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.53;MQ0=0;MQRankSum=0.0;QD=29.85;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LFNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402506    GT:AD:DP:GQ:PL    1/1:2,17:19:12.59:600,13,0
7    2565268    rs893239    C    A    246.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LFNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222725    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
7    2566433    rs13225716    G    A    93.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=9.33;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LFNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222725    GT:AD:DP:GQ:PL    0/1:5,5:10:99:123,0,116
7    2577691    rs1043294    C    G    317.46    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.116;QD=13.23;ReadPosRankSum=0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421712    GT:AD:DP:GQ:PL    0/1:13,11:24:99:347,0,419
7    2577781    rs1043291    T    C    307.04    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=20;Dels=0.0;FS=4.964;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=15.35;ReadPosRankSum=0.608;SNPEFF_AMINO_ACID_CHANGE=E796;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2577511_2578398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    0/1:9,11:20:99:337,0,317
7    2578434    rs4721763    G    T    187.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=23.4;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421712    GT:AD:DP:GQ:PL    0/1:2,6:8:52.41:217,0,52
7    2578455    rs4721764    G    A    146.80    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=18.35;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421712    GT:AD:DP:GQ:PL    0/1:2,6:8:63.34:177,0,63
7    2580914    rs62442586    C    T    187.90    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.555;QD=14.45;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421712    GT:AD:DP:GQ:PL    0/1:6,7:13:99:218,0,167
7    2581594    rs34947605    G    A    76.58    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.0;QD=7.66;ReadPosRankSum=-2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421712    GT:AD:DP:GQ:PL    0/1:6,4:10:99:107,0,177
7    2582153    .    C    CCCCGGGTGT    575.02    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=121.878;IndelType=I;MQ=50.98;MQ0=0;QD=71.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    1/1:3,1:8:21.07:617,21,0
7    2582233    rs3735106    A    G    245.70    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.608;DB;DP=20;Dels=0.0;FS=7.225;HRun=0;HaplotypeScore=0.0;MQ=60.75;MQ0=0;MQRankSum=1.747;QD=12.28;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    0/1:11,9:20:99:276,0,356
7    2582381    rs61673178    T    A    292.58    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=30;Dels=0.0;FS=12.499;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.628;QD=9.75;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    0/1:17,13:30:99:323,0,563
7    2582584    rs34108550    G    A    121.82    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.329;DB;DP=16;Dels=0.0;FS=1.987;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.847;QD=7.61;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    0/1:9,7:16:99:152,0,322
7    2583165    rs13240450    G    A    460.13    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=1.603;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.32;MQ0=0;MQRankSum=-0.829;QD=13.53;ReadPosRankSum=-0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    0/1:13,21:34:99:490,0,379
7    2583328    rs61753095    C    T    433.32    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=3.516;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.879;QD=14.44;ReadPosRankSum=0.586;SNPEFF_AMINO_ACID_CHANGE=T233;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2583224_2583596;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    0/1:13,17:30:99:463,0,355
7    2587122    rs2164688    T    C    177.45    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.267;DB;DP=22;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=0.5784;MQ=59.15;MQ0=0;MQRankSum=1.195;QD=8.07;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    0/1:13,8:22:99:207,0,460
7    2594338    rs11773376    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340611    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    2611878    rs2917751    T    C    761.68    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.668;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7648;MQ=60.0;MQ0=0;MQRankSum=0.581;QD=15.87;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=T104;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2611826_2611960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402050    GT:AD:DP:GQ:PL    0/1:18,30:48:99:792,0,509
7    2612294    rs73674677    T    A    293.38    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=2.162;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=8.63;ReadPosRankSum=-0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325979    GT:AD:DP:GQ:PL    0/1:21,13:34:99:323,0,484
7    2612295    rs2969043    C    A    288.54    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.175;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.292;QD=9.02;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325979    GT:AD:DP:GQ:PL    0/1:20,12:32:99:319,0,491
7    2613042    rs2304540    G    C    175.28    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=17;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.054;QD=10.31;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325979    GT:AD:DP:GQ:PL    0/1:10,7:17:99:205,0,372
7    2625838    rs2257285    C    T    417.33    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.304;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=58.38;MQ0=0;MQRankSum=0.361;QD=16.05;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497572    GT:AD:DP:GQ:PL    0/1:10,16:26:99:447,0,246
7    2625906    .    TTGTCCCGGAG    T    639.67    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.983;DP=30;FS=1.599;HRun=0;HaplotypeScore=283.7957;IndelType=D;MQ=52.37;MQ0=0;MQRankSum=-2.184;QD=21.32;ReadPosRankSum=-1.431;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_2625842_2626005;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000325979    GT:AD:DP:GQ:PL    0/1:20,10:30:99:679,0,2476
7    2626038    rs3217437    CCAGGGAATGG    C    415.13    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=221.2801;IndelType=D;MQ=49.17;MQ0=0;MQRankSum=-2.298;QD=19.77;ReadPosRankSum=0.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497572    GT:AD:DP:GQ:PL    0/1:16,5:21:99:454,0,771
7    2626054    rs62439480    A    C    295.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.156;DB;DP=18;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=1.156;QD=16.43;ReadPosRankSum=-1.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497572    GT:AD:DP:GQ:PL    0/1:6,12:18:10.55:326,0,11
7    2627310    rs2917733    T    A    211.72    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=13.23;ReadPosRankSum=0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497572    GT:AD:DP:GQ:PL    0/1:9,7:16:99:242,0,320
7    2632477    rs2917730    A    G    98.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.977;QD=8.24;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427817    GT:AD:DP:GQ:PL    0/1:7,5:12:99:129,0,239
7    2689472    rs3801077    A    C    369.14    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.469;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.467;QD=16.78;ReadPosRankSum=-0.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400376    GT:AD:DP:GQ:PL    0/1:9,13:22:99:399,0,246
7    2691201    rs798479    C    A    236.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.258;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=14.76;ReadPosRankSum=0.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400376    GT:AD:DP:GQ:PL    0/1:8,8:16:99:266,0,215
7    2696655    rs12670817    G    A    187.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=17.08;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258796    GT:AD:DP:GQ:PL    0/1:5,6:11:99:218,0,142
7    2696940    rs6461508    C    T    768.73    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=6.012;DB;DP=55;Dels=0.0;FS=7.17;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=0.54;QD=13.98;ReadPosRankSum=-1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258796    GT:AD:DP:GQ:PL    0/1:29,26:55:99:799,0,721
7    2699687    rs76260255    C    CG    346.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=25.9258;IndelType=I;MQ=60.0;MQ0=0;QD=38.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498454    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:389,27,0
7    2740015    rs798473    T    G    229.27    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=22.93;ReadPosRankSum=-0.898;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480560    GT:AD:DP:GQ:PL    0/1:2,8:10:48.37:259,0,48
7    2749149    rs4721976    T    C    131.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=14.56;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480560    GT:AD:DP:GQ:PL    0/1:4,5:9:99:161,0,126
7    2758145    rs73047355    G    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312371    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
7    2763736    rs798541    T    G    30.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.73;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275364    GT:AD:DP:GQ:PL    0/1:2,2:4:60.89:61,0,67
7    2764130    rs798540    G    A    247.07    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=15.44;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275364    GT:AD:DP:GQ:PL    0/1:7,9:16:99:277,0,240
7    2773035    rs34004158    C    CAT    725.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=30.6565;IndelType=I;MQ=57.23;MQ0=0;QD=55.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275364    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:767,39,0
7    2802173    rs17132665    T    C    181.28    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=15.11;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275364    GT:AD:DP:GQ:PL    0/1:5,7:12:99:211,0,148
7    2834413    rs2527686    G    A    176.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447791    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
7    2834869    rs2533886    C    T    544.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275364    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:577,42,0
7    2854010    rs2644275    G    A    2535.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.466;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.76;MQ0=0;MQRankSum=-1.732;QD=32.51;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=T23I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2853946_2854023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407904    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2569,156,0
7    2854380    rs2644274    A    T    82.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275364    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
7    2946461    rs1124581    T    C    745.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=R1092;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2945775_2946476;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396946    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:778,60,0
7    2951650    rs2040925    C    G    151.93    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=25.32;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396946    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:182,0,21
7    2954801    rs1182157    T    C    777.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355508    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:810,63,0
7    2957005    rs3735124    T    C    318.86    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.642;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.189;QD=18.76;ReadPosRankSum=-0.057;SNPEFF_AMINO_ACID_CHANGE=P874;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_2956924_2957019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396946    GT:AD:DP:GQ:PL    0/1:4,13:17:89.65:349,0,90
7    2962241    rs3735130    G    A    293.39    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.554;DB;DP=30;Dels=0.0;FS=1.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.351;QD=9.78;ReadPosRankSum=0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355508    GT:AD:DP:GQ:PL    0/1:17,13:30:99:323,0,470
7    2962753    rs2527509    G    A    331.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.436;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.923;QD=12.73;ReadPosRankSum=-0.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355508    GT:AD:DP:GQ:PL    0/1:13,13:26:99:361,0,348
7    2966445    rs1182136    T    G    158.29    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=19;Dels=0.0;FS=2.077;HRun=5;HaplotypeScore=0.8941;MQ=53.61;MQ0=0;MQRankSum=2.177;QD=8.33;ReadPosRankSum=1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355508    GT:AD:DP:GQ:PL    0/1:10,9:19:99:188,0,193
7    2968361    rs2527506    G    A    263    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.74;QD=20.23;ReadPosRankSum=-1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355508    GT:AD:DP:GQ:PL    0/1:4,9:13:90.35:293,0,90
7    2977732    rs17257454    T    C    681.48    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=56;Dels=0.0;FS=5.012;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.125;QD=12.17;ReadPosRankSum=0.616;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396946    GT:AD:DP:GQ:PL    0/1:30,26:56:99:711,0,895
7    2985361    rs3839716    GAC    G    2161.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DB;DP=86;FS=0.0;HRun=0;HaplotypeScore=399.9954;IndelType=D;MQ=59.09;MQ0=0;MQRankSum=-0.281;QD=24.84;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356408    GT:AD:DP:GQ:PL    1/1:14,65:86:99:2204,173,0
7    3179968    rs7779230    T    G    335.83    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.136;DB;DP=36;Dels=0.0;FS=1.33;HRun=0;HaplotypeScore=1.581;MQ=58.71;MQ0=0;MQRankSum=-0.679;QD=9.33;ReadPosRankSum=-0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091801.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402115    GT:AD:DP:GQ:PL    0/1:19,17:36:99:366,0,617
7    3179973    rs7791857    G    C    346.57    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.584;DB;DP=37;Dels=0.0;FS=1.399;HRun=1;HaplotypeScore=0.6651;MQ=58.74;MQ0=0;MQRankSum=1.236;QD=9.37;ReadPosRankSum=-1.616;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091801.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402115    GT:AD:DP:GQ:PL    0/1:19,18:37:99:377,0,558
7    3179991    rs7779245    T    C    394.84    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.598;DB;DP=30;Dels=0.0;FS=1.664;HRun=1;HaplotypeScore=1.7206;MQ=59.23;MQ0=0;MQRankSum=0.395;QD=13.16;ReadPosRankSum=-1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091801.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402115    GT:AD:DP:GQ:PL    0/1:16,14:30:99:425,0,459
7    3180657    rs6964682    C    T    162.87    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=16;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=0.318;QD=10.18;ReadPosRankSum=0.635;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_3180554_3180834;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091801.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457522    GT:AD:DP:GQ:PL    0/1:9,7:16:99:193,0,297
7    3186818    rs118073034    G    A    214.43    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.381;DB;DP=22;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=9.75;ReadPosRankSum=-1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091801.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402115    GT:AD:DP:GQ:PL    0/1:13,9:22:99:244,0,325
7    3197867    rs4634530    T    C    386.24    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.485;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.161;QD=16.79;ReadPosRankSum=0.484;SNPEFF_AMINO_ACID_CHANGE=P29;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_3197771_3197888;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091801.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404626    GT:AD:DP:GQ:PL    0/1:8,15:23:99:416,0,263
7    4015505    rs73038434    G    A    46.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.734;MQ=41.19;MQ0=0;MQRankSum=1.599;QD=3.91;ReadPosRankSum=-0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484011    GT:AD:DP:GQ:PL    0/1:8,4:12:76.92:77,0,278
7    4015539    rs11975098    T    C    277.47    MQFilter40    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.48;MQ0=0;MQRankSum=-0.439;QD=16.32;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484011    GT:AD:DP:GQ:PL    0/1:7,10:17:99:307,0,175
7    4015564    rs56976781    A    G    137.80    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=35.08;MQ0=2;MQRankSum=1.027;QD=8.61;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484011    GT:AD:DP:GQ:PL    0/1:9,7:16:99:168,0,135
7    4016794    .    T    C    110.62    MQFilter40    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DP=39;Dels=0.0;FS=3.522;HRun=2;HaplotypeScore=0.0;MQ=15.93;MQ0=25;MQRankSum=-0.555;QD=2.84;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484011    GT:AD:DP:GQ:PL    0/1:29,7:39:92.74:141,0,93
7    4016825    .    TGAGGCTGC    T    304.11    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=70.3659;IndelType=D;MQ=16.16;MQ0=12;QD=16.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484011    GT:AD:DP:GQ:PL    1/1:12,7:6:15.05:346,15,0
7    4016963    rs12701331    T    C    429.13    PASS    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=25;Dels=0.0;FS=9.304;HRun=2;HaplotypeScore=0.0;MQ=48.45;MQ0=0;MQRankSum=-0.96;QD=17.17;ReadPosRankSum=1.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484011    GT:AD:DP:GQ:PL    0/1:5,19:25:38.05:459,0,38
7    4016981    .    A    G    394.04    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DP=25;Dels=0.0;FS=1.871;HRun=3;HaplotypeScore=0.7887;MQ=48.94;MQ0=0;MQRankSum=-2.433;QD=15.76;ReadPosRankSum=1.506;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484011    GT:AD:DP:GQ:PL    0/1:12,13:25:99:424,0,295
7    4026944    rs7785899    C    G    1261.68    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.416;DB;DP=91;Dels=0.0;FS=2.95;HRun=0;HaplotypeScore=2.3999;MQ=60.0;MQ0=0;MQRankSum=2.53;QD=13.86;ReadPosRankSum=2.135;SNPEFF_AMINO_ACID_CHANGE=L707;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4026818_4026954;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:47,44:91:99:1292,0,1239
7    4107593    rs117385522    A    C    126.31    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=15.79;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:3,5:8:99:156,0,103
7    4116507    rs13223359    C    G    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,70
7    4116665    rs11978101    G    A    76.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-1.344;QD=5.49;ReadPosRankSum=-0.636;SNPEFF_AMINO_ACID_CHANGE=D1016N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4116630_4116821;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:10,4:14:99:107,0,251
7    4118978    rs138579749    C    CT    653.14    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.311;DB;DP=48;FS=0.0;HRun=6;HaplotypeScore=107.3815;IndelType=I;MQ=59.75;MQ0=0;MQRankSum=-0.517;QD=13.61;ReadPosRankSum=2.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:26,22:48:99:692,0,594
7    4119285    rs1880860    A    G    362.23    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.283;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.591;QD=15.75;ReadPosRankSum=0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:11,12:23:99:392,0,275
7    4166769    rs597831    T    A    69.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=9.87;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,102
7    4166959    rs77297762    G    A    1668.27    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.201;DB;DP=114;Dels=0.0;FS=0.917;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.526;QD=14.63;ReadPosRankSum=0.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:60,53:114:99:1698,0,1981
7    4167336    rs651245    T    C    58.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.734;MQ=57.87;MQ0=0;MQRankSum=0.387;QD=5.36;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:6,5:11:88.92:89,0,202
7    4172006    rs13224870    C    T    262.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=21.86;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=S1393;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4171957_4172055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:4,8:12:77.13:292,0,77
7    4172109    rs13224986    C    T    66.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.59;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:96,0,29
7    4185592    rs608271    A    G    183.76    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=14;Dels=0.0;FS=9.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=13.13;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:5,9:14:99:214,0,171
7    4189075    rs659182    G    C    134.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.43;ReadPosRankSum=-0.336;SNPEFF_AMINO_ACID_CHANGE=A1535;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4188894_4189095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:5,5:10:99:164,0,171
7    4189123    rs4720177    G    A    102.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.87;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,101
7    4247821    .    A    C    64.67    QDFilter2    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.861;DP=57;Dels=0.0;FS=49.15;HRun=2;HaplotypeScore=4.9247;MQ=56.73;MQ0=0;MQRankSum=-0.015;QD=1.13;ReadPosRankSum=1.356;SNPEFF_AMINO_ACID_CHANGE=T1749P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4247731_4247917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:22,35:57:94.66:95,0,662
7    4259708    rs11978573    C    T    259.56    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.787;QD=11.29;ReadPosRankSum=0.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:14,9:23:99:290,0,441
7    4259953    rs13224192    G    T    314.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:348,27,0
7    4259989    rs13224208    G    C    207.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
7    4266963    rs80155066    C    T    278.68    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.328;MQ=59.36;MQ0=0;MQRankSum=1.031;QD=9.61;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:19,10:29:99:309,0,592
7    4267072    rs597636    T    A    1036.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.347;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.126;QD=25.92;ReadPosRankSum=-1.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    1/1:1,39:40:61.03:1070,61,0
7    4272845    rs2880459    G    A    345.52    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.336;DB;DP=22;Dels=0.0;FS=1.885;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.601;QD=15.71;ReadPosRankSum=1.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:9,13:22:99:376,0,197
7    4277219    rs73050208    G    A    551.03    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.904;QD=18.37;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:11,19:30:99:581,0,365
7    4308362    rs8514    C    T    819.87    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=60;Dels=0.0;FS=3.554;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.086;QD=13.66;ReadPosRankSum=-0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389531    GT:AD:DP:GQ:PL    0/1:28,32:60:99:850,0,752
7    4490854    rs314605    C    T    417.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:450,33,0
7    4490935    rs369198    C    T    107.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.98;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
7    4829387    .    C    T    44.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0415;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477454    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:75,0,23
7    4841470    rs414035    T    C    151.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.27;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RADIL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000544486    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:184,15,0
7    4876387    rs3763382    A    G    74.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.6;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RADIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316919    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,148
7    4900095    rs1553960    A    G    2316.06    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.124;DB;DP=169;Dels=0.0;FS=1.343;HRun=0;HaplotypeScore=1.612;MQ=59.86;MQ0=0;MQRankSum=-0.332;QD=13.7;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=N448;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4897364_4901625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404991    GT:AD:DP:GQ:PL    0/1:91,78:169:99:2346,0,3176
7    4900341    rs17135247    G    A    2604.79    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.403;DB;DP=183;Dels=0.0;FS=1.169;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.118;QD=14.23;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=S366;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4897364_4901625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404991    GT:AD:DP:GQ:PL    0/1:94,89:183:99:2635,0,2915
7    4901385    rs3750009    A    C    277.97    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DB;DP=17;Dels=0.0;FS=3.233;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.529;QD=16.35;ReadPosRankSum=-0.433;SNPEFF_AMINO_ACID_CHANGE=N18K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4897364_4901625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPOLB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404991    GT:AD:DP:GQ:PL    0/1:8,9:17:99:308,0,230
7    4946877    rs10951714    T    C    466.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401401    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:500,39,0
7    4946973    rs10951715    A    G    1183.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=29.58;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401401    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1216,102,0
7    4949811    rs6964162    C    T    628.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401401    GT:AD:DP:GQ:PL    1/1:0,18:18:51.13:661,51,0
7    4959789    rs932060    G    A    120.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401401    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
7    4959807    rs932061    G    A    170.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.34;SNPEFF_AMINO_ACID_CHANGE=H95;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_4959802_4959962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401401    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
7    4968745    rs78466900    G    C    61.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.27;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401401    GT:AD:DP:GQ:PL    0/1:3,3:6:91.63:92,0,103
7    5023420    rs6965043    A    G    363.95    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=24;Dels=0.0;FS=2.622;HRun=0;HaplotypeScore=0.0;MQ=29.28;MQ0=7;MQRankSum=1.212;QD=15.16;ReadPosRankSum=-1.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407184    GT:AD:DP:GQ:PL    0/1:9,15:24:77.03:394,0,77
7    5023453    rs71871679    TTTG    T    120.53    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=91.8617;IndelType=D;MQ=33.51;MQ0=3;MQRankSum=-0.933;QD=6.03;ReadPosRankSum=-1.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407184    GT:AD:DP:GQ:PL    0/1:15,5:16:99:160,0,495
7    5026170    rs66765645    TA    T    359.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=32.2558;IndelType=D;MQ=25.23;MQ0=3;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407184    GT:AD:DP:GQ:PL    1/1:1,15:11:33.10:401,33,0
7    5028483    rs56223615    C    T    242.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407184    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
7    5036641    rs9639892    C    T    379.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407184    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:413,30,0
7    5096958    rs11975068    T    C    3343.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7884;MQ=57.24;MQ0=0;MQRankSum=1.592;QD=33.77;ReadPosRankSum=-0.997;SNPEFF_AMINO_ACID_CHANGE=D16;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5096926_5097052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353796    GT:AD:DP:GQ:PL    1/1:1,98:99:99:3343,216,0
7    5105133    rs12334144    C    T    3822.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=N682;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5103326_5106888;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353796    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3823,283,0
7    5232881    rs6463314    C    A    987.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.98;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288828    GT:AD:DP:GQ:PL    1/1:0,28:28:81.25:1021,81,0
7    5239319    .    TA    T    32.20    QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=0.568;DP=52;FS=0.0;HRun=16;HaplotypeScore=298.8414;IndelType=D;MQ=57.29;MQ0=0;MQRankSum=0.921;QD=0.62;ReadPosRankSum=-0.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288828    GT:AD:DP:GQ:PL    0/1:39,9:52:71.23:71,0,431
7    5254218    rs41280678    G    A    927.99    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=67;Dels=0.0;FS=0.944;HRun=0;HaplotypeScore=2.5594;MQ=59.66;MQ0=0;MQRankSum=1.418;QD=13.85;ReadPosRankSum=0.132;SNPEFF_AMINO_ACID_CHANGE=V29;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5253900_5254335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000484262    GT:AD:DP:GQ:PL    0/1:37,30:67:99:958,0,1201
7    5254227    rs4587243    C    G    2419.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.981;MQ=59.66;MQ0=0;QD=36.12;SNPEFF_AMINO_ACID_CHANGE=V32;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5253900_5254335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000484262    GT:AD:DP:GQ:PL    1/1:0,66:67:99:2453,184,0
7    5256582    rs3801043    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485854    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    5257490    rs7791896    T    C    2984.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485854    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3017,232,0
7    5262151    rs62441068    C    T    1208.38    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.997;DB;DP=76;Dels=0.0;FS=17.731;HRun=0;HaplotypeScore=2.8781;MQ=59.39;MQ0=0;MQRankSum=0.466;QD=15.9;ReadPosRankSum=-0.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475309    GT:AD:DP:GQ:PL    0/1:32,44:76:99:1238,0,1081
7    5269424    rs7785898    A    C    111.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480238    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
7    5327680    rs12540125    A    G    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297195    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,111
7    5331307    rs12667188    A    G    697.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.95;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297195    GT:AD:DP:GQ:PL    1/1:0,22:22:63.17:730,63,0
7    5334289    rs6952755    T    C    273.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434816    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:306,24,0
7    5334321    rs6948544    A    G    397.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=56.04;MQ0=0;QD=33.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434816    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:431,36,0
7    5334469    rs4724524    G    T    2260.54    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=59.7563;MQ=58.81;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434816    GT:AD:DP:GQ:PL    1/1:0,69:70:99:2294,178,0
7    5334472    rs10623123    C    CCT    3215.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.681;DB;DP=74;FS=4.523;HRun=0;HaplotypeScore=435.2924;IndelType=I;MQ=58.69;MQ0=0;MQRankSum=0.306;QD=43.45;ReadPosRankSum=0.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434816    GT:AD:DP:GQ:PL    1/1:11,63:74:99:3257,168,0
7    5334582    rs59119551    C    T    660.32    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.02;MQ0=0;MQRankSum=0.159;QD=11.19;ReadPosRankSum=-0.614;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434816    GT:AD:DP:GQ:PL    0/1:29,30:59:99:690,0,875
7    5334636    rs11760864    A    T    382.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.872;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.564;QD=14.72;ReadPosRankSum=-0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434816    GT:AD:DP:GQ:PL    0/1:13,13:26:99:413,0,408
7    5338475    rs3889348    A    G    165.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297195    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
7    5342474    rs149588788    C    T    31.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=55.84;MQ0=0;MQRankSum=0.55;QD=4.46;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S485;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5342428_5343691;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406453    GT:AD:DP:GQ:PL    0/1:4,3:7:61.24:61,0,114
7    5347295    rs7794563    A    G    206.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297195    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
7    5347749    rs9639976    G    A    283.03    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.113;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6649;MQ=60.0;MQ0=0;MQRankSum=-0.254;QD=20.22;ReadPosRankSum=-0.254;SNPEFF_AMINO_ACID_CHANGE=P2965;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5346421_5347943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399537    GT:AD:DP:GQ:PL    0/1:4,10:14:27.12:313,0,27
7    5391248    rs13228671    A    T    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440081    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
7    5391702    rs3801048    C    G    770.64    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.586;DB;DP=60;Dels=0.0;FS=2.338;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.055;QD=12.84;ReadPosRankSum=-1.9;SNPEFF_AMINO_ACID_CHANGE=E1740Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5391450_5391725;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399537    GT:AD:DP:GQ:PL    0/1:26,33:60:99:801,0,737
7    5396479    rs111777381    G    A    139.97    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=50.58;MQ0=0;MQRankSum=0.0;QD=11.66;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327499    GT:AD:DP:GQ:PL    0/1:5,7:12:44.78:170,0,45
7    5396715    rs35508364    T    C    2162.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=31.35;SNPEFF_AMINO_ACID_CHANGE=N166D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5396547_5396907;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440081    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2196,169,0
7    5396955    rs7805732    A    G    669.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327499    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:702,51,0
7    5398902    rs12534467    T    C    661.24    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.754;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=22.04;ReadPosRankSum=0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327499    GT:AD:DP:GQ:PL    0/1:11,19:30:99:691,0,353
7    5399044    rs12531309    C    G    2690.43    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.801;DB;DP=233;Dels=0.0;FS=1.678;HRun=1;HaplotypeScore=3.3935;MQ=59.72;MQ0=0;MQRankSum=-0.78;QD=11.55;ReadPosRankSum=-1.219;SNPEFF_AMINO_ACID_CHANGE=S1606;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5399029_5399200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399537    GT:AD:DP:GQ:PL    0/1:123,109:233:99:2720,0,3402
7    5409937    rs58182076    C    T    426.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.205;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.615;QD=16.42;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327499    GT:AD:DP:GQ:PL    0/1:13,13:26:99:457,0,367
7    5410425    rs12671708    G    C    115    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=3.01;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=11.5;ReadPosRankSum=-1.133;SNPEFF_AMINO_ACID_CHANGE=A1267G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5410006_5410995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399537    GT:AD:DP:GQ:PL    0/1:4,6:10:99:145,0,110
7    5417421    rs7796767    A    G    54.09    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=6.76;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327499    GT:AD:DP:GQ:PL    0/1:5,3:8:84.08:84,0,170
7    5427128    rs4724662    G    A    112.17    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=18.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399434    GT:AD:DP:GQ:PL    0/1:1,5:6:26.18:142,0,26
7    5427720    rs4724663    A    G    87.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.96;SNPEFF_AMINO_ACID_CHANGE=S579P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5427303_5428967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399537    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
7    5430283    rs67295626    G    A    73.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.21;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327499    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,108
7    5434135    rs4724668    A    G    119.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=19.99;SNPEFF_AMINO_ACID_CHANGE=S19;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5434071_5434226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399434    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:152,12,0
7    5460704    rs150268036    G    A    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_AMINO_ACID_CHANGE=L58;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5460691_5461120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399537    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
7    5521219    rs10046576    T    C    407.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415009    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:441,33,0
7    5528883    rs4724701    G    A    2924.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.9;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=I805;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5528880_5528927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXL18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312577    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2958,220,0
7    5529085    rs4724702    A    G    586.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297035    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:620,45,0
7    5529758    rs28566736    G    A    1543.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=29.69;SNPEFF_AMINO_ACID_CHANGE=R696C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5529474_5529843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXL18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312577    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1577,126,0
7    5529922    rs4077245    A    C    365.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=36.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297035    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
7    5530827    rs3801057    G    A    115.40    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.49;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297035    GT:AD:DP:GQ:PL    0/1:3,4:7:76.86:145,0,77
7    5540769    rs6953642    A    C    82.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.482;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.64;MQ0=0;MQRankSum=-0.234;QD=4.58;ReadPosRankSum=-2.014;SNPEFF_AMINO_ACID_CHANGE=T377;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5540119_5541662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXL18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312577    GT:AD:DP:GQ:PL    0/1:12,6:18:99:112,0,399
7    5541657    rs4724704    G    A    92.57    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=8.42;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=S81;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5540119_5541662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXL18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312577    GT:AD:DP:GQ:PL    0/1:7,4:11:99:123,0,191
7    5567112    rs7612    C    T    53.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.72;QD=8.84;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320713    GT:AD:DP:GQ:PL    0/1:2,4:6:66.26:83,0,66
7    5567254    .    CA    C    184.72    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DP=56;FS=0.0;HRun=16;HaplotypeScore=468.8127;IndelType=D;MQ=52.31;MQ0=0;MQRankSum=0.217;QD=3.3;ReadPosRankSum=-0.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320713    GT:AD:DP:GQ:PL    0/1:28,19:56:99:224,0,444
7    5567277    rs17136418    C    A    88.89    HaplotypeScoreFilter13;QDFilter2    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.756;DB;DP=73;Dels=0.01;FS=0.0;HRun=4;HaplotypeScore=27.3521;MQ=52.03;MQ0=0;MQRankSum=-3.324;QD=1.2;ReadPosRankSum=2.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414620    GT:AD:DP:GQ:PL    0/1:41,32:73:99:119,0,843
7    5567596    rs852424    C    T    1336.13    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DB;DP=87;Dels=0.0;FS=3.02;HRun=0;HaplotypeScore=0.8667;MQ=58.66;MQ0=0;MQRankSum=0.76;QD=15.36;ReadPosRankSum=-1.173;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414620    GT:AD:DP:GQ:PL    0/1:44,43:87:99:1366,0,1242
7    5568366    rs852423    A    G    872.86    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=2.773;DB;DP=56;Dels=0.0;FS=9.12;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=2.602;QD=15.59;ReadPosRankSum=-0.759;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414620    GT:AD:DP:GQ:PL    0/1:23,33:56:99:903,0,640
7    5568493    rs852422    A    G    112.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414620    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:145,12,0
7    5569327    rs2908425    G    A    301.45    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.128;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.154;QD=11.16;ReadPosRankSum=-0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320713    GT:AD:DP:GQ:PL    0/1:13,14:27:99:331,0,422
7    5643278    rs11974907    C    T    348.28    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=19;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.986;QD=18.33;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340250    GT:AD:DP:GQ:PL    0/1:7,12:19:99:378,0,150
7    5645114    rs116867877    C    T    32.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.78;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405801    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:62,0,23
7    5691982    rs148675517    A    G    602.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.383;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.583;QD=17.22;ReadPosRankSum=0.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389902    GT:AD:DP:GQ:PL    0/1:15,20:35:99:633,0,519
7    5730496    rs852261    C    T    1272.69    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=4.349;DB;DP=78;Dels=0.0;FS=0.881;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=1.992;QD=16.32;ReadPosRankSum=-0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389902    GT:AD:DP:GQ:PL    0/1:33,45:78:99:1303,0,908
7    5751250    rs3735289    G    A    159.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389902    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:193,15,0
7    5755007    rs2287595    G    A    211.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389902    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
7    5756155    rs117238116    A    C    32.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.42;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389902    GT:AD:DP:GQ:PL    0/1:3,2:5:62.10:62,0,108
7    5760971    rs4720636    A    T    122.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389902    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
7    5769150    rs61753114    G    A    2064.77    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.535;DB;DP=120;Dels=0.0;FS=3.778;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=2.296;QD=17.21;ReadPosRankSum=-0.31;SNPEFF_AMINO_ACID_CHANGE=L189;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5769063_5769227;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458425    GT:AD:DP:GQ:PL    0/1:49,71:120:99:2095,0,1539
7    5770454    rs139784853    G    A    128.96    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=18.66;MQ0=29;MQRankSum=0.825;QD=3.22;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389902    GT:AD:DP:GQ:PL    0/1:25,15:40:99:159,0,193
7    5770520    rs118091826    G    A    210.92    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=37.82;MQ0=1;MQRankSum=0.555;QD=15.07;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389902    GT:AD:DP:GQ:PL    0/1:7,7:14:99:241,0,196
7    5778791    rs75422147    A    C    82.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.65;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411812    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:113,0,30
7    5778847    rs117488276    T    C    209.01    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.903;QD=12.29;ReadPosRankSum=-0.049;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411812    GT:AD:DP:GQ:PL    0/1:7,10:17:99:239,0,220
7    5780537    rs139686645    G    GA    128.98    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=26;FS=0.0;HRun=12;HaplotypeScore=102.2154;IndelType=I;MQ=59.11;MQ0=0;MQRankSum=0.425;QD=4.96;ReadPosRankSum=1.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411812    GT:AD:DP:GQ:PL    0/1:15,9:26:99:168,0,235
7    5800769    rs3857756    A    G    767.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.26;MQ0=0;QD=34.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF216;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476345    GT:AD:DP:GQ:PL    1/1:0,22:22:63.18:801,63,0
7    5923738    rs3890913    A    C    292.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.03;MQ0=6;QD=13.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242104    GT:AD:DP:GQ:PL    1/1:0,21:21:33.05:326,33,0
7    5941209    rs2024003    T    C    111.37    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=15;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=0.0;MQ=51.45;MQ0=1;MQRankSum=-0.696;QD=7.42;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461592    GT:AD:DP:GQ:PL    0/1:8,7:15:99:141,0,208
7    5942490    rs147427745    A    G    63.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.56;MQ0=0;MQRankSum=0.0;QD=6.35;ReadPosRankSum=-2.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461592    GT:AD:DP:GQ:PL    0/1:6,4:10:93.48:93,0,192
7    5944913    rs150061010    C    T    162.83    MQFilter40;QDFilter2    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.63;MQ0=75;MQRankSum=0.836;QD=1.71;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461592    GT:AD:DP:GQ:PL    0/1:71,23:95:99:193,0,290
7    5949830    rs11771500    C    T    66.81    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.32;MQ0=1;MQRankSum=1.3;QD=8.35;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325974    GT:AD:DP:GQ:PL    0/1:4,4:8:91.44:97,0,91
7    5958650    rs138701366    G    A    380.52    MQFilter40    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.213;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=22.85;MQ0=0;MQRankSum=-1.466;QD=8.85;ReadPosRankSum=0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325974    GT:AD:DP:GQ:PL    0/1:19,24:43:99:411,0,412
7    5959485    .    G    A    358.14    MQFilter40    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.477;DP=147;Dels=0.0;FS=4.891;HRun=0;HaplotypeScore=0.9578;MQ=27.9;MQ0=6;MQRankSum=0.043;QD=2.44;ReadPosRankSum=1.018;SNPEFF_AMINO_ACID_CHANGE=V189I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5959480_5959597;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537980    GT:AD:DP:GQ:PL    0/1:118,29:147:99:388,0,2234
7    5959661    .    C    T    414.05    MQFilter40    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.758;DP=78;Dels=0.0;FS=2.579;HRun=4;HaplotypeScore=0.0;MQ=27.18;MQ0=9;MQRankSum=1.655;QD=5.31;ReadPosRankSum=-1.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325974    GT:AD:DP:GQ:PL    0/1:54,24:78:99:444,0,919
7    5965258    .    T    C    276.30    MQFilter40;QDFilter2    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DP=166;Dels=0.0;FS=1.069;HRun=0;HaplotypeScore=1.6988;MQ=20.92;MQ0=39;MQRankSum=-1.138;QD=1.66;ReadPosRankSum=-0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337579    GT:AD:DP:GQ:PL    0/1:124,42:166:99:306,0,1799
7    5965288    rs138347457    G    A    147.06    MQFilter40;QDFilter2    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=1.279;DB;DP=186;Dels=0.0;FS=1.138;HRun=0;HaplotypeScore=1.5362;MQ=18.66;MQ0=57;MQRankSum=-0.905;QD=0.79;ReadPosRankSum=-0.685;SNPEFF_AMINO_ACID_CHANGE=T330;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5965263_5965601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537980    GT:AD:DP:GQ:PL    0/1:139,47:186:99:177,0,1578
7    5965334    rs150333500    C    T    390.97    MQFilter40    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=6.798;DB;DP=143;Dels=0.0;FS=11.619;HRun=0;HaplotypeScore=0.9578;MQ=14.91;MQ0=56;MQRankSum=-0.787;QD=2.73;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337579    GT:AD:DP:GQ:PL    0/1:70,73:143:99:421,0,467
7    5965381    .    G    A    30.28    MQFilter40;QDFilter2    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DP=100;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=18.08;MQ0=31;MQRankSum=-0.198;QD=0.3;ReadPosRankSum=-0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337579    GT:AD:DP:GQ:PL    0/1:77,23:100:60.27:60,0,778
7    5965398    .    G    A    194.84    MQFilter40    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=1.4;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1079;MQ=21.28;MQ0=20;MQRankSum=1.967;QD=2.47;ReadPosRankSum=0.577;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337579    GT:AD:DP:GQ:PL    0/1:59,18:79:99:225,0,746
7    5968053    rs61032858    A    G    432.08    MQFilter40    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=143;DS;Dels=0.0;FS=2.971;HRun=0;HaplotypeScore=0.0;MQ=25.28;MQ0=25;MQRankSum=-0.523;QD=3.02;ReadPosRankSum=-0.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325974    GT:AD:DP:GQ:PL    0/1:102,41:143:99:462,0,1502
7    5968161    rs150126745    C    G    248.84    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.665;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=37.18;MQ0=2;MQRankSum=2.43;QD=11.31;ReadPosRankSum=0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325974    GT:AD:DP:GQ:PL    0/1:14,8:22:99:279,0,205
7    5977642    .    C    CCA    528.20    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.44;DP=27;FS=0.0;HRun=0;HaplotypeScore=69.7076;IndelType=I;MQ=19.79;MQ0=14;MQRankSum=-0.558;QD=12.88;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337579    GT:AD:DP:GQ:PL    0/1:27,14:27:99:567,0,442
7    5983012    rs150999559    A    G    1251.82    MQFilter40    AB=0.218;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.96;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.24;MQ0=49;MQRankSum=1.784;QD=10.52;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=S426;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5982955_5983103;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354951    GT:AD:DP:GQ:PL    0/1:26,93:119:99:1282,0,237
7    5983063    rs148485394    C    T    433.63    HaplotypeScoreFilter13;MQFilter40    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.2;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=16.9324;MQ=25.07;MQ0=46;MQRankSum=-0.315;QD=3.77;ReadPosRankSum=-0.161;SNPEFF_AMINO_ACID_CHANGE=M409I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5982955_5983103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354951    GT:AD:DP:GQ:PL    0/1:84,31:115:99:464,0,1304
7    5983070    rs144996986    T    C    313.64    HaplotypeScoreFilter13;MQFilter40    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=5.318;DB;DP=118;Dels=0.0;FS=4.026;HRun=0;HaplotypeScore=16.9324;MQ=26.69;MQ0=45;MQRankSum=-2.369;QD=2.66;ReadPosRankSum=2.186;SNPEFF_AMINO_ACID_CHANGE=Y407C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5982955_5983103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354951    GT:AD:DP:GQ:PL    0/1:92,26:118:99:344,0,1618
7    5983195    rs138475267    C    A    879.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.3;MQ0=4;QD=30.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337579    GT:AD:DP:GQ:PL    1/1:0,29:29:72.21:913,72,0
7    5983553    rs80120223    A    C    367.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.81;MQ0=28;QD=5.83;SNPEFF_AMINO_ACID_CHANGE=F392C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5983542_5983621;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354951    GT:AD:DP:GQ:PL    1/1:0,63:63:45.01:400,45,0
7    5984580    .    C    T    51.89    MQFilter40;QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.548;DP=46;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.95;MQ0=18;MQRankSum=-1.092;QD=1.1;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337579    GT:AD:DP:GQ:PL    0/1:34,12:46:81.88:82,0,562
7    5984721    .    C    T    105.76    MQFilter40;QDFilter2    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=3.181;DP=219;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=8.86;MQ0=193;MQRankSum=0.858;QD=0.48;ReadPosRankSum=-0.194;SNPEFF_AMINO_ACID_CHANGE=A267;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_5984695_5984809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539903    GT:AD:DP:GQ:PL    0/1:166,52:219:99:136,0,383
7    6003902    rs115232049    G    A    62.65    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.0;MQ0=0;MQRankSum=0.0;QD=10.44;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RSPH10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455618    GT:AD:DP:GQ:PL    0/1:2,4:6:34.34:93,0,34
7    6013049    .    C    G    203.99    MQFilter40;QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.31;MQ0=103;MQRankSum=-0.048;QD=1.69;ReadPosRankSum=1.684;SNPEFF_AMINO_ACID_CHANGE=G456A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6013030_6013173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382321    GT:AD:DP:GQ:PL    0/1:91,29:121:99:234,0,254
7    6013153    .    A    G    91.43    MQFilter40;QDFilter2    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DP=176;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.78;MQ0=168;MQRankSum=0.421;QD=0.52;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=L421;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6013030_6013173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382321    GT:AD:DP:GQ:PL    0/1:98,78:176:99:121,0,112
7    6026775    rs2228006    T    C    3690.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.23;MQ0=1;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=K435E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6026390_6027251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441476    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3690,292,0
7    6026988    rs1805321    G    A    1588.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.65;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=P364S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6026390_6027251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441476    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1622,120,0
7    6027308    .    C    T    81.76    MQFilter40;QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=3.556;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.64;MQ0=21;MQRankSum=-1.717;QD=1.12;ReadPosRankSum=0.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265849    GT:AD:DP:GQ:PL    0/1:57,16:73:99:112,0,957
7    6035428    rs2286681    A    C    31.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265849    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
7    6036980    rs1805319    G    C    406.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.76;MQ0=0;QD=25.38;SNPEFF_AMINO_ACID_CHANGE=S154;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6036957_6037054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441476    GT:AD:DP:GQ:PL    1/1:0,16:16:36.09:439,36,0
7    6037057    rs61373265    GA    G    157.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=17;HaplotypeScore=110.0899;IndelType=D;MQ=58.45;MQ0=0;QD=6.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380416    GT:AD:DP:GQ:PL    1/1:2,18:23:37.79:200,38,0
7    6038620    rs113336067    CA    C    143.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=16;HaplotypeScore=84.9702;IndelType=D;MQ=53.85;MQ0=0;QD=9.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380416    GT:AD:DP:GQ:PL    1/1:4,10:15:31.35:185,31,0
7    6038722    rs62456182    T    C    2128.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=32.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380416    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2161,160,0
7    6042522    rs11769380    C    T    129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415839    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
7    6043112    rs6463526    C    T    194.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265849    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
7    6045385    rs62456183    T    C    1789.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.54;MQ0=0;QD=40.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265849    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1823,132,0
7    6063283    rs4560    C    T    2371.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=N230;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6062934_6063326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIMP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400479    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2405,178,0
7    6065804    rs10263017    G    C    175.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=25.08;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223029    GT:AD:DP:GQ:PL    1/1:1,6:7:15.05:208,15,0
7    6065914    rs10253000    T    C    90.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223029    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
7    6066057    rs34019419    G    GC    246.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=12.1609;IndelType=I;MQ=56.82;MQ0=0;QD=41.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223029    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:288,18,0
7    6066783    rs2240816    C    T    214.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=35.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223029    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
7    6068377    rs78617732    C    T    329.47    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.111;QD=18.3;ReadPosRankSum=1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223029    GT:AD:DP:GQ:PL    0/1:8,10:18:99:359,0,277
7    6071060    rs4724769    G    A    1802.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=35.35;SNPEFF_AMINO_ACID_CHANGE=K18;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6071007_6071222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1836,138,0
7    6071277    rs4724770    A    G    1209.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1242,96,0
7    6075823    rs2302334    A    T    2254.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_AMINO_ACID_CHANGE=M355L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6075075_6076017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2287,169,0
7    6077269    rs2302333    G    T    3441.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3441,250,0
7    6077307    rs186473649    C    T    985.35    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.622;DB;DP=67;Dels=0.0;FS=1.332;HRun=0;HaplotypeScore=2.8535;MQ=59.66;MQ0=0;MQRankSum=-0.795;QD=14.71;ReadPosRankSum=0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    0/1:32,34:67:99:1015,0,1026
7    6078010    rs3857757    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
7    6078079    rs3847023    A    T    317.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:350,27,0
7    6078376    rs2302331    A    C    288.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
7    6080853    rs112553075    GA    G    629.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=13;HaplotypeScore=205.9539;IndelType=D;MQ=61.02;MQ0=0;QD=12.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409061    GT:AD:DP:GQ:PL    1/1:13,34:50:95.41:672,95,0
7    6084310    rs511969    G    T    622.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431744    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:656,48,0
7    6088339    rs523254    T    C    506.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461493    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:539,39,0
7    6088349    rs523276    A    G    517.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461493    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:550,45,0
7    6088533    rs525090    C    T    654.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461493    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:688,51,0
7    6155166    rs62454267    G    T    1499.81    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=4.589;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.71;MQ0=0;MQRankSum=-0.055;QD=18.75;ReadPosRankSum=0.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451154    GT:AD:DP:GQ:PL    0/1:33,47:80:99:1530,0,995
7    6199166    rs7783538    C    T    1649.03    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=6.241;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=15.56;ReadPosRankSum=-1.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350796    GT:AD:DP:GQ:PL    0/1:52,54:106:99:1679,0,1373
7    6204999    rs2301910    A    C    1224.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_AMINO_ACID_CHANGE=T259;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6204904_6205058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396741    GT:AD:DP:GQ:PL    1/1:0,36:36:96.30:1257,96,0
7    6370194    rs6952125    C    T    1201.95    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.928;DB;DP=96;Dels=0.0;FS=4.014;HRun=0;HaplotypeScore=0.9894;MQ=59.32;MQ0=0;MQRankSum=-0.495;QD=12.52;ReadPosRankSum=-0.982;SNPEFF_AMINO_ACID_CHANGE=V198M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6369040_6370866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313324    GT:AD:DP:GQ:PL    0/1:53,43:96:99:1232,0,1481
7    6370305    rs3750039    C    G    794.26    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.602;DB;DP=51;Dels=0.0;FS=1.193;HRun=0;HaplotypeScore=1.7866;MQ=59.09;MQ0=0;MQRankSum=-0.515;QD=15.57;ReadPosRankSum=1.117;SNPEFF_AMINO_ACID_CHANGE=V161L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6369040_6370866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313324    GT:AD:DP:GQ:PL    0/1:26,25:51:99:824,0,827
7    6370406    rs3750040    C    T    771.35    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.798;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9399;MQ=58.36;MQ0=0;MQRankSum=0.079;QD=10.86;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=R127Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6369040_6370866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313324    GT:AD:DP:GQ:PL    0/1:40,31:71:99:801,0,1032
7    6426941    rs702483    C    T    848.93    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.022;DB;DP=61;Dels=0.0;FS=3.996;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=13.92;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348035    GT:AD:DP:GQ:PL    0/1:31,30:61:99:879,0,930
7    6431404    rs836480    G    T    38.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.69;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348035    GT:AD:DP:GQ:PL    0/1:3,2:5:68.42:68,0,86
7    6431457    rs3729793    C    G    112.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.054;QD=12.51;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348035    GT:AD:DP:GQ:PL    0/1:3,6:9:85.50:143,0,86
7    6431690    rs836478    C    T    655.84    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.631;DB;DP=55;Dels=0.0;FS=9.623;HRun=4;HaplotypeScore=0.7887;MQ=56.52;MQ0=0;MQRankSum=1.716;QD=11.92;ReadPosRankSum=1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348035    GT:AD:DP:GQ:PL    0/1:30,25:55:99:686,0,929
7    6438217    rs35761891    A    G    167.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.097;QD=11.15;ReadPosRankSum=1.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348035    GT:AD:DP:GQ:PL    0/1:9,6:15:99:197,0,281
7    6439945    rs836549    A    G    436.02    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.784;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=21.8;ReadPosRankSum=0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348035    GT:AD:DP:GQ:PL    0/1:6,14:20:99:466,0,167
7    6441799    rs836551    G    C    411.15    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=25;Dels=0.0;FS=3.524;HRun=0;HaplotypeScore=0.9665;MQ=58.31;MQ0=0;MQRankSum=0.058;QD=16.45;ReadPosRankSum=-0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348035    GT:AD:DP:GQ:PL    0/1:12,13:25:99:441,0,363
7    6456669    rs836508    C    T    41.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAGLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297056    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:71,0,31
7    6461348    rs836514    G    A    387.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.401;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.83;QD=12.93;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAGLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432248    GT:AD:DP:GQ:PL    0/1:15,15:30:99:418,0,377
7    6474073    rs836534    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAGLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479922    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
7    6474158    rs836535    G    A    73.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.406;QD=12.23;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAGLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479922    GT:AD:DP:GQ:PL    0/1:3,3:6:96.61:103,0,97
7    6485556    rs73342964    G    T    475.21    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=39;Dels=0.0;FS=2.09;HRun=1;HaplotypeScore=0.6651;MQ=59.41;MQ0=0;MQRankSum=0.184;QD=12.18;ReadPosRankSum=-0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KDELR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463747    GT:AD:DP:GQ:PL    0/1:22,17:39:99:505,0,667
7    6487293    rs57933653    G    C    89.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAGLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297056    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    6505901    rs2230263    T    C    1722.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=36.64;SNPEFF_AMINO_ACID_CHANGE=L135;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6505702_6505954;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KDELR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258739    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1755,129,0
7    6513779    rs17777087    T    C    247.02    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.716;DB;DP=21;Dels=0.0;FS=4.191;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.688;QD=11.76;ReadPosRankSum=1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAGLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436575    GT:AD:DP:GQ:PL    0/1:13,8:21:99:277,0,407
7    6513963    rs71531394    A    C    213.86    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=16.45;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAGLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436575    GT:AD:DP:GQ:PL    0/1:6,7:13:99:244,0,207
7    6537821    rs6463568    G    C    260.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.1;SNPEFF_AMINO_ACID_CHANGE=L1146;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6537695_6537859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457091    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:294,24,0
7    6541347    rs7791451    C    T    202.92    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=15.61;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435185    GT:AD:DP:GQ:PL    0/1:5,8:13:99:233,0,135
7    6544247    rs12702519    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435185    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    6544630    rs78696194    G    A    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435185    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
7    6549867    rs74487555    G    A    96.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.08;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435185    GT:AD:DP:GQ:PL    0/1:2,4:6:60.39:126,0,60
7    6550403    rs34411495    A    G    56.96    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=14.24;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435185    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:87,0,21
7    6550494    rs12702520    G    A    260.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435185    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:294,24,0
7    6566050    .    C    T    99.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9731;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=12.4;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435185    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,135
7    6591041    rs4724818    C    G    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_AMINO_ACID_CHANGE=T9;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6590639_6591067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID2IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457091    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
7    6621277    rs11559146    G    A    427.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.926;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=11.55;ReadPosRankSum=-2.117;SNPEFF_AMINO_ACID_CHANGE=V53M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6621238_6621311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335965    GT:AD:DP:GQ:PL    0/1:20,16:37:99:457,0,672
7    6622800    rs7357134    G    C    36.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.06;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489138    GT:AD:DP:GQ:PL    0/1:4,2:6:66.35:66,0,139
7    6628242    rs3088114    T    C    641.96    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=53;Dels=0.0;FS=1.141;HRun=2;HaplotypeScore=2.8724;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.11;ReadPosRankSum=0.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474097    GT:AD:DP:GQ:PL    0/1:28,25:53:99:672,0,894
7    6641635    rs13246348    C    T    361.31    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.863;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.863;QD=12.46;ReadPosRankSum=1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344417    GT:AD:DP:GQ:PL    0/1:17,12:29:99:391,0,606
7    6647738    rs4416743    T    C    92.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.41;SNPEFF_AMINO_ACID_CHANGE=H335;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6647591_6648355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359073    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:124,9,0
7    6683454    rs2253869    A    G    376.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073343.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382252    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:409,30,0
7    6683910    rs2253770    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073343.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382252    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:79,6,0
7    6692137    rs189975373    C    T    37.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073343.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382252    GT:AD:DP:GQ:PL    0/1:1,2:3:18.64:67,0,19
7    6692605    rs1474419    T    C    274.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC073343.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427912    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:307,24,0
7    6744957    rs7798471    T    C    219.84    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.646;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.42;QD=9.56;ReadPosRankSum=-0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330442    GT:AD:DP:GQ:PL    0/1:15,8:23:99:250,0,557
7    6771552    .    G    A    279.61    MQFilter40    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.95;MQ0=39;MQRankSum=0.317;QD=4.66;ReadPosRankSum=0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338780    GT:AD:DP:GQ:PL    0/1:41,19:60:99:310,0,251
7    6771660    rs116139393    C    G    391.38    MQFilter40    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.68;DB;DP=31;Dels=0.0;FS=6.495;HRun=0;HaplotypeScore=0.9832;MQ=37.28;MQ0=0;MQRankSum=0.494;QD=12.63;ReadPosRankSum=-1.957;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348899    GT:AD:DP:GQ:PL    0/1:15,16:31:99:421,0,407
7    6775088    rs10951994    A    G    56.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=14.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348899    GT:AD:DP:GQ:PL    1/1:1,3:4:9:89,9,0
7    6776585    rs12539942    C    T    307.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.11;MQ0=3;QD=23.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338780    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:340,30,0
7    6776650    rs7784521    G    A    426.21    MQFilter40    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=3.524;DB;DP=51;Dels=0.0;FS=6.463;HRun=0;HaplotypeScore=0.0;MQ=25.13;MQ0=19;MQRankSum=1.3;QD=8.36;ReadPosRankSum=0.697;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338780    GT:AD:DP:GQ:PL    0/1:28,23:51:99:456,0,453
7    6776956    rs7804542    A    G    1014.87    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.707;DB;DP=85;Dels=0.0;FS=0.829;HRun=0;HaplotypeScore=0.734;MQ=57.49;MQ0=0;MQRankSum=1.641;QD=11.94;ReadPosRankSum=1.258;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338780    GT:AD:DP:GQ:PL    0/1:49,36:85:99:1045,0,1568
7    6777369    rs35291651    T    C    1182.75    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.506;QD=12.72;ReadPosRankSum=-0.952;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338780    GT:AD:DP:GQ:PL    0/1:50,42:93:99:1213,0,1693
7    6790900    .    T    C    110.10    MQFilter40;QDFilter2    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DP=187;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.55;MQ0=178;MQRankSum=-0.729;QD=0.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH10B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403107    GT:AD:DP:GQ:PL    0/1:86,101:187:99:140,0,113
7    6790993    .    C    T    266.96    MQFilter40    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.844;DP=130;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.9;MQ0=112;MQRankSum=0.222;QD=2.05;ReadPosRankSum=0.133;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH10B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403107    GT:AD:DP:GQ:PL    0/1:99,31:130:99:297,0,236
7    6820535    .    A    G    85.38    MQFilter40    AB=0.037;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DP=27;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.5784;MQ=13.8;MQ0=15;MQRankSum=-1.738;QD=3.16;ReadPosRankSum=1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH10B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485129    GT:AD:DP:GQ:PL    0/1:1,26:27:21.99:115,0,22
7    6825450    .    C    T    122.25    MQFilter40    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.0;MQ0=0;MQRankSum=-0.29;QD=5.32;ReadPosRankSum=-0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPH10B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297186    GT:AD:DP:GQ:PL    0/1:15,8:23:99:152,0,346
7    6844574    rs75680229    C    G    941.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.28;MQ0=0;QD=24.15;SNPEFF_AMINO_ACID_CHANGE=M224I;SNPEFF_CODON_CHANGE=atG/atC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6844569_6844686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538180    GT:AD:DP:GQ:PL    1/1:0,39:39:99:975,102,0
7    6845516    rs144852517    C    T    184.89    MQFilter40    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.77;MQ0=4;MQRankSum=1.092;QD=4.2;ReadPosRankSum=0.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462378    GT:AD:DP:GQ:PL    0/1:30,14:44:99:215,0,605
7    6845594    .    C    T    183.22    MQFilter40;QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DP=119;Dels=0.0;FS=4.228;HRun=0;HaplotypeScore=0.0;MQ=13.24;MQ0=72;MQRankSum=0.819;QD=1.54;ReadPosRankSum=0.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462378    GT:AD:DP:GQ:PL    0/1:87,32:119:99:213,0,483
7    6854272    rs11769113    A    T    320.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.15;MQ0=0;QD=32.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490178    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:353,27,0
7    6854312    rs60726007    A    G    34.20    QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.824;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9579;MQ=50.83;MQ0=0;MQRankSum=-3.009;QD=1.63;ReadPosRankSum=-1.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316731    GT:AD:DP:GQ:PL    0/1:15,6:21:64.19:64,0,504
7    6854511    rs143064541    C    G    262.55    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=32;Dels=0.0;FS=3.16;HRun=1;HaplotypeScore=1.7608;MQ=41.22;MQ0=5;MQRankSum=-4.346;QD=8.2;ReadPosRankSum=-1.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316731    GT:AD:DP:GQ:PL    0/1:14,17:32:99:293,0,498
7    6854512    rs58851147    G    A    459.49    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=32;Dels=0.0;FS=3.16;HRun=2;HaplotypeScore=1.7608;MQ=41.22;MQ0=5;MQRankSum=4.295;QD=14.36;ReadPosRankSum=1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316731    GT:AD:DP:GQ:PL    0/1:17,14:32:99:489,0,321
7    6859453    rs145992513    C    G    449.52    MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.618;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.53;MQ0=82;MQRankSum=1.371;QD=4.01;ReadPosRankSum=1.73;SNPEFF_AMINO_ACID_CHANGE=E214D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_6859397_6859572;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316731    GT:AD:DP:GQ:PL    0/1:78,34:112:99:480,0,228
7    6861880    rs2711224    G    C    968.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.57;MQ0=11;QD=20.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464543    GT:AD:DP:GQ:PL    1/1:0,46:47:87.18:1001,87,0
7    6862789    rs6970263    C    T    78.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.37;MQ0=1;MQRankSum=0.731;QD=13.1;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464543    GT:AD:DP:GQ:PL    0/1:2,4:6:29.72:109,0,30
7    6863181    rs4724857    G    A    59.81    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;MQRankSum=0.727;QD=14.95;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf28B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464543    GT:AD:DP:GQ:PL    0/1:1,3:4:15.64:90,0,16
7    6875115    rs34551370    ACT    A    2624.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=0;HaplotypeScore=222.7334;IndelType=D;MQ=32.4;MQ0=15;QD=26.51;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,99:61:99:2666,184,0
7    6875212    rs4724863    C    T    2437.37    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=26.75;MQ0=16;QD=21.38;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,114:114:99:2470,210,0
7    6875278    rs13234838    C    G    2218.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=41.41;MQ0=2;QD=28.81;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,76:77:99:2251,186,0
7    6895394    rs35965767    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.99;MQ0=1;QD=8.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=UNC93B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285383    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
7    6899293    rs13245907    A    G    87.34    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.05;MQ0=0;MQRankSum=0.194;QD=6.24;ReadPosRankSum=-0.065;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=UNC93B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285383    GT:AD:DP:GQ:PL    0/1:8,6:14:99:117,0,226
7    6919707    rs10256981    G    C    631.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508367    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:664,48,0
7    6919749    rs10228609    C    A    917.92    PASS    AB=0.205;AC=1;AF=0.50;AN=2;BaseQRankSum=3.171;DB;DP=44;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.9998;MQ=60.0;MQ0=0;MQRankSum=0.145;QD=20.86;ReadPosRankSum=1.164;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508367    GT:AD:DP:GQ:PL    0/1:9,35:44:99:948,0,253
7    6940220    rs6964263    T    G    251.48    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.739;DB;DP=21;Dels=0.0;FS=7.025;HRun=1;HaplotypeScore=0.0;MQ=53.32;MQ0=0;MQRankSum=-1.655;QD=11.98;ReadPosRankSum=0.246;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490376    GT:AD:DP:GQ:PL    0/1:11,10:21:99:281,0,362
7    6964368    rs57915319    T    C    198.35    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=15;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.734;MQ=56.13;MQ0=0;MQRankSum=-1.22;QD=13.22;ReadPosRankSum=0.209;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482043    GT:AD:DP:GQ:PL    0/1:7,8:15:99:228,0,195
7    6964474    rs60609314    A    G    103.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.12;MQ0=0;MQRankSum=-1.749;QD=8.64;ReadPosRankSum=0.717;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482043    GT:AD:DP:GQ:PL    0/1:6,6:12:99:134,0,184
7    6964606    rs58404784    C    T    135.74    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=15;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=0.0;MQ=54.19;MQ0=0;MQRankSum=0.984;QD=9.05;ReadPosRankSum=-0.637;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482043    GT:AD:DP:GQ:PL    0/1:8,7:15:99:166,0,230
7    6969134    rs34567477    C    T    170.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.07;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478302    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
7    6970253    rs62441214    T    A    274.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.25;MQ0=0;QD=34.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416039    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:308,24,0
7    6970401    rs7800800    T    G    859.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.61;MQ0=0;QD=31.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416039    GT:AD:DP:GQ:PL    1/1:0,27:27:75.13:893,75,0
7    6970587    rs7778693    C    T    313.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.46;MQ0=2;QD=22.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482043    GT:AD:DP:GQ:PL    1/1:1,13:14:30.05:347,30,0
7    6970606    rs111857210    T    G    304.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.98;MQ0=1;QD=25.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482043    GT:AD:DP:GQ:PL    1/1:0,12:12:30.04:338,30,0
7    6970645    rs7801250    T    C    162.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.92;MQ0=1;QD=20.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482043    GT:AD:DP:GQ:PL    1/1:0,8:8:20.98:196,21,0
7    6976105    rs146639701    G    A    1236.01    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=82;Dels=0.0;FS=5.818;HRun=0;HaplotypeScore=2.6616;MQ=58.3;MQ0=0;MQRankSum=0.487;QD=15.07;ReadPosRankSum=1.113;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416039    GT:AD:DP:GQ:PL    0/1:38,44:82:99:1266,0,1076
7    6976304    rs190101499    A    G    1314.22    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.266;DB;DP=121;Dels=0.0;FS=2.51;HRun=1;HaplotypeScore=0.0;MQ=45.69;MQ0=0;MQRankSum=-0.122;QD=10.86;ReadPosRankSum=-1.801;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478302    GT:AD:DP:GQ:PL    0/1:65,56:121:99:1344,0,1846
7    6977551    rs62441250    C    T    1048.59    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.522;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.149;MQ=51.38;MQ0=1;MQRankSum=-4.53;QD=9.62;ReadPosRankSum=-0.441;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478302    GT:AD:DP:GQ:PL    0/1:64,45:109:99:1079,0,1899
7    6977557    rs62441251    G    A    1154.83    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=5.59;DB;DP=117;Dels=0.0;FS=1.578;HRun=0;HaplotypeScore=2.1623;MQ=51.18;MQ0=1;MQRankSum=-4.623;QD=9.87;ReadPosRankSum=-0.534;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478302    GT:AD:DP:GQ:PL    0/1:69,48:117:99:1185,0,1916
7    6977578    rs9771256    C    T    3767.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DB;DP=116;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.9989;MQ=50.38;MQ0=1;MQRankSum=0.031;QD=32.48;ReadPosRankSum=-0.309;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478302    GT:AD:DP:GQ:PL    1/1:1,114:116:99:3767,253,0
7    6977705    rs62441252    T    C    572.47    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.873;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.69;MQ0=1;MQRankSum=-3.614;QD=13.01;ReadPosRankSum=-0.919;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-740N7.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478302    GT:AD:DP:GQ:PL    0/1:21,23:44:99:602,0,692
7    7034759    rs62452550    C    T    216.41    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DB;DP=15;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=50.38;MQ0=0;MQRankSum=-1.791;QD=14.43;ReadPosRankSum=0.209;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    0/1:7,8:15:99:246,0,193
7    7034785    rs73341200    T    G    388.73    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.315;DB;DP=27;Dels=0.0;FS=4.869;HRun=0;HaplotypeScore=0.0;MQ=52.18;MQ0=0;MQRankSum=-2.887;QD=14.4;ReadPosRankSum=0.218;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    0/1:13,14:27:99:419,0,381
7    7034805    rs4724905    G    C    873.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=50.8;MQ0=0;QD=25.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    1/1:0,34:34:78.19:906,78,0
7    7034807    rs6968854    A    C    382.92    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.16;DB;DP=37;Dels=0.0;FS=2.527;HRun=1;HaplotypeScore=0.0;MQ=51.02;MQ0=0;MQRankSum=-2.552;QD=10.35;ReadPosRankSum=-1.408;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    0/1:15,22:37:99:413,0,489
7    7034845    rs73676459    C    A    1152.48    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.182;DB;DP=68;Dels=0.0;FS=5.557;HRun=0;HaplotypeScore=0.5784;MQ=51.99;MQ0=0;MQRankSum=-2.914;QD=16.95;ReadPosRankSum=1.054;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1182,0,796
7    7034872    rs6948285    G    A    1471.90    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=4.721;DB;DP=82;Dels=0.0;FS=1.045;HRun=0;HaplotypeScore=0.9665;MQ=50.95;MQ0=0;MQRankSum=-3.644;QD=17.95;ReadPosRankSum=-0.336;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    0/1:31,51:82:99:1502,0,860
7    7034996    rs6463624    T    C    1059.25    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.418;DB;DP=72;Dels=0.0;FS=2.465;HRun=3;HaplotypeScore=0.0;MQ=46.51;MQ0=0;MQRankSum=-6.195;QD=14.71;ReadPosRankSum=-0.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    0/1:29,43:72:99:1089,0,892
7    7035045    rs28561890    T    C    128.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.604;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.63;MQ0=0;MQRankSum=-4.687;QD=4.27;ReadPosRankSum=-0.954;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    0/1:15,15:30:99:158,0,553
7    7035054    rs28431817    T    A    83    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.5;MQ0=0;MQRankSum=-4.171;QD=3.46;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC079804.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408084    GT:AD:DP:GQ:PL    0/1:13,11:24:99:113,0,492
7    7118900    rs28609720    C    T    476.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-397J20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497346    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:509,36,0
7    7118913    rs13245377    G    A    491.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=28.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-397J20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497346    GT:AD:DP:GQ:PL    1/1:0,17:17:39.11:525,39,0
7    7277807    rs3807862    G    A    466.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1GALT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476068    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:500,39,0
7    7283017    rs2190935    C    T    243    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.965;QD=17.36;ReadPosRankSum=1.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1GALT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402468    GT:AD:DP:GQ:PL    0/1:6,8:14:99:273,0,205
7    7398457    rs2348042    T    G    1777.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399429    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1811,135,0
7    7400239    rs7786515    A    G    257.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.3;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399429    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:290,24,0
7    7415217    rs1294651    C    T    536.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399429    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:569,42,0
7    7420613    rs1294625    T    C    345.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399429    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:379,30,0
7    7420652    rs146809174    T    A    65.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.99;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399429    GT:AD:DP:GQ:PL    0/1:3,3:6:95.96:96,0,105
7    7421019    rs1294626    C    A    235.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399429    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:268,21,0
7    7421310    rs1294627    A    G    1553.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=3.866;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399429    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1586,117,0
7    7475945    rs2286839    T    G    274.43    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.101;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.0;QD=11.43;ReadPosRankSum=1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:15,9:24:99:304,0,413
7    7480382    rs16878052    A    G    313.75    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.371;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.313;QD=9.23;ReadPosRankSum=-1.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:20,14:34:99:344,0,684
7    7483083    rs10234554    C    T    233.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=11.67;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:12,8:20:99:263,0,440
7    7483090    .    C    T    397.95    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.668;QD=18.09;ReadPosRankSum=0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:9,13:22:99:428,0,319
7    7491873    rs4720735    A    C    260.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:294,24,0
7    7491874    rs4720736    G    T    258.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:292,24,0
7    7491908    rs16878062    T    G    198.48    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.578;QD=11.03;ReadPosRankSum=2.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:10,8:18:99:228,0,321
7    7495735    rs55745506    T    C    1121.90    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=3.194;DB;DP=64;Dels=0.0;FS=2.351;HRun=2;HaplotypeScore=0.9832;MQ=59.35;MQ0=0;MQRankSum=0.525;QD=17.53;ReadPosRankSum=0.923;SNPEFF_AMINO_ACID_CHANGE=I437M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_7495675_7495743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:27,37:64:99:1152,0,739
7    7514235    rs6952195    C    G    736.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=80;Dels=0.0;FS=0.868;HRun=0;HaplotypeScore=1.8455;MQ=60.0;MQ0=0;MQRankSum=-0.894;QD=9.2;ReadPosRankSum=-0.844;SNPEFF_AMINO_ACID_CHANGE=E433D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_7514232_7514300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:48,32:80:99:766,0,1526
7    7514331    rs6965546    C    T    440.48    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.394;DB;DP=57;Dels=0.0;FS=4.874;HRun=0;HaplotypeScore=3.146;MQ=60.0;MQ0=0;MQRankSum=1.223;QD=7.73;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:37,20:57:99:470,0,1210
7    7516904    rs60977515    T    A    139.86    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=19.98;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:1,6:7:23.71:170,0,24
7    7516958    rs10226811    T    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
7    7528951    rs6463696    C    T    315.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:348,27,0
7    7545691    rs10486176    G    C    579.78    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.804;QD=15.26;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=T327S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_7545645_7545698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:20,18:38:99:610,0,614
7    7555713    rs7791808    C    T    76.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
7    7557297    rs1016028    T    C    1667.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1700,132,0
7    7571094    rs7804532    G    C    346.60    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.164;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.329;QD=12.38;ReadPosRankSum=0.282;SNPEFF_AMINO_ACID_CHANGE=A189G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_7570979_7571535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:17,11:28:99:377,0,537
7    7572215    rs6977800    G    A    112.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.09;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399419    GT:AD:DP:GQ:PL    0/1:3,4:7:99:143,0,100
7    7613039    rs61744397    C    T    1019.78    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.282;DB;DP=72;Dels=0.0;FS=3.191;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.686;QD=14.16;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=P311;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_7612067_7613400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    0/1:39,33:72:99:1050,0,1173
7    7622696    rs4720741    C    T    367.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:400,30,0
7    7627994    rs6463702    T    C    71.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461907    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
7    7628275    rs7801367    C    T    474.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:507,39,0
7    7629343    rs76124801    T    C    97.58    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=19.52;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    0/1:1,4:5:27.19:128,0,27
7    7635943    .    T    C    776.68    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;MQRankSum=0.76;QD=12.73;ReadPosRankSum=0.673;SNPEFF_AMINO_ACID_CHANGE=V751A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_7635888_7636092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    0/1:33,28:61:99:807,0,984
7    7645535    rs10276434    A    G    209.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
7    7645806    rs2286209    A    G    307.76    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=11.4;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    0/1:16,11:27:99:338,0,543
7    7646651    rs7806046    G    T    2537.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=31.32;SNPEFF_AMINO_ACID_CHANGE=S852;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_7646627_7647127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2570,187,0
7    7646687    rs4222    A    G    1881.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=T864;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_7646627_7647127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIOS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340080    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1914,150,0
7    7679885    rs3735460    G    A    908.27    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=4.316;DB;DP=52;Dels=0.0;FS=1.966;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.024;QD=17.47;ReadPosRankSum=-2.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223129    GT:AD:DP:GQ:PL    0/1:21,31:52:99:938,0,513
7    7841419    rs76376703    C    T    571.23    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=46;Dels=0.0;FS=4.121;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.389;QD=12.42;ReadPosRankSum=0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC006465.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406829    GT:AD:DP:GQ:PL    0/1:26,20:46:99:601,0,795
7    7841524    rs6463722    G    T    326.56    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.054;QD=20.41;ReadPosRankSum=1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC006465.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406829    GT:AD:DP:GQ:PL    0/1:6,10:16:99:357,0,183
7    7841561    rs2348558    C    T    227.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC006465.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406829    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:260,21,0
7    8043504    rs38013    A    G    988.39    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.148;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7648;MQ=59.68;MQ0=0;MQRankSum=-1.45;QD=13.92;ReadPosRankSum=1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLCCI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223145    GT:AD:DP:GQ:PL    0/1:32,39:71:99:1018,0,944
7    8043810    .    A    G    120.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=12.05;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC006465.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468567    GT:AD:DP:GQ:PL    0/1:5,5:10:99:150,0,178
7    8110475    rs10253861    G    A    72.09    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9905;MQ=58.05;MQ0=0;MQRankSum=-0.929;QD=6.01;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLCCI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223145    GT:AD:DP:GQ:PL    0/1:8,4:12:99:102,0,290
7    8110780    rs10486207    A    G    727.65    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5366;MQ=59.68;MQ0=0;MQRankSum=-0.101;QD=10.11;ReadPosRankSum=-0.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLCCI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414914    GT:AD:DP:GQ:PL    0/1:44,27:72:99:758,0,1330
7    8125964    rs929509    C    T    3703.61    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.994;DB;DP=250;DS;Dels=0.0;FS=0.984;HRun=0;HaplotypeScore=8.0338;MQ=59.09;MQ0=0;MQRankSum=0.47;QD=14.81;ReadPosRankSum=-0.463;SNPEFF_AMINO_ACID_CHANGE=S480;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_8125823_8128710;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLCCI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223145    GT:AD:DP:GQ:PL    0/1:115,134:250:99:3704,0,3508
7    8126194    rs12847    A    G    788.18    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.822;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.14;MQ0=0;MQRankSum=0.902;QD=14.6;ReadPosRankSum=-0.989;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLCCI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491947    GT:AD:DP:GQ:PL    0/1:29,25:54:99:818,0,962
7    8153521    rs3213702    G    A    601.67    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=3.781;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.829;QD=12.8;ReadPosRankSum=-1.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422063    GT:AD:DP:GQ:PL    0/1:24,23:47:99:632,0,627
7    8178837    rs3807844    C    T    116.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470696    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
7    8181286    rs6972885    T    C    76.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=12.76;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470696    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,102
7    8181555    rs80350640    C    CCA    303.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=47.925;IndelType=I;MQ=53.94;MQ0=0;MQRankSum=0.747;QD=27.55;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265577    GT:AD:DP:GQ:PL    1/1:4,7:11:19.58:345,20,0
7    8183347    rs11767851    C    T    152.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265577    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:185,15,0
7    8196529    rs10282493    A    T    719.84    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.758;DB;DP=63;Dels=0.0;FS=3.433;HRun=1;HaplotypeScore=1.8997;MQ=49.07;MQ0=0;MQRankSum=-2.241;QD=11.43;ReadPosRankSum=-0.986;SNPEFF_AMINO_ACID_CHANGE=Y341N;SNPEFF_CODON_CHANGE=Tac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_8196187_8196844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407906    GT:AD:DP:GQ:PL    0/1:34,29:63:99:750,0,1069
7    8196559    rs60312706    TAAAAAAAAAAAAAAAAAAA    T    2936.36    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.183;DB;DP=52;FS=2.959;HRun=25;HaplotypeScore=1090.0364;IndelType=D;MQ=43.76;MQ0=0;MQRankSum=-1.403;QD=56.47;ReadPosRankSum=3.696;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_8196187_8196844;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000407906    GT:AD:DP:GQ:PL    0/1:30,22:52:99:2975,0,279
7    8196567    .    AAAAAAAAAAAAAAAAAAG    A    3206.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.222;DP=49;FS=2.582;HRun=0;HaplotypeScore=1017.1678;IndelType=D;MQ=44.62;MQ0=0;MQRankSum=-0.311;QD=65.44;ReadPosRankSum=2.046;SNPEFF_AMINO_ACID_CHANGE=SFFFFFF322F;SNPEFF_CODON_CHANGE=tcttttttttttttttttttt/ttt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_7_8196187_8196844;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407906    GT:AD:DP:GQ:PL    1/1:34,15:49:99:3249,102,0
7    8196988    rs10224158    A    T    656.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490041    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:689,57,0
7    8196998    rs3807835    G    C    728.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490041    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:762,57,0
7    8475147    rs6949787    C    T    228.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405863    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:262,21,0
7    9766965    rs28408488    T    G    1175.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9832;MQ=44.24;MQ0=2;QD=27.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC060834.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361014    GT:AD:DP:GQ:PL    1/1:0,42:42:93.29:1208,93,0
7    9767423    rs2351197    C    G    990.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=29.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC060834.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361014    GT:AD:DP:GQ:PL    1/1:0,34:34:84.23:1024,84,0
7    9767633    rs2351198    G    C    2117.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.18;MQ0=0;QD=31.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC060834.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361014    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2151,177,0
7    9767786    rs2351201    A    C    1681.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.09;MQ0=0;QD=31.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC060834.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361014    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1715,138,0
7    9767882    rs6972703    A    G    821.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=56.65;MQ0=0;MQRankSum=-1.614;QD=28.32;ReadPosRankSum=0.179;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC060834.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361014    GT:AD:DP:GQ:PL    1/1:1,28:29:35.24:854,35,0
7    9767984    rs6972864    A    G    359.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.14;MQ0=0;QD=35.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC060834.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361014    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:392,30,0
7    10973362    rs7789764    C    T    208.23    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.91;QD=13.88;ReadPosRankSum=0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463308    GT:AD:DP:GQ:PL    0/1:8,7:15:99:238,0,283
7    11022230    rs218966    A    G    1272.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=K115R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_11021999_11022786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403050    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1306,111,0
7    11022564    rs218965    G    A    3889.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=39.69;SNPEFF_AMINO_ACID_CHANGE=A226;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_11021999_11022786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHF14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000403050    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3889,283,0
7    11062487    rs115320271    C    G    1452.21    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.564;DB;DP=91;Dels=0.0;FS=1.863;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.162;QD=15.96;ReadPosRankSum=0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403050    GT:AD:DP:GQ:PL    0/1:42,49:91:99:1482,0,1414
7    11075263    rs2353340    A    G    1775.69    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DB;DP=128;Dels=0.0;FS=12.111;HRun=0;HaplotypeScore=3.5379;MQ=59.82;MQ0=0;MQRankSum=-0.316;QD=13.87;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403050    GT:AD:DP:GQ:PL    0/1:71,57:128:99:1806,0,2303
7    11091200    rs17163925    A    G    466.65    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.543;DB;DP=44;Dels=0.0;FS=1.969;HRun=0;HaplotypeScore=0.9999;MQ=59.48;MQ0=0;MQRankSum=-0.169;QD=10.61;ReadPosRankSum=-0.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403050    GT:AD:DP:GQ:PL    0/1:27,17:44:99:497,0,918
7    11151356    rs10255688    C    T    72.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=24.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445996    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:105,9,0
7    11208989    rs28394821    C    A    904.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445996    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:938,69,0
7    11418670    rs2189352    C    A    2515.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.681;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8583;MQ=58.99;MQ0=0;MQRankSum=-1.008;QD=36.45;ReadPosRankSum=-1.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:1,68:69:99:2548,153,0
7    11418931    rs12670599    T    C    1059.80    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.429;DB;DP=76;Dels=0.0;FS=1.481;HRun=0;HaplotypeScore=0.6651;MQ=59.39;MQ0=0;MQRankSum=-0.249;QD=13.94;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:39,37:76:99:1090,0,1170
7    11419104    rs2285757    G    T    350.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:383,30,0
7    11419378    rs2107162    T    C    273.23    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=20;Dels=0.0;FS=14.211;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.684;QD=13.66;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:9,11:20:99:303,0,327
7    11441358    rs10950347    A    T    717.05    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=57;Dels=0.0;FS=8.945;HRun=0;HaplotypeScore=2.4962;MQ=57.95;MQ0=0;MQRankSum=0.384;QD=12.58;ReadPosRankSum=0.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:34,23:57:99:747,0,1001
7    11441700    rs1859225    G    T    380.96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6878;MQ=59.2;MQ0=0;MQRankSum=0.317;QD=13.14;ReadPosRankSum=-0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:15,12:29:99:411,0,529
7    11446902    rs6956916    T    G    1360.48    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.34;DB;DP=85;Dels=0.0;FS=4.354;HRun=1;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=-0.16;QD=16.01;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:40,45:85:99:1390,0,1169
7    11447159    rs6975407    G    C    1172.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1206,90,0
7    11452204    rs2301743    C    G    2285.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.62;MQ0=0;QD=37.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2319,169,0
7    11464233    rs111459061    C    T    891.09    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.977;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=60.0;MQ0=0;MQRankSum=1.439;QD=14.14;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:34,29:63:99:921,0,1174
7    11464297    rs1859226    T    C    4795.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9663;MQ=59.85;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:0,150:150:99:4795,370,0
7    11581003    rs2072139    G    A    621.67    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.23;DB;DP=49;Dels=0.0;FS=4.576;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-1.17;QD=12.69;ReadPosRankSum=0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:24,25:49:99:652,0,852
7    11581121    rs47    T    C    2987.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.686;DB;DP=96;Dels=0.0;FS=3.397;HRun=0;HaplotypeScore=4.9718;MQ=59.03;MQ0=0;MQRankSum=1.443;QD=31.12;ReadPosRankSum=0.902;SNPEFF_AMINO_ACID_CHANGE=N583D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_11581046_11581258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:1,95:96:99:3021,192,0
7    11581134    rs2074603    T    C    2873.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085;DB;DP=91;Dels=0.0;FS=3.696;HRun=1;HaplotypeScore=5.9556;MQ=58.72;MQ0=0;MQRankSum=-0.095;QD=31.57;ReadPosRankSum=1.656;SNPEFF_AMINO_ACID_CHANGE=A578;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_11581046_11581258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:1,90:91:99:2906,195,0
7    11582890    rs12699207    G    C    298.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
7    11630298    rs2074602    C    A    375.68    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.616;DB;DP=42;Dels=0.0;FS=10.357;HRun=2;HaplotypeScore=2.7623;MQ=58.33;MQ0=0;MQRankSum=0.486;QD=8.94;ReadPosRankSum=-1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:24,18:42:99:406,0,718
7    11633193    rs2354954    G    A    923.55    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.661;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.73;MQ0=0;MQRankSum=0.883;QD=13.19;ReadPosRankSum=-0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    0/1:37,33:70:99:954,0,1209
7    11675579    rs2526103    A    G    453.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480061    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:486,36,0
7    11871469    .    AGCAGCGGCAGCG    A    760.86    PASS    AC=2;AF=1.00;AN=2;DP=10;FS=0.0;HRun=0;HaplotypeScore=122.1422;IndelType=D;MQ=43.16;MQ0=0;QD=76.09;SNPEFF_AMINO_ACID_CHANGE=PLPLL31L;SNPEFF_CODON_CHANGE=ccgctgccgctgctc/ctc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_7_11871383_11871824;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262042    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:803,27,0
7    12257938    rs6415232    A    G    88.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442107    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
7    12263725    rs17165746    T    A    1161.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1195,90,0
7    12263799    rs11509137    T    C    883.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:0,64:64:99:917,111,0
7    12263800    rs11509153    G    A    879.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:0,64:64:99:912,111,0
7    12264151    rs3800845    G    C    122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444443    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
7    12264220    rs3800844    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444443    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    12269046    rs60699002    C    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
7    12269260    rs3839691    A    ATGTT    2999.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=116.2129;IndelType=I;MQ=53.02;MQ0=0;QD=78.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:1,36:38:99:3041,111,0
7    12269417    rs3173615    C    G    2030.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=55.77;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=T185S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_12269305_12269445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2064,156,0
7    12269804    rs12699333    C    T    133.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
7    12269817    rs12668625    G    A    169.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
7    12270519    rs3815535    G    A    214.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.04;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396667    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
7    12270565    rs3214372    A    AT    588.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=87.3167;IndelType=I;MQ=61.38;MQ0=0;QD=39.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420833    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:631,45,0
7    12270625    rs2302635    G    A    871.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.35;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420833    GT:AD:DP:GQ:PL    1/1:0,27:27:75.21:905,75,0
7    12270770    rs2302634    T    A    1408.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.46;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420833    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1442,108,0
7    12270791    rs73677558    T    C    1150.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420833    GT:AD:DP:GQ:PL    1/1:0,37:37:90.28:1183,90,0
7    12270815    rs2302633    C    T    688.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420833    GT:AD:DP:GQ:PL    1/1:0,22:23:54.18:722,54,0
7    12270900    rs16877361    C    T    277.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420833    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:310,24,0
7    12271452    rs3800842    A    G    1061.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420833    GT:AD:DP:GQ:PL    1/1:0,36:36:87.25:1095,87,0
7    12395813    rs2119141    T    C    1207.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.58;SNPEFF_AMINO_ACID_CHANGE=Q1223;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_12395737_12395956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:0,33:33:93.29:1240,93,0
7    12396040    rs4719307    A    G    160.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:193,15,0
7    12400837    rs2053380    G    A    1338.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=37.19;SNPEFF_AMINO_ACID_CHANGE=T1032M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_12400773_12400877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1372,102,0
7    12406826    rs1371608    G    A    176.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
7    12406989    rs6460939    C    G    868.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_AMINO_ACID_CHANGE=K418N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_12406983_12407119;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536307    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:902,66,0
7    12410112    rs963323    G    A    2579.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=S607F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_12409171_12410135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2613,196,0
7    12417407    rs7793993    C    T    1614.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.48;MQ0=0;QD=36.69;SNPEFF_AMINO_ACID_CHANGE=G340D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_12417402_12417546;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1647,120,0
7    12419108    rs6967241    A    T    292.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.66;MQ0=0;QD=29.25;SNPEFF_AMINO_ACID_CHANGE=F292I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_12419103_12419192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:325,24,0
7    12420092    rs1025787    G    C    4795.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.396;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.811;MQ=59.02;MQ0=0;MQRankSum=-0.575;QD=34.75;ReadPosRankSum=1.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:3,135:138:99:4796,291,0
7    12420447    rs6959370    T    G    319.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:352,27,0
7    12420517    rs6460941    T    A    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275358    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
7    12617552    rs10248067    C    G    412.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297029    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:445,33,0
7    12644033    rs7798406    G    A    567.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297029    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:601,45,0
7    12644334    rs849778    G    T    956.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297029    GT:AD:DP:GQ:PL    1/1:1,27:28:72.24:989,72,0
7    12644348    rs78612532    G    GGT    720.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=133.8363;IndelType=I;MQ=60.98;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297029    GT:AD:DP:GQ:PL    1/1:6,16:22:48.16:763,48,0
7    12644502    rs849779    T    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297029    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    12665209    rs2190716    T    C    126.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486980    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
7    12669016    rs2529785    T    C    462.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.9958;MQ=55.8;MQ0=0;QD=27.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473722    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:495,39,0
7    12669023    rs10655155    C    CCA    552.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=77.7203;IndelType=I;MQ=54.44;MQ0=0;QD=42.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473722    GT:AD:DP:GQ:PL    1/1:2,11:13:33.11:595,33,0
7    12684340    rs2691810    C    T    3088.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.1968;MQ=59.36;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297029    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3122,244,0
7    12727826    rs2280633    G    C    2828.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=56.92;MQ0=0;QD=34.92;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_12727791_12728804;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396662    GT:AD:DP:GQ:PL    1/1:0,80:81:99:2862,211,0
7    13978645    rs3801098    C    T    581.66    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=53;Dels=0.0;FS=2.781;HRun=0;HaplotypeScore=2.9275;MQ=59.65;MQ0=0;MQRankSum=-0.665;QD=10.97;ReadPosRankSum=1.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431887    GT:AD:DP:GQ:PL    0/1:34,19:53:99:612,0,1189
7    13978648    rs3801099    T    A    592.34    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.439;DB;DP=56;Dels=0.0;FS=2.847;HRun=1;HaplotypeScore=2.9275;MQ=59.67;MQ0=0;MQRankSum=-1.048;QD=10.58;ReadPosRankSum=0.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431887    GT:AD:DP:GQ:PL    0/1:35,21:56:99:622,0,1231
7    13978809    rs9639168    T    C    1651.51    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.795;DB;DP=138;Dels=0.0;FS=0.674;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=2.455;QD=11.97;ReadPosRankSum=-1.334;SNPEFF_AMINO_ACID_CHANGE=S100G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_13978742_13978871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405192    GT:AD:DP:GQ:PL    0/1:73,65:138:99:1682,0,2301
7    14017007    rs2066977    C    T    170.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242066    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
7    14017008    rs2066976    C    G    169.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242066    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
7    14017126    rs17167717    T    TA    128.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=8;HaplotypeScore=9.4117;IndelType=I;MQ=62.13;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242066    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:171,15,0
7    14025640    rs3801110    G    A    450.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433547    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:483,36,0
7    14025727    rs3823704    C    T    1281.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433547    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1315,99,0
7    14025766    rs10215655    T    A    1641.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_AMINO_ACID_CHANGE=P12;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_14025741_14026139;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399357    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1675,120,0
7    14026357    rs3213661    A    G    1588.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433547    GT:AD:DP:GQ:PL    1/1:0,46:47:99:1622,120,0
7    14026438    rs3216977    TA    T    189.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=8;HaplotypeScore=46.9998;IndelType=D;MQ=60.0;MQ0=0;QD=15.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433547    GT:AD:DP:GQ:PL    1/1:4,8:12:24.03:232,24,0
7    14027557    rs7789916    G    A    318.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433547    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:352,27,0
7    14027867    rs59844225    G    GCA    1289.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.89;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=122.6692;IndelType=I;MQ=60.28;MQ0=0;MQRankSum=0.121;QD=28.66;ReadPosRankSum=-0.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485475    GT:AD:DP:GQ:PL    1/1:15,30:44:19.97:1332,20,0
7    14027991    rs6977237    T    C    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485475    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
7    14028189    rs11364123    CA    C    401.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=11;HaplotypeScore=174.0013;IndelType=D;MQ=37.71;MQ0=0;QD=21.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485475    GT:AD:DP:GQ:PL    1/1:1,18:19:53.94:443,54,0
7    14028220    rs34468165    G    GA    898.05    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.458;DB;DP=62;FS=0.0;HRun=14;HaplotypeScore=732.2048;IndelType=I;MQ=33.94;MQ0=0;MQRankSum=-1.836;QD=14.48;ReadPosRankSum=1.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485475    GT:AD:DP:GQ:PL    0/1:28,30:62:0.45:935,0,0
7    14028245    rs11460974    G    GA    1931.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.293;DB;DP=86;FS=0.0;HRun=10;HaplotypeScore=773.7216;IndelType=I;MQ=41.95;MQ0=0;MQRankSum=0.22;QD=22.46;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485475    GT:AD:DP:GQ:PL    1/1:25,60:86:99:1974,202,0
7    14028707    rs140879246    TA    T    796.86    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=4.693;DB;DP=56;FS=2.62;HRun=1;HaplotypeScore=142.4826;IndelType=D;MQ=60.19;MQ0=0;MQRankSum=0.229;QD=14.23;ReadPosRankSum=-0.195;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485475    GT:AD:DP:GQ:PL    0/1:32,24:56:99:836,0,1281
7    14216609    rs2286248    G    A    496.17    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=40;Dels=0.0;FS=3.468;HRun=1;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=12.4;ReadPosRankSum=0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    0/1:22,18:40:99:526,0,801
7    14517977    rs3823843    G    A    74.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=10.59;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,147
7    14622510    rs17595234    G    A    118.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.74;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:149,0,28
7    14646986    rs17168299    C    G    540.74    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.917;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.012;QD=12.58;ReadPosRankSum=-1.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    0/1:24,19:43:99:571,0,869
7    14647046    rs62445596    T    C    1146.09    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=84;Dels=0.0;FS=1.98;HRun=2;HaplotypeScore=1.988;MQ=59.17;MQ0=0;MQRankSum=-0.443;QD=13.64;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    0/1:41,43:84:99:1176,0,1293
7    14647192    rs62445597    T    G    456.81    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.51;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.613;QD=14.74;ReadPosRankSum=-0.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    0/1:16,15:31:99:487,0,564
7    14653208    rs2462563    A    G    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9949;MQ=60.0;MQ0=0;QD=13.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:84,6,0
7    14660762    rs17666806    T    C    133.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477401    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
7    14737568    rs1464825    C    G    32.23    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8888;MQ=65.19;MQ0=0;MQRankSum=-0.956;QD=4.03;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    0/1:5,3:8:62.22:62,0,189
7    14737622    rs67176672    AAAAG    A    1093.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=135.9636;IndelType=D;MQ=62.04;MQ0=0;QD=47.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    1/1:0,23:23:69.24:1136,69,0
7    14741534    rs35307487    AT    A    419.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=26.6691;IndelType=D;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:462,33,0
7    14758273    rs1997040    C    T    3301.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=R113;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_14758167_14758310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407950    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3302,247,0
7    14775821    rs139628753    TG    T    971.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=2;HaplotypeScore=300.8324;IndelType=D;MQ=60.21;MQ0=0;QD=21.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    1/1:7,39:46:99:1013,120,0
7    14775823    rs56288033    G    C    120.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.021;DB;DP=43;Dels=0.02;FS=2.399;HRun=0;HaplotypeScore=3.9297;MQ=60.22;MQ0=0;MQRankSum=0.272;QD=2.75;ReadPosRankSum=-2.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258767    GT:AD:DP:GQ:PL    1/1:39,4:43:12.04:153,12,0
7    15346196    rs111254203    T    TA    645.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.983;DB;DP=34;FS=0.0;HRun=12;HaplotypeScore=97.3084;IndelType=I;MQ=59.28;MQ0=0;MQRankSum=1.007;QD=18.99;ReadPosRankSum=-0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342526    GT:AD:DP:GQ:PL    1/1:6,27:34:17.56:688,18,0
7    15424935    rs4256501    A    C    111.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.64;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342526    GT:AD:DP:GQ:PL    0/1:2,4:6:62.59:142,0,63
7    15426956    rs4541808    G    A    530.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.175;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.611;QD=14.74;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342526    GT:AD:DP:GQ:PL    0/1:18,18:36:99:561,0,468
7    15427275    rs34660243    C    CAT    759.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=37.7537;IndelType=I;MQ=62.28;MQ0=0;QD=54.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342526    GT:AD:DP:GQ:PL    1/1:0,13:14:42.14:801,42,0
7    15430259    rs6942879    A    C    1201.22    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=2.247;DB;DP=83;Dels=0.0;FS=11.366;HRun=0;HaplotypeScore=1.5983;MQ=60.0;MQ0=0;MQRankSum=1.53;QD=14.47;ReadPosRankSum=-1.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498264    GT:AD:DP:GQ:PL    0/1:47,36:83:99:1231,0,1557
7    15458033    rs4469360    C    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342526    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    15601409    .    T    TAA    1445.33    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.117;DP=71;FS=10.738;HRun=4;HaplotypeScore=191.664;IndelType=I;MQ=59.5;MQ0=1;MQRankSum=0.977;QD=20.07;ReadPosRankSum=-1.296;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_15601345_15601640;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGMO;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000342526    GT:AD:DP:GQ:PL    0/1:39,33:71:99:1484,0,1223
7    15666230    rs3779406    C    T    133.05    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.219;QD=14.78;ReadPosRankSum=-1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262041    GT:AD:DP:GQ:PL    0/1:4,5:9:99:163,0,138
7    16131260    rs1528137    C    T    2451.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006035.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444738    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2485,193,0
7    16131286    rs16878689    G    C    1610.46    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=3.372;DB;DP=92;Dels=0.0;FS=15.392;HRun=0;HaplotypeScore=0.9983;MQ=59.29;MQ0=0;MQRankSum=-0.727;QD=17.51;ReadPosRankSum=-1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006035.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444738    GT:AD:DP:GQ:PL    0/1:36,56:92:99:1640,0,1078
7    16255602    rs4389828    A    T    1350.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399310    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1383,105,0
7    16298434    rs1295153    T    C    140.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=14.03;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399310    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,171
7    16298438    rs7799150    T    G    157.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=13.16;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399310    GT:AD:DP:GQ:PL    0/1:6,6:12:99:188,0,205
7    16298766    rs5882563    A    AT    220.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=17.5467;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=0.248;QD=24.45;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399310    GT:AD:DP:GQ:PL    0/1:3,6:9:98.86:259,0,99
7    16503932    rs67149353    C    G    324.48    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=27;Dels=0.0;FS=3.488;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.561;QD=12.02;ReadPosRankSum=1.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOSTDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307068    GT:AD:DP:GQ:PL    0/1:15,12:27:99:354,0,451
7    16504178    rs4506094    A    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOSTDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307068    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    16505054    rs111391406    GA    G    350.60    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=3.622;DB;DP=36;FS=5.997;HRun=11;HaplotypeScore=108.7705;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=-0.892;QD=9.74;ReadPosRankSum=1.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOSTDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307068    GT:AD:DP:GQ:PL    0/1:15,21:36:99:390,0,343
7    16505341    rs6945425    T    C    642.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_16505089_16505474;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOSTDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307068    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:675,54,0
7    16571973    rs1404173    A    G    115.42    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=19.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC005014.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401542    GT:AD:DP:GQ:PL    0/1:1,5:6:25.60:145,0,26
7    16571976    rs1404172    C    G    125.77    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=20.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC005014.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401542    GT:AD:DP:GQ:PL    0/1:1,5:6:23.71:156,0,24
7    16572051    rs1404171    C    T    356.88    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.05;QD=20.99;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC005014.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401542    GT:AD:DP:GQ:PL    0/1:6,11:17:99:387,0,201
7    16577376    rs6961390    G    A    1551.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC005014.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382124    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1584,117,0
7    16598655    rs6979816    G    A    897.98    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.603;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=1.062;QD=17.61;ReadPosRankSum=0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC005014.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401542    GT:AD:DP:GQ:PL    0/1:21,30:51:99:928,0,626
7    16649491    rs1829995    T    A    561.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306999    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:595,45,0
7    16650427    rs572570    C    G    756.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=39.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306999    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:790,57,0
7    16655619    rs62443197    T    C    183.09    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.633;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.612;QD=9.64;ReadPosRankSum=-1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306999    GT:AD:DP:GQ:PL    0/1:10,9:19:99:213,0,346
7    16664385    rs17382576    C    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421746    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
7    16664511    rs34435348    A    AC    359.78    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.732;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=40.384;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=21.16;ReadPosRankSum=0.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421746    GT:AD:DP:GQ:PL    0/1:7,10:17:99:399,0,215
7    16666741    rs11532682    T    G    342.96    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.74;DB;DP=34;Dels=0.0;FS=3.093;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.069;QD=10.09;ReadPosRankSum=-1.318;SNPEFF_AMINO_ACID_CHANGE=L65;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_16666665_16666803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306999    GT:AD:DP:GQ:PL    0/1:19,15:34:99:373,0,569
7    16666759    rs11531477    G    C    383.08    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.066;QD=11.97;ReadPosRankSum=0.022;SNPEFF_AMINO_ACID_CHANGE=L59;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_16666665_16666803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306999    GT:AD:DP:GQ:PL    0/1:18,14:32:99:413,0,539
7    16666952    rs11533917    T    G    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306999    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
7    16675907    rs4721522    G    A    80.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKMY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306999    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
7    16713933    rs11465103    A    AT    181.48    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=30.4176;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=12.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258761    GT:AD:DP:GQ:PL    0/1:7,8:15:99:221,0,137
7    16736345    rs17683330    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446596    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
7    16736479    rs7796792    C    G    1578.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446596    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1611,129,0
7    16736890    rs1841216    T    G    116.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432311    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
7    16738006    rs12539223    T    C    103.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432311    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:136,12,0
7    16745589    rs1149510    T    C    659.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415365    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:693,51,0
7    16793504    rs6975847    A    G    31.80    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=53.95;MQ0=0;MQRankSum=0.322;QD=3.98;ReadPosRankSum=0.322;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_16793160_16793655;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262067    GT:AD:DP:GQ:PL    0/1:5,3:8:61.79:62,0,173
7    16793779    rs11405941    G    GC    238.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=20.3853;IndelType=I;MQ=61.78;MQ0=0;QD=39.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262067    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:281,18,0
7    16815786    rs2290836    C    G    398.72    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=22;Dels=0.0;FS=2.643;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=18.12;ReadPosRankSum=-1.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262067    GT:AD:DP:GQ:PL    0/1:9,13:22:99:429,0,313
7    16816000    rs2290837    T    C    291.98    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=44;Dels=0.0;FS=1.298;HRun=0;HaplotypeScore=1.81;MQ=59.48;MQ0=0;MQRankSum=1.303;QD=6.64;ReadPosRankSum=1.051;SNPEFF_AMINO_ACID_CHANGE=F76;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_16815836_16816003;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262067    GT:AD:DP:GQ:PL    0/1:31,13:44:99:322,0,767
7    16818476    rs13232235    T    G    30.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262067    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:60,0,32
7    16818799    rs6461276    A    G    113.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466195    GT:AD:DP:GQ:PL    0/1:2,4:6:63.71:143,0,64
7    16823095    rs11491    G    A    2994.34    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=2.867;DB;DP=222;Dels=0.0;FS=1.637;HRun=2;HaplotypeScore=2.4993;MQ=60.0;MQ0=0;MQRankSum=2.48;QD=13.49;ReadPosRankSum=0.522;SNPEFF_AMINO_ACID_CHANGE=A198;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_16823042_16824161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262067    GT:AD:DP:GQ:PL    0/1:110,112:222:99:3024,0,3102
7    16834444    rs2272246    C    T    310.21    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.149;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9662;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=7.95;ReadPosRankSum=-0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412973    GT:AD:DP:GQ:PL    0/1:23,16:39:99:340,0,843
7    16834551    rs4719480    C    A    994.93    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=88;Dels=0.0;FS=4.279;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.008;QD=11.31;ReadPosRankSum=0.068;SNPEFF_AMINO_ACID_CHANGE=D163Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_16834298_16834643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000401412    GT:AD:DP:GQ:PL    0/1:51,37:88:99:1025,0,1512
7    16834597    rs6842    A    G    1260.44    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.737;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.119;QD=12.12;ReadPosRankSum=0.915;SNPEFF_AMINO_ACID_CHANGE=N147;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_16834298_16834643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401412    GT:AD:DP:GQ:PL    0/1:61,43:104:99:1290,0,1884
7    16837404    rs819010    C    T    32.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.42;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468419    GT:AD:DP:GQ:PL    0/1:4,2:6:62.50:62,0,117
7    16899197    rs11798    C    T    450.54    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.485;DB;DP=26;Dels=0.0;FS=3.674;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.024;QD=17.33;ReadPosRankSum=0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402239    GT:AD:DP:GQ:PL    0/1:9,17:26:99:481,0,275
7    16899376    rs4719484    G    A    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402239    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
7    16901185    rs4236289    C    T    636.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310398    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:669,51,0
7    16913394    rs10249749    A    G    899.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310398    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:933,72,0
7    16913520    rs4472406    G    A    589.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310398    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:622,45,0
7    16913557    rs2892833    A    T    296.72    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.355;QD=19.78;ReadPosRankSum=1.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310398    GT:AD:DP:GQ:PL    0/1:6,9:15:99:327,0,203
7    16913617    rs4389824    A    G    624.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310398    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:657,48,0
7    16917934    rs4376413    T    C    76.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310398    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
7    16917989    rs2286212    A    T    68    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=9.71;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310398    GT:AD:DP:GQ:PL    0/1:1,6:7:29.19:98,0,29
7    17373771    rs2074113    G    T    268.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.147;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=11.18;ReadPosRankSum=1.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475440    GT:AD:DP:GQ:PL    0/1:15,9:24:99:298,0,523
7    17379110    rs2066853    G    A    884.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.325;DB;DP=62;Dels=0.0;FS=0.984;HRun=1;HaplotypeScore=1.4942;MQ=58.95;MQ0=0;MQRankSum=1.522;QD=14.27;ReadPosRankSum=-0.844;SNPEFF_AMINO_ACID_CHANGE=R554K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_17378610_17379852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242057    GT:AD:DP:GQ:PL    0/1:31,31:62:99:915,0,1041
7    17874271    rs4721660    T    C    77.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.5;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242044    GT:AD:DP:GQ:PL    0/1:2,3:5:64.27:107,0,64
7    17913083    rs5882635    A    AC    272.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=16.489;IndelType=I;MQ=63.02;MQ0=0;QD=39.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242044    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:315,21,0
7    17979793    rs3800963    G    A    77.78    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.45;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242044    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:108,0,30
7    18066569    rs3800962    C    A    2772.01    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.454;DB;DP=203;Dels=0.0;FS=1.801;HRun=0;HaplotypeScore=1.5449;MQ=59.77;MQ0=0;MQRankSum=-0.805;QD=13.66;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=E279D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_18066405_18067486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPS1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506618    GT:AD:DP:GQ:PL    0/1:106,97:203:99:2802,0,3451
7    18067479    rs35708479    ACT    A    559.73    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=4.632;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=125.0774;IndelType=D;MQ=59.69;MQ0=0;MQRankSum=1.417;QD=14.35;ReadPosRankSum=-1.13;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_18066405_18067486;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPS1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506618    GT:AD:DP:GQ:PL    0/1:23,16:39:99:599,0,993
7    18069349    rs12673527    G    T    667.75    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.863;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.614;QD=16.29;ReadPosRankSum=0.353;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPS1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506618    GT:AD:DP:GQ:PL    0/1:19,22:41:99:698,0,662
7    18336957    rs2791299    G    A    65.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.05;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262069    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:95,0,66
7    18624800    rs2073974    T    C    3755.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.893;MQ=59.79;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262069    GT:AD:DP:GQ:PL    1/1:0,109:110:99:3755,280,0
7    18630208    rs1726610    A    C    321.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413509    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:355,27,0
7    18631098    rs34162765    ATG    A    336.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=80.9334;IndelType=D;MQ=54.84;MQ0=1;QD=19.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413509    GT:AD:DP:GQ:PL    1/1:4,12:15:35.93:379,36,0
7    18633901    rs3213616    A    G    202.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413380    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
7    18669314    rs2188321    G    C    93.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262069    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    18674435    rs2285431    T    C    2050.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262069    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2084,159,0
7    18914251    rs2286213    C    G    1117.09    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.049;DB;DP=85;Dels=0.0;FS=6.367;HRun=2;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=-0.463;QD=13.14;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341009    GT:AD:DP:GQ:PL    0/1:47,38:85:99:1147,0,1471
7    18975189    rs2240419    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341009    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    18993870    rs2389998    C    T    590.23    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.607;DB;DP=42;Dels=0.0;FS=13.082;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.189;QD=14.05;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=F1010;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_18993769_18993939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432645    GT:AD:DP:GQ:PL    0/1:22,20:42:99:620,0,742
7    19015263    rs2189741    T    G    73.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.28;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401921    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,107
7    19769138    rs185614283    A    G    184.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=18.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405764    GT:AD:DP:GQ:PL    0/1:4,6:10:99:214,0,138
7    20180425    rs10555255    TACAC    T    209.98    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=111.3166;IndelType=D;MQ=58.78;MQ0=0;MQRankSum=1.658;QD=11.05;ReadPosRankSum=-2.462;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332878    GT:AD:DP:GQ:PL    0/1:12,5:19:99:249,0,549
7    20180507    rs55989776    G    GAC    1209.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.487;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=153.4627;IndelType=I;MQ=61.77;MQ0=0;MQRankSum=0.453;QD=30.24;ReadPosRankSum=-0.905;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332878    GT:AD:DP:GQ:PL    0/1:10,29:40:12.29:1249,0,12
7    20180673    rs141024206    T    A    827.37    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.727;DB;DP=66;Dels=0.0;FS=8.743;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.545;QD=12.54;ReadPosRankSum=0.25;SNPEFF_AMINO_ACID_CHANGE=N819Y;SNPEFF_CODON_CHANGE=Aac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_20180248_20180781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332878    GT:AD:DP:GQ:PL    0/1:34,32:66:99:857,0,1116
7    20180717    rs3735615    C    G    1580.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=36.76;SNPEFF_AMINO_ACID_CHANGE=R804T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_20180248_20180781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332878    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1614,120,0
7    20198440    rs975263    G    A    1060.63    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.335;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9653;MQ=59.65;MQ0=0;MQRankSum=1.543;QD=16.07;ReadPosRankSum=0.992;SNPEFF_AMINO_ACID_CHANGE=S515L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_20197827_20199868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332878    GT:AD:DP:GQ:PL    0/1:31,34:66:99:1091,0,980
7    20198700    .    G    T    159.62    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.022;DP=39;Dels=0.0;FS=53.666;HRun=2;HaplotypeScore=8.4689;MQ=53.78;MQ0=0;MQRankSum=-1.086;QD=4.09;ReadPosRankSum=-0.646;SNPEFF_AMINO_ACID_CHANGE=D428E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_20197827_20199868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332878    GT:AD:DP:GQ:PL    0/1:21,18:39:99:190,0,626
7    20371395    rs206197    T    C    434.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=25.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537992    GT:AD:DP:GQ:PL    1/1:0,17:17:36.11:468,36,0
7    20403353    rs35420999    AT    A    210.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=11;HaplotypeScore=47.5938;IndelType=D;MQ=59.18;MQ0=0;QD=14.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222573    GT:AD:DP:GQ:PL    1/1:3,11:15:31.98:252,32,0
7    20420151    rs4721902    T    C    435.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222573    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:468,36,0
7    20430900    rs10227623    C    T    290.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222573    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
7    20430960    rs3779506    T    C    531.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222573    GT:AD:DP:GQ:PL    1/1:0,16:16:45.10:564,45,0
7    20438743    rs6945675    C    G    257.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478974    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
7    20444532    rs2074424    C    T    478.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222573    GT:AD:DP:GQ:PL    1/1:0,14:14:42.10:512,42,0
7    20706645    rs12535128    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
7    20739774    rs10717453    AT    A    150.26    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=21;FS=0.0;HRun=10;HaplotypeScore=47.3444;IndelType=D;MQ=61.02;MQ0=0;MQRankSum=-0.059;QD=7.16;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    0/1:12,9:21:99:189,0,154
7    20762543    rs6948504    T    A    482.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,19:19:48.12:516,48,0
7    20762609    rs73085689    T    C    1283.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1316,102,0
7    20762646    rs62453384    G    T    1993.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=G365V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_20762639_20762842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2026,156,0
7    20762937    rs62453385    T    C    118.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:151,12,0
7    20767781    rs11334703    TA    T    242.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=13;HaplotypeScore=70.5672;IndelType=D;MQ=57.59;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,13:13:38.78:284,39,0
7    20767815    rs4721940    C    T    746.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=57.99;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:779,60,0
7    20778646    rs6461515    G    A    1064.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9655;MQ=59.32;MQ0=0;QD=31.32;SNPEFF_AMINO_ACID_CHANGE=E525K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_20778606_20778762;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1098,84,0
7    20778773    rs6461516    C    G    463.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:497,36,0
7    20782474    rs12669866    T    C    275.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.824;DB;DP=22;Dels=0.0;FS=1.897;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.22;QD=12.5;ReadPosRankSum=1.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    0/1:12,10:22:99:305,0,357
7    20784677    rs10280418    C    T    89.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258738    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    20824614    rs34908430    C    T    105.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.21;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=S232;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_20821903_20824947;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297210    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,124
7    20826452    rs34863300    T    G    1943.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5424;MQ=59.09;MQ0=0;MQRankSum=-0.794;QD=15.3;ReadPosRankSum=0.513;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_20826397_20826505;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297210    GT:AD:DP:GQ:PL    0/1:54,72:127:99:1973,0,1768
7    21468579    rs39303    G    A    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=10.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440636    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,112
7    21468869    rs34149912    TCC    T    489.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=10;HaplotypeScore=56.9328;IndelType=D;MQ=61.26;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440636    GT:AD:DP:GQ:PL    1/1:1,16:17:48.13:532,48,0
7    21470536    rs40245    A    T    441.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440636    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:475,36,0
7    21516627    rs3214203    AT    A    51.18    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=33.9859;IndelType=D;MQ=58.05;MQ0=0;MQRankSum=1.186;QD=4.26;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222584    GT:AD:DP:GQ:PL    0/1:7,5:12:90.21:90,0,146
7    21551070    rs3735440    G    A    126.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.67;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222584    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
7    21582917    rs2285942    C    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=T18;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21582833_21583214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
7    21582963    rs2285943    G    T    47.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.96;SNPEFF_AMINO_ACID_CHANGE=E34*;SNPEFF_CODON_CHANGE=Gag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_7_21582833_21583214;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:79,6,0
7    21582964    rs2285944    A    T    47.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.96;SNPEFF_AMINO_ACID_CHANGE=E34V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21582833_21583214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:79,6,0
7    21584820    rs7781669    A    G    871.41    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=4.053;DB;DP=60;Dels=0.0;FS=3.007;HRun=1;HaplotypeScore=1.9336;MQ=58.45;MQ0=0;MQRankSum=-0.104;QD=14.52;ReadPosRankSum=0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:29,31:60:99:901,0,896
7    21598254    rs68042167    T    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    21598312    rs5882813    G    GGAT    434.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=20.7633;IndelType=I;MQ=49.17;MQ0=0;QD=62.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:476,21,0
7    21598753    rs56130071    G    C    192.37    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=12.02;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:9,7:16:99:222,0,322
7    21599233    rs10950854    C    T    2060.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;QD=34.35;SNPEFF_AMINO_ACID_CHANGE=N235;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21599221_21599410;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2094,153,0
7    21600902    rs4374884    A    G    335.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:368,27,0
7    21603601    rs10950856    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483691    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    21603666    rs72655979    A    G    184.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.78;ReadPosRankSum=1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483691    GT:AD:DP:GQ:PL    0/1:5,6:11:99:215,0,162
7    21603678    rs5008148    A    G    405.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=33.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483691    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:439,36,0
7    21603886    rs4392792    A    G    942.73    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.088;DB;DP=72;Dels=0.0;FS=6.178;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.416;QD=13.09;ReadPosRankSum=1.193;SNPEFF_AMINO_ACID_CHANGE=P355;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21603804_21604015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:37,35:72:99:973,0,1183
7    21604072    rs74430471    C    T    440.06    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=4.392;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.218;QD=16.3;ReadPosRankSum=1.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483691    GT:AD:DP:GQ:PL    0/1:13,14:27:99:470,0,380
7    21609625    rs56832849    C    T    800.43    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.612;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.294;QD=14.82;ReadPosRankSum=0.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:28,26:54:99:830,0,908
7    21611399    rs66476925    G    C    977.56    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.198;DB;DP=91;Dels=0.0;FS=0.879;HRun=0;HaplotypeScore=1.7234;MQ=59.75;MQ0=0;MQRankSum=1.401;QD=10.74;ReadPosRankSum=-1.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496218    GT:AD:DP:GQ:PL    0/1:53,38:91:99:1008,0,1695
7    21611619    rs7804044    G    T    812.54    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.746;DB;DP=60;Dels=0.0;FS=1.202;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.074;QD=13.54;ReadPosRankSum=1.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496218    GT:AD:DP:GQ:PL    0/1:31,29:60:99:843,0,1019
7    21627909    rs3810897    A    G    1332.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1366,102,0
7    21628237    rs6963535    C    T    5595.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=F652;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21628130_21628254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,154:154:99:5595,415,0
7    21628685    rs6967971    C    G    148.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:181,15,0
7    21630982    rs4615458    A    G    2084.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6826;MQ=58.26;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=A818;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21630803_21631195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2117,169,0
7    21639818    rs6461586    T    C    970.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,31:31:87.20:1003,87,0
7    21640405    rs10224537    A    G    6795.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7206;MQ=59.77;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=T1038A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21640294_21640548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,199:200:99:6795,533,0
7    21641218    rs3827657    G    A    2501.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=Q1210;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21641014_21641236;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2534,196,0
7    21646233    .    C    CT    293.52    PASS    AB=0.799;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DP=127;FS=12.284;HRun=20;HaplotypeScore=1181.5606;IndelType=I;MQ=45.22;MQ0=0;MQRankSum=-0.55;QD=2.31;ReadPosRankSum=-1.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:89,23:127:1.28:331,0,1
7    21654602    rs7779983    C    T    1045.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1078,81,0
7    21657130    rs12539987    C    G    863.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:896,66,0
7    21658537    rs17144803    C    T    506.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:540,42,0
7    21658855    rs57208694    A    G    2145.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5767;MQ=59.22;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2179,169,0
7    21658964    rs68184450    C    T    599.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,18:18:54.12:632,54,0
7    21659554    rs112373177    A    ATTAAT    13149.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;FS=0.0;HRun=0;HaplotypeScore=581.2204;IndelType=I;MQ=57.11;MQ0=0;QD=85.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:10,134:154:99:13149,446,0
7    21659645    rs56029521    T    C    5642.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5757;MQ=57.44;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=I1488;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21659574_21659696;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,173:173:99:5642,451,0
7    21695280    rs4385377    G    C    139.52    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=17.44;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:3,5:8:86.61:170,0,87
7    21695649    rs4385378    G    A    955.97    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.503;DB;DP=91;Dels=0.0;FS=2.162;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=0.469;QD=10.51;ReadPosRankSum=-0.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:51,40:91:99:986,0,1666
7    21698319    rs67673671    G    T    230.05    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.003;QD=17.7;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:4,9:13:99:260,0,128
7    21698780    rs9639389    A    C    455.11    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.32;QD=17.5;ReadPosRankSum=-2.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:8,17:26:99:485,0,267
7    21723573    rs59447021    A    T    1478.04    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=111;Dels=0.0;FS=6.328;HRun=0;HaplotypeScore=0.6651;MQ=59.83;MQ0=0;MQRankSum=-1.07;QD=13.32;ReadPosRankSum=-1.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:55,56:111:99:1508,0,1902
7    21727186    rs62445282    A    G    529.60    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=45;Dels=0.0;FS=1.49;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.284;QD=11.77;ReadPosRankSum=1.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:25,19:45:99:560,0,764
7    21727271    rs62445283    C    T    142.07    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=11.84;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:7,5:12:99:172,0,199
7    21730647    rs7790948    T    G    355.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.116;QD=17.78;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:8,12:20:99:386,0,243
7    21737973    rs56376598    G    C    276.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=18.46;ReadPosRankSum=-0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:5,10:15:99:307,0,167
7    21744039    rs2965401    T    G    494.86    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.845;DB;DP=48;Dels=0.0;FS=5.736;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.403;QD=10.31;ReadPosRankSum=1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465129    GT:AD:DP:GQ:PL    0/1:26,22:48:99:525,0,833
7    21744318    rs112385292    TA    T    244.30    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=17;FS=0.0;HRun=3;HaplotypeScore=43.326;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=14.37;ReadPosRankSum=-1.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465129    GT:AD:DP:GQ:PL    0/1:8,9:17:99:283,0,295
7    21745061    rs1023542    A    G    508.73    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.73;DB;DP=46;Dels=0.0;FS=5.464;HRun=1;HaplotypeScore=0.6651;MQ=59.5;MQ0=0;MQRankSum=0.863;QD=11.06;ReadPosRankSum=-1.616;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465129    GT:AD:DP:GQ:PL    0/1:22,24:46:99:539,0,639
7    21747630    rs2074759    A    G    163.41    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=14.86;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465129    GT:AD:DP:GQ:PL    0/1:5,6:11:99:193,0,173
7    21757287    rs2965409    T    C    358.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.964;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=17.91;ReadPosRankSum=0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:8,12:20:99:388,0,275
7    21757636    rs2074760    G    A    464.81    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.171;DB;DP=35;Dels=0.0;FS=3.144;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.482;QD=13.28;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:18,17:35:99:495,0,607
7    21765636    rs2965424    T    C    746.26    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.394;DB;DP=53;Dels=0.0;FS=2.932;HRun=1;HaplotypeScore=3.9008;MQ=60.0;MQ0=0;MQRankSum=0.276;QD=14.08;ReadPosRankSum=-2.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:25,28:53:99:776,0,846
7    21775153    rs2072219    A    C    515.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:549,39,0
7    21775210    rs2270022    A    G    433.88    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.717;DB;DP=40;Dels=0.0;FS=3.052;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.394;QD=10.85;ReadPosRankSum=0.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:22,18:40:99:464,0,714
7    21775443    rs2072221    G    A    1848.67    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=164;Dels=0.0;FS=2.091;HRun=1;HaplotypeScore=3.753;MQ=59.86;MQ0=0;MQRankSum=0.897;QD=11.27;ReadPosRankSum=2.29;SNPEFF_AMINO_ACID_CHANGE=T2549;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21775258_21775462;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:98,66:164:99:1879,0,2969
7    21775521    rs2072222    A    T    1657.67    PASS    AB=0.338;AC=1;AF=0.50;AN=2;BaseQRankSum=3.905;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.567;QD=21.53;ReadPosRankSum=0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:26,51:77:99:1688,0,812
7    21778175    rs886788    C    T    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
7    21778197    rs886789    G    A    163.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
7    21778678    rs2906684    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    21778716    rs16872905    T    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    21779084    rs2906686    G    A    400.52    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.868;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.121;QD=14.83;ReadPosRankSum=-1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:14,13:27:99:431,0,497
7    21779104    rs933353    C    T    1392.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1426,111,0
7    21779331    rs933354    T    C    1129.89    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.096;DB;DP=76;Dels=0.0;FS=4.423;HRun=0;HaplotypeScore=1.399;MQ=59.39;MQ0=0;MQRankSum=-1.017;QD=14.87;ReadPosRankSum=-0.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:32,44:76:99:1160,0,1039
7    21781411    rs35579713    A    G    104.34    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=8.69;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:7,5:12:99:134,0,250
7    21781807    rs1029598    T    C    1989.63    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.604;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=1.499;QD=13.82;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:68,76:144:99:2020,0,2144
7    21784432    rs67536067    A    C    804.94    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.797;DB;DP=58;Dels=0.0;FS=10.626;HRun=1;HaplotypeScore=0.0;MQ=57.98;MQ0=0;MQRankSum=0.123;QD=13.88;ReadPosRankSum=2.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:30,28:58:99:835,0,1005
7    21804852    rs60175069    G    A    178.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.0;QD=17.88;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:4,6:10:99:209,0,122
7    21805227    rs60554135    G    A    404.69    HaplotypeScoreFilter13    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=90.8518;MQ=49.17;MQ0=0;MQRankSum=-1.164;QD=9.64;ReadPosRankSum=-0.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:19,22:42:99:435,0,372
7    21805228    rs71557520    TCACACACACACA    T    455.90    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=2.563;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=492.7959;IndelType=D;MQ=48.24;MQ0=0;MQRankSum=-2.161;QD=11.69;ReadPosRankSum=1.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:25,9:39:99:495,0,1321
7    21805419    rs2286270    C    G    124.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
7    21813318    rs11374411    A    AT    1021.41    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.999;DB;DP=71;FS=1.414;HRun=8;HaplotypeScore=166.3475;IndelType=I;MQ=60.46;MQ0=0;MQRankSum=0.492;QD=14.39;ReadPosRankSum=1.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:34,37:71:99:1060,0,527
7    21818486    rs4273751    A    G    1478.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=37.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1511,117,0
7    21824244    rs4141348    C    A    321.32    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.33;MQ0=0;MQRankSum=0.376;QD=11.48;ReadPosRankSum=0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:17,11:28:99:351,0,606
7    21826035    rs11495974    C    T    51.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.41;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:4,3:7:81.86:82,0,149
7    21826073    rs11496011    C    G    38.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.614;QD=2.78;ReadPosRankSum=-1.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:8,6:14:68.88:69,0,279
7    21826199    rs2072093    G    C    1745.24    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=5.804;DB;DP=114;Dels=0.0;FS=1.941;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.775;QD=15.18;ReadPosRankSum=-0.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:52,61:114:99:1775,0,1417
7    21847457    rs6969900    A    G    158.95    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.079;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.272;QD=8.83;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:11,7:18:99:189,0,355
7    21856151    rs2214326    G    A    1703.14    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.08;DB;DP=171;Dels=0.0;FS=2.852;HRun=0;HaplotypeScore=1.3302;MQ=59.87;MQ0=0;MQRankSum=0.067;QD=9.96;ReadPosRankSum=1.164;SNPEFF_AMINO_ACID_CHANGE=A3474T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21856085_21856320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:106,65:171:99:1733,0,3162
7    21856390    rs4141347    G    A    1557.27    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=87;Dels=0.0;FS=1.283;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.489;QD=17.9;ReadPosRankSum=0.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:39,48:87:99:1587,0,1231
7    21858043    rs10277757    A    G    586.97    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.632;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.81;MQ0=0;MQRankSum=1.335;QD=15.05;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:20,19:39:99:617,0,686
7    21891892    rs191438431    G    A    33.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=4.83;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:4,3:7:63.82:64,0,136
7    21892321    rs28672970    G    A    409.31    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.5;MQ0=0;MQRankSum=-1.018;QD=13.2;ReadPosRankSum=-0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:17,14:31:99:439,0,518
7    21892416    rs2074326    G    A    70.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=8.82;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,182
7    21893993    rs4722064    G    T    1304.42    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=0.187;DB;DP=107;Dels=0.0;FS=1.586;HRun=1;HaplotypeScore=2.6777;MQ=60.0;MQ0=0;MQRankSum=-0.155;QD=12.19;ReadPosRankSum=-0.706;SNPEFF_AMINO_ACID_CHANGE=V3715L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21893933_21894073;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:63,44:107:99:1334,0,1889
7    21901566    rs4722067    T    C    3345    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.53;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=H3773;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21901471_21901641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3345,271,0
7    21901740    rs35912578    C    CT    107.27    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=21;FS=0.0;HRun=14;HaplotypeScore=157.2663;IndelType=I;MQ=54.48;MQ0=0;MQRankSum=-0.185;QD=5.11;ReadPosRankSum=-2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:10,9:21:13.30:146,0,13
7    21905938    rs35623271    C    CA    153.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.118;DB;DP=11;FS=0.0;HRun=15;HaplotypeScore=176.5432;IndelType=I;MQ=48.43;MQ0=0;MQRankSum=0.825;QD=13.92;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:2,5:11:18.92:195,19,0
7    21905977    rs12700317    T    C    542.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=54.2;MQ0=0;QD=21.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,22:25:48.10:575,48,0
7    21907375    rs2074329    G    C    163.03    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=0.163;QD=10.19;ReadPosRankSum=1.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:10,6:16:99:193,0,356
7    21907452    rs5882827    G    GT    1699.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=5;HaplotypeScore=273.5193;IndelType=I;MQ=59.74;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:2,45:47:99:1742,135,0
7    21907696    rs11773744    T    C    154.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=22.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:188,15,0
7    21920046    rs11763022    G    A    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
7    21920165    rs11763025    C    T    141.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=14.19;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:5,5:10:99:172,0,174
7    21923867    rs4439007    C    G    482.59    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=58;Dels=0.0;FS=4.983;HRun=0;HaplotypeScore=0.8667;MQ=59.3;MQ0=0;MQRankSum=-0.654;QD=8.32;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:36,22:58:99:513,0,1142
7    21924014    rs6461613    A    G    1510.02    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.406;DB;DP=103;Dels=0.0;FS=14.193;HRun=0;HaplotypeScore=0.9159;MQ=59.78;MQ0=0;MQRankSum=0.085;QD=14.66;ReadPosRankSum=0.385;SNPEFF_AMINO_ACID_CHANGE=M4172V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21923909_21924028;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:46,57:103:99:1540,0,1519
7    21939032    rs56333627    C    A    2618.78    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.408;DB;DP=181;Dels=0.0;FS=6.774;HRun=0;HaplotypeScore=2.5558;MQ=59.62;MQ0=0;MQRankSum=1.202;QD=14.47;ReadPosRankSum=1.282;SNPEFF_AMINO_ACID_CHANGE=L4383;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_21938954_21939066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328843    GT:AD:DP:GQ:PL    0/1:95,86:181:99:2649,0,2372
7    21939089    rs55714084    C    A    1604.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.297;DB;DP=118;Dels=0.0;FS=3.103;HRun=0;HaplotypeScore=1.7333;MQ=59.61;MQ0=0;MQRankSum=0.453;QD=13.6;ReadPosRankSum=-0.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356195    GT:AD:DP:GQ:PL    0/1:59,59:118:99:1634,0,1900
7    21939342    rs7802456    T    A    200.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356195    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
7    21940557    rs10555456    AACTT    A    5849.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=110;FS=0.0;HRun=0;HaplotypeScore=604.5595;IndelType=D;MQ=55.8;MQ0=0;MQRankSum=1.536;QD=53.17;ReadPosRankSum=-0.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373934    GT:AD:DP:GQ:PL    1/1:4,106:110:99:5849,297,0
7    21940960    rs7971    A    G    593.65    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.219;DB;DP=36;Dels=0.0;FS=2.01;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=1.348;QD=16.49;ReadPosRankSum=0.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373934    GT:AD:DP:GQ:PL    0/1:15,21:36:99:624,0,498
7    21941861    rs75265326    ATCTT    A    1806.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=182.8353;IndelType=D;MQ=51.81;MQ0=0;QD=53.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465490    GT:AD:DP:GQ:PL    1/1:1,33:34:99:1848,99,0
7    21943722    rs35898649    T    C    473.60    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.742;QD=13.93;ReadPosRankSum=-0.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435031    GT:AD:DP:GQ:PL    0/1:16,18:34:99:504,0,496
7    21945840    rs4445125    C    T    1068.35    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.548;DB;DP=64;Dels=0.0;FS=7.893;HRun=0;HaplotypeScore=1.4538;MQ=59.28;MQ0=0;MQRankSum=0.809;QD=16.69;ReadPosRankSum=0.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435031    GT:AD:DP:GQ:PL    0/1:27,36:64:99:1098,0,838
7    21951105    rs11978167    T    G    199.61    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.311;QD=11.09;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356195    GT:AD:DP:GQ:PL    0/1:10,8:18:99:230,0,347
7    21985347    rs1406706    G    A    118.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356195    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:151,12,0
7    22190131    rs10668286    GA    G    51.53    QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DB;DP=78;FS=6.096;HRun=18;HaplotypeScore=575.429;IndelType=D;MQ=51.43;MQ0=0;MQRankSum=3.567;QD=0.66;ReadPosRankSum=1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458533    GT:AD:DP:GQ:PL    0/1:45,10:78:90.56:91,0,342
7    22194363    rs35055245    A    AT    193.68    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;FS=0.0;HRun=6;HaplotypeScore=19.8981;IndelType=I;MQ=58.77;MQ0=0;MQRankSum=0.546;QD=19.37;ReadPosRankSum=1.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451559    GT:AD:DP:GQ:PL    0/1:3,7:10:61.52:233,0,62
7    22197507    rs7809342    A    G    2439.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258735    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2473,193,0
7    22197707    rs6461640    T    C    173.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258735    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:207,18,0
7    22200255    rs955484    G    C    219.02    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=14;Dels=0.0;FS=7.16;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.093;QD=15.64;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258735    GT:AD:DP:GQ:PL    0/1:6,8:14:99:249,0,181
7    22202117    rs12592    G    A    4314.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0234;MQ=59.82;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=D139;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_22202015_22202159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258735    GT:AD:DP:GQ:PL    1/1:0,125:125:99:4314,316,0
7    22202196    rs1981600    T    A    684.02    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.512;DB;DP=61;Dels=0.0;FS=10.756;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.793;QD=11.21;ReadPosRankSum=0.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420196    GT:AD:DP:GQ:PL    0/1:33,28:61:99:714,0,1018
7    22202485    rs1981601    T    C    647.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420196    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:681,51,0
7    22242535    rs4719687    T    C    296.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344041    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:330,24,0
7    22259670    rs1859807    C    A    817.45    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=79;Dels=0.0;FS=1.068;HRun=1;HaplotypeScore=1.8318;MQ=59.71;MQ0=0;MQRankSum=-0.58;QD=10.35;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344041    GT:AD:DP:GQ:PL    0/1:48,31:79:99:847,0,1436
7    22306651    .    GA    G    966.80    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=6.022;DP=75;FS=2.354;HRun=4;HaplotypeScore=176.5258;IndelType=D;MQ=60.19;MQ0=0;MQRankSum=-0.311;QD=12.89;ReadPosRankSum=2.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344041    GT:AD:DP:GQ:PL    0/1:41,34:75:99:1006,0,1261
7    22357716    rs10950897    T    G    126.83    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=10.57;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344041    GT:AD:DP:GQ:PL    0/1:7,5:12:99:157,0,208
7    22459324    rs2177142    G    A    333.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.061;QD=20.85;ReadPosRankSum=-0.546;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406890    GT:AD:DP:GQ:PL    0/1:4,12:16:99:364,0,115
7    22477970    rs2528842    T    C    623.49    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.695;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=14.17;ReadPosRankSum=1.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404369    GT:AD:DP:GQ:PL    0/1:24,20:44:99:653,0,823
7    22478207    rs2528843    G    T    1243.91    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.628;DB;DP=114;Dels=0.0;FS=6.133;HRun=1;HaplotypeScore=1.7552;MQ=59.43;MQ0=0;MQRankSum=2.022;QD=10.91;ReadPosRankSum=0.532;SNPEFF_AMINO_ACID_CHANGE=A310;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_22478038_22478374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404369    GT:AD:DP:GQ:PL    0/1:70,44:114:99:1274,0,2222
7    22532434    rs4000921    G    C    106.37    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.19;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.97;MQ0=2;MQRankSum=-3.079;QD=3.94;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404369    GT:AD:DP:GQ:PL    0/1:15,12:27:99:136,0,510
7    22532758    rs16881814    T    C    42.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.57;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404369    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:72,0,32
7    22533452    .    C    T    416.21    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.309;DP=67;Dels=0.0;FS=18.917;HRun=1;HaplotypeScore=0.9665;MQ=48.25;MQ0=3;MQRankSum=-5.302;QD=6.21;ReadPosRankSum=0.844;SNPEFF_AMINO_ACID_CHANGE=E30K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_22532943_22533455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404369    GT:AD:DP:GQ:PL    0/1:46,21:67:99:446,0,1332
7    22533578    rs145819183    T    C    40.23    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.9;MQ0=0;MQRankSum=-1.398;QD=3.66;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404369    GT:AD:DP:GQ:PL    0/1:7,4:11:70.22:70,0,209
7    22768219    rs1524107    C    T    138.21    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.56;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258743    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,204
7    22768249    rs2066992    G    T    264.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.416;QD=13.22;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258743    GT:AD:DP:GQ:PL    0/1:10,10:20:99:294,0,306
7    22813435    rs3857722    C    T    6092.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=56.91;MQ0=0;QD=34.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073072.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447425    GT:AD:DP:GQ:PL    1/1:2,173:175:99:6093,460,0
7    22813807    rs1546764    A    C    278.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.27;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073072.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447425    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:311,24,0
7    22813879    rs10270171    A    C    173.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.82;MQ0=0;QD=28.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073072.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447425    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:206,18,0
7    22852499    rs2240728    C    T    124.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372879    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
7    22852512    rs2240727    C    T    127.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372879    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
7    22852643    rs1054471    T    A    1445.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496129    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1479,108,0
7    22856785    rs2286501    G    C    248.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496129    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
7    22857477    rs2286499    T    C    100.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358435    GT:AD:DP:GQ:PL    1/1:0,6:6:12.01:133,12,0
7    22857504    rs2286498    T    C    345.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358435    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:379,27,0
7    22857589    rs7782015    T    C    931.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358435    GT:AD:DP:GQ:PL    1/1:0,30:30:75.19:965,75,0
7    22861639    rs981792    C    A    63.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358435    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:96,9,0
7    22861978    rs4354222    G    A    412.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358435    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:446,33,0
7    22862131    rs2270108    A    C    319.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358435    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:352,27,0
7    22862183    rs2270107    G    A    881.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358435    GT:AD:DP:GQ:PL    1/1:0,26:26:72.19:915,72,0
7    22862192    rs2270106    A    G    850.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=25.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358435    GT:AD:DP:GQ:PL    1/1:0,34:34:78.20:884,78,0
7    22862467    rs2270105    G    A    859.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOMM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463284    GT:AD:DP:GQ:PL    1/1:0,28:28:72.22:893,72,0
7    22896231    rs1608553    G    C    1408.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC005682.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415611    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1442,105,0
7    22896340    rs113186057    AC    A    496.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DB;DP=27;FS=0.0;HRun=10;HaplotypeScore=79.0507;IndelType=D;MQ=61.97;MQ0=0;MQRankSum=-0.678;QD=18.4;ReadPosRankSum=-1.281;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408813    GT:AD:DP:GQ:PL    1/1:5,22:27:35.79:539,36,0
7    22986448    rs722699    A    G    166.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM126A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409923    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
7    23000783    rs35493358    G    GCTCT    2002.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=102.506;IndelType=I;MQ=55.66;MQ0=0;QD=66.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM126A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409923    GT:AD:DP:GQ:PL    1/1:5,23:30:81.27:2044,81,0
7    23004373    rs4557595    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM126A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    23004402    rs10950931    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM126A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    23015831    rs3735231    T    C    3216.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.77;MQ0=0;QD=32.17;SNPEFF_AMINO_ACID_CHANGE=S208;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_23015829_23015924;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM126A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409923    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3250,241,0
7    23016530    rs2078535    A    G    1062.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM126A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409763    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1095,81,0
7    23195555    rs79113723    CTTTAT    C    927.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=112.1438;IndelType=D;MQ=59.78;MQ0=0;QD=51.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322231    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:970,51,0
7    23724476    rs7794755    C    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344962    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    23737795    rs5029444    T    C    1915.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344962    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1949,141,0
7    23757162    rs6945306    G    C    176.58    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.536;DB;DP=18;Dels=0.0;FS=2.029;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.449;QD=9.81;ReadPosRankSum=-0.091;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000422637    GT:AD:DP:GQ:PL    0/1:11,7:18:99:207,0,372
7    23768907    rs12176610    A    G    374.40    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=2.248;DB;DP=23;Dels=0.0;FS=2.737;HRun=0;HaplotypeScore=0.6651;MQ=58.99;MQ0=0;MQRankSum=-0.037;QD=16.28;ReadPosRankSum=-0.774;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444333    GT:AD:DP:GQ:PL    0/1:7,16:23:99:404,0,194
7    23776416    rs12539789    A    G    145.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=20.85;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422637    GT:AD:DP:GQ:PL    0/1:2,5:7:52.86:176,0,53
7    23794029    rs4722266    G    A    1429.48    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.807;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.327;QD=16.62;ReadPosRankSum=-0.272;SNPEFF_AMINO_ACID_CHANGE=G387E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_23793934_23794093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    0/1:36,50:86:99:1459,0,1076
7    23794139    rs34664371    TA    T    398.30    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=0.178;DB;DP=38;FS=0.0;HRun=2;HaplotypeScore=141.0844;IndelType=D;MQ=60.28;MQ0=0;MQRankSum=0.471;QD=10.48;ReadPosRankSum=-0.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529549    GT:AD:DP:GQ:PL    0/1:24,14:38:99:437,0,881
7    23794183    rs4722267    A    G    323.77    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.448;QD=13.49;ReadPosRankSum=-0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529549    GT:AD:DP:GQ:PL    0/1:11,13:24:99:354,0,338
7    23808506    rs62468659    A    G    188.91    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.376;QD=11.81;ReadPosRankSum=1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    0/1:9,7:16:99:219,0,331
7    23808604    rs61564984    C    A    1091.18    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8237;MQ=59.74;MQ0=0;MQRankSum=-2.297;QD=12.54;ReadPosRankSum=0.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    0/1:50,37:87:99:1121,0,1569
7    23810517    rs7785154    G    A    1086.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    1/1:0,30:30:87.24:1120,87,0
7    23810523    rs41273996    C    G    569.93    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.942;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=0.42;QD=18.38;ReadPosRankSum=0.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    0/1:13,18:31:99:600,0,464
7    23810605    rs1469000    T    C    778.87    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.547;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7447;MQ=59.67;MQ0=0;MQRankSum=0.115;QD=11.29;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    0/1:40,29:69:99:809,0,1313
7    23810845    rs1469001    G    A    983.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    1/1:0,25:25:75.24:1017,75,0
7    23823144    rs10950961    A    G    217.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.575;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.39;MQ0=0;MQRankSum=2.237;QD=8.05;ReadPosRankSum=1.003;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476399    GT:AD:DP:GQ:PL    0/1:18,9:27:99:247,0,625
7    23823355    rs6461737    A    G    427    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.11;MQ0=0;MQRankSum=-0.077;QD=16.42;ReadPosRankSum=-1.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476399    GT:AD:DP:GQ:PL    0/1:12,14:26:99:457,0,431
7    23826066    rs1862068    A    G    293.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476399    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:327,24,0
7    23854717    rs2390814    C    T    342.40    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=23;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.131;QD=14.89;ReadPosRankSum=0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    0/1:12,11:23:99:372,0,330
7    23854838    rs5882915    G    GA    1020.08    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.427;DB;DP=48;FS=0.0;HRun=1;HaplotypeScore=102.7242;IndelType=I;MQ=60.9;MQ0=0;MQRankSum=2.494;QD=21.25;ReadPosRankSum=-0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354639    GT:AD:DP:GQ:PL    0/1:21,27:48:99:1059,0,674
7    23872024    rs56362098    C    CTTTG    906.24    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.972;DB;DP=28;FS=3.9;HRun=0;HaplotypeScore=95.9198;IndelType=I;MQ=58.94;MQ0=0;MQRankSum=-0.025;QD=32.37;ReadPosRankSum=-1.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405627    GT:AD:DP:GQ:PL    0/1:12,16:28:99:945,0,505
7    24324670    rs16142    A    G    110.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242152    GT:AD:DP:GQ:PL    0/1:2,4:6:53.28:140,0,53
7    24324759    rs16141    T    G    204.44    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.781;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.537;QD=10.22;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242152    GT:AD:DP:GQ:PL    0/1:11,9:20:99:234,0,264
7    24324808    rs16140    C    G    767.40    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DB;DP=44;Dels=0.0;FS=5.141;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-1.36;QD=17.44;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242152    GT:AD:DP:GQ:PL    0/1:16,28:44:99:797,0,436
7    24325009    rs5573    G    A    396.46    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=18;Dels=0.0;FS=2.667;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.394;QD=22.03;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=S50;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24324860_24325047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242152    GT:AD:DP:GQ:PL    0/1:5,13:18:99:426,0,134
7    24329001    rs113179092    AT    A    329.68    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=41.5933;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=19.39;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242152    GT:AD:DP:GQ:PL    0/1:7,10:17:99:369,0,285
7    24329133    rs5574    C    T    712.34    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.734;DB;DP=48;Dels=0.0;FS=2.444;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.33;QD=14.84;ReadPosRankSum=0.074;SNPEFF_AMINO_ACID_CHANGE=S68;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24329118_24329198;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242152    GT:AD:DP:GQ:PL    0/1:25,23:48:99:742,0,733
7    24689207    rs917265    A    G    942.89    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.65;DB;DP=66;Dels=0.0;FS=2.408;HRun=0;HaplotypeScore=0.6651;MQ=59.37;MQ0=0;MQRankSum=-0.815;QD=14.29;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222644    GT:AD:DP:GQ:PL    0/1:32,34:66:99:973,0,940
7    24703298    rs1053962    G    A    1015.84    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=1.084;DB;DP=67;Dels=0.0;FS=0.968;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.159;QD=15.16;ReadPosRankSum=-0.291;SNPEFF_AMINO_ACID_CHANGE=E135;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24703209_24703340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409761    GT:AD:DP:GQ:PL    0/1:25,41:67:99:1046,0,828
7    24718710    rs722218    A    C    620.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222644    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:653,51,0
7    24742436    rs17149912    T    C    1012.60    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.568;DB;DP=80;Dels=0.0;FS=10.137;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=1.399;QD=12.66;ReadPosRankSum=-2.089;SNPEFF_AMINO_ACID_CHANGE=A20;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24742046_24742452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430096    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1043,0,1247
7    24742585    rs2074142    C    T    205.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:239,18,0
7    24746022    rs2269812    A    G    107.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=13.48;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411476    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,132
7    24747910    rs2721809    G    A    934.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411476    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:968,72,0
7    24756841    .    A    G    31.74    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.26;MQ0=0;MQRankSum=-0.151;QD=1.44;ReadPosRankSum=-2.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414428    GT:AD:DP:GQ:PL    0/1:19,3:22:61.73:62,0,432
7    24756951    rs12540919    C    T    503.82    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.659;DB;DP=22;Dels=0.0;FS=4.545;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=2.912;QD=22.9;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=V207M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24756873_24756993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    0/1:6,16:22:99:534,0,146
7    24757070    .    C    T    155.31    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=12.94;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414428    GT:AD:DP:GQ:PL    0/1:5,7:12:99:185,0,113
7    24758565    rs876308    G    A    725.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414428    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:758,57,0
7    24758645    rs876307    G    T    1656.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414428    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1689,129,0
7    24758753    rs754555    C    T    1074    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.419;DB;DP=76;Dels=0.0;FS=8.066;HRun=1;HaplotypeScore=1.7234;MQ=60.0;MQ0=0;MQRankSum=-0.513;QD=14.13;ReadPosRankSum=0.16;SNPEFF_AMINO_ACID_CHANGE=T163;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24758666_24758837;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    0/1:37,38:76:99:1104,0,961
7    24758795    rs876305    T    C    1943.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=E149;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24758666_24758837;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1977,156,0
7    24758818    rs754554    G    T    646.82    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.987;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-1.984;QD=12.94;ReadPosRankSum=1.104;SNPEFF_AMINO_ACID_CHANGE=P142T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24758666_24758837;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    0/1:28,22:50:99:677,0,958
7    24758852    rs754553    C    T    446.43    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=3.404;DB;DP=33;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=0.734;MQ=59.3;MQ0=0;MQRankSum=0.198;QD=13.53;ReadPosRankSum=-1.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    0/1:17,16:33:99:476,0,475
7    24784403    rs2521768    C    T    488.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    1/1:0,18:18:39.11:522,39,0
7    24784485    rs2521769    A    G    166.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
7    24789082    rs2521770    C    T    758.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342947    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:791,60,0
7    24839712    rs3088014    T    G    291.67    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=1.044;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=29.17;ReadPosRankSum=0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396429    GT:AD:DP:GQ:PL    0/1:1,9:10:5.16:321,0,5
7    24843810    rs2285651    G    T    963.72    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=4.101;DB;DP=60;Dels=0.0;FS=3.085;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.524;QD=16.06;ReadPosRankSum=-0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459987    GT:AD:DP:GQ:PL    0/1:29,31:60:99:994,0,922
7    24844066    rs2285653    C    G    461.23    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=4.003;DB;DP=28;Dels=0.0;FS=6.486;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.577;QD=16.47;ReadPosRankSum=1.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459987    GT:AD:DP:GQ:PL    0/1:13,15:28:99:491,0,328
7    24854765    rs1044956    G    A    1294.30    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=105;Dels=0.0;FS=11.77;HRun=0;HaplotypeScore=3.6582;MQ=59.78;MQ0=0;MQRankSum=1.385;QD=12.33;ReadPosRankSum=-0.221;SNPEFF_AMINO_ACID_CHANGE=S628;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24854678_24854822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409069    GT:AD:DP:GQ:PL    0/1:55,49:105:99:1324,0,1773
7    24859962    rs7810587    A    C    98.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.4;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313367    GT:AD:DP:GQ:PL    0/1:2,4:6:63.74:128,0,64
7    24860000    rs6979174    G    C    125.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313367    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:158,12,0
7    24873911    rs2285687    T    G    338.55    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=35;Dels=0.0;FS=1.741;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.407;QD=9.67;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313367    GT:AD:DP:GQ:PL    0/1:23,12:35:99:369,0,785
7    24874459    rs2285688    A    G    101.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=14.55;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313367    GT:AD:DP:GQ:PL    0/1:3,4:7:99:132,0,101
7    24880303    rs17150267    T    C    520.81    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=38;Dels=0.0;FS=7.354;HRun=1;HaplotypeScore=0.9159;MQ=59.51;MQ0=0;MQRankSum=1.389;QD=13.71;ReadPosRankSum=-1.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461835    GT:AD:DP:GQ:PL    0/1:20,18:38:99:551,0,684
7    24888620    rs757156    T    C    100.22    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=7.71;ReadPosRankSum=-1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313367    GT:AD:DP:GQ:PL    0/1:9,4:13:99:130,0,321
7    24910408    rs41275970    T    C    840.54    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=50;Dels=0.0;FS=16.649;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=16.81;ReadPosRankSum=-0.401;SNPEFF_AMINO_ACID_CHANGE=V108;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_24910351_24910464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313367    GT:AD:DP:GQ:PL    0/1:22,28:50:99:871,0,657
7    25176509    rs76419295    C    G    241.75    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.977;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=12.72;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    0/1:10,9:19:99:272,0,300
7    25181912    rs2285738    T    C    831.98    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.485;DB;DP=58;Dels=0.0;FS=2.198;HRun=0;HaplotypeScore=0.9995;MQ=59.6;MQ0=0;MQRankSum=2.163;QD=14.34;ReadPosRankSum=-0.49;SNPEFF_AMINO_ACID_CHANGE=H300R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_25181860_25181951;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    0/1:26,32:58:99:862,0,668
7    25182001    rs2285737    C    T    317.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.495;QD=14.42;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    0/1:10,12:22:99:347,0,316
7    25182172    rs2285736    A    G    100.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=10.06;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    0/1:5,5:10:99:131,0,180
7    25194618    rs2523073    G    A    878.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443822    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:911,66,0
7    25194665    rs2523072    G    C    853.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.42;SNPEFF_AMINO_ACID_CHANGE=T187S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_25194630_25194811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    1/1:0,29:29:63.21:886,63,0
7    25194753    rs12535348    C    T    407.13    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.229;DB;DP=30;Dels=0.0;FS=3.352;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.603;QD=13.57;ReadPosRankSum=-1.517;SNPEFF_AMINO_ACID_CHANGE=A158T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_25194630_25194811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    0/1:16,14:30:99:437,0,499
7    25194857    rs2717899    A    T    621.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:655,51,0
7    25194918    rs2523071    A    G    208.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:241,18,0
7    25198089    rs2523066    C    G    1254.80    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=90;Dels=0.0;FS=4.493;HRun=0;HaplotypeScore=1.8907;MQ=58.45;MQ0=0;MQRankSum=-0.904;QD=13.94;ReadPosRankSum=-0.344;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415598    GT:AD:DP:GQ:PL    0/1:44,46:90:99:1285,0,1237
7    25200976    rs13221848    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
7    25207849    rs2717859    G    A    607.94    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.082;QD=14.14;ReadPosRankSum=0.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444434    GT:AD:DP:GQ:PL    0/1:22,21:43:99:638,0,682
7    25207974    rs2717858    T    C    1596.69    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=104;Dels=0.0;FS=11.375;HRun=0;HaplotypeScore=0.8667;MQ=59.78;MQ0=0;MQRankSum=-1.979;QD=15.35;ReadPosRankSum=-1.548;SNPEFF_AMINO_ACID_CHANGE=Y82C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_25207908_25208084;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    0/1:47,57:104:99:1627,0,1398
7    25207994    rs2717857    G    A    1502.57    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.75;DB;DP=97;Dels=0.0;FS=8.289;HRun=0;HaplotypeScore=2.3574;MQ=59.76;MQ0=0;MQRankSum=0.577;QD=15.49;ReadPosRankSum=0.033;SNPEFF_AMINO_ACID_CHANGE=P75;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_25207908_25208084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283905    GT:AD:DP:GQ:PL    0/1:47,49:97:99:1533,0,1377
7    25264847    rs2717854    T    A    278.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.801;DB;DP=30;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=4.2555;MQ=59.23;MQ0=0;MQRankSum=-0.173;QD=9.27;ReadPosRankSum=-1.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPVF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222674    GT:AD:DP:GQ:PL    0/1:18,12:30:99:308,0,438
7    25266400    rs2717851    G    A    1439.95    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.661;DB;DP=121;Dels=0.0;FS=7.188;HRun=0;HaplotypeScore=0.9989;MQ=59.81;MQ0=0;MQRankSum=-0.349;QD=11.9;ReadPosRankSum=-1.448;SNPEFF_AMINO_ACID_CHANGE=P128;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_25266245_25266645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPVF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222674    GT:AD:DP:GQ:PL    0/1:68,53:121:99:1470,0,2170
7    25266820    rs2245489    A    C    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.68;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPVF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222674    GT:AD:DP:GQ:PL    0/1:3,2:5:68.41:68,0,109
7    25267963    rs886354    G    C    2323.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_AMINO_ACID_CHANGE=I32M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_25267921_25268105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPVF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222674    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2357,169,0
7    25610118    rs2521744    G    C    154.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.17;ReadPosRankSum=0.876;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091705.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410169    GT:AD:DP:GQ:PL    0/1:4,5:9:99:185,0,134
7    25610380    rs76746311    AT    A    133.11    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.937;DB;DP=27;FS=0.0;HRun=9;HaplotypeScore=174.8481;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=-0.157;QD=4.93;ReadPosRankSum=1.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091705.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410169    GT:AD:DP:GQ:PL    0/1:18,9:27:99:172,0,416
7    25610401    rs1393678    C    A    246.16    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.444;QD=12.31;ReadPosRankSum=0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091705.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410169    GT:AD:DP:GQ:PL    0/1:11,9:20:99:276,0,336
7    25729416    rs73089605    G    A    342.51    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.124;DB;DP=80;Dels=0.0;FS=4.472;HRun=1;HaplotypeScore=0.9998;MQ=59.48;MQ0=0;MQRankSum=1.153;QD=4.28;ReadPosRankSum=-0.655;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC003090.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456777    GT:AD:DP:GQ:PL    0/1:47,33:80:99:373,0,1465
7    25729418    rs9639516    A    G    356.19    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=3.83;DB;DP=81;Dels=0.0;FS=1.891;HRun=0;HaplotypeScore=0.9998;MQ=59.48;MQ0=0;MQRankSum=-0.681;QD=4.4;ReadPosRankSum=0.063;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC003090.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456777    GT:AD:DP:GQ:PL    0/1:49,32:81:99:386,0,1490
7    25989520    rs6977848    T    G    215.51    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.204;QD=11.34;ReadPosRankSum=-1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR148A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362215    GT:AD:DP:GQ:PL    0/1:10,9:19:99:245,0,260
7    25989732    rs111299611    GA    G    119.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=19.4628;IndelType=D;MQ=63.93;MQ0=0;MQRankSum=1.517;QD=14.91;ReadPosRankSum=-1.221;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR148A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362215    GT:AD:DP:GQ:PL    0/1:3,5:8:99:158,0,111
7    26217450    rs7807030    T    A    261.26    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;MQRankSum=1.413;QD=13.75;ReadPosRankSum=-0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000056233    GT:AD:DP:GQ:PL    0/1:9,10:19:99:291,0,316
7    26223294    rs12113404    A    G    419    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.032;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.25;MQ0=0;MQRankSum=-0.788;QD=13.52;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000056233    GT:AD:DP:GQ:PL    0/1:16,15:31:99:449,0,505
7    26223431    rs73281527    C    T    346.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.408;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.969;QD=11.56;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000056233    GT:AD:DP:GQ:PL    0/1:18,12:30:99:377,0,550
7    26224006    rs11445909    A    AT    183.04    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=31.1829;IndelType=I;MQ=58.29;MQ0=0;MQRankSum=-0.365;QD=16.64;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000056233    GT:AD:DP:GQ:PL    0/1:5,6:11:99:222,0,114
7    26224128    rs73281530    G    A    574.52    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.299;DB;DP=43;Dels=0.0;FS=1.279;HRun=2;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=13.36;ReadPosRankSum=-1.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000056233    GT:AD:DP:GQ:PL    0/1:23,20:43:99:605,0,769
7    26224668    rs2074566    C    T    1231.66    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=91;Dels=0.0;FS=3.972;HRun=0;HaplotypeScore=0.8321;MQ=56.08;MQ0=0;MQRankSum=-0.802;QD=13.53;ReadPosRankSum=0.016;SNPEFF_AMINO_ACID_CHANGE=C156;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_26223680_26224851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398175    GT:AD:DP:GQ:PL    0/1:49,41:91:99:1262,0,1467
7    26232367    rs12672536    T    C    89.37    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=9.93;ReadPosRankSum=-2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNRNPA2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495810    GT:AD:DP:GQ:PL    0/1:5,4:9:99:119,0,161
7    26232627    rs56132015    T    G    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNRNPA2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495810    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    26235592    rs111941879    A    ATT    333.14    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.337;DB;DP=19;FS=0.0;HRun=4;HaplotypeScore=63.657;IndelType=I;MQ=61.13;MQ0=0;MQRankSum=1.876;QD=17.53;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNRNPA2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354667    GT:AD:DP:GQ:PL    0/1:11,7:19:99:372,0,307
7    26235637    rs61009175    G    A    57.80    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=5.78;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNRNPA2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354667    GT:AD:DP:GQ:PL    0/1:7,3:10:87.80:88,0,269
7    26236689    rs73281546    A    G    472.37    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.31;DB;DP=45;Dels=0.0;FS=15.464;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.954;QD=10.5;ReadPosRankSum=-1.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNRNPA2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354667    GT:AD:DP:GQ:PL    0/1:26,19:45:99:502,0,912
7    26236778    rs73281548    T    A    137.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=6.88;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNRNPA2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354667    GT:AD:DP:GQ:PL    0/1:12,8:20:99:168,0,433
7    26237238    rs41275982    A    G    893.24    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.375;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.142;QD=19.85;ReadPosRankSum=0.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNRNPA2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354667    GT:AD:DP:GQ:PL    0/1:12,33:45:99:923,0,345
7    26237609    rs11971308    A    C    107.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=15.32;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNRNPA2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354667    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,101
7    26251843    rs9768418    C    T    280.44    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.634;DB;DP=17;Dels=0.0;FS=2.622;HRun=4;HaplotypeScore=0.0;MQ=50.89;MQ0=0;MQRankSum=-1.634;QD=16.5;ReadPosRankSum=-1.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456948    GT:AD:DP:GQ:PL    0/1:5,12:17:93.08:310,0,93
7    26386122    rs3801891    T    A    648.60    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.691;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.461;QD=13.8;ReadPosRankSum=0.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338523    GT:AD:DP:GQ:PL    0/1:24,23:47:99:679,0,655
7    26386154    rs3801890    T    C    382.72    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.096;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.215;QD=10.93;ReadPosRankSum=-1.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338523    GT:AD:DP:GQ:PL    0/1:16,19:35:99:413,0,519
7    26400777    rs71521763    C    T    150.78    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.922;QD=21.54;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412416    GT:AD:DP:GQ:PL    0/1:2,5:7:62.81:181,0,63
7    26404071    rs2253569    G    A    175.60    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=13.51;ReadPosRankSum=0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412416    GT:AD:DP:GQ:PL    0/1:7,6:13:99:206,0,250
7    26576535    rs740182    T    C    2190.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_AMINO_ACID_CHANGE=N85S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_26572740_26576639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0087;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242109    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2223,172,0
7    26577894    rs10241879    A    T    138.14    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=15.35;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0087;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242109    GT:AD:DP:GQ:PL    0/1:4,5:9:99:168,0,141
7    26578105    rs17153822    A    G    186.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.523;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=11.64;ReadPosRankSum=0.158;SNPEFF_AMINO_ACID_CHANGE=D23;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_26578025_26578407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0087;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242109    GT:AD:DP:GQ:PL    0/1:8,8:16:99:216,0,247
7    26724279    rs212850    T    G    270.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345317    GT:AD:DP:GQ:PL    1/1:0,12:12:27.05:303,27,0
7    26730200    rs212857    C    A    87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345317    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
7    26778406    rs10951145    A    G    421.48    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.553;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.496;QD=13.17;ReadPosRankSum=-0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432747    GT:AD:DP:GQ:PL    0/1:14,18:32:99:451,0,457
7    26779620    rs10246483    G    A    365.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.609;QD=20.28;ReadPosRankSum=-0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345317    GT:AD:DP:GQ:PL    0/1:6,12:18:99:395,0,191
7    26779641    rs3735547    C    A    206.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.825;QD=17.23;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345317    GT:AD:DP:GQ:PL    0/1:4,8:12:99:237,0,134
7    27135314    rs10951154    C    T    1048.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8216;MQ=59.34;MQ0=0;QD=29.96;SNPEFF_AMINO_ACID_CHANGE=R73H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_27134880_27135593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343060    GT:AD:DP:GQ:PL    1/1:0,35:35:87.22:1082,87,0
7    27141267    rs706016    C    T    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396352    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
7    27147451    rs150908106    TAA    T    100.61    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DB;DP=28;FS=0.0;HRun=20;HaplotypeScore=237.4108;IndelType=D;MQ=37.19;MQ0=1;MQRankSum=-0.429;QD=3.47;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521401    GT:AD:DP:GQ:PL    0/1:16,8:28:29.76:140,0,30
7    27168719    rs4722662    C    T    775.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521779    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:808,63,0
7    27169093    rs2158218    T    G    2079.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.17;MQ0=0;QD=37.14;SNPEFF_AMINO_ACID_CHANGE=D38A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_27168252_27169158;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000548581    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2113,159,0
7    27169617    rs6943542    T    C    132.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521779    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:165,15,0
7    27169934    rs10251056    A    G    73.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.54;SNPEFF_AMINO_ACID_CHANGE=L140P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_27169737_27170418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360046    GT:AD:DP:GQ:PL    1/1:0,3:3:9:106,9,0
7    27170145    rs6944345    T    G    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_AMINO_ACID_CHANGE=T70P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_27169737_27170418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360046    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    27170583    rs10225507    C    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521779    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    27185280    rs62454417    C    T    1095.06    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=73;Dels=0.0;FS=2.619;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.274;QD=15.0;ReadPosRankSum=1.319;SNPEFF_AMINO_ACID_CHANGE=E233;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_27185015_27185536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222728    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1125,0,1147
7    27196069    rs2301720    A    C    1058.48    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.451;DB;DP=92;Dels=0.0;FS=2.01;HRun=0;HaplotypeScore=1.5572;MQ=59.5;MQ0=0;MQRankSum=-1.17;QD=11.51;ReadPosRankSum=-0.004;SNPEFF_AMINO_ACID_CHANGE=A32;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_27195786_27196298;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242159    GT:AD:DP:GQ:PL    0/1:51,41:92:99:1088,0,1443
7    27196113    rs2301721    C    T    691.56    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.643;DB;DP=93;Dels=0.0;FS=6.678;HRun=0;HaplotypeScore=2.4056;MQ=59.25;MQ0=0;MQRankSum=1.14;QD=7.44;ReadPosRankSum=0.554;SNPEFF_AMINO_ACID_CHANGE=A18T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_27195786_27196298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242159    GT:AD:DP:GQ:PL    0/1:57,35:93:99:722,0,1470
7    27203139    rs7810502    G    A    650.36    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=53;Dels=0.0;FS=7.198;HRun=2;HaplotypeScore=0.9665;MQ=59.13;MQ0=0;MQRankSum=-0.558;QD=12.27;ReadPosRankSum=0.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396345    GT:AD:DP:GQ:PL    0/1:27,26:53:99:680,0,865
7    27209292    .    A    G    59.82    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.62;MQ0=0;MQRankSum=0.747;QD=4.98;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283921    GT:AD:DP:GQ:PL    0/1:3,8:12:19.52:90,0,20
7    27238691    rs2071265    C    G    195.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HOXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222753    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:228,18,0
7    27571058    rs1014372    C    G    43.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=7.23;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265395    GT:AD:DP:GQ:PL    0/1:2,4:6:59.26:73,0,59
7    27571093    rs1014373    G    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265395    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    27578068    rs17607303    T    C    384.84    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.615;DB;DP=27;Dels=0.0;FS=7.832;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.655;QD=14.25;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265395    GT:AD:DP:GQ:PL    0/1:13,14:27:99:415,0,314
7    27578167    rs9639553    C    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265395    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    27582783    rs978447    G    A    375.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265395    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
7    27668860    rs6415252    C    T    713.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265395    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:747,57,0
7    27668970    rs118079418    A    G    1050.83    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=3.734;DB;DP=86;Dels=0.0;FS=0.876;HRun=0;HaplotypeScore=1.9632;MQ=59.46;MQ0=0;MQRankSum=0.31;QD=12.22;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265395    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1081,0,1442
7    27671899    rs7779990    T    C    1085.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIBADH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265395    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1119,81,0
7    27788493    rs2074769    C    T    107.85    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=17.98;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAX1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265393    GT:AD:DP:GQ:PL    0/1:1,5:6:27.60:138,0,28
7    27809208    rs140675527    T    A    161.37    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=12.41;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAX1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418691    GT:AD:DP:GQ:PL    0/1:7,6:13:99:191,0,251
7    27827103    rs11540483    T    A    415.95    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=41;Dels=0.0;FS=1.258;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.232;QD=10.15;ReadPosRankSum=-0.014;SNPEFF_AMINO_ACID_CHANGE=L150I;SNPEFF_CODON_CHANGE=Tta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_27827037_27827222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAX1BP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433216    GT:AD:DP:GQ:PL    0/1:26,15:41:99:446,0,851
7    27831503    rs73075307    T    A    143.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.851;QD=14.38;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAX1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265393    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,125
7    27872675    rs56070801    A    G    109.60    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=21.92;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAX1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265393    GT:AD:DP:GQ:PL    0/1:1,4:5:22.75:140,0,23
7    27885969    rs74847888    CGT    C    221.71    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=72.4914;IndelType=D;MQ=56.14;MQ0=0;MQRankSum=1.186;QD=20.16;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420835    GT:AD:DP:GQ:PL    0/1:5,6:11:99:261,0,258
7    27886011    .    C    CATATACGTATACGTGTAT    2286.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.692;DP=26;FS=0.0;HRun=0;HaplotypeScore=296.917;IndelType=I;MQ=52.86;MQ0=0;MQRankSum=-3.026;QD=87.95;ReadPosRankSum=-0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420835    GT:AD:DP:GQ:PL    0/1:13,11:26:99:2326,0,1539
7    27886171    rs6462054    A    G    1573.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.76;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283928    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1607,123,0
7    28031704    rs73089199    T    C    1128.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.368;DB;DP=100;Dels=0.0;FS=11.653;HRun=0;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;MQRankSum=-0.06;QD=11.28;ReadPosRankSum=1.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283928    GT:AD:DP:GQ:PL    0/1:60,40:100:99:1158,0,1878
7    28060576    rs10251664    A    G    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283928    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
7    28528026    rs56206127    G    A    63.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=9.04;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    0/1:3,4:7:93.28:93,0,106
7    28534501    rs35652380    C    CT    1280.49    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.36;DB;DP=114;FS=1.65;HRun=9;HaplotypeScore=328.6979;IndelType=I;MQ=59.66;MQ0=0;MQRankSum=0.839;QD=11.23;ReadPosRankSum=-0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    0/1:62,52:114:99:1320,0,1018
7    28547048    rs12333835    T    C    373.94    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.834;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.122;QD=14.96;ReadPosRankSum=-0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    0/1:11,14:25:99:404,0,382
7    28673541    rs41305    G    A    1527.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1560,117,0
7    28758638    rs879593    T    G    192.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:225,18,0
7    28758648    rs879592    A    G    71.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=12.0;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    0/1:2,4:6:63.98:102,0,64
7    28764109    rs2066979    T    C    88.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    28857606    rs12531253    G    A    669.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:702,51,0
7    28858456    rs10951205    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357727    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    28996220    rs1006521    G    A    93.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC005013.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539664    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
7    28996944    rs740250    T    C    385.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC005013.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539664    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:419,33,0
7    28997497    rs67715783    GC    G    1276.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=2;HaplotypeScore=123.5549;IndelType=D;MQ=59.62;MQ0=0;QD=35.45;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC005013.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000539664    GT:AD:DP:GQ:PL    1/1:1,35:36:99:1318,102,0
7    28997596    rs79480773    G    GC    812.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=90.201;IndelType=I;MQ=58.22;MQ0=0;QD=40.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC005013.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539664    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:854,57,0
7    28997765    rs740252    C    G    83.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC005013.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539664    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
7    29070209    rs7313    G    A    4268.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5678;MQ=59.67;MQ0=0;QD=30.49;SNPEFF_AMINO_ACID_CHANGE=A100V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_29070193_29070375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455893    GT:AD:DP:GQ:PL    1/1:0,136:140:99:4269,319,0
7    29103867    rs644763    T    C    751.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448959    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:784,63,0
7    29103877    rs2074783    T    C    233.34    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=0.954;QD=8.97;ReadPosRankSum=-1.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448959    GT:AD:DP:GQ:PL    0/1:15,11:26:99:263,0,506
7    29103944    rs34641639    A    AT    452.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=49.5916;IndelType=I;MQ=57.87;MQ0=0;QD=41.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448959    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:495,33,0
7    29105465    rs550396    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448959    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    29105776    rs2270027    A    G    540.79    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.224;DB;DP=43;Dels=0.02;FS=2.123;HRun=0;HaplotypeScore=3.866;MQ=58.95;MQ0=0;MQRankSum=-1.011;QD=12.29;ReadPosRankSum=-1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265394    GT:AD:DP:GQ:PL    0/1:24,19:43:99:571,0,735
7    29111578    rs2074784    A    C    346.38    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=38;Dels=0.0;FS=4.59;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.572;QD=9.12;ReadPosRankSum=-0.943;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447426    GT:AD:DP:GQ:PL    0/1:22,16:38:99:376,0,693
7    29111620    rs317719    A    C    735.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=36.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447426    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:769,57,0
7    29132212    rs2687636    A    G    232.23    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=17;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;MQRankSum=-1.059;QD=13.66;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488891    GT:AD:DP:GQ:PL    0/1:7,10:17:99:262,0,176
7    29135569    rs2286992    C    T    542.08    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.23;MQ0=0;MQRankSum=-0.419;QD=18.07;ReadPosRankSum=0.084;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488891    GT:AD:DP:GQ:PL    0/1:13,17:30:99:572,0,413
7    29186256    rs245880    A    G    342.85    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=34;Dels=0.0;FS=5.284;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.647;QD=10.08;ReadPosRankSum=0.122;SNPEFF_AMINO_ACID_CHANGE=P19;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_29186185_29186361;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439384    GT:AD:DP:GQ:PL    0/1:20,14:34:99:373,0,618
7    29186576    rs245881    A    G    1082.21    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=60;Dels=0.0;FS=1.618;HRun=1;HaplotypeScore=1.6649;MQ=59.62;MQ0=0;MQRankSum=0.936;QD=18.04;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=N92D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_29186465_29186576;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439384    GT:AD:DP:GQ:PL    0/1:28,32:60:99:1112,0,887
7    29252980    rs39055    A    G    225.40    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8665;MQ=60.0;MQ0=0;MQRankSum=1.222;QD=16.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222792    GT:AD:DP:GQ:PL    0/1:6,8:14:99:255,0,201
7    29407488    rs2301776    T    C    307.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.308;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.646;QD=12.81;ReadPosRankSum=-1.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222792    GT:AD:DP:GQ:PL    0/1:12,12:24:99:337,0,388
7    29437867    rs7799981    T    C    139.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222792    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:173,15,0
7    29440511    rs13246507    A    G    100.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=11.16;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409350    GT:AD:DP:GQ:PL    0/1:3,6:9:99:130,0,103
7    29520042    rs1476991    G    A    487.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.07;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.58;QD=17.4;ReadPosRankSum=-1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222792    GT:AD:DP:GQ:PL    0/1:12,16:28:99:517,0,393
7    29544298    .    C    CTT    211.16    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DP=26;FS=0.0;HRun=14;HaplotypeScore=256.8863;IndelType=I;MQ=52.45;MQ0=0;MQRankSum=-0.741;QD=8.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222792    GT:AD:DP:GQ:PL    0/1:14,6:26:99:250,0,99
7    29544610    rs6462145    A    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493906    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:73,0,30
7    29546763    rs35012257    A    AT    245.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.538;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=135.8154;IndelType=I;MQ=56.45;MQ0=0;MQRankSum=0.807;QD=12.26;ReadPosRankSum=0.673;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493906    GT:AD:DP:GQ:PL    1/1:5,13:20:3.23:284,3,0
7    29552463    rs1420145    C    G    253.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410098    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
7    29605935    rs2302617    G    A    111.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.13;ReadPosRankSum=0.633;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_29605801_29606911;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319694    GT:AD:DP:GQ:PL    0/1:6,4:10:99:141,0,149
7    29605975    rs2302618    C    G    434.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_AMINO_ACID_CHANGE=S10;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_29605801_29606911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319694    GT:AD:DP:GQ:PL    1/1:0,15:15:39.09:468,39,0
7    29606288    rs10271996    C    T    203.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.01;SNPEFF_AMINO_ACID_CHANGE=P115S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_29605801_29606911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319694    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:236,18,0
7    29915329    rs55682334    G    A    261.88    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.738;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.002;QD=11.9;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242140    GT:AD:DP:GQ:PL    0/1:13,9:22:99:292,0,414
7    29915593    rs2301922    G    C    1166.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242140    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1199,102,0
7    29924221    rs13310795    T    C    210.42    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.2;MQ0=0;MQRankSum=-1.182;QD=16.19;ReadPosRankSum=-2.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242140    GT:AD:DP:GQ:PL    0/1:3,10:13:54.68:240,0,55
7    29927660    rs75880120    G    A    500.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.761;DB;DP=42;Dels=0.0;FS=1.242;HRun=1;HaplotypeScore=0.9989;MQ=58.89;MQ0=0;MQRankSum=1.207;QD=11.91;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242140    GT:AD:DP:GQ:PL    0/1:21,21:42:99:530,0,645
7    29944062    rs4722959    A    T    739.88    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.553;DB;DP=43;Dels=0.0;FS=1.686;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.501;QD=17.21;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409290    GT:AD:DP:GQ:PL    0/1:19,24:43:99:770,0,654
7    29954030    rs148500629    TG    T    77.93    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;FS=0.0;HRun=7;HaplotypeScore=29.2173;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=6.49;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409290    GT:AD:DP:GQ:PL    0/1:7,5:12:99:117,0,217
7    29965934    rs75117198    T    C    178.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.69;MQ0=0;MQRankSum=-0.365;QD=17.84;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242059    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,116
7    29966294    rs17158502    C    T    444.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.302;DB;DP=25;Dels=0.0;FS=4.075;HRun=0;HaplotypeScore=1.7172;MQ=59.07;MQ0=0;MQRankSum=-0.361;QD=17.8;ReadPosRankSum=-0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242059    GT:AD:DP:GQ:PL    0/1:10,15:25:99:475,0,255
7    29980471    rs35960711    C    T    1503.88    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.751;DB;DP=117;Dels=0.0;FS=0.787;HRun=1;HaplotypeScore=1.7621;MQ=59.61;MQ0=0;MQRankSum=-0.229;QD=12.74;ReadPosRankSum=-1.173;SNPEFF_AMINO_ACID_CHANGE=S121N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_29980298_29980492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425819    GT:AD:DP:GQ:PL    0/1:68,49:117:99:1534,0,1961
7    29994945    rs75604334    C    G    652.44    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=53;Dels=0.0;FS=2.794;HRun=0;HaplotypeScore=0.9789;MQ=59.65;MQ0=0;MQRankSum=-1.965;QD=12.31;ReadPosRankSum=-2.234;SNPEFF_AMINO_ACID_CHANGE=R64T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_29994795_29994976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242059    GT:AD:DP:GQ:PL    0/1:30,23:53:99:682,0,1009
7    30062202    rs2302626    A    G    108.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.02;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222803    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,127
7    30062557    rs10231351    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222803    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    30087381    rs10488085    A    G    227.70    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.841;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.126;QD=8.43;ReadPosRankSum=0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258679    GT:AD:DP:GQ:PL    0/1:17,10:27:99:258,0,593
7    30113706    rs11977829    A    G    1235.81    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.902;DB;DP=123;Dels=0.0;FS=13.95;HRun=0;HaplotypeScore=3.936;MQ=58.71;MQ0=0;MQRankSum=-0.326;QD=10.05;ReadPosRankSum=-0.087;SNPEFF_AMINO_ACID_CHANGE=T440;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_30113687_30113748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHA8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396257    GT:AD:DP:GQ:PL    0/1:74,49:123:99:1266,0,2168
7    30113862    .    T    TTG    391.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.248;DP=28;FS=0.0;HRun=0;HaplotypeScore=134.105;IndelType=I;MQ=58.33;MQ0=0;MQRankSum=-0.496;QD=13.98;ReadPosRankSum=-0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258679    GT:AD:DP:GQ:PL    1/1:17,6:28:7.42:432,7,0
7    30177035    rs6973967    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324453    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    30177095    rs6954451    G    T    287.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324453    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
7    30329598    rs151056013    CTATT    C    198.88    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=74.2632;IndelType=D;MQ=55.38;MQ0=0;MQRankSum=-1.333;QD=11.05;ReadPosRankSum=1.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459998    GT:AD:DP:GQ:PL    0/1:12,6:17:99:238,0,524
7    30485703    rs55996014    G    GC    312.51    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=4.985;DB;DP=39;FS=4.146;HRun=6;HaplotypeScore=167.8195;IndelType=I;MQ=58.36;MQ0=0;MQRankSum=-0.062;QD=7.81;ReadPosRankSum=1.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222823    GT:AD:DP:GQ:PL    0/1:26,14:39:99:352,0,649
7    30485741    rs2907749    A    G    326.24    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.711;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.2;MQ0=0;MQRankSum=1.913;QD=5.62;ReadPosRankSum=-1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222823    GT:AD:DP:GQ:PL    0/1:40,18:58:99:356,0,1294
7    30490760    rs2075822    A    G    63.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=7.95;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423334    GT:AD:DP:GQ:PL    0/1:5,3:8:93.58:94,0,177
7    30538651    rs38409    T    C    1087.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_AMINO_ACID_CHANGE=N3S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_30538419_30538804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GGCT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000497601    GT:AD:DP:GQ:PL    1/1:1,29:30:81.27:1121,81,0
7    30540399    rs38410    G    T    322.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GGCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005374    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:356,27,0
7    30540482    rs40237    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GGCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005374    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    30544360    rs38414    G    A    1765.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.09;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_30544185_30544418;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GGCT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005374    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1798,135,0
7    30634661    rs1049402    C    G    131.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_AMINO_ACID_CHANGE=P42A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_30634297_30634759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389266    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
7    30642499    rs2709809    C    A    124.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;QD=24.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389266    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
7    30643069    rs1558064    C    A    454.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454308    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:487,36,0
7    30651938    rs1986756    G    A    942.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389266    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:976,75,0
7    30660938    rs10951271    A    C    1697.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.49;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389266    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1731,129,0
7    30662237    rs10249885    G    A    422.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484093    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:455,36,0
7    30673345    rs2240401    C    T    2195.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=34.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444666    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2228,169,0
7    30673512    rs112769590    TA    T    228.52    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=33;FS=0.0;HRun=15;HaplotypeScore=163.2071;IndelType=D;MQ=57.49;MQ0=0;MQRankSum=0.423;QD=6.92;ReadPosRankSum=-0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444666    GT:AD:DP:GQ:PL    0/1:15,18:33:8.02:267,0,8
7    30739525    rs255119    G    A    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348438    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
7    30739691    rs107540    A    G    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462882    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
7    30793228    rs2075005    G    A    477.21    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=5.077;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.239;QD=12.56;ReadPosRankSum=1.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013222    GT:AD:DP:GQ:PL    0/1:23,15:38:99:507,0,638
7    30795331    rs2302340    A    G    779.76    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.805;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.26;MQ0=0;MQRankSum=-0.881;QD=11.3;ReadPosRankSum=-0.881;SNPEFF_AMINO_ACID_CHANGE=E218G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_30795038_30795467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INMT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409539    GT:AD:DP:GQ:PL    0/1:40,29:69:99:810,0,1250
7    30795436    rs4720015    T    G    2927.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=F253C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_30795038_30795467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INMT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409539    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2960,214,0
7    30795547    rs6970396    A    G    668.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.12;MQ0=0;QD=37.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409539    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:702,54,0
7    30831144    rs16875355    C    T    218.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=13.65;ReadPosRankSum=-1.096;SNPEFF_AMINO_ACID_CHANGE=L343;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_30830781_30831190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM188B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265299    GT:AD:DP:GQ:PL    0/1:8,8:16:99:248,0,236
7    30868475    rs12667273    T    C    79.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.583;QD=6.65;ReadPosRankSum=-1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM188B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265299    GT:AD:DP:GQ:PL    0/1:6,6:12:99:110,0,219
7    30868511    rs73091463    T    C    73.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.26;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM188B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265299    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:103,0,21
7    30876123    rs10247874    G    A    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM188B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265299    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
7    30876432    rs10258097    A    G    352.91    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.584;QD=16.04;ReadPosRankSum=0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM188B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265299    GT:AD:DP:GQ:PL    0/1:10,11:22:99:383,0,355
7    30880413    rs34970833    G    A    579.25    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.556;DB;DP=40;Dels=0.0;FS=1.29;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.443;QD=14.48;ReadPosRankSum=-0.614;SNPEFF_AMINO_ACID_CHANGE=C465Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_30880376_30880464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM188B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265299    GT:AD:DP:GQ:PL    0/1:17,23:40:99:609,0,479
7    30911984    rs3801323    G    T    65.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=7.33;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434909    GT:AD:DP:GQ:PL    0/1:6,3:9:95.92:96,0,202
7    30915262    rs10215354    C    T    336.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9704;MQ=59.69;MQ0=0;MQRankSum=-0.925;QD=4.49;ReadPosRankSum=-0.849;SNPEFF_AMINO_ACID_CHANGE=N117;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_30915110_30915271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-877J2.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000509504    GT:AD:DP:GQ:PL    0/1:30,45:75:99:367,0,965
7    30915263    rs10216063    A    G    315.43    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9704;MQ=59.7;MQ0=0;MQRankSum=0.856;QD=4.15;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_7_30915110_30915271;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000434909    GT:AD:DP:GQ:PL    0/1:31,45:76:99:345,0,928
7    30922467    rs10252929    G    C    1591.17    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=86;Dels=0.0;FS=4.677;HRun=0;HaplotypeScore=1.6649;MQ=59.19;MQ0=0;MQRankSum=-0.041;QD=18.5;ReadPosRankSum=0.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434909    GT:AD:DP:GQ:PL    0/1:33,52:86:99:1621,0,859
7    30922478    rs10252754    C    G    2049.96    PASS    AB=0.369;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=112;Dels=0.0;FS=0.943;HRun=0;HaplotypeScore=3.5611;MQ=59.17;MQ0=0;MQRankSum=1.731;QD=18.3;ReadPosRankSum=-0.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434909    GT:AD:DP:GQ:PL    0/1:41,70:112:99:2080,0,1147
7    30931317    rs16875372    G    C    130.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434909    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
7    31008607    rs4988495    C    T    198.55    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.067;DB;DP=15;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=13.24;ReadPosRankSum=1.562;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GHRHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466427    GT:AD:DP:GQ:PL    0/1:8,7:15:99:229,0,256
7    31008686    rs4988496    G    A    71.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.99;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=A57T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31008678_31008785;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GHRHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326139    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,107
7    31009576    rs4988498    G    T    943.94    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=57;Dels=0.0;FS=1.301;HRun=0;HaplotypeScore=0.5784;MQ=57.95;MQ0=0;MQRankSum=1.651;QD=16.56;ReadPosRankSum=0.205;SNPEFF_AMINO_ACID_CHANGE=E121D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31009482_31009579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GHRHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326139    GT:AD:DP:GQ:PL    0/1:26,31:57:99:974,0,805
7    31011485    rs4988501    A    G    455.63    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=25;Dels=0.0;FS=5.409;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.177;QD=18.23;ReadPosRankSum=1.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GHRHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466427    GT:AD:DP:GQ:PL    0/1:11,14:25:99:486,0,335
7    31015840    rs36115000    G    T    34.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GHRHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461390    GT:AD:DP:GQ:PL    0/1:3,2:5:64.18:64,0,93
7    31015879    rs10245096    G    A    67.39    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.42;ReadPosRankSum=1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GHRHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461390    GT:AD:DP:GQ:PL    0/1:5,3:8:97.39:97,0,142
7    31017103    rs4988505    G    C    211.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GHRHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461390    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:245,21,0
7    31023108    rs10252510    G    A    742.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GHRHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326139    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:775,60,0
7    31125082    rs78205423    A    AG    2443.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=2;HaplotypeScore=148.6906;IndelType=I;MQ=61.06;MQ0=0;QD=40.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCYAP1R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304166    GT:AD:DP:GQ:PL    1/1:1,60:61:99:2486,175,0
7    31356561    rs78351285    C    G    434.23    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=37;Dels=0.0;FS=5.002;HRun=1;HaplotypeScore=0.0;MQ=58.23;MQ0=0;MQRankSum=-0.23;QD=11.74;ReadPosRankSum=-1.548;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC006380.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408824    GT:AD:DP:GQ:PL    0/1:21,16:37:99:464,0,693
7    31356645    rs76169255    G    C    377.10    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.356;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.634;QD=10.19;ReadPosRankSum=1.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC006380.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408824    GT:AD:DP:GQ:PL    0/1:22,15:37:99:407,0,747
7    31378933    rs2233404    A    G    821.74    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=54;Dels=0.0;FS=11.913;HRun=1;HaplotypeScore=0.734;MQ=59.57;MQ0=0;MQRankSum=-0.612;QD=15.22;ReadPosRankSum=0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEUROD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297142    GT:AD:DP:GQ:PL    0/1:23,31:54:99:852,0,814
7    31592419    rs7793821    T    A    210.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
7    31592733    rs7811042    C    A    1321.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.41;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=A32D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31592620_31592801;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1354,99,0
7    31594166    rs2286710    C    T    2186.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5338;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2219,166,0
7    31594258    rs12155214    G    T    630.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,18:18:51.12:663,51,0
7    31611522    rs2041364    A    G    127.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
7    31611758    rs67930674    G    T    929.91    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.311;DB;DP=89;Dels=0.0;FS=0.834;HRun=0;HaplotypeScore=1.7608;MQ=59.53;MQ0=0;MQRankSum=-0.709;QD=10.45;ReadPosRankSum=1.309;SNPEFF_AMINO_ACID_CHANGE=G117;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31611716_31611802;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    0/1:53,35:89:99:960,0,1711
7    31617733    rs6945679    T    C    3852.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.3964;MQ=59.8;MQ0=0;QD=32.93;SNPEFF_AMINO_ACID_CHANGE=V193;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31617477_31618048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409210    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3853,310,0
7    31618008    rs10252720    A    G    3350.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.76;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=H285R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31617477_31618048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409210    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3350,253,0
7    31682122    rs38395    G    A    31.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=10.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,3:3:6:63,6,0
7    31682453    rs4141001    C    T    4766.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3548;MQ=59.67;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=A342V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31682296_31683567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,140:141:99:4766,358,0
7    31683410    rs10247620    G    A    5176.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8154;MQ=59.54;MQ0=0;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=C661Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31682296_31683567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,151:151:99:5177,385,0
7    31683610    rs38398    G    A    1612.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1646,120,0
7    31691697    rs3735424    T    C    932.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319386    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:965,72,0
7    31731863    rs12154298    G    C    34.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.7;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342032    GT:AD:DP:GQ:PL    0/1:4,2:6:64.18:64,0,133
7    31735263    rs34173    G    C    1999.29    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.071;DB;DP=156;Dels=0.0;FS=2.453;HRun=0;HaplotypeScore=0.9947;MQ=59.53;MQ0=0;MQRankSum=-0.894;QD=12.82;ReadPosRankSum=1.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342032    GT:AD:DP:GQ:PL    0/1:81,75:156:99:2029,0,2359
7    31735297    rs34174    T    G    1326.72    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5592;MQ=59.47;MQ0=0;MQRankSum=1.588;QD=13.97;ReadPosRankSum=0.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342032    GT:AD:DP:GQ:PL    0/1:50,45:95:99:1357,0,1660
7    31735315    rs79503171    T    C    1115.04    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.904;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9562;MQ=59.0;MQ0=0;MQRankSum=-0.834;QD=15.07;ReadPosRankSum=0.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342032    GT:AD:DP:GQ:PL    0/1:36,37:74:99:1145,0,1155
7    31746837    rs2072409    C    T    230.19    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=0.925;DB;DP=35;Dels=0.0;FS=1.478;HRun=0;HaplotypeScore=0.5784;MQ=59.34;MQ0=0;MQRankSum=-0.811;QD=6.58;ReadPosRankSum=-0.396;SNPEFF_AMINO_ACID_CHANGE=D136;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31746818_31748069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342032    GT:AD:DP:GQ:PL    0/1:26,9:35:99:260,0,820
7    31855420    rs1860789    A    G    397.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321453    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:431,33,0
7    31855578    rs1860790    G    A    4316.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=N591;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_31855538_31855768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321453    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4317,316,0
7    31867638    rs2191873    C    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321453    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    31876766    rs2270218    T    C    1201.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321453    GT:AD:DP:GQ:PL    1/1:0,37:37:93.27:1235,93,0
7    31890106    rs917756    T    C    205.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321453    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
7    31918879    rs1860786    C    T    229.29    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=22.93;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396189    GT:AD:DP:GQ:PL    0/1:1,9:10:17.68:259,0,18
7    31918917    rs1860787    A    C    203.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396189    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
7    32110115    rs30598    C    G    230.59    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=20.96;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321453    GT:AD:DP:GQ:PL    0/1:3,8:11:77.80:261,0,78
7    32209193    rs12701178    A    G    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    32209425    rs977625    A    G    3143.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7356;MQ=59.75;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=S94P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_32209397_32209568;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396193    GT:AD:DP:GQ:PL    1/1:0,92:93:99:3177,244,0
7    32248984    rs10951324    G    A    598.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396193    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:632,48,0
7    32249216    rs2240676    A    G    526.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396193    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:560,42,0
7    32338337    rs215607    G    A    1128.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=27.52;SNPEFF_AMINO_ACID_CHANGE=A4V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_32338263_32338941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396193    GT:AD:DP:GQ:PL    1/1:0,40:41:93.22:1161,93,0
7    32527009    rs7800049    G    A    162.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409292    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
7    32528796    rs41276006    T    G    483.94    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6642;MQ=60.0;MQ0=0;MQRankSum=-0.436;QD=16.13;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409292    GT:AD:DP:GQ:PL    0/1:14,16:30:99:514,0,492
7    32529936    rs1584614    G    C    1127.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=P14;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_32529932_32529992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409987    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1161,90,0
7    32530105    rs1584613    G    C    137.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409909    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:170,15,0
7    32591135    rs3213972    G    A    462.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:496,39,0
7    32591158    rs3213973    G    A    395.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:428,33,0
7    32593234    rs10717407    CT    C    309.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=141.252;IndelType=D;MQ=57.32;MQ0=0;QD=15.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485228    GT:AD:DP:GQ:PL    1/1:3,17:20:51.78:352,52,0
7    32593271    rs6961786    G    A    799.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=57.78;MQ0=0;QD=27.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485228    GT:AD:DP:GQ:PL    1/1:0,29:29:72.19:832,72,0
7    32594278    rs2290210    A    G    766.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485228    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:799,60,0
7    32598087    rs12673921    G    A    775.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:808,66,0
7    32598138    rs12673881    C    T    1417.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1451,114,0
7    32598359    rs1562828    G    A    529.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:562,42,0
7    32598524    rs1466144    G    A    1223.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1257,93,0
7    32599204    rs34973430    A    AT    198.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=9.0639;IndelType=I;MQ=60.0;MQ0=0;QD=39.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
7    32609565    rs2305320    A    G    921.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,27:27:81.22:955,81,0
7    32613020    rs1993050    A    G    1216.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;QD=32.87;SNPEFF_AMINO_ACID_CHANGE=T451;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_32612811_32613030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446718    GT:AD:DP:GQ:PL    1/1:0,37:37:93.28:1249,93,0
7    32615553    rs6462381    C    T    2240.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2274,169,0
7    32619653    rs6462383    T    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    32620325    rs35499747    T    TTG    259.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=13.1061;IndelType=I;MQ=60.0;MQ0=0;QD=43.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:301,18,0
7    32623250    rs1817046    C    T    124    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318709    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
7    32623796    rs2060707    C    T    83.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329714    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
7    32660758    rs2302066    C    A    1031.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.49;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1065,81,0
7    32674934    rs4000170    A    C    925.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.59;MQ0=4;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    1/1:0,34:34:69.23:958,69,0
7    32856794    rs6959982    A    G    767.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.47;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:801,60,0
7    32860847    rs147370802    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    1/1:0,3:3:8.99:81,9,0
7    32956941    rs139835645    C    T    1402.74    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.852;DB;DP=237;Dels=0.0;FS=0.642;HRun=0;HaplotypeScore=2.6761;MQ=21.48;MQ0=69;MQRankSum=1.138;QD=5.92;ReadPosRankSum=-0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    0/1:134,103:237:99:1433,0,1541
7    32981870    rs66460543    AT    A    131.92    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=14;FS=2.688;HRun=1;HaplotypeScore=129.6042;IndelType=D;MQ=54.85;MQ0=0;MQRankSum=-2.13;QD=9.42;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    0/1:8,6:14:99:171,0,249
7    32981879    .    AC    A    253.49    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=1;HaplotypeScore=125.0123;IndelType=D;MQ=54.85;MQ0=0;QD=18.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    1/1:8,6:14:36.88:296,37,0
7    33016120    rs3750116    G    T    972.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.96;MQ0=6;QD=24.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464334    GT:AD:DP:GQ:PL    1/1:0,40:40:84.21:1005,84,0
7    33055164    rs7790368    T    C    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=22.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409787    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
7    33059407    rs2392209    A    G    237.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449201    GT:AD:DP:GQ:PL    1/1:1,8:9:21.06:270,21,0
7    33060946    rs3750117    A    G    1948.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=Y131;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_33060884_33060969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242210    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1981,147,0
7    33061235    rs3750118    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449201    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    33078661    rs10280692    T    C    249.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
7    33078698    rs6462453    T    G    174.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AVL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404479    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
7    33134883    rs150987618    T    C    562.36    MQFilter40    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.097;DB;DP=210;DS;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=1.445;MQ=14.29;MQ0=93;MQRankSum=1.315;QD=2.68;ReadPosRankSum=0.205;SNPEFF_AMINO_ACID_CHANGE=K210R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_33134409_33135044;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297157    GT:AD:DP:GQ:PL    0/1:134,76:210:99:592,0,591
7    33135226    rs11773214    A    T    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474370    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
7    33136983    rs6462460    G    A    1117.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474370    GT:AD:DP:GQ:PL    1/1:0,35:36:87.28:1150,87,0
7    33138875    rs11771864    A    T    1148.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492391    GT:AD:DP:GQ:PL    1/1:0,33:33:90.26:1181,90,0
7    33139147    rs17472556    G    A    567.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492391    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:601,45,0
7    33186065    rs77462109    T    G    63.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.453;QD=6.37;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:5,5:10:93.68:94,0,189
7    33186066    rs116927029    T    A    53.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.47;QD=5.36;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:5,5:10:83.60:84,0,180
7    33186082    rs1969575    C    G    201.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
7    33192166    rs1406606    T    C    91.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=9.18;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:6,4:10:99:122,0,221
7    33192502    rs17169881    A    G    467.25    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=32;Dels=0.0;FS=3.743;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.175;QD=14.6;ReadPosRankSum=-1.771;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482941    GT:AD:DP:GQ:PL    0/1:12,20:32:99:497,0,388
7    33192591    rs10241188    G    T    234.32    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=18.02;ReadPosRankSum=-1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482941    GT:AD:DP:GQ:PL    0/1:5,8:13:99:264,0,173
7    33282577    rs7793096    G    A    749.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=58;Dels=0.0;FS=1.023;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.995;QD=12.93;ReadPosRankSum=-3.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:29,29:58:99:780,0,899
7    33297108    rs142354634    TCA    T    267.27    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=50.6663;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=17.82;ReadPosRankSum=1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:7,8:15:99:306,0,349
7    33304107    rs7810388    A    G    379.80    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.011;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.317;QD=18.99;ReadPosRankSum=-1.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:7,13:20:99:410,0,224
7    33380598    rs11981364    G    T    351.14    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=34;Dels=0.0;FS=9.342;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.673;QD=10.33;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:21,13:34:99:381,0,683
7    33380673    rs10486527    T    C    147.63    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=19;Dels=0.0;FS=4.102;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.543;QD=7.77;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:12,7:19:99:178,0,396
7    33388618    rs9785054    C    T    896.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:929,69,0
7    33388713    rs11773504    G    A    1022.60    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=0.123;DB;DP=68;Dels=0.0;FS=0.944;HRun=5;HaplotypeScore=0.7887;MQ=59.66;MQ0=0;MQRankSum=-0.271;QD=15.04;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=A333T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_33388680_33388782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537775    GT:AD:DP:GQ:PL    0/1:31,37:68:99:1053,0,1052
7    33388829    rs73101660    T    A    1280.50    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.601;DB;DP=112;Dels=0.0;FS=5.016;HRun=5;HaplotypeScore=1.81;MQ=60.0;MQ0=0;MQRankSum=0.219;QD=11.43;ReadPosRankSum=-0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242067    GT:AD:DP:GQ:PL    0/1:52,60:112:99:1310,0,1663
7    33389110    rs4270862    C    T    97.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.922;QD=10.8;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396125    GT:AD:DP:GQ:PL    0/1:4,5:9:99:127,0,134
7    33391089    rs35557465    G    A    333.63    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.271;DB;DP=21;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=15.89;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396125    GT:AD:DP:GQ:PL    0/1:10,11:21:99:364,0,280
7    33392380    rs11769616    A    G    224.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.888;QD=9.34;ReadPosRankSum=-0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396125    GT:AD:DP:GQ:PL    0/1:16,8:24:99:254,0,549
7    33644941    rs1050719    T    C    497.44    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.0;QD=16.58;ReadPosRankSum=-0.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489708    GT:AD:DP:GQ:PL    0/1:13,17:30:99:527,0,440
7    33644948    rs1050721    C    T    406.27    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.026;QD=16.25;ReadPosRankSum=-1.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489708    GT:AD:DP:GQ:PL    0/1:10,15:25:99:436,0,297
7    33767061    rs4720136    T    C    177.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-89N17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311067    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:210,18,0
7    33767107    rs2232117    C    T    187.20    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=17.02;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-89N17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311067    GT:AD:DP:GQ:PL    0/1:4,7:11:99:217,0,100
7    33767178    rs2232121    G    A    200.83    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.827;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.827;QD=8.03;ReadPosRankSum=1.072;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_33767140_33768068;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-89N17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311067    GT:AD:DP:GQ:PL    0/1:16,9:25:99:231,0,521
7    34009946    rs10265207    C    T    297.76    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=29;Dels=0.0;FS=4.563;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=10.27;ReadPosRankSum=-1.357;SNPEFF_AMINO_ACID_CHANGE=A103V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_34009941_34010031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BMPER;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436222    GT:AD:DP:GQ:PL    0/1:16,13:29:99:328,0,520
7    34101562    rs71554122    G    GTTTT    301.06    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.457;DB;DP=24;FS=0.0;HRun=15;HaplotypeScore=206.6335;IndelType=I;MQ=48.33;MQ0=0;MQRankSum=-2.774;QD=12.54;ReadPosRankSum=0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BMPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297161    GT:AD:DP:GQ:PL    0/1:16,5:24:99:340,0,327
7    34125420    rs77064045    G    T    523.79    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=3.995;DB;DP=32;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=2.089;QD=16.37;ReadPosRankSum=-1.156;SNPEFF_AMINO_ACID_CHANGE=P487;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_34125368_34125704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BMPER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297161    GT:AD:DP:GQ:PL    0/1:13,19:32:99:554,0,311
7    34192762    rs6968741    G    C    1244.19    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=3.547;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.411;MQ=59.59;MQ0=0;MQRankSum=1.243;QD=11.01;ReadPosRankSum=0.07;SNPEFF_AMINO_ACID_CHANGE=T645;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_34192704_34195484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BMPER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297161    GT:AD:DP:GQ:PL    0/1:71,42:113:99:1274,0,1844
7    34609220    rs35513597    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC005688.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358772    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    34697922    rs2530547    C    T    499.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_34697897_34698171;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359791    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:533,39,0
7    34697982    rs887020    A    G    354.33    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.11;QD=14.76;ReadPosRankSum=1.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005493.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399077    GT:AD:DP:GQ:PL    0/1:10,14:24:99:384,0,277
7    34698210    rs2530548    A    G    621.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.662;DB;DP=35;Dels=0.0;FS=3.873;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.017;QD=17.77;ReadPosRankSum=1.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005493.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399077    GT:AD:DP:GQ:PL    0/1:14,21:35:99:652,0,474
7    34698234    rs2530549    A    C    416.06    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.27;QD=14.86;ReadPosRankSum=-1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005493.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399077    GT:AD:DP:GQ:PL    0/1:11,17:28:99:446,0,333
7    34698251    rs2530550    C    G    336.93    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=23;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.788;QD=14.65;ReadPosRankSum=-0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005493.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399077    GT:AD:DP:GQ:PL    0/1:11,12:23:99:367,0,334
7    34698321    rs2530551    A    G    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.15;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005493.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399077    GT:AD:DP:GQ:PL    0/1:2,2:4:60.89:67,0,61
7    34698331    rs401256    G    T    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.63;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005493.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399077    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:69,0,70
7    34698376    rs2530552    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005493.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399077    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    34699530    rs1458546    T    C    30.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=7.58;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005493.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399077    GT:AD:DP:GQ:PL    0/1:2,2:4:60.31:60,0,71
7    34818113    rs324981    A    T    224.24    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=8.97;ReadPosRankSum=-0.027;SNPEFF_AMINO_ACID_CHANGE=N107I;SNPEFF_CODON_CHANGE=aAt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_34818074_34818177;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359791    GT:AD:DP:GQ:PL    0/1:14,11:25:99:254,0,452
7    34820301    rs1419780    C    G    708.99    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.612;DB;DP=62;Dels=0.0;FS=2.674;HRun=0;HaplotypeScore=1.7046;MQ=60.0;MQ0=0;MQRankSum=-0.03;QD=11.44;ReadPosRankSum=0.958;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381553    GT:AD:DP:GQ:PL    0/1:39,23:62:99:739,0,1169
7    34851393    rs9655357    C    G    988.01    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=83;Dels=0.0;FS=6.097;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.842;QD=11.9;ReadPosRankSum=0.918;SNPEFF_AMINO_ACID_CHANGE=L121;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_34851382_34851475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531252    GT:AD:DP:GQ:PL    0/1:48,35:83:99:1018,0,1399
7    34867255    rs5883474    C    CA    367.83    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=21;FS=3.757;HRun=0;HaplotypeScore=91.7679;IndelType=I;MQ=59.11;MQ0=0;MQRankSum=0.454;QD=17.52;ReadPosRankSum=1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334481    GT:AD:DP:GQ:PL    0/1:8,13:21:99:407,0,262
7    34867340    rs2109124    G    A    40.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=5.77;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334481    GT:AD:DP:GQ:PL    0/1:3,4:7:70.37:70,0,111
7    35271254    rs2075047    T    C    228.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=1.222;QD=16.32;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408931    GT:AD:DP:GQ:PL    0/1:6,8:14:99:258,0,175
7    35280404    rs2075048    C    T    211.07    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.19;MQ0=0;MQRankSum=1.179;QD=23.45;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408931    GT:AD:DP:GQ:PL    0/1:2,7:9:57.82:241,0,58
7    35289889    rs11428369    C    CA    378.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=41.5227;IndelType=I;MQ=55.66;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408931    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:420,30,0
7    35293193    rs336283    A    G    103.55    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.244;QD=7.97;ReadPosRankSum=0.831;SNPEFF_AMINO_ACID_CHANGE=S13;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_35293105_35293758;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408931    GT:AD:DP:GQ:PL    0/1:7,6:13:99:134,0,243
7    35912637    rs6955154    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350320    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
7    35912693    rs9639717    T    C    38.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350320    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
7    35923396    rs35686699    A    ATT    518.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.197;DB;DP=24;FS=0.0;HRun=14;HaplotypeScore=223.6546;IndelType=I;MQ=52.87;MQ0=0;MQRankSum=-0.567;QD=21.6;ReadPosRankSum=-1.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475109    GT:AD:DP:GQ:PL    1/1:4,14:24:20.81:560,21,0
7    35987379    rs2727847    C    T    1200.82    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.496;DB;DP=82;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.0;MQ=25.33;MQ0=38;MQRankSum=-0.787;QD=14.64;ReadPosRankSum=-1.732;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SEPT7P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455017    GT:AD:DP:GQ:PL    1/1:24,57:82:68.98:1234,69,0
7    36124292    rs1986593    G    A    272.05    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.077;QD=19.43;ReadPosRankSum=-0.386;SNPEFF_AMINO_ACID_CHANGE=T98;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36124082_36125346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC083864.4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381493    GT:AD:DP:GQ:PL    0/1:5,9:14:99:302,0,115
7    36320821    rs196586    G    A    341.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_AMINO_ACID_CHANGE=S343N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36320724_36320834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242108    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:374,27,0
7    36324130    rs122025    G    C    790.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242108    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:823,63,0
7    36324436    rs13232200    G    A    1074.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242108    GT:AD:DP:GQ:PL    1/1:0,31:31:90.25:1108,90,0
7    36336968    rs2270319    C    G    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487069    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    36338378    rs196611    G    A    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487069    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
7    36338564    rs2241141    G    A    2631.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.2;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487069    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2665,199,0
7    36338589    rs11773889    C    T    1154.66    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=98;Dels=0.0;FS=0.801;HRun=0;HaplotypeScore=5.217;MQ=59.29;MQ0=0;MQRankSum=0.82;QD=11.78;ReadPosRankSum=-0.964;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487069    GT:AD:DP:GQ:PL    0/1:52,46:98:99:1185,0,1476
7    36338749    rs196613    T    C    823.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.23;MQ0=0;QD=27.44;SNPEFF_AMINO_ACID_CHANGE=D548;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36338616_36341152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242108    GT:AD:DP:GQ:PL    1/1:0,30:30:72.20:856,72,0
7    36338841    rs196614    T    C    218.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468591    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:251,21,0
7    36366178    rs196654    A    G    172.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0895;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453212    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
7    36366569    rs196655    A    T    436.27    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=26;Dels=0.0;FS=2.12;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=16.78;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0895;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297063    GT:AD:DP:GQ:PL    0/1:11,15:26:99:466,0,345
7    36370499    rs196659    C    G    704.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0895;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431396    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:737,54,0
7    36370555    rs196660    G    T    1338.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0895;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431396    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1372,108,0
7    36396358    rs197328    G    A    219.73    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=18.31;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0895;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429651    GT:AD:DP:GQ:PL    0/1:5,7:12:99:250,0,141
7    36435745    rs10215150    C    G    110.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.76;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,143
7    36438709    rs3735400    C    G    508.13    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.505;DB;DP=41;Dels=0.0;FS=1.266;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.274;QD=12.39;ReadPosRankSum=2.955;SNPEFF_AMINO_ACID_CHANGE=S43W;SNPEFF_CODON_CHANGE=tCg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36438688_36439002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424865    GT:AD:DP:GQ:PL    0/1:23,18:41:99:538,0,720
7    36445589    rs1362270    T    A    139.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:173,15,0
7    36445856    rs62873663    G    A    1070.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=17.54;SNPEFF_AMINO_ACID_CHANGE=R163K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36445790_36445875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424865    GT:AD:DP:GQ:PL    1/1:0,61:61:81.27:1103,81,0
7    36446121    rs3735398    A    G    1687.74    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=3.297;DB;DP=128;Dels=0.0;FS=4.364;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=13.19;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=L273;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36445790_36446175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    0/1:65,63:128:99:1718,0,2072
7    36447349    rs112558277    A    ACTT    2807.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=128.8799;IndelType=I;MQ=57.36;MQ0=0;QD=58.49;SNPEFF_AMINO_ACID_CHANGE=T294TS;SNPEFF_CODON_CHANGE=act/aCTTct;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_7_36447343_36447565;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:4,44:48:99:2849,129,0
7    36447600    rs3801315    T    C    638.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424865    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:671,51,0
7    36455477    rs10224902    T    C    2295.57    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=4.731;DB;DP=140;Dels=0.0;FS=6.62;HRun=1;HaplotypeScore=2.3122;MQ=60.0;MQ0=0;MQRankSum=-2.107;QD=16.4;ReadPosRankSum=1.143;SNPEFF_AMINO_ACID_CHANGE=S502;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36455367_36455493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    0/1:65,75:140:99:2326,0,1917
7    36456614    rs3779226    C    A    877.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.04;FS=0.0;HRun=10;HaplotypeScore=1.6316;MQ=58.33;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:0,27:27:78.22:910,78,0
7    36456870    rs78667831    A    G    146.86    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=9.18;ReadPosRankSum=0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495714    GT:AD:DP:GQ:PL    0/1:10,6:16:99:177,0,359
7    36458828    rs17170590    G    A    418.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495714    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:451,33,0
7    36460419    rs72196578    CA    C    585.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=3;HaplotypeScore=51.94;IndelType=D;MQ=61.26;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495714    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:627,51,0
7    36460467    rs56385393    T    A    32.46    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.64;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495714    GT:AD:DP:GQ:PL    0/1:5,2:7:62.45:62,0,180
7    36461442    rs79624523    T    C    466.90    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.407;DB;DP=41;Dels=0.0;FS=9.043;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.222;QD=11.39;ReadPosRankSum=1.195;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495714    GT:AD:DP:GQ:PL    0/1:23,18:41:99:497,0,724
7    36462205    rs2302526    G    A    527.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;DB;DP=16;Dels=0.0;FS=12.041;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.519;QD=32.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:1,15:16:5.50:558,5,0
7    36463335    rs2302527    A    G    481.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:515,39,0
7    36465570    rs6957214    T    C    1156.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=55.8;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1190,90,0
7    36465606    .    CT    C    217.32    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DP=39;FS=20.72;HRun=15;HaplotypeScore=286.9322;IndelType=D;MQ=53.41;MQ0=0;MQRankSum=0.77;QD=5.57;ReadPosRankSum=1.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    0/1:15,20:39:99:256,0,111
7    36466655    rs3815484    C    A    155.30    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.273;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.105;QD=4.57;ReadPosRankSum=-0.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    0/1:26,8:34:99:185,0,794
7    36466669    rs3815485    T    G    649.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.04;FS=0.0;HRun=1;HaplotypeScore=2.8315;MQ=59.07;MQ0=0;QD=25.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:682,60,0
7    36478677    rs75829944    G    A    293.11    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.923;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.711;QD=9.46;ReadPosRankSum=-0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    0/1:21,10:31:99:323,0,705
7    36483213    rs2286961    T    C    176    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
7    36489477    rs3801304    A    G    472.46    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.798;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.43;MQ0=0;MQRankSum=-0.774;QD=14.32;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    0/1:15,18:33:99:502,0,427
7    36491811    rs17170593    G    A    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    0/1:2,2:4:60.19:70,0,60
7    36492045    rs3801302    G    A    3139.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265748    GT:AD:DP:GQ:PL    1/1:1,98:99:99:3172,253,0
7    36492212    rs2052197    C    T    2830.56    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=4.198;DB;DP=219;Dels=0.0;FS=4.767;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=2.311;QD=12.92;ReadPosRankSum=0.223;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491782    GT:AD:DP:GQ:PL    0/1:117,101:219:99:2861,0,3306
7    36552656    rs7986    G    A    436.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.789;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.67;MQ0=0;MQRankSum=-0.344;QD=12.85;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=P682L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36552640_36552732;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544647    GT:AD:DP:GQ:PL    0/1:17,17:34:99:467,0,503
7    36552729    rs139631639    A    AT    2179.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=3;HaplotypeScore=232.4434;IndelType=I;MQ=51.05;MQ0=0;QD=38.23;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_36552610_36552986;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000431169    GT:AD:DP:GQ:PL    1/1:6,51:57:99:2221,160,0
7    36552790    rs66656166    G    GT    2643.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=2;HaplotypeScore=230.0761;IndelType=I;MQ=54.45;MQ0=0;QD=37.76;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_36552610_36552986;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000431169    GT:AD:DP:GQ:PL    1/1:6,64:70:99:2685,190,0
7    36553943    rs9648053    G    C    101.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=10.12;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258749    GT:AD:DP:GQ:PL    0/1:6,4:10:99:131,0,214
7    36588405    rs5883561    A    AC    238.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=23.4518;IndelType=I;MQ=62.65;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258749    GT:AD:DP:GQ:PL    1/1:1,7:8:21.03:280,21,0
7    36588955    rs3735397    G    A    792.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258749    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:825,60,0
7    36656147    rs2727818    A    T    277.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258749    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:310,24,0
7    36660502    rs35645334    CATGA    C    169.34    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=59.2956;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=1.221;QD=13.03;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543742    GT:AD:DP:GQ:PL    0/1:8,5:13:99:208,0,196
7    36661423    rs2727822    T    C    3197.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.77;MQ0=0;QD=32.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543742    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3231,277,0
7    36662714    rs138218104    AGTCTT    A    298.15    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=71.2272;IndelType=D;MQ=54.44;MQ0=0;MQRankSum=-0.583;QD=22.93;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543742    GT:AD:DP:GQ:PL    0/1:7,6:13:99:337,0,518
7    36671720    rs3832509    GA    G    54.14    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=37.4206;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=4.51;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258749    GT:AD:DP:GQ:PL    0/1:7,5:12:93.17:93,0,128
7    36698592    rs6979282    T    G    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.98;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258749    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,94
7    36763560    rs6462703    C    T    406.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258749    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:440,33,0
7    36763688    rs2228411    C    T    1756.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=S22;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_36763627_36764153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AOAH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258749    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1790,132,0
7    36934448    rs6462722    A    G    1452.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420636    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1485,114,0
7    37136404    rs142418410    C    G    263.73    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=20.29;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    0/1:4,9:13:99:294,0,132
7    37145008    rs4723612    G    A    733.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.156;QD=28.19;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    1/1:2,24:26:30.57:766,31,0
7    37252929    rs7809365    T    C    606.88    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.361;DB;DP=53;Dels=0.0;FS=2.418;HRun=0;HaplotypeScore=1.7339;MQ=59.13;MQ0=0;MQRankSum=1.769;QD=11.45;ReadPosRankSum=-0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    0/1:31,22:53:99:637,0,857
7    37253093    rs7809548    T    A    137.25    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.747;QD=17.16;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    0/1:1,7:8:18.95:167,0,19
7    37256016    rs10230588    C    G    32.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.42;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    0/1:4,2:6:62.49:62,0,149
7    37256320    .    CCACA    C    1667.51    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=6.805;DP=67;FS=9.404;HRun=0;HaplotypeScore=343.5763;IndelType=D;MQ=55.51;MQ0=0;MQRankSum=0.296;QD=24.89;ReadPosRankSum=0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    0/1:34,33:67:99:1707,0,2218
7    37256392    rs7806425    G    A    470.73    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.34;MQ0=0;MQRankSum=0.046;QD=16.81;ReadPosRankSum=0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    0/1:13,15:28:99:501,0,452
7    37257526    rs73108954    T    C    31.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:61,0,31
7    37355590    rs11383031    C    CT    6264.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;FS=0.0;HRun=2;HaplotypeScore=320.0196;IndelType=I;MQ=59.67;MQ0=0;QD=42.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    1/1:4,145:149:99:6264,436,0
7    37382520    rs17259252    G    A    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310758    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
7    37780626    rs61729277    C    T    997.49    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.698;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.367;QD=12.79;ReadPosRankSum=-0.591;SNPEFF_AMINO_ACID_CHANGE=L211;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_37779996_37780913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR141;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334425    GT:AD:DP:GQ:PL    0/1:42,36:78:99:1027,0,1448
7    37889786    rs10271309    A    G    1003.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:1036,81,0
7    37901581    rs2249451    G    A    761.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:794,60,0
7    37903853    rs3816419    A    T    231.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:265,21,0
7    37903904    rs3816418    C    T    604.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:638,48,0
7    37904065    rs140916941    TAAC    T    646.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=97.7961;IndelType=D;MQ=58.36;MQ0=0;QD=43.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455500    GT:AD:DP:GQ:PL    1/1:1,14:15:42.14:689,42,0
7    37904099    rs3816417    G    A    365.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455500    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:398,33,0
7    37907304    rs10250905    T    C    881.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=C208R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_37907304_37907500;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000199447    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:915,69,0
7    37916311    rs2598022    A    T    195.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=19.54;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:4,6:10:99:225,0,101
7    37923849    rs1993052    G    A    381.96    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.889;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.23;QD=13.64;ReadPosRankSum=-0.737;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:13,15:28:99:412,0,426
7    37924737    rs1530822    T    G    380.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.121;DB;DP=32;Dels=0.0;FS=3.851;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=-1.235;QD=11.89;ReadPosRankSum=0.855;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:18,14:32:99:411,0,546
7    37924879    rs2242027    A    G    394.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.656;QD=19.72;ReadPosRankSum=-1.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:8,12:20:99:424,0,256
7    37927702    rs2722365    G    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:2,2:4:58.38:71,0,58
7    37927779    rs2251179    T    G    286.51    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.55;MQ0=0;MQRankSum=0.054;QD=17.91;ReadPosRankSum=0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:6,10:16:99:317,0,190
7    37933983    rs10260487    C    G    337.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.234;QD=18.75;ReadPosRankSum=-0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:6,12:18:99:367,0,206
7    37934234    rs10261071    G    A    244.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=20;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.197;QD=12.22;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:12,8:20:99:274,0,358
7    37936286    rs2598121    C    T    129.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
7    37936289    rs2598120    C    T    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
7    37936384    rs2598119    T    C    1765.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=38.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1799,135,0
7    37936530    rs3213975    T    C    1390    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.087;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=59.53;MQ0=0;MQRankSum=-0.832;QD=14.18;ReadPosRankSum=-1.566;SNPEFF_AMINO_ACID_CHANGE=L535;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_37936472_37936709;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000199447    GT:AD:DP:GQ:PL    0/1:52,46:98:99:1420,0,1605
7    37947164    rs1802073    G    T    539.74    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8905;MQ=58.84;MQ0=0;MQRankSum=1.538;QD=9.0;ReadPosRankSum=-0.527;SNPEFF_AMINO_ACID_CHANGE=P317T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_37946796_37947266;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446575    GT:AD:DP:GQ:PL    0/1:39,21:60:99:570,0,832
7    37951726    rs1132553    G    A    612.34    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=67;Dels=0.0;FS=9.414;HRun=1;HaplotypeScore=0.9665;MQ=59.31;MQ0=0;MQRankSum=0.546;QD=9.14;ReadPosRankSum=0.452;SNPEFF_AMINO_ACID_CHANGE=R128;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_37951721_37951919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447200    GT:AD:DP:GQ:PL    0/1:41,26:67:99:642,0,1205
7    37953720    rs2248554    C    A    165.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.248;QD=18.34;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476620    GT:AD:DP:GQ:PL    0/1:3,6:9:95.14:195,0,95
7    37953840    rs1132552    C    T    684.90    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.03;DB;DP=49;Dels=0.0;FS=1.26;HRun=0;HaplotypeScore=1.981;MQ=60.0;MQ0=0;MQRankSum=1.733;QD=13.98;ReadPosRankSum=0.17;SNPEFF_AMINO_ACID_CHANGE=T186;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_37953815_37953880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446575    GT:AD:DP:GQ:PL    0/1:23,26:49:99:715,0,707
7    37960835    rs13240429    G    A    79.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=13.29;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199448    GT:AD:DP:GQ:PL    0/1:2,4:6:23.21:110,0,23
7    37960955    rs4723716    T    G    78.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199448    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
7    37988589    rs2044831    C    T    1944.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_AMINO_ACID_CHANGE=I259;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_37988442_37988650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000199448    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1977,144,0
7    37989775    rs1450851    T    C    608.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199448    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:642,48,0
7    38253923    rs3778894    C    A    539.20    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.759;QD=10.57;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000009041    GT:AD:DP:GQ:PL    0/1:33,18:51:99:569,0,1085
7    38279448    rs151249047    G    C    106.76    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.05;MQ0=0;MQRankSum=0.322;QD=13.34;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,5:8:71.29:137,0,71
7    38282130    rs35917252    G    GGT    1182.05    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.892;DB;DP=86;FS=0.0;HRun=0;HaplotypeScore=245.674;IndelType=I;MQ=59.34;MQ0=0;MQRankSum=-0.52;QD=13.59;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:59,28:86:99:1221,0,724
7    38284649    rs112543808    A    T    128.75    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.969;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.91;MQ0=0;MQRankSum=-3.378;QD=5.85;ReadPosRankSum=1.263;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,8:22:99:159,0,532
7    38284794    rs2008893    C    T    597.04    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=163;Dels=0.0;FS=0.749;HRun=3;HaplotypeScore=5.035;MQ=56.33;MQ0=0;MQRankSum=-2.836;QD=3.66;ReadPosRankSum=-0.798;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:125,38:163:99:627,0,3932
7    38284804    rs4629747    T    C    553.62    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.37;DB;DP=174;Dels=0.0;FS=0.766;HRun=0;HaplotypeScore=3.2524;MQ=56.85;MQ0=0;MQRankSum=-3.105;QD=3.18;ReadPosRankSum=-0.104;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:137,36:174:99:584,0,4372
7    38284808    rs4434531    A    C    566.43    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=3.43;DB;DP=173;Dels=0.0;FS=2.635;HRun=0;HaplotypeScore=3.2524;MQ=56.69;MQ0=0;MQRankSum=-5.111;QD=3.27;ReadPosRankSum=-0.512;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:136,37:173:99:596,0,4220
7    38284834    rs67534383    A    G    521.51    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=2.332;DB;DP=177;Dels=0.0;FS=2.82;HRun=1;HaplotypeScore=3.568;MQ=56.61;MQ0=0;MQRankSum=-4.916;QD=2.95;ReadPosRankSum=0.563;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:141,34:177:99:552,0,4296
7    38284854    rs73360756    C    T    324.80    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.31;DB;DP=152;Dels=0.0;FS=10.169;HRun=0;HaplotypeScore=1.6646;MQ=55.7;MQ0=0;MQRankSum=-5.29;QD=2.14;ReadPosRankSum=-0.558;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:116,36:152:99:355,0,3715
7    38284913    rs149178316    TCTGA    T    303.99    PASS    AB=0.901;AC=1;AF=0.50;AN=2;BaseQRankSum=4.635;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=462.0301;IndelType=D;MQ=55.6;MQ0=0;MQRankSum=-4.731;QD=4.75;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:57,7:64:99:343,0,4311
7    38284976    rs73360757    T    C    35.16    QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8824;MQ=53.78;MQ0=0;MQRankSum=-3.775;QD=1.1;ReadPosRankSum=-0.075;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,7:32:65.15:65,0,887
7    38285011    rs79574993    C    T    78.49    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.91;MQ0=0;MQRankSum=-3.241;QD=5.23;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,6:15:99:108,0,324
7    38285022    .    TTGG    T    236.56    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DP=14;FS=0.0;HRun=0;HaplotypeScore=206.0646;IndelType=D;MQ=45.83;MQ0=0;MQRankSum=-3.163;QD=16.9;ReadPosRankSum=0.71;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,6:14:99:276,0,526
7    38285029    rs112465744    A    G    81.50    SnpCluster    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.83;MQ0=0;MQRankSum=-3.163;QD=5.82;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,6:14:99:111,0,285
7    38285035    .    G    A    54.09    SnpCluster    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.61;MQ0=0;MQRankSum=-2.793;QD=4.51;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,5:12:84.08:84,0,253
7    38285037    .    G    A    54.09    SnpCluster    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.61;MQ0=0;MQRankSum=-2.793;QD=4.51;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,5:12:84.08:84,0,251
7    38285040    rs111930212    G    A    57.10    SnpCluster    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.07;MQ0=0;MQRankSum=-2.637;QD=5.19;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,5:11:87.09:87,0,216
7    38285053    rs73360759    A    G    44.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.65;MQ0=0;MQRankSum=-2.017;QD=5.55;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,4:8:74.43:74,0,135
7    38288831    rs58176718    T    C    346.11    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.589;DB;DP=31;Dels=0.0;FS=2.235;HRun=0;HaplotypeScore=0.0;MQ=44.83;MQ0=0;MQRankSum=-3.814;QD=11.16;ReadPosRankSum=-0.099;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,15:31:99:376,0,524
7    38289085    rs147430032    G    A    2848.50    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.178;DB;DP=195;Dels=0.0;FS=2.495;HRun=0;HaplotypeScore=2.1101;MQ=56.43;MQ0=0;MQRankSum=3.196;QD=14.61;ReadPosRankSum=3.308;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:103,92:195:99:2878,0,3033
7    38292916    rs10252198    C    T    179.69    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=2.398;HRun=2;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=0.529;QD=14.97;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,7:12:99:210,0,135
7    38299727    rs138027161    T    C    255.44    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=91;Dels=0.0;FS=2.594;HRun=1;HaplotypeScore=3.6557;MQ=20.89;MQ0=23;MQRankSum=1.855;QD=2.81;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRGC1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:65,26:91:99:285,0,950
7    38313079    rs55819448    G    C    287    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=20.5;ReadPosRankSum=1.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRGJP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390338    GT:AD:DP:GQ:PL    0/1:5,9:14:99:317,0,153
7    38431644    rs79759611    G    GC    1328.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=2;HaplotypeScore=114.3501;IndelType=I;MQ=58.67;MQ0=0;QD=36.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462072    GT:AD:DP:GQ:PL    1/1:0,36:36:96.32:1371,96,0
7    38433986    rs2072507    C    T    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
7    38457688    rs10247761    C    A    447.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421537    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:481,39,0
7    38462154    rs57006229    G    GTATCTATC    700.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=181.7699;IndelType=I;MQ=59.29;MQ0=0;QD=23.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:20,8:30:30.09:742,30,0
7    38468463    rs2267808    C    T    138.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=23.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544070    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:171,15,0
7    38468695    rs2392572    C    T    2873.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_AMINO_ACID_CHANGE=M148I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_38468656_38469177;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421537    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2906,217,0
7    38469039    rs2215955    C    A    1269.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=V211F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_38468656_38469177;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353242    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1302,102,0
7    38469636    rs10253674    G    T    152.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:186,15,0
7    38471753    rs10232299    A    G    3516.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.189;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.292;QD=34.82;ReadPosRankSum=-1.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:1,100:101:99:3516,235,0
7    38471937    rs7811601    A    G    660.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:694,54,0
7    38502634    rs144982032    G    A    560.78    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.347;DB;DP=35;Dels=0.0;FS=8.198;HRun=1;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=0.314;QD=16.02;ReadPosRankSum=1.337;SNPEFF_AMINO_ACID_CHANGE=P277S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_38502575_38502713;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    0/1:17,18:35:99:591,0,499
7    38505025    rs722334    G    A    213.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
7    38530568    rs2043786    G    T    2224.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2257,175,0
7    38530807    rs3837078    T    TA    1770.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=7;HaplotypeScore=115.3267;IndelType=I;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:6,50:56:99:1813,150,0
7    38543371    rs6946268    C    T    1037.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1071,78,0
7    38574391    rs7785111    C    A    233.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325590    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:267,21,0
7    38780883    rs6951429    C    T    1730.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439468    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1763,126,0
7    38780924    rs6975410    T    C    2255    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=N105S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_38780884_38780951;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439468    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2288,166,0
7    38782897    rs10224856    A    G    398.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:431,33,0
7    38782905    rs10254354    C    T    383.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:416,33,0
7    38782951    rs10254567    G    A    1234.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,36:36:93.31:1268,93,0
7    38783376    rs10225415    A    T    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
7    38785061    rs78455274    C    T    834.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:867,63,0
7    38796570    rs2240350    G    A    1985.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.6;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=D496;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_38796438_38796582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395969    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2018,147,0
7    38796748    rs2392599    C    T    320.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462429    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:354,27,0
7    38810714    rs34241931    C    T    980.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.4;MQ0=0;QD=37.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466017    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1013,78,0
7    38810880    rs36019004    T    TA    621.11    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=51;FS=1.814;HRun=14;HaplotypeScore=331.4619;IndelType=I;MQ=54.56;MQ0=0;MQRankSum=0.378;QD=12.18;ReadPosRankSum=-0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466017    GT:AD:DP:GQ:PL    0/1:17,30:51:40.19:660,0,40
7    38813590    rs976352    A    G    614.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=26.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485955    GT:AD:DP:GQ:PL    1/1:0,23:23:57.15:647,57,0
7    38813597    rs976351    G    C    1098.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.96;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485955    GT:AD:DP:GQ:PL    1/1:0,31:31:87.25:1131,87,0
7    38813711    rs976350    C    T    5976.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=184;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9158;MQ=59.37;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485955    GT:AD:DP:GQ:PL    1/1:0,183:184:99:5977,457,0
7    38814042    rs34255211    T    C    125.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
7    38816441    rs1468347    A    G    292.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:326,27,0
7    38816487    rs4236355    G    A    255.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
7    38857205    rs40445    A    G    66.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418457    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:99,9,0
7    38857364    rs2072248    G    A    2512.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=33.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418457    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2545,190,0
7    38869708    rs7790054    C    T    3012.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310301    GT:AD:DP:GQ:PL    1/1:0,80:80:99:3045,229,0
7    39125413    rs1950001    T    G    2094.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403058    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2127,163,0
7    39243750    rs4507668    A    G    146.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=12.18;ReadPosRankSum=1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403058    GT:AD:DP:GQ:PL    0/1:6,6:12:99:176,0,207
7    39243963    rs35792719    T    A    446.04    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.925;DB;DP=31;Dels=0.0;FS=7.334;HRun=1;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;MQRankSum=0.973;QD=14.39;ReadPosRankSum=-0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403058    GT:AD:DP:GQ:PL    0/1:14,17:31:99:476,0,464
7    39243978    rs35489214    A    G    424.68    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=27;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.122;QD=15.73;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403058    GT:AD:DP:GQ:PL    0/1:12,15:27:99:455,0,376
7    39379698    rs5883685    CCA    C    225    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=2.419;DB;DP=28;FS=4.771;HRun=0;HaplotypeScore=92.2109;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=0.949;QD=8.04;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403058    GT:AD:DP:GQ:PL    0/1:20,8:28:99:264,0,791
7    39500352    rs885689    C    G    372.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403058    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:406,33,0
7    39611920    rs138927441    T    C    603.96    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.972;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=15.49;ReadPosRankSum=1.113;SNPEFF_AMINO_ACID_CHANGE=L99S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_39611876_39612480;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223273    GT:AD:DP:GQ:PL    0/1:18,21:39:99:634,0,567
7    40108855    rs11760551    C    T    456.38    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=28;Dels=0.0;FS=2.049;HRun=0;HaplotypeScore=4.8105;MQ=58.33;MQ0=0;MQRankSum=0.814;QD=16.3;ReadPosRankSum=2.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000181839    GT:AD:DP:GQ:PL    0/1:11,16:28:99:486,0,370
7    40228028    rs644966    A    T    277.27    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=11.9852;MQ=44.71;MQ0=0;MQRankSum=-1.03;QD=17.33;ReadPosRankSum=-1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309930    GT:AD:DP:GQ:PL    0/1:6,10:16:99:307,0,176
7    40228031    rs72318342    T    TC    155.05    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.332;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=245.0878;IndelType=I;MQ=43.42;MQ0=0;MQRankSum=0.922;QD=8.16;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309930    GT:AD:DP:GQ:PL    0/1:13,6:19:99:194,0,220
7    40314243    rs4637704    A    G    1940.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=58.71;MQ0=0;QD=35.94;SNPEFF_AMINO_ACID_CHANGE=L243;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_40314112_40314255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309930    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1974,147,0
7    40356315    rs10245165    A    T    1426.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=0.549;QD=34.79;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309930    GT:AD:DP:GQ:PL    1/1:1,40:41:89.79:1459,90,0
7    40708001    rs75682113    G    C    300.58    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.36;DB;DP=30;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=0.9159;MQ=59.23;MQ0=0;MQRankSum=-0.656;QD=10.02;ReadPosRankSum=0.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309930    GT:AD:DP:GQ:PL    0/1:18,12:30:99:331,0,507
7    40899967    rs2010706    G    C    1639.59    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=4.475;DB;DP=119;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=2.8647;MQ=59.81;MQ0=0;MQRankSum=0.506;QD=13.78;ReadPosRankSum=0.457;SNPEFF_AMINO_ACID_CHANGE=P361;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_40899915_40900230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401647    GT:AD:DP:GQ:PL    0/1:56,63:119:99:1670,0,1374
7    40900175    rs699484    A    G    87.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=7.3;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460466    GT:AD:DP:GQ:PL    0/1:8,4:12:99:118,0,253
7    41740067    rs111584790    A    AT    204.94    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=23;FS=0.0;HRun=11;HaplotypeScore=111.3927;IndelType=I;MQ=58.93;MQ0=0;MQRankSum=0.794;QD=8.91;ReadPosRankSum=-0.491;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_41739585_41740115;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INHBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242208    GT:AD:DP:GQ:PL    0/1:13,10:23:99:244,0,167
7    42004600    rs34089404    G    A    390.43    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.123;DB;DP=38;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.61;QD=10.27;ReadPosRankSum=0.674;SNPEFF_AMINO_ACID_CHANGE=Y1357;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_42000548_42006239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395925    GT:AD:DP:GQ:PL    0/1:21,17:38:99:420,0,753
7    42005836    rs61758978    C    G    103.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=10;Dels=0.0;FS=2.808;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.876;QD=10.35;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L945;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_42000548_42006239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395925    GT:AD:DP:GQ:PL    0/1:4,6:10:99:133,0,127
7    42006986    rs34658310    A    AT    219.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=10;FS=0.0;HRun=7;HaplotypeScore=22.4511;IndelType=I;MQ=57.66;MQ0=0;MQRankSum=0.48;QD=21.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395925    GT:AD:DP:GQ:PL    0/1:2,7:10:27.88:258,0,28
7    42007663    rs63350562    GA    G    308.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=24.0142;IndelType=D;MQ=60.0;MQ0=0;QD=30.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464291    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:351,27,0
7    42018391    rs17707162    C    T    136.41    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.4;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395925    GT:AD:DP:GQ:PL    0/1:6,5:11:99:166,0,211
7    42064852    rs846273    C    G    1705.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7021;MQ=59.55;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395925    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1739,135,0
7    42084728    rs699492    A    G    40.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-1.026;QD=8.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448703    GT:AD:DP:GQ:PL    0/1:3,2:5:69.20:71,0,69
7    42084829    rs699493    A    G    479.80    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.06;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=11.7;ReadPosRankSum=-0.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448703    GT:AD:DP:GQ:PL    0/1:23,18:41:99:510,0,852
7    42087966    rs846267    A    G    153.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=15.39;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448703    GT:AD:DP:GQ:PL    0/1:4,6:10:99:184,0,136
7    42088222    rs846266    T    C    615.06    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.863;DB;DP=47;Dels=0.0;FS=8.167;HRun=0;HaplotypeScore=0.6651;MQ=59.2;MQ0=0;MQRankSum=-0.848;QD=13.09;ReadPosRankSum=-0.335;SNPEFF_AMINO_ACID_CHANGE=T183A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_42088090_42088295;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395925    GT:AD:DP:GQ:PL    0/1:20,27:47:99:645,0,581
7    42262935    rs71793675    G    GA    202.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=85.8351;IndelType=I;MQ=56.25;MQ0=0;MQRankSum=-1.107;QD=12.68;ReadPosRankSum=-1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395925    GT:AD:DP:GQ:PL    1/1:4,12:16:13.73:245,14,0
7    42950640    rs643138    C    T    1052.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.43;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=R7Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_42950639_42950806;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421724    GT:AD:DP:GQ:PL    1/1:0,33:33:81.26:1086,81,0
7    42950845    rs644027    C    T    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350427    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    42957465    rs71008875    ATT    A    778.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=2;HaplotypeScore=61.7072;IndelType=D;MQ=60.63;MQ0=0;QD=45.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411875    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:820,51,0
7    42971508    rs66680815    TC    T    278.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=6;HaplotypeScore=24.2411;IndelType=D;MQ=59.22;MQ0=0;QD=27.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223321    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:320,30,0
7    42974340    rs598810    G    A    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223324    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    42974827    rs601057    A    C    291    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223324    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
7    42976789    rs630191    A    G    189.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=56.62;MQ0=0;QD=27.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223324    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:222,18,0
7    42977091    rs631132    G    A    1064.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=T161;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_42976921_42977456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223324    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1098,81,0
7    42977195    rs631561    G    A    901.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496564    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:935,69,0
7    42977243    rs631928    T    C    469.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432845    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:503,42,0
7    43157968    rs2190947    G    T    1092.05    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.145;DB;DP=81;Dels=0.0;FS=0.917;HRun=2;HaplotypeScore=2.2859;MQ=59.48;MQ0=0;MQRankSum=-0.356;QD=13.48;ReadPosRankSum=0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395891    GT:AD:DP:GQ:PL    0/1:41,40:81:99:1122,0,1388
7    43481974    rs11763383    C    T    40.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471043    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:71,6,0
7    43484310    rs73098706    T    C    139.74    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=12.7;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=S513;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43483814_43485169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265522    GT:AD:DP:GQ:PL    0/1:5,6:11:99:170,0,155
7    43485248    rs6960889    A    G    125.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265522    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:158,12,0
7    43495878    rs3214631    C    CT    776.18    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.844;DB;DP=44;FS=0.0;HRun=5;HaplotypeScore=101.67;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=0.79;QD=17.64;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265522    GT:AD:DP:GQ:PL    0/1:21,23:44:99:815,0,511
7    43506015    rs2304330    C    A    370.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=34;Dels=0.0;FS=3.846;HRun=1;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;MQRankSum=1.092;QD=10.9;ReadPosRankSum=-1.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265522    GT:AD:DP:GQ:PL    0/1:18,15:34:99:401,0,608
7    43506059    rs2304329    A    G    434.40    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.16;DB;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.15;MQ0=0;MQRankSum=0.118;QD=9.05;ReadPosRankSum=0.524;SNPEFF_AMINO_ACID_CHANGE=E901;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43506046_43506167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453890    GT:AD:DP:GQ:PL    0/1:26,22:48:99:464,0,792
7    43506158    rs2304328    T    C    739.88    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=48;Dels=0.0;FS=6.219;HRun=0;HaplotypeScore=0.8667;MQ=59.03;MQ0=0;MQRankSum=-0.693;QD=15.41;ReadPosRankSum=0.693;SNPEFF_AMINO_ACID_CHANGE=H934;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43506046_43506167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453890    GT:AD:DP:GQ:PL    0/1:22,26:48:99:770,0,630
7    43548832    rs74368380    T    C    252.06    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=18.0;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265522    GT:AD:DP:GQ:PL    0/1:5,9:14:99:282,0,165
7    43581309    rs11769030    A    G    36.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.1;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265522    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:66,0,70
7    43591955    rs4724220    A    G    736.83    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.172;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9732;MQ=59.62;MQ0=0;MQRankSum=0.691;QD=15.04;ReadPosRankSum=0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265522    GT:AD:DP:GQ:PL    0/1:23,26:49:99:767,0,711
7    43594471    rs9638972    C    T    88.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=8.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265522    GT:AD:DP:GQ:PL    0/1:6,4:10:99:118,0,182
7    43622806    rs10251937    T    C    111.06    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.467;QD=7.93;ReadPosRankSum=-2.267;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462448    GT:AD:DP:GQ:PL    0/1:9,5:14:99:141,0,277
7    43659182    rs6950861    G    A    1517.89    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.81;DB;DP=123;Dels=0.0;FS=1.57;HRun=0;HaplotypeScore=2.6912;MQ=59.62;MQ0=0;MQRankSum=0.088;QD=12.34;ReadPosRankSum=-1.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319357    GT:AD:DP:GQ:PL    0/1:62,59:123:99:1548,0,1682
7    43664280    rs1044141    A    G    975.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.385;DB;DP=66;Dels=0.0;FS=3.385;HRun=0;HaplotypeScore=2.8561;MQ=58.95;MQ0=0;MQRankSum=1.526;QD=14.77;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=K362E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43664117_43666385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK17A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319357    GT:AD:DP:GQ:PL    0/1:33,33:66:99:1005,0,979
7    43684803    rs2302031    C    G    193.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=13.81;ReadPosRankSum=0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C7orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418140    GT:AD:DP:GQ:PL    0/1:6,8:14:99:223,0,177
7    43685186    rs6957618    C    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C7orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418140    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
7    43810695    rs699511    A    G    312.91    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.838;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.11;MQ=58.59;MQ0=0;MQRankSum=1.211;QD=9.48;ReadPosRankSum=-0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLVRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265523    GT:AD:DP:GQ:PL    0/1:18,15:33:99:343,0,608
7    43810764    rs699512    G    A    407.28    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.666;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.338;QD=9.7;ReadPosRankSum=-0.636;SNPEFF_AMINO_ACID_CHANGE=A3T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43810737_43810769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLVRA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265523    GT:AD:DP:GQ:PL    0/1:27,15:42:99:437,0,834
7    43827414    rs849165    G    A    285.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.723;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9456;MQ=59.25;MQ0=0;MQRankSum=0.088;QD=11.43;ReadPosRankSum=1.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLVRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265523    GT:AD:DP:GQ:PL    0/1:15,10:25:99:316,0,360
7    43827771    rs2074795    C    T    92.61    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=10.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLVRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265523    GT:AD:DP:GQ:PL    0/1:5,4:9:99:123,0,150
7    43830888    rs1802846    T    C    728.25    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.113;DB;DP=59;Dels=0.0;FS=3.654;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.319;QD=12.34;ReadPosRankSum=0.506;SNPEFF_AMINO_ACID_CHANGE=L59;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43830848_43830967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLVRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265523    GT:AD:DP:GQ:PL    0/1:30,29:59:99:758,0,978
7    43843423    rs1131372    G    A    1878.41    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=0.303;DB;DP=117;Dels=0.0;FS=9.197;HRun=0;HaplotypeScore=2.574;MQ=60.0;MQ0=0;MQRankSum=-0.063;QD=16.05;ReadPosRankSum=-0.587;SNPEFF_AMINO_ACID_CHANGE=V203;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43843275_43843446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLVRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265523    GT:AD:DP:GQ:PL    0/1:55,62:117:99:1908,0,1604
7    43916128    rs10624354    C    CCT    197.02    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.756;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=70.0776;IndelType=I;MQ=56.85;MQ0=0;MQRankSum=-1.776;QD=13.13;ReadPosRankSum=-0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=URGCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426198    GT:AD:DP:GQ:PL    0/1:10,5:15:99:236,0,397
7    43916138    rs1468405    C    G    75.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.796;QD=5.07;ReadPosRankSum=-0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=URGCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426198    GT:AD:DP:GQ:PL    0/1:10,5:15:99:106,0,365
7    43916727    rs2232108    T    G    636.85    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.971;DB;DP=42;Dels=0.0;FS=1.496;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.43;QD=15.16;ReadPosRankSum=-1.036;SNPEFF_AMINO_ACID_CHANGE=M736L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43915505_43918859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=URGCP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223341    GT:AD:DP:GQ:PL    0/1:19,23:42:99:667,0,623
7    43917013    rs2232105    G    A    308.09    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.154;DB;DP=23;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.693;QD=13.4;ReadPosRankSum=-0.031;SNPEFF_AMINO_ACID_CHANGE=H640;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43915505_43918859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=URGCP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223341    GT:AD:DP:GQ:PL    0/1:11,12:23:99:338,0,346
7    43917274    rs2232103    A    G    512.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.292;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5783;MQ=59.45;MQ0=0;MQRankSum=0.369;QD=12.2;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=H553;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_43915505_43918859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=URGCP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223341    GT:AD:DP:GQ:PL    0/1:24,18:42:99:542,0,741
7    43927792    rs2730617    C    T    37.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=URGCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223341    GT:AD:DP:GQ:PL    0/1:2,2:4:67.77:68,0,69
7    43988188    rs62458690    C    T    932.29    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.845;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.7;MQ0=0;MQRankSum=0.354;QD=15.04;ReadPosRankSum=0.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UBE2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222402    GT:AD:DP:GQ:PL    0/1:30,32:62:99:962,0,967
7    43992426    rs1045398    C    G    79.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.25;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UBE2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443780    GT:AD:DP:GQ:PL    0/1:3,3:6:97.95:109,0,98
7    44005528    rs11766894    C    T    771.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=56;Dels=0.0;FS=1.072;HRun=0;HaplotypeScore=1.6208;MQ=58.71;MQ0=0;MQRankSum=1.342;QD=13.78;ReadPosRankSum=-0.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POLR2J4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422304    GT:AD:DP:GQ:PL    0/1:28,28:56:99:802,0,673
7    44009522    rs2527781    T    C    370.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.74;MQ0=0;MQRankSum=-1.741;QD=13.23;ReadPosRankSum=0.441;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004985.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418645    GT:AD:DP:GQ:PL    0/1:12,16:28:99:400,0,341
7    44012092    rs185445002    C    T    52.27    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.22;MQ0=1;MQRankSum=-0.421;QD=5.81;ReadPosRankSum=-0.421;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004985.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418645    GT:AD:DP:GQ:PL    0/1:5,4:9:72.52:82,0,73
7    44027322    rs10951747    G    A    107.72    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.36;MQ0=0;MQRankSum=0.876;QD=11.97;ReadPosRankSum=1.307;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004951.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420754    GT:AD:DP:GQ:PL    0/1:4,5:9:99:138,0,119
7    44027348    rs2330943    A    G    173.55    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.01;MQ0=0;MQRankSum=1.134;QD=14.46;ReadPosRankSum=-0.929;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004951.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420754    GT:AD:DP:GQ:PL    0/1:4,8:12:99:204,0,127
7    44039624    rs116244020    C    T    763.51    MQFilter40    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.421;DB;DP=79;Dels=0.0;FS=8.141;HRun=0;HaplotypeScore=1.2434;MQ=25.35;MQ0=0;MQRankSum=1.722;QD=9.66;ReadPosRankSum=0.26;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258704    GT:AD:DP:GQ:PL    0/1:39,40:79:99:794,0,704
7    44039818    rs4724271    G    A    184.53    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.6;MQ0=3;MQRankSum=-1.003;QD=11.53;ReadPosRankSum=1.312;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258704    GT:AD:DP:GQ:PL    0/1:6,10:16:99:215,0,103
7    44040998    rs4637720    C    T    206.64    MQFilter40    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.78;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.91;MQ0=0;MQRankSum=-3.182;QD=8.27;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258704    GT:AD:DP:GQ:PL    0/1:12,13:25:99:237,0,347
7    44044623    .    A    G    575.93    MQFilter40    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.801;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.18;MQ0=11;MQRankSum=1.517;QD=9.76;ReadPosRankSum=0.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258704    GT:AD:DP:GQ:PL    0/1:31,28:59:99:606,0,398
7    44044907    rs6961629    A    G    758.75    MQFilter40    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.08;MQ0=12;MQRankSum=1.154;QD=9.6;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258704    GT:AD:DP:GQ:PL    0/1:39,40:79:99:789,0,562
7    44065728    rs10232465    G    A    274    MQFilter40    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=0.85;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.46;MQ0=75;MQRankSum=0.976;QD=2.77;ReadPosRankSum=-0.409;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC004985.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424092    GT:AD:DP:GQ:PL    0/1:62,37:99:99:304,0,157
7    44065837    .    A    G    265.56    MQFilter40;QDFilter2    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.314;DP=250;Dels=0.0;FS=8.572;HRun=0;HaplotypeScore=0.0;MQ=11.21;MQ0=183;MQRankSum=-0.224;QD=1.06;ReadPosRankSum=0.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC004985.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424092    GT:AD:DP:GQ:PL    0/1:209,41:250:99:296,0,632
7    44069220    rs150606104    G    A    66.08    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.39;MQ0=0;MQRankSum=0.731;QD=13.22;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC017116.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510452    GT:AD:DP:GQ:PL    0/1:1,4:5:27.30:96,0,27
7    44080802    .    A    C    143.55    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.58;MQ0=0;MQRankSum=-1.134;QD=11.96;ReadPosRankSum=0.135;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DBNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411855    GT:AD:DP:GQ:PL    0/1:5,7:12:76.91:174,0,77
7    44089904    rs3812251    A    G    680.51    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.686;DB;DP=55;Dels=0.0;FS=1.236;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.543;QD=12.37;ReadPosRankSum=-0.882;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DBNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440166    GT:AD:DP:GQ:PL    0/1:25,30:55:99:711,0,723
7    44091343    rs17172569    A    G    105.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9258;MQ=57.39;MQ0=0;MQRankSum=0.956;QD=11.72;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DBNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439983    GT:AD:DP:GQ:PL    0/1:3,6:9:85.86:135,0,86
7    44098142    rs11773481    C    T    39.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.57;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DBNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423561    GT:AD:DP:GQ:PL    0/1:4,2:6:69.42:69,0,102
7    44099664    rs11552797    T    C    176.85    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.493;QD=13.6;ReadPosRankSum=-0.66;SNPEFF_AMINO_ACID_CHANGE=A252;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44099647_44099752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DBNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440166    GT:AD:DP:GQ:PL    0/1:6,7:13:99:207,0,175
7    44112873    rs3218660    G    T    674.68    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.744;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.33;MQ0=0;MQRankSum=0.636;QD=16.06;ReadPosRankSum=0.42;SNPEFF_AMINO_ACID_CHANGE=H439N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44111855_44113029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395831    GT:AD:DP:GQ:PL    0/1:15,27:42:99:705,0,441
7    44113656    rs3218661    T    C    128.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.226;QD=9.19;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492312    GT:AD:DP:GQ:PL    0/1:8,6:14:99:159,0,273
7    44121936    rs3218655    C    A    76.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.71;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=L34;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44121850_44122139;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242248    GT:AD:DP:GQ:PL    0/1:3,3:6:70.37:106,0,70
7    44147567    rs75138510    C    CG    173.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=36.8115;IndelType=I;MQ=60.0;MQ0=0;QD=21.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449162    GT:AD:DP:GQ:PL    1/1:2,6:8:15.05:215,15,0
7    44148553    rs2595701    A    G    181.77    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=14;Dels=0.0;FS=2.688;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=12.98;ReadPosRankSum=0.471;SNPEFF_AMINO_ACID_CHANGE=T332;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44148498_44148575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223357    GT:AD:DP:GQ:PL    0/1:6,8:14:99:212,0,139
7    44150119    rs45532335    C    T    284.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449162    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:318,24,0
7    44151009    rs62460065    C    T    290.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449162    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:323,24,0
7    44152119    rs11377645    A    AG    452.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=20.3975;IndelType=I;MQ=60.0;MQ0=0;QD=41.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434445    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:495,33,0
7    44152524    .    A    AG    950.63    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.549;DP=53;FS=0.0;HRun=4;HaplotypeScore=206.1125;IndelType=I;MQ=59.33;MQ0=0;MQRankSum=-0.88;QD=17.94;ReadPosRankSum=-0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431035    GT:AD:DP:GQ:PL    0/1:25,28:53:99:990,0,626
7    44152549    rs41279612    G    A    941.44    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.264;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.33;MQ0=0;MQRankSum=0.809;QD=13.64;ReadPosRankSum=0.433;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431035    GT:AD:DP:GQ:PL    0/1:33,35:69:99:971,0,948
7    44153780    rs13928    A    G    1170.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=23.41;SNPEFF_AMINO_ACID_CHANGE=K1133E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44153193_44154159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223357    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1203,99,0
7    44153825    rs13898    G    A    678.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.165;DB;DP=48;Dels=0.0;FS=6.235;HRun=1;HaplotypeScore=2.2859;MQ=58.05;MQ0=0;MQRankSum=-0.077;QD=14.13;ReadPosRankSum=-1.88;SNPEFF_AMINO_ACID_CHANGE=V1148I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44153193_44154159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223357    GT:AD:DP:GQ:PL    0/1:24,24:48:99:708,0,718
7    44154865    rs5883885    A    AG    2808.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.0;HRun=1;HaplotypeScore=145.6673;IndelType=I;MQ=60.26;MQ0=0;QD=43.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223357    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2850,193,0
7    44157770    rs55757050    G    GC    346.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=24.6353;IndelType=I;MQ=61.19;MQ0=0;QD=38.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223357    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:389,27,0
7    44157825    rs3217964    T    C    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223357    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:69,0,68
7    44178626    rs1008384    A    G    176.73    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.558;DB;DP=29;Dels=0.0;FS=1.757;HRun=4;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.408;QD=6.09;ReadPosRankSum=0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447951    GT:AD:DP:GQ:PL    0/1:18,11:29:99:207,0,560
7    44178743    rs882020    C    T    111.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=11.761;HRun=4;HaplotypeScore=1.7998;MQ=57.28;MQ0=0;MQRankSum=0.55;QD=15.9;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447951    GT:AD:DP:GQ:PL    0/1:3,4:7:59.74:141,0,60
7    44180079    rs5883888    A    AG    688.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=42.7293;IndelType=I;MQ=60.54;MQ0=0;QD=34.44;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_44179922_44180116;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL7;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000447951    GT:AD:DP:GQ:PL    1/1:4,16:20:51.17:731,51,0
7    44180226    rs55908146    A    G    145.73    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336642    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:176,0,21
7    44185088    rs2908274    G    A    90.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.03;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473353    GT:AD:DP:GQ:PL    0/1:2,4:6:29.74:120,0,30
7    44185955    rs76323047    A    G    33.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.08;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345378    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:63,0,33
7    44189274    rs2268575    T    C    215.99    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=24.0;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476008    GT:AD:DP:GQ:PL    0/1:2,7:9:47.27:246,0,47
7    44189321    rs2268574    A    G    701.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476008    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:735,63,0
7    44190468    rs2268573    T    G    676.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476008    GT:AD:DP:GQ:PL    1/1:0,22:22:57.14:709,57,0
7    44197583    rs2070971    G    T    289.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.091;DB;DP=28;Dels=0.0;FS=5.787;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=-0.998;QD=10.32;ReadPosRankSum=-1.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345378    GT:AD:DP:GQ:PL    0/1:16,12:28:99:319,0,572
7    44198944    rs76717641    G    GC    217.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=42.1957;IndelType=I;MQ=41.96;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403799    GT:AD:DP:GQ:PL    1/1:1,5:6:18.06:260,18,0
7    44247258    rs3824065    C    T    123.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YKT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223369    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
7    44250826    rs2072439    G    A    94.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YKT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463014    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
7    44259706    rs1065359    G    A    306.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=N170;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44259659_44259893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425809    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:339,27,0
7    44259871    rs1127065    C    T    567.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=P115;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44259659_44259893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425809    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:600,48,0
7    44266077    rs10951758    G    A    165.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258682    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
7    44268785    rs917791    A    G    34.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=8.73;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258682    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:65,0,32
7    44272314    rs5883896    G    GC    228.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=11.016;IndelType=I;MQ=60.0;MQ0=0;QD=38.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258682    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:270,18,0
7    44281475    rs2075073    T    A    205.96    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.391;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=12.12;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415369    GT:AD:DP:GQ:PL    0/1:10,7:17:99:236,0,368
7    44281579    rs62459100    A    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415369    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
7    44281702    rs35663812    A    G    130.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=18.63;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415369    GT:AD:DP:GQ:PL    0/1:2,5:7:63.81:160,0,64
7    44282868    rs11542228    A    G    347.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.019;DB;DP=26;Dels=0.0;FS=3.862;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=13.38;ReadPosRankSum=1.006;SNPEFF_AMINO_ACID_CHANGE=P194;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44282849_44282932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258682    GT:AD:DP:GQ:PL    0/1:13,13:26:99:378,0,354
7    44282877    rs11542227    A    G    382.11    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.01;DB;DP=29;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.161;QD=13.18;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=Y191;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44282849_44282932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258682    GT:AD:DP:GQ:PL    0/1:15,14:29:99:412,0,339
7    44284564    rs2075069    A    G    150.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=15.08;ReadPosRankSum=1.568;SNPEFF_AMINO_ACID_CHANGE=H155;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44284488_44284614;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421607    GT:AD:DP:GQ:PL    0/1:4,6:10:99:181,0,103
7    44294380    rs73096000    C    T    95.30    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.7974;MQ=40.65;MQ0=0;MQRankSum=0.731;QD=19.06;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258682    GT:AD:DP:GQ:PL    0/1:1,4:5:18.39:125,0,18
7    44364862    rs111242776    C    G    78.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258682    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:110,9,0
7    44442296    rs1473114    A    C    124.70    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.436;DB;DP=20;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.087;QD=6.24;ReadPosRankSum=-1.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464812    GT:AD:DP:GQ:PL    0/1:15,5:20:99:155,0,492
7    44553238    rs217434    A    G    513.97    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.766;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.07;MQ0=0;MQRankSum=0.149;QD=14.68;ReadPosRankSum=-3.317;SNPEFF_AMINO_ACID_CHANGE=V1223;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44552960_44553248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546276    GT:AD:DP:GQ:PL    0/1:17,18:35:99:544,0,583
7    44555199    rs217429    A    C    76.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289547    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
7    44571657    rs55837134    G    A    752.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.741;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.008;QD=18.81;ReadPosRankSum=0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423141    GT:AD:DP:GQ:PL    0/1:16,24:40:99:783,0,439
7    44579180    rs2072183    G    C    1207.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.29;MQ0=0;QD=36.59;SNPEFF_AMINO_ACID_CHANGE=L272;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44578416_44579941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289547    GT:AD:DP:GQ:PL    1/1:0,33:33:96.29:1240,96,0
7    44606098    rs6656    C    T    534.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=V110;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44605737_44606123;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448192    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:568,45,0
7    44609752    rs2304373    C    T    167.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=11.16;ReadPosRankSum=-1.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479440    GT:AD:DP:GQ:PL    0/1:9,6:15:99:197,0,244
7    44610229    rs2289054    C    A    259.32    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.648;QD=17.29;ReadPosRankSum=0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479440    GT:AD:DP:GQ:PL    0/1:6,9:15:99:289,0,200
7    44611009    rs3793250    C    T    174.57    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=11.64;ReadPosRankSum=-0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479440    GT:AD:DP:GQ:PL    0/1:8,7:15:99:205,0,252
7    44611544    rs3765021    T    C    38.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.65;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479440    GT:AD:DP:GQ:PL    0/1:3,2:5:68.24:68,0,107
7    44611890    rs2289055    A    G    230.69    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=25.63;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479440    GT:AD:DP:GQ:PL    0/1:1,8:9:4.57:260,0,5
7    44612229    rs2289057    G    A    1641.25    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.943;DB;DP=116;Dels=0.0;FS=2.45;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.115;QD=14.15;ReadPosRankSum=-0.305;SNPEFF_AMINO_ACID_CHANGE=D166;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44612173_44612343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258772    GT:AD:DP:GQ:PL    0/1:61,55:116:99:1671,0,1740
7    44612347    rs217374    G    C    2175.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2772;MQ=59.63;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258772    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2209,168,0
7    44612753    rs217372    T    C    583.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=32.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289577    GT:AD:DP:GQ:PL    1/1:0,18:18:51.12:617,51,0
7    44612965    rs1434959    C    G    138.63    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=19.8;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289577    GT:AD:DP:GQ:PL    0/1:2,5:7:57.57:169,0,58
7    44612992    rs1434960    T    C    191.82    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=23.98;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289577    GT:AD:DP:GQ:PL    0/1:2,6:8:50.49:222,0,50
7    44619302    rs217361    T    C    566.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444131    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:600,45,0
7    44620836    rs8580    C    A    1903.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.85;MQ0=0;QD=31.72;SNPEFF_AMINO_ACID_CHANGE=R114;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44620692_44620838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419520    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1936,144,0
7    44663909    .    TG    T    110    QDFilter2    AB=0.915;AC=1;AF=0.50;AN=2;BaseQRankSum=4.182;DP=65;FS=45.055;HRun=1;HaplotypeScore=451.3004;IndelType=D;MQ=49.11;MQ0=0;MQRankSum=-1.989;QD=1.69;ReadPosRankSum=-1.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222673    GT:AD:DP:GQ:PL    0/1:59,6:65:99:149,0,653
7    44735538    .    G    A    105.65    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.09;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222673    GT:AD:DP:GQ:PL    0/1:3,4:7:97.30:136,0,97
7    44737679    rs17133935    A    G    91.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.18;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222673    GT:AD:DP:GQ:PL    0/1:5,4:9:99:122,0,181
7    44737716    rs3216978    T    TAAG    442.56    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=41.1542;IndelType=I;MQ=56.04;MQ0=0;MQRankSum=-0.38;QD=36.88;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222673    GT:AD:DP:GQ:PL    0/1:5,7:12:99:482,0,244
7    44737922    rs3213662    G    A    95.68    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=10.63;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222673    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,182
7    44747514    rs61756583    C    T    344.60    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=33;Dels=0.0;FS=3.477;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.475;QD=10.44;ReadPosRankSum=0.551;SNPEFF_AMINO_ACID_CHANGE=T1007;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44747478_44747877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447398    GT:AD:DP:GQ:PL    0/1:18,15:33:99:375,0,577
7    44747578    rs2070607    G    A    396.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=30;Dels=0.0;FS=1.455;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.166;QD=13.21;ReadPosRankSum=-1.784;SNPEFF_AMINO_ACID_CHANGE=V1014I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44747478_44747927;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449767    GT:AD:DP:GQ:PL    0/1:15,15:30:99:426,0,410
7    44747589    rs61756584    C    T    409.88    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.489;DB;DP=31;Dels=0.0;FS=1.446;HRun=2;HaplotypeScore=1.9048;MQ=60.0;MQ0=0;MQRankSum=-0.456;QD=13.22;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=N1017;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44747478_44747927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449767    GT:AD:DP:GQ:PL    0/1:17,14:31:99:440,0,499
7    44798814    .    C    CT    1895.20    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.956;DP=89;FS=4.78;HRun=2;HaplotypeScore=197.4628;IndelType=I;MQ=58.96;MQ0=0;MQRankSum=0.527;QD=21.29;ReadPosRankSum=1.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416856    GT:AD:DP:GQ:PL    0/1:38,51:89:99:1934,0,1132
7    44802401    rs4720479    A    C    2309.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DB;DP=87;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=5.2551;MQ=57.57;MQ0=0;MQRankSum=-1.469;QD=26.55;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265346    GT:AD:DP:GQ:PL    1/1:2,85:87:99:2342,199,0
7    44803944    rs79784917    G    T    97.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.825;QD=8.13;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265346    GT:AD:DP:GQ:PL    0/1:8,4:12:99:128,0,268
7    44836268    rs8177826    C    G    294.85    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.97;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=53.71;MQ0=0;MQRankSum=-0.765;QD=10.92;ReadPosRankSum=0.398;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244636    GT:AD:DP:GQ:PL    0/1:10,17:27:99:325,0,248
7    44840864    rs10249442    G    A    652.63    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.26;DB;DP=40;Dels=0.0;FS=1.941;HRun=1;HaplotypeScore=1.5661;MQ=43.07;MQ0=0;MQRankSum=-1.968;QD=16.32;ReadPosRankSum=1.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PPIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451562    GT:AD:DP:GQ:PL    0/1:18,22:40:99:683,0,535
7    44873982    rs56252693    G    A    64.66    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=6.47;ReadPosRankSum=-1.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2AFV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446531    GT:AD:DP:GQ:PL    0/1:7,3:10:94.65:95,0,264
7    44924627    rs6966024    A    C    180.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=A107;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_44915896_44924960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PURB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395699    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:214,18,0
7    45004063    rs7792760    T    C    1611.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=58.66;MQ0=0;QD=31.0;SNPEFF_AMINO_ACID_CHANGE=Q861R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45004014_45004118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO1G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258787    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1645,129,0
7    45009325    rs3735484    G    A    508.94    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.28;DB;DP=40;Dels=0.0;FS=16.194;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.26;QD=12.72;ReadPosRankSum=0.439;SNPEFF_AMINO_ACID_CHANGE=H494;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45009304_45009474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258787    GT:AD:DP:GQ:PL    0/1:23,17:40:99:539,0,600
7    45009341    rs3735485    A    G    1203.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=30.08;SNPEFF_AMINO_ACID_CHANGE=M489T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45009304_45009474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO1G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258787    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1236,105,0
7    45009723    rs11555636    G    A    752.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_AMINO_ACID_CHANGE=N416;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45009639_45009753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MYO1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258787    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:785,57,0
7    45018263    rs10951781    G    A    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438705    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,71
7    45024876    rs6463256    A    G    237.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438705    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
7    45067267    rs2289365    G    C    354.84    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.045;DB;DP=32;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.475;QD=11.09;ReadPosRankSum=-0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258781    GT:AD:DP:GQ:PL    0/1:18,14:32:99:385,0,517
7    45103481    rs2304689    A    G    363.08    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.636;DB;DP=35;Dels=0.0;FS=16.72;HRun=0;HaplotypeScore=1.9956;MQ=60.0;MQ0=0;MQRankSum=0.139;QD=10.37;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258781    GT:AD:DP:GQ:PL    0/1:19,16:35:99:393,0,566
7    45103771    rs6971403    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258781    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    45107868    rs7788412    A    G    239.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=19.94;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476594    GT:AD:DP:GQ:PL    0/1:4,8:12:99:269,0,128
7    45113170    rs2289367    G    A    314.05    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3001;MQ=56.62;MQ0=0;MQRankSum=0.528;QD=14.95;ReadPosRankSum=0.035;SNPEFF_AMINO_ACID_CHANGE=T208;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45113059_45113170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000474617    GT:AD:DP:GQ:PL    0/1:10,11:21:99:344,0,304
7    45113289    rs2289369    C    T    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.4;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470837    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:70,0,30
7    45120453    rs10264280    C    T    154.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.014;DB;DP=18;Dels=0.0;FS=4.634;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.234;QD=8.6;ReadPosRankSum=1.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258781    GT:AD:DP:GQ:PL    0/1:12,6:18:99:185,0,370
7    45120704    rs2304692    C    T    872.44    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=51;Dels=0.0;FS=10.746;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.234;QD=17.11;ReadPosRankSum=-0.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258781    GT:AD:DP:GQ:PL    0/1:24,27:51:99:902,0,594
7    45122464    rs10243185    A    C    115.98    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=16.57;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=D1105E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:3,4:7:98.79:146,0,99
7    45122723    rs61740895    G    A    142.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=14.2;ReadPosRankSum=0.676;SNPEFF_AMINO_ACID_CHANGE=A1019V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:5,5:10:99:172,0,145
7    45123685    .    C    T    53.21    MQFilter40;QDFilter2    AB=0.919;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.819;DP=87;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=7.7;MQ0=70;MQRankSum=2.583;QD=0.61;ReadPosRankSum=-0.693;SNPEFF_AMINO_ACID_CHANGE=K698;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:79,7:87:59.01:83,0,59
7    45123859    rs72497819    G    A    117.19    MQFilter40    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=51;Dels=0.0;FS=4.137;HRun=0;HaplotypeScore=0.5784;MQ=37.37;MQ0=11;MQRankSum=-3.25;QD=2.3;ReadPosRankSum=-0.267;SNPEFF_AMINO_ACID_CHANGE=S640;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:32,19:51:99:147,0,750
7    45123925    rs61740886    C    T    128.15    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.808;DB;DP=63;Dels=0.0;FS=17.31;HRun=3;HaplotypeScore=0.9867;MQ=42.17;MQ0=4;MQRankSum=-0.555;QD=2.03;ReadPosRankSum=-3.163;SNPEFF_AMINO_ACID_CHANGE=K618;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:52,11:63:99:158,0,1321
7    45123937    rs112035890    T    C    257.16    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=1.717;DB;DP=63;Dels=0.0;FS=15.182;HRun=0;HaplotypeScore=0.0;MQ=45.63;MQ0=4;MQRankSum=-0.645;QD=4.08;ReadPosRankSum=-1.426;SNPEFF_AMINO_ACID_CHANGE=S614;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:47,16:63:99:287,0,1188
7    45124008    rs7777835    T    C    959.86    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=3.064;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=54.03;MQ0=0;MQRankSum=-3.409;QD=16.27;ReadPosRankSum=-0.09;SNPEFF_AMINO_ACID_CHANGE=K591E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:27,31:59:99:990,0,809
7    45124286    rs3735494    A    G    370.83    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=32;Dels=0.0;FS=4.467;HRun=0;HaplotypeScore=2.9839;MQ=58.55;MQ0=0;MQRankSum=-0.148;QD=11.59;ReadPosRankSum=1.164;SNPEFF_AMINO_ACID_CHANGE=V498A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:18,13:32:99:401,0,484
7    45124465    rs3735495    A    T    108.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=10.81;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=D438E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45121707_45125711;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACAD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000490531    GT:AD:DP:GQ:PL    0/1:4,6:10:99:138,0,106
7    45142145    rs1992292    T    C    379.73    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.967;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.369;QD=13.56;ReadPosRankSum=-0.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461363    GT:AD:DP:GQ:PL    0/1:13,15:28:99:410,0,399
7    45142834    rs2289374    G    C    80.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461363    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
7    45143108    rs2119056    T    C    100.82    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461363    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:131,0,27
7    45143892    rs6973982    A    G    564.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.716;DB;DP=44;Dels=0.0;FS=2.694;HRun=1;HaplotypeScore=0.8941;MQ=58.95;MQ0=0;MQRankSum=-0.176;QD=12.83;ReadPosRankSum=0.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461363    GT:AD:DP:GQ:PL    0/1:22,22:44:99:594,0,665
7    45144113    rs41280672    C    T    901.33    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=67;Dels=0.0;FS=2.105;HRun=0;HaplotypeScore=4.202;MQ=59.31;MQ0=0;MQRankSum=-0.391;QD=13.45;ReadPosRankSum=-1.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461363    GT:AD:DP:GQ:PL    0/1:35,32:67:99:931,0,996
7    45144494    rs2289376    T    C    619.97    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.086;DB;DP=44;Dels=0.0;FS=5.803;HRun=4;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=14.09;ReadPosRankSum=-1.746;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471142    GT:AD:DP:GQ:PL    0/1:16,28:44:99:650,0,430
7    45148667    rs2304693    G    A    774.44    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=51;Dels=0.0;FS=1.07;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.941;QD=15.19;ReadPosRankSum=0.903;SNPEFF_AMINO_ACID_CHANGE=P3L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45148426_45148682;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBRG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461363    GT:AD:DP:GQ:PL    0/1:22,29:51:99:804,0,710
7    45148773    rs2304694    C    A    562.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.285;DB;DP=44;Dels=0.0;FS=2.709;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.2;QD=12.78;ReadPosRankSum=-1.355;SNPEFF_AMINO_ACID_CHANGE=A22S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45148426_45148886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBRG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258770    GT:AD:DP:GQ:PL    0/1:24,20:44:99:592,0,783
7    45697297    rs2471231    T    C    48.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=3.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297323    GT:AD:DP:GQ:PL    1/1:0,13:13:8.99:81,9,0
7    45701762    rs61729596    C    T    230.25    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=15.911;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=16.45;ReadPosRankSum=0.386;SNPEFF_AMINO_ACID_CHANGE=F293;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45701658_45701813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432715    GT:AD:DP:GQ:PL    0/1:6,8:14:99:260,0,212
7    45703971    rs1042009    G    A    208.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=T338;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45703888_45704271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432715    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
7    45724696    rs2461106    T    C    282.36    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.754;DB;DP=40;Dels=0.0;FS=1.547;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.924;QD=7.06;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297323    GT:AD:DP:GQ:PL    0/1:27,13:40:99:312,0,853
7    45726452    rs2461122    G    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468353    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    45743128    rs2247685    T    G    1141.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297323    GT:AD:DP:GQ:PL    1/1:0,33:33:93.28:1175,93,0
7    45743403    rs2461114    G    A    1060.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297323    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1093,81,0
7    45743867    rs2247709    G    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297323    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    45776721    rs2471229    T    C    124.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEPT7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338231    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
7    45929930    rs144868613    T    G    32.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.79;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275525    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:62,0,33
7    45930229    rs150765696    T    C    1093.09    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DB;DP=75;Dels=0.0;FS=9.691;HRun=1;HaplotypeScore=0.9967;MQ=59.69;MQ0=0;MQRankSum=-1.836;QD=14.57;ReadPosRankSum=-0.75;SNPEFF_AMINO_ACID_CHANGE=S144;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_45930147_45930316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275525    GT:AD:DP:GQ:PL    0/1:34,41:75:99:1123,0,1070
7    45954692    rs10255707    T    C    64.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448817    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
7    45957055    rs2471551    G    C    286.08    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.359;QD=17.88;ReadPosRankSum=0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275521    GT:AD:DP:GQ:PL    0/1:5,11:16:99:316,0,149
7    46732428    rs700747    A    G    2992.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.25;MQ0=0;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=V51A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_46732409_46732567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC011294.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451905    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3026,235,0
7    46736733    rs79637078    GA    G    246.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=23.1872;IndelType=D;MQ=61.19;MQ0=0;QD=27.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC011294.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469937    GT:AD:DP:GQ:PL    1/1:1,8:9:24.07:288,24,0
7    47092580    rs6961834    T    G    121.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC004870.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412996    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
7    47092914    rs7779776    C    G    558.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.4;MQ0=0;QD=34.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC004870.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412996    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:591,48,0
7    47093009    rs7799055    T    C    644.78    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=48;Dels=0.0;FS=4.891;HRun=3;HaplotypeScore=0.0;MQ=57.94;MQ0=0;MQRankSum=1.032;QD=13.43;ReadPosRankSum=-0.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC004870.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412996    GT:AD:DP:GQ:PL    0/1:25,23:48:99:675,0,801
7    47242645    rs4720584    A    G    113.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.86;MQ0=0;QD=22.73;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:146,12,0
7    47317510    rs3750163    G    A    129.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545849    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
7    47319723    rs4720590    C    T    1756.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=35.14;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1790,135,0
7    47319852    rs6971754    C    T    1311.18    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=64;Dels=0.0;FS=9.59;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.268;QD=20.49;ReadPosRankSum=0.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    0/1:23,41:64:99:1341,0,641
7    47323154    rs3829000    A    G    213.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
7    47323456    rs3750164    A    G    1870.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=28.34;SNPEFF_AMINO_ACID_CHANGE=N1072;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47323295_47323463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355730    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1904,147,0
7    47332238    rs884824    A    G    33.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
7    47336893    rs5883997    C    CT    335.23    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.76;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=48.6157;IndelType=I;MQ=60.13;MQ0=0;MQRankSum=2.202;QD=14.58;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    0/1:13,10:23:99:374,0,421
7    47407888    rs2255749    G    A    854.87    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.688;DB;DP=68;Dels=0.0;FS=1.493;HRun=0;HaplotypeScore=0.8667;MQ=59.67;MQ0=0;MQRankSum=-1.885;QD=12.39;ReadPosRankSum=-1.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450444    GT:AD:DP:GQ:PL    0/1:35,32:68:99:885,0,1063
7    47408029    rs2255744    A    G    2943.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=G194;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47407962_47409218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545849    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2977,238,0
7    47408974    rs1534136    T    A    1418.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=37.33;SNPEFF_AMINO_ACID_CHANGE=A423;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47407962_47409218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1452,105,0
7    47436558    rs2177795    A    C    588.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.78;MQ0=0;QD=30.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442536    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:622,51,0
7    47451295    rs834607    A    G    122.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
7    47481602    rs11763044    G    A    1545.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_AMINO_ACID_CHANGE=R103W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47481601_47481653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538633    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1579,117,0
7    47546375    rs334496    C    T    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.48;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,72
7    47546547    rs334497    G    A    121.27    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.713;DB;DP=20;Dels=0.0;FS=6.107;HRun=11;HaplotypeScore=2.4344;MQ=58.84;MQ0=0;MQRankSum=0.951;QD=6.06;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    0/1:13,7:20:99:151,0,316
7    47568718    rs10261525    C    T    2864.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_AMINO_ACID_CHANGE=A11T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47568634_47568745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450444    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2897,217,0
7    47578772    rs334506    T    C    585.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_47578673_47578875;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450444    GT:AD:DP:GQ:PL    1/1:0,21:21:51.13:619,51,0
7    47596775    rs615300    C    T    151.34    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311160    GT:AD:DP:GQ:PL    0/1:2,6:8:62.45:181,0,62
7    47805580    rs6463441    C    T    165.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436444    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:198,15,0
7    47805746    rs73097433    A    C    700.07    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.852;DB;DP=58;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.565;QD=12.07;ReadPosRankSum=0.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436444    GT:AD:DP:GQ:PL    0/1:31,27:58:99:730,0,895
7    47835814    rs6943728    G    A    899.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258776    GT:AD:DP:GQ:PL    1/1:0,27:27:69.20:932,69,0
7    47840510    rs1466203    T    C    639.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258776    GT:AD:DP:GQ:PL    1/1:0,21:21:57.16:672,57,0
7    47847679    rs1074780    G    A    118.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462350    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
7    47853498    rs6463449    C    T    284.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258776    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:317,24,0
7    47859239    rs3757379    C    A    361.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=58.45;MQ0=0;QD=24.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    1/1:0,15:15:30.10:394,30,0
7    47869751    rs6463451    C    T    652.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:685,51,0
7    47872845    rs921634    A    G    266.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.59;SNPEFF_AMINO_ACID_CHANGE=P2060;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47872688_47872850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:299,24,0
7    47884555    rs13237611    A    G    376.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:410,33,0
7    47894952    rs11441954    C    CT    312.58    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=70.6821;IndelType=I;MQ=58.63;MQ0=0;MQRankSum=-0.635;QD=18.39;ReadPosRankSum=1.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:9,8:17:99:352,0,224
7    47898222    rs34177211    T    TG    263.70    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.463;DB;DP=25;FS=2.84;HRun=3;HaplotypeScore=54.8067;IndelType=I;MQ=59.25;MQ0=0;MQRankSum=-0.764;QD=10.55;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:16,9:25:99:303,0,493
7    47898561    rs60527187    C    T    120.19    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=17.17;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:2,5:7:59.30:150,0,59
7    47904737    rs1554495    G    A    176.50    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=16.05;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:5,6:11:99:206,0,166
7    47906335    rs72601619    A    G    146.09    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=16.23;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:4,5:9:99:176,0,141
7    47913412    rs72601625    C    T    77.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.5;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:2,3:5:67.19:107,0,67
7    47913579    rs1470859    T    C    620.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=K1272E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47913497_47913608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:653,51,0
7    47913676    rs75976776    C    T    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.82;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:4,2:6:64.93:65,0,146
7    47917087    rs72601626    C    T    1046.71    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=77;Dels=0.0;FS=3.305;HRun=0;HaplotypeScore=2.2312;MQ=59.7;MQ0=0;MQRankSum=-0.779;QD=13.59;ReadPosRankSum=0.408;SNPEFF_AMINO_ACID_CHANGE=P1221;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47917087_47917229;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1077,0,1051
7    47925331    rs10274334    C    G    917.24    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=3.595;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.547;QD=15.04;ReadPosRankSum=1.553;SNPEFF_AMINO_ACID_CHANGE=R1053P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47925284_47925652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:29,31:60:99:947,0,853
7    47927403    rs884596    G    C    88.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    47930287    .    T    C    276.58    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DP=19;Dels=0.0;FS=9.863;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=14.56;ReadPosRankSum=-0.867;SNPEFF_AMINO_ACID_CHANGE=D843G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47930140_47930361;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:8,11:19:99:307,0,274
7    47943953    rs11766212    C    T    170.55    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.904;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=57.97;MQ0=0;MQRankSum=-0.29;QD=7.42;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:15,8:23:99:201,0,471
7    47947863    rs1474283    T    C    743.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:776,63,0
7    47968927    rs2686817    C    A    2534.27    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=176;Dels=0.0;FS=7.712;HRun=2;HaplotypeScore=1.6584;MQ=59.61;MQ0=0;MQRankSum=-0.312;QD=14.4;ReadPosRankSum=-0.738;SNPEFF_AMINO_ACID_CHANGE=V312F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47968801_47969123;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:89,86:176:99:2564,0,2635
7    47971326    rs939903    A    C    245.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
7    47971348    rs17711348    T    C    119.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.79;MQ=53.95;MQ0=0;MQRankSum=-0.467;QD=10.0;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:6,6:12:99:150,0,214
7    47971575    rs885337    A    G    1177.53    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.991;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.026;MQ=59.48;MQ0=0;MQRankSum=0.584;QD=13.23;ReadPosRankSum=0.333;SNPEFF_AMINO_ACID_CHANGE=C159;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_47971533_47971653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:41,48:89:99:1208,0,1111
7    47971866    rs939904    C    T    103.31    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.66;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:1,4:5:21.95:133,0,22
7    47976287    rs2708878    A    G    63.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.63;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:93,0,67
7    47976357    rs36101306    A    T    174.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=17.5;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:4,6:10:99:205,0,128
7    47979922    rs2708913    A    G    508.50    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=46;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=7.7469;MQ=58.51;MQ0=0;MQRankSum=0.79;QD=10.82;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289672    GT:AD:DP:GQ:PL    0/1:21,25:46:99:538,0,554
7    48004962    rs1056663    C    T    474.59    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.867;QD=9.13;ReadPosRankSum=1.042;SNPEFF_AMINO_ACID_CHANGE=A257;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48004763_48005035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HUS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432325    GT:AD:DP:GQ:PL    0/1:32,20:52:99:505,0,852
7    48005122    rs2037483    G    A    131.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=10.92;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432627    GT:AD:DP:GQ:PL    0/1:7,5:12:99:161,0,241
7    48008666    rs3176582    A    G    72.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432627    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
7    48017965    rs2242477    C    T    555.21    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.96;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.952;QD=13.54;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258774    GT:AD:DP:GQ:PL    0/1:21,20:41:99:585,0,682
7    48017989    rs2242478    T    C    796.40    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.916;DB;DP=52;Dels=0.0;FS=2.304;HRun=0;HaplotypeScore=0.9933;MQ=59.56;MQ0=0;MQRankSum=0.604;QD=15.32;ReadPosRankSum=-0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258774    GT:AD:DP:GQ:PL    0/1:27,25:52:99:826,0,878
7    48018455    rs2242479    T    A    186.92    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.173;DB;DP=21;Dels=0.0;FS=2.141;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.533;QD=8.9;ReadPosRankSum=-1.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258774    GT:AD:DP:GQ:PL    0/1:12,9:21:99:217,0,395
7    48027136    rs5884032    CT    C    656.57    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=3.01;DB;DP=92;FS=0.0;HRun=11;HaplotypeScore=317.6149;IndelType=D;MQ=59.37;MQ0=0;MQRankSum=0.62;QD=7.14;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    0/1:54,36:92:99:696,0,712
7    48028512    rs3736547    G    C    370.16    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.899;DB;DP=39;Dels=0.0;FS=15.47;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.043;QD=9.49;ReadPosRankSum=-0.728;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    0/1:23,16:39:99:400,0,795
7    48035446    rs13230023    C    T    88.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
7    48035893    rs2708899    T    C    251.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    1/1:0,11:11:27.05:285,27,0
7    48045367    rs12702405    T    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    48045416    rs11767002    C    T    86.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
7    48045447    rs66650652    T    TC    157.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=9;HaplotypeScore=22.8753;IndelType=I;MQ=60.0;MQ0=0;QD=26.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:199,18,0
7    48046714    rs1574242    G    A    498.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:531,39,0
7    48068258    rs7357251    G    C    86.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SUN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297325    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
7    48081095    rs10951942    G    T    2941    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7845;MQ=60.0;MQ0=0;MQRankSum=-1.136;QD=31.62;ReadPosRankSum=-0.987;SNPEFF_AMINO_ACID_CHANGE=A119S;SNPEFF_CODON_CHANGE=Gcg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48080931_48081116;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420324    GT:AD:DP:GQ:PL    1/1:1,92:93:99:2974,199,0
7    48083339    rs6978838    A    T    359.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461741    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:393,30,0
7    48086077    rs2708912    C    T    2337.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=P124L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48086057_48086213;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348904    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2371,175,0
7    48086161    rs10233232    T    C    3531.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=30.71;SNPEFF_AMINO_ACID_CHANGE=M152T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48086057_48086213;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348904    GT:AD:DP:GQ:PL    1/1:0,114:115:99:3532,268,0
7    48089394    rs909059    T    C    454.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7356;MQ=58.2;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348904    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:487,36,0
7    48089542    rs2686788    T    C    2256.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=N191;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48089477_48089574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348904    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2289,172,0
7    48089571    rs2708890    C    A    1807.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=30.13;SNPEFF_AMINO_ACID_CHANGE=P201H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48089477_48089574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348904    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1841,144,0
7    48092486    rs2686791    T    C    1614.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_AMINO_ACID_CHANGE=D127;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48092345_48092520;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435376    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1648,138,0
7    48092601    rs17547209    C    T    459.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348904    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:493,36,0
7    48092644    rs17629333    C    T    257.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348904    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
7    48100016    rs7790252    T    C    70.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348904    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:102,9,0
7    48139455    rs73694336    C    A    633.28    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.139;QD=13.47;ReadPosRankSum=0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432131    GT:AD:DP:GQ:PL    0/1:24,23:47:99:663,0,793
7    48260869    rs10252745    T    G    322.74    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=34;Dels=0.0;FS=3.086;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.992;QD=9.49;ReadPosRankSum=0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:21,13:34:99:353,0,667
7    48266876    rs17132152    C    A    2017.16    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.233;DB;DP=165;Dels=0.0;FS=10.158;HRun=0;HaplotypeScore=1.9243;MQ=59.07;MQ0=0;MQRankSum=0.29;QD=12.23;ReadPosRankSum=1.462;SNPEFF_AMINO_ACID_CHANGE=T162;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48266859_48267022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:90,75:165:99:2047,0,2503
7    48269679    rs60553397    G    C    773.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.419;QD=35.14;ReadPosRankSum=1.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    1/1:1,21:22:30.95:806,31,0
7    48273433    rs7802973    C    T    174.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
7    48273869    rs7357106    T    C    709.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.3;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.3;QD=29.58;ReadPosRankSum=-1.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    1/1:1,23:24:29.75:743,30,0
7    48284942    rs113837542    C    T    179.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.95;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:6,6:12:99:209,0,214
7    48285167    rs113452211    A    G    2636.16    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.297;DB;DP=151;Dels=0.0;FS=6.597;HRun=0;HaplotypeScore=0.9992;MQ=59.69;MQ0=0;MQRankSum=0.102;QD=17.46;ReadPosRankSum=-1.17;SNPEFF_AMINO_ACID_CHANGE=Q483;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48285109_48285209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:64,87:151:99:2666,0,2062
7    48285664    rs1405127    A    C    289.63    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.363;QD=13.17;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:12,10:22:99:320,0,386
7    48288129    rs12112608    A    T    732.72    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=2.629;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.477;QD=16.28;ReadPosRankSum=0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:19,26:45:99:763,0,628
7    48311602    rs116299940    G    A    967.48    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.614;DB;DP=93;Dels=0.0;FS=1.713;HRun=5;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.317;QD=10.4;ReadPosRankSum=0.739;SNPEFF_AMINO_ACID_CHANGE=S780N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:55,38:93:99:997,0,1871
7    48312490    rs116705389    G    A    1947.95    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=4.949;DB;DP=114;Dels=0.0;FS=6.73;HRun=0;HaplotypeScore=0.6651;MQ=59.8;MQ0=0;MQRankSum=0.658;QD=17.09;ReadPosRankSum=0.888;SNPEFF_AMINO_ACID_CHANGE=R1076H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:55,59:114:99:1978,0,1620
7    48313256    rs75846399    A    G    1409.38    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=3.177;DB;DP=101;Dels=0.0;FS=2.622;HRun=1;HaplotypeScore=0.8321;MQ=59.59;MQ0=0;MQRankSum=-0.539;QD=13.95;ReadPosRankSum=-0.656;SNPEFF_AMINO_ACID_CHANGE=I1331M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:54,47:101:99:1439,0,1815
7    48313510    rs17547830    A    G    1786.86    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.51;DB;DP=120;Dels=0.0;FS=0.686;HRun=0;HaplotypeScore=3.3331;MQ=59.24;MQ0=0;MQRankSum=1.082;QD=14.77;ReadPosRankSum=1.39;SNPEFF_AMINO_ACID_CHANGE=H1416R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:53,67:120:99:1817,0,1593
7    48313563    rs17132195    A    G    1650.33    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.335;DB;DP=110;Dels=0.0;FS=1.53;HRun=0;HaplotypeScore=1.9657;MQ=59.16;MQ0=0;MQRankSum=2.338;QD=15.0;ReadPosRankSum=-0.502;SNPEFF_AMINO_ACID_CHANGE=I1434V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1680,0,1938
7    48314330    rs17132196    A    G    2191.98    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.448;DB;DP=153;Dels=0.0;FS=7.112;HRun=0;HaplotypeScore=1.6828;MQ=59.4;MQ0=0;MQRankSum=-0.34;QD=14.33;ReadPosRankSum=-0.893;SNPEFF_AMINO_ACID_CHANGE=L1689;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:79,74:153:99:2222,0,2476
7    48314798    rs13233225    G    T    1994.15    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.696;DB;DP=130;Dels=0.0;FS=4.28;HRun=0;HaplotypeScore=2.1375;MQ=59.82;MQ0=0;MQRankSum=-0.815;QD=15.34;ReadPosRankSum=1.269;SNPEFF_AMINO_ACID_CHANGE=G1845;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:61,69:130:99:2024,0,1879
7    48314929    rs17132197    T    A    1601.22    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=140;Dels=0.0;FS=11.23;HRun=2;HaplotypeScore=2.7051;MQ=59.67;MQ0=0;MQRankSum=0.27;QD=11.44;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=I1889K;SNPEFF_CODON_CHANGE=aTa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:78,61:140:99:1631,0,2698
7    48315724    rs17092911    C    T    1105.12    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.737;DB;DP=78;Dels=0.0;FS=0.859;HRun=2;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.188;QD=14.17;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=S2154L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1135,0,1262
7    48315796    rs1880736    C    A    784.88    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.924;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.285;QD=12.26;ReadPosRankSum=-0.174;SNPEFF_AMINO_ACID_CHANGE=A2178E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:37,27:64:99:815,0,1216
7    48315898    rs17132198    T    C    560.69    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.269;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.533;QD=10.19;ReadPosRankSum=0.702;SNPEFF_AMINO_ACID_CHANGE=L2212S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:34,21:55:99:591,0,1130
7    48316055    rs17132201    A    G    786.14    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.023;DB;DP=76;Dels=0.0;FS=6.362;HRun=1;HaplotypeScore=1.8245;MQ=60.0;MQ0=0;MQRankSum=-1.776;QD=10.34;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=T2264;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48311384_48316162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:45,31:76:99:816,0,1517
7    48316179    rs17132204    T    C    576.99    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.874;DB;DP=57;Dels=0.0;FS=9.827;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=10.12;ReadPosRankSum=-0.748;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417403    GT:AD:DP:GQ:PL    0/1:32,25:57:99:607,0,1122
7    48317683    rs10246853    A    T    207.46    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.263;DB;DP=22;Dels=0.04;FS=0.0;HRun=3;HaplotypeScore=2.667;MQ=57.97;MQ0=0;MQRankSum=-0.853;QD=9.02;ReadPosRankSum=0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:8,14:22:99:237,0,198
7    48317836    rs111564118    G    A    1237.29    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.409;DB;DP=92;Dels=0.0;FS=0.801;HRun=0;HaplotypeScore=1.9957;MQ=59.75;MQ0=0;MQRankSum=-1.298;QD=13.45;ReadPosRankSum=0.393;SNPEFF_AMINO_ACID_CHANGE=G2349R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48317691_48319517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1267,0,1640
7    48318098    rs17132206    A    G    2829.42    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.491;DB;DP=211;Dels=0.0;FS=6.715;HRun=2;HaplotypeScore=1.9982;MQ=59.67;MQ0=0;MQRankSum=1.316;QD=13.41;ReadPosRankSum=0.133;SNPEFF_AMINO_ACID_CHANGE=K2436R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48317691_48319517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:104,107:211:99:2859,0,3311
7    48318400    rs17132208    T    G    2471.82    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=3.563;DB;DP=182;Dels=0.0;FS=4.325;HRun=1;HaplotypeScore=2.3683;MQ=59.75;MQ0=0;MQRankSum=1.499;QD=13.58;ReadPosRankSum=-0.24;SNPEFF_AMINO_ACID_CHANGE=S2537A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48317691_48319517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:96,86:182:99:2502,0,3093
7    48318811    rs2222648    C    T    1206.88    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=3.847;DB;DP=85;Dels=0.0;FS=2.93;HRun=0;HaplotypeScore=0.5784;MQ=59.73;MQ0=0;MQRankSum=-1.993;QD=14.2;ReadPosRankSum=1.536;SNPEFF_AMINO_ACID_CHANGE=R2674W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48317691_48319517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1237,0,1334
7    48319403    rs113190350    A    C    2745.59    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.707;DB;DP=177;Dels=0.0;FS=9.03;HRun=0;HaplotypeScore=0.8941;MQ=59.76;MQ0=0;MQRankSum=-0.127;QD=15.51;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=K2871T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48317691_48319517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:88,89:177:99:2776,0,3033
7    48320826    rs111864166    C    T    197.32    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.428;DB;DP=33;Dels=0.0;FS=6.743;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.607;QD=5.98;ReadPosRankSum=-0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:23,10:33:99:227,0,829
7    48321263    rs113558537    G    C    86.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.92;MQ0=0;MQRankSum=-0.55;QD=12.33;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:3,4:7:99:116,0,102
7    48327505    .    G    A    90.88    HaplotypeScoreFilter13;QDFilter2    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.378;DP=99;Dels=0.0;FS=2.84;HRun=1;HaplotypeScore=13.6083;MQ=56.11;MQ0=0;MQRankSum=-1.611;QD=0.92;ReadPosRankSum=3.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:60,39:99:99:121,0,782
7    48335265    rs10280046    C    T    895.74    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DB;DP=65;Dels=0.0;FS=1.39;HRun=2;HaplotypeScore=0.8667;MQ=59.65;MQ0=0;MQRankSum=-0.138;QD=13.78;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:34,31:65:99:926,0,1142
7    48336844    rs6583546    C    T    704.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4725;MQ=59.38;MQ0=0;MQRankSum=0.4;QD=9.4;ReadPosRankSum=1.6;SNPEFF_AMINO_ACID_CHANGE=L3045;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48336829_48336908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:50,25:75:99:735,0,1398
7    48338078    rs112334236    C    T    1265.84    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=3.475;DB;DP=92;Dels=0.0;FS=4.071;HRun=1;HaplotypeScore=4.5572;MQ=59.04;MQ0=0;MQRankSum=2.294;QD=13.76;ReadPosRankSum=-0.135;SNPEFF_AMINO_ACID_CHANGE=H3105;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48337963_48338084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:46,45:92:99:1296,0,1274
7    48349387    rs74705596    T    C    173.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-2.383;QD=17.34;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:4,6:10:99:203,0,136
7    48352570    rs56322731    G    A    873.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    1/1:0,23:23:69.20:907,69,0
7    48352698    rs112606040    A    G    800.05    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=78;Dels=0.0;FS=6.387;HRun=0;HaplotypeScore=6.0595;MQ=59.41;MQ0=0;MQRankSum=0.305;QD=10.26;ReadPosRankSum=0.704;SNPEFF_AMINO_ACID_CHANGE=N3184S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48352664_48352828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:43,35:78:99:830,0,1252
7    48354071    rs17712567    A    T    176.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.523;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.998;QD=11.04;ReadPosRankSum=0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:8,8:16:99:207,0,275
7    48415892    rs2163938    A    G    1003.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1036,81,0
7    48428981    rs4917118    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    48467218    rs35418390    C    G    307.85    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.154;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=17.1;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:5,13:18:99:338,0,156
7    48467224    rs35073581    A    C    479.75    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.443;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.113;QD=23.99;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:6,14:20:99:510,0,191
7    48467355    rs13233421    T    C    1083.83    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.376;DB;DP=93;Dels=0.0;FS=5.663;HRun=2;HaplotypeScore=2.4088;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=11.65;ReadPosRankSum=0.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:49,44:93:99:1114,0,1518
7    48467581    rs13243091    T    C    116.33    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-0.4;QD=6.46;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:10,8:18:99:146,0,290
7    48467634    rs34541457    T    C    131.28    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.529;QD=10.94;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:7,5:12:99:161,0,249
7    48506416    rs4917151    G    C    742.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=39.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:775,57,0
7    48506566    rs4917152    A    G    1201    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.909;DB;DP=113;Dels=0.0;FS=7.679;HRun=0;HaplotypeScore=0.9998;MQ=58.97;MQ0=0;MQRankSum=0.749;QD=10.63;ReadPosRankSum=-1.48;SNPEFF_AMINO_ACID_CHANGE=N4277D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48506553_48506642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:64,49:113:99:1231,0,1952
7    48506642    rs4917153    A    G    1208.05    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.241;DB;DP=114;Dels=0.0;FS=4.913;HRun=1;HaplotypeScore=5.541;MQ=59.19;MQ0=0;MQRankSum=0.272;QD=10.6;ReadPosRankSum=-1.835;SNPEFF_AMINO_ACID_CHANGE=Q4302R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48506553_48506642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435803    GT:AD:DP:GQ:PL    0/1:68,46:114:99:1238,0,2134
7    48506707    rs4917154    A    G    600.32    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-1.257;QD=12.77;ReadPosRankSum=-0.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:25,22:47:99:630,0,837
7    48506727    rs4917155    G    A    692.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.865;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=16.49;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:21,21:42:99:723,0,745
7    48511297    rs7810026    T    C    318.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:351,27,0
7    48520507    rs10249009    G    A    484.83    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.162;QD=18.65;ReadPosRankSum=0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:9,17:26:99:515,0,285
7    48520780    rs4472462    A    T    2918.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2952,226,0
7    48522845    rs1918584    C    G    258.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=21.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    1/1:0,12:12:32.96:292,33,0
7    48522846    rs1918585    A    G    258.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=21.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    1/1:0,12:12:32.96:292,33,0
7    48528732    rs17730186    G    A    384.29    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.841;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.9283;MQ=59.3;MQ0=0;MQRankSum=-0.419;QD=11.65;ReadPosRankSum=-1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:19,13:33:99:414,0,568
7    48545879    rs6583447    A    T    578.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.591;QD=21.41;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:9,18:27:99:608,0,249
7    48545976    rs6583448    A    G    1684.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=K176E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_48545932_48545986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544596    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1717,132,0
7    48550502    rs1574070    G    A    108.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.718;QD=9.08;ReadPosRankSum=0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:6,6:12:99:139,0,182
7    48563752    rs11185607    A    C    225.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.998;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.313;QD=14.09;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:8,8:16:99:255,0,277
7    48626645    rs7778411    C    G    288.86    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.922;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=13.76;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:10,11:21:99:319,0,351
7    48634109    rs6954644    C    A    99.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=16.6;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:2,4:6:61.50:130,0,62
7    48634113    rs75933127    A    G    78.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=13.16;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:2,4:6:57.85:109,0,58
7    48654746    rs10255431    C    A    64.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.24;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:4,3:7:94.66:95,0,142
7    48654761    rs10243913    G    A    101.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.15;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:6,4:10:99:131,0,206
7    48682996    rs28610321    C    G    2073.83    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=149;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9944;MQ=59.85;MQ0=0;MQRankSum=-1.704;QD=13.92;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:77,72:149:99:2104,0,2477
7    48684185    rs71883124    CTT    C    185.89    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.794;DB;DP=50;FS=0.0;HRun=19;HaplotypeScore=473.158;IndelType=D;MQ=48.85;MQ0=0;MQRankSum=0.606;QD=3.72;ReadPosRankSum=1.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:32,5:50:99:225,0,239
7    48684204    .    TGC    T    84.19    QDFilter2    AB=0.845;AC=1;AF=0.50;AN=2;BaseQRankSum=2.282;DP=60;FS=10.742;HRun=0;HaplotypeScore=535.967;IndelType=D;MQ=49.96;MQ0=0;MQRankSum=-1.346;QD=1.4;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ABCA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411975    GT:AD:DP:GQ:PL    0/1:49,6:60:99:123,0,954
7    48964751    rs61731347    G    A    1015.02    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.094;DB;DP=78;Dels=0.0;FS=7.88;HRun=1;HaplotypeScore=1.5767;MQ=50.11;MQ0=1;MQRankSum=1.084;QD=13.01;ReadPosRankSum=-1.271;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006024.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406468    GT:AD:DP:GQ:PL    0/1:42,36:78:99:1045,0,1196
7    48965000    rs10259692    G    A    167.03    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.57;MQ0=11;MQRankSum=-0.116;QD=4.77;ReadPosRankSum=0.579;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006024.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406468    GT:AD:DP:GQ:PL    0/1:21,14:35:99:197,0,323
7    49842561    rs73108844    C    T    122.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340652    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
7    49951519    rs10639154    G    GCACACACA    352.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=51.6104;IndelType=I;MQ=52.31;MQ0=0;QD=70.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340652    GT:AD:DP:GQ:PL    1/1:0,2:5:15.05:394,15,0
7    49951544    rs7792519    T    C    40.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.62;MQ0=0;QD=5.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340652    GT:AD:DP:GQ:PL    1/1:0,7:7:8.98:73,9,0
7    49977373    rs2046300    T    C    69.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046087    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
7    50023122    rs988392    C    T    818.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046087    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:851,63,0
7    50023202    rs988393    A    G    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046087    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
7    50058055    rs1396281    C    T    80.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046087    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
7    50070468    rs1351692    G    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046087    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    50070921    rs1351691    C    G    580.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046087    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:613,45,0
7    50121653    rs1911755    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046087    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    50129026    rs3757391    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZPBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046087    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    50144059    rs3034461    T    TTA    307.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=18.2903;IndelType=I;MQ=61.34;MQ0=0;QD=38.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297001    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:349,21,0
7    50156916    rs6959792    C    G    277.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297001    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:310,24,0
7    50169508    rs1456900    G    A    124.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297001    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
7    50175654    rs12718244    G    A    1263.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297001    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1297,93,0
7    50179609    rs1993445    C    T    543.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297001    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:577,42,0
7    50180972    rs1456908    C    T    5153.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.111;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5113;MQ=59.84;MQ0=0;MQRankSum=0.681;QD=35.05;ReadPosRankSum=0.131;SNPEFF_AMINO_ACID_CHANGE=T358I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_50180877_50180984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297001    GT:AD:DP:GQ:PL    1/1:1,146:147:99:5153,345,0
7    50198626    rs4917120    T    C    1186.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9947;MQ=59.09;MQ0=0;QD=25.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297001    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1219,111,0
7    50435617    rs58548604    A    T    636.01    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.992;DB;DP=69;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-1.739;QD=9.22;ReadPosRankSum=0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IKZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331340    GT:AD:DP:GQ:PL    0/1:37,32:69:99:666,0,1201
7    50435777    rs12669559    T    G    2072.19    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.203;DB;DP=151;Dels=0.0;FS=8.523;HRun=0;HaplotypeScore=0.9734;MQ=59.85;MQ0=0;MQRankSum=-1.011;QD=13.72;ReadPosRankSum=-0.33;SNPEFF_AMINO_ACID_CHANGE=P78;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_50435704_50437142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IKZF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413698    GT:AD:DP:GQ:PL    0/1:80,71:151:99:2102,0,2627
7    50436033    rs10899750    A    G    2806.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=R164G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_50435704_50437142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IKZF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413698    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2840,214,0
7    50512857    rs10230307    C    T    171.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420829    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
7    50512929    rs10230343    C    A    827.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420829    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:861,63,0
7    50514946    .    A    G    231.86    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.873;MQ=60.0;MQ0=0;MQRankSum=-0.427;QD=8.59;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=W14R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_50511831_50514995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIGNL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356889    GT:AD:DP:GQ:PL    0/1:17,10:27:99:262,0,543
7    50537677    rs111661497    C    CA    152.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=13;HaplotypeScore=39.6509;IndelType=I;MQ=53.95;MQ0=0;QD=19.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:2,6:8:21.02:194,21,0
7    50537983    rs3757472    A    C    226.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:260,21,0
7    50544269    rs5884156    AG    A    1280.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=1;HaplotypeScore=85.5191;IndelType=D;MQ=60.67;MQ0=0;QD=40.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:0,32:32:96.31:1322,96,0
7    50545191    rs4992502    C    A    356.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:390,30,0
7    50547584    rs11575457    A    C    1183.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1216,108,0
7    50547661    rs11575456    AGCCCT    A    512.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=80.0773;IndelType=D;MQ=44.62;MQ0=0;QD=42.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:3,9:12:27.09:554,27,0
7    50566671    rs3807562    G    A    153.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:186,15,0
7    50566762    rs2876829    C    T    554.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:588,45,0
7    50611735    rs6264    T    C    2442.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=29.43;SNPEFF_AMINO_ACID_CHANGE=M17V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_50611583_50611811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357936    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2476,199,0
7    50660438    rs6967874    T    C    32.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461886    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
7    50672907    rs4947709    T    C    593.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.21;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335866    GT:AD:DP:GQ:PL    1/1:0,19:19:51.13:626,51,0
7    50673029    rs4947710    T    C    1372.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.54;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=A391;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_50672987_50673103;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335866    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1405,108,0
7    50685625    rs2240498    A    T    620.47    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.842;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7853;MQ=60.0;MQ0=0;MQRankSum=0.623;QD=15.51;ReadPosRankSum=-0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335866    GT:AD:DP:GQ:PL    0/1:19,21:40:99:650,0,663
7    50694429    rs2074778    G    A    256.27    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.381;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.178;QD=11.14;ReadPosRankSum=-1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335866    GT:AD:DP:GQ:PL    0/1:12,10:22:99:286,0,352
7    50694457    rs1468450    A    G    369.72    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.458;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9985;MQ=60.0;MQ0=0;MQRankSum=-1.038;QD=9.73;ReadPosRankSum=-0.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335866    GT:AD:DP:GQ:PL    0/1:20,18:38:99:400,0,702
7    50742118    rs2715128    A    G    174.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439044    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
7    50742180    rs1800504    C    T    497.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.24;SNPEFF_AMINO_ACID_CHANGE=P105;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_50742133_50742355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357271    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:530,39,0
7    50799889    rs2074777    C    T    1085.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335866    GT:AD:DP:GQ:PL    1/1:0,29:29:84.26:1119,84,0
7    50800169    rs2108350    T    C    165.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335866    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
7    51085127    rs5884181    A    AT    524.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=33.9283;IndelType=I;MQ=61.53;MQ0=0;QD=37.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462395    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:566,42,0
7    51093013    rs2240087    A    T    688.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=28.69;SNPEFF_AMINO_ACID_CHANGE=A1072;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_51092806_51093069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431948    GT:AD:DP:GQ:PL    1/1:0,24:24:54.17:722,54,0
7    51094269    rs61737954    G    A    684.63    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.408;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.62;MQ0=0;MQRankSum=0.408;QD=11.41;ReadPosRankSum=-0.989;SNPEFF_AMINO_ACID_CHANGE=H1045Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_51094243_51094362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431948    GT:AD:DP:GQ:PL    0/1:33,26:60:99:715,0,1019
7    51096036    rs2240089    G    C    526.68    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.815;DB;DP=40;Dels=0.0;FS=7.314;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=13.17;ReadPosRankSum=0.054;SNPEFF_AMINO_ACID_CHANGE=H1001Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_51095409_51097288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395542    GT:AD:DP:GQ:PL    0/1:21,19:40:99:557,0,680
7    51096974    rs2240090    C    T    597.96    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.896;DB;DP=48;Dels=0.0;FS=11.083;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.429;QD=12.46;ReadPosRankSum=1.767;SNPEFF_AMINO_ACID_CHANGE=V105I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_51096652_51097288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457306    GT:AD:DP:GQ:PL    0/1:28,20:48:99:628,0,864
7    51097063    rs10230120    T    G    1286.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.77;SNPEFF_AMINO_ACID_CHANGE=D462A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_51095409_51097288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431948    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1320,102,0
7    51098567    rs142060269    GTCT    G    2683.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=253.8391;IndelType=D;MQ=57.98;MQ0=0;QD=44.72;SNPEFF_AMINO_ACID_CHANGE=ED366D;SNPEFF_CODON_CHANGE=gaagac/gac;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_7_51098509_51098606;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431948    GT:AD:DP:GQ:PL    1/1:3,57:60:99:2725,172,0
7    51153061    rs56900571    A    AAGGAAAGAC    674.24    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=102.5323;IndelType=I;MQ=45.77;MQ0=0;MQRankSum=-2.637;QD=61.29;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265136    GT:AD:DP:GQ:PL    0/1:6,5:11:99:713,0,369
7    51287470    rs801142    A    G    1796.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.088;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8625;MQ=59.61;MQ0=0;MQRankSum=0.734;QD=30.45;ReadPosRankSum=-1.321;SNPEFF_AMINO_ACID_CHANGE=S55;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_51287438_51287641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449281    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1830,104,0
7    51452312    rs71021780    CAT    C    227.37    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.574;DB;DP=22;FS=2.831;HRun=0;HaplotypeScore=79.8844;IndelType=D;MQ=42.34;MQ0=0;MQRankSum=-1.455;QD=9.89;ReadPosRankSum=-0.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2021A8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444843    GT:AD:DP:GQ:PL    0/1:14,9:22:99:266,0,769
7    51452581    rs13234472    C    T    60.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.28;MQ0=0;MQRankSum=0.922;QD=7.59;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2021A8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418553    GT:AD:DP:GQ:PL    0/1:4,4:8:90.69:91,0,133
7    51454172    rs150794784    G    A    89.09    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9202;MQ=36.85;MQ0=0;MQRankSum=0.956;QD=11.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=CICP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543904    GT:AD:DP:GQ:PL    0/1:3,5:8:67.51:119,0,68
7    51454314    .    A    T    66.27    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=43.98;MQ0=0;MQRankSum=-2.037;QD=6.02;ReadPosRankSum=-1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=CICP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543904    GT:AD:DP:GQ:PL    0/1:7,4:11:96.26:96,0,218
7    51454356    .    A    G    60.73    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=42.97;MQ0=0;MQRankSum=-0.573;QD=6.07;ReadPosRankSum=1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=CICP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543904    GT:AD:DP:GQ:PL    0/1:7,3:10:90.72:91,0,197
7    51454370    .    C    T    52.68    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=42.97;MQ0=0;MQRankSum=-1.214;QD=5.27;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=CICP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543904    GT:AD:DP:GQ:PL    0/1:7,3:10:82.68:83,0,213
7    53103117    rs12718737    C    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408890    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
7    53103267    rs10248048    T    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408890    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
7    53103554    rs11238247    C    G    735.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_AMINO_ACID_CHANGE=Q64E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_53103335_53104617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408890    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:769,57,0
7    53103571    rs11238248    G    A    564.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.34;SNPEFF_AMINO_ACID_CHANGE=G69;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_53103335_53104617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408890    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:597,48,0
7    53103946    rs12113170    G    C    1508.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=29.57;SNPEFF_AMINO_ACID_CHANGE=G194;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_53103335_53104617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408890    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1541,123,0
7    53255035    rs1917692    G    T    181.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.76;MQ0=0;QD=30.27;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-266F12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421150    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:215,18,0
7    54612197    .    T    TGAA    501.79    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.738;DP=22;FS=3.882;HRun=0;HaplotypeScore=67.8867;IndelType=I;MQ=57.51;MQ0=0;MQRankSum=0.401;QD=22.81;ReadPosRankSum=-0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302287    GT:AD:DP:GQ:PL    0/1:13,8:22:99:541,0,603
7    54614698    rs11432820    C    CG    1292.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=4;HaplotypeScore=90.6495;IndelType=I;MQ=60.26;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302287    GT:AD:DP:GQ:PL    1/1:2,34:36:99:1335,99,0
7    54618010    rs2293343    C    T    2457.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495904    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2491,184,0
7    54621526    rs662136    T    C    6962.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=202;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7885;MQ=59.89;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302287    GT:AD:DP:GQ:PL    1/1:0,202:202:99:6963,509,0
7    54820186    rs6952793    A    G    120.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.268;QD=12.09;ReadPosRankSum=1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC61G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460484    GT:AD:DP:GQ:PL    0/1:5,5:10:99:151,0,172
7    54826830    rs2699226    G    C    619.44    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.488;DB;DP=51;Dels=0.0;FS=7.897;HRun=2;HaplotypeScore=3.393;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=11.91;ReadPosRankSum=0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC61G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352861    GT:AD:DP:GQ:PL    0/1:27,24:51:99:649,0,626
7    54826928    rs2709289    C    T    774.97    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.691;DB;DP=62;Dels=0.0;FS=5.346;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.128;QD=12.5;ReadPosRankSum=1.803;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_54826851_54826939;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC61G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352861    GT:AD:DP:GQ:PL    0/1:35,27:62:99:805,0,875
7    55002836    rs35747839    G    GA    401.16    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=3.423;DB;DP=29;FS=0.0;HRun=4;HaplotypeScore=117.0823;IndelType=I;MQ=52.86;MQ0=3;MQRankSum=-0.712;QD=12.54;ReadPosRankSum=-1.355;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP4-791C19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407916    GT:AD:DP:GQ:PL    0/1:15,17:29:99:440,0,392
7    55003988    rs7789214    A    G    793.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP4-791C19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407916    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:826,63,0
7    55005265    rs2192264    A    G    1618    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.003;DB;DP=120;Dels=0.0;FS=1.458;HRun=2;HaplotypeScore=1.399;MQ=59.27;MQ0=0;MQRankSum=0.715;QD=13.48;ReadPosRankSum=-0.364;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP4-791C19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407916    GT:AD:DP:GQ:PL    0/1:63,57:120:99:1648,0,2107
7    55210188    rs17336331    G    A    296.59    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=27;Dels=0.0;FS=6.532;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.315;QD=10.98;ReadPosRankSum=-0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275493    GT:AD:DP:GQ:PL    0/1:13,14:27:99:327,0,455
7    55221655    rs4947986    G    A    556.91    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.888;DB;DP=36;Dels=0.0;FS=2.2;HRun=0;HaplotypeScore=2.5114;MQ=59.36;MQ0=0;MQRankSum=0.347;QD=15.47;ReadPosRankSum=-1.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275493    GT:AD:DP:GQ:PL    0/1:19,17:36:99:587,0,506
7    55228053    rs1558544    A    T    379.73    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.958;QD=15.19;ReadPosRankSum=-0.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420316    GT:AD:DP:GQ:PL    0/1:11,14:25:99:410,0,344
7    55228173    rs759162    C    T    72.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=1.754;QD=10.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420316    GT:AD:DP:GQ:PL    0/1:4,3:7:65.76:103,0,66
7    55248787    rs10241326    T    C    32.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=5.35;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275493    GT:AD:DP:GQ:PL    0/1:3,3:6:62.10:62,0,112
7    55249063    rs1050171    G    A    499.36    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.212;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=9.25;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=Q657;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_55248986_55249171;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395504    GT:AD:DP:GQ:PL    0/1:34,20:54:99:529,0,1058
7    55259763    rs6970262    A    G    176.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275493    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
7    55266417    rs1140475    T    C    1309.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7333;MQ=59.46;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=T773;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_55266410_55266556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395504    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1342,108,0
7    55272826    rs2692456    G    A    143.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455089    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:176,15,0
7    55459563    rs2049497    A    G    609.21    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=53;Dels=0.0;FS=2.348;HRun=1;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=1.224;QD=11.49;ReadPosRankSum=1.099;SNPEFF_AMINO_ACID_CHANGE=T94;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_55459486_55459603;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254770    GT:AD:DP:GQ:PL    0/1:29,24:53:99:639,0,870
7    55468773    rs815929    C    A    228.03    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.528;QD=10.86;ReadPosRankSum=2.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486376    GT:AD:DP:GQ:PL    0/1:11,10:21:99:258,0,391
7    55498755    rs2293322    G    A    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VOPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462326    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
7    55499058    rs815988    A    G    79.36    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=2.373;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.403;QD=3.61;ReadPosRankSum=0.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LANCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476479    GT:AD:DP:GQ:PL    0/1:18,4:22:99:109,0,517
7    55540791    rs712819    G    C    238.82    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=21;Dels=0.0;FS=2.282;HRun=2;HaplotypeScore=0.0;MQ=54.43;MQ0=0;MQRankSum=-0.176;QD=11.37;ReadPosRankSum=-1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VOPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285279    GT:AD:DP:GQ:PL    0/1:11,10:21:99:269,0,292
7    55605063    rs73139624    G    T    32.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.63;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VOPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285279    GT:AD:DP:GQ:PL    0/1:5,2:7:62.39:62,0,184
7    55750390    rs11238374    A    G    1753.74    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.841;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=32.07;MQ0=19;MQRankSum=0.099;QD=19.7;ReadPosRankSum=-0.297;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FKBP9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324256    GT:AD:DP:GQ:PL    1/1:1,88:89:99:1787,141,0
7    55774755    rs112151645    A    G    145.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.336;QD=14.59;ReadPosRankSum=2.148;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FKBP9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441699    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,181
7    55779220    rs12536949    A    G    247.26    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=59;Dels=0.0;FS=8.707;HRun=2;HaplotypeScore=3.1851;MQ=45.17;MQ0=6;MQRankSum=-5.073;QD=4.19;ReadPosRankSum=1.902;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FKBP9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441699    GT:AD:DP:GQ:PL    0/1:32,27:59:99:277,0,1044
7    55780176    rs10267547    T    C    171.70    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.675;DB;DP=21;Dels=0.0;FS=8.316;HRun=0;HaplotypeScore=0.734;MQ=50.67;MQ0=0;MQRankSum=-3.376;QD=8.18;ReadPosRankSum=-1.954;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FKBP9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441699    GT:AD:DP:GQ:PL    0/1:12,9:21:99:202,0,433
7    55780845    rs77949648    T    C    219.03    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=56;Dels=0.0;FS=3.16;HRun=0;HaplotypeScore=0.5784;MQ=45.95;MQ0=2;MQRankSum=-5.59;QD=3.91;ReadPosRankSum=-0.637;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FKBP9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441699    GT:AD:DP:GQ:PL    0/1:31,25:56:99:249,0,1058
7    55799871    rs73130703    C    G    740.57    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=72;Dels=0.0;FS=3.562;HRun=2;HaplotypeScore=6.5585;MQ=59.16;MQ0=0;MQRankSum=-1.732;QD=10.29;ReadPosRankSum=-0.687;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SUMO2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438311    GT:AD:DP:GQ:PL    0/1:43,29:72:99:771,0,1153
7    55832429    rs146909187    G    GT    330.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.075;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=136.9514;IndelType=I;MQ=50.87;MQ0=0;MQRankSum=-1.863;QD=14.36;ReadPosRankSum=-0.969;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-613E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450062    GT:AD:DP:GQ:PL    1/1:4,18:20:7.32:371,7,0
7    55832683    .    A    G    45.76    QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=1.861;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.45;MQ0=1;MQRankSum=-2.471;QD=1.48;ReadPosRankSum=0.763;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-613E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450062    GT:AD:DP:GQ:PL    0/1:27,4:31:75.75:76,0,877
7    55873148    rs73130801    G    A    291.48    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.961;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=12.14;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388975    GT:AD:DP:GQ:PL    0/1:13,11:24:99:321,0,472
7    55873155    rs13233180    T    G    218.74    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=10.94;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388975    GT:AD:DP:GQ:PL    0/1:11,9:20:99:249,0,367
7    55875223    rs2331097    T    C    52.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388975    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    55939374    rs6958601    C    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.99;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
7    55939667    .    T    C    1090.18    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.493;DP=67;Dels=0.0;FS=4.932;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.36;QD=16.27;ReadPosRankSum=1.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-419M24.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420654    GT:AD:DP:GQ:PL    0/1:31,36:67:99:1120,0,899
7    55991292    rs2174460    G    A    623.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF713;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411863    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:657,48,0
7    56022321    rs13227582    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446692    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
7    56022544    rs59849749    T    C    2982.80    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=0.426;DB;DP=183;Dels=0.0;FS=4.935;HRun=0;HaplotypeScore=1.9468;MQ=59.62;MQ0=0;MQRankSum=0.155;QD=16.3;ReadPosRankSum=-0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446692    GT:AD:DP:GQ:PL    0/1:81,102:183:99:3013,0,2460
7    56022981    rs15892    T    C    220.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=24.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443449    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:254,21,0
7    56049990    rs66485869    A    G    131.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.323;QD=9.43;ReadPosRankSum=-1.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470036    GT:AD:DP:GQ:PL    0/1:8,6:14:99:162,0,294
7    56082992    rs4255091    C    G    405.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.377;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=16.88;ReadPosRankSum=-0.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427797    GT:AD:DP:GQ:PL    0/1:12,12:24:99:435,0,370
7    56084856    rs71561985    C    CA    181.88    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=15;FS=3.358;HRun=3;HaplotypeScore=36.2626;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=12.13;ReadPosRankSum=-1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413218    GT:AD:DP:GQ:PL    0/1:9,6:15:99:221,0,176
7    56089033    rs73140778    A    C    88.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PSPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275605    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    56122058    rs6593297    A    T    3570.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.553;DB;DP=117;Dels=0.0;FS=3.09;HRun=2;HaplotypeScore=0.9159;MQ=47.25;MQ0=0;MQRankSum=-0.358;QD=30.52;ReadPosRankSum=0.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275603    GT:AD:DP:GQ:PL    1/1:1,116:117:99:3570,240,0
7    56124240    rs6960348    A    G    37.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.59;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493855    GT:AD:DP:GQ:PL    0/1:1,2:3:25.33:68,0,25
7    56125527    rs12671494    T    C    34.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493855    GT:AD:DP:GQ:PL    0/1:2,2:4:64.07:64,0,70
7    56126360    rs2230197    T    C    1820.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.04;MQ0=0;QD=31.39;SNPEFF_AMINO_ACID_CHANGE=V169;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_56126313_56126395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539340    GT:AD:DP:GQ:PL    1/1:0,57:58:99:1853,141,0
7    56132122    rs3813505    C    T    281.92    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.705;QD=17.62;ReadPosRankSum=1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275603    GT:AD:DP:GQ:PL    0/1:6,10:16:99:312,0,158
7    56136260    rs4245575    C    A    1085.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.77;SNPEFF_AMINO_ACID_CHANGE=D48E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_56136175_56136331;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUMF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451338    GT:AD:DP:GQ:PL    1/1:0,28:28:81.27:1118,81,0
7    56142519    rs4948104    A    G    534.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUMF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483327    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:567,42,0
7    56146956    rs13244654    T    C    37.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297373    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
7    56147589    rs10800    A    G    1339.26    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=82;Dels=0.0;FS=0.842;HRun=0;HaplotypeScore=1.8136;MQ=59.44;MQ0=0;MQRankSum=0.886;QD=16.33;ReadPosRankSum=1.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297373    GT:AD:DP:GQ:PL    0/1:40,42:82:99:1369,0,1288
7    56149847    rs17172508    C    T    457.56    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.187;DB;DP=30;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=15.25;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395428    GT:AD:DP:GQ:PL    0/1:14,16:30:99:488,0,442
7    56150052    rs3778867    G    A    121.36    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=20.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395428    GT:AD:DP:GQ:PL    0/1:1,5:6:27.60:151,0,28
7    56151489    rs2242508    A    G    92.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467726    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
7    56155219    rs6945795    C    T    104.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.03;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492124    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,131
7    56169419    rs8406    C    T    587.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.28;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473095    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:621,51,0
7    56171760    rs6593298    A    C    371.38    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.277;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.338;QD=9.52;ReadPosRankSum=0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395422    GT:AD:DP:GQ:PL    0/1:25,14:39:99:401,0,888
7    56173970    rs816408    A    G    151.22    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=15.12;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395422    GT:AD:DP:GQ:PL    0/1:3,7:10:96.92:181,0,97
7    56174115    rs10043    A    C    770.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=27.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473095    GT:AD:DP:GQ:PL    1/1:0,27:28:66.20:804,66,0
7    56174140    rs816407    G    T    926.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.64;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473095    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:960,75,0
7    56717637    rs1906630    T    A    500.19    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=41;Dels=0.0;FS=1.979;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.055;QD=12.2;ReadPosRankSum=0.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-10F11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429248    GT:AD:DP:GQ:PL    0/1:23,18:41:99:530,0,784
7    56717788    rs1849659    A    G    507    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.09;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=13.34;ReadPosRankSum=0.695;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-10F11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429248    GT:AD:DP:GQ:PL    0/1:22,16:38:99:537,0,757
7    56718199    rs35100860    CA    C    246.02    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=29;FS=0.0;HRun=10;HaplotypeScore=147.8986;IndelType=D;MQ=53.32;MQ0=0;MQRankSum=0.607;QD=8.48;ReadPosRankSum=-0.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-10F11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429248    GT:AD:DP:GQ:PL    0/1:3,14:29:99:285,0,113
7    56718292    rs2634084    C    T    1323.67    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.584;DB;DP=80;Dels=0.0;FS=4.632;HRun=0;HaplotypeScore=1.9985;MQ=53.23;MQ0=0;MQRankSum=-0.808;QD=16.55;ReadPosRankSum=0.564;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-10F11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429248    GT:AD:DP:GQ:PL    0/1:33,47:80:99:1354,0,1032
7    56718310    rs112889801    C    G    1260.11    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=74;Dels=0.0;FS=1.915;HRun=0;HaplotypeScore=0.0;MQ=50.08;MQ0=0;MQRankSum=1.654;QD=17.03;ReadPosRankSum=1.199;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-10F11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429248    GT:AD:DP:GQ:PL    0/1:34,40:74:99:1290,0,985
7    56718323    rs111355797    G    A    1240.02    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DB;DP=83;Dels=0.0;FS=1.78;HRun=1;HaplotypeScore=0.7887;MQ=45.69;MQ0=0;MQRankSum=0.373;QD=14.94;ReadPosRankSum=-0.345;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-10F11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429248    GT:AD:DP:GQ:PL    0/1:37,46:83:99:1270,0,953
7    56718394    rs111592613    G    A    876.26    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.232;DB;DP=73;Dels=0.0;FS=1.027;HRun=4;HaplotypeScore=0.5784;MQ=44.66;MQ0=0;MQRankSum=0.085;QD=12.0;ReadPosRankSum=0.412;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-10F11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429248    GT:AD:DP:GQ:PL    0/1:39,34:73:99:906,0,1153
7    57069669    rs1467279    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TNRC18C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
7    57069935    rs1966122    G    C    142.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.03;MQ0=0;QD=20.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TNRC18C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441896    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:175,15,0
7    57075771    rs76353769    C    T    110.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.85;MQ0=6;QD=8.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TNRC18C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441896    GT:AD:DP:GQ:PL    1/1:4,9:13:12.02:143,12,0
7    57084480    rs11769108    A    G    148.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=27.7;MQ0=5;QD=9.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-220H4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398760    GT:AD:DP:GQ:PL    1/1:0,16:16:15.04:181,15,0
7    57128174    rs12538700    A    T    76.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.51;MQ0=0;QD=19.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PHKG1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430144    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:109,12,0
7    57128297    rs9719130    G    A    103.75    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.916;DB;DP=21;Dels=0.0;FS=2.112;HRun=1;HaplotypeScore=0.9789;MQ=43.4;MQ0=1;MQRankSum=-0.602;QD=4.94;ReadPosRankSum=-0.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PHKG1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430144    GT:AD:DP:GQ:PL    0/1:15,6:21:99:134,0,384
7    57128425    rs9719133    G    A    73.19    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.142;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.88;MQ0=0;MQRankSum=0.425;QD=3.49;ReadPosRankSum=0.142;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PHKG1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430144    GT:AD:DP:GQ:PL    0/1:17,4:21:99:103,0,502
7    57128463    rs139636026    G    C    139.08    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=17;Dels=0.0;FS=14.472;HRun=1;HaplotypeScore=0.0;MQ=44.53;MQ0=1;MQRankSum=-0.813;QD=8.18;ReadPosRankSum=-0.597;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PHKG1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430144    GT:AD:DP:GQ:PL    0/1:11,6:17:99:169,0,344
7    57188016    rs78588121    A    G    1447.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.65;MQ0=0;QD=26.8;SNPEFF_AMINO_ACID_CHANGE=M369T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_57187321_57188859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF479;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331162    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1480,144,0
7    57188526    rs62464801    T    C    954.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.48;MQ0=5;QD=19.09;SNPEFF_AMINO_ACID_CHANGE=H199R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_57187321_57188859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF479;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331162    GT:AD:DP:GQ:PL    1/1:4,46:50:90.11:988,90,0
7    57188718    rs62464802    T    C    4165.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=45.92;MQ0=2;QD=33.59;SNPEFF_AMINO_ACID_CHANGE=Y135C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_57187321_57188859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF479;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331162    GT:AD:DP:GQ:PL    1/1:1,123:124:99:4165,313,0
7    57188889    rs62464803    C    A    2119.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6828;MQ=30.84;MQ0=16;QD=22.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF479;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331162    GT:AD:DP:GQ:PL    1/1:9,85:94:99:2153,207,0
7    57194638    rs57435235    T    C    166.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.06;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF479;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331162    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:199,18,0
7    57199809    rs3889852    G    C    279.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF479;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331162    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:313,24,0
7    57199906    rs3889851    A    G    1179.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.41;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF479;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331162    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1212,105,0
7    57522504    rs4870664    T    C    170.81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.9997;MQ=56.16;MQ0=0;MQRankSum=0.633;QD=17.08;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF716;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418732    GT:AD:DP:GQ:PL    0/1:4,6:10:99:201,0,136
7    57528230    rs10215781    C    T    130.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=6.854;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=14.54;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF716;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418732    GT:AD:DP:GQ:PL    0/1:4,5:9:99:161,0,140
7    57528997    rs10272498    T    C    956.23    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=3.289;DB;DP=48;Dels=0.0;FS=2.5;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.611;QD=19.92;ReadPosRankSum=-0.506;SNPEFF_AMINO_ACID_CHANGE=V265A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_57528430_57529828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF716;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418732    GT:AD:DP:GQ:PL    0/1:19,29:48:99:986,0,526
7    57529392    rs13235676    A    C    939.73    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.918;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.824;QD=13.05;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=K397Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_57528430_57529828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF716;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418732    GT:AD:DP:GQ:PL    0/1:37,35:72:99:970,0,1157
7    57887924    .    C    G    199.39    MQFilter40    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9691;MQ=22.48;MQ0=1;MQRankSum=0.555;QD=9.49;ReadPosRankSum=-0.079;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-548K12.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430646    GT:AD:DP:GQ:PL    0/1:8,13:21:99:229,0,145
7    57887957    rs140318714    T    C    38.50    MQFilter40;QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9757;MQ=19.56;MQ0=7;MQRankSum=0.788;QD=1.67;ReadPosRankSum=0.667;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-548K12.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430646    GT:AD:DP:GQ:PL    0/1:18,5:23:68.49:68,0,284
7    57887964    rs148081874    G    A    213.36    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.9624;MQ=18.99;MQ0=7;MQRankSum=1.437;QD=10.67;ReadPosRankSum=0.085;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-548K12.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430646    GT:AD:DP:GQ:PL    0/1:4,16:20:43.96:243,0,44
7    57887972    rs150877116    T    G    70.21    MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.9557;MQ=17.05;MQ0=11;MQRankSum=0.135;QD=3.05;ReadPosRankSum=-0.244;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-548K12.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430646    GT:AD:DP:GQ:PL    0/1:16,7:23:99:100,0,165
7    57887977    rs139794014    A    G    160.12    MQFilter40    AB=0.24;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.296;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9691;MQ=15.69;MQ0=14;MQRankSum=1.296;QD=6.4;ReadPosRankSum=-0.825;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-548K12.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430646    GT:AD:DP:GQ:PL    0/1:6,19:25:25.32:190,0,25
7    57888142    .    C    A    103.93    MQFilter40;QDFilter2    AB=0.34;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.15;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9874;MQ=8.01;MQ0=82;MQRankSum=0.0;QD=1.07;ReadPosRankSum=-0.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-548K12.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430646    GT:AD:DP:GQ:PL    0/1:33,64:97:61.86:134,0,62
7    62584916    rs71565901    CT    C    692.68    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=4.461;DB;DP=64;FS=7.296;HRun=6;HaplotypeScore=176.5518;IndelType=D;MQ=59.62;MQ0=0;MQRankSum=0.12;QD=10.82;ReadPosRankSum=-1.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-196D18.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458703    GT:AD:DP:GQ:PL    0/1:36,28:64:99:732,0,969
7    62708659    .    G    A    297.67    MQFilter40    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=3.212;DP=109;Dels=0.0;FS=6.274;HRun=1;HaplotypeScore=3.7762;MQ=24.65;MQ0=21;MQRankSum=-2.641;QD=2.73;ReadPosRankSum=0.331;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SEPT7P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437076    GT:AD:DP:GQ:PL    0/1:76,33:109:99:328,0,1230
7    62915882    .    T    C    64.47    MQFilter40;QDFilter2    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.055;DP=175;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=6.0;MQ0=151;MQRankSum=-0.06;QD=0.37;ReadPosRankSum=0.477;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF734;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419494    GT:AD:DP:GQ:PL    0/1:72,103:175:72.77:94,0,73
7    62956466    rs587231    G    A    36.08    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.98;MQ0=1;MQRankSum=0.248;QD=3.61;ReadPosRankSum=1.203;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SEPT7P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434048    GT:AD:DP:GQ:PL    0/1:6,4:10:66.08:66,0,163
7    63019381    .    T    C    32.03    MQFilter40;QDFilter2    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.74;MQ0=23;MQRankSum=0.336;QD=0.97;ReadPosRankSum=-0.676;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504749    GT:AD:DP:GQ:PL    0/1:18,15:33:62.02:62,0,62
7    63020478    rs1964266    T    G    498.61    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=2.953;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.99;MQ0=2;MQRankSum=-2.987;QD=13.48;ReadPosRankSum=1.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504749    GT:AD:DP:GQ:PL    0/1:13,24:37:99:529,0,340
7    63020518    .    G    A    116.76    MQFilter40;QDFilter2    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=0.59;DP=61;Dels=0.0;FS=2.066;HRun=0;HaplotypeScore=0.6651;MQ=29.37;MQ0=19;MQRankSum=-0.142;QD=1.91;ReadPosRankSum=-0.955;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504749    GT:AD:DP:GQ:PL    0/1:43,17:61:99:147,0,482
7    63020704    rs1964267    A    C    166.52    MQFilter40    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=23;Dels=0.0;FS=10.925;HRun=2;HaplotypeScore=0.9332;MQ=26.14;MQ0=6;MQRankSum=-2.764;QD=7.24;ReadPosRankSum=-0.754;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504749    GT:AD:DP:GQ:PL    0/1:6,17:23:99:197,0,147
7    63022890    rs7456994    G    C    108.86    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.26;MQ0=0;MQRankSum=0.736;QD=18.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504749    GT:AD:DP:GQ:PL    0/1:1,5:6:24.96:139,0,25
7    63027366    rs62473970    C    T    320.24    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.217;DB;DP=38;Dels=0.0;FS=1.497;HRun=0;HaplotypeScore=0.9997;MQ=47.06;MQ0=2;MQRankSum=0.383;QD=8.43;ReadPosRankSum=-0.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504749    GT:AD:DP:GQ:PL    0/1:22,15:38:99:350,0,472
7    63027611    rs4495308    A    T    42.40    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.58;MQ0=2;MQRankSum=-1.794;QD=2.49;ReadPosRankSum=-2.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504749    GT:AD:DP:GQ:PL    0/1:10,7:17:72.39:72,0,252
7    63028180    rs2312368    G    C    462.41    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.31;MQ0=0;MQRankSum=-2.072;QD=18.5;ReadPosRankSum=0.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417666    GT:AD:DP:GQ:PL    0/1:5,20:25:59.91:492,0,60
7    63028422    rs62473972    G    C    264.68    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.55;MQ0=0;MQRankSum=-2.113;QD=20.36;ReadPosRankSum=0.254;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417666    GT:AD:DP:GQ:PL    0/1:3,10:13:86.92:295,0,87
7    63029456    rs7801231    C    T    264.36    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.558;DB;DP=21;Dels=0.0;FS=9.961;HRun=1;HaplotypeScore=0.8667;MQ=39.79;MQ0=4;MQRankSum=-1.759;QD=12.59;ReadPosRankSum=-0.251;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417666    GT:AD:DP:GQ:PL    0/1:6,15:21:99:294,0,140
7    63033332    rs62473979    G    A    38.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=19.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
7    63033440    rs59639281    G    A    40.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.55;MQ0=1;MQRankSum=1.026;QD=5.85;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417666    GT:AD:DP:GQ:PL    0/1:3,4:7:59.29:71,0,59
7    63033753    rs11296161    GC    G    126.61    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=14;FS=5.88;HRun=1;HaplotypeScore=44.8024;IndelType=D;MQ=28.19;MQ0=3;MQRankSum=-0.133;QD=6.33;ReadPosRankSum=0.667;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-965K10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417666    GT:AD:DP:GQ:PL    0/1:15,5:14:99:166,0,387
7    63175168    rs1734036    C    T    167.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.11;MQ0=2;QD=20.97;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:201,18,0
7    63175377    rs143199634    C    CT    162.64    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=31;FS=0.0;HRun=10;HaplotypeScore=133.0166;IndelType=I;MQ=36.67;MQ0=0;MQRankSum=2.011;QD=5.25;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:19,7:31:99:202,0,141
7    63175408    rs67976854    T    C    128.79    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=36.27;MQ0=0;MQRankSum=-0.212;QD=9.2;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,5:14:99:159,0,281
7    63225682    rs139029076    A    G    39.76    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.16;MQ0=1;MQRankSum=-0.406;QD=5.68;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,4:7:67.97:70,0,68
7    63225725    rs140478916    C    T    55.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=49.83;MQ0=0;MQRankSum=-1.001;QD=6.19;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,3:9:85.67:86,0,214
7    63225803    rs10265595    T    A    453.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=1;QD=30.23;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:486,39,0
7    63225821    rs141916752    A    T    206.99    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=17;Dels=0.0;FS=13.919;HRun=0;HaplotypeScore=0.0;MQ=46.77;MQ0=1;MQRankSum=-1.482;QD=12.18;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,10:17:99:237,0,205
7    63225842    rs7787730    A    T    624.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.46;MQ0=0;QD=27.16;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,22:23:51.14:658,51,0
7    63225873    rs78327784    C    T    252.93    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=24;Dels=0.0;FS=1.685;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.146;QD=10.54;ReadPosRankSum=0.79;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,10:24:99:283,0,458
7    63225986    rs7791906    T    C    1306.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.51;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1340,99,0
7    63226075    rs141336453    G    T    283.26    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.27;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.52;MQ0=0;MQRankSum=1.171;QD=7.87;ReadPosRankSum=-0.162;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,13:36:99:313,0,548
7    63226446    rs62473824    C    T    67.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=48.27;MQ0=0;MQRankSum=-0.72;QD=9.67;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:7:69.83:98,0,70
7    63226461    rs35715351    G    A    141.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.06;MQ0=0;MQRankSum=-0.573;QD=14.13;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,6:10:86.69:171,0,87
7    63226665    rs34695612    C    T    236.96    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.784;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.94;MQ0=0;MQRankSum=2.106;QD=12.47;ReadPosRankSum=1.28;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,8:19:99:267,0,282
7    63226713    rs4717148    G    A    268.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9153;MQ=50.83;MQ0=0;MQRankSum=-0.83;QD=14.11;ReadPosRankSum=0.83;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,10:19:99:298,0,170
7    63226744    rs143931352    G    A    206.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.79;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=50.17;MQ0=0;MQRankSum=1.083;QD=8.24;ReadPosRankSum=0.966;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,10:25:99:236,0,385
7    63226758    rs34722518    C    T    210.72    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=53.29;MQ0=0;MQRankSum=0.985;QD=8.78;ReadPosRankSum=-0.463;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,11:24:99:241,0,405
7    63226762    rs35303354    T    A    204.77    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.59;MQ0=0;MQRankSum=-0.067;QD=8.19;ReadPosRankSum=0.134;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,9:25:99:235,0,366
7    63226841    rs4717921    G    T    220.68    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.682;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;MQRankSum=-0.556;QD=14.71;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,8:15:99:251,0,204
7    63226899    rs4717922    C    T    94.06    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=49.83;MQ0=0;MQRankSum=0.0;QD=13.44;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,4:7:92.33:124,0,92
7    63226959    rs4717149    A    G    237.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.74;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:271,24,0
7    63227346    rs2929867    T    C    232.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.83;MQ0=2;QD=15.5;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:27.03:265,27,0
7    63227391    rs35831382    C    T    164.89    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=17;Dels=0.0;FS=12.707;HRun=1;HaplotypeScore=0.9332;MQ=36.52;MQ0=1;MQRankSum=1.376;QD=9.7;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,7:17:99:195,0,170
7    63227413    rs34100371    C    T    166.02    MQFilter40    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=13.919;HRun=0;HaplotypeScore=0.0;MQ=39.22;MQ0=0;MQRankSum=-1.482;QD=10.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,9:16:99:196,0,211
7    63227473    rs186168112    G    A    53.61    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=14;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=1.7825;MQ=35.86;MQ0=0;MQRankSum=-1.791;QD=3.83;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,7:14:83.61:84,0,149
7    63227478    rs2312650    G    A    148.62    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=1.7825;MQ=37.92;MQ0=0;MQRankSum=1.134;QD=12.38;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,8:12:80.61:179,0,81
7    63232511    rs725415    G    A    128.50    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=39.06;MQ0=0;MQRankSum=0.935;QD=9.18;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,7:14:99:158,0,145
7    63232593    rs72595807    G    A    112.63    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=28.92;MQ0=0;MQRankSum=-0.597;QD=10.24;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,7:11:86.40:143,0,86
7    63232659    rs113445606    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.5;MQ0=5;QD=5.09;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:6.02:67,6,0
7    63465799    rs71836131    CTCTTT    C    1075.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=123.8228;IndelType=D;MQ=59.25;MQ0=0;QD=53.79;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-561N12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330020    GT:AD:DP:GQ:PL    1/1:1,19:20:54.19:1118,54,0
7    63539051    rs141681310    G    A    359.59    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=37;Dels=0.0;FS=1.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=9.72;ReadPosRankSum=0.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF727;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550760    GT:AD:DP:GQ:PL    0/1:24,13:37:99:390,0,726
7    63539082    rs6962663    A    T    1251.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5767;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF727;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550760    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1284,93,0
7    63680098    rs4479992    C    T    251.21    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.164;DB;DP=46;Dels=0.0;FS=1.199;HRun=0;HaplotypeScore=0.0;MQ=59.94;MQ0=0;MQRankSum=-0.726;QD=5.34;ReadPosRankSum=1.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-468B6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429565    GT:AD:DP:GQ:PL    0/1:31,15:46:99:281,0,1006
7    63680099    rs4320434    C    A    264.51    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.609;DB;DP=48;Dels=0.0;FS=2.596;HRun=1;HaplotypeScore=0.0;MQ=59.94;MQ0=0;MQRankSum=-0.445;QD=5.51;ReadPosRankSum=1.586;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-468B6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429565    GT:AD:DP:GQ:PL    0/1:33,15:48:99:294,0,1025
7    63720784    rs112527599    GT    G    1085.61    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=7.894;DB;DP=97;FS=0.0;HRun=6;HaplotypeScore=420.6393;IndelType=D;MQ=55.38;MQ0=1;MQRankSum=-2.574;QD=11.08;ReadPosRankSum=1.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF679;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255746    GT:AD:DP:GQ:PL    0/1:55,43:97:99:1125,0,1423
7    63721073    rs12154469    A    C    67.70    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.684;QD=8.46;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF679;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255746    GT:AD:DP:GQ:PL    0/1:5,3:8:97.70:98,0,188
7    63721251    rs12154540    A    G    980.24    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=93;Dels=0.0;FS=10.42;HRun=2;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=0.083;QD=10.54;ReadPosRankSum=-0.385;SNPEFF_AMINO_ACID_CHANGE=E69G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_63721212_63721307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF679;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255746    GT:AD:DP:GQ:PL    0/1:54,38:93:99:1010,0,1744
7    63721420    rs17767341    A    G    145.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.52;ReadPosRankSum=-1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF679;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255746    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,160
7    63774584    rs812337    G    T    211.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF736;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465343    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
7    63796559    rs620631    A    C    1132.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF736;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355095    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1166,84,0
7    64004817    rs141738606    AACAC    A    1665.83    PASS    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.215;DB;DP=116;FS=7.05;HRun=0;HaplotypeScore=753.1291;IndelType=D;MQ=57.48;MQ0=0;MQRankSum=-0.941;QD=14.36;ReadPosRankSum=-1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF680;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309683    GT:AD:DP:GQ:PL    0/1:50,38:116:99:1705,0,273
7    64030498    .    G    T    580.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=-0.442;QD=12.9;ReadPosRankSum=-1.031;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-561N12.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409132    GT:AD:DP:GQ:PL    0/1:18,27:45:99:611,0,247
7    64030542    rs111845130    G    A    189.38    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.687;DB;DP=34;Dels=0.0;FS=1.67;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=0.92;QD=5.57;ReadPosRankSum=0.258;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-561N12.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409132    GT:AD:DP:GQ:PL    0/1:23,11:34:99:219,0,735
7    64152353    rs4718101    A    G    3481.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=59.58;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344930    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3481,268,0
7    64166537    rs56337731    G    C    136.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344930    GT:AD:DP:GQ:PL    1/1:0,8:8:20.94:170,21,0
7    64166538    rs7804015    T    A    136.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344930    GT:AD:DP:GQ:PL    1/1:0,8:8:20.94:170,21,0
7    64166642    rs35661712    T    TG    1796.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=81.7297;IndelType=I;MQ=61.1;MQ0=0;QD=46.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344930    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1839,117,0
7    64168806    rs4718103    T    C    1676.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.361;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-1.361;QD=27.94;ReadPosRankSum=-0.314;SNPEFF_AMINO_ACID_CHANGE=T708;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64166702_64171404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF107;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344930    GT:AD:DP:GQ:PL    1/1:3,57:60:84.66:1709,85,0
7    64169019    rs4717205    G    A    538.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_AMINO_ACID_CHANGE=E779;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64166702_64171404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF107;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344930    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:572,42,0
7    64169061    rs4717206    G    A    441.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360117    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:475,36,0
7    64254791    rs10949938    G    T    348.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=34.89;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_64254766_64254949;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:382,30,0
7    64254901    rs11983033    T    C    3025.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.04;MQ0=0;QD=31.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430838    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3058,229,0
7    64275164    rs7791951    A    C    308.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:342,27,0
7    64275284    rs7809431    C    T    2276.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.42;MQ0=0;QD=28.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2310,178,0
7    64275548    rs10236928    A    G    533.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9327;MQ=60.0;MQ0=0;MQRankSum=-1.302;QD=31.39;ReadPosRankSum=1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:1,15:16:45.14:567,45,0
7    64276089    rs9654821    A    G    1597.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1630,123,0
7    64276219    .    C    T    41.51    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
7    64291225    rs6460193    G    T    1851.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1885,141,0
7    64291244    rs7787287    T    C    2343.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.36;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2377,193,0
7    64291267    rs6460194    A    T    3828.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3829,280,0
7    64291333    rs4483043    T    A    5770.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.59;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=F75Y;SNPEFF_CODON_CHANGE=tTt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64291318_64291454;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000494380    GT:AD:DP:GQ:PL    1/1:1,168:170:99:5771,424,0
7    64291991    rs4236203    T    A    2294.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=36.42;SNPEFF_AMINO_ACID_CHANGE=F124Y;SNPEFF_CODON_CHANGE=tTt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64291829_64292580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2328,178,0
7    64293492    rs1464925    C    T    1869.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1902,138,0
7    64293538    rs1464926    A    C    2019.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307355    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2053,157,0
7    64313677    rs62458431    C    T    1383.49    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=3.539;DB;DP=73;Dels=0.0;FS=0.972;HRun=0;HaplotypeScore=1.9644;MQ=59.05;MQ0=0;MQRankSum=-0.233;QD=18.95;ReadPosRankSum=0.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SEPHS1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426891    GT:AD:DP:GQ:PL    0/1:26,47:73:99:1413,0,727
7    64313784    rs1815164    A    G    932.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.85;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SEPHS1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426891    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:965,75,0
7    64348740    rs10231738    C    T    85.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF273;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471926    GT:AD:DP:GQ:PL    0/1:6,4:10:99:115,0,217
7    64349077    rs6460207    G    C    791.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF273;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471926    GT:AD:DP:GQ:PL    1/1:0,26:26:72.17:825,72,0
7    64349160    rs6957325    C    G    252.59    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=17;Dels=0.0;FS=8.141;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.914;QD=14.86;ReadPosRankSum=0.048;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF273;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471926    GT:AD:DP:GQ:PL    0/1:9,8:17:99:283,0,280
7    64378806    rs7796966    C    T    296.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7334;MQ=59.22;MQ0=0;MQRankSum=-0.548;QD=12.37;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF273;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319636    GT:AD:DP:GQ:PL    0/1:12,12:24:99:327,0,357
7    64378898    rs7796024    G    A    150.63    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF273;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319636    GT:AD:DP:GQ:PL    0/1:1,5:6:19.74:181,0,20
7    64389089    rs2017252    A    C    456.01    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.016;DB;DP=33;Dels=0.0;FS=8.695;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=13.82;ReadPosRankSum=0.396;SNPEFF_AMINO_ACID_CHANGE=E396D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64388032_64389416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF273;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319636    GT:AD:DP:GQ:PL    0/1:17,16:33:99:486,0,508
7    64437121    rs12530729    C    G    72.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.43;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:102,0,69
7    64437406    rs4607487    A    G    2569.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2603,193,0
7    64437648    rs10949955    G    A    177.89    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=13.68;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    0/1:7,6:13:99:208,0,248
7    64437734    rs62455643    T    C    72.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.9;MQ0=0;MQRankSum=-0.248;QD=8.03;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    0/1:6,3:9:99:102,0,146
7    64437820    rs7790578    G    C    492.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.7;MQ0=0;QD=32.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:525,39,0
7    64437832    rs7810102    A    T    520.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=57.7;MQ0=0;QD=34.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:554,42,0
7    64438403    rs4718175    G    A    629.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487644    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:663,54,0
7    64438667    rs1404453    G    A    1999.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.7362;MQ=59.62;MQ0=0;MQRankSum=1.675;QD=32.78;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=R428*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_7_64438360_64439914;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    1/1:1,60:61:99:2033,150,0
7    64439613    rs3807068    T    G    555.95    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.092;DB;DP=41;Dels=0.0;FS=6.637;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.32;QD=13.56;ReadPosRankSum=0.51;SNPEFF_AMINO_ACID_CHANGE=K112N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64438360_64439914;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    0/1:22,19:41:99:586,0,770
7    64439701    rs3807069    C    T    416.01    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.767;QD=12.61;ReadPosRankSum=-2.417;SNPEFF_AMINO_ACID_CHANGE=C83Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64438360_64439914;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    0/1:19,14:33:99:446,0,656
7    64439938    rs1852016    C    T    1019.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487644    GT:AD:DP:GQ:PL    1/1:0,28:28:78.24:1052,78,0
7    64440040    rs1524821    T    G    120.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487644    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:153,12,0
7    64441551    rs1540833    T    C    83.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282869    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:114,0,29
7    64451558    rs11771269    G    A    142.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=14;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=10.16;ReadPosRankSum=0.555;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487644    GT:AD:DP:GQ:PL    0/1:7,7:14:99:172,0,210
7    64451656    rs4718177    G    A    72.57    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=9.07;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=V583;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64451187_64453792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERV3-1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394323    GT:AD:DP:GQ:PL    0/1:5,3:8:99:103,0,143
7    64451699    rs4717229    T    C    174.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=N569S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64451187_64453792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERV3-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394323    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
7    64451963    rs4618579    T    C    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_AMINO_ACID_CHANGE=N481S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64451187_64453792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERV3-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394323    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    64452830    rs34639489    C    T    1666.92    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.511;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7453;MQ=59.64;MQ0=0;MQRankSum=0.457;QD=14.37;ReadPosRankSum=0.746;SNPEFF_AMINO_ACID_CHANGE=C192Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64451187_64453792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERV3-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394323    GT:AD:DP:GQ:PL    0/1:55,60:115:99:1697,0,1680
7    64453136    rs6460219    G    A    1467.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=35.79;SNPEFF_AMINO_ACID_CHANGE=T90I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64451187_64453792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERV3-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394323    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1500,111,0
7    64525211    rs1965536    A    G    380.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.65;MQ0=0;QD=31.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCT6P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419314    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:413,36,0
7    64532721    .    C    A    53.16    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC073210.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501153    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    64613526    .    C    A    103.86    MQFilter40;QDFilter2    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=0.119;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2282;MQ=6.56;MQ0=104;MQRankSum=-0.179;QD=0.81;ReadPosRankSum=0.417;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=INTS4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297235    GT:AD:DP:GQ:PL    0/1:95,32:128:40.14:134,0,40
7    64639915    .    AC    A    66.01    QDFilter2    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=0.442;DP=24;FS=0.0;HRun=14;HaplotypeScore=143.4168;IndelType=D;MQ=41.33;MQ0=5;MQRankSum=0.353;QD=1.94;ReadPosRankSum=-1.413;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=INTS4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297235    GT:AD:DP:GQ:PL    0/1:28,6:24:99:105,0,135
7    64639920    rs73699606    C    T    117.67    HaplotypeScoreFilter13    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.404;DB;DP=32;Dels=0.0;FS=10.086;HRun=0;HaplotypeScore=20.1083;MQ=42.41;MQ0=4;MQRankSum=0.534;QD=3.68;ReadPosRankSum=2.003;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=INTS4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297235    GT:AD:DP:GQ:PL    0/1:18,13:32:71.12:148,0,71
7    64639965    rs113933022    G    A    52.83    MQFilter40    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=37.43;MQ0=3;MQRankSum=1.473;QD=2.78;ReadPosRankSum=-0.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=INTS4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297235    GT:AD:DP:GQ:PL    0/1:13,5:19:82.82:83,0,243
7    64639994    rs145031228    C    T    62.63    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.75;MQ0=2;MQRankSum=-1.067;QD=6.26;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=INTS4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297235    GT:AD:DP:GQ:PL    0/1:2,8:10:64.21:93,0,64
7    64661070    rs62469299    G    A    277.29    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=40.29;MQ0=4;MQRankSum=0.365;QD=7.11;ReadPosRankSum=1.859;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=INTS4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438455    GT:AD:DP:GQ:PL    0/1:25,14:39:99:307,0,684
7    64672804    rs147016820    A    G    258.38    MQFilter40    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.703;DB;DP=42;Dels=0.0;FS=3.736;HRun=1;HaplotypeScore=0.9665;MQ=21.13;MQ0=9;MQRankSum=0.817;QD=6.15;ReadPosRankSum=-0.057;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=INTS4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297235    GT:AD:DP:GQ:PL    0/1:22,20:42:99:288,0,172
7    64863392    rs10265083    C    T    762.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.033;DB;DP=60;Dels=0.0;FS=0.996;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.36;QD=12.7;ReadPosRankSum=0.51;SNPEFF_AMINO_ACID_CHANGE=A122V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64863254_64866038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF92;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328747    GT:AD:DP:GQ:PL    0/1:35,25:60:99:792,0,1003
7    64864607    rs10239197    G    A    777.74    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.402;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=11.61;ReadPosRankSum=0.648;SNPEFF_AMINO_ACID_CHANGE=R451H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_64863254_64866038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF92;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431504    GT:AD:DP:GQ:PL    0/1:36,31:67:99:808,0,1124
7    64864800    rs4122883    A    G    499.13    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.328;QD=14.26;ReadPosRankSum=0.776;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328747    GT:AD:DP:GQ:PL    0/1:17,18:35:99:529,0,557
7    64864912    rs3846972    A    C    73.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328747    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,139
7    64960031    rs9691010    C    T    521.95    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.338;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=56.25;MQ0=3;MQRankSum=0.016;QD=13.05;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,18:40:99:552,0,487
7    65084152    rs6978207    C    T    473.11    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.282;DB;DP=28;Dels=0.0;FS=6.058;HRun=0;HaplotypeScore=0.9983;MQ=54.75;MQ0=0;MQRankSum=-1.317;QD=16.9;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-157F18.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515547    GT:AD:DP:GQ:PL    0/1:11,17:28:99:503,0,360
7    65084226    rs6944066    C    T    132.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.02;MQ0=0;MQRankSum=-0.572;QD=16.59;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-157F18.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515547    GT:AD:DP:GQ:PL    0/1:2,6:8:54.14:163,0,54
7    65084229    rs6963676    A    C    124.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.02;MQ0=0;MQRankSum=-1.067;QD=15.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-157F18.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515547    GT:AD:DP:GQ:PL    0/1:2,6:8:60.02:154,0,60
7    65159983    rs147104756    A    G    30.55    MQFilter40;QDFilter2    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.599;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.77;MQ0=4;MQRankSum=-1.181;QD=1.27;ReadPosRankSum=-1.087;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430126    GT:AD:DP:GQ:PL    0/1:16,7:24:60.54:61,0,477
7    65173563    rs78275764    G    A    375.60    MQFilter40    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.988;DB;DP=59;Dels=0.0;FS=4.906;HRun=2;HaplotypeScore=0.9578;MQ=33.32;MQ0=4;MQRankSum=-4.445;QD=6.37;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430126    GT:AD:DP:GQ:PL    0/1:33,26:59:99:406,0,867
7    65173706    rs2690436    T    C    36.73    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=35.27;MQ0=2;MQRankSum=-0.55;QD=4.08;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430126    GT:AD:DP:GQ:PL    0/1:5,4:9:66.73:67,0,96
7    65220463    rs62469884    T    C    1411.67    MQFilter40    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=140;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=1.5115;MQ=39.55;MQ0=13;MQRankSum=0.837;QD=10.08;ReadPosRankSum=-0.397;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CCT6P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434500    GT:AD:DP:GQ:PL    0/1:85,54:140:99:1442,0,1994
7    65220697    rs4718276    G    A    1296.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.71;MQ0=1;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORA22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383907    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1330,105,0
7    65425894    rs9530    A    G    1625.62    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.966;DB;DP=105;Dels=0.0;FS=1.84;HRun=2;HaplotypeScore=0.9916;MQ=58.45;MQ0=0;MQRankSum=0.42;QD=15.48;ReadPosRankSum=0.068;SNPEFF_AMINO_ACID_CHANGE=L503P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_65425688_65426050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUSB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421103    GT:AD:DP:GQ:PL    0/1:43,62:105:99:1656,0,1408
7    65432567    rs1880555    T    C    68.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=9.79;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304895    GT:AD:DP:GQ:PL    0/1:4,3:7:98.52:99,0,140
7    65439879    rs781143    G    C    657.62    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.474;DB;DP=67;Dels=0.0;FS=0.955;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.069;QD=9.82;ReadPosRankSum=0.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429291    GT:AD:DP:GQ:PL    0/1:38,29:67:99:688,0,1069
7    65444359    rs138910486    T    TGA    483.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=56.7218;IndelType=I;MQ=58.08;MQ0=0;MQRankSum=-0.387;QD=21.99;ReadPosRankSum=1.655;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429291    GT:AD:DP:GQ:PL    0/1:11,11:22:99:523,0,349
7    65556936    rs1167406    G    C    730.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.347;QD=14.05;ReadPosRankSum=-1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362000    GT:AD:DP:GQ:PL    0/1:26,26:52:99:761,0,694
7    65557448    rs67457607    GA    G    36.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=12;FS=0.0;HRun=16;HaplotypeScore=94.5253;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=-0.143;QD=3.02;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362000    GT:AD:DP:GQ:PL    0/1:5,6:12:75.27:75,0,82
7    65579722    rs6946143    G    T    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_65579591_65579957;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRCP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360415    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
7    65580166    rs35034167    C    G    99.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=16.63;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338592    GT:AD:DP:GQ:PL    0/1:2,4:6:48.39:130,0,48
7    65599246    rs66563699    CT    C    506.66    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.267;DB;DP=131;FS=3.084;HRun=15;HaplotypeScore=675.5342;IndelType=D;MQ=56.94;MQ0=0;MQRankSum=-0.602;QD=3.87;ReadPosRankSum=2.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338592    GT:AD:DP:GQ:PL    0/1:73,36:131:99:546,0,747
7    65599446    rs6958484    G    A    601.66    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.541;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.62;QD=18.8;ReadPosRankSum=0.861;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338592    GT:AD:DP:GQ:PL    0/1:14,18:32:99:632,0,427
7    65610614    rs316324    A    G    88.13    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=9.79;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338592    GT:AD:DP:GQ:PL    0/1:5,4:9:99:118,0,181
7    65617971    rs316305    G    A    1686.12    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=4.412;DB;DP=117;Dels=0.0;FS=2.487;HRun=0;HaplotypeScore=2.1766;MQ=59.25;MQ0=0;MQRankSum=1.995;QD=14.41;ReadPosRankSum=-0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398684    GT:AD:DP:GQ:PL    0/1:59,57:117:99:1716,0,1677
7    65817333    rs709595    G    C    136.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=12;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=11.4;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304842    GT:AD:DP:GQ:PL    0/1:7,5:12:99:167,0,202
7    65842221    rs11765965    A    G    116.18    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.36;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490159    GT:AD:DP:GQ:PL    0/1:1,5:6:18.39:146,0,18
7    65842543    rs112115083    C    CAT    596.45    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=2.803;DB;DP=23;FS=1.824;HRun=0;HaplotypeScore=98.6331;IndelType=I;MQ=59.88;MQ0=0;MQRankSum=-0.031;QD=25.93;ReadPosRankSum=-0.346;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490159    GT:AD:DP:GQ:PL    0/1:9,13:23:99:635,0,357
7    65918406    rs188294700    G    A    244.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.363;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.153;QD=15.29;ReadPosRankSum=-0.893;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GS1-124K5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411606    GT:AD:DP:GQ:PL    0/1:8,8:16:99:275,0,234
7    65918707    rs12698520    C    A    157.25    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.21;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GS1-124K5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442578    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:187,0,24
7    65970528    rs3735147    A    C    460.23    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.398;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.64;MQ0=0;MQRankSum=-1.819;QD=8.85;ReadPosRankSum=0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GS1-124K5.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324712    GT:AD:DP:GQ:PL    0/1:31,21:52:99:490,0,1050
7    65976610    rs6950137    G    A    369.87    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=14.23;ReadPosRankSum=0.082;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-124K5.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448776    GT:AD:DP:GQ:PL    0/1:12,14:26:99:400,0,313
7    65976634    rs6970860    A    G    358.69    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.854;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.753;QD=14.95;ReadPosRankSum=0.753;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-124K5.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448776    GT:AD:DP:GQ:PL    0/1:11,13:24:99:389,0,317
7    65983529    rs11763189    G    A    102.28    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.63;MQ0=0;MQRankSum=-1.2;QD=6.02;ReadPosRankSum=-1.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-124K5.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448776    GT:AD:DP:GQ:PL    0/1:9,8:17:99:132,0,245
7    65983615    rs11763224    G    T    119.47    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=53.81;MQ0=0;MQRankSum=-0.717;QD=10.86;ReadPosRankSum=-1.186;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-124K5.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448776    GT:AD:DP:GQ:PL    0/1:6,5:11:99:149,0,199
7    65983700    .    C    T    110.02    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.18;MQ0=0;MQRankSum=0.55;QD=13.75;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-124K5.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448776    GT:AD:DP:GQ:PL    0/1:3,5:8:99:140,0,105
7    66018941    rs10107    G    A    692.94    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=3.573;DB;DP=47;Dels=0.0;FS=4.875;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=1.014;QD=14.74;ReadPosRankSum=0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC006001.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325130    GT:AD:DP:GQ:PL    0/1:25,22:47:99:723,0,721
7    66019631    rs801208    A    G    579.30    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=37;Dels=0.0;FS=3.106;HRun=0;HaplotypeScore=0.0;MQ=54.02;MQ0=0;MQRankSum=-0.966;QD=15.66;ReadPosRankSum=0.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC006001.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325130    GT:AD:DP:GQ:PL    0/1:16,21:37:99:609,0,537
7    66021966    rs801206    C    G    212.77    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.28;QD=11.2;ReadPosRankSum=-0.041;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC006001.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325130    GT:AD:DP:GQ:PL    0/1:11,8:19:99:243,0,378
7    66022144    rs801205    C    A    132.80    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=13;Dels=0.0;FS=7.16;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=10.22;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP4-756H11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455031    GT:AD:DP:GQ:PL    0/1:7,6:13:99:163,0,220
7    66038363    rs1796225    C    G    266.48    MQFilter40    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=35.33;MQ0=2;MQRankSum=0.753;QD=10.25;ReadPosRankSum=-0.579;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-124K5.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428370    GT:AD:DP:GQ:PL    0/1:15,11:26:99:296,0,309
7    66038472    rs13240501    G    A    556.73    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.504;DB;DP=27;Dels=0.0;FS=1.69;HRun=0;HaplotypeScore=0.0;MQ=45.42;MQ0=0;MQRankSum=-1.142;QD=20.62;ReadPosRankSum=-0.186;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GS1-124K5.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428370    GT:AD:DP:GQ:PL    0/1:8,19:27:99:587,0,245
7    66098482    rs3764903    G    A    176.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=15;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=11.75;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275532    GT:AD:DP:GQ:PL    0/1:9,6:15:99:206,0,294
7    66274375    rs144655186    C    CAG    577.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=28.929;IndelType=I;MQ=60.83;MQ0=0;QD=44.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539561    GT:AD:DP:GQ:PL    1/1:2,11:13:33.11:620,33,0
7    66289040    rs6460315    C    T    108.22    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.84;MQ0=0;MQRankSum=-2.388;QD=6.01;ReadPosRankSum=0.796;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-792A8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434721    GT:AD:DP:GQ:PL    0/1:12,6:18:99:138,0,391
7    66407130    rs3735155    G    T    90.95    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=6.06;ReadPosRankSum=1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341567    GT:AD:DP:GQ:PL    0/1:11,4:15:99:121,0,367
7    66459145    rs11763269    A    C    1589.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.74;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246868    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1622,120,0
7    66460011    rs7778881    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246868    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    66463195    rs35267163    A    AT    1059.10    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.489;DB;DP=103;FS=0.93;HRun=10;HaplotypeScore=307.9737;IndelType=I;MQ=59.55;MQ0=0;MQRankSum=1.869;QD=10.28;ReadPosRankSum=-1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    0/1:57,45:103:99:1098,0,721
7    66463938    rs41303396    G    A    603.95    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.73;DB;DP=38;Dels=0.0;FS=4.865;HRun=2;HaplotypeScore=2.9049;MQ=52.38;MQ0=0;MQRankSum=-0.458;QD=15.89;ReadPosRankSum=0.133;SNPEFF_AMINO_ACID_CHANGE=A90;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_66463804_66463941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    0/1:16,22:38:99:634,0,484
7    66474349    rs4718441    T    C    1458.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=51.02;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1491,120,0
7    66474380    rs4717338    A    T    347.36    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.542;DB;DP=46;Dels=0.0;FS=2.791;HRun=1;HaplotypeScore=0.5784;MQ=53.15;MQ0=0;MQRankSum=-4.322;QD=7.55;ReadPosRankSum=0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    0/1:30,16:46:99:377,0,931
7    66474559    rs4717339    G    C    1308.68    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.812;DB;DP=105;Dels=0.0;FS=1.798;HRun=0;HaplotypeScore=0.7887;MQ=56.54;MQ0=0;MQRankSum=-1.242;QD=12.46;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    0/1:56,48:105:99:1339,0,1882
7    66474695    rs4717340    G    A    559.41    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.779;DB;DP=89;Dels=0.0;FS=3.961;HRun=1;HaplotypeScore=1.5616;MQ=48.26;MQ0=3;MQRankSum=-6.515;QD=6.29;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    0/1:61,28:89:99:589,0,1985
7    66520726    rs72191590    C    CA    61.50    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=14;FS=0.0;HRun=15;HaplotypeScore=95.9507;IndelType=I;MQ=52.03;MQ0=0;MQRankSum=1.0;QD=4.39;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    0/1:8,5:14:32.91:101,0,33
7    66532235    rs2711910    A    G    1373.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=46.95;MQ0=2;QD=25.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    1/1:0,52:53:99:1407,117,0
7    66648029    rs57386346    G    T    561.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DB;DP=40;Dels=0.0;FS=4.664;HRun=0;HaplotypeScore=0.9665;MQ=58.11;MQ0=0;MQRankSum=-0.69;QD=14.03;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359626    GT:AD:DP:GQ:PL    0/1:20,20:40:99:591,0,658
7    66747718    rs117258145    A    G    406.65    MQFilter40    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.344;DB;DP=134;DS;Dels=0.0;FS=1.066;HRun=0;HaplotypeScore=2.7159;MQ=34.81;MQ0=2;MQRankSum=-1.372;QD=3.03;ReadPosRankSum=-1.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275546    GT:AD:DP:GQ:PL    0/1:106,27:134:99:437,0,1913
7    66751465    rs6962577    C    T    980.77    MQFilter40    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=2.361;DB;DP=158;Dels=0.0;FS=5.812;HRun=1;HaplotypeScore=7.2442;MQ=28.54;MQ0=35;MQRankSum=-0.319;QD=6.21;ReadPosRankSum=0.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PMS2P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275546    GT:AD:DP:GQ:PL    0/1:98,58:158:99:1011,0,1377
7    66785029    rs2537522    G    T    264.98    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.642;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.8;MQ0=0;MQRankSum=-1.395;QD=9.14;ReadPosRankSum=-0.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416602    GT:AD:DP:GQ:PL    0/1:17,12:29:99:295,0,555
7    70194024    rs4718988    G    A    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342771    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:70,0,68
7    70230863    rs6959436    G    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342771    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
7    70230905    rs6959459    G    C    86.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342771    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
7    70231070    rs2293509    C    T    303.21    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.178;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.746;QD=14.44;ReadPosRankSum=-0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342771    GT:AD:DP:GQ:PL    0/1:9,12:21:99:333,0,192
7    70233139    rs3750170    G    A    480.44    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.762;DB;DP=30;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.145;QD=16.01;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342771    GT:AD:DP:GQ:PL    0/1:14,16:30:99:510,0,463
7    70238858    rs55838430    G    C    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483297    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
7    70249868    rs3817575    G    A    283.20    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=2.355;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.996;QD=15.73;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464768    GT:AD:DP:GQ:PL    0/1:7,11:18:99:313,0,166
7    70249908    rs2293504    C    T    386.74    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.414;DB;DP=27;Dels=0.0;FS=2.187;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.489;QD=14.32;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464768    GT:AD:DP:GQ:PL    0/1:13,14:27:99:417,0,392
7    70250125    rs2293503    T    C    308.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464768    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:341,27,0
7    70252185    rs2293500    A    G    806.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498384    GT:AD:DP:GQ:PL    1/1:0,28:28:66.18:839,66,0
7    70254674    rs941346    G    T    366.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.596;DB;DP=29;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=12.62;ReadPosRankSum=-1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498384    GT:AD:DP:GQ:PL    0/1:14,14:29:99:396,0,492
7    70255115    rs113194983    C    T    70.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.922;QD=10.14;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=Y947;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_70254734_70257489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUTS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406775    GT:AD:DP:GQ:PL    0/1:2,5:7:66.19:101,0,66
7    70598059    rs2903458    A    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
7    70598132    rs6976185    C    T    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    70765503    rs7806503    C    G    481.88    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.677;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.48;MQ0=0;MQRankSum=-0.283;QD=10.95;ReadPosRankSum=-1.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    0/1:25,18:44:99:512,0,737
7    70853018    rs1859525    A    G    84.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
7    70853118    rs77859267    C    T    149.61    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=18.7;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    0/1:3,5:8:99:180,0,102
7    70880867    rs79242556    A    G    238.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.884;QD=15.9;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    0/1:6,9:15:99:268,0,159
7    70885883    rs11455717    C    CT    2467.89    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.489;DB;DP=144;FS=4.344;HRun=1;HaplotypeScore=361.5659;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=-0.567;QD=17.14;ReadPosRankSum=0.989;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447516    GT:AD:DP:GQ:PL    0/1:77,67:144:99:2507,0,2424
7    70886107    rs11455716    G    GC    1081.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=2;HaplotypeScore=69.7358;IndelType=I;MQ=58.33;MQ0=0;QD=38.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    1/1:1,27:28:78.26:1124,78,0
7    71031469    rs4719152    A    G    95.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=15.87;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    0/1:2,4:6:44.89:125,0,45
7    71036473    rs10277319    C    T    901.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:935,72,0
7    71053333    rs1525718    G    A    845.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.619;QD=30.19;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    1/1:1,27:28:49.52:878,50,0
7    71134768    rs525809    A    G    103.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:136,12,0
7    71135192    rs2302440    A    G    1388.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1422,105,0
7    71176900    rs887584    G    A    257.17    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.553;QD=9.89;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333538    GT:AD:DP:GQ:PL    0/1:16,10:26:99:287,0,569
7    71571436    rs10950296    G    C    219.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329008    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:253,18,0
7    71743519    rs73129558    G    C    84.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.727;QD=14.14;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329008    GT:AD:DP:GQ:PL    0/1:2,4:6:30.61:115,0,31
7    72296847    rs113448761    T    C    247.92    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=26;Dels=0.0;FS=9.161;HRun=1;HaplotypeScore=0.0;MQ=55.04;MQ0=0;MQRankSum=-0.29;QD=9.54;ReadPosRankSum=1.344;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TYW1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435769    GT:AD:DP:GQ:PL    0/1:16,10:26:99:278,0,556
7    72300332    rs2240537    G    A    310.31    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.0;MQ0=0;MQRankSum=-3.107;QD=5.17;ReadPosRankSum=-0.219;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=SBDSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415772    GT:AD:DP:GQ:PL    0/1:41,19:60:99:340,0,1234
7    72301117    rs67714297    CG    C    95.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=9;HaplotypeScore=12.3043;IndelType=D;MQ=60.0;MQ0=0;QD=19.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=SBDSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415772    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:137,15,0
7    72304470    rs5884895    GT    G    431.29    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.692;DB;DP=34;FS=1.377;HRun=1;HaplotypeScore=102.3557;IndelType=D;MQ=54.67;MQ0=0;MQRankSum=-0.227;QD=12.32;ReadPosRankSum=-1.277;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=SBDSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415772    GT:AD:DP:GQ:PL    0/1:20,15:34:99:470,0,858
7    72334588    rs3873461    A    G    320.92    MQFilter40    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.758;DB;DP=97;Dels=0.0;FS=1.735;HRun=0;HaplotypeScore=3.4398;MQ=20.1;MQ0=21;MQRankSum=0.687;QD=3.31;ReadPosRankSum=0.081;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC005488.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355920    GT:AD:DP:GQ:PL    0/1:61,34:97:99:351,0,527
7    72334607    rs28493684    T    C    1125.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7262;MQ=18.95;MQ0=27;QD=11.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC005488.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355920    GT:AD:DP:GQ:PL    1/1:0,99:99:99:1159,111,0
7    72334621    rs3873462    C    A    1777.52    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.092;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5859;MQ=27.18;MQ0=23;MQRankSum=0.941;QD=15.46;ReadPosRankSum=-0.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC005488.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355920    GT:AD:DP:GQ:PL    1/1:6,109:115:99:1811,159,0
7    72334630    rs3873463    C    G    728.62    MQFilter40    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.789;DB;DP=120;Dels=0.0;FS=5.246;HRun=0;HaplotypeScore=2.6387;MQ=30.77;MQ0=22;MQRankSum=-0.061;QD=6.07;ReadPosRankSum=-0.275;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AC005488.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355920    GT:AD:DP:GQ:PL    0/1:73,47:120:99:759,0,1175
7    72413389    rs62463428    G    C    174.63    MQFilter40;QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.309;DB;DP=91;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.0;MQ=21.02;MQ0=47;MQRankSum=-0.566;QD=1.92;ReadPosRankSum=-0.514;SNPEFF_AMINO_ACID_CHANGE=G688R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72412376_72414061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257622    GT:AD:DP:GQ:PL    0/1:70,21:91:99:205,0,811
7    72413443    rs62463429    G    A    498.94    MQFilter40    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.519;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=33.86;MQ0=31;MQRankSum=-0.409;QD=5.25;ReadPosRankSum=-1.272;SNPEFF_AMINO_ACID_CHANGE=A706T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72412376_72414061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257622    GT:AD:DP:GQ:PL    0/1:53,42:95:99:529,0,979
7    72413581    rs71554687    G    A    267.43    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.502;DB;DP=101;Dels=0.0;FS=19.02;HRun=0;HaplotypeScore=1.9157;MQ=49.56;MQ0=5;MQRankSum=-6.4;QD=2.65;ReadPosRankSum=-0.084;SNPEFF_AMINO_ACID_CHANGE=V1017I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72412376_72414061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434423    GT:AD:DP:GQ:PL    0/1:75,26:101:99:297,0,2344
7    72413593    rs71554688    T    C    187.69    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=0.175;DB;DP=91;Dels=0.0;FS=25.302;HRun=0;HaplotypeScore=0.0;MQ=49.62;MQ0=4;MQRankSum=-5.602;QD=2.06;ReadPosRankSum=0.48;SNPEFF_AMINO_ACID_CHANGE=Y1021H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72412376_72414061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434423    GT:AD:DP:GQ:PL    0/1:68,23:91:99:218,0,2142
7    72416333    rs237934    C    G    222.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.59;MQ0=0;QD=24.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257622    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:255,21,0
7    72418963    rs7056    T    C    647.77    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=104;Dels=0.0;FS=0.895;HRun=1;HaplotypeScore=0.5784;MQ=46.51;MQ0=15;MQRankSum=-4.784;QD=6.23;ReadPosRankSum=1.439;SNPEFF_AMINO_ACID_CHANGE=L985P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72418867_72421979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395270    GT:AD:DP:GQ:PL    0/1:59,45:104:99:678,0,1751
7    72419420    .    A    C    156.10    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.91;DP=30;Dels=0.0;FS=4.075;HRun=1;HaplotypeScore=0.8667;MQ=46.84;MQ0=0;MQRankSum=-1.645;QD=5.2;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257622    GT:AD:DP:GQ:PL    0/1:22,7:30:99:186,0,673
7    72436652    .    A    G    116.82    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.989;DP=22;Dels=0.0;FS=6.107;HRun=1;HaplotypeScore=0.0;MQ=29.12;MQ0=4;MQRankSum=0.906;QD=5.31;ReadPosRankSum=-0.091;SNPEFF_AMINO_ACID_CHANGE=W13R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72436290_72436706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285805    GT:AD:DP:GQ:PL    0/1:12,10:22:99:147,0,276
7    72483668    rs72610122    A    G    5118.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1557;MQ=41.32;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000364412    GT:AD:DP:GQ:PL    1/1:1,157:158:99:5119,412,0
7    72604351    rs78715693    G    T    106.04    MQFilter40    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.32;MQ0=6;MQRankSum=0.762;QD=7.07;ReadPosRankSum=1.666;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-396K3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453092    GT:AD:DP:GQ:PL    0/1:2,13:15:26.35:136,0,26
7    72711133    rs148362145    C    T    120.80    MQFilter40    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=49;Dels=0.0;FS=1.476;HRun=0;HaplotypeScore=1.8245;MQ=26.36;MQ0=3;MQRankSum=-1.553;QD=2.47;ReadPosRankSum=-0.295;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POM121B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380760    GT:AD:DP:GQ:PL    0/1:36,13:49:99:151,0,641
7    72711167    .    G    A    150.44    MQFilter40    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=2.102;DP=60;Dels=0.0;FS=1.38;HRun=0;HaplotypeScore=1.6498;MQ=24.08;MQ0=5;MQRankSum=-1.133;QD=2.51;ReadPosRankSum=-0.455;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=POM121B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380760    GT:AD:DP:GQ:PL    0/1:40,18:60:99:180,0,607
7    72711816    .    G    A    355.69    MQFilter40    AC=2;AF=1.00;AN=2;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.9;MQ0=32;QD=7.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428206    GT:AD:DP:GQ:PL    1/1:20,25:45:36.07:389,36,0
7    72711867    rs62465076    A    G    629.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=25.21;MQ0=15;QD=17.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428206    GT:AD:DP:GQ:PL    1/1:2,34:36:57.15:662,57,0
7    72711986    rs62465077    G    T    142.41    MQFilter40    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.383;DB;DP=39;Dels=0.0;FS=10.236;HRun=0;HaplotypeScore=0.734;MQ=39.63;MQ0=3;MQRankSum=-4.776;QD=3.65;ReadPosRankSum=0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428206    GT:AD:DP:GQ:PL    0/1:23,16:39:99:172,0,817
7    72711991    rs62465078    C    T    127.78    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.234;DB;DP=37;Dels=0.0;FS=7.147;HRun=0;HaplotypeScore=0.734;MQ=40.05;MQ0=3;MQRankSum=-4.631;QD=3.45;ReadPosRankSum=-0.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428206    GT:AD:DP:GQ:PL    0/1:22,15:37:99:158,0,766
7    72738350    rs66845225    C    CG    897.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=59.7081;IndelType=I;MQ=51.53;MQ0=0;QD=39.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333149    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:939,66,0
7    72738749    rs28626137    A    G    635.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.144;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9951;MQ=47.13;MQ0=0;MQRankSum=-0.578;QD=24.42;ReadPosRankSum=1.589;SNPEFF_AMINO_ACID_CHANGE=W13R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72738387_72738803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333149    GT:AD:DP:GQ:PL    1/1:1,25:26:23.20:668,23,0
7    72738762    rs6980258    C    T    643.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.58;MQ0=0;QD=22.18;SNPEFF_AMINO_ACID_CHANGE=L8;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72738387_72738803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333149    GT:AD:DP:GQ:PL    1/1:0,29:29:57.17:676,57,0
7    72738763    rs6980124    A    G    648.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.97;MQ0=0;QD=21.6;SNPEFF_AMINO_ACID_CHANGE=L8P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_72738387_72738803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333149    GT:AD:DP:GQ:PL    1/1:0,30:30:57.17:681,57,0
7    72742181    rs4717749    T    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=20.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
7    72743983    rs7801936    C    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437013    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    72755520    rs4999954    T    C    68.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.37;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429879    GT:AD:DP:GQ:PL    0/1:3,3:6:98.24:98,0,107
7    72816986    rs185244525    T    G    120.31    HaplotypeScoreFilter13    AB=0.289;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.239;DB;DP=45;Dels=0.04;FS=6.69;HRun=4;HaplotypeScore=16.2058;MQ=41.49;MQ0=0;MQRankSum=-4.509;QD=2.56;ReadPosRankSum=3.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000365165    GT:AD:DP:GQ:PL    0/1:13,32:45:99:150,0,307
7    73096993    rs8891    T    C    160.91    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.759;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.05;QD=9.47;ReadPosRankSum=-0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539255    GT:AD:DP:GQ:PL    0/1:11,6:17:99:191,0,376
7    73097654    rs1128349    C    T    863.71    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DB;DP=76;Dels=0.0;FS=3.702;HRun=1;HaplotypeScore=0.9469;MQ=59.7;MQ0=0;MQRankSum=-1.337;QD=11.36;ReadPosRankSum=0.416;SNPEFF_AMINO_ACID_CHANGE=G31R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73097316_73097744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539255    GT:AD:DP:GQ:PL    0/1:44,32:76:99:894,0,1293
7    73097720    rs28494095    G    C    762.23    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=0.282;DB;DP=51;Dels=0.0;FS=1.448;HRun=2;HaplotypeScore=0.5784;MQ=59.09;MQ0=0;MQRankSum=-1.194;QD=14.95;ReadPosRankSum=1.427;SNPEFF_AMINO_ACID_CHANGE=L12V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73096601_73097783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395176    GT:AD:DP:GQ:PL    0/1:25,26:51:99:792,0,703
7    73112057    rs3830638    TG    T    717.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.6;DB;DP=28;FS=0.0;HRun=6;HaplotypeScore=85.355;IndelType=D;MQ=59.91;MQ0=0;MQRankSum=1.467;QD=25.64;ReadPosRankSum=-0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222812    GT:AD:DP:GQ:PL    1/1:3,25:28:38.70:760,39,0
7    73115201    rs41271241    G    A    340.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.103;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;MQRankSum=-0.205;QD=13.09;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=L247F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73115157_73115261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395155    GT:AD:DP:GQ:PL    0/1:13,13:26:99:370,0,415
7    73118033    rs35459363    G    A    523.37    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;MQRankSum=0.164;QD=15.86;ReadPosRankSum=0.492;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462135    GT:AD:DP:GQ:PL    0/1:14,19:33:99:553,0,376
7    73118398    rs7807316    T    C    166.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462135    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
7    73122923    rs2228607    A    G    130.81    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.365;QD=8.72;ReadPosRankSum=-0.386;SNPEFF_AMINO_ACID_CHANGE=D68;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73122919_73123018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222812    GT:AD:DP:GQ:PL    0/1:7,8:15:99:161,0,207
7    73122977    rs2229854    G    A    294.67    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.718;DB;DP=19;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=15.51;ReadPosRankSum=0.042;SNPEFF_AMINO_ACID_CHANGE=N50;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73122919_73123018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222812    GT:AD:DP:GQ:PL    0/1:7,12:19:99:325,0,223
7    73123473    rs72555385    A    G    245.42    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.541;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3346;MQ=60.0;MQ0=0;MQRankSum=-0.049;QD=8.76;ReadPosRankSum=0.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WBSCR22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423166    GT:AD:DP:GQ:PL    0/1:19,9:28:99:275,0,621
7    73123529    rs73362402    C    T    127.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=8.5;ReadPosRankSum=1.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WBSCR22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423166    GT:AD:DP:GQ:PL    0/1:10,5:15:99:158,0,228
7    73150694    rs1136954    A    C    86.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.96;MQ0=0;MQRankSum=0.731;QD=17.36;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABHD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395147    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:119,9,0
7    73151220    rs2293484    G    C    1223.16    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=91;Dels=0.0;FS=0.822;HRun=1;HaplotypeScore=1.6649;MQ=59.49;MQ0=0;MQRankSum=0.109;QD=13.44;ReadPosRankSum=0.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABHD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468331    GT:AD:DP:GQ:PL    0/1:50,41:91:99:1253,0,1308
7    73151644    rs6460052    A    G    518.20    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.423;DB;DP=46;Dels=0.0;FS=1.13;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.217;QD=11.27;ReadPosRankSum=-0.808;SNPEFF_AMINO_ACID_CHANGE=Y173;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73151551_73151721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABHD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437775    GT:AD:DP:GQ:PL    0/1:24,22:46:99:548,0,718
7    73243786    rs4717822    T    G    407.77    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=25;Dels=0.0;FS=1.58;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=16.31;ReadPosRankSum=0.958;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLDN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466411    GT:AD:DP:GQ:PL    0/1:11,14:25:99:438,0,368
7    73245519    rs8629    T    C    690.31    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.875;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.62;MQ0=0;MQRankSum=-1.59;QD=11.32;ReadPosRankSum=-1.027;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_73242930_73247013;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLDN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431918    GT:AD:DP:GQ:PL    0/1:33,28:61:99:720,0,907
7    73249165    rs13246460    T    A    342.78    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.825;DB;DP=46;Dels=0.0;FS=1.225;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.242;QD=7.45;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=R216W;SNPEFF_CODON_CHANGE=Agg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73248920_73249332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297873    GT:AD:DP:GQ:PL    0/1:30,16:46:99:373,0,1004
7    73249299    rs13232463    G    C    284.13    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=24;Dels=0.0;FS=4.693;HRun=1;HaplotypeScore=1.7675;MQ=59.03;MQ0=0;MQRankSum=0.985;QD=11.84;ReadPosRankSum=1.39;SNPEFF_AMINO_ACID_CHANGE=S171W;SNPEFF_CODON_CHANGE=tCg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73248920_73249332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297873    GT:AD:DP:GQ:PL    0/1:13,11:24:99:314,0,388
7    73254812    rs13241921    T    C    189.55    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-1.22;QD=12.64;ReadPosRankSum=1.555;SNPEFF_AMINO_ACID_CHANGE=Q107R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73254744_73254879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297873    GT:AD:DP:GQ:PL    0/1:7,8:15:99:220,0,232
7    73254910    rs13242043    T    A    127.34    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=18;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=3.1382;MQ=57.39;MQ0=0;MQRankSum=0.158;QD=7.07;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297873    GT:AD:DP:GQ:PL    0/1:8,10:18:99:157,0,238
7    73255647    rs4717823    G    C    58.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=14.66;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297873    GT:AD:DP:GQ:PL    0/1:1,3:4:29.73:89,0,30
7    73275501    rs11770024    T    C    196.10    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=24;Dels=0.0;FS=4.117;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.459;QD=8.17;ReadPosRankSum=-0.643;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426490    GT:AD:DP:GQ:PL    0/1:16,8:24:99:226,0,513
7    73275565    rs11770052    T    A    231.65    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=28;Dels=0.0;FS=1.702;HRun=1;HaplotypeScore=1.9662;MQ=59.17;MQ0=0;MQRankSum=-0.952;QD=8.27;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=I14N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73275489_73275596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320531    GT:AD:DP:GQ:PL    0/1:18,10:28:99:262,0,608
7    73279233    rs112641560    C    CAA    1725.89    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=151;FS=7.696;HRun=14;HaplotypeScore=1078.2983;IndelType=I;MQ=52.01;MQ0=0;MQRankSum=-2.732;QD=11.43;ReadPosRankSum=-3.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320531    GT:AD:DP:GQ:PL    0/1:106,29:151:99:1765,0,985
7    73279361    rs61742124    C    T    2973.16    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.623;DB;DP=207;DS;Dels=0.0;FS=0.557;HRun=1;HaplotypeScore=9.048;MQ=57.85;MQ0=0;MQRankSum=-1.347;QD=14.36;ReadPosRankSum=1.049;SNPEFF_AMINO_ACID_CHANGE=L37;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73279323_73279751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320531    GT:AD:DP:GQ:PL    0/1:102,105:207:99:3003,0,3041
7    73279482    rs13227841    T    C    1232.88    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.045;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8606;MQ=58.75;MQ0=0;MQRankSum=0.117;QD=13.4;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=W78R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73279323_73279751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320531    GT:AD:DP:GQ:PL    0/1:45,47:92:99:1263,0,1563
7    73280020    rs1136647    C    T    2115.31    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=4.059;DB;DP=148;Dels=0.0;FS=3.077;HRun=1;HaplotypeScore=1.6208;MQ=59.84;MQ0=0;MQRankSum=-0.046;QD=14.29;ReadPosRankSum=1.205;SNPEFF_AMINO_ACID_CHANGE=T205;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73279907_73280223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBSCR28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320531    GT:AD:DP:GQ:PL    0/1:78,70:148:99:2145,0,2356
7    73462497    .    T    G    32.25    QDFilter2    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.775;DP=30;Dels=0.0;FS=29.863;HRun=2;HaplotypeScore=0.0;MQ=53.52;MQ0=0;MQRankSum=-1.704;QD=1.07;ReadPosRankSum=-1.169;SNPEFF_AMINO_ACID_CHANGE=G120;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73462472_73462531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380553    GT:AD:DP:GQ:PL    0/1:16,13:30:62.24:62,0,547
7    73467650    rs66498390    CTGTG    C    191.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=74.5187;IndelType=D;MQ=53.15;MQ0=0;QD=19.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438880    GT:AD:DP:GQ:PL    1/1:4,6:10:15.05:233,15,0
7    73469169    rs2239691    C    T    304.20    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.439;DB;DP=26;Dels=0.0;FS=2.079;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.571;QD=11.7;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438880    GT:AD:DP:GQ:PL    0/1:15,11:26:99:334,0,446
7    73470714    rs2071307    G    A    488.80    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.581;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.46;MQ0=0;MQRankSum=-0.404;QD=11.37;ReadPosRankSum=1.036;SNPEFF_AMINO_ACID_CHANGE=G305S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73470601_73470765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380553    GT:AD:DP:GQ:PL    0/1:23,19:43:99:519,0,744
7    73470782    rs2856728    C    T    696.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=36.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438880    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:729,54,0
7    73472050    rs28763986    C    T    290.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.923;DB;DP=26;Dels=0.0;FS=4.925;HRun=1;HaplotypeScore=2.9766;MQ=55.4;MQ0=0;MQRankSum=1.436;QD=11.15;ReadPosRankSum=-0.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466878    GT:AD:DP:GQ:PL    0/1:13,13:26:99:320,0,316
7    73480258    rs45618836    A    G    188.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-1.13;QD=7.87;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252034    GT:AD:DP:GQ:PL    0/1:16,8:24:99:219,0,448
7    73513242    rs67040121    CA    C    57.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DB;DP=19;FS=0.0;HRun=18;HaplotypeScore=122.8797;IndelType=D;MQ=53.53;MQ0=0;MQRankSum=1.044;QD=3.03;ReadPosRankSum=1.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486361    GT:AD:DP:GQ:PL    1/1:5,12:19:5.99:98,6,0
7    73530046    rs149618    A    G    319    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483414    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:352,30,0
7    73731906    rs148561130    C    T    1232.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.055;QD=24.64;ReadPosRankSum=-1.055;SNPEFF_AMINO_ACID_CHANGE=P10;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73731810_73731997;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223398    GT:AD:DP:GQ:PL    1/1:2,48:50:62.67:1265,63,0
7    73814749    rs2522943    G    C    1467.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=26.68;SNPEFF_AMINO_ACID_CHANGE=R942P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_73814700_73814885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361545    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1501,126,0
7    74016623    rs80354921    A    G    299.12    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=18.69;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2IRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265755    GT:AD:DP:GQ:PL    0/1:5,11:16:99:329,0,162
7    74105219    rs72430574    ATGT    A    1476.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=140.7248;IndelType=D;MQ=48.8;MQ0=0;QD=44.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTF2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324896    GT:AD:DP:GQ:PL    1/1:2,31:32:93.32:1519,93,0
7    74167356    rs116428284    A    T    620.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.88;MQ0=0;QD=36.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTF2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438130    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:653,51,0
7    74167490    rs149241697    C    T    103.23    MQFilter40;QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.084;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.03;MQ0=16;MQRankSum=0.398;QD=1.56;ReadPosRankSum=0.022;SNPEFF_AMINO_ACID_CHANGE=D833;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_74167426_74167509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTF2I;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416070    GT:AD:DP:GQ:PL    0/1:51,15:66:99:133,0,605
7    74173182    rs2069301    T    A    347.82    MQFilter40    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.323;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=19.77;MQ0=19;MQRankSum=0.864;QD=4.04;ReadPosRankSum=1.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTF2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464471    GT:AD:DP:GQ:PL    0/1:55,29:85:99:378,0,685
7    74193668    rs17856077    G    A    738.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.18;MQ0=19;QD=14.76;SNPEFF_AMINO_ACID_CHANGE=G106S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_74193603_74193768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442021    GT:AD:DP:GQ:PL    1/1:0,50:50:72.09:771,72,0
7    74212311    rs187868539    G    T    510.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.88;MQ0=23;QD=8.1;SNPEFF_AMINO_ACID_CHANGE=H514N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_74210483_74212604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2IRD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405086    GT:AD:DP:GQ:PL    1/1:0,62:62:51.09:543,51,0
7    74251390    .    A    C    129.13    MQFilter40    AC=2;AF=1.00;AN=2;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.9;MQ0=41;QD=2.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2IRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361071    GT:AD:DP:GQ:PL    1/1:29,20:49:18.01:162,18,0
7    74306893    rs28463801    A    G    503.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.12;MQ0=2;QD=26.51;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340270    GT:AD:DP:GQ:PL    1/1:0,19:19:45.11:537,45,0
7    74335373    rs117816338    A    G    554.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.28;MQ0=0;QD=34.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380410    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:587,45,0
7    74335452    rs146189918    C    T    645.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.44;MQ0=2;QD=28.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380410    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:679,51,0
7    74524986    rs142604065    G    A    84.30    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.57;MQ0=2;MQRankSum=0.322;QD=8.43;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTF2IRD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312575    GT:AD:DP:GQ:PL    0/1:4,6:10:58.97:114,0,59
7    74604819    rs117397906    A    G    242.35    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.55;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTF2IRD2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412484    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
7    74867558    .    G    A    87.30    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.46;MQ0=1;QD=17.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426327    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:119,9,0
7    74914092    .    G    A    39.44    MQFilter40;QDFilter2    AB=0.98;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.83;MQ0=144;MQRankSum=0.573;QD=0.26;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329909    GT:AD:DP:GQ:PL    0/1:150,3:153:69.43:69,0,158
7    75028166    .    T    G    72.26    MQFilter40    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=2.426;DP=31;Dels=0.0;FS=22.005;HRun=2;HaplotypeScore=0.0;MQ=25.86;MQ0=9;MQRankSum=1.66;QD=2.33;ReadPosRankSum=-1.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402225    GT:AD:DP:GQ:PL    0/1:25,6:31:99:102,0,371
7    75044385    rs236649    C    T    1172.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.57;MQ0=3;QD=26.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257665    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1206,105,0
7    75051324    rs117499978    G    C    575.55    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.194;DB;DP=40;Dels=0.0;FS=4.492;HRun=0;HaplotypeScore=0.0;MQ=51.37;MQ0=0;MQRankSum=1.408;QD=14.39;ReadPosRankSum=0.677;SNPEFF_AMINO_ACID_CHANGE=A737;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75050792_75052486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453279    GT:AD:DP:GQ:PL    0/1:19,21:40:99:606,0,542
7    75051368    rs398003    T    C    505.53    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.661;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=43.83;MQ0=5;MQRankSum=1.123;QD=12.33;ReadPosRankSum=0.649;SNPEFF_AMINO_ACID_CHANGE=T723A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75050792_75052486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453279    GT:AD:DP:GQ:PL    0/1:20,21:41:99:536,0,479
7    75051375    rs398016    T    C    325.18    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.27;MQ0=5;MQRankSum=-0.415;QD=8.56;ReadPosRankSum=-0.68;SNPEFF_AMINO_ACID_CHANGE=P720;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75050792_75052486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453279    GT:AD:DP:GQ:PL    0/1:20,17:38:99:355,0,500
7    75052362    .    T    G    140.83    MQFilter40    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.25;DP=57;Dels=0.0;FS=4.752;HRun=5;HaplotypeScore=1.9598;MQ=19.15;MQ0=24;MQRankSum=-0.456;QD=2.47;ReadPosRankSum=1.608;SNPEFF_AMINO_ACID_CHANGE=K391N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75050792_75052486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453279    GT:AD:DP:GQ:PL    0/1:34,23:57:99:171,0,248
7    75053134    rs147256747    C    T    38.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.34;MQ0=0;MQRankSum=0.736;QD=12.78;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439629    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:68,0,31
7    75054156    rs142931484    T    C    87.31    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=49.61;MQ0=0;MQRankSum=0.741;QD=8.73;ReadPosRankSum=-1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439629    GT:AD:DP:GQ:PL    0/1:6,4:10:99:117,0,185
7    75070642    rs62476651    C    T    133.10    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.619;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.78;MQ0=1;MQRankSum=-3.096;QD=6.65;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257665    GT:AD:DP:GQ:PL    0/1:8,12:20:99:163,0,229
7    75104674    rs140314023    C    G    41    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.54;MQ0=0;MQRankSum=0.736;QD=13.67;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398379    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:71,0,24
7    75113387    .    G    GA    227.42    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DP=12;FS=0.0;HRun=10;HaplotypeScore=31.0131;IndelType=I;MQ=18.35;MQ0=2;MQRankSum=0.537;QD=9.89;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398379    GT:AD:DP:GQ:PL    0/1:9,13:12:13.37:266,0,13
7    75115201    rs186328613    C    A    39.04    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.55;MQ0=1;MQRankSum=-0.55;QD=4.34;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398379    GT:AD:DP:GQ:PL    0/1:4,5:9:69.03:69,0,92
7    75115226    rs55838432    G    A    94.83    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.77;MQ0=1;MQRankSum=0.322;QD=10.54;ReadPosRankSum=0.322;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POM121C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398379    GT:AD:DP:GQ:PL    0/1:4,5:9:54.37:125,0,54
7    75123214    rs3926479    T    C    117.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.05;MQ0=0;QD=29.49;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018720.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450699    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
7    75123237    rs62477719    G    A    38    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.24;MQ0=0;MQRankSum=-0.198;QD=5.43;ReadPosRankSum=-0.922;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018720.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450699    GT:AD:DP:GQ:PL    0/1:2,5:7:58.38:68,0,58
7    75123519    rs6947307    G    T    828.97    MQFilter40    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.249;DB;DP=60;Dels=0.0;FS=20.398;HRun=0;HaplotypeScore=0.0;MQ=34.21;MQ0=6;MQRankSum=1.286;QD=13.82;ReadPosRankSum=-0.486;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018720.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455862    GT:AD:DP:GQ:PL    0/1:21,39:60:99:859,0,371
7    75125833    .    A    G    151.22    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.684;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.81;MQ0=1;MQRankSum=-1.415;QD=8.4;ReadPosRankSum=0.927;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018720.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450699    GT:AD:DP:GQ:PL    0/1:10,8:18:99:181,0,269
7    75130916    .    C    A    3000.23    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.561;DP=250;DS;Dels=0.0;FS=4.546;HRun=0;HaplotypeScore=2.7623;MQ=46.12;MQ0=7;MQRankSum=-0.691;QD=12.0;ReadPosRankSum=-0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529061    GT:AD:DP:GQ:PL    0/1:126,124:250:99:3030,0,3168
7    75131185    rs58940651    C    G    1574.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.95;MQ0=1;QD=28.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529061    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1607,147,0
7    75131251    rs794362    G    A    647.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.72;MQ0=15;QD=15.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529061    GT:AD:DP:GQ:PL    1/1:12,30:42:63.14:681,63,0
7    75132375    rs185370748    G    A    46.03    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=16;Dels=0.0;FS=6.021;HRun=3;HaplotypeScore=0.0;MQ=33.98;MQ0=0;MQRankSum=0.91;QD=2.88;ReadPosRankSum=-1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018720.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455862    GT:AD:DP:GQ:PL    0/1:12,4:16:76.02:76,0,382
7    75132471    rs62477728    G    C    33.49    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=37.0;MQ0=0;MQRankSum=-0.736;QD=11.16;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC018720.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455862    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:63,0,31
7    75145266    rs5884966    TA    T    306.31    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=3.114;DB;DP=28;FS=18.257;HRun=2;HaplotypeScore=68.3407;IndelType=D;MQ=44.05;MQ0=0;MQRankSum=-1.505;QD=10.94;ReadPosRankSum=-0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438326    GT:AD:DP:GQ:PL    0/1:17,11:28:99:345,0,542
7    75145411    rs794378    T    C    839.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.54;MQ0=25;QD=11.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275580    GT:AD:DP:GQ:PL    1/1:7,65:72:84.05:873,84,0
7    75145495    rs75799888    G    A    383.78    MQFilter40    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.835;DB;DP=67;Dels=0.0;FS=4.454;HRun=0;HaplotypeScore=0.8667;MQ=28.27;MQ0=13;MQRankSum=-0.523;QD=5.73;ReadPosRankSum=-0.651;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275580    GT:AD:DP:GQ:PL    0/1:37,30:67:99:414,0,826
7    75168900    rs1167836    T    A    71.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.2;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336926    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,141
7    75171438    rs11773745    G    A    134.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=10.33;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336926    GT:AD:DP:GQ:PL    0/1:8,5:13:99:164,0,285
7    75176196    rs1167800    G    A    34.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.38;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336926    GT:AD:DP:GQ:PL    0/1:1,2:3:17.66:64,0,18
7    75176904    rs41281075    A    G    222.27    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=20.21;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336926    GT:AD:DP:GQ:PL    0/1:3,8:11:91.15:252,0,91
7    75177236    rs112143127    C    T    81.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.42;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336926    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:112,0,30
7    75183403    rs1167807    A    G    291.06    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;MQRankSum=-0.322;QD=22.39;ReadPosRankSum=0.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404944    GT:AD:DP:GQ:PL    0/1:2,11:13:48.44:321,0,48
7    75185985    rs794368    A    G    526.46    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.336;DB;DP=35;Dels=0.0;FS=11.968;HRun=0;HaplotypeScore=2.9328;MQ=58.67;MQ0=0;MQRankSum=0.855;QD=15.04;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404944    GT:AD:DP:GQ:PL    0/1:17,18:35:99:556,0,429
7    75186647    rs794366    C    A    100.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9612;MQ=56.04;MQ0=0;MQRankSum=-1.38;QD=16.69;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404944    GT:AD:DP:GQ:PL    0/1:2,4:6:64.41:130,0,64
7    75188991    rs34985543    C    T    95.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=19.02;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336926    GT:AD:DP:GQ:PL    0/1:1,4:5:27.21:125,0,27
7    75191602    rs794361    T    A    50.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=8.4;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336926    GT:AD:DP:GQ:PL    0/1:3,3:6:80.36:80,0,102
7    75228300    rs13227760    T    C    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336926    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    75398998    rs2302009    A    C    210.64    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.945;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.567;QD=10.03;ReadPosRankSum=0.794;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005180    GT:AD:DP:GQ:PL    0/1:10,11:21:99:241,0,323
7    75441108    rs11465315    C    T    743.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.53;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222902    GT:AD:DP:GQ:PL    1/1:0,25:27:60.16:776,60,0
7    75441111    rs11465314    G    T    694.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222902    GT:AD:DP:GQ:PL    1/1:2,25:27:57.18:728,57,0
7    75513062    rs42183    A    G    3210.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5156;MQ=59.06;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=T256A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75513020_75513166;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RHBDD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413229    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3244,262,0
7    75608986    rs10239977    C    T    103.22    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.47;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439297    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,146
7    75610763    rs2286819    G    A    154.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412521    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
7    75612770    rs13223707    C    G    847.48    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=67;Dels=0.0;FS=1.599;HRun=1;HaplotypeScore=3.0268;MQ=59.66;MQ0=0;MQRankSum=0.586;QD=12.65;ReadPosRankSum=-1.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412521    GT:AD:DP:GQ:PL    0/1:36,31:67:99:877,0,1217
7    75612783    rs13240147    G    A    1074.53    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=5.45;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2011;MQ=58.82;MQ0=0;MQRankSum=0.281;QD=13.6;ReadPosRankSum=-0.677;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412521    GT:AD:DP:GQ:PL    0/1:43,36:79:99:1105,0,1166
7    75613998    rs4732514    C    T    133.08    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.831;QD=11.09;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412521    GT:AD:DP:GQ:PL    0/1:7,5:12:99:163,0,254
7    75614029    rs4732515    T    C    280.55    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.0375;MQ=58.2;MQ0=0;MQRankSum=0.139;QD=10.79;ReadPosRankSum=0.915;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412521    GT:AD:DP:GQ:PL    0/1:15,11:26:99:311,0,498
7    75614082    rs4732516    C    G    636.52    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.008;DB;DP=66;Dels=0.0;FS=4.296;HRun=0;HaplotypeScore=1.9748;MQ=59.3;MQ0=0;MQRankSum=1.111;QD=9.64;ReadPosRankSum=2.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412521    GT:AD:DP:GQ:PL    0/1:42,24:66:99:667,0,1274
7    75614953    rs2228104    T    C    84.31    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=8.43;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A223;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75614897_75615167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439269    GT:AD:DP:GQ:PL    0/1:4,5:10:99:114,0,139
7    75615287    rs1057870    G    A    77.79    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=11.11;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S310;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75615241_75615386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439269    GT:AD:DP:GQ:PL    0/1:4,3:7:64.51:108,0,65
7    75616817    rs71741566    GGACA    G    821.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=126.6779;IndelType=D;MQ=56.88;MQ0=0;QD=41.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394893    GT:AD:DP:GQ:PL    1/1:3,17:20:51.17:864,51,0
7    75617945    rs11769713    T    G    146.96    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9789;MQ=54.04;MQ0=0;MQRankSum=-0.555;QD=11.3;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394893    GT:AD:DP:GQ:PL    0/1:7,6:13:99:177,0,237
7    75621661    rs2286826    G    C    396.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248600    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:429,36,0
7    75621827    rs4732519    A    G    126.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248600    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
7    75630274    rs8565    T    C    1540.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=Q152;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75630208_75630320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYXL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340062    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1574,123,0
7    75633209    rs2058389    T    C    373.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248600    GT:AD:DP:GQ:PL    1/1:0,13:13:36.07:407,36,0
7    75643313    rs7798794    C    T    375.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248600    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:408,33,0
7    75651085    rs6467975    T    C    1123.35    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=60;Dels=0.0;FS=2.932;HRun=0;HaplotypeScore=0.9967;MQ=59.38;MQ0=0;MQRankSum=1.394;QD=18.72;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248600    GT:AD:DP:GQ:PL    0/1:25,35:60:99:1153,0,790
7    75659815    rs1044483    T    C    220.74    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=24;Dels=0.0;FS=4.06;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.088;QD=9.2;ReadPosRankSum=-0.849;SNPEFF_AMINO_ACID_CHANGE=P9;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75659739_75659842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYXL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248600    GT:AD:DP:GQ:PL    0/1:14,10:24:99:251,0,480
7    75677430    rs10231092    C    G    32.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=6.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461263    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:64,6,0
7    75692927    rs1637037    C    T    396.64    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.984;DB;DP=31;Dels=0.0;FS=1.412;HRun=1;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-0.889;QD=12.79;ReadPosRankSum=-1.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315758    GT:AD:DP:GQ:PL    0/1:15,16:31:99:427,0,444
7    75693009    rs1637039    C    T    159.36    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=3.26;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.906;QD=8.85;ReadPosRankSum=-0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315758    GT:AD:DP:GQ:PL    0/1:11,7:18:99:189,0,311
7    75694079    rs11972240    T    G    90.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.45;MQ0=0;MQRankSum=0.103;QD=6.05;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315758    GT:AD:DP:GQ:PL    0/1:9,6:15:99:121,0,169
7    75694345    rs34267002    TC    T    294.88    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=3.148;DB;DP=27;FS=0.0;HRun=3;HaplotypeScore=70.9221;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=0.575;QD=10.92;ReadPosRankSum=-0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315758    GT:AD:DP:GQ:PL    0/1:16,11:27:99:334,0,530
7    75695908    rs3815457    A    G    77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=15.4;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424167    GT:AD:DP:GQ:PL    0/1:2,3:5:58.39:107,0,58
7    75747241    rs55812043    T    C    132.34    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.18;MQ0=0;MQRankSum=0.135;QD=10.18;ReadPosRankSum=-0.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC005077.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449786    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,247
7    75761541    rs11763339    T    C    140.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.56;ReadPosRankSum=-1.159;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC005077.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449786    GT:AD:DP:GQ:PL    0/1:4,5:9:99:170,0,136
7    75761547    rs11761172    C    T    69.92    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.99;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC005077.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449786    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,145
7    75889061    rs60576079    C    A    56.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=1.537;QD=9.43;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326382    GT:AD:DP:GQ:PL    0/1:3,3:6:86.60:87,0,110
7    75889184    rs6950229    T    C    64.09    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=5.34;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326382    GT:AD:DP:GQ:PL    0/1:8,4:12:94.08:94,0,242
7    75896535    rs6974346    C    T    38.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.38;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326382    GT:AD:DP:GQ:PL    0/1:3,3:6:68.29:68,0,111
7    75914934    rs75544239    G    GC    642.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=2;HaplotypeScore=57.1906;IndelType=I;MQ=59.92;MQ0=0;QD=37.78;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_75914933_75916603;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000326382    GT:AD:DP:GQ:PL    1/1:1,16:17:48.16:684,48,0
7    75959188    rs2072435    G    A    1081.93    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=4.827;DB;DP=87;Dels=0.0;FS=2.937;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.022;QD=12.44;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=S110;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_75958815_75959234;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453207    GT:AD:DP:GQ:PL    0/1:52,35:87:99:1112,0,1544
7    76029695    rs4728712    C    T    215.74    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.429;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=0.758;QD=9.81;ReadPosRankSum=2.077;SNPEFF_AMINO_ACID_CHANGE=R128H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76029603_76029908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRCRB4D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275560    GT:AD:DP:GQ:PL    0/1:12,10:22:99:246,0,266
7    76033906    rs11760779    T    C    365.81    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.171;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.637;QD=15.24;ReadPosRankSum=-0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRCRB4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275560    GT:AD:DP:GQ:PL    0/1:11,13:24:99:396,0,386
7    76033956    rs11760803    T    C    67.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.66;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRCRB4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275560    GT:AD:DP:GQ:PL    0/1:3,4:7:97.63:98,0,110
7    76058767    rs6465128    G    T    518.73    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=28;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=2.6722;MQ=58.33;MQ0=0;MQRankSum=1.846;QD=18.53;ReadPosRankSum=-1.366;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_76057955_76058950;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416245    GT:AD:DP:GQ:PL    0/1:10,18:28:99:549,0,283
7    76062619    rs3762030    C    G    33.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.39;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336517    GT:AD:DP:GQ:PL    0/1:2,2:4:63.55:64,0,72
7    76062623    rs28427180    C    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.32;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336517    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,70
7    76062644    rs6966715    C    G    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336517    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,146
7    76069453    rs1638132    T    C    41.28    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.1;MQ0=1;MQRankSum=-0.684;QD=4.59;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336517    GT:AD:DP:GQ:PL    0/1:5,4:9:71.27:71,0,172
7    76069811    rs2906999    T    C    1043.63    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=1.489;DB;DP=104;Dels=0.0;FS=11.833;HRun=1;HaplotypeScore=1.9717;MQ=40.37;MQ0=16;MQRankSum=-5.803;QD=10.03;ReadPosRankSum=-1.345;SNPEFF_AMINO_ACID_CHANGE=S139P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76069792_76069928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416245    GT:AD:DP:GQ:PL    0/1:42,62:104:99:1074,0,1207
7    76069902    rs1804905    G    C    66.19    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.62;DB;DP=91;Dels=0.0;FS=5.474;HRun=0;HaplotypeScore=2.4434;MQ=48.33;MQ0=5;MQRankSum=-0.57;QD=0.73;ReadPosRankSum=-1.472;SNPEFF_AMINO_ACID_CHANGE=R169T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76069792_76069928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416245    GT:AD:DP:GQ:PL    0/1:77,14:91:96.18:96,0,2404
7    76069937    rs2906996    C    T    108.09    QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=0.071;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=49.47;MQ0=2;MQRankSum=0.132;QD=1.64;ReadPosRankSum=3.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336517    GT:AD:DP:GQ:PL    0/1:56,10:66:99:138,0,1839
7    76111835    rs4236506    G    A    872.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.486;DB;DP=72;Dels=0.0;FS=10.626;HRun=0;HaplotypeScore=2.7478;MQ=54.71;MQ0=0;MQRankSum=-0.546;QD=12.12;ReadPosRankSum=0.822;SNPEFF_AMINO_ACID_CHANGE=R2;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76111825_76112464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446600    GT:AD:DP:GQ:PL    0/1:36,36:72:99:903,0,1052
7    76112060    rs1638074    C    T    201.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=20;Dels=0.0;FS=14.443;HRun=2;HaplotypeScore=0.0;MQ=57.25;MQ0=0;MQRankSum=0.491;QD=10.07;ReadPosRankSum=-1.398;SNPEFF_AMINO_ACID_CHANGE=F168;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76111825_76112464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307569    GT:AD:DP:GQ:PL    0/1:10,10:20:99:231,0,333
7    76112702    rs1799171    T    C    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423250    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
7    76126737    rs145964625    C    T    376.10    MQFilter40    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=116;Dels=0.0;FS=19.646;HRun=0;HaplotypeScore=0.9916;MQ=18.14;MQ0=34;MQRankSum=0.652;QD=3.24;ReadPosRankSum=-0.991;SNPEFF_AMINO_ACID_CHANGE=R274C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76126654_76126794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446600    GT:AD:DP:GQ:PL    0/1:72,43:116:99:406,0,611
7    76131453    rs2260214    T    C    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307569    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
7    76131586    rs2690683    G    A    244.66    MQFilter40    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=24;Dels=0.0;FS=7.384;HRun=1;HaplotypeScore=1.8455;MQ=38.52;MQ0=3;MQRankSum=-0.739;QD=10.19;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307569    GT:AD:DP:GQ:PL    0/1:11,13:24:99:275,0,310
7    76131597    rs185596389    A    G    73.18    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=23;Dels=0.0;FS=19.449;HRun=0;HaplotypeScore=0.6651;MQ=40.02;MQ0=1;MQRankSum=0.206;QD=3.18;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307569    GT:AD:DP:GQ:PL    0/1:16,6:23:99:103,0,519
7    76131645    rs6979487    A    G    578.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.48;MQ0=1;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=T330A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76131615_76131773;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446600    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:612,51,0
7    76131650    rs6958774    G    A    113.46    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.803;DB;DP=21;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.0;MQ=39.2;MQ0=2;MQRankSum=-0.465;QD=5.4;ReadPosRankSum=-0.549;SNPEFF_AMINO_ACID_CHANGE=A331;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76131615_76131773;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446600    GT:AD:DP:GQ:PL    0/1:14,7:21:99:143,0,342
7    76131695    rs4728775    A    G    758.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.83;MQ0=2;QD=30.35;SNPEFF_AMINO_ACID_CHANGE=L346;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76131615_76131773;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446600    GT:AD:DP:GQ:PL    1/1:0,25:25:60.17:792,60,0
7    76131812    rs6963784    C    G    60.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=10.16;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467729    GT:AD:DP:GQ:PL    0/1:3,3:6:90.93:91,0,101
7    76132898    rs17855260    T    C    116.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.54;MQ0=3;MQRankSum=-2.831;QD=5.3;ReadPosRankSum=0.549;SNPEFF_AMINO_ACID_CHANGE=G424;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76132743_76132904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446600    GT:AD:DP:GQ:PL    0/1:12,10:22:99:147,0,387
7    76132962    rs2690526    A    G    219.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.56;MQ0=2;QD=19.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005522.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467729    GT:AD:DP:GQ:PL    1/1:0,11:11:21.06:253,21,0
7    76140330    rs138522855    G    A    55.13    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.84;MQ0=2;MQRankSum=0.727;QD=9.19;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=A121T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76139842_76140369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257632    GT:AD:DP:GQ:PL    0/1:3,3:6:15.65:85,0,16
7    76142536    rs2286988    G    A    118.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.33;MQ0=0;MQRankSum=-1.226;QD=8.44;ReadPosRankSum=-1.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490360    GT:AD:DP:GQ:PL    0/1:8,6:14:99:148,0,200
7    76144455    rs1799125    A    C    307.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8308;MQ=58.66;MQ0=0;QD=21.98;SNPEFF_AMINO_ACID_CHANGE=R255S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76144362_76144773;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334348    GT:AD:DP:GQ:PL    1/1:0,14:14:30.05:341,30,0
7    76144483    rs1636632    A    G    62.52    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.684;QD=7.82;ReadPosRankSum=-0.684;SNPEFF_AMINO_ACID_CHANGE=K265E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76144362_76144773;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334348    GT:AD:DP:GQ:PL    0/1:5,3:8:92.51:93,0,172
7    76144560    rs1799126    T    C    102.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=25.72;SNPEFF_AMINO_ACID_CHANGE=W264R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76144362_76144773;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394849    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:135,12,0
7    76169862    .    C    T    38.76    MQFilter40    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.04;MQ0=3;MQRankSum=-1.036;QD=2.98;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:9,4:13:68.76:69,0,108
7    76170556    rs3902000    T    C    110.40    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.12;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.62;MQ0=4;MQRankSum=-4.004;QD=3.45;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:18,14:32:99:140,0,637
7    76170705    rs3901999    A    C    594.85    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.393;DB;DP=73;Dels=0.0;FS=7.906;HRun=0;HaplotypeScore=0.9867;MQ=41.81;MQ0=11;MQRankSum=-5.906;QD=8.15;ReadPosRankSum=1.885;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:30,42:73:99:625,0,926
7    76239480    .    C    A    213.12    MQFilter40    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DP=72;Dels=0.0;FS=4.084;HRun=0;HaplotypeScore=0.0;MQ=20.45;MQ0=35;MQRankSum=-0.982;QD=2.96;ReadPosRankSum=-0.792;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454397    GT:AD:DP:GQ:PL    0/1:50,22:72:99:243,0,346
7    76239503    .    G    GC    497.90    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=0.43;DP=36;FS=2.88;HRun=4;HaplotypeScore=103.791;IndelType=I;MQ=25.25;MQ0=25;MQRankSum=0.589;QD=7.01;ReadPosRankSum=-0.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454397    GT:AD:DP:GQ:PL    0/1:49,22:36:99:537,0,571
7    76239703    rs150952334    T    A    75.61    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.03;MQ0=0;MQRankSum=0.358;QD=15.12;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454397    GT:AD:DP:GQ:PL    0/1:2,3:5:66.19:106,0,66
7    76240677    rs1799211    T    G    115.83    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.35;MQ0=0;MQRankSum=-2.637;QD=10.53;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454397    GT:AD:DP:GQ:PL    0/1:6,5:11:99:146,0,219
7    76240785    rs71819724    CA    C    419.72    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=2.803;DB;DP=37;FS=14.622;HRun=1;HaplotypeScore=99.73;IndelType=D;MQ=49.54;MQ0=2;MQRankSum=-3.085;QD=10.76;ReadPosRankSum=-0.329;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_76240771_76240908;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000310842    GT:AD:DP:GQ:PL    0/1:23,16:37:99:459,0,993
7    76240888    rs1134609    A    G    221.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.248;DB;DP=73;Dels=0.0;FS=1.201;HRun=2;HaplotypeScore=2.6837;MQ=48.42;MQ0=10;MQRankSum=-5.299;QD=3.04;ReadPosRankSum=-2.28;SNPEFF_AMINO_ACID_CHANGE=L153P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76240771_76240908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310842    GT:AD:DP:GQ:PL    0/1:45,27:73:99:252,0,1394
7    76247805    rs1636620    A    G    37.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.44;MQ0=0;QD=18.54;SNPEFF_AMINO_ACID_CHANGE=C119R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76247500_76247932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
7    76254672    rs2480243    T    A    210.14    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=45.81;MQ0=1;MQRankSum=-1.999;QD=11.06;ReadPosRankSum=-1.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275569    GT:AD:DP:GQ:PL    0/1:8,11:19:99:240,0,273
7    76255019    rs56046726    T    C    1334.36    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.297;DB;DP=113;Dels=0.0;FS=2.02;HRun=0;HaplotypeScore=1.6545;MQ=48.55;MQ0=2;MQRankSum=-3.105;QD=11.81;ReadPosRankSum=0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275569    GT:AD:DP:GQ:PL    0/1:60,53:113:99:1364,0,1911
7    76255061    rs41278779    T    C    375.06    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.184;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9981;MQ=47.35;MQ0=3;MQRankSum=-3.062;QD=7.08;ReadPosRankSum=-0.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275569    GT:AD:DP:GQ:PL    0/1:32,21:53:99:405,0,1082
7    76255084    rs1754228    A    G    125.87    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.72;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=43.58;MQ0=3;MQRankSum=-4.028;QD=3.81;ReadPosRankSum=-1.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275569    GT:AD:DP:GQ:PL    0/1:21,12:33:99:156,0,766
7    76255440    rs62476698    G    A    839.41    MQFilter40    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.786;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=39.43;MQ0=2;MQRankSum=-3.62;QD=9.54;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:47,41:88:99:869,0,1241
7    76255452    rs62476699    G    A    768.83    MQFilter40    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.754;DB;DP=84;Dels=0.0;FS=0.9;HRun=0;HaplotypeScore=1.9399;MQ=38.32;MQ0=3;MQRankSum=-2.91;QD=9.15;ReadPosRankSum=0.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:47,37:84:99:799,0,1264
7    76255933    rs2006267    C    T    245.98    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.09;MQ0=0;MQRankSum=-0.15;QD=16.4;ReadPosRankSum=-0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275569    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,227
7    76256006    rs147578134    G    C    346.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.816;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.05;MQ0=1;MQRankSum=0.788;QD=10.82;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POMZP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275569    GT:AD:DP:GQ:PL    0/1:16,16:32:99:376,0,429
7    76280448    rs1292265    T    C    32.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.34;MQ0=0;MQRankSum=-0.736;QD=10.79;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:62,0,32
7    76326813    rs1345244    T    C    182.88    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.128;DB;DP=35;Dels=0.0;FS=3.794;HRun=0;HaplotypeScore=0.6651;MQ=45.06;MQ0=0;MQRankSum=-4.899;QD=5.23;ReadPosRankSum=-0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:21,14:35:99:213,0,618
7    76540381    rs115189112    A    C    1848.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.43;MQ0=1;MQRankSum=-0.638;QD=31.87;ReadPosRankSum=-1.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:1,57:58:99:1881,150,0
7    76540411    rs114268642    C    T    1759.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=39.11;MQ0=5;QD=26.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1793,147,0
7    76607938    rs56083327    C    T    615.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.66;MQ0=3;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:3,18:21:54.14:649,54,0
7    76608143    rs2245368    C    T    206.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.2;MQ0=0;QD=25.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:239,18,0
7    76609768    rs117113843    T    C    234.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.34;MQ0=1;QD=26.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:267,24,0
7    76609944    rs2430307    T    C    1802.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8268;MQ=53.68;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1836,144,0
7    76610095    rs62473742    C    T    811.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.64;MQ0=1;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:845,66,0
7    76610299    rs62473743    A    G    1282.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.91;MQ0=2;QD=26.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1316,105,0
7    76610407    rs62473744    A    G    1758.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=38.95;MQ0=4;QD=25.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,68:68:99:1792,153,0
7    76610621    rs6956966    T    C    30.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.34;MQ0=7;QD=2.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,11:11:6:61,6,0
7    76619625    .    C    T    205.01    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.62;DP=41;Dels=0.0;FS=19.651;HRun=0;HaplotypeScore=0.0;MQ=26.74;MQ0=8;MQRankSum=0.54;QD=5.0;ReadPosRankSum=-1.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:27,14:41:99:235,0,256
7    76619795    rs149365700    G    A    123.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.38;MQ0=1;QD=24.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
7    76624855    .    C    T    191.75    MQFilter40    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.619;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3391;MQ=13.66;MQ0=30;MQRankSum=0.439;QD=2.82;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:29,39:68:88.36:222,0,88
7    76624959    rs55895615    C    T    315.99    MQFilter40    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.65;DB;DP=91;Dels=0.0;FS=2.345;HRun=2;HaplotypeScore=3.969;MQ=27.84;MQ0=7;MQRankSum=-1.325;QD=3.47;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:67,24:91:99:346,0,1356
7    76629626    rs145082715    G    A    70.33    MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.238;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.22;MQ0=14;MQRankSum=0.951;QD=2.07;ReadPosRankSum=-1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:24,10:34:99:100,0,154
7    76631451    rs28660402    G    A    437.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7267;MQ=47.96;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:470,39,0
7    76631462    rs7802941    A    G    424.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.335;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4774;MQ=50.17;MQ0=0;MQRankSum=1.897;QD=23.59;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:2,16:18:17.44:457,17,0
7    76631674    rs7807098    T    C    215.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,11:11:21.04:249,21,0
7    76631727    rs7787384    G    A    81.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
7    76632736    rs3748126    C    G    740.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.8;MQ0=4;QD=28.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:4,22:26:60.17:773,60,0
7    76632916    rs2539661    T    C    65.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.83;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:97,9,0
7    76632936    rs10953101    C    T    37.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.69;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
7    76633640    rs79277119    C    A    282.22    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.156;DB;DP=36;Dels=0.0;FS=1.54;HRun=0;HaplotypeScore=0.0;MQ=20.51;MQ0=5;MQRankSum=-0.933;QD=7.84;ReadPosRankSum=1.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    0/1:18,18:36:99:312,0,244
7    76635140    rs62474190    G    A    35.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.67;MQ0=0;QD=11.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
7    76635200    rs78338653    A    G    48.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    76669085    .    T    A    76.67    MQFilter40    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.46;MQ0=6;MQRankSum=0.0;QD=5.11;ReadPosRankSum=0.361;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    0/1:11,4:15:99:107,0,133
7    76669106    .    A    G    67.64    MQFilter40    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.15;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.19;MQ0=6;MQRankSum=0.55;QD=2.71;ReadPosRankSum=0.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    0/1:21,4:25:97.64:98,0,231
7    76669152    .    A    C    637.06    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.65;MQ0=15;MQRankSum=3.158;QD=8.27;ReadPosRankSum=-1.048;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    0/1:53,24:77:99:667,0,556
7    76669157    .    T    C    640.05    MQFilter40    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=0.204;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.27;MQ0=19;MQRankSum=3.113;QD=7.71;ReadPosRankSum=-1.536;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    0/1:56,27:83:99:670,0,542
7    76669180    .    G    A    899.47    MQFilter40    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.956;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7719;MQ=22.45;MQ0=30;MQRankSum=2.664;QD=7.14;ReadPosRankSum=0.379;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    0/1:85,41:126:99:929,0,889
7    76669333    rs75766753    A    C    3361.60    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.684;DB;DP=250;DS;Dels=0.0;FS=2.331;HRun=1;HaplotypeScore=2.4432;MQ=48.94;MQ0=1;MQRankSum=-1.003;QD=13.45;ReadPosRankSum=-0.077;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    0/1:133,117:250:99:3362,0,4210
7    76680974    rs62474219    T    G    34.50    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.29;MQ0=0;MQRankSum=-0.796;QD=2.3;ReadPosRankSum=-0.429;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    0/1:10,5:15:64.49:64,0,194
7    76712997    rs111664871    C    G    77.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.9;MQ0=2;QD=12.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,6:6:9.02:109,9,0
7    76713493    rs6465420    T    C    154.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.98;MQ0=1;QD=19.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:1,7:8:18.02:188,18,0
7    76723490    rs62474239    C    T    251.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.73;MQ0=17;QD=9.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,26:26:27.05:285,27,0
7    76723557    rs62474240    A    G    269.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.28;MQ0=0;QD=33.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:302,24,0
7    76723573    rs2110325    C    T    208.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.72;MQ0=0;QD=34.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
7    76728220    rs117683126    T    C    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.55;MQ0=6;QD=12.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,11:11:15.04:167,15,0
7    76728248    rs75210105    C    T    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.51;MQ0=5;QD=13.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,9:10:15.04:167,15,0
7    76742649    rs142960161    A    G    559.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.59;MQ0=0;QD=34.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:592,45,0
7    76751068    rs71555938    G    C    428.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.18;MQ0=11;QD=13.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:4,28:32:42.09:462,42,0
7    76751252    rs3864642    C    G    514.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.03;MQ0=0;QD=34.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:548,42,0
7    76751543    rs4412304    G    A    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.19;MQ0=0;QD=18.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459742    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
7    76796958    rs28431858    T    G    72.88    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=39.41;MQ0=1;MQRankSum=-2.575;QD=2.28;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495584    GT:AD:DP:GQ:PL    0/1:24,8:32:99:103,0,728
7    76883717    rs2056709    C    A    134.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285871    GT:AD:DP:GQ:PL    1/1:0,4:5:12.04:167,12,0
7    76883989    rs3114319    C    T    254.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415750    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
7    76885769    rs3108428    A    G    1838.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133;DB;DP=52;Dels=0.0;FS=3.181;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.732;QD=35.35;ReadPosRankSum=1.466;SNPEFF_AMINO_ACID_CHANGE=Q209;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76885650_76885826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285871    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1871,102,0
7    76891835    rs1111665    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461882    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    76908199    rs3828947    A    C    108.98    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=9.08;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285871    GT:AD:DP:GQ:PL    0/1:7,5:12:99:139,0,182
7    76916010    rs6953266    T    C    872.14    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.553;DB;DP=55;Dels=0.0;FS=10.231;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.372;QD=15.86;ReadPosRankSum=-1.982;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285871    GT:AD:DP:GQ:PL    0/1:26,29:55:99:902,0,871
7    76916046    rs6949008    A    G    1130.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.438;DB;DP=78;Dels=0.0;FS=19.173;HRun=2;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.26;QD=14.5;ReadPosRankSum=1.499;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285871    GT:AD:DP:GQ:PL    0/1:39,39:78:99:1161,0,1156
7    76916462    rs6949841    A    C    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285871    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
7    76916819    rs3763402    G    A    808.56    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.842;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2859;MQ=60.0;MQ0=0;MQRankSum=-0.609;QD=10.64;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=Q494;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76916757_76916894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431197    GT:AD:DP:GQ:PL    0/1:37,39:76:99:839,0,1294
7    76922490    rs17151219    C    T    1024.65    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.283;DB;DP=78;Dels=0.0;FS=3.069;HRun=0;HaplotypeScore=1.7356;MQ=58.19;MQ0=0;MQRankSum=-1.458;QD=13.14;ReadPosRankSum=-0.165;SNPEFF_AMINO_ACID_CHANGE=H593;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_76922269_76922517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431197    GT:AD:DP:GQ:PL    0/1:42,36:78:99:1055,0,1198
7    76922547    rs17151224    A    G    809.77    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=2.338;DB;DP=57;Dels=0.0;FS=1.137;HRun=0;HaplotypeScore=0.0;MQ=54.48;MQ0=0;MQRankSum=-0.902;QD=14.21;ReadPosRankSum=-0.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474733    GT:AD:DP:GQ:PL    0/1:28,29:57:99:840,0,922
7    76922575    rs113826533    GCAA    G    601.18    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=5.089;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=328.0379;IndelType=D;MQ=51.96;MQ0=0;MQRankSum=-3.264;QD=15.03;ReadPosRankSum=1.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474733    GT:AD:DP:GQ:PL    0/1:25,15:40:99:640,0,1362
7    76922699    rs17151231    T    C    103.41    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.736;QD=17.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC007000.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474733    GT:AD:DP:GQ:PL    0/1:1,5:6:18.39:133,0,18
7    76949920    rs2293453    A    G    142.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=14.26;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426477    GT:AD:DP:GQ:PL    0/1:4,6:10:99:173,0,135
7    76950035    rs6950870    C    T    435    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.614;DB;DP=42;Dels=0.0;FS=2.755;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.564;QD=10.36;ReadPosRankSum=-1.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426477    GT:AD:DP:GQ:PL    0/1:25,17:42:99:465,0,707
7    76958730    rs10274222    A    G    171.01    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-3.014;QD=9.0;ReadPosRankSum=-1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334003    GT:AD:DP:GQ:PL    0/1:11,8:19:99:201,0,401
7    76980832    rs17806725    G    A    144.72    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.12;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434084    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:175,0,24
7    76982480    rs4729347    C    T    68.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.74;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257626    GT:AD:DP:GQ:PL    0/1:4,3:7:98.16:98,0,145
7    76984752    rs11422745    CA    C    331.38    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.148;DB;DP=72;FS=1.362;HRun=14;HaplotypeScore=456.4263;IndelType=D;MQ=58.52;MQ0=0;MQRankSum=1.722;QD=4.6;ReadPosRankSum=1.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257626    GT:AD:DP:GQ:PL    0/1:38,28:72:99:370,0,557
7    77006716    .    GCA    G    277.85    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=5.686;DP=89;FS=52.398;HRun=0;HaplotypeScore=568.9338;IndelType=D;MQ=43.22;MQ0=0;MQRankSum=-0.776;QD=3.09;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257626    GT:AD:DP:GQ:PL    0/1:72,8:89:99:317,0,1367
7    77006717    rs68033412    CAA    C    306.03    PASS    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=1.456;DB;DP=92;FS=0.0;HRun=22;HaplotypeScore=586.757;IndelType=D;MQ=42.84;MQ0=0;MQRankSum=0.438;QD=3.29;ReadPosRankSum=1.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257626    GT:AD:DP:GQ:PL    0/1:77,6:92:99:345,0,323
7    77035392    rs6949654    T    C    371.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_AMINO_ACID_CHANGE=H47R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77035346_77035422;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PION;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257626    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:405,30,0
7    77089322    rs17153719    G    A    878.38    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=59;Dels=0.0;FS=0.997;HRun=3;HaplotypeScore=2.7883;MQ=59.61;MQ0=0;MQRankSum=-0.388;QD=14.89;ReadPosRankSum=0.601;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GCNT1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449274    GT:AD:DP:GQ:PL    0/1:27,32:59:99:908,0,828
7    77247821    rs9640663    G    A    1787.08    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.643;DB;DP=127;Dels=0.0;FS=0.659;HRun=0;HaplotypeScore=0.0;MQ=59.85;MQ0=0;MQRankSum=-1.232;QD=14.07;ReadPosRankSum=-1.31;SNPEFF_AMINO_ACID_CHANGE=V192I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77247797_77247882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435495    GT:AD:DP:GQ:PL    0/1:62,65:127:99:1817,0,1842
7    77256713    rs3750050    A    G    1298.82    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=3.968;DB;DP=107;Dels=0.0;FS=0.791;HRun=0;HaplotypeScore=2.3298;MQ=59.35;MQ0=0;MQRankSum=-0.762;QD=12.14;ReadPosRankSum=-1.488;SNPEFF_AMINO_ACID_CHANGE=T443A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77256022_77256992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435495    GT:AD:DP:GQ:PL    0/1:61,46:107:99:1329,0,1881
7    77261820    rs12666778    T    G    444.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.604;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.187;QD=21.16;ReadPosRankSum=-0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248594    GT:AD:DP:GQ:PL    0/1:7,14:21:99:474,0,236
7    77365770    rs3764824    A    G    653.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.421;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.34;ReadPosRankSum=1.393;SNPEFF_AMINO_ACID_CHANGE=E210;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77365727_77365843;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSBN1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334955    GT:AD:DP:GQ:PL    0/1:20,20:40:99:683,0,693
7    77397906    rs10538970    ATAT    A    170.14    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=2.764;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=73.2178;IndelType=D;MQ=61.69;MQ0=0;MQRankSum=0.653;QD=8.95;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSBN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334955    GT:AD:DP:GQ:PL    0/1:13,6:19:99:209,0,655
7    77423574    rs7953    G    A    769.53    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.539;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.785;QD=16.03;ReadPosRankSum=-1.237;SNPEFF_AMINO_ACID_CHANGE=F39;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77423045_77423740;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM60;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257663    GT:AD:DP:GQ:PL    0/1:21,27:48:99:800,0,629
7    77523035    rs3779352    A    G    418.69    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=0.644;QD=11.96;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248550    GT:AD:DP:GQ:PL    0/1:18,17:35:99:449,0,574
7    77523521    rs10267180    A    G    177.44    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=13.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248550    GT:AD:DP:GQ:PL    0/1:5,8:13:99:207,0,173
7    77524689    rs17159264    A    C    73.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248550    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
7    77529884    rs848450    T    C    331.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248550    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:365,27,0
7    77531113    rs78163487    T    C    959.40    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DB;DP=84;Dels=0.0;FS=1.172;HRun=2;HaplotypeScore=4.8717;MQ=59.17;MQ0=0;MQRankSum=0.643;QD=11.42;ReadPosRankSum=0.829;SNPEFF_AMINO_ACID_CHANGE=P107;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77531079_77531237;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248550    GT:AD:DP:GQ:PL    0/1:47,37:84:99:989,0,1537
7    77539744    rs711309    G    A    1062.88    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=87;Dels=0.0;FS=2.12;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.3;QD=12.22;ReadPosRankSum=1.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248550    GT:AD:DP:GQ:PL    0/1:53,34:87:99:1093,0,1678
7    77549906    rs12234571    T    G    443.42    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.847;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=21.12;ReadPosRankSum=-1.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248550    GT:AD:DP:GQ:PL    0/1:8,13:21:99:473,0,246
7    77552127    rs848486    G    A    801.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=R346H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77551940_77552709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415251    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:834,60,0
7    77570196    rs11978636    C    A    57.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=6.42;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424760    GT:AD:DP:GQ:PL    0/1:6,3:9:87.81:88,0,215
7    77584159    rs72138270    A    AT    1084.88    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.378;DB;DP=78;FS=0.0;HRun=11;HaplotypeScore=243.3236;IndelType=I;MQ=60.69;MQ0=0;MQRankSum=0.306;QD=13.91;ReadPosRankSum=-2.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248550    GT:AD:DP:GQ:PL    0/1:32,46:78:99:1124,0,373
7    77756580    rs2074641    T    C    1565.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=57.97;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=L1105;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77756514_77756733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419488    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1599,120,0
7    77756724    rs7812015    C    T    900.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=S1057;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77756514_77756733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419488    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:933,69,0
7    77756815    rs9656109    G    T    382.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.2;MQ0=0;QD=29.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:416,33,0
7    77756849    rs2074642    C    T    297.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:330,24,0
7    77762013    rs2074646    C    T    330.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:363,27,0
7    77762457    rs2072155    T    C    1070.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=27.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:0,39:39:96.22:1103,96,0
7    77764591    rs767682    C    A    349.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:382,33,0
7    77789403    rs1009524    A    G    438.60    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=42;Dels=0.0;FS=1.321;HRun=0;HaplotypeScore=1.9443;MQ=59.45;MQ0=0;MQRankSum=1.742;QD=10.44;ReadPosRankSum=0.974;SNPEFF_AMINO_ACID_CHANGE=N914;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_77789342_77789590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419488    GT:AD:DP:GQ:PL    0/1:25,17:42:99:469,0,849
7    77807560    .    A    G    259.51    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=16.22;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    0/1:7,9:16:99:289,0,229
7    77815169    rs3823780    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    78119221    rs77689557    G    GA    1194.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.604;DB;DP=43;FS=0.0;HRun=9;HaplotypeScore=92.9739;IndelType=I;MQ=59.82;MQ0=0;MQRankSum=1.543;QD=27.78;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:4,39:43:71.21:1237,71,0
7    78256342    rs38116    C    T    980.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1013,75,0
7    78256643    rs38117    G    T    236.49    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.747;QD=29.56;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    0/1:1,7:8:15.93:266,0,16
7    78636202    rs4730601    T    C    204.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354212    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
7    79818716    rs6945280    A    G    41.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447650    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:71,0,28
7    79832906    rs12721455    C    G    138.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.244;QD=11.57;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351004    GT:AD:DP:GQ:PL    0/1:7,5:12:99:169,0,249
7    79840204    .    G    A    196.22    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.765;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.459;QD=8.18;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351004    GT:AD:DP:GQ:PL    0/1:16,8:24:99:226,0,563
7    79841954    rs10238438    A    G    197.33    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.873;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.386;QD=8.97;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351004    GT:AD:DP:GQ:PL    0/1:12,10:22:99:227,0,436
7    79842157    rs10241877    T    C    1636.96    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=121;Dels=0.0;FS=1.472;HRun=3;HaplotypeScore=2.2611;MQ=59.81;MQ0=0;MQRankSum=0.439;QD=13.53;ReadPosRankSum=-2.039;SNPEFF_AMINO_ACID_CHANGE=P230;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_79842032_79842185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457358    GT:AD:DP:GQ:PL    0/1:59,62:121:99:1667,0,1731
7    80108528    rs10280807    T    C    80.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.19;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435819    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:111,0,66
7    80118004    rs6467212    A    G    1054.48    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=78;Dels=0.0;FS=0.918;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.35;QD=13.52;ReadPosRankSum=-0.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435819    GT:AD:DP:GQ:PL    0/1:37,41:78:99:1084,0,1082
7    80123850    rs75962166    T    A    538.65    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.601;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9945;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=17.38;ReadPosRankSum=-2.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435819    GT:AD:DP:GQ:PL    0/1:15,16:31:99:569,0,525
7    80123999    rs6975345    T    C    885    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.178;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=59.98;MQ0=0;MQRankSum=1.209;QD=15.0;ReadPosRankSum=1.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435819    GT:AD:DP:GQ:PL    0/1:26,33:59:99:915,0,683
7    80124051    rs35654976    A    AT    272.47    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=25;FS=0.0;HRun=8;HaplotypeScore=102.3395;IndelType=I;MQ=59.95;MQ0=0;MQRankSum=-1.373;QD=10.9;ReadPosRankSum=0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435819    GT:AD:DP:GQ:PL    0/1:14,11:25:99:311,0,212
7    80141069    rs10230573    A    G    2835.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.87;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435819    GT:AD:DP:GQ:PL    1/1:1,81:82:99:2868,211,0
7    80141418    rs7801018    A    G    109.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.69;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435819    GT:AD:DP:GQ:PL    0/1:3,4:7:95.71:140,0,96
7    80276331    rs1527463    C    T    340.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526804    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:373,27,0
7    80290369    rs3211892    A    G    2261.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428497    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2295,169,0
7    80303460    rs56293647    ATAAG    A    331.01    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=3.242;DB;DP=27;FS=2.046;HRun=0;HaplotypeScore=121.2897;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=0.171;QD=12.26;ReadPosRankSum=0.239;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_80303299_80303725;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD36;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000309881    GT:AD:DP:GQ:PL    0/1:20,7:27:99:370,0,1035
7    80374342    rs1949971    A    G    3316.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_AMINO_ACID_CHANGE=Y708;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_80371854_80374623;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265361    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3316,244,0
7    80374438    rs1949972    T    C    2015.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=P676;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_80371854_80374623;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265361    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2048,165,0
7    80378148    rs1405743    T    C    1804.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265361    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1838,138,0
7    80378175    rs2886793    T    C    2242.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265361    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2276,172,0
7    80378319    rs2272351    G    C    1893.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_AMINO_ACID_CHANGE=V579;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_80378214_80378344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265361    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1926,147,0
7    80456841    rs4461841    C    T    1246.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=48.31;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265361    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1280,105,0
7    80817269    rs327695    T    C    1084.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005008.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431501    GT:AD:DP:GQ:PL    1/1:0,36:37:81.27:1117,81,0
7    81346685    rs1800793    T    C    1665.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.64;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222390    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1699,132,0
7    81350208    rs12536657    A    G    677.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222390    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:711,54,0
7    81350223    rs10272030    G    A    495.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222390    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:529,39,0
7    81355066    rs2887069    G    A    999.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222390    GT:AD:DP:GQ:PL    1/1:0,26:26:78.22:1032,78,0
7    81359116    rs5745686    CA    C    1171.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=9;HaplotypeScore=136.6232;IndelType=D;MQ=60.67;MQ0=0;QD=24.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222390    GT:AD:DP:GQ:PL    1/1:3,44:48:99:1214,134,0
7    81365828    rs10954658    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222390    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    81372047    rs5745678    A    G    467.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394769    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:501,39,0
7    81372156    rs5745676    A    G    1480.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=38.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394769    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1514,114,0
7    81372452    rs2214826    A    G    255.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222390    GT:AD:DP:GQ:PL    1/1:0,8:8:24.03:288,24,0
7    81374500    rs4732406    G    C    855.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2013;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222390    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:889,63,0
7    81381326    rs5745646    C    T    627.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354224    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:660,48,0
7    81381731    rs979692    T    C    185.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354224    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:218,18,0
7    81579832    .    T    TA    319.59    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.43;DP=34;FS=0.0;HRun=10;HaplotypeScore=111.5778;IndelType=I;MQ=57.94;MQ0=0;MQRankSum=0.727;QD=9.4;ReadPosRankSum=2.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284088    GT:AD:DP:GQ:PL    0/1:19,14:34:99:359,0,285
7    81588636    rs1229502    G    A    678.59    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.459;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.498;QD=13.57;ReadPosRankSum=-0.577;SNPEFF_AMINO_ACID_CHANGE=P1038;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_81588591_81588673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356860    GT:AD:DP:GQ:PL    0/1:22,28:50:99:709,0,614
7    81591027    rs11979649    T    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469297    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
7    81591716    rs1229503    T    G    201.07    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.286;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=2.245;QD=10.58;ReadPosRankSum=-0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486539    GT:AD:DP:GQ:PL    0/1:10,9:19:99:231,0,321
7    81593769    rs17240359    A    G    69.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.93;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486539    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,145
7    81596813    rs17240387    T    C    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284088    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:71,0,70
7    81598483    rs4321937    T    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284088    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
7    81600197    rs37067    A    G    466.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284088    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:499,39,0
7    81601231    rs1229505    C    G    1219.02    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.123;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.63;MQ0=0;MQRankSum=-0.786;QD=19.35;ReadPosRankSum=-0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284088    GT:AD:DP:GQ:PL    0/1:22,41:63:99:1249,0,687
7    81603945    rs66590028    AT    A    74.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=12;HaplotypeScore=22.8859;IndelType=D;MQ=47.12;MQ0=0;QD=12.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284088    GT:AD:DP:GQ:PL    1/1:1,5:6:14.93:116,15,0
7    82430654    rs12667348    A    G    166.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432078    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
7    82438917    rs113127326    G    GTAATAATAA    797.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=92.8593;IndelType=I;MQ=48.82;MQ0=0;QD=49.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    1/1:9,7:16:21.07:839,21,0
7    82450364    rs2522832    A    G    1363.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426442    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1396,111,0
7    82453708    rs2522833    A    C    2098.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.24;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=S301A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_82453552_82453732;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380195    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2131,156,0
7    82455895    rs2715150    A    G    2004.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2038,162,0
7    82457494    rs2371215    T    A    32.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
7    82475786    rs67293081    TTA    T    463.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=37.902;IndelType=D;MQ=55.66;MQ0=0;QD=42.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:505,33,0
7    82508938    rs2371366    T    C    118.32    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=9.1;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    0/1:6,7:13:99:148,0,212
7    82531887    rs150270529    TATA    T    474.87    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=89.8147;IndelType=D;MQ=52.4;MQ0=0;MQRankSum=-0.591;QD=24.99;ReadPosRankSum=-1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    0/1:7,12:19:99:514,0,268
7    82531933    .    CA    C    215.30    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.819;DP=35;FS=0.0;HRun=8;HaplotypeScore=168.8546;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=1.156;QD=6.15;ReadPosRankSum=-0.994;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    0/1:27,8:35:99:254,0,589
7    82544987    rs17156844    A    G    1378.23    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=77;Dels=0.0;FS=3.507;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.489;QD=17.9;ReadPosRankSum=-1.678;SNPEFF_AMINO_ACID_CHANGE=H4105;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_82544002_82546189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    0/1:33,44:77:99:1408,0,982
7    82546282    rs12707531    C    A    327.44    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.144;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=17.23;ReadPosRankSum=-0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    0/1:9,10:19:99:357,0,324
7    82581488    rs10630259    T    TTCA    9340.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=163;FS=0.0;HRun=0;HaplotypeScore=461.9969;IndelType=I;MQ=56.3;MQ0=0;QD=57.3;SNPEFF_AMINO_ACID_CHANGE=E2858VK;SNPEFF_CODON_CHANGE=gaa/gTGAaa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_7_82581172_82586251;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431819    GT:AD:DP:GQ:PL    1/1:18,140:163:99:9340,439,0
7    82581859    rs976714    C    T    3761.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=35.49;SNPEFF_AMINO_ACID_CHANGE=A2735T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_82581172_82586251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431819    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3762,280,0
7    82582846    rs10954696    C    T    4564.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=V2406I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_82581172_82586251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431819    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4564,334,0
7    82595885    rs62458570    G    A    470.45    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.322;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=18.09;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    0/1:11,15:26:99:500,0,383
7    82764425    rs2877    C    G    2578.54    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.497;DB;DP=188;Dels=0.0;FS=6.217;HRun=3;HaplotypeScore=3.4959;MQ=59.29;MQ0=0;MQRankSum=0.53;QD=13.72;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=S760T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_82763566_82764972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431819    GT:AD:DP:GQ:PL    0/1:100,88:188:99:2609,0,3162
7    82784017    rs6951239    G    T    1615.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1648,123,0
7    82784456    rs6972461    A    G    1435.96    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.44;DB;DP=113;Dels=0.0;FS=0.8;HRun=1;HaplotypeScore=6.0261;MQ=57.08;MQ0=0;MQRankSum=-0.302;QD=12.71;ReadPosRankSum=-1.693;SNPEFF_AMINO_ACID_CHANGE=S447P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_82784064_82784467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431819    GT:AD:DP:GQ:PL    0/1:44,67:113:99:1466,0,1263
7    82784832    rs77721383    C    G    631.31    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.269;DB;DP=39;Dels=0.0;FS=3.971;HRun=0;HaplotypeScore=1.832;MQ=54.09;MQ0=0;MQRankSum=-1.822;QD=16.19;ReadPosRankSum=-1.433;SNPEFF_AMINO_ACID_CHANGE=Q375H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_82784064_82785708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCLO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333891    GT:AD:DP:GQ:PL    0/1:16,23:39:99:661,0,469
7    83016538    rs78858559    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    83021799    rs67348120    TAAA    T    273.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.116;DB;DP=18;FS=0.0;HRun=18;HaplotypeScore=117.4439;IndelType=D;MQ=55.31;MQ0=0;MQRankSum=-0.116;QD=15.19;ReadPosRankSum=1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    1/1:3,7:18:39.78:316,40,0
7    83023587    rs10647471    TAC    T    1248.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=140.8298;IndelType=D;MQ=62.08;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    1/1:6,35:41:99:1291,105,0
7    83026100    rs66795722    C    CAA    491.83    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=21;FS=0.0;HRun=7;HaplotypeScore=74.5832;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=-0.887;QD=23.42;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    0/1:9,12:21:99:531,0,220
7    83029280    rs2255906    T    G    502.78    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.034;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.146;QD=10.93;ReadPosRankSum=0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    0/1:28,18:46:99:533,0,972
7    83029639    rs2255820    A    C    345.28    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.253;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.479;QD=19.18;ReadPosRankSum=-1.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    0/1:5,13:18:99:375,0,158
7    83031907    rs2709930    T    C    764.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.43;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:798,60,0
7    83032187    rs2722976    T    C    81.54    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.219;QD=9.06;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    0/1:5,4:9:99:112,0,174
7    83095955    rs7806439    A    G    623.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=29.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    1/1:0,21:21:48.13:657,48,0
7    83098714    rs10650403    C    CTTTT    604.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=14;HaplotypeScore=144.711;IndelType=I;MQ=47.5;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307792    GT:AD:DP:GQ:PL    1/1:5,8:17:38.27:646,38,0
7    83590852    rs797821    T    C    770.82    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.325;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.615;QD=14.27;ReadPosRankSum=-1.007;SNPEFF_AMINO_ACID_CHANGE=T717;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_83587659_83591142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265362    GT:AD:DP:GQ:PL    0/1:26,28:54:99:801,0,827
7    83606353    rs79919970    T    TGA    695.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=29.9122;IndelType=I;MQ=60.77;MQ0=0;QD=49.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265362    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:738,42,0
7    83606518    rs701320    G    A    1201.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265362    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1235,93,0
7    83614620    rs17246251    T    G    174.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=17.48;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265362    GT:AD:DP:GQ:PL    0/1:4,6:10:99:205,0,128
7    83614801    rs141423527    AG    A    1232.95    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=6.043;DB;DP=60;FS=2.356;HRun=2;HaplotypeScore=146.9109;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=1.334;QD=20.55;ReadPosRankSum=1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265362    GT:AD:DP:GQ:PL    0/1:25,35:60:99:1272,0,953
7    83739762    rs1990044    T    C    493.10    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=1.385;DB;DP=50;Dels=0.0;FS=1.145;HRun=0;HaplotypeScore=0.734;MQ=59.54;MQ0=0;MQRankSum=0.728;QD=9.86;ReadPosRankSum=-0.728;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420047    GT:AD:DP:GQ:PL    0/1:30,19:50:99:523,0,898
7    83740015    rs1990045    T    C    173.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.9299;MQ=56.04;MQ0=0;MQRankSum=1.555;QD=9.64;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265362    GT:AD:DP:GQ:PL    0/1:10,8:18:99:203,0,242
7    83764309    rs17241389    C    G    340.26    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.144;DB;DP=24;Dels=0.0;FS=1.875;HRun=1;HaplotypeScore=1.5518;MQ=60.0;MQ0=0;MQRankSum=1.217;QD=14.18;ReadPosRankSum=-1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265362    GT:AD:DP:GQ:PL    0/1:11,13:24:99:370,0,379
7    83823737    rs67227861    AG    A    202.13    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.252;DB;DP=28;FS=0.0;HRun=9;HaplotypeScore=72.9942;IndelType=D;MQ=60.77;MQ0=0;MQRankSum=0.58;QD=7.22;ReadPosRankSum=-0.952;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424555    GT:AD:DP:GQ:PL    0/1:16,12:28:99:241,0,469
7    84635971    rs143605383    A    G    365.21    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=1.09;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.156;QD=26.09;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284136    GT:AD:DP:GQ:PL    0/1:3,11:14:78.38:395,0,78
7    84644346    rs6468008    C    G    335    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.175;DB;DP=37;Dels=0.0;FS=11.84;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.734;QD=9.05;ReadPosRankSum=0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284136    GT:AD:DP:GQ:PL    0/1:24,13:37:99:365,0,786
7    84647477    rs7780132    C    T    103.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.88;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284136    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,147
7    84751259    .    TA    T    113.42    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.381;DP=25;FS=0.0;HRun=13;HaplotypeScore=94.3955;IndelType=D;MQ=57.17;MQ0=0;MQRankSum=-0.34;QD=4.54;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444867    GT:AD:DP:GQ:PL    0/1:15,10:25:99:152,0,232
7    86794121    rs2074757    G    A    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331242    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
7    86795947    rs10538610    TAG    T    2601.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=0;HaplotypeScore=225.8696;IndelType=D;MQ=59.54;MQ0=0;QD=41.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414630    GT:AD:DP:GQ:PL    1/1:1,62:62:99:2643,181,0
7    86800351    rs3747807    A    G    649.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.97;MQ0=0;QD=28.22;SNPEFF_AMINO_ACID_CHANGE=A3;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_86800311_86800373;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMTF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420131    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:682,54,0
7    86820459    rs1558050    G    A    231.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331242    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:265,21,0
7    86825793    rs117333549    T    C    67.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=16.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423734    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:99,9,0
7    86827032    rs71743752    TA    T    207.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=165.3605;IndelType=D;MQ=52.9;MQ0=0;QD=11.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465976    GT:AD:DP:GQ:PL    1/1:7,9:18:24.06:249,24,0
7    86978347    rs802037    C    A    2809.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.73;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331536    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2843,214,0
7    86983715    rs7808249    A    G    424.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331536    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:458,33,0
7    86998842    rs6966140    G    A    1690.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331536    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1724,129,0
7    87005287    rs68154742    C    CT    2101.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.983;DB;DP=91;FS=0.0;HRun=11;HaplotypeScore=304.0302;IndelType=I;MQ=58.65;MQ0=0;MQRankSum=1.592;QD=22.85;ReadPosRankSum=-0.562;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469785    GT:AD:DP:GQ:PL    1/1:18,74:91:99:2144,199,0
7    87006567    rs802042    G    C    205.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469785    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
7    87011349    rs31630    G    A    1419.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331536    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1452,105,0
7    87022024    rs31644    G    C    2031.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CROT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331536    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2064,150,0
7    87031809    rs1526090    A    G    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467079    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    87032613    rs31653    A    G    3338.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.54;MQ0=0;QD=33.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467079    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3339,247,0
7    87049112    rs72016769    AC    A    239.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=30.5882;IndelType=D;MQ=66.43;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469770    GT:AD:DP:GQ:PL    1/1:1,7:8:23.91:281,24,0
7    87053150    rs31667    A    G    1167.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265723    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1200,99,0
7    87053206    rs31668    G    A    2695.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265723    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2729,202,0
7    87056260    rs10647775    A    AGTGT    589.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.24;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=137.1344;IndelType=I;MQ=53.87;MQ0=0;MQRankSum=0.248;QD=29.47;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265723    GT:AD:DP:GQ:PL    1/1:7,6:20:13.31:631,13,0
7    87069758    rs31675    T    C    826.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265723    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:859,66,0
7    87069880    rs31676    T    C    131.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265723    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
7    87082292    rs1202283    G    A    1885.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=35.58;SNPEFF_AMINO_ACID_CHANGE=N168;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_87082260_87082451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265723    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1919,144,0
7    87168749    rs4728699    C    T    376.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265724    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
7    87170807    rs2235063    T    C    716.94    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=3.548;DB;DP=66;Dels=0.0;FS=2.471;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.746;QD=10.86;ReadPosRankSum=1.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482527    GT:AD:DP:GQ:PL    0/1:38,28:66:99:747,0,1212
7    87195962    rs1202168    G    A    86.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265724    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
7    87215114    rs1211152    A    C    109.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265724    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
7    87229501    rs2214102    T    C    629.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=29.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476862    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:663,51,0
7    87737592    rs34957515    A    G    570.87    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=33;Dels=0.0;FS=2.032;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.393;QD=17.3;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265727    GT:AD:DP:GQ:PL    0/1:12,21:33:99:601,0,411
7    87745903    rs2301998    A    T    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412441    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    87754915    rs17255978    G    A    794.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=45;Dels=0.0;FS=1.413;HRun=2;HaplotypeScore=1.7987;MQ=58.97;MQ0=0;MQRankSum=0.542;QD=17.64;ReadPosRankSum=-1.312;SNPEFF_AMINO_ACID_CHANGE=V174I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_87754904_87754974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398203    GT:AD:DP:GQ:PL    0/1:15,30:45:99:824,0,436
7    87759483    rs10952914    T    C    83.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265727    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
7    87759588    .    A    AT    109.78    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DP=13;FS=0.0;HRun=14;HaplotypeScore=35.7495;IndelType=I;MQ=60.83;MQ0=0;MQRankSum=0.244;QD=8.44;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265727    GT:AD:DP:GQ:PL    0/1:6,7:13:60.35:149,0,60
7    87762120    .    T    C    352.02    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.912;QD=14.08;ReadPosRankSum=0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439864    GT:AD:DP:GQ:PL    0/1:14,11:25:99:382,0,442
7    87774924    rs2888581    A    G    193.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=21.49;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265727    GT:AD:DP:GQ:PL    0/1:3,6:9:97.32:223,0,97
7    87794938    rs13243228    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265727    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
7    87797264    rs4236505    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265727    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    87825689    rs78031419    A    G    131.75    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.092;QD=10.13;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265727    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,281
7    87839690    rs17150369    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488015    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    87840158    rs57591302    G    GA    557.94    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.875;DB;DP=42;FS=1.559;HRun=6;HaplotypeScore=83.7501;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=2.221;QD=13.28;ReadPosRankSum=0.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265729    GT:AD:DP:GQ:PL    0/1:23,19:42:99:597,0,522
7    87911901    rs77925192    G    A    317.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.388;DB;DP=18;Dels=0.0;FS=2.762;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.826;QD=17.64;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301959    GT:AD:DP:GQ:PL    0/1:6,12:18:99:347,0,205
7    87912580    rs41278773    G    A    268.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=1.599;QD=22.39;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301959    GT:AD:DP:GQ:PL    0/1:4,8:12:99:299,0,125
7    87913221    rs34741656    C    T    1501.83    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.996;DB;DP=105;Dels=0.0;FS=1.619;HRun=0;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=0.644;QD=14.17;ReadPosRankSum=-0.618;SNPEFF_AMINO_ACID_CHANGE=A122T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_87913129_87913586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301959    GT:AD:DP:GQ:PL    0/1:52,53:105:99:1532,0,1626
7    87913361    rs1981529    C    T    2430.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=35.74;SNPEFF_AMINO_ACID_CHANGE=G75D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_87913129_87913586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301959    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2463,184,0
7    88424365    rs71949611    CAA    C    148.91    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=13;FS=0.0;HRun=11;HaplotypeScore=75.1261;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=-0.38;QD=11.45;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297203    GT:AD:DP:GQ:PL    0/1:5,7:13:99:188,0,149
7    88847450    rs61447968    TA    T    443.47    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=4.758;DB;DP=32;FS=4.959;HRun=1;HaplotypeScore=141.6867;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=-0.189;QD=13.86;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333190    GT:AD:DP:GQ:PL    0/1:17,15:32:99:482,0,719
7    88964000    rs801839    C    T    658.55    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.745;DB;DP=43;Dels=0.0;FS=2.819;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=15.32;ReadPosRankSum=-1.637;SNPEFF_AMINO_ACID_CHANGE=F568;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_88962677_88966346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333190    GT:AD:DP:GQ:PL    0/1:18,25:43:99:689,0,638
7    88964196    rs74687205    T    A    585.22    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=42;Dels=0.0;FS=6.658;HRun=0;HaplotypeScore=1.612;MQ=60.0;MQ0=0;MQRankSum=0.013;QD=13.93;ReadPosRankSum=-0.038;SNPEFF_AMINO_ACID_CHANGE=F634I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_88962677_88966346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333190    GT:AD:DP:GQ:PL    0/1:22,20:42:99:615,0,690
7    88964226    rs79931924    C    A    436.87    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=46;Dels=0.0;FS=2.724;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.465;QD=9.5;ReadPosRankSum=0.196;SNPEFF_AMINO_ACID_CHANGE=P644T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_88962677_88966346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333190    GT:AD:DP:GQ:PL    0/1:30,16:46:99:467,0,969
7    88964227    rs76870774    C    G    453.50    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.596;DB;DP=46;Dels=0.0;FS=1.256;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.083;QD=9.86;ReadPosRankSum=0.249;SNPEFF_AMINO_ACID_CHANGE=P644R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_88962677_88966346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333190    GT:AD:DP:GQ:PL    0/1:29,17:46:99:483,0,926
7    88965141    rs6962993    A    G    2511.47    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=167;Dels=0.0;FS=8.199;HRun=0;HaplotypeScore=4.6657;MQ=59.59;MQ0=0;MQRankSum=0.414;QD=15.04;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=N949D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_88962677_88966346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333190    GT:AD:DP:GQ:PL    0/1:79,88:167:99:2541,0,2538
7    88965609    rs6963781    A    G    525.15    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.386;DB;DP=41;Dels=0.0;FS=1.36;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.548;QD=12.81;ReadPosRankSum=-0.576;SNPEFF_AMINO_ACID_CHANGE=M1105V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_88962677_88966346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF804B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333190    GT:AD:DP:GQ:PL    0/1:20,21:41:99:555,0,683
7    89854446    rs194520    T    G    1616.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.56;MQ0=0;QD=30.5;SNPEFF_AMINO_ACID_CHANGE=F17C;SNPEFF_CODON_CHANGE=tTt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89854364_89854888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287908    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1650,129,0
7    89856608    rs110360    C    T    2067.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_AMINO_ACID_CHANGE=L272;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89856285_89856812;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287908    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2101,156,0
7    89861832    rs194524    G    A    1807.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=59.66;MQ0=0;QD=32.87;SNPEFF_AMINO_ACID_CHANGE=R456Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89861651_89866945;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287908    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1841,138,0
7    89861890    rs194525    G    T    1151.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=M475I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89861651_89866945;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287908    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1185,90,0
7    89861942    rs194526    C    T    514.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394621    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:548,42,0
7    89867446    rs35403811    T    TCTG    4085.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.0;HRun=0;HaplotypeScore=302.7118;IndelType=I;MQ=59.76;MQ0=0;QD=44.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STEAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287908    GT:AD:DP:GQ:PL    1/1:22,66:91:99:4085,199,0
7    89887587    rs11771963    G    T    198.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:232,18,0
7    89891518    rs6974809    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
7    89901039    rs10280053    A    C    2317.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.7;MQ0=0;MQRankSum=-1.567;QD=36.79;ReadPosRankSum=-1.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:1,62:63:99:2351,144,0
7    89908833    rs3810890    G    T    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
7    89908851    rs3810891    A    G    30.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
7    89909442    rs10262603    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    89912301    rs1029365    G    A    1379.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=V373M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89912206_89912370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457170    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1413,105,0
7    89912513    rs2027965    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    89927191    rs6465256    T    A    2089.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8653;MQ=59.66;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:0,67:68:99:2123,160,0
7    89929110    rs36006782    C    CT    213.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=10;HaplotypeScore=19.9885;IndelType=I;MQ=61.34;MQ0=0;QD=26.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316089    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:256,24,0
7    89933874    rs9655741    C    G    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457170    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
7    89933957    rs71961054    GTAGA    G    591.49    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=143.2755;IndelType=D;MQ=60.73;MQ0=0;MQRankSum=0.102;QD=22.75;ReadPosRankSum=-1.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457170    GT:AD:DP:GQ:PL    0/1:10,15:26:5.62:630,0,6
7    89937027    rs35441907    CA    C    211.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=12;HaplotypeScore=29.034;IndelType=D;MQ=60.0;MQ0=0;QD=19.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427396    GT:AD:DP:GQ:PL    1/1:1,10:11:32.86:253,33,0
7    89938588    rs7803620    C    G    2733.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8317;MQ=59.45;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=S391R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89938577_89938681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449577    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2766,217,0
7    89938680    rs1134956    C    T    2356.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9723;MQ=59.6;MQ0=0;MQRankSum=0.075;QD=33.66;ReadPosRankSum=1.13;SNPEFF_AMINO_ACID_CHANGE=T422M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89938577_89938681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449577    GT:AD:DP:GQ:PL    1/1:2,68:70:99:2389,145,0
7    89969831    rs42637    A    G    1681.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469675    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1714,129,0
7    89969878    rs2285399    A    G    1426.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426366    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1459,114,0
7    89975920    rs42646    T    A    493.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469675    GT:AD:DP:GQ:PL    1/1:0,14:15:39.13:527,39,0
7    89976025    rs17621789    C    T    425.64    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.486;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5439;MQ=58.37;MQ0=0;MQRankSum=0.81;QD=9.9;ReadPosRankSum=-1.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469675    GT:AD:DP:GQ:PL    0/1:19,24:43:99:456,0,493
7    89983652    rs42662    A    G    369.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477972    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:403,33,0
7    89983808    rs42663    T    G    1253.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=C105W;SNPEFF_CODON_CHANGE=tgT/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89983772_89983863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450619    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1287,96,0
7    89984409    rs42664    A    G    2332.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.88;SNPEFF_AMINO_ACID_CHANGE=N101S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_89984400_89984544;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426366    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2365,175,0
7    90003694    rs11563547    A    C    1244.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222511    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1277,93,0
7    90014111    rs9886362    G    T    352.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416322    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:385,30,0
7    90042857    rs3810874    G    T    325.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394604    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:359,27,0
7    90225928    rs7782773    T    C    965.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.7;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430760    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:998,78,0
7    90233618    rs6465273    G    A    168.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=9.38;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380050    GT:AD:DP:GQ:PL    0/1:10,8:18:99:199,0,322
7    90356175    rs10240049    T    C    1258.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496279    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1292,102,0
7    90420007    rs111897264    A    G    241.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.416;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.491;QD=12.07;ReadPosRankSum=-0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430760    GT:AD:DP:GQ:PL    0/1:10,10:20:99:271,0,361
7    90546764    rs2286696    A    G    350.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265741    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:384,30,0
7    90584949    rs118091252    A    G    456.86    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.22;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.57;MQ0=0;MQRankSum=-0.67;QD=10.62;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265741    GT:AD:DP:GQ:PL    0/1:24,19:43:99:487,0,771
7    90675165    .    CT    C    446.04    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.905;DP=23;FS=2.066;HRun=3;HaplotypeScore=94.7796;IndelType=D;MQ=61.4;MQ0=0;MQRankSum=0.936;QD=19.39;ReadPosRankSum=-1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265741    GT:AD:DP:GQ:PL    0/1:8,15:23:99:485,0,277
7    90675195    rs3779581    C    T    198.46    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.401;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=-1.627;QD=6.4;ReadPosRankSum=-1.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265741    GT:AD:DP:GQ:PL    0/1:21,10:31:99:228,0,641
7    90747315    rs803167    A    T    225.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.04;FS=0.0;HRun=7;HaplotypeScore=2.6583;MQ=57.48;MQ0=0;QD=8.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265741    GT:AD:DP:GQ:PL    1/1:0,27:27:27.02:258,27,0
7    90894459    .    A    ACCG    416.82    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DP=15;FS=0.0;HRun=0;HaplotypeScore=53.9545;IndelType=I;MQ=57.61;MQ0=0;MQRankSum=-0.471;QD=27.79;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=-89P;SNPEFF_CODON_CHANGE=-/CCG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_7_90893783_90898123;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287934    GT:AD:DP:GQ:PL    0/1:7,8:15:99:456,0,223
7    91503228    rs10266424    C    T    1690.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.01;MQ0=0;QD=35.98;SNPEFF_AMINO_ACID_CHANGE=A274T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_91502636_91504078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406735    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1724,129,0
7    91570290    rs4727267    G    C    1034.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493453    GT:AD:DP:GQ:PL    1/1:0,33:33:84.26:1068,84,0
7    91570615    rs7797369    C    A    125.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356239    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
7    91632306    rs1989779    C    T    1563.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=T1025;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_91630162_91632549;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356239    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1596,117,0
7    91632679    .    T    G    169.09    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=58.11;MQ0=0;MQRankSum=0.296;QD=16.91;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356239    GT:AD:DP:GQ:PL    0/1:3,7:10:78.58:199,0,79
7    91700120    rs66903980    C    CA    140.57    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=39;FS=0.0;HRun=19;HaplotypeScore=374.4014;IndelType=I;MQ=41.96;MQ0=0;MQRankSum=1.133;QD=3.6;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265737    GT:AD:DP:GQ:PL    0/1:25,10:39:90.43:180,0,90
7    91700153    .    C    A    60.20    HaplotypeScoreFilter13;QDFilter2    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.932;DP=67;Dels=0.0;FS=2.941;HRun=9;HaplotypeScore=27.2893;MQ=48.2;MQ0=0;MQRankSum=-5.558;QD=0.9;ReadPosRankSum=3.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265737    GT:AD:DP:GQ:PL    0/1:32,35:67:90.19:90,0,911
7    91714911    rs1063242    C    T    1364.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=P2929S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_91714809_91715000;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358100    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1398,102,0
7    91761053    rs147205401    T    G    237.34    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.9999;MQ=58.78;MQ0=0;MQRankSum=0.857;QD=12.49;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP51A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435873    GT:AD:DP:GQ:PL    0/1:9,10:19:99:267,0,235
7    91761305    rs79562939    CA    C    94.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=9;HaplotypeScore=12.1896;IndelType=D;MQ=64.19;MQ0=0;QD=18.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP51A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003100    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:137,15,0
7    92027187    rs38793    A    G    6353.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DB;DP=181;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8663;MQ=59.87;MQ0=0;MQRankSum=1.27;QD=35.1;ReadPosRankSum=-1.463;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKIB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465883    GT:AD:DP:GQ:PL    1/1:1,180:181:99:6354,433,0
7    92028039    rs38794    C    A    2787.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=59.42;MQ0=0;MQRankSum=1.599;QD=35.28;ReadPosRankSum=-1.022;SNPEFF_AMINO_ACID_CHANGE=L1016M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92027526_92030698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKIB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265742    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2820,214,0
7    92118494    rs35892336    G    C    101.18    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9863;MQ=58.05;MQ0=0;MQRankSum=1.663;QD=8.43;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469417    GT:AD:DP:GQ:PL    0/1:7,4:12:99:131,0,257
7    92119284    rs972923    C    G    253.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248633    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:286,21,0
7    92129161    rs5885806    CA    C    577.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.195;DB;DP=38;FS=0.0;HRun=12;HaplotypeScore=122.471;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=0.195;QD=15.2;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496092    GT:AD:DP:GQ:PL    1/1:10,28:38:35.53:620,36,0
7    92131289    rs10278857    G    T    8554.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.9792;MQ=59.34;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=G455;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92131204_92131393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438045    GT:AD:DP:GQ:PL    1/1:0,249:250:99:8554,647,0
7    92135802    rs6465359    T    A    122.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476923    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
7    92143007    rs38807    G    T    79.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248633    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
7    92147584    rs38809    C    T    4952.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6101;MQ=59.83;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248633    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4953,367,0
7    92161835    rs75703315    A    C    534.25    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=15.26;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=A140;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92161718_92161863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf64;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265732    GT:AD:DP:GQ:PL    0/1:18,17:35:99:564,0,593
7    92321584    rs1972508    G    A    1125.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9983;MQ=59.45;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265734    GT:AD:DP:GQ:PL    1/1:0,42:42:96.29:1158,96,0
7    92732769    rs140921998    T    C    618.52    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.64;DB;DP=47;Dels=0.0;FS=4.291;HRun=2;HaplotypeScore=1.6584;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=13.16;ReadPosRankSum=-0.75;SNPEFF_AMINO_ACID_CHANGE=D881G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92728829_92735418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379958    GT:AD:DP:GQ:PL    0/1:25,21:47:99:649,0,837
7    92733766    rs10279499    C    A    945.99    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=79;Dels=0.0;FS=4.549;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.277;QD=11.97;ReadPosRankSum=-1.244;SNPEFF_AMINO_ACID_CHANGE=V549L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92728829_92735418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379958    GT:AD:DP:GQ:PL    0/1:44,35:79:99:976,0,1392
7    92734451    rs6965201    A    G    695.79    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.066;DB;DP=57;Dels=0.0;FS=3.969;HRun=0;HaplotypeScore=0.7887;MQ=59.6;MQ0=0;MQRankSum=-0.511;QD=12.21;ReadPosRankSum=0.709;SNPEFF_AMINO_ACID_CHANGE=Y320;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92728829_92735418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379958    GT:AD:DP:GQ:PL    0/1:31,26:57:99:726,0,953
7    92734983    rs6969691    A    G    1356.82    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.632;DB;DP=95;Dels=0.0;FS=12.221;HRun=0;HaplotypeScore=2.9318;MQ=60.0;MQ0=0;MQRankSum=0.862;QD=14.28;ReadPosRankSum=-1.672;SNPEFF_AMINO_ACID_CHANGE=I143T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92728829_92735418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379958    GT:AD:DP:GQ:PL    0/1:45,50:95:99:1387,0,1410
7    92760502    rs4268    G    A    342.83    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.655;DB;DP=25;Dels=0.0;FS=4.678;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=13.71;ReadPosRankSum=-0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394472    GT:AD:DP:GQ:PL    0/1:14,11:25:99:373,0,374
7    92764489    rs10488532    C    T    1066.90    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=88;Dels=0.0;FS=0.806;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.188;QD=12.12;ReadPosRankSum=-0.281;SNPEFF_AMINO_ACID_CHANGE=V266I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92759368_92765304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD9L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318238    GT:AD:DP:GQ:PL    0/1:53,35:88:99:1097,0,1849
7    92886812    rs722263    A    G    515.92    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=2.315;DB;DP=29;Dels=0.0;FS=4.41;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.652;QD=17.79;ReadPosRankSum=-0.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438395    GT:AD:DP:GQ:PL    0/1:11,18:29:99:546,0,333
7    92926605    rs17710854    C    T    170.99    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=3.424;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=15.54;ReadPosRankSum=1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484954    GT:AD:DP:GQ:PL    0/1:5,6:11:99:201,0,139
7    92938116    rs73219909    A    G    534.73    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.563;DB;DP=36;Dels=0.0;FS=3.014;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.08;QD=14.85;ReadPosRankSum=-0.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477572    GT:AD:DP:GQ:PL    0/1:16,20:36:99:565,0,456
7    92970847    rs2106432    C    T    687.42    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.721;QD=14.03;ReadPosRankSum=0.134;SNPEFF_AMINO_ACID_CHANGE=L443;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92970739_92970887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC132;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535481    GT:AD:DP:GQ:PL    0/1:26,23:49:99:717,0,884
7    92985252    rs2374639    T    C    852.80    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=58;Dels=0.0;FS=1.01;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=-1.169;QD=14.7;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=L599;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_92985203_92985392;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC132;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535481    GT:AD:DP:GQ:PL    0/1:27,31:58:99:883,0,848
7    92987445    rs2285505    T    C    87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474412    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
7    93067334    rs10713823    TA    T    775.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=64.8849;IndelType=D;MQ=60.49;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359558    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:818,63,0
7    93073147    rs2074123    C    G    877.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359558    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:910,66,0
7    93299072    rs72570686    C    CT    395.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=37;FS=0.0;HRun=11;HaplotypeScore=134.765;IndelType=I;MQ=55.29;MQ0=0;MQRankSum=-0.551;QD=10.41;ReadPosRankSum=-0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455502    GT:AD:DP:GQ:PL    0/1:17,19:37:99:434,0,196
7    93520037    rs80033823    G    T    52.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=51.77;MQ0=0;MQRankSum=-1.307;QD=5.87;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455502    GT:AD:DP:GQ:PL    0/1:5,4:9:82.78:83,0,151
7    93535945    .    A    G    587.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=21.0;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455502    GT:AD:DP:GQ:PL    0/1:9,18:28:99:618,0,304
7    93540348    rs2798    T    G    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.03;MQ0=0;MQRankSum=-1.231;QD=6.98;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428834    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,111
7    93551428    rs4262    C    T    50.80    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=14;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=3.63;ReadPosRankSum=-1.468;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_93551011_93551545;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248564    GT:AD:DP:GQ:PL    0/1:10,4:14:80.79:81,0,208
7    93555283    rs180234    G    A    91.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248564    GT:AD:DP:GQ:PL    0/1:8,4:12:99:121,0,295
7    93555311    rs180233    A    C    355.83    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.994;QD=11.48;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248564    GT:AD:DP:GQ:PL    0/1:19,12:31:99:386,0,618
7    94027043    .    C    CT    1262.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.182;DP=51;FS=2.706;HRun=10;HaplotypeScore=162.9116;IndelType=I;MQ=60.13;MQ0=0;MQRankSum=1.589;QD=24.76;ReadPosRankSum=0.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:5,44:51:99:1305,106,0
7    94030899    rs1800222    T    C    1007.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.55;MQ0=0;QD=31.49;SNPEFF_AMINO_ACID_CHANGE=D82;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_94030879_94030932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,32:32:81.22:1041,81,0
7    94035433    rs17073    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
7    94037778    rs2293739    T    A    656.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:690,51,0
7    94037790    rs2293740    C    A    499.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:533,39,0
7    94038934    rs42518    C    T    1363.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1397,105,0
7    94038966    rs28754326    G    A    1408.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1441,108,0
7    94039032    rs42519    C    T    1154.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=32.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1187,87,0
7    94039900    rs42520    C    T    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
7    94040133    rs389328    T    A    558.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:592,48,0
7    94041937    rs412777    A    C    728.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.064;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.321;QD=26.99;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=P482;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_94041896_94041994;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:1,26:27:26.88:762,27,0
7    94042814    rs3750109    T    C    89.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    94043239    rs42524    C    G    735.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_AMINO_ACID_CHANGE=P549A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_94043206_94043259;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,26:26:60.18:769,60,0
7    94043274    rs421587    A    G    733.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:767,57,0
7    94044803    rs2250365    C    A    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    94045576    rs42526    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297268    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    94047903    rs3216182    AT    A    452.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=10;HaplotypeScore=54.1292;IndelType=D;MQ=60.98;MQ0=0;QD=20.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488298    GT:AD:DP:GQ:PL    1/1:3,19:22:56.98:495,57,0
7    94049356    rs42528    T    C    773.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=38.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488298    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:806,60,0
7    94057418    rs10046552    A    C    175.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469732    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
7    94058395    rs6465412    T    C    314.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.97;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469732    GT:AD:DP:GQ:PL    1/1:0,10:10:30.05:348,30,0
7    94058410    rs11374490    C    CT    422.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=137.2267;IndelType=I;MQ=47.9;MQ0=0;QD=28.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469732    GT:AD:DP:GQ:PL    1/1:1,14:15:42.11:465,42,0
7    94058420    rs11380334    C    CT    168.13    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=18;FS=6.368;HRun=14;HaplotypeScore=191.4373;IndelType=I;MQ=50.12;MQ0=0;MQRankSum=0.085;QD=9.34;ReadPosRankSum=-0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469732    GT:AD:DP:GQ:PL    0/1:10,7:18:18.85:207,0,19
7    94156734    rs10229564    C    T    65.58    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.2;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:5,3:8:95.58:96,0,155
7    94157585    rs67442581    CT    C    137.18    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=34;FS=1.799;HRun=13;HaplotypeScore=157.2765;IndelType=D;MQ=58.44;MQ0=0;MQRankSum=0.769;QD=4.03;ReadPosRankSum=0.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417387    GT:AD:DP:GQ:PL    0/1:21,11:34:99:176,0,303
7    94174854    rs3793326    T    C    1043.23    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.146;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=13.04;ReadPosRankSum=0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1073,0,1228
7    94175073    rs3793325    T    C    88.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.098;QD=8.81;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:5,5:10:99:118,0,170
7    94178749    rs10272136    T    C    105.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.896;QD=8.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:8,4:12:99:136,0,251
7    94178761    rs7801436    C    T    128.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=8.54;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:10,5:15:99:158,0,373
7    94179065    rs7805309    C    A    190.95    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=15.91;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:5,7:12:99:221,0,166
7    94180691    rs10280457    T    C    408.61    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.029;DB;DP=51;Dels=0.0;FS=15.469;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.83;QD=8.01;ReadPosRankSum=-0.837;SNPEFF_AMINO_ACID_CHANGE=A619;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_94180650_94180790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:36,15:51:99:439,0,1188
7    94181480    rs10268833    G    T    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
7    94182373    rs6465417    A    G    446.91    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.501;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=12.77;ReadPosRankSum=0.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:16,18:35:99:477,0,580
7    94183993    rs10280843    G    A    66.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=6.6;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:6,4:10:96.02:96,0,210
7    94184691    rs10238176    T    A    137.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=1.186;QD=12.5;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297273    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,203
7    94247971    rs6465421    C    A    332.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425444    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:366,30,0
7    94257449    .    T    TAC    249.19    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DP=13;FS=0.0;HRun=0;HaplotypeScore=37.1212;IndelType=I;MQ=59.9;MQ0=0;MQRankSum=-0.751;QD=19.17;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265735    GT:AD:DP:GQ:PL    0/1:5,7:13:7.45:288,0,7
7    94897801    rs854522    T    C    1189.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289495    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1222,90,0
7    94898811    rs854524    G    A    5349.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5773;MQ=59.62;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=R1017Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_94898519_94898819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R9A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424654    GT:AD:DP:GQ:PL    1/1:0,156:157:99:5350,391,0
7    94903039    rs2178057    T    C    42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289495    GT:AD:DP:GQ:PL    1/1:0,4:4:8.98:74,9,0
7    94903041    rs2178056    C    A    42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289495    GT:AD:DP:GQ:PL    1/1:0,4:4:8.98:74,9,0
7    94937446    rs662    T    C    563.74    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.415;DB;DP=48;Dels=0.0;FS=6.439;HRun=0;HaplotypeScore=1.7885;MQ=58.55;MQ0=0;MQRankSum=0.516;QD=11.74;ReadPosRankSum=0.475;SNPEFF_AMINO_ACID_CHANGE=Q192R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_94937323_94937523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222381    GT:AD:DP:GQ:PL    0/1:23,25:48:99:594,0,735
7    94940587    rs2074354    G    A    120.76    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.15;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470502    GT:AD:DP:GQ:PL    0/1:1,4:5:13.60:151,0,14
7    94941038    rs1157745    G    T    70.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.76;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222381    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,107
7    94944923    rs854556    C    T    248.27    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=55.66;MQ0=0;MQRankSum=1.532;QD=22.57;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222381    GT:AD:DP:GQ:PL    0/1:2,9:11:15.15:278,0,15
7    94945872    rs854559    G    A    389.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=4.367;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.903;QD=13.92;ReadPosRankSum=2.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222381    GT:AD:DP:GQ:PL    0/1:16,12:28:99:420,0,458
7    94946084    rs854560    A    T    2864.03    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.977;DB;DP=204;Dels=0.0;FS=4.598;HRun=0;HaplotypeScore=4.2975;MQ=59.89;MQ0=0;MQRankSum=0.594;QD=14.04;ReadPosRankSum=-2.391;SNPEFF_AMINO_ACID_CHANGE=L55M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_94946046_94946101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222381    GT:AD:DP:GQ:PL    0/1:109,93:204:99:2894,0,3288
7    94946255    rs3917498    G    T    181.78    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=16.53;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222381    GT:AD:DP:GQ:PL    0/1:5,6:11:99:212,0,180
7    94947799    rs2074351    G    A    115.43    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.665;DB;DP=23;Dels=0.0;FS=5.836;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.385;QD=5.02;ReadPosRankSum=1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222381    GT:AD:DP:GQ:PL    0/1:17,6:23:99:145,0,622
7    94953895    rs705379    G    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542556    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
7    94953913    rs705380    G    C    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    94953949    rs705381    T    C    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542556    GT:AD:DP:GQ:PL    1/1:0,2:2:6:66,6,0
7    94991632    rs17884000    T    C    350.42    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.079;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.713;QD=17.52;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482624    GT:AD:DP:GQ:PL    0/1:7,13:20:99:380,0,241
7    94992244    rs10953143    T    C    106.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.15;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482624    GT:AD:DP:GQ:PL    0/1:3,4:7:99:136,0,100
7    94996913    rs3757708    T    G    244.43    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=18.8;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542556    GT:AD:DP:GQ:PL    0/1:5,8:13:99:274,0,157
7    95001358    rs2375002    A    T    150.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542556    GT:AD:DP:GQ:PL    1/1:0,6:6:18.02:183,18,0
7    95001555    rs1053275    C    T    596.85    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.797;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.501;QD=8.65;ReadPosRankSum=-2.45;SNPEFF_AMINO_ACID_CHANGE=A99;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_95001485_95001650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265627    GT:AD:DP:GQ:PL    0/1:46,22:69:99:627,0,1239
7    95019355    rs6977389    G    A    2618.70    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=9.301;DB;DP=152;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9971;MQ=59.39;MQ0=0;MQRankSum=-0.203;QD=17.23;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542556    GT:AD:DP:GQ:PL    0/1:70,82:152:99:2649,0,1989
7    95024046    rs11970910    A    G    356.78    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=29;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.926;QD=12.3;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542556    GT:AD:DP:GQ:PL    0/1:17,12:29:99:387,0,540
7    95025453    rs2072199    G    A    273.71    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.669;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.95;MQ0=0;MQRankSum=1.091;QD=12.44;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542556    GT:AD:DP:GQ:PL    0/1:12,10:22:99:304,0,371
7    95034821    rs9641164    A    T    703.44    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.983;DB;DP=41;Dels=0.0;FS=1.511;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.484;QD=17.16;ReadPosRankSum=0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459842    GT:AD:DP:GQ:PL    0/1:18,23:41:99:733,0,593
7    95054007    rs12704795    T    G    68.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.83;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222572    GT:AD:DP:GQ:PL    0/1:4,3:7:98.79:99,0,145
7    95124903    rs17703967    C    T    42.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.01;MQ0=0;MQRankSum=0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325885    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:72,0,24
7    95125050    rs66477905    CTT    C    170.48    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=28;FS=0.0;HRun=16;HaplotypeScore=168.0029;IndelType=D;MQ=56.5;MQ0=0;MQRankSum=-0.154;QD=5.88;ReadPosRankSum=-0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325885    GT:AD:DP:GQ:PL    0/1:9,12:28:99:210,0,326
7    95216247    rs10247649    A    G    90.68    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.322;QD=11.33;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498190    GT:AD:DP:GQ:PL    0/1:3,5:8:95.89:121,0,96
7    95216262    rs4729201    A    G    169.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.6;QD=14.13;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498190    GT:AD:DP:GQ:PL    0/1:4,8:12:99:200,0,116
7    95216394    rs4727323    T    G    82.96    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.414;DB;DP=35;Dels=0.0;FS=2.006;HRun=1;HaplotypeScore=2.7652;MQ=49.96;MQ0=0;MQRankSum=1.877;QD=2.37;ReadPosRankSum=-0.668;SNPEFF_AMINO_ACID_CHANGE=A305;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_95216322_95216435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542888    GT:AD:DP:GQ:PL    0/1:23,12:35:99:113,0,644
7    95217027    rs45507091    G    A    466.72    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.607;DB;DP=26;Dels=0.0;FS=1.752;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.08;QD=17.95;ReadPosRankSum=1.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005178    GT:AD:DP:GQ:PL    0/1:10,16:26:99:497,0,342
7    95218737    rs2073983    G    A    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005178    GT:AD:DP:GQ:PL    0/1:2,2:4:64.45:71,0,64
7    95442405    rs11452827    C    CT    178.56    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=0.022;DB;DP=31;FS=0.0;HRun=14;HaplotypeScore=232.9579;IndelType=I;MQ=55.37;MQ0=0;MQRankSum=0.285;QD=5.76;ReadPosRankSum=0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:19,10:31:99:218,0,179
7    95442690    rs111475172    T    TA    80.17    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=25;FS=0.0;HRun=15;HaplotypeScore=152.9402;IndelType=I;MQ=56.14;MQ0=0;MQRankSum=-0.318;QD=3.21;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524053    GT:AD:DP:GQ:PL    0/1:15,8:25:99:119,0,103
7    95457160    rs1227517    C    T    479.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:512,39,0
7    95457256    rs41278818    G    A    1426.34    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.735;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.973;QD=16.03;ReadPosRankSum=1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:43,46:89:99:1456,0,1415
7    95606624    rs12540849    A    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    95614022    rs6968143    G    C    441.11    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=4.0;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.333;QD=19.18;ReadPosRankSum=1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:10,13:23:99:471,0,298
7    95614078    rs6967779    A    C    1000.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DB;DP=68;Dels=0.0;FS=1.724;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.219;QD=14.71;ReadPosRankSum=-3.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:34,34:68:99:1030,0,1100
7    95614467    rs2073984    G    T    78.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.69;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:108,0,65
7    95614483    rs6950751    T    A    65.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:1,3:4:30.62:95,0,31
7    95616309    rs17705339    T    C    1577.74    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.308;DB;DP=112;Dels=0.0;FS=1.378;HRun=1;HaplotypeScore=1.5661;MQ=59.38;MQ0=0;MQRankSum=-0.758;QD=14.09;ReadPosRankSum=0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:61,51:112:99:1608,0,2045
7    95616330    rs62467724    G    A    2041.73    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=4.647;DB;DP=138;Dels=0.0;FS=1.822;HRun=3;HaplotypeScore=2.5242;MQ=59.67;MQ0=0;MQRankSum=-0.223;QD=14.8;ReadPosRankSum=-0.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:62,75:138:99:2072,0,1927
7    95625189    rs10265938    T    C    575.69    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.85;DB;DP=42;Dels=0.0;FS=2.183;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.163;QD=13.71;ReadPosRankSum=-1.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    0/1:23,19:42:99:606,0,695
7    95668664    rs1048666    C    A    693.39    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.676;DB;DP=49;Dels=0.0;FS=1.185;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=-0.571;QD=14.15;ReadPosRankSum=-1.513;SNPEFF_AMINO_ACID_CHANGE=G460;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_95668589_95668733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359388    GT:AD:DP:GQ:PL    0/1:23,26:49:99:723,0,782
7    95709602    rs42083    C    T    581.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=38.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:615,45,0
7    95709666    rs42082    C    A    1323.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324972    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1357,102,0
7    95727014    rs7794344    T    C    179.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537881    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:212,15,0
7    95818475    rs6957286    G    T    92.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472162    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
7    95820219    rs4487672    T    C    117.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472162    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:150,12,0
7    95822281    rs143747068    T    C    275.98    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.55;MQ0=0;MQRankSum=1.041;QD=17.25;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472162    GT:AD:DP:GQ:PL    0/1:5,11:16:99:306,0,162
7    95864108    rs6957975    T    C    3346.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265631    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3347,259,0
7    95936163    rs12704843    G    A    6184.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=177;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8533;MQ=59.67;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265631    GT:AD:DP:GQ:PL    1/1:1,176:177:99:6185,460,0
7    96116813    rs10250692    T    C    311.67    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=17.32;ReadPosRankSum=-0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092031.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356686    GT:AD:DP:GQ:PL    0/1:6,11:18:99:342,0,204
7    96279746    rs6465531    A    G    117.02    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.619;DB;DP=20;Dels=0.0;FS=5.727;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.619;QD=5.85;ReadPosRankSum=-2.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SHFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417009    GT:AD:DP:GQ:PL    0/1:14,6:20:99:147,0,397
7    96338929    rs10250534    A    G    1646.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=58.9;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SHFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248566    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1679,144,0
7    96635420    .    A    AGCC    106.85    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DP=25;FS=0.0;HRun=0;HaplotypeScore=258.8916;IndelType=I;MQ=58.31;MQ0=0;MQRankSum=0.72;QD=4.27;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=Q44QP;SNPEFF_CODON_CHANGE=cag/caGCCg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_7_96634860_96635725;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLX6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518156    GT:AD:DP:GQ:PL    0/1:17,8:25:64.33:146,0,64
7    96651406    rs1207733    A    G    454.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222598    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:487,42,0
7    96747192    rs62624461    T    C    495.58    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=43;Dels=0.0;FS=2.96;HRun=0;HaplotypeScore=0.9894;MQ=59.46;MQ0=0;MQRankSum=0.394;QD=11.53;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=F53L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_96747035_96747209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACN9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360382    GT:AD:DP:GQ:PL    0/1:25,18:43:99:526,0,861
7    97361784    rs2072100    C    T    1264.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319273    GT:AD:DP:GQ:PL    1/1:0,32:32:96.32:1297,96,0
7    97363472    rs67877395    C    G    295.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495916    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:329,27,0
7    97365842    rs1229434    C    T    166.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495916    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
7    97481926    rs17344752    A    G    65.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.13;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462436    GT:AD:DP:GQ:PL    0/1:5,3:8:95.04:95,0,183
7    97483921    rs1049677    G    C    1290.23    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.116;DB;DP=99;Dels=0.0;FS=2.644;HRun=0;HaplotypeScore=2.5744;MQ=60.0;MQ0=0;MQRankSum=-0.647;QD=13.03;ReadPosRankSum=-0.754;SNPEFF_AMINO_ACID_CHANGE=L320;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_97483892_97483992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437628    GT:AD:DP:GQ:PL    0/1:52,47:99:99:1320,0,1508
7    97486213    rs2074891    T    C    484.05    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.819;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.774;QD=14.67;ReadPosRankSum=0.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442734    GT:AD:DP:GQ:PL    0/1:16,17:33:99:514,0,563
7    97487971    rs7792744    T    C    74.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.83;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442734    GT:AD:DP:GQ:PL    0/1:2,3:5:60.85:104,0,61
7    97488569    rs1049674    A    T    1497.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=V127E;SNPEFF_CODON_CHANGE=gTa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_97488525_97488710;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437628    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1530,114,0
7    97488733    rs7797354    T    C    337.72    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.737;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=59.2;MQ0=0;MQRankSum=-1.106;QD=11.65;ReadPosRankSum=-0.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437657    GT:AD:DP:GQ:PL    0/1:16,13:29:99:368,0,466
7    97488790    rs41278833    A    G    252.60    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.448;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=16.84;ReadPosRankSum=-0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437657    GT:AD:DP:GQ:PL    0/1:7,8:15:99:283,0,243
7    97498535    rs6465630    A    G    349.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.839;DB;DP=22;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.051;QD=15.9;ReadPosRankSum=0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000175506    GT:AD:DP:GQ:PL    0/1:11,11:22:99:380,0,300
7    97577425    rs13224124    C    T    111.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9983;MQ=46.45;MQ0=2;MQRankSum=-2.533;QD=7.95;ReadPosRankSum=-0.529;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC004967.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455678    GT:AD:DP:GQ:PL    0/1:7,7:14:99:141,0,260
7    97595880    .    G    GA    208.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DP=21;FS=3.274;HRun=9;HaplotypeScore=83.4543;IndelType=I;MQ=47.39;MQ0=0;MQRankSum=-0.529;QD=9.94;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004967.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453589    GT:AD:DP:GQ:PL    0/1:12,9:21:99:248,0,157
7    97595942    rs2894158    T    C    1003.75    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.224;DB;DP=63;Dels=0.0;FS=1.229;HRun=0;HaplotypeScore=1.8216;MQ=44.9;MQ0=0;MQRankSum=-0.201;QD=15.93;ReadPosRankSum=0.712;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004967.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453589    GT:AD:DP:GQ:PL    0/1:28,35:63:99:1034,0,758
7    97596092    rs3957046    T    A    1026.08    MQFilter40    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DB;DP=175;Dels=0.0;FS=2.093;HRun=2;HaplotypeScore=0.9469;MQ=21.71;MQ0=84;MQRankSum=-0.752;QD=5.86;ReadPosRankSum=1.557;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004967.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453589    GT:AD:DP:GQ:PL    0/1:99,74:175:99:1056,0,734
7    97599296    rs7784048    C    T    140.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.73;ReadPosRankSum=0.717;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004967.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453589    GT:AD:DP:GQ:PL    0/1:6,5:11:99:170,0,219
7    97599691    rs78988829    ATTT    A    195.84    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.069;DB;DP=27;FS=7.404;HRun=16;HaplotypeScore=217.0858;IndelType=D;MQ=47.36;MQ0=0;MQRankSum=0.433;QD=6.12;ReadPosRankSum=0.818;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004967.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453589    GT:AD:DP:GQ:PL    0/1:13,11:27:31.75:235,0,32
7    97599772    rs11982759    G    C    130.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.24;MQ0=0;MQRankSum=0.851;QD=13.04;ReadPosRankSum=1.268;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC004967.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453589    GT:AD:DP:GQ:PL    0/1:5,5:10:99:160,0,110
7    97616154    rs10231883    A    G    33.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=1.38;QD=5.62;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473987    GT:AD:DP:GQ:PL    0/1:4,2:6:63.71:64,0,144
7    97617658    rs13242307    C    G    195.98    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.871;DB;DP=22;Dels=0.0;FS=3.882;HRun=0;HaplotypeScore=0.0;MQ=52.68;MQ0=0;MQRankSum=-1.669;QD=8.91;ReadPosRankSum=0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257627    GT:AD:DP:GQ:PL    0/1:13,9:22:99:226,0,458
7    97617697    rs12704956    A    G    244.75    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.146;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.51;MQ0=0;MQRankSum=-1.693;QD=7.65;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257627    GT:AD:DP:GQ:PL    0/1:20,12:32:99:275,0,668
7    97784061    rs17435590    T    C    941.18    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7883;MQ=60.0;MQ0=0;MQRankSum=-1.086;QD=13.26;ReadPosRankSum=0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMTK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493372    GT:AD:DP:GQ:PL    0/1:36,35:71:99:971,0,1106
7    97816327    rs6465657    C    T    760.86    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=3.716;DB;DP=64;Dels=0.0;FS=3.782;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.963;QD=11.89;ReadPosRankSum=-2.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMTK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297293    GT:AD:DP:GQ:PL    0/1:37,27:64:99:791,0,971
7    97822115    rs11765552    T    A    1517.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.25;DB;DP=119;Dels=0.0;FS=2.391;HRun=0;HaplotypeScore=1.8737;MQ=59.42;MQ0=0;MQRankSum=-0.486;QD=12.75;ReadPosRankSum=0.964;SNPEFF_AMINO_ACID_CHANGE=L780M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_97820926_97823884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMTK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297293    GT:AD:DP:GQ:PL    0/1:68,51:119:99:1548,0,2150
7    97822210    rs3801294    G    A    1344.59    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.09;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.26;MQ0=0;MQRankSum=-0.564;QD=13.45;ReadPosRankSum=-0.242;SNPEFF_AMINO_ACID_CHANGE=P811;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_97820926_97823884;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMTK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297293    GT:AD:DP:GQ:PL    0/1:51,49:100:99:1375,0,1613
7    97834704    rs35428901    C    G    170.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=15.5;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMTK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297293    GT:AD:DP:GQ:PL    0/1:4,6:10:99:200,0,122
7    97851109    rs4729416    T    C    710.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476659    GT:AD:DP:GQ:PL    1/1:0,28:28:60.17:744,60,0
7    97862429    rs60883114    T    A    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471397    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
7    97873994    rs1874344    G    A    1259    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=1.68;DB;DP=69;Dels=0.0;FS=10.138;HRun=0;HaplotypeScore=0.9995;MQ=59.33;MQ0=0;MQRankSum=2.125;QD=18.25;ReadPosRankSum=-0.19;SNPEFF_AMINO_ACID_CHANGE=Y140;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_97873883_97874005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379795    GT:AD:DP:GQ:PL    0/1:25,44:69:99:1289,0,587
7    97874094    rs903592    C    T    795.55    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.805;DB;DP=48;Dels=0.0;FS=14.681;HRun=0;HaplotypeScore=0.9159;MQ=57.56;MQ0=0;MQRankSum=1.63;QD=16.57;ReadPosRankSum=0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415086    GT:AD:DP:GQ:PL    0/1:19,29:48:99:826,0,546
7    97911883    rs4448203    C    T    109.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=13.68;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BRI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297290    GT:AD:DP:GQ:PL    0/1:3,5:8:88.50:139,0,89
7    97920273    rs138492468    TGGGGTGGG    T    513.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=107.531;IndelType=D;MQ=38.13;MQ0=0;MQRankSum=-1.666;QD=57.09;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093799.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005260    GT:AD:DP:GQ:PL    0/1:3,6:9:99:553,0,219
7    97920305    .    G    A    181.17    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.664;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.62;MQ0=0;MQRankSum=-2.219;QD=15.1;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093799.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005260    GT:AD:DP:GQ:PL    0/1:3,9:12:89:211,0,89
7    97920623    rs7015    A    G    772.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.83;MQ0=0;QD=35.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093799.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005260    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:805,60,0
7    97933588    rs35637370    C    T    313.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.769;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=13.07;ReadPosRankSum=-0.339;SNPEFF_AMINO_ACID_CHANGE=A448T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_97933508_97933688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093799.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000005260    GT:AD:DP:GQ:PL    0/1:12,12:24:99:344,0,387
7    97933601    rs1045916    C    T    314.27    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.115;QD=12.09;ReadPosRankSum=-0.408;SNPEFF_AMINO_ACID_CHANGE=L443;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_97933508_97933688;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093799.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005260    GT:AD:DP:GQ:PL    0/1:12,14:26:99:344,0,364
7    97946450    rs1631779    C    A    307.34    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.418;QD=13.97;ReadPosRankSum=0.297;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093799.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473569    GT:AD:DP:GQ:PL    0/1:12,10:22:99:337,0,390
7    98256335    rs705318    G    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265634    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    98256357    rs5886078    C    CA    140.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=18.1244;IndelType=I;MQ=64.19;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265634    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:182,12,0
7    98446566    rs7806456    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461092    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    98460824    rs10238224    C    A    800.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=36.41;SNPEFF_AMINO_ACID_CHANGE=V11;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_98460718_98461023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM130;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445790    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:834,63,0
7    98461062    rs1548622    G    A    174.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339375    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
7    98478605    rs76861359    G    A    71.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.358;QD=14.35;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    0/1:2,3:5:64.51:102,0,65
7    98495299    rs10642390    G    GTT    926.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=4;HaplotypeScore=191.2267;IndelType=I;MQ=51.38;MQ0=0;QD=40.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:5,15:23:64.41:969,64,0
7    98498506    rs7456230    T    C    90.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
7    98500842    rs6465730    A    G    74.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
7    98500956    rs7777927    C    T    1449.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1483,111,0
7    98501377    rs180709710    G    A    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.69;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:65,0,32
7    98503707    rs34508246    TG    T    230.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=22.4626;IndelType=D;MQ=56.62;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
7    98513300    rs1859662    C    T    1642.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4258;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1676,126,0
7    98548682    rs140708777    C    CTGTGTG    2025.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=0;HaplotypeScore=443.2377;IndelType=I;MQ=45.63;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:41,12:62:82.16:2067,82,0
7    98548842    rs7779292    C    G    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
7    98550654    rs72400744    TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG    T    768.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=345.2286;IndelType=D;MQ=38.33;MQ0=0;QD=54.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:9,5:14:15.05:811,15,0
7    98551152    rs3815232    C    T    342.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:376,30,0
7    98553739    rs78658185    T    TC    735.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=47.8004;IndelType=I;MQ=61.07;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:778,54,0
7    98558880    rs160384    G    C    4244.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6905;MQ=59.82;MQ0=0;MQRankSum=0.467;QD=33.42;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:1,126:127:99:4245,313,0
7    98559241    rs13240075    T    A    117.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:150,12,0
7    98588256    rs78509173    G    T    132.86    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.163;QD=8.3;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    0/1:10,6:16:99:163,0,322
7    98608606    rs62472037    T    A    31.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=7.85;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355540    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:61,0,72
7    98645517    rs219824    G    A    629.79    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.122;DB;DP=53;Dels=0.0;FS=2.26;HRun=2;HaplotypeScore=1.7356;MQ=59.56;MQ0=0;MQRankSum=0.506;QD=11.88;ReadPosRankSum=0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMURF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480055    GT:AD:DP:GQ:PL    0/1:28,25:53:99:660,0,923
7    98645565    rs219825    C    G    271.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.945;QD=13.55;ReadPosRankSum=-2.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMURF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480055    GT:AD:DP:GQ:PL    0/1:10,10:20:99:301,0,339
7    98647139    rs219826    C    T    848.03    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=0.733;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=58.76;MQ0=0;MQRankSum=2.265;QD=15.14;ReadPosRankSum=1.982;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMURF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480055    GT:AD:DP:GQ:PL    0/1:23,33:56:99:878,0,657
7    98649628    rs2008258    A    G    128.51    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=21.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMURF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480055    GT:AD:DP:GQ:PL    0/1:1,5:6:24.18:158,0,24
7    98650051    rs219797    G    C    448.41    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.918;DB;DP=33;Dels=0.0;FS=1.744;HRun=3;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.65;QD=13.59;ReadPosRankSum=1.612;SNPEFF_AMINO_ACID_CHANGE=S166;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_98649828_98650069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMURF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361125    GT:AD:DP:GQ:PL    0/1:14,19:33:99:478,0,340
7    98650099    rs219798    T    C    133.55    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.555;QD=10.27;ReadPosRankSum=-0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMURF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472627    GT:AD:DP:GQ:PL    0/1:7,6:13:99:164,0,229
7    98779740    rs6465740    G    T    1335.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327442    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1368,105,0
7    98782750    rs10953283    C    T    1672    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=T312;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_98782552_98782785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327442    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1705,126,0
7    99235895    rs118077012    G    A    223.36    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=24.82;ReadPosRankSum=-0.762;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GS1-259H13.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455459    GT:AD:DP:GQ:PL    0/1:2,7:9:58.15:253,0,58
7    99293475    rs2740565    T    A    2641.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.77;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292414    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2675,199,0
7    99293859    rs11401860    C    CT    1417.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.241;DB;DP=86;FS=2.222;HRun=13;HaplotypeScore=416.1271;IndelType=I;MQ=59.13;MQ0=0;MQRankSum=0.889;QD=16.49;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292414    GT:AD:DP:GQ:PL    1/1:26,55:86:74.81:1460,75,0
7    99297601    rs2037500    A    C    3224.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292414    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3258,253,0
7    99297804    rs2177180    C    T    320.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336374    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:353,27,0
7    99302994    rs10211    C    T    601.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292414    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:634,48,0
7    99303094    rs12360    G    A    1916.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292414    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1949,144,0
7    99306566    rs2687077    C    T    700.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292414    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:733,54,0
7    99306685    rs2257401    C    G    2348.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=R409T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99306658_99306884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292414    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2382,178,0
7    99314986    rs2687075    A    G    997.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.58;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292414    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1030,75,0
7    99365943    rs2687116    C    A    1315.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415003    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1348,99,0
7    99370493    rs2738258    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336411    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    99459144    rs503115    T    C    37.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.38;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP3A43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222382    GT:AD:DP:GQ:PL    0/1:2,2:4:67.52:68,0,73
7    99473624    rs1025576    T    G    397.51    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.734;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.496;QD=15.9;ReadPosRankSum=1.224;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2AE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316368    GT:AD:DP:GQ:PL    0/1:12,13:25:99:428,0,413
7    99474729    rs2572022    T    C    123.40    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=58.84;MQ0=0;MQRankSum=1.25;QD=6.17;ReadPosRankSum=0.509;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM4;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,5:20:99:153,0,394
7    99489868    rs33998596    G    C    2201.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.575;DB;DP=159;Dels=0.0;FS=0.625;HRun=0;HaplotypeScore=1.8317;MQ=59.71;MQ0=0;MQRankSum=-0.423;QD=13.85;ReadPosRankSum=0.983;SNPEFF_AMINO_ACID_CHANGE=S304C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99489252_99490369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542799    GT:AD:DP:GQ:PL    0/1:79,79:159:99:2232,0,2167
7    99490190    rs35432946    G    A    1066.51    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.057;DB;DP=83;Dels=0.0;FS=6.062;HRun=0;HaplotypeScore=1.6208;MQ=59.55;MQ0=0;MQRankSum=1.152;QD=12.85;ReadPosRankSum=-0.574;SNPEFF_AMINO_ACID_CHANGE=P197S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99489252_99490369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542799    GT:AD:DP:GQ:PL    0/1:44,37:83:99:1097,0,1346
7    99499872    rs2527913    A    T    94.11    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=8.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349062    GT:AD:DP:GQ:PL    0/1:7,4:11:99:124,0,256
7    99500911    rs2247761    A    G    248.16    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.368;DB;DP=26;Dels=0.0;FS=1.734;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=9.54;ReadPosRankSum=-1.444;SNPEFF_AMINO_ACID_CHANGE=S113;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99500841_99500938;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542799    GT:AD:DP:GQ:PL    0/1:16,10:26:99:278,0,564
7    99501313    rs2572003    A    T    116.69    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.227;QD=7.29;ReadPosRankSum=0.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496896    GT:AD:DP:GQ:PL    0/1:11,5:16:99:147,0,390
7    99514097    rs117656934    T    C    113.41    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=16.2;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349062    GT:AD:DP:GQ:PL    0/1:2,5:7:63.02:143,0,63
7    99514417    rs2571997    A    C    1407.79    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=3.278;DB;DP=109;Dels=0.0;FS=1.379;HRun=1;HaplotypeScore=3.8946;MQ=59.23;MQ0=0;MQRankSum=0.663;QD=12.92;ReadPosRankSum=-0.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349062    GT:AD:DP:GQ:PL    0/1:50,59:109:99:1438,0,1535
7    99569225    rs2074567    T    C    153.39    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=21.91;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AZGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292401    GT:AD:DP:GQ:PL    0/1:2,5:7:50.75:183,0,51
7    99569394    rs17295356    G    A    726.54    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.472;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=1.085;QD=13.45;ReadPosRankSum=-0.437;SNPEFF_AMINO_ACID_CHANGE=I101;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99569369_99569629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AZGP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411734    GT:AD:DP:GQ:PL    0/1:31,23:54:99:757,0,929
7    99580907    rs2301806    C    G    474.29    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.223;DB;DP=28;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=1.846;QD=16.94;ReadPosRankSum=1.319;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AZGP1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397935    GT:AD:DP:GQ:PL    0/1:10,18:28:99:504,0,302
7    99585150    rs7803714    G    T    389.98    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.564;DB;DP=24;Dels=0.0;FS=3.949;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.239;QD=16.25;ReadPosRankSum=-0.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AZGP1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397935    GT:AD:DP:GQ:PL    0/1:9,15:24:99:420,0,210
7    99590246    rs117996395    G    A    832.37    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=4.243;DB;DP=55;Dels=0.0;FS=1.518;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.792;QD=15.13;ReadPosRankSum=0.009;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP4-604G5.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419978    GT:AD:DP:GQ:PL    0/1:27,28:55:99:862,0,770
7    99620994    rs55634428    T    C    239.54    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.326;QD=11.41;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZKSCAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324306    GT:AD:DP:GQ:PL    0/1:13,8:21:99:270,0,453
7    99654600    rs11558475    A    G    2477.28    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.401;DB;DP=207;Dels=0.0;FS=1.757;HRun=0;HaplotypeScore=1.8633;MQ=59.78;MQ0=0;MQRankSum=-0.703;QD=11.97;ReadPosRankSum=0.595;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477297    GT:AD:DP:GQ:PL    0/1:108,99:207:99:2507,0,3224
7    99654689    rs11558476    G    A    1997.14    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.26;DB;DP=146;Dels=0.0;FS=2.218;HRun=1;HaplotypeScore=3.2327;MQ=59.84;MQ0=0;MQRankSum=-0.044;QD=13.68;ReadPosRankSum=-0.604;SNPEFF_AMINO_ACID_CHANGE=Q20;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99654534_99655028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292450    GT:AD:DP:GQ:PL    0/1:75,71:146:99:2027,0,2475
7    99673359    rs56054049    A    C    117.39    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.881;QD=11.74;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479192    GT:AD:DP:GQ:PL    0/1:4,5:9:99:147,0,142
7    99686873    rs4729575    G    T    557.29    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.579;DB;DP=39;Dels=0.0;FS=3.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.199;QD=14.29;ReadPosRankSum=-2.192;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MCM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303887    GT:AD:DP:GQ:PL    0/1:17,22:39:99:587,0,499
7    99691740    rs1527423    G    A    519.98    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.838;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7333;MQ=59.53;MQ0=0;MQRankSum=1.914;QD=10.61;ReadPosRankSum=-0.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303904    GT:AD:DP:GQ:PL    0/1:26,23:49:99:550,0,850
7    99692993    rs2261360    G    T    76.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.78;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303904    GT:AD:DP:GQ:PL    0/1:3,3:6:89.40:107,0,89
7    99693078    rs12267    G    A    66.03    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=3.233;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=6.6;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=I361;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99693010_99693093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MCM7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354230    GT:AD:DP:GQ:PL    0/1:7,3:10:96.02:96,0,228
7    99693337    rs7799115    T    C    2099.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.73;MQ0=0;QD=30.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303904    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2133,160,0
7    99696370    rs1534309    C    G    1349.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MCM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465688    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1382,102,0
7    99699436    rs1122598    G    A    753.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.013;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.39;MQ0=0;MQRankSum=-0.444;QD=20.92;ReadPosRankSum=-1.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359593    GT:AD:DP:GQ:PL    0/1:12,24:36:99:783,0,244
7    99699626    rs2293481    T    C    281.67    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9973;MQ=58.95;MQ0=0;MQRankSum=-0.342;QD=12.8;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359593    GT:AD:DP:GQ:PL    0/1:9,11:22:99:312,0,214
7    99701176    rs999885    G    A    1429.69    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.297;DB;DP=97;Dels=0.0;FS=0.798;HRun=2;HaplotypeScore=0.9469;MQ=59.04;MQ0=0;MQRankSum=-0.295;QD=14.74;ReadPosRankSum=-0.972;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478501    GT:AD:DP:GQ:PL    0/1:42,55:97:99:1460,0,1242
7    99701640    rs4729577    T    C    413.19    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.063;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.039;QD=19.68;ReadPosRankSum=0.117;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394061    GT:AD:DP:GQ:PL    0/1:6,15:21:99:443,0,190
7    99703407    rs71515300    GA    G    40.48    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=11;FS=0.0;HRun=13;HaplotypeScore=44.7509;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=3.68;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394061    GT:AD:DP:GQ:PL    0/1:6,5:11:79.51:80,0,116
7    99703958    rs2293479    T    C    286.03    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.038;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.096;QD=13.62;ReadPosRankSum=1.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394061    GT:AD:DP:GQ:PL    0/1:10,11:21:99:316,0,238
7    99704796    rs13309    A    T    129.57    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DB;DP=17;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.685;QD=7.62;ReadPosRankSum=0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394061    GT:AD:DP:GQ:PL    0/1:12,5:17:99:160,0,368
7    99704827    rs1050542    A    G    102.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=15;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.164;QD=6.83;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359593    GT:AD:DP:GQ:PL    0/1:10,5:15:99:132,0,332
7    99707712    rs2272338    A    G    1236.24    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.347;DB;DP=109;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.3237;MQ=59.36;MQ0=0;MQRankSum=0.313;QD=11.34;ReadPosRankSum=-0.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359593    GT:AD:DP:GQ:PL    0/1:61,48:109:99:1266,0,2010
7    99707950    rs4134917    C    T    971.26    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.277;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.988;QD=15.67;ReadPosRankSum=0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359593    GT:AD:DP:GQ:PL    0/1:32,30:62:99:1001,0,1002
7    99710584    rs4134904    A    AG    971.37    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.039;DB;DP=51;FS=5.137;HRun=1;HaplotypeScore=119.6183;IndelType=I;MQ=59.66;MQ0=0;MQRankSum=-1.359;QD=19.05;ReadPosRankSum=-1.145;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421755    GT:AD:DP:GQ:PL    0/1:25,26:51:99:1010,0,672
7    99711461    rs67798766    AC    A    188.37    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=47;FS=0.0;HRun=10;HaplotypeScore=275.2732;IndelType=D;MQ=58.37;MQ0=0;MQRankSum=-0.129;QD=4.01;ReadPosRankSum=-1.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP4M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421755    GT:AD:DP:GQ:PL    0/1:36,10:47:99:227,0,360
7    99720640    rs1569055    C    G    313.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNPY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470153    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:347,27,0
7    99746303    rs146848203    C    G    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341942    GT:AD:DP:GQ:PL    0/1:2,2:4:68.77:70,0,69
7    99747130    rs12878    G    A    1515.53    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.407;DB;DP=110;Dels=0.0;FS=7.533;HRun=0;HaplotypeScore=1.4972;MQ=59.37;MQ0=0;MQRankSum=0.525;QD=13.78;ReadPosRankSum=1.226;SNPEFF_AMINO_ACID_CHANGE=A4;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99747122_99747202;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf59;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341942    GT:AD:DP:GQ:PL    0/1:56,54:110:99:1546,0,1512
7    99747378    rs7785392    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275726    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    99751017    rs3736591    A    G    1256.38    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.285;DB;DP=87;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=2.3782;MQ=59.2;MQ0=0;MQRankSum=-0.833;QD=14.44;ReadPosRankSum=0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275726    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1286,0,1119
7    99751281    rs3736590    G    T    777.37    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.558;DB;DP=56;Dels=0.0;FS=1.029;HRun=1;HaplotypeScore=2.9629;MQ=59.59;MQ0=0;MQRankSum=-0.525;QD=13.88;ReadPosRankSum=-0.377;SNPEFF_AMINO_ACID_CHANGE=G115C;SNPEFF_CODON_CHANGE=Ggt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99751023_99751633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf59;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441173    GT:AD:DP:GQ:PL    0/1:29,27:56:99:807,0,898
7    99752566    rs55839153    G    A    751.28    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.183;DB;DP=38;Dels=0.0;FS=3.419;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=1.013;QD=19.77;ReadPosRankSum=-1.013;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472061    GT:AD:DP:GQ:PL    0/1:12,26:38:99:781,0,281
7    99753121    rs2272337    A    G    348.47    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.285;QD=12.02;ReadPosRankSum=1.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472061    GT:AD:DP:GQ:PL    0/1:16,13:29:99:378,0,538
7    99753870    rs11764584    G    A    68.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=11.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472061    GT:AD:DP:GQ:PL    0/1:2,4:6:67.96:98,0,68
7    99757612    rs3823646    G    A    269.16    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=26;Dels=0.0;FS=4.06;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.259;QD=10.35;ReadPosRankSum=-0.966;SNPEFF_AMINO_ACID_CHANGE=A405V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99757439_99758582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAL3ST4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426974    GT:AD:DP:GQ:PL    0/1:15,11:26:99:299,0,483
7    99758136    rs3800951    T    G    1457.56    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.233;DB;DP=106;Dels=0.0;FS=3.62;HRun=1;HaplotypeScore=2.7333;MQ=60.0;MQ0=0;MQRankSum=0.063;QD=13.75;ReadPosRankSum=-0.923;SNPEFF_AMINO_ACID_CHANGE=H191P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99757439_99758582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAL3ST4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411994    GT:AD:DP:GQ:PL    0/1:55,51:106:99:1488,0,1711
7    99771305    rs112290893    C    CTCTT    1663.33    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.852;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=211.4512;IndelType=I;MQ=60.26;MQ0=0;MQRankSum=0.721;QD=29.7;ReadPosRankSum=-2.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482569    GT:AD:DP:GQ:PL    0/1:29,24:56:99:1702,0,1174
7    99772298    rs10252037    A    C    478.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482569    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:512,39,0
7    99774122    rs12705073    T    C    69.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.81;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292377    GT:AD:DP:GQ:PL    0/1:2,3:5:44.18:99,0,44
7    99778227    rs11531577    G    T    2392.73    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.426;DB;DP=191;Dels=0.0;FS=2.527;HRun=2;HaplotypeScore=4.2893;MQ=59.64;MQ0=0;MQRankSum=-0.633;QD=12.53;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=L16F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99778116_99778295;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317296    GT:AD:DP:GQ:PL    0/1:103,87:191:99:2423,0,3118
7    99778285    rs2272343    A    C    1901.43    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=6.191;DB;DP=149;Dels=0.0;FS=4.335;HRun=2;HaplotypeScore=5.9357;MQ=59.27;MQ0=0;MQRankSum=0.67;QD=12.76;ReadPosRankSum=-1.544;SNPEFF_AMINO_ACID_CHANGE=T36P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99778116_99778295;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317296    GT:AD:DP:GQ:PL    0/1:82,67:149:99:1931,0,2339
7    99780283    rs2056726    G    A    1357.51    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=6.764;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.883;QD=14.76;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482546    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1388,0,1357
7    99795921    rs72388043    GAGGGGGTAAT    G    901.31    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=17;FS=9.249;HRun=0;HaplotypeScore=173.3425;IndelType=D;MQ=41.08;MQ0=0;MQRankSum=-3.123;QD=50.07;ReadPosRankSum=2.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436886    GT:AD:DP:GQ:PL    0/1:7,11:17:99:940,0,764
7    99796146    rs3735241    A    C    1081.97    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.666;DB;DP=98;Dels=0.0;FS=0.825;HRun=3;HaplotypeScore=1.445;MQ=58.72;MQ0=0;MQRankSum=-1.051;QD=11.04;ReadPosRankSum=-0.596;SNPEFF_AMINO_ACID_CHANGE=P373;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99796098_99796205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394018    GT:AD:DP:GQ:PL    0/1:46,52:98:99:1112,0,1409
7    99800239    rs138556948    A    T    1670.71    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.517;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6609;MQ=59.8;MQ0=0;MQRankSum=-1.297;QD=14.53;ReadPosRankSum=-1.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476057    GT:AD:DP:GQ:PL    0/1:55,60:115:99:1701,0,1768
7    99802812    rs2246713    G    C    1308.67    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4173;MQ=59.1;MQ0=0;MQRankSum=-0.522;QD=10.55;ReadPosRankSum=0.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476057    GT:AD:DP:GQ:PL    0/1:74,49:124:99:1339,0,2301
7    99811204    rs1623264    G    C    243.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436886    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:277,21,0
7    99811313    rs1624099    G    A    230.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.06;MQ0=0;MQRankSum=-0.537;QD=11.51;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436886    GT:AD:DP:GQ:PL    0/1:12,8:20:99:260,0,360
7    99811464    rs1727130    C    G    1531.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=35.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436886    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1565,117,0
7    99811836    rs1052482    A    T    117.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.89;MQ0=1;QD=19.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436886    GT:AD:DP:GQ:PL    1/1:1,5:6:12.04:150,12,0
7    99816179    rs1727142    T    C    700.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.05;MQ0=1;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317296    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:734,57,0
7    99816256    rs1727143    C    A    224.84    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=1.178;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.51;MQ0=1;MQRankSum=-0.074;QD=6.42;ReadPosRankSum=0.515;SNPEFF_AMINO_ACID_CHANGE=P250Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99816240_99816296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379577    GT:AD:DP:GQ:PL    0/1:23,12:35:99:255,0,616
7    99816272    rs1636986    A    G    737.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.31;MQ0=1;QD=23.79;SNPEFF_AMINO_ACID_CHANGE=S255;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99816240_99816296;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379577    GT:AD:DP:GQ:PL    1/1:0,31:31:63.17:770,63,0
7    99816275    rs1636987    G    C    734.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.4;MQ0=1;QD=25.33;SNPEFF_AMINO_ACID_CHANGE=P256;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99816240_99816296;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379577    GT:AD:DP:GQ:PL    1/1:0,29:29:60.19:768,60,0
7    99816437    rs1636988    G    A    128.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=25.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317296    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
7    99818137    rs2906646    G    A    512.80    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.854;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=1.668;QD=19.72;ReadPosRankSum=1.149;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471803    GT:AD:DP:GQ:PL    0/1:4,22:26:99:543,0,101
7    99818927    rs705867    C    T    68.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.8;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471803    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:99,0,69
7    99821381    rs858508    C    G    2045.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.28;MQ0=0;QD=33.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317271    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2078,168,0
7    99821470    rs858509    A    G    1652.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.52;MQ=48.55;MQ0=0;QD=16.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317271    GT:AD:DP:GQ:PL    1/1:0,97:100:99:1685,144,0
7    99821685    rs863450    C    T    1388.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.95;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=S77;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99821505_99821698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436886    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1422,111,0
7    99821725    rs117078557    T    G    451.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.93;MQ0=0;MQRankSum=-0.708;QD=18.81;ReadPosRankSum=-0.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRIG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317271    GT:AD:DP:GQ:PL    0/1:6,18:24:99:481,0,116
7    99831168    rs35887778    T    C    1062.17    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.49;DB;DP=77;Dels=0.0;FS=1.369;HRun=0;HaplotypeScore=3.7298;MQ=52.21;MQ0=1;MQRankSum=-2.541;QD=13.79;ReadPosRankSum=0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436886    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1092,0,931
7    99869678    rs9692044    G    C    48.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=58.79;MQ0=0;MQRankSum=0.851;QD=4.07;ReadPosRankSum=-0.336;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_99869461_99869855;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436886    GT:AD:DP:GQ:PL    0/1:7,5:12:78.84:79,0,172
7    99905325    rs111312383    C    T    158.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.467;QD=13.18;ReadPosRankSum=-1.073;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_99905325_99905614;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332397    GT:AD:DP:GQ:PL    0/1:6,6:12:99:188,0,214
7    99905458    rs146873825    G    A    748.82    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.97;MQ0=0;MQRankSum=0.236;QD=14.13;ReadPosRankSum=1.576;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_99905325_99905614;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332397    GT:AD:DP:GQ:PL    0/1:28,25:53:99:779,0,825
7    99905475    rs28680963    C    G    863.83    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.433;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.94;MQ0=0;MQRankSum=-0.33;QD=13.09;ReadPosRankSum=2.267;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_99905325_99905614;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332397    GT:AD:DP:GQ:PL    0/1:35,30:66:99:894,0,1019
7    99905684    rs28401739    A    G    615.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.351;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8614;MQ=51.3;MQ0=0;MQRankSum=0.143;QD=10.26;ReadPosRankSum=-1.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332397    GT:AD:DP:GQ:PL    0/1:36,24:60:99:646,0,1141
7    99916348    rs112602817    CT    C    91.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DB;DP=18;FS=0.0;HRun=15;HaplotypeScore=113.0153;IndelType=D;MQ=44.66;MQ0=0;MQRankSum=0.747;QD=4.79;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332397    GT:AD:DP:GQ:PL    1/1:10,9:18:19.80:133,20,0
7    99917416    rs112622797    G    A    2498.56    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.996;DB;DP=169;Dels=0.0;FS=2.021;HRun=0;HaplotypeScore=3.4867;MQ=56.0;MQ0=0;MQRankSum=1.967;QD=14.78;ReadPosRankSum=0.292;SNPEFF_AMINO_ACID_CHANGE=P148;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99917188_99917431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437326    GT:AD:DP:GQ:PL    0/1:88,81:169:99:2529,0,2478
7    99926308    rs117787328    T    C    109.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.201;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.27;MQ0=0;MQRankSum=-3.419;QD=6.07;ReadPosRankSum=-0.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447708    GT:AD:DP:GQ:PL    0/1:12,6:18:99:139,0,425
7    99926522    rs1059129    A    G    2269.82    PASS    AB=0.445;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.724;DB;DP=173;Dels=0.0;FS=2.862;HRun=0;HaplotypeScore=0.5784;MQ=51.39;MQ0=3;MQRankSum=-2.651;QD=13.12;ReadPosRankSum=-0.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447708    GT:AD:DP:GQ:PL    0/1:77,96:173:99:2300,0,2362
7    99926811    rs150919431    C    T    36.66    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.98;MQ0=0;MQRankSum=-2.054;QD=4.07;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PMS2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447708    GT:AD:DP:GQ:PL    0/1:3,6:9:66.65:67,0,95
7    99934008    rs7786844    T    G    83.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.02;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310771    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
7    99936427    rs3991564    T    C    1794.05    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=164;Dels=0.0;FS=5.676;HRun=0;HaplotypeScore=0.9159;MQ=49.8;MQ0=2;MQRankSum=-7.247;QD=10.94;ReadPosRankSum=1.347;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470714    GT:AD:DP:GQ:PL    0/1:86,77:164:99:1824,0,2546
7    99950508    rs7799932    G    C    118.57    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.64;MQ0=0;MQRankSum=0.742;QD=16.94;ReadPosRankSum=-0.742;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_99950384_99950537;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419749    GT:AD:DP:GQ:PL    0/1:1,6:7:24.27:149,0,24
7    99954393    rs6946768    G    A    352.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.33;MQ0=0;MQRankSum=-1.334;QD=12.58;ReadPosRankSum=-1.14;SNPEFF_AMINO_ACID_CHANGE=R57Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99954201_99954455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413850    GT:AD:DP:GQ:PL    0/1:14,14:28:99:382,0,312
7    99954457    rs41280971    G    T    314.36    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.269;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.99;MQ0=0;MQRankSum=0.801;QD=13.67;ReadPosRankSum=-0.868;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000413850    GT:AD:DP:GQ:PL    0/1:10,13:23:99:344,0,239
7    99955866    rs61735533    G    A    984.85    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=69;Dels=0.0;FS=5.547;HRun=0;HaplotypeScore=1.581;MQ=58.31;MQ0=0;MQRankSum=-0.718;QD=14.27;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=A103T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99955843_99955989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448382    GT:AD:DP:GQ:PL    0/1:29,40:69:99:1015,0,681
7    99956893    rs11761426    A    T    463.96    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.411;DB;DP=38;Dels=0.0;FS=6.032;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.617;QD=12.21;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419749    GT:AD:DP:GQ:PL    0/1:21,17:38:99:494,0,680
7    99957128    rs5886120    GCCT    G    315.91    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.597;DB;DP=35;FS=6.614;HRun=0;HaplotypeScore=134.8087;IndelType=D;MQ=58.0;MQ0=0;MQRankSum=-0.128;QD=9.03;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=P139-;SNPEFF_CODON_CHANGE=cct/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_7_99956960_99957160;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444874    GT:AD:DP:GQ:PL    0/1:25,10:35:99:355,0,1497
7    99964661    rs11769057    A    G    208.87    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=6.74;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310771    GT:AD:DP:GQ:PL    0/1:21,10:31:99:239,0,624
7    99964789    rs11765869    T    G    391.64    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=32;Dels=0.0;FS=3.873;HRun=2;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=0.138;QD=12.24;ReadPosRankSum=-0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PILRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310771    GT:AD:DP:GQ:PL    0/1:17,15:32:99:422,0,517
7    99971313    rs2405442    T    C    1933.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99971068_99971343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PILRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000198536    GT:AD:DP:GQ:PL    1/1:1,60:61:99:1967,159,0
7    99971834    rs1859788    A    G    3032.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=43.57;MQ0=5;QD=27.32;SNPEFF_AMINO_ACID_CHANGE=R78G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_99971667_99972056;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PILRA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000198536    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3066,256,0
7    99972122    rs7792525    A    G    250.21    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=-0.433;QD=14.72;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PILRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198536    GT:AD:DP:GQ:PL    0/1:8,9:17:99:280,0,243
7    99987805    rs7783550    C    T    74.69    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=8.3;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PILRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198536    GT:AD:DP:GQ:PL    0/1:4,5:9:99:105,0,141
7    99998607    rs11769886    G    A    284.06    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.34;QD=17.75;ReadPosRankSum=-2.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PILRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198536    GT:AD:DP:GQ:PL    0/1:5,11:16:99:314,0,142
7    100000274    rs35111986    C    A    1075.96    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.668;QD=15.37;ReadPosRankSum=0.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PILRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198536    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1106,0,1078
7    100002772    rs76913697    A    G    486.82    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.179;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.285;QD=16.79;ReadPosRankSum=-0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005071.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449355    GT:AD:DP:GQ:PL    0/1:13,16:29:99:517,0,424
7    100004446    rs1476679    C    T    939.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005071.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449355    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:972,72,0
7    100006493    rs68116612    G    A    116.05    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.21;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005071.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449355    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:146,0,27
7    100013457    rs5015756    T    C    600.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=30.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZCWPW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464510    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:634,48,0
7    100014846    rs73161762    C    T    458.76    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=3.199;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.594;QD=17.64;ReadPosRankSum=-0.142;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZCWPW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464510    GT:AD:DP:GQ:PL    0/1:9,17:26:99:489,0,227
7    100016844    rs11763414    C    G    675.43    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.99;DB;DP=48;Dels=0.0;FS=3.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.5;QD=14.07;ReadPosRankSum=-1.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZCWPW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324725    GT:AD:DP:GQ:PL    0/1:23,25:48:99:705,0,740
7    100017454    rs7783159    G    A    617.81    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.716;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.672;QD=13.14;ReadPosRankSum=-1.226;SNPEFF_AMINO_ACID_CHANGE=Y27;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100017253_100017506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZCWPW1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360951    GT:AD:DP:GQ:PL    0/1:25,22:47:99:648,0,745
7    100028187    rs6975729    C    T    693.95    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=76;Dels=0.0;FS=10.851;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.316;QD=9.13;ReadPosRankSum=0.627;SNPEFF_AMINO_ACID_CHANGE=P182;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100027254_100029312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MEPCE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310512    GT:AD:DP:GQ:PL    0/1:47,29:76:99:724,0,1455
7    100028484    rs6962151    T    C    987.22    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=94;Dels=0.0;FS=2.165;HRun=1;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;MQRankSum=-0.204;QD=10.5;ReadPosRankSum=-0.812;SNPEFF_AMINO_ACID_CHANGE=S281;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100027254_100029312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MEPCE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310512    GT:AD:DP:GQ:PL    0/1:54,40:94:99:1017,0,1586
7    100054637    rs150726853    GT    G    173.73    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=13;FS=2.522;HRun=1;HaplotypeScore=36.5991;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=0.66;QD=13.36;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332375    GT:AD:DP:GQ:PL    0/1:7,6:13:99:213,0,297
7    100064719    rs7806537    A    G    1158.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=29.71;SNPEFF_AMINO_ACID_CHANGE=L112;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100064161_100064791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSC22D4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393991    GT:AD:DP:GQ:PL    1/1:1,38:39:87.28:1192,87,0
7    100065443    rs7811142    A    T    92.24    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=18.45;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSC22D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300181    GT:AD:DP:GQ:PL    0/1:1,4:5:26.74:122,0,27
7    100072031    rs7809801    T    C    263.39    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.07;MQ0=0;MQRankSum=-0.245;QD=10.54;ReadPosRankSum=0.299;SNPEFF_AMINO_ACID_CHANGE=P265;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100071897_100072063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSC22D4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300181    GT:AD:DP:GQ:PL    0/1:13,12:25:99:293,0,420
7    100083078    rs67040465    G    A    38.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300179    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:68,0,32
7    100091215    rs73405353    G    A    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300179    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,71
7    100091795    rs12539172    T    C    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489641    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
7    100147959    .    T    G    86.48    HaplotypeScoreFilter13;QDFilter2    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.71;DP=100;Dels=0.01;FS=8.173;HRun=2;HaplotypeScore=16.4292;MQ=45.86;MQ0=0;MQRankSum=-4.724;QD=0.86;ReadPosRankSum=4.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AGFG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262935    GT:AD:DP:GQ:PL    0/1:39,61:100:99:116,0,1102
7    100154079    rs6651109    A    T    245.47    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.144;QD=14.44;ReadPosRankSum=-0.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AGFG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477022    GT:AD:DP:GQ:PL    0/1:8,9:17:99:275,0,282
7    100159567    rs2734897    A    G    124.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AGFG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262935    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
7    100160264    rs17855473    T    C    302.89    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=27;Dels=0.0;FS=10.209;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=1.312;QD=11.22;ReadPosRankSum=0.746;SNPEFF_AMINO_ACID_CHANGE=M349T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100160217_100160305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AGFG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300176    GT:AD:DP:GQ:PL    0/1:13,14:27:99:333,0,384
7    100173481    rs2075668    A    G    625.82    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.88;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=59.48;MQ0=0;MQRankSum=0.117;QD=14.22;ReadPosRankSum=0.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487697    GT:AD:DP:GQ:PL    0/1:23,21:44:99:656,0,833
7    100173750    rs76022902    G    A    94.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=10.53;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487697    GT:AD:DP:GQ:PL    0/1:5,4:9:99:125,0,185
7    100174876    rs142550780    C    T    116.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.573;QD=12.95;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRCH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470184    GT:AD:DP:GQ:PL    0/1:3,6:9:87.28:147,0,87
7    100175473    rs909152    T    C    1426.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=G337;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100175445_100175535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRCH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310300    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1459,114,0
7    100199961    .    A    C    72.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.57;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241071    GT:AD:DP:GQ:PL    0/1:2,3:5:58:103,0,58
7    100226665    rs4548095    C    T    31.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.98;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473571    GT:AD:DP:GQ:PL    0/1:2,2:4:61.92:62,0,71
7    100240771    rs1052897    A    T    454.87    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.142;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.274;QD=17.5;ReadPosRankSum=0.085;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487125    GT:AD:DP:GQ:PL    0/1:10,16:26:99:485,0,261
7    100280896    rs221793    A    C    1121.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIGYF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464111    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1154,93,0
7    100281768    rs221794    T    C    193.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=15;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.9665;MQ=55.21;MQ0=0;MQRankSum=1.333;QD=12.89;ReadPosRankSum=0.267;SNPEFF_AMINO_ACID_CHANGE=P300;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100281643_100281780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIGYF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539430    GT:AD:DP:GQ:PL    0/1:5,10:15:99:223,0,138
7    100283261    rs221795    C    T    44.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.73;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIGYF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275732    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:75,6,0
7    100284510    rs67224522    TG    T    581.10    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=2.889;DB;DP=49;FS=4.572;HRun=7;HaplotypeScore=121.5387;IndelType=D;MQ=60.19;MQ0=0;MQRankSum=0.132;QD=11.86;ReadPosRankSum=-0.816;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIGYF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275732    GT:AD:DP:GQ:PL    0/1:24,25:49:99:620,0,654
7    100284913    rs221796    C    G    446.86    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.24;DB;DP=44;Dels=0.0;FS=2.258;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=10.16;ReadPosRankSum=-1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIGYF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275732    GT:AD:DP:GQ:PL    0/1:21,23:44:99:477,0,707
7    100285974    rs221797    A    C    99.30    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.03;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIGYF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539430    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,169
7    100333192    rs112964818    G    GA    67.01    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=11;FS=0.0;HRun=7;HaplotypeScore=56.2515;IndelType=I;MQ=56.64;MQ0=0;MQRankSum=0.103;QD=6.09;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:6,5:11:99:106,0,115
7    100334556    rs75834296    G    C    148.06    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.51;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=L126;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100334432_100334703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:3,5:8:95.74:178,0,96
7    100348327    rs17162410    C    T    910.93    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=1.198;DB;DP=53;Dels=0.0;FS=1.079;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.069;QD=17.19;ReadPosRankSum=0.7;SNPEFF_AMINO_ACID_CHANGE=C443;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100348248_100348519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:24,29:53:99:941,0,657
7    100348940    rs2075669    T    C    115.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=11.5;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:5,5:10:99:145,0,166
7    100349844    .    T    G    3044.67    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.413;DP=250;DS;Dels=0.0;FS=10.415;HRun=0;HaplotypeScore=5.6474;MQ=59.54;MQ0=0;MQRankSum=0.321;QD=12.18;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=S706A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100349335_100350852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:131,117:250:99:3075,0,3908
7    100353125    rs6971700    A    G    595.88    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.606;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=58.81;MQ0=0;MQRankSum=0.754;QD=15.28;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:16,23:39:99:626,0,550
7    100358259    rs76926298    C    T    178.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=19.88;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:3,6:9:99:209,0,100
7    100361391    rs3215395    G    GC    629.61    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.305;DB;DP=35;FS=0.0;HRun=1;HaplotypeScore=100.6369;IndelType=I;MQ=60.31;MQ0=0;MQRankSum=0.831;QD=17.99;ReadPosRankSum=0.982;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:17,18:35:99:669,0,469
7    100361580    rs3215394    TG    T    1310.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.661;DB;DP=80;FS=3.214;HRun=2;HaplotypeScore=242.0219;IndelType=D;MQ=59.19;MQ0=0;MQRankSum=1.189;QD=16.38;ReadPosRankSum=1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1349,0,1336
7    100361675    rs2293767    G    A    1576.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.904;DB;DP=99;Dels=0.0;FS=8.521;HRun=0;HaplotypeScore=0.9983;MQ=59.3;MQ0=0;MQRankSum=-0.637;QD=15.93;ReadPosRankSum=-0.459;SNPEFF_AMINO_ACID_CHANGE=A1375T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100361650_100361819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:44,55:99:99:1607,0,1039
7    100364105    rs34208299    CA    C    92.71    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;FS=0.0;HRun=9;HaplotypeScore=26.5053;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=8.43;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:5,6:11:99:132,0,140
7    100364552    rs7801875    G    A    372.08    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.941;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=12.0;ReadPosRankSum=-0.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:18,13:31:99:402,0,604
7    100365542    rs183014219    C    A    850.58    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.224;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=58.52;MQ0=0;MQRankSum=-0.446;QD=14.18;ReadPosRankSum=0.654;SNPEFF_AMINO_ACID_CHANGE=T1650K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100365454_100365634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:33,27:60:99:881,0,958
7    100366203    rs10232130    C    G    287.54    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=30;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.138;QD=9.58;ReadPosRankSum=1.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:16,14:30:99:318,0,508
7    100366284    rs10247980    T    C    296.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=28;Dels=0.0;FS=5.787;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.416;QD=10.58;ReadPosRankSum=2.298;SNPEFF_AMINO_ACID_CHANGE=L1698P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100366233_100366344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:16,12:28:99:326,0,434
7    100371100    rs2734880    C    A    1197.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.18;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=A1873E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100370908_100371116;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1231,93,0
7    100371114    rs314298    C    T    874.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=28.22;SNPEFF_AMINO_ACID_CHANGE=P1878S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100370908_100371116;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    1/1:0,30:31:72.21:908,72,0
7    100371417    rs12673041    G    A    388    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.038;DB;DP=25;Dels=0.0;FS=9.034;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.63;QD=15.52;ReadPosRankSum=-1.068;SNPEFF_AMINO_ACID_CHANGE=C1903Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100371344_100371475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:11,14:25:99:418,0,349
7    100371473    rs314299    C    T    451.35    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.13;DB;DP=23;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=1.001;QD=19.62;ReadPosRankSum=0.355;SNPEFF_AMINO_ACID_CHANGE=R1922C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100371344_100371475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:8,15:23:99:481,0,185
7    100374087    rs314300    A    G    808.34    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.753;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5778;MQ=60.0;MQ0=0;MQRankSum=1.237;QD=14.43;ReadPosRankSum=-0.194;SNPEFF_AMINO_ACID_CHANGE=N2072S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100374062_100374186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:27,29:56:99:838,0,762
7    100376978    rs314303    T    C    479.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=36.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:512,39,0
7    100377138    .    A    AGGGC    718.13    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.458;DP=33;FS=1.744;HRun=0;HaplotypeScore=152.1413;IndelType=I;MQ=56.55;MQ0=0;MQRankSum=-0.996;QD=21.76;ReadPosRankSum=-0.819;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_100377068_100377372;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:23,10:33:99:757,0,821
7    100383605    rs160602    T    A    514.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=14.28;ReadPosRankSum=0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:18,18:36:99:544,0,635
7    100383750    rs59861703    T    C    1212.16    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=106;Dels=0.0;FS=6.393;HRun=0;HaplotypeScore=1.865;MQ=59.78;MQ0=0;MQRankSum=0.315;QD=11.44;ReadPosRankSum=-0.162;SNPEFF_AMINO_ACID_CHANGE=N2321;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100383619_100383763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:63,43:106:99:1242,0,1976
7    100383852    rs60918541    C    T    372.88    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.09;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.418;QD=9.81;ReadPosRankSum=-2.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:23,15:38:99:403,0,810
7    100385351    rs34335606    T    G    55.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.96;MQ0=0;MQRankSum=1.231;QD=11.03;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:2,3:5:60.16:85,0,60
7    100385561    rs72364644    GGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT    G    928.71    PASS    AB=0.933;AC=1;AF=0.50;AN=2;BaseQRankSum=3.664;DB;DP=70;FS=4.358;HRun=0;HaplotypeScore=1643.4652;IndelType=D;MQ=54.65;MQ0=0;MQRankSum=-3.664;QD=13.27;ReadPosRankSum=0.481;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_100385511_100385758;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:65,5:70:99:968,0,22986
7    100385714    rs117714489    G    A    1038.95    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=0.514;DB;DP=53;Dels=0.0;FS=2.643;HRun=0;HaplotypeScore=0.0;MQ=56.42;MQ0=0;MQRankSum=2.103;QD=19.6;ReadPosRankSum=0.46;SNPEFF_AMINO_ACID_CHANGE=V2394I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100385511_100385758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:22,31:53:99:1069,0,555
7    100386710    rs73411168    T    C    149.01    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.56;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    0/1:4,5:9:99:179,0,136
7    100386900    rs191137    T    C    2231.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=W2429R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100386840_100386969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2264,175,0
7    100391581    rs314339    T    C    474.08    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.844;DB;DP=37;Dels=0.0;FS=17.504;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.047;QD=12.81;ReadPosRankSum=0.649;SNPEFF_AMINO_ACID_CHANGE=S2663;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100391442_100391640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542585    GT:AD:DP:GQ:PL    0/1:19,18:37:99:504,0,604
7    100391644    rs314340    T    C    875.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:909,72,0
7    100393141    rs314343    C    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538115    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    100395003    rs314344    G    C    257.32    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.352;DB;DP=42;Dels=0.0;FS=3.344;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.688;QD=6.13;ReadPosRankSum=0.587;SNPEFF_AMINO_ACID_CHANGE=G1133A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100394985_100395087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ZAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546213    GT:AD:DP:GQ:PL    0/1:27,15:42:99:287,0,668
7    100401270    rs314348    T    G    205.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467515    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
7    100410657    rs314358    A    G    757.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=70;Dels=0.0;FS=3.654;HRun=1;HaplotypeScore=0.734;MQ=59.67;MQ0=0;MQRankSum=-1.839;QD=10.82;ReadPosRankSum=1.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477446    GT:AD:DP:GQ:PL    0/1:42,28:70:99:787,0,1314
7    100411278    rs314359    T    C    3072.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=5.263;DB;DP=247;DS;Dels=0.0;FS=0.489;HRun=2;HaplotypeScore=1.9965;MQ=59.36;MQ0=0;MQRankSum=1.237;QD=12.44;ReadPosRankSum=0.474;SNPEFF_AMINO_ACID_CHANGE=G584;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100411274_100411338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358173    GT:AD:DP:GQ:PL    0/1:141,106:247:99:3103,0,4274
7    100416250    rs144173    A    G    232.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.38;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=S438;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100416142_100416266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358173    GT:AD:DP:GQ:PL    0/1:4,8:12:95.65:263,0,96
7    100416332    rs314364    T    A    183.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358173    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:217,21,0
7    100416354    rs314365    G    C    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358173    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
7    100417011    rs314367    C    A    168.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358173    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
7    100451732    rs12535629    C    T    130.89    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=18;Dels=0.0;FS=2.058;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.996;QD=7.27;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275729    GT:AD:DP:GQ:PL    0/1:11,7:18:99:161,0,365
7    100456611    rs314374    G    C    1723.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.02;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.48;MQ0=0;QD=35.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434158    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1757,135,0
7    100457344    rs314375    G    A    281.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434158    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
7    100457356    rs314376    A    G    223.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434158    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:256,21,0
7    100458049    rs314377    A    G    37.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=12.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434158    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:69,6,0
7    100458795    rs314378    T    C    1496.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.54;MQ0=0;QD=29.92;SNPEFF_AMINO_ACID_CHANGE=A154;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100458760_100458802;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418037    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1529,117,0
7    100460331    rs72615164    G    A    402.26    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=3.197;DB;DP=37;Dels=0.0;FS=8.455;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.448;QD=10.87;ReadPosRankSum=1.066;SNPEFF_AMINO_ACID_CHANGE=P206;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100460303_100460449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539308    GT:AD:DP:GQ:PL    0/1:24,13:37:99:432,0,698
7    100467975    rs10627414    C    CCT    834.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=43.107;IndelType=I;MQ=59.29;MQ0=0;QD=52.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275729    GT:AD:DP:GQ:PL    1/1:0,16:15:45.15:877,45,0
7    100468103    rs7800241    G    A    323.70    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=23;Dels=0.0;FS=6.313;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=1.051;QD=14.07;ReadPosRankSum=1.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354161    GT:AD:DP:GQ:PL    0/1:11,12:23:99:354,0,332
7    100468284    rs1054391    A    G    736.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.74;SNPEFF_AMINO_ACID_CHANGE=V306;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100468196_100468365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000200457    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:769,57,0
7    100468398    rs7783543    T    C    51.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC12A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354161    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
7    100471121    rs12538287    C    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200457    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
7    100481658    rs11310439    GT    G    1031.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=4;HaplotypeScore=113.1348;IndelType=D;MQ=60.69;MQ0=0;QD=33.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SRRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431645    GT:AD:DP:GQ:PL    1/1:0,31:31:90.27:1073,90,0
7    100482026    rs15624    T    C    718.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=L265;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100481989_100482173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SRRT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347433    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:752,57,0
7    100482526    rs6942607    C    G    2658.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SRRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431645    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2691,205,0
7    100483731    rs12672665    A    G    195.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241069    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:228,18,0
7    100484917    rs6954151    C    T    2092.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241069    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2126,166,0
7    100486088    rs3087504    C    T    1606.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241069    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1640,126,0
7    100486656    rs13241786    T    G    2175.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=V79;SNPEFF_CODON_CHANGE=gtA/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100486346_100487339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UFSP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388761    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2209,172,0
7    100549440    .    C    T    1270.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.973;DP=98;Dels=0.0;FS=1.249;HRun=0;HaplotypeScore=2.7881;MQ=57.36;MQ0=0;MQRankSum=1.08;QD=12.96;ReadPosRankSum=-0.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:56,42:98:99:1300,0,1747
7    100549573    rs73163748    G    T    180.29    FSFilter60;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.724;DB;DP=209;Dels=0.0;FS=70.368;HRun=0;HaplotypeScore=3.3829;MQ=56.51;MQ0=0;MQRankSum=-6.364;QD=0.86;ReadPosRankSum=-0.704;SNPEFF_AMINO_ACID_CHANGE=D52Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:174,35:209:99:210,0,5418
7    100549583    rs73163749    G    A    431.87    FSFilter60;SnpCluster    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.882;DB;DP=199;Dels=0.0;FS=64.215;HRun=0;HaplotypeScore=3.3125;MQ=55.46;MQ0=0;MQRankSum=-8.046;QD=2.17;ReadPosRankSum=-0.916;SNPEFF_AMINO_ACID_CHANGE=G55E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:156,42:199:99:462,0,5174
7    100549592    rs73163750    T    A    515.61    FSFilter60;SnpCluster    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.272;DB;DP=202;Dels=0.0;FS=71.621;HRun=0;HaplotypeScore=4.1664;MQ=55.41;MQ0=0;MQRankSum=-5.909;QD=2.55;ReadPosRankSum=0.669;SNPEFF_AMINO_ACID_CHANGE=L58H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:155,47:202:99:546,0,5255
7    100549593    rs74375072    T    A    523.95    FSFilter60;SnpCluster    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=3.631;DB;DP=200;Dels=0.0;FS=67.524;HRun=0;HaplotypeScore=4.1664;MQ=55.36;MQ0=0;MQRankSum=-7.085;QD=2.62;ReadPosRankSum=0.815;SNPEFF_AMINO_ACID_CHANGE=L58;SNPEFF_CODON_CHANGE=ctT/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:153,47:200:99:554,0,5106
7    100549650    rs73398716    A    G    1867.08    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.79;DB;DP=250;DS;Dels=0.0;FS=38.449;HRun=0;HaplotypeScore=0.5784;MQ=57.17;MQ0=0;MQRankSum=-3.938;QD=7.47;ReadPosRankSum=0.605;SNPEFF_AMINO_ACID_CHANGE=T77;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:163,86:250:99:1897,0,5280
7    100549697    rs77036391    A    G    2452.18    PASS    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=250;DS;Dels=0.0;FS=3.831;HRun=0;HaplotypeScore=3.9994;MQ=57.83;MQ0=0;MQRankSum=0.902;QD=9.81;ReadPosRankSum=-1.839;SNPEFF_AMINO_ACID_CHANGE=N93S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:154,96:250:99:2482,0,4778
7    100549703    rs78164286    C    T    2350.73    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.549;DB;DP=250;DS;Dels=0.0;FS=5.38;HRun=0;HaplotypeScore=2.4476;MQ=57.64;MQ0=0;MQRankSum=-0.451;QD=9.4;ReadPosRankSum=-1.592;SNPEFF_AMINO_ACID_CHANGE=P95L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:148,101:250:99:2381,0,4790
7    100549787    rs73714227    C    T    2894.59    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.16;DB;DP=248;DS;Dels=0.0;FS=0.514;HRun=2;HaplotypeScore=4.668;MQ=56.62;MQ0=0;MQRankSum=-1.673;QD=11.67;ReadPosRankSum=-0.392;SNPEFF_AMINO_ACID_CHANGE=S123L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:133,115:248:99:2925,0,4437
7    100549788    rs78113948    A    G    2899    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.345;DB;DP=247;DS;Dels=0.0;FS=0.516;HRun=1;HaplotypeScore=4.668;MQ=56.71;MQ0=0;MQRankSum=0.088;QD=11.74;ReadPosRankSum=-0.324;SNPEFF_AMINO_ACID_CHANGE=S123;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:133,114:247:99:2929,0,4561
7    100549840    rs75741102    C    T    269.68    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=168;DS;Dels=0.0;FS=14.836;HRun=0;HaplotypeScore=6.717;MQ=53.98;MQ0=0;MQRankSum=-0.566;QD=1.61;ReadPosRankSum=-0.132;SNPEFF_AMINO_ACID_CHANGE=P141S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:141,26:168:99:300,0,4550
7    100549873    rs74193966    G    A    1317.76    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=147;DS;Dels=0.0;FS=11.633;HRun=0;HaplotypeScore=5.4436;MQ=51.41;MQ0=0;MQRankSum=-6.419;QD=8.96;ReadPosRankSum=-1.142;SNPEFF_AMINO_ACID_CHANGE=A152T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:82,65:147:99:1348,0,2589
7    100549884    rs73163752    C    T    1098.20    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.685;DB;DP=142;DS;Dels=0.0;FS=8.37;HRun=1;HaplotypeScore=6.5527;MQ=50.12;MQ0=0;MQRankSum=-8.704;QD=7.73;ReadPosRankSum=-1.711;SNPEFF_AMINO_ACID_CHANGE=S155;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:82,60:142:99:1128,0,2567
7    100549894    rs78007565    T    C    737.99    SnpCluster    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.502;DB;DP=134;Dels=0.0;FS=7.224;HRun=2;HaplotypeScore=4.3854;MQ=50.74;MQ0=0;MQRankSum=-9.072;QD=5.51;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=S159P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:83,51:134:99:768,0,2517
7    100549896    rs79035545    G    C    702.60    SnpCluster    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.147;DB;DP=134;Dels=0.0;FS=4.713;HRun=1;HaplotypeScore=4.3854;MQ=50.74;MQ0=0;MQRankSum=-8.813;QD=5.24;ReadPosRankSum=-0.795;SNPEFF_AMINO_ACID_CHANGE=S159;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:85,49:134:99:733,0,2541
7    100549902    rs75991009    C    T    673.22    SnpCluster    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=4.145;DB;DP=142;Dels=0.0;FS=5.431;HRun=0;HaplotypeScore=2.4947;MQ=49.89;MQ0=0;MQRankSum=-9.326;QD=4.74;ReadPosRankSum=-2.048;SNPEFF_AMINO_ACID_CHANGE=P161;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:85,57:142:99:703,0,2535
7    100549914    rs73714228    G    A    723.82    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=142;Dels=0.0;FS=1.431;HRun=2;HaplotypeScore=0.8941;MQ=50.43;MQ0=0;MQRankSum=-8.79;QD=5.1;ReadPosRankSum=-2.395;SNPEFF_AMINO_ACID_CHANGE=K165;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:86,56:142:99:754,0,2776
7    100549935    rs73714229    T    G    903.23    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=5.371;DB;DP=146;Dels=0.0;FS=3.254;HRun=1;HaplotypeScore=1.6649;MQ=52.69;MQ0=0;MQRankSum=-6.101;QD=6.19;ReadPosRankSum=-1.699;SNPEFF_AMINO_ACID_CHANGE=S172R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:89,57:146:99:933,0,2739
7    100549942    rs73714230    T    C    964.99    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.39;DB;DP=134;Dels=0.0;FS=0.699;HRun=1;HaplotypeScore=1.4105;MQ=53.39;MQ0=0;MQRankSum=-5.554;QD=7.2;ReadPosRankSum=-0.878;SNPEFF_AMINO_ACID_CHANGE=S175P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:82,52:134:99:995,0,2654
7    100549979    rs73398717    C    T    1495.09    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.8;DB;DP=148;Dels=0.0;FS=3.285;HRun=0;HaplotypeScore=0.7887;MQ=54.63;MQ0=0;MQRankSum=-3.645;QD=10.1;ReadPosRankSum=1.621;SNPEFF_AMINO_ACID_CHANGE=T187I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:88,60:148:99:1525,0,2824
7    100550032    rs111723000    C    CCCT    3607.21    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=6.776;DB;DP=159;FS=5.738;HRun=0;HaplotypeScore=794.0197;IndelType=I;MQ=54.29;MQ0=0;MQRankSum=-4.699;QD=22.69;ReadPosRankSum=0.6;SNPEFF_AMINO_ACID_CHANGE=P205PS;SNPEFF_CODON_CHANGE=ccc/cCCTcc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:102,57:159:99:3607,0,3289
7    100550079    rs28379747    A    C    2347.61    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=205;Dels=0.0;FS=1.801;HRun=1;HaplotypeScore=3.3843;MQ=55.36;MQ0=0;MQRankSum=-3.741;QD=11.45;ReadPosRankSum=-0.707;SNPEFF_AMINO_ACID_CHANGE=S220;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:115,90:205:99:2378,0,3641
7    100550133    rs74197937    A    G    2665.37    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.473;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.83;MQ0=0;MQRankSum=-3.295;QD=10.66;ReadPosRankSum=-1.365;SNPEFF_AMINO_ACID_CHANGE=T238;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:137,111:250:99:2695,0,4357
7    100550138    rs73714233    C    T    2675.85    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=4.618;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;MQRankSum=-4.96;QD=10.7;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=T240M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:142,108:250:99:2706,0,4101
7    100550184    rs73714234    C    A    1851.02    HaplotypeScoreFilter13    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=2.615;DB;DP=228;DS;Dels=0.0;FS=29.088;HRun=1;HaplotypeScore=59.4216;MQ=54.33;MQ0=0;MQRankSum=-7.786;QD=8.12;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=S255;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:138,90:228:99:1881,0,4430
7    100550191    rs35523587    C    T    1362.72    HaplotypeScoreFilter13    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.231;DB;DP=225;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=63.6619;MQ=54.13;MQ0=0;MQRankSum=4.832;QD=6.06;ReadPosRankSum=-1.068;SNPEFF_AMINO_ACID_CHANGE=P258S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:164,61:225:99:1393,0,4751
7    100550203    rs75141335    T    A    1038.69    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.014;DB;DP=216;DS;Dels=0.0;FS=41.104;HRun=0;HaplotypeScore=7.4794;MQ=54.21;MQ0=0;MQRankSum=-7.553;QD=4.81;ReadPosRankSum=0.973;SNPEFF_AMINO_ACID_CHANGE=S262T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:142,72:216:99:1069,0,4851
7    100550205    rs77471356    A    C    1040    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.49;DB;DP=219;DS;Dels=0.0;FS=40.421;HRun=1;HaplotypeScore=5.6924;MQ=54.41;MQ0=0;MQRankSum=-8.366;QD=4.75;ReadPosRankSum=0.976;SNPEFF_AMINO_ACID_CHANGE=S262;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:147,71:219:99:1070,0,4957
7    100550245    rs66732041    G    A    506.11    FSFilter60;HaplotypeScoreFilter13    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.442;DB;DP=208;DS;Dels=0.0;FS=67.857;HRun=0;HaplotypeScore=30.2113;MQ=53.72;MQ0=0;MQRankSum=-8.517;QD=2.43;ReadPosRankSum=-3.174;SNPEFF_AMINO_ACID_CHANGE=A276T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:151,56:208:99:536,0,4341
7    100550252    rs67587735    A    G    387.92    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.732;DB;DP=201;DS;Dels=0.0;FS=62.28;HRun=1;HaplotypeScore=24.3576;MQ=53.67;MQ0=0;MQRankSum=-10.012;QD=1.93;ReadPosRankSum=-2.649;SNPEFF_AMINO_ACID_CHANGE=Q278R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100549481_100550424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:150,51:201:99:418,0,4780
7    100550648    .    C    CCG    71.24    QDFilter2    AB=0.915;AC=1;AF=0.50;AN=2;BaseQRankSum=5.332;DP=75;FS=49.721;HRun=0;HaplotypeScore=1843.3861;IndelType=I;MQ=34.7;MQ0=0;MQRankSum=-2.171;QD=0.95;ReadPosRankSum=2.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:68,7:75:99:110,0,2050
7    100550650    .    G    GA    39    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=4.991;DP=71;FS=62.488;HRun=1;HaplotypeScore=1805.9406;IndelType=I;MQ=33.87;MQ0=0;MQRankSum=-0.991;QD=0.55;ReadPosRankSum=1.955;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:59,12:71:78.03:78,0,1537
7    100550658    .    A    ATC    1201.43    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DP=70;FS=82.165;HRun=0;HaplotypeScore=2147.2139;IndelType=I;MQ=29.61;MQ0=0;MQRankSum=0.296;QD=17.16;ReadPosRankSum=3.559;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:38,32:70:99:1240,0,1072
7    100550662    .    AGT    A    777.82    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.413;DP=72;FS=98.018;HRun=0;HaplotypeScore=2285.6051;IndelType=D;MQ=29.34;MQ0=0;MQRankSum=-1.888;QD=10.8;ReadPosRankSum=3.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:40,32:72:99:817,0,1397
7    100550668    .    C    G    64.02    FSFilter60;HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.592;DP=82;Dels=0.0;FS=171.231;HRun=0;HaplotypeScore=45.7732;MQ=29.23;MQ0=0;MQRankSum=0.081;QD=0.78;ReadPosRankSum=-0.917;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:50,32:82:94.01:94,0,838
7    100550673    rs73398722    A    C    205.99    HaplotypeScoreFilter13;MQFilter40    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=0.706;DB;DP=90;Dels=0.0;FS=37.708;HRun=0;HaplotypeScore=34.7917;MQ=29.11;MQ0=0;MQRankSum=-0.422;QD=2.29;ReadPosRankSum=-0.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:36,53:90:99:236,0,732
7    100550674    .    T    TCC    942.19    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DP=96;FS=114.248;HRun=0;HaplotypeScore=2777.5571;IndelType=I;MQ=29.1;MQ0=0;MQRankSum=1.16;QD=9.81;ReadPosRankSum=3.706;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:64,32:96:99:981,0,2425
7    100550694    rs73398723    T    C    38.91    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=2.851;DB;DP=91;Dels=0.0;FS=42.662;HRun=1;HaplotypeScore=52.1313;MQ=30.92;MQ0=0;MQRankSum=-1.095;QD=0.43;ReadPosRankSum=2.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:52,37:91:68.90:69,0,1311
7    100550724    rs73398725    A    C    676.10    FSFilter60;HaplotypeScoreFilter13;MQFilter40    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=4.476;DB;DP=109;Dels=0.0;FS=79.639;HRun=0;HaplotypeScore=25.5204;MQ=30.99;MQ0=0;MQRankSum=-2.203;QD=6.2;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:62,47:109:99:706,0,1664
7    100550726    .    T    C    380.05    HaplotypeScoreFilter13;MQFilter40    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=6.965;DP=110;Dels=0.0;FS=48.831;HRun=1;HaplotypeScore=27.6043;MQ=30.97;MQ0=0;MQRankSum=0.045;QD=3.45;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:78,31:110:99:410,0,1953
7    100550735    .    C    T    270.08    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.613;DP=110;Dels=0.0;FS=52.601;HRun=2;HaplotypeScore=47.8588;MQ=30.97;MQ0=0;MQRankSum=-0.069;QD=2.46;ReadPosRankSum=-1.665;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:76,34:110:99:300,0,1963
7    100550737    rs66606045    T    A    2568.10    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=37.0269;MQ=30.97;MQ0=0;QD=23.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    1/1:1,109:110:99:2601,243,0
7    100550744    rs76608602    A    C    408.44    FSFilter60;HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=2.553;DB;DP=110;Dels=0.03;FS=80.518;HRun=0;HaplotypeScore=62.7788;MQ=30.92;MQ0=0;MQRankSum=-0.073;QD=3.61;ReadPosRankSum=-3.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:62,47:110:99:438,0,1677
7    100550745    rs74474011    T    C    397.63    FSFilter60;HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=5.331;DB;DP=109;Dels=0.03;FS=78.584;HRun=0;HaplotypeScore=64.7754;MQ=30.92;MQ0=0;MQRankSum=-1.253;QD=3.52;ReadPosRankSum=-2.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:62,46:109:99:428,0,1688
7    100550766    rs28654698    A    C    1438.23    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.637;DB;DP=98;Dels=0.0;FS=9.389;HRun=0;HaplotypeScore=34.6035;MQ=30.93;MQ0=0;MQRankSum=2.223;QD=14.68;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    1/1:7,51:98:77.49:1471,77,0
7    100550767    .    T    TA    972.42    PASS    AB=0.943;AC=1;AF=0.50;AN=2;BaseQRankSum=7.718;DP=100;FS=76.834;HRun=1;HaplotypeScore=2470.5883;IndelType=I;MQ=30.63;MQ0=0;MQRankSum=-1.586;QD=9.72;ReadPosRankSum=0.918;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:94,6:100:99:1011,0,1788
7    100550777    rs28617762    T    C    127.58    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=0.115;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=75.4949;MQ=30.08;MQ0=0;MQRankSum=0.685;QD=1.4;ReadPosRankSum=-1.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:73,17:91:99:158,0,1664
7    100550786    rs79714278    T    C    1003.09    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=1.987;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=20.6606;MQ=29.73;MQ0=0;MQRankSum=0.792;QD=11.94;ReadPosRankSum=-0.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:32,51:84:99:1033,0,535
7    100550787    rs28530520    G    A    548.92    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=3.026;DB;DP=84;Dels=0.0;FS=2.08;HRun=1;HaplotypeScore=20.6606;MQ=29.73;MQ0=0;MQRankSum=0.255;QD=6.53;ReadPosRankSum=1.494;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:50,34:84:99:579,0,1053
7    100550799    rs28705341    G    C    1008.37    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.918;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=63.6918;MQ=33.81;MQ0=0;MQRankSum=2.26;QD=10.61;ReadPosRankSum=-1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    1/1:3,64:95:61.87:1041,62,0
7    100550800    rs28420633    G    A    623.54    HaplotypeScoreFilter13;MQFilter40    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.048;DB;DP=97;Dels=0.0;FS=0.857;HRun=1;HaplotypeScore=66.6867;MQ=34.14;MQ0=0;MQRankSum=2.902;QD=6.43;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:50,47:97:99:654,0,670
7    100550838    .    G    A    180.39    HaplotypeScoreFilter13;QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=2.944;DP=157;Dels=0.0;FS=1.911;HRun=1;HaplotypeScore=33.2762;MQ=41.64;MQ0=0;MQRankSum=-3.619;QD=1.15;ReadPosRankSum=0.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:126,30:157:99:210,0,3219
7    100550869    rs62483692    G    A    123.01    HaplotypeScoreFilter13;QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.272;DB;DP=213;Dels=0.0;FS=4.255;HRun=0;HaplotypeScore=97.8886;MQ=47.33;MQ0=0;MQRankSum=-6.2;QD=0.58;ReadPosRankSum=1.559;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:172,29:213:99:153,0,4661
7    100550873    rs74836112    G    C    154.61    HaplotypeScoreFilter13;QDFilter2    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=5.339;DB;DP=212;Dels=0.0;FS=27.669;HRun=1;HaplotypeScore=80.9322;MQ=48.08;MQ0=0;MQRankSum=-6.877;QD=0.73;ReadPosRankSum=2.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:176,36:212:99:185,0,4576
7    100550925    rs10953310    G    C    2329.49    HaplotypeScoreFilter13    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=2.494;DB;DP=221;Dels=0.0;FS=4.894;HRun=0;HaplotypeScore=18.8774;MQ=54.66;MQ0=0;MQRankSum=-0.461;QD=10.54;ReadPosRankSum=1.767;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:132,89:221:99:2359,0,3497
7    100551376    rs75808610    C    A    77.19    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=5.951;DB;DP=177;Dels=0.0;FS=29.688;HRun=1;HaplotypeScore=1.9963;MQ=56.16;MQ0=0;MQRankSum=-7.845;QD=0.44;ReadPosRankSum=-1.905;SNPEFF_AMINO_ACID_CHANGE=R43;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:153,24:177:99:107,0,4779
7    100551397    rs79748732    G    T    88.85    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=206;Dels=0.0;FS=42.129;HRun=1;HaplotypeScore=2.8237;MQ=55.89;MQ0=0;MQRankSum=-8.846;QD=0.43;ReadPosRankSum=-0.998;SNPEFF_AMINO_ACID_CHANGE=V50L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:174,31:206:99:119,0,5762
7    100551400    rs75496565    G    A    110.52    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=205;Dels=0.0;FS=38.229;HRun=0;HaplotypeScore=2.8237;MQ=55.86;MQ0=0;MQRankSum=-8.853;QD=0.54;ReadPosRankSum=-1.075;SNPEFF_AMINO_ACID_CHANGE=G51S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:174,31:205:99:141,0,5745
7    100551433    rs73398732    T    C    840.60    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.811;DB;DP=244;Dels=0.0;FS=52.658;HRun=1;HaplotypeScore=1.9977;MQ=54.09;MQ0=0;MQRankSum=-8.637;QD=3.45;ReadPosRankSum=-2.887;SNPEFF_AMINO_ACID_CHANGE=F62L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:183,61:244:99:871,0,5905
7    100551461    rs78826835    C    G    1086.38    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.84;DB;DP=237;DS;Dels=0.0;FS=24.747;HRun=0;HaplotypeScore=3.733;MQ=53.74;MQ0=0;MQRankSum=-7.55;QD=4.56;ReadPosRankSum=4.01;SNPEFF_AMINO_ACID_CHANGE=T71S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:171,66:237:99:1116,0,5615
7    100551471    rs78831742    T    C    1160.31    SnpCluster    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=2.368;DB;DP=249;DS;Dels=0.0;FS=6.942;HRun=1;HaplotypeScore=5.386;MQ=53.41;MQ0=0;MQRankSum=-8.641;QD=4.66;ReadPosRankSum=4.463;SNPEFF_AMINO_ACID_CHANGE=T74;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:177,72:249:99:1190,0,5651
7    100551473    rs79233494    G    C    1159.45    SnpCluster    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=5.962;DB;DP=248;DS;Dels=0.0;FS=8.411;HRun=1;HaplotypeScore=5.386;MQ=53.39;MQ0=0;MQRankSum=-9.105;QD=4.68;ReadPosRankSum=4.282;SNPEFF_AMINO_ACID_CHANGE=R75P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:177,71:248:99:1189,0,5148
7    100551476    rs74460367    C    T    1266.97    SnpCluster    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.617;DB;DP=249;DS;Dels=0.0;FS=14.714;HRun=0;HaplotypeScore=4.4281;MQ=52.87;MQ0=0;MQRankSum=-8.971;QD=5.09;ReadPosRankSum=3.298;SNPEFF_AMINO_ACID_CHANGE=T76I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:171,78:249:99:1297,0,5370
7    100551565    rs73163757    A    G    1666.69    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.345;DB;DP=244;DS;Dels=0.0;FS=1.722;HRun=0;HaplotypeScore=4.6551;MQ=52.72;MQ0=0;MQRankSum=-7.046;QD=6.83;ReadPosRankSum=4.753;SNPEFF_AMINO_ACID_CHANGE=M106V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:153,91:244:99:1697,0,5270
7    100551566    rs78538898    T    C    1627.45    PASS    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=244;DS;Dels=0.0;FS=0.518;HRun=0;HaplotypeScore=4.6551;MQ=52.75;MQ0=0;MQRankSum=-7.706;QD=6.64;ReadPosRankSum=4.584;SNPEFF_AMINO_ACID_CHANGE=M106T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:152,91:244:99:1657,0,5141
7    100551578    rs78584246    T    G    1931.41    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.302;DB;DP=246;DS;Dels=0.0;FS=3.217;HRun=0;HaplotypeScore=7.451;MQ=52.95;MQ0=0;MQRankSum=-8.217;QD=7.85;ReadPosRankSum=3.365;SNPEFF_AMINO_ACID_CHANGE=I110S;SNPEFF_CODON_CHANGE=aTt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:158,87:246:99:1961,0,5315
7    100551626    rs73714238    T    C    502.17    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.886;DB;DP=242;DS;Dels=0.0;FS=28.566;HRun=0;HaplotypeScore=8.0085;MQ=54.9;MQ0=0;MQRankSum=-7.944;QD=2.08;ReadPosRankSum=-4.264;SNPEFF_AMINO_ACID_CHANGE=I126T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:189,53:242:99:532,0,5983
7    100551637    rs112753297    C    CCAA    2272.57    PASS    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=10.614;DB;DP=250;DS;FS=43.231;HRun=0;HaplotypeScore=1883.741;IndelType=I;MQ=54.4;MQ0=0;MQRankSum=-10.602;QD=9.09;ReadPosRankSum=-0.473;SNPEFF_AMINO_ACID_CHANGE=P130PT;SNPEFF_CODON_CHANGE=cca/cCAAca;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:215,35:250:99:2312,0,8409
7    100551646    rs77153975    A    G    43.51    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=5.249;DB;DP=250;DS;Dels=0.0;FS=63.528;HRun=1;HaplotypeScore=42.3546;MQ=54.44;MQ0=0;MQRankSum=-10.629;QD=0.17;ReadPosRankSum=-2.378;SNPEFF_AMINO_ACID_CHANGE=T133A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:193,49:250:73.50:74,0,5676
7    100551662    rs78684063    C    T    225.78    QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=2.903;DB;DP=248;DS;Dels=0.0;FS=31.359;HRun=0;HaplotypeScore=7.3372;MQ=54.09;MQ0=0;MQRankSum=-11.015;QD=0.91;ReadPosRankSum=-2.036;SNPEFF_AMINO_ACID_CHANGE=T138M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:193,54:248:99:256,0,5671
7    100551666    rs74318947    A    T    276.45    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DB;DP=249;DS;Dels=0.0;FS=20.015;HRun=0;HaplotypeScore=9.0384;MQ=54.36;MQ0=0;MQRankSum=-10.794;QD=1.11;ReadPosRankSum=-1.671;SNPEFF_AMINO_ACID_CHANGE=S139;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:195,53:249:99:306,0,6562
7    100551687    rs73714240    T    C    429.39    QDFilter2    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=1.968;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9916;MQ=54.4;MQ0=0;MQRankSum=-10.573;QD=1.72;ReadPosRankSum=0.188;SNPEFF_AMINO_ACID_CHANGE=S146;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:197,52:249:99:459,0,6463
7    100551692    rs73714242    C    T    838.48    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.198;DB;DP=250;DS;Dels=0.0;FS=4.724;HRun=0;HaplotypeScore=1.9916;MQ=53.92;MQ0=0;MQRankSum=-9.734;QD=3.35;ReadPosRankSum=-2.773;SNPEFF_AMINO_ACID_CHANGE=A148V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:183,67:250:99:868,0,5946
7    100551719    rs73714243    C    T    1276.44    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=6.506;DB;DP=250;DS;Dels=0.0;FS=25.742;HRun=0;HaplotypeScore=3.3888;MQ=54.55;MQ0=0;MQRankSum=-7.735;QD=5.11;ReadPosRankSum=-0.347;SNPEFF_AMINO_ACID_CHANGE=T157M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:178,72:250:99:1306,0,5447
7    100551729    rs73714244    C    T    1384.67    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=3.255;DB;DP=246;DS;Dels=0.0;FS=17.739;HRun=0;HaplotypeScore=3.321;MQ=54.76;MQ0=0;MQRankSum=-6.793;QD=5.63;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=S160;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:175,71:246:99:1415,0,5738
7    100551773    rs73398734    C    A    1847.83    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=9.405;DB;DP=247;DS;Dels=0.0;FS=21.502;HRun=1;HaplotypeScore=2.7979;MQ=54.27;MQ0=0;MQRankSum=-6.66;QD=7.48;ReadPosRankSum=-0.52;SNPEFF_AMINO_ACID_CHANGE=T175K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:165,81:247:99:1878,0,5094
7    100551778    rs73714247    G    A    1744.92    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=6.923;DB;DP=231;DS;Dels=0.0;FS=18.019;HRun=0;HaplotypeScore=2.7979;MQ=54.29;MQ0=0;MQRankSum=-6.004;QD=7.55;ReadPosRankSum=-0.967;SNPEFF_AMINO_ACID_CHANGE=V177M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:154,76:231:99:1775,0,4807
7    100551793    rs73398735    G    T    1628.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=249;DS;Dels=0.0;FS=11.039;HRun=2;HaplotypeScore=0.5784;MQ=54.44;MQ0=0;MQRankSum=-5.578;QD=6.54;ReadPosRankSum=-0.571;SNPEFF_AMINO_ACID_CHANGE=V182F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:166,83:249:99:1659,0,5605
7    100551839    .    CT    C    2786.22    PASS    AB=0.973;AC=1;AF=0.50;AN=2;BaseQRankSum=13.289;DP=250;DS;FS=1.026;HRun=2;HaplotypeScore=2174.2535;IndelType=D;MQ=52.67;MQ0=0;MQRankSum=-6.671;QD=11.14;ReadPosRankSum=0.449;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:243,7:250:99:2825,0,5613
7    100551849    rs77242346    A    T    2759.66    HaplotypeScoreFilter13    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=5.679;DB;DP=250;DS;Dels=0.0;FS=2.237;HRun=2;HaplotypeScore=15.5119;MQ=53.03;MQ0=0;MQRankSum=-6.245;QD=11.04;ReadPosRankSum=0.656;SNPEFF_AMINO_ACID_CHANGE=S200;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:134,116:250:99:2790,0,4343
7    100551990    .    A    G    1166.92    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.015;DP=250;DS;Dels=0.0;FS=6.718;HRun=0;HaplotypeScore=2.2432;MQ=57.29;MQ0=0;MQRankSum=-0.715;QD=4.67;ReadPosRankSum=2.504;SNPEFF_AMINO_ACID_CHANGE=P247;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:196,54:250:99:1197,0,6479
7    100552018    rs76249962    T    G    2028.46    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.511;DB;DP=246;DS;Dels=0.0;FS=4.55;HRun=0;HaplotypeScore=5.6053;MQ=57.91;MQ0=0;MQRankSum=-2.474;QD=8.25;ReadPosRankSum=0.492;SNPEFF_AMINO_ACID_CHANGE=S257A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:138,107:246:99:2058,0,4569
7    100552020    rs78680358    C    T    2148.64    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=250;DS;Dels=0.0;FS=3.67;HRun=0;HaplotypeScore=4.7732;MQ=57.94;MQ0=0;MQRankSum=0.638;QD=8.59;ReadPosRankSum=0.061;SNPEFF_AMINO_ACID_CHANGE=S257;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:139,111:250:99:2179,0,4566
7    100552044    rs73714250    T    G    2749.66    HaplotypeScoreFilter13    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.189;DB;DP=250;DS;Dels=0.0;FS=1.58;HRun=0;HaplotypeScore=44.8464;MQ=58.36;MQ0=0;MQRankSum=-0.349;QD=11.0;ReadPosRankSum=-0.148;SNPEFF_AMINO_ACID_CHANGE=S265;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:139,111:250:99:2780,0,4904
7    100552050    .    A    G    1341.37    HaplotypeScoreFilter13    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.273;DP=250;DS;Dels=0.0;FS=2.545;HRun=0;HaplotypeScore=40.8626;MQ=58.85;MQ0=0;MQRankSum=-0.509;QD=5.37;ReadPosRankSum=1.093;SNPEFF_AMINO_ACID_CHANGE=P267;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:186,64:250:99:1371,0,6598
7    100552094    rs62483698    G    C    3677.42    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.292;DB;DP=250;DS;Dels=0.0;FS=8.01;HRun=1;HaplotypeScore=0.9469;MQ=59.45;MQ0=0;MQRankSum=1.115;QD=14.71;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=G282A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:123,126:250:99:3677,0,4124
7    100552117    rs62483699    G    T    4004.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=250;DS;Dels=0.0;FS=3.606;HRun=1;HaplotypeScore=2.7599;MQ=59.3;MQ0=0;MQRankSum=-0.747;QD=16.02;ReadPosRankSum=1.184;SNPEFF_AMINO_ACID_CHANGE=A290S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:125,125:250:99:4004,0,4035
7    100552135    rs62483700    T    C    3363.39    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=6.157;DB;DP=250;DS;Dels=0.0;FS=5.184;HRun=1;HaplotypeScore=5.5837;MQ=59.19;MQ0=0;MQRankSum=0.726;QD=13.45;ReadPosRankSum=1.346;SNPEFF_AMINO_ACID_CHANGE=S296P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:128,120:250:99:3363,0,4136
7    100552251    rs9691900    T    C    2804.48    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=2.11;DB;DP=250;DS;Dels=0.0;FS=4.33;HRun=3;HaplotypeScore=0.8667;MQ=56.3;MQ0=0;MQRankSum=-3.038;QD=11.22;ReadPosRankSum=-0.276;SNPEFF_AMINO_ACID_CHANGE=S334;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:136,113:250:99:2834,0,4537
7    100552311    rs12535515    C    T    1666.27    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.295;DB;DP=250;DS;Dels=0.0;FS=1.714;HRun=0;HaplotypeScore=3.334;MQ=56.24;MQ0=0;MQRankSum=-2.616;QD=6.67;ReadPosRankSum=1.04;SNPEFF_AMINO_ACID_CHANGE=T354;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:173,77:250:99:1696,0,6104
7    100552338    rs73398798    C    T    1315.81    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=4.018;DB;DP=249;DS;Dels=0.0;FS=4.098;HRun=0;HaplotypeScore=3.2311;MQ=55.43;MQ0=0;MQRankSum=-6.029;QD=5.28;ReadPosRankSum=-1.842;SNPEFF_AMINO_ACID_CHANGE=T363;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:176,72:249:99:1346,0,5685
7    100552358    rs73714254    C    G    974.69    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=249;DS;Dels=0.0;FS=7.306;HRun=0;HaplotypeScore=3.6922;MQ=54.73;MQ0=0;MQRankSum=-7.825;QD=3.91;ReadPosRankSum=-1.613;SNPEFF_AMINO_ACID_CHANGE=T370S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:177,72:249:99:1005,0,6090
7    100552371    rs73714255    C    G    680.53    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.461;DB;DP=246;DS;Dels=0.0;FS=1.868;HRun=0;HaplotypeScore=2.4449;MQ=54.14;MQ0=0;MQRankSum=-9.279;QD=2.77;ReadPosRankSum=-0.415;SNPEFF_AMINO_ACID_CHANGE=I374M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:178,67:246:99:711,0,6286
7    100552384    rs75597914    A    G    603.21    HaplotypeScoreFilter13    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=4.014;DB;DP=247;DS;Dels=0.0;FS=3.426;HRun=0;HaplotypeScore=35.1993;MQ=52.49;MQ0=0;MQRankSum=-11.741;QD=2.44;ReadPosRankSum=-0.519;SNPEFF_AMINO_ACID_CHANGE=T379A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:170,77:247:99:633,0,5772
7    100552390    rs73714257    T    C    75.19    HaplotypeScoreFilter13;QDFilter2    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.404;DB;DP=240;DS;Dels=0.0;FS=4.376;HRun=0;HaplotypeScore=35.6679;MQ=52.35;MQ0=0;MQRankSum=-11.818;QD=0.31;ReadPosRankSum=-0.547;SNPEFF_AMINO_ACID_CHANGE=Y381H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:165,75:240:99:105,0,5764
7    100552412    rs73714259    T    C    848.85    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.906;DB;DP=244;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2424;MQ=53.1;MQ0=0;MQRankSum=-10.122;QD=3.48;ReadPosRankSum=-1.404;SNPEFF_AMINO_ACID_CHANGE=M388T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:167,77:244:99:879,0,5848
7    100552440    rs80290400    C    T    1192.70    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.176;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2126;MQ=53.75;MQ0=0;MQRankSum=-9.795;QD=4.77;ReadPosRankSum=-0.149;SNPEFF_AMINO_ACID_CHANGE=P397;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:170,80:250:99:1223,0,5980
7    100552535    rs73163758    G    A    1572.92    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.322;DB;DP=246;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=55.55;MQ0=0;MQRankSum=-4.969;QD=6.39;ReadPosRankSum=1.424;SNPEFF_AMINO_ACID_CHANGE=S429N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:168,78:246:99:1603,0,5489
7    100552536    rs73163759    T    C    1614.21    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=0.815;DB;DP=246;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=55.55;MQ0=0;MQRankSum=-3.994;QD=6.56;ReadPosRankSum=1.239;SNPEFF_AMINO_ACID_CHANGE=S429;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:168,78:246:99:1644,0,5436
7    100552550    rs73163762    T    C    851.75    HaplotypeScoreFilter13    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.508;DB;DP=249;DS;Dels=0.0;FS=1.687;HRun=5;HaplotypeScore=42.2251;MQ=55.29;MQ0=0;MQRankSum=-4.054;QD=3.42;ReadPosRankSum=-1.603;SNPEFF_AMINO_ACID_CHANGE=L434P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:162,87:249:99:882,0,5353
7    100552577    rs144580177    C    T    639.96    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=2.71;DB;DP=246;DS;Dels=0.0;FS=5.336;HRun=0;HaplotypeScore=1.8273;MQ=54.45;MQ0=0;MQRankSum=-1.463;QD=2.6;ReadPosRankSum=-1.17;SNPEFF_AMINO_ACID_CHANGE=P443L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:200,45:246:99:670,0,6437
7    100552644    rs2904850    C    A    1409.96    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=250;DS;Dels=0.0;FS=5.404;HRun=0;HaplotypeScore=8.4501;MQ=53.17;MQ0=0;MQRankSum=-8.434;QD=5.64;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=P465;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:171,79:250:99:1440,0,5181
7    100552657    rs75471530    A    G    1061.78    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.34;DB;DP=249;DS;Dels=0.0;FS=6.471;HRun=0;HaplotypeScore=5.6124;MQ=52.32;MQ0=0;MQRankSum=-9.363;QD=4.25;ReadPosRankSum=-0.953;SNPEFF_AMINO_ACID_CHANGE=T470A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:165,84:249:99:1092,0,5234
7    100552659    rs78182596    T    C    1263.52    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=3.787;DB;DP=250;DS;Dels=0.0;FS=12.394;HRun=1;HaplotypeScore=5.6124;MQ=52.32;MQ0=0;MQRankSum=-9.446;QD=5.05;ReadPosRankSum=-1.349;SNPEFF_AMINO_ACID_CHANGE=T470;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:166,84:250:99:1294,0,5405
7    100552675    rs73163764    C    T    1125.93    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=247;DS;Dels=0.0;FS=8.306;HRun=0;HaplotypeScore=0.7887;MQ=51.4;MQ0=0;MQRankSum=-11.067;QD=4.56;ReadPosRankSum=-1.12;SNPEFF_AMINO_ACID_CHANGE=P476S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:160,87:247:99:1156,0,5402
7    100552711    rs75799835    T    A    636.23    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.233;DB;DP=249;DS;Dels=0.0;FS=5.175;HRun=1;HaplotypeScore=5.1996;MQ=51.62;MQ0=0;MQRankSum=-11.361;QD=2.56;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=S488T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:161,88:249:99:666,0,5275
7    100552713    rs75130157    A    G    630.25    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.123;DB;DP=238;DS;Dels=0.0;FS=3.352;HRun=0;HaplotypeScore=4.5345;MQ=51.47;MQ0=0;MQRankSum=-11.883;QD=2.65;ReadPosRankSum=-1.205;SNPEFF_AMINO_ACID_CHANGE=S488;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:152,86:238:99:660,0,5032
7    100552727    rs74529310    G    C    1048.61    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=5.319;DB;DP=250;DS;Dels=0.0;FS=2.423;HRun=1;HaplotypeScore=4.7264;MQ=51.72;MQ0=0;MQRankSum=-10.818;QD=4.19;ReadPosRankSum=-1.63;SNPEFF_AMINO_ACID_CHANGE=R493P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:159,90:250:99:1079,0,4791
7    100552738    rs79874934    C    T    1175.93    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.019;DB;DP=246;DS;Dels=0.0;FS=1.084;HRun=1;HaplotypeScore=1.7256;MQ=52.03;MQ0=0;MQRankSum=-10.237;QD=4.78;ReadPosRankSum=-1.83;SNPEFF_AMINO_ACID_CHANGE=Q497*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:156,90:246:99:1206,0,5161
7    100552739    rs75517157    A    G    1121.22    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.7;DB;DP=246;DS;Dels=0.0;FS=0.52;HRun=1;HaplotypeScore=1.7256;MQ=52.03;MQ0=0;MQRankSum=-9.805;QD=4.56;ReadPosRankSum=-1.692;SNPEFF_AMINO_ACID_CHANGE=Q497R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100551250_100552774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:156,90:246:99:1151,0,5257
7    100552788    rs73398800    C    T    2111.74    PASS    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.48;DB;DP=245;DS;Dels=0.0;FS=8.77;HRun=0;HaplotypeScore=3.4078;MQ=54.04;MQ0=0;MQRankSum=-8.306;QD=8.62;ReadPosRankSum=1.476;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:156,89:245:99:2142,0,5196
7    100552837    rs73714264    G    A    2235.37    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=232;DS;Dels=0.0;FS=0.679;HRun=0;HaplotypeScore=0.9159;MQ=54.62;MQ0=0;MQRankSum=-5.826;QD=9.64;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:145,86:232:99:2265,0,4838
7    100552854    rs73714265    G    A    1825.92    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=219;DS;Dels=0.0;FS=2.382;HRun=1;HaplotypeScore=1.8055;MQ=55.32;MQ0=0;MQRankSum=-4.449;QD=8.34;ReadPosRankSum=0.949;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:145,74:219:99:1856,0,4619
7    100552867    rs73714266    T    C    1753    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=3.11;DB;DP=192;DS;Dels=0.0;FS=4.546;HRun=1;HaplotypeScore=0.8321;MQ=55.42;MQ0=0;MQRankSum=-4.942;QD=9.13;ReadPosRankSum=-0.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:122,70:192:99:1783,0,3976
7    100552915    rs2904852    A    C    2944.99    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=4.137;DB;DP=150;Dels=0.0;FS=0.641;HRun=1;HaplotypeScore=1.984;MQ=56.2;MQ0=0;MQRankSum=0.847;QD=19.63;ReadPosRankSum=0.152;SNPEFF_AMINO_ACID_CHANGE=G10;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100552886_100553066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:55,95:150:99:2975,0,1651
7    100552978    rs73163765    T    C    1406.48    HaplotypeScoreFilter13    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.741;DB;DP=123;Dels=0.0;FS=5.684;HRun=0;HaplotypeScore=28.9285;MQ=58.07;MQ0=0;MQRankSum=-1.002;QD=11.43;ReadPosRankSum=1.028;SNPEFF_AMINO_ACID_CHANGE=N31;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100552886_100553066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:66,57:123:99:1436,0,2020
7    100552984    rs73163766    T    C    680.35    HaplotypeScoreFilter13    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=3.637;DB;DP=124;Dels=0.0;FS=1.672;HRun=1;HaplotypeScore=28.9285;MQ=58.09;MQ0=0;MQRankSum=-0.64;QD=5.49;ReadPosRankSum=-0.277;SNPEFF_AMINO_ACID_CHANGE=G33;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100552886_100553066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:89,35:124:99:710,0,2761
7    100553002    rs68094465    A    G    1336.60    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=110;Dels=0.0;FS=3.618;HRun=0;HaplotypeScore=1.8606;MQ=58.05;MQ0=0;MQRankSum=-2.793;QD=12.15;ReadPosRankSum=-0.064;SNPEFF_AMINO_ACID_CHANGE=K39;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100552886_100553066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1367,0,1740
7    100553073    rs73714269    T    A    884.36    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=73;Dels=0.0;FS=6.29;HRun=0;HaplotypeScore=5.308;MQ=58.08;MQ0=0;MQRankSum=0.542;QD=12.11;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:40,33:73:99:914,0,1326
7    100553077    rs73714270    A    C    729.09    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.352;DB;DP=72;Dels=0.0;FS=9.001;HRun=2;HaplotypeScore=6.3077;MQ=58.05;MQ0=0;MQRankSum=-0.271;QD=10.13;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:39,33:72:99:759,0,1293
7    100553117    rs73400705    G    A    610.79    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.66;DB;DP=42;Dels=0.0;FS=4.56;HRun=1;HaplotypeScore=0.5784;MQ=58.33;MQ0=0;MQRankSum=0.222;QD=14.54;ReadPosRankSum=-0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:19,23:42:99:641,0,586
7    100555116    rs34281234    A    AT    203.73    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=87.2453;IndelType=I;MQ=49.18;MQ0=1;MQRankSum=0.311;QD=9.7;ReadPosRankSum=-1.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC118759.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379458    GT:AD:DP:GQ:PL    0/1:10,11:20:15.82:243,0,16
7    100606424    rs78881982    T    C    37.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.736;QD=12.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
7    100606462    rs148528676    A    C    71.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=-0.727;QD=17.77;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:101,0,27
7    100606705    rs117680348    C    T    52.62    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.47;MQ0=1;MQRankSum=-2.219;QD=5.26;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:6,4:10:82.61:83,0,162
7    100606825    rs62483704    T    C    33.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=41.19;MQ0=0;MQRankSum=-2.017;QD=4.22;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:4,4:8:63.74:64,0,141
7    100607568    rs150576274    G    A    58.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.19;MQ0=0;MQRankSum=-0.248;QD=6.5;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:6,3:9:88.48:88,0,198
7    100607643    rs5886153    CT    C    1246.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=1;HaplotypeScore=481.8823;IndelType=D;MQ=49.48;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1289,126,0
7    100607851    rs6960854    C    G    1488.75    PASS    AB=0.229;AC=1;AF=0.50;AN=2;BaseQRankSum=1.145;DB;DP=70;Dels=0.0;FS=9.901;HRun=0;HaplotypeScore=2.4328;MQ=57.31;MQ0=0;MQRankSum=0.448;QD=21.27;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=L156;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100607746_100607894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:16,54:70:99:1519,0,399
7    100607871    rs6960868    C    T    1144.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=4.78;DB;DP=60;Dels=0.0;FS=5.414;HRun=0;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;MQRankSum=-0.536;QD=19.08;ReadPosRankSum=0.793;SNPEFF_AMINO_ACID_CHANGE=A163V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100607746_100607894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:20,40:60:99:1175,0,514
7    100607903    rs6961167    G    A    629.48    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.908;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=2.37;QD=24.21;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:7,19:26:99:659,0,211
7    100607973    rs6960893    A    G    225.88    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=4.228;HRun=2;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.898;QD=22.59;ReadPosRankSum=-0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:2,8:10:51.79:256,0,52
7    100608016    rs6961053    C    G    110.10    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=7.782;HRun=3;HaplotypeScore=0.0;MQ=45.47;MQ0=0;MQRankSum=-2.219;QD=12.23;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:4,5:9:99:140,0,129
7    100608028    rs74321686    T    C    113.10    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=9.7;HRun=1;HaplotypeScore=0.0;MQ=43.31;MQ0=0;MQRankSum=-1.92;QD=14.14;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:3,5:8:99:143,0,100
7    100608047    rs76969558    A    G    82.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=44.98;MQ0=0;MQRankSum=-1.754;QD=11.81;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:3,4:7:99:113,0,104
7    100608154    rs10250885    G    A    115.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
7    100608264    rs73163789    T    A    706.84    PASS    AB=0.16;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.409;DB;DP=25;Dels=0.0;FS=2.601;HRun=0;HaplotypeScore=3.8616;MQ=55.21;MQ0=0;MQRankSum=2.78;QD=28.27;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:4,21:25:31.08:737,0,31
7    100608268    .    C    CCTTAACCCCTTGAT    1661.79    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.451;DP=34;FS=8.766;HRun=0;HaplotypeScore=420.522;IndelType=I;MQ=50.8;MQ0=0;MQRankSum=-4.018;QD=48.88;ReadPosRankSum=-1.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:22,9:34:99:1701,0,2169
7    100608370    rs73714276    A    C    432    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=49.96;MQ0=0;MQRankSum=-6.258;QD=6.75;ReadPosRankSum=-1.585;SNPEFF_AMINO_ACID_CHANGE=E192A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100608307_100608372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:40,24:64:99:462,0,1135
7    100608375    rs75592954    G    A    388.49    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=61;Dels=0.0;FS=1.074;HRun=1;HaplotypeScore=2.5224;MQ=50.09;MQ0=0;MQRankSum=-6.103;QD=6.37;ReadPosRankSum=-1.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:39,22:61:99:418,0,1084
7    100608467    .    C    CT    491.23    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.027;DP=18;FS=0.0;HRun=3;HaplotypeScore=178.3085;IndelType=I;MQ=57.94;MQ0=0;MQRankSum=1.858;QD=27.29;ReadPosRankSum=-2.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:4,14:18:78.61:530,0,79
7    100608472    rs10251045    C    G    238.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=12.9972;MQ=57.15;MQ0=0;QD=14.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    1/1:0,17:17:29.95:272,30,0
7    100608493    rs77278976    T    C    39.34    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=13;Dels=0.0;FS=3.041;HRun=2;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-1.929;QD=3.03;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:9,4:13:69.33:69,0,328
7    100608572    rs10251414    G    C    75.16    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.509;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.324;QD=3.96;ReadPosRankSum=0.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:14,5:19:99:105,0,506
7    100608710    rs62483706    A    C    1131.93    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.578;DB;DP=109;Dels=0.0;FS=4.104;HRun=4;HaplotypeScore=0.9734;MQ=59.36;MQ0=0;MQRankSum=-1.776;QD=10.38;ReadPosRankSum=-0.889;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:63,45:109:99:1162,0,1747
7    100608868    rs67377634    A    G    554.20    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.603;DB;DP=73;Dels=0.0;FS=8.252;HRun=1;HaplotypeScore=0.9159;MQ=57.69;MQ0=0;MQRankSum=-1.475;QD=7.59;ReadPosRankSum=-0.388;SNPEFF_AMINO_ACID_CHANGE=L239;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100608729_100608891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:48,25:73:99:584,0,1520
7    100608884    rs73163797    G    A    286.25    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.167;DB;DP=64;Dels=0.0;FS=8.248;HRun=0;HaplotypeScore=0.0;MQ=57.36;MQ0=0;MQRankSum=-1.381;QD=4.47;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=A245T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100608729_100608891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:44,17:64:99:316,0,1263
7    100608912    rs73163798    A    C    46.18    QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.14;DB;DP=41;Dels=0.0;FS=2.547;HRun=1;HaplotypeScore=12.9024;MQ=55.82;MQ0=0;MQRankSum=-0.565;QD=1.13;ReadPosRankSum=-1.875;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:28,6:41:76.17:76,0,857
7    100608929    rs80040741    G    T    110.65    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.586;DB;DP=34;Dels=0.0;FS=2.558;HRun=0;HaplotypeScore=2.9988;MQ=54.92;MQ0=0;MQRankSum=-3.421;QD=3.25;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:24,10:34:99:141,0,743
7    100609015    rs67818529    C    G    44.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=53.95;MQ0=0;MQRankSum=-1.92;QD=5.6;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:5,3:8:74.82:75,0,182
7    100609486    rs62483707    C    G    39.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=4.91;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:5,3:8:69.30:69,0,111
7    100609966    rs10274451    T    C    1044.35    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.735;DB;DP=65;Dels=0.0;FS=13.753;HRun=2;HaplotypeScore=1.8318;MQ=59.36;MQ0=0;MQRankSum=0.007;QD=16.07;ReadPosRankSum=0.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:28,37:65:99:1074,0,963
7    100609987    rs10274460    T    C    1523.61    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.578;DB;DP=69;Dels=0.0;FS=1.202;HRun=1;HaplotypeScore=0.8667;MQ=59.39;MQ0=0;MQRankSum=0.215;QD=22.08;ReadPosRankSum=-0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:18,51:69:99:1554,0,554
7    100610026    rs10229209    A    C    1647.82    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=4.373;DB;DP=112;Dels=0.0;FS=1.767;HRun=0;HaplotypeScore=1.6918;MQ=59.0;MQ0=0;MQRankSum=0.185;QD=14.71;ReadPosRankSum=-0.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:58,54:112:99:1678,0,1738
7    100610069    rs10258821    C    T    2457.35    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.549;DB;DP=167;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=3.1947;MQ=59.22;MQ0=0;MQRankSum=-0.472;QD=14.71;ReadPosRankSum=-0.071;SNPEFF_AMINO_ACID_CHANGE=H284Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100610052_100610104;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422757    GT:AD:DP:GQ:PL    0/1:81,86:167:99:2487,0,2392
7    100615207    .    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:72,0,25
7    100615281    rs73400789    A    G    108.28    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.788;QD=9.02;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:7,5:12:99:138,0,254
7    100615321    rs75376427    G    A    69.61    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.444;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-3.23;QD=3.48;ReadPosRankSum=0.524;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319509    GT:AD:DP:GQ:PL    0/1:15,5:20:99:100,0,525
7    100616044    rs138965034    C    G    169.70    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=15.43;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483133    GT:AD:DP:GQ:PL    0/1:5,6:11:99:200,0,165
7    100624699    rs78043646    G    A    59.72    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=5.97;ReadPosRankSum=0.895;SNPEFF_AMINO_ACID_CHANGE=G121R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100624651_100624788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    0/1:7,3:10:89.71:90,0,190
7    100624718    rs4363124    G    C    277.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.25;SNPEFF_AMINO_ACID_CHANGE=G127A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100624651_100624788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:311,24,0
7    100634476    rs6980143    C    G    7410.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=210;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7036;MQ=59.1;MQ0=0;QD=35.29;SNPEFF_AMINO_ACID_CHANGE=T211S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,210:210:99:7411,554,0
7    100634640    rs1791    T    G    8060.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;DB;DP=237;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.5439;MQ=58.7;MQ0=0;MQRankSum=0.09;QD=34.01;ReadPosRankSum=1.657;SNPEFF_AMINO_ACID_CHANGE=S266A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:1,236:237:99:8061,566,0
7    100634887    rs117387753    G    A    1670.58    HaplotypeScoreFilter13    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.229;DB;DP=148;Dels=0.0;FS=1.389;HRun=0;HaplotypeScore=21.4323;MQ=58.4;MQ0=0;MQRankSum=1.24;QD=11.29;ReadPosRankSum=-0.268;SNPEFF_AMINO_ACID_CHANGE=R348H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:83,64:148:99:1701,0,2413
7    100634933    rs182707377    G    C    826.26    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.481;DB;DP=180;Dels=0.0;FS=19.709;HRun=0;HaplotypeScore=1.9966;MQ=54.51;MQ0=0;MQRankSum=-7.234;QD=4.59;ReadPosRankSum=-1.461;SNPEFF_AMINO_ACID_CHANGE=R363S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:134,46:180:99:856,0,4348
7    100634964    rs4370452    C    A    6437.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.334;DB;DP=194;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.4322;MQ=52.28;MQ0=0;MQRankSum=1.382;QD=33.19;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=P374T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:2,192:194:99:6438,475,0
7    100635375    rs10808115    A    C    8316.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7552;MQ=59.26;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=S511R;SNPEFF_CODON_CHANGE=Agc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8317,662,0
7    100635591    rs10953312    C    A    8670.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5611;MQ=53.03;MQ0=0;QD=34.68;SNPEFF_AMINO_ACID_CHANGE=R583S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8671,665,0
7    100635661    rs10953313    T    C    7959.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9979;MQ=55.0;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=M606T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,250:250:99:7959,638,0
7    100635679    rs10953314    C    G    8225.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=56.92;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=T612S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,249:249:99:8225,617,0
7    100636408    rs142190605    G    A    1540.49    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.284;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6517;MQ=25.0;MQ0=5;MQRankSum=0.853;QD=20.54;ReadPosRankSum=-1.319;SNPEFF_AMINO_ACID_CHANGE=R855H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:2,71:75:99:1573,132,0
7    100636459    .    C    T    86.19    MQFilter40;QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=10.9;MQ0=34;MQRankSum=-0.691;QD=1.8;ReadPosRankSum=-0.888;SNPEFF_AMINO_ACID_CHANGE=T1015M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633866_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    0/1:37,11:48:25.37:116,0,25
7    100636467    .    C    G    70.24    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.95;MQ0=43;MQRankSum=-0.747;QD=1.35;ReadPosRankSum=-0.747;SNPEFF_AMINO_ACID_CHANGE=L1018V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633866_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    1/1:45,7:52:11.99:103,12,0
7    100637073    .    C    T    90.83    MQFilter40;QDFilter2    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.247;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=5.47;MQ0=203;MQRankSum=0.398;QD=0.36;ReadPosRankSum=0.764;SNPEFF_AMINO_ACID_CHANGE=R1077C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:179,71:250:91.20:121,0,91
7    100637213    rs189132171    G    A    62.13    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=137;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=5.73;MQ0=107;QD=0.45;SNPEFF_AMINO_ACID_CHANGE=L1123;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,136:137:11.95:95,12,0
7    100638545    .    G    A    80.44    MQFilter40;QDFilter2    AB=0.928;AC=1;AF=0.50;AN=2;BaseQRankSum=3.725;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.36;MQ0=219;MQRankSum=1.825;QD=0.32;ReadPosRankSum=0.275;SNPEFF_AMINO_ACID_CHANGE=T1567;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:232,18:250:99:110,0,254
7    100638856    rs76496013    A    G    4129.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.438;DB;DP=206;DS;Dels=0.0;FS=3.037;HRun=0;HaplotypeScore=5.9744;MQ=40.69;MQ0=36;MQRankSum=4.524;QD=20.04;ReadPosRankSum=1.916;SNPEFF_AMINO_ACID_CHANGE=H1671R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:45,159:206:99:4129,228,0
7    100639012    rs55638317    C    T    2424.81    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DB;DP=250;DS;Dels=0.0;FS=8.751;HRun=1;HaplotypeScore=4.5741;MQ=23.83;MQ0=155;MQRankSum=3.208;QD=9.7;ReadPosRankSum=0.125;SNPEFF_AMINO_ACID_CHANGE=T1723I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:151,99:250:99:2458,162,0
7    100639040    rs28459498    C    T    1008.39    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.052;DB;DP=250;DS;Dels=0.0;FS=16.128;HRun=0;HaplotypeScore=0.0;MQ=13.17;MQ0=198;MQRankSum=2.799;QD=4.03;ReadPosRankSum=-0.704;SNPEFF_AMINO_ACID_CHANGE=S1732;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:193,57:250:56.85:1041,57,0
7    100639049    rs56357244    G    C    634.66    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.876;DB;DP=235;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=11.28;MQ0=194;MQRankSum=2.516;QD=2.7;ReadPosRankSum=-1.695;SNPEFF_AMINO_ACID_CHANGE=L1735F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:188,47:235:42.47:668,42,0
7    100639054    rs56353590    G    A    555.21    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.029;DB;DP=246;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=10.47;MQ0=206;MQRankSum=3.046;QD=2.26;ReadPosRankSum=0.399;SNPEFF_AMINO_ACID_CHANGE=R1737H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:201,44:246:15.77:588,16,0
7    100639066    rs28483629    C    T    488.95    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.208;DB;DP=212;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=10.08;MQ0=180;MQRankSum=2.563;QD=2.31;ReadPosRankSum=0.678;SNPEFF_AMINO_ACID_CHANGE=S1741L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:176,36:212:9.76:521,10,0
7    100639095    rs71557212    A    C    245.86    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.741;DB;DP=152;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=9.84;MQ0=130;MQRankSum=0.529;QD=1.62;ReadPosRankSum=1.27;SNPEFF_AMINO_ACID_CHANGE=T1751P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:129,23:152:6.38:277,6,0
7    100639112    rs28585369    G    C    278.55    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.171;DB;DP=138;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7732;MQ=10.78;MQ0=114;MQRankSum=1.656;QD=2.02;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=S1756;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:109,28:138:9.39:311,9,0
7    100639139    rs71557213    C    T    206.91    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.28;DB;DP=92;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6307;MQ=10.73;MQ0=73;MQRankSum=0.056;QD=2.25;ReadPosRankSum=0.615;SNPEFF_AMINO_ACID_CHANGE=L1765;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:63,29:92:3.37:237,3,0
7    100639147    .    A    G    113.93    MQFilter40;QDFilter2    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.425;DP=67;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=10.97;MQ0=51;MQRankSum=0.934;QD=1.7;ReadPosRankSum=0.085;SNPEFF_AMINO_ACID_CHANGE=E1768G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:38,28:67:5.65:143,0,6
7    100639153    .    C    T    113.93    MQFilter40    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=1.875;DP=55;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.295;MQ=10.04;MQ0=42;MQRankSum=0.888;QD=2.07;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=T1770M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:26,29:55:5.65:143,0,6
7    100639160    .    C    T    85.70    MQFilter40    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4964;MQ=11.61;MQ0=28;MQRankSum=1.398;QD=2.2;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Y1772;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:30,9:39:37.29:116,0,37
7    100639177    .    C    T    122.89    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=10.41;MQ0=31;MQRankSum=1.666;QD=3.07;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=S1778L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:7,33:40:15.03:156,15,0
7    100641872    rs139851927    T    C    470.80    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6918;MQ=8.61;MQ0=193;QD=1.88;SNPEFF_AMINO_ACID_CHANGE=S2676;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,250:250:57.01:504,57,0
7    100643367    .    C    T    950.72    MQFilter40    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=1.229;DP=250;DS;Dels=0.0;FS=23.584;HRun=1;HaplotypeScore=2.884;MQ=29.95;MQ0=28;MQRankSum=-5.902;QD=3.8;ReadPosRankSum=-0.495;SNPEFF_AMINO_ACID_CHANGE=L3175;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:184,66:250:99:981,0,4050
7    100643477    rs75096265    A    C    1239.86    MQFilter40    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.117;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4457;MQ=35.82;MQ0=10;MQRankSum=1.398;QD=4.96;ReadPosRankSum=-0.309;SNPEFF_AMINO_ACID_CHANGE=S3211;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:179,70:250:99:1270,0,4672
7    100645731    .    G    A    59.80    MQFilter40;QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=3.254;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.893;MQ=29.21;MQ0=29;MQRankSum=0.971;QD=0.24;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=E3963K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:215,34:250:89.80:90,0,4771
7    100646521    rs77883124    T    C    678.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1445;MQ=12.35;MQ0=74;QD=4.55;SNPEFF_AMINO_ACID_CHANGE=M4226T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,149:149:81:711,81,0
7    100646747    rs144083587    A    G    455.69    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.217;DB;DP=193;DS;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=11.77;MQ0=114;MQRankSum=-2.387;QD=2.36;ReadPosRankSum=-2.355;SNPEFF_AMINO_ACID_CHANGE=T4301;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:2,191:193:25.20:489,25,0
7    100647338    .    C    A    110.22    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=4.05;MQ0=234;QD=0.44;SNPEFF_AMINO_ACID_CHANGE=D4498E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:142,108:250:17.95:143,18,0
7    100647339    .    G    A    110.22    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=4.07;MQ0=232;QD=0.44;SNPEFF_AMINO_ACID_CHANGE=A4499T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:139,109:248:17.95:143,18,0
7    100647594    rs111391555    A    C    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=5.13;MQ0=62;QD=0.56;SNPEFF_AMINO_ACID_CHANGE=T4584P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:58,6:64:6.02:67,6,0
7    100647611    rs113623897    G    C    101.24    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=7.75;MQ0=52;QD=1.81;SNPEFF_AMINO_ACID_CHANGE=S4589;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:46,10:56:12.03:134,12,0
7    100647638    rs12534950    C    T    231.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.08;MQ0=46;QD=4.21;SNPEFF_AMINO_ACID_CHANGE=L4598;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:32,22:54:24.06:265,24,0
7    100647646    rs111352779    A    G    299.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.26;MQ0=35;QD=6.52;SNPEFF_AMINO_ACID_CHANGE=E4601G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:19,27:46:30.08:333,30,0
7    100647652    rs111660528    C    T    350.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.39;MQ0=31;QD=7.63;SNPEFF_AMINO_ACID_CHANGE=T4603M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:14,31:46:36.08:384,36,0
7    100647659    rs139638547    C    T    228.53    MQFilter40    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.852;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.0;MQ0=27;MQRankSum=-0.599;QD=4.66;ReadPosRankSum=-1.232;SNPEFF_AMINO_ACID_CHANGE=Y4605;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:33,16:49:99:259,0,245
7    100647676    rs113138639    C    T    1018.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.49;MQ0=32;QD=14.35;SNPEFF_AMINO_ACID_CHANGE=S4611L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:8,63:71:96.20:1052,96,0
7    100647819    rs11766024    C    T    5641.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=191;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.92;MQ0=13;QD=29.54;SNPEFF_AMINO_ACID_CHANGE=H4659Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,191:191:99:5641,427,0
7    100647875    rs11766048    C    A    5877.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=53.5;MQ0=0;QD=34.98;SNPEFF_AMINO_ACID_CHANGE=S4677;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:1,167:168:99:5877,439,0
7    100647920    rs11772963    A    C    4559.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.48;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=T4692;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:0,141:141:99:4559,358,0
7    100648029    rs10953315    G    A    5162.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.283;QD=33.09;ReadPosRankSum=1.46;SNPEFF_AMINO_ACID_CHANGE=A4729T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:1,155:156:99:5162,363,0
7    100648117    rs11766125    C    G    4423.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DB;DP=129;Dels=0.0;FS=3.996;HRun=0;HaplotypeScore=4.4218;MQ=59.46;MQ0=0;MQRankSum=-1.597;QD=34.29;ReadPosRankSum=0.92;SNPEFF_AMINO_ACID_CHANGE=T4758R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100633912_100648800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    1/1:1,128:129:99:4424,290,0
7    100649758    .    G    T    676.08    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.697;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.28;MQ0=0;MQRankSum=0.909;QD=21.13;ReadPosRankSum=0.866;SNPEFF_AMINO_ACID_CHANGE=C4988F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100649752_100649853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536621    GT:AD:DP:GQ:PL    0/1:11,21:32:99:706,0,292
7    100651855    rs12532750    A    G    604.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.71;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:637,48,0
7    100652181    rs12538004    G    A    347.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:381,30,0
7    100652317    rs12540832    T    G    1242.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1275,99,0
7    100656003    rs3924886    G    C    586.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:619,48,0
7    100658717    rs10229453    T    C    85.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
7    100659104    rs55869514    T    C    185.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379442    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:219,18,0
7    100675976    rs56103274    G    A    6909    PASS    AC=2;AF=1.00;AN=2;DB;DP=212;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.4543;MQ=59.56;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=A427T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100674882_100687100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306151    GT:AD:DP:GQ:PL    1/1:0,210:212:99:6909,521,0
7    100678086    rs4729647    T    C    8230.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=247;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=54.61;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=I1130T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100674882_100687100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306151    GT:AD:DP:GQ:PL    1/1:0,247:247:99:8231,644,0
7    100679366    rs74209688    A    G    3493.92    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=209;Dels=0.0;FS=2.389;HRun=0;HaplotypeScore=0.9665;MQ=59.52;MQ0=0;MQRankSum=0.047;QD=16.72;ReadPosRankSum=0.155;SNPEFF_AMINO_ACID_CHANGE=T1557A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100674882_100687100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306151    GT:AD:DP:GQ:PL    0/1:96,113:209:99:3494,0,2965
7    100679902    rs55974941    A    G    6435.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=202;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.7535;MQ=59.59;MQ0=0;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=E1735;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100674882_100687100;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306151    GT:AD:DP:GQ:PL    1/1:0,202:202:99:6435,509,0
7    100681359    rs11979706    C    G    7970.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.213;DB;DP=250;DS;Dels=0.0;FS=3.065;HRun=0;HaplotypeScore=1.7333;MQ=59.45;MQ0=0;MQRankSum=-1.235;QD=31.88;ReadPosRankSum=1.675;SNPEFF_AMINO_ACID_CHANGE=P2221R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100674882_100687100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306151    GT:AD:DP:GQ:PL    1/1:2,248:250:99:7971,597,0
7    100681762    rs10953316    A    G    4574.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5986;MQ=59.68;MQ0=0;QD=31.55;SNPEFF_AMINO_ACID_CHANGE=T2355;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100674882_100687100;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306151    GT:AD:DP:GQ:PL    1/1:0,145:145:99:4575,349,0
7    100692341    rs4515470    C    G    261.44    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.267;QD=18.67;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470303    GT:AD:DP:GQ:PL    0/1:5,9:14:99:291,0,151
7    100692397    rs10227169    C    G    62.01    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=6.2;ReadPosRankSum=-1.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470303    GT:AD:DP:GQ:PL    0/1:7,3:10:92:92,0,247
7    100692553    rs77235403    A    G    1355.80    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.093;DB;DP=100;Dels=0.0;FS=5.701;HRun=1;HaplotypeScore=0.9469;MQ=59.77;MQ0=0;MQRankSum=2.463;QD=13.56;ReadPosRankSum=-0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470303    GT:AD:DP:GQ:PL    0/1:48,52:100:99:1386,0,1348
7    100692680    rs10246021    T    G    2947.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470303    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2980,223,0
7    100693575    rs7806980    G    T    39.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470303    GT:AD:DP:GQ:PL    0/1:2,2:4:57.44:69,0,57
7    100693849    rs6978780    C    T    620.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.883;DB;DP=35;Dels=0.0;FS=3.614;HRun=0;HaplotypeScore=1.9125;MQ=60.0;MQ0=0;MQRankSum=0.25;QD=17.73;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=T4269;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100693765_100693916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306151    GT:AD:DP:GQ:PL    0/1:15,20:35:99:650,0,358
7    100694854    rs67328257    G    A    337.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.739;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.81;QD=16.89;ReadPosRankSum=-0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470303    GT:AD:DP:GQ:PL    0/1:8,12:20:99:368,0,173
7    100695058    rs6966570    T    C    1478.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470303    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1512,120,0
7    100701451    rs4729655    T    C    280.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=25.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497859    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:314,27,0
7    100731829    rs6948536    T    C    948.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_AMINO_ACID_CHANGE=A412;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100730593_100733909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306085    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:982,78,0
7    100775087    .    A    AAAC    1792.22    PASS    AC=2;AF=1.00;AN=2;DP=38;FS=0.0;HRun=0;HaplotypeScore=153.1906;IndelType=I;MQ=57.75;MQ0=0;QD=47.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441467    GT:AD:DP:GQ:PL    1/1:11,25:38:96.22:1834,96,0
7    100776931    rs2227684    G    A    533.57    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=3.54;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=19.06;ReadPosRankSum=-0.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441467    GT:AD:DP:GQ:PL    0/1:10,18:28:99:564,0,253
7    100777267    rs2070682    T    C    31.81    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.404;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.43;MQ0=0;MQRankSum=1.109;QD=2.65;ReadPosRankSum=0.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441467    GT:AD:DP:GQ:PL    0/1:9,3:12:61.80:62,0,329
7    100780176    rs2227694    A    G    320.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223095    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:354,30,0
7    100781084    rs11178    T    C    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223095    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    100781413    rs7241    T    C    592.09    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.808;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.0;MQ0=0;MQRankSum=-0.53;QD=14.1;ReadPosRankSum=1.019;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536888    GT:AD:DP:GQ:PL    0/1:19,23:42:99:622,0,522
7    100781445    rs7242    T    G    571.98    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=1.311;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.835;QD=22.88;ReadPosRankSum=-0.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536888    GT:AD:DP:GQ:PL    0/1:8,17:25:99:602,0,201
7    100799781    .    G    A    199.56    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=15.35;ReadPosRankSum=-1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337619    GT:AD:DP:GQ:PL    0/1:6,7:13:99:230,0,212
7    100800131    rs4727481    T    C    180.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337619    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:214,18,0
7    100800635    rs2074686    G    A    798.08    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.994;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=59.56;MQ0=0;MQRankSum=0.786;QD=15.06;ReadPosRankSum=-1.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337619    GT:AD:DP:GQ:PL    0/1:23,29:53:99:828,0,663
7    100802316    rs6954408    C    T    988.50    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.974;DB;DP=65;Dels=0.0;FS=1.001;HRun=2;HaplotypeScore=1.8519;MQ=59.29;MQ0=0;MQRankSum=-0.748;QD=15.21;ReadPosRankSum=-0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249330    GT:AD:DP:GQ:PL    0/1:28,37:65:99:1018,0,858
7    100803614    rs2074683    C    T    56.05    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.23;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249330    GT:AD:DP:GQ:PL    0/1:6,3:9:86.05:86,0,185
7    100803689    rs35208462    C    T    359.07    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.062;DB;DP=30;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=1.6643;MQ=59.23;MQ0=0;MQRankSum=2.224;QD=11.97;ReadPosRankSum=-1.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249330    GT:AD:DP:GQ:PL    0/1:16,14:30:99:389,0,540
7    100803729    rs73183986    A    G    492.45    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.41;MQ0=0;MQRankSum=-0.258;QD=12.63;ReadPosRankSum=-0.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249330    GT:AD:DP:GQ:PL    0/1:19,20:39:99:522,0,549
7    100804140    rs1048303    C    T    211.97    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.533;QD=16.31;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249330    GT:AD:DP:GQ:PL    0/1:5,8:13:99:242,0,168
7    100815279    rs740103    G    A    31.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.33;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443096    GT:AD:DP:GQ:PL    0/1:4,2:6:61.97:62,0,122
7    100816527    rs2009973    A    G    360.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443096    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:393,33,0
7    100818101    rs733965    A    G    565.39    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.611;DB;DP=38;Dels=0.0;FS=1.512;HRun=0;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;MQRankSum=0.931;QD=14.88;ReadPosRankSum=-0.843;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300303    GT:AD:DP:GQ:PL    0/1:16,22:38:99:595,0,479
7    100818193    rs2015923    G    C    251.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300303    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
7    100841285    rs1004242    T    C    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379421    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
7    100841389    rs2158612    A    C    236.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379421    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:270,21,0
7    100855107    rs79137018    G    A    99.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=9.91;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414785    GT:AD:DP:GQ:PL    0/1:6,4:10:99:129,0,183
7    100859234    rs35159414    G    A    317.88    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.724;DB;DP=24;Dels=0.0;FS=7.991;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.215;QD=13.25;ReadPosRankSum=0.215;SNPEFF_AMINO_ACID_CHANGE=D190;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100859189_100859301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223127    GT:AD:DP:GQ:PL    0/1:11,13:24:99:348,0,223
7    100861213    rs17319250    T    C    654.70    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.67;DB;DP=43;Dels=0.0;FS=6.807;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=15.23;ReadPosRankSum=-2.323;SNPEFF_AMINO_ACID_CHANGE=Q13R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100861130_100861275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414785    GT:AD:DP:GQ:PL    0/1:17,26:43:99:685,0,485
7    100861452    rs11769624    T    C    577.10    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.41;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.709;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=13.12;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456079    GT:AD:DP:GQ:PL    0/1:21,23:44:99:607,0,602
7    100861870    rs2072168    G    T    237.75    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.757;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.8247;MQ=60.0;MQ0=0;MQRankSum=-0.503;QD=8.49;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305105    GT:AD:DP:GQ:PL    0/1:18,10:28:99:268,0,349
7    100865720    rs80231266    A    AG    453.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=27.8743;IndelType=I;MQ=62.65;MQ0=0;QD=37.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305105    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:496,36,0
7    100865847    rs10953329    T    C    971.99    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.691;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=-1.235;QD=12.79;ReadPosRankSum=0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305105    GT:AD:DP:GQ:PL    0/1:39,37:76:99:1002,0,1155
7    100867295    rs12410    A    G    284.75    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.406;QD=7.91;ReadPosRankSum=-0.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461205    GT:AD:DP:GQ:PL    0/1:22,14:36:99:315,0,720
7    100875772    rs1047319    T    G    226.78    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=17;Dels=0.0;FS=2.062;HRun=2;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.146;QD=13.34;ReadPosRankSum=-1.903;SNPEFF_AMINO_ACID_CHANGE=P147;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_100875769_100875796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414035    GT:AD:DP:GQ:PL    0/1:7,10:17:99:257,0,235
7    100877456    rs2302428    T    C    182.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.95;MQ0=0;MQRankSum=0.323;QD=13.02;ReadPosRankSum=0.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433422    GT:AD:DP:GQ:PL    0/1:8,6:14:99:212,0,162
7    100958270    rs11544858    T    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468833    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
7    101063059    rs10254310    G    A    156.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
7    101063403    rs11767330    G    T    630.59    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=27;Dels=0.0;FS=1.983;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.133;QD=23.36;ReadPosRankSum=-0.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    0/1:8,19:27:99:661,0,203
7    101063487    rs11767356    G    A    202.24    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=53.95;MQ0=0;MQRankSum=0.747;QD=25.28;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    0/1:1,7:8:6.53:232,0,7
7    101090831    rs17135418    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    101126281    rs17384795    T    C    61.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.83;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    0/1:6,3:9:91.50:91,0,220
7    101126347    rs34682212    C    T    288.08    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.23;DB;DP=28;Dels=0.0;FS=5.764;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.983;QD=10.29;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    0/1:18,10:28:99:318,0,588
7    101126511    rs35677699    C    T    140.48    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.831;QD=11.71;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    0/1:7,5:12:99:170,0,209
7    101126604    rs28693638    A    G    77.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.45;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:107,0,68
7    101126626    rs7788971    A    C    39.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.81;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    0/1:2,3:5:66.70:69,0,67
7    101196488    rs12674244    T    C    674.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:708,60,0
7    101196688    rs13235234    C    T    1306.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1340,99,0
7    101196756    rs3800980    A    G    509.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:543,42,0
7    101199257    rs4729728    G    A    223.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;QD=22.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    1/1:0,10:10:24.04:257,24,0
7    101199258    rs117290094    C    T    41.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=4.2;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    0/1:6,4:10:71.97:72,0,216
7    101200628    rs11768650    C    A    851.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.77;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    1/1:0,28:28:69.18:884,69,0
7    101200669    rs36008849    A    AG    1769.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=2;HaplotypeScore=149.5045;IndelType=I;MQ=60.77;MQ0=0;QD=42.14;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_101200651_101200670;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000313669    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1812,126,0
7    101200835    rs7809926    A    G    703.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=EMID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473628    GT:AD:DP:GQ:PL    1/1:0,24:24:54.17:736,54,0
7    101265350    rs4263675    T    C    921.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9789;MQ=58.59;MQ0=0;QD=27.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223167    GT:AD:DP:GQ:PL    1/1:0,33:33:75.23:954,75,0
7    101266379    rs7794055    T    C    513.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223167    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:547,42,0
7    101267435    rs876825    T    C    1033.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223167    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1067,78,0
7    101459147    rs190979222    C    T    81.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
7    101459161    rs28650922    T    C    33.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=11.25;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:65,6,0
7    101559302    rs10231075    C    G    467.42    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.063;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.63;MQ0=0;MQRankSum=-0.364;QD=7.54;ReadPosRankSum=0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    0/1:44,18:62:99:497,0,1609
7    101713567    rs377587    T    C    325.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=15.52;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    0/1:9,12:21:99:356,0,273
7    101713590    rs377612    T    C    354.48    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9833;MQ=59.23;MQ0=0;MQRankSum=0.436;QD=11.82;ReadPosRankSum=0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    0/1:14,16:30:99:384,0,388
7    101740606    rs1637257    T    G    1221.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=29.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1255,105,0
7    101740610    rs1734879    C    A    1331.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1365,105,0
7    101740827    rs10638510    T    TTC    1396.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=61.8296;IndelType=I;MQ=57.9;MQ0=1;QD=49.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:1,27:26:78.27:1439,78,0
7    101747575    rs201480    A    G    3743.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=2.5114;MQ=59.13;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,109:110:99:3744,286,0
7    101747593    rs72383330    G    GT    3215    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.101;DB;DP=140;FS=0.0;HRun=11;HaplotypeScore=760.1606;IndelType=I;MQ=59.44;MQ0=0;MQRankSum=-0.09;QD=22.96;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:23,114:140:99:3257,222,0
7    101754865    rs201493    T    C    204.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
7    101755060    rs9655774    A    G    655.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:688,51,0
7    101758564    rs78218172    C    T    368.24    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=42;Dels=0.0;FS=1.587;HRun=1;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.41;QD=8.77;ReadPosRankSum=-1.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497815    GT:AD:DP:GQ:PL    0/1:25,17:42:99:398,0,872
7    101758584    rs201501    G    A    1096.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.621;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.503;QD=34.27;ReadPosRankSum=-1.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497815    GT:AD:DP:GQ:PL    1/1:1,31:32:47.63:1130,48,0
7    101801660    rs7805317    G    A    90.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
7    101837149    rs11540899    G    A    1080.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=P333;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_101837122_101837170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425244    GT:AD:DP:GQ:PL    1/1:0,32:32:81.27:1114,81,0
7    101840716    rs10808119    G    A    115.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
7    101843536    rs11413053    A    AT    269.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=10;HaplotypeScore=68.66;IndelType=I;MQ=56.28;MQ0=0;QD=20.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:2,11:13:30.07:312,30,0
7    101844851    rs60987662    A    G    3176.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DB;DP=114;Dels=0.0;FS=2.737;HRun=0;HaplotypeScore=4.361;MQ=57.32;MQ0=0;MQRankSum=1.286;QD=27.86;ReadPosRankSum=0.526;SNPEFF_AMINO_ACID_CHANGE=P600;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_101844640_101845484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556210    GT:AD:DP:GQ:PL    1/1:2,112:114:99:3209,208,0
7    101870599    rs430841    A    G    2962.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,94:94:99:2996,241,0
7    101882503    rs62484935    T    C    444.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292535    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:477,36,0
7    101916647    rs813000    A    G    493.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=A376;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_101916637_101916764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425244    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:527,42,0
7    101916798    rs2974957    C    A    364.32    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.013;DB;DP=28;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.889;QD=13.01;ReadPosRankSum=-0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292538    GT:AD:DP:GQ:PL    0/1:13,15:28:99:394,0,346
7    101917521    rs803064    G    A    314.08    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.231;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.341;QD=7.48;ReadPosRankSum=-0.289;SNPEFF_AMINO_ACID_CHANGE=A418T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_101917515_101917581;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425244    GT:AD:DP:GQ:PL    0/1:27,15:42:99:344,0,724
7    101917647    rs712839    A    G    341.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292538    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:374,27,0
7    101917772    rs712840    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292538    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    101923315    rs3831764    T    TC    983.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=4;HaplotypeScore=49.5726;IndelType=I;MQ=61.34;MQ0=0;QD=40.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393824    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:1025,72,0
7    101925065    rs803069    G    T    152.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=16.95;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292538    GT:AD:DP:GQ:PL    0/1:4,5:9:99:183,0,136
7    101925338    rs2257738    A    G    185.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292538    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:218,18,0
7    101926087    rs73712454    G    T    46.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9873;MQ=52.05;MQ0=0;MQRankSum=-0.718;QD=2.56;ReadPosRankSum=-0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292538    GT:AD:DP:GQ:PL    0/1:12,6:18:76.11:76,0,311
7    101926228    rs803070    T    C    275.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CUX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292538    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
7    101949878    rs712843    A    T    70.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306803    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
7    101957518    rs2023407    C    A    119.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306803    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
7    101967698    rs803103    C    A    7624.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=248;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7206;MQ=37.68;MQ0=8;QD=30.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTA-313A17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433904    GT:AD:DP:GQ:PL    1/1:0,248:248:99:7625,608,0
7    101967830    rs142515907    G    A    65.97    QDFilter2    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=92;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=47.68;MQ0=2;MQRankSum=-3.151;QD=0.72;ReadPosRankSum=0.974;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTA-313A17.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433904    GT:AD:DP:GQ:PL    0/1:75,17:92:95.96:96,0,2722
7    101977570    .    A    AT    76.23    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=6;FS=0.0;HRun=14;HaplotypeScore=43.145;IndelType=I;MQ=27.37;MQ0=0;MQRankSum=-0.736;QD=12.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363682    GT:AD:DP:GQ:PL    0/1:1,5:6:1.27:114,0,1
7    101977597    rs151014951    G    A    89.38    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.51;MQ0=0;MQRankSum=0.065;QD=5.96;ReadPosRankSum=0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363682    GT:AD:DP:GQ:PL    0/1:9,6:15:99:119,0,215
7    101977945    rs803118    C    T    3391.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.359;DB;DP=105;Dels=0.0;FS=4.245;HRun=2;HaplotypeScore=2.943;MQ=48.48;MQ0=0;MQRankSum=-0.611;QD=32.0;ReadPosRankSum=-1.223;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363682    GT:AD:DP:GQ:PL    1/1:1,103:105:99:3392,237,0
7    101979718    .    CT    C    292.90    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=3;HaplotypeScore=32.3855;IndelType=D;MQ=50.9;MQ0=0;QD=24.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTA-313A17.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432573    GT:AD:DP:GQ:PL    1/1:3,9:12:27.08:335,27,0
7    101987656    rs803081    A    G    1007.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=102;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=17.78;MQ0=31;QD=9.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTA-313A17.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432799    GT:AD:DP:GQ:PL    1/1:1,100:102:99:1040,102,0
7    102006327    rs139631105    C    G    54.85    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.46;MQ0=0;MQRankSum=-0.937;QD=6.86;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496391    GT:AD:DP:GQ:PL    0/1:3,4:8:81.71:85,0,82
7    102016156    rs10233461    A    G    65.78    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.474;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=41.85;MQ0=0;MQRankSum=-3.004;QD=3.87;ReadPosRankSum=-0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496391    GT:AD:DP:GQ:PL    0/1:12,5:17:95.78:96,0,418
7    102038153    rs72104665    CTGTG    C    299.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.512;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=204.5289;IndelType=D;MQ=58.06;MQ0=0;MQRankSum=0.914;QD=8.82;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354783    GT:AD:DP:GQ:PL    0/1:17,8:34:62.60:339,0,63
7    102038268    rs10268970    G    A    148.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.41;MQ0=0;MQRankSum=1.221;QD=18.56;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354783    GT:AD:DP:GQ:PL    0/1:3,5:8:88.68:178,0,89
7    102046070    rs6971258    T    A    274.69    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.615;DB;DP=24;Dels=0.0;FS=2.114;HRun=5;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.029;QD=11.45;ReadPosRankSum=1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477886    GT:AD:DP:GQ:PL    0/1:10,14:24:99:305,0,341
7    102086891    rs12672132    C    T    99.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=9.95;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356387    GT:AD:DP:GQ:PL    0/1:5,5:10:99:129,0,182
7    102098010    rs41275227    G    A    243.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=18;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.7887;MQ=57.64;MQ0=0;MQRankSum=0.352;QD=13.5;ReadPosRankSum=0.754;SNPEFF_AMINO_ACID_CHANGE=A247V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102096685_102098428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292566    GT:AD:DP:GQ:PL    0/1:6,12:18:99:273,0,183
7    102106201    rs3823658    G    A    287.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.041;QD=19.17;ReadPosRankSum=0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292616    GT:AD:DP:GQ:PL    0/1:5,10:15:99:318,0,120
7    102106306    rs11538919    A    G    536.47    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.897;DB;DP=47;Dels=0.0;FS=1.171;HRun=0;HaplotypeScore=0.8667;MQ=59.01;MQ0=0;MQRankSum=1.544;QD=11.41;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=K41;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102106264_102106498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292616    GT:AD:DP:GQ:PL    0/1:26,21:47:99:566,0,682
7    102108532    rs73189880    G    A    53.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=8.94;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=R234;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102108509_102108634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292616    GT:AD:DP:GQ:PL    0/1:3,3:6:83.65:84,0,105
7    102108686    rs113296404    T    C    59.65    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=5.96;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464107    GT:AD:DP:GQ:PL    0/1:5,4:10:89.64:90,0,126
7    102113093    rs3800988    T    C    66.06    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=6.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463739    GT:AD:DP:GQ:PL    0/1:7,4:11:96.05:96,0,216
7    102113563    rs71720377    TG    T    211.90    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.161;DB;DP=19;FS=0.0;HRun=9;HaplotypeScore=67.743;IndelType=D;MQ=59.93;MQ0=0;MQRankSum=1.256;QD=11.15;ReadPosRankSum=1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463739    GT:AD:DP:GQ:PL    0/1:7,12:19:99:251,0,157
7    102114006    rs7950    C    T    113.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.421;QD=14.14;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292616    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,105
7    102114151    rs75106520    T    A    163.16    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.307;QD=8.59;ReadPosRankSum=0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292616    GT:AD:DP:GQ:PL    0/1:13,6:19:99:193,0,386
7    102114749    rs56296803    C    G    400.65    MQFilter40    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.51;DB;DP=47;Dels=0.0;FS=1.736;HRun=0;HaplotypeScore=0.734;MQ=33.56;MQ0=3;MQRankSum=0.53;QD=8.52;ReadPosRankSum=-0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292616    GT:AD:DP:GQ:PL    0/1:26,21:47:99:431,0,613
7    102116484    .    G    C    32.13    MQFilter40;QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.67;MQ0=19;MQRankSum=-0.727;QD=1.4;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292616    GT:AD:DP:GQ:PL    0/1:17,6:23:15.67:62,0,16
7    102119179    .    G    C    205.75    MQFilter40    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=36.73;MQ0=2;MQRankSum=1.032;QD=8.95;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306682    GT:AD:DP:GQ:PL    0/1:15,8:23:99:236,0,241
7    102119410    rs7794729    T    G    150.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=18;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=51.01;MQ0=1;MQRankSum=-1.79;QD=8.34;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306682    GT:AD:DP:GQ:PL    0/1:11,7:18:99:180,0,306
7    102119570    .    C    G    39.27    MQFilter40    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.08;MQ0=2;MQRankSum=0.185;QD=2.8;ReadPosRankSum=1.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306682    GT:AD:DP:GQ:PL    0/1:11,3:14:69.26:69,0,180
7    102120834    .    A    G    197.94    MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.187;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.74;MQ0=41;MQRankSum=0.709;QD=3.19;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306682    GT:AD:DP:GQ:PL    0/1:34,28:62:95.15:228,0,95
7    102120875    .    G    T    75.91    MQFilter40;QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.22;MQ0=100;MQRankSum=-0.533;QD=0.67;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306682    GT:AD:DP:GQ:PL    0/1:86,28:114:67.53:106,0,68
7    102136550    rs77782294    G    A    530.80    MQFilter40    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DB;DP=88;Dels=0.0;FS=10.342;HRun=0;HaplotypeScore=0.8321;MQ=20.4;MQ0=28;MQRankSum=-4.719;QD=6.03;ReadPosRankSum=1.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306682    GT:AD:DP:GQ:PL    0/1:11,77:88:99:561,0,259
7    102194966    .    G    A    114.67    MQFilter40;QDFilter2    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.4;DP=204;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.0;MQ=9.79;MQ0=126;MQRankSum=0.521;QD=0.56;ReadPosRankSum=0.098;SNPEFF_AMINO_ACID_CHANGE=K107;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102194806_102195024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507918    GT:AD:DP:GQ:PL    0/1:118,86:204:99:145,0,103
7    102210320    rs146014961    G    C    387.24    MQFilter40;QDFilter2    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.077;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=10.77;MQ0=180;MQRankSum=1.81;QD=1.55;ReadPosRankSum=0.579;SNPEFF_AMINO_ACID_CHANGE=I34M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102210282_102210371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POLR2J3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511313    GT:AD:DP:GQ:PL    0/1:175,75:250:99:417,0,707
7    102212739    rs112662161    G    A    81.13    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.053;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=42.35;MQ0=0;MQRankSum=1.423;QD=4.77;ReadPosRankSum=-2.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379336    GT:AD:DP:GQ:PL    0/1:12,5:17:99:111,0,377
7    102212758    rs62483005    G    T    146.83    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=37.74;MQ0=2;MQRankSum=-0.713;QD=6.67;ReadPosRankSum=1.506;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379336    GT:AD:DP:GQ:PL    0/1:14,8:22:99:177,0,346
7    102213012    rs11487073    C    T    470.27    MQFilter40    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.316;DB;DP=115;Dels=0.0;FS=0.994;HRun=0;HaplotypeScore=0.0;MQ=25.91;MQ0=13;MQRankSum=0.32;QD=4.09;ReadPosRankSum=0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379336    GT:AD:DP:GQ:PL    0/1:71,44:115:99:500,0,1243
7    102213039    .    T    C    76.39    MQFilter40;QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=1.755;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6671;MQ=29.61;MQ0=5;MQRankSum=0.136;QD=0.87;ReadPosRankSum=-0.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379336    GT:AD:DP:GQ:PL    0/1:77,11:88:99:106,0,1557
7    102213065    rs143585425    A    T    370.97    MQFilter40    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.937;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=34.82;MQ0=1;MQRankSum=-0.852;QD=6.08;ReadPosRankSum=-1.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379336    GT:AD:DP:GQ:PL    0/1:39,22:61:99:401,0,1011
7    102213137    rs62483008    C    A    138.72    MQFilter40    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.14;MQ0=1;MQRankSum=-2.313;QD=9.91;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379336    GT:AD:DP:GQ:PL    0/1:5,9:14:99:169,0,125
7    102233191    .    G    A    87.96    MQFilter40    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DP=14;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=27.5;MQ0=0;MQRankSum=-2.8;QD=6.28;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518123    GT:AD:DP:GQ:PL    0/1:5,9:14:74.10:118,0,74
7    102235910    .    G    C    58.70    MQFilter40;QDFilter2    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.646;DP=44;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=11.4;MQ0=26;MQRankSum=-0.69;QD=1.33;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518123    GT:AD:DP:GQ:PL    0/1:20,24:44:35.35:89,0,35
7    102246447    .    C    T    111.88    MQFilter40    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.547;DP=55;Dels=0.0;FS=6.396;HRun=1;HaplotypeScore=0.0;MQ=31.22;MQ0=15;MQRankSum=-2.296;QD=2.03;ReadPosRankSum=0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521892    GT:AD:DP:GQ:PL    0/1:39,16:55:99:142,0,635
7    102246500    rs144574884    A    G    249.99    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=42;Dels=0.0;FS=4.129;HRun=2;HaplotypeScore=0.0;MQ=26.2;MQ0=12;MQRankSum=1.465;QD=5.95;ReadPosRankSum=1.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521892    GT:AD:DP:GQ:PL    0/1:28,14:42:99:280,0,270
7    102309418    rs74556368    C    A    66.21    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.9;MQ0=78;QD=0.75;SNPEFF_AMINO_ACID_CHANGE=K28N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102309362_102309451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2J2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333432    GT:AD:DP:GQ:PL    1/1:0,87:87:11.97:99,12,0
7    102312080    .    T    C    200.10    MQFilter40    AC=2;AF=1.00;AN=2;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.31;MQ0=18;QD=6.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC105052.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542270    GT:AD:DP:GQ:PL    1/1:16,17:33:26.99:233,27,0
7    102319079    .    G    A    103.68    MQFilter40;QDFilter2    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.02;MQ0=126;MQRankSum=0.986;QD=0.72;ReadPosRankSum=0.789;SNPEFF_AMINO_ACID_CHANGE=H75;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102318939_102319318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC105052.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542270    GT:AD:DP:GQ:PL    0/1:76,68:144:99:134,0,361
7    102343967    rs4729850    A    G    263.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.9;MQ0=1;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452220    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:296,24,0
7    102389833    rs28695887    G    C    91.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.09;MQ0=0;QD=18.28;SNPEFF_AMINO_ACID_CHANGE=G60A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102389475_102389864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM185A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409231    GT:AD:DP:GQ:PL    1/1:0,5:5:12:124,12,0
7    102391974    rs77425251    T    A    261.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.73;MQ0=1;QD=26.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM185A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409231    GT:AD:DP:GQ:PL    1/1:0,10:10:27.05:294,27,0
7    102392358    rs149881665    C    T    328.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=20.91;MQ0=12;QD=13.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM185A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409231    GT:AD:DP:GQ:PL    1/1:0,25:25:33.08:361,33,0
7    102398410    .    C    CT    619.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.491;DP=31;FS=0.0;HRun=11;HaplotypeScore=94.1482;IndelType=I;MQ=38.51;MQ0=5;MQRankSum=-0.048;QD=16.74;ReadPosRankSum=-0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM185A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418198    GT:AD:DP:GQ:PL    1/1:11,25:31:31.50:662,32,0
7    102412901    rs2539288    T    C    2046.67    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.137;DB;DP=231;Dels=0.0;FS=1.097;HRun=0;HaplotypeScore=0.0;MQ=40.9;MQ0=7;MQRankSum=-8.982;QD=8.86;ReadPosRankSum=0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM185A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409231    GT:AD:DP:GQ:PL    0/1:117,114:231:99:2077,0,3465
7    102574999    rs3832497    TGAA    T    1789.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=177.7653;IndelType=D;MQ=58.24;MQ0=0;QD=42.61;SNPEFF_AMINO_ACID_CHANGE=E214-;SNPEFF_CODON_CHANGE=gaa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_7_102574221_102575132;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249377    GT:AD:DP:GQ:PL    1/1:3,39:42:99:1832,117,0
7    102616469    rs2228687    G    A    2423.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313221    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2457,181,0
7    102668001    rs7805950    A    C    1512.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=35.17;SNPEFF_AMINO_ACID_CHANGE=I164M;SNPEFF_CODON_CHANGE=atT/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102667896_102668005;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440067    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1545,114,0
7    102724372    rs4729871    A    T    1797.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=38.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323716    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1830,135,0
7    102732772    rs4729874    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323716    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
7    102739043    rs4729879    C    T    2771.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=28.95;MQ0=50;QD=18.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434153    GT:AD:DP:GQ:PL    1/1:29,121:150:99:2805,220,0
7    102743893    rs3181009    C    T    3474.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5741;MQ=59.47;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=D389N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_102743871_102744001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAPEPLD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341533    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3474,253,0
7    102755330    rs4729882    A    G    159.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=22.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAPEPLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341533    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:192,15,0
7    102760722    rs1974715    A    G    831.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAPEPLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341533    GT:AD:DP:GQ:PL    1/1:0,23:23:66.16:865,66,0
7    102760774    rs1558853    A    T    160.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAPEPLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341533    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
7    102825871    rs4317507    T    C    838.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.14;MQ0=0;QD=27.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPY19L2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312132    GT:AD:DP:GQ:PL    1/1:0,30:30:72.16:872,72,0
7    102874366    rs3987883    C    T    173.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.88;MQ0=2;QD=19.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPY19L2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312132    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:206,18,0
7    102880910    rs7804608    C    T    159.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA_pseudogene;SNPEFF_GENE_NAME=AC004668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480490    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
7    102881160    rs7804961    C    T    217.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA_pseudogene;SNPEFF_GENE_NAME=AC004668.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480490    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
7    102948040    rs11489600    T    C    1888.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249270    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1922,144,0
7    102957156    rs3948710    G    A    295.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537811    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
7    102985211    rs2074624    C    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_102985006_102985245;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379257    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
7    103007949    rs4520097    A    C    1608.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=R175;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_103007860_103008062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544811    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1642,123,0
7    103008576    .    A    T    210.25    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.755;QD=11.07;ReadPosRankSum=0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339444    GT:AD:DP:GQ:PL    0/1:9,10:19:99:240,0,245
7    103018016    rs10273883    A    G    420.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306312    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:453,36,0
7    103019613    rs12705120    A    G    1005.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.2772;MQ=58.76;MQ0=0;QD=29.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306312    GT:AD:DP:GQ:PL    1/1:0,34:34:87.24:1038,87,0
7    103033573    rs13240456    T    C    240.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306312    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
7    103138517    rs2711885    C    G    860.79    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=0.066;DB;DP=51;Dels=0.0;FS=1.242;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.066;QD=16.88;ReadPosRankSum=-0.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343529    GT:AD:DP:GQ:PL    0/1:23,28:51:99:891,0,732
7    103155545    rs188334529    G    A    140.88    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.377;QD=10.84;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343529    GT:AD:DP:GQ:PL    0/1:7,6:13:99:171,0,248
7    103162370    rs10282605    C    T    1039.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478148    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1072,81,0
7    103175965    rs362706    C    T    711.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343529    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:744,57,0
7    103176052    rs362707    C    T    117.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343529    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
7    103197578    rs141387255    C    T    180.15    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.925;QD=6.93;ReadPosRankSum=-0.809;SNPEFF_AMINO_ACID_CHANGE=L1881;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_103197424_103197606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343529    GT:AD:DP:GQ:PL    0/1:19,7:26:99:210,0,633
7    103557697    rs711443    A    G    1185.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=11.0871;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343529    GT:AD:DP:GQ:PL    1/1:0,33:33:90.30:1219,90,0
7    103575173    rs3808019    C    T    2286.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.81;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343529    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2320,175,0
7    103629803    .    T    TGCCGCC    408.94    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=0;HaplotypeScore=72.7917;IndelType=I;MQ=46.8;MQ0=0;QD=34.08;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_103629578_103629963;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343529    GT:AD:DP:GQ:PL    1/1:5,6:12:18.01:451,18,0
7    103835732    rs2307400    C    T    1055.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297431    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:1088,81,0
7    103838120    rs13238183    A    C    671.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448563    GT:AD:DP:GQ:PL    1/1:0,18:19:54.17:705,54,0
7    103844557    rs2245659    T    G    847.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297431    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:880,66,0
7    104376929    rs4730039    C    A    69.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.64;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHFPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401970    GT:AD:DP:GQ:PL    0/1:3,3:6:91.50:100,0,92
7    104376954    rs113581042    C    CCA    271.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=49.279;IndelType=I;MQ=57.39;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHFPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401970    GT:AD:DP:GQ:PL    1/1:2,6:9:21.06:314,21,0
7    104377453    rs4236573    A    C    380.39    PASS    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.293;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.934;QD=25.36;ReadPosRankSum=-1.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHFPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401970    GT:AD:DP:GQ:PL    0/1:2,13:15:40.11:410,0,40
7    104747899    rs117986340    G    T    860.70    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.512;DB;DP=75;Dels=0.0;FS=1.941;HRun=2;HaplotypeScore=0.9665;MQ=59.38;MQ0=0;MQRankSum=0.559;QD=11.48;ReadPosRankSum=0.033;SNPEFF_AMINO_ACID_CHANGE=G54C;SNPEFF_CODON_CHANGE=Ggt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_104747809_104748372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334914    GT:AD:DP:GQ:PL    0/1:43,31:75:99:891,0,1413
7    104748391    rs150402862    T    C    101.58    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4203;MQ=54.68;MQ0=0;MQRankSum=0.295;QD=5.35;ReadPosRankSum=1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493638    GT:AD:DP:GQ:PL    0/1:12,7:19:99:132,0,247
7    104758250    rs6968355    T    C    275.22    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.439;QD=16.19;ReadPosRankSum=0.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257745    GT:AD:DP:GQ:PL    0/1:7,10:17:99:305,0,241
7    104767295    rs3815256    A    G    237.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357311    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:271,24,0
7    104783306    rs2240465    T    G    359.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357311    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:393,30,0
7    104785779    rs7780887    T    G    351.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.69;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357311    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:385,30,0
7    104787325    rs10269027    G    A    37.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357311    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
7    104800939    rs4730071    C    T    1618.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482897    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1651,120,0
7    104808386    rs60505353    G    GA    304.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=5;HaplotypeScore=21.0543;IndelType=I;MQ=60.98;MQ0=0;QD=27.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357311    GT:AD:DP:GQ:PL    1/1:2,9:11:27.08:347,27,0
7    104846173    rs55712418    A    G    162    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357311    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
7    104846375    .    A    AAC    3163.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.103;DP=88;FS=7.568;HRun=0;HaplotypeScore=227.3915;IndelType=I;MQ=60.57;MQ0=0;MQRankSum=1.477;QD=35.95;ReadPosRankSum=0.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357311    GT:AD:DP:GQ:PL    1/1:18,70:88:99:3205,142,0
7    105103372    rs11771875    C    G    240.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PUS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356362    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:274,21,0
7    105106005    rs818459    T    C    31.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PUS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478208    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
7    105108632    rs2692430    G    A    362.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=36.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PUS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478208    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:396,30,0
7    105122891    rs113376472    TA    T    242.08    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=0.447;DB;DP=58;FS=8.363;HRun=16;HaplotypeScore=330.0632;IndelType=D;MQ=55.83;MQ0=0;MQRankSum=1.458;QD=4.17;ReadPosRankSum=0.938;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PUS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356362    GT:AD:DP:GQ:PL    0/1:34,22:58:99:281,0,237
7    105146593    rs11421080    A    AT    1812.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=5;HaplotypeScore=111.5167;IndelType=I;MQ=60.41;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PUS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356362    GT:AD:DP:GQ:PL    1/1:2,47:49:99:1854,141,0
7    105401742    rs138677709    C    T    360.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.023;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.482;QD=12.86;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419735    GT:AD:DP:GQ:PL    0/1:14,14:28:99:390,0,506
7    105517078    rs212428    C    T    99.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6647;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=9.95;ReadPosRankSum=0.729;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN7L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318724    GT:AD:DP:GQ:PL    0/1:5,4:10:85.43:129,0,85
7    105621512    rs193795    G    T    3423    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7262;MQ=59.78;MQ0=0;QD=33.23;SNPEFF_AMINO_ACID_CHANGE=L116;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_105621414_105621579;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317716    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3423,259,0
7    105658451    rs6967330    G    A    918.18    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.255;DB;DP=71;Dels=0.0;FS=4.79;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=-0.675;QD=12.93;ReadPosRankSum=0.383;SNPEFF_AMINO_ACID_CHANGE=C441Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_105658292_105658518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000478080    GT:AD:DP:GQ:PL    0/1:41,30:71:99:948,0,1236
7    105658460    rs73195662    C    G    783.39    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.611;DB;DP=75;Dels=0.0;FS=0.915;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.571;QD=10.45;ReadPosRankSum=0.394;SNPEFF_AMINO_ACID_CHANGE=T444S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_105658292_105658518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000478080    GT:AD:DP:GQ:PL    0/1:44,31:75:99:813,0,1299
7    105662690    rs10258293    T    C    2724.92    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.472;DB;DP=240;DS;Dels=0.0;FS=1.587;HRun=0;HaplotypeScore=3.6891;MQ=59.81;MQ0=0;MQRankSum=-0.64;QD=11.35;ReadPosRankSum=-1.15;SNPEFF_AMINO_ACID_CHANGE=N536;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_105662644_105662894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000478080    GT:AD:DP:GQ:PL    0/1:141,99:240:99:2755,0,4247
7    105663454    rs55805557    A    G    31.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.39;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317716    GT:AD:DP:GQ:PL    0/1:3,2:5:61.92:62,0,72
7    105668105    .    T    TA    174.50    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=2.35;DP=36;FS=1.585;HRun=13;HaplotypeScore=143.3163;IndelType=I;MQ=58.07;MQ0=0;MQRankSum=0.529;QD=4.72;ReadPosRankSum=-0.699;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000542731    GT:AD:DP:GQ:PL    0/1:25,10:36:99:214,0,259
7    105668176    rs73195669    A    G    177.45    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=28;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=2.4115;MQ=57.13;MQ0=0;MQRankSum=-0.443;QD=6.12;ReadPosRankSum=-0.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317716    GT:AD:DP:GQ:PL    0/1:19,9:28:99:207,0,594
7    105668683    rs73195673    C    A    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317716    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:70,0,28
7    105668819    rs73195674    T    G    651.12    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.411;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=58.81;MQ0=0;MQRankSum=0.212;QD=16.7;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317716    GT:AD:DP:GQ:PL    0/1:17,22:39:99:681,0,546
7    105668973    rs73195675    T    C    1219.09    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.188;DB;DP=67;Dels=0.0;FS=5.125;HRun=1;HaplotypeScore=0.9578;MQ=59.66;MQ0=0;MQRankSum=-1.332;QD=18.2;ReadPosRankSum=-0.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDHR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317716    GT:AD:DP:GQ:PL    0/1:26,41:67:99:1249,0,827
7    105732429    rs176485    T    C    198.42    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.78;MQ0=0;MQRankSum=-1.528;QD=10.44;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011473    GT:AD:DP:GQ:PL    0/1:11,8:19:99:228,0,338
7    105733619    rs176486    G    A    773.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011473    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:806,60,0
7    105738368    rs12705333    T    C    290.27    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.354;QD=9.07;ReadPosRankSum=0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011473    GT:AD:DP:GQ:PL    0/1:21,11:32:99:320,0,594
7    105739732    rs176492    C    T    766.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.121;DB;DP=49;Dels=0.0;FS=3.539;HRun=0;HaplotypeScore=1.9552;MQ=60.0;MQ0=0;MQRankSum=1.606;QD=15.64;ReadPosRankSum=-0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011473    GT:AD:DP:GQ:PL    0/1:21,28:49:99:797,0,707
7    105739940    rs59217    T    C    73.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011473    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
7    105752555    rs2240473    G    A    66.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=7.34;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011473    GT:AD:DP:GQ:PL    0/1:5,4:9:96.09:96,0,137
7    105752691    rs176501    G    A    422.76    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.02;DB;DP=31;Dels=0.0;FS=1.477;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.264;QD=13.21;ReadPosRankSum=-0.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011473    GT:AD:DP:GQ:PL    0/1:12,19:31:99:453,0,312
7    105752820    rs176502    G    A    38.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011473    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:69,0,34
7    105903789    rs144888107    G    C    180.92    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=19;Dels=0.0;FS=6.419;HRun=1;HaplotypeScore=0.0;MQ=54.89;MQ0=0;MQRankSum=-0.867;QD=9.52;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467730    GT:AD:DP:GQ:PL    0/1:11,8:19:99:211,0,341
7    105903904    rs2302559    T    C    2148.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.5;MQ0=8;QD=25.58;SNPEFF_AMINO_ACID_CHANGE=S301;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_105903838_105904063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222553    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2182,180,0
7    105904150    rs4730153    A    G    264.76    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=1.021;QD=12.61;ReadPosRankSum=0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467730    GT:AD:DP:GQ:PL    0/1:11,10:21:99:295,0,380
7    105909828    rs35479106    C    CT    150.47    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=23;FS=0.0;HRun=14;HaplotypeScore=108.1435;IndelType=I;MQ=54.36;MQ0=0;MQRankSum=1.664;QD=6.54;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393618    GT:AD:DP:GQ:PL    0/1:14,8:23:21.31:189,0,21
7    105909890    rs2072457    G    A    70.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=10.07;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393618    GT:AD:DP:GQ:PL    0/1:3,4:7:99:100,0,110
7    105910666    rs6947766    C    T    99.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.38;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424768    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,145
7    105912444    rs28454100    A    C    267.06    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.718;DB;DP=28;Dels=0.0;FS=2.341;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.046;QD=9.54;ReadPosRankSum=0.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424768    GT:AD:DP:GQ:PL    0/1:15,13:28:99:297,0,544
7    105912865    rs112487390    G    C    612.46    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.435;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.875;QD=25.52;ReadPosRankSum=-0.875;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417537    GT:AD:DP:GQ:PL    0/1:6,18:24:99:642,0,121
7    105915192    rs41276169    T    G    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417537    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
7    106272759    rs55986309    G    C    2594.17    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=147;Dels=0.0;FS=5.601;HRun=1;HaplotypeScore=4.8783;MQ=59.05;MQ0=0;MQRankSum=0.609;QD=17.65;ReadPosRankSum=-1.312;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTB-111H14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485282    GT:AD:DP:GQ:PL    0/1:62,85:147:99:2624,0,1778
7    106508978    rs849389    A    G    1399.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=P324;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_106507995_106510001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359195    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1432,120,0
7    106508987    rs849390    T    C    1370.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.42;MQ0=0;QD=34.27;SNPEFF_AMINO_ACID_CHANGE=D327;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_106507995_106510001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359195    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1404,108,0
7    106519943    rs849370    T    C    786.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359195    GT:AD:DP:GQ:PL    1/1:0,25:25:60.18:819,60,0
7    106523446    rs849397    A    G    3307.20    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=249;DS;Dels=0.0;FS=1.046;HRun=0;HaplotypeScore=5.5882;MQ=54.07;MQ0=0;MQRankSum=1.347;QD=13.28;ReadPosRankSum=1.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466738    GT:AD:DP:GQ:PL    0/1:132,116:249:99:3307,0,3621
7    106524411    rs849398    T    G    32.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.79;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3CG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466738    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:62,0,34
7    106786550    rs10253291    C    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265717    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    106786952    rs3729876    T    C    725.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488792    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:759,57,0
7    106787065    rs3729877    T    G    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488792    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
7    106793505    rs41276181    C    A    541.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265717    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:575,45,0
7    106799997    rs257376    G    A    1559.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=30.59;SNPEFF_AMINO_ACID_CHANGE=T396;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_106799894_106802255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539794    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1593,117,0
7    106826381    rs7794598    C    T    827.56    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=4.004;DB;DP=49;Dels=0.0;FS=1.665;HRun=0;HaplotypeScore=3.1442;MQ=57.61;MQ0=0;MQRankSum=0.838;QD=16.89;ReadPosRankSum=0.776;SNPEFF_AMINO_ACID_CHANGE=H170;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_106826246_106826387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000498408    GT:AD:DP:GQ:PL    0/1:23,26:49:99:858,0,560
7    106826439    rs7794965    G    A    194.43    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=17;Dels=0.0;FS=3.233;HRun=2;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=1.376;QD=11.44;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464009    GT:AD:DP:GQ:PL    0/1:10,7:17:99:224,0,275
7    106827213    rs73187319    A    T    113.21    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.17;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464009    GT:AD:DP:GQ:PL    0/1:3,4:7:62.59:143,0,63
7    106844281    rs12537730    T    C    36.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
7    106851754    rs1018946    T    C    590.02    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=2.803;DB;DP=26;Dels=0.0;FS=2.623;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.593;QD=22.69;ReadPosRankSum=0.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:9,17:26:99:620,0,266
7    106876746    .    C    CT    116.08    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=10;FS=0.0;HRun=11;HaplotypeScore=42.7338;IndelType=I;MQ=60.94;MQ0=0;MQRankSum=1.589;QD=11.61;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462342    GT:AD:DP:GQ:PL    0/1:5,5:10:22.44:155,0,22
7    106897237    rs17349904    A    C    698.03    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=43;Dels=0.0;FS=4.525;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=1.127;QD=16.23;ReadPosRankSum=-0.868;SNPEFF_AMINO_ACID_CHANGE=V594;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_106897177_106897239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:16,26:43:99:728,0,413
7    106898895    .    T    TCTCTCA    431.08    PASS    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.781;DP=36;FS=0.0;HRun=0;HaplotypeScore=233.5581;IndelType=I;MQ=54.94;MQ0=0;MQRankSum=-0.664;QD=11.97;ReadPosRankSum=-0.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:30,5:36:99:470,0,1066
7    106938903    rs75254991    C    T    37.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.47;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,90
7    106965039    rs6466164    C    T    425.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:459,33,0
7    106965091    rs7807648    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    107002504    rs34087251    T    C    150.27    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.984;QD=10.02;ReadPosRankSum=-0.637;SNPEFF_AMINO_ACID_CHANGE=I365V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107002478_107002555;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:8,7:15:99:180,0,188
7    107002573    rs12536603    T    C    264.58    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=13;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.696;QD=20.35;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:5,8:13:99:295,0,158
7    107002806    rs2269970    A    G    994.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_AMINO_ACID_CHANGE=F330L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107002753_107002865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    1/1:0,35:35:75.23:1028,75,0
7    107053157    .    CA    C    73.30    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DP=12;FS=0.0;HRun=12;HaplotypeScore=28.8151;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.11;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:6,6:12:64.45:112,0,64
7    107114400    rs11453718    A    AT    180.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=8;HaplotypeScore=16.7601;IndelType=I;MQ=57.28;MQ0=0;QD=25.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473300    GT:AD:DP:GQ:PL    1/1:2,5:7:20.89:222,21,0
7    107167661    .    T    TA    59.64    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DP=13;FS=0.0;HRun=15;HaplotypeScore=72.0529;IndelType=I;MQ=59.06;MQ0=0;MQRankSum=0.779;QD=4.59;ReadPosRankSum=-0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468056    GT:AD:DP:GQ:PL    0/1:7,5:13:61.07:99,0,61
7    107188352    rs2712216    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469503    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    107188719    rs2066735    G    T    2823.39    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=1.844;DB;DP=192;Dels=0.0;FS=4.267;HRun=1;HaplotypeScore=3.3468;MQ=59.76;MQ0=0;MQRankSum=-1.45;QD=14.71;ReadPosRankSum=1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:95,97:192:99:2853,0,2786
7    107194911    rs2520270    C    A    182.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:215,18,0
7    107198405    rs2520272    A    T    1692.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1726,126,0
7    107204275    rs146391348    C    G    326.22    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.704;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7998;MQ=58.33;MQ0=0;MQRankSum=-0.849;QD=11.65;ReadPosRankSum=-0.607;SNPEFF_AMINO_ACID_CHANGE=A54P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107204248_107204959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297135    GT:AD:DP:GQ:PL    0/1:15,13:28:99:356,0,418
7    107207695    rs4730250    A    G    1707.71    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=2.138;DB;DP=101;Dels=0.0;FS=4.567;HRun=0;HaplotypeScore=3.8921;MQ=59.54;MQ0=0;MQRankSum=-0.392;QD=16.91;ReadPosRankSum=0.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUS4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467916    GT:AD:DP:GQ:PL    0/1:42,59:101:99:1738,0,1307
7    107217020    rs6957510    G    A    306    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=33;Dels=0.0;FS=6.034;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.821;QD=9.27;ReadPosRankSum=-0.095;SNPEFF_AMINO_ACID_CHANGE=R109Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107216811_107217037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUS4L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402620    GT:AD:DP:GQ:PL    0/1:22,11:33:99:336,0,604
7    107217068    rs3839819    TG    T    392.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=8;HaplotypeScore=68.1235;IndelType=D;MQ=60.57;MQ0=0;QD=20.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUS4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458611    GT:AD:DP:GQ:PL    1/1:3,16:19:45.07:435,45,0
7    107224565    rs7778250    C    A    178.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.11;MQ0=0;MQRankSum=-1.447;QD=17.81;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473124    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,134
7    107234351    rs73189577    C    G    507.36    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.299;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.095;QD=14.09;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005259    GT:AD:DP:GQ:PL    0/1:17,19:36:99:537,0,570
7    107253721    rs59650878    T    C    235.13    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=15.68;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005259    GT:AD:DP:GQ:PL    0/1:7,8:15:99:265,0,245
7    107255548    rs3801944    T    C    191.58    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=11.27;ReadPosRankSum=1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442065    GT:AD:DP:GQ:PL    0/1:10,7:17:99:222,0,337
7    107262558    rs2894475    T    A    266.60    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=26.66;ReadPosRankSum=-0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005259    GT:AD:DP:GQ:PL    0/1:2,8:10:46.92:297,0,47
7    107303622    rs2248464    A    T    1221.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265715    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1254,93,0
7    107303628    rs2248465    C    T    1279.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265715    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1313,99,0
7    107324113    rs2395911    G    T    244.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265715    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
7    107334661    rs2072065    C    T    61.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.41;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265715    GT:AD:DP:GQ:PL    0/1:1,3:4:30.62:92,0,31
7    107414314    rs17154420    T    G    55.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.103;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.893;QD=3.47;ReadPosRankSum=-1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469651    GT:AD:DP:GQ:PL    0/1:8,8:16:85.49:85,0,290
7    107414419    rs41669    A    G    1464.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_AMINO_ACID_CHANGE=L651;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107414365_107414598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340010    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1497,123,0
7    107416855    rs112441661    G    GT    942.95    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.267;DB;DP=53;FS=0.0;HRun=1;HaplotypeScore=122.0978;IndelType=I;MQ=59.54;MQ0=0;MQRankSum=1.217;QD=17.79;ReadPosRankSum=0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340010    GT:AD:DP:GQ:PL    0/1:28,25:53:99:982,0,838
7    107420005    rs34907697    T    C    75.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.57;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468551    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,108
7    107420354    rs10247487    C    T    67.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468551    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
7    107423907    rs41280236    T    C    133.89    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.3;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340010    GT:AD:DP:GQ:PL    0/1:8,5:13:99:164,0,297
7    107545322    rs117252390    T    A    261.18    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=26.12;ReadPosRankSum=0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460577    GT:AD:DP:GQ:PL    0/1:2,8:10:52.89:291,0,53
7    107575792    rs60166814    G    GT    187.84    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DB;DP=127;FS=25.506;HRun=26;HaplotypeScore=855.0333;IndelType=I;MQ=40.68;MQ0=0;MQRankSum=-1.369;QD=1.47;ReadPosRankSum=1.004;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417551    GT:AD:DP:GQ:PL    1/1:119,6:127:17.31:230,17,0
7    107580839    rs2158836    A    G    313.83    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=21;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.035;QD=14.94;ReadPosRankSum=-0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476039    GT:AD:DP:GQ:PL    0/1:11,10:21:99:344,0,354
7    107591762    rs139955747    C    G    212.01    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8737;MQ=59.07;MQ0=0;MQRankSum=0.615;QD=8.48;ReadPosRankSum=-1.727;SNPEFF_AMINO_ACID_CHANGE=T1100;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107591671_107591767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222399    GT:AD:DP:GQ:PL    0/1:14,11:25:99:242,0,377
7    107591914    rs2072208    A    G    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222399    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    107593989    rs20556    T    C    513.98    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.84;DB;DP=45;Dels=0.0;FS=3.289;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.621;QD=11.42;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=Q1022R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107593975_107594199;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222399    GT:AD:DP:GQ:PL    0/1:24,20:45:99:544,0,752
7    107601523    rs7788778    T    C    269.81    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=20.75;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222399    GT:AD:DP:GQ:PL    0/1:5,8:13:99:300,0,138
7    107601536    rs75874176    G    T    251.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=15.71;ReadPosRankSum=1.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222399    GT:AD:DP:GQ:PL    0/1:8,8:16:99:281,0,242
7    107613379    rs2701034    G    A    288.89    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.117;QD=18.06;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222399    GT:AD:DP:GQ:PL    0/1:7,9:16:99:319,0,241
7    107643521    rs2395935    T    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAMB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222399    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:74,6,0
7    107664429    rs1636944    G    A    93.30    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=6.22;ReadPosRankSum=-0.551;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388780    GT:AD:DP:GQ:PL    0/1:10,5:15:99:123,0,369
7    107664446    rs1616041    C    T    128.52    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=23;Dels=0.0;FS=2.105;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.438;QD=5.59;ReadPosRankSum=1.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388780    GT:AD:DP:GQ:PL    0/1:17,6:23:99:159,0,450
7    107664659    rs1636945    A    G    138.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=9.91;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388780    GT:AD:DP:GQ:PL    0/1:8,6:14:99:169,0,237
7    107667497    rs1732157    G    T    77.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.49;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475572    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:107,0,69
7    107671407    rs2528693    C    G    530.25    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.365;QD=13.95;ReadPosRankSum=-0.599;SNPEFF_AMINO_ACID_CHANGE=R1612S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107671251_107671424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    0/1:20,18:38:99:560,0,701
7    107677370    rs73424716    T    A    116.96    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8326;MQ=58.2;MQ0=0;MQRankSum=0.696;QD=9.0;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    0/1:8,5:13:99:147,0,244
7    107677984    rs1627354    G    A    1076.26    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.744;DB;DP=107;Dels=0.0;FS=6.927;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.136;QD=10.06;ReadPosRankSum=0.292;SNPEFF_AMINO_ACID_CHANGE=H1510Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107677833_107678040;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    0/1:65,42:107:99:1106,0,2145
7    107689844    rs10260756    G    T    888.53    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=69;Dels=0.0;FS=0.932;HRun=2;HaplotypeScore=0.8941;MQ=59.67;MQ0=0;MQRankSum=-0.825;QD=12.88;ReadPosRankSum=0.332;SNPEFF_AMINO_ACID_CHANGE=T1350N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107689771_107689976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    0/1:38,31:69:99:919,0,1180
7    107696289    rs17154865    C    T    683.27    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=1.859;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.164;QD=19.52;ReadPosRankSum=0.712;SNPEFF_AMINO_ACID_CHANGE=Q1181;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107696077_107696452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    0/1:12,23:35:99:713,0,378
7    107698612    rs12334173    C    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471677    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
7    107708373    rs73424749    C    T    1223.79    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.06;MQ0=0;MQRankSum=-0.426;QD=16.54;ReadPosRankSum=-0.802;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    0/1:34,40:74:99:1254,0,1118
7    107710123    rs11974886    C    T    1491.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1524,117,0
7    107720162    rs9690688    C    A    694.43    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.153;DB;DP=41;Dels=0.0;FS=1.333;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.313;QD=16.94;ReadPosRankSum=-2.964;SNPEFF_AMINO_ACID_CHANGE=V591F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107720046_107720231;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    0/1:15,26:41:99:724,0,452
7    107756639    rs75066987    G    A    436.21    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.19;DB;DP=39;Dels=0.0;FS=4.302;HRun=0;HaplotypeScore=0.6651;MQ=59.41;MQ0=0;MQRankSum=0.13;QD=11.18;ReadPosRankSum=-0.476;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205386    GT:AD:DP:GQ:PL    0/1:24,15:39:99:466,0,820
7    107791018    rs443552    G    C    195.51    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=15.04;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379022    GT:AD:DP:GQ:PL    0/1:6,7:13:99:226,0,200
7    107800093    rs190436754    C    A    212.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=1.936;QD=15.2;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:7,7:14:99:243,0,237
7    107800953    rs12670313    A    G    515.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.126;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5446;MQ=60.0;MQ0=0;MQRankSum=0.07;QD=12.88;ReadPosRankSum=0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:20,20:40:99:545,0,585
7    107808639    rs12537654    A    G    786.53    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.579;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.6;MQ0=0;MQRankSum=-0.983;QD=13.56;ReadPosRankSum=-0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:30,27:58:99:817,0,944
7    107808967    rs381828    A    C    277.41    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=13.87;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:9,11:20:99:307,0,281
7    107815858    rs11983886    T    A    572.15    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=3.386;DB;DP=51;Dels=0.0;FS=1.752;HRun=1;HaplotypeScore=1.7256;MQ=59.45;MQ0=0;MQRankSum=0.569;QD=11.22;ReadPosRankSum=-0.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445979    GT:AD:DP:GQ:PL    0/1:31,20:51:99:602,0,1025
7    107818851    rs428459    T    C    601.27    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9298;MQ=60.0;MQ0=0;MQRankSum=0.604;QD=13.98;ReadPosRankSum=-0.956;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000445979    GT:AD:DP:GQ:PL    0/1:22,21:43:99:631,0,700
7    107820911    rs414077    G    T    554.79    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.116;DB;DP=31;Dels=0.0;FS=3.452;HRun=0;HaplotypeScore=0.9979;MQ=59.28;MQ0=0;MQRankSum=-0.496;QD=17.34;ReadPosRankSum=-0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:14,17:31:99:585,0,457
7    107822198    rs2839850    A    G    348.04    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.628;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=59.38;MQ0=0;MQRankSum=0.167;QD=11.6;ReadPosRankSum=1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:17,13:30:99:378,0,504
7    107822396    rs2142325    G    A    1110.45    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=83;Dels=0.0;FS=5.569;HRun=1;HaplotypeScore=0.9789;MQ=59.78;MQ0=0;MQRankSum=0.664;QD=13.38;ReadPosRankSum=-0.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:42,40:83:99:1140,0,1432
7    107822636    rs4730294    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    107824678    rs6970656    A    G    499.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=44;Dels=0.0;FS=1.464;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.012;QD=11.36;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:22,22:44:99:530,0,677
7    107824889    rs401433    C    G    819.48    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=0.333;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=16.07;ReadPosRankSum=-0.333;SNPEFF_AMINO_ACID_CHANGE=A716;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107824861_107825058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379024    GT:AD:DP:GQ:PL    0/1:19,32:51:99:849,0,496
7    107825108    rs427909    T    C    178.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=22.3;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:2,6:8:57.16:208,0,57
7    107834613    rs6958498    G    C    1627.12    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=2.414;DB;DP=95;Dels=0.0;FS=0.785;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.54;QD=16.95;ReadPosRankSum=1.815;SNPEFF_AMINO_ACID_CHANGE=P526A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107834468_107834615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379024    GT:AD:DP:GQ:PL    0/1:41,54:95:99:1657,0,1173
7    107834624    rs6978315    T    C    1745.73    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=4.568;DB;DP=96;Dels=0.0;FS=0.806;HRun=0;HaplotypeScore=1.6647;MQ=59.52;MQ0=0;MQRankSum=-0.391;QD=18.18;ReadPosRankSum=1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417701    GT:AD:DP:GQ:PL    0/1:37,59:96:99:1776,0,940
7    107834734    rs404287    C    T    1673.26    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.948;DB;DP=95;Dels=0.0;FS=1.654;HRun=2;HaplotypeScore=0.9469;MQ=59.76;MQ0=0;MQRankSum=-0.326;QD=17.61;ReadPosRankSum=-1.915;SNPEFF_AMINO_ACID_CHANGE=A515;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107834706_107834872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379024    GT:AD:DP:GQ:PL    0/1:42,53:95:99:1703,0,1181
7    107838464    rs381318    G    T    433.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.17;QD=13.55;ReadPosRankSum=0.886;SNPEFF_AMINO_ACID_CHANGE=V410;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107838400_107838543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379024    GT:AD:DP:GQ:PL    0/1:16,16:32:99:464,0,519
7    107838637    rs388557    C    A    158.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=8.32;ReadPosRankSum=-0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:12,6:19:99:188,0,439
7    107849908    rs1269621    G    A    1153.40    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=78;Dels=0.0;FS=5.824;HRun=0;HaplotypeScore=1.7621;MQ=60.0;MQ0=0;MQRankSum=0.426;QD=14.79;ReadPosRankSum=-0.686;SNPEFF_AMINO_ACID_CHANGE=N325;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_107849865_107850049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379024    GT:AD:DP:GQ:PL    0/1:38,39:78:99:1183,0,1153
7    107872639    rs17389158    T    C    139.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=11.66;ReadPosRankSum=-0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418239    GT:AD:DP:GQ:PL    0/1:6,6:12:99:170,0,212
7    107875170    rs1269633    T    C    867.57    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DB;DP=76;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=2.7661;MQ=58.47;MQ0=0;MQRankSum=0.054;QD=11.42;ReadPosRankSum=-0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351718    GT:AD:DP:GQ:PL    0/1:41,34:76:99:898,0,1385
7    107880612    rs1269634    A    G    147.45    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.135;QD=11.34;ReadPosRankSum=-0.244;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_107880403_107880614;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRCAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417701    GT:AD:DP:GQ:PL    0/1:5,7:13:99:177,0,174
7    108524444    rs11404723    C    CA    102.16    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=22;FS=2.881;HRun=17;HaplotypeScore=151.4661;IndelType=I;MQ=44.47;MQ0=0;MQRankSum=-0.071;QD=4.64;ReadPosRankSum=-0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379007    GT:AD:DP:GQ:PL    0/1:13,7:22:8.62:141,0,9
7    110303527    rs1044729    T    C    167.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=11.94;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMMP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415362    GT:AD:DP:GQ:PL    0/1:7,7:14:99:197,0,235
7    111032822    rs78635244    G    C    680.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMMP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331762    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:713,51,0
7    111368454    rs34597439    G    A    603.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.65;MQ0=0;QD=27.44;SNPEFF_AMINO_ACID_CHANGE=S1885L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_111368330_111368776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    1/1:0,21:22:51.12:637,51,0
7    111372095    rs10953696    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    111376840    rs2301678    T    C    259.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544250    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:292,24,0
7    111382324    rs3757648    C    T    753.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:786,57,0
7    111399977    rs2074119    G    A    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428053    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
7    111423074    .    G    A    64.24    PASS    AB=0.233;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.688;DP=30;Dels=0.03;FS=6.69;HRun=15;HaplotypeScore=3.4991;MQ=43.69;MQ0=0;MQRankSum=-3.032;QD=2.07;ReadPosRankSum=2.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:7,23:30:94.23:94,0,101
7    111503187    rs6945534    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    111511980    rs77558853    C    T    487.18    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.596;DB;DP=46;Dels=0.0;FS=4.091;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.137;QD=10.59;ReadPosRankSum=0.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:29,17:46:99:517,0,1030
7    111512165    rs58173189    GC    G    784.02    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=4.018;DB;DP=42;FS=0.0;HRun=1;HaplotypeScore=113.0102;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=-1.087;QD=18.67;ReadPosRankSum=-0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:20,22:42:99:823,0,755
7    111535497    rs2074131    A    G    274.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.53;QD=15.25;ReadPosRankSum=0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:9,9:18:99:305,0,280
7    111535863    rs2074132    T    C    974.18    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.027;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5783;MQ=59.36;MQ0=0;MQRankSum=0.938;QD=14.99;ReadPosRankSum=2.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:33,32:65:99:1004,0,1091
7    111580132    rs73428869    T    C    1086.54    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.477;DB;DP=62;Dels=0.0;FS=3.011;HRun=2;HaplotypeScore=1.9203;MQ=58.88;MQ0=0;MQRankSum=-0.095;QD=17.52;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:25,36:62:99:1117,0,815
7    111580451    rs74866281    C    A    293.21    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=12.22;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:13,11:24:99:323,0,459
7    111585013    rs10627423    A    AAGAC    1114.57    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.014;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=116.7181;IndelType=I;MQ=55.89;MQ0=0;MQRankSum=-0.622;QD=34.83;ReadPosRankSum=1.828;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:18,14:32:99:1154,0,784
7    111585949    rs17159030    T    C    82.34    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=4.84;ReadPosRankSum=-0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:13,4:17:99:112,0,483
7    111624522    rs2074127    T    C    545.36    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=4.519;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6567;MQ=60.0;MQ0=0;MQRankSum=0.164;QD=11.6;ReadPosRankSum=1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:29,18:47:99:575,0,883
7    111629025    rs17401943    T    A    281.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.701;QD=14.08;ReadPosRankSum=-0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:10,10:20:99:312,0,354
7    111629366    rs2074129    G    A    250.63    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=19.28;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:5,8:13:99:281,0,128
7    111634067    rs566714    A    G    378.14    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.824;QD=17.19;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:10,12:22:99:408,0,301
7    111634368    rs847541    A    G    434.40    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.104;QD=14.01;ReadPosRankSum=-0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:14,16:31:99:464,0,492
7    111634389    rs847542    T    C    200.57    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=10.03;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:11,9:20:99:231,0,402
7    111640504    rs62474283    T    G    255.65    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=19.67;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:5,8:13:99:286,0,132
7    111640508    rs72138037    TAATA    T    428.42    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=102.8115;IndelType=D;MQ=60.72;MQ0=0;MQRankSum=-2.298;QD=28.56;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342288    GT:AD:DP:GQ:PL    0/1:6,9:15:99:467,0,442
7    112095782    rs6944364    T    G    1013.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417662    GT:AD:DP:GQ:PL    1/1:0,28:28:78.24:1046,78,0
7    112096792    rs6967593    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443101    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
7    112097296    rs60461435    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443101    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
7    112099136    rs34627083    TATA    T    499.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=42.6487;IndelType=D;MQ=52.5;MQ0=0;QD=49.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429071    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:541,30,0
7    112101909    rs2708609    T    A    627.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429071    GT:AD:DP:GQ:PL    1/1:0,27:27:54.16:660,54,0
7    112107999    rs1024569    T    C    950.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005558    GT:AD:DP:GQ:PL    1/1:0,27:27:72.22:984,72,0
7    112108291    rs1024570    C    T    372.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466459    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:405,33,0
7    112115658    rs7817    C    T    187.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=26.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005558    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:220,18,0
7    112125089    rs3095027    A    C    776.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462155    GT:AD:DP:GQ:PL    1/1:0,26:26:72.15:810,72,0
7    112125099    rs3095028    G    A    807.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462155    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:841,66,0
7    112129717    rs3095033    A    C    174.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429049    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
7    112130009    rs11767398    A    C    2316.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429049    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2350,172,0
7    112575149    rs10231221    A    C    486.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297145    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:519,39,0
7    112579863    rs34728190    G    A    189.98    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=21.11;ReadPosRankSum=0.067;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358032    GT:AD:DP:GQ:PL    0/1:2,7:9:61.57:220,0,62
7    112724417    rs2256044    A    G    1552.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=Y120;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_112722336_112724946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR85;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297146    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1586,117,0
7    112724525    rs1608890    A    G    2732.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=G84;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_112722336_112724946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR85;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297146    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2765,202,0
7    112757862    rs2272260    G    A    97.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.03;MQ0=0;QD=19.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073346.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397764    GT:AD:DP:GQ:PL    1/1:0,5:5:12:130,12,0
7    113518502    rs2974938    A    T    2188.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9664;MQ=59.46;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=L882H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_113516832_113520180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284601    GT:AD:DP:GQ:PL    1/1:0,68:69:99:2221,163,0
7    113519719    rs2974944    A    T    2511.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=30.62;SNPEFF_AMINO_ACID_CHANGE=N155K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_113519611_113520180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449795    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2544,202,0
7    113519796    rs2974942    C    T    2895.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=59.72;MQ0=0;QD=35.31;SNPEFF_AMINO_ACID_CHANGE=V130M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_113519611_113520180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449795    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2929,217,0
7    113520262    rs11973095    C    T    181.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=18.12;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284601    GT:AD:DP:GQ:PL    0/1:4,6:10:81.12:211,0,81
7    114210814    rs17137124    T    C    325.64    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.081;DB;DP=36;Dels=0.0;FS=2.62;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.503;QD=9.05;ReadPosRankSum=-0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FOXP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324462    GT:AD:DP:GQ:PL    0/1:22,14:36:99:356,0,811
7    114296545    rs881732    A    C    740.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=62;Dels=0.0;FS=3.505;HRun=1;HaplotypeScore=0.9332;MQ=59.25;MQ0=0;MQRankSum=0.099;QD=11.94;ReadPosRankSum=-0.788;SNPEFF_AMINO_ACID_CHANGE=S364;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_114296495_114296649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FOXP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393500    GT:AD:DP:GQ:PL    0/1:31,31:62:99:770,0,989
7    114303491    rs34735973    A    AT    365.82    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.664;DB;DP=56;FS=1.412;HRun=10;HaplotypeScore=160.8844;IndelType=I;MQ=56.31;MQ0=0;MQRankSum=-0.49;QD=6.42;ReadPosRankSum=0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FOXP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350908    GT:AD:DP:GQ:PL    0/1:39,17:56:99:405,0,680
7    114303617    rs35518337    CT    C    175.12    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DB;DP=39;FS=0.0;HRun=15;HaplotypeScore=203.8128;IndelType=D;MQ=55.08;MQ0=0;MQRankSum=-2.418;QD=4.49;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FOXP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350908    GT:AD:DP:GQ:PL    0/1:27,10:39:99:214,0,139
7    114304563    rs1378771    C    T    289.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.364;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.491;QD=14.5;ReadPosRankSum=-0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FOXP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350908    GT:AD:DP:GQ:PL    0/1:10,10:20:99:320,0,288
7    114619598    rs2594449    C    A    3335.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=A194;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_114619561_114619836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDFIC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257724    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3336,247,0
7    115596528    rs17301046    A    C    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497829    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
7    115624288    rs4730703    T    C    2465.80    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.449;DB;DP=172;Dels=0.0;FS=3.906;HRun=0;HaplotypeScore=1.9889;MQ=59.76;MQ0=0;MQRankSum=0.453;QD=14.25;ReadPosRankSum=0.882;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265440    GT:AD:DP:GQ:PL    0/1:89,83:172:99:2496,0,2592
7    115624307    rs188929058    T    C    2844.51    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=5.948;DB;DP=191;Dels=0.0;FS=7.75;HRun=0;HaplotypeScore=2.1483;MQ=59.78;MQ0=0;MQRankSum=-0.286;QD=14.89;ReadPosRankSum=0.855;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265440    GT:AD:DP:GQ:PL    0/1:97,94:191:99:2875,0,2819
7    115874466    rs12670683    T    C    179.75    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=11.98;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257721    GT:AD:DP:GQ:PL    0/1:8,7:15:99:210,0,287
7    115874560    rs2030978    C    T    783.89    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=73;Dels=0.0;FS=3.445;HRun=0;HaplotypeScore=4.5245;MQ=59.05;MQ0=0;MQRankSum=0.853;QD=10.74;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257721    GT:AD:DP:GQ:PL    0/1:42,31:73:99:814,0,1301
7    115874817    rs35627858    TAA    T    125.86    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=16;FS=0.0;HRun=5;HaplotypeScore=55.0836;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=1.776;QD=7.87;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257721    GT:AD:DP:GQ:PL    0/1:11,5:16:99:165,0,505
7    115891641    rs58266146    G    A    139.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=56.96;MQ0=0;MQRankSum=1.307;QD=13.96;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455989    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,133
7    115891686    rs11761901    G    A    279.44    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.7946;MQ=55.8;MQ0=0;MQRankSum=0.648;QD=16.44;ReadPosRankSum=0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455989    GT:AD:DP:GQ:PL    0/1:7,9:17:99:309,0,162
7    115891746    .    AAAAG    A    830.55    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=4.396;DP=55;FS=0.0;HRun=0;HaplotypeScore=392.5522;IndelType=D;MQ=56.21;MQ0=0;MQRankSum=-0.817;QD=15.1;ReadPosRankSum=0.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455989    GT:AD:DP:GQ:PL    0/1:32,23:55:99:870,0,1086
7    115892295    rs17138466    C    A    171.58    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.056;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.225;QD=9.03;ReadPosRankSum=0.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455989    GT:AD:DP:GQ:PL    0/1:12,7:19:99:202,0,445
7    115892650    rs1048508    T    G    706.24    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DB;DP=60;Dels=0.0;FS=2.362;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.3;QD=11.77;ReadPosRankSum=-0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455989    GT:AD:DP:GQ:PL    0/1:35,25:60:99:736,0,1056
7    115892738    rs17138472    A    G    321.49    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=57.53;MQ0=0;MQRankSum=0.95;QD=16.92;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455989    GT:AD:DP:GQ:PL    0/1:8,11:19:99:351,0,269
7    115892757    rs1048509    G    A    238.44    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=14.9;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455989    GT:AD:DP:GQ:PL    0/1:6,10:16:99:268,0,201
7    115897222    rs2402058    A    G    113.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.186;QD=10.35;ReadPosRankSum=-1.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463746    GT:AD:DP:GQ:PL    0/1:6,5:11:99:144,0,212
7    115897242    rs2402059    T    G    118.56    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.267;QD=8.47;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463746    GT:AD:DP:GQ:PL    0/1:9,5:14:99:149,0,318
7    115897392    rs4710    G    C    585.98    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.934;DB;DP=52;Dels=0.0;FS=4.001;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.27;ReadPosRankSum=-0.179;SNPEFF_AMINO_ACID_CHANGE=R132;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_115897348_115897722;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537767    GT:AD:DP:GQ:PL    0/1:27,25:52:99:616,0,901
7    116140076    rs2535220    T    C    117.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222693    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
7    116140275    rs11767363    T    C    470.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222693    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:504,39,0
7    116140524    rs2270188    G    T    840.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222693    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:874,69,0
7    116140616    rs2270189    A    G    458.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.2;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222693    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:492,36,0
7    116145957    rs4730743    A    T    576.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=38.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393480    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:609,45,0
7    116165360    rs1997623    A    C    68.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341049    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:101,9,0
7    116340531    rs35212357    A    AT    186.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=18.0468;IndelType=I;MQ=62.13;MQ0=0;QD=37.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437703    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:228,15,0
7    116395257    rs38860    C    T    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318493    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
7    116397572    rs13223756    A    G    1062.60    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.103;DB;DP=74;Dels=0.0;FS=3.148;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.141;QD=14.36;ReadPosRankSum=0.178;SNPEFF_AMINO_ACID_CHANGE=Q648;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_116397491_116397593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MET;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318493    GT:AD:DP:GQ:PL    0/1:38,36:74:99:1093,0,1128
7    116421967    rs6947629    T    C    347.43    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.192;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=24.82;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318493    GT:AD:DP:GQ:PL    0/1:4,10:14:99:377,0,111
7    116435416    rs41735    G    A    128.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318493    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
7    116435768    rs41736    C    T    2634.90    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=8.72;DB;DP=184;DS;Dels=0.0;FS=3.463;HRun=0;HaplotypeScore=2.4637;MQ=59.87;MQ0=0;MQRankSum=1.405;QD=14.32;ReadPosRankSum=1.29;SNPEFF_AMINO_ACID_CHANGE=D1286;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_116435709_116435845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MET;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397752    GT:AD:DP:GQ:PL    0/1:97,87:184:99:2665,0,2929
7    116436022    rs2023748    G    A    1493.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.554;DB;DP=96;Dels=0.0;FS=1.766;HRun=1;HaplotypeScore=2.9465;MQ=60.0;MQ0=0;MQRankSum=0.688;QD=15.55;ReadPosRankSum=0.439;SNPEFF_AMINO_ACID_CHANGE=A1339;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_116435941_116438440;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MET;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397752    GT:AD:DP:GQ:PL    0/1:48,48:96:99:1523,0,1350
7    116436097    rs41737    G    A    1940.45    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=5.191;DB;DP=140;Dels=0.0;FS=7.865;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.703;QD=13.86;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=P1364;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_116435941_116438440;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MET;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397752    GT:AD:DP:GQ:PL    0/1:74,66:140:99:1970,0,1992
7    116528240    rs4808    C    T    647.98    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.514;DB;DP=48;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=13.5;ReadPosRankSum=-0.225;SNPEFF_AMINO_ACID_CHANGE=S11L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_116528181_116528244;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPZA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000464223    GT:AD:DP:GQ:PL    0/1:26,22:48:99:678,0,732
7    116555991    rs1858968    A    G    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPZA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
7    116557939    rs3173936    C    T    474.02    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.953;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.5;QD=18.23;ReadPosRankSum=0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPZA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449080    GT:AD:DP:GQ:PL    0/1:10,16:26:99:504,0,250
7    116596697    rs6960131    A    G    1494.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=H97R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_116596477_116596777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST7OT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397750    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1527,126,0
7    116598735    rs6466595    A    G    1037.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_AMINO_ACID_CHANGE=I155V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_116598643_116598739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST7OT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397751    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1071,78,0
7    116598784    rs12706127    A    G    330.13    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.903;QD=19.42;ReadPosRankSum=-1.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST7OT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397750    GT:AD:DP:GQ:PL    0/1:7,10:17:99:360,0,237
7    116607501    rs10259502    T    C    842.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST7OT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397751    GT:AD:DP:GQ:PL    1/1:0,24:24:69.20:876,69,0
7    116660614    rs12706136    T    C    238.34    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.404;DB;DP=38;Dels=0.0;FS=1.994;HRun=3;HaplotypeScore=0.9947;MQ=59.39;MQ0=0;MQRankSum=-0.488;QD=6.27;ReadPosRankSum=-2.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265437    GT:AD:DP:GQ:PL    0/1:22,16:38:99:268,0,746
7    116660803    rs7788320    A    G    650.94    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.56;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.275;QD=18.6;ReadPosRankSum=-2.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265437    GT:AD:DP:GQ:PL    0/1:16,19:35:99:681,0,545
7    116769814    rs116961120    C    T    468.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.207;DB;DP=36;Dels=0.0;FS=4.377;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=2.213;QD=13.01;ReadPosRankSum=0.875;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265437    GT:AD:DP:GQ:PL    0/1:20,16:36:99:498,0,634
7    116862260    rs193594    G    A    156.69    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=19.59;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443979    GT:AD:DP:GQ:PL    0/1:3,5:8:99:187,0,100
7    116918060    rs6972479    G    A    125.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.03;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265441    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
7    116918085    rs2228946    C    T    150.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265441    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:183,15,0
7    116962933    rs34431449    T    TC    304.55    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=17;FS=4.56;HRun=5;HaplotypeScore=34.8527;IndelType=I;MQ=58.63;MQ0=0;MQRankSum=0.439;QD=17.91;ReadPosRankSum=-0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265441    GT:AD:DP:GQ:PL    0/1:7,10:17:99:344,0,175
7    117023237    rs10278953    A    G    524.24    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0463;MQ=60.0;MQ0=0;MQRankSum=-1.548;QD=15.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284629    GT:AD:DP:GQ:PL    0/1:16,17:33:99:554,0,520
7    117066718    rs7784156    C    G    396.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=24.78;ReadPosRankSum=-0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284629    GT:AD:DP:GQ:PL    0/1:4,12:16:99:427,0,112
7    117067040    rs10242827    C    T    660.32    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.052;QD=13.48;ReadPosRankSum=-0.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284629    GT:AD:DP:GQ:PL    0/1:23,26:49:99:690,0,735
7    117175505    rs1800502    A    G    368.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.795;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.769;QD=12.7;ReadPosRankSum=-0.923;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446805    GT:AD:DP:GQ:PL    0/1:14,14:29:99:398,0,465
7    117188660    rs3832534    ATG    A    97.07    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=56.6813;IndelType=D;MQ=53.3;MQ0=0;MQRankSum=1.932;QD=6.93;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003084    GT:AD:DP:GQ:PL    0/1:9,5:13:99:136,0,236
7    117199533    rs213950    G    A    1156.91    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.7;MQ0=0;MQRankSum=-0.016;QD=15.02;ReadPosRankSum=-1.605;SNPEFF_AMINO_ACID_CHANGE=V409M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_117199518_117199709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454343    GT:AD:DP:GQ:PL    0/1:31,46:77:99:1187,0,1039
7    117230645    rs4148711    T    A    39.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472848    GT:AD:DP:GQ:PL    0/1:2,2:4:59.35:70,0,59
7    117231852    rs11978434    T    C    216.39    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=14.43;ReadPosRankSum=0.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472848    GT:AD:DP:GQ:PL    0/1:8,7:15:99:246,0,271
7    117235055    rs1042077    T    G    465.35    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.64;DB;DP=35;Dels=0.0;FS=3.073;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.363;QD=13.3;ReadPosRankSum=0.052;SNPEFF_AMINO_ACID_CHANGE=T793;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_117234984_117235112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454343    GT:AD:DP:GQ:PL    0/1:18,17:35:99:495,0,513
7    117235196    rs140266920    CAT    C    209.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=31.415;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=23.3;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003084    GT:AD:DP:GQ:PL    0/1:3,6:9:99:249,0,147
7    117246636    rs35050470    G    A    488.44    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=4.561;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=16.84;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003084    GT:AD:DP:GQ:PL    0/1:14,15:29:99:518,0,356
7    117254527    rs213981    A    C    121.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=20.33;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003084    GT:AD:DP:GQ:PL    0/1:2,4:6:62.49:152,0,62
7    117267511    rs213989    C    A    133.06    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=16;Dels=0.0;FS=7.83;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.062;QD=8.32;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003084    GT:AD:DP:GQ:PL    0/1:10,6:16:99:163,0,290
7    117292696    rs214164    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    117292919    rs1800131    A    G    694.96    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.06;DB;DP=53;Dels=0.0;FS=1.084;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=13.11;ReadPosRankSum=1.068;SNPEFF_AMINO_ACID_CHANGE=T1238;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_117292896_117292985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454343    GT:AD:DP:GQ:PL    0/1:23,30:53:99:725,0,647
7    117307108    rs1800136    G    A    521.54    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=46;Dels=0.0;FS=4.291;HRun=1;HaplotypeScore=0.8667;MQ=59.19;MQ0=0;MQRankSum=-0.62;QD=11.34;ReadPosRankSum=-0.41;SNPEFF_AMINO_ACID_CHANGE=Q1402;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_117306962_117308719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454343    GT:AD:DP:GQ:PL    0/1:28,18:46:99:552,0,938
7    117361034    rs112341621    A    ATAAT    653.95    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.873;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=73.0022;IndelType=I;MQ=55.74;MQ0=0;MQRankSum=-2.168;QD=31.14;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTNBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160373    GT:AD:DP:GQ:PL    0/1:12,8:21:99:693,0,656
7    117364998    rs6973257    G    A    409.64    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.398;QD=19.51;ReadPosRankSum=-1.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTNBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160373    GT:AD:DP:GQ:PL    0/1:8,13:21:99:440,0,267
7    117395664    rs34491454    T    G    1444.58    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.093;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.55;MQ0=0;MQRankSum=-1.406;QD=15.7;ReadPosRankSum=1.507;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTNBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467088    GT:AD:DP:GQ:PL    0/1:45,47:92:99:1475,0,1570
7    117431113    rs35894760    A    G    349.89    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.299;QD=14.0;ReadPosRankSum=1.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTNBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434890    GT:AD:DP:GQ:PL    0/1:12,13:25:99:380,0,425
7    117450792    rs2111204    A    C    1825.13    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=137;Dels=0.0;FS=1.444;HRun=0;HaplotypeScore=3.6158;MQ=59.83;MQ0=0;MQRankSum=0.795;QD=13.32;ReadPosRankSum=1.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTNBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412853    GT:AD:DP:GQ:PL    0/1:72,65:137:99:1855,0,2165
7    117513664    rs7809993    C    G    41.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.96;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTNBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412853    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:73,6,0
7    117824239    rs2896242    G    C    122.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.48;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_117824086_117824308;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249299    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
7    117825549    rs9655829    T    G    210.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249299    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:243,21,0
7    117825681    rs45604739    A    G    1651.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249299    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1684,132,0
7    117825834    rs2041527    A    G    581.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249299    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:615,45,0
7    117832138    rs1061731    G    A    173.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411938    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
7    117864641    rs2286865    C    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477532    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    117867960    rs72052846    C    CT    459.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.273;DB;DP=34;FS=10.809;HRun=14;HaplotypeScore=132.382;IndelType=I;MQ=58.57;MQ0=0;MQRankSum=-0.273;QD=13.51;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265224    GT:AD:DP:GQ:PL    1/1:13,20:34:30.99:501,31,0
7    120380961    rs3834346    ATTTG    A    185.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=49.2286;IndelType=D;MQ=61.07;MQ0=0;MQRankSum=1.495;QD=18.57;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331113    GT:AD:DP:GQ:PL    0/1:5,5:10:99:225,0,125
7    120428607    rs41622    G    A    2804.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=37.39;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222747    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2838,211,0
7    120428799    rs41623    C    A    1735.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=P255;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_120427376_120428951;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222747    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1768,141,0
7    120450658    rs7805733    G    A    368.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222747    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:402,33,0
7    120450678    rs112555207    TCA    T    122.07    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=73.8068;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=11.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222747    GT:AD:DP:GQ:PL    0/1:4,5:11:48.64:161,0,49
7    120450736    rs3735467    C    A    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.82;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222747    GT:AD:DP:GQ:PL    0/1:4,2:6:64.93:65,0,147
7    120590786    rs11408222    C    CG    485.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=75.9745;IndelType=I;MQ=39.92;MQ0=0;QD=44.13;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315870    GT:AD:DP:GQ:PL    1/1:1,10:11:33.11:528,33,0
7    120590816    rs77359106    C    T    32.76    MQFilter40;QDFilter2    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=32;Dels=0.03;FS=0.0;HRun=13;HaplotypeScore=3.8784;MQ=32.79;MQ0=0;MQRankSum=-0.916;QD=0.99;ReadPosRankSum=0.647;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339121    GT:AD:DP:GQ:PL    0/1:17,15:32:62.75:63,0,176
7    120608216    rs79589210    C    T    155.16    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.05;MQ0=0;MQRankSum=-0.198;QD=19.4;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315870    GT:AD:DP:GQ:PL    0/1:3,5:8:43.92:185,0,44
7    120613419    rs2721369    A    G    406.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497502    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:440,36,0
7    120655676    rs4730984    G    T    220.37    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=18;Dels=0.0;FS=2.527;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.844;QD=12.24;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    0/1:10,8:18:99:250,0,346
7    120686759    rs2721326    A    C    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
7    120704289    rs2721375    C    T    1976.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    1/1:0,60:61:99:2010,156,0
7    120739962    rs33990520    GTT    G    449.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.042;DB;DP=35;FS=4.809;HRun=15;HaplotypeScore=181.5647;IndelType=D;MQ=58.47;MQ0=1;MQRankSum=-1.631;QD=12.48;ReadPosRankSum=0.794;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520801    GT:AD:DP:GQ:PL    1/1:10,21:35:28.26:491,28,0
7    120740103    rs798937    G    T    465.23    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=52;Dels=0.0;FS=1.152;HRun=0;HaplotypeScore=1.9523;MQ=58.29;MQ0=0;MQRankSum=1.439;QD=8.95;ReadPosRankSum=-1.879;SNPEFF_AMINO_ACID_CHANGE=T291;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_120739980_120740148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    0/1:33,19:52:99:495,0,900
7    120764241    rs3779384    C    G    205.07    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=15.77;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    0/1:6,7:13:99:235,0,210
7    120764477    rs1524498    G    C    457.95    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.006;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=1.262;QD=9.35;ReadPosRankSum=0.811;SNPEFF_AMINO_ACID_CHANGE=A117;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_120764385_120764527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423795    GT:AD:DP:GQ:PL    0/1:30,19:49:99:488,0,919
7    120764573    rs798948    C    A    487.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:521,39,0
7    120765954    rs798949    T    C    193.68    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.038;DB;DP=28;Dels=0.0;FS=1.757;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.632;QD=6.92;ReadPosRankSum=-0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    0/1:18,10:28:99:224,0,552
7    120770437    rs34320754    G    A    133.31    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.355;QD=8.89;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    0/1:9,6:15:99:163,0,290
7    120773954    rs61128227    A    G    697.45    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=68;Dels=0.0;FS=1.118;HRun=0;HaplotypeScore=0.9665;MQ=59.66;MQ0=0;MQRankSum=-0.478;QD=10.26;ReadPosRankSum=0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428526    GT:AD:DP:GQ:PL    0/1:39,29:68:99:727,0,1191
7    120776097    rs41281692    C    G    333.99    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=26;Dels=0.0;FS=5.076;HRun=1;HaplotypeScore=0.9665;MQ=58.2;MQ0=0;MQRankSum=-0.753;QD=12.85;ReadPosRankSum=0.753;SNPEFF_AMINO_ACID_CHANGE=A331G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_120776094_120776144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423795    GT:AD:DP:GQ:PL    0/1:12,14:26:99:364,0,314
7    120776281    rs13232048    G    T    50.22    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.382;QD=4.57;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428526    GT:AD:DP:GQ:PL    0/1:8,3:11:80.21:80,0,292
7    120781884    rs11979314    G    T    208.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
7    120884453    rs2272196    G    A    209.03    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.847;DB;DP=16;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.423;QD=13.06;ReadPosRankSum=-1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310396    GT:AD:DP:GQ:PL    0/1:9,7:16:99:239,0,324
7    120901695    rs10953934    G    A    1523.78    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=7.087;DB;DP=132;Dels=0.0;FS=14.725;HRun=1;HaplotypeScore=3.3496;MQ=58.98;MQ0=0;MQRankSum=-0.776;QD=11.54;ReadPosRankSum=-0.528;SNPEFF_AMINO_ACID_CHANGE=D554N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_120901686_120901972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423795    GT:AD:DP:GQ:PL    0/1:74,58:132:99:1554,0,2005
7    120965464    rs10668066    G    GCACC    5473.31    PASS    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.822;DB;DP=135;FS=4.366;HRun=0;HaplotypeScore=487.6811;IndelType=I;MQ=58.76;MQ0=0;MQRankSum=-1.872;QD=40.54;ReadPosRankSum=3.103;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222462    GT:AD:DP:GQ:PL    0/1:58,75:135:99:5473,0,2245
7    120969769    rs2908004    G    A    370.55    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.385;DB;DP=28;Dels=0.0;FS=1.446;HRun=0;HaplotypeScore=0.0;MQ=55.74;MQ0=0;MQRankSum=-0.256;QD=13.23;ReadPosRankSum=0.205;SNPEFF_AMINO_ACID_CHANGE=G23R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_120969621_120969871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414945    GT:AD:DP:GQ:PL    0/1:15,13:28:99:401,0,400
7    120969917    .    ACTC    A    215.98    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DP=14;FS=0.0;HRun=0;HaplotypeScore=53.4761;IndelType=D;MQ=51.13;MQ0=0;MQRankSum=-2.777;QD=15.43;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222462    GT:AD:DP:GQ:PL    0/1:8,6:14:99:255,0,430
7    120979089    rs2707466    C    T    819.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.193;DB;DP=45;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=18.21;ReadPosRankSum=-1.402;SNPEFF_AMINO_ACID_CHANGE=T253I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_120978935_120979512;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361301    GT:AD:DP:GQ:PL    0/1:18,27:45:99:849,0,526
7    121000021    rs3837124    A    AT    373.41    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.681;DB;DP=31;FS=0.0;HRun=9;HaplotypeScore=72.321;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=-0.187;QD=12.05;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412653    GT:AD:DP:GQ:PL    0/1:15,15:31:99:412,0,275
7    121018857    rs917726    A    T    72.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.37;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359943    GT:AD:DP:GQ:PL    0/1:3,4:7:99:103,0,110
7    121080957    rs7795121    G    A    1293.64    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=101;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.5784;MQ=59.14;MQ0=0;MQRankSum=1.237;QD=12.81;ReadPosRankSum=-0.386;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-3L10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416734    GT:AD:DP:GQ:PL    0/1:51,49:101:99:1324,0,1357
7    121081115    rs6466786    A    C    1940.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-3L10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416734    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1974,156,0
7    121081222    rs76006173    T    C    511.14    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=54;Dels=0.0;FS=2.337;HRun=0;HaplotypeScore=0.9992;MQ=59.57;MQ0=0;MQRankSum=0.318;QD=9.47;ReadPosRankSum=-0.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-3L10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416734    GT:AD:DP:GQ:PL    0/1:33,21:54:99:541,0,1043
7    121164363    rs2896305    C    G    975.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:1009,75,0
7    121214513    rs17132746    A    C    799.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC004875.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408763    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:833,66,0
7    121214581    rs17132749    T    C    1562.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC004875.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408763    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1596,114,0
7    121214757    rs62472545    C    T    1534.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC004875.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408763    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1568,114,0
7    121513561    rs740965    T    G    430.74    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.708;QD=17.23;ReadPosRankSum=-0.481;SNPEFF_AMINO_ACID_CHANGE=I3S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_121513143_121513611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:9,16:25:99:461,0,291
7    121548780    rs10236018    A    C    1091.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.063;DB;DP=72;Dels=0.0;FS=10.29;HRun=1;HaplotypeScore=0.9332;MQ=59.68;MQ0=0;MQRankSum=-0.144;QD=15.16;ReadPosRankSum=-0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1122,0,1006
7    121608449    rs1196510    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471837    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
7    121617017    rs3817483    A    G    211.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.239;QD=17.64;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:4,8:12:99:242,0,131
7    121636647    rs7795588    T    C    636.55    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=0.284;DB;DP=53;Dels=0.0;FS=6.32;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=12.01;ReadPosRankSum=-0.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:33,20:53:99:667,0,1111
7    121653177    rs61732006    A    G    1641.87    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.211;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4918;MQ=59.6;MQ0=0;MQRankSum=0.929;QD=14.15;ReadPosRankSum=0.418;SNPEFF_AMINO_ACID_CHANGE=T1359;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_121650388_121653943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:54,62:116:99:1672,0,1511
7    121653250    rs61732005    G    A    1548.87    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.261;DB;DP=97;Dels=0.0;FS=1.922;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.007;QD=15.97;ReadPosRankSum=-1.564;SNPEFF_AMINO_ACID_CHANGE=D1384N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_121650388_121653943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:46,51:97:99:1579,0,1530
7    121653374    rs35947407    GTGA    G    400.93    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=4.007;DB;DP=33;FS=1.585;HRun=0;HaplotypeScore=222.5428;IndelType=D;MQ=59.63;MQ0=0;MQRankSum=0.554;QD=12.15;ReadPosRankSum=1.572;SNPEFF_AMINO_ACID_CHANGE=GD1425G;SNPEFF_CODON_CHANGE=ggtgat/ggt;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_7_121650388_121653943;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:21,12:33:99:440,0,939
7    121653398    rs1147504    G    A    1284.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=38.93;SNPEFF_AMINO_ACID_CHANGE=G1433D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_121650388_121653943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1318,99,0
7    121671425    rs1147496    T    G    163.83    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=14.89;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:5,6:11:99:194,0,171
7    121684718    rs1147487    A    G    74.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.67;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,132
7    121691293    rs1206360    C    T    119.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    1/1:0,5:5:15:152,15,0
7    121698827    rs1206381    A    C    138.62    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=6.93;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    0/1:13,7:20:99:169,0,445
7    121699151    rs111951214    AT    A    80.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=14;HaplotypeScore=58.5702;IndelType=D;MQ=57.05;MQ0=0;QD=10.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393386    GT:AD:DP:GQ:PL    1/1:2,6:8:17.33:122,17,0
7    121716610    rs145309509    C    T    858.10    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.141;DB;DP=69;Dels=0.0;FS=8.647;HRun=1;HaplotypeScore=2.7197;MQ=60.0;MQ0=0;MQRankSum=1.872;QD=12.44;ReadPosRankSum=-0.012;SNPEFF_AMINO_ACID_CHANGE=G905E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_121716187_121716661;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AASS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393376    GT:AD:DP:GQ:PL    0/1:39,29:69:99:888,0,1171
7    121719586    rs1206368    C    T    1107.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AASS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393376    GT:AD:DP:GQ:PL    1/1:0,38:38:90.29:1141,90,0
7    121719823    rs1206369    G    A    1415.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AASS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393376    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1449,108,0
7    121725961    rs3213699    A    G    222.21    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=20.2;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AASS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393376    GT:AD:DP:GQ:PL    0/1:4,7:11:99:252,0,121
7    121753516    rs279675    C    A    322.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AASS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393376    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
7    121758290    rs279677    G    C    656.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AASS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393376    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:689,54,0
7    121766638    rs2302338    A    T    261.63    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=11.89;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AASS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393376    GT:AD:DP:GQ:PL    0/1:12,10:22:99:292,0,423
7    121773991    rs10242443    G    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AASS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417368    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
7    121942832    rs34921295    G    GACA    3470.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=222.393;IndelType=I;MQ=55.49;MQ0=0;QD=65.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FEZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418046    GT:AD:DP:GQ:PL    1/1:3,50:53:99:3471,154,0
7    121942847    rs6968786    G    C    656.87    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.337;DB;DP=60;Dels=0.0;FS=3.451;HRun=1;HaplotypeScore=0.0;MQ=55.7;MQ0=0;MQRankSum=2.452;QD=10.95;ReadPosRankSum=1.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FEZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418046    GT:AD:DP:GQ:PL    0/1:33,27:60:99:687,0,998
7    121944527    rs11761299    T    C    223.48    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.182;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.897;QD=8.28;ReadPosRankSum=-1.387;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FEZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331178    GT:AD:DP:GQ:PL    0/1:14,13:27:99:253,0,466
7    121960407    rs1348442    T    G    2318.32    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=4.212;DB;DP=136;Dels=0.0;FS=6.462;HRun=0;HaplotypeScore=3.4776;MQ=60.0;MQ0=0;MQRankSum=0.889;QD=17.05;ReadPosRankSum=0.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313070    GT:AD:DP:GQ:PL    0/1:59,77:136:99:2348,0,1839
7    121960438    rs1443749    C    T    1612.38    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=5.511;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=18.32;ReadPosRankSum=0.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313070    GT:AD:DP:GQ:PL    0/1:34,54:88:99:1642,0,925
7    121965345    rs11760856    A    G    107.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.74;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313070    GT:AD:DP:GQ:PL    0/1:6,4:10:99:137,0,211
7    121985541    rs798685    T    C    1805.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313070    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1838,138,0
7    121985556    rs798684    C    G    2119.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313070    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2152,162,0
7    122114291    rs7785075    T    C    857.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313070    GT:AD:DP:GQ:PL    1/1:0,23:23:69.19:890,69,0
7    122303321    rs2251761    C    T    3070.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8266;MQ=58.98;MQ0=0;MQRankSum=-0.895;QD=33.74;ReadPosRankSum=1.009;SNPEFF_AMINO_ACID_CHANGE=L219;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_122303291_122303623;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADPS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545465    GT:AD:DP:GQ:PL    1/1:1,90:91:99:3103,191,0
7    122337678    rs6466831    G    A    190.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340112    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:223,18,0
7    122634946    .    A    G    1173.72    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DP=104;Dels=0.0;FS=3.846;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=-2.631;QD=11.29;ReadPosRankSum=-1.027;SNPEFF_AMINO_ACID_CHANGE=I248T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_122634759_122635754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249284    GT:AD:DP:GQ:PL    0/1:63,41:104:99:1204,0,2074
7    122635024    rs860170    C    T    738.12    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=2.253;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.94;QD=10.7;ReadPosRankSum=0.385;SNPEFF_AMINO_ACID_CHANGE=R222H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_122634759_122635754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249284    GT:AD:DP:GQ:PL    0/1:43,26:69:99:768,0,1214
7    122755445    rs6466854    A    G    483.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194130    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:516,45,0
7    122757505    rs28364221    A    AT    433.51    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.993;DB;DP=52;FS=2.767;HRun=7;HaplotypeScore=113.2255;IndelType=I;MQ=60.21;MQ0=0;MQRankSum=0.011;QD=8.34;ReadPosRankSum=-0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194130    GT:AD:DP:GQ:PL    0/1:35,17:52:99:473,0,727
7    122769308    rs3735438    C    T    57.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.19;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194130    GT:AD:DP:GQ:PL    0/1:5,3:8:87.55:88,0,184
7    122809111    rs1880178    T    C    452.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194130    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:486,36,0
7    123097380    rs12673749    C    T    558.12    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.175;QD=16.91;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    0/1:15,18:33:99:588,0,536
7    123097468    rs10234745    T    C    1961.47    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.979;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=18.16;ReadPosRankSum=0.658;SNPEFF_AMINO_ACID_CHANGE=A720;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123097435_123097620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    0/1:44,64:108:99:1991,0,1306
7    123119990    rs10500091    T    C    382.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.487;QD=13.65;ReadPosRankSum=2.344;SNPEFF_AMINO_ACID_CHANGE=Q423;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123119849_123120024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    0/1:16,12:28:99:412,0,544
7    123120070    rs12155170    C    T    62.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=8.99;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    0/1:4,3:7:92.95:93,0,148
7    123142588    rs11770523    A    T    464.93    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=22;Dels=0.0;FS=3.183;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=21.13;ReadPosRankSum=0.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488987    GT:AD:DP:GQ:PL    0/1:6,16:22:99:495,0,176
7    123143527    rs2402660    G    A    336.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:369,30,0
7    123150194    rs1917708    T    C    745.96    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.834;QD=17.76;ReadPosRankSum=0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    0/1:19,23:42:99:776,0,649
7    123150236    rs4276609    C    T    334.21    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.834;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.63;QD=13.37;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    0/1:14,11:25:99:364,0,507
7    123152019    rs10255061    C    T    863.82    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.39;DB;DP=42;Dels=0.0;FS=1.452;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=20.57;ReadPosRankSum=0.158;SNPEFF_AMINO_ACID_CHANGE=V126M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123151998_123152398;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    0/1:12,30:42:99:894,0,386
7    123152035    rs10270705    T    C    831.81    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=1.323;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8932;MQ=60.0;MQ0=0;MQRankSum=1.346;QD=18.48;ReadPosRankSum=0.972;SNPEFF_AMINO_ACID_CHANGE=E120;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123151998_123152398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQUB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324698    GT:AD:DP:GQ:PL    0/1:17,28:45:99:862,0,577
7    123185789    rs3837115    CTA    C    399.90    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.421;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=104.3998;IndelType=D;MQ=60.33;MQ0=0;MQRankSum=-0.17;QD=13.79;ReadPosRankSum=-0.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491033    GT:AD:DP:GQ:PL    0/1:16,13:29:99:439,0,653
7    123185857    rs3779262    A    T    96.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.77;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491033    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,167
7    123190493    rs4147636    A    ACTGGATACCACAAATC    7968.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=422.3356;IndelType=I;MQ=32.21;MQ0=0;QD=159.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490618    GT:AD:DP:GQ:PL    1/1:26,18:43:99:7969,120,0
7    123190714    .    G    A    334.35    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.844;DP=36;Dels=0.0;FS=9.717;HRun=3;HaplotypeScore=0.6651;MQ=53.09;MQ0=0;MQRankSum=-1.496;QD=9.29;ReadPosRankSum=0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490618    GT:AD:DP:GQ:PL    0/1:21,15:36:99:364,0,515
7    123196661    .    C    CA    149.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DP=15;FS=0.0;HRun=13;HaplotypeScore=84.8791;IndelType=I;MQ=59.91;MQ0=0;MQRankSum=-1.106;QD=10.0;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340034    GT:AD:DP:GQ:PL    0/1:5,10:15:28.72:189,0,29
7    123196718    rs73222282    T    C    722.31    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.513;DB;DP=37;Dels=0.0;FS=1.496;HRun=0;HaplotypeScore=0.0;MQ=60.26;MQ0=0;MQRankSum=0.321;QD=19.52;ReadPosRankSum=1.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340034    GT:AD:DP:GQ:PL    0/1:16,21:37:99:752,0,404
7    123196787    rs113495801    C    CA    615.37    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.741;DB;DP=46;FS=2.996;HRun=6;HaplotypeScore=141.4528;IndelType=I;MQ=60.21;MQ0=0;MQRankSum=0.617;QD=13.38;ReadPosRankSum=-0.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340034    GT:AD:DP:GQ:PL    0/1:25,21:46:99:654,0,627
7    123256427    rs6962756    C    T    1265.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=P57L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123256418_123256549;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275699    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1299,99,0
7    123256643    rs6963354    G    T    282.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437535    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
7    123264804    rs11769381    C    T    1534.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=V211;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123264623_123264868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275699    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1568,123,0
7    123267310    rs116956332    C    T    199.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.052;DB;DP=21;Dels=0.0;FS=2.046;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.261;QD=9.48;ReadPosRankSum=0.485;SNPEFF_AMINO_ACID_CHANGE=R282*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_7_123267164_123267335;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB15;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000275699    GT:AD:DP:GQ:PL    0/1:14,7:21:99:229,0,449
7    123269118    rs4731112    G    C    2173.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=G146A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123268918_123269427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542545    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2207,169,0
7    123269819    rs7799354    A    G    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447789    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    123269976    rs3993666    G    GGC    2953.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=156.4911;IndelType=I;MQ=58.62;MQ0=1;QD=54.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447789    GT:AD:DP:GQ:PL    1/1:5,49:53:99:2996,151,0
7    123295964    rs7779099    C    T    862.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_123295920_123296290;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMOD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332074    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:896,66,0
7    123296320    rs12538876    C    A    337.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332074    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:370,30,0
7    123301940    rs7809453    A    G    1832.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=30.04;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMOD2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000332074    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1865,141,0
7    123303477    rs2286831    A    G    170.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332074    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
7    123324546    rs35443790    AAT    A    473.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=85.5768;IndelType=D;MQ=61.78;MQ0=0;QD=26.3;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223023    GT:AD:DP:GQ:PL    1/1:4,14:18:42.13:515,42,0
7    123329046    rs62472074    C    T    1281.34    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.5;MQ0=0;MQRankSum=-0.612;QD=13.49;ReadPosRankSum=0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223023    GT:AD:DP:GQ:PL    0/1:49,46:95:99:1311,0,1658
7    123329060    rs34380130    GTC    G    1740.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DB;DP=108;FS=7.051;HRun=0;HaplotypeScore=731.9084;IndelType=D;MQ=59.1;MQ0=0;MQRankSum=1.347;QD=16.11;ReadPosRankSum=1.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223023    GT:AD:DP:GQ:PL    1/1:29,54:108:99:1782,199,0
7    123334696    rs35280100    GT    G    1039.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=2;HaplotypeScore=76.7114;IndelType=D;MQ=60.33;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223023    GT:AD:DP:GQ:PL    1/1:1,28:29:84.27:1082,84,0
7    123335806    .    A    T    39.46    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7552;MQ=57.66;MQ0=0;MQRankSum=0.741;QD=3.95;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223023    GT:AD:DP:GQ:PL    0/1:6,4:10:69.45:69,0,215
7    123347063    rs2215554    A    C    125.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470644    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
7    123388732    rs62472101    G    A    208.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_AMINO_ACID_CHANGE=S19;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123388672_123389121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223023    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
7    123509163    .    A    C    627.40    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.762;DP=49;Dels=0.0;FS=1.101;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.066;QD=12.8;ReadPosRankSum=-2.535;SNPEFF_AMINO_ACID_CHANGE=K279T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_123508277_123509281;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYAL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223026    GT:AD:DP:GQ:PL    0/1:26,23:49:99:657,0,799
7    123514617    rs36931    T    C    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223026    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
7    124116470    rs2402730    A    G    1032.04    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.581;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.74;MQ0=0;MQRankSum=0.536;QD=13.58;ReadPosRankSum=0.685;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP5-1106E3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473520    GT:AD:DP:GQ:PL    0/1:36,40:76:99:1062,0,1193
7    124117143    rs10954027    C    G    749.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=39.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP5-1106E3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473520    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:783,57,0
7    124387092    rs3735270    C    G    2275.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=L443;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_124386051_124387397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303921    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2309,169,0
7    124387374    rs724356    A    G    817.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=T349;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_124386051_124387397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303921    GT:AD:DP:GQ:PL    1/1:0,26:26:69.19:851,69,0
7    124462388    rs75558173    G    GA    262.61    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.205;DB;DP=22;FS=0.0;HRun=4;HaplotypeScore=54.4986;IndelType=I;MQ=61.46;MQ0=0;MQRankSum=1.603;QD=11.94;ReadPosRankSum=-0.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357628    GT:AD:DP:GQ:PL    0/1:13,9:22:99:302,0,376
7    124462661    rs17246404    C    T    337.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.681;QD=21.11;ReadPosRankSum=1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393326    GT:AD:DP:GQ:PL    0/1:6,10:16:99:368,0,164
7    124465509    rs10250202    A    C    109.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=18.27;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265391    GT:AD:DP:GQ:PL    0/1:2,4:6:57.14:140,0,57
7    124469267    rs10263573    A    T    541.99    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.145;DB;DP=50;Dels=0.0;FS=2.872;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.84;ReadPosRankSum=1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265391    GT:AD:DP:GQ:PL    0/1:29,21:50:99:572,0,935
7    124475296    rs111778454    TAAACA    T    247.62    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=152.5793;IndelType=D;MQ=57.53;MQ0=0;MQRankSum=1.12;QD=13.03;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265391    GT:AD:DP:GQ:PL    0/1:9,6:19:99:287,0,572
7    124480869    rs3213667    T    C    58.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.7;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466483    GT:AD:DP:GQ:PL    0/1:3,3:6:88.18:88,0,103
7    124481245    rs3815221    G    A    714.82    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.6;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.98;MQ0=0;MQRankSum=1.285;QD=10.51;ReadPosRankSum=1.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265391    GT:AD:DP:GQ:PL    0/1:43,25:68:99:745,0,1315
7    124486980    rs7794637    T    C    1458.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265391    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1491,108,0
7    124503196    rs4397336    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265391    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    124783064    rs55905546    A    C    115.12    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=14.39;ReadPosRankSum=0.322;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-3B12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435452    GT:AD:DP:GQ:PL    0/1:3,5:8:69.72:145,0,70
7    124783083    rs55859595    G    T    177.55    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.244;QD=14.8;ReadPosRankSum=1.309;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-3B12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435452    GT:AD:DP:GQ:PL    0/1:5,7:12:99:208,0,147
7    125680339    rs10268740    G    A    149.63    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=16.63;ReadPosRankSum=0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC003968.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408491    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,101
7    125680408    rs1419539    G    A    85.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=10.64;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC003968.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408491    GT:AD:DP:GQ:PL    0/1:3,5:8:71.48:115,0,71
7    126085909    rs2106193    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339582    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    126086022    rs17663242    C    T    259.51    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=23.59;ReadPosRankSum=-0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339582    GT:AD:DP:GQ:PL    0/1:3,8:11:95.86:290,0,96
7    126086436    rs56884588    G    GA    225.90    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.708;DB;DP=33;FS=0.0;HRun=10;HaplotypeScore=97.1691;IndelType=I;MQ=59.63;MQ0=0;MQRankSum=0.427;QD=6.85;ReadPosRankSum=0.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339582    GT:AD:DP:GQ:PL    0/1:21,11:33:99:265,0,337
7    126544012    rs769199    T    C    483.08    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=71;Dels=0.0;FS=7.252;HRun=0;HaplotypeScore=2.6278;MQ=44.11;MQ0=4;MQRankSum=-6.113;QD=6.8;ReadPosRankSum=1.121;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457830    GT:AD:DP:GQ:PL    0/1:42,29:71:99:513,0,1293
7    126544422    rs1008274    T    C    39.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339582    GT:AD:DP:GQ:PL    0/1:2,3:5:67.97:69,0,68
7    127015257    rs6973862    T    C    241.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF800;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439506    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
7    127026342    rs6962137    G    A    196.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF800;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265827    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
7    127222157    rs3735644    G    A    911.78    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.32;MQ0=0;MQRankSum=0.634;QD=13.41;ReadPosRankSum=-0.157;SNPEFF_AMINO_ACID_CHANGE=L747;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127220672_127223363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321407    GT:AD:DP:GQ:PL    0/1:32,36:68:99:942,0,945
7    127224193    rs3735643    A    G    237.33    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.037;DB;DP=34;Dels=0.0;FS=1.721;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=6.98;ReadPosRankSum=0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321407    GT:AD:DP:GQ:PL    0/1:23,11:34:99:267,0,753
7    127224286    rs3735642    A    G    480.06    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.333;DB;DP=51;Dels=0.0;FS=2.43;HRun=4;HaplotypeScore=2.8518;MQ=60.0;MQ0=0;MQRankSum=-0.192;QD=9.41;ReadPosRankSum=-0.374;SNPEFF_AMINO_ACID_CHANGE=D317;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127224205_127225661;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321407    GT:AD:DP:GQ:PL    0/1:28,23:51:99:510,0,930
7    127228728    rs12536382    C    T    77.64    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.731;QD=15.53;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473728    GT:AD:DP:GQ:PL    0/1:1,4:5:28.61:108,0,29
7    127229347    rs3735641    A    G    114.30    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=7.62;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473728    GT:AD:DP:GQ:PL    0/1:10,5:15:99:144,0,352
7    127230276    rs1419428    A    C    130.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=13.02;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459680    GT:AD:DP:GQ:PL    0/1:4,6:10:99:160,0,135
7    127234121    rs806212    C    T    88.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=11.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000000233    GT:AD:DP:GQ:PL    0/1:4,4:8:99:119,0,119
7    127238868    rs806217    A    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FSCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421705    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    127240094    rs806219    T    G    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FSCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421705    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
7    127240285    .    C    T    425.78    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.257;DP=41;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.284;QD=10.38;ReadPosRankSum=2.314;SNPEFF_AMINO_ACID_CHANGE=H308Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127240253_127240446;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FSCN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420086    GT:AD:DP:GQ:PL    0/1:26,15:41:99:456,0,770
7    127251188    rs712701    T    G    93.94    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=2.463;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=8.54;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=H319P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127250992_127251260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463946    GT:AD:DP:GQ:PL    0/1:6,5:11:99:124,0,191
7    127251792    rs327518    G    A    680.38    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.711;DB;DP=32;Dels=0.0;FS=5.294;HRun=0;HaplotypeScore=1.4105;MQ=59.28;MQ0=0;MQRankSum=0.021;QD=21.26;ReadPosRankSum=0.148;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477423    GT:AD:DP:GQ:PL    0/1:10,22:32:99:710,0,246
7    127253550    rs2233580    C    T    767.36    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=3.998;DB;DP=58;Dels=0.0;FS=5.908;HRun=0;HaplotypeScore=2.6457;MQ=59.2;MQ0=0;MQRankSum=0.194;QD=13.23;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=R190H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127253504_127253586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000463946    GT:AD:DP:GQ:PL    0/1:31,25:58:99:797,0,856
7    127253714    rs3835004    A    AG    881.35    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.711;DB;DP=46;FS=1.413;HRun=0;HaplotypeScore=120.9006;IndelType=I;MQ=59.5;MQ0=0;MQRankSum=-0.783;QD=19.16;ReadPosRankSum=-2.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338516    GT:AD:DP:GQ:PL    0/1:24,22:46:99:920,0,829
7    127255285    rs698406    C    G    108.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.82;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338516    GT:AD:DP:GQ:PL    0/1:6,4:10:99:138,0,182
7    127255795    rs327516    C    G    62.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.47;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338516    GT:AD:DP:GQ:PL    0/1:3,3:6:72.37:93,0,72
7    127347733    rs11972774    G    C    429.80    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=41;Dels=0.0;FS=5.561;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.663;QD=10.48;ReadPosRankSum=-1.962;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483503    GT:AD:DP:GQ:PL    0/1:26,15:41:99:460,0,870
7    127361269    rs918793    G    A    116.56    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.381;QD=8.97;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354725    GT:AD:DP:GQ:PL    0/1:8,5:13:99:147,0,266
7    127447499    rs325440    A    T    389.33    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.135;DB;DP=22;Dels=0.0;FS=6.193;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.801;QD=17.7;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354725    GT:AD:DP:GQ:PL    0/1:9,13:22:99:419,0,293
7    127669584    rs73238074    T    C    335.86    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.334;DB;DP=22;Dels=0.0;FS=1.885;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.336;QD=15.27;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=A370;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127667124_127670793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249363    GT:AD:DP:GQ:PL    0/1:9,13:22:99:366,0,286
7    127669857    rs3823994    A    T    483.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.028;DB;DP=36;Dels=0.0;FS=1.399;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=13.43;ReadPosRankSum=1.408;SNPEFF_AMINO_ACID_CHANGE=S279;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127667124_127670793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249363    GT:AD:DP:GQ:PL    0/1:18,18:36:99:513,0,584
7    127714491    rs225241    G    A    150.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354725    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:184,15,0
7    127721507    rs322825    T    C    182.21    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.064;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.919;QD=8.28;ReadPosRankSum=0.905;SNPEFF_AMINO_ACID_CHANGE=T174;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127721412_127721553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000486037    GT:AD:DP:GQ:PL    0/1:13,9:22:99:212,0,438
7    127725711    rs59096474    G    A    377.39    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.41;MQ0=0;MQRankSum=1.044;QD=9.68;ReadPosRankSum=-0.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470463    GT:AD:DP:GQ:PL    0/1:25,14:39:99:407,0,738
7    127731618    rs322820    T    C    176.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354725    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
7    127950725    rs12850    G    A    777.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4892;MQ=57.97;MQ0=0;QD=33.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495327    GT:AD:DP:GQ:PL    1/1:1,22:23:60.20:811,60,0
7    127957602    rs2290225    A    C    252.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223073    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:286,21,0
7    127992437    rs1651945    C    G    113.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.34;SNPEFF_AMINO_ACID_CHANGE=R391;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_127990380_127992732;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446477    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:146,12,0
7    127992854    rs6959179    T    G    116.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435512    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
7    128000091    rs359642    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_127999394_128000117;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435512    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    128038555    rs2288550    C    G    2060.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8316;MQ=59.62;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=L219;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128038468_128038667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IMPDH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343214    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2094,153,0
7    128041339    rs4731448    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IMPDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338791    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
7    128096678    rs2732394    T    C    1045.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257696    GT:AD:DP:GQ:PL    1/1:0,33:33:78.25:1079,78,0
7    128096800    rs149470219    C    T    164.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.73;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257696    GT:AD:DP:GQ:PL    0/1:6,6:12:99:195,0,204
7    128098071    rs1048531    G    A    2329.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.586;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=-0.756;QD=31.91;ReadPosRankSum=-0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435296    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2363,138,0
7    128098198    rs79181290    AT    A    545.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=50.9818;IndelType=D;MQ=56.62;MQ0=0;QD=38.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435296    GT:AD:DP:GQ:PL    1/1:1,13:14:42.14:588,42,0
7    128106870    rs2562733    T    A    334.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.71;MQ0=3;QD=23.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462662    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:368,33,0
7    128120484    rs3097359    G    A    1887.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.74;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262432    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1920,141,0
7    128128133    rs2732429    T    C    307.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.2;MQ0=16;QD=9.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473488    GT:AD:DP:GQ:PL    1/1:0,32:32:33.06:341,33,0
7    128128286    rs140236081    AG    A    1007.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=2;HaplotypeScore=73.1952;IndelType=D;MQ=41.28;MQ0=0;QD=35.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473488    GT:AD:DP:GQ:PL    1/1:0,28:27:81.26:1050,81,0
7    128133984    rs2562741    G    A    4039.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=39.99;MQ0=10;QD=30.15;SNPEFF_AMINO_ACID_CHANGE=V201I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128133858_128133997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000480046    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4040,343,0
7    128141638    rs7785264    G    A    157.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=31.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497665    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:191,15,0
7    128141865    rs1053124    T    C    5257.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=55.31;MQ0=0;QD=36.51;SNPEFF_AMINO_ACID_CHANGE=N108;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128141816_128141886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000481392    GT:AD:DP:GQ:PL    1/1:0,144:144:99:5258,400,0
7    128142023    rs12539729    A    T    2846.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.467;DB;DP=115;DS;Dels=0.0;FS=6.875;HRun=6;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.557;QD=24.75;ReadPosRankSum=0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497665    GT:AD:DP:GQ:PL    1/1:1,114:115:99:2880,241,0
7    128219096    .    G    T    185.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.07;MQ0=0;MQRankSum=0.248;QD=20.61;ReadPosRankSum=0.248;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479267    GT:AD:DP:GQ:PL    0/1:3,6:9:92.93:215,0,93
7    128220111    rs139965573    G    T    280.40    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=35;Dels=0.0;FS=3.682;HRun=0;HaplotypeScore=0.0;MQ=39.63;MQ0=8;MQRankSum=-1.092;QD=8.01;ReadPosRankSum=-1.334;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479267    GT:AD:DP:GQ:PL    0/1:20,15:35:99:310,0,375
7    128292780    rs62481928    G    A    44.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=49.16;MQ0=0;MQRankSum=0.736;QD=14.68;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC018638.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414464    GT:AD:DP:GQ:PL    0/1:1,2:3:15.67:74,0,16
7    128293873    rs141332315    G    A    247.45    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.669;DB;DP=23;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=42.19;MQ0=2;MQRankSum=-0.317;QD=10.76;ReadPosRankSum=0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465971    GT:AD:DP:GQ:PL    0/1:13,10:23:99:277,0,294
7    128294349    rs10227728    T    C    137.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=16;Dels=0.0;FS=5.569;HRun=0;HaplotypeScore=0.0;MQ=46.97;MQ0=0;MQRankSum=-3.203;QD=8.61;ReadPosRankSum=0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465971    GT:AD:DP:GQ:PL    0/1:8,8:16:99:168,0,251
7    128294406    rs60117311    G    A    126.76    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=48.17;MQ0=0;MQRankSum=1.668;QD=10.56;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465971    GT:AD:DP:GQ:PL    0/1:5,6:12:99:157,0,126
7    128294437    rs58123072    C    T    162.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=14;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=45.59;MQ0=0;MQRankSum=-2.627;QD=11.61;ReadPosRankSum=1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465971    GT:AD:DP:GQ:PL    0/1:7,7:14:99:192,0,163
7    128294446    rs9768910    A    G    318.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.27;MQ0=0;QD=22.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465971    GT:AD:DP:GQ:PL    1/1:0,14:14:33.05:352,33,0
7    128294449    rs60229418    G    A    165.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=14;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.0;MQ=41.27;MQ0=0;MQRankSum=-1.991;QD=11.85;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465971    GT:AD:DP:GQ:PL    0/1:6,8:14:99:196,0,100
7    128294760    rs59252189    T    C    279.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.17;MQ0=0;QD=27.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-274B21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465971    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:312,27,0
7    128312450    rs11769769    C    T    383.41    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.129;DB;DP=26;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.734;MQ=59.11;MQ0=0;MQRankSum=-0.283;QD=14.75;ReadPosRankSum=-1.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460349    GT:AD:DP:GQ:PL    0/1:12,14:26:99:413,0,382
7    128312676    rs116918896    T    C    170.25    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.509;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.57;MQ0=0;MQRankSum=-1.61;QD=8.96;ReadPosRankSum=-0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:11,8:19:99:200,0,361
7    128315588    rs13308199    T    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    128315672    rs78302479    A    ATTC    330.20    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=41.3843;IndelType=I;MQ=58.33;MQ0=0;MQRankSum=-0.377;QD=23.59;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:8,6:14:99:369,0,311
7    128315791    rs61738927    C    G    582.31    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.7;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.192;QD=14.2;ReadPosRankSum=-0.458;SNPEFF_AMINO_ACID_CHANGE=V72;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128315729_128315913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:18,23:41:99:612,0,472
7    128315882    rs17169357    C    A    642.62    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.728;DB;DP=50;Dels=0.0;FS=1.107;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.087;QD=12.85;ReadPosRankSum=-0.534;SNPEFF_AMINO_ACID_CHANGE=P103T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128315729_128315913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:24,26:50:99:673,0,760
7    128316003    rs17169368    T    C    54.01    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=4.15;ReadPosRankSum=0.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:10,3:13:84.01:84,0,320
7    128317443    rs6467209    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    128317658    rs6467210    C    T    505.31    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=2.636;DB;DP=50;Dels=0.0;FS=2.471;HRun=0;HaplotypeScore=0.0;MQ=53.69;MQ0=0;MQRankSum=0.333;QD=10.11;ReadPosRankSum=-0.758;SNPEFF_AMINO_ACID_CHANGE=R127W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128317618_128317867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:29,21:50:99:535,0,875
7    128317882    rs7797745    T    C    337.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.39;QD=9.63;ReadPosRankSum=1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:21,14:35:99:367,0,733
7    128317931    rs139645567    CTG    C    138.91    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=67.3538;IndelType=D;MQ=58.98;MQ0=0;MQRankSum=1.951;QD=11.58;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:7,5:12:99:178,0,228
7    128319982    rs2290229    A    T    135.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.29;ReadPosRankSum=1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460349    GT:AD:DP:GQ:PL    0/1:6,5:11:99:165,0,179
7    128322918    rs4554406    A    G    86.86    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.729;QD=9.65;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460349    GT:AD:DP:GQ:PL    0/1:5,4:9:99:117,0,176
7    128323034    rs1109552    A    G    684.30    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.319;DB;DP=66;Dels=0.0;FS=2.407;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.51;QD=10.37;ReadPosRankSum=0.537;SNPEFF_AMINO_ACID_CHANGE=I242V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128323018_128323309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM71F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378704    GT:AD:DP:GQ:PL    0/1:37,29:66:99:714,0,1227
7    128358891    rs745229    C    A    2477.62    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.362;DB;DP=169;Dels=0.0;FS=3.614;HRun=0;HaplotypeScore=1.5572;MQ=59.62;MQ0=0;MQRankSum=0.418;QD=14.66;ReadPosRankSum=-1.337;SNPEFF_AMINO_ACID_CHANGE=L147;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128358885_128359137;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315184    GT:AD:DP:GQ:PL    0/1:78,91:169:99:2508,0,2344
7    128359133    rs6949056    C    T    1286.54    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=3.693;DB;DP=103;Dels=0.0;FS=5.226;HRun=2;HaplotypeScore=1.8317;MQ=60.0;MQ0=0;MQRankSum=0.794;QD=12.49;ReadPosRankSum=0.46;SNPEFF_AMINO_ACID_CHANGE=S129L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128358946_128359137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000485070    GT:AD:DP:GQ:PL    0/1:56,47:103:99:1317,0,1290
7    128363287    rs6971091    G    A    2472.59    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=150;Dels=0.0;FS=2.281;HRun=1;HaplotypeScore=0.9992;MQ=59.85;MQ0=0;MQRankSum=-1.022;QD=16.48;ReadPosRankSum=1.136;SNPEFF_AMINO_ACID_CHANGE=E143K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128363251_128363372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000485070    GT:AD:DP:GQ:PL    0/1:70,80:150:99:2503,0,2236
7    128371206    rs339066    G    A    1727.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=30.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466842    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1761,129,0
7    128371288    rs41274146    A    T    135.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.85;MQ0=0;MQRankSum=-0.177;QD=9.04;ReadPosRankSum=-0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466842    GT:AD:DP:GQ:PL    0/1:9,6:15:99:166,0,321
7    128371415    rs101721    C    G    158.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466842    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
7    128388541    rs12538139    G    A    109.84    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=12.2;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249364    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,177
7    128394606    rs2307040    C    T    571.31    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=46;Dels=0.0;FS=2.695;HRun=0;HaplotypeScore=1.9924;MQ=60.0;MQ0=0;MQRankSum=0.353;QD=12.42;ReadPosRankSum=-0.617;SNPEFF_AMINO_ACID_CHANGE=A82V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128394583_128394776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALU;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449187    GT:AD:DP:GQ:PL    0/1:25,21:46:99:601,0,834
7    128399231    rs41274152    T    C    30.71    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.39;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249364    GT:AD:DP:GQ:PL    0/1:5,2:7:60.70:61,0,191
7    128409225    rs1043550    A    G    231.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.849;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=19.33;ReadPosRankSum=0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN1SW;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249389    GT:AD:DP:GQ:PL    0/1:3,9:12:87.11:262,0,87
7    128414484    rs17397588    T    C    594.35    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=49;Dels=0.0;FS=1.363;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.332;QD=12.13;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249364    GT:AD:DP:GQ:PL    0/1:26,23:49:99:624,0,823
7    128415195    rs1799922    T    G    315.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.916;DB;DP=24;Dels=0.0;FS=1.641;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=13.17;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=G122;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128415040_128415208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN1SW;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249389    GT:AD:DP:GQ:PL    0/1:12,12:24:99:346,0,357
7    128415290    rs17476081    C    T    129.04    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=14;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=3.9766;MQ=58.33;MQ0=0;MQRankSum=0.933;QD=9.22;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249364    GT:AD:DP:GQ:PL    0/1:9,5:14:99:159,0,273
7    128415860    rs3807128    C    T    281.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=27;Dels=0.0;FS=5.409;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.09;QD=10.42;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249364    GT:AD:DP:GQ:PL    0/1:15,12:27:99:311,0,468
7    128450532    rs7799186    G    A    795.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC136;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460941    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:829,66,0
7    128455767    rs4728137    C    G    1468.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.64;SNPEFF_AMINO_ACID_CHANGE=Q1049E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128455668_128455985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC136;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297788    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1501,111,0
7    128485240    rs146953558    C    T    452.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=48;Dels=0.0;FS=1.343;HRun=0;HaplotypeScore=0.7887;MQ=59.53;MQ0=0;MQRankSum=-0.539;QD=9.23;ReadPosRankSum=0.407;SNPEFF_AMINO_ACID_CHANGE=R1241C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128484712_128485309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325888    GT:AD:DP:GQ:PL    0/1:24,24:48:99:482,0,708
7    128485850    rs6947044    T    G    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=10.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388853    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:71,6,0
7    128487866    rs2249128    T    C    992.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.03;SNPEFF_AMINO_ACID_CHANGE=D1468;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128487751_128487918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325888    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1026,78,0
7    128488391    rs111993847    C    A    94.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.52;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325888    GT:AD:DP:GQ:PL    0/1:5,4:9:99:125,0,181
7    128520118    rs147956620    G    A    30.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.62;ReadPosRankSum=-1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297801    GT:AD:DP:GQ:PL    0/1:2,2:4:60.47:60,0,65
7    128533514    rs34061445    T    TC    597.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=31.5561;IndelType=I;MQ=61.43;MQ0=0;QD=39.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257704    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:639,45,0
7    128548304    rs11385711    G    GA    264.69    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=61.7307;IndelType=I;MQ=56.09;MQ0=0;MQRankSum=1.377;QD=24.06;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC025594.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408474    GT:AD:DP:GQ:PL    0/1:4,7:11:78.52:304,0,79
7    128550680    rs67151206    GC    G    196.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=5;HaplotypeScore=20.7054;IndelType=D;MQ=61.53;MQ0=0;QD=28.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC025594.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408474    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:238,21,0
7    128587351    .    CACTCTGCAGCCGCCCACTCTGCGGCCGCCT    C    290.32    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DP=18;FS=4.393;HRun=0;HaplotypeScore=426.7916;IndelType=D;MQ=56.91;MQ0=0;MQRankSum=-0.278;QD=16.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000412326    GT:AD:DP:GQ:PL    0/1:10,8:18:99:329,0,934
7    128597198    .    G    T    94.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=9.48;ReadPosRankSum=2.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471166    GT:AD:DP:GQ:PL    0/1:6,4:10:99:125,0,165
7    128607384    rs8043    G    A    608.73    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.95;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.783;MQ=59.21;MQ0=0;MQRankSum=-0.707;QD=11.49;ReadPosRankSum=-0.499;SNPEFF_AMINO_ACID_CHANGE=A821;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128607334_128607446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000482320    GT:AD:DP:GQ:PL    0/1:27,25:52:99:639,0,749
7    128610484    rs1691779    A    G    750.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.49;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:783,57,0
7    128629993    rs41274158    A    G    430.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.091;DB;DP=36;Dels=0.0;FS=9.464;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=11.97;ReadPosRankSum=-1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    0/1:20,16:36:99:461,0,678
7    128630227    rs1154329    C    T    1150.13    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=3.54;DB;DP=68;Dels=0.0;FS=0.923;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.547;QD=16.91;ReadPosRankSum=-1.314;SNPEFF_AMINO_ACID_CHANGE=R463H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128630015_128630256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393245    GT:AD:DP:GQ:PL    0/1:31,37:68:99:1180,0,860
7    128630313    rs6969930    T    C    543.95    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.544;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.244;QD=14.7;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    0/1:17,20:37:99:574,0,477
7    128640334    rs4728144    A    T    144.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=14;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=10.35;ReadPosRankSum=-2.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    0/1:7,7:14:99:175,0,243
7    128641226    rs2305324    G    C    1855.96    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DB;DP=138;Dels=0.0;FS=0.634;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=0.685;QD=13.45;ReadPosRankSum=1.686;SNPEFF_AMINO_ACID_CHANGE=L187;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128641113_128641288;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000482320    GT:AD:DP:GQ:PL    0/1:75,63:138:99:1886,0,2226
7    128645292    rs11768572    A    C    611.92    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.103;DB;DP=45;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.7887;MQ=59.73;MQ0=0;MQRankSum=0.919;QD=13.6;ReadPosRankSum=2.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    0/1:24,21:45:99:642,0,763
7    128645358    rs35061509    GT    G    64.12    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.426;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=74.7509;IndelType=D;MQ=59.13;MQ0=0;MQRankSum=0.583;QD=4.58;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    0/1:8,6:14:99:103,0,147
7    128654840    rs2305325    T    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
7    128657277    rs3857852    T    C    72.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    0/1:2,3:5:70.24:103,0,70
7    128694976    rs2242028    C    T    71.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=17.96;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNPO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265388    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:104,9,0
7    128766505    rs6952057    A    C    140.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.53;MQ0=0;QD=28.06;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-286H14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467614    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:173,15,0
7    128766528    rs10464697    G    C    272.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.73;MQ0=0;QD=27.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-286H14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467614    GT:AD:DP:GQ:PL    1/1:1,9:10:27.05:306,27,0
7    128766533    rs10464698    A    C    308.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=40.32;MQ0=0;QD=28.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-286H14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467614    GT:AD:DP:GQ:PL    1/1:0,11:11:30.06:342,30,0
7    128766553    rs6952077    A    G    263.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.27;MQ0=0;QD=18.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-286H14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467614    GT:AD:DP:GQ:PL    1/1:0,14:14:30.03:297,30,0
7    128767410    rs10247566    A    G    344.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=28.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-286H14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467614    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:378,27,0
7    128767490    rs7809681    T    C    322.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=29.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-286H14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467614    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:355,27,0
7    128767506    rs7809687    T    G    371.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=26.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-286H14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467614    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:404,33,0
7    128802936    rs919551    T    C    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289407    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    128804218    rs2566892    G    A    552.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289407    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:586,42,0
7    128807338    .    C    G    1361.06    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.242;DP=91;Dels=0.0;FS=1.8;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.322;QD=14.96;ReadPosRankSum=-0.87;SNPEFF_AMINO_ACID_CHANGE=V229;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128807240_128807401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289407    GT:AD:DP:GQ:PL    0/1:44,47:91:99:1391,0,1291
7    128844953    rs13223446    C    A    213.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.6;MQ0=0;MQRankSum=0.222;QD=11.85;ReadPosRankSum=-0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:10,8:18:99:243,0,352
7    128845018    rs2703091    C    T    420.83    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=35;Dels=0.0;FS=1.414;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.175;QD=12.02;ReadPosRankSum=0.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:16,19:35:99:451,0,413
7    128845277    rs2075777    G    C    97.25    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=17;Dels=0.0;FS=2.158;HRun=3;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=2.161;QD=5.72;ReadPosRankSum=-1.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:11,6:17:99:127,0,313
7    128845299    rs34894139    T    C    327.39    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.206;DB;DP=19;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.041;QD=17.23;ReadPosRankSum=1.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:8,11:19:99:357,0,248
7    128845325    rs2566872    G    A    146.30    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.079;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.786;MQ=58.84;MQ0=0;MQRankSum=0.0;QD=7.32;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:13,7:20:99:176,0,432
7    128845702    rs2075778    C    T    58.07    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.636;QD=4.15;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:10,4:14:88.07:88,0,309
7    128845907    rs2075779    T    C    298.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.267;QD=19.87;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:5,10:15:99:328,0,168
7    128846207    rs35678076    G    A    1030.64    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=1.846;DB;DP=71;Dels=0.0;FS=1.95;HRun=0;HaplotypeScore=0.9832;MQ=59.74;MQ0=0;MQRankSum=-0.857;QD=14.52;ReadPosRankSum=-1.351;SNPEFF_AMINO_ACID_CHANGE=A379;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128845991_128846210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:36,35:71:99:1061,0,1093
7    128846328    rs2228617    G    C    1488.30    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=90;Dels=0.0;FS=0.811;HRun=0;HaplotypeScore=1.8583;MQ=59.72;MQ0=0;MQRankSum=-2.302;QD=16.54;ReadPosRankSum=0.605;SNPEFF_AMINO_ACID_CHANGE=G388;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128846305_128846428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:40,50:90:99:1518,0,1102
7    128846469    rs2735842    A    G    628.97    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.385;DB;DP=54;Dels=0.0;FS=1.179;HRun=0;HaplotypeScore=1.8401;MQ=59.14;MQ0=0;MQRankSum=0.938;QD=11.65;ReadPosRankSum=1.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:29,24:54:99:659,0,860
7    128846557    rs10622446    C    CAG    519.39    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.431;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=68.0913;IndelType=I;MQ=58.3;MQ0=0;MQRankSum=-1.444;QD=24.73;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:11,10:21:99:558,0,326
7    128850167    rs13242765    A    G    495.90    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.387;DB;DP=32;Dels=0.0;FS=5.992;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.007;QD=15.5;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495998    GT:AD:DP:GQ:PL    0/1:14,18:32:99:526,0,459
7    128850875    rs2016607    T    C    436.49    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.649;DB;DP=52;Dels=0.0;FS=2.499;HRun=1;HaplotypeScore=1.8666;MQ=60.0;MQ0=0;MQRankSum=-1.081;QD=8.39;ReadPosRankSum=-0.079;SNPEFF_AMINO_ACID_CHANGE=S574;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_128850806_128850954;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249373    GT:AD:DP:GQ:PL    0/1:30,22:52:99:466,0,967
7    129028857    rs35404531    AT    A    475.30    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=2.292;DB;DP=44;FS=8.959;HRun=11;HaplotypeScore=122.553;IndelType=D;MQ=59.44;MQ0=0;MQRankSum=1.049;QD=10.8;ReadPosRankSum=-0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325006    GT:AD:DP:GQ:PL    0/1:18,26:44:99:514,0,386
7    129029093    rs10954231    A    G    128.84    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.264;QD=7.58;ReadPosRankSum=0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460109    GT:AD:DP:GQ:PL    0/1:12,5:17:99:159,0,415
7    129029391    rs1541711    C    T    69.04    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.63;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460109    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,183
7    129037029    rs17168750    G    C    643.88    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=20.77;ReadPosRankSum=-0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325006    GT:AD:DP:GQ:PL    0/1:10,21:31:99:674,0,310
7    129040018    rs17552411    T    C    154.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.39;MQ0=0;MQRankSum=0.956;QD=17.2;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461161    GT:AD:DP:GQ:PL    0/1:3,6:9:90.70:185,0,91
7    129045191    rs2402951    A    G    1165.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=38.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491079    GT:AD:DP:GQ:PL    1/1:0,30:30:90.26:1198,90,0
7    129045986    rs10224011    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492628    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    129049507    rs6467244    A    G    89.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492628    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
7    129067053    rs4728164    T    C    71.62    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.23;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474594    GT:AD:DP:GQ:PL    0/1:3,4:7:99:102,0,104
7    129091302    rs4731578    A    G    368.70    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.287;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.231;QD=19.41;ReadPosRankSum=-0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249344    GT:AD:DP:GQ:PL    0/1:5,14:19:99:399,0,150
7    129094195    rs581829    T    C    429.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249344    GT:AD:DP:GQ:PL    1/1:0,13:14:36.10:463,36,0
7    129096534    rs753336    A    G    111.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.99;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249344    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,143
7    129102743    rs34275118    A    G    247.76    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.319;DB;DP=29;Dels=0.0;FS=2.049;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.952;QD=8.54;ReadPosRankSum=0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465033    GT:AD:DP:GQ:PL    0/1:16,13:29:99:278,0,516
7    129104269    rs691183    T    A    116.94    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.39;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465033    GT:AD:DP:GQ:PL    0/1:1,4:5:20.20:147,0,20
7    129122570    rs62489116    C    G    246.32    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=17.59;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249344    GT:AD:DP:GQ:PL    0/1:5,9:14:99:276,0,172
7    129125352    rs10500117    C    G    39.83    QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.122;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.45;MQ0=0;MQRankSum=0.667;QD=1.9;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435494    GT:AD:DP:GQ:PL    0/1:14,7:21:69.82:70,0,415
7    129125750    rs692625    G    A    514.12    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.079;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;MQRankSum=-1.607;QD=19.77;ReadPosRankSum=-1.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435494    GT:AD:DP:GQ:PL    0/1:10,16:26:99:544,0,313
7    129125825    rs676947    T    C    170.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435494    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
7    129297332    rs1882094    T    G    707.60    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.106;DB;DP=69;Dels=0.0;FS=2.07;HRun=0;HaplotypeScore=0.0;MQ=57.62;MQ0=0;MQRankSum=-0.994;QD=10.26;ReadPosRankSum=-0.673;SNPEFF_AMINO_ACID_CHANGE=S47;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129297183_129297414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223190    GT:AD:DP:GQ:PL    0/1:38,31:69:99:738,0,1153
7    129479138    rs12539800    T    C    718.27    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=3.126;DB;DP=42;Dels=0.0;FS=4.873;HRun=0;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;MQRankSum=1.461;QD=17.1;ReadPosRankSum=0.487;SNPEFF_AMINO_ACID_CHANGE=L112;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129479047_129479175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355621    GT:AD:DP:GQ:PL    0/1:17,25:42:99:748,0,495
7    129497498    rs718925    C    T    114.95    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.0;QD=8.21;ReadPosRankSum=-2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355621    GT:AD:DP:GQ:PL    0/1:9,5:14:99:145,0,313
7    129498661    rs12532959    C    T    523.43    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.613;QD=22.76;ReadPosRankSum=-0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355621    GT:AD:DP:GQ:PL    0/1:8,15:23:99:553,0,262
7    129588899    .    T    A    619.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.433;DP=46;Dels=0.0;FS=2.716;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.117;QD=13.47;ReadPosRankSum=0.705;SNPEFF_AMINO_ACID_CHANGE=M1L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_START;SNPEFF_EXON_ID=exon_7_129588799_129588942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000490974    GT:AD:DP:GQ:PL    0/1:23,23:46:99:649,0,708
7    129592510    rs1045897    G    T    320.82    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.275;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=61.73;MQ0=0;MQRankSum=2.086;QD=13.37;ReadPosRankSum=0.29;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_129592343_129592789;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355621    GT:AD:DP:GQ:PL    0/1:13,11:24:99:351,0,416
7    129592541    rs71175052    GC    G    113.11    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=14;FS=0.0;HRun=6;HaplotypeScore=107.4165;IndelType=D;MQ=62.93;MQ0=0;MQRankSum=2.843;QD=8.08;ReadPosRankSum=-0.467;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473814    GT:AD:DP:GQ:PL    0/1:8,6:14:99:152,0,201
7    129658259    rs1997081    T    C    77.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.75;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311873    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
7    129658655    rs2242488    A    G    907.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471022    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:940,69,0
7    129663259    rs11762946    C    T    250.03    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.208;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.103;QD=14.71;ReadPosRankSum=1.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471022    GT:AD:DP:GQ:PL    0/1:8,9:17:99:280,0,270
7    129664312    rs1464890    T    C    492.67    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.227;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.53;QD=11.2;ReadPosRankSum=-0.082;SNPEFF_AMINO_ACID_CHANGE=T250A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129664103_129664346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311873    GT:AD:DP:GQ:PL    0/1:24,20:44:99:523,0,811
7    129680648    rs34942899    CA    C    229.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.071;DB;DP=22;FS=0.0;HRun=15;HaplotypeScore=108.5397;IndelType=D;MQ=55.0;MQ0=0;MQRankSum=-0.063;QD=10.45;ReadPosRankSum=-0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311873    GT:AD:DP:GQ:PL    1/1:5,17:22:4.64:270,5,0
7    129680994    rs34409527    A    ATG    1798.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.046;DB;DP=86;FS=0.0;HRun=0;HaplotypeScore=324.9124;IndelType=I;MQ=60.24;MQ0=0;MQRankSum=0.445;QD=20.92;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311873    GT:AD:DP:GQ:PL    1/1:42,42:86:32.97:1841,33,0
7    129691309    rs867704    C    G    34.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.73;ReadPosRankSum=-0.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311873    GT:AD:DP:GQ:PL    0/1:4,2:6:64.35:64,0,142
7    129736880    rs12531444    G    A    903.32    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.482;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.53;MQ0=0;MQRankSum=-0.339;QD=18.44;ReadPosRankSum=0.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335420    GT:AD:DP:GQ:PL    0/1:19,30:49:99:933,0,574
7    129806363    rs6467284    A    T    147.51    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=13.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM209;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336804    GT:AD:DP:GQ:PL    0/1:3,8:11:98.16:178,0,98
7    129806441    rs4507710    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM209;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336804    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    129843689    rs35299461    G    GA    634.07    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.218;DB;DP=56;FS=0.0;HRun=8;HaplotypeScore=160.0839;IndelType=I;MQ=59.17;MQ0=0;MQRankSum=-0.255;QD=11.32;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM209;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336804    GT:AD:DP:GQ:PL    0/1:34,22:56:99:673,0,584
7    129847482    rs2727837    C    T    1964.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.58;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM209;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471985    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1998,156,0
7    129853531    rs2727840    C    A    78.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297819    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
7    129906915    rs7788519    G    A    67.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=11.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222481    GT:AD:DP:GQ:PL    0/1:2,4:6:69.36:97,0,69
7    129908630    rs6467291    A    G    116.87    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.37;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222481    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:147,0,25
7    129916325    rs41274170    C    T    290.27    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=17.07;ReadPosRankSum=-1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480781    GT:AD:DP:GQ:PL    0/1:8,9:17:99:320,0,278
7    129916515    rs17590    T    C    1653.46    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.665;DB;DP=111;Dels=0.0;FS=2.601;HRun=0;HaplotypeScore=4.2861;MQ=59.79;MQ0=0;MQRankSum=0.116;QD=14.9;ReadPosRankSum=1.004;SNPEFF_AMINO_ACID_CHANGE=D211;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129916468_129916578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222481    GT:AD:DP:GQ:PL    0/1:48,62:111:99:1683,0,1312
7    129929673    rs73146781    C    T    173.68    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=15.79;ReadPosRankSum=0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222481    GT:AD:DP:GQ:PL    0/1:5,6:11:99:204,0,167
7    129938598    rs34587586    G    T    417.02    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.496;DB;DP=44;Dels=0.0;FS=2.636;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.435;QD=9.48;ReadPosRankSum=-1.205;SNPEFF_AMINO_ACID_CHANGE=L27F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129938586_129938667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222482    GT:AD:DP:GQ:PL    0/1:27,17:44:99:447,0,811
7    129940561    rs12538292    G    A    258    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=19.85;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497388    GT:AD:DP:GQ:PL    0/1:5,8:13:99:288,0,135
7    129944188    rs58377343    G    A    34.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.81;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497388    GT:AD:DP:GQ:PL    0/1:4,2:6:64.84:65,0,115
7    129950740    rs2171492    G    T    2088.42    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.852;DB;DP=156;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=1.9964;MQ=59.33;MQ0=0;MQRankSum=-0.264;QD=13.39;ReadPosRankSum=-1.978;SNPEFF_AMINO_ACID_CHANGE=G108C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129950627_129950826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538687    GT:AD:DP:GQ:PL    0/1:81,74:156:99:2118,0,2247
7    129950879    rs901800    G    A    513.70    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.09;QD=12.23;ReadPosRankSum=-0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473956    GT:AD:DP:GQ:PL    0/1:24,18:42:99:544,0,779
7    129962360    rs1569133    A    G    2589.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=A175;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129962329_129963139;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538687    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2623,211,0
7    129962682    rs11760971    A    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.15;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222482    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
7    129986156    rs11761867    G    A    72.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.94;MQ0=0;MQRankSum=0.988;QD=12.1;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355388    GT:AD:DP:GQ:PL    0/1:3,3:6:79.83:103,0,80
7    129986226    rs6955991    T    A    64.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=7.2;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355388    GT:AD:DP:GQ:PL    0/1:6,3:9:94.80:95,0,205
7    129986236    rs6955995    T    C    64.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.66;MQ0=0;MQRankSum=0.248;QD=6.48;ReadPosRankSum=2.054;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_129986234_129986442;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431780    GT:AD:DP:GQ:PL    0/1:6,4:10:94.84:95,0,174
7    129986338    rs6973851    C    T    485.20    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.611;DB;DP=36;Dels=0.0;FS=6.412;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.007;QD=13.48;ReadPosRankSum=0.611;SNPEFF_AMINO_ACID_CHANGE=T4;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129986248_129986442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355388    GT:AD:DP:GQ:PL    0/1:19,17:36:99:515,0,640
7    129986521    rs6467306    T    C    79.71    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=22;Dels=0.0;FS=6.232;HRun=3;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.702;QD=3.62;ReadPosRankSum=0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494311    GT:AD:DP:GQ:PL    0/1:17,5:22:99:110,0,587
7    129987734    rs71579248    G    T    124.95    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=8.92;ReadPosRankSum=1.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494311    GT:AD:DP:GQ:PL    0/1:9,5:14:99:155,0,319
7    129987837    rs4731682    A    G    136.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494311    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
7    129989559    rs11272432    ACAAAAATTAAAAATTACAAAAAAACCTGTATCC    A    1078.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=245.328;IndelType=D;MQ=35.07;MQ0=0;QD=154.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494311    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:1120,21,0
7    129989878    rs7808823    T    C    2847.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.315;DB;DP=91;Dels=0.0;FS=3.324;HRun=1;HaplotypeScore=0.9332;MQ=59.75;MQ0=0;MQRankSum=-1.063;QD=31.29;ReadPosRankSum=-0.512;SNPEFF_AMINO_ACID_CHANGE=S87;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_129989816_129989950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355388    GT:AD:DP:GQ:PL    1/1:1,90:91:99:2880,184,0
7    129990103    rs10247573    G    A    291.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494311    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:325,27,0
7    129990135    rs6957041    A    G    168.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494311    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
7    130002317    rs1544705    T    C    989.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=I191;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_130002279_130002380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355388    GT:AD:DP:GQ:PL    1/1:0,29:30:81.23:1022,81,0
7    130007901    rs2241272    A    T    173.15    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=17;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=10.19;ReadPosRankSum=-1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355388    GT:AD:DP:GQ:PL    0/1:10,7:17:99:203,0,300
7    130008159    rs2302823    A    G    242.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=16.19;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355388    GT:AD:DP:GQ:PL    0/1:6,9:15:99:273,0,195
7    130020569    rs7790688    A    G    166.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011292    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
7    130021488    rs1126899    G    C    571.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.2;SNPEFF_AMINO_ACID_CHANGE=G55;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_130021471_130021704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000011292    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:604,51,0
7    130023179    rs6972781    A    G    161.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011292    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
7    130023657    rs34925618    TG    T    884.55    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=4.65;DB;DP=56;FS=1.505;HRun=5;HaplotypeScore=164.508;IndelType=D;MQ=58.73;MQ0=0;MQRankSum=-0.282;QD=15.8;ReadPosRankSum=0.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481342    GT:AD:DP:GQ:PL    0/1:24,32:56:99:924,0,760
7    130024308    rs35325022    A    ACC    1524.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=6;HaplotypeScore=109.86;IndelType=I;MQ=58.55;MQ0=0;QD=44.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481342    GT:AD:DP:GQ:PL    1/1:1,31:34:99:1567,99,0
7    130025895    rs2239606    A    G    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470838    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
7    130027633    rs10263705    A    G    8659.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8109;MQ=59.63;MQ0=0;QD=34.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470838    GT:AD:DP:GQ:PL    1/1:0,248:250:99:8660,656,0
7    130080812    rs2287371    T    G    309.14    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.485;QD=8.36;ReadPosRankSum=-1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477003    GT:AD:DP:GQ:PL    0/1:23,14:37:99:339,0,656
7    130138155    rs6968284    A    G    1619.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.73;MQ0=0;QD=33.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399874    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1653,123,0
7    130148562    rs58927323    T    TTCTTAGGAAGTG    5379.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=207.4364;IndelType=I;MQ=33.28;MQ0=0;QD=179.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223215    GT:AD:DP:GQ:PL    1/1:11,16:30:90.31:5379,90,0
7    130148817    rs1047456    G    A    372.89    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.535;DB;DP=19;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=56.5;MQ0=0;MQRankSum=-1.184;QD=19.63;ReadPosRankSum=0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223215    GT:AD:DP:GQ:PL    0/1:6,13:19:99:403,0,187
7    130148903    rs12706941    A    G    120.34    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.689;QD=10.03;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223215    GT:AD:DP:GQ:PL    0/1:7,5:12:99:150,0,219
7    130149061    rs12706942    G    C    76.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.638;QD=9.51;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223215    GT:AD:DP:GQ:PL    0/1:4,4:8:99:106,0,136
7    130288689    .    GT    G    324.26    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DP=22;FS=2.282;HRun=2;HaplotypeScore=95.4051;IndelType=D;MQ=58.64;MQ0=0;MQRankSum=-0.532;QD=14.74;ReadPosRankSum=-2.051;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPG2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,13:22:99:363,0,344
7    130290223    rs115681645    A    G    1043.25    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.293;QD=21.73;ReadPosRankSum=0.539;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPG2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:17,31:48:99:1073,0,551
7    130293022    rs6970543    C    T    102.32    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=12;Dels=0.0;FS=3.802;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=8.53;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330992    GT:AD:DP:GQ:PL    0/1:7,5:12:99:132,0,263
7    130295525    rs7800717    T    C    871.28    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.686;DB;DP=68;Dels=0.0;FS=2.554;HRun=0;HaplotypeScore=0.9734;MQ=59.39;MQ0=0;MQRankSum=0.521;QD=12.81;ReadPosRankSum=1.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330992    GT:AD:DP:GQ:PL    0/1:39,29:68:99:901,0,1150
7    130297119    rs34699820    GA    G    892.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=11;HaplotypeScore=145.0466;IndelType=D;MQ=59.97;MQ0=0;QD=19.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330992    GT:AD:DP:GQ:PL    1/1:3,41:45:99:934,114,0
7    130298550    rs4731696    C    T    847.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330992    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:880,66,0
7    130351844    .    CA    C    131.77    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DP=13;FS=0.0;HRun=1;HaplotypeScore=45.4522;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=10.14;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356588    GT:AD:DP:GQ:PL    0/1:8,5:13:99:171,0,330
7    130351884    rs3804620    T    C    157.21    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356588    GT:AD:DP:GQ:PL    0/1:1,5:6:23.17:187,0,23
7    130353737    rs10232183    G    T    615.86    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.281;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.02;MQ0=0;MQRankSum=-0.015;QD=13.69;ReadPosRankSum=-0.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356588    GT:AD:DP:GQ:PL    0/1:23,22:45:99:646,0,448
7    130354106    rs10232683    G    C    529.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356588    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:563,42,0
7    130357518    rs2288080    C    T    380.26    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.18;DB;DP=31;Dels=0.0;FS=5.473;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-1.581;QD=12.27;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356588    GT:AD:DP:GQ:PL    0/1:18,13:31:99:410,0,621
7    130357763    rs76213788    T    C    106.28    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.881;QD=11.81;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSGA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356588    GT:AD:DP:GQ:PL    0/1:4,5:9:99:136,0,106
7    131060277    rs3823557    G    A    565.09    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.455;DB;DP=46;Dels=0.0;FS=4.091;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=12.28;ReadPosRankSum=1.125;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352689    GT:AD:DP:GQ:PL    0/1:25,21:46:99:595,0,850
7    131155588    rs1733861    G    T    439.55    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.215;DB;DP=36;Dels=0.0;FS=3.837;HRun=1;HaplotypeScore=0.9734;MQ=59.36;MQ0=0;MQRankSum=-1.507;QD=12.21;ReadPosRankSum=-0.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352689    GT:AD:DP:GQ:PL    0/1:19,16:36:99:470,0,583
7    131155764    rs1684172    T    C    185.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.191;QD=15.44;ReadPosRankSum=1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352689    GT:AD:DP:GQ:PL    0/1:6,6:12:99:215,0,192
7    131163354    rs5887508    C    CTT    202.70    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DB;DP=54;FS=0.0;HRun=21;HaplotypeScore=474.0171;IndelType=I;MQ=46.31;MQ0=0;MQRankSum=-2.165;QD=3.75;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352689    GT:AD:DP:GQ:PL    0/1:37,7:54:99:242,0,138
7    131191536    rs3212303    A    G    269.91    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=14.21;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PODXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465001    GT:AD:DP:GQ:PL    0/1:10,9:19:99:300,0,348
7    131191554    rs66804455    TC    T    182.34    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=69.8438;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=14.03;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PODXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465001    GT:AD:DP:GQ:PL    0/1:6,7:13:99:221,0,220
7    131191609    rs11770771    A    G    146.64    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=18.33;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PODXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465001    GT:AD:DP:GQ:PL    0/1:3,5:8:99:177,0,100
7    131193485    rs1733859    C    T    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PODXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465001    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
7    131195535    rs3847113    G    T    143.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.2;MQ0=0;MQRankSum=-0.377;QD=11.03;ReadPosRankSum=1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PODXL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465001    GT:AD:DP:GQ:PL    0/1:6,7:13:99:173,0,170
7    131195712    rs12670788    G    A    733.44    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.058;DB;DP=40;Dels=0.0;FS=10.328;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.585;QD=18.34;ReadPosRankSum=0.585;SNPEFF_AMINO_ACID_CHANGE=S184L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_131195587_131196192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PODXL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544955    GT:AD:DP:GQ:PL    0/1:18,22:40:99:763,0,546
7    131195959    rs3735035    C    T    1125.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.316;DB;DP=86;Dels=0.0;FS=13.946;HRun=0;HaplotypeScore=1.9915;MQ=59.73;MQ0=0;MQRankSum=1.059;QD=13.09;ReadPosRankSum=0.004;SNPEFF_AMINO_ACID_CHANGE=G102S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_131195587_131196192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PODXL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544955    GT:AD:DP:GQ:PL    0/1:43,43:86:99:1156,0,1234
7    131347009    rs3885619    T    C    5293    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.56;MQ0=1;QD=29.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC093106.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445713    GT:AD:DP:GQ:PL    1/1:0,180:180:99:5293,418,0
7    131626120    rs17193209    G    T    1336.63    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.432;DB;DP=98;Dels=0.0;FS=3.228;HRun=1;HaplotypeScore=2.8771;MQ=59.53;MQ0=0;MQRankSum=1.99;QD=13.64;ReadPosRankSum=-0.954;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC009518.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415393    GT:AD:DP:GQ:PL    0/1:53,45:98:99:1367,0,1650
7    131649344    rs11765205    G    A    208.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.15;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:241,18,0
7    131814421    rs13246116    C    T    632.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.76;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:666,51,0
7    131814529    rs13246412    G    A    584.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=30.75;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:617,51,0
7    131815118    rs10954359    C    T    287.74    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=4.616;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=26.16;ReadPosRankSum=0.825;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:2,9:11:35.85:318,0,36
7    131815220    rs10954360    G    A    510.08    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=45;Dels=0.0;FS=8.7;HRun=0;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=0.416;QD=11.34;ReadPosRankSum=-0.416;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:21,24:45:99:540,0,632
7    131815310    rs2671103    A    G    1868.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_AMINO_ACID_CHANGE=D1871;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_131808091_131815333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1902,141,0
7    131815343    rs10954361    G    A    1437.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1470,108,0
7    131817726    rs6467422    T    G    368.42    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=27;Dels=0.0;FS=2.251;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.14;QD=13.65;ReadPosRankSum=-1.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:14,13:27:99:398,0,457
7    131817735    rs6467423    C    T    345.60    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.235;DB;DP=29;Dels=0.0;FS=1.974;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.847;QD=11.92;ReadPosRankSum=1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:17,12:29:99:376,0,529
7    131830080    rs2671100    G    A    283.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=17.69;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:6,10:16:99:313,0,159
7    131830086    rs2598198    C    T    286.55    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.44;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.007;QD=17.91;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:6,10:16:99:317,0,148
7    131831552    rs2671112    C    T    192.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.78;MQ0=0;MQRankSum=0.241;QD=10.13;ReadPosRankSum=-1.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:9,9:19:99:223,0,244
7    131832545    rs1450881    T    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:75,0,27
7    131832627    rs1450882    A    G    388.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=55.52;MQ0=0;QD=24.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:422,36,0
7    131833425    rs10256987    G    A    464.53    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.425;QD=18.58;ReadPosRankSum=-1.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:9,16:25:99:495,0,269
7    131833427    rs2671108    T    C    421.48    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.18;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.323;QD=16.21;ReadPosRankSum=-1.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:9,17:26:99:451,0,278
7    131833465    rs2598199    A    T    272.98    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=16.06;ReadPosRankSum=1.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:8,9:17:99:303,0,276
7    131849670    rs896169    C    A    81.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
7    131852984    rs7777156    C    T    179.25    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.825;QD=16.3;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:5,6:11:99:209,0,169
7    131852989    rs59200081    G    C    166.28    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=58.29;MQ0=0;MQRankSum=-0.387;QD=15.12;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,122
7    131853432    rs79790908    C    A    33.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.68;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:3,2:5:63.39:63,0,104
7    131859496    rs7808586    G    A    878.23    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=5.334;DB;DP=67;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=1.7306;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=13.11;ReadPosRankSum=-0.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:38,29:67:99:908,0,1079
7    131859817    rs35136321    A    G    139.35    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.48;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,137
7    131864591    rs3734989    T    C    252.20    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=13;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.606;QD=19.4;ReadPosRankSum=-1.437;SNPEFF_AMINO_ACID_CHANGE=A1243;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_131864446_131864680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:3,10:13:81.32:282,0,81
7    131866972    rs3734983    A    G    282.47    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.665;DB;DP=22;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.391;QD=12.84;ReadPosRankSum=0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:13,9:22:99:312,0,429
7    131908468    rs2290232    T    C    274.57    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=16;Dels=0.0;FS=7.57;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.588;QD=17.16;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:7,9:16:99:305,0,201
7    131912083    rs11761061    T    A    116.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=16.64;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321063    GT:AD:DP:GQ:PL    0/1:3,4:7:99:146,0,103
7    132409606    rs594208    T    C    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.81;ReadPosRankSum=-1.026;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_132409536_132409791;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009365.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332558    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:69,0,70
7    132409740    .    C    G    418.28    PASS    AB=0.15;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DP=20;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.156;QD=20.91;ReadPosRankSum=0.578;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_132409536_132409791;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009365.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332558    GT:AD:DP:GQ:PL    0/1:3,17:20:0.19:447,0,0
7    132570358    rs12707059    T    C    220.01    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=2.646;QD=12.94;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262570    GT:AD:DP:GQ:PL    0/1:9,8:17:99:250,0,304
7    132709293    rs13235276    C    T    2044.27    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.624;DB;DP=148;Dels=0.0;FS=3.16;HRun=0;HaplotypeScore=3.7304;MQ=59.84;MQ0=0;MQRankSum=0.629;QD=13.81;ReadPosRankSum=0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262570    GT:AD:DP:GQ:PL    0/1:77,70:148:99:2074,0,2260
7    132854256    rs34807304    C    CT    545.09    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.14;DB;DP=47;FS=5.403;HRun=2;HaplotypeScore=148.0472;IndelType=I;MQ=51.5;MQ0=0;MQRankSum=-3.696;QD=10.9;ReadPosRankSum=-0.181;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC083873.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421179    GT:AD:DP:GQ:PL    0/1:32,18:47:99:584,0,1087
7    132854875    rs10259794    C    T    1645.91    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=4.238;DB;DP=107;Dels=0.0;FS=1.648;HRun=0;HaplotypeScore=0.0;MQ=52.9;MQ0=2;MQRankSum=-4.12;QD=15.38;ReadPosRankSum=-0.776;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC083873.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421179    GT:AD:DP:GQ:PL    0/1:47,60:107:99:1676,0,1265
7    132938039    rs10641096    C    CCCTT    344.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=42.1408;IndelType=I;MQ=44.86;MQ0=0;MQRankSum=-1.159;QD=34.43;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253861    GT:AD:DP:GQ:PL    0/1:5,5:10:99:383,0,177
7    132974012    rs2178688    G    C    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253861    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:71,0,33
7    132990536    rs74776446    C    CT    577.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=3;HaplotypeScore=33.8934;IndelType=I;MQ=61.34;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253861    GT:AD:DP:GQ:PL    1/1:1,15:16:45.15:620,45,0
7    133314615    rs10262044    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253861    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    133602538    rs73156934    C    T    569.74    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.181;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=18.38;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460346    GT:AD:DP:GQ:PL    0/1:13,18:31:99:600,0,404
7    133749164    rs6953296    G    A    498.09    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.155;QD=14.65;ReadPosRankSum=-0.293;SNPEFF_AMINO_ACID_CHANGE=Q224;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_133749044_133749471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541309    GT:AD:DP:GQ:PL    0/1:18,16:34:99:528,0,614
7    133828159    rs1222403    T    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRGUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473068    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    133868368    rs1222420    C    T    1197.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRGUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285928    GT:AD:DP:GQ:PL    1/1:0,30:30:90.30:1231,90,0
7    133868507    rs1222419    C    T    2810.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.56;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=A412;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_133868486_133868605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRGUK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285928    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2843,217,0
7    133881919    rs72444341    ATG    A    426.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=71.0632;IndelType=D;MQ=61.78;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRGUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285928    GT:AD:DP:GQ:PL    1/1:6,12:18:39.11:468,39,0
7    133979368    rs2241335    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470969    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:74,0,34
7    133979545    rs2504    A    T    276.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.325;QD=15.35;ReadPosRankSum=-0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470969    GT:AD:DP:GQ:PL    0/1:9,9:18:99:306,0,285
7    133979552    rs2505    C    T    375.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.178;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=17.89;ReadPosRankSum=-0.959;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470969    GT:AD:DP:GQ:PL    0/1:9,12:21:99:406,0,293
7    133979578    rs2241336    A    G    407.69    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.16;DB;DP=28;Dels=0.0;FS=1.82;HRun=1;HaplotypeScore=1.5782;MQ=60.0;MQ0=0;MQRankSum=0.321;QD=14.56;ReadPosRankSum=0.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470969    GT:AD:DP:GQ:PL    0/1:11,16:28:99:438,0,343
7    133979795    rs1421484    T    C    811.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.015;DB;DP=108;Dels=0.0;FS=2.805;HRun=1;HaplotypeScore=2.9875;MQ=60.0;MQ0=0;MQRankSum=0.81;QD=7.52;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=T262;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_133974084_133979831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378509    GT:AD:DP:GQ:PL    0/1:72,36:108:99:842,0,2233
7    133981227    rs1862052    G    A    175.04    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=-0.466;QD=15.91;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470969    GT:AD:DP:GQ:PL    0/1:5,6:11:99:205,0,173
7    133984432    rs2075372    C    T    209.88    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.244;QD=11.66;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378509    GT:AD:DP:GQ:PL    0/1:11,7:18:99:240,0,319
7    133984878    rs34664116    G    A    207.70    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.536;DB;DP=18;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.543;QD=11.54;ReadPosRankSum=-1.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378509    GT:AD:DP:GQ:PL    0/1:11,7:18:99:238,0,279
7    133987039    rs2244690    A    G    82.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378509    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:113,0,31
7    133989543    rs447266    A    G    249.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.066;DB;DP=22;Dels=0.0;FS=4.419;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.525;QD=11.34;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378509    GT:AD:DP:GQ:PL    0/1:11,11:22:99:280,0,357
7    134131955    rs2259458    T    G    344.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426422    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:377,30,0
7    134133291    rs2734653    G    A    161.59    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.811;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.71;MQ0=0;MQRankSum=-0.091;QD=8.98;ReadPosRankSum=-1.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426422    GT:AD:DP:GQ:PL    0/1:11,7:18:99:192,0,364
7    134133620    rs17660462    T    G    252.67    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.93;QD=19.44;ReadPosRankSum=-1.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426422    GT:AD:DP:GQ:PL    0/1:3,10:13:88.94:283,0,89
7    134134115    rs2551474    G    A    70.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=23.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426422    GT:AD:DP:GQ:PL    1/1:0,3:3:9:102,9,0
7    134134338    rs71531826    CA    C    414.10    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=0.112;DB;DP=54;FS=0.0;HRun=13;HaplotypeScore=268.3265;IndelType=D;MQ=57.15;MQ0=0;MQRankSum=0.647;QD=7.67;ReadPosRankSum=1.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426422    GT:AD:DP:GQ:PL    0/1:23,31:54:99:453,0,416
7    134135751    rs2734649    C    T    274.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462784    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
7    134136219    rs1708432    G    T    252.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285930    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:286,24,0
7    134136584    rs1732035    A    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285930    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
7    134143690    rs1424426    T    C    111.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.8941;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=18.64;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285930    GT:AD:DP:GQ:PL    0/1:2,4:6:51.57:142,0,52
7    134212611    rs2037004    G    A    311.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.338;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9994;MQ=60.0;MQ0=0;MQRankSum=-1.241;QD=12.99;ReadPosRankSum=-0.144;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475559    GT:AD:DP:GQ:PL    0/1:12,12:24:99:342,0,391
7    134212741    rs2037005    A    G    375.95    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=1.564;QD=15.04;ReadPosRankSum=-1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359579    GT:AD:DP:GQ:PL    0/1:12,13:25:99:406,0,379
7    134215259    rs1722886    A    T    97.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.17;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359579    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,140
7    134215403    rs1722883    T    C    1172.96    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.357;DB;DP=75;Dels=0.0;FS=0.97;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=15.64;ReadPosRankSum=0.239;SNPEFF_AMINO_ACID_CHANGE=L25;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134215395_134215562;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359579    GT:AD:DP:GQ:PL    0/1:34,41:75:99:1203,0,1096
7    134216444    rs1646764    C    G    96.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.0;QD=10.72;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359579    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,177
7    134217729    rs3735041    A    G    695.81    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.527;DB;DP=60;Dels=0.0;FS=1.601;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.926;QD=11.6;ReadPosRankSum=-0.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359579    GT:AD:DP:GQ:PL    0/1:32,28:60:99:726,0,1103
7    134221694    rs706159    G    A    738.38    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.586;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.95;MQ0=0;MQRankSum=-3.388;QD=14.2;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359579    GT:AD:DP:GQ:PL    0/1:27,25:52:99:768,0,912
7    134221826    rs28545160    A    G    217.62    MQFilter40    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=3.026;DB;DP=72;Dels=0.0;FS=36.085;HRun=0;HaplotypeScore=1.4105;MQ=39.8;MQ0=5;MQRankSum=-1.714;QD=3.02;ReadPosRankSum=-0.287;SNPEFF_AMINO_ACID_CHANGE=T192;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134221803_134221909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359579    GT:AD:DP:GQ:PL    0/1:52,19:72:99:248,0,1382
7    134223127    rs4732035    T    C    249.72    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.031;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.54;MQ0=0;MQRankSum=0.26;QD=9.99;ReadPosRankSum=0.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475559    GT:AD:DP:GQ:PL    0/1:13,12:25:99:280,0,397
7    134225788    rs4732036    C    T    964.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475559    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:998,78,0
7    134225827    rs4728329    A    G    1261.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_AMINO_ACID_CHANGE=N313D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134225799_134226160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359579    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1294,99,0
7    134250322    rs4732038    A    C    158.42    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.813;DB;DP=16;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.813;QD=9.9;ReadPosRankSum=-1.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:10,6:16:99:188,0,281
7    134253269    rs56097712    C    T    100.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=1.38;QD=16.83;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:2,4:6:14.58:131,0,15
7    134254029    rs3792574    G    A    341.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;MQRankSum=0.674;QD=22.76;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:5,10:15:99:371,0,132
7    134254427    rs782538    G    A    377.43    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.737;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.82;MQ0=0;MQRankSum=-0.046;QD=13.01;ReadPosRankSum=-0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:15,13:29:99:407,0,515
7    134259951    rs7788801    T    C    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467156    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:70,0,69
7    134259962    rs1465473    T    C    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467156    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
7    134261097    rs2161803    C    G    961.62    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.791;DB;DP=91;Dels=0.0;FS=2.965;HRun=0;HaplotypeScore=1.6647;MQ=58.86;MQ0=0;MQRankSum=-0.291;QD=10.57;ReadPosRankSum=-0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:47,44:91:99:992,0,1425
7    134261674    rs6979933    C    T    1340.78    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.15;DB;DP=95;Dels=0.0;FS=3.63;HRun=2;HaplotypeScore=1.664;MQ=56.87;MQ0=0;MQRankSum=-0.13;QD=14.11;ReadPosRankSum=0.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:48,47:95:99:1371,0,1506
7    134261996    rs6966945    A    C    83.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;MQRankSum=0.72;QD=13.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:2,4:6:63.02:114,0,63
7    134262441    rs10241998    T    C    253.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.077;DB;DP=24;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.323;QD=10.54;ReadPosRankSum=-1.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:12,12:24:99:283,0,356
7    134264233    rs72495463    C    CT    353.23    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=1.759;DB;DP=35;FS=0.0;HRun=11;HaplotypeScore=163.9092;IndelType=I;MQ=59.65;MQ0=0;MQRankSum=1.403;QD=10.09;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:18,16:35:99:392,0,249
7    134264286    rs6467538    C    T    478.50    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.447;DB;DP=46;Dels=0.0;FS=1.227;HRun=2;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.186;QD=10.4;ReadPosRankSum=-1.006;SNPEFF_AMINO_ACID_CHANGE=F312;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134264259_134264592;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1B15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423958    GT:AD:DP:GQ:PL    0/1:27,19:46:99:508,0,705
7    134552634    rs1452911    G    A    125.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361388    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
7    134576441    rs6953822    T    C    920.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.17;MQ0=0;QD=27.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361388    GT:AD:DP:GQ:PL    1/1:0,34:34:84.14:953,84,0
7    134576547    rs12531510    A    G    206.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.77;MQ0=0;QD=18.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361388    GT:AD:DP:GQ:PL    1/1:0,11:11:18.06:239,18,0
7    134612759    rs58197245    G    GT    2217.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=2;HaplotypeScore=125.0044;IndelType=I;MQ=60.34;MQ0=0;QD=40.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361388    GT:AD:DP:GQ:PL    1/1:1,54:55:99:2260,162,0
7    134618710    rs6973420    A    G    3528.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=H397R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134617739_134618828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361675    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3528,280,0
7    134678463    rs12540686    T    C    998.23    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.839;DB;DP=70;Dels=0.0;FS=1.088;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.535;QD=14.26;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359383    GT:AD:DP:GQ:PL    0/1:36,34:70:99:1028,0,1138
7    134678523    rs2252826    C    T    520.99    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.792;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.838;QD=14.47;ReadPosRankSum=-1.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359383    GT:AD:DP:GQ:PL    0/1:19,17:36:99:551,0,616
7    134701856    rs4236655    G    C    3424.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=E122Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134701803_134701910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435976    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3425,253,0
7    134719551    rs9656447    C    G    2089.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_AMINO_ACID_CHANGE=L377;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134718900_134719679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458078    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2123,156,0
7    134730151    rs2348054    G    C    814.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435976    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:847,63,0
7    134730441    rs2348055    A    G    1904.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.604;MQ=59.56;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435976    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1938,144,0
7    134813424    rs62479729    A    T    455.13    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.23;QD=16.86;ReadPosRankSum=-0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435976    GT:AD:DP:GQ:PL    0/1:10,17:27:99:485,0,301
7    134813853    rs2348282    G    A    1408.69    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.794;DB;DP=108;Dels=0.0;FS=3.988;HRun=1;HaplotypeScore=1.8937;MQ=59.61;MQ0=0;MQRankSum=0.087;QD=13.04;ReadPosRankSum=-0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435976    GT:AD:DP:GQ:PL    0/1:56,52:108:99:1439,0,1900
7    134849213    rs3800592    G    A    700.02    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=2.724;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.184;QD=18.92;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=R7Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134849170_134850650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM140;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275767    GT:AD:DP:GQ:PL    0/1:12,25:37:99:730,0,259
7    134849280    rs292501    T    A    2487.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_AMINO_ACID_CHANGE=F29L;SNPEFF_CODON_CHANGE=ttT/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134849170_134850650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM140;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275767    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2521,190,0
7    134849577    rs2288237    A    C    137.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.513;DB;DP=18;Dels=0.0;FS=4.752;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.049;QD=7.62;ReadPosRankSum=0.342;SNPEFF_AMINO_ACID_CHANGE=A128;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134849170_134850650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM140;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275767    GT:AD:DP:GQ:PL    0/1:10,8:18:99:167,0,350
7    134852399    rs2288238    G    A    278.32    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=17.4;ReadPosRankSum=1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486115    GT:AD:DP:GQ:PL    0/1:5,11:16:99:308,0,115
7    134852420    rs138841490    CA    C    436.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.096;DB;DP=21;FS=2.73;HRun=2;HaplotypeScore=168.0671;IndelType=D;MQ=59.94;MQ0=0;MQRankSum=-0.41;QD=20.79;ReadPosRankSum=-0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486115    GT:AD:DP:GQ:PL    0/1:7,14:21:99:476,0,252
7    134852432    rs292505    C    T    813.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.94;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486115    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:846,66,0
7    134853844    rs9649052    C    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275767    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:70,0,29
7    134871775    rs292557    C    T    3872.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=S641;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134871724_134871921;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423565    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3873,289,0
7    134872003    rs292558    C    G    229.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462707    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:262,21,0
7    134872063    rs292559    G    A    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462707    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
7    134873355    rs292564    G    A    681.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.76;MQ0=0;QD=29.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474411    GT:AD:DP:GQ:PL    1/1:0,23:23:60.14:714,60,0
7    134873964    rs292566    G    C    53.50    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=6.69;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474411    GT:AD:DP:GQ:PL    0/1:5,3:8:83.50:83,0,174
7    134877935    rs292573    A    G    1362.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474411    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1396,105,0
7    134879830    rs292575    G    A    686.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=D382;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134879686_134879836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423565    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:720,54,0
7    134880884    rs292578    G    C    1515.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.52;MQ0=0;QD=31.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476775    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1548,117,0
7    134882592    rs292581    C    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344400    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    134882680    rs292582    A    G    851.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344400    GT:AD:DP:GQ:PL    1/1:0,26:26:66.19:885,66,0
7    134882693    rs292583    T    C    1058.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344400    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1091,81,0
7    134888845    rs292591    C    G    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344400    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
7    134889141    rs292592    G    A    519.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.49;SNPEFF_AMINO_ACID_CHANGE=P222L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_134889020_134889185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423565    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:553,42,0
7    134890585    rs117058343    G    A    478.17    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.645;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;MQRankSum=-1.336;QD=17.08;ReadPosRankSum=-0.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344400    GT:AD:DP:GQ:PL    0/1:13,15:28:99:508,0,418
7    134890855    rs292593    T    G    2328.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344400    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2362,178,0
7    134895532    rs292601    T    C    2201.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344400    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2234,163,0
7    134896383    rs292602    T    C    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344400    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
7    134928315    rs292634    G    C    169.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275764    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
7    134930169    rs113633449    A    AGAG    618.43    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.462;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=82.6858;IndelType=I;MQ=60.35;MQ0=0;MQRankSum=-0.099;QD=22.9;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275764    GT:AD:DP:GQ:PL    0/1:15,12:27:99:657,0,372
7    135047703    rs6969632    T    C    4990.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6214;MQ=59.59;MQ0=0;QD=29.53;SNPEFF_AMINO_ACID_CHANGE=T618;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_135047637_135047938;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361528    GT:AD:DP:GQ:PL    1/1:0,169:169:99:4990,418,0
7    135048033    rs2059367    G    C    789.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262563    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:823,63,0
7    135048497    rs2840185    C    T    332.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262563    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:366,30,0
7    135082953    rs77841106    G    C    450.38    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.401;DB;DP=22;Dels=0.0;FS=1.59;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.735;QD=20.47;ReadPosRankSum=-0.334;SNPEFF_AMINO_ACID_CHANGE=L280V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_135082921_135082978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361528    GT:AD:DP:GQ:PL    0/1:9,13:22:99:480,0,304
7    135095270    rs2696877    A    G    1595.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;QD=31.92;SNPEFF_AMINO_ACID_CHANGE=Y272;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_135095265_135095398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262563    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1629,129,0
7    135098846    rs79650164    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262563    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    135099901    rs73158933    G    A    2418.88    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.678;DB;DP=179;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=59.77;MQ0=0;MQRankSum=1.307;QD=13.51;ReadPosRankSum=0.855;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262563    GT:AD:DP:GQ:PL    0/1:92,87:179:99:2449,0,2569
7    135129731    rs111856496    C    CT    454.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=31.2675;IndelType=I;MQ=44.03;MQ0=1;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262563    GT:AD:DP:GQ:PL    1/1:3,13:14:36.12:496,36,0
7    135262681    rs12707242    C    T    787.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.935;DB;DP=46;Dels=0.0;FS=6.86;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.359;QD=17.12;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=G262;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_135262544_135262772;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    0/1:18,27:46:99:818,0,530
7    135276485    rs4410839    G    A    224.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:258,21,0
7    135277626    rs11772654    C    G    73.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.31;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,108
7    135277647    rs76481679    T    C    225.91    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=22.59;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    0/1:3,7:10:85.81:256,0,86
7    135279315    rs7800214    A    C    1183.75    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.198;DB;DP=94;Dels=0.0;FS=2.82;HRun=1;HaplotypeScore=0.5784;MQ=59.71;MQ0=0;MQRankSum=0.116;QD=12.59;ReadPosRankSum=1.623;SNPEFF_AMINO_ACID_CHANGE=A617;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_135279295_135279477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    0/1:50,44:94:99:1214,0,1511
7    135285788    rs4296989    T    C    465.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440390    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:499,36,0
7    135286170    rs35467082    G    A    1332.46    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.075;DB;DP=96;Dels=0.0;FS=4.084;HRun=0;HaplotypeScore=1.933;MQ=59.52;MQ0=0;MQRankSum=-0.919;QD=13.88;ReadPosRankSum=0.216;SNPEFF_AMINO_ACID_CHANGE=L809;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_135286118_135286255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    0/1:49,47:96:99:1362,0,1488
7    135301521    rs35690290    TA    T    117    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=13;HaplotypeScore=39.597;IndelType=D;MQ=58.88;MQ0=0;QD=10.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463247    GT:AD:DP:GQ:PL    1/1:2,8:11:22.88:159,23,0
7    135304273    rs7810767    G    C    1527.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=E1356Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_135304171_135304438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1561,117,0
7    135304830    rs35766534    C    T    74.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463247    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:107,9,0
7    135311120    rs7810260    G    A    1230.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1264,93,0
7    135311167    rs10234309    G    A    538.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:571,45,0
7    135311361    rs36120453    G    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285968    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    135482585    rs4645510    A    G    231.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410287    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:264,21,0
7    135482731    rs4360240    C    G    472.68    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=46;Dels=0.0;FS=8.671;HRun=0;HaplotypeScore=0.6651;MQ=59.5;MQ0=0;MQRankSum=-1.274;QD=10.28;ReadPosRankSum=-0.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410287    GT:AD:DP:GQ:PL    0/1:26,20:46:99:503,0,834
7    135482739    rs5017704    G    A    595.47    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=49;Dels=0.0;FS=5.9;HRun=0;HaplotypeScore=0.6651;MQ=59.53;MQ0=0;MQRankSum=-0.611;QD=12.15;ReadPosRankSum=-1.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410287    GT:AD:DP:GQ:PL    0/1:26,23:49:99:625,0,817
7    135482871    rs62491563    A    T    1159.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.454;DB;DP=84;Dels=0.0;FS=0.861;HRun=4;HaplotypeScore=0.9159;MQ=59.73;MQ0=0;MQRankSum=-0.246;QD=13.81;ReadPosRankSum=2.205;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410287    GT:AD:DP:GQ:PL    0/1:42,42:84:99:1190,0,1411
7    135482945    rs4602829    T    C    2645.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=33.49;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410287    GT:AD:DP:GQ:PL    1/1:0,78:79:99:2679,208,0
7    135483051    rs10233321    T    G    322.90    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.992;QD=17.94;ReadPosRankSum=0.272;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410287    GT:AD:DP:GQ:PL    0/1:7,11:18:99:353,0,235
7    135929352    rs17244557    T    G    861.48    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=64;Dels=0.0;FS=9.031;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.586;QD=13.25;ReadPosRankSum=-0.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC009784.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408055    GT:AD:DP:GQ:PL    0/1:35,29:64:99:891,0,986
7    135929406    rs11771632    T    C    510.51    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=33;Dels=0.0;FS=6.12;HRun=1;HaplotypeScore=2.594;MQ=60.0;MQ0=0;MQRankSum=-1.767;QD=15.47;ReadPosRankSum=-0.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC009784.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408055    GT:AD:DP:GQ:PL    0/1:14,19:33:99:540,0,479
7    136556285    rs71541328    A    C    76.14    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=1.489;DB;DP=23;Dels=0.0;FS=4.434;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.254;QD=3.31;ReadPosRankSum=0.862;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471195    GT:AD:DP:GQ:PL    0/1:17,6:23:99:106,0,497
7    136556331    rs12537753    C    G    45.36    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.65;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.65;QD=2.83;ReadPosRankSum=-0.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471195    GT:AD:DP:GQ:PL    0/1:12,4:16:75.35:75,0,450
7    136587843    rs10488598    T    C    365.55    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.509;DB;DP=29;Dels=0.0;FS=6.085;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.085;QD=12.61;ReadPosRankSum=-1.483;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320658    GT:AD:DP:GQ:PL    0/1:17,12:29:99:396,0,509
7    136588109    rs6963819    G    A    1113.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320658    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1146,87,0
7    136920764    rs185842206    A    C    230.70    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=17.75;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348225    GT:AD:DP:GQ:PL    0/1:5,8:13:99:261,0,166
7    136921062    rs322295    C    T    479.66    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.364;QD=10.43;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348225    GT:AD:DP:GQ:PL    0/1:29,17:46:99:510,0,968
7    136939582    rs1162122    G    T    3972.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348225    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3972,298,0
7    137082039    rs2241443    T    C    173.82    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.63;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=9.66;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288490    GT:AD:DP:GQ:PL    0/1:11,7:18:99:204,0,364
7    137092745    rs34071427    CA    C    962.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=3;HaplotypeScore=147.1878;IndelType=D;MQ=56.29;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288490    GT:AD:DP:GQ:PL    1/1:1,29:28:81.25:1004,81,0
7    137092781    rs7800454    T    C    836.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288490    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:870,66,0
7    137097086    rs1731959    G    C    179.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288490    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:212,18,0
7    137128830    rs1918837    T    C    662.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=28.81;SNPEFF_AMINO_ACID_CHANGE=E595;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_137128823_137128848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453654    GT:AD:DP:GQ:PL    1/1:0,23:23:54.15:696,54,0
7    137304765    rs148788099    G    GCA    201.04    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=95.5433;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=-0.717;QD=11.17;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288490    GT:AD:DP:GQ:PL    0/1:9,5:18:57.02:240,0,57
7    137531147    rs71815938    GT    G    369.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=34.3316;IndelType=D;MQ=58.77;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288490    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:412,30,0
7    137590369    rs273968    G    A    312.89    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.787;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.681;QD=10.09;ReadPosRankSum=0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330387    GT:AD:DP:GQ:PL    0/1:20,11:31:99:343,0,582
7    137600690    rs273957    C    T    341.14    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=0.925;DB;DP=37;Dels=0.0;FS=9.245;HRun=1;HaplotypeScore=0.9983;MQ=59.38;MQ0=0;MQRankSum=-1.574;QD=9.22;ReadPosRankSum=1.801;SNPEFF_AMINO_ACID_CHANGE=V123I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_137600583_137600758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420629    GT:AD:DP:GQ:PL    0/1:25,12:37:99:371,0,797
7    137607233    rs28505336    C    T    105.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.638;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.471;QD=4.23;ReadPosRankSum=-1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330387    GT:AD:DP:GQ:PL    0/1:15,10:25:99:136,0,510
7    137607510    rs184046853    A    G    104.88    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=9.53;ReadPosRankSum=1.246;SNPEFF_AMINO_ACID_CHANGE=C42R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_137607336_137607513;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420629    GT:AD:DP:GQ:PL    0/1:7,4:11:99:135,0,256
7    137612913    rs66593747    CTGG    C    350.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=42.8834;IndelType=D;MQ=50.65;MQ0=0;QD=43.77;SNPEFF_AMINO_ACID_CHANGE=TS100S;SNPEFF_CODON_CHANGE=accagt/agt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_7_137612896_137613112;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330387    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:392,24,0
7    137773291    rs2120846    T    G    393.67    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=26;Dels=0.0;FS=1.974;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.18;QD=15.14;ReadPosRankSum=-0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242375    GT:AD:DP:GQ:PL    0/1:12,14:26:99:424,0,389
7    137773563    rs2166188    T    G    73.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242375    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:103,0,30
7    137776411    rs72137409    C    CA    122.84    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=22;FS=3.522;HRun=12;HaplotypeScore=109.4461;IndelType=I;MQ=57.3;MQ0=0;MQRankSum=0.222;QD=5.58;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242375    GT:AD:DP:GQ:PL    0/1:15,6:22:99:162,0,165
7    137782593    rs35402657    CTT    C    501.06    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.203;DB;DP=57;FS=0.0;HRun=15;HaplotypeScore=293.0905;IndelType=D;MQ=57.92;MQ0=0;MQRankSum=-0.631;QD=8.79;ReadPosRankSum=0.476;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242375    GT:AD:DP:GQ:PL    0/1:10,22:57:99:540,0,117
7    137792420    rs3816829    A    G    204.57    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=12.79;ReadPosRankSum=1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242375    GT:AD:DP:GQ:PL    0/1:9,7:16:99:235,0,277
7    137798593    rs2306847    A    T    221.86    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.896;QD=17.07;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242375    GT:AD:DP:GQ:PL    0/1:5,8:13:99:252,0,134
7    137801413    rs1872929    A    C    663.68    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.226;DB;DP=69;Dels=0.0;FS=3.564;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.235;QD=9.62;ReadPosRankSum=-0.428;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468877    GT:AD:DP:GQ:PL    0/1:38,31:69:99:694,0,1277
7    137801444    rs1872930    C    T    788.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.822;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8154;MQ=60.0;MQ0=0;MQRankSum=-0.21;QD=15.16;ReadPosRankSum=-0.046;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468877    GT:AD:DP:GQ:PL    0/1:26,26:52:99:818,0,702
7    138188932    rs10488642    A    G    260.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.74;QD=21.75;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRIM24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343526    GT:AD:DP:GQ:PL    0/1:3,9:12:86.98:291,0,87
7    138200117    rs3757381    A    T    866.87    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=1.17;DB;DP=53;Dels=0.0;FS=4.108;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.512;QD=16.36;ReadPosRankSum=-1.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRIM24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485318    GT:AD:DP:GQ:PL    0/1:23,30:53:99:897,0,562
7    138200210    rs68115887    T    C    406.44    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=23.91;ReadPosRankSum=-0.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRIM24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485318    GT:AD:DP:GQ:PL    0/1:5,12:17:99:436,0,111
7    138229990    rs6959574    G    A    44.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRIM24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343526    GT:AD:DP:GQ:PL    0/1:1,2:3:20.60:74,0,21
7    138258578    rs6953153    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRIM24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476785    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    138268563    rs3213902    A    G    462.65    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.11;MQ0=0;MQRankSum=0.184;QD=17.79;ReadPosRankSum=-0.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRIM24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343526    GT:AD:DP:GQ:PL    0/1:10,16:26:99:493,0,341
7    138270657    rs1673203    G    A    1404.12    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.904;DB;DP=104;Dels=0.0;FS=6.17;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.098;QD=13.5;ReadPosRankSum=1.738;SNPEFF_AMINO_ACID_CHANGE=S538;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138270552_138270693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRIM24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378381    GT:AD:DP:GQ:PL    0/1:57,47:104:99:1434,0,1571
7    138270838    rs1673204    T    C    630.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRIM24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378381    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:663,54,0
7    138279228    rs1439793    A    T    284.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419765    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:317,30,0
7    138281355    rs1659832    A    G    335.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288513    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:368,30,0
7    138310629    rs1673162    G    A    510.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288513    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:543,42,0
7    138312122    rs2305816    A    C    874.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_AMINO_ACID_CHANGE=F233C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138312095_138312206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288513    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:907,66,0
7    138329354    rs1673174    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288513    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    138333933    rs79331060    GA    G    517.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.04;DB;DP=29;FS=9.208;HRun=11;HaplotypeScore=92.2917;IndelType=D;MQ=59.58;MQ0=0;MQRankSum=0.624;QD=17.84;ReadPosRankSum=0.763;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288513    GT:AD:DP:GQ:PL    1/1:5,24:29:42.92:559,43,0
7    138356584    rs4421309    C    G    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419765    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
7    138356589    rs4584075    G    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419765    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    138356730    rs5887895    T    TG    528.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=126.8482;IndelType=I;MQ=48.1;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419765    GT:AD:DP:GQ:PL    1/1:8,6:14:39.13:571,39,0
7    138356733    rs5887896    TG    T    495.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=103.1471;IndelType=D;MQ=49.26;MQ0=0;QD=38.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419765    GT:AD:DP:GQ:PL    1/1:6,7:13:39.13:537,39,0
7    138363767    rs10250576    A    G    724.57    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.348;DB;DP=78;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9164;MQ=58.81;MQ0=0;MQRankSum=0.718;QD=9.29;ReadPosRankSum=0.9;SNPEFF_AMINO_ACID_CHANGE=P8;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138363709_138363790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419765    GT:AD:DP:GQ:PL    0/1:45,33:78:99:755,0,1500
7    138363896    rs12535253    A    G    236.86    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.064;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.833;QD=11.28;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVOPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421622    GT:AD:DP:GQ:PL    0/1:13,8:21:99:267,0,425
7    138400796    rs999229    C    T    166.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
7    138413753    rs3734941    G    A    126.51    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=14.06;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    0/1:2,7:9:62.82:156,0,63
7    138417596    rs148944306    TA    T    57.01    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=13;FS=0.0;HRun=13;HaplotypeScore=62.0321;IndelType=D;MQ=54.44;MQ0=0;MQRankSum=2.588;QD=4.39;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471085    GT:AD:DP:GQ:PL    0/1:3,6:13:80.15:96,0,80
7    138417718    rs3807154    A    G    427.84    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.055;DB;DP=30;Dels=0.0;FS=3.399;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.021;QD=14.26;ReadPosRankSum=-0.561;SNPEFF_AMINO_ACID_CHANGE=H604;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138417622_138417838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    0/1:14,16:30:99:458,0,417
7    138417791    rs3807153    A    G    419.99    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.991;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6229;MQ=58.09;MQ0=0;MQRankSum=1.708;QD=8.57;ReadPosRankSum=-1.413;SNPEFF_AMINO_ACID_CHANGE=M580T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138417622_138417838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    0/1:29,20:49:99:450,0,968
7    138418910    rs1026435    G    A    195.29    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=30;Dels=0.0;FS=8.501;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=6.51;ReadPosRankSum=0.756;SNPEFF_AMINO_ACID_CHANGE=F554;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138418881_138418999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    0/1:22,8:30:99:225,0,560
7    138419085    rs1037692    A    G    293.56    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.572;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.184;QD=15.45;ReadPosRankSum=2.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    0/1:9,10:19:99:324,0,315
7    138441124    rs296910    A    G    2519.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483139    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2552,211,0
7    138446998    rs3823499    A    G    516.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:550,42,0
7    138453388    rs7780807    G    A    75.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
7    138453439    rs62486966    A    T    303.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:337,27,0
7    138453892    rs71956154    GA    G    253.44    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=68;FS=2.815;HRun=16;HaplotypeScore=302.8002;IndelType=D;MQ=53.15;MQ0=0;MQRankSum=2.402;QD=3.73;ReadPosRankSum=2.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    0/1:37,27:68:99:292,0,440
7    138455709    rs35403428    CA    C    1585.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=1;HaplotypeScore=113.9287;IndelType=D;MQ=60.54;MQ0=0;QD=39.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1628,117,0
7    138455988    rs10258719    A    G    5121.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.09;MQ0=0;QD=34.6;SNPEFF_AMINO_ACID_CHANGE=V2A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138455876_138456009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310018    GT:AD:DP:GQ:PL    1/1:0,148:148:99:5121,385,0
7    138485954    rs6945259    G    T    36.83    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=2.83;ReadPosRankSum=-1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397602    GT:AD:DP:GQ:PL    0/1:10,3:13:66.82:67,0,318
7    138486096    rs61729750    G    C    1424.37    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.494;DB;DP=95;Dels=0.0;FS=18.926;HRun=1;HaplotypeScore=1.9891;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=14.99;ReadPosRankSum=1.668;SNPEFF_AMINO_ACID_CHANGE=S35T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138486075_138486143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM213;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397602    GT:AD:DP:GQ:PL    0/1:47,48:95:99:1454,0,1508
7    138583840    rs7802841    C    A    2540.49    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=3.529;DB;DP=204;Dels=0.0;FS=28.196;HRun=0;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;MQRankSum=-0.637;QD=12.45;ReadPosRankSum=0.08;SNPEFF_AMINO_ACID_CHANGE=P1186;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138583701_138583878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:116,88:204:99:2570,0,3653
7    138584102    rs34378443    C    T    106.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=15.16;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:3,4:7:82.26:136,0,82
7    138595835    rs11379929    T    TA    589.77    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.727;DB;DP=50;FS=0.0;HRun=10;HaplotypeScore=167.0004;IndelType=I;MQ=59.14;MQ0=0;MQRankSum=-0.011;QD=11.8;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:27,23:50:99:629,0,403
7    138596064    rs6969074    G    A    1162.43    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=62;Dels=0.0;FS=4.303;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.47;QD=18.75;ReadPosRankSum=-1.25;SNPEFF_AMINO_ACID_CHANGE=Y941;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138595892_138596069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:24,38:62:99:1192,0,753
7    138597036    rs3735013    A    G    275.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.662;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.656;QD=9.19;ReadPosRankSum=1.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:18,12:30:99:306,0,639
7    138601365    rs2150282    C    T    150.09    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=18.76;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:3,5:8:62.92:180,0,63
7    138601572    rs2150283    C    T    388.24    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=3.574;DB;DP=41;Dels=0.0;FS=4.151;HRun=1;HaplotypeScore=0.5784;MQ=57.71;MQ0=0;MQRankSum=-2.258;QD=9.47;ReadPosRankSum=0.066;SNPEFF_AMINO_ACID_CHANGE=D884N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138601494_138604221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:24,17:41:99:418,0,402
7    138601706    rs2354336    C    A    374.33    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.383;DB;DP=27;Dels=0.0;FS=1.527;HRun=1;HaplotypeScore=0.5784;MQ=57.39;MQ0=0;MQRankSum=0.121;QD=13.86;ReadPosRankSum=-0.267;SNPEFF_AMINO_ACID_CHANGE=G839V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138601494_138604221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:14,13:27:99:404,0,456
7    138602056    rs61746877    G    A    1266.66    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=1.579;DB;DP=87;Dels=0.0;FS=1.751;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=1.908;QD=14.56;ReadPosRankSum=-0.486;SNPEFF_AMINO_ACID_CHANGE=P722;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138601494_138604221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1297,0,1175
7    138602071    rs61746879    A    G    1363.64    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.438;DB;DP=87;Dels=0.0;FS=4.187;HRun=1;HaplotypeScore=0.9997;MQ=59.79;MQ0=0;MQRankSum=-0.104;QD=15.67;ReadPosRankSum=0.173;SNPEFF_AMINO_ACID_CHANGE=T717;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138601494_138604221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:42,45:87:99:1394,0,1291
7    138602432    rs61734132    G    C    698.23    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.205;DB;DP=43;Dels=0.0;FS=4.327;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.311;QD=16.24;ReadPosRankSum=-0.484;SNPEFF_AMINO_ACID_CHANGE=S597C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138601494_138604221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:17,26:43:99:728,0,531
7    138602523    rs2774962    T    C    365.79    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7866;MQ=59.3;MQ0=0;MQRankSum=-0.931;QD=11.08;ReadPosRankSum=-2.108;SNPEFF_AMINO_ACID_CHANGE=R567G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138601494_138604221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:18,14:33:99:396,0,616
7    138603282    rs59985563    T    C    1290.25    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=95;Dels=0.0;FS=8.912;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.813;QD=13.58;ReadPosRankSum=0.843;SNPEFF_AMINO_ACID_CHANGE=T314A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138601494_138604221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1549;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242365    GT:AD:DP:GQ:PL    0/1:53,42:95:99:1320,0,1656
7    138713476    rs17856272    C    T    816.50    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.865;DB;DP=58;Dels=0.0;FS=5.43;HRun=2;HaplotypeScore=0.9665;MQ=59.6;MQ0=0;MQRankSum=-0.279;QD=14.08;ReadPosRankSum=-0.752;SNPEFF_AMINO_ACID_CHANGE=M244I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138713448_138713706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275766    GT:AD:DP:GQ:PL    0/1:26,32:58:99:846,0,764
7    138713715    rs11767739    G    C    334.94    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=17;Dels=0.0;FS=2.271;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.317;QD=19.7;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275766    GT:AD:DP:GQ:PL    0/1:7,10:17:99:365,0,167
7    138719194    rs10713373    AG    A    335.48    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=78.033;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=0.815;QD=18.64;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275766    GT:AD:DP:GQ:PL    0/1:7,11:18:99:375,0,261
7    138719231    rs7810237    T    C    453.46    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.32;MQ0=0;MQRankSum=1.422;QD=13.34;ReadPosRankSum=0.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275766    GT:AD:DP:GQ:PL    0/1:19,15:34:99:483,0,576
7    138732274    rs3087999    C    G    458.48    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.32;DB;DP=37;Dels=0.0;FS=4.167;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.722;QD=12.39;ReadPosRankSum=0.137;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242351    GT:AD:DP:GQ:PL    0/1:17,20:37:99:488,0,570
7    138732457    rs3735008    G    A    1053.24    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.329;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.006;QD=14.83;ReadPosRankSum=-0.995;SNPEFF_AMINO_ACID_CHANGE=F864;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138728266_138732599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242351    GT:AD:DP:GQ:PL    0/1:35,36:71:99:1083,0,964
7    138732497    rs3735007    G    A    785.92    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=0.871;DB;DP=58;Dels=0.0;FS=1.029;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.11;QD=13.55;ReadPosRankSum=0.431;SNPEFF_AMINO_ACID_CHANGE=T851I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138728266_138732599;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242351    GT:AD:DP:GQ:PL    0/1:31,27:58:99:816,0,825
7    138739816    rs10261597    C    G    1013.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.657;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.179;QD=34.95;ReadPosRankSum=0.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242351    GT:AD:DP:GQ:PL    1/1:1,28:29:45.04:1047,45,0
7    138740037    rs2297236    G    C    2509.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=36.38;SNPEFF_AMINO_ACID_CHANGE=Q701E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138739951_138740041;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242351    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2543,190,0
7    138740186    rs2297237    A    G    95.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471652    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:128,12,0
7    138740195    rs2297238    T    G    110.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=27.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471652    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
7    138758583    rs66770423    A    G    470.59    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.17;DB;DP=52;Dels=0.0;FS=1.202;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.783;QD=9.05;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242351    GT:AD:DP:GQ:PL    0/1:31,21:52:99:501,0,1028
7    138758992    rs12672266    A    G    84.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242351    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
7    138761034    rs2297241    G    C    1480.47    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=116;Dels=0.0;FS=7.333;HRun=0;HaplotypeScore=1.8997;MQ=59.48;MQ0=0;MQRankSum=-0.036;QD=12.76;ReadPosRankSum=-1.594;SNPEFF_AMINO_ACID_CHANGE=H325Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138761032_138761155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540247    GT:AD:DP:GQ:PL    0/1:60,56:116:99:1510,0,1918
7    138764060    rs2236424    G    A    442.17    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.819;DB;DP=33;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.486;QD=13.4;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=R543C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138763850_138764989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000464606    GT:AD:DP:GQ:PL    0/1:17,16:33:99:472,0,477
7    138764145    rs2236425    T    C    843.53    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.338;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.471;QD=19.62;ReadPosRankSum=0.777;SNPEFF_AMINO_ACID_CHANGE=V514;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138763850_138764989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000464606    GT:AD:DP:GQ:PL    0/1:15,28:43:99:874,0,438
7    138764233    rs2236426    C    T    788.77    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=51;Dels=0.0;FS=1.064;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.013;QD=15.47;ReadPosRankSum=-1.335;SNPEFF_AMINO_ACID_CHANGE=R245K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_138764216_138764989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540247    GT:AD:DP:GQ:PL    0/1:23,28:51:99:819,0,808
7    138793677    rs1839606    G    C    38.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=4.771;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.736;QD=9.72;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3HAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242351    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:69,0,33
7    138950990    .    AAG    A    241.27    PASS    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DP=42;FS=0.0;HRun=0;HaplotypeScore=430.5221;IndelType=D;MQ=44.39;MQ0=0;MQRankSum=-0.456;QD=5.74;ReadPosRankSum=1.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486663    GT:AD:DP:GQ:PL    0/1:36,6:42:99:280,0,262
7    138950991    .    AG    A    281.99    PASS    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=3.7;DP=42;FS=0.0;HRun=1;HaplotypeScore=417.3698;IndelType=D;MQ=44.39;MQ0=0;MQRankSum=-2.254;QD=6.71;ReadPosRankSum=0.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486663    GT:AD:DP:GQ:PL    0/1:35,7:42:99:321,0,182
7    139026152    rs10265    T    G    336.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.868;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9998;MQ=60.0;MQ0=0;MQRankSum=-1.674;QD=12.0;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=S8A;SNPEFF_CODON_CHANGE=Tcg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_139025878_139026268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C7orf55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297534    GT:AD:DP:GQ:PL    0/1:14,14:28:99:366,0,406
7    139097282    rs11409457    A    AC    1205.33    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.64;DB;DP=76;FS=0.0;HRun=0;HaplotypeScore=288.8952;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=1.065;QD=15.86;ReadPosRankSum=0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263545    GT:AD:DP:GQ:PL    0/1:42,32:76:99:1244,0,1285
7    139102490    rs3778931    A    G    335.63    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.32;DB;DP=22;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.533;QD=15.26;ReadPosRankSum=-1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463912    GT:AD:DP:GQ:PL    0/1:10,12:22:99:366,0,282
7    139167934    rs1860150    T    G    71.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=14.31;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=K152T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_139167632_139168458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340940    GT:AD:DP:GQ:PL    0/1:2,3:5:29.72:102,0,30
7    139653196    rs5768    A    C    2905.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=59.74;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=E160D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_139653167_139653255;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBXAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336425    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2938,220,0
7    139657328    rs3735355    C    A    261.47    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.83;QD=13.76;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBXAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476637    GT:AD:DP:GQ:PL    0/1:8,11:19:99:291,0,154
7    139707140    rs740204    A    G    111.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=12.43;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBXAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263552    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,137
7    139715342    rs2286200    A    G    124.46    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.78;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBXAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263552    GT:AD:DP:GQ:PL    0/1:2,5:7:58.95:154,0,59
7    139724358    rs2269996    G    A    505.74    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=3.716;DB;DP=27;Dels=0.0;FS=4.53;HRun=0;HaplotypeScore=1.9997;MQ=57.56;MQ0=0;MQRankSum=-1.344;QD=18.73;ReadPosRankSum=1.239;SNPEFF_AMINO_ACID_CHANGE=R87C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_139723551_139724466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541746    GT:AD:DP:GQ:PL    0/1:10,17:27:99:536,0,249
7    139724555    rs3735352    C    T    229.14    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=58.59;MQ0=0;MQRankSum=0.159;QD=6.94;ReadPosRankSum=0.357;SNPEFF_AMINO_ACID_CHANGE=P21;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_139724468_139724678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541746    GT:AD:DP:GQ:PL    0/1:21,11:33:99:259,0,569
7    139724742    rs3735351    G    C    177.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=16.12;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466597    GT:AD:DP:GQ:PL    0/1:5,6:11:99:207,0,172
7    139726207    rs2286198    G    A    243.98    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.372;QD=12.84;ReadPosRankSum=1.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466597    GT:AD:DP:GQ:PL    0/1:11,8:19:99:274,0,390
7    139727135    rs2286196    G    A    652.19    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.824;DB;DP=36;Dels=0.0;FS=7.162;HRun=3;HaplotypeScore=0.5784;MQ=58.83;MQ0=0;MQRankSum=0.674;QD=18.12;ReadPosRankSum=-0.706;SNPEFF_AMINO_ACID_CHANGE=F523;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_139727076_139727206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263549    GT:AD:DP:GQ:PL    0/1:15,21:36:99:682,0,460
7    139746521    rs34437191    AGTGT    A    191.46    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=106.9463;IndelType=D;MQ=50.39;MQ0=0;MQRankSum=0.0;QD=14.73;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263549    GT:AD:DP:GQ:PL    0/1:7,5:13:99:230,0,319
7    139754451    rs2362460    T    C    864.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.339;DB;DP=54;Dels=0.0;FS=1.064;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.827;QD=16.01;ReadPosRankSum=1.279;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467638    GT:AD:DP:GQ:PL    0/1:24,30:54:99:895,0,750
7    139756458    rs10156003    A    T    36.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=6.01;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467638    GT:AD:DP:GQ:PL    0/1:3,3:6:66.03:66,0,112
7    139757136    rs10237377    G    T    67.48    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.64;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467638    GT:AD:DP:GQ:PL    0/1:4,3:7:97.47:97,0,138
7    139757980    rs11979771    T    C    37.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.29;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263549    GT:AD:DP:GQ:PL    0/1:2,2:4:67.17:67,0,70
7    139820354    rs59225858    C    G    854.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.104;DB;DP=62;Dels=0.0;FS=3.323;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.421;QD=13.79;ReadPosRankSum=-1.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JHDM1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006967    GT:AD:DP:GQ:PL    0/1:31,31:62:99:885,0,1087
7    139827494    rs62491412    T    C    536.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.421;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.374;QD=17.89;ReadPosRankSum=-1.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JHDM1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006967    GT:AD:DP:GQ:PL    0/1:10,20:30:99:567,0,323
7    140036999    rs4332050    G    A    497.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326232    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:531,39,0
7    140043373    rs11772729    T    C    354.07    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.507;DB;DP=31;Dels=0.0;FS=2.051;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.426;QD=11.42;ReadPosRankSum=-0.223;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429996    GT:AD:DP:GQ:PL    0/1:19,12:31:99:384,0,576
7    140044979    rs6974016    C    T    813.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429996    GT:AD:DP:GQ:PL    1/1:0,27:27:69.15:846,69,0
7    140048262    rs112515175    CT    C    107.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=21;FS=0.0;HRun=16;HaplotypeScore=153.2448;IndelType=D;MQ=55.77;MQ0=0;MQRankSum=-1.159;QD=5.13;ReadPosRankSum=-0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464865    GT:AD:DP:GQ:PL    1/1:7,12:21:8.53:149,9,0
7    140051063    rs12703774    C    T    664.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464865    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:698,51,0
7    140051091    rs12703775    G    A    1093.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_AMINO_ACID_CHANGE=C288;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_140051073_140051251;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326232    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1126,84,0
7    140051848    rs12665885    C    T    472.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469193    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:506,39,0
7    140058164    rs10258709    T    C    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461089    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    140064051    rs66780610    CG    C    132.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=7;HaplotypeScore=17.7167;IndelType=D;MQ=61.78;MQ0=0;QD=22.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462881    GT:AD:DP:GQ:PL    1/1:0,6:6:18.01:174,18,0
7    140069361    rs4448174    G    C    764.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326232    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:798,60,0
7    140080087    rs62490396    C    G    1052.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=V65L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_140080082_140080190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326232    GT:AD:DP:GQ:PL    1/1:0,31:31:81.24:1086,81,0
7    140082363    rs6968618    G    A    827.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460560    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:861,69,0
7    140107822    rs12703836    C    T    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275874    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
7    140110677    rs2971690    G    A    956.57    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-1.377;QD=14.28;ReadPosRankSum=-0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275874    GT:AD:DP:GQ:PL    0/1:36,31:67:99:987,0,1182
7    140110781    rs2971689    G    C    2457.47    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=218;Dels=0.0;FS=1.719;HRun=1;HaplotypeScore=2.9951;MQ=59.53;MQ0=0;MQRankSum=0.616;QD=11.27;ReadPosRankSum=0.368;SNPEFF_AMINO_ACID_CHANGE=S70;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_140110773_140110855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275874    GT:AD:DP:GQ:PL    0/1:126,91:218:99:2487,0,3262
7    140110972    rs2948387    A    G    335.27    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.37;MQ0=0;MQRankSum=-0.702;QD=16.76;ReadPosRankSum=1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275874    GT:AD:DP:GQ:PL    0/1:9,11:20:99:365,0,256
7    140111486    rs2948389    A    T    172.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275874    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
7    140111509    rs2971688    G    C    128.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275874    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
7    140112048    rs6464764    C    A    114.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.62;MQ0=0;MQRankSum=-0.72;QD=19.16;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275874    GT:AD:DP:GQ:PL    0/1:2,4:6:26.71:145,0,27
7    140125750    rs2948386    T    C    1496.36    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=2.705;DB;DP=117;Dels=0.0;FS=4.919;HRun=0;HaplotypeScore=2.7774;MQ=59.41;MQ0=0;MQRankSum=0.562;QD=12.79;ReadPosRankSum=-0.154;SNPEFF_AMINO_ACID_CHANGE=Y152H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_140125682_140126050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356407    GT:AD:DP:GQ:PL    0/1:61,56:117:99:1526,0,1829
7    140156723    rs78256678    G    A    171.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=17.12;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467513    GT:AD:DP:GQ:PL    0/1:4,6:10:99:201,0,135
7    140218464    rs6852    C    A    554.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.67;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275884    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:588,45,0
7    140246894    rs1879901    A    G    122.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275884    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
7    140255623    rs4342501    T    C    737.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275884    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:770,57,0
7    140257841    rs10252031    A    G    259.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.17;MQ0=0;QD=25.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275884    GT:AD:DP:GQ:PL    1/1:0,10:10:27.02:292,27,0
7    140257907    rs12704002    C    T    706.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.42;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275884    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:739,57,0
7    140258000    rs12704003    T    C    1208.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.62;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=S634;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_140257943_140258012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275884    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1242,99,0
7    140301731    rs269243    G    T    2183.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=P156H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_140301203_140302342;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275884    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2216,186,0
7    140374018    .    TGGCCACCAACCTGA    T    815.06    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=4.452;DP=41;FS=3.902;HRun=0;HaplotypeScore=469.0642;IndelType=D;MQ=54.51;MQ0=0;MQRankSum=-1.809;QD=19.88;ReadPosRankSum=0.711;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_140372953_140374063;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000072869    GT:AD:DP:GQ:PL    0/1:31,10:41:99:854,0,3863
7    140397792    rs1267673    T    C    66.92    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=13.38;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072869    GT:AD:DP:GQ:PL    0/1:1,4:5:30.20:97,0,30
7    140398249    rs78319133    T    C    38.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.7;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000072869    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:68,0,22
7    140434597    rs112362735    G    GA    597.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.261;DB;DP=30;FS=0.0;HRun=10;HaplotypeScore=285.2468;IndelType=I;MQ=49.93;MQ0=0;MQRankSum=0.157;QD=19.91;ReadPosRankSum=-1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288602    GT:AD:DP:GQ:PL    1/1:11,19:30:19.93:639,20,0
7    140706157    rs6662    G    T    706.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485202    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:739,54,0
7    140774467    rs477223    C    G    127.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.46;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:160,15,0
7    141115890    rs4726452    G    C    1119.58    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.611;DB;DP=79;Dels=0.0;FS=0.86;HRun=1;HaplotypeScore=0.8321;MQ=59.47;MQ0=0;MQRankSum=-1.091;QD=14.17;ReadPosRankSum=0.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP5-842K16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461145    GT:AD:DP:GQ:PL    0/1:41,38:79:99:1150,0,1361
7    141336974    rs80336838    G    A    43.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=10.91;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355413    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:74,0,32
7    141349016    rs73171604    T    G    244.88    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.784;QD=12.89;ReadPosRankSum=0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355413    GT:AD:DP:GQ:PL    0/1:11,8:19:99:275,0,379
7    141362431    rs6949729    T    C    1426.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.42;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482493    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1460,114,0
7    141362693    rs2269984    A    T    163.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=11.7;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482493    GT:AD:DP:GQ:PL    0/1:7,7:14:99:194,0,251
7    141374030    rs141870936    A    AAC    259.93    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=45.9903;IndelType=I;MQ=60.11;MQ0=0;MQRankSum=0.747;QD=16.25;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482493    GT:AD:DP:GQ:PL    0/1:7,9:16:10.12:299,0,10
7    141414317    rs2072180    A    G    217.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WEE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397541    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
7    141420707    rs6971275    T    C    2820.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WEE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397541    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2854,223,0
7    141420768    rs6967301    A    G    2820.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=A264;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141420735_141420856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WEE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397541    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2854,220,0
7    141421031    rs6947065    G    T    166.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WEE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397541    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
7    141429224    rs35399772    TC    T    1133.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=1;HaplotypeScore=73.2224;IndelType=D;MQ=60.77;MQ0=0;QD=40.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WEE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493845    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1176,84,0
7    141429515    rs6962507    G    A    479.59    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.03;MQ0=0;MQRankSum=1.969;QD=19.98;ReadPosRankSum=-1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WEE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493845    GT:AD:DP:GQ:PL    0/1:7,17:24:99:510,0,216
7    141631813    rs1285937    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497554    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    141635538    rs5888023    C    CA    1075.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=54.829;IndelType=I;MQ=60.42;MQ0=0;QD=41.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497554    GT:AD:DP:GQ:PL    1/1:2,24:26:72.24:1118,72,0
7    141672604    rs10246939    T    C    1915.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.559;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=-1.732;QD=29.47;ReadPosRankSum=1.006;SNPEFF_AMINO_ACID_CHANGE=I296V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141672431_141673573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547270    GT:AD:DP:GQ:PL    1/1:1,64:65:99:1948,127,0
7    141672705    rs1726866    G    A    930.08    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.651;DB;DP=61;Dels=0.0;FS=7.136;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=15.25;ReadPosRankSum=-1.982;SNPEFF_AMINO_ACID_CHANGE=A262V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141672431_141673573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547270    GT:AD:DP:GQ:PL    0/1:30,31:61:99:960,0,895
7    141673345    rs713598    C    G    1832.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=A49P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141672431_141673573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547270    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1866,147,0
7    141705515    rs1285964    A    T    1096.31    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=90;Dels=0.0;FS=0.934;HRun=0;HaplotypeScore=0.9998;MQ=59.74;MQ0=0;MQRankSum=0.118;QD=12.18;ReadPosRankSum=0.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465654    GT:AD:DP:GQ:PL    0/1:50,40:90:99:1126,0,1446
7    141718951    rs1358305    C    T    1231.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.855;DB;DP=98;Dels=0.0;FS=0.899;HRun=1;HaplotypeScore=0.5784;MQ=59.76;MQ0=0;MQRankSum=0.608;QD=12.57;ReadPosRankSum=-1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465654    GT:AD:DP:GQ:PL    0/1:56,42:98:99:1262,0,1682
7    141730618    rs111279755    CTG    C    392.56    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.236;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=118.0606;IndelType=D;MQ=58.75;MQ0=1;MQRankSum=0.598;QD=11.55;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:19,15:33:99:432,0,361
7    141731340    rs4374898    G    A    129.25    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=8.08;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:10,6:16:99:159,0,294
7    141733848    rs4416750    A    G    108.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495045    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:141,12,0
7    141733994    rs74902718    T    TTG    1417.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=82.5203;IndelType=I;MQ=59.55;MQ0=0;QD=52.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495045    GT:AD:DP:GQ:PL    1/1:1,26:27:81.28:1460,81,0
7    141736798    rs4132774    T    C    1522.01    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.862;DB;DP=130;Dels=0.0;FS=0.724;HRun=0;HaplotypeScore=0.9916;MQ=59.86;MQ0=0;MQRankSum=1.225;QD=11.71;ReadPosRankSum=-0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:72,58:130:99:1552,0,2028
7    141738504    rs8180874    C    T    30.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.34;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:4,3:7:60.38:60,0,135
7    141740318    rs62477567    T    C    114.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.09;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490593    GT:AD:DP:GQ:PL    0/1:2,4:6:57.53:145,0,58
7    141740409    rs10215116    A    G    396.71    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.249;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.048;QD=12.8;ReadPosRankSum=-0.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490593    GT:AD:DP:GQ:PL    0/1:15,16:31:99:427,0,520
7    141747499    rs62477571    A    G    510.07    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.602;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.07;QD=18.22;ReadPosRankSum=2.948;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:12,16:28:99:540,0,419
7    141747658    rs2960746    A    G    3289.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=N735D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141747585_141747673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000548812    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3290,241,0
7    141750203    rs6971536    T    A    948.15    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-1.981;QD=15.8;ReadPosRankSum=0.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:28,32:60:99:978,0,943
7    141750316    rs6948116    C    T    188.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=18.82;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:4,6:10:99:218,0,115
7    141750472    rs62477572    A    G    823.41    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.592;DB;DP=57;Dels=0.0;FS=1.321;HRun=0;HaplotypeScore=0.9894;MQ=58.27;MQ0=0;MQRankSum=1.372;QD=14.45;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:26,31:57:99:853,0,786
7    141755105    rs6945098    G    A    74.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.84;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:2,3:5:63.53:104,0,64
7    141755161    rs62477616    C    T    136.08    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.72;ReadPosRankSum=-0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:9,5:14:99:166,0,326
7    141755358    rs67998329    T    C    2370.02    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=2.633;DB;DP=177;Dels=0.0;FS=0.568;HRun=0;HaplotypeScore=0.9947;MQ=59.76;MQ0=0;MQRankSum=1.582;QD=13.39;ReadPosRankSum=-1.054;SNPEFF_AMINO_ACID_CHANGE=I1105;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141755358_141755526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:95,81:177:99:2400,0,2773
7    141755795    rs57906508    C    T    246.26    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.609;DB;DP=26;Dels=0.0;FS=2.551;HRun=0;HaplotypeScore=0.9469;MQ=55.33;MQ0=0;MQRankSum=-0.415;QD=9.47;ReadPosRankSum=0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:15,11:26:99:276,0,523
7    141755987    rs2961080    G    T    70.80    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=14.16;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:101,0,69
7    141756502    rs62477617    A    G    619.20    PASS    AB=0.136;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.861;QD=28.15;ReadPosRankSum=-0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:3,19:22:61.57:649,0,62
7    141756581    rs62477618    C    T    1113.59    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.226;DB;DP=56;Dels=0.0;FS=6.382;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=19.89;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:22,34:56:99:1144,0,691
7    141759676    rs62477620    T    C    419.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.914;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.297;QD=8.73;ReadPosRankSum=-2.452;SNPEFF_AMINO_ACID_CHANGE=N1200;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141759656_141759766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000548812    GT:AD:DP:GQ:PL    0/1:24,24:48:99:449,0,799
7    141759846    rs4341082    C    T    67.62    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.27;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:2,4:6:56.34:98,0,56
7    141759994    rs4509233    T    C    402.35    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.277;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.257;QD=12.19;ReadPosRankSum=1.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:19,14:33:99:432,0,646
7    141760228    rs6959057    T    C    438.20    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.099;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.64;MQ0=0;MQRankSum=0.985;QD=6.85;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:45,19:64:99:468,0,1561
7    141760312    rs62477621    T    G    232.09    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.454;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.78;MQ0=0;MQRankSum=1.115;QD=12.22;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:11,8:19:99:262,0,404
7    141762625    rs62477625    A    G    607.08    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.43;MQ0=0;MQRankSum=0.038;QD=18.97;ReadPosRankSum=0.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:13,19:32:99:637,0,426
7    141764164    rs10271514    C    T    849.23    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.434;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.374;QD=17.33;ReadPosRankSum=0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:21,28:49:99:879,0,588
7    141765410    rs62477626    T    C    1911.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5767;MQ=38.1;MQ0=0;QD=29.87;SNPEFF_AMINO_ACID_CHANGE=F1424;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141765388_141765422;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000548812    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1945,165,0
7    141766146    rs2961069    T    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    141767349    rs4285406    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    141794763    rs5888028    ATT    A    558.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.583;DB;DP=30;FS=0.0;HRun=14;HaplotypeScore=186.6474;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=0.377;QD=18.63;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    1/1:7,22:30:59.85:601,60,0
7    141794790    rs4259331    A    G    570.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:604,48,0
7    141795281    rs3936103    A    C    426.09    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.623;QD=16.39;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:11,15:26:99:456,0,380
7    141796131    rs6975672    G    A    1331.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.41;MQ0=8;QD=20.49;SNPEFF_AMINO_ACID_CHANGE=E1640;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141796131_141796215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000549489    GT:AD:DP:GQ:PL    1/1:7,58:65:99:1365,123,0
7    141796244    rs75355762    G    T    1084.03    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.942;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.63;MQ0=0;MQRankSum=0.427;QD=15.06;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485078    GT:AD:DP:GQ:PL    0/1:29,43:72:99:1114,0,705
7    141796250    rs6976953    C    T    1930.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.42;MQ0=0;QD=29.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485078    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1963,168,0
7    141796339    rs62479367    T    C    186.05    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.66;MQ0=0;MQRankSum=-0.4;QD=13.29;ReadPosRankSum=-1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485078    GT:AD:DP:GQ:PL    0/1:5,9:14:99:216,0,170
7    141796364    rs62479368    A    G    145.23    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.08;MQ0=0;MQRankSum=0.876;QD=16.14;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485078    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,118
7    141797564    rs11976181    T    C    808.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485078    GT:AD:DP:GQ:PL    1/1:0,25:25:69.19:841,69,0
7    141799396    rs62479371    C    T    1301.79    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.244;DB;DP=87;Dels=0.0;FS=9.031;HRun=0;HaplotypeScore=0.8321;MQ=56.65;MQ0=0;MQRankSum=1.639;QD=14.96;ReadPosRankSum=-0.132;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485078    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1332,0,1227
7    141802905    rs62479373    A    G    58.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=11.6;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:2,3:5:66.25:88,0,66
7    141803419    rs62479374    A    G    74.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.92;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:105,0,66
7    141805348    rs4410826    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475668    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    141831661    rs4473940    A    G    456.41    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.082;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.456;QD=10.87;ReadPosRankSum=-0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    0/1:22,20:42:99:486,0,715
7    141838362    rs6464465    C    G    909.90    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.315;DB;DP=83;Dels=0.0;FS=3.293;HRun=0;HaplotypeScore=0.734;MQ=58.6;MQ0=0;MQRankSum=0.042;QD=10.96;ReadPosRankSum=0.201;SNPEFF_AMINO_ACID_CHANGE=F327L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141838342_141838467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    0/1:51,32:83:99:940,0,1665
7    141872874    rs9986802    T    C    214.46    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=17.87;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469547    GT:AD:DP:GQ:PL    0/1:5,7:12:99:244,0,169
7    141872892    rs9986873    G    A    212.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.893;QD=13.26;ReadPosRankSum=1.523;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469547    GT:AD:DP:GQ:PL    0/1:8,8:16:99:242,0,285
7    141873000    rs9986803    T    A    1162.03    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.95;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8745;MQ=59.74;MQ0=0;MQRankSum=0.056;QD=13.36;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469547    GT:AD:DP:GQ:PL    0/1:44,43:87:99:1192,0,1386
7    141882929    rs10548257    TTTTTA    T    254.59    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=3.502;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=115.7054;IndelType=D;MQ=58.99;MQ0=0;MQRankSum=-0.037;QD=11.07;ReadPosRankSum=1.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    0/1:17,6:23:99:294,0,1374
7    141886155    rs10258662    C    G    43.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.62;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
7    141896059    rs4236467    A    G    608.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=35.82;SNPEFF_AMINO_ACID_CHANGE=A1452;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141895954_141896087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:642,48,0
7    141897595    rs3110843    T    C    917.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,26:26:75.22:950,75,0
7    141898023    rs4260813    C    A    455.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.213;DB;DP=37;Dels=0.0;FS=1.496;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.08;QD=12.32;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    0/1:20,16:37:99:486,0,651
7    141898522    rs2960768    T    A    2318.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_AMINO_ACID_CHANGE=A1645;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141898415_141898539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2351,175,0
7    141898680    rs2961065    T    C    73.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
7    141898697    rs2961064    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    141899519    rs6973313    A    G    169.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
7    141899660    rs11402165    C    CT    586.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.934;DB;DP=49;FS=2.485;HRun=14;HaplotypeScore=319.4336;IndelType=I;MQ=54.01;MQ0=0;MQRankSum=-0.259;QD=11.96;ReadPosRankSum=-0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:15,30:49:24.38:628,24,0
7    141901117    rs6945482    A    G    98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=24.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:130,12,0
7    141901122    rs6962841    G    A    124.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
7    141901322    rs6963175    G    A    3203.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3236,250,0
7    141901506    rs6464469    C    T    1079.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1220K2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477922    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1113,81,0
7    141940577    rs1041846    T    C    441.09    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.18;DB;DP=31;Dels=0.0;FS=3.637;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.821;QD=14.23;ReadPosRankSum=-0.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:13,18:31:99:471,0,352
7    141940894    rs1041847    G    C    35.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=8.86;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:2,2:4:65.45:65,0,72
7    141942624    rs12703447    G    A    190.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=21.16;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:3,6:9:82.73:220,0,83
7    141942745    rs5012035    T    C    411.70    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=3.434;DB;DP=32;Dels=0.0;FS=1.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=12.87;ReadPosRankSum=1.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:15,17:32:99:442,0,430
7    141942760    rs5012034    T    C    394.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.771;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.24;QD=13.16;ReadPosRankSum=0.982;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:15,15:30:99:425,0,417
7    141942765    rs5012033    A    G    408.06    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.811;DB;DP=29;Dels=0.0;FS=1.664;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.284;QD=14.07;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:14,15:29:99:438,0,417
7    141943541    rs4376428    G    A    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.79;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:3,2:5:68.95:69,0,92
7    141943552    rs6944336    A    G    33.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.71;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:3,2:5:63.53:64,0,105
7    141943812    rs6948507    C    G    493.33    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.432;DB;DP=34;Dels=0.0;FS=7.712;HRun=0;HaplotypeScore=0.9469;MQ=59.32;MQ0=0;MQRankSum=-0.19;QD=14.51;ReadPosRankSum=-0.914;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:16,18:34:99:523,0,500
7    141943901    rs4382388    G    A    269.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=22;Dels=0.0;FS=4.228;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=12.23;ReadPosRankSum=-0.297;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466789    GT:AD:DP:GQ:PL    0/1:12,10:22:99:299,0,409
7    141944053    rs4236468    C    G    114.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460233    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:147,12,0
7    141945016    rs6464475    G    A    119.39    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.731;QD=23.88;ReadPosRankSum=-0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460233    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:149,0,27
7    141945246    rs7789057    T    C    194.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.91;ReadPosRankSum=0.663;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460233    GT:AD:DP:GQ:PL    0/1:7,7:14:99:225,0,205
7    141945935    rs6960727    G    C    259.08    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=28;Dels=0.0;FS=3.751;HRun=1;HaplotypeScore=0.7887;MQ=59.17;MQ0=0;MQRankSum=-0.606;QD=9.25;ReadPosRankSum=0.712;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460233    GT:AD:DP:GQ:PL    0/1:17,11:28:99:289,0,486
7    141946852    rs141387406    G    A    485.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=MOXD2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460233    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:519,42,0
7    141947584    rs916012    A    G    32.32    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.62;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:5,2:7:62.31:62,0,113
7    141947685    rs916013    T    C    491.73    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.379;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.89;MQ0=0;MQRankSum=0.688;QD=11.71;ReadPosRankSum=1.138;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:23,19:42:99:522,0,601
7    141948033    rs916015    C    T    32.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=10.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:62,0,30
7    141948121    rs10261264    C    A    122.61    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.62;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:4,5:9:99:153,0,139
7    141948152    rs12703448    C    T    112.18    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.212;QD=8.01;ReadPosRankSum=-0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:8,5:13:99:142,0,252
7    141948375    rs10264758    A    T    43.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:74,0,24
7    141951855    rs4726506    A    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    141952618    rs6964443    A    G    72.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:102,0,67
7    141955612    .    T    C    156.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=17.4;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:3,6:9:88.82:187,0,89
7    141957504    rs7786497    A    G    1333.88    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=86;Dels=0.0;FS=3.118;HRun=1;HaplotypeScore=3.5322;MQ=60.0;MQ0=0;MQRankSum=-0.671;QD=15.51;ReadPosRankSum=-0.49;SNPEFF_AMINO_ACID_CHANGE=A8;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_141957488_141957568;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:37,49:86:99:1364,0,1137
7    141957653    rs35443843    G    A    240.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.289;QD=20.04;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547058    GT:AD:DP:GQ:PL    0/1:4,8:12:99:271,0,125
7    141969572    rs2001011    T    C    69.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.89;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=U66059.29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334288    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,128
7    141969592    rs2001012    T    C    65.58    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=6.56;ReadPosRankSum=-0.365;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=U66059.29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334288    GT:AD:DP:GQ:PL    0/1:6,4:10:95.57:96,0,210
7    141971083    rs138063417    A    C    845.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.07;MQ0=0;QD=33.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=U66059.29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334288    GT:AD:DP:GQ:PL    1/1:0,25:25:69.19:878,69,0
7    142001030    rs56095598    A    G    568.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_pseudogene;SNPEFF_GENE_NAME=TRBV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476502    GT:AD:DP:GQ:PL    1/1:0,20:20:48.11:601,48,0
7    142008718    .    T    C    123.66    QDFilter2    AB=0.845;AC=1;AF=0.50;AN=2;BaseQRankSum=3.6;DP=174;Dels=0.0;FS=57.593;HRun=0;HaplotypeScore=1.4972;MQ=56.4;MQ0=0;MQRankSum=-7.935;QD=0.71;ReadPosRankSum=-1.812;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:147,27:174:99:154,0,4826
7    142008727    .    G    T    117.65    FSFilter60;QDFilter2;SnpCluster    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.467;DP=176;Dels=0.0;FS=60.724;HRun=0;HaplotypeScore=2.5367;MQ=56.31;MQ0=0;MQRankSum=-8.26;QD=0.67;ReadPosRankSum=-1.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:149,27:176:99:148,0,4962
7    142008733    .    A    G    139.03    QDFilter2;SnpCluster    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.229;DP=174;Dels=0.0;FS=56.427;HRun=0;HaplotypeScore=2.2829;MQ=56.68;MQ0=0;MQRankSum=-7.854;QD=0.8;ReadPosRankSum=-0.806;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:150,24:174:99:169,0,5097
7    142008737    .    T    C    172.48    QDFilter2;SnpCluster    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=1.425;DP=173;Dels=0.0;FS=59.92;HRun=0;HaplotypeScore=2.2829;MQ=56.52;MQ0=0;MQRankSum=-7.985;QD=1.0;ReadPosRankSum=-1.182;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:148,25:173:99:202,0,4959
7    142008783    .    A    G    741.94    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.206;DP=198;Dels=0.0;FS=6.821;HRun=0;HaplotypeScore=4.2963;MQ=54.81;MQ0=0;MQRankSum=-9.183;QD=3.75;ReadPosRankSum=-1.507;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:154,44:198:99:772,0,5006
7    142008785    .    A    C    734.05    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.02;DP=201;Dels=0.0;FS=8.102;HRun=0;HaplotypeScore=4.2963;MQ=54.76;MQ0=0;MQRankSum=-9.433;QD=3.65;ReadPosRankSum=-1.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:156,45:201:99:764,0,5078
7    142008799    rs17236    C    T    78.01    HaplotypeScoreFilter13;QDFilter2    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=1.437;DB;DP=210;Dels=0.0;FS=3.058;HRun=1;HaplotypeScore=26.4293;MQ=54.42;MQ0=0;MQRankSum=-6.587;QD=0.37;ReadPosRankSum=1.712;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:186,24:210:99:108,0,5843
7    142008803    .    C    T    954.14    HaplotypeScoreFilter13    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=2.607;DP=207;Dels=0.0;FS=3.095;HRun=2;HaplotypeScore=25.431;MQ=54.33;MQ0=0;MQRankSum=-9.46;QD=4.61;ReadPosRankSum=2.208;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:155,51:207:99:984,0,4882
7    142008879    .    C    T    632.61    SnpCluster    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=4.819;DP=147;Dels=0.0;FS=13.022;HRun=1;HaplotypeScore=1.9788;MQ=54.22;MQ0=0;MQRankSum=-7.348;QD=4.3;ReadPosRankSum=1.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:107,40:147:99:663,0,3298
7    142008881    .    G    A    638.32    SnpCluster    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.233;DP=144;Dels=0.0;FS=13.323;HRun=0;HaplotypeScore=1.912;MQ=54.09;MQ0=0;MQRankSum=-7.279;QD=4.43;ReadPosRankSum=0.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:104,40:144:99:668,0,3332
7    142008884    .    A    G    584.24    SnpCluster    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=4.606;DP=140;Dels=0.0;FS=14.239;HRun=0;HaplotypeScore=1.912;MQ=54.09;MQ0=0;MQRankSum=-6.648;QD=4.17;ReadPosRankSum=-0.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:101,39:140:99:614,0,3308
7    142008887    .    T    C    608.50    SnpCluster    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=5.272;DP=135;Dels=0.0;FS=14.324;HRun=1;HaplotypeScore=1.912;MQ=54.05;MQ0=0;MQRankSum=-6.871;QD=4.51;ReadPosRankSum=-0.969;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:97,38:135:99:638,0,3150
7    142008932    .    GC    G    484.67    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=6.35;DP=72;FS=4.87;HRun=1;HaplotypeScore=477.6552;IndelType=D;MQ=54.02;MQ0=0;MQRankSum=-5.417;QD=6.73;ReadPosRankSum=2.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:53,19:72:99:524,0,2326
7    142008939    .    A    C    62.61    QDFilter2    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.894;DP=61;Dels=0.02;FS=4.99;HRun=1;HaplotypeScore=2.9313;MQ=52.99;MQ0=0;MQRankSum=-4.91;QD=1.01;ReadPosRankSum=0.514;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:43,18:61:92.60:93,0,1417
7    142008941    .    C    T    62.68    QDFilter2    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=4.598;DP=62;Dels=0.0;FS=4.99;HRun=0;HaplotypeScore=2.9313;MQ=52.99;MQ0=0;MQRankSum=-5.187;QD=1.01;ReadPosRankSum=0.892;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:44,18:62:92.67:93,0,1221
7    142008959    .    G    A    102.20    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.424;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=-4.296;QD=2.32;ReadPosRankSum=0.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:30,14:44:99:132,0,1114
7    142013130    rs361400    C    T    344.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=12.29;ReadPosRankSum=-0.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    0/1:14,14:28:99:374,0,457
7    142013384    rs361401    G    C    5321.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9153;MQ=59.52;MQ0=0;QD=34.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390387    GT:AD:DP:GQ:PL    1/1:0,154:154:99:5321,394,0
7    142028108    rs361428    A    C    1184.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9315;MQ=58.71;MQ0=0;QD=32.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390353    GT:AD:DP:GQ:PL    1/1:0,36:36:96.29:1217,96,0
7    142028118    rs361429    C    A    1370.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.5777;MQ=58.75;MQ0=0;MQRankSum=1.648;QD=32.64;ReadPosRankSum=1.056;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390353    GT:AD:DP:GQ:PL    1/1:1,41:42:99:1404,111,0
7    142028304    .    T    C    574.34    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=2.999;DP=108;Dels=0.0;FS=11.897;HRun=1;HaplotypeScore=0.8667;MQ=53.22;MQ0=3;MQRankSum=-7.518;QD=5.32;ReadPosRankSum=-2.233;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390353    GT:AD:DP:GQ:PL    0/1:79,29:108:99:604,0,2496
7    142028355    .    A    G    465.04    PASS    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.58;DP=137;Dels=0.0;FS=0.942;HRun=2;HaplotypeScore=0.8321;MQ=52.11;MQ0=8;MQRankSum=-6.912;QD=3.39;ReadPosRankSum=2.452;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390353    GT:AD:DP:GQ:PL    0/1:103,34:137:99:495,0,3605
7    142045216    rs2734061    C    T    248.21    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.53;MQ0=0;MQRankSum=-0.449;QD=13.06;ReadPosRankSum=-1.021;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:10,9:19:99:278,0,343
7    142045446    rs56060483    G    C    2473.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.992;DB;DP=140;Dels=0.0;FS=0.648;HRun=1;HaplotypeScore=2.5929;MQ=57.66;MQ0=0;MQRankSum=-1.54;QD=17.67;ReadPosRankSum=-0.221;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:56,84:140:99:2503,0,1603
7    142045449    .    A    G    2332.01    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.899;DP=136;Dels=0.0;FS=2.222;HRun=0;HaplotypeScore=3.3269;MQ=58.11;MQ0=0;MQRankSum=-0.698;QD=17.15;ReadPosRankSum=0.356;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:57,79:136:99:2362,0,1798
7    142045518    rs1960210    G    A    2993.32    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=2.892;DB;DP=174;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7978;MQ=56.74;MQ0=0;MQRankSum=-1.769;QD=17.2;ReadPosRankSum=-1.114;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:69,105:174:99:3023,0,1870
7    142045613    rs2010177    G    T    2911.48    PASS    AB=0.498;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.717;DB;DP=225;Dels=0.0;FS=5.932;HRun=0;HaplotypeScore=2.7606;MQ=53.17;MQ0=0;MQRankSum=-5.777;QD=12.94;ReadPosRankSum=0.234;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:112,113:225:99:2941,0,3726
7    142045690    rs61750021    A    G    1201.15    SnpCluster    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.22;DB;DP=230;DS;Dels=0.0;FS=14.749;HRun=1;HaplotypeScore=0.9983;MQ=50.31;MQ0=0;MQRankSum=-11.492;QD=5.22;ReadPosRankSum=-2.634;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:139,91:230:99:1231,0,4528
7    142045692    rs61750022    A    G    1290.51    SnpCluster    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=3.094;DB;DP=242;DS;Dels=0.0;FS=13.86;HRun=1;HaplotypeScore=0.9983;MQ=50.66;MQ0=0;MQRankSum=-9.934;QD=5.33;ReadPosRankSum=-2.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:144,98:242:99:1321,0,4416
7    142045693    .    C    T    1286.43    SnpCluster    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.811;DP=249;DS;Dels=0.0;FS=10.991;HRun=1;HaplotypeScore=1.9966;MQ=50.72;MQ0=0;MQRankSum=-10.357;QD=5.17;ReadPosRankSum=-2.908;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:148,100:249:99:1316,0,4662
7    142045802    rs2855871    T    C    2557.62    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.343;DB;DP=228;DS;Dels=0.0;FS=2.467;HRun=0;HaplotypeScore=3.7001;MQ=53.61;MQ0=0;MQRankSum=-4.839;QD=11.22;ReadPosRankSum=0.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:112,116:228:99:2588,0,3347
7    142045848    rs17225    T    C    3987.33    PASS    AB=0.244;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=180;DS;Dels=0.0;FS=0.852;HRun=0;HaplotypeScore=3.4641;MQ=54.84;MQ0=0;MQRankSum=-2.581;QD=22.15;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:44,136:180:99:3987,0,1160
7    142045877    rs17226    G    T    807.61    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=3.229;DB;DP=136;Dels=0.0;FS=5.985;HRun=1;HaplotypeScore=1.8664;MQ=55.57;MQ0=0;MQRankSum=1.708;QD=5.94;ReadPosRankSum=-0.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:103,33:136:99:838,0,3369
7    142045897    rs361402    C    T    612.84    HaplotypeScoreFilter13    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=6.673;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=21.9078;MQ=55.05;MQ0=0;MQRankSum=2.054;QD=6.25;ReadPosRankSum=0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:75,23:98:99:643,0,2242
7    142045899    rs2974900    A    G    1522.52    HaplotypeScoreFilter13    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=20.9746;MQ=55.47;MQ0=0;MQRankSum=-1.465;QD=16.37;ReadPosRankSum=-0.242;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:45,48:93:99:1553,0,1567
7    142045912    .    A    G    1096.36    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=4.344;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=54.51;MQ0=0;MQRankSum=-2.724;QD=13.88;ReadPosRankSum=-1.435;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:40,38:79:99:1126,0,1353
7    142045924    rs1811089    A    G    489.94    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=5.567;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.25;MQ0=0;MQRankSum=2.532;QD=7.78;ReadPosRankSum=2.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390392    GT:AD:DP:GQ:PL    0/1:46,17:63:99:520,0,1496
7    142099379    .    T    A    56.22    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.167;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-3.567;QD=2.34;ReadPosRankSum=-0.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:18,6:24:86.21:86,0,650
7    142099385    .    C    G    86.32    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.064;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.25;MQ0=0;MQRankSum=-3.006;QD=3.32;ReadPosRankSum=-1.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:19,7:26:99:116,0,694
7    142099421    .    G    A    273.07    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.767;DP=46;Dels=0.0;FS=16.225;HRun=0;HaplotypeScore=0.0;MQ=50.15;MQ0=0;MQRankSum=-4.648;QD=5.94;ReadPosRankSum=-1.654;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:28,18:46:99:303,0,997
7    142099425    .    A    G    269.52    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.813;DP=48;Dels=0.0;FS=14.004;HRun=0;HaplotypeScore=0.0;MQ=49.45;MQ0=0;MQRankSum=-4.737;QD=5.61;ReadPosRankSum=-1.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:28,20:48:99:300,0,1046
7    142099438    .    A    G    575.77    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.402;DP=67;Dels=0.0;FS=6.06;HRun=0;HaplotypeScore=0.0;MQ=48.32;MQ0=0;MQRankSum=-6.256;QD=8.59;ReadPosRankSum=-0.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:36,31:67:99:606,0,1165
7    142099484    .    G    C    677.03    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.659;DP=81;Dels=0.0;FS=3.45;HRun=1;HaplotypeScore=0.0;MQ=49.31;MQ0=0;MQRankSum=-7.168;QD=8.36;ReadPosRankSum=1.874;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:47,34:81:99:707,0,1388
7    142099512    .    T    G    503.20    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.223;DP=73;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=0.0;MQ=50.38;MQ0=0;MQRankSum=-6.735;QD=6.89;ReadPosRankSum=-2.826;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:46,27:73:99:533,0,1563
7    142099533    .    T    C    121.10    QDFilter2    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=1.176;DP=74;Dels=0.0;FS=4.491;HRun=3;HaplotypeScore=0.9665;MQ=52.19;MQ0=0;MQRankSum=-6.647;QD=1.64;ReadPosRankSum=-2.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:53,21:74:99:151,0,1681
7    142099537    .    G    T    34.20    QDFilter2    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.591;DP=72;Dels=0.0;FS=9.712;HRun=0;HaplotypeScore=0.9665;MQ=52.69;MQ0=0;MQRankSum=-6.319;QD=0.48;ReadPosRankSum=-1.864;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:53,19:72:64.20:64,0,1668
7    142104420    rs56362856    A    T    1093.66    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=74;Dels=0.0;FS=3.325;HRun=0;HaplotypeScore=1.8625;MQ=53.89;MQ0=1;MQRankSum=2.025;QD=14.78;ReadPosRankSum=1.337;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390379    GT:AD:DP:GQ:PL    0/1:40,34:74:99:1124,0,1241
7    142119831    rs361390    G    A    2474.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DB;DP=80;Dels=0.0;FS=2.947;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.71;QD=30.93;ReadPosRankSum=-1.834;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390376    GT:AD:DP:GQ:PL    1/1:2,78:80:99:2507,125,0
7    142120168    rs57417024    T    TCA    836.35    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.409;DB;DP=33;FS=2.601;HRun=0;HaplotypeScore=115.3908;IndelType=I;MQ=59.92;MQ0=0;MQRankSum=0.778;QD=25.34;ReadPosRankSum=0.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390376    GT:AD:DP:GQ:PL    0/1:14,18:33:40.23:875,0,40
7    142124170    rs361452    C    T    8561.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.12;MQ=59.51;MQ0=0;MQRankSum=-0.913;QD=34.38;ReadPosRankSum=1.042;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390376    GT:AD:DP:GQ:PL    1/1:1,247:249:99:8561,632,0
7    142124424    rs361449    T    G    2788.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.57;MQ0=2;QD=30.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390376    GT:AD:DP:GQ:PL    1/1:2,89:91:99:2821,226,0
7    142131334    .    G    A    72.76    QDFilter2    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.425;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.63;MQ0=1;MQRankSum=-4.551;QD=1.73;ReadPosRankSum=2.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390375    GT:AD:DP:GQ:PL    0/1:32,10:42:99:103,0,1147
7    142131779    .    A    T    125.76    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DP=62;Dels=0.0;FS=3.027;HRun=0;HaplotypeScore=0.0;MQ=53.99;MQ0=2;MQRankSum=-4.417;QD=2.03;ReadPosRankSum=0.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390375    GT:AD:DP:GQ:PL    0/1:47,15:62:99:156,0,1600
7    142131832    .    C    T    110.61    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DP=43;Dels=0.0;FS=1.696;HRun=1;HaplotypeScore=0.734;MQ=53.11;MQ0=2;MQRankSum=-3.951;QD=2.57;ReadPosRankSum=-0.842;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390375    GT:AD:DP:GQ:PL    0/1:32,11:43:99:141,0,975
7    142131836    .    C    G    102.11    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=53.11;MQ0=2;MQRankSum=-3.822;QD=2.37;ReadPosRankSum=-1.393;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390375    GT:AD:DP:GQ:PL    0/1:32,11:43:99:132,0,997
7    142139259    rs361374    G    A    1564.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=56.94;MQ0=0;MQRankSum=2.111;QD=28.97;ReadPosRankSum=-0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390373    GT:AD:DP:GQ:PL    1/1:2,51:54:57.23:1597,57,0
7    142139271    rs146977487    T    C    1376.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.289;DB;DP=64;Dels=0.0;FS=4.921;HRun=0;HaplotypeScore=5.4841;MQ=57.05;MQ0=0;MQRankSum=1.675;QD=21.51;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390373    GT:AD:DP:GQ:PL    1/1:1,63:64:99:1410,120,0
7    142139272    rs138227832    G    A    1314.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.615;DB;DP=65;Dels=0.0;FS=4.921;HRun=0;HaplotypeScore=5.4841;MQ=57.1;MQ0=0;MQRankSum=1.321;QD=20.22;ReadPosRankSum=-0.734;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390373    GT:AD:DP:GQ:PL    1/1:1,62:65:99:1347,114,0
7    142139348    rs73742284    C    T    2750.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8871;MQ=57.96;MQ0=0;QD=33.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390373    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2784,220,0
7    142139624    rs59112965    G    GCACA    819.54    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.066;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=226.6015;IndelType=I;MQ=49.52;MQ0=0;MQRankSum=-0.199;QD=21.57;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390373    GT:AD:DP:GQ:PL    0/1:22,10:38:36.27:859,0,36
7    142139783    rs361371    C    A    2188.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=58.71;MQ0=0;QD=30.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390373    GT:AD:DP:GQ:PL    1/1:0,71:72:99:2221,166,0
7    142139824    rs361370    G    C    1405.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390373    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1438,111,0
7    142148765    .    A    G    55.89    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=50.15;MQ0=1;MQRankSum=-2.855;QD=3.99;ReadPosRankSum=-1.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    0/1:9,5:14:85.88:86,0,283
7    142148776    .    A    G    46.87    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.371;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=51.49;MQ0=1;MQRankSum=-2.938;QD=2.93;ReadPosRankSum=-0.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    0/1:11,5:16:76.86:77,0,394
7    142148878    .    T    C    434.12    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=6.062;DP=86;Dels=0.0;FS=11.008;HRun=0;HaplotypeScore=2.4619;MQ=52.63;MQ0=0;MQRankSum=-6.353;QD=5.05;ReadPosRankSum=-1.793;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    0/1:62,24:86:99:464,0,1896
7    142148881    .    C    A    469.97    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=3.092;DP=91;Dels=0.0;FS=6.882;HRun=1;HaplotypeScore=4.4073;MQ=52.19;MQ0=0;MQRankSum=-6.734;QD=5.11;ReadPosRankSum=-1.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    0/1:64,27:91:99:500,0,2082
7    142148919    .    C    T    732.83    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=5.354;DP=155;Dels=0.0;FS=1.84;HRun=0;HaplotypeScore=1.992;MQ=53.2;MQ0=1;MQRankSum=-8.678;QD=4.73;ReadPosRankSum=1.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    0/1:112,42:155:99:763,0,3158
7    142148963    .    C    T    204.61    QDFilter2;SnpCluster    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=0.506;DP=159;Dels=0.0;FS=12.829;HRun=0;HaplotypeScore=2.3503;MQ=53.93;MQ0=1;MQRankSum=-8.296;QD=1.29;ReadPosRankSum=-1.032;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    0/1:126,33:159:99:235,0,3974
7    142148969    .    A    T    132.29    QDFilter2;SnpCluster    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DP=150;Dels=0.0;FS=0.986;HRun=0;HaplotypeScore=3.1389;MQ=54.27;MQ0=1;MQRankSum=-8.017;QD=0.88;ReadPosRankSum=-1.251;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    0/1:121,29:150:99:162,0,3965
7    142148970    .    A    C    125.73    QDFilter2;SnpCluster    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.873;DP=151;Dels=0.0;FS=2.104;HRun=1;HaplotypeScore=3.1389;MQ=54.27;MQ0=1;MQRankSum=-7.641;QD=0.83;ReadPosRankSum=-1.416;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    0/1:122,29:151:99:156,0,3907
7    142149160    rs17217    T    G    2710.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.392;DB;DP=107;Dels=0.0;FS=2.266;HRun=0;HaplotypeScore=0.9159;MQ=51.91;MQ0=1;MQRankSum=4.884;QD=25.33;ReadPosRankSum=2.572;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    1/1:10,97:107:99:2744,118,0
7    142149349    rs140504979    A    C    1398.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.28;MQ0=1;QD=29.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1432,108,0
7    142149523    rs73742276    T    C    244.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390372    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
7    142161763    rs361446    T    C    528.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.123;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.735;QD=31.08;ReadPosRankSum=-1.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390371    GT:AD:DP:GQ:PL    1/1:1,16:17:5.51:560,6,0
7    142162001    rs73742263    A    C    5522    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9322;MQ=59.85;MQ0=0;QD=35.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390371    GT:AD:DP:GQ:PL    1/1:0,157:157:99:5522,409,0
7    142162148    rs71877    C    T    3909.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.81;MQ0=0;QD=34.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390371    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3910,307,0
7    142162278    rs361443    C    T    1895.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=33.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390371    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1929,153,0
7    142162306    rs361442    A    G    1958.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=33.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390371    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1992,156,0
7    142162482    rs361441    T    A    75.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390371    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:108,9,0
7    142168187    rs11970798    G    C    38.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.8404;MQ=44.1;MQ0=0;MQRankSum=1.026;QD=9.56;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454561    GT:AD:DP:GQ:PL    0/1:2,2:4:12.66:68,0,13
7    142168414    .    G    C    50.32    QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=2.815;DP=96;Dels=0.0;FS=10.79;HRun=1;HaplotypeScore=0.0;MQ=54.42;MQ0=2;MQRankSum=-6.276;QD=0.52;ReadPosRankSum=0.249;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454561    GT:AD:DP:GQ:PL    0/1:78,18:96:80.32:80,0,2232
7    142168429    rs55634899    A    G    3088.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.87;MQ0=2;QD=29.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454561    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3122,259,0
7    142168452    rs361355    C    A    3423.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=2;QD=31.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454561    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3424,265,0
7    142168662    rs73742240    C    T    115.04    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.58;MQ0=0;QD=1.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454561    GT:AD:DP:GQ:PL    1/1:0,73:73:15.01:148,15,0
7    142168663    rs361352    G    C    36    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.58;MQ0=0;QD=0.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454561    GT:AD:DP:GQ:PL    1/1:0,73:73:8.96:68,9,0
7    142168819    rs361350    G    A    967.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.3;MQ0=1;QD=30.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454561    GT:AD:DP:GQ:PL    1/1:0,32:32:84.24:1001,84,0
7    142168856    rs73742239    C    G    852.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9973;MQ=38.79;MQ0=1;QD=27.49;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_142168796_142169045;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV5-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454561    GT:AD:DP:GQ:PL    1/1:0,31:31:75.20:885,75,0
7    142176378    rs361393    A    G    1844.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1877,147,0
7    142180618    .    T    C    757.25    FSFilter60;MQRankSumFilter12_5;SnpCluster    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=5.92;DP=249;DS;Dels=0.0;FS=215.64;HRun=0;HaplotypeScore=5.2875;MQ=51.72;MQ0=0;MQRankSum=-12.552;QD=3.04;ReadPosRankSum=0.007;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:169,80:249:99:787,0,5558
7    142180619    .    G    A    759.31    FSFilter60;SnpCluster    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DP=247;DS;Dels=0.0;FS=220.101;HRun=0;HaplotypeScore=5.2875;MQ=51.65;MQ0=0;MQRankSum=-12.45;QD=3.07;ReadPosRankSum=0.076;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:166,80:247:99:789,0,5553
7    142180625    .    T    C    839.02    FSFilter60;SnpCluster    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=0.443;DP=249;DS;Dels=0.0;FS=234.823;HRun=1;HaplotypeScore=5.4961;MQ=51.29;MQ0=0;MQRankSum=-12.414;QD=3.37;ReadPosRankSum=0.599;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:164,85:249:99:869,0,5439
7    142180646    .    A    C    448.11    FSFilter60;QDFilter2    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.23;DP=248;DS;Dels=0.0;FS=138.033;HRun=2;HaplotypeScore=2.7256;MQ=50.68;MQ0=0;MQRankSum=-12.109;QD=1.81;ReadPosRankSum=-2.462;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:155,93:248:99:478,0,5106
7    142180647    .    G    T    482.50    FSFilter60;QDFilter2    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=4.535;DP=250;DS;Dels=0.0;FS=122.725;HRun=0;HaplotypeScore=2.7256;MQ=50.29;MQ0=1;MQRankSum=-12.223;QD=1.93;ReadPosRankSum=-3.218;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:152,98:250:99:512,0,4963
7    142180704    .    G    T    3386.76    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.135;DP=244;DS;Dels=0.0;FS=5.102;HRun=0;HaplotypeScore=5.5536;MQ=47.59;MQ0=1;MQRankSum=-11.002;QD=13.82;ReadPosRankSum=2.164;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:110,134:244:99:3387,0,3263
7    142180737    .    T    A    3898.31    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=4.675;DP=250;DS;Dels=0.0;FS=18.743;HRun=0;HaplotypeScore=1.7987;MQ=46.09;MQ0=3;MQRankSum=-10.364;QD=15.59;ReadPosRankSum=2.969;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:98,152:250:99:3898,0,2927
7    142180770    .    T    C    1891.54    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.276;DP=177;DS;Dels=0.0;FS=24.744;HRun=2;HaplotypeScore=0.9332;MQ=48.25;MQ0=3;MQRankSum=-8.897;QD=10.69;ReadPosRankSum=-1.435;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:87,90:177:99:1922,0,2824
7    142180821    .    GAGA    G    159.50    QDFilter2    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=5.107;DP=99;DS;FS=15.953;HRun=0;HaplotypeScore=556.5766;IndelType=D;MQ=54.78;MQ0=1;MQRankSum=-5.119;QD=1.46;ReadPosRankSum=0.338;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390368    GT:AD:DP:GQ:PL    0/1:90,19:99:99:199,0,5701
7    142197429    .    G    A    156.48    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=1.928;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.13;MQ0=1;MQRankSum=-3.94;QD=4.74;ReadPosRankSum=-2.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    0/1:23,10:33:99:186,0,826
7    142197521    .    CGGTTTTCT    C    427.83    PASS    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=5.264;DP=99;FS=1.677;HRun=0;HaplotypeScore=778.9888;IndelType=D;MQ=55.49;MQ0=0;MQRankSum=-3.394;QD=4.24;ReadPosRankSum=-1.909;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    0/1:88,13:99:99:467,0,9008
7    142197606    .    T    C    1152.33    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.891;DP=214;Dels=0.0;FS=2.712;HRun=2;HaplotypeScore=0.8321;MQ=53.52;MQ0=1;MQRankSum=-9.781;QD=5.38;ReadPosRankSum=2.576;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    0/1:151,63:214:99:1182,0,4846
7    142197613    .    T    C    1192.94    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.131;DP=210;Dels=0.0;FS=0.566;HRun=0;HaplotypeScore=3.5966;MQ=53.63;MQ0=1;MQRankSum=-10.213;QD=5.68;ReadPosRankSum=1.114;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    0/1:148,62:210:99:1223,0,4893
7    142197692    .    A    G    32.41    QDFilter2    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=0.277;DP=127;Dels=0.0;FS=27.242;HRun=0;HaplotypeScore=1.5777;MQ=55.2;MQ0=0;MQRankSum=-7.471;QD=0.26;ReadPosRankSum=-0.634;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    0/1:104,23:127:62.40:62,0,3689
7    142197835    rs17280    C    T    1505.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.37;MQ0=0;QD=35.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1539,111,0
7    142197897    rs17279    C    T    392.69    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.639;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.59;MQ0=0;MQRankSum=-0.27;QD=11.9;ReadPosRankSum=-0.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    0/1:16,17:33:99:423,0,573
7    142197986    rs148941368    T    C    1849.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.24;MQ0=0;QD=30.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1882,141,0
7    142198062    rs17278    C    A    492.24    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.228;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=58.74;MQ0=0;MQRankSum=0.228;QD=13.3;ReadPosRankSum=-1.048;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=TRBV11-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471935    GT:AD:DP:GQ:PL    0/1:19,18:37:99:522,0,636
7    142198067    rs17277    A    G    383.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.697;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.622;QD=12.0;ReadPosRankSum=-1.263;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=TRBV11-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471935    GT:AD:DP:GQ:PL    0/1:16,16:32:99:414,0,560
7    142198080    rs17276    A    G    410.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.045;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.33;MQ0=0;MQRankSum=0.299;QD=14.65;ReadPosRankSum=-0.345;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=AC233282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506921    GT:AD:DP:GQ:PL    0/1:14,14:28:99:440,0,484
7    142206473    rs11764626    G    A    551.21    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=4.004;DB;DP=41;Dels=0.0;FS=1.777;HRun=0;HaplotypeScore=2.3113;MQ=60.0;MQ0=0;MQRankSum=1.604;QD=13.44;ReadPosRankSum=0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV10-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426318    GT:AD:DP:GQ:PL    0/1:20,21:41:99:581,0,564
7    142223797    rs361469    C    G    2666.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=54.25;MQ0=0;QD=28.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV11-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390367    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2699,205,0
7    142223942    .    A    G    148.46    QDFilter2    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.798;DP=115;Dels=0.0;FS=11.349;HRun=0;HaplotypeScore=0.9332;MQ=52.92;MQ0=0;MQRankSum=-8.034;QD=1.29;ReadPosRankSum=-5.478;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV11-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390367    GT:AD:DP:GQ:PL    0/1:86,29:115:99:178,0,3084
7    142231625    rs17249    C    A    1086.28    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.762;DB;DP=98;Dels=0.0;FS=0.94;HRun=0;HaplotypeScore=3.1872;MQ=59.29;MQ0=0;MQRankSum=0.163;QD=11.08;ReadPosRankSum=-1.704;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV10-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390364    GT:AD:DP:GQ:PL    0/1:55,42:98:99:1116,0,1843
7    142231701    rs17248    G    T    2632.98    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=7.092;DB;DP=161;Dels=0.0;FS=1.235;HRun=1;HaplotypeScore=4.7085;MQ=59.57;MQ0=0;MQRankSum=1.705;QD=16.25;ReadPosRankSum=-0.262;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV10-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390364    GT:AD:DP:GQ:PL    0/1:76,85:161:99:2663,0,2115
7    142232163    rs144354683    T    C    117.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.51;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV10-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390364    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:150,12,0
7    142247134    rs361363    T    C    2035.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.462;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.77;MQ0=0;MQRankSum=1.675;QD=32.82;ReadPosRankSum=-1.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2068,162,0
7    142247288    .    T    C    92.58    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.476;DP=70;Dels=0.0;FS=1.635;HRun=0;HaplotypeScore=0.0;MQ=54.96;MQ0=0;MQRankSum=-5.117;QD=1.32;ReadPosRankSum=-1.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    0/1:56,14:70:99:123,0,1954
7    142247347    rs361359    A    C    94.80    QDFilter2    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=70;Dels=0.0;FS=3.499;HRun=0;HaplotypeScore=4.6387;MQ=53.28;MQ0=0;MQRankSum=-5.993;QD=1.35;ReadPosRankSum=2.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    0/1:53,16:70:99:125,0,1810
7    142247348    .    T    C    85.22    QDFilter2    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.699;DP=69;Dels=0.0;FS=1.632;HRun=0;HaplotypeScore=4.5722;MQ=53.18;MQ0=0;MQRankSum=-5.963;QD=1.24;ReadPosRankSum=2.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    0/1:53,16:69:99:115,0,1828
7    142247380    .    T    A    103.54    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DP=51;Dels=0.0;FS=1.66;HRun=0;HaplotypeScore=0.0;MQ=54.81;MQ0=0;MQRankSum=-4.672;QD=2.03;ReadPosRankSum=-2.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    0/1:42,9:51:99:134,0,1426
7    142250938    rs361439    T    G    1710.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1743,138,0
7    142250988    rs361437    G    A    1593.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1626,120,0
7    142251132    rs361436    G    T    1148.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    1/1:0,34:34:87.29:1181,87,0
7    142251190    rs361435    G    C    260.69    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.69;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.279;QD=11.33;ReadPosRankSum=0.217;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    0/1:13,10:23:99:291,0,433
7    142251273    rs2734088    G    C    324.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV6-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390360    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:357,30,0
7    142326607    rs17260    C    T    789.57    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=0.602;DB;DP=49;Dels=0.0;FS=6.369;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.357;QD=16.11;ReadPosRankSum=1.495;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390393    GT:AD:DP:GQ:PL    0/1:19,29:49:99:820,0,580
7    142326909    rs76454382    C    G    5151.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7176;MQ=59.56;MQ0=0;QD=35.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390393    GT:AD:DP:GQ:PL    1/1:0,146:146:99:5151,379,0
7    142334567    rs115172946    T    C    2546.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.42;MQ0=0;QD=32.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV20-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390394    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2580,193,0
7    142334648    rs17210    A    T    1813.75    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.807;DB;DP=126;Dels=0.0;FS=2.255;HRun=0;HaplotypeScore=1.1567;MQ=59.82;MQ0=0;MQRankSum=0.607;QD=14.39;ReadPosRankSum=0.512;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV20-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390394    GT:AD:DP:GQ:PL    0/1:64,62:126:99:1844,0,1782
7    142364553    rs17254    G    A    728.71    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.612;DB;DP=50;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.563;QD=14.57;ReadPosRankSum=0.767;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV24-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390397    GT:AD:DP:GQ:PL    0/1:26,24:50:99:759,0,799
7    142378491    rs17240    G    T    63.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.57;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=Mt_tRNA_pseudogene;SNPEFF_GENE_NAME=AC231380.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479847    GT:AD:DP:GQ:PL    0/1:3,3:6:93.41:93,0,105
7    142378633    rs17243    G    A    497.33    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=26;Dels=0.0;FS=1.909;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=19.13;ReadPosRankSum=0.553;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=Mt_tRNA_pseudogene;SNPEFF_GENE_NAME=AC231380.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479847    GT:AD:DP:GQ:PL    0/1:10,16:26:99:527,0,300
7    142378708    rs361418    T    G    631.56    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.435;DB;DP=52;Dels=0.0;FS=1.646;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.195;QD=12.15;ReadPosRankSum=-0.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=Mt_tRNA_pseudogene;SNPEFF_GENE_NAME=AC231380.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479847    GT:AD:DP:GQ:PL    0/1:30,22:52:99:662,0,1014
7    142378831    rs76429157    C    G    4709.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.612;MQ=59.54;MQ0=0;QD=33.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=Mt_tRNA_pseudogene;SNPEFF_GENE_NAME=AC231380.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479847    GT:AD:DP:GQ:PL    1/1:0,142:142:99:4710,361,0
7    142379096    rs115675145    T    C    2337.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=Mt_tRNA_pseudogene;SNPEFF_GENE_NAME=AC231380.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479847    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2371,196,0
7    142379267    rs17245    C    G    110.07    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=22.01;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV25-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390398    GT:AD:DP:GQ:PL    0/1:1,4:5:27.96:140,0,28
7    142423161    rs112325538    A    G    51.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_pseudogene;SNPEFF_GENE_NAME=TRBVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477100    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
7    142423289    rs17251    C    A    153.54    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.768;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=1.236;QD=6.68;ReadPosRankSum=-1.971;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_pseudogene;SNPEFF_GENE_NAME=TRBVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477100    GT:AD:DP:GQ:PL    0/1:16,7:23:99:184,0,599
7    142423562    rs62001054    C    T    1259.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_pseudogene;SNPEFF_GENE_NAME=TRBVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477100    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1293,99,0
7    142428611    rs361326    C    T    440.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.84;MQ0=0;QD=33.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390399    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:473,36,0
7    142428626    rs361327    A    C    341.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390399    GT:AD:DP:GQ:PL    1/1:0,13:13:30.07:374,30,0
7    142429001    rs17213    C    T    307.66    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8279;MQ=60.0;MQ0=0;MQRankSum=0.317;QD=14.65;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390400    GT:AD:DP:GQ:PL    0/1:10,11:21:99:338,0,277
7    142429103    rs10282324    T    C    57.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390400    GT:AD:DP:GQ:PL    1/1:0,4:4:9:89,9,0
7    142429105    rs10251992    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390400    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
7    142457132    rs4726576    A    C    171.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
7    142458228    .    G    A    50.22    QDFilter2    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.29;MQ0=0;MQRankSum=-5.196;QD=1.36;ReadPosRankSum=-0.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:20,17:37:80.22:80,0,724
7    142458250    .    G    T    129.46    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.59;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4088;MQ=45.47;MQ0=0;MQRankSum=-6.01;QD=2.64;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:25,24:49:99:159,0,827
7    142458251    .    G    C    104.73    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=3.602;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4088;MQ=45.2;MQ0=0;MQRankSum=-6.068;QD=2.09;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:26,24:50:99:135,0,942
7    142458270    .    G    C    53.87    QDFilter2    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=1.962;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7853;MQ=46.55;MQ0=0;MQRankSum=-6.182;QD=0.8;ReadPosRankSum=1.756;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:41,26:67:83.86:84,0,1401
7    142458284    .    T    C    56.21    HaplotypeScoreFilter13;QDFilter2    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.633;DP=94;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=19.2036;MQ=45.84;MQ0=0;MQRankSum=-8.272;QD=0.6;ReadPosRankSum=0.923;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:51,43:94:86.20:86,0,1814
7    142458331    .    A    G    142.99    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=2.093;DP=159;Dels=0.0;FS=15.902;HRun=1;HaplotypeScore=21.5474;MQ=48.13;MQ0=2;MQRankSum=-10.462;QD=0.9;ReadPosRankSum=-2.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:98,61:159:99:173,0,3468
7    142458337    .    A    G    41.74    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.185;DP=174;Dels=0.0;FS=37.952;HRun=0;HaplotypeScore=20.5491;MQ=48.07;MQ0=3;MQRankSum=-9.176;QD=0.24;ReadPosRankSum=-3.782;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:116,58:174:71.74:72,0,3794
7    142458338    .    T    C    168.58    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=2.541;DP=183;Dels=0.0;FS=24.676;HRun=1;HaplotypeScore=20.5491;MQ=48.29;MQ0=3;MQRankSum=-10.859;QD=0.92;ReadPosRankSum=-3.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:110,72:183:99:199,0,3638
7    142458371    .    T    C    576.97    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.35;DP=246;DS;Dels=0.0;FS=6.531;HRun=0;HaplotypeScore=5.6409;MQ=49.47;MQ0=9;MQRankSum=-11.807;QD=2.35;ReadPosRankSum=0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:157,89:246:99:607,0,4915
7    142458437    rs151065614    C    T    251.56    QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=4.195;DB;DP=232;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.1979;MQ=48.43;MQ0=10;MQRankSum=-4.806;QD=1.08;ReadPosRankSum=1.811;SNPEFF_AMINO_ACID_CHANGE=I24;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142458406_142458565;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:202,30:232:99:282,0,4636
7    142458511    rs138464021    G    T    42.78    QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.611;DB;DP=147;DS;Dels=0.0;FS=4.737;HRun=1;HaplotypeScore=5.2324;MQ=54.6;MQ0=8;MQRankSum=-6.109;QD=0.29;ReadPosRankSum=-2.759;SNPEFF_AMINO_ACID_CHANGE=G49V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142458406_142458565;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311737    GT:AD:DP:GQ:PL    0/1:129,18:147:72.77:73,0,4155
7    142459573    .    A    G    125.31    HaplotypeScoreFilter13;QDFilter2    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.733;DP=89;Dels=0.0;FS=4.232;HRun=2;HaplotypeScore=20.7901;MQ=51.45;MQ0=2;MQRankSum=-6.957;QD=1.41;ReadPosRankSum=-2.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497041    GT:AD:DP:GQ:PL    0/1:64,25:89:99:155,0,2110
7    142459578    .    C    T    89.24    HaplotypeScoreFilter13;QDFilter2    AB=0.865;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.365;DP=104;Dels=0.0;FS=3.715;HRun=0;HaplotypeScore=20.7901;MQ=50.77;MQ0=2;MQRankSum=-4.074;QD=0.86;ReadPosRankSum=-2.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497041    GT:AD:DP:GQ:PL    0/1:90,14:104:99:119,0,2487
7    142459626    rs145867820    C    T    88.27    QDFilter2    AB=0.893;AC=1;AF=0.50;AN=2;BaseQRankSum=1.935;DB;DP=197;Dels=0.0;FS=4.477;HRun=0;HaplotypeScore=4.0872;MQ=49.22;MQ0=4;MQRankSum=-4.732;QD=0.45;ReadPosRankSum=3.896;SNPEFF_AMINO_ACID_CHANGE=R18C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142459625_142459878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000492062    GT:AD:DP:GQ:PL    0/1:176,21:197:99:118,0,4682
7    142460005    .    A    G    63.74    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DP=15;Dels=0.0;FS=5.74;HRun=1;HaplotypeScore=0.0;MQ=53.76;MQ0=0;MQRankSum=-2.938;QD=4.25;ReadPosRankSum=-0.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:11,4:15:93.74:94,0,395
7    142460052    .    C    T    43.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DP=12;Dels=0.0;FS=6.264;HRun=1;HaplotypeScore=1.9966;MQ=49.5;MQ0=0;MQRankSum=-1.599;QD=3.65;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:8,4:12:73.77:74,0,283
7    142460063    .    G    A    195.28    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DP=17;Dels=0.0;FS=15.315;HRun=2;HaplotypeScore=0.0;MQ=51.25;MQ0=0;MQRankSum=-2.454;QD=11.49;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:8,9:17:99:225,0,276
7    142460087    .    A    C    356.03    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=1.104;DP=25;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=3.9098;MQ=46.51;MQ0=0;MQRankSum=-3.482;QD=14.24;ReadPosRankSum=-0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:9,16:25:99:386,0,296
7    142460107    .    G    A    450.94    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.802;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.7672;MQ=45.46;MQ0=1;MQRankSum=-4.011;QD=12.53;ReadPosRankSum=-0.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:13,23:36:99:481,0,422
7    142460148    .    T    C    627.27    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.08;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9148;MQ=48.82;MQ0=1;MQRankSum=-5.877;QD=7.94;ReadPosRankSum=1.939;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:43,36:79:99:657,0,1566
7    142460167    .    C    T    808.82    HaplotypeScoreFilter13    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.933;DP=102;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=22.605;MQ=48.86;MQ0=1;MQRankSum=-7.977;QD=7.93;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:58,44:102:99:839,0,2104
7    142460170    .    G    A    290.79    HaplotypeScoreFilter13    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=19.8712;MQ=48.91;MQ0=1;MQRankSum=-3.299;QD=2.72;ReadPosRankSum=-0.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:87,20:107:99:321,0,2605
7    142460187    .    T    A    1154.83    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.522;DP=138;Dels=0.0;FS=5.524;HRun=0;HaplotypeScore=0.9983;MQ=49.24;MQ0=1;MQRankSum=-9.474;QD=8.37;ReadPosRankSum=-1.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:80,58:138:99:1185,0,2788
7    142460200    .    A    G    373.24    HaplotypeScoreFilter13;SnpCluster    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.012;DP=178;Dels=0.0;FS=4.49;HRun=1;HaplotypeScore=87.3506;MQ=49.49;MQ0=1;MQRankSum=-5.968;QD=2.1;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:148,30:178:99:403,0,4548
7    142460201    .    G    A    71.09    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=4.443;DP=178;Dels=0.0;FS=6.751;HRun=1;HaplotypeScore=89.3436;MQ=50.03;MQ0=1;MQRankSum=-8.086;QD=0.4;ReadPosRankSum=0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:140,38:178:99:101,0,4584
7    142460203    .    T    G    918.25    HaplotypeScoreFilter13;SnpCluster    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.252;DP=180;Dels=0.0;FS=20.567;HRun=0;HaplotypeScore=89.3576;MQ=50.23;MQ0=0;MQRankSum=-11.073;QD=5.1;ReadPosRankSum=0.808;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:113,67:180:99:948,0,3836
7    142460207    .    C    T    412.72    HaplotypeScoreFilter13;SnpCluster    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=1.329;DP=190;Dels=0.0;FS=6.531;HRun=0;HaplotypeScore=124.1735;MQ=49.34;MQ0=0;MQRankSum=-7.053;QD=2.16;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:156,33:190:99:443,0,4867
7    142460212    .    A    T    1324.73    HaplotypeScoreFilter13;SnpCluster    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.986;DP=209;Dels=0.0;FS=31.087;HRun=0;HaplotypeScore=66.7175;MQ=50.66;MQ0=0;MQRankSum=-11.967;QD=6.34;ReadPosRankSum=0.815;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:133,76:209:99:1355,0,4421
7    142460216    .    T    C    388.96    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DP=223;Dels=0.0;FS=17.914;HRun=0;HaplotypeScore=68.7141;MQ=50.44;MQ0=0;MQRankSum=-8.845;QD=1.74;ReadPosRankSum=0.661;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:176,47:223:99:419,0,5617
7    142460226    .    C    T    1480.87    HaplotypeScoreFilter13;MQRankSumFilter12_5    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.314;DP=245;Dels=0.0;FS=49.665;HRun=2;HaplotypeScore=30.8567;MQ=50.47;MQ0=0;MQRankSum=-12.997;QD=6.02;ReadPosRankSum=-1.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:154,91:245:99:1511,0,5093
7    142460238    .    G    A    1585.40    MQRankSumFilter12_5    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.56;DP=250;DS;Dels=0.0;FS=17.798;HRun=1;HaplotypeScore=4.74;MQ=50.65;MQ0=0;MQRankSum=-12.61;QD=6.34;ReadPosRankSum=-3.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:158,92:250:99:1615,0,5125
7    142460248    .    TCTA    T    2623.24    PASS    AB=0.977;AC=1;AF=0.50;AN=2;BaseQRankSum=11.459;DP=247;DS;FS=12.321;HRun=0;HaplotypeScore=3364.7698;IndelType=D;MQ=50.76;MQ0=0;MQRankSum=-11.544;QD=10.49;ReadPosRankSum=-1.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:244,6:247:99:2662,0,9760
7    142460250    .    TAC    T    2607.10    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=11.589;DP=232;DS;FS=12.3;HRun=0;HaplotypeScore=2812.5723;IndelType=D;MQ=52.06;MQ0=0;MQRankSum=-11.622;QD=11.09;ReadPosRankSum=-1.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:165,70:232:99:2646,0,8794
7    142460254    .    TC    T    2087.12    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=10.807;DP=246;DS;FS=12.227;HRun=2;HaplotypeScore=2908.5433;IndelType=D;MQ=51.4;MQ0=1;MQRankSum=-11.547;QD=8.35;ReadPosRankSum=-1.612;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:183,67:246:99:2126,0,6254
7    142460261    .    T    A    4951.99    HaplotypeScoreFilter13    AB=0.376;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DP=250;DS;Dels=0.0;FS=1.952;HRun=0;HaplotypeScore=121.5007;MQ=50.7;MQ0=1;MQRankSum=12.325;QD=19.81;ReadPosRankSum=7.982;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:94,156:250:99:4952,0,1812
7    142460313    rs6666    T    C    3778.84    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.162;DB;DP=244;DS;Dels=0.0;FS=2.242;HRun=0;HaplotypeScore=2.8254;MQ=49.06;MQ0=1;MQRankSum=12.738;QD=15.49;ReadPosRankSum=-2.022;SNPEFF_AMINO_ACID_CHANGE=D112;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142460282_142460401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000492062    GT:AD:DP:GQ:PL    0/1:112,132:244:99:3779,0,2896
7    142460335    .    A    G    2987.11    HaplotypeScoreFilter13    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.996;DP=250;DS;Dels=0.0;FS=2.904;HRun=0;HaplotypeScore=37.1343;MQ=49.04;MQ0=1;MQRankSum=-12.43;QD=11.95;ReadPosRankSum=3.884;SNPEFF_AMINO_ACID_CHANGE=K120E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142460282_142460401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000492062    GT:AD:DP:GQ:PL    0/1:135,115:250:99:3017,0,4378
7    142460339    .    G    A    309.21    HaplotypeScoreFilter13;QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=35.1429;MQ=48.94;MQ0=1;MQRankSum=-5.595;QD=1.25;ReadPosRankSum=-2.05;SNPEFF_AMINO_ACID_CHANGE=C121Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142460282_142460401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000492062    GT:AD:DP:GQ:PL    0/1:217,31:248:99:339,0,6910
7    142460369    .    G    A    1919.96    HaplotypeScoreFilter13    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.944;DP=246;DS;Dels=0.0;FS=3.949;HRun=1;HaplotypeScore=36.4117;MQ=49.61;MQ0=1;MQRankSum=-12.45;QD=7.8;ReadPosRankSum=-1.633;SNPEFF_AMINO_ACID_CHANGE=S131N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142460282_142460401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000492062    GT:AD:DP:GQ:PL    0/1:144,102:246:99:1950,0,4712
7    142460394    .    T    C    667.21    HaplotypeScoreFilter13    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.314;DP=234;DS;Dels=0.0;FS=11.939;HRun=0;HaplotypeScore=30.9785;MQ=51.12;MQ0=1;MQRankSum=-8.002;QD=2.85;ReadPosRankSum=-4.602;SNPEFF_AMINO_ACID_CHANGE=L139;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142460282_142460401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000492062    GT:AD:DP:GQ:PL    0/1:179,54:234:99:697,0,5126
7    142460412    .    A    C    97.32    QDFilter2    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.489;DP=213;DS;Dels=0.0;FS=18.753;HRun=1;HaplotypeScore=5.1079;MQ=51.94;MQ0=1;MQRankSum=-11.15;QD=0.46;ReadPosRankSum=-2.205;SNPEFF_AMINO_ACID_CHANGE=S185;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142460282_142460418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529243    GT:AD:DP:GQ:PL    0/1:149,64:213:99:127,0,5125
7    142460428    .    CCAA    C    1848.62    PASS    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=10.125;DP=189;DS;FS=39.162;HRun=0;HaplotypeScore=1772.4727;IndelType=D;MQ=52.24;MQ0=1;MQRankSum=-10.051;QD=9.38;ReadPosRankSum=2.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:142,55:189:99:1888,0,9073
7    142460482    .    G    T    329.32    HaplotypeScoreFilter13    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.437;DP=133;Dels=0.0;FS=7.051;HRun=0;HaplotypeScore=13.7771;MQ=52.43;MQ0=0;MQRankSum=-8.655;QD=2.46;ReadPosRankSum=-0.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:94,35:133:99:359,0,3347
7    142460503    .    T    C    133.67    QDFilter2    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.074;DP=97;Dels=0.0;FS=2.403;HRun=0;HaplotypeScore=11.4377;MQ=52.77;MQ0=0;MQRankSum=-6.851;QD=1.38;ReadPosRankSum=0.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:73,24:97:99:164,0,2527
7    142460531    .    CA    C    329.14    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=5.459;DP=60;FS=2.436;HRun=1;HaplotypeScore=443.5136;IndelType=D;MQ=53.93;MQ0=0;MQRankSum=-5.477;QD=5.4;ReadPosRankSum=0.302;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:47,14:60:99:368,0,2017
7    142460569    .    T    C    48.82    QDFilter2    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DP=39;Dels=0.0;FS=8.116;HRun=1;HaplotypeScore=5.4612;MQ=50.87;MQ0=4;MQRankSum=-4.243;QD=1.25;ReadPosRankSum=-0.629;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:26,12:39:78.82:79,0,974
7    142460603    .    A    G    70.05    QDFilter2    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=2.702;DP=47;Dels=0.0;FS=31.936;HRun=0;HaplotypeScore=5.7266;MQ=52.53;MQ0=4;MQRankSum=-4.583;QD=1.49;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485223    GT:AD:DP:GQ:PL    0/1:34,13:47:99:100,0,1252
7    142460865    rs6667    T    C    3145.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.49;MQ0=0;QD=34.95;SNPEFF_AMINO_ACID_CHANGE=N236;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142460719_142460871;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529243    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3179,235,0
7    142471475    .    C    T    177.63    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DP=52;Dels=0.0;FS=5.55;HRun=2;HaplotypeScore=0.9578;MQ=49.77;MQ0=4;MQRankSum=-4.707;QD=3.42;ReadPosRankSum=-0.261;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:34,18:52:99:208,0,1152
7    142471542    .    A    C    36.07    QDFilter2    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=51.74;MQ0=0;MQRankSum=-4.796;QD=0.88;ReadPosRankSum=-0.901;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:30,11:41:66.06:66,0,1005
7    142471588    .    C    G    79.18    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DP=80;Dels=0.0;FS=2.32;HRun=1;HaplotypeScore=13.4171;MQ=46.18;MQ0=0;MQRankSum=-6.119;QD=0.99;ReadPosRankSum=1.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:53,27:80:99:109,0,1589
7    142471590    .    A    G    67.65    QDFilter2;SnpCluster    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.25;DP=80;Dels=0.0;FS=2.332;HRun=0;HaplotypeScore=8.6309;MQ=46.18;MQ0=0;MQRankSum=-6.109;QD=0.85;ReadPosRankSum=1.789;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:53,27:80:97.65:98,0,1586
7    142471596    .    T    C    181.40    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.193;DP=91;Dels=0.0;FS=12.519;HRun=1;HaplotypeScore=16.3336;MQ=45.68;MQ0=0;MQRankSum=-8.076;QD=1.97;ReadPosRankSum=0.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:48,43:91:99:211,0,1579
7    142471602    .    T    C    142.87    QDFilter2;SnpCluster    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.379;DP=98;Dels=0.0;FS=12.636;HRun=1;HaplotypeScore=0.734;MQ=46.0;MQ0=0;MQRankSum=-8.35;QD=1.46;ReadPosRankSum=1.224;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:53,45:98:99:173,0,1698
7    142471603    .    T    A    144.79    QDFilter2;SnpCluster    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DP=98;Dels=0.0;FS=12.678;HRun=0;HaplotypeScore=0.734;MQ=46.0;MQ0=0;MQRankSum=-8.394;QD=1.48;ReadPosRankSum=1.298;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:53,45:98:99:175,0,1667
7    142471620    .    G    A    209.95    HaplotypeScoreFilter13;QDFilter2    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DP=110;Dels=0.0;FS=15.057;HRun=1;HaplotypeScore=15.4825;MQ=46.55;MQ0=0;MQRankSum=-8.985;QD=1.91;ReadPosRankSum=2.279;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:61,49:110:99:240,0,2011
7    142471633    .    T    C    34.96    HaplotypeScoreFilter13;QDFilter2    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=4.327;DP=121;Dels=0.0;FS=5.484;HRun=1;HaplotypeScore=16.0954;MQ=46.32;MQ0=0;MQRankSum=-7.37;QD=0.29;ReadPosRankSum=-1.184;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:80,41:121:64.95:65,0,2341
7    142471647    .    C    T    199    QDFilter2    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.923;DP=133;Dels=0.0;FS=2.926;HRun=1;HaplotypeScore=3.1438;MQ=47.18;MQ0=0;MQRankSum=-6.997;QD=1.5;ReadPosRankSum=-1.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:90,43:133:99:229,0,2674
7    142471667    .    G    C    193.14    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.799;DP=135;Dels=0.0;FS=2.967;HRun=1;HaplotypeScore=47.9734;MQ=47.2;MQ0=0;MQRankSum=-7.633;QD=1.43;ReadPosRankSum=-1.005;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:93,42:135:99:223,0,2882
7    142471671    .    C    T    479.43    HaplotypeScoreFilter13;SnpCluster    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DP=136;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=34.2408;MQ=47.74;MQ0=0;MQRankSum=-9.101;QD=3.53;ReadPosRankSum=-2.873;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:76,60:136:99:509,0,2456
7    142471675    .    C    G    258.33    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.641;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=39.136;MQ=46.92;MQ0=0;MQRankSum=-7.58;QD=1.75;ReadPosRankSum=-0.576;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:100,48:148:99:288,0,2981
7    142471687    .    G    A    1115.26    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=3.231;DP=155;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.8982;MQ=47.45;MQ0=0;MQRankSum=-9.533;QD=7.2;ReadPosRankSum=-2.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:78,77:155:99:1145,0,2266
7    142471709    .    GT    G    661.04    PASS    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=5.712;DP=161;FS=3.949;HRun=1;HaplotypeScore=1035.9106;IndelType=D;MQ=46.18;MQ0=0;MQRankSum=-5.33;QD=3.41;ReadPosRankSum=1.327;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:158,36:161:99:700,0,5722
7    142471719    .    G    A    425.06    PASS    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.193;DP=211;Dels=0.0;FS=2.686;HRun=2;HaplotypeScore=3.1657;MQ=46.21;MQ0=2;MQRankSum=-4.951;QD=2.01;ReadPosRankSum=4.735;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:175,36:211:99:455,0,4336
7    142471799    .    T    C    309.03    HaplotypeScoreFilter13    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DP=153;Dels=0.0;FS=21.006;HRun=2;HaplotypeScore=19.5448;MQ=50.95;MQ0=7;MQRankSum=-7.321;QD=2.02;ReadPosRankSum=-0.805;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:96,57:153:99:339,0,3023
7    142471805    .    A    C    344.88    HaplotypeScoreFilter13    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=5.497;DP=142;Dels=0.0;FS=21.62;HRun=2;HaplotypeScore=17.9672;MQ=51.05;MQ0=7;MQRankSum=-7.269;QD=2.43;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:87,55:142:99:375,0,2583
7    142471837    .    T    C    382.34    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.288;DP=88;Dels=0.0;FS=13.441;HRun=2;HaplotypeScore=9.65;MQ=50.21;MQ0=5;MQRankSum=-5.805;QD=4.34;ReadPosRankSum=0.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:51,37:88:99:412,0,1732
7    142471842    .    T    C    373.76    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.011;DP=88;Dels=0.0;FS=10.534;HRun=0;HaplotypeScore=8.9849;MQ=50.53;MQ0=4;MQRankSum=-6.222;QD=4.25;ReadPosRankSum=0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:52,36:88:99:404,0,1770
7    142471869    .    C    T    31.86    QDFilter2    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=0.786;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9832;MQ=50.57;MQ0=0;MQRankSum=-5.657;QD=0.66;ReadPosRankSum=-1.605;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:31,17:48:61.85:62,0,1084
7    142471877    .    G    C    30.25    QDFilter2    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.33;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.8366;MQ=50.11;MQ0=0;MQRankSum=-5.477;QD=0.69;ReadPosRankSum=-2.013;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:28,16:44:60.24:60,0,1043
7    142471914    .    C    A    40.07    QDFilter2    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=49.81;MQ0=0;MQRankSum=-3.856;QD=1.82;ReadPosRankSum=1.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503996    GT:AD:DP:GQ:PL    0/1:14,8:22:70.07:70,0,466
7    142478755    rs73742441    T    C    768.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.3;MQ0=0;QD=36.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361585    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:801,63,0
7    142478771    rs149976795    A    AC    1376.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=1;HaplotypeScore=147.5474;IndelType=I;MQ=57.72;MQ0=0;QD=43.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,32:32:96.32:1419,96,0
7    142478897    rs73742442    T    C    2192.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=29.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2225,172,0
7    142478986    rs73742443    A    G    725.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:759,57,0
7    142479678    rs59211372    C    T    347.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.23;MQ0=0;QD=24.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,14:14:33.06:381,33,0
7    142479729    .    G    C    35.44    QDFilter2    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.98;MQ0=2;MQRankSum=-3.977;QD=1.11;ReadPosRankSum=-1.049;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:22,10:32:65.43:65,0,778
7    142479737    .    A    G    59.85    QDFilter2    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.227;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=49.22;MQ0=2;MQRankSum=-4.191;QD=1.71;ReadPosRankSum=-0.545;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:24,11:35:89.84:90,0,859
7    142479742    .    G    T    41.82    QDFilter2    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=4.464;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=50.4;MQ0=2;MQRankSum=-4.395;QD=1.0;ReadPosRankSum=0.652;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:31,11:42:71.81:72,0,916
7    142479749    .    T    C    137    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.736;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=48.85;MQ0=2;MQRankSum=-5.288;QD=2.8;ReadPosRankSum=-0.322;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:33,16:49:99:167,0,1031
7    142479767    .    A    AC    290.42    PASS    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=4.492;DP=55;FS=0.0;HRun=1;HaplotypeScore=503.8826;IndelType=I;MQ=50.6;MQ0=2;MQRankSum=-4.955;QD=4.68;ReadPosRankSum=0.936;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:45,17:55:99:329,0,1535
7    142479788    .    C    CA    360.27    PASS    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=3.742;DP=75;FS=0.0;HRun=0;HaplotypeScore=845.4595;IndelType=I;MQ=49.43;MQ0=2;MQRankSum=-5.241;QD=4.29;ReadPosRankSum=0.411;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:67,17:75:99:399,0,2272
7    142479807    .    T    A    52.55    HaplotypeScoreFilter13;QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=2.787;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=24.0195;MQ=48.99;MQ0=1;MQRankSum=-4.965;QD=0.45;ReadPosRankSum=-1.468;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:100,18:118:82.55:83,0,3120
7    142479816    .    AG    A    381.89    PASS    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=4.607;DP=109;FS=18.734;HRun=2;HaplotypeScore=1342.325;IndelType=D;MQ=47.88;MQ0=2;MQRankSum=-3.864;QD=3.1;ReadPosRankSum=0.412;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:96,27:109:99:421,0,3526
7    142479819    .    A    T    179.27    HaplotypeScoreFilter13;QDFilter2    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.698;DP=123;Dels=0.0;FS=4.398;HRun=3;HaplotypeScore=24.1193;MQ=48.44;MQ0=2;MQRankSum=-7.964;QD=1.46;ReadPosRankSum=-1.673;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:74,49:123:99:209,0,2611
7    142479827    rs56310545    C    T    4003.60    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=23.1528;MQ=47.9;MQ0=2;QD=29.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:1,133:134:99:4004,322,0
7    142479841    .    A    C    580.53    HaplotypeScoreFilter13    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DP=163;Dels=0.0;FS=6.612;HRun=1;HaplotypeScore=54.6249;MQ=48.08;MQ0=2;MQRankSum=-8.995;QD=3.56;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:96,67:163:99:611,0,3162
7    142479855    .    T    A    894.13    HaplotypeScoreFilter13    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=4.686;DP=203;Dels=0.0;FS=18.394;HRun=0;HaplotypeScore=36.7367;MQ=47.21;MQ0=3;MQRankSum=-7.417;QD=4.4;ReadPosRankSum=-0.868;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:116,51:203:99:924,0,3429
7    142479912    .    C    G    738.23    HaplotypeScoreFilter13;SnpCluster    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.128;DP=244;DS;Dels=0.0;FS=11.33;HRun=1;HaplotypeScore=30.1225;MQ=47.81;MQ0=5;MQRankSum=-8.238;QD=3.03;ReadPosRankSum=0.372;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:187,57:244:99:768,0,5388
7    142479915    .    T    C    109.47    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=3.712;DP=250;DS;Dels=0.0;FS=56.409;HRun=4;HaplotypeScore=29.4574;MQ=47.97;MQ0=7;MQRankSum=-4.764;QD=0.44;ReadPosRankSum=1.167;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:214,36:250:99:139,0,5950
7    142479917    .    C    T    685.01    HaplotypeScoreFilter13;SnpCluster    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.485;DP=250;DS;Dels=0.0;FS=9.042;HRun=0;HaplotypeScore=28.5105;MQ=47.72;MQ0=5;MQRankSum=-7.703;QD=2.74;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:194,56:250:99:715,0,5638
7    142479940    rs58649169    C    T    4979.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.209;DB;DP=244;DS;Dels=0.0;FS=11.26;HRun=1;HaplotypeScore=2.3913;MQ=46.85;MQ0=5;MQRankSum=7.158;QD=20.41;ReadPosRankSum=2.646;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:61,183:244:99:4979,0,791
7    142479954    .    C    T    1150.57    HaplotypeScoreFilter13    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.309;DP=238;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=23.107;MQ=46.86;MQ0=5;MQRankSum=-9.503;QD=4.83;ReadPosRankSum=-0.798;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:139,76:238:99:1181,0,4206
7    142480002    .    C    A    2159.36    HaplotypeScoreFilter13    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.935;DP=243;DS;Dels=0.0;FS=0.644;HRun=0;HaplotypeScore=25.0735;MQ=44.44;MQ0=3;MQRankSum=-9.993;QD=8.85;ReadPosRankSum=0.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:127,116:243:99:2189,0,3488
7    142480012    rs56146961    C    T    3468.79    HaplotypeScoreFilter13    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=6.02;DB;DP=248;DS;Dels=0.0;FS=3.4;HRun=0;HaplotypeScore=49.1996;MQ=43.67;MQ0=4;MQRankSum=6.568;QD=13.99;ReadPosRankSum=-0.295;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:96,147:248:99:3469,0,1889
7    142480034    rs10808019    C    A    2758.29    HaplotypeScoreFilter13    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.361;DB;DP=215;DS;Dels=0.0;FS=0.722;HRun=2;HaplotypeScore=67.4198;MQ=43.74;MQ0=4;MQRankSum=7.308;QD=12.77;ReadPosRankSum=1.359;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:81,115:215:99:2788,0,1879
7    142480067    .    C    T    484.04    HaplotypeScoreFilter13;MQFilter40    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.173;DP=116;DS;Dels=0.0;FS=2.423;HRun=0;HaplotypeScore=29.29;MQ=39.06;MQ0=4;MQRankSum=-3.813;QD=4.17;ReadPosRankSum=-2.055;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:71,45:116:99:514,0,1551
7    142480079    .    T    G    178.48    MQFilter40;QDFilter2    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=3.757;DP=102;DS;Dels=0.0;FS=9.657;HRun=2;HaplotypeScore=3.9489;MQ=39.83;MQ0=5;MQRankSum=-4.602;QD=1.75;ReadPosRankSum=1.745;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:69,33:102:99:208,0,1442
7    142480083    .    A    C    163.13    MQFilter40;QDFilter2    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=3.24;DP=93;DS;Dels=0.0;FS=7.158;HRun=2;HaplotypeScore=0.9983;MQ=39.29;MQ0=5;MQRankSum=-4.934;QD=1.75;ReadPosRankSum=2.219;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:64,29:93:99:193,0,1249
7    142480095    .    G    A    175.59    MQFilter40    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.014;DP=86;DS;Dels=0.0;FS=7.325;HRun=3;HaplotypeScore=0.9789;MQ=38.47;MQ0=5;MQRankSum=-4.318;QD=2.04;ReadPosRankSum=2.803;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:56,30:86:99:206,0,1151
7    142480126    .    C    A    138.54    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=2.188;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.86;MQ0=2;MQRankSum=-4.241;QD=2.72;ReadPosRankSum=0.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:32,19:51:99:169,0,729
7    142480137    rs57353422    A    G    792.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.26;MQ0=2;QD=20.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,38:38:66.18:826,66,0
7    142480141    rs55775033    C    G    745    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.29;MQ0=2;QD=21.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,35:35:60.18:778,60,0
7    142480148    rs10808021    G    C    441.06    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.382;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.17;MQ0=2;MQRankSum=3.235;QD=14.23;ReadPosRankSum=0.161;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:12,19:31:84.38:471,0,84
7    142480157    .    A    G    48.69    QDFilter2    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.86;MQ0=2;MQRankSum=-3.791;QD=1.62;ReadPosRankSum=-0.879;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:19,11:30:78.69:79,0,597
7    142480160    .    T    C    41.67    QDFilter2    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.476;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.86;MQ0=2;MQRankSum=-3.86;QD=1.39;ReadPosRankSum=-0.791;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    0/1:19,11:30:71.66:72,0,591
7    142480253    rs58128863    A    G    68.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.09;MQ0=0;QD=22.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
7    142480861    rs56094006    T    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
7    142480939    rs73742451    A    G    37.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=7.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:69,6,0
7    142480954    rs55796822    T    G    220.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:254,21,0
7    142480975    rs60043638    C    A    482.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:516,39,0
7    142481007    rs73742452    A    G    868.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,27:27:78.21:902,78,0
7    142481234    rs57725689    T    C    7956.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=227;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1623;MQ=59.53;MQ0=0;QD=35.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,227:227:99:7956,587,0
7    142481376    rs73740310    T    A    3519.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.095;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.13;MQ0=0;MQRankSum=2.927;QD=36.66;ReadPosRankSum=1.769;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:3,93:96:99:3520,259,0
7    142481590    rs58854468    C    T    542.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=U66061.42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460451    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:576,42,0
7    142481807    rs4726591    C    T    8388.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=240;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8662;MQ=59.81;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=U66061.42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460451    GT:AD:DP:GQ:PL    1/1:0,240:240:99:8389,608,0
7    142481867    rs59320698    C    G    7131.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.143;DB;DP=197;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9468;MQ=59.47;MQ0=0;MQRankSum=2.425;QD=36.2;ReadPosRankSum=-0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=U66061.42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460451    GT:AD:DP:GQ:PL    1/1:2,195:197:99:7132,524,0
7    142482184    rs73740312    A    C    2534.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=U66061.42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460451    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2568,199,0
7    142482556    rs73740313    T    C    291.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=29.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:324,27,0
7    142482597    rs73740314    A    G    168.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=U66061.39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290968    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
7    142494606    rs2071361    C    G    218.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:252,21,0
7    142495126    rs12532977    G    A    373.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=23.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    1/1:0,16:16:42.02:406,42,0
7    142495127    rs56111168    G    T    339.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=21.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    1/1:0,16:16:39.01:372,39,0
7    142495308    rs56352733    G    A    108.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:141,12,0
7    142498635    .    C    CAG    185.16    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=3.383;DP=28;FS=0.0;HRun=0;HaplotypeScore=314.7281;IndelType=I;MQ=54.84;MQ0=0;MQRankSum=-3.448;QD=6.61;ReadPosRankSum=1.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:23,5:28:99:224,0,926
7    142498638    .    CCT    C    118.93    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=3.419;DP=28;FS=0.0;HRun=0;HaplotypeScore=320.7496;IndelType=D;MQ=54.84;MQ0=0;MQRankSum=-3.479;QD=4.25;ReadPosRankSum=1.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:23,5:28:99:158,0,1298
7    142498652    .    CAT    C    304.84    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=4.485;DP=34;FS=2.669;HRun=0;HaplotypeScore=498.722;IndelType=D;MQ=52.41;MQ0=0;MQRankSum=-4.446;QD=8.97;ReadPosRankSum=-0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:24,10:34:99:344,0,1195
7    142498673    .    G    A    117.96    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.578;DP=42;Dels=0.0;FS=8.215;HRun=1;HaplotypeScore=0.9159;MQ=52.08;MQ0=0;MQRankSum=-5.088;QD=2.81;ReadPosRankSum=-1.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:29,13:42:99:148,0,893
7    142498687    rs1799887    T    C    788.71    PASS    AB=0.327;AC=1;AF=0.50;AN=2;BaseQRankSum=2.335;DB;DP=49;Dels=0.0;FS=5.341;HRun=0;HaplotypeScore=2.6267;MQ=52.75;MQ0=0;MQRankSum=-1.759;QD=16.1;ReadPosRankSum=0.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:16,33:49:99:819,0,458
7    142498699    .    A    G    247.68    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DP=51;Dels=0.02;FS=22.908;HRun=1;HaplotypeScore=3.5932;MQ=52.29;MQ0=0;MQRankSum=-5.626;QD=4.76;ReadPosRankSum=-0.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:35,16:51:99:278,0,1144
7    142498702    .    C    T    232.95    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DP=53;Dels=0.0;FS=26.142;HRun=0;HaplotypeScore=4.3272;MQ=52.45;MQ0=0;MQRankSum=-5.68;QD=4.4;ReadPosRankSum=-0.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:37,16:53:99:263,0,1230
7    142498735    .    A    C    377.26    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.697;DP=58;Dels=0.0;FS=3.991;HRun=0;HaplotypeScore=0.8941;MQ=51.94;MQ0=0;MQRankSum=-5.45;QD=6.5;ReadPosRankSum=-1.828;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:36,22:58:99:407,0,1134
7    142498738    .    C    G    419.11    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.432;DP=57;Dels=0.0;FS=2.449;HRun=1;HaplotypeScore=0.8941;MQ=51.32;MQ0=0;MQRankSum=-5.479;QD=7.35;ReadPosRankSum=-2.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:34,23:57:99:449,0,996
7    142498813    rs1042955    G    A    688.72    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.829;DB;DP=71;Dels=0.0;FS=3.425;HRun=0;HaplotypeScore=0.0;MQ=54.28;MQ0=0;MQRankSum=2.727;QD=9.7;ReadPosRankSum=-0.567;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:45,26:71:99:719,0,1358
7    142498833    rs1042956    A    T    606.54    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.453;DB;DP=78;Dels=0.0;FS=3.272;HRun=1;HaplotypeScore=1.3123;MQ=54.5;MQ0=0;MQRankSum=-3.842;QD=7.78;ReadPosRankSum=-1.351;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:48,30:78:99:637,0,1390
7    142498837    rs1042957    C    T    598.40    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.258;DB;DP=78;Dels=0.0;FS=2.065;HRun=0;HaplotypeScore=1.3123;MQ=54.76;MQ0=0;MQRankSum=-3.571;QD=7.67;ReadPosRankSum=-0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:50,28:78:99:628,0,1448
7    142498897    rs1042959    A    G    675.10    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.55;DB;DP=69;Dels=0.0;FS=5.043;HRun=1;HaplotypeScore=0.9734;MQ=57.2;MQ0=0;MQRankSum=-0.211;QD=9.78;ReadPosRankSum=0.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:42,27:69:99:705,0,1205
7    142499071    rs1042960    T    C    1902.71    PASS    AB=0.221;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.523;DB;DP=96;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.8807;MQ=55.62;MQ0=0;MQRankSum=-2.033;QD=19.82;ReadPosRankSum=0.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390412    GT:AD:DP:GQ:PL    0/1:21,74:96:99:1933,0,510
7    142499190    .    G    A    260.50    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.389;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.38;MQ0=0;MQRankSum=-4.4;QD=6.86;ReadPosRankSum=-2.704;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390414    GT:AD:DP:GQ:PL    0/1:20,18:38:99:290,0,723
7    142499205    .    C    CA    416.41    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=4.724;DP=32;FS=0.0;HRun=1;HaplotypeScore=207.9208;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=-4.407;QD=13.01;ReadPosRankSum=-1.957;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRBJ2-2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390414    GT:AD:DP:GQ:PL    0/1:19,13:32:99:455,0,497
7    142499729    rs3114480    T    C    2054.58    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.662;DB;DP=161;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.4163;MQ=59.71;MQ0=0;MQRankSum=1.836;QD=12.76;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRBC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:83,76:161:99:2085,0,2636
7    142499762    rs706    A    G    1661.23    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=99;Dels=0.0;FS=3.08;HRun=0;HaplotypeScore=1.7608;MQ=59.77;MQ0=0;MQRankSum=-0.345;QD=16.78;ReadPosRankSum=-0.744;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRBC2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:47,52:99:99:1691,0,1537
7    142561786    rs56300555    T    C    1748.07    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.865;DB;DP=130;Dels=0.0;FS=3.23;HRun=0;HaplotypeScore=2.6342;MQ=59.65;MQ0=0;MQRankSum=2.059;QD=13.45;ReadPosRankSum=0.858;SNPEFF_AMINO_ACID_CHANGE=H76;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142561724_142562504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHB6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392957    GT:AD:DP:GQ:PL    0/1:60,70:130:99:1778,0,1794
7    142566163    rs6944571    C    G    544.53    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=41;Dels=0.0;FS=4.533;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.327;QD=13.28;ReadPosRankSum=0.719;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311470    GT:AD:DP:GQ:PL    0/1:19,22:41:99:575,0,583
7    142583330    rs17881456    A    C    1233.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3204;MQ=58.29;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436401    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1267,108,0
7    142610003    rs72340057    G    GATCT    264.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=76.4038;IndelType=I;MQ=59.36;MQ0=0;QD=13.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265310    GT:AD:DP:GQ:PL    1/1:14,5:19:15.04:306,15,0
7    142724062    rs9885986    C    T    875.56    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=3.152;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.65;MQ0=0;MQRankSum=-0.103;QD=13.27;ReadPosRankSum=-0.853;SNPEFF_AMINO_ACID_CHANGE=R53H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142723245_142724282;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350513    GT:AD:DP:GQ:PL    0/1:37,29:66:99:906,0,1161
7    142749294    rs117588792    C    T    56.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=7.11;ReadPosRankSum=0.922;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418316    GT:AD:DP:GQ:PL    0/1:4,4:8:86.91:87,0,144
7    142749417    rs17164102    C    T    850.33    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.057;DB;DP=66;Dels=0.0;FS=4.672;HRun=0;HaplotypeScore=1.5518;MQ=59.65;MQ0=0;MQRankSum=-0.129;QD=12.88;ReadPosRankSum=0.013;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_142749417_142750444;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418316    GT:AD:DP:GQ:PL    0/1:37,29:66:99:880,0,1236
7    142749737    rs17164103    C    T    1593.40    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.161;DB;DP=95;Dels=0.0;FS=0.792;HRun=2;HaplotypeScore=2.787;MQ=59.47;MQ0=0;MQRankSum=-0.69;QD=16.77;ReadPosRankSum=0.825;SNPEFF_AMINO_ACID_CHANGE=Y100;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142749417_142750444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6V1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418316    GT:AD:DP:GQ:PL    0/1:44,51:95:99:1623,0,1378
7    142749953    rs11975892    C    T    1224.88    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.284;DB;DP=102;Dels=0.0;FS=11.741;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.203;QD=12.01;ReadPosRankSum=-0.41;SNPEFF_AMINO_ACID_CHANGE=I172;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142749417_142750444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6V1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418316    GT:AD:DP:GQ:PL    0/1:59,43:102:99:1255,0,1821
7    142750147    rs10245778    C    T    1118.57    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.045;DB;DP=78;Dels=0.0;FS=4.535;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.663;QD=14.34;ReadPosRankSum=0.822;SNPEFF_AMINO_ACID_CHANGE=S237F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142749417_142750444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6V1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418316    GT:AD:DP:GQ:PL    0/1:41,37:78:99:1149,0,1235
7    142760635    .    AG    A    363.20    PASS    AB=0.903;AC=1;AF=0.50;AN=2;BaseQRankSum=2.792;DP=55;FS=35.534;HRun=1;HaplotypeScore=478.6038;IndelType=D;MQ=41.05;MQ0=0;MQRankSum=-1.115;QD=6.49;ReadPosRankSum=-0.772;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR6W1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340373    GT:AD:DP:GQ:PL    0/1:50,6:55:99:402,0,250
7    142760866    rs12668105    G    A    331.80    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.55;MQ0=0;MQRankSum=-0.488;QD=20.74;ReadPosRankSum=-0.271;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR6W1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340373    GT:AD:DP:GQ:PL    0/1:6,10:16:99:362,0,194
7    142832255    rs10234174    C    T    31.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291009    GT:AD:DP:GQ:PL    0/1:3,2:5:61.73:62,0,111
7    142836440    rs6959713    A    G    145.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=14;Dels=0.0;FS=9.89;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=10.37;ReadPosRankSum=2.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291009    GT:AD:DP:GQ:PL    0/1:7,7:14:99:175,0,249
7    142881540    rs4726600    G    A    642.79    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.598;DB;DP=74;Dels=0.0;FS=1.307;HRun=2;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=8.69;ReadPosRankSum=-2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446620    GT:AD:DP:GQ:PL    0/1:49,25:74:99:673,0,1688
7    142919731    rs10260248    C    A    1106.20    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.482;DB;DP=83;Dels=0.0;FS=1.822;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-2.236;QD=13.33;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=S187Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_142919130_142920162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408947    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1136,0,1527
7    142988873    rs72277014    C    CT    30.49    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.935;DB;DP=36;FS=0.0;HRun=20;HaplotypeScore=459.4534;IndelType=I;MQ=43.5;MQ0=0;MQRankSum=-1.47;QD=0.85;ReadPosRankSum=-1.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM139;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359333    GT:AD:DP:GQ:PL    1/1:28,6:36:15.37:72,15,0
7    143013171    rs6464541    T    G    89.99    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.0;ReadPosRankSum=-0.922;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:5,4:9:99:120,0,110
7    143016928    rs6962852    C    T    1599.65    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=6.103;DB;DP=113;Dels=0.0;FS=5.091;HRun=0;HaplotypeScore=3.4034;MQ=59.59;MQ0=0;MQRankSum=0.788;QD=14.16;ReadPosRankSum=-0.351;SNPEFF_AMINO_ACID_CHANGE=T87;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143016848_143016968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:57,55:113:99:1630,0,1648
7    143017807    rs10282312    G    T    2099.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=G118W;SNPEFF_CODON_CHANGE=Ggg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143017757_143017888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2133,157,0
7    143017960    rs7800971    C    G    457.58    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=4.361;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=11.44;ReadPosRankSum=-0.948;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:21,19:40:99:488,0,582
7    143020625    rs2272257    T    C    73.57    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.39;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:104,0,29
7    143028536    rs2242493    G    A    94.16    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.18;QD=7.24;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495612    GT:AD:DP:GQ:PL    0/1:9,4:13:99:124,0,278
7    143029371    rs2367941    G    T    212.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495612    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:245,21,0
7    143036318    rs2272253    G    A    1459.96    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=107;Dels=0.0;FS=6.378;HRun=0;HaplotypeScore=2.709;MQ=59.78;MQ0=0;MQRankSum=0.022;QD=13.64;ReadPosRankSum=0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:59,48:107:99:1490,0,1843
7    143036337    rs2272252    C    T    1436.38    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.449;DB;DP=117;Dels=0.0;FS=1.466;HRun=3;HaplotypeScore=1.3123;MQ=59.8;MQ0=0;MQRankSum=-0.626;QD=12.28;ReadPosRankSum=-1.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:64,53:117:99:1466,0,1894
7    143036548    rs6464542    T    A    384.30    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=25;Dels=0.0;FS=3.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.068;QD=15.37;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:12,13:25:99:414,0,425
7    143039311    rs940864    A    G    156.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.201;DB;DP=18;Dels=0.0;FS=2.452;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.234;QD=8.68;ReadPosRankSum=2.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:12,6:18:99:186,0,411
7    143043240    rs13438232    C    T    620.11    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.498;DB;DP=44;Dels=0.0;FS=4.591;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.109;QD=14.09;ReadPosRankSum=0.863;SNPEFF_AMINO_ACID_CHANGE=P727L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143043233_143043344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:23,21:44:99:650,0,630
7    143043377    rs56680997    C    G    369.19    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.412;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.253;QD=17.58;ReadPosRankSum=1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:8,13:21:99:399,0,234
7    143043607    rs2242492    G    C    515.27    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.505;DB;DP=44;Dels=0.0;FS=5.978;HRun=0;HaplotypeScore=1.98;MQ=58.95;MQ0=0;MQRankSum=-2.031;QD=11.71;ReadPosRankSum=-0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:25,19:44:99:545,0,782
7    143043890    rs2242491    A    G    120.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.13;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.194;QD=8.58;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:8,6:14:99:150,0,246
7    143043902    rs2242490    C    T    97.98    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.2;MQ0=0;MQRankSum=-1.003;QD=7.54;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:9,4:13:99:128,0,262
7    143043939    rs2242489    T    C    327.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=18;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.049;QD=18.19;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343257    GT:AD:DP:GQ:PL    0/1:8,10:18:99:357,0,241
7    143047873    rs113431976    CT    C    94.45    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=19;FS=0.0;HRun=14;HaplotypeScore=161.4845;IndelType=D;MQ=52.67;MQ0=0;MQRankSum=0.674;QD=4.97;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409222    GT:AD:DP:GQ:PL    0/1:10,8:19:90.99:133,0,91
7    143054585    rs6958357    A    G    947.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM131B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519161    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:980,75,0
7    143078928    rs10808025    C    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZYX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322764    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    143085819    rs6954724    G    A    274.15    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=27;Dels=0.0;FS=9.061;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.075;QD=10.15;ReadPosRankSum=-0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275815    GT:AD:DP:GQ:PL    0/1:17,10:27:99:304,0,538
7    143086832    rs10266621    T    C    78.09    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=5.58;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275815    GT:AD:DP:GQ:PL    0/1:9,5:14:99:108,0,324
7    143088526    rs1131885    T    C    344.60    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=15.66;ReadPosRankSum=0.792;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465208    GT:AD:DP:GQ:PL    0/1:8,13:21:99:375,0,192
7    143088823    rs1804527    T    C    457.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.17;MQ0=0;QD=20.81;SNPEFF_AMINO_ACID_CHANGE=P914;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143088713_143088868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275815    GT:AD:DP:GQ:PL    1/1:0,22:22:39.10:491,39,0
7    143088867    rs6967117    T    C    484.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=26.93;SNPEFF_AMINO_ACID_CHANGE=M900V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143088713_143088868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275815    GT:AD:DP:GQ:PL    1/1:0,18:18:39.13:518,39,0
7    143093307    rs7800937    G    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479459    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
7    143093538    rs10952549    G    A    306.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.82;SNPEFF_AMINO_ACID_CHANGE=L613;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143093478_143093603;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000275815    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:339,27,0
7    143093824    rs2242601    G    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479459    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    143095256    rs35251323    A    G    62.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=8.95;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497891    GT:AD:DP:GQ:PL    0/1:4,3:7:92.63:93,0,132
7    143095378    rs3812407    T    C    463.91    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.57;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.19;QD=13.64;ReadPosRankSum=-1.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497891    GT:AD:DP:GQ:PL    0/1:16,18:34:99:494,0,527
7    143097100    rs4725617    A    G    886.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.6;SNPEFF_AMINO_ACID_CHANGE=V160A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143096744_143097146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275815    GT:AD:DP:GQ:PL    1/1:0,31:31:72.20:920,72,0
7    143104816    rs7794735    G    A    1360.76    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.09;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5653;MQ=59.71;MQ0=0;MQRankSum=2.039;QD=17.22;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EPHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275815    GT:AD:DP:GQ:PL    0/1:36,43:79:99:1391,0,1046
7    143134795    rs6944279    A    T    444.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.97;MQ0=0;MQRankSum=1.537;QD=16.45;ReadPosRankSum=0.122;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC092214.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429289    GT:AD:DP:GQ:PL    0/1:12,15:27:99:474,0,415
7    143141475    rs4595035    T    C    700.35    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=80;Dels=0.0;FS=7.002;HRun=1;HaplotypeScore=3.4574;MQ=59.71;MQ0=0;MQRankSum=-0.367;QD=8.75;ReadPosRankSum=0.264;SNPEFF_AMINO_ACID_CHANGE=R310;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143140546_143141502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R60;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332690    GT:AD:DP:GQ:PL    0/1:52,28:80:99:730,0,1667
7    143174892    rs1404634    A    G    579.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.49;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408916    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:612,48,0
7    143175154    rs1404635    G    A    708.93    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.666;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=55.95;MQ0=0;MQRankSum=-0.047;QD=15.08;ReadPosRankSum=-1.01;SNPEFF_AMINO_ACID_CHANGE=T63;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143174966_143175889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408916    GT:AD:DP:GQ:PL    0/1:22,24:47:99:739,0,521
7    143175345    rs10278721    C    T    393.89    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.482;DB;DP=19;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=20.73;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=P127L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143174966_143175889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408916    GT:AD:DP:GQ:PL    0/1:6,13:19:99:424,0,159
7    143208737    rs137875435    GC    G    347.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=4;HaplotypeScore=33.2915;IndelType=D;MQ=61.94;MQ0=0;QD=31.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC092214.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429289    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:389,33,0
7    143208968    rs17382409    A    G    128.25    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.825;QD=11.66;ReadPosRankSum=-0.143;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC092214.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429289    GT:AD:DP:GQ:PL    0/1:6,5:11:99:158,0,188
7    143270172    rs72611576    A    G    666.25    MQFilter40    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=250;DS;Dels=0.0;FS=0.639;HRun=1;HaplotypeScore=2.6834;MQ=26.86;MQ0=29;MQRankSum=0.104;QD=2.66;ReadPosRankSum=0.028;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=CTAGE15P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420911    GT:AD:DP:GQ:PL    0/1:198,52:250:99:696,0,4184
7    143295456    .    A    C    1289.21    MQFilter40    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.053;DP=195;Dels=0.0;FS=0.616;HRun=1;HaplotypeScore=0.0;MQ=26.01;MQ0=31;MQRankSum=-0.914;QD=6.61;ReadPosRankSum=-0.948;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM115B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414990    GT:AD:DP:GQ:PL    0/1:110,84:195:99:1319,0,1936
7    143417083    rs144677924    T    C    115.59    MQFilter40;QDFilter2    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=87;Dels=0.0;FS=4.043;HRun=0;HaplotypeScore=0.0;MQ=18.1;MQ0=16;MQRankSum=-2.244;QD=1.33;ReadPosRankSum=1.303;SNPEFF_AMINO_ACID_CHANGE=C147R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143416776_143417767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM115C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409703    GT:AD:DP:GQ:PL    0/1:55,32:87:99:146,0,639
7    143508187    rs80254875    C    CT    116.84    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=29;FS=0.0;HRun=12;HaplotypeScore=87.745;IndelType=I;MQ=35.62;MQ0=0;MQRankSum=-1.361;QD=4.03;ReadPosRankSum=0.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-61L23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463346    GT:AD:DP:GQ:PL    0/1:21,8:29:99:156,0,316
7    143508240    rs117019593    A    G    31.27    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.04;MQ0=2;MQRankSum=0.72;QD=3.91;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-61L23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463346    GT:AD:DP:GQ:PL    0/1:6,2:8:61.26:61,0,141
7    143510117    .    G    A    236.94    MQFilter40    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DP=88;Dels=0.0;FS=6.644;HRun=0;HaplotypeScore=0.5784;MQ=22.93;MQ0=8;MQRankSum=-2.076;QD=2.69;ReadPosRankSum=0.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-61L23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463346    GT:AD:DP:GQ:PL    0/1:65,23:88:99:267,0,1104
7    143554451    .    G    A    82.02    MQFilter40;QDFilter2    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DP=71;Dels=0.0;FS=2.363;HRun=2;HaplotypeScore=2.1445;MQ=12.21;MQ0=42;MQRankSum=-0.598;QD=1.16;ReadPosRankSum=-1.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM115A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355951    GT:AD:DP:GQ:PL    0/1:41,30:71:99:112,0,190
7    143556202    rs139529707    C    T    207.57    MQFilter40    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DB;DP=79;Dels=0.0;FS=3.33;HRun=1;HaplotypeScore=0.0;MQ=20.55;MQ0=29;MQRankSum=-1.161;QD=2.63;ReadPosRankSum=2.502;SNPEFF_AMINO_ACID_CHANGE=E740;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143555917_143556254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM115A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355951    GT:AD:DP:GQ:PL    0/1:58,21:79:99:238,0,631
7    143632265    rs2240358    A    G    325.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=36.14;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_143632259_143633372;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408955    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
7    143632618    rs2240359    C    T    3112.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.68;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=A98V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143632259_143633372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408955    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3145,241,0
7    143632833    rs13229174    A    G    554.90    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.535;DB;DP=42;Dels=0.0;FS=1.328;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.639;QD=13.21;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=T170A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143632259_143633372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408955    GT:AD:DP:GQ:PL    0/1:22,20:42:99:585,0,683
7    143633157    rs13235235    T    C    682.19    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.078;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-2.177;QD=11.76;ReadPosRankSum=-1.158;SNPEFF_AMINO_ACID_CHANGE=Y278H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143632259_143633372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408955    GT:AD:DP:GQ:PL    0/1:31,27:58:99:712,0,1051
7    143633297    rs984764    A    G    536.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=31.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408955    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:569,42,0
7    143656915    rs2189875    C    G    166.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392899    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
7    143657427    rs2072164    C    T    981.43    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.652;DB;DP=62;Dels=0.0;FS=1.133;HRun=0;HaplotypeScore=0.0;MQ=57.91;MQ0=0;MQRankSum=0.53;QD=15.83;ReadPosRankSum=0.152;SNPEFF_AMINO_ACID_CHANGE=R122C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143657027_143658108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392899    GT:AD:DP:GQ:PL    0/1:27,35:62:99:1011,0,770
7    143657473    rs2072165    A    G    566.48    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.686;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.83;MQ0=0;MQRankSum=0.046;QD=15.31;ReadPosRankSum=-0.503;SNPEFF_AMINO_ACID_CHANGE=H137R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143657027_143658108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392899    GT:AD:DP:GQ:PL    0/1:17,20:37:99:596,0,570
7    143657801    rs2072166    A    G    2014.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=T246;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143657027_143658108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392899    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2048,156,0
7    143701884    rs728275    C    T    897.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.163;DB;DP=72;Dels=0.0;FS=3.387;HRun=2;HaplotypeScore=0.9789;MQ=59.68;MQ0=0;MQRankSum=-0.493;QD=12.46;ReadPosRankSum=0.517;SNPEFF_AMINO_ACID_CHANGE=A265;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143701022_143702068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408922    GT:AD:DP:GQ:PL    0/1:36,36:72:99:927,0,1071
7    143747870    rs2961144    A    G    1534.87    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.839;DB;DP=119;Dels=0.0;FS=7.193;HRun=0;HaplotypeScore=0.8667;MQ=59.84;MQ0=0;MQRankSum=-0.426;QD=12.9;ReadPosRankSum=-1.141;SNPEFF_AMINO_ACID_CHANGE=I126V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143747461_143748473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408906    GT:AD:DP:GQ:PL    0/1:67,52:119:99:1565,0,1968
7    143748098    rs6464573    G    T    1633.87    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.512;DB;DP=123;Dels=0.0;FS=4.449;HRun=1;HaplotypeScore=1.9829;MQ=60.0;MQ0=0;MQRankSum=1.196;QD=13.18;ReadPosRankSum=-0.911;SNPEFF_AMINO_ACID_CHANGE=A202S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143747461_143748473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408906    GT:AD:DP:GQ:PL    0/1:67,56:123:99:1664,0,2259
7    143748257    rs6464574    G    A    1434.19    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=2.395;DB;DP=122;Dels=0.0;FS=1.477;HRun=0;HaplotypeScore=0.9998;MQ=59.81;MQ0=0;MQRankSum=-0.134;QD=11.76;ReadPosRankSum=0.285;SNPEFF_AMINO_ACID_CHANGE=A255T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143747461_143748473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408906    GT:AD:DP:GQ:PL    0/1:70,52:122:99:1464,0,2028
7    143748364    rs4407791    T    C    1607.67    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=1.33;DB;DP=109;Dels=0.0;FS=0.746;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=1.729;QD=14.75;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=Y290;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143747461_143748473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408906    GT:AD:DP:GQ:PL    0/1:54,55:109:99:1638,0,1669
7    143771111    rs2951309    T    C    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408898    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    143771536    rs6951485    G    A    1325.51    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.605;DB;DP=93;Dels=0.0;FS=2.785;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.089;QD=14.25;ReadPosRankSum=0.79;SNPEFF_AMINO_ACID_CHANGE=S75N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143771275_143772288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408898    GT:AD:DP:GQ:PL    0/1:50,43:93:99:1356,0,1655
7    143771937    rs2961135    G    C    1260.32    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=108;Dels=0.0;FS=1.679;HRun=2;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=0.693;QD=11.67;ReadPosRankSum=-0.662;SNPEFF_AMINO_ACID_CHANGE=A209P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143771275_143772288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408898    GT:AD:DP:GQ:PL    0/1:62,46:108:99:1290,0,1995
7    143792991    rs34947817    G    A    2681.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=182;Dels=0.0;FS=0.572;HRun=2;HaplotypeScore=2.6775;MQ=59.87;MQ0=0;MQRankSum=-1.165;QD=14.74;ReadPosRankSum=-0.895;SNPEFF_AMINO_ACID_CHANGE=S264N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143792141_143793186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408949    GT:AD:DP:GQ:PL    0/1:91,91:182:99:2712,0,2787
7    143793162    rs34470072    A    G    1375.93    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=3.954;DB;DP=87;Dels=0.0;FS=2.163;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=15.82;ReadPosRankSum=-0.786;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408949    GT:AD:DP:GQ:PL    0/1:42,45:87:99:1406,0,1418
7    143806688    rs10230228    C    A    806.52    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DB;DP=58;Dels=0.0;FS=1.01;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.086;QD=13.91;ReadPosRankSum=-1.688;SNPEFF_AMINO_ACID_CHANGE=Q5K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143806607_143807657;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408979    GT:AD:DP:GQ:PL    0/1:30,28:58:99:837,0,1009
7    143807304    rs10252253    T    C    1310.13    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.142;DB;DP=94;Dels=0.0;FS=0.797;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.166;QD=13.94;ReadPosRankSum=-0.88;SNPEFF_AMINO_ACID_CHANGE=L210P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143806607_143807657;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408979    GT:AD:DP:GQ:PL    0/1:44,50:94:99:1340,0,1423
7    143807666    rs10249545    A    G    605.07    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.4;DB;DP=40;Dels=0.0;FS=1.925;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.4;QD=15.13;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408979    GT:AD:DP:GQ:PL    0/1:18,22:40:99:635,0,590
7    143826603    rs2961160    G    T    1239.45    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=96;Dels=0.0;FS=2.748;HRun=0;HaplotypeScore=0.5784;MQ=57.52;MQ0=0;MQRankSum=-1.026;QD=12.91;ReadPosRankSum=-0.646;SNPEFF_AMINO_ACID_CHANGE=S133I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143826151_143827162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408899    GT:AD:DP:GQ:PL    0/1:51,45:96:99:1269,0,1759
7    143826697    rs2961161    C    G    1812.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=180;Dels=0.0;FS=0.569;HRun=1;HaplotypeScore=0.8321;MQ=57.08;MQ0=0;MQRankSum=-1.386;QD=10.07;ReadPosRankSum=0.498;SNPEFF_AMINO_ACID_CHANGE=S164R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143826151_143827162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408899    GT:AD:DP:GQ:PL    0/1:100,80:180:99:1843,0,3007
7    143826729    rs66549240    ACTT    A    2890.77    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=10.331;DB;DP=178;FS=6.774;HRun=0;HaplotypeScore=960.7718;IndelType=D;MQ=56.02;MQ0=1;MQRankSum=0.22;QD=15.71;ReadPosRankSum=0.862;SNPEFF_AMINO_ACID_CHANGE=HF175H;SNPEFF_CODON_CHANGE=cacttc/cac;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_7_143826151_143827162;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408899    GT:AD:DP:GQ:PL    0/1:107,77:178:99:2930,0,5694
7    143827198    rs34308692    CT    C    119.62    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=28;FS=3.136;HRun=11;HaplotypeScore=131.2465;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=0.533;QD=4.27;ReadPosRankSum=-0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408899    GT:AD:DP:GQ:PL    0/1:19,9:28:99:159,0,315
7    143882697    rs145692929    A    G    1667.31    MQFilter40    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.374;DB;DP=243;DS;Dels=0.0;FS=0.69;HRun=0;HaplotypeScore=2.7541;MQ=19.9;MQ0=73;MQRankSum=-3.278;QD=6.86;ReadPosRankSum=0.155;SNPEFF_AMINO_ACID_CHANGE=I701V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143880559_143883146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000486333    GT:AD:DP:GQ:PL    0/1:117,126:243:99:1697,0,1315
7    143929726    .    C    T    607.40    MQFilter40    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=4.433;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.92;MQ0=67;MQRankSum=1.187;QD=4.53;ReadPosRankSum=0.674;SNPEFF_AMINO_ACID_CHANGE=A71T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_143929004_143929936;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391496    GT:AD:DP:GQ:PL    0/1:92,41:134:99:637,0,482
7    143956742    rs77952084    C    G    561.70    PASS    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=2.747;DB;DP=135;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=45.77;MQ0=2;MQRankSum=0.765;QD=4.13;ReadPosRankSum=-0.231;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_143955700_143956815;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493325    GT:AD:DP:GQ:PL    0/1:106,29:135:99:592,0,3208
7    143973750    rs77463661    G    T    45.86    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=50.39;MQ0=0;MQRankSum=-1.818;QD=4.59;ReadPosRankSum=1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543357    GT:AD:DP:GQ:PL    0/1:7,3:10:75.85:76,0,156
7    143982618    .    T    C    1399.71    MQFilter40    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.826;DP=226;DS;Dels=0.0;FS=2.693;HRun=0;HaplotypeScore=1.9664;MQ=26.37;MQ0=16;MQRankSum=-2.069;QD=6.19;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543357    GT:AD:DP:GQ:PL    0/1:145,81:226:99:1430,0,2960
7    143982776    .    G    A    370.45    MQFilter40    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DP=145;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.1;MQ0=82;MQRankSum=-0.554;QD=2.55;ReadPosRankSum=-0.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543357    GT:AD:DP:GQ:PL    0/1:96,49:145:99:400,0,870
7    144015434    rs141871720    A    G    1760.30    MQFilter40    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.755;DB;DP=206;Dels=0.0;FS=9.98;HRun=0;HaplotypeScore=5.6647;MQ=20.68;MQ0=66;MQRankSum=0.354;QD=8.55;ReadPosRankSum=1.536;SNPEFF_AMINO_ACID_CHANGE=T73A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_144015218_144016150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408951    GT:AD:DP:GQ:PL    0/1:56,149:206:99:1790,0,121
7    144015437    rs150229766    C    T    1960.24    MQFilter40    AB=0.283;AC=1;AF=0.50;AN=2;BaseQRankSum=1.298;DB;DP=206;Dels=0.0;FS=2.399;HRun=0;HaplotypeScore=4.6731;MQ=21.13;MQ0=64;MQRankSum=0.566;QD=9.52;ReadPosRankSum=1.693;SNPEFF_AMINO_ACID_CHANGE=R74C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_144015218_144016150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408951    GT:AD:DP:GQ:PL    0/1:58,147:206:99:1990,0,185
7    144015687    .    C    T    111.72    MQFilter40;QDFilter2    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=0.139;DP=208;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.23;MQ0=177;MQRankSum=0.298;QD=0.54;ReadPosRankSum=1.647;SNPEFF_AMINO_ACID_CHANGE=A157V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_144015218_144016150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408951    GT:AD:DP:GQ:PL    0/1:137,70:208:99:142,0,168
7    144015720    .    C    G    148.78    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;DP=210;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=5.38;MQ0=191;MQRankSum=1.262;QD=0.71;ReadPosRankSum=-0.066;SNPEFF_AMINO_ACID_CHANGE=S168C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_144015218_144016150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408951    GT:AD:DP:GQ:PL    1/1:99,111:210:20.99:182,21,0
7    144050991    .    G    C    59.68    MQFilter40;QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=1.247;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=27.87;MQ0=0;MQRankSum=1.598;QD=1.71;ReadPosRankSum=-1.773;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000056217    GT:AD:DP:GQ:PL    0/1:29,6:35:89.67:90,0,653
7    144061119    .    C    T    144.23    MQFilter40    AC=2;AF=1.00;AN=2;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=10.69;MQ0=39;QD=2.77;SNPEFF_AMINO_ACID_CHANGE=L453;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_144059751_144062916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000056217    GT:AD:DP:GQ:PL    1/1:35,17:52:18.02:177,18,0
7    144068163    rs146660641    T    C    738.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=22.63;MQ0=8;QD=13.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498580    GT:AD:DP:GQ:PL    1/1:3,49:53:78.07:772,78,0
7    144068214    .    T    C    1003.11    MQFilter40    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=2.581;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0678;MQ=29.05;MQ0=6;MQRankSum=-0.265;QD=6.82;ReadPosRankSum=-1.404;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498580    GT:AD:DP:GQ:PL    0/1:94,53:147:99:1033,0,1994
7    144095600    rs2699503    A    G    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_AMINO_ACID_CHANGE=F400L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_144095375_144095679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOBOX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223140    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
7    144095730    rs11979528    C    T    38.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOBOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
7    144095880    rs2699502    T    C    82.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOBOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555556    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
7    144096598    rs11769847    C    T    298.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOBOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223140    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
7    144096839    rs757388    A    G    4760.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7753;MQ=59.85;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOBOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223140    GT:AD:DP:GQ:PL    1/1:0,152:152:99:4761,364,0
7    144098896    rs727712    T    C    913.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOBOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223140    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:946,69,0
7    144098992    rs727714    G    A    2290.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_AMINO_ACID_CHANGE=L88;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_144098962_144099043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOBOX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467773    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2323,184,0
7    144101509    rs1208166    T    C    82.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOBOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467773    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
7    144320214    rs17170295    G    T    671.82    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.015;DB;DP=62;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.532;QD=10.84;ReadPosRankSum=1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360057    GT:AD:DP:GQ:PL    0/1:38,24:62:99:702,0,1318
7    144462768    rs3779088    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360057    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    144462951    rs3779087    C    T    2193.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.27;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360057    GT:AD:DP:GQ:PL    1/1:0,62:63:99:2227,163,0
7    144702790    rs10267308    A    G    1321.38    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.054;DB;DP=85;Dels=0.0;FS=4.35;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.228;QD=15.55;ReadPosRankSum=-1.635;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073310.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423683    GT:AD:DP:GQ:PL    0/1:37,48:85:99:1351,0,1230
7    144703163    rs35986454    T    G    2396.37    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.433;DB;DP=157;DS;Dels=0.0;FS=5.015;HRun=1;HaplotypeScore=0.7887;MQ=59.85;MQ0=0;MQRankSum=0.628;QD=15.26;ReadPosRankSum=0.078;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073310.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423683    GT:AD:DP:GQ:PL    0/1:82,75:157:99:2426,0,2695
7    144703301    rs7778697    G    A    495.31    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=27;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.9983;MQ=59.14;MQ0=0;MQRankSum=0.268;QD=18.34;ReadPosRankSum=-0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073310.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423683    GT:AD:DP:GQ:PL    0/1:12,15:27:99:525,0,385
7    144706951    rs7778641    A    G    133.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073310.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423683    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:166,15,0
7    144707007    rs10216247    G    C    366.45    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=4.0;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.589;QD=15.93;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073310.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423683    GT:AD:DP:GQ:PL    0/1:10,13:23:99:396,0,294
7    144707022    rs7796110    C    T    196.83    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.093;QD=8.2;ReadPosRankSum=0.279;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073310.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423683    GT:AD:DP:GQ:PL    0/1:13,11:24:99:227,0,436
7    144707023    rs56083156    A    G    190.81    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.304;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.582;QD=7.34;ReadPosRankSum=0.804;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC073310.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423683    GT:AD:DP:GQ:PL    0/1:15,11:26:99:221,0,508
7    146826061    rs3807570    A    G    589.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:623,48,0
7    146997203    rs2692185    T    A    511.94    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DB;DP=49;Dels=0.0;FS=6.655;HRun=5;HaplotypeScore=0.5784;MQ=58.67;MQ0=0;MQRankSum=-2.085;QD=10.45;ReadPosRankSum=-0.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:29,20:49:99:542,0,897
7    146997498    rs3837092    A    AAAAC    470.40    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=34.6915;IndelType=I;MQ=50.46;MQ0=0;MQRankSum=-0.896;QD=42.76;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:4,7:11:99:509,0,160
7    147092861    rs34592169    G    A    1031.51    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=87;Dels=0.0;FS=8.424;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.169;QD=11.86;ReadPosRankSum=-1.256;SNPEFF_AMINO_ACID_CHANGE=A553;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_147092701_147092872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:49,38:87:99:1062,0,1576
7    147259438    rs2074714    A    G    283.99    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.245;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.286;QD=14.95;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:10,9:19:99:314,0,343
7    147335933    rs113545270    C    CT    976.79    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.26;DB;DP=70;FS=7.628;HRun=13;HaplotypeScore=257.649;IndelType=I;MQ=59.09;MQ0=0;MQRankSum=1.971;QD=13.95;ReadPosRankSum=1.548;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_147335901_147335970;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000455301    GT:AD:DP:GQ:PL    0/1:25,42:70:11.08:1016,0,11
7    147600604    rs2538962    C    A    210.98    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=19.18;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:4,7:11:99:241,0,134
7    147674751    rs4296960    T    C    32.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:2,2:4:62.96:63,0,66
7    147674912    rs2373284    T    C    337.79    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=26;Dels=0.0;FS=4.809;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.386;QD=12.99;ReadPosRankSum=0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:14,12:26:99:368,0,490
7    147914885    rs12333931    T    G    45.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    147926888    rs3779032    A    C    481.50    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.662;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.01;MQ0=0;MQRankSum=-0.816;QD=10.24;ReadPosRankSum=-1.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:26,21:47:99:511,0,793
7    147963983    rs10248273    G    C    123.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
7    147964016    rs3801975    A    G    366.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:399,30,0
7    147964091    rs3801976    G    A    1333.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1366,102,0
7    147964377    rs13240892    A    G    72.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.38;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,142
7    148080499    rs1637843    T    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    148080597    rs1637842    C    T    212.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:246,18,0
7    148080647    rs1637841    T    G    460.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:494,36,0
7    148106754    rs11764737    A    G    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361727    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    148311115    rs111634626    G    GT    3036.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.0;HRun=3;HaplotypeScore=159.6931;IndelType=I;MQ=60.72;MQ0=0;QD=40.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307003    GT:AD:DP:GQ:PL    1/1:1,71:75:99:3079,223,0
7    148312382    rs6962115    T    G    1011.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307003    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1045,78,0
7    148312520    rs6962292    T    C    1222.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=30.56;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307003    GT:AD:DP:GQ:PL    1/1:0,40:40:96.23:1256,96,0
7    148463860    rs1014095    T    C    864.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:898,66,0
7    148464675    rs6956231    T    G    1016.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=26.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    1/1:1,38:39:84.24:1050,84,0
7    148483760    rs2072406    G    A    268.24    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.543;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7719;MQ=60.0;MQ0=0;MQRankSum=-1.48;QD=11.18;ReadPosRankSum=-1.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:15,9:24:99:298,0,500
7    148484019    rs67104604    A    G    433.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=34;Dels=0.0;FS=1.5;HRun=1;HaplotypeScore=1.4105;MQ=59.32;MQ0=0;MQRankSum=0.344;QD=12.75;ReadPosRankSum=-0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:17,17:34:99:463,0,498
7    148485529    rs140011356    CTTTGCTAGT    C    347.41    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=115.6374;IndelType=D;MQ=50.15;MQ0=0;MQRankSum=-2.933;QD=24.81;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:9,5:14:99:386,0,1281
7    148485603    rs67507356    G    A    284.26    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.514;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.91;MQ0=0;MQRankSum=0.19;QD=8.88;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:21,11:32:99:314,0,703
7    148487329    rs933436    G    T    246.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.934;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=11.19;ReadPosRankSum=-1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:12,10:22:99:276,0,430
7    148487395    rs2007404    T    C    709.30    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=43;Dels=0.0;FS=1.435;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.105;QD=16.5;ReadPosRankSum=-0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:16,27:43:99:739,0,468
7    148494745    rs143144359    T    G    32.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=10.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:62,0,24
7    148495860    rs67248614    A    G    386.24    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.548;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8661;MQ=60.0;MQ0=0;MQRankSum=-1.713;QD=10.44;ReadPosRankSum=-0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:23,13:37:99:416,0,803
7    148496276    rs11979066    G    A    104.37    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=9.49;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325222    GT:AD:DP:GQ:PL    0/1:7,4:11:99:134,0,201
7    148504716    rs3217095    AG    A    87.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=6;HaplotypeScore=21.7181;IndelType=D;MQ=60.0;MQ0=0;QD=17.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EZH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469631    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:129,12,0
7    148506064    rs740949    A    G    66.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.01;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EZH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469631    GT:AD:DP:GQ:PL    0/1:3,3:6:96.07:96,0,105
7    148506363    rs10268879    T    G    1174.36    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.384;DB;DP=124;Dels=0.0;FS=2.452;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.341;QD=9.47;ReadPosRankSum=-1.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EZH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469631    GT:AD:DP:GQ:PL    0/1:76,48:124:99:1204,0,2396
7    148508833    rs2072407    A    G    422.38    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=12.8;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EZH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320356    GT:AD:DP:GQ:PL    0/1:15,18:33:99:452,0,439
7    148529922    rs17552167    C    T    369.46    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.718;DB;DP=27;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.615;QD=13.68;ReadPosRankSum=-2.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EZH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320356    GT:AD:DP:GQ:PL    0/1:13,14:27:99:399,0,451
7    148543525    rs10274535    A    G    1484.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8043;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EZH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320356    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1517,114,0
7    148543693    rs3214332    TA    T    327.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=11;HaplotypeScore=68.1357;IndelType=D;MQ=60.98;MQ0=0;QD=14.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EZH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320356    GT:AD:DP:GQ:PL    1/1:7,15:22:44.94:370,45,0
7    148700083    rs11414114    T    TC    665.74    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.069;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=79.6181;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.594;QD=17.99;ReadPosRankSum=1.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286091    GT:AD:DP:GQ:PL    0/1:20,17:37:99:705,0,704
7    148700849    rs9065    C    T    203.42    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.608;DB;DP=16;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9665;MQ=58.55;MQ0=0;MQRankSum=1.625;QD=12.71;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466592    GT:AD:DP:GQ:PL    0/1:7,8:16:99:233,0,172
7    148701168    rs6971353    C    T    1071.48    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.214;DB;DP=71;Dels=0.0;FS=2.226;HRun=0;HaplotypeScore=0.9894;MQ=59.68;MQ0=0;MQRankSum=2.117;QD=15.09;ReadPosRankSum=0.03;SNPEFF_AMINO_ACID_CHANGE=A552;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_148700154_148701301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286091    GT:AD:DP:GQ:PL    0/1:32,38:71:99:1101,0,925
7    148702157    rs28532077    C    T    429.62    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.018;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8279;MQ=58.48;MQ0=0;MQRankSum=0.038;QD=9.99;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286091    GT:AD:DP:GQ:PL    0/1:27,16:43:99:460,0,859
7    148702486    rs7795577    A    G    737.05    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.282;DB;DP=42;Dels=0.0;FS=5.857;HRun=0;HaplotypeScore=1.7885;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=17.55;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286091    GT:AD:DP:GQ:PL    0/1:17,25:42:99:767,0,571
7    148702496    rs7777113    C    T    530.61    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.804;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.758;QD=15.61;ReadPosRankSum=-0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286091    GT:AD:DP:GQ:PL    0/1:15,19:34:99:561,0,365
7    148702958    rs150408680    AC    A    142.12    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=3.0;DB;DP=19;FS=4.775;HRun=6;HaplotypeScore=47.8187;IndelType=D;MQ=58.78;MQ0=0;MQRankSum=-2.155;QD=7.48;ReadPosRankSum=1.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286091    GT:AD:DP:GQ:PL    0/1:12,7:19:99:181,0,435
7    148705221    rs2306172    A    G    277.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.5598;MQ=57.66;MQ0=0;QD=27.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286091    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:311,27,0
7    148716320    rs56932055    G    A    445.98    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.132;QD=23.47;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286091    GT:AD:DP:GQ:PL    0/1:6,13:19:99:476,0,185
7    148724945    rs6952916    T    C    512.73    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.012;DB;DP=46;Dels=0.0;FS=2.635;HRun=0;HaplotypeScore=3.8756;MQ=59.09;MQ0=0;MQRankSum=-1.049;QD=11.15;ReadPosRankSum=0.059;SNPEFF_AMINO_ACID_CHANGE=K76;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_148724941_148725084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413966    GT:AD:DP:GQ:PL    0/1:24,22:46:99:543,0,840
7    148778048    rs147235781    T    G    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.63;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF786;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316286    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:69,0,66
7    148801091    rs11525060    G    A    2918.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.48;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=N624;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_148799876_148802658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF425;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378061    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2951,217,0
7    148801658    rs1137432    C    T    1943.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=Q435;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_148799876_148802658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF425;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378061    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1977,150,0
7    148809054    rs13239832    A    G    111.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF425;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484196    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
7    148809451    rs6464938    T    C    1929.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.63;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF425;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378061    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1963,168,0
7    148815481    rs143827449    G    A    812.18    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8808;MQ=59.69;MQ0=0;MQRankSum=0.082;QD=13.31;ReadPosRankSum=0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF425;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378061    GT:AD:DP:GQ:PL    0/1:35,26:61:99:842,0,1084
7    148823366    rs10251621    A    G    116.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF398;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426851    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
7    148851213    rs917124    G    A    1784.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_AMINO_ACID_CHANGE=L67;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_148851037_148851432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF398;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000475153    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1818,135,0
7    148863414    rs71990250    CAGCTCCA    C    1760.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=198.7883;IndelType=D;MQ=31.58;MQ0=0;QD=67.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF398;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485111    GT:AD:DP:GQ:PL    1/1:3,23:26:69.24:1803,69,0
7    148863870    .    T    C    113.89    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=55.66;MQ0=0;MQRankSum=0.825;QD=10.35;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF398;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485111    GT:AD:DP:GQ:PL    0/1:5,6:11:99:144,0,151
7    148873497    rs1568944    T    A    1244.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF398;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335901    GT:AD:DP:GQ:PL    1/1:0,32:32:93.31:1277,93,0
7    148875632    rs1202461    T    A    1083.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF398;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335901    GT:AD:DP:GQ:PL    1/1:0,28:28:84.25:1117,84,0
7    148888415    .    TCTCA    T    641.75    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=0;HaplotypeScore=118.6056;IndelType=D;MQ=23.82;MQ0=0;QD=33.78;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262085    GT:AD:DP:GQ:PL    1/1:2,17:14:36.12:684,36,0
7    148888461    rs12531590    A    C    99.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.46;MQ0=0;QD=11.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262085    GT:AD:DP:GQ:PL    1/1:0,9:9:14.96:132,15,0
7    148888534    rs12539299    C    T    76.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.34;MQ0=0;QD=25.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262085    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
7    148888538    rs12539300    C    T    76.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.34;MQ0=0;QD=25.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262085    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
7    148895304    rs12535154    G    A    361.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262085    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:394,30,0
7    148903597    rs13221837    G    A    347.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=31.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262085    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:381,30,0
7    148903984    rs12537763    G    A    743.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262085    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:776,57,0
7    148904624    rs7784122    C    T    85.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462740    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
7    148904795    rs12704071    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462740    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
7    148907686    rs114454649    C    T    59.14    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=5.91;ReadPosRankSum=1.386;SNPEFF_AMINO_ACID_CHANGE=P281L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_148907677_148907796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262085    GT:AD:DP:GQ:PL    0/1:7,3:10:89.13:89,0,247
7    148907849    rs10952805    G    A    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF282;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462740    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
7    149148319    rs4727071    T    C    74.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF777;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247930    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
7    149152770    rs3735319    A    G    2417.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=59.36;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=V115A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149152268_149153128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF777;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247930    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2451,193,0
7    149152906    rs3735318    G    A    2441.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=35.39;SNPEFF_AMINO_ACID_CHANGE=R70W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149152268_149153128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF777;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247930    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2475,181,0
7    149174542    rs4727073    G    A    95.99    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.597;QD=7.38;ReadPosRankSum=-1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF746;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340622    GT:AD:DP:GQ:PL    0/1:7,6:13:99:126,0,245
7    149189676    rs2373502    T    C    485.07    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=1.803;DB;DP=32;Dels=0.0;FS=11.357;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=15.16;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF746;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340622    GT:AD:DP:GQ:PL    0/1:13,19:32:99:515,0,409
7    149191027    rs13236631    T    C    2719.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.577;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7801;MQ=59.46;MQ0=0;MQRankSum=-0.977;QD=34.86;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF746;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340622    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2752,175,0
7    149191460    rs112293204    G    A    595.90    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=3.471;DB;DP=72;Dels=0.0;FS=1.04;HRun=0;HaplotypeScore=3.5501;MQ=39.3;MQ0=2;MQRankSum=-0.16;QD=8.28;ReadPosRankSum=0.249;SNPEFF_AMINO_ACID_CHANGE=A40;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149191295_149191595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF746;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000461958    GT:AD:DP:GQ:PL    0/1:42,30:72:99:626,0,907
7    149249001    rs4727086    C    T    128.87    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=9.2;ReadPosRankSum=1.333;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF767;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463567    GT:AD:DP:GQ:PL    0/1:9,5:14:99:159,0,333
7    149255682    rs10628427    T    TTG    324.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=14.5873;IndelType=I;MQ=60.0;MQ0=0;QD=54.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF767;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481762    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:366,18,0
7    149256086    rs1978186    C    T    90.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF767;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463567    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
7    149317053    rs354055    T    C    608.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.541;DB;DP=56;Dels=0.0;FS=5.003;HRun=1;HaplotypeScore=0.0;MQ=50.29;MQ0=2;MQRankSum=-4.47;QD=10.86;ReadPosRankSum=0.578;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF767;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463567    GT:AD:DP:GQ:PL    0/1:28,28:56:99:638,0,972
7    149317216    rs354056    A    G    237.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF767;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463567    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
7    149318375    rs354058    C    T    2460.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2829;MQ=53.12;MQ0=0;QD=29.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF767;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463567    GT:AD:DP:GQ:PL    1/1:0,79:84:99:2494,202,0
7    149318471    rs354059    C    T    919.45    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=101;Dels=0.0;FS=8.829;HRun=1;HaplotypeScore=1.367;MQ=42.8;MQ0=2;MQRankSum=0.127;QD=9.1;ReadPosRankSum=-2.603;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF767;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463567    GT:AD:DP:GQ:PL    0/1:57,44:101:99:949,0,1304
7    149318681    rs354060    T    C    74.46    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.018;DB;DP=27;Dels=0.0;FS=8.86;HRun=0;HaplotypeScore=0.7887;MQ=47.04;MQ0=0;MQRankSum=-3.934;QD=2.76;ReadPosRankSum=1.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF767;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463567    GT:AD:DP:GQ:PL    0/1:17,10:27:99:104,0,536
7    149418127    rs66544404    G    C    219.40    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=12.19;ReadPosRankSum=-0.251;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486744    GT:AD:DP:GQ:PL    0/1:7,11:18:99:249,0,195
7    149420820    rs71531643    C    CT    1254.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=2;HaplotypeScore=67.851;IndelType=I;MQ=61.72;MQ0=0;QD=40.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486744    GT:AD:DP:GQ:PL    1/1:1,30:31:90.30:1297,90,0
7    149421061    rs145415160    AC    A    332.53    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=20;FS=0.0;HRun=5;HaplotypeScore=60.0845;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=1.032;QD=16.63;ReadPosRankSum=0.619;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486744    GT:AD:DP:GQ:PL    0/1:9,11:20:99:372,0,303
7    149422718    rs855754    T    C    144.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496080    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:177,15,0
7    149426232    rs855757    C    T    80.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.42;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496080    GT:AD:DP:GQ:PL    0/1:2,4:6:64.51:111,0,65
7    149426305    rs145097116    G    GC    428.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=56.75;IndelType=I;MQ=58.05;MQ0=0;QD=35.7;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000255992    GT:AD:DP:GQ:PL    1/1:2,10:12:33.11:470,33,0
7    149427409    rs709065    T    G    68.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.03;SNPEFF_AMINO_ACID_CHANGE=D600E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149427237_149427431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319551    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:100,9,0
7    149461399    rs117383860    G    C    165.73    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.049;DB;DP=18;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=0.9993;MQ=57.64;MQ0=0;MQRankSum=-0.244;QD=9.21;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF467;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302017    GT:AD:DP:GQ:PL    0/1:11,7:18:99:196,0,350
7    149462621    rs6965332    T    C    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.96;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=T324A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149461452_149463328;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF467;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302017    GT:AD:DP:GQ:PL    0/1:2,2:4:65.32:66,0,65
7    149463370    rs79950237    C    T    393.04    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.256;DB;DP=23;Dels=0.0;FS=6.193;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.713;QD=17.09;ReadPosRankSum=-0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF467;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302017    GT:AD:DP:GQ:PL    0/1:10,13:23:99:423,0,240
7    149474622    rs73727605    G    A    173.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=14.45;ReadPosRankSum=-0.869;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF467;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302017    GT:AD:DP:GQ:PL    0/1:6,6:12:99:203,0,206
7    149476666    rs111343201    G    GC    163.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=9.0697;IndelType=I;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262089    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
7    149480903    rs113587880    CA    C    209.63    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=41.3907;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=13.1;ReadPosRankSum=1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465080    GT:AD:DP:GQ:PL    0/1:8,8:16:99:249,0,339
7    149482764    rs75029939    C    T    132.80    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=10.22;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477518    GT:AD:DP:GQ:PL    0/1:7,6:13:99:163,0,228
7    149483330    rs75263499    C    T    221.34    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.165;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.157;QD=9.22;ReadPosRankSum=0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477518    GT:AD:DP:GQ:PL    0/1:14,9:24:99:251,0,428
7    149484590    rs10262505    T    C    140.72    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=16;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=50.65;MQ0=0;MQRankSum=-0.546;QD=8.8;ReadPosRankSum=1.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477518    GT:AD:DP:GQ:PL    0/1:5,11:16:85.45:171,0,85
7    149484798    rs62490656    C    T    109.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.361;QD=10.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477518    GT:AD:DP:GQ:PL    0/1:4,6:10:85.42:139,0,85
7    149484891    rs855688    A    G    50.46    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=11;Dels=0.0;FS=7.404;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.377;QD=4.59;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477518    GT:AD:DP:GQ:PL    0/1:8,3:11:80.46:80,0,261
7    149485455    rs2079335    G    A    341.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.153;DB;DP=30;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=6.3578;MQ=60.0;MQ0=0;MQRankSum=0.938;QD=11.39;ReadPosRankSum=0.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477518    GT:AD:DP:GQ:PL    0/1:15,15:30:99:372,0,382
7    149486574    rs855694    G    C    122.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477518    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:155,12,0
7    149487319    rs2579591    C    G    68.29    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.07;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262089    GT:AD:DP:GQ:PL    0/1:1,3:4:17.59:98,0,18
7    149499115    rs61047652    CAT    C    349.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=42.3528;IndelType=D;MQ=57.39;MQ0=0;QD=38.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472797    GT:AD:DP:GQ:PL    1/1:0,9:9:23.67:391,24,0
7    149500472    rs10952229    A    G    892.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472797    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:925,72,0
7    149500992    rs4725830    A    G    60.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.14;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472797    GT:AD:DP:GQ:PL    0/1:2,3:5:68.95:91,0,69
7    149506211    rs111744217    G    GC    395.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=41.9093;IndelType=I;MQ=61.07;MQ0=0;QD=39.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484709    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:438,30,0
7    149506471    rs6953743    C    T    38.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.71;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484709    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:68,0,24
7    149507964    rs55776327    C    T    107.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=9;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=11.89;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484709    GT:AD:DP:GQ:PL    0/1:4,5:9:99:137,0,131
7    149509807    rs740110    C    T    301.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=4.12;DB;DP=28;Dels=0.0;FS=3.9;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.321;QD=10.75;ReadPosRankSum=1.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481772    GT:AD:DP:GQ:PL    0/1:16,12:28:99:331,0,481
7    149509817    rs740111    G    T    243.73    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.381;QD=10.16;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481772    GT:AD:DP:GQ:PL    0/1:14,10:24:99:274,0,506
7    149511509    rs79503371    G    A    144.04    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.0;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481772    GT:AD:DP:GQ:PL    0/1:3,5:8:95.31:174,0,95
7    149511985    rs10952230    A    G    181.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481772    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:214,15,0
7    149512177    rs11979187    C    T    148.12    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=13.47;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481772    GT:AD:DP:GQ:PL    0/1:5,6:11:99:178,0,179
7    149512911    rs2074695    A    G    189.30    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=15.77;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481772    GT:AD:DP:GQ:PL    0/1:5,7:12:99:219,0,176
7    149514651    rs77636271    C    G    33.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=10.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.64;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478854    GT:AD:DP:GQ:PL    0/1:2,3:5:27.95:63,0,28
7    149515103    rs10250401    C    T    181.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=18;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=10.11;ReadPosRankSum=1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478854    GT:AD:DP:GQ:PL    0/1:9,9:18:99:212,0,194
7    149515754    rs740113    A    G    113.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-1.276;QD=8.09;ReadPosRankSum=-1.524;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478854    GT:AD:DP:GQ:PL    0/1:7,7:14:99:143,0,214
7    149515775    rs1557955    C    G    83.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5767;MQ=53.03;MQ0=0;MQRankSum=-2.001;QD=5.98;ReadPosRankSum=0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478854    GT:AD:DP:GQ:PL    0/1:8,6:14:99:114,0,251
7    149515796    rs1557956    C    T    64.38    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=53.95;MQ0=0;MQRankSum=-0.278;QD=5.37;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478854    GT:AD:DP:GQ:PL    0/1:7,5:12:94.38:94,0,215
7    149516486    rs6464034    A    G    159.44    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=11;Dels=0.0;FS=6.154;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=14.49;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478854    GT:AD:DP:GQ:PL    0/1:5,6:11:99:189,0,137
7    149518961    rs1008335    T    C    104.07    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=9.46;ReadPosRankSum=-0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378016    GT:AD:DP:GQ:PL    0/1:6,5:11:99:134,0,183
7    149519184    rs1008336    C    T    212.70    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DB;DP=26;Dels=0.0;FS=1.54;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.817;QD=8.18;ReadPosRankSum=-1.344;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378016    GT:AD:DP:GQ:PL    0/1:16,10:26:99:243,0,424
7    149521183    rs4389841    G    A    427.28    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.443;DB;DP=32;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.871;QD=13.35;ReadPosRankSum=1.327;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464974    GT:AD:DP:GQ:PL    0/1:17,15:32:99:457,0,413
7    149521544    rs12673475    C    T    372.12    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.037;DB;DP=22;Dels=0.0;FS=2.128;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.604;QD=16.91;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464974    GT:AD:DP:GQ:PL    0/1:8,14:22:99:402,0,206
7    149522162    rs62617122    G    T    507.41    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.33;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.32;MQ0=0;MQRankSum=0.674;QD=14.92;ReadPosRankSum=0.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464974    GT:AD:DP:GQ:PL    0/1:14,20:34:99:537,0,443
7    149522366    rs2074697    T    G    1076.84    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2778;MQ=58.87;MQ0=0;MQRankSum=-2.275;QD=10.88;ReadPosRankSum=0.184;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000378016    GT:AD:DP:GQ:PL    0/1:54,45:99:99:1107,0,1591
7    149523277    rs1004200    A    G    274.24    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.519;DB;DP=26;Dels=0.0;FS=5.969;HRun=0;HaplotypeScore=0.0;MQ=57.46;MQ0=0;MQRankSum=0.028;QD=10.55;ReadPosRankSum=-0.538;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464974    GT:AD:DP:GQ:PL    0/1:16,10:26:99:304,0,456
7    149524097    rs117000473    G    A    797.63    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=67;Dels=0.0;FS=5.651;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;MQRankSum=0.121;QD=11.9;ReadPosRankSum=-0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464974    GT:AD:DP:GQ:PL    0/1:36,31:67:99:828,0,1158
7    149528262    rs10261977    C    T    79.51    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.197;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.493;QD=4.42;ReadPosRankSum=-1.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461331    GT:AD:DP:GQ:PL    0/1:13,5:18:99:110,0,425
7    149528392    rs10262226    C    T    58.49    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.676;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=3.66;ReadPosRankSum=0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SSPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461331    GT:AD:DP:GQ:PL    0/1:12,4:16:88.48:88,0,291
7    149530894    rs6960187    G    A    599.45    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=43;Dels=0.0;FS=1.204;HRun=0;HaplotypeScore=2.6421;MQ=58.81;MQ0=0;MQRankSum=0.838;QD=13.94;ReadPosRankSum=1.883;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF862;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223210    GT:AD:DP:GQ:PL    0/1:22,21:43:99:629,0,663
7    149556518    rs4725833    C    T    577.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=A375;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149556511_149556615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF862;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223210    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:610,45,0
7    149558409    rs2240361    G    C    658.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=L720;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149557472_149559583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF862;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223210    GT:AD:DP:GQ:PL    1/1:0,20:20:54.14:692,54,0
7    149559273    rs2074700    C    T    2416.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=L1008;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149557472_149559583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF862;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223210    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2450,184,0
7    149559465    rs2074701    C    T    758.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=G1072;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149557472_149559583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF862;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223210    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:791,63,0
7    149561049    rs3857764    C    G    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF862;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478024    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
7    149561323    rs62621237    G    A    163.87    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=16;Dels=0.0;FS=5.193;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.247;QD=10.24;ReadPosRankSum=0.38;SNPEFF_AMINO_ACID_CHANGE=E1154K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149561198_149564568;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF862;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223210    GT:AD:DP:GQ:PL    0/1:10,6:16:99:194,0,302
7    149572842    rs10240203    G    C    1755.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.48;MQ0=0;QD=39.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307445    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1788,132,0
7    149575638    rs6967083    T    G    73.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307445    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:106,9,0
7    149575707    rs6946997    C    G    525.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=55.38;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307445    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:558,45,0
7    149575725    rs6947011    C    T    754.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=55.76;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307445    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:787,60,0
7    149575747    rs5888369    TG    T    871.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=180.7406;IndelType=D;MQ=56.83;MQ0=0;QD=37.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307445    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:913,66,0
7    149575884    rs10246226    T    C    893.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.82;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307445    GT:AD:DP:GQ:PL    1/1:0,29:29:81.17:926,81,0
7    149576818    rs7785847    A    G    214.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_AMINO_ACID_CHANGE=S150;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_149576552_149577778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0E2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307445    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
7    149588126    rs115492015    G    A    56.93    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.86;MQ0=0;MQRankSum=0.895;QD=5.69;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-728K20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297369    GT:AD:DP:GQ:PL    0/1:7,3:10:86.92:87,0,191
7    149588429    rs4725317    G    A    335.99    MQFilter40    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=25.99;MQ0=36;MQRankSum=-1.722;QD=3.95;ReadPosRankSum=-0.281;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-728K20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297369    GT:AD:DP:GQ:PL    0/1:55,30:85:99:366,0,748
7    149588474    rs28688587    A    G    521.27    MQFilter40    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=49;Dels=0.0;FS=4.125;HRun=0;HaplotypeScore=0.0;MQ=37.18;MQ0=0;MQRankSum=-1.292;QD=10.64;ReadPosRankSum=0.885;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-728K20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297369    GT:AD:DP:GQ:PL    0/1:29,20:49:99:551,0,916
7    149589343    rs2626759    G    A    2066.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=31.39;MQ0=0;QD=26.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-728K20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297369    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2099,189,0
7    149589496    rs11428600    A    AC    2901.87    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.958;DB;DP=178;FS=17.375;HRun=0;HaplotypeScore=414.2653;IndelType=I;MQ=54.59;MQ0=6;MQRankSum=-0.081;QD=15.44;ReadPosRankSum=1.216;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-728K20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297369    GT:AD:DP:GQ:PL    0/1:101,87:178:99:2941,0,3361
7    149589599    rs4725318    C    A    307.86    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.901;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.98;MQ0=4;MQRankSum=-0.277;QD=6.28;ReadPosRankSum=0.108;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-728K20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297369    GT:AD:DP:GQ:PL    0/1:30,19:49:99:338,0,1015
7    149981830    rs4725334    T    G    565.97    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.224;DB;DP=58;Dels=0.0;FS=23.936;HRun=1;HaplotypeScore=0.734;MQ=49.48;MQ0=4;MQRankSum=-4.039;QD=9.76;ReadPosRankSum=0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477871    GT:AD:DP:GQ:PL    0/1:34,24:58:99:596,0,1037
7    149990080    rs149246619    C    T    1194.13    MQFilter40    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.677;DB;DP=199;Dels=0.0;FS=1.756;HRun=0;HaplotypeScore=4.2701;MQ=23.26;MQ0=30;MQRankSum=-1.285;QD=6.0;ReadPosRankSum=0.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477367    GT:AD:DP:GQ:PL    0/1:113,86:199:99:1224,0,1962
7    150027284    rs3800780    C    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463441    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    150027369    .    T    G    72.51    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9889;MQ=41.96;MQ0=0;MQRankSum=-0.747;QD=8.06;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463441    GT:AD:DP:GQ:PL    0/1:1,8:9:10.67:102,0,11
7    150033882    rs3735171    A    G    211.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.74;QD=17.65;ReadPosRankSum=1.294;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C7orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343855    GT:AD:DP:GQ:PL    0/1:3,9:12:93.54:242,0,94
7    150033986    .    C    G    55.15    QDFilter2    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.85;DP=46;Dels=0.0;FS=39.428;HRun=2;HaplotypeScore=0.0;MQ=44.5;MQ0=0;MQRankSum=-2.548;QD=1.2;ReadPosRankSum=-0.208;SNPEFF_AMINO_ACID_CHANGE=G12;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150033807_150035192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC61;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323078    GT:AD:DP:GQ:PL    0/1:27,19:46:85.14:85,0,789
7    150034184    rs3735170    T    C    630.31    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.671;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.309;QD=12.86;ReadPosRankSum=0.415;SNPEFF_AMINO_ACID_CHANGE=A78;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150033807_150035192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC61;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323078    GT:AD:DP:GQ:PL    0/1:24,25:49:99:660,0,654
7    150034378    rs3735169    A    G    328.26    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=30;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=0.712;QD=10.94;ReadPosRankSum=-1.264;SNPEFF_AMINO_ACID_CHANGE=N143S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150033807_150035192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC61;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323078    GT:AD:DP:GQ:PL    0/1:14,16:30:99:358,0,455
7    150037660    rs1047207    A    G    39.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=6.59;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=G13;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150037525_150037718;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RARRES2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223271    GT:AD:DP:GQ:PL    0/1:2,2:6:47.91:70,0,48
7    150068605    rs17173702    G    A    98.57    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=9.86;ReadPosRankSum=-2.383;SNPEFF_AMINO_ACID_CHANGE=R149H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150068317_150068771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461637    GT:AD:DP:GQ:PL    0/1:6,4:10:99:129,0,193
7    150068620    rs17173703    C    T    61.21    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.895;QD=6.12;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=A154V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150068317_150068771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461637    GT:AD:DP:GQ:PL    0/1:7,3:10:91.20:91,0,248
7    150068933    rs6722    T    C    193.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.54;QD=10.73;ReadPosRankSum=-1.721;SNPEFF_AMINO_ACID_CHANGE=A201;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150068317_150071133;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397281    GT:AD:DP:GQ:PL    0/1:11,7:18:99:223,0,397
7    150093701    rs940453    A    C    192.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=I44;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150093601_150095719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF775;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329630    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:226,18,0
7    150094851    rs13225910    A    G    215.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.92;SNPEFF_AMINO_ACID_CHANGE=T428A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150093601_150095719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF775;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329630    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:248,24,0
7    150170889    rs940454    A    T    86.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307271    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
7    150209733    rs111350935    G    C    508.35    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.585;DB;DP=37;Dels=0.0;FS=1.348;HRun=1;HaplotypeScore=0.0;MQ=58.62;MQ0=0;MQRankSum=-0.142;QD=13.74;ReadPosRankSum=-0.49;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313543    GT:AD:DP:GQ:PL    0/1:18,19:37:99:538,0,566
7    150210148    rs7784108    T    C    861.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.502;DB;DP=80;Dels=0.0;FS=0.855;HRun=1;HaplotypeScore=2.5659;MQ=55.6;MQ0=0;MQRankSum=1.633;QD=10.76;ReadPosRankSum=0.504;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313543    GT:AD:DP:GQ:PL    0/1:48,32:80:99:891,0,1511
7    150210213    rs76902898    G    GGCT    1771.30    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.066;DB;DP=68;FS=0.0;HRun=0;HaplotypeScore=261.7529;IndelType=I;MQ=51.53;MQ0=0;MQRankSum=-2.027;QD=23.94;ReadPosRankSum=-0.57;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313543    GT:AD:DP:GQ:PL    0/1:41,31:68:99:1810,0,1243
7    150216860    rs7783326    T    G    104.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313543    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:137,12,0
7    150217248    rs3735081    A    G    626.14    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.775;QD=18.42;ReadPosRankSum=-0.234;SNPEFF_AMINO_ACID_CHANGE=V62;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150217022_150218161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313543    GT:AD:DP:GQ:PL    0/1:12,22:34:99:656,0,354
7    150217309    rs3735080    C    T    524.37    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=36;Dels=0.0;FS=4.977;HRun=0;HaplotypeScore=0.8667;MQ=58.83;MQ0=0;MQRankSum=0.315;QD=14.57;ReadPosRankSum=-0.613;SNPEFF_AMINO_ACID_CHANGE=R83C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150217022_150218161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313543    GT:AD:DP:GQ:PL    0/1:17,19:36:99:554,0,510
7    150218007    rs141933762    ATAGT    A    317.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=66.3054;IndelType=D;MQ=53.89;MQ0=0;MQRankSum=-1.154;QD=22.69;ReadPosRankSum=-0.545;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313543    GT:AD:DP:GQ:PL    0/1:7,7:14:99:357,0,525
7    150280439    rs62502277    G    C    159.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=17.67;ReadPosRankSum=2.054;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC069304.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408216    GT:AD:DP:GQ:PL    0/1:3,6:9:98.61:189,0,99
7    150325175    rs13234724    C    T    1731.33    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=4.584;DB;DP=128;Dels=0.0;FS=2.401;HRun=0;HaplotypeScore=1.9663;MQ=59.16;MQ0=0;MQRankSum=2.509;QD=13.53;ReadPosRankSum=0.474;SNPEFF_AMINO_ACID_CHANGE=G171S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150322463_150325600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328902    GT:AD:DP:GQ:PL    0/1:67,61:128:99:1761,0,1722
7    150325372    rs62000976    G    A    896.02    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=3.341;DB;DP=54;Dels=0.0;FS=12.887;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.098;QD=16.59;ReadPosRankSum=0.08;SNPEFF_AMINO_ACID_CHANGE=S105L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150322463_150325600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIMAP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328902    GT:AD:DP:GQ:PL    0/1:25,29:54:99:926,0,680
7    150384193    .    C    CGTGT    327.27    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DP=26;FS=0.0;HRun=0;HaplotypeScore=129.8905;IndelType=I;MQ=47.24;MQ0=0;MQRankSum=0.067;QD=12.59;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GIMAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223293    GT:AD:DP:GQ:PL    0/1:17,7:26:31.28:366,0,31
7    150488616    rs2302479    A    G    366.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.07;DB;DP=25;Dels=0.0;FS=4.669;HRun=1;HaplotypeScore=1.5773;MQ=59.07;MQ0=0;MQRankSum=-0.155;QD=14.65;ReadPosRankSum=0.713;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326442    GT:AD:DP:GQ:PL    0/1:10,15:25:99:396,0,262
7    150489500    rs59010081    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326442    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
7    150490376    rs2072443    C    T    386.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.128;DB;DP=26;Dels=0.0;FS=1.906;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.256;QD=14.87;ReadPosRankSum=-0.974;SNPEFF_AMINO_ACID_CHANGE=A134T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150490176_150490403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326442    GT:AD:DP:GQ:PL    0/1:13,13:26:99:417,0,386
7    150490431    rs2072442    C    G    62.13    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.65;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326442    GT:AD:DP:GQ:PL    0/1:8,3:11:92.13:92,0,240
7    150491084    rs3173833    T    G    1062.83    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=84;Dels=0.0;FS=0.832;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.819;QD=12.65;ReadPosRankSum=0.775;SNPEFF_AMINO_ACID_CHANGE=S94R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150491049_150491159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326442    GT:AD:DP:GQ:PL    0/1:44,40:84:99:1093,0,1379
7    150493261    rs56296878    C    A    213.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326442    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
7    150493442    rs2075080    C    G    765.06    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.07;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.651;QD=15.3;ReadPosRankSum=-0.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326442    GT:AD:DP:GQ:PL    0/1:24,26:50:99:795,0,697
7    150498449    rs5888418    A    AG    242    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=26.1062;IndelType=I;MQ=61.78;MQ0=0;QD=40.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004103    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:284,18,0
7    150498508    rs1108578    G    T    101.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.34;MQ0=0;MQRankSum=1.368;QD=12.72;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004103    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,137
7    150498836    rs2075079    C    G    165.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004103    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
7    150499267    rs12668797    C    A    180.66    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=24;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=8.5959;MQ=56.04;MQ0=0;MQRankSum=-0.993;QD=7.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004103    GT:AD:DP:GQ:PL    0/1:11,13:24:99:211,0,210
7    150500455    rs741067    A    G    414.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475710    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:448,33,0
7    150500576    rs741065    A    G    137.08    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=17;Dels=0.0;FS=2.077;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=8.06;ReadPosRankSum=-0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475710    GT:AD:DP:GQ:PL    0/1:9,8:17:99:167,0,334
7    150500729    rs741064    A    G    1843.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=T122A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150500708_150500920;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000004103    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1876,138,0
7    150501038    rs741062    C    G    70.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.03;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468689    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,127
7    150501455    rs10378    G    T    750.46    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=55;Dels=0.0;FS=1.209;HRun=2;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.424;QD=13.64;ReadPosRankSum=0.043;SNPEFF_AMINO_ACID_CHANGE=L128F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150501450_150501560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461345    GT:AD:DP:GQ:PL    0/1:28,27:55:99:780,0,865
7    150501516    rs9088    A    G    2360.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_AMINO_ACID_CHANGE=T149A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150501450_150501560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461345    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2393,175,0
7    150501635    rs12112782    C    T    378.55    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.606;QD=15.14;ReadPosRankSum=1.645;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM176A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468689    GT:AD:DP:GQ:PL    0/1:13,12:25:99:409,0,400
7    150554887    rs2071514    G    A    349.44    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.287;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.45;QD=9.98;ReadPosRankSum=-1.387;SNPEFF_AMINO_ACID_CHANGE=A319;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150553824_150555128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437714    GT:AD:DP:GQ:PL    0/1:18,17:35:99:379,0,564
7    150555810    rs45455308    G    A    445.44    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.829;DB;DP=39;Dels=0.0;FS=6.287;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.548;QD=11.42;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460213    GT:AD:DP:GQ:PL    0/1:20,19:39:99:475,0,664
7    150555915    rs10893    A    G    794.30    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.205;DB;DP=50;Dels=0.0;FS=4.076;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.261;QD=15.89;ReadPosRankSum=-0.068;SNPEFF_AMINO_ACID_CHANGE=P421;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150555851_150556136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437714    GT:AD:DP:GQ:PL    0/1:22,28:50:99:824,0,687
7    150556002    rs1049748    T    C    1114.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=P100;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150555851_150556136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000487631    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1148,87,0
7    150557471    rs2071515    G    C    109.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=1.159;QD=12.15;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460213    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,172
7    150557622    rs12179    G    A    660.22    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.9;DB;DP=49;Dels=0.0;FS=2.968;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=2.059;QD=13.47;ReadPosRankSum=-0.817;SNPEFF_AMINO_ACID_CHANGE=S156;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150557589_150557670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000487631    GT:AD:DP:GQ:PL    0/1:26,23:49:99:690,0,715
7    150557665    rs1049793    C    G    1003.45    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2929;MQ=59.49;MQ0=0;MQRankSum=-0.86;QD=12.24;ReadPosRankSum=1.107;SNPEFF_AMINO_ACID_CHANGE=H171D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150557589_150557670;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000487631    GT:AD:DP:GQ:PL    0/1:45,37:82:99:1033,0,1264
7    150557748    rs3735076    G    A    966.21    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=71;Dels=0.0;FS=2.071;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.559;QD=13.61;ReadPosRankSum=0.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460213    GT:AD:DP:GQ:PL    0/1:38,33:71:99:996,0,976
7    150558366    rs12539    C    T    126.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=14.09;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460213    GT:AD:DP:GQ:PL    0/1:3,6:9:99:157,0,100
7    150645534    rs1805123    T    G    184.48    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.755;QD=9.71;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=K557T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150645532_150645631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330883    GT:AD:DP:GQ:PL    0/1:8,11:19:99:214,0,261
7    150645682    rs2968860    G    A    901.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430723    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:935,72,0
7    150647569    rs4725983    T    C    113.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262186    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:146,12,0
7    150648198    rs1137617    A    G    443.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=Y312;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150648009_150648208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330883    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:477,36,0
7    150648439    rs77018000    A    AG    756.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=3;HaplotypeScore=51.5914;IndelType=I;MQ=60.51;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262186    GT:AD:DP:GQ:PL    1/1:2,19:21:57.19:799,57,0
7    150648789    rs1805121    T    C    673.50    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.011;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=57.97;MQ0=0;MQRankSum=2.273;QD=14.64;ReadPosRankSum=-0.011;SNPEFF_AMINO_ACID_CHANGE=L224;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150648536_150648923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330883    GT:AD:DP:GQ:PL    0/1:21,25:46:99:703,0,559
7    150648986    rs2072411    G    C    380.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262186    GT:AD:DP:GQ:PL    1/1:0,13:13:33.07:413,33,0
7    150649531    rs1805120    G    A    402.36    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.766;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=12.19;ReadPosRankSum=0.271;SNPEFF_AMINO_ACID_CHANGE=F173;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150649513_150649941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330883    GT:AD:DP:GQ:PL    0/1:18,15:33:99:432,0,490
7    150649603    rs740952    G    A    787.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.591;DB;DP=58;Dels=0.0;FS=15.29;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.41;QD=13.58;ReadPosRankSum=-0.623;SNPEFF_AMINO_ACID_CHANGE=I149;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150649513_150649941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330883    GT:AD:DP:GQ:PL    0/1:29,29:58:99:818,0,724
7    150654622    rs72573482    A    AG    317.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=31.5597;IndelType=I;MQ=57.39;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262186    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:360,24,0
7    150695726    rs1549758    T    C    168.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.98;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.02;ReadPosRankSum=-0.663;SNPEFF_AMINO_ACID_CHANGE=D258;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150695627_150695768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297494    GT:AD:DP:GQ:PL    0/1:7,7:14:99:198,0,208
7    150696008    rs1007311    A    G    247.25    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.448;QD=9.51;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297494    GT:AD:DP:GQ:PL    0/1:12,14:26:99:277,0,330
7    150696111    rs1799983    T    G    855.31    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=83;Dels=0.0;FS=3.469;HRun=0;HaplotypeScore=0.6651;MQ=59.72;MQ0=0;MQRankSum=-1.2;QD=10.3;ReadPosRankSum=-0.666;SNPEFF_AMINO_ACID_CHANGE=D298E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150696034_150696173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297494    GT:AD:DP:GQ:PL    0/1:47,36:83:99:885,0,1378
7    150697333    rs1541861    C    A    86.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297494    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
7    150698879    rs1800780    A    G    373.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.377;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=13.33;ReadPosRankSum=-0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297494    GT:AD:DP:GQ:PL    0/1:14,14:28:99:403,0,461
7    150703915    rs2853796    G    T    117.52    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.055;DB;DP=33;Dels=0.0;FS=6.736;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.402;QD=3.56;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460603    GT:AD:DP:GQ:PL    0/1:25,8:33:99:148,0,828
7    150706383    rs753482    C    A    83.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.4;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010973.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377974    GT:AD:DP:GQ:PL    0/1:6,4:10:99:114,0,162
7    150707488    rs743507    C    T    76.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.69;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010973.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377974    GT:AD:DP:GQ:PL    0/1:3,3:6:90:106,0,90
7    150708089    rs891512    A    G    322.53    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.132;QD=16.98;ReadPosRankSum=0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010973.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377974    GT:AD:DP:GQ:PL    0/1:6,13:19:99:353,0,201
7    150713902    rs11393607    G    GC    407.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=23.2699;IndelType=I;MQ=60.0;MQ0=0;QD=40.78;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_150713903_150713908;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010973.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000377974    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:450,30,0
7    150715337    .    AC    A    113.98    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DP=10;FS=0.0;HRun=4;HaplotypeScore=38.6927;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=11.4;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010973.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545613    GT:AD:DP:GQ:PL    0/1:4,6:10:99:153,0,141
7    150715817    rs1835428    A    G    85.22    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=17.04;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=G536;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150715707_150716461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010973.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377974    GT:AD:DP:GQ:PL    0/1:1,4:5:14.64:115,0,15
7    150720902    rs13307588    A    G    718.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010973.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377974    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:751,57,0
7    150725722    rs2303922    A    C    355.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=22.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297504    GT:AD:DP:GQ:PL    1/1:0,16:16:33.05:388,33,0
7    150731338    rs2303923    G    C    1121.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=5.4766;MQ=58.78;MQ0=0;QD=29.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461373    GT:AD:DP:GQ:PL    1/1:0,37:38:93.25:1155,93,0
7    150731698    rs2303924    C    T    346.46    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.679;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.171;QD=11.18;ReadPosRankSum=0.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461373    GT:AD:DP:GQ:PL    0/1:17,14:31:99:376,0,459
7    150732630    rs41282730    G    A    571.09    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.561;DB;DP=46;Dels=0.0;FS=1.194;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=12.41;ReadPosRankSum=-0.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461373    GT:AD:DP:GQ:PL    0/1:22,23:46:99:601,0,599
7    150732812    rs17545756    C    T    433.16    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.905;QD=8.02;ReadPosRankSum=1.343;SNPEFF_AMINO_ACID_CHANGE=R216C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150732668_150732829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542328    GT:AD:DP:GQ:PL    0/1:37,17:54:99:463,0,1103
7    150733025    rs2303926    T    A    172.14    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.747;QD=6.38;ReadPosRankSum=0.858;SNPEFF_AMINO_ACID_CHANGE=R240;SNPEFF_CODON_CHANGE=cgT/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150732969_150733054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542328    GT:AD:DP:GQ:PL    0/1:20,7:27:99:202,0,614
7    150733115    rs76225344    G    A    165.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.0;MQ0=0;MQRankSum=1.179;QD=13.81;ReadPosRankSum=-1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461373    GT:AD:DP:GQ:PL    0/1:4,8:12:50.61:196,0,51
7    150733271    rs76802349    T    C    74.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=9.29;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461373    GT:AD:DP:GQ:PL    0/1:4,4:8:99:104,0,142
7    150738118    rs112744732    A    AGG    747.99    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.007;DB;DP=32;FS=4.316;HRun=4;HaplotypeScore=87.9011;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=-0.642;QD=23.37;ReadPosRankSum=-0.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477092    GT:AD:DP:GQ:PL    0/1:15,16:32:99:787,0,394
7    150739330    rs2303928    G    C    249.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470645    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
7    150742408    rs59397762    G    T    503.27    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.897;DB;DP=39;Dels=0.0;FS=3.297;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.969;QD=12.9;ReadPosRankSum=0.098;SNPEFF_AMINO_ACID_CHANGE=G622V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150742296_150742496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542328    GT:AD:DP:GQ:PL    0/1:20,19:39:99:533,0,651
7    150742700    rs891506    A    C    80.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=26.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297504    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
7    150747650    rs62001897    G    T    654.58    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.285;DB;DP=56;Dels=0.0;FS=3.715;HRun=0;HaplotypeScore=0.8321;MQ=59.59;MQ0=0;MQRankSum=-0.043;QD=11.69;ReadPosRankSum=-0.199;SNPEFF_AMINO_ACID_CHANGE=G256;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150747568_150747695;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297512    GT:AD:DP:GQ:PL    0/1:29,26:56:99:685,0,942
7    150747746    rs2288645    A    G    1842.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.6;MQ0=0;QD=31.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358849    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1875,147,0
7    150748771    rs58134191    T    C    79.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.9;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358849    GT:AD:DP:GQ:PL    0/1:2,3:5:63.98:109,0,64
7    150751590    rs2069459    C    A    734.69    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.379;DB;DP=66;Dels=0.0;FS=1.606;HRun=1;HaplotypeScore=1.8268;MQ=58.59;MQ0=0;MQRankSum=1.178;QD=11.13;ReadPosRankSum=-0.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297512    GT:AD:DP:GQ:PL    0/1:38,28:66:99:765,0,1284
7    150752066    rs891507    T    C    1647.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297512    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1680,123,0
7    150752608    rs2069456    T    G    614.45    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.168;DB;DP=47;Dels=0.0;FS=6.329;HRun=0;HaplotypeScore=0.8941;MQ=59.6;MQ0=0;MQRankSum=0.991;QD=13.07;ReadPosRankSum=-0.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297512    GT:AD:DP:GQ:PL    0/1:22,25:47:99:644,0,717
7    150761150    rs6464122    C    G    157.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466368    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
7    150761314    rs2303929    G    A    235.60    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=10.24;ReadPosRankSum=0.217;SNPEFF_AMINO_ACID_CHANGE=G12E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150761289_150761454;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000461735    GT:AD:DP:GQ:PL    0/1:13,10:23:99:266,0,412
7    150761548    rs2303930    A    G    103.12    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=21;Dels=0.0;FS=3.01;HRun=5;HaplotypeScore=0.0;MQ=55.45;MQ0=0;MQRankSum=-0.117;QD=4.91;ReadPosRankSum=-1.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466368    GT:AD:DP:GQ:PL    0/1:15,6:21:99:133,0,505
7    150761880    rs2303931    C    A    187.53    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.78;DB;DP=17;Dels=0.0;FS=4.467;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=11.03;ReadPosRankSum=-1.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463414    GT:AD:DP:GQ:PL    0/1:9,8:17:99:218,0,322
7    150763655    rs2229549    T    A    70.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=23.43;SNPEFF_AMINO_ACID_CHANGE=T128;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150763604_150763848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310317    GT:AD:DP:GQ:PL    1/1:0,3:3:9:102,9,0
7    150765065    rs2229550    T    C    699.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_AMINO_ACID_CHANGE=T275;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150764961_150765141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310317    GT:AD:DP:GQ:PL    1/1:0,25:25:63.17:732,63,0
7    150768786    rs2303937    G    A    672.40    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.554;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.32;QD=13.18;ReadPosRankSum=0.631;SNPEFF_AMINO_ACID_CHANGE=T652;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150768776_150768924;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310317    GT:AD:DP:GQ:PL    0/1:27,24:51:99:702,0,699
7    150773072    rs2303939    G    C    199.93    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.817;DB;DP=19;Dels=0.0;FS=2.199;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=10.52;ReadPosRankSum=0.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297530    GT:AD:DP:GQ:PL    0/1:12,7:19:99:230,0,391
7    150773807    rs67771563    A    T    79.94    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.685;DB;DP=17;Dels=0.0;FS=4.708;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.685;QD=4.7;ReadPosRankSum=-0.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459800    GT:AD:DP:GQ:PL    0/1:12,5:17:99:110,0,326
7    150814134    rs117148189    C    T    618.85    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.07;MQ0=0;MQRankSum=1.192;QD=11.25;ReadPosRankSum=0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335355    GT:AD:DP:GQ:PL    0/1:31,24:55:99:649,0,959
7    150825567    rs2288650    C    T    52.89    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.106;QD=4.81;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335367    GT:AD:DP:GQ:PL    0/1:8,3:11:82.89:83,0,250
7    150831431    rs41273644    C    T    98.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.968;QD=7.04;ReadPosRankSum=-1.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483971    GT:AD:DP:GQ:PL    0/1:8,6:14:99:129,0,230
7    150878260    rs2253592    C    G    151.96    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=13;Dels=0.0;FS=6.892;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=11.69;ReadPosRankSum=1.093;SNPEFF_AMINO_ACID_CHANGE=A275;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150878026_150878545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377867    GT:AD:DP:GQ:PL    0/1:7,6:13:99:182,0,199
7    150883761    rs2257090    C    T    229.57    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.393;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.741;QD=20.87;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275838    GT:AD:DP:GQ:PL    0/1:2,9:11:18.16:260,0,18
7    150887942    rs12703116    A    G    257.19    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.657;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=16.07;ReadPosRankSum=1.247;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275838    GT:AD:DP:GQ:PL    0/1:6,10:16:99:287,0,202
7    150888788    rs2288649    A    G    290.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275838    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:323,24,0
7    150889775    rs2243861    T    C    793.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377867    GT:AD:DP:GQ:PL    1/1:0,35:35:89.99:827,90,0
7    150889776    rs2243862    T    C    846.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.19;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377867    GT:AD:DP:GQ:PL    1/1:0,35:35:96:880,96,0
7    150890034    rs2435610    C    A    176.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=22.12;ReadPosRankSum=0.572;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    0/1:2,6:8:47.26:207,0,47
7    150890241    rs2487151    G    A    142.89    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.143;QD=10.99;ReadPosRankSum=-1.031;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    0/1:7,6:13:99:173,0,184
7    150892347    rs310590    C    G    328.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    1/1:0,11:11:33.05:362,33,0
7    150892599    rs310589    C    T    2353.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=35.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2386,178,0
7    150892950    rs310588    G    T    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    150893629    rs310586    T    C    836.07    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.596;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.577;QD=16.08;ReadPosRankSum=-0.028;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    0/1:24,28:52:99:866,0,775
7    150893971    rs138502819    T    C    112.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=12.54;ReadPosRankSum=0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    0/1:4,5:9:99:143,0,140
7    150894207    rs71533523    T    TA    2348.55    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.879;DB;DP=116;FS=3.566;HRun=1;HaplotypeScore=389.9074;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=0.322;QD=20.25;ReadPosRankSum=-0.886;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    0/1:56,60:116:99:2388,0,1502
7    150895164    rs12540488    G    C    35.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=IQCA1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453127    GT:AD:DP:GQ:PL    1/1:0,2:2:6:66,6,0
7    150912750    rs12538823    G    T    2144.42    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.606;DB;DP=134;Dels=0.0;FS=5.958;HRun=2;HaplotypeScore=0.5784;MQ=59.83;MQ0=0;MQRankSum=1.797;QD=15.88;ReadPosRankSum=-0.513;SNPEFF_AMINO_ACID_CHANGE=I490;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150912690_150912818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222388    GT:AD:DP:GQ:PL    0/1:63,71:134:99:2174,0,1910
7    150912786    rs7786151    T    C    1391.74    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.385;DB;DP=85;Dels=0.0;FS=10.039;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=16.37;ReadPosRankSum=0.598;SNPEFF_AMINO_ACID_CHANGE=S478;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150912690_150912818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222388    GT:AD:DP:GQ:PL    0/1:37,48:85:99:1422,0,1174
7    150915102    rs79537035    C    T    185.78    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=57.77;MQ0=0;MQRankSum=-1.555;QD=9.78;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468073    GT:AD:DP:GQ:PL    0/1:11,8:19:99:216,0,333
7    150915533    rs3800793    C    T    32.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.42;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468073    GT:AD:DP:GQ:PL    0/1:3,2:5:62.10:62,0,111
7    150915545    rs13227935    G    A    77.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.45;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468073    GT:AD:DP:GQ:PL    0/1:2,3:5:58.88:107,0,59
7    150916033    rs12113924    T    G    458.99    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.393;DB;DP=45;Dels=0.0;FS=9.171;HRun=1;HaplotypeScore=1.1567;MQ=58.66;MQ0=0;MQRankSum=-0.222;QD=10.2;ReadPosRankSum=0.691;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441774    GT:AD:DP:GQ:PL    0/1:28,17:45:99:489,0,917
7    150916114    rs140020346    CAGG    C    2165.69    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=5.213;DB;DP=100;FS=0.0;HRun=0;HaplotypeScore=430.7027;IndelType=D;MQ=56.27;MQ0=0;MQRankSum=-1.131;QD=21.66;ReadPosRankSum=-0.623;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441774    GT:AD:DP:GQ:PL    0/1:47,53:100:99:2205,0,2687
7    150916228    rs6949587    G    A    1424.18    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.376;DB;DP=95;Dels=0.0;FS=0.857;HRun=0;HaplotypeScore=0.0;MQ=57.02;MQ0=0;MQRankSum=-1.092;QD=14.99;ReadPosRankSum=0.13;SNPEFF_AMINO_ACID_CHANGE=Y313;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150916150_150916245;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222388    GT:AD:DP:GQ:PL    0/1:45,50:95:99:1454,0,1387
7    150918914    rs4726007    G    C    381.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=31.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441774    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:415,36,0
7    150921950    rs6464133    A    G    1885.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=L93;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150921862_150922074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222388    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1919,144,0
7    150923240    rs12532489    C    T    195.96    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=58.71;MQ0=0;MQRankSum=0.529;QD=10.89;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477252    GT:AD:DP:GQ:PL    0/1:9,8:18:99:226,0,279
7    150930965    rs2252694    C    T    259.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_150929585_150931360;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000035307    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
7    150931268    rs2608293    C    G    635.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=40;Dels=0.0;FS=2.887;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.627;QD=15.88;ReadPosRankSum=-1.523;SNPEFF_AMINO_ACID_CHANGE=S49;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150931172_150931360;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000495645    GT:AD:DP:GQ:PL    0/1:16,24:40:99:665,0,464
7    150934975    rs2487154    C    G    452.84    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.766;DB;DP=26;Dels=0.0;FS=3.769;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.398;QD=17.42;ReadPosRankSum=1.028;SNPEFF_AMINO_ACID_CHANGE=A501;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150934460_150935905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000495645    GT:AD:DP:GQ:PL    0/1:10,16:26:99:483,0,310
7    150935430    rs3748098    G    C    30.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=5.03;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=G653A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_150934460_150935905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000495645    GT:AD:DP:GQ:PL    0/1:3,3:6:60.19:60,0,74
7    150936052    rs1870238    C    G    405.53    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=22;Dels=0.0;FS=4.191;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.905;QD=18.43;ReadPosRankSum=0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000035307    GT:AD:DP:GQ:PL    0/1:8,13:22:99:436,0,254
7    150937377    rs140931511    C    CG    772.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=40.3264;IndelType=I;MQ=60.57;MQ0=0;QD=40.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000035307    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:815,57,0
7    150939193    rs4725398    A    G    844.24    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=46;Dels=0.0;FS=3.465;HRun=0;HaplotypeScore=4.1265;MQ=60.0;MQ0=0;MQRankSum=-0.637;QD=18.35;ReadPosRankSum=0.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000035307    GT:AD:DP:GQ:PL    0/1:17,29:46:99:874,0,546
7    150939359    rs219227    C    T    1618.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000035307    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1652,120,0
7    150939396    rs219228    C    A    1203.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000035307    GT:AD:DP:GQ:PL    1/1:0,30:30:90.30:1236,90,0
7    150940657    rs122815    T    C    292.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000035307    GT:AD:DP:GQ:PL    1/1:0,10:10:27.05:326,27,0
7    150945434    rs219234    C    G    844.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMARCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262188    GT:AD:DP:GQ:PL    1/1:0,27:27:72.18:877,72,0
7    150945745    .    C    T    113.87    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DP=17;Dels=0.0;FS=4.523;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.251;QD=6.7;ReadPosRankSum=2.462;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_150945571_150946059;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMARCD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262188    GT:AD:DP:GQ:PL    0/1:11,6:17:99:144,0,388
7    151045989    rs400256    C    G    108.36    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.67;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:138,0,26
7    151046022    rs421635    A    G    171.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=17.15;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    0/1:4,6:10:99:202,0,129
7    151048484    rs449081    G    A    1036.14    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=4.369;DB;DP=79;Dels=0.0;FS=3.426;HRun=0;HaplotypeScore=1.8401;MQ=59.71;MQ0=0;MQRankSum=-1.218;QD=13.12;ReadPosRankSum=2.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    0/1:39,40:79:99:1066,0,1078
7    151049818    rs444648    C    T    268.02    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.914;QD=15.77;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    0/1:8,9:17:99:298,0,277
7    151050158    rs367547    T    C    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
7    151053043    rs446886    A    G    1393.99    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=92;Dels=0.0;FS=1.858;HRun=1;HaplotypeScore=2.3149;MQ=59.5;MQ0=0;MQRankSum=-1.134;QD=15.15;ReadPosRankSum=-1.302;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470229    GT:AD:DP:GQ:PL    0/1:42,49:92:99:1424,0,1318
7    151064064    rs386956    C    T    1291.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.419;DB;DP=77;Dels=0.0;FS=0.931;HRun=0;HaplotypeScore=1.367;MQ=59.7;MQ0=0;MQRankSum=0.558;QD=16.77;ReadPosRankSum=-1.1;SNPEFF_AMINO_ACID_CHANGE=Y280;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151064025_151064211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    0/1:35,42:77:99:1321,0,1067
7    151064305    rs367191    A    G    737.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.326;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3782;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=16.04;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    0/1:23,23:46:99:768,0,766
7    151064422    rs367567    A    G    31.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    0/1:2,2:4:61.89:62,0,69
7    151074015    rs2240629    G    C    164.15    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=12;Dels=0.0;FS=3.01;HRun=2;HaplotypeScore=0.7887;MQ=56.04;MQ0=0;MQRankSum=2.383;QD=13.68;ReadPosRankSum=1.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334493    GT:AD:DP:GQ:PL    0/1:5,6:12:93.12:194,0,93
7    151074296    rs2159158    A    G    1316.72    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.263;DB;DP=70;Dels=0.0;FS=5.48;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.165;QD=18.81;ReadPosRankSum=-1.686;SNPEFF_AMINO_ACID_CHANGE=A597;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151074133_151075535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413040    GT:AD:DP:GQ:PL    0/1:20,50:70:99:1347,0,495
7    151078735    rs4141455    A    G    31.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.84;SNPEFF_AMINO_ACID_CHANGE=C182R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151078207_151078832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR86;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000477459    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
7    151078845    rs4141454    G    A    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355851    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
7    151097323    rs11767693    A    G    373.85    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.593;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=10.1;ReadPosRankSum=-1.346;SNPEFF_AMINO_ACID_CHANGE=H56;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151097186_151097327;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR86;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334493    GT:AD:DP:GQ:PL    0/1:22,15:37:99:404,0,782
7    151135457    rs2074999    T    C    121.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7998;MQ=57.66;MQ0=0;MQRankSum=0.336;QD=12.18;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRYGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337323    GT:AD:DP:GQ:PL    0/1:5,5:10:99:152,0,164
7    151135503    rs12539860    C    T    61.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.537;QD=10.2;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CRYGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337323    GT:AD:DP:GQ:PL    0/1:3,3:6:56.19:91,0,56
7    151164348    rs17635434    G    A    102.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=2.383;QD=10.29;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470072    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,217
7    151168415    rs79878093    CAAT    C    962.33    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=5.387;DB;DP=53;FS=7.863;HRun=0;HaplotypeScore=206.6407;IndelType=D;MQ=59.72;MQ0=0;MQRankSum=0.348;QD=18.16;ReadPosRankSum=-0.384;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470370    GT:AD:DP:GQ:PL    0/1:29,24:53:99:1001,0,1749
7    151168534    rs6956899    G    A    1681.20    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.501;DB;DP=139;Dels=0.0;FS=2.178;HRun=0;HaplotypeScore=1.399;MQ=59.67;MQ0=0;MQRankSum=-0.749;QD=12.09;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262187    GT:AD:DP:GQ:PL    0/1:77,62:139:99:1711,0,2179
7    151168830    rs875588    C    T    109.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.29;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262187    GT:AD:DP:GQ:PL    0/1:2,4:6:63.16:140,0,63
7    151174286    rs2074997    C    A    196.88    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.91;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=13.13;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262187    GT:AD:DP:GQ:PL    0/1:8,7:15:99:227,0,282
7    151254175    rs8961    T    C    1142.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485183    GT:AD:DP:GQ:PL    1/1:0,35:35:87.26:1176,87,0
7    151254445    rs764801    T    C    910.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=29.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485183    GT:AD:DP:GQ:PL    1/1:0,31:31:81.21:944,81,0
7    151254462    rs764800    G    A    859.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=39.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485183    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:893,66,0
7    151254576    rs6945103    T    C    155.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485183    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
7    151261040    rs28763999    C    T    386.96    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.07;DB;DP=22;Dels=0.0;FS=3.067;HRun=1;HaplotypeScore=1.9312;MQ=58.95;MQ0=0;MQRankSum=0.935;QD=17.59;ReadPosRankSum=-0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476632    GT:AD:DP:GQ:PL    0/1:9,13:22:99:417,0,313
7    151261450    rs17642575    T    C    136.93    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.12;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476632    GT:AD:DP:GQ:PL    0/1:3,5:8:99:167,0,103
7    151262305    rs2302532    A    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476632    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
7    151265714    rs2241053    C    T    171.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.71;QD=12.26;ReadPosRankSum=-0.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476632    GT:AD:DP:GQ:PL    0/1:8,6:14:99:202,0,287
7    151267397    rs2302530    G    A    746.45    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=2.375;QD=17.77;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491938    GT:AD:DP:GQ:PL    0/1:19,23:42:99:776,0,676
7    151292395    rs35348247    A    AT    488.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=22.5379;IndelType=I;MQ=61.78;MQ0=0;QD=40.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287878    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:530,36,0
7    151432869    rs1547470    T    C    243.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287878    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
7    151573731    rs66628686    G    A    37.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=9;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.9665;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=4.15;ReadPosRankSum=1.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474383    GT:AD:DP:GQ:PL    0/1:4,4:9:67.36:67,0,133
7    151668225    rs1919521    A    T    786.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.038;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.9966;MQ=58.13;MQ0=0;MQRankSum=-1.001;QD=31.45;ReadPosRankSum=0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392800    GT:AD:DP:GQ:PL    1/1:4,21:25:63.20:819,63,0
7    151680072    rs6960270    T    C    900.52    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.236;DB;DP=63;Dels=0.0;FS=1.233;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=1.328;QD=14.29;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=C124R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151680071_151680237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392800    GT:AD:DP:GQ:PL    0/1:33,30:63:99:931,0,954
7    151680175    rs35682935    C    T    1417.73    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.295;DB;DP=109;Dels=0.0;FS=1.575;HRun=0;HaplotypeScore=0.9469;MQ=58.98;MQ0=0;MQRankSum=-0.216;QD=13.01;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=T158M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151680071_151680237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392800    GT:AD:DP:GQ:PL    0/1:59,50:109:99:1448,0,1647
7    151680268    rs147547437    TTTG    T    356.99    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=3.933;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=159.9816;IndelType=D;MQ=58.25;MQ0=0;MQRankSum=-0.202;QD=8.92;ReadPosRankSum=-0.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468278    GT:AD:DP:GQ:PL    0/1:29,11:40:99:396,0,1023
7    151684168    rs4726127    C    A    665.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468278    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:699,51,0
7    151791090    rs35304446    C    A    37.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_7_151791051_151791168;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNT11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419245    GT:AD:DP:GQ:PL    0/1:3,2:5:67.83:68,0,108
7    151791170    rs17173334    T    G    223.91    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=58.99;MQ0=0;MQRankSum=-0.678;QD=9.74;ReadPosRankSum=0.678;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNT11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000419245    GT:AD:DP:GQ:PL    0/1:15,8:23:99:254,0,527
7    151818777    rs967093    T    C    1011.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=55.21;MQ0=0;QD=28.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491061    GT:AD:DP:GQ:PL    1/1:0,35:35:90.25:1044,90,0
7    151842397    rs2240819    C    T    568.25    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.894;QD=14.21;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:19,21:40:99:598,0,579
7    151847946    rs3757422    G    A    252.60    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.588;QD=14.86;ReadPosRankSum=1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418061    GT:AD:DP:GQ:PL    0/1:9,8:17:99:283,0,267
7    151848318    rs3757421    C    T    82.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418061    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:112,0,21
7    151866389    rs3837083    GA    G    431.38    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=4.097;DB;DP=39;FS=0.0;HRun=6;HaplotypeScore=97.0085;IndelType=D;MQ=60.52;MQ0=0;MQRankSum=1.946;QD=11.06;ReadPosRankSum=-0.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:21,18:39:99:470,0,575
7    151873853    rs6464211    C    T    511.72    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=34;Dels=0.0;FS=3.093;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=15.05;ReadPosRankSum=-0.565;SNPEFF_AMINO_ACID_CHANGE=Q2895;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151873276_151875095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:14,20:34:99:542,0,450
7    151874498    rs10252263    C    T    791.46    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=67;Dels=0.0;FS=4.877;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=2.655;QD=11.81;ReadPosRankSum=-0.96;SNPEFF_AMINO_ACID_CHANGE=Q2680;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151873276_151875095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:35,32:67:99:821,0,1114
7    151882622    rs147937873    TAG    T    210.18    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.457;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=60.8729;IndelType=D;MQ=49.28;MQ0=3;MQRankSum=-2.694;QD=9.14;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:14,9:20:99:249,0,671
7    151882735    rs62481492    G    A    59.79    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.65;DB;DP=20;Dels=0.0;FS=2.754;HRun=1;HaplotypeScore=0.0;MQ=53.56;MQ0=1;MQRankSum=-1.35;QD=2.99;ReadPosRankSum=1.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:15,5:20:89.78:90,0,490
7    151884607    rs3800834    C    T    469.42    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.378;DB;DP=32;Dels=0.0;FS=1.556;HRun=2;HaplotypeScore=1.6617;MQ=58.69;MQ0=0;MQRankSum=0.529;QD=14.67;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:15,17:32:99:499,0,493
7    151885070    rs6963460    A    G    41.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=10.45;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:72,0,33
7    151896573    rs3837082    G    GGTTA    1927.02    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.733;DB;DP=58;FS=0.0;HRun=0;HaplotypeScore=199.7564;IndelType=I;MQ=57.02;MQ0=0;MQRankSum=-0.604;QD=33.22;ReadPosRankSum=1.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:31,27:58:99:1966,0,1224
7    151902343    rs10265729    G    A    231.97    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.429;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.32;MQ0=0;MQRankSum=0.099;QD=10.54;ReadPosRankSum=0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:12,10:22:99:262,0,419
7    151926977    rs62481501    A    G    561.77    MQFilter40    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.849;DB;DP=250;DS;Dels=0.0;FS=9.453;HRun=0;HaplotypeScore=2.5326;MQ=26.58;MQ0=33;MQRankSum=2.804;QD=2.25;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:208,42:250:99:592,0,3466
7    151927021    rs28522267    C    A    1757.98    HaplotypeScoreFilter13;MQFilter40    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=4.13;DB;DP=250;DS;Dels=0.0;FS=4.007;HRun=1;HaplotypeScore=13.5447;MQ=27.04;MQ0=33;MQRankSum=-6.745;QD=7.03;ReadPosRankSum=-0.68;SNPEFF_AMINO_ACID_CHANGE=C988F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151927008_151927112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:98,152:250:99:1788,0,2280
7    151927026    rs28439884    T    C    1678.59    HaplotypeScoreFilter13;MQFilter40    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.099;DB;DP=250;DS;Dels=0.0;FS=2.668;HRun=0;HaplotypeScore=13.5921;MQ=27.14;MQ0=33;MQRankSum=-6.55;QD=6.71;ReadPosRankSum=-0.234;SNPEFF_AMINO_ACID_CHANGE=P986;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151927008_151927112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:99,151:250:99:1709,0,2318
7    151927127    rs76065716    A    G    1553.14    MQFilter40    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=5.356;DB;DP=221;DS;Dels=0.0;FS=7.165;HRun=0;HaplotypeScore=1.748;MQ=24.81;MQ0=21;MQRankSum=-2.977;QD=7.03;ReadPosRankSum=-2.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:101,120:221:99:1583,0,1909
7    151932756    rs116752247    A    T    205.74    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.1827;MQ=42.4;MQ0=0;MQRankSum=-2.677;QD=8.95;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:12,11:23:99:236,0,365
7    151932774    rs78094104    A    G    376.08    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.728;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6666;MQ=42.27;MQ0=0;MQRankSum=-3.879;QD=9.64;ReadPosRankSum=-1.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:14,25:39:99:406,0,443
7    151932808    rs149331562    TTA    T    512.33    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=2.299;DB;DP=75;FS=0.0;HRun=0;HaplotypeScore=667.5253;IndelType=D;MQ=39.88;MQ0=0;MQRankSum=-0.485;QD=6.57;ReadPosRankSum=3.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:58,20:75:99:551,0,2821
7    151932819    rs80348298    T    A    456.63    HaplotypeScoreFilter13    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=84;Dels=0.0;FS=7.051;HRun=0;HaplotypeScore=67.7166;MQ=40.48;MQ0=0;MQRankSum=-3.22;QD=5.44;ReadPosRankSum=-1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:61,23:84:99:487,0,1922
7    151932824    rs78860638    A    T    854.87    HaplotypeScoreFilter13    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.987;DB;DP=88;Dels=0.0;FS=6.079;HRun=1;HaplotypeScore=39.7555;MQ=40.79;MQ0=0;MQRankSum=-2.394;QD=9.71;ReadPosRankSum=2.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:52,36:88:99:885,0,1447
7    151932830    .    A    T    52.06    HaplotypeScoreFilter13;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.368;DP=92;Dels=0.0;FS=4.915;HRun=1;HaplotypeScore=17.3889;MQ=40.63;MQ0=0;MQRankSum=-2.368;QD=0.57;ReadPosRankSum=-1.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:81,11:92:82.05:82,0,2457
7    151932846    rs111513250    T    C    33.91    MQFilter40;QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=114;Dels=0.0;FS=2.191;HRun=0;HaplotypeScore=1.5767;MQ=38.69;MQ0=1;MQRankSum=-1.999;QD=0.3;ReadPosRankSum=0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:102,12:114:63.90:64,0,2748
7    151932876    rs74977767    G    T    514.94    MQFilter40    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.35;DB;DP=122;Dels=0.0;FS=5.896;HRun=0;HaplotypeScore=2.8098;MQ=38.16;MQ0=6;MQRankSum=-4.334;QD=4.22;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:82,40:122:99:545,0,2160
7    151932897    rs73728782    C    A    46.33    MQFilter40;QDFilter2    AB=0.881;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.051;DB;DP=118;Dels=0.0;FS=11.455;HRun=0;HaplotypeScore=0.0;MQ=38.97;MQ0=7;MQRankSum=-1.08;QD=0.39;ReadPosRankSum=1.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:104,14:118:76.32:76,0,2556
7    151932908    rs112326730    T    C    825.66    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.523;DB;DP=116;Dels=0.0;FS=39.755;HRun=0;HaplotypeScore=4.9462;MQ=40.08;MQ0=8;MQRankSum=-7.02;QD=7.12;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=L921;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151932902_151933018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:69,47:116:99:856,0,1664
7    151932945    .    C    T    408.71    MQFilter40    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=2.915;DP=104;Dels=0.0;FS=7.805;HRun=1;HaplotypeScore=8.2964;MQ=39.49;MQ0=9;MQRankSum=-4.062;QD=3.93;ReadPosRankSum=-1.614;SNPEFF_AMINO_ACID_CHANGE=R909K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151932902_151933018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:70,34:104:99:439,0,1922
7    151932965    rs142922667    C    T    271.91    MQFilter40    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=3.682;DB;DP=87;Dels=0.0;FS=5.86;HRun=0;HaplotypeScore=4.6787;MQ=39.44;MQ0=6;MQRankSum=-3.276;QD=3.13;ReadPosRankSum=1.074;SNPEFF_AMINO_ACID_CHANGE=S902;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151932902_151933018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:59,28:87:99:302,0,1506
7    151933033    rs113470386    G    A    100.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.681;DB;DP=36;Dels=0.0;FS=5.869;HRun=0;HaplotypeScore=0.0;MQ=44.88;MQ0=4;MQRankSum=-4.69;QD=2.79;ReadPosRankSum=-0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:20,16:36:99:130,0,742
7    151933058    .    A    C    86.83    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.517;DP=31;Dels=0.0;FS=9.394;HRun=2;HaplotypeScore=6.4369;MQ=46.07;MQ0=3;MQRankSum=-4.339;QD=2.8;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:18,13:31:99:117,0,636
7    151933145    rs76725153    G    A    502.12    HaplotypeScoreFilter13    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=79;Dels=0.0;FS=5.4;HRun=1;HaplotypeScore=16.3618;MQ=48.54;MQ0=1;MQRankSum=-7.3;QD=6.36;ReadPosRankSum=-3.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:44,35:79:99:532,0,1487
7    151933152    .    C    T    189.17    HaplotypeScoreFilter13    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.026;DP=92;Dels=0.0;FS=2.248;HRun=2;HaplotypeScore=16.6866;MQ=47.34;MQ0=5;MQRankSum=-3.677;QD=2.06;ReadPosRankSum=-1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:73,19:92:99:219,0,2121
7    151933173    .    C    A    665.60    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=6.324;DP=137;Dels=0.0;FS=6.673;HRun=3;HaplotypeScore=4.5488;MQ=45.23;MQ0=25;MQRankSum=-8.916;QD=4.86;ReadPosRankSum=2.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:68,69:137:99:696,0,2166
7    151933181    rs184916225    C    G    1145.91    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.385;DB;DP=167;Dels=0.01;FS=1.96;HRun=0;HaplotypeScore=3.5594;MQ=44.11;MQ0=25;MQRankSum=-10.243;QD=6.82;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:73,94:167:99:1176,0,2339
7    151933217    rs73481043    C    A    2287.34    MQRankSumFilter12_5    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DB;DP=250;DS;Dels=0.0;FS=6.799;HRun=2;HaplotypeScore=0.7887;MQ=42.57;MQ0=28;MQRankSum=-12.741;QD=9.15;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:95,155:250:99:2317,0,2805
7    151933251    rs75646957    T    C    2017.32    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.112;DB;DP=233;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2386;MQ=42.85;MQ0=26;MQRankSum=-12.354;QD=8.66;ReadPosRankSum=2.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:92,141:233:99:2047,0,2832
7    151933302    rs78322652    T    C    853.55    HaplotypeScoreFilter13    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.406;DB;DP=147;DS;Dels=0.0;FS=12.148;HRun=0;HaplotypeScore=27.0004;MQ=43.66;MQ0=17;MQRankSum=-9.793;QD=5.81;ReadPosRankSum=2.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:67,80:147:99:884,0,2261
7    151933303    .    G    A    53.32    HaplotypeScoreFilter13;QDFilter2    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.911;DP=146;DS;Dels=0.0;FS=9.1;HRun=0;HaplotypeScore=26.0425;MQ=43.8;MQ0=17;MQRankSum=-6.092;QD=0.37;ReadPosRankSum=2.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:109,37:146:83.31:83,0,3106
7    151933333    rs148887101    A    G    918.75    HaplotypeScoreFilter13    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=2.807;DB;DP=135;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=49.9015;MQ=42.19;MQ0=21;MQRankSum=6.248;QD=6.81;ReadPosRankSum=1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:103,32:135:99:949,0,1737
7    151933339    rs79813379    C    T    534.29    HaplotypeScoreFilter13    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=7.276;DB;DP=130;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=49.2364;MQ=42.87;MQ0=20;MQRankSum=-8.973;QD=4.11;ReadPosRankSum=-1.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:60,70:130:99:564,0,1769
7    151933375    rs62481508    A    G    606.71    HaplotypeScoreFilter13    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=1.939;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.1377;MQ=47.05;MQ0=9;MQRankSum=2.781;QD=8.79;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:50,19:69:99:637,0,929
7    151935688    .    CT    C    95.12    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=2.531;DP=20;FS=0.0;HRun=3;HaplotypeScore=49.4315;IndelType=D;MQ=49.44;MQ0=0;MQRankSum=-3.23;QD=4.32;ReadPosRankSum=1.484;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:16,6:20:99:134,0,589
7    151935853    rs4024420    T    C    551.70    FSFilter60    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.854;DB;DP=106;Dels=0.0;FS=60.365;HRun=1;HaplotypeScore=2.5975;MQ=42.26;MQ0=1;MQRankSum=-8.06;QD=5.2;ReadPosRankSum=1.738;SNPEFF_AMINO_ACID_CHANGE=E864G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151935792_151935911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:67,39:106:99:582,0,2155
7    151935910    rs4024419    C    T    120.20    QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=92;Dels=0.0;FS=10.353;HRun=0;HaplotypeScore=6.759;MQ=45.93;MQ0=0;MQRankSum=-6.332;QD=1.31;ReadPosRankSum=0.752;SNPEFF_AMINO_ACID_CHANGE=G845E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151935792_151935911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:74,18:92:99:150,0,2250
7    151935992    rs2360904    A    G    58.95    MQFilter40;QDFilter2    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.805;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=36.0;MQ0=0;MQRankSum=-5.256;QD=1.4;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:23,19:42:88.95:89,0,745
7    151945007    rs137949498    C    T    1327.82    PASS    AB=0.665;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.706;DB;DP=161;Dels=0.0;FS=3.156;HRun=0;HaplotypeScore=1.6553;MQ=42.81;MQ0=24;MQRankSum=0.405;QD=8.25;ReadPosRankSum=-1.531;SNPEFF_AMINO_ACID_CHANGE=G838S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151944987_151945705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:107,54:161:99:1358,0,2396
7    151945071    .    G    GT    716.94    PASS    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.199;DP=241;FS=14.639;HRun=1;HaplotypeScore=865.2591;IndelType=I;MQ=48.16;MQ0=0;MQRankSum=0.314;QD=2.96;ReadPosRankSum=0.233;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_7_151944987_151945705;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:209,33:241:99:756,0,7105
7    151945101    rs3896406    G    C    630.29    PASS    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.032;DB;DP=248;DS;Dels=0.0;FS=16.446;HRun=0;HaplotypeScore=3.8181;MQ=45.34;MQ0=0;MQRankSum=-9.241;QD=2.54;ReadPosRankSum=0.95;SNPEFF_AMINO_ACID_CHANGE=S806;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151944987_151945705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:198,50:248:99:660,0,6286
7    151945140    rs57648310    C    T    228.88    QDFilter2    AB=0.881;AC=1;AF=0.50;AN=2;BaseQRankSum=1.566;DB;DP=237;DS;Dels=0.0;FS=14.536;HRun=0;HaplotypeScore=3.3178;MQ=42.34;MQ0=8;MQRankSum=-0.625;QD=0.97;ReadPosRankSum=0.355;SNPEFF_AMINO_ACID_CHANGE=S793;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151944987_151945705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:208,28:237:99:259,0,5354
7    151945167    rs2537264    G    T    547.95    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.619;DB;DP=199;DS;Dels=0.0;FS=15.638;HRun=0;HaplotypeScore=5.2298;MQ=41.44;MQ0=24;MQRankSum=-1.105;QD=2.75;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=S784;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151944987_151945705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:158,41:199:99:578,0,4009
7    151945204    rs4024453    G    A    344.62    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.268;DB;DP=163;DS;Dels=0.0;FS=18.946;HRun=1;HaplotypeScore=5.0632;MQ=40.12;MQ0=39;MQRankSum=-6.429;QD=2.11;ReadPosRankSum=-2.024;SNPEFF_AMINO_ACID_CHANGE=S772L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151944987_151945705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:96,66:163:99:375,0,3167
7    151949068    rs3735156    C    G    242.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.769;DB;DP=33;Dels=0.0;FS=7.877;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.172;QD=7.35;ReadPosRankSum=-1.012;SNPEFF_AMINO_ACID_CHANGE=R526P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151949024_151949175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:22,11:33:99:273,0,681
7    151962077    rs62478355    C    G    116.13    MQFilter40;QDFilter2    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.224;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.6818;MQ=37.98;MQ0=6;MQRankSum=-4.681;QD=1.4;ReadPosRankSum=-4.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:52,30:83:99:146,0,1336
7    151962128    .    G    A    127.08    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=2.686;DP=250;DS;Dels=0.0;FS=2.368;HRun=1;HaplotypeScore=15.7794;MQ=34.82;MQ0=8;MQRankSum=-1.991;QD=0.51;ReadPosRankSum=1.068;SNPEFF_AMINO_ACID_CHANGE=N393;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151962123_151962294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:220,30:250:99:157,0,5101
7    151962176    rs62478356    T    A    610.94    HaplotypeScoreFilter13;MQFilter40    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=5.345;DB;DP=242;DS;Dels=0.0;FS=12.833;HRun=2;HaplotypeScore=14.3622;MQ=36.06;MQ0=2;MQRankSum=-1.368;QD=2.52;ReadPosRankSum=-0.693;SNPEFF_AMINO_ACID_CHANGE=P377;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151962123_151962294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:190,52:242:99:641,0,4759
7    151970672    rs59427422    A    T    1301.56    PASS    AB=0.239;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.763;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9932;MQ=45.87;MQ0=6;MQRankSum=-2.697;QD=19.43;ReadPosRankSum=-1.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:16,51:67:99:1332,0,487
7    151970695    .    A    T    232.15    PASS    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.382;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9984;MQ=46.11;MQ0=7;MQRankSum=1.37;QD=2.23;ReadPosRankSum=0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:89,15:104:99:262,0,2658
7    151970729    rs35786451    A    T    248.16    QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=1.971;DB;DP=190;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.8121;MQ=47.05;MQ0=11;MQRankSum=4.201;QD=1.31;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:170,20:190:99:278,0,4739
7    151970797    rs141993954    A    T    462.65    QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=2.145;DB;DP=250;DS;Dels=0.0;FS=1.679;HRun=0;HaplotypeScore=2.5929;MQ=45.56;MQ0=21;MQRankSum=0.364;QD=1.85;ReadPosRankSum=0.775;SNPEFF_AMINO_ACID_CHANGE=P335;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151970790_151970952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:218,32:250:99:493,0,5514
7    151970856    rs10454320    T    A    4568.56    HaplotypeScoreFilter13    AB=0.191;AC=1;AF=0.50;AN=2;BaseQRankSum=2.64;DB;DP=238;DS;Dels=0.0;FS=8.336;HRun=0;HaplotypeScore=14.8613;MQ=43.0;MQ0=11;MQRankSum=-6.706;QD=19.2;ReadPosRankSum=0.826;SNPEFF_AMINO_ACID_CHANGE=T316S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151970790_151970952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:45,190:238:99:4569,0,1089
7    151970931    rs56850341    G    A    2681.18    MQFilter40    AB=0.225;AC=1;AF=0.50;AN=2;BaseQRankSum=1.76;DB;DP=188;DS;Dels=0.0;FS=4.587;HRun=2;HaplotypeScore=2.6075;MQ=34.96;MQ0=36;MQRankSum=-9.265;QD=14.26;ReadPosRankSum=-0.337;SNPEFF_AMINO_ACID_CHANGE=L291F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_151970790_151970952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:42,145:188:99:2711,0,1102
7    151970977    .    C    A    72.40    MQFilter40;QDFilter2    AB=0.898;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.873;DP=128;DS;Dels=0.0;FS=2.979;HRun=0;HaplotypeScore=4.5771;MQ=37.44;MQ0=22;MQRankSum=4.198;QD=0.57;ReadPosRankSum=-1.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:115,13:128:99:102,0,2609
7    151971043    rs2360885    T    C    1704.07    HaplotypeScoreFilter13    AB=0.129;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.3639;MQ=43.33;MQ0=2;MQRankSum=-3.729;QD=27.48;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:8,54:62:99:1734,0,143
7    151971052    rs113668795    TA    T    1123.64    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.61;DB;DP=45;FS=0.0;HRun=4;HaplotypeScore=387.3167;IndelType=D;MQ=43.31;MQ0=2;MQRankSum=-2.41;QD=22.93;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:11,38:45:86.83:1163,0,87
7    151971075    rs75423540    T    C    226.85    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=3.521;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8239;MQ=40.49;MQ0=1;MQRankSum=-0.521;QD=9.07;ReadPosRankSum=1.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:17,8:25:99:257,0,444
7    151971092    rs2951026    G    A    367.04    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9243;MQ=41.54;MQ0=1;MQRankSum=-0.685;QD=19.32;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:7,12:19:81.97:397,0,82
7    152000756    rs62495467    C    T    252.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=57.05;MQ0=0;QD=28.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:286,21,0
7    152027473    rs7806141    G    C    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
7    152027975    rs7789818    T    C    110.37    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=12.26;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,172
7    152055852    rs11982419    G    A    330.09    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.487;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.88;MQ0=0;MQRankSum=0.487;QD=10.65;ReadPosRankSum=1.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262189    GT:AD:DP:GQ:PL    0/1:19,12:31:99:360,0,633
7    152142958    .    C    T    577.01    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.25;DP=36;Dels=0.0;FS=3.037;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=16.03;ReadPosRankSum=0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FABP5P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437960    GT:AD:DP:GQ:PL    0/1:15,21:36:99:607,0,451
7    152143744    rs6953943    A    G    1365.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=52.26;MQ0=1;QD=29.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FABP5P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437960    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1399,114,0
7    152144488    rs11769496    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CCT8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000021776    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    152373233    rs3218385    A    C    52.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=3.47;ReadPosRankSum=-1.061;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_152373126_152373250;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XRCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359321    GT:AD:DP:GQ:PL    0/1:10,5:15:82.02:82,0,309
7    152373252    rs3218384    C    G    206.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.531;QD=17.2;ReadPosRankSum=-0.382;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XRCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359321    GT:AD:DP:GQ:PL    0/1:3,9:12:78.56:236,0,79
7    152511598    rs112910296    C    T    1129.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=28.48;MQ0=1;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256001    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1163,105,0
7    152513769    rs116164729    G    A    2005    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.89;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488782    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2038,163,0
7    152513993    .    G    A    58.29    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.96;MQ0=24;MQRankSum=0.727;QD=2.08;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488782    GT:AD:DP:GQ:PL    0/1:12,16:28:21.40:88,0,21
7    152514022    rs117056070    T    C    67.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488782    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
7    152517724    rs4071561    T    C    188.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.52;MQ0=1;QD=26.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488782    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:222,18,0
7    152520731    rs3864524    T    C    262.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=29.05;MQ0=0;QD=23.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256001    GT:AD:DP:GQ:PL    1/1:0,11:11:27.06:295,27,0
7    152549107    rs6944646    C    T    461.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256001    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:494,36,0
7    152550499    rs4726215    T    C    367.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256001    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:400,30,0
7    152841311    rs10276875    C    T    595.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=56.07;MQ0=0;QD=35.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC079809.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415468    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:628,48,0
7    152841317    rs10233431    T    A    218.92    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.07;MQ0=0;MQRankSum=-0.529;QD=12.88;ReadPosRankSum=-0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC079809.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415468    GT:AD:DP:GQ:PL    0/1:9,8:17:99:249,0,311
7    152841339    rs10233437    T    C    450.84    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=24;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=57.25;MQ0=0;MQRankSum=-0.298;QD=18.79;ReadPosRankSum=-0.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC079809.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415468    GT:AD:DP:GQ:PL    0/1:9,15:24:99:481,0,299
7    152841505    rs10277328    G    A    1012.69    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=1.938;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.61;MQ0=0;MQRankSum=-1.373;QD=15.11;ReadPosRankSum=-2.377;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC079809.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415468    GT:AD:DP:GQ:PL    0/1:34,33:67:99:1043,0,1047
7    152843293    rs4236443    C    T    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC079809.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415468    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    152843611    rs11377095    C    CT    1440.41    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.043;DB;DP=69;FS=0.964;HRun=1;HaplotypeScore=145.6019;IndelType=I;MQ=59.47;MQ0=0;MQRankSum=1.082;QD=20.88;ReadPosRankSum=-0.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC079809.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415468    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1479,0,926
7    154002658    rs143438546    C    CGT    348.21    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=43.8261;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=0.849;QD=23.21;ReadPosRankSum=-2.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:7,8:15:99:387,0,109
7    154263814    rs55633503    C    T    632.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:666,48,0
7    154379517    rs35392762    C    T    744.11    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.454;DB;DP=49;Dels=0.0;FS=6.112;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=1.742;QD=15.19;ReadPosRankSum=-0.67;SNPEFF_AMINO_ACID_CHANGE=S262L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154379360_154380341;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406326    GT:AD:DP:GQ:PL    0/1:25,24:49:99:774,0,803
7    154379739    rs75213895    C    T    1271.02    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.694;DB;DP=109;Dels=0.0;FS=5.329;HRun=0;HaplotypeScore=0.8321;MQ=58.76;MQ0=0;MQRankSum=3.063;QD=11.66;ReadPosRankSum=1.102;SNPEFF_AMINO_ACID_CHANGE=P336L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154379360_154380341;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406326    GT:AD:DP:GQ:PL    0/1:60,49:109:99:1301,0,1577
7    154401017    rs1387191    A    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
7    154401200    rs1387190    G    A    687.36    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;MQRankSum=0.445;QD=14.94;ReadPosRankSum=-1.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:21,25:46:99:717,0,581
7    154401306    rs4270914    C    T    484.74    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.331;DB;DP=37;Dels=0.0;FS=1.909;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=13.1;ReadPosRankSum=1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:20,17:37:99:515,0,617
7    154401362    rs2171612    T    C    319.38    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=19.96;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:6,10:16:99:349,0,180
7    154429560    rs11243339    C    T    1984.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=Y155;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154429531_154429583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404039    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2018,144,0
7    154429657    rs6972501    T    C    775.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:808,63,0
7    154429821    rs11971701    G    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    154461112    rs3807218    A    G    1343.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.85;SNPEFF_AMINO_ACID_CHANGE=K177;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154461070_154461151;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404039    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1376,105,0
7    154461291    rs4960721    G    A    72.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.84;MQ0=0;QD=24.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
7    154596517    rs2280659    G    A    91.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=9.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471100    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,199
7    154598908    rs2293357    A    G    323.39    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.277;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=14.06;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:11,12:23:99:353,0,390
7    154645406    rs6962284    A    G    466.27    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.258;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.46;MQ0=0;MQRankSum=0.679;QD=10.84;ReadPosRankSum=-1.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:21,22:43:99:496,0,737
7    154645576    rs3778732    C    T    1045.67    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.573;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.768;QD=17.43;ReadPosRankSum=0.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1076,0,789
7    154659542    rs10243586    G    A    79.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.83;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:2,3:5:51.81:109,0,52
7    154659566    rs56243497    T    G    78.82    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=57.66;MQ0=0;MQRankSum=-0.546;QD=7.88;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:3,7:10:93.23:109,0,93
7    154659567    rs61154959    T    G    78.82    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=57.66;MQ0=0;MQRankSum=-0.895;QD=7.88;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:3,7:10:95.38:109,0,95
7    154667628    rs2293353    A    G    268.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=28;Dels=0.0;FS=3.674;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=9.61;ReadPosRankSum=0.437;SNPEFF_AMINO_ACID_CHANGE=P525;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154667616_154667810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427557    GT:AD:DP:GQ:PL    0/1:14,14:28:99:299,0,397
7    154667643    rs2230064    G    A    318.24    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=10.27;ReadPosRankSum=1.855;SNPEFF_AMINO_ACID_CHANGE=V530;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154667616_154667810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427557    GT:AD:DP:GQ:PL    0/1:15,16:31:99:348,0,426
7    154672551    rs4960632    G    C    769.78    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.459;DB;DP=50;Dels=0.0;FS=2.911;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=15.4;ReadPosRankSum=-0.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479637    GT:AD:DP:GQ:PL    0/1:22,28:50:99:800,0,728
7    154672662    rs3817521    C    T    955.87    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.194;DB;DP=56;Dels=0.0;FS=1.075;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.498;QD=17.07;ReadPosRankSum=-0.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479637    GT:AD:DP:GQ:PL    0/1:24,32:56:99:986,0,664
7    154672679    rs3817520    A    T    643.11    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.932;DB;DP=49;Dels=0.0;FS=4.432;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=13.12;ReadPosRankSum=-1.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479637    GT:AD:DP:GQ:PL    0/1:23,26:49:99:673,0,622
7    154672717    rs3817519    G    A    486.27    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.327;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=16.21;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479637    GT:AD:DP:GQ:PL    0/1:14,15:30:99:516,0,457
7    154672839    rs3817517    C    T    62.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.44;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479637    GT:AD:DP:GQ:PL    0/1:3,3:6:92.64:93,0,105
7    154679447    rs940378    G    A    6804.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=213;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0641;MQ=59.7;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    1/1:0,213:213:99:6804,515,0
7    154679610    rs2316537    G    C    150.19    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.482;QD=8.83;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:10,7:17:99:180,0,320
7    154679611    rs2316538    A    C    140.42    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.741;QD=8.26;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:10,7:17:99:170,0,324
7    154681050    rs1129300    C    T    742.86    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.59;DB;DP=60;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=0.8321;MQ=58.84;MQ0=0;MQRankSum=-0.464;QD=12.38;ReadPosRankSum=0.616;SNPEFF_AMINO_ACID_CHANGE=A684;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154680982_154681054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427557    GT:AD:DP:GQ:PL    0/1:33,27:60:99:773,0,861
7    154681216    rs1129301    G    A    747.23    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.12;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.48;MQ0=0;MQRankSum=0.254;QD=17.38;ReadPosRankSum=-1.884;SNPEFF_AMINO_ACID_CHANGE=R702;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154681167_154681240;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427557    GT:AD:DP:GQ:PL    0/1:16,27:43:99:777,0,507
7    154681383    rs2280656    T    C    65.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=13.1;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332007    GT:AD:DP:GQ:PL    0/1:2,3:5:70.24:95,0,70
7    154684153    rs3734960    T    C    1355.55    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.932;DB;DP=109;Dels=0.0;FS=0.737;HRun=1;HaplotypeScore=2.3121;MQ=59.62;MQ0=0;MQRankSum=-0.348;QD=12.44;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=L747P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_154684044_154684248;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427557    GT:AD:DP:GQ:PL    0/1:59,50:109:99:1386,0,1912
7    154720259    rs11543936    T    C    537.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_7_154720227_154720477;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC093726.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397551    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:571,45,0
7    154736077    rs930437    G    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323199    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    154739907    rs2316540    A    G    482.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC093726.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397551    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:515,39,0
7    154748908    rs3817480    G    A    715.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485730    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:749,60,0
7    154751774    rs2272174    G    A    381.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485730    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:414,30,0
7    154753854    rs2293261    A    G    499.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323199    GT:AD:DP:GQ:PL    1/1:0,16:16:48.11:533,48,0
7    154755628    rs748811    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475066    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    154755699    rs748810    T    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475066    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
7    154759671    rs893942    T    C    784.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494182    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:817,63,0
7    154760889    rs3800580    A    C    207.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323199    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:240,18,0
7    154774701    rs3835185    TA    T    173.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=4;HaplotypeScore=16.2003;IndelType=D;MQ=61.78;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323199    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:216,18,0
7    154785362    rs306281    A    G    768.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323199    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:801,66,0
7    154790682    rs12539951    C    G    188.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=31.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323199    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:221,18,0
7    154862508    rs3734967    A    G    505.94    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.502;DB;DP=46;Dels=0.0;FS=2.996;HRun=1;HaplotypeScore=1.8665;MQ=60.0;MQ0=0;MQRankSum=0.569;QD=11.0;ReadPosRankSum=0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093726.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395731    GT:AD:DP:GQ:PL    0/1:27,19:46:99:536,0,839
7    154862591    rs1800883    G    C    1043.65    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=90;Dels=0.0;FS=4.251;HRun=1;HaplotypeScore=2.8161;MQ=60.0;MQ0=0;MQRankSum=0.863;QD=11.6;ReadPosRankSum=1.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC093726.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395731    GT:AD:DP:GQ:PL    0/1:52,38:90:99:1074,0,1544
7    154863467    rs2241859    G    T    54.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287907    GT:AD:DP:GQ:PL    0/1:5,3:8:84.28:84,0,186
7    154875780    rs1730208    G    A    147.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=13.42;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287907    GT:AD:DP:GQ:PL    0/1:5,6:11:99:178,0,148
7    154876342    rs980442    T    G    132.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486819    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
7    154988930    rs117040783    C    G    644.12    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.187;DB;DP=37;Dels=0.0;FS=3.12;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=17.41;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC099552.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404289    GT:AD:DP:GQ:PL    0/1:15,22:37:99:674,0,380
7    154989112    rs117738695    C    G    465.47    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.142;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.085;QD=18.62;ReadPosRankSum=0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC099552.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404289    GT:AD:DP:GQ:PL    0/1:9,16:25:99:495,0,269
7    154990176    rs4960698    C    A    265.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC099552.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404289    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:298,24,0
7    155093042    rs9768378    C    T    124.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425172    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
7    155093087    rs9768380    C    T    414.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425172    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:448,33,0
7    155093826    rs77130377    T    C    175.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425172    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:209,15,0
7    155095452    rs79984271    C    T    468.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468307    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:501,39,0
7    155150443    rs3923205    G    A    1549.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=S144;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155149680_155151475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLACE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378120    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1582,123,0
7    155150460    rs3923204    G    T    1344.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.92;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=L139I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155149680_155151475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLACE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378120    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1377,108,0
7    155150472    rs3922604    G    A    1348.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=R135W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155149680_155151475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLACE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378120    GT:AD:DP:GQ:PL    1/1:0,41:42:99:1381,108,0
7    155150560    rs6605563    A    G    465.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=29.09;SNPEFF_AMINO_ACID_CHANGE=P105;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155149680_155151475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLACE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378120    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:498,39,0
7    155150602    rs6605562    T    C    400.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_AMINO_ACID_CHANGE=G91;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155149680_155151475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLACE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378120    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:433,33,0
7    155254897    rs4717034    C    T    132.80    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=14.76;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297375    GT:AD:DP:GQ:PL    0/1:4,5:9:99:163,0,137
7    155255010    rs117472001    T    C    972.97    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.39;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9556;MQ=59.47;MQ0=0;MQRankSum=0.015;QD=12.32;ReadPosRankSum=-0.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297375    GT:AD:DP:GQ:PL    0/1:44,35:79:99:1003,0,1452
7    155255332    rs2361689    T    C    370.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=26.46;SNPEFF_AMINO_ACID_CHANGE=L318;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155255066_155257526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297375    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:403,33,0
7    155295854    rs7804744    G    A    428.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNPY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321736    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:462,33,0
7    155301693    .    CCTT    C    1758.35    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=6.337;DP=79;FS=1.874;HRun=0;HaplotypeScore=322.3017;IndelType=D;MQ=56.78;MQ0=0;MQRankSum=-0.862;QD=22.26;ReadPosRankSum=-1.779;SNPEFF_AMINO_ACID_CHANGE=K13-;SNPEFF_CODON_CHANGE=aag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_7_155301589_155301792;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNPY1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321736    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1797,0,2330
7    155465422    rs7811556    C    G    115.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287912    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
7    155503920    rs7800753    A    T    1120.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8924;MQ=55.1;MQ0=0;QD=25.47;SNPEFF_AMINO_ACID_CHANGE=P225;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155503867_155504149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440108    GT:AD:DP:GQ:PL    1/1:1,38:44:99:1154,99,0
7    155598879    rs1233554    A    C    208.34    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=17.36;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472308    GT:AD:DP:GQ:PL    0/1:5,7:12:99:238,0,160
7    155599300    rs1233555    C    T    190.51    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.245;DB;DP=30;Dels=0.0;FS=6.329;HRun=0;HaplotypeScore=7.056;MQ=58.61;MQ0=0;MQRankSum=-0.854;QD=6.35;ReadPosRankSum=0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297261    GT:AD:DP:GQ:PL    0/1:16,13:30:99:221,0,527
7    155664557    rs63696360    A    C    2470.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC104133.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408186    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2503,193,0
7    155664686    rs6971211    C    T    379.82    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.737;DB;DP=59;Dels=0.0;FS=8.805;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.151;QD=6.44;ReadPosRankSum=1.238;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC104133.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408186    GT:AD:DP:GQ:PL    0/1:45,14:59:99:410,0,1325
7    155664711    rs6978908    A    G    418.91    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.019;DB;DP=61;Dels=0.0;FS=4.046;HRun=1;HaplotypeScore=1.4972;MQ=59.62;MQ0=0;MQRankSum=-0.426;QD=6.87;ReadPosRankSum=-0.989;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC104133.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408186    GT:AD:DP:GQ:PL    0/1:44,17:61:99:449,0,1354
7    155755826    rs2007015    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_AMINO_ACID_CHANGE=S101;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155755326_155755969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021218.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377722    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
7    155757502    rs1551630    T    C    152.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_AMINO_ACID_CHANGE=V268A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_155757146_155759037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021218.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377722    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:185,15,0
7    156469096    rs2302149    C    T    889.93    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=2.373;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.446;QD=16.48;ReadPosRankSum=0.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316198    GT:AD:DP:GQ:PL    0/1:21,33:54:99:920,0,640
7    156473779    rs71838136    T    TA    261.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=24.0501;IndelType=I;MQ=58.05;MQ0=0;QD=21.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316198    GT:AD:DP:GQ:PL    1/1:1,11:12:30.06:304,30,0
7    156518007    rs2072468    T    C    261.92    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.975;QD=10.07;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316198    GT:AD:DP:GQ:PL    0/1:16,10:26:99:292,0,565
7    156629383    rs112216864    G    C    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316198    GT:AD:DP:GQ:PL    0/1:2,3:5:64.96:110,0,65
7    156755350    rs12672076    T    C    739.77    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.546;DB;DP=69;Dels=0.0;FS=4.735;HRun=0;HaplotypeScore=1.7273;MQ=59.33;MQ0=0;MQRankSum=-0.271;QD=10.72;ReadPosRankSum=-0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460332    GT:AD:DP:GQ:PL    0/1:37,32:69:99:770,0,1047
7    156761751    rs9969350    C    T    357.56    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.504;QD=12.33;ReadPosRankSum=0.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469271    GT:AD:DP:GQ:PL    0/1:15,14:29:99:388,0,501
7    156761818    rs2302445    G    A    693.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.424;QD=13.33;ReadPosRankSum=0.292;SNPEFF_AMINO_ACID_CHANGE=R779H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_156761781_156761890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275820    GT:AD:DP:GQ:PL    0/1:26,26:52:99:723,0,651
7    156761913    rs2302444    C    T    492.44    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.346;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.022;QD=16.98;ReadPosRankSum=-1.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472491    GT:AD:DP:GQ:PL    0/1:13,16:29:99:522,0,367
7    156762224    rs2302443    G    C    821.78    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=64;Dels=0.0;FS=9.091;HRun=0;HaplotypeScore=0.6651;MQ=59.71;MQ0=0;MQRankSum=0.832;QD=12.84;ReadPosRankSum=-0.859;SNPEFF_AMINO_ACID_CHANGE=V804L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_156762223_156765876;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275820    GT:AD:DP:GQ:PL    0/1:36,28:64:99:852,0,1214
7    156762248    rs12919    G    A    787.67    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.322;DB;DP=82;Dels=0.0;FS=13.415;HRun=0;HaplotypeScore=1.6648;MQ=59.49;MQ0=0;MQRankSum=-1.231;QD=9.61;ReadPosRankSum=-0.014;SNPEFF_AMINO_ACID_CHANGE=V812M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_156762223_156765876;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000275820    GT:AD:DP:GQ:PL    0/1:50,32:82:99:818,0,1692
7    156762446    rs3087905    G    T    777.40    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.999;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.014;QD=18.96;ReadPosRankSum=1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485661    GT:AD:DP:GQ:PL    0/1:14,27:41:99:807,0,472
7    156971581    rs870745    T    C    236.87    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.819;DB;DP=31;Dels=0.0;FS=2.139;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.318;QD=7.64;ReadPosRankSum=0.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348165    GT:AD:DP:GQ:PL    0/1:19,12:31:99:267,0,688
7    157047091    .    T    TATTA    404.40    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=0;HaplotypeScore=20.3686;IndelType=I;MQ=60.62;MQ0=0;QD=57.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348165    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:446,18,0
7    157056786    rs1184670    G    A    156.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348165    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:189,15,0
7    157151234    rs3802100    C    T    165.17    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.01;MQ0=0;MQRankSum=0.972;QD=8.69;ReadPosRankSum=-1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262177    GT:AD:DP:GQ:PL    0/1:12,7:19:99:195,0,384
7    157159423    rs3779591    G    A    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437030    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
7    157208617    rs1009135    C    T    781.53    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9999;MQ=59.05;MQ0=0;MQRankSum=0.111;QD=15.95;ReadPosRankSum=-1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262177    GT:AD:DP:GQ:PL    0/1:21,28:49:99:812,0,648
7    157341556    rs74969978    GC    G    165.42    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=17;FS=0.0;HRun=3;HaplotypeScore=46.0971;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=1.22;QD=9.73;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:10,7:17:99:204,0,381
7    157361734    rs221294    T    C    222.87    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.109;QD=10.61;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:13,8:21:99:253,0,465
7    157370688    rs122004    C    G    286.56    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=23;Dels=0.0;FS=1.871;HRun=1;HaplotypeScore=1.4942;MQ=58.99;MQ0=0;MQRankSum=0.106;QD=12.46;ReadPosRankSum=-0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:11,12:23:99:317,0,307
7    157388186    rs151336512    T    A    30.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:3,2:5:60.62:61,0,103
7    157388189    rs140050074    T    A    30.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=6.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:3,2:5:60.62:61,0,110
7    157406846    rs62476782    G    A    132.50    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.05;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005481.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409610    GT:AD:DP:GQ:PL    0/1:6,5:11:99:162,0,212
7    157413909    .    G    GGGGCTGGTACACACAGGTCAGCACGGCCAGGTTCCCACTCCTGTCACCCTGGCCTCCTGCCCCTA    10275.60    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.489;DP=69;FS=13.56;HRun=0;HaplotypeScore=2805.4065;IndelType=I;MQ=42.61;MQ0=0;MQRankSum=3.198;QD=146.79;ReadPosRankSum=-0.494;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005481.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409610    GT:AD:DP:GQ:PL    0/1:30,1:69:99:10276,0,1248
7    157413910    .    G    C    221.46    HaplotypeScoreFilter13    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.105;DP=68;Dels=0.0;FS=10.927;HRun=0;HaplotypeScore=22.5276;MQ=42.98;MQ0=0;MQRankSum=0.45;QD=3.26;ReadPosRankSum=-4.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005481.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409610    GT:AD:DP:GQ:PL    0/1:54,10:68:99:251,0,890
7    157413945    rs75531766    T    A    149.99    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.048;DB;DP=50;Dels=0.0;FS=3.866;HRun=0;HaplotypeScore=0.0;MQ=42.73;MQ0=0;MQRankSum=-3.77;QD=3.0;ReadPosRankSum=0.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005481.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409610    GT:AD:DP:GQ:PL    0/1:36,14:50:99:180,0,750
7    157413953    rs74475250    G    T    61.87    QDFilter2    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.806;DB;DP=43;Dels=0.0;FS=10.915;HRun=0;HaplotypeScore=0.0;MQ=44.62;MQ0=0;MQRankSum=-3.478;QD=1.44;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005481.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409610    GT:AD:DP:GQ:PL    0/1:34,9:43:91.86:92,0,827
7    157413959    .    T    A    65.58    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DP=42;Dels=0.0;FS=10.708;HRun=0;HaplotypeScore=0.0;MQ=45.48;MQ0=0;MQRankSum=-3.539;QD=1.56;ReadPosRankSum=0.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005481.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409610    GT:AD:DP:GQ:PL    0/1:34,8:42:95.57:96,0,869
7    157414064    rs10271485    G    A    1084.38    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.632;DB;DP=102;Dels=0.0;FS=0.787;HRun=0;HaplotypeScore=3.9604;MQ=54.77;MQ0=0;MQRankSum=0.558;QD=10.63;ReadPosRankSum=2.12;SNPEFF_AMINO_ACID_CHANGE=A740;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_157414054_157414201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409483    GT:AD:DP:GQ:PL    0/1:60,42:102:99:1114,0,1547
7    157439550    rs1638023    A    G    1057.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=56.64;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,32:32:90.24:1091,90,0
7    157439636    rs6950817    A    G    2066.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7128;MQ=51.96;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2099,174,0
7    157440693    .    G    A    77.36    MQFilter40    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.986;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.05;MQ0=13;MQRankSum=-0.416;QD=2.34;ReadPosRankSum=1.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:16,17:33:99:107,0,149
7    157440943    .    C    T    131.67    MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DP=34;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.6651;MQ=17.18;MQ0=17;MQRankSum=1.415;QD=3.87;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:23,11:34:99:162,0,123
7    157440951    .    C    T    259.53    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=18.32;MQ0=13;MQRankSum=1.47;QD=9.61;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:4,23:27:27.04:293,27,0
7    157441030    .    A    G    53.70    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.8;MQ0=4;MQRankSum=1.495;QD=4.88;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:6,5:11:10.67:84,0,11
7    157441054    rs9770472    A    G    74.66    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.98;MQ0=4;MQRankSum=1.58;QD=5.33;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:4,10:14:6.67:104,0,7
7    157441066    .    T    C    122.66    MQFilter40    AC=2;AF=1.00;AN=2;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.4;MQ0=3;QD=8.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:2,12:14:15.01:155,15,0
7    157441087    .    C    T    61.90    MQFilter40    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.7872;MQ=21.42;MQ0=3;MQRankSum=1.991;QD=2.81;ReadPosRankSum=2.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:17,5:22:91.90:92,0,215
7    157441096    rs76661081    T    C    118.87    MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.149;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.7075;MQ=21.32;MQ0=4;MQRankSum=2.236;QD=5.17;ReadPosRankSum=-1.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:16,7:23:99:149,0,177
7    157441121    .    C    T    166.23    MQFilter40    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.356;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6385;MQ=20.35;MQ0=7;MQRankSum=2.272;QD=4.75;ReadPosRankSum=1.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:23,12:35:99:196,0,158
7    157441181    .    C    T    49.61    MQFilter40;QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.156;DP=39;Dels=0.0;FS=2.715;HRun=1;HaplotypeScore=6.6988;MQ=25.53;MQ0=6;MQRankSum=0.623;QD=1.27;ReadPosRankSum=-1.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:33,6:39:79.60:80,0,495
7    157441189    .    C    T    305.52    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DP=39;Dels=0.0;FS=16.833;HRun=1;HaplotypeScore=11.6069;MQ=25.89;MQ0=5;MQRankSum=1.279;QD=7.83;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:21,18:39:99:336,0,216
7    157441198    .    C    T    35.11    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.875;DP=37;Dels=0.0;FS=5.815;HRun=1;HaplotypeScore=20.4475;MQ=26.03;MQ0=5;MQRankSum=-1.325;QD=0.95;ReadPosRankSum=-1.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:29,8:37:65.11:65,0,522
7    157441203    .    G    A    106.50    HaplotypeScoreFilter13;MQFilter40    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=1.428;DP=33;Dels=0.0;FS=4.775;HRun=0;HaplotypeScore=14.679;MQ=26.32;MQ0=4;MQRankSum=2.212;QD=3.23;ReadPosRankSum=0.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:26,7:33:99:136,0,400
7    157441271    .    A    G    56.50    MQFilter40    AC=2;AF=1.00;AN=2;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.24;MQ0=0;QD=9.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,6:6:9:89,9,0
7    157441317    rs148537990    C    T    738.15    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.177;DB;DP=41;Dels=0.0;FS=1.309;HRun=1;HaplotypeScore=0.5784;MQ=50.8;MQ0=0;MQRankSum=0.014;QD=18.0;ReadPosRankSum=-1.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:15,26:41:99:768,0,479
7    157441360    rs144331111    A    G    1325.83    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.103;DB;DP=85;Dels=0.0;FS=0.878;HRun=1;HaplotypeScore=0.0;MQ=49.79;MQ0=0;MQRankSum=-0.004;QD=15.6;ReadPosRankSum=2.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:35,50:85:99:1356,0,860
7    157441371    rs146600118    C    A    895.42    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=2.099;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.67;MQ0=0;MQRankSum=1.706;QD=9.43;ReadPosRankSum=-2.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:56,39:95:99:925,0,1652
7    157441485    .    C    T    3014.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.084;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8134;MQ=55.01;MQ0=0;MQRankSum=4.031;QD=31.73;ReadPosRankSum=-1.538;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:6,89:95:99:3047,216,0
7    157441526    rs1965624    G    A    2780.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.362;DB;DP=89;Dels=0.0;FS=3.869;HRun=0;HaplotypeScore=0.0;MQ=56.01;MQ0=0;MQRankSum=2.82;QD=31.24;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:3,85:89:99:2813,213,0
7    157441700    rs63749668    G    A    876.02    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=83;Dels=0.0;FS=0.984;HRun=0;HaplotypeScore=2.1992;MQ=46.74;MQ0=0;MQRankSum=0.08;QD=10.55;ReadPosRankSum=-1.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:44,39:83:99:906,0,1125
7    157441768    rs7794805    A    G    1509.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=25.23;MQ0=9;QD=17.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:1,83:84:99:1542,144,0
7    157441904    rs7807459    A    G    90.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.0;MQ0=15;QD=2.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,31:31:12.01:123,12,0
7    157441997    rs7811455    T    C    161.82    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DB;DP=30;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=12.61;MQ0=13;MQRankSum=-0.714;QD=5.39;ReadPosRankSum=1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:1,29:30:2.31:191,2,0
7    157442040    rs7807624    A    G    290.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.26;MQ0=15;QD=8.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,34:34:33.04:323,33,0
7    157442151    .    T    C    773.17    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=2.846;DP=66;Dels=0.0;FS=35.558;HRun=1;HaplotypeScore=1.748;MQ=41.19;MQ0=5;MQRankSum=-1.663;QD=11.54;ReadPosRankSum=0.924;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:31,35:66:99:803,0,842
7    157442276    .    T    A    526.78    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DP=51;Dels=0.0;FS=2.944;HRun=0;HaplotypeScore=1.98;MQ=33.1;MQ0=7;MQRankSum=-1.146;QD=10.33;ReadPosRankSum=0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:25,25:51:99:557,0,504
7    157442378    .    T    A    1061.92    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DP=66;Dels=0.0;FS=2.235;HRun=0;HaplotypeScore=6.0766;MQ=51.4;MQ0=4;MQRankSum=0.34;QD=16.09;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:28,37:66:99:1092,0,634
7    157442720    rs72505541    C    T    407.96    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.222;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.185;QD=13.6;ReadPosRankSum=1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:16,14:30:99:438,0,423
7    157445995    rs2530404    A    G    77.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
7    157446021    rs2530405    C    G    125.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
7    157446134    rs2906929    C    T    94.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
7    157451447    rs2906934    G    A    676.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:710,57,0
7    157462425    rs755703    T    C    35.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
7    157462464    rs1079359    A    G    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
7    157508785    rs1638763    G    A    79.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=19.94;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:1,3:4:24.09:110,0,24
7    157508867    rs72505543    G    A    275.36    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=37;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.92;MQ0=0;MQRankSum=-2.879;QD=7.44;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:23,14:37:99:305,0,706
7    157508903    rs7799271    C    G    687.94    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=66;Dels=0.0;FS=1.687;HRun=0;HaplotypeScore=4.4479;MQ=51.07;MQ0=0;MQRankSum=-5.306;QD=10.42;ReadPosRankSum=-1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:34,31:66:99:718,0,1050
7    157508951    rs78566714    G    A    824.75    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=3.932;DB;DP=98;Dels=0.0;FS=6.371;HRun=0;HaplotypeScore=0.734;MQ=52.4;MQ0=1;MQRankSum=-3.924;QD=8.42;ReadPosRankSum=3.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:61,37:98:99:855,0,1566
7    157509131    rs111612464    A    G    262.97    PASS    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=120;Dels=0.0;FS=45.984;HRun=2;HaplotypeScore=0.0;MQ=49.48;MQ0=4;MQRankSum=-5.759;QD=2.19;ReadPosRankSum=2.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:95,23:120:99:293,0,2716
7    157509161    rs13308345    A    G    335.94    PASS    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=2.334;DB;DP=132;Dels=0.0;FS=52.77;HRun=2;HaplotypeScore=0.8321;MQ=43.07;MQ0=8;MQRankSum=-3.193;QD=2.55;ReadPosRankSum=2.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:109,23:132:99:366,0,2398
7    157509730    rs7800511    C    T    815.24    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.161;DB;DP=159;Dels=0.0;FS=12.719;HRun=0;HaplotypeScore=2.5284;MQ=43.47;MQ0=7;MQRankSum=-0.458;QD=5.13;ReadPosRankSum=1.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:108,50:159:99:845,0,2060
7    157509761    rs7783172    A    G    1845.74    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.76;DB;DP=168;Dels=0.0;FS=8.796;HRun=2;HaplotypeScore=6.7844;MQ=48.32;MQ0=4;MQRankSum=-3.131;QD=10.99;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:77,91:168:99:1876,0,2169
7    157650836    rs11762925    G    A    33.47    MQFilter40;QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.23;MQ0=10;MQRankSum=-0.937;QD=1.76;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:14,4:19:63.46:63,0,124
7    157650906    rs146308988    T    C    173.02    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=29.1;MQ0=1;MQRankSum=-0.896;QD=14.42;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:5,7:12:72.91:203,0,73
7    157650913    rs11770647    C    T    290.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.39;MQ0=1;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:1,10:11:30.07:323,30,0
7    157652238    rs148782176    C    T    117.39    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.511;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=21.41;MQ0=1;MQRankSum=1.755;QD=4.89;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:14,10:24:46.05:147,0,46
7    157680450    rs11769297    T    C    201.06    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=44.98;MQ0=0;MQRankSum=1.466;QD=14.36;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:5,9:14:99:231,0,104
7    157689497    rs12698111    G    A    107.12    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.42;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:137,0,27
7    157691523    rs56112490    T    C    264.22    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.179;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=1.152;QD=8.81;ReadPosRankSum=-0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:17,13:30:99:294,0,520
7    157873975    rs3800863    T    C    229.62    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.139;DB;DP=26;Dels=0.0;FS=1.85;HRun=0;HaplotypeScore=0.9983;MQ=58.55;MQ0=0;MQRankSum=0.971;QD=8.83;ReadPosRankSum=0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:15,11:26:99:260,0,449
7    157926349    rs17847428    T    G    615.09    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.305;DB;DP=44;Dels=0.0;FS=1.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=13.98;ReadPosRankSum=-0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:21,23:44:99:645,0,658
7    157929223    rs3800858    G    A    63.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.1;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:3,4:7:93.70:94,0,107
7    157930974    rs3752366    C    T    214.17    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.538;DB;DP=26;Dels=0.0;FS=2.072;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.33;QD=8.24;ReadPosRankSum=-1.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:17,9:26:99:244,0,494
7    157930979    rs3752367    C    G    270.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.023;DB;DP=33;Dels=0.0;FS=1.67;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.198;QD=8.2;ReadPosRankSum=-1.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:22,11:33:99:301,0,654
7    157931119    rs1130500    A    G    527.15    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.02;DB;DP=63;Dels=0.0;FS=3.687;HRun=1;HaplotypeScore=0.9958;MQ=59.34;MQ0=0;MQRankSum=0.262;QD=8.37;ReadPosRankSum=0.525;SNPEFF_AMINO_ACID_CHANGE=A295;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_157930986_157931207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409483    GT:AD:DP:GQ:PL    0/1:40,23:63:99:557,0,1262
7    157931144    rs1130499    C    T    609.67    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.782;DB;DP=61;Dels=0.0;FS=1.009;HRun=1;HaplotypeScore=0.7887;MQ=58.86;MQ0=0;MQRankSum=1.078;QD=9.99;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=S287N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_157930986_157931207;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409483    GT:AD:DP:GQ:PL    0/1:36,25:61:99:640,0,1077
7    157931263    rs3752371    G    C    177.89    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.742;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-2.353;QD=8.47;ReadPosRankSum=-0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:13,8:21:99:208,0,439
7    157959879    rs1130497    C    T    552.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.08;SNPEFF_AMINO_ACID_CHANGE=P180;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_157959623_157959983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409483    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:585,45,0
7    157959895    rs1130496    C    T    537.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.28;SNPEFF_AMINO_ACID_CHANGE=R175H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_157959623_157959983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409483    GT:AD:DP:GQ:PL    1/1:0,18:19:45.11:570,45,0
7    157959911    rs1130495    A    G    690.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=S170P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_157959623_157959983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409483    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:723,54,0
7    158121055    rs56205111    T    C    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
7    158195180    rs1563065    C    T    388.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:422,33,0
7    158199561    rs13308587    C    G    307.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,9:9:27.04:340,27,0
7    158199827    .    T    C    81.44    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.64;MQ0=0;MQRankSum=-0.717;QD=7.4;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:6,5:11:99:111,0,109
7    158199834    .    T    C    261.07    MQFilter40    AC=2;AF=1.00;AN=2;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.07;MQ0=0;QD=21.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:1,11:12:27.07:294,27,0
7    158199841    .    T    C    187.50    MQFilter40    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=33.42;MQ0=0;QD=18.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:1,9:10:21.04:220,21,0
7    158199848    .    T    C    90.49    MQFilter40    AC=2;AF=1.00;AN=2;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=12.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:1,6:7:12.01:123,12,0
7    158200397    rs28502325    A    G    32.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:64,6,0
7    158325503    rs4909237    C    T    1757.33    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=6.18;DB;DP=112;Dels=0.0;FS=2.138;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.906;QD=15.69;ReadPosRankSum=-1.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    0/1:52,60:112:99:1787,0,1412
7    158334101    rs10623822    T    TTA    5720.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;FS=0.0;HRun=0;HaplotypeScore=294.9661;IndelType=I;MQ=59.97;MQ0=1;QD=51.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389413    GT:AD:DP:GQ:PL    1/1:5,104:111:99:5721,319,0
7    158441509    rs75771994    C    T    1565.97    HaplotypeScoreFilter13;MQFilter40    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=3.247;DB;DP=247;DS;Dels=0.0;FS=0.684;HRun=0;HaplotypeScore=24.3165;MQ=35.79;MQ0=33;MQRankSum=3.488;QD=6.31;ReadPosRankSum=1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    0/1:164,81:247:99:1596,0,1801
7    158441519    .    C    G    1590.42    HaplotypeScoreFilter13;MQFilter40    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.245;DP=230;DS;Dels=0.0;FS=7.923;HRun=1;HaplotypeScore=25.9779;MQ=39.48;MQ0=26;MQRankSum=2.401;QD=6.91;ReadPosRankSum=1.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    0/1:151,79:230:99:1620,0,2225
7    158455089    rs4484634    G    A    715.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9312;MQ=57.87;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:748,57,0
7    158457458    rs3816466    A    G    1060.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,27:27:81.25:1093,81,0
7    158463984    rs2290391    G    C    449.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:482,36,0
7    158468437    rs1530967    G    A    485.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:519,39,0
7    158472905    rs2305469    T    C    460.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:493,36,0
7    158473339    rs2305470    G    T    420.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:453,36,0
7    158476106    rs6970374    C    T    2599.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2632,202,0
7    158476148    rs6969248    G    A    1756.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1789,132,0
7    158476271    rs6956496    T    C    167.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275830    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
7    158483062    rs117840625    G    C    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.15;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479022    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:75,0,28
7    158486309    rs4909262    C    T    131.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356309    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
7    158486361    rs4909263    A    G    71.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NCAPG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356309    GT:AD:DP:GQ:PL    1/1:0,3:3:9:104,9,0
7    158528158    rs3816461    C    G    3112.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3146,232,0
7    158528170    rs7787974    G    A    3571.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.78;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,105:106:99:3572,265,0
7    158534163    rs111235572    T    TG    1347.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=6;HaplotypeScore=84.378;IndelType=I;MQ=60.53;MQ0=0;QD=35.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429474    GT:AD:DP:GQ:PL    1/1:2,36:38:99:1390,111,0
7    158551985    rs1189194    C    T    134.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
7    158552331    rs896859    C    G    817.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,22:23:63.20:851,63,0
7    158555706    rs844521    C    T    322.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
7    158557372    rs34213199    T    C    1009.83    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=5.121;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.211;QD=9.53;ReadPosRankSum=0.728;SNPEFF_AMINO_ACID_CHANGE=Y238C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_158557368_158557544;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429474    GT:AD:DP:GQ:PL    0/1:69,37:106:99:1040,0,1944
7    158560621    rs2602542    A    C    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
7    158566138    rs842447    T    C    491.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:524,45,0
7    158566217    rs842448    C    T    165.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
7    158590512    rs2788501    T    A    247.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
7    158590547    rs72418427    G    GA    307.04    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.503;DB;DP=22;FS=0.0;HRun=13;HaplotypeScore=255.9956;IndelType=I;MQ=50.96;MQ0=0;MQRankSum=0.056;QD=13.96;ReadPosRankSum=-1.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    0/1:7,14:22:5.54:346,0,6
7    158590911    rs2952820    A    G    173.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
7    158591851    rs2709855    C    T    619.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESYT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251527    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:653,51,0
7    158662511    rs5888773    T    TTTTAAAC    1521.18    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.232;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=139.3081;IndelType=I;MQ=45.74;MQ0=0;MQRankSum=-4.308;QD=56.34;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397143    GT:AD:DP:GQ:PL    0/1:17,10:27:99:1560,0,710
7    158662698    rs842696    T    C    110.23    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=-0.101;QD=8.48;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397143    GT:AD:DP:GQ:PL    0/1:7,6:13:99:140,0,216
7    158672476    rs2709859    C    G    3511.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_AMINO_ACID_CHANGE=N225K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_158672375_158672680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3511,259,0
7    158672619    rs2788478    A    G    1413.66    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.208;DB;DP=133;Dels=0.0;FS=1.404;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=10.63;ReadPosRankSum=1.441;SNPEFF_AMINO_ACID_CHANGE=Q273R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_158672375_158672680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:78,55:133:99:1444,0,2433
7    158679717    rs139730326    C    T    1572.55    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=106;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.301;QD=14.84;ReadPosRankSum=-1.022;SNPEFF_AMINO_ACID_CHANGE=A314V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_158679712_158679766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:50,56:106:99:1603,0,1620
7    158683825    rs2657364    T    C    237.22    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.243;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.288;QD=13.18;ReadPosRankSum=1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:10,8:18:99:267,0,302
7    158684152    rs12672574    A    G    157.04    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=19.63;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:2,6:8:62.45:187,0,62
7    158711295    rs2301900    T    C    361.62    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.605;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.843;QD=14.46;ReadPosRankSum=-1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:12,13:25:99:392,0,415
7    158711643    rs3216979    AT    A    198.35    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=28;FS=0.0;HRun=4;HaplotypeScore=70.2526;IndelType=D;MQ=58.73;MQ0=0;MQRankSum=2.017;QD=7.08;ReadPosRankSum=-1.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:19,9:28:99:237,0,697
7    158715219    rs62862160    A    G    2788.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.72;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=K691;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_158715068_158715240;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2822,226,0
7    158715264    rs6459913    A    G    755.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=56;Dels=0.0;FS=7.329;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=13.5;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:28,28:56:99:786,0,839
7    158718793    rs2527188    A    G    213.27    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.793;DB;DP=29;Dels=0.0;FS=5.238;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.074;QD=7.35;ReadPosRankSum=-1.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:16,13:29:99:243,0,579
7    158719084    rs2244789    C    T    2687.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2720,208,0
7    158719253    rs3815214    G    A    370.05    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.432;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=58.61;MQ0=0;MQRankSum=0.898;QD=13.71;ReadPosRankSum=1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:14,13:27:99:400,0,467
7    158723014    rs2730241    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
7    158726798    rs34181207    T    TC    2624.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=0;HaplotypeScore=135.1639;IndelType=I;MQ=60.35;MQ0=0;QD=45.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    1/1:1,57:58:99:2666,169,0
7    158727015    rs35962377    C    CT    1958.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=4;HaplotypeScore=135.162;IndelType=I;MQ=60.58;MQ0=0;QD=38.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    1/1:3,48:51:99:2001,147,0
7    158727276    rs2657331    T    A    275.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=30;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.418;QD=9.2;ReadPosRankSum=0.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:18,12:30:99:306,0,621
7    158727303    rs2657332    G    T    279.41    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.669;DB;DP=21;Dels=0.0;FS=3.222;HRun=2;HaplotypeScore=1.5317;MQ=58.89;MQ0=0;MQRankSum=1.091;QD=13.31;ReadPosRankSum=-2.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407559    GT:AD:DP:GQ:PL    0/1:10,11:21:99:309,0,342
7    158738611    rs2527201    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454771    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    158738634    rs2252502    G    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454771    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
7    158827401    rs1017033    A    G    662.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262178    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:696,54,0
7    158829285    rs2730223    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262178    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
7    158835631    rs2540353    A    G    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262178    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
7    158851234    rs2098349    T    G    2370.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=T115;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_158851172_158851269;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377633    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2404,181,0
7    158851804    rs2730257    C    T    671.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262178    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:704,57,0
7    158896436    rs17837874    G    A    900.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.261;DB;DP=64;Dels=0.0;FS=1.036;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=14.06;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262178    GT:AD:DP:GQ:PL    0/1:32,32:64:99:930,0,819
7    158896517    rs2270313    G    A    874.16    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.767;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.827;QD=14.82;ReadPosRankSum=0.099;SNPEFF_AMINO_ACID_CHANGE=D237;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_158896448_158896545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402066    GT:AD:DP:GQ:PL    0/1:28,31:59:99:904,0,845
7    158902425    rs3793232    T    C    231.48    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.883;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.472;QD=12.18;ReadPosRankSum=-1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262178    GT:AD:DP:GQ:PL    0/1:10,9:19:99:261,0,286
7    158902567    rs3750071    G    A    609.86    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=36;Dels=0.0;FS=7.902;HRun=0;HaplotypeScore=0.9997;MQ=59.36;MQ0=0;MQRankSum=-0.926;QD=16.94;ReadPosRankSum=0.253;SNPEFF_AMINO_ACID_CHANGE=A206;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_7_158902503_158902610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402066    GT:AD:DP:GQ:PL    0/1:15,21:36:99:640,0,470
7    158935333    rs439204    G    C    335.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262178    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
8    163302    rs141069412    CAT    C    2787.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.0;HRun=0;HaplotypeScore=502.6216;IndelType=D;MQ=34.45;MQ0=0;QD=38.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL23AP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521854    GT:AD:DP:GQ:PL    1/1:3,69:72:99:2829,205,0
8    163370    rs7844253    C    G    2766.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=41.48;MQ0=0;MQRankSum=1.19;QD=32.94;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL23AP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521854    GT:AD:DP:GQ:PL    1/1:1,82:83:99:2800,226,0
8    163387    rs3008286    C    T    2932.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=45.19;MQ0=0;MQRankSum=1.313;QD=31.2;ReadPosRankSum=1.694;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL23AP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521854    GT:AD:DP:GQ:PL    1/1:1,93:94:99:2965,204,0
8    163438    rs7844396    C    T    3321.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7853;MQ=49.57;MQ0=0;QD=33.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL23AP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521854    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3322,259,0
8    163550    rs7816944    A    G    1972.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.22;MQ0=6;QD=29.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL23AP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521854    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2005,168,0
8    163784    rs7388505    C    G    299.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.26;MQ0=0;QD=37.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL23AP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521854    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
8    608018    rs6993769    C    T    318.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=19.9;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    0/1:6,10:16:99:348,0,198
8    608034    rs10090260    T    C    668.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:701,54,0
8    608279    rs1703925    A    G    240.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=26.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:274,21,0
8    608864    rs1703924    C    G    130.44    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=0.736;QD=21.74;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:160,0,22
8    609051    rs71514178    G    C    244.02    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=17;Dels=0.0;FS=6.803;HRun=1;HaplotypeScore=0.0;MQ=51.29;MQ0=2;MQRankSum=-1.739;QD=14.35;ReadPosRankSum=0.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    0/1:7,10:17:99:274,0,201
8    609072    rs1669677    G    C    121.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.4;MQ0=2;QD=17.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:154,12,0
8    609223    .    G    A    111.35    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.55;MQ0=59;MQRankSum=2.933;QD=1.5;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    1/1:64,10:74:15.02:144,15,0
8    609235    rs112818091    C    G    93.06    MQFilter40;QDFilter2    AB=0.942;AC=1;AF=0.50;AN=2;BaseQRankSum=1.137;DB;DP=86;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=2.7766;MQ=9.85;MQ0=60;MQRankSum=1.919;QD=1.08;ReadPosRankSum=0.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:81,5:86:68.47:123,0,68
8    609833    rs59517622    C    G    33.97    MQFilter40;QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=26;Dels=0.0;FS=6.929;HRun=0;HaplotypeScore=0.5784;MQ=33.4;MQ0=4;MQRankSum=0.423;QD=1.31;ReadPosRankSum=-0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:20,6:26:63.96:64,0,331
8    609867    rs13262478    A    G    281.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.284;DB;DP=28;Dels=0.0;FS=1.674;HRun=1;HaplotypeScore=1.3302;MQ=47.8;MQ0=0;MQRankSum=-2.387;QD=10.04;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:12,16:28:99:311,0,339
8    609872    rs62486243    G    A    307.92    SnpCluster    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.402;DB;DP=32;Dels=0.0;FS=1.52;HRun=0;HaplotypeScore=5.0737;MQ=48.39;MQ0=0;MQRankSum=2.942;QD=9.62;ReadPosRankSum=-0.148;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:18,14:32:99:338,0,416
8    609879    rs12675313    A    C    252.42    SnpCluster    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9572;MQ=49.56;MQ0=0;MQRankSum=-2.154;QD=7.42;ReadPosRankSum=1.522;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:17,16:34:99:282,0,458
8    609880    rs12675823    T    C    254.08    SnpCluster    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2921;MQ=49.56;MQ0=0;MQRankSum=-2.205;QD=7.47;ReadPosRankSum=1.602;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:18,16:34:99:284,0,489
8    609901    rs62486244    A    G    499.34    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.768;DB;DP=39;Dels=0.0;FS=1.273;HRun=0;HaplotypeScore=0.9332;MQ=50.45;MQ0=0;MQRankSum=2.037;QD=12.8;ReadPosRankSum=0.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:19,20:39:99:529,0,500
8    618728    rs2271263    A    G    353.44    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.044;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.02;QD=11.05;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=L282;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_618598_618792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    0/1:18,14:32:99:383,0,575
8    623051    rs6559063    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518277    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    623061    rs6559064    G    A    131.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518277    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
8    623156    rs6559065    G    C    173.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518277    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
8    623593    rs55783038    G    A    898.63    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.859;DB;DP=71;Dels=0.0;FS=2.056;HRun=0;HaplotypeScore=3.4671;MQ=59.68;MQ0=0;MQRankSum=-1.327;QD=12.66;ReadPosRankSum=-1.003;SNPEFF_AMINO_ACID_CHANGE=A159;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_623289_624047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    0/1:33,38:71:99:929,0,1019
8    623696    rs61741834    G    A    936.81    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.65;MQ0=0;MQRankSum=-0.094;QD=14.41;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=T125I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_623289_624047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522706    GT:AD:DP:GQ:PL    0/1:32,33:65:99:967,0,959
8    623906    rs118014343    C    T    1100.29    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.369;DB;DP=87;Dels=0.0;FS=4.257;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.93;QD=12.65;ReadPosRankSum=-0.267;SNPEFF_AMINO_ACID_CHANGE=R149Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_623289_624047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:44,43:87:99:1130,0,1380
8    624214    rs62487384    G    A    281.97    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=16.59;ReadPosRankSum=-1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:7,10:17:99:312,0,182
8    665858    rs1869074    C    T    1400.46    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=95;Dels=0.0;FS=1.673;HRun=1;HaplotypeScore=1.9831;MQ=60.0;MQ0=0;MQRankSum=0.496;QD=14.74;ReadPosRankSum=-1.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERICH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262109    GT:AD:DP:GQ:PL    0/1:45,50:95:99:1430,0,1450
8    1496767    rs2906568    C    G    47.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.573;QD=5.27;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:6,3:9:77.43:77,0,162
8    1513814    rs3815235    A    G    438.97    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.908;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.28;MQ0=0;MQRankSum=0.415;QD=13.72;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:17,15:32:99:469,0,572
8    1574836    rs73671260    T    C    97.78    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=16;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.164;QD=6.11;ReadPosRankSum=-1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:9,7:16:99:128,0,324
8    1574848    rs73671261    C    T    139.15    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=17;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=1.22;QD=8.19;ReadPosRankSum=-1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:10,7:17:99:169,0,366
8    1581226    rs6995760    A    G    1448.63    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=85;Dels=0.0;FS=5.305;HRun=0;HaplotypeScore=2.7663;MQ=60.0;MQ0=0;MQRankSum=0.835;QD=17.04;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:38,47:85:99:1479,0,1218
8    1581267    rs6999936    T    C    877.71    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.834;DB;DP=46;Dels=0.0;FS=2.619;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.014;QD=19.08;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:18,28:46:99:908,0,513
8    1581299    rs7014284    C    G    548.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.053;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.191;QD=18.29;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:12,18:30:99:579,0,377
8    1581326    rs7014414    C    T    459.42    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.161;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=19.97;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:8,15:23:99:489,0,264
8    1581347    rs6995939    A    T    220.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.002;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=14.68;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    0/1:6,9:15:99:250,0,198
8    1626220    rs6558507    C    T    174.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356067    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
8    1728292    rs12546965    T    C    90.19    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.278;QD=8.2;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331222    GT:AD:DP:GQ:PL    0/1:7,4:11:99:120,0,255
8    1765425    rs61388742    T    C    179.14    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=17.91;ReadPosRankSum=-0.296;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR596;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385091    GT:AD:DP:GQ:PL    0/1:3,7:10:96.22:209,0,96
8    1791638    rs11136432    T    G    100.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=11.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    0/1:4,5:9:99:131,0,108
8    1806041    rs34286586    GATCGATCT    G    402.29    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=98.906;IndelType=D;MQ=55.26;MQ0=0;MQRankSum=-0.37;QD=33.52;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    0/1:3,9:12:99:441,0,253
8    1808439    rs13275000    G    C    61.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.684;QD=7.7;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    0/1:5,3:8:91.60:92,0,168
8    1814588    rs144305074    GAC    G    201.26    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.914;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=81.5763;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=0.529;QD=11.84;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    0/1:8,8:17:99:240,0,304
8    1817640    rs111801715    C    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382795    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    1857293    rs2294035    A    G    337.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:370,33,0
8    1857366    rs2294036    G    A    1012.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=24.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1046,120,0
8    1857367    rs2294037    T    C    1024.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.48;MQ0=0;QD=23.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1057,120,0
8    1857397    .    A    G    1008.70    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DP=69;Dels=0.0;FS=1.281;HRun=3;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.923;QD=14.62;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1039,0,1081
8    1857432    rs117235646    G    A    1499.69    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=4.339;DB;DP=100;Dels=0.0;FS=1.759;HRun=0;HaplotypeScore=0.9987;MQ=59.54;MQ0=0;MQRankSum=1.217;QD=15.0;ReadPosRankSum=0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    0/1:46,54:100:99:1530,0,1364
8    1857701    rs4876274    T    C    333.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=25.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    1/1:1,12:13:33.07:366,33,0
8    1870956    rs4242549    G    A    100.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.881;QD=11.17;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    0/1:5,4:9:99:131,0,168
8    1900855    rs7832438    A    G    729.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=28.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262112    GT:AD:DP:GQ:PL    1/1:0,26:26:63.17:763,63,0
8    1901110    rs74808197    G    C    258.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523596    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
8    1901177    rs80299596    A    G    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523596    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
8    1905132    rs3735876    G    A    1324.33    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.074;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.27;QD=12.98;ReadPosRankSum=-0.466;SNPEFF_AMINO_ACID_CHANGE=S1208;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_1904915_1906807;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520359    GT:AD:DP:GQ:PL    0/1:49,53:102:99:1354,0,1342
8    2005346    rs7833402    C    T    152.57    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:1,5:6:24.95:183,0,25
8    2005414    rs7833424    C    T    386.57    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=0.404;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.269;QD=24.16;ReadPosRankSum=-0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:3,13:16:77.83:417,0,78
8    2005675    rs3765207    C    T    446.48    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.995;DB;DP=22;Dels=0.0;FS=2.105;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.553;QD=20.29;ReadPosRankSum=0.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:6,16:22:99:476,0,185
8    2005676    rs3765208    A    G    448.12    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.774;DB;DP=22;Dels=0.0;FS=2.105;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.111;QD=20.37;ReadPosRankSum=0.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:6,16:22:99:478,0,183
8    2007230    rs6558591    A    C    147.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.609;DB;DP=18;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=1.4538;MQ=58.71;MQ0=0;MQRankSum=1.171;QD=8.18;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:12,6:18:99:177,0,351
8    2020366    rs13251504    A    C    54.64    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.5226;MQ=38.44;MQ0=0;MQRankSum=0.336;QD=3.9;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:7,7:14:84.63:85,0,128
8    2020377    rs143713480    G    GATGCTCTCTGCCCTTCGGCCATGAAAGCCTCCATCGTTTC    9675.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=861.2742;IndelType=I;MQ=37.44;MQ0=0;QD=284.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:24,3:34:78.21:9676,78,0
8    2020378    .    A    G    46.96    MQFilter40;QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.216;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.7869;MQ=37.44;MQ0=0;MQRankSum=1.714;QD=1.38;ReadPosRankSum=-2.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:27,4:34:76.95:77,0,190
8    2021421    rs2272720    G    T    414.77    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.004;DB;DP=29;Dels=0.0;FS=1.462;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.644;QD=14.3;ReadPosRankSum=-0.197;SNPEFF_AMINO_ACID_CHANGE=V321L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2021419_2021580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:16,13:29:99:445,0,441
8    2024207    rs7822836    A    C    500.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:533,39,0
8    2024405    rs3817698    G    A    159.09    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.443;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=7.95;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:14,6:20:99:189,0,514
8    2024437    rs3817699    C    T    118.37    SnpCluster    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.61;QD=6.96;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:10,7:17:99:148,0,330
8    2024446    rs3817700    C    T    62.31    SnpCluster    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=4.45;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:9,5:14:92.31:92,0,262
8    2024447    rs10109117    G    A    70.88    SnpCluster    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.313;QD=5.45;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:8,5:13:99:101,0,278
8    2027434    rs2235120    G    C    1082.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:0,28:28:84.27:1115,84,0
8    2027633    rs1440291    C    G    3626.69    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.019;DB;DP=239;Dels=0.0;FS=2.227;HRun=0;HaplotypeScore=2.3782;MQ=59.73;MQ0=0;MQRankSum=1.508;QD=15.17;ReadPosRankSum=-2.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:114,125:239:99:3627,0,3319
8    2040104    rs2235121    C    T    1161.74    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DB;DP=79;Dels=0.0;FS=7.33;HRun=0;HaplotypeScore=0.734;MQ=59.42;MQ0=0;MQRankSum=-1.192;QD=14.71;ReadPosRankSum=0.201;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519518    GT:AD:DP:GQ:PL    0/1:41,38:79:99:1192,0,1114
8    2040298    rs2235122    C    T    698.29    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=4.774;DB;DP=57;Dels=0.0;FS=6.993;HRun=0;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;MQRankSum=1.293;QD=12.25;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=A651;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2040174_2040348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:34,23:57:99:728,0,1013
8    2040337    rs6420202    T    C    1155.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=I664;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2040174_2040348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1188,99,0
8    2040415    rs893877    G    A    66.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.37;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519518    GT:AD:DP:GQ:PL    0/1:6,3:9:96.36:96,0,186
8    2040455    rs2235124    G    A    114.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.03;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519518    GT:AD:DP:GQ:PL    0/1:2,4:6:63.71:144,0,64
8    2042070    rs7828132    T    C    88.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=12.63;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518803    GT:AD:DP:GQ:PL    0/1:3,4:7:99:118,0,104
8    2048811    rs4876227    A    C    1163.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_AMINO_ACID_CHANGE=V287;SNPEFF_CODON_CHANGE=gtA/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2048666_2048844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523438    GT:AD:DP:GQ:PL    1/1:0,37:37:87.29:1196,87,0
8    2053942    rs12680413    T    C    362.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:395,30,0
8    2054012    rs12677887    C    T    1214.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:0,37:37:96.30:1248,96,0
8    2054171    rs3817705    C    T    1763.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=I383;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2054032_2054188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523438    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1796,132,0
8    2054195    rs3817706    C    G    1489.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519372    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1522,114,0
8    2054476    rs33927116    GA    G    171.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=19.5146;IndelType=D;MQ=61.53;MQ0=0;QD=24.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517520    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:213,21,0
8    2063920    rs34379172    CAT    C    1351.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=101.6452;IndelType=D;MQ=60.74;MQ0=0;QD=46.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:0,29:29:87.30:1394,87,0
8    2064121    rs12548396    C    T    464.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:497,36,0
8    2071002    rs6558607    T    C    346.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:380,30,0
8    2071261    rs71270475    A    AGAC    1290.45    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.469;DB;DP=34;FS=1.63;HRun=0;HaplotypeScore=129.6193;IndelType=I;MQ=53.48;MQ0=0;MQRankSum=-1.604;QD=37.95;ReadPosRankSum=-2.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:14,19:34:99:1329,0,512
8    2071306    rs6998711    A    G    340.85    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=2.926;DB;DP=32;Dels=0.0;FS=1.509;HRun=0;HaplotypeScore=0.9997;MQ=58.89;MQ0=0;MQRankSum=1.033;QD=10.65;ReadPosRankSum=-0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:21,11:32:99:371,0,610
8    2071309    rs6998712    A    T    352.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=58.89;MQ0=0;MQRankSum=0.264;QD=11.01;ReadPosRankSum=-0.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:20,12:32:99:382,0,644
8    2077072    rs2280902    A    G    267.75    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.88;DB;DP=21;Dels=0.0;FS=2.318;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.303;QD=12.75;ReadPosRankSum=-1.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262113    GT:AD:DP:GQ:PL    0/1:11,10:21:99:298,0,387
8    2088896    rs3736659    G    A    82.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=15;Dels=0.0;FS=9.249;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=5.51;ReadPosRankSum=-1.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519631    GT:AD:DP:GQ:PL    0/1:10,5:15:99:113,0,370
8    2112080    rs5888885    G    GTT    179.45    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=16;FS=2.363;HRun=11;HaplotypeScore=61.846;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=11.22;ReadPosRankSum=-0.323;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520779    GT:AD:DP:GQ:PL    0/1:10,5:16:99:218,0,190
8    2112130    rs1036689    G    A    247.85    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=23;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=10.78;ReadPosRankSum=1.088;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520779    GT:AD:DP:GQ:PL    0/1:12,11:23:99:278,0,369
8    2796277    rs585000    C    T    1391.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1425,105,0
8    2806920    rs5741961    G    GAAAGAAAAGA    7718.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;FS=0.0;HRun=0;HaplotypeScore=439.2696;IndelType=I;MQ=45.2;MQ0=0;QD=100.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:21,45:76:99:7718,184,0
8    2808520    rs688579    A    G    1577.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=58.44;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1610,132,0
8    2808532    rs688894    G    C    1822.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.05;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1856,138,0
8    2808860    rs1513337    T    G    1578.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.33;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1612,129,0
8    2811708    rs1979509    T    C    222.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.416;DB;DP=15;Dels=0.0;FS=4.832;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.12;QD=14.8;ReadPosRankSum=-1.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:6,9:15:99:252,0,175
8    2813083    rs4875856    G    C    1043.61    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.486;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.31;MQ0=0;MQRankSum=0.944;QD=15.58;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:30,36:66:99:1074,0,921
8    2813376    rs654126    T    C    298.39    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.644;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=9.63;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:19,12:31:99:328,0,691
8    2820335    rs666099    C    T    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
8    2820745    rs667859    G    C    920.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.108;DB;DP=77;Dels=0.0;FS=3.355;HRun=0;HaplotypeScore=0.7887;MQ=59.76;MQ0=0;MQRankSum=0.098;QD=11.95;ReadPosRankSum=2.465;SNPEFF_AMINO_ACID_CHANGE=L2974;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2820744_2820917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542608    GT:AD:DP:GQ:PL    0/1:44,33:77:99:950,0,1307
8    2830843    rs2670079    G    A    2179.36    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=133;Dels=0.0;FS=2.479;HRun=0;HaplotypeScore=1.5362;MQ=59.62;MQ0=0;MQRankSum=1.853;QD=16.39;ReadPosRankSum=0.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:63,70:133:99:2209,0,1884
8    2832139    rs667595    C    G    1483.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_AMINO_ACID_CHANGE=S2720;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2831973_2832146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1517,114,0
8    2836102    rs615578    C    G    952.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:985,72,0
8    2909992    rs6558702    G    A    1138.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=T2413M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2909984_2910169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1171,87,0
8    2910020    rs6558703    A    G    1507.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.49;MQ0=0;QD=33.5;SNPEFF_AMINO_ACID_CHANGE=L2404;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2909984_2910169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1540,120,0
8    2910223    rs6420209    C    T    1005.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1039,75,0
8    2910289    rs7004774    A    G    438.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.62;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,14:14:39.08:472,39,0
8    2948894    rs7843001    A    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
8    2954348    rs3112    C    A    539.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=38.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523062    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:573,42,0
8    2963875    rs35840839    G    A    120.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520561    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
8    2964003    rs10503192    T    C    1874.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=29.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520561    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1907,162,0
8    2965122    rs113534820    C    CTGTTTT    1503.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=75.7206;IndelType=I;MQ=37.97;MQ0=0;QD=88.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520561    GT:AD:DP:GQ:PL    1/1:1,15:17:48.16:1546,48,0
8    2965209    rs1531351    A    G    2697.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.07;MQ0=0;QD=35.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520561    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2731,208,0
8    2965244    rs3824271    T    C    3641.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1966;MQ=57.78;MQ0=0;QD=31.39;SNPEFF_AMINO_ACID_CHANGE=E2139;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_2965240_2965320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3641,274,0
8    2966072    rs3802291    G    T    900.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520561    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:933,72,0
8    2966328    rs3802292    T    C    348.05    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.801;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.68;QD=13.92;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520561    GT:AD:DP:GQ:PL    0/1:12,13:25:99:378,0,360
8    2967639    rs898512    G    T    2008.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.62;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520561    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2041,150,0
8    2975781    rs2045637    G    A    120.40    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6848;MQ=58.2;MQ0=0;MQRankSum=1.991;QD=9.26;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:8,5:13:99:150,0,226
8    2975905    rs2045638    A    G    707.99    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.71;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.68;MQ0=0;MQRankSum=-0.156;QD=12.21;ReadPosRankSum=-0.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:31,27:58:99:738,0,1096
8    3015556    rs3802295    A    G    127.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=57.05;MQ0=0;MQRankSum=-0.742;QD=15.96;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:2,6:8:24.20:158,0,24
8    3046208    rs2589291    A    C    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:72,0,34
8    3046635    rs898501    G    T    227.54    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.638;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.721;QD=7.85;ReadPosRankSum=-1.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:19,10:29:99:258,0,670
8    3062871    rs1867043    A    G    200.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=14.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:6,8:14:99:231,0,205
8    3071882    rs1442392    G    A    36.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,88
8    3087809    rs1442403    T    C    701.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:734,57,0
8    3141555    rs10099968    A    G    75.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
8    3141586    rs4875508    T    A    150.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
8    3165207    rs10103770    A    G    2249.49    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=161;Dels=0.0;FS=2.807;HRun=0;HaplotypeScore=1.7753;MQ=59.31;MQ0=0;MQRankSum=-0.222;QD=13.97;ReadPosRankSum=0.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:74,87:161:99:2279,0,2248
8    3165478    rs10089513    C    G    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.64;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,142
8    3165777    rs10091831    G    A    558.37    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=14.32;ReadPosRankSum=-0.885;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:19,20:39:99:588,0,620
8    3165814    rs1393843    A    C    1873.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.19;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1906,138,0
8    3166082    rs6558762    A    C    425.60    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=22;Dels=0.0;FS=8.073;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.134;QD=19.35;ReadPosRankSum=1.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:9,13:22:99:456,0,271
8    3201012    rs156075    C    T    2329.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.66;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2363,172,0
8    3201034    rs156076    G    T    1925.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.61;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1959,150,0
8    3205307    rs264310    T    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
8    3205792    rs264309    G    C    864.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,23:23:69.19:898,69,0
8    3205885    rs264308    G    C    55.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
8    3216576    rs34346316    T    C    904.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:938,69,0
8    3216948    rs34858861    TAA    T    37.92    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=12;FS=0.0;HRun=17;HaplotypeScore=117.1816;IndelType=D;MQ=49.5;MQ0=0;MQRankSum=-0.736;QD=3.16;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:5,5:12:20.93:77,0,21
8    3224825    rs35870800    CG    C    426.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=5;HaplotypeScore=98.2002;IndelType=D;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:2,13:15:42.11:468,42,0
8    3226919    rs270096    C    T    2385.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2419,178,0
8    3253768    rs3802303    C    T    119.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.922;QD=7.05;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=L710;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_3253716_3253903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:10,6:17:99:150,0,317
8    3253939    rs3802304    A    G    261    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.676;DB;DP=18;Dels=0.0;FS=2.345;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.774;QD=14.5;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:5,13:18:99:291,0,167
8    3253942    rs3802305    A    G    235.62    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=17;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=13.86;ReadPosRankSum=-0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:5,12:17:99:266,0,165
8    3253997    rs3802306    G    A    72.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,145
8    3263758    rs12543118    A    G    441.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.217;QD=12.63;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:20,15:35:99:472,0,629
8    3263813    rs10110730    G    T    180.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.276;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.201;QD=12.89;ReadPosRankSum=1.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:7,7:14:99:210,0,224
8    3263821    rs10098063    A    C    181.14    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=1.794;QD=12.08;ReadPosRankSum=0.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:8,7:15:99:211,0,248
8    3265590    rs10088378    C    T    6787.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=189;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4896;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_AMINO_ACID_CHANGE=Q497;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_3265421_3265747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,189:189:99:6787,491,0
8    3265845    rs11775235    C    T    172.33    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.996;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.996;QD=9.57;ReadPosRankSum=-1.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:11,7:18:99:202,0,385
8    3266909    rs10094820    G    T    215.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.528;QD=7.17;ReadPosRankSum=1.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:20,10:30:99:245,0,603
8    3351264    rs9314495    G    A    535.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:568,42,0
8    3432362    rs1564573    G    A    425.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:458,33,0
8    3443799    rs111428344    GA    G    256.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=11;HaplotypeScore=52.3879;IndelType=D;MQ=60.68;MQ0=0;QD=18.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:2,12:14:38.38:299,38,0
8    3474090    rs2469319    G    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
8    3474342    rs2291221    C    T    502.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:536,39,0
8    3565900    rs12674750    C    T    369.36    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=2.938;QD=16.79;ReadPosRankSum=0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    0/1:9,13:22:99:399,0,261
8    3566106    rs10105577    T    C    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=21.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
8    3855302    rs1863475    G    A    183.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318252    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:216,18,0
8    4494754    rs2617006    C    G    56.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=11.38;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400186    GT:AD:DP:GQ:PL    0/1:2,3:5:68.25:87,0,68
8    4494811    rs2617007    T    G    1481.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=38.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400186    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1515,114,0
8    4495107    rs2617008    G    C    899.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.17;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400186    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:933,72,0
8    6264130    rs2305023    G    C    30.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=5.12;ReadPosRankSum=-1.537;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522905    GT:AD:DP:GQ:PL    0/1:3,3:6:60.71:61,0,64
8    6264378    rs11787507    A    C    106.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=21.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:139,12,0
8    6264390    rs13255158    T    G    58.31    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=39.12;MQ0=0;MQRankSum=-0.727;QD=14.58;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:1,3:4:18.56:88,0,19
8    6266693    rs1550698    C    T    72.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
8    6266774    rs1550697    G    A    202.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=12.65;ReadPosRankSum=-0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:8,8:16:99:232,0,288
8    6266957    rs1550696    A    G    149.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=14.99;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:5,5:10:99:180,0,143
8    6272156    rs2442546    G    A    143.14    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=15.9;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:4,5:9:99:173,0,130
8    6272185    rs2440437    G    T    678.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:711,54,0
8    6272399    rs2305022    G    T    731.81    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=55;Dels=0.0;FS=3.89;HRun=1;HaplotypeScore=0.8941;MQ=58.3;MQ0=0;MQRankSum=1.047;QD=13.31;ReadPosRankSum=-0.632;SNPEFF_AMINO_ACID_CHANGE=V76;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6272286_6272404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:26,29:55:99:762,0,808
8    6272457    rs2305021    T    G    363.40    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.624;DB;DP=32;Dels=0.0;FS=4.959;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.491;QD=11.36;ReadPosRankSum=0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:17,15:32:99:393,0,577
8    6272477    rs2515415    A    G    724.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:758,57,0
8    6272481    rs2442545    C    G    666.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,19:19:54.14:700,54,0
8    6272532    rs2515417    T    A    324.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6653;MQ=55.21;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:358,27,0
8    6272543    rs55687318    A    C    128.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=53.03;MQ0=0;QD=18.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:161,12,0
8    6288879    rs2251956    A    T    246.01    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=16.4;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,235
8    6293866    rs3816402    C    T    72.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.29;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,139
8    6296550    rs2442513    G    T    1842.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.64;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=R171S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6296474_6296617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1875,141,0
8    6299532    rs2053618    A    G    239.64    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.532;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.06;QD=12.61;ReadPosRankSum=-0.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    0/1:9,10:19:99:270,0,316
8    6302106    rs35590577    C    A    315.97    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.343;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.28;MQ0=0;MQRankSum=0.954;QD=9.87;ReadPosRankSum=-0.603;SNPEFF_AMINO_ACID_CHANGE=P240H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6301914_6303411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522905    GT:AD:DP:GQ:PL    0/1:20,12:32:99:346,0,670
8    6302183    rs930557    G    C    489.26    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.535;DB;DP=34;Dels=0.0;FS=1.281;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.121;QD=14.39;ReadPosRankSum=-1.19;SNPEFF_AMINO_ACID_CHANGE=D266H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6301914_6303411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522905    GT:AD:DP:GQ:PL    0/1:16,18:34:99:519,0,460
8    6302418    rs2515569    A    G    1390.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.87;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=D344G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6301914_6303411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522905    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1423,108,0
8    6302671    rs2920676    C    T    480.92    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=45;Dels=0.0;FS=4.288;HRun=3;HaplotypeScore=2.5606;MQ=58.97;MQ0=0;MQRankSum=1.313;QD=10.69;ReadPosRankSum=-0.24;SNPEFF_AMINO_ACID_CHANGE=F428;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6301914_6303411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522905    GT:AD:DP:GQ:PL    0/1:25,20:45:99:511,0,857
8    6303025    rs2584    G    A    565.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.57;DB;DP=45;Dels=0.0;FS=2.64;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.126;QD=12.57;ReadPosRankSum=-0.582;SNPEFF_AMINO_ACID_CHANGE=T546;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6301914_6303411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522905    GT:AD:DP:GQ:PL    0/1:25,20:45:99:596,0,795
8    6312880    rs2515575    C    T    119.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344683    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
8    6371476    rs1982386    C    T    59.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=7.48;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325203    GT:AD:DP:GQ:PL    0/1:4,4:8:89.84:90,0,143
8    6389714    rs1984857    T    C    215.80    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=16.6;ReadPosRankSum=-1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325203    GT:AD:DP:GQ:PL    0/1:5,8:13:99:246,0,173
8    6389889    rs6559167    C    G    935.04    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.973;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8652;MQ=59.32;MQ0=0;MQRankSum=-0.433;QD=13.75;ReadPosRankSum=0.295;SNPEFF_AMINO_ACID_CHANGE=A136;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6389853_6390008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325203    GT:AD:DP:GQ:PL    0/1:33,35:68:99:965,0,824
8    6390027    rs2515481    A    G    401.25    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.987;DB;DP=29;Dels=0.0;FS=1.992;HRun=1;HaplotypeScore=0.0;MQ=57.57;MQ0=0;MQRankSum=-0.417;QD=13.84;ReadPosRankSum=1.338;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325203    GT:AD:DP:GQ:PL    0/1:16,13:29:99:431,0,549
8    6420534    rs3739391    A    G    461.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_6420168_6420930;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325203    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:495,39,0
8    6582188    rs66771516    TACCGTTA    T    485.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=82.9815;IndelType=D;MQ=37.69;MQ0=0;QD=69.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285518    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:528,21,0
8    6582229    rs2911978    C    A    331.33    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.98;MQ0=0;MQRankSum=-1.516;QD=22.09;ReadPosRankSum=0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285518    GT:AD:DP:GQ:PL    0/1:3,12:15:80.96:361,0,81
8    6582485    rs2980686    A    C    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=53.95;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285518    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
8    6614542    rs10099887    A    G    36.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285518    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:66,0,74
8    6614559    rs10112544    G    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285518    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:72,0,66
8    6614606    rs10102758    A    G    128.56    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=10.71;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285518    GT:AD:DP:GQ:PL    0/1:7,5:12:99:159,0,233
8    6669949    rs2553728    T    C    106.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=10.7;ReadPosRankSum=-1.668;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430797    GT:AD:DP:GQ:PL    0/1:5,5:10:99:137,0,177
8    6673252    rs58112583    A    G    168.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.365;QD=16.87;ReadPosRankSum=0.633;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405979    GT:AD:DP:GQ:PL    0/1:4,6:10:99:199,0,126
8    6673377    rs11338621    CA    C    1215.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=1;HaplotypeScore=88.9772;IndelType=D;MQ=58.03;MQ0=0;QD=40.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405979    GT:AD:DP:GQ:PL    1/1:0,30:30:90.30:1257,90,0
8    6673574    rs2738077    G    C    104.87    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.97;ReadPosRankSum=0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405979    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:135,0,25
8    6681256    rs9772979    A    C    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.33;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405979    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,148
8    6682549    rs74326288    T    C    112.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.922;QD=14.02;ReadPosRankSum=0.421;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405979    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,138
8    6690173    rs2978902    G    C    415.88    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=2.061;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.509;QD=11.24;ReadPosRankSum=1.152;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405979    GT:AD:DP:GQ:PL    0/1:23,14:37:99:446,0,693
8    6690215    rs2978901    G    C    640.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.922;DB;DP=65;Dels=0.0;FS=2.493;HRun=0;HaplotypeScore=0.7887;MQ=59.29;MQ0=0;MQRankSum=0.676;QD=9.85;ReadPosRankSum=-1.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405979    GT:AD:DP:GQ:PL    0/1:39,26:65:99:670,0,1325
8    6690276    rs2741098    T    C    1210.22    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=100;Dels=0.0;FS=1.648;HRun=1;HaplotypeScore=0.7887;MQ=59.35;MQ0=0;MQRankSum=0.292;QD=12.1;ReadPosRankSum=-0.489;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XKR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405979    GT:AD:DP:GQ:PL    0/1:55,45:100:99:1240,0,1649
8    6728198    rs1047031    C    T    720.74    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=58;Dels=0.0;FS=2.278;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.639;QD=12.43;ReadPosRankSum=-0.67;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297439    GT:AD:DP:GQ:PL    0/1:31,27:58:99:751,0,857
8    6728518    rs2702885    C    G    138.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297439    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:171,12,0
8    6728574    rs2741124    G    A    87.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297439    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
8    6735300    rs2293958    T    A    977.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297439    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1011,75,0
8    6735399    rs11362    C    T    953.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=32.89;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_6735319_6735544;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297439    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:987,72,0
8    6735423    rs1800972    C    G    634.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.28;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_6735319_6735544;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297439    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:668,51,0
8    6782271    rs712276    A    G    371.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.299;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=59.33;MQ0=0;MQRankSum=-0.85;QD=13.28;ReadPosRankSum=-0.069;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297436    GT:AD:DP:GQ:PL    0/1:14,14:28:99:402,0,450
8    6793322    rs2702867    T    C    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.57;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297435    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,109
8    6793540    rs736227    C    T    1307    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=2.474;DB;DP=78;Dels=0.0;FS=0.887;HRun=0;HaplotypeScore=0.0;MQ=59.88;MQ0=0;MQRankSum=0.055;QD=16.76;ReadPosRankSum=0.458;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297435    GT:AD:DP:GQ:PL    0/1:34,44:78:99:1337,0,840
8    6794114    rs2741680    G    C    119.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.9;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297435    GT:AD:DP:GQ:PL    0/1:2,4:6:63.18:149,0,63
8    6873734    rs147777993    T    G    68.27    MQFilter40    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.95;MQ0=1;MQRankSum=-1.2;QD=3.59;ReadPosRankSum=1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535841    GT:AD:DP:GQ:PL    0/1:8,11:19:98.27:98,0,112
8    6895876    rs11985076    T    C    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.1;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    6896059    rs4841817    A    C    1697.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=55.21;MQ0=0;QD=30.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1731,135,0
8    6896083    rs4840666    G    T    1963.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=55.13;MQ0=0;MQRankSum=-0.808;QD=32.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:1,60:61:99:1997,156,0
8    6896146    rs17078556    G    C    1996.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.28;MQ0=0;QD=30.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2030,153,0
8    6896161    rs35196527    T    G    1923.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.75;MQ0=0;QD=31.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1957,147,0
8    6896167    rs34725312    A    G    1792.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=56.63;MQ0=0;QD=30.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:1,57:59:99:1825,135,0
8    6896233    rs4621824    C    T    1528.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.67;MQ0=0;QD=34.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1562,120,0
8    6896314    rs4345578    A    G    633.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6439;MQ=55.45;MQ0=0;QD=30.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:666,51,0
8    6896344    rs4342629    T    C    531.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:565,42,0
8    6896413    rs4342630    G    C    153.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:186,15,0
8    6896421    rs4342631    G    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
8    6896688    rs13256091    A    T    32.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.41;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    0/1:3,2:5:62.06:62,0,106
8    6896832    rs4601339    G    T    886.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,28:28:66.22:919,66,0
8    6896883    rs4367573    G    C    133.16    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.332;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=7.83;ReadPosRankSum=1.247;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    0/1:11,6:17:99:163,0,378
8    6896894    rs4601340    G    T    443.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:476,36,0
8    6896960    rs4642671    C    A    213.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DEFA7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382676    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
8    6912844    rs45477802    T    C    105.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.07;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330590    GT:AD:DP:GQ:PL    0/1:3,4:7:99:135,0,103
8    6913031    rs2272719    G    A    397.93    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.312;QD=15.3;ReadPosRankSum=1.672;SNPEFF_AMINO_ACID_CHANGE=T69;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_6912831_6913065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330590    GT:AD:DP:GQ:PL    0/1:12,14:26:99:428,0,346
8    6913850    rs10095331    A    G    77.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.34;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330590    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:107,0,29
8    6973276    rs150568204    CGGT    C    1122.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=191.7446;IndelType=D;MQ=42.78;MQ0=14;QD=16.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AF228730.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401387    GT:AD:DP:GQ:PL    1/1:15,52:37:84.27:1165,84,0
8    6973416    rs6996037    G    A    2621.89    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=3.599;DB;DP=217;DS;Dels=0.0;FS=4.877;HRun=1;HaplotypeScore=2.3574;MQ=55.64;MQ0=3;MQRankSum=1.688;QD=12.08;ReadPosRankSum=-0.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AF228730.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401387    GT:AD:DP:GQ:PL    0/1:118,98:217:99:2652,0,3653
8    6973489    rs9694198    G    A    4162.18    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.413;DB;DP=221;DS;Dels=0.0;FS=1.097;HRun=0;HaplotypeScore=0.8667;MQ=58.08;MQ0=3;MQRankSum=1.745;QD=18.83;ReadPosRankSum=0.281;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AF228730.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401387    GT:AD:DP:GQ:PL    0/1:90,131:221:99:4162,0,2844
8    7005534    rs4518693    C    T    96.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.2;MQ0=0;MQRankSum=-0.72;QD=16.04;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AF228730.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528310    GT:AD:DP:GQ:PL    0/1:2,4:6:53.33:126,0,53
8    7005929    rs62489208    C    G    101.32    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.4;MQ0=0;MQRankSum=-0.361;QD=11.26;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AF228730.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410129    GT:AD:DP:GQ:PL    0/1:5,4:9:99:131,0,182
8    7055814    .    G    A    113.23    MQFilter40    AC=2;AF=1.00;AN=2;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.24;MQ0=42;QD=2.06;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AF228730.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408640    GT:AD:DP:GQ:PL    1/1:1,54:55:17.96:146,18,0
8    7153384    .    A    G    569.61    MQFilter40    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.559;DP=206;DS;Dels=0.0;FS=7.662;HRun=3;HaplotypeScore=2.8155;MQ=21.35;MQ0=123;MQRankSum=-2.803;QD=2.77;ReadPosRankSum=1.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400158    GT:AD:DP:GQ:PL    0/1:177,29:206:99:600,0,1595
8    7154617    rs35713605    T    A    3964.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=53.59;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1195F20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529456    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3964,304,0
8    7154917    rs62488791    A    C    1170.25    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=2.189;DB;DP=72;Dels=0.0;FS=10.781;HRun=3;HaplotypeScore=0.9894;MQ=50.81;MQ0=0;MQRankSum=-5.123;QD=16.25;ReadPosRankSum=-1.577;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1195F20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529456    GT:AD:DP:GQ:PL    0/1:28,44:72:99:1200,0,833
8    7154939    .    C    T    1172.77    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DP=77;Dels=0.0;FS=4.729;HRun=1;HaplotypeScore=2.8319;MQ=52.44;MQ0=0;MQRankSum=-3.752;QD=15.23;ReadPosRankSum=1.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1195F20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529456    GT:AD:DP:GQ:PL    0/1:33,44:77:99:1203,0,869
8    7154979    rs143756239    C    G    1250.16    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.909;DB;DP=84;Dels=0.0;FS=2.94;HRun=0;HaplotypeScore=1.8455;MQ=52.98;MQ0=0;MQRankSum=-0.983;QD=14.88;ReadPosRankSum=-0.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1195F20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529456    GT:AD:DP:GQ:PL    0/1:38,46:84:99:1280,0,1151
8    7155458    .    C    G    55.27    MQFilter40;QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=10.02;MQ0=48;MQRankSum=0.174;QD=0.88;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-1195F20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529456    GT:AD:DP:GQ:PL    0/1:48,14:63:51.83:85,0,52
8    7199282    .    A    G    90.69    MQFilter40    AC=2;AF=1.00;AN=2;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.56;MQ0=12;QD=5.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=USP17L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526929    GT:AD:DP:GQ:PL    1/1:0,18:18:14.98:123,15,0
8    7215329    rs9720695    T    C    65.90    QDFilter2    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.907;DB;DP=52;Dels=0.0;FS=8.809;HRun=0;HaplotypeScore=0.6651;MQ=46.06;MQ0=2;MQRankSum=-5.109;QD=1.27;ReadPosRankSum=-1.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:37,15:52:95.90:96,0,1338
8    7215344    rs55799624    C    T    275.92    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.036;DB;DP=52;Dels=0.0;FS=6.098;HRun=0;HaplotypeScore=0.6651;MQ=48.3;MQ0=1;MQRankSum=-4.786;QD=5.31;ReadPosRankSum=-1.726;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:36,16:52:99:306,0,1237
8    7215446    rs9693661    T    C    1081.62    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.943;DB;DP=156;Dels=0.0;FS=0.783;HRun=3;HaplotypeScore=0.9332;MQ=49.58;MQ0=4;MQRankSum=1.096;QD=6.93;ReadPosRankSum=-2.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:106,50:156:99:1112,0,3206
8    7215484    rs11779457    C    T    930.54    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.714;DB;DP=214;Dels=0.0;FS=2.245;HRun=0;HaplotypeScore=0.6651;MQ=46.66;MQ0=13;MQRankSum=-5.15;QD=4.35;ReadPosRankSum=-1.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:148,66:214:99:961,0,4549
8    7215694    rs9693671    A    G    2246.23    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=4.64;DB;DP=250;DS;Dels=0.0;FS=1.035;HRun=1;HaplotypeScore=1.4972;MQ=55.19;MQ0=0;MQRankSum=0.898;QD=8.98;ReadPosRankSum=-1.007;SNPEFF_AMINO_ACID_CHANGE=V236A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7215498_7216082;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:165,84:250:99:2276,0,5406
8    7217795    rs76373071    T    G    505.02    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=247;DS;Dels=0.0;FS=0.701;HRun=0;HaplotypeScore=4.747;MQ=41.58;MQ0=12;MQRankSum=-8.487;QD=2.04;ReadPosRankSum=1.176;SNPEFF_AMINO_ACID_CHANGE=R67;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7217759_7217854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:180,67:247:99:535,0,5826
8    7217837    rs3989701    A    C    174.16    MQFilter40;QDFilter2    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=2.968;DB;DP=239;DS;Dels=0.0;FS=0.879;HRun=0;HaplotypeScore=1.1567;MQ=37.61;MQ0=17;MQRankSum=-7.447;QD=0.73;ReadPosRankSum=-0.946;SNPEFF_AMINO_ACID_CHANGE=S53A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7217759_7217854;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:178,61:239:99:204,0,5183
8    7218621    rs3989699    C    G    1793.09    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.597;DB;DP=250;DS;Dels=0.0;FS=5.432;HRun=0;HaplotypeScore=5.6609;MQ=52.55;MQ0=0;MQRankSum=-4.986;QD=7.17;ReadPosRankSum=1.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:174,76:250:99:1823,0,5813
8    7218632    rs3989698    C    T    1661.31    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.03;DB;DP=250;DS;Dels=0.0;FS=13.032;HRun=0;HaplotypeScore=6.5478;MQ=51.24;MQ0=1;MQRankSum=-3.674;QD=6.65;ReadPosRankSum=2.595;SNPEFF_AMINO_ACID_CHANGE=G47R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7218632_7218758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:175,75:250:99:1691,0,5590
8    7218752    rs3989697    G    C    694.07    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=232;DS;Dels=0.0;FS=2.204;HRun=0;HaplotypeScore=1.8499;MQ=47.97;MQ0=7;MQRankSum=-8.754;QD=2.99;ReadPosRankSum=-0.395;SNPEFF_AMINO_ACID_CHANGE=L7V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7218632_7218758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400078    GT:AD:DP:GQ:PL    0/1:177,55:232:99:724,0,5909
8    7272329    rs144072748    C    T    57.91    MQFilter40;QDFilter2    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.187;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6921;MQ=22.16;MQ0=2;MQRankSum=-0.671;QD=1.87;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318157    GT:AD:DP:GQ:PL    0/1:23,7:31:87.91:88,0,475
8    7308386    rs1042797    T    C    967.97    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.13;MQ0=7;QD=20.6;SNPEFF_AMINO_ACID_CHANGE=H31R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7308086_7308422;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458665    GT:AD:DP:GQ:PL    1/1:0,47:47:87.21:1001,87,0
8    7308798    rs4840280    A    G    562.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.92;MQ0=2;QD=28.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297498    GT:AD:DP:GQ:PL    1/1:0,20:20:54.12:596,54,0
8    7315248    .    T    C    48    MQFilter40    AC=2;AF=1.00;AN=2;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.15;MQ0=6;QD=4.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317900    GT:AD:DP:GQ:PL    1/1:3,8:11:9:80,9,0
8    7315355    .    C    T    333.80    MQFilter40    AB=0.247;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.71;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=13.96;MQ0=35;MQRankSum=-0.101;QD=4.12;ReadPosRankSum=-1.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317900    GT:AD:DP:GQ:PL    0/1:20,61:81:70.36:364,0,70
8    7319990    .    C    G    814.08    MQFilter40    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=2.187;DP=48;Dels=0.0;FS=3.444;HRun=1;HaplotypeScore=0.0;MQ=23.22;MQ0=2;MQRankSum=0.277;QD=16.96;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297498    GT:AD:DP:GQ:PL    0/1:9,39:48:99:844,0,111
8    7343695    .    C    T    63.27    MQFilter40    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.98;MQ0=8;MQRankSum=-1.286;QD=2.75;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335479    GT:AD:DP:GQ:PL    0/1:14,9:23:93.26:93,0,261
8    7343806    rs148956195    C    G    494.32    MQFilter40    AB=0.291;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.832;DB;DP=86;Dels=0.0;FS=6.544;HRun=0;HaplotypeScore=0.9578;MQ=14.84;MQ0=49;MQRankSum=-0.053;QD=5.75;ReadPosRankSum=2.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335479    GT:AD:DP:GQ:PL    0/1:25,61:86:99:524,0,132
8    7366586    .    T    C    48    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=186;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=2.79;MQ0=183;QD=0.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB107B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355602    GT:AD:DP:GQ:PL    1/1:83,102:186:9:80,9,0
8    7404516    .    C    T    475.98    MQFilter40    AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.54;MQ0=8;QD=8.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1118M6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533250    GT:AD:DP:GQ:PL    1/1:4,49:54:45.05:509,45,0
8    7404612    rs146897419    C    A    80.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.06;MQ0=10;QD=3.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1118M6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533250    GT:AD:DP:GQ:PL    1/1:6,17:23:14.93:113,15,0
8    7575091    .    A    G    31.82    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=225;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=2.55;MQ0=223;QD=0.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530386    GT:AD:DP:GQ:PL    1/1:222,2:225:6.01:63,6,0
8    7673126    .    C    A    100.05    MQFilter40;QDFilter2    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DP=128;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=7.58;MQ0=108;MQRankSum=-0.347;QD=0.78;ReadPosRankSum=1.35;SNPEFF_AMINO_ACID_CHANGE=V9F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7673081_7673238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB107A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335021    GT:AD:DP:GQ:PL    0/1:76,52:128:76.69:130,0,77
8    7673308    rs78936136    A    G    76.57    MQFilter40    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.809;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=23.0;MQ0=0;MQRankSum=0.076;QD=2.64;ReadPosRankSum=1.656;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB107A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335021    GT:AD:DP:GQ:PL    0/1:22,7:29:99:107,0,522
8    7686323    .    G    A    428.57    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.468;DP=200;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=15.78;MQ0=90;MQRankSum=0.952;QD=2.14;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB106A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335186    GT:AD:DP:GQ:PL    0/1:140,60:200:99:459,0,1255
8    7686397    rs146195936    T    C    146.73    MQFilter40;QDFilter2    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.315;DB;DP=239;Dels=0.0;FS=2.674;HRun=0;HaplotypeScore=0.0;MQ=9.65;MQ0=177;MQRankSum=0.669;QD=0.61;ReadPosRankSum=-2.154;SNPEFF_AMINO_ACID_CHANGE=N40;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7686327_7686575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB106A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335186    GT:AD:DP:GQ:PL    0/1:171,67:239:99:177,0,443
8    7686701    rs78415101    T    A    78.74    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.53;MQ0=0;MQRankSum=-0.731;QD=13.12;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB106A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335186    GT:AD:DP:GQ:PL    0/1:1,5:6:12.64:109,0,13
8    7694034    .    A    G    149.10    MQFilter40;QDFilter2    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.45;MQ0=66;MQRankSum=-1.444;QD=1.84;ReadPosRankSum=-0.594;SNPEFF_AMINO_ACID_CHANGE=I10V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7693993_7694064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB104A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314265    GT:AD:DP:GQ:PL    0/1:32,49:81:33.08:179,0,33
8    7698442    .    C    A    1311.78    MQFilter40    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=2.471;DP=100;Dels=0.0;FS=5.245;HRun=4;HaplotypeScore=2.133;MQ=22.79;MQ0=7;MQRankSum=0.059;QD=13.12;ReadPosRankSum=0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB104A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314265    GT:AD:DP:GQ:PL    0/1:32,68:100:99:1342,0,470
8    7698527    .    T    G    432.94    MQFilter40    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DP=213;Dels=0.0;FS=3.177;HRun=0;HaplotypeScore=1.4105;MQ=18.29;MQ0=79;MQRankSum=-0.05;QD=2.03;ReadPosRankSum=0.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB104A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314265    GT:AD:DP:GQ:PL    0/1:155,58:213:99:463,0,1854
8    7698610    rs140952426    G    A    93.05    MQFilter40;QDFilter2    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=0.389;DB;DP=228;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.27;MQ0=149;MQRankSum=0.558;QD=0.41;ReadPosRankSum=-0.366;SNPEFF_AMINO_ACID_CHANGE=R38Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7698556_7698764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB104A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314265    GT:AD:DP:GQ:PL    0/1:166,62:228:99:123,0,693
8    7718187    rs3177011    T    G    483.99    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.878;DB;DP=55;Dels=0.0;FS=4.283;HRun=0;HaplotypeScore=0.8667;MQ=47.25;MQ0=7;MQRankSum=0.184;QD=8.8;ReadPosRankSum=-0.748;SNPEFF_AMINO_ACID_CHANGE=*104E;SNPEFF_CODON_CHANGE=Tag/Gag;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_8_7718168_7718487;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG11A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000434307    GT:AD:DP:GQ:PL    0/1:35,20:55:99:514,0,872
8    7718266    rs3860876    A    T    832.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=33.38;MQ0=3;QD=28.71;SNPEFF_AMINO_ACID_CHANGE=S52C;SNPEFF_CODON_CHANGE=Agc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_7718168_7718504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326625    GT:AD:DP:GQ:PL    1/1:0,29:29:75.21:866,75,0
8    7720995    .    T    C    128.05    MQFilter40;QDFilter2    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.302;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.55;MQ0=55;MQRankSum=-2.039;QD=1.51;ReadPosRankSum=-0.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326625    GT:AD:DP:GQ:PL    0/1:56,29:85:99:158,0,264
8    7791916    .    T    A    376.10    MQFilter40    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DP=128;Dels=0.0;FS=1.367;HRun=0;HaplotypeScore=0.6651;MQ=17.01;MQ0=53;MQRankSum=-3.33;QD=2.94;ReadPosRankSum=-0.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400120    GT:AD:DP:GQ:PL    0/1:79,49:128:99:406,0,854
8    7791947    .    G    T    419.01    MQFilter40    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.65;DP=148;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=2.9352;MQ=12.77;MQ0=87;MQRankSum=2.163;QD=2.83;ReadPosRankSum=-1.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400120    GT:AD:DP:GQ:PL    0/1:77,71:148:99:449,0,164
8    7792059    .    C    T    145.50    MQFilter40;QDFilter2    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.35;DP=163;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=6.76;MQ0=139;MQRankSum=1.596;QD=0.89;ReadPosRankSum=0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400120    GT:AD:DP:GQ:PL    0/1:70,93:163:16.39:175,0,16
8    7826058    .    G    T    57.73    MQFilter40;QDFilter2    AB=0.913;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DP=93;Dels=0.0;FS=2.57;HRun=1;HaplotypeScore=0.0;MQ=14.34;MQ0=53;MQRankSum=3.343;QD=0.62;ReadPosRankSum=1.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=USP17L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527080    GT:AD:DP:GQ:PL    0/1:84,8:93:87.72:88,0,576
8    7826073    .    T    C    42.71    MQFilter40;QDFilter2    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.505;DP=88;Dels=0.0;FS=2.465;HRun=2;HaplotypeScore=0.5784;MQ=16.24;MQ0=45;MQRankSum=3.217;QD=0.49;ReadPosRankSum=2.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=USP17L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527080    GT:AD:DP:GQ:PL    0/1:80,8:88:72.71:73,0,712
8    7826075    .    G    C    42.71    MQFilter40;QDFilter2    AB=0.908;AC=1;AF=0.50;AN=2;BaseQRankSum=1.174;DP=87;Dels=0.0;FS=2.44;HRun=0;HaplotypeScore=0.5784;MQ=16.97;MQ0=43;MQRankSum=3.032;QD=0.49;ReadPosRankSum=3.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=USP17L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527080    GT:AD:DP:GQ:PL    0/1:79,8:87:72.71:73,0,716
8    7826109    rs185618597    C    T    36.74    MQFilter40;QDFilter2    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.043;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.69;MQ0=16;MQRankSum=2.969;QD=0.64;ReadPosRankSum=-2.932;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=USP17L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527080    GT:AD:DP:GQ:PL    0/1:49,8:57:66.74:67,0,724
8    7826122    .    G    A    39.74    MQFilter40;QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.989;DP=53;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=21.36;MQ0=13;MQRankSum=2.936;QD=0.75;ReadPosRankSum=-3.201;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=USP17L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527080    GT:AD:DP:GQ:PL    0/1:45,8:53:69.73:70,0,702
8    7830758    .    G    A    173.69    MQFilter40    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=0.119;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4328;MQ=18.31;MQ0=17;MQRankSum=-0.154;QD=3.34;ReadPosRankSum=-0.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=USP17L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530484    GT:AD:DP:GQ:PL    0/1:35,17:52:99:204,0,366
8    7830776    .    G    A    83.56    MQFilter40;QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.841;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3983;MQ=18.52;MQ0=15;MQRankSum=-0.415;QD=1.61;ReadPosRankSum=0.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=USP17L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530484    GT:AD:DP:GQ:PL    0/1:38,14:52:99:114,0,475
8    7883059    .    G    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.52;MQ0=8;QD=2.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519497    GT:AD:DP:GQ:PL    1/1:2,10:12:6.02:67,6,0
8    7885750    rs76967991    A    T    131.38    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.868;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=22.49;MQ0=1;MQRankSum=0.651;QD=6.57;ReadPosRankSum=-0.434;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519497    GT:AD:DP:GQ:PL    1/1:1,19:20:15.03:164,15,0
8    7885778    rs62494526    G    C    564.50    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.06;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9452;MQ=30.9;MQ0=1;MQRankSum=1.016;QD=18.21;ReadPosRankSum=1.255;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519497    GT:AD:DP:GQ:PL    1/1:1,30:31:48.14:598,48,0
8    7885901    rs62494527    C    G    197.29    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.43;MQ0=12;QD=6.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519497    GT:AD:DP:GQ:PL    1/1:11,20:31:21.06:230,21,0
8    7885929    rs62494528    G    A    139.95    MQFilter40    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=1.9;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=14.49;MQ0=22;MQRankSum=2.84;QD=2.41;ReadPosRankSum=0.881;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519497    GT:AD:DP:GQ:PL    0/1:45,12:58:61.81:170,0,62
8    7886063    .    T    C    61.43    MQFilter40;QDFilter2    AB=0.026;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=9.77;MQ0=25;MQRankSum=-1.47;QD=1.62;ReadPosRankSum=1.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519497    GT:AD:DP:GQ:PL    0/1:1,37:38:18.45:91,0,18
8    8042564    rs148108487    G    A    151.51    MQFilter40    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.54;MQ0=0;MQRankSum=0.067;QD=16.83;ReadPosRankSum=-0.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-556O5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509557    GT:AD:DP:GQ:PL    0/1:2,7:9:35:182,0,35
8    8042603    rs74798698    T    C    49.53    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.35;MQ0=0;MQRankSum=-1.537;QD=7.08;ReadPosRankSum=1.537;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-556O5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509557    GT:AD:DP:GQ:PL    0/1:3,4:7:79.52:80,0,95
8    8092025    rs2980436    G    A    1807.41    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.51;DB;DP=133;Dels=0.0;FS=6.588;HRun=1;HaplotypeScore=2.3235;MQ=57.95;MQ0=0;MQRankSum=0.286;QD=13.59;ReadPosRankSum=-0.353;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-556O5.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518201    GT:AD:DP:GQ:PL    0/1:65,68:133:99:1837,0,1975
8    8092174    rs2955584    A    G    204.04    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.617;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.28;MQ0=0;MQRankSum=-3.773;QD=7.56;ReadPosRankSum=-0.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-556O5.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518201    GT:AD:DP:GQ:PL    0/1:18,9:27:99:234,0,543
8    8093511    rs2955585    A    G    900.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=79;Dels=0.0;FS=8.288;HRun=0;HaplotypeScore=0.6651;MQ=59.71;MQ0=0;MQRankSum=1.372;QD=11.39;ReadPosRankSum=-0.45;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:39,39:79:99:930,0,1008
8    8093578    rs2945253    T    C    823.48    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.513;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5518;MQ=60.0;MQ0=0;MQRankSum=-1.236;QD=10.84;ReadPosRankSum=0.05;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:41,35:76:99:853,0,1235
8    8093592    rs2945252    G    T    960.69    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.587;DB;DP=85;Dels=0.0;FS=0.823;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=11.3;ReadPosRankSum=0.62;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:49,36:85:99:991,0,1472
8    8093967    rs2955586    A    C    87.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.54;MQ0=0;MQRankSum=-0.55;QD=12.52;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:3,4:7:99:118,0,101
8    8094555    rs2945250    T    C    518.22    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.028;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.34;MQ0=0;MQRankSum=0.475;QD=14.4;ReadPosRankSum=1.426;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:19,17:36:99:548,0,626
8    8094726    rs2945249    G    A    1033.68    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.92;DB;DP=90;Dels=0.0;FS=1.9;HRun=0;HaplotypeScore=4.7557;MQ=58.9;MQ0=0;MQRankSum=-0.073;QD=11.49;ReadPosRankSum=-0.998;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:47,42:90:99:1064,0,1216
8    8094763    rs2980437    T    C    1065.92    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6023;MQ=59.08;MQ0=0;MQRankSum=-1.775;QD=12.84;ReadPosRankSum=-1.069;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1096,0,1368
8    8094825    rs2980438    T    C    847.03    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=3.224;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9312;MQ=59.0;MQ0=0;MQRankSum=-2.187;QD=16.61;ReadPosRankSum=0.681;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:21,29:51:99:877,0,596
8    8094870    rs2980439    G    A    476.57    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.215;DB;DP=30;Dels=0.0;FS=2.418;HRun=1;HaplotypeScore=1.9363;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=15.89;ReadPosRankSum=-1.294;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:13,17:30:99:507,0,409
8    8094961    rs2948294    A    G    95.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.28;MQ0=0;MQRankSum=0.0;QD=13.58;ReadPosRankSum=-1.754;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:3,4:7:95.07:125,0,95
8    8097849    rs2948308    C    T    41.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.29;ReadPosRankSum=-0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:2,3:5:59.82:71,0,60
8    8098038    rs2945232    T    C    146.17    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=15;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=9.74;ReadPosRankSum=0.752;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_8097891_8099954;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:8,7:15:99:176,0,291
8    8098079    rs2955587    A    G    156.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DB;DP=14;Dels=0.0;FS=2.276;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.154;QD=11.19;ReadPosRankSum=-0.545;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_8097891_8099954;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:7,7:14:99:187,0,234
8    8098169    rs1712646    A    G    100.17    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=2.881;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=7.71;ReadPosRankSum=-0.825;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_8097891_8099954;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:9,4:13:99:130,0,260
8    8098577    rs2948305    G    A    153.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.17;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=V119I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8097891_8099954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068020.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310542    GT:AD:DP:GQ:PL    0/1:3,5:8:93.13:183,0,93
8    8176221    rs13269488    C    T    700.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=G1222S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8175258_8176818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    1/1:0,21:21:57.15:733,57,0
8    8176387    .    C    CGGGGCG    646.06    PASS    AC=2;AF=1.00;AN=2;DP=10;FS=0.0;HRun=0;HaplotypeScore=51.2547;IndelType=I;MQ=55.5;MQ0=0;QD=64.61;SNPEFF_AMINO_ACID_CHANGE=P1166PPP;SNPEFF_CODON_CHANGE=ccg/cCGCCCCcg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_8_8175258_8176818;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    1/1:1,6:10:27.09:688,27,0
8    8176554    rs12549973    C    T    2261.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.65;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=A1111T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8175258_8176818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2295,178,0
8    8176825    rs6601691    A    G    796.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:830,63,0
8    8234077    rs4840952    G    C    322.72    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=41;Dels=0.0;FS=7.407;HRun=1;HaplotypeScore=0.9983;MQ=58.87;MQ0=0;MQRankSum=0.245;QD=7.87;ReadPosRankSum=-0.707;SNPEFF_AMINO_ACID_CHANGE=A614;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8233763_8235588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    0/1:26,15:41:99:353,0,757
8    8234192    rs4840953    G    C    171.37    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.792;DB;DP=20;Dels=0.0;FS=7.613;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=8.57;ReadPosRankSum=-0.951;SNPEFF_AMINO_ACID_CHANGE=S576C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8233763_8235588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    0/1:13,7:20:99:201,0,382
8    8234218    rs41314930    C    T    80.78    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.037;DB;DP=22;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.659;QD=3.67;ReadPosRankSum=0.332;SNPEFF_AMINO_ACID_CHANGE=P567;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8233763_8235588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    0/1:16,6:22:99:111,0,437
8    8234219    rs4840955    G    A    78.81    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.584;DB;DP=21;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.195;QD=3.75;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=P567L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8233763_8235588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    0/1:15,6:21:99:109,0,429
8    8234714    rs3896980    C    T    298.78    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=23;Dels=0.0;FS=7.346;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.2;QD=12.99;ReadPosRankSum=1.002;SNPEFF_AMINO_ACID_CHANGE=R402Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8233763_8235588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068353.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330777    GT:AD:DP:GQ:PL    0/1:9,13:23:99:329,0,274
8    8559832    rs9644774    G    A    47.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=7.85;ReadPosRankSum=0.406;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_8559448_8561616;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519106    GT:AD:DP:GQ:PL    0/1:3,3:6:77.07:77,0,105
8    8559898    rs11995449    G    A    148.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=14.82;ReadPosRankSum=1.001;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_8559448_8561616;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519106    GT:AD:DP:GQ:PL    0/1:3,6:10:63.81:178,0,64
8    8560536    rs12548737    G    A    75.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.04;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=V210M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8559448_8561616;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519106    GT:AD:DP:GQ:PL    0/1:2,3:5:64.91:105,0,65
8    8560602    rs2280560    C    T    46.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=15.65;SNPEFF_AMINO_ACID_CHANGE=P232S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8559448_8561616;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519106    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
8    8643387    rs10903311    G    A    120.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFHAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520091    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
8    8643582    rs2271340    C    G    1103.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFHAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276282    GT:AD:DP:GQ:PL    1/1:0,34:34:81.27:1137,81,0
8    8643725    rs2271341    T    A    165.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFHAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276282    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
8    8654898    rs3827812    C    T    371.73    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=57.77;MQ0=0;MQRankSum=-1.347;QD=17.7;ReadPosRankSum=-0.317;SNPEFF_AMINO_ACID_CHANGE=P1034;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8654875_8655001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFHAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276282    GT:AD:DP:GQ:PL    0/1:8,13:21:99:402,0,190
8    8655023    rs3748144    C    T    920.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFHAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276282    GT:AD:DP:GQ:PL    1/1:0,27:28:69.23:954,69,0
8    8747537    rs399123    T    C    502.27    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=29;Dels=0.0;FS=2.124;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.987;QD=17.32;ReadPosRankSum=1.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFHAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276282    GT:AD:DP:GQ:PL    0/1:13,16:29:99:532,0,400
8    8747894    rs429433    A    G    1796.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.56;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=L892P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8747571_8751155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFHAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276282    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1829,141,0
8    8865443    rs7834339    TCC    T    459.57    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.016;DB;DP=24;FS=0.0;HRun=2;HaplotypeScore=176.4729;IndelType=D;MQ=35.75;MQ0=0;MQRankSum=-0.339;QD=19.15;ReadPosRankSum=-1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250263    GT:AD:DP:GQ:PL    0/1:19,5:24:99:499,0,434
8    8869199    rs9650616    T    G    414.76    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.11;DB;DP=39;Dels=0.0;FS=1.239;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.127;QD=10.63;ReadPosRankSum=-1.402;SNPEFF_AMINO_ACID_CHANGE=P145;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_8869052_8869262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250263    GT:AD:DP:GQ:PL    0/1:22,17:39:99:445,0,694
8    8869277    rs28665409    G    A    662.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.408;DB;DP=35;Dels=0.0;FS=3.658;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.152;QD=18.92;ReadPosRankSum=-1.229;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521844    GT:AD:DP:GQ:PL    0/1:14,21:35:99:692,0,420
8    8873646    rs3895823    T    C    199.46    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.747;QD=24.93;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250263    GT:AD:DP:GQ:PL    0/1:1,7:8:20.16:229,0,20
8    8875593    rs2953808    T    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250263    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
8    8875764    rs7822129    G    T    332.87    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=21;Dels=0.0;FS=2.092;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.064;QD=15.85;ReadPosRankSum=-1.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250263    GT:AD:DP:GQ:PL    0/1:8,13:21:99:363,0,249
8    8887153    rs28520356    T    A    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250263    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
8    8887542    rs34853690    TAAC    T    977.17    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=3.586;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=152.4592;IndelType=D;MQ=56.56;MQ0=0;MQRankSum=-2.239;QD=25.71;ReadPosRankSum=0.047;SNPEFF_AMINO_ACID_CHANGE=*350?;SNPEFF_CODON_CHANGE=taa/t;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_8_8887302_8890849;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250263    GT:AD:DP:GQ:PL    0/1:15,23:38:99:1016,0,828
8    8999187    rs330924    G    C    239.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.971;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=13.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310455    GT:AD:DP:GQ:PL    0/1:9,9:18:99:269,0,277
8    9537635    rs12114182    G    A    276.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310430    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:309,24,0
8    9563797    rs11343041    CT    C    442.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.533;DB;DP=46;FS=0.0;HRun=13;HaplotypeScore=203.2624;IndelType=D;MQ=57.24;MQ0=0;MQRankSum=-1.467;QD=9.62;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310430    GT:AD:DP:GQ:PL    1/1:14,29:46:46.27:485,46,0
8    9564437    rs7006985    A    G    571.32    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.41;MQ0=0;MQRankSum=0.07;QD=14.65;ReadPosRankSum=-0.747;SNPEFF_AMINO_ACID_CHANGE=T225;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_9564321_9564507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000518281    GT:AD:DP:GQ:PL    0/1:18,21:39:99:601,0,559
8    9577794    rs111682310    A    AT    318.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=9;HaplotypeScore=62.3586;IndelType=I;MQ=60.9;MQ0=0;QD=26.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310430    GT:AD:DP:GQ:PL    1/1:1,11:12:33.09:360,33,0
8    9577804    rs72626642    C    A    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.67;MQ0=0;QD=5.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310430    GT:AD:DP:GQ:PL    1/1:0,16:16:9.03:117,9,0
8    9577940    rs6601360    T    C    1602.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=G365;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_9577884_9578055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000518281    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1635,123,0
8    9584450    rs10464998    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310430    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    9593081    rs4841208    A    C    424.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519930    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:458,36,0
8    9593121    rs4841209    T    A    202.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519930    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
8    9593138    rs4841210    G    C    154.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519930    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:188,15,0
8    9619348    rs4383974    C    G    77.30    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.32;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310430    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:107,0,29
8    9945470    rs4841277    T    C    80.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317173    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
8    10285825    rs10903326    T    G    1091.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.09;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317173    GT:AD:DP:GQ:PL    1/1:0,34:34:87.26:1124,87,0
8    10383138    rs35102108    G    A    355.30    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.686;DB;DP=33;Dels=0.0;FS=3.471;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.808;QD=10.77;ReadPosRankSum=2.182;SNPEFF_AMINO_ACID_CHANGE=G15R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10383056_10383249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328655    GT:AD:DP:GQ:PL    0/1:18,15:33:99:385,0,423
8    10383226    rs4521726    C    G    227.83    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.118;QD=20.71;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=P44R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10383056_10383249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328655    GT:AD:DP:GQ:PL    0/1:2,9:11:37.50:258,0,38
8    10464307    rs12542104    G    A    237.75    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=19;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=12.51;ReadPosRankSum=0.204;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:10,9:19:99:268,0,348
8    10464755    rs55642448    C    T    1647.78    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=1.066;DB;DP=112;Dels=0.0;FS=2.526;HRun=0;HaplotypeScore=2.7051;MQ=59.59;MQ0=0;MQRankSum=0.835;QD=14.71;ReadPosRankSum=0.027;SNPEFF_AMINO_ACID_CHANGE=G2285R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:54,58:112:99:1678,0,1633
8    10464885    rs56382513    T    C    1070.32    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.246;DB;DP=85;Dels=0.0;FS=3.026;HRun=1;HaplotypeScore=0.9789;MQ=59.18;MQ0=0;MQRankSum=-0.475;QD=12.59;ReadPosRankSum=1.016;SNPEFF_AMINO_ACID_CHANGE=S2241;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:47,38:85:99:1100,0,1499
8    10465097    rs4354268    C    T    2498.50    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=183;Dels=0.0;FS=1.184;HRun=2;HaplotypeScore=2.3639;MQ=59.62;MQ0=0;MQRankSum=0.645;QD=13.65;ReadPosRankSum=-0.133;SNPEFF_AMINO_ACID_CHANGE=E2171K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:89,94:183:99:2528,0,2664
8    10465748    rs11783478    T    C    1781.04    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=3.841;DB;DP=133;Dels=0.0;FS=1.387;HRun=1;HaplotypeScore=2.8213;MQ=59.13;MQ0=0;MQRankSum=0.344;QD=13.39;ReadPosRankSum=0.426;SNPEFF_AMINO_ACID_CHANGE=T1954A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:70,62:133:99:1811,0,2104
8    10465771    rs11785822    G    T    4437.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=58.9;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=A1946E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4437,328,0
8    10465942    rs28446662    T    A    2421.71    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.926;DB;DP=157;Dels=0.0;FS=0.6;HRun=1;HaplotypeScore=3.4883;MQ=59.56;MQ0=0;MQRankSum=1.062;QD=15.42;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=D1889V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:75,80:157:99:2452,0,2323
8    10466397    .    C    T    538.78    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.187;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.59;MQ0=0;MQRankSum=0.65;QD=9.62;ReadPosRankSum=1.152;SNPEFF_AMINO_ACID_CHANGE=G1737;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:34,22:56:99:569,0,1095
8    10466482    rs13267180    G    A    751.92    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.167;DB;DP=53;Dels=0.0;FS=1.065;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.223;QD=14.19;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=A1709V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:25,28:53:99:782,0,765
8    10467124    rs4841399    G    C    507    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.949;DB;DP=35;Dels=0.0;FS=1.356;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.501;QD=14.49;ReadPosRankSum=0.259;SNPEFF_AMINO_ACID_CHANGE=P1495R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:16,19:35:99:537,0,534
8    10467207    rs4840498    C    A    1990.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.32;SNPEFF_AMINO_ACID_CHANGE=R1467S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2024,150,0
8    10467576    rs4840499    T    C    347.04    HaplotypeScoreFilter13    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.259;DB;DP=59;Dels=0.0;FS=20.203;HRun=1;HaplotypeScore=45.8074;MQ=50.24;MQ0=0;MQRankSum=-1.196;QD=5.88;ReadPosRankSum=1.563;SNPEFF_AMINO_ACID_CHANGE=T1344;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:37,21:59:99:377,0,1059
8    10467578    rs143686100    TTTC    T    81.54    QDFilter2    AB=0.885;AC=1;AF=0.50;AN=2;BaseQRankSum=2.307;DB;DP=54;FS=60.02;HRun=0;HaplotypeScore=745.91;IndelType=D;MQ=48.72;MQ0=0;MQRankSum=-3.269;QD=1.51;ReadPosRankSum=-1.175;SNPEFF_AMINO_ACID_CHANGE=E1343-;SNPEFF_CODON_CHANGE=gaa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:45,7:54:99:121,0,2466
8    10467588    rs78920388    T    C    179.03    HaplotypeScoreFilter13    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.45;DB;DP=46;Dels=0.0;FS=8.288;HRun=0;HaplotypeScore=27.6865;MQ=45.83;MQ0=0;MQRankSum=-0.379;QD=3.89;ReadPosRankSum=0.024;SNPEFF_AMINO_ACID_CHANGE=E1340;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:25,20:46:99:209,0,735
8    10467589    rs9657518    T    C    173.64    HaplotypeScoreFilter13    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=45;Dels=0.0;FS=5.944;HRun=2;HaplotypeScore=26.6882;MQ=45.47;MQ0=0;MQRankSum=-1.504;QD=3.86;ReadPosRankSum=-0.404;SNPEFF_AMINO_ACID_CHANGE=E1340G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:24,20:45:99:204,0,662
8    10467652    rs4840501    G    C    439.84    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=35;Dels=0.03;FS=0.0;HRun=2;HaplotypeScore=12.8214;MQ=45.47;MQ0=0;MQRankSum=-0.256;QD=12.22;ReadPosRankSum=1.349;SNPEFF_AMINO_ACID_CHANGE=A1319G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:13,22:35:99:470,0,327
8    10468172    rs4840502    G    A    1818.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=R1146W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1851,135,0
8    10469233    rs35602868    A    G    528.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=57.77;MQ0=0;MQRankSum=0.526;QD=13.91;ReadPosRankSum=1.285;SNPEFF_AMINO_ACID_CHANGE=L792P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:19,19:38:99:558,0,598
8    10469817    rs6996950    G    A    2668.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=G597;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    1/1:0,88:89:99:2702,217,0
8    10470068    rs74990397    C    T    340.24    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.219;DB;DP=37;Dels=0.0;FS=3.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.054;QD=9.2;ReadPosRankSum=-0.725;SNPEFF_AMINO_ACID_CHANGE=G514S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10463859_10470856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    0/1:24,13:37:99:370,0,707
8    10470915    rs11773913    A    G    361.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:394,30,0
8    10470941    rs4840503    C    T    160.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
8    10480798    rs4532562    G    T    156.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.2;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382483    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:190,15,0
8    10530037    rs11250057    G    A    282.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329335    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
8    10530218    rs11250058    C    T    750.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=L15F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10530147_10530223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304519    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:784,57,0
8    10532355    rs4841419    T    C    234.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304519    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:268,21,0
8    10532401    rs4840505    A    G    87.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304519    GT:AD:DP:GQ:PL    1/1:0,5:5:11.99:120,12,0
8    10583203    rs10110624    A    G    119.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2135J3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554914    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
8    10583506    rs4841432    A    G    351.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-1.252;QD=14.05;ReadPosRankSum=-0.298;SNPEFF_AMINO_ACID_CHANGE=L303;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10581278_10584176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304501    GT:AD:DP:GQ:PL    0/1:10,15:25:99:381,0,311
8    10584212    rs10100209    C    T    270.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=18.05;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2135J3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554914    GT:AD:DP:GQ:PL    0/1:6,9:15:99:301,0,196
8    10623138    rs1078543    T    A    1058.66    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.935;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-1.242;QD=14.91;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=S254C;SNPEFF_CODON_CHANGE=Agc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_10622473_10623426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314787    GT:AD:DP:GQ:PL    0/1:36,35:71:99:1089,0,1197
8    10623633    rs891556    G    C    34.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2135J3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554914    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
8    10677601    rs2277130    G    C    522.42    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.88;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.76;MQ0=0;MQRankSum=-0.328;QD=15.37;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517607    GT:AD:DP:GQ:PL    0/1:18,16:34:99:552,0,594
8    10683623    rs2271357    G    A    566.71    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=4.301;DB;DP=41;Dels=0.0;FS=1.88;HRun=0;HaplotypeScore=2.993;MQ=60.0;MQ0=0;MQRankSum=-1.451;QD=13.82;ReadPosRankSum=-0.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2135J3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554914    GT:AD:DP:GQ:PL    0/1:22,19:41:99:597,0,608
8    10683776    rs2271356    T    A    1013.06    PASS    AB=0.352;AC=1;AF=0.50;AN=2;BaseQRankSum=2.664;DB;DP=54;Dels=0.0;FS=1.36;HRun=7;HaplotypeScore=1.7005;MQ=60.0;MQ0=0;MQRankSum=-0.01;QD=18.76;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2135J3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554914    GT:AD:DP:GQ:PL    0/1:19,35:54:99:1043,0,537
8    10683929    rs11776767    G    C    34.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2135J3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554914    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:64,0,33
8    10689050    rs6991526    T    C    148.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.45;MQ0=0;MQRankSum=-0.412;QD=9.88;ReadPosRankSum=-1.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PINX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520018    GT:AD:DP:GQ:PL    0/1:9,6:15:99:178,0,329
8    10782004    rs7832003    G    C    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XKR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304437    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
8    10782415    rs35097633    T    C    212.81    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=19.35;ReadPosRankSum=-2.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XKR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304437    GT:AD:DP:GQ:PL    0/1:3,8:11:81.66:243,0,82
8    10782442    rs4841459    A    C    54.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XKR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304437    GT:AD:DP:GQ:PL    0/1:3,5:8:84.32:84,0,94
8    10782445    rs36033512    T    G    77.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.84;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XKR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304437    GT:AD:DP:GQ:PL    0/1:3,3:6:89.91:107,0,90
8    10892530    rs2898254    G    A    132.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XKR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416569    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
8    11142389    rs34942523    C    CG    159.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=10;FS=0.0;HRun=5;HaplotypeScore=37.7464;IndelType=I;MQ=59.87;MQ0=0;MQRankSum=1.683;QD=15.98;ReadPosRankSum=-1.203;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526292    GT:AD:DP:GQ:PL    0/1:4,6:10:69.69:199,0,70
8    11142625    rs2272594    T    C    68.20    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.52;ReadPosRankSum=-0.55;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_11142603_11142825;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526292    GT:AD:DP:GQ:PL    0/1:3,5:8:70.37:98,0,70
8    11152957    rs77208521    C    T    150.99    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=18.87;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    0/1:3,5:8:49.42:181,0,49
8    11157371    rs2736387    A    C    188.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=20.98;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    0/1:3,6:9:96.79:219,0,97
8    11157460    rs3808513    T    G    660.12    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.023;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.942;QD=15.35;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    0/1:19,24:43:99:690,0,605
8    11162496    rs2164272    A    C    277.70    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.021;DB;DP=32;Dels=0.0;FS=8.538;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.755;QD=8.68;ReadPosRankSum=-0.64;SNPEFF_AMINO_ACID_CHANGE=L103;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11162350_11162523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526292    GT:AD:DP:GQ:PL    0/1:21,11:32:99:308,0,672
8    11162602    rs2256016    C    A    60.13    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8561;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=6.01;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528389    GT:AD:DP:GQ:PL    0/1:7,3:10:90.12:90,0,225
8    11162609    rs2060465    T    C    42.64    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8561;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=3.88;ReadPosRankSum=0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528389    GT:AD:DP:GQ:PL    0/1:8,3:11:72.63:73,0,295
8    11164012    rs17797443    T    C    31.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.2;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    0/1:4,2:6:61.16:61,0,140
8    11167233    rs7009857    G    A    245.44    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.531;QD=12.92;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    0/1:10,9:19:99:275,0,341
8    11174484    rs11784572    G    C    1173.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    1/1:0,31:31:90.30:1207,90,0
8    11177126    rs2251473    C    A    346.39    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.293;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=12.83;ReadPosRankSum=0.512;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    0/1:15,12:27:99:376,0,472
8    11177410    rs2293855    G    A    124.43    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=4.15;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=9.57;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    0/1:8,5:13:99:154,0,278
8    11188586    rs13253016    C    T    308.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.97;MQ0=2;QD=22.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221086    GT:AD:DP:GQ:PL    1/1:0,14:14:27.08:342,27,0
8    11188743    rs13260331    C    T    2284.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.98;MQ0=1;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=A43V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11188397_11189717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382435    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2318,183,0
8    11188752    rs6990563    G    A    2455.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.65;MQ0=1;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=G46D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11188397_11189717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382435    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2488,193,0
8    11189316    rs2736269    G    C    1201.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.55;MQ0=2;QD=27.31;SNPEFF_AMINO_ACID_CHANGE=C234S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11188397_11189717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382435    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1235,108,0
8    11189488    rs12681987    T    C    1521.04    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.56;MQ0=20;QD=16.01;SNPEFF_AMINO_ACID_CHANGE=V291;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11188397_11189717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382435    GT:AD:DP:GQ:PL    1/1:0,80:95:99:1554,156,0
8    11189535    rs12681991    T    C    1290.37    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=20.25;MQ0=24;QD=15.55;SNPEFF_AMINO_ACID_CHANGE=L307P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11188397_11189717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382435    GT:AD:DP:GQ:PL    1/1:0,83:83:99:1323,132,0
8    11189591    rs62488717    C    T    285.83    MQFilter40    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=4.979;DB;DP=64;Dels=0.0;FS=1.526;HRun=0;HaplotypeScore=2.84;MQ=28.55;MQ0=11;MQRankSum=-1.615;QD=4.47;ReadPosRankSum=0.912;SNPEFF_AMINO_ACID_CHANGE=R326W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11188397_11189717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382435    GT:AD:DP:GQ:PL    0/1:41,23:64:99:316,0,775
8    11197301    rs34237267    G    C    571.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=18.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:0,31:31:63.03:605,63,0
8    11197323    rs7008205    T    G    836    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.05;MQ0=0;QD=34.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:1,23:24:69.20:869,69,0
8    11213589    rs2250028    T    G    1027.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.69;MQ0=0;QD=33.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:0,31:31:87.26:1061,87,0
8    11213601    rs3021508    C    CCTT    2843.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=238.6902;IndelType=I;MQ=55.6;MQ0=0;QD=66.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:3,36:43:99:2886,123,0
8    11213881    rs2293858    G    C    1466.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=39.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1499,111,0
8    11215617    rs2249804    C    G    199.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:232,18,0
8    11216761    rs2293859    T    G    755.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:788,60,0
8    11218893    rs2736277    A    G    1768.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000525246    GT:AD:DP:GQ:PL    1/1:0,56:57:99:1802,141,0
8    11219334    rs2246606    G    A    596.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:630,45,0
8    11219386    rs2293860    G    T    221.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326605    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:254,21,0
8    11292542    rs2280803    C    T    113.95    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=6.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529305    GT:AD:DP:GQ:PL    0/1:9,8:17:99:144,0,297
8    11295511    rs2001463    A    G    544.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.92;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529305    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:577,48,0
8    11295747    rs79145090    A    G    112.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.13;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529305    GT:AD:DP:GQ:PL    0/1:3,4:7:94.83:143,0,95
8    11296091    rs1057750    G    A    2101.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=40.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529305    GT:AD:DP:GQ:PL    1/1:0,52:52:99:2134,157,0
8    11301753    rs3021513    A    C    1363.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.45;MQ0=0;QD=29.65;SNPEFF_AMINO_ACID_CHANGE=H56Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11301540_11302317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM167A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284486    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1397,114,0
8    11302044    rs3021514    G    T    351.67    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.725;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.45;MQ0=0;MQRankSum=-0.634;QD=19.54;ReadPosRankSum=-1.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM167A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528111    GT:AD:DP:GQ:PL    0/1:7,11:18:99:382,0,215
8    11302061    rs7830445    A    G    600.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.25;MQ0=0;QD=37.53;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_11301540_11302317;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM167A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284486    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:633,48,0
8    11400628    rs12386974    C    G    205.29    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=15.79;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259089    GT:AD:DP:GQ:PL    0/1:5,8:13:99:235,0,168
8    11400680    rs2245250    G    A    243.68    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=28;Dels=0.0;FS=5.764;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.695;QD=8.7;ReadPosRankSum=-0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259089    GT:AD:DP:GQ:PL    0/1:18,10:28:99:274,0,496
8    11400944    rs2245232    G    T    166.78    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=15.16;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259089    GT:AD:DP:GQ:PL    0/1:5,6:11:99:197,0,173
8    11403769    rs2244931    C    G    639.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259089    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:673,54,0
8    11405437    rs6994605    G    A    627.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259089    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:661,51,0
8    11414237    rs2306234    T    C    1305.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=F210;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11414167_11414346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529894    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1338,108,0
8    11415572    rs4841557    A    G    391.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.972;DB;DP=27;Dels=0.0;FS=7.489;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.363;QD=14.48;ReadPosRankSum=1.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526778    GT:AD:DP:GQ:PL    0/1:12,15:27:99:421,0,372
8    11415597    rs4841558    C    T    476.24    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=25;Dels=0.0;FS=2.706;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.827;QD=19.05;ReadPosRankSum=-0.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526778    GT:AD:DP:GQ:PL    0/1:8,17:25:99:506,0,250
8    11418773    rs4841561    C    T    68.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=8.61;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A167V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11417842_11418961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526097    GT:AD:DP:GQ:PL    0/1:4,4:8:98.90:99,0,139
8    11421358    rs10097005    C    A    48.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.39;ReadPosRankSum=-1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259089    GT:AD:DP:GQ:PL    0/1:5,4:9:78.50:78,0,179
8    11421384    rs10097015    C    T    76.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=7.64;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259089    GT:AD:DP:GQ:PL    0/1:6,4:10:99:106,0,219
8    11606312    rs3735819    T    C    601.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259090    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:635,51,0
8    11606364    rs10503425    G    C    713.45    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.633;DB;DP=46;Dels=0.0;FS=2.387;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=15.51;ReadPosRankSum=-1.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259090    GT:AD:DP:GQ:PL    0/1:20,26:46:99:743,0,645
8    11612698    rs804280    C    A    439.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259090    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:473,36,0
8    11614316    rs3729853    T    C    712.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.54;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259090    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:746,57,0
8    11614329    rs3729854    C    T    954.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.42;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259090    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:988,75,0
8    11615819    rs55968178    G    A    1297.21    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=3.854;DB;DP=82;Dels=0.0;FS=0.886;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.564;QD=15.82;ReadPosRankSum=1.664;SNPEFF_AMINO_ACID_CHANGE=A182;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11615802_11617509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528712    GT:AD:DP:GQ:PL    0/1:38,44:82:99:1327,0,980
8    11629119    rs804269    T    C    1576.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.139;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.455;QD=30.92;ReadPosRankSum=-1.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284503    GT:AD:DP:GQ:PL    1/1:2,49:51:88.74:1610,89,0
8    11629129    rs804268    C    G    1639.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7853;MQ=59.44;MQ0=0;MQRankSum=1.205;QD=35.63;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284503    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1672,102,0
8    11629241    rs804267    G    A    320.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284503    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:353,27,0
8    11636870    rs804255    T    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284503    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    11666218    rs71711801    GTCCCAC    G    486.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=63.0388;IndelType=D;MQ=42.64;MQ0=0;QD=54.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525571    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:529,27,0
8    11666451    rs1616534    C    T    291.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220584    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:325,27,0
8    11667179    rs8417    C    T    433.93    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.949;DB;DP=34;Dels=0.0;FS=1.373;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.017;QD=12.76;ReadPosRankSum=0.983;SNPEFF_AMINO_ACID_CHANGE=N3;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11667176_11667359;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528812    GT:AD:DP:GQ:PL    0/1:18,16:34:99:464,0,562
8    11683653    rs904011    T    C    2519.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.48;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11683533_11683724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538689    GT:AD:DP:GQ:PL    1/1:0,87:88:99:2553,199,0
8    11683818    rs2294136    T    C    515.81    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=25.79;ReadPosRankSum=2.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530337    GT:AD:DP:GQ:PL    0/1:5,15:20:99:546,0,135
8    11683864    rs2256918    C    A    129.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.28;MQ0=0;QD=18.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530337    GT:AD:DP:GQ:PL    1/1:0,4:7:12.04:162,12,0
8    11687938    rs1293313    G    C    1615.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=26.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531249    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1648,138,0
8    11687959    rs2294137    C    T    779.08    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=3.82;DB;DP=47;Dels=0.0;FS=4.091;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=16.58;ReadPosRankSum=1.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531249    GT:AD:DP:GQ:PL    0/1:21,26:47:99:809,0,555
8    11689119    rs9205    G    C    1031.96    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=74;Dels=0.0;FS=7.761;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.081;QD=13.95;ReadPosRankSum=-0.092;SNPEFF_AMINO_ACID_CHANGE=L213;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11689027_11689179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538689    GT:AD:DP:GQ:PL    0/1:38,36:74:99:1062,0,1198
8    11689228    rs2409836    T    G    563.56    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.564;DB;DP=32;Dels=0.0;FS=2.127;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.235;QD=17.61;ReadPosRankSum=-1.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525283    GT:AD:DP:GQ:PL    0/1:14,18:32:99:594,0,463
8    11695872    rs10903343    T    C    619.35    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=0.418;DB;DP=31;Dels=0.0;FS=2.674;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.242;QD=19.98;ReadPosRankSum=-0.594;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353047    GT:AD:DP:GQ:PL    0/1:11,20:31:99:649,0,329
8    11702594    rs709821    G    C    194.14    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.363;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.103;QD=11.42;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525076    GT:AD:DP:GQ:PL    0/1:8,9:17:99:224,0,206
8    11703048    rs1692811    C    G    51.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=8.5;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525076    GT:AD:DP:GQ:PL    0/1:3,3:6:81.01:81,0,89
8    11703420    rs1736082    C    T    99.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=16.6;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    0/1:2,4:6:58.73:130,0,59
8    11704350    rs1692815    G    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    11704457    rs1692816    A    C    554.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:588,45,0
8    11704719    rs1692817    C    A    259.19    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.865;DB;DP=15;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.865;QD=17.28;ReadPosRankSum=0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    0/1:7,8:15:99:289,0,125
8    11704878    rs1692818    C    G    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
8    11704897    rs1736086    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    11705139    rs2294138    C    T    330.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.907;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.253;QD=11.81;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    0/1:14,14:28:99:361,0,446
8    11705342    rs1736088    G    C    647.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.81;MQ0=0;QD=29.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:680,57,0
8    11705380    rs145929462    A    AAGCCCCAGCTGGGCGAGGC    5490.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=327.9613;IndelType=I;MQ=34.15;MQ0=0;QD=219.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    1/1:9,9:25:72.25:5491,72,0
8    11705381    .    A    C    36.60    MQFilter40;QDFilter2    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.15;MQ0=0;MQRankSum=1.77;QD=1.46;ReadPosRankSum=-2.341;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    0/1:20,2:25:58.38:67,0,58
8    11705442    rs2294139    G    T    86.42    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.905;DB;DP=21;Dels=0.0;FS=3.981;HRun=0;HaplotypeScore=0.0;MQ=51.41;MQ0=0;MQRankSum=0.978;QD=4.12;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    0/1:13,8:21:99:116,0,346
8    11705448    rs1692819    G    A    331.67    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.064;DB;DP=21;Dels=0.0;FS=1.833;HRun=0;HaplotypeScore=0.0;MQ=52.67;MQ0=0;MQRankSum=0.688;QD=15.79;ReadPosRankSum=0.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    0/1:8,13:21:99:362,0,153
8    11705677    rs2294140    C    G    304.20    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=36;Dels=0.0;FS=3.657;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.404;QD=8.45;ReadPosRankSum=-1.261;SNPEFF_AMINO_ACID_CHANGE=R81T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11705576_11706212;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540571    GT:AD:DP:GQ:PL    0/1:24,12:36:99:334,0,774
8    11706513    rs28592650    C    G    189.73    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.324;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.65;ReadPosRankSum=-0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    0/1:7,8:15:99:220,0,178
8    11706581    rs13332    T    G    829.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.63;SNPEFF_AMINO_ACID_CHANGE=T140;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11706555_11706673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345125    GT:AD:DP:GQ:PL    1/1:0,28:28:63.21:863,63,0
8    11708355    rs2272766    G    A    566.76    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=46;Dels=0.0;FS=3.432;HRun=0;HaplotypeScore=3.0129;MQ=58.99;MQ0=0;MQRankSum=-2.515;QD=12.32;ReadPosRankSum=0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505496    GT:AD:DP:GQ:PL    0/1:23,22:46:99:597,0,585
8    11708715    rs28577034    A    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524654    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:70,0,67
8    11710301    rs1293291    A    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524654    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
8    11710556    rs74936424    G    C    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524654    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
8    11710888    rs12338    G    C    185.50    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.673;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.165;QD=6.18;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=L26V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11710838_11710988;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345125    GT:AD:DP:GQ:PL    0/1:21,9:30:99:215,0,723
8    11710974    rs17154017    G    A    118.90    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.395;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.482;QD=5.95;ReadPosRankSum=-0.132;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525076    GT:AD:DP:GQ:PL    0/1:14,6:20:99:149,0,443
8    11777764    rs9329250    C    T    423.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9664;MQ=52.89;MQ0=0;QD=35.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E158P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524483    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:457,36,0
8    11777807    rs76958971    GA    G    313.02    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.575;DB;DP=25;FS=0.0;HRun=12;HaplotypeScore=267.0709;IndelType=D;MQ=48.47;MQ0=2;MQRankSum=2.681;QD=11.59;ReadPosRankSum=2.426;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E158P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524483    GT:AD:DP:GQ:PL    0/1:8,19:25:55.87:352,0,56
8    11777849    rs6987692    C    T    1590.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.445;DB;DP=62;Dels=0.0;FS=5.591;HRun=0;HaplotypeScore=0.0;MQ=51.92;MQ0=2;MQRankSum=3.235;QD=25.65;ReadPosRankSum=-1.976;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E158P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524483    GT:AD:DP:GQ:PL    1/1:7,53:62:36.84:1623,37,0
8    11777884    rs7463895    A    C    2094.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.631;DB;DP=78;Dels=0.0;FS=7.191;HRun=1;HaplotypeScore=4.3766;MQ=49.78;MQ0=3;MQRankSum=3.132;QD=26.86;ReadPosRankSum=1.871;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E158P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524483    GT:AD:DP:GQ:PL    1/1:9,69:78:45.68:2128,46,0
8    11777901    rs7464553    T    C    2486.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.012;DB;DP=90;Dels=0.0;FS=2.23;HRun=1;HaplotypeScore=1.5226;MQ=51.85;MQ0=3;MQRankSum=2.805;QD=27.62;ReadPosRankSum=1.476;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E158P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524483    GT:AD:DP:GQ:PL    1/1:8,82:90:93.43:2519,93,0
8    11777977    rs7461273    C    G    4225.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DB;DP=121;Dels=0.0;FS=3.655;HRun=2;HaplotypeScore=0.0;MQ=56.8;MQ0=3;MQRankSum=1.615;QD=34.92;ReadPosRankSum=1.262;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E158P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524483    GT:AD:DP:GQ:PL    1/1:4,117:121:99:4226,298,0
8    11786781    rs35890869    G    A    4272.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.872;DB;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.5;MQ0=4;MQRankSum=-1.163;QD=27.92;ReadPosRankSum=1.575;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E161P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341827    GT:AD:DP:GQ:PL    1/1:2,151:153:99:4272,310,0
8    11786877    rs71539749    GC    G    2382.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=61;FS=0.0;HRun=1;HaplotypeScore=673.7757;IndelType=D;MQ=43.03;MQ0=4;MQRankSum=-0.369;QD=31.35;ReadPosRankSum=1.505;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E161P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341827    GT:AD:DP:GQ:PL    1/1:1,75:61:99:2425,163,0
8    11786893    rs34012738    A    G    1603.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4787;MQ=35.7;MQ0=6;QD=21.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E161P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341827    GT:AD:DP:GQ:PL    1/1:0,72:73:99:1637,138,0
8    11786902    rs35890885    A    G    1532.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=34.23;MQ0=6;QD=23.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E161P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341827    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1566,138,0
8    11786925    rs36029352    C    T    1482.59    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.282;DB;DP=65;Dels=0.0;FS=6.256;HRun=0;HaplotypeScore=0.0;MQ=39.53;MQ0=5;MQRankSum=1.082;QD=22.81;ReadPosRankSum=1.704;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E161P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341827    GT:AD:DP:GQ:PL    1/1:5,60:65:41.99:1516,42,0
8    11786932    rs35626932    C    A    1634.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.33;DB;DP=67;Dels=0.0;FS=6.031;HRun=1;HaplotypeScore=0.9578;MQ=41.86;MQ0=5;MQRankSum=1.075;QD=24.4;ReadPosRankSum=0.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E161P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341827    GT:AD:DP:GQ:PL    1/1:5,62:67:53.03:1668,53,0
8    11831661    rs35283519    C    T    568.27    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.441;DB;DP=57;Dels=0.0;FS=1.951;HRun=1;HaplotypeScore=2.8298;MQ=58.44;MQ0=0;MQRankSum=0.294;QD=9.97;ReadPosRankSum=-1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB136;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382209    GT:AD:DP:GQ:PL    0/1:35,22:57:99:598,0,1154
8    11831948    rs7461062    T    C    1065.98    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=1.851;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-1.634;QD=17.48;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB136;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382209    GT:AD:DP:GQ:PL    0/1:27,34:61:99:1096,0,902
8    11832079    rs10108075    A    G    1228.95    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DB;DP=114;Dels=0.0;FS=5.185;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.191;QD=10.78;ReadPosRankSum=0.326;SNPEFF_AMINO_ACID_CHANGE=F10;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11832054_11832108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB136;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382209    GT:AD:DP:GQ:PL    0/1:65,49:114:99:1259,0,2097
8    11853596    rs11250186    A    G    1034.56    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.419;DB;DP=66;Dels=0.0;FS=7.03;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.033;QD=15.68;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB134;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382205    GT:AD:DP:GQ:PL    0/1:32,34:66:99:1065,0,1112
8    11891805    rs56051617    G    A    1496    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.548;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9051;MQ=58.87;MQ0=1;MQRankSum=-0.55;QD=13.98;ReadPosRankSum=0.746;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E160P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528715    GT:AD:DP:GQ:PL    0/1:54,53:107:99:1526,0,1600
8    11891905    rs4841680    A    G    1095    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.794;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4383;MQ=55.31;MQ0=0;MQRankSum=1.119;QD=13.04;ReadPosRankSum=1.262;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E160P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528715    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1125,0,1322
8    11891984    rs4841681    A    G    2245.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.51;MQ0=1;QD=30.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E160P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528715    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2279,178,0
8    11892020    rs9329259    C    T    516.58    MQFilter40    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.396;DB;DP=61;Dels=0.0;FS=1.116;HRun=0;HaplotypeScore=0.0;MQ=39.61;MQ0=1;MQRankSum=-0.373;QD=8.47;ReadPosRankSum=-0.251;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E160P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528715    GT:AD:DP:GQ:PL    0/1:32,29:61:99:547,0,882
8    11892052    rs9329260    G    A    375.05    MQFilter40    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=1.404;DB;DP=51;Dels=0.0;FS=5.357;HRun=1;HaplotypeScore=0.0;MQ=32.53;MQ0=1;MQRankSum=-2.172;QD=7.35;ReadPosRankSum=-1.485;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E160P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528715    GT:AD:DP:GQ:PL    0/1:29,22:51:99:405,0,785
8    11892059    rs9329261    G    A    258.20    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.675;DB;DP=45;Dels=0.0;FS=8.261;HRun=2;HaplotypeScore=0.0;MQ=33.8;MQ0=1;MQRankSum=-3.109;QD=5.74;ReadPosRankSum=-0.506;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E160P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528715    GT:AD:DP:GQ:PL    0/1:27,18:45:99:288,0,807
8    11892212    rs4840610    C    T    258.58    MQFilter40    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.674;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=39.34;MQ0=0;MQRankSum=1.82;QD=8.34;ReadPosRankSum=-1.101;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E160P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528715    GT:AD:DP:GQ:PL    0/1:19,12:31:99:289,0,362
8    11952667    rs71511030    A    T    423.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=16.31;MQ0=19;QD=10.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DEFB108P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527787    GT:AD:DP:GQ:PL    1/1:2,38:40:50.88:457,51,0
8    11952769    .    T    A    31.07    MQFilter40;QDFilter2    AB=0.897;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.268;DP=68;Dels=0.0;FS=17.433;HRun=1;HaplotypeScore=0.0;MQ=21.65;MQ0=15;MQRankSum=0.912;QD=0.46;ReadPosRankSum=0.992;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DEFB108P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527787    GT:AD:DP:GQ:PL    0/1:61,7:68:61.06:61,0,988
8    11952796    .    G    A    54.47    MQFilter40;QDFilter2    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=2.605;DP=55;Dels=0.0;FS=23.314;HRun=4;HaplotypeScore=0.0;MQ=18.22;MQ0=24;MQRankSum=1.853;QD=0.99;ReadPosRankSum=1.799;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DEFB108P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527787    GT:AD:DP:GQ:PL    0/1:50,5:55:84.46:84,0,509
8    11952800    .    T    C    54.47    MQFilter40;QDFilter2    AB=0.911;AC=1;AF=0.50;AN=2;BaseQRankSum=2.335;DP=56;Dels=0.0;FS=23.314;HRun=2;HaplotypeScore=0.0;MQ=18.17;MQ0=24;MQRankSum=1.92;QD=0.97;ReadPosRankSum=1.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DEFB108P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527787    GT:AD:DP:GQ:PL    0/1:51,5:56:84.46:84,0,513
8    11953002    .    T    C    81.41    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.91;MQ0=1;QD=20.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DEFB108P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527787    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:113,9,0
8    11985719    rs71511003    A    T    1182.79    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.176;DB;DP=131;Dels=0.0;FS=9.414;HRun=0;HaplotypeScore=0.0;MQ=40.97;MQ0=2;MQRankSum=-0.755;QD=9.03;ReadPosRankSum=0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=USP17L7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416902    GT:AD:DP:GQ:PL    0/1:76,55:131:99:1213,0,2090
8    11985833    rs2719618    C    T    1849.16    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=4.894;DB;DP=138;Dels=0.0;FS=4.058;HRun=0;HaplotypeScore=0.0;MQ=52.87;MQ0=0;MQRankSum=0.402;QD=13.4;ReadPosRankSum=0.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=USP17L7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416902    GT:AD:DP:GQ:PL    0/1:78,60:138:99:1879,0,2330
8    11986807    rs111638107    G    A    1457.89    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.047;DB;DP=223;DS;Dels=0.0;FS=4.249;HRun=0;HaplotypeScore=5.2685;MQ=49.84;MQ0=5;MQRankSum=-0.353;QD=6.54;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=USP17L7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416902    GT:AD:DP:GQ:PL    0/1:155,68:223:99:1488,0,4508
8    11986847    rs9771862    T    C    2211.54    HaplotypeScoreFilter13    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.999;DB;DP=155;DS;Dels=0.0;FS=4.508;HRun=1;HaplotypeScore=49.9467;MQ=47.6;MQ0=6;MQRankSum=-3.175;QD=14.27;ReadPosRankSum=-0.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=USP17L7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416902    GT:AD:DP:GQ:PL    0/1:53,102:155:99:2242,0,1556
8    11986849    rs12056796    C    T    758.63    HaplotypeScoreFilter13    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.504;DB;DP=146;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=49.158;MQ=48.66;MQ0=4;MQRankSum=-0.818;QD=5.2;ReadPosRankSum=0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=USP17L7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416902    GT:AD:DP:GQ:PL    0/1:101,45:146:99:789,0,3040
8    11986862    rs2698945    G    A    760.63    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.708;DB;DP=125;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.933;MQ=51.97;MQ0=1;MQRankSum=1.078;QD=6.09;ReadPosRankSum=0.944;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=USP17L7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416902    GT:AD:DP:GQ:PL    0/1:86,38:125:99:791,0,2653
8    11989873    rs5889395    T    TTG    438.05    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.711;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=157.6723;IndelType=I;MQ=54.03;MQ0=0;MQRankSum=0.592;QD=18.25;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:14,7:22:57.38:477,0,57
8    11989897    rs9329263    A    C    586.79    PASS    AB=0.233;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=30;Dels=0.0;FS=2.634;HRun=3;HaplotypeScore=3.9982;MQ=55.14;MQ0=0;MQRankSum=-1.534;QD=19.56;ReadPosRankSum=1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:7,23:30:99:617,0,130
8    11990195    rs13278959    C    T    3025.45    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=170;Dels=0.0;FS=8.169;HRun=2;HaplotypeScore=3.3607;MQ=45.78;MQ0=0;MQRankSum=0.369;QD=17.8;ReadPosRankSum=0.852;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:69,100:170:99:3055,0,1977
8    11990314    rs138217195    G    C    856.21    MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=194;Dels=0.0;FS=3.13;HRun=0;HaplotypeScore=4.2719;MQ=36.57;MQ0=0;MQRankSum=-2.94;QD=4.41;ReadPosRankSum=-0.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:137,57:194:99:886,0,3950
8    11990882    rs9720235    C    T    1848.59    PASS    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=6.401;DB;DP=250;DS;Dels=0.0;FS=13.594;HRun=0;HaplotypeScore=4.6159;MQ=58.75;MQ0=0;MQRankSum=0.062;QD=7.39;ReadPosRankSum=0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:182,68:250:99:1879,0,5448
8    11991107    rs9721012    T    G    3609.07    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.434;DB;DP=201;Dels=0.0;FS=6.187;HRun=1;HaplotypeScore=0.9933;MQ=59.34;MQ0=0;MQRankSum=0.394;QD=17.96;ReadPosRankSum=-1.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:74,127:201:99:3609,0,2107
8    11991110    rs9720197    G    A    3729.96    PASS    AB=0.369;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.104;DB;DP=198;Dels=0.0;FS=7.418;HRun=0;HaplotypeScore=0.9933;MQ=59.45;MQ0=0;MQRankSum=0.317;QD=18.84;ReadPosRankSum=-2.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:73,125:198:99:3730,0,2098
8    11994435    rs11777425    C    T    96.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=47.92;MQ0=0;MQRankSum=-0.72;QD=16.06;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:2,4:6:61.91:126,0,62
8    11994957    rs12543578    T    C    1359.67    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=1.427;DB;DP=172;Dels=0.0;FS=5.928;HRun=0;HaplotypeScore=1.8273;MQ=51.86;MQ0=0;MQRankSum=0.038;QD=7.91;ReadPosRankSum=0.961;SNPEFF_AMINO_ACID_CHANGE=K438R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11994677_11996586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:116,56:172:99:1390,0,3713
8    11995274    rs71511006    G    A    2815.22    MQFilter40    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=2.835;DB;DP=235;DS;Dels=0.0;FS=3.296;HRun=0;HaplotypeScore=3.5363;MQ=31.68;MQ0=32;MQRankSum=-1.374;QD=11.98;ReadPosRankSum=0.944;SNPEFF_AMINO_ACID_CHANGE=D332;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11994677_11996586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:89,146:235:99:2845,0,1487
8    11995484    rs74614551    C    T    1375.02    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=4.801;DB;DP=250;DS;Dels=0.0;FS=0.897;HRun=0;HaplotypeScore=4.25;MQ=32.24;MQ0=11;MQRankSum=0.916;QD=5.5;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=P262;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11994677_11996586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:175,75:250:99:1405,0,3776
8    11995785    .    T    A    730.92    MQFilter40    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=5.321;DP=250;DS;Dels=0.0;FS=3.377;HRun=1;HaplotypeScore=0.7887;MQ=19.08;MQ0=75;MQRankSum=0.255;QD=2.92;ReadPosRankSum=-0.66;SNPEFF_AMINO_ACID_CHANGE=H162L;SNPEFF_CODON_CHANGE=cAt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11994677_11996586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:166,84:250:99:761,0,1711
8    11996252    rs71237667    G    A    717.96    MQFilter40    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.499;DB;DP=227;DS;Dels=0.0;FS=8.143;HRun=1;HaplotypeScore=0.734;MQ=23.16;MQ0=49;MQRankSum=-1.451;QD=3.16;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=L6;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_11994677_11996586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:147,79:227:99:748,0,1985
8    11996270    .    G    A    665.14    MQFilter40    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.356;DP=209;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7074;MQ=23.76;MQ0=39;MQRankSum=0.105;QD=3.18;ReadPosRankSum=0.629;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_11994677_11996586;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    0/1:145,64:209:99:695,0,1922
8    11996310    rs28491134    T    C    1392.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=153;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=16.9;MQ0=44;QD=9.1;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_11994677_11996586;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333796    GT:AD:DP:GQ:PL    1/1:0,153:153:99:1426,153,0
8    12008344    rs4841762    G    A    212.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.39;MQ0=8;QD=10.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DEFB109P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529497    GT:AD:DP:GQ:PL    1/1:0,20:20:26.99:246,27,0
8    12008410    rs9694888    G    T    60.49    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.016;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.83;MQ0=9;MQRankSum=0.11;QD=1.12;ReadPosRankSum=1.425;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DEFB109P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529497    GT:AD:DP:GQ:PL    0/1:45,9:54:90.48:90,0,689
8    12008477    rs9692622    C    T    48.78    MQFilter40;QDFilter2    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=64;Dels=0.0;FS=4.064;HRun=1;HaplotypeScore=0.0;MQ=35.2;MQ0=0;MQRankSum=0.501;QD=0.76;ReadPosRankSum=-0.029;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DEFB109P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529497    GT:AD:DP:GQ:PL    0/1:55,9:64:78.77:79,0,1335
8    12030400    rs76811879    G    A    485.27    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.639;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=21.05;MQ0=6;MQRankSum=2.732;QD=10.11;ReadPosRankSum=-1.609;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511144    GT:AD:DP:GQ:PL    1/1:13,35:48:45.10:518,45,0
8    12030766    .    C    G    213    MQFilter40    AC=2;AF=1.00;AN=2;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.95;MQ0=34;QD=4.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM90A2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511144    GT:AD:DP:GQ:PL    1/1:29,19:48:27.02:246,27,0
8    12032727    .    A    G    163.79    MQFilter40    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=3.182;DP=71;Dels=0.0;FS=4.742;HRun=0;HaplotypeScore=1.8874;MQ=35.64;MQ0=0;MQRankSum=-1.601;QD=2.31;ReadPosRankSum=0.063;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525917    GT:AD:DP:GQ:PL    0/1:54,17:71:99:194,0,1537
8    12032775    rs71518567    G    T    152.80    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.831;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=35.76;MQ0=0;MQRankSum=0.283;QD=4.24;ReadPosRankSum=0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525917    GT:AD:DP:GQ:PL    0/1:27,9:36:99:183,0,736
8    12032909    rs78968513    A    G    34.85    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.88;MQ0=0;MQRankSum=1.38;QD=5.81;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525917    GT:AD:DP:GQ:PL    0/1:4,2:6:64.84:65,0,107
8    12032931    rs2719478    A    G    66.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=41.33;MQ0=0;MQRankSum=0.358;QD=13.33;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525917    GT:AD:DP:GQ:PL    0/1:2,3:5:51.94:97,0,52
8    12033120    rs189404344    C    T    56.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.78;MQ0=7;QD=5.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525917    GT:AD:DP:GQ:PL    1/1:7,3:10:9.01:89,9,0
8    12041190    rs146245204    C    T    242.04    MQFilter40;QDFilter2    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.229;DB;DP=189;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.65;MQ0=160;MQRankSum=-1.045;QD=1.28;ReadPosRankSum=-0.127;SNPEFF_AMINO_ACID_CHANGE=G126R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12040630_12041215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321602    GT:AD:DP:GQ:PL    0/1:61,128:189:82.36:272,0,82
8    12042864    .    CG    C    720.08    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.465;DP=80;FS=7.147;HRun=3;HaplotypeScore=467.9295;IndelType=D;MQ=26.11;MQ0=3;MQRankSum=1.152;QD=7.58;ReadPosRankSum=-0.501;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_8_12042743_12043034;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000321602    GT:AD:DP:GQ:PL    0/1:66,29:80:99:759,0,1932
8    12042880    rs142379100    T    C    1585.25    MQFilter40    AB=0.311;AC=1;AF=0.50;AN=2;BaseQRankSum=1.392;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2788;MQ=26.04;MQ0=5;MQRankSum=-2.757;QD=12.99;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=E71;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12042743_12043034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321602    GT:AD:DP:GQ:PL    0/1:38,84:122:99:1615,0,682
8    12043039    .    G    A    56.81    MQFilter40;QDFilter2    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=0.878;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.29;MQ0=74;MQRankSum=-0.426;QD=0.42;ReadPosRankSum=0.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524571    GT:AD:DP:GQ:PL    0/1:100,35:135:86.81:87,0,543
8    12043083    rs148370787    G    T    184.79    MQFilter40    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=2.044;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.445;MQ=10.66;MQ0=52;MQRankSum=-0.186;QD=2.34;ReadPosRankSum=0.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524571    GT:AD:DP:GQ:PL    0/1:24,55:79:64.72:215,0,65
8    12044201    rs150400095    A    G    96.10    MQFilter40;QDFilter2    AB=0.298;AC=1;AF=0.50;AN=2;BaseQRankSum=2.676;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.34;MQ0=96;MQRankSum=-0.79;QD=0.77;ReadPosRankSum=-2.064;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533493    GT:AD:DP:GQ:PL    0/1:37,87:125:70.75:126,0,71
8    12044328    rs138175362    T    C    36.12    MQFilter40;QDFilter2    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=136;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=3.69;MQ0=132;MQRankSum=-0.727;QD=0.27;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=S119;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12044209_12044342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM86B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431227    GT:AD:DP:GQ:PL    0/1:43,93:136:14.68:66,0,15
8    12215548    .    A    G    177.32    MQFilter40    AC=2;AF=1.00;AN=2;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.43;MQ0=19;QD=6.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC087203.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399870    GT:AD:DP:GQ:PL    1/1:12,14:26:18.04:210,18,0
8    12216273    rs55946435    T    C    1357.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=36.86;MQ0=0;QD=30.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC087203.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399870    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1390,126,0
8    12216326    .    A    ACT    1594.32    PASS    AC=2;AF=1.00;AN=2;DP=37;FS=0.0;HRun=0;HaplotypeScore=172.6361;IndelType=I;MQ=33.52;MQ0=0;QD=40.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC087203.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399870    GT:AD:DP:GQ:PL    1/1:8,31:37:93.32:1636,93,0
8    12232621    rs2739959    A    G    2808.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.67;MQ0=0;QD=33.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-351I21.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526502    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2841,223,0
8    12236292    rs61013791    C    T    2255.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.61;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-351I21.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526502    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2289,172,0
8    12236718    rs62496734    G    A    2687.75    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.761;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=39.21;MQ0=9;MQRankSum=-0.252;QD=26.35;ReadPosRankSum=-0.146;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC087203.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399870    GT:AD:DP:GQ:PL    1/1:7,95:102:99:2721,160,0
8    12237044    rs2739961    T    C    3334.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=43.71;MQ0=0;QD=33.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC087203.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399870    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3335,274,0
8    12272677    rs62498077    G    C    451.02    MQFilter40    AB=0.295;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=44;Dels=0.0;FS=4.151;HRun=2;HaplotypeScore=0.0;MQ=23.56;MQ0=6;MQRankSum=1.287;QD=10.25;ReadPosRankSum=0.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM66A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433621    GT:AD:DP:GQ:PL    0/1:13,31:44:99:481,0,114
8    12272776    rs62498078    C    T    368.35    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.351;DB;DP=55;Dels=0.0;FS=7.991;HRun=0;HaplotypeScore=5.1984;MQ=27.41;MQ0=15;MQRankSum=2.487;QD=6.7;ReadPosRankSum=0.969;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM66A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433621    GT:AD:DP:GQ:PL    0/1:35,20:55:99:398,0,187
8    12272787    rs62498079    T    C    325.60    MQFilter40    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=1.029;DB;DP=56;Dels=0.0;FS=16.246;HRun=1;HaplotypeScore=4.2406;MQ=26.14;MQ0=14;MQRankSum=0.84;QD=5.81;ReadPosRankSum=0.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM66A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433621    GT:AD:DP:GQ:PL    0/1:33,23:56:99:356,0,267
8    12285161    rs147936121    T    C    1486.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3264;MQ=27.18;MQ0=8;QD=22.52;SNPEFF_AMINO_ACID_CHANGE=E71;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12285024_12285315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393715    GT:AD:DP:GQ:PL    1/1:1,65:66:99:1519,150,0
8    12285364    .    G    T    72.22    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=8.44;MQ0=45;QD=1.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262365    GT:AD:DP:GQ:PL    1/1:17,41:58:12:105,12,0
8    12291492    .    C    T    713.48    MQFilter40    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.501;DP=116;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8188;MQ=23.53;MQ0=4;MQRankSum=-1.164;QD=6.15;ReadPosRankSum=-0.679;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262365    GT:AD:DP:GQ:PL    0/1:73,42:116:99:743,0,1553
8    12291593    rs146321506    C    A    1446.45    MQFilter40    AB=0.317;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.379;DB;DP=230;Dels=0.0;FS=2.195;HRun=0;HaplotypeScore=2.2592;MQ=16.48;MQ0=68;MQRankSum=1.124;QD=6.29;ReadPosRankSum=-1.709;SNPEFF_AMINO_ACID_CHANGE=D43Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12291561_12291623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262365    GT:AD:DP:GQ:PL    0/1:73,157:230:99:1476,0,367
8    12384245    rs146855510    G    T    352.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.22;MQ0=14;QD=12.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357132    GT:AD:DP:GQ:PL    1/1:13,16:29:42.04:385,42,0
8    12384295    .    C    T    234.29    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=9.79;MQ0=65;MQRankSum=0.274;QD=2.79;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357132    GT:AD:DP:GQ:PL    1/1:62,22:84:6.36:266,6,0
8    12423325    rs2681141    C    A    260.10    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.326;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=49.42;MQ0=1;MQRankSum=-0.99;QD=7.03;ReadPosRankSum=-0.856;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357132    GT:AD:DP:GQ:PL    0/1:24,13:37:99:290,0,802
8    12423370    rs4831549    G    A    51.03    QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=0.045;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.941;MQ=41.71;MQ0=4;MQRankSum=-1.22;QD=0.68;ReadPosRankSum=0.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357132    GT:AD:DP:GQ:PL    0/1:64,11:75:81.03:81,0,1762
8    12423373    rs2681142    T    C    145.62    QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=76;Dels=0.0;FS=1.467;HRun=0;HaplotypeScore=8.941;MQ=41.63;MQ0=4;MQRankSum=0.621;QD=1.92;ReadPosRankSum=-1.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357132    GT:AD:DP:GQ:PL    0/1:64,12:76:99:176,0,1751
8    12435332    rs639117    A    G    2004.79    MQFilter40    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.461;DB;DP=186;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0463;MQ=35.35;MQ0=10;MQRankSum=-0.321;QD=10.78;ReadPosRankSum=-0.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068587.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500162    GT:AD:DP:GQ:PL    0/1:97,89:186:99:2035,0,2378
8    12435571    rs588547    C    T    1012.10    HaplotypeScoreFilter13    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.915;DB;DP=250;DS;Dels=0.0;FS=4.877;HRun=0;HaplotypeScore=50.7276;MQ=46.35;MQ0=13;MQRankSum=-1.081;QD=4.05;ReadPosRankSum=-1.062;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC068587.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458954    GT:AD:DP:GQ:PL    0/1:198,51:250:99:1042,0,6287
8    12435580    rs77475506    G    A    931.24    HaplotypeScoreFilter13    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=3.08;DB;DP=250;DS;Dels=0.0;FS=1.954;HRun=4;HaplotypeScore=35.5116;MQ=46.27;MQ0=11;MQRankSum=0.528;QD=3.72;ReadPosRankSum=-0.183;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC068587.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458954    GT:AD:DP:GQ:PL    0/1:192,58:250:99:961,0,5962
8    12435866    rs652118    A    C    3108.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=47.34;MQ0=0;QD=30.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC068587.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458954    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3141,259,0
8    12435889    rs617055    C    A    238.87    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.76;MQ0=0;MQRankSum=1.383;QD=3.92;ReadPosRankSum=-0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC068587.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458954    GT:AD:DP:GQ:PL    0/1:48,13:61:99:269,0,1208
8    12554649    rs626926    C    T    2893.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.19;MQ0=0;QD=32.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E15P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533484    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2927,226,0
8    12554743    rs627342    A    G    910.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E15P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533484    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:944,75,0
8    12583544    rs11782145    C    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526610    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
8    12586261    rs3802268    A    G    76.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526610    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
8    12589179    rs3802269    C    A    527.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398246    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:560,42,0
8    12592956    rs13251315    C    A    1544.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530693    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1578,117,0
8    12593045    rs13272425    A    G    253.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530693    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:286,24,0
8    12598188    rs11775169    T    C    94.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398246    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
8    12598608    rs4831354    C    T    2234.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398246    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2267,178,0
8    12598755    rs7819033    C    T    85.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=17.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398246    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:117,9,0
8    12600622    rs7837242    C    T    1022.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398246    GT:AD:DP:GQ:PL    1/1:0,31:31:78.26:1056,78,0
8    12809667    rs2272624    A    T    294.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=Q18H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12809572_12809867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445495    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:327,24,0
8    12809700    rs2272623    G    A    304.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=A29;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12809572_12809867;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445495    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:338,24,0
8    12848221    rs36056654    T    C    302.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=20.14;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445495    GT:AD:DP:GQ:PL    0/1:5,10:15:99:332,0,155
8    12863700    rs35757493    G    C    514.29    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=1.777;DB;DP=25;Dels=0.0;FS=1.999;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.262;QD=20.57;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445495    GT:AD:DP:GQ:PL    0/1:8,17:25:99:544,0,262
8    12864040    rs71522321    C    G    184.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=15.35;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528335    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,204
8    12870139    rs12156247    G    C    730.95    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=53;Dels=0.0;FS=6.301;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.007;QD=13.79;ReadPosRankSum=-1.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445495    GT:AD:DP:GQ:PL    0/1:28,25:53:99:761,0,986
8    12870160    rs2460338    G    C    1047.56    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.289;DB;DP=66;Dels=0.0;FS=1.262;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.532;QD=15.87;ReadPosRankSum=-0.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445495    GT:AD:DP:GQ:PL    0/1:32,34:66:99:1078,0,979
8    12870186    rs12156420    C    G    1134.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.751;DB;DP=76;Dels=0.0;FS=5.194;HRun=0;HaplotypeScore=0.7887;MQ=59.7;MQ0=0;MQRankSum=-0.281;QD=14.74;ReadPosRankSum=0.497;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_12869522_12870366;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529978    GT:AD:DP:GQ:PL    0/1:38,38:76:99:1165,0,1139
8    12870438    rs2466264    C    G    462.48    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.069;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=15.95;ReadPosRankSum=-0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447063    GT:AD:DP:GQ:PL    0/1:15,14:29:99:492,0,485
8    12878637    rs528255    A    G    2047.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_AMINO_ACID_CHANGE=H150R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12878517_12880024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524591    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2080,174,0
8    12878677    rs622106    T    C    1443.25    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.657;DB;DP=96;Dels=0.0;FS=2.068;HRun=1;HaplotypeScore=2.6482;MQ=59.47;MQ0=0;MQRankSum=1.479;QD=15.03;ReadPosRankSum=0.788;SNPEFF_AMINO_ACID_CHANGE=A163;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12878517_12880024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524591    GT:AD:DP:GQ:PL    0/1:48,47:96:99:1473,0,1621
8    12878807    rs3739310    T    G    2393.54    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.825;DB;DP=172;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7075;MQ=59.06;MQ0=0;MQRankSum=0.518;QD=13.92;ReadPosRankSum=-0.163;SNPEFF_AMINO_ACID_CHANGE=C120G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12878517_12883674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529978    GT:AD:DP:GQ:PL    0/1:87,84:172:99:2424,0,2748
8    12879062    rs503550    T    C    2254.41    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=154;Dels=0.0;FS=0.611;HRun=0;HaplotypeScore=3.5925;MQ=59.43;MQ0=0;MQRankSum=1.004;QD=14.64;ReadPosRankSum=1.071;SNPEFF_AMINO_ACID_CHANGE=L205;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12878517_12883674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529978    GT:AD:DP:GQ:PL    0/1:76,78:154:99:2284,0,2303
8    12879099    rs63744861    G    A    1993.56    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=59.81;MQ0=0;MQRankSum=1.134;QD=16.48;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=G217E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12878517_12883674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529978    GT:AD:DP:GQ:PL    0/1:54,67:121:99:2024,0,1671
8    12879334    rs608909    T    C    1774.15    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.852;DB;DP=149;Dels=0.0;FS=0.608;HRun=0;HaplotypeScore=2.5151;MQ=59.57;MQ0=0;MQRankSum=0.448;QD=11.91;ReadPosRankSum=-0.101;SNPEFF_AMINO_ACID_CHANGE=V295;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12878517_12883674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529978    GT:AD:DP:GQ:PL    0/1:82,67:149:99:1804,0,2635
8    12879539    rs608052    A    G    1484.86    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=0.575;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.18;QD=13.14;ReadPosRankSum=-0.156;SNPEFF_AMINO_ACID_CHANGE=R364G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12878517_12883674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529978    GT:AD:DP:GQ:PL    0/1:57,56:113:99:1515,0,1769
8    12879600    rs498852    C    T    1904.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=31.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529706    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1937,153,0
8    12879694    rs3832585    G    GT    212.22    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;FS=0.0;HRun=4;HaplotypeScore=37.74;IndelType=I;MQ=61.78;MQ0=0;MQRankSum=0.244;QD=17.69;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529706    GT:AD:DP:GQ:PL    0/1:5,7:12:99:251,0,134
8    12879707    rs476023    T    G    138.57    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.4;ReadPosRankSum=-2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529706    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,143
8    12879777    rs475181    C    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135352.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529706    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
8    12943065    rs10888175    T    C    74.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512044    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
8    12943691    rs621554    C    T    164.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=10.97;ReadPosRankSum=2.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521730    GT:AD:DP:GQ:PL    0/1:9,6:15:99:195,0,301
8    12948951    rs609020    A    G    1835.99    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.004;DB;DP=110;Dels=0.0;FS=0.842;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.274;QD=16.69;ReadPosRankSum=0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510250    GT:AD:DP:GQ:PL    0/1:47,63:110:99:1866,0,1419
8    12950110    rs7829535    G    A    255.81    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.003;QD=19.68;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510250    GT:AD:DP:GQ:PL    0/1:4,9:13:99:286,0,125
8    12952174    rs5889417    CA    C    253.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=63.3738;IndelType=D;MQ=59.35;MQ0=0;QD=21.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510250    GT:AD:DP:GQ:PL    1/1:0,12:12:35.96:296,36,0
8    12952230    rs658948    C    T    387.48    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.828;DB;DP=23;Dels=0.0;FS=4.771;HRun=5;HaplotypeScore=0.6651;MQ=59.47;MQ0=0;MQRankSum=0.783;QD=16.85;ReadPosRankSum=1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510250    GT:AD:DP:GQ:PL    0/1:7,16:23:99:417,0,196
8    12957475    rs532841    C    T    660.20    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=59.53;MQ0=0;MQRankSum=-1.479;QD=13.47;ReadPosRankSum=-2.017;SNPEFF_AMINO_ACID_CHANGE=V280M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12956856_12958279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000520226    GT:AD:DP:GQ:PL    0/1:26,23:49:99:690,0,791
8    12958025    rs3739298    C    A    635.04    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.532;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.397;QD=14.11;ReadPosRankSum=2.691;SNPEFF_AMINO_ACID_CHANGE=A170;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_12956856_12958279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358919    GT:AD:DP:GQ:PL    0/1:23,22:45:99:665,0,632
8    12960281    rs2280335    T    C    1422.56    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.032;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=-0.352;QD=12.93;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    0/1:57,53:110:99:1453,0,1671
8    12968049    rs62489161    A    G    123.44    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=17.63;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    0/1:1,6:7:20.52:153,0,21
8    12973078    rs34462909    T    C    188.53    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.492;DB;DP=30;Dels=0.0;FS=2.637;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.383;QD=6.28;ReadPosRankSum=1.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    0/1:22,8:30:99:219,0,684
8    12990518    rs13275331    T    A    120.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.36;MQ0=0;QD=17.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:154,15,0
8    13258936    rs289583    T    A    336.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=24.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    1/1:0,14:14:27.09:369,27,0
8    13356424    rs3736135    G    T    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.61;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517333    GT:AD:DP:GQ:PL    0/1:2,3:5:57.10:108,0,57
8    13356457    rs117937358    A    T    156    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=19.5;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517333    GT:AD:DP:GQ:PL    0/1:2,6:8:60.34:186,0,60
8    13356460    rs117378186    C    T    189.05    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=23.63;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517333    GT:AD:DP:GQ:PL    0/1:2,6:8:55.88:219,0,56
8    13356802    rs3816747    G    A    2078.95    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.366;DB;DP=148;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=-1.006;QD=14.05;ReadPosRankSum=0.61;SNPEFF_AMINO_ACID_CHANGE=T260I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_13356558_13357705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    0/1:76,72:148:99:2109,0,2423
8    13356818    rs11203494    T    C    1532.96    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=149;Dels=0.0;FS=2.883;HRun=0;HaplotypeScore=0.0;MQ=58.94;MQ0=0;MQRankSum=-0.83;QD=10.29;ReadPosRankSum=0.606;SNPEFF_AMINO_ACID_CHANGE=N255D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_13356558_13357705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    0/1:75,74:149:99:1563,0,2332
8    13356819    rs11203495    T    G    1495.57    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.625;DB;DP=149;Dels=0.0;FS=2.065;HRun=0;HaplotypeScore=0.9469;MQ=58.94;MQ0=0;MQRankSum=0.651;QD=10.04;ReadPosRankSum=0.556;SNPEFF_AMINO_ACID_CHANGE=Q254H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_13356558_13357705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    0/1:75,74:149:99:1526,0,2348
8    13357502    rs34575560    G    A    1474.47    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.375;DB;DP=94;Dels=0.0;FS=7.723;HRun=1;HaplotypeScore=0.7887;MQ=59.75;MQ0=0;MQRankSum=0.203;QD=15.69;ReadPosRankSum=-0.867;SNPEFF_AMINO_ACID_CHANGE=R27C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_13356558_13357705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276297    GT:AD:DP:GQ:PL    0/1:45,48:94:99:1504,0,1531
8    13357587    rs1383942    G    A    852.06    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.309;DB;DP=63;Dels=0.0;FS=3.928;HRun=0;HaplotypeScore=0.9967;MQ=59.63;MQ0=0;MQRankSum=-0.736;QD=13.52;ReadPosRankSum=1.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517333    GT:AD:DP:GQ:PL    0/1:32,31:63:99:882,0,959
8    13424385    rs10095899    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.38;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_13424352_13425796;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297324    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    13424583    rs13273355    C    T    533.93    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.865;DB;DP=41;Dels=0.0;FS=1.283;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.848;QD=13.02;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=S28F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_13424352_13425796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297324    GT:AD:DP:GQ:PL    0/1:20,21:41:99:564,0,544
8    13425353    rs11203497    T    A    2384.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=L285M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_13424352_13425796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297324    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2417,178,0
8    13880302    rs58578149    A    G    298.61    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=14.22;ReadPosRankSum=-0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-510I21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534576    GT:AD:DP:GQ:PL    0/1:11,10:21:99:329,0,386
8    13880709    rs7005250    C    A    1547.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-510I21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534576    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1581,114,0
8    13965581    rs72474487    AT    A    478.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=3;HaplotypeScore=40.5162;IndelType=D;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:521,42,0
8    14094993    rs71541654    A    AAAC    7434.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.796;DB;DP=156;FS=0.0;HRun=0;HaplotypeScore=470.1473;IndelType=I;MQ=61.1;MQ0=0;MQRankSum=1.667;QD=47.66;ReadPosRankSum=-0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:25,121:156:99:7434,265,0
8    14095199    rs13269000    T    C    5603.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.26;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:0,171:171:99:5604,475,0
8    14095250    rs140570215    A    AT    3118.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;FS=0.0;HRun=1;HaplotypeScore=346.864;IndelType=I;MQ=60.97;MQ0=0;QD=41.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:3,73:76:99:3161,223,0
8    14167113    rs12156020    C    T    1561.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.25;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1595,114,0
8    14167258    rs12156331    T    G    815.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:0,22:22:66.19:849,66,0
8    14167289    rs11203597    C    G    509.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.33;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:542,42,0
8    14167382    rs17095085    G    C    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
8    15095085    rs4831331    C    G    137.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382080    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:171,15,0
8    15508200    rs1035972    T    C    1302.65    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=103;Dels=0.0;FS=1.625;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.921;QD=12.65;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382020    GT:AD:DP:GQ:PL    0/1:55,48:103:99:1333,0,1650
8    15508431    rs1975058    G    A    338.69    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.63;MQ0=0;MQRankSum=-0.163;QD=19.92;ReadPosRankSum=1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382020    GT:AD:DP:GQ:PL    0/1:6,11:17:99:369,0,203
8    15531400    rs142819518    G    A    388.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.436;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.359;QD=14.96;ReadPosRankSum=0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503191    GT:AD:DP:GQ:PL    0/1:13,13:26:99:419,0,456
8    15606182    rs7820648    G    A    3030.11    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.478;DB;DP=200;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9979;MQ=59.77;MQ0=0;MQRankSum=0.631;QD=15.15;ReadPosRankSum=-0.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382020    GT:AD:DP:GQ:PL    0/1:101,99:200:99:3060,0,3333
8    15615179    rs144349074    CCT    C    163.66    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=57.2253;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.69;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382020    GT:AD:DP:GQ:PL    0/1:9,5:14:99:203,0,502
8    15978063    rs4338104    C    T    3497.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=51.85;MQ0=0;QD=29.64;SNPEFF_AMINO_ACID_CHANGE=R362;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_15977927_15978115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262101    GT:AD:DP:GQ:PL    1/1:9,109:118:99:3497,283,0
8    15978189    rs1993978    C    G    448.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.83;MQ0=0;QD=17.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522672    GT:AD:DP:GQ:PL    1/1:0,25:25:39.10:481,39,0
8    16007691    rs56287808    G    A    81.23    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=6.25;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262101    GT:AD:DP:GQ:PL    0/1:8,5:13:99:111,0,292
8    16021468    rs351572    G    A    158.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262101    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
8    16850416    rs2640901    A    G    483.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381981    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:516,39,0
8    16850498    rs1721100    C    G    1236.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000180166    GT:AD:DP:GQ:PL    1/1:0,36:36:93.31:1270,93,0
8    16850878    rs6991982    T    G    969.99    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=65;Dels=0.0;FS=10.793;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=14.92;ReadPosRankSum=0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000180166    GT:AD:DP:GQ:PL    0/1:34,31:65:99:1000,0,974
8    16851041    rs1721099    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000180166    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
8    16859398    rs10448135    C    G    163.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_AMINO_ACID_CHANGE=A48;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_16859256_16859690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000180166    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
8    16927250    rs17686794    A    C    1445.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=59.49;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318063    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1478,114,0
8    16935234    rs10098337    G    C    974.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318063    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:1007,72,0
8    16942837    rs2285264    C    T    1059.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318063    GT:AD:DP:GQ:PL    1/1:0,32:32:78.26:1093,78,0
8    16942849    rs2285265    C    T    873.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318063    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:907,69,0
8    17055248    rs3752613    C    A    966.22    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=59.68;MQ0=0;MQRankSum=0.377;QD=13.61;ReadPosRankSum=0.864;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262096    GT:AD:DP:GQ:PL    0/1:40,31:71:99:996,0,1363
8    17063335    rs2904674    A    G    3693.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=39.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522184    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3693,268,0
8    17068013    rs1548350    T    G    1487.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517334    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1521,117,0
8    17072623    rs2959612    T    C    542.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517334    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:575,45,0
8    17092164    rs2959606    G    T    1350.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522062    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1383,99,0
8    17137687    rs3213601    G    A    2148.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS37A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324849    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2182,163,0
8    17230644    rs7388581    G    C    937.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=P44A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17230627_17230749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000180173    GT:AD:DP:GQ:PL    1/1:0,30:30:78.21:970,78,0
8    17270763    rs2073694    G    C    36.20    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=7.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000180173    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,103
8    17270764    rs76718364    C    A    69.96    SnpCluster    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.358;QD=13.99;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000180173    GT:AD:DP:GQ:PL    0/1:2,3:5:64.98:100,0,65
8    17270770    rs75437306    T    C    76.73    SnpCluster    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.358;QD=15.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000180173    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:107,0,67
8    17270787    rs67972978    A    G    133.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=26.62;SNPEFF_AMINO_ACID_CHANGE=R5;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17270778_17270836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000180173    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
8    17396415    rs13259978    G    A    891.81    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.015;DB;DP=60;Dels=0.0;FS=3.656;HRun=1;HaplotypeScore=0.734;MQ=59.62;MQ0=0;MQRankSum=-0.23;QD=14.86;ReadPosRankSum=-1.667;SNPEFF_AMINO_ACID_CHANGE=D28N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17396286_17396431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000004531    GT:AD:DP:GQ:PL    0/1:28,32:60:99:922,0,771
8    17401364    rs145707299    CCTT    C    265.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=28.6605;IndelType=D;MQ=53.03;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004531    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:307,18,0
8    17401878    rs2517252    G    A    1061.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004531    GT:AD:DP:GQ:PL    1/1:0,29:29:81.27:1094,81,0
8    17406183    rs737039    A    G    2643.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.958;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.18;MQ0=0;MQRankSum=0.917;QD=31.1;ReadPosRankSum=-1.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004531    GT:AD:DP:GQ:PL    1/1:1,84:85:99:2677,178,0
8    17406367    rs11373918    GT    G    811.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.358;DB;DP=41;FS=0.0;HRun=11;HaplotypeScore=113.4957;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=-0.234;QD=19.8;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004531    GT:AD:DP:GQ:PL    1/1:5,36:41:78.86:854,79,0
8    17421279    rs2588173    T    C    1172.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004531    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1205,108,0
8    17446697    rs2720560    A    G    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251630    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
8    17446894    rs34147348    CA    C    1488.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;DB;DP=90;FS=0.0;HRun=14;HaplotypeScore=313.7669;IndelType=D;MQ=59.79;MQ0=0;MQRankSum=0.338;QD=16.54;ReadPosRankSum=1.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251630    GT:AD:DP:GQ:PL    1/1:5,78:90:99:1531,209,0
8    17478544    .    T    G    483.69    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.835;DP=23;Dels=0.0;FS=5.166;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.637;QD=21.03;ReadPosRankSum=1.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251630    GT:AD:DP:GQ:PL    0/1:7,16:23:99:514,0,207
8    17485789    rs2427718    T    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251630    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    17485833    rs2237838    A    G    117.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251630    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
8    17486282    rs2517221    T    C    466.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=24.58;SNPEFF_AMINO_ACID_CHANGE=Y264;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17485996_17486289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251630    GT:AD:DP:GQ:PL    1/1:0,19:19:42.09:500,42,0
8    17500223    rs4705    T    C    1615    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.229;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.556;QD=30.47;ReadPosRankSum=1.536;SNPEFF_AMINO_ACID_CHANGE=F347;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17500122_17500616;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFRL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251630    GT:AD:DP:GQ:PL    1/1:1,52:53:96.09:1648,96,0
8    17503270    rs1043885    G    C    41.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518713    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
8    17503431    rs1043883    G    C    244.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518713    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
8    17511925    rs2285300    C    A    32.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517818    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
8    17532619    rs2269699    C    T    240.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522149    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:273,21,0
8    17533568    rs2301541    A    T    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262102    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
8    17533633    rs2301542    A    G    341.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262102    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:375,33,0
8    17541999    rs2979792    T    C    1692.93    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.085;DB;DP=148;Dels=0.0;FS=1.409;HRun=1;HaplotypeScore=1.7172;MQ=60.0;MQ0=0;MQRankSum=-0.213;QD=11.44;ReadPosRankSum=-0.601;SNPEFF_AMINO_ACID_CHANGE=T139;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17541837_17542051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381861    GT:AD:DP:GQ:PL    0/1:78,70:148:99:1723,0,2299
8    17542215    rs6421404    C    T    124.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262102    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
8    17579135    rs6982255    C    T    144    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=13.09;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381862    GT:AD:DP:GQ:PL    0/1:6,5:11:99:174,0,220
8    17581106    rs73206217    T    C    224.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.194;QD=9.35;ReadPosRankSum=-1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381862    GT:AD:DP:GQ:PL    0/1:16,8:24:99:254,0,589
8    17611074    rs6586642    C    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518755    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
8    17611886    rs2979788    G    A    3648.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=P477;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17611226_17613470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262102    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3648,268,0
8    17612456    rs11203910    C    T    3276.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9832;MQ=59.79;MQ0=0;QD=30.34;SNPEFF_AMINO_ACID_CHANGE=K287;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17611226_17613470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262102    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3276,271,0
8    17612639    rs209568    T    C    979.67    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=56;Dels=0.0;FS=2.302;HRun=0;HaplotypeScore=0.9159;MQ=59.59;MQ0=0;MQRankSum=1.652;QD=17.49;ReadPosRankSum=-2.223;SNPEFF_AMINO_ACID_CHANGE=E226;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17611226_17613470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262102    GT:AD:DP:GQ:PL    0/1:22,34:56:99:1010,0,716
8    17612875    rs3739407    A    G    2101.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=C148R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17611226_17613470;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262102    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2134,163,0
8    17725863    rs2653416    C    A    83.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221204    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
8    17726019    rs10112643    A    G    2030.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.32;MQ0=0;QD=29.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221204    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2064,171,0
8    17731409    rs2653407    G    A    127.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=25.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221204    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
8    17732084    rs56193532    G    C    66.01    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=1.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221204    GT:AD:DP:GQ:PL    1/1:0,43:43:11.96:98,12,0
8    17732085    rs2653404    C    A    33.98    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;QD=0.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221204    GT:AD:DP:GQ:PL    1/1:0,41:41:8.95:66,9,0
8    17739538    rs3739406    T    C    1620.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=I42V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17739508_17739688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521427    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1653,123,0
8    17739843    rs3739404    C    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518769    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
8    17742929    rs2073562    A    G    357.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518769    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:391,30,0
8    17743020    rs484373    G    A    1579.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_AMINO_ACID_CHANGE=T15I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17743001_17743080;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221204    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1612,117,0
8    17743256    rs369898    G    C    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221204    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    17796382    rs41364448    A    G    4324.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.56;MQ0=0;QD=29.22;SNPEFF_AMINO_ACID_CHANGE=N159S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17796249_17796518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325083    GT:AD:DP:GQ:PL    1/1:0,148:148:99:4325,352,0
8    17796383    rs114261839    C    T    4225.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.56;MQ0=0;QD=28.55;SNPEFF_AMINO_ACID_CHANGE=N159;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17796249_17796518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325083    GT:AD:DP:GQ:PL    1/1:0,148:148:99:4226,349,0
8    17796761    rs12546695    T    A    30.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518936    GT:AD:DP:GQ:PL    1/1:0,2:2:6:62,6,0
8    17797055    rs12546237    A    G    76.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518936    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
8    17797409    rs2285303    A    G    1255.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518936    GT:AD:DP:GQ:PL    1/1:0,32:32:96.31:1288,96,0
8    17804665    rs28655174    G    A    2770.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325083    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2804,211,0
8    17814680    rs11777618    G    C    2167.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518537    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2200,160,0
8    17814915    rs208753    A    G    5508.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=34.64;SNPEFF_AMINO_ACID_CHANGE=M597V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17814773_17814930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325083    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5508,427,0
8    17819572    rs3780103    C    T    3006.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=P784;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17819543_17819683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325083    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3040,229,0
8    17819761    rs208060    A    G    1551.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517730    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1584,126,0
8    17819812    rs11203929    T    C    806.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517730    GT:AD:DP:GQ:PL    1/1:0,25:25:72.19:839,72,0
8    17823285    rs208054    G    C    95.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517836    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:128,9,0
8    17827260    rs72589229    A    AC    3153.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.0;HRun=1;HaplotypeScore=167.5614;IndelType=I;MQ=60.8;MQ0=0;QD=43.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518762    GT:AD:DP:GQ:PL    1/1:0,72:73:99:3196,217,0
8    17829756    rs34990698    C    CAA    1368.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=60.8744;IndelType=I;MQ=62.22;MQ0=0;QD=57.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325083    GT:AD:DP:GQ:PL    1/1:0,22:24:72.24:1410,72,0
8    17850766    rs415321    C    G    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325083    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
8    17851248    rs429633    C    A    414    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325083    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:447,36,0
8    17868029    rs2467556    C    A    848.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521338    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:882,66,0
8    17868245    rs2467555    C    A    1022.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521338    GT:AD:DP:GQ:PL    1/1:0,30:30:84.25:1055,84,0
8    17868521    rs1978054    T    C    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521338    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
8    17871598    rs13266287    T    A    667.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.866;MQ=55.21;MQ0=0;QD=26.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521338    GT:AD:DP:GQ:PL    1/1:0,25:25:57.17:701,57,0
8    17871619    rs28551649    A    C    431.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.073;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.25;MQ0=0;MQRankSum=-1.734;QD=20.56;ReadPosRankSum=1.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521338    GT:AD:DP:GQ:PL    1/1:1,20:21:5.82:463,6,0
8    17871902    rs146359431    T    TA    163.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=4;HaplotypeScore=14.8369;IndelType=I;MQ=56.82;MQ0=0;QD=27.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521338    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:205,15,0
8    17883296    rs523171    G    A    429.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518877    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:463,33,0
8    17883400    rs7828234    G    A    161.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518877    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:195,15,0
8    17884971    rs372876    G    A    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518877    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
8    17885091    rs3213605    T    C    580.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518877    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:613,45,0
8    17891178    rs6586680    C    T    442.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325126    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:476,36,0
8    17916224    rs420610    A    C    233.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517409    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:267,21,0
8    17916553    rs7465164    C    T    152.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517409    GT:AD:DP:GQ:PL    1/1:1,5:6:15.02:185,15,0
8    17916598    rs33985304    CT    C    150.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=6;HaplotypeScore=22.5955;IndelType=D;MQ=63.51;MQ0=0;QD=25.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517409    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:193,18,0
8    17918934    rs10103355    A    G    1889.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_AMINO_ACID_CHANGE=V156A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_17918886_17918967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417108    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1922,138,0
8    17920077    rs12541567    T    A    311.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518087    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:345,27,0
8    17920807    rs7824644    A    G    3619.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.38;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518087    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3619,268,0
8    17920820    rs7824650    A    T    2897.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=36.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518087    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2930,229,0
8    17921921    rs2073574    T    C    574.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518087    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:607,45,0
8    18257795    rs1041983    C    T    2457    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=Y94;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_18257508_18258728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286479    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2490,190,0
8    18258103    rs1799930    G    A    3183.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3617;MQ=59.57;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=R197Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_18257508_18258728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286479    GT:AD:DP:GQ:PL    1/1:0,96:97:99:3216,238,0
8    18258316    rs1208    G    A    2219.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=R138K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_18257847_18258503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000520116    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2253,175,0
8    18393159    rs66649408    C    CT    694.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.348;DB;DP=29;FS=0.0;HRun=11;HaplotypeScore=122.7875;IndelType=I;MQ=57.96;MQ0=0;MQRankSum=0.835;QD=23.93;ReadPosRankSum=-0.064;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521878    GT:AD:DP:GQ:PL    1/1:2,26:29:73.26:736,73,0
8    18393656    rs3739394    T    C    129.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
8    18413875    rs2260920    A    G    1603.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6202;MQ=59.07;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1636,126,0
8    18429869    rs923391    G    A    559.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:592,45,0
8    18432578    rs2248559    C    G    467.65    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.375;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.126;QD=21.26;ReadPosRankSum=-0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    0/1:8,14:22:99:498,0,265
8    18457735    rs2634459    G    A    111.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=12.42;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    0/1:5,4:9:99:142,0,138
8    18457957    rs2932001    A    G    1315.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1348,126,0
8    18458015    rs77583765    C    G    290.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=16.14;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    0/1:8,10:18:99:320,0,270
8    18512971    rs9325838    A    G    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
8    18513220    rs10087662    C    A    580.13    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.665;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=14.15;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    0/1:18,23:41:99:610,0,451
8    18590892    rs2410586    T    C    1067.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    1/1:0,30:30:84.23:1101,84,0
8    18590932    rs4621846    C    G    2082.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2115,159,0
8    18623128    rs17127176    A    G    90.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=6.97;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    0/1:8,4:13:99:121,0,292
8    18656888    rs3214999    AG    A    98.57    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=2.985;DB;DP=24;FS=0.0;HRun=1;HaplotypeScore=54.5092;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=4.11;ReadPosRankSum=-0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518303    GT:AD:DP:GQ:PL    0/1:19,5:24:99:138,0,758
8    18658750    rs1386692    A    G    874.15    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.094;DB;DP=51;Dels=0.0;FS=3.466;HRun=0;HaplotypeScore=0.734;MQ=59.63;MQ0=0;MQRankSum=-0.458;QD=17.14;ReadPosRankSum=-0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519633    GT:AD:DP:GQ:PL    0/1:19,32:51:99:904,0,515
8    18658929    rs1386691    C    A    555.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519633    GT:AD:DP:GQ:PL    1/1:1,17:18:45.13:589,45,0
8    18658950    rs11774165    T    G    90.56    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.466;QD=6.97;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519633    GT:AD:DP:GQ:PL    0/1:9,4:13:99:121,0,329
8    18659019    rs1386690    C    T    158.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519633    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
8    18661932    rs79603013    TAA    T    103.87    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DB;DP=15;FS=0.0;HRun=12;HaplotypeScore=82.3611;IndelType=D;MQ=59.18;MQ0=0;MQRankSum=2.517;QD=6.92;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    0/1:4,6:15:52.54:143,0,53
8    18666210    rs2638653    G    A    902.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286485    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:935,72,0
8    18728941    rs6993670    A    G    133.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327040    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:166,15,0
8    18729459    rs13273954    T    C    1294.32    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.279;DB;DP=84;Dels=0.0;FS=1.039;HRun=0;HaplotypeScore=1.5781;MQ=59.73;MQ0=0;MQRankSum=0.685;QD=15.41;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=E240;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_18729136_18730243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523619    GT:AD:DP:GQ:PL    0/1:40,44:84:99:1324,0,1317
8    18729496    rs13263453    G    A    965.65    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.575;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=16.09;ReadPosRankSum=0.297;SNPEFF_AMINO_ACID_CHANGE=P228L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_18729136_18730243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523619    GT:AD:DP:GQ:PL    0/1:27,33:60:99:996,0,906
8    18793371    rs17384265    A    C    349.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.88;ReadPosRankSum=0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521475    GT:AD:DP:GQ:PL    0/1:11,11:22:99:379,0,388
8    18793697    rs10092681    T    A    2248.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327040    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2281,193,0
8    19192535    rs3988307    C    T    125.26    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=20.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265807    GT:AD:DP:GQ:PL    0/1:1,5:6:19.76:155,0,20
8    19221700    rs34608771    G    A    907.43    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=85;Dels=0.0;FS=4.417;HRun=3;HaplotypeScore=3.1456;MQ=60.0;MQ0=0;MQRankSum=0.173;QD=10.68;ReadPosRankSum=1.929;SNPEFF_AMINO_ACID_CHANGE=S230N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_19221583_19221793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518040    GT:AD:DP:GQ:PL    0/1:47,37:85:99:937,0,1365
8    19230957    .    A    G    118.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.75;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265807    GT:AD:DP:GQ:PL    1/1:2,4:6:12.03:151,12,0
8    19231093    rs150534166    C    T    435.81    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=41;Dels=0.0;FS=5.301;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=0.227;QD=10.63;ReadPosRankSum=-0.976;SNPEFF_AMINO_ACID_CHANGE=R279W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_19231041_19231171;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518040    GT:AD:DP:GQ:PL    0/1:25,16:41:99:466,0,736
8    19252189    rs1344254    G    A    351.51    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.847;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.036;QD=16.74;ReadPosRankSum=-1.34;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265807    GT:AD:DP:GQ:PL    0/1:8,13:21:99:382,0,279
8    19277735    rs7016592    A    G    415.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518542    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:448,36,0
8    19277817    rs6999786    G    A    1389.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518542    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1422,108,0
8    19297583    rs13278459    A    G    203.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311540    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:236,18,0
8    19316086    rs12155539    G    A    2069.72    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.525;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9325;MQ=59.45;MQ0=0;MQRankSum=0.572;QD=16.56;ReadPosRankSum=0.387;SNPEFF_AMINO_ACID_CHANGE=H234;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_19315937_19316153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311540    GT:AD:DP:GQ:PL    0/1:59,65:125:99:2100,0,1732
8    19362768    rs7017776    C    T    1460.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_AMINO_ACID_CHANGE=S193N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_19362712_19363641;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311540    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1493,108,0
8    19363425    rs6984644    C    T    257.83    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=18.42;ReadPosRankSum=0.533;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_19362712_19363641;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332246    GT:AD:DP:GQ:PL    0/1:5,9:14:99:288,0,152
8    19456473    rs4244454    C    T    1872.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311540    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1905,144,0
8    19456538    rs35101845    G    A    453.92    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.557;DB;DP=40;Dels=0.0;FS=1.26;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.639;QD=11.35;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311540    GT:AD:DP:GQ:PL    0/1:22,18:40:99:484,0,767
8    19680635    rs4392917    G    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518424    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    19680736    rs12547934    T    C    919.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518424    GT:AD:DP:GQ:PL    1/1:0,24:24:72.21:953,72,0
8    19680979    rs4464983    C    T    974.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518424    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1007,75,0
8    19681647    rs2410612    G    A    390.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518424    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:424,33,0
8    19682545    rs3816246    A    G    854.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521758    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:887,69,0
8    19682592    rs7018076    A    G    446.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521758    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:480,36,0
8    19689633    rs4434638    T    C    596.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523143    GT:AD:DP:GQ:PL    1/1:0,21:21:45.15:629,45,0
8    20004192    rs2015202    A    G    56.39    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-0.727;QD=14.1;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519171    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:86,0,29
8    20005300    rs1018079    T    C    126.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=58.33;MQ0=0;MQRankSum=0.71;QD=9.06;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    0/1:8,6:14:99:157,0,255
8    20005716    rs903997    G    C    31.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.39;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    0/1:3,2:5:61.96:62,0,111
8    20022694    rs3779670    G    A    680.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:713,54,0
8    20028464    rs11989477    G    A    251.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522513    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
8    20028830    rs17222134    T    C    1102.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,31:31:84.26:1135,84,0
8    20035809    rs1532446    G    A    132.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
8    20036018    rs4922135    G    GAA    773.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=11;HaplotypeScore=148.7667;IndelType=I;MQ=57.62;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:2,19:23:62.17:816,62,0
8    20036043    rs1908809    C    A    517.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.82;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:551,42,0
8    20036095    rs2279708    G    A    321.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
8    20036521    rs1390937    A    G    316.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:349,27,0
8    20036713    rs1390938    A    G    965.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=29.27;SNPEFF_AMINO_ACID_CHANGE=I136T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_20036632_20036995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,33:33:75.24:999,75,0
8    20037017    rs2270638    T    C    1567.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1601,126,0
8    20037193    rs57312342    A    G    133.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,6:6:14.99:167,15,0
8    20038060    rs67315468    G    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    20038139    rs67679930    T    C    160.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
8    20038466    rs2270641    T    G    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.96;MQ0=0;QD=8.28;SNPEFF_AMINO_ACID_CHANGE=T4P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_20038352_20038598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265808    GT:AD:DP:GQ:PL    1/1:0,10:11:9.03:123,9,0
8    20054928    rs116941637    G    A    150.31    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.47;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=R4Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_20054878_20055053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276390    GT:AD:DP:GQ:PL    0/1:2,5:7:26.71:180,0,27
8    20067734    rs73214065    A    G    107.10    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.55;QD=15.3;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276390    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,102
8    20068163    rs7460146    T    G    2663.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276390    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2696,205,0
8    20068191    rs79256811    G    A    1040.42    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.831;DB;DP=60;Dels=0.0;FS=1.903;HRun=4;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.731;QD=17.34;ReadPosRankSum=-1.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276390    GT:AD:DP:GQ:PL    0/1:25,35:60:99:1070,0,776
8    20068619    rs9325865    A    G    590.19    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.613;DB;DP=35;Dels=0.0;FS=3.399;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.308;QD=16.86;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276390    GT:AD:DP:GQ:PL    0/1:16,19:35:99:620,0,513
8    20068903    rs111468230    C    T    78.86    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=20;Dels=0.0;FS=3.493;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.087;QD=3.94;ReadPosRankSum=-1.658;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523478    GT:AD:DP:GQ:PL    0/1:15,5:20:99:109,0,434
8    20069273    .    A    AAGTT    617.84    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.416;DP=33;FS=1.84;HRun=0;HaplotypeScore=124.9607;IndelType=I;MQ=59.3;MQ0=0;MQRankSum=0.748;QD=18.72;ReadPosRankSum=1.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523478    GT:AD:DP:GQ:PL    0/1:24,9:33:99:657,0,1339
8    20072192    rs62498257    A    G    107.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=15.35;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523478    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,106
8    20077915    rs141302257    TG    T    788.06    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=4.416;DB;DP=47;FS=0.0;HRun=1;HaplotypeScore=137.4013;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.11;QD=16.77;ReadPosRankSum=-0.176;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523482    GT:AD:DP:GQ:PL    0/1:23,24:47:99:827,0,960
8    20107143    rs904003    A    G    359.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334294    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:393,30,0
8    20107601    rs723874    G    C    712.21    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.012;DB;DP=47;Dels=0.0;FS=3.153;HRun=1;HaplotypeScore=1.8318;MQ=60.0;MQ0=0;MQRankSum=-0.759;QD=15.15;ReadPosRankSum=0.165;SNPEFF_AMINO_ACID_CHANGE=L475V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_20103676_20107874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265801    GT:AD:DP:GQ:PL    0/1:23,24:47:99:742,0,741
8    20110219    rs2645385    G    A    344.30    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=4.027;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=24.59;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265801    GT:AD:DP:GQ:PL    0/1:3,11:14:45.63:374,0,46
8    20110641    rs2645386    C    T    352.69    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=37;Dels=0.0;FS=1.332;HRun=1;HaplotypeScore=1.7323;MQ=58.11;MQ0=0;MQRankSum=-0.545;QD=9.53;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=E267;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_20110293_20111096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265801    GT:AD:DP:GQ:PL    0/1:21,15:37:99:383,0,666
8    21824547    rs4872191    A    G    1336.94    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.131;DB;DP=89;Dels=0.0;FS=3.871;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.096;QD=15.02;ReadPosRankSum=0.915;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520754    GT:AD:DP:GQ:PL    0/1:43,46:89:99:1367,0,1461
8    21827640    .    G    GT    2621.13    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-9.137;DP=249;DS;FS=0.0;HRun=9;HaplotypeScore=638.8618;IndelType=I;MQ=59.89;MQ0=0;MQRankSum=1.078;QD=10.53;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519769    GT:AD:DP:GQ:PL    0/1:145,104:249:99:2660,0,2663
8    21837994    rs28583947    C    G    43.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.62;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518017    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
8    21839020    rs2306642    T    C    120.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252512    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:153,12,0
8    21839093    rs2306643    T    G    154.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.426;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=12.88;ReadPosRankSum=0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252512    GT:AD:DP:GQ:PL    0/1:6,6:12:99:185,0,209
8    21845428    rs2306645    T    C    740.06    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.6;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=2.727;QD=16.45;ReadPosRankSum=0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252512    GT:AD:DP:GQ:PL    0/1:17,28:45:99:770,0,527
8    21846586    rs2306646    G    C    1399.75    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.173;DB;DP=104;Dels=0.0;FS=9.83;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=13.46;ReadPosRankSum=-1.751;SNPEFF_AMINO_ACID_CHANGE=L620;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21846514_21846594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252512    GT:AD:DP:GQ:PL    0/1:51,53:104:99:1430,0,1582
8    21847855    rs56062629    G    C    2026.87    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=6.568;DB;DP=162;Dels=0.0;FS=6.302;HRun=1;HaplotypeScore=0.9983;MQ=59.72;MQ0=0;MQRankSum=-0.057;QD=12.51;ReadPosRankSum=0.776;SNPEFF_AMINO_ACID_CHANGE=G623;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21847855_21847918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252512    GT:AD:DP:GQ:PL    0/1:91,71:162:99:2057,0,2511
8    21861663    rs10866837    G    C    238.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.193;QD=17.04;ReadPosRankSum=0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522015    GT:AD:DP:GQ:PL    0/1:6,8:14:99:269,0,214
8    21862430    rs71544849    TA    T    40.14    QDFilter2    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=47;FS=0.0;HRun=18;HaplotypeScore=458.7575;IndelType=D;MQ=41.49;MQ0=0;MQRankSum=-1.431;QD=0.85;ReadPosRankSum=-0.084;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522015    GT:AD:DP:GQ:PL    0/1:30,11:47:79.17:79,0,330
8    21862455    .    T    A    30.04    HaplotypeScoreFilter13;QDFilter2    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.711;DP=70;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=34.5817;MQ=45.42;MQ0=0;MQRankSum=-4.026;QD=0.43;ReadPosRankSum=3.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522015    GT:AD:DP:GQ:PL    0/1:44,25:70:60.03:60,0,640
8    21862551    rs1058486    A    G    1971.51    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=165;Dels=0.0;FS=2.735;HRun=0;HaplotypeScore=0.9469;MQ=54.48;MQ0=0;MQRankSum=-0.065;QD=11.95;ReadPosRankSum=0.623;SNPEFF_AMINO_ACID_CHANGE=S1072;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21862506_21864096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252512    GT:AD:DP:GQ:PL    0/1:88,77:165:99:2002,0,2376
8    21890581    rs1947985    T    C    1117.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289820    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1150,84,0
8    21890589    rs1947986    G    A    435.15    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=4.127;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=12.43;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289820    GT:AD:DP:GQ:PL    0/1:19,15:35:99:465,0,513
8    21891939    rs10089142    G    A    1793.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.6;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520125    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1826,141,0
8    21891968    rs4871915    C    G    2475.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520125    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2509,184,0
8    21895017    rs62492154    G    T    171.01    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.135;QD=12.22;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289820    GT:AD:DP:GQ:PL    0/1:5,9:14:99:201,0,145
8    21895070    rs73223780    G    A    363.57    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.661;DB;DP=24;Dels=0.0;FS=9.368;HRun=0;HaplotypeScore=1.2434;MQ=57.05;MQ0=0;MQRankSum=0.661;QD=15.15;ReadPosRankSum=-2.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289820    GT:AD:DP:GQ:PL    0/1:9,15:24:99:394,0,275
8    21895146    rs11992609    A    G    259.24    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.288;DB;DP=26;Dels=0.0;FS=7.209;HRun=1;HaplotypeScore=0.0;MQ=57.29;MQ0=0;MQRankSum=0.377;QD=9.97;ReadPosRankSum=1.563;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289820    GT:AD:DP:GQ:PL    0/1:17,9:26:99:289,0,560
8    21904212    rs1078363    T    C    175.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359441    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:208,18,0
8    21924743    rs11135821    G    A    204.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519959    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
8    21924778    rs11135822    T    G    133.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519959    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
8    21924944    rs11135823    A    G    257.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519959    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:291,27,0
8    21925214    rs6997244    C    G    843.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=27.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519959    GT:AD:DP:GQ:PL    1/1:0,31:31:69.21:877,69,0
8    21925343    rs4871929    A    G    124.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519959    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
8    21927137    rs12680100    G    A    208.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519333    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
8    21927211    rs12681799    C    G    336.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519333    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:369,33,0
8    21927460    rs7386762    C    G    2130    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519333    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2163,172,0
8    21930007    rs3824334    G    A    165.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517418    GT:AD:DP:GQ:PL    1/1:1,7:8:15.05:199,15,0
8    21930068    rs3824336    A    G    118.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517418    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
8    21931141    rs143269534    CAAAAA    C    303.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.82;DB;DP=21;FS=0.0;HRun=22;HaplotypeScore=297.851;IndelType=D;MQ=34.77;MQ0=0;MQRankSum=0.671;QD=14.47;ReadPosRankSum=0.969;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517418    GT:AD:DP:GQ:PL    1/1:13,5:21:0.30:341,0,0
8    21931170    .    AAAAAAAAAAGAG    A    1651.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.729;DP=35;FS=0.0;HRun=0;HaplotypeScore=544.5761;IndelType=D;MQ=42.95;MQ0=0;MQRankSum=0.957;QD=47.19;ReadPosRankSum=2.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517418    GT:AD:DP:GQ:PL    1/1:25,10:35:52.29:1694,52,0
8    21931177    .    AAAGAGAAAAAAG    A    1310.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.528;DP=30;FS=0.0;HRun=0;HaplotypeScore=514.0751;IndelType=D;MQ=43.82;MQ0=0;MQRankSum=-1.432;QD=43.68;ReadPosRankSum=0.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517418    GT:AD:DP:GQ:PL    1/1:16,13:30:59.02:1353,59,0
8    21931487    rs4427168    A    T    329.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517418    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:363,27,0
8    21937667    rs6557781    T    C    3013.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=59.16;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265800    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3046,232,0
8    21937870    rs7835670    G    A    2276.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265800    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2310,178,0
8    21939435    rs6557782    C    T    165.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=P395L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21939284_21939877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381455    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
8    21955116    rs11352    C    T    227.11    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.083;QD=17.47;ReadPosRankSum=-1.312;SNPEFF_AMINO_ACID_CHANGE=V129;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21955027_21955131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289921    GT:AD:DP:GQ:PL    0/1:4,9:13:99:257,0,119
8    21955552    rs1973254    T    C    119.56    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.91;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488968    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:150,0,26
8    21956108    rs35497596    A    G    292    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.666;QD=16.22;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=T315A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21955934_21956130;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289921    GT:AD:DP:GQ:PL    0/1:8,10:18:99:322,0,229
8    21956222    rs79246017    T    A    74.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.39;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427751    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,103
8    21958333    rs1552283    T    C    4514.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.98;QD=34.46;ReadPosRankSum=1.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427751    GT:AD:DP:GQ:PL    1/1:1,130:131:99:4515,337,0
8    21959191    rs6557810    A    G    583.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=24.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427751    GT:AD:DP:GQ:PL    1/1:0,23:24:54.14:617,54,0
8    21959638    rs13267096    A    G    556.63    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=40;Dels=0.0;FS=1.639;HRun=0;HaplotypeScore=4.092;MQ=59.42;MQ0=0;MQRankSum=-0.423;QD=13.92;ReadPosRankSum=-0.078;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427751    GT:AD:DP:GQ:PL    0/1:14,23:40:99:587,0,365
8    21959639    rs13253275    C    T    541.03    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=40;Dels=0.0;FS=5.755;HRun=1;HaplotypeScore=3.4269;MQ=59.42;MQ0=0;MQRankSum=0.909;QD=13.53;ReadPosRankSum=-0.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427751    GT:AD:DP:GQ:PL    0/1:15,24:40:99:571,0,444
8    21959877    rs7812435    T    G    407.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=37.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427751    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:440,33,0
8    21964802    rs1552286    C    T    653.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM160B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289921    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:686,54,0
8    21965113    rs3739435    T    C    747.77    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.325;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8822;MQ=58.2;MQ0=0;MQRankSum=0.339;QD=11.5;ReadPosRankSum=0.145;SNPEFF_AMINO_ACID_CHANGE=M147V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21964383_21965406;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522405    GT:AD:DP:GQ:PL    0/1:37,28:65:99:778,0,1191
8    21967304    rs7844781    C    T    119.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=15;Dels=0.0;FS=2.059;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.12;QD=7.95;ReadPosRankSum=0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312841    GT:AD:DP:GQ:PL    0/1:9,6:15:99:149,0,229
8    21967309    rs7817171    A    C    154.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=16;Dels=0.0;FS=2.171;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=9.68;ReadPosRankSum=-0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312841    GT:AD:DP:GQ:PL    0/1:10,6:16:99:185,0,264
8    21973970    rs6557829    C    A    241.15    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9305;MQ=60.0;MQ0=0;MQRankSum=-1.041;QD=14.19;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517699    GT:AD:DP:GQ:PL    0/1:6,11:17:99:271,0,155
8    21974032    rs6557830    A    C    113.56    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.71;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517699    GT:AD:DP:GQ:PL    0/1:1,4:5:22.75:144,0,23
8    21974427    rs112173147    G    T    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_AMINO_ACID_CHANGE=P1113;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21974388_21974552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381418    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
8    21976367    rs4872300    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517699    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
8    21976872    rs12677278    G    A    109.44    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=9.95;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517699    GT:AD:DP:GQ:PL    0/1:6,5:11:99:139,0,199
8    21978072    rs11135859    A    G    179.28    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=19;Dels=0.0;FS=2.527;HRun=0;HaplotypeScore=0.9997;MQ=58.78;MQ0=0;MQRankSum=-0.612;QD=9.44;ReadPosRankSum=-0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518461    GT:AD:DP:GQ:PL    0/1:10,9:19:99:209,0,316
8    21978088    rs11779694    G    A    130.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.109;QD=9.3;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518461    GT:AD:DP:GQ:PL    0/1:6,8:14:99:160,0,204
8    21984488    rs12681529    G    A    535.03    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=3.892;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.28;MQ0=0;MQRankSum=-2.93;QD=16.72;ReadPosRankSum=1.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518377    GT:AD:DP:GQ:PL    0/1:13,19:32:99:565,0,309
8    21984650    rs12675745    A    G    721.24    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.557;DB;DP=63;Dels=0.0;FS=0.948;HRun=2;HaplotypeScore=0.9979;MQ=58.97;MQ0=0;MQRankSum=0.275;QD=11.45;ReadPosRankSum=1.726;SNPEFF_AMINO_ACID_CHANGE=F435;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21984550_21985342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312841    GT:AD:DP:GQ:PL    0/1:33,30:63:99:751,0,961
8    21984945    rs12675375    C    T    458.48    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.415;DB;DP=32;Dels=0.0;FS=2.198;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.302;QD=14.33;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=G337D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_21984550_21985342;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312841    GT:AD:DP:GQ:PL    0/1:15,17:32:99:488,0,500
8    22020066    rs13248346    T    C    1495.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=31.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFTPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522880    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1528,123,0
8    22020294    rs2070684    C    A    849.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFTPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522880    GT:AD:DP:GQ:PL    1/1:0,26:26:63.21:883,63,0
8    22021037    rs4715    C    A    433.11    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=32;Dels=0.0;FS=1.393;HRun=1;HaplotypeScore=0.734;MQ=59.28;MQ0=0;MQRankSum=-0.113;QD=13.53;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=T138N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22020949_22021059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFTPC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318561    GT:AD:DP:GQ:PL    0/1:15,17:32:99:463,0,447
8    22021207    rs2070685    C    T    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.33;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFTPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518615    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,140
8    22021517    rs1124    G    A    371.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=26;Dels=0.0;FS=6.239;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.408;QD=14.29;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=S133N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22021396_22021564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFTPC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524255    GT:AD:DP:GQ:PL    0/1:13,13:26:99:402,0,362
8    22053559    .    C    A    278.73    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=17.42;ReadPosRankSum=-1.699;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517324    GT:AD:DP:GQ:PL    0/1:5,11:16:99:309,0,163
8    22058904    rs11784926    G    A    192.52    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=11.32;ReadPosRankSum=0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397814    GT:AD:DP:GQ:PL    0/1:10,7:17:99:223,0,295
8    22059606    rs13257482    G    A    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306349    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:70,0,32
8    22066855    rs4463424    C    T    327.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306385    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:360,27,0
8    22081708    rs4075536    G    A    418.63    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.91;DB;DP=26;Dels=0.0;FS=1.68;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.789;QD=16.1;ReadPosRankSum=0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYHIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518274    GT:AD:DP:GQ:PL    0/1:12,14:26:99:449,0,273
8    22084503    rs11547656    C    T    500.74    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=19.26;ReadPosRankSum=-2.503;SNPEFF_AMINO_ACID_CHANGE=P19;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22084364_22084538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYHIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523252    GT:AD:DP:GQ:PL    0/1:10,16:26:99:531,0,293
8    22104691    rs34392777    G    T    646.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.802;DB;DP=54;Dels=0.0;FS=2.921;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.272;QD=11.97;ReadPosRankSum=0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306433    GT:AD:DP:GQ:PL    0/1:30,24:54:99:676,0,925
8    22105502    rs1126677    T    C    544.89    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.856;DB;DP=45;Dels=0.0;FS=1.292;HRun=1;HaplotypeScore=1.841;MQ=59.49;MQ0=0;MQRankSum=0.148;QD=12.11;ReadPosRankSum=-0.694;SNPEFF_AMINO_ACID_CHANGE=A114;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22105370_22105521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306433    GT:AD:DP:GQ:PL    0/1:24,21:45:99:575,0,779
8    22138506    rs80293649    G    T    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,101
8    22140763    rs77142846    G    C    457.87    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.916;DB;DP=26;Dels=0.0;FS=2.006;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=17.61;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:9,17:26:99:488,0,230
8    22146224    .    G    A    539.19    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.964;DP=33;Dels=0.0;FS=6.789;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.473;QD=16.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:16,17:33:99:569,0,462
8    22162491    rs78323775    A    G    246.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=15.42;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:8,8:16:99:277,0,276
8    22163331    rs12543697    C    T    172.94    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=11.53;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:7,8:15:99:203,0,232
8    22163619    rs76050285    A    G    181.23    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.271;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.78;MQ0=0;MQRankSum=-1.693;QD=9.54;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:11,8:19:99:211,0,370
8    22165438    rs75567888    C    A    643.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.62;DB;DP=35;Dels=0.0;FS=5.997;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=18.39;ReadPosRankSum=-0.926;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:14,21:35:99:674,0,496
8    22165595    rs80273500    A    G    443.54    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.441;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=59.25;MQ0=0;MQRankSum=-0.695;QD=14.31;ReadPosRankSum=-0.814;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:14,17:31:99:474,0,476
8    22167667    rs74853495    T    G    173.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=10.83;ReadPosRankSum=-1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:10,6:16:99:203,0,280
8    22171767    rs79526373    A    C    148.62    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=14.86;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:4,5:10:99:179,0,102
8    22171967    rs71513878    C    T    374.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.159;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.738;QD=31.25;ReadPosRankSum=-1.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    1/1:1,11:12:0.86:404,1,0
8    22175533    rs4242431    G    A    106.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:3,4:7:99:136,0,103
8    22175567    rs4242432    C    T    245.12    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=14.42;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:9,8:17:99:275,0,304
8    22210234    rs4872476    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    22210805    rs139535064    GT    G    210.52    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=17;FS=0.0;HRun=3;HaplotypeScore=68.6562;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=-0.473;QD=12.38;ReadPosRankSum=0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:9,8:17:99:250,0,298
8    22211756    rs66554545    T    A    342.03    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.22;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.33;MQ0=0;MQRankSum=0.61;QD=12.22;ReadPosRankSum=0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356766    GT:AD:DP:GQ:PL    0/1:15,13:28:99:372,0,484
8    22262098    rs896375    A    G    614.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.77;MQ0=0;QD=27.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240095    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:647,54,0
8    22262142    rs896376    G    A    1384.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=49.44;MQ0=0;QD=24.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240095    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1417,120,0
8    22262183    rs896377    G    C    1811.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.13;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240095    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1844,153,0
8    22262228    rs111662782    AGCTGCT    A    3605.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.0;HRun=0;HaplotypeScore=670.3093;IndelType=D;MQ=40.0;MQ0=0;QD=52.25;SNPEFF_AMINO_ACID_CHANGE=KLL2K;SNPEFF_CODON_CHANGE=aagctgctg/aag;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_8_22262209_22262493;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240095    GT:AD:DP:GQ:PL    1/1:15,54:69:99:3605,163,0
8    22262321    rs896378    T    C    2264.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.12;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=L33P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22262209_22262493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240095    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2297,190,0
8    22262379    rs33999442    C    T    1915.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.75;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=G52;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22262209_22262493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240095    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1948,150,0
8    22262418    rs2293144    A    G    1671.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.56;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=L65;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22262209_22262493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240095    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1704,126,0
8    22266054    rs3817445    G    T    151.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=16.84;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517552    GT:AD:DP:GQ:PL    0/1:4,5:9:99:182,0,141
8    22273687    rs6558052    T    C    580.50    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.847;DB;DP=51;Dels=0.0;FS=7.778;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.392;QD=11.38;ReadPosRankSum=-2.727;SNPEFF_AMINO_ACID_CHANGE=H170;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22273586_22273782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000517370    GT:AD:DP:GQ:PL    0/1:30,21:51:99:610,0,966
8    22276854    rs28479396    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517370    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
8    22277040    rs10101909    G    A    2642.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=35.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517370    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2676,202,0
8    22379856    rs2469770    G    A    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP3CC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240139    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
8    22389900    rs2449340    T    G    541.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP3CC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240139    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:575,42,0
8    22398414    rs7430    G    C    126.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522037    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
8    22398462    rs7431    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
8    22419191    rs2469764    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    22419555    rs34995301    G    C    33.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.04;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523402    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:63,0,28
8    22421355    rs2449336    A    G    236.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=0.473;QD=13.88;ReadPosRankSum=1.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523402    GT:AD:DP:GQ:PL    0/1:8,8:17:99:266,0,289
8    22421395    rs2469762    G    A    333.92    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7798;MQ=55.86;MQ0=0;MQRankSum=-0.158;QD=14.52;ReadPosRankSum=-2.477;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523402    GT:AD:DP:GQ:PL    0/1:7,16:23:91.06:364,0,91
8    22422150    rs3758038    A    G    473.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523402    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:506,39,0
8    22422923    rs960509    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523402    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    22424489    rs11779261    A    G    588.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517500    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:622,48,0
8    22426650    rs3830695    TC    T    1243.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.31;DB;DP=35;FS=0.0;HRun=1;HaplotypeScore=95.7598;IndelType=D;MQ=60.92;MQ0=0;MQRankSum=0.746;QD=35.53;ReadPosRankSum=0.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517500    GT:AD:DP:GQ:PL    1/1:2,33:35:11.34:1285,11,0
8    22426859    rs13258049    G    C    215.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517500    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:248,21,0
8    22428658    rs2449331    T    C    919.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_AMINO_ACID_CHANGE=I167T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22428423_22428734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523348    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:953,72,0
8    22432377    rs710098    C    A    419.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=A145;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22432180_22432518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SORBS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520207    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:453,36,0
8    22438313    rs922810    T    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422517    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    22442287    rs4872003    A    G    912.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=29.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422517    GT:AD:DP:GQ:PL    1/1:0,31:31:81.22:945,81,0
8    22442661    rs2294047    A    G    1797.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=A149;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22442530_22442675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265810    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1831,144,0
8    22459073    rs900273    T    C    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.57;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC037459.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430850    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,110
8    22460204    rs34268501    A    G    216.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=13.53;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC037459.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430850    GT:AD:DP:GQ:PL    0/1:8,8:16:99:246,0,278
8    22460893    rs112182952    G    A    650.57    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.849;DB;DP=36;Dels=0.0;FS=3.004;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=18.07;ReadPosRankSum=-0.78;SNPEFF_AMINO_ACID_CHANGE=L318;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22460798_22461626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381191    GT:AD:DP:GQ:PL    0/1:16,20:36:99:681,0,435
8    22463623    rs7843828    C    T    3001.17    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.672;DB;DP=250;DS;Dels=0.0;FS=0.993;HRun=0;HaplotypeScore=3.5363;MQ=59.76;MQ0=0;MQRankSum=-1.516;QD=12.0;ReadPosRankSum=1.27;SNPEFF_AMINO_ACID_CHANGE=G28;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22463598_22463689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1967;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308511    GT:AD:DP:GQ:PL    0/1:143,106:250:99:3031,0,4231
8    22463697    rs2291230    C    G    1618.02    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=8.267;DB;DP=126;DS;Dels=0.0;FS=2.36;HRun=2;HaplotypeScore=0.7887;MQ=59.82;MQ0=0;MQRankSum=-0.013;QD=12.84;ReadPosRankSum=2.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC037459.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450780    GT:AD:DP:GQ:PL    0/1:74,52:126:99:1648,0,2067
8    22464064    rs2291232    T    C    233.64    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=13;Dels=0.0;FS=4.228;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.97;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC037459.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450780    GT:AD:DP:GQ:PL    0/1:5,8:13:66.38:264,0,66
8    22464390    rs2291234    T    C    566.98    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.024;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.413;QD=17.72;ReadPosRankSum=1.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC037459.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450780    GT:AD:DP:GQ:PL    0/1:10,22:32:99:597,0,292
8    22465385    rs34027561    T    C    1271.90    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.584;DB;DP=70;Dels=0.0;FS=3.411;HRun=1;HaplotypeScore=1.8316;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=18.17;ReadPosRankSum=0.728;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289989    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1302,0,1046
8    22465427    rs6999893    T    C    1954.58    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.353;DB;DP=133;Dels=0.0;FS=1.168;HRun=0;HaplotypeScore=2.5482;MQ=59.83;MQ0=0;MQRankSum=0.394;QD=14.7;ReadPosRankSum=-1.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289989    GT:AD:DP:GQ:PL    0/1:65,68:133:99:1985,0,2129
8    22470710    rs1871902    G    A    55.14    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.9996;MQ=57.05;MQ0=0;MQRankSum=0.956;QD=6.89;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-582J16.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521025    GT:AD:DP:GQ:PL    0/1:5,3:8:85.14:85,0,170
8    22471399    rs720746    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-582J16.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521025    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    22471824    rs3736147    G    A    502.26    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=31;Dels=0.0;FS=5.979;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=16.2;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=S126;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22471605_22471827;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1967;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522599    GT:AD:DP:GQ:PL    0/1:15,16:31:99:532,0,508
8    22472256    rs75123235    G    T    32.47    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.96;MQ0=0;MQRankSum=1.061;QD=2.95;ReadPosRankSum=0.825;SNPEFF_AMINO_ACID_CHANGE=R79;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22471421_22474170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-582J16.5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521025    GT:AD:DP:GQ:PL    0/1:9,2:11:62.46:62,0,153
8    22473158    rs11781149    C    T    935.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.468;DB;DP=50;Dels=0.0;FS=1.097;HRun=0;HaplotypeScore=1.864;MQ=59.25;MQ0=0;MQRankSum=-0.376;QD=18.7;ReadPosRankSum=1.902;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_22471421_22474170;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-582J16.5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521025    GT:AD:DP:GQ:PL    0/1:20,30:50:99:965,0,606
8    22473465    rs7843128    T    C    622.93    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.128;DB;DP=44;Dels=0.0;FS=1.223;HRun=0;HaplotypeScore=2.4805;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=14.16;ReadPosRankSum=2.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276416    GT:AD:DP:GQ:PL    0/1:23,21:44:99:653,0,705
8    22473850    rs6558167    T    C    407.40    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.804;QD=15.67;ReadPosRankSum=0.305;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276416    GT:AD:DP:GQ:PL    0/1:10,16:26:99:437,0,315
8    22481449    rs1871900    A    G    248.97    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.662;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=10.82;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=F144;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22481428_22481562;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519513    GT:AD:DP:GQ:PL    0/1:12,11:23:99:279,0,362
8    22481483    .    T    C    324.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.372;DP=20;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=16.24;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=Y133C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22481428_22481562;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519513    GT:AD:DP:GQ:PL    0/1:8,12:20:99:355,0,243
8    22487388    rs6558170    C    G    292.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276416    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:325,24,0
8    22487422    rs6558171    T    C    360.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276416    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:394,30,0
8    22502207    rs67577418    CT    C    395.45    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=2.665;DB;DP=25;FS=0.0;HRun=2;HaplotypeScore=72.6195;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=15.82;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276416    GT:AD:DP:GQ:PL    0/1:12,13:25:99:434,0,422
8    22785013    rs1553778    T    C    545.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522278    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:579,45,0
8    22862763    rs2472566    T    C    279.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517528    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:313,24,0
8    22863004    rs2430811    A    G    1478.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517528    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1512,111,0
8    22863017    rs2466179    G    T    1272.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517528    GT:AD:DP:GQ:PL    1/1:0,36:36:96.32:1306,96,0
8    22863191    rs2430812    C    T    47.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517528    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:78,6,0
8    22863247    rs2430813    C    T    366.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517528    GT:AD:DP:GQ:PL    1/1:0,14:14:39.07:400,39,0
8    22863248    rs2430814    A    G    334.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517528    GT:AD:DP:GQ:PL    1/1:0,14:14:36.07:367,36,0
8    22864622    rs2466178    T    C    2776.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=58.92;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=S288;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22864241_22865259;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251822    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2810,220,0
8    22865320    rs2430815    T    G    1403.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517528    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1437,117,0
8    22865866    rs2430816    A    G    82.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=27.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517528    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
8    22881420    rs6557608    A    G    31.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251822    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
8    22881852    rs6557609    T    C    472.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251822    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:505,39,0
8    22885109    rs1105944    A    G    754.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TNFRSF10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518531    GT:AD:DP:GQ:PL    1/1:0,24:24:69.18:788,69,0
8    22886020    rs13265018    A    G    1563.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.57;SNPEFF_AMINO_ACID_CHANGE=V191A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22885844_22886115;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TNFRSF10B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276431    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1596,123,0
8    22886130    rs2293399    A    G    1968.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TNFRSF10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276431    GT:AD:DP:GQ:PL    1/1:0,59:60:99:2002,150,0
8    22886230    rs10092564    C    T    746.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TNFRSF10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276431    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:780,60,0
8    22887013    rs6420148    C    G    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TNFRSF10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276431    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    22888407    rs10866818    G    A    480.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TNFRSF10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276431    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:514,39,0
8    22926313    rs1129424    G    A    36.32    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DB;DP=14;Dels=0.0;FS=2.774;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.592;QD=2.59;ReadPosRankSum=1.944;SNPEFF_AMINO_ACID_CHANGE=P32L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22926264_22926692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TNFRSF10B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276431    GT:AD:DP:GQ:PL    0/1:11,3:14:66.32:66,0,345
8    22926498    rs11135695    G    A    292.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.096;QD=14.62;ReadPosRankSum=0.34;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_22926264_22926692;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TNFRSF10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276431    GT:AD:DP:GQ:PL    0/1:10,10:20:99:322,0,335
8    22960704    rs6557616    G    C    564.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=26.87;SNPEFF_AMINO_ACID_CHANGE=G64R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22960210_22961071;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397703    GT:AD:DP:GQ:PL    1/1:0,21:21:48.15:597,48,0
8    22969091    rs10111172    T    C    73.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356864    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
8    22972321    rs4242389    G    A    249.23    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.724;QD=10.84;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356864    GT:AD:DP:GQ:PL    0/1:14,9:23:99:279,0,437
8    22973350    rs73222549    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    22974325    rs11780493    G    A    2119.30    PASS    AB=0.206;AC=1;AF=0.50;AN=2;BaseQRankSum=4.596;DB;DP=97;Dels=0.0;FS=16.345;HRun=0;HaplotypeScore=4.128;MQ=50.85;MQ0=2;MQRankSum=1.462;QD=21.85;ReadPosRankSum=4.744;SNPEFF_AMINO_ACID_CHANGE=P187;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22974154_22974950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356864    GT:AD:DP:GQ:PL    0/1:20,77:97:99:2149,0,172
8    22974370    rs151239314    G    A    164.90    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=2.462;DB;DP=106;Dels=0.0;FS=5.072;HRun=0;HaplotypeScore=5.198;MQ=46.96;MQ0=10;MQRankSum=-0.832;QD=1.56;ReadPosRankSum=4.712;SNPEFF_AMINO_ACID_CHANGE=P100;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22974154_22974563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540813    GT:AD:DP:GQ:PL    0/1:90,16:106:99:195,0,2002
8    22974415    rs11780526    G    A    590.77    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=0.168;DB;DP=108;Dels=0.0;FS=2.008;HRun=0;HaplotypeScore=3.0217;MQ=51.81;MQ0=8;MQRankSum=2.625;QD=5.47;ReadPosRankSum=1.349;SNPEFF_AMINO_ACID_CHANGE=P115;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22974154_22974563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540813    GT:AD:DP:GQ:PL    0/1:76,31:108:99:621,0,1813
8    22974450    rs9644063    T    C    3197.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.88;MQ0=8;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=I127T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_22974154_22974563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540813    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3231,247,0
8    23001988    rs1133782    A    G    650    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.349;DB;DP=63;Dels=0.0;FS=12.311;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=0.365;QD=10.32;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=L310S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23001963_23002148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312584    GT:AD:DP:GQ:PL    0/1:34,29:63:99:680,0,885
8    23004629    rs3924519    T    C    415.24    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=28;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=14.83;ReadPosRankSum=0.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312584    GT:AD:DP:GQ:PL    0/1:13,15:28:99:445,0,436
8    23021256    rs61760054    C    T    155.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=19.45;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312584    GT:AD:DP:GQ:PL    0/1:2,6:8:60.89:186,0,61
8    23021346    rs11135703    G    A    128.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=8.55;ReadPosRankSum=1.591;SNPEFF_AMINO_ACID_CHANGE=P35S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23021299_23021543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312584    GT:AD:DP:GQ:PL    0/1:9,6:15:99:158,0,259
8    23021448    .    T    C    177.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=12.7;ReadPosRankSum=-0.965;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_8_23021299_23021543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10D;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000312584    GT:AD:DP:GQ:PL    0/1:6,8:14:99:208,0,159
8    23049292    rs2230229    C    T    501.94    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.504;QD=9.65;ReadPosRankSum=0.485;SNPEFF_AMINO_ACID_CHANGE=R441K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23047965_23049526;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221132    GT:AD:DP:GQ:PL    0/1:31,21:52:99:532,0,1035
8    23054779    rs3824218    T    C    1139.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524158    GT:AD:DP:GQ:PL    1/1:0,34:34:90.26:1172,90,0
8    23058220    rs20576    T    G    619.34    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.751;DB;DP=51;Dels=0.0;FS=2.359;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.767;QD=12.14;ReadPosRankSum=-0.483;SNPEFF_AMINO_ACID_CHANGE=E228A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23058200_23058273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221132    GT:AD:DP:GQ:PL    0/1:28,23:51:99:649,0,831
8    23059265    rs11294851    TC    T    188.64    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=2.372;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=86.8156;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=12.58;ReadPosRankSum=1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221132    GT:AD:DP:GQ:PL    0/1:8,7:15:99:228,0,313
8    23059280    rs4872078    G    T    173.38    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.721;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6208;MQ=58.71;MQ0=0;MQRankSum=0.362;QD=9.63;ReadPosRankSum=2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221132    GT:AD:DP:GQ:PL    0/1:11,7:18:99:203,0,363
8    23059324    rs20575    C    G    291.06    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.674;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;MQRankSum=-1.088;QD=9.39;ReadPosRankSum=-2.134;SNPEFF_AMINO_ACID_CHANGE=R209T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23059321_23059432;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221132    GT:AD:DP:GQ:PL    0/1:18,13:31:99:321,0,523
8    23060256    rs6557634    T    C    533.49    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.99;DB;DP=48;Dels=0.0;FS=1.202;HRun=0;HaplotypeScore=1.8317;MQ=59.52;MQ0=0;MQRankSum=1.479;QD=11.11;ReadPosRankSum=1.169;SNPEFF_AMINO_ACID_CHANGE=H141R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23060161_23060274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221132    GT:AD:DP:GQ:PL    0/1:26,22:48:99:563,0,809
8    23069574    rs13274366    T    C    459.21    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=18;Dels=0.0;FS=5.563;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=25.51;ReadPosRankSum=-0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221132    GT:AD:DP:GQ:PL    0/1:5,13:18:99:489,0,138
8    23106665    rs2280934    A    G    307.36    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.514;DB;DP=21;Dels=0.0;FS=6.69;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.599;QD=14.64;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313219    GT:AD:DP:GQ:PL    0/1:11,10:21:99:337,0,364
8    23112662    rs3736025    C    T    144.48    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313219    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:174,0,23
8    23113866    rs79754531    T    A    408.21    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=18.56;ReadPosRankSum=0.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519984    GT:AD:DP:GQ:PL    0/1:9,13:22:99:438,0,293
8    23114203    rs67393714    G    GTT    477.17    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=0.824;DB;DP=49;FS=0.0;HRun=14;HaplotypeScore=298.5521;IndelType=I;MQ=53.52;MQ0=0;MQRankSum=-1.933;QD=9.74;ReadPosRankSum=-0.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519414    GT:AD:DP:GQ:PL    0/1:30,8:49:99:516,0,306
8    23116103    rs56160478    G    A    446.22    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=31;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.351;QD=14.39;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519414    GT:AD:DP:GQ:PL    0/1:17,14:31:99:476,0,542
8    23116431    rs4872098    C    T    772.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.67;MQ0=0;QD=36.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519414    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:806,63,0
8    23116673    .    TCA    T    209.73    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=3.637;DP=32;FS=1.619;HRun=0;HaplotypeScore=245.3497;IndelType=D;MQ=43.0;MQ0=0;MQRankSum=-1.338;QD=6.55;ReadPosRankSum=0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519414    GT:AD:DP:GQ:PL    0/1:25,7:32:99:249,0,480
8    23117643    rs2294125    T    C    495.50    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.995;DB;DP=33;Dels=0.0;FS=2.165;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.609;QD=15.02;ReadPosRankSum=-1.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519414    GT:AD:DP:GQ:PL    0/1:15,18:33:99:525,0,465
8    23118155    rs9828    T    C    929.80    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.502;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9965;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=20.21;ReadPosRankSum=0.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519414    GT:AD:DP:GQ:PL    0/1:16,30:46:99:960,0,544
8    23146095    rs11546682    A    G    358.91    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=29;Dels=0.0;FS=3.473;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.502;QD=12.38;ReadPosRankSum=-0.458;SNPEFF_AMINO_ACID_CHANGE=H60R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23146019_23146146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411463    GT:AD:DP:GQ:PL    0/1:14,15:29:99:389,0,458
8    23147564    rs3808536    G    A    150.51    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.736;QD=25.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000518454    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:180,0,23
8    23148930    rs2272762    A    G    790.60    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.39;DB;DP=48;Dels=0.0;FS=1.198;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.12;QD=16.47;ReadPosRankSum=-0.011;SNPEFF_AMINO_ACID_CHANGE=T116;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23148874_23149046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265806    GT:AD:DP:GQ:PL    0/1:19,29:48:99:821,0,519
8    23148940    rs2272761    G    A    816.13    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=46;Dels=0.0;FS=2.736;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.924;QD=17.74;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=V120M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23148874_23149046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265806    GT:AD:DP:GQ:PL    0/1:18,28:46:99:846,0,556
8    23148978    rs2272760    G    T    482.38    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.607;DB;DP=26;Dels=0.0;FS=1.775;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=18.55;ReadPosRankSum=-0.237;SNPEFF_AMINO_ACID_CHANGE=V132;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23148874_23149046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265806    GT:AD:DP:GQ:PL    0/1:10,16:26:99:512,0,303
8    23149089    rs2272759    A    G    215.06    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=16.54;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517633    GT:AD:DP:GQ:PL    0/1:5,8:13:99:245,0,170
8    23150878    rs13530    T    G    72.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.727;QD=18.01;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=L176R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23150816_23150886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265806    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:102,0,31
8    23152334    rs15946    A    G    43.37    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.072;QD=2.89;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=T118;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23152282_23152377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520480    GT:AD:DP:GQ:PL    0/1:12,3:15:73.36:73,0,372
8    23156281    rs62503960    C    T    166.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=15;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=11.1;ReadPosRankSum=1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=R3HCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265806    GT:AD:DP:GQ:PL    0/1:9,6:15:99:196,0,318
8    23160778    rs3765215    C    G    460.94    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.054;DB;DP=43;Dels=0.0;FS=10.1;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.791;QD=10.72;ReadPosRankSum=1.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    0/1:23,20:43:99:491,0,809
8    23167353    rs1063582    T    G    613.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=M570L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23167181_23167424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:647,48,0
8    23167560    rs57066724    T    C    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
8    23167609    rs13276054    G    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
8    23174425    rs3824213    T    C    121.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518878    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
8    23174748    rs13250587    A    G    696.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518878    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:730,57,0
8    23177619    rs13254579    C    A    491.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520925    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:525,42,0
8    23177833    rs10095102    T    C    32.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520925    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
8    23179514    rs13272093    G    A    658.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:692,54,0
8    23186007    rs1051146    T    C    1511.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=E346;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23185895_23186078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1544,120,0
8    23190899    rs80049931    G    A    530.40    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=3.06;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=18.29;ReadPosRankSum=-0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    0/1:10,19:29:99:560,0,217
8    23190941    rs1010156    T    C    338.95    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.46;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.014;QD=8.27;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=S313;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23190914_23191136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    0/1:26,15:41:99:369,0,832
8    23225559    rs1063577    G    A    767.52    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=3.22;DB;DP=62;Dels=0.0;FS=0.998;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=12.38;ReadPosRankSum=1.078;SNPEFF_AMINO_ACID_CHANGE=Y102;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23225510_23225947;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389131    GT:AD:DP:GQ:PL    0/1:33,29:62:99:798,0,869
8    23225745    rs2294133    C    T    487.98    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.068;DB;DP=44;Dels=0.0;FS=2.815;HRun=0;HaplotypeScore=1.663;MQ=59.58;MQ0=0;MQRankSum=-0.062;QD=11.09;ReadPosRankSum=1.975;SNPEFF_AMINO_ACID_CHANGE=P121;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23225510_23225947;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524144    GT:AD:DP:GQ:PL    0/1:26,18:44:99:518,0,773
8    23290451    rs17089244    C    T    166.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.545;QD=11.93;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=P605;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23290439_23290667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417069    GT:AD:DP:GQ:PL    0/1:7,7:14:99:197,0,250
8    23291640    rs3817676    T    C    142.43    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=20.35;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520936    GT:AD:DP:GQ:PL    0/1:2,5:7:50.76:172,0,51
8    23291835    rs1142283    T    C    454.68    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.337;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.871;QD=8.74;ReadPosRankSum=-1.911;SNPEFF_AMINO_ACID_CHANGE=P134;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23291830_23291991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000518471    GT:AD:DP:GQ:PL    0/1:31,21:52:99:485,0,962
8    23292136    rs12678121    C    T    34.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520936    GT:AD:DP:GQ:PL    0/1:2,2:4:57.44:65,0,57
8    23292985    rs3736652    A    G    324.38    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.304;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.836;QD=15.45;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=Y452;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23292905_23292990;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356206    GT:AD:DP:GQ:PL    0/1:9,11:21:99:354,0,318
8    23294392    rs2272643    C    T    599.32    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=40;Dels=0.0;FS=2.151;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=14.98;ReadPosRankSum=-0.549;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520936    GT:AD:DP:GQ:PL    0/1:21,19:40:99:629,0,671
8    23294412    rs2272642    A    G    747.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.19;DB;DP=57;Dels=0.0;FS=7.907;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=0.19;QD=13.12;ReadPosRankSum=1.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520936    GT:AD:DP:GQ:PL    0/1:32,24:57:99:778,0,953
8    23301340    rs11787224    A    C    456.99    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=2.286;DB;DP=23;Dels=0.0;FS=2.78;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.58;QD=19.87;ReadPosRankSum=1.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518718    GT:AD:DP:GQ:PL    0/1:8,15:23:99:487,0,227
8    23302164    rs2272640    A    G    155.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.355;QD=10.39;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356206    GT:AD:DP:GQ:PL    0/1:9,6:15:99:186,0,329
8    23307253    rs2293936    A    C    70.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.07;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356206    GT:AD:DP:GQ:PL    0/1:3,4:7:99:100,0,109
8    23423669    rs2942194    A    G    2301.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.019;DB;DP=176;Dels=0.01;FS=1.924;HRun=0;HaplotypeScore=6.8297;MQ=59.48;MQ0=0;MQRankSum=-0.059;QD=13.0;ReadPosRankSum=-1.524;SNPEFF_AMINO_ACID_CHANGE=I68V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23423621_23423849;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523930    GT:AD:DP:GQ:PL    0/1:88,88:176:99:2331,0,2545
8    23423758    rs10992    G    A    5438.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.7;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=P116;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_23423621_23423849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519973    GT:AD:DP:GQ:PL    1/1:1,155:156:99:5439,400,0
8    23429448    rs112442130    A    AT    352.57    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=35;FS=0.0;HRun=10;HaplotypeScore=118.5201;IndelType=I;MQ=57.64;MQ0=0;MQRankSum=0.052;QD=10.07;ReadPosRankSum=0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417331    GT:AD:DP:GQ:PL    0/1:18,16:35:99:392,0,193
8    23432326    rs1398232    T    A    3093.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3258;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290075    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3127,232,0
8    23432332    rs8534    C    T    1313.16    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=4.747;DB;DP=88;Dels=0.0;FS=0.914;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=-0.268;QD=14.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290075    GT:AD:DP:GQ:PL    0/1:43,45:88:99:1343,0,1127
8    23436267    rs7003250    A    G    102.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=8.57;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC051642.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399967    GT:AD:DP:GQ:PL    0/1:7,5:12:99:133,0,252
8    23538533    rs1567669    A    G    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.64;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX3-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300332    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
8    23626151    rs28510402    T    A    1135.15    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=107;Dels=0.0;FS=6.963;HRun=2;HaplotypeScore=0.8667;MQ=59.78;MQ0=0;MQRankSum=0.292;QD=10.61;ReadPosRankSum=0.448;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC012119.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401304    GT:AD:DP:GQ:PL    0/1:65,42:107:99:1165,0,1925
8    23626349    rs34202242    C    CT    659.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=30.2396;IndelType=I;MQ=61.18;MQ0=0;QD=38.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-175E9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523874    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:702,48,0
8    23702587    rs1992053    C    T    376.46    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.855;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.665;MQ=59.23;MQ0=0;MQRankSum=0.548;QD=12.55;ReadPosRankSum=1.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290271    GT:AD:DP:GQ:PL    0/1:17,13:30:99:406,0,569
8    23710105    rs578094    G    C    39.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290271    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
8    23712174    rs1438453    T    G    426.71    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=59.38;MQ0=0;MQRankSum=1.315;QD=11.53;ReadPosRankSum=-0.325;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524323    GT:AD:DP:GQ:PL    0/1:15,22:37:99:457,0,471
8    24187399    rs11994377    T    A    139.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.932;MQ=53.23;MQ0=0;MQRankSum=1.358;QD=7.74;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265769    GT:AD:DP:GQ:PL    0/1:6,12:18:15.39:169,0,15
8    24208649    rs10092862    C    T    1059.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523236    GT:AD:DP:GQ:PL    1/1:0,30:31:84.25:1092,84,0
8    24208847    rs7009516    G    A    2517.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=35.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523236    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2550,190,0
8    24211092    rs7836989    T    C    174.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518737    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
8    24211278    rs7815643    C    T    4077.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3839;MQ=59.3;MQ0=0;QD=33.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518737    GT:AD:DP:GQ:PL    1/1:0,119:120:99:4078,295,0
8    24211331    rs7814768    G    A    4207.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=35.35;SNPEFF_AMINO_ACID_CHANGE=V765M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_24211283_24211345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265769    GT:AD:DP:GQ:PL    1/1:0,119:119:99:4207,316,0
8    24211558    rs2289042    C    A    69.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518737    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
8    24211884    rs10694022    A    ATGTC    1836.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=85.3922;IndelType=I;MQ=49.64;MQ0=1;QD=65.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518737    GT:AD:DP:GQ:PL    1/1:2,23:26:75.26:1878,75,0
8    24211993    rs112777462    ACTAT    A    748.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=116.6741;IndelType=D;MQ=50.75;MQ0=0;QD=39.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397649    GT:AD:DP:GQ:PL    1/1:5,14:19:45.15:790,45,0
8    24212040    rs1058914    T    C    236.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397649    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:269,21,0
8    24241973    rs10087305    G    C    255.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMDEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520193    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
8    24256579    rs2291578    G    T    681.01    PASS    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=1.74;DB;DP=28;Dels=0.0;FS=3.033;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.918;QD=24.32;ReadPosRankSum=-1.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMDEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256412    GT:AD:DP:GQ:PL    0/1:2,26:28:16.75:711,0,17
8    24348221    rs1492401    T    A    335.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.187;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.331;QD=10.48;ReadPosRankSum=-1.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000175238    GT:AD:DP:GQ:PL    0/1:20,12:32:99:365,0,722
8    24771275    .    C    T    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.64;ReadPosRankSum=-0.72;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_24770525_24772386;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221166    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,148
8    24774683    rs196864    C    A    1740.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=P439T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_24774574_24776606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221166    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1774,147,0
8    24810088    rs1059111    T    A    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221169    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    24811064    rs11340767    AG    A    1575.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=7;HaplotypeScore=170.2467;IndelType=D;MQ=59.98;MQ0=0;QD=27.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221169    GT:AD:DP:GQ:PL    1/1:4,53:57:99:1618,159,0
8    25132735    rs4478580    T    A    198.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410074    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
8    25156296    rs2956656    T    G    207.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:240,21,0
8    25158026    rs2709639    G    A    249.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495236    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:283,21,0
8    25158072    rs11368290    AT    A    451.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=9;HaplotypeScore=82.2793;IndelType=D;MQ=59.93;MQ0=0;QD=23.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495236    GT:AD:DP:GQ:PL    1/1:0,19:19:54.03:494,54,0
8    25159665    rs868335    T    C    255.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=31.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495236    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:288,24,0
8    25159885    rs907157    G    A    863.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.112;DB;DP=60;Dels=0.0;FS=1.058;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.835;QD=14.39;ReadPosRankSum=0.318;SNPEFF_AMINO_ACID_CHANGE=V297;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25159841_25159970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:30,30:60:99:893,0,843
8    25166097    rs2666166    C    G    147.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481100    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:181,15,0
8    25166564    rs2666167    A    G    651.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481100    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:685,51,0
8    25168219    rs2709632    C    T    119.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478099    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
8    25174495    rs2666169    C    T    3135.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3168,235,0
8    25174710    rs2709627    C    T    3936.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.8;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3937,301,0
8    25174723    rs2666168    T    C    3317.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9559;MQ=59.76;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3317,256,0
8    25181356    rs2666174    C    T    3411.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8667;MQ=59.8;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3412,271,0
8    25182969    rs2666172    C    T    5408.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.85;MQ0=0;MQRankSum=-1.466;QD=34.45;ReadPosRankSum=0.688;SNPEFF_AMINO_ACID_CHANGE=S603;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25182880_25183063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:2,155:157:99:5408,381,0
8    25193556    rs2468898    G    C    135.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
8    25200148    rs10110351    A    G    650.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:1,18:19:51.17:683,51,0
8    25202915    rs2468901    A    G    1330.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1363,108,0
8    25203022    rs2468902    A    G    4172.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.642;MQ=59.32;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=T883;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25202991_25203127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4173,334,0
8    25225804    rs2257081    C    T    925.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.148;DB;DP=80;Dels=0.0;FS=1.117;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.624;QD=11.57;ReadPosRankSum=0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481728    GT:AD:DP:GQ:PL    0/1:48,32:80:99:956,0,1510
8    25226261    rs17198394    G    A    783.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.426;DB;DP=64;Dels=0.0;FS=6.24;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=2.46;QD=12.25;ReadPosRankSum=0.974;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481728    GT:AD:DP:GQ:PL    0/1:32,32:64:99:814,0,1019
8    25226380    rs10103130    A    G    82.12    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=7.47;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481728    GT:AD:DP:GQ:PL    0/1:7,4:11:99:112,0,249
8    25227226    rs2048084    G    T    62.35    SnpCluster    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.322;QD=6.93;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481728    GT:AD:DP:GQ:PL    0/1:5,4:9:92.35:92,0,174
8    25227229    rs2048083    T    G    110.14    SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=13.77;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481728    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,103
8    25227234    rs2048082    A    G    116.29    SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.38;QD=16.61;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481728    GT:AD:DP:GQ:PL    0/1:2,4:7:63.23:146,0,63
8    25227255    rs2659578    C    T    157.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481728    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
8    25230168    rs2271108    C    T    1522.78    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=1.351;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8308;MQ=59.22;MQ0=0;MQRankSum=-0.337;QD=18.35;ReadPosRankSum=-0.521;SNPEFF_AMINO_ACID_CHANGE=D1206;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25230075_25230234;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:35,48:83:99:1553,0,998
8    25230267    rs2271106    T    C    606.95    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=0.281;DB;DP=40;Dels=0.0;FS=1.559;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.222;QD=15.17;ReadPosRankSum=-0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:17,23:40:99:637,0,510
8    25230959    rs13276812    T    C    155.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
8    25231044    rs12676152    T    G    373.03    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.94;MQ0=0;MQRankSum=0.956;QD=15.54;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:11,13:24:99:403,0,342
8    25231117    rs3215159    C    CT    1027.35    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.885;DB;DP=63;FS=0.0;HRun=8;HaplotypeScore=159.0108;IndelType=I;MQ=59.69;MQ0=0;MQRankSum=-0.475;QD=16.05;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:27,37:63:99:1066,0,478
8    25231385    rs2271105    T    C    154.97    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=22.14;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:2,5:7:62.39:185,0,62
8    25231912    rs7014005    A    G    271.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.96;ReadPosRankSum=-1.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:6,10:16:99:301,0,184
8    25232484    rs7812830    T    C    96.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=16.06;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:2,4:6:64.35:126,0,64
8    25234688    rs6992056    T    C    972.48    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.046;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8248;MQ=59.54;MQ0=0;MQRankSum=0.694;QD=19.45;ReadPosRankSum=0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:22,28:50:99:1002,0,756
8    25234858    rs2659585    A    G    5647.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=K1285R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25234821_25234940;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5648,448,0
8    25235055    rs34962551    T    C    197.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.128;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.025;QD=8.25;ReadPosRankSum=0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:14,10:24:99:228,0,499
8    25237801    rs11989035    T    C    590.49    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=37;Dels=0.0;FS=6.647;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=15.96;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:13,24:37:99:620,0,451
8    25237963    rs17053525    A    G    445.79    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.509;DB;DP=28;Dels=0.0;FS=3.023;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.116;QD=15.92;ReadPosRankSum=0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:12,16:28:99:476,0,373
8    25240100    rs7837477    G    A    775.73    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.506;DB;DP=46;Dels=0.0;FS=4.227;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.279;QD=16.86;ReadPosRankSum=0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:21,25:46:99:806,0,517
8    25240499    rs7008785    G    A    63.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=46.95;MQ0=0;MQRankSum=-0.731;QD=12.68;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    0/1:1,4:5:27.28:93,0,27
8    25246481    rs2709602    G    A    296.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
8    25247821    rs113940021    TA    T    678.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=14;HaplotypeScore=141.3708;IndelType=D;MQ=59.54;MQ0=0;QD=16.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:3,34:41:99:721,109,0
8    25249545    rs6991928    C    T    467.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.62;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:500,39,0
8    25250423    rs6557840    A    G    1831.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1864,135,0
8    25257729    rs2659593    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463457    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    25258442    rs3750194    C    T    6238.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8471;MQ=59.38;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,187:187:99:6238,454,0
8    25261281    rs17053612    C    T    2139.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2173,163,0
8    25265290    rs77087078    G    A    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
8    25265327    rs2659591    A    C    134.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276440    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
8    25280666    rs2709608    A    C    2198.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221200    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2232,175,0
8    25287397    rs1812594    T    C    3712.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=37.12;SNPEFF_AMINO_ACID_CHANGE=L382;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25285366_25287489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221200    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3712,271,0
8    25290787    rs3215162    CT    C    1407.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=6;HaplotypeScore=114.7602;IndelType=D;MQ=58.06;MQ0=0;QD=29.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522493    GT:AD:DP:GQ:PL    1/1:2,45:47:99:1450,135,0
8    25293858    rs2012592    C    T    2659.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=37.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518067    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2693,199,0
8    25296743    rs75067977    T    TA    1414.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=64.5319;IndelType=I;MQ=61.3;MQ0=0;QD=42.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518067    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1457,99,0
8    25296930    rs2271112    C    T    2270.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518997    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2303,172,0
8    25297870    rs7017457    A    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=19.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
8    25300144    rs56385545    A    C    892.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520405    GT:AD:DP:GQ:PL    1/1:0,32:32:72.23:926,72,0
8    25301759    rs57257880    C    CTTT    262.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=16;HaplotypeScore=138.0447;IndelType=I;MQ=42.98;MQ0=0;QD=17.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520405    GT:AD:DP:GQ:PL    1/1:7,5:15:27.02:305,27,0
8    25303530    rs2063068    A    T    647.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.99;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517914    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:680,51,0
8    25317572    rs6991793    T    C    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330560    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
8    25317614    rs11786622    T    G    266.49    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=26.65;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330560    GT:AD:DP:GQ:PL    0/1:1,9:10:12.92:296,0,13
8    25317691    rs6987936    A    T    734.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330560    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:768,57,0
8    25317824    rs1506863    A    T    2800.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.46;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.42;MQ0=0;MQRankSum=1.118;QD=35.0;ReadPosRankSum=-0.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330560    GT:AD:DP:GQ:PL    1/1:1,79:80:99:2833,175,0
8    25318253    rs17053743    A    G    79.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330560    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
8    25323777    rs10108752    T    C    1773.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_AMINO_ACID_CHANGE=N143;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25323691_25323841;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380665    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1807,138,0
8    25325730    rs11996213    T    C    610.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330560    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:644,48,0
8    25327184    rs7817239    A    G    76.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=15.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330560    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:109,9,0
8    25340833    rs66537174    G    A    473.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519087    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:506,39,0
8    25344597    rs143497620    CA    C    73.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=12;HaplotypeScore=13.468;IndelType=D;MQ=66.18;MQ0=0;QD=14.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521098    GT:AD:DP:GQ:PL    1/1:0,5:5:14.94:116,15,0
8    25364834    rs3829009    A    T    3875.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.84;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=R283S;SNPEFF_CODON_CHANGE=agA/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25364026_25365389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434814    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3876,304,0
8    25364960    rs6990278    A    G    7979    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.188;DB;DP=250;DS;Dels=0.0;FS=2.743;HRun=0;HaplotypeScore=2.1399;MQ=59.82;MQ0=0;MQRankSum=-0.889;QD=31.92;ReadPosRankSum=0.114;SNPEFF_AMINO_ACID_CHANGE=T325;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25364026_25365389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434814    GT:AD:DP:GQ:PL    1/1:2,248:250:99:7979,555,0
8    25708267    rs10866845    T    C    348.02    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.183;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.099;QD=18.32;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=S365;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_25708110_25708277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408929    GT:AD:DP:GQ:PL    0/1:5,14:19:99:378,0,152
8    25744257    rs6557865    G    A    1851.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408929    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1885,138,0
8    25766097    rs71551831    A    AT    787.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=5;HaplotypeScore=47.2419;IndelType=I;MQ=61.02;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408929    GT:AD:DP:GQ:PL    1/1:1,20:21:63.20:829,63,0
8    25801335    rs55721867    G    A    3518.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408929    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3519,256,0
8    25890478    rs1872497    G    C    646.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408929    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:680,51,0
8    25890549    rs7826952    T    C    564.36    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.206;DB;DP=37;Dels=0.0;FS=3.928;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=15.25;ReadPosRankSum=-1.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408929    GT:AD:DP:GQ:PL    0/1:18,19:37:99:594,0,574
8    25898316    rs12544694    C    T    74.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.59;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408929    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:104,0,31
8    25902008    rs4872387    G    A    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520164    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
8    25902117    rs4872388    G    T    668.25    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.924;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6644;MQ=60.32;MQ0=0;MQRankSum=0.534;QD=19.65;ReadPosRankSum=1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520164    GT:AD:DP:GQ:PL    0/1:14,20:34:99:698,0,257
8    25902171    rs68176588    CG    C    774.68    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=4.859;DB;DP=66;FS=0.0;HRun=8;HaplotypeScore=287.8374;IndelType=D;MQ=59.78;MQ0=0;MQRankSum=0.407;QD=11.74;ReadPosRankSum=0.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520164    GT:AD:DP:GQ:PL    0/1:31,35:66:99:814,0,596
8    26248986    rs62490973    G    A    100.65    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.15;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221209    GT:AD:DP:GQ:PL    0/1:7,4:11:99:131,0,247
8    26249018    rs2304300    G    A    79.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.79;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221209    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:109,0,30
8    26441275    rs415524    A    G    445.83    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.75;DB;DP=24;Dels=0.0;FS=3.278;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.046;QD=18.58;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311151    GT:AD:DP:GQ:PL    0/1:4,20:24:71.65:476,0,72
8    26441477    rs11786691    G    A    667.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.394;DB;DP=55;Dels=0.0;FS=10.5;HRun=0;HaplotypeScore=0.6651;MQ=59.58;MQ0=0;MQRankSum=0.426;QD=12.14;ReadPosRankSum=-0.235;SNPEFF_AMINO_ACID_CHANGE=L169;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_26441315_26441481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493789    GT:AD:DP:GQ:PL    0/1:30,25:55:99:698,0,944
8    26481771    rs327222    T    C    1971.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.8;SNPEFF_AMINO_ACID_CHANGE=S106;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_26481659_26481823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521913    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2005,153,0
8    26484064    rs4872457    T    G    1357.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.26;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523690    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1391,123,0
8    26484374    rs2289592    C    G    177.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523690    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:210,18,0
8    26492249    .    G    C    68.36    QDFilter2    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.218;DP=47;Dels=0.0;FS=11.083;HRun=1;HaplotypeScore=3.1757;MQ=51.12;MQ0=0;MQRankSum=-3.271;QD=1.45;ReadPosRankSum=1.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311151    GT:AD:DP:GQ:PL    0/1:29,18:47:98.35:98,0,630
8    26492560    rs1867042    C    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523093    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    26504975    rs6557933    A    G    605.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474808    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:639,51,0
8    26510792    rs708621    T    C    3154.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.2132;MQ=59.78;MQ0=0;QD=30.33;SNPEFF_AMINO_ACID_CHANGE=P128;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_26510748_26510913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545637    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3188,253,0
8    26627672    rs2229126    T    A    1439.68    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.641;DB;DP=101;Dels=0.0;FS=4.976;HRun=0;HaplotypeScore=1.8401;MQ=59.54;MQ0=0;MQRankSum=0.593;QD=14.25;ReadPosRankSum=-0.31;SNPEFF_AMINO_ACID_CHANGE=E465D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_26627222_26628183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276393    GT:AD:DP:GQ:PL    0/1:51,49:101:99:1470,0,1581
8    26628028    rs1048101    A    G    1546.85    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.275;DB;DP=104;Dels=0.0;FS=0.758;HRun=1;HaplotypeScore=3.3436;MQ=59.56;MQ0=0;MQRankSum=-0.398;QD=14.87;ReadPosRankSum=1.131;SNPEFF_AMINO_ACID_CHANGE=C347R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_26627222_26628183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276393    GT:AD:DP:GQ:PL    0/1:46,56:104:99:1577,0,1442
8    26636925    rs6989854    T    C    323.07    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.939;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=14.05;ReadPosRankSum=1.508;SNPEFF_AMINO_ACID_CHANGE=E302;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_26636570_26636947;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380572    GT:AD:DP:GQ:PL    0/1:12,11:23:99:353,0,432
8    26636981    rs58623861    G    A    77.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=9.74;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276393    GT:AD:DP:GQ:PL    0/1:4,4:8:99:108,0,141
8    26716472    rs536401    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358857    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    26868132    rs7822824    T    C    2789.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.31;MQ0=7;QD=27.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522530    GT:AD:DP:GQ:PL    1/1:0,100:100:99:2822,250,0
8    26868167    rs6557972    A    G    3120.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2064;MQ=27.84;MQ0=8;QD=26.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522530    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3154,286,0
8    26868333    rs28441062    C    A    745.47    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=4.123;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8936;MQ=49.96;MQ0=0;MQRankSum=-0.308;QD=15.21;ReadPosRankSum=-0.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522530    GT:AD:DP:GQ:PL    0/1:21,26:49:99:775,0,299
8    26868430    rs7835416    G    A    159.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.0;MQ0=2;QD=22.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522530    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:192,15,0
8    26869117    rs4341168    G    A    512.20    MQFilter40    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.047;DB;DP=75;Dels=0.0;FS=10.139;HRun=2;HaplotypeScore=1.6281;MQ=24.77;MQ0=7;MQRankSum=-0.209;QD=6.83;ReadPosRankSum=0.123;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522530    GT:AD:DP:GQ:PL    0/1:41,34:75:99:542,0,757
8    26869410    rs4270973    G    A    2900.65    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=4.679;DB;DP=177;Dels=0.0;FS=2.043;HRun=0;HaplotypeScore=1.445;MQ=50.04;MQ0=0;MQRankSum=-0.317;QD=16.3;ReadPosRankSum=-0.224;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522530    GT:AD:DP:GQ:PL    0/1:79,98:177:99:2931,0,1933
8    26869522    rs9692676    T    G    3233.06    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.74;DB;DP=201;Dels=0.0;FS=0.531;HRun=0;HaplotypeScore=2.7209;MQ=58.4;MQ0=0;MQRankSum=2.026;QD=16.08;ReadPosRankSum=0.168;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522530    GT:AD:DP:GQ:PL    0/1:94,107:201:99:3264,0,2892
8    26869785    rs9693865    C    G    68.10    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.84;MQ0=0;MQRankSum=0.0;QD=9.73;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613H2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522530    GT:AD:DP:GQ:PL    0/1:3,4:7:61.09:98,0,61
8    26906309    rs62502069    A    C    434.91    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=2.494;DB;DP=31;Dels=0.0;FS=1.566;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=0.912;QD=14.03;ReadPosRankSum=0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR548H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408689    GT:AD:DP:GQ:PL    0/1:12,19:31:99:465,0,375
8    26906433    rs150141473    TTAAAG    T    228.25    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=72.4672;IndelType=D;MQ=56.52;MQ0=0;MQRankSum=-0.667;QD=16.3;ReadPosRankSum=-2.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR548H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408689    GT:AD:DP:GQ:PL    0/1:9,5:14:99:267,0,771
8    27094548    rs10217008    A    G    169.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STMN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519614    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
8    27101204    rs4733040    T    A    270.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.98;DB;DP=26;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=1.7791;MQ=58.2;MQ0=0;MQRankSum=0.54;QD=10.39;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STMN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265770    GT:AD:DP:GQ:PL    0/1:12,14:26:99:300,0,376
8    27101206    rs7830662    A    C    277.62    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=27;Dels=0.0;FS=4.869;HRun=0;HaplotypeScore=1.7791;MQ=58.27;MQ0=0;MQRankSum=0.218;QD=10.28;ReadPosRankSum=-1.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STMN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265770    GT:AD:DP:GQ:PL    0/1:13,14:27:99:308,0,350
8    27147716    rs12386801    A    C    2105.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=29.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519219    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2139,169,0
8    27204598    rs4534095    A    G    889.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:923,75,0
8    27204663    rs2874826    A    G    464.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=55.21;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:1,14:15:39.12:498,39,0
8    27255003    rs28496151    G    A    356.36    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.34;MQ0=0;MQRankSum=-0.414;QD=10.18;ReadPosRankSum=-0.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496920    GT:AD:DP:GQ:PL    0/1:18,17:35:99:386,0,561
8    27255080    rs2241649    A    G    796.21    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.613;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.818;QD=10.76;ReadPosRankSum=1.42;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_27255065_27255305;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    0/1:44,30:74:99:826,0,1238
8    27255128    rs1045510    T    C    646.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.12;MQ0=0;MQRankSum=0.175;QD=8.18;ReadPosRankSum=-2.178;SNPEFF_AMINO_ACID_CHANGE=S14;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27255065_27255305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539100    GT:AD:DP:GQ:PL    0/1:52,26:79:99:676,0,1581
8    27255146    rs1045511    G    A    764.52    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.377;DB;DP=78;Dels=0.0;FS=1.937;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.132;QD=9.8;ReadPosRankSum=-2.451;SNPEFF_AMINO_ACID_CHANGE=T15;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27255065_27255305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    0/1:50,28:78:99:795,0,1378
8    27255263    rs1045512    A    G    838.51    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=87;Dels=0.0;FS=0.832;HRun=0;HaplotypeScore=0.9734;MQ=57.57;MQ0=0;MQRankSum=-0.208;QD=9.64;ReadPosRankSum=2.522;SNPEFF_AMINO_ACID_CHANGE=K54;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27255065_27255305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    0/1:53,34:87:99:869,0,1584
8    27255325    rs2241650    C    T    355.61    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.548;DB;DP=55;Dels=0.0;FS=13.218;HRun=0;HaplotypeScore=0.0;MQ=55.87;MQ0=0;MQRankSum=-1.478;QD=6.47;ReadPosRankSum=-1.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496920    GT:AD:DP:GQ:PL    0/1:35,20:55:99:386,0,1176
8    27255368    rs11267627    AGCAGCTCTCCTGCAGCCTC    A    719.37    PASS    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=3.595;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=471.5987;IndelType=D;MQ=53.3;MQ0=0;MQRankSum=-2.45;QD=23.21;ReadPosRankSum=0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496920    GT:AD:DP:GQ:PL    0/1:25,6:31:99:758,0,4278
8    27277537    rs1030526    G    A    382.25    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=-1.387;QD=15.29;ReadPosRankSum=0.789;SNPEFF_AMINO_ACID_CHANGE=T110;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27277412_27277590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    0/1:13,12:25:99:412,0,355
8    27279659    rs191412916    C    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521164    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    27279705    rs2241652    G    A    80.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521164    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
8    27288033    rs7827965    T    C    357.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.488;QD=12.76;ReadPosRankSum=-0.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412793    GT:AD:DP:GQ:PL    0/1:15,12:28:99:387,0,493
8    27288314    rs56373327    T    C    447.51    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.113;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=15.43;ReadPosRankSum=0.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412793    GT:AD:DP:GQ:PL    0/1:14,15:29:99:478,0,469
8    27289126    rs41276295    G    A    109.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=11.0;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412793    GT:AD:DP:GQ:PL    0/1:5,5:10:99:140,0,182
8    27291557    rs919493    T    C    1933.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412793    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1967,150,0
8    27291749    rs12056620    C    T    471.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=18.85;ReadPosRankSum=0.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412793    GT:AD:DP:GQ:PL    0/1:10,15:25:99:501,0,342
8    27293865    rs7005936    C    T    1098.13    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=5.501;DB;DP=92;Dels=0.0;FS=0.974;HRun=0;HaplotypeScore=2.8514;MQ=59.75;MQ0=0;MQRankSum=0.575;QD=11.94;ReadPosRankSum=1.38;SNPEFF_AMINO_ACID_CHANGE=H193;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27293768_27293865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397497    GT:AD:DP:GQ:PL    0/1:53,39:92:99:1128,0,1392
8    27293989    rs2241654    G    A    59.87    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.99;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461615    GT:AD:DP:GQ:PL    0/1:7,3:10:89.87:90,0,255
8    27294532    rs2163176    C    G    2210.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8658;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461615    GT:AD:DP:GQ:PL    1/1:0,67:68:99:2243,187,0
8    27294606    rs7005954    G    C    1827.17    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.053;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8053;MQ=59.83;MQ0=0;MQRankSum=-0.165;QD=13.44;ReadPosRankSum=-1.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461615    GT:AD:DP:GQ:PL    0/1:70,66:136:99:1857,0,2082
8    27294823    rs6996922    T    C    1192.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461615    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1226,102,0
8    27295109    rs2288617    A    G    374.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461615    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:407,30,0
8    27297696    rs2241657    T    C    523.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495097    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:557,45,0
8    27298078    rs2241658    A    G    118.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495097    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
8    27303126    rs4733064    A    G    168.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:201,18,0
8    27308538    rs751018    G    A    775.01    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=1.746;DB;DP=43;Dels=0.0;FS=4.722;HRun=0;HaplotypeScore=0.9469;MQ=59.46;MQ0=0;MQRankSum=-0.42;QD=18.02;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    0/1:15,28:43:99:805,0,414
8    27308585    rs751019    A    C    407.57    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.836;DB;DP=38;Dels=0.0;FS=7.36;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-1.284;QD=10.73;ReadPosRankSum=1.045;SNPEFF_AMINO_ACID_CHANGE=K542T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27308560_27308595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397497    GT:AD:DP:GQ:PL    0/1:23,15:38:99:438,0,763
8    27308849    rs2251430    A    G    114.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.14;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:0,4:5:12.04:147,12,0
8    27309379    rs891393    T    C    38.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
8    27310546    rs3735758    A    G    858.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397497    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:892,72,0
8    27311703    rs1879184    T    C    1289.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=T834;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27311671_27311808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1323,108,0
8    27312040    rs10093964    C    T    1083.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397497    GT:AD:DP:GQ:PL    1/1:0,35:35:90.27:1116,90,0
8    27312135    rs7007145    G    A    1021.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=35.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397497    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:1054,81,0
8    27315726    rs1879183    T    C    275.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240132    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:308,24,0
8    27315876    rs1879182    A    G    612.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.89;MQ0=0;QD=29.15;SNPEFF_AMINO_ACID_CHANGE=A918;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27315811_27316903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:0,21:21:48.14:645,48,0
8    27315900    rs1879181    A    G    721.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.37;SNPEFF_AMINO_ACID_CHANGE=L926;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27315811_27316903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:755,57,0
8    27316117    rs2271920    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240132    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
8    27321597    rs3735757    G    C    86.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338238    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
8    27369334    rs7816586    A    G    1267.81    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.888;DB;DP=75;Dels=0.0;FS=2.449;HRun=0;HaplotypeScore=1.9774;MQ=58.76;MQ0=0;MQRankSum=0.614;QD=16.9;ReadPosRankSum=0.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520666    GT:AD:DP:GQ:PL    0/1:30,44:75:99:1298,0,816
8    27373865    rs751141    G    A    1705.61    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=3.899;DB;DP=131;Dels=0.0;FS=3.225;HRun=0;HaplotypeScore=3.1526;MQ=59.68;MQ0=0;MQRankSum=0.532;QD=12.92;ReadPosRankSum=-0.035;SNPEFF_AMINO_ACID_CHANGE=R104Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27373837_27373915;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000517536    GT:AD:DP:GQ:PL    0/1:72,58:131:99:1736,0,1978
8    27401142    rs2291635    G    A    139.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=17.49;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520623    GT:AD:DP:GQ:PL    0/1:3,5:8:99:170,0,103
8    27401964    rs1126452    A    C    861.69    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=72;Dels=0.0;FS=0.926;HRun=2;HaplotypeScore=2.5973;MQ=59.42;MQ0=0;MQRankSum=1.977;QD=11.97;ReadPosRankSum=-0.047;SNPEFF_AMINO_ACID_CHANGE=P348;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27401961_27402436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000517536    GT:AD:DP:GQ:PL    0/1:38,33:72:99:892,0,1156
8    27402074    rs1042032    A    G    515.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.332;DB;DP=36;Dels=0.0;FS=9.834;HRun=0;HaplotypeScore=0.8941;MQ=58.18;MQ0=0;MQRankSum=0.142;QD=14.32;ReadPosRankSum=0.332;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380476    GT:AD:DP:GQ:PL    0/1:18,18:36:99:545,0,608
8    27402132    rs1042064    T    C    100.85    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.318;QD=5.93;ReadPosRankSum=0.474;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPHX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380476    GT:AD:DP:GQ:PL    0/1:12,5:17:99:131,0,440
8    27456253    rs2279590    T    C    367.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.051;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=14.14;ReadPosRankSum=-0.923;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316403    GT:AD:DP:GQ:PL    0/1:13,13:26:99:398,0,451
8    27461772    rs3216167    CA    C    310.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.381;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=49.8214;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=-0.718;QD=15.53;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518050    GT:AD:DP:GQ:PL    0/1:10,10:20:99:350,0,406
8    27462481    rs7982    A    G    1266.75    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.877;DB;DP=92;Dels=0.0;FS=5.394;HRun=0;HaplotypeScore=0.9987;MQ=59.75;MQ0=0;MQRankSum=-1.592;QD=13.77;ReadPosRankSum=-0.822;SNPEFF_AMINO_ACID_CHANGE=H128;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27462441_27462852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLU;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520012    GT:AD:DP:GQ:PL    0/1:45,47:92:99:1297,0,1354
8    27466315    rs1532278    T    C    178.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=57.9;MQ0=0;MQRankSum=0.248;QD=19.78;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519472    GT:AD:DP:GQ:PL    0/1:3,6:9:95.97:208,0,96
8    27593581    rs3735747    A    T    143.98    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=11.08;ReadPosRankSum=-1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521220    GT:AD:DP:GQ:PL    0/1:7,6:13:99:174,0,255
8    27593650    rs10081527    T    C    1785.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.98;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524084    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1819,144,0
8    27598042    rs71553881    GA    G    705.27    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=5.755;DB;DP=82;FS=0.945;HRun=7;HaplotypeScore=220.4301;IndelType=D;MQ=59.38;MQ0=0;MQRankSum=1.092;QD=8.6;ReadPosRankSum=0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356537    GT:AD:DP:GQ:PL    0/1:50,32:82:99:744,0,1489
8    27598172    rs7842672    A    G    489.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356537    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:523,39,0
8    27605447    rs2294028    T    A    30.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=2.55;ReadPosRankSum=-1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517979    GT:AD:DP:GQ:PL    0/1:8,4:12:60.59:61,0,289
8    27614138    rs2280884    A    G    106.38    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.0;QD=7.6;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356537    GT:AD:DP:GQ:PL    0/1:9,5:14:99:136,0,325
8    27632867    rs2006937    T    G    159    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305188    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
8    27633237    rs75977974    G    A    299.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=1.041;QD=19.98;ReadPosRankSum=2.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305188    GT:AD:DP:GQ:PL    0/1:5,10:15:99:330,0,168
8    27641609    rs1824449    G    A    1050.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.33;MQ0=0;QD=37.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523910    GT:AD:DP:GQ:PL    1/1:0,28:28:81.25:1083,81,0
8    27641706    rs145374594    TATTG    T    290.11    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=46.7493;IndelType=D;MQ=50.35;MQ0=0;MQRankSum=-1.036;QD=29.01;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523910    GT:AD:DP:GQ:PL    0/1:4,6:10:99:329,0,306
8    27645704    rs6558014    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305188    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
8    27649426    rs11414844    G    GT    159.44    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=16;FS=0.0;HRun=8;HaplotypeScore=36.4884;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=0.868;QD=9.96;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305188    GT:AD:DP:GQ:PL    0/1:8,7:16:99:198,0,154
8    27661085    rs62498042    G    A    31.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9492;MQ=55.21;MQ0=0;MQRankSum=1.026;QD=6.34;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397418    GT:AD:DP:GQ:PL    0/1:2,2:5:61.69:62,0,71
8    27667793    rs1052873    C    T    410.11    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.655;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.052;QD=13.23;ReadPosRankSum=0.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305188    GT:AD:DP:GQ:PL    0/1:17,14:31:99:440,0,553
8    27667969    rs2294092    C    G    628.91    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=4.876;DB;DP=41;Dels=0.0;FS=3.254;HRun=1;HaplotypeScore=0.0;MQ=57.94;MQ0=0;MQRankSum=0.013;QD=15.34;ReadPosRankSum=0.353;SNPEFF_AMINO_ACID_CHANGE=A274;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27667137_27668018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301905    GT:AD:DP:GQ:PL    0/1:22,19:41:99:659,0,641
8    27668726    rs17479454    C    T    268.60    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.327;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.449;QD=13.43;ReadPosRankSum=0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397418    GT:AD:DP:GQ:PL    0/1:10,9:20:99:299,0,297
8    27680576    rs727813    G    T    400.17    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=3.731;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8483;MQ=59.49;MQ0=0;MQRankSum=0.289;QD=8.89;ReadPosRankSum=0.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301905    GT:AD:DP:GQ:PL    0/1:27,16:45:99:430,0,814
8    27729406    rs71519658    G    C    453.66    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.264;QD=10.31;ReadPosRankSum=1.998;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354914    GT:AD:DP:GQ:PL    0/1:27,17:44:99:484,0,893
8    27729713    rs11776426    G    A    65.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.48;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354914    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:96,0,30
8    27737198    rs4732610    A    G    1614.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=R188;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27737086_27737283;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380385    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1648,123,0
8    27762235    rs2726984    T    C    428.81    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.14;MQ0=0;MQRankSum=0.395;QD=15.88;ReadPosRankSum=-0.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301906    GT:AD:DP:GQ:PL    0/1:10,17:27:99:459,0,282
8    27762537    rs939706    A    G    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301906    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
8    27764627    rs2726987    T    C    908.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.366;DB;DP=62;Dels=0.0;FS=2.725;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.492;QD=14.65;ReadPosRankSum=-1.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301906    GT:AD:DP:GQ:PL    0/1:31,31:62:99:938,0,1018
8    27779545    rs10103504    C    T    55.10    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.573;QD=6.12;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=L110;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27779088_27779762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301906    GT:AD:DP:GQ:PL    0/1:6,3:9:85.10:85,0,131
8    27779811    rs4732613    C    T    69.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.38;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301906    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:100,0,27
8    27823868    rs2726940    G    A    272.73    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.137;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.95;MQ0=0;MQRankSum=-0.134;QD=12.4;ReadPosRankSum=0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301906    GT:AD:DP:GQ:PL    0/1:9,13:22:99:303,0,308
8    27824143    .    C    T    158.65    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=7.93;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301906    GT:AD:DP:GQ:PL    0/1:13,7:20:99:189,0,402
8    27824287    rs939705    C    A    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301906    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:71,0,34
8    27884804    rs10111373    A    G    83.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
8    27886700    rs9644134    A    G    525.24    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.712;DB;DP=26;Dels=0.0;FS=8.587;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.186;QD=20.2;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:10,16:26:99:555,0,294
8    27886903    rs9314357    C    T    763.58    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=4.233;DB;DP=74;Dels=0.0;FS=4.603;HRun=0;HaplotypeScore=0.734;MQ=59.69;MQ0=0;MQRankSum=-0.561;QD=10.32;ReadPosRankSum=0.674;SNPEFF_AMINO_ACID_CHANGE=T678;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27886783_27886919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:41,33:74:99:794,0,1030
8    27887047    rs11786995    G    C    181.69    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.405;QD=12.11;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:8,7:15:99:212,0,292
8    27887722    rs7829031    G    C    709.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:743,57,0
8    27888626    rs2305456    A    C    238.73    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=32;Dels=0.0;FS=3.153;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=2.391;QD=7.46;ReadPosRankSum=-2.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:17,15:32:99:269,0,566
8    27888629    rs2305455    G    A    241.76    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=4.504;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=2.242;QD=7.33;ReadPosRankSum=-3.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:17,16:33:99:272,0,444
8    27890927    rs5890397    GGACTA    G    344.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=64.2283;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=-1.517;QD=28.71;ReadPosRankSum=1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:6,6:12:99:384,0,564
8    27898580    rs17058502    T    C    837.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.544;DB;DP=58;Dels=0.0;FS=7.558;HRun=1;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;MQRankSum=0.778;QD=14.43;ReadPosRankSum=0.498;SNPEFF_AMINO_ACID_CHANGE=R533;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27898568_27898732;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:29,29:58:99:867,0,879
8    27898761    rs150504368    G    A    611    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.577;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=13.28;ReadPosRankSum=-0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:24,22:46:99:641,0,703
8    27915830    rs4336563    T    C    257.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:291,21,0
8    27918057    rs7817227    T    C    2246.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=29.17;SNPEFF_AMINO_ACID_CHANGE=Q328R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27917943_27918118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2279,181,0
8    27925204    rs4732620    T    C    1759.40    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=117;Dels=0.0;FS=4.94;HRun=1;HaplotypeScore=3.255;MQ=57.22;MQ0=0;MQRankSum=1.061;QD=15.04;ReadPosRankSum=-0.012;SNPEFF_AMINO_ACID_CHANGE=S180G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27925031_27925261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    0/1:51,66:117:99:1789,0,1523
8    27927849    rs6998705    C    G    1257.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_AMINO_ACID_CHANGE=R23P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_27927769_27927873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341513    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1291,96,0
8    27950670    rs2305451    C    T    210.51    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.67;MQ0=0;MQRankSum=-0.044;QD=9.15;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520270    GT:AD:DP:GQ:PL    0/1:10,13:23:99:241,0,312
8    27957313    rs2290371    A    G    446.94    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=37;Dels=0.0;FS=8.161;HRun=0;HaplotypeScore=0.8667;MQ=59.38;MQ0=0;MQRankSum=0.294;QD=12.08;ReadPosRankSum=-1.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256398    GT:AD:DP:GQ:PL    0/1:22,15:37:99:477,0,610
8    27957556    rs2290369    G    A    308.94    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.874;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=12.36;ReadPosRankSum=0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256398    GT:AD:DP:GQ:PL    0/1:14,11:25:99:339,0,468
8    27967856    rs3213997    A    G    903.66    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=62;Dels=0.0;FS=2.886;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.781;QD=14.58;ReadPosRankSum=-0.809;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520270    GT:AD:DP:GQ:PL    0/1:27,35:62:99:934,0,899
8    28013579    rs4732832    A    C    243.54    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.02;DB;DP=24;Dels=0.0;FS=3.074;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.669;QD=10.15;ReadPosRankSum=-1.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256398    GT:AD:DP:GQ:PL    0/1:14,10:24:99:274,0,457
8    28186474    rs2645722    A    C    77.22    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNOC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301908    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:107,0,26
8    28186520    rs2614101    A    G    144.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=18.1;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNOC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301908    GT:AD:DP:GQ:PL    0/1:2,6:8:59.40:175,0,59
8    28186607    rs2645721    T    C    595.25    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=34;Dels=0.0;FS=2.896;HRun=3;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-1.205;QD=17.51;ReadPosRankSum=0.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNOC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301908    GT:AD:DP:GQ:PL    0/1:13,21:34:99:625,0,435
8    28186937    rs2614102    A    G    145.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=14.58;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNOC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301908    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,174
8    28206275    rs1046511    G    C    615.19    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.939;DB;DP=55;Dels=0.0;FS=1.163;HRun=0;HaplotypeScore=1.9903;MQ=57.87;MQ0=0;MQRankSum=0.973;QD=11.19;ReadPosRankSum=-0.954;SNPEFF_AMINO_ACID_CHANGE=A501;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_28203102_28206347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF395;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344423    GT:AD:DP:GQ:PL    0/1:32,23:55:99:645,0,736
8    28210613    rs6558057    G    C    498.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF395;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521912    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:532,39,0
8    28286174    rs1055741    T    G    105.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.45;SNPEFF_AMINO_ACID_CHANGE=D296A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_28285965_28286253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346498    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:138,12,0
8    28286885    rs57374675    C    T    999.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346498    GT:AD:DP:GQ:PL    1/1:0,33:33:75.23:1032,75,0
8    28287025    rs12334678    C    T    263.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=26.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346498    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:296,24,0
8    28341058    rs7843764    A    G    716.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FBXO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346498    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:750,57,0
8    28384712    rs2241802    A    G    1876.21    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.111;DB;DP=124;Dels=0.0;FS=4.403;HRun=1;HaplotypeScore=2.2829;MQ=59.63;MQ0=0;MQRankSum=-0.205;QD=15.13;ReadPosRankSum=-1.637;SNPEFF_AMINO_ACID_CHANGE=L145;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_28384664_28385681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240093    GT:AD:DP:GQ:PL    0/1:60,63:124:99:1906,0,1911
8    28633124    rs7462400    T    C    203.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.36;MQ0=0;QD=29.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521070    GT:AD:DP:GQ:PL    1/1:0,7:7:21.02:237,21,0
8    28651296    rs10694791    C    CA    527.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.303;DB;DP=49;FS=0.0;HRun=15;HaplotypeScore=348.1801;IndelType=I;MQ=50.3;MQ0=0;MQRankSum=0.524;QD=10.76;ReadPosRankSum=0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518510    GT:AD:DP:GQ:PL    1/1:22,19:49:38.01:569,38,0
8    28651557    rs71551607    TATAAAG    T    1134.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=127.1807;IndelType=D;MQ=34.93;MQ0=0;QD=63.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518510    GT:AD:DP:GQ:PL    1/1:1,17:18:51.18:1176,51,0
8    28653928    rs3824092    A    G    85.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518510    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
8    28670783    rs1005253    G    C    267.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520437    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:300,24,0
8    28671247    rs7841719    T    G    1207.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=40.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397363    GT:AD:DP:GQ:PL    1/1:0,30:30:90.30:1240,90,0
8    28695361    rs3735724    C    T    499.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397363    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:532,39,0
8    28950309    rs17526980    C    T    971.35    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.003;DB;DP=73;Dels=0.0;FS=2.088;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=1.037;QD=13.31;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=V11I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_28950262_28950395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404075    GT:AD:DP:GQ:PL    0/1:38,35:73:99:1001,0,1054
8    28970865    rs1466627    C    G    193.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=24.18;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524189    GT:AD:DP:GQ:PL    0/1:2,6:8:57.80:223,0,58
8    28979949    rs4732905    C    A    148.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=21.21;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524189    GT:AD:DP:GQ:PL    0/1:2,5:7:22.59:178,0,23
8    28981063    rs3750263    T    G    1367.18    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.744;DB;DP=113;Dels=0.0;FS=7.341;HRun=0;HaplotypeScore=1.832;MQ=60.0;MQ0=0;MQRankSum=0.544;QD=12.1;ReadPosRankSum=0.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524189    GT:AD:DP:GQ:PL    0/1:56,57:113:99:1397,0,1843
8    28984572    rs3763566    G    A    569.70    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=5.192;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.585;QD=12.95;ReadPosRankSum=1.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524189    GT:AD:DP:GQ:PL    0/1:26,18:44:99:600,0,739
8    28989789    rs9644054    T    C    900    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.9;DB;DP=67;Dels=0.0;FS=11.789;HRun=0;HaplotypeScore=1.811;MQ=59.66;MQ0=0;MQRankSum=-0.771;QD=13.43;ReadPosRankSum=1.737;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524189    GT:AD:DP:GQ:PL    0/1:33,34:67:99:930,0,891
8    28997850    rs2279444    A    G    678.78    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.992;QD=20.57;ReadPosRankSum=-0.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524189    GT:AD:DP:GQ:PL    0/1:12,21:33:99:709,0,372
8    28998179    rs2246691    A    G    1026.87    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.291;DB;DP=62;Dels=0.0;FS=1.196;HRun=0;HaplotypeScore=0.9996;MQ=59.63;MQ0=0;MQRankSum=-0.693;QD=16.56;ReadPosRankSum=-0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524189    GT:AD:DP:GQ:PL    0/1:27,35:62:99:1057,0,870
8    29004822    rs4732909    T    C    330.38    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=20.65;ReadPosRankSum=1.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523968    GT:AD:DP:GQ:PL    0/1:5,11:16:99:360,0,156
8    29005093    rs6986672    A    G    1421.16    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.255;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.221;QD=15.12;ReadPosRankSum=0.128;SNPEFF_AMINO_ACID_CHANGE=L614;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_29004909_29005119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521515    GT:AD:DP:GQ:PL    0/1:40,53:93:99:1451,0,1244
8    29005143    rs6986829    A    G    708.98    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.963;DB;DP=52;Dels=0.0;FS=2.07;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.861;QD=13.63;ReadPosRankSum=-0.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523968    GT:AD:DP:GQ:PL    0/1:28,23:52:99:739,0,936
8    29005901    rs118066129    T    C    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523968    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
8    29006063    rs34477845    T    C    91.25    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.264;DB;DP=17;Dels=0.0;FS=2.884;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=5.37;ReadPosRankSum=1.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523968    GT:AD:DP:GQ:PL    0/1:12,5:17:99:121,0,449
8    29006065    rs148408496    A    C    408.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.107;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=22.71;ReadPosRankSum=-0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523968    GT:AD:DP:GQ:PL    0/1:6,12:18:99:439,0,147
8    29023574    rs2291456    G    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521515    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    29033422    rs6558098    C    T    130.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521515    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
8    29037461    rs12056328    C    T    489.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6643;MQ=58.63;MQ0=0;MQRankSum=1.531;QD=28.81;ReadPosRankSum=-1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521515    GT:AD:DP:GQ:PL    1/1:1,16:17:45.11:523,45,0
8    29045809    rs9650432    T    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522846    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    29053761    rs146672114    TA    T    120.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DB;DP=17;FS=0.0;HRun=16;HaplotypeScore=73.307;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=1.47;QD=7.1;ReadPosRankSum=-1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521515    GT:AD:DP:GQ:PL    1/1:6,10:17:10.12:162,10,0
8    29197672    rs583034    A    G    117.20    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=10.65;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=S174;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_29197615_29197760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240100    GT:AD:DP:GQ:PL    0/1:5,6:11:99:147,0,165
8    29786337    .    C    T    614.02    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.478;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=16.16;ReadPosRankSum=-0.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC131254.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408076    GT:AD:DP:GQ:PL    0/1:18,20:38:99:644,0,503
8    29786360    rs13281163    T    C    433.05    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=14.93;ReadPosRankSum=0.938;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC131254.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408076    GT:AD:DP:GQ:PL    0/1:14,15:29:99:463,0,464
8    29886263    rs78006526    TA    T    455.87    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=3.268;DB;DP=51;FS=6.211;HRun=5;HaplotypeScore=132.9985;IndelType=D;MQ=60.27;MQ0=0;MQRankSum=1.623;QD=8.94;ReadPosRankSum=-1.012;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MAP2K1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519737    GT:AD:DP:GQ:PL    0/1:32,19:51:99:495,0,1044
8    29921288    rs3189926    A    C    245.21    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=57.66;MQ0=0;MQRankSum=1.271;QD=24.52;ReadPosRankSum=0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518340    GT:AD:DP:GQ:PL    0/1:2,8:10:45.58:275,0,46
8    29923732    rs2271367    G    A    165.34    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.792;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.03;QD=7.87;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522055    GT:AD:DP:GQ:PL    0/1:13,7:21:99:195,0,460
8    29927300    rs6468093    C    G    2155.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.77;SNPEFF_AMINO_ACID_CHANGE=A14;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_29927158_29927575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM66;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536273    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2188,168,0
8    29927321    rs6468094    A    G    2139.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.47;MQ0=0;QD=35.07;SNPEFF_AMINO_ACID_CHANGE=I143;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_29927158_29927575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM66;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522794    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2172,177,0
8    29931375    rs986636    T    C    2699.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521083    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2732,199,0
8    29940505    rs3824207    C    T    41.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517569    GT:AD:DP:GQ:PL    0/1:1,2:3:13.67:71,0,14
8    29989399    rs13272159    G    A    823.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPROTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442880    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:856,63,0
8    29989564    rs7844812    A    G    2422.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=T118A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_29989492_29989699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPROTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000520682    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2455,184,0
8    30332577    rs139944315    T    A    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
8    30404671    rs1106352    C    T    171.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=12.23;ReadPosRankSum=0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517860    GT:AD:DP:GQ:PL    0/1:8,6:14:99:201,0,292
8    30437639    rs62505275    C    T    84.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=55.66;MQ0=0;MQRankSum=-1.036;QD=7.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522833    GT:AD:DP:GQ:PL    0/1:6,4:11:99:115,0,202
8    30469805    rs7815625    A    C    695.15    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.101;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=59.13;MQ0=0;MQRankSum=1.77;QD=13.12;ReadPosRankSum=-0.525;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518445    GT:AD:DP:GQ:PL    0/1:27,26:53:99:725,0,846
8    30537223    rs35594378    CT    C    162.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=16;HaplotypeScore=109.4307;IndelType=D;MQ=53.94;MQ0=0;QD=7.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523295    GT:AD:DP:GQ:PL    1/1:9,11:23:37.70:204,38,0
8    30537332    rs8191038    C    A    66.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.14;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523295    GT:AD:DP:GQ:PL    0/1:3,3:6:96.81:97,0,107
8    30539623    rs2250192    T    G    1530.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=59.22;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221130    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1563,117,0
8    30541915    rs1465477    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221130    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
8    30546636    rs2551715    T    C    242.82    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.23;QD=11.56;ReadPosRankSum=-2.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221130    GT:AD:DP:GQ:PL    0/1:10,11:21:99:273,0,315
8    30546966    rs2253409    G    C    205.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221130    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
8    30554006    rs8190996    G    A    1753.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9117;MQ=60.0;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221130    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1786,135,0
8    30560887    rs3779647    C    T    378.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221130    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:412,30,0
8    30565884    rs2551707    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221130    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
8    30601610    rs3217273    TC    T    330.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=38.3061;IndelType=D;MQ=57.17;MQ0=0;QD=33.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522735    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:372,30,0
8    30601805    rs2278092    C    T    1136.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.5784;MQ=58.72;MQ0=0;QD=28.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265616    GT:AD:DP:GQ:PL    1/1:0,40:40:93.29:1169,93,0
8    30608773    rs1991111    A    G    554.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.55;MQ0=0;QD=34.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265616    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:588,45,0
8    30608976    rs2911690    C    T    4892.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265616    GT:AD:DP:GQ:PL    1/1:0,142:142:99:4893,355,0
8    30609061    rs2911689    T    G    2445.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522968    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2478,190,0
8    30609078    rs2911688    A    T    2265.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.59;MQ0=0;QD=34.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522968    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2298,172,0
8    30614577    rs7012289    T    C    83.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265616    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
8    30620840    rs11388922    G    GT    2541.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=4;HaplotypeScore=179.5165;IndelType=I;MQ=60.39;MQ0=0;QD=37.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518059    GT:AD:DP:GQ:PL    1/1:3,63:67:99:2584,190,0
8    30620964    rs2956010    T    C    600.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518059    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:633,48,0
8    30623996    rs2956016    T    C    42.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=UBXN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518059    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
8    30694153    rs6980502    A    G    191.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=21.3;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256246    GT:AD:DP:GQ:PL    0/1:3,6:9:96.55:222,0,97
8    30695226    rs2720593    C    T    3388.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=T2475;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30694319_30695577;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256246    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3389,259,0
8    30702525    rs323344    A    C    884.61    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=2.458;DB;DP=76;Dels=0.0;FS=3.198;HRun=1;HaplotypeScore=1.811;MQ=60.0;MQ0=0;MQRankSum=-0.683;QD=11.64;ReadPosRankSum=0.468;SNPEFF_AMINO_ACID_CHANGE=L1337V;SNPEFF_CODON_CHANGE=Tta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30699520_30706608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256246    GT:AD:DP:GQ:PL    0/1:45,31:76:99:915,0,1439
8    30702602    rs323345    T    C    1053.34    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=80;Dels=0.0;FS=3.058;HRun=0;HaplotypeScore=1.7834;MQ=59.42;MQ0=0;MQRankSum=1.565;QD=13.17;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=N1311S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30699520_30706608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256246    GT:AD:DP:GQ:PL    0/1:41,38:80:99:1083,0,1351
8    30702785    rs61736163    T    C    559.84    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.717;DB;DP=45;Dels=0.0;FS=4.716;HRun=0;HaplotypeScore=2.494;MQ=58.65;MQ0=0;MQRankSum=-1.449;QD=12.44;ReadPosRankSum=-0.353;SNPEFF_AMINO_ACID_CHANGE=N1250S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30699520_30706608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256246    GT:AD:DP:GQ:PL    0/1:24,21:45:99:590,0,783
8    30703431    rs323346    T    C    2078.83    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.213;DB;DP=136;Dels=0.0;FS=5.789;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-2.343;QD=15.29;ReadPosRankSum=-1.758;SNPEFF_AMINO_ACID_CHANGE=I1035V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30699520_30706608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256246    GT:AD:DP:GQ:PL    0/1:69,67:136:99:2109,0,2141
8    30704725    rs62000451    C    T    1554.38    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=95;Dels=0.0;FS=0.772;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=0.08;QD=16.36;ReadPosRankSum=-0.924;SNPEFF_AMINO_ACID_CHANGE=Q603;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30699520_30706608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256246    GT:AD:DP:GQ:PL    0/1:42,52:95:99:1584,0,1365
8    30706224    rs323347    A    G    495.06    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.088;DB;DP=39;Dels=0.0;FS=12.329;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=12.69;ReadPosRankSum=-0.91;SNPEFF_AMINO_ACID_CHANGE=C104R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30699520_30706608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256246    GT:AD:DP:GQ:PL    0/1:21,18:39:99:525,0,679
8    30916085    rs2737316    T    C    305.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:338,27,0
8    30922346    rs2725346    C    T    419.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
8    30924557    rs1800389    C    T    1640.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=C171;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30924549_30924698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1674,126,0
8    30933859    rs4733221    C    T    673.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:707,57,0
8    30938704    rs1800391    G    A    490.87    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.25;MQ0=0;MQRankSum=1.838;QD=15.83;ReadPosRankSum=-1.482;SNPEFF_AMINO_ACID_CHANGE=M387I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_30938383_30938812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    0/1:16,15:31:99:521,0,507
8    30941317    rs2737325    T    C    1472.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.54;MQ0=3;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1506,132,0
8    30958353    rs3087419    CT    C    539.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=7;HaplotypeScore=51.4135;IndelType=D;MQ=61.69;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,19:19:57.13:581,57,0
8    30968949    rs2194846    T    A    126.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
8    30989690    rs3213202    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    30999122    rs3024239    C    T    1722.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9893;MQ=59.5;MQ0=0;QD=37.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1756,129,0
8    31005017    rs3087415    T    TC    1013.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=45.7271;IndelType=I;MQ=60.0;MQ0=0;QD=44.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:1,22:23:66.23:1055,66,0
8    31024443    rs4987036    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    31024638    rs1801196    C    T    1122.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=S1361;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_31024538_31024746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298139    GT:AD:DP:GQ:PL    1/1:0,32:33:84.28:1156,84,0
8    32453358    rs3924999    G    A    3676.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;QD=35.35;SNPEFF_AMINO_ACID_CHANGE=R106Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_32453346_32453523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523534    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3676,271,0
8    33246538    rs16880849    A    G    1189.64    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.003;DB;DP=83;Dels=0.0;FS=0.834;HRun=0;HaplotypeScore=2.2312;MQ=60.0;MQ0=0;MQRankSum=1.353;QD=14.33;ReadPosRankSum=0.606;SNPEFF_AMINO_ACID_CHANGE=D323;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_33246433_33247316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335589    GT:AD:DP:GQ:PL    0/1:41,42:83:99:1220,0,1246
8    33246591    rs17855838    G    C    919.52    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.447;DB;DP=66;Dels=0.0;FS=7.621;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.529;QD=13.93;ReadPosRankSum=-2.552;SNPEFF_AMINO_ACID_CHANGE=L306V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_33246433_33247316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335589    GT:AD:DP:GQ:PL    0/1:32,34:66:99:950,0,1066
8    33246685    rs16880852    G    A    300.66    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.868;DB;DP=26;Dels=0.0;FS=7.509;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=2.024;QD=11.56;ReadPosRankSum=-0.675;SNPEFF_AMINO_ACID_CHANGE=Y274;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_33246433_33247316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335589    GT:AD:DP:GQ:PL    0/1:15,11:26:99:331,0,512
8    33310687    rs111799532    G    A    194.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.794;DB;DP=16;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=56.11;MQ0=0;MQRankSum=0.984;QD=12.16;ReadPosRankSum=0.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520503    GT:AD:DP:GQ:PL    0/1:8,8:16:99:225,0,243
8    33313329    rs2732315    G    A    746.63    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.066;QD=14.36;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=R56W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_33313288_33313413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380081    GT:AD:DP:GQ:PL    0/1:25,27:52:99:777,0,712
8    33313421    rs67865907    G    GA    241.01    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=42;FS=4.781;HRun=14;HaplotypeScore=274.6089;IndelType=I;MQ=58.94;MQ0=0;MQRankSum=2.036;QD=5.74;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327671    GT:AD:DP:GQ:PL    0/1:24,14:42:99:280,0,142
8    33342495    rs2676394    T    A    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519356    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
8    33342517    rs10111551    A    G    30.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519356    GT:AD:DP:GQ:PL    0/1:2,2:4:60.19:60,0,71
8    33347907    rs2732274    T    G    80.47    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=5.36;ReadPosRankSum=-0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517567    GT:AD:DP:GQ:PL    0/1:9,6:15:99:110,0,333
8    33353328    rs2459509    A    G    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
8    33354235    .    A    AGAT    218.89    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DP=16;FS=0.0;HRun=0;HaplotypeScore=53.7753;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=1.307;QD=13.68;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=-206D;SNPEFF_CODON_CHANGE=-/GAT;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_8_33354143_33354259;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360128    GT:AD:DP:GQ:PL    0/1:11,5:16:99:258,0,144
8    33355886    rs2676419    G    T    376.37    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=2.493;QD=18.82;ReadPosRankSum=-0.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:7,13:20:99:406,0,214
8    33356074    rs6468171    A    G    969.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.681;DB;DP=78;Dels=0.0;FS=0.946;HRun=1;HaplotypeScore=0.8667;MQ=58.81;MQ0=0;MQRankSum=1.441;QD=12.43;ReadPosRankSum=0.172;SNPEFF_AMINO_ACID_CHANGE=Q277R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_33355950_33358687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAK16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360128    GT:AD:DP:GQ:PL    0/1:42,36:78:99:999,0,1142
8    33356191    rs11445524    G    GT    104.06    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=19;FS=0.0;HRun=16;HaplotypeScore=155.598;IndelType=I;MQ=53.56;MQ0=0;MQRankSum=-0.825;QD=5.48;ReadPosRankSum=-1.468;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:9,6:19:11.33:143,0,11
8    33356827    rs2732278    T    A    93.08    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.589;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8606;MQ=58.99;MQ0=0;MQRankSum=1.102;QD=4.05;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:14,9:23:99:123,0,291
8    33357818    rs13439524    A    G    188.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=7.85;ReadPosRankSum=-0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:16,8:24:99:218,0,488
8    33369460    rs7016274    G    A    1630.57    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=6.378;DB;DP=118;Dels=0.0;FS=1.065;HRun=0;HaplotypeScore=2.3336;MQ=59.65;MQ0=0;MQRankSum=0.528;QD=13.82;ReadPosRankSum=0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523305    GT:AD:DP:GQ:PL    0/1:63,55:118:99:1661,0,1760
8    33369994    rs3098657    A    G    902.80    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.54;DB;DP=74;Dels=0.0;FS=7.877;HRun=0;HaplotypeScore=0.8321;MQ=59.06;MQ0=0;MQRankSum=-0.108;QD=12.2;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=N46;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_33369485_33370627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:39,35:74:99:933,0,1233
8    33370802    rs16881052    T    C    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.81;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:2,2:4:66.99:69,0,67
8    33370943    rs16881053    T    C    192.13    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.889;QD=8.01;ReadPosRankSum=-0.445;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:17,7:24:99:222,0,564
8    33370985    rs2581896    A    G    455.34    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=40;Dels=0.0;FS=1.262;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=11.38;ReadPosRankSum=0.876;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:23,17:40:99:485,0,689
8    33371074    rs77431541    G    C    328.86    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DB;DP=33;Dels=0.0;FS=12.638;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.505;QD=9.97;ReadPosRankSum=0.056;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:21,12:33:99:359,0,695
8    33371095    rs34867067    C    T    295.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=30;Dels=0.0;FS=9.967;HRun=0;HaplotypeScore=1.8305;MQ=60.0;MQ0=0;MQRankSum=0.374;QD=9.85;ReadPosRankSum=1.518;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:20,10:30:99:325,0,692
8    33371150    rs2581898    A    G    115.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.14;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=6.42;ReadPosRankSum=-0.796;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:12,6:18:99:146,0,433
8    33371183    rs34698596    C    T    125.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=8.4;ReadPosRankSum=0.551;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360742    GT:AD:DP:GQ:PL    0/1:10,5:15:99:156,0,359
8    33451026    rs2044162    C    T    944.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522982    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:977,75,0
8    35425870    rs2589340    T    A    418.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287272    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:452,36,0
8    35616905    .    A    G    1885.57    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.447;DP=144;Dels=0.0;FS=2.136;HRun=0;HaplotypeScore=0.8321;MQ=59.68;MQ0=0;MQRankSum=0.176;QD=13.09;ReadPosRankSum=0.257;SNPEFF_AMINO_ACID_CHANGE=K320R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_35616838_35616987;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449677    GT:AD:DP:GQ:PL    0/1:78,66:144:99:1916,0,2405
8    36664834    rs1079678    G    A    515.13    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.822;DB;DP=43;Dels=0.0;FS=3.547;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.211;QD=11.98;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:24,19:43:99:545,0,838
8    36666401    rs7819552    T    C    136.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=15.2;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522417    GT:AD:DP:GQ:PL    0/1:3,6:9:99:167,0,99
8    36674894    rs11996665    T    G    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523973    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
8    36716863    rs2067886    T    A    1067.57    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.882;DB;DP=67;Dels=0.0;FS=8.621;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.384;QD=15.93;ReadPosRankSum=0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:30,36:67:99:1098,0,858
8    36716959    rs4140678    C    T    451.37    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=4.123;DB;DP=37;Dels=0.0;FS=6.232;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.077;QD=12.2;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:21,16:37:99:481,0,578
8    36718619    rs13252968    C    A    269.84    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.077;QD=10.38;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:14,12:26:99:300,0,476
8    36721994    rs190151094    C    T    950.13    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.404;DB;DP=91;Dels=0.0;FS=4.054;HRun=0;HaplotypeScore=2.6336;MQ=59.49;MQ0=0;MQRankSum=0.095;QD=10.44;ReadPosRankSum=-0.268;SNPEFF_AMINO_ACID_CHANGE=P655L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_36721922_36722039;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:54,37:91:99:980,0,1712
8    36722542    rs12679589    G    A    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,151
8    36754104    rs10101240    C    T    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
8    36754130    rs7460480    T    G    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:70,0,32
8    36767024    rs28608091    T    C    2655.26    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.847;DB;DP=170;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=1.8663;MQ=59.75;MQ0=0;MQRankSum=-0.155;QD=15.62;ReadPosRankSum=0.509;SNPEFF_AMINO_ACID_CHANGE=W768R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_36766829_36767053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:76,94:170:99:2685,0,2424
8    36767145    rs13257544    C    G    378.01    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.464;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.17;MQ0=0;MQRankSum=-0.854;QD=13.5;ReadPosRankSum=-0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:15,12:28:99:408,0,485
8    36776267    rs10108041    T    G    818.68    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.58;MQ0=0;MQRankSum=1.136;QD=14.89;ReadPosRankSum=-2.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:28,27:55:99:849,0,964
8    36780209    rs1010669    A    G    906.92    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.724;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.907;QD=12.96;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399881    GT:AD:DP:GQ:PL    0/1:36,33:70:99:937,0,1147
8    36788693    rs6986249    T    C    1006.75    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.21;DB;DP=86;Dels=0.0;FS=4.171;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.582;QD=11.71;ReadPosRankSum=-2.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518904    GT:AD:DP:GQ:PL    0/1:45,41:86:99:1037,0,1474
8    37620076    rs6468438    A    G    90.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERLIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276461    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
8    37686749    rs6468442    A    G    914.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=29.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315215    GT:AD:DP:GQ:PL    1/1:0,31:31:78.20:947,78,0
8    37688572    rs4976890    A    C    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428068    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    37693302    rs10101560    T    C    782.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315215    GT:AD:DP:GQ:PL    1/1:0,27:27:72.14:815,72,0
8    37693347    rs55636939    C    A    112.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315215    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
8    37696874    rs6998793    C    T    114.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220659    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
8    37697906    rs10102577    G    A    539.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220659    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:572,45,0
8    37699195    rs4976898    C    G    35.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.74;SNPEFF_AMINO_ACID_CHANGE=P1106A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_37698913_37701494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR124;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416514    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
8    37706057    rs11777510    A    T    383.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315215    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:417,30,0
8    37706267    rs12541064    C    A    339.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR124;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315215    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:372,27,0
8    37720752    rs140212901    TTTTC    T    213.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=39.1113;IndelType=D;MQ=59.83;MQ0=0;QD=26.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287263    GT:AD:DP:GQ:PL    1/1:2,6:8:18.05:255,18,0
8    37728017    rs7817179    A    G    902.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_AMINO_ACID_CHANGE=M1185T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_37727938_37728046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330843    GT:AD:DP:GQ:PL    1/1:0,33:33:69.22:936,69,0
8    37728019    rs7820872    T    G    878.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=26.63;SNPEFF_AMINO_ACID_CHANGE=A1184;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_37727938_37728046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330843    GT:AD:DP:GQ:PL    1/1:0,33:33:69.22:912,69,0
8    37728750    rs2070493    G    A    306.68    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.288;QD=17.04;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287263    GT:AD:DP:GQ:PL    0/1:8,10:18:99:337,0,259
8    37730368    rs12541651    G    A    1905.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=30.73;SNPEFF_AMINO_ACID_CHANGE=A651V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_37728796_37730697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330843    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1938,144,0
8    37795341    rs4956534    T    C    813.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307599    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:846,72,0
8    37795433    rs4956535    T    C    53.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307599    GT:AD:DP:GQ:PL    1/1:0,3:3:9:86,9,0
8    37795434    rs4956536    G    C    53.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307599    GT:AD:DP:GQ:PL    1/1:0,3:3:9:86,9,0
8    37985897    rs2843740    A    G    991.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.2;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=K279;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_37985809_37985976;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASH2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545394    GT:AD:DP:GQ:PL    1/1:0,29:29:84.26:1024,84,0
8    37986561    rs2517394    G    C    2127.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASH2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518186    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2161,169,0
8    38003787    rs2720050    T    C    1178.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521236    GT:AD:DP:GQ:PL    1/1:0,37:37:93.29:1211,93,0
8    38005835    rs2229620    T    C    1007.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=L25;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_38005718_38005845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522753    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1041,78,0
8    38006330    rs35520501    TC    T    367.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=31.6028;IndelType=D;MQ=61.78;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276449    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:409,33,0
8    38029708    rs2843738    G    C    74.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311351    GT:AD:DP:GQ:PL    0/1:2,3:5:69.72:104,0,70
8    38205881    rs72630610    C    A    78.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHSC1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316985    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:109,0,29
8    38279641    rs17175975    G    A    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464163    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,74
8    38369831    rs4733951    A    C    1017.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358138    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1050,81,0
8    38370200    rs146268311    GAGACACAGAC    G    525.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=111.3191;IndelType=D;MQ=43.21;MQ0=0;QD=52.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358138    GT:AD:DP:GQ:PL    1/1:3,7:10:21.07:567,21,0
8    38385795    rs2445020    T    C    532.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf86;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358138    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:566,42,0
8    38458109    rs327933    C    A    1838.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.94;MQ0=0;QD=34.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RNF5P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524091    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1872,138,0
8    38458371    rs3802323    G    T    980.56    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.715;DB;DP=71;Dels=0.0;FS=18.979;HRun=0;HaplotypeScore=0.5784;MQ=58.67;MQ0=0;MQRankSum=-1.326;QD=13.81;ReadPosRankSum=-0.159;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RNF5P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524091    GT:AD:DP:GQ:PL    0/1:39,32:71:99:1011,0,1197
8    38458552    rs55960313    G    GTCT    1678.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=83.2962;IndelType=I;MQ=50.69;MQ0=0;QD=54.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RNF5P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524091    GT:AD:DP:GQ:PL    1/1:1,27:26:72.25:1721,72,0
8    38458659    rs327934    C    T    305.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.08;MQ0=0;QD=23.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RNF5P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524091    GT:AD:DP:GQ:PL    1/1:0,13:13:27.08:338,27,0
8    38458802    rs327935    A    C    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RNF5P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524091    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    38677932    rs2013586    A    G    1896.16    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.999;DB;DP=148;Dels=0.0;FS=0.617;HRun=0;HaplotypeScore=2.4521;MQ=59.69;MQ0=0;MQRankSum=-0.469;QD=12.81;ReadPosRankSum=-0.117;SNPEFF_AMINO_ACID_CHANGE=E195;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_38677040_38678153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443388    GT:AD:DP:GQ:PL    0/1:79,69:148:99:1926,0,2380
8    38684853    rs2037204    T    C    662.01    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.579;DB;DP=61;Dels=0.0;FS=1.041;HRun=2;HaplotypeScore=0.8321;MQ=59.24;MQ0=0;MQRankSum=0.87;QD=10.85;ReadPosRankSum=0.045;SNPEFF_AMINO_ACID_CHANGE=P102;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_38684686_38684893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348567    GT:AD:DP:GQ:PL    0/1:36,25:61:99:692,0,1043
8    38696162    rs147826161    A    G    409.94    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.907;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7465;MQ=58.28;MQ0=0;MQRankSum=0.222;QD=10.79;ReadPosRankSum=-1.316;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522904    GT:AD:DP:GQ:PL    0/1:22,16:38:99:440,0,808
8    38697649    rs13262797    T    C    128.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=52.45;MQ0=0;MQRankSum=-1.159;QD=9.85;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520340    GT:AD:DP:GQ:PL    0/1:6,6:13:99:158,0,136
8    38793682    rs4633027    T    G    378.13    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=17.19;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420274    GT:AD:DP:GQ:PL    0/1:10,12:22:99:408,0,347
8    38803893    rs13259004    G    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519640    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:70,0,70
8    38808217    rs34794075    G    C    108.36    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=15.48;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519640    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,100
8    38808612    rs10088613    A    G    60.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.358;QD=10.16;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519640    GT:AD:DP:GQ:PL    0/1:2,4:6:62.11:91,0,62
8    38808657    rs6984245    T    G    74.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=12.4;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519640    GT:AD:DP:GQ:PL    0/1:2,4:6:68.47:104,0,68
8    38809663    rs6984871    A    C    127.42    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=9.8;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420274    GT:AD:DP:GQ:PL    0/1:7,6:13:99:157,0,211
8    38826290    rs6996274    G    A    1304.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.04;QD=37.27;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420274    GT:AD:DP:GQ:PL    1/1:1,34:35:64.11:1338,64,0
8    38826365    rs6985572    T    C    224.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420274    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:257,21,0
8    38826792    rs9987126    T    G    126.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420274    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
8    38827185    rs34976167    GC    G    854.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=67.5598;IndelType=D;MQ=60.47;MQ0=0;QD=37.14;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_8_38826939_38827187;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000420274    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:896,69,0
8    38835456    rs4733960    T    C    538.91    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=45;Dels=0.0;FS=31.936;HRun=0;HaplotypeScore=2.4344;MQ=59.49;MQ0=0;MQRankSum=0.059;QD=11.98;ReadPosRankSum=1.261;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388745    GT:AD:DP:GQ:PL    0/1:24,21:45:99:569,0,823
8    38835666    rs4733961    T    C    77.33    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.944;DB;DP=23;Dels=0.0;FS=4.031;HRun=0;HaplotypeScore=0.9867;MQ=59.19;MQ0=0;MQRankSum=-0.857;QD=3.36;ReadPosRankSum=1.677;SNPEFF_AMINO_ACID_CHANGE=N322;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_38835472_38835666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302495    GT:AD:DP:GQ:PL    0/1:18,5:23:99:107,0,668
8    38840300    rs4733962    T    C    34.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-1.231;QD=6.82;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302495    GT:AD:DP:GQ:PL    0/1:2,3:5:64.10:64,0,71
8    38840591    rs7814264    C    T    296.03    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.732;QD=16.45;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302495    GT:AD:DP:GQ:PL    0/1:7,10:17:99:326,0,195
8    38845638    rs66513029    A    C    69.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=3.9591;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=6.94;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM2D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397070    GT:AD:DP:GQ:PL    0/1:5,5:10:99:99,0,143
8    38845716    rs7823125    A    G    64.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.14;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM2D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397070    GT:AD:DP:GQ:PL    0/1:1,3:4:29.73:95,0,30
8    38848850    rs4733895    C    T    281.05    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=19;Dels=0.0;FS=2.199;HRun=2;HaplotypeScore=1.7803;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=14.79;ReadPosRankSum=-1.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302495    GT:AD:DP:GQ:PL    0/1:8,11:19:99:311,0,277
8    38853620    rs6991968    G    A    101.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=51.3;MQ0=0;MQRankSum=0.421;QD=12.73;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM2D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397070    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,135
8    38853983    rs7840270    C    A    856.66    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.447;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.667;MQ=58.89;MQ0=0;MQRankSum=1.067;QD=13.6;ReadPosRankSum=-0.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM2D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520152    GT:AD:DP:GQ:PL    0/1:30,33:63:99:887,0,1020
8    38878960    rs6997721    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487273    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    38884342    rs10652213    G    GTTCT    1891.85    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.228;DB;DP=54;FS=3.457;HRun=0;HaplotypeScore=185.6714;IndelType=I;MQ=59.1;MQ0=0;MQRankSum=0.628;QD=35.03;ReadPosRankSum=-1.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487273    GT:AD:DP:GQ:PL    0/1:24,28:54:99:1931,0,795
8    38940330    rs144404192    G    C    209.47    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.788;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.76;QD=9.52;ReadPosRankSum=-0.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484143    GT:AD:DP:GQ:PL    0/1:13,9:22:99:239,0,470
8    39004620    rs35335280    A    T    154.81    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.694;QD=9.68;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379907    GT:AD:DP:GQ:PL    0/1:9,7:16:99:185,0,220
8    39007200    rs72640066    C    T    385.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.51;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=19.29;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379907    GT:AD:DP:GQ:PL    0/1:8,12:20:99:416,0,282
8    39009194    rs67270213    C    CT    86.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=10;FS=0.0;HRun=16;HaplotypeScore=48.4084;IndelType=I;MQ=58.77;MQ0=0;MQRankSum=0.742;QD=8.61;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521741    GT:AD:DP:GQ:PL    1/1:5,5:10:4.19:126,4,0
8    39018283    rs7014489    A    G    536.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379907    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:569,42,0
8    39022522    rs10088854    G    A    2863.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399831    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2896,214,0
8    39080632    rs7845771    C    G    3122.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.49;MQ0=0;QD=34.69;SNPEFF_AMINO_ACID_CHANGE=T361S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_39080559_39080757;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519315    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3155,232,0
8    39080824    rs4476978    T    A    1268.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379907    GT:AD:DP:GQ:PL    1/1:0,34:34:96.30:1301,96,0
8    39138547    .    C    T    43.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517416    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:73,0,33
8    39180499    rs3205882    A    T    261.40    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.962;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=1.025;QD=10.89;ReadPosRankSum=-0.673;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=ADAM5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359790    GT:AD:DP:GQ:PL    0/1:14,10:24:99:291,0,450
8    39181618    .    G    GAAA    617.06    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.221;DP=27;FS=3.522;HRun=7;HaplotypeScore=248.1787;IndelType=I;MQ=49.54;MQ0=0;MQRankSum=-2.611;QD=22.85;ReadPosRankSum=-1.049;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=ADAM5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497773    GT:AD:DP:GQ:PL    0/1:18,5:27:99:656,0,395
8    39181739    rs72580367    G    GT    1360.99    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.571;DB;DP=78;FS=6.138;HRun=1;HaplotypeScore=168.1504;IndelType=I;MQ=56.87;MQ0=0;MQRankSum=-1.065;QD=17.45;ReadPosRankSum=-0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=ADAM5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497773    GT:AD:DP:GQ:PL    0/1:42,36:78:99:1400,0,1218
8    39182716    rs10561768    CAT    C    925.34    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=5.028;DB;DP=43;FS=3.303;HRun=0;HaplotypeScore=135.8553;IndelType=D;MQ=61.25;MQ0=0;MQRankSum=-0.11;QD=21.52;ReadPosRankSum=-0.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=ADAM5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464901    GT:AD:DP:GQ:PL    0/1:20,23:43:99:964,0,1078
8    39249965    rs79650594    C    T    170.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=ADAM5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359790    GT:AD:DP:GQ:PL    1/1:0,6:6:18.02:203,18,0
8    39250206    rs61648346    A    G    750.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=ADAM5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359790    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:783,60,0
8    39251001    rs79656828    C    CT    381    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.488;DB;DP=16;FS=0.0;HRun=8;HaplotypeScore=31.301;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.488;QD=23.81;ReadPosRankSum=0.496;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=ADAM5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359790    GT:AD:DP:GQ:PL    1/1:3,13:16:14.65:423,15,0
8    39311600    rs7813010    C    T    825.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461344    GT:AD:DP:GQ:PL    1/1:0,27:27:63.19:858,63,0
8    39311654    rs62513562    A    G    594.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461344    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:628,45,0
8    39311677    rs7834545    T    C    412.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461344    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:445,33,0
8    39312886    rs10097769    G    A    697.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460383    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:731,54,0
8    39323387    rs7840918    T    C    586.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460383    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:620,45,0
8    39331010    rs7822450    G    A    370.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:403,30,0
8    39331043    rs7823494    C    T    469.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:503,36,0
8    39331093    rs7845028    T    C    505.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:539,39,0
8    39331368    rs9886514    C    T    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
8    39331447    rs62510460    C    T    173.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
8    39331451    rs143674425    CA    C    119.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=6;HaplotypeScore=35.8944;IndelType=D;MQ=60.0;MQ0=0;QD=23.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:161,15,0
8    39331555    rs28634287    G    A    178.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:211,15,0
8    39331585    rs62510461    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    39331940    rs13328413    C    T    118.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=29.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
8    39332004    rs71237167    C    CA    861.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.924;DB;DP=30;FS=0.0;HRun=10;HaplotypeScore=73.9488;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=-0.578;QD=28.71;ReadPosRankSum=-1.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484602    GT:AD:DP:GQ:PL    1/1:1,29:30:65.58:903,66,0
8    39332320    rs6997541    G    A    381.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460383    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:414,33,0
8    39418298    rs4316118    A    T    354.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.91;MQ0=0;QD=32.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-122L4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518465    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:388,30,0
8    39418318    rs4518630    G    C    132.96    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.77;MQ0=0;MQRankSum=0.212;QD=10.23;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-122L4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518465    GT:AD:DP:GQ:PL    0/1:8,5:13:99:163,0,196
8    39442292    rs7007924    T    G    1015.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    1/1:0,26:26:78.25:1049,78,0
8    39463823    rs13268577    T    C    333.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.437;DB;DP=28;Dels=0.0;FS=9.868;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.462;QD=11.93;ReadPosRankSum=-1.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    0/1:12,16:28:99:364,0,375
8    39487022    rs3735881    C    T    1081.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    1/1:0,32:32:90.28:1114,90,0
8    39495325    rs3824144    G    A    94.07    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=10.45;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    0/1:5,4:9:99:124,0,186
8    39496029    rs12708194    T    C    532.06    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.573;DB;DP=55;Dels=0.0;FS=2.386;HRun=1;HaplotypeScore=1.787;MQ=58.81;MQ0=0;MQRankSum=-0.591;QD=9.67;ReadPosRankSum=1.046;SNPEFF_AMINO_ACID_CHANGE=T223;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_39495984_39496065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522198    GT:AD:DP:GQ:PL    0/1:32,22:55:99:562,0,1051
8    39496202    rs13278646    G    A    108.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,143
8    39505826    rs3735880    C    A    355.62    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=22.23;ReadPosRankSum=0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    0/1:5,11:16:99:386,0,153
8    39521419    rs6988389    T    C    842.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:875,66,0
8    39525750    rs2305392    C    A    595.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.803;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.497;QD=13.54;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    0/1:24,20:44:99:626,0,820
8    39525829    rs2305393    A    C    121.79    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.991;QD=9.37;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    0/1:8,5:13:99:152,0,289
8    39537431    rs1376725    C    T    146.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.31;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    0/1:3,5:8:99:176,0,103
8    39537626    rs35980210    A    G    539.50    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.783;DB;DP=42;Dels=0.0;FS=2.807;HRun=0;HaplotypeScore=1.7206;MQ=59.45;MQ0=0;MQRankSum=0.775;QD=12.85;ReadPosRankSum=-0.038;SNPEFF_AMINO_ACID_CHANGE=T500A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_39537556_39537745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522198    GT:AD:DP:GQ:PL    0/1:24,18:42:99:569,0,715
8    39564151    rs7460786    C    T    166.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ADAM18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265707    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
8    39607102    rs113780233    G    GCA    655.10    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.331;DB;DP=23;FS=10.62;HRun=0;HaplotypeScore=170.5354;IndelType=I;MQ=54.61;MQ0=0;MQRankSum=-0.898;QD=28.48;ReadPosRankSum=0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265708    GT:AD:DP:GQ:PL    0/1:15,8:23:43.20:694,0,43
8    39607105    rs432103    C    CATGT    1604.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=105.4866;IndelType=I;MQ=54.61;MQ0=0;QD=69.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265708    GT:AD:DP:GQ:PL    1/1:8,14:23:69.15:1647,69,0
8    39607105    rs77172402    C    T    133.98    HaplotypeScoreFilter13    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.976;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=23.9327;MQ=54.61;MQ0=0;MQRankSum=0.031;QD=5.83;ReadPosRankSum=0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265708    GT:AD:DP:GQ:PL    0/1:14,9:23:99:164,0,281
8    39618637    rs10093751    G    T    188.83    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.38;QD=15.74;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265708    GT:AD:DP:GQ:PL    0/1:5,7:12:99:219,0,160
8    39618865    rs10097616    C    G    108.36    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=9.03;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265708    GT:AD:DP:GQ:PL    0/1:7,5:12:99:138,0,218
8    39644691    rs3779718    C    G    46.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265708    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:76,0,30
8    39682513    rs7845026    G    A    104.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.06;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265708    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,143
8    39695859    rs72642861    G    A    44.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=11.13;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265708    GT:AD:DP:GQ:PL    0/1:2,2:4:27.10:74,0,27
8    39776265    rs11304487    C    CA    267.54    PASS    AB=0.953;AC=1;AF=0.50;AN=2;BaseQRankSum=0.205;DB;DP=102;FS=0.0;HRun=23;HaplotypeScore=1230.6572;IndelType=I;MQ=38.25;MQ0=0;MQRankSum=-0.279;QD=2.62;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518804    GT:AD:DP:GQ:PL    0/1:95,5:102:11.87:306,0,12
8    39776288    rs146475723    AC    A    2059.55    PASS    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=5.041;DB;DP=165;FS=24.16;HRun=1;HaplotypeScore=1554.2835;IndelType=D;MQ=43.18;MQ0=0;MQRankSum=-3.203;QD=12.48;ReadPosRankSum=1.871;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518804    GT:AD:DP:GQ:PL    0/1:125,35:165:99:2099,0,492
8    39776291    .    AC    A    309.86    QDFilter2    AB=0.902;AC=1;AF=0.50;AN=2;BaseQRankSum=7.385;DP=174;FS=30.261;HRun=1;HaplotypeScore=1755.345;IndelType=D;MQ=44.56;MQ0=0;MQRankSum=-6.147;QD=1.78;ReadPosRankSum=3.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518804    GT:AD:DP:GQ:PL    0/1:155,18:174:99:349,0,1925
8    39780922    rs71946078    CAA    C    132.64    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DB;DP=32;FS=0.0;HRun=18;HaplotypeScore=213.1793;IndelType=D;MQ=57.37;MQ0=0;MQRankSum=0.811;QD=4.14;ReadPosRankSum=1.738;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519154    GT:AD:DP:GQ:PL    0/1:16,10:32:99:172,0,139
8    39780940    .    AG    A    37.01    QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=1.601;DP=51;FS=7.933;HRun=1;HaplotypeScore=299.8749;IndelType=D;MQ=57.43;MQ0=0;MQRankSum=-0.097;QD=0.73;ReadPosRankSum=0.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519154    GT:AD:DP:GQ:PL    0/1:44,7:51:76.04:76,0,629
8    39842443    .    C    CTTAT    658.15    PASS    AC=2;AF=1.00;AN=2;DP=16;FS=0.0;HRun=0;HaplotypeScore=50.8474;IndelType=I;MQ=61.34;MQ0=0;QD=41.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:6,10:16:30.10:700,30,0
8    39845691    rs75594276    C    A    70.43    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    0/1:1,4:5:30.61:100,0,31
8    39862881    rs10109853    C    T    3467.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.78;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=R235W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_39862846_39862897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3467,250,0
8    39870814    rs2955895    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    39870880    rs2955896    A    G    349.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:383,33,0
8    39871036    rs2955897    A    G    4292.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=33.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4292,346,0
8    39871298    rs67880804    T    TTAA    2270.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=206.4714;IndelType=I;MQ=48.96;MQ0=0;QD=61.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,33:37:99:2312,111,0
8    39872668    rs2955902    C    T    656.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:690,54,0
8    39872676    rs33936525    GA    G    711.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=10;HaplotypeScore=166.9125;IndelType=D;MQ=59.31;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,29:29:86.98:754,87,0
8    39872866    rs2981161    A    C    4853.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.37;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=S323;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_39872766_39873124;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4854,355,0
8    39873188    rs2981162    C    T    435.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:468,36,0
8    39873304    rs2955903    G    A    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389060    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
8    40011079    rs6474226    G    A    1744.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=V10I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_40010989_40012821;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315792    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1778,132,0
8    40389823    rs1429965    C    A    274.67    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.763;DB;DP=19;Dels=0.0;FS=5.653;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=14.46;ReadPosRankSum=2.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297737    GT:AD:DP:GQ:PL    0/1:7,12:19:99:305,0,154
8    40389842    rs1429966    T    C    317    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=26.42;ReadPosRankSum=-1.611;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297737    GT:AD:DP:GQ:PL    0/1:2,10:12:46.90:347,0,47
8    40438874    rs118005448    G    A    215.37    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.372;QD=14.36;ReadPosRankSum=1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297737    GT:AD:DP:GQ:PL    0/1:8,7:15:99:245,0,289
8    40554742    rs11781516    C    T    402.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.77;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.59;MQ0=0;MQRankSum=-0.975;QD=8.95;ReadPosRankSum=-0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523188    GT:AD:DP:GQ:PL    0/1:30,15:45:99:433,0,927
8    41518976    rs146341756    G    T    642.51    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.867;DB;DP=44;Dels=0.0;FS=2.86;HRun=0;HaplotypeScore=9.8675;MQ=58.41;MQ0=0;MQRankSum=0.611;QD=14.6;ReadPosRankSum=-0.658;SNPEFF_AMINO_ACID_CHANGE=R16;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_41518826_41519227;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-930P14.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520418    GT:AD:DP:GQ:PL    0/1:21,23:44:99:673,0,637
8    41519248    rs516946    T    C    388.61    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=33;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=1.565;MQ=56.09;MQ0=0;MQRankSum=0.302;QD=11.78;ReadPosRankSum=-1.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518715    GT:AD:DP:GQ:PL    0/1:16,17:33:99:419,0,473
8    41519462    rs515071    A    G    244.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=30;Dels=0.0;FS=1.987;HRun=2;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.506;QD=8.15;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    0/1:20,10:30:99:274,0,695
8    41525914    rs750625    C    T    367.24    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.758;DB;DP=50;Dels=0.0;FS=1.12;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.287;QD=7.34;ReadPosRankSum=0.184;SNPEFF_AMINO_ACID_CHANGE=V1755;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_41525785_41526082;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289734    GT:AD:DP:GQ:PL    0/1:33,17:50:99:397,0,1116
8    41529856    rs508112    A    G    536.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    1/1:0,21:21:48.11:569,48,0
8    41530482    rs499295    C    G    229.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:263,21,0
8    41553928    rs504574    C    G    336.98    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=60.0;MQ0=0;MQRankSum=0.478;QD=10.87;ReadPosRankSum=2.39;SNPEFF_AMINO_ACID_CHANGE=L1012;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_41553881_41554105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    0/1:17,14:31:99:367,0,425
8    41555473    rs2241896    T    C    404.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:438,33,0
8    41555740    rs492008    A    G    206.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
8    41574290    rs579414    C    T    283.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:317,24,0
8    41574736    rs575817    A    C    77.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
8    41583294    rs2304873    C    T    64.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=10.68;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=P199;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_41583279_41583464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289734    GT:AD:DP:GQ:PL    0/1:3,3:6:94.06:94,0,102
8    41615429    rs486223    G    A    2855.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.985;MQ=59.41;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265709    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2888,223,0
8    41794707    rs78804144    T    G    78.19    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.798;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.272;QD=4.12;ReadPosRankSum=-0.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485568    GT:AD:DP:GQ:PL    0/1:13,6:19:99:108,0,416
8    41798202    rs2929896    G    T    1425.84    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.125;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=14.7;ReadPosRankSum=-0.986;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485568    GT:AD:DP:GQ:PL    0/1:47,50:97:99:1456,0,1652
8    41804009    rs62508251    T    C    31.82    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.5947;MQ=47.12;MQ0=0;MQRankSum=1.668;QD=3.18;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265713    GT:AD:DP:GQ:PL    1/1:5,5:10:6.01:63,6,0
8    41834902    rs34473679    T    C    143.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=9.56;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265713    GT:AD:DP:GQ:PL    0/1:6,9:15:99:173,0,195
8    41906694    rs7006698    A    T    62.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=6.99;ReadPosRankSum=-0.248;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_41905896_41906820;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265713    GT:AD:DP:GQ:PL    0/1:6,3:9:92.93:93,0,224
8    42037924    rs2020922    T    A    4293.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=58.82;MQ0=0;QD=33.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521647    GT:AD:DP:GQ:PL    1/1:1,129:130:99:4293,337,0
8    42044954    rs1058720    G    A    489.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.46;SNPEFF_AMINO_ACID_CHANGE=D121;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_42044916_42045090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352041    GT:AD:DP:GQ:PL    1/1:0,20:20:39.11:522,39,0
8    42045655    rs2070713    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220809    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    42046212    rs2070710    C    T    130.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220809    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
8    42129505    rs3747811    A    T    710.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=37.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379708    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:743,57,0
8    42172017    rs7814513    C    G    951.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519735    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:984,78,0
8    42175303    rs2294100    A    T    4141.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=33.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518647    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4141,316,0
8    42186491    rs9785118    G    A    379.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522133    GT:AD:DP:GQ:PL    1/1:0,11:11:33.07:412,33,0
8    42186579    rs2272732    T    C    1779.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=36.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522133    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1812,135,0
8    42188550    rs1057741    A    G    540.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521225    GT:AD:DP:GQ:PL    1/1:0,18:18:45.13:573,45,0
8    42196441    rs3136717    C    T    504.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265421    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:537,42,0
8    42213256    rs2953983    G    A    175.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265421    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
8    42401987    rs2974347    A    G    82.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.01;MQ0=0;QD=27.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414154    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
8    42404040    rs2974349    C    T    190.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518574    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:223,18,0
8    42552633    rs4950    G    A    736.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_42552562_42552741;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHRNB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289957    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:769,57,0
8    42587796    rs4954    G    A    209.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHRNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289957    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
8    42591838    rs56313404    G    A    815.47    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.049;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=-0.066;QD=14.56;ReadPosRankSum=-0.164;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHRNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289957    GT:AD:DP:GQ:PL    0/1:29,27:56:99:845,0,999
8    42780832    rs68025005    A    AT    235.86    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DB;DP=24;FS=0.0;HRun=9;HaplotypeScore=54.1545;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=9.83;ReadPosRankSum=0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307602    GT:AD:DP:GQ:PL    0/1:14,10:24:99:275,0,177
8    42868455    rs68151717    CT    C    747.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=56;FS=9.345;HRun=14;HaplotypeScore=264.6833;IndelType=D;MQ=57.89;MQ0=0;MQRankSum=1.652;QD=13.35;ReadPosRankSum=1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524839    GT:AD:DP:GQ:PL    1/1:9,43:56:99:790,110,0
8    42959007    rs5024011    C    A    380.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC113191.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331373    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:414,30,0
8    43002052    .    CT    C    171.90    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=0.45;DP=60;FS=0.0;HRun=16;HaplotypeScore=510.9398;IndelType=D;MQ=53.38;MQ0=0;MQRankSum=0.43;QD=2.82;ReadPosRankSum=0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGSNAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332689    GT:AD:DP:GQ:PL    0/1:33,20:60:99:211,0,378
8    43013936    rs10958738    C    T    4161.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGSNAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332689    GT:AD:DP:GQ:PL    1/1:1,112:113:99:4162,310,0
8    43024625    rs4272427    T    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGSNAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332689    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    43046395    rs34826093    G    A    405.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGSNAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297798    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:438,33,0
8    43047593    rs17603428    G    A    522.88    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=38;Dels=0.0;FS=1.31;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.528;QD=13.76;ReadPosRankSum=-1.673;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGSNAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519000    GT:AD:DP:GQ:PL    0/1:21,17:38:99:553,0,602
8    43054553    rs1126058    T    C    1939.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_AMINO_ACID_CHANGE=Y300;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_43054531_43055698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGSNAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521576    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1973,150,0
8    43171251    rs11777955    G    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-726G23.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533569    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
8    43173495    rs71233816    C    CTA    791.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=35.3569;IndelType=I;MQ=54.78;MQ0=0;QD=52.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-726G23.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533569    GT:AD:DP:GQ:PL    1/1:4,10:15:42.14:833,42,0
8    43197645    rs11776934    T    C    103.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POTEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519951    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
8    47886113    rs1827125    T    C    908.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MAPK6PS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517873    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:941,69,0
8    48068638    rs60732982    G    GA    521.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=44.2353;IndelType=I;MQ=53.09;MQ0=0;QD=32.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1134I14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509729    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:564,48,0
8    48068797    rs4872992    T    C    2704.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-1134I14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509729    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2738,211,0
8    48069425    rs35921962    TAA    T    875.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=12;HaplotypeScore=194.2506;IndelType=D;MQ=58.6;MQ0=1;QD=23.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL10AP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479243    GT:AD:DP:GQ:PL    1/1:6,30:36:92.90:917,93,0
8    48069463    rs6984164    C    A    901.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=1.6;QD=34.67;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL10AP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479243    GT:AD:DP:GQ:PL    1/1:1,25:26:72.21:934,72,0
8    48320563    rs34569190    AT    A    839.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=1;HaplotypeScore=61.0147;IndelType=D;MQ=60.51;MQ0=0;QD=39.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297423    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:882,63,0
8    48687031    rs72646391    C    G    134.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=13.41;ReadPosRankSum=-0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521331    GT:AD:DP:GQ:PL    0/1:5,5:10:99:164,0,149
8    48802573    rs72647910    G    A    279.69    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=23;Dels=0.0;FS=4.216;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=2.016;QD=12.16;ReadPosRankSum=1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314191    GT:AD:DP:GQ:PL    0/1:13,10:23:99:310,0,401
8    48805816    rs11411516    A    AG    1420.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=76.7443;IndelType=I;MQ=59.96;MQ0=0;QD=43.05;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_8_48805817_48805947;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKDC;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000314191    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1463,99,0
8    48846519    rs1231202    T    C    5195.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.786;MQ=59.68;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535375    GT:AD:DP:GQ:PL    1/1:0,148:148:99:5196,391,0
8    48866788    rs1231203    T    G    358.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=35.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540819    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:391,30,0
8    48885436    rs762679    T    A    830.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_AMINO_ACID_CHANGE=L610M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_48885417_48885624;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429229    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:864,63,0
8    49642572    rs13276316    C    T    80.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=16.01;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262103    GT:AD:DP:GQ:PL    0/1:2,3:5:64.16:110,0,64
8    49643243    rs966703    A    G    127.84    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=7.99;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262103    GT:AD:DP:GQ:PL    0/1:11,5:16:99:158,0,403
8    49647435    rs1126259    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262103    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    49985188    rs3735973    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303202    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    49987910    rs6984804    G    A    1093.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303202    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1127,87,0
8    49987965    rs7005693    A    C    407.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.36;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303202    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:441,36,0
8    51315099    rs4367560    C    T    122.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276467    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
8    51363078    rs7817955    C    T    1535.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523085    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1568,114,0
8    51363430    rs12542191    A    T    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=6.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523085    GT:AD:DP:GQ:PL    1/1:0,6:6:6.02:70,6,0
8    51569293    rs2271204    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276467    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    51571370    rs1911831    G    A    259.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276467    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
8    51617048    rs35759139    CAG    C    743.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=91.752;IndelType=D;MQ=60.47;MQ0=0;QD=37.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276467    GT:AD:DP:GQ:PL    1/1:1,19:20:54.18:785,54,0
8    51617430    rs7003356    T    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276467    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    51664541    rs11429292    G    GT    2082.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.0;HRun=8;HaplotypeScore=150.4107;IndelType=I;MQ=61.98;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276467    GT:AD:DP:GQ:PL    1/1:4,62:66:99:2125,187,0
8    51664842    rs6473337    C    A    116.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276467    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
8    52232487    rs1052704    G    T    376.05    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=31;Dels=0.0;FS=1.455;HRun=1;HaplotypeScore=1.832;MQ=59.4;MQ0=0;MQRankSum=-0.764;QD=12.13;ReadPosRankSum=1.2;SNPEFF_AMINO_ACID_CHANGE=D1452E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52232139_52232582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:16,15:31:99:406,0,454
8    52233276    rs7827306    C    A    445.87    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.949;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.47;MQ0=0;MQRankSum=-3.084;QD=16.51;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:11,16:27:99:476,0,358
8    52233299    rs3217441    T    TAGG    1363.63    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=5.282;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=330.2388;IndelType=I;MQ=45.4;MQ0=0;MQRankSum=-4.461;QD=34.96;ReadPosRankSum=0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:19,20:39:99:1403,0,753
8    52233308    .    A    AAC    1057.08    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=5.406;DP=44;FS=0.0;HRun=0;HaplotypeScore=362.4677;IndelType=I;MQ=47.1;MQ0=0;MQRankSum=-4.191;QD=24.02;ReadPosRankSum=2.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:27,17:44:99:1096,0,835
8    52233408    rs7827446    C    T    1212.95    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.441;DB;DP=90;Dels=0.01;FS=0.797;HRun=1;HaplotypeScore=7.9511;MQ=54.4;MQ0=0;MQRankSum=-2.59;QD=13.33;ReadPosRankSum=-1.063;SNPEFF_AMINO_ACID_CHANGE=R1399K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52233344_52233457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:43,47:90:99:1243,0,1267
8    52252171    rs11778598    A    G    920.87    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.974;DB;DP=69;Dels=0.0;FS=2.521;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.215;QD=13.35;ReadPosRankSum=-1.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:35,34:69:99:951,0,1091
8    52252320    rs16916011    A    G    1119.73    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=91;Dels=0.0;FS=2.807;HRun=0;HaplotypeScore=0.5784;MQ=59.75;MQ0=0;MQRankSum=1.122;QD=12.3;ReadPosRankSum=0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:48,43:91:99:1150,0,1409
8    52252405    rs1437593    T    C    272.39    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.644;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.507;QD=8.79;ReadPosRankSum=0.994;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:19,12:31:99:302,0,628
8    52284560    rs117752382    A    T    844.32    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.235;DB;DP=69;Dels=0.0;FS=4.525;HRun=0;HaplotypeScore=2.3782;MQ=60.0;MQ0=0;MQRankSum=0.62;QD=12.24;ReadPosRankSum=0.67;SNPEFF_AMINO_ACID_CHANGE=C1258*;SNPEFF_CODON_CHANGE=tgT/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_8_52284433_52284641;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:36,32:69:99:874,0,1087
8    52284654    rs35149717    C    CA    128.75    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=11;FS=0.0;HRun=10;HaplotypeScore=35.6392;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=11.7;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:4,7:11:25.23:168,0,25
8    52287041    rs2977003    C    T    329.87    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.972;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.571;QD=12.69;ReadPosRankSum=1.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:15,11:26:99:360,0,552
8    52321243    rs2977020    T    C    405.48    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=25.34;ReadPosRankSum=1.826;SNPEFF_AMINO_ACID_CHANGE=M981V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52320627_52322121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:2,14:16:38.94:435,0,39
8    52325879    rs1560511    T    G    274.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.111;QD=15.23;ReadPosRankSum=0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:8,10:18:99:304,0,241
8    52336041    rs2060107    G    C    156.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:190,15,0
8    52366200    rs6473599    G    A    1707.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=34.14;SNPEFF_AMINO_ACID_CHANGE=H376;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52366079_52366345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1740,126,0
8    52366217    rs6473600    G    A    725.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.593;DB;DP=46;Dels=0.0;FS=2.55;HRun=1;HaplotypeScore=1.7333;MQ=59.09;MQ0=0;MQRankSum=2.351;QD=15.76;ReadPosRankSum=-1.055;SNPEFF_AMINO_ACID_CHANGE=L371;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52366079_52366345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:23,23:46:99:755,0,745
8    52366300    rs7833909    A    G    625.02    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.513;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.467;QD=13.59;ReadPosRankSum=0.102;SNPEFF_AMINO_ACID_CHANGE=I343T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52366079_52366345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:24,22:46:99:655,0,802
8    52370326    rs28719126    T    C    467.91    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.538;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.651;QD=18.72;ReadPosRankSum=-0.878;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:9,16:25:99:498,0,291
8    52370328    rs28565404    T    C    401.42    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.835;QD=16.73;ReadPosRankSum=-0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:9,15:24:99:431,0,279
8    52384670    rs7839439    A    G    298.94    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.857;QD=15.73;ReadPosRankSum=1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:9,10:19:99:329,0,306
8    52384884    rs10958268    G    A    716.12    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.837;DB;DP=38;Dels=0.0;FS=1.668;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=0.239;QD=18.85;ReadPosRankSum=-1.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:15,23:38:99:746,0,408
8    52387486    rs6997795    A    C    93.08    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:5,4:9:99:123,0,184
8    52412226    rs755311    G    T    861.42    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.426;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9623;MQ=60.0;MQ0=0;MQRankSum=-0.256;QD=16.57;ReadPosRankSum=0.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:23,29:52:99:891,0,673
8    52567361    rs17277222    A    T    315.44    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.531;QD=16.6;ReadPosRankSum=-0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PXDNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356297    GT:AD:DP:GQ:PL    0/1:9,10:19:99:345,0,299
8    52732790    rs35705942    A    AT    411.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=8;HaplotypeScore=52.105;IndelType=I;MQ=52.15;MQ0=0;QD=17.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC090186.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415643    GT:AD:DP:GQ:PL    1/1:8,11:17:47.30:453,47,0
8    52732893    .    T    TC    57.52    QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DP=46;FS=8.041;HRun=0;HaplotypeScore=121.8461;IndelType=I;MQ=51.53;MQ0=3;MQRankSum=-3.635;QD=1.01;ReadPosRankSum=0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC090186.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415643    GT:AD:DP:GQ:PL    0/1:43,14:46:96.55:97,0,1583
8    52733003    rs79195845    C    T    49.68    QDFilter2    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=81;Dels=0.0;FS=23.18;HRun=1;HaplotypeScore=3.8278;MQ=48.74;MQ0=5;MQRankSum=-6.264;QD=0.61;ReadPosRankSum=-2.061;SNPEFF_AMINO_ACID_CHANGE=E252K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:52,28:81:79.67:80,0,1601
8    52733016    rs117828481    T    C    51.25    QDFilter2    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.704;DB;DP=68;Dels=0.0;FS=20.721;HRun=0;HaplotypeScore=1.8835;MQ=50.29;MQ0=5;MQRankSum=-6.043;QD=0.75;ReadPosRankSum=-0.363;SNPEFF_AMINO_ACID_CHANGE=A247;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:46,22:68:81.25:81,0,1528
8    52733023    rs114725410    T    C    34.50    QDFilter2    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.97;DB;DP=63;Dels=0.0;FS=18.965;HRun=0;HaplotypeScore=9.3586;MQ=50.49;MQ0=4;MQRankSum=-5.813;QD=0.55;ReadPosRankSum=-0.462;SNPEFF_AMINO_ACID_CHANGE=N245S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:43,20:63:64.49:64,0,1456
8    52733050    rs12335014    T    A    651.32    HaplotypeScoreFilter13    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.534;DB;DP=70;Dels=0.0;FS=5.9;HRun=0;HaplotypeScore=36.3669;MQ=48.26;MQ0=6;MQRankSum=3.753;QD=9.17;ReadPosRankSum=-2.099;SNPEFF_AMINO_ACID_CHANGE=N236I;SNPEFF_CODON_CHANGE=aAc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:48,22:70:99:681,0,863
8    52733055    rs117334240    C    T    58.26    HaplotypeScoreFilter13;QDFilter2    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.229;DB;DP=73;Dels=0.0;FS=21.949;HRun=1;HaplotypeScore=40.5671;MQ=47.16;MQ0=7;MQRankSum=-6.564;QD=0.8;ReadPosRankSum=-0.977;SNPEFF_AMINO_ACID_CHANGE=E234;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:43,29:73:88.25:88,0,1397
8    52733076    rs77409139    T    C    832.66    HaplotypeScoreFilter13    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.135;DB;DP=106;Dels=0.0;FS=24.057;HRun=1;HaplotypeScore=20.7754;MQ=44.11;MQ0=12;MQRankSum=-6.767;QD=7.86;ReadPosRankSum=-3.138;SNPEFF_AMINO_ACID_CHANGE=E227;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:43,63:106:99:863,0,1412
8    52733079    rs75865149    A    C    103.89    HaplotypeScoreFilter13;QDFilter2    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=2.455;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=22.7984;MQ=43.76;MQ0=12;MQRankSum=-2.756;QD=0.94;ReadPosRankSum=-3.004;SNPEFF_AMINO_ACID_CHANGE=S226R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:83,27:110:99:134,0,2198
8    52733128    rs62506083    T    G    2437.30    PASS    AB=0.258;AC=1;AF=0.50;AN=2;BaseQRankSum=0.309;DB;DP=178;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.799;MQ=41.69;MQ0=21;MQRankSum=-6.858;QD=13.69;ReadPosRankSum=3.068;SNPEFF_AMINO_ACID_CHANGE=N210T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:46,132:178:99:2467,0,1186
8    52733148    rs76104220    C    T    560.99    HaplotypeScoreFilter13;MQFilter40    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=181;Dels=0.0;FS=3.929;HRun=3;HaplotypeScore=14.624;MQ=39.51;MQ0=23;MQRankSum=-1.615;QD=3.1;ReadPosRankSum=-1.189;SNPEFF_AMINO_ACID_CHANGE=K203;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:134,42:181:99:591,0,2959
8    52733228    rs73592211    G    A    232.04    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=71;Dels=0.0;FS=10.152;HRun=0;HaplotypeScore=5.7815;MQ=43.31;MQ0=7;MQRankSum=-1.915;QD=3.27;ReadPosRankSum=0.116;SNPEFF_AMINO_ACID_CHANGE=R177C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:53,18:71:99:262,0,1383
8    52733231    rs75748152    G    A    132.49    QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=70;Dels=0.0;FS=7.603;HRun=2;HaplotypeScore=5.7815;MQ=44.23;MQ0=7;MQRankSum=-1.917;QD=1.89;ReadPosRankSum=0.219;SNPEFF_AMINO_ACID_CHANGE=R176*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_8_52730140_52733278;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000544451    GT:AD:DP:GQ:PL    0/1:57,13:70:99:162,0,1318
8    52733340    rs35006940    A    AT    175.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=7;HaplotypeScore=20.6304;IndelType=I;MQ=58.11;MQ0=0;QD=17.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC090186.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415643    GT:AD:DP:GQ:PL    1/1:4,6:10:18.06:217,18,0
8    52744336    rs4518654    C    T    39.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360540    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
8    52745943    rs36027139    CAAAT    C    402.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=68.8576;IndelType=D;MQ=47.03;MQ0=0;QD=44.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360540    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:444,24,0
8    52746153    rs9298462    C    T    1011.32    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.618;DB;DP=83;Dels=0.0;FS=5.62;HRun=0;HaplotypeScore=0.9996;MQ=59.16;MQ0=0;MQRankSum=-0.307;QD=12.18;ReadPosRankSum=0.985;SNPEFF_AMINO_ACID_CHANGE=V169;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_52746078_52746249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360540    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1041,0,1363
8    53092553    rs7823894    C    G    609.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521549    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:643,48,0
8    53452359    rs34909407    T    TA    237.09    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.643;DB;DP=29;FS=9.81;HRun=13;HaplotypeScore=148.612;IndelType=I;MQ=57.46;MQ0=0;MQRankSum=-0.527;QD=8.18;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM150A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358543    GT:AD:DP:GQ:PL    0/1:13,14:29:99:276,0,123
8    53536476    .    T    TCA    474.89    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.946;DP=33;FS=0.0;HRun=0;HaplotypeScore=101.9492;IndelType=I;MQ=59.82;MQ0=0;MQRankSum=-0.403;QD=14.39;ReadPosRankSum=0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1CC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025008    GT:AD:DP:GQ:PL    0/1:20,13:33:99:514,0,279
8    53570529    rs12708142    C    A    2330.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1CC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025008    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2363,175,0
8    53573288    rs33955860    GA    G    361.07    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.438;DB;DP=35;FS=3.59;HRun=4;HaplotypeScore=86.0815;IndelType=D;MQ=60.62;MQ0=0;MQRankSum=0.817;QD=10.32;ReadPosRankSum=-1.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1CC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025008    GT:AD:DP:GQ:PL    0/1:21,14:35:99:400,0,655
8    53586706    rs17337252    A    G    1617.28    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.332;DB;DP=115;Dels=0.0;FS=0.698;HRun=0;HaplotypeScore=0.5784;MQ=59.4;MQ0=0;MQRankSum=1.265;QD=14.06;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=M234T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_53586405_53586834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1CC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000025008    GT:AD:DP:GQ:PL    0/1:51,64:115:99:1647,0,1690
8    53852871    rs33977775    A    T    341.09    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.515;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6155;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=11.37;ReadPosRankSum=0.021;SNPEFF_AMINO_ACID_CHANGE=Y135F;SNPEFF_CODON_CHANGE=tAc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_53850991_53853677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPBWR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331251    GT:AD:DP:GQ:PL    0/1:16,14:30:99:371,0,425
8    54141824    rs963549    C    T    797.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.778;DB;DP=57;Dels=0.0;FS=2.619;HRun=0;HaplotypeScore=2.9563;MQ=60.0;MQ0=0;MQRankSum=-0.205;QD=13.99;ReadPosRankSum=-0.762;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265572    GT:AD:DP:GQ:PL    0/1:28,28:57:99:827,0,801
8    54142154    rs16918875    G    A    554.94    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.153;DB;DP=32;Dels=0.0;FS=3.151;HRun=2;HaplotypeScore=0.9665;MQ=59.28;MQ0=0;MQRankSum=0.998;QD=17.34;ReadPosRankSum=0.384;SNPEFF_AMINO_ACID_CHANGE=V193;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_54141763_54142389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524278    GT:AD:DP:GQ:PL    0/1:13,19:32:99:585,0,408
8    54142157    rs702764    T    C    517.74    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.957;DB;DP=32;Dels=0.0;FS=1.497;HRun=1;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=0.882;QD=16.18;ReadPosRankSum=0.153;SNPEFF_AMINO_ACID_CHANGE=A192;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_54141763_54142389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524278    GT:AD:DP:GQ:PL    0/1:13,19:32:99:548,0,433
8    54147242    rs16918900    C    T    233.04    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.444;QD=11.1;ReadPosRankSum=0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265572    GT:AD:DP:GQ:PL    0/1:11,10:21:99:263,0,373
8    54745538    rs6991513    C    G    2671.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355221    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2704,199,0
8    54858981    rs17301329    T    A    540.22    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.226;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=15.89;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276500    GT:AD:DP:GQ:PL    0/1:16,18:34:99:570,0,548
8    54859029    rs16919699    T    C    1189.12    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=5.11;DB;DP=79;Dels=0.0;FS=4.493;HRun=0;HaplotypeScore=1.894;MQ=59.65;MQ0=0;MQRankSum=1.751;QD=15.05;ReadPosRankSum=0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276500    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1219,0,1143
8    54866491    rs6981243    C    A    275.06    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.488;QD=17.19;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276500    GT:AD:DP:GQ:PL    0/1:6,10:16:99:305,0,198
8    55539395    rs2293869    A    T    2775.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_AMINO_ACID_CHANGE=N985Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_55537230_55543394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000220676    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2809,217,0
8    55542540    rs61739567    G    A    2040.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7077;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_AMINO_ACID_CHANGE=C2033Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_55537230_55543394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000220676    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2073,150,0
8    56270470    rs2622565    G    A    131.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=13.14;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XKR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327381    GT:AD:DP:GQ:PL    0/1:5,5:10:99:161,0,182
8    56686035    rs2044812    C    T    209.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_56685701_56686278;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260129    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
8    56686224    rs1818    T    C    410.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=I16T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_56685701_56686278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260129    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:443,33,0
8    56702559    rs10808903    A    C    182.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.493;QD=14.03;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260129    GT:AD:DP:GQ:PL    0/1:6,7:13:99:212,0,213
8    56705438    rs73603138    G    A    181.30    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=16.48;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260129    GT:AD:DP:GQ:PL    0/1:5,6:11:99:211,0,177
8    56711449    rs78872630    C    T    274.92    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=22;Dels=0.0;FS=5.78;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.134;QD=12.5;ReadPosRankSum=-1.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260129    GT:AD:DP:GQ:PL    0/1:13,9:22:99:305,0,446
8    56714912    rs181347084    G    A    240.22    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.879;DB;DP=27;Dels=0.0;FS=4.467;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.122;QD=8.9;ReadPosRankSum=-2.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519494    GT:AD:DP:GQ:PL    0/1:15,12:27:99:270,0,501
8    56911861    rs2175487    A    G    65.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=10.98;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420292    GT:AD:DP:GQ:PL    0/1:2,4:6:67.19:96,0,67
8    56986648    rs11537559    G    T    93.51    QDFilter2    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.959;DB;DP=60;Dels=0.0;FS=57.602;HRun=2;HaplotypeScore=2.6607;MQ=50.42;MQ0=0;MQRankSum=-2.085;QD=1.56;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=T25K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_56986619_56986718;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000009589    GT:AD:DP:GQ:PL    0/1:37,23:60:99:123,0,1218
8    57125270    rs6474051    T    C    223.43    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=27.93;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303759    GT:AD:DP:GQ:PL    0/1:1,7:8:15.93:253,0,16
8    57358251    rs3808634    C    T    58.10    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=7.26;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=G88S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_57357804_57358515;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PENK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518770    GT:AD:DP:GQ:PL    0/1:5,3:8:88.10:88,0,180
8    57358563    rs3840716    CG    C    189.04    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=23.9769;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.747;QD=23.63;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PENK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521153    GT:AD:DP:GQ:PL    0/1:1,7:8:17.97:228,0,18
8    59329438    rs13277646    A    G    529.90    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.72;DB;DP=46;Dels=0.0;FS=2.689;HRun=1;HaplotypeScore=1.9468;MQ=60.0;MQ0=0;MQRankSum=1.059;QD=11.52;ReadPosRankSum=-0.551;SNPEFF_AMINO_ACID_CHANGE=E38;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_59329409_59329512;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399598    GT:AD:DP:GQ:PL    0/1:25,21:46:99:560,0,810
8    59345945    rs12543860    G    A    210.93    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.09;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399598    GT:AD:DP:GQ:PL    0/1:3,7:10:93.69:241,0,94
8    59410632    rs1457042    C    T    55.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=7.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301645    GT:AD:DP:GQ:PL    0/1:4,3:7:85.15:85,0,148
8    59411042    rs2162459    G    A    880.26    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=62;Dels=0.0;FS=2.276;HRun=2;HaplotypeScore=0.734;MQ=59.7;MQ0=0;MQRankSum=-1.58;QD=14.2;ReadPosRankSum=-1.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301645    GT:AD:DP:GQ:PL    0/1:30,32:62:99:910,0,1003
8    59412924    rs3808607    G    T    35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=17.5;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301645    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
8    59484899    rs7827910    T    A    1090.29    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.37;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7202;MQ=59.44;MQ0=0;MQRankSum=0.135;QD=13.3;ReadPosRankSum=-0.997;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SDCBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522243    GT:AD:DP:GQ:PL    0/1:40,42:82:99:1120,0,1265
8    59494089    rs28656336    G    T    37.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.44;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000038176    GT:AD:DP:GQ:PL    0/1:3,2:5:67.19:67,0,107
8    59498190    rs12677290    G    A    602.09    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.019;DB;DP=45;Dels=0.0;FS=9.299;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.284;QD=13.38;ReadPosRankSum=1.469;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517612    GT:AD:DP:GQ:PL    0/1:26,19:45:99:632,0,776
8    59498614    rs6995115    A    G    646.74    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.84;DB;DP=51;Dels=0.0;FS=6.221;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.028;QD=12.68;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517612    GT:AD:DP:GQ:PL    0/1:27,24:51:99:677,0,773
8    59498685    rs12679938    T    G    422.54    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.432;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.23;MQ0=0;MQRankSum=1.642;QD=14.08;ReadPosRankSum=0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517612    GT:AD:DP:GQ:PL    0/1:16,14:30:99:453,0,546
8    59499237    rs3816846    G    A    482.41    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.51;DB;DP=30;Dels=0.0;FS=3.163;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.68;QD=16.08;ReadPosRankSum=0.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519166    GT:AD:DP:GQ:PL    0/1:14,16:30:99:512,0,466
8    59500926    rs11774558    A    T    532.25    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=79;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.0313;MQ=48.02;MQ0=1;MQRankSum=-3.309;QD=6.74;ReadPosRankSum=3.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519166    GT:AD:DP:GQ:PL    0/1:55,24:79:99:562,0,1501
8    59501025    rs11785141    T    C    352.02    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.23;DB;DP=124;Dels=0.0;FS=37.814;HRun=0;HaplotypeScore=2.6124;MQ=43.98;MQ0=5;MQRankSum=-5.552;QD=2.84;ReadPosRankSum=-0.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519166    GT:AD:DP:GQ:PL    0/1:94,30:124:99:382,0,2792
8    59501283    rs146520291    C    A    702.71    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.244;DB;DP=118;Dels=0.0;FS=11.336;HRun=0;HaplotypeScore=1.7825;MQ=42.58;MQ0=9;MQRankSum=-2.375;QD=5.96;ReadPosRankSum=-1.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519166    GT:AD:DP:GQ:PL    0/1:70,48:118:99:733,0,1720
8    59501863    rs11782455    G    A    30.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519166    GT:AD:DP:GQ:PL    0/1:1,2:3:27.96:61,0,28
8    59508076    rs16923588    A    G    319.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=2.306;QD=15.97;ReadPosRankSum=-0.945;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519227    GT:AD:DP:GQ:PL    0/1:10,10:20:99:349,0,293
8    59508244    rs55965030    CT    C    806.20    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=3.557;DB;DP=41;FS=1.979;HRun=1;HaplotypeScore=106.1237;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=-0.192;QD=19.66;ReadPosRankSum=1.559;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519227    GT:AD:DP:GQ:PL    0/1:18,23:41:99:845,0,696
8    59511756    rs10111180    C    T    651.20    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.108;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.874;MQ=59.38;MQ0=0;MQRankSum=2.513;QD=8.8;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519858    GT:AD:DP:GQ:PL    0/1:45,29:74:99:681,0,1350
8    59512334    rs2680903    G    A    2478.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=D476;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_59512309_59512429;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000038176    GT:AD:DP:GQ:PL    1/1:0,72:73:99:2512,187,0
8    59514105    rs33942423    G    GAAA    402.83    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=23;FS=0.0;HRun=14;HaplotypeScore=112.9637;IndelType=I;MQ=56.82;MQ0=0;MQRankSum=-0.566;QD=17.51;ReadPosRankSum=-2.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000038176    GT:AD:DP:GQ:PL    0/1:12,9:23:92.39:442,0,92
8    59515756    rs2255834    G    A    1152.44    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=4.891;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.42;MQ0=0;MQRankSum=-0.535;QD=14.59;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000038176    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1182,0,937
8    59535622    rs2634533    G    C    129.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518159    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
8    59535859    rs112550046    A    ACG    2547.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DB;DP=58;FS=0.0;HRun=0;HaplotypeScore=585.4922;IndelType=I;MQ=51.22;MQ0=0;MQRankSum=-0.021;QD=43.93;ReadPosRankSum=2.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518159    GT:AD:DP:GQ:PL    1/1:3,54:58:99:2590,164,0
8    59544252    rs17206746    A    T    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=11.69;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000038176    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:65,0,33
8    59547804    rs10113830    C    A    1853.88    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.339;DB;DP=110;Dels=0.0;FS=2.519;HRun=1;HaplotypeScore=0.5784;MQ=59.79;MQ0=0;MQRankSum=-0.725;QD=16.85;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000038176    GT:AD:DP:GQ:PL    0/1:51,59:110:99:1884,0,1593
8    59555731    rs1387222    T    A    179.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.276;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.299;QD=12.84;ReadPosRankSum=-1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000038176    GT:AD:DP:GQ:PL    0/1:7,7:14:99:210,0,241
8    59720604    rs2726600    G    A    437.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361421    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:470,36,0
8    59739333    rs4737522    C    T    415.30    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=27;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=0.9998;MQ=59.31;MQ0=0;MQRankSum=-0.854;QD=15.38;ReadPosRankSum=-0.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361421    GT:AD:DP:GQ:PL    0/1:12,15:27:99:445,0,407
8    59764368    rs67834206    CAATA    C    288.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=101.1183;IndelType=D;MQ=60.0;MQ0=0;QD=12.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361421    GT:AD:DP:GQ:PL    1/1:16,7:23:21.07:331,21,0
8    59851853    rs79446072    A    G    1111.86    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.411;DB;DP=70;Dels=0.0;FS=2.017;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.218;QD=15.88;ReadPosRankSum=1.763;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361421    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1142,0,1064
8    60882999    rs493713    C    T    747.30    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.963;DB;DP=56;Dels=0.0;FS=9.587;HRun=1;HaplotypeScore=1.7791;MQ=55.13;MQ0=0;MQRankSum=0.403;QD=13.34;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,26:56:99:777,0,870
8    61139280    rs12549573    C    T    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
8    61139319    rs12549574    C    T    36.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=7.21;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    0/1:3,2:5:66.03:66,0,103
8    61139663    rs4738799    C    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
8    61145146    rs11784742    A    G    33.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    1/1:0,3:3:6:65,6,0
8    61178574    rs7464181    T    C    280.45    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.892;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=0.713;QD=12.19;ReadPosRankSum=0.217;SNPEFF_AMINO_ACID_CHANGE=E109;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_61178484_61178608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    0/1:13,10:23:99:310,0,431
8    61178676    rs34561009    CT    C    154.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=11;HaplotypeScore=44.5767;IndelType=D;MQ=57.75;MQ0=0;QD=14.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    1/1:2,9:11:23.95:196,24,0
8    61192534    rs28429093    C    T    42.22    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    0/1:1,3:4:34.29:72,0,34
8    61193453    rs7002846    A    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=13.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
8    61193570    rs74792169    C    T    156.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=1.067;QD=19.51;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    0/1:2,6:8:54.16:186,0,54
8    61193588    rs10086200    C    T    41.68    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=13;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=57.84;MQ0=0;MQRankSum=0.423;QD=3.21;ReadPosRankSum=0.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317995    GT:AD:DP:GQ:PL    0/1:10,3:13:71.68:72,0,350
8    61193760    rs10101374    T    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524872    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
8    61604768    rs35236967    GT    G    368.63    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=45.6001;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.906;QD=20.48;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:7,11:18:99:408,0,282
8    61655690    rs7836586    G    A    977.40    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.631;DB;DP=72;Dels=0.0;FS=2.639;HRun=1;HaplotypeScore=1.7046;MQ=59.36;MQ0=0;MQRankSum=0.301;QD=13.58;ReadPosRankSum=1.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526846    GT:AD:DP:GQ:PL    0/1:39,33:72:99:1007,0,1202
8    61693412    rs6471901    C    A    51.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.96;MQ0=0;MQRankSum=-0.573;QD=5.67;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:6,3:9:81.01:81,0,225
8    61693456    rs142885557    TGAGTATA    T    592.01    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.995;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=168.0325;IndelType=D;MQ=52.29;MQ0=0;MQRankSum=-3.16;QD=24.67;ReadPosRankSum=2.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:15,9:24:99:631,0,1744
8    61707725    rs4540437    G    A    1442.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.129;DB;DP=90;Dels=0.0;FS=1.059;HRun=0;HaplotypeScore=2.9919;MQ=60.0;MQ0=0;MQRankSum=-1.937;QD=16.02;ReadPosRankSum=-0.621;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:45,45:90:99:1472,0,1409
8    61713126    rs112021443    A    ATGGACT    2078.54    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.084;DB;DP=66;FS=12.302;HRun=0;HaplotypeScore=332.7034;IndelType=I;MQ=53.58;MQ0=0;MQRankSum=-3.788;QD=31.49;ReadPosRankSum=-0.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527900    GT:AD:DP:GQ:PL    0/1:44,20:66:99:2118,0,2190
8    61713231    rs3890803    C    A    210.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.889;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.05;MQ0=0;MQRankSum=-1.317;QD=8.79;ReadPosRankSum=0.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527900    GT:AD:DP:GQ:PL    0/1:16,8:24:99:241,0,509
8    61714245    rs10448027    A    G    97.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.0;QD=16.24;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527900    GT:AD:DP:GQ:PL    0/1:2,4:6:63.52:127,0,64
8    61732521    rs6471902    A    G    454.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.525;DB;DP=25;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=1.6553;MQ=59.07;MQ0=0;MQRankSum=0.194;QD=18.19;ReadPosRankSum=1.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:10,15:25:99:485,0,297
8    61734295    rs4509369    A    G    422.92    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.044;DB;DP=38;Dels=0.0;FS=4.337;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.074;QD=11.13;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:24,14:38:99:453,0,855
8    61748415    rs6471905    G    A    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
8    61748893    rs7005873    C    A    271.25    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.144;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.367;QD=14.28;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:9,10:19:99:301,0,312
8    61750860    rs7844902    A    G    1011.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=56;Dels=0.0;FS=8.661;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.026;QD=18.07;ReadPosRankSum=0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:21,35:56:99:1042,0,708
8    61764076    rs4342642    A    G    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307121    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
8    61773285    rs10094382    C    T    197.32    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.0;QD=15.18;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529472    GT:AD:DP:GQ:PL    0/1:5,8:13:99:227,0,166
8    61851466    rs3748648    T    C    2958.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.73;MQ0=0;QD=32.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC022182.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526936    GT:AD:DP:GQ:PL    1/1:1,89:90:99:2991,232,0
8    61851780    rs4737569    T    G    1219.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.44;MQ0=0;QD=34.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC022182.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526936    GT:AD:DP:GQ:PL    1/1:0,35:35:93.28:1252,93,0
8    61851852    rs112948730    C    CT    1472.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=4;HaplotypeScore=119.5241;IndelType=I;MQ=58.41;MQ0=0;QD=38.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC022182.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526936    GT:AD:DP:GQ:PL    1/1:1,37:38:99:1514,111,0
8    62003453    rs1367972    A    G    545.11    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=41;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.612;QD=13.3;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522621    GT:AD:DP:GQ:PL    0/1:22,19:41:99:575,0,687
8    62003547    rs35220668    G    GC    106.15    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=14;FS=0.0;HRun=7;HaplotypeScore=43.4775;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=7.58;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522621    GT:AD:DP:GQ:PL    0/1:9,5:14:99:145,0,167
8    62366544    rs2279572    T    C    721.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325897    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:754,54,0
8    62411925    rs78360836    G    GAAAT    623.75    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.239;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=105.769;IndelType=I;MQ=56.44;MQ0=0;MQRankSum=-0.979;QD=23.1;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    0/1:18,9:27:99:663,0,836
8    62416074    rs7005617    G    A    745.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLVS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325897    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:778,57,0
8    62438530    rs4738904    A    G    3071.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.76;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3105,232,0
8    62460886    rs10113272    A    G    76.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.21;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    0/1:2,3:5:64.91:106,0,65
8    62460894    rs16927479    G    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:74,0,26
8    62465580    rs4289805    T    C    3406.63    PASS    AB=0.454;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=219;Dels=0.0;FS=3.367;HRun=0;HaplotypeScore=4.1499;MQ=59.68;MQ0=0;MQRankSum=0.968;QD=15.56;ReadPosRankSum=0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    0/1:99,119:219:99:3407,0,2786
8    62465795    rs4291265    T    C    383.74    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9782;MQ=58.6;MQ0=0;MQRankSum=0.209;QD=12.79;ReadPosRankSum=0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    0/1:17,13:30:99:414,0,536
8    62465814    rs4379440    G    T    209.90    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9993;MQ=57.77;MQ0=0;MQRankSum=0.537;QD=11.05;ReadPosRankSum=-1.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    0/1:11,8:19:99:240,0,359
8    62475097    rs3802288    T    A    144.12    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=16.01;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524173    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,127
8    62475160    rs3802287    A    G    353.04    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.71;QD=17.65;ReadPosRankSum=0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524173    GT:AD:DP:GQ:PL    0/1:6,14:20:99:383,0,195
8    62475276    rs3802286    C    T    1410.39    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.117;DB;DP=93;Dels=0.0;FS=7.472;HRun=0;HaplotypeScore=1.6498;MQ=59.75;MQ0=0;MQRankSum=0.302;QD=15.17;ReadPosRankSum=0.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524173    GT:AD:DP:GQ:PL    0/1:43,50:93:99:1440,0,1282
8    62475518    rs3824269    G    C    57.58    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=4.8;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524173    GT:AD:DP:GQ:PL    0/1:9,3:12:87.58:88,0,334
8    62479925    rs61226013    T    A    818.96    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=50;Dels=0.0;FS=1.486;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=16.38;ReadPosRankSum=1.499;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    0/1:23,27:50:99:849,0,694
8    62479934    rs10090754    C    T    561.20    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.581;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.648;QD=12.2;ReadPosRankSum=-0.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379454    GT:AD:DP:GQ:PL    0/1:26,20:46:99:591,0,913
8    62489214    rs55767984    T    A    61    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=7.63;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522349    GT:AD:DP:GQ:PL    0/1:5,3:8:90.99:91,0,182
8    62489334    rs16927574    C    T    622.12    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=47;Dels=0.0;FS=4.201;HRun=0;HaplotypeScore=1.5449;MQ=59.01;MQ0=0;MQRankSum=-1.5;QD=13.24;ReadPosRankSum=1.032;SNPEFF_AMINO_ACID_CHANGE=A135;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_62489331_62489417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522349    GT:AD:DP:GQ:PL    0/1:24,23:47:99:652,0,668
8    62490873    rs28639609    A    G    121.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.28;MQ0=0;MQRankSum=-3.419;QD=6.73;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523897    GT:AD:DP:GQ:PL    0/1:12,6:18:99:151,0,355
8    62490931    rs28451709    A    C    249.86    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=22;Dels=0.0;FS=3.067;HRun=0;HaplotypeScore=0.0;MQ=52.45;MQ0=0;MQRankSum=-2.204;QD=11.36;ReadPosRankSum=1.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523897    GT:AD:DP:GQ:PL    0/1:13,9:22:99:280,0,461
8    62490978    rs16922684    T    C    387.08    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=35;Dels=0.0;FS=1.773;HRun=0;HaplotypeScore=0.7887;MQ=53.02;MQ0=0;MQRankSum=-2.549;QD=11.06;ReadPosRankSum=-2.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523897    GT:AD:DP:GQ:PL    0/1:19,16:35:99:417,0,597
8    62491095    rs9694936    C    T    540.80    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.158;DB;DP=71;Dels=0.0;FS=12.118;HRun=0;HaplotypeScore=2.9581;MQ=43.93;MQ0=7;MQRankSum=-6.715;QD=7.62;ReadPosRankSum=-0.483;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523897    GT:AD:DP:GQ:PL    0/1:36,34:71:99:571,0,1201
8    62491107    rs7832307    G    A    597.31    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=4.097;DB;DP=82;Dels=0.0;FS=7.016;HRun=0;HaplotypeScore=0.9983;MQ=45.59;MQ0=7;MQRankSum=-7.242;QD=7.28;ReadPosRankSum=-0.329;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523897    GT:AD:DP:GQ:PL    0/1:44,38:82:99:627,0,1289
8    62491170    rs7816003    T    C    1132.60    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=127;Dels=0.0;FS=20.788;HRun=0;HaplotypeScore=3.7239;MQ=44.59;MQ0=10;MQRankSum=-8.471;QD=8.92;ReadPosRankSum=1.029;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523897    GT:AD:DP:GQ:PL    0/1:66,61:127:99:1163,0,1966
8    62538944    rs78469859    T    A    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356457    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
8    62545288    rs2882462    C    T    991.57    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.904;DB;DP=75;Dels=0.0;FS=5.739;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.153;QD=13.22;ReadPosRankSum=0.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519264    GT:AD:DP:GQ:PL    0/1:42,33:75:99:1022,0,1213
8    62550936    rs998427    A    C    327.81    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.131;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.76;MQ0=0;MQRankSum=-0.075;QD=6.69;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356457    GT:AD:DP:GQ:PL    0/1:28,21:49:99:358,0,766
8    62563764    rs7016141    A    G    342.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.766;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.705;QD=21.4;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356457    GT:AD:DP:GQ:PL    0/1:6,10:16:99:372,0,151
8    62593664    rs62505969    T    G    449.93    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.222;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.603;QD=14.51;ReadPosRankSum=0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522036    GT:AD:DP:GQ:PL    0/1:17,14:31:99:480,0,535
8    62595068    rs3750278    C    T    206.10    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.371;DB;DP=31;Dels=0.0;FS=4.212;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=6.65;ReadPosRankSum=-1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522036    GT:AD:DP:GQ:PL    0/1:22,9:31:99:236,0,782
8    62626962    rs3829051    C    T    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_62626828_62627155;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356457    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    62627004    rs3750279    A    G    41.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.63;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_62626828_62627155;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356457    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
8    63161612    rs2272013    C    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.23;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519049    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
8    63491916    rs35489938    G    A    105.65    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=11.74;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328472    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,174
8    63502434    rs72423486    TTGTGTGTGTGTGTG    T    761.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=175.9279;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=-1.666;QD=54.41;ReadPosRankSum=1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328472    GT:AD:DP:GQ:PL    0/1:7,7:14:99:801,0,378
8    63659367    rs975688    T    C    117.92    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.381;QD=9.07;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328472    GT:AD:DP:GQ:PL    0/1:8,5:13:99:148,0,285
8    63659610    rs1319275    G    A    1180.56    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=77;Dels=0.0;FS=0.869;HRun=0;HaplotypeScore=1.5317;MQ=59.76;MQ0=0;MQRankSum=0.016;QD=15.33;ReadPosRankSum=1.586;SNPEFF_AMINO_ACID_CHANGE=T131;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_63659491_63659688;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328472    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1211,0,987
8    63659635    rs4739003    G    A    946.31    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=1.786;DB;DP=74;Dels=0.0;FS=6.814;HRun=0;HaplotypeScore=0.9867;MQ=59.75;MQ0=0;MQRankSum=0.749;QD=12.79;ReadPosRankSum=0.867;SNPEFF_AMINO_ACID_CHANGE=V140I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_63659491_63659688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328472    GT:AD:DP:GQ:PL    0/1:41,32:74:99:976,0,1201
8    63659754    rs16929506    T    C    316.52    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=26;Dels=0.0;FS=2.551;HRun=1;HaplotypeScore=0.0;MQ=60.42;MQ0=0;MQRankSum=-0.882;QD=12.17;ReadPosRankSum=-0.052;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524201    GT:AD:DP:GQ:PL    0/1:15,11:26:99:347,0,492
8    63659801    .    CAG    C    249.60    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DP=11;FS=0.0;HRun=0;HaplotypeScore=55.0148;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=1.398;QD=22.69;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524201    GT:AD:DP:GQ:PL    0/1:4,7:11:99:289,0,199
8    63845974    rs139655252    AAATAAG    A    554.46    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=16;FS=8.451;HRun=0;HaplotypeScore=102.1934;IndelType=D;MQ=45.26;MQ0=0;MQRankSum=-3.241;QD=34.65;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NKAIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328472    GT:AD:DP:GQ:PL    0/1:7,9:16:99:593,0,575
8    63942478    rs11786957    C    T    114.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523788    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:147,12,0
8    63948134    rs6998383    A    G    243.31    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.179;DB;DP=25;Dels=0.0;FS=4.075;HRun=1;HaplotypeScore=0.0;MQ=57.92;MQ0=0;MQRankSum=0.835;QD=9.73;ReadPosRankSum=0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260118    GT:AD:DP:GQ:PL    0/1:16,9:25:99:273,0,503
8    63976677    rs4606052    C    T    151.22    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=18.9;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260116    GT:AD:DP:GQ:PL    0/1:3,5:8:99:181,0,102
8    63976754    rs4501570    A    G    125.17    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=6.95;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260116    GT:AD:DP:GQ:PL    0/1:10,8:18:99:155,0,333
8    63978658    rs5891887    TA    T    537.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=8;HaplotypeScore=64.1231;IndelType=D;MQ=60.0;MQ0=0;QD=22.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260116    GT:AD:DP:GQ:PL    1/1:4,20:24:60.09:580,60,0
8    64081791    .    T    G    36.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9665;MQ=47.12;MQ0=0;MQRankSum=-1.754;QD=3.66;ReadPosRankSum=1.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=YTHDF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339066    GT:AD:DP:GQ:PL    0/1:4,6:10:66.62:67,0,124
8    64098729    rs58419856    A    AG    7680.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=163;FS=0.0;HRun=0;HaplotypeScore=342.9346;IndelType=I;MQ=59.9;MQ0=0;QD=47.12;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=YTHDF3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000434924    GT:AD:DP:GQ:PL    1/1:1,162:163:99:7681,482,0
8    64121687    rs7016325    G    A    206    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=34.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC011978.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408744    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
8    64121730    rs7016339    G    C    643.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=35.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC011978.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408744    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:677,48,0
8    64321899    rs10957284    T    C    1176.88    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.464;DB;DP=71;Dels=0.0;FS=0.915;HRun=1;HaplotypeScore=5.5751;MQ=59.68;MQ0=0;MQRankSum=-0.551;QD=16.58;ReadPosRankSum=-0.864;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-3046C4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522265    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1207,0,1020
8    66516490    rs3750184    C    T    293.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458464    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
8    66517486    rs3765205    C    T    378.91    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=31;Dels=0.0;FS=7.084;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.052;QD=12.22;ReadPosRankSum=0.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518908    GT:AD:DP:GQ:PL    0/1:17,14:31:99:409,0,626
8    66525548    rs11559265    T    C    905.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=64;Dels=0.0;FS=2.093;HRun=0;HaplotypeScore=0.7887;MQ=59.64;MQ0=0;MQRankSum=-0.364;QD=14.15;ReadPosRankSum=-0.309;SNPEFF_AMINO_ACID_CHANGE=Q132;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_66525479_66525668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276569    GT:AD:DP:GQ:PL    0/1:32,32:64:99:936,0,1118
8    66620359    rs13274205    G    A    238.48    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=13.25;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTFR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517944    GT:AD:DP:GQ:PL    0/1:10,8:18:99:268,0,362
8    66691934    rs972362    T    A    1047.83    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.761;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=-0.535;QD=12.33;ReadPosRankSum=-1.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379419    GT:AD:DP:GQ:PL    0/1:47,38:85:99:1078,0,1520
8    67357690    rs1025228    G    T    540.22    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=51;Dels=0.0;FS=3.12;HRun=1;HaplotypeScore=0.7887;MQ=59.55;MQ0=0;MQRankSum=-1.183;QD=10.59;ReadPosRankSum=-0.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADHFE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431959    GT:AD:DP:GQ:PL    0/1:28,23:51:99:570,0,915
8    67361018    rs12544088    G    C    925.56    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=1.808;DB;DP=58;Dels=0.0;FS=3.321;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.078;QD=15.96;ReadPosRankSum=-0.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADHFE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431959    GT:AD:DP:GQ:PL    0/1:27,31:58:99:956,0,887
8    67364085    rs2465982    T    C    217.78    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=18.15;ReadPosRankSum=-0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADHFE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449512    GT:AD:DP:GQ:PL    0/1:5,7:12:99:248,0,174
8    67366221    rs147080598    C    T    1180.51    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5572;MQ=59.5;MQ0=0;MQRankSum=-0.751;QD=14.05;ReadPosRankSum=-1.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADHFE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379385    GT:AD:DP:GQ:PL    0/1:44,40:84:99:1210,0,1460
8    67369184    rs2303519    C    T    738.08    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.121;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.491;QD=17.57;ReadPosRankSum=1.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADHFE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379385    GT:AD:DP:GQ:PL    0/1:20,22:42:99:768,0,670
8    67380377    rs2719005    C    T    106.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADHFE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396623    GT:AD:DP:GQ:PL    0/1:3,4:7:94.83:136,0,95
8    67380528    rs1060242    T    C    497.42    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DB;DP=45;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.33;QD=11.05;ReadPosRankSum=-0.444;SNPEFF_AMINO_ACID_CHANGE=C401R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_67380504_67381044;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADHFE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415254    GT:AD:DP:GQ:PL    0/1:24,21:45:99:527,0,700
8    67380677    rs13682    C    T    138.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.378;QD=11.56;ReadPosRankSum=-0.779;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADHFE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466739    GT:AD:DP:GQ:PL    0/1:6,6:12:99:169,0,185
8    67755734    .    A    G    516.28    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DP=52;Dels=0.0;FS=2.365;HRun=1;HaplotypeScore=3.6142;MQ=59.11;MQ0=0;MQRankSum=-1.828;QD=9.93;ReadPosRankSum=1.324;SNPEFF_AMINO_ACID_CHANGE=V342;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_67755687_67755782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262211    GT:AD:DP:GQ:PL    0/1:31,21:52:99:546,0,897
8    67755920    rs7008720    C    A    71.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521152    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:103,9,0
8    67813633    rs2358008    A    G    928.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313616    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:961,69,0
8    67970243    rs6997490    A    G    235.30    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5582;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=9.8;ReadPosRankSum=-0.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517406    GT:AD:DP:GQ:PL    0/1:13,11:24:99:265,0,434
8    67971819    rs10089495    A    T    146.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518768    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:179,15,0
8    67973984    rs7812572    C    A    464.17    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.142;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.651;QD=18.57;ReadPosRankSum=0.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518768    GT:AD:DP:GQ:PL    0/1:9,16:25:99:494,0,266
8    68183864    .    G    A    203.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.466;QD=11.3;ReadPosRankSum=-1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262215    GT:AD:DP:GQ:PL    0/1:10,8:18:99:233,0,350
8    68421768    rs17853192    G    C    752.27    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.426;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.502;QD=14.75;ReadPosRankSum=0.218;SNPEFF_AMINO_ACID_CHANGE=S173C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_68421752_68421853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297770    GT:AD:DP:GQ:PL    0/1:23,28:51:99:782,0,654
8    68658633    rs2553663    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297769    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    68864728    rs61753697    G    A    30.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.07;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=K33;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_68864353_68864770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:4,2:6:60.38:60,0,140
8    68950289    rs6986739    C    A    403.10    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.036;QD=19.2;ReadPosRankSum=-0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:8,13:21:99:433,0,265
8    68965521    rs10504417    C    T    503.52    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.848;DB;DP=44;Dels=0.0;FS=7.413;HRun=1;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;MQRankSum=-1.137;QD=11.44;ReadPosRankSum=-1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:25,19:44:99:534,0,788
8    68968166    rs1434774    C    A    355.65    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=2.064;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.746;QD=6.97;ReadPosRankSum=1.005;SNPEFF_AMINO_ACID_CHANGE=R399;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_68968065_68968209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:38,13:51:99:386,0,1278
8    68968171    rs1434775    G    A    297.75    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=56;Dels=0.0;FS=1.176;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.934;QD=5.32;ReadPosRankSum=0.644;SNPEFF_AMINO_ACID_CHANGE=K400;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_68968065_68968209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:40,16:56:99:328,0,1455
8    68972907    rs1369164    C    G    521.17    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.013;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.971;QD=12.71;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:24,17:41:99:551,0,778
8    68973152    rs6472376    A    C    116.67    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=16.67;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:2,5:7:64.59:147,0,65
8    68981979    rs6990381    T    C    1128.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=35.27;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:1,31:32:52.06:1162,52,0
8    68984675    rs6985922    C    T    1349.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1383,105,0
8    68984989    rs6986296    A    G    176.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
8    68985016    rs6986705    G    A    152.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
8    68993013    .    A    G    1436.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.21;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7648;MQ=59.58;MQ0=0;MQRankSum=0.583;QD=26.12;ReadPosRankSum=-1.284;SNPEFF_AMINO_ACID_CHANGE=G606;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_68992981_68993073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:2,53:55:81.62:1470,82,0
8    68993014    rs12680555    T    C    1453.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.163;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7648;MQ=59.58;MQ0=0;MQRankSum=0.303;QD=26.43;ReadPosRankSum=-1.284;SNPEFF_AMINO_ACID_CHANGE=L607;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_68992981_68993073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:2,53:55:81.61:1487,82,0
8    68993188    rs12682493    A    G    368.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
8    68995404    rs1030751    C    T    622.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:656,48,0
8    68995410    rs79583091    TG    T    656.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=158.6468;IndelType=D;MQ=60.63;MQ0=0;QD=38.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:699,51,0
8    68995468    rs1030752    C    T    1427.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.25;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1460,108,0
8    68995633    rs1030753    A    G    1261.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,36:36:93.31:1294,93,0
8    68995746    rs4592016    G    A    217.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
8    68995753    rs4415294    T    C    133.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
8    68995789    rs4513957    C    T    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
8    69002965    rs12544121    A    G    525.63    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.7;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=59.34;MQ0=0;MQRankSum=1.733;QD=15.02;ReadPosRankSum=-0.974;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:17,18:35:99:556,0,491
8    69003009    rs34882769    GT    G    383.38    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=3.916;DB;DP=28;FS=3.15;HRun=2;HaplotypeScore=114.3623;IndelType=D;MQ=59.56;MQ0=0;MQRankSum=-0.184;QD=13.69;ReadPosRankSum=0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:15,13:28:99:422,0,580
8    69005741    rs62522672    T    C    439.43    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=40;Dels=0.0;FS=6.054;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.724;QD=10.99;ReadPosRankSum=-0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:23,17:40:99:469,0,762
8    69006161    rs3763525    G    A    31.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.22;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:3,2:5:61.09:61,0,105
8    69009268    rs3812458    C    T    617.16    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.603;QD=16.24;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=F795;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_69009252_69009436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:16,22:38:99:647,0,496
8    69012364    rs1529819    G    A    1131.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.119;DB;DP=74;Dels=0.0;FS=3.404;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=15.29;ReadPosRankSum=-2.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:37,37:74:99:1161,0,1328
8    69013818    rs10097733    C    T    227.28    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.78;QD=13.37;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:9,8:17:99:257,0,268
8    69013865    rs10098030    G    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:72,0,29
8    69015242    rs1014663    T    C    917.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.33;DB;DP=72;Dels=0.0;FS=1.153;HRun=0;HaplotypeScore=7.0958;MQ=59.68;MQ0=0;MQRankSum=0.704;QD=12.74;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:36,36:72:99:947,0,1109
8    69016055    rs13262734    A    G    742.59    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=3.475;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=18.56;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:17,23:40:99:773,0,513
8    69020496    rs4260880    T    C    372.99    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.106;QD=14.35;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=S1022;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_69020338_69020512;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396539    GT:AD:DP:GQ:PL    0/1:12,14:26:99:403,0,381
8    69031299    rs7015786    A    T    112.98    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.6;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:143,0,26
8    69046622    rs3793380    G    A    280.74    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=20.05;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:5,9:14:99:311,0,165
8    69104521    rs6472389    A    G    205.43    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.462;QD=9.78;ReadPosRankSum=1.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288368    GT:AD:DP:GQ:PL    0/1:12,9:21:99:235,0,380
8    69243745    rs2676639    C    T    74.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.99;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348340    GT:AD:DP:GQ:PL    0/1:2,3:5:66.50:105,0,66
8    69351982    rs2591004    C    T    212.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337103    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
8    69434195    rs2289831    T    C    785.23    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=56;Dels=0.0;FS=2.699;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=14.02;ReadPosRankSum=-0.082;SNPEFF_AMINO_ACID_CHANGE=S198;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_69434034_69434206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337103    GT:AD:DP:GQ:PL    0/1:25,31:56:99:815,0,796
8    69688772    rs7833828    G    T    575.25    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.673;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.6;MQ0=0;MQRankSum=0.366;QD=12.24;ReadPosRankSum=-0.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325233    GT:AD:DP:GQ:PL    0/1:26,21:47:99:605,0,836
8    69688844    rs7833861    G    A    352.98    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.832;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=22.06;ReadPosRankSum=0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325233    GT:AD:DP:GQ:PL    0/1:5,11:16:99:383,0,163
8    70512693    rs1078494    T    G    111.69    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.731;QD=18.61;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528146    GT:AD:DP:GQ:PL    0/1:1,4:6:26.18:142,0,26
8    70512729    rs1078495    A    G    133.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.684;QD=14.8;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528146    GT:AD:DP:GQ:PL    0/1:3,6:9:96.98:163,0,97
8    70513855    rs752040    A    G    578.08    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.282;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9142;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=14.82;ReadPosRankSum=0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528146    GT:AD:DP:GQ:PL    0/1:18,21:39:99:608,0,561
8    70516968    rs76379305    A    G    245.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.376;DB;DP=30;Dels=0.0;FS=2.182;HRun=5;HaplotypeScore=1.933;MQ=59.23;MQ0=0;MQRankSum=0.819;QD=8.2;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260128    GT:AD:DP:GQ:PL    0/1:18,12:30:99:276,0,457
8    70539911    rs4738002    G    A    1045.24    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.889;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.39;MQ0=0;MQRankSum=0.186;QD=13.75;ReadPosRankSum=0.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260128    GT:AD:DP:GQ:PL    0/1:41,34:76:99:1075,0,1446
8    70540216    rs3802275    C    T    428.41    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=3.646;DB;DP=38;Dels=0.0;FS=5.942;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.197;QD=11.27;ReadPosRankSum=0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260128    GT:AD:DP:GQ:PL    0/1:24,14:38:99:458,0,726
8    70540682    rs4588864    G    C    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260128    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
8    70542154    rs17664872    T    A    42.74    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=8.55;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524731    GT:AD:DP:GQ:PL    0/1:1,4:5:33.98:73,0,34
8    70571313    rs3802278    G    A    764.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.065;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1375;MQ=59.63;MQ0=0;MQRankSum=-0.852;QD=12.14;ReadPosRankSum=0.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532015    GT:AD:DP:GQ:PL    0/1:36,27:63:99:795,0,1057
8    70571531    rs6990375    G    A    890.63    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.166;DB;DP=72;Dels=0.0;FS=2.045;HRun=0;HaplotypeScore=0.6651;MQ=59.68;MQ0=0;MQRankSum=-0.719;QD=12.37;ReadPosRankSum=-0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532015    GT:AD:DP:GQ:PL    0/1:34,37:72:99:921,0,812
8    70588741    rs10448033    T    C    176.67    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=13.59;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260126    GT:AD:DP:GQ:PL    0/1:6,7:13:99:207,0,211
8    70588878    rs10448034    T    C    666.23    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.136;DB;DP=50;Dels=0.0;FS=2.381;HRun=0;HaplotypeScore=0.9734;MQ=59.54;MQ0=0;MQRankSum=-1.932;QD=13.32;ReadPosRankSum=-0.728;SNPEFF_AMINO_ACID_CHANGE=A630;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_70588844_70588908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO5A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530307    GT:AD:DP:GQ:PL    0/1:26,24:50:99:696,0,781
8    70617568    rs2959578    G    A    547.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260126    GT:AD:DP:GQ:PL    1/1:0,16:16:48.11:581,48,0
8    70744812    rs3750266    G    A    1372.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=59.48;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=L33F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_70744002_70745404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO5A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260126    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1405,114,0
8    70899685    rs62531348    G    T    3314    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.19;MQ0=0;QD=33.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-449M6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520803    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3314,250,0
8    70899764    rs62531349    G    A    2446.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.88;MQ0=0;QD=33.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-449M6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520803    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2480,196,0
8    70899946    rs17745232    G    A    539.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=38.57;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-449M6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520803    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:573,42,0
8    70964399    rs10089937    A    G    2273.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8268;MQ=59.68;MQ0=0;QD=32.02;SNPEFF_AMINO_ACID_CHANGE=D543;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_70963886_70964539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276594    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2306,187,0
8    70967607    rs3750225    T    C    990.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.95;SNPEFF_AMINO_ACID_CHANGE=Q472;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_70967535_70967636;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276594    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1023,75,0
8    70967727    rs3750226    T    C    180.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=63.02;MQ0=0;QD=25.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276594    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:214,18,0
8    70978327    rs113007364    T    C    275.51    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=30.61;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426346    GT:AD:DP:GQ:PL    0/1:1,8:9:14.67:305,0,15
8    71012811    rs1106334    A    G    40.63    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.74;QD=3.39;ReadPosRankSum=-0.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-152C15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406023    GT:AD:DP:GQ:PL    0/1:9,3:12:70.62:71,0,304
8    71071695    rs2272670    C    T    3304.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5983;MQ=59.58;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452400    GT:AD:DP:GQ:PL    1/1:0,110:111:99:3304,253,0
8    71075113    rs72663933    T    C    1225.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.458;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9088;MQ=50.19;MQ0=0;MQRankSum=1.7;QD=10.22;ReadPosRankSum=-2.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452400    GT:AD:DP:GQ:PL    0/1:60,60:120:99:1256,0,1411
8    71075146    rs68190236    A    ATTT    1169.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;FS=0.0;HRun=21;HaplotypeScore=812.2324;IndelType=I;MQ=41.91;MQ0=0;QD=13.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452400    GT:AD:DP:GQ:PL    1/1:53,12:88:99:1211,113,0
8    71078749    rs55654377    G    T    1701.18    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=1.047;DB;DP=124;Dels=0.0;FS=1.061;HRun=0;HaplotypeScore=0.9996;MQ=59.81;MQ0=0;MQRankSum=0.281;QD=13.72;ReadPosRankSum=-0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452400    GT:AD:DP:GQ:PL    0/1:67,57:124:99:1731,0,2127
8    71082718    rs2958370    A    G    547.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452400    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:580,42,0
8    71086893    rs72663937    T    C    934.52    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=3.835;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.164;QD=16.99;ReadPosRankSum=0.874;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452400    GT:AD:DP:GQ:PL    0/1:26,29:55:99:965,0,816
8    71087295    rs4738075    G    C    510.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.45;MQ0=0;QD=34.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452400    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:544,42,0
8    71129120    rs71558586    A    AAC    1216.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=52.0561;IndelType=I;MQ=60.45;MQ0=0;QD=50.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452400    GT:AD:DP:GQ:PL    1/1:1,23:24:69.24:1258,69,0
8    71486568    rs268566    G    C    1242.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536748    GT:AD:DP:GQ:PL    1/1:0,36:36:96.30:1275,96,0
8    71506634    rs3816745    G    C    217.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518678    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
8    71510093    rs268626    A    G    1142.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.39;MQ0=0;QD=30.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518678    GT:AD:DP:GQ:PL    1/1:0,38:38:87.28:1176,87,0
8    71512349    rs268592    A    T    984.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262213    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1017,81,0
8    71550058    rs268571    G    C    1064.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517601    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1098,78,0
8    71550895    rs11399242    C    CT    897.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.617;DB;DP=39;FS=0.0;HRun=9;HaplotypeScore=139.7872;IndelType=I;MQ=59.42;MQ0=0;MQRankSum=-0.462;QD=23.0;ReadPosRankSum=-1.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522558    GT:AD:DP:GQ:PL    1/1:11,28:39:76.87:939,77,0
8    71570234    rs7830515    G    A    192.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-382J12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518553    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:225,18,0
8    71574251    rs17760050    A    T    256.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276590    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:290,21,0
8    71593198    rs12681420    A    G    375.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.15;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_71593016_71593565;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XKR9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408926    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:409,30,0
8    71593425    rs6991329    G    A    5995.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8188;MQ=58.93;MQ0=0;QD=35.27;SNPEFF_AMINO_ACID_CHANGE=A44;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_71593016_71593565;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XKR9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408926    GT:AD:DP:GQ:PL    1/1:0,170:170:99:5996,442,0
8    71593663    rs112829444    CTTA    C    2312.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=201.0868;IndelType=D;MQ=52.41;MQ0=0;QD=49.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XKR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519350    GT:AD:DP:GQ:PL    1/1:1,46:47:99:2355,138,0
8    71619094    rs67140729    AATT    A    295.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=32.8495;IndelType=D;MQ=53.95;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XKR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408926    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:338,21,0
8    71645926    rs6980835    C    T    168.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XKR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408926    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
8    72181862    rs2053664    C    T    259    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.939;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.339;QD=11.26;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303824    GT:AD:DP:GQ:PL    0/1:12,11:23:99:289,0,433
8    72211834    rs3779747    A    C    859.91    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.207;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=11.47;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303824    GT:AD:DP:GQ:PL    0/1:46,29:75:99:890,0,1515
8    72212009    rs74879112    G    A    829.43    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.031;DB;DP=43;Dels=0.0;FS=2.499;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=19.29;ReadPosRankSum=1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303824    GT:AD:DP:GQ:PL    0/1:18,25:43:99:859,0,579
8    72361766    rs4446767    A    T    440.77    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.861;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.76;QD=20.99;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1102P16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523987    GT:AD:DP:GQ:PL    0/1:8,13:21:99:471,0,273
8    72362147    rs7821451    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1102P16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523987    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    72935039    rs10085964    C    T    88    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.386;QD=6.77;ReadPosRankSum=1.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520596    GT:AD:DP:GQ:PL    0/1:9,4:13:99:118,0,325
8    72935045    rs10086177    G    C    480.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520596    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:513,39,0
8    72935839    rs959974    G    T    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524152    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,71
8    72935944    rs959975    T    C    586.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524152    GT:AD:DP:GQ:PL    1/1:0,17:17:48.12:619,48,0
8    72936237    rs1384001    C    A    631.33    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.137;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.411;QD=17.06;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524152    GT:AD:DP:GQ:PL    0/1:17,20:37:99:661,0,573
8    72938357    rs2305018    A    C    314.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.794;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=60.0;MQ0=0;MQRankSum=0.643;QD=15.74;ReadPosRankSum=0.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524152    GT:AD:DP:GQ:PL    0/1:10,10:20:99:345,0,349
8    72942210    rs3824151    G    T    824.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.1;MQ0=1;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519720    GT:AD:DP:GQ:PL    1/1:0,27:27:63.20:857,63,0
8    72945725    rs3824152    C    T    33.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519720    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
8    72962985    rs2120474    G    A    1408.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=35.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520788    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1442,108,0
8    72963258    rs1025928    T    C    148.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520788    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:181,15,0
8    72963296    rs1025929    A    G    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520788    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
8    72965973    rs3735942    G    A    1956.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=32.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512290    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1990,150,0
8    72966002    rs3735943    G    A    2181.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=L396;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_72965988_72966102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523582    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2214,169,0
8    72966124    rs3735944    A    G    1938.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=31.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512290    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1972,144,0
8    72971459    rs12541196    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457356    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
8    72971502    rs12541199    T    C    218.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457356    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
8    72971505    rs12541200    T    G    186.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=26.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457356    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:219,18,0
8    72971527    rs12548486    C    T    335.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457356    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:369,27,0
8    72971570    rs9298198    C    T    659.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457356    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:692,51,0
8    72971579    rs28736596    A    C    836.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457356    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:869,66,0
8    72975619    rs35711983    GA    G    179.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=11;HaplotypeScore=42.161;IndelType=D;MQ=59.85;MQ0=0;QD=19.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-383H13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519068    GT:AD:DP:GQ:PL    1/1:0,9:9:26.97:222,27,0
8    72975801    rs7819749    T    G    1222.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=K186N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_72975698_72975806;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262209    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1255,96,0
8    72981327    rs1811457    A    G    5519.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8253;MQ=59.86;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=N125;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_72981258_72981433;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262209    GT:AD:DP:GQ:PL    1/1:0,163:164:99:5519,409,0
8    72981584    rs1373297    C    T    216.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262209    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
8    72987369    rs2278654    C    T    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262209    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
8    72987384    rs2278653    A    T    34.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.74;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262209    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:65,0,70
8    73142726    rs76528949    CA    C    98.88    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=16;FS=0.0;HRun=3;HaplotypeScore=40.5577;IndelType=D;MQ=48.91;MQ0=0;MQRankSum=1.926;QD=6.18;ReadPosRankSum=-1.246;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-656G20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503430    GT:AD:DP:GQ:PL    0/1:11,5:16:99:138,0,427
8    73850203    rs11782118    G    A    2058.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=V871;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_73848170_73850584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523207    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2092,159,0
8    73926236    rs2975841    T    G    325.75    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.316;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.103;QD=8.57;ReadPosRankSum=0.577;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TERF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518695    GT:AD:DP:GQ:PL    0/1:22,16:38:99:356,0,700
8    73951274    rs2306493    T    G    311.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=58.13;MQ0=0;MQRankSum=0.796;QD=20.77;ReadPosRankSum=-0.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TERF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520783    GT:AD:DP:GQ:PL    0/1:5,10:15:99:342,0,162
8    73958033    rs3863242    C    T    105.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.0;QD=17.59;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TERF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276602    GT:AD:DP:GQ:PL    0/1:2,4:6:66.41:136,0,66
8    73982161    rs2291219    A    G    751.64    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.91;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.095;QD=15.03;ReadPosRankSum=1.558;SNPEFF_AMINO_ACID_CHANGE=W186R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_73982040_73982216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf84;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297354    GT:AD:DP:GQ:PL    0/1:22,28:50:99:782,0,677
8    73983988    rs5892392    TAA    T    102.61    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DB;DP=21;FS=0.0;HRun=15;HaplotypeScore=174.0476;IndelType=D;MQ=56.03;MQ0=0;MQRankSum=-1.34;QD=4.89;ReadPosRankSum=1.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297354    GT:AD:DP:GQ:PL    0/1:11,8:21:99:142,0,371
8    73993200    rs10087744    T    G    873.20    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=2.37;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8646;MQ=58.08;MQ0=0;MQRankSum=-0.284;QD=14.31;ReadPosRankSum=-2.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297354    GT:AD:DP:GQ:PL    0/1:26,35:61:99:903,0,728
8    74005131    rs59331088    A    G    407.19    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=30;Dels=0.0;FS=3.707;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.074;QD=13.57;ReadPosRankSum=0.153;SNPEFF_AMINO_ACID_CHANGE=F58L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_74005089_74005507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf84;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297354    GT:AD:DP:GQ:PL    0/1:13,17:30:99:437,0,321
8    74203576    rs4394387    G    A    175.55    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=46.69;MQ0=0;MQRankSum=-1.932;QD=15.96;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431653    GT:AD:DP:GQ:PL    0/1:5,6:11:99:206,0,175
8    74204423    rs5892404    G    GT    496.30    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=0.329;DB;DP=63;FS=2.125;HRun=14;HaplotypeScore=306.3117;IndelType=I;MQ=50.59;MQ0=0;MQRankSum=1.627;QD=7.75;ReadPosRankSum=0.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352983    GT:AD:DP:GQ:PL    0/1:34,24:63:99:535,0,281
8    74204808    rs4237000    T    G    428.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.356;DB;DP=32;Dels=0.0;FS=7.732;HRun=2;HaplotypeScore=0.0;MQ=57.78;MQ0=0;MQRankSum=0.245;QD=13.4;ReadPosRankSum=1.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352983    GT:AD:DP:GQ:PL    0/1:16,16:32:99:459,0,501
8    74334947    rs35621237    AAAAC    A    3031.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=369.6795;IndelType=D;MQ=49.81;MQ0=0;QD=50.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521210    GT:AD:DP:GQ:PL    1/1:4,56:60:99:3073,169,0
8    74335014    rs111759340    T    TAGAAAGAC    2654.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=212.688;IndelType=I;MQ=37.63;MQ0=0;QD=110.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521210    GT:AD:DP:GQ:PL    1/1:10,14:24:63.22:2697,63,0
8    74527996    rs949493    C    T    1544.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=32.17;SNPEFF_AMINO_ACID_CHANGE=V160M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_74527910_74528017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAU2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000517542    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1577,114,0
8    74600722    rs6987030    A    G    151.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7321;MQ=49.96;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519818    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:184,15,0
8    74859123    rs55903314    T    G    616.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284811    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:650,48,0
8    74867927    rs72661848    C    G    62.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=20.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284811    GT:AD:DP:GQ:PL    1/1:0,3:3:9:95,9,0
8    74868374    rs72661849    G    A    30.81    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=2.37;ReadPosRankSum=1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284811    GT:AD:DP:GQ:PL    0/1:9,4:13:60.80:61,0,295
8    74888494    rs2306486    C    T    35.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.96;ReadPosRankSum=-0.406;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_74888444_74888726;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312184    GT:AD:DP:GQ:PL    0/1:3,3:6:65.76:66,0,107
8    74890961    rs62509309    A    G    601.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523794    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:634,48,0
8    74893419    rs61732273    C    G    479.58    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.252;DB;DP=67;Dels=0.0;FS=6.458;HRun=0;HaplotypeScore=0.8667;MQ=59.66;MQ0=0;MQRankSum=0.584;QD=7.16;ReadPosRankSum=1.002;SNPEFF_AMINO_ACID_CHANGE=L116V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_74893390_74895018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312184    GT:AD:DP:GQ:PL    0/1:47,20:67:99:510,0,1476
8    74893821    rs1053079    A    G    471.86    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.417;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.171;QD=14.75;ReadPosRankSum=0.906;SNPEFF_AMINO_ACID_CHANGE=T250A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_74893390_74895018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312184    GT:AD:DP:GQ:PL    0/1:17,15:32:99:502,0,520
8    74893850    rs1053077    C    G    389.84    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.734;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.354;QD=15.59;ReadPosRankSum=0.626;SNPEFF_AMINO_ACID_CHANGE=D259E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_74893390_74895018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312184    GT:AD:DP:GQ:PL    0/1:12,13:25:99:420,0,385
8    74893880    rs7108    C    T    704.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.239;QD=33.54;ReadPosRankSum=0.413;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416961    GT:AD:DP:GQ:PL    1/1:1,20:21:54.18:737,54,0
8    74896654    rs7820077    C    T    71.15    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.57;MQ0=0;MQRankSum=1.221;QD=8.89;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312184    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,180
8    74896665    rs7838331    T    C    73.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=1.517;QD=8.2;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312184    GT:AD:DP:GQ:PL    0/1:6,3:9:99:104,0,176
8    74896677    rs7838336    T    C    62.27    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=54.14;MQ0=0;MQRankSum=1.001;QD=6.23;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312184    GT:AD:DP:GQ:PL    0/1:7,3:10:92.27:92,0,197
8    74896848    rs12544296    G    A    733.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.317;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.34;MQ0=2;MQRankSum=-1.317;QD=27.16;ReadPosRankSum=-0.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312184    GT:AD:DP:GQ:PL    1/1:1,26:27:33.06:766,33,0
8    74917084    rs6472812    A    G    2672.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=30.03;SNPEFF_AMINO_ACID_CHANGE=R56G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_74917031_74917120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY96;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284818    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2706,214,0
8    74917228    rs11466001    A    G    97.86    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.083;QD=7.53;ReadPosRankSum=-1.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284818    GT:AD:DP:GQ:PL    0/1:9,4:13:99:128,0,315
8    75227885    rs16938872    G    A    356.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342232    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:389,30,0
8    75262536    rs4541908    G    T    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GDAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520797    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
8    75262798    rs7828201    G    C    779.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.2;SNPEFF_AMINO_ACID_CHANGE=S34;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_75262617_75262813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GDAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220822    GT:AD:DP:GQ:PL    1/1:0,25:25:60.20:813,60,0
8    75262841    rs4321999    G    A    763.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=27.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GDAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220822    GT:AD:DP:GQ:PL    1/1:0,28:28:63.17:797,63,0
8    75272219    rs10593912    TTGAA    T    231.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=34.1519;IndelType=D;MQ=55.21;MQ0=0;QD=46.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GDAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220822    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:273,15,0
8    75272287    rs3780014    T    C    492.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GDAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220822    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:525,39,0
8    75275312    rs4463412    C    T    2652.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=31.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GDAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523640    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2686,211,0
8    75737770    rs71565414    C    CT    338.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335;DB;DP=31;FS=0.0;HRun=14;HaplotypeScore=173.3794;IndelType=I;MQ=58.43;MQ0=0;MQRankSum=0.07;QD=10.91;ReadPosRankSum=-1.475;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-758M4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523442    GT:AD:DP:GQ:PL    1/1:16,15:31:15.52:380,16,0
8    75737818    rs1991860    C    T    559.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.63;MQ0=0;QD=37.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-758M4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523442    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:593,45,0
8    75757841    rs17292864    C    T    239.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260113    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:272,21,0
8    75898501    rs7821659    G    T    312.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.138;DB;DP=39;Dels=0.0;FS=1.378;HRun=1;HaplotypeScore=1.9997;MQ=59.52;MQ0=0;MQRankSum=0.492;QD=8.0;ReadPosRankSum=-0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262207    GT:AD:DP:GQ:PL    0/1:26,13:39:99:342,0,693
8    75924820    rs12115090    A    C    1617.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.098;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7337;MQ=59.65;MQ0=0;MQRankSum=1.667;QD=30.52;ReadPosRankSum=1.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519798    GT:AD:DP:GQ:PL    1/1:1,52:53:96.11:1651,96,0
8    75937738    rs112989924    A    ATT    504.77    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=65.4004;IndelType=I;MQ=57.97;MQ0=0;MQRankSum=-1.813;QD=21.95;ReadPosRankSum=1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262207    GT:AD:DP:GQ:PL    0/1:13,10:23:99:544,0,508
8    75944409    rs10714892    AT    A    328.08    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=4.629;DB;DP=56;FS=1.157;HRun=12;HaplotypeScore=165.6362;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=0.16;QD=5.86;ReadPosRankSum=0.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262207    GT:AD:DP:GQ:PL    0/1:31,22:56:99:367,0,562
8    76452313    rs2943549    G    A    852.62    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.488;DB;DP=53;Dels=0.0;FS=1.308;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.56;QD=16.09;ReadPosRankSum=-1.349;SNPEFF_AMINO_ACID_CHANGE=S29N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_76452104_76452315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396423    GT:AD:DP:GQ:PL    0/1:22,30:53:99:883,0,627
8    76452421    rs2943551    G    A    71.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.28;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354370    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,131
8    76459726    rs1800922    G    A    214.10    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=16.47;ReadPosRankSum=1.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354370    GT:AD:DP:GQ:PL    0/1:6,7:13:99:244,0,160
8    76465522    rs1800924    T    G    400.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=22.28;ReadPosRankSum=-2.201;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396419    GT:AD:DP:GQ:PL    0/1:6,12:18:99:431,0,193
8    76468077    rs16939097    A    G    140.84    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=15.65;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396419    GT:AD:DP:GQ:PL    0/1:2,7:9:60.01:171,0,60
8    76468139    rs2941468    C    G    664.68    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.832;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.44;MQ0=0;MQRankSum=0.558;QD=24.62;ReadPosRankSum=0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396419    GT:AD:DP:GQ:PL    0/1:8,19:27:99:695,0,240
8    76468282    rs1805098    G    A    1235.13    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=82;Dels=0.0;FS=6.528;HRun=0;HaplotypeScore=3.7227;MQ=59.84;MQ0=0;MQRankSum=-0.292;QD=15.06;ReadPosRankSum=0.757;SNPEFF_AMINO_ACID_CHANGE=M190I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_76468217_76468304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354370    GT:AD:DP:GQ:PL    0/1:37,45:82:99:1265,0,882
8    76468309    rs34611429    GTT    G    611.30    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=3.285;DB;DP=58;FS=8.025;HRun=12;HaplotypeScore=347.9167;IndelType=D;MQ=59.77;MQ0=0;MQRankSum=0.182;QD=10.54;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396419    GT:AD:DP:GQ:PL    0/1:31,26:58:99:650,0,757
8    76472485    rs2941472    G    A    254.14    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.317;QD=12.1;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354370    GT:AD:DP:GQ:PL    0/1:11,10:21:99:284,0,305
8    76472560    rs2941473    A    T    471.86    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.875;DB;DP=39;Dels=0.0;FS=3.331;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=12.1;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354370    GT:AD:DP:GQ:PL    0/1:22,17:39:99:502,0,764
8    76476396    rs1805100    G    A    401.58    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.908;DB;DP=24;Dels=0.0;FS=3.074;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.02;QD=16.73;ReadPosRankSum=0.439;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354370    GT:AD:DP:GQ:PL    0/1:10,14:24:99:432,0,344
8    76476457    rs2272669    G    A    224.40    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.44;ReadPosRankSum=-0.296;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HNF4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354370    GT:AD:DP:GQ:PL    0/1:3,7:10:97.42:254,0,97
8    77690337    rs11782906    G    A    498.34    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.908;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.941;QD=14.24;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000050961    GT:AD:DP:GQ:PL    0/1:18,17:35:99:528,0,606
8    77690380    rs12679822    C    G    623.36    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.78;DB;DP=59;Dels=0.0;FS=2.574;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=10.57;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000050961    GT:AD:DP:GQ:PL    0/1:36,23:59:99:653,0,1157
8    77690563    rs16939357    T    C    2503.15    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=157;Dels=0.0;FS=12.548;HRun=1;HaplotypeScore=2.3437;MQ=59.39;MQ0=1;MQRankSum=0.414;QD=15.94;ReadPosRankSum=-1.423;SNPEFF_AMINO_ACID_CHANGE=H1045;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_77690444_77690675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000050961    GT:AD:DP:GQ:PL    0/1:76,80:157:99:2533,0,2438
8    77745635    rs2733733    G    A    3133.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.49;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=S1103;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_77745574_77745642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000518282    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3167,235,0
8    77754904    rs1825366    G    A    484.94    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=39;Dels=0.0;FS=3.706;HRun=1;HaplotypeScore=1.9452;MQ=58.81;MQ0=0;MQRankSum=-0.269;QD=12.43;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=E1101;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_77754901_77755007;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000050961    GT:AD:DP:GQ:PL    0/1:22,17:39:99:515,0,666
8    77761425    rs35135295    T    C    139.24    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DB;DP=17;Dels=0.0;FS=4.523;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=8.19;ReadPosRankSum=-1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000050961    GT:AD:DP:GQ:PL    0/1:11,6:17:99:169,0,414
8    77765865    rs2728455    C    T    1881.73    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=127;Dels=0.0;FS=1.448;HRun=0;HaplotypeScore=4.2658;MQ=59.56;MQ0=0;MQRankSum=-2.845;QD=14.82;ReadPosRankSum=-1.032;SNPEFF_AMINO_ACID_CHANGE=Y2191;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_77763122_77768536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000050961    GT:AD:DP:GQ:PL    0/1:68,59:127:99:1912,0,2128
8    77767797    rs16939379    C    T    2021.05    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.169;DB;DP=163;Dels=0.0;FS=8.359;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=1.552;QD=12.4;ReadPosRankSum=-0.813;SNPEFF_AMINO_ACID_CHANGE=G2835;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_77763122_77768536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000050961    GT:AD:DP:GQ:PL    0/1:88,74:163:99:2051,0,2408
8    77895865    rs10087163    A    G    3836.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.62;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=C184R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_77892494_77896431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357039    GT:AD:DP:GQ:PL    1/1:0,122:122:99:3837,295,0
8    79073301    rs62510328    A    G    404.06    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.336;DB;DP=40;Dels=0.0;FS=3.005;HRun=0;HaplotypeScore=0.0;MQ=52.91;MQ0=2;MQRankSum=0.139;QD=10.1;ReadPosRankSum=0.232;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,15:40:99:434,0,670
8    79073518    rs62510329    T    C    70.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.03;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,149
8    79591017    rs28429528    G    C    398.36    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.088;QD=16.6;ReadPosRankSum=-1.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM164A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263849    GT:AD:DP:GQ:PL    0/1:10,14:24:99:428,0,348
8    79598666    rs142222654    GTTTA    G    197.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=41.4982;IndelType=D;MQ=58.24;MQ0=0;MQRankSum=0.736;QD=28.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM164A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263849    GT:AD:DP:GQ:PL    1/1:2,5:7:14.14:239,14,0
8    79601420    rs1872072    T    C    461.39    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=17.09;ReadPosRankSum=-0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM164A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263849    GT:AD:DP:GQ:PL    0/1:10,17:27:99:491,0,272
8    79601591    rs148270750    A    C    284.73    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=33;Dels=0.0;FS=6.625;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.19;QD=8.63;ReadPosRankSum=-0.278;SNPEFF_AMINO_ACID_CHANGE=T163P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_79601457_79601608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM164A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263849    GT:AD:DP:GQ:PL    0/1:21,12:33:99:315,0,646
8    79610710    rs1054283    A    G    937.62    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=3.732;DB;DP=61;Dels=0.0;FS=7.147;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.359;QD=15.37;ReadPosRankSum=-0.213;SNPEFF_AMINO_ACID_CHANGE=L222;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_79610649_79610748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM164A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263849    GT:AD:DP:GQ:PL    0/1:25,36:61:99:968,0,783
8    79629738    rs66790684    C    CA    614.19    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=92;FS=0.0;HRun=14;HaplotypeScore=646.7971;IndelType=I;MQ=52.25;MQ0=0;MQRankSum=-2.825;QD=6.68;ReadPosRankSum=-3.225;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519833    GT:AD:DP:GQ:PL    0/1:65,22:92:99:653,0,124
8    79652220    rs41308479    CA    C    164.28    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=2.409;DB;DP=19;FS=0.0;HRun=3;HaplotypeScore=44.1478;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.972;QD=8.65;ReadPosRankSum=2.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263851    GT:AD:DP:GQ:PL    0/1:12,7:19:99:203,0,459
8    79659152    .    A    G    276.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.148;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.442;QD=15.34;ReadPosRankSum=0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379113    GT:AD:DP:GQ:PL    0/1:9,9:18:99:306,0,318
8    79672382    rs2465832    T    C    279.92    MQFilter40    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=18;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.7887;MQ=39.69;MQ0=2;MQRankSum=2.18;QD=15.55;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263851    GT:AD:DP:GQ:PL    0/1:6,11:18:99:310,0,141
8    79672562    rs115830154    A    G    365.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DB;DP=32;Dels=0.0;FS=8.08;HRun=0;HaplotypeScore=0.9332;MQ=42.51;MQ0=1;MQRankSum=0.692;QD=11.43;ReadPosRankSum=-0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263851    GT:AD:DP:GQ:PL    0/1:16,16:32:99:396,0,448
8    79672805    .    A    C    650.66    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.221;DP=74;Dels=0.0;FS=17.67;HRun=0;HaplotypeScore=0.0;MQ=47.09;MQ0=1;MQRankSum=-6.006;QD=8.79;ReadPosRankSum=-0.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263851    GT:AD:DP:GQ:PL    0/1:38,36:74:99:681,0,1246
8    79673847    rs141792902    C    T    265.60    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=46;Dels=0.0;FS=1.536;HRun=0;HaplotypeScore=0.5784;MQ=30.94;MQ0=7;MQRankSum=0.399;QD=5.77;ReadPosRankSum=-0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263851    GT:AD:DP:GQ:PL    0/1:26,20:46:99:296,0,499
8    79673952    rs113688070    T    C    204.20    MQFilter40    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.112;DB;DP=47;Dels=0.0;FS=5.76;HRun=1;HaplotypeScore=0.9916;MQ=29.53;MQ0=7;MQRankSum=-0.98;QD=4.34;ReadPosRankSum=0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263851    GT:AD:DP:GQ:PL    0/1:30,17:47:99:234,0,596
8    80523536    rs3829028    A    G    262.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.674;QD=17.49;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220876    GT:AD:DP:GQ:PL    0/1:5,10:15:99:292,0,162
8    80553916    rs16907025    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.45;MQ0=0;MQRankSum=0.727;QD=12.66;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STMN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220876    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:82,6,0
8    80965272    rs3780009    A    G    80.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518500    GT:AD:DP:GQ:PL    0/1:1,3:4:24.09:111,0,24
8    80965739    rs2303446    C    T    442.21    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.506;QD=11.95;ReadPosRankSum=-0.904;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379096    GT:AD:DP:GQ:PL    0/1:21,16:37:99:472,0,724
8    80965830    rs2303447    T    C    46.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.382;QD=3.88;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379096    GT:AD:DP:GQ:PL    0/1:8,4:12:76.50:77,0,299
8    81400145    rs482951    G    C    134.39    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=10.34;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379091    GT:AD:DP:GQ:PL    0/1:7,6:13:99:164,0,254
8    81426293    rs56063018    T    TA    2387.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=1;HaplotypeScore=108.3509;IndelType=I;MQ=60.0;MQ0=0;QD=43.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379091    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2429,163,0
8    81571548    rs4739605    C    T    51.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF704;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327835    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    81576965    rs7018449    T    C    205.84    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.635;QD=12.11;ReadPosRankSum=-1.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF704;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520336    GT:AD:DP:GQ:PL    0/1:9,8:17:99:236,0,315
8    81733554    rs76946802    A    G    431.59    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.066;DB;DP=35;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.215;QD=12.33;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF704;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327835    GT:AD:DP:GQ:PL    0/1:17,18:35:99:462,0,607
8    81733727    rs3907424    C    A    2223.62    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.188;DB;DP=138;Dels=0.0;FS=3.051;HRun=0;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=-0.643;QD=16.11;ReadPosRankSum=-1.189;SNPEFF_AMINO_ACID_CHANGE=A35S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_81733609_81733850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF704;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327835    GT:AD:DP:GQ:PL    0/1:64,74:138:99:2254,0,2062
8    82539340    rs2294006    T    C    81.65    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=11.66;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=IMPA1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522318    GT:AD:DP:GQ:PL    0/1:3,4:7:99:112,0,101
8    82572649    rs2303581    A    G    109.68    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=7.83;ReadPosRankSum=-0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518188    GT:AD:DP:GQ:PL    0/1:8,6:14:99:140,0,290
8    82606782    rs2955006    A    G    816.18    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=1.998;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.919;QD=14.57;ReadPosRankSum=0.649;SNPEFF_AMINO_ACID_CHANGE=N142;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_82605842_82608409;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000518568    GT:AD:DP:GQ:PL    0/1:29,27:56:99:846,0,941
8    82670412    rs62514262    G    A    737.01    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.85;DB;DP=49;Dels=0.0;FS=8.333;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.01;QD=15.04;ReadPosRankSum=0.63;SNPEFF_AMINO_ACID_CHANGE=Q173;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_82670377_82670530;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP4C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297265    GT:AD:DP:GQ:PL    0/1:25,24:49:99:767,0,749
8    82713930    rs2029417    A    AGAGT    915.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=33.1531;IndelType=I;MQ=45.77;MQ0=0;QD=83.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520618    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:957,33,0
8    82727515    rs2635482    C    T    237.09    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.381;DB;DP=25;Dels=0.0;FS=8.751;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.137;QD=9.48;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345957    GT:AD:DP:GQ:PL    0/1:14,11:25:99:267,0,488
8    82727520    rs2600606    A    T    225.30    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=24;Dels=0.0;FS=9.129;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=9.39;ReadPosRankSum=1.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345957    GT:AD:DP:GQ:PL    0/1:14,10:24:99:255,0,488
8    82727569    rs16909651    T    C    510.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.756;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.427;QD=14.18;ReadPosRankSum=-1.534;SNPEFF_AMINO_ACID_CHANGE=E195;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_82727560_82727629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353788    GT:AD:DP:GQ:PL    0/1:18,18:36:99:541,0,502
8    82751822    rs78592277    T    G    954.77    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=82;Dels=0.0;FS=9.381;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.321;QD=11.64;ReadPosRankSum=0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518183    GT:AD:DP:GQ:PL    0/1:47,35:82:99:985,0,1477
8    82752291    rs12056632    A    G    596.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.029;DB;DP=38;Dels=0.0;FS=2.191;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.35;QD=15.7;ReadPosRankSum=-0.175;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_82751847_82752317;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396330    GT:AD:DP:GQ:PL    0/1:19,19:38:99:627,0,677
8    85441856    rs13248532    T    A    1982.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522613    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2016,150,0
8    85442082    rs78637700    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522613    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    85685843    rs138339386    TG    T    168.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=12.0778;IndelType=D;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517638    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
8    85686975    rs2718970    C    T    1002.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517988    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1035,75,0
8    85774738    rs16913375    C    T    751.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALYL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517638    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:784,60,0
8    86037346    rs16913600    C    A    34.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360375    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
8    86041844    rs2403088    G    A    127.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360375    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
8    86047530    rs4740043    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523669    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    86048000    rs36102162    AT    A    351.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=48.166;IndelType=D;MQ=62.0;MQ0=0;QD=21.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523669    GT:AD:DP:GQ:PL    1/1:0,16:16:47.94:393,48,0
8    86057407    rs7015758    G    C    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360375    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    86057894    rs10606126    GTATT    G    406.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=70.2342;IndelType=D;MQ=53.76;MQ0=0;QD=50.75;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360375    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:448,24,0
8    86089787    rs12926    C    G    315.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=24.25;SNPEFF_AMINO_ACID_CHANGE=A44;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_86089619_86089889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256117    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:348,30,0
8    86114525    rs3217409    T    TTTA    3530.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=0;HaplotypeScore=155.4568;IndelType=I;MQ=54.64;MQ0=0;QD=60.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256117    GT:AD:DP:GQ:PL    1/1:4,54:58:99:3530,163,0
8    86114678    rs2278459    A    G    134.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256117    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
8    86121311    rs3808538    G    T    1680.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.308;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.63;MQ0=0;MQRankSum=0.884;QD=33.61;ReadPosRankSum=-0.672;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417663    GT:AD:DP:GQ:PL    1/1:1,49:50:94.80:1713,95,0
8    86126827    rs112611553    C    CAACATT    7788.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.0;HRun=0;HaplotypeScore=349.3049;IndelType=I;MQ=37.88;MQ0=0;QD=90.56;SNPEFF_AMINO_ACID_CHANGE=V49VMF;SNPEFF_CODON_CHANGE=gtt/gtAATGTTt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_8_86126312_86126860;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf59;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431163    GT:AD:DP:GQ:PL    1/1:19,53:86:99:7788,235,0
8    86158217    rs34150174    TTAAAC    T    1312.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=217.7857;IndelType=D;MQ=38.06;MQ0=0;QD=48.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-219B4.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551479    GT:AD:DP:GQ:PL    1/1:5,22:27:66.22:1355,66,0
8    86158249    rs17740658    C    T    492.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.94;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-219B4.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551479    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:526,45,0
8    86171786    rs62946860    T    C    1646.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321764    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1680,129,0
8    86171816    rs4739699    A    G    1368.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.13;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321764    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1401,114,0
8    86180906    rs10712447    CT    C    85.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=17;HaplotypeScore=206.995;IndelType=D;MQ=51.1;MQ0=0;QD=4.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517298    GT:AD:DP:GQ:PL    1/1:8,8:19:24.07:128,24,0
8    86180944    rs2006767    A    G    210.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=30.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517298    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
8    86244914    rs1995058    G    A    203.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518341    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:236,18,0
8    86250709    rs4740049    T    C    2395.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520692    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2428,181,0
8    86253982    rs1496532    C    T    568.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000522662    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:601,48,0
8    86254062    rs1496531    T    A    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256119    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
8    86351997    rs20571    G    A    1190.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;DB;DP=33;Dels=0.0;FS=4.046;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=36.07;ReadPosRankSum=1.418;SNPEFF_AMINO_ACID_CHANGE=V31I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_86351941_86352138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285381    GT:AD:DP:GQ:PL    1/1:1,32:33:55.66:1223,56,0
8    86360458    rs138223222    TC    T    503.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=37.6597;IndelType=D;MQ=61.53;MQ0=0;QD=35.97;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285381    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:546,42,0
8    86388228    rs2307075    A    C    214.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518231    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
8    86389195    rs11780942    C    T    396.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518231    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:429,33,0
8    86389403    rs703    T    C    4163.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.456;DB;DP=134;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.62;MQ0=0;MQRankSum=0.664;QD=31.07;ReadPosRankSum=-0.508;SNPEFF_AMINO_ACID_CHANGE=L188;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_86389349_86389504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285379    GT:AD:DP:GQ:PL    1/1:1,133:134:99:4164,295,0
8    86389586    rs6605618    A    C    1258.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518231    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1291,99,0
8    86555976    rs149789422    T    C    41.60    MQFilter40;QDFilter2    AB=0.964;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.95;MQ0=155;MQRankSum=-0.831;QD=0.25;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:161,6:167:71.59:72,0,207
8    86555977    rs145577218    G    A    41.60    MQFilter40;QDFilter2    AB=0.964;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=165;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.0;MQ0=153;MQRankSum=-1.788;QD=0.25;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:159,6:165:71.59:72,0,207
8    86556087    .    C    A    261.92    MQFilter40;QDFilter2    AB=0.917;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.217;DP=146;Dels=0.0;FS=3.624;HRun=0;HaplotypeScore=0.0;MQ=16.27;MQ0=120;MQRankSum=0.137;QD=1.79;ReadPosRankSum=-1.505;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:133,12:146:99:292,0,452
8    86556099    .    C    T    251.22    MQFilter40    AB=0.908;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DP=121;Dels=0.0;FS=1.643;HRun=0;HaplotypeScore=0.0;MQ=17.99;MQ0=95;MQRankSum=-0.63;QD=2.08;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:109,11:121:99:281,0,384
8    86556161    .    G    A    455.98    MQFilter40    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.45;DP=53;Dels=0.0;FS=1.5;HRun=0;HaplotypeScore=0.0;MQ=32.45;MQ0=20;MQRankSum=-1.279;QD=8.6;ReadPosRankSum=-0.558;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,16:53:99:486,0,546
8    86556255    .    T    G    131.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.662;DP=24;Dels=0.0;FS=8.28;HRun=2;HaplotypeScore=0.0;MQ=44.91;MQ0=3;MQRankSum=-2.608;QD=5.49;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,8:24:99:162,0,438
8    86556263    .    C    A    92.59    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.008;DP=22;Dels=0.0;FS=5.18;HRun=1;HaplotypeScore=0.0;MQ=45.98;MQ0=2;MQRankSum=-3.317;QD=4.21;ReadPosRankSum=-1.222;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,7:22:99:123,0,448
8    86556277    .    A    G    54.66    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.95;DP=21;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=46.07;MQ0=2;MQRankSum=-3.05;QD=2.6;ReadPosRankSum=0.75;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,6:21:84.65:85,0,442
8    87076150    rs981711    C    G    105.26    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=17.54;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSKH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517981    GT:AD:DP:GQ:PL    0/1:1,5:6:27.96:135,0,28
8    87076500    .    C    T    415.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.177;DP=48;Dels=0.0;FS=9.427;HRun=2;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=-0.033;QD=8.65;ReadPosRankSum=0.675;SNPEFF_AMINO_ACID_CHANGE=R182;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_87076194_87076860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSKH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276616    GT:AD:DP:GQ:PL    0/1:30,18:48:99:445,0,1027
8    87125925    rs117082993    C    T    782.56    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.441;DB;DP=67;Dels=0.0;FS=4.296;HRun=3;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.072;QD=11.68;ReadPosRankSum=-1.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285393    GT:AD:DP:GQ:PL    0/1:36,31:67:99:813,0,1119
8    87151606    rs2466326    G    C    298.68    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.079;QD=11.49;ReadPosRankSum=0.343;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285393    GT:AD:DP:GQ:PL    0/1:16,10:26:99:329,0,567
8    87155094    rs1483779    T    C    1783.78    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=3.052;DB;DP=128;Dels=0.0;FS=4.274;HRun=0;HaplotypeScore=1.5253;MQ=60.0;MQ0=0;MQRankSum=-1.481;QD=13.94;ReadPosRankSum=-1.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285393    GT:AD:DP:GQ:PL    0/1:58,70:128:99:1814,0,1828
8    87165011    rs10504820    T    C    568.61    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.993;DB;DP=37;Dels=0.0;FS=3.928;HRun=0;HaplotypeScore=1.7306;MQ=59.38;MQ0=0;MQRankSum=-0.653;QD=15.37;ReadPosRankSum=1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285393    GT:AD:DP:GQ:PL    0/1:19,18:37:99:599,0,573
8    87414157    rs10608633    CTT    C    218.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=36.2103;IndelType=D;MQ=58.05;MQ0=0;MQRankSum=-0.779;QD=18.23;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265428    GT:AD:DP:GQ:PL    0/1:6,6:12:99:258,0,330
8    87443026    rs76615540    CCATATATATATA    C    353.29    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=166.7716;IndelType=D;MQ=47.1;MQ0=0;MQRankSum=-2.219;QD=39.25;ReadPosRankSum=1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520374    GT:AD:DP:GQ:PL    0/1:4,5:9:99:392,0,107
8    87448060    rs10093379    A    G    278.44    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=19.89;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521079    GT:AD:DP:GQ:PL    0/1:5,9:14:99:308,0,133
8    87455070    rs144206296    TA    T    136.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.574;DB;DP=28;FS=0.0;HRun=14;HaplotypeScore=96.0339;IndelType=D;MQ=57.89;MQ0=0;MQRankSum=-0.651;QD=4.88;ReadPosRankSum=1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265428    GT:AD:DP:GQ:PL    0/1:14,12:28:99:176,0,192
8    87464759    rs10110096    C    T    447.37    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=32;Dels=0.0;FS=4.709;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.415;QD=13.98;ReadPosRankSum=-1.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436619    GT:AD:DP:GQ:PL    0/1:15,17:32:99:477,0,540
8    87474276    rs10100182    C    G    35.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.15;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520521    GT:AD:DP:GQ:PL    0/1:3,2:5:65.76:66,0,98
8    87519315    rs6980476    T    G    1302.63    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.418;DB;DP=90;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=1.6006;MQ=59.74;MQ0=0;MQRankSum=0.234;QD=14.47;ReadPosRankSum=-1.637;SNPEFF_AMINO_ACID_CHANGE=K52N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_87519224_87519341;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM82B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406452    GT:AD:DP:GQ:PL    0/1:44,46:90:99:1333,0,1555
8    87519542    rs7006629    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198765    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    87540872    rs10956871    G    A    387.48    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.339;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.708;QD=16.85;ReadPosRankSum=-0.585;SNPEFF_AMINO_ACID_CHANGE=L33;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_87540754_87540905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000198765    GT:AD:DP:GQ:PL    0/1:11,12:23:99:417,0,295
8    87543219    rs35871312    T    C    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520814    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
8    87543280    rs72690455    C    T    66.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.44;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520814    GT:AD:DP:GQ:PL    0/1:4,3:7:96.09:96,0,145
8    87544832    rs72690457    A    G    1372.58    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=4.434;DB;DP=101;Dels=0.0;FS=5.083;HRun=0;HaplotypeScore=0.9832;MQ=59.82;MQ0=0;MQRankSum=0.614;QD=13.59;ReadPosRankSum=1.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517771    GT:AD:DP:GQ:PL    0/1:52,49:101:99:1403,0,1617
8    87552426    rs16915389    T    C    593.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=49;Dels=0.0;FS=4.218;HRun=0;HaplotypeScore=1.9976;MQ=60.0;MQ0=0;MQRankSum=0.345;QD=12.11;ReadPosRankSum=-1.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198765    GT:AD:DP:GQ:PL    0/1:28,21:49:99:624,0,847
8    87557153    rs17609515    C    T    492.15    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=4.827;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=14.47;ReadPosRankSum=0.488;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523072    GT:AD:DP:GQ:PL    0/1:18,16:34:99:522,0,551
8    87560853    rs72690474    T    G    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517862    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
8    87567031    rs2304790    G    A    1279.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523588    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1313,99,0
8    87567193    rs2304789    C    T    721.85    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.79;DB;DP=50;Dels=0.0;FS=2.415;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=14.44;ReadPosRankSum=-1.45;SNPEFF_AMINO_ACID_CHANGE=T412M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_87567079_87567212;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000198765    GT:AD:DP:GQ:PL    0/1:24,26:50:99:752,0,594
8    87567305    rs3816240    A    C    391.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517354    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:425,36,0
8    87568644    rs2304787    T    G    758.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517354    GT:AD:DP:GQ:PL    1/1:0,25:25:57.19:792,57,0
8    87570665    rs1062850    A    C    1420.25    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=1.624;DB;DP=72;Dels=0.0;FS=1.115;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.416;QD=19.73;ReadPosRankSum=-1.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517354    GT:AD:DP:GQ:PL    0/1:26,46:72:99:1450,0,841
8    87570728    rs1062851    C    T    550.13    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.509;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.838;QD=14.87;ReadPosRankSum=-1.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517354    GT:AD:DP:GQ:PL    0/1:17,20:37:99:580,0,597
8    87588519    rs974279    T    C    143.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320005    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
8    87638453    rs13258590    T    G    35.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
8    87666251    rs4961206    T    G    1217.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=32.89;SNPEFF_AMINO_ACID_CHANGE=T298P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_87666240_87666290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320005    GT:AD:DP:GQ:PL    1/1:0,37:37:93.27:1250,93,0
8    87679098    rs3735967    G    A    324.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320005    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:358,27,0
8    87679303    rs6471482    A    C    1161.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=C234W;SNPEFF_CODON_CHANGE=tgT/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_87679153_87679361;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320005    GT:AD:DP:GQ:PL    1/1:0,33:33:96.30:1195,96,0
8    87680112    rs62804160    T    A    1088.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320005    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1121,84,0
8    87683465    rs1441242    C    T    248.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320005    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
8    87683516    rs1441241    A    T    123.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320005    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
8    87878846    rs2453451    T    G    393.96    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=2.199;DB;DP=41;Dels=0.0;FS=1.921;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;MQRankSum=-0.294;QD=9.61;ReadPosRankSum=-0.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CNBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518476    GT:AD:DP:GQ:PL    0/1:28,13:41:99:424,0,796
8    87899597    rs7841447    C    T    68.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.66;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CNBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518476    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:98,0,70
8    87899871    rs66493340    T    G    943.27    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.854;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=14.08;ReadPosRankSum=0.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CNBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518476    GT:AD:DP:GQ:PL    0/1:36,31:67:99:973,0,1225
8    87899960    rs67958512    A    G    248.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.249;QD=11.84;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CNBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518476    GT:AD:DP:GQ:PL    0/1:12,9:21:99:279,0,406
8    87917236    rs10504828    T    G    758.38    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=44;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=17.24;ReadPosRankSum=-0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CNBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518476    GT:AD:DP:GQ:PL    0/1:17,27:44:99:788,0,499
8    87951714    rs4644279    A    C    1195.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CNBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518476    GT:AD:DP:GQ:PL    1/1:0,31:32:90.30:1229,90,0
8    88218202    rs58151279    AT    A    37.57    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.506;DB;DP=68;FS=0.0;HRun=15;HaplotypeScore=368.1703;IndelType=D;MQ=55.43;MQ0=0;MQRankSum=0.506;QD=0.55;ReadPosRankSum=2.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CNBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518476    GT:AD:DP:GQ:PL    0/1:48,15:68:76.60:77,0,868
8    88299043    rs28454114    A    G    197.18    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=21.91;ReadPosRankSum=0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CNBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522427    GT:AD:DP:GQ:PL    0/1:2,7:9:56.47:227,0,56
8    89081730    rs2616490    T    C    1497.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286614    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1530,111,0
8    89198575    rs1915012    A    G    922.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286614    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:956,75,0
8    90777510    rs431264    G    A    802.99    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.5;MQ0=0;MQRankSum=-0.537;QD=17.46;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517696    GT:AD:DP:GQ:PL    0/1:20,26:46:99:833,0,648
8    90781953    rs40377    C    T    1877.55    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=153;Dels=0.0;FS=3.515;HRun=5;HaplotypeScore=2.0508;MQ=59.27;MQ0=0;MQRankSum=0.258;QD=12.27;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220751    GT:AD:DP:GQ:PL    0/1:79,74:153:99:1908,0,2390
8    90782234    .    A    G    739.11    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.842;DP=33;Dels=0.0;FS=5.185;HRun=0;HaplotypeScore=0.5784;MQ=59.3;MQ0=0;MQRankSum=-0.372;QD=22.4;ReadPosRankSum=0.842;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220751    GT:AD:DP:GQ:PL    0/1:10,23:33:99:769,0,319
8    90802099    rs400411    A    G    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220751    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
8    90933554    rs2697676    A    G    135.41    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=16.93;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520659    GT:AD:DP:GQ:PL    0/1:3,5:8:91.62:165,0,92
8    90947537    rs1063053    C    T    77.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452387    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
8    90955358    rs7840099    C    T    59.03    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=5.9;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520325    GT:AD:DP:GQ:PL    0/1:7,3:10:89.02:89,0,264
8    90955624    rs3736639    T    A    325.70    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.936;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.739;QD=15.51;ReadPosRankSum=0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265433    GT:AD:DP:GQ:PL    0/1:10,11:21:99:356,0,338
8    90958422    rs1061302    T    C    832.87    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.448;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.103;QD=13.22;ReadPosRankSum=0.352;SNPEFF_AMINO_ACID_CHANGE=P590;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_90958368_90958523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409330    GT:AD:DP:GQ:PL    0/1:34,29:63:99:863,0,1103
8    90958530    rs2308962    T    C    1000.34    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.172;DB;DP=80;Dels=0.0;FS=1.96;HRun=0;HaplotypeScore=1.873;MQ=59.71;MQ0=0;MQRankSum=1.917;QD=12.5;ReadPosRankSum=0.593;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265433    GT:AD:DP:GQ:PL    0/1:39,40:80:99:1030,0,1274
8    90967711    rs709816    A    G    862.80    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.012;DB;DP=54;Dels=0.0;FS=1.134;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.746;QD=15.98;ReadPosRankSum=-0.173;SNPEFF_AMINO_ACID_CHANGE=D317;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_90967511_90967783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409330    GT:AD:DP:GQ:PL    0/1:25,29:54:99:893,0,793
8    90967862    rs1805786    G    T    162.54    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.435;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.741;QD=9.56;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265433    GT:AD:DP:GQ:PL    0/1:9,8:17:99:193,0,313
8    90970862    rs1805818    G    T    414.79    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.119;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.59;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265433    GT:AD:DP:GQ:PL    0/1:9,16:25:99:445,0,291
8    90970935    rs2234744    G    A    1036.40    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.476;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=15.94;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265433    GT:AD:DP:GQ:PL    0/1:33,32:65:99:1066,0,968
8    90983252    rs3026271    A    G    58.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.5;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265433    GT:AD:DP:GQ:PL    0/1:6,3:9:88.47:88,0,213
8    90990479    rs1805794    C    G    1008.17    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.134;DB;DP=62;Dels=0.0;FS=5.189;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.615;QD=16.26;ReadPosRankSum=-0.559;SNPEFF_AMINO_ACID_CHANGE=E103Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_90990448_90990551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409330    GT:AD:DP:GQ:PL    0/1:28,34:62:99:1038,0,831
8    90993883    rs1805797    C    T    97.83    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.135;QD=8.15;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494804    GT:AD:DP:GQ:PL    0/1:7,5:12:99:128,0,197
8    90995019    rs1063045    C    T    1056.75    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.444;DB;DP=76;Dels=0.0;FS=2.021;HRun=1;HaplotypeScore=2.6711;MQ=59.7;MQ0=0;MQRankSum=0.611;QD=13.9;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=L34;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_90994950_90995083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265433    GT:AD:DP:GQ:PL    0/1:34,42:76:99:1087,0,981
8    91031074    rs1805867    G    A    853.29    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=67;Dels=0.0;FS=10.132;HRun=0;HaplotypeScore=1.6208;MQ=59.66;MQ0=0;MQRankSum=1.105;QD=12.74;ReadPosRankSum=-0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521668    GT:AD:DP:GQ:PL    0/1:35,31:67:99:883,0,1208
8    91063787    rs7816839    G    T    66.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.59;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220764    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:96,0,26
8    91064036    rs1476590    G    C    645.34    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=36;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.936;QD=17.93;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220764    GT:AD:DP:GQ:PL    0/1:14,22:36:99:675,0,377
8    91064126    rs7162    G    A    634.04    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.379;DB;DP=43;Dels=0.0;FS=1.237;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.261;QD=14.75;ReadPosRankSum=-0.882;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517301    GT:AD:DP:GQ:PL    0/1:17,26:43:99:664,0,445
8    91094086    rs7815279    A    C    315.81    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.042;QD=16.62;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CALB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265431    GT:AD:DP:GQ:PL    0/1:7,12:19:99:346,0,201
8    91094983    rs3087750    G    A    479.26    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=34;Dels=0.0;FS=2.285;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.845;QD=14.1;ReadPosRankSum=0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CALB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514406    GT:AD:DP:GQ:PL    0/1:16,18:34:99:509,0,487
8    91807448    rs7822476    G    A    628.04    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.621;DB;DP=52;Dels=0.0;FS=4.022;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=-0.437;QD=11.85;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417640    GT:AD:DP:GQ:PL    0/1:28,24:52:99:658,0,743
8    91929652    rs111383514    GA    G    218.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.945;DB;DP=30;FS=0.0;HRun=12;HaplotypeScore=72.1954;IndelType=D;MQ=61.07;MQ0=0;MQRankSum=0.622;QD=7.3;ReadPosRankSum=1.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417640    GT:AD:DP:GQ:PL    0/1:15,15:30:99:258,0,367
8    91940446    rs1002583    C    T    1426.89    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=100;Dels=0.0;FS=0.778;HRun=0;HaplotypeScore=3.9434;MQ=59.77;MQ0=0;MQRankSum=1.347;QD=14.27;ReadPosRankSum=-0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417640    GT:AD:DP:GQ:PL    0/1:53,47:100:99:1457,0,1656
8    91953138    rs7018395    G    A    210.45    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=28;Dels=0.0;FS=1.631;HRun=1;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=7.52;ReadPosRankSum=-2.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417640    GT:AD:DP:GQ:PL    0/1:19,9:28:99:240,0,580
8    91963466    rs34782158    CT    C    816.07    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=6.239;DB;DP=66;FS=6.931;HRun=4;HaplotypeScore=293.5792;IndelType=D;MQ=59.65;MQ0=0;MQRankSum=1.897;QD=12.36;ReadPosRankSum=0.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417640    GT:AD:DP:GQ:PL    0/1:36,30:66:99:855,0,1066
8    91967658    rs2677572    T    C    716.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417640    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:750,54,0
8    92021036    rs2054805    C    T    601.73    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=77;Dels=0.0;FS=5.158;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.066;QD=7.81;ReadPosRankSum=-0.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM55A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285419    GT:AD:DP:GQ:PL    0/1:52,25:77:99:632,0,1563
8    92083230    rs28429767    C    T    122.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=12.28;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUD6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285420    GT:AD:DP:GQ:PL    0/1:5,5:10:99:153,0,168
8    92083424    rs11557571    A    G    2087.91    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=0.695;DB;DP=163;Dels=0.0;FS=4.651;HRun=0;HaplotypeScore=1.4679;MQ=59.58;MQ0=0;MQRankSum=0.09;QD=12.81;ReadPosRankSum=0.043;SNPEFF_AMINO_ACID_CHANGE=Q77;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_92083366_92083517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUD6B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285420    GT:AD:DP:GQ:PL    0/1:82,81:163:99:2118,0,2501
8    92083592    rs34396150    CT    C    86.21    QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=57;FS=0.0;HRun=16;HaplotypeScore=319.5915;IndelType=D;MQ=53.82;MQ0=0;MQRankSum=-0.624;QD=1.51;ReadPosRankSum=1.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUD6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285420    GT:AD:DP:GQ:PL    0/1:40,12:57:99:125,0,348
8    92090573    rs11786324    G    C    607.77    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=32;Dels=0.0;FS=4.266;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=18.99;ReadPosRankSum=-0.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUD6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285420    GT:AD:DP:GQ:PL    0/1:13,19:32:99:638,0,412
8    92301249    rs4734009    G    A    395.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276609    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:429,33,0
8    92307978    rs10107822    C    T    521.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276609    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:554,42,0
8    92352887    rs7012287    C    T    521.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276609    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:554,42,0
8    92972780    rs2977676    G    A    390.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.223;DB;DP=39;Dels=0.0;FS=6.41;HRun=2;HaplotypeScore=0.0;MQ=58.32;MQ0=0;MQRankSum=0.998;QD=10.01;ReadPosRankSum=1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1T1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265814    GT:AD:DP:GQ:PL    0/1:26,13:39:99:420,0,770
8    93088151    rs13252280    C    T    1521.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1T1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265814    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1554,114,0
8    93156120    rs7841406    G    T    71.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=23.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-777J24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430661    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
8    93156423    rs7841823    G    T    5757.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3948;MQ=57.19;MQ0=0;QD=32.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-777J24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430661    GT:AD:DP:GQ:PL    1/1:0,175:175:99:5758,421,0
8    93904087    rs3780016    T    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378861    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
8    94715965    rs6997642    C    G    720.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.788;QD=32.73;ReadPosRankSum=-0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM92A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341186    GT:AD:DP:GQ:PL    1/1:1,21:22:26.76:753,27,0
8    94716106    rs6997820    C    G    136.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM92A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341186    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
8    94738629    rs36117362    G    A    1689.02    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=3.871;DB;DP=108;Dels=0.0;FS=7.944;HRun=3;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=0.623;QD=15.64;ReadPosRankSum=-1.437;SNPEFF_AMINO_ACID_CHANGE=E251K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_94738622_94738741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM92A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540007    GT:AD:DP:GQ:PL    0/1:46,61:108:99:1719,0,1314
8    94740320    rs77899597    CA    C    138.18    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=18.4193;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=1.92;QD=17.27;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM92A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341186    GT:AD:DP:GQ:PL    0/1:3,5:8:99:177,0,120
8    94746698    rs3133974    G    T    1357.15    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.913;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.52;MQ0=0;MQRankSum=-0.416;QD=14.14;ReadPosRankSum=-0.129;SNPEFF_AMINO_ACID_CHANGE=P647;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_94741584_94748666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM12B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399300    GT:AD:DP:GQ:PL    0/1:49,47:96:99:1387,0,1381
8    94770615    rs34022540    C    G    223.17    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=18.6;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481620    GT:AD:DP:GQ:PL    0/1:5,7:12:99:253,0,173
8    94781980    rs13271723    G    A    295.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.12;QD=19.71;ReadPosRankSum=1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455946    GT:AD:DP:GQ:PL    0/1:6,9:15:99:326,0,210
8    94792887    rs35793208    G    A    1589.60    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=2.863;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.308;MQ=60.0;MQ0=0;MQRankSum=-0.285;QD=16.91;ReadPosRankSum=-0.863;SNPEFF_AMINO_ACID_CHANGE=D158N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_94792821_94792975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452276    GT:AD:DP:GQ:PL    0/1:42,52:94:99:1620,0,1318
8    94794620    rs3097427    C    T    723.24    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.605;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.529;QD=21.92;ReadPosRankSum=1.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496213    GT:AD:DP:GQ:PL    0/1:10,23:33:99:753,0,253
8    94805245    rs3134029    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.23;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409623    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    94808165    rs3134031    A    G    874.89    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.188;DB;DP=77;Dels=0.0;FS=6.444;HRun=0;HaplotypeScore=0.9933;MQ=59.7;MQ0=0;MQRankSum=0.156;QD=11.36;ReadPosRankSum=1.481;SNPEFF_AMINO_ACID_CHANGE=I523V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_94808129_94808215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409623    GT:AD:DP:GQ:PL    0/1:48,29:77:99:905,0,1519
8    94935937    rs4735258    T    C    369.50    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=22;Dels=0.0;FS=4.434;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=16.8;ReadPosRankSum=-2.003;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518107    GT:AD:DP:GQ:PL    0/1:9,13:22:99:399,0,309
8    95143172    rs1051624    T    G    655.56    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.301;DB;DP=58;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.236;QD=11.3;ReadPosRankSum=1.033;SNPEFF_AMINO_ACID_CHANGE=E525A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95143104_95143220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441892    GT:AD:DP:GQ:PL    0/1:34,24:58:99:686,0,1101
8    95143186    rs1051623    C    G    805.34    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=56;Dels=0.0;FS=3.78;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.989;QD=14.38;ReadPosRankSum=-0.989;SNPEFF_AMINO_ACID_CHANGE=E520D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95143104_95143220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441892    GT:AD:DP:GQ:PL    0/1:30,26:56:99:835,0,939
8    95158146    rs13263145    G    C    813.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.552;DB;DP=70;Dels=0.0;FS=3.284;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.457;QD=11.62;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:40,30:70:99:843,0,1379
8    95158382    rs1131830    C    T    341.23    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.426;DB;DP=46;Dels=0.0;FS=1.315;HRun=1;HaplotypeScore=0.9469;MQ=59.5;MQ0=0;MQRankSum=0.297;QD=7.42;ReadPosRankSum=0.47;SNPEFF_AMINO_ACID_CHANGE=L433;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95158156_95158395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441892    GT:AD:DP:GQ:PL    0/1:29,16:46:99:371,0,917
8    95164509    rs2446871    C    A    36.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.22;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:67,0,29
8    95172403    rs11786634    T    C    273.26    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.148;DB;DP=25;Dels=0.0;FS=4.471;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.56;QD=10.93;ReadPosRankSum=-0.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:11,14:25:99:303,0,358
8    95172487    rs11785909    A    T    70.15    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=8.77;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,180
8    95174185    rs72670346    T    G    35.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.78;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:65,0,63
8    95174286    rs78214329    GA    G    351.55    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=4.131;DB;DP=35;FS=4.781;HRun=6;HaplotypeScore=106.5738;IndelType=D;MQ=59.65;MQ0=0;MQRankSum=-0.059;QD=10.04;ReadPosRankSum=1.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:19,16:35:99:391,0,539
8    95182801    rs72670354    G    T    586.95    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=34;Dels=0.0;FS=3.396;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=17.26;ReadPosRankSum=-0.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521491    GT:AD:DP:GQ:PL    0/1:14,20:34:99:617,0,402
8    95182986    rs2446866    T    C    240.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.119;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.943;QD=13.34;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521491    GT:AD:DP:GQ:PL    0/1:9,9:18:99:270,0,277
8    95186295    rs2514813    T    C    3534.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=59.28;MQ0=0;QD=36.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521491    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3535,262,0
8    95186382    rs3214050    G    A    1601.29    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.319;DB;DP=114;Dels=0.0;FS=1.597;HRun=1;HaplotypeScore=1.8273;MQ=57.53;MQ0=0;MQRankSum=2.074;QD=14.05;ReadPosRankSum=-1.262;SNPEFF_AMINO_ACID_CHANGE=V177;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95186330_95186488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:62,52:114:99:1631,0,1878
8    95188583    rs16912    T    C    43.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:74,0,33
8    95188850    rs2243518    T    C    1328.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.89;SNPEFF_AMINO_ACID_CHANGE=K115E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95188769_95188907;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1362,105,0
8    95206799    rs56129387    G    T    274.79    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.349;DB;DP=27;Dels=0.0;FS=3.736;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.778;QD=10.18;ReadPosRankSum=-0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000027335    GT:AD:DP:GQ:PL    0/1:15,11:27:99:305,0,505
8    95390921    rs716770    C    T    194.32    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.426;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=9.72;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD54B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518358    GT:AD:DP:GQ:PL    0/1:13,7:20:99:224,0,480
8    95399045    rs2470741    C    T    116.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD54B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463267    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
8    95419698    rs2291439    A    G    1090.64    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.995;DB;DP=68;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.426;QD=15.81;ReadPosRankSum=-1.884;SNPEFF_AMINO_ACID_CHANGE=N250;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95419667_95419948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD54B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336148    GT:AD:DP:GQ:PL    0/1:31,37:68:99:1121,0,978
8    95470697    rs2919660    C    A    302.76    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=40;Dels=0.0;FS=1.932;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=7.57;ReadPosRankSum=1.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD54B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297592    GT:AD:DP:GQ:PL    0/1:27,13:40:99:333,0,839
8    95479879    rs3099398    A    G    405.22    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.784;QD=20.26;ReadPosRankSum=-0.949;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD54B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297592    GT:AD:DP:GQ:PL    0/1:6,14:20:99:435,0,161
8    95504224    rs3098725    G    A    75.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.8;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:4,3:7:99:106,0,147
8    95507328    rs4366055    A    C    103.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.97;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,139
8    95524209    rs3099412    C    T    215.67    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.099;QD=14.38;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:8,7:15:99:246,0,243
8    95541223    rs957447    C    A    384.17    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.398;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.19;QD=11.3;ReadPosRankSum=-1.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519001    GT:AD:DP:GQ:PL    0/1:18,16:34:99:414,0,615
8    95541302    rs957448    A    G    446.58    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.558;QD=11.75;ReadPosRankSum=-1.086;SNPEFF_AMINO_ACID_CHANGE=G292;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95541298_95541570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:21,17:38:99:477,0,637
8    95541371    rs957446    T    A    241.33    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DB;DP=28;Dels=0.0;FS=3.738;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.157;QD=8.62;ReadPosRankSum=1.517;SNPEFF_AMINO_ACID_CHANGE=R269;SNPEFF_CODON_CHANGE=cgA/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95541298_95541570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:19,9:28:99:271,0,653
8    95541663    rs3098719    T    A    73.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.19;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,108
8    95547005    rs72177145    A    AT    32.29    QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.344;DB;DP=26;FS=2.114;HRun=12;HaplotypeScore=63.2611;IndelType=I;MQ=59.28;MQ0=0;MQRankSum=-0.985;QD=1.24;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:21,5:26:71.31:71,0,363
8    95547119    rs2304764    T    G    216.34    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.502;DB;DP=34;Dels=0.0;FS=3.949;HRun=2;HaplotypeScore=4.3255;MQ=56.52;MQ0=0;MQRankSum=0.132;QD=6.36;ReadPosRankSum=1.344;SNPEFF_AMINO_ACID_CHANGE=P144;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95547067_95547235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:19,15:34:99:246,0,479
8    95550357    rs1866845    A    T    210.78    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.377;QD=19.16;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297591    GT:AD:DP:GQ:PL    0/1:3,8:11:94.66:241,0,95
8    95559092    rs3133651    T    C    1073.05    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.867;DB;DP=61;Dels=0.0;FS=7.237;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.228;QD=17.59;ReadPosRankSum=1.11;SNPEFF_AMINO_ACID_CHANGE=L16;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95558771_95560630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC023632.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391679    GT:AD:DP:GQ:PL    0/1:23,38:61:99:1103,0,695
8    95565538    rs3133658    G    C    1104.83    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DB;DP=69;Dels=0.0;FS=1.49;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=-1.794;QD=16.01;ReadPosRankSum=1.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC023632.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391679    GT:AD:DP:GQ:PL    0/1:35,34:69:99:1135,0,1054
8    95653339    rs74925267    C    G    249.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=18;Dels=0.0;FS=3.214;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.311;QD=13.85;ReadPosRankSum=-0.044;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:8,10:18:99:279,0,277
8    95654043    rs62523409    C    T    91.57    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=6.54;ReadPosRankSum=0.778;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_95653840_95654312;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520385    GT:AD:DP:GQ:PL    0/1:10,4:14:99:122,0,360
8    95655415    rs2303451    T    A    336.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.459;DB;DP=28;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.905;QD=12.02;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:16,12:28:99:367,0,485
8    95658225    rs3824132    G    T    181.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.07;MQ0=0;MQRankSum=0.365;QD=18.11;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:4,6:10:94.47:211,0,94
8    95658270    rs3824131    T    C    302.87    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=-0.813;QD=18.93;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:6,10:16:99:333,0,195
8    95658287    .    A    AT    475.03    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.804;DP=27;FS=0.0;HRun=5;HaplotypeScore=120.4497;IndelType=I;MQ=60.35;MQ0=0;MQRankSum=1.414;QD=17.59;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:12,15:27:99:514,0,245
8    95658526    rs60139063    T    C    1457.31    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.737;DB;DP=111;Dels=0.0;FS=5.171;HRun=0;HaplotypeScore=0.0;MQ=56.19;MQ0=0;MQRankSum=-2.339;QD=13.13;ReadPosRankSum=-3.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:53,58:111:99:1487,0,1745
8    95658562    rs57602858    A    AAAAT    1862.40    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=61;FS=5.722;HRun=0;HaplotypeScore=275.5038;IndelType=I;MQ=55.97;MQ0=0;MQRankSum=-2.573;QD=30.53;ReadPosRankSum=1.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:36,24:61:99:1901,0,1904
8    95658708    rs1035745    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522920    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    95673674    rs6471455    A    C    61.24    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=7.66;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:5,3:8:91.24:91,0,175
8    95673945    rs7820441    A    G    224.56    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.101;QD=17.27;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:6,7:13:99:255,0,200
8    95674432    rs2303453    G    C    448.30    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.933;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.856;QD=12.45;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358397    GT:AD:DP:GQ:PL    0/1:19,17:36:99:478,0,657
8    95674823    rs71567033    G    GT    627.01    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.506;DB;DP=63;FS=0.0;HRun=12;HaplotypeScore=246.3276;IndelType=I;MQ=57.11;MQ0=0;MQRankSum=2.262;QD=9.95;ReadPosRankSum=-0.506;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520385    GT:AD:DP:GQ:PL    0/1:29,31:63:99:666,0,210
8    95674930    rs3764239    G    C    86.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=41.28;MQ0=0;MQRankSum=1.79;QD=5.42;ReadPosRankSum=-2.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520385    GT:AD:DP:GQ:PL    0/1:10,6:16:99:117,0,259
8    95677132    rs1426171    T    C    1631.48    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.184;DB;DP=138;Dels=0.0;FS=2.168;HRun=1;HaplotypeScore=1.7719;MQ=59.83;MQ0=0;MQRankSum=0.808;QD=11.82;ReadPosRankSum=-1.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520385    GT:AD:DP:GQ:PL    0/1:71,67:138:99:1661,0,2306
8    95680229    rs1549466    C    T    1315.58    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.415;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.39;MQ0=0;MQRankSum=-0.047;QD=17.31;ReadPosRankSum=-0.605;SNPEFF_AMINO_ACID_CHANGE=V187;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95680177_95680478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000517610    GT:AD:DP:GQ:PL    0/1:32,44:76:99:1346,0,1056
8    95680673    rs2241504    G    A    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517556    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:75,0,31
8    95683524    rs10956925    C    T    183.12    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=16.65;ReadPosRankSum=2.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517556    GT:AD:DP:GQ:PL    0/1:5,6:11:99:213,0,174
8    95690579    rs12677519    T    C    1120.80    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.073;DB;DP=89;Dels=0.0;FS=4.537;HRun=0;HaplotypeScore=1.7653;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=12.59;ReadPosRankSum=-0.353;SNPEFF_AMINO_ACID_CHANGE=N459;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_95690431_95690599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000517610    GT:AD:DP:GQ:PL    0/1:51,38:89:99:1151,0,1705
8    95738717    rs7816645    A    G    1011.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1045,78,0
8    95746833    rs7815731    C    G    319.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:352,27,0
8    95750546    .    CA    C    131.16    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=16;HaplotypeScore=46.7456;IndelType=D;MQ=61.78;MQ0=0;QD=10.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:2,10:12:30.53:173,31,0
8    95751502    rs7823050    T    A    272.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:305,27,0
8    95782864    rs13250360    A    G    495.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:529,39,0
8    95789620    rs6992217    G    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    95789654    rs7017149    T    G    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
8    95790085    rs11996148    T    C    931.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:965,81,0
8    95790256    rs13249787    C    T    31.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=15.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:62,6,0
8    95790265    rs13258377    T    C    30.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=15.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:62,6,0
8    95793284    rs36116205    AT    A    112.31    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=39;FS=0.0;HRun=18;HaplotypeScore=226.0593;IndelType=D;MQ=52.32;MQ0=0;MQRankSum=-0.408;QD=2.88;ReadPosRankSum=0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414645    GT:AD:DP:GQ:PL    0/1:21,12:39:99:151,0,149
8    95906554    rs2466431    C    G    1978.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308108    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2011,150,0
8    96044076    rs11781001    G    A    130.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286687    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
8    96046094    rs2678823    G    A    481.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286687    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:515,42,0
8    96046493    rs2599715    G    C    518.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286687    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:551,42,0
8    96047806    rs34960210    T    TA    888.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.003;DB;DP=56;FS=0.0;HRun=13;HaplotypeScore=278.9907;IndelType=I;MQ=58.29;MQ0=0;MQRankSum=1.232;QD=15.87;ReadPosRankSum=1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286687    GT:AD:DP:GQ:PL    1/1:18,34:56:62.25:931,62,0
8    96053782    rs79118993    GCT    G    3657.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;FS=0.0;HRun=0;HaplotypeScore=280.2472;IndelType=D;MQ=59.39;MQ0=0;QD=44.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286687    GT:AD:DP:GQ:PL    1/1:0,83:83:99:3658,250,0
8    96054000    rs7818382    C    T    442.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286687    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:475,36,0
8    96070181    rs2678832    T    C    1004.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=35.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517976    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1037,75,0
8    96264286    rs62522659    G    A    108.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=10.82;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286688    GT:AD:DP:GQ:PL    0/1:6,4:10:99:138,0,166
8    96281020    rs62524393    G    C    31.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286688    GT:AD:DP:GQ:PL    1/1:0,2:2:6:62,6,0
8    96281073    rs62524394    G    A    151.25    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=18.91;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286688    GT:AD:DP:GQ:PL    0/1:1,7:8:23.17:181,0,23
8    97172403    rs2466129    A    G    659.60    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.409;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9243;MQ=60.0;MQ0=0;MQRankSum=-1.338;QD=11.78;ReadPosRankSum=-1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287020    GT:AD:DP:GQ:PL    0/1:29,27:56:99:690,0,975
8    97247469    rs2643338    A    G    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287025    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
8    97256341    rs6993518    T    A    912.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287025    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:946,72,0
8    97257982    rs871798    T    C    545.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287025    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:578,45,0
8    97258719    rs1878638    C    T    702.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287025    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:735,54,0
8    97263012    .    C    CA    230.21    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=8;HaplotypeScore=25.3238;IndelType=I;MQ=59.85;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287025    GT:AD:DP:GQ:PL    1/1:1,8:9:24.07:272,24,0
8    97263418    rs7814319    C    T    247.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287025    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
8    97270991    rs2319603    G    A    793.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=36.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287025    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:826,60,0
8    97321898    rs961075    T    A    682.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455950    GT:AD:DP:GQ:PL    1/1:0,23:23:60.17:716,60,0
8    97332256    rs11782748    G    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455950    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    97342536    rs2280263    A    G    421.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.326;DB;DP=26;Dels=0.0;FS=9.165;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.968;QD=16.2;ReadPosRankSum=-0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455950    GT:AD:DP:GQ:PL    0/1:10,15:26:99:451,0,207
8    97343176    rs2271775    G    T    196.58    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.71;MQ0=0;MQRankSum=-0.439;QD=10.92;ReadPosRankSum=-2.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455950    GT:AD:DP:GQ:PL    0/1:11,7:18:99:227,0,324
8    97345590    rs3735986    A    G    1495.41    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.61;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.65;MQ0=0;MQRankSum=-1.199;QD=23.01;ReadPosRankSum=-0.526;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455950    GT:AD:DP:GQ:PL    0/1:21,44:65:99:1525,0,655
8    97605800    rs1126681    C    T    316.07    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.758;DB;DP=30;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=10.54;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=Y22;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_97605708_97605819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519914    GT:AD:DP:GQ:PL    0/1:17,13:30:99:346,0,483
8    97847358    rs1864384    G    T    396.27    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.981;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.15;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=V197;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_97847201_97847408;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010859.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220763    GT:AD:DP:GQ:PL    0/1:13,15:28:99:426,0,343
8    97892348    rs28452385    G    A    199.67    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.905;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.34;QD=9.51;ReadPosRankSum=-1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010859.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220763    GT:AD:DP:GQ:PL    0/1:13,8:21:99:230,0,477
8    98155442    rs11306979    CT    C    1880.02    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=7.664;DB;DP=126;FS=1.453;HRun=2;HaplotypeScore=328.7545;IndelType=D;MQ=59.98;MQ0=0;MQRankSum=-0.846;QD=14.92;ReadPosRankSum=-0.148;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010859.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220763    GT:AD:DP:GQ:PL    0/1:71,55:126:99:1919,0,2982
8    98289986    rs28669903    C    T    153.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.51;SNPEFF_AMINO_ACID_CHANGE=P29;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_98285717_98290176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPYL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322128    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:186,15,0
8    98673250    rs16896067    C    T    112.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.06;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336273    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,104
8    98703547    rs12675731    T    G    199.89    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.56;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336273    GT:AD:DP:GQ:PL    0/1:1,6:7:18.24:230,0,18
8    98712107    rs140721783    AT    A    302.31    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.617;DB;DP=35;FS=0.0;HRun=8;HaplotypeScore=87.9995;IndelType=D;MQ=59.47;MQ0=0;MQRankSum=0.296;QD=8.64;ReadPosRankSum=1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336273    GT:AD:DP:GQ:PL    0/1:20,15:35:99:341,0,486
8    98788261    rs2449508    G    T    147.29    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.244;QD=12.27;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=T145;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_98787935_98788336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:5,7:12:99:177,0,128
8    98817559    rs4735497    T    TG    705.19    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.84;DB;DP=33;FS=5.499;HRun=0;HaplotypeScore=161.1384;IndelType=I;MQ=58.43;MQ0=0;MQRankSum=2.796;QD=21.37;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:9,24:33:99:744,0,150
8    98827531    rs7818775    G    A    208.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=7.73;ReadPosRankSum=0.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:18,9:27:99:239,0,500
8    98827636    rs7818662    C    A    466.39    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.553;DB;DP=33;Dels=0.0;FS=5.884;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=-0.179;QD=14.13;ReadPosRankSum=-0.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:15,18:33:99:496,0,366
8    98828215    rs10667481    A    ACTT    1360.75    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.407;DB;DP=46;FS=1.821;HRun=0;HaplotypeScore=155.8137;IndelType=I;MQ=55.29;MQ0=0;MQRankSum=-1.269;QD=29.58;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:25,20:46:99:1400,0,917
8    98828529    rs2331656    A    G    146.36    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.71;MQ0=0;MQRankSum=-0.589;QD=5.42;ReadPosRankSum=-0.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:14,11:27:99:176,0,425
8    98828532    rs2331657    C    G    136.32    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.45;MQ0=0;MQRankSum=-0.297;QD=5.24;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:13,12:26:99:166,0,423
8    98831577    rs62524114    G    A    61.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.39;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:92,0,30
8    98837520    rs28498698    C    T    141.62    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=15.74;ReadPosRankSum=-2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:3,6:9:99:172,0,105
8    98865287    rs11991357    G    A    193.76    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.15;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.034;QD=8.81;ReadPosRankSum=0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAPTM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378722    GT:AD:DP:GQ:PL    0/1:14,8:22:99:224,0,517
8    98943446    rs2290470    T    C    2545.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=T136;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_98943181_98943750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2578,211,0
8    98954012    rs2513845    T    C    4323.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=37.6;SNPEFF_AMINO_ACID_CHANGE=H240;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_98954005_98954127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    1/1:0,115:115:99:4324,322,0
8    98954272    rs3018906    T    A    500.69    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=0.613;QD=16.15;ReadPosRankSum=0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:15,16:31:99:531,0,507
8    98973560    rs62523561    C    T    1022.40    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.199;DB;DP=77;Dels=0.0;FS=1.293;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.342;QD=13.28;ReadPosRankSum=1.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:41,36:77:99:1052,0,1250
8    98991221    rs1869609    A    G    1565.20    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=2.479;DB;DP=130;Dels=0.0;FS=4.441;HRun=0;HaplotypeScore=3.7264;MQ=59.36;MQ0=0;MQRankSum=-1.505;QD=12.04;ReadPosRankSum=-2.397;SNPEFF_AMINO_ACID_CHANGE=K356E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_98991114_98991236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:58,72:130:99:1595,0,1758
8    99006489    .    G    GGAAGAAGGAGAA    568.02    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DP=15;FS=0.0;HRun=0;HaplotypeScore=129.1027;IndelType=I;MQ=57.28;MQ0=0;MQRankSum=-0.065;QD=37.87;ReadPosRankSum=-1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:10,3:15:99:607,0,720
8    99006736    rs11559202    C    T    2874.30    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=4.429;DB;DP=231;Dels=0.0;FS=6.494;HRun=0;HaplotypeScore=1.6498;MQ=59.7;MQ0=0;MQRankSum=-0.259;QD=12.44;ReadPosRankSum=1.271;SNPEFF_AMINO_ACID_CHANGE=H370;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_99006708_99006830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:129,101:231:99:2904,0,3466
8    99006748    rs11559201    C    T    2914.43    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=3.683;DB;DP=227;Dels=0.0;FS=11.08;HRun=0;HaplotypeScore=6.2968;MQ=59.7;MQ0=0;MQRankSum=-0.986;QD=12.84;ReadPosRankSum=0.273;SNPEFF_AMINO_ACID_CHANGE=H374;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_99006708_99006830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:124,103:227:99:2944,0,3286
8    99016092    rs10955143    A    G    242.81    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=14.28;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:9,8:17:99:273,0,246
8    99016182    rs10955144    G    A    95.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=13.7;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,99
8    99019979    rs2444893    A    G    286.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522270    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
8    99030280    rs2248014    T    C    1639.91    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.524;DB;DP=116;Dels=0.0;FS=0.699;HRun=0;HaplotypeScore=2.6996;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=14.14;ReadPosRankSum=-0.221;SNPEFF_AMINO_ACID_CHANGE=D301;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_99030222_99030344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522025    GT:AD:DP:GQ:PL    0/1:57,59:116:99:1670,0,1834
8    99033328    rs6987112    A    G    603.68    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.01;MQ0=0;MQRankSum=0.713;QD=12.84;ReadPosRankSum=0.777;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518164    GT:AD:DP:GQ:PL    0/1:23,24:47:99:634,0,709
8    99040154    rs2290467    A    C    120.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.656;QD=8.58;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518370    GT:AD:DP:GQ:PL    0/1:8,6:14:99:150,0,261
8    99044997    rs72678742    C    T    32.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:64,6,0
8    99045009    rs71514975    C    T    116.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
8    99045454    rs6985709    G    A    1254.53    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.973;MQ=59.62;MQ0=0;MQRankSum=1.333;QD=20.91;ReadPosRankSum=-0.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:21,39:60:99:1285,0,665
8    99045978    rs2255464    A    C    48.40    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.254;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=3.72;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254898    GT:AD:DP:GQ:PL    0/1:10,3:13:78.40:78,0,367
8    99048049    rs3088121    A    G    550.33    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.415;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=22.93;ReadPosRankSum=-0.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378716    GT:AD:DP:GQ:PL    0/1:6,18:24:99:580,0,176
8    99054796    rs56137923    C    T    506.04    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.165;DB;DP=44;Dels=0.0;FS=7.315;HRun=0;HaplotypeScore=0.0;MQ=54.94;MQ0=0;MQRankSum=-1.192;QD=11.5;ReadPosRankSum=-0.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517489    GT:AD:DP:GQ:PL    0/1:21,22:44:99:536,0,591
8    99054836    rs3073528    C    CAAA    1041.63    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=4.069;DB;DP=67;FS=9.23;HRun=12;HaplotypeScore=479.8234;IndelType=I;MQ=53.82;MQ0=0;MQRankSum=-3.507;QD=15.55;ReadPosRankSum=-3.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517489    GT:AD:DP:GQ:PL    0/1:40,15:67:99:1081,0,692
8    99057150    rs11777189    C    A    1696.58    PASS    AB=0.601;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.921;DB;DP=148;Dels=0.0;FS=4.602;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-1.41;QD=11.46;ReadPosRankSum=-0.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287038    GT:AD:DP:GQ:PL    0/1:89,59:148:99:1727,0,2729
8    99057526    rs62724461    G    A    475.91    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=1.114;DB;DP=50;Dels=0.02;FS=0.0;HRun=2;HaplotypeScore=1.7987;MQ=58.63;MQ0=0;MQRankSum=-0.934;QD=9.33;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287038    GT:AD:DP:GQ:PL    0/1:31,19:50:99:506,0,856
8    99105365    rs35021457    GC    G    341.26    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.172;DB;DP=32;FS=0.0;HRun=5;HaplotypeScore=76.3702;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.893;QD=10.66;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318528    GT:AD:DP:GQ:PL    0/1:18,14:32:99:380,0,642
8    99114970    rs8218    A    C    239.08    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9242;MQ=60.0;MQ0=0;MQRankSum=0.263;QD=9.96;ReadPosRankSum=-2.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRSP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520989    GT:AD:DP:GQ:PL    0/1:14,10:24:99:269,0,489
8    99118654    rs2242196    C    T    1444.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.44;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRSP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254878    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1477,117,0
8    99118732    rs2514336    T    A    290.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRSP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254878    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
8    99135437    rs11997551    A    G    134.57    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=14.95;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349693    GT:AD:DP:GQ:PL    0/1:4,5:9:99:165,0,133
8    99135787    rs28556674    A    G    146.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=13.35;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349693    GT:AD:DP:GQ:PL    0/1:6,5:11:99:177,0,196
8    99140084    rs75598961    C    G    209.83    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.818;QD=20.98;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349693    GT:AD:DP:GQ:PL    0/1:3,7:10:76.19:240,0,76
8    99140208    rs3802195    T    G    43.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349693    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
8    99140544    rs2447508    G    A    1030    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349693    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1063,78,0
8    99162634    rs7000738    T    C    213.56    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.905;QD=13.35;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349693    GT:AD:DP:GQ:PL    0/1:7,9:16:99:244,0,236
8    99162888    rs4735530    A    G    678.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349693    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:712,51,0
8    99168046    rs7012074    G    A    90.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349693    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
8    99205612    rs3735887    C    T    1566.40    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.292;DB;DP=106;Dels=0.0;FS=2.52;HRun=0;HaplotypeScore=6.9646;MQ=59.78;MQ0=0;MQRankSum=-0.317;QD=14.78;ReadPosRankSum=-0.939;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000341166    GT:AD:DP:GQ:PL    0/1:52,54:106:99:1596,0,1581
8    99208065    rs13264255    T    C    149.74    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=18.72;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341166    GT:AD:DP:GQ:PL    0/1:3,5:8:94.51:180,0,95
8    99208244    rs7010905    G    T    208.09    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.672;QD=9.46;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341166    GT:AD:DP:GQ:PL    0/1:14,8:22:99:238,0,448
8    99234481    rs1901363    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341166    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    99467856    rs10955176    C    T    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517832    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
8    99467902    rs11781372    C    G    84.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.06;ReadPosRankSum=-0.929;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517832    GT:AD:DP:GQ:PL    0/1:8,4:12:99:115,0,302
8    100133706    rs7460625    T    G    1737.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.52;MQ0=0;QD=36.2;SNPEFF_AMINO_ACID_CHANGE=Y413*;SNPEFF_CODON_CHANGE=taT/taG;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_8_100133405_100133990;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000441350    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1771,129,0
8    100286280    rs6987376    T    C    338.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357162    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:372,27,0
8    100287515    .    TGC    T    115.99    PASS    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=3.914;DP=54;FS=13.316;HRun=0;HaplotypeScore=509.0643;IndelType=D;MQ=49.9;MQ0=0;MQRankSum=-4.119;QD=2.11;ReadPosRankSum=-3.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357162    GT:AD:DP:GQ:PL    0/1:47,7:54:99:155,0,999
8    100287517    rs148535809    CT    C    282.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.255;DB;DP=53;FS=0.0;HRun=18;HaplotypeScore=486.3155;IndelType=D;MQ=49.69;MQ0=0;MQRankSum=0.538;QD=5.23;ReadPosRankSum=1.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357162    GT:AD:DP:GQ:PL    1/1:34,13:53:69.90:325,70,0
8    100287565    rs186729358    T    A    126.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.856;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=49.53;MQ0=0;MQRankSum=-1.115;QD=4.85;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357162    GT:AD:DP:GQ:PL    0/1:13,13:26:99:156,0,310
8    100287579    rs7840337    G    C    494.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.23;MQ0=0;QD=24.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357162    GT:AD:DP:GQ:PL    1/1:0,20:20:39.13:527,39,0
8    100493820    rs35543295    C    T    2640.48    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.605;DB;DP=210;Dels=0.0;FS=7.576;HRun=1;HaplotypeScore=3.7797;MQ=59.78;MQ0=0;MQRankSum=0.209;QD=12.57;ReadPosRankSum=-0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357162    GT:AD:DP:GQ:PL    0/1:117,92:210:99:2670,0,3629
8    100844758    rs36074608    T    C    329.50    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.131;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=59.3;MQ0=0;MQRankSum=0.734;QD=9.98;ReadPosRankSum=0.02;SNPEFF_AMINO_ACID_CHANGE=S3164;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_100844597_100844880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357162    GT:AD:DP:GQ:PL    0/1:19,14:33:99:359,0,580
8    100974503    rs73274908    C    T    177.38    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.932;QD=16.13;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    0/1:5,6:11:99:207,0,164
8    100975002    rs6468700    A    G    828.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.103;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=25.09;ReadPosRankSum=-0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    1/1:1,32:33:32.59:861,33,0
8    100994126    rs73274939    A    G    865.23    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.58;MQ0=0;MQRankSum=-0.244;QD=15.73;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    0/1:27,28:55:99:895,0,846
8    100994389    rs6468704    C    T    306.73    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.458;QD=14.61;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    0/1:11,10:21:99:337,0,336
8    100999637    rs28758904    G    A    501.44    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.814;DB;DP=40;Dels=0.0;FS=9.606;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.639;QD=12.54;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    0/1:22,18:40:99:531,0,725
8    101020548    rs3101322    C    G    713.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=37.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519725    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:747,57,0
8    101051024    rs930965    C    A    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
8    101053980    rs922207    C    T    1757.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524182    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1791,132,0
8    101054288    rs3101329    C    T    454.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524182    GT:AD:DP:GQ:PL    1/1:0,13:13:39.08:487,39,0
8    101059662    rs2980542    G    A    1484.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.4658;MQ=59.55;MQ0=0;QD=29.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1517,117,0
8    101064875    rs72676292    A    T    196.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=24.51;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    0/1:2,6:8:47.25:226,0,47
8    101074628    rs2446926    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520117    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    101117554    rs1471294    T    G    900.45    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=67;Dels=0.0;FS=1.162;HRun=0;HaplotypeScore=0.8941;MQ=59.66;MQ0=0;MQRankSum=-0.746;QD=13.44;ReadPosRankSum=-1.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    0/1:34,33:67:99:930,0,1098
8    101117734    rs1471293    A    G    1221.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360863    GT:AD:DP:GQ:PL    1/1:0,37:38:96.29:1255,96,0
8    101149661    rs2446922    G    A    226.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428847    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:259,21,0
8    101149939    rs2453629    G    C    395.12    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.408;QD=15.8;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428847    GT:AD:DP:GQ:PL    0/1:12,13:25:99:425,0,374
8    101153024    rs1460934    G    A    4285.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=I486;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_101152911_101154396;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428847    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4286,313,0
8    101154542    rs1993708    C    T    194.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428847    GT:AD:DP:GQ:PL    1/1:1,7:8:18.06:228,18,0
8    101157227    rs2514689    G    A    297.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.567;DB;DP=22;Dels=0.0;FS=3.245;HRun=2;HaplotypeScore=0.734;MQ=58.95;MQ0=0;MQRankSum=-0.718;QD=13.51;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428847    GT:AD:DP:GQ:PL    0/1:11,11:22:99:327,0,300
8    101163986    rs2453641    T    G    201.12    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=10.59;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353107    GT:AD:DP:GQ:PL    0/1:11,8:19:99:231,0,402
8    101174426    rs16898015    G    A    239.91    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.003;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.466;QD=18.45;ReadPosRankSum=-2.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    0/1:4,9:13:99:270,0,124
8    101177757    rs2248768    C    A    82.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
8    101177766    rs2248767    C    T    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
8    101196824    rs2453656    G    A    372.53    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.234;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.812;QD=17.74;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    0/1:9,12:21:99:403,0,259
8    101203737    rs3802149    T    C    276.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.94;DB;DP=22;Dels=0.0;FS=10.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=12.58;ReadPosRankSum=1.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    0/1:11,11:22:99:307,0,391
8    101206391    rs17335870    G    A    745.41    PASS    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.328;DB;DP=31;Dels=0.0;FS=5.961;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=-0.849;QD=24.05;ReadPosRankSum=0.936;SNPEFF_AMINO_ACID_CHANGE=E331K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_101206340_101206496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    0/1:9,22:31:99:775,0,251
8    101206459    rs56246127    A    AGAC    844.06    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=77.227;IndelType=I;MQ=55.66;MQ0=0;MQRankSum=0.267;QD=38.37;ReadPosRankSum=-0.2;SNPEFF_AMINO_ACID_CHANGE=-354D;SNPEFF_CODON_CHANGE=-/GAC;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_8_101206340_101206496;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    0/1:9,13:22:99:883,0,437
8    101206531    rs17335911    G    A    152.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.426;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.191;QD=12.73;ReadPosRankSum=2.205;SNPEFF_AMINO_ACID_CHANGE=K377;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_101206340_101206912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520508    GT:AD:DP:GQ:PL    0/1:6,6:12:99:183,0,175
8    101225298    rs3098659    C    T    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    0/1:2,2:4:64.04:70,0,64
8    101225838    rs2514682    C    G    93.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:126,12,0
8    101232421    rs141450399    TCAGTACTG    T    649.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=122.2428;IndelType=D;MQ=50.72;MQ0=0;MQRankSum=-1.202;QD=43.32;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    0/1:5,10:15:99:689,0,483
8    101232701    rs2919471    T    C    1427    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1460,111,0
8    101252462    rs1692006    C    T    421.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
8    101252680    rs6511    T    C    2026.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=31.67;SNPEFF_AMINO_ACID_CHANGE=M777T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_101252631_101252999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2060,165,0
8    101253092    .    G    GT    51.61    QDFilter2    AB=0.915;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DP=65;FS=3.206;HRun=15;HaplotypeScore=332.8097;IndelType=I;MQ=55.28;MQ0=0;MQRankSum=-1.139;QD=0.79;ReadPosRankSum=-1.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519424    GT:AD:DP:GQ:PL    0/1:56,5:65:90.64:91,0,309
8    101253184    rs1788190    G    A    926.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.373;DB;DP=62;Dels=0.0;FS=2.177;HRun=0;HaplotypeScore=0.0;MQ=56.56;MQ0=0;MQRankSum=-2.071;QD=14.95;ReadPosRankSum=-0.03;SNPEFF_AMINO_ACID_CHANGE=S905;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_101253119_101254130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251809    GT:AD:DP:GQ:PL    0/1:31,31:62:99:957,0,862
8    101276677    rs1788193    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF19A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524233    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    101281238    rs7014862    C    A    577.86    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.526;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=58.92;MQ0=0;MQRankSum=0.012;QD=13.44;ReadPosRankSum=0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF19A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341084    GT:AD:DP:GQ:PL    0/1:24,19:43:99:608,0,812
8    101534649    rs72679750    T    A    79.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358990    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
8    101620541    rs2469668    T    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520352    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    101625479    rs1078186    C    T    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520661    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
8    101642668    rs7828798    C    T    134.35    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=10.33;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311812    GT:AD:DP:GQ:PL    0/1:7,6:13:99:164,0,241
8    101648110    rs2187017    C    G    1285.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520743    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1319,108,0
8    101648164    rs2187016    C    G    2289.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=D73H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_101648125_101648239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311812    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2322,175,0
8    101648271    rs2155882    G    A    700.62    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.575;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.48;MQ0=0;MQRankSum=-0.222;QD=15.92;ReadPosRankSum=-2.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311812    GT:AD:DP:GQ:PL    0/1:20,23:44:99:731,0,628
8    101648308    rs2155881    T    C    1063.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311812    GT:AD:DP:GQ:PL    1/1:0,32:32:84.23:1097,84,0
8    101661603    rs7016136    T    G    402.76    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=23;Dels=0.0;FS=2.205;HRun=2;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.444;QD=17.51;ReadPosRankSum=1.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311812    GT:AD:DP:GQ:PL    0/1:8,15:23:99:433,0,200
8    101661634    rs12681977    C    T    173.02    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=15.73;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311812    GT:AD:DP:GQ:PL    0/1:4,7:11:99:203,0,134
8    101661803    rs6996544    G    A    73.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520352    GT:AD:DP:GQ:PL    1/1:1,4:5:9.01:106,9,0
8    101718768    rs1693555    A    G    190.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=23.78;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518716    GT:AD:DP:GQ:PL    0/1:2,6:8:50.12:220,0,50
8    101725026    rs34574721    C    CA    628.83    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=51;FS=8.613;HRun=9;HaplotypeScore=220.023;IndelType=I;MQ=58.33;MQ0=0;MQRankSum=0.262;QD=12.33;ReadPosRankSum=-0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517921    GT:AD:DP:GQ:PL    0/1:29,21:51:99:668,0,255
8    101725036    rs68168658    G    GA    289.03    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=42;FS=9.634;HRun=12;HaplotypeScore=235.5009;IndelType=I;MQ=57.97;MQ0=0;MQRankSum=1.043;QD=6.88;ReadPosRankSum=-0.613;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517921    GT:AD:DP:GQ:PL    0/1:28,13:42:99:328,0,275
8    101725251    rs3133575    G    C    273.48    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.712;DB;DP=26;Dels=0.0;FS=5.825;HRun=0;HaplotypeScore=0.8321;MQ=59.28;MQ0=0;MQRankSum=0.922;QD=10.52;ReadPosRankSum=0.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517921    GT:AD:DP:GQ:PL    0/1:16,10:26:99:303,0,522
8    101937370    rs964919    A    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    102504974    rs515622    C    G    1196.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5448;MQ=59.34;MQ0=0;QD=34.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472106    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1230,93,0
8    102555301    rs6984360    A    G    56.06    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=4.31;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251808    GT:AD:DP:GQ:PL    0/1:9,4:13:86.05:86,0,296
8    102585806    rs548564    G    A    806.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.131;DB;DP=36;Dels=0.0;FS=2.309;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=22.39;ReadPosRankSum=-0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251808    GT:AD:DP:GQ:PL    0/1:12,24:36:99:836,0,335
8    102589939    rs3735711    C    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251808    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
8    102704556    rs11787378    C    T    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCALD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520690    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
8    103220351    rs59015244    A    G    1304.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=31.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395912    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1337,114,0
8    103244557    rs3735722    G    A    594.70    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.331;DB;DP=40;Dels=0.0;FS=5.51;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.894;QD=14.87;ReadPosRankSum=-1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251810    GT:AD:DP:GQ:PL    0/1:19,21:40:99:625,0,635
8    103273341    rs72681163    T    C    581.79    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=34;Dels=0.0;FS=1.663;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.284;QD=17.11;ReadPosRankSum=-0.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UBR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521312    GT:AD:DP:GQ:PL    0/1:13,21:34:99:612,0,404
8    103372743    rs6468823    G    A    1547.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UBR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220959    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1580,120,0
8    103563907    rs3808357    G    T    387.31    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=4.468;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=13.83;ReadPosRankSum=-0.829;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_103563800_103564275;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285402    GT:AD:DP:GQ:PL    0/1:15,13:28:99:417,0,460
8    103564435    rs76861036    A    G    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285402    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
8    103572992    rs3018444    C    G    252.30    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=32;Dels=0.0;FS=11.088;HRun=0;HaplotypeScore=1.9644;MQ=48.43;MQ0=0;MQRankSum=1.343;QD=7.88;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=P211;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_103572680_103573216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285402    GT:AD:DP:GQ:PL    0/1:20,12:32:99:282,0,439
8    103573001    rs3018445    C    G    235    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.359;DB;DP=36;Dels=0.0;FS=4.107;HRun=0;HaplotypeScore=1.9912;MQ=49.05;MQ0=0;MQRankSum=1.449;QD=6.53;ReadPosRankSum=1.021;SNPEFF_AMINO_ACID_CHANGE=P214;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_103572680_103573216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285402    GT:AD:DP:GQ:PL    0/1:23,13:36:99:265,0,440
8    103573006    rs2916569    G    A    882.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9912;MQ=50.08;MQ0=0;QD=23.85;SNPEFF_AMINO_ACID_CHANGE=S216N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_103572680_103573216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285402    GT:AD:DP:GQ:PL    1/1:0,37:37:75.22:916,75,0
8    103573019    rs143802899    CTGCAGCCCCTGCAACCCG    C    1126.48    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=4.107;DB;DP=43;FS=11.812;HRun=0;HaplotypeScore=986.1488;IndelType=D;MQ=51.32;MQ0=0;MQRankSum=-0.798;QD=26.2;ReadPosRankSum=-1.304;SNPEFF_AMINO_ACID_CHANGE=CSPCNP14-;SNPEFF_CODON_CHANGE=tgcagcccctgcaacccg/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_8_103572989_103573245;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518835    GT:AD:DP:GQ:PL    0/1:27,16:43:99:1166,0,2017
8    103573086    rs11995900    T    C    768.26    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.033;DB;DP=46;Dels=0.0;FS=2.444;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=-0.011;QD=16.7;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=F243L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_103572680_103573216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285402    GT:AD:DP:GQ:PL    0/1:20,26:46:99:798,0,605
8    103573329    rs2289033    C    G    41.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285402    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
8    103662219    rs3191333    G    A    90.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285407    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
8    103841861    rs2304346    G    A    95.85    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=14;Dels=0.0;FS=6.113;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.778;QD=6.85;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523071    GT:AD:DP:GQ:PL    0/1:10,4:14:99:126,0,355
8    103846823    rs71303443    A    AAAC    401.80    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=46.7654;IndelType=I;MQ=57.23;MQ0=0;MQRankSum=0.811;QD=30.91;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520402    GT:AD:DP:GQ:PL    0/1:8,5:13:99:441,0,243
8    103851052    rs1062048    T    C    487.20    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.349;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.723;QD=10.37;ReadPosRankSum=0.054;SNPEFF_AMINO_ACID_CHANGE=A123;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_103850972_103851144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337198    GT:AD:DP:GQ:PL    0/1:28,19:47:99:517,0,793
8    103852064    rs142047571    TA    T    181.86    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=3.232;DB;DP=30;FS=9.118;HRun=9;HaplotypeScore=77.7468;IndelType=D;MQ=60.36;MQ0=0;MQRankSum=0.469;QD=6.06;ReadPosRankSum=0.173;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518353    GT:AD:DP:GQ:PL    0/1:19,11:30:99:221,0,473
8    104081085    rs9992    G    C    275.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518959    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
8    104178577    rs10955311    A    C    280.89    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.554;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.209;QD=10.4;ReadPosRankSum=0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297574    GT:AD:DP:GQ:PL    0/1:16,11:27:99:311,0,580
8    104312341    rs3736047    A    G    513.99    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.853;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.012;QD=16.58;ReadPosRankSum=2.005;SNPEFF_AMINO_ACID_CHANGE=E2;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_104312184_104312512;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358755    GT:AD:DP:GQ:PL    0/1:14,17:31:99:544,0,415
8    104312432    rs827528    A    G    631.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.13;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=13.73;ReadPosRankSum=0.765;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_8_104312428_104312512;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000523739    GT:AD:DP:GQ:PL    0/1:23,23:46:99:661,0,735
8    104331088    rs3104026    G    C    230.18    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=20.93;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358755    GT:AD:DP:GQ:PL    0/1:4,7:11:99:260,0,133
8    104336672    rs827550    G    A    118.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=9.88;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358755    GT:AD:DP:GQ:PL    0/1:6,6:12:99:149,0,206
8    104337096    rs3808554    A    G    504.03    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=35;Dels=0.0;FS=1.387;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.315;QD=14.4;ReadPosRankSum=0.182;SNPEFF_AMINO_ACID_CHANGE=L199;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_104336709_104337726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539487    GT:AD:DP:GQ:PL    0/1:19,16:35:99:534,0,639
8    104337367    rs3808553    A    C    1325.83    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=3.257;DB;DP=90;Dels=0.0;FS=0.967;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.729;QD=14.73;ReadPosRankSum=0.51;SNPEFF_AMINO_ACID_CHANGE=M290L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_104336709_104337726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539487    GT:AD:DP:GQ:PL    0/1:49,41:90:99:1356,0,1621
8    104337848    rs12707777    A    T    138.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.268;QD=13.85;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358755    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,166
8    104337924    rs149949925    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358755    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    104343686    rs1053917    G    A    1340.87    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=3.066;DB;DP=67;Dels=0.0;FS=4.985;HRun=0;HaplotypeScore=1.5616;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=20.01;ReadPosRankSum=0.871;SNPEFF_AMINO_ACID_CHANGE=P385;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_104343569_104344120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540287    GT:AD:DP:GQ:PL    0/1:23,44:67:99:1371,0,687
8    104343822    rs2934725    A    G    194.08    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.747;QD=24.26;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523933    GT:AD:DP:GQ:PL    0/1:1,7:8:10.48:224,0,10
8    104384988    rs13278335    G    A    772.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTHRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297577    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:806,60,0
8    104388276    rs6468870    A    T    73.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTHRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297577    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:106,9,0
8    104394512    rs28437723    G    C    216    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTHRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297577    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
8    104394744    rs3098233    T    C    3860.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_AMINO_ACID_CHANGE=G202;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_104394686_104394824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTHRC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297577    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3860,289,0
8    104412474    rs11345830    CA    C    230.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=41.2203;IndelType=D;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523701    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
8    104412517    rs35225263    A    T    484.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523701    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:518,39,0
8    104412830    rs10103739    C    T    520.05    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=3.612;DB;DP=39;Dels=0.0;FS=8.868;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.87;QD=13.33;ReadPosRankSum=0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523701    GT:AD:DP:GQ:PL    0/1:23,16:39:99:550,0,707
8    104412935    rs2241778    C    T    203.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523701    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:236,18,0
8    104427359    rs3134295    A    C    1401    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.25;MQ0=0;QD=35.03;SNPEFF_AMINO_ACID_CHANGE=R47S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_104426942_104427744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297579    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1434,111,0
8    104433548    rs72675463    G    A    224.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.74;DB;DP=13;Dels=0.0;FS=2.932;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.74;QD=17.26;ReadPosRankSum=-1.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388778    GT:AD:DP:GQ:PL    0/1:3,9:13:94.54:254,0,95
8    104438497    rs17804088    A    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388778    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    104452199    rs3098218    G    A    248.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297579    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
8    104452313    rs35579301    C    CAAAG    3048.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=114.2306;IndelType=I;MQ=53.71;MQ0=0;QD=78.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297579    GT:AD:DP:GQ:PL    1/1:2,35:39:99:3091,117,0
8    104452554    rs36073721    A    ATAT    2096    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=138.4182;IndelType=I;MQ=54.9;MQ0=0;QD=51.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521999    GT:AD:DP:GQ:PL    1/1:8,33:41:99:2138,99,0
8    104513343    rs35745796    C    G    384.79    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.016;DB;DP=49;Dels=0.0;FS=4.316;HRun=1;HaplotypeScore=1.9991;MQ=55.11;MQ0=0;MQRankSum=-1.039;QD=7.85;ReadPosRankSum=0.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329869    GT:AD:DP:GQ:PL    0/1:27,22:49:99:415,0,747
8    104513395    rs36056848    T    C    263.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.364;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.182;QD=11.98;ReadPosRankSum=0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329869    GT:AD:DP:GQ:PL    0/1:11,11:22:99:294,0,321
8    104864054    rs2935297    G    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:2,2:4:64.04:67,0,64
8    104897391    rs72681354    C    T    114.33    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=12.7;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:4,5:9:99:144,0,143
8    104922519    rs112118632    C    CT    485.24    PASS    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=1.686;DB;DP=97;FS=0.0;HRun=14;HaplotypeScore=403.7679;IndelType=I;MQ=56.81;MQ0=0;MQRankSum=0.632;QD=5.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:65,29:97:99:524,0,496
8    104930646    .    C    CT    349.78    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.135;DP=21;FS=0.0;HRun=11;HaplotypeScore=98.0411;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=0.611;QD=16.66;ReadPosRankSum=1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:6,15:21:55.22:389,0,55
8    104933763    rs7841847    T    G    73.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.68;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378492    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:103,0,65
8    104934028    rs6468897    G    A    1138.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378492    GT:AD:DP:GQ:PL    1/1:0,32:33:87.28:1171,87,0
8    104940210    rs17817023    T    G    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=6.73;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:3,3:6:70.37:70,0,112
8    104949098    rs72681385    C    T    147.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=12.32;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:6,6:12:99:178,0,136
8    104949194    rs113546477    T    C    31.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.78;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:2,2:4:61.11:61,0,66
8    104973378    rs35964420    T    G    1059.93    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.863;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9198;MQ=59.58;MQ0=0;MQRankSum=-1.671;QD=19.27;ReadPosRankSum=-1.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:20,35:55:99:1090,0,568
8    104973463    rs72683103    T    C    223.64    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.456;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.912;QD=11.18;ReadPosRankSum=0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:11,9:20:99:254,0,390
8    104987771    rs72683111    G    A    90.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=6.5;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:10,4:14:99:121,0,375
8    105001366    rs17817645    C    T    77.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.95;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,108
8    105001724    rs17817675    A    G    546.70    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.297;DB;DP=30;Dels=0.0;FS=3.081;HRun=0;HaplotypeScore=1.9106;MQ=60.0;MQ0=0;MQRankSum=-1.297;QD=18.22;ReadPosRankSum=-0.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:13,17:30:99:577,0,440
8    105001770    rs72683126    C    G    100.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=8.37;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:6,6:12:99:130,0,210
8    105001777    rs72683127    C    T    109.85    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,145
8    105025934    rs34555846    T    C    77.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=57.05;MQ0=0;MQRankSum=-0.937;QD=9.65;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:4,4:8:99:107,0,106
8    105053383    rs10086223    C    T    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    105081080    rs13280640    G    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:74,0,31
8    105105846    rs55788818    C    T    1432.18    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=4.958;DB;DP=89;Dels=0.0;FS=7.719;HRun=0;HaplotypeScore=1.8661;MQ=59.79;MQ0=0;MQRankSum=-0.718;QD=16.09;ReadPosRankSum=0.743;SNPEFF_AMINO_ACID_CHANGE=R1030C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_105105699_105105871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408894    GT:AD:DP:GQ:PL    0/1:43,46:89:99:1462,0,1206
8    105256966    rs79595933    T    A    169.75    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.055;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.558;QD=9.99;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:11,6:17:99:200,0,408
8    105257488    rs1031230    G    A    32.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.41;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:3,2:5:62.06:62,0,107
8    105263248    rs1374519    C    T    544.65    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=2.002;QD=11.35;ReadPosRankSum=0.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262231    GT:AD:DP:GQ:PL    0/1:25,23:48:99:575,0,834
8    105263751    rs2252152    T    A    242.07    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.344;QD=9.31;ReadPosRankSum=1.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408894    GT:AD:DP:GQ:PL    0/1:16,10:26:99:272,0,575
8    105367096    rs2458431    T    C    537.90    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.361;DB;DP=35;Dels=0.0;FS=8.074;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.513;QD=15.37;ReadPosRankSum=0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TM7SF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297581    GT:AD:DP:GQ:PL    0/1:16,19:35:99:568,0,525
8    105393687    rs2253336    G    A    254.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351513    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
8    105393816    rs11779762    C    G    38.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.72;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351513    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:68,0,20
8    105440462    rs2246815    A    G    52.34    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=2.034;QD=4.36;ReadPosRankSum=-0.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519217    GT:AD:DP:GQ:PL    0/1:9,3:12:82.33:82,0,322
8    105459793    rs7821992    C    A    106.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=1.8874;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=11.83;ReadPosRankSum=-2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351513    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,174
8    105463690    rs2669429    A    G    171.75    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DB;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=11.45;ReadPosRankSum=0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351513    GT:AD:DP:GQ:PL    0/1:8,7:15:99:202,0,250
8    105521088    .    G    A    205.82    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DP=16;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=12.86;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276654    GT:AD:DP:GQ:PL    0/1:9,7:16:99:236,0,311
8    106430676    rs1383592    G    A    259.57    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.95;MQ0=0;MQRankSum=0.627;QD=18.54;ReadPosRankSum=0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407775    GT:AD:DP:GQ:PL    0/1:6,8:14:99:290,0,158
8    106431029    rs11783971    A    G    282.74    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.519;DB;DP=40;Dels=0.0;FS=2.795;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.244;QD=7.07;ReadPosRankSum=0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407775    GT:AD:DP:GQ:PL    0/1:21,19:40:99:313,0,680
8    106431030    rs59607297    T    C    301.42    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.194;DB;DP=40;Dels=0.0;FS=2.795;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.758;QD=7.54;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407775    GT:AD:DP:GQ:PL    0/1:21,19:40:99:331,0,679
8    106431290    rs139543559    CA    C    533.63    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=4.588;DB;DP=55;FS=0.0;HRun=7;HaplotypeScore=134.9744;IndelType=D;MQ=60.38;MQ0=0;MQRankSum=-1.025;QD=9.7;ReadPosRankSum=0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407775    GT:AD:DP:GQ:PL    0/1:30,25:55:99:573,0,897
8    106431589    rs112841122    T    TA    652.11    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.488;DB;DP=71;FS=2.512;HRun=7;HaplotypeScore=187.9424;IndelType=I;MQ=60.57;MQ0=0;MQRankSum=-0.409;QD=9.18;ReadPosRankSum=-0.934;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-127H5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518180    GT:AD:DP:GQ:PL    0/1:46,25:71:99:691,0,836
8    106456683    rs11990012    A    G    431.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.65;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=0.717;QD=12.33;ReadPosRankSum=-0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407775    GT:AD:DP:GQ:PL    0/1:20,15:35:99:461,0,611
8    106573524    rs143111271    CA    C    646.37    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=4.857;DB;DP=57;FS=1.71;HRun=5;HaplotypeScore=200.8273;IndelType=D;MQ=60.19;MQ0=0;MQRankSum=-0.781;QD=11.34;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407775    GT:AD:DP:GQ:PL    0/1:32,25:57:99:685,0,1025
8    106573578    rs3735953    C    T    1628.88    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.203;DB;DP=117;Dels=0.0;FS=8.22;HRun=2;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.514;QD=13.92;ReadPosRankSum=-0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407775    GT:AD:DP:GQ:PL    0/1:59,58:117:99:1659,0,1895
8    106573919    rs12216772    C    T    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524235    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:71,0,30
8    107371924    rs2022982    C    A    792    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=58;Dels=0.0;FS=10.473;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.386;QD=13.66;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445937    GT:AD:DP:GQ:PL    0/1:32,26:58:99:822,0,952
8    107531095    .    GA    G    121.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DP=14;FS=0.0;HRun=8;HaplotypeScore=34.5855;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.406;QD=8.7;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442977    GT:AD:DP:GQ:PL    0/1:7,7:14:99:161,0,212
8    107531421    .    T    C    554.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.802;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=11.09;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442977    GT:AD:DP:GQ:PL    0/1:30,20:50:99:584,0,1109
8    107710044    rs2627788    T    A    3701.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2524;MQ=59.14;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312046    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3701,283,0
8    107738673    .    T    G    160.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.13;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.581;QD=11.43;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297447    GT:AD:DP:GQ:PL    0/1:8,6:14:99:190,0,267
8    107754583    rs1784468    T    G    312.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.515;QD=17.34;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297447    GT:AD:DP:GQ:PL    0/1:6,12:18:99:342,0,200
8    107782335    rs11996457    G    A    360.70    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.739;QD=8.39;ReadPosRankSum=-1.361;SNPEFF_AMINO_ACID_CHANGE=S28;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_107781751_107782473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311955    GT:AD:DP:GQ:PL    0/1:29,14:43:99:391,0,969
8    107782395    rs11996466    G    A    272    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=39;Dels=0.0;FS=1.394;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.893;QD=6.97;ReadPosRankSum=0.83;SNPEFF_AMINO_ACID_CHANGE=S8;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_107781751_107782473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311955    GT:AD:DP:GQ:PL    0/1:25,14:39:99:302,0,679
8    108306487    rs6469108    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297450    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    108335042    rs7009753    C    T    98.61    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.96;ReadPosRankSum=-1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297450    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,177
8    108359026    rs10156232    G    A    227.48    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.147;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.419;QD=8.43;ReadPosRankSum=0.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520033    GT:AD:DP:GQ:PL    0/1:16,11:27:99:257,0,583
8    108509332    rs41323951    C    G    33.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.04;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297450    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:63,0,33
8    108970264    rs35069883    T    TCA    1946.71    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.876;DB;DP=76;FS=0.0;HRun=0;HaplotypeScore=195.4011;IndelType=I;MQ=60.28;MQ0=0;MQRankSum=-1.147;QD=25.61;ReadPosRankSum=0.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520026    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1986,0,1148
8    108970367    rs601558    A    G    1241.16    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.173;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.959;QD=13.35;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=L119P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_108970308_108970496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000517939    GT:AD:DP:GQ:PL    0/1:50,43:93:99:1271,0,1574
8    109215100    rs619227    C    A    458.18    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.664;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.317;QD=19.09;ReadPosRankSum=-0.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519517    GT:AD:DP:GQ:PL    0/1:10,14:24:99:488,0,344
8    109215368    rs630492    T    C    607.40    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.758;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=58.69;MQ0=0;MQRankSum=1.494;QD=14.13;ReadPosRankSum=-0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519517    GT:AD:DP:GQ:PL    0/1:22,21:43:99:637,0,690
8    109215910    rs617285    T    C    41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=10.25;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220849    GT:AD:DP:GQ:PL    0/1:1,3:4:26.22:71,0,26
8    109240695    rs596747    T    A    110.90    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.84;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220849    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,101
8    109253929    rs589347    T    A    449.16    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.178;DB;DP=38;Dels=0.0;FS=2.258;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.892;QD=11.82;ReadPosRankSum=0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518634    GT:AD:DP:GQ:PL    0/1:20,18:38:99:479,0,677
8    109254003    rs667742    T    C    1315.44    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=2.386;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.612;MQ=59.81;MQ0=0;MQRankSum=0.938;QD=13.15;ReadPosRankSum=2.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518634    GT:AD:DP:GQ:PL    0/1:54,46:100:99:1345,0,1657
8    109254262    rs615233    C    T    134.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.581;QD=9.61;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220849    GT:AD:DP:GQ:PL    0/1:8,6:14:99:165,0,280
8    109260776    rs4735053    A    G    956.91    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.085;DB;DP=78;Dels=0.0;FS=3.107;HRun=0;HaplotypeScore=0.8321;MQ=59.7;MQ0=0;MQRankSum=0.161;QD=12.27;ReadPosRankSum=-0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=EIF3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220849    GT:AD:DP:GQ:PL    0/1:39,38:78:99:987,0,1164
8    109498717    rs34429579    C    CT    111.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=35;FS=0.0;HRun=17;HaplotypeScore=343.1402;IndelType=I;MQ=46.25;MQ0=0;MQRankSum=0.0;QD=3.19;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220853    GT:AD:DP:GQ:PL    1/1:18,12:35:3.29:151,3,0
8    110293184    rs11292457    TA    T    175.12    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=11;FS=7.404;HRun=9;HaplotypeScore=26.0941;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=15.92;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239690    GT:AD:DP:GQ:PL    0/1:2,9:11:36.23:214,0,36
8    110302047    rs2980619    T    G    938.54    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=1.483;DB;DP=61;Dels=0.0;FS=0.998;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.644;QD=15.39;ReadPosRankSum=-0.499;SNPEFF_AMINO_ACID_CHANGE=L223F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_110301980_110302162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDCD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427660    GT:AD:DP:GQ:PL    0/1:28,33:61:99:969,0,827
8    110396078    rs13260707    T    C    71.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378402    GT:AD:DP:GQ:PL    1/1:0,3:3:9:104,9,0
8    110455176    rs79040731    T    G    672.40    FSFilter60;HaplotypeScoreFilter13    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-9.24;DB;DP=152;Dels=0.0;FS=144.539;HRun=2;HaplotypeScore=45.9119;MQ=47.35;MQ0=0;MQRankSum=-6.909;QD=4.42;ReadPosRankSum=2.253;SNPEFF_AMINO_ACID_CHANGE=G1465;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_110455175_110455345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378402    GT:AD:DP:GQ:PL    0/1:74,77:152:99:702,0,2346
8    110455184    .    C    T    602.71    FSFilter60;HaplotypeScoreFilter13    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-9.073;DP=163;Dels=0.01;FS=166.568;HRun=4;HaplotypeScore=42.7114;MQ=47.69;MQ0=0;MQRankSum=-6.446;QD=3.68;ReadPosRankSum=2.297;SNPEFF_AMINO_ACID_CHANGE=S1468F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_110455175_110455345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378402    GT:AD:DP:GQ:PL    0/1:92,70:163:99:633,0,2858
8    110464510    rs72687022    G    A    791.80    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.332;DB;DP=69;Dels=0.0;FS=1.018;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.44;QD=11.48;ReadPosRankSum=-0.702;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1L1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000378402    GT:AD:DP:GQ:PL    0/1:43,26:69:99:822,0,1209
8    110516533    rs72687049    C    T    1241.63    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=80;Dels=0.0;FS=10.171;HRun=2;HaplotypeScore=3.525;MQ=59.71;MQ0=0;MQRankSum=-0.587;QD=15.52;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKHD1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533183    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1272,0,1126
8    110575963    rs56221516    C    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527709    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,72
8    110591853    .    G    T    36.09    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=-0.727;QD=7.22;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYBU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527664    GT:AD:DP:GQ:PL    0/1:1,4:5:12.70:66,0,13
8    113253954    rs61753736    A    G    1168.14    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7234;MQ=60.0;MQ0=0;MQRankSum=0.073;QD=11.57;ReadPosRankSum=0.809;SNPEFF_AMINO_ACID_CHANGE=L2758P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_113253949_113254014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339701    GT:AD:DP:GQ:PL    0/1:56,45:101:99:1198,0,1610
8    113254087    rs28698529    G    A    422.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:455,36,0
8    113318612    rs918151    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492692    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    113358369    rs141293957    G    A    1541.46    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.384;DB;DP=141;Dels=0.0;FS=3.199;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=-0.517;QD=10.93;ReadPosRankSum=1.005;SNPEFF_AMINO_ACID_CHANGE=S1403;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_113358326_113358442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339701    GT:AD:DP:GQ:PL    0/1:85,56:141:99:1571,0,2459
8    113420495    rs35988509    TG    T    1777.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=3;HaplotypeScore=138.3499;IndelType=D;MQ=60.65;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1820,147,0
8    113484935    rs12155677    C    T    719.97    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=4.268;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7319;MQ=59.55;MQ0=0;MQRankSum=-0.895;QD=14.12;ReadPosRankSum=-0.122;SNPEFF_AMINO_ACID_CHANGE=A1100;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_113484820_113484936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339701    GT:AD:DP:GQ:PL    0/1:26,25:51:99:750,0,693
8    113529233    rs2853244    A    G    790.74    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.851;DB;DP=47;Dels=0.0;FS=1.388;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.353;QD=16.82;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    0/1:21,26:47:99:821,0,638
8    113585637    rs7014796    A    G    191.97    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.72;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=12.8;ReadPosRankSum=-0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    0/1:8,7:15:99:222,0,293
8    113599196    rs7463547    T    C    32.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.63;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    0/1:5,2:7:62.39:62,0,174
8    113599207    rs7460155    A    G    48.12    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=4.81;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    0/1:7,3:10:78.11:78,0,243
8    113599612    rs7463638    T    C    73.93    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.48;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:104,0,31
8    113649402    rs4433178    T    C    37.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.59;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    0/1:2,3:5:67.92:68,0,71
8    113662299    rs6992564    T    G    742.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:775,57,0
8    113662768    rs4633091    C    G    95.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
8    113697567    rs7839990    A    G    558.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:591,51,0
8    113842039    rs10106945    G    A    254.34    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.246;QD=12.11;ReadPosRankSum=-1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    0/1:11,10:21:99:284,0,358
8    113959958    rs12114303    G    C    446.18    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=23.48;ReadPosRankSum=0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    0/1:5,14:19:99:476,0,149
8    114419477    rs6982808    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
8    114419690    rs34678450    A    G    1161.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=29.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    1/1:0,40:40:93.27:1195,93,0
8    114419877    rs34698916    C    T    209.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297405    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
8    116430861    rs1180628    C    A    224.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220888    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:257,21,0
8    116599199    rs2293889    T    G    1483.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220888    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1516,117,0
8    116600008    rs71530811    T    C    135.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.84;MQ0=0;MQRankSum=-1.422;QD=13.56;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220888    GT:AD:DP:GQ:PL    0/1:4,6:10:86.98:166,0,87
8    116635611    rs2721938    C    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451156    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
8    116635688    rs2737219    G    A    161.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451156    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:194,15,0
8    116635872    rs35329862    T    TA    1213.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=1;HaplotypeScore=88.0897;IndelType=I;MQ=61.15;MQ0=0;QD=43.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220888    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1256,84,0
8    116635942    rs2721939    C    T    537.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.43;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220888    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:570,42,0
8    117669343    rs77386399    C    T    74.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.97;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517974    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:105,0,69
8    117782385    rs4514005    C    T    289.65    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.244;QD=17.04;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309822    GT:AD:DP:GQ:PL    0/1:7,10:17:99:320,0,201
8    117783908    rs34845194    A    C    906.58    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.953;DB;DP=58;Dels=0.0;FS=1.058;HRun=0;HaplotypeScore=0.9159;MQ=59.6;MQ0=0;MQRankSum=0.008;QD=15.63;ReadPosRankSum=0.319;SNPEFF_AMINO_ACID_CHANGE=R193;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_117783695_117786923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309822    GT:AD:DP:GQ:PL    0/1:28,30:58:99:937,0,887
8    117864217    rs1050838    A    G    1092.66    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.518;DB;DP=72;Dels=0.0;FS=10.276;HRun=1;HaplotypeScore=3.2367;MQ=60.0;MQ0=0;MQRankSum=-0.13;QD=15.18;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=A25;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_117864187_117864490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000518055    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1123,0,1006
8    117950758    rs111477672    G    T    68.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.17;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=Q92H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_117950438_117950806;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378279    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:99,0,31
8    118165149    rs6469675    A    G    497.94    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.047;DB;DP=46;Dels=0.0;FS=1.253;HRun=3;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=10.82;ReadPosRankSum=0.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427715    GT:AD:DP:GQ:PL    0/1:26,20:46:99:528,0,841
8    118169718    rs924922    G    A    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.79;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518521    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,107
8    118170261    rs10505312    T    C    104.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.44;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524274    GT:AD:DP:GQ:PL    0/1:2,4:6:67.18:135,0,67
8    118183551    rs2464592    G    A    205.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427715    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
8    118185041    rs2466295    C    T    781.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519688    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:815,60,0
8    118533382    rs7015216    T    A    36.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.1;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297347    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:66,0,70
8    118811806    rs138458841    CT    C    128.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=61.5973;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=10.67;ReadPosRankSum=1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437196    GT:AD:DP:GQ:PL    0/1:4,8:12:34.03:167,0,34
8    118817272    rs182912081    G    A    154.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=19.27;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378204    GT:AD:DP:GQ:PL    0/1:3,5:8:96.05:184,0,96
8    118819578    rs7837891    C    T    388.72    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.598;DB;DP=37;Dels=0.0;FS=1.448;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.782;QD=10.51;ReadPosRankSum=-0.445;SNPEFF_AMINO_ACID_CHANGE=E587;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_118819456_118819616;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378204    GT:AD:DP:GQ:PL    0/1:21,16:37:99:419,0,660
8    118830820    rs10955837    T    C    276.17    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.81;DB;DP=28;Dels=0.0;FS=2.231;HRun=0;HaplotypeScore=1.367;MQ=58.33;MQ0=0;MQRankSum=-0.967;QD=9.86;ReadPosRankSum=-0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378204    GT:AD:DP:GQ:PL    0/1:13,15:28:99:306,0,425
8    118830894    rs4876757    C    T    93.78    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-1.307;QD=10.42;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378204    GT:AD:DP:GQ:PL    0/1:5,4:9:99:124,0,170
8    118834952    rs4355803    C    T    194.31    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=14.95;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378204    GT:AD:DP:GQ:PL    0/1:5,8:13:99:224,0,168
8    118842744    rs9642837    C    A    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.43;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378204    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,152
8    118847782    rs11546829    G    A    755.72    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=49;Dels=0.0;FS=1.191;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.443;QD=15.42;ReadPosRankSum=0.485;SNPEFF_AMINO_ACID_CHANGE=C355;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_118847683_118847790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378204    GT:AD:DP:GQ:PL    0/1:25,24:49:99:786,0,727
8    118849146    rs17452694    T    C    37.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378204    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:67,0,24
8    119209773    rs2514743    C    T    547.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524796    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:581,45,0
8    119391791    rs5020517    T    C    2102.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1445;MQ=58.59;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=L157;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_119390227_119391939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314727    GT:AD:DP:GQ:PL    1/1:0,62:63:99:2136,160,0
8    119451865    rs11398637    T    TC    198.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=9.0627;IndelType=I;MQ=60.0;MQ0=0;QD=39.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314727    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
8    119451983    rs34337924    ATGT    A    1526.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=185.833;IndelType=D;MQ=54.65;MQ0=0;QD=47.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314727    GT:AD:DP:GQ:PL    1/1:0,32:32:96.33:1569,96,0
8    119452014    rs76954718    C    A    529.82    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.47;MQ0=0;MQRankSum=-0.155;QD=13.25;ReadPosRankSum=-0.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314727    GT:AD:DP:GQ:PL    0/1:21,19:40:99:560,0,614
8    119452424    rs6985503    A    G    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314727    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
8    119774200    rs10101357    T    G    2530.13    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=3.068;DB;DP=169;Dels=0.0;FS=1.893;HRun=1;HaplotypeScore=3.6612;MQ=59.56;MQ0=0;MQRankSum=0.014;QD=14.97;ReadPosRankSum=-1.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS26P35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480579    GT:AD:DP:GQ:PL    0/1:83,86:169:99:2560,0,2399
8    119941173    rs3134046    A    G    1180.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297350    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1214,90,0
8    119964052    rs2073618    G    C    78.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=11.28;ReadPosRankSum=-1.754;SNPEFF_AMINO_ACID_CHANGE=N3K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_119964031_119964439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297350    GT:AD:DP:GQ:PL    0/1:4,3:7:74.49:109,0,74
8    120079748    rs2465383    A    G    300.61    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.033;QD=13.66;ReadPosRankSum=-0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COLEC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332843    GT:AD:DP:GQ:PL    0/1:12,10:22:99:331,0,428
8    120114539    .    C    CTTTTATTTTAA    1016.94    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.969;DP=23;FS=4.393;HRun=0;HaplotypeScore=196.9655;IndelType=I;MQ=52.78;MQ0=0;MQRankSum=-2.901;QD=44.21;ReadPosRankSum=-0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COLEC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332843    GT:AD:DP:GQ:PL    0/1:16,7:23:99:1056,0,1175
8    120428758    rs56013326    G    A    261.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=24;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.646;QD=10.91;ReadPosRankSum=0.277;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520082    GT:AD:DP:GQ:PL    0/1:12,12:24:99:292,0,273
8    120429024    rs2279112    G    A    208.60    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=16.05;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=R42Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120428984_120429209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOV;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259526    GT:AD:DP:GQ:PL    0/1:5,8:13:99:239,0,105
8    120429282    rs7834596    G    T    35.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.92;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259526    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:66,0,34
8    120434853    rs1461690    T    C    36.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259526    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,112
8    120575184    rs1058913    G    A    412.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.245;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.257;QD=12.14;ReadPosRankSum=-0.81;SNPEFF_AMINO_ACID_CHANGE=F413;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120575097_120575253;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522167    GT:AD:DP:GQ:PL    0/1:17,17:34:99:443,0,543
8    120575313    rs16892758    T    A    132.53    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=10.19;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075322    GT:AD:DP:GQ:PL    0/1:5,8:13:99:163,0,145
8    120576925    rs13252720    T    A    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075322    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
8    120577219    rs118175182    A    T    239.26    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.077;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=7.04;ReadPosRankSum=-1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075322    GT:AD:DP:GQ:PL    0/1:23,11:34:99:269,0,737
8    120580640    rs2243749    G    T    116.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518109    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
8    120582871    rs16892786    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518109    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    120583148    rs2305125    G    A    834.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518109    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:868,63,0
8    120596023    rs10283100    A    G    2642.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=S132P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120595957_120596044;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522167    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2675,199,0
8    120602908    rs935359    C    T    979.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075322    GT:AD:DP:GQ:PL    1/1:0,33:33:72.24:1013,72,0
8    120602914    rs935360    C    T    445.85    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.766;DB;DP=31;Dels=0.0;FS=6.327;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.409;QD=14.38;ReadPosRankSum=1.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075322    GT:AD:DP:GQ:PL    0/1:14,17:31:99:476,0,339
8    120606023    rs61753744    C    T    1781.80    PASS    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.35;DB;DP=162;Dels=0.0;FS=0.613;HRun=0;HaplotypeScore=0.9734;MQ=59.6;MQ0=0;MQRankSum=0.065;QD=11.0;ReadPosRankSum=-0.017;SNPEFF_AMINO_ACID_CHANGE=R346;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120605992_120606100;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427067    GT:AD:DP:GQ:PL    0/1:97,65:162:99:1812,0,2985
8    120613565    rs145766537    G    C    521.48    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=22.67;ReadPosRankSum=0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075322    GT:AD:DP:GQ:PL    0/1:8,15:23:99:551,0,257
8    120613747    rs2289888    C    T    628.15    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=5.177;DB;DP=51;Dels=0.0;FS=9.026;HRun=0;HaplotypeScore=0.9894;MQ=59.55;MQ0=0;MQRankSum=0.956;QD=12.32;ReadPosRankSum=-1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075322    GT:AD:DP:GQ:PL    0/1:28,23:51:99:658,0,697
8    120613822    rs2289889    C    T    231.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.81;QD=11.59;ReadPosRankSum=0.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075322    GT:AD:DP:GQ:PL    0/1:12,8:20:99:262,0,374
8    120790304    rs1509348    T    C    630.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.848;DB;DP=60;Dels=0.0;FS=3.613;HRun=0;HaplotypeScore=0.0;MQ=60.18;MQ0=0;MQRankSum=-0.128;QD=10.51;ReadPosRankSum=0.505;SNPEFF_AMINO_ACID_CHANGE=T773;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120790259_120790369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:36,24:60:99:660,0,1082
8    120790378    rs111770184    G    GA    226.16    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.08;DB;DP=31;FS=0.0;HRun=8;HaplotypeScore=78.937;IndelType=I;MQ=60.69;MQ0=0;MQRankSum=0.377;QD=7.3;ReadPosRankSum=-0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:21,10:31:99:265,0,386
8    120793296    rs7002501    C    T    690.44    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=57.79;MQ0=0;MQRankSum=0.295;QD=13.03;ReadPosRankSum=1.099;SNPEFF_AMINO_ACID_CHANGE=Q750;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120793293_120793433;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:24,29:53:99:720,0,705
8    120795607    rs13268676    G    A    1288.14    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.158;DB;DP=91;Dels=0.0;FS=1.772;HRun=0;HaplotypeScore=1.9092;MQ=59.75;MQ0=0;MQRankSum=-0.839;QD=14.16;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:43,48:91:99:1318,0,1284
8    120797598    rs117733285    C    T    178.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.205;QD=14.88;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523734    GT:AD:DP:GQ:PL    0/1:6,6:12:99:209,0,182
8    120801805    rs6469846    C    T    765.67    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DB;DP=49;Dels=0.0;FS=2.754;HRun=1;HaplotypeScore=1.7998;MQ=59.53;MQ0=0;MQRankSum=-0.211;QD=15.63;ReadPosRankSum=1.759;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523734    GT:AD:DP:GQ:PL    0/1:22,27:49:99:796,0,641
8    120803637    rs9297605    C    G    534.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.018;DB;DP=48;Dels=0.0;FS=6.457;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.45;QD=11.13;ReadPosRankSum=-0.868;SNPEFF_AMINO_ACID_CHANGE=S447T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120803564_120803699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:28,20:48:99:564,0,895
8    120803654    rs11996390    C    T    427.77    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.47;DB;DP=39;Dels=0.0;FS=1.481;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.642;QD=10.97;ReadPosRankSum=0.128;SNPEFF_AMINO_ACID_CHANGE=L441;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120803564_120803699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:23,16:39:99:458,0,809
8    120814020    rs7813438    A    G    346.69    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.734;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.006;QD=13.87;ReadPosRankSum=0.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521007    GT:AD:DP:GQ:PL    0/1:12,13:25:99:377,0,429
8    120816010    rs4871629    A    G    206.74    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.226;QD=8.61;ReadPosRankSum=-1.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521007    GT:AD:DP:GQ:PL    0/1:15,9:24:99:237,0,534
8    120818709    rs71571631    CTT    C    162.53    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=32;FS=5.643;HRun=19;HaplotypeScore=258.5163;IndelType=D;MQ=45.67;MQ0=1;MQRankSum=-0.794;QD=4.93;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:23,9:32:88.51:202,0,89
8    120818762    rs35019302    G    T    66.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.13;MQ0=1;MQRankSum=0.361;QD=6.67;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:5,5:10:96.67:97,0,99
8    120831856    rs7003687    T    A    369.16    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=23.07;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:5,11:16:99:399,0,150
8    120843775    rs7828086    T    C    107.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.633;QD=10.74;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313655    GT:AD:DP:GQ:PL    0/1:6,4:10:99:137,0,213
8    120844782    rs17818842    G    A    544.26    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.955;DB;DP=53;Dels=0.0;FS=3.983;HRun=0;HaplotypeScore=1.4679;MQ=59.13;MQ0=0;MQRankSum=0.064;QD=10.27;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=P8L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120844722_120845103;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:32,21:53:99:574,0,992
8    120847078    rs1055133    C    G    259.75    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.04;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=0.0;QD=16.23;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:7,8:16:99:290,0,254
8    120847123    rs1055131    C    T    452.04    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=0.649;DB;DP=41;Dels=0.0;FS=5.301;HRun=0;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;MQRankSum=0.124;QD=11.03;ReadPosRankSum=-0.235;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378164    GT:AD:DP:GQ:PL    0/1:25,16:41:99:482,0,751
8    120847188    rs1055130    T    C    448.79    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.9;DB;DP=51;Dels=0.0;FS=2.507;HRun=0;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;MQRankSum=-0.244;QD=8.8;ReadPosRankSum=-0.263;SNPEFF_AMINO_ACID_CHANGE=H376R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120846216_120847241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313655    GT:AD:DP:GQ:PL    0/1:32,19:51:99:479,0,1034
8    120862767    rs112349158    T    TA    766.93    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.143;DB;DP=44;FS=1.424;HRun=1;HaplotypeScore=97.1897;IndelType=I;MQ=60.49;MQ0=0;MQRankSum=1.203;QD=17.43;ReadPosRankSum=-1.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521795    GT:AD:DP:GQ:PL    0/1:23,21:44:99:806,0,728
8    120940652    rs16893299    C    T    1336.64    PASS    AB=0.347;AC=1;AF=0.50;AN=2;BaseQRankSum=2.252;DB;DP=75;Dels=0.0;FS=2.079;HRun=0;HaplotypeScore=1.8939;MQ=59.38;MQ0=0;MQRankSum=-1.457;QD=17.82;ReadPosRankSum=-0.351;SNPEFF_AMINO_ACID_CHANGE=H45;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_120940640_120940818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286234    GT:AD:DP:GQ:PL    0/1:26,49:75:99:1367,0,751
8    120940867    rs28461628    G    A    486.13    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=28;Dels=0.0;FS=2.182;HRun=1;HaplotypeScore=0.9332;MQ=58.33;MQ0=0;MQRankSum=-0.952;QD=17.36;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286234    GT:AD:DP:GQ:PL    0/1:12,15:28:99:516,0,429
8    120940874    rs62528677    T    C    331.22    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.529;DB;DP=25;Dels=0.0;FS=10.193;HRun=1;HaplotypeScore=2.5877;MQ=57.36;MQ0=0;MQRankSum=-0.408;QD=13.25;ReadPosRankSum=-1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286234    GT:AD:DP:GQ:PL    0/1:13,12:25:99:361,0,450
8    121013770    rs2271900    A    G    371.01    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=1.503;DB;DP=53;Dels=0.0;FS=1.234;HRun=0;HaplotypeScore=3.0995;MQ=57.79;MQ0=0;MQRankSum=0.309;QD=7.0;ReadPosRankSum=-0.011;SNPEFF_AMINO_ACID_CHANGE=N103S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_121013764_121013949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPTOR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523492    GT:AD:DP:GQ:PL    0/1:33,19:53:99:401,0,945
8    121061879    rs4871827    G    A    952.24    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.42;MQ0=0;MQRankSum=1.204;QD=12.05;ReadPosRankSum=0.811;SNPEFF_AMINO_ACID_CHANGE=S288N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_121061815_121062283;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPTOR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523492    GT:AD:DP:GQ:PL    0/1:46,33:79:99:982,0,1417
8    121062077    rs1051534    A    G    188.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=23.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518057    GT:AD:DP:GQ:PL    0/1:2,6:8:57.16:218,0,57
8    121174837    rs11987656    C    G    314.83    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.812;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.23;QD=10.86;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    0/1:17,12:29:99:345,0,511
8    121180667    rs2198751    C    T    72.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,4:4:9:105,9,0
8    121210069    rs2305598    T    C    1221.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.393;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.091;QD=29.8;ReadPosRankSum=-1.967;SNPEFF_AMINO_ACID_CHANGE=G17;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_121210050_121210169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434620    GT:AD:DP:GQ:PL    1/1:2,39:41:60.54:1255,61,0
8    121210250    rs2305599    C    T    305.74    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=30.57;ReadPosRankSum=-1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    0/1:1,9:10:8.48:335,0,8
8    121211847    rs2326483    C    T    778.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.476;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.835;QD=27.79;ReadPosRankSum=-0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:1,27:28:26.19:811,26,0
8    121215991    rs2305600    T    C    1109.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=30.81;SNPEFF_AMINO_ACID_CHANGE=S120;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_121215948_121216109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434620    GT:AD:DP:GQ:PL    1/1:0,36:36:93.20:1142,93,0
8    121220395    rs3765062    G    A    1036.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.28;MQ0=0;QD=39.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1069,78,0
8    121221871    rs10505377    C    G    256.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
8    121228679    rs4870723    A    C    1894.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_AMINO_ACID_CHANGE=N376H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_121228590_121228729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434620    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1927,147,0
8    121259843    rs2305604    T    C    1814.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1847,147,0
8    121267617    rs993823    C    T    2438.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2472,181,0
8    121290106    rs28529014    T    C    167.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432943    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
8    121290573    rs2305609    T    A    649.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432943    GT:AD:DP:GQ:PL    1/1:0,24:24:54.17:682,54,0
8    121292407    rs1869831    G    A    1273.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432943    GT:AD:DP:GQ:PL    1/1:0,34:34:96.30:1306,96,0
8    121293142    rs57400853    CTT    C    547.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=15;HaplotypeScore=143.9029;IndelType=D;MQ=59.55;MQ0=0;QD=18.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432943    GT:AD:DP:GQ:PL    1/1:4,22:30:71.08:590,71,0
8    121293331    rs1563388    G    A    832.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432943    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:866,63,0
8    121295744    rs17237080    T    C    56.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9939;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=3.51;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    0/1:10,6:16:86.15:86,0,378
8    121296165    rs7839121    G    A    173.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
8    121309862    rs2219241    A    T    1373.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=27.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1407,117,0
8    121322016    rs118172701    A    G    80.38    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.1;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:110,0,30
8    121326122    rs34370350    CAG    C    2950.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.0;HRun=0;HaplotypeScore=257.9798;IndelType=D;MQ=60.46;MQ0=0;QD=39.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:2,72:74:99:2993,217,0
8    121326427    rs10505379    G    T    143.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
8    121327673    rs7844334    C    T    195.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,10:12:18.05:228,18,0
8    121353416    rs1563390    G    A    292    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
8    121353651    rs1563391    A    G    906.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:939,69,0
8    121353692    rs1563392    A    T    282.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.88;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.91;QD=17.63;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    0/1:4,12:16:99:312,0,122
8    121354505    rs63246862    G    A    72.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,5:5:11.99:105,12,0
8    121354506    rs62528265    G    A    72.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,5:5:11.99:105,12,0
8    121381337    rs4590476    G    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    121383048    rs4463470    T    C    2074.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=59.68;MQ0=0;QD=28.82;SNPEFF_AMINO_ACID_CHANGE=F142S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_121382976_121383320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440844    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2108,168,0
8    121383082    rs6469922    A    T    1154.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COL14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247781    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1187,108,0
8    121455558    rs5894521    GA    G    132.85    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=40;FS=6.495;HRun=14;HaplotypeScore=246.3949;IndelType=D;MQ=55.98;MQ0=0;MQRankSum=0.022;QD=3.32;ReadPosRankSum=0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MRPL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306185    GT:AD:DP:GQ:PL    0/1:21,11:40:99:172,0,193
8    121471361    rs6984090    A    G    599.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:633,48,0
8    121473656    rs11781130    A    G    33.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:64,0,34
8    121483196    rs13248998    G    A    1057.14    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=1.695;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.572;QD=21.14;ReadPosRankSum=-0.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523373    GT:AD:DP:GQ:PL    0/1:16,34:50:99:1087,0,410
8    121509825    rs35918868    C    CTTT    690.94    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.78;DB;DP=26;FS=9.997;HRun=2;HaplotypeScore=78.3021;IndelType=I;MQ=57.18;MQ0=0;MQRankSum=-1.003;QD=26.57;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:14,10:26:99:730,0,657
8    121518868    .    CT    C    30.71    QDFilter2    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DP=16;FS=0.0;HRun=14;HaplotypeScore=123.9195;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=0.466;QD=1.92;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:10,5:16:69.74:70,0,132
8    121530061    rs13258768    C    T    606.50    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=2.155;DB;DP=33;Dels=0.0;FS=1.465;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.276;QD=18.38;ReadPosRankSum=1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:13,20:33:99:636,0,417
8    121530190    rs13258848    A    G    687.21    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=47;Dels=0.0;FS=4.301;HRun=0;HaplotypeScore=1.7338;MQ=59.51;MQ0=0;MQRankSum=-1.011;QD=14.62;ReadPosRankSum=0.479;SNPEFF_AMINO_ACID_CHANGE=E782;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_121530091_121530340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:24,23:47:99:717,0,679
8    121530384    rs149238995    CTT    C    500.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.775;DB;DP=30;FS=0.0;HRun=5;HaplotypeScore=108.584;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.249;QD=16.69;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:15,15:30:99:540,0,663
8    121530460    rs12155618    T    C    65.43    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=13.09;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:1,4:5:28.61:95,0,29
8    121531154    rs13269481    G    A    73.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.44;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,144
8    121534786    rs4285526    A    G    115.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.27;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:2,4:6:64.40:146,0,64
8    121535050    rs12681110    C    T    213.64    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=19.42;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MTBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305949    GT:AD:DP:GQ:PL    0/1:4,7:11:99:244,0,133
8    123964431    rs3204141    G    A    1170.33    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=5.357;DB;DP=75;Dels=0.0;FS=10.809;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.037;QD=15.6;ReadPosRankSum=1.478;SNPEFF_AMINO_ACID_CHANGE=S227;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_123963532_123966268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZHX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314393    GT:AD:DP:GQ:PL    0/1:37,38:75:99:1200,0,994
8    123964953    rs3808600    C    T    362.73    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.091;DB;DP=37;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=58.1;MQ0=0;MQRankSum=-2.824;QD=9.8;ReadPosRankSum=-0.898;SNPEFF_AMINO_ACID_CHANGE=T401;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_123963532_123966268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZHX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314393    GT:AD:DP:GQ:PL    0/1:22,15:37:99:393,0,716
8    124027628    rs7159    T    C    945.02    PASS    AB=0.34;AC=1;AF=0.50;AN=2;BaseQRankSum=0.725;DB;DP=50;Dels=0.0;FS=4.803;HRun=0;HaplotypeScore=0.0;MQ=55.71;MQ0=0;MQRankSum=-1.544;QD=18.9;ReadPosRankSum=0.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DERL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519018    GT:AD:DP:GQ:PL    0/1:17,33:50:99:975,0,456
8    124027840    rs117550079    C    T    127.96    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=1.069;DB;DP=23;Dels=0.0;FS=4.775;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.553;QD=5.56;ReadPosRankSum=-0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DERL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259512    GT:AD:DP:GQ:PL    0/1:17,6:23:99:158,0,513
8    124042733    rs2891672    T    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DERL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259512    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
8    124243468    rs77630260    G    A    252.81    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.051;QD=18.06;ReadPosRankSum=0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518996    GT:AD:DP:GQ:PL    0/1:4,10:14:99:283,0,123
8    124249955    .    G    A    133.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=13.35;ReadPosRankSum=1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522477    GT:AD:DP:GQ:PL    0/1:5,5:10:99:163,0,175
8    124440336    rs10628888    A    AAAG    2912.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=268.1987;IndelType=I;MQ=51.1;MQ0=0;QD=56.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDYHV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287387    GT:AD:DP:GQ:PL    1/1:8,42:52:99:2954,154,0
8    124448547    rs12675771    G    C    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=9.5;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDYHV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287387    GT:AD:DP:GQ:PL    0/1:2,2:4:64.55:68,0,65
8    124448689    rs9297669    T    C    1005    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDYHV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287387    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1038,81,0
8    124448947    rs6470148    A    G    170.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDYHV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287387    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
8    124526607    rs2294088    G    A    290.61    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=22.35;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443022    GT:AD:DP:GQ:PL    0/1:4,9:13:99:321,0,124
8    124553222    rs4871385    G    C    173.32    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.604;DB;DP=27;Dels=0.0;FS=1.674;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=6.42;ReadPosRankSum=-1.456;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124553139_124553446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443022    GT:AD:DP:GQ:PL    0/1:11,16:27:99:203,0,361
8    124658210    rs16898671    C    T    403.82    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.868;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.48;QD=14.96;ReadPosRankSum=1.043;SNPEFF_AMINO_ACID_CHANGE=A505;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124657767_124658268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    0/1:13,14:27:99:434,0,414
8    124658400    rs77201406    G    T    67.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=57.28;MQ0=0;MQRankSum=1.3;QD=9.64;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    0/1:4,3:7:97.47:97,0,140
8    124658404    rs11786734    A    G    104.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=57.28;MQ0=0;MQRankSum=-0.55;QD=14.88;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    0/1:3,4:7:98.52:134,0,99
8    124659329    rs11991744    C    A    542.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:575,42,0
8    124663769    rs10109736    A    T    1496.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1529,111,0
8    124664130    rs11780509    C    T    434.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.149;DB;DP=36;Dels=0.0;FS=4.938;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.589;QD=12.07;ReadPosRankSum=0.875;SNPEFF_AMINO_ACID_CHANGE=R346K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124663817_124665190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    0/1:20,16:36:99:464,0,551
8    124664167    rs11784192    T    C    1234.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=I334V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124663817_124665190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1268,105,0
8    124664594    rs61730397    C    T    657.70    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.399;DB;DP=56;Dels=0.0;FS=9.734;HRun=0;HaplotypeScore=0.9947;MQ=59.67;MQ0=0;MQRankSum=-0.989;QD=11.74;ReadPosRankSum=-1.735;SNPEFF_AMINO_ACID_CHANGE=G191;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124663817_124665190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    0/1:29,27:56:99:688,0,1022
8    124664792    rs7387544    C    T    420.60    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.811;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=14.5;ReadPosRankSum=-2.64;SNPEFF_AMINO_ACID_CHANGE=S125;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124663817_124665190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    0/1:15,14:29:99:451,0,412
8    124664873    rs7387792    A    G    528.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.15;SNPEFF_AMINO_ACID_CHANGE=H98;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124663817_124665190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    1/1:0,25:25:57.07:562,57,0
8    124664874    rs7386562    T    C    481.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.5;SNPEFF_AMINO_ACID_CHANGE=H98R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124663817_124665190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    1/1:0,26:26:54.05:514,54,0
8    124665124    rs61910739    C    T    618.15    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=2.693;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.54;MQ0=0;MQRankSum=0.302;QD=15.08;ReadPosRankSum=-0.013;SNPEFF_AMINO_ACID_CHANGE=D15N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124663817_124665190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    0/1:18,23:41:99:648,0,403
8    124665211    rs7387855    C    T    531.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325995    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:564,42,0
8    124693410    rs4471017    G    C    1923.66    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=3.514;DB;DP=146;Dels=0.0;FS=0.691;HRun=1;HaplotypeScore=0.9933;MQ=59.24;MQ0=0;MQRankSum=-0.396;QD=13.18;ReadPosRankSum=0.305;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    0/1:81,65:146:99:1954,0,2677
8    124693444    rs3739283    C    T    6176.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=190;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7206;MQ=59.29;MQ0=0;QD=32.51;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    1/1:0,189:190:99:6177,472,0
8    124693641    rs4314634    G    A    893.21    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=65;Dels=0.0;FS=1.497;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=13.74;ReadPosRankSum=-2.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    0/1:33,32:65:99:923,0,1074
8    124696867    rs2294015    C    T    1161.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_AMINO_ACID_CHANGE=V272I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124696850_124696962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419625    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1194,90,0
8    124701358    rs73703636    G    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    124707544    rs78621248    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520519    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    124708091    rs3765204    T    C    185.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.139;QD=11.58;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    0/1:6,10:16:99:215,0,207
8    124710610    rs6995232    G    A    436.02    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=3.08;DB;DP=33;Dels=0.0;FS=1.624;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.522;QD=13.21;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    0/1:16,17:33:99:466,0,416
8    124710729    rs2294013    C    T    968.98    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=2.681;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6263;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=16.71;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=R127H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124710629_124710799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    0/1:27,31:58:99:999,0,753
8    124714722    rs13258681    T    C    69.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.42;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:100,0,31
8    124749610    rs6470179    C    T    1108.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=32.59;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_124749560_124749642;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1141,84,0
8    124749651    rs68084676    TC    T    764.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=6;HaplotypeScore=188.1107;IndelType=D;MQ=59.58;MQ0=0;QD=26.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    1/1:4,25:29:75.19:806,75,0
8    124749704    rs10956146    T    G    456.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=32.63;ReadPosRankSum=-1.488;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262219    GT:AD:DP:GQ:PL    1/1:1,13:14:36.12:490,36,0
8    124824826    rs1946586    G    A    1988.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=50.67;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=C800Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124824759_124827692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM91A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334705    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2022,156,0
8    124968243    rs74403458    T    C    90.98    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.636;QD=6.5;ReadPosRankSum=-1.485;SNPEFF_AMINO_ACID_CHANGE=F2S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124968225_124968314;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    0/1:10,4:14:99:121,0,368
8    124978712    rs7004554    A    T    130    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
8    124982215    rs7008604    G    A    230    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.041;QD=11.5;ReadPosRankSum=1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    0/1:12,8:20:99:260,0,369
8    124985780    rs10102622    A    C    940.80    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.508;QD=17.11;ReadPosRankSum=-0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    0/1:21,34:55:99:971,0,644
8    124987478    rs7465584    T    C    1653.60    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=122;Dels=0.0;FS=0.683;HRun=0;HaplotypeScore=0.9665;MQ=59.62;MQ0=0;MQRankSum=-0.505;QD=13.55;ReadPosRankSum=0.242;SNPEFF_AMINO_ACID_CHANGE=S205;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_124987390_124987546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    0/1:65,57:122:99:1684,0,1968
8    125027984    rs11785267    G    A    285.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
8    125033607    rs7819813    A    G    537.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:571,48,0
8    125033678    rs7820272    G    A    1721.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=59.53;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1754,129,0
8    125034095    rs34481779    A    AT    124.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=9;HaplotypeScore=9.1806;IndelType=I;MQ=62.13;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:166,15,0
8    125035412    rs6470210    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
8    125035533    rs4521739    G    A    498.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,15:15:42.10:532,42,0
8    125035788    rs4358790    G    C    1921.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=27.06;SNPEFF_AMINO_ACID_CHANGE=A746;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125035684_125035836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,71:71:99:1954,162,0
8    125047370    rs4871451    T    C    273.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:306,24,0
8    125051966    rs4269524    A    G    201.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
8    125052018    rs4389914    T    C    552.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,21:21:45.12:585,45,0
8    125052508    rs6995745    C    A    93.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
8    125061694    rs4871459    G    A    174.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:208,18,0
8    125061895    rs4870887    G    A    959.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=K924;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125061848_125061997;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,31:31:81.21:992,81,0
8    125062144    .    C    T    65.14    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=5.92;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    0/1:7,4:11:95.13:95,0,223
8    125072426    rs4483140    T    C    2045.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=30.08;SNPEFF_AMINO_ACID_CHANGE=P960;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125072421_125072531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2078,162,0
8    125072709    rs13258808    A    G    536.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:570,45,0
8    125074441    rs6470216    T    C    233.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:267,21,0
8    125076404    rs10808531    T    C    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
8    125076442    rs6991629    A    G    185.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,10:10:21.03:218,21,0
8    125076589    rs7012186    T    G    3861.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.57;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=D1110E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125076588_125076814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,107:108:99:3862,286,0
8    125078401    rs7816075    T    C    423.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:457,33,0
8    125081858    rs7006395    G    A    127.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=1.2;QD=8.51;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    0/1:9,6:15:99:158,0,324
8    125082585    rs7836974    G    A    802.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,22:22:63.17:835,63,0
8    125088636    rs9643188    A    G    2807.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2840,214,0
8    125094298    rs7005123    G    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    125094355    rs6987082    T    C    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
8    125094365    rs6987090    T    C    165.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
8    125094847    rs10956163    C    G    227.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:261,21,0
8    125107201    rs6470219    G    A    2023.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_AMINO_ACID_CHANGE=P1539;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125107137_125107279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2057,147,0
8    125107207    rs74695869    C    T    2085.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=V1541;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125107137_125107279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2119,156,0
8    125110258    rs10956164    C    T    157.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
8    125115773    rs13251412    C    T    128.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
8    125131813    rs78565233    G    GC    820    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.364;DB;DP=60;FS=2.7;HRun=5;HaplotypeScore=134.4694;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=0.565;QD=13.67;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    0/1:34,26:60:99:859,0,767
8    125132234    rs13278430    C    T    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.27;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FER1L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399018    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
8    125463098    rs3812474    A    T    390.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.585;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8606;MQ=60.0;MQ0=0;MQRankSum=-1.401;QD=13.96;ReadPosRankSum=0.207;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521443    GT:AD:DP:GQ:PL    0/1:14,14:28:99:421,0,426
8    125463250    rs3812475    T    C    473.66    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.736;DB;DP=52;Dels=0.0;FS=5.83;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=9.11;ReadPosRankSum=1.577;SNPEFF_AMINO_ACID_CHANGE=W28R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125463048_125465262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328599    GT:AD:DP:GQ:PL    0/1:33,19:52:99:504,0,1056
8    125463544    rs11556913    T    C    682.71    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=0.11;DB;DP=37;Dels=0.0;FS=1.348;HRun=0;HaplotypeScore=0.734;MQ=59.38;MQ0=0;MQRankSum=-0.016;QD=18.45;ReadPosRankSum=0.955;SNPEFF_AMINO_ACID_CHANGE=L126;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125463048_125465262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328599    GT:AD:DP:GQ:PL    0/1:14,23:37:99:713,0,471
8    125463937    rs148858836    G    C    1355.02    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.114;DB;DP=91;Dels=0.01;FS=1.743;HRun=0;HaplotypeScore=8.9213;MQ=59.55;MQ0=0;MQRankSum=0.736;QD=14.73;ReadPosRankSum=0.617;SNPEFF_AMINO_ACID_CHANGE=G257R;SNPEFF_CODON_CHANGE=Ggt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125463048_125465262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328599    GT:AD:DP:GQ:PL    0/1:42,49:91:99:1385,0,1264
8    125498547    rs3812471    C    T    963.40    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=3.01;DB;DP=91;Dels=0.0;FS=0.82;HRun=0;HaplotypeScore=2.9145;MQ=59.03;MQ0=0;MQRankSum=0.656;QD=10.59;ReadPosRankSum=1.483;SNPEFF_AMINO_ACID_CHANGE=Y219;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125498072_125500155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF139;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303545    GT:AD:DP:GQ:PL    0/1:53,38:91:99:993,0,1549
8    125535426    rs13263130    T    C    65.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.28;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TATDN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276692    GT:AD:DP:GQ:PL    0/1:6,3:9:95.48:95,0,227
8    125551364    rs34681068    A    G    310.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=28;Dels=0.0;FS=3.442;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=11.09;ReadPosRankSum=-0.58;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517367    GT:AD:DP:GQ:PL    0/1:16,12:28:99:341,0,544
8    125551567    rs7010411    C    T    234.23    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.064;DB;DP=21;Dels=0.0;FS=2.199;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.109;QD=11.15;ReadPosRankSum=1.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276689    GT:AD:DP:GQ:PL    0/1:13,8:21:99:264,0,328
8    125565328    rs3829037    T    C    1305.20    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=5.081;DB;DP=107;Dels=0.0;FS=3.872;HRun=0;HaplotypeScore=2.8891;MQ=59.35;MQ0=0;MQRankSum=0.519;QD=12.2;ReadPosRankSum=-0.847;SNPEFF_AMINO_ACID_CHANGE=T443A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_125563031_125565933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354184    GT:AD:DP:GQ:PL    0/1:60,47:107:99:1335,0,1714
8    125565978    rs13269215    C    T    191.11    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=14.7;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520094    GT:AD:DP:GQ:PL    0/1:5,8:13:99:221,0,139
8    125568182    rs3841189    AGG    A    146.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=10;FS=3.332;HRun=9;HaplotypeScore=31.6327;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=-0.572;QD=14.67;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522118    GT:AD:DP:GQ:PL    0/1:4,6:10:74.45:186,0,74
8    125570144    rs4870903    G    A    203.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325064    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:237,21,0
8    125574913    rs7015228    G    C    106.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.568;QD=10.67;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519226    GT:AD:DP:GQ:PL    0/1:6,4:10:99:137,0,217
8    125574925    rs7015374    G    C    132.44    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=11.04;ReadPosRankSum=-0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519226    GT:AD:DP:GQ:PL    0/1:7,5:12:99:162,0,252
8    125577869    rs2303952    C    G    783.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325064    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:817,63,0
8    125578134    rs4871501    A    T    48.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325064    GT:AD:DP:GQ:PL    1/1:0,4:4:9:81,9,0
8    125580928    rs2288664    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522532    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    125589956    rs7002655    A    G    1098.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=39.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325064    GT:AD:DP:GQ:PL    1/1:0,28:28:84.25:1132,84,0
8    125740204    rs78566090    G    A    329.52    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.907;DB;DP=21;Dels=0.0;FS=5.815;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.195;QD=15.69;ReadPosRankSum=-0.973;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472084    GT:AD:DP:GQ:PL    0/1:6,15:21:99:360,0,199
8    126044264    rs3750237    A    C    77.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.94;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,107
8    126049443    rs2272682    T    C    277.87    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=25;Dels=0.0;FS=5.528;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.481;QD=11.11;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:16,9:25:99:308,0,484
8    126056215    rs11370883    G    GC    1398.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=68.0995;IndelType=I;MQ=60.0;MQ0=0;QD=46.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530856    GT:AD:DP:GQ:PL    1/1:0,30:30:90.31:1440,90,0
8    126067985    rs2303529    A    T    399.97    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=16.0;ReadPosRankSum=-0.789;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:12,13:25:99:430,0,420
8    126068011    rs2303528    G    A    174.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-1.378;QD=14.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:6,6:12:99:205,0,207
8    126069142    rs2303521    T    C    505.90    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.5;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.25;MQ0=0;MQRankSum=1.021;QD=16.32;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:13,18:31:99:536,0,449
8    126071380    rs3765214    A    G    136.28    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.03;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:3,5:8:99:166,0,104
8    126071452    rs3765213    T    C    616.34    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=2.837;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.305;QD=20.54;ReadPosRankSum=-0.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:8,22:30:99:646,0,229
8    126079772    rs55873854    A    T    131.90    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=22;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.102;QD=6.0;ReadPosRankSum=0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:13,9:22:99:162,0,389
8    126085282    rs6651232    A    C    235.67    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=21.42;ReadPosRankSum=-0.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523297    GT:AD:DP:GQ:PL    0/1:2,9:11:56.43:266,0,56
8    126085333    rs138100660    G    C    401.86    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.668;DB;DP=22;Dels=0.0;FS=6.193;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.2;QD=18.27;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523297    GT:AD:DP:GQ:PL    0/1:9,13:22:99:432,0,286
8    126085363    rs10102230    T    C    624.97    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=3.056;DB;DP=30;Dels=0.0;FS=8.9;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=2.023;QD=20.83;ReadPosRankSum=-0.904;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523297    GT:AD:DP:GQ:PL    0/1:11,19:30:99:655,0,339
8    126087437    rs2009959    A    G    201.82    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=3.487;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=10.09;ReadPosRankSum=-0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:13,7:20:99:232,0,411
8    126088512    rs4458896    G    C    457.43    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.656;QD=19.06;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:9,15:24:99:487,0,248
8    126090946    rs113044361    TGTCTTAATAG    T    715.31    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=3.873;DB;DP=22;FS=9.394;HRun=0;HaplotypeScore=194.6738;IndelType=D;MQ=53.58;MQ0=0;MQRankSum=-2.204;QD=32.51;ReadPosRankSum=0.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519340    GT:AD:DP:GQ:PL    0/1:14,8:22:99:754,0,1937
8    126091094    rs7812319    T    C    507.90    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.016;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.79;MQ0=0;MQRankSum=-0.302;QD=9.58;ReadPosRankSum=-0.809;SNPEFF_AMINO_ACID_CHANGE=P199;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_126090980_126091172;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:33,20:53:99:538,0,1086
8    126091271    rs74415175    T    C    171.96    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.968;QD=11.46;ReadPosRankSum=0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519340    GT:AD:DP:GQ:PL    0/1:8,7:15:99:202,0,283
8    126093789    rs7831848    T    C    212.53    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.493;QD=16.35;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519340    GT:AD:DP:GQ:PL    0/1:6,7:13:99:243,0,207
8    126093882    rs7817303    G    A    510.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.114;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.362;MQ=59.45;MQ0=0;MQRankSum=0.775;QD=12.14;ReadPosRankSum=-1.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519340    GT:AD:DP:GQ:PL    0/1:24,18:42:99:540,0,727
8    126094499    rs2891636    A    G    47.37    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=4.74;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519340    GT:AD:DP:GQ:PL    0/1:7,3:10:77.36:77,0,264
8    126094614    rs2384917    T    C    722.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.346;DB;DP=54;Dels=0.0;FS=2.794;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-1.021;QD=13.38;ReadPosRankSum=-1.886;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519340    GT:AD:DP:GQ:PL    0/1:27,27:54:99:752,0,892
8    126094728    rs2384916    T    C    849.39    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.696;DB;DP=57;Dels=0.0;FS=6.621;HRun=0;HaplotypeScore=0.6651;MQ=59.6;MQ0=0;MQRankSum=1.746;QD=14.9;ReadPosRankSum=-1.795;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523397    GT:AD:DP:GQ:PL    0/1:22,35:57:99:879,0,729
8    126095121    rs11989471    A    G    47.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    126095503    rs16900368    G    A    590.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.949;DB;DP=30;Dels=0.0;FS=1.531;HRun=1;HaplotypeScore=0.9916;MQ=59.23;MQ0=0;MQRankSum=-0.168;QD=19.7;ReadPosRankSum=0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:10,20:30:99:621,0,267
8    126095868    rs12682006    C    A    102.60    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.4;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIAA0196;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318410    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,185
8    126369898    rs2293890    G    C    548.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=57.05;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMCE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287437    GT:AD:DP:GQ:PL    1/1:0,15:16:42.14:581,42,0
8    126445505    rs13277396    G    C    1140.92    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=86;Dels=0.0;FS=6.275;HRun=0;HaplotypeScore=1.3302;MQ=59.73;MQ0=0;MQRankSum=-0.11;QD=13.27;ReadPosRankSum=-0.772;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311922    GT:AD:DP:GQ:PL    0/1:46,40:86:99:1171,0,1498
8    126448089    rs2980877    G    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521778    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    128099166    rs7007694    C    T    463.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=21;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=57.0;MQ0=0;MQRankSum=0.56;QD=22.07;ReadPosRankSum=1.156;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-255B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519282    GT:AD:DP:GQ:PL    0/1:7,14:21:99:494,0,199
8    128428061    rs4871789    A    G    368.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_8_128427857_128429439;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU5F1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391675    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:401,30,0
8    128428795    rs6998254    G    A    2753.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.04;MQ0=0;QD=33.59;SNPEFF_AMINO_ACID_CHANGE=Q228;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_128427857_128429439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU5F1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391675    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2787,217,0
8    128428823    rs7002225    G    C    2730.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.8;MQ0=0;QD=31.02;SNPEFF_AMINO_ACID_CHANGE=E238Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_128427857_128429439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU5F1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391675    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2763,208,0
8    128429262    rs9297754    G    C    553.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.85;MQ0=0;QD=30.76;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU5F1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391675    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:587,48,0
8    128429315    rs9297755    T    A    221.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=33.55;MQ0=0;QD=27.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU5F1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391675    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:255,24,0
8    128807164    rs11778609    T    G    161.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504719    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
8    129021179    rs2114358    G    A    1939.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=32.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410569    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1973,144,0
8    129021262    rs2392823    C    T    818.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410569    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:852,63,0
8    130868061    rs2306528    G    T    294.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM49B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311292    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:327,24,0
8    130874674    rs298611    A    C    934.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.11;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM49B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311292    GT:AD:DP:GQ:PL    1/1:0,26:26:75.22:968,75,0
8    130874791    rs167239    T    A    165.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM49B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311292    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
8    131067080    .    TGGAG    T    1291.13    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=3.435;DP=30;FS=2.576;HRun=0;HaplotypeScore=153.1087;IndelType=D;MQ=51.36;MQ0=1;MQRankSum=-0.895;QD=41.65;ReadPosRankSum=1.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:6,25:30:99:1330,0,289
8    131092026    rs6415509    T    A    1577.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1611,120,0
8    131124559    rs966185    T    C    657.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=I728V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_131124340_131124568;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357668    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:691,51,0
8    131127831    rs2305513    T    C    2848.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2881,211,0
8    131128024    rs3217641    G    GA    609.36    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.066;DB;DP=39;FS=0.0;HRun=3;HaplotypeScore=87.6404;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=15.62;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:21,18:39:99:648,0,540
8    131129442    rs6470802    T    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    131130594    rs10956511    C    T    104.38    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=11.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:4,5:9:99:134,0,145
8    131136173    rs34680836    C    CA    46.10    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DB;DP=22;FS=0.0;HRun=13;HaplotypeScore=168.589;IndelType=I;MQ=52.47;MQ0=0;MQRankSum=0.474;QD=2.1;ReadPosRankSum=0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:15,5:22:85.13:85,0,134
8    131138344    rs2305510    A    C    269.72    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.203;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.14;MQ0=0;MQRankSum=0.027;QD=9.99;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:14,13:27:99:300,0,478
8    131165086    rs3935174    A    T    715.78    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=2.442;DB;DP=49;Dels=0.0;FS=3.055;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;MQRankSum=0.553;QD=14.61;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:27,22:49:99:746,0,826
8    131179560    rs111521624    GA    G    159.49    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.931;DB;DP=25;FS=0.0;HRun=12;HaplotypeScore=104.5224;IndelType=D;MQ=59.07;MQ0=0;MQRankSum=-0.372;QD=6.38;ReadPosRankSum=-1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:13,12:25:99:199,0,187
8    131192905    rs28495072    G    C    896.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520927    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:930,69,0
8    131193153    rs71572332    T    TA    1094.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.791;DB;DP=60;FS=3.866;HRun=12;HaplotypeScore=150.6117;IndelType=I;MQ=60.16;MQ0=0;MQRankSum=0.343;QD=18.25;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    1/1:15,45:60:18.67:1137,19,0
8    131199416    rs72722371    T    G    243.73    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=58.63;MQ0=0;MQRankSum=-1.588;QD=14.34;ReadPosRankSum=0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:8,9:17:99:274,0,233
8    131200298    rs113293903    G    GA    486.52    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.817;DB;DP=66;FS=0.0;HRun=10;HaplotypeScore=184.0709;IndelType=I;MQ=59.98;MQ0=0;MQRankSum=-0.243;QD=7.37;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:43,23:66:99:526,0,665
8    131226652    rs1469288    G    A    71.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.76;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521426    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:101,0,30
8    131227019    rs1469286    G    A    361.75    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.42;DB;DP=26;Dels=0.0;FS=3.188;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=13.91;ReadPosRankSum=1.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343135    GT:AD:DP:GQ:PL    0/1:12,14:26:99:392,0,440
8    131792607    rs11418327    C    CA    416.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=12;HaplotypeScore=139.8007;IndelType=I;MQ=53.17;MQ0=0;QD=16.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377928    GT:AD:DP:GQ:PL    1/1:7,8:25:66.49:458,66,0
8    131797568    rs12546275    G    A    405.76    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.295;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=15.61;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:12,14:26:99:436,0,336
8    131812577    rs3067432    C    CAA    312.81    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=27;FS=0.0;HRun=12;HaplotypeScore=128.0299;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=0.259;QD=11.59;ReadPosRankSum=-0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:17,8:27:99:352,0,323
8    131812899    rs263237    G    T    261.12    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.908;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.2;MQ0=0;MQRankSum=1.882;QD=9.0;ReadPosRankSum=0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:17,12:29:99:291,0,549
8    131812916    rs112136391    T    G    151.82    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.158;QD=7.59;ReadPosRankSum=-1.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:13,7:20:99:182,0,448
8    131848465    rs2259296    A    G    289.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:322,27,0
8    131848815    rs2664380    C    T    177.50    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=17.75;ReadPosRankSum=-1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:3,7:10:95.70:207,0,96
8    131897082    rs4128982    A    G    500.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.162;QD=17.87;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:12,16:28:99:530,0,412
8    131916318    rs11781997    A    G    1378.96    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=4.181;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.13;MQ0=0;MQRankSum=-0.767;QD=16.82;ReadPosRankSum=0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:35,47:82:99:1409,0,991
8    131916374    rs78743530    AG    A    434.91    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=3.179;DB;DP=29;FS=6.854;HRun=3;HaplotypeScore=105.9107;IndelType=D;MQ=60.37;MQ0=0;MQRankSum=1.474;QD=15.0;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:14,15:29:99:474,0,467
8    131921956    rs12547243    A    G    981.54    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.512;DB;DP=88;Dels=0.0;FS=0.82;HRun=3;HaplotypeScore=1.2434;MQ=58.68;MQ0=0;MQRankSum=-0.68;QD=11.15;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=P161;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_131921954_131922112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522949    GT:AD:DP:GQ:PL    0/1:49,39:88:99:1012,0,1463
8    131922027    rs12545028    T    G    662.50    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.805;DB;DP=65;Dels=0.0;FS=1.101;HRun=0;HaplotypeScore=0.6651;MQ=58.93;MQ0=0;MQRankSum=-0.707;QD=10.19;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=R138;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_131921954_131922112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522949    GT:AD:DP:GQ:PL    0/1:41,24:65:99:692,0,1335
8    131922214    rs28416041    T    C    31.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.358;QD=5.23;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:3,3:6:30.98:61,0,31
8    131922223    rs56251739    G    T    35.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-1.231;QD=5.84;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:3,3:6:32.73:65,0,33
8    132002576    rs1329803    G    A    764.76    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.945;DB;DP=65;Dels=0.0;FS=8.683;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=1.421;QD=11.77;ReadPosRankSum=-0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286355    GT:AD:DP:GQ:PL    0/1:40,25:65:99:795,0,1277
8    132952727    rs34080810    A    AT    323.89    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.04;DB;DP=42;FS=9.834;HRun=13;HaplotypeScore=204.0767;IndelType=I;MQ=57.04;MQ0=0;MQRankSum=-1.601;QD=7.71;ReadPosRankSum=-0.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    0/1:24,18:42:99:363,0,265
8    132956768    rs4645545    C    T    80.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.11;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:110,0,29
8    132956805    rs4496948    A    C    104.53    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=14.93;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    0/1:2,5:7:66.82:135,0,67
8    132958505    rs10104588    G    A    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520362    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
8    132958609    rs9297837    A    T    81.17    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.196;QD=5.41;ReadPosRankSum=-0.979;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520362    GT:AD:DP:GQ:PL    0/1:11,4:15:99:111,0,394
8    132966028    rs10755935    T    C    571.23    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=3.494;DB;DP=42;Dels=0.0;FS=10.579;HRun=0;HaplotypeScore=1.7987;MQ=54.22;MQ0=0;MQRankSum=1.242;QD=13.6;ReadPosRankSum=0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    0/1:19,23:42:99:601,0,471
8    132968404    rs16904559    A    G    65.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522709    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:97,9,0
8    132980709    rs6471017    G    A    2908.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2941,214,0
8    132980781    rs2270879    C    T    481.73    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.173;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.814;QD=17.84;ReadPosRankSum=0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    0/1:11,16:27:99:512,0,349
8    132982824    rs1051221    A    G    1306.37    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.543;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.143;QD=12.32;ReadPosRankSum=-0.768;SNPEFF_AMINO_ACID_CHANGE=N329D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_132982723_132982890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519656    GT:AD:DP:GQ:PL    0/1:55,51:106:99:1336,0,1786
8    132988478    rs59396243    T    A    120.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.949;DB;DP=21;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.107;QD=5.72;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    0/1:12,9:21:99:150,0,427
8    132996599    rs16904564    A    C    1026.25    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.731;DB;DP=71;Dels=0.0;FS=2.497;HRun=1;HaplotypeScore=0.5784;MQ=59.08;MQ0=0;MQRankSum=-0.834;QD=14.45;ReadPosRankSum=1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    0/1:35,36:71:99:1056,0,1084
8    132997353    rs10085968    T    C    1427.66    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.523;DB;DP=102;Dels=0.0;FS=4.796;HRun=0;HaplotypeScore=0.734;MQ=59.77;MQ0=0;MQRankSum=1.294;QD=14.0;ReadPosRankSum=-1.512;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    0/1:49,53:102:99:1458,0,1516
8    133008823    rs2270873    G    A    536.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254624    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:570,42,0
8    133023163    rs4736529    G    C    3766.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7883;MQ=59.75;MQ0=0;QD=33.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521940    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3767,274,0
8    133041242    rs6471026    C    G    761.69    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=49;Dels=0.0;FS=6.114;HRun=0;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=-1.75;QD=15.54;ReadPosRankSum=0.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:24,25:49:99:792,0,839
8    133043974    rs6415547    G    A    34.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=6.95;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:3,2:5:64.76:65,0,97
8    133045176    rs1995315    A    G    184.52    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.838;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0739;MQ=57.97;MQ0=0;MQRankSum=1.655;QD=8.02;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:11,12:23:99:215,0,397
8    133045480    rs2202068    C    T    744.05    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=4.194;DB;DP=41;Dels=0.0;FS=2.0;HRun=0;HaplotypeScore=2.2381;MQ=60.0;MQ0=0;MQRankSum=-1.522;QD=18.15;ReadPosRankSum=1.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:17,24:41:99:774,0,452
8    133046927    rs6471028    T    C    190    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.56;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.082;QD=9.05;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:14,7:21:99:220,0,492
8    133046977    rs7834841    A    G    750.22    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-1.222;QD=13.64;ReadPosRankSum=1.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:29,26:55:99:780,0,944
8    133047071    rs11779306    G    A    1012.46    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.917;DB;DP=77;Dels=0.0;FS=1.95;HRun=0;HaplotypeScore=1.8606;MQ=60.0;MQ0=0;MQRankSum=-0.281;QD=13.15;ReadPosRankSum=-0.419;SNPEFF_AMINO_ACID_CHANGE=H230;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133047028_133047081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:40,37:77:99:1042,0,1159
8    133048619    rs7461611    T    C    1934.31    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=168;Dels=0.0;FS=12.658;HRun=0;HaplotypeScore=6.2041;MQ=59.75;MQ0=0;MQRankSum=-1.604;QD=11.51;ReadPosRankSum=-1.266;SNPEFF_AMINO_ACID_CHANGE=K242;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133048618_133048665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443356    GT:AD:DP:GQ:PL    0/1:94,74:168:99:1964,0,2808
8    133049810    rs6992506    A    G    68.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.77;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:4,3:7:98.41:98,0,111
8    133050900    rs871959    A    G    144.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.668;QD=14.43;ReadPosRankSum=-1.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,177
8    133053309    rs7386782    T    C    1378.80    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.16;DB;DP=121;Dels=0.0;FS=4.517;HRun=1;HaplotypeScore=1.8606;MQ=59.81;MQ0=0;MQRankSum=0.201;QD=11.4;ReadPosRankSum=-1.083;SNPEFF_AMINO_ACID_CHANGE=S147G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133053291_133053403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:68,53:121:99:1409,0,2120
8    133053318    rs7386783    T    C    1335.36    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.183;DB;DP=122;Dels=0.0;FS=10.204;HRun=0;HaplotypeScore=0.7887;MQ=59.81;MQ0=0;MQRankSum=-1.128;QD=10.95;ReadPosRankSum=-0.924;SNPEFF_AMINO_ACID_CHANGE=N144D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133053291_133053403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:70,52:122:99:1365,0,2001
8    133053714    rs1466884    G    A    561.83    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.361;QD=21.61;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OC90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254627    GT:AD:DP:GQ:PL    0/1:8,18:26:99:592,0,252
8    133067315    rs4736538    G    A    1127.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;QD=37.59;SNPEFF_AMINO_ACID_CHANGE=R183C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133067228_133067320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-240B13.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262283    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1161,84,0
8    133089975    rs2280851    A    G    1185.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=28.92;SNPEFF_AMINO_ACID_CHANGE=L132S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133089973_133090218;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-240B13.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262283    GT:AD:DP:GQ:PL    1/1:0,41:41:93.28:1219,93,0
8    133101818    rs6471038    G    A    1748.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=I159;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133101763_133101846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1782,129,0
8    133102009    rs4736401    T    C    136.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:169,15,0
8    133107830    rs7833441    T    C    1972.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=V128;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133107766_133107849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2005,150,0
8    133107893    rs10956634    A    G    1576.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1609,126,0
8    133108110    rs2469607    T    C    631.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:665,51,0
8    133111307    rs2469493    C    G    530.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:564,42,0
8    133112392    rs1370568    G    A    587.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:620,45,0
8    133116109    rs2469645    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    133116310    rs2436098    G    T    507.37    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=1.399;DB;DP=29;Dels=0.0;FS=2.755;HRun=3;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.078;QD=17.5;ReadPosRankSum=-0.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    0/1:10,19:29:99:537,0,296
8    133117362    rs9642906    T    A    251.86    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.836;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.988;QD=12.59;ReadPosRankSum=-1.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414222    GT:AD:DP:GQ:PL    0/1:11,9:20:99:282,0,357
8    133142310    rs2469625    G    C    154.65    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.927;MQ=51.2;MQ0=0;MQRankSum=0.89;QD=4.99;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388996    GT:AD:DP:GQ:PL    0/1:18,13:31:99:185,0,375
8    133142353    rs2436132    G    A    65.39    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.835;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.521;QD=4.36;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388996    GT:AD:DP:GQ:PL    0/1:8,7:15:95.38:95,0,224
8    133150103    rs2469515    C    T    873    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=47;Dels=0.0;FS=11.165;HRun=0;HaplotypeScore=0.9332;MQ=59.51;MQ0=0;MQRankSum=-1.215;QD=18.57;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388996    GT:AD:DP:GQ:PL    0/1:18,29:47:99:903,0,539
8    133175875    rs73355088    G    A    161.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=13.47;ReadPosRankSum=0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388996    GT:AD:DP:GQ:PL    0/1:6,6:12:99:192,0,215
8    133187571    rs77494140    T    G    127.85    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=9.83;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388996    GT:AD:DP:GQ:PL    0/1:5,8:13:99:158,0,168
8    133187572    rs75870584    T    A    128.67    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.256;QD=9.9;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388996    GT:AD:DP:GQ:PL    0/1:5,8:13:99:159,0,167
8    133192283    rs41272385    G    A    75.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.02;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388996    GT:AD:DP:GQ:PL    0/1:2,3:5:55.37:105,0,55
8    133693155    rs16904717    A    G    1245.31    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.538;DB;DP=113;Dels=0.0;FS=3.754;HRun=0;HaplotypeScore=0.0;MQ=57.12;MQ0=0;MQRankSum=0.08;QD=11.02;ReadPosRankSum=0.605;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524079    GT:AD:DP:GQ:PL    0/1:60,53:113:99:1275,0,1763
8    133693227    rs10102608    G    C    438.24    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.03;MQ=53.2;MQ0=0;MQRankSum=-1.345;QD=8.43;ReadPosRankSum=-1.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524079    GT:AD:DP:GQ:PL    0/1:22,17:52:99:468,0,716
8    133710246    rs10956679    C    T    52.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=6.62;ReadPosRankSum=-2.017;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524079    GT:AD:DP:GQ:PL    0/1:4,4:8:82.95:83,0,147
8    133710623    rs5895153    G    GC    137.99    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=52.7556;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=0.271;QD=9.86;ReadPosRankSum=-0.533;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524079    GT:AD:DP:GQ:PL    0/1:9,5:14:99:177,0,259
8    133723166    rs1895807    A    G    453.04    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.849;DB;DP=43;Dels=0.0;FS=1.322;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.526;QD=10.54;ReadPosRankSum=-1.186;SNPEFF_AMINO_ACID_CHANGE=W293R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133722194_133723228;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523829    GT:AD:DP:GQ:PL    0/1:24,19:43:99:483,0,841
8    133734455    rs34385955    C    CAA    175.52    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=25;FS=0.0;HRun=14;HaplotypeScore=193.7288;IndelType=I;MQ=54.2;MQ0=0;MQRankSum=-1.376;QD=7.02;ReadPosRankSum=-1.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356838    GT:AD:DP:GQ:PL    0/1:16,5:25:99:215,0,112
8    133759051    rs2739024    G    A    64.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=9.27;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517538    GT:AD:DP:GQ:PL    0/1:4,3:7:94.87:95,0,143
8    133764263    rs2467986    G    A    146.53    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.172;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.439;QD=8.62;ReadPosRankSum=-0.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356838    GT:AD:DP:GQ:PL    0/1:10,7:17:99:177,0,370
8    133769554    rs138117721    TGA    T    185.01    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DB;DP=23;FS=2.831;HRun=0;HaplotypeScore=78.864;IndelType=D;MQ=59.56;MQ0=0;MQRankSum=0.475;QD=8.04;ReadPosRankSum=0.475;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522594    GT:AD:DP:GQ:PL    0/1:16,7:23:99:224,0,624
8    133769625    rs11778229    T    C    112.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.46;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522594    GT:AD:DP:GQ:PL    0/1:4,5:9:99:142,0,142
8    133771317    rs2433052    C    T    33.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.35;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356838    GT:AD:DP:GQ:PL    0/1:2,2:4:63.41:63,0,72
8    133811435    rs2244885    T    A    246    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=14;Dels=0.0;FS=7.549;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.557;QD=17.57;ReadPosRankSum=0.934;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF20L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522580    GT:AD:DP:GQ:PL    0/1:3,11:14:84.43:276,0,84
8    133829959    rs235435    T    G    31.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.0;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF20L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395374    GT:AD:DP:GQ:PL    0/1:4,4:8:61.95:62,0,144
8    133836098    rs235440    G    T    108.16    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=12.02;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF20L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361997    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,135
8    133836432    rs235441    C    T    278.79    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.98;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=58.53;MQ0=0;MQRankSum=0.612;QD=14.67;ReadPosRankSum=0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF20L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522253    GT:AD:DP:GQ:PL    0/1:9,10:19:99:309,0,294
8    133844508    rs16904746    C    T    1207.59    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=72;Dels=0.0;FS=2.006;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.228;QD=16.77;ReadPosRankSum=-0.974;SNPEFF_AMINO_ACID_CHANGE=L566;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133844480_133844644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF20L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395390    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1238,0,977
8    133848685    rs2293997    G    A    100.86    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.971;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.394;QD=5.6;ReadPosRankSum=0.986;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF20L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220847    GT:AD:DP:GQ:PL    0/1:13,5:18:99:131,0,474
8    133858009    rs756201    C    T    415.45    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.996;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=11.54;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF20L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220847    GT:AD:DP:GQ:PL    0/1:19,17:36:99:445,0,587
8    133880212    rs180202    G    A    34.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.53;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:2,2:4:64.10:64,0,69
8    133880334    rs180203    T    C    916.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:950,72,0
8    133885554    rs180210    T    C    124.54    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=15.57;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:3,5:8:60.01:155,0,60
8    133894502    rs180217    C    T    162.83    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=18.09;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523901    GT:AD:DP:GQ:PL    0/1:2,7:9:60.81:193,0,61
8    133899160    rs180222    C    G    358.88    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=53;Dels=0.0;FS=3.069;HRun=0;HaplotypeScore=7.4575;MQ=57.79;MQ0=0;MQRankSum=-0.271;QD=6.77;ReadPosRankSum=-0.965;SNPEFF_AMINO_ACID_CHANGE=Q515E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133898693_133899793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:29,22:53:99:389,0,694
8    133900252    rs180223    T    G    361.19    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.498;QD=11.65;ReadPosRankSum=-2.198;SNPEFF_AMINO_ACID_CHANGE=S734A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133900229_133900813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:15,16:31:99:391,0,519
8    133900386    rs2069550    T    C    245.37    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.344;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.448;QD=9.44;ReadPosRankSum=0.184;SNPEFF_AMINO_ACID_CHANGE=P778;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133900229_133900813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:16,10:26:99:275,0,534
8    133909974    rs853326    A    G    1139.16    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.375;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.643;QD=16.27;ReadPosRankSum=2.072;SNPEFF_AMINO_ACID_CHANGE=M1028V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133909894_133910031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1169,0,1009
8    133910962    rs853324    T    G    236.86    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=13.93;ReadPosRankSum=-1.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:8,9:17:99:267,0,283
8    133913525    rs853322    A    G    291.97    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.691;DB;DP=31;Dels=0.0;FS=2.341;HRun=2;HaplotypeScore=1.5572;MQ=58.5;MQ0=0;MQRankSum=0.369;QD=9.42;ReadPosRankSum=-1.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518097    GT:AD:DP:GQ:PL    0/1:17,14:31:99:322,0,456
8    133920321    rs866468    A    G    34.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.89;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:5,2:7:64.22:64,0,181
8    133920411    rs2261147    T    C    307.85    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=21;Dels=0.0;FS=1.971;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.317;QD=14.66;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:10,11:21:99:338,0,353
8    133920518    rs75865560    A    G    315.06    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.883;QD=9.27;ReadPosRankSum=0.703;SNPEFF_AMINO_ACID_CHANGE=D118G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133920431_133920585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543313    GT:AD:DP:GQ:PL    0/1:22,12:34:99:345,0,694
8    133920624    rs853318    C    G    203.68    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.538;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=-0.198;QD=8.15;ReadPosRankSum=0.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:16,9:25:99:234,0,586
8    133920671    .    A    T    43.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-2.383;QD=4.32;ReadPosRankSum=-2.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:6,4:10:73.22:73,0,225
8    133925209    rs2687824    T    G    79.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=7.91;ReadPosRankSum=-2.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:5,5:10:99:109,0,184
8    133931748    rs853304    T    C    602.05    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.233;DB;DP=60;Dels=0.0;FS=3.713;HRun=1;HaplotypeScore=0.734;MQ=59.3;MQ0=0;MQRankSum=0.285;QD=10.03;ReadPosRankSum=1.119;SNPEFF_AMINO_ACID_CHANGE=A1502;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133931621_133931770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:35,25:60:99:632,0,1041
8    133935443    rs853301    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    133945679    .    T    TTGTG    576.40    PASS    AC=2;AF=1.00;AN=2;DP=13;FS=0.0;HRun=0;HaplotypeScore=105.5875;IndelType=I;MQ=41.65;MQ0=0;QD=44.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    1/1:4,5:13:36.12:618,36,0
8    133960991    rs2246624    C    T    858.40    PASS    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=1.608;DB;DP=91;Dels=0.0;FS=0.848;HRun=1;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=9.43;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:58,33:91:99:888,0,1747
8    133961011    rs4736614    T    C    784.01    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DB;DP=92;Dels=0.0;FS=0.832;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.285;QD=8.52;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:59,33:92:99:814,0,1761
8    133961237    rs2246611    G    C    219.17    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=24;Dels=0.0;FS=4.693;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.966;QD=9.13;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:14,10:24:99:249,0,435
8    133975056    rs7844210    A    C    603.66    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.942;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.67;MQ0=0;MQRankSum=-0.035;QD=17.25;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:15,20:35:99:634,0,515
8    133975183    rs76745731    A    G    1887.45    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.669;DB;DP=180;Dels=0.0;FS=1.307;HRun=1;HaplotypeScore=4.9246;MQ=59.74;MQ0=0;MQRankSum=0.135;QD=10.49;ReadPosRankSum=0.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:105,75:180:99:1917,0,3318
8    133984058    rs2076740    C    T    427.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.436;DB;DP=36;Dels=0.0;FS=1.32;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.083;QD=11.86;ReadPosRankSum=-0.182;SNPEFF_AMINO_ACID_CHANGE=R153W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_133984039_133984118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519543    GT:AD:DP:GQ:PL    0/1:18,18:36:99:457,0,516
8    133984814    .    G    GT    55.50    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=1.326;DP=49;FS=0.0;HRun=6;HaplotypeScore=460.7273;IndelType=I;MQ=47.42;MQ0=0;MQRankSum=-1.713;QD=1.13;ReadPosRankSum=-1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:42,5:49:94.53:95,0,455
8    133985115    rs1403486    A    G    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,73
8    133995475    rs10105779    A    G    443.54    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=0.807;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=27.72;ReadPosRankSum=1.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:3,13:16:71.50:474,0,71
8    133995849    rs10095925    T    C    116.58    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.32;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:147,0,27
8    134025781    rs10105991    A    T    378.22    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.596;DB;DP=21;Dels=0.0;FS=5.727;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.44;QD=18.01;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:6,15:21:99:408,0,192
8    134025783    rs10105992    A    G    368.43    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=1.692;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.75;ReadPosRankSum=0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:7,15:22:99:398,0,223
8    134050678    rs3739266    A    G    473.40    PASS    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.391;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.783;QD=19.73;ReadPosRankSum=-0.484;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    0/1:5,19:24:99:503,0,136
8    134062912    rs2252807    A    G    405.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=33.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519747    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:439,36,0
8    134062983    rs2252805    C    T    704.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519747    GT:AD:DP:GQ:PL    1/1:0,25:25:57.17:737,57,0
8    134072170    rs1006197    C    T    371.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.89;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=-1.042;QD=18.57;ReadPosRankSum=-0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519558    GT:AD:DP:GQ:PL    0/1:8,12:20:99:401,0,273
8    134072363    rs4486183    G    T    1266.31    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.314;DB;DP=97;Dels=0.0;FS=0.798;HRun=0;HaplotypeScore=0.7887;MQ=58.85;MQ0=0;MQRankSum=0.331;QD=13.05;ReadPosRankSum=0.562;SNPEFF_AMINO_ACID_CHANGE=P15T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_134072345_134072445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338087    GT:AD:DP:GQ:PL    0/1:47,50:97:99:1296,0,1493
8    134107136    rs2256476    T    G    202.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338087    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
8    134107223    rs2272706    A    G    1330.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338087    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1363,102,0
8    134107618    rs10103453    G    A    185.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338087    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:219,18,0
8    134108295    rs10106820    A    G    485.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=26.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338087    GT:AD:DP:GQ:PL    1/1:0,18:18:45.10:518,45,0
8    134108546    rs56541861    T    C    3630.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.8;MQ0=0;QD=32.13;SNPEFF_AMINO_ACID_CHANGE=W1307R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_134108450_134108617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543313    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3630,295,0
8    134108718    rs2739180    G    A    780.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.98;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.829;QD=33.92;ReadPosRankSum=0.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338087    GT:AD:DP:GQ:PL    1/1:1,22:23:24.98:813,25,0
8    134143910    rs17633144    A    G    91.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
8    134144113    rs2294024    C    T    1577.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.69;SNPEFF_AMINO_ACID_CHANGE=Y1010;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_134144056_134144190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542445    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1610,120,0
8    134145512    rs2294025    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    134146049    rs17705891    A    C    121.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
8    134147241    rs73356667    T    C    109.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220616    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:142,12,0
8    134225068    rs10089461    T    C    71.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.81;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220856    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:101,0,21
8    134225396    rs80321466    T    TC    1644.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=2;HaplotypeScore=202.5042;IndelType=I;MQ=60.51;MQ0=0;QD=39.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220856    GT:AD:DP:GQ:PL    1/1:2,40:42:99:1686,117,0
8    134225434    rs13258091    T    C    1215.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220856    GT:AD:DP:GQ:PL    1/1:0,40:40:93.29:1249,93,0
8    134233024    rs72731540    G    A    363.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.897;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.077;QD=13.99;ReadPosRankSum=-0.256;SNPEFF_AMINO_ACID_CHANGE=V184I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_134232824_134233084;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250160    GT:AD:DP:GQ:PL    0/1:13,13:26:99:394,0,460
8    134237578    rs2280834    G    C    1033.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220856    GT:AD:DP:GQ:PL    1/1:0,34:34:84.23:1067,84,0
8    134261065    rs2233335    T    G    341.68    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=31;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.22;QD=11.02;ReadPosRankSum=-0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323851    GT:AD:DP:GQ:PL    0/1:18,13:31:99:372,0,530
8    134261235    rs72731560    C    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323851    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
8    134262599    rs11575973    T    C    168.32    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.347;QD=6.23;ReadPosRankSum=0.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323851    GT:AD:DP:GQ:PL    0/1:20,7:27:99:198,0,686
8    134262915    rs36076004    C    T    151.40    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=18.92;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323851    GT:AD:DP:GQ:PL    0/1:3,5:8:69.44:181,0,69
8    134266970    rs2272650    C    G    92.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517745    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
8    134271521    rs2233326    G    C    351.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.624;DB;DP=36;Dels=0.0;FS=2.915;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.892;QD=9.75;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523892    GT:AD:DP:GQ:PL    0/1:22,14:36:99:381,0,727
8    134274226    rs2233324    C    G    303.15    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=27;Dels=0.0;FS=3.442;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.026;QD=11.23;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523892    GT:AD:DP:GQ:PL    0/1:14,12:27:99:333,0,400
8    134292516    rs2272653    A    G    1215.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323851    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1248,102,0
8    134296722    rs7816664    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323851    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    134420163    rs1989289    G    A    393.55    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=3.529;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.77;MQ0=0;MQRankSum=-1.661;QD=15.14;ReadPosRankSum=1.038;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ST13P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393673    GT:AD:DP:GQ:PL    0/1:11,15:26:99:424,0,262
8    134420210    rs1989290    G    A    448.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.165;DB;DP=32;Dels=0.0;FS=6.463;HRun=0;HaplotypeScore=0.734;MQ=59.63;MQ0=0;MQRankSum=1.187;QD=14.03;ReadPosRankSum=0.057;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ST13P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393673    GT:AD:DP:GQ:PL    0/1:16,16:32:99:479,0,446
8    134420719    rs4413754    T    C    4059.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.31;MQ0=0;QD=33.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ST13P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393673    GT:AD:DP:GQ:PL    1/1:0,121:122:99:4059,316,0
8    134420815    .    GA    G    1644.72    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=7.779;DP=165;FS=5.898;HRun=3;HaplotypeScore=955.7749;IndelType=D;MQ=51.73;MQ0=0;MQRankSum=-3.469;QD=9.91;ReadPosRankSum=-2.084;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ST13P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393673    GT:AD:DP:GQ:PL    0/1:97,69:165:99:1684,0,2541
8    134420853    rs146150038    A    C    1751.20    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=3.398;DB;DP=150;Dels=0.0;FS=0.736;HRun=2;HaplotypeScore=4.2996;MQ=48.99;MQ0=2;MQRankSum=-5.407;QD=11.67;ReadPosRankSum=0.543;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ST13P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393673    GT:AD:DP:GQ:PL    0/1:67,80:150:99:1781,0,1780
8    134421567    rs113875498    A    C    31.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.198;QD=4.56;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ST13P6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393673    GT:AD:DP:GQ:PL    0/1:5,2:7:61.93:62,0,166
8    134473917    rs2736869    T    C    121.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517668    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
8    134474148    rs1048479    C    T    1993.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=37.61;SNPEFF_AMINO_ACID_CHANGE=S273;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_134474118_134474237;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319914    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2026,147,0
8    134476797    rs72718258    T    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517668    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    134488007    rs2230542    G    A    247.60    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.608;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.532;QD=12.38;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=T87;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_134487962_134488846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319914    GT:AD:DP:GQ:PL    0/1:11,9:20:99:278,0,310
8    135524797    rs3739429    G    T    2167.30    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.557;DB;DP=117;Dels=0.0;FS=3.454;HRun=1;HaplotypeScore=1.8455;MQ=59.64;MQ0=0;MQRankSum=-0.947;QD=18.52;ReadPosRankSum=1.27;SNPEFF_AMINO_ACID_CHANGE=I1032;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_135524718_135524844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523399    GT:AD:DP:GQ:PL    0/1:50,67:117:99:2197,0,1468
8    135524933    rs3739428    G    A    589.08    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.699;DB;DP=38;Dels=0.0;FS=6.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.499;QD=15.5;ReadPosRankSum=-1.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    0/1:17,21:38:99:619,0,604
8    135524938    rs3739427    T    C    595.86    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=39;Dels=0.0;FS=6.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.378;QD=15.28;ReadPosRankSum=-1.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    0/1:17,22:39:99:626,0,593
8    135545058    rs28621035    T    G    269.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=18.0;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    0/1:5,10:15:99:300,0,128
8    135577533    rs6988653    T    A    654.17    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.834;QD=14.54;ReadPosRankSum=0.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    0/1:20,25:45:99:684,0,594
8    135600716    rs894358    C    G    167.40    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=11.16;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    0/1:8,7:15:99:197,0,289
8    135612595    rs894343    A    G    233.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.182;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.701;QD=7.3;ReadPosRankSum=-0.781;SNPEFF_AMINO_ACID_CHANGE=S841;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_135612577_135612911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398946    GT:AD:DP:GQ:PL    0/1:18,14:32:99:264,0,648
8    135612745    rs894344    A    G    668.22    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.167;DB;DP=74;Dels=0.0;FS=5.08;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.288;QD=9.03;ReadPosRankSum=-0.778;SNPEFF_AMINO_ACID_CHANGE=D690;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_135612679_135612911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    0/1:50,24:74:99:698,0,1459
8    135613581    rs894345    C    T    105.38    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=17.56;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523040    GT:AD:DP:GQ:PL    0/1:1,5:6:13.61:135,0,14
8    135613597    rs894346    T    C    187.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.19;MQ0=0;MQRankSum=0.248;QD=20.85;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523040    GT:AD:DP:GQ:PL    0/1:3,6:9:84.16:218,0,84
8    135613624    rs894347    A    G    268.77    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.95;MQ0=0;MQRankSum=1.003;QD=19.2;ReadPosRankSum=0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523040    GT:AD:DP:GQ:PL    0/1:4,10:14:99:299,0,117
8    135614015    rs145169577    G    A    722.87    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=53;Dels=0.0;FS=4.077;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.17;QD=13.64;ReadPosRankSum=-0.884;SNPEFF_AMINO_ACID_CHANGE=G536;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_135613720_135614410;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    0/1:29,24:53:99:753,0,820
8    135614705    rs3739423    A    G    697.15    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.995;QD=14.23;ReadPosRankSum=-0.974;SNPEFF_AMINO_ACID_CHANGE=R357;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_135613720_135615176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523399    GT:AD:DP:GQ:PL    0/1:22,27:49:99:727,0,654
8    135614972    rs3739422    A    G    208.56    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.215;QD=13.9;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=Y268;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_135613720_135615176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523399    GT:AD:DP:GQ:PL    0/1:8,7:15:99:239,0,285
8    135620894    rs3739421    T    G    900.73    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=68;Dels=0.0;FS=12.571;HRun=1;HaplotypeScore=2.709;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=13.25;ReadPosRankSum=-1.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518191    GT:AD:DP:GQ:PL    0/1:38,30:68:99:931,0,1192
8    135649869    .    C    T    1003.54    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.774;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.693;QD=15.68;ReadPosRankSum=-0.733;SNPEFF_AMINO_ACID_CHANGE=V33M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_135649704_135649955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522257    GT:AD:DP:GQ:PL    0/1:34,30:64:99:1034,0,981
8    135669615    .    C    T    81.12    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
8    135670229    rs2467026    T    C    834.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318135    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:867,66,0
8    135812876    rs41272391    T    G    117.75    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=13.08;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR30D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362283    GT:AD:DP:GQ:PL    0/1:4,5:9:99:148,0,138
8    136560952    rs12545587    A    G    594.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355849    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:627,45,0
8    136561153    rs11166602    A    G    1212.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355849    GT:AD:DP:GQ:PL    1/1:0,37:37:93.28:1245,93,0
8    136595527    rs7002394    G    A    139.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.4;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355849    GT:AD:DP:GQ:PL    0/1:2,6:8:58.64:169,0,59
8    136657198    rs4243846    T    C    262.70    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.722;QD=14.59;ReadPosRankSum=-1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355849    GT:AD:DP:GQ:PL    0/1:8,10:18:99:293,0,276
8    136657233    rs6984897    C    T    444.27    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.36;MQ0=0;MQRankSum=0.022;QD=15.32;ReadPosRankSum=-0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355849    GT:AD:DP:GQ:PL    0/1:15,14:29:99:474,0,495
8    136657534    rs4373553    G    A    76.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355849    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:107,0,29
8    136659195    rs28621864    C    T    537.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.93;DB;DP=38;Dels=0.0;FS=2.2;HRun=2;HaplotypeScore=1.994;MQ=57.02;MQ0=0;MQRankSum=0.319;QD=14.14;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355849    GT:AD:DP:GQ:PL    0/1:19,19:38:99:567,0,641
8    136659426    rs3184618    G    A    114.93    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.742;QD=12.77;ReadPosRankSum=-0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHDRBS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518728    GT:AD:DP:GQ:PL    0/1:1,8:9:27.60:145,0,28
8    139149510    rs6577877    A    C    562.53    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.148;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.54;MQ0=0;MQRankSum=-0.311;QD=11.25;ReadPosRankSum=-0.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:27,23:50:99:593,0,818
8    139151375    rs4634694    C    T    562.86    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=39;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=1.8288;MQ=57.09;MQ0=0;MQRankSum=-1.056;QD=14.43;ReadPosRankSum=0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395295    GT:AD:DP:GQ:PL    0/1:18,21:39:99:593,0,624
8    139151421    rs4634695    C    T    233.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9962;MQ=54.92;MQ0=0;MQRankSum=-0.088;QD=12.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395295    GT:AD:DP:GQ:PL    0/1:9,9:18:99:264,0,268
8    139151428    rs35147483    C    CTG    309.46    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=92.0975;IndelType=I;MQ=54.25;MQ0=0;MQRankSum=-0.984;QD=19.34;ReadPosRankSum=0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395295    GT:AD:DP:GQ:PL    0/1:10,6:16:99:348,0,308
8    139151519    rs4434667    G    C    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395295    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
8    139153374    rs4909738    G    C    79.47    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=5.3;ReadPosRankSum=-0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395295    GT:AD:DP:GQ:PL    0/1:9,6:15:99:109,0,277
8    139158317    rs7006664    T    C    382.05    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.538;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.045;QD=11.94;ReadPosRankSum=0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:18,14:32:99:412,0,527
8    139160613    rs6577879    A    G    110.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.48;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:2,4:6:61.75:141,0,62
8    139161029    rs2272678    A    C    99.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.05;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:4,5:9:99:129,0,139
8    139164192    rs3750306    G    A    450.55    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DB;DP=39;Dels=0.0;FS=9.237;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=11.55;ReadPosRankSum=-1.447;SNPEFF_AMINO_ACID_CHANGE=P842;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139163437_139165459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:20,19:39:99:481,0,642
8    139165068    rs3763590    C    T    612.08    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.819;DB;DP=51;Dels=0.0;FS=8.144;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.291;QD=12.0;ReadPosRankSum=-0.432;SNPEFF_AMINO_ACID_CHANGE=V550;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139163437_139165459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:29,22:51:99:642,0,867
8    139165272    rs7835712    T    C    694.94    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.076;DB;DP=61;Dels=0.0;FS=1.013;HRun=2;HaplotypeScore=0.7887;MQ=59.24;MQ0=0;MQRankSum=0.036;QD=11.39;ReadPosRankSum=0.137;SNPEFF_AMINO_ACID_CHANGE=P482;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139163437_139165459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:29,32:61:99:725,0,968
8    139165273    rs13280444    G    A    705.53    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.094;DB;DP=61;Dels=0.0;FS=1.013;HRun=0;HaplotypeScore=0.7887;MQ=59.24;MQ0=0;MQRankSum=-0.108;QD=11.57;ReadPosRankSum=-0.007;SNPEFF_AMINO_ACID_CHANGE=P482L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139163437_139165459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:29,32:61:99:736,0,963
8    139165289    rs7835830    T    C    984.76    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.79;DB;DP=58;Dels=0.0;FS=3.806;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.899;QD=16.98;ReadPosRankSum=-0.883;SNPEFF_AMINO_ACID_CHANGE=I477V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139163437_139165459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:26,32:58:99:1015,0,861
8    139165463    rs11311519    CA    C    189.49    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.391;DB;DP=30;FS=1.72;HRun=10;HaplotypeScore=73.2542;IndelType=D;MQ=59.23;MQ0=0;MQRankSum=-0.766;QD=6.32;ReadPosRankSum=0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    0/1:18,12:30:99:229,0,435
8    139189502    rs6985633    T    A    544.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=38.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:577,42,0
8    139190943    rs66488273    C    CA    826.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=6;HaplotypeScore=132.3459;IndelType=I;MQ=60.74;MQ0=0;QD=28.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    1/1:6,23:29:69.22:868,69,0
8    139190957    rs4909747    T    G    698.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395297    GT:AD:DP:GQ:PL    1/1:0,23:23:54.17:732,54,0
8    139263328    rs4909765    A    T    239.52    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.749;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.593;QD=9.21;ReadPosRankSum=1.994;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160713    GT:AD:DP:GQ:PL    0/1:17,9:26:99:270,0,600
8    139269052    rs1512403    A    G    288.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.164;QD=19.26;ReadPosRankSum=1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160713    GT:AD:DP:GQ:PL    0/1:5,10:15:99:319,0,166
8    139278263    rs7818054    A    G    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160713    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
8    139323246    rs56096441    A    G    265.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160713    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:298,24,0
8    139379964    rs340707    T    C    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160713    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
8    139380024    rs143041039    A    G    63.52    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-0.573;QD=7.06;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM135B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160713    GT:AD:DP:GQ:PL    0/1:6,3:9:93.52:94,0,215
8    139603851    rs10106999    A    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    139603889    rs78417548    C    T    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    139614436    rs4394401    G    A    1028.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,31:31:78.26:1062,78,0
8    139614582    rs6993225    C    T    281.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
8    139617046    rs12546923    A    C    111.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487854    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
8    139618754    rs4471041    T    C    373.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487854    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:406,33,0
8    139620049    rs12681582    T    G    283.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487854    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
8    139620267    rs11166829    G    A    700.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:733,54,0
8    139626176    rs7000261    C    G    2203.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2237,163,0
8    139631650    rs7009396    A    G    1455.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.92;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1489,111,0
8    139635786    rs4260898    G    A    293.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:327,24,0
8    139635883    rs7836250    A    C    2966.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.43;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,81:81:99:3000,229,0
8    139635920    rs7839790    T    A    4576.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7518;MQ=59.31;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4576,352,0
8    139638307    rs3924860    T    C    149.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
8    139647262    rs10091563    A    G    553.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_AMINO_ACID_CHANGE=P1180;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139647253_139647306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435777    GT:AD:DP:GQ:PL    1/1:0,21:21:45.13:587,45,0
8    139648770    rs11783255    A    C    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=48.5;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    0/1:2,2:4:62.63:67,0,63
8    139648775    rs11783256    A    C    114.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.995;MQ=51.01;MQ0=0;MQRankSum=0.731;QD=22.82;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    0/1:1,4:5:18.39:144,0,18
8    139648892    rs11166830    G    A    1974.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7262;MQ=58.76;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2007,156,0
8    139649301    rs12678385    C    T    129.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
8    139668032    rs11166832    T    C    2467.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2501,187,0
8    139668300    rs12675091    C    T    946.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,31:31:75.21:980,75,0
8    139672602    rs4072506    T    C    482.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:516,42,0
8    139672671    rs3935045    T    C    939.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=53.95;MQ0=0;QD=26.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,36:36:78.22:973,78,0
8    139674108    rs11780703    C    T    168.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
8    139674213    rs11780732    C    T    735.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,22:23:63.17:768,63,0
8    139675763    rs13272198    T    C    128.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
8    139675869    rs11166835    G    T    1147.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1180,87,0
8    139676082    rs4410946    A    G    599.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:632,48,0
8    139696635    rs4506262    T    C    5006.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,150:150:99:5007,385,0
8    139697478    rs9644500    T    C    1829.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=30.49;SNPEFF_AMINO_ACID_CHANGE=P693;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139697451_139697555;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545577    GT:AD:DP:GQ:PL    1/1:0,59:60:99:1863,144,0
8    139712323    rs4909835    A    G    585.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:618,48,0
8    139727808    rs5895555    AT    A    384.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=4;HaplotypeScore=140.4028;IndelType=D;MQ=32.45;MQ0=0;QD=29.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:6,7:13:39.10:426,39,0
8    139734462    rs12678237    T    C    1760.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.22;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1793,135,0
8    139737521    rs12545759    G    A    398.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.3;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    0/1:15,15:30:99:429,0,528
8    139749638    rs4409435    T    C    183.01    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=15.25;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    0/1:5,7:12:99:213,0,167
8    139767349    rs2318338    T    C    2194.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2228,169,0
8    139768085    rs7825723    G    A    808.55    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.165;DB;DP=49;Dels=0.0;FS=2.693;HRun=1;HaplotypeScore=0.9832;MQ=59.05;MQ0=0;MQRankSum=-0.124;QD=16.5;ReadPosRankSum=1.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    0/1:23,26:49:99:839,0,632
8    139774409    rs6577946    C    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
8    139774512    rs6577947    C    A    59.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.46;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    0/1:4,3:8:89.64:90,0,140
8    139823922    rs2318332    C    G    1359.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=59.44;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1392,102,0
8    139824057    rs10101430    G    A    1508.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=C478;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139824042_139824164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1542,117,0
8    139825393    rs6577951    A    G    169.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
8    139838912    rs2292927    T    C    1398.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.07;MQ0=0;QD=30.4;SNPEFF_AMINO_ACID_CHANGE=S320G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_139838901_139839024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1431,114,0
8    139845520    rs6993839    G    A    71.21    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.9;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303045    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,185
8    139889972    rs4736255    A    G    535.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL22A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484387    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:569,48,0
8    140630990    rs2615374    A    G    1449.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.601;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7273;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=28.98;ReadPosRankSum=-0.672;SNPEFF_AMINO_ACID_CHANGE=G212;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_140630501_140631342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303015    GT:AD:DP:GQ:PL    1/1:1,49:50:79.13:1482,79,0
8    141034189    rs9792174    A    T    504.06    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=48;Dels=0.04;FS=1.288;HRun=2;HaplotypeScore=3.5715;MQ=60.0;MQ0=0;MQRankSum=-1.032;QD=10.08;ReadPosRankSum=0.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389327    GT:AD:DP:GQ:PL    0/1:25,23:48:99:534,0,696
8    141297613    rs6999767    T    C    895.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389327    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:929,69,0
8    141310486    rs12156047    A    G    286.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389327    GT:AD:DP:GQ:PL    1/1:0,14:14:33.02:319,33,0
8    141436826    rs6998221    C    T    383    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.508;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.277;QD=16.65;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389327    GT:AD:DP:GQ:PL    0/1:11,12:23:99:413,0,380
8    141448916    rs13281374    G    A    36.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389327    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
8    141448961    rs13264229    T    G    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389327    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
8    141461062    rs3735803    G    A    1500.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=N137;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_141460889_141461482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389327    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1534,114,0
8    141461185    rs63648764    A    G    834.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=F194;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_141460889_141461482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389328    GT:AD:DP:GQ:PL    1/1:0,27:27:72.15:868,72,0
8    141461266    rs3735801    A    G    811.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=G167;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_141460889_141461482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389328    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:845,66,0
8    141525465    rs2231527    T    C    324.11    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.023;QD=14.09;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518971    GT:AD:DP:GQ:PL    0/1:10,13:23:99:354,0,308
8    141549291    rs2977469    A    G    387.50    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.17;QD=22.79;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    0/1:4,13:17:99:417,0,116
8    141549346    rs35387146    CT    C    481.55    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=4.675;DB;DP=35;FS=5.368;HRun=2;HaplotypeScore=117.682;IndelType=D;MQ=60.31;MQ0=0;MQRankSum=0.397;QD=13.76;ReadPosRankSum=0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    0/1:18,17:35:99:521,0,708
8    141557497    rs2292782    T    C    364.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:397,30,0
8    141559125    rs3824191    A    G    119.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
8    141559358    rs2292781    G    A    831.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=A481;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_141559213_141559397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:865,66,0
8    141561211    rs2944764    A    G    108.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521325    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:141,12,0
8    141561393    rs2292779    G    C    1279.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9627;MQ=52.29;MQ0=0;MQRankSum=1.588;QD=25.09;ReadPosRankSum=-1.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521325    GT:AD:DP:GQ:PL    1/1:2,49:51:99:1313,111,0
8    141565892    rs4961270    A    C    257.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:291,21,0
8    141566311    rs2271738    C    T    1117.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.2;SNPEFF_AMINO_ACID_CHANGE=A367;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_141566266_141566385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,37:37:87.26:1150,87,0
8    141566487    rs2271736    G    A    254.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
8    141566579    rs2977486    T    C    125.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
8    141568622    rs2292778    G    A    1265.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8154;MQ=59.48;MQ0=0;QD=28.76;SNPEFF_AMINO_ACID_CHANGE=R280;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_141568584_141568671;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1298,102,0
8    141568699    rs2292777    A    G    859.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:893,69,0
8    141568725    rs2292776    G    A    655.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=36.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:688,54,0
8    141572467    rs73362319    T    C    56.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.74;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    0/1:8,4:12:86.93:87,0,286
8    141572497    rs2292774    G    A    183.27    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=-0.634;QD=10.78;ReadPosRankSum=1.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    0/1:7,10:17:99:213,0,221
8    141572498    rs73713189    G    A    186.97    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.489;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=-0.927;QD=11.0;ReadPosRankSum=1.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    0/1:7,10:17:99:217,0,208
8    141572878    rs4961220    T    C    124.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=10.36;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220592    GT:AD:DP:GQ:PL    0/1:6,6:12:99:154,0,210
8    141669818    rs11343891    AT    A    376.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=11;HaplotypeScore=47.7375;IndelType=D;MQ=62.13;MQ0=0;QD=18.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340930    GT:AD:DP:GQ:PL    1/1:3,17:20:50.93:418,51,0
8    141684170    rs3639    T    C    423    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.853;DB;DP=31;Dels=0.0;FS=2.319;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.06;QD=13.65;ReadPosRankSum=-1.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340930    GT:AD:DP:GQ:PL    0/1:17,14:31:99:453,0,575
8    141685506    rs13249806    T    C    126.06    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.676;DB;DP=18;Dels=0.0;FS=2.823;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.76;QD=7.0;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340930    GT:AD:DP:GQ:PL    0/1:13,5:18:99:156,0,372
8    141685641    rs6998337    C    A    289.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340930    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
8    142146708    rs307772    T    C    1643.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.57;MQ0=0;QD=30.43;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_8_142146608_142146890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000519291    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1676,132,0
8    142151713    rs307766    C    T    75.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518347    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:108,9,0
8    142152442    rs307765    A    G    915.83    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.855;DB;DP=89;Dels=0.0;FS=8.758;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.319;QD=10.29;ReadPosRankSum=-0.185;SNPEFF_AMINO_ACID_CHANGE=M56V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142152399_142153107;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000518249    GT:AD:DP:GQ:PL    0/1:50,39:89:99:946,0,1518
8    142160829    rs35212078    T    G    212.11    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.225;DB;DP=31;Dels=0.0;FS=2.277;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=1.399;QD=6.84;ReadPosRankSum=1.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    0/1:20,11:31:99:242,0,551
8    142161064    rs3816063    C    T    664.79    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=4.31;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.09;MQ0=0;MQRankSum=1.21;QD=13.04;ReadPosRankSum=-0.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523015    GT:AD:DP:GQ:PL    0/1:26,25:51:99:695,0,696
8    142166214    rs555399    C    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520986    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:76,6,0
8    142166292    rs556236    A    G    36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=12.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520986    GT:AD:DP:GQ:PL    1/1:0,3:3:8.96:68,9,0
8    142166293    rs572830    C    G    36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=12.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520986    GT:AD:DP:GQ:PL    1/1:0,3:3:8.96:68,9,0
8    142167991    rs4961332    C    T    211.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
8    142168337    rs59830378    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:73,0,25
8    142170884    rs2289001    C    T    424.87    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=28;Dels=0.0;FS=1.583;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=15.17;ReadPosRankSum=-1.577;SNPEFF_AMINO_ACID_CHANGE=F370;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142170731_142170886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    0/1:13,14:28:99:455,0,370
8    142173356    rs428300    C    T    2078.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2112,163,0
8    142173689    rs2369612    A    T    102.84    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=14.69;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    0/1:2,5:7:61.94:133,0,62
8    142176280    rs2241735    G    A    2589.11    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=5.556;DB;DP=184;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2337;MQ=59.75;MQ0=0;MQRankSum=0.906;QD=14.07;ReadPosRankSum=-1.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    0/1:95,89:184:99:2619,0,2524
8    142176507    rs412706    T    C    1042.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521477    GT:AD:DP:GQ:PL    1/1:0,36:36:93.26:1076,93,0
8    142176584    rs62522182    C    T    256.35    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=25.63;ReadPosRankSum=-1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521477    GT:AD:DP:GQ:PL    0/1:2,8:10:36.17:286,0,36
8    142178718    rs57171090    C    T    70.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=8.77;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521477    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,133
8    142185580    rs12675070    G    A    451.77    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=44;Dels=0.0;FS=4.011;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=10.27;ReadPosRankSum=-2.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    0/1:26,18:44:99:482,0,870
8    142186573    rs307732    A    G    110.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.72;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520482    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,102
8    142186963    rs2241734    G    A    104.12    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=11.57;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520482    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,169
8    142188039    rs307731    C    T    109.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.63;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520482    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,138
8    142191032    rs2278448    T    G    53.19    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.592;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.254;QD=4.09;ReadPosRankSum=0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520482    GT:AD:DP:GQ:PL    0/1:10,3:13:83.18:83,0,351
8    142199400    rs3739226    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517985    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
8    142200467    rs1045303    G    A    954.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.72;MQ0=0;QD=26.52;SNPEFF_AMINO_ACID_CHANGE=P1030;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142200383_142200516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262585    GT:AD:DP:GQ:PL    1/1:0,36:36:78.22:988,78,0
8    142202847    rs28446884    G    A    193.75    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=22;Dels=0.0;FS=2.969;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.068;QD=8.81;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520571    GT:AD:DP:GQ:PL    0/1:13,9:22:99:224,0,424
8    142202856    rs6990186    C    T    609.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520571    GT:AD:DP:GQ:PL    1/1:1,16:17:48.16:642,48,0
8    142202884    rs7014062    T    C    351.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520571    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:385,30,0
8    142204326    rs1045248    C    G    795.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_AMINO_ACID_CHANGE=G1145;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142204132_142205895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424248    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:829,63,0
8    142221361    rs3739241    C    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000024061    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    142221414    rs3739240    G    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000024061    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
8    142222374    rs7017848    A    G    470.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_AMINO_ACID_CHANGE=G683;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142222296_142222655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433583    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:503,42,0
8    142222445    rs3739238    T    C    970.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=N660D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142222296_142222655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433583    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1004,75,0
8    142226108    rs892364    C    T    333.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.791;QD=30.36;ReadPosRankSum=1.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519986    GT:AD:DP:GQ:PL    1/1:1,10:11:3.48:364,3,0
8    142227083    rs7813723    T    C    262.99    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=20.23;ReadPosRankSum=0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519986    GT:AD:DP:GQ:PL    0/1:5,8:13:99:293,0,152
8    142228149    rs12679446    G    A    74.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.0;QD=6.23;ReadPosRankSum=-1.599;SNPEFF_AMINO_ACID_CHANGE=T472;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142228110_142229128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433583    GT:AD:DP:GQ:PL    0/1:8,4:12:99:105,0,171
8    142228686    rs3739237    G    A    30.50    QDFilter2    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.704;DB;DP=25;Dels=0.0;FS=2.114;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.185;QD=1.22;ReadPosRankSum=-0.556;SNPEFF_AMINO_ACID_CHANGE=L293;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142228110_142229128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433583    GT:AD:DP:GQ:PL    0/1:21,4:25:60.49:60,0,671
8    142228809    rs753779    T    C    2179.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=A252;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142228110_142229128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433583    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2212,169,0
8    142228909    rs753778    G    A    837.78    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=1.306;DB;DP=77;Dels=0.0;FS=0.917;HRun=0;HaplotypeScore=0.734;MQ=59.4;MQ0=0;MQRankSum=-0.806;QD=10.88;ReadPosRankSum=0.061;SNPEFF_AMINO_ACID_CHANGE=P219L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142228110_142229128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433583    GT:AD:DP:GQ:PL    0/1:45,32:77:99:868,0,1268
8    142229145    rs3739235    A    G    628.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519986    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:661,51,0
8    142229178    rs3739234    G    A    118.41    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=13;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=9.11;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519986    GT:AD:DP:GQ:PL    0/1:6,7:13:99:148,0,204
8    142229370    rs3824234    T    C    62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519986    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:94,9,0
8    142229834    rs2304280    G    A    41.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.736;QD=10.41;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=T117;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142229749_142229928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433583    GT:AD:DP:GQ:PL    0/1:2,2:4:33.20:72,0,33
8    142229891    rs2304279    A    G    81.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=27.19;SNPEFF_AMINO_ACID_CHANGE=I105;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142229749_142229928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000024061    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
8    142231504    rs4961339    A    G    58.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000024061    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:91,9,0
8    142231539    rs7004194    T    C    72.26    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.32;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000024061    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,111
8    142231636    rs7004350    T    C    185.99    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=22;Dels=0.0;FS=2.092;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.102;QD=8.45;ReadPosRankSum=-1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000024061    GT:AD:DP:GQ:PL    0/1:14,8:22:99:216,0,400
8    142232002    rs4961340    G    A    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000024061    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
8    142367559    rs11785629    G    A    408.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=22.69;SNPEFF_AMINO_ACID_CHANGE=P155;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142366600_142368047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377741    GT:AD:DP:GQ:PL    1/1:1,16:18:36.09:442,36,0
8    142445055    rs13250250    G    C    334.54    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DB;DP=25;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=8.8228;MQ=51.32;MQ0=0;MQRankSum=-0.521;QD=13.38;ReadPosRankSum=1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTP4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329397    GT:AD:DP:GQ:PL    0/1:11,14:25:99:365,0,357
8    142445062    rs79308669    T    TG    525.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=5;HaplotypeScore=178.74;IndelType=I;MQ=51.46;MQ0=0;QD=21.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTP4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329397    GT:AD:DP:GQ:PL    1/1:14,10:24:55.39:567,55,0
8    142445067    .    G    GA    468.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.773;DP=22;FS=0.0;HRun=0;HaplotypeScore=172.2447;IndelType=I;MQ=50.61;MQ0=0;MQRankSum=-0.211;QD=21.29;ReadPosRankSum=0.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTP4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329397    GT:AD:DP:GQ:PL    1/1:11,9:22:41.61:510,42,0
8    142445095    rs28592919    C    T    154.18    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=17;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=1.933;MQ=55.02;MQ0=0;MQRankSum=-1.22;QD=9.07;ReadPosRankSum=-2.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTP4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329397    GT:AD:DP:GQ:PL    0/1:7,10:17:99:184,0,248
8    142445538    rs11785585    T    C    81.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=3.9977;MQ=50.6;MQ0=0;MQRankSum=-1.589;QD=10.18;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTP4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329397    GT:AD:DP:GQ:PL    0/1:2,6:8:32.73:111,0,33
8    142445540    rs71322135    T    TGCCCGCGGCCCTGGCCC    1042.24    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=129.9331;IndelType=I;MQ=50.83;MQ0=0;MQRankSum=-0.747;QD=94.75;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTP4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329397    GT:AD:DP:GQ:PL    0/1:4,4:11:99:1081,0,117
8    142445680    rs11784911    A    T    60.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=15.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTP4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329397    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:90,0,28
8    142446923    rs11782383    C    T    113.85    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.23;ReadPosRankSum=0.198;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    0/1:2,5:8:54.77:144,0,55
8    142457961    rs13259488    A    C    130.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
8    142458053    rs6578185    A    G    389.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:422,33,0
8    142477752    rs11775650    T    C    490.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:523,45,0
8    142480610    rs4907398    C    T    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    142481307    rs72685438    G    A    1220.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9664;MQ=59.38;MQ0=0;QD=32.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1254,93,0
8    142483063    rs4442176    C    T    267.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:301,21,0
8    142484144    rs2126099    T    C    66.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,3:3:9:99,9,0
8    142484366    rs72543638    A    AG    362.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=23.4556;IndelType=I;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:405,27,0
8    142487856    rs11779508    A    G    374.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:407,33,0
8    142488662    rs2613643    C    T    200.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=33.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:233,18,0
8    142488837    rs12547980    G    A    266.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:299,24,0
8    142489981    rs2748417    C    T    462.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:496,39,0
8    142490079    rs2613641    G    A    1483.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.48;MQ0=0;QD=33.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1516,111,0
8    142490120    rs2748416    G    T    829.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=31.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:1,25:26:63.21:863,63,0
8    142490214    rs58431362    G    C    146.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;MQRankSum=1.036;QD=14.65;ReadPosRankSum=1.866;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    0/1:4,6:10:99:176,0,132
8    142505038    rs6578193    T    C    296.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.96;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:330,24,0
8    142505056    rs77451367    T    C    315.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521161    GT:AD:DP:GQ:PL    1/1:0,13:13:27.07:349,27,0
8    142505578    rs2748404    C    A    1790.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=G55C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142505438_142505583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521161    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1823,135,0
8    142506177    rs6990364    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521161    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    142506461    rs2613637    A    G    1120.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.0;SNPEFF_AMINO_ACID_CHANGE=L39P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_142506420_142506859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521161    GT:AD:DP:GQ:PL    1/1:0,32:32:87.25:1153,87,0
8    142517130    rs11464845    TG    T    121.49    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=12;FS=3.09;HRun=9;HaplotypeScore=67.2507;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=1.034;QD=10.12;ReadPosRankSum=0.896;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    0/1:1,7:12:18.30:160,0,18
8    142517222    rs2748421    A    G    308.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.189;DB;DP=20;Dels=0.0;FS=4.32;HRun=0;HaplotypeScore=2.5781;MQ=58.84;MQ0=0;MQRankSum=0.34;QD=15.41;ReadPosRankSum=2.306;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    0/1:10,10:20:99:338,0,278
8    142517227    rs2613648    C    T    239.11    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DB;DP=22;Dels=0.0;FS=1.74;HRun=3;HaplotypeScore=1.9997;MQ=58.95;MQ0=0;MQRankSum=-1.22;QD=10.87;ReadPosRankSum=3.132;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC100803.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430863    GT:AD:DP:GQ:PL    0/1:12,10:22:99:269,0,290
8    143310815    rs11167136    G    A    978.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1011,75,0
8    143352978    rs11777062    T    G    171.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:204,18,0
8    143353038    rs35674714    C    T    60.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=6.71;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=T268;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143351846_143353052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519651    GT:AD:DP:GQ:PL    0/1:6,3:9:90.39:90,0,166
8    143365913    rs5895710    GT    G    847.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=3;HaplotypeScore=80.3356;IndelType=D;MQ=60.35;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    1/1:3,24:27:72.22:889,72,0
8    143381810    rs7822013    T    C    483.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:517,39,0
8    143399752    rs4514123    T    C    118.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.8;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    0/1:2,4:6:49.39:149,0,49
8    143399860    rs56055628    G    T    328.77    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.087;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.44;MQ0=0;MQRankSum=0.334;QD=8.02;ReadPosRankSum=-0.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    0/1:25,16:41:99:359,0,730
8    143412110    rs56264224    T    C    41.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.45;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:72,0,30
8    143412377    rs34722595    T    C    278.92    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=16.41;ReadPosRankSum=-1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    0/1:6,11:17:99:309,0,196
8    143425271    rs67990630    C    A    118.96    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=-0.466;QD=10.81;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518720    GT:AD:DP:GQ:PL    0/1:6,5:11:99:149,0,183
8    143427178    rs33970858    C    G    294.91    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.282;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.898;QD=7.76;ReadPosRankSum=-1.12;SNPEFF_AMINO_ACID_CHANGE=R55P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143427104_143427253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    0/1:24,14:38:99:325,0,640
8    143436034    rs7814359    A    G    294.01    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=0.257;DB;DP=41;Dels=0.0;FS=4.613;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=1.746;QD=7.17;ReadPosRankSum=-0.609;SNPEFF_AMINO_ACID_CHANGE=F18L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143435998_143436124;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSNARE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307180    GT:AD:DP:GQ:PL    0/1:26,15:41:99:324,0,808
8    143558687    .    G    GGCCGAGGCAGCGGACT    2629.91    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.113;DP=26;FS=0.0;HRun=0;HaplotypeScore=251.3378;IndelType=I;MQ=47.66;MQ0=0;MQRankSum=-4.171;QD=101.15;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    0/1:14,7:26:99:2669,0,1221
8    143560504    rs13279697    A    G    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    143560555    rs13252518    T    C    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
8    143560895    rs12682337    G    A    489.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:522,42,0
8    143560898    rs12680973    T    C    460.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:494,39,0
8    143560996    rs66517676    AGCCAGCT    A    2991.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=339.43;IndelType=D;MQ=37.13;MQ0=0;QD=69.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:2,41:43:99:3034,123,0
8    143561206    rs4509377    G    A    1233.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1267,96,0
8    143563087    rs11782438    C    G    871.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:904,69,0
8    143563161    rs11776057    G    A    579.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:613,45,0
8    143565607    rs10875483    A    G    134.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
8    143570281    rs73714305    G    A    438.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:472,36,0
8    143570921    rs7825551    A    G    403.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:436,33,0
8    143599631    rs13281622    A    G    864.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.06;MQ0=0;QD=24.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,35:35:87.10:898,87,0
8    143599634    rs13254098    T    G    841.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.23;MQ0=0;QD=23.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,36:36:84.11:875,84,0
8    143599651    rs13281652    A    C    913.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.36;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,33:33:75.19:946,75,0
8    143599665    rs13254123    T    C    817.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.28;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,29:29:72.17:851,72,0
8    143599704    rs13281694    A    C    341.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.58;MQ0=0;QD=26.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:375,30,0
8    143599716    rs13278828    G    C    294.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.05;MQ0=0;QD=24.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:327,27,0
8    143599734    rs13281922    A    C    225.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.4;MQ0=0;QD=25.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:258,21,0
8    143599746    rs13281935    A    C    65.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=16.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:97,9,0
8    143599809    rs9802167    A    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    143599815    rs9802170    A    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
8    143603269    rs7463713    A    G    280.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:314,24,0
8    143603318    rs7462471    C    T    453.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:486,36,0
8    143603418    rs7460600    G    C    689.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.59;SNPEFF_AMINO_ACID_CHANGE=A1039;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143603326_143603476;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,25:25:57.18:723,57,0
8    143603668    rs7465185    T    C    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
8    143620822    rs7388198    T    C    253.45    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.667;QD=14.91;ReadPosRankSum=-0.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323289    GT:AD:DP:GQ:PL    0/1:5,12:17:99:283,0,125
8    143695144    rs2234911    G    A    158.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=31.74;SNPEFF_AMINO_ACID_CHANGE=D163;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143693845_143695833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356613    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
8    143746087    rs33951456    CCA    C    242.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=26.6847;IndelType=D;MQ=57.79;MQ0=0;QD=30.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503272    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:284,21,0
8    143762724    rs2976391    C    A    401.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301258    GT:AD:DP:GQ:PL    1/1:0,13:14:33.11:435,33,0
8    143781858    rs1048831    G    A    274.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.13;SNPEFF_AMINO_ACID_CHANGE=P29;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143781529_143782048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6K;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292430    GT:AD:DP:GQ:PL    1/1:0,11:13:24.06:308,24,0
8    143782044    rs2585174    A    G    311.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_AMINO_ACID_CHANGE=R91;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143781529_143782048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6K;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292430    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:344,27,0
8    143784500    rs2244163    T    G    1130.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518841    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1164,87,0
8    143784885    rs2244152    C    A    215.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518841    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
8    143808951    rs2585138    C    T    88.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_AMINO_ACID_CHANGE=L63;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143808621_143809277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf55;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336138    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
8    143845950    rs2585187    A    G    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.16;SNPEFF_AMINO_ACID_CHANGE=A64;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143845769_143846005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYNX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
8    143856967    rs2304398    C    G    66.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.57;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522906    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:96,0,30
8    143857265    rs2585125    G    T    282.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335822    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:316,24,0
8    143857441    rs3214637    A    AGG    594    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=26.5069;IndelType=I;MQ=62.65;MQ0=0;QD=49.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522906    GT:AD:DP:GQ:PL    1/1:0,11:12:36.12:636,36,0
8    143922162    rs2717570    T    C    52.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220940    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
8    143959067    rs80101721    G    A    75.01    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.949;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.19;MQ0=0;MQRankSum=-2.736;QD=3.57;ReadPosRankSum=-2.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP11B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292427    GT:AD:DP:GQ:PL    0/1:12,9:21:99:105,0,352
8    143959174    rs75717953    T    C    189.88    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DB;DP=62;Dels=0.0;FS=11.459;HRun=2;HaplotypeScore=0.0;MQ=54.13;MQ0=1;MQRankSum=-4.64;QD=3.06;ReadPosRankSum=0.114;SNPEFF_AMINO_ACID_CHANGE=R203G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143959173_143959250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP11B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377675    GT:AD:DP:GQ:PL    0/1:47,15:62:99:220,0,1578
8    143993315    rs3097    C    T    420.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522728    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
8    143994944    rs13252628    T    G    767.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.43;MQ0=0;QD=29.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP11B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323110    GT:AD:DP:GQ:PL    1/1:0,26:26:63.19:800,63,0
8    143994978    rs36018151    CA    C    506.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=5;HaplotypeScore=250.8315;IndelType=D;MQ=49.23;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP11B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323110    GT:AD:DP:GQ:PL    1/1:2,18:20:51.13:548,51,0
8    143995761    rs4536    C    T    538.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_AMINO_ACID_CHANGE=A291;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_143995680_143995834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP11B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323110    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:572,42,0
8    143998426    rs13268153    C    T    750.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522728    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:784,60,0
8    143998662    rs13276226    G    A    1011.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522728    GT:AD:DP:GQ:PL    1/1:0,31:31:81.24:1044,81,0
8    144124609    rs11136300    T    C    386.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.59;SNPEFF_AMINO_ACID_CHANGE=L39P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144124580_144124679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395172    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:419,33,0
8    144124878    rs35803677    C    T    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523099    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    144126244    rs4612316    T    C    316.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=26.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523099    GT:AD:DP:GQ:PL    1/1:0,12:12:30.07:350,30,0
8    144130550    rs12677862    C    G    251.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C8orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520786    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
8    144239660    rs7007949    G    A    291.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.029;QD=12.14;ReadPosRankSum=-0.837;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479685    GT:AD:DP:GQ:PL    0/1:12,12:24:99:321,0,409
8    144239859    rs10109061    A    G    991.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.294;DB;DP=70;Dels=0.0;FS=5.103;HRun=0;HaplotypeScore=1.8938;MQ=60.0;MQ0=0;MQRankSum=-1.339;QD=14.16;ReadPosRankSum=-1.28;SNPEFF_AMINO_ACID_CHANGE=C77;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144239331_144239902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430474    GT:AD:DP:GQ:PL    0/1:35,35:70:99:1021,0,1019
8    144240257    rs9694368    C    G    902.85    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=3.277;DB;DP=52;Dels=0.0;FS=2.666;HRun=1;HaplotypeScore=1.7675;MQ=59.11;MQ0=0;MQRankSum=0.861;QD=17.36;ReadPosRankSum=1.634;SNPEFF_AMINO_ACID_CHANGE=T50;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144240220_144240339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LY6H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430474    GT:AD:DP:GQ:PL    0/1:21,31:52:99:933,0,489
8    144295321    rs13253453    C    G    54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPIHBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330824    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
8    144332012    rs6558339    T    C    53.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=4.44;ReadPosRankSum=-0.929;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_8_144331860_144333510;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330701    GT:AD:DP:GQ:PL    0/1:8,4:12:83.28:83,0,241
8    144332082    rs11136275    T    C    154.33    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=22;Dels=0.0;FS=11.974;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.156;QD=7.02;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=S23;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144331860_144333510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330701    GT:AD:DP:GQ:PL    0/1:15,7:22:99:184,0,431
8    144351632    rs6558341    A    G    4060.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=P22;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144351530_144351690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340042    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4061,322,0
8    144357213    rs3817675    G    C    139.49    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.278;QD=11.62;ReadPosRankSum=-1.398;SNPEFF_AMINO_ACID_CHANGE=V97L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144357148_144357921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521682    GT:AD:DP:GQ:PL    0/1:5,7:12:99:169,0,103
8    144358381    rs1056148    G    A    83.30    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=58.33;MQ0=0;MQRankSum=1.743;QD=5.95;ReadPosRankSum=-0.581;SNPEFF_AMINO_ACID_CHANGE=A180T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144358067_144359099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLI4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340042    GT:AD:DP:GQ:PL    0/1:8,6:14:99:113,0,262
8    144378184    rs2235115    C    G    119.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_AMINO_ACID_CHANGE=G113;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144377910_144380231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF696;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330143    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
8    144378868    rs7386259    A    G    389.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_AMINO_ACID_CHANGE=R341;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144377910_144380231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF696;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330143    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:422,33,0
8    144391728    rs7386475    A    G    517.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.148;DB;DP=30;Dels=0.0;FS=1.805;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.122;QD=17.26;ReadPosRankSum=-0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329245    GT:AD:DP:GQ:PL    0/1:12,18:30:99:548,0,408
8    144397798    rs77177449    G    GGA    210.28    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=16.026;IndelType=I;MQ=56.12;MQ0=1;MQRankSum=-0.198;QD=26.29;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518951    GT:AD:DP:GQ:PL    0/1:3,5:7:58.78:249,0,59
8    144398029    rs13275896    A    G    171.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.567;QD=8.6;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518951    GT:AD:DP:GQ:PL    0/1:10,10:20:99:202,0,313
8    144398132    rs2293927    T    C    766.83    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=0.608;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.787;MQ=59.05;MQ0=0;MQRankSum=0.65;QD=15.65;ReadPosRankSum=-0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518951    GT:AD:DP:GQ:PL    0/1:24,25:49:99:797,0,661
8    144399856    rs3215410    TC    T    376.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=6;HaplotypeScore=106.9949;IndelType=D;MQ=60.67;MQ0=0;QD=23.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329245    GT:AD:DP:GQ:PL    1/1:2,14:16:39.10:419,39,0
8    144399885    rs61401831    A    C    202.09    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.77;MQ0=0;MQRankSum=0.696;QD=14.44;ReadPosRankSum=1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329245    GT:AD:DP:GQ:PL    0/1:5,9:14:99:232,0,136
8    144399886    rs2272636    G    T    210.72    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.77;MQ0=0;MQRankSum=-0.696;QD=15.05;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329245    GT:AD:DP:GQ:PL    0/1:5,9:14:99:241,0,134
8    144400065    rs2272635    C    T    345.97    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.764;DB;DP=17;Dels=0.0;FS=8.82;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.653;QD=20.35;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329245    GT:AD:DP:GQ:PL    0/1:6,11:17:99:376,0,148
8    144403449    rs61631623    G    A    202.12    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.688;DB;DP=21;Dels=0.0;FS=4.612;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=9.62;ReadPosRankSum=-0.253;SNPEFF_AMINO_ACID_CHANGE=G258;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144403371_144403556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519148    GT:AD:DP:GQ:PL    0/1:13,8:21:99:232,0,408
8    144403485    rs11544482    G    C    307.76    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.643;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.031;QD=13.38;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=R246;SNPEFF_CODON_CHANGE=cgC/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144403371_144403556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519148    GT:AD:DP:GQ:PL    0/1:10,13:23:99:338,0,312
8    144403617    .    C    T    143.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.99;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518007    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,103
8    144406043    rs67074137    C    A    132.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1824;MQ=57.66;MQ0=0;MQRankSum=1.098;QD=13.25;ReadPosRankSum=-0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518007    GT:AD:DP:GQ:PL    0/1:5,5:10:99:162,0,156
8    144406579    rs3812435    G    A    116.39    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=9;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-0.55;QD=12.93;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518007    GT:AD:DP:GQ:PL    0/1:5,4:9:91.50:146,0,91
8    144406627    rs3829018    G    A    353.78    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=22;Dels=0.0;FS=1.922;HRun=3;HaplotypeScore=0.5784;MQ=56.78;MQ0=0;MQRankSum=1.557;QD=16.08;ReadPosRankSum=-0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518007    GT:AD:DP:GQ:PL    0/1:9,13:22:99:384,0,210
8    144406705    rs11544484    C    T    440.53    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.488;QD=11.3;ReadPosRankSum=0.458;SNPEFF_AMINO_ACID_CHANGE=V158I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144406655_144406799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519148    GT:AD:DP:GQ:PL    0/1:23,16:39:99:471,0,673
8    144406926    rs13250865    T    C    51.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=10.2;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518007    GT:AD:DP:GQ:PL    0/1:2,3:5:67.84:81,0,68
8    144408616    rs3829019    G    A    590.86    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.477;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.233;QD=15.97;ReadPosRankSum=-0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522043    GT:AD:DP:GQ:PL    0/1:18,19:37:99:621,0,622
8    144411759    rs3812436    T    C    189.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.027;QD=13.55;ReadPosRankSum=0.201;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524092    GT:AD:DP:GQ:PL    0/1:7,7:14:99:220,0,238
8    144411767    rs2467894    C    A    134.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=11.25;ReadPosRankSum=-0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524092    GT:AD:DP:GQ:PL    0/1:6,6:12:99:165,0,203
8    144457678    rs72703712    G    A    120.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289013    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:153,12,0
8    144462169    rs3812440    A    G    550.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=27.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289013    GT:AD:DP:GQ:PL    1/1:0,20:20:48.12:584,48,0
8    144463267    rs13275994    C    T    128.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289013    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
8    144463430    rs138287158    C    T    84.98    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.372;QD=4.05;ReadPosRankSum=0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289013    GT:AD:DP:GQ:PL    0/1:16,5:21:99:115,0,443
8    144463686    rs3817720    C    T    441.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289013    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:475,36,0
8    144520147    rs2294117    G    A    113.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530603    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
8    144522387    rs2272754    G    T    190.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.88;SNPEFF_AMINO_ACID_CHANGE=S880*;SNPEFF_CODON_CHANGE=tCa/tAa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_8_144522211_144522533;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000262577    GT:AD:DP:GQ:PL    1/1:0,12:12:23.97:224,24,0
8    144522388    rs2272753    A    T    190.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.88;SNPEFF_AMINO_ACID_CHANGE=S880T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144522211_144522533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262577    GT:AD:DP:GQ:PL    1/1:0,12:12:23.97:224,24,0
8    144523018    rs2294115    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262577    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    144523323    rs2294114    G    A    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262577    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
8    144618379    rs11774857    A    G    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262577    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
8    144620183    rs4874147    T    C    1350.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9874;MQ=58.11;MQ0=0;QD=28.14;SNPEFF_AMINO_ACID_CHANGE=S452G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144620173_144621490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262577    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1384,111,0
8    144623574    rs2242093    T    C    342.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=28;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=1.14;QD=12.24;ReadPosRankSum=1.286;SNPEFF_AMINO_ACID_CHANGE=I6M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144623546_144623623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262577    GT:AD:DP:GQ:PL    0/1:14,14:28:99:373,0,310
8    144623735    rs2242092    G    C    71.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.94;ReadPosRankSum=-0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262577    GT:AD:DP:GQ:PL    0/1:1,3:4:23.22:102,0,23
8    144641753    rs4874151    A    C    921.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529854    GT:AD:DP:GQ:PL    1/1:0,33:34:87.18:954,87,0
8    144642178    rs11774948    T    C    281.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525721    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
8    144642986    rs11136298    T    C    123    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525721    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
8    144644583    rs1349806    G    C    66.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.09;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398882    GT:AD:DP:GQ:PL    0/1:3,3:6:91.74:97,0,92
8    144644787    rs1377663    T    A    144.42    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=12.03;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398882    GT:AD:DP:GQ:PL    0/1:7,5:12:99:174,0,216
8    144649968    rs13255489    C    T    156.76    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=14.25;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=A619T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144649956_144650058;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398882    GT:AD:DP:GQ:PL    0/1:5,6:11:99:187,0,125
8    144650550    rs10101426    T    C    31.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
8    144654249    rs10866911    G    A    397.22    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.205;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=16.55;ReadPosRankSum=-0.381;SNPEFF_AMINO_ACID_CHANGE=T134I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144654203_144654355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398882    GT:AD:DP:GQ:PL    0/1:10,14:24:99:427,0,295
8    144654255    rs4874153    A    G    718.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=V132A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144654203_144654355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398882    GT:AD:DP:GQ:PL    1/1:0,24:24:63.16:751,63,0
8    144654594    rs4873803    G    T    71.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=57.17;MQ0=0;MQRankSum=-1.159;QD=7.2;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=H97Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144654591_144655141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398882    GT:AD:DP:GQ:PL    0/1:6,4:10:99:102,0,139
8    144654693    rs4873804    G    C    122.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=8.72;ReadPosRankSum=-1.092;SNPEFF_AMINO_ACID_CHANGE=P64;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144654591_144655141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8orf73;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398882    GT:AD:DP:GQ:PL    0/1:8,6:14:99:152,0,254
8    144656754    rs4606077    T    C    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAPRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276844    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
8    144656765    rs1869434    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAPRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276844    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    144658711    rs872935    G    A    615.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_AMINO_ACID_CHANGE=L305;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144658602_144658742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAPRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276844    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:649,51,0
8    144659608    rs12678314    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317198    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    144660189    rs896953    A    G    418.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317198    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:451,36,0
8    144662353    rs1062391    G    A    705.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_AMINO_ACID_CHANGE=A169;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144662182_144662376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531621    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:739,54,0
8    144671244    rs4874160    C    A    305.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=R288;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144671161_144672251;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356793    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:338,27,0
8    144671685    rs6985081    G    C    129    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.8;SNPEFF_AMINO_ACID_CHANGE=D141E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144671161_144672251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356793    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
8    144671922    rs3812448    G    A    483.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=26.87;SNPEFF_AMINO_ACID_CHANGE=R110;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144671161_144672262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337369    GT:AD:DP:GQ:PL    1/1:0,18:18:39.13:517,39,0
8    144681777    rs10282929    G    T    67.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.54;SNPEFF_AMINO_ACID_CHANGE=M519I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144680074_144682485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIGD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321385    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
8    144687721    rs896961    C    T    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYCRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462036    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
8    144688736    rs2242090    C    G    54.10    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=3.86;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=K137N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144688637_144688789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYCRL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433751    GT:AD:DP:GQ:PL    0/1:10,4:14:84.10:84,0,295
8    144689146    rs2242089    C    T    433.24    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.175;DB;DP=46;Dels=0.0;FS=2.649;HRun=0;HaplotypeScore=0.9979;MQ=58.58;MQ0=0;MQRankSum=-0.838;QD=9.42;ReadPosRankSum=0.036;SNPEFF_AMINO_ACID_CHANGE=V112M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144689123_144689302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYCRL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433751    GT:AD:DP:GQ:PL    0/1:25,21:46:99:463,0,717
8    144695176    rs2242087    C    T    90.05    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.19;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525274    GT:AD:DP:GQ:PL    0/1:7,4:11:99:120,0,227
8    144695499    rs2242086    C    A    55.04    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.546;QD=4.59;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525274    GT:AD:DP:GQ:PL    0/1:9,3:12:85.03:85,0,161
8    144695867    rs6558377    A    G    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525274    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
8    144696203    rs4634659    T    C    170.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525274    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
8    144696473    rs185745400    C    T    418.88    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=39;Dels=0.0;FS=9.553;HRun=1;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=0.214;QD=10.74;ReadPosRankSum=0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525274    GT:AD:DP:GQ:PL    0/1:23,16:39:99:449,0,669
8    144697041    rs1049832    A    G    58.70    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.039;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.133;QD=3.26;ReadPosRankSum=-0.34;SNPEFF_AMINO_ACID_CHANGE=F102;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144696957_144697085;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSTA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425753    GT:AD:DP:GQ:PL    0/1:11,7:18:88.70:89,0,372
8    144732363    rs4875017    T    C    1990.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_AMINO_ACID_CHANGE=N107;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144731954_144735900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF623;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000501748    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2024,153,0
8    144732418    rs4874084    A    G    1946.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_AMINO_ACID_CHANGE=N126D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144731954_144735900;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF623;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000501748    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1979,147,0
8    144732450    rs3750204    G    A    860.66    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=62;Dels=0.0;FS=2.248;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-1.075;QD=13.88;ReadPosRankSum=0.902;SNPEFF_AMINO_ACID_CHANGE=S136;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144731954_144735900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF623;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000501748    GT:AD:DP:GQ:PL    0/1:32,30:62:99:891,0,860
8    144733805    rs12679735    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF623;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328466    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
8    144773094    rs55744427    C    T    110.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=13.83;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF707;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525619    GT:AD:DP:GQ:PL    0/1:3,5:8:99:141,0,103
8    144773147    rs56377635    C    T    262.20    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;MQRankSum=-0.537;QD=15.42;ReadPosRankSum=-1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF707;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525619    GT:AD:DP:GQ:PL    0/1:7,10:17:99:292,0,240
8    144775871    rs6987308    C    A    460.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.834;DB;DP=28;Dels=0.0;FS=1.52;HRun=0;HaplotypeScore=2.6616;MQ=56.8;MQ0=0;MQRankSum=-0.673;QD=16.45;ReadPosRankSum=1.648;SNPEFF_AMINO_ACID_CHANGE=L93I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144775841_144775997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF707;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530574    GT:AD:DP:GQ:PL    0/1:12,16:28:99:491,0,352
8    144776109    rs11786757    A    G    516.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.78;MQ0=0;QD=27.18;SNPEFF_AMINO_ACID_CHANGE=S139;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144775841_144776129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF707;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526315    GT:AD:DP:GQ:PL    1/1:0,19:19:48.07:549,48,0
8    144776713    rs7464270    A    C    132.09    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.01;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF707;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442058    GT:AD:DP:GQ:PL    0/1:5,6:11:99:162,0,127
8    144800004    rs12543136    G    A    131.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=18.85;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF707;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508587    GT:AD:DP:GQ:PL    0/1:2,5:7:44.42:162,0,44
8    144800552    rs6997797    C    T    446.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475376    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:479,39,0
8    144801243    rs12678428    C    T    66.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.03;ReadPosRankSum=-1.537;SNPEFF_AMINO_ACID_CHANGE=P166;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144801163_144801326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338033    GT:AD:DP:GQ:PL    0/1:3,3:6:72.73:96,0,73
8    144801681    rs11778657    G    A    559.47    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.292;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.292;QD=20.72;ReadPosRankSum=-0.611;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388913    GT:AD:DP:GQ:PL    0/1:8,19:27:99:589,0,246
8    144808003    rs4875045    G    C    381.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338033    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:415,30,0
8    144808747    rs11136321    G    A    142.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=11.88;ReadPosRankSum=1.813;SNPEFF_AMINO_ACID_CHANGE=L962;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144806103_144810893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388913    GT:AD:DP:GQ:PL    0/1:6,6:12:99:173,0,172
8    144809804    rs13254035    G    A    124.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=Y609;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144806103_144810893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388913    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
8    144810970    rs11136322    C    G    124.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=7.782;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=12.41;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388913    GT:AD:DP:GQ:PL    0/1:5,5:10:99:154,0,112
8    144811278    rs9969456    G    A    1033.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=78;Dels=0.0;FS=1.868;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-0.6;QD=13.25;ReadPosRankSum=-1.989;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388913    GT:AD:DP:GQ:PL    0/1:39,39:78:99:1063,0,1158
8    144811338    rs9969600    C    G    2382.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=3.2762;MQ=59.38;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=Q201H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144811329_144811493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388913    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2415,181,0
8    144854709    rs7835816    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-429J17.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529743    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    144873666    rs9314416    G    C    234.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546337    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:267,21,0
8    144873779    rs9314417    G    A    199.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546337    GT:AD:DP:GQ:PL    1/1:0,9:9:21.03:232,21,0
8    144873997    rs6982642    A    C    35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=8.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546337    GT:AD:DP:GQ:PL    1/1:0,4:4:6.01:66,6,0
8    144874366    rs7461245    T    C    108.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546337    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:141,12,0
8    144876159    rs7460093    G    A    65.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.34;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320476    GT:AD:DP:GQ:PL    0/1:4,3:7:95.36:95,0,137
8    144877835    rs34691721    G    A    34.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320476    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
8    144885580    rs13281371    A    G    241.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.83;SNPEFF_AMINO_ACID_CHANGE=F1111;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144885553_144885741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377533    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:274,24,0
8    144886628    rs34099611    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531942    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    144887656    rs7830442    A    G    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320476    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
8    144889172    rs10866915    A    G    464.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=T27;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144889094_144889183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531942    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:497,36,0
8    144890873    rs10098508    A    T    604.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=V43E;SNPEFF_CODON_CHANGE=gTa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144890779_144891195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377539    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:638,48,0
8    144891768    rs118022661    C    T    645.93    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.687;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=58.98;MQ0=0;MQRankSum=0.423;QD=9.5;ReadPosRankSum=1.15;SNPEFF_AMINO_ACID_CHANGE=A470T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144891721_144891888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377533    GT:AD:DP:GQ:PL    0/1:41,26:68:99:676,0,1097
8    144893084    rs6558394    G    A    294.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=1.408;QD=19.65;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=P341L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144893076_144893242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377533    GT:AD:DP:GQ:PL    0/1:5,10:15:99:325,0,126
8    144894496    rs4875060    G    A    2542.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.45;MQ0=0;QD=30.27;SNPEFF_AMINO_ACID_CHANGE=T201;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144894436_144894554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRIB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377533    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2576,190,0
8    144894641    rs4875061    C    T    234    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUF60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313352    GT:AD:DP:GQ:PL    1/1:0,8:8:24.03:267,24,0
8    144895553    rs13251492    G    A    617.89    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.88;DB;DP=52;Dels=0.02;FS=2.455;HRun=2;HaplotypeScore=1.933;MQ=59.65;MQ0=0;MQRankSum=0.407;QD=11.66;ReadPosRankSum=-1.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUF60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313352    GT:AD:DP:GQ:PL    0/1:28,23:52:99:648,0,801
8    144900756    rs7833632    A    G    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUF60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526151    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
8    144902682    rs4874103    T    C    827.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.04;QD=33.1;ReadPosRankSum=-1.595;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUF60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526151    GT:AD:DP:GQ:PL    1/1:1,24:25:30.65:861,31,0
8    144917790    rs11774027    A    G    54.53    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=7.79;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NRBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530347    GT:AD:DP:GQ:PL    0/1:3,4:7:84.52:85,0,104
8    144919049    rs34303577    C    T    288.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.769;DB;DP=24;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=12.01;ReadPosRankSum=-2.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NRBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530347    GT:AD:DP:GQ:PL    0/1:12,12:24:99:318,0,426
8    144940117    rs4977192    C    A    74.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=44.21;MQ0=0;MQRankSum=0.358;QD=6.81;ReadPosRankSum=0.358;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:6,5:11:69.41:105,0,69
8    144940222    rs6990098    A    C    430.44    MQFilter40    AB=0.186;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=113;Dels=0.0;FS=12.639;HRun=0;HaplotypeScore=4.0381;MQ=35.08;MQ0=0;MQRankSum=-4.77;QD=3.81;ReadPosRankSum=-5.119;SNPEFF_AMINO_ACID_CHANGE=L2400;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144939497_144947466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:21,92:113:99:460,0,666
8    144940230    rs7005697    G    C    1127.16    MQFilter40    AB=0.148;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.527;DB;DP=128;Dels=0.0;FS=14.849;HRun=0;HaplotypeScore=4.0381;MQ=37.36;MQ0=0;MQRankSum=-3.375;QD=8.81;ReadPosRankSum=-6.265;SNPEFF_AMINO_ACID_CHANGE=L2398V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144939497_144947466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:19,109:128:99:1157,0,515
8    144940300    rs4977191    G    A    4229.13    PASS    AB=0.251;AC=1;AF=0.50;AN=2;BaseQRankSum=2.695;DB;DP=228;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.4789;MQ=46.64;MQ0=0;MQRankSum=-3.296;QD=18.55;ReadPosRankSum=-0.378;SNPEFF_AMINO_ACID_CHANGE=R2374;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144939497_144947466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:57,170:228:99:4229,0,1124
8    144940779    rs11781942    G    A    844.87    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.319;DB;DP=72;Dels=0.0;FS=5.606;HRun=0;HaplotypeScore=1.6553;MQ=58.83;MQ0=0;MQRankSum=0.174;QD=11.73;ReadPosRankSum=-0.414;SNPEFF_AMINO_ACID_CHANGE=R2215C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144939497_144947466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:37,35:72:99:875,0,989
8    144944638    rs56118826    G    A    108.15    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.588;QD=6.76;ReadPosRankSum=-2.117;SNPEFF_AMINO_ACID_CHANGE=G928;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144939497_144947466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:9,7:16:99:138,0,283
8    144945191    rs12543389    T    C    837.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.14;DB;DP=56;Dels=0.0;FS=5.672;HRun=0;HaplotypeScore=0.6651;MQ=51.06;MQ0=2;MQRankSum=0.703;QD=14.95;ReadPosRankSum=-0.169;SNPEFF_AMINO_ACID_CHANGE=Y744C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144939497_144947466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:28,28:56:99:867,0,747
8    144945792    rs13255110    T    C    249.57    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=16;Dels=0.0;FS=2.115;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=15.6;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=K544E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144939497_144947466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:7,9:16:99:280,0,224
8    144946252    rs11136330    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=L390;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144939497_144947466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525985    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
8    144990335    rs1065837    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527096    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
8    144990528    rs7014582    A    G    294.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=22.67;SNPEFF_AMINO_ACID_CHANGE=A4455;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,13:13:30.06:328,30,0
8    144991176    rs6558405    T    C    928.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2421;MQ=59.28;MQ0=0;QD=29.01;SNPEFF_AMINO_ACID_CHANGE=S4239;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,32:32:75.23:961,75,0
8    144992103    rs6558406    T    C    505.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=T3930;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:539,42,0
8    144992361    rs7822511    T    C    148.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;QD=18.52;SNPEFF_AMINO_ACID_CHANGE=P3844;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:181,15,0
8    144992862    rs7819099    A    G    767.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=A3677;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:800,63,0
8    144993324    rs6984820    C    T    3551    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DB;DP=115;Dels=0.0;FS=3.259;HRun=0;HaplotypeScore=2.8325;MQ=59.19;MQ0=0;MQRankSum=1.476;QD=30.88;ReadPosRankSum=0.738;SNPEFF_AMINO_ACID_CHANGE=T3523;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:1,113:115:99:3551,237,0
8    144993377    rs6992333    A    G    2512.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7313;MQ=59.7;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=L3506;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2545,202,0
8    144995494    rs6558407    C    T    1793.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=R2800H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:1,57:58:99:1827,141,0
8    144995736    rs11777402    G    A    950.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=30.67;SNPEFF_AMINO_ACID_CHANGE=N2719;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:984,78,0
8    144995939    rs35723243    G    A    477.41    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.345;DB;DP=32;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=1.7219;MQ=59.28;MQ0=0;MQRankSum=0.998;QD=14.92;ReadPosRankSum=-0.038;SNPEFF_AMINO_ACID_CHANGE=R2652W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    0/1:13,19:32:99:507,0,371
8    144996029    rs7833924    A    G    238.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.79;SNPEFF_AMINO_ACID_CHANGE=S2622P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:271,21,0
8    144996408    rs11778026    T    G    282.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=A2495;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144989321_144996563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:316,24,0
8    144996598    rs11786903    G    A    441.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:475,36,0
8    144996635    rs11786934    G    A    287.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:321,24,0
8    144997656    rs7016416    C    T    173.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_AMINO_ACID_CHANGE=A2115;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144996672_145000052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,9:9:15.05:207,15,0
8    144997927    rs7002002    G    A    148.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.77;SNPEFF_AMINO_ACID_CHANGE=A2025V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144996672_145000052;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:181,15,0
8    144998169    rs1140522    C    T    233.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=25.91;SNPEFF_AMINO_ACID_CHANGE=A1944;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144996672_145000052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:266,21,0
8    144998190    rs2857829    A    G    207.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=23.02;SNPEFF_AMINO_ACID_CHANGE=A1937;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144996672_145000052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,9:9:21.03:240,21,0
8    144999417    rs55836855    C    T    79.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.4;SNPEFF_AMINO_ACID_CHANGE=A1528;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144996672_145000052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
8    144999621    rs55646585    C    T    332.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=A1460;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144996672_145000052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:365,30,0
8    144999642    rs56117011    A    C    348.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=31.72;SNPEFF_AMINO_ACID_CHANGE=A1453;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144996672_145000052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:382,30,0
8    144999684    rs35916068    A    G    225.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.56;SNPEFF_AMINO_ACID_CHANGE=A1439;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_144996672_145000052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:259,21,0
8    145000809    rs7017789    G    A    272.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:306,24,0
8    145000898    rs56401829    A    G    925.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,29:29:84.19:959,84,0
8    145001031    rs55895668    T    C    912.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.42;MQ0=0;MQRankSum=-1.529;QD=19.42;ReadPosRankSum=0.102;SNPEFF_AMINO_ACID_CHANGE=H1290R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145000952_145001050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:2,44:47:45.01:946,45,0
8    145001267    rs62522552    G    A    164.78    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.372;DB;DP=15;Dels=0.0;FS=2.081;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-1.215;QD=10.99;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    0/1:8,7:15:99:195,0,210
8    145001300    rs55984967    T    A    554.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=26.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,21:21:45.13:588,45,0
8    145001311    rs55812715    T    C    649.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=55.45;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,20:21:54.17:682,54,0
8    145001372    rs11782890    T    C    1285.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1318,102,0
8    145001509    rs11136333    T    C    1544.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.237;DB;DP=56;Dels=0.0;FS=5.482;HRun=0;HaplotypeScore=3.6919;MQ=58.5;MQ0=0;MQRankSum=0.186;QD=27.58;ReadPosRankSum=0.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1578,101,0
8    145001588    rs11136334    C    T    512.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.714;QD=30.16;ReadPosRankSum=-0.51;SNPEFF_AMINO_ACID_CHANGE=R1217Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145001578_145001934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:1,16:17:11.16:545,11,0
8    145001784    rs3135109    A    G    132.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=22.1;SNPEFF_AMINO_ACID_CHANGE=L1152;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145001578_145001934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:165,12,0
8    145002283    rs11993233    A    G    66.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528025    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:99,9,0
8    145003777    rs11136335    G    A    410.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.55;MQ0=0;QD=25.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528025    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:444,36,0
8    145004546    rs11780911    G    A    166.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:200,15,0
8    145005688    rs35671527    A    AC    155.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=5;HaplotypeScore=9.2989;IndelType=I;MQ=58.43;MQ0=0;QD=31.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
8    145006790    rs10866916    T    C    685.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=25.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,27:27:63.15:719,63,0
8    145007187    rs11136336    G    A    250.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=A472V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145006961_145007279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:283,24,0
8    145007534    rs7003580    C    T    708.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,26:26:54.18:741,54,0
8    145007947    rs6989119    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
8    145007989    rs11136337    A    G    46.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
8    145008342    rs11782331    C    A    463.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:497,36,0
8    145008443    rs11783772    A    T    551.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:585,45,0
8    145008560    rs11783799    A    G    442.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=D333;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145008486_145008613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398774    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:475,39,0
8    145008706    rs11782433    C    T    999.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1032,81,0
8    145008931    rs6994460    G    C    972.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=27.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,36:36:84.25:1005,84,0
8    145009593    rs6983908    A    C    431.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527816    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:465,39,0
8    145009610    rs11784762    A    G    380.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527816    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:413,33,0
8    145010305    rs6988767    A    G    161.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532346    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
8    145011204    rs6993938    A    G    842.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=A103;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145011147_145011239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526416    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:875,69,0
8    145012466    rs11136338    A    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:78,6,0
8    145012777    rs7823393    C    G    1698.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322810    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1731,129,0
8    145057852    rs76806097    C    T    74.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.97;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=E341;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145057335_145057979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PARP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534861    GT:AD:DP:GQ:PL    0/1:2,3:5:61.32:105,0,61
8    145057868    rs11544989    A    G    196.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.62;SNPEFF_AMINO_ACID_CHANGE=V336A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145057335_145057979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PARP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534861    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:230,18,0
8    145058037    rs11989052    A    G    291.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PARP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313059    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
8    145058352    rs74593295    G    T    228.89    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.165;DB;DP=24;Dels=0.0;FS=4.129;HRun=0;HaplotypeScore=0.7887;MQ=59.03;MQ0=0;MQRankSum=-2.803;QD=9.54;ReadPosRankSum=0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PARP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313059    GT:AD:DP:GQ:PL    0/1:15,9:24:99:259,0,418
8    145058539    rs80304851    T    C    183.31    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.271;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.39;QD=6.32;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=S213G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145058378_145058599;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PARP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534861    GT:AD:DP:GQ:PL    0/1:19,10:29:99:213,0,619
8    145058986    rs11136343    A    G    1230.95    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.693;DB;DP=118;Dels=0.0;FS=4.555;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=10.43;ReadPosRankSum=-0.163;SNPEFF_AMINO_ACID_CHANGE=L101P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145058712_145059496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PARP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534861    GT:AD:DP:GQ:PL    0/1:68,50:118:99:1261,0,2221
8    145059425    rs11136344    T    C    404.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_AMINO_ACID_CHANGE=I164V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145058896_145059496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PARP10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313059    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:437,36,0
8    145060112    rs11136345    G    A    434.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=H71;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145059889_145060143;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PARP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313028    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:468,36,0
8    145066004    rs67714660    C    G    1244.22    PASS    AB=0.058;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.861;DB;DP=52;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9789;MQ=57.75;MQ0=0;MQRankSum=1.141;QD=23.93;ReadPosRankSum=0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRINA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530898    GT:AD:DP:GQ:PL    0/1:3,49:52:2.62:1273,0,3
8    145066853    rs56261297    C    T    905.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRINA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525513    GT:AD:DP:GQ:PL    1/1:0,29:29:72.21:938,72,0
8    145066886    rs13277282    A    G    735.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.28;SNPEFF_AMINO_ACID_CHANGE=L312;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145066860_145067583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRINA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537637    GT:AD:DP:GQ:PL    1/1:0,26:26:54.18:768,54,0
8    145086876    rs60050811    T    C    573.72    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.229;QD=15.94;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=S65P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145086582_145086894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377470    GT:AD:DP:GQ:PL    0/1:14,22:36:99:604,0,465
8    145095381    rs75130868    G    A    479.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=27;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=-1.028;QD=17.75;ReadPosRankSum=-0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377470    GT:AD:DP:GQ:PL    0/1:9,18:27:99:509,0,251
8    145106938    rs71643811    GCC    G    277.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=6;HaplotypeScore=37.3423;IndelType=D;MQ=62.13;MQ0=0;QD=27.72;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_8_145106817_145106940;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=OPLAH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000426825    GT:AD:DP:GQ:PL    1/1:2,8:10:24.08:319,24,0
8    145107795    rs11136253    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_AMINO_ACID_CHANGE=A1009;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145107669_145107803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=OPLAH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426825    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
8    145110901    rs7459752    G    A    77.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=OPLAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426825    GT:AD:DP:GQ:PL    0/1:2,4:6:67.83:107,0,68
8    145111979    rs72695427    G    A    66.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.684;QD=8.32;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=D526;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145111851_145112021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=OPLAH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426825    GT:AD:DP:GQ:PL    0/1:5,3:8:96.59:97,0,132
8    145150832    rs7820984    A    G    878.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=28.35;SNPEFF_AMINO_ACID_CHANGE=M76V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145150736_145150932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318911    GT:AD:DP:GQ:PL    1/1:0,31:31:75.20:912,75,0
8    145151665    rs75325545    TGG    T    335.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=319.4852;IndelType=D;MQ=35.66;MQ0=0;QD=30.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528618    GT:AD:DP:GQ:PL    1/1:0,9:11:30.09:377,30,0
8    145151668    .    CAGTGGGCATGTGGAATACTTCTCCA    C    1791.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;FS=0.0;HRun=0;HaplotypeScore=325.9403;IndelType=D;MQ=35.66;MQ0=0;MQRankSum=-1.739;QD=162.83;ReadPosRankSum=1.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528618    GT:AD:DP:GQ:PL    1/1:2,9:11:28.61:1833,29,0
8    145160646    rs11136256    T    C    1702.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=29.87;SNPEFF_AMINO_ACID_CHANGE=T20;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145160543_145160669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322428    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1736,135,0
8    145161823    rs11546144    G    A    322.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=G236R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145161738_145161866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322428    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:356,27,0
8    145161896    rs13263342    T    C    244.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_AMINO_ACID_CHANGE=L78P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145161738_145162295;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534811    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
8    145163414    rs4977196    C    G    47.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.96;SNPEFF_AMINO_ACID_CHANGE=R149G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145163219_145163847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA1875;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323662    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
8    145163647    rs4977195    T    C    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_AMINO_ACID_CHANGE=R226;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145163219_145163847;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA1875;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323662    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
8    145164617    rs13281660    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_AMINO_ACID_CHANGE=A460;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145164238_145164937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA1875;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323662    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    145164847    rs13250446    A    G    413.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=E537G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145164238_145164937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA1875;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323662    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:447,33,0
8    145166134    rs55908964    C    G    330.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA1875;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533108    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:363,27,0
8    145216008    rs6420182    G    A    473.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398656    GT:AD:DP:GQ:PL    1/1:0,15:15:42.10:506,42,0
8    145223191    rs6982878    G    A    367.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
8    145223288    rs34819224    C    T    597.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.99;MQ0=0;QD=25.99;SNPEFF_AMINO_ACID_CHANGE=A38V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145223198_145223343;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:1,22:23:48.15:631,48,0
8    145223499    rs6558308    G    A    125.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
8    145234508    rs7842771    G    C    178.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:212,18,0
8    145245631    rs6558318    T    C    1597.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=59.52;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1631,126,0
8    145245944    rs10108542    A    G    257.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:291,21,0
8    145247168    rs6988451    G    A    138.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:171,12,0
8    145254159    rs7464776    T    C    107.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
8    145254359    rs7460930    C    G    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    145255203    rs6558319    A    G    129.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
8    145267725    rs66506549    C    T    139.80    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=23.3;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    0/1:1,5:6:15.39:170,0,15
8    145268174    rs7846174    G    A    656.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326134    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:689,51,0
8    145512596    .    G    A    33.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.71;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307404    GT:AD:DP:GQ:PL    0/1:2,3:5:53.22:64,0,53
8    145537328    rs62530368    T    G    244.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332324    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:278,24,0
8    145542375    rs55907012    T    C    162.13    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=13;Dels=0.0;FS=2.463;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.47;ReadPosRankSum=0.259;SNPEFF_AMINO_ACID_CHANGE=K152R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145542362_145542414;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DGAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332324    GT:AD:DP:GQ:PL    0/1:6,7:13:99:192,0,175
8    145557497    rs7013127    A    C    77.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.8;SNPEFF_AMINO_ACID_CHANGE=S133A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145556724_145557778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332135    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
8    145577824    rs880701    C    G    353.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331890    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:386,30,0
8    145577829    rs880702    A    C    356.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331890    GT:AD:DP:GQ:PL    1/1:0,11:11:33.07:389,33,0
8    145577999    rs2272664    T    A    251.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331890    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
8    145579943    rs4993864    C    A    72.33    MQFilter40;QDFilter2;SnpCluster    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.613;DB;DP=38;Dels=0.0;FS=5.085;HRun=1;HaplotypeScore=0.734;MQ=36.86;MQ0=0;MQRankSum=-3.255;QD=1.9;ReadPosRankSum=2.389;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529279    GT:AD:DP:GQ:PL    0/1:23,15:38:99:102,0,456
8    145579950    rs59367523    GA    G    486.11    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.931;DB;DP=35;FS=5.334;HRun=1;HaplotypeScore=625.813;IndelType=D;MQ=30.49;MQ0=0;MQRankSum=1.142;QD=13.89;ReadPosRankSum=0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529279    GT:AD:DP:GQ:PL    0/1:19,16:35:99:525,0,716
8    145579950    rs4993863    G    A    196.17    MQFilter40;SnpCluster    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=35;Dels=0.0;FS=5.294;HRun=1;HaplotypeScore=0.734;MQ=30.49;MQ0=0;MQRankSum=-1.142;QD=5.6;ReadPosRankSum=1.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529279    GT:AD:DP:GQ:PL    0/1:16,19:35:99:226,0,155
8    145579953    rs4993862    T    A    240.38    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.2;MQ0=0;QD=7.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529279    GT:AD:DP:GQ:PL    1/1:0,19:34:24.07:273,24,0
8    145579954    rs4993861    G    A    199.46    MQFilter40;SnpCluster    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.069;DB;DP=34;Dels=0.0;FS=8.821;HRun=0;HaplotypeScore=0.0;MQ=30.2;MQ0=0;MQRankSum=-0.416;QD=5.87;ReadPosRankSum=2.081;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529279    GT:AD:DP:GQ:PL    0/1:15,19:34:99:229,0,131
8    145579962    rs77494279    C    T    99.41    MQFilter40;SnpCluster    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=2.345;DB;DP=31;Dels=0.0;FS=5.822;HRun=0;HaplotypeScore=0.0;MQ=31.05;MQ0=0;MQRankSum=-1.247;QD=3.21;ReadPosRankSum=-2.895;SNPEFF_AMINO_ACID_CHANGE=R402Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145579960_145580191;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455319    GT:AD:DP:GQ:PL    0/1:21,10:31:99:129,0,288
8    145579964    rs75159950    A    G    76.81    MQFilter40;SnpCluster    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DB;DP=31;Dels=0.0;FS=3.773;HRun=1;HaplotypeScore=0.0;MQ=31.05;MQ0=0;MQRankSum=-0.946;QD=2.48;ReadPosRankSum=-4.113;SNPEFF_AMINO_ACID_CHANGE=C401;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145579960_145580191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455319    GT:AD:DP:GQ:PL    0/1:21,10:31:99:107,0,302
8    145579967    rs77157066    T    C    69.02    MQFilter40;SnpCluster    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.329;DB;DP=31;Dels=0.0;FS=6.914;HRun=0;HaplotypeScore=0.0;MQ=32.19;MQ0=0;MQRankSum=0.544;QD=2.23;ReadPosRankSum=-3.416;SNPEFF_AMINO_ACID_CHANGE=P400;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145579960_145580191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455319    GT:AD:DP:GQ:PL    0/1:22,9:31:99:99,0,324
8    145580535    rs61746974    C    G    444.32    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.859;DB;DP=52;Dels=0.0;FS=2.481;HRun=0;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=0.18;QD=8.54;ReadPosRankSum=1.739;SNPEFF_AMINO_ACID_CHANGE=G265A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145580468_145580575;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455319    GT:AD:DP:GQ:PL    0/1:31,21:52:99:474,0,962
8    145580984    rs2272666    A    G    238.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530687    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
8    145581557    rs2280840    G    A    80.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FBXL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331890    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
8    145582839    rs3817681    T    C    337.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR172A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329994    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:370,30,0
8    145603114    rs6599528    A    C    668.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_AMINO_ACID_CHANGE=R17S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145603076_145603179;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308860    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:702,54,0
8    145615776    rs1383095    G    A    30.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=10.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349769    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:62,6,0
8    145617253    rs2977837    G    A    802.26    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.07;MQ0=0;MQRankSum=0.044;QD=17.44;ReadPosRankSum=1.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526833    GT:AD:DP:GQ:PL    0/1:21,25:46:99:832,0,600
8    145618309    rs1052951    G    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526833    GT:AD:DP:GQ:PL    0/1:2,2:4:67.17:72,0,67
8    145618312    rs1052952    G    A    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526833    GT:AD:DP:GQ:PL    0/1:2,2:4:67.59:68,0,68
8    145618862    rs2272661    C    G    34.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=4.93;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308860    GT:AD:DP:GQ:PL    0/1:4,3:7:64.51:65,0,133
8    145620296    rs2280837    C    G    611    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308860    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:644,51,0
8    145621556    rs2280836    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308860    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
8    145622923    rs2977835    T    C    404.33    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.561;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=59.25;MQ0=0;MQRankSum=-0.187;QD=13.04;ReadPosRankSum=1.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308860    GT:AD:DP:GQ:PL    0/1:16,15:31:99:434,0,456
8    145623098    rs2977834    T    C    263.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=22;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.182;QD=11.97;ReadPosRankSum=-1.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADCK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308860    GT:AD:DP:GQ:PL    0/1:11,11:22:99:293,0,365
8    145623881    .    C    CCCCAGGT    2476.18    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.775;DP=69;FS=5.136;HRun=0;HaplotypeScore=399.1751;IndelType=I;MQ=53.95;MQ0=0;MQRankSum=-2.915;QD=35.89;ReadPosRankSum=0.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527916    GT:AD:DP:GQ:PL    0/1:44,24:69:99:2515,0,1993
8    145623963    rs4317614    G    A    779.64    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=71;Dels=0.0;FS=0.942;HRun=0;HaplotypeScore=1.6483;MQ=56.13;MQ0=0;MQRankSum=-1.428;QD=10.98;ReadPosRankSum=-0.911;SNPEFF_AMINO_ACID_CHANGE=D568;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145623915_145624028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPSF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349769    GT:AD:DP:GQ:PL    0/1:37,34:71:99:810,0,1027
8    145624640    rs2293963    C    T    31.45    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=14;Dels=0.0;FS=6.69;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.401;QD=2.25;ReadPosRankSum=-1.401;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531042    GT:AD:DP:GQ:PL    0/1:11,3:14:61.44:61,0,371
8    145625283    rs2291135    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531042    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
8    145638811    rs116260554    C    A    36.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526658    GT:AD:DP:GQ:PL    0/1:2,2:4:59.52:66,0,60
8    145639106    rs2928381    C    T    34.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526658    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:64,0,33
8    145639320    rs736676    G    C    169.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526658    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
8    145639521    rs4992316    T    C    76.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526658    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:109,9,0
8    145639726    rs2272662    T    C    31.55    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=13;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=1.7219;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=2.43;ReadPosRankSum=-1.461;SNPEFF_AMINO_ACID_CHANGE=T332A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145639646_145639818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276833    GT:AD:DP:GQ:PL    0/1:8,5:13:61.54:62,0,209
8    145640306    rs11779952    G    A    807.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=45;Dels=0.0;FS=4.651;HRun=0;HaplotypeScore=0.8321;MQ=59.49;MQ0=0;MQRankSum=-0.013;QD=17.95;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276833    GT:AD:DP:GQ:PL    0/1:18,27:45:99:838,0,452
8    145640411    rs2977838    A    G    1410.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=31.34;SNPEFF_AMINO_ACID_CHANGE=W157R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145640358_145640494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526658    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1443,108,0
8    145641328    rs17855765    C    T    369.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_AMINO_ACID_CHANGE=A114T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145641194_145641475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301305    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:402,30,0
8    145641564    rs2280839    T    G    284.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_AMINO_ACID_CHANGE=E10A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145641194_145641896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276833    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:317,24,0
8    145642002    rs2280838    C    T    232.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.08;SNPEFF_AMINO_ACID_CHANGE=A58T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145641982_145642279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301305    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:266,21,0
8    145649781    rs2928377    A    T    243.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:276,21,0
8    145651262    rs2272658    T    C    109.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
8    145655572    rs4082353    T    G    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=16.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
8    145655622    rs4082352    T    C    45.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=11.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:76,6,0
8    145656658    rs13258903    C    T    209.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
8    145657474    rs13275214    A    G    163.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
8    145657518    rs13249053    T    C    558.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:591,48,0
8    145657958    rs12542502    C    T    115.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
8    145663814    rs13255086    A    G    253.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:286,27,0
8    145665407    rs2229315    C    T    760.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.95;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=G493S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145665404_145665593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,21:22:60.19:793,60,0
8    145665516    rs2306383    T    C    1620.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8606;MQ=58.05;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=L456;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145665404_145665593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1654,126,0
8    145665637    rs2620650    A    G    828.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.23;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:861,66,0
8    145665699    rs2721188    C    T    652.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:686,51,0
8    145665761    rs2229313    G    A    531.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.07;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=A421;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145665734_145665859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:564,42,0
8    145666578    rs2242266    T    C    261.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:295,27,0
8    145667354    rs2242265    C    A    567.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:600,45,0
8    145667405    rs2242264    C    G    785.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,27:27:60.19:818,60,0
8    145668042    rs741969    G    A    1942.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=30.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TONSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409379    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1975,150,0
8    145677973    rs2256094    C    T    163.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438911    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
8    145678020    rs1871538    C    T    87.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438911    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
8    145678533    rs148393654    C    T    63.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=9.1;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438911    GT:AD:DP:GQ:PL    0/1:3,4:7:93.70:94,0,105
8    145679080    rs2620656    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438911    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
8    145689777    .    G    C    52.51    FSFilter60;QDFilter2    AB=0.293;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.567;DP=75;Dels=0.0;FS=68.699;HRun=2;HaplotypeScore=3.5964;MQ=41.43;MQ0=0;MQRankSum=-3.982;QD=0.7;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=G104;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145689200_145689995;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306145    GT:AD:DP:GQ:PL    0/1:22,53:75:82.50:82,0,550
8    145689915    rs2721167    G    A    1356.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.36;MQ0=0;QD=37.67;SNPEFF_AMINO_ACID_CHANGE=H58;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145689200_145689995;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306145    GT:AD:DP:GQ:PL    1/1:1,35:36:99:1389,105,0
8    145690308    rs2721166    C    T    376.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.64;SNPEFF_AMINO_ACID_CHANGE=Y2;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145690295_145690484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2517M22.16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525461    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
8    145690348    rs2620644    G    A    83.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.88;SNPEFF_AMINO_ACID_CHANGE=E16K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145690295_145690484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2517M22.16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525461    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
8    145691915    rs112422823    G    C    113.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2517M22.16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525461    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
8    145692296    rs2250895    A    C    80.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2517M22.16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525461    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:113,9,0
8    145692385    rs2250891    C    T    204.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=G74;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145692342_145692493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301332    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
8    145692762    rs2291133    G    T    1039.74    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.336;DB;DP=67;Dels=0.0;FS=3.593;HRun=0;HaplotypeScore=0.9998;MQ=59.31;MQ0=0;MQRankSum=-0.408;QD=15.52;ReadPosRankSum=0.508;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2517M22.16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525461    GT:AD:DP:GQ:PL    0/1:34,33:67:99:1070,0,1076
8    145692812    rs2250779    C    T    3325.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8737;MQ=58.14;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2517M22.16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525461    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3325,262,0
8    145693720    rs2250657    A    G    284.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=A21;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145693712_145693789;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301331    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:318,27,0
8    145693900    rs182469517    G    T    31.10    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.358;QD=4.44;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2517M22.16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525461    GT:AD:DP:GQ:PL    0/1:5,2:7:61.09:61,0,107
8    145697244    rs4925823    G    A    716.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292541    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:750,54,0
8    145699601    rs2721176    T    C    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525197    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
8    145724275    rs3816732    T    C    168.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.763;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.077;QD=9.35;ReadPosRankSum=0.14;SNPEFF_AMINO_ACID_CHANGE=R40;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145724135_145724688;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CTD-2517M22.14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000532766    GT:AD:DP:GQ:PL    0/1:12,6:18:99:198,0,363
8    145729727    rs1063739    C    A    106.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.8321;MQ=57.66;MQ0=0;MQRankSum=0.633;QD=10.6;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=H14N;SNPEFF_CODON_CHANGE=Cat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145729465_145729849;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394955    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,178
8    145730330    rs2101039    G    A    777.74    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.645;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=12.96;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354769    GT:AD:DP:GQ:PL    0/1:32,28:60:99:808,0,1076
8    145737040    rs2279243    C    T    347.45    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=0.542;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6567;MQ=59.78;MQ0=0;MQRankSum=0.6;QD=8.47;ReadPosRankSum=0.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394955    GT:AD:DP:GQ:PL    0/1:27,14:41:99:377,0,717
8    145737286    rs756627    G    A    623    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.42;DB;DP=40;Dels=0.0;FS=1.208;HRun=0;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=0.636;QD=15.58;ReadPosRankSum=0.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394955    GT:AD:DP:GQ:PL    0/1:20,20:40:99:653,0,576
8    145737514    rs4244610    G    A    121.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=18;Dels=0.0;FS=2.622;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.151;QD=6.73;ReadPosRankSum=-0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394955    GT:AD:DP:GQ:PL    0/1:11,7:18:99:151,0,338
8    145737636    rs4925828    A    G    1005.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.81;MQ0=0;QD=33.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301327    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1038,81,0
8    145737816    rs4251691    C    T    328    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.585;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.077;QD=13.67;ReadPosRankSum=-0.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301327    GT:AD:DP:GQ:PL    0/1:11,13:24:99:358,0,355
8    145738767    rs11362176    CG    C    1070.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=2;HaplotypeScore=127.7927;IndelType=D;MQ=61.39;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301327    GT:AD:DP:GQ:PL    1/1:1,32:33:87.28:1113,87,0
8    145742514    rs2721190    A    G    608.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292524    GT:AD:DP:GQ:PL    1/1:0,16:17:48.16:641,48,0
8    145742716    rs2721189    C    A    76.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292524    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:109,9,0
8    145745182    rs2721172    T    C    922.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=27.12;SNPEFF_AMINO_ACID_CHANGE=L25;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145744999_145745438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292524    GT:AD:DP:GQ:PL    1/1:0,34:34:78.22:955,78,0
8    145756170    rs873884    G    A    330.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_AMINO_ACID_CHANGE=D1022;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_145756086_145756255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377307    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:363,27,0
8    145756331    rs2620648    T    C    109.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276826    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
8    145771211    rs2721161    C    G    65.41    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=7.27;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276826    GT:AD:DP:GQ:PL    0/1:5,4:9:95.40:95,0,132
8    145830757    rs4541972    A    G    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276826    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
8    145830894    rs67123647    CT    C    659.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=62.2946;IndelType=D;MQ=60.57;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276826    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:702,54,0
8    145933686    rs6599536    G    C    2631.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AF186192.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524514    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2665,196,0
8    146004111    rs7004501    T    C    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343459    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
8    146017032    rs2954657    C    T    716.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262584    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:749,60,0
8    146028061    rs2958527    A    G    220.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=31.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF517;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359971    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:253,21,0
8    146033347    rs2976653    T    C    314.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=V349A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_146032576_146034529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF517;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359971    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:347,27,0
8    146036234    rs2958511    A    G    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF517;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
8    146068594    rs1735408    T    C    879.29    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=1.216;DB;DP=75;Dels=0.0;FS=1.251;HRun=0;HaplotypeScore=0.9734;MQ=59.38;MQ0=0;MQRankSum=-1.205;QD=11.72;ReadPosRankSum=-1.654;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527218    GT:AD:DP:GQ:PL    0/1:43,32:75:99:909,0,1366
8    146068710    rs2722488    T    C    332.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325241    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
8    146115367    rs2735906    A    G    767.39    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.656;DB;DP=53;Dels=0.0;FS=2.477;HRun=1;HaplotypeScore=1.8455;MQ=59.65;MQ0=0;MQRankSum=-0.586;QD=14.48;ReadPosRankSum=0.806;SNPEFF_AMINO_ACID_CHANGE=G40;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_146115318_146115444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF250;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342660    GT:AD:DP:GQ:PL    0/1:25,28:53:99:797,0,747
8    146203412    rs2979109    A    G    299.92    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.88;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.038;QD=9.37;ReadPosRankSum=0.038;SNPEFF_AMINO_ACID_CHANGE=C167R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_8_146202578_146203910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF252;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355436    GT:AD:DP:GQ:PL    0/1:19,13:32:99:330,0,567
9    14510    .    CTGT    C    296.05    PASS    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=4.092;DP=36;FS=2.572;HRun=0;HaplotypeScore=131.1278;IndelType=D;MQ=25.68;MQ0=20;MQRankSum=0.438;QD=5.19;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXyac-YRM2039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421620    GT:AD:DP:GQ:PL    0/1:46,11:36:99:335,0,1740
9    14665    rs149305563    G    A    215.37    MQFilter40    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.924;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=39.38;MQ0=3;MQRankSum=-0.032;QD=3.85;ReadPosRankSum=0.861;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXyac-YRM2039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421620    GT:AD:DP:GQ:PL    0/1:44,12:56:99:245,0,1193
9    14690    rs62530146    C    G    578.91    MQFilter40    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=44;Dels=0.0;FS=1.756;HRun=0;HaplotypeScore=0.7887;MQ=36.42;MQ0=3;MQRankSum=-0.119;QD=13.16;ReadPosRankSum=-1.389;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXyac-YRM2039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421620    GT:AD:DP:GQ:PL    0/1:17,27:44:99:609,0,434
9    14810    rs71509922    C    G    88.38    MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=30;Dels=0.0;FS=6.421;HRun=1;HaplotypeScore=0.734;MQ=20.14;MQ0=10;MQRankSum=1.157;QD=2.95;ReadPosRankSum=2.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXyac-YRM2039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421620    GT:AD:DP:GQ:PL    0/1:23,7:30:99:118,0,217
9    14889    rs71509924    A    G    35.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=11.35;MQ0=4;QD=4.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXyac-YRM2039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421620    GT:AD:DP:GQ:PL    1/1:0,9:9:8.96:68,9,0
9    15883    rs141156662    A    G    85.81    MQFilter40    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.148;DB;DP=20;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=1.8332;MQ=32.02;MQ0=2;MQRankSum=-3.444;QD=4.29;ReadPosRankSum=-0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXyac-YRM2039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421620    GT:AD:DP:GQ:PL    0/1:9,11:20:99:116,0,273
9    17107    rs78210423    T    C    54.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.33;MQ0=5;QD=6.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXyac-YRM2039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421620    GT:AD:DP:GQ:PL    1/1:5,4:9:11.92:87,12,0
9    52415    .    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=14.5;MQ0=9;QD=2.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-143M1.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438175    GT:AD:DP:GQ:PL    1/1:0,12:12:6.02:67,6,0
9    52577    .    G    A    399.14    MQFilter40    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=2.426;DP=128;Dels=0.0;FS=24.344;HRun=1;HaplotypeScore=1.787;MQ=31.54;MQ0=8;MQRankSum=1.629;QD=3.12;ReadPosRankSum=-1.826;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-143M1.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438175    GT:AD:DP:GQ:PL    0/1:100,28:128:99:429,0,1723
9    52584    .    C    T    420.24    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.778;DP=128;Dels=0.0;FS=23.794;HRun=0;HaplotypeScore=2.5757;MQ=32.95;MQ0=1;MQRankSum=0.97;QD=3.28;ReadPosRankSum=-0.439;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-143M1.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438175    GT:AD:DP:GQ:PL    0/1:96,32:128:99:450,0,1916
9    52625    .    C    CA    388.94    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.508;DP=104;FS=2.388;HRun=15;HaplotypeScore=736.87;IndelType=I;MQ=36.25;MQ0=2;MQRankSum=0.729;QD=3.27;ReadPosRankSum=-2.111;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-143M1.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438175    GT:AD:DP:GQ:PL    0/1:74,32:104:99:428,0,316
9    116800    rs79220013    C    G    453.36    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=44;Dels=0.0;FS=1.257;HRun=0;HaplotypeScore=2.453;MQ=50.07;MQ0=2;MQRankSum=0.191;QD=10.3;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=*440Y;SNPEFF_CODON_CHANGE=taG/taC;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_9_116237_118417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000382500    GT:AD:DP:GQ:PL    0/1:26,18:44:99:483,0,641
9    116832    rs4742632    T    C    230.57    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.307;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=55.96;MQ0=0;MQRankSum=-0.019;QD=6.59;ReadPosRankSum=0.813;SNPEFF_AMINO_ACID_CHANGE=S430G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116237_118417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382500    GT:AD:DP:GQ:PL    0/1:24,11:35:99:261,0,816
9    117371    rs191216307    C    G    394.24    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=49;Dels=0.0;FS=1.402;HRun=4;HaplotypeScore=1.4105;MQ=34.36;MQ0=3;MQRankSum=-3.666;QD=8.05;ReadPosRankSum=-1.574;SNPEFF_AMINO_ACID_CHANGE=G250A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116237_118417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382500    GT:AD:DP:GQ:PL    0/1:21,28:49:99:424,0,596
9    117428    rs4742643    G    C    250.78    MQFilter40    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=63;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=11.5894;MQ=38.41;MQ0=2;MQRankSum=1.382;QD=3.98;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=P231R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116237_118417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382500    GT:AD:DP:GQ:PL    0/1:38,25:63:99:281,0,581
9    117487    .    C    T    184.89    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.907;DP=129;Dels=0.0;FS=20.756;HRun=0;HaplotypeScore=1.9265;MQ=46.83;MQ0=5;MQRankSum=-6.142;QD=1.43;ReadPosRankSum=0.696;SNPEFF_AMINO_ACID_CHANGE=L211;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116237_118417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382500    GT:AD:DP:GQ:PL    0/1:99,27:129:99:215,0,2920
9    117506    rs2492215    G    A    484.61    PASS    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DB;DP=174;Dels=0.0;FS=46.069;HRun=0;HaplotypeScore=1.8245;MQ=47.62;MQ0=7;MQRankSum=-7.652;QD=2.79;ReadPosRankSum=0.214;SNPEFF_AMINO_ACID_CHANGE=P205L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116237_118417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382500    GT:AD:DP:GQ:PL    0/1:133,41:174:99:515,0,3250
9    117696    rs9406415    G    A    614.87    MQFilter40    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=1.887;DB;DP=208;DS;Dels=0.0;FS=24.159;HRun=0;HaplotypeScore=3.9506;MQ=36.32;MQ0=18;MQRankSum=-3.226;QD=2.96;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=R142C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116237_118417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382500    GT:AD:DP:GQ:PL    0/1:150,57:208:99:645,0,3458
9    117713    rs2492216    T    C    1522    MQFilter40    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.078;DB;DP=209;Dels=0.0;FS=49.379;HRun=1;HaplotypeScore=2.7398;MQ=37.39;MQ0=20;MQRankSum=-9.146;QD=7.28;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=D136G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116237_118417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382500    GT:AD:DP:GQ:PL    0/1:93,99:209:99:1552,0,2657
9    118172    rs61681930    C    CG    1080.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=241.5817;IndelType=I;MQ=37.51;MQ0=2;QD=25.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314367    GT:AD:DP:GQ:PL    1/1:7,35:35:86.93:1122,87,0
9    135088    .    G    A    138.70    MQFilter40;QDFilter2    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=2.143;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.2;MQ0=89;MQRankSum=0.09;QD=1.12;ReadPosRankSum=0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314367    GT:AD:DP:GQ:PL    0/1:87,37:124:99:169,0,180
9    135155    rs113360309    C    A    264.43    MQFilter40    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.76;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=21.74;MQ0=0;MQRankSum=-1.124;QD=5.88;ReadPosRankSum=-0.125;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314367    GT:AD:DP:GQ:PL    0/1:23,22:45:99:294,0,433
9    135213    rs191633002    A    T    36.53    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=35.72;MQ0=0;MQRankSum=-1.203;QD=4.06;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314367    GT:AD:DP:GQ:PL    0/1:6,3:9:66.52:67,0,213
9    146032    rs116906391    C    A    80.96    MQFilter40;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=2.407;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=28.11;MQ0=2;MQRankSum=1.302;QD=1.08;ReadPosRankSum=1.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498044    GT:AD:DP:GQ:PL    0/1:66,9:75:99:111,0,996
9    146040    .    C    T    108.35    MQFilter40;QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7994;MQ=26.7;MQ0=10;MQRankSum=1.381;QD=1.22;ReadPosRankSum=0.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498044    GT:AD:DP:GQ:PL    0/1:78,11:89:99:138,0,1048
9    154795    rs2785333    T    C    3492.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.88;MQ0=14;QD=25.87;SNPEFF_AMINO_ACID_CHANGE=R156;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_154709_154795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314367    GT:AD:DP:GQ:PL    1/1:0,134:134:99:3493,301,0
9    156383    rs143995171    T    A    294.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.81;MQ0=17;QD=5.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431099    GT:AD:DP:GQ:PL    1/1:11,40:51:30.06:328,30,0
9    159973    .    C    G    201.10    MQFilter40    AC=2;AF=1.00;AN=2;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.47;MQ0=4;QD=16.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377347    GT:AD:DP:GQ:PL    1/1:0,12:12:21.06:234,21,0
9    162405    .    C    G    858.17    MQFilter40    AC=2;AF=1.00;AN=2;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.92;MQ0=0;QD=28.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314367    GT:AD:DP:GQ:PL    1/1:0,30:30:81.21:891,81,0
9    166147    .    C    G    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=9.17;MQ0=18;QD=1.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314367    GT:AD:DP:GQ:PL    1/1:0,20:20:6.02:67,6,0
9    214706    rs540473    G    C    195.58    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.271;QD=19.56;ReadPosRankSum=-1.271;SNPEFF_AMINO_ACID_CHANGE=R231G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_213108_215893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382387    GT:AD:DP:GQ:PL    0/1:2,8:10:42.17:226,0,42
9    215057    rs481905    T    C    36.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.22;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=N114D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_213108_215893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382387    GT:AD:DP:GQ:PL    0/1:1,3:4:23.26:67,0,23
9    215269    rs636922    A    C    148.16    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=14.82;ReadPosRankSum=-0.546;SNPEFF_AMINO_ACID_CHANGE=L43R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_213108_215893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382387    GT:AD:DP:GQ:PL    0/1:3,7:10:99:178,0,99
9    215534    rs635615    C    T    182.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=20.24;ReadPosRankSum=-0.573;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_213108_215893;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf66;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382387    GT:AD:DP:GQ:PL    0/1:3,6:9:97.32:212,0,97
9    271455    rs682251    T    C    83.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.8;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:113,0,31
9    271638    rs506121    C    T    719.27    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=1.195;DB;DP=67;Dels=0.0;FS=9.052;HRun=0;HaplotypeScore=3.384;MQ=59.66;MQ0=0;MQRankSum=0.198;QD=10.74;ReadPosRankSum=0.16;SNPEFF_AMINO_ACID_CHANGE=A22V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_271627_271729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:40,27:67:99:749,0,1148
9    286593    rs529208    C    A    178.58    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.395;QD=9.4;ReadPosRankSum=-0.042;SNPEFF_AMINO_ACID_CHANGE=P29T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_286461_286636;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432829    GT:AD:DP:GQ:PL    0/1:12,7:19:99:209,0,439
9    286824    rs62533373    G    A    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    289481    rs34722895    C    CAT    653.76    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.317;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=64.6639;IndelType=I;MQ=60.13;MQ0=0;MQRankSum=1.448;QD=27.24;ReadPosRankSum=-1.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469197    GT:AD:DP:GQ:PL    0/1:11,12:24:99:693,0,466
9    304428    rs2296820    A    T    226.32    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.646;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=12.57;ReadPosRankSum=-1.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:8,9:17:99:256,0,270
9    325811    rs3831138    T    TC    991.85    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=4.641;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=199.4516;IndelType=I;MQ=61.34;MQ0=0;MQRankSum=0.403;QD=17.71;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:30,26:56:99:1031,0,1081
9    325817    rs2360277    T    C    570.25    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.403;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.46;MQ0=0;MQRankSum=0.631;QD=12.13;ReadPosRankSum=-0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:26,21:47:99:600,0,926
9    327938    rs2296825    G    C    364.72    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.07;QD=16.58;ReadPosRankSum=-0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:9,13:22:99:395,0,317
9    327957    rs2296826    T    G    400.41    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=30;Dels=0.0;FS=2.965;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.117;QD=13.35;ReadPosRankSum=-1.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:11,19:30:99:430,0,374
9    328006    rs2296828    T    C    507.56    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=45;Dels=0.0;FS=1.254;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=11.28;ReadPosRankSum=2.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:23,21:45:99:538,0,732
9    368128    rs17673268    C    T    1369.44    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=121;Dels=0.0;FS=12.288;HRun=0;HaplotypeScore=1.9326;MQ=59.81;MQ0=0;MQRankSum=-0.897;QD=11.32;ReadPosRankSum=0.587;SNPEFF_AMINO_ACID_CHANGE=A529V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_368018_368135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432829    GT:AD:DP:GQ:PL    0/1:73,48:121:99:1399,0,2172
9    376929    rs7020921    A    G    291.11    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7287;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=16.17;ReadPosRankSum=0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:7,11:18:99:321,0,217
9    379965    rs10758420    T    C    327.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:361,33,0
9    382294    rs10973262    T    C    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483757    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,104
9    382372    rs913702    A    G    456.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483757    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:490,42,0
9    382390    rs748429    T    C    272.43    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=14.34;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483757    GT:AD:DP:GQ:PL    0/1:10,9:19:99:302,0,358
9    390512    rs2297075    C    T    839.06    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=4.496;DB;DP=51;Dels=0.0;FS=1.113;HRun=0;HaplotypeScore=0.9159;MQ=59.55;MQ0=0;MQRankSum=-0.214;QD=16.45;ReadPosRankSum=0.37;SNPEFF_AMINO_ACID_CHANGE=T274;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_390471_390566;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382331    GT:AD:DP:GQ:PL    0/1:24,27:51:99:869,0,704
9    390636    rs10814649    A    G    328.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.306;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.84;MQ0=0;MQRankSum=-1.172;QD=16.44;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:10,10:20:99:359,0,343
9    396712    rs2297076    T    A    541.19    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.751;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9467;MQ=60.0;MQ0=0;MQRankSum=-0.52;QD=13.2;ReadPosRankSum=0.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:23,17:41:99:571,0,764
9    396749    rs2297077    T    G    387.46    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.524;DB;DP=75;Dels=0.0;FS=1.068;HRun=0;HaplotypeScore=0.8667;MQ=59.69;MQ0=0;MQRankSum=-0.856;QD=5.17;ReadPosRankSum=-0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:38,37:75:99:417,0,1221
9    396750    rs2297078    C    A    404.38    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.151;DB;DP=76;Dels=0.0;FS=2.432;HRun=0;HaplotypeScore=0.8667;MQ=59.7;MQ0=0;MQRankSum=0.087;QD=5.32;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:39,37:76:99:434,0,1268
9    397050    rs3818619    A    T    231.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:264,21,0
9    414824    rs13285348    C    T    2560.81    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=187;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9427;MQ=59.5;MQ0=0;MQRankSum=-0.468;QD=13.69;ReadPosRankSum=-1.58;SNPEFF_AMINO_ACID_CHANGE=S1091;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_414782_414951;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000469391    GT:AD:DP:GQ:PL    0/1:98,88:187:99:2591,0,3081
9    421032    rs2297079    C    G    995.06    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.364;DB;DP=68;Dels=0.0;FS=3.974;HRun=0;HaplotypeScore=0.734;MQ=59.32;MQ0=0;MQRankSum=0.456;QD=14.63;ReadPosRankSum=-1.404;SNPEFF_AMINO_ACID_CHANGE=L1269;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_420949_421078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000469391    GT:AD:DP:GQ:PL    0/1:37,31:68:99:1025,0,1086
9    421980    rs2297081    T    A    185.72    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=16.88;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:5,6:11:99:216,0,157
9    422157    rs10217719    T    C    46.08    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.106;QD=4.19;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:8,3:11:76.07:76,0,294
9    429719    rs7854035    T    C    1944.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_AMINO_ACID_CHANGE=F1397;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_429702_429854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000469391    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1978,150,0
9    432081    rs1329377    T    C    208.61    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.101;QD=16.05;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:6,7:13:99:239,0,198
9    432140    rs112516048    CTT    C    272.08    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.525;DB;DP=28;FS=0.0;HRun=14;HaplotypeScore=172.1717;IndelType=D;MQ=58.29;MQ0=0;MQRankSum=0.361;QD=9.72;ReadPosRankSum=0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:10,13:28:99:311,0,238
9    432330    rs7036567    C    G    850.44    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=69;Dels=0.0;FS=3.384;HRun=0;HaplotypeScore=0.734;MQ=59.33;MQ0=0;MQRankSum=0.702;QD=12.33;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:38,31:69:99:880,0,1126
9    432503    rs7046598    T    C    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=5.33;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,132
9    433978    rs2360712    A    G    153.96    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.715;DB;DP=24;Dels=0.0;FS=5.653;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.42;ReadPosRankSum=1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:17,7:24:99:184,0,562
9    439102    rs10733508    G    C    95.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=10.61;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:5,4:9:99:125,0,138
9    439453    rs10758598    G    C    106.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=11.79;ReadPosRankSum=1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,176
9    439467    rs10217568    A    C    102.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.26;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,184
9    441827    rs10974467    C    T    527.40    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=47;Dels=0.0;FS=14.696;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=11.22;ReadPosRankSum=1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:28,19:47:99:557,0,920
9    441952    rs1887957    G    A    958.89    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.326;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.538;QD=16.25;ReadPosRankSum=0.053;SNPEFF_AMINO_ACID_CHANGE=E1278;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_441875_442009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382329    GT:AD:DP:GQ:PL    0/1:29,30:59:99:989,0,966
9    446352    rs10814952    G    C    516.71    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=4.698;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.01;QD=10.13;ReadPosRankSum=0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:31,20:51:99:547,0,897
9    449551    rs2031945    A    C    41.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DOCK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287364    GT:AD:DP:GQ:PL    0/1:2,2:4:71.48:72,0,71
9    676820    rs1570474    A    G    228.84    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=20.8;ReadPosRankSum=1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354485    GT:AD:DP:GQ:PL    0/1:3,8:11:85.17:259,0,85
9    676837    rs3831027    T    TG    497.14    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DB;DP=24;FS=0.0;HRun=1;HaplotypeScore=78.1485;IndelType=I;MQ=59.49;MQ0=0;MQRankSum=0.0;QD=20.71;ReadPosRankSum=1.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354485    GT:AD:DP:GQ:PL    0/1:11,13:24:99:536,0,381
9    712060    rs4465020    G    C    428.60    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.995;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.289;QD=11.58;ReadPosRankSum=-0.802;SNPEFF_AMINO_ACID_CHANGE=E274Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_710804_713464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382293    GT:AD:DP:GQ:PL    0/1:22,15:37:99:459,0,766
9    712137    rs912175    G    C    724.12    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=0.781;DB;DP=37;Dels=0.0;FS=1.498;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.313;QD=19.57;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=L299;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_710804_713464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382293    GT:AD:DP:GQ:PL    0/1:11,26:37:99:754,0,355
9    712156    rs912174    T    G    718.81    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=2.668;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.38;MQ0=0;MQRankSum=0.419;QD=19.43;ReadPosRankSum=1.728;SNPEFF_AMINO_ACID_CHANGE=S306A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_710804_713464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382293    GT:AD:DP:GQ:PL    0/1:12,25:37:99:749,0,381
9    712599    rs11789987    C    T    539.23    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=3.55;DB;DP=45;Dels=0.0;FS=4.85;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.816;QD=11.98;ReadPosRankSum=-0.448;SNPEFF_AMINO_ACID_CHANGE=N453;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_710804_713464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382293    GT:AD:DP:GQ:PL    0/1:26,19:45:99:569,0,670
9    729972    rs10125507    G    A    552.96    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=48;Dels=0.0;FS=9.523;HRun=1;HaplotypeScore=0.9947;MQ=59.52;MQ0=0;MQRankSum=1.704;QD=11.52;ReadPosRankSum=-1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354485    GT:AD:DP:GQ:PL    0/1:27,21:48:99:583,0,790
9    730266    rs113240136    C    T    363.08    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.151;DB;DP=32;Dels=0.0;FS=3.698;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=11.35;ReadPosRankSum=-1.727;SNPEFF_AMINO_ACID_CHANGE=Q972*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_9_730051_734129;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000354485    GT:AD:DP:GQ:PL    0/1:19,13:32:99:393,0,499
9    732216    rs10815561    C    T    40.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.11;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382293    GT:AD:DP:GQ:PL    0/1:2,2:4:54.42:70,0,54
9    732302    rs10815562    T    C    384.85    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=22;Dels=0.0;FS=7.659;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=17.49;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382293    GT:AD:DP:GQ:PL    0/1:10,12:22:99:415,0,268
9    732536    rs34832656    T    C    1346.27    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.549;DB;DP=107;Dels=0.0;FS=0.741;HRun=0;HaplotypeScore=0.9159;MQ=59.79;MQ0=0;MQRankSum=1.27;QD=12.47;ReadPosRankSum=1.335;SNPEFF_AMINO_ACID_CHANGE=I1055T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_732378_732617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382297    GT:AD:DP:GQ:PL    0/1:62,45:107:99:1376,0,1813
9    732779    rs10815563    A    G    67.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.53;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382289    GT:AD:DP:GQ:PL    0/1:6,3:9:97.80:98,0,201
9    734679    rs10429625    G    T    325.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354485    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:359,27,0
9    734854    rs28513939    C    G    529.47    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=4.517;DB;DP=38;Dels=0.0;FS=3.584;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.833;QD=13.93;ReadPosRankSum=0.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354485    GT:AD:DP:GQ:PL    0/1:20,18:38:99:559,0,606
9    738238    rs2296052    G    A    342.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354485    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:375,30,0
9    740769    rs58169581    CTTTTTT    C    256.13    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.609;DB;DP=43;FS=6.915;HRun=18;HaplotypeScore=419.9429;IndelType=D;MQ=44.04;MQ0=0;MQRankSum=-2.675;QD=5.96;ReadPosRankSum=3.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382286    GT:AD:DP:GQ:PL    0/1:27,11:43:99:295,0,2195
9    740901    rs2296049    C    T    669.39    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=2.681;DB;DP=40;Dels=0.0;FS=1.534;HRun=2;HaplotypeScore=0.0;MQ=49.54;MQ0=0;MQRankSum=0.711;QD=16.73;ReadPosRankSum=-1.477;SNPEFF_AMINO_ACID_CHANGE=F1063;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_740792_740934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382293    GT:AD:DP:GQ:PL    0/1:17,23:40:99:699,0,474
9    740972    rs7032867    G    C    50.35    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=11;Dels=0.0;FS=5.643;HRun=3;HaplotypeScore=0.0;MQ=53.81;MQ0=0;MQRankSum=0.382;QD=4.58;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382286    GT:AD:DP:GQ:PL    0/1:8,3:11:80.34:80,0,293
9    741041    rs7027169    T    G    67.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.727;QD=16.92;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382286    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:98,0,30
9    742342    rs10733535    A    G    1802.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7791;MQ=58.63;MQ0=0;QD=35.35;SNPEFF_AMINO_ACID_CHANGE=G1120;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_742205_742405;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382293    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1836,141,0
9    745413    rs3739586    A    G    203.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489369    GT:AD:DP:GQ:PL    1/1:0,8:8:21.03:237,21,0
9    841825    rs3739584    C    T    253.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=18;Dels=0.0;FS=5.614;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.999;QD=14.11;ReadPosRankSum=-0.489;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_841690_842192;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382276    GT:AD:DP:GQ:PL    0/1:8,10:18:99:284,0,212
9    841971    rs3739583    T    A    159.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.133;QD=15.99;ReadPosRankSum=1.036;SNPEFF_AMINO_ACID_CHANGE=S45T;SNPEFF_CODON_CHANGE=Tcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_841690_842192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382276    GT:AD:DP:GQ:PL    0/1:4,6:10:99:190,0,123
9    847208    rs2273929    A    G    256.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=18.32;ReadPosRankSum=-1.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451501    GT:AD:DP:GQ:PL    0/1:4,10:14:99:286,0,124
9    847265    rs2273930    G    A    86.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=10.79;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451501    GT:AD:DP:GQ:PL    0/1:4,4:8:99:116,0,140
9    847292    rs1407808    G    T    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451501    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
9    967981    rs279895    G    C    508.67    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.719;DB;DP=47;Dels=0.0;FS=12.149;HRun=1;HaplotypeScore=0.6651;MQ=59.51;MQ0=0;MQRankSum=1.217;QD=10.82;ReadPosRankSum=0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382276    GT:AD:DP:GQ:PL    0/1:26,21:47:99:539,0,738
9    977312    rs148355218    T    C    38.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=0.0;QD=4.79;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=V104A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_976964_977455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000190165    GT:AD:DP:GQ:PL    0/1:4,4:8:68.28:68,0,95
9    977556    rs279891    C    A    82.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190165    GT:AD:DP:GQ:PL    0/1:1,3:4:23.21:113,0,23
9    989868    rs75785779    G    C    81    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=20.25;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190165    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:111,0,28
9    989943    rs6477419    T    C    365.28    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=1.528;QD=21.49;ReadPosRankSum=-0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190165    GT:AD:DP:GQ:PL    0/1:5,12:17:99:395,0,156
9    1053910    rs2275516    G    T    283.48    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.188;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=58.84;MQ0=0;MQRankSum=0.372;QD=14.17;ReadPosRankSum=-0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259622    GT:AD:DP:GQ:PL    0/1:9,11:20:99:313,0,278
9    1056101    rs7854435    T    G    182.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.391;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=8.69;ReadPosRankSum=0.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412350    GT:AD:DP:GQ:PL    0/1:12,9:21:99:212,0,439
9    1056728    rs3824419    G    C    832.96    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=57;Dels=0.0;FS=3.657;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.934;QD=14.61;ReadPosRankSum=1.046;SNPEFF_AMINO_ACID_CHANGE=A381P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_1056216_1057550;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302441    GT:AD:DP:GQ:PL    0/1:29,28:57:99:863,0,943
9    1057318    rs9140    A    G    1097.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=36.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412350    GT:AD:DP:GQ:PL    1/1:0,30:30:84.26:1131,84,0
9    2073162    rs3737268    G    C    400.34    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=33;Dels=0.0;FS=3.11;HRun=0;HaplotypeScore=0.9332;MQ=58.73;MQ0=0;MQRankSum=0.741;QD=12.13;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349721    GT:AD:DP:GQ:PL    0/1:18,15:33:99:430,0,636
9    2073292    rs13288443    A    G    417.31    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.38;QD=11.28;ReadPosRankSum=0.77;SNPEFF_AMINO_ACID_CHANGE=P609;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_2073212_2073342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349721    GT:AD:DP:GQ:PL    0/1:21,16:37:99:447,0,686
9    2073514    rs7864080    A    T    174.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=15;Dels=0.0;FS=2.522;HRun=2;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=1.792;QD=11.65;ReadPosRankSum=-0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349721    GT:AD:DP:GQ:PL    0/1:7,7:15:99:205,0,164
9    2101434    rs10757158    G    A    97.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.55;QD=13.93;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349721    GT:AD:DP:GQ:PL    0/1:3,4:7:91.93:127,0,92
9    2170512    rs3793511    G    C    1534.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302401    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1567,114,0
9    2182062    rs2281786    A    G    2062.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.01;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=58.96;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302401    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2096,180,0
9    2644002    rs10967320    C    T    232.09    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.713;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=0.589;QD=9.67;ReadPosRankSum=1.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382096    GT:AD:DP:GQ:PL    0/1:13,11:24:99:262,0,406
9    2644543    rs2889261    G    A    86.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382096    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
9    2644954    rs11789583    C    T    827.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.439;DB;DP=70;Dels=0.0;FS=4.978;HRun=0;HaplotypeScore=1.8321;MQ=59.67;MQ0=0;MQRankSum=0.067;QD=11.82;ReadPosRankSum=-1.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382096    GT:AD:DP:GQ:PL    0/1:40,30:70:99:858,0,1269
9    2645109    rs11793899    G    A    591.38    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.122;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.61;MQ0=0;MQRankSum=-1.012;QD=10.02;ReadPosRankSum=-0.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382096    GT:AD:DP:GQ:PL    0/1:32,27:59:99:621,0,1030
9    2645557    rs6144    A    T    881.24    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=0.2;QD=10.88;ReadPosRankSum=0.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382096    GT:AD:DP:GQ:PL    0/1:51,30:81:99:911,0,1718
9    2645773    rs35847091    T    G    647.76    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=68;Dels=0.0;FS=13.373;HRun=0;HaplotypeScore=0.9916;MQ=59.66;MQ0=0;MQRankSum=2.393;QD=9.53;ReadPosRankSum=0.494;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382096    GT:AD:DP:GQ:PL    0/1:44,24:68:99:678,0,1535
9    2647760    rs6475888    A    G    59.70    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=7.46;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382096    GT:AD:DP:GQ:PL    0/1:5,3:8:89.69:90,0,170
9    2648177    rs73640153    G    T    127.04    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.375;DB;DP=31;Dels=0.0;FS=25.233;HRun=2;HaplotypeScore=0.8321;MQ=46.65;MQ0=0;MQRankSum=-2.26;QD=4.1;ReadPosRankSum=0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382096    GT:AD:DP:GQ:PL    0/1:14,17:31:99:157,0,330
9    2648773    rs6148    A    G    842.81    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.24;DB;DP=65;Dels=0.0;FS=6.119;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=12.97;ReadPosRankSum=1.834;SNPEFF_AMINO_ACID_CHANGE=Q568;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_2648669_2648810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382092    GT:AD:DP:GQ:PL    0/1:34,31:65:99:873,0,1092
9    2650264    rs35730767    T    G    384.80    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.424;QD=24.05;ReadPosRankSum=0.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478776    GT:AD:DP:GQ:PL    0/1:4,12:16:99:415,0,114
9    2651340    rs35769682    A    G    240.27    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-2.007;QD=15.02;ReadPosRankSum=-0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478776    GT:AD:DP:GQ:PL    0/1:6,10:16:99:270,0,202
9    2651962    rs6145    G    T    451.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.8;DB;DP=27;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.581;QD=16.72;ReadPosRankSum=-0.915;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VLDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478776    GT:AD:DP:GQ:PL    0/1:12,15:27:99:481,0,354
9    2717676    rs11793555    T    G    170.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=14;Dels=0.0;FS=6.803;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.839;QD=12.21;ReadPosRankSum=0.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0020;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490444    GT:AD:DP:GQ:PL    0/1:8,6:14:99:201,0,276
9    2717698    rs7029012    C    G    168.04    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.774;DB;DP=21;Dels=0.0;FS=7.605;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.326;QD=8.0;ReadPosRankSum=0.905;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0020;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490444    GT:AD:DP:GQ:PL    0/1:13,8:21:99:198,0,459
9    2717922    rs10967705    C    G    557.24    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.73;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=12.38;ReadPosRankSum=-0.501;SNPEFF_AMINO_ACID_CHANGE=G61;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_2717502_2719095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382082    GT:AD:DP:GQ:PL    0/1:21,24:45:99:587,0,536
9    2810326    rs72694643    T    A    307.26    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.013;QD=9.31;ReadPosRankSum=-0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0020;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397885    GT:AD:DP:GQ:PL    0/1:20,13:33:99:337,0,624
9    2811505    rs2270888    G    A    1707.99    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=2.868;DB;DP=115;Dels=0.0;FS=0.745;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.524;QD=14.85;ReadPosRankSum=0.799;SNPEFF_AMINO_ACID_CHANGE=H497;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_2811361_2811583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0020;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397885    GT:AD:DP:GQ:PL    0/1:58,57:115:99:1738,0,1665
9    2828765    rs2173904    C    G    1142.50    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=3.172;DB;DP=73;Dels=0.0;FS=4.782;HRun=2;HaplotypeScore=2.6562;MQ=59.68;MQ0=0;MQRankSum=0.838;QD=15.65;ReadPosRankSum=1.705;SNPEFF_AMINO_ACID_CHANGE=R289P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_2828675_2828778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0020;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397885    GT:AD:DP:GQ:PL    0/1:34,39:73:99:1172,0,849
9    2831149    rs2292000    A    C    404.97    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.088;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.966;QD=16.87;ReadPosRankSum=1.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0020;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397885    GT:AD:DP:GQ:PL    0/1:10,14:24:99:435,0,334
9    2833267    rs10217194    T    C    69.81    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=57.63;MQ0=0;MQRankSum=0.322;QD=8.73;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0020;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397885    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,181
9    2916741    rs10117905    C    T    528.31    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.925;DB;DP=41;Dels=0.0;FS=4.945;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=12.89;ReadPosRankSum=1.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CARM1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497195    GT:AD:DP:GQ:PL    0/1:21,20:41:99:558,0,695
9    2992572    rs113615381    C    CA    150.47    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DB;DP=27;FS=0.0;HRun=16;HaplotypeScore=206.4939;IndelType=I;MQ=44.01;MQ0=0;MQRankSum=-0.588;QD=5.57;ReadPosRankSum=-0.065;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CARM1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426329    GT:AD:DP:GQ:PL    0/1:17,10:27:1.34:188,0,1
9    3013123    rs6476180    G    A    919.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CARM1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426329    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:952,72,0
9    3013162    rs7862897    G    C    405.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CARM1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426329    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:439,33,0
9    3014254    rs4543592    T    C    335.23    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.665;DB;DP=37;Dels=0.0;FS=1.38;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.696;QD=9.06;ReadPosRankSum=-0.325;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CARM1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426329    GT:AD:DP:GQ:PL    0/1:22,15:37:99:365,0,691
9    3053562    rs7853519    G    A    34.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.38;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CARM1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426329    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:64,0,33
9    3228700    rs643429    A    C    154.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=19.31;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381992    GT:AD:DP:GQ:PL    0/1:3,5:8:60.51:184,0,61
9    3229105    rs501805    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381992    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
9    3247690    rs675234    C    T    1135.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381986    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1168,87,0
9    3262803    rs635647    T    C    102.48    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.262;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.262;QD=5.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:15,5:20:99:132,0,566
9    3263224    rs633893    T    C    145.91    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=18.24;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:3,5:8:99:176,0,100
9    3270190    rs640168    G    T    283.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
9    3270683    rs579577    C    T    313.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:346,27,0
9    3270858    rs41312820    G    C    255.79    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.448;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.652;QD=15.99;ReadPosRankSum=1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:7,8:16:99:286,0,238
9    3277584    rs2304928    G    A    170.86    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=13.14;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:7,6:13:99:201,0,249
9    3301708    rs2986686    C    T    70.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.7;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:3,3:6:98.25:100,0,98
9    3301731    rs7044448    T    C    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,70
9    3301744    rs7025328    C    T    40.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.6;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:71,0,28
9    3324206    rs2274487    C    T    385.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.586;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.561;QD=14.28;ReadPosRankSum=0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:15,12:27:99:416,0,483
9    3344954    rs3012670    C    A    106.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.421;QD=13.29;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,116
9    3469357    rs1970534    C    T    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302303    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
9    3829212    rs7029652    T    C    125.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=12.53;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    0/1:5,5:10:99:155,0,168
9    3829631    rs2181578    C    T    312.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:345,27,0
9    3879693    rs4740742    C    T    165.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
9    3879791    rs4741863    G    A    37.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
9    3898509    rs10758532    A    T    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
9    3898742    .    C    T    592.89    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.404;DP=36;Dels=0.0;FS=7.479;HRun=0;HaplotypeScore=3.506;MQ=60.0;MQ0=0;MQRankSum=-0.812;QD=16.47;ReadPosRankSum=1.385;SNPEFF_AMINO_ACID_CHANGE=A538T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_3898691_3898835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    0/1:16,20:36:99:623,0,522
9    3898987    rs10122183    A    G    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
9    3932283    rs535978    C    G    760.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464391    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:793,63,0
9    3932521    rs587571    T    C    1142    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469833    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1175,87,0
9    4117602    rs537484    C    T    75.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.1;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462164    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:106,0,68
9    4118111    rs6415788    G    T    150.91    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=12.58;ReadPosRankSum=-0.689;SNPEFF_AMINO_ACID_CHANGE=P301Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_4117768_4118881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    0/1:5,7:12:99:181,0,169
9    4118208    rs806052    A    G    345.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_AMINO_ACID_CHANGE=S269P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_4117768_4118881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324333    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:378,27,0
9    4125633    rs71497518    AGTGT    A    356.73    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=156.3524;IndelType=D;MQ=47.07;MQ0=0;MQRankSum=2.18;QD=20.98;ReadPosRankSum=-0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498258    GT:AD:DP:GQ:PL    0/1:3,9:17:99:396,0,222
9    4285986    rs10758591    G    C    493.65    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=33;Dels=0.0;FS=7.302;HRun=0;HaplotypeScore=0.9983;MQ=58.59;MQ0=0;MQRankSum=0.054;QD=14.96;ReadPosRankSum=-1.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381971    GT:AD:DP:GQ:PL    0/1:15,18:33:99:524,0,506
9    4378305    rs10758614    T    A    103.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL162419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408803    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,140
9    4378314    rs12001643    A    G    129.59    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=11.78;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL162419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408803    GT:AD:DP:GQ:PL    0/1:6,5:11:99:160,0,209
9    4378371    rs10758615    G    A    378.05    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.585;DB;DP=23;Dels=0.0;FS=6.628;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.277;QD=16.44;ReadPosRankSum=0.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL162419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408803    GT:AD:DP:GQ:PL    0/1:11,12:23:99:408,0,351
9    4378591    rs7865666    G    C    144.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=14.44;ReadPosRankSum=0.47;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL162419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408803    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,181
9    4490880    rs12002726    T    C    83.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
9    4544721    rs45518336    A    T    538.97    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.768;DB;DP=40;Dels=0.0;FS=2.183;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.042;QD=13.47;ReadPosRankSum=0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    0/1:21,19:40:99:569,0,677
9    4561374    rs10974624    C    T    682.12    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=44;Dels=0.0;FS=3.103;HRun=0;HaplotypeScore=1.8606;MQ=58.95;MQ0=0;MQRankSum=-0.963;QD=15.5;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    0/1:23,21:44:99:712,0,786
9    4561596    rs10974625    G    A    1047.84    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.508;DB;DP=68;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.5;QD=15.41;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    0/1:32,36:68:99:1078,0,1119
9    4561651    rs1805311    G    A    415.30    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=18.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    0/1:9,13:22:99:445,0,302
9    4564432    rs2228622    G    A    639.01    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=47;Dels=0.0;FS=1.145;HRun=0;HaplotypeScore=4.7835;MQ=59.01;MQ0=0;MQRankSum=-0.132;QD=13.6;ReadPosRankSum=1.142;SNPEFF_AMINO_ACID_CHANGE=T138;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_4564344_4564458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    0/1:23,24:47:99:669,0,689
9    4566210    rs7022772    A    C    658.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490167    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:691,54,0
9    4572480    rs3780412    T    C    281.66    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.674;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.619;QD=14.08;ReadPosRankSum=-1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    0/1:9,11:20:99:312,0,276
9    4576680    rs301430    T    C    1498.51    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.468;DB;DP=119;Dels=0.0;FS=1.45;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.865;QD=12.59;ReadPosRankSum=-0.547;SNPEFF_AMINO_ACID_CHANGE=T370;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_4576569_4576763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    0/1:62,57:119:99:1529,0,2018
9    4576851    rs301979    G    C    1151.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1184,90,0
9    4582843    rs301435    T    C    106.12    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.729;QD=11.79;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262352    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,172
9    4646363    rs301469    C    T    258.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381890    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
9    4655915    rs7869353    G    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381890    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    4661853    rs301489    C    T    60.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.55;QD=8.65;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497383    GT:AD:DP:GQ:PL    0/1:4,3:7:90.57:91,0,113
9    4662369    rs301487    A    C    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497383    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
9    4662394    rs34250374    A    G    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_AMINO_ACID_CHANGE=S7G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_4662298_4665256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381883    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    4666069    rs60279350    A    ATCTT    444.08    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=55.1764;IndelType=I;MQ=49.5;MQ0=0;MQRankSum=-1.532;QD=37.01;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381883    GT:AD:DP:GQ:PL    0/1:6,6:12:99:483,0,282
9    4679906    rs2295964    A    G    339.92    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.724;DB;DP=29;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=11.72;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381854    GT:AD:DP:GQ:PL    0/1:14,15:29:99:370,0,433
9    4680014    rs2295965    A    G    36.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381854    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:66,0,70
9    4684770    rs10739067    A    G    69.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.66;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381854    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,138
9    4696897    rs2295969    C    G    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381854    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:67,0,72
9    4696919    rs2295970    C    T    154.87    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=22.12;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381854    GT:AD:DP:GQ:PL    0/1:2,5:7:63.81:185,0,64
9    4698084    rs3900727    A    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381854    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
9    4701841    rs150796952    GT    G    246.88    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.716;DB;DP=38;FS=3.282;HRun=11;HaplotypeScore=136.4212;IndelType=D;MQ=58.74;MQ0=0;MQRankSum=0.716;QD=6.5;ReadPosRankSum=0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381854    GT:AD:DP:GQ:PL    0/1:22,16:38:99:286,0,507
9    4702156    rs3736839    T    G    1246.40    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.339;DB;DP=82;Dels=0.0;FS=1.867;HRun=1;HaplotypeScore=1.6006;MQ=58.87;MQ0=0;MQRankSum=0.063;QD=15.2;ReadPosRankSum=1.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC37L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381854    GT:AD:DP:GQ:PL    0/1:36,46:82:99:1276,0,978
9    4706214    rs2181341    C    T    90.96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.11;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381809    GT:AD:DP:GQ:PL    0/1:5,4:9:99:121,0,161
9    4706366    rs3174298    T    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381809    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    4722318    rs2274820    C    A    74.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=12.49;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359883    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,104
9    4722462    rs2274821    C    A    475.65    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=30;Dels=0.0;FS=6.904;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.393;QD=15.86;ReadPosRankSum=0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359883    GT:AD:DP:GQ:PL    0/1:14,16:30:99:506,0,422
9    4722685    rs10758645    C    G    1156.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359883    GT:AD:DP:GQ:PL    1/1:0,35:35:93.26:1189,93,0
9    4793254    rs841990    G    A    72.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.42;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381732    GT:AD:DP:GQ:PL    0/1:2,3:5:64.51:102,0,65
9    4823425    rs16922127    G    T    175.43    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=25.06;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381732    GT:AD:DP:GQ:PL    0/1:1,6:7:17.53:205,0,18
9    4832911    rs413602    T    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381750    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    4832941    rs466172    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381750    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    4834034    rs466547    A    G    136.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381750    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
9    4834299    rs2296769    T    G    498.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381750    GT:AD:DP:GQ:PL    1/1:0,23:23:42.13:531,42,0
9    4834394    rs457287    A    G    365.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381750    GT:AD:DP:GQ:PL    1/1:0,10:11:30.09:399,30,0
9    4844459    rs159432    G    A    1051.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.23;MQ0=0;QD=35.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473230    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1084,81,0
9    4844507    rs295259    G    T    1776.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473230    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1810,138,0
9    4850141    rs12375841    T    C    209.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441844    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
9    4850421    rs455864    C    G    975.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441844    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1009,75,0
9    4860300    rs15583    A    G    670.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381728    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:703,54,0
9    4945971    rs10758668    G    T    670.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.47;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-125K10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397777    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:703,57,0
9    5055015    rs1536799    C    T    130.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472549    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
9    5069837    rs7869668    G    A    66.29    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.47;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381652    GT:AD:DP:GQ:PL    0/1:4,3:7:96.28:96,0,120
9    5081780    rs2230724    G    A    485.74    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.12;DB;DP=38;Dels=0.0;FS=2.87;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.856;QD=12.78;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=L681;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_5081725_5081861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544510    GT:AD:DP:GQ:PL    0/1:20,18:38:99:516,0,622
9    5090641    rs10974955    G    A    852.53    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=63;Dels=0.0;FS=0.972;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.089;QD=13.53;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381652    GT:AD:DP:GQ:PL    0/1:32,31:63:99:883,0,1131
9    5113452    rs9987451    C    T    66.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.7656;MQ=48.09;MQ0=0;MQRankSum=0.937;QD=4.41;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381652    GT:AD:DP:GQ:PL    0/1:9,6:15:65.65:96,0,66
9    5122932    rs10815163    A    G    529.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=30;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.445;QD=17.67;ReadPosRankSum=2.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=JAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381652    GT:AD:DP:GQ:PL    0/1:12,18:30:99:560,0,320
9    5335470    rs2273782    C    T    1119.07    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.013;DB;DP=84;Dels=0.0;FS=1.857;HRun=1;HaplotypeScore=0.8321;MQ=59.78;MQ0=0;MQRankSum=0.49;QD=13.32;ReadPosRankSum=0.301;SNPEFF_AMINO_ACID_CHANGE=Q113;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_5334969_5335597;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223862    GT:AD:DP:GQ:PL    0/1:46,38:84:99:1149,0,1406
9    5335639    rs2146074    C    T    214.79    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.215;QD=14.32;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223858    GT:AD:DP:GQ:PL    0/1:8,7:15:99:245,0,251
9    5362028    rs2236320    C    A    75.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.8;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223864    GT:AD:DP:GQ:PL    0/1:3,4:7:99:106,0,104
9    5463243    rs7041009    G    A    59.20    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.382;QD=5.38;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474218    GT:AD:DP:GQ:PL    0/1:8,3:11:89.20:89,0,296
9    5466627    .    A    T    115.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.24;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474218    GT:AD:DP:GQ:PL    0/1:2,4:6:66.71:145,0,67
9    5467955    rs2297136    G    A    434.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474218    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:467,36,0
9    5510631    rs36088486    A    G    475.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=29.73;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_5510545_5510803;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1LG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397745    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:509,45,0
9    5510837    rs113352172    T    TG    1743.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.038;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=254.6662;IndelType=I;MQ=59.49;MQ0=0;MQRankSum=-1.193;QD=38.74;ReadPosRankSum=1.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1LG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397745    GT:AD:DP:GQ:PL    1/1:5,40:45:99:1785,130,0
9    5549099    rs16923208    G    A    128.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1LG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397745    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
9    5557672    rs7854303    T    C    3424.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=F139S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_5557618_5557752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1LG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397745    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3425,265,0
9    5557708    rs7854413    T    C    1483.56    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=3.268;DB;DP=88;Dels=0.0;FS=7.706;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.775;QD=16.86;ReadPosRankSum=0.593;SNPEFF_AMINO_ACID_CHANGE=I151T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_5557618_5557752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1LG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397745    GT:AD:DP:GQ:PL    0/1:40,46:88:99:1514,0,1221
9    5569860    rs7852996    T    A    482.06    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.148;DB;DP=53;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.266;QD=9.1;ReadPosRankSum=-0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1LG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397745    GT:AD:DP:GQ:PL    0/1:29,24:53:99:512,0,1010
9    5575572    rs12684209    A    T    163.60    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=9.62;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD1LG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397745    GT:AD:DP:GQ:PL    0/1:10,7:17:99:194,0,362
9    5689767    rs34046693    T    C    79.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.85;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:109,0,29
9    5720350    rs67224342    G    C    657.24    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.19;DB;DP=76;Dels=0.0;FS=5.426;HRun=0;HaplotypeScore=1.7333;MQ=59.7;MQ0=0;MQRankSum=-0.77;QD=8.65;ReadPosRankSum=0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:48,28:76:99:687,0,1611
9    5732532    rs76581785    GTT    G    167.96    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=31;FS=9.89;HRun=11;HaplotypeScore=137.6026;IndelType=D;MQ=59.21;MQ0=0;MQRankSum=0.54;QD=5.42;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:20,10:31:99:207,0,664
9    5742807    .    A    AAC    303.92    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.191;DP=20;FS=0.0;HRun=0;HaplotypeScore=65.6937;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=0.836;QD=15.2;ReadPosRankSum=1.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:11,9:20:99:343,0,356
9    5746082    .    T    C    610.54    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.802;DP=54;Dels=0.0;FS=4.741;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.508;QD=11.31;ReadPosRankSum=-0.704;SNPEFF_AMINO_ACID_CHANGE=M337T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_5745931_5746083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381532    GT:AD:DP:GQ:PL    0/1:28,26:54:99:641,0,876
9    5747187    rs10815278    C    T    65.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.24;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:6,3:9:95.15:95,0,221
9    5747236    rs34754676    C    T    230.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.288;QD=12.79;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:10,8:18:99:260,0,364
9    5754988    rs7038447    A    T    120.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=15;Dels=0.0;FS=2.796;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=8.07;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:9,6:15:99:151,0,278
9    5756035    rs13299243    G    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
9    5762482    rs35750762    G    T    356.48    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.239;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-1.55;QD=14.26;ReadPosRankSum=-0.596;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462592    GT:AD:DP:GQ:PL    0/1:9,16:25:99:386,0,209
9    5762533    rs1543526    A    C    499.65    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=39;Dels=0.0;FS=2.814;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=1.784;QD=12.81;ReadPosRankSum=0.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462592    GT:AD:DP:GQ:PL    0/1:19,20:39:99:530,0,654
9    5769494    rs1323273    A    T    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.91;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276898    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,140
9    5769998    rs734548    A    G    33.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=6.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1432;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251879    GT:AD:DP:GQ:PL    0/1:2,3:5:45.01:64,0,45
9    5811405    rs76915218    C    A    67.22    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=5.17;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475005    GT:AD:DP:GQ:PL    0/1:9,4:13:97.21:97,0,307
9    5812355    rs2296057    C    A    150.27    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=25.05;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475005    GT:AD:DP:GQ:PL    0/1:1,5:6:20.52:180,0,21
9    5812754    .    T    TAGTG    458.65    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.435;DP=18;FS=0.0;HRun=0;HaplotypeScore=63.5601;IndelType=I;MQ=54.92;MQ0=0;MQRankSum=-0.318;QD=25.48;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ERMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339450    GT:AD:DP:GQ:PL    0/1:12,6:18:99:498,0,437
9    5923326    rs7045445    C    T    988.47    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=5.176;DB;DP=72;Dels=0.0;FS=2.78;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.769;QD=13.73;ReadPosRankSum=1.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA2026;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381461    GT:AD:DP:GQ:PL    0/1:39,33:72:99:1018,0,1078
9    5928844    rs77666370    G    GT    170.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=14.9884;IndelType=I;MQ=62.13;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA2026;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381461    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:212,15,0
9    5929167    rs7029054    T    C    2900.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.45;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA2026;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381461    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2934,214,0
9    5968416    rs3739649    A    G    3750.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.78;MQ0=0;QD=35.05;SNPEFF_AMINO_ACID_CHANGE=L538;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_5968177_5969436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA2026;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513355    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3751,277,0
9    5969249    rs10739080    A    G    512.04    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=40;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=0.6651;MQ=59.53;MQ0=0;MQRankSum=0.639;QD=12.8;ReadPosRankSum=0.285;SNPEFF_AMINO_ACID_CHANGE=L261;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_5968177_5969436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA2026;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000513355    GT:AD:DP:GQ:PL    0/1:22,18:40:99:542,0,686
9    5969517    rs7030731    C    T    172.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA2026;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381461    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
9    5969525    rs10815326    G    A    74.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.85;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA2026;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381461    GT:AD:DP:GQ:PL    0/1:2,3:5:60.21:104,0,60
9    5988333    rs2291055    C    T    1432.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.02;FS=0.0;HRun=7;HaplotypeScore=1.9648;MQ=59.55;MQ0=0;QD=28.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIAA2026;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381461    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1465,117,0
9    6012734    rs106033    A    C    772.41    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=1.993;DB;DP=50;Dels=0.0;FS=6.065;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.531;QD=15.45;ReadPosRankSum=1.012;SNPEFF_AMINO_ACID_CHANGE=L958;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_6011043_6015618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259569    GT:AD:DP:GQ:PL    0/1:23,27:50:99:802,0,766
9    6251012    rs1317230    C    A    189.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.154;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=13.57;ReadPosRankSum=0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381434    GT:AD:DP:GQ:PL    0/1:7,7:14:99:220,0,253
9    6251455    rs1854709    T    C    158.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381434    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
9    6253571    rs10975519    C    T    368.25    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=34;Dels=0.0;FS=3.155;HRun=1;HaplotypeScore=0.6651;MQ=59.32;MQ0=0;MQRankSum=0.496;QD=10.83;ReadPosRankSum=-0.035;SNPEFF_AMINO_ACID_CHANGE=Y121;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_6253552_6253602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456383    GT:AD:DP:GQ:PL    0/1:21,13:34:99:398,0,647
9    6253710    rs10975520    G    C    114.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=11.48;ReadPosRankSum=1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381434    GT:AD:DP:GQ:PL    0/1:5,5:10:99:145,0,175
9    6256292    rs1048274    G    A    207.59    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=20.76;ReadPosRankSum=-0.895;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381434    GT:AD:DP:GQ:PL    0/1:3,7:10:96.44:238,0,96
9    6328440    rs11553814    C    T    98.68    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.97;ReadPosRankSum=0.896;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_6328404_6328962;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314556    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,257
9    6328947    rs3847262    T    C    1724.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9925;MQ=60.2;MQ0=0;MQRankSum=1.155;QD=31.93;ReadPosRankSum=0.449;SNPEFF_AMINO_ACID_CHANGE=F118L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_6328404_6328962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314556    GT:AD:DP:GQ:PL    1/1:1,53:54:99:1757,99,0
9    6329010    .    TG    T    482.06    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.183;DP=49;FS=5.017;HRun=2;HaplotypeScore=224.8195;IndelType=D;MQ=60.06;MQ0=0;MQRankSum=0.387;QD=9.84;ReadPosRankSum=0.774;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_6328349_6330920;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000344545    GT:AD:DP:GQ:PL    0/1:31,18:49:99:521,0,1143
9    6329888    rs898673    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    6330915    rs1037885    G    A    918.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=38.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381428    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:952,69,0
9    6475319    rs7852539    G    A    1486.14    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.421;DB;DP=79;Dels=0.0;FS=1.892;HRun=0;HaplotypeScore=3.6985;MQ=60.0;MQ0=0;MQRankSum=-1.055;QD=18.81;ReadPosRankSum=0.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UHRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276893    GT:AD:DP:GQ:PL    0/1:34,45:79:99:1516,0,1097
9    6499821    rs113281833    TC    T    470.89    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=4.882;DB;DP=55;FS=4.332;HRun=8;HaplotypeScore=147.3668;IndelType=D;MQ=60.2;MQ0=0;MQRankSum=1.013;QD=8.56;ReadPosRankSum=1.658;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UHRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479000    GT:AD:DP:GQ:PL    0/1:31,24:55:99:510,0,893
9    6499994    rs1929929    C    T    162.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=13.55;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UHRF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479000    GT:AD:DP:GQ:PL    0/1:6,6:12:99:193,0,160
9    6506038    rs33962342    C    T    980.10    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.809;DB;DP=63;Dels=0.0;FS=0.997;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.483;QD=15.56;ReadPosRankSum=-0.852;SNPEFF_AMINO_ACID_CHANGE=C756;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_6506033_6507054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=UHRF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276893    GT:AD:DP:GQ:PL    0/1:28,35:63:99:1010,0,778
9    6533010    rs2228098    C    G    1970.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.08;MQ0=0;QD=34.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477960    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2003,150,0
9    6534845    rs2282160    T    C    317.92    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.274;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.49;MQ0=0;MQRankSum=-0.639;QD=22.71;ReadPosRankSum=-0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321612    GT:AD:DP:GQ:PL    0/1:2,12:14:29.85:348,0,30
9    6550734    rs34948145    G    T    578.49    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=4.925;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.936;QD=17.01;ReadPosRankSum=-1.665;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467946    GT:AD:DP:GQ:PL    0/1:15,19:34:99:608,0,415
9    6587359    rs113794486    C    T    91.44    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.051;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=6.53;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463305    GT:AD:DP:GQ:PL    0/1:10,4:14:99:121,0,271
9    6592802    .    C    CG    718.69    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.043;DP=35;FS=0.0;HRun=0;HaplotypeScore=78.8857;IndelType=I;MQ=57.15;MQ0=0;MQRankSum=0.479;QD=20.53;ReadPosRankSum=1.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321612    GT:AD:DP:GQ:PL    0/1:17,18:35:99:758,0,600
9    6594803    .    A    AAAAGAAAG    462.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DP=12;FS=0.0;HRun=0;HaplotypeScore=83.1213;IndelType=I;MQ=51.75;MQ0=0;MQRankSum=-0.741;QD=38.53;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321612    GT:AD:DP:GQ:PL    0/1:6,5:12:99:501,0,273
9    6620059    rs2118653    A    G    177.59    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=14.8;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321612    GT:AD:DP:GQ:PL    0/1:5,7:12:99:208,0,172
9    6668857    rs113881287    C    A    42.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.1;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RNF2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442955    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:72,0,20
9    6668911    rs11789414    C    A    282.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.332;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.705;QD=17.65;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RNF2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442955    GT:AD:DP:GQ:PL    0/1:6,10:16:99:312,0,204
9    6669375    rs2297556    C    G    283.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.701;QD=14.17;ReadPosRankSum=0.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RNF2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442955    GT:AD:DP:GQ:PL    0/1:10,10:20:99:313,0,315
9    6980688    rs818912    A    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381306    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    6986267    rs912207    T    G    161.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381306    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
9    6986291    rs3750488    C    G    219.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381306    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:253,18,0
9    6990217    rs2821451    C    G    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494570    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
9    6990548    rs146818743    ATT    A    251.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.948;DB;DP=27;FS=0.0;HRun=17;HaplotypeScore=190.5399;IndelType=D;MQ=53.44;MQ0=0;MQRankSum=-0.118;QD=9.31;ReadPosRankSum=-0.829;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494570    GT:AD:DP:GQ:PL    1/1:10,12:27:25.53:293,26,0
9    7015793    rs74622166    T    C    290.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=36.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438023    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
9    7016001    rs818883    G    T    490.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438023    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:524,39,0
9    7046700    rs78989195    G    A    286.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381306    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
9    7105548    rs10758825    G    C    612.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495890    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:646,48,0
9    7105651    rs1407863    C    G    205.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495890    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
9    7170006    rs7022348    G    A    2356.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.38;DB;DP=82;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=1.5661;MQ=59.72;MQ0=0;MQRankSum=-0.137;QD=28.73;ReadPosRankSum=0.563;SNPEFF_AMINO_ACID_CHANGE=S1037N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_7169798_7170932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381306    GT:AD:DP:GQ:PL    1/1:2,79:82:99:2389,157,0
9    7174430    rs7029684    T    C    271.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381306    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:304,24,0
9    7798435    rs1254    C    T    325.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.83;MQ0=0;QD=36.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469050    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
9    7798518    rs4742410    G    C    1578.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=33.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469050    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1611,117,0
9    7799363    rs113617022    ACCCCGCCT    A    1351.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=259.9256;IndelType=D;MQ=37.91;MQ0=0;QD=51.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358227    GT:AD:DP:GQ:PL    1/1:4,22:26:57.19:1393,57,0
9    7799606    rs14059    C    A    759    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=L43;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_7799461_7800067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf123;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358227    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:792,60,0
9    7799653    rs1127430    G    T    542.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=31.9;SNPEFF_AMINO_ACID_CHANGE=P28T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_7799461_7800067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf123;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358227    GT:AD:DP:GQ:PL    1/1:0,16:17:48.14:575,48,0
9    8340155    rs4740935    A    C    169.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
9    8340168    rs4742483    C    A    156.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:189,15,0
9    8341445    rs3736381    T    C    119.19    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.84;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    0/1:1,4:5:27.96:149,0,28
9    8375800    .    C    A    99.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.468;QD=8.33;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    0/1:8,4:12:99:130,0,250
9    8376477    rs1566447    C    T    373.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:407,30,0
9    8376899    rs2291958    T    C    42.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    0/1:2,3:5:69.84:73,0,70
9    8389592    rs904779    A    T    81.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
9    8436406    rs10977101    C    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    8436560    rs1359117    A    T    294.13    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.222;QD=15.48;ReadPosRankSum=-0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    0/1:8,11:19:99:324,0,246
9    8436703    rs1359118    C    G    991.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1024,75,0
9    8451816    rs4742505    T    A    833.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5773;MQ=58.97;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:866,69,0
9    8451817    rs4742506    T    C    811.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5773;MQ=59.01;MQ0=0;QD=28.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,27:28:66.18:845,66,0
9    8454566    rs7031287    T    C    441.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346816    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:474,36,0
9    9090876    rs324466    G    C    2614.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.35;MQ0=1;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381196    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2648,193,0
9    9091314    rs324467    A    T    599.68    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.583;DB;DP=73;Dels=0.03;FS=1.285;HRun=3;HaplotypeScore=5.8359;MQ=48.93;MQ0=0;MQRankSum=-1.142;QD=8.0;ReadPosRankSum=-0.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381196    GT:AD:DP:GQ:PL    0/1:40,32:73:99:630,0,1239
9    9425588    rs111797092    C    CACTT    1356.98    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.517;DB;DP=28;FS=3.852;HRun=0;HaplotypeScore=165.6244;IndelType=I;MQ=54.8;MQ0=0;MQRankSum=-0.551;QD=48.46;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381196    GT:AD:DP:GQ:PL    0/1:10,18:28:99:1396,0,495
9    9425606    rs62532950    G    T    563.61    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.705;DB;DP=32;Dels=0.0;FS=1.451;HRun=1;HaplotypeScore=0.9999;MQ=55.11;MQ0=0;MQRankSum=-0.292;QD=17.61;ReadPosRankSum=-0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381196    GT:AD:DP:GQ:PL    0/1:12,20:32:99:594,0,379
9    9425716    rs1888890    G    A    256.24    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.24;MQ0=0;MQRankSum=-1.774;QD=19.71;ReadPosRankSum=-2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381196    GT:AD:DP:GQ:PL    0/1:4,9:13:99:286,0,129
9    12693761    rs58798562    TA    T    130.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=142.6072;IndelType=D;MQ=29.0;MQ0=0;QD=18.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381137    GT:AD:DP:GQ:PL    1/1:2,5:7:15.04:172,15,0
9    12693767    rs59527529    TTGTGTGAAATGTC    T    578.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=130.868;IndelType=D;MQ=29.0;MQ0=0;QD=96.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381137    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:620,15,0
9    12693782    .    C    CT    244.60    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=0;HaplotypeScore=151.4975;IndelType=I;MQ=29.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381137    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:287,18,0
9    12702597    rs72702632    A    G    34.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.83;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470909    GT:AD:DP:GQ:PL    0/1:3,2:5:64.16:64,0,107
9    12704725    rs2733832    C    T    1120.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=27.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470909    GT:AD:DP:GQ:PL    1/1:0,41:41:96.28:1153,96,0
9    12708910    rs2733834    C    G    629.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.67;MQ0=0;QD=39.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381136    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:663,48,0
9    12708958    rs147565972    T    TA    877.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=83.9176;IndelType=I;MQ=61.94;MQ0=0;QD=39.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381136    GT:AD:DP:GQ:PL    1/1:1,21:22:63.21:919,63,0
9    12709305    rs683    C    A    361.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.423;QD=32.84;ReadPosRankSum=-0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381136    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:394,30,0
9    12775488    rs10491742    G    A    178.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf150;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489107    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:211,15,0
9    12775861    rs3833707    T    TGGCGGCGGC    861.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=96.0123;IndelType=I;MQ=43.95;MQ0=0;QD=86.13;SNPEFF_AMINO_ACID_CHANGE=-50GGG;SNPEFF_CODON_CHANGE=-/GGCGGCGGC;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_9_12775020_12776026;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf150;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319264    GT:AD:DP:GQ:PL    1/1:1,7:10:27.09:903,27,0
9    12775889    rs3750501    A    G    140.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=45.91;MQ0=0;QD=20.02;SNPEFF_AMINO_ACID_CHANGE=S59G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_12775020_12776026;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf150;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319264    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:173,15,0
9    13108794    rs3765550    T    C    518.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.291;QD=17.29;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    0/1:12,18:30:99:549,0,399
9    13109111    rs10732331    C    T    292.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,15:15:24.08:326,24,0
9    13112116    rs10809904    A    G    1898.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=1.8824;MQ=59.6;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=I111;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_13112023_13112145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541093    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1932,150,0
9    13115422    rs2274647    T    G    229.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-2.18;QD=15.31;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    0/1:6,9:15:99:260,0,208
9    13121662    .    A    G    330.77    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.381;QD=7.88;ReadPosRankSum=-0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    0/1:29,13:42:99:361,0,1015
9    13125130    rs3818595    T    C    1057.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=39.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,27:27:81.26:1090,81,0
9    13125201    rs2297003    T    C    2069.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=59.29;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2102,159,0
9    13126470    rs10738323    C    G    111.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:144,12,0
9    13165218    rs10960959    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    13175639    .    C    A    296.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.781;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.84;MQ0=0;MQRankSum=1.2;QD=12.34;ReadPosRankSum=0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    0/1:14,10:24:99:326,0,516
9    13175715    rs139805117    TGAG    T    2593.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=0;HaplotypeScore=261.6902;IndelType=D;MQ=56.41;MQ0=0;QD=48.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:1,53:54:99:2635,160,0
9    13183256    rs10733255    A    G    245.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:279,24,0
9    13192320    rs1331676    C    G    1846.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1879,135,0
9    13196441    rs4741291    T    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    13219933    rs1041507    A    G    246.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319217    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
9    13927980    rs35960404    C    A    175.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.529;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.84;MQ0=0;MQRankSum=-0.858;QD=8.38;ReadPosRankSum=0.336;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_13927970_13928060;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381010    GT:AD:DP:GQ:PL    0/1:14,7:21:99:206,0,480
9    13928011    rs2382426    T    G    609.75    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=2.612;DB;DP=35;Dels=0.0;FS=1.64;HRun=1;HaplotypeScore=0.0;MQ=56.19;MQ0=0;MQRankSum=2.541;QD=17.42;ReadPosRankSum=-0.409;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_13927970_13928060;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381010    GT:AD:DP:GQ:PL    0/1:11,24:35:99:640,0,298
9    13928028    rs2382427    T    C    1234.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.85;MQ0=0;QD=32.48;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_13927970_13928060;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381010    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1267,93,0
9    13928080    rs147030758    TATTC    T    557.30    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.379;DB;DP=37;FS=8.264;HRun=0;HaplotypeScore=313.468;IndelType=D;MQ=56.59;MQ0=0;MQRankSum=-1.184;QD=15.06;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381010    GT:AD:DP:GQ:PL    0/1:25,12:37:99:596,0,1967
9    14120655    rs6474818    A    G    586.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380924    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:619,45,0
9    14155769    rs12349255    T    C    141.93    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=10.92;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380924    GT:AD:DP:GQ:PL    0/1:7,5:13:99:172,0,248
9    14306944    rs4741362    A    G    836.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493697    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:870,66,0
9    14313712    rs2273933    T    G    126.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.04;MQ0=0;QD=21.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380934    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:159,12,0
9    14618856    rs3802482    C    T    265.04    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=24.09;ReadPosRankSum=1.708;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380916    GT:AD:DP:GQ:PL    0/1:3,8:11:80.68:295,0,81
9    14619168    rs10810187    A    G    263.61    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=18;Dels=0.0;FS=2.197;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=14.65;ReadPosRankSum=1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380916    GT:AD:DP:GQ:PL    0/1:7,11:18:99:294,0,193
9    14640055    rs6474849    C    T    3085.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8882;MQ=59.27;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380916    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3118,229,0
9    14658615    rs10756598    G    A    88.75    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=0.731;QD=14.79;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380916    GT:AD:DP:GQ:PL    0/1:2,4:6:16.51:119,0,17
9    14659034    rs9298702    T    C    35.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380916    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:66,0,69
9    14662459    rs6474850    A    G    77.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380916    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
9    14690419    rs10961672    T    C    1102.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380916    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1135,87,0
9    14690447    rs2382477    G    T    960    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380916    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:993,72,0
9    14737506    rs10961689    T    G    2562.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.68;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=Q2143P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14737394_14737593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2596,202,0
9    14737616    rs10961690    A    G    1330.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1363,99,0
9    14740300    rs2270528    A    G    584.44    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.332;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8924;MQ=59.3;MQ0=0;MQRankSum=0.958;QD=17.71;ReadPosRankSum=0.343;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:15,18:33:99:614,0,439
9    14740461    rs8181212    A    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
9    14746306    rs41265300    T    A    1012.73    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=75;Dels=0.0;FS=2.84;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.055;QD=13.5;ReadPosRankSum=-0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:36,39:75:99:1043,0,1110
9    14746846    rs17290109    G    A    485.94    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.96;DB;DP=37;Dels=0.0;FS=14.382;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.143;QD=13.13;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486223    GT:AD:DP:GQ:PL    0/1:20,17:37:99:516,0,629
9    14756318    rs57793294    C    CA    470.86    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.512;DB;DP=37;FS=3.043;HRun=9;HaplotypeScore=84.7953;IndelType=I;MQ=60.87;MQ0=0;MQRankSum=0.091;QD=12.73;ReadPosRankSum=-1.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:17,19:37:99:510,0,266
9    14756483    rs10810233    A    G    545.35    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=0.701;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.401;QD=20.98;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:9,17:26:99:575,0,265
9    14759725    rs7045154    A    G    2863.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2896,214,0
9    14770451    rs191595596    T    C    104.57    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.736;QD=14.94;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:2,5:7:15.55:135,0,16
9    14770521    rs17218977    G    A    77.81    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.55;MQ0=0;MQRankSum=0.424;QD=4.86;ReadPosRankSum=-0.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:12,4:16:99:108,0,442
9    14770658    rs17219005    G    T    1048.89    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=69;Dels=0.0;FS=3.53;HRun=1;HaplotypeScore=0.7887;MQ=59.33;MQ0=0;MQRankSum=0.198;QD=15.2;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=I1668;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14770603_14770804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1079,0,1097
9    14774329    rs7018782    T    C    452.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466679    GT:AD:DP:GQ:PL    1/1:0,15:15:42.10:486,42,0
9    14775729    rs71323911    A    AG    959.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.161;DB;DP=111;FS=0.0;HRun=0;HaplotypeScore=1112.0954;IndelType=I;MQ=49.32;MQ0=0;MQRankSum=2.07;QD=8.65;ReadPosRankSum=0.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466679    GT:AD:DP:GQ:PL    1/1:53,52:111:99:1002,111,0
9    14775853    rs1032474    A    G    5821.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4344;MQ=53.09;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=D133;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14775787_14776254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380894    GT:AD:DP:GQ:PL    1/1:0,173:173:99:5821,469,0
9    14775859    rs10733289    G    A    2604.12    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.272;DB;DP=171;Dels=0.0;FS=1.3;HRun=0;HaplotypeScore=1.7333;MQ=53.16;MQ0=0;MQRankSum=1.394;QD=15.23;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=A131;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14775787_14776254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380894    GT:AD:DP:GQ:PL    0/1:80,91:171:99:2634,0,2419
9    14776027    rs2131880    C    T    1066.04    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=3.234;DB;DP=73;Dels=0.0;FS=4.691;HRun=0;HaplotypeScore=1.9157;MQ=60.0;MQ0=0;MQRankSum=0.969;QD=14.6;ReadPosRankSum=-0.349;SNPEFF_AMINO_ACID_CHANGE=A1539;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14775787_14776201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:35,38:73:99:1096,0,1030
9    14784205    rs41265302    T    C    125.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.91;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497634    GT:AD:DP:GQ:PL    0/1:4,5:9:99:155,0,135
9    14784312    rs41265304    C    T    959.57    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=2.133;DB;DP=68;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9106;MQ=59.45;MQ0=0;MQRankSum=-1.265;QD=14.11;ReadPosRankSum=0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:29,39:68:99:990,0,910
9    14784389    rs41265306    G    A    1781.95    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=108;Dels=0.0;FS=1.605;HRun=1;HaplotypeScore=0.9867;MQ=59.09;MQ0=0;MQRankSum=-0.725;QD=16.5;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=T1474I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14784368_14784632;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:48,60:108:99:1812,0,1452
9    14801710    rs35870000    C    A    1225.32    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.481;DB;DP=81;Dels=0.0;FS=3.057;HRun=0;HaplotypeScore=1.6988;MQ=59.72;MQ0=0;MQRankSum=1.235;QD=15.13;ReadPosRankSum=-0.438;SNPEFF_AMINO_ACID_CHANGE=A1212S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14801650_14801872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1255,0,1205
9    14801738    rs16932300    G    C    1425.42    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.54;MQ0=0;MQRankSum=-0.066;QD=14.25;ReadPosRankSum=-2.159;SNPEFF_AMINO_ACID_CHANGE=S1202R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14801650_14801872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:51,49:100:99:1455,0,1692
9    14804733    rs10810248    T    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
9    14806848    rs10810249    C    A    1158.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.34;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1191,87,0
9    14813072    rs117608184    G    A    3877.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.202;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=1.295;QD=34.93;ReadPosRankSum=-0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:1,110:111:99:3878,246,0
9    14819370    rs7023244    G    T    4119.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.51;SNPEFF_AMINO_ACID_CHANGE=S803Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14819232_14819440;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,116:116:99:4120,307,0
9    14823605    rs151207053    T    A    89.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
9    14825142    rs13289400    G    A    580.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:613,45,0
9    14841387    rs1552896    C    G    755.13    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.801;DB;DP=65;Dels=0.0;FS=1.265;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=1.439;QD=11.62;ReadPosRankSum=0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:39,26:65:99:785,0,1247
9    14846036    rs2779500    C    G    1730.61    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=91;Dels=0.0;FS=4.464;HRun=0;HaplotypeScore=1.7675;MQ=59.75;MQ0=0;MQRankSum=-0.549;QD=19.02;ReadPosRankSum=1.46;SNPEFF_AMINO_ACID_CHANGE=V439L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_14845958_14846089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:38,53:91:99:1761,0,1087
9    14846122    rs2642404    C    G    725.15    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.804;DB;DP=47;Dels=0.0;FS=3.739;HRun=0;HaplotypeScore=0.5784;MQ=59.51;MQ0=0;MQRankSum=0.778;QD=15.43;ReadPosRankSum=0.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:25,22:47:99:755,0,773
9    14848892    rs1021493    A    G    331.35    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.024;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.024;QD=11.83;ReadPosRankSum=-0.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:15,13:28:99:361,0,548
9    14848915    rs1021494    T    A    313.18    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.844;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8773;MQ=58.78;MQ0=0;MQRankSum=-0.844;QD=16.48;ReadPosRankSum=0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:8,10:19:99:343,0,270
9    14851617    rs2818940    T    C    1576.80    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=3.582;DB;DP=108;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=3.9756;MQ=59.79;MQ0=0;MQRankSum=-0.664;QD=14.47;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:56,51:108:99:1607,0,1710
9    14851703    rs729492    G    A    347.32    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.157;QD=13.36;ReadPosRankSum=0.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:14,12:26:99:377,0,466
9    14851782    rs903312    T    C    250.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:284,24,0
9    14868653    rs7856810    A    T    546.66    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.426;DB;DP=39;Dels=0.0;FS=5.87;HRun=4;HaplotypeScore=0.5784;MQ=59.41;MQ0=0;MQRankSum=0.72;QD=14.02;ReadPosRankSum=-0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380880    GT:AD:DP:GQ:PL    0/1:18,21:39:99:577,0,499
9    15017273    rs10961831    C    G    73.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=1.754;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-54D18.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399862    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,144
9    15017410    rs1047677    G    T    606.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.384;DB;DP=35;Dels=0.0;FS=3.12;HRun=0;HaplotypeScore=0.0;MQ=53.78;MQ0=0;MQRankSum=0.354;QD=17.33;ReadPosRankSum=-0.724;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-54D18.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399862    GT:AD:DP:GQ:PL    0/1:14,21:35:99:636,0,396
9    15017531    rs35447511    TA    T    156.97    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=25;FS=6.107;HRun=13;HaplotypeScore=125.8884;IndelType=D;MQ=56.52;MQ0=0;MQRankSum=1.056;QD=6.28;ReadPosRankSum=0.127;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-54D18.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399862    GT:AD:DP:GQ:PL    0/1:6,13:25:59.38:196,0,59
9    15047869    rs12336840    A    G    215.33    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.9734;MQ=56.82;MQ0=0;MQRankSum=1.109;QD=17.94;ReadPosRankSum=-0.185;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-54D18.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423965    GT:AD:DP:GQ:PL    0/1:3,9:12:88.23:245,0,88
9    15183461    rs143730041    AC    A    71.50    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=1.358;DB;DP=24;FS=18.921;HRun=1;HaplotypeScore=162.6712;IndelType=D;MQ=50.93;MQ0=0;MQRankSum=0.328;QD=2.98;ReadPosRankSum=0.983;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505732    GT:AD:DP:GQ:PL    0/1:17,7:24:99:111,0,293
9    15183532    rs2057478    C    G    198.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=20;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=51.58;MQ0=0;MQRankSum=1.733;QD=9.93;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505732    GT:AD:DP:GQ:PL    0/1:12,8:20:99:229,0,311
9    15188106    rs1407977    T    C    275.13    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.515;DB;DP=45;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=0.5784;MQ=59.59;MQ0=0;MQRankSum=0.113;QD=6.11;ReadPosRankSum=0.163;SNPEFF_AMINO_ACID_CHANGE=I255V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_15187969_15188130;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507285    GT:AD:DP:GQ:PL    0/1:32,13:45:99:305,0,1084
9    15190494    rs475932    A    C    268.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=29.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541445    GT:AD:DP:GQ:PL    1/1:1,8:9:24.07:302,24,0
9    15192720    rs566820    A    G    755.23    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.161;DB;DP=51;Dels=0.0;FS=2.251;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.576;QD=14.81;ReadPosRankSum=-0.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297615    GT:AD:DP:GQ:PL    0/1:27,24:51:99:785,0,931
9    15199657    rs1215175    T    C    39.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.47;MQ0=0;QD=13.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297615    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
9    15267981    rs552693    G    C    1576.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297615    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1609,117,0
9    15433427    rs10115540    T    C    1094.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380807    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1128,90,0
9    15446868    rs10756666    A    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380807    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    15447361    rs3830477    A    AACT    2086.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.251;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=132.7045;IndelType=I;MQ=52.57;MQ0=0;MQRankSum=-1.155;QD=46.36;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380799    GT:AD:DP:GQ:PL    1/1:12,33:45:60.14:2128,60,0
9    15447493    rs4741501    T    G    122.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380799    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
9    15451207    rs3830476    T    TG    279.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=14.5413;IndelType=I;MQ=60.0;MQ0=0;QD=39.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380799    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:322,21,0
9    15457853    rs10756669    G    A    204.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380799    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:237,18,0
9    15458080    rs113291706    A    AT    850.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.683;DB;DP=46;FS=0.0;HRun=11;HaplotypeScore=187.8266;IndelType=I;MQ=58.58;MQ0=0;MQRankSum=0.368;QD=18.49;ReadPosRankSum=-1.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380799    GT:AD:DP:GQ:PL    1/1:16,30:46:72.43:892,72,0
9    15460002    rs4741506    G    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380733    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    15468220    .    T    G    107.80    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7523;MQ=47.12;MQ0=0;MQRankSum=-0.978;QD=6.74;ReadPosRankSum=2.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380715    GT:AD:DP:GQ:PL    0/1:5,11:16:99:138,0,118
9    15468414    rs34331255    CCTT    C    7777.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;FS=0.0;HRun=0;HaplotypeScore=777.5957;IndelType=D;MQ=56.59;MQ0=0;QD=55.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380715    GT:AD:DP:GQ:PL    1/1:0,140:140:99:7778,418,0
9    15468480    rs4741507    T    C    3327.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.15;MQ0=0;QD=37.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380715    GT:AD:DP:GQ:PL    1/1:0,88:89:99:3327,247,0
9    15469733    rs4741508    T    G    75.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380715    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
9    15472411    rs1058252    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380715    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    15486721    rs2737829    G    C    668.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380715    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:702,51,0
9    15486958    rs2737828    A    T    1056.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488797    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1090,84,0
9    15527149    rs10962056    G    A    207.62    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.123;DB;DP=21;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=57.26;MQ0=0;MQRankSum=-1.05;QD=9.89;ReadPosRankSum=1.485;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FTH1P12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432137    GT:AD:DP:GQ:PL    0/1:13,8:21:99:238,0,323
9    15591372    rs4741510    T    A    1033.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_AMINO_ACID_CHANGE=S121T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_15591364_15591554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297641    GT:AD:DP:GQ:PL    1/1:0,33:33:78.26:1067,78,0
9    15623163    rs7863088    A    G    979.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297641    GT:AD:DP:GQ:PL    1/1:0,31:31:78.23:1012,78,0
9    15623462    rs405352    T    C    665.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=51.36;MQ0=0;QD=12.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297641    GT:AD:DP:GQ:PL    1/1:0,53:53:83.76:698,84,0
9    15623473    rs57136296    G    GCGCGCACACACACA    3068.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=616.6675;IndelType=I;MQ=48.31;MQ0=0;QD=76.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297641    GT:AD:DP:GQ:PL    1/1:16,8:40:99:3111,111,0
9    15695418    rs1355172    G    A    546.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297641    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:579,42,0
9    15723547    rs10810436    T    C    337.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297641    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:370,27,0
9    15874826    rs2794633    T    C    131.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297641    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
9    15920149    rs1536686    A    T    204.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359391    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
9    15922137    rs1328285    A    G    1619.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=D115G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_15922109_15922201;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359391    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1653,126,0
9    16582890    rs35366915    G    GACAC    640.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=194.7785;IndelType=I;MQ=47.63;MQ0=0;QD=26.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:11,9:24:42.14:683,42,0
9    16685539    rs7046068    T    C    1027.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1060,78,0
9    16699008    rs10810593    A    G    248.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:282,24,0
9    16699287    rs10738447    C    T    777.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:810,60,0
9    16699292    rs10738448    C    T    739.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:772,57,0
9    16727698    rs1360285    G    A    570.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:603,48,0
9    16738269    rs7858914    G    T    513.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:546,42,0
9    16738307    rs7858709    A    C    679.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.12;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:712,54,0
9    16738312    rs7858712    A    G    662.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.22;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:696,57,0
9    16738338    rs35869698    GA    G    477.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=10;HaplotypeScore=173.0768;IndelType=D;MQ=58.77;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:0,20:20:59.99:520,60,0
9    16738556    rs35751309    C    CTTTT    834.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=38.5796;IndelType=I;MQ=39.92;MQ0=0;QD=75.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    1/1:4,7:11:33.11:876,33,0
9    16870501    rs62541923    C    A    112.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.1;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380666    GT:AD:DP:GQ:PL    0/1:3,4:7:93.05:143,0,93
9    17135115    rs41306071    C    T    66.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=15.441;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=8.35;ReadPosRankSum=-0.937;SNPEFF_AMINO_ACID_CHANGE=L18;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_17135034_17135423;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:4,4:8:96.83:97,0,135
9    17135434    rs12003380    G    C    84.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:116,9,0
9    17143153    rs35311962    T    C    642.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.15;DB;DP=35;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=3.0909;MQ=59.34;MQ0=0;MQRankSum=1.65;QD=18.35;ReadPosRankSum=0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:15,20:35:99:672,0,495
9    17143511    rs36086880    A    AG    218.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=19.3328;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=21.89;ReadPosRankSum=2.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:4,6:10:99:258,0,138
9    17235563    rs3814137    C    A    447.40    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.933;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.07;MQ0=0;MQRankSum=-0.686;QD=14.91;ReadPosRankSum=0.894;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:16,14:30:99:477,0,575
9    17235642    rs67017076    AT    A    2345.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.0;HRun=7;HaplotypeScore=221.6669;IndelType=D;MQ=60.39;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    1/1:2,78:80:99:2387,235,0
9    17236365    rs3814138    C    T    597.11    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.624;DB;DP=54;Dels=0.0;FS=3.305;HRun=3;HaplotypeScore=0.9997;MQ=59.22;MQ0=0;MQRankSum=-1.13;QD=11.06;ReadPosRankSum=-1.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:28,26:54:99:627,0,923
9    17236376    rs3814139    A    G    772.21    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.116;DB;DP=66;Dels=0.0;FS=2.597;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-0.494;QD=11.7;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:38,28:66:99:802,0,1115
9    17273609    rs636093    G    A    178.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.568;QD=17.83;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,125
9    17309311    rs78359995    A    G    320.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.582;QD=16.02;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:8,12:20:99:350,0,279
9    17309336    rs10756860    T    C    160.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.191;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=13.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:6,6:12:99:191,0,204
9    17309374    rs6475126    T    A    190.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=21.15;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:3,6:9:95.96:220,0,96
9    17309415    rs7874597    A    G    159.59    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.6;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:1,5:6:23.70:190,0,24
9    17330558    rs3765040    T    A    702.92    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.44;MQ0=0;MQRankSum=-0.84;QD=17.14;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:19,21:40:99:733,0,669
9    17332484    rs72369512    ATT    A    191.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=75.2921;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=11.96;ReadPosRankSum=1.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:4,10:16:99:230,0,140
9    17340864    rs3808782    C    T    529.53    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=3.008;DB;DP=41;Dels=0.0;FS=4.859;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.171;QD=12.92;ReadPosRankSum=0.433;SNPEFF_AMINO_ACID_CHANGE=R562C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_17340825_17340946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:23,18:41:99:560,0,579
9    17342383    rs1442527    C    T    2952.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.85;SNPEFF_AMINO_ACID_CHANGE=D609;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_17342323_17342442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2985,217,0
9    17342517    rs10756869    A    G    299.53    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=19;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=58.53;MQ0=0;MQRankSum=-0.619;QD=15.76;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:8,11:19:99:330,0,246
9    17366568    rs4961548    A    T    361.55    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.155;DB;DP=38;Dels=0.0;FS=6.623;HRun=7;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.395;QD=9.51;ReadPosRankSum=-2.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:20,18:38:99:392,0,707
9    17388125    rs2274916    C    T    1762.30    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=0.61;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.101;QD=19.16;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:38,54:92:99:1792,0,1171
9    17388459    rs1372701    T    C    321.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:354,30,0
9    17394465    rs7035357    G    A    87.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.28;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:8,4:12:99:117,0,300
9    17394536    rs7035276    C    T    355.47    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.496;DB;DP=34;Dels=0.0;FS=4.59;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.39;QD=10.46;ReadPosRankSum=0.992;SNPEFF_AMINO_ACID_CHANGE=T695I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_17394532_17395067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:21,13:34:99:385,0,752
9    17394996    rs3739489    T    C    499.22    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.96;DB;DP=43;Dels=0.0;FS=4.566;HRun=0;HaplotypeScore=1.6229;MQ=60.0;MQ0=0;MQRankSum=-0.126;QD=11.61;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=H848;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_17394532_17395067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:23,20:43:99:529,0,805
9    17395108    rs3739488    C    T    302.91    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.363;QD=11.65;ReadPosRankSum=-0.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:14,12:26:99:333,0,430
9    17409366    rs2780211    G    A    2129.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.725;DB;DP=140;Dels=0.0;FS=4.423;HRun=0;HaplotypeScore=1.8245;MQ=59.67;MQ0=0;MQRankSum=-0.437;QD=15.21;ReadPosRankSum=1.302;SNPEFF_AMINO_ACID_CHANGE=T897;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_17409291_17409471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:70,70:140:99:2160,0,2097
9    17409556    rs2584549    C    T    832.66    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.571;DB;DP=50;Dels=0.0;FS=3.285;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.972;QD=16.65;ReadPosRankSum=-0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:24,26:50:99:863,0,776
9    17457512    rs66683026    TA    T    912.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=8;HaplotypeScore=167.2861;IndelType=D;MQ=59.11;MQ0=0;QD=19.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    1/1:31,16:47:99:954,116,0
9    17463136    rs11790475    C    A    190.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=19.01;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461247    GT:AD:DP:GQ:PL    0/1:4,6:10:96.46:220,0,96
9    17464402    rs1442532    G    C    2182.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461247    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2215,163,0
9    17484629    rs2442005    C    G    44.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.95;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262360    GT:AD:DP:GQ:PL    0/1:1,2:3:34.29:75,0,34
9    17579370    rs3739487    T    C    35.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=17.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
9    17747279    rs2031456    G    A    124.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380607    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
9    17761379    rs1886589    C    T    1211.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380607    GT:AD:DP:GQ:PL    1/1:0,32:32:90.30:1245,90,0
9    17761783    rs2296367    A    C    95.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380607    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:128,12,0
9    17786152    rs2274215    A    T    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    17786153    rs2274216    A    G    35.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
9    18573918    rs13300372    G    C    312.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.525;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.116;QD=14.22;ReadPosRankSum=-0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276935    GT:AD:DP:GQ:PL    0/1:11,11:22:99:343,0,388
9    18574406    rs1341069    G    C    190.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.112;QD=9.09;ReadPosRankSum=1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276935    GT:AD:DP:GQ:PL    0/1:14,7:21:99:221,0,515
9    18657487    rs776777    C    A    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276935    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
9    18657558    rs776776    A    G    359.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276935    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:392,30,0
9    18680679    rs1412672    C    G    41.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.38;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276935    GT:AD:DP:GQ:PL    0/1:2,2:4:53.89:71,0,54
9    18681741    rs72688674    G    T    1106.39    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=5.559;DB;DP=74;Dels=0.0;FS=15.758;HRun=0;HaplotypeScore=0.9665;MQ=57.46;MQ0=0;MQRankSum=0.785;QD=14.95;ReadPosRankSum=0.785;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380566    GT:AD:DP:GQ:PL    0/1:37,36:74:99:1136,0,910
9    18684836    rs140349388    CTG    C    157.67    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=33.7494;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=14.33;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380566    GT:AD:DP:GQ:PL    0/1:6,5:11:99:197,0,315
9    18775810    rs934472    C    A    514.75    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.819;DB;DP=44;Dels=0.0;FS=7.61;HRun=0;HaplotypeScore=0.9933;MQ=59.48;MQ0=0;MQRankSum=-1.137;QD=11.7;ReadPosRankSum=0.404;SNPEFF_AMINO_ACID_CHANGE=L823I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_18775741_18775894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380548    GT:AD:DP:GQ:PL    0/1:24,20:44:99:545,0,651
9    18776840    rs1549986    A    C    373.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=26.64;SNPEFF_AMINO_ACID_CHANGE=I871;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_18776779_18777904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380548    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:406,30,0
9    18777368    rs7033684    T    C    280.82    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=16;Dels=0.0;FS=2.187;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.648;QD=17.55;ReadPosRankSum=-0.295;SNPEFF_AMINO_ACID_CHANGE=S1047;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_18776779_18777904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380548    GT:AD:DP:GQ:PL    0/1:7,9:16:99:311,0,189
9    18795304    rs2289005    C    T    1699.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380548    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1733,135,0
9    18817246    rs1433809    A    C    2267.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8499;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380548    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2301,175,0
9    18817372    rs7873880    C    T    551.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380548    GT:AD:DP:GQ:PL    1/1:0,16:16:45.09:584,45,0
9    18826261    rs112540878    GT    G    1187.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=61;FS=0.0;HRun=12;HaplotypeScore=207.2033;IndelType=D;MQ=60.38;MQ0=0;MQRankSum=0.186;QD=19.46;ReadPosRankSum=0.804;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_18826136_18826461;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000380545    GT:AD:DP:GQ:PL    1/1:5,55:61:99:1229,136,0
9    18826500    rs934469    T    C    1050.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316239    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1084,81,0
9    18829952    rs41304755    A    G    401.09    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.808;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.476;QD=13.37;ReadPosRankSum=-0.229;SNPEFF_AMINO_ACID_CHANGE=D110G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_18829841_18829975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380545    GT:AD:DP:GQ:PL    0/1:16,14:30:99:431,0,542
9    18830087    rs7026429    G    A    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316239    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
9    18887753    rs731370    C    A    335.38    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.391;QD=15.24;ReadPosRankSum=0.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316239    GT:AD:DP:GQ:PL    0/1:9,13:22:99:365,0,312
9    18889544    rs10963819    A    T    379.01    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.084;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.5;MQ0=0;MQRankSum=-0.695;QD=12.23;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316239    GT:AD:DP:GQ:PL    0/1:17,14:31:99:409,0,501
9    18889789    rs34099646    G    A    49.58    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.467;QD=3.1;ReadPosRankSum=1.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316239    GT:AD:DP:GQ:PL    0/1:11,5:16:79.57:80,0,325
9    18907049    rs66579753    A    AT    435.21    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=25;FS=0.0;HRun=3;HaplotypeScore=68.9788;IndelType=I;MQ=60.86;MQ0=0;MQRankSum=1.912;QD=17.41;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316239    GT:AD:DP:GQ:PL    0/1:12,13:25:99:474,0,324
9    18907122    rs1327506    T    C    47.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=-0.55;QD=6.79;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316239    GT:AD:DP:GQ:PL    0/1:3,4:7:77.50:78,0,106
9    18928039    rs1052448    A    G    945.66    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=94;Dels=0.0;FS=1.766;HRun=0;HaplotypeScore=0.6651;MQ=59.8;MQ0=0;MQRankSum=-1.34;QD=10.06;ReadPosRankSum=-0.756;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM154A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380530    GT:AD:DP:GQ:PL    0/1:56,38:94:99:976,0,1823
9    18950787    rs6475273    G    A    951.96    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.445;DB;DP=61;Dels=0.0;FS=5.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=15.61;ReadPosRankSum=-1.015;SNPEFF_AMINO_ACID_CHANGE=P63S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_18950756_18950935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM154A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380530    GT:AD:DP:GQ:PL    0/1:28,33:61:99:982,0,858
9    18950895    rs7021572    T    C    519.84    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=48;Dels=0.0;FS=1.129;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.083;QD=10.83;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=K27E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_18950756_18950935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM154A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380530    GT:AD:DP:GQ:PL    0/1:27,21:48:99:550,0,870
9    18950980    rs6475274    A    T    360.95    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.554;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=1.016;QD=15.69;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM154A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380530    GT:AD:DP:GQ:PL    0/1:11,12:23:99:391,0,383
9    19033006    rs10963921    G    T    38.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_19032869_19033251;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM154A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380530    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:69,0,33
9    19058425    rs11515236    G    A    239.38    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.224;DB;DP=32;Dels=0.0;FS=9.755;HRun=1;HaplotypeScore=0.0;MQ=52.12;MQ0=0;MQRankSum=-0.711;QD=7.48;ReadPosRankSum=0.102;SNPEFF_AMINO_ACID_CHANGE=L644;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_19056616_19058999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    0/1:22,10:32:99:269,0,708
9    19058743    rs10511670    G    C    773.70    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=91;Dels=0.0;FS=0.86;HRun=0;HaplotypeScore=1.8824;MQ=44.1;MQ0=7;MQRankSum=-0.148;QD=8.5;ReadPosRankSum=-1.075;SNPEFF_AMINO_ACID_CHANGE=H538Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_19056616_19058999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    0/1:59,32:91:99:804,0,1758
9    19058821    rs10511671    A    G    983.12    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.446;DB;DP=67;Dels=0.0;FS=9.003;HRun=0;HaplotypeScore=0.0;MQ=50.05;MQ0=0;MQRankSum=-1.262;QD=14.67;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=F164;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_19058762_19058999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415524    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1013,0,1079
9    19060046    rs2291502    C    T    142.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.54;MQ0=0;MQRankSum=-0.101;QD=10.19;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    0/1:7,7:14:99:173,0,217
9    19062942    rs12343169    A    G    703.51    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=0.949;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4274;MQ=58.14;MQ0=0;MQRankSum=-1.991;QD=16.36;ReadPosRankSum=0.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    0/1:16,27:43:99:734,0,507
9    19063765    rs13302453    A    G    364.01    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=41;Dels=0.0;FS=5.073;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=8.88;ReadPosRankSum=-0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    0/1:25,15:41:99:394,0,894
9    19063929    rs10757026    T    G    91.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=9.19;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    0/1:6,4:10:99:122,0,186
9    19080352    rs10963942    A    G    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.46;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
9    19089220    rs11788135    G    T    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
9    19089307    rs10963953    G    A    237.02    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=16;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.34;QD=14.81;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380496    GT:AD:DP:GQ:PL    0/1:7,9:16:99:267,0,174
9    19123745    rs10963972    A    G    1044.73    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=3.459;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.681;QD=19.0;ReadPosRankSum=1.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472715    GT:AD:DP:GQ:PL    0/1:23,32:55:99:1075,0,667
9    19126476    rs3802335    C    T    285.80    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DB;DP=23;Dels=0.0;FS=6.628;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.123;QD=12.43;ReadPosRankSum=1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494753    GT:AD:DP:GQ:PL    0/1:12,11:23:99:316,0,368
9    19126565    rs3824369    T    C    74.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.99;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494753    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:105,0,68
9    19295941    rs10757051    A    G    1665.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DENND4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307015    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1699,135,0
9    19299362    rs10738535    T    C    397.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DENND4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307015    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:430,33,0
9    19317022    rs976383    C    T    79.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DENND4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307015    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
9    19521062    rs151165131    A    G    868.64    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.043;DB;DP=49;Dels=0.0;FS=2.779;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.695;QD=17.73;ReadPosRankSum=0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    0/1:18,31:49:99:899,0,494
9    19528038    .    A    G    65.75    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;MQRankSum=-1.653;QD=4.38;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    0/1:10,5:15:95.75:96,0,293
9    19550308    rs4977555    A    T    1569.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1602,126,0
9    19573483    rs66707311    AACACACACACACACACACACACACAC    A    1593.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=654.6423;IndelType=D;MQ=49.23;MQ0=0;QD=49.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    1/1:21,9:32:33.10:1636,33,0
9    19573600    rs10964221    C    T    576.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:610,48,0
9    19576815    rs2247818    C    T    76.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.82;MQ0=0;QD=12.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    1/1:0,6:6:12:109,12,0
9    19576816    rs112884439    GGT    G    160.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=40.8532;IndelType=D;MQ=53.82;MQ0=0;QD=26.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    1/1:0,6:6:17.09:203,17,0
9    19576949    rs2383101    T    G    1559.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.56;MQ0=0;QD=30.0;SNPEFF_AMINO_ACID_CHANGE=R384;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_19576922_19577020;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1593,132,0
9    19619509    rs1885220    C    T    609.59    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=38;Dels=0.0;FS=3.378;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.365;QD=16.04;ReadPosRankSum=-0.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    0/1:18,20:38:99:640,0,527
9    19622268    rs4977308    T    C    418.91    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.834;QD=9.52;ReadPosRankSum=-0.303;SNPEFF_AMINO_ACID_CHANGE=P320;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_19622259_19622297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286344    GT:AD:DP:GQ:PL    0/1:23,21:44:99:449,0,689
9    20620596    rs2780835    C    T    735.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355930    GT:AD:DP:GQ:PL    1/1:0,23:24:63.17:768,63,0
9    20720599    rs4977898    A    C    547.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.008;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=16.12;ReadPosRankSum=1.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    0/1:17,17:34:99:578,0,480
9    20778631    rs7875153    A    G    130.01    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.586;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=7.65;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    0/1:11,5:17:99:160,0,401
9    20862515    rs4977780    A    C    956.38    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.162;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5493;MQ=59.63;MQ0=0;MQRankSum=1.599;QD=15.43;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    0/1:30,32:62:99:986,0,965
9    20866974    rs7875872    C    G    1076.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.74;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=T718S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_20866928_20867011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1110,84,0
9    20882117    rs7026225    T    C    482.90    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.638;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.084;QD=10.73;ReadPosRankSum=1.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    0/1:26,19:45:99:513,0,876
9    20923579    rs7044452    C    T    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    20947021    rs7867929    G    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
9    20948125    rs79310568    C    CTT    297.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=13.9069;IndelType=I;MQ=65.19;MQ0=0;QD=49.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:340,18,0
9    20953049    rs3206852    A    G    974.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=T1373A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_20952984_20953064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:1008,72,0
9    20978306    rs10811445    A    G    1276.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,36:36:96.30:1309,96,0
9    20978312    rs4977616    A    G    1322.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1355,111,0
9    20982328    rs10964782    T    G    1006.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1040,81,0
9    20982503    rs4304410    T    G    726.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:760,57,0
9    20988426    rs4977881    A    G    1249.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=K1668E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_20988331_20988428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1797;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338382    GT:AD:DP:GQ:PL    1/1:0,37:37:96.28:1283,96,0
9    20993461    rs4497056    T    G    113.51    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.731;QD=22.7;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513293    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:143,0,25
9    21007935    rs7041474    A    G    1180.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495827    GT:AD:DP:GQ:PL    1/1:0,33:33:90.28:1213,90,0
9    21008377    rs2275882    T    C    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495827    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
9    21026540    rs2275889    G    T    1951.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495827    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1985,144,0
9    21026800    rs2275890    G    A    1175.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495827    GT:AD:DP:GQ:PL    1/1:0,32:33:90.29:1208,90,0
9    21026893    rs4977908    C    G    222.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495827    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:256,18,0
9    21077716    rs1051922    G    A    783.34    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.017;DB;DP=58;Dels=0.0;FS=5.46;HRun=1;HaplotypeScore=0.8321;MQ=59.2;MQ0=0;MQRankSum=0.809;QD=13.51;ReadPosRankSum=-0.168;SNPEFF_AMINO_ACID_CHANGE=Y51;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_21077104_21077943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380232    GT:AD:DP:GQ:PL    0/1:32,26:58:99:813,0,946
9    21140902    .    A    G    114.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=57.44;MQ0=0;MQRankSum=-0.143;QD=10.44;ReadPosRankSum=1.408;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380229    GT:AD:DP:GQ:PL    0/1:6,5:11:99:145,0,215
9    21166791    rs8181185    A    C    132.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.36;MQ0=0;QD=33.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNA21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380225    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
9    21816528    rs7023329    A    G    106.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.36;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380172    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,141
9    21816573    rs7023680    G    A    172.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=12.34;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380172    GT:AD:DP:GQ:PL    0/1:8,6:14:99:203,0,286
9    21816646    rs7023474    A    G    448.35    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.063;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.819;QD=13.19;ReadPosRankSum=-0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380172    GT:AD:DP:GQ:PL    0/1:18,16:34:99:478,0,572
9    21838179    rs12378675    C    A    83.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=8.34;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460874    GT:AD:DP:GQ:PL    0/1:6,4:10:99:113,0,215
9    21968199    rs11515    C    G    812.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2967;MQ=49.64;MQ0=0;QD=23.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441769    GT:AD:DP:GQ:PL    1/1:1,33:34:72.21:845,72,0
9    22029445    rs10965215    G    A    5699.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9391;MQ=59.78;MQ0=0;QD=35.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404796    GT:AD:DP:GQ:PL    1/1:0,161:162:99:5699,415,0
9    22447655    rs558612    T    A    73.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=21;Dels=0.0;FS=2.757;HRun=0;HaplotypeScore=1.367;MQ=55.45;MQ0=0;MQRankSum=-0.495;QD=3.51;ReadPosRankSum=0.636;SNPEFF_AMINO_ACID_CHANGE=G197;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_22446840_22447731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRTA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325870    GT:AD:DP:GQ:PL    0/1:10,5:21:99:104,0,320
9    22451031    rs563802    G    A    491.92    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.85;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.71;MQ0=0;MQRankSum=0.617;QD=13.66;ReadPosRankSum=0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325870    GT:AD:DP:GQ:PL    0/1:16,20:36:99:522,0,401
9    22452002    rs62574786    G    A    237.31    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=21;Dels=0.0;FS=5.898;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.688;QD=11.3;ReadPosRankSum=0.326;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325870    GT:AD:DP:GQ:PL    0/1:13,8:21:99:267,0,379
9    22452041    rs111721498    GTT    G    222.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=12;HaplotypeScore=54.1433;IndelType=D;MQ=55.66;MQ0=0;QD=20.2;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325870    GT:AD:DP:GQ:PL    1/1:2,8:11:27.01:264,27,0
9    23701276    rs62539994    C    T    838.77    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.909;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.011;QD=17.85;ReadPosRankSum=-0.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423281    GT:AD:DP:GQ:PL    0/1:21,26:47:99:869,0,716
9    24545695    rs2772579    G    C    84.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IZUMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418122    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    24545957    rs2772578    G    C    430.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.11;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IZUMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418122    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:463,36,0
9    25677933    rs35110225    T    C    142.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.71;SNPEFF_AMINO_ACID_CHANGE=A129;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_25676396_25678856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUSC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358022    GT:AD:DP:GQ:PL    1/1:1,5:6:15.04:175,15,0
9    25677953    rs34498078    T    C    100.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=16.76;SNPEFF_AMINO_ACID_CHANGE=N123D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_25676396_25678856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUSC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358022    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:133,12,0
9    26906222    rs62544437    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520884    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
9    26916908    rs62544440    G    T    72.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521968    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
9    26919666    rs16910888    G    C    310.22    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=58.78;MQ0=0;MQRankSum=-0.041;QD=16.33;ReadPosRankSum=-2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397292    GT:AD:DP:GQ:PL    0/1:9,10:19:99:340,0,310
9    26925656    rs16910895    C    A    107.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=13.38;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397292    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,142
9    26926216    rs3737226    C    T    71.11    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=14.22;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397292    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:101,0,30
9    26934858    rs10738762    G    A    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397292    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
9    26934896    rs62544451    C    G    127.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=12.76;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397292    GT:AD:DP:GQ:PL    0/1:5,5:10:99:158,0,181
9    26935318    rs62544452    C    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397292    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,74
9    26962170    rs3739544    C    A    75.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.8;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380062    GT:AD:DP:GQ:PL    0/1:4,3:7:88.09:106,0,88
9    26978170    rs10812505    A    G    410.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.233;DB;DP=32;Dels=0.0;FS=1.412;HRun=3;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.138;QD=12.83;ReadPosRankSum=1.166;SNPEFF_AMINO_ACID_CHANGE=I17M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_26978126_26978261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000517866    GT:AD:DP:GQ:PL    0/1:16,16:32:99:441,0,528
9    26978259    rs11555693    A    G    481.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.204;DB;DP=34;Dels=0.0;FS=1.624;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.758;QD=14.15;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=K47R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_26978126_26978261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000517866    GT:AD:DP:GQ:PL    0/1:17,17:34:99:511,0,600
9    26988571    rs10967645    A    G    110.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=13.84;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517444    GT:AD:DP:GQ:PL    0/1:3,5:8:83.86:141,0,84
9    26988783    rs7865596    G    A    431.38    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.339;DB;DP=29;Dels=0.0;FS=10.017;HRun=3;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=-0.851;QD=14.88;ReadPosRankSum=1.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494236    GT:AD:DP:GQ:PL    0/1:14,15:29:99:461,0,499
9    26996170    rs7018585    G    C    158.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380062    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:191,15,0
9    27009305    rs56307252    C    T    56.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=9.36;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380062    GT:AD:DP:GQ:PL    0/1:2,4:6:60.56:86,0,61
9    27009344    rs62542669    C    A    82.14    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.53;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380062    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:112,0,27
9    27047158    rs191485912    G    A    144.77    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=18.1;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380062    GT:AD:DP:GQ:PL    0/1:3,5:8:93.68:175,0,94
9    27047241    rs62542704    A    T    462.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.484;QD=19.25;ReadPosRankSum=0.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380062    GT:AD:DP:GQ:PL    0/1:8,16:24:99:492,0,272
9    27047246    rs10812520    T    C    812.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380062    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:845,63,0
9    27062721    rs3429    C    T    728.35    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.011;DB;DP=47;Dels=0.0;FS=1.153;HRun=0;HaplotypeScore=0.6651;MQ=58.11;MQ0=0;MQRankSum=1.951;QD=15.5;ReadPosRankSum=1.567;SNPEFF_AMINO_ACID_CHANGE=T597I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_27062616_27062928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380062    GT:AD:DP:GQ:PL    0/1:22,25:47:99:758,0,696
9    27109313    rs72535318    T    TG    353.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.98;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=40.7168;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=0.286;QD=17.68;ReadPosRankSum=0.286;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406359    GT:AD:DP:GQ:PL    0/1:10,10:20:99:393,0,294
9    27168315    rs10511802    G    A    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346448    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    27168704    rs10967753    T    C    84.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346448    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    27172838    rs3739542    C    A    81.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=16.24;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346448    GT:AD:DP:GQ:PL    0/1:2,3:5:36.33:111,0,36
9    27173062    rs3824410    G    T    172.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346448    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
9    27173180    rs666478    C    T    348.50    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.697;DB;DP=29;Dels=0.0;FS=3.873;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.504;QD=12.02;ReadPosRankSum=-2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346448    GT:AD:DP:GQ:PL    0/1:16,13:29:99:378,0,515
9    27183463    rs682632    A    C    5058.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.88;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=Q156P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_27183457_27183608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000519080    GT:AD:DP:GQ:PL    1/1:0,152:152:99:5059,379,0
9    27190890    rs481294    C    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.73;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346448    GT:AD:DP:GQ:PL    0/1:3,3:6:70.37:70,0,101
9    27192330    rs2252883    G    A    73.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.29;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346448    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,109
9    27197673    rs606342    G    T    210.40    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=17.53;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346448    GT:AD:DP:GQ:PL    0/1:5,7:12:99:240,0,175
9    27202662    rs551519    C    T    112.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    0/1:2,4:6:61.57:142,0,62
9    27202870    rs639225    A    G    3566.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.873;MQ=59.63;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=S464;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_27202818_27202883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519080    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3567,271,0
9    27203134    rs638203    A    G    781.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519080    GT:AD:DP:GQ:PL    1/1:0,26:26:63.19:814,63,0
9    27204798    rs566490    G    A    346.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=17.35;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519080    GT:AD:DP:GQ:PL    0/1:8,12:20:99:377,0,267
9    27204802    rs593621    A    G    353.44    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.868;QD=16.07;ReadPosRankSum=-1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519080    GT:AD:DP:GQ:PL    0/1:9,13:22:99:383,0,313
9    27205021    rs542913    G    A    548.22    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5494;MQ=60.0;MQ0=0;MQRankSum=0.683;QD=15.23;ReadPosRankSum=-1.55;SNPEFF_AMINO_ACID_CHANGE=R627;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_27204909_27205060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519097    GT:AD:DP:GQ:PL    0/1:16,20:36:99:578,0,409
9    27212966    rs1111782    T    C    124.48    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=13.83;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    0/1:4,5:9:99:154,0,140
9    27213580    rs3737188    T    C    269.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.014;DB;DP=35;Dels=0.0;FS=5.073;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.185;QD=7.71;ReadPosRankSum=-0.219;SNPEFF_AMINO_ACID_CHANGE=Y844;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_27213482_27213595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519097    GT:AD:DP:GQ:PL    0/1:21,14:35:99:300,0,543
9    27217516    rs5897224    CTGTT    C    231.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=42.1431;IndelType=D;MQ=44.1;MQ0=0;QD=46.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:273,15,0
9    27217783    rs111512563    A    AT    428.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.574;DB;DP=31;FS=0.0;HRun=8;HaplotypeScore=177.928;IndelType=I;MQ=59.56;MQ0=0;MQRankSum=1.201;QD=13.81;ReadPosRankSum=0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    1/1:20,11:31:26.53:470,27,0
9    27217791    rs1923331    T    TC    401.53    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.062;DB;DP=27;FS=2.192;HRun=3;HaplotypeScore=180.874;IndelType=I;MQ=60.35;MQ0=0;MQRankSum=-0.571;QD=14.87;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    0/1:13,12:27:17.24:441,0,17
9    27217810    rs2275083    C    T    172.62    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=11.51;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    0/1:8,7:15:99:203,0,251
9    27217822    rs681754    G    A    380.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:414,30,0
9    27217851    rs681707    G    C    288.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
9    27218715    rs10121367    C    A    447.71    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.591;DB;DP=26;Dels=0.0;FS=1.974;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.077;QD=17.22;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    0/1:12,14:26:99:478,0,379
9    27218726    rs667250    C    T    849.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    1/1:0,25:25:72.19:883,72,0
9    27218960    rs12337434    A    T    63.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.406;QD=10.55;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    0/1:3,3:6:93.27:93,0,96
9    27220066    rs2273719    G    A    719.25    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.803;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.558;QD=12.62;ReadPosRankSum=-0.066;SNPEFF_AMINO_ACID_CHANGE=G1041;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_27220047_27220143;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    0/1:29,28:57:99:749,0,881
9    27228022    rs2273717    A    G    158.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
9    27229141    rs2273715    T    C    535.23    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=38;Dels=0.0;FS=9.811;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.147;QD=14.09;ReadPosRankSum=1.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380036    GT:AD:DP:GQ:PL    0/1:21,17:38:99:565,0,683
9    27284708    rs1057524    T    A    773.41    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9463;MQ=60.0;MQ0=0;MQRankSum=-1.899;QD=13.57;ReadPosRankSum=0.537;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380032    GT:AD:DP:GQ:PL    0/1:31,26:57:99:803,0,877
9    27289536    rs3739538    A    G    34.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.74;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:65,0,73
9    27289545    rs3739537    G    T    31.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.97;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    0/1:2,2:4:61.89:62,0,69
9    27289812    rs1980661    T    C    272.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-1.386;QD=12.97;ReadPosRankSum=-0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    0/1:12,9:21:99:302,0,391
9    27289832    rs1980660    G    T    651.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:684,51,0
9    27290984    rs2383724    T    C    1072.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3919;MQ=56.27;MQ0=0;QD=28.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    1/1:1,36:37:84.26:1105,84,0
9    27291133    rs57396932    G    T    174.70    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9965;MQ=45.77;MQ0=0;MQRankSum=-1.531;QD=15.88;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    0/1:3,8:11:86.34:205,0,86
9    27291140    rs59009836    C    CATTT    576.83    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=79.0895;IndelType=I;MQ=44.1;MQ0=0;MQRankSum=-0.898;QD=57.68;ReadPosRankSum=1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    0/1:3,7:10:68.76:616,0,69
9    27291195    rs3739536    T    C    52.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=17.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:85,9,0
9    27292234    rs10757650    G    C    137.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484994    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:170,12,0
9    27292279    rs3739534    G    A    176.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.63;ReadPosRankSum=-0.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484994    GT:AD:DP:GQ:PL    0/1:7,7:14:99:207,0,232
9    27294511    rs10733415    A    T    105.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:138,12,0
9    27296595    rs7044345    C    G    1372.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1406,102,0
9    27296705    rs3824406    A    G    687.67    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.967;DB;DP=66;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.5784;MQ=59.72;MQ0=0;MQRankSum=0.96;QD=10.42;ReadPosRankSum=-0.086;SNPEFF_AMINO_ACID_CHANGE=D36;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_27296611_27296736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    0/1:38,28:66:99:718,0,1131
9    27296943    rs3832606    TAC    T    347.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DB;DP=18;FS=10.843;HRun=0;HaplotypeScore=61.5982;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=-0.706;QD=19.3;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380031    GT:AD:DP:GQ:PL    0/1:9,9:18:99:386,0,483
9    27359378    rs13301919    G    T    98.40    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=54.65;MQ0=0;MQRankSum=0.067;QD=10.93;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262244    GT:AD:DP:GQ:PL    0/1:2,7:9:24.27:128,0,24
9    27359380    rs55840607    G    T    95.87    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=54.65;MQ0=0;MQRankSum=1.179;QD=10.65;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262244    GT:AD:DP:GQ:PL    0/1:2,7:9:21.93:126,0,22
9    27359426    rs75441589    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262244    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
9    27359434    rs78295981    G    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262244    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
9    27378301    rs1330920    A    G    547.47    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.251;DB;DP=52;Dels=0.0;FS=1.24;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.083;QD=10.53;ReadPosRankSum=1.009;SNPEFF_AMINO_ACID_CHANGE=*145R;SNPEFF_CODON_CHANGE=Tga/Cga;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_9_27374215_27378942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf35;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000443737    GT:AD:DP:GQ:PL    0/1:30,22:52:99:577,0,932
9    27455095    rs12379154    G    C    1288.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262244    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1321,99,0
9    27455585    rs10757661    G    A    1952.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_27455131_27455746;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262244    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1986,150,0
9    27524731    rs700785    A    G    6336.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.87;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=K133E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_27524312_27524959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276943    GT:AD:DP:GQ:PL    1/1:0,179:179:99:6337,473,0
9    27525022    rs700784    A    T    359.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276943    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:393,30,0
9    27548433    rs71893002    GAAA    G    137.81    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=26;FS=0.0;HRun=26;HaplotypeScore=225.7055;IndelType=D;MQ=44.6;MQ0=0;MQRankSum=1.437;QD=5.3;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380003    GT:AD:DP:GQ:PL    0/1:16,7:26:48.81:177,0,49
9    27558238    rs10812614    A    T    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379995    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:73,6,0
9    27561465    rs5897243    A    ATGT    434.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=21.1256;IndelType=I;MQ=47.82;MQ0=0;QD=54.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379995    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:476,21,0
9    27562352    rs2589050    T    C    1314.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379995    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1348,99,0
9    28148300    rs28516035    T    C    1552.18    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.576;DB;DP=124;Dels=0.0;FS=0.856;HRun=0;HaplotypeScore=3.8268;MQ=58.38;MQ0=1;MQRankSum=-0.104;QD=12.52;ReadPosRankSum=-0.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINGO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379992    GT:AD:DP:GQ:PL    0/1:70,54:124:99:1582,0,2172
9    28148700    rs1965863    C    T    1343.78    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=3.932;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9497;MQ=54.5;MQ0=0;MQRankSum=-0.931;QD=13.3;ReadPosRankSum=-0.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINGO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379992    GT:AD:DP:GQ:PL    0/1:56,45:101:99:1374,0,1511
9    28149263    .    G    A    1030.01    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=0.565;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2657;MQ=55.67;MQ0=0;MQRankSum=-1.118;QD=21.46;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINGO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379992    GT:AD:DP:GQ:PL    0/1:17,31:48:99:1060,0,506
9    28889060    rs7043805    C    G    122.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR873;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401120    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
9    30689856    rs12378799    C    T    2582.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.22;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9729;MQ=59.47;MQ0=0;MQRankSum=1.683;QD=36.37;ReadPosRankSum=-0.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RBMXP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434705    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2615,162,0
9    30770996    rs2791600    T    C    200.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.103;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.998;QD=12.56;ReadPosRankSum=-1.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL590726.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408184    GT:AD:DP:GQ:PL    0/1:8,8:16:99:231,0,250
9    30771274    rs78272243    T    A    1067.04    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.705;DB;DP=61;Dels=0.0;FS=8.052;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.332;QD=17.49;ReadPosRankSum=-0.303;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL590726.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390176    GT:AD:DP:GQ:PL    0/1:24,37:61:99:1097,0,683
9    30774206    rs300542    A    T    388.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.077;DB;DP=26;Dels=0.0;FS=1.799;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.615;QD=14.93;ReadPosRankSum=-0.513;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-441F11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452970    GT:AD:DP:GQ:PL    0/1:13,13:26:99:418,0,435
9    30774539    rs300543    C    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL590726.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390176    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:70,0,65
9    32418237    rs2026739    G    T    748.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:781,57,0
9    32419461    rs7026133    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    32424353    rs3814521    G    C    211.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
9    32427592    rs72561746    C    G    96.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=10.77;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,176
9    32427600    rs2375965    A    G    291.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:325,24,0
9    32429237    rs41314201    C    A    115.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.08;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:145,0,28
9    32429575    rs75178380    T    G    208.20    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=18.93;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    0/1:4,7:11:99:238,0,133
9    32431931    rs10970975    A    G    256.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=58.45;MQ0=0;MQRankSum=-0.766;QD=17.09;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    0/1:6,9:15:99:286,0,188
9    32433965    rs7855113    T    C    108.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:141,12,0
9    32436014    rs7022554    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_AMINO_ACID_CHANGE=Q740;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_32436002_32436140;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432017    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    32440404    rs45454698    G    C    443.60    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.628;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.33;MQ0=0;MQRankSum=0.377;QD=15.84;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432017    GT:AD:DP:GQ:PL    0/1:11,17:28:99:474,0,323
9    32448745    rs10813817    T    C    100.02    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=8.33;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309951    GT:AD:DP:GQ:PL    0/1:7,5:12:99:130,0,245
9    32450187    rs12985    T    C    262.64    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.349;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=56.96;MQ0=0;MQRankSum=1.268;QD=8.47;ReadPosRankSum=-0.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379921    GT:AD:DP:GQ:PL    0/1:17,14:31:99:293,0,394
9    32459450    rs3205166    T    G    827.56    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.58;MQ0=0;MQRankSum=1.055;QD=17.99;ReadPosRankSum=-1.15;SNPEFF_AMINO_ACID_CHANGE=V597;SNPEFF_CODON_CHANGE=gtA/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_32459369_32459512;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379868    GT:AD:DP:GQ:PL    0/1:17,29:46:99:858,0,489
9    32466184    rs2274864    G    A    144.51    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.374;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=6.88;ReadPosRankSum=-0.117;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545044    GT:AD:DP:GQ:PL    0/1:15,6:21:99:175,0,556
9    32466190    rs56377445    T    C    542.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.765;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=22.59;ReadPosRankSum=0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545044    GT:AD:DP:GQ:PL    0/1:8,16:24:99:572,0,258
9    32466277    rs45589431    C    T    981.28    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.706;DB;DP=53;Dels=0.0;FS=3.91;HRun=0;HaplotypeScore=1.9452;MQ=60.0;MQ0=0;MQRankSum=-0.966;QD=18.51;ReadPosRankSum=0.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545044    GT:AD:DP:GQ:PL    0/1:22,31:53:99:1011,0,573
9    32466462    rs45460592    G    T    52.66    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=2.73;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.546;QD=5.27;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379868    GT:AD:DP:GQ:PL    0/1:7,3:10:82.66:83,0,259
9    32473088    rs13295938    T    C    510.41    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.975;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.448;QD=19.63;ReadPosRankSum=0.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379868    GT:AD:DP:GQ:PL    0/1:10,16:26:99:540,0,302
9    32480251    rs17217280    A    T    637.06    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.587;DB;DP=55;Dels=0.0;FS=2.334;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.11;QD=11.58;ReadPosRankSum=-1.519;SNPEFF_AMINO_ACID_CHANGE=D377E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_32480217_32480352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379868    GT:AD:DP:GQ:PL    0/1:31,24:55:99:667,0,903
9    32481500    rs71504272    T    TA    32.82    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DB;DP=20;FS=0.0;HRun=16;HaplotypeScore=96.6683;IndelType=I;MQ=58.84;MQ0=0;MQRankSum=0.061;QD=1.64;ReadPosRankSum=1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542960    GT:AD:DP:GQ:PL    0/1:13,5:20:71.85:72,0,103
9    32485288    rs71302893    C    CA    623.88    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.366;DB;DP=61;FS=11.023;HRun=10;HaplotypeScore=148.4079;IndelType=I;MQ=59.42;MQ0=0;MQRankSum=-0.287;QD=10.23;ReadPosRankSum=1.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542960    GT:AD:DP:GQ:PL    0/1:35,25:61:99:663,0,361
9    32488237    rs10813825    G    C    459.41    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=30;Dels=0.0;FS=7.558;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.145;QD=15.31;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379868    GT:AD:DP:GQ:PL    0/1:16,14:30:99:489,0,404
9    32491240    rs6476363    C    T    2542.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;QD=29.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379868    GT:AD:DP:GQ:PL    1/1:0,85:87:99:2575,196,0
9    32492352    rs17289927    T    C    313.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=21;Dels=0.0;FS=2.473;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=14.94;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379868    GT:AD:DP:GQ:PL    0/1:9,12:21:99:344,0,267
9    32525969    rs2777729    C    A    34.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.74;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379868    GT:AD:DP:GQ:PL    0/1:4,2:6:64.41:64,0,141
9    32542204    rs10971019    A    G    973.01    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.533;DB;DP=65;Dels=0.0;FS=5.21;HRun=1;HaplotypeScore=0.9332;MQ=58.93;MQ0=0;MQRankSum=0.072;QD=14.97;ReadPosRankSum=0.796;SNPEFF_AMINO_ACID_CHANGE=S708;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_32540824_32544324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOPORS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379858    GT:AD:DP:GQ:PL    0/1:35,30:65:99:1003,0,1140
9    32559114    rs10813835    C    T    83.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350021    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
9    32630472    rs10758145    T    C    1989.34    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=2.08;DB;DP=129;Dels=0.0;FS=4.175;HRun=0;HaplotypeScore=2.7487;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=15.42;ReadPosRankSum=0.997;SNPEFF_AMINO_ACID_CHANGE=K1702;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_32629452_32635667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242310    GT:AD:DP:GQ:PL    0/1:63,66:129:99:2019,0,1957
9    32631966    rs45559233    G    A    1337.27    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.466;DB;DP=110;Dels=0.0;FS=4.825;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.933;QD=12.16;ReadPosRankSum=0.786;SNPEFF_AMINO_ACID_CHANGE=V1204;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_32629452_32635667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242310    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1367,0,1919
9    32634467    rs17219559    T    C    1393.23    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.582;DB;DP=106;Dels=0.0;FS=5.006;HRun=0;HaplotypeScore=0.9665;MQ=59.78;MQ0=0;MQRankSum=-0.72;QD=13.14;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=M371V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_32629452_32635667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242310    GT:AD:DP:GQ:PL    0/1:59,47:106:99:1423,0,1788
9    32708722    rs10813858    G    A    276.43    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.294;QD=23.04;ReadPosRankSum=-2.034;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157884.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408523    GT:AD:DP:GQ:PL    0/1:3,9:12:89.83:306,0,90
9    32708740    rs67414868    C    CA    120    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=19;FS=0.0;HRun=15;HaplotypeScore=123.8581;IndelType=I;MQ=55.2;MQ0=0;MQRankSum=-1.268;QD=6.32;ReadPosRankSum=-0.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157884.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408523    GT:AD:DP:GQ:PL    0/1:8,7:19:15.83:159,0,16
9    32709004    rs10217660    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157884.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408523    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    32764309    rs73470497    G    A    110.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=15.84;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157884.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408769    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,104
9    32973709    rs34659850    CA    C    98.60    QDFilter2    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=77;FS=10.77;HRun=18;HaplotypeScore=584.121;IndelType=D;MQ=48.06;MQ0=0;MQRankSum=2.306;QD=1.26;ReadPosRankSum=3.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309615    GT:AD:DP:GQ:PL    0/1:34,28:77:68.82:138,0,69
9    32974372    rs4878522    C    T    802.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.89;MQ0=0;QD=38.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309615    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:836,63,0
9    32974570    rs77633526    G    GA    1299.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=9;HaplotypeScore=125.3236;IndelType=I;MQ=60.17;MQ0=0;QD=27.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309615    GT:AD:DP:GQ:PL    1/1:6,42:48:99:1342,123,0
9    32986030    .    TA    T    627.50    PASS    AB=0.948;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.815;DP=91;FS=52.941;HRun=10;HaplotypeScore=768.2893;IndelType=D;MQ=46.47;MQ0=0;MQRankSum=1.445;QD=6.82;ReadPosRankSum=6.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460945    GT:AD:DP:GQ:PL    0/1:86,5:91:99:667,0,113
9    32986041    .    C    CA    1227.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.358;DP=90;FS=0.0;HRun=11;HaplotypeScore=857.3541;IndelType=I;MQ=43.25;MQ0=0;MQRankSum=-0.014;QD=13.49;ReadPosRankSum=-1.329;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460945    GT:AD:DP:GQ:PL    1/1:81,10:90:99:1269,143,0
9    32986041    rs10123944    C    A    141.65    HaplotypeScoreFilter13;QDFilter2    AB=0.193;AC=1;AF=0.50;AN=2;BaseQRankSum=2.381;DB;DP=83;Dels=0.03;FS=29.908;HRun=11;HaplotypeScore=27.365;MQ=43.2;MQ0=0;MQRankSum=3.481;QD=1.65;ReadPosRankSum=2.252;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460945    GT:AD:DP:GQ:PL    0/1:16,67:83:99:172,0,279
9    33244945    rs1890089    C    T    245.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493917    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:279,21,0
9    33264540    rs1071545    C    G    255.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=G45R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33264222_33264759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BAG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472232    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
9    33270479    rs844239    A    G    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223500    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
9    33270748    rs831271    G    T    1262.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223500    GT:AD:DP:GQ:PL    1/1:0,36:37:96.32:1296,96,0
9    33290532    rs830576    A    G    470.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318524    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:504,36,0
9    33290688    rs4879682    G    C    368.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263220    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:402,30,0
9    33318588    rs3849903    A    G    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263220    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
9    33344252    rs642157    T    A    989.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263220    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1023,78,0
9    33352826    rs34707657    C    CAAA    437.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=3;HaplotypeScore=21.6865;IndelType=I;MQ=51.02;MQ0=0;QD=62.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318524    GT:AD:DP:GQ:PL    1/1:0,6:7:21.07:479,21,0
9    33354070    rs145934546    TTTTTA    T    409.75    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=151.1426;IndelType=D;MQ=58.46;MQ0=0;MQRankSum=-0.355;QD=17.07;ReadPosRankSum=-0.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466971    GT:AD:DP:GQ:PL    0/1:16,8:24:99:449,0,1238
9    33385287    rs74557595    T    C    182.87    QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.443;DB;DP=148;Dels=0.0;FS=58.082;HRun=0;HaplotypeScore=2.377;MQ=53.81;MQ0=3;MQRankSum=-7.55;QD=1.24;ReadPosRankSum=2.251;SNPEFF_AMINO_ACID_CHANGE=N157D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385247_33385288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439678    GT:AD:DP:GQ:PL    0/1:118,28:148:99:213,0,3882
9    33385353    .    C    T    712.60    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=5.395;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=48.86;MQ0=0;MQRankSum=-7.525;QD=9.02;ReadPosRankSum=1.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379503    GT:AD:DP:GQ:PL    0/1:44,35:79:99:743,0,1204
9    33385358    rs117805411    C    G    656.31    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.71;DB;DP=70;Dels=0.0;FS=1.861;HRun=0;HaplotypeScore=0.8667;MQ=48.86;MQ0=0;MQRankSum=-6.627;QD=9.38;ReadPosRankSum=2.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379503    GT:AD:DP:GQ:PL    0/1:40,30:70:99:686,0,1220
9    33385364    rs115119744    A    T    649.13    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DB;DP=64;Dels=0.0;FS=1.886;HRun=0;HaplotypeScore=0.8667;MQ=49.22;MQ0=0;MQRankSum=-6.805;QD=10.14;ReadPosRankSum=2.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379503    GT:AD:DP:GQ:PL    0/1:35,29:64:99:679,0,1161
9    33385439    rs590111    A    G    593.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.28;MQ0=0;QD=32.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379503    GT:AD:DP:GQ:PL    1/1:0,18:18:51.12:626,51,0
9    33385667    rs79779983    A    G    220.85    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=109;Dels=0.0;FS=6.262;HRun=0;HaplotypeScore=3.4035;MQ=54.86;MQ0=1;MQRankSum=-6.16;QD=2.03;ReadPosRankSum=-1.322;SNPEFF_AMINO_ACID_CHANGE=L110;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385456_33385864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541274    GT:AD:DP:GQ:PL    0/1:90,18:109:99:251,0,2754
9    33385698    rs145516206    A    G    89.34    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.255;DB;DP=110;Dels=0.0;FS=1.431;HRun=2;HaplotypeScore=2.6498;MQ=55.09;MQ0=2;MQRankSum=-5.855;QD=0.81;ReadPosRankSum=-0.331;SNPEFF_AMINO_ACID_CHANGE=L139P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385647_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439678    GT:AD:DP:GQ:PL    0/1:94,16:110:99:119,0,2674
9    33385709    rs116294914    C    T    101.29    QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=1.9;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.06;MQ0=1;MQRankSum=-6.234;QD=0.95;ReadPosRankSum=-0.207;SNPEFF_AMINO_ACID_CHANGE=V96I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385456_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541274    GT:AD:DP:GQ:PL    0/1:89,18:107:99:131,0,2493
9    33385712    rs115575789    G    A    102.41    QDFilter2    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.944;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.3;MQ0=1;MQRankSum=-6.162;QD=0.96;ReadPosRankSum=0.268;SNPEFF_AMINO_ACID_CHANGE=P95S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385456_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541274    GT:AD:DP:GQ:PL    0/1:91,16:107:99:132,0,2781
9    33385740    .    A    T    48.65    QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5628;MQ=54.95;MQ0=1;MQRankSum=-6.048;QD=0.45;ReadPosRankSum=-0.994;SNPEFF_AMINO_ACID_CHANGE=L125H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385647_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439678    GT:AD:DP:GQ:PL    0/1:93,16:109:78.65:79,0,2887
9    33385784    rs114937176    C    G    268.17    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DB;DP=109;Dels=0.0;FS=5.841;HRun=0;HaplotypeScore=1.7338;MQ=53.31;MQ0=4;MQRankSum=-7.101;QD=2.46;ReadPosRankSum=-0.495;SNPEFF_AMINO_ACID_CHANGE=G71R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385456_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541274    GT:AD:DP:GQ:PL    0/1:83,26:109:99:298,0,2575
9    33385786    rs76908057    C    G    278.28    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.399;DB;DP=113;Dels=0.0;FS=5.949;HRun=0;HaplotypeScore=2.7127;MQ=53.56;MQ0=4;MQRankSum=-7.134;QD=2.46;ReadPosRankSum=0.389;SNPEFF_AMINO_ACID_CHANGE=E110Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385647_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439678    GT:AD:DP:GQ:PL    0/1:87,26:113:99:308,0,2607
9    33385815    rs62542745    T    C    36.12    QDFilter2    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.953;DB;DP=114;Dels=0.0;FS=1.281;HRun=2;HaplotypeScore=1.8055;MQ=51.07;MQ0=6;MQRankSum=-3.77;QD=0.32;ReadPosRankSum=0.939;SNPEFF_AMINO_ACID_CHANGE=Q100R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385647_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439678    GT:AD:DP:GQ:PL    0/1:96,17:114:66.11:66,0,2922
9    33385828    rs73478963    C    T    239.01    PASS    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=3.175;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.34;MQ0=6;MQRankSum=-4.692;QD=2.19;ReadPosRankSum=-0.754;SNPEFF_AMINO_ACID_CHANGE=A124T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385563_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379503    GT:AD:DP:GQ:PL    0/1:87,22:109:99:269,0,2060
9    33385852    .    C    T    187.24    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=3.363;DP=92;Dels=0.0;FS=1.341;HRun=0;HaplotypeScore=2.101;MQ=48.16;MQ0=8;MQRankSum=-4.457;QD=2.04;ReadPosRankSum=0.495;SNPEFF_AMINO_ACID_CHANGE=G116R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385563_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379503    GT:AD:DP:GQ:PL    0/1:72,19:92:99:217,0,1611
9    33385863    rs62542746    G    T    499.36    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.723;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.101;MQ=47.81;MQ0=11;MQRankSum=-4.865;QD=6.16;ReadPosRankSum=2.224;SNPEFF_AMINO_ACID_CHANGE=S44R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33385456_33385864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541274    GT:AD:DP:GQ:PL    0/1:47,34:81:99:529,0,1191
9    33385964    rs73645274    G    A    34.58    QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=54.72;MQ0=0;MQRankSum=-1.558;QD=1.12;ReadPosRankSum=-0.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:26,5:31:64.57:65,0,804
9    33386023    rs78769355    C    T    63.12    QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6228;MQ=54.11;MQ0=0;MQRankSum=-3.392;QD=1.71;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:31,6:37:93.11:93,0,1024
9    33386053    rs76169275    A    G    31.59    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=55;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=53.64;MQ0=0;MQRankSum=-4.107;QD=0.57;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:47,8:55:61.58:62,0,1204
9    33386064    rs115412820    C    G    176.48    PASS    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=52.96;MQ0=0;MQRankSum=-5.122;QD=2.6;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:55,13:68:99:206,0,1506
9    33386144    rs76209395    G    A    338.46    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=4.053;DB;DP=115;Dels=0.0;FS=33.365;HRun=1;HaplotypeScore=4.4144;MQ=53.96;MQ0=0;MQRankSum=-7.463;QD=2.94;ReadPosRankSum=-0.405;SNPEFF_AMINO_ACID_CHANGE=V151;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386075_33386193;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379506    GT:AD:DP:GQ:PL    0/1:90,25:115:99:368,0,2483
9    33386146    rs76608797    C    A    306.68    PASS    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=5.133;DB;DP=118;Dels=0.0;FS=23.694;HRun=1;HaplotypeScore=4.4144;MQ=53.88;MQ0=0;MQRankSum=-7.121;QD=2.6;ReadPosRankSum=-0.281;SNPEFF_AMINO_ACID_CHANGE=V151F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386075_33386193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379506    GT:AD:DP:GQ:PL    0/1:93,24:118:99:337,0,2724
9    33386167    rs79172651    G    C    694.12    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=2.848;DB;DP=127;Dels=0.0;FS=4.025;HRun=0;HaplotypeScore=4.5512;MQ=52.86;MQ0=1;MQRankSum=-8.124;QD=5.47;ReadPosRankSum=-0.188;SNPEFF_AMINO_ACID_CHANGE=Q13E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386075_33386193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447660    GT:AD:DP:GQ:PL    0/1:92,35:127:99:724,0,2819
9    33386211    rs80148578    G    A    883.09    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.377;DB;DP=128;Dels=0.0;FS=2.804;HRun=0;HaplotypeScore=1.4725;MQ=52.07;MQ0=1;MQRankSum=-8.103;QD=6.9;ReadPosRankSum=2.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:84,43:128:99:913,0,2435
9    33386226    rs78244036    T    C    1068.82    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=2.065;DB;DP=129;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.44;MQ0=1;MQRankSum=-7.463;QD=8.29;ReadPosRankSum=0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:80,49:129:99:1099,0,2236
9    33386243    rs76705820    C    T    1093.96    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=4.921;DB;DP=124;Dels=0.0;FS=1.733;HRun=0;HaplotypeScore=6.0749;MQ=49.27;MQ0=1;MQRankSum=-5.799;QD=8.82;ReadPosRankSum=-1.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:76,48:124:99:1124,0,1828
9    33386284    rs73478964    T    G    868.69    HaplotypeScoreFilter13    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=2.168;DB;DP=83;Dels=0.0;FS=6.041;HRun=0;HaplotypeScore=13.3443;MQ=48.86;MQ0=0;MQRankSum=-6.232;QD=10.47;ReadPosRankSum=1.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:43,35:83:99:899,0,1380
9    33386395    rs2484931    T    C    1421.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.27;MQ0=0;QD=27.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1454,117,0
9    33386469    rs78695486    C    T    42.78    QDFilter2    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=1.071;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7037;MQ=47.32;MQ0=8;MQRankSum=-7.683;QD=0.34;ReadPosRankSum=-1.169;SNPEFF_AMINO_ACID_CHANGE=P112;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386402_33386539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379506    GT:AD:DP:GQ:PL    0/1:89,35:125:72.77:73,0,2777
9    33386510    rs77962308    C    T    211.83    QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.465;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=49.29;MQ0=7;MQRankSum=-6.526;QD=1.38;ReadPosRankSum=0.894;SNPEFF_AMINO_ACID_CHANGE=A100T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386402_33386539;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:113,40:154:99:242,0,3595
9    33386511    rs72707424    A    G    235.65    QDFilter2    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.425;DB;DP=151;Dels=0.0;FS=1.012;HRun=0;HaplotypeScore=1.4679;MQ=49.49;MQ0=7;MQRankSum=-6.746;QD=1.56;ReadPosRankSum=1.259;SNPEFF_AMINO_ACID_CHANGE=F35;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386402_33386539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379503    GT:AD:DP:GQ:PL    0/1:113,38:151:99:266,0,3562
9    33386526    rs79202054    G    A    456.41    PASS    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=4.304;DB;DP=158;Dels=0.0;FS=0.904;HRun=0;HaplotypeScore=0.0;MQ=46.96;MQ0=11;MQRankSum=-6.318;QD=2.89;ReadPosRankSum=1.016;SNPEFF_AMINO_ACID_CHANGE=N2;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386402_33386539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439678    GT:AD:DP:GQ:PL    0/1:113,45:158:99:486,0,3179
9    33386641    rs62542747    C    T    132.45    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=4.436;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.44;MQ0=2;MQRankSum=-4.689;QD=2.1;ReadPosRankSum=2.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:43,20:63:99:162,0,1236
9    33386713    rs4008674    C    T    37.55    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=24;Dels=0.0;FS=5.348;HRun=1;HaplotypeScore=5.5994;MQ=48.95;MQ0=0;MQRankSum=-3.1;QD=1.56;ReadPosRankSum=-1.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:18,6:24:67.54:68,0,635
9    33386807    rs4008676    A    G    61.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7853;MQ=40.86;MQ0=3;MQRankSum=-2.843;QD=4.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:6,9:15:91.90:92,0,192
9    33386846    rs78416008    C    T    31.81    QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.157;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=43.49;MQ0=1;MQRankSum=-2.429;QD=1.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:18,5:23:61.81:62,0,565
9    33386882    rs79906575    C    G    61.81    QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.9248;MQ=48.6;MQ0=0;MQRankSum=-3.882;QD=1.26;ReadPosRankSum=0.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:41,8:49:91.81:92,0,1378
9    33386887    rs4008677    A    G    267.33    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.19;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9248;MQ=48.41;MQ0=0;MQRankSum=-5.56;QD=5.14;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:35,17:52:99:297,0,1256
9    33386900    rs77039398    C    T    113.16    HaplotypeScoreFilter13;QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.585;DB;DP=76;Dels=0.0;FS=2.374;HRun=0;HaplotypeScore=13.4573;MQ=47.07;MQ0=1;MQRankSum=-4.909;QD=1.49;ReadPosRankSum=-0.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:58,17:76:99:143,0,1869
9    33386901    .    G    A    124.11    HaplotypeScoreFilter13;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=3.153;DP=80;Dels=0.0;FS=21.806;HRun=0;HaplotypeScore=14.4556;MQ=47.19;MQ0=1;MQRankSum=-3.312;QD=1.55;ReadPosRankSum=-2.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:67,13:80:99:154,0,1770
9    33386940    rs79260234    G    A    195.84    QDFilter2;SnpCluster    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=4.046;DB;DP=161;Dels=0.0;FS=19.205;HRun=0;HaplotypeScore=0.734;MQ=46.74;MQ0=3;MQRankSum=-7.428;QD=1.22;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:131,30:161:99:226,0,3281
9    33386944    rs148102986    C    T    120.38    QDFilter2;SnpCluster    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=3.889;DB;DP=162;Dels=0.0;FS=13.825;HRun=0;HaplotypeScore=2.3204;MQ=46.53;MQ0=3;MQRankSum=-7.288;QD=0.74;ReadPosRankSum=-0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:132,30:162:99:150,0,3922
9    33386947    rs139027280    C    T    148.20    QDFilter2;SnpCluster    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.032;DB;DP=164;Dels=0.0;FS=11.427;HRun=0;HaplotypeScore=2.3204;MQ=46.32;MQ0=3;MQRankSum=-7.103;QD=0.9;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:132,32:164:99:178,0,3961
9    33386951    rs79622534    G    C    128.10    QDFilter2;SnpCluster    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=2.346;DB;DP=172;Dels=0.0;FS=2.266;HRun=2;HaplotypeScore=2.3204;MQ=46.56;MQ0=3;MQRankSum=-7.272;QD=0.74;ReadPosRankSum=-1.828;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:136,35:172:99:158,0,4064
9    33386989    rs77244521    C    G    742.35    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=202;Dels=0.0;FS=5.962;HRun=1;HaplotypeScore=3.1524;MQ=47.48;MQ0=6;MQRankSum=-6.947;QD=3.67;ReadPosRankSum=-2.058;SNPEFF_AMINO_ACID_CHANGE=V25;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386967_33387090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377425    GT:AD:DP:GQ:PL    0/1:154,48:202:99:772,0,4409
9    33387004    rs76863051    T    C    768.70    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=3.614;DB;DP=189;Dels=0.0;FS=4.652;HRun=2;HaplotypeScore=0.5784;MQ=48.09;MQ0=5;MQRankSum=-6.719;QD=4.07;ReadPosRankSum=2.17;SNPEFF_AMINO_ACID_CHANGE=G20;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386967_33387090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377425    GT:AD:DP:GQ:PL    0/1:141,48:189:99:799,0,4344
9    33387047    rs4008658    T    G    1087.29    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.231;DB;DP=155;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9172;MQ=48.37;MQ0=4;MQRankSum=-8.623;QD=7.01;ReadPosRankSum=-0.32;SNPEFF_AMINO_ACID_CHANGE=K62T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386967_33387090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379506    GT:AD:DP:GQ:PL    0/1:83,72:155:99:1117,0,2734
9    33387073    rs73645276    G    A    619.99    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=123;Dels=0.0;FS=10.098;HRun=0;HaplotypeScore=1.9075;MQ=45.84;MQ0=5;MQRankSum=-6.304;QD=5.04;ReadPosRankSum=-0.205;SNPEFF_AMINO_ACID_CHANGE=S53;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33386967_33387090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379506    GT:AD:DP:GQ:PL    0/1:72,51:123:99:650,0,2165
9    33387207    rs62542748    C    G    143.25    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.364;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9907;MQ=42.74;MQ0=0;MQRankSum=-2.91;QD=6.51;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:11,10:22:99:173,0,240
9    33387216    rs62542749    G    T    141.91    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=42.75;MQ0=0;MQRankSum=-3.176;QD=8.35;ReadPosRankSum=0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:7,10:17:99:172,0,208
9    33391393    rs62544565    T    A    92.44    MQFilter40;SnpCluster    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=29.81;MQ0=0;MQRankSum=-0.365;QD=8.4;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:4,6:11:94.90:122,0,95
9    33391398    .    T    G    43.22    MQFilter40;SnpCluster    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=29.81;MQ0=0;MQRankSum=0.296;QD=3.93;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:8,3:11:73.21:73,0,160
9    33391401    rs62544566    C    T    88.82    MQFilter40;SnpCluster    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=33.86;MQ0=0;MQRankSum=-0.851;QD=8.07;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:6,5:11:99:119,0,140
9    33391417    rs62544567    G    A    131.73    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.329;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9941;MQ=34.49;MQ0=0;MQRankSum=-2.329;QD=7.32;ReadPosRankSum=-1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:9,9:18:99:162,0,167
9    33391421    rs111904021    C    T    38.23    MQFilter40    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.122;DB;DP=17;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=2.9941;MQ=34.23;MQ0=0;MQRankSum=0.303;QD=2.25;ReadPosRankSum=1.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:13,4:17:68.22:68,0,279
9    33391479    rs4080365    G    A    113.63    MQFilter40    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=29;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=1.5226;MQ=35.05;MQ0=0;MQRankSum=2.887;QD=3.92;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=S17;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33391454_33391571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379503    GT:AD:DP:GQ:PL    0/1:23,6:29:99:144,0,292
9    33395031    rs72707429    G    A    466.19    HaplotypeScoreFilter13    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=57;Dels=0.0;FS=1.277;HRun=0;HaplotypeScore=14.8696;MQ=49.61;MQ0=2;MQRankSum=-2.395;QD=8.18;ReadPosRankSum=-1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:35,22:57:99:496,0,800
9    33395039    rs72707431    C    T    453.38    HaplotypeScoreFilter13    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=61;Dels=0.0;FS=2.483;HRun=0;HaplotypeScore=16.4357;MQ=49.62;MQ0=2;MQRankSum=-2.516;QD=7.43;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297988    GT:AD:DP:GQ:PL    0/1:37,24:61:99:483,0,906
9    33395108    rs2381003    G    A    194.72    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.236;DB;DP=44;Dels=0.0;FS=1.582;HRun=1;HaplotypeScore=1.9523;MQ=51.67;MQ0=2;MQRankSum=-2.441;QD=4.43;ReadPosRankSum=-2.189;SNPEFF_AMINO_ACID_CHANGE=L37;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33395076_33395233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379506    GT:AD:DP:GQ:PL    0/1:33,11:44:99:225,0,1030
9    33395196    rs642636    A    G    1261.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.39;MQ0=3;QD=30.76;SNPEFF_AMINO_ACID_CHANGE=L7;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33395076_33395233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379506    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1294,102,0
9    33442952    rs2228332    G    A    516.47    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.389;DB;DP=39;Dels=0.0;FS=4.039;HRun=2;HaplotypeScore=0.6651;MQ=59.41;MQ0=0;MQRankSum=0.658;QD=13.24;ReadPosRankSum=-0.804;SNPEFF_AMINO_ACID_CHANGE=F130;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33442850_33442968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297991    GT:AD:DP:GQ:PL    0/1:21,18:39:99:546,0,676
9    33442986    rs2231231    A    C    303.73    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.165;DB;DP=29;Dels=0.0;FS=7.04;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-2.073;QD=10.47;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297991    GT:AD:DP:GQ:PL    0/1:15,14:29:99:334,0,502
9    33444000    rs2227285    G    C    95.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=5.5601;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=13.58;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297991    GT:AD:DP:GQ:PL    0/1:3,4:7:68.96:125,0,69
9    33447424    rs591810    C    G    67.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=11.19;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=L35;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33447421_33447609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297991    GT:AD:DP:GQ:PL    0/1:2,4:6:69.36:97,0,69
9    33465182    rs2785210    G    A    34.36    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.9998;MQ=57.9;MQ0=0;MQRankSum=-0.729;QD=3.82;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297990    GT:AD:DP:GQ:PL    0/1:5,4:9:64.35:64,0,172
9    33466219    rs3739681    A    C    385.98    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.965;DB;DP=28;Dels=0.0;FS=23.542;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=13.78;ReadPosRankSum=-0.704;SNPEFF_AMINO_ACID_CHANGE=V294;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33466069_33466223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541373    GT:AD:DP:GQ:PL    0/1:15,13:28:99:416,0,459
9    33467983    rs679644    G    A    3681.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.77;MQ0=0;QD=36.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496319    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3681,274,0
9    33468682    rs11795028    T    C    1769.45    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.154;DB;DP=173;Dels=0.0;FS=1.237;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.617;QD=10.23;ReadPosRankSum=-0.435;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496319    GT:AD:DP:GQ:PL    0/1:101,72:173:99:1799,0,3319
9    33469427    rs10813983    G    A    656.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.154;QD=21.88;ReadPosRankSum=0.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496319    GT:AD:DP:GQ:PL    0/1:10,20:30:99:686,0,281
9    33473893    rs2777744    T    G    188.96    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=17;Dels=0.0;FS=15.315;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.625;QD=11.12;ReadPosRankSum=0.818;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464829    GT:AD:DP:GQ:PL    0/1:9,8:17:99:219,0,315
9    33524305    rs2380774    A    G    76.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.24;MQ0=0;QD=19.15;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290943    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:109,9,0
9    33524684    rs3843933    G    A    201.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=R66K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33524392_33524693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290943    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
9    33555701    .    TC    T    257.53    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=4.14;DP=28;FS=1.583;HRun=1;HaplotypeScore=66.8765;IndelType=D;MQ=43.88;MQ0=0;MQRankSum=-0.643;QD=8.31;ReadPosRankSum=1.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290943    GT:AD:DP:GQ:PL    0/1:19,12:28:99:297,0,715
9    33558025    rs34748833    T    A    325.31    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.83;DB;DP=38;Dels=0.0;FS=4.424;HRun=0;HaplotypeScore=1.6671;MQ=54.11;MQ0=0;MQRankSum=-2.928;QD=8.56;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290943    GT:AD:DP:GQ:PL    0/1:23,14:38:99:355,0,841
9    33566234    rs62559879    C    T    457.22    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=48;Dels=0.0;FS=8.783;HRun=0;HaplotypeScore=0.6651;MQ=50.43;MQ0=0;MQRankSum=-0.14;QD=9.53;ReadPosRankSum=-1.668;SNPEFF_AMINO_ACID_CHANGE=A145;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33566217_33566498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357927    GT:AD:DP:GQ:PL    0/1:28,20:48:99:487,0,852
9    33568789    rs10971566    T    G    1866.72    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=3.609;DB;DP=113;Dels=0.0;FS=1.508;HRun=0;HaplotypeScore=0.5784;MQ=59.69;MQ0=0;MQRankSum=-0.291;QD=16.52;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=L344;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33568669_33568891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357927    GT:AD:DP:GQ:PL    0/1:52,61:113:99:1897,0,1679
9    33571221    rs143529725    AT    A    129.04    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=27;FS=0.0;HRun=11;HaplotypeScore=71.1813;IndelType=D;MQ=51.56;MQ0=0;MQRankSum=-1.186;QD=4.78;ReadPosRankSum=1.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426460    GT:AD:DP:GQ:PL    0/1:17,10:27:99:168,0,432
9    33571946    rs7037035    C    T    1143.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=42.87;MQ0=0;QD=27.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426460    GT:AD:DP:GQ:PL    1/1:0,42:42:96.24:1177,96,0
9    33573212    rs12378940    G    A    44.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.56;MQ0=0;MQRankSum=0.0;QD=5.62;ReadPosRankSum=-2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290943    GT:AD:DP:GQ:PL    0/1:4,4:8:74.98:75,0,141
9    33573377    rs597219    T    C    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.24;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290943    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,102
9    33602327    rs10971597    C    T    248.67    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=31;Dels=0.0;FS=8.498;HRun=0;HaplotypeScore=0.0;MQ=55.87;MQ0=0;MQRankSum=0.594;QD=8.02;ReadPosRankSum=1.694;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-255A11.21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432139    GT:AD:DP:GQ:PL    0/1:21,10:31:99:279,0,747
9    33618028    rs855511    A    G    47.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.29;ReadPosRankSum=1.422;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV20OR9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379435    GT:AD:DP:GQ:PL    0/1:6,3:9:77.65:78,0,209
9    33618358    rs855512    A    G    1036.93    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=1.005;DB;DP=122;Dels=0.0;FS=6.311;HRun=0;HaplotypeScore=3.5484;MQ=59.16;MQ0=0;MQRankSum=-0.137;QD=8.5;ReadPosRankSum=-1.037;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV20OR9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379435    GT:AD:DP:GQ:PL    0/1:80,42:122:99:1067,0,2609
9    33618460    rs966447    A    T    1002.14    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=0.378;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;MQRankSum=1.139;QD=8.64;ReadPosRankSum=-0.532;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV20OR9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379435    GT:AD:DP:GQ:PL    0/1:77,38:116:99:1032,0,2489
9    33618497    rs2380835    G    A    777.92    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=96;Dels=0.0;FS=3.174;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.105;QD=8.1;ReadPosRankSum=0.295;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRBV20OR9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379435    GT:AD:DP:GQ:PL    0/1:66,30:96:99:808,0,1957
9    33624429    rs855523    A    C    306.06    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=36;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.9947;MQ=57.9;MQ0=0;MQRankSum=-0.491;QD=8.5;ReadPosRankSum=-0.529;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ANXA2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426153    GT:AD:DP:GQ:PL    0/1:17,19:36:99:336,0,574
9    33624525    rs146208858    C    T    729.18    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.382;DB;DP=45;Dels=0.0;FS=2.54;HRun=1;HaplotypeScore=0.0;MQ=52.72;MQ0=0;MQRankSum=0.582;QD=16.2;ReadPosRankSum=0.286;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ANXA2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426153    GT:AD:DP:GQ:PL    0/1:20,25:45:99:759,0,625
9    33625185    rs36079164    C    T    347.10    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=56.62;MQ0=0;MQRankSum=0.424;QD=16.53;ReadPosRankSum=0.733;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ANXA2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426153    GT:AD:DP:GQ:PL    0/1:9,12:21:99:377,0,263
9    33625405    rs855524    C    T    104.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.88;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ANXA2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435128    GT:AD:DP:GQ:PL    0/1:1,4:5:25.61:134,0,26
9    33637973    rs855540    C    T    456.59    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.293;QD=17.56;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_pseudogene;SNPEFF_GENE_NAME=TRBV22OR9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441373    GT:AD:DP:GQ:PL    0/1:10,16:26:99:487,0,301
9    33649383    rs855547    C    A    693.05    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.223;DB;DP=50;Dels=0.0;FS=2.504;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.456;QD=13.86;ReadPosRankSum=-1.971;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_pseudogene;SNPEFF_GENE_NAME=TRBV24OR9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416632    GT:AD:DP:GQ:PL    0/1:24,26:50:99:723,0,744
9    33750748    rs10971678    G    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
9    33795808    rs2075584    A    G    133.76    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=49.96;MQ0=0;MQRankSum=0.736;QD=22.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:1,5:6:3.66:163,0,4
9    33796827    .    G    A    65.68    QDFilter2    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DP=80;Dels=0.0;FS=10.995;HRun=3;HaplotypeScore=0.9332;MQ=50.54;MQ0=4;MQRankSum=-6.809;QD=0.82;ReadPosRankSum=-0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:54,26:80:95.67:96,0,1907
9    33796912    rs855580    A    G    527.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.957;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=55.7;MQ0=0;MQRankSum=2.627;QD=27.78;ReadPosRankSum=0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    1/1:3,16:19:45.14:561,45,0
9    33797573    .    G    A    30.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.09;MQ0=0;MQRankSum=-1.537;QD=5.1;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:3,3:6:60.58:61,0,96
9    33797617    rs62555901    C    T    44.80    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=48.28;MQ0=0;MQRankSum=-1.517;QD=5.6;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:5,3:8:74.80:75,0,153
9    33797630    .    G    A    136.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=47.05;MQ0=0;MQRankSum=-3.016;QD=9.78;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:7,7:14:99:167,0,188
9    33797656    .    C    T    167.27    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.795;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=46.68;MQ0=0;MQRankSum=-3.091;QD=8.8;ReadPosRankSum=-0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:10,9:19:99:197,0,300
9    33797679    .    C    T    66.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.31;MQ0=0;MQRankSum=-3.693;QD=3.18;ReadPosRankSum=2.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:14,7:21:96.79:97,0,520
9    33797680    .    C    G    63.79    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.07;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.68;MQ0=0;MQRankSum=-3.736;QD=2.9;ReadPosRankSum=2.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:15,7:22:93.78:94,0,556
9    33797696    rs78532926    A    G    66.18    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.1;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=54.1;MQ0=0;MQRankSum=-3.633;QD=2.65;ReadPosRankSum=1.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:18,6:25:96.18:96,0,621
9    33797761    rs83922    G    A    1501.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.92;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    1/1:0,45:49:99:1535,117,0
9    33797928    .    G    GCT    542.11    PASS    AB=0.897;AC=1;AF=0.50;AN=2;BaseQRankSum=7.089;DP=173;FS=8.032;HRun=0;HaplotypeScore=1090.7739;IndelType=I;MQ=56.73;MQ0=0;MQRankSum=-7.094;QD=3.12;ReadPosRankSum=-0.575;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_33797827_33798080;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:154,17:173:99:581,0,6824
9    33797930    .    GAC    G    274.56    QDFilter2    AB=0.899;AC=1;AF=0.50;AN=2;BaseQRankSum=7.103;DP=178;FS=8.009;HRun=0;HaplotypeScore=1149.4044;IndelType=D;MQ=56.82;MQ0=0;MQRankSum=-7.108;QD=1.53;ReadPosRankSum=0.42;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_33797827_33798080;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:159,20:178:99:314,0,8092
9    33798017    rs855581    A    G    3639.93    PASS    AB=0.169;AC=1;AF=0.50;AN=2;BaseQRankSum=0.88;DB;DP=148;Dels=0.0;FS=3.021;HRun=0;HaplotypeScore=2.6368;MQ=55.19;MQ0=0;MQRankSum=7.488;QD=24.59;ReadPosRankSum=2.546;SNPEFF_AMINO_ACID_CHANGE=T124A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33797827_33798080;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:25,123:148:99:3640,0,199
9    33798052    .    C    T    554.12    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=4.651;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9097;MQ=52.96;MQ0=0;MQRankSum=-9.136;QD=3.55;ReadPosRankSum=1.939;SNPEFF_AMINO_ACID_CHANGE=S135;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33797827_33798080;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:116,40:156:99:584,0,3411
9    33798079    rs144845866    T    C    424.73    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.94;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5382;MQ=53.02;MQ0=0;MQRankSum=-8.501;QD=3.12;ReadPosRankSum=4.17;SNPEFF_AMINO_ACID_CHANGE=G144;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33797827_33798080;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:102,34:136:99:455,0,3170
9    33798112    .    C    T    214.51    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8075;MQ=53.13;MQ0=0;MQRankSum=-8.13;QD=1.77;ReadPosRankSum=-4.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477653    GT:AD:DP:GQ:PL    0/1:90,30:121:99:245,0,2959
9    33798450    .    TCTA    T    415.79    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=6.66;DP=141;FS=9.614;HRun=0;HaplotypeScore=914.4454;IndelType=D;MQ=54.91;MQ0=0;MQRankSum=-6.666;QD=2.75;ReadPosRankSum=0.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477653    GT:AD:DP:GQ:PL    0/1:124,27:141:99:455,0,7892
9    33798574    .    G    A    405.66    QDFilter2    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.383;DP=222;Dels=0.0;FS=5.832;HRun=1;HaplotypeScore=1.933;MQ=52.28;MQ0=3;MQRankSum=-10.819;QD=1.83;ReadPosRankSum=4.056;SNPEFF_AMINO_ACID_CHANGE=S175N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33798484_33798620;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:161,61:222:99:436,0,5403
9    33798596    .    T    C    452.60    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.936;DP=218;Dels=0.0;FS=11.946;HRun=0;HaplotypeScore=4.7333;MQ=51.84;MQ0=3;MQRankSum=-11.037;QD=2.08;ReadPosRankSum=5.492;SNPEFF_AMINO_ACID_CHANGE=L182;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33798484_33798620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:155,63:218:99:483,0,5041
9    33798633    .    T    C    262.11    QDFilter2    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DP=181;Dels=0.0;FS=19.78;HRun=3;HaplotypeScore=3.3454;MQ=52.23;MQ0=2;MQRankSum=-9.505;QD=1.45;ReadPosRankSum=-3.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457896    GT:AD:DP:GQ:PL    0/1:131,50:181:99:292,0,4078
9    33798728    .    CT    C    75.68    QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=3.873;DP=43;FS=0.0;HRun=1;HaplotypeScore=216.4722;IndelType=D;MQ=53.25;MQ0=0;MQRankSum=-3.908;QD=1.54;ReadPosRankSum=0.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457896    GT:AD:DP:GQ:PL    0/1:37,12:43:99:115,0,1618
9    33798916    .    C    T    52.92    QDFilter2    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=0.245;DP=30;Dels=0.0;FS=4.238;HRun=0;HaplotypeScore=0.0;MQ=54.2;MQ0=0;MQRankSum=-3.972;QD=1.76;ReadPosRankSum=-2.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457896    GT:AD:DP:GQ:PL    0/1:23,7:30:82.91:83,0,829
9    33798960    rs72711744    C    G    457.57    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=1.508;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.706;MQ=52.82;MQ0=0;MQRankSum=-6.428;QD=5.94;ReadPosRankSum=2.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457896    GT:AD:DP:GQ:PL    0/1:53,23:77:99:488,0,1677
9    33798998    .    T    C    573.75    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=5.019;DP=119;Dels=0.0;FS=2.54;HRun=0;HaplotypeScore=4.0483;MQ=52.84;MQ0=0;MQRankSum=-7.746;QD=4.82;ReadPosRankSum=-0.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457896    GT:AD:DP:GQ:PL    0/1:87,32:119:99:604,0,2906
9    33799010    .    C    T    505.57    PASS    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.667;DP=124;Dels=0.0;FS=4.04;HRun=1;HaplotypeScore=6.0329;MQ=52.89;MQ0=0;MQRankSum=-8.012;QD=4.08;ReadPosRankSum=-2.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457896    GT:AD:DP:GQ:PL    0/1:92,31:124:99:536,0,3141
9    33799026    rs148495550    C    G    421.12    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=0.415;DB;DP=135;Dels=0.0;FS=3.66;HRun=1;HaplotypeScore=7.0572;MQ=53.51;MQ0=0;MQRankSum=-8.25;QD=3.12;ReadPosRankSum=-1.923;SNPEFF_AMINO_ACID_CHANGE=R191G;SNPEFF_CODON_CHANGE=Cgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33799026_33799228;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:104,31:135:99:451,0,3257
9    33799043    rs142813493    T    A    178.83    QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=148;Dels=0.0;FS=0.957;HRun=0;HaplotypeScore=6.444;MQ=54.1;MQ0=0;MQRankSum=-8.109;QD=1.21;ReadPosRankSum=0.002;SNPEFF_AMINO_ACID_CHANGE=P196;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33799026_33799228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:117,30:148:99:209,0,3826
9    33799055    rs148797139    C    T    59.01    QDFilter2    AB=0.799;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.027;DB;DP=149;Dels=0.0;FS=3.394;HRun=0;HaplotypeScore=10.2753;MQ=54.45;MQ0=0;MQRankSum=-8.414;QD=0.4;ReadPosRankSum=0.794;SNPEFF_AMINO_ACID_CHANGE=N200;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33799026_33799228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:119,30:149:89:89,0,3632
9    33799056    rs142473318    G    A    56.09    QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=3.786;DB;DP=151;Dels=0.0;FS=2.061;HRun=0;HaplotypeScore=10.2753;MQ=54.53;MQ0=0;MQRankSum=-7.949;QD=0.37;ReadPosRankSum=0.91;SNPEFF_AMINO_ACID_CHANGE=G201R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33799026_33799228;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:122,28:151:86.09:86,0,3437
9    33799071    rs147767884    G    A    69.17    QDFilter2    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=4.103;DB;DP=149;Dels=0.0;FS=2.087;HRun=1;HaplotypeScore=11.6869;MQ=54.99;MQ0=0;MQRankSum=-8.119;QD=0.46;ReadPosRankSum=-0.811;SNPEFF_AMINO_ACID_CHANGE=V206I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33799026_33799228;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:122,27:149:99:99,0,3927
9    33799163    .    C    A    487.48    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=3.397;DP=198;Dels=0.0;FS=8.607;HRun=0;HaplotypeScore=7.9582;MQ=53.64;MQ0=3;MQRankSum=-9.437;QD=2.46;ReadPosRankSum=6.098;SNPEFF_AMINO_ACID_CHANGE=I236;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33799026_33799228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429677    GT:AD:DP:GQ:PL    0/1:149,48:198:99:517,0,4434
9    33799181    .    C    T    458.38    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.985;DP=184;Dels=0.0;FS=4.382;HRun=0;HaplotypeScore=11.3039;MQ=52.95;MQ0=3;MQRankSum=-7.878;QD=2.49;ReadPosRankSum=1.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457896    GT:AD:DP:GQ:PL    0/1:144,40:184:99:488,0,4477
9    33799186    .    G    A    474.40    PASS    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=1.476;DP=175;Dels=0.0;FS=3.167;HRun=0;HaplotypeScore=7.5611;MQ=52.71;MQ0=3;MQRankSum=-7.834;QD=2.71;ReadPosRankSum=0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457896    GT:AD:DP:GQ:PL    0/1:136,39:175:99:504,0,4075
9    33799230    .    C    CTG    162.68    QDFilter2    AB=0.917;AC=1;AF=0.50;AN=2;BaseQRankSum=4.637;DP=93;FS=2.326;HRun=0;HaplotypeScore=442.6998;IndelType=I;MQ=55.53;MQ0=1;MQRankSum=-4.594;QD=1.63;ReadPosRankSum=-1.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    0/1:91,8:93:99:202,0,3402
9    33799370    rs216345    T    C    408.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.93;MQ0=0;QD=31.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342836    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:442,33,0
9    33817617    rs855719    T    C    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_33817565_33817932;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263228    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    33927899    rs307692    G    A    538.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.47;SNPEFF_AMINO_ACID_CHANGE=P681S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33927850_33927990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418786    GT:AD:DP:GQ:PL    1/1:1,21:22:45.11:571,45,0
9    33935736    rs307652    A    G    1003.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=L323;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33935320_33935876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379225    GT:AD:DP:GQ:PL    1/1:0,30:30:78.23:1037,78,0
9    33938793    rs66486667    CA    C    97.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335;DB;DP=32;FS=0.0;HRun=18;HaplotypeScore=261.0989;IndelType=D;MQ=52.74;MQ0=0;MQRankSum=0.632;QD=2.95;ReadPosRankSum=0.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351580    GT:AD:DP:GQ:PL    1/1:10,13:32:4.13:137,4,0
9    33948652    rs307654    T    C    820.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=35.67;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_33948372_33948964;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379225    GT:AD:DP:GQ:PL    1/1:0,22:23:63.21:853,63,0
9    33956023    rs187233621    A    G    584.03    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.957;DB;DP=53;Dels=0.0;FS=1.225;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.188;QD=11.02;ReadPosRankSum=-2.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351580    GT:AD:DP:GQ:PL    0/1:29,24:53:99:614,0,955
9    33971740    rs3739690    A    G    1384.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=P136;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_33971649_33971752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379260    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1417,108,0
9    33996507    rs7048343    T    C    61.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351580    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:93,9,0
9    34017015    rs11432780    G    GA    382.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.423;DB;DP=25;FS=5.464;HRun=13;HaplotypeScore=176.6492;IndelType=I;MQ=59.89;MQ0=0;MQRankSum=1.588;QD=15.31;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351580    GT:AD:DP:GQ:PL    1/1:7,16:25:12.16:424,12,0
9    34017106    rs1785506    C    T    1423.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7128;MQ=59.54;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=R14Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34017048_34017187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351580    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1457,108,0
9    34107505    rs11557154    C    T    1782.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.257;QD=33.0;ReadPosRankSum=1.668;SNPEFF_AMINO_ACID_CHANGE=R110Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34107357_34107563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450964    GT:AD:DP:GQ:PL    1/1:1,53:54:99:1815,104,0
9    34242242    rs7857658    G    A    198.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297661    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:231,18,0
9    34256347    rs10814083    C    T    928.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.0;SNPEFF_AMINO_ACID_CHANGE=G1086;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34255733_34257979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379166    GT:AD:DP:GQ:PL    1/1:1,31:32:75.24:961,75,0
9    34269079    rs10972032    C    T    204.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345050    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
9    34286486    rs6476442    G    T    666.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345050    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:700,54,0
9    34306571    rs7032930    T    C    654.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345050    GT:AD:DP:GQ:PL    1/1:0,20:20:60.15:688,60,0
9    34371788    rs7852399    A    T    605.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_AMINO_ACID_CHANGE=F351Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34366668_34373004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1161;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297625    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:638,51,0
9    34372783    rs4879781    G    C    1118.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=36.09;SNPEFF_AMINO_ACID_CHANGE=D16E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34372615_34372830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1161;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379142    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1152,87,0
9    34372873    rs4879782    C    G    1345.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_34366668_34373004;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1161;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297625    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1379,102,0
9    34378999    rs3818830    A    T    497.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297623    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:530,39,0
9    34382726    rs3808876    A    G    1437.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.055;DB;DP=46;Dels=0.0;FS=3.324;HRun=1;HaplotypeScore=0.0;MQ=58.07;MQ0=0;MQRankSum=1.431;QD=31.25;ReadPosRankSum=-0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297623    GT:AD:DP:GQ:PL    1/1:1,45:46:82.53:1471,83,0
9    34385949    rs10119084    G    C    172.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297623    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
9    34402173    rs10738926    A    G    749.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379078    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:782,57,0
9    34485646    rs2274591    C    T    78.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242317    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
9    34489828    rs3793473    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470982    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    34500595    rs4878575    G    T    193.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437363    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:227,18,0
9    34507081    rs1571405    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242317    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    34512552    rs9657620    G    A    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242317    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
9    34552437    rs2274592    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417345    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    34569010    rs9695558    T    A    113.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351266    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
9    34610608    rs183761743    G    A    287.27    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=19.15;ReadPosRankSum=1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259632    GT:AD:DP:GQ:PL    0/1:6,9:15:99:317,0,191
9    34615896    rs67621701    C    CA    92.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;DB;DP=18;FS=0.0;HRun=16;HaplotypeScore=251.4013;IndelType=I;MQ=44.57;MQ0=0;MQRankSum=-1.044;QD=5.16;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DCTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378911    GT:AD:DP:GQ:PL    1/1:11,6:18:7.91:134,8,0
9    34618641    rs3802427    C    T    446.61    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.902;DB;DP=38;Dels=0.0;FS=1.747;HRun=1;HaplotypeScore=0.5784;MQ=58.78;MQ0=0;MQRankSum=0.807;QD=11.75;ReadPosRankSum=0.838;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378909    GT:AD:DP:GQ:PL    0/1:20,18:38:99:477,0,611
9    34622389    rs3808869    A    C    767.70    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.468;DB;DP=42;Dels=0.0;FS=1.242;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.04;QD=18.28;ReadPosRankSum=-0.227;SNPEFF_AMINO_ACID_CHANGE=C335G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34622344_34622526;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378909    GT:AD:DP:GQ:PL    0/1:17,25:42:99:798,0,404
9    34625967    rs190798804    T    C    31.92    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.56;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378909    GT:AD:DP:GQ:PL    0/1:4,3:7:61.91:62,0,125
9    34635598    rs4879809    T    C    283.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGMAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478146    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:317,24,0
9    34637690    rs1800866    T    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_AMINO_ACID_CHANGE=Q2P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34637544_34637768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGMAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277010    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    34655734    rs11575576    G    T    37.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.59;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GALT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378842    GT:AD:DP:GQ:PL    0/1:3,2:5:67.92:68,0,69
9    34657663    rs1104748    T    C    168.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCL27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259631    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
9    34723035    rs10814138    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    34723181    rs2297132    G    A    112.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=14.07;ReadPosRankSum=-0.922;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,106
9    34723744    rs4878588    C    A    456.86    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.597;DB;DP=29;Dels=0.0;FS=7.732;HRun=0;HaplotypeScore=0.0;MQ=57.89;MQ0=0;MQRankSum=0.065;QD=15.75;ReadPosRankSum=-1.2;SNPEFF_AMINO_ACID_CHANGE=A1165S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:14,15:29:99:487,0,494
9    34723935    rs2297134    C    T    366.31    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=3.692;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.92;MQ0=0;MQRankSum=0.522;QD=11.1;ReadPosRankSum=-0.414;SNPEFF_AMINO_ACID_CHANGE=R1101H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:17,16:33:99:396,0,343
9    34724059    rs117821239    G    A    87.85    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=25;Dels=0.0;FS=11.781;HRun=0;HaplotypeScore=0.0;MQ=41.24;MQ0=1;MQRankSum=-1.233;QD=3.51;ReadPosRankSum=-1.033;SNPEFF_AMINO_ACID_CHANGE=H1060Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:18,7:25:99:118,0,557
9    34724241    rs3739881    C    A    886.14    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.68;MQ0=0;MQRankSum=0.691;QD=14.77;ReadPosRankSum=-1.829;SNPEFF_AMINO_ACID_CHANGE=S999I;SNPEFF_CODON_CHANGE=aGt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:28,32:60:99:916,0,961
9    34724786    rs72617336    G    A    467.75    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.337;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.4;MQ0=14;MQRankSum=1.663;QD=5.26;ReadPosRankSum=-0.28;SNPEFF_AMINO_ACID_CHANGE=P817;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:58,30:88:99:498,0,1002
9    34724796    rs150496452    T    A    381.80    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.34;MQ0=17;MQRankSum=1.489;QD=4.49;ReadPosRankSum=1.582;SNPEFF_AMINO_ACID_CHANGE=E814V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:56,29:85:99:412,0,986
9    34724987    .    A    G    51.89    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=40.57;MQ0=10;MQRankSum=-5.003;QD=0.46;ReadPosRankSum=-0.229;SNPEFF_AMINO_ACID_CHANGE=A750;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:88,24:112:81.88:82,0,2623
9    34725047    rs78716275    C    T    903.74    MQFilter40    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=4.237;DB;DP=145;Dels=0.0;FS=5.824;HRun=0;HaplotypeScore=1.9454;MQ=38.22;MQ0=7;MQRankSum=-1.048;QD=6.23;ReadPosRankSum=0.843;SNPEFF_AMINO_ACID_CHANGE=P730;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:102,43:145:99:934,0,2459
9    34725069    rs114933270    T    A    636.30    MQFilter40    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.616;DB;DP=133;Dels=0.0;FS=13.267;HRun=0;HaplotypeScore=1.9148;MQ=39.02;MQ0=8;MQRankSum=-7.351;QD=4.78;ReadPosRankSum=3.837;SNPEFF_AMINO_ACID_CHANGE=E723V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:86,47:133:99:666,0,2439
9    34725742    rs62547039    T    C    35.51    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=30.17;MQ0=2;MQRankSum=0.988;QD=4.44;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=M499V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:3,5:8:65.50:66,0,92
9    34726671    rs1854574    G    A    1597.73    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=3.468;DB;DP=95;Dels=0.0;FS=2.8;HRun=0;HaplotypeScore=3.4634;MQ=56.83;MQ0=0;MQRankSum=0.966;QD=16.82;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=T189M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34723052_34726985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:41,54:95:99:1628,0,1106
9    34727831    rs7035198    A    G    65.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=10.84;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:2,4:6:68.60:95,0,69
9    34727861    rs2812341    A    T    112.42    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:3,5:8:99:142,0,103
9    34729452    rs10115191    A    G    856.87    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.081;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8273;MQ=59.39;MQ0=0;MQRankSum=0.179;QD=12.6;ReadPosRankSum=-0.488;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_34729281_34729464;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-195F19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378788    GT:AD:DP:GQ:PL    0/1:38,30:68:99:887,0,1150
9    34832558    rs41305313    C    G    585.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL589645.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455647    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:619,45,0
9    34832919    rs12377823    C    T    2160.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.34;MQ0=3;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf144;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378786    GT:AD:DP:GQ:PL    1/1:2,68:70:99:2194,171,0
9    34833080    rs145267622    TC    T    1127.30    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=2.526;DB;DP=41;FS=8.737;HRun=1;HaplotypeScore=112.0138;IndelType=D;MQ=35.54;MQ0=2;MQRankSum=1.458;QD=22.55;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf144;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378786    GT:AD:DP:GQ:PL    0/1:13,37:41:99:1166,0,312
9    34834103    .    T    C    153.79    MQFilter40    AC=2;AF=1.00;AN=2;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.19;MQ0=18;QD=4.96;SNPEFF_AMINO_ACID_CHANGE=L462;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34832642_34836049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL589645.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455647    GT:AD:DP:GQ:PL    1/1:0,31:31:21.01:187,21,0
9    34834109    .    T    C    171.85    MQFilter40    AC=2;AF=1.00;AN=2;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.93;MQ0=19;QD=5.54;SNPEFF_AMINO_ACID_CHANGE=P460;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34832642_34836049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL589645.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455647    GT:AD:DP:GQ:PL    1/1:0,31:31:21.02:205,21,0
9    34834494    rs77822083    C    T    180.95    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=0.404;DB;DP=48;Dels=0.0;FS=5.327;HRun=0;HaplotypeScore=4.2699;MQ=40.73;MQ0=2;MQRankSum=-0.487;QD=3.77;ReadPosRankSum=0.821;SNPEFF_AMINO_ACID_CHANGE=R332H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34832642_34836049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL589645.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455647    GT:AD:DP:GQ:PL    0/1:35,12:48:99:211,0,695
9    34834880    rs112468216    A    C    127.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.78;MQ0=1;QD=21.26;SNPEFF_AMINO_ACID_CHANGE=D203E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34832642_34836049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL589645.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455647    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:160,12,0
9    34834937    .    A    G    201.10    MQFilter40    AC=2;AF=1.00;AN=2;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=27.34;MQ0=1;QD=22.34;SNPEFF_AMINO_ACID_CHANGE=L184;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34832642_34836049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL589645.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455647    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:234,21,0
9    34835273    rs521552    A    C    519.18    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.606;DB;DP=100;Dels=0.0;FS=1.926;HRun=0;HaplotypeScore=0.8667;MQ=44.06;MQ0=2;MQRankSum=-2.519;QD=5.19;ReadPosRankSum=-0.796;SNPEFF_AMINO_ACID_CHANGE=N72K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_34832642_34836049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL589645.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455647    GT:AD:DP:GQ:PL    0/1:71,29:100:99:549,0,2304
9    34835861    rs924566    C    G    2179.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.06;MQ0=0;QD=36.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf144;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378786    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2212,163,0
9    34836905    rs3802426    A    G    119.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf144;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378786    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
9    34837574    rs3739880    C    T    2940    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL589645.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455647    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2973,226,0
9    34972695    rs143527734    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1045;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486477    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    34977759    rs2297647    C    T    75.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.62;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1045;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242315    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,105
9    35042785    rs72722952    C    G    508.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.233;DB;DP=30;Dels=0.0;FS=4.467;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.021;QD=16.94;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312292    GT:AD:DP:GQ:PL    0/1:12,18:30:99:538,0,415
9    35043291    rs615474    G    T    1441.60    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=1.399;DB;DP=110;Dels=0.0;FS=1.547;HRun=1;HaplotypeScore=1.4538;MQ=59.79;MQ0=0;MQRankSum=0.366;QD=13.11;ReadPosRankSum=0.784;SNPEFF_AMINO_ACID_CHANGE=W149L;SNPEFF_CODON_CHANGE=tGg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35042858_35045979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf131;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354479    GT:AD:DP:GQ:PL    0/1:58,52:110:99:1472,0,1719
9    35057768    rs12686362    G    A    87.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479300    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
9    35060302    rs684562    T    C    505.93    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=58.71;MQ0=0;MQRankSum=1.341;QD=14.05;ReadPosRankSum=-0.281;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448530    GT:AD:DP:GQ:PL    0/1:19,17:36:99:536,0,644
9    35060746    rs562381    A    G    564.44    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=0.615;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=0.67;QD=10.65;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417448    GT:AD:DP:GQ:PL    0/1:33,20:53:99:594,0,1078
9    35060955    rs2258240    T    C    2059.59    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=1.678;DB;DP=124;Dels=0.0;FS=1.532;HRun=1;HaplotypeScore=4.4387;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=16.61;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417448    GT:AD:DP:GQ:PL    0/1:53,71:124:99:2090,0,1759
9    35061693    rs11272867    G    GACAGTACACAA    3834.40    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.743;DB;DP=53;FS=2.808;HRun=0;HaplotypeScore=378.846;IndelType=I;MQ=47.09;MQ0=0;MQRankSum=-4.361;QD=72.35;ReadPosRankSum=1.168;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417448    GT:AD:DP:GQ:PL    0/1:33,20:53:99:3834,0,972
9    35062972    rs514492    C    T    1136.06    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.428;DB;DP=116;Dels=0.0;FS=3.707;HRun=1;HaplotypeScore=0.7887;MQ=59.6;MQ0=0;MQRankSum=0.598;QD=9.79;ReadPosRankSum=-1.463;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417448    GT:AD:DP:GQ:PL    0/1:71,45:116:99:1166,0,2076
9    35068201    rs10972300    C    T    2059.38    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=2.278;DB;DP=157;Dels=0.0;FS=2.52;HRun=1;HaplotypeScore=3.7818;MQ=59.71;MQ0=0;MQRankSum=-1.022;QD=13.03;ReadPosRankSum=-0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358901    GT:AD:DP:GQ:PL    0/1:78,79:157:99:2089,0,2551
9    35089048    rs556766    A    C    4647.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.84;MQ0=0;QD=31.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465745    GT:AD:DP:GQ:PL    1/1:0,147:147:99:4648,355,0
9    35094135    .    G    A    189.34    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DP=19;Dels=0.0;FS=13.897;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=9.97;ReadPosRankSum=0.784;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472208    GT:AD:DP:GQ:PL    0/1:11,8:19:99:219,0,388
9    35100002    rs664357    T    C    3808.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=30.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1539;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322813    GT:AD:DP:GQ:PL    1/1:1,124:125:99:3809,304,0
9    35107340    rs149584328    AGT    A    182.07    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=26;FS=4.559;HRun=0;HaplotypeScore=299.3667;IndelType=D;MQ=40.05;MQ0=0;MQRankSum=-1.388;QD=7.0;ReadPosRankSum=-2.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1539;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488109    GT:AD:DP:GQ:PL    0/1:17,5:26:99:221,0,125
9    35107858    rs7039828    C    T    1169.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_AMINO_ACID_CHANGE=S138;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35107378_35108346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1539;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322813    GT:AD:DP:GQ:PL    1/1:0,38:38:93.29:1203,93,0
9    35295984    rs661712    T    C    71.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.25;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378495    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,147
9    35375069    rs3780730    A    G    1676.06    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.202;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.987;QD=14.45;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378495    GT:AD:DP:GQ:PL    0/1:53,63:116:99:1706,0,1749
9    35377772    rs2282001    G    C    91.84    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.244;QD=7.65;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378495    GT:AD:DP:GQ:PL    0/1:7,5:12:99:122,0,223
9    35378009    rs12553623    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    35380996    rs2282000    C    T    488.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=30;Dels=0.0;FS=8.682;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.783;QD=16.29;ReadPosRankSum=-0.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378495    GT:AD:DP:GQ:PL    0/1:12,18:30:99:519,0,324
9    35381504    rs2281999    C    T    235.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=15;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.827;QD=15.69;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378495    GT:AD:DP:GQ:PL    0/1:6,9:15:99:265,0,201
9    35400272    rs4878613    G    A    991.11    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=4.309;DB;DP=76;Dels=0.0;FS=7.723;HRun=0;HaplotypeScore=2.3275;MQ=59.39;MQ0=0;MQRankSum=-0.238;QD=13.04;ReadPosRankSum=-0.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481299    GT:AD:DP:GQ:PL    0/1:40,35:76:99:1021,0,1108
9    35446505    .    T    C    392.04    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.293;QD=13.07;ReadPosRankSum=-0.963;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329395    GT:AD:DP:GQ:PL    0/1:13,17:30:99:422,0,411
9    35546735    rs1535422    A    G    921.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=36.86;SNPEFF_AMINO_ACID_CHANGE=T73A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35546427_35548532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUSC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361226    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:955,69,0
9    35555823    rs946483    T    C    61.05    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=5.55;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361226    GT:AD:DP:GQ:PL    0/1:7,4:11:91.04:91,0,255
9    35556250    rs870978    G    C    62.07    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=19;Dels=0.0;FS=2.884;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=3.27;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361226    GT:AD:DP:GQ:PL    0/1:12,7:19:92.07:92,0,391
9    35557696    rs1890590    G    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399742    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
9    35559369    rs4879906    G    A    135.61    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=2.181;QD=12.33;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399742    GT:AD:DP:GQ:PL    0/1:5,6:11:99:166,0,160
9    35559905    rs12338773    T    C    1163.27    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=4.14;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=20.41;ReadPosRankSum=-0.594;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399742    GT:AD:DP:GQ:PL    0/1:23,34:57:99:1193,0,714
9    35561418    .    C    T    207.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.023;DP=25;Dels=0.0;FS=5.706;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.028;QD=8.31;ReadPosRankSum=0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399742    GT:AD:DP:GQ:PL    0/1:15,10:25:99:238,0,547
9    35562549    rs755774    G    A    229.02    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=24;Dels=0.0;FS=1.643;HRun=0;HaplotypeScore=0.6651;MQ=58.24;MQ0=0;MQRankSum=-0.029;QD=9.54;ReadPosRankSum=0.439;SNPEFF_AMINO_ACID_CHANGE=C189;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35562377_35562571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM166B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399742    GT:AD:DP:GQ:PL    0/1:14,10:24:99:259,0,408
9    35610523    rs71940749    CCCCTGCTCTGAGT    C    1257.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=305.9579;IndelType=D;MQ=35.14;MQ0=0;QD=48.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TESK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336395    GT:AD:DP:GQ:PL    1/1:12,14:26:42.14:1299,42,0
9    35610912    rs4879913    A    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TESK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336395    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
9    35616583    rs2095858    A    T    402.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378430    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:436,33,0
9    35650458    rs2297880    G    A    1522.83    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=81;Dels=0.0;FS=1.98;HRun=1;HaplotypeScore=2.5566;MQ=59.14;MQ0=0;MQRankSum=-1.089;QD=18.8;ReadPosRankSum=-1.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259608    GT:AD:DP:GQ:PL    0/1:31,50:81:99:1553,0,914
9    35660990    rs1339374    A    G    1268.40    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.687;DB;DP=79;Dels=0.0;FS=0.921;HRun=1;HaplotypeScore=1.865;MQ=59.71;MQ0=0;MQRankSum=-0.21;QD=16.06;ReadPosRankSum=-1.41;SNPEFF_AMINO_ACID_CHANGE=I193V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35660937_35661184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC107;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378409    GT:AD:DP:GQ:PL    0/1:34,44:79:99:1298,0,1095
9    35661243    rs35234337    C    T    187.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=20.82;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468876    GT:AD:DP:GQ:PL    0/1:3,6:9:96.73:217,0,97
9    35662251    rs2297879    T    C    682.33    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.408;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.231;QD=14.83;ReadPosRankSum=0.121;SNPEFF_AMINO_ACID_CHANGE=H270R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35662176_35662264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf100;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378395    GT:AD:DP:GQ:PL    0/1:22,24:46:99:712,0,660
9    35664624    rs75010572    C    A    166.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327351    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
9    35677702    rs2857801    T    A    617.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7321;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329305    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:650,48,0
9    35677711    rs138403388    AC    A    224.89    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=19;FS=0.0;HRun=6;HaplotypeScore=101.1137;IndelType=D;MQ=61.13;MQ0=0;MQRankSum=0.367;QD=11.84;ReadPosRankSum=0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329305    GT:AD:DP:GQ:PL    0/1:9,10:19:99:264,0,296
9    35679061    rs2857802    C    T    2983.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=34.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329305    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3016,235,0
9    35684822    rs11441526    C    CG    298.33    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=36;FS=0.0;HRun=8;HaplotypeScore=104.5385;IndelType=I;MQ=59.36;MQ0=0;MQRankSum=0.077;QD=8.29;ReadPosRankSum=-1.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378357    GT:AD:DP:GQ:PL    0/1:24,12:36:99:337,0,306
9    35700150    rs2295794    C    T    725.02    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=53;Dels=0.0;FS=1.105;HRun=0;HaplotypeScore=1.9988;MQ=60.0;MQ0=0;MQRankSum=0.918;QD=13.68;ReadPosRankSum=-0.864;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464379    GT:AD:DP:GQ:PL    0/1:28,25:53:99:755,0,943
9    35705759    rs11541908    G    A    805.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.342;DB;DP=61;Dels=0.0;FS=2.245;HRun=0;HaplotypeScore=0.9789;MQ=59.24;MQ0=0;MQRankSum=0.402;QD=13.2;ReadPosRankSum=-0.569;SNPEFF_AMINO_ACID_CHANGE=T1801;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35705747_35705848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540444    GT:AD:DP:GQ:PL    0/1:30,30:61:99:835,0,804
9    35707338    rs55810625    G    A    681.68    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.431;DB;DP=53;Dels=0.0;FS=3.933;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.845;QD=12.86;ReadPosRankSum=-1.808;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495712    GT:AD:DP:GQ:PL    0/1:28,25:53:99:712,0,893
9    35711806    rs2249250    G    T    769.09    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.493;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.66;MQ0=0;MQRankSum=0.965;QD=11.31;ReadPosRankSum=1.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314888    GT:AD:DP:GQ:PL    0/1:37,31:68:99:799,0,1241
9    35712003    rs2295795    G    A    612.59    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.157;DB;DP=41;Dels=0.0;FS=4.506;HRun=1;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-1.32;QD=14.94;ReadPosRankSum=-0.379;SNPEFF_AMINO_ACID_CHANGE=S1227L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35712002_35712121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314888    GT:AD:DP:GQ:PL    0/1:19,22:41:99:643,0,573
9    35713181    rs877365    C    T    128.93    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=19;Dels=0.0;FS=2.098;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.056;QD=6.79;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314888    GT:AD:DP:GQ:PL    0/1:12,7:19:99:159,0,449
9    35739115    rs3833700    G    GC    246.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=37.1035;IndelType=I;MQ=58.24;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353704    GT:AD:DP:GQ:PL    1/1:0,6:7:18.06:288,18,0
9    35741531    rs1885375    A    G    145.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=20.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353704    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:178,15,0
9    35749845    rs2236288    G    C    652.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=P31;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35749734_35749868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378078    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:685,54,0
9    35751221    rs1570248    C    T    7654.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=217;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.89;MQ0=0;QD=35.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414286    GT:AD:DP:GQ:PL    1/1:0,217:217:99:7654,554,0
9    35752274    rs140115445    GT    G    291.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=24.597;IndelType=D;MQ=61.19;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414286    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:334,27,0
9    35752433    rs1570250    A    G    433.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414286    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:466,36,0
9    35753898    rs34478611    G    A    3556.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=33.55;ReadPosRankSum=0.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456972    GT:AD:DP:GQ:PL    1/1:1,105:106:99:3557,241,0
9    35801233    rs1322044    T    C    279.54    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.292;QD=13.98;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342694    GT:AD:DP:GQ:PL    0/1:9,11:20:99:310,0,309
9    35801436    rs1078081    C    T    34.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.84;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342694    GT:AD:DP:GQ:PL    0/1:3,2:5:64.17:64,0,102
9    35801856    rs7034957    C    A    795.75    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=50;Dels=0.0;FS=8.572;HRun=0;HaplotypeScore=1.7653;MQ=59.54;MQ0=0;MQRankSum=-0.616;QD=15.91;ReadPosRankSum=-0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342694    GT:AD:DP:GQ:PL    0/1:21,29:50:99:826,0,683
9    35802092    rs2890702    G    C    529.92    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.08;DB;DP=36;Dels=0.0;FS=1.945;HRun=3;HaplotypeScore=0.0;MQ=55.35;MQ0=0;MQRankSum=0.802;QD=14.72;ReadPosRankSum=1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342694    GT:AD:DP:GQ:PL    0/1:15,21:36:99:560,0,468
9    35802583    rs5812    C    T    539.57    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;MQRankSum=0.306;QD=9.47;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=Y598;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35802500_35802604;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342694    GT:AD:DP:GQ:PL    0/1:36,21:57:99:570,0,1123
9    35807190    .    G    A    254.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DP=24;Dels=0.0;FS=4.228;HRun=1;HaplotypeScore=0.9734;MQ=58.64;MQ0=0;MQRankSum=-0.713;QD=10.58;ReadPosRankSum=0.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SPAG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340291    GT:AD:DP:GQ:PL    0/1:14,10:24:99:284,0,436
9    35807401    rs112946422    AGCTGGGGCC    A    2344.23    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=5.329;DB;DP=74;FS=10.984;HRun=0;HaplotypeScore=627.7843;IndelType=D;MQ=49.51;MQ0=0;MQRankSum=-5.42;QD=31.68;ReadPosRankSum=-1.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SPAG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340291    GT:AD:DP:GQ:PL    0/1:45,29:74:99:2383,0,4000
9    35807542    rs13294264    C    T    34.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.74;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SPAG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340291    GT:AD:DP:GQ:PL    0/1:4,2:6:64.42:64,0,106
9    35811485    rs113712230    ACCAGGACCAGAG    A    1268.50    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=4.863;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=455.9423;IndelType=D;MQ=54.04;MQ0=0;MQRankSum=-2.947;QD=28.19;ReadPosRankSum=-0.307;SNPEFF_AMINO_ACID_CHANGE=GSGPG180G;SNPEFF_CODON_CHANGE=ggctctggtcctggt/ggt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_9_35811179_35811998;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SPAG8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000484764    GT:AD:DP:GQ:PL    0/1:31,14:45:99:1308,0,2860
9    35818647    rs2281646    A    G    326.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377984    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
9    35825413    rs4879930    C    T    558.60    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.081;DB;DP=48;Dels=0.0;FS=2.499;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=1.6;QD=11.64;ReadPosRankSum=1.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472182    GT:AD:DP:GQ:PL    0/1:28,20:48:99:589,0,899
9    35826038    rs13294245    T    C    913.47    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.481;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.353;QD=14.73;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=K41E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35825561_35826158;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf128;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377984    GT:AD:DP:GQ:PL    0/1:29,33:62:99:943,0,910
9    35826058    rs13294256    T    C    591.85    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.507;DB;DP=47;Dels=0.0;FS=6.823;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.65;QD=12.59;ReadPosRankSum=1.546;SNPEFF_AMINO_ACID_CHANGE=H34R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35825561_35826158;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf128;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377984    GT:AD:DP:GQ:PL    0/1:25,22:47:99:622,0,816
9    35841071    rs2236292    C    T    89.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=12.84;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377988    GT:AD:DP:GQ:PL    0/1:3,4:7:99:120,0,104
9    35841783    rs2236293    G    A    146.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=14;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=10.44;ReadPosRankSum=-1.097;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_35841523_35841791;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377988    GT:AD:DP:GQ:PL    0/1:8,6:14:99:176,0,220
9    35845929    rs7848557    A    C    1289.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464519    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1322,99,0
9    35852670    rs12346647    T    C    241.83    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.225;QD=17.27;ReadPosRankSum=2.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377988    GT:AD:DP:GQ:PL    0/1:6,8:14:99:272,0,187
9    35869250    rs4879935    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377981    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    35870001    rs7044405    T    C    273.04    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DB;DP=21;Dels=0.0;FS=4.32;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.246;QD=13.0;ReadPosRankSum=-1.021;SNPEFF_AMINO_ACID_CHANGE=H133R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_35869375_35870461;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377981    GT:AD:DP:GQ:PL    0/1:10,11:21:99:303,0,350
9    35943647    rs7867847    C    T    354.12    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.359;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6806;MQ=60.0;MQ0=0;MQRankSum=-0.175;QD=9.84;ReadPosRankSum=-0.716;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PGAM1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436071    GT:AD:DP:GQ:PL    0/1:20,16:36:99:384,0,690
9    35971170    rs13297543    T    C    58.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.92;MQ0=0;MQRankSum=-1.537;QD=9.69;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=YBX1P10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444752    GT:AD:DP:GQ:PL    0/1:3,3:6:88.13:88,0,106
9    36063743    rs942478    C    G    242.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377966    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:275,21,0
9    36091133    rs12235235    G    A    1060.20    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=3.965;DB;DP=59;Dels=0.0;FS=9.29;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.284;QD=17.97;ReadPosRankSum=-0.575;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475774    GT:AD:DP:GQ:PL    0/1:25,34:59:99:1090,0,687
9    36121780    rs2274522    G    A    578.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.15;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.34;MQ0=0;MQRankSum=-1.617;QD=16.53;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377966    GT:AD:DP:GQ:PL    0/1:15,20:35:99:608,0,504
9    36121919    rs10972734    C    G    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377966    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:69,0,27
9    36147881    rs138413630    G    A    1682.63    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.481;DB;DP=131;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.873;MQ=60.0;MQ0=0;MQRankSum=-0.394;QD=12.84;ReadPosRankSum=-1.034;SNPEFF_AMINO_ACID_CHANGE=E38K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_36147783_36147891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLIPR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377959    GT:AD:DP:GQ:PL    0/1:70,61:131:99:1713,0,2212
9    36148722    rs3739613    G    A    54.15    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=10.83;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLIPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377959    GT:AD:DP:GQ:PL    0/1:1,3:5:30.21:84,0,30
9    36169494    rs3739610    G    A    170.81    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.885;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-2.017;QD=6.1;ReadPosRankSum=0.492;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_36169389_36171329;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335119    GT:AD:DP:GQ:PL    0/1:19,9:28:99:201,0,615
9    36169598    rs3739609    T    C    479.11    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.363;DB;DP=57;Dels=0.0;FS=8.092;HRun=0;HaplotypeScore=2.667;MQ=58.78;MQ0=0;MQRankSum=1.124;QD=8.41;ReadPosRankSum=-0.929;SNPEFF_AMINO_ACID_CHANGE=S33;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_36169389_36171329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335119    GT:AD:DP:GQ:PL    0/1:37,20:57:99:509,0,1103
9    36198845    rs2772223    T    C    237.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242285    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:270,21,0
9    36211827    rs1053414    C    T    60.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.248;QD=6.71;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466396    GT:AD:DP:GQ:PL    0/1:6,3:9:90.34:90,0,209
9    36218018    rs615108    C    G    1138.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=37.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339267    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1171,87,0
9    36222649    rs10972795    C    G    266.87    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.17;DB;DP=23;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=11.6;ReadPosRankSum=-0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339267    GT:AD:DP:GQ:PL    0/1:12,11:23:99:297,0,443
9    36223654    rs10758350    G    A    105.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=10.53;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339267    GT:AD:DP:GQ:PL    0/1:5,5:10:99:135,0,181
9    36246594    rs7861442    T    C    122.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339267    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
9    36276857    rs7875447    A    G    1926.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339267    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1959,144,0
9    36277171    rs72624019    C    T    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464497    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    36342181    rs10625223    T    TCTC    366.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=15.4821;IndelType=I;MQ=51.77;MQ0=0;QD=61.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259605    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:408,18,0
9    36369646    rs67602475    CA    C    294.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=12;HaplotypeScore=76.3183;IndelType=D;MQ=59.28;MQ0=0;QD=17.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484621    GT:AD:DP:GQ:PL    1/1:1,14:17:45.90:336,46,0
9    36372737    rs12001805    C    A    124.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488058    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
9    36669228    rs3780133    C    A    563.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MELK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298048    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:597,45,0
9    36674842    rs2274473    C    T    2232.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_AMINO_ACID_CHANGE=N368;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_36674831_36674934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MELK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538311    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2265,166,0
9    36675111    rs7851401    T    C    162.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=23.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MELK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298048    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:195,18,0
9    36675153    rs7865022    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MELK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298048    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    36840623    rs3780135    G    A    196.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=T264I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_36840169_36840633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000520154    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:230,18,0
9    36966379    rs2297108    A    G    148.24    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358127    GT:AD:DP:GQ:PL    0/1:1,5:6:23.17:178,0,23
9    37304168    rs11422051    A    AT    691.25    PASS    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.935;DB;DP=61;FS=9.954;HRun=9;HaplotypeScore=128.7951;IndelType=I;MQ=60.03;MQ0=0;MQRankSum=2.955;QD=11.33;ReadPosRankSum=-1.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336755    GT:AD:DP:GQ:PL    0/1:34,27:61:99:730,0,564
9    37305481    rs3780334    C    G    580.73    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.52;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336755    GT:AD:DP:GQ:PL    0/1:21,19:40:99:611,0,739
9    37422675    rs10973332    C    A    41.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.9;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRHPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493368    GT:AD:DP:GQ:PL    0/1:1,2:3:15.67:72,0,16
9    37426524    rs2736664    C    T    2632.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRHPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318158    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2665,202,0
9    37426748    .    C    T    133.89    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.189;MQ=58.33;MQ0=0;MQRankSum=1.333;QD=9.56;ReadPosRankSum=-0.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRHPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487399    GT:AD:DP:GQ:PL    0/1:9,5:14:99:164,0,279
9    37426804    rs2768658    T    C    100.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRHPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487399    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:133,12,0
9    37429497    rs309460    C    T    120.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRHPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487399    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
9    37429661    rs309459    A    G    1345.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRHPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487399    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1378,111,0
9    37429814    rs309458    A    G    1626.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=59.5;MQ0=0;QD=35.36;SNPEFF_AMINO_ACID_CHANGE=A193;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37429729_37429833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRHPR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318158    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1659,123,0
9    37432264    rs309455    T    C    162.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GRHPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377824    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:195,15,0
9    37441808    rs309450    A    G    3077.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=D247;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37438111_37442552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307750    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3111,241,0
9    37486383    rs10973360    G    A    430.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377798    GT:AD:DP:GQ:PL    1/1:0,13:14:36.09:464,36,0
9    37486603    rs1571234    A    G    2575.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=36.79;SNPEFF_AMINO_ACID_CHANGE=T56A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37486150_37486803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377792    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2608,202,0
9    37486916    rs913278    G    C    712.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377792    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:746,57,0
9    37503124    rs7047823    G    A    2416.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=36.61;SNPEFF_AMINO_ACID_CHANGE=K325;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37503040_37503550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442009    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2449,193,0
9    37522672    rs10973394    G    A    129.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432825    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
9    37536998    rs927930    C    T    1706.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541607    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1740,138,0
9    37537557    rs7044153    G    A    1224.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=37.12;SNPEFF_AMINO_ACID_CHANGE=A323;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37537107_37537940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432825    GT:AD:DP:GQ:PL    1/1:0,33:33:96.31:1258,96,0
9    37592452    rs7021977    G    A    678.10    PASS    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=31;Dels=0.0;FS=1.764;HRun=1;HaplotypeScore=1.748;MQ=60.0;MQ0=0;MQRankSum=-1.765;QD=21.87;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=S26;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37592409_37592639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TOMM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321301    GT:AD:DP:GQ:PL    0/1:9,22:31:99:708,0,252
9    37731177    rs2274323    T    G    369.03    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.817;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.141;QD=18.45;ReadPosRankSum=0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377765    GT:AD:DP:GQ:PL    0/1:7,13:20:99:399,0,221
9    37740637    rs2281872    T    C    410.58    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.715;DB;DP=34;Dels=0.0;FS=1.485;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=12.08;ReadPosRankSum=-0.207;SNPEFF_AMINO_ACID_CHANGE=A526;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37740075_37741313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMPD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536622    GT:AD:DP:GQ:PL    0/1:17,16:34:99:441,0,497
9    37769811    rs10973531    T    G    238.53    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.937;QD=10.84;ReadPosRankSum=-1.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RG9MTD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538370    GT:AD:DP:GQ:PL    0/1:13,9:22:99:269,0,428
9    37783725    rs2274322    T    A    47.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXOSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496910    GT:AD:DP:GQ:PL    0/1:1,3:4:29.74:78,0,30
9    37948724    rs3827519    T    C    305.48    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9468;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=16.08;ReadPosRankSum=0.362;SNPEFF_AMINO_ACID_CHANGE=G418;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37948632_37948751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377707    GT:AD:DP:GQ:PL    0/1:8,11:19:99:335,0,207
9    37974743    rs1138374    T    C    614.93    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.84;DB;DP=57;Dels=0.0;FS=5.783;HRun=1;HaplotypeScore=0.0;MQ=58.36;MQ0=0;MQRankSum=0.752;QD=10.79;ReadPosRankSum=0.283;SNPEFF_AMINO_ACID_CHANGE=S310;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_37974619_37974834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377707    GT:AD:DP:GQ:PL    0/1:33,24:57:99:645,0,894
9    38015327    rs2183130    C    G    300.08    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.091;DB;DP=21;Dels=0.0;FS=6.69;HRun=0;HaplotypeScore=0.9332;MQ=58.89;MQ0=0;MQRankSum=0.81;QD=14.29;ReadPosRankSum=0.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377700    GT:AD:DP:GQ:PL    0/1:11,10:21:99:330,0,313
9    38016247    rs7037371    T    C    116.69    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.34;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377700    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:147,0,25
9    38068532    rs3750444    A    G    108.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.75;SNPEFF_AMINO_ACID_CHANGE=P37;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_38067926_38069210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377700    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:141,12,0
9    38395940    rs2228094    T    C    2328.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=I65;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_38395737_38398658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377698    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2361,193,0
9    38396065    rs2073478    G    T    1865.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_AMINO_ACID_CHANGE=R107L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_38395737_38398658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377698    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1898,141,0
9    38396502    rs4878199    G    A    2321.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.69;SNPEFF_AMINO_ACID_CHANGE=V253M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_38395737_38398658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377698    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2354,175,0
9    38397355    rs3043    G    C    160.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377698    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
9    38413159    rs7018644    T    G    199.19    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.107;QD=11.72;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377694    GT:AD:DP:GQ:PL    0/1:9,8:17:99:229,0,306
9    38414030    rs5897733    T    TCACA    374.13    PASS    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.412;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=168.0857;IndelType=I;MQ=59.11;MQ0=0;MQRankSum=-0.905;QD=14.39;ReadPosRankSum=-1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377694    GT:AD:DP:GQ:PL    0/1:19,5:26:99:413,0,521
9    38543009    rs2996377    A    C    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357072    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
9    38571130    rs12349568    C    A    139.07    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=13;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.6651;MQ=42.9;MQ0=0;MQRankSum=-1.369;QD=10.7;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=A166S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_38571119_38571198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:6,7:13:99:169,0,132
9    38571976    .    T    TTAAA    967.79    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.986;DP=47;FS=5.409;HRun=0;HaplotypeScore=177.1069;IndelType=I;MQ=49.06;MQ0=2;MQRankSum=-3.137;QD=15.36;ReadPosRankSum=-3.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:39,24:47:99:1007,0,1577
9    38572596    rs7027593    C    T    98.86    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=57.3;MQ0=0;MQRankSum=-1.776;QD=6.18;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:11,5:16:99:129,0,354
9    38572933    rs7028118    C    T    38.33    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=48.57;MQ0=1;MQRankSum=-2.166;QD=3.48;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:7,4:11:68.32:68,0,260
9    38572981    rs7044423    T    C    257.99    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.54;MQ0=0;MQRankSum=-1.736;QD=11.73;ReadPosRankSum=0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:13,9:22:99:288,0,472
9    38573141    rs1974262    T    A    108.42    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=19;Dels=0.0;FS=2.445;HRun=3;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.602;QD=5.71;ReadPosRankSum=1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:14,5:19:99:138,0,445
9    38575547    .    T    A    1636.29    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=3.93;DP=135;Dels=0.0;FS=2.237;HRun=2;HaplotypeScore=0.5784;MQ=59.24;MQ0=0;MQRankSum=0.421;QD=12.12;ReadPosRankSum=1.494;SNPEFF_AMINO_ACID_CHANGE=I85F;SNPEFF_CODON_CHANGE=Att/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_38575473_38575695;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:77,57:135:99:1666,0,2322
9    38575775    rs138739260    T    G    1214.75    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.97;DB;DP=78;Dels=0.0;FS=5.46;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.127;QD=15.57;ReadPosRankSum=-1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:33,45:78:99:1245,0,1157
9    38576999    rs3124034    G    A    523.19    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.085;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.17;MQ0=0;MQRankSum=0.606;QD=12.76;ReadPosRankSum=0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313339    GT:AD:DP:GQ:PL    0/1:22,19:41:99:553,0,715
9    38578153    rs2027241    A    G    539.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.343;DB;DP=42;Dels=0.0;FS=1.207;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=12.84;ReadPosRankSum=0.724;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399703    GT:AD:DP:GQ:PL    0/1:24,18:42:99:569,0,724
9    38586130    rs1415581    T    C    203.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.21;MQ0=0;MQRankSum=1.659;QD=10.2;ReadPosRankSum=0.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399703    GT:AD:DP:GQ:PL    0/1:12,8:20:99:234,0,434
9    38603131    rs3005823    G    A    1026.68    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=3.119;DB;DP=61;Dels=0.0;FS=4.482;HRun=1;HaplotypeScore=1.9066;MQ=57.68;MQ0=0;MQRankSum=-0.253;QD=16.83;ReadPosRankSum=1.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399703    GT:AD:DP:GQ:PL    0/1:28,33:61:99:1057,0,885
9    38615698    rs1832313    C    T    1207.27    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.972;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3893;MQ=52.44;MQ0=0;MQRankSum=-1.242;QD=12.58;ReadPosRankSum=-0.788;SNPEFF_AMINO_ACID_CHANGE=E130K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_38615591_38615764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399703    GT:AD:DP:GQ:PL    0/1:45,51:96:99:1237,0,1392
9    38615779    rs1765381    T    C    1179.56    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=69;Dels=0.0;FS=3.676;HRun=0;HaplotypeScore=0.9332;MQ=52.23;MQ0=2;MQRankSum=1.636;QD=17.1;ReadPosRankSum=0.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399703    GT:AD:DP:GQ:PL    0/1:30,39:69:99:1210,0,782
9    38620366    .    TCCGCGATCTCCCCCGCAAC    T    213.33    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=8;FS=3.31;HRun=0;HaplotypeScore=137.8394;IndelType=D;MQ=52.11;MQ0=0;MQRankSum=0.0;QD=26.67;ReadPosRankSum=-1.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM201A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377680    GT:AD:DP:GQ:PL    0/1:3,5:8:99:252,0,316
9    39085764    rs2150942    G    A    85.12    QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=2.295;DB;DP=105;Dels=0.0;FS=17.98;HRun=0;HaplotypeScore=0.0;MQ=47.39;MQ0=4;MQRankSum=-5.185;QD=0.81;ReadPosRankSum=0.907;SNPEFF_AMINO_ACID_CHANGE=A1056;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_39085733_39085820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377656    GT:AD:DP:GQ:PL    0/1:88,17:105:99:115,0,2462
9    39085808    .    T    C    172.97    QDFilter2    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=3.852;DP=105;Dels=0.0;FS=40.631;HRun=0;HaplotypeScore=0.6651;MQ=46.25;MQ0=8;MQRankSum=-6.168;QD=1.65;ReadPosRankSum=-0.045;SNPEFF_AMINO_ACID_CHANGE=T1042A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_39085733_39085820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377656    GT:AD:DP:GQ:PL    0/1:80,25:105:99:203,0,2350
9    39086695    rs2183892    T    C    933.33    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=41.04;MQ0=0;MQRankSum=-2.394;QD=10.14;ReadPosRankSum=0.253;SNPEFF_AMINO_ACID_CHANGE=Q1036;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_39084974_39086846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358144    GT:AD:DP:GQ:PL    0/1:53,39:92:99:963,0,1468
9    39086940    rs10814793    C    T    126.78    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.42;MQ0=5;QD=9.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297668    GT:AD:DP:GQ:PL    1/1:0,12:13:15.04:160,15,0
9    39088644    .    T    C    157.67    MQFilter40;QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DP=220;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=10.5;MQ0=175;MQRankSum=0.365;QD=0.72;ReadPosRankSum=-0.491;SNPEFF_AMINO_ACID_CHANGE=E911G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_39088420_39088644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358144    GT:AD:DP:GQ:PL    0/1:157,63:220:99:188,0,459
9    39088683    .    G    T    94.72    MQFilter40;QDFilter2    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DP=143;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.6;MQ0=105;MQRankSum=0.017;QD=0.66;ReadPosRankSum=1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297668    GT:AD:DP:GQ:PL    0/1:104,39:143:99:125,0,416
9    39088725    rs149635015    A    G    341.04    MQFilter40    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=2.91;DB;DP=86;Dels=0.0;FS=4.228;HRun=1;HaplotypeScore=0.0;MQ=24.12;MQ0=42;MQRankSum=2.583;QD=3.92;ReadPosRankSum=-1.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297668    GT:AD:DP:GQ:PL    0/1:62,24:86:99:371,0,693
9    39100338    rs6476771    C    T    136.79    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.05;MQ0=0;MQRankSum=-0.295;QD=9.12;ReadPosRankSum=1.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443583    GT:AD:DP:GQ:PL    0/1:9,6:15:99:167,0,311
9    39103743    rs7852039    C    T    462.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.427;DB;DP=36;Dels=0.0;FS=3.377;HRun=0;HaplotypeScore=1.9638;MQ=47.35;MQ0=0;MQRankSum=0.933;QD=12.86;ReadPosRankSum=0.301;SNPEFF_AMINO_ACID_CHANGE=R757H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_39103741_39103911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358144    GT:AD:DP:GQ:PL    0/1:18,18:36:99:493,0,599
9    39118196    rs146296802    C    A    2134.12    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.754;DB;DP=204;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7885;MQ=18.43;MQ0=116;MQRankSum=-1.651;QD=10.46;ReadPosRankSum=1.243;SNPEFF_AMINO_ACID_CHANGE=G620V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_39117920_39118256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323947    GT:AD:DP:GQ:PL    1/1:86,118:204:99:2167,176,0
9    39118205    rs113579706    G    T    2109.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=204;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=22.09;MQ0=105;QD=10.34;SNPEFF_AMINO_ACID_CHANGE=S617Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_39117920_39118256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323947    GT:AD:DP:GQ:PL    1/1:77,127:204:99:2142,228,0
9    39118207    rs148861698    A    G    2123.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=209;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=23.46;MQ0=104;QD=10.16;SNPEFF_AMINO_ACID_CHANGE=T616;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_39117920_39118256;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323947    GT:AD:DP:GQ:PL    1/1:78,131:209:99:2157,228,0
9    39118391    rs2721439    T    C    72.41    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.12;MQ0=2;MQRankSum=-2.637;QD=5.57;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297668    GT:AD:DP:GQ:PL    0/1:6,7:13:99:102,0,156
9    39133168    rs6476772    A    G    78.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.99;MQ0=0;MQRankSum=-0.727;QD=19.63;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297668    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:109,0,29
9    39171241    rs190227535    T    C    332.67    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.971;DB;DP=40;Dels=0.0;FS=4.449;HRun=1;HaplotypeScore=1.8245;MQ=48.98;MQ0=0;MQRankSum=0.751;QD=8.32;ReadPosRankSum=-1.432;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377653    GT:AD:DP:GQ:PL    0/1:26,14:40:99:363,0,823
9    39456961    .    C    T    116.52    MQFilter40;QDFilter2    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.47;MQ0=46;MQRankSum=-0.107;QD=1.74;ReadPosRankSum=0.604;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2173L22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266116    GT:AD:DP:GQ:PL    0/1:35,32:67:99:147,0,213
9    40292932    .    T    C    354.34    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.614;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9468;MQ=32.71;MQ0=5;MQRankSum=-5.451;QD=7.7;ReadPosRankSum=0.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451450    GT:AD:DP:GQ:PL    0/1:23,23:46:99:384,0,801
9    40293048    .    T    G    528.41    FSFilter60;MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=4.4;DP=182;Dels=0.0;FS=97.754;HRun=1;HaplotypeScore=0.734;MQ=33.81;MQ0=42;MQRankSum=-6.228;QD=2.9;ReadPosRankSum=3.353;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451450    GT:AD:DP:GQ:PL    0/1:104,78:182:99:558,0,3133
9    40293075    rs77864731    T    C    742.95    MQFilter40    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.013;DB;DP=243;Dels=0.0;FS=4.087;HRun=1;HaplotypeScore=3.2798;MQ=31.47;MQ0=43;MQRankSum=-3.592;QD=3.04;ReadPosRankSum=-1.541;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451450    GT:AD:DP:GQ:PL    0/1:169,74:243:99:773,0,4254
9    40293086    rs77921801    G    T    801.51    MQFilter40    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.74;DB;DP=250;DS;Dels=0.0;FS=5.358;HRun=2;HaplotypeScore=4.4639;MQ=30.27;MQ0=58;MQRankSum=-3.329;QD=3.21;ReadPosRankSum=-1.347;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451450    GT:AD:DP:GQ:PL    0/1:171,79:250:99:832,0,3835
9    40332521    rs3011136    T    C    43.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=14.2;MQ0=3;QD=5.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333554    GT:AD:DP:GQ:PL    1/1:0,8:8:8.99:75,9,0
9    40332613    rs79079473    C    T    113.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.01;MQ0=3;QD=6.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333554    GT:AD:DP:GQ:PL    1/1:0,17:17:15.02:146,15,0
9    40332625    rs78929619    G    T    216.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.36;MQ0=4;QD=9.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333554    GT:AD:DP:GQ:PL    1/1:0,23:23:26.99:249,27,0
9    40332626    rs76282729    C    T    214.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.43;MQ0=4;QD=8.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333554    GT:AD:DP:GQ:PL    1/1:0,24:24:26.99:247,27,0
9    40332852    rs62551704    A    T    1677.22    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.635;DB;DP=99;Dels=0.0;FS=5.073;HRun=1;HaplotypeScore=0.0;MQ=46.53;MQ0=1;MQRankSum=-1.183;QD=16.94;ReadPosRankSum=1.979;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333554    GT:AD:DP:GQ:PL    0/1:36,63:99:99:1707,0,1119
9    40333018    rs148370086    T    C    574.19    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.502;DB;DP=77;Dels=0.0;FS=5.895;HRun=1;HaplotypeScore=3.4347;MQ=40.14;MQ0=7;MQRankSum=-5.43;QD=7.46;ReadPosRankSum=-1.455;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-111G23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333554    GT:AD:DP:GQ:PL    0/1:43,34:77:99:604,0,1370
9    40497434    .    A    G    33.11    MQFilter40;QDFilter2    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.8;MQ0=19;MQRankSum=0.727;QD=1.44;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-292B8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377651    GT:AD:DP:GQ:PL    0/1:13,10:23:15.67:63,0,16
9    40503105    .    G    C    191.26    MQFilter40    AC=2;AF=1.00;AN=2;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=24.37;MQ0=0;QD=11.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-292B8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377651    GT:AD:DP:GQ:PL    1/1:1,16:17:18.06:224,18,0
9    40610136    rs140999672    G    A    1174.37    MQFilter40    AB=0.232;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5494;MQ=21.12;MQ0=13;MQRankSum=2.95;QD=11.86;ReadPosRankSum=-0.148;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-292B8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377651    GT:AD:DP:GQ:PL    0/1:23,76:99:99:1204,0,134
9    40701817    .    G    A    75.58    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=8.64;MQ0=34;QD=1.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356699    GT:AD:DP:GQ:PL    1/1:7,49:56:14.90:108,15,0
9    40705798    .    C    A    1801.61    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=247;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=13.11;MQ0=132;MQRankSum=0.972;QD=7.29;ReadPosRankSum=1.702;SNPEFF_AMINO_ACID_CHANGE=P1152Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_40702652_40706537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356699    GT:AD:DP:GQ:PL    1/1:76,171:247:99:1835,204,0
9    40715869    .    T    C    1208.38    MQFilter40    AC=2;AF=1.00;AN=2;DP=174;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8824;MQ=16.55;MQ0=45;QD=6.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM74A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355345    GT:AD:DP:GQ:PL    1/1:0,174:174:99:1241,114,0
9    40715882    rs78730316    G    T    814.91    HaplotypeScoreFilter13;MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=205;Dels=0.0;FS=12.673;HRun=0;HaplotypeScore=20.6907;MQ=21.12;MQ0=40;MQRankSum=-0.332;QD=3.98;ReadPosRankSum=-1.404;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM74A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355345    GT:AD:DP:GQ:PL    0/1:91,114:205:99:845,0,735
9    40715896    rs72509212    T    A    2002.13    HaplotypeScoreFilter13;MQFilter40    AB=0.376;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.977;DB;DP=250;Dels=0.0;FS=35.065;HRun=0;HaplotypeScore=17.4681;MQ=24.32;MQ0=37;MQRankSum=1.59;QD=8.01;ReadPosRankSum=-3.315;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM74A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355345    GT:AD:DP:GQ:PL    0/1:94,156:250:99:2032,0,764
9    40715922    .    GAA    G    940.02    PASS    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=6.877;DP=105;DS;FS=23.284;HRun=3;HaplotypeScore=1244.2491;IndelType=D;MQ=23.27;MQ0=51;MQRankSum=0.506;QD=3.76;ReadPosRankSum=-0.147;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM74A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355345    GT:AD:DP:GQ:PL    0/1:191,59:105:99:979,0,3982
9    40715937    .    C    A    397.99    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DP=249;DS;Dels=0.0;FS=19.397;HRun=0;HaplotypeScore=25.1379;MQ=23.54;MQ0=48;MQRankSum=-0.326;QD=1.6;ReadPosRankSum=-3.896;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM74A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355345    GT:AD:DP:GQ:PL    0/1:204,45:249:99:428,0,2494
9    40715944    rs62566172    A    G    196.30    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.989;DB;DP=250;DS;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=147.8628;MQ=26.72;MQ0=34;MQRankSum=-0.003;QD=0.79;ReadPosRankSum=-3.894;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM74A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355345    GT:AD:DP:GQ:PL    0/1:198,49:250:99:226,0,3040
9    40715951    .    ACGTG    A    446.71    QDFilter2    AB=0.926;AC=1;AF=0.50;AN=2;BaseQRankSum=6.72;DP=157;DS;FS=28.053;HRun=0;HaplotypeScore=1401.1293;IndelType=D;MQ=27.65;MQ0=34;MQRankSum=0.845;QD=1.79;ReadPosRankSum=-0.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM74A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355345    GT:AD:DP:GQ:PL    0/1:230,20:157:99:486,0,11722
9    40772067    .    C    T    538.43    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.14;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.01;MQ0=83;MQRankSum=-0.328;QD=4.49;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF658;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441795    GT:AD:DP:GQ:PL    1/1:43,77:120:38.34:571,38,0
9    40773337    rs78487056    C    T    1896.35    MQFilter40    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=1.846;DB;DP=230;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.849;MQ=23.56;MQ0=23;MQRankSum=0.305;QD=8.25;ReadPosRankSum=0.359;SNPEFF_AMINO_ACID_CHANGE=K646;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_40771900_40775036;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF658;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377626    GT:AD:DP:GQ:PL    0/1:124,106:230:99:1926,0,1932
9    40784183    rs4339693    A    G    521.03    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.409;DB;DP=58;Dels=0.0;FS=3.98;HRun=2;HaplotypeScore=0.9734;MQ=45.28;MQ0=0;MQRankSum=-4.078;QD=8.98;ReadPosRankSum=0.761;SNPEFF_AMINO_ACID_CHANGE=P52;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_40784107_40784202;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF658;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441795    GT:AD:DP:GQ:PL    0/1:36,22:58:99:551,0,1033
9    41954461    .    A    T    228.14    MQFilter40    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.875;DP=66;Dels=0.0;FS=5.775;HRun=0;HaplotypeScore=1.9312;MQ=24.32;MQ0=12;MQRankSum=-5.741;QD=3.46;ReadPosRankSum=1.961;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX664615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355952    GT:AD:DP:GQ:PL    0/1:20,46:66:99:258,0,570
9    41954571    rs79451922    G    A    37.43    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=3.403;DB;DP=242;Dels=0.0;FS=21.015;HRun=0;HaplotypeScore=33.3884;MQ=28.34;MQ0=23;MQRankSum=-5.191;QD=0.15;ReadPosRankSum=-0.409;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX664615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355952    GT:AD:DP:GQ:PL    0/1:187,54:242:67.43:67,0,3669
9    41954579    rs62539310    G    A    226.29    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=250;DS;Dels=0.0;FS=0.857;HRun=0;HaplotypeScore=33.8756;MQ=27.88;MQ0=26;MQRankSum=-0.073;QD=0.91;ReadPosRankSum=-0.178;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX664615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355952    GT:AD:DP:GQ:PL    0/1:204,46:250:99:256,0,3656
9    41954644    rs28735758    G    A    971.31    MQFilter40    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.638;DB;DP=218;DS;Dels=0.0;FS=8.014;HRun=6;HaplotypeScore=4.584;MQ=22.88;MQ0=57;MQRankSum=2.769;QD=4.44;ReadPosRankSum=-0.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX664615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355952    GT:AD:DP:GQ:PL    0/1:151,67:218:99:1001,0,1514
9    41954658    rs28406689    G    A    637.02    MQFilter40    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=179;DS;Dels=0.0;FS=12.793;HRun=2;HaplotypeScore=1.7753;MQ=22.05;MQ0=55;MQRankSum=1.443;QD=3.56;ReadPosRankSum=-1.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX664615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355952    GT:AD:DP:GQ:PL    0/1:129,50:179:99:667,0,1251
9    41954665    rs28758397    C    A    499.62    MQFilter40    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=3.688;DB;DP=166;DS;Dels=0.0;FS=11.504;HRun=0;HaplotypeScore=1.5449;MQ=23.07;MQ0=53;MQRankSum=0.576;QD=3.01;ReadPosRankSum=-1.142;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX664615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355952    GT:AD:DP:GQ:PL    0/1:122,44:166:99:530,0,1140
9    41954776    rs28706047    C    G    202.70    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.909;DB;DP=41;Dels=0.0;FS=2.91;HRun=0;HaplotypeScore=0.8667;MQ=43.42;MQ0=1;MQRankSum=-4.722;QD=4.94;ReadPosRankSum=-1.951;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX664615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355952    GT:AD:DP:GQ:PL    0/1:27,14:41:99:233,0,805
9    41954879    rs28425508    C    T    858.79    MQFilter40    AB=0.302;AC=1;AF=0.50;AN=2;BaseQRankSum=2.075;DB;DP=53;Dels=0.0;FS=1.639;HRun=0;HaplotypeScore=0.0;MQ=32.06;MQ0=10;MQRankSum=-0.911;QD=16.2;ReadPosRankSum=-0.075;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BX664615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355952    GT:AD:DP:GQ:PL    0/1:16,37:53:99:889,0,134
9    41962410    rs28474905    T    A    307.04    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9203;MQ=41.46;MQ0=0;MQRankSum=0.099;QD=17.06;ReadPosRankSum=-0.591;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-204M4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454645    GT:AD:DP:GQ:PL    0/1:5,13:18:99:337,0,107
9    41962602    .    G    C    418.42    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=0.011;DP=245;DS;Dels=0.02;FS=3.109;HRun=0;HaplotypeScore=37.525;MQ=39.81;MQ0=10;MQRankSum=-0.734;QD=1.68;ReadPosRankSum=-0.949;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-204M4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454645    GT:AD:DP:GQ:PL    0/1:182,36:245:99:448,0,4342
9    41962740    .    C    T    1744.76    MQFilter40    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.619;DP=162;DS;Dels=0.0;FS=0.939;HRun=0;HaplotypeScore=2.7673;MQ=35.52;MQ0=18;MQRankSum=4.344;QD=10.77;ReadPosRankSum=-0.109;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-204M4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454645    GT:AD:DP:GQ:PL    0/1:94,68:162:99:1775,0,1651
9    41962752    .    TG    T    266.95    QDFilter2    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DP=117;FS=4.389;HRun=1;HaplotypeScore=1031.6654;IndelType=D;MQ=37.78;MQ0=11;MQRankSum=-5.833;QD=1.96;ReadPosRankSum=0.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-204M4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454645    GT:AD:DP:GQ:PL    0/1:110,24:117:99:306,0,1270
9    41962754    .    AAAC    A    263.84    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DP=116;FS=8.183;HRun=0;HaplotypeScore=1150.5735;IndelType=D;MQ=37.54;MQ0=11;MQRankSum=-5.623;QD=1.95;ReadPosRankSum=0.571;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-204M4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454645    GT:AD:DP:GQ:PL    0/1:111,24:116:99:303,0,4653
9    41962799    rs142524731    G    T    1480.33    MQFilter40    AB=0.209;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.496;DB;DP=86;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=39.04;MQ0=12;MQRankSum=-1.329;QD=17.21;ReadPosRankSum=0.409;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-204M4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454645    GT:AD:DP:GQ:PL    0/1:18,68:86:99:1510,0,465
9    41963811    .    T    A    1178.64    MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=0.12;DP=250;DS;Dels=0.0;FS=0.995;HRun=5;HaplotypeScore=1.9048;MQ=27.66;MQ0=17;MQRankSum=1.239;QD=4.71;ReadPosRankSum=-1.208;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-204M4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454645    GT:AD:DP:GQ:PL    0/1:169,81:250:99:1209,0,2816
9    42368600    rs75596179    C    T    188.81    MQFilter40    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.22;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6421;MQ=22.65;MQ0=6;MQRankSum=-0.176;QD=2.55;ReadPosRankSum=-0.044;SNPEFF_AMINO_ACID_CHANGE=A62;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_42368303_42368617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377601    GT:AD:DP:GQ:PL    0/1:56,18:74:99:219,0,957
9    42368614    .    A    G    58.48    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DP=56;Dels=0.0;FS=2.566;HRun=0;HaplotypeScore=1.7262;MQ=22.61;MQ0=7;MQRankSum=-1.989;QD=1.04;ReadPosRankSum=-0.819;SNPEFF_AMINO_ACID_CHANGE=H67R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_42368303_42368617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377601    GT:AD:DP:GQ:PL    0/1:42,14:56:88.47:88,0,766
9    42471955    rs140081055    G    A    244.67    MQFilter40    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.664;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=18.34;MQ0=41;MQRankSum=-0.615;QD=3.76;ReadPosRankSum=1.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CYP4F45P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433629    GT:AD:DP:GQ:PL    0/1:45,20:65:99:275,0,373
9    43029797    .    G    A    208.39    MQFilter40    AC=2;AF=1.00;AN=2;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.35;MQ0=7;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-399F4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449578    GT:AD:DP:GQ:PL    1/1:7,6:13:18.06:241,18,0
9    43029996    .    T    C    119.19    MQFilter40    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.34;MQ0=33;MQRankSum=0.742;QD=2.98;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-399F4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449578    GT:AD:DP:GQ:PL    0/1:29,11:40:15.38:149,0,15
9    43030114    .    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.67;MQ0=7;QD=3.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-399F4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449578    GT:AD:DP:GQ:PL    1/1:7,2:9:6.02:67,6,0
9    43135183    .    C    T    202.81    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.859;DP=36;Dels=0.0;FS=4.172;HRun=2;HaplotypeScore=0.7887;MQ=24.06;MQ0=0;MQRankSum=-1.234;QD=5.63;ReadPosRankSum=-0.712;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254835    GT:AD:DP:GQ:PL    0/1:24,12:36:99:233,0,461
9    43624925    .    A    G    147.35    MQFilter40    AC=2;AF=1.00;AN=2;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.82;MQ0=19;QD=2.59;SNPEFF_AMINO_ACID_CHANGE=H1254;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43624507_43628378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332857    GT:AD:DP:GQ:PL    1/1:0,55:57:18.02:180,18,0
9    43625382    rs143826416    G    A    2720.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4727;MQ=19.17;MQ0=33;QD=15.63;SNPEFF_AMINO_ACID_CHANGE=P1102L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43624507_43628378;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332857    GT:AD:DP:GQ:PL    1/1:6,168:174:99:2753,326,0
9    43627428    rs11261835    G    A    3960.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=199;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4715;MQ=34.97;MQ0=39;QD=19.9;SNPEFF_AMINO_ACID_CHANGE=P420L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43624507_43628378;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332857    GT:AD:DP:GQ:PL    1/1:32,166:199:99:3960,316,0
9    43628695    .    C    G    194.73    MQFilter40    AB=0.04;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=19.98;MQ0=11;MQRankSum=-1.736;QD=7.79;ReadPosRankSum=1.488;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000496386    GT:AD:DP:GQ:PL    0/1:1,24:25:5.23:224,0,5
9    43629110    rs5021446    T    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.37;MQ0=7;QD=5.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332857    GT:AD:DP:GQ:PL    1/1:5,8:13:9.02:100,9,0
9    43629383    .    C    T    1948.52    MQFilter40    AC=2;AF=1.00;AN=2;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.63;MQ0=0;QD=27.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332857    GT:AD:DP:GQ:PL    1/1:0,70:70:99:1982,165,0
9    43629424    rs3012213    T    C    946.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.78;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332857    GT:AD:DP:GQ:PL    1/1:0,32:32:81.17:980,81,0
9    43629553    rs10907644    G    A    117    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.17;MQ0=1;QD=23.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332857    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:149,12,0
9    43630712    rs62556735    A    G    685.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.33;MQ0=1;QD=22.11;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM75A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496386    GT:AD:DP:GQ:PL    1/1:0,31:31:66.16:718,66,0
9    43685298    rs74568672    G    T    74.03    MQFilter40    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.366;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.36;MQ0=7;MQRankSum=2.661;QD=2.96;ReadPosRankSum=-0.197;SNPEFF_AMINO_ACID_CHANGE=A2S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43684910_43685379;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276974    GT:AD:DP:GQ:PL    0/1:18,7:25:99:104,0,220
9    43816656    .    T    C    151.80    MQFilter40    AC=2;AF=1.00;AN=2;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.22;MQ0=10;QD=5.06;SNPEFF_AMINO_ACID_CHANGE=S254;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43816637_43816821;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276974    GT:AD:DP:GQ:PL    1/1:0,30:30:21:185,21,0
9    43818062    rs78142446    T    A    1346.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.46;MQ0=1;QD=26.4;SNPEFF_AMINO_ACID_CHANGE=S317T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43818041_43818184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276974    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1379,141,0
9    43822668    rs143137380    C    T    839.02    MQFilter40    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.405;DB;DP=125;Dels=0.0;FS=1.824;HRun=4;HaplotypeScore=0.8321;MQ=19.06;MQ0=37;MQRankSum=-2.481;QD=6.71;ReadPosRankSum=0.286;SNPEFF_AMINO_ACID_CHANGE=L408F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43822518_43822779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:65,60:125:99:869,0,718
9    43822686    .    C    A    665.28    MQFilter40    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=4.488;DP=123;Dels=0.0;FS=0.819;HRun=2;HaplotypeScore=0.9469;MQ=18.99;MQ0=34;MQRankSum=1.781;QD=5.41;ReadPosRankSum=-0.809;SNPEFF_AMINO_ACID_CHANGE=R414S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43822518_43822779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:69,54:123:99:695,0,867
9    43822704    .    G    A    429.40    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.136;DP=105;Dels=0.0;FS=1.134;HRun=0;HaplotypeScore=0.0;MQ=16.67;MQ0=44;MQRankSum=1.773;QD=4.09;ReadPosRankSum=-0.861;SNPEFF_AMINO_ACID_CHANGE=V420I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43822518_43822779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:63,42:105:99:459,0,558
9    43822762    .    C    T    97.86    MQFilter40;QDFilter2    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.341;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=8.99;MQ0=75;MQRankSum=-0.246;QD=0.98;ReadPosRankSum=-1.341;SNPEFF_AMINO_ACID_CHANGE=P439L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43822518_43822779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:71,29:100:99:128,0,153
9    43828112    .    A    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.46;MQ0=2;QD=13.65;SNPEFF_AMINO_ACID_CHANGE=V456;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43828078_43828221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:100,9,0
9    43849637    rs71243871    G    A    344.61    MQFilter40    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.84;MQ0=2;MQRankSum=-0.718;QD=16.41;ReadPosRankSum=1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:8,13:21:99:375,0,210
9    43849812    rs141780724    T    G    132.87    MQFilter40;QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=91;Dels=0.0;FS=1.725;HRun=1;HaplotypeScore=7.6568;MQ=22.37;MQ0=38;MQRankSum=0.859;QD=1.46;ReadPosRankSum=-0.973;SNPEFF_AMINO_ACID_CHANGE=C573G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43849745_43849851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:70,21:91:99:163,0,814
9    43849817    rs4063192    A    G    276.61    MQFilter40    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=92;Dels=0.0;FS=5.502;HRun=2;HaplotypeScore=7.6568;MQ=23.18;MQ0=36;MQRankSum=-0.362;QD=3.01;ReadPosRankSum=0.525;SNPEFF_AMINO_ACID_CHANGE=L574;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_43849745_43849851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:51,41:92:99:307,0,782
9    43849874    .    G    A    227.78    MQFilter40    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.819;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.79;MQ0=57;MQRankSum=-0.92;QD=2.13;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:60,47:107:99:258,0,703
9    43850050    .    G    A    100.74    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.24;MQ0=4;MQRankSum=-0.729;QD=7.75;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:5,7:13:99:131,0,159
9    43860959    rs145957320    G    C    73.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.23;MQ0=1;MQRankSum=-1.92;QD=8.13;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341990    GT:AD:DP:GQ:PL    0/1:3,6:9:64:103,0,64
9    44059610    rs115470362    G    A    401.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CR848007.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442354    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:435,39,0
9    44059972    rs78376434    C    T    133.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=17.98;MQ0=2;QD=9.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CR848007.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442354    GT:AD:DP:GQ:PL    1/1:0,14:14:18.02:166,18,0
9    44060029    rs62536299    T    A    677.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.11;MQ0=13;QD=13.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CR848007.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442354    GT:AD:DP:GQ:PL    1/1:1,50:51:80.98:711,81,0
9    44060416    rs62536301    G    A    329.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.33;MQ0=10;QD=11.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CR848007.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442354    GT:AD:DP:GQ:PL    1/1:0,28:28:36.01:363,36,0
9    44060423    rs62536302    T    G    381.29    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.86;MQ0=10;QD=12.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CR848007.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442354    GT:AD:DP:GQ:PL    1/1:0,31:31:39.02:414,39,0
9    44067586    rs113648218    A    T    544.49    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.24;MQ0=4;MQRankSum=0.679;QD=19.45;ReadPosRankSum=0.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CR848007.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442354    GT:AD:DP:GQ:PL    1/1:6,22:28:23.57:577,24,0
9    44067719    rs62537364    A    G    1897.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=26.19;MQ0=4;QD=20.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CR848007.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442354    GT:AD:DP:GQ:PL    1/1:0,92:92:99:1930,192,0
9    44076524    rs62537404    T    C    6800.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=229;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7318;MQ=46.85;MQ0=0;QD=29.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:1,228:229:99:6800,536,0
9    44076632    rs62537405    G    A    4190.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6537;MQ=30.02;MQ0=6;QD=24.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,168:168:99:4190,373,0
9    44076748    rs62537407    C    T    6079.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=2;QD=33.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,180:180:99:6079,454,0
9    44076855    rs62537408    G    T    2102.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.07;MQ0=19;QD=20.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,105:105:99:2135,192,0
9    44076871    rs62537409    C    T    1996.22    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.148;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7825;MQ=22.82;MQ0=26;MQRankSum=2.676;QD=17.82;ReadPosRankSum=2.657;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:5,107:112:99:2029,164,0
9    44077212    .    G    C    368.31    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=204;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.8;MQ0=131;QD=1.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:98,104:204:50.81:401,51,0
9    44077213    .    A    T    368.31    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=204;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.8;MQ0=131;QD=1.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:100,104:204:50.81:401,51,0
9    44078408    rs186439180    T    G    404.89    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.055;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8292;MQ=15.98;MQ0=8;MQRankSum=-0.527;QD=7.5;ReadPosRankSum=1.582;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:7,47:54:29.24:438,29,0
9    44078712    rs72707531    T    C    161.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.68;MQ0=0;QD=11.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,14:14:23.94:194,24,0
9    44078713    rs72707532    G    A    196.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.92;MQ0=0;QD=14.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,14:14:26.95:230,27,0
9    44080094    rs62537411    C    T    596.66    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.043;DB;DP=54;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=22.63;MQ0=25;MQRankSum=1.678;QD=11.05;ReadPosRankSum=-0.904;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:14,40:54:28.45:630,28,0
9    44084157    rs62538265    T    C    313.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.28;MQ0=0;MQRankSum=1.423;QD=28.49;ReadPosRankSum=-1.107;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:1,10:11:27.08:346,27,0
9    44084306    rs144188085    C    G    316.51    HaplotypeScoreFilter13;MQFilter40    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=0.357;DB;DP=103;Dels=0.0;FS=7.008;HRun=0;HaplotypeScore=23.483;MQ=28.89;MQ0=19;MQRankSum=-1.457;QD=3.07;ReadPosRankSum=0.965;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:82,21:103:99:347,0,1248
9    44084399    .    A    ATAATC    828.11    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=0;HaplotypeScore=70.1325;IndelType=I;MQ=28.29;MQ0=0;QD=69.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:5,7:11:33.11:870,33,0
9    44090283    rs149471963    T    C    351.71    MQFilter40;QDFilter2    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=3.3;DB;DP=189;Dels=0.0;FS=5.634;HRun=2;HaplotypeScore=3.7599;MQ=19.55;MQ0=21;MQRankSum=0.753;QD=1.86;ReadPosRankSum=0.816;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:139,50:189:99:382,0,1003
9    44090322    rs146431367    TC    T    694.58    PASS    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=7.204;DB;DP=107;DS;FS=1.073;HRun=1;HaplotypeScore=430.4128;IndelType=D;MQ=20.96;MQ0=13;MQRankSum=0.982;QD=2.79;ReadPosRankSum=0.907;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:194,55:107:99:734,0,3358
9    44090347    rs142683385    G    T    171.06    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.274;DB;DP=246;DS;Dels=0.0;FS=1.37;HRun=0;HaplotypeScore=36.7612;MQ=18.96;MQ0=37;MQRankSum=0.107;QD=0.7;ReadPosRankSum=-2.544;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:200,46:246:99:201,0,1676
9    44090537    .    G    A    224.71    MQFilter40;QDFilter2    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DP=163;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1526;MQ=10.58;MQ0=119;MQRankSum=1.382;QD=1.38;ReadPosRankSum=-0.795;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:132,30:163:99:255,0,276
9    44090648    rs67169668    G    T    1015.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=38.18;MQ0=0;QD=35.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1048,81,0
9    44093210    rs62538289    T    C    859.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6643;MQ=44.99;MQ0=1;QD=31.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,27:27:75.15:893,75,0
9    44093509    rs71493015    A    G    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=23.15;MQ0=2;QD=16.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:167,15,0
9    44100021    .    G    A    108.68    MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=1.349;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=13.24;MQ0=18;MQRankSum=-0.571;QD=2.42;ReadPosRankSum=0.208;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:26,19:45:45.10:139,0,45
9    44109174    rs145089083    TAAC    T    372.42    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=69.0414;IndelType=D;MQ=15.33;MQ0=26;MQRankSum=1.239;QD=8.66;ReadPosRankSum=1.468;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:20,23:13:99:411,0,261
9    44109365    .    T    TATC    290.38    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DP=11;FS=0.0;HRun=0;HaplotypeScore=35.9105;IndelType=I;MQ=30.71;MQ0=2;MQRankSum=-0.742;QD=20.74;ReadPosRankSum=0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:8,4:11:20.52:329,0,21
9    44109637    rs62539263    G    A    124.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.44;MQ0=0;QD=20.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:157,12,0
9    44110237    rs62539264    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    44110749    rs62539265    A    G    559.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.29;MQ0=0;QD=37.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:592,45,0
9    44114365    .    G    A    431.99    MQFilter40    AC=2;AF=1.00;AN=2;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.29;MQ0=22;QD=10.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:15,25:40:42.09:465,42,0
9    44114659    rs28418601    T    C    2823.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=25.48;MQ0=15;QD=22.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:1,125:126:99:2857,262,0
9    44114697    rs28453972    A    G    1084.88    MQFilter40    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.486;DB;DP=109;Dels=0.0;FS=0.813;HRun=0;HaplotypeScore=1.9877;MQ=30.03;MQ0=8;MQRankSum=-1.268;QD=9.95;ReadPosRankSum=0.187;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:54,55:109:99:1115,0,1266
9    44118161    rs28395168    C    A    210.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.5;MQ0=0;QD=35.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
9    44118172    rs28612439    C    T    223.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.97;MQ0=0;QD=31.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:256,21,0
9    44118181    rs62539270    G    A    59.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.68;MQ0=0;MQRankSum=-1.098;QD=5.93;ReadPosRankSum=-1.668;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    0/1:5,5:10:89.31:89,0,167
9    44118281    rs28707204    T    C    1190.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.8;MQ0=0;QD=24.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1223,102,0
9    44118498    rs28610048    G    C    506.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=28.67;MQ0=4;QD=16.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,31:31:45.13:540,45,0
9    44120079    rs28394652    C    A    80.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.13;MQ0=0;QD=20.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402318    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
9    44120127    rs28474690    T    C    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=BX649563.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415115    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
9    44120178    rs28537071    T    C    285.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.29;MQ0=3;QD=23.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=BX649563.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415115    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:319,27,0
9    44120405    rs28651802    C    G    484.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.84;MQ0=0;QD=30.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=BX649563.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415115    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:517,39,0
9    44172814    rs1944245    C    A    253.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.46;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BX649563.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377553    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:287,24,0
9    44174605    rs28422013    C    T    639.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.34;MQ0=1;QD=26.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BX649563.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377553    GT:AD:DP:GQ:PL    1/1:1,22:23:57.14:673,57,0
9    44175535    rs55633393    T    C    101    MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.558;DB;DP=30;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=28.68;MQ0=13;MQRankSum=1.357;QD=3.37;ReadPosRankSum=0.955;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BX649563.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377553    GT:AD:DP:GQ:PL    0/1:23,7:30:99:131,0,271
9    44401960    rs147403328    G    A    635.47    MQFilter40    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=46;Dels=0.0;FS=7.944;HRun=0;HaplotypeScore=0.5784;MQ=26.65;MQ0=3;MQRankSum=0.246;QD=13.81;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-475I24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428895    GT:AD:DP:GQ:PL    0/1:14,32:46:99:665,0,229
9    44873756    rs11263337    T    G    212.72    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=16.36;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-160N1.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377548    GT:AD:DP:GQ:PL    0/1:4,9:13:99:243,0,130
9    44874018    rs75521831    A    G    125.34    QDFilter2    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.911;DB;DP=76;Dels=0.0;FS=4.674;HRun=1;HaplotypeScore=3.0111;MQ=53.7;MQ0=1;MQRankSum=-5.62;QD=1.65;ReadPosRankSum=3.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-160N1.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377548    GT:AD:DP:GQ:PL    0/1:62,14:76:99:155,0,2135
9    44874071    rs74977853    C    G    123.01    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.624;DB;DP=75;Dels=0.0;FS=4.848;HRun=0;HaplotypeScore=3.9497;MQ=53.81;MQ0=0;MQRankSum=-5.62;QD=1.64;ReadPosRankSum=-4.514;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-160N1.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377548    GT:AD:DP:GQ:PL    0/1:62,13:75:99:153,0,2145
9    44874105    rs4978256    G    A    1899.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8245;MQ=55.46;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-160N1.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377548    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1933,150,0
9    45080475    .    C    T    145.60    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=16.4;MQ0=12;MQRankSum=2.829;QD=2.91;ReadPosRankSum=-1.498;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,15:50:37.89:176,0,38
9    45119701    rs150412763    G    T    51.32    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=25.66;MQ0=5;MQRankSum=-0.55;QD=4.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,7:12:81.31:81,0,89
9    45119743    rs146117633    A    G    121.30    MQFilter40    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.43;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=32.01;MQ0=5;MQRankSum=-3.331;QD=3.03;ReadPosRankSum=1.595;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,17:40:99:151,0,725
9    45119760    rs147646557    A    C    283.82    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.59;MQ0=5;MQRankSum=-4.896;QD=5.16;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,25:55:99:314,0,920
9    45119807    rs76571445    A    C    453.36    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=92;Dels=0.0;FS=8.841;HRun=0;HaplotypeScore=0.8321;MQ=30.6;MQ0=20;MQRankSum=-3.399;QD=4.93;ReadPosRankSum=2.128;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:52,40:92:99:483,0,1198
9    45119816    rs112606101    C    G    534.38    MQFilter40    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.87;DB;DP=108;Dels=0.0;FS=11.198;HRun=1;HaplotypeScore=0.8321;MQ=28.2;MQ0=29;MQRankSum=-3.836;QD=4.95;ReadPosRankSum=1.121;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:58,50:108:99:564,0,1163
9    45119859    rs144504798    A    T    380.09    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.492;DB;DP=132;Dels=0.0;FS=3.058;HRun=0;HaplotypeScore=1.8317;MQ=20.1;MQ0=78;MQRankSum=-1.069;QD=2.88;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:84,48:132:99:410,0,749
9    45120125    rs9650801    T    C    1464.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.6;MQ0=18;QD=22.19;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1498,126,0
9    45120162    rs60654905    A    G    598.20    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.774;DB;DP=112;Dels=0.0;FS=14.478;HRun=0;HaplotypeScore=0.0;MQ=41.02;MQ0=17;MQRankSum=-1.948;QD=5.34;ReadPosRankSum=-0.147;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:80,32:112:99:628,0,2006
9    45120269    .    C    T    1418.35    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=52.57;MQ0=5;MQRankSum=-0.375;QD=12.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:56,58:114:99:1448,0,1238
9    45376889    rs147687854    C    G    57.36    MQFilter40;QDFilter2    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.742;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.07;MQ0=34;MQRankSum=-1.749;QD=0.91;ReadPosRankSum=-0.819;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MYO5BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437055    GT:AD:DP:GQ:PL    0/1:33,30:63:87.35:87,0,238
9    45727566    rs139177003    CTT    C    175.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=44.3445;IndelType=D;MQ=35.63;MQ0=0;MQRankSum=0.103;QD=17.57;ReadPosRankSum=-1.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:5,5:10:99:215,0,275
9    45727954    .    C    A    73.15    MQFilter40;QDFilter2    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DP=135;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.23;MQ0=96;MQRankSum=-0.852;QD=0.54;ReadPosRankSum=-0.101;SNPEFF_AMINO_ACID_CHANGE=A53;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_45727874_45728274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:93,42:135:99:103,0,168
9    45727961    .    G    C    49.52    MQFilter40;QDFilter2    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.254;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.03;MQ0=97;MQRankSum=-0.665;QD=0.37;ReadPosRankSum=-1.331;SNPEFF_AMINO_ACID_CHANGE=D56H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_45727874_45728274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:92,42:134:79.52:80,0,151
9    45728080    .    C    T    493.68    MQFilter40    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.447;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.87;MQ0=24;MQRankSum=0.193;QD=4.84;ReadPosRankSum=-0.028;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:54,47:102:99:524,0,617
9    45730123    .    C    T    76.87    MQFilter40    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8893;MQ=18.48;MQ0=11;MQRankSum=0.387;QD=3.34;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:14,9:23:99:107,0,101
9    45730202    rs143647724    G    A    200.32    MQFilter40    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=2.05;DB;DP=49;Dels=0.0;FS=6.56;HRun=0;HaplotypeScore=8.2965;MQ=21.97;MQ0=14;MQRankSum=0.283;QD=4.09;ReadPosRankSum=0.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:30,19:49:99:230,0,336
9    45730241    rs62556711    C    T    858.48    MQFilter40    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.078;DB;DP=82;Dels=0.0;FS=3.855;HRun=0;HaplotypeScore=1.4725;MQ=28.41;MQ0=12;MQRankSum=0.201;QD=10.47;ReadPosRankSum=-1.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:35,46:82:99:888,0,507
9    45730320    rs62556712    C    T    898.40    MQFilter40    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=1.118;DB;DP=126;Dels=0.0;FS=2.672;HRun=0;HaplotypeScore=0.0;MQ=22.76;MQ0=60;MQRankSum=-1.666;QD=7.13;ReadPosRankSum=-0.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:39,87:126:99:928,0,411
9    45730367    .    G    A    172.99    MQFilter40;QDFilter2    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.512;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.14;MQ0=74;MQRankSum=-0.346;QD=1.59;ReadPosRankSum=0.127;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:64,45:109:99:203,0,274
9    45730374    rs113637670    C    T    189.69    MQFilter40;QDFilter2    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=3.047;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.88;MQ0=80;MQRankSum=0.051;QD=1.62;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377531    GT:AD:DP:GQ:PL    0/1:69,48:117:99:220,0,287
9    45733424    rs78853996    C    T    30.61    QDFilter2    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.02;MQ0=1;MQRankSum=-3.18;QD=1.13;ReadPosRankSum=-0.377;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM27E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377529    GT:AD:DP:GQ:PL    0/1:17,10:27:60.60:61,0,561
9    46117306    .    T    C    51.94    MQFilter40;QDFilter2    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.363;DP=54;Dels=0.0;FS=3.891;HRun=1;HaplotypeScore=1.9931;MQ=19.97;MQ0=17;MQRankSum=-1.617;QD=0.96;ReadPosRankSum=-0.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-157L3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448178    GT:AD:DP:GQ:PL    0/1:40,14:54:81.94:82,0,517
9    46117308    .    T    C    49.97    MQFilter40;QDFilter2    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.871;DP=51;Dels=0.0;FS=3.891;HRun=0;HaplotypeScore=1.9931;MQ=20.44;MQ0=15;MQRankSum=-1.652;QD=0.98;ReadPosRankSum=-0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-157L3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448178    GT:AD:DP:GQ:PL    0/1:32,19:51:79.97:80,0,523
9    46117321    rs141450526    G    T    49.90    MQFilter40;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=42;Dels=0.0;FS=7.402;HRun=0;HaplotypeScore=0.0;MQ=22.12;MQ0=10;MQRankSum=-1.677;QD=1.19;ReadPosRankSum=1.928;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-157L3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448178    GT:AD:DP:GQ:PL    0/1:28,14:42:79.90:80,0,530
9    46121284    .    T    C    61.85    MQFilter40    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DP=31;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=0.0;MQ=9.62;MQ0=24;MQRankSum=0.742;QD=2.0;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-157L3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423046    GT:AD:DP:GQ:PL    0/1:20,11:31:11.67:92,0,12
9    46121571    rs76180937    T    C    31.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.81;MQ0=0;QD=15.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-157L3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423046    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
9    46121590    rs1740999    C    T    35.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.81;MQ0=0;QD=17.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-157L3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423046    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
9    46383057    .    C    T    73.37    MQFilter40;QDFilter2    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.14;MQ0=25;MQRankSum=1.356;QD=1.79;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL162731.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377525    GT:AD:DP:GQ:PL    0/1:30,11:41:99:103,0,103
9    46386902    .    G    A    150.49    MQFilter40;QDFilter2    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.596;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=10.64;MQ0=61;MQRankSum=0.775;QD=1.75;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=T34I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_46385691_46387031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL162731.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377525    GT:AD:DP:GQ:PL    0/1:48,38:86:71.66:180,0,72
9    46386910    .    T    C    198.73    MQFilter40    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=12.62;MQ0=55;MQRankSum=0.678;QD=2.39;ReadPosRankSum=1.13;SNPEFF_AMINO_ACID_CHANGE=K31;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_46385691_46387031;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL162731.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377525    GT:AD:DP:GQ:PL    0/1:45,38:83:99:229,0,127
9    46386956    .    C    G    845.38    MQFilter40    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=1.66;DP=82;Dels=0.0;FS=3.071;HRun=1;HaplotypeScore=0.0;MQ=21.63;MQ0=25;MQRankSum=1.315;QD=10.31;ReadPosRankSum=-0.916;SNPEFF_AMINO_ACID_CHANGE=R16P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_46385691_46387031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL162731.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377525    GT:AD:DP:GQ:PL    0/1:32,50:82:99:875,0,230
9    46386994    rs144952187    C    T    854.17    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.706;DB;DP=78;Dels=0.0;FS=1.114;HRun=1;HaplotypeScore=0.0;MQ=24.74;MQ0=11;MQRankSum=0.883;QD=10.95;ReadPosRankSum=0.772;SNPEFF_AMINO_ACID_CHANGE=R3;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_46385691_46387031;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL162731.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377525    GT:AD:DP:GQ:PL    0/1:26,52:78:99:884,0,332
9    46386995    .    C    A    854.17    MQFilter40    AB=0.299;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.038;DP=77;Dels=0.0;FS=1.114;HRun=0;HaplotypeScore=0.0;MQ=24.9;MQ0=10;MQRankSum=1.495;QD=11.09;ReadPosRankSum=0.744;SNPEFF_AMINO_ACID_CHANGE=R3M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_46385691_46387031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL162731.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377525    GT:AD:DP:GQ:PL    0/1:23,54:77:99:884,0,332
9    46387008    .    A    G    843.73    MQFilter40    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=0.075;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=22.69;MQ0=20;MQRankSum=-0.008;QD=10.55;ReadPosRankSum=0.226;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL162731.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417276    GT:AD:DP:GQ:PL    0/1:21,59:80:99:874,0,253
9    46387102    .    G    A    182.90    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=9.78;MQ0=64;MQRankSum=0.371;QD=2.18;ReadPosRankSum=0.124;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL162731.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417276    GT:AD:DP:GQ:PL    0/1:36,48:84:44:213,0,44
9    47178434    rs62556106    G    A    332.69    MQFilter40    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.814;DB;DP=140;Dels=0.0;FS=1.211;HRun=0;HaplotypeScore=2.8343;MQ=23.12;MQ0=44;MQRankSum=-0.049;QD=2.38;ReadPosRankSum=0.522;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:103,37:140:99:363,0,1295
9    47312259    .    C    T    111.35    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.96;MQ0=6;MQRankSum=-0.429;QD=3.98;ReadPosRankSum=0.824;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL953854.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486809    GT:AD:DP:GQ:PL    0/1:16,12:28:99:141,0,209
9    65626604    .    A    G    146.28    MQFilter40;QDFilter2    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.098;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.66;MQ0=51;MQRankSum=-2.527;QD=1.45;ReadPosRankSum=-0.748;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-203I2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435173    GT:AD:DP:GQ:PL    0/1:77,24:101:99:176,0,649
9    65631910    .    C    T    488.06    MQFilter40    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.054;DP=90;Dels=0.0;FS=6.658;HRun=2;HaplotypeScore=0.0;MQ=18.89;MQ0=51;MQRankSum=-0.042;QD=5.42;ReadPosRankSum=1.391;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-203I2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435173    GT:AD:DP:GQ:PL    0/1:65,25:90:99:518,0,510
9    66513491    .    A    T    100.44    MQFilter40;QDFilter2    AB=0.665;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.316;DP=158;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7686;MQ=24.08;MQ0=47;MQRankSum=-5.187;QD=0.64;ReadPosRankSum=3.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-262H14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435875    GT:AD:DP:GQ:PL    0/1:105,53:158:99:130,0,2139
9    66513644    rs141046270    C    G    91.97    MQFilter40;QDFilter2    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8956;MQ=7.86;MQ0=137;MQRankSum=-2.786;QD=0.57;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-262H14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435875    GT:AD:DP:GQ:PL    0/1:43,118:161:99:122,0,183
9    66513712    rs143500709    G    A    119.25    MQFilter40;QDFilter2    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DB;DP=156;Dels=0.0;FS=2.706;HRun=0;HaplotypeScore=0.0;MQ=9.51;MQ0=126;MQRankSum=-0.638;QD=0.76;ReadPosRankSum=1.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-262H14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435875    GT:AD:DP:GQ:PL    0/1:109,46:156:99:149,0,369
9    66513807    rs138035722    C    T    294.90    MQFilter40    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.024;DB;DP=113;Dels=0.0;FS=2.393;HRun=0;HaplotypeScore=0.0;MQ=23.84;MQ0=42;MQRankSum=0.264;QD=2.61;ReadPosRankSum=0.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-262H14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435875    GT:AD:DP:GQ:PL    0/1:82,30:113:99:325,0,1287
9    66513993    .    C    G    63.33    MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DP=107;Dels=0.0;FS=24.353;HRun=0;HaplotypeScore=0.6651;MQ=21.91;MQ0=36;MQRankSum=-0.141;QD=0.59;ReadPosRankSum=0.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-262H14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435875    GT:AD:DP:GQ:PL    0/1:86,21:107:93.32:93,0,1438
9    66514143    rs1907840    G    A    143.59    QDFilter2    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.409;DB;DP=90;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=1.8519;MQ=55.02;MQ0=1;MQRankSum=1.411;QD=1.6;ReadPosRankSum=-0.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-262H14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435875    GT:AD:DP:GQ:PL    0/1:78,12:90:99:174,0,2404
9    66516728    rs10907873    G    A    57.85    QDFilter2    AB=0.874;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.674;DB;DP=103;Dels=0.0;FS=1.316;HRun=1;HaplotypeScore=3.1612;MQ=42.32;MQ0=4;MQRankSum=-2.108;QD=0.56;ReadPosRankSum=-1.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MYO5BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449815    GT:AD:DP:GQ:PL    0/1:90,13:103:87.84:88,0,2390
9    66517185    rs7019764    G    A    115.62    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=0.866;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9467;MQ=55.82;MQ0=0;MQRankSum=-2.715;QD=1.48;ReadPosRankSum=0.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MYO5BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449815    GT:AD:DP:GQ:PL    0/1:66,12:78:99:146,0,2005
9    66517198    rs10796698    C    A    171.31    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=78;Dels=0.0;FS=4.61;HRun=1;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=2.704;QD=2.2;ReadPosRankSum=-0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MYO5BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449815    GT:AD:DP:GQ:PL    0/1:66,12:78:99:201,0,2148
9    66545565    rs1845113    G    A    158.30    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.121;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=32.48;MQ0=14;MQRankSum=-3.76;QD=1.76;ReadPosRankSum=-1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-262H14.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402994    GT:AD:DP:GQ:PL    0/1:75,15:90:99:188,0,1649
9    66553313    .    G    C    104.91    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.47;MQ0=1;QD=20.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-262H14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476224    GT:AD:DP:GQ:PL    1/1:1,4:5:12.02:137,12,0
9    67038667    rs146217750    C    G    134.31    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=32;Dels=0.0;FS=1.55;HRun=0;HaplotypeScore=0.0;MQ=25.24;MQ0=2;MQRankSum=-0.462;QD=4.2;ReadPosRankSum=0.594;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447083    GT:AD:DP:GQ:PL    0/1:22,10:32:99:164,0,395
9    67046475    rs147852627    C    T    52.64    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.18;MQ0=31;QD=1.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322309    GT:AD:DP:GQ:PL    1/1:28,7:35:8.98:85,9,0
9    67272724    .    CG    C    252.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DP=25;FS=3.274;HRun=12;HaplotypeScore=110.8003;IndelType=D;MQ=30.29;MQ0=17;MQRankSum=-0.578;QD=5.61;ReadPosRankSum=-1.542;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    1/1:9,17:25:19.46:294,19,0
9    67273324    rs10797110    T    C    1829.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.89;MQ0=1;QD=28.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    1/1:0,63:64:99:1862,159,0
9    67273405    rs62565079    C    T    179.99    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.967;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=32.7636;MQ=28.91;MQ0=14;MQRankSum=-0.5;QD=1.8;ReadPosRankSum=-0.219;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:80,20:100:99:210,0,1498
9    67273435    rs9777173    C    T    1754.04    MQFilter40    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=129;Dels=0.0;FS=2.786;HRun=0;HaplotypeScore=7.4346;MQ=32.22;MQ0=14;MQRankSum=1.773;QD=13.6;ReadPosRankSum=0.255;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:53,76:129:99:1784,0,686
9    67273452    rs12375945    A    T    586.63    MQFilter40    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.028;DB;DP=141;Dels=0.0;FS=2.642;HRun=0;HaplotypeScore=5.2988;MQ=34.63;MQ0=11;MQRankSum=-2.381;QD=4.16;ReadPosRankSum=-0.529;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:102,38:141:99:617,0,2335
9    67273471    rs10908880    G    A    1373.42    HaplotypeScoreFilter13;MQFilter40    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=5.849;DB;DP=156;Dels=0.0;FS=16.239;HRun=0;HaplotypeScore=14.3342;MQ=38.15;MQ0=8;MQRankSum=2.238;QD=8.8;ReadPosRankSum=0.008;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:97,59:156:99:1403,0,2103
9    67273773    .    G    GA    230.36    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DP=27;FS=2.738;HRun=1;HaplotypeScore=75.8327;IndelType=I;MQ=49.49;MQ0=1;MQRankSum=-1.991;QD=8.23;ReadPosRankSum=-1.673;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:20,8:27:99:269,0,659
9    67273795    rs12376958    G    C    52.46    MQFilter40    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.45;MQ0=5;MQRankSum=-1.152;QD=2.38;ReadPosRankSum=-0.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:18,4:22:82.45:82,0,354
9    67281560    rs113895189    C    A    37.60    MQFilter40;QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.01;MQ0=2;MQRankSum=1.613;QD=1.14;ReadPosRankSum=-0.474;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:29,4:33:67.59:68,0,651
9    67281682    rs11788862    T    C    1209.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.62;MQ0=15;QD=13.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    1/1:0,90:91:99:1243,126,0
9    67281729    rs9696090    G    A    216.32    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.817;AC=1;AF=0.50;AN=2;BaseQRankSum=2.122;DB;DP=131;Dels=0.0;FS=5.532;HRun=0;HaplotypeScore=18.7028;MQ=29.91;MQ0=11;MQRankSum=-0.03;QD=1.65;ReadPosRankSum=-0.751;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:107,24:131:99:246,0,2228
9    67281734    rs2321020    G    A    224.36    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=125;Dels=0.0;FS=1.052;HRun=1;HaplotypeScore=19.6498;MQ=30.38;MQ0=10;MQRankSum=-0.937;QD=1.79;ReadPosRankSum=0.822;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:104,21:125:99:254,0,2271
9    67281745    rs2874422    G    T    310.62    HaplotypeScoreFilter13;MQFilter40    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=3.339;DB;DP=136;Dels=0.0;FS=5.56;HRun=0;HaplotypeScore=25.5758;MQ=30.62;MQ0=9;MQRankSum=-0.008;QD=2.28;ReadPosRankSum=-0.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:85,25:136:99:341,0,1668
9    67281780    rs59654563    C    T    302.20    MQFilter40    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=151;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8696;MQ=36.99;MQ0=2;MQRankSum=0.315;QD=2.0;ReadPosRankSum=-1.652;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:126,24:151:99:332,0,3112
9    67281836    rs75812522    T    G    312.55    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.101;DB;DP=135;Dels=0.0;FS=1.07;HRun=0;HaplotypeScore=2.1877;MQ=36.74;MQ0=1;MQRankSum=-2.037;QD=2.32;ReadPosRankSum=-1.659;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:105,30:135:99:343,0,2621
9    67281854    rs142769078    T    G    196.40    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=2.778;DB;DP=109;Dels=0.0;FS=5.646;HRun=2;HaplotypeScore=17.6495;MQ=37.75;MQ0=1;MQRankSum=-1.916;QD=1.8;ReadPosRankSum=0.756;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:90,19:109:99:226,0,2221
9    67281861    rs74515130    A    T    169.65    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.234;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.5827;MQ=35.74;MQ0=1;MQRankSum=0.32;QD=1.68;ReadPosRankSum=0.158;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:79,22:101:99:200,0,2029
9    67281876    rs75105782    C    T    172.41    MQFilter40;QDFilter2    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=2.672;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=32.66;MQ0=1;MQRankSum=-1.472;QD=1.98;ReadPosRankSum=0.352;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:70,17:87:99:202,0,1672
9    67281933    .    A    C    73.33    MQFilter40;QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.055;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.3999;MQ=24.49;MQ0=3;MQRankSum=1.189;QD=1.75;ReadPosRankSum=-1.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334576    GT:AD:DP:GQ:PL    0/1:33,9:42:99:103,0,493
9    67293518    rs79019702    C    T    319.70    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.673;DB;DP=192;Dels=0.0;FS=2.277;HRun=0;HaplotypeScore=15.7347;MQ=31.62;MQ0=3;MQRankSum=-4.815;QD=1.67;ReadPosRankSum=0.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-236F9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432011    GT:AD:DP:GQ:PL    0/1:147,45:192:99:350,0,4181
9    67293607    .    T    C    95.54    MQFilter40;QDFilter2    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=3.43;DP=247;DS;Dels=0.0;FS=10.739;HRun=1;HaplotypeScore=3.7935;MQ=27.39;MQ0=35;MQRankSum=-3.536;QD=0.39;ReadPosRankSum=-2.427;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-236F9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432011    GT:AD:DP:GQ:PL    0/1:194,52:247:99:126,0,4362
9    67293726    rs79504304    G    A    645.35    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=2.21;DB;DP=249;DS;Dels=0.0;FS=5.68;HRun=1;HaplotypeScore=4.5697;MQ=29.94;MQ0=14;MQRankSum=-1.457;QD=2.59;ReadPosRankSum=0.842;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-236F9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432011    GT:AD:DP:GQ:PL    0/1:193,55:249:99:675,0,4914
9    67293783    .    G    C    984.23    MQFilter40    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DP=214;DS;Dels=0.0;FS=2.129;HRun=1;HaplotypeScore=4.0597;MQ=26.86;MQ0=4;MQRankSum=-0.927;QD=4.6;ReadPosRankSum=-1.967;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-236F9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444603    GT:AD:DP:GQ:PL    0/1:144,70:214:99:1014,0,3150
9    67333835    rs9695251    C    G    34.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.4;MQ0=0;MQRankSum=-0.358;QD=5.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-236F9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443754    GT:AD:DP:GQ:PL    0/1:4,2:6:64.27:64,0,106
9    67334090    rs4929659    T    C    1733.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=14.6;MQ0=130;QD=6.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-236F9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443754    GT:AD:DP:GQ:PL    1/1:1,249:250:99:1766,177,0
9    67334161    rs3902267    T    C    118.67    MQFilter40;QDFilter2    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.057;DB;DP=215;DS;Dels=0.0;FS=1.1;HRun=1;HaplotypeScore=0.8667;MQ=21.54;MQ0=93;MQRankSum=-5.027;QD=0.55;ReadPosRankSum=-0.115;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-236F9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443754    GT:AD:DP:GQ:PL    0/1:158,57:215:99:149,0,1851
9    67671056    rs147230765    G    A    260.16    MQFilter40;QDFilter2    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.612;DB;DP=135;Dels=0.0;FS=10.257;HRun=0;HaplotypeScore=1.8625;MQ=22.41;MQ0=40;MQRankSum=-0.111;QD=1.93;ReadPosRankSum=1.458;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:94,41:135:99:290,0,1183
9    67671098    .    C    A    157.78    MQFilter40;QDFilter2    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DP=165;Dels=0.0;FS=8.293;HRun=0;HaplotypeScore=0.9469;MQ=16.67;MQ0=78;MQRankSum=0.265;QD=0.96;ReadPosRankSum=0.159;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:104,61:165:99:188,0,727
9    67671099    .    C    T    149.98    MQFilter40;QDFilter2    AB=0.665;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DP=164;Dels=0.0;FS=13.341;HRun=0;HaplotypeScore=0.9469;MQ=16.61;MQ0=78;MQRankSum=1.15;QD=0.91;ReadPosRankSum=0.343;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:109,55:164:99:180,0,802
9    67671115    .    C    T    172.68    MQFilter40;QDFilter2    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=2.382;DP=168;Dels=0.0;FS=14.469;HRun=0;HaplotypeScore=0.8941;MQ=13.66;MQ0=88;MQRankSum=1.477;QD=1.03;ReadPosRankSum=0.031;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:116,52:168:99:203,0,591
9    67671178    .    T    A    75.44    MQFilter40;QDFilter2    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.401;DP=109;Dels=0.0;FS=11.155;HRun=0;HaplotypeScore=0.0;MQ=14.37;MQ0=50;MQRankSum=-0.597;QD=0.69;ReadPosRankSum=1.327;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:76,33:109:99:105,0,582
9    67912354    .    A    G    52.19    MQFilter40    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.443;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.74;MQ0=6;MQRankSum=-3.01;QD=2.01;ReadPosRankSum=0.371;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,6:26:82.18:82,0,242
9    67930918    rs192446206    A    C    244.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377477    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
9    67952119    rs62542461    A    G    288.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.16;MQ0=0;QD=18.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377477    GT:AD:DP:GQ:PL    1/1:0,16:16:38.89:321,39,0
9    67965193    .    T    TTTG    571.48    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.065;DP=17;FS=9.031;HRun=0;HaplotypeScore=73.19;IndelType=I;MQ=11.66;MQ0=36;MQRankSum=-0.251;QD=10.58;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377477    GT:AD:DP:GQ:PL    0/1:12,39:17:99:611,0,203
9    67968353    rs143310784    C    T    619.44    HaplotypeScoreFilter13;MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=3.376;DB;DP=236;Dels=0.0;FS=1.812;HRun=0;HaplotypeScore=15.0882;MQ=15.9;MQ0=102;MQRankSum=-0.109;QD=2.62;ReadPosRankSum=-0.123;SNPEFF_AMINO_ACID_CHANGE=R638*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_9_67967939_67969840;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000377477    GT:AD:DP:GQ:PL    0/1:181,55:236:99:649,0,1348
9    67968458    .    G    A    569.11    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.363;DP=244;DS;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=13.32;MQ0=102;MQRankSum=0.505;QD=2.33;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=A673T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_67967939_67969840;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377477    GT:AD:DP:GQ:PL    0/1:157,87:244:99:599,0,939
9    67968476    .    C    T    537.02    MQFilter40    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=5.134;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3264;MQ=11.77;MQ0=124;MQRankSum=0.903;QD=2.15;ReadPosRankSum=0.783;SNPEFF_AMINO_ACID_CHANGE=R679C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_67967939_67969840;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377477    GT:AD:DP:GQ:PL    0/1:150,99:249:99:567,0,406
9    68316187    rs147458109    C    T    110.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.55;MQ0=3;QD=11.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-12P21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444097    GT:AD:DP:GQ:PL    1/1:2,8:10:14.97:143,15,0
9    68427703    rs62543285    G    A    280.70    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=3.447;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.96;MQ0=10;MQRankSum=-2.901;QD=8.77;ReadPosRankSum=0.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:8,24:32:99:311,0,229
9    68427786    rs4300101    C    T    2232.43    PASS    AB=0.168;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.422;DB;DP=107;Dels=0.02;FS=13.983;HRun=0;HaplotypeScore=1.933;MQ=43.25;MQ0=11;MQRankSum=-3.698;QD=20.48;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:18,89:107:99:2262,0,416
9    68427800    rs77055654    C    T    72.55    QDFilter2    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=151;Dels=0.0;FS=2.14;HRun=1;HaplotypeScore=2.7833;MQ=43.76;MQ0=12;MQRankSum=1.41;QD=0.48;ReadPosRankSum=0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:137,14:151:99:103,0,3646
9    68427818    rs111699417    G    GA    1598.22    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=184;FS=2.485;HRun=7;HaplotypeScore=1221.8513;IndelType=I;MQ=45.73;MQ0=15;MQRankSum=-6.196;QD=7.61;ReadPosRankSum=-1.787;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:130,80:184:99:1637,0,2833
9    68427876    rs80085886    C    T    63.13    HaplotypeScoreFilter13;QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.071;DB;DP=248;DS;Dels=0.0;FS=34.931;HRun=1;HaplotypeScore=29.9655;MQ=45.64;MQ0=22;MQRankSum=-6.32;QD=0.25;ReadPosRankSum=-1.378;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:208,37:248:93.12:93,0,5702
9    68427877    rs4568707    G    A    3777.08    HaplotypeScoreFilter13    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=6.24;DB;DP=246;DS;Dels=0.0;FS=13.658;HRun=0;HaplotypeScore=29.9655;MQ=45.85;MQ0=21;MQRankSum=2.439;QD=15.35;ReadPosRankSum=1.542;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:110,135:246:99:3777,0,1928
9    68427938    rs113084687    CAT    C    275.48    PASS    AB=0.911;AC=1;AF=0.50;AN=2;BaseQRankSum=2.675;DB;DP=110;DS;FS=0.0;HRun=0;HaplotypeScore=831.5982;IndelType=D;MQ=46.95;MQ0=9;MQRankSum=1.416;QD=2.07;ReadPosRankSum=0.262;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:120,13:110:99:315,0,5306
9    68427956    rs4316243    T    C    2185.76    PASS    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.929;DB;DP=120;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.986;MQ=47.28;MQ0=9;MQRankSum=-4.238;QD=18.21;ReadPosRankSum=0.654;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:25,95:120:99:2216,0,722
9    68428005    rs77542827    G    C    41.98    QDFilter2    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.169;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.679;MQ=49.93;MQ0=5;MQRankSum=-4.85;QD=0.6;ReadPosRankSum=1.002;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:50,13:70:71.97:72,0,1844
9    68428045    rs78416467    T    C    33.04    QDFilter2    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.083;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7979;MQ=41.62;MQ0=5;MQRankSum=-1.083;QD=1.0;ReadPosRankSum=-0.558;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:26,7:33:63.03:63,0,654
9    68429949    rs71248482    A    G    72.53    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.8022;MQ=30.74;MQ0=1;MQRankSum=0.922;QD=8.06;ReadPosRankSum=0.421;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:4,5:9:99:103,0,111
9    68430325    rs75174046    T    C    33.01    MQFilter40;QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.544;DB;DP=158;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9797;MQ=10.11;MQ0=128;MQRankSum=0.596;QD=0.21;ReadPosRankSum=0.648;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:133,25:158:63:63,0,543
9    68430338    rs4415994    C    T    236.23    MQFilter40;QDFilter2    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=144;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9866;MQ=10.28;MQ0=116;MQRankSum=0.875;QD=1.64;ReadPosRankSum=0.092;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:85,59:144:99:266,0,312
9    68430364    .    G    GA    112.28    QDFilter2    AB=0.845;AC=1;AF=0.50;AN=2;BaseQRankSum=0.859;DP=25;DS;FS=0.0;HRun=6;HaplotypeScore=185.1046;IndelType=I;MQ=10.95;MQ0=93;MQRankSum=0.604;QD=0.94;ReadPosRankSum=-0.414;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:98,22:25:99:151,0,506
9    68438423    rs150884534    TTA    T    317.69    PASS    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=1.74;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=392.0164;IndelType=D;MQ=25.13;MQ0=11;MQRankSum=1.409;QD=4.81;ReadPosRankSum=-1.144;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:53,13:40:99:357,0,859
9    68438438    .    A    T    53.54    MQFilter40;QDFilter2    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.332;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.9155;MQ=20.84;MQ0=27;MQRankSum=2.63;QD=0.55;ReadPosRankSum=0.969;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:88,9:97:83.53:84,0,889
9    68438442    rs62543823    A    T    47.12    MQFilter40;QDFilter2    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.409;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.9155;MQ=20.05;MQ0=34;MQRankSum=-5.168;QD=0.45;ReadPosRankSum=0.291;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:60,45:105:77.12:77,0,943
9    68438457    rs62543824    A    T    32.11    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=3.042;DB;DP=128;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=23.654;MQ=17.93;MQ0=37;MQRankSum=-4.928;QD=0.25;ReadPosRankSum=-0.025;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:75,53:128:62.10:62,0,1061
9    68438460    rs145818452    C    T    125.19    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=129;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=25.3183;MQ=17.93;MQ0=36;MQRankSum=1.406;QD=0.97;ReadPosRankSum=2.313;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:107,22:129:99:155,0,888
9    68438639    rs62543828    G    T    90.71    MQFilter40;QDFilter2    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.525;DB;DP=213;DS;Dels=0.0;FS=18.146;HRun=0;HaplotypeScore=11.891;MQ=36.47;MQ0=30;MQRankSum=-10.695;QD=0.43;ReadPosRankSum=5.136;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:113,99:213:99:121,0,3527
9    68438765    rs76458808    C    CCT    398.70    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=4.443;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=202.5767;IndelType=I;MQ=50.89;MQ0=0;MQRankSum=-4.195;QD=10.78;ReadPosRankSum=-0.903;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:28,9:37:99:438,0,1212
9    68438793    rs62543831    G    C    183.22    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.339;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8039;MQ=47.67;MQ0=0;MQRankSum=-4.291;QD=5.91;ReadPosRankSum=2.709;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:18,10:31:99:213,0,674
9    68438810    rs74814969    C    T    264.94    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=42.56;MQ0=0;MQRankSum=-3.869;QD=9.14;ReadPosRankSum=0.967;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:14,15:29:99:295,0,419
9    68438829    rs62543832    G    A    315.75    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.659;DB;DP=26;Dels=0.0;FS=3.222;HRun=1;HaplotypeScore=0.8321;MQ=40.37;MQ0=0;MQRankSum=-4.243;QD=12.14;ReadPosRankSum=1.397;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:10,16:26:99:346,0,300
9    68438868    rs77647020    C    A    48.55    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.1;MQ0=0;MQRankSum=-1.092;QD=3.73;ReadPosRankSum=-0.271;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-764K9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376334    GT:AD:DP:GQ:PL    0/1:8,5:13:78.54:79,0,189
9    68728799    rs4928724    A    T    40.80    QDFilter2    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=42;Dels=0.0;FS=2.576;HRun=1;HaplotypeScore=0.0;MQ=42.31;MQ0=5;MQRankSum=-4.101;QD=0.97;ReadPosRankSum=-1.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:31,11:42:70.79:71,0,781
9    68728852    rs75387889    C    G    964.84    MQFilter40    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.559;DB;DP=153;Dels=0.0;FS=31.41;HRun=1;HaplotypeScore=4.9987;MQ=36.25;MQ0=30;MQRankSum=0.009;QD=6.31;ReadPosRankSum=-3.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:95,58:153:99:995,0,2647
9    68728863    rs76857508    A    G    644.54    MQFilter40    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.814;DB;DP=179;Dels=0.0;FS=27.401;HRun=1;HaplotypeScore=0.9665;MQ=34.0;MQ0=45;MQRankSum=0.781;QD=3.6;ReadPosRankSum=-1.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:136,42:179:99:675,0,2989
9    68728891    rs144596557    C    T    49.78    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.894;AC=1;AF=0.50;AN=2;BaseQRankSum=0.707;DB;DP=226;Dels=0.0;FS=17.77;HRun=0;HaplotypeScore=15.6897;MQ=30.15;MQ0=68;MQRankSum=0.517;QD=0.22;ReadPosRankSum=1.894;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:202,24:226:79.78:80,0,3805
9    68728895    rs62554277    C    T    1139.42    HaplotypeScoreFilter13;MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.305;DB;DP=239;Dels=0.0;FS=50.856;HRun=2;HaplotypeScore=15.6897;MQ=29.6;MQ0=70;MQRankSum=-0.576;QD=4.77;ReadPosRankSum=2.006;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:131,108:239:99:1169,0,2730
9    68729019    rs149208392    A    T    281.37    MQFilter40    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=94;DS;Dels=0.0;FS=11.162;HRun=2;HaplotypeScore=11.9285;MQ=27.2;MQ0=15;MQRankSum=-4.21;QD=2.99;ReadPosRankSum=-0.655;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:28,52:94:99:311,0,814
9    68729029    rs28464427    G    A    518.53    MQFilter40    AB=0.284;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.957;DB;DP=95;Dels=0.0;FS=19.526;HRun=0;HaplotypeScore=12.4592;MQ=24.84;MQ0=17;MQRankSum=-3.501;QD=5.46;ReadPosRankSum=-1.274;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:27,68:95:99:549,0,683
9    68729120    rs142769284    A    G    127.27    MQFilter40;QDFilter2    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.901;DB;DP=250;DS;Dels=0.0;FS=1.907;HRun=0;HaplotypeScore=11.14;MQ=23.49;MQ0=49;MQRankSum=-0.986;QD=0.51;ReadPosRankSum=-0.535;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:213,37:250:99:157,0,3560
9    68729166    .    C    T    112.85    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DP=164;DS;Dels=0.0;FS=5.792;HRun=0;HaplotypeScore=64.3095;MQ=23.95;MQ0=17;MQRankSum=0.794;QD=0.69;ReadPosRankSum=1.077;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:141,23:164:99:143,0,2406
9    68729167    rs150656461    G    A    1202.87    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.338;AC=1;AF=0.50;AN=2;BaseQRankSum=0.371;DB;DP=155;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=63.3162;MQ=23.83;MQ0=17;MQRankSum=1.869;QD=7.76;ReadPosRankSum=-0.693;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:52,102:155:99:1233,0,684
9    68729170    .    G    T    680.54    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.783;DP=147;DS;Dels=0.0;FS=5.806;HRun=0;HaplotypeScore=56.35;MQ=23.41;MQ0=18;MQRankSum=1.416;QD=4.63;ReadPosRankSum=-0.259;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:78,68:147:99:711,0,1161
9    68729233    rs146583963    C    T    577.22    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.097;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.86;MQ0=19;MQRankSum=-0.678;QD=7.22;ReadPosRankSum=-1.964;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:16,64:80:99:607,0,138
9    68729252    rs150162387    G    A    556.54    MQFilter40    AB=0.224;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.269;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.82;MQ0=11;MQRankSum=1.118;QD=9.6;ReadPosRankSum=-0.766;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-391M20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427066    GT:AD:DP:GQ:PL    0/1:13,45:58:99:587,0,160
9    68773795    rs79701377    A    G    164.94    MQFilter40    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.97;MQ0=0;MQRankSum=-0.085;QD=11.78;ReadPosRankSum=1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PGM5P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377476    GT:AD:DP:GQ:PL    0/1:3,11:14:89.97:195,0,90
9    68997230    rs62552718    A    G    160.94    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.049;QD=9.47;ReadPosRankSum=0.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:10,7:17:99:191,0,353
9    68997249    rs62552719    A    G    198.08    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.298;DB;DP=24;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.239;QD=8.25;ReadPosRankSum=0.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:15,9:24:99:228,0,521
9    68997287    rs62555104    A    C    334.80    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=1.306;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.069;QD=8.17;ReadPosRankSum=-0.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:27,14:41:99:365,0,933
9    68997350    rs62555105    G    C    909.81    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.117;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.612;MQ=59.73;MQ0=0;MQRankSum=-0.572;QD=10.83;ReadPosRankSum=1.252;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:51,33:84:99:940,0,1527
9    68997385    rs74213243    C    T    1231.01    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.929;DB;DP=101;Dels=0.0;FS=1.64;HRun=0;HaplotypeScore=1.9279;MQ=59.13;MQ0=0;MQRankSum=-0.466;QD=12.19;ReadPosRankSum=-0.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:55,46:101:99:1261,0,1467
9    68997408    rs76464891    G    A    976.35    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=84;Dels=0.0;FS=4.275;HRun=0;HaplotypeScore=0.9789;MQ=59.23;MQ0=0;MQRankSum=0.906;QD=11.62;ReadPosRankSum=0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:45,39:84:99:1006,0,1464
9    68997487    rs62555106    C    A    526.64    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.36;MQ0=0;MQRankSum=-0.745;QD=14.63;ReadPosRankSum=1.871;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:19,17:36:99:557,0,670
9    68997495    rs62555107    C    G    366.33    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.83;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9973;MQ=59.2;MQ0=0;MQRankSum=0.122;QD=12.63;ReadPosRankSum=2.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:16,13:29:99:396,0,450
9    68997532    rs79252318    C    T    269    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=3.318;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.031;QD=11.21;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:14,10:24:99:299,0,364
9    68997545    rs7466423    A    T    146.19    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.14;QD=7.69;ReadPosRankSum=-1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459317    GT:AD:DP:GQ:PL    0/1:13,6:19:99:176,0,438
9    69067706    .    G    A    69.19    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3286;MQ=18.88;MQ0=6;MQRankSum=0.633;QD=4.32;ReadPosRankSum=-0.365;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-87H9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424707    GT:AD:DP:GQ:PL    0/1:11,5:16:79.37:99,0,79
9    69067824    .    A    T    378.41    MQFilter40    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6637;MQ=36.58;MQ0=7;MQRankSum=0.594;QD=8.05;ReadPosRankSum=0.538;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-87H9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424707    GT:AD:DP:GQ:PL    0/1:31,16:47:99:408,0,647
9    69067929    .    G    A    181.44    MQFilter40    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.375;DP=82;Dels=0.0;FS=7.156;HRun=0;HaplotypeScore=0.734;MQ=29.96;MQ0=20;MQRankSum=-3.145;QD=2.21;ReadPosRankSum=1.456;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-87H9.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000424707    GT:AD:DP:GQ:PL    0/1:62,20:82:99:211,0,1108
9    69067962    .    A    T    198.25    MQFilter40    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.168;DP=99;Dels=0.0;FS=16.47;HRun=0;HaplotypeScore=1.7262;MQ=22.7;MQ0=30;MQRankSum=-0.799;QD=2.0;ReadPosRankSum=-0.335;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-87H9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424707    GT:AD:DP:GQ:PL    0/1:78,21:99:99:228,0,942
9    69081962    rs145022910    C    T    64.01    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=22.28;MQ0=0;MQRankSum=-1.501;QD=3.56;ReadPosRankSum=2.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:9,9:18:94:94,0,215
9    69081998    rs75775973    A    G    46.93    MQFilter40;QDFilter2    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.779;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.5203;MQ=19.07;MQ0=4;MQRankSum=-3.647;QD=1.2;ReadPosRankSum=-1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:19,20:39:76.92:77,0,415
9    69082040    rs79004851    C    A    47.24    MQFilter40;QDFilter2    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.184;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=22.18;MQ0=6;MQRankSum=-4.303;QD=0.79;ReadPosRankSum=4.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:37,23:60:77.23:77,0,858
9    69082084    rs146888961    G    A    257.36    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.332;DB;DP=147;Dels=0.0;FS=2.146;HRun=3;HaplotypeScore=14.1127;MQ=19.16;MQ0=36;MQRankSum=-3.86;QD=1.75;ReadPosRankSum=1.862;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:102,45:147:99:287,0,1391
9    69082094    .    CA    C    49.60    QDFilter2    AB=0.898;AC=1;AF=0.50;AN=2;BaseQRankSum=3.348;DP=81;FS=9.299;HRun=2;HaplotypeScore=436.947;IndelType=D;MQ=18.67;MQ0=45;MQRankSum=-1.125;QD=0.33;ReadPosRankSum=1.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:133,17:81:88.63:89,0,2398
9    69082096    .    A    T    52.79    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.045;DP=152;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=30.0444;MQ=18.74;MQ0=45;MQRankSum=-2.239;QD=0.35;ReadPosRankSum=3.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:126,26:152:82.78:83,0,1299
9    69082166    rs146585832    G    A    83.91    MQFilter40;QDFilter2    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.72;DB;DP=187;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=8.1659;MQ=11.62;MQ0=108;MQRankSum=-5.11;QD=0.45;ReadPosRankSum=1.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:123,64:187:99:114,0,517
9    69082196    .    A    G    66.60    MQFilter40;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=3.06;DP=190;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.0346;MQ=9.34;MQ0=126;MQRankSum=-2.141;QD=0.35;ReadPosRankSum=0.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:168,22:190:96.59:97,0,324
9    69082250    .    C    G    38.49    MQFilter40;QDFilter2    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=4.106;DP=114;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=9.0328;MQ=8.98;MQ0=80;MQRankSum=-1.458;QD=0.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-87H9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412376    GT:AD:DP:GQ:PL    0/1:80,34:114:68.48:68,0,125
9    69082977    .    T    A    41.77    MQFilter40;QDFilter2    AB=0.206;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DP=68;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.9867;MQ=10.04;MQ0=48;MQRankSum=-1.435;QD=0.61;ReadPosRankSum=0.972;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-87H9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424707    GT:AD:DP:GQ:PL    0/1:14,54:68:71.77:72,0,89
9    69083118    .    T    C    184.93    MQFilter40    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=15.92;MQ0=44;MQRankSum=0.465;QD=2.53;ReadPosRankSum=0.022;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-87H9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424707    GT:AD:DP:GQ:PL    0/1:48,25:73:99:215,0,276
9    69083150    .    G    A    214.55    MQFilter40    AB=0.256;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.509;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7476;MQ=17.26;MQ0=24;MQRankSum=-0.056;QD=4.99;ReadPosRankSum=-0.503;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-87H9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424707    GT:AD:DP:GQ:PL    0/1:11,32:43:31.90:245,0,32
9    69083160    .    C    T    111.14    MQFilter40    AB=0.306;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8317;MQ=13.48;MQ0=24;MQRankSum=0.925;QD=3.09;ReadPosRankSum=-0.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-87H9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424707    GT:AD:DP:GQ:PL    0/1:11,25:36:5.67:141,0,6
9    69113031    .    G    A    145.75    MQFilter40;QDFilter2    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.396;DP=92;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6281;MQ=12.85;MQ0=34;MQRankSum=-0.857;QD=1.58;ReadPosRankSum=0.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PGM5P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272546    GT:AD:DP:GQ:PL    0/1:58,34:92:99:176,0,216
9    69117983    rs142312601    C    T    256.38    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.6;MQ0=1;QD=23.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PGM5P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272546    GT:AD:DP:GQ:PL    1/1:0,11:11:27.06:289,27,0
9    69120693    .    T    C    220.34    MQFilter40    AB=0.317;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.38;MQ0=20;MQRankSum=1.231;QD=5.37;ReadPosRankSum=0.037;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PGM5P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272546    GT:AD:DP:GQ:PL    0/1:13,28:41:82.35:250,0,82
9    69127257    .    G    C    68.93    MQFilter40    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=26.05;MQ0=8;MQRankSum=-2.181;QD=3.63;ReadPosRankSum=0.143;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PGM5P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272546    GT:AD:DP:GQ:PL    0/1:13,6:19:98.93:99,0,130
9    69206924    rs80282443    T    A    647.82    MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=223;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=16.25;MQ0=56;MQRankSum=0.742;QD=2.91;ReadPosRankSum=-1.81;SNPEFF_AMINO_ACID_CHANGE=E240D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69206903_69206971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377450    GT:AD:DP:GQ:PL    0/1:121,100:223:99:678,0,394
9    69207009    .    G    A    120.11    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=9.35;MQ0=41;QD=1.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377449    GT:AD:DP:GQ:PL    1/1:0,75:75:17.97:153,18,0
9    69238176    .    C    T    2546.28    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.593;DP=247;DS;Dels=0.0;FS=4.857;HRun=0;HaplotypeScore=0.6651;MQ=42.09;MQ0=1;MQRankSum=-2.433;QD=10.31;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=C239Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69237896_69238316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377445    GT:AD:DP:GQ:PL    0/1:147,100:247:99:2576,0,4035
9    69238234    rs114804965    G    T    3495.50    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.546;DB;DP=248;DS;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=5.4922;MQ=44.34;MQ0=5;MQRankSum=-2.595;QD=14.09;ReadPosRankSum=3.943;SNPEFF_AMINO_ACID_CHANGE=L184I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69238230_69238316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377449    GT:AD:DP:GQ:PL    0/1:133,115:248:99:3495,0,4051
9    69238268    .    G    A    4897.46    PASS    AB=0.268;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.416;DP=247;DS;Dels=0.0;FS=2.168;HRun=1;HaplotypeScore=1.9325;MQ=40.78;MQ0=7;MQRankSum=-4.704;QD=19.83;ReadPosRankSum=-1.321;SNPEFF_AMINO_ACID_CHANGE=V172;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69238230_69238316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377449    GT:AD:DP:GQ:PL    0/1:66,180:247:99:4897,0,1618
9    69238366    .    C    T    1010.14    MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=8.532;DP=135;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=25.41;MQ0=18;MQRankSum=3.076;QD=7.48;ReadPosRankSum=-0.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536466    GT:AD:DP:GQ:PL    0/1:87,48:135:99:1040,0,1486
9    69247387    .    G    A    51.49    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=15.87;MQ0=7;MQRankSum=0.937;QD=3.68;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377445    GT:AD:DP:GQ:PL    0/1:6,8:14:40.08:81,0,40
9    69247550    .    G    A    104.71    MQFilter40;QDFilter2    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DP=101;Dels=0.0;FS=34.458;HRun=0;HaplotypeScore=5.0595;MQ=27.26;MQ0=12;MQRankSum=-0.287;QD=1.04;ReadPosRankSum=0.308;SNPEFF_AMINO_ACID_CHANGE=A118;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69247522_69247581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377449    GT:AD:DP:GQ:PL    0/1:74,27:101:99:135,0,1337
9    69256833    rs113407575    A    G    1082.76    MQFilter40    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.455;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1036;MQ=27.04;MQ0=108;MQRankSum=-0.319;QD=4.33;ReadPosRankSum=-0.275;SNPEFF_AMINO_ACID_CHANGE=W100R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69256418_69256889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377441    GT:AD:DP:GQ:PL    0/1:189,61:250:99:1113,0,2324
9    69380355    rs146146300    A    G    280.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.68;MQ0=15;QD=9.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    1/1:11,19:30:38.86:314,39,0
9    69390020    .    T    A    79.39    MQFilter40;QDFilter2    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.724;DP=203;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.99;MQ0=180;MQRankSum=-0.213;QD=0.39;ReadPosRankSum=1.149;SNPEFF_AMINO_ACID_CHANGE=S192T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69389939_69390045;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    0/1:85,117:203:32.35:109,0,32
9    69391040    .    A    T    397.78    MQFilter40;QDFilter2    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.329;DP=211;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=11.45;MQ0=101;MQRankSum=0.711;QD=1.89;ReadPosRankSum=-0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    0/1:139,72:211:99:428,0,741
9    69403041    rs187355314    T    C    501.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.39;MQ0=1;QD=29.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427650    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:534,48,0
9    69420250    .    T    TCTTA    780.44    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.418;DP=26;FS=0.0;HRun=0;HaplotypeScore=103.6287;IndelType=I;MQ=22.19;MQ0=24;MQRankSum=-1.912;QD=15.61;ReadPosRankSum=-0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    0/1:40,10:26:99:819,0,659
9    69420382    .    G    A    1385.08    MQFilter40    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=7.6;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0776;MQ=32.33;MQ0=46;MQRankSum=-0.843;QD=5.54;ReadPosRankSum=-0.665;SNPEFF_AMINO_ACID_CHANGE=T424;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69420263_69420426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    0/1:180,70:250:99:1415,0,3485
9    69420470    .    G    GT    39.55    QDFilter2    AB=0.927;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.027;DP=115;DS;FS=19.117;HRun=8;HaplotypeScore=667.6085;IndelType=I;MQ=40.58;MQ0=11;MQRankSum=-0.914;QD=0.31;ReadPosRankSum=-2.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    0/1:117,10:115:78.58:79,0,2143
9    69420489    .    G    GTT    50.86    QDFilter2    AB=0.936;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.114;DP=89;DS;FS=0.0;HRun=7;HaplotypeScore=523.52;IndelType=I;MQ=39.97;MQ0=12;MQRankSum=-3.079;QD=0.5;ReadPosRankSum=1.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    0/1:95,7:89:89.89:90,0,2272
9    69420533    .    T    G    288.94    MQFilter40    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=1.587;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=31.33;MQ0=12;MQRankSum=0.427;QD=6.15;ReadPosRankSum=-1.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    0/1:30,17:47:99:319,0,519
9    69421761    rs2982947    A    G    175.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.85;MQ0=5;QD=11.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    1/1:0,15:15:23.96:208,24,0
9    69423641    .    T    G    58.69    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.868;DP=220;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.73;MQ0=97;MQRankSum=-4.777;QD=0.27;ReadPosRankSum=3.005;SNPEFF_AMINO_ACID_CHANGE=M646R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_69423202_69425560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD20A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357336    GT:AD:DP:GQ:PL    0/1:165,55:220:88.69:89,0,1547
9    69441043    .    C    T    616.99    MQFilter40    AC=2;AF=1.00;AN=2;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.92;MQ0=89;QD=5.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:52,69:121:80.69:650,81,0
9    69443051    .    T    C    1533.10    MQFilter40    AC=2;AF=1.00;AN=2;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.81;MQ0=23;QD=15.33;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,100:100:99:1566,188,0
9    69634461    .    G    C    103.82    MQFilter40    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.36;MQ0=13;MQRankSum=0.061;QD=3.71;ReadPosRankSum=1.164;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:23,5:28:99:134,0,306
9    69634526    .    C    A    129.47    MQFilter40    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=0.479;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.49;MQ0=17;MQRankSum=1.216;QD=3.32;ReadPosRankSum=0.848;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:32,7:39:99:159,0,461
9    69634615    rs144474040    C    A    1032.18    MQFilter40    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.226;DB;DP=172;Dels=0.0;FS=0.759;HRun=1;HaplotypeScore=0.0;MQ=35.69;MQ0=31;MQRankSum=-2.031;QD=6.0;ReadPosRankSum=0.514;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:124,48:172:99:1062,0,2741
9    69634630    rs140643950    A    T    1182.48    MQFilter40    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=1.764;DB;DP=195;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8661;MQ=37.65;MQ0=28;MQRankSum=-2.473;QD=6.06;ReadPosRankSum=0.218;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:141,54:195:99:1212,0,3491
9    69634664    rs188681778    G    C    1078.24    PASS    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=1.995;DB;DP=238;Dels=0.0;FS=15.861;HRun=1;HaplotypeScore=5.8142;MQ=40.58;MQ0=23;MQRankSum=-0.574;QD=4.53;ReadPosRankSum=1.129;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:178,60:238:99:1108,0,4288
9    69634684    .    C    T    1426.02    MQFilter40    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=2.53;DP=211;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=39.61;MQ0=21;MQRankSum=-1.425;QD=6.76;ReadPosRankSum=0.525;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:148,62:211:99:1456,0,3297
9    69634718    rs148293590    T    G    1234.07    MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=4.803;DB;DP=171;Dels=0.0;FS=0.72;HRun=2;HaplotypeScore=0.9789;MQ=35.91;MQ0=37;MQRankSum=-0.179;QD=7.17;ReadPosRankSum=1.292;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:120,50:171:99:1264,0,2405
9    69634756    rs150770607    T    C    867.43    MQFilter40    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.451;DB;DP=132;Dels=0.0;FS=4.456;HRun=0;HaplotypeScore=0.9789;MQ=25.86;MQ0=49;MQRankSum=1.458;QD=6.57;ReadPosRankSum=-1.429;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:83,49:132:99:897,0,1112
9    69634783    .    G    T    242.06    MQFilter40    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=0.498;DP=118;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=22.34;MQ0=56;MQRankSum=-0.799;QD=2.05;ReadPosRankSum=-0.957;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:97,21:118:99:272,0,1330
9    69634790    rs146864782    T    C    219.17    MQFilter40;SnpCluster    AB=0.817;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.535;DB;DP=109;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=22.65;MQ0=50;MQRankSum=-1.589;QD=2.01;ReadPosRankSum=-1.503;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:89,20:109:99:249,0,1272
9    69634796    rs141059565    A    G    73.40    MQFilter40;QDFilter2;SnpCluster    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=2.648;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.5;MQ0=47;MQRankSum=-1.329;QD=0.73;ReadPosRankSum=-0.011;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:74,25:100:99:103,0,1165
9    69634797    rs147037049    C    T    76.38    MQFilter40;QDFilter2;SnpCluster    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=4.463;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.46;MQ0=48;MQRankSum=-1.372;QD=0.75;ReadPosRankSum=-0.097;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:76,26:102:99:106,0,1084
9    69634860    .    A    C    41.51    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=19.05;MQ0=17;MQRankSum=-2.219;QD=1.48;ReadPosRankSum=0.876;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:21,7:28:71.50:71,0,121
9    69634903    .    T    G    192.35    MQFilter40    AC=2;AF=1.00;AN=2;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=27.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:225,21,0
9    69643479    .    C    G    56.43    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=-0.406;QD=9.41;ReadPosRankSum=1.537;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:3,3:6:86.43:86,0,97
9    69643508    rs182429678    C    T    111.38    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.1;MQ0=1;MQRankSum=-0.729;QD=11.14;ReadPosRankSum=1.159;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:5,5:10:99:141,0,128
9    69643638    .    G    A    87.63    MQFilter40    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.38;MQ0=14;MQRankSum=0.0;QD=4.17;ReadPosRankSum=1.754;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AQP7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453967    GT:AD:DP:GQ:PL    0/1:13,8:21:79.24:118,0,79
9    69652961    .    GT    G    416.43    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DP=16;FS=0.0;HRun=1;HaplotypeScore=77.5925;IndelType=D;MQ=11.03;MQ0=34;MQRankSum=0.303;QD=8.17;ReadPosRankSum=-0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL445665.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322495    GT:AD:DP:GQ:PL    0/1:32,19:16:99:455,0,140
9    69652991    .    C    T    118.55    MQFilter40;QDFilter2    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=7.27;MQ0=59;MQRankSum=0.437;QD=1.65;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL445665.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322495    GT:AD:DP:GQ:PL    0/1:51,21:72:35.17:149,0,35
9    69787709    rs3121246    T    C    85.10    MQFilter40    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=1.419;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.2;MQ0=0;MQRankSum=2.555;QD=3.4;ReadPosRankSum=0.203;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:19,6:25:99:115,0,238
9    69787727    rs4590541    A    G    44.25    MQFilter40;QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.581;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.32;MQ0=6;MQRankSum=2.905;QD=1.43;ReadPosRankSum=-2.285;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,7:31:74.25:74,0,221
9    69787829    .    G    C    131.44    MQFilter40    AB=0.917;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.54;MQ0=40;MQRankSum=3.142;QD=2.19;ReadPosRankSum=-0.698;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:55,5:60:36.07:161,0,36
9    69830583    rs77998646    T    C    50.60    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.315;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.98;MQ0=0;MQRankSum=-0.992;QD=2.53;ReadPosRankSum=-0.614;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    0/1:16,4:20:80.59:81,0,576
9    69830602    rs4122152    T    C    159    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.005;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.23;MQ0=0;MQRankSum=-0.884;QD=10.6;ReadPosRankSum=-1.945;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    0/1:9,6:15:99:189,0,332
9    69830637    rs73460851    T    C    31.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.358;QD=6.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    0/1:3,2:5:61.73:62,0,109
9    69830932    rs80236563    G    A    51.96    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=2.209;DB;DP=88;Dels=0.0;FS=5.273;HRun=1;HaplotypeScore=0.0;MQ=54.32;MQ0=4;MQRankSum=-5.258;QD=0.59;ReadPosRankSum=-0.907;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    0/1:72,16:88:81.95:82,0,2345
9    69831070    .    C    T    453.36    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.275;DP=68;Dels=0.0;FS=5.758;HRun=0;HaplotypeScore=0.9983;MQ=57.56;MQ0=1;MQRankSum=0.977;QD=6.67;ReadPosRankSum=-0.552;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    0/1:48,20:68:99:483,0,1591
9    69845804    .    C    G    49.45    MQFilter40;QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=0.99;DP=219;Dels=0.0;FS=1.675;HRun=1;HaplotypeScore=0.0;MQ=22.81;MQ0=47;MQRankSum=-0.59;QD=0.23;ReadPosRankSum=1.669;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    0/1:196,23:219:79.44:79,0,2717
9    69846339    rs1970019    C    A    940.25    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=43.35;MQ0=4;MQRankSum=-0.201;QD=10.56;ReadPosRankSum=-0.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    0/1:53,36:89:99:970,0,1442
9    69847351    .    G    A    57.42    MQFilter40;QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.746;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.79;MQ0=105;MQRankSum=1.053;QD=0.42;ReadPosRankSum=-0.186;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    0/1:104,32:136:87.41:87,0,131
9    69847800    .    C    T    526.11    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.95;MQ0=16;MQRankSum=1.502;QD=11.44;ReadPosRankSum=1.502;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-460N11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455242    GT:AD:DP:GQ:PL    1/1:8,38:46:48.08:559,48,0
9    69893978    .    T    C    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC125634.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438758    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
9    70087038    .    A    T    167.73    MQFilter40    AC=2;AF=1.00;AN=2;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.59;MQ0=39;QD=3.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-15J10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428213    GT:AD:DP:GQ:PL    1/1:29,16:45:18.05:201,18,0
9    70177655    .    G    C    258.26    MQFilter40;QDFilter2    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.878;DP=233;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=11.38;MQ0=109;MQRankSum=-0.792;QD=1.11;ReadPosRankSum=-0.438;SNPEFF_AMINO_ACID_CHANGE=P110R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_70175707_70178815;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4L5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377420    GT:AD:DP:GQ:PL    0/1:159,73:233:99:288,0,515
9    70177764    .    T    C    154.39    MQFilter40;QDFilter2    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.39;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5946;MQ=18.1;MQ0=9;MQRankSum=-0.419;QD=1.1;ReadPosRankSum=2.352;SNPEFF_AMINO_ACID_CHANGE=I74V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_70175707_70178815;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4L5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377420    GT:AD:DP:GQ:PL    0/1:105,34:140:99:184,0,1522
9    70183540    .    A    C    32.99    MQFilter40;QDFilter2    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.64;MQ0=64;MQRankSum=0.981;QD=0.31;ReadPosRankSum=-0.061;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXD4L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377420    GT:AD:DP:GQ:PL    0/1:81,25:107:62.98:63,0,537
9    70709594    rs112018827    T    C    38.77    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.57;MQ0=2;MQRankSum=-0.421;QD=3.88;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,4:10:68.76:69,0,95
9    70711381    .    G    C    81.39    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.84;MQ0=0;MQRankSum=1.109;QD=5.81;ReadPosRankSum=0.865;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,8:14:41.72:111,0,42
9    70871642    rs147255554    G    A    177.87    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.12;MQ0=2;MQRankSum=1.666;QD=16.17;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360171    GT:AD:DP:GQ:PL    0/1:4,7:11:1.65:207,0,2
9    70871930    .    TG    T    255.28    PASS    AC=2;AF=1.00;AN=2;DP=18;FS=0.0;HRun=2;HaplotypeScore=99.0354;IndelType=D;MQ=19.35;MQ0=7;QD=4.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360171    GT:AD:DP:GQ:PL    1/1:40,5:18:28.98:297,29,0
9    70871948    .    T    TTG    165.49    PASS    AB=0.902;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DP=8;FS=0.0;HRun=0;HaplotypeScore=65.8017;IndelType=I;MQ=17.19;MQ0=4;MQRankSum=1.517;QD=3.6;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360171    GT:AD:DP:GQ:PL    0/1:41,5:8:58.57:205,0,59
9    70972012    rs10867824    G    A    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=20.45;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431583    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
9    70993020    rs422163    T    G    529.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.12;MQ0=1;QD=26.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377314    GT:AD:DP:GQ:PL    1/1:0,20:20:48.14:562,48,0
9    70993067    rs391743    G    C    1716.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.89;MQ0=0;QD=29.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377314    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1749,138,0
9    70993081    rs145607092    G    C    791.44    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.477;DB;DP=71;Dels=0.0;FS=1.276;HRun=0;HaplotypeScore=1.7074;MQ=43.19;MQ0=0;MQRankSum=-0.711;QD=11.15;ReadPosRankSum=0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377314    GT:AD:DP:GQ:PL    0/1:41,30:71:99:821,0,1201
9    70999315    rs17081271    T    C    2127.41    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=5.406;DB;DP=145;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.748;MQ=55.15;MQ0=0;MQRankSum=1.553;QD=14.67;ReadPosRankSum=0.542;SNPEFF_AMINO_ACID_CHANGE=G142;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_70999314_70999460;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396392    GT:AD:DP:GQ:PL    0/1:70,75:145:99:2157,0,2080
9    71002554    rs2480145    G    C    438.88    MQFilter40    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.013;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.93;MQ0=5;MQRankSum=-4.196;QD=9.34;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377314    GT:AD:DP:GQ:PL    0/1:20,27:47:99:469,0,591
9    71114312    rs12685375    C    T    500.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472639    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:533,39,0
9    71223918    rs10869115    G    A    255.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=25.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-274B18.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413269    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:289,24,0
9    71478986    rs10869434    G    T    450.19    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.436;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=14.07;ReadPosRankSum=-1.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265382    GT:AD:DP:GQ:PL    0/1:17,15:32:99:480,0,617
9    71491821    rs4745358    G    A    622.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377284    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:655,48,0
9    71504120    .    G    GT    275.39    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DP=21;FS=0.0;HRun=7;HaplotypeScore=57.009;IndelType=I;MQ=59.17;MQ0=0;MQRankSum=-0.813;QD=13.11;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440050    GT:AD:DP:GQ:PL    0/1:11,10:21:99:314,0,126
9    71534678    rs11144305    A    G    269.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DB;DP=22;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=12.23;ReadPosRankSum=0.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265382    GT:AD:DP:GQ:PL    0/1:12,10:22:99:299,0,392
9    71538069    rs2027208    A    G    178.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265382    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:211,18,0
9    71538356    rs11144351    A    G    448.04    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=1.065;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.417;QD=23.58;ReadPosRankSum=1.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265382    GT:AD:DP:GQ:PL    0/1:5,14:19:99:478,0,146
9    71550096    rs4145886    G    A    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265382    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    71555492    rs10746973    A    G    353.09    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.468;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9594;MQ=59.03;MQ0=0;MQRankSum=-0.298;QD=8.21;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265382    GT:AD:DP:GQ:PL    0/1:26,17:43:99:383,0,872
9    71555522    rs10746974    C    T    593.59    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.334;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.839;QD=8.86;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265382    GT:AD:DP:GQ:PL    0/1:44,23:67:99:624,0,1483
9    71606315    rs2297231    G    A    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.7;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265382    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,110
9    71667986    rs7865353    G    A    63.55    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.296;QD=5.78;ReadPosRankSum=1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377270    GT:AD:DP:GQ:PL    0/1:7,3:11:93.54:94,0,238
9    71668197    rs3829062    T    C    1218.81    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.961;DB;DP=113;Dels=0.0;FS=3.561;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.13;QD=10.79;ReadPosRankSum=-0.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377270    GT:AD:DP:GQ:PL    0/1:66,47:113:99:1249,0,1993
9    71668427    rs75408130    A    G    146.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9997;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.96;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377270    GT:AD:DP:GQ:PL    1/1:1,6:7:15.03:179,15,0
9    71686181    rs9314854    T    C    1210.80    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=115;Dels=0.0;FS=0.726;HRun=0;HaplotypeScore=0.9979;MQ=59.8;MQ0=0;MQRankSum=-0.642;QD=10.53;ReadPosRankSum=1.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377270    GT:AD:DP:GQ:PL    0/1:69,45:115:99:1241,0,2081
9    71687400    rs3066313    C    CTG    279.74    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=49.1891;IndelType=I;MQ=62.36;MQ0=0;MQRankSum=1.001;QD=31.08;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377270    GT:AD:DP:GQ:PL    0/1:4,5:9:99:319,0,111
9    71687440    rs7025834    C    T    405.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.679;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.02;MQ0=0;MQRankSum=0.709;QD=19.32;ReadPosRankSum=-2.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377270    GT:AD:DP:GQ:PL    0/1:7,14:21:99:436,0,237
9    71687755    rs3831192    TTTG    T    373.51    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=94.5894;IndelType=D;MQ=60.43;MQ0=0;MQRankSum=-0.38;QD=14.94;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396364    GT:AD:DP:GQ:PL    0/1:14,11:25:99:413,0,495
9    71827618    rs34883177    T    C    101.65    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=7.82;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265384    GT:AD:DP:GQ:PL    0/1:7,6:13:99:132,0,248
9    71831398    rs2498417    T    C    1251.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265384    GT:AD:DP:GQ:PL    1/1:0,42:42:96.31:1285,96,0
9    71843023    rs2309428    C    A    536.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=28.21;SNPEFF_AMINO_ACID_CHANGE=D459E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_71842897_71843030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453658    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:569,48,0
9    71849314    .    CT    C    138.19    PASS    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.014;DP=44;FS=0.0;HRun=14;HaplotypeScore=238.8473;IndelType=D;MQ=55.66;MQ0=0;MQRankSum=1.173;QD=3.14;ReadPosRankSum=-0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265384    GT:AD:DP:GQ:PL    0/1:35,9:44:99:177,0,495
9    71850853    rs2275431    G    A    102.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.668;QD=10.22;ReadPosRankSum=-1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265384    GT:AD:DP:GQ:PL    0/1:5,5:10:99:132,0,185
9    71851208    rs2275430    A    G    59.31    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.53;MQ0=0;MQRankSum=-1.24;QD=3.95;ReadPosRankSum=1.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265384    GT:AD:DP:GQ:PL    0/1:11,4:15:89.30:89,0,370
9    71854769    rs2993823    C    G    70.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.75;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265384    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,108
9    71855122    rs7035000    G    A    79.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=13.2;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265384    GT:AD:DP:GQ:PL    0/1:2,4:6:64.91:109,0,65
9    71865932    rs2282335    G    A    2568.98    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=6.435;DB;DP=195;Dels=0.0;FS=7.82;HRun=0;HaplotypeScore=0.9665;MQ=59.88;MQ0=0;MQRankSum=0.515;QD=13.17;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265384    GT:AD:DP:GQ:PL    0/1:110,85:195:99:2599,0,3184
9    71986315    rs1034239    T    C    1619.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=26.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257515    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1652,144,0
9    71986316    rs1034238    G    A    394.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.509;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.327;QD=6.16;ReadPosRankSum=-0.639;SNPEFF_AMINO_ACID_CHANGE=V1I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_71986316_71986324;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377225    GT:AD:DP:GQ:PL    0/1:32,32:64:99:425,0,879
9    71990645    rs4351475    C    T    1043.40    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.958;DB;DP=72;Dels=0.0;FS=5.604;HRun=0;HaplotypeScore=2.3696;MQ=60.0;MQ0=0;MQRankSum=1.014;QD=14.49;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257515    GT:AD:DP:GQ:PL    0/1:35,37:72:99:1073,0,1086
9    71991028    rs10780326    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257515    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    72002911    rs5898077    T    TGTTATA    1671.12    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.491;DB;DP=51;FS=0.0;HRun=0;HaplotypeScore=249.7879;IndelType=I;MQ=51.38;MQ0=0;MQRankSum=-5.723;QD=32.77;ReadPosRankSum=0.23;SNPEFF_AMINO_ACID_CHANGE=C19CYS;SNPEFF_CODON_CHANGE=tgt/tGTTATAgt;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_9_72002837_72003366;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377216    GT:AD:DP:GQ:PL    0/1:38,12:51:99:1710,0,1879
9    72003036    rs867366    T    C    1047.27    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=2.591;DB;DP=83;Dels=0.0;FS=0.853;HRun=0;HaplotypeScore=0.9916;MQ=58.03;MQ0=0;MQRankSum=1.383;QD=12.62;ReadPosRankSum=0.102;SNPEFF_AMINO_ACID_CHANGE=G60;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_72002837_72003366;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377216    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1077,0,1251
9    72064749    rs2781532    T    C    526.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265381    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:559,48,0
9    72132199    rs11139063    G    A    31.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.87;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265381    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:61,0,36
9    72338180    rs11139996    T    C    1742.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340434    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1775,138,0
9    72338610    rs11139997    T    C    1125.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340434    GT:AD:DP:GQ:PL    1/1:0,37:37:96.28:1158,96,0
9    72374677    rs2274745    T    G    72.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=24.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340434    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
9    72435713    rs17439752    C    G    155.46    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.278;QD=14.13;ReadPosRankSum=-0.278;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466872    GT:AD:DP:GQ:PL    0/1:4,7:11:99:185,0,136
9    72501591    rs4237236    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    72501698    rs4407955    G    T    365.40    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-2.119;QD=13.05;ReadPosRankSum=0.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377197    GT:AD:DP:GQ:PL    0/1:15,13:28:99:395,0,502
9    72501775    rs138837310    A    C    588.10    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.397;DB;DP=47;Dels=0.0;FS=4.237;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.794;QD=12.51;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=S157;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_72501754_72501811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf135;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377197    GT:AD:DP:GQ:PL    0/1:26,21:47:99:618,0,770
9    72740974    rs1927112    A    G    606.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377182    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:639,54,0
9    72741312    rs1998972    G    A    821.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=S294N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_72741075_72741331;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377182    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:854,63,0
9    72772541    rs10116027    T    G    442.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377182    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:475,36,0
9    72783608    rs10780871    T    C    726.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377182    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:759,57,0
9    72785653    rs4744587    T    G    311.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377182    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:344,27,0
9    72787528    rs1927130    G    A    1679.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460688    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1713,126,0
9    72833624    rs1927096    C    T    372.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377182    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:406,30,0
9    72882642    rs7027209    A    G    88.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361138    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
9    72893298    rs10714271    GT    G    363.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=8;HaplotypeScore=39.1147;IndelType=D;MQ=60.0;MQ0=0;QD=25.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361138    GT:AD:DP:GQ:PL    1/1:0,14:14:42.07:406,42,0
9    72897434    rs1180116    G    A    2447.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=34.97;SNPEFF_AMINO_ACID_CHANGE=V306I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_72897338_72897499;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361138    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2481,187,0
9    72901096    rs1180123    T    C    2554.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=4.9202;MQ=59.27;MQ0=0;QD=28.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361138    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2587,205,0
9    72933958    rs7025228    G    C    400.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361138    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:434,33,0
9    72965438    rs1536957    A    G    870.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361138    GT:AD:DP:GQ:PL    1/1:0,23:24:66.22:904,66,0
9    73002648    rs7020167    C    G    498.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377126    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:531,39,0
9    73028142    rs147205860    C    A    334.85    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.882;DB;DP=29;Dels=0.0;FS=2.12;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.778;QD=11.55;ReadPosRankSum=0.675;SNPEFF_AMINO_ACID_CHANGE=E46D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_73027775_73029540;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377126    GT:AD:DP:GQ:PL    0/1:18,11:29:99:365,0,446
9    73150984    rs6560142    C    T    1827.22    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.376;DB;DP=134;Dels=0.0;FS=1.659;HRun=3;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.859;QD=13.64;ReadPosRankSum=-1.145;SNPEFF_AMINO_ACID_CHANGE=R1529Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_73149968_73152321;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377105    GT:AD:DP:GQ:PL    0/1:72,62:134:99:1857,0,2267
9    73151715    rs7033976    C    T    598.15    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.23;DB;DP=44;Dels=0.0;FS=1.203;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.158;QD=13.59;ReadPosRankSum=0.012;SNPEFF_AMINO_ACID_CHANGE=L1285;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_73149968_73152321;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377105    GT:AD:DP:GQ:PL    0/1:23,21:44:99:628,0,724
9    73151970    rs3739776    C    T    1002.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=4.969;DB;DP=98;Dels=0.0;FS=5.3;HRun=0;HaplotypeScore=5.4187;MQ=59.1;MQ0=0;MQRankSum=0.011;QD=10.23;ReadPosRankSum=-0.688;SNPEFF_AMINO_ACID_CHANGE=S1200;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_73149968_73152321;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377105    GT:AD:DP:GQ:PL    0/1:56,42:98:99:1033,0,1612
9    73164611    rs1889914    G    A    332.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.137;DB;DP=27;Dels=0.0;FS=2.187;HRun=2;HaplotypeScore=0.0;MQ=56.49;MQ0=0;MQRankSum=0.465;QD=12.31;ReadPosRankSum=1.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:15,12:27:99:362,0,359
9    73167597    rs10283892    C    A    567.02    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.508;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.02;QD=18.29;ReadPosRankSum=-0.547;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:12,19:31:99:597,0,413
9    73234066    rs7849400    G    A    425.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:459,33,0
9    73234884    rs3829095    G    C    339.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:373,30,0
9    73240312    rs7035025    C    G    1455.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1489,111,0
9    73250037    rs4322073    C    T    411.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:445,33,0
9    73253772    rs10868862    C    G    133.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
9    73255432    rs1538669    G    C    231.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:264,21,0
9    73391409    rs34030044    C    CA    453.28    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.578;DB;DP=26;FS=0.0;HRun=6;HaplotypeScore=54.8757;IndelType=I;MQ=60.42;MQ0=0;MQRankSum=-0.179;QD=17.43;ReadPosRankSum=1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:11,15:26:99:492,0,200
9    73408518    rs10868890    T    G    2992.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=M204L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_73408130_73408613;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455451    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3026,229,0
9    73442635    rs1034539    G    A    403.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.047;QD=22.41;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:6,12:18:99:433,0,154
9    73442724    rs1034538    C    T    624.76    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.282;DB;DP=48;Dels=0.0;FS=6.351;HRun=1;HaplotypeScore=0.9947;MQ=59.13;MQ0=0;MQRankSum=-1.339;QD=13.02;ReadPosRankSum=1.316;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:26,22:48:99:655,0,775
9    73457832    rs1337031    G    A    368.06    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.543;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.535;QD=16.0;ReadPosRankSum=-0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:9,14:23:99:398,0,278
9    73457861    rs1337030    A    G    518.74    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.596;DB;DP=30;Dels=0.0;FS=3.312;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.187;QD=17.29;ReadPosRankSum=2.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:14,16:30:99:549,0,442
9    73458045    rs3833697    T    TA    291.62    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.026;DB;DP=30;FS=0.0;HRun=10;HaplotypeScore=76.3647;IndelType=I;MQ=60.72;MQ0=0;MQRankSum=0.923;QD=9.72;ReadPosRankSum=-0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:17,13:30:99:331,0,242
9    73461337    rs7862440    T    A    1234.87    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.768;DB;DP=93;Dels=0.0;FS=2.762;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.509;QD=13.28;ReadPosRankSum=-0.699;SNPEFF_AMINO_ACID_CHANGE=A211;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_73461294_73461507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377110    GT:AD:DP:GQ:PL    0/1:51,42:93:99:1265,0,1672
9    73461558    rs10868907    G    C    236.18    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.334;QD=10.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357533    GT:AD:DP:GQ:PL    0/1:13,9:22:99:266,0,469
9    74319343    rs10869053    A    G    198.35    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.225;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.627;QD=14.17;ReadPosRankSum=1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537329    GT:AD:DP:GQ:PL    0/1:6,8:14:99:228,0,192
9    74326961    rs3739781    A    G    407.63    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.447;DB;DP=45;Dels=0.0;FS=13.75;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.585;QD=9.06;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377043    GT:AD:DP:GQ:PL    0/1:26,19:45:99:438,0,913
9    74331267    rs35467741    GA    G    130.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=11;HaplotypeScore=28.2532;IndelType=D;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377044    GT:AD:DP:GQ:PL    1/1:0,7:7:20.98:172,21,0
9    74331376    rs4745117    A    C    266.42    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.013;DB;DP=25;Dels=0.0;FS=2.481;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=10.66;ReadPosRankSum=-0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377044    GT:AD:DP:GQ:PL    0/1:14,11:25:99:296,0,505
9    74340772    rs11142976    T    C    35.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546219    GT:AD:DP:GQ:PL    0/1:4,2:6:65.40:65,0,146
9    74349917    rs140573186    CAA    C    392.09    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.651;DB;DP=56;FS=9.897;HRun=14;HaplotypeScore=334.5637;IndelType=D;MQ=58.71;MQ0=0;MQRankSum=0.268;QD=7.0;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377044    GT:AD:DP:GQ:PL    0/1:29,20:56:99:431,0,713
9    74360395    rs76670837    T    C    1099.56    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.572;DB;DP=88;Dels=0.0;FS=4.104;HRun=1;HaplotypeScore=1.86;MQ=59.05;MQ0=0;MQRankSum=0.913;QD=12.5;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=A191;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_74359934_74360495;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377044    GT:AD:DP:GQ:PL    0/1:46,42:88:99:1130,0,1454
9    74477617    rs10573097    TAAGA    T    587.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=51.3709;IndelType=D;MQ=49.96;MQ0=0;QD=58.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM108B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333421    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:630,30,0
9    74482046    rs7858585    A    C    121.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM108B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333421    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
9    74485285    rs1524381    C    T    247.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM108B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333421    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
9    74526540    rs4744647    T    A    1742.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=34.17;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356065    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1776,147,0
9    74526615    rs75032526    G    T    1470.32    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=124;Dels=0.0;FS=0.786;HRun=4;HaplotypeScore=2.4971;MQ=59.81;MQ0=0;MQRankSum=0.003;QD=11.86;ReadPosRankSum=0.269;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM108B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333421    GT:AD:DP:GQ:PL    0/1:68,56:124:99:1500,0,2190
9    74526978    rs10580392    GCA    G    930.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=75.3725;IndelType=D;MQ=62.41;MQ0=0;QD=42.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356065    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:972,66,0
9    74527096    rs10781048    T    C    81.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356065    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
9    74561883    rs10120169    G    A    264.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334731    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:297,21,0
9    74586309    rs7866397    C    T    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334731    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
9    74671719    rs13295099    T    C    514.37    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.116;DB;DP=48;Dels=0.0;FS=1.227;HRun=1;HaplotypeScore=0.9332;MQ=59.41;MQ0=0;MQRankSum=1.465;QD=10.72;ReadPosRankSum=0.908;SNPEFF_AMINO_ACID_CHANGE=K34;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_74671700_74671759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424431    GT:AD:DP:GQ:PL    0/1:25,23:48:99:544,0,751
9    74675343    rs10869090    A    G    378.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.844;DB;DP=35;Dels=0.0;FS=3.353;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.52;QD=10.8;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377024    GT:AD:DP:GQ:PL    0/1:20,15:35:99:408,0,594
9    74828973    rs17494333    A    G    205.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.66;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238018    GT:AD:DP:GQ:PL    0/1:7,7:14:99:235,0,249
9    74837931    rs34208420    G    A    295.52    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.254;QD=21.11;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238018    GT:AD:DP:GQ:PL    0/1:4,10:14:87.18:326,0,87
9    74838023    rs34979271    T    C    788.92    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=2.519;DB;DP=66;Dels=0.0;FS=10.353;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.111;QD=11.95;ReadPosRankSum=0.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238018    GT:AD:DP:GQ:PL    0/1:29,37:66:99:819,0,922
9    74840410    rs67449523    C    G    122.74    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=13.64;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238018    GT:AD:DP:GQ:PL    0/1:4,5:9:99:153,0,137
9    74840757    rs62562033    T    A    456.32    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.679;DB;DP=42;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=10.86;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238018    GT:AD:DP:GQ:PL    0/1:23,19:42:99:486,0,799
9    74845949    rs34354742    C    T    304.50    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.998;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9552;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=12.18;ReadPosRankSum=-1.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477618    GT:AD:DP:GQ:PL    0/1:14,11:25:99:334,0,487
9    74846187    rs35528537    TA    T    125.47    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=17;FS=0.0;HRun=14;HaplotypeScore=55.3922;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=0.919;QD=7.38;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414671    GT:AD:DP:GQ:PL    0/1:4,10:17:16.34:164,0,16
9    74855957    rs5898250    T    TA    140.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=12;FS=0.0;HRun=7;HaplotypeScore=39.6143;IndelType=I;MQ=60.9;MQ0=0;MQRankSum=-0.466;QD=11.71;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238018    GT:AD:DP:GQ:PL    0/1:6,6:12:99:180,0,101
9    74859952    rs35929343    AT    A    58.32    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=2.088;DB;DP=25;FS=0.0;HRun=11;HaplotypeScore=70.0985;IndelType=D;MQ=59.07;MQ0=0;MQRankSum=0.757;QD=2.33;ReadPosRankSum=1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238018    GT:AD:DP:GQ:PL    0/1:18,7:25:97.35:97,0,495
9    74862221    rs11143198    C    T    657.86    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=1.076;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.301;QD=21.93;ReadPosRankSum=1.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238018    GT:AD:DP:GQ:PL    0/1:11,19:30:99:688,0,353
9    74971076    rs118060322    G    T    247.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.72;MQ0=0;MQRankSum=0.311;QD=13.73;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376956    GT:AD:DP:GQ:PL    0/1:10,8:18:99:277,0,327
9    74971739    rs34407229    CT    C    125.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DB;DP=14;FS=0.0;HRun=15;HaplotypeScore=82.6253;IndelType=D;MQ=54.85;MQ0=0;MQRankSum=1.423;QD=8.96;ReadPosRankSum=0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376956    GT:AD:DP:GQ:PL    1/1:5,8:14:20:167,20,0
9    74974177    rs76548591    C    CTCT    373.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=15.4235;IndelType=I;MQ=41.96;MQ0=0;QD=62.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487330    GT:AD:DP:GQ:PL    1/1:1,5:6:18.06:416,18,0
9    74975136    rs2809270    T    C    1486.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.1259;MQ=55.83;MQ0=0;QD=28.58;SNPEFF_AMINO_ACID_CHANGE=G103;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_74975026_74975137;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376956    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1519,117,0
9    74975492    rs2146184    T    C    2824.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=37.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237937    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2858,208,0
9    74975711    rs1853276    T    C    1791.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.24;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237937    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1825,150,0
9    74975736    rs11143275    T    A    724.27    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.851;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.97;MQ0=0;MQRankSum=1.254;QD=16.84;ReadPosRankSum=-0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237937    GT:AD:DP:GQ:PL    0/1:17,26:43:99:754,0,578
9    74979593    rs2224603    G    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=13.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237937    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:70,6,0
9    75303484    rs56173757    C    T    93.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.133;QD=9.38;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297784    GT:AD:DP:GQ:PL    0/1:6,4:10:99:124,0,218
9    75303653    rs2589615    C    T    292.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.234;DB;DP=33;Dels=0.0;FS=3.666;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.095;QD=8.86;ReadPosRankSum=-0.134;SNPEFF_AMINO_ACID_CHANGE=D15;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_75303625_75303672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297784    GT:AD:DP:GQ:PL    0/1:22,11:33:99:322,0,639
9    75315438    rs1796993    G    A    695.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.64;DB;DP=72;Dels=0.0;FS=3.439;HRun=2;HaplotypeScore=2.8397;MQ=58.71;MQ0=0;MQRankSum=0.64;QD=9.66;ReadPosRankSum=-1.5;SNPEFF_AMINO_ACID_CHANGE=E75K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_75315434_75315559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542143    GT:AD:DP:GQ:PL    0/1:45,27:72:99:725,0,1279
9    75315641    rs66939074    TATATATATATATATATATACACACACACACACACATACAC    T    1073.19    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=391.9705;IndelType=D;MQ=36.75;MQ0=0;MQRankSum=0.747;QD=89.43;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297784    GT:AD:DP:GQ:PL    0/1:5,7:12:99:1112,0,104
9    75357542    rs7848136    A    G    46.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.65;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297784    GT:AD:DP:GQ:PL    0/1:1,3:4:29.76:77,0,30
9    75407159    rs17058153    T    C    2590.01    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=163;Dels=0.0;FS=3.092;HRun=0;HaplotypeScore=0.9469;MQ=59.86;MQ0=0;MQRankSum=3.737;QD=15.89;ReadPosRankSum=-1.104;SNPEFF_AMINO_ACID_CHANGE=M453T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_75407107_75407268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396235    GT:AD:DP:GQ:PL    0/1:71,92:163:99:2620,0,2146
9    75450851    .    TC    T    52.06    QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=3.819;DP=44;FS=30.885;HRun=1;HaplotypeScore=294.3137;IndelType=D;MQ=47.07;MQ0=0;MQRankSum=-2.37;QD=1.18;ReadPosRankSum=-2.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297784    GT:AD:DP:GQ:PL    0/1:38,6:44:91.09:91,0,557
9    75521060    rs348472    A    G    426.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297785    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:459,33,0
9    75524691    rs8187978    T    C    1284.56    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.924;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=15.86;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297785    GT:AD:DP:GQ:PL    0/1:40,41:81:99:1315,0,1221
9    75524784    rs63319    G    T    401.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297785    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:435,33,0
9    75543974    rs8187922    T    TAA    1069.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.42;DB;DP=42;FS=3.216;HRun=2;HaplotypeScore=106.2427;IndelType=I;MQ=59.42;MQ0=0;MQRankSum=0.919;QD=25.46;ReadPosRankSum=-0.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297785    GT:AD:DP:GQ:PL    0/1:21,20:42:99:1108,0,742
9    75554982    rs348449    G    A    53.77    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=1.09;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.335;QD=3.84;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297785    GT:AD:DP:GQ:PL    0/1:11,3:14:83.76:84,0,306
9    75779917    rs41306157    C    T    79.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.79;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415424    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:109,0,31
9    75782358    rs191023973    G    A    412.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=25;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.915;QD=16.5;ReadPosRankSum=-0.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456643    GT:AD:DP:GQ:PL    0/1:10,15:25:99:443,0,332
9    75782510    rs1342017    G    A    379.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.367;DB;DP=40;Dels=0.0;FS=3.901;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.124;QD=9.49;ReadPosRankSum=-1.808;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456643    GT:AD:DP:GQ:PL    0/1:24,16:40:99:410,0,853
9    75783937    rs3739959    A    G    1434.96    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.951;DB;DP=87;Dels=0.0;FS=17.609;HRun=0;HaplotypeScore=0.8667;MQ=58.93;MQ0=0;MQRankSum=-1.626;QD=16.49;ReadPosRankSum=2.064;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489109    GT:AD:DP:GQ:PL    0/1:41,46:87:99:1465,0,1236
9    75905808    rs4634723    T    C    116.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL449083.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408183    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
9    75906131    rs6560327    T    C    763.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.2;MQ0=0;QD=29.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL449083.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408183    GT:AD:DP:GQ:PL    1/1:0,26:26:66.19:796,66,0
9    75906317    rs4282636    A    C    165.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL449083.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408183    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
9    77245162    rs2146777    A    T    1142.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376896    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1176,87,0
9    77249896    rs7868717    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    77353300    rs506973    T    C    543.77    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=37;Dels=0.0;FS=3.726;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.7;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360774    GT:AD:DP:GQ:PL    0/1:15,22:37:99:574,0,527
9    77354230    rs4468002    G    A    304.33    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.987;DB;DP=27;Dels=0.0;FS=5.63;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.23;QD=11.27;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360774    GT:AD:DP:GQ:PL    0/1:17,10:27:99:334,0,498
9    77376647    rs2274924    T    C    941.13    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=62;Dels=0.0;FS=2.16;HRun=0;HaplotypeScore=1.8288;MQ=60.0;MQ0=0;MQRankSum=-1.11;QD=15.18;ReadPosRankSum=-0.46;SNPEFF_AMINO_ACID_CHANGE=K1579E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_77376612_77376724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361255    GT:AD:DP:GQ:PL    0/1:28,34:62:99:971,0,781
9    77377410    rs3750425    C    T    940.07    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=78;Dels=0.0;FS=0.998;HRun=1;HaplotypeScore=3.6369;MQ=59.7;MQ0=0;MQRankSum=1.264;QD=12.05;ReadPosRankSum=-0.255;SNPEFF_AMINO_ACID_CHANGE=V1056I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_77377268_77378050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    0/1:40,35:78:99:970,0,1344
9    77386857    rs34783728    T    TAA    285.76    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=61.8869;IndelType=I;MQ=59.51;MQ0=0;MQRankSum=0.318;QD=17.86;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    0/1:9,7:16:99:325,0,341
9    77386938    rs2027026    T    C    254.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
9    77391060    rs2274923    T    C    488    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.619;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-1.447;QD=14.35;ReadPosRankSum=-0.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    0/1:17,17:34:99:518,0,574
9    77397519    rs12339024    T    C    1011.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    1/1:0,28:29:78.25:1045,78,0
9    77403574    rs74431358    C    A    71.51    FSFilter60;QDFilter2    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.173;DB;DP=104;Dels=0.0;FS=84.677;HRun=2;HaplotypeScore=10.4458;MQ=47.12;MQ0=0;MQRankSum=-4.653;QD=0.69;ReadPosRankSum=0.868;SNPEFF_AMINO_ACID_CHANGE=V538F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_77403530_77403658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    0/1:45,59:104:99:101,0,1267
9    77403921    rs62569678    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    77407736    rs7858755    A    G    460.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    1/1:0,14:15:36.12:494,36,0
9    77415284    rs7859201    A    C    1838.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DB;DP=56;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-1.299;QD=32.83;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=L371;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_77415170_77415398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1872,102,0
9    77425526    rs12115672    C    G    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,73
9    77425638    rs17060550    A    C    332.97    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.288;QD=11.48;ReadPosRankSum=-0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    0/1:17,12:29:99:363,0,596
9    77427173    rs4300062    T    C    337.90    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=12.51;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312449    GT:AD:DP:GQ:PL    0/1:16,11:27:99:368,0,545
9    77442616    rs7045949    C    T    1223.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360774    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1257,93,0
9    77454821    rs12338822    G    A    37.29    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=7.46;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359047    GT:AD:DP:GQ:PL    0/1:1,4:5:22.52:67,0,23
9    77563087    rs2769058    C    T    688.46    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=59;Dels=0.0;FS=4.097;HRun=1;HaplotypeScore=1.9472;MQ=59.22;MQ0=0;MQRankSum=0.212;QD=11.67;ReadPosRankSum=0.588;SNPEFF_AMINO_ACID_CHANGE=Q154;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_77561497_77563122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376854    GT:AD:DP:GQ:PL    0/1:37,22:59:99:718,0,1091
9    77563175    rs34533883    GTTT    G    286.99    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;FS=0.0;HRun=7;HaplotypeScore=58.083;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=0.715;QD=20.5;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376854    GT:AD:DP:GQ:PL    0/1:6,8:14:99:326,0,360
9    77598901    rs138458998    A    G    80.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.04;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376837    GT:AD:DP:GQ:PL    0/1:2,3:5:58.88:110,0,59
9    77611258    rs10869466    A    G    246.61    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.317;QD=11.74;ReadPosRankSum=0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451153    GT:AD:DP:GQ:PL    0/1:11,10:21:99:277,0,387
9    77668902    rs11144201    A    G    229.39    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=24;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.724;QD=9.56;ReadPosRankSum=-0.976;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,10:24:99:259,0,422
9    77668969    rs773145    G    C    668.30    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=46;Dels=0.0;FS=2.64;HRun=1;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=14.53;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,25:46:99:698,0,622
9    77669152    rs13294415    G    C    76.07    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=8.45;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,4:9:99:106,0,182
9    77676285    rs11519    T    G    38.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.69;ReadPosRankSum=-1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482537    GT:AD:DP:GQ:PL    0/1:2,2:4:62.32:69,0,62
9    77681039    rs4357362    C    G    41.41    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=3.19;ReadPosRankSum=-0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    0/1:10,3:13:71.40:71,0,379
9    77681102    rs9722476    A    G    220.19    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.387;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5773;MQ=59.11;MQ0=0;MQRankSum=2.01;QD=8.47;ReadPosRankSum=-0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    0/1:17,9:26:99:250,0,516
9    77681179    rs7852863    C    T    1589.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1623,120,0
9    77681193    rs10869492    A    C    435.23    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=59.56;MQ0=0;MQRankSum=0.703;QD=8.37;ReadPosRankSum=0.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    0/1:33,19:52:99:465,0,1019
9    77681510    rs5898392    AC    A    95.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=9;HaplotypeScore=16.1583;IndelType=D;MQ=62.13;MQ0=0;QD=19.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:137,15,0
9    77681818    rs2273762    T    C    414.29    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.777;DB;DP=34;Dels=0.0;FS=2.285;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.397;QD=12.18;ReadPosRankSum=-0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    0/1:18,16:34:99:444,0,622
9    77684439    rs13289688    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    77684690    rs3752955    A    C    1547.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=T119;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_77684658_77684729;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1581,117,0
9    77692555    rs68062524    CT    C    120.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=12;HaplotypeScore=35.5836;IndelType=D;MQ=58.63;MQ0=0;QD=13.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361092    GT:AD:DP:GQ:PL    1/1:3,6:9:20.91:162,21,0
9    77697929    rs2273767    C    G    254.57    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=27;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.14;QD=9.43;ReadPosRankSum=-0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490321    GT:AD:DP:GQ:PL    0/1:14,13:27:99:285,0,486
9    77745424    rs2295861    T    C    621.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346234    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:654,48,0
9    77752675    rs2025159    A    G    132.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346234    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
9    77761642    rs2146044    T    C    612.04    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=33;Dels=0.0;FS=5.222;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;MQRankSum=1.029;QD=18.55;ReadPosRankSum=-1.141;SNPEFF_AMINO_ACID_CHANGE=D210;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_77761599_77762181;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346234    GT:AD:DP:GQ:PL    0/1:12,21:33:99:642,0,333
9    77761857    rs1052199    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346234    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    78601268    rs1538843    G    A    521.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:555,42,0
9    78686818    rs2297344    G    T    1334.48    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=111;Dels=0.0;FS=1.831;HRun=0;HaplotypeScore=1.9662;MQ=59.62;MQ0=0;MQRankSum=0.006;QD=12.02;ReadPosRankSum=0.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    0/1:63,48:111:99:1364,0,1875
9    78748962    rs141353765    ACT    A    457.41    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.85;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=176.7452;IndelType=D;MQ=56.12;MQ0=0;MQRankSum=-0.187;QD=14.29;ReadPosRankSum=-0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    0/1:20,12:31:99:496,0,775
9    78748980    .    C    CT    221.96    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DP=41;FS=2.483;HRun=12;HaplotypeScore=271.7948;IndelType=I;MQ=56.49;MQ0=0;MQRankSum=0.23;QD=5.28;ReadPosRankSum=2.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    0/1:24,13:41:99:261,0,239
9    78773953    rs2297342    G    A    1844.39    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=3.567;DB;DP=147;Dels=0.0;FS=2.326;HRun=0;HaplotypeScore=2.4167;MQ=59.69;MQ0=0;MQRankSum=-0.873;QD=12.55;ReadPosRankSum=0.064;SNPEFF_AMINO_ACID_CHANGE=S168;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78773899_78774087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424854    GT:AD:DP:GQ:PL    0/1:75,72:147:99:1874,0,2174
9    78790133    .    G    A    252.86    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.49;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9966;MQ=57.29;MQ0=1;MQRankSum=-0.531;QD=12.64;ReadPosRankSum=1.674;SNPEFF_AMINO_ACID_CHANGE=G663E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78789902_78790478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376767    GT:AD:DP:GQ:PL    0/1:11,9:20:99:283,0,328
9    78790138    rs11999771    A    G    216.80    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.572;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=55.91;MQ0=2;MQRankSum=-0.694;QD=10.32;ReadPosRankSum=0.939;SNPEFF_AMINO_ACID_CHANGE=K665E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78789902_78790478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376767    GT:AD:DP:GQ:PL    0/1:11,10:21:99:247,0,312
9    78790153    rs80291077    A    G    378.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=53.75;MQ0=2;MQRankSum=1.448;QD=27.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000396108    GT:AD:DP:GQ:PL    1/1:1,13:14:33.10:411,33,0
9    78790182    rs62556619    G    C    133.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.93;MQ0=2;MQRankSum=0.742;QD=14.87;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=G678R;SNPEFF_CODON_CHANGE=Gga/Cga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78790155_78790478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396108    GT:AD:DP:GQ:PL    1/1:2,7:9:15.03:167,15,0
9    78790187    rs10118321    G    C    108.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.53;MQ0=2;QD=13.56;SNPEFF_AMINO_ACID_CHANGE=M679I;SNPEFF_CODON_CHANGE=atG/atC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78790155_78790478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396108    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:141,12,0
9    78796733    rs10119622    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
9    78799566    rs1537183    C    T    1312.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    1/1:0,37:37:96.32:1346,96,0
9    78803466    rs7046850    T    C    1070.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1104,84,0
9    78803931    rs2270571    A    T    97.09    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.271;QD=7.47;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    0/1:8,5:13:99:127,0,261
9    78804206    .    G    GAAAAT    726.08    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.62;DP=20;FS=0.0;HRun=0;HaplotypeScore=80.7422;IndelType=I;MQ=55.45;MQ0=0;MQRankSum=-1.413;QD=36.3;ReadPosRankSum=-0.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376752    GT:AD:DP:GQ:PL    0/1:11,9:20:99:765,0,494
9    78808323    .    T    TAAAA    955.25    PASS    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=3.943;DP=56;FS=3.019;HRun=5;HaplotypeScore=476.2574;IndelType=I;MQ=44.98;MQ0=0;MQRankSum=-1.012;QD=17.06;ReadPosRankSum=0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:45,10:56:99:994,0,331
9    78808329    rs72444475    G    GAAAA    2683.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=6;HaplotypeScore=305.7943;IndelType=I;MQ=43.47;MQ0=0;QD=53.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:29,20:50:99:2725,120,0
9    78809478    rs17179121    T    G    152.32    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.76;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:2,5:7:62.22:182,0,62
9    78809646    rs34619779    T    C    1400.22    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.343;DB;DP=105;Dels=0.0;FS=0.733;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.602;QD=13.34;ReadPosRankSum=1.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:54,51:105:99:1430,0,1652
9    78809822    rs7019429    A    G    365.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:399,30,0
9    78819998    rs10869732    T    C    2654.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.04;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2688,208,0
9    78820011    rs7851394    G    A    3213.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:0,89:90:99:3247,244,0
9    78820265    rs10869733    G    C    216.80    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.736;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.82;MQ0=0;MQRankSum=-0.033;QD=9.43;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:10,13:23:99:247,0,158
9    78820270    rs10781345    T    C    200.59    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=-0.456;QD=10.03;ReadPosRankSum=1.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:9,11:20:99:231,0,118
9    78842380    rs1390141    A    G    560.53    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.899;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.664;MQ=59.22;MQ0=0;MQRankSum=-0.067;QD=9.5;ReadPosRankSum=0.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:33,24:58:99:591,0,1034
9    78848542    rs903545    C    G    2242.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2275,172,0
9    78848554    rs7854396    G    C    1039.67    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.401;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.503;QD=17.04;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:26,35:61:99:1070,0,761
9    78854041    rs61747961    G    A    358.43    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.242;DB;DP=37;Dels=0.0;FS=3.179;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.058;QD=9.69;ReadPosRankSum=0.506;SNPEFF_AMINO_ACID_CHANGE=A1011;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78853875_78854081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545128    GT:AD:DP:GQ:PL    0/1:21,16:37:99:388,0,654
9    78911728    .    G    A    1531.19    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.335;DP=103;Dels=0.0;FS=0.752;HRun=0;HaplotypeScore=1.7465;MQ=59.46;MQ0=0;MQRankSum=2.26;QD=14.87;ReadPosRankSum=0.052;SNPEFF_AMINO_ACID_CHANGE=R1157H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78911581_78911781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545128    GT:AD:DP:GQ:PL    0/1:49,53:103:99:1561,0,1415
9    78911794    rs35788992    C    CA    1217.31    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=1.829;DB;DP=84;FS=2.063;HRun=6;HaplotypeScore=279.4734;IndelType=I;MQ=60.02;MQ0=0;MQRankSum=0.221;QD=14.32;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:44,41:84:99:1256,0,954
9    78917015    rs11451259    T    TA    217.66    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=14;FS=2.963;HRun=9;HaplotypeScore=46.4955;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=0.133;QD=15.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:5,9:14:88.13:257,0,88
9    78925814    rs2257775    C    A    449.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:483,36,0
9    78936564    rs11144829    G    A    607.39    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.078;DB;DP=48;Dels=0.0;FS=1.271;HRun=1;HaplotypeScore=1.9877;MQ=58.64;MQ0=0;MQRankSum=1.309;QD=12.65;ReadPosRankSum=0.499;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:27,21:48:99:637,0,870
9    78937901    rs55903217    T    C    191.83    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=34;Dels=0.0;FS=4.218;HRun=2;HaplotypeScore=0.9832;MQ=59.32;MQ0=0;MQRankSum=-0.192;QD=5.64;ReadPosRankSum=-0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:20,14:34:99:222,0,645
9    78937903    rs55805812    C    T    191.83    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.277;DB;DP=34;Dels=0.0;FS=4.218;HRun=1;HaplotypeScore=0.9832;MQ=59.32;MQ0=0;MQRankSum=0.402;QD=5.64;ReadPosRankSum=0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:20,14:34:99:222,0,653
9    78937929    rs112277357    AC    A    642.64    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=6.177;DB;DP=54;FS=7.621;HRun=6;HaplotypeScore=347.1434;IndelType=D;MQ=59.35;MQ0=0;MQRankSum=1.235;QD=11.9;ReadPosRankSum=-1.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:28,26:54:99:682,0,867
9    78937974    rs3001772    C    T    1067.50    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=70;Dels=0.0;FS=3.942;HRun=0;HaplotypeScore=1.5449;MQ=59.16;MQ0=0;MQRankSum=1.116;QD=15.25;ReadPosRankSum=0.498;SNPEFF_AMINO_ACID_CHANGE=T1043M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78937968_78938204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424854    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1097,0,824
9    78938043    rs2495207    G    A    734.38    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.103;DB;DP=63;Dels=0.0;FS=2.982;HRun=0;HaplotypeScore=3.6469;MQ=59.27;MQ0=0;MQRankSum=-0.02;QD=11.66;ReadPosRankSum=0.943;SNPEFF_AMINO_ACID_CHANGE=R1066H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78937968_78938204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424854    GT:AD:DP:GQ:PL    0/1:24,33:63:99:764,0,440
9    78938186    rs2803429    G    C    651.88    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.97;DB;DP=49;Dels=0.0;FS=3.359;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=13.3;ReadPosRankSum=0.87;SNPEFF_AMINO_ACID_CHANGE=E1114Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78937968_78938204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424854    GT:AD:DP:GQ:PL    0/1:25,24:49:99:682,0,789
9    78938236    rs55762660    G    A    403.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.953;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.631;QD=14.41;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:14,14:28:99:434,0,467
9    78938246    rs2803430    T    C    367.22    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.591;QD=14.12;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:14,12:26:99:397,0,451
9    78938256    rs2259775    C    G    164.75    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.916;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.141;QD=7.49;ReadPosRankSum=1.621;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:15,7:22:99:195,0,519
9    78942956    rs2259969    A    G    2272.67    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.86;DB;DP=185;Dels=0.0;FS=1.16;HRun=0;HaplotypeScore=1.7825;MQ=59.75;MQ0=0;MQRankSum=-0.543;QD=12.28;ReadPosRankSum=-0.01;SNPEFF_AMINO_ACID_CHANGE=S1130;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78942925_78943155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424854    GT:AD:DP:GQ:PL    0/1:102,83:185:99:2303,0,3117
9    78947200    rs11144834    A    G    95.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=9.55;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,208
9    78965491    rs2803407    C    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    78965993    rs2257220    G    A    273.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:306,24,0
9    78968751    rs7036539    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376754    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
9    78969059    rs7036921    C    A    982.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_AMINO_ACID_CHANGE=D1399E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78968949_78969135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424854    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1015,75,0
9    78973463    rs17721466    T    G    1553.50    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.404;DB;DP=145;Dels=0.0;FS=7.7;HRun=1;HaplotypeScore=0.0;MQ=59.84;MQ0=0;MQRankSum=-2.069;QD=10.71;ReadPosRankSum=0.605;SNPEFF_AMINO_ACID_CHANGE=P1436;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_78973429_78974292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424854    GT:AD:DP:GQ:PL    0/1:82,63:145:99:1583,0,2436
9    79003324    rs2501926    G    A    350.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257452    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:384,30,0
9    79003440    rs2501924    G    A    1253.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257452    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1287,99,0
9    79003781    rs2490580    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257452    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    79009106    rs2490582    A    C    168.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_AMINO_ACID_CHANGE=I1M;SNPEFF_CODON_CHANGE=atT/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79009006_79009444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257452    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
9    79014170    rs7036849    T    C    2048.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6732;MQ=50.08;MQ0=1;MQRankSum=1.347;QD=25.94;ReadPosRankSum=0.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257452    GT:AD:DP:GQ:PL    1/1:2,77:79:99:2082,195,0
9    79014173    rs7033581    A    G    2031.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=6.5053;MQ=50.4;MQ0=1;QD=24.78;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257452    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2065,189,0
9    79118661    rs1057419    A    G    98.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=8.23;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480311    GT:AD:DP:GQ:PL    0/1:8,4:12:99:129,0,294
9    79240050    rs700809    T    C    1143.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422033    GT:AD:DP:GQ:PL    1/1:0,39:39:96.29:1177,96,0
9    79251229    rs561450    T    C    175.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223609    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
9    79251600    rs582011    T    A    161.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223609    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
9    79252080    rs584315    T    C    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494975    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
9    79252101    rs584341    A    C    176.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494975    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
9    79259344    rs678894    A    G    363.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488346    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:397,30,0
9    79259402    rs5898493    A    AG    1205.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=71.9385;IndelType=I;MQ=59.14;MQ0=0;QD=44.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488346    GT:AD:DP:GQ:PL    1/1:2,25:27:78.27:1248,78,0
9    79259592    rs511040    C    T    3556.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223609    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3557,268,0
9    79259850    rs512951    A    G    1881.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223609    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1914,150,0
9    79306787    rs786597    T    C    35.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.736;QD=7.01;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223609    GT:AD:DP:GQ:PL    0/1:3,2:5:31.62:65,0,32
9    79306919    rs498266    G    A    499.08    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.481;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=58.44;MQ0=0;MQRankSum=-0.441;QD=11.88;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223609    GT:AD:DP:GQ:PL    0/1:22,20:42:99:529,0,675
9    79307176    rs500952    G    C    172.72    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=15;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=11.51;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376718    GT:AD:DP:GQ:PL    0/1:8,7:15:99:203,0,279
9    79318375    rs11267615    GGTGACAGCCTGCAAC    G    6158.02    PASS    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=10.572;DB;DP=163;FS=9.994;HRun=0;HaplotypeScore=2035.0694;IndelType=D;MQ=53.23;MQ0=0;MQRankSum=-7.308;QD=37.78;ReadPosRankSum=1.288;SNPEFF_AMINO_ACID_CHANGE=TLQAVT2354T;SNPEFF_CODON_CHANGE=acgttgcaggctgtcacc/acc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_9_79318253_79319015;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:102,61:163:99:6158,0,20439
9    79318471    rs560094    C    T    1310.95    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.403;DB;DP=114;Dels=0.0;FS=1.567;HRun=0;HaplotypeScore=2.5114;MQ=56.17;MQ0=0;MQRankSum=-3.108;QD=11.5;ReadPosRankSum=2.08;SNPEFF_AMINO_ACID_CHANGE=L2327;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79318253_79319015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:66,48:114:99:1341,0,2154
9    79318677    rs561970    T    C    1797.17    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.166;DB;DP=129;Dels=0.0;FS=3.223;HRun=1;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-0.417;QD=13.93;ReadPosRankSum=0.313;SNPEFF_AMINO_ACID_CHANGE=S2259G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79318253_79319015;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:63,66:129:99:1827,0,2115
9    79318921    rs620985    A    G    2998.96    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=5.894;DB;DP=205;DS;Dels=0.0;FS=5.069;HRun=0;HaplotypeScore=0.6651;MQ=59.44;MQ0=0;MQRankSum=-0.311;QD=14.63;ReadPosRankSum=-1.031;SNPEFF_AMINO_ACID_CHANGE=C2177;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79318253_79319015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:107,97:205:99:3029,0,3400
9    79318998    rs620552    A    G    1863.65    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.753;DB;DP=129;Dels=0.0;FS=3.474;HRun=1;HaplotypeScore=1.7323;MQ=59.46;MQ0=0;MQRankSum=0.468;QD=14.45;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=S2152P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79318253_79319015;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:67,62:129:99:1894,0,2201
9    79319050    rs620476    A    C    1216.56    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.303;DB;DP=98;Dels=0.0;FS=6.489;HRun=0;HaplotypeScore=2.3322;MQ=59.4;MQ0=0;MQRankSum=-0.87;QD=12.41;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376718    GT:AD:DP:GQ:PL    0/1:50,48:98:99:1247,0,1641
9    79319130    rs67650325    AT    A    143.32    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;FS=0.0;HRun=4;HaplotypeScore=64.0808;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=0.143;QD=11.02;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376718    GT:AD:DP:GQ:PL    0/1:7,6:13:99:182,0,176
9    79319560    rs618145    A    C    536.45    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=1.842;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5767;MQ=57.95;MQ0=0;MQRankSum=-0.691;QD=16.76;ReadPosRankSum=-1.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376718    GT:AD:DP:GQ:PL    0/1:13,19:32:99:566,0,432
9    79320640    rs512110    C    T    1460.67    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=2.522;DB;DP=124;Dels=0.0;FS=1.48;HRun=0;HaplotypeScore=2.3683;MQ=59.81;MQ0=0;MQRankSum=0.294;QD=11.78;ReadPosRankSum=1.059;SNPEFF_AMINO_ACID_CHANGE=A1825T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:73,51:124:99:1491,0,2053
9    79321276    rs517634    T    C    2774.08    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.801;DB;DP=201;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6174;MQ=59.56;MQ0=0;MQRankSum=-0.204;QD=13.8;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=T1613A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:101,99:201:99:2804,0,2883
9    79321871    rs577993    C    T    553.62    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.297;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.298;QD=9.08;ReadPosRankSum=0.269;SNPEFF_AMINO_ACID_CHANGE=T1414;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:41,20:61:99:584,0,1268
9    79322068    rs683866    G    T    1525.65    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=129;Dels=0.0;FS=4.358;HRun=1;HaplotypeScore=1.4725;MQ=59.82;MQ0=0;MQRankSum=0.675;QD=11.83;ReadPosRankSum=0.612;SNPEFF_AMINO_ACID_CHANGE=H1349N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:73,56:129:99:1556,0,2317
9    79322674    rs680775    A    G    1018.33    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.13;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.42;MQ0=0;MQRankSum=-0.03;QD=11.57;ReadPosRankSum=-1.392;SNPEFF_AMINO_ACID_CHANGE=C1147R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:47,41:88:99:1048,0,1487
9    79322720    rs680729    A    G    1376.49    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=102;Dels=0.0;FS=6.384;HRun=0;HaplotypeScore=4.449;MQ=59.27;MQ0=0;MQRankSum=-0.307;QD=13.5;ReadPosRankSum=0.273;SNPEFF_AMINO_ACID_CHANGE=D1131;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:49,53:102:99:1406,0,1476
9    79324135    rs11267622    A    ATGACTGTTGCAG    4842.68    PASS    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=2.12;DB;DP=108;FS=3.145;HRun=0;HaplotypeScore=987.1788;IndelType=I;MQ=51.47;MQ0=0;MQRankSum=-5.646;QD=44.84;ReadPosRankSum=-0.808;SNPEFF_AMINO_ACID_CHANGE=S1017SCNSQ;SNPEFF_CODON_CHANGE=tca/tcCTGCAACAGTCAa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422033    GT:AD:DP:GQ:PL    0/1:86,19:108:99:4843,0,3903
9    79324179    rs530978    G    A    602.78    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.08;DB;DP=103;Dels=0.0;FS=1.601;HRun=0;HaplotypeScore=3.7849;MQ=54.73;MQ0=0;MQRankSum=-4.256;QD=5.85;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=T1003M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422033    GT:AD:DP:GQ:PL    0/1:59,43:103:99:633,0,1942
9    79324741    rs557352    T    C    1796.66    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=3.661;DB;DP=143;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.1895;MQ=59.38;MQ0=0;MQRankSum=2.632;QD=12.56;ReadPosRankSum=-2.061;SNPEFF_AMINO_ACID_CHANGE=N458D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:72,71:143:99:1827,0,2017
9    79325558    rs600859    G    C    829.39    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=69;Dels=0.0;FS=3.451;HRun=0;HaplotypeScore=2.5237;MQ=59.39;MQ0=0;MQRankSum=-1.088;QD=12.02;ReadPosRankSum=0.006;SNPEFF_AMINO_ACID_CHANGE=T185;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:38,31:69:99:859,0,1228
9    79325615    rs611461    A    G    1130.35    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.33;DB;DP=78;Dels=0.0;FS=2.122;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.038;QD=14.49;ReadPosRankSum=0.414;SNPEFF_AMINO_ACID_CHANGE=S166;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79319677_79326274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428286    GT:AD:DP:GQ:PL    0/1:33,45:78:99:1160,0,919
9    79328404    rs71354672    TG    T    739.29    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=29;FS=1.898;HRun=1;HaplotypeScore=78.9505;IndelType=D;MQ=59.73;MQ0=0;MQRankSum=-0.024;QD=25.49;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376718    GT:AD:DP:GQ:PL    0/1:8,21:29:99:778,0,283
9    79441254    rs7341854    C    G    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376713    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,72
9    79469166    rs41304224    C    T    342.99    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.441;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.734;QD=13.72;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRUNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376713    GT:AD:DP:GQ:PL    0/1:13,12:25:99:373,0,458
9    79792438    rs12349389    G    C    30.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_79792361_79792720;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360280    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:61,0,24
9    79814799    rs12552898    A    G    1102.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.9;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,34:34:96.28:1135,96,0
9    79816489    rs117478720    T    C    33.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.23;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:4,4:8:63.82:64,0,142
9    79820141    rs113819612    C    CT    902.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=47.5985;IndelType=I;MQ=59.93;MQ0=0;QD=45.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:944,60,0
9    79836406    rs7040714    G    A    83.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
9    79861960    rs2022444    G    A    113.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
9    79862019    rs117366351    T    C    92.62    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=8.42;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:6,5:11:99:123,0,204
9    79862502    rs10115162    T    C    268.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:302,27,0
9    79865187    rs2021998    G    A    1211.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,32:32:93.30:1245,93,0
9    79867288    rs12335955    T    C    742    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.41;DB;DP=50;Dels=0.0;FS=1.24;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=14.84;ReadPosRankSum=0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:25,25:50:99:772,0,703
9    79888396    rs2050831    A    G    128.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
9    79890727    rs7041795    C    T    115.06    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=1.396;DB;DP=12;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=1.8997;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=9.59;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:2,10:12:10.53:145,0,11
9    79891006    rs78048112    T    C    1023.69    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.734;DB;DP=68;Dels=0.0;FS=0.949;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=15.05;ReadPosRankSum=-0.835;SNPEFF_AMINO_ACID_CHANGE=V898A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79890981_79891137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:36,32:68:99:1054,0,1094
9    79891237    rs7030802    T    G    131.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
9    79896655    rs140324455    GTA    G    185.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=31.6954;IndelType=D;MQ=64.48;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,6:7:20.89:227,21,0
9    79897117    rs11145366    G    A    1277.79    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.205;DB;DP=88;Dels=0.0;FS=0.831;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.313;QD=14.52;ReadPosRankSum=-0.338;SNPEFF_AMINO_ACID_CHANGE=P1015;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79897037_79897190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:42,46:88:99:1308,0,1232
9    79897218    rs143298316    CT    C    124    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=1.655;DB;DP=29;FS=0.0;HRun=13;HaplotypeScore=135.5731;IndelType=D;MQ=59.16;MQ0=0;MQRankSum=-0.317;QD=4.28;ReadPosRankSum=-1.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:17,11:29:99:163,0,214
9    79910414    rs1317304    G    T    658.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:691,51,0
9    79910420    rs41289963    A    G    311.59    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=18;Dels=0.0;FS=7.375;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=16.4;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:8,10:18:99:342,0,268
9    79922839    rs2275549    A    G    491.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:525,39,0
9    79929795    rs7855014    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    79935953    rs1890899    A    G    87.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423463    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
9    79936756    .    TTTTTTG    T    508.71    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DP=24;FS=0.0;HRun=0;HaplotypeScore=148.0966;IndelType=D;MQ=48.33;MQ0=0;MQRankSum=-3.464;QD=21.2;ReadPosRankSum=0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423463    GT:AD:DP:GQ:PL    0/1:15,9:24:99:548,0,572
9    79952468    rs12348097    A    T    781.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=-0.99;QD=26.95;ReadPosRankSum=0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:1,27:29:27.44:814,27,0
9    79954404    .    TG    T    1020.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;FS=0.0;HRun=1;HaplotypeScore=411.8641;IndelType=D;MQ=40.85;MQ0=0;MQRankSum=-1.155;QD=28.34;ReadPosRankSum=-0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:23,13:36:63.53:1062,64,0
9    79954409    .    TG    T    1057.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;FS=0.0;HRun=1;HaplotypeScore=409.2784;IndelType=D;MQ=40.85;MQ0=0;MQRankSum=-1.348;QD=29.38;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:27,9:36:75.09:1100,75,0
9    79954545    rs7025532    T    C    1193.07    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.883;DB;DP=72;Dels=0.0;FS=2.053;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=1.246;QD=16.57;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=D2125;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79954432_79954827;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376636    GT:AD:DP:GQ:PL    0/1:30,42:72:99:1223,0,911
9    79955301    rs183040221    G    C    1025.55    HaplotypeScoreFilter13    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=1.758;DB;DP=55;Dels=0.0;FS=4.447;HRun=0;HaplotypeScore=50.9921;MQ=60.59;MQ0=0;MQRankSum=-2.105;QD=18.65;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:21,34:55:99:1056,0,664
9    79955305    rs140476942    A    AT    1748.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=9;HaplotypeScore=270.1092;IndelType=I;MQ=61.25;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:5,55:60:99:1791,162,0
9    79960141    rs7035855    G    A    1535.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=37.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539950    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1568,114,0
9    79966124    rs10491844    G    A    378.79    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=4.0;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.775;QD=16.47;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:10,13:23:99:409,0,282
9    79968293    .    G    GT    95.83    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DP=27;FS=0.0;HRun=15;HaplotypeScore=229.0153;IndelType=I;MQ=49.76;MQ0=0;MQRankSum=-0.702;QD=3.55;ReadPosRankSum=-1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:15,8:27:99:135,0,118
9    79974399    rs7043232    G    A    252.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:286,21,0
9    79975661    rs117318023    A    G    151.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=15.11;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:4,6:10:99:181,0,140
9    79985653    rs3841736    T    TA    245.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=36.8955;IndelType=I;MQ=58.24;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    1/1:1,6:7:21.07:287,21,0
9    79986015    rs17081163    A    G    196.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.18;DB;DP=27;Dels=0.0;FS=3.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=7.29;ReadPosRankSum=-0.18;SNPEFF_AMINO_ACID_CHANGE=P2970;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79985942_79986065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376636    GT:AD:DP:GQ:PL    0/1:18,9:27:99:227,0,516
9    79986057    rs3737289    A    G    769.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_AMINO_ACID_CHANGE=G2984;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_79985942_79986065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376636    GT:AD:DP:GQ:PL    1/1:0,26:26:63.20:803,63,0
9    79999547    rs113432324    GTGA    G    327.14    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.493;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=167.3607;IndelType=D;MQ=59.42;MQ0=0;MQRankSum=-0.753;QD=8.18;ReadPosRankSum=0.141;SNPEFF_AMINO_ACID_CHANGE=SD3079S;SNPEFF_CODON_CHANGE=agtgat/agt;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_9_79999501_80000107;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357409    GT:AD:DP:GQ:PL    0/1:30,10:40:99:366,0,916
9    80018376    rs12352196    G    C    321.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360280    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
9    80020874    rs117983287    C    A    996.75    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.68;DB;DP=69;Dels=0.0;FS=12.956;HRun=1;HaplotypeScore=0.7887;MQ=57.34;MQ0=0;MQRankSum=0.828;QD=14.45;ReadPosRankSum=-1.22;SNPEFF_AMINO_ACID_CHANGE=H3085N;SNPEFF_CODON_CHANGE=Cat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_80020780_80020903;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376636    GT:AD:DP:GQ:PL    0/1:35,34:69:99:1027,0,1178
9    80021040    .    A    ATCTT    367.22    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DP=14;FS=3.979;HRun=0;HaplotypeScore=89.9463;IndelType=I;MQ=48.1;MQ0=0;MQRankSum=-1.568;QD=26.23;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360280    GT:AD:DP:GQ:PL    0/1:7,7:14:99:406,0,194
9    80022415    rs2025846    A    T    1112.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360280    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1145,87,0
9    80031144    rs12343797    G    A    176.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360280    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
9    80040402    rs12342249    G    A    175.53    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.416;DB;DP=16;Dels=0.0;FS=3.256;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.062;QD=10.97;ReadPosRankSum=1.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360280    GT:AD:DP:GQ:PL    0/1:9,7:16:99:206,0,231
9    80040566    rs1801259    C    T    732.49    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.707;DB;DP=54;Dels=0.0;FS=3.964;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.914;QD=13.56;ReadPosRankSum=-0.009;SNPEFF_AMINO_ACID_CHANGE=S263;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_80040478_80040631;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341700    GT:AD:DP:GQ:PL    0/1:30,24:54:99:762,0,821
9    80044056    rs2296781    G    A    795.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341700    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:828,60,0
9    80851350    rs10867166    G    C    146.54    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.892;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.625;QD=10.47;ReadPosRankSum=-0.965;SNPEFF_AMINO_ACID_CHANGE=S28;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_80851148_80851519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277082    GT:AD:DP:GQ:PL    0/1:6,8:14:99:177,0,160
9    80851527    rs13292584    G    A    172.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.39;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277082    GT:AD:DP:GQ:PL    0/1:6,6:12:99:203,0,203
9    80856455    rs17787727    T    G    84.34    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.616;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=6.02;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277082    GT:AD:DP:GQ:PL    0/1:10,4:14:99:114,0,360
9    80856909    rs4877502    A    G    60.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=8.64;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277082    GT:AD:DP:GQ:PL    0/1:3,4:7:90.50:91,0,100
9    80863088    rs1929402    G    A    415.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277082    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:448,33,0
9    80866650    rs13298790    T    C    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536374    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,70
9    80868354    rs3824547    G    T    71.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.9;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536374    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,169
9    80877777    rs11137579    C    T    317.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.286;QD=21.17;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277082    GT:AD:DP:GQ:PL    0/1:5,10:15:99:348,0,159
9    80879005    rs144170205    A    T    841.68    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.769;QD=16.19;ReadPosRankSum=0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277082    GT:AD:DP:GQ:PL    0/1:25,27:52:99:872,0,887
9    80912115    rs2277148    G    C    150.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_80912059_80912186;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:183,15,0
9    80915403    rs10121107    A    T    266.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:299,24,0
9    80916615    rs7855063    G    A    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
9    80917096    rs3739473    C    T    132.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=22.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:165,15,0
9    80919756    rs3739474    T    G    2039.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.08;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=A99;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_80919651_80919856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2072,162,0
9    80921088    rs1537173    T    G    600.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9979;MQ=58.89;MQ0=0;QD=28.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:633,51,0
9    80921446    rs944513    G    T    3903.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=59.58;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3904,292,0
9    80921599    rs10116231    C    T    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    80923675    rs2039325    T    C    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
9    80932574    rs3780194    T    A    3454.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,124:124:99:3454,304,0
9    80932789    rs7028509    T    G    782.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:815,63,0
9    80932887    rs7043123    C    T    203.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347159    GT:AD:DP:GQ:PL    1/1:0,6:7:18.06:236,18,0
9    82187750    rs1934610    A    G    1024.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=P15;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_82187660_82187750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265284    GT:AD:DP:GQ:PL    1/1:0,30:31:81.25:1058,81,0
9    82189914    rs2791566    T    C    3852.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265284    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3852,307,0
9    82267305    rs7470165    T    C    118.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.73;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483597    GT:AD:DP:GQ:PL    0/1:2,4:6:54.72:148,0,55
9    82267732    rs2297499    C    G    1103.90    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.39;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.26;QD=14.72;ReadPosRankSum=0.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399288    GT:AD:DP:GQ:PL    0/1:38,37:75:99:1134,0,1309
9    82308390    rs11138336    G    A    156.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.872;QD=11.15;ReadPosRankSum=-0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265284    GT:AD:DP:GQ:PL    0/1:8,6:14:99:186,0,244
9    82308670    rs7025437    A    G    455.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3974;MQ=51.77;MQ0=0;QD=25.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265284    GT:AD:DP:GQ:PL    1/1:0,18:18:36.12:488,36,0
9    82320887    rs4877147    A    T    1176.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.5464;MQ=57.17;MQ0=0;QD=23.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265284    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1210,99,0
9    82335240    rs10217418    A    G    282.19    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.558;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=0.553;QD=16.6;ReadPosRankSum=1.558;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265284    GT:AD:DP:GQ:PL    0/1:6,11:17:99:312,0,202
9    84205860    rs8782    G    A    738.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.099;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.662;QD=12.52;ReadPosRankSum=-1.046;SNPEFF_AMINO_ACID_CHANGE=T563;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_84205720_84205967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376499    GT:AD:DP:GQ:PL    0/1:29,29:59:99:769,0,889
9    84207857    rs2796471    A    G    310.41    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-1.061;QD=22.17;ReadPosRankSum=-1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355002    GT:AD:DP:GQ:PL    0/1:4,10:14:99:340,0,128
9    84215034    rs2777781    A    T    953.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=29.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355002    GT:AD:DP:GQ:PL    1/1:0,32:32:75.24:987,75,0
9    84248203    rs113273526    CGTGTGTGTGTGT    C    1867.14    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.561;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=391.409;IndelType=D;MQ=36.92;MQ0=0;MQRankSum=-1.387;QD=54.92;ReadPosRankSum=-1.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376463    GT:AD:DP:GQ:PL    0/1:13,19:34:99:1906,0,117
9    84267021    rs60087604    T    TACAC    648.98    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=162.5551;IndelType=I;MQ=50.18;MQ0=0;MQRankSum=-0.744;QD=24.04;ReadPosRankSum=-0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355002    GT:AD:DP:GQ:PL    0/1:17,9:27:6.83:688,0,7
9    84267147    rs2228173    T    C    3960.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.681;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5929;MQ=58.87;MQ0=0;MQRankSum=-0.909;QD=32.2;ReadPosRankSum=-0.284;SNPEFF_AMINO_ACID_CHANGE=E118;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_84267099_84267203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355002    GT:AD:DP:GQ:PL    1/1:1,122:123:99:3961,259,0
9    84268878    rs2796447    A    G    638.22    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.292;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.235;QD=14.18;ReadPosRankSum=0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355002    GT:AD:DP:GQ:PL    0/1:23,22:45:99:668,0,767
9    84275014    rs2627002    C    A    2072.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.22;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355002    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2106,154,0
9    84275095    rs2796450    C    T    3391.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6336;MQ=57.81;MQ0=0;QD=36.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355002    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3391,253,0
9    84275256    rs36108203    C    CA    604.82    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=1.969;DB;DP=83;FS=6.114;HRun=13;HaplotypeScore=536.5441;IndelType=I;MQ=55.22;MQ0=0;MQRankSum=-0.177;QD=7.29;ReadPosRankSum=-4.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355002    GT:AD:DP:GQ:PL    0/1:52,27:83:99:644,0,290
9    84532697    rs145537028    T    G    1654.42    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.244;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=56.47;MQ0=0;MQRankSum=1.171;QD=12.93;ReadPosRankSum=-0.389;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM75D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376459    GT:AD:DP:GQ:PL    0/1:67,61:128:99:1684,0,2067
9    84533518    .    A    G    579.10    MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.616;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.29;MQ0=31;MQRankSum=0.844;QD=6.43;ReadPosRankSum=-0.601;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM75D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376459    GT:AD:DP:GQ:PL    0/1:52,38:90:99:609,0,395
9    85597720    rs67497591    CAGAG    C    588.04    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=41;FS=3.163;HRun=0;HaplotypeScore=240.7749;IndelType=D;MQ=58.37;MQ0=0;MQRankSum=1.026;QD=14.34;ReadPosRankSum=2.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:25,14:41:99:627,0,647
9    85597812    rs7853052    G    A    118.46    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=0.922;QD=16.92;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:2,5:7:66.35:148,0,66
9    85619329    rs66486106    AT    A    76.92    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=1.567;DB;DP=22;FS=0.0;HRun=4;HaplotypeScore=172.6847;IndelType=D;MQ=48.43;MQ0=0;MQRankSum=-2.429;QD=3.5;ReadPosRankSum=-2.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:17,5:22:99:116,0,512
9    85619351    rs141850659    ATTTAC    A    508.50    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=4.0;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=207.0337;IndelType=D;MQ=48.85;MQ0=0;MQRankSum=-4.062;QD=20.34;ReadPosRankSum=-0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:16,9:25:99:548,0,1153
9    85627408    rs4146960    G    A    322.10    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.144;DB;DP=24;Dels=0.0;FS=6.569;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=2.144;QD=13.42;ReadPosRankSum=3.476;SNPEFF_AMINO_ACID_CHANGE=R262C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_85627349_85627426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:13,11:24:99:352,0,409
9    85627540    rs10121395    A    C    67.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.45;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:4,4:8:97.57:98,0,139
9    85627554    rs4146961    C    T    36.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.24;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:2,3:5:66.17:66,0,73
9    85630621    rs1976455    C    T    535.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.083;DB;DP=54;Dels=0.0;FS=2.619;HRun=0;HaplotypeScore=0.9997;MQ=59.65;MQ0=0;MQRankSum=0.064;QD=9.91;ReadPosRankSum=2.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:36,18:54:99:565,0,1272
9    85640998    rs1546317    G    T    34.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.36;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376447    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:64,0,33
9    85862365    rs1056476    G    A    596.11    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=3.099;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=19.87;ReadPosRankSum=1.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465485    GT:AD:DP:GQ:PL    0/1:11,19:30:99:626,0,267
9    85863091    rs10114696    A    G    925.03    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.902;DB;DP=67;Dels=0.0;FS=8.246;HRun=0;HaplotypeScore=1.7337;MQ=59.66;MQ0=0;MQRankSum=0.358;QD=13.81;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=Y169;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_85862970_85863431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328788    GT:AD:DP:GQ:PL    0/1:32,35:67:99:955,0,1125
9    85905786    rs942281    G    A    201.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304195    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:235,18,0
9    85912709    rs141899020    A    G    1057.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.218;DB;DP=80;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6498;MQ=59.71;MQ0=0;MQRankSum=-0.236;QD=13.22;ReadPosRankSum=-0.303;SNPEFF_AMINO_ACID_CHANGE=S134P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_85912447_85912731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431299    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1088,0,1235
9    85928470    rs12375992    A    G    688.03    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.016;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=58.99;MQ0=0;MQRankSum=1.354;QD=14.96;ReadPosRankSum=-1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304195    GT:AD:DP:GQ:PL    0/1:21,25:46:99:718,0,738
9    85987879    rs67007240    GA    G    309.50    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.849;DB;DP=64;FS=1.386;HRun=12;HaplotypeScore=249.1328;IndelType=D;MQ=58.98;MQ0=0;MQRankSum=2.06;QD=4.84;ReadPosRankSum=-0.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304195    GT:AD:DP:GQ:PL    0/1:38,22:64:99:349,0,900
9    85987935    rs3739657    T    C    395.13    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.203;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.131;QD=11.97;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304195    GT:AD:DP:GQ:PL    0/1:19,14:33:99:425,0,557
9    86004415    rs72745024    C    A    208.44    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=16.03;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304195    GT:AD:DP:GQ:PL    0/1:6,7:13:99:238,0,204
9    86004436    rs3739655    T    C    370.43    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.227;QD=23.15;ReadPosRankSum=-0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304195    GT:AD:DP:GQ:PL    0/1:5,11:16:99:400,0,158
9    86243933    rs2811905    G    T    2687.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.69;MQ0=0;QD=36.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277124    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2720,205,0
9    86244075    rs4146740    C    A    105.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=17.66;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277124    GT:AD:DP:GQ:PL    0/1:2,4:6:59.83:136,0,60
9    86256381    rs66822704    CATGAT    C    669.78    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DB;DP=25;FS=3.203;HRun=0;HaplotypeScore=166.5194;IndelType=D;MQ=49.96;MQ0=0;MQRankSum=-3.477;QD=26.79;ReadPosRankSum=0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277124    GT:AD:DP:GQ:PL    0/1:14,11:25:99:709,0,978
9    86256431    rs2811917    T    A    657.18    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.777;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.89;MQ0=0;MQRankSum=-1.415;QD=13.98;ReadPosRankSum=-0.904;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C9orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277124    GT:AD:DP:GQ:PL    0/1:24,23:47:99:687,0,706
9    86278773    rs9314722    T    C    951.10    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=61;Dels=0.0;FS=5.675;HRun=0;HaplotypeScore=0.9894;MQ=59.62;MQ0=0;MQRankSum=0.225;QD=15.59;ReadPosRankSum=0.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    0/1:27,34:61:99:981,0,867
9    86278817    rs7866234    C    A    878.23    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.996;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.37;MQ0=0;MQRankSum=-0.639;QD=12.03;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=L502;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_86278790_86278958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    0/1:37,35:72:99:908,0,1120
9    86279015    rs2781003    C    T    1486.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1519,111,0
9    86279025    rs2781002    T    C    738.87    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.035;DB;DP=39;Dels=0.0;FS=2.673;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.073;QD=18.95;ReadPosRankSum=-0.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    0/1:14,25:39:99:769,0,477
9    86279814    rs10868037    G    A    387.52    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.894;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.57;MQ0=0;MQRankSum=-2.137;QD=16.15;ReadPosRankSum=-1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    0/1:10,14:24:99:418,0,258
9    86281195    rs12344615    A    G    306.36    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.61;QD=11.35;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    0/1:15,12:27:99:336,0,508
9    86284178    rs1044175    C    A    987.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.22;SNPEFF_AMINO_ACID_CHANGE=L390;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_86284100_86284242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    1/1:0,35:35:75.24:1021,75,0
9    86293655    rs10481737    G    A    359.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.03;MQ0=0;MQRankSum=1.241;QD=14.97;ReadPosRankSum=0.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    0/1:12,12:24:99:389,0,413
9    86293795    rs10481738    G    A    38.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:68,0,34
9    86294533    rs2542776    C    T    259.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
9    86297739    rs57150962    G    GT    134.81    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DB;DP=26;FS=0.0;HRun=12;HaplotypeScore=94.3008;IndelType=I;MQ=59.95;MQ0=0;MQRankSum=1.217;QD=5.19;ReadPosRankSum=-1.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    0/1:16,8:26:99:174,0,260
9    86298204    rs2042042    A    G    173.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257468    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
9    86354511    rs4750    G    C    146.23    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.221;QD=18.28;ReadPosRankSum=0.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376362    GT:AD:DP:GQ:PL    0/1:3,5:8:99:176,0,101
9    86368105    rs10868053    A    G    371.83    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.701;QD=10.94;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376365    GT:AD:DP:GQ:PL    0/1:21,13:34:99:402,0,757
9    86383577    rs4576496    T    C    140.68    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388782    GT:AD:DP:GQ:PL    0/1:1,5:6:23.17:171,0,23
9    86395380    rs72155123    T    TA    124.72    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=34;FS=0.0;HRun=17;HaplotypeScore=232.0162;IndelType=I;MQ=52.95;MQ0=0;MQRankSum=0.233;QD=3.67;ReadPosRankSum=0.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491634    GT:AD:DP:GQ:PL    0/1:18,11:34:99:164,0,142
9    86399815    rs7021357    C    T    604.84    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.346;DB;DP=39;Dels=0.0;FS=9.746;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.576;QD=15.51;ReadPosRankSum=0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376365    GT:AD:DP:GQ:PL    0/1:19,20:39:99:635,0,617
9    86457387    rs113635305    G    GT    110.07    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=13;FS=0.0;HRun=8;HaplotypeScore=26.1986;IndelType=I;MQ=34.28;MQ0=0;MQRankSum=0.684;QD=8.47;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297814    GT:AD:DP:GQ:PL    0/1:8,5:13:58.23:149,0,58
9    86468715    rs295274    A    T    429.11    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=37;Dels=0.0;FS=1.407;HRun=0;HaplotypeScore=0.0;MQ=51.6;MQ0=1;MQRankSum=1.172;QD=11.6;ReadPosRankSum=-0.095;SNPEFF_AMINO_ACID_CHANGE=I1062;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_86468544_86468750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297814    GT:AD:DP:GQ:PL    0/1:19,18:37:99:459,0,583
9    86504005    rs13289566    C    T    689.35    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.24;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.93;MQ0=0;MQRankSum=-1.881;QD=10.29;ReadPosRankSum=1.854;SNPEFF_AMINO_ACID_CHANGE=G49E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_86503999_86504185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376347    GT:AD:DP:GQ:PL    0/1:36,31:67:99:719,0,1156
9    86568874    rs7045126    A    G    37.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314700    GT:AD:DP:GQ:PL    0/1:2,3:5:64.33:68,0,64
9    86592026    rs296886    A    G    440.25    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.093;DB;DP=25;Dels=0.0;FS=3.074;HRun=0;HaplotypeScore=1.9328;MQ=60.0;MQ0=0;MQRankSum=-0.192;QD=17.61;ReadPosRankSum=-0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351839    GT:AD:DP:GQ:PL    0/1:11,14:25:99:470,0,322
9    86593314    rs167203    G    C    56.14    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.386;QD=5.61;ReadPosRankSum=0.895;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_86593288_86593367;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351839    GT:AD:DP:GQ:PL    0/1:7,3:10:86.13:86,0,254
9    86615745    rs6559754    C    G    87.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=9.77;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325875    GT:AD:DP:GQ:PL    0/1:5,4:9:99:118,0,177
9    86617265    rs1982151    A    G    930.97    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=0.18;DB;DP=56;Dels=0.0;FS=3.885;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=16.62;ReadPosRankSum=0.869;SNPEFF_AMINO_ACID_CHANGE=N455S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_86615866_86618985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325875    GT:AD:DP:GQ:PL    0/1:27,29:56:99:961,0,959
9    86917382    rs4877837    G    A    110.56    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.79;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495823    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,104
9    86920117    rs35729465    GA    G    34.44    QDFilter2    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.292;DB;DP=31;FS=3.245;HRun=17;HaplotypeScore=195.9533;IndelType=D;MQ=53.3;MQ0=0;MQRankSum=0.912;QD=1.11;ReadPosRankSum=-0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495823    GT:AD:DP:GQ:PL    0/1:17,10:31:73.47:73,0,174
9    86920236    rs7867504    T    C    744.46    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.993;DB;DP=63;Dels=0.0;FS=0.993;HRun=1;HaplotypeScore=0.8321;MQ=56.62;MQ0=0;MQRankSum=1.025;QD=11.82;ReadPosRankSum=1.727;SNPEFF_AMINO_ACID_CHANGE=T20;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_86920169_86920260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537648    GT:AD:DP:GQ:PL    0/1:33,30:63:99:774,0,978
9    86924484    .    C    A    49.85    QDFilter2    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.394;DP=32;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=7.9622;MQ=48.92;MQ0=0;MQRankSum=-3.985;QD=1.56;ReadPosRankSum=2.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376238    GT:AD:DP:GQ:PL    0/1:20,12:32:79.84:80,0,638
9    86928133    rs11140510    C    T    114.93    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.99;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376238    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:145,0,28
9    86928497    rs7863627    C    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376238    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
9    86955682    rs7035753    C    T    455.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376238    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:489,39,0
9    87285595    rs1187325    C    G    94.47    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.394;QD=5.25;ReadPosRankSum=0.099;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_87285292_87285875;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376213    GT:AD:DP:GQ:PL    0/1:13,5:18:99:124,0,403
9    87285915    rs1187326    C    T    298.17    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=24.85;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277120    GT:AD:DP:GQ:PL    0/1:1,11:12:6.92:328,0,7
9    87285992    rs1211166    G    A    129.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277120    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
9    87338267    rs1187362    T    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277120    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    87360106    rs10528938    ACACCT    A    620.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=76.8754;IndelType=D;MQ=42.41;MQ0=0;QD=62.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277120    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:663,30,0
9    87360153    rs7048278    G    A    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277120    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
9    87563252    rs1078947    T    C    125.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277120    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
9    88207871    rs17350043    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337006    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    88269947    rs675837    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376080    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
9    88275838    rs606606    T    A    413.20    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.331;DB;DP=37;Dels=0.0;FS=1.363;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.046;QD=11.17;ReadPosRankSum=-1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337006    GT:AD:DP:GQ:PL    0/1:17,20:37:99:443,0,559
9    88287647    rs35158140    AT    A    32.06    QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=37;FS=0.0;HRun=20;HaplotypeScore=255.2118;IndelType=D;MQ=49.81;MQ0=0;MQRankSum=0.439;QD=0.87;ReadPosRankSum=2.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337006    GT:AD:DP:GQ:PL    0/1:25,7:37:71.09:71,0,77
9    88292506    rs78796290    TA    T    156.43    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.68;DB;DP=32;FS=0.0;HRun=14;HaplotypeScore=133.7203;IndelType=D;MQ=57.8;MQ0=0;MQRankSum=-0.348;QD=4.89;ReadPosRankSum=0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGTPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337006    GT:AD:DP:GQ:PL    0/1:20,12:32:99:195,0,230
9    88371048    .    C    T    471.89    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.078;DP=38;Dels=0.0;FS=5.412;HRun=0;HaplotypeScore=0.0;MQ=47.46;MQ0=0;MQRankSum=1.535;QD=12.42;ReadPosRankSum=-1.096;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-202I11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447148    GT:AD:DP:GQ:PL    0/1:18,20:38:99:502,0,531
9    88455237    rs6559883    A    G    118.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=47.35;MQ0=0;MQRankSum=-0.676;QD=11.81;ReadPosRankSum=0.103;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-213G2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431724    GT:AD:DP:GQ:PL    0/1:5,5:10:99:148,0,163
9    88461114    rs6559885    A    G    83.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-213G2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431724    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:113,0,29
9    88464394    .    A    G    78.55    QDFilter2    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.858;DP=100;Dels=0.0;FS=11.88;HRun=0;HaplotypeScore=4.4396;MQ=41.5;MQ0=16;MQRankSum=-5.118;QD=0.79;ReadPosRankSum=-1.959;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-213G2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431724    GT:AD:DP:GQ:PL    0/1:69,31:100:99:109,0,2162
9    88618462    rs1328923    C    G    967.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361671    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:1000,72,0
9    88650029    rs7046093    T    C    2166.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.143;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8938;MQ=59.67;MQ0=0;MQRankSum=-0.091;QD=31.39;ReadPosRankSum=0.236;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257504    GT:AD:DP:GQ:PL    1/1:2,67:69:99:2199,133,0
9    88667582    rs10780743    T    G    1874.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388711    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1908,141,0
9    88842230    .    T    TTTTA    315.41    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DP=11;FS=0.0;HRun=0;HaplotypeScore=43.5262;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=-1.133;QD=28.67;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339137    GT:AD:DP:GQ:PL    0/1:6,4:11:99:354,0,161
9    88886830    rs12351992    C    T    205.99    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=55.54;MQ0=0;MQRankSum=-0.66;QD=15.85;ReadPosRankSum=1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311534    GT:AD:DP:GQ:PL    0/1:6,7:13:99:236,0,211
9    88919648    rs4877315    A    T    199.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277141    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
9    88924057    rs4520250    A    C    478.40    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=16.5;ReadPosRankSum=1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277141    GT:AD:DP:GQ:PL    0/1:12,16:29:99:508,0,422
9    88925774    rs11792804    A    G    198.52    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9472;MQ=58.75;MQ0=0;MQRankSum=1.215;QD=13.23;ReadPosRankSum=-1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277141    GT:AD:DP:GQ:PL    0/1:8,7:15:99:229,0,284
9    88934624    rs700760    G    T    68.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469004    GT:AD:DP:GQ:PL    0/1:3,3:6:98.48:98,0,108
9    88937617    rs700768    T    A    34.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469004    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
9    88937851    rs34431437    ATTT    A    1263.85    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=6.069;DB;DP=71;FS=3.417;HRun=7;HaplotypeScore=283.4252;IndelType=D;MQ=59.47;MQ0=0;MQRankSum=0.269;QD=17.8;ReadPosRankSum=1.24;SNPEFF_AMINO_ACID_CHANGE=KN226N;SNPEFF_CODON_CHANGE=aaaaat/aat;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_9_88937788_88938875;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277141    GT:AD:DP:GQ:PL    0/1:38,33:71:99:1303,0,1867
9    88943171    rs791314    T    C    701.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.721;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5946;MQ=59.34;MQ0=0;MQRankSum=0.177;QD=20.06;ReadPosRankSum=-0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277141    GT:AD:DP:GQ:PL    0/1:14,21:35:99:732,0,401
9    88953554    rs791321    C    T    82.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277141    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:113,0,29
9    88955789    rs700773    T    C    147.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=16.35;ReadPosRankSum=-1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375947    GT:AD:DP:GQ:PL    0/1:3,6:9:99:177,0,103
9    88956017    rs41283665    C    T    678.69    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=45;Dels=0.0;FS=1.503;HRun=2;HaplotypeScore=1.9867;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=15.08;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375947    GT:AD:DP:GQ:PL    0/1:22,23:45:99:709,0,587
9    88959938    rs791323    C    T    852.55    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=55;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.9998;MQ=59.58;MQ0=0;MQRankSum=1.391;QD=15.5;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=L150;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_88959785_88960069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375947    GT:AD:DP:GQ:PL    0/1:26,29:55:99:883,0,783
9    89763574    rs461126    A    C    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_89763559_89763813;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375941    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    89763851    rs458983    C    G    448.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf170;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375941    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:481,39,0
9    90114082    rs12552278    C    T    324.78    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=24;Dels=0.0;FS=1.804;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.101;QD=13.53;ReadPosRankSum=1.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358077    GT:AD:DP:GQ:PL    0/1:11,13:24:99:355,0,313
9    90296193    rs72033969    C    CAAAAAAAA    1093.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=6;HaplotypeScore=108.5384;IndelType=I;MQ=38.96;MQ0=0;QD=91.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358077    GT:AD:DP:GQ:PL    1/1:6,4:12:36.12:1136,36,0
9    90313436    rs36218779    C    A    249.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.234;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.178;QD=11.88;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358077    GT:AD:DP:GQ:PL    0/1:12,9:21:99:279,0,401
9    90320908    rs2378755    C    T    124.93    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.61;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358077    GT:AD:DP:GQ:PL    0/1:8,5:13:99:155,0,281
9    90320954    rs1927973    G    A    436.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.23;MQ0=0;MQRankSum=-0.954;QD=14.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358077    GT:AD:DP:GQ:PL    0/1:15,15:30:99:466,0,508
9    90321017    rs36220123    T    A    392.37    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=66;Dels=0.0;FS=6.281;HRun=2;HaplotypeScore=1.5661;MQ=58.95;MQ0=0;MQRankSum=-0.29;QD=5.94;ReadPosRankSum=0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358077    GT:AD:DP:GQ:PL    0/1:42,24:66:99:422,0,1168
9    90321115    rs36220444    C    T    762.80    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.484;DB;DP=71;Dels=0.0;FS=3.602;HRun=0;HaplotypeScore=2.4084;MQ=59.02;MQ0=0;MQRankSum=-1.107;QD=10.74;ReadPosRankSum=0.11;SNPEFF_AMINO_ACID_CHANGE=N1043;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_90321047_90323546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358077    GT:AD:DP:GQ:PL    0/1:40,31:71:99:793,0,1009
9    90321862    rs36220448    A    G    377.13    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.636;DB;DP=38;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.8667;MQ=59.39;MQ0=0;MQRankSum=1.082;QD=9.92;ReadPosRankSum=0.899;SNPEFF_AMINO_ACID_CHANGE=S1226;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_90321047_90322297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000491893    GT:AD:DP:GQ:PL    0/1:21,17:38:99:407,0,629
9    90345046    rs116954674    G    A    111.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.72;QD=18.54;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342020    GT:AD:DP:GQ:PL    0/1:2,4:6:63.18:141,0,63
9    90359962    rs12002901    T    C    30.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-65B23.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425861    GT:AD:DP:GQ:PL    0/1:2,2:4:60.11:60,0,70
9    90387805    rs9410955    A    C    943.55    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DB;DP=76;Dels=0.0;FS=6.888;HRun=0;HaplotypeScore=0.9999;MQ=59.7;MQ0=0;MQRankSum=0.595;QD=12.42;ReadPosRankSum=0.241;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412179    GT:AD:DP:GQ:PL    0/1:43,32:76:99:974,0,1402
9    90387983    rs12342543    T    C    553.66    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.242;DB;DP=56;Dels=0.0;FS=5.552;HRun=1;HaplotypeScore=0.9665;MQ=59.59;MQ0=0;MQRankSum=1.022;QD=9.89;ReadPosRankSum=-0.775;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354530    GT:AD:DP:GQ:PL    0/1:31,25:56:99:584,0,1115
9    90388270    rs7853247    A    T    212.08    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.772;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=14.14;ReadPosRankSum=-0.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354530    GT:AD:DP:GQ:PL    0/1:7,8:15:99:242,0,234
9    90388501    rs11141967    A    G    472.01    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.304;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=10.73;ReadPosRankSum=0.012;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354530    GT:AD:DP:GQ:PL    0/1:27,17:44:99:502,0,812
9    90388539    rs10735592    T    A    353.45    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.149;DB;DP=38;Dels=0.0;FS=3.255;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.209;QD=9.3;ReadPosRankSum=-0.687;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354530    GT:AD:DP:GQ:PL    0/1:23,15:38:99:383,0,787
9    90396135    rs9410963    G    A    520.30    PASS    AB=0.217;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=22.62;ReadPosRankSum=-0.112;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354530    GT:AD:DP:GQ:PL    0/1:5,18:23:99:550,0,150
9    90472870    rs7469946    G    A    82.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.84;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:3,4:7:99:113,0,100
9    90472942    rs7467380    T    C    474.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.711;QD=19.79;ReadPosRankSum=-0.032;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:8,16:24:99:505,0,256
9    90472952    rs7469954    G    A    528.60    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.606;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.607;QD=20.33;ReadPosRankSum=0.501;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:10,16:26:99:559,0,329
9    90473429    rs75338572    T    TG    1032.39    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=70;FS=2.15;HRun=3;HaplotypeScore=218.3044;IndelType=I;MQ=59.31;MQ0=0;MQRankSum=1.177;QD=14.75;ReadPosRankSum=0.076;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:40,30:70:99:1071,0,995
9    90473490    rs56723878    T    C    1069.95    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DB;DP=82;Dels=0.0;FS=1.894;HRun=0;HaplotypeScore=2.7772;MQ=57.65;MQ0=0;MQRankSum=1.658;QD=13.05;ReadPosRankSum=0.562;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:42,40:82:99:1100,0,1200
9    90473602    rs7873960    G    A    3668.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.412;DB;DP=123;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.734;MQ=58.1;MQ0=0;MQRankSum=-0.131;QD=29.83;ReadPosRankSum=0.073;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    1/1:1,122:123:99:3669,249,0
9    90473632    rs7873972    G    A    1781.10    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.672;DB;DP=125;Dels=0.0;FS=2.378;HRun=0;HaplotypeScore=0.734;MQ=57.03;MQ0=1;MQRankSum=1.911;QD=14.25;ReadPosRankSum=-1.249;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:59,66:125:99:1811,0,1743
9    90473762    rs7873884    A    G    5202.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.1981;MQ=55.62;MQ0=0;QD=31.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    1/1:0,164:165:99:5202,415,0
9    90473899    rs34537969    AG    A    796.15    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=7.213;DB;DP=91;FS=1.036;HRun=7;HaplotypeScore=536.2792;IndelType=D;MQ=56.37;MQ0=1;MQRankSum=-1.678;QD=8.38;ReadPosRankSum=0.472;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:55,40:91:99:835,0,1377
9    90473914    rs7874019    A    C    934.85    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.976;DB;DP=79;Dels=0.0;FS=1.088;HRun=1;HaplotypeScore=0.0;MQ=56.49;MQ0=1;MQRankSum=-0.567;QD=11.83;ReadPosRankSum=0.587;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:41,38:79:99:965,0,1333
9    90473973    rs7874197    C    G    651.87    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.302;DB;DP=43;Dels=0.0;FS=1.949;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;MQRankSum=-0.118;QD=15.16;ReadPosRankSum=-0.355;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:19,24:43:99:682,0,570
9    90474021    rs13292077    C    T    418.13    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.93;MQ0=0;MQRankSum=0.116;QD=17.42;ReadPosRankSum=-0.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:11,13:24:99:448,0,241
9    90474097    rs9695836    A    G    189.33    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-3.225;QD=9.47;ReadPosRankSum=0.204;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:11,9:20:99:219,0,275
9    90474105    rs113947581    GGGAAGGCCTCAC    G    809.98    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=227.2386;IndelType=D;MQ=45.47;MQ0=0;MQRankSum=-2.888;QD=45.0;ReadPosRankSum=1.821;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:10,8:18:99:849,0,1513
9    90474214    rs9697000    G    A    337.47    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DB;DP=19;Dels=0.0;FS=5.035;HRun=0;HaplotypeScore=0.0;MQ=49.38;MQ0=0;MQRankSum=0.69;QD=17.76;ReadPosRankSum=1.183;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:5,14:19:99:367,0,130
9    90474276    rs9696995    C    T    207.01    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.898;QD=20.7;ReadPosRankSum=1.733;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=XXyac-YM21GA2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399186    GT:AD:DP:GQ:PL    0/1:2,8:10:39.79:237,0,40
9    90474340    rs9697005    G    A    81.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=20.34;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=XXyac-YM21GA2.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447524    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:113,9,0
9    90474349    rs9695306    T    C    71.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.92;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=XXyac-YM21GA2.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447524    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:104,9,0
9    90474477    rs9697107    C    T    107.37    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=17.89;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=XXyac-YM21GA2.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447524    GT:AD:DP:GQ:PL    0/1:1,5:6:27.96:137,0,28
9    90474517    rs6560036    C    T    130.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=56.04;MQ0=0;QD=21.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=XXyac-YM21GA2.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447524    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:163,12,0
9    90474521    rs7874833    C    T    81.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.8941;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=13.66;ReadPosRankSum=0.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=XXyac-YM21GA2.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447524    GT:AD:DP:GQ:PL    0/1:2,4:6:32.73:112,0,33
9    90500405    rs7850542    A    C    388.13    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=1.311;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.252;QD=15.53;ReadPosRankSum=-0.786;SNPEFF_AMINO_ACID_CHANGE=T335P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_90499828_90503814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf79;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325643    GT:AD:DP:GQ:PL    0/1:8,17:25:99:418,0,259
9    90559129    rs7027067    G    A    408.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-350E12.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427728    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:442,33,0
9    90581746    rs1167    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDK20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286878    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    90586043    rs622418    G    A    190.41    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=23;Dels=0.0;FS=4.2;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.85;QD=8.28;ReadPosRankSum=-0.661;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDK20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286878    GT:AD:DP:GQ:PL    0/1:14,9:23:99:220,0,416
9    90586221    rs9410653    G    A    256.89    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.333;QD=18.35;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=H73;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_90586062_90586250;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDK20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286878    GT:AD:DP:GQ:PL    0/1:5,9:14:99:287,0,127
9    90588814    rs570184    C    G    3764.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.43;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDK20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286878    GT:AD:DP:GQ:PL    1/1:0,130:130:99:3765,298,0
9    90588903    rs665983    C    T    968.11    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.154;DB;DP=96;Dels=0.0;FS=0.817;HRun=1;HaplotypeScore=1.9315;MQ=58.99;MQ0=0;MQRankSum=-0.586;QD=10.08;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=E41;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_90588837_90588950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDK20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286878    GT:AD:DP:GQ:PL    0/1:53,43:96:99:998,0,1669
9    90589016    rs666459    A    G    820.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDK20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286878    GT:AD:DP:GQ:PL    1/1:0,29:29:66.21:853,66,0
9    91150763    rs62580716    C    A    37.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375854    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
9    91606203    rs4877039    C    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334490    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    91606812    rs34421923    G    A    317.03    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.756;QD=10.93;ReadPosRankSum=-0.708;SNPEFF_AMINO_ACID_CHANGE=S154N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_91606767_91611055;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375851    GT:AD:DP:GQ:PL    0/1:16,13:29:99:347,0,524
9    91628546    rs944483    A    C    1186.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.76;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375835    GT:AD:DP:GQ:PL    1/1:0,34:34:96.28:1219,96,0
9    91652414    rs2282125    A    T    1217.40    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.075;DB;DP=104;Dels=0.0;FS=1.688;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.63;QD=11.71;ReadPosRankSum=0.651;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375830    GT:AD:DP:GQ:PL    0/1:60,44:104:99:1247,0,1764
9    91653287    rs944481    G    C    122.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.248;QD=13.65;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375830    GT:AD:DP:GQ:PL    0/1:3,6:9:67.59:153,0,68
9    91656963    rs3750399    T    C    637.51    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=51;Dels=0.0;FS=2.488;HRun=0;HaplotypeScore=0.5784;MQ=59.55;MQ0=0;MQRankSum=0.708;QD=12.5;ReadPosRankSum=-0.198;SNPEFF_AMINO_ACID_CHANGE=P446;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_91656941_91657099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375835    GT:AD:DP:GQ:PL    0/1:24,27:51:99:668,0,715
9    91666812    rs7021743    C    A    411.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375830    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:444,33,0
9    91667136    rs7025214    C    T    588.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375830    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:621,48,0
9    91680531    rs3818668    C    G    2817.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375830    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2851,214,0
9    91680600    rs9410455    A    G    1277.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375830    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1310,99,0
9    91931433    rs14867    T    C    170.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.51;MQ0=0;QD=28.34;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECISBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339901    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:203,18,0
9    91934787    rs3763616    A    G    646.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314355    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:679,51,0
9    91953252    rs7851988    T    C    378.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECISBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339901    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:411,30,0
9    91953672    rs80298072    T    C    76.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECISBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440898    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
9    91978159    rs4876979    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECISBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339901    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    91978397    rs13295305    C    T    1174.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.33;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=R713K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_91978345_91978442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339861    GT:AD:DP:GQ:PL    1/1:0,37:37:96.30:1208,96,0
9    91978539    rs13297725    A    T    547.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECISBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339901    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:581,45,0
9    91978783    rs45515192    G    A    1694.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.247;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.525;QD=33.9;ReadPosRankSum=1.663;SNPEFF_AMINO_ACID_CHANGE=P40;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_91978656_91979566;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420101    GT:AD:DP:GQ:PL    1/1:1,49:50:96.12:1728,96,0
9    91978990    rs45615438    C    T    528.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_91978656_91979566;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420101    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:562,42,0
9    92003749    rs7465881    A    G    1081.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.796;DB;DP=37;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.89;QD=29.22;ReadPosRankSum=-0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420681    GT:AD:DP:GQ:PL    1/1:1,36:37:54.53:1114,55,0
9    92007209    rs35124001    T    TC    425.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=5;HaplotypeScore=33.7131;IndelType=I;MQ=60.77;MQ0=0;QD=30.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420681    GT:AD:DP:GQ:PL    1/1:2,12:14:36.12:467,36,0
9    92011763    rs13283585    G    A    226.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339861    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:260,21,0
9    92018075    rs34910857    G    T    70.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.51;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420670    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:100,0,31
9    92020159    rs13287862    T    C    275.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420670    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
9    92020433    rs7856677    G    A    522.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464051    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:556,42,0
9    93505417    rs1148850    T    C    4200.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=49.1;MQ0=1;QD=29.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-61N16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445529    GT:AD:DP:GQ:PL    1/1:0,140:141:99:4201,334,0
9    93513767    rs72546526    C    CT    856.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.576;DB;DP=25;FS=3.854;HRun=1;HaplotypeScore=61.9473;IndelType=I;MQ=21.91;MQ0=3;MQRankSum=-1.576;QD=15.85;ReadPosRankSum=-1.103;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:4,50:25:27.24:898,27,0
9    93627484    rs4744516    C    T    94.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.626;QD=6.74;ReadPosRankSum=1.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375746    GT:AD:DP:GQ:PL    0/1:10,4:14:99:124,0,310
9    93629347    rs1760124    G    A    798.13    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=4.143;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8786;MQ=59.58;MQ0=0;MQRankSum=0.704;QD=14.51;ReadPosRankSum=-0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375746    GT:AD:DP:GQ:PL    0/1:27,28:55:99:828,0,704
9    93629630    rs7020271    T    C    41.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=5.94;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375746    GT:AD:DP:GQ:PL    0/1:4,3:7:71.59:72,0,134
9    93637015    rs2290890    C    T    2843.42    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=4.761;DB;DP=196;Dels=0.0;FS=7.33;HRun=0;HaplotypeScore=4.5383;MQ=59.53;MQ0=0;MQRankSum=-0.327;QD=14.51;ReadPosRankSum=-0.078;SNPEFF_AMINO_ACID_CHANGE=P332;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_93636954_93637131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375747    GT:AD:DP:GQ:PL    0/1:82,113:196:99:2873,0,2251
9    93639803    rs1760132    A    G    425.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375746    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:458,36,0
9    93639973    rs2290888    G    C    637.74    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.62;MQ0=0;MQRankSum=-1.37;QD=13.02;ReadPosRankSum=0.23;SNPEFF_AMINO_ACID_CHANGE=R411;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_93639853_93640062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375747    GT:AD:DP:GQ:PL    0/1:25,24:49:99:668,0,841
9    93640009    rs2290887    G    A    710.47    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=50;Dels=0.0;FS=4.041;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.401;QD=14.21;ReadPosRankSum=-1.304;SNPEFF_AMINO_ACID_CHANGE=L423;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_93639853_93640062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375747    GT:AD:DP:GQ:PL    0/1:23,27:50:99:740,0,719
9    93640120    rs2290886    C    T    128.47    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=10.71;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375746    GT:AD:DP:GQ:PL    0/1:7,5:12:99:158,0,245
9    93640131    rs2290885    C    T    102.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.28;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375746    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,186
9    93641175    rs2306041    C    T    871.54    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=1.875;DB;DP=47;Dels=0.0;FS=2.499;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.379;QD=18.54;ReadPosRankSum=-0.488;SNPEFF_AMINO_ACID_CHANGE=Y484;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_93641046_93641235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375747    GT:AD:DP:GQ:PL    0/1:19,28:47:99:902,0,577
9    93641282    rs2306039    G    A    434.13    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.596;DB;DP=25;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.729;QD=17.37;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375746    GT:AD:DP:GQ:PL    0/1:9,16:25:99:464,0,251
9    93657761    rs158689    A    T    1039.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375746    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1072,87,0
9    93976601    .    C    T    178.67    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=9.4;ReadPosRankSum=0.454;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473695    GT:AD:DP:GQ:PL    0/1:11,8:19:99:209,0,338
9    93982932    rs773515    C    T    201.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AUH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303617    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
9    94456643    rs923771    G    C    798.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.03;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375715    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:832,60,0
9    94456705    rs923770    T    A    1505.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375715    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1538,132,0
9    94456714    rs923769    C    T    1826.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375715    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1859,144,0
9    94485928    rs2230578    C    T    460.95    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=43;Dels=0.0;FS=17.624;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=10.72;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375715    GT:AD:DP:GQ:PL    0/1:24,19:43:99:491,0,647
9    94486321    rs10761129    C    T    283.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.503;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=55.56;MQ0=0;MQRankSum=-0.148;QD=6.6;ReadPosRankSum=-0.614;SNPEFF_AMINO_ACID_CHANGE=V819I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_94484879_94487389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375708    GT:AD:DP:GQ:PL    0/1:28,14:43:99:314,0,490
9    94487066    rs41277837    C    T    366.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DB;DP=16;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=22.89;ReadPosRankSum=0.061;SNPEFF_AMINO_ACID_CHANGE=P430;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_94486436_94487389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375715    GT:AD:DP:GQ:PL    0/1:4,12:16:99:396,0,102
9    94493470    rs10992070    G    A    534.54    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=51;Dels=0.0;FS=2.659;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.9;QD=10.48;ReadPosRankSum=-1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375708    GT:AD:DP:GQ:PL    0/1:27,24:51:99:565,0,715
9    94499519    rs10992073    C    A    257.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=21.46;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375708    GT:AD:DP:GQ:PL    0/1:4,8:12:99:287,0,132
9    94499964    rs9409459    T    C    70.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375708    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:103,9,0
9    94817882    rs34684548    AT    A    419.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=27.3552;IndelType=D;MQ=60.98;MQ0=0;QD=38.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482632    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:462,33,0
9    94939380    rs78398569    G    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-62C3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
9    94939981    rs9299400    G    A    760.11    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.837;DB;DP=56;Dels=0.0;FS=1.209;HRun=1;HaplotypeScore=0.9789;MQ=59.17;MQ0=0;MQRankSum=0.086;QD=13.57;ReadPosRankSum=-1.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-62C3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414425    GT:AD:DP:GQ:PL    0/1:29,27:56:99:790,0,936
9    94951235    rs11790258    C    T    249.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
9    94973193    rs35288957    GA    G    268.55    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=4.0;DB;DP=23;FS=0.0;HRun=8;HaplotypeScore=54.4851;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.651;QD=11.68;ReadPosRankSum=0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375629    GT:AD:DP:GQ:PL    0/1:10,13:23:99:308,0,293
9    95016215    rs10820960    C    T    151.50    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.94;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472894    GT:AD:DP:GQ:PL    0/1:3,5:8:99:181,0,103
9    95018903    rs9299403    A    G    591.73    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=54;Dels=0.0;FS=1.45;HRun=3;HaplotypeScore=1.8154;MQ=59.57;MQ0=0;MQRankSum=0.064;QD=10.96;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375629    GT:AD:DP:GQ:PL    0/1:24,30:54:99:622,0,817
9    95042917    rs3736835    G    C    135.37    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=10.41;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375629    GT:AD:DP:GQ:PL    0/1:8,5:13:99:165,0,283
9    95068046    rs1133908    C    T    787.74    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=59;Dels=0.0;FS=5.341;HRun=2;HaplotypeScore=2.5575;MQ=59.61;MQ0=0;MQRankSum=-0.622;QD=13.35;ReadPosRankSum=-0.995;SNPEFF_AMINO_ACID_CHANGE=K896;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_95068035_95068112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358855    GT:AD:DP:GQ:PL    0/1:29,30:59:99:818,0,834
9    95147840    rs1053441    T    A    338.11    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.039;DB;DP=20;Dels=0.0;FS=3.056;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=16.91;ReadPosRankSum=1.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447356    GT:AD:DP:GQ:PL    0/1:8,12:20:99:368,0,277
9    95155563    rs2274966    C    A    332.32    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=2.661;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.774;QD=18.46;ReadPosRankSum=-0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375587    GT:AD:DP:GQ:PL    0/1:5,13:18:99:362,0,138
9    95219492    .    T    C    229.55    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.682;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=15.3;ReadPosRankSum=-0.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375587    GT:AD:DP:GQ:PL    0/1:7,8:15:99:260,0,243
9    95219597    rs4744132    G    A    1338.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_AMINO_ACID_CHANGE=S372;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_95218487_95219767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375544    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1371,105,0
9    95237024    rs111419727    CTCA    C    410.66    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.803;DB;DP=46;FS=10.591;HRun=0;HaplotypeScore=260.3391;IndelType=D;MQ=52.12;MQ0=0;MQRankSum=4.025;QD=8.93;ReadPosRankSum=0.71;SNPEFF_AMINO_ACID_CHANGE=DE23E;SNPEFF_CODON_CHANGE=gatgag/gag;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_9_95236906_95237209;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450139    GT:AD:DP:GQ:PL    0/1:23,15:46:99:450,0,817
9    95237222    rs3739606    G    T    496.35    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6671;MQ=58.45;MQ0=0;MQRankSum=1.333;QD=11.03;ReadPosRankSum=-0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375543    GT:AD:DP:GQ:PL    0/1:24,20:45:99:526,0,763
9    95256174    rs7869742    A    G    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344604    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:70,0,69
9    95256519    rs331380    C    T    387.74    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.727;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.498;QD=16.16;ReadPosRankSum=0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344604    GT:AD:DP:GQ:PL    0/1:10,14:24:99:418,0,347
9    95256593    rs11788523    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344604    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    95274261    rs2296666    A    G    1148    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.547;DB;DP=104;Dels=0.0;FS=0.864;HRun=0;HaplotypeScore=2.787;MQ=59.78;MQ0=0;MQRankSum=0.939;QD=11.04;ReadPosRankSum=-0.344;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375540    GT:AD:DP:GQ:PL    0/1:58,46:104:99:1178,0,1864
9    95274338    rs2296667    A    G    1926.27    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=6.537;DB;DP=136;Dels=0.0;FS=6.382;HRun=0;HaplotypeScore=1.8665;MQ=59.83;MQ0=0;MQRankSum=1.157;QD=14.16;ReadPosRankSum=1.743;SNPEFF_AMINO_ACID_CHANGE=S353;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_95274293_95274408;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444490    GT:AD:DP:GQ:PL    0/1:71,65:136:99:1956,0,2171
9    95279985    rs968040    C    A    1709.34    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=6.199;DB;DP=145;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=3.6751;MQ=59.78;MQ0=0;MQRankSum=1.016;QD=11.79;ReadPosRankSum=-0.019;SNPEFF_AMINO_ACID_CHANGE=P155;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_95279969_95280157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344604    GT:AD:DP:GQ:PL    0/1:82,63:145:99:1739,0,2266
9    95284873    rs9299405    A    G    767.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.206;QD=15.99;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=S92;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_95284857_95285175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344604    GT:AD:DP:GQ:PL    0/1:24,24:48:99:798,0,770
9    95284982    rs10120210    T    G    2978.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_AMINO_ACID_CHANGE=Q56P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_95284857_95285175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344604    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3011,232,0
9    95285222    rs10120292    T    C    392.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375587    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:425,33,0
9    95373790    rs2296669    C    T    288.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287996    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
9    95397418    rs1111047    C    G    1217.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287996    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1250,93,0
9    95420983    rs10992393    A    G    2327.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287996    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2361,175,0
9    95572247    rs10821018    G    A    79.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD19P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338192    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
9    95580726    rs143411689    TTTTG    T    1215.72    PASS    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=75;FS=15.558;HRun=0;HaplotypeScore=463.7231;IndelType=D;MQ=52.97;MQ0=0;MQRankSum=-3.957;QD=16.21;ReadPosRankSum=-0.282;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD19P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338192    GT:AD:DP:GQ:PL    0/1:61,14:75:99:1255,0,2122
9    95580745    rs71364316    GT    G    993.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.0;HRun=12;HaplotypeScore=359.2638;IndelType=D;MQ=52.6;MQ0=0;QD=15.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD19P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338192    GT:AD:DP:GQ:PL    1/1:20,43:66:99:1035,137,0
9    95608248    rs1040978    C    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF484;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332591    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    95618605    rs56121719    T    TA    70.44    PASS    AB=0.861;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.069;DB;DP=31;FS=0.0;HRun=12;HaplotypeScore=120.3377;IndelType=I;MQ=58.5;MQ0=0;MQRankSum=-1.069;QD=2.27;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF484;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332591    GT:AD:DP:GQ:PL    0/1:25,5:31:99:109,0,277
9    95647120    rs12685086    T    C    159    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=19;Dels=0.0;FS=2.112;HRun=2;HaplotypeScore=0.0;MQ=57.45;MQ0=0;MQRankSum=-0.609;QD=8.37;ReadPosRankSum=-0.983;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD19P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473204    GT:AD:DP:GQ:PL    0/1:12,7:19:99:189,0,369
9    95647527    rs1966189    C    A    3389.18    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.929;DB;DP=229;Dels=0.0;FS=2.259;HRun=1;HaplotypeScore=1.9954;MQ=53.77;MQ0=0;MQRankSum=0.702;QD=14.8;ReadPosRankSum=-1.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-526D8.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411450    GT:AD:DP:GQ:PL    0/1:115,113:229:99:3389,0,3608
9    95766471    rs6479445    A    T    466.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.644;QD=14.14;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337352    GT:AD:DP:GQ:PL    0/1:15,18:33:99:497,0,414
9    95777971    rs10992577    G    T    317.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=25;Dels=0.0;FS=2.409;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.097;QD=12.68;ReadPosRankSum=1.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337352    GT:AD:DP:GQ:PL    0/1:8,16:25:99:347,0,188
9    95778115    rs41273404    G    C    507.35    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=39;Dels=0.0;FS=9.824;HRun=0;HaplotypeScore=0.5784;MQ=58.08;MQ0=0;MQRankSum=1.156;QD=13.01;ReadPosRankSum=-0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337352    GT:AD:DP:GQ:PL    0/1:16,23:39:99:537,0,527
9    95780267    rs7048701    A    G    116.80    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.36;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337352    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:147,0,26
9    95780465    rs7048975    A    G    1573.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=T441;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_95780418_95780497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337352    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1606,123,0
9    95784485    rs10821054    A    T    63.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.89;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494553    GT:AD:DP:GQ:PL    0/1:5,3:8:93.15:93,0,165
9    95792388    rs9696630    C    T    114.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=14.35;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337352    GT:AD:DP:GQ:PL    0/1:4,4:8:99:145,0,124
9    95797097    rs10821058    G    A    38.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488407    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:68,0,34
9    95797999    rs4073460    C    T    185.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=20.61;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488407    GT:AD:DP:GQ:PL    0/1:3,6:9:99:215,0,101
9    95872744    rs3819011    C    T    747.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375464    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:780,60,0
9    95874070    rs2027585    G    C    392.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466929    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:426,33,0
9    95874428    rs10821071    G    A    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466929    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    95875556    rs2298242    G    A    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466929    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
9    95875575    rs2298243    G    A    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375464    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
9    95887320    rs2275848    G    T    1272.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_AMINO_ACID_CHANGE=A110D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_95887181_95887344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NINJ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375446    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1305,99,0
9    95948047    rs2398818    A    G    149.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:183,15,0
9    95992213    rs7871272    A    G    553.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:587,45,0
9    95993603    rs1936402    A    G    171.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
9    96000622    rs1539670    C    T    1243.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1276,93,0
9    96010240    rs7029968    C    A    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    96015256    rs4744201    C    T    274.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.701;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.398;QD=13.73;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=D254;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96015165_96015364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349097    GT:AD:DP:GQ:PL    0/1:10,10:20:99:305,0,204
9    96015377    rs4744202    A    G    174.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:207,15,0
9    96015398    rs4744203    A    T    76.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.98;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    0/1:4,3:7:74.49:107,0,74
9    96021312    rs10761203    G    A    1066.15    PASS    AB=0.322;AC=1;AF=0.50;AN=2;BaseQRankSum=3.522;DB;DP=59;Dels=0.0;FS=1.178;HRun=0;HaplotypeScore=2.312;MQ=51.98;MQ0=0;MQRankSum=-0.68;QD=18.07;ReadPosRankSum=0.416;SNPEFF_AMINO_ACID_CHANGE=V440M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96021213_96021896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349097    GT:AD:DP:GQ:PL    0/1:19,40:59:99:1096,0,343
9    96021423    rs45534637    C    T    388.34    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.11;MQ0=0;MQRankSum=0.808;QD=14.94;ReadPosRankSum=-1.024;SNPEFF_AMINO_ACID_CHANGE=P477S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96021213_96021896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349097    GT:AD:DP:GQ:PL    0/1:9,17:26:99:418,0,265
9    96024794    rs7854000    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    96024859    rs1936403    A    G    537.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448039    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:571,48,0
9    96025771    rs6479467    G    A    126.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448039    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
9    96030230    rs7856268    T    C    1295.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=58.37;MQ0=0;QD=30.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462595    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1328,105,0
9    96030392    rs10761205    G    T    851.83    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=54;Dels=0.0;FS=3.086;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.093;QD=15.77;ReadPosRankSum=0.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462595    GT:AD:DP:GQ:PL    0/1:21,33:54:99:882,0,686
9    96031262    rs1936401    T    C    1470.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462595    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1503,111,0
9    96050972    rs41308906    C    T    891.62    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=48;Dels=0.0;FS=5.693;HRun=0;HaplotypeScore=0.9578;MQ=58.55;MQ0=0;MQRankSum=1.452;QD=18.58;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    0/1:19,29:48:99:922,0,580
9    96051521    rs2169756    A    G    296.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=26.96;SNPEFF_AMINO_ACID_CHANGE=Q1107;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96051070_96051902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427277    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:329,24,0
9    96052295    rs4744216    C    G    57.50    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.19;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=A1246;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96052260_96052329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427277    GT:AD:DP:GQ:PL    0/1:5,3:8:87.50:87,0,182
9    96061269    rs1111776    A    G    231.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297954    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:265,21,0
9    96097662    rs4744219    G    A    152.28    MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.3;MQ0=7;MQRankSum=0.427;QD=4.48;ReadPosRankSum=0.075;SNPEFF_AMINO_ACID_CHANGE=A120V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96097656_96097942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375419    GT:AD:DP:GQ:PL    0/1:24,10:34:99:182,0,241
9    96097747    rs78436873    C    T    1188.86    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=27.51;MQ0=5;MQRankSum=1.663;QD=21.62;ReadPosRankSum=0.97;SNPEFF_AMINO_ACID_CHANGE=G92S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96097656_96097942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375419    GT:AD:DP:GQ:PL    1/1:4,51:55:99:1222,117,0
9    96097916    .    G    A    55.70    MQFilter40;QDFilter2    AB=0.898;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.7;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.83;MQ0=36;MQRankSum=2.546;QD=1.14;ReadPosRankSum=1.003;SNPEFF_AMINO_ACID_CHANGE=G35;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96097656_96097942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf129;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375419    GT:AD:DP:GQ:PL    0/1:44,5:49:59.02:86,0,59
9    96209943    rs10821128    T    C    1572.41    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=100;Dels=0.0;FS=0.794;HRun=0;HaplotypeScore=0.9578;MQ=59.77;MQ0=0;MQRankSum=-0.902;QD=15.72;ReadPosRankSum=-0.284;SNPEFF_AMINO_ACID_CHANGE=K241E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96208776_96209979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM120AOS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375412    GT:AD:DP:GQ:PL    0/1:46,54:100:99:1602,0,1331
9    96213291    rs10992740    A    G    716.30    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.831;DB;DP=67;Dels=0.0;FS=8.749;HRun=0;HaplotypeScore=0.5784;MQ=59.66;MQ0=0;MQRankSum=0.039;QD=10.69;ReadPosRankSum=-1.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM120AOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375412    GT:AD:DP:GQ:PL    0/1:35,31:67:99:746,0,1231
9    96214928    rs1055710    G    A    379.80    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.645;QD=13.1;ReadPosRankSum=0.783;SNPEFF_AMINO_ACID_CHANGE=L22F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96214429_96215874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM120AOS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375412    GT:AD:DP:GQ:PL    0/1:13,15:28:99:410,0,362
9    96238578    rs10821135    C    T    556.64    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.268;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.831;QD=13.58;ReadPosRankSum=-1.648;SNPEFF_AMINO_ACID_CHANGE=H254;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96238538_96238620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277165    GT:AD:DP:GQ:PL    0/1:22,19:41:99:587,0,671
9    96238731    rs10821136    C    T    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277165    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
9    96259582    rs2297376    C    T    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.64;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277165    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,144
9    96289269    rs10739950    C    T    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277165    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    96292025    rs10761232    A    T    423.10    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.617;DB;DP=32;Dels=0.0;FS=2.222;HRun=3;HaplotypeScore=0.9933;MQ=59.28;MQ0=0;MQRankSum=-0.929;QD=13.22;ReadPosRankSum=0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277165    GT:AD:DP:GQ:PL    0/1:17,15:32:99:453,0,520
9    96392371    rs10992813    G    A    129.52    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=19;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.139;QD=6.82;ReadPosRankSum=0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:14,5:19:99:160,0,446
9    96398999    rs10821185    C    T    85.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
9    96407822    rs6479500    A    G    192.99    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.127;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.935;QD=11.35;ReadPosRankSum=-0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:8,9:17:99:223,0,274
9    96407848    rs7851271    A    G    167.67    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.451;DB;DP=27;Dels=0.0;FS=2.378;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.606;QD=6.21;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:17,10:27:99:198,0,494
9    96415653    rs3750354    C    T    446.66    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.644;QD=14.41;ReadPosRankSum=1.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:15,16:31:99:477,0,450
9    96415899    rs11793637    A    G    95.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
9    96416619    rs144358064    C    T    136.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=57.17;MQ0=0;MQRankSum=0.47;QD=13.69;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,149
9    96420390    rs3763605    A    G    40.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=4.02;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:6,4:10:70.18:70,0,184
9    96422420    rs10992836    T    C    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
9    96425138    rs3750358    T    C    1076.27    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.786;DB;DP=89;Dels=0.0;FS=1.705;HRun=2;HaplotypeScore=1.399;MQ=59.27;MQ0=0;MQRankSum=-0.342;QD=12.09;ReadPosRankSum=-0.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:46,43:89:99:1106,0,1353
9    96425363    rs3750359    G    A    85.83    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=16;Dels=0.0;FS=2.769;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.303;QD=5.36;ReadPosRankSum=-2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:12,4:16:99:116,0,378
9    96425777    rs7036592    C    T    597.78    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=44;Dels=0.0;FS=1.194;HRun=0;HaplotypeScore=0.6651;MQ=58.95;MQ0=0;MQRankSum=0.207;QD=13.59;ReadPosRankSum=-0.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:23,21:44:99:628,0,637
9    96426083    rs7028306    T    C    78.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=66.83;MQ0=0;QD=26.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
9    96428457    rs10992840    A    G    102.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=10.24;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,203
9    96439698    rs2398862    A    G    192.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.53;QD=12.85;ReadPosRankSum=-1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359246    GT:AD:DP:GQ:PL    0/1:6,9:15:99:223,0,203
9    96714491    rs11793856    C    G    108.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=15;Dels=0.0;FS=2.363;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=7.23;ReadPosRankSum=-0.71;SNPEFF_AMINO_ACID_CHANGE=P240;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_96713628_96714610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253968    GT:AD:DP:GQ:PL    0/1:9,6:15:99:138,0,245
9    96714981    rs12684081    G    A    131.82    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=7.32;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253968    GT:AD:DP:GQ:PL    0/1:11,7:18:99:162,0,337
9    96827123    rs10993039    C    G    155.59    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.921;QD=8.19;ReadPosRankSum=1.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375360    GT:AD:DP:GQ:PL    0/1:13,6:19:99:186,0,427
9    97040914    rs11795346    G    A    37.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF169;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395395    GT:AD:DP:GQ:PL    0/1:1,2:3:25.33:68,0,25
9    97054406    rs3131909    C    T    167.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF169;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340911    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
9    97080944    rs150455117    GAGA    G    288.09    PASS    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=3.718;DB;DP=36;FS=1.547;HRun=0;HaplotypeScore=133.6185;IndelType=D;MQ=19.13;MQ0=24;MQRankSum=0.585;QD=4.3;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=S525-;SNPEFF_CODON_CHANGE=tct/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_9_97080478_97081532;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375347    GT:AD:DP:GQ:PL    0/1:54,13:36:99:327,0,1690
9    97081795    rs150662309    A    G    343.33    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=45;Dels=0.0;FS=1.818;HRun=0;HaplotypeScore=0.0;MQ=35.93;MQ0=3;MQRankSum=-0.463;QD=7.63;ReadPosRankSum=1.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253262    GT:AD:DP:GQ:PL    0/1:27,18:45:99:373,0,674
9    97082973    rs141033665    C    T    40    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.08;MQ0=2;MQRankSum=-0.742;QD=4.0;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253262    GT:AD:DP:GQ:PL    0/1:3,6:10:25.78:70,0,26
9    97084397    rs2769782    T    C    592.42    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.851;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.9;MQ0=3;MQRankSum=-5.797;QD=8.59;ReadPosRankSum=-0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253262    GT:AD:DP:GQ:PL    0/1:39,30:69:99:622,0,1268
9    97090722    rs7019931    A    C    154.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.49;MQ0=0;MQRankSum=-1.369;QD=11.91;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253262    GT:AD:DP:GQ:PL    0/1:7,6:13:99:185,0,244
9    97177641    rs12338572    A    G    149.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.88;MQ0=0;MQRankSum=0.101;QD=10.69;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277183    GT:AD:DP:GQ:PL    0/1:7,7:14:99:180,0,220
9    97177753    rs1752783    T    G    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    97191379    rs7036474    G    A    277.79    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.52;MQ0=0;MQRankSum=-0.625;QD=16.34;ReadPosRankSum=-0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277183    GT:AD:DP:GQ:PL    0/1:8,9:17:99:308,0,265
9    97216163    rs7037298    G    T    250.43    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=1.644;QD=13.91;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277183    GT:AD:DP:GQ:PL    0/1:8,10:18:99:280,0,260
9    97220485    rs34284322    T    TCTC    745.03    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.272;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=63.0559;IndelType=I;MQ=55.6;MQ0=0;MQRankSum=-0.467;QD=33.87;ReadPosRankSum=-1.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277183    GT:AD:DP:GQ:PL    0/1:10,11:22:99:784,0,384
9    97221434    rs9409765    G    A    1144.34    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=4.017;DB;DP=84;Dels=0.0;FS=4.006;HRun=0;HaplotypeScore=0.9789;MQ=59.45;MQ0=0;MQRankSum=-0.919;QD=13.62;ReadPosRankSum=-0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277183    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1174,0,1057
9    97321127    rs1048510    T    C    145.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=14.59;ReadPosRankSum=-1.447;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375337    GT:AD:DP:GQ:PL    0/1:4,6:10:99:176,0,128
9    97321172    rs1543185    T    C    283.04    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.144;QD=16.65;ReadPosRankSum=-1.973;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375337    GT:AD:DP:GQ:PL    0/1:8,9:17:99:313,0,235
9    97321508    rs2280300    T    C    130.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375337    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:164,15,0
9    97325726    rs41281154    A    G    1090.61    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.215;DB;DP=73;Dels=0.0;FS=1.929;HRun=0;HaplotypeScore=1.7834;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=14.94;ReadPosRankSum=-0.831;SNPEFF_AMINO_ACID_CHANGE=Y241;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_97325624_97325743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375337    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1121,0,901
9    97365642    rs9695    G    A    388.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414122    GT:AD:DP:GQ:PL    1/1:1,13:14:30.10:421,30,0
9    97365720    rs1769257    T    C    474.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=G320;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_97365415_97365854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375326    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:507,39,0
9    97367898    rs28369760    TAAGA    T    909.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=93.7435;IndelType=D;MQ=54.57;MQ0=0;QD=50.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414122    GT:AD:DP:GQ:PL    1/1:1,17:18:51.17:952,51,0
9    97369083    rs2297084    G    A    742.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=32.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414122    GT:AD:DP:GQ:PL    1/1:0,23:23:60.16:775,60,0
9    97369149    rs1769259    C    T    1234.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=R134K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_97369097_97369234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414122    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1268,99,0
9    97372062    rs3824484    C    T    315.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375326    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:348,27,0
9    97427531    rs4743965    C    A    1212.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375325    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1245,93,0
9    97768286    rs10761364    T    C    2137.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8188;MQ=60.0;MQ0=0;MQRankSum=0.483;QD=35.03;ReadPosRankSum=0.369;SNPEFF_AMINO_ACID_CHANGE=L126S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_97768282_97768404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375316    GT:AD:DP:GQ:PL    1/1:1,60:61:99:2170,129,0
9    97822941    rs1888944    T    C    1722.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297979    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1755,132,0
9    97869692    rs2282216    A    G    90.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477942    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
9    97873957    rs4647534    A    G    940.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.124;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.867;QD=32.42;ReadPosRankSum=-1.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464653    GT:AD:DP:GQ:PL    1/1:1,28:29:39.49:973,39,0
9    97933252    rs3737142    T    C    133.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433829    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
9    98209458    rs62637631    G    A    239.87    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.077;QD=10.43;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=S1209;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_98209193_98209733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418258    GT:AD:DP:GQ:PL    0/1:12,11:23:99:270,0,387
9    98218474    rs45603537    G    GC    143.79    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=15;FS=4.472;HRun=1;HaplotypeScore=32.376;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=9.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547615    GT:AD:DP:GQ:PL    0/1:10,5:15:99:183,0,309
9    98221861    rs2236406    T    C    360.83    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=1.058;QD=15.69;ReadPosRankSum=1.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331920    GT:AD:DP:GQ:PL    0/1:8,15:23:99:391,0,247
9    98224360    rs2274692    C    G    318    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=23;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.523;QD=13.83;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331920    GT:AD:DP:GQ:PL    0/1:12,11:23:99:348,0,396
9    98229389    rs2066829    C    G    248.27    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.363;DB;DP=27;Dels=0.0;FS=2.12;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.104;QD=8.87;ReadPosRankSum=0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375271    GT:AD:DP:GQ:PL    0/1:16,11:27:99:278,0,476
9    98230924    rs68131644    AT    A    324.45    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=3.744;DB;DP=59;FS=3.054;HRun=13;HaplotypeScore=224.7819;IndelType=D;MQ=58.96;MQ0=0;MQRankSum=0.701;QD=5.5;ReadPosRankSum=0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375271    GT:AD:DP:GQ:PL    0/1:33,24:59:99:363,0,684
9    98231908    rs28702657    G    A    345.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.127;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=59.3;MQ0=0;MQRankSum=0.199;QD=10.46;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331920    GT:AD:DP:GQ:PL    0/1:18,15:33:99:375,0,609
9    98238358    rs2066836    G    A    184.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.34;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=A227;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_98238316_98238441;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375271    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,164
9    98240120    rs2297086    G    A    152.54    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468211    GT:AD:DP:GQ:PL    0/1:1,5:6:14.44:182,0,14
9    98242112    rs2274694    A    G    392.13    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.708;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.339;QD=16.34;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468211    GT:AD:DP:GQ:PL    0/1:11,13:24:99:422,0,362
9    98242925    rs2297087    A    G    243.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=20;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.55;QD=12.16;ReadPosRankSum=0.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468211    GT:AD:DP:GQ:PL    0/1:10,10:20:99:273,0,330
9    98242984    rs2297088    G    A    189.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=21.03;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468211    GT:AD:DP:GQ:PL    0/1:3,6:9:90.81:219,0,91
9    98270320    rs148507954    AGTGAGTGT    A    593.65    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=121.0344;IndelType=D;MQ=42.08;MQ0=0;MQRankSum=-1.381;QD=42.4;ReadPosRankSum=1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331920    GT:AD:DP:GQ:PL    0/1:5,9:14:99:633,0,622
9    98638288    rs690528    A    G    37.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.66;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_9_98637983_98638366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf102;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000288985    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:68,0,29
9    98678164    rs683829    G    T    95.46    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.825;QD=7.34;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf102;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288985    GT:AD:DP:GQ:PL    0/1:9,4:13:99:125,0,287
9    98997910    rs8190570    ATCTTTGTGG    A    1040.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=155.7127;IndelType=D;MQ=34.14;MQ0=0;QD=61.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484816    GT:AD:DP:GQ:PL    1/1:4,13:17:36.12:1082,36,0
9    99003264    rs2066485    C    T    724.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375262    GT:AD:DP:GQ:PL    1/1:0,24:25:60.17:757,60,0
9    99006889    rs913580    T    C    83.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=53.95;MQ0=0;QD=20.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375262    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
9    99013663    rs408876    A    G    1155.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375262    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1189,90,0
9    99060612    rs7029101    T    C    2396.88    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=180;Dels=0.0;FS=1.804;HRun=0;HaplotypeScore=0.8941;MQ=59.51;MQ0=0;MQRankSum=-0.341;QD=13.32;ReadPosRankSum=0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375262    GT:AD:DP:GQ:PL    0/1:101,79:180:99:2427,0,3316
9    99060882    rs3925451    G    A    204.88    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.662;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=7.59;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375262    GT:AD:DP:GQ:PL    0/1:16,10:27:99:235,0,526
9    99064202    rs8190483    C    CA    453.81    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=30;FS=7.367;HRun=7;HaplotypeScore=77.0651;IndelType=I;MQ=59.23;MQ0=0;MQRankSum=-0.241;QD=15.13;ReadPosRankSum=-0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375262    GT:AD:DP:GQ:PL    0/1:14,16:30:99:493,0,290
9    99314012    rs12004815    C    T    688.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.084;QD=19.66;ReadPosRankSum=0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CDC14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463547    GT:AD:DP:GQ:PL    0/1:14,21:35:99:718,0,479
9    99581568    rs34763627    T    C    1298.39    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.931;DB;DP=81;Dels=0.0;FS=5.85;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.319;QD=16.03;ReadPosRankSum=-0.029;SNPEFF_AMINO_ACID_CHANGE=N114S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_99579915_99582060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF782;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535338    GT:AD:DP:GQ:PL    0/1:35,46:81:99:1328,0,1104
9    99694799    rs147699896    C    T    244.55    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.21;DB;DP=43;Dels=0.0;FS=4.058;HRun=0;HaplotypeScore=1.9916;MQ=28.22;MQ0=14;MQRankSum=0.642;QD=5.69;ReadPosRankSum=-1.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354649    GT:AD:DP:GQ:PL    0/1:25,18:43:99:275,0,455
9    99799101    rs7037968    C    T    365.43    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.71;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7446;MQ=54.98;MQ0=0;MQRankSum=-1.71;QD=15.89;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479932    GT:AD:DP:GQ:PL    0/1:8,15:23:99:395,0,154
9    99920155    rs12003313    A    C    218.54    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.435;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.88;MQ0=0;MQRankSum=-0.741;QD=13.66;ReadPosRankSum=-1.164;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-498P14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354752    GT:AD:DP:GQ:PL    0/1:7,9:16:99:249,0,226
9    99940368    rs6477982    C    T    79.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.81;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-498P14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354752    GT:AD:DP:GQ:PL    0/1:2,3:5:70.24:109,0,70
9    100053492    rs2818243    C    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    100054705    rs2615143    T    C    262.92    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=26.29;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:2,8:10:43.83:293,0,44
9    100054969    rs2615144    G    A    576.82    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DB;DP=36;Dels=0.0;FS=3.296;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.674;QD=16.02;ReadPosRankSum=1.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:15,21:36:99:607,0,477
9    100069900    rs3214072    A    G    41.39    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=3.76;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:8,3:11:71.38:71,0,292
9    100070351    rs12683119    G    C    600.89    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.16;DB;DP=50;Dels=0.0;FS=2.864;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.777;QD=12.02;ReadPosRankSum=-1.415;SNPEFF_AMINO_ACID_CHANGE=S185;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100070265_100070414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:24,26:50:99:631,0,726
9    100070435    rs2401382    C    T    363.17    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.564;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.78;MQ0=0;MQRankSum=1.733;QD=19.11;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:7,12:19:99:393,0,168
9    100072076    rs10817403    G    A    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472746    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
9    100075401    rs10981557    C    G    400.57    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.688;QD=13.81;ReadPosRankSum=1.469;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472746    GT:AD:DP:GQ:PL    0/1:16,13:29:99:431,0,566
9    100075702    rs7856924    T    C    249.87    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=21;Dels=0.0;FS=3.468;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=11.9;ReadPosRankSum=-0.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472746    GT:AD:DP:GQ:PL    0/1:11,10:21:99:280,0,376
9    100082608    rs10759619    A    G    220.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.964;QD=11.04;ReadPosRankSum=1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:12,8:20:99:251,0,425
9    100087345    rs3747496    A    G    305.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=28;Dels=0.0;FS=1.598;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.391;QD=10.9;ReadPosRankSum=-1.126;SNPEFF_AMINO_ACID_CHANGE=H627R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100087301_100087474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395220    GT:AD:DP:GQ:PL    0/1:14,14:28:99:335,0,405
9    100088971    rs10981625    G    A    1071.43    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.571;DB;DP=70;Dels=0.0;FS=1.536;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.366;QD=15.31;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:33,37:70:99:1101,0,1162
9    100090143    rs1870859    G    A    443.42    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=5.551;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=-0.258;QD=8.69;ReadPosRankSum=0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:36,15:51:99:473,0,1095
9    100092374    .    T    G    174.99    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.412;DP=44;Dels=0.02;FS=3.245;HRun=6;HaplotypeScore=7.2564;MQ=40.47;MQ0=0;MQRankSum=-3.551;QD=3.89;ReadPosRankSum=4.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:12,32:44:99:205,0,347
9    100092515    rs7026893    C    T    1841.04    PASS    AB=0.311;AC=1;AF=0.50;AN=2;BaseQRankSum=1.451;DB;DP=90;Dels=0.0;FS=7.598;HRun=2;HaplotypeScore=0.9789;MQ=56.04;MQ0=0;MQRankSum=1.216;QD=20.46;ReadPosRankSum=0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:28,62:90:99:1871,0,811
9    100092968    rs113264216    A    AGAGGAG    1103.71    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.732;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=196.2832;IndelType=I;MQ=54.68;MQ0=0;MQRankSum=-1.715;QD=29.04;ReadPosRankSum=-0.999;SNPEFF_AMINO_ACID_CHANGE=-773EE;SNPEFF_CODON_CHANGE=-/GAGGAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_9_100092604_100093049;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411667    GT:AD:DP:GQ:PL    0/1:24,11:38:99:1143,0,862
9    100093102    rs7847332    T    G    297.92    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.188;DB;DP=39;Dels=0.0;FS=1.234;HRun=0;HaplotypeScore=0.0;MQ=57.09;MQ0=0;MQRankSum=-0.217;QD=7.64;ReadPosRankSum=1.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:24,15:39:99:328,0,780
9    100105735    rs1947717    T    C    440.03    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.626;DB;DP=40;Dels=0.0;FS=2.99;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.279;QD=11.0;ReadPosRankSum=-1.034;SNPEFF_AMINO_ACID_CHANGE=C837;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100105622_100105845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411667    GT:AD:DP:GQ:PL    0/1:25,15:40:99:470,0,768
9    100105782    rs2061634    C    G    430.19    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.254;DB;DP=43;Dels=0.0;FS=6.873;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.335;QD=10.0;ReadPosRankSum=-0.236;SNPEFF_AMINO_ACID_CHANGE=S853C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100105622_100105845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411667    GT:AD:DP:GQ:PL    0/1:26,17:43:99:460,0,756
9    100116833    rs10125198    G    C    676.75    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=2.327;DB;DP=54;Dels=0.0;FS=4.23;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.035;QD=12.53;ReadPosRankSum=-1.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528678    GT:AD:DP:GQ:PL    0/1:31,23:54:99:707,0,954
9    100124787    rs3802471    T    C    667.01    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.813;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.588;QD=15.16;ReadPosRankSum=0.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471314    GT:AD:DP:GQ:PL    0/1:18,26:44:99:697,0,541
9    100132194    rs2169456    C    A    362.82    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.822;DB;DP=25;Dels=0.0;FS=1.721;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.441;QD=14.51;ReadPosRankSum=1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357054    GT:AD:DP:GQ:PL    0/1:12,13:25:99:393,0,420
9    100190780    rs1381532    A    G    567.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.414;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.864;MQ=60.0;MQ0=0;MQRankSum=1.251;QD=12.9;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=L11;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100190742_100190954;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355295    GT:AD:DP:GQ:PL    0/1:22,22:44:99:598,0,744
9    100193113    rs7874295    T    C    377.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.812;QD=17.98;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355295    GT:AD:DP:GQ:PL    0/1:9,12:21:99:408,0,312
9    100194406    rs2045732    T    C    1130.37    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.541;DB;DP=91;Dels=0.0;FS=4.17;HRun=0;HaplotypeScore=3.0316;MQ=60.0;MQ0=0;MQRankSum=0.189;QD=12.42;ReadPosRankSum=-0.262;SNPEFF_AMINO_ACID_CHANGE=V150A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100194307_100194520;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355295    GT:AD:DP:GQ:PL    0/1:53,38:91:99:1160,0,1740
9    100201360    rs3214069    A    G    105.26    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.05;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355295    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:135,0,28
9    100226982    rs4278253    G    A    121.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.34;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355295    GT:AD:DP:GQ:PL    0/1:1,4:5:8.65:151,0,9
9    100227011    rs4397526    T    C    108.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=12.09;ReadPosRankSum=1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355295    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,167
9    100318275    rs867585    G    A    76.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259365    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
9    100353801    rs2805792    G    T    504.98    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.185;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=14.43;ReadPosRankSum=0.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259365    GT:AD:DP:GQ:PL    0/1:18,17:35:99:535,0,607
9    100361864    rs958346    C    T    474.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341170    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:508,39,0
9    100366953    rs2805779    A    G    1428    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259365    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1461,108,0
9    100388197    rs2773347    C    T    1623.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_AMINO_ACID_CHANGE=R83Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100387963_100388279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSTD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341170    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1656,120,0
9    100407494    .    A    T    297.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.554;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.834;QD=7.09;ReadPosRankSum=-1.019;SNPEFF_AMINO_ACID_CHANGE=E159D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100407399_100407506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375147    GT:AD:DP:GQ:PL    0/1:24,18:42:99:328,0,709
9    100433233    rs2805837    G    A    254.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375130    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:288,24,0
9    100444951    rs2805835    C    G    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496104    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
9    100459578    rs1800975    T    C    112.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462523    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:145,12,0
9    100616583    rs3021523    T    C    486.37    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.207;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=57.29;MQ0=0;MQRankSum=-1.29;QD=9.35;ReadPosRankSum=-0.672;SNPEFF_AMINO_ACID_CHANGE=L129;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100615536_100618986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375123    GT:AD:DP:GQ:PL    0/1:25,27:52:99:516,0,605
9    100617375    rs7046645    T    C    34.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.99;ReadPosRankSum=0.922;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375123    GT:AD:DP:GQ:PL    0/1:5,2:7:64.93:65,0,151
9    100666931    rs6586    C    T    811.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.27;MQ0=0;MQRankSum=1.563;QD=12.88;ReadPosRankSum=0.451;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325350    GT:AD:DP:GQ:PL    0/1:36,27:63:99:842,0,1186
9    100672338    rs2282192    C    T    552.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=40;Dels=0.0;FS=4.863;HRun=0;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=13.81;ReadPosRankSum=-0.324;SNPEFF_AMINO_ACID_CHANGE=V178M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100672242_100674753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf156;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375118    GT:AD:DP:GQ:PL    0/1:21,18:40:99:582,0,660
9    100675944    rs2120263    C    T    68.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.55;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325350    GT:AD:DP:GQ:PL    0/1:5,3:8:98.39:98,0,182
9    100675976    rs2120262    C    A    152.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.09;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf156;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325350    GT:AD:DP:GQ:PL    0/1:3,5:8:99:183,0,101
9    100745902    rs3739672    A    G    147.71    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.46;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANP32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339399    GT:AD:DP:GQ:PL    0/1:3,5:8:69.43:178,0,69
9    100756891    rs111744699    C    CT    424.96    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.122;DB;DP=38;FS=0.0;HRun=6;HaplotypeScore=81.333;IndelType=I;MQ=59.51;MQ0=0;MQRankSum=1.11;QD=11.18;ReadPosRankSum=0.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANP32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339399    GT:AD:DP:GQ:PL    0/1:23,15:38:99:464,0,475
9    100774646    rs987142    A    T    359.82    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=22;Dels=0.0;FS=6.193;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.204;QD=16.36;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANP32B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339399    GT:AD:DP:GQ:PL    0/1:9,13:22:99:390,0,308
9    100819070    rs3199064    T    G    101.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.198;QD=11.27;ReadPosRankSum=-0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480925    GT:AD:DP:GQ:PL    0/1:3,6:9:57.61:131,0,58
9    100819192    rs3739670    C    T    138.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=11.56;ReadPosRankSum=-0.387;SNPEFF_AMINO_ACID_CHANGE=D34;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100819021_100819222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000210444    GT:AD:DP:GQ:PL    0/1:7,5:12:99:169,0,144
9    100822940    rs7846880    G    A    158.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.13;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.968;QD=11.3;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210444    GT:AD:DP:GQ:PL    0/1:8,6:14:99:188,0,207
9    100823084    rs13049    T    C    1774.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=A51;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100823064_100823279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000210444    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1808,132,0
9    100823360    rs7020081    C    A    130.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=10.84;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210444    GT:AD:DP:GQ:PL    0/1:6,6:12:99:160,0,183
9    100843417    rs4237190    A    G    315.26    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=17.51;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=*116W;SNPEFF_CODON_CHANGE=tAg/tGg;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_9_100843098_100844448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANS;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000427646    GT:AD:DP:GQ:PL    0/1:7,11:18:99:345,0,195
9    100845007    rs2281732    A    G    66.84    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=13.37;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415280    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:97,0,30
9    100849500    rs1059273    G    T    858.42    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.287;DB;DP=63;Dels=0.0;FS=1.82;HRun=1;HaplotypeScore=1.565;MQ=59.34;MQ0=0;MQRankSum=-1.622;QD=13.63;ReadPosRankSum=-2.243;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210444    GT:AD:DP:GQ:PL    0/1:34,29:63:99:888,0,1119
9    100854066    rs10623512    A    AAAAT    294.03    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=45.5126;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.309;QD=24.5;ReadPosRankSum=1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478401    GT:AD:DP:GQ:PL    0/1:7,5:12:99:333,0,275
9    100961704    rs34769888    C    T    1248.61    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.775;DB;DP=73;Dels=0.0;FS=8.119;HRun=1;HaplotypeScore=0.9789;MQ=58.73;MQ0=0;MQRankSum=0.334;QD=17.1;ReadPosRankSum=0.346;SNPEFF_AMINO_ACID_CHANGE=E456K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100961311_100961870;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375063    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1279,0,897
9    100962802    rs2282434    A    G    110.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.39;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342112    GT:AD:DP:GQ:PL    0/1:2,4:6:65.40:140,0,65
9    100963653    rs3739668    T    C    154.49    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.75;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342112    GT:AD:DP:GQ:PL    0/1:1,5:6:23.17:184,0,23
9    100965472    rs3739667    C    T    587.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.045;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.48;MQ0=0;MQRankSum=-0.739;QD=13.36;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342112    GT:AD:DP:GQ:PL    0/1:22,22:44:99:618,0,665
9    100970850    rs59136023    C    CG    293.65    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.069;DB;DP=17;FS=3.274;HRun=0;HaplotypeScore=63.7311;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=17.27;ReadPosRankSum=-1.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465784    GT:AD:DP:GQ:PL    0/1:9,8:17:99:333,0,327
9    100970881    rs10985441    A    G    456.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.524;DB;DP=32;Dels=0.0;FS=3.841;HRun=1;HaplotypeScore=1.9472;MQ=60.0;MQ0=0;MQRankSum=-0.886;QD=14.25;ReadPosRankSum=-0.132;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465784    GT:AD:DP:GQ:PL    0/1:16,16:32:99:486,0,451
9    100971348    rs3739666    T    C    2894.87    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.894;DB;DP=224;Dels=0.0;FS=1.734;HRun=0;HaplotypeScore=3.1322;MQ=59.59;MQ0=0;MQRankSum=1.094;QD=12.92;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=A124;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100970950_100971426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375063    GT:AD:DP:GQ:PL    0/1:114,109:224:99:2925,0,3386
9    100975358    rs145665958    G    A    432.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.25;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=-1.304;QD=17.31;ReadPosRankSum=1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342112    GT:AD:DP:GQ:PL    0/1:10,15:25:99:463,0,305
9    100983080    rs148599243    G    A    310.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=15;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.919;QD=20.7;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342112    GT:AD:DP:GQ:PL    0/1:5,10:15:99:340,0,107
9    100995721    rs879369    A    G    411.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.916;DB;DP=36;Dels=0.0;FS=4.914;HRun=0;HaplotypeScore=0.9983;MQ=59.36;MQ0=0;MQRankSum=0.017;QD=11.44;ReadPosRankSum=-0.811;SNPEFF_AMINO_ACID_CHANGE=L253S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_100995698_100995831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375064    GT:AD:DP:GQ:PL    0/1:18,18:36:99:442,0,631
9    101006216    rs10818667    A    G    126.37    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.8;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342112    GT:AD:DP:GQ:PL    0/1:3,5:8:99:156,0,100
9    101006436    rs10818668    C    A    134.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=16;Dels=0.0;FS=2.307;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.681;QD=8.43;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342112    GT:AD:DP:GQ:PL    0/1:10,6:16:99:165,0,287
9    101006443    rs10818669    T    C    119.10    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=16;Dels=0.0;FS=2.307;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.813;QD=7.44;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342112    GT:AD:DP:GQ:PL    0/1:10,6:16:99:149,0,291
9    101340301    rs2808536    A    C    650.26    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.667;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.92;MQ0=0;MQRankSum=1.392;QD=12.5;ReadPosRankSum=-0.33;SNPEFF_AMINO_ACID_CHANGE=P125;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_101340217_101340354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259455    GT:AD:DP:GQ:PL    0/1:27,25:52:99:680,0,795
9    101340316    rs3750344    T    C    574.70    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.761;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.96;MQ0=0;MQRankSum=0.813;QD=10.64;ReadPosRankSum=-0.152;SNPEFF_AMINO_ACID_CHANGE=A120;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_101340217_101340354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259455    GT:AD:DP:GQ:PL    0/1:29,25:54:99:605,0,850
9    101340425    rs3750343    A    G    261.26    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=24;Dels=0.0;FS=7.005;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.463;QD=10.89;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259455    GT:AD:DP:GQ:PL    0/1:13,11:24:99:291,0,451
9    101340440    rs2808537    A    G    312.30    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.755;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=15.62;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259455    GT:AD:DP:GQ:PL    0/1:9,10:20:99:342,0,309
9    101475103    rs143853333    A    G    84.14    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.303;QD=5.26;ReadPosRankSum=0.667;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABBR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259455    GT:AD:DP:GQ:PL    0/1:12,4:16:99:114,0,415
9    101533220    rs6415847    C    T    754.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=V343I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_101533178_101533328;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375019    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:787,60,0
9    101539601    rs4742741    G    A    589.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353234    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:622,48,0
9    101544627    rs7020056    A    G    82.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466120    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
9    101552955    rs7027771    T    C    455.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=28.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353234    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:488,39,0
9    101553014    rs7038640    G    T    182.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=22.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353234    GT:AD:DP:GQ:PL    1/1:0,8:8:18.03:216,18,0
9    101585444    rs2295922    G    C    437.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375011    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:470,36,0
9    101585608    .    G    T    569.46    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DP=33;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.931;QD=17.26;ReadPosRankSum=1.197;SNPEFF_AMINO_ACID_CHANGE=A148S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_101585538_101585707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375011    GT:AD:DP:GQ:PL    0/1:14,19:33:99:599,0,456
9    101585831    rs2295924    C    T    395.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375011    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:429,33,0
9    101602171    rs2277189    C    G    684.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375011    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:717,54,0
9    101606549    rs1885608    G    T    436.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375011    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:469,36,0
9    101778265    rs2297603    G    T    99.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=9.08;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=G474V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_101778258_101778401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL15A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536083    GT:AD:DP:GQ:PL    0/1:6,5:11:99:130,0,204
9    101798384    rs116990167    G    A    386.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.43;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=19.33;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375001    GT:AD:DP:GQ:PL    0/1:8,12:20:99:417,0,241
9    101814626    rs4142986    C    G    575.31    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=1.383;DB;DP=31;Dels=0.0;FS=1.773;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.475;QD=18.56;ReadPosRankSum=1.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375001    GT:AD:DP:GQ:PL    0/1:11,20:31:99:605,0,242
9    101829135    rs116994320    A    T    299.61    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.564;QD=10.7;ReadPosRankSum=1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375001    GT:AD:DP:GQ:PL    0/1:17,11:28:99:330,0,574
9    102067317    rs790288    T    G    273.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT8P11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409686    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:307,24,0
9    102067887    rs395420    G    A    4068.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.2;MQ0=0;QD=35.07;SNPEFF_AMINO_ACID_CHANGE=R165Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_102067394_102068893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT8P11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409686    GT:AD:DP:GQ:PL    1/1:0,116:116:99:4069,298,0
9    102068058    rs184437    A    G    2053.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_AMINO_ACID_CHANGE=N222S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_102067394_102068893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT8P11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409686    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2087,153,0
9    102068344    rs790287    C    G    1116.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=S317R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_102067394_102068893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT8P11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409686    GT:AD:DP:GQ:PL    1/1:0,34:34:90.27:1149,90,0
9    102068832    rs170462    G    A    1864.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=34.53;SNPEFF_AMINO_ACID_CHANGE=R480K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_102067394_102068893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT8P11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409686    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1898,144,0
9    102068912    rs182704    C    T    1021.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=26.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT8P11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409686    GT:AD:DP:GQ:PL    1/1:0,39:39:93.18:1054,93,0
9    102591042    rs12344570    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=15.04;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=S240G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_102590323_102591275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR4A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338488    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:76,6,0
9    102595685    rs10988904    C    T    928.46    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=85;Dels=0.0;FS=4.297;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.349;QD=10.92;ReadPosRankSum=1.41;SNPEFF_AMINO_ACID_CHANGE=A225;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_102595564_102595806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR4A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395096    GT:AD:DP:GQ:PL    0/1:53,32:85:99:958,0,1540
9    102625834    rs7032301    T    C    239.82    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.049;QD=14.11;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330847    GT:AD:DP:GQ:PL    0/1:7,10:17:99:270,0,246
9    102690883    rs6478987    A    G    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259400    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    102691042    rs10595788    CTTCT    C    721.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=73.3762;IndelType=D;MQ=56.52;MQ0=0;QD=51.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259400    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:764,42,0
9    102713580    rs1997368    G    A    1320.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531035    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1353,102,0
9    102992336    rs2806684    C    T    88.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INVS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466647    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
9    103015184    rs2245216    T    C    566.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INVS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262456    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:599,51,0
9    103054951    rs2787374    T    C    1246.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9699;MQ=58.74;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=S708;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_103054608_103055325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INVS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541287    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1280,99,0
9    103064589    rs41274953    G    A    709.86    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.992;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.44;MQ0=0;MQRankSum=-0.066;QD=17.31;ReadPosRankSum=0.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INVS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262456    GT:AD:DP:GQ:PL    0/1:17,24:41:99:740,0,525
9    103108941    rs2151131    C    G    1992.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374902    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2026,150,0
9    103111764    rs72733375    G    A    126.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374902    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
9    103204577    rs35438121    C    G    1313.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=58.89;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=L119;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_103204188_103204638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374885    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1346,105,0
9    103207654    rs73655549    G    A    660.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.413;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.89;MQ0=0;MQRankSum=0.413;QD=31.45;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398977    GT:AD:DP:GQ:PL    1/1:1,20:21:18.96:693,19,0
9    103235853    rs77849433    G    T    156.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.16;SNPEFF_AMINO_ACID_CHANGE=P9;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_103235395_103236022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374879    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
9    103260966    .    T    TAC    690.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.123;DP=17;FS=0.0;HRun=0;HaplotypeScore=45.8029;IndelType=I;MQ=61.81;MQ0=0;MQRankSum=-0.714;QD=40.59;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334943    GT:AD:DP:GQ:PL    1/1:1,15:17:13.96:732,14,0
9    103271632    rs17814243    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334943    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    103275692    rs1999484    T    A    468.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.559;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9983;MQ=54.56;MQ0=0;MQRankSum=1.936;QD=15.1;ReadPosRankSum=1.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334943    GT:AD:DP:GQ:PL    1/1:2,29:31:51.08:501,51,0
9    103312290    rs2274882    C    A    371.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEFF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334943    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:404,30,0
9    103947696    rs41305455    A    G    175.56    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=17;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.83;QD=10.33;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-35N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374871    GT:AD:DP:GQ:PL    0/1:10,7:17:99:206,0,357
9    104075427    rs2275683    T    C    33.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-35N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463206    GT:AD:DP:GQ:PL    0/1:3,3:6:63.58:64,0,108
9    104079501    rs10125731    C    T    416.36    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.688;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.72;QD=14.36;ReadPosRankSum=-0.807;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-35N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463206    GT:AD:DP:GQ:PL    0/1:15,14:29:99:446,0,532
9    104124664    rs2229594    C    T    661.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259407    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:695,51,0
9    104125056    rs61755096    A    G    758.70    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=1.868;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=58.28;MQ0=0;MQRankSum=-0.464;QD=11.16;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=V304A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104122699_104125297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259407    GT:AD:DP:GQ:PL    0/1:41,27:68:99:789,0,1289
9    104133628    rs1572983    C    T    2351.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.67;MQ0=0;QD=33.59;SNPEFF_AMINO_ACID_CHANGE=R20Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104133221_104133745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259407    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2385,175,0
9    104161942    rs2777331    T    C    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF189;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259395    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
9    104170350    rs1047968    A    G    385.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=26;Dels=0.0;FS=8.463;HRun=0;HaplotypeScore=2.0463;MQ=60.0;MQ0=0;MQRankSum=0.154;QD=14.83;ReadPosRankSum=1.282;SNPEFF_AMINO_ACID_CHANGE=T100;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104170211_104172942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF189;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339664    GT:AD:DP:GQ:PL    0/1:13,13:26:99:416,0,402
9    104171523    rs45455902    A    G    620.14    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.289;DB;DP=51;Dels=0.0;FS=2.483;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.575;QD=12.16;ReadPosRankSum=0.122;SNPEFF_AMINO_ACID_CHANGE=K449;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104170211_104172942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF189;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259395    GT:AD:DP:GQ:PL    0/1:26,25:51:99:650,0,877
9    104171856    rs17772514    C    T    343.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=42;Dels=0.0;FS=1.25;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.974;QD=8.17;ReadPosRankSum=-1.908;SNPEFF_AMINO_ACID_CHANGE=D560;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104170211_104172942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF189;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259395    GT:AD:DP:GQ:PL    0/1:28,14:42:99:373,0,849
9    104171995    rs79645744    G    A    164.05    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=10.94;ReadPosRankSum=1.237;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF189;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259395    GT:AD:DP:GQ:PL    0/1:9,6:15:99:194,0,327
9    104183969    rs41310087    C    T    284.71    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.847;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=17.79;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430164    GT:AD:DP:GQ:PL    0/1:7,9:16:99:315,0,241
9    104186901    rs17186933    T    C    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430164    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
9    104187020    rs682    C    T    195.11    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.415;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=11.48;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430164    GT:AD:DP:GQ:PL    0/1:10,7:17:99:225,0,363
9    104187041    rs75377859    A    G    214.04    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.308;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.142;QD=8.23;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430164    GT:AD:DP:GQ:PL    0/1:15,11:26:99:244,0,552
9    104238142    rs15889    A    C    866.27    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.676;DB;DP=53;Dels=0.0;FS=13.022;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=16.34;ReadPosRankSum=0.695;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374847    GT:AD:DP:GQ:PL    0/1:22,31:53:99:896,0,640
9    104313033    rs117628734    G    A    1088.57    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.258;DB;DP=96;Dels=0.0;FS=1.856;HRun=1;HaplotypeScore=1.6208;MQ=59.76;MQ0=0;MQRankSum=0.116;QD=11.34;ReadPosRankSum=-0.079;SNPEFF_AMINO_ACID_CHANGE=R413K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104312888_104313067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389120    GT:AD:DP:GQ:PL    0/1:55,41:96:99:1119,0,1564
9    104357386    rs62575857    G    C    75.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.77;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,104
9    104385711    rs10989563    C    T    1028.25    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=4.917;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8939;MQ=60.0;MQ0=0;MQRankSum=-1.554;QD=8.5;ReadPosRankSum=1.132;SNPEFF_AMINO_ACID_CHANGE=D835N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104385600_104385715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    0/1:66,55:121:99:1058,0,1913
9    104385712    rs10989564    A    G    3663.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8939;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=N834;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104385600_104385715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3663,301,0
9    104385800    rs10989565    G    A    1771.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1804,138,0
9    104385813    rs10989566    A    G    1265.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1299,99,0
9    104390423    rs1004362    C    T    77.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.86;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    0/1:3,3:6:96.94:107,0,97
9    104390789    rs10819955    C    G    105.93    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.9;MQ0=0;MQRankSum=-0.361;QD=11.77;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,169
9    104432158    rs1323436    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    104432293    rs1323434    C    T    662.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:695,51,0
9    104432873    rs942142    T    G    2424.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=A607;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104432342_104433389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2457,181,0
9    104433034    rs10512285    A    G    1867.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_AMINO_ACID_CHANGE=L554;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104432342_104433389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1900,141,0
9    104433235    rs76198691    C    T    4120.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=59.83;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=G487R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104432342_104433389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,133:133:99:4120,322,0
9    104433347    rs13284303    G    A    1362.45    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.73;DB;DP=91;Dels=0.0;FS=0.933;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.169;QD=14.97;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=I449;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104432342_104433389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    0/1:45,46:91:99:1392,0,1526
9    104433436    rs1885980    T    A    741.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:774,57,0
9    104449063    rs2506354    C    T    391.81    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=35;Dels=0.0;FS=3.18;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=1.428;QD=11.19;ReadPosRankSum=0.958;SNPEFF_AMINO_ACID_CHANGE=G373;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104448878_104449482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    0/1:20,15:35:99:422,0,541
9    104449098    rs10989591    C    T    531.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.471;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.585;QD=14.75;ReadPosRankSum=-0.142;SNPEFF_AMINO_ACID_CHANGE=V362M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104448878_104449482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    0/1:18,18:36:99:561,0,550
9    104449294    rs33945236    G    A    766.63    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.817;DB;DP=66;Dels=0.0;FS=3.5;HRun=0;HaplotypeScore=0.6651;MQ=59.3;MQ0=0;MQRankSum=-2.015;QD=11.62;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=N296;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104448878_104449482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    0/1:37,29:66:99:797,0,1137
9    104499575    rs1337677    T    C    1283.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.85;SNPEFF_AMINO_ACID_CHANGE=P229;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_104499563_104500862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361820    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1316,102,0
9    105057501    rs17743509    C    T    74.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.41;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-402M4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448515    GT:AD:DP:GQ:PL    0/1:3,3:6:93.33:104,0,93
9    105757558    rs10739861    A    G    1489.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374798    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1522,111,0
9    105757756    rs1341205    A    G    1805.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374798    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1838,135,0
9    105763912    rs10820335    T    C    365.59    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.166;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.455;QD=11.79;ReadPosRankSum=0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374798    GT:AD:DP:GQ:PL    0/1:16,15:31:99:396,0,517
9    105765610    rs2066261    T    C    542.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374798    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:575,42,0
9    105767349    rs13293961    G    T    1134.15    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.553;DB;DP=73;Dels=0.0;FS=2.279;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=15.54;ReadPosRankSum=1.481;SNPEFF_AMINO_ACID_CHANGE=D146Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_105767251_105768660;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374798    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1164,0,1263
9    106857908    rs3739736    G    A    242.13    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.365;QD=17.3;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:6,8:14:99:272,0,214
9    106860969    rs10991107    T    C    247.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.563;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.19;QD=9.54;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:13,13:26:99:278,0,461
9    106864570    rs2274725    C    T    366.85    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=17;Dels=0.0;FS=9.971;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=21.58;ReadPosRankSum=-0.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440179    GT:AD:DP:GQ:PL    0/1:5,12:17:99:397,0,159
9    106878318    rs35784229    TCTC    T    198.86    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=24.5165;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=33.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:1,5:6:50.83:238,0,51
9    106885243    rs6479215    C    T    32.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.79;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:62,0,34
9    106885332    rs7350223    A    G    214.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.791;QD=15.34;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:7,7:14:99:245,0,210
9    106885616    rs10991114    A    G    190.80    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=12.72;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:8,7:15:99:221,0,284
9    106887581    rs2417487    A    G    179.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.633;QD=17.92;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:4,6:10:99:209,0,122
9    106888838    rs10605544    ATTAT    A    186.53    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=41.3373;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=0.0;QD=20.73;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:4,5:9:99:226,0,285
9    106894211    rs3780535    A    C    273.30    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.519;DB;DP=26;Dels=0.0;FS=2.079;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.246;QD=10.51;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:15,11:26:99:303,0,471
9    106896809    rs7872034    G    A    347.10    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.159;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=-0.793;QD=7.89;ReadPosRankSum=0.037;SNPEFF_AMINO_ACID_CHANGE=L1074;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_106896696_106896856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286398    GT:AD:DP:GQ:PL    0/1:28,16:44:99:377,0,938
9    106900472    .    GTAATAGTTTAATTAGACTA    G    715.55    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=3.317;DP=25;FS=0.0;HRun=0;HaplotypeScore=356.1277;IndelType=D;MQ=53.17;MQ0=0;MQRankSum=-3.391;QD=28.62;ReadPosRankSum=2.795;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303219    GT:AD:DP:GQ:PL    0/1:20,5:25:99:755,0,3591
9    107266596    rs7049042    T    C    938.94    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.196;DB;DP=76;Dels=0.0;FS=0.908;HRun=0;HaplotypeScore=1.8907;MQ=59.45;MQ0=0;MQRankSum=1.248;QD=12.35;ReadPosRankSum=0.844;SNPEFF_AMINO_ACID_CHANGE=F18S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107266455_107267547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334726    GT:AD:DP:GQ:PL    0/1:41,35:76:99:969,0,1355
9    107266774    rs1949755    C    G    1404.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.611;DB;DP=119;Dels=0.0;FS=0.702;HRun=0;HaplotypeScore=0.9894;MQ=59.69;MQ0=0;MQRankSum=0.796;QD=11.8;ReadPosRankSum=-0.553;SNPEFF_AMINO_ACID_CHANGE=A77;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107266455_107267547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334726    GT:AD:DP:GQ:PL    0/1:64,55:119:99:1434,0,1800
9    107266844    rs1403812    A    G    1062.83    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=75;Dels=0.0;FS=6.977;HRun=1;HaplotypeScore=1.9863;MQ=60.0;MQ0=0;MQRankSum=0.981;QD=14.17;ReadPosRankSum=0.907;SNPEFF_AMINO_ACID_CHANGE=M101V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107266455_107267547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334726    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1093,0,1318
9    107266943    rs1403811    G    A    596.78    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.028;DB;DP=46;Dels=0.0;FS=8.725;HRun=0;HaplotypeScore=1.9997;MQ=60.0;MQ0=0;MQRankSum=0.233;QD=12.97;ReadPosRankSum=-0.432;SNPEFF_AMINO_ACID_CHANGE=V134I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107266455_107267547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334726    GT:AD:DP:GQ:PL    0/1:26,20:46:99:627,0,853
9    107267304    rs7030820    C    T    952.04    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=0.346;QD=12.69;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=T254M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107266455_107267547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334726    GT:AD:DP:GQ:PL    0/1:41,34:75:99:982,0,1242
9    107456933    rs12347076    C    T    3953.12    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.441;DB;DP=223;Dels=0.0;FS=14.035;HRun=1;HaplotypeScore=4.1958;MQ=59.23;MQ0=0;MQRankSum=-0.986;QD=17.73;ReadPosRankSum=-0.071;SNPEFF_AMINO_ACID_CHANGE=L77;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107456660_107457766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318763    GT:AD:DP:GQ:PL    0/1:96,126:223:99:3953,0,3078
9    107457532    rs10761073    C    T    1672.86    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=2.829;DB;DP=91;Dels=0.0;FS=2.84;HRun=1;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=18.38;ReadPosRankSum=0.71;SNPEFF_AMINO_ACID_CHANGE=S277L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107456660_107457766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318763    GT:AD:DP:GQ:PL    0/1:36,55:91:99:1703,0,1040
9    107457725    rs12338899    G    A    582.44    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.254;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.213;QD=14.56;ReadPosRankSum=-0.629;SNPEFF_AMINO_ACID_CHANGE=L341;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107456660_107457766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR13D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318763    GT:AD:DP:GQ:PL    0/1:19,20:39:99:612,0,542
9    107484609    rs10820716    T    C    1029.64    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.364;DB;DP=89;Dels=0.0;FS=5.106;HRun=0;HaplotypeScore=0.9993;MQ=59.68;MQ0=0;MQRankSum=-1.041;QD=11.57;ReadPosRankSum=0.171;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-413C10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338236    GT:AD:DP:GQ:PL    0/1:53,36:89:99:1060,0,1624
9    107484856    rs10820717    A    G    2575.35    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.993;DB;DP=174;DS;Dels=0.0;FS=0.601;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.222;QD=14.8;ReadPosRankSum=0.605;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-413C10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338236    GT:AD:DP:GQ:PL    0/1:88,86:174:99:2605,0,2945
9    107485062    rs62565983    G    A    1356.96    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.054;DB;DP=116;Dels=0.0;FS=12.232;HRun=1;HaplotypeScore=1.6809;MQ=58.96;MQ0=0;MQRankSum=-1.363;QD=11.7;ReadPosRankSum=0.595;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-413C10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338236    GT:AD:DP:GQ:PL    0/1:66,50:116:99:1387,0,2237
9    107485326    rs1891189    T    C    4300.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.87;MQ0=0;QD=30.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-413C10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338236    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4300,340,0
9    107485577    rs7027419    T    C    729.74    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.027;DB;DP=40;Dels=0.0;FS=1.534;HRun=1;HaplotypeScore=0.8941;MQ=58.95;MQ0=0;MQRankSum=0.739;QD=18.24;ReadPosRankSum=0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-413C10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338236    GT:AD:DP:GQ:PL    0/1:17,23:40:99:760,0,528
9    107510145    rs3753024    G    C    111.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=53.95;MQ0=0;QD=27.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPSNAP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374767    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
9    107515214    rs2274870    G    A    1620.91    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=4.545;DB;DP=105;Dels=0.0;FS=1.666;HRun=0;HaplotypeScore=1.3123;MQ=59.78;MQ0=0;MQRankSum=0.684;QD=15.44;ReadPosRankSum=1.875;SNPEFF_AMINO_ACID_CHANGE=R100Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107515187_107515345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPSNAP3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374767    GT:AD:DP:GQ:PL    0/1:49,56:105:99:1651,0,1328
9    107521496    rs2297397    G    A    272.57    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=8.02;ReadPosRankSum=-0.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPSNAP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471001    GT:AD:DP:GQ:PL    0/1:22,12:34:99:303,0,706
9    107521723    rs1046115    T    G    322.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=35.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPSNAP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471001    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
9    107531152    rs10761084    G    C    889.11    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=1.771;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.928;QD=18.52;ReadPosRankSum=1.307;SNPEFF_AMINO_ACID_CHANGE=A94P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107531144_107531302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NIPSNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374762    GT:AD:DP:GQ:PL    0/1:19,29:48:99:919,0,544
9    107531361    rs2472478    T    C    149.50    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.098;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.122;QD=8.79;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NIPSNAP3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374762    GT:AD:DP:GQ:PL    0/1:10,7:17:99:179,0,372
9    107533175    rs3739741    C    G    660.06    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.401;DB;DP=60;Dels=0.0;FS=1.014;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.119;QD=11.0;ReadPosRankSum=-0.877;SNPEFF_AMINO_ACID_CHANGE=A159G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107533130_107533279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NIPSNAP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374762    GT:AD:DP:GQ:PL    0/1:33,27:60:99:690,0,1019
9    107547024    rs2472470    G    A    88.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374736    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
9    107548493    rs2740485    G    T    522.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374736    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:555,42,0
9    107556793    rs71927650    T    TAAA    359.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=18;HaplotypeScore=193.1708;IndelType=I;MQ=50.14;MQ0=0;QD=17.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374736    GT:AD:DP:GQ:PL    1/1:12,6:20:37.48:402,37,0
9    107562804    rs2230808    T    C    1975.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=K1587R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_107562791_107562865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374736    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2008,153,0
9    107564570    rs3831227    CAG    C    259.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=27.4058;IndelType=D;MQ=57.63;MQ0=0;QD=32.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374736    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:301,21,0
9    107566877    rs2777801    C    A    1560.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374736    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1594,120,0
9    107581749    rs2254884    A    C    278.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.351;DB;DP=32;Dels=0.0;FS=4.5;HRun=0;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=-1.259;QD=8.71;ReadPosRankSum=-0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374736    GT:AD:DP:GQ:PL    0/1:20,12:32:99:309,0,723
9    107585023    rs12344156    C    T    237.69    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=13.98;ReadPosRankSum=0.914;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494467    GT:AD:DP:GQ:PL    0/1:9,8:17:99:268,0,260
9    107651212    rs2275544    T    C    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374733    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:124,9,0
9    107651526    rs2275545    A    G    236.64    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=12.45;ReadPosRankSum=1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374733    GT:AD:DP:GQ:PL    0/1:11,8:19:99:267,0,351
9    108147627    rs2771034    G    A    167.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343170    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
9    108152199    rs2771040    G    A    1692.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343170    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1726,126,0
9    108234163    rs11421948    G    GT    86.12    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=23;FS=3.854;HRun=15;HaplotypeScore=153.1563;IndelType=I;MQ=54.98;MQ0=0;MQRankSum=-0.83;QD=3.74;ReadPosRankSum=0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374710    GT:AD:DP:GQ:PL    0/1:12,9:23:99:125,0,107
9    108234207    rs28503319    A    G    428.46    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=43;Dels=0.0;FS=6.084;HRun=0;HaplotypeScore=2.8271;MQ=57.37;MQ0=0;MQRankSum=-0.302;QD=9.96;ReadPosRankSum=-0.78;SNPEFF_AMINO_ACID_CHANGE=N121S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_108234185_108234286;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000481272    GT:AD:DP:GQ:PL    0/1:24,19:43:99:458,0,673
9    108275777    rs10739910    T    C    578.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374707    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:611,48,0
9    108282855    rs7357632    A    G    147.36    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.0;QD=16.37;ReadPosRankSum=1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374707    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,136
9    108288784    rs1327352    G    A    539.87    MQFilter40    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.538;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=36.23;MQ0=5;MQRankSum=-0.311;QD=9.47;ReadPosRankSum=0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374707    GT:AD:DP:GQ:PL    0/1:32,25:57:99:570,0,699
9    108296915    rs7037104    A    G    792.12    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=73;Dels=0.0;FS=4.676;HRun=2;HaplotypeScore=0.9987;MQ=59.37;MQ0=0;MQRankSum=-0.023;QD=10.85;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495708    GT:AD:DP:GQ:PL    0/1:41,32:73:99:822,0,1208
9    108296931    rs7037218    C    T    884.92    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=68;Dels=0.0;FS=1.045;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.471;QD=13.01;ReadPosRankSum=0.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495708    GT:AD:DP:GQ:PL    0/1:36,32:68:99:915,0,973
9    108366499    rs34006675    G    A    559.05    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.52;MQ0=0;MQRankSum=0.409;QD=14.33;ReadPosRankSum=0.292;SNPEFF_AMINO_ACID_CHANGE=G102S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_108366496_108366773;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374705    GT:AD:DP:GQ:PL    0/1:19,20:39:99:589,0,554
9    108456888    rs2271247    A    C    161.19    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.405;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=10.07;ReadPosRankSum=1.794;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_108456825_108457053;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374692    GT:AD:DP:GQ:PL    0/1:9,7:16:99:191,0,240
9    108467607    rs7029124    A    G    31.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
9    108467850    rs2271246    C    G    298.98    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.019;QD=8.79;ReadPosRankSum=-1.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    0/1:22,12:34:99:329,0,703
9    108468129    rs3817141    C    T    341.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434214    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:375,27,0
9    108483741    rs7859253    G    A    232.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:266,21,0
9    108511163    rs10512340    G    A    52.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    108521693    rs10759135    A    G    1891.55    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.148;DB;DP=142;Dels=0.0;FS=3.974;HRun=2;HaplotypeScore=2.4711;MQ=59.7;MQ0=0;MQRankSum=-0.068;QD=13.32;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    0/1:74,68:142:99:1922,0,2409
9    108522175    rs10114077    C    T    6409.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6637;MQ=57.06;MQ0=1;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    1/1:0,177:177:99:6410,479,0
9    108522247    rs73520092    A    G    2119.38    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.669;DB;DP=184;Dels=0.0;FS=6.487;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=1.258;QD=11.52;ReadPosRankSum=-0.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    0/1:106,78:184:99:2149,0,3263
9    108522333    rs10114109    C    A    3096.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    1/1:0,82:82:99:3130,235,0
9    108523029    rs73520094    G    A    141.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=11.8;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    0/1:6,6:12:99:172,0,221
9    108536246    rs35232724    G    C    662.21    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.961;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.788;QD=12.04;ReadPosRankSum=0.459;SNPEFF_AMINO_ACID_CHANGE=C200S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_108536146_108538893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    0/1:34,21:55:99:692,0,1073
9    108536388    rs73522022    A    C    243.97    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=17.43;ReadPosRankSum=2.4;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    0/1:5,9:14:99:274,0,162
9    108536426    rs11330639    AT    A    162.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=5;HaplotypeScore=30.7932;IndelType=D;MQ=60.0;MQ0=0;QD=27.06;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374688    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:204,18,0
9    109690843    rs143646728    C    T    451.28    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.036;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.601;QD=14.56;ReadPosRankSum=0.376;SNPEFF_AMINO_ACID_CHANGE=H1550;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_109686414_109692040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF462;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277225    GT:AD:DP:GQ:PL    0/1:16,15:31:99:481,0,461
9    110047132    rs10733562    G    C    299.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358015    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:332,24,0
9    110047428    .    A    G    110.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358015    GT:AD:DP:GQ:PL    0/1:2,4:6:67.23:141,0,67
9    110081288    rs72738215    T    C    36.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358015    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:68,6,0
9    110081331    rs10113916    T    A    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358015    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    110084261    rs1805330    C    T    232.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.746;DB;DP=21;Dels=0.0;FS=2.141;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.244;QD=11.07;ReadPosRankSum=0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358015    GT:AD:DP:GQ:PL    0/1:12,9:21:99:262,0,399
9    110084328    rs1805329    C    T    1006.61    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.171;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.96;QD=23.97;ReadPosRankSum=-0.93;SNPEFF_AMINO_ACID_CHANGE=A177V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_110084264_110084399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416373    GT:AD:DP:GQ:PL    0/1:10,32:42:99:1037,0,251
9    110086149    rs1805334    G    A    958.37    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=85;Dels=0.0;FS=3.107;HRun=3;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.013;QD=11.27;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358015    GT:AD:DP:GQ:PL    0/1:49,36:85:99:988,0,1440
9    110087029    rs11573722    TC    T    143.81    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=22.9486;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=15.98;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358015    GT:AD:DP:GQ:PL    0/1:4,5:9:99:183,0,150
9    110093970    rs11331572    C    CA    1445.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.43;DB;DP=67;FS=9.46;HRun=12;HaplotypeScore=344.3921;IndelType=I;MQ=59.17;MQ0=0;MQRankSum=-1.348;QD=21.58;ReadPosRankSum=0.459;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_110093950_110094003;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000374678    GT:AD:DP:GQ:PL    1/1:10,56:67:92.29:1488,92,0
9    110249505    rs2236599    C    T    253.16    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.321;DB;DP=27;Dels=0.0;FS=6.362;HRun=1;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=0.716;QD=9.38;ReadPosRankSum=0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KLF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411706    GT:AD:DP:GQ:PL    0/1:16,11:27:99:283,0,469
9    111616818    rs3750466    T    C    474.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374667    GT:AD:DP:GQ:PL    1/1:0,17:17:42.11:507,42,0
9    111617650    rs11543179    G    A    274.45    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=26;Dels=0.0;FS=3.619;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=10.56;ReadPosRankSum=-1.142;SNPEFF_AMINO_ACID_CHANGE=Y187;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111616871_111619239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374667    GT:AD:DP:GQ:PL    0/1:15,11:26:99:304,0,476
9    111618163    rs3750468    G    A    444.82    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.612;DB;DP=29;Dels=0.0;FS=4.295;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=15.34;ReadPosRankSum=1.152;SNPEFF_AMINO_ACID_CHANGE=D16;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111616871_111619239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374667    GT:AD:DP:GQ:PL    0/1:13,16:29:99:475,0,382
9    111618309    rs3750469    T    C    74.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.87;ReadPosRankSum=-0.358;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_111616871_111619239;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374667    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:104,0,69
9    111625913    rs4978370    A    G    835.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:869,63,0
9    111636986    rs2027434    C    T    102.25    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=11.36;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467959    GT:AD:DP:GQ:PL    0/1:5,4:9:99:132,0,182
9    111637304    rs2027433    G    T    568.81    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.159;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.352;QD=12.64;ReadPosRankSum=-2.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467959    GT:AD:DP:GQ:PL    0/1:23,22:45:99:599,0,803
9    111637331    rs1981268    C    A    341.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=10.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467959    GT:AD:DP:GQ:PL    1/1:0,32:32:47.83:375,48,0
9    111637332    .    C    G    343.81    PASS    AC=2;AF=1.00;AN=2;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=11.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467959    GT:AD:DP:GQ:PL    1/1:0,30:30:47.84:377,48,0
9    111640667    rs10435835    C    T    126.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467959    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
9    111641527    rs1416899    G    A    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467959    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
9    111641627    rs2275496    C    T    70.57    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.82;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467959    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,177
9    111644396    rs2275495    G    A    520.39    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.461;QD=16.79;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:13,18:31:99:550,0,382
9    111651407    rs3780507    A    C    59.24    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=5.92;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:7,3:10:89.24:89,0,244
9    111651497    rs3780508    T    C    670.89    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.301;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9606;MQ=58.13;MQ0=0;MQRankSum=-0.903;QD=13.42;ReadPosRankSum=0.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:24,26:50:99:701,0,838
9    111651499    rs3780509    T    C    684.33    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.093;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9606;MQ=58.13;MQ0=0;MQRankSum=-0.851;QD=13.69;ReadPosRankSum=0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:24,26:50:99:714,0,760
9    111653460    rs3737309    A    G    1756.16    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4006;MQ=60.0;MQ0=0;MQRankSum=0.723;QD=17.22;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:40,62:102:99:1786,0,1214
9    111653574    rs1063110    C    G    1211.47    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=93;Dels=0.0;FS=4.233;HRun=0;HaplotypeScore=3.5492;MQ=59.5;MQ0=0;MQRankSum=-0.519;QD=13.03;ReadPosRankSum=-0.404;SNPEFF_AMINO_ACID_CHANGE=L1023;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111653483_111653684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:48,45:93:99:1241,0,1572
9    111658963    rs10816764    T    G    590.66    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=0.773;DB;DP=35;Dels=0.0;FS=5.23;HRun=4;HaplotypeScore=0.7887;MQ=59.34;MQ0=0;MQRankSum=0.479;QD=16.88;ReadPosRankSum=1.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:12,23:35:99:621,0,317
9    111659021    rs2275626    T    C    231.86    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.524;QD=17.84;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:5,8:13:99:262,0,161
9    111659483    rs2230793    T    G    966.90    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=2.578;DB;DP=74;Dels=0.0;FS=7.826;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.889;QD=13.07;ReadPosRankSum=0.679;SNPEFF_AMINO_ACID_CHANGE=I467L;SNPEFF_CODON_CHANGE=Ata/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111659428_111659565;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537196    GT:AD:DP:GQ:PL    0/1:39,35:74:99:997,0,1181
9    111660851    rs2230792    C    T    437.93    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.892;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=9.52;ReadPosRankSum=-0.551;SNPEFF_AMINO_ACID_CHANGE=G416E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111660782_111660861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537196    GT:AD:DP:GQ:PL    0/1:28,18:46:99:468,0,852
9    111661150    rs4978760    G    A    126.30    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=10.53;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:7,5:12:99:156,0,240
9    111661226    rs76493188    G    A    33.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:65,6,0
9    111662288    rs55969525    A    C    97.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=12.18;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:3,5:8:99:127,0,103
9    111662350    rs1341215    G    A    136.10    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=12.37;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:6,5:11:99:166,0,181
9    111662726    rs1341216    C    T    773.83    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=6.035;DB;DP=83;Dels=0.0;FS=18.06;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;MQRankSum=1.699;QD=9.32;ReadPosRankSum=-0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:40,43:83:99:804,0,1090
9    111662727    rs1341217    G    A    754.31    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.002;DB;DP=82;Dels=0.0;FS=18.032;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-0.669;QD=9.2;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:39,43:82:99:784,0,1314
9    111663754    rs2230791    G    A    340.64    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=27;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.364;QD=12.62;ReadPosRankSum=0.655;SNPEFF_AMINO_ACID_CHANGE=T306;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111663705_111663810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537196    GT:AD:DP:GQ:PL    0/1:14,13:27:99:371,0,452
9    111663793    rs10979605    C    T    361.19    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.561;QD=11.65;ReadPosRankSum=-1.008;SNPEFF_AMINO_ACID_CHANGE=T293;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111663705_111663810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537196    GT:AD:DP:GQ:PL    0/1:16,15:31:99:391,0,539
9    111664121    rs2275633    T    C    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
9    111668652    rs838827    C    T    375.41    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=43;Dels=0.0;FS=1.252;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.319;QD=8.73;ReadPosRankSum=-0.471;SNPEFF_AMINO_ACID_CHANGE=R176Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111668583_111668765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537196    GT:AD:DP:GQ:PL    0/1:28,15:43:99:405,0,765
9    111670513    rs2304779    T    C    147.42    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=13.4;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:6,5:11:99:177,0,181
9    111680926    rs35212638    G    GA    162.36    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;FS=0.0;HRun=12;HaplotypeScore=57.5973;IndelType=I;MQ=56.71;MQ0=0;MQRankSum=1.931;QD=14.76;ReadPosRankSum=1.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBKAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374647    GT:AD:DP:GQ:PL    0/1:3,8:11:18.21:201,0,18
9    111712910    rs2780334    G    C    373.27    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.55;DB;DP=37;Dels=0.0;FS=2.944;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=10.09;ReadPosRankSum=-0.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325551    GT:AD:DP:GQ:PL    0/1:23,14:37:99:403,0,773
9    111712924    rs2289481    G    C    408.56    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.707;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=10.48;ReadPosRankSum=0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325551    GT:AD:DP:GQ:PL    0/1:24,15:39:99:439,0,743
9    111727529    rs28361152    T    C    130.13    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=10.01;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325551    GT:AD:DP:GQ:PL    0/1:8,5:13:99:160,0,290
9    111727670    rs7021366    C    G    711.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=55;Dels=0.0;FS=2.259;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.634;QD=12.94;ReadPosRankSum=0.803;SNPEFF_AMINO_ACID_CHANGE=E443Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111727658_111727808;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNAL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325580    GT:AD:DP:GQ:PL    0/1:30,25:55:99:742,0,1057
9    111754288    rs838836    T    C    525.27    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.965;DB;DP=36;Dels=0.0;FS=1.648;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.87;QD=14.59;ReadPosRankSum=0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325551    GT:AD:DP:GQ:PL    0/1:19,17:36:99:555,0,586
9    111755008    rs2297581    C    T    568.59    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=30;Dels=0.0;FS=1.664;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.268;QD=18.95;ReadPosRankSum=1.098;SNPEFF_AMINO_ACID_CHANGE=V141;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111754912_111755099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325551    GT:AD:DP:GQ:PL    0/1:9,21:30:99:599,0,245
9    111782670    rs10816767    G    A    831.43    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=61;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=1.295;QD=13.63;ReadPosRankSum=-0.977;SNPEFF_AMINO_ACID_CHANGE=L902F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111782647_111782712;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:28,33:61:99:861,0,917
9    111798751    rs2256253    C    T    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,102
9    111800234    rs534286    G    A    531.78    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=37;Dels=0.0;FS=4.688;HRun=0;HaplotypeScore=0.9789;MQ=59.5;MQ0=0;MQRankSum=-0.38;QD=14.37;ReadPosRankSum=-1.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:18,19:37:99:562,0,585
9    111812825    rs614253    C    T    560.92    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.982;DB;DP=48;Dels=0.0;FS=2.744;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.464;QD=11.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:29,19:48:99:591,0,842
9    111843055    rs497196    A    T    454.67    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.547;DB;DP=41;Dels=0.0;FS=2.981;HRun=4;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.219;QD=11.09;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:23,17:41:99:485,0,781
9    111868742    rs117323641    C    G    57.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.17;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:4,3:7:87.21:87,0,149
9    111868777    rs2583377    C    T    252.34    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.204;DB;DP=20;Dels=0.0;FS=6.767;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=12.62;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:11,9:20:99:282,0,362
9    111868885    rs2271878    G    A    655.27    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=17.71;ReadPosRankSum=0.047;SNPEFF_AMINO_ACID_CHANGE=S234;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111868788_111868889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:14,23:37:99:685,0,446
9    111881856    rs1051474    T    C    122.22    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=13.58;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=H113R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111881615_111882225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:3,5:9:55.72:152,0,56
9    111881927    rs6825    T    C    66.05    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=6.0;ReadPosRankSum=-0.278;SNPEFF_AMINO_ACID_CHANGE=L89;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111881615_111882225;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223608    GT:AD:DP:GQ:PL    0/1:7,4:11:96.04:96,0,216
9    111899928    rs10759329    A    G    2580.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374581    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2613,196,0
9    111909626    rs57474156    G    A    113.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.68;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374581    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:143,0,27
9    111911775    rs1533641    G    A    163.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374581    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
9    111936732    rs10733569    G    A    977.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=32.59;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1011,75,0
9    111936788    rs10979727    C    T    550.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.275;DB;DP=42;Dels=0.0;FS=1.226;HRun=0;HaplotypeScore=3.5127;MQ=59.45;MQ0=0;MQRankSum=-0.572;QD=13.1;ReadPosRankSum=-0.013;SNPEFF_AMINO_ACID_CHANGE=R601H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111934254_111936903;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:24,18:42:99:580,0,741
9    111938617    rs10816775    T    C    64.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.95;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:95,0,68
9    111938674    rs10816776    C    T    75.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,106
9    111945049    rs3750450    T    G    1139.94    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=0.188;DB;DP=102;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7552;MQ=59.55;MQ0=0;MQRankSum=-0.713;QD=11.18;ReadPosRankSum=0.733;SNPEFF_AMINO_ACID_CHANGE=N501T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111945009_111945077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:55,47:102:99:1170,0,1636
9    111945166    rs10122682    A    G    668.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:702,54,0
9    111947704    rs12377767    C    T    72.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=9.06;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:4,4:8:99:102,0,149
9    111954303    rs149120407    G    A    79.78    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:1,3:4:18.55:110,0,19
9    111954868    rs4978779    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    111956494    rs10979741    C    T    875.69    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=53;Dels=0.0;FS=2.64;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.518;QD=16.52;ReadPosRankSum=-0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:21,32:53:99:906,0,673
9    111956599    rs3750447    G    A    880.03    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=61;Dels=0.0;FS=1.064;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.902;QD=14.43;ReadPosRankSum=1.524;SNPEFF_AMINO_ACID_CHANGE=A393;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_111956500_111956677;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:30,31:61:99:910,0,857
9    111962418    rs7864511    G    C    534.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:567,42,0
9    111962817    rs7040419    A    G    112.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
9    111965909    rs142190955    T    C    719.41    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.309;DB;DP=47;Dels=0.0;FS=1.764;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=15.31;ReadPosRankSum=1.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:23,24:47:99:749,0,803
9    112020668    rs745388    T    C    335.24    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=21;Dels=0.0;FS=5.161;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.713;QD=15.96;ReadPosRankSum=0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:8,13:21:99:365,0,194
9    112020713    rs893917    A    G    219.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:252,21,0
9    112025473    rs1982226    C    A    129.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
9    112041925    rs2014890    A    T    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
9    112042298    rs10979794    A    G    81.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.3;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262536    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:111,0,65
9    112144911    rs7029709    T    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
9    112151349    rs1371787    C    T    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497739    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
9    112170701    rs35463120    T    TAAAC    1188.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=88.8861;IndelType=I;MQ=60.12;MQ0=0;QD=45.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    1/1:7,18:26:57.19:1230,57,0
9    112172477    rs2275699    T    G    1235.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    1/1:0,37:37:96.28:1269,96,0
9    112172674    rs17803052    C    T    434.49    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.07;DB;DP=51;Dels=0.0;FS=4.847;HRun=0;HaplotypeScore=0.8941;MQ=59.09;MQ0=0;MQRankSum=-0.741;QD=8.52;ReadPosRankSum=-1.08;SNPEFF_AMINO_ACID_CHANGE=P269;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_112172509_112172695;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446349    GT:AD:DP:GQ:PL    0/1:35,15:51:99:464,0,1057
9    112182649    rs4077728    T    C    177.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=21;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.933;QD=8.43;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    0/1:14,7:21:99:207,0,416
9    112184972    rs111591001    C    CA    85.63    QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=50;FS=2.793;HRun=14;HaplotypeScore=477.957;IndelType=I;MQ=49.41;MQ0=0;MQRankSum=0.214;QD=1.71;ReadPosRankSum=0.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    0/1:31,13:50:99:125,0,182
9    112216607    rs10979879    G    C    65.66    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=6.57;ReadPosRankSum=-1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    0/1:7,3:10:95.65:96,0,255
9    112219474    rs3793524    C    G    294.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.591;DB;DP=22;Dels=0.0;FS=4.123;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.904;QD=13.41;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=A90P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_112219453_112219495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374541    GT:AD:DP:GQ:PL    0/1:11,11:22:99:325,0,360
9    112225531    rs62576448    G    A    589.28    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.679;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-1.087;QD=14.03;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    0/1:19,23:42:99:619,0,558
9    112225774    rs2274786    T    C    402.14    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.933;DB;DP=31;Dels=0.0;FS=4.041;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.455;QD=12.97;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    0/1:15,16:31:99:432,0,392
9    112225832    rs3808877    C    G    95.94    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.6904;MQ=58.2;MQ0=0;MQRankSum=0.817;QD=7.38;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262539    GT:AD:DP:GQ:PL    0/1:8,5:13:99:126,0,218
9    112629858    rs2769154    A    G    1543.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510514    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1577,117,0
9    112642740    rs9409099    G    A    586.04    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DB;DP=37;Dels=0.0;FS=6.982;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=1.893;QD=15.84;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510514    GT:AD:DP:GQ:PL    0/1:15,22:37:99:616,0,470
9    112687381    rs41278409    G    T    529.63    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=47;Dels=0.0;FS=6.888;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.468;QD=11.27;ReadPosRankSum=0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465091    GT:AD:DP:GQ:PL    0/1:27,20:47:99:560,0,795
9    112694486    rs2277146    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510514    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    112898327    rs1475612    A    G    1159.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259318    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1193,87,0
9    112899361    rs4978872    A    C    437.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.15;DB;DP=32;Dels=0.0;FS=5.632;HRun=0;HaplotypeScore=0.7887;MQ=59.42;MQ0=0;MQRankSum=0.848;QD=13.66;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=K282Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_112898407_112900819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259318    GT:AD:DP:GQ:PL    0/1:16,16:32:99:467,0,538
9    112900199    rs914358    T    C    343.35    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.987;QD=11.08;ReadPosRankSum=-2.39;SNPEFF_AMINO_ACID_CHANGE=L561S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_112898407_112900819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259318    GT:AD:DP:GQ:PL    0/1:14,17:31:99:373,0,393
9    112918531    rs10759392    A    G    775.04    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.837;DB;DP=46;Dels=0.0;FS=1.976;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.379;QD=16.85;ReadPosRankSum=-0.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259318    GT:AD:DP:GQ:PL    0/1:19,27:46:99:805,0,564
9    112918581    rs7862044    T    C    1108    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.197;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.74;MQ0=0;MQRankSum=-0.051;QD=15.39;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259318    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1138,0,1156
9    112963504    rs10120707    A    G    4214.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.0271;MQ=58.91;MQ0=0;QD=32.93;SNPEFF_AMINO_ACID_CHANGE=D148;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_112961841_112963754;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf152;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400613    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4215,307,0
9    113006288    rs2776    T    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487892    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    113006420    rs5843    A    G    746.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.83;MQ0=0;QD=31.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487892    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:779,60,0
9    113007289    rs4135220    T    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374515    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    113091321    .    C    CT    102.91    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DP=8;FS=0.0;HRun=9;HaplotypeScore=18.7174;IndelType=I;MQ=61.34;MQ0=0;MQRankSum=0.322;QD=12.86;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374507    GT:AD:DP:GQ:PL    0/1:3,5:8:54.11:142,0,54
9    113099900    .    G    C    60.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=8.61;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374507    GT:AD:DP:GQ:PL    0/1:4,3:7:90.26:90,0,107
9    113100012    rs7026528    T    G    628.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374507    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:662,48,0
9    113139783    rs2077800    G    A    167.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=13.97;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297826    GT:AD:DP:GQ:PL    0/1:6,6:12:99:198,0,214
9    113141973    rs992885    G    A    96.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=8.05;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297826    GT:AD:DP:GQ:PL    0/1:8,4:12:99:127,0,285
9    113163085    rs34048899    G    A    821.15    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.035;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.11;QD=16.42;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297826    GT:AD:DP:GQ:PL    0/1:24,26:50:99:851,0,784
9    113163490    rs35064081    A    G    44.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.76;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297826    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:74,0,31
9    113166697    rs1410049    T    A    3767.40    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=5.216;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.9025;MQ=59.63;MQ0=0;MQRankSum=1.141;QD=15.13;ReadPosRankSum=-1.309;SNPEFF_AMINO_ACID_CHANGE=V1118;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113166607_113166832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297826    GT:AD:DP:GQ:PL    0/1:122,127:249:99:3767,0,3820
9    113167003    rs12348838    A    C    244.31    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.833;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.176;QD=9.05;ReadPosRankSum=-2.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297826    GT:AD:DP:GQ:PL    0/1:17,10:27:99:274,0,609
9    113169630    rs7046213    T    C    2291.96    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.634;DB;DP=188;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2169;MQ=59.78;MQ0=0;MQRankSum=0.472;QD=12.19;ReadPosRankSum=-2.428;SNPEFF_AMINO_ACID_CHANGE=A2727;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113168440_113171231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:101,87:188:99:2322,0,3329
9    113171262    rs16914997    G    A    1718.58    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.429;DB;DP=140;Dels=0.0;FS=1.636;HRun=1;HaplotypeScore=2.1375;MQ=59.51;MQ0=0;MQRankSum=-0.061;QD=12.28;ReadPosRankSum=-1.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297826    GT:AD:DP:GQ:PL    0/1:76,64:140:99:1749,0,2283
9    113192387    rs11331398    CT    C    204.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.793;DB;DP=28;FS=0.0;HRun=15;HaplotypeScore=149.9089;IndelType=D;MQ=58.26;MQ0=0;MQRankSum=1.793;QD=7.29;ReadPosRankSum=1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    1/1:11,15:28:1.49:242,1,0
9    113192467    rs74328997    T    C    328.33    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=19;Dels=0.0;FS=10.62;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.449;QD=17.28;ReadPosRankSum=0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:9,10:19:99:358,0,313
9    113192655    rs2986671    T    G    921.91    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.571;DB;DP=68;Dels=0.0;FS=3.35;HRun=0;HaplotypeScore=1.367;MQ=59.73;MQ0=0;MQRankSum=-0.172;QD=13.56;ReadPosRankSum=0.638;SNPEFF_AMINO_ACID_CHANGE=E1787A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113192554_113192730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:35,33:68:99:952,0,1101
9    113192785    rs3739447    A    T    338.07    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=24;Dels=0.0;FS=3.388;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.695;QD=14.09;ReadPosRankSum=1.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:11,13:24:99:368,0,353
9    113196429    rs4978927    C    T    86.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
9    113199041    rs10980386    T    C    178.97    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.872;QD=12.78;ReadPosRankSum=0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:8,6:14:99:209,0,286
9    113205574    rs1931320    A    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
9    113205702    rs1931321    A    G    294.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
9    113206141    rs4304395    C    A    187.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=13.39;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    0/1:7,7:14:99:217,0,242
9    113207962    rs7847560    A    C    736.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:770,57,0
9    113209195    rs1889323    T    G    430.54    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.869;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.242;QD=10.5;ReadPosRankSum=-0.353;SNPEFF_AMINO_ACID_CHANGE=K1393Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113209180_113209337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:22,19:41:99:461,0,798
9    113212205    rs2095294    G    A    1158.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    1/1:0,31:31:90.26:1192,90,0
9    113212454    rs10817021    A    T    3571.14    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.596;DB;DP=195;DS;Dels=0.0;FS=6.777;HRun=0;HaplotypeScore=1.8938;MQ=59.41;MQ0=0;MQRankSum=-0.48;QD=18.31;ReadPosRankSum=-1.635;SNPEFF_AMINO_ACID_CHANGE=L1307M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113212339_113212540;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:77,118:195:99:3571,0,2351
9    113213726    rs4421419    A    G    1268.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1302,99,0
9    113218098    rs112071235    T    TAAAGA    1322.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=55.4045;IndelType=I;MQ=50.31;MQ0=0;QD=77.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    1/1:3,14:17:45.15:1365,45,0
9    113219727    rs10980397    C    T    576.51    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=3.64;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.08;QD=19.88;ReadPosRankSum=-0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    0/1:10,19:29:99:607,0,277
9    113220820    rs10980398    C    T    952.02    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=5.147;DB;DP=53;Dels=0.0;FS=4.333;HRun=0;HaplotypeScore=1.9454;MQ=59.21;MQ0=0;MQRankSum=-0.41;QD=17.96;ReadPosRankSum=0.28;SNPEFF_AMINO_ACID_CHANGE=A1146;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113220751_113220842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:22,31:53:99:982,0,541
9    113228096    rs10980400    T    C    723.23    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.009;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.456;QD=13.65;ReadPosRankSum=0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    0/1:29,24:53:99:753,0,974
9    113228098    rs10980401    G    T    946.19    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.115;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.005;QD=16.9;ReadPosRankSum=-0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    0/1:25,31:56:99:976,0,762
9    113233720    rs10980402    G    A    2586.32    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.49;DB;DP=188;Dels=0.0;FS=3.402;HRun=0;HaplotypeScore=2.7073;MQ=59.88;MQ0=0;MQRankSum=-0.301;QD=13.76;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=A951;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113233644_113233877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:97,91:188:99:2616,0,2831
9    113233956    rs7860284    C    T    1224.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=39.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374461    GT:AD:DP:GQ:PL    1/1:0,31:31:93.31:1258,93,0
9    113234168    rs76605517    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374461    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    113234507    rs10817025    T    C    2984.64    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.779;DB;DP=227;DS;Dels=0.0;FS=0.507;HRun=1;HaplotypeScore=5.8517;MQ=59.82;MQ0=0;MQRankSum=-1.018;QD=13.15;ReadPosRankSum=0.776;SNPEFF_AMINO_ACID_CHANGE=K876R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113234439_113234603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374469    GT:AD:DP:GQ:PL    0/1:118,109:227:99:3015,0,3803
9    113234618    rs34710785    CAG    C    913.80    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=4.785;DB;DP=65;FS=3.474;HRun=0;HaplotypeScore=290.7867;IndelType=D;MQ=59.79;MQ0=0;MQRankSum=0.007;QD=14.06;ReadPosRankSum=-1.451;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374461    GT:AD:DP:GQ:PL    0/1:38,27:65:99:953,0,1765
9    113234657    rs17806801    G    A    358.83    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.033;DB;DP=37;Dels=0.0;FS=2.093;HRun=0;HaplotypeScore=0.9469;MQ=59.38;MQ0=0;MQRankSum=-0.198;QD=9.7;ReadPosRankSum=0.132;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374461    GT:AD:DP:GQ:PL    0/1:23,13:37:99:389,0,751
9    113238870    rs10980405    C    G    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
9    113243820    rs3818766    G    A    127.53    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=18.22;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    0/1:2,5:7:62.94:158,0,63
9    113244450    rs4978933    G    A    446.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:479,36,0
9    113245758    rs10817030    C    T    179.44    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.466;QD=16.31;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    0/1:5,6:11:99:209,0,176
9    113261645    rs872666    T    C    250.20    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.485;QD=17.87;ReadPosRankSum=0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    0/1:4,10:14:99:280,0,122
9    113308284    rs2991363    A    T    1125.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    1/1:0,35:35:90.26:1159,90,0
9    113311958    rs1112029    G    A    156.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302728    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:189,15,0
9    113444694    rs4132614    A    G    86.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=14.5;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189978    GT:AD:DP:GQ:PL    0/1:2,4:6:64.94:117,0,65
9    113449271    rs7869057    G    C    417.06    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.396;QD=16.68;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189978    GT:AD:DP:GQ:PL    0/1:11,14:25:99:447,0,367
9    113490776    rs10817087    C    T    308.06    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=28.01;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189978    GT:AD:DP:GQ:PL    0/1:2,9:11:48.77:338,0,49
9    113509778    rs2846448    C    T    216.34    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.324;QD=14.42;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189978    GT:AD:DP:GQ:PL    0/1:7,8:15:99:246,0,239
9    113538347    rs138977349    AT    A    344.24    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=40;FS=0.0;HRun=12;HaplotypeScore=106.7132;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=-0.108;QD=8.61;ReadPosRankSum=1.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189978    GT:AD:DP:GQ:PL    0/1:18,21:40:99:383,0,344
9    113547001    rs572189    A    C    751.57    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=2.435;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.532;QD=18.79;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189978    GT:AD:DP:GQ:PL    0/1:17,23:40:99:782,0,557
9    113547322    rs484010    T    C    2501.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUSK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189978    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2534,211,0
9    113550168    rs2766999    T    C    2795.78    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.774;DB;DP=214;Dels=0.0;FS=11.24;HRun=2;HaplotypeScore=2.8061;MQ=59.89;MQ0=0;MQRankSum=-2.274;QD=13.06;ReadPosRankSum=1.442;SNPEFF_AMINO_ACID_CHANGE=F175;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_113549970_113550381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUSK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374438    GT:AD:DP:GQ:PL    0/1:108,106:214:99:2826,0,3610
9    114090279    rs314452    A    G    773.86    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6436;MQ=59.56;MQ0=0;MQRankSum=1.007;QD=14.88;ReadPosRankSum=-0.385;SNPEFF_AMINO_ACID_CHANGE=A145;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_114089763_114090713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2K2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302681    GT:AD:DP:GQ:PL    0/1:27,25:52:99:804,0,855
9    114124456    rs3837272    GA    G    394.61    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=3.203;DB;DP=76;FS=4.905;HRun=12;HaplotypeScore=273.2636;IndelType=D;MQ=59.52;MQ0=0;MQRankSum=-0.358;QD=5.19;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0368;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465499    GT:AD:DP:GQ:PL    0/1:44,27:76:99:434,0,764
9    114125835    rs2297524    A    G    406.41    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.135;DB;DP=38;Dels=0.0;FS=1.496;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.269;QD=10.7;ReadPosRankSum=-0.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0368;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465499    GT:AD:DP:GQ:PL    0/1:23,15:38:99:436,0,723
9    114128759    rs41312224    C    T    867.59    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=74;Dels=0.0;FS=8.181;HRun=0;HaplotypeScore=0.8667;MQ=59.44;MQ0=0;MQRankSum=-1.84;QD=11.72;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0368;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259335    GT:AD:DP:GQ:PL    0/1:42,32:74:99:898,0,1179
9    114141175    rs7020157    C    T    262.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0368;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259335    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:296,24,0
9    114173564    rs2274899    T    A    749.19    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=2.885;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.475;QD=17.42;ReadPosRankSum=-1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0368;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259335    GT:AD:DP:GQ:PL    0/1:20,23:43:99:779,0,622
9    114173689    rs3818719    G    A    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0368;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259335    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:72,0,29
9    114190159    rs10980895    T    A    72.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=7.27;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0368;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259335    GT:AD:DP:GQ:PL    0/1:6,4:10:99:103,0,210
9    114305576    rs10759501    C    T    114.93    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.731;QD=19.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF483;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355824    GT:AD:DP:GQ:PL    0/1:1,5:6:26.18:145,0,26
9    114429154    .    C    T    352.39    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.553;DP=29;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=53.3;MQ0=1;MQRankSum=0.553;QD=12.15;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=A132;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_114429095_114429226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC25-GNG10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374294    GT:AD:DP:GQ:PL    0/1:15,14:29:99:382,0,510
9    114449219    rs35475871    C    CTT    128.29    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=18;FS=0.0;HRun=16;HaplotypeScore=175.1456;IndelType=I;MQ=52.08;MQ0=0;MQRankSum=-1.369;QD=7.13;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:7,6:18:44.57:167,0,45
9    114454544    rs7869279    T    C    642.26    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.31;DB;DP=56;Dels=0.0;FS=12.836;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=11.47;ReadPosRankSum=-0.238;SNPEFF_AMINO_ACID_CHANGE=E1100G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_114453831_114454791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394777    GT:AD:DP:GQ:PL    0/1:30,26:56:99:672,0,960
9    114454580    rs1475110    A    G    1777.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=I1088T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_114453831_114454791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394777    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1810,141,0
9    114456322    rs113054343    T    TTAAG    565.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=14;FS=2.688;HRun=0;HaplotypeScore=47.4502;IndelType=I;MQ=53.89;MQ0=0;MQRankSum=-0.965;QD=40.38;ReadPosRankSum=-1.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:7,7:14:99:604,0,300
9    114462322    rs6477845    A    G    967.69    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.896;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.65;MQ0=0;MQRankSum=-0.702;QD=14.66;ReadPosRankSum=0.046;SNPEFF_AMINO_ACID_CHANGE=L582P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_114462234_114462327;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394778    GT:AD:DP:GQ:PL    0/1:34,32:66:99:998,0,1116
9    114464487    rs1407390    T    C    921.20    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=57;Dels=0.0;FS=4.916;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=-1.54;QD=16.16;ReadPosRankSum=-0.71;SNPEFF_AMINO_ACID_CHANGE=Y546C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_114464385_114464506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394778    GT:AD:DP:GQ:PL    0/1:28,29:57:99:951,0,908
9    114467703    rs72095277    C    CT    375.62    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.603;DB;DP=31;FS=2.706;HRun=11;HaplotypeScore=101.8834;IndelType=I;MQ=58.86;MQ0=0;MQRankSum=0.643;QD=12.12;ReadPosRankSum=0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:15,15:31:99:415,0,113
9    114469078    rs10125413    T    G    788.73    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.327;DB;DP=53;Dels=0.0;FS=6.284;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.009;QD=14.88;ReadPosRankSum=0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:26,27:53:99:819,0,802
9    114480602    rs2418174    C    A    315.54    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=12.14;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:14,12:26:99:346,0,449
9    114484592    rs1337580    G    A    491.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:525,39,0
9    114484682    rs1337581    T    C    803.48    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=2.584;DB;DP=51;Dels=0.0;FS=1.094;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.353;QD=15.75;ReadPosRankSum=0.861;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:23,28:51:99:833,0,610
9    114489887    rs953536    C    T    695.56    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.734;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7883;MQ=59.54;MQ0=0;MQRankSum=1.196;QD=13.91;ReadPosRankSum=0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:27,23:50:99:726,0,905
9    114490308    rs7470491    T    C    424.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.443;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=15.74;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=H30R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_114489913_114490329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394778    GT:AD:DP:GQ:PL    0/1:9,18:27:99:455,0,264
9    114537978    rs440164    A    T    57.22    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=13;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=4.4;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:9,4:13:87.22:87,0,287
9    114543400    rs2786632    A    G    141.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=14.15;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318737    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,175
9    114548451    rs315711    G    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374283    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
9    114677046    rs10549559    TTTTTG    T    453.98    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=3.923;DB;DP=32;FS=11.083;HRun=0;HaplotypeScore=164.1491;IndelType=D;MQ=58.69;MQ0=0;MQRankSum=1.154;QD=14.19;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374279    GT:AD:DP:GQ:PL    0/1:22,10:32:99:493,0,964
9    114688807    rs72757814    A    G    506.73    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.236;DB;DP=36;Dels=0.0;FS=3.259;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.299;QD=14.08;ReadPosRankSum=-0.507;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490110    GT:AD:DP:GQ:PL    0/1:19,17:36:99:537,0,676
9    114694486    rs7850023    A    G    997.96    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.89;DB;DP=88;Dels=0.0;FS=0.846;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-1.244;QD=11.34;ReadPosRankSum=-1.152;SNPEFF_AMINO_ACID_CHANGE=T287;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_114694450_114694639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGCG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374279    GT:AD:DP:GQ:PL    0/1:45,43:88:99:1028,0,1418
9    114803631    rs2281790    C    A    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.82;ReadPosRankSum=-1.026;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374263    GT:AD:DP:GQ:PL    0/1:2,2:4:63.11:69,0,63
9    114814828    rs7034341    C    T    45.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=5.1;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374263    GT:AD:DP:GQ:PL    0/1:6,3:9:75.93:76,0,208
9    114911324    rs781953    C    A    219.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.507;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=10.99;ReadPosRankSum=1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374263    GT:AD:DP:GQ:PL    0/1:12,8:20:99:250,0,434
9    114911783    rs781954    G    A    121.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.45;MQ0=0;MQRankSum=1.408;QD=8.13;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374263    GT:AD:DP:GQ:PL    0/1:10,5:15:99:152,0,301
9    114919707    rs700105    A    G    124.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=13.78;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374263    GT:AD:DP:GQ:PL    0/1:4,5:9:99:154,0,130
9    114986021    rs34621641    C    CAGAA    692.47    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.976;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=135.1609;IndelType=I;MQ=55.85;MQ0=0;MQRankSum=-0.47;QD=23.88;ReadPosRankSum=-1.317;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334318    GT:AD:DP:GQ:PL    0/1:17,10:29:99:731,0,884
9    114989616    rs6477900    A    G    265.15    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=20.4;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334318    GT:AD:DP:GQ:PL    0/1:4,9:13:99:295,0,131
9    114994305    rs6151125    A    AAAG    789.04    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=2.349;DB;DP=28;FS=2.341;HRun=0;HaplotypeScore=167.2926;IndelType=I;MQ=52.21;MQ0=0;MQRankSum=-2.119;QD=28.18;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334318    GT:AD:DP:GQ:PL    0/1:15,12:28:99:828,0,563
9    115060090    .    T    TA    80.99    QDFilter2    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=0.016;DP=82;FS=3.507;HRun=16;HaplotypeScore=515.1327;IndelType=I;MQ=54.56;MQ0=0;MQRankSum=0.338;QD=0.99;ReadPosRankSum=-0.724;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210227    GT:AD:DP:GQ:PL    0/1:62,10:82:99:120,0,319
9    115060205    rs10981348    C    G    1629.80    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.068;DB;DP=91;Dels=0.0;FS=2.018;HRun=1;HaplotypeScore=0.8667;MQ=56.62;MQ0=0;MQRankSum=-0.061;QD=17.91;ReadPosRankSum=-0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210227    GT:AD:DP:GQ:PL    0/1:35,56:91:99:1660,0,1041
9    115060415    rs7870496    A    G    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210227    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:65,0,32
9    115060682    rs3808881    G    A    200.10    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=15.39;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210227    GT:AD:DP:GQ:PL    0/1:6,7:13:99:230,0,205
9    115092577    rs2418204    G    A    145.46    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=20.78;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210227    GT:AD:DP:GQ:PL    0/1:2,5:7:55.23:175,0,55
9    115092624    rs2900539    T    A    286.63    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=22.05;ReadPosRankSum=-2.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210227    GT:AD:DP:GQ:PL    0/1:4,9:13:99:317,0,127
9    115095743    rs7040447    T    C    209.06    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.97;MQ0=0;MQRankSum=-1.813;QD=9.09;ReadPosRankSum=1.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334318    GT:AD:DP:GQ:PL    0/1:13,10:23:99:239,0,340
9    115142507    rs7867831    A    G    60.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=20.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262542    GT:AD:DP:GQ:PL    1/1:0,3:3:9:93,9,0
9    115171062    rs10733588    T    C    181.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=12.96;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262542    GT:AD:DP:GQ:PL    0/1:7,7:14:99:211,0,248
9    115216222    rs10538330    GATTA    G    639.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=67.2496;IndelType=D;MQ=55.35;MQ0=0;QD=49.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262542    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:681,39,0
9    115249262    rs6477940    T    C    92.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1958;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374244    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
9    115249433    rs7031191    T    C    262.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1958;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337530    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:295,24,0
9    115249614    rs56045355    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1958;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337530    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:73,0,28
9    115450093    rs786970    C    T    118.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476599    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:151,12,0
9    115567015    rs139599865    A    ATG    738.70    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.399;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=95.4996;IndelType=I;MQ=60.62;MQ0=0;MQRankSum=0.604;QD=21.11;ReadPosRankSum=-0.949;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374232    GT:AD:DP:GQ:PL    0/1:19,16:35:99:778,0,637
9    115567184    rs1891402    T    C    806.89    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.72;DB;DP=73;Dels=0.0;FS=6.418;HRun=0;HaplotypeScore=1.9941;MQ=59.37;MQ0=0;MQRankSum=0.017;QD=11.05;ReadPosRankSum=-1.264;SNPEFF_AMINO_ACID_CHANGE=V95;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_115567056_115567247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374232    GT:AD:DP:GQ:PL    0/1:40,33:73:99:837,0,1343
9    115580008    rs10117709    G    C    514.14    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=2.221;DB;DP=50;Dels=0.0;FS=4.108;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-1.219;QD=10.28;ReadPosRankSum=-1.317;SNPEFF_AMINO_ACID_CHANGE=L124;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_115579985_115580095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374232    GT:AD:DP:GQ:PL    0/1:29,21:50:99:544,0,937
9    115593239    rs10739373    G    A    240.78    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=14.16;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374232    GT:AD:DP:GQ:PL    0/1:6,11:17:99:271,0,202
9    115598341    rs7041965    T    G    250.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=14.72;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374232    GT:AD:DP:GQ:PL    0/1:6,10:17:99:280,0,188
9    115598447    rs6477961    C    T    1198.63    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.681;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.38;MQ0=0;MQRankSum=1.224;QD=10.8;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374232    GT:AD:DP:GQ:PL    0/1:62,49:111:99:1229,0,1910
9    115600623    rs10732374    C    T    81.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.4;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374232    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:112,0,30
9    115600848    rs7023478    T    C    1798.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=28.55;SNPEFF_AMINO_ACID_CHANGE=A295;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_115600778_115600977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374232    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1832,144,0
9    115649520    rs3802493    C    T    100.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.75;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC46A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374228    GT:AD:DP:GQ:PL    0/1:2,4:6:63.72:130,0,64
9    115652881    rs3802491    G    T    804.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.688;DB;DP=36;Dels=0.0;FS=1.779;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.252;QD=22.34;ReadPosRankSum=0.285;SNPEFF_AMINO_ACID_CHANGE=A27;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_115651833_115653193;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC46A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374228    GT:AD:DP:GQ:PL    0/1:12,24:36:99:834,0,347
9    115760561    rs10981590    C    T    853.94    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.999;DB;DP=63;Dels=0.0;FS=2.564;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.619;QD=13.55;ReadPosRankSum=0.817;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ZNF883;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427548    GT:AD:DP:GQ:PL    0/1:31,32:63:99:884,0,989
9    115760586    rs75939690    C    T    592.81    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=3.846;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9022;MQ=60.0;MQ0=0;MQRankSum=-1.435;QD=14.82;ReadPosRankSum=0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ZNF883;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427548    GT:AD:DP:GQ:PL    0/1:21,19:40:99:623,0,572
9    115818949    rs2282076    A    T    882.46    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=2.248;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;MQRankSum=0.132;QD=17.3;ReadPosRankSum=0.315;SNPEFF_AMINO_ACID_CHANGE=V7D;SNPEFF_CODON_CHANGE=gTc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_115818837_115818996;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374227    GT:AD:DP:GQ:PL    0/1:21,29:51:99:912,0,591
9    115918144    rs11791765    G    A    281.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC31A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490809    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:314,24,0
9    115918220    rs10817447    C    A    1020.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC31A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490809    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1054,78,0
9    115918306    rs10121117    G    A    3429.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9956;MQ=59.37;MQ0=0;MQRankSum=-1.404;QD=35.72;ReadPosRankSum=1.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446284    GT:AD:DP:GQ:PL    1/1:1,95:96:99:3429,230,0
9    115918552    rs10121164    G    A    2930.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8665;MQ=59.56;MQ0=0;QD=34.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446284    GT:AD:DP:GQ:PL    1/1:0,84:85:99:2964,229,0
9    115918663    rs9696981    T    G    368.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446284    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:402,30,0
9    115919782    rs3934969    T    C    135.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446284    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:168,12,0
9    115919885    rs10122151    G    C    374.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446284    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:407,33,0
9    115920099    rs4344146    T    C    1995.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446284    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2029,147,0
9    115925396    rs1128774    G    A    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
9    115928275    rs3810908    T    C    743.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8295;MQ=58.99;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC31A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259392    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:777,60,0
9    115928566    rs16910202    A    C    156.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC31A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259392    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:189,15,0
9    115931703    rs3810910    G    A    2969.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.53;SNPEFF_AMINO_ACID_CHANGE=L1096;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_115931504_115932222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3002,220,0
9    115934022    rs5900041    A    AACCTGGATT    4727.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=166.6618;IndelType=I;MQ=37.44;MQ0=0;QD=135.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    1/1:3,26:35:99:4728,102,0
9    115934023    .    A    G    72.54    HaplotypeScoreFilter13;MQFilter40    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.582;DP=35;Dels=0.0;FS=2.706;HRun=0;HaplotypeScore=30.9583;MQ=37.44;MQ0=0;MQRankSum=2.004;QD=2.07;ReadPosRankSum=-2.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:30,3:35:28.61:103,0,29
9    115936903    rs3827673    A    G    915.44    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=4.008;DB;DP=63;Dels=0.0;FS=7.076;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=0.199;QD=14.53;ReadPosRankSum=-1.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:32,31:63:99:945,0,1049
9    115940711    rs3810911    A    G    74.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.49;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:2,4:6:50.88:105,0,51
9    115941144    rs10118914    C    T    373.25    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.46;DB;DP=31;Dels=0.0;FS=3.485;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.632;QD=12.04;ReadPosRankSum=-0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:18,13:31:99:403,0,565
9    115944745    rs4143047    T    C    89.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414250    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
9    115946500    rs10817454    A    G    2591.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=32.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414250    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2624,205,0
9    115946892    rs10118429    T    A    2575.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=34.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414250    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2609,202,0
9    115948346    rs7045060    C    A    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414250    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    115950400    rs16912536    G    A    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    115950706    rs10435864    A    C    1782.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_AMINO_ACID_CHANGE=H413Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_115950669_115950771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1815,135,0
9    115952895    rs12684417    T    C    1826.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1859,135,0
9    115959199    rs7866432    G    C    827.38    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.014;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.399;MQ=59.67;MQ0=0;MQRankSum=1.508;QD=14.52;ReadPosRankSum=0.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:29,28:57:99:857,0,960
9    115959520    rs16927031    G    A    99.96    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=4.15;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.271;QD=7.69;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:8,5:13:99:130,0,280
9    115960956    rs7860472    T    C    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
9    115962377    rs55660432    G    A    68.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.57;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:6,3:9:98.13:98,0,227
9    115964664    rs12380325    T    C    45.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.36;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462889    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:75,0,33
9    115965339    rs10568341    GA    G    274.03    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=4.148;DB;DP=45;FS=0.0;HRun=11;HaplotypeScore=170.2143;IndelType=D;MQ=57.64;MQ0=0;MQRankSum=-1.14;QD=6.09;ReadPosRankSum=1.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462889    GT:AD:DP:GQ:PL    0/1:24,19:45:99:313,0,495
9    115968609    rs4281172    C    T    325.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462889    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
9    115968678    rs1133620    T    C    679.86    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=0.31;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.218;QD=21.93;ReadPosRankSum=1.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462889    GT:AD:DP:GQ:PL    0/1:11,20:31:99:710,0,364
9    115968711    rs1133619    G    A    594.53    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=4.314;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.844;QD=16.51;ReadPosRankSum=0.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462889    GT:AD:DP:GQ:PL    0/1:16,20:36:99:625,0,468
9    115968797    rs1133618    C    T    1541.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.104;DB;DP=126;Dels=0.0;FS=5.874;HRun=1;HaplotypeScore=0.6651;MQ=57.96;MQ0=0;MQRankSum=-1.157;QD=12.23;ReadPosRankSum=1.308;SNPEFF_AMINO_ACID_CHANGE=A106T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_115968789_115968858;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:71,55:126:99:1572,0,2089
9    115969056    rs5015972    A    G    114.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=16.31;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462889    GT:AD:DP:GQ:PL    0/1:3,4:7:99:144,0,101
9    115969423    rs4548256    C    T    585.17    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.852;DB;DP=34;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=10.9905;MQ=55.06;MQ0=0;MQRankSum=0.507;QD=17.21;ReadPosRankSum=1.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:14,20:34:99:615,0,468
9    115969433    rs5900043    T    TAGA    2727.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=181.9858;IndelType=I;MQ=55.64;MQ0=0;QD=64.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    1/1:1,39:42:99:2770,123,0
9    115973620    rs4979222    T    G    32.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238256    GT:AD:DP:GQ:PL    0/1:3,2:5:62.06:62,0,107
9    116085602    rs7041572    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341761    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    116091342    rs3810921    T    C    64.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.13;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341761    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:95,0,29
9    116093126    rs66790147    C    A    147.83    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.12;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341761    GT:AD:DP:GQ:PL    0/1:2,5:7:61.39:178,0,61
9    116094480    rs7868271    C    T    96.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=16.06;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341761    GT:AD:DP:GQ:PL    0/1:2,4:6:65.28:126,0,65
9    116116483    rs10981762    A    G    77.20    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=7.02;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374183    GT:AD:DP:GQ:PL    0/1:7,4:11:99:107,0,184
9    116116626    rs10981763    C    G    148.19    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=17;Dels=0.0;FS=6.422;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.025;QD=8.72;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374183    GT:AD:DP:GQ:PL    0/1:10,7:17:99:178,0,285
9    116122672    rs3763667    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    116122954    rs752757    A    G    108.99    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=11;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=9.91;ReadPosRankSum=1.031;SNPEFF_AMINO_ACID_CHANGE=K156;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116122787_116123017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPRY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374183    GT:AD:DP:GQ:PL    0/1:6,5:11:99:139,0,178
9    116124523    rs7041125    C    G    160.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374183    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
9    116130371    rs7854353    T    C    229.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374183    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:263,21,0
9    116130510    rs113186853    ATC    A    726.09    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=5.216;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=141.0237;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=-0.07;QD=16.14;ReadPosRankSum=1.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374183    GT:AD:DP:GQ:PL    0/1:24,21:45:99:765,0,1116
9    116131771    rs3789256    A    G    171.38    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.153;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.15;QD=11.43;ReadPosRankSum=-0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238379    GT:AD:DP:GQ:PL    0/1:7,8:15:99:201,0,242
9    116131869    rs10115141    G    A    1105.54    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=66;Dels=0.0;FS=5.309;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.091;QD=16.75;ReadPosRankSum=1.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238379    GT:AD:DP:GQ:PL    0/1:26,40:66:99:1136,0,666
9    116131873    rs3827661    A    C    660.79    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.841;DB;DP=66;Dels=0.0;FS=5.309;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.261;QD=10.01;ReadPosRankSum=-1.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238379    GT:AD:DP:GQ:PL    0/1:40,26:66:99:691,0,1187
9    116131926    .    C    T    837.37    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.603;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=11.63;ReadPosRankSum=-0.272;SNPEFF_AMINO_ACID_CHANGE=T238I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116131896_116133513;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPRY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374183    GT:AD:DP:GQ:PL    0/1:41,31:72:99:867,0,1272
9    116136198    rs1043836    C    T    4270.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.28;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=G146E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116135699_116136809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238379    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4270,331,0
9    116151191    rs1805313    A    G    164.96    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.901;DB;DP=23;Dels=0.0;FS=2.205;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=7.17;ReadPosRankSum=-1.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445750    GT:AD:DP:GQ:PL    0/1:14,9:23:99:195,0,486
9    116153352    rs2761016    T    C    124.19    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.74;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445750    GT:AD:DP:GQ:PL    0/1:2,5:7:54.84:154,0,55
9    116181419    rs113088354    A    G    631.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DB;DP=45;Dels=0.0;FS=1.28;HRun=1;HaplotypeScore=0.5784;MQ=59.59;MQ0=0;MQRankSum=-1.176;QD=14.03;ReadPosRankSum=0.948;SNPEFF_AMINO_ACID_CHANGE=I107V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116181388_116181445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288462    GT:AD:DP:GQ:PL    0/1:25,20:45:99:661,0,680
9    116183301    rs818714    G    A    143.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.37;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288462    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,163
9    116224374    rs113565749    G    T    1317.70    PASS    AB=0.363;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=80;Dels=0.0;FS=3.211;HRun=0;HaplotypeScore=2.6496;MQ=59.48;MQ0=0;MQRankSum=-0.88;QD=16.47;ReadPosRankSum=-1.859;SNPEFF_AMINO_ACID_CHANGE=G103V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116224301_116224481;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350696    GT:AD:DP:GQ:PL    0/1:29,51:80:99:1348,0,862
9    116346287    rs3810927    C    T    709.39    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.305;DB;DP=45;Dels=0.0;FS=1.223;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.487;QD=15.76;ReadPosRankSum=0.715;SNPEFF_AMINO_ACID_CHANGE=Y186;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116345730_116346707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374134    GT:AD:DP:GQ:PL    0/1:23,22:45:99:739,0,712
9    116356373    rs12350531    G    C    1570.24    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.007;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9138;MQ=59.28;MQ0=0;MQRankSum=1.018;QD=12.27;ReadPosRankSum=-0.466;SNPEFF_AMINO_ACID_CHANGE=L58;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116355766_116356618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000462403    GT:AD:DP:GQ:PL    0/1:68,60:128:99:1600,0,1986
9    116356516    rs12341266    A    G    897.13    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.995;DB;DP=54;Dels=0.0;FS=1.05;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.208;QD=16.61;ReadPosRankSum=-0.746;SNPEFF_AMINO_ACID_CHANGE=Y106C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116355766_116356618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000462403    GT:AD:DP:GQ:PL    0/1:25,29:54:99:927,0,743
9    116356529    rs10817493    C    G    813.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.041;DB;DP=54;Dels=0.0;FS=1.054;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.744;QD=15.07;ReadPosRankSum=0.744;SNPEFF_AMINO_ACID_CHANGE=C110W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116355766_116356618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000462403    GT:AD:DP:GQ:PL    0/1:27,27:54:99:844,0,725
9    116764832    rs11278450    TTTTGCAC    T    860.19    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=4.48;DB;DP=33;FS=3.174;HRun=0;HaplotypeScore=234.0215;IndelType=D;MQ=47.96;MQ0=0;MQRankSum=-4.158;QD=26.07;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288466    GT:AD:DP:GQ:PL    0/1:19,14:33:99:899,0,1448
9    116769515    rs4979321    C    T    145.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=14.57;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288466    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,183
9    116778269    rs4979324    A    G    163.48    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=11.68;ReadPosRankSum=1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288466    GT:AD:DP:GQ:PL    0/1:8,6:14:99:193,0,280
9    116778644    rs1853546    T    G    64.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.85;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288466    GT:AD:DP:GQ:PL    0/1:2,3:5:68.48:94,0,68
9    116791161    rs7030167    T    C    766.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=C319;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116791013_116791252;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374124    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:800,60,0
9    116791233    rs187064298    G    A    694.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.835;DB;DP=48;Dels=0.0;FS=1.134;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-1.454;QD=14.48;ReadPosRankSum=-0.794;SNPEFF_AMINO_ACID_CHANGE=P272;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116791190_116791252;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452710    GT:AD:DP:GQ:PL    0/1:24,24:48:99:725,0,622
9    116794784    rs2116407    A    G    335.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.561;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.854;QD=12.41;ReadPosRankSum=-0.756;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481558    GT:AD:DP:GQ:PL    0/1:15,12:27:99:365,0,509
9    116795061    rs41277651    C    T    1317.96    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=1.807;DB;DP=79;Dels=0.0;FS=5.208;HRun=1;HaplotypeScore=2.7213;MQ=59.42;MQ0=0;MQRankSum=-0.429;QD=16.68;ReadPosRankSum=1.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374124    GT:AD:DP:GQ:PL    0/1:31,48:79:99:1348,0,772
9    116810204    rs12378906    G    A    995.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.217;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-0.007;QD=15.55;ReadPosRankSum=-0.392;SNPEFF_AMINO_ACID_CHANGE=Q333;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116810173_116810274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288466    GT:AD:DP:GQ:PL    0/1:32,32:64:99:1025,0,953
9    116812084    rs7856141    C    T    1318.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.657;DB;DP=84;Dels=0.0;FS=4.371;HRun=0;HaplotypeScore=3.547;MQ=60.0;MQ0=0;MQRankSum=-1.815;QD=15.7;ReadPosRankSum=1.089;SNPEFF_AMINO_ACID_CHANGE=N741;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116810931_116818871;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF618;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288466    GT:AD:DP:GQ:PL    0/1:36,48:84:99:1349,0,1023
9    116822610    rs2269456    A    G    148.57    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5616;MQ=58.55;MQ0=0;MQRankSum=-0.813;QD=9.29;ReadPosRankSum=-1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466610    GT:AD:DP:GQ:PL    0/1:10,6:16:99:179,0,288
9    116823991    rs4978565    A    C    213.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265132    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:246,21,0
9    116838743    rs2567700    C    A    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265132    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
9    116840204    rs2251680    A    G    563.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265132    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:596,45,0
9    116854361    rs41277735    G    C    72.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.9789;MQ=56.04;MQ0=0;MQRankSum=-0.406;QD=12.16;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473174    GT:AD:DP:GQ:PL    0/1:3,3:6:80.07:103,0,80
9    116857165    rs7853169    T    C    129.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479670    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
9    116857234    rs6478061    G    C    70.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.75;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479670    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,104
9    116857656    rs7036734    T    C    349.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479670    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:383,30,0
9    116858625    rs6478062    T    G    120.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491059    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
9    116859427    rs141480412    CATGCCT    C    320.59    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=50.1214;IndelType=D;MQ=48.94;MQ0=0;MQRankSum=-0.742;QD=45.8;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491059    GT:AD:DP:GQ:PL    0/1:1,6:7:91.87:360,0,92
9    116859769    rs3810929    T    C    1044.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.03;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259410    GT:AD:DP:GQ:PL    1/1:0,32:32:84.25:1077,84,0
9    116861763    rs1886128    G    A    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259410    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
9    116930100    rs2567707    G    A    757.55    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.468;DB;DP=65;Dels=0.0;FS=0.983;HRun=0;HaplotypeScore=0.7887;MQ=59.71;MQ0=0;MQRankSum=0.495;QD=11.65;ReadPosRankSum=0.125;SNPEFF_AMINO_ACID_CHANGE=V36I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116929969_116931743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374106    GT:AD:DP:GQ:PL    0/1:36,29:65:99:788,0,966
9    116930194    rs2567706    A    G    398.61    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.179;DB;DP=39;Dels=0.0;FS=7.557;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=9.97;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=Q120R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116929969_116931743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:23,16:39:99:429,0,769
9    116931099    rs2241671    G    A    2069.09    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.371;DB;DP=161;Dels=0.0;FS=1.994;HRun=0;HaplotypeScore=7.7104;MQ=59.01;MQ0=0;MQRankSum=-1.207;QD=12.85;ReadPosRankSum=0.883;SNPEFF_AMINO_ACID_CHANGE=A369T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116929969_116931743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374106    GT:AD:DP:GQ:PL    0/1:85,74:161:99:2099,0,2346
9    116931445    rs2808770    T    C    1329.15    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.802;DB;DP=94;Dels=0.0;FS=1.799;HRun=0;HaplotypeScore=2.4063;MQ=59.75;MQ0=0;MQRankSum=0.35;QD=14.14;ReadPosRankSum=1.172;SNPEFF_AMINO_ACID_CHANGE=I484T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116929969_116931743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374106    GT:AD:DP:GQ:PL    0/1:48,46:94:99:1359,0,1527
9    116931666    rs2567705    A    T    215.72    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.045;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.317;QD=7.19;ReadPosRankSum=1.358;SNPEFF_AMINO_ACID_CHANGE=I558F;SNPEFF_CODON_CHANGE=Atc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116929969_116931743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374106    GT:AD:DP:GQ:PL    0/1:21,9:30:99:246,0,717
9    116931737    rs2808771    C    T    74.80    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=20;Dels=0.0;FS=6.107;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.15;QD=3.74;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=G581;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_116929969_116931743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374106    GT:AD:DP:GQ:PL    0/1:16,4:20:99:105,0,487
9    116945454    rs10759688    A    C    286.99    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.782;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5983;MQ=58.95;MQ0=0;MQRankSum=-0.739;QD=13.04;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:11,10:22:99:317,0,391
9    116945547    rs10739406    T    C    76.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=12.81;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:2,4:6:28.61:107,0,29
9    116958144    rs10982097    C    T    64.66    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.47;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:7,3:10:94.65:95,0,259
9    116958216    rs2567711    C    T    356.94    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=34;Dels=0.0;FS=1.545;HRun=0;HaplotypeScore=0.8321;MQ=58.63;MQ0=0;MQRankSum=0.092;QD=10.5;ReadPosRankSum=1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:21,13:34:99:387,0,635
9    116967263    rs2567719    T    G    92.34    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=11.54;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:3,5:8:99:122,0,106
9    116967952    rs2567720    T    C    289.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
9    116973361    rs10982109    C    T    406.03    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=3.139;DB;DP=22;Dels=0.0;FS=6.193;HRun=0;HaplotypeScore=0.8941;MQ=57.87;MQ0=0;MQRankSum=0.735;QD=18.46;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:9,13:22:99:436,0,218
9    116981898    rs6478070    T    G    82.44    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374106    GT:AD:DP:GQ:PL    0/1:1,5:6:29.19:112,0,29
9    116997994    rs2015408    T    C    381.26    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.317;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.611;QD=10.59;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:18,17:36:99:411,0,665
9    117002787    rs41305461    T    A    508.66    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=43;Dels=0.0;FS=3.333;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.346;QD=11.83;ReadPosRankSum=-1.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:23,20:43:99:539,0,597
9    117008025    rs41278645    A    G    142.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.866;QD=12.95;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:4,6:11:96.18:172,0,96
9    117026581    rs4978576    C    G    177.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:210,18,0
9    117027068    rs1623718    C    T    490.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=37.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:524,39,0
9    117028968    rs35380914    C    T    130.59    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.06;DB;DP=17;Dels=0.0;FS=2.884;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.955;QD=7.68;ReadPosRankSum=-0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:11,6:17:99:161,0,367
9    117033022    rs4143245    T    C    272.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.575;QD=9.74;ReadPosRankSum=-0.301;SNPEFF_AMINO_ACID_CHANGE=L1190;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117033008_117033061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    0/1:16,12:28:99:303,0,440
9    117033096    rs2636866    C    T    525.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:558,42,0
9    117044751    rs2787330    T    C    329.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=Y1262;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117044737_117044844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:363,27,0
9    117050998    rs10982134    G    A    497.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_AMINO_ACID_CHANGE=R1354Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117050982_117051035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:530,39,0
9    117051586    rs72762675    C    G    180.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356083    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:213,18,0
9    117064306    rs1546049    T    C    864.55    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.715;DB;DP=79;Dels=0.0;FS=4.758;HRun=1;HaplotypeScore=1.4942;MQ=59.71;MQ0=0;MQRankSum=0.868;QD=10.94;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494780    GT:AD:DP:GQ:PL    0/1:47,32:79:99:895,0,1452
9    117064405    rs10817586    C    G    1774.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.19;MQ0=0;MQRankSum=-1.609;QD=31.13;ReadPosRankSum=0.433;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494780    GT:AD:DP:GQ:PL    1/1:1,56:57:98.76:1807,99,0
9    117064559    rs1249753    C    A    130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494780    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
9    117066823    rs10817590    C    T    1382.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494780    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1416,108,0
9    117072656    rs1000744    C    A    210.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490831    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
9    117073006    rs1249756    C    T    932.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357257    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:966,72,0
9    117085595    .    C    A    87.88    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.47;MQ0=0;MQRankSum=-3.308;QD=5.49;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=S61Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117085377_117086085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538816    GT:AD:DP:GQ:PL    0/1:10,6:16:99:118,0,336
9    117085635    rs74594458    T    C    82.59    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.92;MQ0=0;MQRankSum=1.835;QD=6.88;ReadPosRankSum=-0.929;SNPEFF_AMINO_ACID_CHANGE=P74;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117085377_117086085;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538816    GT:AD:DP:GQ:PL    0/1:8,4:12:99:113,0,222
9    117086226    rs1111796    A    G    165.57    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.242;DB;DP=23;Dels=0.0;FS=7.384;HRun=2;HaplotypeScore=1.6208;MQ=52.23;MQ0=0;MQRankSum=1.399;QD=7.2;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259396    GT:AD:DP:GQ:PL    0/1:15,8:23:99:196,0,505
9    117093729    rs10759691    A    G    231.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=33.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223791    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:264,21,0
9    117094073    rs113974644    T    C    754.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.89;MQ0=0;QD=25.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223791    GT:AD:DP:GQ:PL    1/1:0,30:30:72.14:787,72,0
9    117103973    rs2250242    A    G    203.11    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.203;QD=11.95;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=S1222P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117103813_117104005;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKNA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374075    GT:AD:DP:GQ:PL    0/1:9,8:17:99:233,0,244
9    117106190    rs3748179    C    T    146.55    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.32;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491133    GT:AD:DP:GQ:PL    0/1:3,5:8:97.11:177,0,97
9    117166034    rs10739410    T    C    189.04    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=15.75;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:5,7:12:99:219,0,162
9    117166206    rs2274158    G    T    810.86    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=4.373;DB;DP=64;Dels=0.0;FS=3.548;HRun=2;HaplotypeScore=1.8857;MQ=58.91;MQ0=0;MQRankSum=-0.607;QD=12.67;ReadPosRankSum=0.973;SNPEFF_AMINO_ACID_CHANGE=N413K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117166176_117166357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:35,29:64:99:841,0,969
9    117166246    rs2274159    A    G    741.40    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.43;DB;DP=66;Dels=0.0;FS=3.511;HRun=0;HaplotypeScore=3.1188;MQ=59.3;MQ0=0;MQRankSum=0.697;QD=11.23;ReadPosRankSum=-0.725;SNPEFF_AMINO_ACID_CHANGE=V400A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117166176_117166357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:34,32:66:99:771,0,928
9    117166338    rs6478078    G    C    1413.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=37.21;SNPEFF_AMINO_ACID_CHANGE=H369Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117166176_117166357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1447,108,0
9    117168551    rs10982200    C    A    330.58    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.883;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-1.244;QD=15.03;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:9,13:22:99:361,0,303
9    117169033    rs942519    A    G    226.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.683;QD=14.16;ReadPosRankSum=-1.313;SNPEFF_AMINO_ACID_CHANGE=M230T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117168635_117169172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:8,8:16:99:257,0,267
9    117170241    rs12339210    G    C    83.50    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=7.59;ReadPosRankSum=-2.037;SNPEFF_AMINO_ACID_CHANGE=P179A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117170227_117170298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:7,4:11:99:113,0,204
9    117170310    rs2274160    C    T    112.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.04;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:3,4:7:93.42:142,0,93
9    117186463    rs4979385    T    C    170.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.741;QD=17.09;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:4,6:10:99:201,0,135
9    117186592    rs4979386    T    A    623.97    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.442;DB;DP=45;Dels=0.0;FS=4.388;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.207;QD=13.87;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:21,23:45:99:654,0,646
9    117186677    rs4979387    A    G    294.08    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.275;DB;DP=39;Dels=0.0;FS=3.305;HRun=0;HaplotypeScore=1.8606;MQ=59.41;MQ0=0;MQRankSum=0.824;QD=7.54;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=G100;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117186614_117186826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374059    GT:AD:DP:GQ:PL    0/1:26,11:39:99:324,0,806
9    117186712    rs4978584    C    T    235.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.319;DB;DP=30;Dels=0.0;FS=7.204;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.983;QD=7.85;ReadPosRankSum=-1.99;SNPEFF_AMINO_ACID_CHANGE=A440T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117186614_117186826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000362057    GT:AD:DP:GQ:PL    0/1:18,12:30:99:266,0,445
9    117188566    rs10817610    C    T    1621.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=R364H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117188491_117188693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000362057    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1654,123,0
9    117188714    rs2274163    T    C    626.37    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=37;Dels=0.0;FS=3.231;HRun=0;HaplotypeScore=1.7608;MQ=59.75;MQ0=0;MQRankSum=0.659;QD=16.93;ReadPosRankSum=0.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265134    GT:AD:DP:GQ:PL    0/1:16,21:37:99:656,0,476
9    117266337    rs35122928    TA    T    116.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=15;HaplotypeScore=64.9234;IndelType=D;MQ=60.86;MQ0=0;QD=10.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DFNB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362057    GT:AD:DP:GQ:PL    1/1:1,10:11:25.61:159,26,0
9    117389478    rs1536737    C    G    124.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288502    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
9    117390300    rs7031094    C    A    270.93    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=22;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=1.9992;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=12.32;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288502    GT:AD:DP:GQ:PL    0/1:10,12:22:99:301,0,359
9    117390677    rs999009    C    A    79.27    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.85;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471206    GT:AD:DP:GQ:PL    0/1:1,4:5:30.61:109,0,31
9    117399263    rs41278669    C    T    328.68    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.572;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.957;QD=9.13;ReadPosRankSum=-0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288502    GT:AD:DP:GQ:PL    0/1:21,15:36:99:359,0,666
9    117405189    rs7027937    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288502    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:72,0,69
9    117405645    rs41278673    T    G    82.78    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.457;DB;DP=16;Dels=0.0;FS=5.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.154;QD=5.17;ReadPosRankSum=0.718;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482552    GT:AD:DP:GQ:PL    0/1:11,5:16:99:113,0,403
9    117552885    rs3810936    T    C    1147.57    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=66;Dels=0.0;FS=1.504;HRun=0;HaplotypeScore=0.6651;MQ=59.3;MQ0=0;MQRankSum=-1.088;QD=17.39;ReadPosRankSum=1.264;SNPEFF_AMINO_ACID_CHANGE=V124;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117551600_117554388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374044    GT:AD:DP:GQ:PL    0/1:27,39:66:99:1178,0,825
9    117553249    rs4246905    T    C    953.78    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=65;Dels=0.0;FS=5.153;HRun=0;HaplotypeScore=2.8295;MQ=59.29;MQ0=0;MQRankSum=1.391;QD=14.67;ReadPosRankSum=0.327;SNPEFF_AMINO_ACID_CHANGE=H3R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117551600_117554388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374044    GT:AD:DP:GQ:PL    0/1:28,37:65:99:984,0,794
9    117568049    rs7030574    C    A    89.40    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.566;QD=5.26;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374045    GT:AD:DP:GQ:PL    0/1:12,5:17:99:119,0,406
9    117666678    rs3181367    G    A    348.05    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.99;MQ0=0;MQRankSum=-0.708;QD=15.13;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TNFSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223795    GT:AD:DP:GQ:PL    0/1:11,12:23:99:378,0,387
9    117668142    rs3181195    C    T    1141.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9985;MQ=60.0;MQ0=0;MQRankSum=-1.952;QD=11.41;ReadPosRankSum=-0.53;SNPEFF_AMINO_ACID_CHANGE=R92;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117668108_117668179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TNFSF8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223795    GT:AD:DP:GQ:PL    0/1:60,40:100:99:1171,0,1816
9    117692257    rs10626871    T    TAGAG    921.19    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.856;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=142.1431;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=-0.375;QD=41.87;ReadPosRankSum=2.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TNFSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223795    GT:AD:DP:GQ:PL    0/1:8,12:22:99:960,0,229
9    117692261    rs34855182    G    T    74.09    HaplotypeScoreFilter13    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.8352;MQ=59.41;MQ0=0;MQRankSum=-1.259;QD=3.22;ReadPosRankSum=-2.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TNFSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223795    GT:AD:DP:GQ:PL    0/1:15,8:23:25.76:104,0,26
9    117783551    rs35292274    TA    T    126.82    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.154;DB;DP=28;FS=2.43;HRun=12;HaplotypeScore=92.7064;IndelType=D;MQ=55.65;MQ0=0;MQRankSum=1.813;QD=4.37;ReadPosRankSum=1.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:20,9:28:99:166,0,290
9    117792426    rs13286441    G    T    925.37    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.709;DB;DP=64;Dels=0.0;FS=3.3;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-1.284;QD=14.46;ReadPosRankSum=0.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460345    GT:AD:DP:GQ:PL    0/1:30,34:64:99:955,0,956
9    117792583    rs13321    C    G    5473.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=E1371Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117792533_117792684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345230    GT:AD:DP:GQ:PL    1/1:0,157:157:99:5473,403,0
9    117794154    rs11788513    G    A    75.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.1;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476680    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:106,0,70
9    117797359    rs3215885    A    AT    531.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=10;HaplotypeScore=45.8688;IndelType=I;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476680    GT:AD:DP:GQ:PL    1/1:0,18:18:54.13:574,54,0
9    117797597    rs12347433    T    C    699.01    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=48;Dels=0.0;FS=1.514;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.013;QD=14.56;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=R1254;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117797483_117797613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345230    GT:AD:DP:GQ:PL    0/1:23,25:48:99:729,0,647
9    117800417    rs2274751    T    A    883.23    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.089;DB;DP=52;Dels=0.0;FS=1.644;HRun=0;HaplotypeScore=3.9244;MQ=59.56;MQ0=0;MQRankSum=0.921;QD=16.99;ReadPosRankSum=1.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:21,31:52:99:913,0,635
9    117803185    rs35141770    A    AACAC    1242.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=88.3609;IndelType=I;MQ=56.49;MQ0=1;QD=49.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    1/1:8,16:24:54.19:1285,54,0
9    117804523    rs62638694    C    T    1002.41    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.837;DB;DP=83;Dels=0.0;FS=7.776;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=1.345;QD=12.08;ReadPosRankSum=1.488;SNPEFF_AMINO_ACID_CHANGE=R1104;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117804498_117804620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345230    GT:AD:DP:GQ:PL    0/1:48,35:83:99:1032,0,1418
9    117808785    rs2104772    T    A    3990.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9258;MQ=59.79;MQ0=0;QD=35.95;SNPEFF_AMINO_ACID_CHANGE=I1131L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117808689_117808961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346706    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3991,295,0
9    117819389    rs12348090    A    T    50.83    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.909;DB;DP=21;Dels=0.0;FS=10.227;HRun=0;HaplotypeScore=0.0;MQ=55.45;MQ0=0;MQRankSum=-1.909;QD=2.42;ReadPosRankSum=0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:14,5:21:80.82:81,0,340
9    117819748    rs3833491    GTTAA    G    1730.42    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=6.767;DB;DP=83;FS=0.0;HRun=0;HaplotypeScore=380.2942;IndelType=D;MQ=58.35;MQ0=0;MQRankSum=-0.817;QD=20.85;ReadPosRankSum=-0.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:47,36:83:99:1769,0,2917
9    117836188    rs2210108    A    G    414.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:447,33,0
9    117838093    rs7026596    C    T    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
9    117838514    .    T    C    282.16    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DP=16;Dels=0.0;FS=6.166;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=17.63;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:5,11:16:99:312,0,164
9    117838624    rs2274835    C    G    327    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.725;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.335;QD=10.9;ReadPosRankSum=-0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:17,13:30:99:357,0,601
9    117838696    rs77983149    G    T    247.22    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.315;DB;DP=62;Dels=0.0;FS=27.386;HRun=2;HaplotypeScore=6.8332;MQ=48.97;MQ0=0;MQRankSum=-4.423;QD=3.99;ReadPosRankSum=0.847;SNPEFF_AMINO_ACID_CHANGE=Q945K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117838669_117838854;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:30,32:62:99:277,0,774
9    117840061    rs2988577    A    G    196.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:230,18,0
9    117844239    rs2989519    G    A    417.50    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=44;Dels=0.0;FS=1.333;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.534;QD=9.49;ReadPosRankSum=-0.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:27,17:44:99:447,0,875
9    117844771    rs944227    G    C    209.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:242,18,0
9    117846450    rs1755639    A    G    1089.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    1/1:0,31:31:87.26:1122,87,0
9    117846580    rs1061494    T    C    393.10    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=26;Dels=0.0;FS=7.203;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.157;QD=15.12;ReadPosRankSum=1.209;SNPEFF_AMINO_ACID_CHANGE=Q680R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117846488_117846751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:12,14:26:99:423,0,369
9    117848112    rs1617917    A    T    88.83    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=14;Dels=0.0;FS=2.363;HRun=2;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-2.4;QD=6.34;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534839    GT:AD:DP:GQ:PL    0/1:9,5:14:99:119,0,259
9    117848201    rs3827815    T    C    131.52    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=6.92;ReadPosRankSum=-1.445;SNPEFF_AMINO_ACID_CHANGE=Q603;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117848143_117849552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:11,8:19:99:162,0,317
9    117848394    rs1757095    T    C    1266.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=30.88;SNPEFF_AMINO_ACID_CHANGE=Q539R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117848143_117849552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1299,105,0
9    117849170    .    G    T    96.81    FSFilter60;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.125;DP=69;Dels=0.0;FS=87.857;HRun=2;HaplotypeScore=0.9332;MQ=56.35;MQ0=0;MQRankSum=-0.752;QD=1.4;ReadPosRankSum=0.12;SNPEFF_AMINO_ACID_CHANGE=N280K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117848143_117849552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:46,23:69:99:127,0,1372
9    117849314    rs2992147    T    C    740.08    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=67;Dels=0.0;FS=10.948;HRun=0;HaplotypeScore=0.9989;MQ=58.26;MQ0=0;MQRankSum=-0.451;QD=11.05;ReadPosRankSum=-0.985;SNPEFF_AMINO_ACID_CHANGE=V232;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117848143_117849552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:39,28:67:99:770,0,1243
9    117849641    rs1757096    T    G    139.17    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.256;QD=10.71;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534839    GT:AD:DP:GQ:PL    0/1:8,5:13:99:169,0,268
9    117849666    rs10982518    C    G    110.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=18.44;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534839    GT:AD:DP:GQ:PL    0/1:2,4:6:65.93:141,0,66
9    117853022    rs944510    C    T    2411.28    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.43;DB;DP=163;Dels=0.0;FS=5.824;HRun=0;HaplotypeScore=1.7262;MQ=59.72;MQ0=0;MQRankSum=1.009;QD=14.79;ReadPosRankSum=-1.579;SNPEFF_AMINO_ACID_CHANGE=V92;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_117852841_117853433;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340094    GT:AD:DP:GQ:PL    0/1:78,85:163:99:2441,0,2255
9    118163563    rs2269700    C    T    1114.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=A60V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_118163472_118163589;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374016    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1148,84,0
9    118164574    rs3750505    G    A    102.98    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=12.87;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374016    GT:AD:DP:GQ:PL    0/1:3,5:8:99:133,0,100
9    118949998    rs12375498    C    T    910.71    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=1.744;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.867;QD=17.51;ReadPosRankSum=0.01;SNPEFF_AMINO_ACID_CHANGE=C327;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_118949433_118950495;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328252    GT:AD:DP:GQ:PL    0/1:19,32:52:99:941,0,543
9    118969686    rs11268296    T    TTATTTAAATAG    1417.21    PASS    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=277.1262;IndelType=I;MQ=53.75;MQ0=0;MQRankSum=-3.829;QD=39.37;ReadPosRankSum=-0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328252    GT:AD:DP:GQ:PL    0/1:29,5:36:99:1456,0,2232
9    118989926    rs13290387    G    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328252    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    119097495    rs35874577    G    A    74.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.66;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443904    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,142
9    119106881    rs7020782    C    A    1302.82    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.99;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=14.48;ReadPosRankSum=0.916;SNPEFF_AMINO_ACID_CHANGE=S1224Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_119106822_119106990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328252    GT:AD:DP:GQ:PL    0/1:40,50:90:99:1333,0,1145
9    119129826    rs7020762    A    G    122.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328252    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:156,15,0
9    119130113    rs3827669    T    C    32.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.55;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328252    GT:AD:DP:GQ:PL    0/1:3,2:5:62.75:63,0,109
9    119155568    rs10120005    A    G    32.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.38;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445861    GT:AD:DP:GQ:PL    0/1:4,2:6:62.28:62,0,149
9    119158814    rs10759836    T    C    2114.86    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.605;DB;DP=169;Dels=0.0;FS=0.578;HRun=1;HaplotypeScore=2.9153;MQ=60.0;MQ0=0;MQRankSum=1.136;QD=12.51;ReadPosRankSum=0.238;SNPEFF_AMINO_ACID_CHANGE=D1601;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_119158788_119164601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328252    GT:AD:DP:GQ:PL    0/1:94,74:169:99:2145,0,2878
9    119187839    rs7518    C    T    317.66    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.314;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.276;QD=8.59;ReadPosRankSum=0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361477    GT:AD:DP:GQ:PL    0/1:25,12:37:99:348,0,814
9    119199485    rs7034542    T    A    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288520    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    119199820    rs7018569    C    G    954.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=28.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288520    GT:AD:DP:GQ:PL    1/1:0,33:33:78.24:987,78,0
9    119204960    rs1321923    C    A    158.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288520    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
9    119382768    rs2295741    A    G    1976.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=59.65;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288520    GT:AD:DP:GQ:PL    1/1:0,65:66:99:2010,160,0
9    119382930    rs4837682    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288520    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
9    119448979    rs10983304    C    T    1097.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.839;QD=34.3;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=E36K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_119448976_119449494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288520    GT:AD:DP:GQ:PL    1/1:1,30:32:53.31:1130,53,0
9    119461275    rs1661300    G    A    4615.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.86;MQ0=0;QD=34.97;SNPEFF_AMINO_ACID_CHANGE=V418;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_119459935_119463579;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373983    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4615,349,0
9    119462112    rs3019    C    T    438.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411410    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:472,36,0
9    119491277    rs72765708    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_AMINO_ACID_CHANGE=A597T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_119491271_119491375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373986    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    119495697    rs7863560    T    C    2718.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=59.76;MQ0=0;QD=28.62;SNPEFF_AMINO_ACID_CHANGE=P557;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_119495678_119495802;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373986    GT:AD:DP:GQ:PL    1/1:0,95:95:99:2752,223,0
9    119582872    rs3765537    T    G    2956.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.75;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2990,235,0
9    119770480    rs3761845    C    T    841.07    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=2.39;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.644;QD=16.82;ReadPosRankSum=-0.582;SNPEFF_AMINO_ACID_CHANGE=P221;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_119770371_119770538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373986    GT:AD:DP:GQ:PL    0/1:23,27:50:99:871,0,613
9    119770551    rs7036098    G    A    1008.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1042,75,0
9    119801932    rs7035492    T    C    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
9    119858178    rs13301858    C    T    67.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=11.23;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    0/1:3,3:6:97.36:97,0,98
9    119903506    rs10817999    C    T    269.38    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.435;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.27;QD=15.85;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    0/1:7,9:17:99:299,0,242
9    119903807    rs57782747    A    C    1142.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1176,90,0
9    119903827    rs13291457    A    G    454    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.276;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.21;ReadPosRankSum=-1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    0/1:13,15:28:99:484,0,448
9    119977077    rs4543613    T    C    531.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:565,48,0
9    120053776    rs7848630    T    C    1506.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;QD=28.98;SNPEFF_AMINO_ACID_CHANGE=A153;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_120053605_120053792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1540,126,0
9    120053843    rs56025953    G    A    205.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.628;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.375;QD=9.32;ReadPosRankSum=1.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313400    GT:AD:DP:GQ:PL    0/1:14,8:22:99:235,0,500
9    120466929    rs146779008    CA    C    101.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=12;HaplotypeScore=25.3582;IndelType=D;MQ=60.0;MQ0=0;QD=14.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355622    GT:AD:DP:GQ:PL    1/1:1,6:7:19.49:143,19,0
9    120471058    rs2770148    G    A    1409.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355622    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1442,105,0
9    121971069    rs17476783    C    T    148.17    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.902;QD=8.23;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=R358H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_121970997_121971219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DBC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265922    GT:AD:DP:GQ:PL    0/1:11,7:18:99:178,0,341
9    122001000    rs2274157    G    A    435    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.165;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.09;QD=11.15;ReadPosRankSum=0.329;SNPEFF_AMINO_ACID_CHANGE=S206;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_122000933_122001038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DBC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265922    GT:AD:DP:GQ:PL    0/1:24,15:39:99:465,0,747
9    122004545    rs3831067    GAGGACAGGGAT    G    419.27    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=110.3308;IndelType=D;MQ=50.26;MQ0=0;MQRankSum=-2.45;QD=38.12;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DBC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265922    GT:AD:DP:GQ:PL    0/1:5,6:11:99:458,0,718
9    123007004    rs35685406    AT    A    88.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=14.3112;IndelType=D;MQ=60.0;MQ0=0;QD=14.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385079    GT:AD:DP:GQ:PL    1/1:1,5:6:15:130,15,0
9    123170733    rs4837768    C    G    439.16    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=34;Dels=0.0;FS=1.356;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.707;QD=12.92;ReadPosRankSum=0.017;SNPEFF_AMINO_ACID_CHANGE=V1312L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123170625_123170746;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345313    GT:AD:DP:GQ:PL    0/1:18,16:34:99:469,0,511
9    123171656    rs36054791    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345313    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
9    123233705    rs112202333    G    A    35.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.69;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345313    GT:AD:DP:GQ:PL    0/1:1,2:3:21.57:65,0,22
9    123280950    rs2095064    T    C    996.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345313    GT:AD:DP:GQ:PL    1/1:0,33:33:84.25:1029,84,0
9    123287388    rs71509524    T    C    630.72    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.761;DB;DP=30;Dels=0.0;FS=5.416;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=21.02;ReadPosRankSum=-0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472883    GT:AD:DP:GQ:PL    0/1:9,21:30:99:661,0,283
9    123287407    rs77536827    C    G    110.89    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.552;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.491;QD=4.27;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472883    GT:AD:DP:GQ:PL    0/1:20,6:26:99:141,0,645
9    123287592    rs12683306    C    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472883    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    123291036    rs4836822    C    G    1100.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=36.68;SNPEFF_AMINO_ACID_CHANGE=E289Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123291022_123291075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349780    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1133,81,0
9    123313246    rs954214    T    C    472.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345313    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:506,39,0
9    123330813    rs4837782    T    C    201.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491334    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
9    123334445    rs2147381    T    C    67.05    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.76;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345313    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:97,0,30
9    123342259    rs932975    C    A    129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491334    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
9    123342275    rs932974    A    G    62.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491334    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:95,9,0
9    123370345    rs991121    C    G    967.01    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=1.665;DB;DP=55;Dels=0.0;FS=10.328;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.139;QD=17.58;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373930    GT:AD:DP:GQ:PL    0/1:26,29:55:99:997,0,804
9    123374639    rs2416760    T    C    707.73    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=3.075;DB;DP=73;Dels=0.0;FS=2.216;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.055;QD=9.69;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373930    GT:AD:DP:GQ:PL    0/1:35,38:73:99:738,0,1161
9    123421556    rs10984974    C    T    196    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.413;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.971;QD=10.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373930    GT:AD:DP:GQ:PL    0/1:9,9:18:99:226,0,329
9    123421879    rs2274144    A    G    317.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=20;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.643;QD=15.89;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373930    GT:AD:DP:GQ:PL    0/1:10,10:20:99:348,0,315
9    123550027    rs7026635    G    A    856.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXW2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476481    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:889,69,0
9    123560833    rs13285804    C    T    1956.15    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.268;DB;DP=154;Dels=0.0;FS=1.29;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=3.512;QD=12.7;ReadPosRankSum=-0.122;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-27I1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464488    GT:AD:DP:GQ:PL    0/1:84,70:154:99:1986,0,2355
9    123561856    rs12115750    C    A    1263.88    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.539;DB;DP=104;Dels=0.0;FS=3.73;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.056;QD=12.15;ReadPosRankSum=0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-27I1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464488    GT:AD:DP:GQ:PL    0/1:57,47:104:99:1294,0,1803
9    123578214    rs71509546    C    A    46.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210313    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:76,0,34
9    123583192    rs1060817    A    G    602.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.566;DB;DP=42;Dels=0.0;FS=1.242;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.855;QD=14.34;ReadPosRankSum=0.453;SNPEFF_AMINO_ACID_CHANGE=D351;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123583117_123583257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373904    GT:AD:DP:GQ:PL    0/1:21,21:42:99:632,0,638
9    123586581    rs35903891    CAA    C    79.27    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=26;FS=0.0;HRun=17;HaplotypeScore=139.6429;IndelType=D;MQ=56.74;MQ0=0;MQRankSum=-0.76;QD=3.05;ReadPosRankSum=-0.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496688    GT:AD:DP:GQ:PL    0/1:12,9:26:99:118,0,255
9    123586737    rs10760117    T    G    1280.07    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.303;DB;DP=90;Dels=0.0;FS=4.06;HRun=0;HaplotypeScore=0.8941;MQ=59.02;MQ0=0;MQRankSum=-1.663;QD=14.22;ReadPosRankSum=1.375;SNPEFF_AMINO_ACID_CHANGE=L118F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123586408_123586963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373903    GT:AD:DP:GQ:PL    0/1:46,44:90:99:1310,0,1353
9    123631642    rs3753029    G    C    98.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=16.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312189    GT:AD:DP:GQ:PL    0/1:2,4:6:60.72:128,0,61
9    123632829    rs4836833    G    C    544.96    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.151;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9616;MQ=59.09;MQ0=0;MQRankSum=0.613;QD=10.69;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312189    GT:AD:DP:GQ:PL    0/1:28,22:51:99:575,0,851
9    123670505    rs7866003    A    T    146.78    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=16;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=52.57;MQ0=0;MQRankSum=-1.376;QD=9.17;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373887    GT:AD:DP:GQ:PL    0/1:7,9:16:99:177,0,247
9    123671520    rs2239657    G    A    2569.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.78;DB;DP=226;Dels=0.0;FS=7.507;HRun=2;HaplotypeScore=2.9365;MQ=59.8;MQ0=0;MQRankSum=1.904;QD=11.37;ReadPosRankSum=-0.235;SNPEFF_AMINO_ACID_CHANGE=P218;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123671508_123671656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546084    GT:AD:DP:GQ:PL    0/1:129,97:226:99:2599,0,3799
9    123671837    rs2239658    T    C    36.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=7.31;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373887    GT:AD:DP:GQ:PL    0/1:3,2:5:63.16:67,0,63
9    123673890    rs7021880    G    C    95.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=7.93;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373887    GT:AD:DP:GQ:PL    0/1:8,4:12:99:125,0,297
9    123676396    rs2416804    G    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373887    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
9    123676482    rs2416805    T    C    137.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=14;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=9.8;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373887    GT:AD:DP:GQ:PL    0/1:8,6:14:99:167,0,255
9    123676699    rs758959    C    T    78.31    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.58;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373887    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:108,0,30
9    123686219    rs1930780    C    G    120.67    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.13;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373887    GT:AD:DP:GQ:PL    0/1:1,4:5:23.53:151,0,24
9    123734287    rs34545847    GAAAC    G    356.58    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=3.982;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=147.7835;IndelType=D;MQ=57.49;MQ0=0;MQRankSum=-0.457;QD=10.81;ReadPosRankSum=0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223642    GT:AD:DP:GQ:PL    0/1:24,9:33:99:396,0,1609
9    123737018    rs2269066    C    T    649.50    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=42;Dels=0.0;FS=1.831;HRun=1;HaplotypeScore=0.6651;MQ=59.45;MQ0=0;MQRankSum=-0.416;QD=15.46;ReadPosRankSum=-0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489802    GT:AD:DP:GQ:PL    0/1:20,22:42:99:679,0,651
9    123737040    rs2269067    G    C    875.96    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=58.76;MQ0=0;MQRankSum=0.333;QD=15.64;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489802    GT:AD:DP:GQ:PL    0/1:23,33:56:99:906,0,701
9    123751800    rs3764912    A    G    254.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430906    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
9    123758425    rs10760134    T    C    1914.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466280    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1947,144,0
9    123760086    rs34704763    AT    A    358.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=12;HaplotypeScore=127.9299;IndelType=D;MQ=59.58;MQ0=0;QD=12.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466280    GT:AD:DP:GQ:PL    1/1:11,17:29:52.80:400,53,0
9    123760107    rs10985118    G    C    466.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466280    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:500,39,0
9    123760173    rs13297393    C    T    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466280    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
9    123769200    rs17611    C    T    1933.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=V802I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123769182_123769255;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000223642    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1967,144,0
9    123780005    rs25681    G    A    1881.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=Y544;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123779921_123780130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000223642    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1915,138,0
9    123782138    rs2241004    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223642    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    123789634    rs2416811    C    T    1010.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223642    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1044,75,0
9    123797324    rs10760138    T    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223642    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    123800094    rs10818499    T    A    163.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223642    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
9    123850770    rs10818503    G    A    1381.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=V56I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123850574_123850821;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1414,105,0
9    123852859    rs1323474    C    T    84.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,4:4:11.99:117,12,0
9    123857085    rs10760146    C    T    760.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:793,60,0
9    123860689    rs10818504    C    T    2109.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=P216L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123860664_123860850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2143,157,0
9    123888242    rs10760150    G    T    951.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:985,72,0
9    123902901    .    T    C    320.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=17.79;ReadPosRankSum=-0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    0/1:8,10:18:99:350,0,278
9    123906001    rs1407912    A    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    123907806    rs10454363    A    C    252.92    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=28.1;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    0/1:1,8:9:14.14:283,0,14
9    123908345    rs7023214    G    A    488.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:521,39,0
9    123914592    rs4836840    T    C    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373851    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:66,6,0
9    123917020    rs3736855    T    A    2397.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=V1398;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_123916999_123917191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2430,178,0
9    123917355    rs10818512    A    G    458.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373851    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:492,36,0
9    123920563    rs3736856    G    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373847    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
9    123922729    rs35562325    A    ATGT    665.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=36.7098;IndelType=I;MQ=44.47;MQ0=0;QD=55.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373847    GT:AD:DP:GQ:PL    1/1:1,10:12:33.11:707,33,0
9    123924667    rs113967611    CAT    C    1014.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=94.1787;IndelType=D;MQ=57.0;MQ0=0;QD=42.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373844    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:1056,69,0
9    123927477    rs4836841    T    A    1002.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373844    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1035,75,0
9    123928486    rs2273988    T    C    830.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373844    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:863,63,0
9    123928569    rs1535655    G    A    164.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373844    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
9    123929710    rs10818513    A    G    611.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:645,48,0
9    123930296    rs2146836    A    C    782.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:815,60,0
9    123937601    rs3789310    T    C    1017.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=32.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439778    GT:AD:DP:GQ:PL    1/1:0,31:31:81.24:1051,81,0
9    123939336    rs11403737    T    TA    531.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=26.9904;IndelType=I;MQ=62.28;MQ0=0;QD=37.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454238    GT:AD:DP:GQ:PL    1/1:1,13:14:39.13:573,39,0
9    123943884    rs2296078    C    T    521.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238341    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:554,42,0
9    123945505    rs35634666    C    CA    825.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=9;HaplotypeScore=90.6286;IndelType=I;MQ=59.13;MQ0=0;QD=29.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373840    GT:AD:DP:GQ:PL    1/1:0,27:28:81.03:868,81,0
9    123945909    rs7854324    C    G    132.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373840    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
9    123955756    rs10818516    G    A    329.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=29.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373840    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:363,27,0
9    123955765    rs6478504    A    C    248.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373840    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
9    124043867    rs10985200    C    T    774.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.98;DB;DP=58;Dels=0.0;FS=5.341;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.187;QD=13.36;ReadPosRankSum=0.078;SNPEFF_AMINO_ACID_CHANGE=T154;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_124043046_124047808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414544    GT:AD:DP:GQ:PL    0/1:29,29:58:99:805,0,865
9    124073176    rs306785    T    C    382.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341272    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:416,30,0
9    124074420    rs2039144    G    A    195.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341272    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:229,18,0
9    124076016    rs306760    G    A    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.15;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449773    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:67,0,73
9    124080815    rs13290309    G    C    208.52    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=11.58;ReadPosRankSum=1.288;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432226    GT:AD:DP:GQ:PL    0/1:10,8:18:99:239,0,357
9    124083420    rs2304392    G    A    151.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.14;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432226    GT:AD:DP:GQ:PL    0/1:4,6:10:99:181,0,113
9    124083614    rs2304393    C    T    334.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.822;DB;DP=28;Dels=0.0;FS=14.075;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.659;QD=11.95;ReadPosRankSum=-1.061;SNPEFF_AMINO_ACID_CHANGE=G202;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_124083546_124083679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373807    GT:AD:DP:GQ:PL    0/1:14,14:28:99:364,0,340
9    124088768    rs306769    T    C    539.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=26.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341272    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:573,42,0
9    124089173    rs216784    C    T    913.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341272    GT:AD:DP:GQ:PL    1/1:0,27:27:72.22:947,72,0
9    124091135    rs306771    G    A    495.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341272    GT:AD:DP:GQ:PL    1/1:1,16:17:39.13:529,39,0
9    124094590    rs7039494    A    T    152.32    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=8.46;ReadPosRankSum=-0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373807    GT:AD:DP:GQ:PL    0/1:10,8:18:99:182,0,318
9    124116776    rs41316974    C    A    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286713    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,106
9    124116793    rs7028176    G    A    75.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=6.3;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286713    GT:AD:DP:GQ:PL    0/1:8,4:12:99:106,0,279
9    124118253    rs58052380    T    C    172.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=11.52;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286713    GT:AD:DP:GQ:PL    0/1:9,6:15:99:203,0,323
9    124218133    rs3747845    C    T    417.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-162D16.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440807    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:450,33,0
9    124222267    rs2289068    A    G    869.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGTA1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373793    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:903,66,0
9    124225479    rs3747844    A    G    30.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.73;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGTA1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373793    GT:AD:DP:GQ:PL    0/1:2,2:4:60.89:61,0,68
9    124241314    rs871671    A    G    108.91    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=12.1;ReadPosRankSum=-0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGTA1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373793    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,153
9    124241369    rs871670    T    G    544.04    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.033;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.033;QD=22.67;ReadPosRankSum=0.767;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGTA1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373793    GT:AD:DP:GQ:PL    0/1:6,18:24:99:574,0,178
9    124622502    rs4381015    C    A    71.15    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=8.89;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321582    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,186
9    124632735    rs4384052    C    T    490.11    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.719;DB;DP=32;Dels=0.0;FS=6.405;HRun=0;HaplotypeScore=0.9832;MQ=59.28;MQ0=0;MQRankSum=-0.415;QD=15.32;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321582    GT:AD:DP:GQ:PL    0/1:15,17:32:99:520,0,534
9    124633096    rs4370602    G    A    496.14    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.575;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.56;MQ0=0;MQRankSum=-0.664;QD=18.38;ReadPosRankSum=-0.451;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321582    GT:AD:DP:GQ:PL    0/1:8,19:27:99:526,0,257
9    124736081    rs4534187    G    A    113.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.17;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321582    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,121
9    124855211    rs61742319    C    T    42.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.08;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=A163T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_124854966_124855885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321582    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:72,0,20
9    124906723    rs3818638    T    C    309.73    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=24;Dels=0.0;FS=2.007;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.91;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373768    GT:AD:DP:GQ:PL    0/1:13,11:24:99:340,0,416
9    124910582    rs3793616    C    A    582.91    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.032;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-1.036;QD=13.88;ReadPosRankSum=-0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373768    GT:AD:DP:GQ:PL    0/1:23,19:42:99:613,0,727
9    124914613    rs4679    C    T    432.67    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=44;Dels=0.0;FS=1.232;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.647;QD=9.83;ReadPosRankSum=-0.598;SNPEFF_AMINO_ACID_CHANGE=E42;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_124914524_124914687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373768    GT:AD:DP:GQ:PL    0/1:28,16:44:99:463,0,870
9    124929006    rs2274747    G    C    180.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=15.01;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373764    GT:AD:DP:GQ:PL    0/1:6,6:12:99:210,0,199
9    124929211    rs1411444    A    G    65.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.358;QD=10.84;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373764    GT:AD:DP:GQ:PL    0/1:3,3:6:59.95:95,0,60
9    124976475    rs62574050    C    G    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340587    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    125027119    rs7035313    A    C    249.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373724    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:283,21,0
9    125133479    rs1236913    T    C    734.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=27.22;SNPEFF_AMINO_ACID_CHANGE=W5R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125133467_125133551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426608    GT:AD:DP:GQ:PL    1/1:0,27:27:63.13:768,63,0
9    125144145    rs1238420    A    G    112.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223423    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
9    125240175    rs147391208    C    T    1110.05    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=3.45;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.943;QD=16.57;ReadPosRankSum=0.31;SNPEFF_AMINO_ACID_CHANGE=E11K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125239220_125240235;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259357    GT:AD:DP:GQ:PL    0/1:29,38:67:99:1140,0,756
9    125272957    rs71511508    G    A    119.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.159;QD=11.95;ReadPosRankSum=-2.219;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1J2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335302    GT:AD:DP:GQ:PL    0/1:4,6:10:99:150,0,135
9    125273385    .    A    AT    679.67    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.233;DP=56;FS=1.093;HRun=7;HaplotypeScore=129.2381;IndelType=I;MQ=59.59;MQ0=0;MQRankSum=-0.359;QD=12.14;ReadPosRankSum=1.136;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_125273081_125274022;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1J2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000335302    GT:AD:DP:GQ:PL    0/1:34,22:56:99:719,0,603
9    125282393    rs1318392    C    T    410.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.84;DB;DP=24;Dels=0.0;FS=2.793;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.42;QD=17.12;ReadPosRankSum=-0.484;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1J2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444856    GT:AD:DP:GQ:PL    0/1:9,15:24:99:441,0,241
9    125288425    rs7025073    A    G    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304880    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
9    125289521    rs10818708    G    A    386.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.611;DB;DP=27;Dels=0.0;FS=1.51;HRun=0;HaplotypeScore=0.9995;MQ=59.14;MQ0=0;MQRankSum=1.976;QD=14.3;ReadPosRankSum=0.756;SNPEFF_AMINO_ACID_CHANGE=P18S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125288637_125289572;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304880    GT:AD:DP:GQ:PL    0/1:12,15:27:99:416,0,343
9    125315329    rs7032193    G    A    197.71    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=19;Dels=0.0;FS=2.058;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.449;QD=10.41;ReadPosRankSum=0.906;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    0/1:11,7:19:99:228,0,360
9    125315376    rs11412445    C    CT    1519.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=5;HaplotypeScore=189.1201;IndelType=I;MQ=61.05;MQ0=0;QD=37.06;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    1/1:1,40:41:99:1562,120,0
9    125315393    rs12684786    G    A    893.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=54;Dels=0.0;FS=2.921;HRun=1;HaplotypeScore=0.0;MQ=60.8;MQ0=0;MQRankSum=0.235;QD=16.54;ReadPosRankSum=-0.531;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_125315391_125316493;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    0/1:24,30:54:99:923,0,734
9    125315557    rs1831370    T    C    803.97    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.338;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.525;QD=12.97;ReadPosRankSum=-0.17;SNPEFF_AMINO_ACID_CHANGE=W37R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125315391_125316493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    0/1:30,32:62:99:834,0,921
9    125315778    rs1411271    G    C    2308.54    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=4.389;DB;DP=138;Dels=0.0;FS=0.636;HRun=1;HaplotypeScore=0.8941;MQ=59.83;MQ0=0;MQRankSum=-0.249;QD=16.73;ReadPosRankSum=-1.724;SNPEFF_AMINO_ACID_CHANGE=S110;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125315391_125316493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    0/1:62,76:138:99:2339,0,1757
9    125316028    rs41297203    T    C    1219.21    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=90;Dels=0.0;FS=6.025;HRun=0;HaplotypeScore=4.2023;MQ=58.97;MQ0=0;MQRankSum=0.787;QD=13.55;ReadPosRankSum=0.602;SNPEFF_AMINO_ACID_CHANGE=F194L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125315391_125316493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    0/1:43,46:90:99:1249,0,1358
9    125316033    rs1341042    T    C    1261.51    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=92;Dels=0.0;FS=10.03;HRun=0;HaplotypeScore=3.5372;MQ=58.99;MQ0=0;MQRankSum=-1.703;QD=13.71;ReadPosRankSum=-0.442;SNPEFF_AMINO_ACID_CHANGE=Y195;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125315391_125316493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    0/1:48,44:92:99:1292,0,1379
9    125316042    rs1341043    T    C    1315.13    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.248;DB;DP=97;Dels=0.0;FS=7.112;HRun=2;HaplotypeScore=1.9258;MQ=59.04;MQ0=0;MQRankSum=-0.526;QD=13.56;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=P198;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125315391_125316493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    0/1:49,48:97:99:1345,0,1472
9    125316179    rs1341044    T    G    3395.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=35.75;SNPEFF_AMINO_ACID_CHANGE=V244G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125315391_125316493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3396,256,0
9    125316350    rs1411272    C    T    648.05    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=3.095;DB;DP=50;Dels=0.0;FS=6.34;HRun=0;HaplotypeScore=4.4338;MQ=59.07;MQ0=0;MQRankSum=-0.611;QD=12.96;ReadPosRankSum=-1.352;SNPEFF_AMINO_ACID_CHANGE=T301M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125315391_125316493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1N2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373688    GT:AD:DP:GQ:PL    0/1:26,24:50:99:678,0,797
9    125328269    rs4837992    T    C    77.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=11.02;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304865    GT:AD:DP:GQ:PL    0/1:3,4:7:99:107,0,104
9    125328360    rs3962623    G    A    557.32    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=4.388;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=15.92;ReadPosRankSum=-0.944;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304865    GT:AD:DP:GQ:PL    0/1:16,19:35:99:587,0,431
9    125328476    rs4836897    C    T    1228.25    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.935;DB;DP=79;Dels=0.0;FS=3.163;HRun=1;HaplotypeScore=0.9665;MQ=59.71;MQ0=0;MQRankSum=0.648;QD=15.55;ReadPosRankSum=-0.526;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304865    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1258,0,1010
9    125328638    rs10513407    T    A    141.05    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=2.793;QD=11.75;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304865    GT:AD:DP:GQ:PL    0/1:7,5:12:99:171,0,238
9    125328641    rs34302833    G    A    131.59    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.96;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304865    GT:AD:DP:GQ:PL    0/1:5,6:11:99:162,0,172
9    125330125    rs10739614    C    G    413.63    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.208;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8815;MQ=60.0;MQ0=0;MQRankSum=0.451;QD=12.17;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=R211P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125329778_125330838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304865    GT:AD:DP:GQ:PL    0/1:19,15:34:99:444,0,597
9    125330678    rs10985704    T    G    437.25    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=40;Dels=0.0;FS=5.237;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.082;QD=10.93;ReadPosRankSum=-1.45;SNPEFF_AMINO_ACID_CHANGE=T27P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125329778_125330838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304865    GT:AD:DP:GQ:PL    0/1:23,17:40:99:467,0,708
9    125330739    rs1999182    G    A    366.17    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=20;Dels=0.0;FS=5.161;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=18.31;ReadPosRankSum=1.189;SNPEFF_AMINO_ACID_CHANGE=H6;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125329778_125330838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304865    GT:AD:DP:GQ:PL    0/1:7,13:20:99:396,0,214
9    125376842    rs972926    T    C    290.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1Q1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297913    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
9    125377087    rs972925    A    G    1131.61    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.809;DB;DP=114;Dels=0.0;FS=0.737;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.612;QD=9.93;ReadPosRankSum=0.539;SNPEFF_AMINO_ACID_CHANGE=Q24R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125376948_125378026;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1Q1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297913    GT:AD:DP:GQ:PL    0/1:66,48:114:99:1162,0,1842
9    125377505    rs1329957    A    G    2587.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=I163M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125376948_125378026;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1Q1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297913    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2620,196,0
9    125378014    rs77186006    T    G    366.90    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=21.58;ReadPosRankSum=0.151;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1Q1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000297913    GT:AD:DP:GQ:PL    0/1:6,11:17:99:397,0,200
9    125390874    rs1556189    A    C    364.64    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=3.229;DB;DP=39;Dels=0.0;FS=1.317;HRun=3;HaplotypeScore=1.5661;MQ=59.41;MQ0=0;MQRankSum=1.028;QD=9.35;ReadPosRankSum=0.264;SNPEFF_AMINO_ACID_CHANGE=V314G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125390858_125391852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304833    GT:AD:DP:GQ:PL    0/1:21,17:39:99:395,0,661
9    125391026    rs1476858    A    C    1417.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=C263W;SNPEFF_CODON_CHANGE=tgT/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125390858_125391852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304833    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1451,108,0
9    125391369    rs1536929    A    G    424.53    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.072;DB;DP=36;Dels=0.0;FS=1.438;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.226;QD=11.79;ReadPosRankSum=0.334;SNPEFF_AMINO_ACID_CHANGE=L149S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125390858_125391852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304833    GT:AD:DP:GQ:PL    0/1:20,16:36:99:455,0,671
9    125391409    rs1536928    A    G    708.15    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.933;DB;DP=43;Dels=0.0;FS=15.865;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.203;QD=16.47;ReadPosRankSum=-0.603;SNPEFF_AMINO_ACID_CHANGE=L136;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125390858_125391852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304833    GT:AD:DP:GQ:PL    0/1:18,25:43:99:738,0,560
9    125391770    rs72541201    C    CA    329.99    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.693;DB;DP=43;FS=5.284;HRun=7;HaplotypeScore=118.6884;IndelType=I;MQ=59.46;MQ0=0;MQRankSum=-0.744;QD=7.67;ReadPosRankSum=1.347;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_125390858_125391852;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1B1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000304833    GT:AD:DP:GQ:PL    0/1:27,16:43:99:369,0,506
9    125391917    rs1329951    A    G    95.09    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.835;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=7.92;ReadPosRankSum=1.134;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304833    GT:AD:DP:GQ:PL    0/1:8,4:12:99:125,0,283
9    125391940    rs7037571    C    G    161.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304833    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:194,15,0
9    125486968    rs2215530    G    A    5436.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=50.12;MQ0=4;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=G234R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125486269_125487204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259466    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5437,409,0
9    125512193    rs10760252    C    A    3741.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=Q23K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125512127_125513062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304720    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3742,283,0
9    125512575    rs4838012    G    A    3580.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=45.38;MQ0=10;QD=29.11;SNPEFF_AMINO_ACID_CHANGE=C150Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125512127_125513062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304720    GT:AD:DP:GQ:PL    1/1:7,115:123:99:3581,280,0
9    125512770    rs10985760    T    C    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.64;MQ0=3;QD=3.75;SNPEFF_AMINO_ACID_CHANGE=I215T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125512127_125513062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304720    GT:AD:DP:GQ:PL    1/1:0,27:27:12.03:134,12,0
9    125512788    rs10818740    G    A    354.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.55;MQ0=4;QD=9.34;SNPEFF_AMINO_ACID_CHANGE=R221Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125512127_125513062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304720    GT:AD:DP:GQ:PL    1/1:0,38:38:33.06:388,33,0
9    125512795    rs10818741    G    C    530.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.93;MQ0=4;QD=12.94;SNPEFF_AMINO_ACID_CHANGE=M223I;SNPEFF_CODON_CHANGE=atG/atC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125512127_125513062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304720    GT:AD:DP:GQ:PL    1/1:0,41:41:45.14:564,45,0
9    125512826    rs28670025    G    A    1571.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=38.76;MQ0=3;QD=26.63;SNPEFF_AMINO_ACID_CHANGE=G234R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125512127_125513062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304720    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1604,123,0
9    125562527    rs10985782    T    C    134.21    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.546;DB;DP=28;Dels=0.0;FS=4.682;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.671;QD=4.79;ReadPosRankSum=-0.262;SNPEFF_AMINO_ACID_CHANGE=G42;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125562370_125563395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1K1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277309    GT:AD:DP:GQ:PL    0/1:21,7:28:99:164,0,559
9    125620105    rs5900549    C    CA    454.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=39.0785;IndelType=I;MQ=59.89;MQ0=0;QD=37.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RC3H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475161    GT:AD:DP:GQ:PL    1/1:1,11:12:36.12:496,36,0
9    125637471    rs2596699    A    T    3814.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8662;MQ=59.9;MQ0=0;MQRankSum=0.972;QD=32.88;ReadPosRankSum=0.729;SNPEFF_AMINO_ACID_CHANGE=V501E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125636065_125637647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RC3H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335387    GT:AD:DP:GQ:PL    1/1:1,115:116:99:3814,274,0
9    125637648    rs2596698    T    C    1710.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=33.53;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RC3H2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000335387    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1743,138,0
9    125641850    rs2596703    A    T    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RC3H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335387    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
9    125642687    rs2251495    G    A    338.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RC3H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335387    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:372,30,0
9    125659520    rs2793005    T    C    430.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=28.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RC3H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335387    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:464,36,0
9    125673051    rs1147321    T    G    715.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373656    GT:AD:DP:GQ:PL    1/1:0,23:23:60.17:749,60,0
9    125746551    rs12337722    A    G    31.23    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=3.9;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317419    GT:AD:DP:GQ:PL    0/1:6,2:8:61.22:61,0,206
9    125747038    rs614274    G    T    973.45    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=4.149;DB;DP=83;Dels=0.0;FS=17.462;HRun=5;HaplotypeScore=1.9899;MQ=59.72;MQ0=0;MQRankSum=1.307;QD=11.73;ReadPosRankSum=-0.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402311    GT:AD:DP:GQ:PL    0/1:42,41:83:99:1003,0,1372
9    125748867    rs676805    G    C    40.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402311    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:72,6,0
9    125752613    rs618275    C    G    93.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459903    GT:AD:DP:GQ:PL    1/1:0,4:4:12:126,12,0
9    125760711    rs586863    C    T    258.91    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=28.77;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426918    GT:AD:DP:GQ:PL    0/1:1,8:9:15.92:289,0,16
9    125760863    rs587364    T    C    1517.63    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=125;Dels=0.0;FS=0.793;HRun=1;HaplotypeScore=0.8941;MQ=59.7;MQ0=0;MQRankSum=1.348;QD=12.14;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426918    GT:AD:DP:GQ:PL    0/1:69,56:125:99:1548,0,2320
9    125761051    rs605546    G    A    1026.76    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.553;QD=12.22;ReadPosRankSum=-0.327;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426918    GT:AD:DP:GQ:PL    0/1:49,35:84:99:1057,0,1679
9    125761059    rs28416273    C    T    1213.23    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=71;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.771;QD=17.09;ReadPosRankSum=0.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426918    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1243,0,922
9    125777927    rs673977    T    C    68.91    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.398;QD=6.26;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373647    GT:AD:DP:GQ:PL    0/1:7,4:11:98.90:99,0,223
9    125797918    rs72121262    CGTGTGTGTGT    C    906.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.311;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=451.2248;IndelType=D;MQ=45.59;MQ0=0;MQRankSum=-1.416;QD=20.14;ReadPosRankSum=2.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412269    GT:AD:DP:GQ:PL    1/1:29,9:45:40.89:949,41,0
9    125832879    rs803733    T    C    40.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373643    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:71,0,70
9    125838818    rs141942619    T    G    194.32    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=16;Dels=0.0;FS=3.59;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=12.15;ReadPosRankSum=0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475607    GT:AD:DP:GQ:PL    0/1:9,7:16:99:224,0,315
9    125861695    rs700080    T    C    318.44    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.0;MQ0=0;MQRankSum=0.592;QD=9.1;ReadPosRankSum=1.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480054    GT:AD:DP:GQ:PL    0/1:23,12:35:99:348,0,782
9    125861888    rs700081    A    G    597.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480054    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:631,48,0
9    125864093    rs7873689    T    G    284.70    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.27;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=17.79;ReadPosRankSum=-1.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RABGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480054    GT:AD:DP:GQ:PL    0/1:7,9:16:99:315,0,223
9    125920376    rs803736    G    A    1913.67    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.989;DB;DP=128;Dels=0.0;FS=0.747;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-1.261;QD=14.95;ReadPosRankSum=-2.352;SNPEFF_AMINO_ACID_CHANGE=G306;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_125920291_125920402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STRBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360998    GT:AD:DP:GQ:PL    0/1:60,68:128:99:1944,0,1677
9    125920807    rs142605162    GA    G    90.26    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;FS=0.0;HRun=10;HaplotypeScore=21.2618;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=0.248;QD=10.03;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348403    GT:AD:DP:GQ:PL    0/1:3,6:9:72.57:129,0,73
9    125922854    rs75672330    C    CA    171.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=17.1982;IndelType=I;MQ=61.53;MQ0=0;QD=24.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348403    GT:AD:DP:GQ:PL    1/1:1,6:7:18.05:213,18,0
9    126028395    rs7863265    C    G    1300.18    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=93;Dels=0.0;FS=3.965;HRun=0;HaplotypeScore=4.2129;MQ=59.25;MQ0=0;MQRankSum=-0.84;QD=13.98;ReadPosRankSum=-1.348;SNPEFF_AMINO_ACID_CHANGE=F10L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126027482_126029254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL365504.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328281    GT:AD:DP:GQ:PL    0/1:49,44:93:99:1330,0,1557
9    126125318    rs2808415    C    A    1103    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=29.03;SNPEFF_AMINO_ACID_CHANGE=T90N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126125144_126125467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    1/1:0,38:38:93.26:1136,93,0
9    126128211    rs1105223    T    C    142.50    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=12.95;ReadPosRankSum=1.668;SNPEFF_AMINO_ACID_CHANGE=M145T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126128196_126128391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    0/1:5,6:11:99:172,0,138
9    126128253    rs1105222    G    C    127.37    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=6.854;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=14.15;ReadPosRankSum=0.876;SNPEFF_AMINO_ACID_CHANGE=G159A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126128196_126128391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    0/1:4,5:9:99:157,0,105
9    126128679    rs11790447    G    C    73.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
9    126129351    rs10760281    G    A    171.83    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=22;Dels=0.0;FS=4.434;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.668;QD=7.81;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    0/1:13,9:22:99:202,0,394
9    126132329    rs7034379    T    C    801.34    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=3.411;DB;DP=57;Dels=0.0;FS=1.192;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.148;QD=14.06;ReadPosRankSum=1.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    0/1:29,27:57:99:831,0,896
9    126132919    rs33984675    G    A    572.18    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=3.037;DB;DP=54;Dels=0.0;FS=2.416;HRun=1;HaplotypeScore=2.8311;MQ=58.71;MQ0=0;MQRankSum=-0.706;QD=10.6;ReadPosRankSum=-1.495;SNPEFF_AMINO_ACID_CHANGE=A197;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126132387_126133259;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373629    GT:AD:DP:GQ:PL    0/1:33,20:54:99:602,0,1001
9    126133497    rs13290763    C    T    2034.97    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=4.615;DB;DP=135;Dels=0.0;FS=6.973;HRun=0;HaplotypeScore=2.3391;MQ=59.31;MQ0=0;MQRankSum=-1.271;QD=15.07;ReadPosRankSum=0.565;SNPEFF_AMINO_ACID_CHANGE=S360;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126133349_126133857;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373629    GT:AD:DP:GQ:PL    0/1:69,66:135:99:2065,0,1925
9    126133547    rs2488602    T    C    3221.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=V377A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126133349_126133857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373629    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3255,274,0
9    126134542    rs61740213    G    A    459.14    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=36;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=1.5226;MQ=58.87;MQ0=0;MQRankSum=-0.529;QD=12.41;ReadPosRankSum=1.133;SNPEFF_AMINO_ACID_CHANGE=T509;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126134456_126134621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373629    GT:AD:DP:GQ:PL    0/1:17,19:36:99:489,0,434
9    126135715    rs2488601    A    G    117.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.56;SNPEFF_AMINO_ACID_CHANGE=T637A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126135413_126136199;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373629    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:151,15,0
9    126136623    rs13288149    G    C    75.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
9    126136688    rs35902524    G    GA    212.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=36.4089;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.779;QD=17.74;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    0/1:6,6:12:99:252,0,216
9    126139065    rs10760283    G    A    95.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359999    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
9    126144746    rs2491348    T    C    414.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=G450;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126143608_126144904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542603    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:448,36,0
9    126144758    rs2808409    T    C    489.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.17;SNPEFF_AMINO_ACID_CHANGE=S446;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126143608_126144904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542603    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:522,42,0
9    126145907    rs2797946    C    A    2762    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=34.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373629    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2795,208,0
9    126146189    rs75693594    C    G    71.43    FSFilter60;QDFilter2    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.243;DB;DP=50;Dels=0.0;FS=74.31;HRun=2;HaplotypeScore=0.0;MQ=51.59;MQ0=0;MQRankSum=-3.738;QD=1.43;ReadPosRankSum=-1.384;SNPEFF_AMINO_ACID_CHANGE=P312;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126145934_126146192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542603    GT:AD:DP:GQ:PL    0/1:37,13:50:99:101,0,1066
9    126146197    rs2808411    C    G    1096.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.33;MQ0=0;QD=27.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460253    GT:AD:DP:GQ:PL    1/1:0,40:40:90.28:1129,90,0
9    126202551    rs10739633    A    C    160.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373618    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
9    126219453    rs10760288    G    T    495.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373618    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:528,42,0
9    126439100    rs12377595    T    G    301.10    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=22;Dels=0.0;FS=7.025;HRun=0;HaplotypeScore=0.9998;MQ=58.95;MQ0=0;MQRankSum=1.373;QD=13.69;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373618    GT:AD:DP:GQ:PL    0/1:12,10:22:99:331,0,327
9    126783433    rs1042486    G    C    762.07    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.101;DB;DP=62;Dels=0.0;FS=0.989;HRun=3;HaplotypeScore=3.6614;MQ=58.35;MQ0=0;MQRankSum=1.101;QD=12.29;ReadPosRankSum=0.645;SNPEFF_AMINO_ACID_CHANGE=P261;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_126783378_126783583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373615    GT:AD:DP:GQ:PL    0/1:28,32:62:99:792,0,715
9    126794648    rs28649641    G    A    350.17    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.101;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=7.96;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373615    GT:AD:DP:GQ:PL    0/1:28,16:44:99:380,0,742
9    127075021    rs2274780    T    C    129.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=12.93;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320246    GT:AD:DP:GQ:PL    0/1:4,6:10:99:159,0,140
9    127083725    rs10760352    C    T    240.26    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.223;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=15.02;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320246    GT:AD:DP:GQ:PL    0/1:7,9:16:99:270,0,252
9    127089775    rs748741    A    G    457.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.917;QD=12.7;ReadPosRankSum=2.183;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373596    GT:AD:DP:GQ:PL    0/1:20,15:36:99:487,0,685
9    127101626    rs942277    T    C    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320246    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    127101924    rs10760354    C    T    3444.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.82;MQ0=0;QD=32.49;SNPEFF_AMINO_ACID_CHANGE=L165;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_127101850_127101944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373601    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3444,271,0
9    127102153    rs912354    A    G    118.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422297    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:151,12,0
9    127119356    rs912353    T    G    38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.67;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320246    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:68,0,28
9    127174353    rs10760359    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=16.47;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466951    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:81,6,0
9    127177161    rs4574    A    G    400.56    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.843;DB;DP=28;Dels=0.0;FS=1.518;HRun=2;HaplotypeScore=0.734;MQ=59.17;MQ0=0;MQRankSum=0.369;QD=14.31;ReadPosRankSum=-1.935;SNPEFF_AMINO_ACID_CHANGE=V39A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_127177121_127177214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259457    GT:AD:DP:GQ:PL    0/1:13,15:28:99:431,0,387
9    127177736    rs2236386    G    C    150.31    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.297;DB;DP=28;Dels=0.0;FS=1.983;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.381;QD=5.37;ReadPosRankSum=-0.636;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259457    GT:AD:DP:GQ:PL    0/1:20,8:28:99:180,0,570
9    127228824    rs4838185    T    C    99.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.62;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR144;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439837    GT:AD:DP:GQ:PL    0/1:2,4:6:63.02:130,0,63
9    127245412    rs7037254    C    T    195.27    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.853;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.444;QD=8.88;ReadPosRankSum=-0.853;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR144;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446588    GT:AD:DP:GQ:PL    0/1:14,8:22:99:225,0,494
9    127255448    rs2297605    G    A    136.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=19.49;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373587    GT:AD:DP:GQ:PL    0/1:2,5:7:55.02:166,0,55
9    127495508    rs10760374    C    T    868.64    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=53;Dels=0.0;FS=2.722;HRun=0;HaplotypeScore=4.4582;MQ=59.29;MQ0=0;MQRankSum=-0.062;QD=16.39;ReadPosRankSum=0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344523    GT:AD:DP:GQ:PL    0/1:25,28:53:99:899,0,693
9    127561559    rs2281923    C    T    710.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFML2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331715    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:744,54,0
9    127563364    rs913231    G    A    247.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.66;MQ0=0;QD=24.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFML2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288815    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:280,21,0
9    127566378    rs7874348    A    G    261.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.116;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.066;QD=11.88;ReadPosRankSum=0.066;SNPEFF_AMINO_ACID_CHANGE=T273A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_127566373_127566515;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFML2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331715    GT:AD:DP:GQ:PL    0/1:11,11:22:99:291,0,360
9    127572710    rs7020260    C    G    465.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFML2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288815    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:499,42,0
9    127617754    rs35176761    C    A    254.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348462    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
9    127618776    rs2274970    A    G    382.51    PASS    AB=0.118;AC=1;AF=0.50;AN=2;BaseQRankSum=0.079;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=22.5;ReadPosRankSum=-0.079;SNPEFF_AMINO_ACID_CHANGE=H172R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_127618748_127618879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373574    GT:AD:DP:GQ:PL    0/1:2,15:17:5.66:412,0,6
9    127618839    rs10760381    C    G    421.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_AMINO_ACID_CHANGE=A193G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_127618748_127618879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373574    GT:AD:DP:GQ:PL    1/1:0,17:17:33.11:455,33,0
9    127619005    rs74942099    G    C    372.22    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.967;DB;DP=28;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.276;QD=13.29;ReadPosRankSum=0.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348462    GT:AD:DP:GQ:PL    0/1:15,13:28:99:402,0,477
9    127619553    rs10819000    C    G    898.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.4;MQ0=0;QD=39.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348462    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:932,69,0
9    127619625    rs80164849    G    GC    2062.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=6;HaplotypeScore=162.1343;IndelType=I;MQ=60.16;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348462    GT:AD:DP:GQ:PL    1/1:3,56:59:99:2104,169,0
9    127619922    rs944952    T    C    1016.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348462    GT:AD:DP:GQ:PL    1/1:0,30:31:78.26:1049,78,0
9    127637215    rs581558    T    G    1896.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373555    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1929,141,0
9    127643081    rs2241923    G    C    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.01;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259477    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,73
9    127643946    rs2304957    A    G    354.40    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.134;QD=15.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259477    GT:AD:DP:GQ:PL    0/1:9,14:23:99:384,0,303
9    127644882    rs596231    G    A    703.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259477    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:736,54,0
9    127650321    rs754508    G    C    610.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485337    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:644,51,0
9    127651341    rs894616    C    T    143.87    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.21;MQ0=0;MQRankSum=0.922;QD=20.55;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485337    GT:AD:DP:GQ:PL    0/1:2,5:7:59.27:174,0,59
9    127673949    rs10819007    C    T    175.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373555    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
9    127674200    rs583134    A    C    2566.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=L317V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_127674180_127674305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373555    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2599,199,0
9    127700667    rs2120226    AAT    A    194.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=24.4157;IndelType=D;MQ=58.91;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373555    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
9    127733926    rs2289631    C    T    2807.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336505    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2840,205,0
9    127757310    rs6478690    C    T    431.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487795    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:465,36,0
9    127764305    rs764304    G    A    1508.27    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=87;Dels=0.0;FS=3.233;HRun=0;HaplotypeScore=1.787;MQ=59.3;MQ0=0;MQRankSum=0.462;QD=17.34;ReadPosRankSum=1.997;SNPEFF_AMINO_ACID_CHANGE=S361;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_127764244_127764322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336505    GT:AD:DP:GQ:PL    0/1:38,49:87:99:1538,0,1122
9    127765978    rs4837005    T    C    170.33    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=21.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336505    GT:AD:DP:GQ:PL    0/1:2,6:8:60.69:200,0,61
9    127975583    rs359588    T    C    3630.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.79;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259460    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3630,283,0
9    127982775    rs35811664    CT    C    2217.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=1;HaplotypeScore=148.3805;IndelType=D;MQ=60.8;MQ0=0;QD=41.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259460    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2260,163,0
9    128070227    rs1333055    G    C    1428.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GAPVD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265956    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1462,105,0
9    128072273    rs568409    G    C    1424.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.44;MQ0=0;QD=34.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GAPVD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394084    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1458,105,0
9    128074807    rs432757    T    C    1521.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=I506;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_128074731_128074891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GAPVD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265956    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1554,120,0
9    128112896    rs10986718    G    A    255.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GAPVD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265956    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
9    128116817    rs937482    A    G    415.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.99;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_128115650_128117120;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GAPVD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438537    GT:AD:DP:GQ:PL    1/1:0,13:13:36.07:449,36,0
9    128121592    rs2270746    A    G    190.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GAPVD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265956    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:223,18,0
9    128124798    rs13291306    A    T    1311.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.38;MQ0=0;MQRankSum=-0.328;QD=35.45;ReadPosRankSum=0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GAPVD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467707    GT:AD:DP:GQ:PL    1/1:1,36:37:69.75:1345,70,0
9    128201098    rs7864593    A    G    913.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483937    GT:AD:DP:GQ:PL    1/1:0,31:31:72.22:947,72,0
9    128206717    rs907501    C    G    844.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420643    GT:AD:DP:GQ:PL    1/1:0,24:24:69.20:877,69,0
9    128246786    rs2070113    G    A    583.22    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=12.41;ReadPosRankSum=0.521;SNPEFF_AMINO_ACID_CHANGE=H153;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_128246722_128246862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420643    GT:AD:DP:GQ:PL    0/1:26,20:47:99:613,0,840
9    128321771    rs562004    T    C    77.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468896    GT:AD:DP:GQ:PL    0/1:2,3:5:65.29:107,0,65
9    128327891    rs545320    A    C    626.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265960    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:659,51,0
9    128347695    rs193109520    C    A    389.17    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.159;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.121;QD=14.41;ReadPosRankSum=0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265960    GT:AD:DP:GQ:PL    0/1:13,14:27:99:419,0,440
9    128711809    rs13298715    A    G    70.73    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=7.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342287    GT:AD:DP:GQ:PL    0/1:5,4:9:99:101,0,139
9    128724304    rs888230    A    C    65.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=8.17;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342287    GT:AD:DP:GQ:PL    0/1:4,4:8:95.36:95,0,137
9    128724683    rs2111358    A    C    33.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342287    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:63,0,31
9    129097817    rs1230752    G    A    164.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM125B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361171    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
9    129143242    rs917778    A    G    311.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM125B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361171    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:344,27,0
9    129143315    rs62766561    A    G    314.30    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.688;QD=10.84;ReadPosRankSum=-0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM125B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361171    GT:AD:DP:GQ:PL    0/1:16,13:29:99:344,0,544
9    129158002    rs722538    G    A    1311.28    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=75;Dels=0.0;FS=6.735;HRun=0;HaplotypeScore=6.9809;MQ=59.44;MQ0=0;MQRankSum=0.663;QD=17.48;ReadPosRankSum=1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM125B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402437    GT:AD:DP:GQ:PL    0/1:36,39:75:99:1341,0,1042
9    129246177    rs2286886    T    C    557.89    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.819;DB;DP=59;Dels=0.0;FS=5.178;HRun=0;HaplotypeScore=1.6553;MQ=58.82;MQ0=0;MQRankSum=0.339;QD=9.46;ReadPosRankSum=0.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM125B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361171    GT:AD:DP:GQ:PL    0/1:37,22:59:99:588,0,1143
9    129377855    rs1336980    G    C    109.73    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.19;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMX1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355497    GT:AD:DP:GQ:PL    0/1:4,5:9:99:140,0,120
9    129595895    rs3118994    T    C    999.01    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.574;DB;DP=71;Dels=0.0;FS=0.889;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.144;QD=14.07;ReadPosRankSum=-0.927;SNPEFF_AMINO_ACID_CHANGE=T369;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_129593688_129599382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373457    GT:AD:DP:GQ:PL    0/1:34,37:71:99:1029,0,1169
9    129728336    rs480796    G    A    33.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.68;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    0/1:3,2:5:63.39:63,0,110
9    129740101    rs10819259    G    T    407.93    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.577;DB;DP=27;Dels=0.04;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;MQRankSum=0.752;QD=14.57;ReadPosRankSum=0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    0/1:13,14:27:99:438,0,456
9    129814981    rs62580846    A    T    36.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:67,0,32
9    129831455    rs3832609    AC    A    923.19    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=3.788;DB;DP=43;FS=7.143;HRun=2;HaplotypeScore=105.1527;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=0.062;QD=21.47;ReadPosRankSum=1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    0/1:17,26:43:99:962,0,673
9    129831659    rs1281158    T    A    1605.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;QD=31.49;SNPEFF_AMINO_ACID_CHANGE=F212I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_129831509_129832276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373439    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1639,132,0
9    129853825    rs79053350    C    A    734.18    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=40;Dels=0.0;FS=3.716;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.793;QD=18.35;ReadPosRankSum=-0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373417    GT:AD:DP:GQ:PL    0/1:17,23:40:99:764,0,562
9    129854199    rs2297866    G    A    2831.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.62;DB;DP=206;DS;Dels=0.0;FS=0.532;HRun=0;HaplotypeScore=5.8188;MQ=58.76;MQ0=0;MQRankSum=0.559;QD=13.74;ReadPosRankSum=-0.295;SNPEFF_AMINO_ACID_CHANGE=D344;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_129853949_129854219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPTL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373425    GT:AD:DP:GQ:PL    0/1:103,103:206:99:2861,0,2736
9    129928600    rs946430    A    C    595.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.23;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    1/1:0,16:17:48.15:629,48,0
9    129930892    rs2297865    A    G    645.12    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.712;DB;DP=41;Dels=0.0;FS=3.096;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=15.73;ReadPosRankSum=-0.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    0/1:19,22:41:99:675,0,638
9    129940379    rs3739556    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
9    129940416    rs3739555    T    G    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
9    129945945    rs3780326    A    G    32.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:64,6,0
9    129959136    rs2248809    G    C    164.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
9    129961152    rs875382    C    T    300.41    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.003;QD=21.46;ReadPosRankSum=-2.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259351    GT:AD:DP:GQ:PL    0/1:4,10:14:99:330,0,128
9    130075672    rs2779714    C    T    1416.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446764    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1450,108,0
9    130094526    rs10987596    T    G    1342.37    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.323;DB;DP=116;Dels=0.0;FS=0.816;HRun=1;HaplotypeScore=0.8941;MQ=59.8;MQ0=0;MQRankSum=0.891;QD=11.57;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314904    GT:AD:DP:GQ:PL    0/1:63,53:116:99:1372,0,2020
9    130116358    rs3934537    A    G    65.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=3.332;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.14;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314904    GT:AD:DP:GQ:PL    0/1:5,3:8:95.15:95,0,177
9    130127691    rs34477788    C    CT    606.15    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=75;FS=6.247;HRun=11;HaplotypeScore=244.2324;IndelType=I;MQ=59.44;MQ0=0;MQRankSum=0.053;QD=8.08;ReadPosRankSum=0.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314904    GT:AD:DP:GQ:PL    0/1:42,27:75:99:645,0,453
9    130145624    rs3824415    G    A    31.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314904    GT:AD:DP:GQ:PL    0/1:3,2:5:61.73:62,0,109
9    130149403    rs4837149    G    A    1106.63    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.091;DB;DP=71;Dels=0.0;FS=2.167;HRun=0;HaplotypeScore=0.9159;MQ=59.35;MQ0=0;MQRankSum=-0.977;QD=15.59;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314904    GT:AD:DP:GQ:PL    0/1:32,39:71:99:1137,0,885
9    130151032    rs7848126    C    G    69.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314904    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,111
9    130155257    rs4074695    T    G    399.47    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.946;DB;DP=30;Dels=0.0;FS=10.017;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.157;QD=13.32;ReadPosRankSum=-0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497703    GT:AD:DP:GQ:PL    0/1:16,14:30:99:429,0,488
9    130155331    rs7864853    A    G    1146.05    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.152;DB;DP=80;Dels=0.0;FS=4.602;HRun=1;HaplotypeScore=0.5784;MQ=59.42;MQ0=0;MQRankSum=-2.268;QD=14.33;ReadPosRankSum=-0.682;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GARNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497703    GT:AD:DP:GQ:PL    0/1:36,44:80:99:1176,0,1160
9    130164818    rs3802367    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373350    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    130166382    rs10819287    C    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419917    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    130241822    rs1539569    T    C    196.34    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=17;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.306;QD=11.55;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRSAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300417    GT:AD:DP:GQ:PL    0/1:6,11:17:99:226,0,161
9    130242166    rs1539567    A    G    410.63    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.34;DB;DP=31;Dels=0.0;FS=8.695;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.415;QD=13.25;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=N318D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130242118_130242257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRSAM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300417    GT:AD:DP:GQ:PL    0/1:15,16:31:99:441,0,482
9    130243534    .    AT    A    44.71    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DP=42;FS=3.074;HRun=16;HaplotypeScore=195.3365;IndelType=D;MQ=58.0;MQ0=0;MQRankSum=1.786;QD=1.06;ReadPosRankSum=-0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRSAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300417    GT:AD:DP:GQ:PL    0/1:27,12:42:83.74:84,0,281
9    130258380    rs75171318    C    T    191    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.01;MQ0=0;MQRankSum=0.454;QD=10.05;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRSAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300417    GT:AD:DP:GQ:PL    0/1:11,8:19:99:221,0,332
9    130259618    rs2248822    A    C    317.48    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=35;Dels=0.0;FS=1.527;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.382;QD=9.07;ReadPosRankSum=0.783;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRSAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300417    GT:AD:DP:GQ:PL    0/1:19,16:35:99:347,0,589
9    130287287    rs3765602    C    A    63.43    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=5.77;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373312    GT:AD:DP:GQ:PL    0/1:8,3:11:93.43:93,0,269
9    130340944    rs4266744    C    T    152.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373314    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
9    130341095    rs4240419    C    T    2463.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373314    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2496,184,0
9    130341253    rs4240420    A    G    4613.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=35.49;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_130341201_130341268;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373314    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4613,343,0
9    130341359    rs4240421    A    G    877.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9652;MQ=59.2;MQ0=0;QD=30.25;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373314    GT:AD:DP:GQ:PL    1/1:0,29:29:69.22:910,69,0
9    130341510    rs1573175    C    T    79.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.56;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373314    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
9    130413879    rs138763389    T    C    318.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=9.66;ReadPosRankSum=-2.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373299    GT:AD:DP:GQ:PL    0/1:16,16:33:99:349,0,399
9    130425777    rs7036307    C    T    118.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373299    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
9    130475011    rs522328    T    C    597.16    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=45;Dels=0.0;FS=2.772;HRun=0;HaplotypeScore=0.734;MQ=58.97;MQ0=0;MQRankSum=0.694;QD=13.27;ReadPosRankSum=1.497;SNPEFF_AMINO_ACID_CHANGE=S36;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130474169_130475154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf117;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373293    GT:AD:DP:GQ:PL    0/1:24,21:45:99:627,0,627
9    130475442    rs497632    A    C    356.38    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=28;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=1.581;MQ=59.17;MQ0=0;MQRankSum=-1.06;QD=12.73;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=Y483S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130475299_130475485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf117;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373295    GT:AD:DP:GQ:PL    0/1:13,15:28:99:386,0,346
9    130477768    rs504434    G    A    241.47    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.684;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.22;QD=13.42;ReadPosRankSum=0.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373295    GT:AD:DP:GQ:PL    0/1:7,11:18:99:271,0,246
9    130485618    rs537881    G    A    212.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=17.7;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTRH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419060    GT:AD:DP:GQ:PL    0/1:4,8:12:99:242,0,130
9    130486384    rs836333    C    T    44.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.973;MQ=49.96;MQ0=0;MQRankSum=-0.358;QD=8.94;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTRH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419060    GT:AD:DP:GQ:PL    0/1:2,3:5:58.70:75,0,59
9    130488494    rs538927    C    T    463.77    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.983;DB;DP=33;Dels=0.0;FS=6.207;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=14.05;ReadPosRankSum=-0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316259    GT:AD:DP:GQ:PL    0/1:15,18:33:99:494,0,498
9    130489104    .    ACAAGC    A    171.85    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DP=20;FS=0.0;HRun=0;HaplotypeScore=268.3663;IndelType=D;MQ=44.1;MQ0=0;MQRankSum=-2.887;QD=8.59;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336067    GT:AD:DP:GQ:PL    0/1:15,5:20:99:211,0,966
9    130489189    rs578997    C    T    846.57    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.553;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.272;QD=14.11;ReadPosRankSum=0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336067    GT:AD:DP:GQ:PL    0/1:29,31:60:99:877,0,850
9    130489558    rs472144    A    G    141.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.299;QD=10.08;ReadPosRankSum=-0.91;SNPEFF_AMINO_ACID_CHANGE=K304;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130489549_130489876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373288    GT:AD:DP:GQ:PL    0/1:7,7:14:99:171,0,198
9    130491998    rs557630    A    G    215.89    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=11.36;ReadPosRankSum=-0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336067    GT:AD:DP:GQ:PL    0/1:10,9:19:99:246,0,333
9    130492039    rs557749    G    A    136.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.098;QD=13.67;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336067    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,166
9    130493513    rs482095    A    G    307.23    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.155;DB;DP=29;Dels=0.0;FS=1.73;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=2.015;QD=10.59;ReadPosRankSum=0.155;SNPEFF_AMINO_ACID_CHANGE=K817;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130492915_130493879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373289    GT:AD:DP:GQ:PL    0/1:17,12:29:99:337,0,588
9    130493724    rs505268    C    T    496.95    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.898;DB;DP=36;Dels=0.0;FS=7.272;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.158;QD=13.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336067    GT:AD:DP:GQ:PL    0/1:17,19:36:99:527,0,475
9    130494667    rs534652    G    A    34.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316259    GT:AD:DP:GQ:PL    0/1:2,2:4:58.45:64,0,58
9    130494957    rs538066    T    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.06;SNPEFF_AMINO_ACID_CHANGE=K203E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130494843_130494970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373284    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
9    130495633    rs564754    C    G    278.13    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.153;DB;DP=29;Dels=0.0;FS=2.139;HRun=0;HaplotypeScore=1.9866;MQ=59.2;MQ0=0;MQRankSum=1.811;QD=9.59;ReadPosRankSum=-1.768;SNPEFF_AMINO_ACID_CHANGE=W208C;SNPEFF_CODON_CHANGE=tgG/tgC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130493804_130495839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373281    GT:AD:DP:GQ:PL    0/1:14,15:29:99:308,0,418
9    130496415    rs482712    G    A    165.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=14;Dels=0.0;FS=6.803;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.968;QD=11.8;ReadPosRankSum=1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314830    GT:AD:DP:GQ:PL    0/1:8,6:14:99:195,0,248
9    130504070    rs514024    G    A    900    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=26.47;SNPEFF_AMINO_ACID_CHANGE=A341;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130504067_130504238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429553    GT:AD:DP:GQ:PL    1/1:0,34:34:69.22:933,69,0
9    130523700    .    T    G    73.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5115;MQ=55.21;MQ0=0;MQRankSum=-0.48;QD=7.37;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314830    GT:AD:DP:GQ:PL    0/1:2,8:10:7.67:103,0,8
9    130524817    rs3962613    C    T    481.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314830    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:515,42,0
9    130587052    .    A    AGGGAGG    510.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DP=9;FS=5.441;HRun=0;HaplotypeScore=55.4117;IndelType=I;MQ=40.92;MQ0=0;MQRankSum=-0.742;QD=56.77;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462196    GT:AD:DP:GQ:PL    0/1:3,6:9:45.78:550,0,46
9    130630233    rs4226    G    T    260.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223836    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:293,21,0
9    130630639    rs913986    A    G    142.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.47;SNPEFF_AMINO_ACID_CHANGE=P159;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130630600_130630791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373156    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
9    130634944    rs743537    T    C    335.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.712;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.23;MQ0=0;MQRankSum=0.574;QD=11.17;ReadPosRankSum=-0.804;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223836    GT:AD:DP:GQ:PL    0/1:15,15:30:99:365,0,429
9    130635540    rs2767398    A    G    168.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223836    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
9    130648680    rs913983    G    A    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447681    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
9    130649111    rs4837202    G    A    427.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447681    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:461,33,0
9    130652800    rs2281897    G    A    174.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447681    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
9    130657020    rs5900777    GC    G    1011.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=5;HaplotypeScore=81.5863;IndelType=D;MQ=60.63;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494611    GT:AD:DP:GQ:PL    1/1:1,31:32:93.27:1053,93,0
9    130670532    rs3818509    C    T    148.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361444    GT:AD:DP:GQ:PL    1/1:0,8:9:15.04:181,15,0
9    130670652    rs1043012    A    G    990.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361444    GT:AD:DP:GQ:PL    1/1:0,33:33:78.22:1024,78,0
9    130670903    rs10760511    C    A    691.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483438    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:724,57,0
9    130672106    rs7026378    A    G    87.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483438    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
9    130672221    rs10739700    C    T    447.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.504;QD=29.86;ReadPosRankSum=-1.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483438    GT:AD:DP:GQ:PL    1/1:1,14:15:36.11:481,36,0
9    130690412    rs10760515    G    C    111.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.29;SNPEFF_AMINO_ACID_CHANGE=A122;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130690344_130690498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5KL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388747    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:144,12,0
9    130698029    rs7997    G    C    1447.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.48;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=T76S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130697378_130698059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314392    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1481,108,0
9    130698043    rs6781    A    G    1374.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=30.55;SNPEFF_AMINO_ACID_CHANGE=Y71;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130697378_130698059;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314392    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1408,108,0
9    130699917    rs2274424    G    A    253.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300434    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:286,24,0
9    130700251    rs6478802    T    C    237.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300434    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
9    130707081    rs2274426    A    G    877.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_AMINO_ACID_CHANGE=D196;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130707056_130707177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373084    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:911,69,0
9    130710726    rs4837212    A    G    1099.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=58.74;MQ0=0;QD=29.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493175    GT:AD:DP:GQ:PL    1/1:0,35:37:87.25:1133,87,0
9    130710791    rs4837213    T    C    391.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=24.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493175    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:424,36,0
9    130715922    rs2417062    A    G    1340.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3102;MQ=60.0;MQ0=0;QD=30.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM102A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373095    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1373,105,0
9    130829039    rs1539350    A    G    802.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.76;MQ0=0;QD=29.73;SNPEFF_AMINO_ACID_CHANGE=G114;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130828870_130829600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAIF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373078    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:836,69,0
9    130829564    rs7852659    C    T    137.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=27.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466139    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:170,15,0
9    130854052    rs10733689    C    A    1011.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373068    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1044,78,0
9    130854083    rs10739711    G    C    1616.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.26;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373068    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1650,123,0
9    130854127    rs10739712    A    G    2680.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.08;MQ0=0;QD=31.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373068    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2713,223,0
9    130854530    rs10117089    T    C    136.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373066    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:170,15,0
9    130860866    rs947624    T    C    1274.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.41;SNPEFF_AMINO_ACID_CHANGE=Y7;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130860583_130861004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373064    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1308,99,0
9    130861039    rs947623    A    G    1690.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373064    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1724,129,0
9    130864676    rs7859709    T    C    776.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=27.74;SNPEFF_AMINO_ACID_CHANGE=I134;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130864649_130864760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373064    GT:AD:DP:GQ:PL    1/1:0,27:28:60.19:810,60,0
9    130868312    rs7864867    G    C    991.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445012    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1025,75,0
9    130868831    rs1418420    T    C    1075.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=30.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445012    GT:AD:DP:GQ:PL    1/1:0,35:35:87.26:1108,87,0
9    130869499    rs4837239    A    T    937.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445012    GT:AD:DP:GQ:PL    1/1:0,32:33:84.17:971,84,0
9    130883511    rs2040004    C    T    388.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_AMINO_ACID_CHANGE=A158;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130883105_130883552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGES2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277462    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:421,30,0
9    130884753    rs13283456    C    T    428.73    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=10.72;ReadPosRankSum=-1.676;SNPEFF_AMINO_ACID_CHANGE=R107H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_130884641_130884758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGES2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277462    GT:AD:DP:GQ:PL    0/1:21,19:40:99:459,0,513
9    130886906    rs4837241    A    G    543.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGES2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485237    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:576,42,0
9    130889571    rs4837242    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGES2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277462    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    130889600    rs4837243    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGES2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277462    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    130889705    rs4837244    G    A    205.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGES2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277462    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
9    130914170    rs11794980    C    G    1095.69    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.21;DB;DP=65;Dels=0.0;FS=8.214;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=1.257;QD=16.86;ReadPosRankSum=0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487719    GT:AD:DP:GQ:PL    0/1:25,40:65:99:1126,0,706
9    130914434    rs2232629    A    G    1543.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487719    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1577,126,0
9    130931586    rs10987905    C    A    422.56    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.371;DB;DP=29;Dels=0.0;FS=4.821;HRun=0;HaplotypeScore=0.9665;MQ=59.2;MQ0=0;MQRankSum=1.506;QD=14.57;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277465    GT:AD:DP:GQ:PL    0/1:15,14:29:99:453,0,503
9    130932396    rs144699223    AAC    A    520.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.331;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=93.3859;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=-0.62;QD=18.58;ReadPosRankSum=-0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277465    GT:AD:DP:GQ:PL    0/1:14,14:28:99:559,0,728
9    130940822    rs3892074    C    T    704.06    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=3.306;DB;DP=45;Dels=0.0;FS=3.577;HRun=2;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.512;QD=15.65;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324544    GT:AD:DP:GQ:PL    0/1:19,26:45:99:734,0,501
9    130941741    rs11788797    C    G    181.24    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.13;QD=7.88;ReadPosRankSum=-0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324544    GT:AD:DP:GQ:PL    0/1:15,8:23:99:211,0,503
9    130942972    rs45585631    T    C    562.19    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=37;Dels=0.0;FS=6.365;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.079;QD=15.19;ReadPosRankSum=-2.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420484    GT:AD:DP:GQ:PL    0/1:18,19:37:99:592,0,622
9    131001846    rs56084933    CGT    C    166.53    PASS    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=76;FS=0.0;HRun=0;HaplotypeScore=410.5332;IndelType=D;MQ=55.17;MQ0=0;MQRankSum=0.893;QD=2.16;ReadPosRankSum=1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341179    GT:AD:DP:GQ:PL    0/1:64,13:76:99:206,0,224
9    131010726    rs2302425    A    G    117.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393589    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:150,15,0
9    131011174    rs62587117    T    C    291.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=36.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393589    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:325,24,0
9    131011200    rs62587118    G    A    167.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393589    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
9    131012256    rs12343000    T    C    623.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393589    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:657,48,0
9    131015329    rs2267957    G    T    475.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441149    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:509,39,0
9    131019738    rs2240961    T    C    1368.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.34;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=R186G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131019648_131019804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342583    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1401,114,0
9    131020795    rs112603354    GCCT    G    387.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=60.0075;IndelType=D;MQ=63.51;MQ0=0;QD=25.84;SNPEFF_AMINO_ACID_CHANGE=EA715A;SNPEFF_CODON_CHANGE=gaggcg/gcg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_9_131020734_131020849;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421699    GT:AD:DP:GQ:PL    1/1:5,10:15:30.10:430,30,0
9    131023105    rs12347709    A    G    1669.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=29.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450617    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1702,129,0
9    131023141    rs12338625    C    T    1274.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=59.36;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450617    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1307,102,0
9    131024602    rs111944122    TAAAAC    T    238.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=30.1562;IndelType=D;MQ=57.52;MQ0=0;QD=47.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342583    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:280,15,0
9    131027963    rs12335848    A    G    1657.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=S251;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131027864_131027970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421699    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1690,132,0
9    131028226    rs12345218    G    A    4067.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342583    GT:AD:DP:GQ:PL    1/1:0,111:111:99:4068,298,0
9    131029835    rs145144414    CCT    C    507.77    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=4.889;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=134.8772;IndelType=D;MQ=60.81;MQ0=0;MQRankSum=-0.028;QD=12.69;ReadPosRankSum=-0.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342583    GT:AD:DP:GQ:PL    0/1:25,15:40:99:547,0,1329
9    131038401    rs16930333    T    A    2206.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWI5;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2239,172,0
9    131085373    rs3003601    G    C    420.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.07;SNPEFF_AMINO_ACID_CHANGE=G50A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131085295_131085426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300452    GT:AD:DP:GQ:PL    1/1:0,14:14:42.08:454,42,0
9    131193665    rs1009850    A    C    209.71    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=23;Dels=0.0;FS=2.006;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.535;QD=9.12;ReadPosRankSum=0.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420512    GT:AD:DP:GQ:PL    0/1:14,9:23:99:240,0,441
9    131235321    rs4512487    A    G    707.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_AMINO_ACID_CHANGE=R122G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131235192_131235321;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535026    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:740,54,0
9    131247927    .    T    A    84.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=21.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535026    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:114,0,30
9    131250084    rs59092155    AC    A    234.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.393;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=98.0278;IndelType=D;MQ=57.66;MQ0=0;MQRankSum=1.393;QD=23.44;ReadPosRankSum=0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535026    GT:AD:DP:GQ:PL    1/1:1,9:10:22:276,22,0
9    131250086    rs148902913    AC    A    209.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.393;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=100.0595;IndelType=D;MQ=57.66;MQ0=0;MQRankSum=1.393;QD=20.9;ReadPosRankSum=0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535026    GT:AD:DP:GQ:PL    1/1:1,8:10:17:251,17,0
9    131260563    rs10819391    T    C    207.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372791    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
9    131287352    rs10988014    C    T    205.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309971    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
9    131295731    .    AGG    A    160.88    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=2.167;DP=33;FS=3.31;HRun=2;HaplotypeScore=393.8326;IndelType=D;MQ=40.95;MQ0=0;MQRankSum=-2.393;QD=4.88;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309971    GT:AD:DP:GQ:PL    0/1:26,6:33:99:200,0,356
9    131300143    rs7048583    G    A    132.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494417    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
9    131331320    rs2152833    C    T    162.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
9    131337260    rs78197797    A    G    146.89    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=16.32;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,135
9    131337302    rs2297767    C    T    251.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
9    131337389    rs2297768    C    T    1626.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.03;MQ0=0;QD=37.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1660,120,0
9    131337661    rs2297769    A    C    833.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:867,63,0
9    131340306    rs4837280    A    G    786.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:820,66,0
9    131340639    rs1890103    T    C    513.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:547,42,0
9    131345685    rs118148397    A    C    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472211    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
9    131346218    rs10760566    A    C    1647.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_AMINO_ACID_CHANGE=A721;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131346067_131346248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1681,126,0
9    131346479    rs4240431    A    G    715.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472211    GT:AD:DP:GQ:PL    1/1:0,25:25:66.18:748,66,0
9    131347165    rs4836615    G    A    825.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.46;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472211    GT:AD:DP:GQ:PL    1/1:0,26:26:66.19:858,66,0
9    131347169    rs4837284    C    T    853.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.56;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472211    GT:AD:DP:GQ:PL    1/1:0,27:27:69.20:886,69,0
9    131349773    rs7027388    G    A    337.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:371,27,0
9    131353544    rs10819419    A    G    98.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:131,12,0
9    131353567    rs10819420    C    G    139.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:173,15,0
9    131353989    rs3814530    G    A    569.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:603,45,0
9    131360750    rs2227864    C    T    500.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=L1142;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131360679_131360783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372719    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:534,39,0
9    131365576    rs6478841    C    G    117.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475367    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
9    131366070    rs4837289    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475367    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:79,6,0
9    131370756    rs7357662    T    C    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461855    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
9    131374165    rs7024498    C    G    684.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=29.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461855    GT:AD:DP:GQ:PL    1/1:0,23:23:54.17:718,54,0
9    131375701    rs1415568    A    G    1374.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=L1670;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131375660_131375764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372719    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1407,102,0
9    131379967    rs2227862    C    T    1386.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=T1777;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131379919_131380039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372719    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1420,105,0
9    131380149    rs3750332    C    G    1042.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=26.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476825    GT:AD:DP:GQ:PL    1/1:0,39:40:96.18:1076,96,0
9    131380994    rs4837290    T    C    207.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=29.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476825    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:240,18,0
9    131388643    rs3737308    C    T    3491.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.63;DB;DP=105;Dels=0.0;FS=5.172;HRun=0;HaplotypeScore=1.864;MQ=59.34;MQ0=0;MQRankSum=0.442;QD=33.26;ReadPosRankSum=0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491712    GT:AD:DP:GQ:PL    1/1:1,103:105:99:3492,230,0
9    131389060    rs10694437    C    CAA    385.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=15.0725;IndelType=I;MQ=60.0;MQ0=0;QD=55.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491712    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:427,21,0
9    131392553    rs7866175    G    A    2926.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9775;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491712    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2960,217,0
9    131394297    rs10760569    A    G    285.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372721    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
9    131397479    rs4837291    G    A    863.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_AMINO_ACID_CHANGE=T291;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131397371_131397538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372715    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:896,66,0
9    131398343    rs947182    T    A    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358161    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
9    131398636    rs10760570    C    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_AMINO_ACID_CHANGE=Q200;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131398197_131398717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451652    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    131403096    rs2298045    A    G    516.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.69;SNPEFF_AMINO_ACID_CHANGE=Y103;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131402970_131403218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372715    GT:AD:DP:GQ:PL    1/1:0,18:18:45.10:549,45,0
9    131418828    rs4837292    A    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_AMINO_ACID_CHANGE=W45G;SNPEFF_CODON_CHANGE=Tgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131418820_131418960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419989    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    131453331    rs4837293    G    A    2111.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322030    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2144,160,0
9    131454120    rs3750330    C    T    762.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.67;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322030    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:796,63,0
9    131454818    rs6478846    T    C    131.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466009    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
9    131455760    rs10739728    C    T    74.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=24.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466009    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
9    131455903    rs4836618    C    T    339.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.69;MQ0=0;MQRankSum=1.393;QD=33.95;ReadPosRankSum=-0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466009    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:372,27,0
9    131456385    rs10637043    G    GTA    1114.15    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=40;FS=1.814;HRun=0;HaplotypeScore=128.1568;IndelType=I;MQ=58.18;MQ0=0;MQRankSum=-1.376;QD=27.85;ReadPosRankSum=0.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466009    GT:AD:DP:GQ:PL    0/1:14,24:40:99:1153,0,101
9    131475951    rs4837297    T    C    551.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291906    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:584,48,0
9    131476205    rs2417124    T    C    220.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291906    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:253,21,0
9    131477544    rs7854055    G    A    1128.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291906    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1161,87,0
9    131478876    rs10819432    C    T    69.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=13.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372663    GT:AD:DP:GQ:PL    1/1:0,4:5:9.02:102,9,0
9    131479023    rs10739729    T    C    1940.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.95;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372663    GT:AD:DP:GQ:PL    1/1:0,56:57:99:1973,153,0
9    131482467    rs3750325    T    C    542.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=31.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485301    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:576,45,0
9    131483749    rs2900268    T    A    165.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.63;SNPEFF_AMINO_ACID_CHANGE=Q172L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131483148_131483781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372663    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
9    131483798    rs10988103    A    G    187.60    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=13;Dels=0.0;FS=4.15;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.545;QD=14.43;ReadPosRankSum=0.533;SNPEFF_AMINO_ACID_CHANGE=L165P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131483676_131483809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452105    GT:AD:DP:GQ:PL    0/1:5,8:13:99:218,0,135
9    131502112    rs2298044    A    G    647.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291900    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:681,54,0
9    131502440    rs3818931    G    C    74.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291900    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:107,9,0
9    131502460    rs7027146    G    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291900    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
9    131515547    rs8507    G    T    44.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=A214;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131515443_131515879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZER1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291900    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:75,0,23
9    131550722    rs1891076    C    G    2170    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.22;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223865    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2203,162,0
9    131553768    rs10760577    A    G    713.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223865    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:746,60,0
9    131554159    rs3793448    C    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000223865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    131565554    rs1572912    T    C    273.88    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=23;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=1.999;MQ=60.0;MQ0=0;MQRankSum=-0.899;QD=11.91;ReadPosRankSum=0.341;SNPEFF_AMINO_ACID_CHANGE=V190A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131565529_131565739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372648    GT:AD:DP:GQ:PL    0/1:13,10:23:99:304,0,392
9    131568363    rs2417127    A    G    207.43    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=2.817;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=17.29;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466056    GT:AD:DP:GQ:PL    0/1:5,7:12:99:237,0,153
9    131570178    rs45609236    T    C    390.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.375;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.172;QD=11.5;ReadPosRankSum=0.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466056    GT:AD:DP:GQ:PL    0/1:17,17:34:99:421,0,553
9    131570183    rs7862546    C    G    1069.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466056    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1103,87,0
9    131570274    rs3750323    C    T    107.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.19;MQ0=0;MQRankSum=0.361;QD=11.92;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466056    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,144
9    131585069    rs2280843    A    G    166.54    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=12.81;ReadPosRankSum=-0.101;SNPEFF_AMINO_ACID_CHANGE=S368P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131584955_131585112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf114;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372618    GT:AD:DP:GQ:PL    0/1:7,6:13:99:197,0,246
9    131585994    rs2997918    T    C    290.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466556    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
9    131586374    rs7033070    G    A    169.45    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=17;Dels=0.0;FS=5.426;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=9.97;ReadPosRankSum=0.635;SNPEFF_AMINO_ACID_CHANGE=A296;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131586368_131586453;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf114;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372618    GT:AD:DP:GQ:PL    0/1:10,7:17:99:199,0,237
9    131588652    rs2997914    T    C    919.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372642    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:953,72,0
9    131588813    rs6478853    C    G    501.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.256;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.321;QD=15.19;ReadPosRankSum=1.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372642    GT:AD:DP:GQ:PL    0/1:11,22:33:99:531,0,282
9    131588888    rs6478854    G    C    560.55    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.279;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.304;QD=13.04;ReadPosRankSum=-1.13;SNPEFF_AMINO_ACID_CHANGE=Q130E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131588880_131588908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf114;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372618    GT:AD:DP:GQ:PL    0/1:21,22:43:99:591,0,658
9    131589033    rs2997913    C    T    81.02    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=16.2;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372642    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:111,0,30
9    131589234    rs2977991    C    G    1484.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372642    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1518,123,0
9    131599008    rs2759009    C    T    440.57    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.501;DB;DP=34;Dels=0.0;FS=6.435;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.466;QD=12.96;ReadPosRankSum=-0.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416084    GT:AD:DP:GQ:PL    0/1:18,16:34:99:471,0,533
9    131599311    rs2997903    G    A    379.32    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.933;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.109;QD=18.06;ReadPosRankSum=-0.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416084    GT:AD:DP:GQ:PL    0/1:8,13:21:99:409,0,259
9    131600111    rs2280841    T    C    404.50    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.824;DB;DP=34;Dels=0.0;FS=1.573;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.645;QD=11.9;ReadPosRankSum=-1.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427720    GT:AD:DP:GQ:PL    0/1:14,20:34:99:434,0,449
9    131670919    rs3750319    T    C    336.67    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.572;DB;DP=30;Dels=0.0;FS=3.382;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=11.22;ReadPosRankSum=1.483;SNPEFF_AMINO_ACID_CHANGE=R492;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131669436_131671600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259324    GT:AD:DP:GQ:PL    0/1:18,12:30:99:367,0,548
9    131689361    rs751340    G    A    757.11    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.959;DB;DP=60;Dels=0.0;FS=0.99;HRun=0;HaplotypeScore=2.15;MQ=59.3;MQ0=0;MQRankSum=-0.434;QD=12.62;ReadPosRankSum=-0.51;SNPEFF_AMINO_ACID_CHANGE=A26;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131689317_131689475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308941    GT:AD:DP:GQ:PL    0/1:33,27:60:99:787,0,1015
9    131699847    rs12686860    G    A    33.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419552    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:63,0,33
9    131702891    rs2273866    A    G    544.43    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=59;Dels=0.0;FS=1.049;HRun=1;HaplotypeScore=0.8321;MQ=59.68;MQ0=0;MQRankSum=1.45;QD=9.23;ReadPosRankSum=-0.04;SNPEFF_AMINO_ACID_CHANGE=E193G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131702878_131702994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308941    GT:AD:DP:GQ:PL    0/1:37,22:59:99:574,0,1090
9    131735559    rs17452428    T    C    197.05    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=9.38;ReadPosRankSum=0.616;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356693    GT:AD:DP:GQ:PL    0/1:13,8:21:99:227,0,428
9    131745548    rs719703    T    C    975.83    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=4.666;DB;DP=62;Dels=0.0;FS=4.619;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.119;QD=15.74;ReadPosRankSum=0.104;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356693    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1006,0,849
9    131761437    rs2004632    A    G    72.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=2.881;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.04;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467044    GT:AD:DP:GQ:PL    0/1:8,4:12:99:102,0,259
9    131761659    rs2302813    A    G    59.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.54;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467044    GT:AD:DP:GQ:PL    0/1:4,3:7:89.75:90,0,133
9    131761899    rs2302811    A    G    139.24    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=1.365;DB;DP=23;Dels=0.0;FS=5.746;HRun=0;HaplotypeScore=0.0;MQ=55.86;MQ0=0;MQRankSum=-0.385;QD=6.05;ReadPosRankSum=0.665;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467044    GT:AD:DP:GQ:PL    0/1:17,6:23:99:169,0,470
9    131764969    rs12683155    A    G    177.82    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.791;QD=13.68;ReadPosRankSum=1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487952    GT:AD:DP:GQ:PL    0/1:7,6:13:99:208,0,249
9    131765378    rs2302810    T    C    36.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=7.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487952    GT:AD:DP:GQ:PL    0/1:2,3:5:27.95:67,0,28
9    131767668    rs2287363    A    C    796.16    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=1.949;DB;DP=43;Dels=0.0;FS=1.335;HRun=1;HaplotypeScore=0.8321;MQ=59.46;MQ0=0;MQRankSum=0.956;QD=18.52;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=S1421;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131767582_131767809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356693    GT:AD:DP:GQ:PL    0/1:15,28:43:99:826,0,425
9    131771505    rs1129098    C    T    57.24    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=4.77;ReadPosRankSum=-0.741;SNPEFF_AMINO_ACID_CHANGE=P299;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131771385_131771625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GLB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416629    GT:AD:DP:GQ:PL    0/1:7,5:12:87.23:87,0,196
9    131772389    rs3750340    T    G    478.25    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.304;DB;DP=37;Dels=0.0;FS=7.42;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=12.93;ReadPosRankSum=0.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356693    GT:AD:DP:GQ:PL    0/1:19,18:37:99:508,0,416
9    131773048    .    C    T    256.25    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.755;DP=19;Dels=0.0;FS=14.15;HRun=0;HaplotypeScore=0.7887;MQ=57.28;MQ0=0;MQRankSum=-1.674;QD=13.49;ReadPosRankSum=1.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356693    GT:AD:DP:GQ:PL    0/1:9,10:19:99:286,0,202
9    131846774    rs10988199    G    A    556.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.233;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.233;QD=23.2;ReadPosRankSum=1.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOLPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372546    GT:AD:DP:GQ:PL    0/1:6,18:24:99:587,0,164
9    131846957    rs11541836    T    C    2957.60    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.687;DB;DP=187;Dels=0.0;FS=0.585;HRun=1;HaplotypeScore=2.4447;MQ=59.9;MQ0=0;MQRankSum=0.292;QD=15.82;ReadPosRankSum=-0.606;SNPEFF_AMINO_ACID_CHANGE=S29;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131846947_131847047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOLPP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372546    GT:AD:DP:GQ:PL    0/1:79,108:187:99:2988,0,2188
9    131848382    rs7859344    T    A    398.06    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.74;DB;DP=22;Dels=0.0;FS=2.046;HRun=0;HaplotypeScore=1.7005;MQ=60.0;MQ0=0;MQRankSum=2.628;QD=18.09;ReadPosRankSum=-1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOLPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372546    GT:AD:DP:GQ:PL    0/1:8,14:22:99:428,0,237
9    131851183    rs144034480    G    C    62.91    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.773;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.234;QD=2.74;ReadPosRankSum=-1.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOLPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372546    GT:AD:DP:GQ:PL    0/1:16,7:23:92.90:93,0,500
9    131857630    rs2229419    C    T    154.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=17.16;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458362    GT:AD:DP:GQ:PL    0/1:3,6:9:99:184,0,101
9    131860901    rs3118635    G    T    1663.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=L291M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131860810_131860929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351352    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1697,129,0
9    131862073    rs3118638    G    A    366.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415948    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:399,30,0
9    131862705    rs68176003    AGG    A    417.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=80.9895;IndelType=D;MQ=61.94;MQ0=0;QD=37.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415948    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:459,30,0
9    131862730    rs10819462    C    T    141.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=-0.583;QD=11.75;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415948    GT:AD:DP:GQ:PL    0/1:6,6:12:99:171,0,163
9    131862781    rs10988204    G    A    280.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.707;DB;DP=22;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.328;QD=12.74;ReadPosRankSum=-1.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415948    GT:AD:DP:GQ:PL    0/1:11,11:22:99:310,0,276
9    131863079    rs7866897    T    C    85.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415948    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
9    131864950    rs746873    C    T    404.27    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=30;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.153;QD=13.48;ReadPosRankSum=-0.327;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393384    GT:AD:DP:GQ:PL    0/1:14,16:30:99:434,0,450
9    131865027    rs746872    C    T    62.38    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.24;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393384    GT:AD:DP:GQ:PL    0/1:7,3:10:92.37:92,0,263
9    131865493    rs3124498    C    T    74.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=9.34;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393384    GT:AD:DP:GQ:PL    0/1:5,3:8:98.37:105,0,98
9    131866388    rs2768630    C    T    38.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.72;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393384    GT:AD:DP:GQ:PL    0/1:3,2:5:62.16:69,0,62
9    131871144    rs2768629    A    G    94.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318080    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:127,9,0
9    131873222    rs3814492    G    A    173.06    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=24;Dels=0.0;FS=7.83;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.144;QD=7.21;ReadPosRankSum=0.818;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464290    GT:AD:DP:GQ:PL    0/1:15,9:24:99:203,0,264
9    131873256    rs3118625    A    C    425.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9461;MQ=57.31;MQ0=0;MQRankSum=-0.109;QD=12.17;ReadPosRankSum=-0.153;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464290    GT:AD:DP:GQ:PL    0/1:16,16:35:99:456,0,411
9    131873638    rs3124501    T    G    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358994    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    131882761    rs9409311    T    C    1954.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3561;MQ=55.04;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337738    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1987,153,0
9    131882961    rs3739843    G    A    386.60    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.2;QD=16.11;ReadPosRankSum=-0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337738    GT:AD:DP:GQ:PL    0/1:10,14:24:99:417,0,316
9    131885279    rs3118628    G    A    740.86    HaplotypeScoreFilter13    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=66;Dels=0.0;FS=5.267;HRun=0;HaplotypeScore=36.7741;MQ=50.55;MQ0=0;MQRankSum=2.557;QD=11.23;ReadPosRankSum=2.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337738    GT:AD:DP:GQ:PL    0/1:36,30:66:99:771,0,465
9    131885286    .    T    G    49.49    HaplotypeScoreFilter13;QDFilter2    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.892;DP=66;Dels=0.01;FS=19.374;HRun=7;HaplotypeScore=36.8809;MQ=50.7;MQ0=0;MQRankSum=-1.543;QD=0.74;ReadPosRankSum=1.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337738    GT:AD:DP:GQ:PL    0/1:29,36:66:79.48:79,0,725
9    131885534    rs3118629    C    T    126.48    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.689;QD=10.54;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337738    GT:AD:DP:GQ:PL    0/1:7,5:12:99:156,0,204
9    131891152    rs7023900    C    G    161.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=16.19;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337738    GT:AD:DP:GQ:PL    0/1:4,6:10:99:192,0,134
9    131896999    rs3124509    C    T    61.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=6.8;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417504    GT:AD:DP:GQ:PL    0/1:5,4:9:91.23:91,0,186
9    131897221    rs7019373    C    T    133.37    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.33;MQ0=0;MQRankSum=0.667;QD=9.53;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414331    GT:AD:DP:GQ:PL    0/1:9,5:14:99:163,0,261
9    131898485    rs7862210    A    T    68.32    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.77;MQ0=0;MQRankSum=1.754;QD=9.76;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414331    GT:AD:DP:GQ:PL    0/1:4,3:7:98.32:98,0,135
9    131898880    rs1536548    A    G    1928.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=32.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414331    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1962,147,0
9    131899846    rs3118631    T    C    630.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414331    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:663,48,0
9    131904593    rs3124513    C    T    52.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.06;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337738    GT:AD:DP:GQ:PL    0/1:1,3:4:27.99:82,0,28
9    131904608    rs3124514    C    T    98.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.47;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337738    GT:AD:DP:GQ:PL    0/1:2,4:6:63.18:129,0,63
9    131905814    rs913272    T    C    132.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417728    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:165,15,0
9    131909736    rs2480452    C    T    370.90    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.568;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4115;MQ=60.0;MQ0=0;MQRankSum=-0.038;QD=11.59;ReadPosRankSum=1.095;SNPEFF_AMINO_ACID_CHANGE=S103L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_131909666_131911225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347048    GT:AD:DP:GQ:PL    0/1:17,15:32:99:401,0,424
9    131992861    rs716548    C    A    766.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.317;QD=30.66;ReadPosRankSum=1.179;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL158151.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408065    GT:AD:DP:GQ:PL    1/1:1,24:25:36.59:800,37,0
9    132084885    rs913771    A    G    434.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf106;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316786    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:467,36,0
9    132377728    rs918166    C    T    891.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9469;MQ=58.39;MQ0=0;QD=30.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372478    GT:AD:DP:GQ:PL    1/1:0,29:29:69.22:925,69,0
9    132377900    rs918165    C    T    1192.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.59;SNPEFF_AMINO_ACID_CHANGE=R248K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132377763_132377926;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372478    GT:AD:DP:GQ:PL    1/1:0,39:39:93.30:1226,93,0
9    132395245    rs2287296    T    C    666.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277458    GT:AD:DP:GQ:PL    1/1:0,21:21:60.16:700,60,0
9    132395338    rs10114250    G    A    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277458    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
9    132396281    rs10819551    G    C    371.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=26.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277458    GT:AD:DP:GQ:PL    1/1:0,13:14:30.10:405,30,0
9    132396655    rs1558873    A    G    569.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277458    GT:AD:DP:GQ:PL    1/1:0,20:20:45.14:602,45,0
9    132397239    rs3088095    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277458    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
9    132401824    rs2302780    G    A    134.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372480    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
9    132402908    rs2241247    C    G    787.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_AMINO_ACID_CHANGE=V69;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132402820_132403001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277458    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:821,60,0
9    132404304    rs4837396    C    G    416.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_132404166_132404444;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277458    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:450,36,0
9    132515081    rs2241271    T    C    712.53    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.496;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8473;MQ=56.55;MQ0=0;MQRankSum=0.75;QD=14.84;ReadPosRankSum=0.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTGES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340607    GT:AD:DP:GQ:PL    0/1:18,30:48:99:743,0,543
9    132515247    rs11792431    G    A    600.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=35;Dels=0.0;FS=8.994;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.347;QD=16.68;ReadPosRankSum=-0.892;SNPEFF_AMINO_ACID_CHANGE=A15;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132515166_132515326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTGES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340607    GT:AD:DP:GQ:PL    0/1:14,21:35:99:631,0,463
9    132566666    rs7029757    G    A    1520.31    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=2.966;DB;DP=108;Dels=0.0;FS=11.896;HRun=0;HaplotypeScore=3.03;MQ=59.61;MQ0=0;MQRankSum=0.63;QD=14.08;ReadPosRankSum=-1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259339    GT:AD:DP:GQ:PL    0/1:48,59:108:99:1550,0,1457
9    132569442    rs2302820    G    A    604.02    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.895;DB;DP=45;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=0.734;MQ=58.97;MQ0=0;MQRankSum=-1.782;QD=13.42;ReadPosRankSum=1.828;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486372    GT:AD:DP:GQ:PL    0/1:23,22:45:99:634,0,781
9    132569750    rs11789668    C    G    251.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.368;QD=15.74;ReadPosRankSum=-1.838;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486372    GT:AD:DP:GQ:PL    0/1:8,8:16:99:282,0,275
9    132572629    rs1220509    T    G    80.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=50.65;MQ0=0;QD=10.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351698    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:112,9,0
9    132576665    rs13294595    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473604    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    132580686    rs13297609    G    C    317.81    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=16.73;ReadPosRankSum=-1.986;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473084    GT:AD:DP:GQ:PL    0/1:7,12:19:99:348,0,230
9    132585058    rs2296793    G    A    1071.59    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.594;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.377;MQ=60.0;MQ0=0;MQRankSum=0.116;QD=14.48;ReadPosRankSum=0.712;SNPEFF_AMINO_ACID_CHANGE=A82;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132584860_132585125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOR1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351698    GT:AD:DP:GQ:PL    0/1:36,38:74:99:1102,0,1131
9    132590690    rs71497496    C    CT    171.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=11;HaplotypeScore=15.5661;IndelType=I;MQ=62.65;MQ0=0;QD=21.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461539    GT:AD:DP:GQ:PL    1/1:1,7:8:21.04:213,21,0
9    132618312    rs4837416    T    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491053    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
9    132618408    rs4837417    G    A    128.07    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.978;QD=9.85;ReadPosRankSum=-1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491053    GT:AD:DP:GQ:PL    0/1:8,5:13:99:158,0,289
9    132618578    rs4836674    T    C    1444.91    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.961;DB;DP=132;Dels=0.0;FS=6.771;HRun=1;HaplotypeScore=7.336;MQ=59.16;MQ0=0;MQRankSum=1.662;QD=10.95;ReadPosRankSum=0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491053    GT:AD:DP:GQ:PL    0/1:78,54:132:99:1475,0,2203
9    132618807    rs7862315    G    A    176.51    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.093;QD=13.58;ReadPosRankSum=-1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491053    GT:AD:DP:GQ:PL    0/1:7,6:13:99:207,0,244
9    132620224    rs2417150    A    G    298.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.581;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.915;QD=11.96;ReadPosRankSum=0.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:15,10:25:99:329,0,471
9    132620364    rs10819568    T    C    362.11    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.515;DB;DP=50;Dels=0.0;FS=4.93;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.01;QD=7.24;ReadPosRankSum=-1.504;SNPEFF_AMINO_ACID_CHANGE=F57;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132620329_132620391;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:31,19:50:99:392,0,955
9    132620458    rs10819569    C    A    199.92    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=15.38;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:6,7:13:99:230,0,213
9    132620464    rs10760638    C    T    212.44    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=16.34;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:6,7:13:99:242,0,195
9    132620620    rs2174156    T    C    266.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.826;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=56.3;MQ0=0;MQRankSum=-0.353;QD=14.8;ReadPosRankSum=-2.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:9,9:18:99:296,0,309
9    132620707    rs2134601    T    C    585.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.689;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-0.198;QD=10.65;ReadPosRankSum=-0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:33,22:55:99:616,0,1075
9    132620990    rs2174157    T    C    1187.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7621;MQ=58.67;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494971    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1220,99,0
9    132623075    rs1503374    A    G    602.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7998;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494971    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:636,48,0
9    132623293    rs1503375    C    T    1048.44    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=4.975;DB;DP=93;Dels=0.0;FS=4.596;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.472;QD=11.27;ReadPosRankSum=-0.261;SNPEFF_AMINO_ACID_CHANGE=D136;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132623216_132623312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:53,40:93:99:1078,0,1355
9    132623868    rs10115249    T    C    526.79    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.612;DB;DP=50;Dels=0.0;FS=6.493;HRun=1;HaplotypeScore=2.7227;MQ=60.0;MQ0=0;MQRankSum=1.097;QD=10.54;ReadPosRankSum=-1.078;SNPEFF_AMINO_ACID_CHANGE=A158;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132623822_132623891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:24,26:50:99:557,0,754
9    132623917    rs10124224    C    A    435.13    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.038;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.129;QD=16.74;ReadPosRankSum=0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494971    GT:AD:DP:GQ:PL    0/1:12,14:26:99:465,0,321
9    132624023    rs10115279    T    C    44.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.67;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494971    GT:AD:DP:GQ:PL    0/1:1,2:3:17.65:74,0,18
9    132627480    rs913319    C    T    132.03    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.461;QD=10.16;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:7,6:13:99:162,0,223
9    132627723    rs913320    G    A    97.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=12.19;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:4,4:8:99:128,0,143
9    132630231    rs913325    A    G    303.63    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=16.87;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:8,10:18:99:334,0,268
9    132630664    rs67308408    TGAC    T    731.05    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=4.863;DB;DP=36;FS=1.686;HRun=0;HaplotypeScore=142.2154;IndelType=D;MQ=57.84;MQ0=0;MQRankSum=0.38;QD=20.31;ReadPosRankSum=-1.067;SNPEFF_AMINO_ACID_CHANGE=D358-;SNPEFF_CODON_CHANGE=gac/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_9_132630284_132630728;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:17,19:36:99:770,0,920
9    132631680    rs6478920    T    C    517.55    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.91;DB;DP=48;Dels=0.0;FS=1.141;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.727;QD=10.78;ReadPosRankSum=-1.039;SNPEFF_AMINO_ACID_CHANGE=L456;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132631589_132631704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:27,21:48:99:548,0,845
9    132632162    rs35124212    G    GC    465.77    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.289;DB;DP=21;FS=2.645;HRun=2;HaplotypeScore=84.7377;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.535;QD=22.18;ReadPosRankSum=1.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:8,13:21:99:505,0,166
9    132632178    rs62583580    C    T    141.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=7.88;ReadPosRankSum=-2.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:12,6:18:99:172,0,444
9    132632653    rs41279154    A    G    235.10    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DB;DP=27;Dels=0.0;FS=1.81;HRun=1;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=-0.527;QD=8.71;ReadPosRankSum=2.413;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491731    GT:AD:DP:GQ:PL    0/1:16,10:27:99:265,0,471
9    132635653    rs1809959    A    G    34.37    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.0;QD=3.12;ReadPosRankSum=0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491731    GT:AD:DP:GQ:PL    0/1:8,3:11:64.36:64,0,287
9    132635944    rs2296787    C    G    1023.29    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.612;DB;DP=85;Dels=0.0;FS=0.856;HRun=2;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=1.4;QD=12.04;ReadPosRankSum=0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491731    GT:AD:DP:GQ:PL    0/1:42,43:85:99:1053,0,1180
9    132636031    rs4332226    A    G    1235.68    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.366;DB;DP=79;Dels=0.0;FS=0.998;HRun=1;HaplotypeScore=7.0486;MQ=59.06;MQ0=0;MQRankSum=1.348;QD=15.64;ReadPosRankSum=0.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491731    GT:AD:DP:GQ:PL    0/1:36,43:79:99:1266,0,936
9    132636033    rs4415421    T    C    1129.48    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.834;DB;DP=79;Dels=0.0;FS=2.142;HRun=0;HaplotypeScore=6.3147;MQ=59.06;MQ0=0;MQRankSum=0.015;QD=14.3;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491731    GT:AD:DP:GQ:PL    0/1:36,42:79:99:1159,0,961
9    132636203    rs4332227    A    G    118.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491731    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
9    132636920    rs35899714    C    T    657.47    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DB;DP=51;Dels=0.0;FS=1.106;HRun=0;HaplotypeScore=0.5784;MQ=59.55;MQ0=0;MQRankSum=0.772;QD=12.89;ReadPosRankSum=0.987;SNPEFF_AMINO_ACID_CHANGE=H602;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132636855_132637035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315480    GT:AD:DP:GQ:PL    0/1:28,23:51:99:687,0,820
9    132657957    rs2047836    A    G    77.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
9    132658044    rs2047837    T    C    210.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
9    132662076    rs149093701    AGGAAGG    A    496.81    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=133.8591;IndelType=D;MQ=52.1;MQ0=0;MQRankSum=-2.177;QD=22.58;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462766    GT:AD:DP:GQ:PL    0/1:12,10:22:99:536,0,580
9    132662786    rs1023000    C    T    207.90    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=23;Dels=0.0;FS=4.419;HRun=1;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=-0.613;QD=9.04;ReadPosRankSum=1.001;SNPEFF_AMINO_ACID_CHANGE=S118N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132662705_132662826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443566    GT:AD:DP:GQ:PL    0/1:15,8:23:99:238,0,406
9    132671359    rs35180619    T    TG    595.69    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.91;DB;DP=45;FS=0.0;HRun=6;HaplotypeScore=90.9059;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.068;QD=13.24;ReadPosRankSum=-0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    0/1:25,20:45:99:635,0,491
9    132678195    rs7867211    G    A    982.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482107    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:1015,75,0
9    132685903    rs1923663    T    C    87.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
9    132686186    rs4836680    A    G    1172.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=37.82;SNPEFF_AMINO_ACID_CHANGE=H340;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132686123_132686218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    1/1:0,31:31:93.27:1205,93,0
9    132689671    rs4837429    A    G    5850.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.586;MQ=59.6;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    1/1:0,170:171:99:5851,445,0
9    132689784    rs4837430    T    C    804.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:837,66,0
9    132691667    rs2417159    T    C    171.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.07;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:204,18,0
9    132720720    rs11394970    G    GA    920.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=9;HaplotypeScore=90.5653;IndelType=I;MQ=62.36;MQ0=0;QD=29.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355681    GT:AD:DP:GQ:PL    1/1:1,30:31:87.24:963,87,0
9    132740531    rs6478934    T    C    185.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491905    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:218,18,0
9    132839747    rs41301535    T    C    63.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=10.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    0/1:2,4:6:69.42:93,0,69
9    132841700    rs35745047    G    A    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
9    132841808    rs6478942    G    C    287.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:321,24,0
9    132845689    rs7868870    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    132845986    rs10819597    T    C    146.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.625;QD=10.47;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    0/1:6,8:14:99:177,0,212
9    132848653    rs11399718    C    CT    1076.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=2;HaplotypeScore=51.2377;IndelType=I;MQ=59.95;MQ0=0;QD=39.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:1,26:27:78.26:1119,78,0
9    132854482    rs10988589    T    C    93.45    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=6.68;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462907    GT:AD:DP:GQ:PL    0/1:10,4:14:99:123,0,325
9    132862830    rs10081664    A    T    196.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=14.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,14:14:26.97:230,27,0
9    132862831    rs57006417    A    C    195.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=13.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,14:14:26.97:228,27,0
9    132863035    rs2277196    G    C    214.57    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.386;QD=15.33;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    0/1:6,8:14:99:245,0,211
9    132863158    rs3824540    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    132866883    rs7868997    T    C    229.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:263,21,0
9    132866906    rs887536    C    T    168.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
9    132872686    rs4837460    A    G    3167.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=L448;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_132872649_132872705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372406    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3201,235,0
9    132887249    rs11316087    TA    T    122.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=14;HaplotypeScore=31.1999;IndelType=D;MQ=61.34;MQ0=0;QD=15.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,8:8:23.80:164,24,0
9    132889631    rs4836690    G    A    210.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347136    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
9    132891113    rs2286794    G    A    559.97    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=46;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=-0.626;QD=12.17;ReadPosRankSum=-1.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483935    GT:AD:DP:GQ:PL    0/1:22,24:46:99:590,0,742
9    132891115    rs7853219    T    C    1441.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483935    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1474,114,0
9    132897231    rs1003416    G    A    104.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.0;ReadPosRankSum=2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493417    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,117
9    132963115    rs887534    T    G    1640.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=59.42;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372398    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1673,135,0
9    132963129    rs887535    G    A    2220.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.57;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372398    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2254,174,0
9    132963350    rs4837482    T    C    1451.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372398    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1484,120,0
9    132980035    rs2277198    G    A    1639.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372398    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1672,126,0
9    132985111    rs3829905    T    C    566.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493042    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:599,51,0
9    132985258    rs68053432    GC    G    137.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=31.1969;IndelType=D;MQ=57.05;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372398    GT:AD:DP:GQ:PL    1/1:0,6:5:15.05:179,15,0
9    133048501    rs6478957    G    A    131.73    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=7.32;ReadPosRankSum=0.251;SNPEFF_AMINO_ACID_CHANGE=R138H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133048467_133048589;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-88G17.6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415566    GT:AD:DP:GQ:PL    0/1:11,7:18:99:162,0,289
9    133057105    rs34014907    C    T    182.87    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.244;QD=15.24;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-88G17.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415566    GT:AD:DP:GQ:PL    0/1:5,7:12:99:213,0,142
9    133058892    rs34511011    G    A    90.85    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DB;DP=15;Dels=0.0;FS=5.611;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=6.06;ReadPosRankSum=0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-88G17.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415566    GT:AD:DP:GQ:PL    0/1:11,4:15:99:121,0,340
9    133069946    rs28435140    A    C    35.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-88G17.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415566    GT:AD:DP:GQ:PL    0/1:2,2:4:56.28:66,0,56
9    133259700    rs6597635    T    C    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    133260316    rs7858563    T    G    85.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487727    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
9    133263923    rs7849839    T    C    1374.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=57.91;MQ0=0;QD=29.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487727    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1407,114,0
9    133264059    rs35750041    GC    G    81.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=11;HaplotypeScore=41.2657;IndelType=D;MQ=57.56;MQ0=0;QD=11.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487727    GT:AD:DP:GQ:PL    1/1:1,6:7:14.98:123,15,0
9    133278395    rs41309952    G    C    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL354898.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277491    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
9    133280251    rs11244194    C    T    386.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL354898.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277491    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:419,33,0
9    133286172    rs7861815    C    T    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL354898.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277491    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:87,6,0
9    133294776    rs17146945    G    A    110.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428715    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
9    133301380    rs117467454    G    A    662.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428715    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:696,51,0
9    133301395    rs59977015    C    T    554.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=26.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428715    GT:AD:DP:GQ:PL    1/1:0,21:21:48.13:588,48,0
9    133305012    rs59218805    G    A    353.18    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=30;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.8321;MQ=59.59;MQ0=0;MQRankSum=0.415;QD=11.77;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=G466S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133304944_133305072;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428715    GT:AD:DP:GQ:PL    0/1:14,16:30:99:383,0,305
9    133305103    rs6597679    G    A    296.94    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=1.393;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.786;MQ=60.98;MQ0=0;MQRankSum=-1.741;QD=26.99;ReadPosRankSum=1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428715    GT:AD:DP:GQ:PL    0/1:1,9:11:1.46:326,0,1
9    133305157    rs112269985    T    G    238.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DB;DP=16;Dels=0.0;FS=2.081;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.998;QD=14.93;ReadPosRankSum=0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428715    GT:AD:DP:GQ:PL    0/1:8,8:16:99:269,0,244
9    133308960    rs12378343    G    A    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.57;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=A181;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133308735_133309508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302481    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,104
9    133309014    rs7860727    T    C    56.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=11.26;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=R199;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133308735_133309508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302481    GT:AD:DP:GQ:PL    0/1:2,3:5:63.41:86,0,63
9    133334171    rs1215986    C    T    42.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=10.69;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334909    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:73,0,33
9    133346379    rs493389    C    T    1100.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334909    GT:AD:DP:GQ:PL    1/1:0,29:29:87.28:1134,87,0
9    133346920    rs652313    A    G    2036.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.31;MQ0=0;QD=30.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422569    GT:AD:DP:GQ:PL    1/1:0,66:67:99:2070,156,0
9    133346983    rs641510    A    G    943.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422569    GT:AD:DP:GQ:PL    1/1:0,26:26:78.19:976,78,0
9    133347080    rs486889    G    A    206.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422569    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
9    133355874    rs1215940    A    G    550.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467695    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:583,45,0
9    133355902    rs2043189    C    A    316.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467695    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:349,27,0
9    133365094    rs12375699    C    T    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470849    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    133498017    rs72098410    CA    C    141.01    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.961;DB;DP=27;FS=0.0;HRun=15;HaplotypeScore=163.6047;IndelType=D;MQ=56.61;MQ0=0;MQRankSum=0.651;QD=5.22;ReadPosRankSum=0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FUBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319725    GT:AD:DP:GQ:PL    0/1:15,12:27:99:180,0,196
9    133498229    rs11444161    TA    T    43.74    QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=0.647;DB;DP=36;FS=4.607;HRun=15;HaplotypeScore=126.2631;IndelType=D;MQ=58.05;MQ0=0;MQRankSum=0.647;QD=1.22;ReadPosRankSum=-0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FUBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319725    GT:AD:DP:GQ:PL    0/1:27,6:36:82.77:83,0,347
9    133498387    rs76796364    C    A    70.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FUBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319725    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
9    133754099    rs2696141    C    A    244.84    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=18.83;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318560    GT:AD:DP:GQ:PL    0/1:4,9:13:99:275,0,121
9    133755636    rs35270714    A    C    201.83    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=18.35;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318560    GT:AD:DP:GQ:PL    0/1:3,8:11:87.35:232,0,87
9    133755754    rs12005009    T    C    112.40    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=22.48;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318560    GT:AD:DP:GQ:PL    0/1:1,4:5:22.75:142,0,23
9    133760617    rs11558834    C    T    989.65    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=80;Dels=0.0;FS=3.212;HRun=0;HaplotypeScore=0.5784;MQ=58.6;MQ0=0;MQRankSum=1.363;QD=12.37;ReadPosRankSum=-0.546;SNPEFF_AMINO_ACID_CHANGE=P795;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133759356_133763062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444970    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1020,0,1106
9    133761001    rs1056171    A    G    260.72    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.882;DB;DP=26;Dels=0.0;FS=1.657;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.505;QD=10.03;ReadPosRankSum=-0.519;SNPEFF_AMINO_ACID_CHANGE=P1108;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133759356_133763062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318560    GT:AD:DP:GQ:PL    0/1:15,11:26:99:291,0,551
9    133768727    rs7029748    C    G    656.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.577;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=13.69;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343079    GT:AD:DP:GQ:PL    0/1:24,24:48:99:687,0,756
9    133769169    rs3847193    G    A    309.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.233;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9765;MQ=60.0;MQ0=0;MQRankSum=-0.148;QD=10.33;ReadPosRankSum=1.249;SNPEFF_AMINO_ACID_CHANGE=F19;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133768815_133769225;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRFP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343079    GT:AD:DP:GQ:PL    0/1:18,12:30:99:340,0,545
9    133787096    rs7044609    T    G    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.37;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIBCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451466    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:71,0,69
9    133787156    rs56126622    C    T    81.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=9.02;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIBCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451466    GT:AD:DP:GQ:PL    0/1:5,4:9:97.90:111,0,98
9    133787225    rs6597650    A    G    31.45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=4.49;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=D142;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133787179_133787275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIBCD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253018    GT:AD:DP:GQ:PL    0/1:4,3:7:61.44:61,0,105
9    133787348    rs7035155    C    T    31.26    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIBCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253018    GT:AD:DP:GQ:PL    0/1:3,2:5:61.25:61,0,91
9    133799446    rs4740386    C    T    128.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIBCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253018    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
9    133911598    rs2275132    A    G    1196.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=58.68;MQ0=0;QD=22.57;SNPEFF_AMINO_ACID_CHANGE=A285;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133911553_133911719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    1/1:0,53:53:96.25:1229,96,0
9    133911706    rs2275131    C    T    477.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=A321;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133911553_133911719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:511,39,0
9    133911821    rs2275130    C    T    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
9    133914570    rs2293518    G    A    588.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=T406;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133914518_133914635;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:621,45,0
9    133914815    rs2293519    T    A    89.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
9    133914860    rs7855179    A    G    75.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
9    133924451    rs869457    C    T    41.32    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=8.26;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=P522S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133924407_133924517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355048    GT:AD:DP:GQ:PL    0/1:2,3:5:62.22:71,0,62
9    133927878    rs10901333    A    G    992.38    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=84;Dels=0.0;FS=2.928;HRun=1;HaplotypeScore=1.9565;MQ=59.17;MQ0=0;MQRankSum=-0.383;QD=11.81;ReadPosRankSum=-1.305;SNPEFF_AMINO_ACID_CHANGE=E544G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133927878_133928070;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355048    GT:AD:DP:GQ:PL    0/1:49,35:84:99:1022,0,1505
9    133928345    rs12349966    C    T    570.27    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.436;DB;DP=49;Dels=0.0;FS=4.443;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.391;QD=11.64;ReadPosRankSum=-1.533;SNPEFF_AMINO_ACID_CHANGE=S644;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133928237_133928352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355048    GT:AD:DP:GQ:PL    0/1:26,23:49:99:600,0,832
9    133932240    rs10901335    A    C    299.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.753;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.058;QD=11.53;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:13,13:26:99:330,0,448
9    133936381    rs3824398    G    A    198.28    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=12.39;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:7,9:16:99:228,0,175
9    133936571    rs3739510    C    G    221.65    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.445;MQ=59.03;MQ0=0;MQRankSum=-0.465;QD=9.24;ReadPosRankSum=1.333;SNPEFF_AMINO_ACID_CHANGE=R770G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133936422_133936610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355048    GT:AD:DP:GQ:PL    0/1:14,10:24:99:252,0,345
9    133942624    rs3765569    A    G    449.19    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;MQRankSum=-0.854;QD=10.96;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:23,18:41:99:479,0,634
9    133942660    rs3765568    G    A    445.53    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.018;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=13.1;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:16,18:34:99:476,0,478
9    133942702    rs3765567    T    C    438.29    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=26;Dels=0.0;FS=3.565;HRun=2;HaplotypeScore=5.2156;MQ=59.11;MQ0=0;MQRankSum=0.192;QD=16.86;ReadPosRankSum=1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:11,14:26:99:468,0,332
9    133942782    rs3765565    C    G    40.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.17;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:2,3:5:69.84:71,0,70
9    133944522    rs2275142    C    T    441.19    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=3.374;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.768;QD=19.18;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:7,16:23:99:471,0,186
9    133944525    rs2275141    A    C    345.64    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.505;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.278;QD=17.28;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:6,14:20:99:376,0,186
9    133948049    rs2275140    A    G    75.16    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=9.39;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=S1082G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133948017_133948222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355048    GT:AD:DP:GQ:PL    0/1:3,5:8:99:105,0,105
9    133960773    rs36035484    T    C    55.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.727;QD=13.85;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:1,3:4:29.74:85,0,30
9    133960777    rs7045998    C    T    72.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.24;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:103,0,31
9    133961227    rs4740214    G    A    151.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
9    133962930    rs7024108    C    T    1205.04    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=4.982;DB;DP=76;Dels=0.0;FS=1.29;HRun=0;HaplotypeScore=1.5678;MQ=59.39;MQ0=0;MQRankSum=0.713;QD=15.86;ReadPosRankSum=-0.824;SNPEFF_AMINO_ACID_CHANGE=T1433M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133962863_133963009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361069    GT:AD:DP:GQ:PL    0/1:36,40:76:99:1235,0,795
9    133963058    rs6597675    C    A    354.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=20;Dels=0.0;FS=1.885;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=17.75;ReadPosRankSum=0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    0/1:8,12:20:99:385,0,244
9    133967295    rs710074    C    A    101.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.49;MQ0=0;QD=11.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320021    GT:AD:DP:GQ:PL    1/1:0,9:9:12.03:134,12,0
9    133981629    rs2315075    T    C    171.64    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=13;Dels=0.0;FS=6.154;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.831;QD=13.2;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=C50R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_133981575_133981652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIF1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372309    GT:AD:DP:GQ:PL    0/1:5,8:13:99:202,0,138
9    133986836    rs353528    C    T    1508.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247291    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1541,129,0
9    133986848    rs353527    G    A    982.81    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=5.878;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=1.434;QD=18.2;ReadPosRankSum=0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247291    GT:AD:DP:GQ:PL    0/1:23,31:54:99:1013,0,622
9    133986980    rs353526    T    G    6852.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=201;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.612;MQ=59.54;MQ0=0;QD=34.09;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_133986789_133987050;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIF1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372301    GT:AD:DP:GQ:PL    1/1:0,201:201:99:6853,512,0
9    133987060    rs353525    G    A    4566.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.84;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIF1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247291    GT:AD:DP:GQ:PL    1/1:0,140:140:99:4566,349,0
9    134008761    rs2478783    A    G    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526412    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    134014941    rs353541    C    T    349.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=34.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525561    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:382,30,0
9    134016249    rs353540    A    G    149.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=18.74;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530843    GT:AD:DP:GQ:PL    0/1:3,5:8:99:180,0,100
9    134020092    rs103612    C    T    1474.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=P167S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134019678_134020141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540899    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1507,114,0
9    134022739    rs150981282    A    G    268.44    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.427;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.95;QD=14.13;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359428    GT:AD:DP:GQ:PL    0/1:8,11:19:99:298,0,269
9    134038698    rs4740417    T    A    163.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359428    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
9    134038821    rs4740418    T    C    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359428    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
9    134064345    rs2274427    T    C    809.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359428    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:842,66,0
9    134067474    rs10901356    C    A    76.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359428    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
9    134067795    rs4602942    G    A    432.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=36.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526346    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:465,36,0
9    134067825    rs2031700    A    G    132.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526346    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:165,12,0
9    134076950    rs72192079    C    CA    226.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=12;HaplotypeScore=73.1673;IndelType=I;MQ=58.76;MQ0=0;QD=20.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465486    GT:AD:DP:GQ:PL    1/1:2,9:11:29.87:268,30,0
9    134103626    .    C    T    489.37    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.503;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.634;QD=13.59;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=S22L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134103562_134103718;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000498010    GT:AD:DP:GQ:PL    0/1:19,17:36:99:519,0,480
9    134105939    rs352963    A    G    652.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530491    GT:AD:DP:GQ:PL    1/1:0,22:22:60.13:686,60,0
9    134136515    rs352952    A    G    1139.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.07;MQ0=0;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=N151;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134136176_134136737;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM78A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000464831    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1173,87,0
9    134136677    rs352951    A    G    532.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=35.47;SNPEFF_AMINO_ACID_CHANGE=D125;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134133463_134136737;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM78A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372269    GT:AD:DP:GQ:PL    1/1:0,15:15:45.10:565,45,0
9    134165888    rs11244356    T    C    104.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=8.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372261    GT:AD:DP:GQ:PL    1/1:0,12:12:12.03:137,12,0
9    134183379    rs2966332    C    T    737.42    PASS    AB=0.256;AC=1;AF=0.50;AN=2;BaseQRankSum=1.035;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.81;MQ0=0;MQRankSum=-0.548;QD=18.91;ReadPosRankSum=-0.507;SNPEFF_AMINO_ACID_CHANGE=T174M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134183310_134184649;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372264    GT:AD:DP:GQ:PL    0/1:10,29:39:99:767,0,167
9    134183428    .    G    A    288.27    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=0.587;DP=37;Dels=0.0;FS=5.48;HRun=0;HaplotypeScore=0.5784;MQ=58.74;MQ0=0;MQRankSum=0.185;QD=7.79;ReadPosRankSum=-0.386;SNPEFF_AMINO_ACID_CHANGE=P190;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134183310_134184649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372264    GT:AD:DP:GQ:PL    0/1:24,13:37:99:318,0,792
9    134183503    rs2986606    T    C    156.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.054;DB;DP=18;Dels=0.0;FS=2.171;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.03;QD=8.68;ReadPosRankSum=1.356;SNPEFF_AMINO_ACID_CHANGE=R215;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134183310_134184649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372264    GT:AD:DP:GQ:PL    0/1:10,8:18:99:186,0,307
9    134319834    rs35673714    GC    G    281.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.429;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=129.1479;IndelType=D;MQ=59.06;MQ0=0;MQRankSum=0.531;QD=14.08;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:10,10:20:99:321,0,413
9    134319845    rs2966341    C    A    584.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.6986;MQ=58.95;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:617,45,0
9    134322324    rs2966340    G    A    95.93    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.103;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4964;MQ=59.06;MQ0=0;MQRankSum=-0.041;QD=4.8;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:14,6:20:99:126,0,501
9    134322783    rs2966339    C    G    95.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541684    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
9    134323240    rs2994064    A    C    882.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541684    GT:AD:DP:GQ:PL    1/1:0,27:27:72.19:916,72,0
9    134323364    rs2994065    A    C    171.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541684    GT:AD:DP:GQ:PL    1/1:0,8:8:21.01:205,21,0
9    134334317    rs1416904    C    T    83.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    134340500    rs72772617    C    T    222.54    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=22;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.165;QD=10.12;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:12,10:22:99:253,0,350
9    134342938    rs10793870    T    C    538.36    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=41;Dels=0.0;FS=11.882;HRun=0;HaplotypeScore=0.734;MQ=59.44;MQ0=0;MQRankSum=0.515;QD=13.13;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:21,20:41:99:568,0,571
9    134342939    rs17458249    A    G    608.06    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.25;DB;DP=41;Dels=0.0;FS=12.215;HRun=0;HaplotypeScore=0.734;MQ=59.44;MQ0=0;MQRankSum=-0.081;QD=14.83;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:19,22:41:99:638,0,569
9    134346087    rs4471099    A    T    521.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=37.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:555,42,0
9    134346315    rs4310250    T    C    1174.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=R684;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134346175_134346370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1207,90,0
9    134348807    rs4276727    G    A    739.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422467    GT:AD:DP:GQ:PL    1/1:0,20:20:60.16:773,60,0
9    134348818    rs5900941    TG    T    665    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=3;HaplotypeScore=123.2624;IndelType=D;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422467    GT:AD:DP:GQ:PL    1/1:1,19:20:57.18:707,57,0
9    134349152    rs7850251    G    A    1174.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422467    GT:AD:DP:GQ:PL    1/1:0,34:34:90.30:1208,90,0
9    134349735    rs4740160    A    T    1188.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422467    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1222,93,0
9    134350323    rs10736851    C    G    385.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.644;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.512;QD=10.7;ReadPosRankSum=-1.667;SNPEFF_AMINO_ACID_CHANGE=T232S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134349841_134351922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418650    GT:AD:DP:GQ:PL    0/1:18,18:36:99:415,0,557
9    134350458    rs10751478    C    T    403    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.691;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.23;QD=14.39;ReadPosRankSum=1.382;SNPEFF_AMINO_ACID_CHANGE=P277L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134349841_134351922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418650    GT:AD:DP:GQ:PL    0/1:15,13:28:99:433,0,500
9    134350647    rs10793873    T    C    1068.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_AMINO_ACID_CHANGE=M1044T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134349841_134351922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,33:33:90.23:1101,90,0
9    134351065    rs7858488    G    T    739.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_AMINO_ACID_CHANGE=G1183;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134349841_134351922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,25:26:66.16:772,66,0
9    134351343    rs11243403    C    T    2689.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=A1276V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134349841_134351922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2723,214,0
9    134351770    rs78591540    G    A    355.25    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.658;DB;DP=19;Dels=0.0;FS=2.645;HRun=2;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.482;QD=18.7;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=K1418;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134349841_134351922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:6,13:19:99:385,0,182
9    134353617    rs10580322    TCA    T    201.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=32.1293;IndelType=D;MQ=56.04;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456307    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
9    134358657    rs10901061    G    C    405.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:1,12:13:33.11:439,33,0
9    134358719    rs41317004    G    A    535.60    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.732;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9279;MQ=58.92;MQ0=0;MQRankSum=1.448;QD=12.46;ReadPosRankSum=-1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:20,22:43:99:566,0,619
9    134359000    rs2275500    G    A    40.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:3,2:5:70.20:70,0,70
9    134359918    rs10751480    G    C    425.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:459,33,0
9    134360015    rs10793874    G    T    2009.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=66;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;MQRankSum=-1.575;QD=30.44;ReadPosRankSum=1.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2042,166,0
9    134360826    rs3824401    G    A    77.65    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.41;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:108,0,26
9    134361318    rs3808829    C    A    209.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:243,18,0
9    134361442    rs72772632    T    A    293.62    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.327;DB;DP=25;Dels=0.0;FS=2.481;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=11.74;ReadPosRankSum=-0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    0/1:14,11:25:99:324,0,470
9    134361581    rs10793875    T    A    1021.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=58.69;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,32:32:78.26:1055,78,0
9    134361627    rs10901062    G    A    555.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:589,45,0
9    134362878    rs3802349    T    C    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
9    134365795    rs4740252    C    G    1459.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357304    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1492,108,0
9    134381487    .    G    GT    260.06    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.561;DP=24;FS=6.69;HRun=9;HaplotypeScore=53.279;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=10.84;ReadPosRankSum=1.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341012    GT:AD:DP:GQ:PL    0/1:13,11:24:99:299,0,220
9    134382556    rs6597500    G    A    84.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483472    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    134382673    rs6597501    C    T    567.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483472    GT:AD:DP:GQ:PL    1/1:0,18:18:51.12:601,51,0
9    134384277    rs11243404    T    C    578.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:612,48,0
9    134384500    rs11999204    C    T    206.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
9    134384513    rs28447664    A    G    132.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
9    134385435    rs3887873    C    T    224.99    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.803;DB;DP=22;Dels=0.0;FS=1.885;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=10.23;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=Q134*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_9_134385290_134385449;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000441334    GT:AD:DP:GQ:PL    0/1:9,13:22:99:255,0,276
9    134385436    rs2296949    A    G    587.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=27.98;SNPEFF_AMINO_ACID_CHANGE=Q134R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134385290_134385449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441334    GT:AD:DP:GQ:PL    1/1:0,21:21:54.08:621,54,0
9    134385599    rs2018621    A    G    429.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,14:14:39.08:462,39,0
9    134385977    rs3780259    G    A    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
9    134386675    rs4740163    T    G    1183.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,34:34:93.29:1216,93,0
9    134386744    rs10901065    T    C    2043.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=S90P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134386724_134386859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372221    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2076,156,0
9    134386903    rs10901066    G    A    892.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:925,69,0
9    134387038    rs10793881    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
9    134387315    rs10901068    C    G    239.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418774    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
9    134387488    rs3739494    T    C    504.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.22;SNPEFF_AMINO_ACID_CHANGE=D127;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134387428_134387523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541219    GT:AD:DP:GQ:PL    1/1:0,20:20:42.13:537,42,0
9    134387539    rs59515295    G    A    169.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=16.96;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415075    GT:AD:DP:GQ:PL    0/1:4,6:10:99:200,0,139
9    134388446    rs7865761    G    A    162.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415075    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
9    134388562    rs77176471    C    T    112.95    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=14.12;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415075    GT:AD:DP:GQ:PL    0/1:3,5:8:95.94:143,0,96
9    134394163    rs1547768    A    G    354.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341012    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:388,33,0
9    134395574    rs34954751    G    A    300.74    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.016;DB;DP=23;Dels=0.0;FS=1.971;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.769;QD=13.08;ReadPosRankSum=-1.077;SNPEFF_AMINO_ACID_CHANGE=R185;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134395467_134395580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372220    GT:AD:DP:GQ:PL    0/1:11,12:23:99:331,0,315
9    134395628    rs2277152    C    G    444.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372208    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:477,36,0
9    134397057    rs7849433    C    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467848    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    134397186    rs7870715    T    C    82.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467848    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
9    134397624    rs4740165    C    T    592.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DB;DP=19;Dels=0.0;FS=9.542;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=31.16;ReadPosRankSum=-1.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467848    GT:AD:DP:GQ:PL    1/1:1,18:19:20.57:625,21,0
9    134398534    rs3739495    T    C    421.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467848    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:455,39,0
9    134401145    rs7040906    G    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341012    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    134401335    rs2296957    C    T    1039.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=29.71;SNPEFF_AMINO_ACID_CHANGE=A180T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134401316_134401364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372208    GT:AD:DP:GQ:PL    1/1:0,35:35:84.24:1073,84,0
9    134404199    rs4740260    A    G    265.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372208    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:299,24,0
9    134406071    rs7867616    C    G    707.30    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=4.394;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.58;MQ0=0;MQRankSum=0.305;QD=16.08;ReadPosRankSum=1.104;SNPEFF_AMINO_ACID_CHANGE=E29Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_134405873_134406074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372211    GT:AD:DP:GQ:PL    0/1:21,23:44:99:737,0,512
9    134406131    rs3904960    G    T    164.09    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.127;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=8.64;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372208    GT:AD:DP:GQ:PL    0/1:12,7:19:99:194,0,428
9    134463039    rs11794453    A    T    181.34    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=25.91;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    0/1:1,6:7:20.71:211,0,21
9    134465398    rs3818581    T    C    1017.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1051,81,0
9    134465410    rs3818580    G    C    216.11    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.47;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.102;QD=10.29;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    0/1:11,10:21:99:246,0,321
9    134467314    rs2296952    G    A    168.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
9    134467578    rs3215862    GA    G    1731.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=6;HaplotypeScore=154.329;IndelType=D;MQ=60.74;MQ0=0;QD=29.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    1/1:2,56:58:99:1774,165,0
9    134467754    rs11794623    T    A    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
9    134473517    rs2296950    T    C    114.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=14.3;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545785    GT:AD:DP:GQ:PL    0/1:4,4:8:99:144,0,139
9    134477579    rs13301422    T    C    89.12    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=2.92;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=6.86;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    0/1:8,5:13:99:119,0,285
9    134479293    rs7037668    A    G    364.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=30.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:397,30,0
9    134497450    rs7023385    C    G    227.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481260    GT:AD:DP:GQ:PL    1/1:0,7:11:21.07:260,21,0
9    134505394    rs4740174    T    C    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    134505545    rs11243457    A    C    477.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:510,42,0
9    134518575    rs7854489    T    C    670.77    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=0.04;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=16.36;ReadPosRankSum=-0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266110    GT:AD:DP:GQ:PL    0/1:17,24:41:99:701,0,490
9    134585181    rs11243480    C    T    354.89    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.377;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.238;QD=17.74;ReadPosRankSum=-0.555;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_134585007_134585229;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337036    GT:AD:DP:GQ:PL    0/1:7,13:20:99:385,0,236
9    134612965    rs7034382    C    A    319.94    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.927;QD=17.77;ReadPosRankSum=-1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357686    GT:AD:DP:GQ:PL    0/1:7,11:18:99:350,0,187
9    134952790    rs4440729    T    C    2649.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.01;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292035    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2683,202,0
9    135073309    rs11243663    G    A    202.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:235,18,0
9    135073315    rs11243664    C    G    276.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:309,24,0
9    135073877    rs3824574    C    T    867.29    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.277;DB;DP=47;Dels=0.0;FS=2.621;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.587;QD=18.45;ReadPosRankSum=1.627;SNPEFF_AMINO_ACID_CHANGE=F246;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135073353_135073996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    0/1:17,30:47:99:897,0,385
9    135073967    rs3739930    C    T    361.21    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.272;DB;DP=25;Dels=0.0;FS=6.314;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.192;QD=14.45;ReadPosRankSum=-1.67;SNPEFF_AMINO_ACID_CHANGE=Y276;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135073353_135073996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    0/1:11,14:25:99:391,0,344
9    135074063    rs3739929    T    C    154.08    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=19.26;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    0/1:3,5:8:99:184,0,100
9    135074103    rs3739928    G    A    249.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
9    135102254    rs2149171    C    T    148.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=10.58;ReadPosRankSum=-0.839;SNPEFF_AMINO_ACID_CHANGE=H292;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135102236_135102412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    0/1:8,6:14:99:178,0,213
9    135105964    rs4962173    A    G    130.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=T346A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135105959_135105982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372179    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
9    135106054    rs2274854    T    A    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    135114365    rs2274853    G    A    386.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.868;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.218;QD=13.82;ReadPosRankSum=-0.607;SNPEFF_AMINO_ACID_CHANGE=G349S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135114355_135114392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTNG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360670    GT:AD:DP:GQ:PL    0/1:14,14:28:99:417,0,415
9    135133735    rs11791139    T    C    250.42    MQFilter40    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.353;DB;DP=22;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.8667;MQ=31.13;MQ0=4;MQRankSum=0.971;QD=11.38;ReadPosRankSum=-1.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    0/1:13,9:22:99:280,0,227
9    135202829    rs543573    T    C    3202.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5744;MQ=59.53;MQ0=0;QD=36.39;SNPEFF_AMINO_ACID_CHANGE=I1386V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135201711_135205886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3236,253,0
9    135203231    rs1183768    C    T    3292.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;QD=30.48;SNPEFF_AMINO_ACID_CHANGE=G1252R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135201711_135205886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3292,286,0
9    135203409    rs1185193    A    C    2278.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6342;MQ=59.67;MQ0=0;MQRankSum=0.968;QD=32.55;ReadPosRankSum=-1.019;SNPEFF_AMINO_ACID_CHANGE=D1192E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135201711_135205886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:2,68:70:99:2311,172,0
9    135206460    rs9411449    A    G    3276.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9983;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=35.23;ReadPosRankSum=0.066;SNPEFF_AMINO_ACID_CHANGE=Y359;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135206439_135206526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:2,91:93:99:3276,196,0
9    135206979    rs580964    A    G    173.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
9    135210324    rs573913    A    C    225.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:258,21,0
9    135211609    rs111938515    AAC    A    233.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=20.0479;IndelType=D;MQ=60.0;MQ0=0;QD=38.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:276,18,0
9    135218343    rs514279    A    G    129.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
9    135221597    rs497650    G    A    573.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224140    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:607,45,0
9    135251241    rs1752675    T    C    83.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=16.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:116,9,0
9    135251366    rs1752676    G    A    390.92    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=17.0;ReadPosRankSum=-1.068;SNPEFF_AMINO_ACID_CHANGE=A885V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135251008_135251555;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334270    GT:AD:DP:GQ:PL    0/1:9,13:23:99:421,0,277
9    135262244    rs1166300    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    135263573    rs556386    G    T    1850.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_AMINO_ACID_CHANGE=I755;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135263526_135263615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1883,135,0
9    135263816    rs1186334    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    135265876    rs471890    T    C    378.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:412,30,0
9    135266387    rs1166302    G    A    172.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
9    135271987    rs1166321    T    C    321.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=29.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,11:11:33.05:354,33,0
9    135272061    rs5900975    GT    G    54.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=7;FS=0.0;HRun=13;HaplotypeScore=49.2706;IndelType=D;MQ=51.02;MQ0=0;MQRankSum=0.736;QD=7.8;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:2,5:7:3.86:94,4,0
9    135273266    rs546201    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.23;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
9    135273507    rs569288    G    A    646.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0321;MQ=59.66;MQ0=0;QD=23.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,27:27:57.15:679,57,0
9    135273607    rs504525    C    G    1626.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.56;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=L566;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135273528_135273713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1660,120,0
9    135273759    rs5900976    G    GA    767.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=33.7331;IndelType=I;MQ=59.96;MQ0=0;QD=42.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:810,54,0
9    135278482    rs501642    A    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    135374764    rs7047726    G    A    510.87    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=4.462;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=10.64;ReadPosRankSum=-0.884;SNPEFF_AMINO_ACID_CHANGE=G101R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135374759_135374987;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf171;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393215    GT:AD:DP:GQ:PL    0/1:31,17:48:99:541,0,765
9    135374898    rs562350    T    C    916.76    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.684;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8506;MQ=59.78;MQ0=0;MQRankSum=0.677;QD=8.57;ReadPosRankSum=0.927;SNPEFF_AMINO_ACID_CHANGE=N145;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135374759_135374987;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf171;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393215    GT:AD:DP:GQ:PL    0/1:65,41:106:99:947,0,1857
9    135388799    rs577416    G    A    298.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=16.56;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf171;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393215    GT:AD:DP:GQ:PL    0/1:8,10:18:99:328,0,274
9    135412913    rs13286286    G    A    341.31    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.237;DB;DP=26;Dels=0.0;FS=5.142;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.157;QD=13.13;ReadPosRankSum=-0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf171;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343036    GT:AD:DP:GQ:PL    0/1:12,14:26:99:371,0,309
9    135447728    rs72767844    A    G    645.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf171;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343036    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:678,54,0
9    135470176    rs306549    C    G    2880.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6501;MQ=59.19;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263610    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2913,223,0
9    135470414    rs306547    T    C    2053.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=31.6;SNPEFF_AMINO_ACID_CHANGE=I670V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135470147_135470499;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438527    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2087,165,0
9    135521303    rs306537    C    T    97.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=9.73;ReadPosRankSum=-1.133;SNPEFF_AMINO_ACID_CHANGE=L429;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135521282_135521458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438527    GT:AD:DP:GQ:PL    0/1:6,4:10:99:127,0,176
9    135528016    rs11243865    C    A    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.98;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310532    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,106
9    135537573    rs3739900    G    T    95.03    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.0;QD=7.31;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310532    GT:AD:DP:GQ:PL    0/1:8,5:13:99:125,0,221
9    135546021    rs146201597    G    A    68.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.537;QD=11.48;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=A12;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135545422_135546342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372146    GT:AD:DP:GQ:PL    0/1:3,3:6:95.09:99,0,95
9    135554566    rs371169    G    A    2799.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=59.5;MQ0=0;QD=33.33;SNPEFF_AMINO_ACID_CHANGE=E520;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135553364_135555190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372146    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2833,217,0
9    135555341    rs424416    G    A    227.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372146    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:261,21,0
9    135558813    rs77428490    C    CA    135.05    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=31.3783;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=1.309;QD=10.39;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372146    GT:AD:DP:GQ:PL    0/1:8,5:13:99:174,0,216
9    135562800    rs456396    G    A    150.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372146    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:184,15,0
9    135562834    rs467183    G    T    119.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=19.89;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372146    GT:AD:DP:GQ:PL    1/1:1,5:6:12.04:152,12,0
9    135602668    rs7856950    C    G    117.97    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.59;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298545    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:148,0,26
9    135602727    rs1999121    T    C    284.71    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.81;QD=13.56;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298545    GT:AD:DP:GQ:PL    0/1:11,10:21:99:315,0,355
9    135698470    rs72759416    A    G    68.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.4;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298545    GT:AD:DP:GQ:PL    0/1:3,3:6:93.49:98,0,93
9    135702490    rs13299768    T    C    436.26    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.012;DB;DP=31;Dels=0.0;FS=3.485;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.353;QD=14.07;ReadPosRankSum=0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298545    GT:AD:DP:GQ:PL    0/1:14,17:31:99:466,0,452
9    135730078    rs214640    T    G    81.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298545    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
9    135739226    rs2251448    T    C    339.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298545    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:373,27,0
9    135742518    rs2526009    C    T    172.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298545    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:205,15,0
9    135763816    rs2073869    C    T    591.76    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.35;DB;DP=37;Dels=0.0;FS=4.938;HRun=1;HaplotypeScore=0.0;MQ=57.58;MQ0=0;MQRankSum=-0.217;QD=15.99;ReadPosRankSum=-0.283;SNPEFF_AMINO_ACID_CHANGE=L163;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135763677_135763824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350499    GT:AD:DP:GQ:PL    0/1:15,22:37:99:622,0,427
9    135764081    rs1062218    A    G    36.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.23;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298552    GT:AD:DP:GQ:PL    0/1:1,2:3:13.67:67,0,14
9    135772717    rs4962081    G    A    1665.69    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=107;Dels=0.0;FS=2.584;HRun=0;HaplotypeScore=0.9894;MQ=59.57;MQ0=0;MQRankSum=-0.433;QD=15.57;ReadPosRankSum=-0.484;SNPEFF_AMINO_ACID_CHANGE=A892;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135772571_135772732;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545250    GT:AD:DP:GQ:PL    0/1:52,55:107:99:1696,0,1718
9    135773000    rs5901000    G    GA    458.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DB;DP=75;FS=0.0;HRun=18;HaplotypeScore=569.4543;IndelType=I;MQ=48.56;MQ0=0;MQRankSum=-0.398;QD=6.03;ReadPosRankSum=-1.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298552    GT:AD:DP:GQ:PL    1/1:49,13:75:45.75:501,46,0
9    135776034    rs1076160    C    T    873.08    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.645;DB;DP=51;Dels=0.0;FS=1.218;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.74;QD=17.12;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298552    GT:AD:DP:GQ:PL    0/1:22,29:51:99:903,0,653
9    135861998    rs2073577    T    G    65.82    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=8.23;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFI1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339463    GT:AD:DP:GQ:PL    0/1:3,5:8:64.79:96,0,65
9    135862563    rs56256724    C    T    129.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFI1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339463    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
9    135862632    rs633153    C    T    461.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFI1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339463    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:494,36,0
9    135862984    rs2073579    G    C    34.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFI1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339463    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:64,0,33
9    135862987    rs631754    T    C    38.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFI1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339463    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:68,0,32
9    135866154    rs8193004    C    T    114.32    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.05;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFI1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339463    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:144,0,27
9    135866648    rs4962034    C    G    52.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.36;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFI1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339463    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
9    135894894    rs12350044    A    G    941.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.76;MQ0=70;QD=8.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL593851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506798    GT:AD:DP:GQ:PL    1/1:9,100:109:93.02:974,93,0
9    135895156    rs148740450    A    T    155.80    MQFilter40    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=2.575;DB;DP=77;Dels=0.0;FS=1.617;HRun=0;HaplotypeScore=0.8321;MQ=13.11;MQ0=46;MQRankSum=1.48;QD=2.02;ReadPosRankSum=-0.831;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL593851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506798    GT:AD:DP:GQ:PL    0/1:58,19:77:99:186,0,340
9    135895217    .    T    G    59.33    MQFilter40;QDFilter2    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.35;MQ0=48;MQRankSum=-0.537;QD=0.82;ReadPosRankSum=1.014;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL593851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506798    GT:AD:DP:GQ:PL    0/1:55,17:72:89.32:89,0,244
9    135895949    rs151323788    T    G    192.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.11;MQ0=5;QD=10.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL593851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506798    GT:AD:DP:GQ:PL    1/1:0,18:18:20.99:225,21,0
9    135895966    rs139763728    T    C    151.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.23;MQ0=5;QD=9.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL593851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506798    GT:AD:DP:GQ:PL    1/1:0,16:16:20.98:184,21,0
9    135944524    .    C    T    44.71    MQFilter40;QDFilter2    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.133;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=9.36;MQ0=72;MQRankSum=-0.716;QD=0.45;ReadPosRankSum=0.173;SNPEFF_AMINO_ACID_CHANGE=T388;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135944443_135944646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351304    GT:AD:DP:GQ:PL    0/1:67,32:99:74.71:75,0,130
9    135946599    rs488087    C    T    293.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.36;MQ0=0;MQRankSum=-3.062;QD=14.69;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=P504;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135946374_135947248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351304    GT:AD:DP:GQ:PL    0/1:10,10:20:99:324,0,259
9    135961884    rs671412    A    G    70.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.0;MQ=49.94;MQ0=0;MQRankSum=-2.637;QD=5.89;ReadPosRankSum=1.468;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411440    GT:AD:DP:GQ:PL    0/1:8,4:12:99:101,0,256
9    135961902    rs680220    T    C    70.64    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=47.59;MQ0=0;MQRankSum=-2.793;QD=5.89;ReadPosRankSum=-0.244;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411440    GT:AD:DP:GQ:PL    0/1:7,5:12:99:101,0,240
9    135962399    rs640502    G    A    419.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.42;MQ0=0;QD=29.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411440    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:453,36,0
9    135962464    rs74753118    CT    C    251.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=41.8167;IndelType=D;MQ=57.28;MQ0=0;QD=35.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CELP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411440    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:294,21,0
9    135974079    rs1062356    G    C    734.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=L825;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135973107_135974149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393160    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:768,57,0
9    135974100    rs886017    G    A    188.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=20;Dels=0.0;FS=7.06;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.501;QD=9.44;ReadPosRankSum=0.964;SNPEFF_AMINO_ACID_CHANGE=T818;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135973107_135974149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393160    GT:AD:DP:GQ:PL    0/1:12,8:20:99:219,0,409
9    135976664    rs34018822    C    T    37.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=6.32;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424572    GT:AD:DP:GQ:PL    0/1:3,3:6:67.94:68,0,111
9    135976679    rs2519090    C    A    80.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=16.04;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424572    GT:AD:DP:GQ:PL    0/1:2,3:5:68.47:110,0,68
9    135976698    rs35108384    G    A    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.86;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424572    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,107
9    135976826    rs641999    G    A    664.16    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.808;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.173;QD=15.45;ReadPosRankSum=-0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424572    GT:AD:DP:GQ:PL    0/1:18,25:43:99:694,0,523
9    135978153    rs694881    G    C    409.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460587    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:442,33,0
9    135978378    rs686346    T    C    35.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.92;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460587    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:66,0,33
9    135979751    rs598499    C    G    578.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372047    GT:AD:DP:GQ:PL    1/1:0,21:21:45.15:612,45,0
9    135985796    rs3761824    C    T    252.69    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=14.04;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=V108;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_135985683_135985876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372062    GT:AD:DP:GQ:PL    0/1:8,10:18:99:283,0,265
9    136004699    rs623361    G    A    119.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=13.25;ReadPosRankSum=1.652;SNPEFF_AMINO_ACID_CHANGE=R3W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136004526_136004788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGDS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393157    GT:AD:DP:GQ:PL    0/1:4,5:9:99:149,0,103
9    136030458    rs651453    C    T    440.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372036    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:473,36,0
9    136031346    rs2073927    A    G    1133.46    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=65;Dels=0.0;FS=7.156;HRun=1;HaplotypeScore=0.5784;MQ=59.65;MQ0=0;MQRankSum=0.735;QD=17.44;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372036    GT:AD:DP:GQ:PL    0/1:28,37:65:99:1163,0,846
9    136037742    rs2073924    G    A    99.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=1.036;QD=9.91;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=L20F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136037729_136037919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBGT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372036    GT:AD:DP:GQ:PL    0/1:6,4:10:99:129,0,211
9    136080746    rs1052517    A    G    244.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=30.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461961    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:277,24,0
9    136081261    rs137892402    AG    A    130.88    QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=4.885;DB;DP=76;FS=8.232;HRun=2;HaplotypeScore=298.3849;IndelType=D;MQ=50.35;MQ0=0;MQRankSum=-2.623;QD=1.62;ReadPosRankSum=1.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:65,16:76:99:170,0,2596
9    136081283    rs147134232    C    T    138.04    QDFilter2    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.853;DB;DP=94;Dels=0.0;FS=14.838;HRun=0;HaplotypeScore=0.0;MQ=50.81;MQ0=0;MQRankSum=-4.246;QD=1.47;ReadPosRankSum=1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:75,19:94:99:168,0,2411
9    136081289    rs146582704    T    C    138.69    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=0.314;DB;DP=98;Dels=0.0;FS=12.345;HRun=2;HaplotypeScore=0.9578;MQ=50.94;MQ0=0;MQRankSum=-4.322;QD=1.42;ReadPosRankSum=1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:79,19:98:99:169,0,2538
9    136081356    rs148158748    T    G    67.26    HaplotypeScoreFilter13;QDFilter2    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=3.251;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.195;MQ=53.13;MQ0=1;MQRankSum=-3.606;QD=0.74;ReadPosRankSum=1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:73,18:91:97.25:97,0,2346
9    136081362    rs149232831    G    A    52.06    HaplotypeScoreFilter13;QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.745;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.195;MQ=53.09;MQ0=1;MQRankSum=-3.523;QD=0.63;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:65,18:83:82.06:82,0,2087
9    136081364    .    GC    G    82.01    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=4.813;DP=72;FS=0.0;HRun=3;HaplotypeScore=421.403;IndelType=D;MQ=53.49;MQ0=1;MQRankSum=-0.51;QD=1.04;ReadPosRankSum=2.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:65,14:72:99:121,0,2452
9    136081391    rs6597608    G    A    1897.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.14;MQ0=1;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1930,150,0
9    136081466    rs6597609    C    T    343.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.7115;MQ=47.2;MQ0=0;MQRankSum=2.132;QD=18.09;ReadPosRankSum=0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    1/1:3,16:19:6.42:375,6,0
9    136081598    rs28507496    C    T    356.76    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.574;DB;DP=23;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.5784;MQ=58.76;MQ0=0;MQRankSum=-1.023;QD=15.51;ReadPosRankSum=0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:10,13:23:99:387,0,313
9    136083580    rs2073870    T    G    1508.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.0;MQ0=1;QD=27.43;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1542,120,0
9    136083638    rs72769499    C    G    60.88    QDFilter2    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.56;MQ0=1;MQRankSum=-3.811;QD=1.6;ReadPosRankSum=-1.628;SNPEFF_AMINO_ACID_CHANGE=G26;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136083632_136083643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:31,7:38:90.87:91,0,965
9    136083695    rs3891088    C    T    196.06    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.266;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8907;MQ=57.77;MQ0=0;MQRankSum=2.0;QD=10.32;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    0/1:10,9:19:99:226,0,288
9    136083801    rs4310274    A    G    667.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.77;MQ0=0;QD=26.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372032    GT:AD:DP:GQ:PL    1/1:0,24:25:54.16:701,54,0
9    136101557    rs4379511    T    C    1883.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7753;MQ=58.88;MQ0=0;QD=30.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LCN1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372031    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1917,153,0
9    136101633    rs77236853    C    T    524.34    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.751;DB;DP=40;Dels=0.0;FS=1.594;HRun=0;HaplotypeScore=0.7887;MQ=59.42;MQ0=0;MQRankSum=0.323;QD=13.11;ReadPosRankSum=-1.054;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LCN1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372031    GT:AD:DP:GQ:PL    0/1:20,19:40:99:554,0,487
9    136101999    rs886082    T    G    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LCN1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372031    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
9    136102199    rs4507838    T    C    818.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.09;MQ0=0;QD=26.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LCN1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372031    GT:AD:DP:GQ:PL    1/1:0,30:31:72.20:851,72,0
9    136133380    rs66882853    CGGG    C    1016.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=4;HaplotypeScore=89.2875;IndelType=D;MQ=49.23;MQ0=0;QD=50.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,20:20:60.21:1059,60,0
9    136133506    rs512770    A    G    2436.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.65;MQ0=0;QD=34.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2470,187,0
9    136133531    rs4962040    A    G    2307.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.81;MQ0=0;QD=30.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2340,184,0
9    136133582    rs55817681    AG    A    1067.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=5;HaplotypeScore=307.3813;IndelType=D;MQ=59.36;MQ0=0;QD=26.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:6,34:40:99:1109,99,0
9    136133699    rs641959    C    A    118.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
9    136133714    rs641943    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    136133743    rs514708    T    C    89.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
9    136134994    rs626035    G    T    36.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
9    136134995    rs547495    C    T    36.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
9    136135047    rs547643    T    C    194.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=32.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
9    136135096    rs625593    A    G    387.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.84;MQ0=0;QD=27.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:420,39,0
9    136135108    rs8176707    G    T    198.62    MQFilter40    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.73;MQ0=0;MQRankSum=-0.776;QD=10.45;ReadPosRankSum=0.122;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    0/1:9,10:19:99:229,0,160
9    136135137    rs6151203    GCTTCTGTCCACAC    G    2952.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=489.4552;IndelType=D;MQ=33.58;MQ0=0;QD=113.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,26:26:78.27:2995,78,0
9    136135195    rs549331    G    C    1287.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.19;MQ0=0;QD=28.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1321,108,0
9    136135237    rs549443    A    G    1575.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.6;MQ0=0;QD=26.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1608,150,0
9    136135238    rs549446    T    C    1545.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.6;MQ0=0;QD=26.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1579,147,0
9    136135365    rs624601    A    G    459.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,14:14:42.08:493,42,0
9    136135444    rs551322    G    A    113.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=28.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
9    136136516    rs493211    A    G    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
9    136136770    rs688976    A    C    1121.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=59.36;MQ0=0;QD=31.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1155,90,0
9    136136963    rs2073826    G    T    95.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
9    136150403    rs537895    A    G    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ABO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
9    136184985    rs11791119    T    C    134.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LCN1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372030    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
9    136185116    rs148915256    G    C    301.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.604;DB;DP=21;Dels=0.0;FS=4.801;HRun=0;HaplotypeScore=0.0;MQ=47.34;MQ0=0;MQRankSum=-0.604;QD=14.38;ReadPosRankSum=-1.812;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LCN1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372030    GT:AD:DP:GQ:PL    0/1:9,12:21:99:332,0,283
9    136185215    rs56106415    T    C    153.26    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.523;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.12;MQ0=6;MQRankSum=0.053;QD=6.66;ReadPosRankSum=-1.418;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LCN1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372030    GT:AD:DP:GQ:PL    0/1:13,10:23:99:183,0,167
9    136185358    rs544622    T    C    140.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.67;MQ0=1;QD=20.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LCN1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372030    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:174,15,0
9    136198589    rs10793964    C    G    37.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.33;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468290    GT:AD:DP:GQ:PL    0/1:2,4:6:67.98:68,0,70
9    136199466    rs886089    G    A    1231.18    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=4.879;DB;DP=94;Dels=0.0;FS=1.823;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.547;QD=13.1;ReadPosRankSum=0.028;SNPEFF_AMINO_ACID_CHANGE=T175M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136199384_136199596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372022    GT:AD:DP:GQ:PL    0/1:52,41:94:99:1261,0,1351
9    136199503    rs886090    G    A    1246.50    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=3.505;DB;DP=114;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.9832;MQ=59.8;MQ0=0;MQRankSum=-0.509;QD=10.93;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=R163W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136199384_136199596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372022    GT:AD:DP:GQ:PL    0/1:68,46:114:99:1276,0,1804
9    136200810    rs120858    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=16.47;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491289    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:81,6,0
9    136201470    rs563666    C    A    1321.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491289    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1355,108,0
9    136210814    .    G    A    38.39    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446777    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
9    136211248    rs9645009    A    G    161.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.779;QD=13.42;ReadPosRankSum=1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482295    GT:AD:DP:GQ:PL    0/1:6,6:12:99:191,0,209
9    136213521    rs616836    T    C    85.38    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.452;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=58.89;MQ0=0;MQRankSum=0.039;QD=4.07;ReadPosRankSum=-0.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471524    GT:AD:DP:GQ:PL    0/1:15,6:21:99:115,0,505
9    136214955    rs553877    A    G    362.73    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.407;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.853;QD=18.14;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371974    GT:AD:DP:GQ:PL    0/1:7,13:20:99:393,0,223
9    136223043    rs59358281    C    G    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315731    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    136227017    rs2296809    G    A    126.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.743;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=9.06;ReadPosRankSum=-0.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486887    GT:AD:DP:GQ:PL    0/1:8,6:14:99:157,0,261
9    136227260    rs12763    A    G    114.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.858;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.156;QD=5.46;ReadPosRankSum=-0.112;SNPEFF_AMINO_ACID_CHANGE=S213G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136227141_136227310;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371964    GT:AD:DP:GQ:PL    0/1:14,7:21:99:145,0,449
9    136227694    rs2296810    C    G    82.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.65;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486887    GT:AD:DP:GQ:PL    0/1:1,3:4:27.27:113,0,27
9    136232758    rs2269894    T    C    250.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.208;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.53;QD=13.92;ReadPosRankSum=1.413;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371964    GT:AD:DP:GQ:PL    0/1:9,9:18:99:281,0,269
9    136234124    rs1179033    A    G    650.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SURF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371989    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:683,51,0
9    136249359    .    G    A    46.55    MQFilter40;SnpCluster    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=11.8577;MQ=28.2;MQ0=0;MQRankSum=0.37;QD=3.88;ReadPosRankSum=-1.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:9,3:12:21.43:77,0,21
9    136249364    .    G    A    46.55    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.8278;MQ=28.2;MQ0=0;MQRankSum=-0.185;QD=3.88;ReadPosRankSum=-0.925;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:9,3:12:21.43:77,0,21
9    136249368    .    A    G    44.66    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=0.134;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=27.5196;MQ=28.26;MQ0=0;MQRankSum=0.134;QD=3.44;ReadPosRankSum=1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:1,12:13:21.43:75,0,21
9    136249406    .    GATA    G    171.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=11;FS=0.0;HRun=0;HaplotypeScore=566.3467;IndelType=D;MQ=28.12;MQ0=0;MQRankSum=0.747;QD=15.6;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    1/1:5,6:11:8.18:212,8,0
9    136249422    .    G    A    46.58    HaplotypeScoreFilter13;MQFilter40    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.7592;MQ=27.7;MQ0=0;MQRankSum=0.217;QD=3.11;ReadPosRankSum=-0.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:12,3:15:16.64:77,0,17
9    136249436    .    A    G    40.25    HaplotypeScoreFilter13;MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=15.9413;MQ=28.2;MQ0=0;MQRankSum=0.925;QD=3.35;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:9,3:12:70.25:70,0,192
9    136249457    .    A    G    68.22    HaplotypeScoreFilter13;MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.054;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=24.6339;MQ=28.4;MQ0=0;MQRankSum=-0.597;QD=4.26;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:6,10:16:48.84:98,0,49
9    136249480    .    GTCA    G    37.32    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DP=17;FS=0.0;HRun=0;HaplotypeScore=939.896;IndelType=D;MQ=28.43;MQ0=0;MQRankSum=1.214;QD=2.2;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:8,9:17:64.09:76,0,64
9    136249491    .    T    G    67.33    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=21.9621;MQ=28.56;MQ0=0;MQRankSum=0.468;QD=3.06;ReadPosRankSum=0.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    1/1:18,4:22:9.02:99,9,0
9    136249497    .    C    T    167.73    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=14.9748;MQ=28.68;MQ0=0;QD=5.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    1/1:0,23:30:18.05:201,18,0
9    136249503    rs75732799    G    A    137.58    HaplotypeScoreFilter13;MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=28.8751;MQ=28.7;MQ0=0;MQRankSum=0.326;QD=4.3;ReadPosRankSum=2.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:8,24:32:98.09:168,0,98
9    136249508    .    T    TG    739.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.05;DP=30;FS=0.0;HRun=1;HaplotypeScore=1482.7785;IndelType=I;MQ=29.0;MQ0=0;MQRankSum=-0.491;QD=24.66;ReadPosRankSum=-3.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    1/1:3,27:30:50.88:782,51,0
9    136249514    .    G    GGTT    820.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.809;DP=30;FS=0.0;HRun=0;HaplotypeScore=1492.2901;IndelType=I;MQ=29.0;MQ0=0;MQRankSum=1.281;QD=27.37;ReadPosRankSum=-2.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:9,20:30:55.14:860,0,55
9    136249529    .    G    GGC    1122.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.909;DP=32;FS=0.0;HRun=0;HaplotypeScore=1427.0945;IndelType=I;MQ=29.0;MQ0=0;MQRankSum=1.168;QD=35.07;ReadPosRankSum=1.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    1/1:4,28:32:25.82:1164,26,0
9    136249531    .    GA    G    690.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.444;DP=32;FS=0.0;HRun=1;HaplotypeScore=1453.381;IndelType=D;MQ=29.0;MQ0=0;MQRankSum=-1.09;QD=21.57;ReadPosRankSum=2.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    1/1:2,28:32:41.62:732,42,0
9    136249542    .    TAGTAATG    T    1867.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.109;DP=30;FS=0.0;HRun=0;HaplotypeScore=1341.0978;IndelType=D;MQ=29.0;MQ0=0;MQRankSum=0.043;QD=62.26;ReadPosRankSum=2.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    1/1:0,30:30:52.38:1910,52,0
9    136249548    rs113992722    TG    T    325.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.472;DB;DP=36;FS=0.0;HRun=3;HaplotypeScore=1437.97;IndelType=D;MQ=34.0;MQ0=0;MQRankSum=-0.344;QD=9.05;ReadPosRankSum=0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    1/1:30,6:36:59.68:368,60,0
9    136260696    rs41306714    G    C    203    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=17;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=11.94;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:9,8:17:99:233,0,284
9    136268038    rs3124748    C    T    73.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=12.21;ReadPosRankSum=-1.537;SNPEFF_AMINO_ACID_CHANGE=N457;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136268007_136268141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371957    GT:AD:DP:GQ:PL    0/1:3,3:6:63.10:103,0,63
9    136268084    rs3124747    A    G    76.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.11;SNPEFF_AMINO_ACID_CHANGE=K473E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136268007_136268141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371957    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
9    136274058    rs7030175    G    T    35.92    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=53.95;MQ0=0;MQRankSum=0.322;QD=4.49;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371955    GT:AD:DP:GQ:PL    0/1:3,5:8:65.91:66,0,67
9    136277480    rs2285486    A    G    1537.85    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=137;Dels=0.0;FS=4.277;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.092;QD=11.23;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=T268;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136277419_136277612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453165    GT:AD:DP:GQ:PL    0/1:80,57:137:99:1568,0,2551
9    136289374    rs2285489    T    C    1485.80    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=106;Dels=0.0;FS=3.623;HRun=0;HaplotypeScore=1.8136;MQ=59.78;MQ0=0;MQRankSum=1.486;QD=14.02;ReadPosRankSum=0.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    0/1:55,51:106:99:1516,0,1672
9    136291063    rs3118667    C    T    621.27    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=42;Dels=0.0;FS=3.254;HRun=0;HaplotypeScore=1.5774;MQ=58.89;MQ0=0;MQRankSum=-1.029;QD=14.79;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=A10;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136291058_136291182;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    0/1:19,23:42:99:651,0,482
9    136291539    rs3118668    A    G    565.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:599,48,0
9    136291594    rs28515121    G    A    210.65    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.566;QD=19.15;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    0/1:3,8:11:89.88:241,0,90
9    136291621    rs28757785    A    T    202.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
9    136298729    rs739469    G    C    193.54    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.77;MQ0=0;MQRankSum=-0.272;QD=10.19;ReadPosRankSum=-1.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371911    GT:AD:DP:GQ:PL    0/1:7,11:19:99:224,0,242
9    136303123    rs2028003    C    G    125.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.191;QD=10.42;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    0/1:6,6:12:99:155,0,219
9    136304497    rs3124768    A    G    707.35    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.528;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.642;QD=9.96;ReadPosRankSum=-0.336;SNPEFF_AMINO_ACID_CHANGE=T244;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136304487_136304567;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536611    GT:AD:DP:GQ:PL    0/1:42,29:71:99:737,0,1348
9    136304728    rs2073934    G    C    85.22    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=9.47;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    0/1:5,4:9:99:115,0,183
9    136305439    rs2073932    G    A    665.31    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.718;DB;DP=33;Dels=0.0;FS=1.56;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.112;QD=20.16;ReadPosRankSum=2.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    0/1:9,24:33:99:695,0,252
9    136311017    rs652600    G    A    64.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=10.77;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338351    GT:AD:DP:GQ:PL    0/1:3,3:6:94.60:95,0,110
9    136324239    rs1055432    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_AMINO_ACID_CHANGE=T1320;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136324096_136324508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAMTS13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356589    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    136328657    rs3124765    T    C    1554.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=28.78;SNPEFF_AMINO_ACID_CHANGE=I30;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136328605_136328677;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444798    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1587,132,0
9    136340200    rs2073935    T    G    162.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=P270;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136340083_136340235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371897    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
9    136379890    rs17758315    A    G    977.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=Y178;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136379708_136379907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339996    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1010,75,0
9    136384162    rs11523307    A    G    544.12    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=4.645;DB;DP=46;Dels=0.0;FS=3.108;HRun=1;HaplotypeScore=0.9734;MQ=58.99;MQ0=0;MQRankSum=-0.753;QD=11.83;ReadPosRankSum=-1.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339996    GT:AD:DP:GQ:PL    0/1:27,19:46:99:574,0,795
9    136385437    rs9802272    A    G    500.03    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.291;DB;DP=38;Dels=0.0;FS=3.79;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.471;QD=13.16;ReadPosRankSum=-2.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339996    GT:AD:DP:GQ:PL    0/1:20,18:38:99:530,0,531
9    136385453    rs9802273    A    G    208.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.344;DB;DP=30;Dels=0.0;FS=2.354;HRun=1;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;MQRankSum=1.124;QD=6.95;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339996    GT:AD:DP:GQ:PL    0/1:20,10:30:99:239,0,572
9    136390015    rs13300181    A    G    97    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=6.93;ReadPosRankSum=1.202;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413714    GT:AD:DP:GQ:PL    0/1:10,4:14:99:127,0,301
9    136401606    rs11507717    A    C    628.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:662,48,0
9    136403754    rs1858838    T    C    71.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
9    136409367    rs9802773    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    136409420    rs9802732    A    G    154.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:187,15,0
9    136409457    rs9802736    A    G    300    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:333,27,0
9    136409580    rs9802778    T    G    1318.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=26.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1352,105,0
9    136409854    rs9330463    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
9    136412013    rs2073873    G    C    1485.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1519,114,0
9    136412170    rs2073874    C    T    6598.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=196;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8293;MQ=58.62;MQ0=0;QD=33.67;SNPEFF_AMINO_ACID_CHANGE=D258;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136412160_136412335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,196:196:99:6598,511,0
9    136412236    rs2073875    A    T    7069.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=205;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7917;MQ=59.21;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=A280;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136412160_136412335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,205:205:99:7070,521,0
9    136412255    rs2073876    A    C    5947.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=190;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3901;MQ=59.15;MQ0=0;QD=31.3;SNPEFF_AMINO_ACID_CHANGE=R287;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136412160_136412335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,190:190:99:5947,475,0
9    136412296    rs2073877    C    T    5750.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=58.93;MQ0=0;QD=35.72;SNPEFF_AMINO_ACID_CHANGE=I300;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136412160_136412335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,161:161:99:5751,421,0
9    136412346    rs2073878    C    T    2935.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.21;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2969,223,0
9    136412382    rs2073879    T    C    1557.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1591,132,0
9    136412454    rs2073880    C    T    540.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354484    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:573,42,0
9    136505114    rs1108580    A    G    447.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=26.34;SNPEFF_AMINO_ACID_CHANGE=E162;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136504968_136505114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393056    GT:AD:DP:GQ:PL    1/1:0,17:17:36.12:481,36,0
9    136505241    rs1108581    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263611    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    136509275    rs1611124    G    T    254.69    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=10.19;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263611    GT:AD:DP:GQ:PL    0/1:14,11:25:99:285,0,463
9    136509312    rs1611125    C    T    752.71    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=42;Dels=0.0;FS=1.286;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.102;QD=17.92;ReadPosRankSum=-1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263611    GT:AD:DP:GQ:PL    0/1:17,25:42:99:783,0,516
9    136509370    rs4531    G    T    841.71    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.576;QD=15.3;ReadPosRankSum=-0.936;SNPEFF_AMINO_ACID_CHANGE=A318S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136509340_136509442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393056    GT:AD:DP:GQ:PL    0/1:26,29:55:99:872,0,767
9    136518097    rs77905    A    G    1740.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=T470;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136518062_136518121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393056    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1773,135,0
9    136550476    rs9409845    C    T    30.22    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.32;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371868    GT:AD:DP:GQ:PL    0/1:5,2:7:60.21:60,0,88
9    136561199    rs35905090    CG    C    202.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=7;HaplotypeScore=27.6257;IndelType=D;MQ=57.39;MQ0=0;QD=22.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371868    GT:AD:DP:GQ:PL    1/1:1,8:9:24.05:245,24,0
9    136561303    rs2502739    A    T    321.37    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=23;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.277;QD=13.97;ReadPosRankSum=-0.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371868    GT:AD:DP:GQ:PL    0/1:11,12:23:99:351,0,348
9    136561367    rs2502740    G    A    621.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=58.89;MQ0=0;MQRankSum=1.11;QD=14.79;ReadPosRankSum=1.728;SNPEFF_AMINO_ACID_CHANGE=S23;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136561345_136561483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371868    GT:AD:DP:GQ:PL    0/1:21,21:42:99:651,0,553
9    136561567    rs2427998    G    T    253.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=16.9;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371868    GT:AD:DP:GQ:PL    0/1:6,9:15:99:284,0,203
9    136568312    rs2427993    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371872    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    136573412    rs2073815    G    A    315.81    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=23;Dels=0.0;FS=10.16;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=13.73;ReadPosRankSum=0.824;SNPEFF_AMINO_ACID_CHANGE=H321;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136573409_136573550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422262    GT:AD:DP:GQ:PL    0/1:13,10:23:99:346,0,352
9    136573648    rs495464    A    T    177.53    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.831;QD=14.79;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535281    GT:AD:DP:GQ:PL    0/1:5,7:12:99:208,0,122
9    136578271    rs582326    G    C    57.61    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=10;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=5.76;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371872    GT:AD:DP:GQ:PL    0/1:7,3:10:87.60:88,0,218
9    136583562    rs118160162    T    C    58.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.82;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393050    GT:AD:DP:GQ:PL    0/1:3,3:6:88.93:89,0,102
9    136584196    rs2027963    T    G    163.73    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=18;Dels=0.0;FS=5.315;HRun=0;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;MQRankSum=-0.337;QD=9.1;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371867    GT:AD:DP:GQ:PL    0/1:9,8:18:99:194,0,289
9    136594864    rs2427988    A    G    699.26    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.759;DB;DP=54;Dels=0.0;FS=4.514;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-1.276;QD=12.95;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298628    GT:AD:DP:GQ:PL    0/1:22,32:54:99:729,0,697
9    136596397    rs916619    G    A    254.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.036;QD=12.14;ReadPosRankSum=1.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298628    GT:AD:DP:GQ:PL    0/1:9,12:21:99:285,0,258
9    136596551    rs149810392    G    A    599.15    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.564;DB;DP=40;Dels=0.0;FS=1.294;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.0;QD=14.98;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=T100I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136596427_136596606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371867    GT:AD:DP:GQ:PL    0/1:19,21:40:99:629,0,500
9    136596750    rs916620    C    T    39.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.9;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298628    GT:AD:DP:GQ:PL    0/1:1,3:4:25.32:70,0,25
9    136599146    rs573904    C    T    329.60    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=-0.317;QD=15.7;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=Q28;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136598965_136599325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393050    GT:AD:DP:GQ:PL    0/1:8,13:21:99:360,0,196
9    136599315    rs2488553    G    A    37.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.46;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SARDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422262    GT:AD:DP:GQ:PL    0/1:3,2:5:66.53:67,0,67
9    136629256    rs66574029    CTG    C    600.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=153.5949;IndelType=D;MQ=60.17;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:6,19:25:54.16:643,54,0
9    136629298    rs2797825    A    G    533.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:567,42,0
9    136629399    rs2797826    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    136633606    rs9722384    G    A    374.54    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.28;MQ0=0;MQRankSum=-0.384;QD=11.7;ReadPosRankSum=1.113;SNPEFF_AMINO_ACID_CHANGE=I810;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136633564_136633718;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406606    GT:AD:DP:GQ:PL    0/1:19,13:32:99:405,0,572
9    136635389    rs55642490    A    G    114.01    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9983;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=16.29;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:1,6:7:15.39:144,0,15
9    136637198    rs653967    C    T    462.64    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=4.062;DB;DP=58;Dels=0.0;FS=1.239;HRun=0;HaplotypeScore=0.0;MQ=55.75;MQ0=0;MQRankSum=-0.649;QD=7.98;ReadPosRankSum=-2.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:36,22:58:99:493,0,880
9    136637242    rs2510244    A    G    103.57    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.239;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.3;MQ0=0;MQRankSum=-0.444;QD=4.71;ReadPosRankSum=0.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:14,8:22:99:134,0,498
9    136640226    rs2488559    G    A    45.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.26;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:76,6,0
9    136641235    rs667183    C    T    158.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=11.34;ReadPosRankSum=1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:8,6:14:99:189,0,249
9    136643994    rs602990    T    C    841.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.2;DB;DP=26;Dels=0.0;FS=3.736;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.333;QD=32.36;ReadPosRankSum=-1.6;SNPEFF_AMINO_ACID_CHANGE=M584V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136643884_136644011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:1,25:26:33.47:874,33,0
9    136645079    rs540626    G    C    326.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.708;DB;DP=27;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.586;QD=12.1;ReadPosRankSum=1.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:15,12:27:99:357,0,407
9    136648483    rs2510232    T    C    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
9    136648535    rs2488563    T    C    200.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:233,18,0
9    136648565    rs680458    G    A    62.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.684;QD=6.97;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:6,3:9:92.71:93,0,159
9    136648606    rs1468128    G    A    482.01    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.9434;MQ=58.45;MQ0=0;QD=32.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:515,42,0
9    136648611    rs56145872    A    AG    560.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=6;HaplotypeScore=120.9849;IndelType=I;MQ=58.63;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:2,15:17:48.15:603,48,0
9    136650740    rs2023665    G    A    37.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:69,6,0
9    136651185    rs2023664    G    A    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:66,0,33
9    136652465    rs2258889    A    G    212.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.683;QD=13.28;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:8,8:16:99:243,0,207
9    136654366    rs45607334    C    T    647.87    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=2.013;DB;DP=50;Dels=0.0;FS=5.959;HRun=0;HaplotypeScore=0.9947;MQ=59.54;MQ0=0;MQRankSum=-0.01;QD=12.96;ReadPosRankSum=-0.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:23,27:50:99:678,0,669
9    136654497    rs2072059    G    A    513.62    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.093;DB;DP=39;Dels=0.0;FS=1.795;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.379;QD=13.17;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:20,19:39:99:544,0,571
9    136654553    rs10821524    A    C    356.46    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.219;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.535;QD=18.76;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:6,13:19:99:386,0,188
9    136657112    .    G    T    48.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-1.537;QD=8.07;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:3,3:6:78.44:78,0,105
9    136657140    rs62576488    G    A    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:100,9,0
9    136662928    rs7865299    A    G    216.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.627;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.892;QD=14.43;ReadPosRankSum=-0.225;SNPEFF_AMINO_ACID_CHANGE=L275;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136662832_136662931;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:6,9:15:99:246,0,171
9    136672493    rs2510246    A    G    91.77    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=7.06;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:9,4:13:99:122,0,300
9    136674312    rs56145512    C    T    169.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=12.09;ReadPosRankSum=-0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:7,7:14:99:199,0,218
9    136804211    rs2073886    G    A    1029.42    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=3.075;DB;DP=74;Dels=0.0;FS=5.467;HRun=1;HaplotypeScore=1.5731;MQ=59.69;MQ0=0;MQRankSum=0.217;QD=13.91;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325440    GT:AD:DP:GQ:PL    0/1:39,35:74:99:1059,0,1129
9    136898627    rs433402    A    G    223.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357885    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:257,21,0
9    136898922    rs443876    G    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357885    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    136907005    rs467387    G    A    240.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_AMINO_ACID_CHANGE=P107;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136906882_136907073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540795    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:273,21,0
9    136907108    rs467317    G    A    95.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303407    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
9    136913123    rs460888    C    G    116.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371842    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
9    136913355    rs464826    T    C    713.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.99;SNPEFF_AMINO_ACID_CHANGE=L312;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_136913205_136913576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303407    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:747,57,0
9    136918662    rs2073818    C    A    211.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494743    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
9    137004907    rs28581991    T    C    258.83    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.05;QD=15.23;ReadPosRankSum=2.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358625    GT:AD:DP:GQ:PL    0/1:6,11:17:99:289,0,195
9    137013226    rs28712232    A    G    121.33    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=17.33;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358625    GT:AD:DP:GQ:PL    0/1:2,5:7:58.97:151,0,59
9    137019415    rs28451195    G    A    178.71    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.8;MQ0=0;MQRankSum=1.059;QD=10.51;ReadPosRankSum=1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358625    GT:AD:DP:GQ:PL    0/1:10,7:17:99:209,0,275
9    137019511    rs28703244    T    C    1187.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.815;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.189;QD=13.81;ReadPosRankSum=0.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358625    GT:AD:DP:GQ:PL    0/1:43,43:86:99:1217,0,1240
9    137019776    rs28694247    G    A    270.90    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.923;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.708;QD=11.78;ReadPosRankSum=0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358625    GT:AD:DP:GQ:PL    0/1:12,11:23:99:301,0,418
9    137293761    rs2234753    G    A    115.31    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=16.47;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RXRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481739    GT:AD:DP:GQ:PL    0/1:2,5:7:65.40:145,0,65
9    137299949    rs1805352    C    A    475.07    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=28;Dels=0.0;FS=3.622;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.216;QD=16.97;ReadPosRankSum=-0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RXRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484822    GT:AD:DP:GQ:PL    0/1:10,18:28:99:505,0,266
9    137313886    .    ATCTCCCAGGACGCTCCCC    A    694    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=4.07;DP=37;FS=3.949;HRun=0;HaplotypeScore=519.7488;IndelType=D;MQ=58.31;MQ0=0;MQRankSum=0.79;QD=18.76;ReadPosRankSum=-1.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RXRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481739    GT:AD:DP:GQ:PL    0/1:27,10:37:99:733,0,2309
9    137320855    rs3118570    G    T    468.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RXRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481739    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:502,39,0
9    137321156    rs1536475    A    G    329.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RXRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481739    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:362,27,0
9    137323657    rs35502253    G    A    110.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.37;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RXRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481739    GT:AD:DP:GQ:PL    0/1:2,4:6:45.04:140,0,45
9    137325822    rs3132293    T    C    154.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RXRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481739    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
9    137328286    rs1805343    G    A    319.65    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.134;DB;DP=21;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.669;QD=15.22;ReadPosRankSum=0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RXRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481739    GT:AD:DP:GQ:PL    0/1:10,11:21:99:350,0,278
9    137592961    rs4341231    T    C    185.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=12;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=15.47;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:4,8:12:99:216,0,136
9    137600270    rs4841925    T    G    342.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.04;FS=0.0;HRun=5;HaplotypeScore=3.9155;MQ=52.75;MQ0=0;QD=12.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    1/1:0,26:26:30.09:376,30,0
9    137600687    rs3128588    C    T    83.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
9    137618970    rs3124298    G    A    117.52    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=57.0;MQ0=0;MQRankSum=0.135;QD=9.79;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:7,5:12:99:148,0,225
9    137619195    rs3124299    C    T    1134.54    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=2.641;DB;DP=59;Dels=0.0;FS=1.027;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.024;QD=19.23;ReadPosRankSum=-0.18;SNPEFF_AMINO_ACID_CHANGE=T246;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_137619112_137619243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:22,37:59:99:1165,0,552
9    137620336    rs3128595    G    A    108.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=12.0;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,150
9    137620474    rs3124302    C    T    831.52    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.388;DB;DP=67;Dels=0.0;FS=2.576;HRun=0;HaplotypeScore=1.7882;MQ=60.0;MQ0=0;MQRankSum=-1.837;QD=12.41;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:35,32:67:99:862,0,1121
9    137622033    rs3124308    A    G    508.81    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.535;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.008;QD=11.83;ReadPosRankSum=0.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:21,22:43:99:539,0,724
9    137622039    rs3128598    G    A    513.94    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=40;Dels=0.0;FS=2.886;HRun=0;HaplotypeScore=1.9889;MQ=59.42;MQ0=0;MQRankSum=-0.433;QD=12.85;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:21,19:40:99:544,0,618
9    137622455    rs3128600    A    C    166.14    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8808;MQ=58.45;MQ0=0;MQRankSum=1.067;QD=11.08;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:5,9:15:99:196,0,157
9    137623193    rs3124309    C    T    39.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.14;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:69,0,34
9    137623555    rs3109675    T    C    137.85    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=8.11;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:11,6:17:99:168,0,362
9    137623601    rs3124310    C    G    56.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=5.6;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:6,4:10:86.03:86,0,225
9    137630568    rs3109677    C    T    609.42    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.337;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;MQRankSum=1.046;QD=8.58;ReadPosRankSum=-0.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:44,26:71:99:639,0,1358
9    137630587    rs3128612    T    C    624.19    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=1.277;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=59.42;MQ0=0;MQRankSum=-0.52;QD=8.67;ReadPosRankSum=0.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:47,25:72:99:654,0,1488
9    137642478    rs12685946    A    G    230.72    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.297;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=10.03;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:12,11:23:99:261,0,329
9    137642577    rs12686426    T    C    96.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=8.74;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:6,5:11:99:126,0,200
9    137645662    rs73558067    C    T    322.54    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.781;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=55.21;MQ0=0;MQRankSum=0.348;QD=12.9;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:12,13:25:99:353,0,389
9    137646046    rs11103501    A    G    31.59    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.0;QD=2.43;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:5,7:13:61.58:62,0,164
9    137646217    rs11103502    G    A    339.43    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.412;DB;DP=19;Dels=0.0;FS=2.185;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.623;QD=17.86;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:6,13:19:99:369,0,194
9    137659005    rs4842160    A    T    32.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=4.06;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:5,3:8:62.45:62,0,177
9    137660194    rs4842162    G    T    553.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.029;DB;DP=38;Dels=0.0;FS=1.512;HRun=0;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;MQRankSum=-1.022;QD=14.58;ReadPosRankSum=1.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:19,19:38:99:584,0,519
9    137660375    rs10776900    A    G    191.62    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=8.71;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:15,7:22:99:222,0,462
9    137664376    rs12685359    T    G    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
9    137672012    rs3124932    C    T    769.32    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=46;Dels=0.0;FS=6.307;HRun=0;HaplotypeScore=2.8663;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=16.72;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:17,29:46:99:799,0,499
9    137686906    rs4072883    C    T    176.27    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=11;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.02;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:3,8:11:94.37:206,0,94
9    137687038    rs4072882    A    G    287.59    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.027;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.507;QD=10.27;ReadPosRankSum=-0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:15,13:28:99:318,0,523
9    137688048    rs10776902    T    C    159.67    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=26.61;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:190,0,23
9    137688577    rs3811161    A    G    192.96    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.442;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;MQRankSum=0.272;QD=10.72;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:7,11:18:99:223,0,239
9    137688624    rs3811160    A    G    394.41    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.525;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.96;MQ0=0;MQRankSum=0.0;QD=17.93;ReadPosRankSum=0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:7,15:22:99:424,0,197
9    137688657    rs3811159    A    G    863.91    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=0.621;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=54.89;MQ0=0;MQRankSum=0.621;QD=18.38;ReadPosRankSum=1.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:15,31:47:99:894,0,337
9    137688780    rs142676375    GCCTGTCCCCTCCAAAACCCA    G    271.56    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=3.566;DB;DP=40;FS=5.684;HRun=0;HaplotypeScore=611.3353;IndelType=D;MQ=56.23;MQ0=0;MQRankSum=-0.872;QD=6.79;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:31,9:40:99:311,0,3088
9    137688863    rs72774465    G    A    318.03    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.98;MQ0=0;MQRankSum=-1.323;QD=18.71;ReadPosRankSum=0.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:3,14:17:77.60:348,0,78
9    137690318    rs4240707    A    T    270.85    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.164;DB;DP=19;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;MQRankSum=0.449;QD=14.26;ReadPosRankSum=1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371817    GT:AD:DP:GQ:PL    0/1:9,10:19:99:301,0,310
9    137715450    rs3128601    C    T    411.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355306    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:444,33,0
9    137717610    rs7868111    T    C    680.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355306    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:713,54,0
9    137717869    rs4842172    C    T    316.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355306    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:350,27,0
9    137722170    rs3128578    G    A    83.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355306    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
9    137772792    rs3128627    C    T    184.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291744    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:217,18,0
9    137774545    rs3124955    T    C    121.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=13.55;ReadPosRankSum=-1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291744    GT:AD:DP:GQ:PL    0/1:4,5:9:99:152,0,142
9    137775139    rs3128624    A    G    263.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.614;DB;DP=30;Dels=0.0;FS=1.536;HRun=2;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=0.064;QD=8.78;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291744    GT:AD:DP:GQ:PL    0/1:18,12:30:99:293,0,494
9    137775155    rs4520243    T    C    314.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.055;DB;DP=35;Dels=0.0;FS=5.287;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.571;QD=8.99;ReadPosRankSum=-0.534;SNPEFF_AMINO_ACID_CHANGE=R36;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_137775148_137775201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350339    GT:AD:DP:GQ:PL    0/1:20,15:35:99:345,0,547
9    137801314    rs2989734    A    G    272.93    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.836;QD=13.0;ReadPosRankSum=0.228;SNPEFF_AMINO_ACID_CHANGE=L262S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_137797736_137801556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371807    GT:AD:DP:GQ:PL    0/1:11,9:20:99:303,0,381
9    137801416    rs2989735    T    C    244.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.038;QD=12.2;ReadPosRankSum=-0.34;SNPEFF_AMINO_ACID_CHANGE=N228S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_137797736_137801556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371807    GT:AD:DP:GQ:PL    0/1:10,10:20:99:274,0,297
9    137801800    rs1071583    T    C    1033.65    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=84;Dels=0.0;FS=6.22;HRun=2;HaplotypeScore=1.7333;MQ=59.45;MQ0=0;MQRankSum=-0.202;QD=12.31;ReadPosRankSum=0.247;SNPEFF_AMINO_ACID_CHANGE=Q275;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_137801431_137801891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371806    GT:AD:DP:GQ:PL    0/1:46,38:84:99:1064,0,1543
9    137803225    rs191183198    T    C    224.52    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.98;MQ0=0;MQRankSum=0.244;QD=13.21;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308299    GT:AD:DP:GQ:PL    0/1:7,10:17:99:255,0,181
9    137804360    rs2274845    A    G    313.35    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.06;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.664;QD=14.92;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=N178;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_137804332_137804461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308299    GT:AD:DP:GQ:PL    0/1:8,13:21:99:343,0,185
9    137804830    rs2070622    G    C    42.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.19;MQ0=1;MQRankSum=1.026;QD=8.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308299    GT:AD:DP:GQ:PL    0/1:3,2:5:65.85:72,0,66
9    137806329    rs35213703    T    TC    209.37    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=18;FS=3.039;HRun=2;HaplotypeScore=75.2282;IndelType=I;MQ=55.31;MQ0=0;MQRankSum=0.725;QD=11.63;ReadPosRankSum=-1.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308299    GT:AD:DP:GQ:PL    0/1:12,6:18:99:248,0,355
9    137806334    rs2989721    A    G    113.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.996;DB;DP=18;Dels=0.0;FS=3.039;HRun=1;HaplotypeScore=0.0;MQ=55.31;MQ0=0;MQRankSum=0.181;QD=6.28;ReadPosRankSum=-1.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308299    GT:AD:DP:GQ:PL    0/1:11,7:18:99:143,0,387
9    137806487    rs2989722    G    A    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.81;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308299    GT:AD:DP:GQ:PL    0/1:2,2:4:68.30:69,0,68
9    137808005    rs2989725    C    A    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308299    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:70,0,63
9    137808427    rs2382714    T    A    85.29    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;MQRankSum=-0.057;QD=5.02;ReadPosRankSum=-0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308299    GT:AD:DP:GQ:PL    0/1:13,4:17:99:115,0,479
9    137967701    rs730539    T    C    54    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=5.4;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252854    GT:AD:DP:GQ:PL    0/1:7,3:10:84:84,0,217
9    137968919    rs61043559    G    GAA    812.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=30.1812;IndelType=I;MQ=60.0;MQ0=0;QD=58.01;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_137968658_137969237;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000371799    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:854,42,0
9    137982127    rs500461    T    C    340.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.248;DB;DP=22;Dels=0.0;FS=1.808;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.182;QD=15.46;ReadPosRankSum=-0.131;SNPEFF_AMINO_ACID_CHANGE=A52;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_137982041_137982190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371796    GT:AD:DP:GQ:PL    0/1:11,11:22:99:370,0,329
9    137987965    .    T    TC    350.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.423;DP=12;FS=7.404;HRun=2;HaplotypeScore=266.9887;IndelType=I;MQ=36.07;MQ0=0;MQRankSum=-0.474;QD=29.24;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252854    GT:AD:DP:GQ:PL    1/1:4,8:12:24.70:393,25,0
9    137998709    rs35408956    T    A    74.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=57.87;MQ0=0;MQRankSum=-0.633;QD=6.77;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252854    GT:AD:DP:GQ:PL    0/1:6,4:11:99:104,0,210
9    138011291    rs11791706    C    A    987.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252854    GT:AD:DP:GQ:PL    1/1:0,33:33:81.22:1021,81,0
9    138236031    rs914398    A    G    238.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.079;DB;DP=25;Dels=0.0;FS=4.624;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.139;QD=9.55;ReadPosRankSum=0.194;SNPEFF_AMINO_ACID_CHANGE=P79;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138235868_138236299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320778    GT:AD:DP:GQ:PL    0/1:15,10:25:99:269,0,452
9    138236212    rs914397    T    G    1010.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=3.0457;MQ=59.36;MQ0=0;QD=28.08;SNPEFF_AMINO_ACID_CHANGE=W140G;SNPEFF_CODON_CHANGE=Tgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138235868_138236299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320778    GT:AD:DP:GQ:PL    1/1:0,36:36:84.24:1044,84,0
9    138236305    rs4842254    T    C    296.11    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.306;QD=12.87;ReadPosRankSum=-0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320778    GT:AD:DP:GQ:PL    0/1:8,15:23:99:326,0,197
9    138377498    rs34151777    G    T    450.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=31;Dels=0.0;FS=3.352;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.995;QD=14.54;ReadPosRankSum=-0.705;SNPEFF_AMINO_ACID_CHANGE=R381L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138376295_138380739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0649;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356818    GT:AD:DP:GQ:PL    0/1:15,15:31:99:481,0,424
9    138378856    rs2078266    A    G    1879.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=N834D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138376295_138380739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0649;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356818    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1912,156,0
9    138379002    rs1975518    T    G    2026.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=P882;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138376295_138380739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0649;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356818    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2059,162,0
9    138387483    rs2274650    G    A    425.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371789    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:459,33,0
9    138391299    rs7037251    T    A    1188.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371789    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1221,93,0
9    138391517    rs2274651    A    C    219.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371789    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:252,21,0
9    138391774    rs2274652    C    T    86.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371791    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
9    138414956    rs56024916    C    T    52.06    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=5.78;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263598    GT:AD:DP:GQ:PL    0/1:6,3:9:82.06:82,0,215
9    138415201    rs56239374    C    G    82.92    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=6.91;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263598    GT:AD:DP:GQ:PL    0/1:7,5:12:99:113,0,210
9    138416919    rs147573053    GC    G    780.70    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=4.574;DB;DP=37;FS=3.842;HRun=4;HaplotypeScore=123.9367;IndelType=D;MQ=61.16;MQ0=0;MQRankSum=1.077;QD=21.1;ReadPosRankSum=-0.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263598    GT:AD:DP:GQ:PL    0/1:10,27:37:99:820,0,312
9    138439290    rs72766537    A    C    58.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.76;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:3,3:6:88.58:89,0,103
9    138439806    rs72766543    C    T    400.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.191;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.572;QD=13.35;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=R123C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138439717_138439827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:12,18:30:99:430,0,329
9    138439809    rs72766544    T    C    410.13    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.702;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.518;QD=15.19;ReadPosRankSum=0.814;SNPEFF_AMINO_ACID_CHANGE=Y124H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138439717_138439827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:11,16:27:99:440,0,309
9    138439904    rs72766546    C    T    64.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=6.45;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:6,4:10:94.50:94,0,173
9    138440554    rs55695858    G    C    728.04    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.23;DB;DP=60;Dels=0.0;FS=8.066;HRun=0;HaplotypeScore=1.581;MQ=59.23;MQ0=0;MQRankSum=1.469;QD=12.13;ReadPosRankSum=-0.768;SNPEFF_AMINO_ACID_CHANGE=V152L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138440489_138440655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:34,26:60:99:758,0,985
9    138440562    rs3178137    C    T    752.49    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.202;DB;DP=61;Dels=0.0;FS=7.679;HRun=1;HaplotypeScore=1.2434;MQ=59.24;MQ0=0;MQRankSum=-1.067;QD=12.34;ReadPosRankSum=0.109;SNPEFF_AMINO_ACID_CHANGE=P110S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138440489_138440655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342114    GT:AD:DP:GQ:PL    0/1:34,27:61:99:782,0,982
9    138440624    rs3827835    G    C    862.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.654;DB;DP=70;Dels=0.0;FS=18.818;HRun=1;HaplotypeScore=1.7323;MQ=58.67;MQ0=0;MQRankSum=-0.162;QD=12.32;ReadPosRankSum=-0.414;SNPEFF_AMINO_ACID_CHANGE=R175P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138440489_138440655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:35,35:70:99:893,0,1104
9    138440641    rs2853652    T    C    841.39    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=60;Dels=0.0;FS=7.414;HRun=0;HaplotypeScore=0.734;MQ=58.84;MQ0=0;MQRankSum=-1.252;QD=14.02;ReadPosRankSum=-1.085;SNPEFF_AMINO_ACID_CHANGE=C181R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138440489_138440655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:28,32:60:99:871,0,864
9    138440726    rs3827838    C    T    389.61    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=57.56;MQ0=0;MQRankSum=-0.536;QD=19.48;ReadPosRankSum=-0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:6,14:20:99:420,0,185
9    138440728    rs3827839    A    G    398.07    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.149;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=57.56;MQ0=0;MQRankSum=-0.132;QD=19.9;ReadPosRankSum=-0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:6,14:20:99:428,0,171
9    138440748    rs3827840    C    T    302.34    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.12;MQ0=0;MQRankSum=-0.352;QD=17.78;ReadPosRankSum=-0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:6,11:17:99:332,0,182
9    138440756    rs3827841    G    A    278.71    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.922;QD=17.42;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:6,10:16:99:309,0,205
9    138440834    rs79288453    C    T    80.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=26.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
9    138440839    rs28634615    C    G    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
9    138440852    rs113790932    C    T    84.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=28.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    138441564    rs59921683    C    T    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:71,0,28
9    138441685    rs112851559    G    GC    231.72    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DB;DP=17;FS=2.158;HRun=5;HaplotypeScore=33.6378;IndelType=I;MQ=52.55;MQ0=0;MQRankSum=1.791;QD=13.63;ReadPosRankSum=-1.555;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_9_138441683_138441802;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OBP2A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000340780    GT:AD:DP:GQ:PL    0/1:9,8:17:99:271,0,181
9    138456254    rs3827842    G    A    74.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.51;MQ0=0;QD=24.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PAEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277508    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
9    138517853    rs1333241    G    C    575.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT6D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371763    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:609,48,0
9    138518010    rs1333240    A    G    1656.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.5449;MQ=53.08;MQ0=0;QD=22.38;SNPEFF_AMINO_ACID_CHANGE=P54;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138517915_138518052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT6D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371763    GT:AD:DP:GQ:PL    1/1:0,74:74:99:1689,147,0
9    138518114    rs11103106    G    A    645.06    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.038;DB;DP=32;Dels=0.0;FS=8.034;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=20.16;ReadPosRankSum=2.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT6D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371763    GT:AD:DP:GQ:PL    0/1:13,19:32:99:675,0,423
9    138518177    rs6537902    C    T    372.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT6D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371763    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:405,30,0
9    138523305    .    GTTC    G    744.03    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.368;DP=34;FS=0.0;HRun=0;HaplotypeScore=235.8291;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=1.175;QD=21.88;ReadPosRankSum=0.958;SNPEFF_AMINO_ACID_CHANGE=E30-;SNPEFF_CODON_CHANGE=gaa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_9_138523277_138523324;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT6D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371763    GT:AD:DP:GQ:PL    0/1:16,18:34:99:783,0,900
9    138523332    rs1333234    C    A    940.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.34;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT6D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371763    GT:AD:DP:GQ:PL    1/1:0,32:32:75.22:973,75,0
9    138523411    rs1333233    C    T    405.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT6D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371763    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:439,33,0
9    138555161    rs10776838    G    A    587.36    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=4.204;DB;DP=39;Dels=0.0;FS=10.372;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.934;QD=15.06;ReadPosRankSum=0.117;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277526    GT:AD:DP:GQ:PL    0/1:19,20:39:99:617,0,474
9    138557256    rs492708    C    T    332.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277526    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
9    138557641    rs138234551    G    A    1223    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.136;DB;DP=71;Dels=0.0;FS=1.057;HRun=0;HaplotypeScore=3.872;MQ=59.68;MQ0=0;MQRankSum=-0.386;QD=17.23;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277526    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1253,0,862
9    138586198    rs572335    G    A    459.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_AMINO_ACID_CHANGE=P327;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138585253_138586303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,17:17:39.10:492,39,0
9    138586309    rs484524    A    G    559.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:592,45,0
9    138586783    rs3119931    G    A    84.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
9    138586854    rs3118655    C    T    133.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:166,12,0
9    138586940    rs55674357    C    A    130.43    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.86;ReadPosRankSum=-1.186;SNPEFF_AMINO_ACID_CHANGE=L277;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138586896_138587109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    0/1:6,5:11:99:160,0,146
9    138586966    rs3119932    G    A    126.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.09;SNPEFF_AMINO_ACID_CHANGE=P269S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138586896_138587109;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:159,12,0
9    138586967    rs3119933    C    A    132.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.08;SNPEFF_AMINO_ACID_CHANGE=G268;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138586896_138587109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:165,12,0
9    138589311    rs7036532    G    A    216.47    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=16.65;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    0/1:6,7:13:99:246,0,184
9    138589353    .    G    C    83.04    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.361;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.546;QD=4.15;ReadPosRankSum=0.509;SNPEFF_AMINO_ACID_CHANGE=R156G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138589352_138589473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    0/1:14,6:20:99:113,0,370
9    138589985    rs505391    A    G    191.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:224,18,0
9    138590138    rs506498    T    C    949.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.41;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,33:33:78.22:982,78,0
9    138590347    rs529976    C    T    781.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:814,60,0
9    138590632    rs532069    G    A    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.15;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:67,0,68
9    138590680    rs474061    G    C    171.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
9    138590928    rs471525    C    T    569.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=R37Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138590841_138590972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:602,45,0
9    138591230    rs558113    C    T    256.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
9    138591266    rs559326    A    G    297.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.06;SNPEFF_AMINO_ACID_CHANGE=P16;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138591249_138591374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOHLH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298466    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:331,27,0
9    138594266    rs5901089    A    AC    491.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=5;HaplotypeScore=71.0867;IndelType=I;MQ=58.18;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298480    GT:AD:DP:GQ:PL    1/1:1,13:14:42.13:533,42,0
9    138642912    rs10122976    C    A    261.47    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=27;Dels=0.0;FS=7.463;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=9.68;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:16,10:27:99:291,0,479
9    138645716    rs12378616    C    T    322.05    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.172;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.098;QD=18.94;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:7,10:17:99:352,0,247
9    138646881    rs4842032    C    T    145.27    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=20.75;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:1,6:7:23.17:175,0,23
9    138656644    rs56382410    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473941    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    138656670    rs56092954    C    T    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473941    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
9    138656707    rs55678700    A    G    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
9    138656783    rs55816769    T    C    68.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.4;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:3,3:6:98.37:98,0,106
9    138656838    rs41298365    A    G    53.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=5.93;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:6,3:9:83.41:83,0,180
9    138657053    rs58604946    T    G    231.49    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.784;DB;DP=36;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=6.43;ReadPosRankSum=0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:26,10:36:99:261,0,687
9    138657171    rs59741818    T    C    52.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.358;QD=8.81;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:2,3:5:66.20:83,0,66
9    138657635    rs10117578    A    G    89.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.361;QD=8.98;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:4,6:10:96.83:120,0,97
9    138660879    rs11103179    A    G    174.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
9    138662309    rs10776844    A    G    1083.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    1/1:0,33:33:87.26:1117,87,0
9    138662360    rs56157148    T    G    270.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.854;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=0.53;QD=15.02;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:9,9:18:99:300,0,235
9    138662661    rs10858172    G    A    119.24    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=17.03;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263604    GT:AD:DP:GQ:PL    0/1:2,5:7:53.27:149,0,53
9    138669261    rs914428    G    A    1543.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=28.59;SNPEFF_AMINO_ACID_CHANGE=T764;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138669184_138669356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000487664    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1577,114,0
9    138703620    .    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312405    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    138710542    .    C    A    138.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.63;MQ0=0;MQRankSum=1.134;QD=11.53;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312405    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,189
9    138754582    rs2039330    A    C    89.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMSAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460094    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
9    138825117    rs6569    A    C    318.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=35.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489050    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
9    138831361    rs35925532    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471163    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
9    138837113    rs10776856    T    C    285.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.66;MQ0=0;MQRankSum=0.751;QD=28.5;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478485    GT:AD:DP:GQ:PL    1/1:1,9:10:24.08:318,24,0
9    138837958    rs2297691    C    T    213.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478485    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
9    138838140    rs7028495    T    C    1128.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=A173;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138838115_138838217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371756    GT:AD:DP:GQ:PL    1/1:0,34:34:87.27:1162,87,0
9    138903671    rs9626    A    G    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_AMINO_ACID_CHANGE=P485;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138903205_138903870;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277554    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    138904997    rs2280485    T    C    73.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.75;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467669    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:104,0,68
9    138905136    rs2280486    C    T    110.99    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.685;QD=5.29;ReadPosRankSum=-0.369;SNPEFF_AMINO_ACID_CHANGE=T388;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_138905045_138905142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277554    GT:AD:DP:GQ:PL    0/1:13,8:21:99:141,0,353
9    138905214    rs2280487    C    G    104.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=13.0;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467669    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,100
9    138905884    rs11103273    T    C    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=9.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467669    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:70,6,0
9    138907998    rs143627408    A    AT    110.85    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=14;FS=0.0;HRun=10;HaplotypeScore=33.5877;IndelType=I;MQ=58.33;MQ0=0;MQRankSum=0.452;QD=7.92;ReadPosRankSum=-0.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467669    GT:AD:DP:GQ:PL    0/1:8,6:14:99:150,0,155
9    139089679    rs7860634    G    A    71.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.89;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325195    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,108
9    139092679    rs4842131    T    C    74.25    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=8.25;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325195    GT:AD:DP:GQ:PL    0/1:5,4:9:99:104,0,136
9    139096722    .    T    C    112.56    PASS    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358701    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
9    139100805    rs9696116    T    C    529.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.447;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.578;MQ=59.48;MQ0=0;MQRankSum=0.718;QD=12.04;ReadPosRankSum=1.205;SNPEFF_AMINO_ACID_CHANGE=P622;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139098179_139101121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358701    GT:AD:DP:GQ:PL    0/1:24,20:44:99:560,0,795
9    139107230    rs10858247    T    C    89.27    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;MQRankSum=0.323;QD=5.25;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358701    GT:AD:DP:GQ:PL    0/1:10,6:17:99:119,0,232
9    139108324    rs10858248    A    G    62.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=6.95;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358701    GT:AD:DP:GQ:PL    0/1:5,4:9:92.51:93,0,181
9    139108359    rs55791344    G    A    168.58    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.984;QD=10.54;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358701    GT:AD:DP:GQ:PL    0/1:9,7:16:99:199,0,262
9    139110654    rs12684650    C    T    494.13    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.287;DB;DP=33;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.162;QD=14.97;ReadPosRankSum=1.639;SNPEFF_AMINO_ACID_CHANGE=K118;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139110525_139110654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389471    GT:AD:DP:GQ:PL    0/1:17,16:33:99:524,0,433
9    139113838    .    GA    G    271.38    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=3.685;DP=27;FS=0.0;HRun=4;HaplotypeScore=66.1222;IndelType=D;MQ=60.51;MQ0=0;MQRankSum=0.363;QD=10.05;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358701    GT:AD:DP:GQ:PL    0/1:16,11:27:99:310,0,549
9    139118515    rs72773794    C    T    452.81    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=14.61;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358701    GT:AD:DP:GQ:PL    0/1:14,17:31:99:483,0,464
9    139230292    rs28447209    T    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354753    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    139230585    rs28583929    T    C    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354753    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
9    139256766    rs3829109    G    A    131.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371732    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
9    139257147    rs10870201    G    C    89.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371732    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
9    139257411    rs10870202    T    C    1216.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=59.42;MQ0=0;QD=30.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315908    GT:AD:DP:GQ:PL    1/1:0,40:40:96.30:1249,96,0
9    139261086    rs10781496    A    G    367.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315908    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:400,30,0
9    139265801    rs115131813    C    T    190.91    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=21.21;ReadPosRankSum=-0.067;SNPEFF_AMINO_ACID_CHANGE=P99;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139265776_139265913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315908    GT:AD:DP:GQ:PL    0/1:2,7:9:46.34:221,0,46
9    139266221    rs4075078    G    A    953.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:986,75,0
9    139266405    rs10781499    G    A    2685.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=P42;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139266347_139266546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315908    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2718,205,0
9    139266496    rs4077515    C    T    1313.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=S12N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139266347_139266546;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315908    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1346,102,0
9    139270606    rs35670379    T    C    81.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
9    139270975    rs3812562    C    T    534.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.095;DB;DP=45;Dels=0.0;FS=3.495;HRun=0;HaplotypeScore=2.4637;MQ=60.0;MQ0=0;MQRankSum=1.431;QD=11.88;ReadPosRankSum=1.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:25,20:45:99:564,0,315
9    139271106    rs3812563    A    G    240.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.17;MQ0=0;QD=24.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:273,21,0
9    139271190    rs3812564    A    G    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
9    139271850    rs11793497    A    G    87.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
9    139271919    rs11791262    C    T    366.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:400,30,0
9    139272058    rs10781507    A    G    835.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.17;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=S1407;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139271995_139273751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:869,66,0
9    139272502    rs3812565    T    C    131.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=L1259;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139271995_139273751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
9    139273288    rs3829112    C    T    78.90    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.0;QD=6.07;ReadPosRankSum=0.825;SNPEFF_AMINO_ACID_CHANGE=E997;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139271995_139273751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:8,5:13:99:109,0,248
9    139273402    rs3812567    C    T    132.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=14.69;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=A959;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139271995_139273751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:4,5:9:84.30:162,0,84
9    139273790    rs3812568    C    A    99.45    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5061;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=8.29;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:7,5:12:99:129,0,241
9    139274523    rs11145793    G    A    113.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.94;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:2,4:6:35.27:144,0,35
9    139274643    rs13297890    C    G    36.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:4,2:6:66.82:67,0,147
9    139275204    rs3812570    A    C    236.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_AMINO_ACID_CHANGE=V829;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139275192_139275302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:269,21,0
9    139275294    rs3812571    G    C    407.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=H799Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139275192_139275302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:440,33,0
9    139276680    rs3812573    C    T    394.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:427,36,0
9    139279173    rs10781510    G    A    1521.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=V473;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139279172_139279266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1554,114,0
9    139281847    rs78428995    T    C    593.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:627,48,0
9    139286296    rs11145850    T    C    104.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:2,4:6:38.14:134,0,38
9    139286844    rs10747031    G    C    214.42    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=14;Dels=0.0;FS=4.15;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=15.32;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:5,9:14:99:244,0,168
9    139287279    rs113704900    C    T    305.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.061;QD=25.45;ReadPosRankSum=1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:3,9:12:29.02:335,0,29
9    139288682    .    C    CT    1572.78    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=7.686;DP=85;FS=0.0;HRun=2;HaplotypeScore=541.4595;IndelType=I;MQ=57.23;MQ0=0;MQRankSum=-1.093;QD=18.5;ReadPosRankSum=-0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    0/1:46,39:85:99:1612,0,1163
9    139289825    rs4266763    A    G    952.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8675;MQ=60.0;MQ0=0;MQRankSum=-1.509;QD=30.73;ReadPosRankSum=1.286;SNPEFF_AMINO_ACID_CHANGE=D132;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139289750_139289875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:1,30:31:62.55:985,63,0
9    139290011    rs11145874    G    A    1161.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:0,38:38:96.29:1194,96,0
9    139290251    rs4498662    C    G    1648.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.505;QD=33.64;ReadPosRankSum=-1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298532    GT:AD:DP:GQ:PL    1/1:1,48:49:97.14:1682,97,0
9    139296485    rs563    A    G    287.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.733;DB;DP=27;Dels=0.0;FS=3.078;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.122;QD=10.65;ReadPosRankSum=-0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461693    GT:AD:DP:GQ:PL    0/1:15,12:27:99:318,0,451
9    139298580    rs1131992    C    T    1279.92    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=78;Dels=0.0;FS=1.904;HRun=0;HaplotypeScore=2.6631;MQ=59.76;MQ0=0;MQRankSum=0.344;QD=16.41;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=V306M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139298507_139298646;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371725    GT:AD:DP:GQ:PL    0/1:34,44:78:99:1310,0,1103
9    139298581    .    G    A    957.57    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DP=78;Dels=0.0;FS=1.962;HRun=0;HaplotypeScore=2.6631;MQ=59.76;MQ0=0;MQRankSum=-0.729;QD=12.28;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=T305;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139298507_139298646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371725    GT:AD:DP:GQ:PL    0/1:46,32:78:99:988,0,1433
9    139298593    rs1051957    A    G    2130.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.554;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=30.88;ReadPosRankSum=-0.125;SNPEFF_AMINO_ACID_CHANGE=G301;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139298507_139298646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371725    GT:AD:DP:GQ:PL    1/1:2,67:69:99:2164,100,0
9    139299637    rs3812577    C    T    856.97    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=4.432;DB;DP=54;Dels=0.0;FS=4.103;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-1.778;QD=15.87;ReadPosRankSum=-0.045;SNPEFF_AMINO_ACID_CHANGE=R231Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139299543_139299654;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371725    GT:AD:DP:GQ:PL    0/1:22,32:54:99:887,0,576
9    139299673    rs3812578    G    C    339.82    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.953;DB;DP=35;Dels=0.0;FS=4.175;HRun=3;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.563;QD=9.71;ReadPosRankSum=0.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371723    GT:AD:DP:GQ:PL    0/1:22,13:35:99:370,0,749
9    139300494    rs11145910    T    C    120.42    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=10.95;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371723    GT:AD:DP:GQ:PL    0/1:6,5:11:99:150,0,176
9    139300547    rs10781518    A    G    68.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371723    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
9    139301583    rs3087886    T    C    513.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371723    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:546,42,0
9    139302049    rs11145915    A    T    30.16    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.72;MQ0=0;MQRankSum=-1.159;QD=3.35;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446833    GT:AD:DP:GQ:PL    0/1:5,4:9:60.15:60,0,101
9    139302094    rs4880155    C    G    313.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.34;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446833    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:346,27,0
9    139302200    rs11145917    C    T    439.75    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.115;DB;DP=25;Dels=0.0;FS=7.005;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.897;QD=17.59;ReadPosRankSum=1.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446833    GT:AD:DP:GQ:PL    0/1:12,13:25:99:470,0,335
9    139303301    rs4487900    A    G    243.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCCAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298537    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
9    139306467    rs10870144    C    T    163.89    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.653;QD=9.64;ReadPosRankSum=-1.055;SNPEFF_AMINO_ACID_CHANGE=Y30;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139306449_139306651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMPCA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371717    GT:AD:DP:GQ:PL    0/1:11,6:17:99:194,0,399
9    139307112    rs146733170    C    G    429.55    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=27;Dels=0.0;FS=4.151;HRun=0;HaplotypeScore=0.0;MQ=60.4;MQ0=0;MQRankSum=-0.655;QD=15.91;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMPCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371717    GT:AD:DP:GQ:PL    0/1:14,13:27:99:460,0,492
9    139307194    rs3841202    T    TA    895.15    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.572;DB;DP=80;FS=1.682;HRun=9;HaplotypeScore=196.1603;IndelType=I;MQ=59.98;MQ0=0;MQRankSum=0.515;QD=11.19;ReadPosRankSum=0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMPCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371717    GT:AD:DP:GQ:PL    0/1:45,35:80:99:934,0,815
9    139312719    rs3812584    T    C    30.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.1;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMPCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371720    GT:AD:DP:GQ:PL    0/1:3,3:6:60.62:61,0,109
9    139313403    rs4604565    G    A    451.09    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=2.756;DB;DP=33;Dels=0.0;FS=5.287;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;MQRankSum=0.054;QD=13.67;ReadPosRankSum=1.639;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMPCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371720    GT:AD:DP:GQ:PL    0/1:17,16:33:99:481,0,522
9    139324740    rs10870182    C    T    31.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.78;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=P597;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139324729_139324865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371712    GT:AD:DP:GQ:PL    0/1:2,2:4:61.11:61,0,68
9    139325641    rs68002978    C    T    219.94    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=1.656;QD=16.92;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371712    GT:AD:DP:GQ:PL    0/1:6,7:13:99:250,0,123
9    139326304    rs10870188    G    A    170.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.101;DB;DP=24;Dels=0.0;FS=2.696;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;MQRankSum=0.239;QD=7.1;ReadPosRankSum=1.61;SNPEFF_AMINO_ACID_CHANGE=H507;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139326276_139326437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371712    GT:AD:DP:GQ:PL    0/1:15,9:24:99:200,0,412
9    139327439    rs10781542    A    G    285.61    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.401;QD=20.4;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=T416;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139327408_139327527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371712    GT:AD:DP:GQ:PL    0/1:3,11:14:84.74:316,0,85
9    139328369    rs10781543    T    C    45.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371712    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
9    139328551    rs10870199    T    C    41.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.88;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=P324;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139328489_139328586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371712    GT:AD:DP:GQ:PL    0/1:2,4:6:71.30:71,0,71
9    139341529    rs35600321    CA    C    224.50    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=2.91;DB;DP=29;FS=2.269;HRun=10;HaplotypeScore=79.744;IndelType=D;MQ=59.2;MQ0=0;MQRankSum=0.082;QD=7.74;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277537    GT:AD:DP:GQ:PL    0/1:16,13:29:99:264,0,323
9    139342482    .    C    A    671.33    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=2.032;DP=76;Dels=0.0;FS=3.537;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.021;QD=8.83;ReadPosRankSum=-1.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277537    GT:AD:DP:GQ:PL    0/1:47,29:76:99:701,0,1653
9    139347778    rs11146030    A    G    300.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.592;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=15.03;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277537    GT:AD:DP:GQ:PL    0/1:8,12:20:99:331,0,238
9    139357279    rs10870067    G    A    75.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.55;QD=9.47;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472305    GT:AD:DP:GQ:PL    0/1:3,5:8:59.73:106,0,60
9    139358059    rs11145753    G    A    1221.75    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.268;DB;DP=103;Dels=0.0;FS=1.61;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.678;QD=11.86;ReadPosRankSum=0.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290037    GT:AD:DP:GQ:PL    0/1:56,47:103:99:1252,0,1633
9    139360354    rs3124590    A    G    645.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290037    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:679,57,0
9    139371234    rs10781497    G    A    402.13    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=31;Dels=0.0;FS=3.453;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.419;QD=12.97;ReadPosRankSum=-0.586;SNPEFF_AMINO_ACID_CHANGE=D100;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139368501_139371533;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC16A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290037    GT:AD:DP:GQ:PL    0/1:18,13:31:99:432,0,468
9    139371786    rs6560632    A    C    1350.71    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=81;Dels=0.0;FS=7.509;HRun=0;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;MQRankSum=0.424;QD=16.68;ReadPosRankSum=-0.872;SNPEFF_AMINO_ACID_CHANGE=V94;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139368501_139372141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC16A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313050    GT:AD:DP:GQ:PL    0/1:35,46:81:99:1381,0,1183
9    139390397    rs3124591    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    139391338    rs61751489    C    T    326.79    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.571;DB;DP=25;Dels=0.0;FS=3.862;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.245;QD=13.07;ReadPosRankSum=-0.68;SNPEFF_AMINO_ACID_CHANGE=V2285I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139388896_139392010;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:12,13:25:99:357,0,347
9    139391555    .    G    A    222.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.31;DP=21;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=10.57;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=D2212;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139388896_139392010;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:12,9:21:99:252,0,276
9    139391636    rs2229974    G    A    894.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=D2185;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139388896_139392010;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,27:28:69.22:928,69,0
9    139393162    rs3124592    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494783    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
9    139393175    rs3124593    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494783    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
9    139395311    rs11574908    G    A    181.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=18.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494783    GT:AD:DP:GQ:PL    0/1:4,6:10:99:212,0,100
9    139396408    rs3124594    A    G    1434.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=30.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494783    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1467,123,0
9    139397707    rs10521    G    A    843.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_AMINO_ACID_CHANGE=D1698;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139397634_139397782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,29:29:66.20:877,66,0
9    139401504    rs3124596    G    A    124.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
9    139402663    rs3124597    T    C    665.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:698,51,0
9    139402908    rs3812603    T    C    597.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:630,54,0
9    139402959    rs3812604    A    G    280.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
9    139403554    rs3124598    T    C    78.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
9    139405261    rs3125001    C    T    327.76    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.239;DB;DP=21;Dels=0.0;FS=8.318;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.959;QD=15.61;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:9,12:21:99:358,0,199
9    139405361    rs3125002    A    G    70.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.12;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,140
9    139405501    rs9411206    A    G    336.02    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.128;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.2;QD=14.0;ReadPosRankSum=-0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:10,14:24:99:366,0,345
9    139407452    rs3812608    C    T    112.97    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=16.14;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:2,5:7:52.41:143,0,52
9    139407932    rs2229971    A    G    236.63    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=19;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.612;QD=12.45;ReadPosRankSum=0.531;SNPEFF_AMINO_ACID_CHANGE=N755;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139407844_139407989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:9,10:19:99:267,0,323
9    139409648    rs62579232    G    A    106.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.16;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:3,4:7:91.17:136,0,91
9    139410424    rs3125006    A    G    554.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:587,51,0
9    139410589    rs4880099    A    G    220.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:253,18,0
9    139412073    rs4077029    T    C    35.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.78;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:2,2:4:65.11:65,0,71
9    139412197    rs9411208    G    A    424.60    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.355;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.767;QD=14.64;ReadPosRankSum=1.864;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491649    GT:AD:DP:GQ:PL    0/1:16,13:29:99:455,0,411
9    139413097    .    T    G    47.36    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DP=14;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=40.36;MQ0=0;MQRankSum=-2.219;QD=3.38;ReadPosRankSum=0.729;SNPEFF_AMINO_ACID_CHANGE=T349P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139413043_139413276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:4,10:14:77.36:77,0,131
9    139418260    rs4489420    A    G    148.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=16;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.323;QD=9.31;ReadPosRankSum=1.097;SNPEFF_AMINO_ACID_CHANGE=N104;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139418169_139418431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277541    GT:AD:DP:GQ:PL    0/1:8,8:16:99:179,0,210
9    139563144    rs2297535    C    A    880.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371694    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:914,69,0
9    139564668    rs2297538    G    A    683.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=V153I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139564621_139564782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFL7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308874    GT:AD:DP:GQ:PL    1/1:0,22:22:54.15:717,54,0
9    139566823    rs1051828    A    G    216.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371694    GT:AD:DP:GQ:PL    1/1:0,10:10:18.06:249,18,0
9    139571909    .    G    A    564.69    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.183;DP=35;Dels=0.0;FS=3.084;HRun=1;HaplotypeScore=0.8321;MQ=59.34;MQ0=0;MQRankSum=-1.083;QD=16.13;ReadPosRankSum=-1.583;SNPEFF_AMINO_ACID_CHANGE=I94;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139571875_139572008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371694    GT:AD:DP:GQ:PL    0/1:15,20:35:99:595,0,375
9    139572068    rs2236514    C    G    180.02    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=11;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=16.37;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGFL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308874    GT:AD:DP:GQ:PL    0/1:5,6:11:99:210,0,106
9    139581529    rs118017936    G    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371694    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
9    139616742    rs945384    A    G    480.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=S158G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139616577_139616753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371692    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:513,39,0
9    139617662    rs11849    T    C    551.38    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=0.803;DB;DP=29;Dels=0.0;FS=1.462;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.895;QD=19.01;ReadPosRankSum=-0.344;SNPEFF_AMINO_ACID_CHANGE=L157;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139617414_139618502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:10,19:29:99:581,0,312
9    139617836    rs6874    C    T    484.78    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.759;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.525;QD=15.15;ReadPosRankSum=1.421;SNPEFF_AMINO_ACID_CHANGE=N215;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139617414_139618502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:12,20:32:99:515,0,333
9    139620637    rs72761016    G    A    309.22    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.173;DB;DP=27;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=11.45;ReadPosRankSum=0.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:16,11:27:99:339,0,525
9    139620695    rs2275161    C    T    91.33    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=6.09;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:10,5:15:99:121,0,250
9    139620917    rs10870115    C    T    35.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.69;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:65,0,23
9    139620966    rs11145848    C    T    36.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=0.736;QD=12.22;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:67,0,24
9    139620999    rs4880065    T    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
9    139621107    rs138866217    AG    A    143.81    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;FS=3.522;HRun=1;HaplotypeScore=56.5839;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=2.219;QD=15.98;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:4,5:9:99:183,0,157
9    139621120    rs10781513    A    G    167.73    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.717;QD=15.25;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:5,6:11:99:198,0,121
9    139621167    .    C    G    212.48    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.442;QD=11.18;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:10,9:19:99:242,0,319
9    139621168    rs2275160    G    A    288    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=14.4;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371691    GT:AD:DP:GQ:PL    0/1:10,10:20:99:318,0,282
9    139639532    rs145717467    CGGCCCACGCACCACACAGCTCCCAACGTGGGCCCCGAGT    C    1254.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=623.5804;IndelType=D;MQ=51.35;MQ0=0;QD=73.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341206    GT:AD:DP:GQ:PL    1/1:1,16:17:45.09:1297,45,0
9    139642106    rs117599378    A    C    58.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=49.17;MQ0=0;MQRankSum=-0.988;QD=8.31;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LCN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341206    GT:AD:DP:GQ:PL    0/1:4,3:7:81.71:88,0,82
9    139642961    rs2811728    G    A    62.34    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=7.79;ReadPosRankSum=1.3;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_9_139642846_139642980;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LCN6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341206    GT:AD:DP:GQ:PL    0/1:5,3:8:92.33:92,0,104
9    139649580    rs879467    G    A    145.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=24.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:179,15,0
9    139650060    rs2784068    C    A    460.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:493,39,0
9    139651163    rs76959676    A    AG    538.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=33.8043;IndelType=I;MQ=61.53;MQ0=0;QD=38.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:581,42,0
9    139652080    rs2784067    C    G    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
9    139652338    rs9411272    C    G    835.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:868,66,0
9    139656618    rs2484658    T    C    30.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
9    139656670    rs2297722    T    C    151.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.3;SNPEFF_AMINO_ACID_CHANGE=K164E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139656640_139656741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:185,15,0
9    139656706    rs2297723    A    C    130.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.69;SNPEFF_AMINO_ACID_CHANGE=S152A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139656640_139656741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:163,12,0
9    139657834    rs9987876    G    C    909.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=29.33;SNPEFF_AMINO_ACID_CHANGE=A131;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139657809_139657919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,31:31:72.20:942,72,0
9    139658051    rs4880070    G    T    320.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,12:12:30.06:353,30,0
9    139658576    rs4880140    G    C    198.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316144    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
9    139690840    rs1055995    G    A    109.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290079    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:142,12,0
9    139697340    rs2811791    G    A    70.13    MQFilter40    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.35;MQ0=10;MQRankSum=1.256;QD=2.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456614    GT:AD:DP:GQ:PL    0/1:17,7:24:29.19:100,0,29
9    139697540    rs9775751    C    T    57.80    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9965;MQ=41.77;MQ0=6;MQRankSum=1.683;QD=3.85;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456614    GT:AD:DP:GQ:PL    0/1:12,3:15:87.79:88,0,195
9    139699964    rs2811793    T    C    170.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456614    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:203,15,0
9    139700605    rs2811795    T    C    70.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=23.65;SNPEFF_AMINO_ACID_CHANGE=W342R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139700530_139700690;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1984;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338005    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:103,9,0
9    139701108    rs2254143    A    C    1129.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=N421T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139700956_139701124;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1984;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338005    GT:AD:DP:GQ:PL    1/1:0,34:34:90.28:1163,90,0
9    139701666    rs2784098    G    A    90.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1984;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371682    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
9    139701983    rs3739944    C    G    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1984;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371682    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:123,9,0
9    139702908    rs7864908    C    T    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1984;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    139726239    rs2811748    A    G    1078.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_AMINO_ACID_CHANGE=G137;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139726173_139726313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf86;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432842    GT:AD:DP:GQ:PL    1/1:0,36:38:93.27:1112,93,0
9    139731969    rs2811742    C    T    123.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.77;SNPEFF_AMINO_ACID_CHANGE=A121;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139729623_139732114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf86;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435930    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
9    139732331    rs2811741    G    C    75.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_AMINO_ACID_CHANGE=E176Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139732314_139732467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf86;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435930    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
9    139732462    rs2811740    C    T    35.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.77;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=S219;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139732314_139732467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C9orf86;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435930    GT:AD:DP:GQ:PL    0/1:2,2:4:48.01:65,0,48
9    139739643    rs10870132    T    C    259.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.79;SNPEFF_AMINO_ACID_CHANGE=P259;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139738867_139741797;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf172;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436881    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:292,24,0
9    139744807    rs872463    A    G    133.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf172;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436881    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
9    139746992    rs10123375    G    A    1216.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247665    GT:AD:DP:GQ:PL    1/1:0,32:32:96.30:1249,96,0
9    139748483    rs45449193    G    A    903.75    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.411;DB;DP=55;Dels=0.0;FS=8.472;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.621;QD=16.43;ReadPosRankSum=0.114;SNPEFF_AMINO_ACID_CHANGE=A209T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139748444_139748528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAMDC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317446    GT:AD:DP:GQ:PL    0/1:20,35:55:99:934,0,632
9    139749067    rs7869864    C    T    216.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_AMINO_ACID_CHANGE=R291;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139748991_139749128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAMDC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317446    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:250,18,0
9    139752899    rs2275156    T    G    713.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6988;MQ=59.2;MQ0=0;QD=24.59;SNPEFF_AMINO_ACID_CHANGE=W908G;SNPEFF_CODON_CHANGE=Tgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139752852_139752998;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAMDC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317446    GT:AD:DP:GQ:PL    1/1:0,27:29:57.16:746,57,0
9    139754110    rs2236544    G    A    82.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224073    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
9    139756477    rs945385    G    A    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224073    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
9    139760431    rs7025238    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224073    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
9    139793845    rs1800631    C    A    76.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247668    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
9    139804274    rs4567138    G    A    159.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419057    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
9    139804346    rs4448378    C    T    511.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419057    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:545,42,0
9    139804679    rs4880158    T    C    51.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419057    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
9    139815053    rs10781522    G    A    116.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469701    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
9    139820421    rs7852970    G    A    533.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466107    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:567,45,0
9    139837700    rs11339872    AC    A    102.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=8;FS=0.0;HRun=11;HaplotypeScore=32.9209;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.742;QD=12.86;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXW5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325285    GT:AD:DP:GQ:PL    1/1:2,6:8:16.41:145,16,0
9    139837990    rs2271872    G    C    114.29    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=14.29;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXW5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325285    GT:AD:DP:GQ:PL    0/1:1,7:8:23.71:144,0,24
9    139839904    rs2071006    T    G    102.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=14.58;ReadPosRankSum=-1.754;SNPEFF_AMINO_ACID_CHANGE=A44;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139839713_139839910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000224181    GT:AD:DP:GQ:PL    0/1:3,4:7:94.77:132,0,95
9    139840471    rs7862602    G    T    114.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.42;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224181    GT:AD:DP:GQ:PL    0/1:4,6:10:99:144,0,108
9    139840521    rs41307442    T    C    97.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.951;QD=9.76;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224181    GT:AD:DP:GQ:PL    0/1:5,5:10:99:128,0,164
9    139840543    rs7850844    A    G    369.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=D118G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139840537_139840644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000224181    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:403,30,0
9    139840560    rs17613    C    A    168.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=14;Dels=0.0;FS=5.756;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=12.07;ReadPosRankSum=0.935;SNPEFF_AMINO_ACID_CHANGE=H124N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139840537_139840644;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000224181    GT:AD:DP:GQ:PL    0/1:7,7:14:99:199,0,173
9    139840580    rs20574    C    T    186.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=14;Dels=0.0;FS=5.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.381;QD=13.31;ReadPosRankSum=-0.696;SNPEFF_AMINO_ACID_CHANGE=T130;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139840537_139840644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000224181    GT:AD:DP:GQ:PL    0/1:6,8:14:99:216,0,140
9    139840859    rs908830    T    C    115.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371634    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
9    139841212    rs41309980    T    C    40.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=5.79;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C8G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371634    GT:AD:DP:GQ:PL    0/1:4,3:7:70.52:71,0,73
9    139847500    rs34635210    G    A    567.74    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=55.92;MQ0=0;MQRankSum=-0.546;QD=16.22;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371632    GT:AD:DP:GQ:PL    0/1:16,19:35:99:598,0,386
9    139847570    rs884218    T    C    137.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484304    GT:AD:DP:GQ:PL    1/1:0,9:9:15.04:171,15,0
9    139848688    rs4880175    C    T    168.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.1;SNPEFF_AMINO_ACID_CHANGE=S86L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139848606_139848707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LCN12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371632    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
9    139863732    rs908829    G    C    81.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.04;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_139863695_139863925;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371629    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
9    139863777    rs11793934    G    A    290.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_9_139863695_139863925;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371629    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:323,24,0
9    139863841    rs11787585    C    T    295.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.61;SNPEFF_AMINO_ACID_CHANGE=L8F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139863695_139863925;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371629    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:328,24,0
9    139863909    rs11787588    C    T    194.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=S30;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139863695_139863925;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf141;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371629    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:227,18,0
9    139864341    rs2386136    A    G    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.48;SNPEFF_AMINO_ACID_CHANGE=Q37R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139864338_139864511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371629    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
9    139864438    rs12351283    G    C    196.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=28.05;SNPEFF_AMINO_ACID_CHANGE=A69;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139864338_139864511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf141;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371629    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:229,18,0
9    139865825    rs7033713    A    C    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371629    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
9    139866247    rs11790360    T    G    388.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.88;SNPEFF_AMINO_ACID_CHANGE=W220G;SNPEFF_CODON_CHANGE=Tgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139865950_139866442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf141;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371629    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:421,33,0
9    139872048    rs4880179    A    G    200.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.31;SNPEFF_AMINO_ACID_CHANGE=T6;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139871956_139872144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000224167    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:234,18,0
9    139875318    .    C    CCATT    455.88    PASS    AC=2;AF=1.00;AN=2;DP=13;FS=0.0;HRun=0;HaplotypeScore=44.408;IndelType=I;MQ=60.83;MQ0=0;QD=35.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371623    GT:AD:DP:GQ:PL    1/1:6,7:13:21.07:498,21,0
9    139877698    rs968516    A    C    490.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224167    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:524,39,0
9    139878317    rs7029565    C    T    279.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224167    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:312,24,0
9    139878828    rs4880082    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224167    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
9    139879067    rs2049042    T    C    115.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224167    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
9    139879113    rs2049041    G    A    207.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224167    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
9    139887298    rs3833710    C    CT    783.62    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.286;DB;DP=40;FS=2.125;HRun=1;HaplotypeScore=96.3825;IndelType=I;MQ=59.7;MQ0=0;MQRankSum=-0.528;QD=19.59;ReadPosRankSum=-1.086;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLIC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456673    GT:AD:DP:GQ:PL    0/1:19,21:40:99:823,0,544
9    139903352    rs112497112    G    GC    320.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=7;HaplotypeScore=41.2101;IndelType=I;MQ=58.88;MQ0=0;QD=29.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431584    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:362,30,0
9    139904037    rs7048567    A    G    1171.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_AMINO_ACID_CHANGE=L131;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139903993_139904096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398210    GT:AD:DP:GQ:PL    1/1:0,40:40:96.27:1204,96,0
9    139906359    rs2271862    G    A    168.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=11.21;ReadPosRankSum=0.295;SNPEFF_AMINO_ACID_CHANGE=H1823;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139906296_139906470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371605    GT:AD:DP:GQ:PL    0/1:9,6:15:99:198,0,286
9    139906513    rs2271863    T    C    599.98    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.79;DB;DP=43;Dels=0.0;FS=1.267;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=13.95;ReadPosRankSum=-0.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488535    GT:AD:DP:GQ:PL    0/1:17,26:43:99:630,0,362
9    139908139    rs10870162    A    G    68.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.13;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466707    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:99,0,30
9    139908265    rs10781531    T    C    271.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466707    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:305,24,0
9    139909014    rs10781532    C    T    167.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464876    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
9    139910648    rs6560657    T    C    617.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.99;MQ0=0;QD=26.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464876    GT:AD:DP:GQ:PL    1/1:0,23:23:57.14:651,57,0
9    139912178    rs879854    G    A    302.50    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.04;DB;DP=30;Dels=0.0;FS=19.638;HRun=0;HaplotypeScore=0.9159;MQ=59.23;MQ0=0;MQRankSum=0.027;QD=10.08;ReadPosRankSum=-0.136;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398207    GT:AD:DP:GQ:PL    0/1:16,14:30:99:332,0,447
9    139912484    rs908832    A    G    483.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_AMINO_ACID_CHANGE=D678;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139912425_139912527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371605    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:516,42,0
9    139913239    rs908828    T    G    701.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=H583P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139913171_139913267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371605    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:734,57,0
9    139923265    rs4880189    A    G    200.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.468;QD=16.71;ReadPosRankSum=1.835;SNPEFF_AMINO_ACID_CHANGE=A20;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139923169_139923374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355090    GT:AD:DP:GQ:PL    0/1:4,8:12:99:231,0,100
9    139926402    rs7469569    T    C    418.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.749;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.083;QD=16.73;ReadPosRankSum=0.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf139;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314330    GT:AD:DP:GQ:PL    0/1:10,15:25:99:448,0,299
9    139929015    rs9411293    C    G    91.28    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.673;DB;DP=38;Dels=0.0;FS=4.16;HRun=0;HaplotypeScore=0.9332;MQ=58.78;MQ0=0;MQRankSum=-0.513;QD=2.4;ReadPosRankSum=-1.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371600    GT:AD:DP:GQ:PL    0/1:28,10:38:99:121,0,995
9    139929080    rs41317014    C    T    380.07    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=58;Dels=0.0;FS=2.599;HRun=0;HaplotypeScore=2.1445;MQ=58.8;MQ0=0;MQRankSum=0.923;QD=6.55;ReadPosRankSum=0.284;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371600    GT:AD:DP:GQ:PL    0/1:43,15:58:99:410,0,1297
9    139937795    rs10781535    T    C    203.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=25.44;SNPEFF_AMINO_ACID_CHANGE=D26G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139937379_139938544;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371600    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:236,18,0
9    139937799    rs10781536    G    A    201.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=28.75;SNPEFF_AMINO_ACID_CHANGE=R25*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_9_139937379_139938544;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPDC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000371600    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
9    139940653    rs28705707    C    A    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312665    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    139944496    rs10870169    T    C    745.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=37.72;MQ0=0;QD=20.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    1/1:0,36:37:80.92:779,81,0
9    139944509    rs10735661    T    C    900.75    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5572;MQ=30.71;MQ0=0;MQRankSum=4.402;QD=18.38;ReadPosRankSum=3.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    1/1:8,41:49:92.95:934,93,0
9    139944580    rs12005251    A    G    43.72    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=1.998;DB;DP=108;Dels=0.0;FS=26.526;HRun=0;HaplotypeScore=15.7942;MQ=27.97;MQ0=22;MQRankSum=-0.019;QD=0.4;ReadPosRankSum=-1.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    0/1:78,29:108:73.71:74,0,1020
9    139944588    rs7869655    T    C    1293.70    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DB;DP=118;Dels=0.0;FS=15.392;HRun=1;HaplotypeScore=19.8551;MQ=27.83;MQ0=22;MQRankSum=1.572;QD=10.96;ReadPosRankSum=4.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    1/1:26,91:118:21.30:1327,21,0
9    139944617    rs10870170    T    C    437.06    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=4.595;DB;DP=225;Dels=0.0;FS=2.636;HRun=3;HaplotypeScore=47.443;MQ=22.78;MQ0=24;MQRankSum=0.77;QD=1.94;ReadPosRankSum=0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    0/1:143,82:225:99:467,0,1011
9    139944624    rs7860436    C    T    73.75    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.783;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=44.3972;MQ=21.27;MQ0=22;MQRankSum=-0.193;QD=0.29;ReadPosRankSum=2.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    0/1:219,30:250:99:104,0,1185
9    139944652    rs7848899    G    A    275.16    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.883;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.575;DB;DP=248;DS;Dels=0.01;FS=13.529;HRun=0;HaplotypeScore=97.454;MQ=21.75;MQ0=20;MQRankSum=3.946;QD=1.1;ReadPosRankSum=-2.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    0/1:211,28:248:99:305,0,890
9    139944653    rs12005729    T    C    311.16    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.6;DB;DP=249;DS;Dels=0.0;FS=6.431;HRun=3;HaplotypeScore=94.5805;MQ=22.05;MQ0=20;MQRankSum=-1.364;QD=1.24;ReadPosRankSum=0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    0/1:128,120:249:99:341,0,777
9    139944660    .    C    T    41.36    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.94;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.1;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=86.2223;MQ=21.91;MQ0=16;MQRankSum=1.351;QD=0.17;ReadPosRankSum=1.086;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    0/1:234,15:249:71.35:71,0,1179
9    139944688    rs45623536    G    A    304.77    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.168;DB;DP=247;DS;Dels=0.0;FS=16.006;HRun=0;HaplotypeScore=85.1414;MQ=25.96;MQ0=3;MQRankSum=2.13;QD=1.23;ReadPosRankSum=-3.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    0/1:209,35:247:99:335,0,1318
9    139944689    rs7869777    T    C    616.40    HaplotypeScoreFilter13;MQFilter40    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.816;DB;DP=248;DS;Dels=0.0;FS=2.12;HRun=3;HaplotypeScore=85.1414;MQ=26.66;MQ0=2;MQRankSum=-2.1;QD=2.49;ReadPosRankSum=1.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469106    GT:AD:DP:GQ:PL    0/1:107,138:248:99:646,0,938
9    139944736    rs4880083    C    G    1024.92    HaplotypeScoreFilter13;MQFilter40    AB=0.168;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.216;DB;DP=246;DS;Dels=0.0;FS=5.382;HRun=0;HaplotypeScore=75.404;MQ=33.56;MQ0=0;MQRankSum=-6.945;QD=4.17;ReadPosRankSum=-4.22;SNPEFF_AMINO_ACID_CHANGE=V343;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139944736_139944990;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312665    GT:AD:DP:GQ:PL    0/1:41,203:246:99:1055,0,1017
9    139945051    rs7869520    A    G    307.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=27.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312665    GT:AD:DP:GQ:PL    1/1:0,11:11:27.06:340,27,0
9    139945363    rs2292925    G    A    185    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=20.56;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=S255;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139945354_139945581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312665    GT:AD:DP:GQ:PL    0/1:3,6:9:46.05:215,0,46
9    139946804    rs2271867    C    G    1292.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.48;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312665    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1325,108,0
9    139946905    rs34679600    C    CA    152.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=53.5105;IndelType=I;MQ=59.85;MQ0=0;MQRankSum=0.573;QD=16.97;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312665    GT:AD:DP:GQ:PL    0/1:3,6:9:22.56:192,0,23
9    139946916    rs11145979    G    A    196.11    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.65;MQ0=0;MQRankSum=0.742;QD=24.51;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312665    GT:AD:DP:GQ:PL    0/1:2,6:8:6.60:226,0,7
9    139959292    rs9314873    C    G    50.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=7.2;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409687    GT:AD:DP:GQ:PL    0/1:4,3:7:80.38:80,0,114
9    139959853    rs4880195    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409687    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
9    139960177    rs4880086    C    T    111.86    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=3.826;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.425;QD=2.49;ReadPosRankSum=0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409687    GT:AD:DP:GQ:PL    0/1:26,19:45:99:142,0,774
9    139960178    rs2176674    A    G    1165.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409687    GT:AD:DP:GQ:PL    1/1:0,45:45:96.17:1198,96,0
9    139973186    rs7390974    T    C    235.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360271    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:269,21,0
9    139973236    rs7873997    T    C    150.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360271    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
9    139973629    rs7390710    A    C    469.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.47;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476184    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:502,42,0
9    139973652    rs7390711    A    G    244.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=47.12;MQ0=0;QD=17.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476184    GT:AD:DP:GQ:PL    1/1:0,13:14:24.05:278,24,0
9    139975108    rs9314874    T    C    2014.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8268;MQ=59.66;MQ0=0;QD=29.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476184    GT:AD:DP:GQ:PL    1/1:0,67:68:99:2047,156,0
9    139975195    rs41302685    C    T    859.22    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DB;DP=59;Dels=0.0;FS=1.038;HRun=0;HaplotypeScore=0.8321;MQ=59.68;MQ0=0;MQRankSum=1.268;QD=14.56;ReadPosRankSum=0.319;SNPEFF_AMINO_ACID_CHANGE=N288;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139975141_139975326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UAP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360271    GT:AD:DP:GQ:PL    0/1:30,28:59:99:889,0,750
9    139981627    rs968733    A    G    135.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.52;SNPEFF_AMINO_ACID_CHANGE=N59S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_139981379_139981670;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371589    GT:AD:DP:GQ:PL    1/1:0,5:6:12.04:168,12,0
9    139982868    rs3750518    C    T    2319.78    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.364;DB;DP=156;Dels=0.0;FS=0.655;HRun=0;HaplotypeScore=0.5784;MQ=59.73;MQ0=0;MQRankSum=-0.469;QD=14.87;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360271    GT:AD:DP:GQ:PL    0/1:70,86:156:99:2350,0,2075
9    139990906    rs4880199    T    C    129.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=12.99;ReadPosRankSum=-1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545539    GT:AD:DP:GQ:PL    0/1:4,6:10:99:160,0,138
9    139994102    rs4880200    G    A    787.85    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=3.358;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.608;QD=16.41;ReadPosRankSum=-0.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545539    GT:AD:DP:GQ:PL    0/1:23,25:48:99:818,0,573
9    139996536    .    T    TACAC    313.03    QDFilter2    AB=0.971;AC=1;AF=0.50;AN=2;BaseQRankSum=7.512;DP=232;FS=66.39;HRun=0;HaplotypeScore=1948.5879;IndelType=I;MQ=55.02;MQ0=0;MQRankSum=-7.011;QD=1.34;ReadPosRankSum=-1.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:227,7:232:99:352,0,10113
9    139996543    .    T    TCACA    537.88    PASS    AB=0.96;AC=1;AF=0.50;AN=2;BaseQRankSum=7.945;DP=239;FS=76.946;HRun=0;HaplotypeScore=2108.2389;IndelType=I;MQ=54.55;MQ0=0;MQRankSum=-7.495;QD=2.24;ReadPosRankSum=-0.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:230,10:239:99:577,0,12178
9    139996570    .    T    TAC    620.96    PASS    AB=0.912;AC=1;AF=0.50;AN=2;BaseQRankSum=9.421;DP=244;DS;FS=74.543;HRun=0;HaplotypeScore=2408.6874;IndelType=I;MQ=51.1;MQ0=0;MQRankSum=-9.002;QD=2.49;ReadPosRankSum=1.798;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:225,21:244:99:660,0,7404
9    139996604    .    C    G    92.72    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.915;DP=223;DS;Dels=0.0;FS=70.302;HRun=1;HaplotypeScore=27.736;MQ=47.66;MQ0=0;MQRankSum=-8.676;QD=0.41;ReadPosRankSum=2.857;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:176,45:223:99:123,0,5342
9    139996615    .    ATTCC    A    90.75    QDFilter2    AB=0.936;AC=1;AF=0.50;AN=2;BaseQRankSum=5.969;DP=227;DS;FS=28.643;HRun=0;HaplotypeScore=2778.5274;IndelType=D;MQ=46.85;MQ0=0;MQRankSum=-4.806;QD=0.39;ReadPosRankSum=0.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:218,16:227:99:130,0,13463
9    139996618    .    CCT    C    35.01    QDFilter2    AB=0.931;AC=1;AF=0.50;AN=2;BaseQRankSum=7.674;DP=221;DS;FS=44.147;HRun=0;HaplotypeScore=2269.101;IndelType=D;MQ=47.36;MQ0=0;MQRankSum=-5.958;QD=0.15;ReadPosRankSum=-0.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:211,17:221:74.04:74,0,9440
9    139996641    rs13298199    C    A    1587.98    HaplotypeScoreFilter13    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=1.814;DB;DP=211;DS;Dels=0.0;FS=13.43;HRun=0;HaplotypeScore=47.421;MQ=46.04;MQ0=0;MQRankSum=4.873;QD=7.53;ReadPosRankSum=0.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:144,66:211:99:1618,0,3356
9    139996653    rs144166648    ACG    A    974.35    PASS    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=6.728;DB;DP=193;DS;FS=6.171;HRun=0;HaplotypeScore=1581.4329;IndelType=D;MQ=46.12;MQ0=0;MQRankSum=-3.873;QD=4.95;ReadPosRankSum=2.759;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:163,34:193:99:1013,0,8331
9    139996691    .    ACATT    A    599.18    PASS    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=6.169;DP=175;FS=58.295;HRun=0;HaplotypeScore=2368.0251;IndelType=D;MQ=39.86;MQ0=0;MQRankSum=-4.299;QD=3.24;ReadPosRankSum=-2.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:166,19:175:99:638,0,10124
9    139996710    rs62584506    A    C    764.97    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.723;DB;DP=183;Dels=0.0;FS=19.904;HRun=0;HaplotypeScore=23.2213;MQ=37.41;MQ0=0;MQRankSum=-4.659;QD=4.18;ReadPosRankSum=0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:118,64:183:99:795,0,3290
9    139996713    rs78717071    A    G    638.54    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=2.1;DB;DP=182;Dels=0.0;FS=25.862;HRun=0;HaplotypeScore=26.6356;MQ=37.94;MQ0=0;MQRankSum=-4.727;QD=3.51;ReadPosRankSum=0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:114,68:182:99:669,0,2970
9    139996714    rs73668393    T    C    671.45    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DB;DP=181;Dels=0.0;FS=14.682;HRun=0;HaplotypeScore=26.6356;MQ=37.94;MQ0=0;MQRankSum=-4.195;QD=3.71;ReadPosRankSum=-0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:107,73:181:99:701,0,2891
9    139996739    .    A    ACG    4250.02    PASS    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=1.365;DP=212;FS=30.025;HRun=0;HaplotypeScore=3156.4467;IndelType=I;MQ=36.48;MQ0=1;MQRankSum=-4.454;QD=18.97;ReadPosRankSum=-1.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:150,68:212:99:4250,0,3860
9    139996749    rs11145991    G    A    774.24    HaplotypeScoreFilter13;MQFilter40    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.402;DB;DP=221;Dels=0.0;FS=12.022;HRun=0;HaplotypeScore=117.3106;MQ=36.02;MQ0=1;MQRankSum=-1.481;QD=3.5;ReadPosRankSum=-1.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:167,52:221:99:804,0,3967
9    139996764    rs62584544    G    C    433.56    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=0.672;DB;DP=229;Dels=0.0;FS=24.263;HRun=0;HaplotypeScore=132.1198;MQ=39.44;MQ0=1;MQRankSum=-2.162;QD=1.89;ReadPosRankSum=-2.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:195,34:229:99:464,0,4725
9    139996768    .    T    TAC    1226.19    PASS    AB=0.897;AC=1;AF=0.50;AN=2;BaseQRankSum=7.538;DP=236;FS=16.243;HRun=0;HaplotypeScore=3256.7943;IndelType=I;MQ=40.9;MQ0=1;MQRankSum=-4.425;QD=5.05;ReadPosRankSum=1.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:200,28:236:99:1265,0,5718
9    139996778    rs11145992    C    T    286.77    HaplotypeScoreFilter13;QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=3.768;DB;DP=235;Dels=0.02;FS=13.75;HRun=0;HaplotypeScore=183.3336;MQ=40.82;MQ0=1;MQRankSum=-3.451;QD=1.2;ReadPosRankSum=-1.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:198,37:235:99:317,0,5203
9    139996838    rs62584546    A    G    87.74    HaplotypeScoreFilter13;QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.756;DB;DP=222;DS;Dels=0.0;FS=6.752;HRun=1;HaplotypeScore=49.6969;MQ=49.04;MQ0=1;MQRankSum=-5.165;QD=0.4;ReadPosRankSum=-2.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:190,32:222:99:118,0,5328
9    139996873    rs62584547    T    C    104.25    HaplotypeScoreFilter13;QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.112;DB;DP=219;DS;Dels=0.0;FS=6.841;HRun=0;HaplotypeScore=38.7704;MQ=51.44;MQ0=1;MQRankSum=-6.866;QD=0.48;ReadPosRankSum=1.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:186,33:219:99:134,0,5507
9    139996953    .    C    CGGT    584.86    PASS    AB=0.917;AC=1;AF=0.50;AN=2;BaseQRankSum=7.087;DP=205;FS=23.047;HRun=0;HaplotypeScore=1893.6116;IndelType=I;MQ=55.34;MQ0=1;MQRankSum=-6.709;QD=2.8;ReadPosRankSum=-0.687;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:190,19:205:99:624,0,8694
9    139997025    rs77424978    T    C    487.96    HaplotypeScoreFilter13    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.224;DB;DP=231;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=84.2753;MQ=52.13;MQ0=2;MQRankSum=-9.915;QD=2.11;ReadPosRankSum=2.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:157,54:231:99:518,0,5043
9    139997039    .    C    G    58.96    HaplotypeScoreFilter13;QDFilter2    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.043;DP=218;Dels=0.02;FS=30.041;HRun=1;HaplotypeScore=72.7136;MQ=52.54;MQ0=2;MQRankSum=-9.631;QD=0.27;ReadPosRankSum=-0.145;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:173,45:218:88.96:89,0,5255
9    139997061    .    A    G    637.48    HaplotypeScoreFilter13    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.12;DP=220;Dels=0.0;FS=34.636;HRun=1;HaplotypeScore=44.2928;MQ=54.08;MQ0=2;MQRankSum=-9.399;QD=2.9;ReadPosRankSum=1.149;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:167,53:220:99:667,0,5422
9    139997157    .    C    G    112.44    HaplotypeScoreFilter13;QDFilter2    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.233;DP=230;Dels=0.03;FS=2.98;HRun=1;HaplotypeScore=31.816;MQ=55.12;MQ0=5;MQRankSum=-5.045;QD=0.48;ReadPosRankSum=-2.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:197,32:230:99:142,0,6062
9    139997209    rs112103306    C    A    648.57    HaplotypeScoreFilter13    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.415;DB;DP=248;DS;Dels=0.0;FS=0.673;HRun=1;HaplotypeScore=33.7127;MQ=52.01;MQ0=4;MQRankSum=-4.766;QD=2.62;ReadPosRankSum=4.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:196,52:248:99:679,0,5840
9    139997213    rs66976915    C    CTG    422.07    QDFilter2    AB=0.939;AC=1;AF=0.50;AN=2;BaseQRankSum=6.395;DB;DP=240;DS;FS=3.259;HRun=0;HaplotypeScore=1706.6381;IndelType=I;MQ=51.75;MQ0=4;MQRankSum=-5.438;QD=1.7;ReadPosRankSum=-2.262;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:232,15:240:99:461,0,8625
9    139997251    .    T    C    438.79    HaplotypeScoreFilter13;QDFilter2    AB=0.845;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.432;DP=246;DS;Dels=0.0;FS=5.738;HRun=0;HaplotypeScore=31.8236;MQ=51.03;MQ0=5;MQRankSum=-3.287;QD=1.78;ReadPosRankSum=-1.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:207,38:246:99:469,0,5928
9    139997294    rs62584555    A    G    918.83    HaplotypeScoreFilter13    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=1.869;DB;DP=240;DS;Dels=0.0;FS=4.027;HRun=0;HaplotypeScore=62.4507;MQ=52.0;MQ0=8;MQRankSum=-7.952;QD=3.83;ReadPosRankSum=1.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:161,78:240:99:949,0,4723
9    139997353    rs113977903    A    G    692.49    HaplotypeScoreFilter13    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.902;DB;DP=225;DS;Dels=0.03;FS=32.509;HRun=1;HaplotypeScore=188.4723;MQ=53.39;MQ0=5;MQRankSum=-7.451;QD=2.98;ReadPosRankSum=3.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:169,55:225:99:722,0,5156
9    139997361    rs67010467    TAC    T    2300.82    PASS    AB=0.749;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=223;DS;FS=0.0;HRun=0;HaplotypeScore=2206.9239;IndelType=D;MQ=53.68;MQ0=3;MQRankSum=4.586;QD=10.14;ReadPosRankSum=1.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:151,76:223:99:2340,0,6442
9    139997373    .    C    T    200.56    HaplotypeScoreFilter13;QDFilter2    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=3.974;DP=235;DS;Dels=0.01;FS=44.545;HRun=0;HaplotypeScore=91.218;MQ=54.28;MQ0=2;MQRankSum=-4.319;QD=0.85;ReadPosRankSum=-0.907;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:206,29:235:99:231,0,5741
9    139997386    rs62584557    A    G    3608.36    HaplotypeScoreFilter13    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.126;DB;DP=243;DS;Dels=0.0;FS=14.196;HRun=0;HaplotypeScore=20.3974;MQ=54.32;MQ0=2;MQRankSum=-0.539;QD=14.85;ReadPosRankSum=1.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:107,136:243:99:3608,0,3097
9    139997454    .    A    G    194.47    HaplotypeScoreFilter13;QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=2.045;DP=250;DS;Dels=0.0;FS=17.55;HRun=0;HaplotypeScore=31.2677;MQ=55.15;MQ0=1;MQRankSum=-8.268;QD=0.78;ReadPosRankSum=-2.488;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:208,42:250:99:224,0,6294
9    139997563    .    A    ACATT    155.34    QDFilter2    AB=0.942;AC=1;AF=0.50;AN=2;BaseQRankSum=6.599;DP=234;DS;FS=1.198;HRun=0;HaplotypeScore=1542.6265;IndelType=I;MQ=54.79;MQ0=5;MQRankSum=-6.526;QD=0.63;ReadPosRankSum=-0.944;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:230,10:234:99:194,0,10227
9    139997596    .    T    TACAG    362.68    QDFilter2    AB=0.961;AC=1;AF=0.50;AN=2;BaseQRankSum=6.527;DP=240;DS;FS=4.012;HRun=0;HaplotypeScore=1699.2412;IndelType=I;MQ=54.69;MQ0=4;MQRankSum=-5.04;QD=1.46;ReadPosRankSum=3.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:238,7:240:99:402,0,10781
9    139997720    .    T    TTCAC    232.20    QDFilter2    AB=0.962;AC=1;AF=0.50;AN=2;BaseQRankSum=5.758;DP=228;DS;FS=5.534;HRun=0;HaplotypeScore=1396.833;IndelType=I;MQ=57.87;MQ0=0;MQRankSum=-5.777;QD=1.01;ReadPosRankSum=-0.806;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:220,8:228:99:271,0,11890
9    139997909    rs113861954    C    CATT    449.43    PASS    AB=0.941;AC=1;AF=0.50;AN=2;BaseQRankSum=6.826;DB;DP=218;DS;FS=44.216;HRun=0;HaplotypeScore=1209.0138;IndelType=I;MQ=56.97;MQ0=1;MQRankSum=-6.831;QD=2.01;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:210,13:218:99:488,0,9403
9    139997934    rs79755107    A    G    217.74    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.216;DB;DP=235;Dels=0.0;FS=24.146;HRun=1;HaplotypeScore=1.9979;MQ=56.46;MQ0=0;MQRankSum=-7.664;QD=0.93;ReadPosRankSum=-3.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:201,34:235:99:248,0,6497
9    139997955    rs77255238    A    G    613.81    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=4.158;DB;DP=250;DS;Dels=0.0;FS=4.673;HRun=0;HaplotypeScore=1.7287;MQ=55.43;MQ0=2;MQRankSum=-9.916;QD=2.46;ReadPosRankSum=0.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:200,50:250:99:644,0,6068
9    139997971    rs62585860    C    T    661.32    HaplotypeScoreFilter13    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.836;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.6657;MQ=54.68;MQ0=3;MQRankSum=-9.872;QD=2.65;ReadPosRankSum=2.793;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:192,58:250:99:691,0,5838
9    139997973    .    G    A    508.98    PASS    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=2.658;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.6678;MQ=54.32;MQ0=3;MQRankSum=-8.456;QD=2.04;ReadPosRankSum=3.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:203,47:250:99:539,0,5724
9    139998026    rs62585861    C    G    454.66    HaplotypeScoreFilter13    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=0.541;DB;DP=218;DS;Dels=0.0;FS=18.827;HRun=0;HaplotypeScore=17.8535;MQ=51.91;MQ0=3;MQRankSum=-7.127;QD=2.08;ReadPosRankSum=1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:177,40:218:99:485,0,5164
9    139998042    rs28373932    C    T    2062.62    HaplotypeScoreFilter13    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=202;DS;Dels=0.0;FS=7.621;HRun=0;HaplotypeScore=45.1734;MQ=53.51;MQ0=2;MQRankSum=4.636;QD=10.21;ReadPosRankSum=-1.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:124,78:202:99:2093,0,2884
9    139998043    .    G    A    55.66    HaplotypeScoreFilter13;QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=3.052;DP=203;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=46.0401;MQ=53.54;MQ0=2;MQRankSum=-6.623;QD=0.27;ReadPosRankSum=3.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371587    GT:AD:DP:GQ:PL    0/1:176,26:203:85.65:86,0,5048
9    140002220    rs10117795    A    G    311.99    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.639;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.274;QD=22.28;ReadPosRankSum=-0.639;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371579    GT:AD:DP:GQ:PL    0/1:2,12:14:42.92:342,0,43
9    140002989    rs4880091    T    C    1616.97    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.086;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-1.128;QD=12.63;ReadPosRankSum=-0.689;SNPEFF_AMINO_ACID_CHANGE=D385;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140002840_140003633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN1B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000474902    GT:AD:DP:GQ:PL    0/1:66,62:128:99:1647,0,1891
9    140004959    rs6420281    C    T    59.06    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.56;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371579    GT:AD:DP:GQ:PL    0/1:6,3:9:89.06:89,0,211
9    140005357    .    C    G    74.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=6.22;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G440R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140005332_140005402;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371579    GT:AD:DP:GQ:PL    0/1:6,6:12:99:105,0,151
9    140006202    rs13631    G    A    570.92    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=38;Dels=0.0;FS=7.265;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.251;QD=15.02;ReadPosRankSum=0.783;SNPEFF_AMINO_ACID_CHANGE=L404;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140006142_140006206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371579    GT:AD:DP:GQ:PL    0/1:16,22:38:99:601,0,477
9    140006425    rs10747048    C    G    148.21    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=17;Dels=0.0;FS=4.752;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=8.72;ReadPosRankSum=-1.107;SNPEFF_AMINO_ACID_CHANGE=P369;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140006325_140006481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371579    GT:AD:DP:GQ:PL    0/1:8,9:17:99:178,0,227
9    140040156    rs10870196    G    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=14.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315048    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
9    140055876    rs10747050    G    A    251.40    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=17;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=0.8321;MQ=58.63;MQ0=0;MQRankSum=0.754;QD=14.79;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485413    GT:AD:DP:GQ:PL    0/1:6,11:17:99:281,0,153
9    140064315    rs7019671    C    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_AMINO_ACID_CHANGE=Q27H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140063723_140064503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371542    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
9    140064376    rs77712801    G    A    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_AMINO_ACID_CHANGE=S7L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140063723_140064503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371542    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
9    140074578    rs55642373    C    T    242.72    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=16;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.705;QD=15.17;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471131    GT:AD:DP:GQ:PL    0/1:6,10:16:99:273,0,172
9    140075181    rs73571568    G    C    116.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.74;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471131    GT:AD:DP:GQ:PL    0/1:9,6:15:99:146,0,258
9    140076358    rs28369482    G    A    50.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=6.29;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323927    GT:AD:DP:GQ:PL    0/1:5,3:8:80.28:80,0,137
9    140077639    rs11549105    G    A    1100.74    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.917;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8326;MQ=59.42;MQ0=0;MQRankSum=0.331;QD=13.93;ReadPosRankSum=-0.656;SNPEFF_AMINO_ACID_CHANGE=R408;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140077577_140077694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323927    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1131,0,915
9    140077729    rs28490558    G    A    479.77    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.998;DB;DP=58;Dels=0.0;FS=1.118;HRun=0;HaplotypeScore=0.8321;MQ=59.6;MQ0=0;MQRankSum=-0.105;QD=8.27;ReadPosRankSum=-0.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323927    GT:AD:DP:GQ:PL    0/1:34,24:58:99:510,0,968
9    140079522    rs11549106    G    A    40.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=V297;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140079365_140079539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323927    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:71,0,23
9    140080583    rs3922735    G    A    267.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.289;QD=22.29;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323927    GT:AD:DP:GQ:PL    0/1:4,8:12:79.46:297,0,79
9    140083320    rs11556579    G    C    47.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=9.6;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321773    GT:AD:DP:GQ:PL    0/1:2,3:5:32.20:78,0,32
9    140084376    rs11556580    G    A    277.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=13.21;ReadPosRankSum=-1.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463511    GT:AD:DP:GQ:PL    0/1:12,9:21:99:307,0,317
9    140084485    rs3087779    G    A    78.59    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.65;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463511    GT:AD:DP:GQ:PL    0/1:1,3:4:22.31:109,0,22
9    140100224    rs7032361    A    G    680.12    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.425;DB;DP=51;Dels=0.0;FS=7.92;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.349;QD=13.34;ReadPosRankSum=0.009;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM203;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343666    GT:AD:DP:GQ:PL    0/1:27,24:51:99:710,0,776
9    140108915    rs33936655    CTG    C    770.82    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=3.575;DB;DP=40;FS=2.919;HRun=0;HaplotypeScore=128.9207;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.108;QD=19.27;ReadPosRankSum=1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344894    GT:AD:DP:GQ:PL    0/1:21,19:40:99:810,0,1144
9    140110274    rs7390663    T    C    298.81    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=0.819;DB;DP=40;Dels=0.0;FS=5.172;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.492;QD=7.47;ReadPosRankSum=-1.147;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF208;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391553    GT:AD:DP:GQ:PL    0/1:27,13:40:99:329,0,913
9    140110555    rs62587579    G    A    626.09    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.593;DB;DP=37;Dels=0.0;FS=5.824;HRun=3;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.479;QD=16.92;ReadPosRankSum=1.16;SNPEFF_AMINO_ACID_CHANGE=V488I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140110546_140110618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDOR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427047    GT:AD:DP:GQ:PL    0/1:15,22:37:99:656,0,443
9    140120396    rs6606566    C    T    139.87    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.932;QD=12.72;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=A108V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140120066_140120762;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf169;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359069    GT:AD:DP:GQ:PL    0/1:5,6:11:99:170,0,159
9    140126798    rs112848350    A    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF224;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445101    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
9    140128085    rs28407527    T    C    865.06    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=66;Dels=0.0;FS=0.988;HRun=0;HaplotypeScore=0.7887;MQ=58.59;MQ0=0;MQRankSum=-0.678;QD=13.11;ReadPosRankSum=-0.812;SNPEFF_AMINO_ACID_CHANGE=L253;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140128085_140128174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361134    GT:AD:DP:GQ:PL    0/1:32,34:66:99:895,0,947
9    140128577    rs34664302    G    C    77.49    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.5;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=A314;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140128561_140128728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361134    GT:AD:DP:GQ:PL    0/1:1,4:5:21.40:107,0,21
9    140128644    rs35699762    G    A    36.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.31;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=G337S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140128561_140128728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361134    GT:AD:DP:GQ:PL    0/1:3,2:5:66.52:67,0,87
9    140128909    .    G    A    172.56    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=45.98;MQ0=0;MQRankSum=0.0;QD=13.27;ReadPosRankSum=1.663;SNPEFF_AMINO_ACID_CHANGE=V379I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140128868_140128984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361134    GT:AD:DP:GQ:PL    0/1:6,7:13:99:203,0,109
9    140129323    rs77377925    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361134    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
9    140129450    rs80295920    C    G    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361134    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
9    140130261    rs28434439    T    C    131.63    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.63;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361134    GT:AD:DP:GQ:PL    0/1:4,5:9:99:162,0,136
9    140130606    rs28542318    A    T    531.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=29.51;SNPEFF_AMINO_ACID_CHANGE=E513V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140130404_140131006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC34A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361134    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:564,42,0
9    140138787    rs9697206    A    C    281.78    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=21;Dels=0.0;FS=1.971;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.176;QD=13.42;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM166A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388932    GT:AD:DP:GQ:PL    0/1:10,11:21:99:312,0,345
9    140139184    rs4073074    A    G    314.48    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.2;MQ0=0;MQRankSum=0.441;QD=10.84;ReadPosRankSum=-2.019;SNPEFF_AMINO_ACID_CHANGE=Y219;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140139094_140139188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM166A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344774    GT:AD:DP:GQ:PL    0/1:16,13:29:99:344,0,418
9    140139757    rs9775264    G    A    329.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.2;MQ0=0;MQRankSum=1.448;QD=25.31;ReadPosRankSum=-0.29;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FAM166A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000344774    GT:AD:DP:GQ:PL    1/1:1,12:13:11.39:361,11,0
9    140142299    rs9330201    C    T    168.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340384    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:201,15,0
9    140145505    rs9695304    C    G    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388931    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
9    140146651    rs28567631    T    C    577.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388931    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:610,48,0
9    140147094    rs71387813    C    CCT    240.01    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=51.0566;IndelType=I;MQ=57.05;MQ0=0;MQRankSum=-1.92;QD=30.0;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388931    GT:AD:DP:GQ:PL    0/1:3,5:8:99:279,0,123
9    140147487    rs149372405    G    C    131.75    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=14.64;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388931    GT:AD:DP:GQ:PL    0/1:4,5:9:99:162,0,131
9    140148051    rs28631372    A    G    77.85    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=5.56;ReadPosRankSum=-1.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf173;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388931    GT:AD:DP:GQ:PL    0/1:9,5:14:99:108,0,338
9    140157429    rs13294457    G    A    178.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=17.87;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    0/1:4,6:10:99:209,0,108
9    140157460    rs13296455    T    C    256.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:289,24,0
9    140157701    rs56368095    C    T    93.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.17;MQ0=0;MQRankSum=0.361;QD=9.37;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    0/1:5,5:10:99:124,0,116
9    140158871    rs13295537    T    C    30.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
9    140161334    rs9330192    C    T    188.54    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.597;QD=14.5;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    0/1:5,8:13:99:219,0,113
9    140161634    .    GGGGCT    G    317.69    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=3.566;DP=21;FS=2.831;HRun=0;HaplotypeScore=194.871;IndelType=D;MQ=52.37;MQ0=0;MQRankSum=-2.615;QD=15.13;ReadPosRankSum=1.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    0/1:16,5:21:99:357,0,837
9    140161641    rs33923321    AGGTGGG    A    363.64    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.618;DB;DP=21;FS=2.73;HRun=0;HaplotypeScore=199.4571;IndelType=D;MQ=52.37;MQ0=0;MQRankSum=-2.275;QD=17.32;ReadPosRankSum=2.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    0/1:15,5:21:99:403,0,938
9    140166645    rs61750948    C    T    626.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.11;DB;DP=46;Dels=0.0;FS=1.154;HRun=2;HaplotypeScore=0.8941;MQ=59.5;MQ0=0;MQRankSum=0.791;QD=13.61;ReadPosRankSum=-1.186;SNPEFF_AMINO_ACID_CHANGE=F486;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140166533_140166674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    0/1:23,23:46:99:656,0,696
9    140167022    rs3204123    G    A    326.75    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.004;QD=21.78;ReadPosRankSum=0.639;SNPEFF_AMINO_ACID_CHANGE=P517;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140166959_140167067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COBRA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343053    GT:AD:DP:GQ:PL    0/1:3,12:15:32.42:357,0,32
9    140203945    rs75592854    C    T    63.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=15.99;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    0/1:1,3:4:21.41:94,0,21
9    140218025    rs73668241    C    T    131.32    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.74;MQ0=0;MQRankSum=-1.034;QD=11.94;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    0/1:4,7:11:99:161,0,139
9    140243844    rs28545754    C    T    157.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.2;SNPEFF_AMINO_ACID_CHANGE=C225Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140243821_140243983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342129    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
9    140246050    rs11534416    T    G    325.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472958    GT:AD:DP:GQ:PL    1/1:0,10:10:30.05:359,30,0
9    140247143    rs7020732    T    G    112.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_AMINO_ACID_CHANGE=E2D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140247072_140247238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342129    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
9    140250633    rs13293922    G    A    37.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
9    140250818    rs7389423    C    T    670.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=R220Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140250720_140250820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:703,51,0
9    140262218    rs11533157    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
9    140262426    rs11533158    C    T    1284.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7591;MQ=58.81;MQ0=0;QD=32.94;SNPEFF_AMINO_ACID_CHANGE=A160T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140262388_140262441;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,39:39:96.32:1318,96,0
9    140267650    rs28688091    T    C    316.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:349,27,0
9    140268129    rs66959515    GTTT    G    198.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=6;HaplotypeScore=29.8371;IndelType=D;MQ=56.04;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:240,15,0
9    140268183    rs6606585    T    C    31.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
9    140277826    rs13291830    C    T    83.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.95;SNPEFF_AMINO_ACID_CHANGE=R20Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140277765_140277829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
9    140287059    rs17855944    T    C    314.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:347,27,0
9    140289696    rs9695232    A    C    836.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EXD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340951    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:870,66,0
9    140320617    rs9414734    C    T    202.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.71;MQ0=0;MQRankSum=1.684;QD=11.24;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341349    GT:AD:DP:GQ:PL    0/1:9,9:18:99:232,0,238
9    140320792    rs72765154    G    C    159.87    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.358;QD=6.15;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341349    GT:AD:DP:GQ:PL    0/1:15,11:26:99:190,0,484
9    140325898    rs7467896    G    A    118.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344119    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
9    140325962    rs11534415    G    A    34.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.61;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344119    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:65,0,23
9    140329618    rs28589413    A    G    132.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=58.75;MQ0=0;MQRankSum=0.648;QD=8.81;ReadPosRankSum=0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493135    GT:AD:DP:GQ:PL    0/1:9,6:15:99:162,0,297
9    140329997    rs28558849    G    A    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493135    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:73,0,30
9    140330976    rs13297080    T    C    189.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.01;SNPEFF_AMINO_ACID_CHANGE=V261;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140330973_140331203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344119    GT:AD:DP:GQ:PL    1/1:0,6:7:18.04:222,18,0
9    140331075    .    G    A    112.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.103;QD=11.24;ReadPosRankSum=-0.336;SNPEFF_AMINO_ACID_CHANGE=R203*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_9_140331014_140331203;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000493135    GT:AD:DP:GQ:PL    0/1:5,5:10:99:142,0,174
9    140331833    rs9414731    A    G    416.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341349    GT:AD:DP:GQ:PL    1/1:0,14:14:36.08:450,36,0
9    140332478    rs6606582    A    G    625.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=L49P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140332419_140332536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000493135    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:659,51,0
9    140344328    rs28699612    G    A    443.28    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=4.123;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7335;MQ=60.0;MQ0=0;MQRankSum=-1.242;QD=12.67;ReadPosRankSum=-1.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371468    GT:AD:DP:GQ:PL    0/1:19,16:35:99:473,0,524
9    140349874    rs28585539    C    G    73.25    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=10.46;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277531    GT:AD:DP:GQ:PL    0/1:3,4:7:87.41:103,0,87
9    140356374    rs4962240    C    A    109.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487228    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:142,12,0
9    140357972    rs1891627    A    G    205.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_AMINO_ACID_CHANGE=W1046R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140357867_140357983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434090    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
9    140374861    rs1891630    A    G    1257.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=V211A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140374764_140374932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371446    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1291,96,0
9    140392616    rs61754920    G    A    428.85    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.881;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=12.25;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=I194;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140392566_140392697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371457    GT:AD:DP:GQ:PL    0/1:16,19:35:99:459,0,413
9    140399983    rs7037200    T    C    198.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371450    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
9    140400275    rs3750381    T    C    1106.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.81;MQ0=0;MQRankSum=-1.003;QD=28.38;ReadPosRankSum=0.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371450    GT:AD:DP:GQ:PL    1/1:1,38:39:67.62:1140,68,0
9    140409842    rs140581167    G    A    33.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.71;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=S112L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140409831_140409974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371446    GT:AD:DP:GQ:PL    0/1:3,2:5:59.42:64,0,59
9    140414410    rs11137410    C    T    1486.31    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.468;DB;DP=84;Dels=0.0;FS=7.303;HRun=0;HaplotypeScore=1.7465;MQ=60.0;MQ0=0;MQRankSum=-0.468;QD=17.69;ReadPosRankSum=0.773;SNPEFF_AMINO_ACID_CHANGE=R314Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140414369_140414495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434090    GT:AD:DP:GQ:PL    0/1:35,49:84:99:1516,0,1023
9    140416025    rs2298172    A    G    124.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.103;QD=12.4;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491019    GT:AD:DP:GQ:PL    0/1:5,5:10:99:154,0,133
9    140416035    .    C    T    93.90    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.312;QD=7.22;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491019    GT:AD:DP:GQ:PL    0/1:7,6:13:99:124,0,208
9    140441177    rs2254149    A    G    141.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.384;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.265;QD=7.87;ReadPosRankSum=-1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277531    GT:AD:DP:GQ:PL    0/1:9,9:18:99:172,0,320
9    140449582    rs10110    A    C    129.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371443    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
9    140450159    rs1105221    C    T    166.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=16.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371443    GT:AD:DP:GQ:PL    0/1:4,6:10:99:196,0,134
9    140477249    rs2094623    G    A    31.35    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.48;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471957    GT:AD:DP:GQ:PL    0/1:5,2:7:61.34:61,0,188
9    140477812    rs1891628    G    A    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471957    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
9    140483076    rs2259657    G    A    376.92    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=3.46;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.143;QD=10.19;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298585    GT:AD:DP:GQ:PL    0/1:23,14:37:99:407,0,656
9    140507308    rs2282020    C    T    72.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=8.02;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371417    GT:AD:DP:GQ:PL    0/1:6,3:9:99:102,0,190
9    140510219    rs45627631    C    A    161.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-1.753;QD=7.71;ReadPosRankSum=-0.037;SNPEFF_AMINO_ACID_CHANGE=V145F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140509784_140510651;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C9orf37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371417    GT:AD:DP:GQ:PL    0/1:14,7:21:99:192,0,494
9    140611436    rs3812497    T    C    808.52    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=67;Dels=0.0;FS=2.355;HRun=2;HaplotypeScore=1.5782;MQ=59.66;MQ0=0;MQRankSum=-0.099;QD=12.07;ReadPosRankSum=-0.086;SNPEFF_AMINO_ACID_CHANGE=P117;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140611078_140611634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    0/1:35,32:67:99:839,0,1105
9    140623027    rs3125782    C    T    880.08    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=5.075;DB;DP=54;Dels=0.0;FS=1.621;HRun=3;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.064;QD=16.3;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    0/1:25,29:54:99:910,0,538
9    140638416    rs1129767    G    A    61.09    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.909;DB;DP=14;Dels=0.0;FS=2.757;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=4.36;ReadPosRankSum=-1.061;SNPEFF_AMINO_ACID_CHANGE=S317;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140638354_140638542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    0/1:10,4:14:91.08:91,0,261
9    140638461    rs1129768    T    C    672.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=G332;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140638354_140638542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:706,57,0
9    140638607    rs4979643    A    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495657    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
9    140652476    rs3125794    G    T    487.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.649;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.36;MQ0=0;MQRankSum=-0.744;QD=13.55;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    0/1:18,18:36:99:518,0,525
9    140652537    rs3125795    G    T    228.94    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.847;DB;DP=16;Dels=0.0;FS=3.233;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.694;QD=14.31;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    0/1:7,9:16:99:259,0,247
9    140652571    rs3123518    C    G    61.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.098;QD=6.12;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    0/1:5,5:10:91.18:91,0,127
9    140656980    rs4876941    A    G    57.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.61;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    0/1:3,3:6:87.63:88,0,107
9    140669869    rs72766952    C    A    155.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334856    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
9    140679695    rs13283365    G    C    193.92    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5678;MQ=60.0;MQ0=0;MQRankSum=-0.144;QD=10.77;ReadPosRankSum=-0.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462484    GT:AD:DP:GQ:PL    0/1:8,9:18:99:224,0,191
9    140693181    rs4876947    G    A    392.96    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.302;DB;DP=24;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=16.37;ReadPosRankSum=2.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371400    GT:AD:DP:GQ:PL    0/1:11,13:24:99:423,0,245
9    140705739    rs117162135    C    T    128.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=18.43;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371400    GT:AD:DP:GQ:PL    0/1:2,5:7:64.59:159,0,65
9    140710241    rs184770482    A    T    97.20    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=13.89;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483653    GT:AD:DP:GQ:PL    0/1:3,4:7:99:127,0,102
9    140729243    rs141797498    C    T    323.85    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=33;Dels=0.0;FS=3.39;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.381;QD=9.81;ReadPosRankSum=-1.189;SNPEFF_AMINO_ACID_CHANGE=R1245;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140729225_140730576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000460843    GT:AD:DP:GQ:PL    0/1:19,14:33:99:354,0,540
9    140773362    rs11137291    T    G    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL772363.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371390    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
9    140777299    rs71238527    G    T    364.10    HaplotypeScoreFilter13    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.822;DB;DP=153;Dels=0.0;FS=0.823;HRun=0;HaplotypeScore=24.9837;MQ=56.96;MQ0=0;MQRankSum=0.928;QD=2.36;ReadPosRankSum=-0.56;SNPEFF_AMINO_ACID_CHANGE=G165V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140777196_140777335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277551    GT:AD:DP:GQ:PL    0/1:128,25:153:99:394,0,3949
9    140777306    rs4422842    C    G    1445.27    HaplotypeScoreFilter13    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=6.061;DB;DP=155;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=22.9841;MQ=56.98;MQ0=0;MQRankSum=-3.41;QD=9.32;ReadPosRankSum=-0.701;SNPEFF_AMINO_ACID_CHANGE=N167K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_140777196_140777335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277551    GT:AD:DP:GQ:PL    0/1:94,61:155:99:1475,0,2540
9    140777370    rs1110146    A    C    1026.21    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.062;DB;DP=102;Dels=0.0;FS=3.607;HRun=0;HaplotypeScore=1.8136;MQ=57.14;MQ0=0;MQRankSum=-2.249;QD=10.06;ReadPosRankSum=0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277549    GT:AD:DP:GQ:PL    0/1:58,44:102:99:1056,0,1931
9    140777432    rs7863142    C    T    456.37    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=3.053;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=-0.059;QD=12.01;ReadPosRankSum=0.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277549    GT:AD:DP:GQ:PL    0/1:21,17:38:99:486,0,731
9    140777524    rs6559245    G    A    61.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=8.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL772363.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371390    GT:AD:DP:GQ:PL    0/1:4,3:7:91.69:92,0,144
9    140851215    rs181095015    C    T    448.17    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.476;DB;DP=40;Dels=0.0;FS=9.36;HRun=0;HaplotypeScore=0.8321;MQ=58.36;MQ0=0;MQRankSum=-1.101;QD=11.2;ReadPosRankSum=-0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277549    GT:AD:DP:GQ:PL    0/1:22,18:40:99:478,0,603
9    140938183    rs3750506    A    G    688.85    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.592;DB;DP=61;Dels=0.0;FS=13.243;HRun=0;HaplotypeScore=0.9983;MQ=59.62;MQ0=0;MQRankSum=0.636;QD=11.29;ReadPosRankSum=-0.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277549    GT:AD:DP:GQ:PL    0/1:31,30:61:99:719,0,951
9    140942057    rs1547504    A    G    163.27    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=10.2;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277549    GT:AD:DP:GQ:PL    0/1:10,6:16:99:193,0,346
9    140948197    rs4876923    G    A    684.18    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=5.35;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=57.79;MQ0=0;MQRankSum=-0.16;QD=12.91;ReadPosRankSum=0.594;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545473    GT:AD:DP:GQ:PL    0/1:27,26:53:99:714,0,672
9    141008876    rs2229948    C    T    3132.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=F1055;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_141008830_141008942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277549    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3165,241,0
9    141009015    rs4876928    C    T    356.94    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=4.035;DB;DP=32;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.9867;MQ=59.28;MQ0=0;MQRankSum=-0.264;QD=11.15;ReadPosRankSum=-0.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371365    GT:AD:DP:GQ:PL    0/1:20,12:32:99:387,0,558
9    141015351    rs2278972    A    G    39.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.421;QD=4.42;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277549    GT:AD:DP:GQ:PL    0/1:5,4:9:69.74:70,0,97
9    141016262    rs2278973    T    G    607.08    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=59;Dels=0.0;FS=3.794;HRun=0;HaplotypeScore=1.7323;MQ=59.29;MQ0=0;MQRankSum=1.216;QD=10.29;ReadPosRankSum=2.265;SNPEFF_AMINO_ACID_CHANGE=L2215R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_9_141016108_141016631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277551    GT:AD:DP:GQ:PL    0/1:33,26:59:99:637,0,1035
9    141016531    rs2229949    C    T    279.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277549    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
9    141069420    rs11137400    G    A    235.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.73;MQ0=0;QD=29.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:269,24,0
9    141069424    rs11137401    C    G    231.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=35.0;MQ0=0;QD=23.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,10:10:24.04:264,24,0
9    141069452    rs9410181    T    C    235.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=32.84;MQ0=0;QD=23.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,10:10:24.04:269,24,0
9    141069460    rs9410182    G    A    204.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.84;MQ0=0;QD=20.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,10:10:21.03:237,21,0
9    141069463    rs9410183    C    T    256.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.16;MQ0=0;QD=23.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,11:11:27.04:289,27,0
9    141069473    rs9410184    C    T    281.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.8;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,10:10:27.05:315,27,0
9    141069521    rs13297914    T    C    177.81    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.82;MQ0=0;MQRankSum=-0.278;QD=16.16;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    0/1:4,7:11:99:208,0,108
9    141069563    rs13292888    A    G    226.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=31.89;MQ0=0;QD=25.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:259,21,0
9    141069613    rs13292919    A    G    152.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.43;MQ0=0;QD=25.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:185,15,0
9    141069905    rs71485051    C    T    178.76    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.53;MQ0=0;MQRankSum=1.666;QD=19.86;ReadPosRankSum=1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    0/1:2,7:9:17.51:209,0,18
9    141069927    rs71485052    C    A    147.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.33;MQ0=0;MQRankSum=1.683;QD=14.73;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    0/1:4,6:10:14.44:177,0,14
9    141069952    rs9410185    T    C    359.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.34;MQ0=0;QD=27.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:392,33,0
9    141070125    rs10867114    C    T    734.88    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.078;DB;DP=62;Dels=0.0;FS=2.302;HRun=0;HaplotypeScore=0.0;MQ=40.47;MQ0=0;MQRankSum=0.106;QD=11.85;ReadPosRankSum=-0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    0/1:28,34:62:99:765,0,689
9    141070283    rs7868693    T    C    265.67    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.396;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.26;MQ0=0;MQRankSum=1.396;QD=22.14;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    0/1:2,10:12:4.72:295,0,5
9    141070335    rs7868705    T    G    56.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.16;MQ0=0;QD=18.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:89,9,0
9    141070509    rs1814573    T    A    36.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.6;MQ0=0;QD=12.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
9    141070687    .    C    T    107.11    MQFilter40    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.71;MQ0=13;MQRankSum=0.467;QD=4.28;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    0/1:19,6:25:99:137,0,139
9    141070695    rs183702666    G    A    224.42    MQFilter40    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9545;MQ=19.2;MQ0=15;MQRankSum=0.134;QD=7.74;ReadPosRankSum=0.668;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    0/1:17,12:29:3.39:254,0,3
9    141070719    rs12353121    C    T    128.66    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.29;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.74;MQ0=22;MQRankSum=0.0;QD=3.78;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:16,18:34:15.04:161,15,0
9    141070768    rs4609262    C    T    276.45    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.752;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=16.45;MQ0=18;MQRankSum=1.376;QD=7.27;ReadPosRankSum=-1.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:13,25:38:11.40:309,11,0
9    141070824    rs9410092    T    G    233.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=23.44;MQ0=1;QD=14.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,16:16:24.07:267,24,0
9    141070831    rs78586349    C    T    234.50    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.83;MQ0=0;QD=16.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,14:14:24.07:267,24,0
9    141070837    rs77795609    C    T    167.73    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.86;MQ0=0;QD=13.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,12:12:18.05:201,18,0
9    141070840    rs28639764    C    T    134.43    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.41;MQ0=1;QD=10.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:0,13:13:15.04:167,15,0
9    141070916    rs75538873    G    A    2400.56    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=131;Dels=0.0;FS=4.624;HRun=0;HaplotypeScore=4.6088;MQ=26.02;MQ0=21;MQRankSum=2.17;QD=18.32;ReadPosRankSum=-1.617;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL591424.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408357    GT:AD:DP:GQ:PL    1/1:13,118:131:99:2434,105,0
9    141070950    rs77284214    A    G    827.99    MQFilter40    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.912;DB;DP=139;Dels=0.0;FS=1.008;HRun=0;HaplotypeScore=1.7273;MQ=25.4;MQ0=15;MQRankSum=-0.155;QD=5.96;ReadPosRankSum=-0.272;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290377    GT:AD:DP:GQ:PL    0/1:78,61:139:99:858,0,1256
9    141071019    rs9410186    A    G    608.73    MQFilter40    AB=0.093;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.576;DB;DP=108;Dels=0.0;FS=23.127;HRun=1;HaplotypeScore=0.8941;MQ=18.02;MQ0=31;MQRankSum=-3.297;QD=5.64;ReadPosRankSum=3.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503395    GT:AD:DP:GQ:PL    0/1:10,98:108:99:639,0,171
9    141071438    rs7869352    A    G    2338.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=26.29;MQ0=37;QD=15.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503395    GT:AD:DP:GQ:PL    1/1:0,151:151:99:2372,237,0
9    141071475    rs7863719    C    G    4606.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8295;MQ=42.21;MQ0=20;QD=26.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503395    GT:AD:DP:GQ:PL    1/1:0,171:172:99:4606,382,0
9    141071552    rs11137403    C    T    2471.17    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=0.444;DB;DP=197;Dels=0.0;FS=4.336;HRun=0;HaplotypeScore=3.2851;MQ=48.47;MQ0=0;MQRankSum=-3.196;QD=12.54;ReadPosRankSum=0.595;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUBBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503395    GT:AD:DP:GQ:PL    0/1:97,99:197:99:2501,0,2562
10    93603    rs6560827    C    T    1478.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.66;MQ0=12;QD=18.71;SNPEFF_AMINO_ACID_CHANGE=P171;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_92828_94054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447903    GT:AD:DP:GQ:PL    1/1:8,70:79:99:1511,141,0
10    93816    rs9329305    C    T    2194.47    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=2.369;DB;DP=197;Dels=0.0;FS=3.561;HRun=0;HaplotypeScore=2.101;MQ=46.55;MQ0=13;MQRankSum=-0.335;QD=11.08;ReadPosRankSum=-0.744;SNPEFF_AMINO_ACID_CHANGE=S100;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_92828_94054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447903    GT:AD:DP:GQ:PL    0/1:103,94:197:99:2224,0,2335
10    93945    rs4431953    G    A    3857.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7692;MQ=42.61;MQ0=17;QD=27.36;SNPEFF_AMINO_ACID_CHANGE=C129;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_92893_94054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328974    GT:AD:DP:GQ:PL    1/1:1,140:141:99:3857,313,0
10    94026    rs10904032    G    A    1173.43    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DB;DP=104;Dels=0.0;FS=3.097;HRun=0;HaplotypeScore=3.7866;MQ=40.96;MQ0=10;MQRankSum=0.115;QD=11.28;ReadPosRankSum=0.426;SNPEFF_AMINO_ACID_CHANGE=P110L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_92997_94077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309812    GT:AD:DP:GQ:PL    0/1:49,55:104:99:1203,0,1031
10    94083    rs9329309    C    T    757.80    MQFilter40    AB=0.241;AC=1;AF=0.50;AN=2;BaseQRankSum=2.194;DB;DP=58;Dels=0.0;FS=28.739;HRun=0;HaplotypeScore=0.8321;MQ=24.83;MQ0=15;MQRankSum=1.169;QD=13.07;ReadPosRankSum=-1.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272035    GT:AD:DP:GQ:PL    0/1:14,44:58:88.39:788,0,88
10    94136    rs4607995    C    T    268.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.96;MQ0=7;QD=13.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272035    GT:AD:DP:GQ:PL    1/1:0,19:20:27.04:301,27,0
10    94238    rs10904041    A    T    81.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.72;MQ0=0;QD=20.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272035    GT:AD:DP:GQ:PL    1/1:0,4:4:12:114,12,0
10    94426    rs10904045    C    T    141.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.06;MQ0=0;MQRankSum=0.361;QD=14.15;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272035    GT:AD:DP:GQ:PL    0/1:4,6:10:99:172,0,140
10    94545    rs10904047    C    T    1671.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.87;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272035    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1705,132,0
10    95096    rs11251929    A    G    218.82    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=3.09;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=19.89;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272035    GT:AD:DP:GQ:PL    0/1:3,8:11:51.12:249,0,51
10    95226    rs6560829    A    T    399.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_95122_95233;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309812    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:432,33,0
10    95229    rs6560830    C    T    382.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272035    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:415,33,0
10    95353    rs4320883    G    A    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-631M21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309812    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
10    255687    rs3063649    TTCTTTA    T    274.80    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=70.7461;IndelType=D;MQ=49.5;MQ0=0;MQRankSum=-2.793;QD=22.9;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309776    GT:AD:DP:GQ:PL    0/1:7,5:12:99:314,0,677
10    282897    rs4600135    C    T    447.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309776    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:480,36,0
10    285200    rs7919436    T    G    39.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397955    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:69,0,31
10    285479    rs10655220    G    GTGT    2177.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=183.16;IndelType=I;MQ=58.2;MQ0=0;QD=50.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397955    GT:AD:DP:GQ:PL    1/1:3,27:43:99:2220,122,0
10    287811    rs3740303    A    G    525.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397955    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:559,42,0
10    292927    rs2303990    C    A    296.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309776    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:330,24,0
10    294145    rs3132006    T    C    1341.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488275    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1375,102,0
10    294165    rs10903752    T    C    322.71    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.668;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=7.33;ReadPosRankSum=-0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488275    GT:AD:DP:GQ:PL    0/1:30,14:44:99:353,0,1026
10    294953    rs1017361    A    G    1967.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=E332;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_294843_295028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535374    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2001,153,0
10    323283    rs3740304    A    G    643.28    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.688;DB;DP=53;Dels=0.0;FS=2.371;HRun=0;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=0.686;QD=12.14;ReadPosRankSum=-2.15;SNPEFF_AMINO_ACID_CHANGE=Y1551;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_320130_323517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:27,26:53:99:673,0,873
10    329182    rs66861796    TG    T    707.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-4.378;DB;DP=52;FS=2.703;HRun=9;HaplotypeScore=314.8448;IndelType=D;MQ=59.83;MQ0=0;MQRankSum=1.931;QD=13.61;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:30,22:52:78.25:750,78,0
10    329188    rs45445697    G    T    485.79    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=-4.169;DB;DP=54;Dels=0.0;FS=4.534;HRun=0;HaplotypeScore=54.3551;MQ=60.23;MQ0=0;MQRankSum=0.882;QD=9.0;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:27,27:54:26.86:519,27,0
10    329191    .    GC    G    780.31    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=3.501;DP=53;FS=2.701;HRun=2;HaplotypeScore=309.4695;IndelType=D;MQ=60.24;MQ0=0;MQRankSum=-0.311;QD=14.72;ReadPosRankSum=0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:26,27:53:99:819,0,133
10    370977    rs3123241    A    G    824.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:858,69,0
10    371001    rs3123240    C    G    449.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:483,36,0
10    373279    rs183336091    G    A    108.84    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=12.09;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,183
10    387060    rs7904155    G    A    1300.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1333,102,0
10    394714    rs4880610    G    A    2208.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2241,169,0
10    395266    rs4880611    T    C    331.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:365,27,0
10    395463    rs4242754    G    A    240.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:274,21,0
10    395584    rs4242755    C    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
10    410825    rs10795053    G    A    562.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:596,45,0
10    412449    rs1133113    A    G    65.94    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=7.33;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:5,4:9:95.94:96,0,188
10    428503    rs4881200    A    G    456.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:490,42,0
10    435880    rs4881219    G    C    55.23    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=-1.02;QD=3.25;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:11,6:17:85.22:85,0,342
10    436547    rs11252090    G    A    187.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.2;MQ0=0;MQRankSum=0.689;QD=14.39;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:5,7:13:99:217,0,131
10    436848    rs10904093    A    G    703.09    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.68;DB;DP=61;Dels=0.0;FS=4.884;HRun=0;HaplotypeScore=3.9252;MQ=58.86;MQ0=0;MQRankSum=-1.511;QD=11.53;ReadPosRankSum=0.483;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:35,26:61:99:733,0,1058
10    444997    rs6560836    C    T    112.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-0.421;QD=12.49;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:4,5:9:99:142,0,136
10    445061    rs6560837    C    T    615.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=30.79;SNPEFF_AMINO_ACID_CHANGE=P309;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_445049_445159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381496    GT:AD:DP:GQ:PL    1/1:0,20:20:51.15:649,51,0
10    459940    rs4881274    G    A    339.06    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.339;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.523;QD=14.74;ReadPosRankSum=1.2;SNPEFF_AMINO_ACID_CHANGE=L217;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_459853_460050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381496    GT:AD:DP:GQ:PL    0/1:12,11:23:99:369,0,408
10    461912    rs145645258    TC    T    466.79    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.927;DB;DP=36;FS=0.0;HRun=5;HaplotypeScore=93.5777;IndelType=D;MQ=60.3;MQ0=0;MQRankSum=-0.207;QD=12.97;ReadPosRankSum=-0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:19,17:36:99:506,0,604
10    461989    rs11252290    C    T    30.23    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=3.78;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:5,3:8:60.22:60,0,188
10    468748    rs4881290    C    T    1352.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.77;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1386,108,0
10    518547    rs10610683    ACT    A    246.32    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=31.7289;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=24.63;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    0/1:3,7:10:32.16:285,0,32
10    530644    rs1539231    G    A    447.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280886    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:481,36,0
10    696237    rs10904535    G    A    232.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.03;SNPEFF_AMINO_ACID_CHANGE=G63R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_696017_696382;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf108;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381489    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:265,21,0
10    707782    rs3853288    T    C    41.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381489    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
10    861110    rs7910159    A    G    322.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316157    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:355,27,0
10    863482    rs35772020    G    A    222.76    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=14.85;ReadPosRankSum=-1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316157    GT:AD:DP:GQ:PL    0/1:7,8:15:99:253,0,240
10    1018585    rs4880745    T    G    1435.71    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=88;Dels=0.0;FS=0.814;HRun=1;HaplotypeScore=0.8667;MQ=59.21;MQ0=0;MQRankSum=0.96;QD=16.31;ReadPosRankSum=2.594;SNPEFF_AMINO_ACID_CHANGE=H96P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_1017097_1018933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359878.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381466    GT:AD:DP:GQ:PL    0/1:40,48:88:99:1466,0,1252
10    1042023    rs10665098    A    AAAC    878.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=38.6203;IndelType=I;MQ=49.99;MQ0=0;QD=62.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360059    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:920,42,0
10    1043058    rs1250887    T    C    2258.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360059    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2291,169,0
10    1043469    rs2242271    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360059    GT:AD:DP:GQ:PL    0/1:2,2:4:60.19:72,0,60
10    1046712    rs2306409    G    A    486.84    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=4.192;DB;DP=34;Dels=0.0;FS=6.488;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.224;QD=14.32;ReadPosRankSum=0.155;SNPEFF_AMINO_ACID_CHANGE=A134;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_1046617_1046808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538293    GT:AD:DP:GQ:PL    0/1:18,16:34:99:517,0,497
10    1060218    rs3207775    G    A    581.41    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=36;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.8667;MQ=59.36;MQ0=0;MQRankSum=0.787;QD=16.15;ReadPosRankSum=-2.537;SNPEFF_AMINO_ACID_CHANGE=R409H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_1060187_1060252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538293    GT:AD:DP:GQ:PL    0/1:15,21:36:99:611,0,384
10    1060366    .    G    A    138.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=15.44;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491635    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,141
10    1061434    rs7920953    T    C    36.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491635    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
10    1061566    rs61830961    T    C    129.86    SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=0;MQRankSum=0.742;QD=18.55;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    1/1:1,6:7:17.99:163,18,0
10    1061569    rs61830962    A    G    111.29    SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7953;MQ=44.98;MQ0=0;MQRankSum=0.742;QD=15.9;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    1/1:1,6:7:15.01:144,15,0
10    1061570    rs61830963    C    G    100.03    SnpCluster    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7953;MQ=44.98;MQ0=0;MQRankSum=0.742;QD=14.29;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    0/1:1,6:7:12.56:130,0,13
10    1061585    rs57521778    G    T    135.04    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.6547;MQ=43.31;MQ0=0;MQRankSum=0.572;QD=16.88;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    0/1:2,6:8:15.38:165,0,15
10    1061625    rs34132784    GCTGAGCA    G    416.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=297.4666;IndelType=D;MQ=38.38;MQ0=0;MQRankSum=1.044;QD=29.75;ReadPosRankSum=-0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    1/1:6,8:14:9.11:458,9,0
10    1061646    rs61830965    T    C    113.62    MQFilter40;SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.72;MQ0=0;MQRankSum=-1.214;QD=9.47;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    0/1:4,8:12:85.95:144,0,86
10    1061649    rs36172393    A    G    98.78    SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.41;MQ0=0;MQRankSum=-1.067;QD=6.59;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    0/1:5,10:15:99:129,0,125
10    1061650    rs77370508    C    G    95.77    SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=42.41;MQ0=0;MQRankSum=-1.6;QD=6.38;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    0/1:5,10:15:99:126,0,154
10    1061767    rs2306405    G    A    1010.26    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=4.073;DB;DP=67;Dels=0.0;FS=6.789;HRun=0;HaplotypeScore=1.7552;MQ=57.55;MQ0=0;MQRankSum=-0.755;QD=15.08;ReadPosRankSum=0.472;SNPEFF_AMINO_ACID_CHANGE=P445;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_1061693_1061836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538293    GT:AD:DP:GQ:PL    0/1:31,36:67:99:1040,0,701
10    1065710    rs1044261    C    T    849.83    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8255;MQ=59.63;MQ0=0;MQRankSum=-0.627;QD=16.66;ReadPosRankSum=0.01;SNPEFF_AMINO_ACID_CHANGE=W144*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_10_1064847_1065774;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    0/1:20,31:51:99:880,0,609
10    1065912    rs7918994    G    A    168.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360803    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
10    1066710    rs34407608    C    T    348.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.884;QD=11.61;ReadPosRankSum=-0.656;SNPEFF_AMINO_ACID_CHANGE=E121;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_1066707_1066837;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    0/1:18,12:30:99:378,0,558
10    1068639    rs13377037    C    T    588.53    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.178;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.664;QD=13.69;ReadPosRankSum=0.474;SNPEFF_AMINO_ACID_CHANGE=T73;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_1068623_1068715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277517    GT:AD:DP:GQ:PL    0/1:21,22:43:99:619,0,624
10    1068802    rs3750729    G    A    258.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360803    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
10    1068849    rs3829163    C    T    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.79;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360803    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,112
10    1070461    rs3793777    C    T    735.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360803    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:768,57,0
10    1070710    rs12357207    C    G    642.36    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.317;QD=15.29;ReadPosRankSum=0.691;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360803    GT:AD:DP:GQ:PL    0/1:21,20:41:99:672,0,581
10    1087454    rs112832376    TA    T    131.89    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=16;FS=0.0;HRun=12;HaplotypeScore=54.2051;IndelType=D;MQ=57.34;MQ0=0;MQRankSum=1.286;QD=8.24;ReadPosRankSum=0.551;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427898    GT:AD:DP:GQ:PL    0/1:6,9:16:99:171,0,107
10    1120236    rs41299206    T    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263150    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    1126293    rs7087381    T    C    387.98    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.82;QD=13.86;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263150    GT:AD:DP:GQ:PL    0/1:13,15:28:99:418,0,442
10    1142208    rs10794716    T    C    1959.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.6;SNPEFF_AMINO_ACID_CHANGE=*250R;SNPEFF_CODON_CHANGE=Tga/Cga;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_10_1142110_1142566;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR37;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000381329    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1992,165,0
10    1228910    rs904959    A    G    46.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381305    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
10    1232500    rs7924253    G    A    439.61    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=34;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.343;QD=12.93;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381305    GT:AD:DP:GQ:PL    0/1:19,15:34:99:470,0,489
10    1262872    rs71507609    AG    A    169.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=29.1195;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=-1.067;QD=18.88;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381312    GT:AD:DP:GQ:PL    0/1:3,6:9:65.91:209,0,66
10    1279503    rs4880801    G    T    190.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.07;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381312    GT:AD:DP:GQ:PL    0/1:4,6:10:99:221,0,118
10    1406142    .    C    T    40.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381312    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:71,0,23
10    1421516    rs10794748    A    G    212.98    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=26.62;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381312    GT:AD:DP:GQ:PL    0/1:1,7:8:17.16:243,0,17
10    1577017    rs12249016    G    C    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.4;MQ0=0;QD=12.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381312    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
10    1577218    rs41313812    C    T    199.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381312    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:232,18,0
10    1577656    rs2676731    T    G    432.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381312    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:466,36,0
10    1779349    rs3750684    G    A    807.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=28.82;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_1779245_1779670;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADARB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381312    GT:AD:DP:GQ:PL    1/1:0,28:28:66.19:840,66,0
10    3124516    rs4881074    G    A    321.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
10    3124824    rs56335916    G    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
10    3143283    rs55882340    T    A    336.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=37.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:369,27,0
10    3143643    rs4881080    A    C    86.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=17.35;SNPEFF_AMINO_ACID_CHANGE=R106;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3143557_3143746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397834    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:119,9,0
10    3145885    rs10903966    T    C    602.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:636,48,0
10    3145906    rs11251719    A    C    797.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=37.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:831,60,0
10    3146155    rs2306293    C    G    286.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8237;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=15.94;ReadPosRankSum=0.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421751    GT:AD:DP:GQ:PL    0/1:8,10:18:99:317,0,223
10    3147456    rs4271292    C    T    90.16    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=6.94;ReadPosRankSum=1.003;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421751    GT:AD:DP:GQ:PL    0/1:9,4:13:99:120,0,324
10    3147508    rs4881082    C    T    420.36    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=27;Dels=0.0;FS=2.021;HRun=1;HaplotypeScore=0.9999;MQ=57.39;MQ0=0;MQRankSum=-0.929;QD=15.57;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421751    GT:AD:DP:GQ:PL    0/1:10,17:27:99:450,0,319
10    3147518    rs2388576    G    C    237.95    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.642;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.111;QD=7.93;ReadPosRankSum=0.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421751    GT:AD:DP:GQ:PL    0/1:13,17:30:99:268,0,309
10    3147519    rs2892549    G    C    213.98    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.483;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.085;QD=7.13;ReadPosRankSum=-0.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421751    GT:AD:DP:GQ:PL    0/1:13,17:30:99:244,0,372
10    3149402    rs10903967    A    G    728.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=28.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407806    GT:AD:DP:GQ:PL    1/1:0,26:26:60.18:762,60,0
10    3150973    rs1132173    C    T    552.39    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.057;DB;DP=39;Dels=0.0;FS=7.843;HRun=2;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=1.479;QD=14.16;ReadPosRankSum=0.662;SNPEFF_AMINO_ACID_CHANGE=F101;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3150893_3150985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415005    GT:AD:DP:GQ:PL    0/1:21,18:39:99:582,0,643
10    3151325    rs2306297    A    C    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.97;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407806    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:66,0,66
10    3154339    rs2306301    C    T    279.04    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.171;QD=14.69;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460445    GT:AD:DP:GQ:PL    0/1:7,12:19:99:309,0,195
10    3154534    rs2306304    A    G    412.66    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.482;DB;DP=29;Dels=0.0;FS=9.542;HRun=1;HaplotypeScore=1.8932;MQ=60.0;MQ0=0;MQRankSum=1.493;QD=14.23;ReadPosRankSum=1.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468050    GT:AD:DP:GQ:PL    0/1:15,14:29:99:443,0,451
10    3155173    rs7896691    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468050    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    3155237    rs6602024    A    G    71.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468050    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
10    3155263    rs7906901    T    C    130.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468050    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
10    3155408    rs3816700    C    T    166.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468050    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
10    3155428    rs3816701    C    T    207.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468050    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
10    3155540    rs4881085    A    G    362.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468050    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:396,33,0
10    3155620    rs1052309    A    G    510.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.03;SNPEFF_AMINO_ACID_CHANGE=A211;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3155564_3155708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415005    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:543,42,0
10    3155753    rs4881087    G    C    251.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415005    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:285,21,0
10    3158848    rs7086902    C    T    424.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=35.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415005    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:457,33,0
10    3159234    rs2306305    G    A    98.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=24.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415005    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:131,12,0
10    3159244    rs2306306    A    T    107.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=26.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415005    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
10    3159250    rs2306307    G    T    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
10    3160847    rs4881098    G    A    128.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
10    3160913    rs3829912    G    A    305.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.225;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=15.28;ReadPosRankSum=1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    0/1:10,10:20:99:336,0,201
10    3160917    rs3829913    T    C    699.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:732,57,0
10    3161131    rs3829914    C    T    214.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:247,18,0
10    3162033    rs6602025    T    C    732.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=28.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,26:26:60.17:765,60,0
10    3162410    rs3814588    T    A    63.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:95,9,0
10    3162423    rs6602026    G    A    85.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
10    3167465    rs3816703    A    G    558.48    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.617;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.215;QD=10.95;ReadPosRankSum=-0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381075    GT:AD:DP:GQ:PL    0/1:30,21:51:99:588,0,850
10    3174499    rs3830217    G    GC    1077.28    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.232;DB;DP=61;FS=0.0;HRun=2;HaplotypeScore=147.1583;IndelType=I;MQ=59.98;MQ0=0;MQRankSum=-1.412;QD=17.66;ReadPosRankSum=0.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:31,30:61:99:1116,0,936
10    3174815    rs72145058    CAACT    C    282.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=54.3105;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=-1.203;QD=23.58;ReadPosRankSum=-2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:6,6:12:99:322,0,220
10    3176456    rs2306312    G    A    37.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.49;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:3,2:5:67.43:67,0,82
10    3178076    rs11251741    A    T    442.97    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=17.04;ReadPosRankSum=0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:11,15:26:99:473,0,351
10    3178433    rs10903974    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    3178881    rs1053000    C    T    31.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.55;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:5,2:7:61.82:62,0,145
10    3178905    rs7673    T    A    36.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.06;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:4,2:6:66.35:66,0,140
10    3178915    rs541    C    T    36.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.35;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,92
10    3179663    rs11251744    G    A    291.61    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DB;DP=22;Dels=0.0;FS=4.434;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=13.25;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:9,13:22:99:322,0,266
10    3179842    rs2306319    C    T    151.82    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8664;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=13.8;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:5,6:11:99:182,0,165
10    3180227    rs6901    T    C    274.87    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.372;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=14.47;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=Q1030R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3179922_3180316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380980    GT:AD:DP:GQ:PL    0/1:8,11:19:99:305,0,206
10    3180818    rs10795007    G    A    67.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=9.69;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:4,3:7:97.79:98,0,128
10    3180951    rs2279216    G    A    1146.42    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=69;Dels=0.0;FS=3.045;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.584;QD=16.61;ReadPosRankSum=-0.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1176,0,976
10    3181003    rs2279217    A    G    1736.84    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.754;DB;DP=116;Dels=0.0;FS=7.406;HRun=1;HaplotypeScore=0.0;MQ=59.84;MQ0=0;MQRankSum=0.935;QD=14.97;ReadPosRankSum=-0.47;SNPEFF_AMINO_ACID_CHANGE=*185Q;SNPEFF_CODON_CHANGE=Tag/Cag;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_10_3180883_3181241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000455371    GT:AD:DP:GQ:PL    0/1:59,57:116:99:1767,0,1767
10    3181282    rs2279220    G    A    2069.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.147;DB;DP=126;Dels=0.0;FS=3.529;HRun=1;HaplotypeScore=2.3668;MQ=59.49;MQ0=0;MQRankSum=-1.027;QD=16.42;ReadPosRankSum=-0.575;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:56,70:126:99:2099,0,1670
10    3181442    rs2279221    T    C    115.06    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.825;QD=10.46;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:5,6:11:99:145,0,176
10    3183185    rs10903975    G    A    40.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.05;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:70,0,72
10    3183747    rs7094698    A    G    193.97    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.263;DB;DP=30;Dels=0.0;FS=1.764;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.086;QD=6.47;ReadPosRankSum=0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381072    GT:AD:DP:GQ:PL    0/1:21,9:30:99:224,0,668
10    3185798    rs3736093    T    C    197.47    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.289;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=13.16;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:7,8:15:99:227,0,231
10    3186458    rs3752803    C    G    206.65    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.546;QD=17.22;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:3,9:12:84.58:237,0,85
10    3187749    rs3758632    A    G    39.87    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=3.07;ReadPosRankSum=0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:10,3:13:69.86:70,0,369
10    3187924    rs3758631    T    C    527.58    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.134;DB;DP=41;Dels=0.0;FS=1.786;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.343;QD=12.87;ReadPosRankSum=-1.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:20,21:41:99:558,0,643
10    3189380    rs3740607    C    T    1548.99    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.595;DB;DP=116;Dels=0.0;FS=0.717;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.146;QD=13.35;ReadPosRankSum=0.497;SNPEFF_AMINO_ACID_CHANGE=P324;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3189342_3189442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380994    GT:AD:DP:GQ:PL    0/1:59,57:116:99:1579,0,1642
10    3190265    rs4881111    A    G    1152.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.855;DB;DP=98;Dels=0.0;FS=1.688;HRun=1;HaplotypeScore=1.2434;MQ=59.76;MQ0=0;MQRankSum=-1.007;QD=11.76;ReadPosRankSum=1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:49,49:98:99:1183,0,1521
10    3190298    rs4881112    C    T    1492.78    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=5.36;DB;DP=94;Dels=0.0;FS=1.778;HRun=1;HaplotypeScore=2.6827;MQ=59.51;MQ0=0;MQRankSum=-0.588;QD=15.88;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:46,47:94:99:1523,0,1346
10    3190699    rs2291102    G    A    78.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
10    3191527    rs2388557    T    C    40.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.23;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:71,0,32
10    3197592    rs3765099    G    A    269.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.088;QD=14.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:9,9:18:99:299,0,257
10    3198940    rs4612707    C    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:71,0,70
10    3199555    rs7086470    A    T    338.27    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.477;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=14.71;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:11,12:23:99:368,0,399
10    3200155    rs9423705    G    C    920.38    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=66;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=0.5784;MQ=59.65;MQ0=0;MQRankSum=0.732;QD=13.95;ReadPosRankSum=-0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:35,31:66:99:950,0,1119
10    3200292    rs3182535    G    A    1300.03    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=3.28;DB;DP=117;Dels=0.0;FS=3.507;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=11.11;ReadPosRankSum=-1.809;SNPEFF_AMINO_ACID_CHANGE=A365V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3200232_3200345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451104    GT:AD:DP:GQ:PL    0/1:66,51:117:99:1330,0,1973
10    3201010    rs3814592    C    T    434.22    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.07;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9958;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=19.74;ReadPosRankSum=-1.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488065    GT:AD:DP:GQ:PL    0/1:9,13:22:99:464,0,312
10    3201097    rs3814594    T    C    1019.36    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.774;DB;DP=70;Dels=0.0;FS=5.32;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.594;QD=14.56;ReadPosRankSum=-2.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488065    GT:AD:DP:GQ:PL    0/1:34,36:70:99:1049,0,1029
10    3202065    rs4242746    T    C    730.72    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.265;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.104;QD=15.22;ReadPosRankSum=2.265;SNPEFF_AMINO_ACID_CHANGE=I296V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3202040_3202128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451104    GT:AD:DP:GQ:PL    0/1:21,27:48:99:761,0,584
10    3202140    rs4242747    C    T    634.61    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=2.778;DB;DP=38;Dels=0.0;FS=3.673;HRun=0;HaplotypeScore=2.2337;MQ=59.39;MQ0=0;MQRankSum=1.296;QD=16.7;ReadPosRankSum=-0.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488065    GT:AD:DP:GQ:PL    0/1:16,21:38:99:665,0,360
10    3205709    rs6602033    C    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
10    3205851    rs6602034    C    G    932.16    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.028;DB;DP=64;Dels=0.0;FS=3.777;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.443;QD=14.56;ReadPosRankSum=0.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:33,31:64:99:962,0,1112
10    3206027    rs4609511    A    G    1710.35    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.058;DB;DP=113;Dels=0.0;FS=0.762;HRun=2;HaplotypeScore=3.5119;MQ=59.59;MQ0=0;MQRankSum=-1.389;QD=15.14;ReadPosRankSum=1.511;SNPEFF_AMINO_ACID_CHANGE=P195;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3205917_3206077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451104    GT:AD:DP:GQ:PL    0/1:54,59:113:99:1740,0,1672
10    3208210    rs3829919    T    C    204.78    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=13.65;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:8,7:15:99:235,0,249
10    3208557    rs12359035    A    G    582.11    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.64;DB;DP=90;Dels=0.0;FS=4.003;HRun=1;HaplotypeScore=0.8321;MQ=54.62;MQ0=1;MQRankSum=-2.76;QD=6.47;ReadPosRankSum=-2.028;SNPEFF_AMINO_ACID_CHANGE=T62;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_3208421_3208572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451104    GT:AD:DP:GQ:PL    0/1:58,32:90:99:612,0,1977
10    3208581    rs58131139    G    GA    440.01    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=4.494;DB;DP=77;FS=5.577;HRun=2;HaplotypeScore=390.6857;IndelType=I;MQ=51.39;MQ0=1;MQRankSum=-3.472;QD=5.64;ReadPosRankSum=-0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PITRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224949    GT:AD:DP:GQ:PL    0/1:60,18:77:99:479,0,2220
10    3821561    rs17731    G    A    31.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.29;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322510    GT:AD:DP:GQ:PL    0/1:4,2:6:61.75:62,0,117
10    3827210    rs11544694    G    T    194.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=14;Dels=0.0;FS=6.803;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.865;QD=13.86;ReadPosRankSum=1.468;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_3827105_3827392;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322510    GT:AD:DP:GQ:PL    0/1:6,8:14:99:224,0,201
10    4873106    rs1005907    T    C    186.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=20.68;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298375    GT:AD:DP:GQ:PL    0/1:3,6:9:93.99:216,0,94
10    4877814    .    T    TTTTTG    347.42    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DP=15;FS=0.0;HRun=0;HaplotypeScore=61.4289;IndelType=I;MQ=61.43;MQ0=0;MQRankSum=0.177;QD=23.16;ReadPosRankSum=-1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298375    GT:AD:DP:GQ:PL    0/1:9,5:15:99:386,0,428
10    4878132    rs2961580    A    C    117.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298375    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
10    4879465    rs2961584    T    C    231.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298375    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:265,21,0
10    4884784    rs2924269    T    C    392.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462718    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:426,36,0
10    4884800    rs2961592    A    G    154.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.33;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462718    GT:AD:DP:GQ:PL    0/1:3,5:8:92.22:185,0,92
10    4887988    rs2924267    G    A    537.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.967;DB;DP=46;Dels=0.0;FS=4.288;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.417;QD=11.69;ReadPosRankSum=0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298375    GT:AD:DP:GQ:PL    0/1:23,23:46:99:568,0,672
10    4889525    rs2961597    T    C    682.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441590    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:715,57,0
10    4929456    rs3924662    T    C    110.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-397P14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281339    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
10    4929527    rs3924661    C    T    143.47    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=3.282;HRun=1;HaplotypeScore=0.0;MQ=55.64;MQ0=0;MQRankSum=0.529;QD=11.96;ReadPosRankSum=-0.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-397P14.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281339    GT:AD:DP:GQ:PL    0/1:7,5:12:99:173,0,218
10    4930413    .    AGTT    A    2019.71    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=7.666;DP=96;FS=7.0;HRun=0;HaplotypeScore=372.8877;IndelType=D;MQ=58.27;MQ0=0;MQRankSum=-0.253;QD=21.04;ReadPosRankSum=0.949;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434459    GT:AD:DP:GQ:PL    0/1:50,46:96:99:2059,0,2922
10    4930520    rs7090869    A    T    573.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434459    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:606,45,0
10    4930656    rs6601867    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434459    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    4931990    rs10904367    T    C    439.62    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=34;Dels=0.0;FS=5.902;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.347;QD=12.93;ReadPosRankSum=-0.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434459    GT:AD:DP:GQ:PL    0/1:19,15:34:99:470,0,620
10    4932085    rs10904368    G    A    1178.46    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=5.388;DB;DP=79;Dels=0.0;FS=1.934;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.892;QD=14.92;ReadPosRankSum=-0.393;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434459    GT:AD:DP:GQ:PL    0/1:39,40:79:99:1208,0,1047
10    4934211    rs7922573    G    A    932.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.85;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434459    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:965,72,0
10    5005761    rs141022982    A    T    585.93    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=75;Dels=0.0;FS=10.651;HRun=1;HaplotypeScore=0.6651;MQ=23.64;MQ0=23;MQRankSum=-0.064;QD=7.81;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380872    GT:AD:DP:GQ:PL    0/1:45,30:75:99:616,0,537
10    5005855    rs116910432    A    G    49.65    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=18;Dels=0.0;FS=2.846;HRun=0;HaplotypeScore=0.0;MQ=33.49;MQ0=0;MQRankSum=0.796;QD=2.76;ReadPosRankSum=-1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380872    GT:AD:DP:GQ:PL    0/1:14,4:18:79.64:80,0,397
10    5006119    rs41305667    G    A    91.74    MQFilter40;QDFilter2    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=47;Dels=0.0;FS=6.286;HRun=1;HaplotypeScore=0.0;MQ=16.54;MQ0=28;MQRankSum=0.972;QD=1.95;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380859    GT:AD:DP:GQ:PL    0/1:30,17:47:99:122,0,234
10    5009347    rs4445550    A    G    250.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.088;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.821;QD=13.93;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476100    GT:AD:DP:GQ:PL    0/1:10,8:18:99:281,0,353
10    5009364    rs2904802    T    C    179.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=14.94;ReadPosRankSum=1.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476100    GT:AD:DP:GQ:PL    0/1:6,6:12:99:209,0,206
10    5010319    rs12264439    G    A    35.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.89;MQ0=0;MQRankSum=0.0;QD=8.78;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476100    GT:AD:DP:GQ:PL    0/1:2,2:4:65.11:65,0,67
10    5010572    rs1138600    A    G    381.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.94;MQ0=74;QD=3.85;SNPEFF_AMINO_ACID_CHANGE=T147;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5010501_5010578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380872    GT:AD:DP:GQ:PL    1/1:37,62:99:42.05:414,42,0
10    5010722    rs41314625    G    A    209.50    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=30.21;MQ0=0;MQRankSum=-0.597;QD=13.09;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476100    GT:AD:DP:GQ:PL    0/1:6,10:16:99:239,0,132
10    5011278    rs76142681    G    A    555.34    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.882;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.709;QD=27.77;ReadPosRankSum=-0.236;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476100    GT:AD:DP:GQ:PL    0/1:4,16:20:99:585,0,109
10    5014545    rs67671072    T    TA    257.97    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=19;FS=2.187;HRun=8;HaplotypeScore=43.7829;IndelType=I;MQ=47.65;MQ0=0;MQRankSum=-0.271;QD=13.58;ReadPosRankSum=1.464;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380859    GT:AD:DP:GQ:PL    0/1:9,10:19:99:297,0,117
10    5014992    .    C    T    39.02    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.61;MQ0=10;MQRankSum=1.951;QD=1.95;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380859    GT:AD:DP:GQ:PL    1/1:12,8:20:8.98:71,9,0
10    5019959    rs8483    G    A    542.58    MQFilter40    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.189;DB;DP=54;Dels=0.0;FS=1.582;HRun=0;HaplotypeScore=0.0;MQ=28.43;MQ0=12;MQRankSum=-1.333;QD=10.05;ReadPosRankSum=-0.101;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477661    GT:AD:DP:GQ:PL    0/1:31,23:54:99:573,0,608
10    5032284    rs67218977    C    T    470.15    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.459;DB;DP=37;Dels=0.0;FS=2.121;HRun=0;HaplotypeScore=0.8941;MQ=48.31;MQ0=0;MQRankSum=-0.743;QD=12.71;ReadPosRankSum=-0.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380753    GT:AD:DP:GQ:PL    0/1:19,18:37:99:500,0,511
10    5037718    rs183737995    A    G    343.92    MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.866;DB;DP=57;Dels=0.0;FS=5.391;HRun=1;HaplotypeScore=0.0;MQ=24.05;MQ0=20;MQRankSum=-0.076;QD=6.03;ReadPosRankSum=1.291;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455190    GT:AD:DP:GQ:PL    0/1:31,26:57:99:374,0,402
10    5040518    rs2490065    G    A    91.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455190    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    5042664    rs2275929    C    T    329.52    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.971;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.795;QD=10.98;ReadPosRankSum=-0.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380753    GT:AD:DP:GQ:PL    0/1:17,13:30:99:360,0,578
10    5045862    rs67165977    A    G    1021.32    MQFilter40    AB=0.266;AC=1;AF=0.50;AN=2;BaseQRankSum=1.103;DB;DP=64;Dels=0.0;FS=4.978;HRun=2;HaplotypeScore=1.5449;MQ=29.84;MQ0=12;MQRankSum=1.205;QD=15.96;ReadPosRankSum=0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380753    GT:AD:DP:GQ:PL    0/1:17,47:64:72.32:1051,0,72
10    5136651    rs12529    C    G    829.59    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.761;QD=12.38;ReadPosRankSum=0.658;SNPEFF_AMINO_ACID_CHANGE=H5Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5135985_5136720;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380554    GT:AD:DP:GQ:PL    0/1:40,27:67:99:860,0,1184
10    5139685    rs12387    G    A    1248.08    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.032;DB;DP=101;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.8184;MQ=60.0;MQ0=0;MQRankSum=0.376;QD=12.36;ReadPosRankSum=-0.507;SNPEFF_AMINO_ACID_CHANGE=K104;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5139626_5139742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380554    GT:AD:DP:GQ:PL    0/1:53,48:101:99:1278,0,1535
10    5139815    rs2245191    C    A    352    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.815;DB;DP=34;Dels=0.0;FS=8.402;HRun=2;HaplotypeScore=1.9265;MQ=60.0;MQ0=0;MQRankSum=-1.666;QD=10.35;ReadPosRankSum=0.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470862    GT:AD:DP:GQ:PL    0/1:21,13:34:99:382,0,692
10    5141307    rs1937840    C    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470862    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
10    5144599    rs10904419    T    C    184.17    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.136;DB;DP=25;Dels=0.0;FS=2.05;HRun=0;HaplotypeScore=0.0;MQ=40.32;MQ0=0;MQRankSum=-0.495;QD=7.37;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470862    GT:AD:DP:GQ:PL    0/1:17,8:25:99:214,0,519
10    5144635    rs4347280    T    C    195.62    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.218;DB;DP=40;Dels=0.0;FS=3.427;HRun=1;HaplotypeScore=0.734;MQ=31.37;MQ0=9;MQRankSum=0.136;QD=4.89;ReadPosRankSum=-0.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470862    GT:AD:DP:GQ:PL    0/1:25,15:40:99:226,0,511
10    5144969    rs12769666    C    T    108.95    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=0.0;QD=18.16;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480697    GT:AD:DP:GQ:PL    0/1:2,4:6:43.97:139,0,44
10    5147670    rs35768949    A    G    43.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.82;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380554    GT:AD:DP:GQ:PL    0/1:2,2:4:51.88:73,0,52
10    5147909    rs2275928    G    A    260.31    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=15;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=17.35;ReadPosRankSum=0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380554    GT:AD:DP:GQ:PL    0/1:7,8:15:99:290,0,209
10    5149703    rs3209896    G    A    331.24    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.136;DB;DP=38;Dels=0.0;FS=1.348;HRun=0;HaplotypeScore=0.9789;MQ=58.78;MQ0=0;MQRankSum=-0.741;QD=8.72;ReadPosRankSum=0.56;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380554    GT:AD:DP:GQ:PL    0/1:24,14:38:99:361,0,691
10    5196273    rs1781930    A    G    86.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=6.17;ReadPosRankSum=-0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465430    GT:AD:DP:GQ:PL    0/1:10,4:14:99:116,0,369
10    5197881    rs1781931    A    G    698.41    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=53;Dels=0.0;FS=1.179;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.096;QD=13.18;ReadPosRankSum=1.345;SNPEFF_AMINO_ACID_CHANGE=D134;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5197879_5197952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000473890    GT:AD:DP:GQ:PL    0/1:28,25:53:99:728,0,874
10    5199934    rs1781935    G    C    200.23    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=3.31;DB;DP=23;Dels=0.0;FS=2.205;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=8.71;ReadPosRankSum=1.74;SNPEFF_AMINO_ACID_CHANGE=R78G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5199836_5200001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000473890    GT:AD:DP:GQ:PL    0/1:15,8:23:99:230,0,434
10    5200059    rs1761601    T    C    217.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.893;DB;DP=20;Dels=0.0;FS=5.929;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.347;QD=10.86;ReadPosRankSum=1.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:12,8:20:99:247,0,399
10    5200638    rs1781937    G    A    57.58    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.254;QD=4.43;ReadPosRankSum=1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:10,3:13:87.58:88,0,319
10    5200739    rs5782810    T    TAGG    1730.32    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.328;DB;DP=83;FS=5.809;HRun=0;HaplotypeScore=267.3928;IndelType=I;MQ=58.26;MQ0=0;MQRankSum=1.48;QD=20.6;ReadPosRankSum=1.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:56,28:83:99:1769,0,2287
10    5201082    rs1155931    T    C    93.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.34;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:3,4:7:99:123,0,100
10    5201979    rs1781939    T    A    203.53    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.58;MQ0=0;MQRankSum=-0.898;QD=20.35;ReadPosRankSum=0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:2,8:10:54.69:234,0,55
10    5201996    rs66462993    CA    C    323.31    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=87.4222;IndelType=D;MQ=47.87;MQ0=0;MQRankSum=-2.18;QD=21.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:4,11:14:87.57:362,0,88
10    5202060    rs1781940    C    T    557.88    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.119;DB;DP=32;Dels=0.0;FS=4.172;HRun=0;HaplotypeScore=0.6651;MQ=48.76;MQ0=0;MQRankSum=-2.857;QD=17.43;ReadPosRankSum=0.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:11,21:32:99:588,0,306
10    5202104    rs2801889    C    T    277.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.44;MQ0=0;MQRankSum=-2.801;QD=10.69;ReadPosRankSum=-0.68;SNPEFF_AMINO_ACID_CHANGE=R11K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5202082_5202135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000473890    GT:AD:DP:GQ:PL    0/1:13,13:26:99:308,0,419
10    5203748    rs3750573    A    G    1001.23    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.455;DB;DP=56;Dels=0.0;FS=2.337;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.575;QD=17.88;ReadPosRankSum=2.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:21,35:56:99:1031,0,603
10    5204676    rs7080497    A    C    418.63    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.962;QD=15.5;ReadPosRankSum=-0.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKR1CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334314    GT:AD:DP:GQ:PL    0/1:11,16:27:99:449,0,365
10    5242164    rs17306779    A    G    301.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.534;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.24;MQ0=0;MQRankSum=2.1;QD=7.74;ReadPosRankSum=1.356;SNPEFF_AMINO_ACID_CHANGE=V35;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5242144_5242311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:26,13:39:99:332,0,878
10    5242346    rs7099651    G    A    1484.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.29;MQ0=0;QD=37.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469875    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1518,111,0
10    5246125    rs77697233    C    T    112.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.01;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:3,4:7:99:142,0,102
10    5246177    rs3039101    T    TGTA    586.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=103.014;IndelType=I;MQ=49.96;MQ0=0;MQRankSum=-2.021;QD=39.11;ReadPosRankSum=-1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:5,10:15:99:626,0,200
10    5246210    rs146562425    AAAAC    A    470.61    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.439;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=132.479;IndelType=D;MQ=50.49;MQ0=0;MQRankSum=-2.684;QD=22.41;ReadPosRankSum=2.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:11,10:21:99:510,0,750
10    5246584    rs11253042    C    A    1147.80    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.45;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9203;MQ=58.95;MQ0=0;MQRankSum=1.355;QD=13.04;ReadPosRankSum=1.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:47,41:88:99:1178,0,1511
10    5246670    rs1413781    A    C    1770.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=36.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397357    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1804,132,0
10    5247631    rs3750568    G    A    256.13    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=17.08;ReadPosRankSum=0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397357    GT:AD:DP:GQ:PL    0/1:7,8:15:99:286,0,211
10    5247634    rs3750567    G    A    249.54    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.993;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=16.64;ReadPosRankSum=-0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397357    GT:AD:DP:GQ:PL    0/1:7,8:15:99:280,0,224
10    5247701    rs7921838    G    A    524.38    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.93;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=13.8;ReadPosRankSum=2.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397357    GT:AD:DP:GQ:PL    0/1:18,20:38:99:554,0,645
10    5247784    rs3829125    C    G    672.20    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.478;DB;DP=60;Dels=0.0;FS=7.449;HRun=0;HaplotypeScore=0.7887;MQ=59.69;MQ0=0;MQRankSum=-1.612;QD=11.2;ReadPosRankSum=0.152;SNPEFF_AMINO_ACID_CHANGE=S145C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5247720_5247797;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:37,23:60:99:702,0,1127
10    5254428    rs915135    T    C    88.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
10    5254452    rs1413780    A    C    75.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.98;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:106,0,30
10    5254847    rs1832007    A    G    98.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=9.84;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:6,4:10:99:128,0,209
10    5255025    rs4880718    A    G    1007.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=29.62;SNPEFF_AMINO_ACID_CHANGE=Q250R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5254957_5255122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    1/1:0,34:34:84.23:1040,84,0
10    5258571    rs2050308    G    A    65.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=54.65;MQ0=0;MQRankSum=0.322;QD=7.32;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:5,4:9:95.89:96,0,171
10    5260611    rs72003850    TTCAC    T    401.01    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=93.3217;IndelType=D;MQ=58.74;MQ0=0;MQRankSum=0.847;QD=25.06;ReadPosRankSum=-2.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:7,9:16:99:440,0,540
10    5260682    rs17134592    C    G    305.13    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=27;Dels=0.0;FS=1.471;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=-0.17;QD=11.3;ReadPosRankSum=-1.965;SNPEFF_AMINO_ACID_CHANGE=L311V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5260681_5260912;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    0/1:14,13:27:99:335,0,468
10    5260812    rs2398157    A    G    295.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AKR1C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263126    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:329,24,0
10    5435918    rs7097775    G    A    883.63    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=2.126;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9048;MQ=59.56;MQ0=0;MQRankSum=0.224;QD=16.99;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A261;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5435232_5436424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBAL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479328    GT:AD:DP:GQ:PL    0/1:21,31:52:99:914,0,605
10    5436260    rs7910290    A    G    158.21    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.609;DB;DP=37;Dels=0.0;FS=9.049;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-2.195;QD=4.28;ReadPosRankSum=-1.125;SNPEFF_AMINO_ACID_CHANGE=A147;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5435232_5436424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBAL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479328    GT:AD:DP:GQ:PL    0/1:29,8:37:99:188,0,977
10    5436487    rs6601957    A    G    70.34    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.758;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.485;QD=5.02;ReadPosRankSum=-0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380419    GT:AD:DP:GQ:PL    0/1:10,4:14:99:100,0,376
10    5437365    rs11253156    A    G    1053.35    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=71;Dels=0.0;FS=0.937;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=14.84;ReadPosRankSum=-1.472;SNPEFF_AMINO_ACID_CHANGE=A107;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5437290_5437438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBAL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380419    GT:AD:DP:GQ:PL    0/1:27,44:71:99:1083,0,782
10    5446794    rs7477466    C    T    129.86    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=2.117;QD=7.64;ReadPosRankSum=0.212;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380419    GT:AD:DP:GQ:PL    0/1:9,8:17:99:160,0,276
10    5470944    rs4433477    T    C    36.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355029    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
10    5471200    rs4604777    C    T    1629.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355029    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1662,129,0
10    5488580    rs7090012    C    G    53.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=8.98;ReadPosRankSum=-0.988;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_5488574_5488821;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NET1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380359    GT:AD:DP:GQ:PL    0/1:3,3:6:83.85:84,0,102
10    5494616    rs7076839    A    G    330.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355029    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:364,27,0
10    5495157    rs11253185    A    G    1135.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.782;DB;DP=80;Dels=0.0;FS=8.187;HRun=1;HaplotypeScore=2.951;MQ=59.42;MQ0=0;MQRankSum=0.55;QD=14.19;ReadPosRankSum=0.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465087    GT:AD:DP:GQ:PL    0/1:43,37:80:99:1165,0,1242
10    5495218    rs4567355    T    C    4391.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=Y146;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5495213_5495309;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NET1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380359    GT:AD:DP:GQ:PL    1/1:0,132:133:99:4392,322,0
10    5498248    rs4242790    G    T    376.42    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.501;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=25.09;ReadPosRankSum=-1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449083    GT:AD:DP:GQ:PL    0/1:4,11:15:99:406,0,122
10    5541230    rs11546426    T    C    418.85    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.671;DB;DP=36;Dels=0.0;FS=10.889;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.016;QD=11.63;ReadPosRankSum=1.066;SNPEFF_AMINO_ACID_CHANGE=S58G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5540658_5541533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALML5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380332    GT:AD:DP:GQ:PL    0/1:20,16:36:99:449,0,646
10    5558145    rs5782832    G    GC    835.99    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.213;DB;DP=60;FS=3.98;HRun=1;HaplotypeScore=134.3568;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=-0.206;QD=13.93;ReadPosRankSum=1.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-116G8.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542093    GT:AD:DP:GQ:PL    0/1:39,21:60:99:875,0,1010
10    5558349    rs4072067    G    A    270.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.706;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=15.01;ReadPosRankSum=-1.413;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-116G8.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542093    GT:AD:DP:GQ:PL    0/1:9,9:18:99:300,0,322
10    5674758    rs4749853    T    A    71.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AL365356.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495609    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
10    5674928    rs143187882    G    A    453.58    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=0.053;DB;DP=49;Dels=0.0;FS=1.142;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.271;QD=9.26;ReadPosRankSum=-1.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AL365356.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495609    GT:AD:DP:GQ:PL    0/1:32,17:49:99:484,0,1005
10    5682641    rs7896492    C    T    883.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466389    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:916,72,0
10    5682855    rs4427479    T    C    1162.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466389    GT:AD:DP:GQ:PL    1/1:0,31:31:90.29:1195,90,0
10    5682856    rs7893640    G    C    1011.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466389    GT:AD:DP:GQ:PL    1/1:0,31:31:90.22:1045,90,0
10    5684342    rs6602421    C    G    199.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357700    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:232,21,0
10    5690730    rs34682277    C    A    127.49    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.994;MQ=56.04;MQ0=0;MQRankSum=0.788;QD=7.08;ReadPosRankSum=-2.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482921    GT:AD:DP:GQ:PL    0/1:8,10:18:99:157,0,234
10    5693379    rs6602483    A    G    175.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357700    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
10    5766337    rs10737018    G    A    745.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480839    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:779,57,0
10    5781628    rs2254067    T    G    2413.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=31.76;SNPEFF_AMINO_ACID_CHANGE=C499G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5781581_5782460;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2447,196,0
10    5781969    rs2797486    A    T    2605.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_AMINO_ACID_CHANGE=T612;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5781581_5782460;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2639,190,0
10    5784151    rs45575338    A    G    664.70    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=52;Dels=0.0;FS=1.143;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.111;QD=12.78;ReadPosRankSum=-0.138;SNPEFF_AMINO_ACID_CHANGE=I807V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5784060_5784489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    0/1:24,28:52:99:695,0,723
10    5784509    rs2797488    G    A    733.06    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.503;QD=20.36;ReadPosRankSum=0.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    0/1:14,22:36:99:763,0,438
10    5784649    rs7100576    G    A    35.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.83;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    0/1:2,2:4:65.32:65,0,66
10    5788110    rs59659624    A    AT    968.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.599;DB;DP=81;FS=0.0;HRun=15;HaplotypeScore=440.166;IndelType=I;MQ=55.42;MQ0=0;MQRankSum=-1.719;QD=11.95;ReadPosRankSum=-1.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    1/1:23,32:81:46.14:1010,46,0
10    5788608    rs2797491    G    C    2289.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=R1075P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5788142_5791990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2322,178,0
10    5790420    rs2669142    T    C    1677.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=V1679A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5788142_5791990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1711,126,0
10    5791895    rs147954390    G    A    518.34    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.483;DB;DP=29;Dels=0.0;FS=3.473;HRun=0;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;MQRankSum=-1.306;QD=17.87;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=V1366I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5788794_5791990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442808    GT:AD:DP:GQ:PL    0/1:12,17:29:99:548,0,344
10    5798413    rs2797495    T    G    121.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
10    5798730    rs3793707    G    T    527.78    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.037;QD=13.53;ReadPosRankSum=-1.925;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    0/1:20,19:39:99:558,0,635
10    5799286    rs2246399    T    A    53.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=5.94;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    0/1:6,3:9:83.47:83,0,193
10    5799613    rs2275774    A    G    1635.39    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.344;DB;DP=118;Dels=0.0;FS=7.158;HRun=1;HaplotypeScore=2.8052;MQ=59.45;MQ0=0;MQRankSum=-0.367;QD=13.86;ReadPosRankSum=-0.538;SNPEFF_AMINO_ACID_CHANGE=K1483R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5799483_5799636;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442808    GT:AD:DP:GQ:PL    0/1:59,58:118:99:1665,0,1768
10    5804388    rs2797500    T    C    226.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487196    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:260,21,0
10    5804455    rs3736462    A    G    318.76    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.861;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.29;MQ0=0;MQRankSum=-3.223;QD=9.96;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487196    GT:AD:DP:GQ:PL    0/1:19,13:32:99:349,0,604
10    5804471    rs35876870    G    GT    398.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.871;DB;DP=45;FS=0.0;HRun=2;HaplotypeScore=743.0881;IndelType=I;MQ=39.71;MQ0=0;MQRankSum=-0.184;QD=8.85;ReadPosRankSum=-2.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487196    GT:AD:DP:GQ:PL    1/1:24,9:45:79.39:440,79,0
10    5804474    rs59569509    G    T    317.91    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.02;FS=0.0;HRun=15;HaplotypeScore=23.6877;MQ=39.71;MQ0=0;QD=7.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487196    GT:AD:DP:GQ:PL    1/1:0,44:44:33.06:351,33,0
10    5804531    rs2797501    G    A    1692.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.763;MQ=49.64;MQ0=0;QD=24.89;SNPEFF_AMINO_ACID_CHANGE=S1599N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5804495_5804609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442808    GT:AD:DP:GQ:PL    1/1:0,67:68:99:1725,132,0
10    5804633    rs79988786    T    TTC    1635.47    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.71;DB;DP=74;FS=0.0;HRun=0;HaplotypeScore=203.6948;IndelType=I;MQ=54.03;MQ0=0;MQRankSum=1.581;QD=22.1;ReadPosRankSum=-0.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487196    GT:AD:DP:GQ:PL    0/1:39,35:74:99:1675,0,1343
10    5808086    rs1129614    G    A    756.52    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.473;DB;DP=46;Dels=0.0;FS=4.427;HRun=0;HaplotypeScore=0.8941;MQ=59.5;MQ0=0;MQRankSum=0.627;QD=16.45;ReadPosRankSum=0.231;SNPEFF_AMINO_ACID_CHANGE=P187L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5807812_5808115;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447751    GT:AD:DP:GQ:PL    0/1:22,24:46:99:787,0,684
10    5810044    rs144420782    A    AT    151.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;FS=0.0;HRun=7;HaplotypeScore=22.7096;IndelType=I;MQ=53.44;MQ0=0;MQRankSum=-1.203;QD=16.82;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328090    GT:AD:DP:GQ:PL    0/1:3,6:9:59.87:190,0,60
10    5826948    rs10752108    A    G    311.16    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.4641;MQ=52.65;MQ0=0;QD=31.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:344,30,0
10    5826956    rs139659767    CATT    C    416.48    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=122.9629;IndelType=D;MQ=53.4;MQ0=0;MQRankSum=-0.423;QD=32.04;ReadPosRankSum=0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    0/1:3,10:13:99:456,0,166
10    5826986    rs11598374    T    C    402.88    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.702;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.82;MQ0=0;MQRankSum=-0.471;QD=19.18;ReadPosRankSum=1.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    0/1:8,13:21:99:433,0,262
10    5827074    rs10795547    G    A    813.09    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=55;Dels=0.0;FS=8.753;HRun=1;HaplotypeScore=1.9581;MQ=57.44;MQ0=0;MQRankSum=1.158;QD=14.78;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    0/1:24,31:55:99:843,0,771
10    5827329    rs147494782    ATCT    A    495.03    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=78.9709;IndelType=D;MQ=55.8;MQ0=0;MQRankSum=-0.328;QD=24.75;ReadPosRankSum=1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    0/1:8,12:20:99:534,0,344
10    5837038    rs10752110    T    C    376.63    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.07;MQ0=0;MQRankSum=-1.415;QD=15.07;ReadPosRankSum=1.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    0/1:12,13:25:99:407,0,390
10    5842356    rs2175629    T    C    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    5853767    rs1567706    T    C    136.46    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.101;QD=10.5;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    0/1:7,6:13:99:166,0,245
10    5853817    rs1567707    G    C    563.98    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=3.624;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.71;QD=17.09;ReadPosRankSum=1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380127    GT:AD:DP:GQ:PL    0/1:14,19:33:99:594,0,359
10    5919859    rs2985042    C    T    133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000191063    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
10    5919947    rs2985043    C    T    913.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000191063    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:946,72,0
10    5920121    rs1052420    T    C    4531.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=59.53;MQ0=0;QD=32.84;SNPEFF_AMINO_ACID_CHANGE=Q353R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5920050_5920250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380092    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4532,367,0
10    5922186    rs811561    T    A    299.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;QD=27.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492368    GT:AD:DP:GQ:PL    1/1:0,11:11:27.06:333,27,0
10    5924942    rs617165    C    G    656.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000191063    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:690,51,0
10    5925971    rs631947    C    A    1644.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=G216;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_5925932_5926040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000191063    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1678,123,0
10    5950771    rs632639    A    G    360.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=27.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462507    GT:AD:DP:GQ:PL    1/1:0,13:13:36.08:393,36,0
10    5951025    rs595923    T    C    1578.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462507    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1612,129,0
10    5958072    rs668498    A    G    113.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460453    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
10    5960499    rs2274027    A    G    481.07    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8857;MQ=60.0;MQ0=0;MQRankSum=-0.85;QD=15.52;ReadPosRankSum=1.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460453    GT:AD:DP:GQ:PL    0/1:15,16:31:99:511,0,517
10    5965695    rs41290321    C    T    262.58    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.072;DB;DP=22;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=11.94;ReadPosRankSum=1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362091    GT:AD:DP:GQ:PL    0/1:13,9:22:99:293,0,321
10    5966190    rs2274029    G    A    170.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362091    GT:AD:DP:GQ:PL    1/1:0,9:9:21.03:203,21,0
10    5966192    rs2274030    A    G    139.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362091    GT:AD:DP:GQ:PL    1/1:0,10:10:18.03:173,18,0
10    5967158    rs2669126    C    T    205.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475867    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
10    5978411    rs646406    T    C    1374.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362091    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1408,111,0
10    5978795    rs673496    A    G    73.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362091    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:106,9,0
10    5991344    rs41294013    T    C    57.97    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.14;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319465    GT:AD:DP:GQ:PL    0/1:11,3:14:87.96:88,0,334
10    5998285    rs3136627    G    A    122.95    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.59;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429135    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:153,0,26
10    6001696    rs3136618    C    T    789.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429135    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:823,60,0
10    6002368    rs2228059    T    G    1254.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_AMINO_ACID_CHANGE=N117T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_6002330_6002530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15RA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397251    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1287,99,0
10    6005674    rs3136614    G    A    205.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL15RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319465    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
10    6041769    rs41294643    G    A    347.27    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=3.435;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.13;MQ0=0;MQRankSum=0.837;QD=13.89;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,12:25:99:377,0,280
10    6041873    rs11596136    C    T    642.46    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.417;DB;DP=34;Dels=0.0;FS=1.671;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.452;QD=18.9;ReadPosRankSum=-0.157;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,20:34:99:672,0,377
10    6041923    rs10905599    T    C    398.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.749;DB;DP=25;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.804;QD=15.94;ReadPosRankSum=0.028;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,15:25:99:428,0,328
10    6042034    rs10795731    C    T    159.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
10    6061277    rs7069976    G    A    609.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256876    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:643,48,0
10    6061781    rs10752175    T    C    822.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256876    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:855,66,0
10    6062051    rs9804284    T    A    173.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256876    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:206,18,0
10    6063383    rs942199    T    C    1292.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256876    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1326,99,0
10    6063674    rs942200    T    C    905.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256876    GT:AD:DP:GQ:PL    1/1:0,31:31:81.23:939,81,0
10    6066195    rs12358961    T    A    304.17    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.842;DB;DP=32;Dels=0.0;FS=4.43;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.23;QD=9.51;ReadPosRankSum=-0.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256876    GT:AD:DP:GQ:PL    0/1:19,13:32:99:334,0,624
10    6066200    rs11256369    C    G    555.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=30;Dels=0.0;FS=4.467;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=18.52;ReadPosRankSum=0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256876    GT:AD:DP:GQ:PL    0/1:12,18:30:99:585,0,410
10    6067688    rs2025345    A    G    106.19    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.17;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256876    GT:AD:DP:GQ:PL    0/1:3,4:7:99:136,0,102
10    6150828    .    GCTCTGTC    G    619.35    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=277.2677;IndelType=D;MQ=29.0;MQ0=0;QD=68.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467214    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:661,27,0
10    6150848    rs75593307    ACCTG    A    522.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=270.35;IndelType=D;MQ=29.0;MQ0=0;QD=58.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467214    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:565,27,0
10    6151817    rs41295349    T    G    279.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=17.45;ReadPosRankSum=2.224;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467214    GT:AD:DP:GQ:PL    0/1:6,10:16:99:309,0,201
10    6155806    rs2274359    T    C    40.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.07;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418631    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,70
10    6155847    rs2274358    A    G    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418631    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,71
10    6155870    rs2274357    T    C    31.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.27;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418631    GT:AD:DP:GQ:PL    0/1:3,2:5:61.32:61,0,109
10    6156118    rs10795823    T    C    420.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418631    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:453,39,0
10    6255280    rs2073628    C    T    70.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
10    6258015    rs2148293    T    C    927.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,31:31:72.21:960,72,0
10    6258052    rs2148294    G    A    1265.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1299,99,0
10    6258300    rs2516622    A    C    218.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=24.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,9:9:24.02:252,24,0
10    6258311    rs2516623    T    C    189.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=23.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:223,21,0
10    6258796    rs2182412    T    C    1661.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1695,135,0
10    6258840    rs5782881    GC    G    1074.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=3;HaplotypeScore=161.1458;IndelType=D;MQ=60.36;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,30:30:90.28:1116,90,0
10    6258937    rs2765827    A    G    436.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.77;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:469,39,0
10    6259239    rs2516624    G    A    697.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,20:21:54.18:731,54,0
10    6259285    rs10906022    G    A    157.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=22.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,6:7:15.05:191,15,0
10    6261704    rs1557111    T    C    652.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.566;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=1.33;QD=18.63;ReadPosRankSum=1.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    0/1:14,21:35:99:682,0,389
10    6261751    rs146077775    TA    T    127.12    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.905;DB;DP=20;FS=0.0;HRun=7;HaplotypeScore=85.8395;IndelType=D;MQ=59.39;MQ0=0;MQRankSum=0.106;QD=6.36;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    0/1:13,7:20:99:166,0,284
10    6262459    rs10466308    T    C    82.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
10    6262468    rs10466309    G    A    34.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:66,6,0
10    6262905    rs3084010    G    GTGC    452.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=68.8475;IndelType=I;MQ=62.13;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:6,7:15:27.09:495,27,0
10    6263002    rs3083330    CTGTA    C    365.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=48.4042;IndelType=D;MQ=56.88;MQ0=0;QD=45.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:407,21,0
10    6263135    rs947478    C    G    54.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
10    6263272    rs35364998    C    A    86.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=8.6;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    0/1:6,4:10:99:116,0,186
10    6263507    rs41291259    G    A    215.78    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.22;QD=14.39;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317350    GT:AD:DP:GQ:PL    0/1:7,8:15:99:246,0,218
10    6268422    rs943117    A    G    317.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=35.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487989    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:351,27,0
10    6368707    rs7087657    C    T    223.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL137145.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399868    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:257,21,0
10    6368721    rs7074209    G    T    114.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=12.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL137145.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399868    GT:AD:DP:GQ:PL    1/1:0,9:9:17.97:147,18,0
10    6368724    rs7074211    G    T    114.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=12.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL137145.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399868    GT:AD:DP:GQ:PL    1/1:0,9:9:17.97:147,18,0
10    6370416    rs75225148    G    A    86.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=14.49;ReadPosRankSum=0.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL137145.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399868    GT:AD:DP:GQ:PL    0/1:2,4:6:55.63:117,0,56
10    6392848    rs744254    G    A    1068.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.57;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL137145.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391437    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1101,81,0
10    6472891    rs11258747    G    T    435.37    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=28;Dels=0.0;FS=1.691;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.743;QD=15.55;ReadPosRankSum=-1.846;SNPEFF_AMINO_ACID_CHANGE=R491;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_6472772_6472900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539722    GT:AD:DP:GQ:PL    0/1:10,18:28:99:465,0,292
10    6472962    rs601150    T    G    484.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:518,39,0
10    6473041    rs34157770    C    A    99.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=14.27;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    0/1:3,4:7:93.78:130,0,94
10    6498723    rs11258943    G    A    489.46    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=1.218;DB;DP=31;Dels=0.0;FS=6.029;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.775;QD=15.79;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=I395;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_6498636_6498774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539722    GT:AD:DP:GQ:PL    0/1:12,19:31:99:519,0,387
10    6498799    rs2296123    C    G    277.25    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.147;QD=11.55;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    0/1:14,10:24:99:307,0,470
10    6505996    rs599305    T    G    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    6506472    rs41301101    C    T    238.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.437;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.33;MQ0=0;MQRankSum=-0.116;QD=8.51;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    0/1:16,12:28:99:268,0,464
10    6506481    rs35896644    G    A    183.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.89;MQ0=0;MQRankSum=-0.27;QD=8.75;ReadPosRankSum=-0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    0/1:12,8:21:99:214,0,438
10    6506566    rs41306820    G    C    30.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=15.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    1/1:0,2:2:6:61,6,0
10    6525667    .    T    A    177.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=17.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,133
10    6527344    rs661891    A    C    335.03    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.627;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.8325;MQ=59.36;MQ0=0;MQRankSum=0.017;QD=9.31;ReadPosRankSum=-0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    0/1:22,14:36:99:365,0,703
10    6527896    rs4748095    C    G    90.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=9.1;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    0/1:4,5:10:99:121,0,134
10    6531149    rs587198    C    T    123.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
10    6531196    rs7910038    G    C    113.79    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=7.11;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    0/1:9,7:16:99:144,0,266
10    6540089    rs653760    T    C    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
10    6556854    rs574521    C    T    994.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263125    GT:AD:DP:GQ:PL    1/1:0,27:27:78.23:1027,78,0
10    7214447    rs41302976    C    T    275.87    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.441;DB;DP=27;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=5.4576;MQ=59.14;MQ0=0;MQRankSum=-0.354;QD=10.22;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361972    GT:AD:DP:GQ:PL    0/1:12,14:27:99:306,0,321
10    7230524    rs2462712    G    T    146.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=8.11;ReadPosRankSum=1.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361972    GT:AD:DP:GQ:PL    0/1:12,6:18:99:176,0,422
10    7239386    rs2762604    C    T    51.32    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=3.95;ReadPosRankSum=2.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361972    GT:AD:DP:GQ:PL    0/1:10,3:13:81.31:81,0,325
10    7244242    rs2497443    C    T    197.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361972    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
10    7244675    rs2277225    G    A    35.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.1;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361972    GT:AD:DP:GQ:PL    0/1:3,2:5:65.50:65,0,110
10    7285632    rs2248474    A    G    1500.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=D336;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7285520_7285667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361972    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1533,117,0
10    7423960    rs2254756    T    C    422.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361972    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:455,36,0
10    7423984    rs2254760    G    T    154.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFMBT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361972    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:188,15,0
10    7604887    rs11255191    C    T    577.27    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.198;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=-0.485;QD=12.55;ReadPosRankSum=-2.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446830    GT:AD:DP:GQ:PL    0/1:25,21:46:99:607,0,888
10    7605067    rs3824658    C    T    4307.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=R717Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7605045_7605074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446830    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4307,325,0
10    7605077    rs71806144    TC    T    4555.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;FS=0.0;HRun=2;HaplotypeScore=1075.6201;IndelType=D;MQ=60.06;MQ0=0;QD=38.28;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_10_7601232_7605347;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    1/1:1,118:119:99:4556,352,0
10    7605101    rs10795551    A    G    2947.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.12;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=F707S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7605079_7605347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446830    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2981,235,0
10    7611614    rs41290273    C    T    264.38    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=24;Dels=0.0;FS=4.675;HRun=0;HaplotypeScore=1.581;MQ=59.03;MQ0=0;MQRankSum=-2.254;QD=11.02;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397145    GT:AD:DP:GQ:PL    0/1:14,10:24:99:294,0,460
10    7614918    rs11255194    T    C    165.07    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.101;QD=12.7;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    0/1:7,6:13:99:195,0,252
10    7614936    rs10737023    T    G    555.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:588,45,0
10    7614959    rs12254204    T    C    299.40    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.458;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.599;QD=14.26;ReadPosRankSum=-1.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    0/1:11,10:21:99:329,0,394
10    7615195    rs4747517    C    A    615.49    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=1.534;DB;DP=63;Dels=0.0;FS=13.755;HRun=0;HaplotypeScore=1.7331;MQ=59.27;MQ0=0;MQRankSum=-0.976;QD=9.77;ReadPosRankSum=-0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    0/1:40,23:63:99:645,0,1255
10    7615392    rs10905186    G    A    35.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.02;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    0/1:2,3:5:65.11:65,0,71
10    7618501    rs2275068    A    G    337.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.472;DB;DP=27;Dels=0.0;FS=4.374;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.157;QD=12.51;ReadPosRankSum=0.591;SNPEFF_AMINO_ACID_CHANGE=D413;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7618416_7618975;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446830    GT:AD:DP:GQ:PL    0/1:12,15:27:99:368,0,303
10    7618686    rs2275069    T    G    315.10    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DB;DP=19;Dels=0.0;FS=1.957;HRun=2;HaplotypeScore=0.8941;MQ=58.78;MQ0=0;MQRankSum=-1.288;QD=16.58;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=T352P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7618416_7618975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446830    GT:AD:DP:GQ:PL    0/1:9,10:19:99:345,0,225
10    7618993    rs10458802    G    A    160.46    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=19;Dels=0.0;FS=2.772;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.359;QD=8.45;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    0/1:11,7:19:99:190,0,409
10    7618997    rs10458803    G    A    130.88    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=16;Dels=0.0;FS=2.858;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.224;QD=8.18;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    0/1:10,6:16:99:161,0,372
10    7621771    rs17431370    A    G    717.96    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-0.37;QD=14.36;ReadPosRankSum=-1.17;SNPEFF_AMINO_ACID_CHANGE=C237;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7621718_7622027;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446830    GT:AD:DP:GQ:PL    0/1:24,26:50:99:748,0,689
10    7622009    rs41298373    G    A    253.77    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.611;QD=21.15;ReadPosRankSum=0.967;SNPEFF_AMINO_ACID_CHANGE=A158V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7621718_7622027;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446830    GT:AD:DP:GQ:PL    0/1:2,10:12:43.64:284,0,44
10    7622047    rs12256183    A    G    222.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=27.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:255,21,0
10    7658889    rs11812212    G    C    96.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:129,9,0
10    7682513    rs67757710    T    A    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
10    7683741    rs4420165    G    A    1328.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1361,102,0
10    7683873    rs41382649    A    T    3363.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3363,250,0
10    7697504    rs11255267    G    A    965.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256861    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:999,75,0
10    7745492    rs2298319    A    C    974.81    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=78;Dels=0.0;FS=7.372;HRun=1;HaplotypeScore=0.7887;MQ=59.7;MQ0=0;MQRankSum=0.142;QD=12.5;ReadPosRankSum=0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358415    GT:AD:DP:GQ:PL    0/1:45,33:78:99:1005,0,1342
10    7749183    rs73621253    C    T    368.61    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=0.062;DB;DP=38;Dels=0.0;FS=1.378;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.092;QD=9.7;ReadPosRankSum=0.708;SNPEFF_AMINO_ACID_CHANGE=S35L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7749164_7749196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429820    GT:AD:DP:GQ:PL    0/1:25,13:38:99:399,0,796
10    7759510    rs41290277    A    G    1561.50    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=109;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=2.4524;MQ=59.58;MQ0=0;MQRankSum=-0.312;QD=14.33;ReadPosRankSum=0.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473227    GT:AD:DP:GQ:PL    0/1:52,57:109:99:1591,0,1544
10    7759679    rs35076349    G    A    1306.59    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.983;DB;DP=139;Dels=0.0;FS=4.846;HRun=2;HaplotypeScore=1.864;MQ=59.5;MQ0=0;MQRankSum=-0.409;QD=9.4;ReadPosRankSum=-0.274;SNPEFF_AMINO_ACID_CHANGE=V161;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7759589_7759751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429820    GT:AD:DP:GQ:PL    0/1:84,55:139:99:1337,0,2656
10    7759865    rs7090433    A    G    65.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.13;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473227    GT:AD:DP:GQ:PL    0/1:5,3:8:95.04:95,0,168
10    7763010    rs2388323    G    C    220.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.893;QD=13.81;ReadPosRankSum=1.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480387    GT:AD:DP:GQ:PL    0/1:8,8:16:99:251,0,286
10    7763421    rs2277227    G    A    43.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480387    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
10    7763661    rs7075296    A    G    3046.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=N252S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_7763612_7763740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379587    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3079,226,0
10    7765556    rs41290287    T    C    426.10    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.046;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7023;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=11.52;ReadPosRankSum=0.665;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429820    GT:AD:DP:GQ:PL    0/1:22,15:37:99:456,0,583
10    7769604    rs2277226    A    G    586.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358415    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:619,48,0
10    7773976    rs7098319    A    G    1116.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.23;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358415    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1150,87,0
10    7774091    rs2298318    A    G    63.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.95;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358415    GT:AD:DP:GQ:PL    0/1:5,3:8:93.58:94,0,171
10    7774594    rs12247903    C    T    109.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.63;ReadPosRankSum=1.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477751    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,133
10    7776831    rs1926937    C    T    1101.35    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.111;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=59.72;MQ0=0;MQRankSum=0.037;QD=13.27;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477751    GT:AD:DP:GQ:PL    0/1:43,39:83:99:1131,0,1162
10    7780785    rs17362195    T    C    438.80    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.777;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.185;QD=24.38;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358415    GT:AD:DP:GQ:PL    0/1:3,15:18:73.37:469,0,73
10    7784924    rs3736964    C    A    486.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358415    GT:AD:DP:GQ:PL    1/1:0,14:14:42.10:519,42,0
10    7785017    rs3736965    T    C    1931.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=38.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358415    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1965,147,0
10    7788495    rs7912419    T    C    508.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358415    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:541,39,0
10    7797903    .    C    CAACT    1901.76    PASS    AC=2;AF=1.00;AN=2;DP=26;FS=0.0;HRun=0;HaplotypeScore=80.4266;IndelType=I;MQ=55.35;MQ0=0;QD=73.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543003    GT:AD:DP:GQ:PL    1/1:2,24:26:75.26:1944,75,0
10    7804308    rs1980856    C    T    444.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:478,36,0
10    7807864    rs3736969    C    T    144.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.668;QD=14.43;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,180
10    7808086    rs3736968    T    C    622.56    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.517;DB;DP=37;Dels=0.0;FS=1.631;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.924;QD=16.83;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    0/1:14,23:37:99:653,0,479
10    7811407    rs2296734    G    C    246.35    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=32;Dels=0.0;FS=2.669;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.305;QD=7.7;ReadPosRankSum=-0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    0/1:23,9:32:99:276,0,763
10    7820704    rs111726843    A    AAACAAC    1204.83    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=125.9024;IndelType=I;MQ=50.43;MQ0=0;MQRankSum=-2.524;QD=44.62;ReadPosRankSum=1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    0/1:14,12:27:99:1244,0,568
10    7821081    rs7095166    A    G    559.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    1/1:0,17:17:45.11:593,45,0
10    7821193    rs7098654    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    7821794    rs10905230    C    T    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
10    7822418    rs7898584    T    C    72.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
10    7829759    rs17553878    C    T    595.65    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.351;DB;DP=68;Dels=0.0;FS=1.185;HRun=0;HaplotypeScore=2.5625;MQ=60.0;MQ0=0;MQRankSum=-2.463;QD=8.76;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379562    GT:AD:DP:GQ:PL    0/1:44,24:68:99:626,0,1314
10    7837905    rs1244417    T    C    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335698    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
10    7838838    rs1244421    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462760    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
10    7846152    rs914609    T    C    2675.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460820    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2709,217,0
10    7866268    rs7070208    C    G    2200.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344293    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2234,160,0
10    7866557    rs1244471    T    C    714.17    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.414;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.343;QD=13.47;ReadPosRankSum=-0.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344293    GT:AD:DP:GQ:PL    0/1:27,26:53:99:744,0,869
10    8006798    rs4747647    A    G    1560.71    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=105;Dels=0.0;FS=6.357;HRun=0;HaplotypeScore=2.362;MQ=59.78;MQ0=0;MQRankSum=-1.501;QD=14.86;ReadPosRankSum=0.175;SNPEFF_AMINO_ACID_CHANGE=N442S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_8005883_8007705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344293    GT:AD:DP:GQ:PL    0/1:52,53:105:99:1591,0,1707
10    8007559    rs10795583    G    C    555.20    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=39;Dels=0.0;FS=4.378;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.269;QD=14.24;ReadPosRankSum=-1.463;SNPEFF_AMINO_ACID_CHANGE=V696L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_8005883_8007705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344293    GT:AD:DP:GQ:PL    0/1:16,23:39:99:585,0,501
10    8007560    rs1244229    T    C    516.43    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.763;DB;DP=39;Dels=0.0;FS=4.378;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.762;QD=13.24;ReadPosRankSum=-1.463;SNPEFF_AMINO_ACID_CHANGE=V696A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_8005883_8007705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344293    GT:AD:DP:GQ:PL    0/1:16,23:39:99:546,0,505
10    8055978    rs7073640    G    C    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.4;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344293    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
10    8093034    rs501764    G    T    409.43    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=0.139;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.157;QD=21.55;ReadPosRankSum=0.694;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346208    GT:AD:DP:GQ:PL    0/1:5,14:19:99:439,0,151
10    8100125    rs3824667    A    G    59.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=19.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481743    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:92,9,0
10    8111409    rs422628    C    T    1425.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6208;MQ=56.99;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GATA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346208    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1458,111,0
10    11047207    rs2773499    C    G    768.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.05;MQ0=0;QD=29.54;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379261    GT:AD:DP:GQ:PL    1/1:0,26:26:69.14:801,69,0
10    11290997    rs2653522    A    C    370.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315874    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:403,30,0
10    11299735    rs2277212    A    T    384.49    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.498;DB;DP=24;Dels=0.0;FS=1.851;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.025;QD=16.02;ReadPosRankSum=-0.146;SNPEFF_AMINO_ACID_CHANGE=V115;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11299701_11299835;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315874    GT:AD:DP:GQ:PL    0/1:10,14:24:99:414,0,302
10    11316909    rs2244576    G    C    1008.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315874    GT:AD:DP:GQ:PL    1/1:0,26:26:78.25:1041,78,0
10    11316987    rs2244573    G    A    1343.86    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=4.742;DB;DP=72;Dels=0.0;FS=2.621;HRun=0;HaplotypeScore=1.7552;MQ=59.36;MQ0=0;MQRankSum=0.471;QD=18.66;ReadPosRankSum=0.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315874    GT:AD:DP:GQ:PL    0/1:29,43:72:99:1374,0,628
10    11317257    rs2134361    T    C    285.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.34;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315874    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:318,27,0
10    11330525    rs2277214    G    A    296.19    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.508;DB;DP=23;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=-0.462;QD=12.88;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315874    GT:AD:DP:GQ:PL    0/1:12,11:23:99:326,0,308
10    11330548    rs2277215    G    A    197.98    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.13;MQ0=0;MQRankSum=0.312;QD=13.2;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315874    GT:AD:DP:GQ:PL    0/1:7,8:15:99:228,0,217
10    11330576    rs2277216    C    T    44.01    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.84;MQ0=0;MQRankSum=0.831;QD=3.39;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315874    GT:AD:DP:GQ:PL    0/1:8,5:13:74.01:74,0,215
10    11355993    rs11257056    G    A    575.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.81;MQ0=0;QD=33.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379256    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:608,48,0
10    11356093    rs5783207    T    TTTTG    4671.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=245.9251;IndelType=I;MQ=55.27;MQ0=0;QD=73.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379256    GT:AD:DP:GQ:PL    1/1:5,58:64:99:4672,181,0
10    11356160    rs2246449    C    T    1367.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.02;MQ0=0;QD=35.06;SNPEFF_AMINO_ACID_CHANGE=L144;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11356102_11356221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538632    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1400,105,0
10    11504313    rs2440082    C    T    285.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.73;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277575    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:319,24,0
10    11505175    rs3740204    A    G    1243.06    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=1.758;DB;DP=69;Dels=0.0;FS=3.547;HRun=2;HaplotypeScore=3.3056;MQ=59.67;MQ0=0;MQRankSum=1.336;QD=18.02;ReadPosRankSum=1.093;SNPEFF_AMINO_ACID_CHANGE=P584;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11502511_11505848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6NL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379237    GT:AD:DP:GQ:PL    0/1:28,41:69:99:1273,0,791
10    11532758    rs882206    C    A    117.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.264;QD=6.53;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277575    GT:AD:DP:GQ:PL    0/1:12,6:18:99:148,0,362
10    11574424    rs12250042    G    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379237    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    11784978    rs7076220    C    T    88.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
10    11789250    rs4750088    G    A    208.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:0,7:7:21.03:242,21,0
10    11789290    rs4750089    G    C    601.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:634,48,0
10    11789382    rs4750090    G    A    2142.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.63;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=A122T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11789348_11789469;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420401    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2176,160,0
10    11789405    rs4750091    G    A    2343.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=K129;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11789348_11789469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420401    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2376,175,0
10    11789511    rs4750092    C    G    2845.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2879,208,0
10    11789637    rs4750093    G    A    557.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=32.8;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:1,16:17:8.52:589,9,0
10    11791673    rs113825360    T    A    217.13    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.696;QD=16.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    0/1:5,8:13:99:247,0,156
10    11797436    rs7899215    T    C    1038.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.84;SNPEFF_AMINO_ACID_CHANGE=V140;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11797407_11797607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:0,36:36:84.27:1071,84,0
10    11797467    rs7910140    G    A    1070.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=54.14;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=A151T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11797407_11797607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1103,87,0
10    11797619    rs902892    C    G    292.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=26.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420401    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:326,27,0
10    11805339    rs17850531    C    T    523.06    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.046;DB;DP=34;Dels=0.0;FS=1.352;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.173;QD=15.38;ReadPosRankSum=0.139;SNPEFF_AMINO_ACID_CHANGE=I163;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11805223_11805350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422887    GT:AD:DP:GQ:PL    0/1:15,19:34:99:553,0,370
10    11805354    rs12258196    A    G    929.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=28.16;SNPEFF_AMINO_ACID_CHANGE=A241;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11805223_11806069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:0,33:33:75.22:962,75,0
10    11805357    rs10906011    G    A    984.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=29.85;SNPEFF_AMINO_ACID_CHANGE=S242;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_11805223_11806069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379215    GT:AD:DP:GQ:PL    1/1:0,33:33:78.25:1018,78,0
10    11893912    rs7079717    T    G    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277570    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
10    11893971    rs7079747    T    G    142.09    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=20.3;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277570    GT:AD:DP:GQ:PL    0/1:2,5:7:61.39:172,0,61
10    11973483    rs11257433    T    C    155.71    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=22.24;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359268    GT:AD:DP:GQ:PL    0/1:2,5:7:54.19:186,0,54
10    12046546    rs7079388    T    C    370.97    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=16.86;ReadPosRankSum=-2.204;SNPEFF_AMINO_ACID_CHANGE=N466S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12046529_12046726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313977    GT:AD:DP:GQ:PL    0/1:9,13:22:99:401,0,232
10    12068445    rs72777744    A    C    140.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.336;QD=14.08;ReadPosRankSum=1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313977    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,160
10    12068542    rs12415637    C    T    283.73    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.42;DB;DP=34;Dels=0.0;FS=6.245;HRun=2;HaplotypeScore=2.8621;MQ=56.52;MQ0=0;MQRankSum=1.101;QD=8.35;ReadPosRankSum=-0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313977    GT:AD:DP:GQ:PL    0/1:18,14:34:99:314,0,537
10    12070561    rs1279134    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313977    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    12111090    rs1279138    T    C    322.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=24.84;SNPEFF_AMINO_ACID_CHANGE=F20L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12110971_12111186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    1/1:0,13:13:27.09:356,27,0
10    12123363    rs1722446    T    A    198.49    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.239;DB;DP=22;Dels=0.04;FS=0.0;HRun=5;HaplotypeScore=2.5648;MQ=57.97;MQ0=0;MQRankSum=0.249;QD=8.63;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:12,10:22:99:228,0,406
10    12123667    rs1722445    A    C    472.37    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=2.639;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.635;QD=18.17;ReadPosRankSum=0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:9,16:26:99:502,0,199
10    12131218    rs3740016    C    T    524.87    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=2.42;DB;DP=28;Dels=0.0;FS=2.021;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=18.75;ReadPosRankSum=-1.021;SNPEFF_AMINO_ACID_CHANGE=N15;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12131174_12131254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415935    GT:AD:DP:GQ:PL    0/1:6,22:28:99:555,0,139
10    12135888    rs7086420    G    A    184.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.5;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437298    GT:AD:DP:GQ:PL    0/1:4,6:10:99:215,0,104
10    12140030    rs10906076    C    G    403.69    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.798;DB;DP=34;Dels=0.0;FS=3.11;HRun=0;HaplotypeScore=1.9893;MQ=60.0;MQ0=0;MQRankSum=0.243;QD=11.87;ReadPosRankSum=0.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415935    GT:AD:DP:GQ:PL    0/1:19,15:34:99:434,0,606
10    12142286    rs57815181    G    GTTTTTTTTTTTT    5951.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;FS=0.0;HRun=14;HaplotypeScore=1471.4541;IndelType=I;MQ=45.48;MQ0=0;QD=51.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465617    GT:AD:DP:GQ:PL    1/1:82,20:116:99:5952,203,0
10    12142538    rs145697033    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465617    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    12142861    rs1701488    C    T    254.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465617    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
10    12143105    rs2062988    C    G    777.61    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=4.074;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8773;MQ=59.7;MQ0=0;MQRankSum=0.128;QD=10.23;ReadPosRankSum=2.068;SNPEFF_AMINO_ACID_CHANGE=I607M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12143041_12143180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:47,29:76:99:808,0,1301
10    12143320    rs73577257    G    A    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465617    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
10    12148119    rs72779649    A    C    216.93    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;MQRankSum=0.817;QD=16.69;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:5,8:13:99:247,0,132
10    12148259    rs1701472    A    C    1506.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=P637;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12148245_12148395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1539,120,0
10    12148286    rs1615510    T    C    1648.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=F646;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12148245_12148395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1682,132,0
10    12148637    rs1722460    T    C    84.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
10    12149939    rs1722462    C    T    457.22    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.59;DB;DP=34;Dels=0.0;FS=1.363;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.283;QD=13.45;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=I693;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12149908_12150014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:15,19:34:99:487,0,460
10    12154833    rs1701470    C    T    555.87    PASS    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=27;Dels=0.0;FS=1.983;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=-0.249;QD=20.59;ReadPosRankSum=0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:7,20:27:99:586,0,219
10    12159647    rs2399771    A    G    2044.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.28;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2078,159,0
10    12159668    rs12416681    G    A    1005.46    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.058;DB;DP=73;Dels=0.0;FS=0.881;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=0.072;QD=13.77;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1035,0,1041
10    12160572    rs11257542    A    G    178.49    MQFilter40    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.171;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=35.88;MQ0=0;MQRankSum=-0.116;QD=7.14;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:14,11:25:99:208,0,391
10    12160623    rs11257545    C    T    797.82    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=2.809;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.962;MQ=49.73;MQ0=0;MQRankSum=-1.894;QD=15.05;ReadPosRankSum=0.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:26,27:53:99:828,0,854
10    12160632    rs112318056    T    C    2198.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9553;MQ=51.64;MQ0=0;MQRankSum=1.681;QD=34.35;ReadPosRankSum=-0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    1/1:2,60:64:99:2231,148,0
10    12161073    rs7914993    A    G    35.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.77;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHTKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263035    GT:AD:DP:GQ:PL    0/1:2,2:4:65.07:65,0,72
10    12178339    rs11257558    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC61A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298428    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    12191933    rs10466280    C    T    525.66    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=3.142;DB;DP=41;Dels=0.0;FS=1.235;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=2.519;QD=12.82;ReadPosRankSum=0.108;SNPEFF_AMINO_ACID_CHANGE=A123;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12191851_12191960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC61A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379033    GT:AD:DP:GQ:PL    0/1:21,20:41:99:556,0,572
10    12195881    rs2895501    G    A    472.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.263;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3503;MQ=58.55;MQ0=0;MQRankSum=-0.923;QD=14.76;ReadPosRankSum=0.886;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC61A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379017    GT:AD:DP:GQ:PL    0/1:16,16:32:99:502,0,574
10    12198019    rs3758376    G    A    433.68    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.399;QD=19.71;ReadPosRankSum=-0.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC61A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379017    GT:AD:DP:GQ:PL    0/1:8,14:22:99:464,0,259
10    12200125    rs4750175    C    T    347.43    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.077;QD=15.11;ReadPosRankSum=0.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC61A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379017    GT:AD:DP:GQ:PL    0/1:12,11:23:99:377,0,403
10    12202866    rs10906092    A    T    434.15    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=23;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=18.88;ReadPosRankSum=-1.809;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491614    GT:AD:DP:GQ:PL    0/1:8,15:23:99:464,0,266
10    12203197    rs2399784    C    G    291.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491614    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
10    12203321    rs1573986    G    A    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491614    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    12209752    rs6686    T    C    2148.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=A203;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12207324_12209810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000491614    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2182,172,0
10    12209936    rs148918026    GT    G    69.27    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=13;FS=0.0;HRun=8;HaplotypeScore=29.9972;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=0.135;QD=5.33;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378927    GT:AD:DP:GQ:PL    0/1:8,5:13:99:108,0,218
10    12211970    rs11257576    T    G    457.66    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.298;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=14.76;ReadPosRankSum=0.655;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378927    GT:AD:DP:GQ:PL    0/1:14,17:31:99:488,0,486
10    12215870    rs35088067    CT    C    393.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DB;DP=37;FS=0.0;HRun=13;HaplotypeScore=153.0519;IndelType=D;MQ=60.08;MQ0=0;MQRankSum=-0.914;QD=10.62;ReadPosRankSum=2.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444732    GT:AD:DP:GQ:PL    1/1:11,23:37:17.89:435,18,0
10    12227067    rs2140660    C    G    384.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378927    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:417,30,0
10    12228298    rs2272207    C    T    991.35    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=3.991;DB;DP=78;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.9933;MQ=59.7;MQ0=0;MQRankSum=-2.199;QD=12.71;ReadPosRankSum=1.053;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_12228228_12228331;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378927    GT:AD:DP:GQ:PL    0/1:43,35:78:99:1021,0,1101
10    12240640    rs11257591    G    C    483.41    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.603;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.09;QD=14.65;ReadPosRankSum=1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281141    GT:AD:DP:GQ:PL    0/1:17,16:33:99:513,0,561
10    12240691    rs150891932    GT    G    411.90    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=4.823;DB;DP=61;FS=0.0;HRun=10;HaplotypeScore=218.9457;IndelType=D;MQ=59.75;MQ0=0;MQRankSum=0.45;QD=6.75;ReadPosRankSum=0.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281141    GT:AD:DP:GQ:PL    0/1:37,24:61:99:451,0,951
10    12252217    rs2271804    G    A    316.52    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=17.58;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281141    GT:AD:DP:GQ:PL    0/1:8,10:18:99:347,0,261
10    12288302    rs36042706    A    G    905.39    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.746;DB;DP=52;Dels=0.0;FS=1.352;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.357;QD=17.41;ReadPosRankSum=-0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281141    GT:AD:DP:GQ:PL    0/1:20,32:52:99:935,0,642
10    12292286    rs12779647    C    G    381.83    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.479;DB;DP=38;Dels=0.0;FS=2.887;HRun=0;HaplotypeScore=1.9955;MQ=58.78;MQ0=0;MQRankSum=-0.541;QD=10.05;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281141    GT:AD:DP:GQ:PL    0/1:22,15:38:99:412,0,687
10    12292344    rs10951    A    G    311.82    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.068;DB;DP=39;Dels=0.0;FS=11.566;HRun=0;HaplotypeScore=0.8941;MQ=59.41;MQ0=0;MQRankSum=2.103;QD=8.0;ReadPosRankSum=-0.539;SNPEFF_AMINO_ACID_CHANGE=V249;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12292315_12292588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC123;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455773    GT:AD:DP:GQ:PL    0/1:26,12:39:99:342,0,751
10    12292454    rs1051055    A    G    472.19    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.803;DB;DP=33;Dels=0.0;FS=12.499;HRun=0;HaplotypeScore=0.9947;MQ=59.3;MQ0=0;MQRankSum=0.929;QD=14.31;ReadPosRankSum=-0.565;SNPEFF_AMINO_ACID_CHANGE=H286R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12292315_12292588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC123;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455773    GT:AD:DP:GQ:PL    0/1:14,19:33:99:502,0,410
10    12292636    rs10795944    A    T    116.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=8.34;ReadPosRankSum=-0.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281141    GT:AD:DP:GQ:PL    0/1:8,6:14:99:147,0,250
10    12595037    rs2815629    G    C    78.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
10    12595147    rs2895524    C    T    714.56    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.127;DB;DP=59;Dels=0.0;FS=4.407;HRun=2;HaplotypeScore=0.7887;MQ=59.61;MQ0=0;MQRankSum=0.768;QD=12.11;ReadPosRankSum=-1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    0/1:32,27:59:99:745,0,1155
10    12595443    rs1077744    C    T    34.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.83;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    0/1:3,3:6:64.97:65,0,88
10    12803203    rs192852345    A    G    81.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.36;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:111,0,30
10    12856057    rs10795984    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    12866356    rs2482023    A    C    556.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:589,45,0
10    12867598    rs1757051    C    G    3859.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8661;MQ=59.21;MQ0=0;QD=32.99;SNPEFF_AMINO_ACID_CHANGE=V316;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12867572_12868142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    1/1:0,116:117:99:3859,292,0
10    12870642    rs72066238    G    GA    162.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=100.8053;IndelType=I;MQ=37.32;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    1/1:4,6:10:21.03:204,21,0
10    12870659    rs72029058    G    GCC    678.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=98.1187;IndelType=I;MQ=50.55;MQ0=0;QD=42.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    1/1:1,14:16:45.15:721,45,0
10    12870714    rs2482075    A    G    702.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=54.12;MQ0=0;QD=24.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378845    GT:AD:DP:GQ:PL    1/1:0,28:29:66.13:735,66,0
10    12940377    rs10752280    T    C    992.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.69;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378825    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1025,75,0
10    12940455    rs10906249    A    G    1169.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.85;SNPEFF_AMINO_ACID_CHANGE=N133;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_12938627_12940679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378839    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1203,105,0
10    13152504    rs72385020    GT    G    258.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=12;HaplotypeScore=71.8819;IndelType=D;MQ=60.63;MQ0=0;QD=17.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487935    GT:AD:DP:GQ:PL    1/1:1,14:15:38.82:301,39,0
10    13152666    rs7921853    T    G    128.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487935    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
10    13158262    rs2244380    C    T    686.78    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=52;Dels=0.0;FS=4.058;HRun=4;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=1.441;QD=13.21;ReadPosRankSum=0.631;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263036    GT:AD:DP:GQ:PL    0/1:25,27:52:99:717,0,758
10    13166076    rs523747    A    G    1757.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=K316E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13165995_13166110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378752    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1790,138,0
10    13167860    rs676302    G    T    110.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.421;QD=13.78;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263036    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,104
10    13199089    rs11258224    G    A    409.17    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.889;DB;DP=40;Dels=0.0;FS=1.222;HRun=4;HaplotypeScore=0.0;MQ=58.35;MQ0=0;MQRankSum=-0.068;QD=10.23;ReadPosRankSum=0.612;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361282    GT:AD:DP:GQ:PL    0/1:22,18:40:99:439,0,699
10    13206233    rs7090944    A    T    279.22    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.641;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.301;QD=11.17;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361282    GT:AD:DP:GQ:PL    0/1:14,11:25:99:309,0,414
10    13212884    rs2147279    C    T    1587.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361282    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1621,120,0
10    13214160    rs7073480    T    C    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361282    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:121,9,0
10    13214812    rs6602637    A    G    1056.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.53;MQ0=0;QD=35.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479669    GT:AD:DP:GQ:PL    1/1:0,30:30:81.24:1090,81,0
10    13214878    rs113007927    G    GAGAA    417.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=81.1471;IndelType=I;MQ=50.96;MQ0=0;QD=37.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479669    GT:AD:DP:GQ:PL    1/1:5,6:11:18.06:460,18,0
10    13224886    rs3765520    G    T    491.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361282    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:524,39,0
10    13225119    rs11258235    G    A    1237.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361282    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1270,99,0
10    13233471    rs7916762    C    T    654.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361282    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:687,51,0
10    13237015    rs10796036    G    A    1145.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361282    GT:AD:DP:GQ:PL    1/1:0,30:31:87.27:1179,87,0
10    13246062    rs2277220    A    C    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481292    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,104
10    13246439    rs111543130    C    G    374.64    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=36;Dels=0.0;FS=3.003;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.052;QD=10.41;ReadPosRankSum=0.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481292    GT:AD:DP:GQ:PL    0/1:21,15:36:99:405,0,686
10    13271834    rs4750320    G    A    219.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=15.65;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378681    GT:AD:DP:GQ:PL    0/1:7,7:14:99:249,0,170
10    13275437    rs41291315    A    G    345.77    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.299;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=58.55;MQ0=0;MQRankSum=-0.502;QD=11.92;ReadPosRankSum=-1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378681    GT:AD:DP:GQ:PL    0/1:14,15:29:99:376,0,495
10    13275514    rs4750327    A    G    1723.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6483;MQ=58.47;MQ0=0;QD=29.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378681    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1756,138,0
10    13275553    rs3829925    T    G    933.16    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.337;DB;DP=75;Dels=0.0;FS=0.912;HRun=2;HaplotypeScore=2.1992;MQ=58.7;MQ0=0;MQRankSum=0.595;QD=12.44;ReadPosRankSum=-0.516;SNPEFF_AMINO_ACID_CHANGE=R69;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13275538_13275633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCMA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378681    GT:AD:DP:GQ:PL    0/1:42,33:75:99:963,0,1188
10    13275676    rs3829926    T    C    810.57    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.34;MQ0=0;MQRankSum=-0.684;QD=11.58;ReadPosRankSum=-0.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378681    GT:AD:DP:GQ:PL    0/1:39,31:70:99:841,0,1192
10    13275691    rs10796042    G    T    984.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.79;DB;DP=68;Dels=0.0;FS=0.95;HRun=0;HaplotypeScore=0.5784;MQ=59.66;MQ0=0;MQRankSum=-2.349;QD=14.47;ReadPosRankSum=-1.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378681    GT:AD:DP:GQ:PL    0/1:34,34:68:99:1014,0,963
10    13276179    rs942418    A    G    158.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7748;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378681    GT:AD:DP:GQ:PL    1/1:0,9:9:18.03:191,18,0
10    13320236    rs11133    C    T    215.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.103;QD=13.46;ReadPosRankSum=1.208;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263038    GT:AD:DP:GQ:PL    0/1:8,8:16:99:245,0,290
10    13320411    rs825625    A    T    345.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263038    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:379,30,0
10    13320555    rs12411977    T    C    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263038    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:68,0,33
10    13325946    rs648173    C    T    985.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.066;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.832;MQ=59.28;MQ0=0;MQRankSum=0.433;QD=15.41;ReadPosRankSum=1.574;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479604    GT:AD:DP:GQ:PL    0/1:32,32:64:99:1016,0,1034
10    13330402    rs473407    T    C    365.58    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=27;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=13.54;ReadPosRankSum=-1.554;SNPEFF_AMINO_ACID_CHANGE=T112;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13330360_13330541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396913    GT:AD:DP:GQ:PL    0/1:11,16:27:99:396,0,320
10    13334058    rs1408364    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463730    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    13337588    rs1747682    G    A    3343.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5942;MQ=59.55;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=N32;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13337496_13337606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396920    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3343,241,0
10    13340236    rs28938169    G    A    463.01    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.697;QD=12.18;ReadPosRankSum=0.951;SNPEFF_AMINO_ACID_CHANGE=P10S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13340187_13340241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396920    GT:AD:DP:GQ:PL    0/1:21,17:38:99:493,0,509
10    13340293    rs7916926    A    G    197.03    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=12.31;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263038    GT:AD:DP:GQ:PL    0/1:9,7:16:99:227,0,276
10    13341378    rs3802586    C    T    312.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.162;DB;DP=28;Dels=0.0;FS=1.606;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.209;QD=11.17;ReadPosRankSum=0.812;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263038    GT:AD:DP:GQ:PL    0/1:16,12:28:99:343,0,480
10    13341836    rs511959    G    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263038    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    13341900    rs512109    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263038    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
10    13344221    rs825613    A    C    79.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263038    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
10    13361421    rs10906347    C    T    729.09    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.926;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.364;QD=13.5;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319684    GT:AD:DP:GQ:PL    0/1:29,25:54:99:759,0,975
10    13370315    rs3740211    C    T    433.61    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.538;DB;DP=42;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=1.9523;MQ=60.0;MQ0=0;MQRankSum=-0.345;QD=10.32;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319684    GT:AD:DP:GQ:PL    0/1:25,17:42:99:464,0,863
10    13375906    rs10752297    T    C    558.80    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.963;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.23;MQ0=0;MQRankSum=0.46;QD=18.63;ReadPosRankSum=0.042;SNPEFF_AMINO_ACID_CHANGE=T157;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13375817_13375971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPHS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319684    GT:AD:DP:GQ:PL    0/1:13,17:30:99:589,0,393
10    13378181    rs2275129    C    G    277.65    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.785;DB;DP=23;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.508;QD=12.07;ReadPosRankSum=0.892;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494329    GT:AD:DP:GQ:PL    0/1:12,11:23:99:308,0,390
10    13378445    rs2275128    A    G    69.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.51;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494329    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,107
10    13481427    rs12415754    T    A    433.10    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.036;DB;DP=32;Dels=0.0;FS=3.256;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=13.53;ReadPosRankSum=-0.85;SNPEFF_AMINO_ACID_CHANGE=S384;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13480637_13481497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341083    GT:AD:DP:GQ:PL    0/1:17,15:32:99:463,0,530
10    13481530    rs12573063    T    C    209.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=14.99;ReadPosRankSum=1.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378605    GT:AD:DP:GQ:PL    0/1:6,8:14:99:240,0,205
10    13489201    rs11408564    A    AT    130.04    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=31.5784;IndelType=I;MQ=61.78;MQ0=0;MQRankSum=0.244;QD=10.84;ReadPosRankSum=-2.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341083    GT:AD:DP:GQ:PL    0/1:7,5:12:99:169,0,237
10    13494396    rs72553376    TAA    T    498.12    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=4.113;DB;DP=24;FS=0.0;HRun=2;HaplotypeScore=73.6437;IndelType=D;MQ=61.78;MQ0=0;MQRankSum=0.232;QD=20.75;ReadPosRankSum=-0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341083    GT:AD:DP:GQ:PL    0/1:11,13:24:99:537,0,575
10    13494594    rs2277222    T    C    1507.20    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.366;DB;DP=106;Dels=0.0;FS=4.007;HRun=0;HaplotypeScore=0.8941;MQ=59.78;MQ0=0;MQRankSum=0.873;QD=14.22;ReadPosRankSum=-0.272;SNPEFF_AMINO_ACID_CHANGE=V324;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13494539_13494658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341083    GT:AD:DP:GQ:PL    0/1:51,55:106:99:1537,0,1564
10    13522661    rs10906389    G    A    76.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341083    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
10    13534526    rs12779776    T    C    905.13    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=3.41;DB;DP=74;Dels=0.0;FS=13.852;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.39;QD=12.23;ReadPosRankSum=-0.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466271    GT:AD:DP:GQ:PL    0/1:39,35:74:99:935,0,1288
10    13534554    rs2251467    T    C    1365.10    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DB;DP=107;Dels=0.0;FS=11.391;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=-0.73;QD=12.76;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466271    GT:AD:DP:GQ:PL    0/1:57,50:107:99:1395,0,1851
10    13534851    rs2251555    A    G    629.61    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=49;Dels=0.0;FS=18.195;HRun=2;HaplotypeScore=1.979;MQ=60.0;MQ0=0;MQRankSum=-0.591;QD=12.85;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=P147;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_13534611_13534876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341083    GT:AD:DP:GQ:PL    0/1:23,26:49:99:660,0,800
10    13541724    rs113234105    T    TAAAAC    1952.26    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.307;DB;DP=60;FS=12.816;HRun=0;HaplotypeScore=253.6284;IndelType=I;MQ=58.07;MQ0=0;MQRankSum=0.298;QD=32.54;ReadPosRankSum=-1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BEND7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341083    GT:AD:DP:GQ:PL    0/1:34,22:60:99:1991,0,2034
10    13633835    rs10906419    A    G    568.78    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=53;Dels=0.0;FS=1.096;HRun=1;HaplotypeScore=2.496;MQ=58.32;MQ0=0;MQRankSum=1.918;QD=10.73;ReadPosRankSum=0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298451    GT:AD:DP:GQ:PL    0/1:33,20:53:99:599,0,1032
10    13639822    rs61835267    C    T    150.19    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.75;MQ0=0;MQRankSum=-0.922;QD=9.39;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298451    GT:AD:DP:GQ:PL    0/1:10,6:16:99:180,0,306
10    13642086    rs1409322    G    A    117.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298451    GT:AD:DP:GQ:PL    0/1:2,4:6:55.18:147,0,55
10    13651849    rs3814661    C    T    67.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=11.24;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298451    GT:AD:DP:GQ:PL    0/1:2,4:6:63.73:97,0,64
10    13653390    rs7090752    A    G    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298451    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
10    13653490    rs2478121    C    A    162.17    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=27.03;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298451    GT:AD:DP:GQ:PL    0/1:1,5:6:23.70:192,0,24
10    13658335    rs2253308    G    A    474.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.416;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=58.5;MQ0=0;MQRankSum=1.741;QD=16.94;ReadPosRankSum=-1.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320054    GT:AD:DP:GQ:PL    0/1:12,16:28:99:504,0,407
10    13693883    rs11258499    C    T    594.29    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=42;Dels=0.0;FS=3.377;HRun=0;HaplotypeScore=1.7046;MQ=59.45;MQ0=0;MQRankSum=-1.398;QD=14.15;ReadPosRankSum=-2.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378503    GT:AD:DP:GQ:PL    0/1:22,20:42:99:624,0,734
10    13702668    rs10796105    T    C    92.17    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=18.43;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357447    GT:AD:DP:GQ:PL    0/1:1,4:5:25.61:122,0,26
10    13705298    rs10796108    G    T    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:75,0,34
10    13712679    rs74535305    A    G    151.13    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=16.79;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:4,5:9:99:181,0,139
10    13717076    rs3814663    C    G    673.15    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=0.889;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.725;QD=18.7;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:13,23:36:99:703,0,428
10    13735587    rs737376    G    A    129.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342409    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
10    13735603    rs943090    G    C    123.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342409    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
10    13743251    rs2296598    A    T    494.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.843;DB;DP=42;Dels=0.0;FS=7.663;HRun=1;HaplotypeScore=1.7356;MQ=60.0;MQ0=0;MQRankSum=0.724;QD=11.77;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:24,18:42:99:524,0,679
10    13743646    rs1541005    G    C    155.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:188,15,0
10    13782110    rs11258567    A    C    355.82    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.913;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.387;QD=9.88;ReadPosRankSum=0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:22,14:36:99:386,0,751
10    13782124    rs10906462    A    G    1241.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1275,108,0
10    13782605    rs6602679    G    A    369.52    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.018;QD=12.32;ReadPosRankSum=-0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:16,14:30:99:400,0,494
10    13803866    rs17628770    A    G    149.45    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.35;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:2,5:7:62.39:179,0,62
10    13838329    rs3740123    G    A    66.37    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.159;QD=7.37;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:4,5:9:96.36:96,0,118
10    13838340    rs3740122    T    G    204.79    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.33;MQ0=0;MQRankSum=-0.386;QD=14.63;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:6,8:14:99:235,0,190
10    13838604    rs3740121    A    G    1112.20    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.648;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.644;QD=14.63;ReadPosRankSum=-1.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264546    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1142,0,1110
10    14013954    rs4750440    C    A    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342409    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
10    14563097    rs3780915    A    G    1041.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9117;MQ=59.2;MQ0=0;QD=35.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM107B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378461    GT:AD:DP:GQ:PL    1/1:0,29:29:87.26:1075,87,0
10    14572644    rs7922221    G    A    70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=7.0;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM107B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495292    GT:AD:DP:GQ:PL    0/1:5,5:10:99:100,0,149
10    14976414    rs7076862    G    A    1556.74    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.188;DB;DP=156;Dels=0.0;FS=1.489;HRun=1;HaplotypeScore=3.5221;MQ=52.71;MQ0=1;MQRankSum=0.237;QD=9.98;ReadPosRankSum=-0.707;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_14976379_14976519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLRE1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357717    GT:AD:DP:GQ:PL    0/1:87,69:156:99:1587,0,2389
10    15008493    rs4750568    A    C    423.52    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.92;MQ0=0;MQRankSum=-1.175;QD=10.86;ReadPosRankSum=0.807;SNPEFF_AMINO_ACID_CHANGE=K9T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_15008438_15008605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378240    GT:AD:DP:GQ:PL    0/1:22,17:39:99:454,0,777
10    15014369    rs1935401    C    A    176.85    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=16.08;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378240    GT:AD:DP:GQ:PL    0/1:3,8:11:94.80:207,0,95
10    15014418    rs1935400    C    G    276.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.236;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.442;QD=15.36;ReadPosRankSum=0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378240    GT:AD:DP:GQ:PL    0/1:9,9:18:99:306,0,306
10    15014440    rs1935399    A    G    476.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.912;DB;DP=25;Dels=0.0;FS=4.624;HRun=0;HaplotypeScore=0.5784;MQ=58.13;MQ0=0;MQRankSum=0.638;QD=19.07;ReadPosRankSum=-2.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378240    GT:AD:DP:GQ:PL    0/1:10,15:25:99:507,0,307
10    15014698    rs4418687    C    T    142.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=11.9;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496225    GT:AD:DP:GQ:PL    0/1:6,6:12:99:173,0,206
10    15014702    rs4295952    A    G    142.69    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.85;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496225    GT:AD:DP:GQ:PL    0/1:4,5:9:99:173,0,132
10    15029264    rs7918583    A    G    1165.82    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.44;DB;DP=105;Dels=0.01;FS=5.237;HRun=0;HaplotypeScore=3.4222;MQ=53.06;MQ0=1;MQRankSum=-3.898;QD=11.0;ReadPosRankSum=-0.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467536    GT:AD:DP:GQ:PL    0/1:53,52:105:99:1196,0,1477
10    15029315    rs11259420    A    C    1138.53    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.642;DB;DP=96;Dels=0.0;FS=0.798;HRun=0;HaplotypeScore=0.734;MQ=51.04;MQ0=1;MQRankSum=-5.445;QD=11.86;ReadPosRankSum=0.809;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467536    GT:AD:DP:GQ:PL    0/1:50,46:96:99:1169,0,1476
10    15029489    rs7901784    G    A    360.78    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=48;Dels=0.0;FS=5.073;HRun=0;HaplotypeScore=0.0;MQ=46.05;MQ0=4;MQRankSum=-4.549;QD=7.52;ReadPosRankSum=-0.498;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467536    GT:AD:DP:GQ:PL    0/1:25,23:48:99:391,0,826
10    15031402    rs11818171    C    A    221.51    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=19;Dels=0.0;FS=7.701;HRun=0;HaplotypeScore=0.0;MQ=54.99;MQ0=0;MQRankSum=0.289;QD=11.66;ReadPosRankSum=-0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467536    GT:AD:DP:GQ:PL    0/1:11,8:19:99:251,0,374
10    15041392    rs10752346    T    C    52.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.573;QD=5.88;ReadPosRankSum=-0.573;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-271M1.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502808    GT:AD:DP:GQ:PL    0/1:6,3:9:82.94:83,0,218
10    15041595    rs111698469    G    GA    203.42    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=25;FS=0.0;HRun=10;HaplotypeScore=93.8194;IndelType=I;MQ=52.54;MQ0=0;MQRankSum=-1.581;QD=7.53;ReadPosRankSum=0.527;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-271M1.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502808    GT:AD:DP:GQ:PL    0/1:18,9:25:99:242,0,294
10    15041908    rs6602796    C    A    1706.64    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=7.355;DB;DP=112;Dels=0.0;FS=22.873;HRun=1;HaplotypeScore=0.7887;MQ=50.22;MQ0=1;MQRankSum=-3.42;QD=15.24;ReadPosRankSum=-0.563;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-271M1.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502808    GT:AD:DP:GQ:PL    0/1:50,61:112:99:1737,0,1316
10    15091970    rs74993516    T    C    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378217    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:69,0,31
10    15106441    rs10906818    A    G    635.80    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=34;Dels=0.0;FS=3.217;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.258;QD=18.7;ReadPosRankSum=-1.252;SNPEFF_AMINO_ACID_CHANGE=L114;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_15106402_15106501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLAH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378228    GT:AD:DP:GQ:PL    0/1:11,23:34:99:666,0,367
10    15154974    rs7072269    A    G    961.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.28;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378143    GT:AD:DP:GQ:PL    1/1:0,31:32:81.24:995,81,0
10    15257750    rs9423931    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    15262784    rs6602827    A    G    580.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=27.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378114    GT:AD:DP:GQ:PL    1/1:0,21:21:57.08:613,57,0
10    15296572    rs3824620    A    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378114    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    15573050    rs1041135    A    G    2346.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=V979A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_15573049_15573150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538044    GT:AD:DP:GQ:PL    1/1:0,71:72:99:2379,172,0
10    15590372    rs9333229    G    T    428.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:461,33,0
10    15614029    rs9333209    G    T    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.86;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,114
10    15649698    rs9333269    T    G    6169.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.417;DB;DP=191;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.2525;MQ=59.64;MQ0=0;MQRankSum=1.176;QD=32.3;ReadPosRankSum=-0.491;SNPEFF_AMINO_ACID_CHANGE=Q566P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_15649676_15649830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538044    GT:AD:DP:GQ:PL    1/1:1,190:191:99:6169,438,0
10    15650401    rs71903964    T    TAC    449.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=89.4008;IndelType=I;MQ=61.01;MQ0=0;QD=22.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468882    GT:AD:DP:GQ:PL    1/1:10,10:20:33.09:491,33,0
10    15655398    rs7075987    A    G    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
10    15658596    rs7099530    G    A    806.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:840,60,0
10    15658659    rs7083600    T    C    438.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,14:14:42.10:471,42,0
10    15685983    rs4748191    A    T    478.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:512,39,0
10    15700803    rs7097592    A    G    75.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:107,9,0
10    15700827    rs7097720    A    G    123.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
10    15720962    rs2275615    G    A    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
10    15729923    rs1954181    C    T    1626.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1660,120,0
10    15760670    rs2298031    C    G    743.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.033;DB;DP=46;Dels=0.0;FS=9.645;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.308;QD=16.15;ReadPosRankSum=-0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    0/1:23,23:46:99:773,0,718
10    15761527    rs9333070    T    C    111.75    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=18.63;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378076    GT:AD:DP:GQ:PL    0/1:1,5:6:24.96:142,0,25
10    15858620    rs11253656    A    T    78.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM188A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277632    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
10    15902303    rs2297882    A    G    128.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM188A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477891    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
10    16736977    rs3740173    T    C    489.21    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.223;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.33;MQ0=0;MQRankSum=0.171;QD=11.93;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345264    GT:AD:DP:GQ:PL    0/1:23,18:41:99:519,0,734
10    16737165    rs111962352    G    GAA    504.54    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.293;DB;DP=25;FS=2.754;HRun=0;HaplotypeScore=249.283;IndelType=I;MQ=50.11;MQ0=0;MQRankSum=1.161;QD=20.18;ReadPosRankSum=3.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345264    GT:AD:DP:GQ:PL    0/1:8,16:25:99:544,0,134
10    16737289    rs3740172    A    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345264    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
10    16794623    rs10445    C    T    1820.61    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.876;DB;DP=156;Dels=0.0;FS=3.926;HRun=0;HaplotypeScore=1.787;MQ=59.85;MQ0=0;MQRankSum=0.209;QD=11.67;ReadPosRankSum=-0.297;SNPEFF_AMINO_ACID_CHANGE=S118;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_16794538_16794652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSU1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377911    GT:AD:DP:GQ:PL    0/1:93,63:156:99:1851,0,2605
10    16796919    rs1049632    C    A    1741.15    PASS    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=3.997;DB;DP=138;Dels=0.0;FS=4.284;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.041;QD=12.62;ReadPosRankSum=-1.502;SNPEFF_AMINO_ACID_CHANGE=T117;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_16796870_16796988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSU1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345264    GT:AD:DP:GQ:PL    0/1:79,59:138:99:1771,0,2321
10    16797033    rs7910261    A    G    1603.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.701;DB;DP=117;Dels=0.0;FS=2.77;HRun=0;HaplotypeScore=2.101;MQ=59.84;MQ0=0;MQRankSum=-0.797;QD=13.7;ReadPosRankSum=0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345264    GT:AD:DP:GQ:PL    0/1:63,54:117:99:1633,0,1801
10    16806545    rs3765595    A    C    816.44    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.873;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5769;MQ=58.8;MQ0=0;MQRankSum=1.248;QD=13.17;ReadPosRankSum=-1.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345264    GT:AD:DP:GQ:PL    0/1:30,31:62:99:846,0,954
10    16823813    rs10904806    T    C    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345264    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
10    16877391    rs703061    T    C    30.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
10    16878204    rs703062    T    C    751.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:785,63,0
10    16882518    rs703064    T    C    463.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.61;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=T122;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_16882329_16882534;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545090    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:496,42,0
10    16911556    rs59702069    TG    T    463.65    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=5.191;DB;DP=53;FS=0.0;HRun=10;HaplotypeScore=311.2765;IndelType=D;MQ=58.24;MQ0=0;MQRankSum=-1.119;QD=8.75;ReadPosRankSum=0.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:35,18:53:99:503,0,588
10    16911566    rs71472855    GC    G    449.16    PASS    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=5.69;DB;DP=68;FS=6.598;HRun=1;HaplotypeScore=406.1274;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=0.312;QD=6.61;ReadPosRankSum=2.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:61,7:68:99:488,0,853
10    16911605    rs703075    C    A    1490.87    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=108;Dels=0.0;FS=2.118;HRun=3;HaplotypeScore=3.5167;MQ=59.14;MQ0=0;MQRankSum=-0.623;QD=13.8;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:51,55:108:99:1521,0,1451
10    16930279    rs780847    A    T    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.25;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,110
10    16943371    rs2796835    G    C    2612.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.42;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=S2717W;SNPEFF_CODON_CHANGE=tCg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_16943337_16943458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2645,196,0
10    16948177    rs780807    A    G    161.21    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.968;QD=4.61;ReadPosRankSum=-1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:25,10:35:99:191,0,836
10    16949401    rs780805    G    A    109.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=15.66;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,107
10    16949447    rs780804    A    C    229.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=15.32;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:6,9:15:99:260,0,209
10    16967401    rs1276712    C    T    1691.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_AMINO_ACID_CHANGE=C2162Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_16967240_16967423;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1724,126,0
10    16967445    rs1276713    T    G    485.87    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.568;DB;DP=37;Dels=0.0;FS=8.209;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.441;QD=13.13;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:19,18:37:99:516,0,675
10    16975078    rs2271461    G    A    538.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DB;DP=40;Dels=0.0;FS=1.248;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.771;QD=13.47;ReadPosRankSum=-1.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:20,20:40:99:569,0,564
10    16979661    rs1801234    T    C    703.70    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.854;DB;DP=55;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=12.79;ReadPosRankSum=-0.901;SNPEFF_AMINO_ACID_CHANGE=S1952;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_16979591_16979783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:27,28:55:99:734,0,891
10    16982244    rs2271463    G    T    1226.46    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.175;DB;DP=119;Dels=0.0;FS=0.89;HRun=3;HaplotypeScore=3.1099;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=10.31;ReadPosRankSum=1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:66,53:119:99:1256,0,2222
10    16989272    rs61841454    G    A    564.34    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=0.476;DB;DP=48;Dels=0.0;FS=1.159;HRun=1;HaplotypeScore=0.9789;MQ=59.61;MQ0=0;MQRankSum=0.277;QD=11.76;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=I1768;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_16989234_16989366;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:27,21:48:99:594,0,745
10    16989580    rs61841455    T    G    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    16996123    rs111366459    T    TA    245.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=12.7057;IndelType=I;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
10    17024375    rs2932895    A    T    119.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
10    17024404    rs3012484    C    T    370.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:404,30,0
10    17024503    rs1801231    G    A    675.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_AMINO_ACID_CHANGE=P1559S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17024483_17024652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:708,51,0
10    17024615    rs1801229    A    T    1020.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=I1521;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17024483_17024652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,31:31:81.25:1053,81,0
10    17026010    rs2291523    A    C    806.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,23:23:66.16:840,66,0
10    17026384    rs3012494    A    G    157.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:190,15,0
10    17032281    rs2291521    C    T    515.05    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.306;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.554;QD=17.76;ReadPosRankSum=-0.863;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:12,17:29:99:545,0,385
10    17032559    rs925522    A    C    653.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=28.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,23:23:60.13:687,60,0
10    17032561    rs925523    A    G    675.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=28.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,24:24:60.13:709,60,0
10    17032590    rs12359150    G    A    158.82    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.965;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=9.34;ReadPosRankSum=0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:11,6:17:99:189,0,419
10    17085790    rs147423498    A    G    322.12    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.626;DB;DP=52;Dels=0.0;FS=1.531;HRun=1;HaplotypeScore=6.6579;MQ=55.01;MQ0=0;MQRankSum=-2.188;QD=6.19;ReadPosRankSum=-3.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:35,17:52:99:352,0,1272
10    17085795    rs139744584    A    T    352.24    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.608;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.6582;MQ=55.11;MQ0=0;MQRankSum=-1.968;QD=6.65;ReadPosRankSum=-4.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    0/1:36,17:53:99:382,0,1183
10    17088272    rs2271689    A    G    100.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:133,12,0
10    17088302    rs17139707    T    A    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    17089328    rs113650085    A    AT    429.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=30.1813;IndelType=I;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:471,39,0
10    17109974    rs79364985    AAC    A    387.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=43.7348;IndelType=D;MQ=61.07;MQ0=0;QD=38.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:430,30,0
10    17110474    rs4747297    C    T    650.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:683,51,0
10    17110595    rs10795440    G    A    4340.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=3.3124;MQ=58.63;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4341,328,0
10    17141952    rs1033765    C    A    1663.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.05;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1697,132,0
10    17146652    rs7068549    C    A    261.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:294,21,0
10    17146667    rs4748353    C    T    165.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
10    17152855    rs12242395    G    A    1000.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,33:33:75.25:1034,75,0
10    17152994    rs1801223    G    A    1622.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.8;SNPEFF_AMINO_ACID_CHANGE=N313;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17152918_17153049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1655,123,0
10    17156151    rs1801222    A    G    430.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=F253S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17156026_17156188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:463,36,0
10    17157314    rs12241493    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:84,6,0
10    17157630    rs2295813    C    T    1242.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377833    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1276,93,0
10    17164760    rs72511801    A    AC    981.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=1;HaplotypeScore=236.504;IndelType=I;MQ=43.04;MQ0=0;QD=32.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377823    GT:AD:DP:GQ:PL    1/1:6,23:30:69.15:1024,69,0
10    17164772    rs67315091    C    CA    132.83    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=32;FS=0.0;HRun=16;HaplotypeScore=330.0805;IndelType=I;MQ=42.3;MQ0=0;MQRankSum=-1.868;QD=4.15;ReadPosRankSum=-0.934;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377823    GT:AD:DP:GQ:PL    0/1:22,7:32:2.75:171,0,3
10    17168615    rs2295812    T    C    214.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377823    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
10    17171265    rs2281648    G    C    1161.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUBN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377823    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1195,90,0
10    17194026    rs17139991    A    G    277.62    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.656;DB;DP=31;Dels=0.0;FS=1.527;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.233;QD=8.96;ReadPosRankSum=0.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488990    GT:AD:DP:GQ:PL    0/1:19,12:31:99:308,0,542
10    17196670    rs3736820    T    C    722    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.856;DB;DP=42;Dels=0.0;FS=2.874;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.531;QD=17.19;ReadPosRankSum=1.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424636    GT:AD:DP:GQ:PL    0/1:19,23:42:99:752,0,578
10    17199419    rs2295810    C    G    2793.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.417;QD=34.49;ReadPosRankSum=1.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424636    GT:AD:DP:GQ:PL    1/1:1,80:81:99:2826,208,0
10    17199778    rs11254408    C    A    618.27    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.213;DB;DP=37;Dels=0.0;FS=3.282;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.812;QD=16.71;ReadPosRankSum=-0.08;SNPEFF_AMINO_ACID_CHANGE=D112Y;SNPEFF_CODON_CHANGE=Gat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17199440_17199783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377766    GT:AD:DP:GQ:PL    0/1:17,20:37:99:648,0,491
10    17199830    rs7894268    A    C    304.94    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.2;DB;DP=22;Dels=0.0;FS=3.067;HRun=0;HaplotypeScore=0.9983;MQ=58.08;MQ0=0;MQRankSum=-0.267;QD=13.86;ReadPosRankSum=-0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424636    GT:AD:DP:GQ:PL    0/1:9,13:22:99:335,0,319
10    17201247    rs17140049    A    G    878.45    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.388;DB;DP=62;Dels=0.0;FS=4.404;HRun=1;HaplotypeScore=1.612;MQ=59.63;MQ0=0;MQRankSum=-0.743;QD=14.17;ReadPosRankSum=0.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    0/1:32,30:62:99:908,0,1079
10    17202226    rs11254412    T    C    75.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.77;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:105,0,27
10    17203970    rs2176285    C    T    465.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:498,36,0
10    17204139    rs33993216    G    A    1432.01    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.21;DB;DP=110;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.575;MQ=57.87;MQ0=0;MQRankSum=-0.125;QD=13.02;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1462,0,1850
10    17204187    rs11254413    G    A    3879.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.493;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=58.6;MQ0=0;MQRankSum=0.906;QD=33.45;ReadPosRankSum=0.747;SNPEFF_AMINO_ACID_CHANGE=H101Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17204165_17204236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377799    GT:AD:DP:GQ:PL    1/1:1,115:116:99:3880,254,0
10    17204246    rs111781208    TA    T    482.33    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.829;DB;DP=74;FS=1.241;HRun=15;HaplotypeScore=581.8255;IndelType=D;MQ=55.81;MQ0=0;MQRankSum=2.619;QD=6.52;ReadPosRankSum=1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    0/1:39,32:74:99:521,0,359
10    17210881    rs7096233    A    G    181.22    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=16;Dels=0.0;FS=5.825;HRun=0;HaplotypeScore=0.6651;MQ=58.83;MQ0=0;MQRankSum=2.011;QD=11.33;ReadPosRankSum=1.164;SNPEFF_AMINO_ACID_CHANGE=F52;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17210840_17210916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525762    GT:AD:DP:GQ:PL    0/1:9,7:16:99:211,0,324
10    17211383    rs7084476    T    C    115.64    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=-2.007;QD=7.23;ReadPosRankSum=-1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451253    GT:AD:DP:GQ:PL    0/1:10,6:16:99:146,0,369
10    17216419    rs2273735    T    C    846.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:879,69,0
10    17216556    rs2273734    C    T    3042.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=R23Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17216550_17216659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457442    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3076,226,0
10    17216803    rs7090965    A    G    157.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
10    17216875    rs7091104    A    G    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    17242462    rs10904905    A    G    413.18    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=52;Dels=0.0;FS=7.888;HRun=0;HaplotypeScore=0.9867;MQ=59.64;MQ0=0;MQRankSum=-0.902;QD=7.95;ReadPosRankSum=-0.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TRDMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351358    GT:AD:DP:GQ:PL    0/1:36,16:52:99:443,0,1294
10    17272622    rs77259094    C    A    1141.09    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.663;DB;DP=132;Dels=0.0;FS=0.685;HRun=0;HaplotypeScore=1.7333;MQ=59.19;MQ0=0;MQRankSum=0.5;QD=8.64;ReadPosRankSum=-0.232;SNPEFF_AMINO_ACID_CHANGE=P5;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17272608_17272709;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VIM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421459    GT:AD:DP:GQ:PL    0/1:81,51:132:99:1171,0,2507
10    17276066    rs57465155    C    T    79.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VIM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478317    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:110,0,28
10    17362784    rs717768    A    G    795.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377610    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:828,66,0
10    17363477    rs9651530    G    C    38.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
10    17364962    rs10466289    A    G    602.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:636,48,0
10    17365012    rs7085734    T    A    875.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:909,72,0
10    17365013    rs7085735    T    A    850.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=35.44;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:1,23:24:69.22:884,69,0
10    17365044    rs7085750    T    G    946.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:979,75,0
10    17365169    rs12354751    A    G    1247.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.74;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1280,102,0
10    17365228    rs112083592    G    GCGCACGCACACA    2329.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=171.2714;IndelType=I;MQ=40.95;MQ0=0;QD=137.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:3,6:17:51.17:2371,51,0
10    17373617    rs2120716    G    A    449.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:483,36,0
10    17451108    rs74850464    C    T    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    17451270    rs746568    C    G    236.31    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.326;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.774;QD=11.25;ReadPosRankSum=0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377602    GT:AD:DP:GQ:PL    0/1:13,8:21:99:266,0,483
10    17659131    rs11254692    C    A    74.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.87;SNPEFF_AMINO_ACID_CHANGE=V70F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17659082_17659367;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326961    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
10    17659149    rs7895850    C    T    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_AMINO_ACID_CHANGE=E64K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_17659082_17659367;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326961    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
10    17702263    rs7091657    T    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377500    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    17738932    rs61842343    T    C    100.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.57;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445846    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,139
10    17750968    rs17464580    T    G    771.80    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=45;Dels=0.0;FS=1.366;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.034;QD=17.15;ReadPosRankSum=0.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377524    GT:AD:DP:GQ:PL    0/1:21,24:45:99:802,0,623
10    17751020    rs186918167    T    C    185.43    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=8.83;ReadPosRankSum=-1.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377524    GT:AD:DP:GQ:PL    0/1:13,8:21:99:215,0,461
10    17751054    rs61842352    C    T    167.76    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=10.49;ReadPosRankSum=1.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377524    GT:AD:DP:GQ:PL    0/1:9,7:16:99:198,0,299
10    18087629    .    CTG    C    2868.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=7.83;DP=143;FS=0.0;HRun=0;HaplotypeScore=469.7547;IndelType=D;MQ=27.99;MQ0=0;MQRankSum=1.84;QD=17.28;ReadPosRankSum=1.005;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_10_18087616_18087687;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL928729.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000450905    GT:AD:DP:GQ:PL    0/1:83,83:143:99:2907,0,3467
10    18138386    .    G    A    146.54    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;MQRankSum=-1.589;QD=18.32;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239761    GT:AD:DP:GQ:PL    0/1:2,6:8:53.73:177,0,54
10    18242005    rs552511    C    G    34.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.73;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:65,0,32
10    18242304    rs691112    T    C    2443.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_AMINO_ACID_CHANGE=D33;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_18242120_18242466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2477,187,0
10    18242311    rs10764176    A    G    1006.42    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.497;DB;DP=64;Dels=0.0;FS=2.124;HRun=1;HaplotypeScore=0.8321;MQ=59.64;MQ0=0;MQRankSum=2.136;QD=15.73;ReadPosRankSum=-0.524;SNPEFF_AMINO_ACID_CHANGE=S36G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_18242120_18242466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    0/1:31,33:64:99:1036,0,1026
10    18250314    rs7095391    A    T    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,100
10    18254317    rs483822    A    G    638.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:671,57,0
10    18254354    rs966720    T    C    419.98    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.182;DB;DP=30;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.644;QD=14.0;ReadPosRankSum=-1.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    0/1:16,14:30:99:450,0,569
10    18254606    rs691513    C    A    231.49    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.129;DB;DP=26;Dels=0.0;FS=10.073;HRun=0;HaplotypeScore=3.4779;MQ=60.0;MQ0=0;MQRankSum=-1.275;QD=8.9;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=T112;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_18254412_18254619;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539911    GT:AD:DP:GQ:PL    0/1:13,11:26:99:261,0,390
10    18254655    rs11011754    C    T    318.19    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.344;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.636;QD=22.73;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    0/1:4,10:14:99:348,0,104
10    18266783    rs1926740    G    T    5280.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,141:141:99:5281,385,0
10    18266989    rs2478568    G    A    2593.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=V170I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_18266831_18267003;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539911    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2626,193,0
10    18267096    rs2437260    G    A    830.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:863,66,0
10    18270140    rs2437261    C    G    603.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:636,48,0
10    18270341    rs72778328    A    G    405.87    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.23;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.612;MQ=59.57;MQ0=0;MQRankSum=1.024;QD=7.52;ReadPosRankSum=-0.501;SNPEFF_AMINO_ACID_CHANGE=Q208R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_18270241_18270412;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539911    GT:AD:DP:GQ:PL    0/1:34,19:54:99:436,0,924
10    18270422    rs1926739    G    A    990.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:1024,75,0
10    18276761    rs2437271    G    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    18280054    rs58262664    C    CT    247.16    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.192;DB;DP=48;FS=2.013;HRun=16;HaplotypeScore=325.2052;IndelType=I;MQ=52.69;MQ0=0;MQRankSum=-1.535;QD=5.15;ReadPosRankSum=-0.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    0/1:23,20:48:82.68:286,0,83
10    18282427    rs2478571    G    A    249.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
10    18289457    rs2497762    C    T    273.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377369    GT:AD:DP:GQ:PL    1/1:0,11:11:24.07:307,24,0
10    18439784    rs71402148    C    CTTTT    222.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=25;HaplotypeScore=235.4465;IndelType=I;MQ=44.48;MQ0=0;QD=6.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282343    GT:AD:DP:GQ:PL    1/1:25,7:33:20.96:265,21,0
10    18439993    rs142218357    A    C    473.31    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.079;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;MQRankSum=1.985;QD=29.58;ReadPosRankSum=-0.873;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282343    GT:AD:DP:GQ:PL    0/1:2,14:16:18.72:503,0,19
10    18691018    rs3750592    G    A    195.38    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.551;DB;DP=23;Dels=0.0;FS=1.824;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.535;QD=8.49;ReadPosRankSum=-1.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282343    GT:AD:DP:GQ:PL    0/1:14,9:23:99:225,0,440
10    18787195    rs11014511    T    C    69.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=8.63;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282343    GT:AD:DP:GQ:PL    0/1:4,4:8:99:99,0,140
10    18789724    rs4485000    T    G    441.05    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.687;DB;DP=38;Dels=0.0;FS=3.6;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.045;QD=11.61;ReadPosRankSum=0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498816    GT:AD:DP:GQ:PL    0/1:23,15:38:99:471,0,808
10    18803035    rs5783607    C    CT    178.24    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DB;DP=14;FS=0.0;HRun=4;HaplotypeScore=28.0721;IndelType=I;MQ=58.66;MQ0=0;MQRankSum=0.581;QD=12.73;ReadPosRankSum=0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282343    GT:AD:DP:GQ:PL    0/1:8,6:14:99:217,0,255
10    18807057    rs7910506    G    A    73.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282343    GT:AD:DP:GQ:PL    0/1:2,3:5:70.19:104,0,70
10    18816633    rs4314963    C    T    987.47    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.596;DB;DP=54;Dels=0.0;FS=3.389;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.44;QD=18.29;ReadPosRankSum=-0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282343    GT:AD:DP:GQ:PL    0/1:20,34:54:99:1017,0,602
10    18828371    rs2228645    C    T    154.61    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=24;Dels=0.0;FS=3.925;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.127;QD=6.44;ReadPosRankSum=1.207;SNPEFF_AMINO_ACID_CHANGE=Y317;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_18828159_18828653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377328    GT:AD:DP:GQ:PL    0/1:17,7:24:99:185,0,527
10    18828635    rs58225473    T    G    669.01    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=49;Dels=0.0;FS=16.048;HRun=1;HaplotypeScore=3.7129;MQ=50.3;MQ0=0;MQRankSum=-0.536;QD=13.65;ReadPosRankSum=-3.752;SNPEFF_AMINO_ACID_CHANGE=D405E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_18828159_18828653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377328    GT:AD:DP:GQ:PL    0/1:24,25:49:99:699,0,524
10    18828663    rs4747352    G    T    987.36    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.05;FS=0.0;HRun=3;HaplotypeScore=35.117;MQ=48.5;MQ0=0;QD=23.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352115    GT:AD:DP:GQ:PL    1/1:2,38:40:87.20:1020,87,0
10    18828669    rs67831174    GTT    G    91.38    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=40;FS=3.222;HRun=19;HaplotypeScore=421.4361;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=1.232;QD=2.28;ReadPosRankSum=-0.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352115    GT:AD:DP:GQ:PL    0/1:29,5:40:99:130,0,143
10    18834797    rs72096796    TA    T    243.90    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.616;DB;DP=48;FS=14.061;HRun=13;HaplotypeScore=562.6563;IndelType=D;MQ=49.47;MQ0=0;MQRankSum=3.762;QD=5.08;ReadPosRankSum=2.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282343    GT:AD:DP:GQ:PL    0/1:20,18:48:99:283,0,264
10    18836957    rs4747353    C    T    114.70    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.676;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=58.71;MQ0=0;MQRankSum=-1.971;QD=6.37;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:13,5:18:99:145,0,458
10    18840919    rs12767546    T    A    206.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.618;QD=11.46;ReadPosRankSum=0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:9,9:18:99:236,0,279
10    18875109    rs12772522    G    A    64.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=7.17;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:5,4:9:94.56:95,0,188
10    18884992    rs78634075    T    C    75.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=9.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:4,4:8:99:106,0,131
10    18898729    rs79212738    G    GT    656.56    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.175;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=79.1223;IndelType=I;MQ=59.19;MQ0=0;MQRankSum=-0.595;QD=28.55;ReadPosRankSum=0.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:6,17:23:99:696,0,165
10    18898960    rs4748494    A    G    103.61    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=14.8;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:2,5:7:63.18:134,0,63
10    18903281    rs11405681    C    CA    284.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.668;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=76.0491;IndelType=I;MQ=53.95;MQ0=0;MQRankSum=0.134;QD=17.76;ReadPosRankSum=0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    1/1:4,10:16:15.67:326,16,0
10    18903605    rs4636555    A    C    102.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=10.24;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,208
10    18931512    rs7907153    T    C    683.78    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=48;Dels=0.0;FS=5.472;HRun=0;HaplotypeScore=0.9665;MQ=59.52;MQ0=0;MQRankSum=-0.693;QD=14.25;ReadPosRankSum=0.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:25,22:48:99:714,0,713
10    18931580    rs7897159    C    T    161.19    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.251;QD=9.48;ReadPosRankSum=1.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:11,6:17:99:191,0,366
10    18937579    rs76261705    A    AAAG    483.52    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.091;DB;DP=25;FS=10.59;HRun=0;HaplotypeScore=79.2696;IndelType=I;MQ=58.13;MQ0=0;MQRankSum=-2.168;QD=19.34;ReadPosRankSum=0.959;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    0/1:16,9:25:99:523,0,502
10    18937722    rs3740104    T    G    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSUN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377304    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
10    18957845    rs4748507    A    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377275    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    19492566    rs7902704    A    T    334.88    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=37;Dels=0.0;FS=2.207;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.27;QD=9.05;ReadPosRankSum=-0.334;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:24,13:37:99:365,0,848
10    19492832    rs7476259    A    C    2908.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=59.31;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2941,220,0
10    19493415    rs2358348    C    G    73.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.53;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,141
10    19494316    rs144770813    TTA    T    610.90    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=4.571;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=132.3605;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=-1.37;QD=16.51;ReadPosRankSum=-0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:20,17:37:99:650,0,869
10    19498278    rs2358355    G    A    1905.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=S183N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19498197_19498609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1939,144,0
10    19546796    rs10763903    T    C    870.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:0,23:23:69.20:904,69,0
10    19546877    rs10508582    C    A    131.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
10    19572134    .    A    ATG    1427.40    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.858;DP=50;FS=1.427;HRun=0;HaplotypeScore=148.8621;IndelType=I;MQ=57.23;MQ0=0;MQRankSum=-0.417;QD=28.55;ReadPosRankSum=1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:21,29:50:99:1466,0,734
10    19572179    rs142223118    CCCA    C    384.11    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=21;FS=3.522;HRun=0;HaplotypeScore=125.4521;IndelType=D;MQ=51.91;MQ0=0;MQRankSum=-2.177;QD=17.46;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:12,10:21:99:423,0,472
10    19572207    rs4748570    C    T    171.47    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.935;QD=13.19;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:7,6:13:99:201,0,247
10    19616626    rs114661731    G    A    1410.29    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.882;DB;DP=114;Dels=0.0;FS=12.561;HRun=0;HaplotypeScore=2.6313;MQ=59.6;MQ0=0;MQRankSum=0.149;QD=12.37;ReadPosRankSum=-1.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:62,52:114:99:1440,0,1959
10    19616735    rs1577289    T    C    809.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=30.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:0,27:27:75.15:843,75,0
10    19620407    rs7100382    A    C    838.77    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.322;DB;DP=61;Dels=0.0;FS=5.406;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.357;QD=13.75;ReadPosRankSum=-0.327;SNPEFF_AMINO_ACID_CHANGE=D562A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19620298_19620511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    0/1:34,27:61:99:869,0,1076
10    19620439    rs7100403    A    G    750.14    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.814;DB;DP=91;Dels=0.0;FS=1.844;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-1.01;QD=8.24;ReadPosRankSum=-0.037;SNPEFF_AMINO_ACID_CHANGE=I573V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19620298_19620511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    0/1:59,32:91:99:780,0,1708
10    19620559    rs7082205    G    A    254.27    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.005;DB;DP=29;Dels=0.0;FS=4.472;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.803;QD=8.77;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:19,10:29:99:284,0,665
10    19636542    rs1609747    G    A    116.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.34;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:2,4:6:51.85:146,0,52
10    19636869    rs1609746    G    T    1388.58    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=90;Dels=0.0;FS=2.89;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.234;QD=15.43;ReadPosRankSum=1.492;SNPEFF_AMINO_ACID_CHANGE=K653N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19636700_19636947;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    0/1:42,48:90:99:1419,0,1342
10    19641035    rs10827306    T    C    1080.57    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=4.047;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.297;QD=14.22;ReadPosRankSum=-0.204;SNPEFF_AMINO_ACID_CHANGE=V713A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19640935_19641226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    0/1:39,37:76:99:1111,0,1189
10    19641231    rs7092566    A    G    1089.84    HaplotypeScoreFilter13    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DB;DP=99;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=153.707;MQ=58.69;MQ0=0;MQRankSum=-2.06;QD=11.01;ReadPosRankSum=-2.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:57,42:99:99:1120,0,1726
10    19641239    rs72408950    CTG    C    3093.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.0;HRun=0;HaplotypeScore=462.8925;IndelType=D;MQ=58.98;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:11,84:95:99:3135,250,0
10    19678286    rs10763974    C    T    1296.66    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=5.64;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2337;MQ=59.61;MQ0=0;MQRankSum=-0.309;QD=10.9;ReadPosRankSum=-0.192;SNPEFF_AMINO_ACID_CHANGE=T917M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19678112_19678291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    0/1:71,48:119:99:1327,0,2004
10    19678497    rs10763975    G    A    693.32    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=2.157;DB;DP=71;Dels=0.0;FS=11.257;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=1.756;QD=9.77;ReadPosRankSum=1.027;SNPEFF_AMINO_ACID_CHANGE=V165I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19678381_19678538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441070    GT:AD:DP:GQ:PL    0/1:44,27:71:99:723,0,1295
10    19678602    rs7896087    T    C    258.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.028;DB;DP=25;Dels=0.0;FS=5.746;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.139;QD=10.33;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:15,10:25:99:288,0,438
10    19678693    rs7911102    C    T    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:2,2:4:56.49:70,0,56
10    19739459    rs6415957    T    G    1257.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1290,99,0
10    19777907    rs112165212    C    T    39.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.08;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=R978W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19777889_19778102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:70,6,0
10    19777982    rs72788548    G    A    77.35    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=11.05;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=G1003S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19777889_19778102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    0/1:2,5:7:64.98:107,0,65
10    19778056    rs2151234    G    A    287.18    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=23.93;ReadPosRankSum=0.29;SNPEFF_AMINO_ACID_CHANGE=K1027;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19777889_19778102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    0/1:1,11:12:11.14:317,0,11
10    19778072    rs2184035    A    G    388.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=K1033E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19777889_19778102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:421,33,0
10    19819932    rs7100242    T    C    85.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
10    19819996    rs1338612    C    G    91.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    19856769    rs4747377    C    G    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
10    19884264    rs10827628    G    A    2442.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.69;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=S1307N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19884123_19884386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2476,202,0
10    19896830    rs7909976    C    A    3033.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_AMINO_ACID_CHANGE=S1389;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_19896706_19896831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454679    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3066,229,0
10    19904870    rs10580913    ATT    A    1087.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=11;HaplotypeScore=327.9834;IndelType=D;MQ=54.81;MQ0=0;QD=22.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    1/1:12,37:49:99:1129,107,0
10    20019892    rs17676071    T    G    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377266    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,70
10    20290956    rs1409344    T    A    243.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:276,21,0
10    20336112    rs10740961    G    T    170.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
10    20357267    rs75861169    A    G    59.78    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.54;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    0/1:4,3:7:89.78:90,0,140
10    20436697    rs41277354    T    C    447.92    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=33;Dels=0.0;FS=2.991;HRun=0;HaplotypeScore=0.734;MQ=59.3;MQ0=0;MQRankSum=0.227;QD=13.57;ReadPosRankSum=1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    0/1:15,18:33:99:478,0,512
10    20437012    rs2358851    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    20500743    rs10827997    T    G    244.27    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.386;QD=18.79;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    0/1:4,9:13:99:274,0,133
10    20506326    rs12783379    T    C    362.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8279;MQ=58.38;MQ0=0;MQRankSum=0.638;QD=13.96;ReadPosRankSum=-1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    0/1:10,15:26:99:393,0,331
10    20506418    rs3817405    G    A    642.70    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.679;DB;DP=63;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.9578;MQ=55.45;MQ0=0;MQRankSum=0.588;QD=10.2;ReadPosRankSum=-1.033;SNPEFF_AMINO_ACID_CHANGE=V259I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_20506355_20506505;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    0/1:37,26:63:99:673,0,944
10    20534333    rs2778979    A    G    1959.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.024;QD=27.59;ReadPosRankSum=0.708;SNPEFF_AMINO_ACID_CHANGE=I321V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_20534274_20534434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    1/1:1,70:71:99:1992,135,0
10    20534545    rs2778978    A    G    1072.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1106,81,0
10    20568524    rs2681949    T    C    545.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377238    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:578,42,0
10    21076307    rs2296607    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    21097212    rs10828135    G    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    21097769    rs3758601    A    G    174.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460652    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
10    21098879    .    G    GAA    476.49    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DP=31;FS=0.0;HRun=16;HaplotypeScore=217.2982;IndelType=I;MQ=49.89;MQ0=0;MQRankSum=0.927;QD=15.37;ReadPosRankSum=-0.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460652    GT:AD:DP:GQ:PL    0/1:14,11:31:11.49:515,0,11
10    21104694    rs4748727    A    T    1292.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1326,99,0
10    21108247    rs1006362    C    T    1547.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=38.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1581,117,0
10    21112111    rs11012353    A    T    467.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=24.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    1/1:0,19:19:48.11:501,48,0
10    21115332    rs1409348    T    C    3092.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=32.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498424    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3125,244,0
10    21115608    rs10828139    A    C    306.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498424    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:340,27,0
10    21120116    rs10491056    A    G    417.77    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.611;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.323;QD=10.99;ReadPosRankSum=-1.703;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482754    GT:AD:DP:GQ:PL    0/1:21,17:38:99:448,0,716
10    21129881    rs2281881    C    A    100.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.41;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    0/1:3,4:7:91.90:131,0,92
10    21141440    rs71524342    AG    A    244.72    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=22;FS=2.392;HRun=3;HaplotypeScore=155.5679;IndelType=D;MQ=57.3;MQ0=0;MQRankSum=2.261;QD=11.12;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    0/1:9,13:22:99:284,0,294
10    21141469    rs703089    T    C    750.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    1/1:0,30:30:63.17:784,63,0
10    21147370    rs1409273    T    A    65.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.34;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    0/1:4,3:7:95.36:95,0,140
10    21148584    rs4748729    C    A    395.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.553;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8287;MQ=59.23;MQ0=0;MQRankSum=0.502;QD=13.19;ReadPosRankSum=0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    0/1:15,15:30:99:426,0,436
10    21157492    rs2296609    T    C    416.78    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.822;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.503;QD=10.42;ReadPosRankSum=0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377122    GT:AD:DP:GQ:PL    0/1:25,15:40:99:447,0,888
10    21157763    rs72196199    CA    C    227.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DB;DP=27;FS=0.0;HRun=14;HaplotypeScore=187.2963;IndelType=D;MQ=56.01;MQ0=0;MQRankSum=1.327;QD=8.44;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377119    GT:AD:DP:GQ:PL    1/1:7,16:27:20.72:270,21,0
10    21176945    rs703100    G    A    145.59    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=13.24;ReadPosRankSum=1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377119    GT:AD:DP:GQ:PL    0/1:6,5:11:99:176,0,172
10    21185821    rs788971    A    C    1947.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.84;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377119    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1981,150,0
10    21188197    rs788976    T    A    112.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.78;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377159    GT:AD:DP:GQ:PL    0/1:2,4:6:29.72:143,0,30
10    21250923    rs73607559    A    C    40.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377159    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
10    21805466    rs112207161    C    CCCTCCT    378.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=95.8655;IndelType=I;MQ=56.64;MQ0=0;QD=29.09;SNPEFF_AMINO_ACID_CHANGE=-350RR;SNPEFF_CODON_CHANGE=-/AGGAGG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_10_21803945_21805845;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf140;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444772    GT:AD:DP:GQ:PL    1/1:6,6:13:15.05:420,15,0
10    21806832    rs946711    A    C    113.32    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=12;Dels=0.0;FS=3.802;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.134;QD=9.44;ReadPosRankSum=-1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487107    GT:AD:DP:GQ:PL    0/1:7,5:12:99:143,0,241
10    21827796    rs1802669    G    A    247.84    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=24;Dels=0.0;FS=1.685;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.298;QD=10.33;ReadPosRankSum=-0.775;SNPEFF_AMINO_ACID_CHANGE=P65;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_21827762_21827841;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307729    GT:AD:DP:GQ:PL    0/1:15,9:24:99:278,0,398
10    21884471    rs11592565    A    G    129.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=12.92;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462999    GT:AD:DP:GQ:PL    0/1:5,5:10:99:159,0,181
10    21913369    rs61129347    G    GTA    246.70    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=26.4894;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=22.43;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307729    GT:AD:DP:GQ:PL    0/1:5,6:11:99:286,0,132
10    21962245    .    A    C    113.75    HaplotypeScoreFilter13    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DP=44;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=32.2116;MQ=41.99;MQ0=0;MQRankSum=-0.287;QD=2.59;ReadPosRankSum=1.105;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468309    GT:AD:DP:GQ:PL    0/1:26,18:44:99:144,0,421
10    21970077    rs1243197    T    C    625.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307729    GT:AD:DP:GQ:PL    1/1:0,19:19:54.14:658,54,0
10    22047988    .    G    A    698.11    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.83;DP=44;Dels=0.0;FS=3.324;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.46;QD=15.87;ReadPosRankSum=1.167;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483085    GT:AD:DP:GQ:PL    0/1:20,24:44:99:728,0,573
10    22048330    rs9045    C    T    522.73    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.838;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=11.62;ReadPosRankSum=0.724;SNPEFF_AMINO_ACID_CHANGE=A455;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_22048099_22048547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376980    GT:AD:DP:GQ:PL    0/1:26,19:45:99:553,0,678
10    22193422    rs792455    T    C    250.92    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.355;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.532;QD=11.95;ReadPosRankSum=2.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376980    GT:AD:DP:GQ:PL    0/1:11,10:21:99:281,0,337
10    22208630    rs2807978    T    C    239.96    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.888;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9825;MQ=60.0;MQ0=0;MQRankSum=2.239;QD=10.91;ReadPosRankSum=-0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376946    GT:AD:DP:GQ:PL    0/1:12,10:22:99:270,0,437
10    22828841    rs60268490    GGA    G    551.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.821;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=272.168;IndelType=D;MQ=57.8;MQ0=0;MQRankSum=0.821;QD=14.51;ReadPosRankSum=2.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323883    GT:AD:DP:GQ:PL    1/1:20,17:38:23.74:593,24,0
10    22829059    rs112020551    T    C    310.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.662;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.78;MQ0=0;MQRankSum=0.127;QD=14.1;ReadPosRankSum=-1.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323883    GT:AD:DP:GQ:PL    0/1:7,14:22:99:340,0,231
10    22830541    rs746203    C    T    74.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323883    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
10    22830719    rs943192    G    C    1858.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7051;MQ=57.88;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323883    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1892,141,0
10    22839463    rs10047326    C    A    122.78    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=15.35;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323883    GT:AD:DP:GQ:PL    0/1:2,6:8:63.83:153,0,64
10    22839628    rs10828317    T    C    1552.92    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.371;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=14.25;ReadPosRankSum=-0.502;SNPEFF_AMINO_ACID_CHANGE=N111S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_22839588_22839701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323883    GT:AD:DP:GQ:PL    0/1:55,54:109:99:1583,0,1709
10    22856279    rs11013051    C    T    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376565    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:70,0,32
10    22856946    rs2296624    C    T    328.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.591;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=16.4;ReadPosRankSum=-0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323883    GT:AD:DP:GQ:PL    0/1:10,10:20:99:358,0,250
10    22862069    rs7916957    T    C    302.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323883    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:336,27,0
10    22896779    rs2765997    C    T    1096.39    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.757;DB;DP=94;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=11.66;ReadPosRankSum=0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376565    GT:AD:DP:GQ:PL    0/1:55,39:94:99:1126,0,1792
10    23003226    rs1132816    A    G    93.17    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.443;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=4.66;ReadPosRankSum=1.773;SNPEFF_AMINO_ACID_CHANGE=S10;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_23003112_23003484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376573    GT:AD:DP:GQ:PL    0/1:14,6:20:99:123,0,475
10    23297252    rs10828395    G    A    267.31    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.344;QD=19.09;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=R363Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_23297205_23297303;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376528    GT:AD:DP:GQ:PL    0/1:4,10:14:99:297,0,122
10    23297301    rs11817610    C    T    30.90    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=2.81;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=N379;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_23297205_23297303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376528    GT:AD:DP:GQ:PL    0/1:8,3:11:60.89:61,0,184
10    23297336    rs11819616    A    T    68.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=9.8;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376523    GT:AD:DP:GQ:PL    0/1:4,3:7:98.60:99,0,148
10    23297429    rs11013234    A    G    43.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376523    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:73,0,22
10    23408139    rs2296468    A    G    1219.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=29.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376510    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1252,105,0
10    23408543    rs3793758    G    A    253.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376510    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
10    23482363    rs1886763    A    G    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376504    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
10    23482635    rs7918487    T    C    6633.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DB;DP=222;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=6.4222;MQ=59.38;MQ0=0;MQRankSum=-0.273;QD=29.75;ReadPosRankSum=-1.395;SNPEFF_AMINO_ACID_CHANGE=S263P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_23482633_23483181;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376504    GT:AD:DP:GQ:PL    1/1:1,221:222:99:6633,485,0
10    23528557    rs7075896    C    A    361.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf115;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376501    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:394,30,0
10    23592468    rs4439422    G    C    691.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.78;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376500    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:724,54,0
10    23611188    rs5783834    TATTA    T    1073.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=109.473;IndelType=D;MQ=47.12;MQ0=0;QD=53.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323327    GT:AD:DP:GQ:PL    1/1:1,19:20:60.21:1116,60,0
10    23622202    rs4259746    G    A    977.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323327    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:1010,75,0
10    23633368    rs11013409    T    G    98.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323327    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:131,12,0
10    23633566    rs2036917    C    A    681.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=R47;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_23633498_23633774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf67;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323327    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:714,54,0
10    24498289    rs113382859    G    GA    123.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=103.1819;IndelType=I;MQ=56.13;MQ0=0;MQRankSum=0.747;QD=8.84;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376452    GT:AD:DP:GQ:PL    1/1:7,6:14:4.72:164,5,0
10    24564831    rs10764458    C    T    1395.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376452    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1429,111,0
10    24722205    rs2274830    T    C    55.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9497;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=5.52;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376452    GT:AD:DP:GQ:PL    0/1:6,4:10:85.16:85,0,176
10    24762892    rs61735604    G    A    747.44    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.218;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;MQRankSum=-0.94;QD=16.99;ReadPosRankSum=-1.181;SNPEFF_AMINO_ACID_CHANGE=A246T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_24762157_24762989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307544    GT:AD:DP:GQ:PL    0/1:17,27:44:99:777,0,491
10    24790393    rs1112284    A    G    249.39    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DB;DP=28;Dels=0.0;FS=1.542;HRun=1;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=-0.047;QD=8.91;ReadPosRankSum=0.047;SNPEFF_AMINO_ACID_CHANGE=S323;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_24790308_24790474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307544    GT:AD:DP:GQ:PL    0/1:17,11:28:99:279,0,498
10    24813297    rs113571639    C    T    627.44    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=2.463;DB;DP=61;Dels=0.0;FS=3.753;HRun=0;HaplotypeScore=2.101;MQ=59.62;MQ0=0;MQRankSum=-0.654;QD=10.29;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=A517;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_24813252_24813693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307544    GT:AD:DP:GQ:PL    0/1:38,23:61:99:657,0,1066
10    24821885    rs113471853    A    T    132.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=16;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.115;QD=8.27;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430453    GT:AD:DP:GQ:PL    0/1:10,6:16:99:162,0,362
10    24822219    rs11598911    C    G    375.02    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.031;QD=23.44;ReadPosRankSum=-0.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430453    GT:AD:DP:GQ:PL    0/1:4,12:16:99:405,0,120
10    24833137    rs2250411    C    T    1098.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.717;DB;DP=74;Dels=0.0;FS=1.002;HRun=1;HaplotypeScore=1.445;MQ=59.69;MQ0=0;MQRankSum=0.822;QD=14.85;ReadPosRankSum=-0.127;SNPEFF_AMINO_ACID_CHANGE=I1329;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_24831812_24833410;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1217;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376451    GT:AD:DP:GQ:PL    0/1:37,37:74:99:1129,0,995
10    24873150    rs35918968    AAT    A    134.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=19.3515;IndelType=D;MQ=37.83;MQ0=0;QD=26.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320481    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
10    24873369    rs1127893    C    G    2345.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5253;MQ=36.39;MQ0=4;QD=25.78;SNPEFF_AMINO_ACID_CHANGE=S1399T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_24873316_24875035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447364    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2379,204,0
10    24878042    rs9663520    C    A    596.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477137    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:630,48,0
10    24878129    rs7478260    G    A    2616.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.162;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.536;MQ=60.0;MQ0=0;MQRankSum=1.409;QD=33.55;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477137    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2650,161,0
10    24880712    rs10828678    G    A    1231.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376410    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1265,99,0
10    24883773    rs61854258    T    G    214.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376410    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
10    24884319    rs7902693    A    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376410    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    24884779    rs149315884    GA    G    1521.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=8;HaplotypeScore=144.8693;IndelType=D;MQ=61.48;MQ0=0;QD=26.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376410    GT:AD:DP:GQ:PL    1/1:4,54:58:99:1563,162,0
10    24889901    rs3748221    T    G    627.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.26;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320481    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:661,48,0
10    24890828    rs2886851    T    C    1431.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320481    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1465,111,0
10    24908686    rs3748222    T    C    1856.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.73;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=N500S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_24908402_24910298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320481    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1889,144,0
10    24924134    rs41279874    G    A    79.59    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.763;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.979;QD=5.31;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376410    GT:AD:DP:GQ:PL    0/1:11,4:15:99:110,0,406
10    25231171    rs3748223    A    G    325.35    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.572;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.332;QD=11.22;ReadPosRankSum=0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320152    GT:AD:DP:GQ:PL    0/1:17,12:29:99:355,0,606
10    25231515    rs10828731    C    T    114.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=12.76;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320152    GT:AD:DP:GQ:PL    0/1:3,6:9:87.96:145,0,88
10    25273311    rs5783912    G    GA    44.63    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=22;FS=4.26;HRun=16;HaplotypeScore=192.9887;IndelType=I;MQ=51.19;MQ0=0;MQRankSum=-0.248;QD=2.03;ReadPosRankSum=-2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ENKUR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376363    GT:AD:DP:GQ:PL    0/1:17,5:22:24.47:84,0,24
10    25465327    rs11014433    G    A    90.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.365;QD=9.06;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376351    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,180
10    25883475    rs11818706    C    T    157.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR158;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376351    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
10    25888180    rs10828833    A    G    1906.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.66;SNPEFF_AMINO_ACID_CHANGE=I1209V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_25886701_25891155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR158;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376351    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1939,144,0
10    26243710    rs12247318    A    C    102.39    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.552;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.517;QD=3.94;ReadPosRankSum=-1.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:20,6:26:99:132,0,729
10    26310410    rs3737275    T    C    874.40    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.945;DB;DP=55;Dels=0.0;FS=1.289;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.321;QD=15.9;ReadPosRankSum=-0.853;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376301    GT:AD:DP:GQ:PL    0/1:20,35:55:99:904,0,617
10    26310679    rs17666079    A    C    376.01    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.665;DB;DP=25;Dels=0.0;FS=3.203;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=15.04;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376301    GT:AD:DP:GQ:PL    0/1:12,13:25:99:406,0,385
10    26312824    rs1339814    G    A    603.18    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.629;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.628;QD=12.83;ReadPosRankSum=-2.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376302    GT:AD:DP:GQ:PL    0/1:23,24:47:99:633,0,839
10    26355862    rs3824702    G    T    155.77    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=20;Dels=0.0;FS=2.315;HRun=0;HaplotypeScore=0.7887;MQ=57.66;MQ0=0;MQRankSum=0.475;QD=7.79;ReadPosRankSum=-0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:13,7:20:99:186,0,404
10    26355872    rs3824701    A    G    146.53    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=19;Dels=0.0;FS=2.058;HRun=0;HaplotypeScore=1.5226;MQ=57.53;MQ0=0;MQRankSum=-0.718;QD=7.71;ReadPosRankSum=0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:12,7:19:99:177,0,351
10    26355906    rs3824700    G    A    284.55    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=26;Dels=0.0;FS=6.455;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=-0.489;QD=10.94;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=R319H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_26355904_26356003;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:14,12:26:99:315,0,441
10    26355992    rs3824699    A    G    327.77    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.208;DB;DP=32;Dels=0.0;FS=7.806;HRun=0;HaplotypeScore=0.0;MQ=55.67;MQ0=0;MQRankSum=-1.926;QD=10.24;ReadPosRankSum=0.264;SNPEFF_AMINO_ACID_CHANGE=I348V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_26355904_26356003;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:15,17:32:99:358,0,543
10    26356014    rs3824698    C    T    274.94    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.088;DB;DP=24;Dels=0.0;FS=4.117;HRun=3;HaplotypeScore=0.9933;MQ=55.2;MQ0=0;MQRankSum=-0.381;QD=11.46;ReadPosRankSum=-1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:10,14:24:99:305,0,353
10    26356015    rs3824697    A    G    279.30    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.732;DB;DP=24;Dels=0.0;FS=4.117;HRun=1;HaplotypeScore=0.9933;MQ=55.2;MQ0=0;MQRankSum=-1.669;QD=11.64;ReadPosRankSum=-1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:10,14:24:99:309,0,360
10    26356037    rs3824696    C    T    237.05    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=16;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.898;QD=14.82;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:6,10:16:99:267,0,204
10    26356066    rs3824695    C    T    182.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=53.95;MQ0=0;MQRankSum=-0.6;QD=15.17;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:4,8:12:99:212,0,118
10    26357573    rs35636005    G    A    139.33    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=11.61;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:7,5:12:99:169,0,253
10    26357625    rs3817421    T    C    430.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.666;QD=15.37;ReadPosRankSum=0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:14,14:28:99:460,0,461
10    26357747    rs35379457    C    T    376.30    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.383;QD=7.1;ReadPosRankSum=-0.829;SNPEFF_AMINO_ACID_CHANGE=Y368;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_26357697_26357813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:25,28:53:99:406,0,766
10    26357748    rs3817420    G    A    390.95    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.168;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.472;QD=7.52;ReadPosRankSum=-0.549;SNPEFF_AMINO_ACID_CHANGE=V369I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_26357697_26357813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:25,27:52:99:421,0,727
10    26357820    rs3817419    C    T    584.03    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.243;DB;DP=40;Dels=0.0;FS=3.227;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.204;QD=14.6;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:22,18:40:99:614,0,633
10    26357971    rs3817418    A    G    35.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.9;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:4,2:6:65.40:65,0,151
10    26358913    rs3758443    G    A    149.69    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=18.71;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:3,5:8:99:180,0,103
10    26359180    rs3758441    T    G    549.66    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.699;DB;DP=35;Dels=0.0;FS=4.856;HRun=0;HaplotypeScore=0.734;MQ=58.99;MQ0=0;MQRankSum=-0.215;QD=15.7;ReadPosRankSum=-0.878;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:16,19:35:99:580,0,528
10    26359200    rs3834403    T    TA    608.42    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=1.223;DB;DP=33;FS=6.054;HRun=2;HaplotypeScore=122.9942;IndelType=I;MQ=58.93;MQ0=0;MQRankSum=0.188;QD=18.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:16,17:33:99:647,0,323
10    26417531    rs17739425    T    G    229.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.704;DB;DP=24;Dels=0.0;FS=5.814;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.317;QD=9.56;ReadPosRankSum=0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:16,8:24:99:259,0,522
10    26436287    rs2368158    G    T    120.80    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=8.63;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:9,5:14:99:151,0,289
10    26443646    rs3818956    G    A    192.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=18;Dels=0.0;FS=2.077;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.71;ReadPosRankSum=0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:9,9:18:99:223,0,221
10    26446312    rs3758449    G    A    885.12    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=55;Dels=0.0;FS=7.756;HRun=1;HaplotypeScore=1.8947;MQ=60.0;MQ0=0;MQRankSum=0.976;QD=16.09;ReadPosRankSum=-0.025;SNPEFF_AMINO_ACID_CHANGE=S956N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_26446239_26446444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:24,31:55:99:915,0,804
10    26457536    rs1342320    C    T    77.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.94;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,110
10    26462463    rs1330575    T    A    213.16    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=21.32;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477691    GT:AD:DP:GQ:PL    0/1:3,7:10:92.94:243,0,93
10    26462790    rs3740232    G    A    1006.92    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=3.029;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7998;MQ=60.0;MQ0=0;MQRankSum=0.165;QD=15.26;ReadPosRankSum=1.735;SNPEFF_AMINO_ACID_CHANGE=E1199;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_26462592_26463486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:29,37:66:99:1037,0,825
10    26463043    rs3740231    A    T    946.97    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.641;DB;DP=81;Dels=0.0;FS=3.005;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=0.169;QD=11.69;ReadPosRankSum=-0.862;SNPEFF_AMINO_ACID_CHANGE=T1284S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_26462592_26463486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:42,39:81:99:977,0,1270
10    26463130    rs1999240    C    A    1109.63    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.087;DB;DP=79;Dels=0.0;FS=1.879;HRun=0;HaplotypeScore=2.2931;MQ=59.71;MQ0=0;MQRankSum=0.222;QD=14.05;ReadPosRankSum=-0.064;SNPEFF_AMINO_ACID_CHANGE=R1313S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_26462592_26463486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:44,35:79:99:1140,0,1298
10    26463569    rs3758448    G    A    119.87    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=6.31;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:13,6:19:99:150,0,475
10    26463587    rs3758447    C    G    157.69    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.965;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=1.055;QD=9.28;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265944    GT:AD:DP:GQ:PL    0/1:11,6:17:99:188,0,327
10    26562330    rs6482549    A    G    54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259271    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
10    26781355    rs1775245    T    C    739.61    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.349;DB;DP=61;Dels=0.0;FS=6.465;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.852;QD=12.12;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356785    GT:AD:DP:GQ:PL    0/1:33,28:61:99:770,0,946
10    26781388    rs1775246    G    A    1594.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356785    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1628,123,0
10    26790136    rs812007    T    A    337.32    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.572;DB;DP=41;Dels=0.0;FS=3.041;HRun=1;HaplotypeScore=0.9332;MQ=59.54;MQ0=0;MQRankSum=0.411;QD=8.23;ReadPosRankSum=-1.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376236    GT:AD:DP:GQ:PL    0/1:23,17:41:99:367,0,763
10    26802361    rs12783959    C    T    387.75    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=25;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.843;QD=15.51;ReadPosRankSum=-0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376236    GT:AD:DP:GQ:PL    0/1:12,13:25:99:418,0,416
10    26802633    rs35115529    A    AT    262.82    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.178;DB;DP=60;FS=6.175;HRun=14;HaplotypeScore=219.9739;IndelType=I;MQ=58.52;MQ0=0;MQRankSum=-1.336;QD=4.38;ReadPosRankSum=-1.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBB1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376236    GT:AD:DP:GQ:PL    0/1:42,16:60:99:302,0,337
10    26993597    rs34296355    AT    A    2909.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.0;HRun=5;HaplotypeScore=245.0026;IndelType=D;MQ=60.24;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376203    GT:AD:DP:GQ:PL    1/1:3,83:86:99:2952,248,0
10    26993725    rs1677730    G    A    1493.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.93;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376203    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1527,117,0
10    26993737    rs1780193    A    T    736.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=1.3123;MQ=57.44;MQ0=0;QD=21.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376203    GT:AD:DP:GQ:PL    1/1:0,35:35:78.13:769,78,0
10    26994150    rs1780192    A    C    539.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376203    GT:AD:DP:GQ:PL    1/1:0,16:17:42.14:572,42,0
10    26994345    rs1748356    G    A    544.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376203    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:578,42,0
10    26994412    rs1780191    T    C    74.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376203    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
10    26998739    rs2368183    G    C    1995.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376203    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2029,147,0
10    27009334    rs1780196    A    G    960.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376203    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:993,75,0
10    27035478    rs12776877    C    T    327.37    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.363;QD=12.59;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346832    GT:AD:DP:GQ:PL    0/1:15,11:26:99:357,0,493
10    27054375    rs7915128    C    T    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346832    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
10    27058116    rs7908040    G    A    120.04    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.01;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346832    GT:AD:DP:GQ:PL    0/1:1,4:5:22.75:150,0,23
10    27059608    rs1324637    C    T    530.94    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.544;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.53;MQ0=0;MQRankSum=0.785;QD=13.27;ReadPosRankSum=-0.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346832    GT:AD:DP:GQ:PL    0/1:21,19:40:99:561,0,736
10    27065976    rs7096584    G    A    760.47    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.884;DB;DP=65;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=11.7;ReadPosRankSum=1.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346832    GT:AD:DP:GQ:PL    0/1:38,27:65:99:790,0,1151
10    27318371    rs1963735    G    A    152.49    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.881;QD=16.94;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376070    GT:AD:DP:GQ:PL    0/1:4,5:9:99:182,0,134
10    27322306    rs146819984    C    T    468.21    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.602;DB;DP=48;Dels=0.0;FS=6.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.253;QD=9.75;ReadPosRankSum=-0.021;SNPEFF_AMINO_ACID_CHANGE=V1219I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27322154_27322306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376087    GT:AD:DP:GQ:PL    0/1:29,19:48:99:498,0,988
10    27326999    rs7096505    T    C    347.56    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=27;Dels=0.0;FS=1.69;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=12.87;ReadPosRankSum=-0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376070    GT:AD:DP:GQ:PL    0/1:14,13:27:99:378,0,466
10    27355271    rs3060820    TATTA    T    357.86    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=64.0428;IndelType=D;MQ=43.66;MQ0=0;MQRankSum=-2.262;QD=32.53;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376087    GT:AD:DP:GQ:PL    0/1:3,8:11:99:397,0,207
10    27368126    rs3737055    A    C    567.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.224;DB;DP=36;Dels=0.0;FS=4.746;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.328;QD=15.77;ReadPosRankSum=0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376087    GT:AD:DP:GQ:PL    0/1:16,20:36:99:598,0,444
10    27375377    rs10443987    A    T    254.93    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=23;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.837;QD=11.08;ReadPosRankSum=0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376087    GT:AD:DP:GQ:PL    0/1:10,13:23:99:285,0,345
10    27375696    .    TG    T    82.22    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DP=11;FS=0.0;HRun=1;HaplotypeScore=128.4465;IndelType=D;MQ=50.96;MQ0=0;MQRankSum=-2.037;QD=7.47;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376087    GT:AD:DP:GQ:PL    0/1:6,5:11:77.85:121,0,78
10    27382240    rs2297147    T    C    150.32    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.251;QD=8.84;ReadPosRankSum=1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376087    GT:AD:DP:GQ:PL    0/1:11,6:17:99:180,0,396
10    27389197    rs7897309    T    C    858.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=28.62;SNPEFF_AMINO_ACID_CHANGE=Q20R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27389014_27389421;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376087    GT:AD:DP:GQ:PL    1/1:0,30:30:81.16:892,81,0
10    27400861    rs9833    G    A    1199.96    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.028;DB;DP=85;Dels=0.0;FS=4.104;HRun=0;HaplotypeScore=0.9998;MQ=59.51;MQ0=0;MQRankSum=0.357;QD=14.12;ReadPosRankSum=0.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546122    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1230,0,1526
10    27405310    rs2480718    C    G    970.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326799    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:1003,75,0
10    27405331    rs7901976    C    T    251.10    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=17.94;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326799    GT:AD:DP:GQ:PL    0/1:6,8:14:99:281,0,170
10    27409555    rs10829190    G    A    155.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=17.31;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463270    GT:AD:DP:GQ:PL    0/1:3,6:9:97.13:186,0,97
10    27425021    rs11015563    G    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326799    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:73,0,30
10    27436295    rs3780926    A    C    648.87    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.901;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8305;MQ=58.89;MQ0=0;MQRankSum=-0.743;QD=15.45;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326799    GT:AD:DP:GQ:PL    0/1:20,22:42:99:679,0,638
10    27441973    rs1775350    C    T    69.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=11.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326799    GT:AD:DP:GQ:PL    0/1:2,4:6:67.19:99,0,67
10    27442247    rs788221    G    C    520    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.439;DB;DP=41;Dels=0.0;FS=4.643;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.509;QD=12.68;ReadPosRankSum=0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326799    GT:AD:DP:GQ:PL    0/1:21,20:41:99:550,0,720
10    27444303    rs3824593    G    A    85.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.37;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_27444299_27444541;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342386    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
10    27444328    rs7919803    C    A    34.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=50.65;MQ0=0;MQRankSum=-1.067;QD=4.37;ReadPosRankSum=1.067;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_27444299_27444541;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342386    GT:AD:DP:GQ:PL    0/1:2,6:8:64.99:65,0,67
10    27444329    rs7907981    T    C    40.89    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=50.65;MQ0=0;MQRankSum=-1.589;QD=5.11;ReadPosRankSum=0.572;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326799    GT:AD:DP:GQ:PL    0/1:2,6:8:68.43:71,0,68
10    27444344    rs7907988    T    G    189.36    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=53.36;MQ0=0;MQRankSum=-0.118;QD=17.21;ReadPosRankSum=-0.354;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YME1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326799    GT:AD:DP:GQ:PL    0/1:2,9:11:55.39:219,0,55
10    27454111    rs7068375    A    T    236.05    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=28;Dels=0.0;FS=1.974;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.329;QD=8.43;ReadPosRankSum=-1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342386    GT:AD:DP:GQ:PL    0/1:17,11:28:99:266,0,592
10    27455902    rs67614903    GATATGTAATTCTTAATACATATTA    G    913.50    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=246.4447;IndelType=D;MQ=52.19;MQ0=0;MQRankSum=-1.134;QD=76.13;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342386    GT:AD:DP:GQ:PL    0/1:5,7:12:99:953,0,1513
10    27456003    rs788238    G    A    1180.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.46;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342386    GT:AD:DP:GQ:PL    1/1:0,37:37:90.29:1214,90,0
10    27459670    rs1981296    C    T    413.88    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.56;DB;DP=37;Dels=0.0;FS=3.087;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=11.19;ReadPosRankSum=-1.027;SNPEFF_AMINO_ACID_CHANGE=I594;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27458873_27460012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342386    GT:AD:DP:GQ:PL    0/1:21,16:37:99:444,0,763
10    27461953    rs6482600    T    A    993.51    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DB;DP=60;Dels=0.0;FS=1.833;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.422;QD=16.56;ReadPosRankSum=1.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342386    GT:AD:DP:GQ:PL    0/1:28,32:60:99:1024,0,877
10    27475444    rs10741130    T    C    626.91    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.986;DB;DP=84;Dels=0.0;FS=0.94;HRun=1;HaplotypeScore=2.1623;MQ=59.17;MQ0=0;MQRankSum=1.164;QD=7.46;ReadPosRankSum=1.605;SNPEFF_AMINO_ACID_CHANGE=T834;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27475308_27475848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342386    GT:AD:DP:GQ:PL    0/1:61,23:84:99:657,0,1789
10    27475494    rs10764686    T    C    500.95    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.29;DB;DP=60;Dels=0.0;FS=5.137;HRun=0;HaplotypeScore=0.9734;MQ=59.23;MQ0=0;MQRankSum=0.13;QD=8.35;ReadPosRankSum=-1.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MASTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477034    GT:AD:DP:GQ:PL    0/1:38,22:60:99:531,0,1286
10    27497074    rs7919523    C    T    934.36    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.147;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.22;MQ0=0;MQRankSum=1.362;QD=15.84;ReadPosRankSum=-0.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375888    GT:AD:DP:GQ:PL    0/1:30,29:59:99:964,0,1038
10    27506854    rs1775355    C    T    573.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=33.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412279    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:607,45,0
10    27508758    rs10764690    T    C    391.11    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.786;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.74;MQ0=0;MQRankSum=-0.077;QD=10.57;ReadPosRankSum=0.874;SNPEFF_AMINO_ACID_CHANGE=P138;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27508652_27508786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375905    GT:AD:DP:GQ:PL    0/1:21,16:37:99:421,0,719
10    27508837    rs788213    T    C    422.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375888    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:456,33,0
10    27523967    rs534226    G    A    148.74    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.291;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=6.47;ReadPosRankSum=-0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375888    GT:AD:DP:GQ:PL    0/1:14,9:23:99:179,0,453
10    27529048    rs944909    G    C    73.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.28;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375888    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,103
10    27529549    rs2797078    C    A    113.63    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=16.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375889    GT:AD:DP:GQ:PL    0/1:1,6:7:19.31:144,0,19
10    27529565    rs2489372    T    C    172.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375889    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:205,15,0
10    27570130    rs1252880    C    T    228.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.32;MQ0=6;QD=15.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-748L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438905    GT:AD:DP:GQ:PL    1/1:2,13:15:27.03:261,27,0
10    27570312    .    G    A    38.04    MQFilter40;QDFilter2    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.86;MQ0=74;MQRankSum=-0.736;QD=0.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-748L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438905    GT:AD:DP:GQ:PL    0/1:39,41:80:21.42:68,0,21
10    27577568    rs2780686    G    A    445.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.82;MQ0=1;QD=29.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-748L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438905    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:479,36,0
10    27687775    rs1638630    T    C    1651.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=38.4;SNPEFF_AMINO_ACID_CHANGE=I584M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27687116_27688169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCHD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438700    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1684,123,0
10    27692256    rs148140519    A    G    847.72    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=58.72;MQ0=0;MQRankSum=0.448;QD=11.61;ReadPosRankSum=0.028;SNPEFF_AMINO_ACID_CHANGE=V414;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27692141_27692286;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCHD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438700    GT:AD:DP:GQ:PL    0/1:39,34:73:99:878,0,1198
10    27702169    rs6482625    C    T    5983.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=169;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5662;MQ=59.86;MQ0=0;QD=35.41;SNPEFF_AMINO_ACID_CHANGE=V337;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27702091_27703297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCHD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438700    GT:AD:DP:GQ:PL    1/1:0,169:169:99:5984,469,0
10    27702688    rs7087552    C    T    2082.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=34.14;SNPEFF_AMINO_ACID_CHANGE=E164;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27702091_27703297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCHD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438700    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2116,163,0
10    27702725    rs6482626    A    G    1487.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=57.44;MQ0=0;QD=27.05;SNPEFF_AMINO_ACID_CHANGE=L152P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27702091_27703297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCHD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438700    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1521,117,0
10    27703234    rs7071851    A    G    531.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=54.61;MQ0=0;QD=31.26;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_27702091_27703297;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438700    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:564,45,0
10    27815665    rs2642273    A    G    444.01    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.773;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.496;QD=9.65;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356940    GT:AD:DP:GQ:PL    0/1:30,16:46:99:474,0,1051
10    27821259    rs149355635    AATTTT    A    313.18    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=42.0206;IndelType=D;MQ=44.98;MQ0=0;MQRankSum=-0.742;QD=44.74;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356940    GT:AD:DP:GQ:PL    0/1:1,6:7:71.24:352,0,71
10    27964134    rs17756631    T    C    707.68    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=46;Dels=0.0;FS=1.407;HRun=0;HaplotypeScore=3.5104;MQ=59.09;MQ0=0;MQRankSum=0.118;QD=15.38;ReadPosRankSum=-0.948;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375790    GT:AD:DP:GQ:PL    0/1:19,26:46:99:738,0,613
10    27964470    rs2253230    G    A    496.90    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.275;DB;DP=32;Dels=0.0;FS=6.043;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.826;QD=15.53;ReadPosRankSum=-0.191;SNPEFF_AMINO_ACID_CHANGE=N284;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_27964450_27964483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375790    GT:AD:DP:GQ:PL    0/1:12,20:32:99:527,0,414
10    28030093    rs1907375    G    A    73.86    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=9.23;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375790    GT:AD:DP:GQ:PL    0/1:3,5:8:94.74:104,0,95
10    28030094    rs1907376    C    A    74.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.221;QD=9.35;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375790    GT:AD:DP:GQ:PL    0/1:3,5:8:99:105,0,105
10    28151604    rs143020107    AT    A    176.38    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=14;FS=0.0;HRun=6;HaplotypeScore=40.5706;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=-0.471;QD=12.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305242    GT:AD:DP:GQ:PL    0/1:6,8:14:99:215,0,195
10    28223714    rs114990538    G    A    33.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305242    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
10    28225897    rs2297646    G    T    253.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=15.86;ReadPosRankSum=2.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537573    GT:AD:DP:GQ:PL    0/1:8,8:16:99:284,0,287
10    28228865    rs7893462    A    G    403.79    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.265;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.252;QD=8.24;ReadPosRankSum=0.12;SNPEFF_AMINO_ACID_CHANGE=N211;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_28228826_28228936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545014    GT:AD:DP:GQ:PL    0/1:31,18:49:99:434,0,819
10    28233120    rs3824590    A    C    129.83    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.23;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480504    GT:AD:DP:GQ:PL    0/1:3,5:8:81.36:160,0,81
10    28233469    rs3802517    T    A    90.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.1;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480504    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,220
10    28233931    rs34717952    G    A    173.75    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.659;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.628;QD=4.04;ReadPosRankSum=-1.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305242    GT:AD:DP:GQ:PL    0/1:26,17:43:99:204,0,823
10    28233933    rs34084011    A    G    190.63    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.976;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=4.33;ReadPosRankSum=-1.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305242    GT:AD:DP:GQ:PL    0/1:26,18:44:99:221,0,830
10    28247957    rs34350686    A    C    890.99    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=1.895;DB;DP=56;Dels=0.0;FS=2.499;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.429;QD=15.91;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239715    GT:AD:DP:GQ:PL    0/1:25,31:56:99:921,0,726
10    28250410    rs74127168    G    A    32.71    QDFilter2    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=3.042;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.28;MQ0=0;MQRankSum=-2.961;QD=1.42;ReadPosRankSum=-1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239715    GT:AD:DP:GQ:PL    0/1:19,4:23:62.70:63,0,580
10    28258034    rs71489604    G    A    50.63    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.45;MQ0=8;MQRankSum=-1.133;QD=2.81;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239715    GT:AD:DP:GQ:PL    0/1:9,9:18:80.62:81,0,146
10    28259936    rs67085081    TAAACAAAC    T    838.02    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=3.11;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=138.7095;IndelType=D;MQ=58.0;MQ0=0;MQRankSum=0.474;QD=49.3;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239715    GT:AD:DP:GQ:PL    0/1:5,12:17:99:877,0,437
10    28270612    rs9334541    C    T    830.25    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=4.739;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.366;QD=19.31;ReadPosRankSum=2.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239715    GT:AD:DP:GQ:PL    0/1:18,25:43:99:860,0,491
10    28276273    rs3808909    G    A    441.06    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.752;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.053;QD=24.5;ReadPosRankSum=1.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239715    GT:AD:DP:GQ:PL    0/1:4,14:18:99:471,0,102
10    28348815    rs1361922    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337532    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
10    28378758    rs2997211    T    C    910.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=K197R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_28378600_28378770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445954    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:943,75,0
10    28436534    rs11006897    A    G    863.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337532    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:896,69,0
10    28438835    rs72381252    TCTGCA    T    738.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=81.5174;IndelType=D;MQ=49.26;MQ0=0;QD=56.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337532    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:781,36,0
10    28490983    rs138922326    T    C    278.75    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.879;DB;DP=22;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.56;QD=12.67;ReadPosRankSum=-0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337532    GT:AD:DP:GQ:PL    0/1:12,10:22:99:309,0,425
10    28822373    rs12767429    A    C    311.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.64;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_28822242_28822549;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347934    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:345,27,0
10    28824264    rs2486640    G    T    55.25    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=9.21;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347934    GT:AD:DP:GQ:PL    0/1:1,5:6:28.62:85,0,29
10    28872481    rs35140807    C    CA    206.28    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=63;FS=4.416;HRun=16;HaplotypeScore=502.2825;IndelType=I;MQ=53.9;MQ0=0;MQRankSum=1.605;QD=3.27;ReadPosRankSum=-0.587;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448193    GT:AD:DP:GQ:PL    0/1:40,14:63:99:245,0,274
10    28899841    rs11371837    A    AT    255.61    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.64;DB;DP=44;FS=0.0;HRun=11;HaplotypeScore=119.8575;IndelType=I;MQ=60.25;MQ0=0;MQRankSum=1.161;QD=5.81;ReadPosRankSum=0.792;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424454    GT:AD:DP:GQ:PL    0/1:32,12:44:99:295,0,360
10    28903771    rs332174    G    A    33.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.65;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424454    GT:AD:DP:GQ:PL    0/1:4,2:6:63.90:64,0,151
10    28905079    rs332176    A    G    763.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.069;DB;DP=50;Dels=0.0;FS=4.992;HRun=0;HaplotypeScore=0.734;MQ=59.63;MQ0=0;MQRankSum=-0.149;QD=15.28;ReadPosRankSum=-0.505;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428935    GT:AD:DP:GQ:PL    0/1:20,30:50:99:794,0,607
10    29162295    .    GTA    G    285.29    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=0;HaplotypeScore=47.1952;IndelType=D;MQ=61.44;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf126;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375520    GT:AD:DP:GQ:PL    1/1:5,9:14:27.08:327,27,0
10    29188024    rs10826540    G    A    1397.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.13;MQ0=10;QD=23.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-492M23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395291    GT:AD:DP:GQ:PL    1/1:7,53:60:99:1431,126,0
10    29188056    rs61838421    T    C    570.68    MQFilter40    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.781;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9315;MQ=37.1;MQ0=4;MQRankSum=0.952;QD=12.68;ReadPosRankSum=0.014;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-492M23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395291    GT:AD:DP:GQ:PL    0/1:19,26:45:99:601,0,358
10    29188387    rs2797462    C    T    1325.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.44;MQ0=1;QD=31.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-492M23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395291    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1359,111,0
10    29577924    rs2768670    G    C    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
10    29578084    rs17851935    A    G    243.47    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=29;Dels=0.0;FS=3.771;HRun=1;HaplotypeScore=0.0;MQ=52.41;MQ0=0;MQRankSum=0.168;QD=8.4;ReadPosRankSum=-0.168;SNPEFF_AMINO_ACID_CHANGE=K13R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29577990_29578159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    0/1:18,11:29:99:273,0,520
10    29580735    rs2148901    C    T    688.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.97;MQ0=2;QD=28.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    1/1:0,24:24:54.17:721,54,0
10    29580743    rs2148902    G    A    653.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.82;MQ0=3;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    1/1:1,24:25:51.16:687,51,0
10    29581440    rs3818550    C    T    578.82    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.164;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.11;MQ0=0;MQRankSum=-0.541;QD=13.78;ReadPosRankSum=0.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    0/1:20,22:42:99:609,0,706
10    29581527    rs11007514    C    T    1293.66    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.972;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.33;MQ0=0;MQRankSum=0.529;QD=17.97;ReadPosRankSum=-0.225;SNPEFF_AMINO_ACID_CHANGE=G119;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29581448_29581606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    0/1:27,45:72:99:1324,0,848
10    29581658    rs10826593    C    T    664.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.296;DB;DP=30;Dels=0.0;FS=6.3;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.476;QD=22.14;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    0/1:10,20:30:99:694,0,234
10    29581786    rs10763702    C    T    72.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=10.29;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,137
10    29598896    rs2796293    A    G    167.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
10    29599251    rs7087851    T    A    36.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.0;MQ0=0;QD=18.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375500    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
10    29747417    rs1887465    C    T    944.15    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=2.098;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.167;QD=16.86;ReadPosRankSum=0.716;SNPEFF_AMINO_ACID_CHANGE=P1082;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29747363_29747518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535393    GT:AD:DP:GQ:PL    0/1:23,33:56:99:974,0,682
10    29747618    rs7098527    T    A    150.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=15.1;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:5,5:10:99:181,0,178
10    29750950    rs1886999    A    G    116    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
10    29751092    rs12777968    G    C    293.52    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.585;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.439;QD=8.89;ReadPosRankSum=1.432;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:22,11:33:99:324,0,689
10    29754609    rs1057952    T    C    420.37    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=35;Dels=0.0;FS=3.837;HRun=1;HaplotypeScore=1.9977;MQ=59.34;MQ0=0;MQRankSum=0.524;QD=12.01;ReadPosRankSum=-2.079;SNPEFF_AMINO_ACID_CHANGE=T1590;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29754524_29754679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375400    GT:AD:DP:GQ:PL    0/1:16,19:35:99:450,0,472
10    29759174    rs68029349    TG    T    230.66    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=3.998;DB;DP=26;FS=7.005;HRun=6;HaplotypeScore=109.214;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=0.174;QD=8.87;ReadPosRankSum=-0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460007    GT:AD:DP:GQ:PL    0/1:15,11:26:99:270,0,436
10    29759225    rs11007607    A    G    404.58    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.885;DB;DP=41;Dels=0.0;FS=5.923;HRun=1;HaplotypeScore=0.7887;MQ=59.97;MQ0=0;MQRankSum=2.189;QD=9.87;ReadPosRankSum=-0.903;SNPEFF_AMINO_ACID_CHANGE=A1515;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29759205_29759412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375400    GT:AD:DP:GQ:PL    0/1:24,17:41:99:435,0,715
10    29759427    rs2274492    G    A    278.58    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.22;QD=12.66;ReadPosRankSum=-1.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460007    GT:AD:DP:GQ:PL    0/1:10,12:22:99:309,0,325
10    29759434    rs2274493    C    T    256.13    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.241;QD=15.07;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460007    GT:AD:DP:GQ:PL    0/1:8,9:17:99:286,0,233
10    29760209    rs2274494    C    T    341.56    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=24.4;ReadPosRankSum=-1.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460007    GT:AD:DP:GQ:PL    0/1:4,10:14:99:372,0,105
10    29762606    rs12769176    C    T    77.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.34;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:107,0,26
10    29762997    rs932794    C    G    201    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=16.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,8:12:21.06:234,21,0
10    29770786    rs10763721    G    A    427.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=25.73;MQ0=3;QD=22.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482607    GT:AD:DP:GQ:PL    1/1:0,19:19:42.10:460,42,0
10    29774905    rs34518368    C    T    143.34    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=15.93;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474106    GT:AD:DP:GQ:PL    0/1:4,5:9:99:173,0,132
10    29779936    rs45519332    G    A    108.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.82;MQ0=0;MQRankSum=-0.851;QD=10.81;ReadPosRankSum=-0.47;SNPEFF_AMINO_ACID_CHANGE=S1344;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29779776_29779948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:5,5:10:99:138,0,179
10    29782025    rs34163498    C    G    60.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=10.05;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491872    GT:AD:DP:GQ:PL    0/1:3,3:6:90.31:90,0,94
10    29782066    rs4749439    A    G    318.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.68;MQ0=0;QD=31.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491872    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:351,30,0
10    29783813    rs6481600    G    A    3025.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.9;MQ0=2;QD=27.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491872    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3058,232,0
10    29783885    rs1056782    A    G    4286.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.69;MQ0=2;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=L1267;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29783843_29783929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4286,319,0
10    29783984    rs3031505    GAAACT    G    158.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=39.4044;IndelType=D;MQ=32.68;MQ0=1;QD=6.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,24:6:15.04:200,15,0
10    29784114    rs6481601    T    C    163.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.47;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,8:8:18.03:196,18,0
10    29801555    rs60356120    T    C    139.04    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.387;QD=12.64;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:6,5:11:99:169,0,201
10    29801659    rs56817459    G    A    776.82    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.83;MQ0=0;MQRankSum=2.046;QD=14.12;ReadPosRankSum=0.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:28,27:55:99:807,0,837
10    29801848    rs12775779    G    A    1057.26    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.22;DB;DP=86;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=53.2;MQ0=0;MQRankSum=0.957;QD=12.29;ReadPosRankSum=-0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:40,46:86:99:1087,0,973
10    29801887    rs1261937    T    C    1846.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1880,144,0
10    29812422    rs7070135    C    A    680.73    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=0.873;DB;DP=62;Dels=0.0;FS=1.072;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.154;QD=10.98;ReadPosRankSum=1.591;SNPEFF_AMINO_ACID_CHANGE=V1041L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29812380_29812956;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:37,25:62:99:711,0,1067
10    29812602    rs7070678    G    T    2286.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=36.29;SNPEFF_AMINO_ACID_CHANGE=R555;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29812380_29812956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375400    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2319,172,0
10    29813348    rs61846562    T    G    260.34    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.16;DB;DP=41;Dels=0.0;FS=3.394;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.154;QD=6.35;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:28,13:41:99:290,0,888
10    29813382    rs61846563    C    T    607.44    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.9;DB;DP=54;Dels=0.0;FS=2.473;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.591;QD=11.25;ReadPosRankSum=-0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:33,21:54:99:637,0,908
10    29815738    rs56159903    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    29818604    rs913035    A    C    112.97    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=13;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.191;QD=8.69;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:7,6:13:99:143,0,214
10    29818827    rs3780843    C    T    359.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.745;DB;DP=28;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.482;QD=12.83;ReadPosRankSum=-1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:14,14:28:99:389,0,412
10    29820070    rs11819202    G    A    106.62    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.85;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,169
10    29820758    rs17695155    T    C    146.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=13.34;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:6,5:11:99:177,0,215
10    29821089    rs17756919    C    T    590.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=44;Dels=0.0;FS=1.49;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=13.41;ReadPosRankSum=0.46;SNPEFF_AMINO_ACID_CHANGE=V617;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29820931_29821101;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:24,20:44:99:620,0,756
10    29821162    rs36109852    T    C    362.45    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.062;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.093;QD=15.1;ReadPosRankSum=0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:10,14:24:99:392,0,345
10    29821475    rs41284748    G    A    117.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.585;DB;DP=21;Dels=0.0;FS=1.862;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=5.62;ReadPosRankSum=1.506;SNPEFF_AMINO_ACID_CHANGE=A607;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29821458_29822387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:14,7:21:99:148,0,426
10    29821523    rs1328323    T    C    363.23    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.899;QD=15.79;ReadPosRankSum=2.45;SNPEFF_AMINO_ACID_CHANGE=K591;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29821458_29822387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:10,13:23:99:393,0,348
10    29822032    rs1247696    C    T    606.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_AMINO_ACID_CHANGE=V422I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29821458_29822387;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:640,48,0
10    29822159    rs7076239    T    C    567.50    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.813;DB;DP=40;Dels=0.0;FS=1.189;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.596;QD=14.19;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=L379;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29821458_29822387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:19,21:40:99:597,0,627
10    29833998    rs2368393    A    G    681.11    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.068;DB;DP=63;Dels=0.0;FS=5.067;HRun=1;HaplotypeScore=0.0;MQ=58.52;MQ0=0;MQRankSum=-0.007;QD=10.81;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:37,26:63:99:711,0,1126
10    29834003    rs2368392    G    A    677.09    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.276;DB;DP=63;Dels=0.0;FS=5.213;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;MQRankSum=-0.759;QD=10.75;ReadPosRankSum=1.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:39,24:63:99:707,0,1051
10    29834095    rs4463752    G    A    896    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.36;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:929,69,0
10    29834105    rs1410472    C    T    228.24    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.402;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.99;MQ0=0;MQRankSum=-0.735;QD=10.37;ReadPosRankSum=0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:13,9:22:99:258,0,458
10    29834114    rs1410473    C    G    157.64    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=-0.713;QD=7.88;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:13,7:20:99:188,0,465
10    29839513    rs10159964    A    G    73.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.8;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483758    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:104,0,67
10    29839787    rs10160013    A    G    561.41    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=61;Dels=0.0;FS=2.212;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.975;QD=9.2;ReadPosRankSum=1.799;SNPEFF_AMINO_ACID_CHANGE=V189A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29839526_29840192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:36,25:61:99:591,0,1109
10    29839798    rs17834991    A    G    942.02    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.042;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.105;QD=16.53;ReadPosRankSum=-1.317;SNPEFF_AMINO_ACID_CHANGE=Y185;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29839526_29840192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:24,33:57:99:972,0,587
10    29839864    rs1270874    A    C    1559.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=A163;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29839526_29840192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1592,126,0
10    29840038    rs3740003    A    G    1488.22    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.376;DB;DP=96;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=1.9664;MQ=59.76;MQ0=0;MQRankSum=0.042;QD=15.5;ReadPosRankSum=-0.878;SNPEFF_AMINO_ACID_CHANGE=I105;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29839526_29840192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:43,53:96:99:1518,0,1379
10    29840164    rs3740002    A    G    298.25    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.382;QD=9.04;ReadPosRankSum=-0.681;SNPEFF_AMINO_ACID_CHANGE=S63;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29839526_29840192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:20,12:33:99:328,0,709
10    29843833    rs1547169    C    T    420.03    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=33;Dels=0.0;FS=1.376;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.247;QD=12.73;ReadPosRankSum=1.284;SNPEFF_AMINO_ACID_CHANGE=G13;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_29843712_29843863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:18,15:33:99:450,0,576
10    29844067    rs1547170    T    C    580.50    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=0.97;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.647;QD=22.33;ReadPosRankSum=0.593;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    0/1:9,17:26:99:610,0,281
10    29891161    rs11007666    A    G    441.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=24.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,18:18:39.11:474,39,0
10    29891260    rs12416605    C    T    527.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:561,42,0
10    29891321    rs2505901    T    C    319.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355867    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:353,27,0
10    30306804    rs2478839    G    A    798.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1462;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464386    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:831,60,0
10    30316072    rs3739998    C    G    2358.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.37;MQ0=0;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=S1002T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_30315032_30318795;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1462;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375377    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2391,178,0
10    30317073    rs9337951    G    A    668.28    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=35;Dels=0.0;FS=1.519;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=19.09;ReadPosRankSum=-0.773;SNPEFF_AMINO_ACID_CHANGE=H668;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_30315032_30318795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1462;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375377    GT:AD:DP:GQ:PL    0/1:11,23:35:99:698,0,363
10    30317949    rs2478835    C    T    1598.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.81;MQ0=0;QD=31.35;SNPEFF_AMINO_ACID_CHANGE=P376;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_30315032_30318795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1462;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375377    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1632,123,0
10    30611614    rs2484284    C    T    188.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417581    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:221,18,0
10    30615190    rs2484286    C    T    174.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417581    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
10    30615638    rs1029172    A    G    952.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263063    GT:AD:DP:GQ:PL    1/1:0,31:32:78.22:986,78,0
10    30626003    rs12221163    C    T    657.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421701    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:690,51,0
10    30629082    rs2689215    C    T    521.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263063    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:554,42,0
10    30629549    rs2252246    G    T    160.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263063    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:193,15,0
10    30637995    rs10826783    C    G    1053.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=30.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263063    GT:AD:DP:GQ:PL    1/1:0,34:34:90.26:1087,90,0
10    30638358    rs2782976    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    30653402    rs7094026    A    G    1561.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7675;MQ=59.13;MQ0=0;QD=29.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358107    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1595,120,0
10    30653561    rs7094285    C    G    1098.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358107    GT:AD:DP:GQ:PL    1/1:0,35:35:90.27:1131,90,0
10    30657716    rs12767454    G    A    275.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471055    GT:AD:DP:GQ:PL    1/1:0,10:13:24.08:309,24,0
10    30658517    rs10826793    C    T    783.66    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=2.671;DB;DP=65;Dels=0.0;FS=3.708;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=0.531;QD=12.06;ReadPosRankSum=-0.639;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471055    GT:AD:DP:GQ:PL    0/1:34,31:65:99:814,0,978
10    30728101    rs1042058    T    C    887.22    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.343;DB;DP=58;Dels=0.0;FS=5.636;HRun=0;HaplotypeScore=1.4105;MQ=59.6;MQ0=0;MQRankSum=-1.548;QD=15.3;ReadPosRankSum=0.522;SNPEFF_AMINO_ACID_CHANGE=Y78;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_30727845_30728203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263056    GT:AD:DP:GQ:PL    0/1:24,34:58:99:917,0,809
10    30728250    rs2907    A    G    1476.10    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=3.315;DB;DP=102;Dels=0.0;FS=0.754;HRun=0;HaplotypeScore=1.6483;MQ=59.09;MQ0=0;MQRankSum=1.149;QD=14.47;ReadPosRankSum=-0.093;SNPEFF_AMINO_ACID_CHANGE=Y128C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_30727845_30728371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375322    GT:AD:DP:GQ:PL    0/1:53,48:102:99:1506,0,1565
10    30739058    rs303428    A    G    58.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=0.55;QD=8.36;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263056    GT:AD:DP:GQ:PL    0/1:3,4:7:88.49:88,0,104
10    30740379    rs303426    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413724    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    30749895    rs3034    G    A    178.68    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=13.74;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542547    GT:AD:DP:GQ:PL    0/1:7,6:13:99:209,0,246
10    30807338    rs2009540    A    G    1054.28    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.117;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.683;QD=14.64;ReadPosRankSum=0.011;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-449I17.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396326    GT:AD:DP:GQ:PL    0/1:31,41:72:99:1084,0,897
10    30900679    rs60735155    A    G    57.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=-0.55;QD=8.26;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375318    GT:AD:DP:GQ:PL    0/1:4,3:7:87.81:88,0,141
10    30901628    rs2659493    G    A    402.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.11;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375318    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:436,33,0
10    30901722    rs112691801    GC    G    186.44    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=3.889;DB;DP=26;FS=2.378;HRun=3;HaplotypeScore=101.3075;IndelType=D;MQ=57.82;MQ0=0;MQRankSum=1.133;QD=7.17;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375318    GT:AD:DP:GQ:PL    0/1:18,8:26:99:225,0,620
10    30901756    rs9954    G    A    399.89    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.364;QD=9.3;ReadPosRankSum=-1.193;SNPEFF_AMINO_ACID_CHANGE=N170;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_30901751_30901829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYZL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375318    GT:AD:DP:GQ:PL    0/1:27,16:43:99:430,0,908
10    30915571    rs395546    C    T    122.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.86;MQ0=0;MQRankSum=-2.843;QD=10.25;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375318    GT:AD:DP:GQ:PL    0/1:6,6:12:99:153,0,207
10    30915590    rs48973    T    C    536.97    PASS    AB=0.217;AC=1;AF=0.50;AN=2;BaseQRankSum=1.745;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.39;MQ0=1;MQRankSum=1.575;QD=23.35;ReadPosRankSum=0.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375318    GT:AD:DP:GQ:PL    0/1:5,18:23:66.18:567,0,66
10    30915618    rs3852488    G    A    140.59    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.642;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.48;MQ0=1;MQRankSum=-0.653;QD=3.7;ReadPosRankSum=-1.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375318    GT:AD:DP:GQ:PL    0/1:27,11:38:99:171,0,865
10    30915637    rs3864847    A    G    164.66    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.486;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2859;MQ=48.66;MQ0=1;MQRankSum=-0.81;QD=3.92;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375318    GT:AD:DP:GQ:PL    0/1:32,10:42:99:195,0,972
10    30973994    rs4749579    G    A    43.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422642    GT:AD:DP:GQ:PL    0/1:2,2:4:26.22:74,0,26
10    30974174    rs4749580    T    C    539.21    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=31;Dels=0.0;FS=7.343;HRun=1;HaplotypeScore=0.9159;MQ=52.72;MQ0=0;MQRankSum=-1.122;QD=17.39;ReadPosRankSum=0.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422642    GT:AD:DP:GQ:PL    0/1:12,19:31:99:569,0,297
10    30978164    rs28363791    A    G    74.21    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=16;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=50.6;MQ0=0;MQRankSum=-1.002;QD=4.64;ReadPosRankSum=-1.002;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422642    GT:AD:DP:GQ:PL    0/1:9,7:16:99:104,0,273
10    30978274    rs4988769    T    C    642.50    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.015;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=11.995;MQ=48.3;MQ0=8;MQRankSum=-3.668;QD=11.27;ReadPosRankSum=-1.759;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422642    GT:AD:DP:GQ:PL    0/1:27,30:57:99:672,0,923
10    30978282    rs11008182    G    T    329.63    HaplotypeScoreFilter13    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=3.789;DB;DP=67;Dels=0.0;FS=3.343;HRun=0;HaplotypeScore=14.9657;MQ=47.63;MQ0=9;MQRankSum=2.608;QD=4.92;ReadPosRankSum=1.245;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422642    GT:AD:DP:GQ:PL    0/1:53,14:67:99:360,0,1362
10    30978365    rs111412331    C    T    564.26    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=3.692;DB;DP=90;Dels=0.0;FS=5.045;HRun=0;HaplotypeScore=1.4972;MQ=52.75;MQ0=3;MQRankSum=-6.186;QD=6.27;ReadPosRankSum=-0.168;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422642    GT:AD:DP:GQ:PL    0/1:62,28:90:99:594,0,1953
10    30978377    rs10763815    G    C    263.76    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.527;DB;DP=92;Dels=0.0;FS=4.124;HRun=0;HaplotypeScore=3.4409;MQ=53.55;MQ0=5;MQRankSum=-5.78;QD=2.87;ReadPosRankSum=-1.605;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422642    GT:AD:DP:GQ:PL    0/1:69,23:92:99:294,0,2223
10    30978433    rs4747723    A    G    1072.37    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.911;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.018;MQ=56.23;MQ0=8;MQRankSum=1.29;QD=12.47;ReadPosRankSum=0.199;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422642    GT:AD:DP:GQ:PL    0/1:37,48:85:99:1102,0,1190
10    30989188    rs10740829    G    C    155.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=31.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-14C22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435645    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
10    31134214    rs3740236    A    G    784.27    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=51;Dels=0.0;FS=1.166;HRun=0;HaplotypeScore=1.9952;MQ=60.0;MQ0=0;MQRankSum=-0.707;QD=15.38;ReadPosRankSum=1.234;SNPEFF_AMINO_ACID_CHANGE=H285;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_31133710_31134502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF438;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375311    GT:AD:DP:GQ:PL    0/1:25,26:51:99:814,0,826
10    31134557    rs17229657    T    C    354.84    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7046;MQ=59.22;MQ0=0;MQRankSum=1.275;QD=14.78;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF438;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331737    GT:AD:DP:GQ:PL    0/1:11,13:24:99:385,0,298
10    31138817    rs10160116    G    A    946.24    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=80;Dels=0.0;FS=8.4;HRun=0;HaplotypeScore=1.9512;MQ=59.48;MQ0=0;MQRankSum=0.015;QD=11.83;ReadPosRankSum=-2.433;SNPEFF_AMINO_ACID_CHANGE=P124S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_31137460_31139296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF438;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538351    GT:AD:DP:GQ:PL    0/1:46,34:80:99:976,0,1457
10    31146615    rs16932010    T    C    489.70    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.232;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8893;MQ=59.14;MQ0=0;MQRankSum=0.825;QD=9.07;ReadPosRankSum=-0.343;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_10_31146609_31146707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF438;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000331737    GT:AD:DP:GQ:PL    0/1:34,20:54:99:520,0,1037
10    31146643    rs4237394    T    C    937.86    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.821;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.0236;MQ=59.13;MQ0=0;MQRankSum=-0.226;QD=17.7;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF438;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361310    GT:AD:DP:GQ:PL    0/1:22,31:53:99:968,0,703
10    31166088    rs10763848    G    A    70.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.0;QD=10.13;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF438;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331737    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,141
10    31651824    rs9664264    T    C    2690.02    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=0.558;DB;DP=144;Dels=0.0;FS=4.318;HRun=1;HaplotypeScore=1.3123;MQ=55.82;MQ0=0;MQRankSum=-4.359;QD=18.68;ReadPosRankSum=-0.08;SNPEFF_AMINO_ACID_CHANGE=R310;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_31650356_31652937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL117340.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359888    GT:AD:DP:GQ:PL    0/1:47,97:144:99:2720,0,1257
10    31750099    rs7918614    C    T    531.20    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.43;MQ0=0;MQRankSum=-0.054;QD=16.1;ReadPosRankSum=0.597;SNPEFF_AMINO_ACID_CHANGE=D47;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_31749966_31750166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZEB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446923    GT:AD:DP:GQ:PL    0/1:15,18:33:99:561,0,499
10    31784554    rs41289011    A    G    171.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=13.22;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZEB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320985    GT:AD:DP:GQ:PL    0/1:7,6:13:99:202,0,228
10    31803516    rs220060    G    A    712.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZEB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320985    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:745,54,0
10    31813130    rs67202968    CT    C    134.08    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=24;FS=0.0;HRun=15;HaplotypeScore=148.448;IndelType=D;MQ=56.73;MQ0=0;MQRankSum=0.65;QD=5.59;ReadPosRankSum=0.938;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZEB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424869    GT:AD:DP:GQ:PL    0/1:13,11:24:36.01:173,0,36
10    32103077    rs2799012    C    T    197.18    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=11.6;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311380    GT:AD:DP:GQ:PL    0/1:9,8:17:99:227,0,302
10    32106851    rs2778650    A    G    328.03    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.43;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.23;MQ0=0;MQRankSum=-1.377;QD=10.93;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311380    GT:AD:DP:GQ:PL    0/1:19,11:30:99:358,0,671
10    32115133    rs2255544    A    G    135.31    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311380    GT:AD:DP:GQ:PL    0/1:4,5:9:99:165,0,137
10    32141655    rs146488179    TTC    T    101.94    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=144.2258;IndelType=D;MQ=42.9;MQ0=0;MQRankSum=-1.663;QD=9.27;ReadPosRankSum=-1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311380    GT:AD:DP:GQ:PL    0/1:4,7:11:27.49:141,0,27
10    32142850    rs2799019    G    A    106.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.62;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311380    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,156
10    32143208    rs2808090    A    C    32.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.42;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311380    GT:AD:DP:GQ:PL    0/1:4,2:6:62.49:62,0,144
10    32306872    rs211376    G    A    298.32    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=58.55;MQ0=0;MQRankSum=0.731;QD=10.29;ReadPosRankSum=-0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    0/1:17,12:29:99:328,0,568
10    32307534    rs11428920    T    TA    1047.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=1;HaplotypeScore=184.5079;IndelType=I;MQ=61.07;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    1/1:1,28:29:82.14:1090,82,0
10    32309005    rs1775715    A    G    103.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.34;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,214
10    32311969    rs176924    A    G    1618.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1652,120,0
10    32321441    rs2907822    G    A    211.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
10    32321495    rs398686    C    T    134.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=16.81;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    0/1:2,6:8:62.41:164,0,62
10    32323591    rs211277    G    T    259.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.475;DB;DP=42;Dels=0.0;FS=1.365;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.611;QD=6.19;ReadPosRankSum=0.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    0/1:28,14:42:99:290,0,717
10    32326037    rs172431    G    A    45.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=6.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    0/1:4,3:7:75.86:76,0,130
10    32328526    rs1251363    G    C    33.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.54;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    0/1:4,2:6:63.23:63,0,150
10    32344747    rs211299    G    A    172.80    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.625;QD=12.34;ReadPosRankSum=1.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302418    GT:AD:DP:GQ:PL    0/1:6,8:14:99:203,0,168
10    32561858    rs11594459    A    C    233.73    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.556;QD=13.75;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263062    GT:AD:DP:GQ:PL    0/1:9,8:17:99:264,0,241
10    32575793    rs2986931    A    G    329.60    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.892;QD=9.16;ReadPosRankSum=-0.698;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263062    GT:AD:DP:GQ:PL    0/1:22,14:36:99:360,0,664
10    32635834    rs11597888    G    A    669.09    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.879;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.056;QD=20.28;ReadPosRankSum=0.692;SNPEFF_AMINO_ACID_CHANGE=L4;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_32635691_32636113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263062    GT:AD:DP:GQ:PL    0/1:12,21:33:99:699,0,343
10    32742256    rs2490505    T    G    489.31    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.529;DB;DP=37;Dels=0.0;FS=3.05;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.272;QD=13.22;ReadPosRankSum=1.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277657    GT:AD:DP:GQ:PL    0/1:21,16:37:99:519,0,674
10    32745248    rs56391924    A    C    2287.35    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.497;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=15.25;ReadPosRankSum=1.044;SNPEFF_AMINO_ACID_CHANGE=K148Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_32745179_32745262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277657    GT:AD:DP:GQ:PL    0/1:70,80:150:99:2317,0,2041
10    32745396    rs2244153    A    G    1128.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277657    GT:AD:DP:GQ:PL    1/1:0,31:31:90.28:1162,90,0
10    32751526    rs12416437    A    T    149.25    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=11.48;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277657    GT:AD:DP:GQ:PL    0/1:7,6:13:99:179,0,252
10    32751901    rs2505380    G    A    1210.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277657    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1243,93,0
10    32806972    rs2990984    C    T    778.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=56;Dels=0.0;FS=6.521;HRun=1;HaplotypeScore=1.5762;MQ=60.0;MQ0=0;MQRankSum=0.356;QD=13.91;ReadPosRankSum=1.399;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545067    GT:AD:DP:GQ:PL    0/1:32,24:56:99:809,0,1101
10    32807182    rs2947052    C    T    75.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.93;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545067    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:106,0,30
10    32832214    rs2990986    G    A    61.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.86;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277657    GT:AD:DP:GQ:PL    0/1:6,3:9:91.77:92,0,221
10    32833066    rs11813339    T    A    258.71    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.136;DB;DP=22;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.05;QD=11.76;ReadPosRankSum=0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493685    GT:AD:DP:GQ:PL    0/1:9,13:22:99:289,0,275
10    32833121    rs11008968    G    C    756.42    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.76;DB;DP=58;Dels=0.0;FS=4.15;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.255;QD=13.04;ReadPosRankSum=0.908;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493685    GT:AD:DP:GQ:PL    0/1:34,24:58:99:786,0,1129
10    32833143    rs12266680    C    T    899.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.882;DB;DP=75;Dels=0.0;FS=8.516;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.438;QD=11.99;ReadPosRankSum=0.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493685    GT:AD:DP:GQ:PL    0/1:45,30:75:99:929,0,1405
10    32854400    rs3824591    T    C    233.31    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=21.21;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277657    GT:AD:DP:GQ:PL    0/1:4,7:11:99:263,0,123
10    32856746    rs12268559    A    C    500.09    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.563;DB;DP=41;Dels=0.0;FS=6.603;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.565;QD=12.2;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=K118T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_32856598_32856819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435402    GT:AD:DP:GQ:PL    0/1:23,18:41:99:530,0,765
10    32974700    rs10508777    G    T    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
10    32974874    .    A    AAATAGATAAATAC    3150.55    PASS    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.345;DP=38;FS=6.658;HRun=0;HaplotypeScore=356.2571;IndelType=I;MQ=47.48;MQ0=0;MQRankSum=-4.214;QD=82.91;ReadPosRankSum=0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    0/1:32,5:38:99:3190,0,1874
10    32974969    rs1762526    A    G    2220.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=I25V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_32974897_32975008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375037    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2254,175,0
10    33015782    rs928701    G    A    770.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:803,60,0
10    33015855    rs4145863    G    A    251.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
10    33017782    rs10827116    C    T    293.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.304;QD=13.97;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    0/1:9,12:21:99:323,0,274
10    33018351    rs1414548    G    C    1065.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.47;SNPEFF_AMINO_ACID_CHANGE=T212;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33018260_33018385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375037    GT:AD:DP:GQ:PL    1/1:0,27:27:81.26:1099,81,0
10    33093858    rs35054696    TAC    T    313.14    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=3.486;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=104.1114;IndelType=D;MQ=59.4;MQ0=0;MQRankSum=-0.68;QD=10.1;ReadPosRankSum=-1.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    0/1:18,13:31:99:352,0,678
10    33123824    rs4448627    G    C    415.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.77;SNPEFF_AMINO_ACID_CHANGE=G336A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33123743_33123826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375037    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:448,33,0
10    33123972    rs11009108    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    33134696    rs147213794    T    TAC    613.41    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.863;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=149.6922;IndelType=I;MQ=55.79;MQ0=0;MQRankSum=0.332;QD=22.72;ReadPosRankSum=0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    0/1:11,15:27:11.91:652,0,12
10    33143396    rs1418538    G    A    1564.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_AMINO_ACID_CHANGE=V566I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33143328_33143417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375030    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1598,120,0
10    33165226    rs2488305    G    A    254.85    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=28;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=9.1;ReadPosRankSum=-1.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302316    GT:AD:DP:GQ:PL    0/1:18,10:28:99:285,0,600
10    33195877    rs3824602    C    T    1299.68    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.287;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.649;QD=14.94;ReadPosRankSum=-1.125;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302278    GT:AD:DP:GQ:PL    0/1:43,44:87:99:1330,0,1478
10    33196108    rs80132666    GA    G    764.73    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=6.223;DB;DP=100;FS=0.0;HRun=10;HaplotypeScore=255.9227;IndelType=D;MQ=59.88;MQ0=0;MQRankSum=0.293;QD=7.65;ReadPosRankSum=2.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302278    GT:AD:DP:GQ:PL    0/1:58,41:100:99:804,0,1266
10    33197197    rs1316757    A    C    366.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.43;MQ0=0;MQRankSum=-0.528;QD=13.09;ReadPosRankSum=1.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302278    GT:AD:DP:GQ:PL    0/1:14,14:28:99:396,0,488
10    33200468    rs17851763    G    A    1392.89    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.289;DB;DP=85;Dels=0.0;FS=0.831;HRun=0;HaplotypeScore=0.9973;MQ=47.13;MQ0=0;MQRankSum=-0.351;QD=16.39;ReadPosRankSum=-0.287;SNPEFF_AMINO_ACID_CHANGE=C613;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33200376_33200598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302278    GT:AD:DP:GQ:PL    0/1:35,50:85:99:1423,0,994
10    33201123    rs72784068    A    G    222.65    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.713;DB;DP=23;Dels=0.0;FS=7.499;HRun=2;HaplotypeScore=0.8667;MQ=57.97;MQ0=0;MQRankSum=0.403;QD=9.68;ReadPosRankSum=-0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302278    GT:AD:DP:GQ:PL    0/1:13,10:23:99:253,0,465
10    33209266    rs2230396    G    T    987.39    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.363;DB;DP=64;Dels=0.0;FS=1.017;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=0.304;QD=15.43;ReadPosRankSum=-0.142;SNPEFF_AMINO_ACID_CHANGE=G392;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33209173_33209313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302278    GT:AD:DP:GQ:PL    0/1:28,36:64:99:1017,0,760
10    33211227    rs2230395    T    G    974.70    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=4.646;DB;DP=87;Dels=0.0;FS=2.82;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=11.2;ReadPosRankSum=0.209;SNPEFF_AMINO_ACID_CHANGE=A362;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33211185_33211274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302278    GT:AD:DP:GQ:PL    0/1:47,40:87:99:1005,0,1493
10    33217110    rs2230394    G    A    1213.31    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=0.523;DB;DP=85;Dels=0.0;FS=4.112;HRun=1;HaplotypeScore=0.7887;MQ=59.73;MQ0=0;MQRankSum=-0.11;QD=14.27;ReadPosRankSum=1.077;SNPEFF_AMINO_ACID_CHANGE=Y153;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33217022_33217192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302278    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1243,0,1332
10    33217383    rs2153871    T    A    101.15    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.731;QD=16.86;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414670    GT:AD:DP:GQ:PL    0/1:2,4:6:24.96:131,0,25
10    33219008    rs2256455    T    G    308.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.318;DB;DP=27;Dels=0.0;FS=7.258;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.293;QD=11.43;ReadPosRankSum=-1.976;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414670    GT:AD:DP:GQ:PL    0/1:15,12:27:99:339,0,555
10    33469181    rs1048804    A    G    2181.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_AMINO_ACID_CHANGE=S47;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33468825_33469293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413802    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2214,177,0
10    33471761    rs10633235    G    GCGCACACACACACA    2778.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=289.7491;IndelType=I;MQ=48.06;MQ0=0;QD=92.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    1/1:9,10:30:81.01:2820,81,0
10    33474952    rs2506146    G    C    124.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
10    33481478    rs2243920    A    G    1145.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374814    GT:AD:DP:GQ:PL    1/1:0,31:31:90.28:1178,90,0
10    33483561    rs2474726    T    A    805.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374814    GT:AD:DP:GQ:PL    1/1:0,22:22:66.20:839,66,0
10    33483837    rs149169549    CAT    C    424.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=46.4319;IndelType=D;MQ=60.77;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374814    GT:AD:DP:GQ:PL    1/1:3,11:14:33.11:467,33,0
10    33484266    rs2474725    T    C    254.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374814    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
10    33484577    rs2474724    C    T    1684.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374821    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1718,132,0
10    33484696    rs734187    G    A    247.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374821    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:281,24,0
10    33495306    rs2474715    A    G    1249.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1283,96,0
10    33496681    rs74656391    A    AAG    3337.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.0;HRun=0;HaplotypeScore=167.6151;IndelType=I;MQ=60.53;MQ0=0;QD=47.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    1/1:2,68:69:99:3337,202,0
10    33538292    rs41276086    C    A    432.81    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.357;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.5;QD=11.1;ReadPosRankSum=0.785;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374818    GT:AD:DP:GQ:PL    0/1:23,16:39:99:463,0,760
10    33542835    rs7074620    T    C    298.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
10    33545081    rs11593943    C    T    103.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=0.937;QD=14.82;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    0/1:3,4:7:78.07:134,0,78
10    33545464    rs10827221    G    C    322.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=16.95;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    0/1:8,10:19:99:352,0,272
10    33552696    rs7079053    A    G    2557.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.46;MQ0=0;QD=30.09;SNPEFF_AMINO_ACID_CHANGE=V179A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_33552574_33552801;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2590,208,0
10    33619562    rs1411924    C    T    377.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265371    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
10    34408745    rs3004928    A    C    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346874    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
10    34619946    rs10740885    A    C    208.03    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=17.34;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340077    GT:AD:DP:GQ:PL    0/1:5,7:12:99:238,0,162
10    34620220    rs3781128    C    T    969.33    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.74;DB;DP=67;Dels=0.0;FS=3.898;HRun=0;HaplotypeScore=0.9916;MQ=59.66;MQ0=0;MQRankSum=-0.237;QD=14.47;ReadPosRankSum=-1.084;SNPEFF_AMINO_ACID_CHANGE=S602;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_34620045_34620272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544292    GT:AD:DP:GQ:PL    0/1:35,32:67:99:999,0,981
10    34635579    rs4934629    G    A    35.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.94;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340077    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:66,0,74
10    34635595    rs11009744    G    C    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340077    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,70
10    34649146    rs61735565    G    C    562.64    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.049;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.883;QD=13.08;ReadPosRankSum=-0.498;SNPEFF_AMINO_ACID_CHANGE=T21;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_34648999_34649187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374768    GT:AD:DP:GQ:PL    0/1:22,21:43:99:593,0,674
10    34666864    rs10740890    C    T    1780.07    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.376;DB;DP=148;Dels=0.0;FS=0.641;HRun=1;HaplotypeScore=2.7312;MQ=59.59;MQ0=0;MQRankSum=-0.771;QD=12.03;ReadPosRankSum=1.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340077    GT:AD:DP:GQ:PL    0/1:79,68:148:99:1810,0,2344
10    34688287    rs2796011    G    A    4213.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=59.65;MQ0=0;QD=35.7;SNPEFF_AMINO_ACID_CHANGE=H17;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_34688258_34688341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544292    GT:AD:DP:GQ:PL    1/1:0,118:118:99:4213,307,0
10    34739166    rs982687    T    C    929.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340077    GT:AD:DP:GQ:PL    1/1:0,27:27:72.22:962,72,0
10    34985197    rs72434623    C    CA    584.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.01;DB;DP=34;FS=0.0;HRun=12;HaplotypeScore=157.4408;IndelType=I;MQ=59.13;MQ0=0;MQRankSum=0.722;QD=17.19;ReadPosRankSum=1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340077    GT:AD:DP:GQ:PL    1/1:8,23:34:33.97:626,34,0
10    35300623    rs2001893    G    A    902.08    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=1.151;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8939;MQ=59.63;MQ0=0;MQRankSum=0.295;QD=17.69;ReadPosRankSum=0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:22,29:51:99:932,0,661
10    35302705    rs12830    C    T    321.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.554;DB;DP=24;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.523;QD=13.39;ReadPosRankSum=-0.585;SNPEFF_AMINO_ACID_CHANGE=S580;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_35302627_35302728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374754    GT:AD:DP:GQ:PL    0/1:12,12:24:99:351,0,324
10    35314130    rs139920720    TA    T    145.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=34;FS=7.273;HRun=16;HaplotypeScore=188.6118;IndelType=D;MQ=56.86;MQ0=0;MQRankSum=-0.666;QD=4.29;ReadPosRankSum=-0.321;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:14,15:34:99:185,0,172
10    35320355    rs17582954    T    C    402.76    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=39;Dels=0.0;FS=1.408;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.069;QD=10.33;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:25,14:39:99:433,0,847
10    35320383    rs3740083    C    T    539.54    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.544;DB;DP=51;Dels=0.0;FS=1.212;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.256;QD=10.58;ReadPosRankSum=2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:31,19:51:99:570,0,1065
10    35322024    rs12261654    G    A    344.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=15.68;ReadPosRankSum=-2.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:11,11:22:99:375,0,389
10    35324076    rs2244174    A    G    627.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=27.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:660,51,0
10    35324314    rs35687560    G    A    207    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.154;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.45;MQ0=0;MQRankSum=0.299;QD=13.8;ReadPosRankSum=0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:8,7:15:99:237,0,248
10    35327766    rs2384284    G    T    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.01;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,71
10    35328088    rs11010077    A    G    109.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;MQRankSum=0.53;QD=7.28;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:9,6:15:99:139,0,330
10    35338699    rs7900480    G    A    480.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.917;DB;DP=35;Dels=0.0;FS=1.672;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=13.35;ReadPosRankSum=1.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:20,15:35:99:511,0,592
10    35343497    rs2384288    T    C    431.04    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=28;Dels=0.0;FS=6.455;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.783;QD=15.39;ReadPosRankSum=2.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:15,13:28:99:461,0,435
10    35343525    rs2384289    G    A    382.33    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.168;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.888;QD=18.21;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:9,12:21:99:412,0,315
10    35360310    rs4934711    G    A    166.70    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=7.58;ReadPosRankSum=-0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374742    GT:AD:DP:GQ:PL    0/1:14,8:22:99:197,0,454
10    35426755    rs17499247    A    G    111.47    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.479;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=5.07;ReadPosRankSum=-1.806;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_35426710_35426807;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333809    GT:AD:DP:GQ:PL    0/1:16,6:22:99:141,0,532
10    35467671    rs12260130    C    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333809    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
10    35484949    rs1057108    T    G    267.14    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=15.71;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333809    GT:AD:DP:GQ:PL    0/1:8,9:17:99:297,0,238
10    35894666    rs627267    A    G    165.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321660    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
10    35894761    rs637881    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    35896957    rs595652    G    A    353.98    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9992;MQ=58.78;MQ0=0;MQRankSum=-1.272;QD=18.63;ReadPosRankSum=0.745;SNPEFF_AMINO_ACID_CHANGE=K172;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_35896506_35897863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321660    GT:AD:DP:GQ:PL    0/1:6,13:19:99:384,0,186
10    35930414    rs71003903    G    GC    189.21    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;FS=8.451;HRun=0;HaplotypeScore=24.266;IndelType=I;MQ=58.46;MQ0=0;MQRankSum=1.067;QD=23.65;ReadPosRankSum=0.572;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FZD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374694    GT:AD:DP:GQ:PL    0/1:2,6:8:18.50:228,0,19
10    36811687    .    G    GGT    712.98    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.139;DP=52;FS=0.0;HRun=0;HaplotypeScore=174.455;IndelType=I;MQ=48.82;MQ0=0;MQRankSum=0.572;QD=13.45;ReadPosRankSum=-1.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543053    GT:AD:DP:GQ:PL    0/1:34,18:52:99:752,0,737
10    36812251    rs41276114    C    T    1950.36    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=3.559;DB;DP=151;Dels=0.0;FS=0.601;HRun=3;HaplotypeScore=1.4725;MQ=58.23;MQ0=0;MQRankSum=2.655;QD=12.92;ReadPosRankSum=-0.5;SNPEFF_AMINO_ACID_CHANGE=K304;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_36810649_36813162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440465    GT:AD:DP:GQ:PL    0/1:78,73:151:99:1980,0,2401
10    36812362    rs2503084    C    T    2504.63    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=3.219;DB;DP=174;Dels=0.0;FS=4.611;HRun=0;HaplotypeScore=1.8924;MQ=56.15;MQ0=5;MQRankSum=1.532;QD=14.39;ReadPosRankSum=0.952;SNPEFF_AMINO_ACID_CHANGE=A267;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_36810649_36813162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440465    GT:AD:DP:GQ:PL    0/1:91,83:174:99:2535,0,2454
10    36813180    rs2503083    T    A    1734.89    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.572;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7326;MQ=51.57;MQ0=0;MQRankSum=0.091;QD=15.22;ReadPosRankSum=-1.148;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440465    GT:AD:DP:GQ:PL    0/1:56,58:114:99:1765,0,1629
10    36813198    rs2503082    A    G    2919.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.6;MQ0=0;QD=36.96;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440465    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2953,226,0
10    36813218    rs2505569    C    G    680.28    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=1.691;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=51.11;MQ0=0;MQRankSum=-1.104;QD=13.34;ReadPosRankSum=0.205;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440465    GT:AD:DP:GQ:PL    0/1:29,22:51:99:710,0,904
10    36813298    rs10764092    G    A    132.68    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.69;MQ0=0;MQRankSum=0.361;QD=12.06;ReadPosRankSum=0.361;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAMPTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440465    GT:AD:DP:GQ:PL    0/1:4,7:11:99:163,0,125
10    37419218    rs61737412    C    T    1392.89    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.386;DB;DP=72;Dels=0.0;FS=0.908;HRun=0;HaplotypeScore=0.8321;MQ=59.68;MQ0=0;MQRankSum=0.462;QD=19.35;ReadPosRankSum=-0.088;SNPEFF_AMINO_ACID_CHANGE=T85M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_37419133_37419306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:30,42:72:99:1423,0,830
10    37441072    rs1148257    T    G    1100.18    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.698;DB;DP=86;Dels=0.0;FS=2.323;HRun=0;HaplotypeScore=3.467;MQ=60.0;MQ0=0;MQRankSum=1.257;QD=12.79;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:44,42:86:99:1130,0,1442
10    37447358    rs1200881    T    G    1583.41    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=114;Dels=0.0;FS=8.74;HRun=0;HaplotypeScore=0.8321;MQ=59.79;MQ0=0;MQRankSum=0.672;QD=13.89;ReadPosRankSum=0.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:58,56:114:99:1613,0,1896
10    37451334    rs1200879    A    G    136.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.57;MQ0=0;QD=27.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:169,15,0
10    37451644    rs1200878    T    A    2059.52    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.075;DB;DP=166;Dels=0.0;FS=3.721;HRun=1;HaplotypeScore=2.531;MQ=52.93;MQ0=2;MQRankSum=-6.91;QD=12.41;ReadPosRankSum=0.947;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:85,80:166:99:2090,0,2824
10    37451768    rs41276130    T    G    1646.94    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=1.609;DB;DP=131;Dels=0.0;FS=2.571;HRun=1;HaplotypeScore=7.5472;MQ=57.46;MQ0=0;MQRankSum=3.38;QD=12.57;ReadPosRankSum=-0.921;SNPEFF_AMINO_ACID_CHANGE=L609W;SNPEFF_CODON_CHANGE=tTg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_37451704_37451776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:65,66:131:99:1677,0,2039
10    37451963    rs193125276    A    T    228.18    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.538;DB;DP=33;Dels=0.0;FS=1.47;HRun=6;HaplotypeScore=0.0;MQ=51.1;MQ0=1;MQRankSum=-2.238;QD=6.91;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:20,13:33:99:258,0,548
10    37455426    .    A    G    69.98    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.937;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.93;MQ0=17;MQRankSum=1.754;QD=2.92;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    1/1:20,4:24:11.97:102,12,0
10    37467367    rs1767379    C    T    895.35    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.57;MQ0=4;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    1/1:0,35:35:84.21:928,84,0
10    37478445    rs143202734    G    A    303.56    MQFilter40;QDFilter2    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=3.646;DB;DP=191;Dels=0.0;FS=4.839;HRun=0;HaplotypeScore=1.9532;MQ=18.08;MQ0=31;MQRankSum=-8.658;QD=1.59;ReadPosRankSum=-0.877;SNPEFF_AMINO_ACID_CHANGE=T768;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_37478395_37478485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:72,118:191:99:334,0,1303
10    37478747    rs60969401    A    C    50.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.12;MQ0=2;QD=10.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    1/1:2,3:5:9:83,9,0
10    37485981    rs1200892    G    A    33.65    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.9;MQ0=1;MQRankSum=1.026;QD=6.73;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475522    GT:AD:DP:GQ:PL    0/1:3,2:5:50.46:64,0,50
10    37488689    rs1209750    G    C    2086.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=31.15;SNPEFF_AMINO_ACID_CHANGE=K861N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_37488655_37488716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2120,162,0
10    37490889    rs1200897    G    A    542.55    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=37;Dels=0.0;FS=5.511;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.519;QD=14.66;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:14,23:37:99:573,0,399
10    37505099    rs34285151    C    A    288.58    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=40;Dels=0.0;FS=1.595;HRun=0;HaplotypeScore=1.7234;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=7.21;ReadPosRankSum=-0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361713    GT:AD:DP:GQ:PL    0/1:28,11:40:99:319,0,876
10    37505159    rs34552277    G    A    328.98    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=51;Dels=0.0;FS=4.911;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=6.45;ReadPosRankSum=-0.918;SNPEFF_AMINO_ACID_CHANGE=A1037T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_37505109_37505322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374660    GT:AD:DP:GQ:PL    0/1:37,14:51:99:359,0,1162
10    37505179    rs57914746    T    C    567.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=63;Dels=0.0;FS=2.378;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.684;QD=9.01;ReadPosRankSum=-1.626;SNPEFF_AMINO_ACID_CHANGE=D1043;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_37505109_37505322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374660    GT:AD:DP:GQ:PL    0/1:42,21:63:99:598,0,1456
10    38092975    rs1208681    C    T    758.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;QD=36.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF248;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485560    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:791,60,0
10    38246545    rs2799499    A    G    1124.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302609    GT:AD:DP:GQ:PL    1/1:0,30:30:87.26:1158,87,0
10    38260558    rs72101533    AACACAC    A    802.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=295.747;IndelType=D;MQ=49.46;MQ0=0;QD=17.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302609    GT:AD:DP:GQ:PL    1/1:25,19:46:49.02:845,49,0
10    38299843    rs2293962    G    T    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF33A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277672    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
10    38301487    rs77733567    G    C    33.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.75;MQ0=0;QD=11.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF33A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277672    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:65,6,0
10    38306079    rs2738207    T    C    446.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.76;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF33A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265892    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:480,36,0
10    38306128    rs2738208    A    G    804.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=27.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF33A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265892    GT:AD:DP:GQ:PL    1/1:0,29:29:69.21:837,69,0
10    38343260    rs2472160    G    A    1513.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF33A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277672    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1547,114,0
10    38344700    rs2505232    C    G    2879.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=Q549E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_38343306_38345488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF33A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307441    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2913,223,0
10    38385441    rs2474573    G    A    317.44    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.824;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.317;QD=13.23;ReadPosRankSum=-1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF37A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498773    GT:AD:DP:GQ:PL    0/1:13,11:24:99:347,0,342
10    38403974    rs176886    C    T    110.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.08;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF37A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351773    GT:AD:DP:GQ:PL    0/1:1,4:5:24.27:140,0,24
10    38406161    rs176888    C    A    119.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.94;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF37A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477790    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:150,0,25
10    38407519    rs176889    A    G    148.57    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.947;DB;DP=34;Dels=0.0;FS=3.157;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.115;QD=4.37;ReadPosRankSum=-1.191;SNPEFF_AMINO_ACID_CHANGE=S480;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_38406318_38412276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF37A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351773    GT:AD:DP:GQ:PL    0/1:24,10:34:99:179,0,790
10    38651190    rs144318167    C    G    2980.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.052;DB;DP=102;Dels=0.0;FS=4.23;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=1.067;QD=29.22;ReadPosRankSum=-0.507;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=HSD17B7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277668    GT:AD:DP:GQ:PL    1/1:1,101:102:99:3013,206,0
10    38897339    rs113179129    T    A    32.16    QDFilter2    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.171;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=53.31;MQ0=2;MQRankSum=-1.437;QD=1.29;ReadPosRankSum=-1.637;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:16,9:25:62.15:62,0,533
10    38897455    .    T    G    132.97    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DP=32;Dels=0.0;FS=7.204;HRun=0;HaplotypeScore=0.0;MQ=50.31;MQ0=1;MQRankSum=-4.266;QD=4.16;ReadPosRankSum=-0.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:22,10:32:99:163,0,585
10    38897463    rs76558209    C    T    162.13    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=1.632;DB;DP=38;Dels=0.0;FS=3.89;HRun=1;HaplotypeScore=0.9995;MQ=50.53;MQ0=1;MQRankSum=-4.33;QD=4.27;ReadPosRankSum=-0.109;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:26,11:38:99:192,0,631
10    38897470    rs76496433    T    A    152.54    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=39;Dels=0.0;FS=3.851;HRun=0;HaplotypeScore=0.9995;MQ=50.79;MQ0=1;MQRankSum=-4.554;QD=3.91;ReadPosRankSum=-0.435;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:28,11:39:99:183,0,719
10    38897479    rs80166822    C    T    182.03    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.801;DB;DP=40;Dels=0.0;FS=5.447;HRun=0;HaplotypeScore=0.734;MQ=48.78;MQ0=2;MQRankSum=-4.883;QD=4.55;ReadPosRankSum=-1.411;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:26,14:40:99:212,0,820
10    38897539    rs76966281    T    C    320.21    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=50.55;MQ0=1;MQRankSum=-4.778;QD=6.67;ReadPosRankSum=1.269;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:30,17:48:99:350,0,958
10    38897541    rs79482073    G    A    342.40    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.65;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=50.76;MQ0=1;MQRankSum=-5.063;QD=6.99;ReadPosRankSum=1.695;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:32,17:49:99:372,0,983
10    38897584    rs61841293    G    A    204.04    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.057;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9562;MQ=50.55;MQ0=0;MQRankSum=-3.114;QD=6.18;ReadPosRankSum=-1.351;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:23,10:33:99:234,0,700
10    38897692    .    C    T    40.24    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.41;MQ0=0;MQRankSum=-1.708;QD=3.66;ReadPosRankSum=-1.377;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:8,3:11:70.23:70,0,202
10    38897697    rs112170342    C    T    43.23    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.27;MQ0=0;MQRankSum=-2.034;QD=3.6;ReadPosRankSum=-0.925;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429313    GT:AD:DP:GQ:PL    0/1:9,3:12:73.22:73,0,182
10    38938224    rs112820332    A    G    52.94    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=29.03;MQ0=4;MQRankSum=-1.221;QD=4.41;ReadPosRankSum=0.956;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:5,7:12:82.93:83,0,157
10    38938279    rs149465072    A    C    75.29    MQFilter40;QDFilter2    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=17.71;MQ0=28;MQRankSum=-0.633;QD=1.98;ReadPosRankSum=-0.741;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:25,13:38:99:105,0,182
10    38939433    rs144801287    A    T    60.68    MQFilter40;QDFilter2    AB=0.944;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.135;DB;DP=250;DS;Dels=0.0;FS=5.105;HRun=2;HaplotypeScore=8.6147;MQ=12.31;MQ0=177;MQRankSum=1.828;QD=0.24;ReadPosRankSum=0.503;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:236,14:250:90.67:91,0,1047
10    38939435    rs61839272    T    C    305.21    MQFilter40;QDFilter2    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=3.725;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.4034;MQ=12.36;MQ0=176;MQRankSum=-0.71;QD=1.23;ReadPosRankSum=3.171;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:154,94:249:99:335,0,776
10    38939447    rs142016242    CAAT    C    197.12    QDFilter2    AB=0.954;AC=1;AF=0.50;AN=2;BaseQRankSum=1.673;DB;DP=40;DS;FS=2.509;HRun=0;HaplotypeScore=253.6161;IndelType=D;MQ=11.71;MQ0=185;MQRankSum=1.175;QD=0.79;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:238,12:40:99:236,0,2154
10    38939503    rs4436477    A    G    186.62    MQFilter40;QDFilter2    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.94;DB;DP=228;DS;Dels=0.0;FS=2.551;HRun=1;HaplotypeScore=0.0;MQ=12.19;MQ0=168;MQRankSum=-1.065;QD=0.82;ReadPosRankSum=-2.384;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:151,77:228:99:217,0,855
10    38939542    rs4474366    T    C    40.84    MQFilter40;QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=203;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.891;MQ=14.68;MQ0=140;MQRankSum=-0.121;QD=0.2;ReadPosRankSum=1.141;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:159,44:203:70.83:71,0,905
10    38939571    .    C    G    103.13    MQFilter40;QDFilter2    AB=0.898;AC=1;AF=0.50;AN=2;BaseQRankSum=2.234;DP=176;DS;Dels=0.0;FS=1.695;HRun=0;HaplotypeScore=12.7096;MQ=22.91;MQ0=88;MQRankSum=-0.024;QD=0.59;ReadPosRankSum=1.094;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:158,18:176:99:133,0,1761
10    38939579    rs4436478    A    C    858.59    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.678;DB;DP=165;Dels=0.0;FS=4.488;HRun=0;HaplotypeScore=12.7096;MQ=24.02;MQ0=77;MQRankSum=1.128;QD=5.2;ReadPosRankSum=-0.847;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:97,68:165:99:889,0,1047
10    38939592    rs147333577    A    G    56.95    MQFilter40;QDFilter2    AB=0.888;AC=1;AF=0.50;AN=2;BaseQRankSum=0.599;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7699;MQ=25.77;MQ0=61;MQRankSum=-1.02;QD=0.4;ReadPosRankSum=1.265;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:127,16:143:86.94:87,0,1915
10    38939619    rs139346722    TC    T    844.47    PASS    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=2.804;DB;DP=67;FS=3.027;HRun=3;HaplotypeScore=406.7017;IndelType=D;MQ=33.21;MQ0=14;MQRankSum=0.838;QD=9.6;ReadPosRankSum=1.617;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:53,35:67:99:884,0,1358
10    38939633    .    T    C    92.03    MQFilter40;QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.985;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.6798;MQ=37.34;MQ0=3;MQRankSum=0.104;QD=1.35;ReadPosRankSum=0.047;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:59,9:68:99:122,0,1874
10    38939687    rs4450108    G    A    146.25    MQFilter40    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=32.83;MQ0=2;MQRankSum=0.678;QD=11.25;ReadPosRankSum=-1.034;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:4,9:13:99:176,0,130
10    38943240    rs2310264    G    A    48.06    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.85;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.79;MQ0=0;MQRankSum=-2.729;QD=3.0;ReadPosRankSum=1.273;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:12,4:16:78.06:78,0,368
10    38943244    rs2310263    T    A    93.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.69;MQ0=0;MQRankSum=-3.231;QD=5.22;ReadPosRankSum=-0.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:12,6:18:99:124,0,446
10    38943289    rs143519584    A    T    372.82    MQFilter40    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.937;DB;DP=47;Dels=0.0;FS=3.84;HRun=1;HaplotypeScore=0.0;MQ=39.99;MQ0=0;MQRankSum=-3.991;QD=7.93;ReadPosRankSum=0.183;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:27,20:47:99:403,0,947
10    38943293    rs113601672    G    A    374.76    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=48;Dels=0.0;FS=3.711;HRun=1;HaplotypeScore=0.0;MQ=39.19;MQ0=0;MQRankSum=-4.26;QD=7.81;ReadPosRankSum=0.208;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:27,21:48:99:405,0,909
10    38943320    rs114697077    T    C    512.53    MQFilter40    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=69;Dels=0.0;FS=4.573;HRun=0;HaplotypeScore=0.6651;MQ=39.2;MQ0=0;MQRankSum=-4.848;QD=7.43;ReadPosRankSum=2.235;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:43,26:69:99:543,0,1376
10    38977926    rs61842165    A    T    2560.17    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=6.36;DB;DP=215;Dels=0.0;FS=1.806;HRun=1;HaplotypeScore=4.4488;MQ=41.1;MQ0=17;MQRankSum=-9.876;QD=11.91;ReadPosRankSum=1.023;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:82,133:215:99:2590,0,2472
10    38977944    rs61842166    T    G    2254.55    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=2.569;DB;DP=224;Dels=0.0;FS=1.502;HRun=0;HaplotypeScore=3.903;MQ=40.34;MQ0=23;MQRankSum=-10.716;QD=10.06;ReadPosRankSum=0.369;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:89,135:224:99:2285,0,2765
10    38978000    rs75870011    A    G    1909.15    MQFilter40    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.466;DB;DP=250;DS;Dels=0.0;FS=4.258;HRun=0;HaplotypeScore=4.6796;MQ=39.49;MQ0=26;MQRankSum=-8.685;QD=7.64;ReadPosRankSum=-1.404;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:108,142:250:99:1939,0,3269
10    38978099    rs61842167    T    C    1811.86    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=3.206;DB;DP=205;DS;Dels=0.0;FS=14.918;HRun=0;HaplotypeScore=0.5784;MQ=43.44;MQ0=16;MQRankSum=-10.914;QD=8.84;ReadPosRankSum=-0.942;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:96,109:205:99:1842,0,3042
10    38978124    rs78243982    A    C    696    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=1.199;DB;DP=151;DS;Dels=0.0;FS=19.995;HRun=0;HaplotypeScore=1.9512;MQ=44.68;MQ0=17;MQRankSum=-9.526;QD=4.61;ReadPosRankSum=0.883;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:81,69:151:99:726,0,2691
10    38978169    rs76170402    A    C    79.06    QDFilter2    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.593;DB;DP=50;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.5166;MQ=51.86;MQ0=1;MQRankSum=-5.173;QD=1.58;ReadPosRankSum=-2.453;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:37,13:50:99:109,0,1306
10    38978223    rs79677165    T    C    105.78    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.17;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.56;MQ0=0;MQRankSum=-2.808;QD=5.88;ReadPosRankSum=0.815;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:11,7:18:99:136,0,379
10    38978243    rs78969672    A    G    122.23    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.96;MQ0=0;MQRankSum=-1.67;QD=9.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:8,5:13:99:152,0,272
10    38978275    rs78152252    A    T    82.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.09;MQ0=0;MQRankSum=-0.741;QD=8.27;ReadPosRankSum=-1.568;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416231    GT:AD:DP:GQ:PL    0/1:6,4:10:99:113,0,200
10    39011138    rs2208481    G    A    1277.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=52.54;MQ0=0;QD=31.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-453N3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423877    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1310,102,0
10    42680847    rs4619104    C    T    32.97    MQFilter40;QDFilter2    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=1.886;DB;DP=246;Dels=0.0;FS=2.207;HRun=1;HaplotypeScore=0.0;MQ=16.03;MQ0=142;MQRankSum=-5.059;QD=0.13;ReadPosRankSum=-0.722;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL031601.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442306    GT:AD:DP:GQ:PL    0/1:106,140:246:62.96:63,0,1014
10    42680864    rs10751397    A    G    681.27    MQFilter40    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=2.516;DB;DP=249;DS;Dels=0.0;FS=30.682;HRun=0;HaplotypeScore=0.0;MQ=13.55;MQ0=138;MQRankSum=3.471;QD=2.73;ReadPosRankSum=1.077;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL031601.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442306    GT:AD:DP:GQ:PL    0/1:176,73:249:99:711,0,120
10    42746628    rs192416793    A    C    1598.50    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.517;DB;DP=177;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6421;MQ=40.01;MQ0=25;MQRankSum=0.348;QD=9.03;ReadPosRankSum=-0.009;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:100,77:177:99:1628,0,2036
10    42771932    rs72785941    T    A    158.39    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.56;MQ0=0;MQRankSum=-3.532;QD=8.8;ReadPosRankSum=0.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PABPC1P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452851    GT:AD:DP:GQ:PL    0/1:11,7:18:99:188,0,401
10    42771957    rs74135556    T    A    134.18    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=0.802;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.58;MQ0=0;MQRankSum=-3.901;QD=4.97;ReadPosRankSum=1.798;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PABPC1P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452851    GT:AD:DP:GQ:PL    0/1:20,7:27:99:164,0,699
10    42771993    rs61043521    G    A    61.85    QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.427;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.46;MQ0=0;MQRankSum=-3.915;QD=1.55;ReadPosRankSum=-1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PABPC1P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452851    GT:AD:DP:GQ:PL    0/1:33,7:40:91.84:92,0,1160
10    42772365    rs7093311    C    T    951.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.54;MQ0=0;QD=33.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PABPC1P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452851    GT:AD:DP:GQ:PL    1/1:0,28:28:78.20:984,78,0
10    42832147    .    G    T    87.17    QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.802;DP=98;Dels=0.0;FS=32.757;HRun=0;HaplotypeScore=0.0;MQ=53.56;MQ0=2;MQRankSum=-6.129;QD=0.89;ReadPosRankSum=-0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:80,17:98:99:117,0,2721
10    42832186    .    G    A    194.49    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.243;DP=91;Dels=0.0;FS=16.389;HRun=0;HaplotypeScore=2.482;MQ=51.77;MQ0=2;MQRankSum=-6.653;QD=2.14;ReadPosRankSum=1.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:70,21:91:99:224,0,2365
10    42832196    .    G    C    245.05    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=4.092;DP=91;Dels=0.0;FS=2.272;HRun=1;HaplotypeScore=3.0776;MQ=51.6;MQ0=1;MQRankSum=-6.856;QD=2.69;ReadPosRankSum=0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:68,23:91:99:275,0,2146
10    42832205    .    C    A    205.64    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.685;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4405;MQ=52.47;MQ0=0;MQRankSum=-6.161;QD=2.48;ReadPosRankSum=0.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:61,21:83:99:236,0,2185
10    42832213    .    T    C    244.95    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=3.934;DP=79;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=3.8488;MQ=52.0;MQ0=0;MQRankSum=-6.187;QD=3.1;ReadPosRankSum=-0.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:58,21:79:99:275,0,2047
10    42832258    rs73253652    C    T    650.62    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=2.903;DB;DP=95;Dels=0.0;FS=9.739;HRun=0;HaplotypeScore=0.5784;MQ=51.47;MQ0=0;MQRankSum=-6.942;QD=6.85;ReadPosRankSum=1.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:63,31:95:99:681,0,1863
10    42832294    rs76173391    T    C    449.36    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=2.161;DB;DP=85;Dels=0.0;FS=2.143;HRun=1;HaplotypeScore=3.9995;MQ=51.36;MQ0=0;MQRankSum=-5.841;QD=5.29;ReadPosRankSum=0.628;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:62,23:85:99:479,0,2066
10    42832327    .    T    G    36.31    QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.502;DP=91;Dels=0.0;FS=5.389;HRun=0;HaplotypeScore=0.7887;MQ=52.52;MQ0=0;MQRankSum=-4.279;QD=0.4;ReadPosRankSum=-1.662;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:80,11:91:66.31:66,0,2740
10    42832578    rs2466466    G    T    1400.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=53.68;MQ0=1;QD=33.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1433,108,0
10    42833132    rs58396160    CATT    C    2322.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=209.1709;IndelType=D;MQ=53.28;MQ0=0;QD=48.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    1/1:1,47:46:99:2365,132,0
10    42833255    .    C    T    1190.37    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=49.92;MQ0=0;MQRankSum=1.17;QD=14.17;ReadPosRankSum=1.926;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:41,42:84:99:1220,0,1231
10    42833336    rs187545542    A    C    1291.92    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.999;DB;DP=112;Dels=0.0;FS=3.651;HRun=0;HaplotypeScore=0.0;MQ=51.73;MQ0=1;MQRankSum=1.579;QD=11.53;ReadPosRankSum=0.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-313J2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423987    GT:AD:DP:GQ:PL    0/1:65,47:112:99:1322,0,2010
10    42905431    rs3004228    A    T    356.46    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.246;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.508;QD=15.5;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:11,12:23:99:386,0,358
10    42905510    rs2419684    A    C    1033.45    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.501;QD=14.98;ReadPosRankSum=-1.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1063,0,939
10    42905741    rs2505858    T    C    959.73    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=2.499;DB;DP=53;Dels=0.0;FS=2.656;HRun=0;HaplotypeScore=0.0;MQ=58.77;MQ0=0;MQRankSum=1.147;QD=18.11;ReadPosRankSum=-1.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:17,36:53:99:990,0,445
10    42907201    rs2505860    G    A    1425.59    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.344;DB;DP=87;Dels=0.0;FS=4.139;HRun=0;HaplotypeScore=4.4597;MQ=60.0;MQ0=0;MQRankSum=-0.926;QD=16.39;ReadPosRankSum=-1.361;SNPEFF_AMINO_ACID_CHANGE=N307;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_42907147_42907309;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:39,48:87:99:1456,0,1157
10    42907260    rs2505861    T    C    768.17    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.805;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.797;QD=13.72;ReadPosRankSum=-0.501;SNPEFF_AMINO_ACID_CHANGE=I288V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_42907147_42907309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:26,30:56:99:798,0,882
10    42920832    rs2505872    G    A    1279.07    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.606;DB;DP=72;Dels=0.0;FS=12.826;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.559;QD=17.76;ReadPosRankSum=-1.347;SNPEFF_AMINO_ACID_CHANGE=I193;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_42920766_42920885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:29,43:72:99:1309,0,866
10    42920884    rs2489720    C    T    1061.89    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.438;DB;DP=65;Dels=0.0;FS=3.665;HRun=4;HaplotypeScore=3.3861;MQ=60.0;MQ0=0;MQRankSum=-0.368;QD=16.34;ReadPosRankSum=-0.438;SNPEFF_AMINO_ACID_CHANGE=R176Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_42920766_42920885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:28,36:65:99:1092,0,790
10    42922839    rs146239534    T    C    63.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=15.85;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:93,0,27
10    42928605    rs2000380    T    G    768.89    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.968;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=59.84;MQ0=0;MQRankSum=-0.36;QD=13.49;ReadPosRankSum=-2.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:26,31:57:99:799,0,911
10    42941685    rs35468240    T    TA    170.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;FS=0.0;HRun=5;HaplotypeScore=20.7176;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=18.98;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426433    GT:AD:DP:GQ:PL    0/1:3,6:9:69.66:210,0,70
10    43062433    rs210224    G    A    751.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.83;MQ0=0;QD=32.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=EIF3LP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457262    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:784,60,0
10    43089965    rs210280    G    A    2215.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=38.2;SNPEFF_AMINO_ACID_CHANGE=R111C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_43087991_43090141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF33B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395836    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2249,166,0
10    43128395    rs209391    C    G    304.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF33B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486614    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:337,27,0
10    43132156    rs209388    C    T    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF33B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486614    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    43132232    rs209387    A    G    279.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF33B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486614    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:313,24,0
10    43280057    rs5784577    CTT    C    2928.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.0;HRun=7;HaplotypeScore=313.583;IndelType=D;MQ=57.07;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374518    GT:AD:DP:GQ:PL    1/1:2,79:81:99:2971,235,0
10    43595781    rs2565206    G    T    135.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=16.99;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    0/1:3,5:8:99:166,0,104
10    43595836    rs71016725    A    AT    172.22    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=25;FS=0.0;HRun=14;HaplotypeScore=189.9006;IndelType=I;MQ=55.21;MQ0=0;MQRankSum=-0.277;QD=6.89;ReadPosRankSum=-1.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    0/1:3,11:25:50.58:211,0,51
10    43595968    rs1800858    A    G    1505.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=30.11;SNPEFF_AMINO_ACID_CHANGE=A45;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_43595907_43596170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1538,120,0
10    43600689    rs2435352    A    G    361.74    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.394;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.986;QD=19.04;ReadPosRankSum=1.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    0/1:6,13:19:99:392,0,113
10    43601749    rs2742243    T    C    211.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:245,18,0
10    43604390    rs1864404    A    T    440.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479913    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:474,36,0
10    43606687    rs1800860    A    G    1780.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.61;MQ0=0;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=A432;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_43606655_43606913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1813,144,0
10    43611865    rs2256550    T    C    500.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498820    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:534,42,0
10    43612226    rs760466    C    T    746.15    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.328;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6806;MQ=59.49;MQ0=0;MQRankSum=-1.415;QD=16.58;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498820    GT:AD:DP:GQ:PL    0/1:16,28:45:99:776,0,308
10    43613843    rs1800861    G    T    874.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_AMINO_ACID_CHANGE=L769;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_43613821_43613928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:908,69,0
10    43615505    rs77728439    G    A    149.44    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=13.59;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    0/1:5,6:11:99:179,0,153
10    43620551    rs2742236    G    A    295.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    1/1:0,9:9:27.04:329,27,0
10    43622217    rs2075912    T    C    317.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355710    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:351,27,0
10    43623812    rs17028    C    T    142.98    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=11.0;ReadPosRankSum=-0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RET;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340058    GT:AD:DP:GQ:PL    0/1:8,5:13:99:173,0,141
10    43654515    rs2435341    T    A    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374464    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
10    43657811    rs2257767    T    G    1486.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7465;MQ=58.95;MQ0=0;QD=33.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374464    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1519,126,0
10    43659536    rs2503865    C    T    936.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374464    GT:AD:DP:GQ:PL    1/1:0,32:32:72.20:970,72,0
10    43671378    rs112253756    GT    G    1661.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.65;DB;DP=93;FS=0.0;HRun=13;HaplotypeScore=266.0447;IndelType=D;MQ=60.2;MQ0=0;MQRankSum=-0.371;QD=17.87;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374466    GT:AD:DP:GQ:PL    1/1:11,78:93:99:1704,217,0
10    43678796    rs2435381    C    T    1952.63    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.724;DB;DP=152;Dels=0.0;FS=2.055;HRun=2;HaplotypeScore=3.4803;MQ=59.54;MQ0=0;MQRankSum=-1.054;QD=12.85;ReadPosRankSum=1.125;SNPEFF_AMINO_ACID_CHANGE=P479S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_43678698_43680756;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSGALNACT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374466    GT:AD:DP:GQ:PL    0/1:80,72:152:99:1983,0,2548
10    44103923    rs3128239    G    C    52.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF485;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    44111806    rs10899839    G    A    640.80    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.37;MQ0=0;MQRankSum=-0.191;QD=14.9;ReadPosRankSum=-1.156;SNPEFF_AMINO_ACID_CHANGE=L105;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_44111739_44113351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF485;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361807    GT:AD:DP:GQ:PL    0/1:19,24:43:99:671,0,541
10    44112245    rs12354886    G    A    1494.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=A161T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_44111739_44113035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF485;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374437    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1528,114,0
10    44340865    rs4948785    G    A    543.62    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.902;DB;DP=37;Dels=0.0;FS=4.815;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.623;QD=14.69;ReadPosRankSum=-0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf136;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374432    GT:AD:DP:GQ:PL    0/1:18,19:37:99:574,0,599
10    44341072    rs10535963    CATTGATT    C    446.45    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=3.011;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=154.9587;IndelType=D;MQ=50.76;MQ0=0;MQRankSum=-2.615;QD=19.41;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf136;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374432    GT:AD:DP:GQ:PL    0/1:16,7:23:99:485,0,1450
10    44868856    rs266091    A    C    44.73    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.37;QD=3.73;ReadPosRankSum=0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343575    GT:AD:DP:GQ:PL    0/1:9,3:12:74.73:75,0,296
10    44874253    rs266085    C    T    240.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.208;QD=15.04;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488591    GT:AD:DP:GQ:PL    0/1:8,8:16:99:271,0,277
10    45423160    rs10900130    T    C    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389583    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
10    45423282    rs10900131    C    G    301.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.693;DB;DP=26;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.6651;MQ=58.2;MQ0=0;MQRankSum=1.747;QD=11.61;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389583    GT:AD:DP:GQ:PL    0/1:15,10:26:99:332,0,435
10    45430462    rs17417442    C    T    1410.36    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.057;DB;DP=90;Dels=0.0;FS=15.068;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.457;QD=15.67;ReadPosRankSum=-0.07;SNPEFF_AMINO_ACID_CHANGE=A118;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_45430104_45430642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM72;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544540    GT:AD:DP:GQ:PL    0/1:46,44:90:99:1440,0,1200
10    45430699    rs7067692    A    G    74.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460364    GT:AD:DP:GQ:PL    1/1:0,3:3:9:106,9,0
10    45467447    rs882845    T    A    74.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298295    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
10    45473552    rs11818604    C    T    68.47    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=57.39;MQ0=0;MQRankSum=-0.361;QD=7.61;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298295    GT:AD:DP:GQ:PL    0/1:5,4:9:98.47:98,0,141
10    45496120    rs12269028    A    T    341.16    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=32;Dels=0.0;FS=5.523;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=10.66;ReadPosRankSum=-0.717;SNPEFF_AMINO_ACID_CHANGE=I63N;SNPEFF_CODON_CHANGE=aTt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_45495978_45496336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298298    GT:AD:DP:GQ:PL    0/1:15,17:32:99:371,0,432
10    45602500    rs12413346    G    A    947.83    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.883;DB;DP=70;Dels=0.0;FS=3.285;HRun=0;HaplotypeScore=0.0;MQ=54.26;MQ0=0;MQRankSum=1.612;QD=13.54;ReadPosRankSum=0.965;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-445N18.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423875    GT:AD:DP:GQ:PL    0/1:37,33:70:99:978,0,1059
10    45689582    rs10732899    G    A    1500.19    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=4.421;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=-0.754;QD=11.81;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:70,57:127:99:1530,0,2032
10    45920705    rs3780903    C    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374391    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    45924023    rs1565096    G    A    661.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=36.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483623    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:694,51,0
10    45924256    rs1565097    T    C    897.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483623    GT:AD:DP:GQ:PL    1/1:0,30:30:81.18:931,81,0
10    45935744    rs3780914    C    T    37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.25;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374391    GT:AD:DP:GQ:PL    0/1:2,2:4:66.99:67,0,70
10    45939136    rs7900977    T    C    471.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=27.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475300    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:504,39,0
10    45953767    rs7908745    A    G    985.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.329;DB;DP=67;Dels=0.0;FS=2.171;HRun=0;HaplotypeScore=1.399;MQ=58.96;MQ0=0;MQRankSum=-0.348;QD=14.7;ReadPosRankSum=-0.689;SNPEFF_AMINO_ACID_CHANGE=Y266H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_45952817_45953991;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319836    GT:AD:DP:GQ:PL    0/1:33,33:67:99:1015,0,1095
10    45954807    rs2279433    A    G    310.99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.905;DB;DP=28;Dels=0.0;FS=6.232;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.441;QD=11.11;ReadPosRankSum=-0.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453980    GT:AD:DP:GQ:PL    0/1:16,12:28:99:341,0,458
10    45956828    rs3764990    G    A    181.30    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2071;MQ=58.13;MQ0=0;MQRankSum=-0.718;QD=7.25;ReadPosRankSum=-1.55;SNPEFF_AMINO_ACID_CHANGE=P92S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_45956679_45956859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319836    GT:AD:DP:GQ:PL    0/1:11,14:25:99:211,0,361
10    45958676    rs17157825    G    A    892.91    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.71;MQ0=0;MQRankSum=0.805;QD=13.95;ReadPosRankSum=0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319836    GT:AD:DP:GQ:PL    0/1:31,33:64:99:923,0,907
10    45958881    rs2291429    A    G    267.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=18;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=57.12;MQ0=0;MQRankSum=0.048;QD=14.85;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319836    GT:AD:DP:GQ:PL    0/1:9,9:18:99:297,0,238
10    45959385    rs12769244    G    A    879.29    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.867;DB;DP=53;Dels=0.0;FS=2.623;HRun=1;HaplotypeScore=1.3123;MQ=58.32;MQ0=0;MQRankSum=0.277;QD=16.59;ReadPosRankSum=-0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319836    GT:AD:DP:GQ:PL    0/1:24,29:53:99:909,0,661
10    45959652    rs12771275    C    A    784.83    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.603;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.616;QD=15.7;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319836    GT:AD:DP:GQ:PL    0/1:23,27:50:99:815,0,718
10    46111716    rs74699241    A    T    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374370    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    46111950    rs1060848    A    G    637.18    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=43;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.8667;MQ=58.37;MQ0=0;MQRankSum=1.971;QD=14.82;ReadPosRankSum=-0.051;SNPEFF_AMINO_ACID_CHANGE=S588;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46111833_46112019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374370    GT:AD:DP:GQ:PL    0/1:20,23:43:99:667,0,577
10    46112031    rs75205426    A    G    352.52    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.113;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=58.95;MQ0=0;MQRankSum=-0.322;QD=8.01;ReadPosRankSum=-0.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484333    GT:AD:DP:GQ:PL    0/1:26,18:44:99:383,0,838
10    46120003    rs41301627    A    G    387.07    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=26;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.953;QD=14.89;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344646    GT:AD:DP:GQ:PL    0/1:12,14:26:99:417,0,377
10    46135215    rs41301629    C    T    925.36    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.548;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.601;QD=15.68;ReadPosRankSum=0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344646    GT:AD:DP:GQ:PL    0/1:27,32:59:99:955,0,867
10    46143621    rs74595557    T    C    109.43    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.729;QD=12.16;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335258    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,174
10    46143708    rs113970763    GACAAC    G    851.57    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=3.969;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=161.4992;IndelType=D;MQ=57.91;MQ0=0;MQRankSum=-0.943;QD=29.36;ReadPosRankSum=-0.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335258    GT:AD:DP:GQ:PL    0/1:13,16:29:99:891,0,1124
10    46144136    rs76232026    A    G    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=1.026;QD=10.61;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335258    GT:AD:DP:GQ:PL    0/1:2,2:4:70.61:72,0,71
10    46147080    rs17768650    G    C    794.99    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.357;DB;DP=71;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=0.5784;MQ=59.35;MQ0=0;MQRankSum=1.164;QD=11.2;ReadPosRankSum=0.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANUBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335258    GT:AD:DP:GQ:PL    0/1:42,29:71:99:825,0,1361
10    46174369    .    T    G    654.48    MQFilter40    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=6.157;DP=243;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8499;MQ=31.28;MQ0=58;MQRankSum=-10.855;QD=2.69;ReadPosRankSum=-0.297;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454844    GT:AD:DP:GQ:PL    0/1:96,146:243:99:684,0,2827
10    46177295    .    C    T    354.89    MQFilter40    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=2.612;DP=166;Dels=0.0;FS=19.638;HRun=0;HaplotypeScore=0.0;MQ=12.01;MQ0=133;MQRankSum=1.459;QD=2.14;ReadPosRankSum=-0.594;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454844    GT:AD:DP:GQ:PL    0/1:112,54:166:99:385,0,291
10    46187373    .    A    T    358.80    MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.86;MQ0=50;MQRankSum=1.581;QD=4.85;ReadPosRankSum=0.589;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454844    GT:AD:DP:GQ:PL    0/1:50,24:74:99:389,0,235
10    46187541    .    T    C    2491.07    MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.742;DP=250;DS;Dels=0.0;FS=1.827;HRun=0;HaplotypeScore=0.0;MQ=35.55;MQ0=60;MQRankSum=-0.512;QD=9.96;ReadPosRankSum=-1.822;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454844    GT:AD:DP:GQ:PL    0/1:136,114:250:99:2521,0,2726
10    46187548    .    G    C    2590.15    MQFilter40    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.586;DP=247;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=37.34;MQ0=48;MQRankSum=-1.429;QD=10.49;ReadPosRankSum=-0.916;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454844    GT:AD:DP:GQ:PL    0/1:136,111:247:99:2620,0,2852
10    46194552    .    G    A    615.86    MQFilter40    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=5.705;DP=239;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=13.61;MQ0=173;MQRankSum=1.066;QD=2.58;ReadPosRankSum=-1.927;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454844    GT:AD:DP:GQ:PL    0/1:194,45:239:99:646,0,531
10    46195321    rs79538027    T    G    149.48    QDFilter2    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.959;DB;DP=109;Dels=0.0;FS=13.225;HRun=0;HaplotypeScore=0.734;MQ=41.4;MQ0=10;MQRankSum=-6.98;QD=1.37;ReadPosRankSum=3.719;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454844    GT:AD:DP:GQ:PL    0/1:78,31:109:99:179,0,2626
10    46201929    rs2806481    T    C    79.77    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.405;DB;DP=134;Dels=0.0;FS=27.076;HRun=0;HaplotypeScore=0.7887;MQ=47.12;MQ0=3;MQRankSum=-7.432;QD=0.6;ReadPosRankSum=-0.233;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-358L16.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426241    GT:AD:DP:GQ:PL    0/1:108,26:134:99:110,0,3744
10    46210751    rs17696112    C    T    1019.16    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.756;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.74;MQ0=0;MQRankSum=-0.561;QD=14.56;ReadPosRankSum=-0.452;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-358L16.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426241    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1049,0,958
10    46214622    rs144210692    G    A    179.97    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.574;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=35.97;MQ0=1;MQRankSum=0.709;QD=8.18;ReadPosRankSum=-1.007;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-358L16.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426241    GT:AD:DP:GQ:PL    0/1:14,8:22:99:210,0,421
10    46215431    rs2442927    A    G    2023.79    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.004;DB;DP=187;DS;Dels=0.0;FS=6.916;HRun=2;HaplotypeScore=4.7191;MQ=47.62;MQ0=3;MQRankSum=-0.68;QD=10.82;ReadPosRankSum=0.959;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-358L16.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426241    GT:AD:DP:GQ:PL    0/1:101,84:187:99:2054,0,3025
10    46216415    rs17159113    A    G    1435.81    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.85;MQ0=0;MQRankSum=2.175;QD=16.7;ReadPosRankSum=-0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-671E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424552    GT:AD:DP:GQ:PL    0/1:36,50:86:99:1466,0,1154
10    46217154    rs114758980    C    A    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-671E7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424552    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
10    46224381    rs17157971    C    T    2004.37    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=215;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9991;MQ=48.53;MQ0=8;MQRankSum=0.611;QD=9.32;ReadPosRankSum=-1.057;SNPEFF_AMINO_ACID_CHANGE=D66;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46224310_46224474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336378    GT:AD:DP:GQ:PL    0/1:127,87:215:99:2034,0,3291
10    46233649    rs17159059    C    T    104.88    MQFilter40    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=37.55;MQ0=0;MQRankSum=1.065;QD=5.52;ReadPosRankSum=1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336378    GT:AD:DP:GQ:PL    0/1:14,5:19:99:135,0,412
10    46242038    rs2446526    A    C    332.29    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=6.195;DB;DP=134;Dels=0.0;FS=5.841;HRun=3;HaplotypeScore=1.4942;MQ=45.3;MQ0=12;MQRankSum=-8.036;QD=2.48;ReadPosRankSum=0.616;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485850    GT:AD:DP:GQ:PL    0/1:84,50:134:99:362,0,2697
10    46242094    .    A    G    249.46    QDFilter2    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.565;DP=153;Dels=0.0;FS=1.081;HRun=2;HaplotypeScore=1.9911;MQ=45.4;MQ0=14;MQRankSum=-8.337;QD=1.63;ReadPosRankSum=2.501;SNPEFF_AMINO_ACID_CHANGE=Q156R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46242048_46242095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436993    GT:AD:DP:GQ:PL    0/1:100,53:153:99:279,0,3178
10    46247151    rs117019474    C    T    168.32    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.16;MQ0=0;MQRankSum=-0.342;QD=9.35;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420848    GT:AD:DP:GQ:PL    0/1:10,8:18:99:198,0,268
10    46250545    .    A    T    77.05    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.7;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.91;MQ0=5;MQRankSum=-0.922;QD=2.85;ReadPosRankSum=-0.848;SNPEFF_AMINO_ACID_CHANGE=S380C;SNPEFF_CODON_CHANGE=Agc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46250384_46250561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436993    GT:AD:DP:GQ:PL    0/1:18,9:27:99:107,0,458
10    46252613    .    A    G    566.07    MQFilter40    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DP=136;Dels=0.0;FS=1.045;HRun=2;HaplotypeScore=4.0467;MQ=17.42;MQ0=58;MQRankSum=0.592;QD=4.16;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336378    GT:AD:DP:GQ:PL    0/1:76,60:136:99:596,0,881
10    46261414    .    A    T    143.36    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.52;MQ0=1;MQRankSum=0.868;QD=8.96;ReadPosRankSum=-0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336378    GT:AD:DP:GQ:PL    0/1:8,8:16:99:173,0,191
10    46280568    rs59591871    A    G    97.89    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.74;MQ0=0;MQRankSum=-0.72;QD=16.31;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336378    GT:AD:DP:GQ:PL    0/1:2,4:6:61.28:128,0,61
10    46280866    rs143084422    C    T    499.07    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.44;MQ0=1;MQRankSum=-0.172;QD=16.1;ReadPosRankSum=-0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336378    GT:AD:DP:GQ:PL    0/1:12,19:31:99:529,0,328
10    46281230    rs141148283    G    A    31.85    MQFilter40;QDFilter2    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.503;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.55;MQ0=3;MQRankSum=-2.973;QD=1.22;ReadPosRankSum=2.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336378    GT:AD:DP:GQ:PL    0/1:16,10:26:61.84:62,0,577
10    46282051    .    C    T    177.88    MQFilter40;QDFilter2    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.812;DP=142;Dels=0.0;FS=22.048;HRun=2;HaplotypeScore=0.9983;MQ=37.49;MQ0=4;MQRankSum=-1.89;QD=1.25;ReadPosRankSum=-1.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374359    GT:AD:DP:GQ:PL    0/1:121,21:142:99:208,0,3189
10    46282089    .    C    T    392.42    MQFilter40    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=1.206;DP=180;Dels=0.0;FS=35.684;HRun=0;HaplotypeScore=2.7799;MQ=33.18;MQ0=11;MQRankSum=-0.796;QD=2.18;ReadPosRankSum=0.272;SNPEFF_AMINO_ACID_CHANGE=T859;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46282060_46282122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436993    GT:AD:DP:GQ:PL    0/1:147,31:180:99:422,0,3425
10    46282242    rs150574436    C    T    692.94    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=0.249;DB;DP=39;Dels=0.0;FS=8.563;HRun=0;HaplotypeScore=0.0;MQ=45.88;MQ0=0;MQRankSum=-2.152;QD=17.77;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374359    GT:AD:DP:GQ:PL    0/1:14,25:39:99:723,0,410
10    46282354    rs115483900    G    A    196.92    MQFilter40    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=2.852;DB;DP=32;Dels=0.0;FS=2.386;HRun=1;HaplotypeScore=0.0;MQ=36.22;MQ0=0;MQRankSum=0.232;QD=6.15;ReadPosRankSum=-0.486;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374359    GT:AD:DP:GQ:PL    0/1:21,11:32:99:227,0,614
10    46282536    .    C    T    198.41    MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.767;DP=222;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.0;MQ=10.9;MQ0=155;MQRankSum=-0.684;QD=0.89;ReadPosRankSum=0.058;SNPEFF_AMINO_ACID_CHANGE=I880;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46282483_46282695;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537517    GT:AD:DP:GQ:PL    0/1:154,68:222:99:228,0,527
10    46321904    .    C    T    236.92    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DP=239;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=28.5268;MQ=10.2;MQ0=127;MQRankSum=4.132;QD=0.99;ReadPosRankSum=2.19;SNPEFF_AMINO_ACID_CHANGE=R260H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46321050_46322838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342551    GT:AD:DP:GQ:PL    0/1:195,44:239:99:267,0,267
10    46321905    .    G    A    230.90    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DP=244;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=29.2608;MQ=10.61;MQ0=125;MQRankSum=3.384;QD=0.95;ReadPosRankSum=2.013;SNPEFF_AMINO_ACID_CHANGE=R260C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46321050_46322838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342551    GT:AD:DP:GQ:PL    0/1:169,75:244:99:261,0,329
10    46952667    rs3120429    A    G    34.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.45;MQ0=0;MQRankSum=-0.937;QD=4.99;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374325    GT:AD:DP:GQ:PL    0/1:4,3:7:64.95:65,0,106
10    46960084    rs9422009    G    A    554.97    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=71;Dels=0.0;FS=4.319;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-1.031;QD=7.82;ReadPosRankSum=-2.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374321    GT:AD:DP:GQ:PL    0/1:48,22:71:99:585,0,1735
10    46961964    rs138447966    G    A    324.93    MQFilter40    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=55;Dels=0.0;FS=1.283;HRun=2;HaplotypeScore=0.8667;MQ=39.47;MQ0=2;MQRankSum=0.738;QD=5.91;ReadPosRankSum=0.655;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512997    GT:AD:DP:GQ:PL    0/1:39,16:55:99:355,0,855
10    46963738    rs3127783    A    G    322.07    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.83;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.32;MQ0=1;MQRankSum=-0.317;QD=11.5;ReadPosRankSum=-0.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512997    GT:AD:DP:GQ:PL    0/1:13,15:28:99:352,0,352
10    46963951    rs55945664    G    A    2036.40    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.617;DB;DP=178;Dels=0.0;FS=5.803;HRun=1;HaplotypeScore=6.384;MQ=45.23;MQ0=7;MQRankSum=1.492;QD=11.44;ReadPosRankSum=-0.327;SNPEFF_AMINO_ACID_CHANGE=L128;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46963840_46964019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374328    GT:AD:DP:GQ:PL    0/1:100,78:178:99:2066,0,2649
10    46965018    rs3127785    C    G    245    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.588;QD=13.61;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=E148D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46965002_46965122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374330    GT:AD:DP:GQ:PL    0/1:9,9:18:99:275,0,238
10    46965220    rs3127786    T    C    258.70    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.353;DB;DP=19;Dels=0.0;FS=2.199;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=13.62;ReadPosRankSum=-0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512997    GT:AD:DP:GQ:PL    0/1:8,11:19:99:289,0,268
10    46965727    rs1889849    G    A    328.83    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.151;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=8.65;ReadPosRankSum=-1.115;SNPEFF_AMINO_ACID_CHANGE=A109;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46965715_46965885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374330    GT:AD:DP:GQ:PL    0/1:26,12:38:99:359,0,756
10    46965887    rs112965082    T    TG    438.60    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.313;DB;DP=24;FS=0.0;HRun=7;HaplotypeScore=50.873;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=-0.916;QD=18.27;ReadPosRankSum=0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374321    GT:AD:DP:GQ:PL    0/1:9,15:24:99:478,0,137
10    46967672    rs2152530    C    T    1365.15    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=5.073;DB;DP=108;Dels=0.0;FS=12.933;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-0.054;QD=12.64;ReadPosRankSum=-0.794;SNPEFF_AMINO_ACID_CHANGE=P135;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46967426_46967721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374321    GT:AD:DP:GQ:PL    0/1:58,50:108:99:1395,0,1504
10    46968762    rs3127790    C    G    787.24    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=39;Dels=0.0;FS=5.221;HRun=0;HaplotypeScore=0.9469;MQ=58.81;MQ0=0;MQRankSum=-0.369;QD=20.19;ReadPosRankSum=0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374321    GT:AD:DP:GQ:PL    0/1:14,25:39:99:817,0,394
10    46969222    .    C    T    296.04    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DP=34;Dels=0.0;FS=1.763;HRun=0;HaplotypeScore=1.7219;MQ=58.63;MQ0=0;MQRankSum=-1.772;QD=8.71;ReadPosRankSum=0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374321    GT:AD:DP:GQ:PL    0/1:21,13:34:99:326,0,642
10    46969496    rs3127792    A    G    185.84    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=14.3;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374321    GT:AD:DP:GQ:PL    0/1:6,7:13:99:216,0,213
10    46970654    rs915449    C    A    40.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.4;SNPEFF_AMINO_ACID_CHANGE=T53;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46970442_46971400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374323    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:71,6,0
10    46998719    rs66608669    GTCAC    G    311.27    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=76.2202;IndelType=D;MQ=52.45;MQ0=0;MQRankSum=-0.38;QD=23.94;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374317    GT:AD:DP:GQ:PL    0/1:6,7:13:99:350,0,360
10    46998795    rs3127677    A    G    503.65    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.75;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.39;MQ0=0;MQRankSum=0.15;QD=13.99;ReadPosRankSum=0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374317    GT:AD:DP:GQ:PL    0/1:15,21:36:99:534,0,475
10    46998894    rs3127817    G    A    926.45    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.384;DB;DP=85;Dels=0.0;FS=3.442;HRun=0;HaplotypeScore=2.6711;MQ=58.89;MQ0=0;MQRankSum=-0.27;QD=10.9;ReadPosRankSum=-1.246;SNPEFF_AMINO_ACID_CHANGE=R5H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:37,44:85:99:956,0,821
10    46998995    rs4926045    C    G    789.34    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.644;DB;DP=49;Dels=0.0;FS=4.07;HRun=1;HaplotypeScore=2.7129;MQ=58.48;MQ0=0;MQRankSum=-1.247;QD=16.11;ReadPosRankSum=-0.291;SNPEFF_AMINO_ACID_CHANGE=L39V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:22,27:49:99:819,0,653
10    46998999    rs3127818    G    A    530.30    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.402;DB;DP=45;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=1.8188;MQ=58.34;MQ0=0;MQRankSum=-0.839;QD=11.78;ReadPosRankSum=1.115;SNPEFF_AMINO_ACID_CHANGE=R40H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:26,19:45:99:560,0,769
10    46999019    rs3127819    G    A    533.83    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.65;MQ0=0;MQRankSum=0.395;QD=14.05;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=V47M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:20,18:38:99:564,0,650
10    46999030    rs4925989    C    T    479.80    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.92;MQ0=0;MQRankSum=0.951;QD=13.33;ReadPosRankSum=0.887;SNPEFF_AMINO_ACID_CHANGE=A50;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:19,17:36:99:510,0,548
10    46999151    rs3127820    T    C    178.80    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=26;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=0.6651;MQ=54.24;MQ0=0;MQRankSum=-2.491;QD=6.88;ReadPosRankSum=-0.311;SNPEFF_AMINO_ACID_CHANGE=W91R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:15,11:26:99:209,0,486
10    46999178    rs7090312    A    C    351.95    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.209;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6281;MQ=53.44;MQ0=0;MQRankSum=1.919;QD=15.3;ReadPosRankSum=1.123;SNPEFF_AMINO_ACID_CHANGE=T100P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:10,13:23:99:382,0,126
10    46999189    rs3127678    C    T    40.30    SnpCluster    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=19;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=53.34;MQ0=0;MQRankSum=-1.813;QD=2.12;ReadPosRankSum=-1.133;SNPEFF_AMINO_ACID_CHANGE=G103;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:11,5:19:70.29:70,0,335
10    46999190    rs3127679    A    G    488.55    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.34;MQ0=0;QD=25.71;SNPEFF_AMINO_ACID_CHANGE=S104G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    1/1:0,19:19:45.10:522,45,0
10    46999198    rs3127680    G    T    60.64    SnpCluster    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DB;DP=19;Dels=0.0;FS=2.187;HRun=1;HaplotypeScore=0.8321;MQ=53.34;MQ0=0;MQRankSum=-1.359;QD=3.19;ReadPosRankSum=-1.02;SNPEFF_AMINO_ACID_CHANGE=L106;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:11,8:19:90.63:91,0,397
10    46999465    rs3127682    A    G    202.22    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.921;DB;DP=24;Dels=0.0;FS=1.744;HRun=1;HaplotypeScore=1.5762;MQ=55.2;MQ0=0;MQRankSum=-0.346;QD=8.43;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=S195;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:14,10:24:99:232,0,462
10    46999484    rs11204658    G    T    335.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.2;MQ0=0;MQRankSum=1.016;QD=13.98;ReadPosRankSum=1.077;SNPEFF_AMINO_ACID_CHANGE=G202W;SNPEFF_CODON_CHANGE=Ggg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:12,12:24:99:365,0,367
10    46999577    rs11204659    G    T    356.98    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=51.41;MQ0=0;MQRankSum=2.787;QD=10.5;ReadPosRankSum=2.641;SNPEFF_AMINO_ACID_CHANGE=A233S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:19,15:34:99:387,0,586
10    46999591    rs112620425    C    CATGAGGGAG    1669.94    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.743;DB;DP=35;FS=3.407;HRun=0;HaplotypeScore=442.8289;IndelType=I;MQ=48.69;MQ0=0;MQRankSum=-3.95;QD=47.71;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=-238MRE;SNPEFF_CODON_CHANGE=-/ATGAGGGAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:22,13:35:99:1709,0,1160
10    46999596    rs7895979    G    A    501.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.774;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8316;MQ=48.52;MQ0=0;MQRankSum=4.125;QD=14.76;ReadPosRankSum=1.603;SNPEFF_AMINO_ACID_CHANGE=R239K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    1/1:16,18:34:42.13:535,42,0
10    46999604    rs3127683    A    G    507.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.839;DB;DP=31;Dels=0.0;FS=4.122;HRun=3;HaplotypeScore=2.7334;MQ=47.97;MQ0=0;MQRankSum=0.056;QD=16.38;ReadPosRankSum=1.509;SNPEFF_AMINO_ACID_CHANGE=R242G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    1/1:1,30:31:42.13:541,42,0
10    46999732    rs4579877    G    A    772.04    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.004;DB;DP=48;Dels=0.0;FS=1.133;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.748;QD=16.08;ReadPosRankSum=1.624;SNPEFF_AMINO_ACID_CHANGE=G284;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:22,26:48:99:802,0,671
10    46999747    rs3127821    T    C    648.34    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.445;DB;DP=48;Dels=0.0;FS=4.196;HRun=0;HaplotypeScore=0.0;MQ=57.56;MQ0=0;MQRankSum=0.093;QD=13.51;ReadPosRankSum=-1.459;SNPEFF_AMINO_ACID_CHANGE=H289;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:26,22:48:99:678,0,867
10    46999863    rs4445576    C    G    1068.89    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=1.354;DB;DP=61;Dels=0.0;FS=2.372;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=-0.071;QD=17.52;ReadPosRankSum=1.132;SNPEFF_AMINO_ACID_CHANGE=S328C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:22,38:61:99:1099,0,611
10    47000004    rs3127822    T    C    1073.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=V375A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    1/1:0,35:35:93.24:1106,93,0
10    47000071    rs4244614    G    A    144.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DB;DP=21;Dels=0.0;FS=2.445;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.124;QD=6.89;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=A397;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:14,7:21:99:175,0,434
10    47000079    rs3127823    T    C    311.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.482;DB;DP=18;Dels=0.0;FS=6.107;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.826;QD=17.31;ReadPosRankSum=0.702;SNPEFF_AMINO_ACID_CHANGE=L400P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:6,12:18:99:342,0,193
10    47000146    rs3127684    C    T    113.30    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=12.59;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=P422;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    0/1:5,4:9:67.58:143,0,68
10    47000188    rs3127824    A    G    125.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.99;SNPEFF_AMINO_ACID_CHANGE=P436;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_46997926_47005643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374314    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:158,12,0
10    47087078    rs2229967    G    T    530.82    PASS    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=3.655;DB;DP=93;Dels=0.0;FS=5.447;HRun=0;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;MQRankSum=0.183;QD=5.71;ReadPosRankSum=0.637;SNPEFF_AMINO_ACID_CHANGE=A99S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47086725_47088320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPYR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374312    GT:AD:DP:GQ:PL    0/1:70,23:93:99:561,0,2092
10    47087371    rs1048156    G    A    298.82    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=2.222;DB;DP=59;Dels=0.0;FS=2.715;HRun=0;HaplotypeScore=0.9997;MQ=58.5;MQ0=0;MQRankSum=0.631;QD=5.06;ReadPosRankSum=1.052;SNPEFF_AMINO_ACID_CHANGE=A196;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47086725_47088320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374312    GT:AD:DP:GQ:PL    0/1:46,13:59:99:329,0,1455
10    47087474    rs1129838    C    T    1526.76    PASS    AB=0.254;AC=1;AF=0.50;AN=2;BaseQRankSum=0.562;DB;DP=71;Dels=0.0;FS=4.063;HRun=1;HaplotypeScore=2.9923;MQ=58.75;MQ0=0;MQRankSum=-0.007;QD=21.5;ReadPosRankSum=-1.073;SNPEFF_AMINO_ACID_CHANGE=L231;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47086725_47088320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374312    GT:AD:DP:GQ:PL    0/1:18,53:71:99:1557,0,401
10    47087501    rs3824733    C    T    335.26    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=1.962;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.44;MQ0=0;MQRankSum=-0.524;QD=5.88;ReadPosRankSum=0.417;SNPEFF_AMINO_ACID_CHANGE=R240C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47086725_47088320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPYR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374312    GT:AD:DP:GQ:PL    0/1:41,16:57:99:365,0,1112
10    47087608    rs1936339    T    C    1387.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_AMINO_ACID_CHANGE=A275;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47086725_47088320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374312    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1421,111,0
10    47087680    rs1048157    C    T    1155.40    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=1.078;DB;DP=46;Dels=0.0;FS=3.239;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.05;QD=25.12;ReadPosRankSum=0.294;SNPEFF_AMINO_ACID_CHANGE=H299;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47086725_47088320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374312    GT:AD:DP:GQ:PL    0/1:12,34:46:99:1185,0,213
10    47087731    rs1048158    C    T    1635.15    PASS    AB=0.299;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=1.007;QD=21.24;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=C316;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47086725_47088320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374312    GT:AD:DP:GQ:PL    0/1:23,54:77:99:1665,0,586
10    47087830    rs1129839    G    A    2282.42    PASS    AB=0.265;AC=1;AF=0.50;AN=2;BaseQRankSum=1.911;DB;DP=102;Dels=0.0;FS=4.323;HRun=0;HaplotypeScore=4.656;MQ=59.41;MQ0=0;MQRankSum=0.326;QD=22.38;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=S349;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47086725_47088320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374312    GT:AD:DP:GQ:PL    0/1:27,75:102:99:2312,0,687
10    47133793    rs28412013    G    A    959.05    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=0.582;DB;DP=223;Dels=0.0;FS=6.081;HRun=0;HaplotypeScore=2.6548;MQ=59.07;MQ0=0;MQRankSum=-0.146;QD=4.3;ReadPosRankSum=-0.438;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-314P12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421426    GT:AD:DP:GQ:PL    0/1:174,49:223:99:989,0,5613
10    47133816    rs4307655    T    A    2734.75    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.068;DB;DP=196;Dels=0.0;FS=4.407;HRun=1;HaplotypeScore=1.7884;MQ=58.72;MQ0=0;MQRankSum=0.156;QD=13.95;ReadPosRankSum=-0.338;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-314P12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421426    GT:AD:DP:GQ:PL    0/1:98,97:196:99:2765,0,2964
10    47133818    rs4979737    G    A    2880.58    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.336;DB;DP=196;Dels=0.0;FS=0.573;HRun=1;HaplotypeScore=1.7884;MQ=58.72;MQ0=0;MQRankSum=0.616;QD=14.7;ReadPosRankSum=0.161;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-314P12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421426    GT:AD:DP:GQ:PL    0/1:96,100:196:99:2911,0,2662
10    47133833    rs4568947    A    G    2388.76    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.385;DB;DP=182;Dels=0.0;FS=3.724;HRun=0;HaplotypeScore=4.0655;MQ=59.03;MQ0=0;MQRankSum=-0.416;QD=13.13;ReadPosRankSum=0.308;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-314P12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421426    GT:AD:DP:GQ:PL    0/1:95,87:182:99:2419,0,2734
10    47134007    rs9423224    A    C    175.95    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.289;QD=11.73;ReadPosRankSum=1.099;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XXyac-YR14BB7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503031    GT:AD:DP:GQ:PL    0/1:8,7:15:99:206,0,284
10    47151153    rs61841500    A    G    33.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.67;MQ0=0;QD=11.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391137.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319426    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:65,6,0
10    47151201    rs116822786    T    C    101.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.36;MQ0=0;MQRankSum=-0.336;QD=10.11;ReadPosRankSum=-1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391137.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319426    GT:AD:DP:GQ:PL    0/1:5,5:10:99:131,0,125
10    47151288    rs74132120    A    G    731.83    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.751;DB;DP=65;Dels=0.0;FS=2.354;HRun=0;HaplotypeScore=0.0;MQ=47.78;MQ0=0;MQRankSum=-2.123;QD=11.26;ReadPosRankSum=-0.845;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391137.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319426    GT:AD:DP:GQ:PL    0/1:38,27:65:99:762,0,1101
10    47151338    rs2801084    C    T    556.23    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.093;DB;DP=61;Dels=0.0;FS=1.038;HRun=0;HaplotypeScore=0.0;MQ=45.58;MQ0=0;MQRankSum=-3.224;QD=9.12;ReadPosRankSum=0.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391137.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319426    GT:AD:DP:GQ:PL    0/1:37,24:61:99:586,0,930
10    47151385    rs61841514    G    A    33.20    MQFilter40;QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=37.88;MQ0=0;MQRankSum=-2.11;QD=0.81;ReadPosRankSum=0.511;SNPEFF_AMINO_ACID_CHANGE=A155V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47151363_47151848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391137.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319426    GT:AD:DP:GQ:PL    0/1:36,5:41:63.20:63,0,798
10    47151438    rs2801083    C    G    568.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.8995;MQ=28.33;MQ0=1;QD=25.85;SNPEFF_AMINO_ACID_CHANGE=R137;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47151363_47151848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391137.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319426    GT:AD:DP:GQ:PL    1/1:0,22:22:54.15:602,54,0
10    47151642    rs140045206    C    T    152.14    MQFilter40    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=30;Dels=0.0;FS=4.593;HRun=0;HaplotypeScore=0.9159;MQ=22.42;MQ0=8;MQRankSum=-0.669;QD=5.07;ReadPosRankSum=0.739;SNPEFF_AMINO_ACID_CHANGE=S69;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47151363_47151848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391137.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319426    GT:AD:DP:GQ:PL    0/1:14,16:30:99:182,0,217
10    47158904    rs151312129    C    T    81.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.0;MQ0=1;QD=13.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358140    GT:AD:DP:GQ:PL    1/1:0,5:6:11.99:114,12,0
10    47158935    rs146402015    C    T    80.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=20.74;MQ0=1;QD=11.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358140    GT:AD:DP:GQ:PL    1/1:0,7:7:11.99:113,12,0
10    47207779    .    A    G    304.29    MQFilter40    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.162;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6809;MQ=30.33;MQ0=26;MQRankSum=-0.206;QD=2.4;ReadPosRankSum=-1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355232    GT:AD:DP:GQ:PL    0/1:104,23:127:99:334,0,2212
10    47207986    .    A    G    88.56    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5983;MQ=21.99;MQ0=7;MQRankSum=-0.421;QD=5.54;ReadPosRankSum=-1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355232    GT:AD:DP:GQ:PL    0/1:12,4:16:85.12:119,0,85
10    47381269    .    G    A    329.01    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.687;DP=89;Dels=0.0;FS=22.277;HRun=1;HaplotypeScore=0.0;MQ=29.54;MQ0=25;MQRankSum=-4.121;QD=3.7;ReadPosRankSum=-1.876;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM35B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323387    GT:AD:DP:GQ:PL    0/1:57,32:89:99:359,0,1244
10    47405767    .    T    A    821.50    MQFilter40    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.105;DP=241;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=17.13;MQ0=172;MQRankSum=-0.345;QD=3.41;ReadPosRankSum=-0.163;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM35B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323387    GT:AD:DP:GQ:PL    0/1:127,113:241:99:851,0,1135
10    47416908    rs3127728    A    G    1240.45    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.722;DB;DP=249;DS;Dels=0.0;FS=4.585;HRun=0;HaplotypeScore=5.6763;MQ=51.86;MQ0=8;MQRankSum=-8.146;QD=4.98;ReadPosRankSum=0.014;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM35B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323387    GT:AD:DP:GQ:PL    0/1:177,72:249:99:1270,0,5918
10    47663227    rs4074141    C    T    312.15    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.321;DB;DP=17;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=18.36;ReadPosRankSum=0.283;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424375    GT:AD:DP:GQ:PL    0/1:4,13:17:99:342,0,108
10    47663461    rs4074140    G    A    112.64    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=14.08;ReadPosRankSum=-0.322;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424375    GT:AD:DP:GQ:PL    0/1:3,5:8:99:143,0,100
10    47664973    rs41284475    A    G    404.48    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.606;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.134;QD=18.39;ReadPosRankSum=-0.601;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424375    GT:AD:DP:GQ:PL    0/1:9,13:22:99:434,0,316
10    47667508    rs34058224    C    A    823.38    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.407;DB;DP=52;Dels=0.0;FS=1.255;HRun=0;HaplotypeScore=0.9665;MQ=56.11;MQ0=0;MQRankSum=-1.107;QD=15.83;ReadPosRankSum=1.486;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441923    GT:AD:DP:GQ:PL    0/1:23,29:52:99:853,0,663
10    47667568    rs112679328    A    C    506.81    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.806;DB;DP=26;Dels=0.0;FS=2.764;HRun=0;HaplotypeScore=0.0;MQ=48.25;MQ0=0;MQRankSum=-2.472;QD=19.49;ReadPosRankSum=-1.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441923    GT:AD:DP:GQ:PL    0/1:8,18:26:99:537,0,237
10    47668720    rs72790466    A    G    654.52    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.015;DB;DP=62;Dels=0.0;FS=1.053;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.75;QD=10.56;ReadPosRankSum=0.765;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441923    GT:AD:DP:GQ:PL    0/1:37,25:62:99:685,0,1131
10    47668787    rs3013800    A    G    346.77    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.073;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-1.496;QD=13.87;ReadPosRankSum=-1.006;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441923    GT:AD:DP:GQ:PL    0/1:12,13:25:99:377,0,413
10    47673858    rs7092598    T    C    180.17    SnpCluster    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.42;MQ0=0;MQRankSum=-1.077;QD=7.83;ReadPosRankSum=0.523;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424375    GT:AD:DP:GQ:PL    0/1:11,12:23:99:210,0,371
10    47673859    rs80125298    G    A    160.49    SnpCluster    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.71;MQ0=0;MQRankSum=-0.521;QD=6.69;ReadPosRankSum=0.232;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424375    GT:AD:DP:GQ:PL    0/1:11,13:24:99:190,0,364
10    47673864    rs57149643    C    A    348.98    SnpCluster    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.505;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.45;MQ0=0;MQRankSum=-1.973;QD=12.46;ReadPosRankSum=0.395;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424375    GT:AD:DP:GQ:PL    0/1:12,16:28:99:379,0,433
10    47701275    rs10906952    G    A    906.81    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=3.939;DB;DP=65;Dels=0.0;FS=4.913;HRun=0;HaplotypeScore=0.7887;MQ=55.97;MQ0=0;MQRankSum=0.969;QD=13.95;ReadPosRankSum=0.846;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424375    GT:AD:DP:GQ:PL    0/1:32,33:65:99:937,0,877
10    47701302    rs7091749    G    C    2752.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=1.7608;MQ=56.8;MQ0=0;QD=28.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ANTXRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424375    GT:AD:DP:GQ:PL    1/1:0,96:96:99:2786,226,0
10    47728608    rs145557951    T    C    150.22    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.66;MQ0=49;QD=1.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280961    GT:AD:DP:GQ:PL    1/1:0,86:86:18.02:183,18,0
10    47729164    rs143274153    G    A    1267.86    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.664;DB;DP=195;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=3.8383;MQ=30.04;MQ0=12;MQRankSum=0.213;QD=6.5;ReadPosRankSum=0.712;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280961    GT:AD:DP:GQ:PL    0/1:117,78:195:99:1298,0,2330
10    47729258    .    C    T    1030.35    MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.752;DP=226;DS;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=1.7621;MQ=22.17;MQ0=42;MQRankSum=-0.901;QD=4.56;ReadPosRankSum=1.158;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280961    GT:AD:DP:GQ:PL    0/1:123,103:226:99:1060,0,1837
10    47729407    rs61842889    G    A    1593.32    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.155;DB;DP=223;DS;Dels=0.0;FS=1.958;HRun=0;HaplotypeScore=3.8638;MQ=26.47;MQ0=21;MQRankSum=1.078;QD=7.14;ReadPosRankSum=1.773;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280961    GT:AD:DP:GQ:PL    0/1:129,93:223:99:1623,0,2092
10    47746978    rs138970875    C    A    76.07    MQFilter40    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=16.92;MQ0=10;MQRankSum=1.256;QD=3.31;ReadPosRankSum=1.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374277    GT:AD:DP:GQ:PL    0/1:14,9:23:99:106,0,112
10    47747159    .    G    C    50.72    MQFilter40;QDFilter2    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.46;MQ0=54;MQRankSum=1.406;QD=0.75;ReadPosRankSum=-1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL603965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335083    GT:AD:DP:GQ:PL    0/1:50,18:68:55.05:81,0,55
10    47750968    rs75799293    C    T    67.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.34;MQ0=0;QD=22.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL603965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335083    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:99,9,0
10    47756004    rs3013885    T    C    1399.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.93;MQ0=2;QD=25.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL603965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335083    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1432,126,0
10    47756145    .    T    C    887.56    MQFilter40    AC=2;AF=1.00;AN=2;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.19;MQ0=5;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL603965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335083    GT:AD:DP:GQ:PL    1/1:0,39:39:90.11:921,90,0
10    47756662    .    T    G    297.53    MQFilter40    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=29.75;SNPEFF_AMINO_ACID_CHANGE=N130K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47756639_47756732;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA8L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538825    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:331,30,0
10    47910917    .    A    G    31    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=18.73;MQ0=2;MQRankSum=-0.937;QD=3.44;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355876    GT:AD:DP:GQ:PL    0/1:3,6:9:60.99:61,0,65
10    47911549    .    A    G    539.58    MQFilter40    AC=2;AF=1.00;AN=2;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.9;MQ0=14;QD=11.73;SNPEFF_AMINO_ACID_CHANGE=P179;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47911500_47911679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535219    GT:AD:DP:GQ:PL    1/1:7,39:46:54.09:573,54,0
10    47915891    rs192916706    C    A    505.50    MQFilter40    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.21;DB;DP=52;Dels=0.0;FS=4.483;HRun=0;HaplotypeScore=2.4029;MQ=24.69;MQ0=16;MQRankSum=-0.397;QD=9.72;ReadPosRankSum=0.817;SNPEFF_AMINO_ACID_CHANGE=S270Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_47915878_47915964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535219    GT:AD:DP:GQ:PL    0/1:23,29:52:81.29:535,0,81
10    48003992    rs142685947    C    T    2135.11    MQFilter40    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.366;DB;DP=214;Dels=0.0;FS=2.789;HRun=0;HaplotypeScore=1.6553;MQ=32.48;MQ0=11;MQRankSum=1.889;QD=9.98;ReadPosRankSum=-0.183;SNPEFF_AMINO_ACID_CHANGE=C540Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_48003968_48004056;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420079    GT:AD:DP:GQ:PL    0/1:109,105:214:99:2165,0,2297
10    48370595    rs11204210    G    A    851.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=71;Dels=0.0;FS=0.93;HRun=2;HaplotypeScore=4.3801;MQ=60.0;MQ0=0;MQRankSum=-1.325;QD=12.0;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=G21;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_48370425_48373866;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF488;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395702    GT:AD:DP:GQ:PL    0/1:35,35:71:99:882,0,1050
10    48370747    rs35618062    C    T    187.97    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=18;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.8941;MQ=58.71;MQ0=0;MQRankSum=0.174;QD=10.44;ReadPosRankSum=2.372;SNPEFF_AMINO_ACID_CHANGE=A72V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_48370425_48373866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF488;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395702    GT:AD:DP:GQ:PL    0/1:9,8:18:99:218,0,205
10    48371277    rs3814160    C    T    243.38    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.608;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.407;QD=6.95;ReadPosRankSum=-0.434;SNPEFF_AMINO_ACID_CHANGE=P249S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_48370425_48373866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF488;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395702    GT:AD:DP:GQ:PL    0/1:23,12:35:99:273,0,711
10    48385682    rs2234691    T    C    156.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224600    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
10    48386110    rs2070706    T    C    288.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.163;QD=18.04;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224600    GT:AD:DP:GQ:PL    0/1:6,10:16:99:319,0,203
10    48390041    rs2376635    C    T    381.52    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=18.17;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=T279;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_48387824_48390991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000224600    GT:AD:DP:GQ:PL    0/1:7,13:21:99:412,0,188
10    48414570    rs7923671    A    G    123.56    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.202;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.936;QD=8.24;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249598    GT:AD:DP:GQ:PL    0/1:7,8:15:99:154,0,221
10    48416274    rs12252199    C    T    36.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.28;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249598    GT:AD:DP:GQ:PL    0/1:3,2:5:66.40:66,0,67
10    48426798    rs743509    C    T    617.64    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.873;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.483;QD=22.06;ReadPosRankSum=-0.737;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224605    GT:AD:DP:GQ:PL    0/1:8,20:28:99:648,0,186
10    48429650    rs2236723    G    A    353.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224605    GT:AD:DP:GQ:PL    1/1:0,15:15:36.07:387,36,0
10    49199763    .    T    C    50.25    MQFilter40;QDFilter2    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DP=53;Dels=0.0;FS=12.43;HRun=1;HaplotypeScore=0.0;MQ=15.27;MQ0=27;MQRankSum=-2.425;QD=0.95;ReadPosRankSum=1.994;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM25C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445114    GT:AD:DP:GQ:PL    0/1:30,23:53:80.24:80,0,306
10    49199766    .    C    G    47.80    MQFilter40;QDFilter2    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.97;DP=48;Dels=0.0;FS=12.43;HRun=2;HaplotypeScore=0.0;MQ=15.83;MQ0=24;MQRankSum=-2.296;QD=1.0;ReadPosRankSum=1.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM25C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445114    GT:AD:DP:GQ:PL    0/1:26,22:48:77.80:78,0,306
10    49218378    rs61837957    C    T    1195.72    MQFilter40    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=6.126;DB;DP=183;Dels=0.0;FS=13.284;HRun=0;HaplotypeScore=4.3117;MQ=34.33;MQ0=15;MQRankSum=1.318;QD=6.53;ReadPosRankSum=0.773;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339771    GT:AD:DP:GQ:PL    0/1:126,57:183:99:1226,0,2559
10    49218407    .    CG    C    955.74    PASS    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=8.023;DP=109;FS=1.783;HRun=1;HaplotypeScore=501.9404;IndelType=D;MQ=29.46;MQ0=28;MQRankSum=1.089;QD=5.9;ReadPosRankSum=-0.254;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339771    GT:AD:DP:GQ:PL    0/1:121,41:109:99:995,0,3071
10    49218414    rs181748074    C    A    585.61    HaplotypeScoreFilter13;MQFilter40    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=155;Dels=0.0;FS=7.34;HRun=0;HaplotypeScore=31.8688;MQ=27.79;MQ0=29;MQRankSum=2.508;QD=3.78;ReadPosRankSum=-1.535;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339771    GT:AD:DP:GQ:PL    0/1:114,41:155:99:616,0,1815
10    49218498    .    A    G    416.73    MQFilter40    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DP=103;Dels=0.0;FS=49.647;HRun=1;HaplotypeScore=1.8305;MQ=37.67;MQ0=8;MQRankSum=-4.192;QD=4.05;ReadPosRankSum=-1.169;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339771    GT:AD:DP:GQ:PL    0/1:70,33:103:99:447,0,2036
10    49218553    rs77581903    T    C    149.12    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.801;DB;DP=103;Dels=0.0;FS=42.147;HRun=0;HaplotypeScore=3.9933;MQ=42.34;MQ0=6;MQRankSum=-5.964;QD=1.45;ReadPosRankSum=1.542;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339771    GT:AD:DP:GQ:PL    0/1:83,20:103:99:179,0,2720
10    49218561    rs77177732    G    C    108.46    QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.526;DB;DP=105;Dels=0.0;FS=33.874;HRun=1;HaplotypeScore=3.9933;MQ=41.29;MQ0=10;MQRankSum=-5.772;QD=1.03;ReadPosRankSum=0.186;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339771    GT:AD:DP:GQ:PL    0/1:82,23:105:99:138,0,2744
10    49226116    .    C    A    120.22    MQFilter40    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.54;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.03;MQ0=22;MQRankSum=1.588;QD=3.16;ReadPosRankSum=0.635;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTGLF12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339771    GT:AD:DP:GQ:PL    0/1:16,22:38:99:150,0,105
10    49275576    .    T    C    888.95    MQFilter40    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.04;DP=177;DS;Dels=0.0;FS=6.125;HRun=0;HaplotypeScore=1.6553;MQ=18.18;MQ0=47;MQRankSum=-0.327;QD=5.02;ReadPosRankSum=0.8;SNPEFF_AMINO_ACID_CHANGE=I223V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_49275334_49275668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN20C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316733    GT:AD:DP:GQ:PL    0/1:95,82:177:99:919,0,1007
10    49380938    rs150951140    G    A    236.48    MQFilter40    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.987;DB;DP=79;Dels=0.0;FS=7.393;HRun=4;HaplotypeScore=1.5317;MQ=30.68;MQ0=9;MQRankSum=-0.739;QD=2.99;ReadPosRankSum=-1.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477710    GT:AD:DP:GQ:PL    0/1:58,20:79:99:266,0,1186
10    49380999    .    T    C    132.71    MQFilter40;QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.971;DP=139;Dels=0.0;FS=56.05;HRun=1;HaplotypeScore=0.0;MQ=33.65;MQ0=6;MQRankSum=0.223;QD=0.95;ReadPosRankSum=0.174;SNPEFF_AMINO_ACID_CHANGE=S1039;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_49380989_49381136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407470    GT:AD:DP:GQ:PL    0/1:117,22:139:99:163,0,2697
10    49388901    .    C    T    46.79    MQFilter40;QDFilter2    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=7.55;MQ0=61;MQRankSum=0.245;QD=0.54;ReadPosRankSum=1.115;SNPEFF_AMINO_ACID_CHANGE=G880E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_49388846_49389051;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407470    GT:AD:DP:GQ:PL    0/1:58,28:86:29.41:77,0,29
10    49389016    .    T    C    112.36    MQFilter40;QDFilter2    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.12;MQ0=34;MQRankSum=-0.124;QD=1.65;ReadPosRankSum=1.161;SNPEFF_AMINO_ACID_CHANGE=S842G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_49388846_49389051;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407470    GT:AD:DP:GQ:PL    0/1:42,24:68:99:142,0,224
10    49392575    rs931743    C    G    380.82    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.287;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.284;QD=13.13;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494505    GT:AD:DP:GQ:PL    0/1:15,14:29:99:411,0,507
10    49420008    rs1864345    T    C    186.35    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=18;Dels=0.0;FS=1.958;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.721;QD=10.35;ReadPosRankSum=-1.54;SNPEFF_AMINO_ACID_CHANGE=K502E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_49419997_49420149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407470    GT:AD:DP:GQ:PL    0/1:11,7:18:99:216,0,291
10    49420205    rs72792229    C    T    111.33    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.461;QD=9.28;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305531    GT:AD:DP:GQ:PL    0/1:7,5:12:99:141,0,251
10    49430169    rs148237970    GTGGA    G    322.03    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=121.4026;IndelType=D;MQ=58.86;MQ0=0;MQRankSum=-1.755;QD=12.39;ReadPosRankSum=-1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305531    GT:AD:DP:GQ:PL    0/1:15,11:26:99:361,0,576
10    49440346    rs6537556    C    T    210.08    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.329;QD=13.13;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305531    GT:AD:DP:GQ:PL    0/1:9,7:16:99:240,0,306
10    49445800    rs733955    T    C    30.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.32;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468556    GT:AD:DP:GQ:PL    0/1:5,2:7:60.22:60,0,177
10    49445850    rs68069145    T    C    198.52    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=11.68;ReadPosRankSum=1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468556    GT:AD:DP:GQ:PL    0/1:10,7:17:99:229,0,325
10    49446204    rs905184    T    C    440.08    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.792;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=16.93;ReadPosRankSum=0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468556    GT:AD:DP:GQ:PL    0/1:7,19:26:99:470,0,152
10    49450443    rs280612    A    G    573.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305531    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:606,48,0
10    49609578    rs3730154    C    A    321.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374189    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:354,27,0
10    49613164    rs67126940    A    ATG    323.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=19.1218;IndelType=I;MQ=63.02;MQ0=0;QD=46.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360332    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:366,21,0
10    49618352    rs56361423    T    G    136.43    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=12.4;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426557    GT:AD:DP:GQ:PL    0/1:5,6:11:99:166,0,180
10    49643226    rs1062225    A    G    75.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360332    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:106,0,31
10    49654342    rs1051508    C    T    69.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.85;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417912    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:99,0,67
10    49654403    rs1051507    C    T    440.12    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=59.14;MQ0=0;MQRankSum=1.672;QD=16.3;ReadPosRankSum=0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460425    GT:AD:DP:GQ:PL    0/1:12,15:27:99:470,0,371
10    49658248    rs1867585    G    A    169.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471013    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
10    49661341    rs7092959    A    G    1047.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7313;MQ=58.71;MQ0=0;QD=29.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471013    GT:AD:DP:GQ:PL    1/1:0,36:36:90.25:1080,90,0
10    49661665    rs4838592    A    G    78.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489984    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
10    49661970    rs4838593    T    C    34.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.59;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489984    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:64,0,71
10    49661984    rs41306926    C    G    73.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.74;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489984    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:104,0,69
10    49667713    rs1867575    G    A    5656.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=59.72;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249601    GT:AD:DP:GQ:PL    1/1:0,161:162:99:5657,415,0
10    49667795    rs3853761    T    C    4386.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.0898;MQ=59.69;MQ0=0;QD=29.64;SNPEFF_AMINO_ACID_CHANGE=P107;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_49667727_49667934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374170    GT:AD:DP:GQ:PL    1/1:0,148:148:99:4386,361,0
10    49687556    rs4240511    A    C    42.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249601    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
10    49687594    rs4838601    G    A    206.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249601    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
10    49687800    rs4080665    G    A    109.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=56.43;MQ0=0;MQRankSum=-0.676;QD=9.11;ReadPosRankSum=-1.268;SNPEFF_AMINO_ACID_CHANGE=A110;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_49687679_49687807;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249601    GT:AD:DP:GQ:PL    0/1:5,6:12:99:139,0,180
10    49804554    rs10776627    A    G    435.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249601    GT:AD:DP:GQ:PL    1/1:1,13:14:36.12:468,36,0
10    49804785    rs10745280    T    G    862.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249601    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:895,69,0
10    49812917    rs17010948    T    C    250.32    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.192;QD=17.88;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435790    GT:AD:DP:GQ:PL    0/1:4,10:14:86.86:280,0,87
10    49931845    rs7920007    T    C    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    49939077    rs2377628    T    A    783.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=37.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,21:21:63.17:817,63,0
10    49939139    rs1993986    T    A    1568.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=59.52;MQ0=0;MQRankSum=1.659;QD=32.69;ReadPosRankSum=1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1602,120,0
10    49944249    rs4838645    C    T    960.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:994,72,0
10    49944268    rs41282001    T    G    411.42    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=20.57;ReadPosRankSum=-0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:6,13:20:99:441,0,181
10    49982325    rs2663063    G    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    49983890    rs1871604    G    T    2208.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=59.55;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2242,166,0
10    49984690    rs2947344    G    A    368.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.36;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:401,33,0
10    49987020    rs2683612    T    C    106.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=21.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:139,12,0
10    50014273    rs1871611    C    A    83.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.537;QD=13.87;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:3,3:6:24.09:113,0,24
10    50014328    rs1871612    A    G    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    50019435    rs10745283    T    C    268.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454161    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:301,24,0
10    50025396    rs7097397    G    A    187.21    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=17.02;ReadPosRankSum=0.896;SNPEFF_AMINO_ACID_CHANGE=R1816Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50025290_50025454;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:4,7:11:99:217,0,121
10    50030242    rs3747878    G    C    117.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.67;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:4,4:8:99:147,0,100
10    50038720    rs3747875    G    T    131.35    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=11.94;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:6,5:11:99:161,0,173
10    50038800    rs3747874    A    G    211.61    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=17;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=12.45;ReadPosRankSum=-0.818;SNPEFF_AMINO_ACID_CHANGE=Q2132;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50038745_50038930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:9,8:17:99:242,0,330
10    50040562    rs3747873    A    G    912.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.242;DB;DP=66;Dels=0.0;FS=7.36;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=13.83;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:33,33:66:99:943,0,945
10    50040610    rs3747872    T    G    1572.22    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=2.685;DB;DP=105;Dels=0.0;FS=0.747;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=14.83;ReadPosRankSum=-0.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:52,53:105:99:1602,0,1581
10    50075461    rs2663019    G    A    68.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=7.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:5,4:9:98.39:98,0,185
10    50083111    rs2620881    T    C    220.62    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=23;Dels=0.0;FS=1.744;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=9.59;ReadPosRankSum=0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:13,10:23:99:251,0,392
10    50085267    rs1904595    C    G    618.65    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=46;Dels=0.0;FS=1.4;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.191;QD=13.45;ReadPosRankSum=-2.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:20,26:46:99:649,0,575
10    50085428    rs2620880    A    G    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
10    50109902    rs2663046    G    A    985.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.74;MQ0=0;QD=35.19;SNPEFF_AMINO_ACID_CHANGE=S2527N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50109846_50109908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1018,78,0
10    50110015    rs7068839    A    T    30.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=6.03;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:3,2:5:60.15:60,0,111
10    50121322    rs2663055    G    A    583.37    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.97;DB;DP=42;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=1.8773;MQ=59.45;MQ0=0;MQRankSum=0.29;QD=13.89;ReadPosRankSum=-2.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374160    GT:AD:DP:GQ:PL    0/1:22,20:42:99:613,0,769
10    50121784    rs10776653    T    C    215.88    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.336;DB;DP=22;Dels=0.0;FS=1.885;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.668;QD=9.81;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=T139;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50121294_50122280;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298124    GT:AD:DP:GQ:PL    0/1:13,9:22:99:246,0,416
10    50122181    rs7094610    C    A    692.20    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.315;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.69;QD=17.75;ReadPosRankSum=0.843;SNPEFF_AMINO_ACID_CHANGE=G7V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50121294_50122280;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298124    GT:AD:DP:GQ:PL    0/1:17,22:39:99:722,0,481
10    50149674    rs2671717    A    G    273.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=27.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:307,24,0
10    50151616    rs2943250    G    A    596.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,17:18:51.14:630,51,0
10    50154768    rs2663066    A    T    718.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:752,57,0
10    50155130    rs2663067    C    T    164.65    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=56.71;MQ0=0;MQRankSum=0.101;QD=12.67;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:7,6:13:99:195,0,233
10    50165128    rs3829206    G    A    408.03    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=33;Dels=0.0;FS=1.352;HRun=1;HaplotypeScore=1.4538;MQ=58.73;MQ0=0;MQRankSum=0.38;QD=12.36;ReadPosRankSum=-0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:15,18:33:99:438,0,429
10    50184949    rs2271565    C    T    84.20    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=4.95;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=C3072;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50184842_50185024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    0/1:12,5:17:99:114,0,372
10    50186415    rs2292584    C    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_AMINO_ACID_CHANGE=P3118L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50186354_50186438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325239    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
10    50227515    rs2244575    C    T    255.66    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=23.24;ReadPosRankSum=-0.118;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332853    GT:AD:DP:GQ:PL    0/1:2,9:11:53.78:286,0,54
10    50227785    rs1913525    T    C    947.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=E291;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50226490_50227820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332853    GT:AD:DP:GQ:PL    1/1:0,31:31:75.23:981,75,0
10    50227870    rs1913524    C    T    302.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=25.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332853    GT:AD:DP:GQ:PL    1/1:0,12:12:27.05:336,27,0
10    50227927    rs1913523    C    A    216.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332853    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
10    50315893    rs13088    A    G    396.73    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=18.03;ReadPosRankSum=-0.853;SNPEFF_AMINO_ACID_CHANGE=F68S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50315639_50316040;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298454    GT:AD:DP:GQ:PL    0/1:8,14:22:99:427,0,202
10    50339925    rs12765281    G    A    103.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=7.41;ReadPosRankSum=-0.533;SNPEFF_AMINO_ACID_CHANGE=D195;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50339199_50340397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM170B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311787    GT:AD:DP:GQ:PL    0/1:8,6:14:99:134,0,244
10    50340304    rs17773851    C    A    172.53    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=11;Dels=0.0;FS=3.233;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=2.52;QD=15.68;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=R69L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50339199_50340397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM170B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311787    GT:AD:DP:GQ:PL    0/1:4,7:11:90.88:203,0,91
10    50341954    rs34110351    A    G    94.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=7.89;ReadPosRankSum=-1.835;SNPEFF_AMINO_ACID_CHANGE=Y4H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50341852_50342053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM170B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311787    GT:AD:DP:GQ:PL    0/1:8,4:12:99:125,0,248
10    50373738    rs77059741    G    T    270.03    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=17;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.025;QD=15.88;ReadPosRankSum=-0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470884    GT:AD:DP:GQ:PL    0/1:7,10:17:99:300,0,239
10    50374930    rs45563932    C    T    1089.81    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.477;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.69;MQ0=0;MQRankSum=0.789;QD=14.53;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=T66;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50374914_50375054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf128;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453436    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1120,0,1050
10    50376394    rs72786903    C    T    108.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.45;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374148    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,106
10    50531604    rs7093235    T    C    2796.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.891;MQ=59.49;MQ0=0;QD=34.11;SNPEFF_AMINO_ACID_CHANGE=L338;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50530447_50532664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf71;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323868    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2830,226,0
10    50532588    rs10857469    C    G    1913.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.61;MQ0=0;QD=32.44;SNPEFF_AMINO_ACID_CHANGE=H666Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50530447_50532664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323868    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1947,144,0
10    50532683    rs7921186    T    C    2208.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_AMINO_ACID_CHANGE=F698S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50530447_50535532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374144    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2241,178,0
10    50532812    rs11101093    A    G    2828.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=D741G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50530447_50535532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374144    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2861,214,0
10    50533463    rs10857470    T    A    599.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=F958Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50530447_50535532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374144    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:632,51,0
10    50533617    rs2377940    T    C    1282.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=G1009;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50530447_50535532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf71;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374144    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1315,102,0
10    50533841    rs11101094    G    C    436.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=G1084A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50530447_50535532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374144    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:469,36,0
10    50594509    rs12261515    C    A    469.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9399;MQ=58.45;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRGX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374139    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:502,36,0
10    50678066    rs4240505    G    A    278.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355832    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:311,24,0
10    50680685    rs10437449    A    C    244.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355832    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
10    50681033    rs2229760    G    A    1708.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=29.45;SNPEFF_AMINO_ACID_CHANGE=G287;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50680955_50681074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542458    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1741,132,0
10    50691009    rs4240506    C    T    495.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475116    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:528,39,0
10    50691360    rs4253162    T    C    1297.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.41;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475116    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1330,102,0
10    50701156    rs4253132    G    A    889.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355832    GT:AD:DP:GQ:PL    1/1:0,26:26:69.20:923,69,0
10    50723684    rs4253073    G    A    2761.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8067;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=L493;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50723151_50725167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374127    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2794,205,0
10    50724016    rs4253072    C    T    1846.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_AMINO_ACID_CHANGE=R382K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50723151_50725167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGBD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374127    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1880,141,0
10    50725342    rs11101144    A    T    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355832    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
10    50740876    rs2228524    G    C    1703.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=L45;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50740589_50741024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355832    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1737,129,0
10    50818762    rs1880675    C    T    121.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339797    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
10    50820345    rs8187730    C    A    2653.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.42;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=A520E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50818347_50820765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374115    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2686,202,0
10    50820424    rs2269338    G    T    850.86    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=3.262;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9312;MQ=59.56;MQ0=0;MQRankSum=0.618;QD=16.36;ReadPosRankSum=0.846;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339797    GT:AD:DP:GQ:PL    0/1:22,30:52:99:881,0,619
10    50823981    rs8178987    C    T    476.69    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.676;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=58.27;MQ0=0;MQRankSum=0.222;QD=17.66;ReadPosRankSum=-0.173;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374115    GT:AD:DP:GQ:PL    0/1:11,16:27:99:507,0,382
10    50824038    rs8178988    C    T    612.05    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.785;DB;DP=43;Dels=0.0;FS=4.304;HRun=0;HaplotypeScore=0.9734;MQ=58.92;MQ0=0;MQRankSum=1.268;QD=14.23;ReadPosRankSum=-0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374115    GT:AD:DP:GQ:PL    0/1:18,25:43:99:642,0,584
10    50824117    rs1880676    G    A    1309.96    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=3.061;DB;DP=86;Dels=0.0;FS=4.237;HRun=1;HaplotypeScore=0.9993;MQ=59.47;MQ0=0;MQRankSum=0.519;QD=15.06;ReadPosRankSum=1.089;SNPEFF_AMINO_ACID_CHANGE=D7N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50824069_50824138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395562    GT:AD:DP:GQ:PL    0/1:41,45:86:99:1340,0,1318
10    50824244    rs11101182    C    A    522.79    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.9;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7719;MQ=59.42;MQ0=0;MQRankSum=0.46;QD=13.07;ReadPosRankSum=2.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374115    GT:AD:DP:GQ:PL    0/1:21,19:40:99:553,0,677
10    50824619    rs3810950    G    A    126.08    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.482;QD=6.64;ReadPosRankSum=0.833;SNPEFF_AMINO_ACID_CHANGE=A120T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50824548_50824648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337653    GT:AD:DP:GQ:PL    0/1:13,6:19:99:156,0,440
10    50828506    rs1880677    G    A    2335.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481336    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2369,181,0
10    50835967    rs3810951    C    A    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460699    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    50854637    rs8178991    G    A    421.56    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=45;Dels=0.0;FS=2.982;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.011;QD=9.37;ReadPosRankSum=0.381;SNPEFF_AMINO_ACID_CHANGE=D282N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50854551_50854720;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339797    GT:AD:DP:GQ:PL    0/1:26,19:45:99:452,0,754
10    50856652    rs4838544    G    A    184.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_AMINO_ACID_CHANGE=V343M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50856553_50856653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339797    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:218,18,0
10    50857835    rs1917813    T    C    136.58    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.588;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.378;QD=10.51;ReadPosRankSum=-1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337653    GT:AD:DP:GQ:PL    0/1:6,7:13:99:167,0,221
10    50857849    rs3793797    C    T    282.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337653    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
10    50857890    rs1917812    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337653    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    50863083    rs12264845    A    C    867.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337653    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:901,69,0
10    50863147    rs8178992    T    C    1486.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=H429;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50863141_50863282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339797    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1519,114,0
10    50863565    rs7076926    C    T    1329.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=39.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337653    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1362,102,0
10    50870519    rs10857527    T    C    239.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337653    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:272,21,0
10    50901671    rs1153796    A    G    624.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374111    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:658,51,0
10    50901809    rs1153797    T    G    1759.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374111    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1792,135,0
10    50916484    rs1258236    A    G    3186.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=59.77;MQ0=0;QD=32.19;SNPEFF_AMINO_ACID_CHANGE=R99G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50916407_50918307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374112    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3219,250,0
10    50916542    rs4838554    C    T    1114.02    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=99;Dels=0.0;FS=10.049;HRun=1;HaplotypeScore=2.7782;MQ=59.81;MQ0=0;MQRankSum=-1.149;QD=11.25;ReadPosRankSum=-0.276;SNPEFF_AMINO_ACID_CHANGE=T118I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50916407_50918307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374112    GT:AD:DP:GQ:PL    0/1:60,39:99:99:1144,0,1853
10    50916834    rs6537550    G    A    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374112    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
10    50943186    rs1258256    C    T    618.13    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=3.146;DB;DP=41;Dels=0.0;FS=1.711;HRun=1;HaplotypeScore=0.7887;MQ=58.87;MQ0=0;MQRankSum=-1.204;QD=15.08;ReadPosRankSum=0.301;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490844    GT:AD:DP:GQ:PL    0/1:18,23:41:99:648,0,500
10    50944009    rs1258257    T    C    211.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374103    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
10    50944613    rs1258258    C    T    485.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=21;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.679;QD=23.14;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374103    GT:AD:DP:GQ:PL    0/1:7,14:21:99:516,0,183
10    50947507    rs17775990    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496884    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:72,0,29
10    50947918    rs1258259    A    G    219.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496884    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:252,18,0
10    50950976    rs11101224    G    A    353.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.26;QD=14.74;ReadPosRankSum=1.068;SNPEFF_AMINO_ACID_CHANGE=T428M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50950874_50951024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432695    GT:AD:DP:GQ:PL    0/1:12,12:24:99:384,0,343
10    50951210    rs1268722    G    A    43.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496884    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:73,0,36
10    50952851    rs1268723    C    T    335.62    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=23;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.6651;MQ=58.99;MQ0=0;MQRankSum=1.262;QD=14.59;ReadPosRankSum=0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374103    GT:AD:DP:GQ:PL    0/1:11,12:23:99:366,0,317
10    50953830    rs7910114    G    A    208.75    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DB;DP=23;Dels=0.0;FS=2.086;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.326;QD=9.08;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374103    GT:AD:DP:GQ:PL    0/1:14,9:23:99:239,0,343
10    50957983    rs1258180    G    A    75.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374103    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
10    50959682    rs1258182    C    G    81.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.21;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471460    GT:AD:DP:GQ:PL    0/1:2,3:5:64.98:111,0,65
10    50959782    rs1258183    T    C    715.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471460    GT:AD:DP:GQ:PL    1/1:0,19:20:57.17:748,57,0
10    50960166    rs2304635    C    T    915.30    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.689;DB;DP=59;Dels=0.0;FS=3.671;HRun=0;HaplotypeScore=2.6548;MQ=58.82;MQ0=0;MQRankSum=1.139;QD=15.51;ReadPosRankSum=-1.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471460    GT:AD:DP:GQ:PL    0/1:25,34:59:99:945,0,676
10    50960209    rs1258184    G    A    756.11    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=54;Dels=0.0;FS=1.052;HRun=1;HaplotypeScore=0.734;MQ=59.14;MQ0=0;MQRankSum=-0.224;QD=14.0;ReadPosRankSum=0.422;SNPEFF_AMINO_ACID_CHANGE=L131;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_50960179_50960294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419399    GT:AD:DP:GQ:PL    0/1:24,30:54:99:786,0,747
10    50960354    rs2304636    C    T    320.48    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.632;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.326;QD=21.37;ReadPosRankSum=0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471460    GT:AD:DP:GQ:PL    0/1:4,11:15:99:350,0,100
10    50960581    rs2304637    A    G    162.15    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=20.27;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471460    GT:AD:DP:GQ:PL    0/1:2,6:8:58.34:192,0,58
10    50964656    rs751595    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374103    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    50964761    rs2889728    T    C    96.76    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=10.75;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374103    GT:AD:DP:GQ:PL    0/1:4,5:9:99:127,0,134
10    51124153    rs2664655    T    G    144.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=37.43;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402038    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:177,15,0
10    51130801    rs140815608    C    CTA    480.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=23.8588;IndelType=I;MQ=14.78;MQ0=27;QD=9.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402038    GT:AD:DP:GQ:PL    1/1:23,26:11:30.10:523,30,0
10    51361850    .    C    T    34.75    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=3.95;MQ0=112;QD=0.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-592B15.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399369    GT:AD:DP:GQ:PL    1/1:67,47:114:6.01:66,6,0
10    51374253    rs78115295    C    T    243.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.0;MQ0=2;QD=20.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374097    GT:AD:DP:GQ:PL    1/1:0,12:12:30.03:277,30,0
10    51464656    .    G    C    182.57    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=153;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=6.58;MQ0=140;QD=1.19;SNPEFF_AMINO_ACID_CHANGE=D600E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51464162_51465939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    1/1:79,56:153:21.02:216,21,0
10    51465552    rs76363375    A    T    2231.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7468;MQ=20.36;MQ0=40;QD=13.86;SNPEFF_AMINO_ACID_CHANGE=Y302N;SNPEFF_CODON_CHANGE=Tat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51464162_51465939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    1/1:0,161:161:99:2264,201,0
10    51465650    .    C    T    1045.42    MQFilter40    AC=2;AF=1.00;AN=2;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6828;MQ=16.2;MQ0=100;QD=4.18;SNPEFF_AMINO_ACID_CHANGE=R269Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51464162_51465939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    1/1:69,181:250:87.24:1078,87,0
10    51465920    rs4043622    G    A    119.19    MQFilter40;QDFilter2    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=247;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=4.87;MQ0=238;MQRankSum=-0.751;QD=0.48;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=T179M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51464162_51465939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    0/1:196,51:247:15.38:149,0,15
10    51480393    .    T    C    120.18    MQFilter40    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.25;MQ0=2;MQRankSum=-0.213;QD=3.34;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    0/1:22,14:36:99:150,0,348
10    51482997    rs80267633    A    G    280.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=28.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:313,27,0
10    51483021    rs188856704    A    G    117.24    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.028;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=36.33;MQ0=1;MQRankSum=0.138;QD=4.19;ReadPosRankSum=-0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    0/1:20,8:28:99:147,0,714
10    51483070    rs142782792    G    A    457.51    MQFilter40    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.301;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.02;MQ0=7;MQRankSum=0.219;QD=5.94;ReadPosRankSum=0.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    0/1:59,18:77:99:488,0,1635
10    51483077    rs181655860    A    T    319.38    MQFilter40    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.894;DB;DP=88;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9332;MQ=31.65;MQ0=7;MQRankSum=2.43;QD=3.63;ReadPosRankSum=1.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    0/1:70,18:88:99:349,0,1590
10    51483167    .    G    A    245.58    MQFilter40;QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=1.576;DP=201;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=16.04;MQ0=127;MQRankSum=2.632;QD=1.22;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    0/1:155,46:201:99:276,0,1083
10    51483313    .    G    A    85.69    MQFilter40;QDFilter2    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.75;MQ0=37;MQRankSum=-1.666;QD=1.82;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374095    GT:AD:DP:GQ:PL    0/1:32,14:47:60.58:116,0,61
10    51549496    rs10993994    T    C    1640.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1673,123,0
10    51549545    rs4935176    G    T    2072.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2106,160,0
10    51556921    rs10994385    G    C    197.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=58.33;MQ0=0;MQRankSum=-0.421;QD=14.09;ReadPosRankSum=-1.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487536    GT:AD:DP:GQ:PL    0/1:7,7:14:99:227,0,252
10    51581143    rs17776547    A    G    136.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=11;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.44;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330923    GT:AD:DP:GQ:PL    0/1:6,5:11:99:167,0,197
10    51582894    rs41306524    C    T    503.64    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.07;DB;DP=40;Dels=0.0;FS=1.323;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.085;QD=12.59;ReadPosRankSum=1.873;SNPEFF_AMINO_ACID_CHANGE=D123;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51582796_51582939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430396    GT:AD:DP:GQ:PL    0/1:21,19:40:99:534,0,633
10    51620317    .    A    G    359.80    MQFilter40    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.206;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=13.45;MQ0=78;MQRankSum=0.16;QD=2.23;ReadPosRankSum=0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:84,77:161:99:390,0,423
10    51620499    rs78584401    G    A    573.14    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.188;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.15;MQ=23.72;MQ0=0;MQRankSum=-1.091;QD=7.96;ReadPosRankSum=1.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:42,30:72:99:603,0,959
10    51623004    .    T    C    65.08    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.61;MQ0=2;MQRankSum=1.422;QD=5.92;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:6,5:11:95.07:95,0,103
10    51623024    rs146205287    A    C    50.62    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.19;MQ0=2;MQRankSum=1.818;QD=4.22;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:7,5:12:80.61:81,0,122
10    51623052    .    C    CT    255.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DP=17;FS=0.0;HRun=2;HaplotypeScore=102.0187;IndelType=I;MQ=30.03;MQ0=2;MQRankSum=1.491;QD=12.78;ReadPosRankSum=-0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:10,10:17:99:295,0,284
10    51623061    rs115719811    G    A    240.07    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.345;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=31.05;MQ0=1;MQRankSum=1.303;QD=10.91;ReadPosRankSum=-1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:11,11:22:99:270,0,207
10    51623147    .    C    T    148.89    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DP=41;Dels=0.0;FS=5.497;HRun=1;HaplotypeScore=0.9469;MQ=17.33;MQ0=21;MQRankSum=2.271;QD=3.63;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=G23E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51623109_51623338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260867    GT:AD:DP:GQ:PL    0/1:25,16:41:99:179,0,138
10    51623174    rs141118546    C    A    66.20    MQFilter40;QDFilter2    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.86;MQ0=23;MQRankSum=2.927;QD=1.74;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=G14V;SNPEFF_CODON_CHANGE=gGa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51623109_51623338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260867    GT:AD:DP:GQ:PL    0/1:23,14:38:82.68:96,0,83
10    51623190    rs137912947    T    C    36.90    MQFilter40;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=14.01;MQ0=14;MQRankSum=1.517;QD=1.48;ReadPosRankSum=-0.684;SNPEFF_AMINO_ACID_CHANGE=N9D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51623109_51623338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260867    GT:AD:DP:GQ:PL    0/1:16,8:25:62.01:67,0,62
10    51623866    .    A    G    33.02    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=15.05;MQ0=7;MQRankSum=0.876;QD=2.06;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:9,7:16:62.02:63,0,62
10    51631508    .    T    C    129.73    MQFilter40;QDFilter2    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DP=151;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=6.63;MQ0=133;MQRankSum=1.055;QD=0.86;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:84,67:151:26.34:160,0,26
10    51631530    .    T    C    168.07    MQFilter40;QDFilter2    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.436;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.3;MQ0=122;MQRankSum=-0.39;QD=1.11;ReadPosRankSum=0.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:77,74:151:91.36:198,0,91
10    51631588    rs151316128    A    G    396.50    MQFilter40    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.901;DB;DP=174;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=11.51;MQ0=113;MQRankSum=0.264;QD=2.28;ReadPosRankSum=1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:93,81:174:99:426,0,295
10    51631812    .    A    G    906.94    MQFilter40    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.586;DP=220;DS;Dels=0.0;FS=3.633;HRun=0;HaplotypeScore=2.3604;MQ=22.29;MQ0=56;MQRankSum=-0.294;QD=4.12;ReadPosRankSum=0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:124,96:220:99:937,0,1734
10    51632855    .    A    G    73.03    MQFilter40;QDFilter2    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.109;DP=147;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.8321;MQ=10.94;MQ0=97;MQRankSum=-1.119;QD=0.5;ReadPosRankSum=-1.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:92,55:147:99:103,0,309
10    51632906    rs146420399    G    A    164.33    MQFilter40;QDFilter2    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=6.848;DB;DP=195;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=12.14;MQ0=114;MQRankSum=-0.966;QD=0.84;ReadPosRankSum=1.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:129,66:195:99:194,0,534
10    51632971    .    A    G    822.71    MQFilter40    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.155;DP=189;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7453;MQ=21.22;MQ0=51;MQRankSum=0.222;QD=4.35;ReadPosRankSum=0.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:106,83:189:99:853,0,1278
10    51633027    rs115081809    T    C    1180.49    MQFilter40    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.36;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9667;MQ=27.17;MQ0=0;MQRankSum=-0.54;QD=8.09;ReadPosRankSum=0.125;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIMM23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429265    GT:AD:DP:GQ:PL    0/1:84,62:146:99:1210,0,1871
10    51754068    .    G    A    77.45    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=4.441;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9963;MQ=48.2;MQ0=0;MQRankSum=-2.935;QD=1.38;ReadPosRankSum=-1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374056    GT:AD:DP:GQ:PL    0/1:45,10:56:99:107,0,1366
10    51754209    .    C    G    965.73    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.514;DP=129;Dels=0.0;FS=8.324;HRun=0;HaplotypeScore=1.748;MQ=44.2;MQ0=0;MQRankSum=-4.278;QD=7.49;ReadPosRankSum=-2.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374056    GT:AD:DP:GQ:PL    0/1:84,45:129:99:996,0,2456
10    51754268    rs4043242    T    C    907.23    MQFilter40    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.019;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=35.22;MQ0=1;MQRankSum=1.766;QD=13.96;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374056    GT:AD:DP:GQ:PL    0/1:23,42:65:99:937,0,563
10    51754359    .    T    C    50.17    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=33.74;MQ0=0;MQRankSum=-0.636;QD=3.58;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374056    GT:AD:DP:GQ:PL    0/1:10,4:14:80.16:80,0,251
10    51807660    rs2997958    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-324H6.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417804    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
10    51816763    rs10825006    C    T    565.35    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=2.896;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.75;MQ0=0;MQRankSum=1.621;QD=17.13;ReadPosRankSum=0.601;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-324H6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456967    GT:AD:DP:GQ:PL    0/1:14,19:33:99:595,0,444
10    51819298    rs4042922    A    C    43.51    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.95;MQ0=1;MQRankSum=-2.637;QD=3.63;ReadPosRankSum=-0.825;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-324H6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456967    GT:AD:DP:GQ:PL    0/1:6,6:12:73.50:74,0,213
10    51820695    rs28545419    A    G    3001.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.57;MQ0=1;QD=31.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-324H6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456967    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3035,232,0
10    51820704    rs3964871    T    C    3150.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.575;MQ=50.09;MQ0=1;QD=29.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-324H6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456967    GT:AD:DP:GQ:PL    1/1:0,107:108:99:3184,247,0
10    51820834    rs4935410    C    T    2607.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=52.27;MQ0=1;QD=35.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-324H6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456967    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2640,208,0
10    51820884    rs2805360    A    C    969.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.23;MQ0=4;QD=30.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-324H6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456967    GT:AD:DP:GQ:PL    1/1:0,32:32:81.22:1002,81,0
10    51820906    rs4935069    A    G    184.64    MQFilter40    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.89;MQ0=4;MQRankSum=1.466;QD=8.39;ReadPosRankSum=-2.177;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-324H6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456967    GT:AD:DP:GQ:PL    0/1:13,9:22:99:215,0,303
10    51821269    rs45510292    C    A    2118.13    MQFilter40    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.318;DB;DP=225;Dels=0.0;FS=5.891;HRun=0;HaplotypeScore=6.2786;MQ=32.72;MQ0=21;MQRankSum=0.294;QD=9.41;ReadPosRankSum=-0.574;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-324H6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456967    GT:AD:DP:GQ:PL    0/1:116,109:225:99:2148,0,2168
10    51827591    rs11597666    G    A    42.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282633    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:73,0,26
10    51827934    rs55875820    G    A    160.48    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=52.55;MQ0=1;MQRankSum=-0.289;QD=12.34;ReadPosRankSum=-1.599;SNPEFF_AMINO_ACID_CHANGE=V24M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51827865_51827987;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434114    GT:AD:DP:GQ:PL    0/1:5,8:13:99:190,0,131
10    51843781    .    G    A    188.28    MQFilter40    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=13.14;MQ0=34;MQRankSum=-1.333;QD=3.25;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282633    GT:AD:DP:GQ:PL    0/1:26,32:58:99:218,0,184
10    51853633    .    C    T    77.15    MQFilter40;QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DP=221;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7753;MQ=5.51;MQ0=197;MQRankSum=-0.263;QD=0.35;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=T273M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_51853620_51853677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434114    GT:AD:DP:GQ:PL    0/1:176,45:221:99:107,0,119
10    51853786    .    G    A    130.20    MQFilter40    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=0.304;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6643;MQ=12.95;MQ0=27;MQRankSum=-1.747;QD=2.77;ReadPosRankSum=1.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492914    GT:AD:DP:GQ:PL    0/1:35,12:47:99:160,0,187
10    51859715    .    C    CA    255.50    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DP=19;FS=0.0;HRun=0;HaplotypeScore=70.987;IndelType=I;MQ=14.95;MQ0=60;MQRankSum=0.0;QD=2.46;ReadPosRankSum=-0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282633    GT:AD:DP:GQ:PL    0/1:34,70:19:24.28:295,0,24
10    51890577    rs78369021    T    C    115.94    MQFilter40;QDFilter2    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.088;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.92;MQ0=12;MQRankSum=-5.21;QD=1.87;ReadPosRankSum=0.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454806    GT:AD:DP:GQ:PL    0/1:34,28:62:99:146,0,1206
10    51974685    .    C    T    224.60    MQFilter40    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DP=32;Dels=0.0;FS=11.634;HRun=0;HaplotypeScore=0.0;MQ=24.94;MQ0=1;MQRankSum=0.415;QD=7.02;ReadPosRankSum=-0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329428    GT:AD:DP:GQ:PL    0/1:17,15:32:99:255,0,243
10    52007969    rs2813305    G    A    76.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329428    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
10    52008074    rs2813304    T    C    451.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329428    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:484,36,0
10    52008140    rs7071083    C    T    882.40    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.54;MQ0=0;MQRankSum=-0.292;QD=17.65;ReadPosRankSum=1.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329428    GT:AD:DP:GQ:PL    0/1:23,27:50:99:912,0,769
10    52025167    rs2574943    A    G    2374.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=55.23;MQ0=0;MQRankSum=0.996;QD=29.68;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374028    GT:AD:DP:GQ:PL    1/1:1,79:80:99:2408,162,0
10    52026442    rs2842129    C    T    5279.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DB;DP=152;Dels=0.0;FS=3.79;HRun=1;HaplotypeScore=2.7886;MQ=50.01;MQ0=4;MQRankSum=-0.86;QD=34.74;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374028    GT:AD:DP:GQ:PL    1/1:1,150:152:99:5280,378,0
10    52026652    rs2574947    A    G    663.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.59;MQ0=2;QD=26.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374028    GT:AD:DP:GQ:PL    1/1:0,25:25:63.17:696,63,0
10    52070902    rs7913957    G    C    69.04    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.67;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361781    GT:AD:DP:GQ:PL    0/1:6,3:9:99:99,0,181
10    52070947    rs2251601    T    C    169.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.581;QD=12.12;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361781    GT:AD:DP:GQ:PL    0/1:8,6:14:99:200,0,253
10    52086939    rs2246994    C    G    314.21    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.797;DB;DP=36;Dels=0.0;FS=13.882;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.802;QD=8.73;ReadPosRankSum=0.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361543    GT:AD:DP:GQ:PL    0/1:21,15:36:99:344,0,621
10    52103707    rs10763354    A    G    559.18    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.085;DB;DP=44;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=0.806;QD=12.71;ReadPosRankSum=-0.924;SNPEFF_AMINO_ACID_CHANGE=N56;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_52103252_52104006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361543    GT:AD:DP:GQ:PL    0/1:25,19:44:99:589,0,852
10    52419282    rs3001857    A    G    155.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-564C4.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449695    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
10    52420020    rs17497903    G    A    31.18    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.43;MQ0=0;MQRankSum=-0.198;QD=4.45;ReadPosRankSum=-0.198;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-564C4.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449695    GT:AD:DP:GQ:PL    0/1:5,2:7:61.17:61,0,179
10    52436582    rs3011740    T    C    399.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.1;MQ0=0;QD=33.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:433,36,0
10    52438857    rs3001867    C    T    132.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
10    52439015    rs145722347    C    T    323.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.35;DB;DP=20;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.5784;MQ=59.06;MQ0=0;MQRankSum=0.039;QD=16.18;ReadPosRankSum=-0.347;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    0/1:8,12:20:99:354,0,259
10    52439506    rs117030877    A    G    419.40    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.694;DB;DP=30;Dels=0.0;FS=8.129;HRun=0;HaplotypeScore=0.0;MQ=21.01;MQ0=10;MQRankSum=-1.734;QD=13.98;ReadPosRankSum=0.347;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:1,29:30:13.25:452,13,0
10    52439870    rs3011746    A    G    33.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.74;MQ0=0;QD=16.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
10    52442590    rs3011754    G    C    77.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=19.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
10    52443387    rs3001869    C    G    1363.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.04;MQ0=3;QD=20.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1396,129,0
10    52444482    .    C    CTTTA    2382.38    PASS    AC=2;AF=1.00;AN=2;DP=29;FS=0.0;HRun=0;HaplotypeScore=247.7419;IndelType=I;MQ=46.25;MQ0=0;QD=59.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:0,40:29:87.30:2424,87,0
10    52444484    .    GCC    G    1413.61    PASS    AC=2;AF=1.00;AN=2;DP=30;FS=0.0;HRun=2;HaplotypeScore=320.7525;IndelType=D;MQ=46.64;MQ0=0;QD=34.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:1,40:30:90.31:1456,90,0
10    52444544    rs11006637    C    T    1400.59    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.205;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7649;MQ=44.38;MQ0=1;MQRankSum=0.169;QD=13.21;ReadPosRankSum=0.677;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    0/1:50,56:106:99:1431,0,1245
10    52444642    rs7894307    C    A    4904.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.777;DB;DP=159;Dels=0.0;FS=3.104;HRun=0;HaplotypeScore=0.0;MQ=47.5;MQ0=1;MQRankSum=1.332;QD=30.85;ReadPosRankSum=0.422;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-564C4.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442076    GT:AD:DP:GQ:PL    1/1:2,157:159:99:4905,354,0
10    52502450    rs56033380    A    C    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.96;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASAH2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000185907    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:74,0,30
10    52571047    rs4469834    C    T    193.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=24.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A1CF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282641    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:226,18,0
10    52576068    rs4245008    G    A    375.73    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DB;DP=25;Dels=0.0;FS=1.718;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.192;QD=15.03;ReadPosRankSum=-0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A1CF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282641    GT:AD:DP:GQ:PL    0/1:11,14:25:99:406,0,324
10    52751070    rs79957958    AGCCGCCGCC    A    548.30    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=221.5619;IndelType=D;MQ=47.73;MQ0=0;MQRankSum=-0.867;QD=26.11;ReadPosRankSum=0.372;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373985    GT:AD:DP:GQ:PL    0/1:8,8:21:99:587,0,1064
10    52913020    rs55806342    G    A    996.67    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=0.725;DB;DP=61;Dels=0.0;FS=1.142;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.046;QD=16.34;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=P109;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_52912924_52913090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373985    GT:AD:DP:GQ:PL    0/1:26,35:61:99:1027,0,798
10    53667443    rs10823860    C    T    116.28    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.271;QD=8.94;ReadPosRankSum=2.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373976    GT:AD:DP:GQ:PL    0/1:8,5:13:99:146,0,277
10    53667476    rs7081919    G    A    74.83    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=10.69;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373976    GT:AD:DP:GQ:PL    0/1:3,4:7:99:105,0,108
10    53814229    rs1904010    G    T    348.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.017;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.195;QD=9.95;ReadPosRankSum=0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332193    GT:AD:DP:GQ:PL    0/1:21,14:35:99:378,0,688
10    53814383    rs12778630    C    T    269.69    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=23;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=11.73;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332193    GT:AD:DP:GQ:PL    0/1:13,10:23:99:300,0,404
10    53822301    rs34997494    A    G    236.14    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=26;Dels=0.0;FS=3.909;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.986;QD=9.08;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=N140S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_53822297_53822391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373976    GT:AD:DP:GQ:PL    0/1:15,11:26:99:266,0,550
10    53921754    rs10824173    C    A    941.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332193    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:974,75,0
10    54031443    rs1194516    T    C    126.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332193    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
10    54050079    rs10762675    G    A    806.91    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.2;DB;DP=64;Dels=0.0;FS=6.883;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.047;QD=12.61;ReadPosRankSum=-1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332193    GT:AD:DP:GQ:PL    0/1:34,30:64:99:837,0,1165
10    54074757    rs2241529    A    G    407.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=27.18;SNPEFF_AMINO_ACID_CHANGE=A106;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_54074683_54074845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373970    GT:AD:DP:GQ:PL    1/1:0,15:15:39.09:441,39,0
10    54076271    rs1569198    A    G    2180.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467359    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2213,168,0
10    54528266    rs930507    G    C    1070.34    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.65;MQ0=0;MQRankSum=-1.439;QD=16.22;ReadPosRankSum=0.848;SNPEFF_AMINO_ACID_CHANGE=L126;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_54525140_54528270;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373968    GT:AD:DP:GQ:PL    0/1:31,35:66:99:1100,0,889
10    54528298    rs930508    G    C    707.04    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.414;DB;DP=49;Dels=0.0;FS=8.374;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=2.114;QD=14.43;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373968    GT:AD:DP:GQ:PL    0/1:23,26:49:99:737,0,753
10    54528353    rs930509    C    G    448.13    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.209;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.181;QD=21.34;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373968    GT:AD:DP:GQ:PL    0/1:8,13:21:99:478,0,257
10    54530636    rs1982266    A    G    575.63    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.012;QD=12.51;ReadPosRankSum=-1.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373968    GT:AD:DP:GQ:PL    0/1:25,21:46:99:606,0,819
10    54530694    rs1982267    G    T    565.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373968    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:599,45,0
10    54530788    .    C    T    32.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.0;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373968    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:63,0,32
10    55571403    .    C    T    794.32    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.856;DP=63;Dels=0.0;FS=2.359;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.268;QD=12.61;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373965    GT:AD:DP:GQ:PL    0/1:33,30:63:99:824,0,1080
10    55626367    rs10825135    A    G    1029.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,28:28:81.25:1063,81,0
10    55626703    .    G    A    177.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=14.77;ReadPosRankSum=-1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    0/1:6,6:12:99:207,0,212
10    55626750    rs7904289    G    A    172.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
10    55663198    rs10740559    A    C    928.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:961,72,0
10    55663202    rs2593124    T    C    844.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:878,66,0
10    55719652    rs2593107    C    T    1023.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,28:28:78.23:1056,78,0
10    55721761    rs2456699    A    G    197.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:231,18,0
10    55721844    rs35953842    G    GT    183.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=13.2776;IndelType=I;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
10    55755303    rs78521134    T    C    285.52    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.031;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=16.8;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    0/1:8,9:17:99:316,0,235
10    55779915    rs3812658    G    A    478.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,14:14:42.07:512,42,0
10    55826470    rs3812657    A    G    290.50    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.799;DB;DP=38;Dels=0.0;FS=4.936;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.469;QD=7.64;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    0/1:24,14:38:99:320,0,849
10    55838950    rs1911433    A    G    523.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:557,42,0
10    55943184    rs7093302    T    C    1948.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.61;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1982,144,0
10    55973589    rs10825279    C    T    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
10    55973889    rs10763086    G    A    289.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
10    55996408    rs7915391    A    T    107.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:140,12,0
10    55996761    rs721825    C    T    584.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:618,48,0
10    56076975    rs10763098    A    C    757.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:790,57,0
10    56077209    rs10740579    G    A    2313.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2346,172,0
10    56089166    rs11004239    C    T    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
10    56089223    rs11004240    A    G    324.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:357,27,0
10    56089263    rs857395    G    A    613.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:647,48,0
10    56089567    rs7342012    C    T    463.79    PASS    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=0.25;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.25;QD=24.41;ReadPosRankSum=0.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    0/1:4,15:19:99:494,0,113
10    56287689    rs10825347    A    C    395.51    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.522;DB;DP=29;Dels=0.0;FS=2.124;HRun=0;HaplotypeScore=3.5862;MQ=59.2;MQ0=0;MQRankSum=-0.153;QD=13.64;ReadPosRankSum=-1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    0/1:13,16:29:99:425,0,420
10    56288081    rs11004349    G    A    145.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-1.683;QD=16.19;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320301    GT:AD:DP:GQ:PL    0/1:3,6:9:89.02:176,0,89
10    58119976    rs3861049    G    A    1092.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZWINT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361148    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1126,81,0
10    60095143    rs1905456    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373910    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    60121414    rs11593650    A    G    435.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373910    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:468,36,0
10    60273121    rs7100474    T    C    655.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=55.45;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373886    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:689,54,0
10    60273155    rs7079648    C    A    259.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=16.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373886    GT:AD:DP:GQ:PL    1/1:2,13:16:27.05:293,27,0
10    60273189    rs10571555    ACGGC    A    335.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=119.9458;IndelType=D;MQ=52.81;MQ0=0;QD=27.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373886    GT:AD:DP:GQ:PL    1/1:5,7:12:21.07:378,21,0
10    60475723    rs3816114    C    T    1011.98    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=1.738;DB;DP=84;Dels=0.0;FS=4.686;HRun=0;HaplotypeScore=0.9159;MQ=43.59;MQ0=8;MQRankSum=-1.495;QD=12.05;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373886    GT:AD:DP:GQ:PL    0/1:36,47:84:99:1042,0,811
10    60545061    rs11006261    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373886    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    60548276    rs11812567    G    A    359.96    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.717;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.989;QD=20.0;ReadPosRankSum=-2.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373886    GT:AD:DP:GQ:PL    0/1:7,11:18:99:390,0,244
10    60548833    rs7087592    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373886    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    60562953    rs138916713    A    C    502.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.538;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7825;MQ=60.0;MQ0=0;MQRankSum=-1.499;QD=15.69;ReadPosRankSum=-1.927;SNPEFF_AMINO_ACID_CHANGE=N337T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_60562837_60563002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263103    GT:AD:DP:GQ:PL    0/1:12,20:32:99:532,0,348
10    60896265    rs1897620    G    A    730.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-561G1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429404    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:763,57,0
10    60996453    rs10763600    G    A    519.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYHIPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373878    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:552,42,0
10    61005244    rs2452505    G    C    2259.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.72;MQ0=0;MQRankSum=-1.575;QD=34.24;ReadPosRankSum=-1.312;SNPEFF_AMINO_ACID_CHANGE=V316L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_61004817_61007534;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHYHIPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373878    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2293,140,0
10    61007534    rs1459996    A    G    1319.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435852    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1352,99,0
10    61007592    rs2446724    G    A    299.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435852    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:333,24,0
10    61012919    rs2446721    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
10    61014056    rs1903252    C    A    3008.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.46;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277705    GT:AD:DP:GQ:PL    1/1:1,84:85:99:3041,223,0
10    61022054    rs1459990    G    A    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468696    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    61043451    rs284618    G    C    145.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277705    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
10    61083690    rs34090373    A    AGTTG    2856.20    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.821;DB;DP=61;FS=0.0;HRun=0;HaplotypeScore=277.1762;IndelType=I;MQ=53.59;MQ0=0;MQRankSum=-1.53;QD=46.82;ReadPosRankSum=-0.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504410    GT:AD:DP:GQ:PL    0/1:30,29:61:99:2895,0,984
10    61111975    rs284606    G    C    731.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503444    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:764,60,0
10    61122268    rs3078330    T    TTA    1274.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=54.5964;IndelType=I;MQ=60.18;MQ0=0;QD=53.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468840    GT:AD:DP:GQ:PL    1/1:2,22:24:66.23:1316,66,0
10    61413353    rs12356193    A    G    132.48    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=10.19;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395347    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,282
10    61444091    rs34715719    C    T    871.79    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.846;DB;DP=61;Dels=0.0;FS=1.509;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.503;QD=14.29;ReadPosRankSum=-1.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395347    GT:AD:DP:GQ:PL    0/1:29,32:61:99:902,0,875
10    61552774    rs1053265    C    T    508.63    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.9;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.686;QD=15.89;ReadPosRankSum=0.598;SNPEFF_AMINO_ACID_CHANGE=P442;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_61548521_61552869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263102    GT:AD:DP:GQ:PL    0/1:14,17:32:99:539,0,277
10    61554006    rs2271564    A    C    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.99;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263102    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,150
10    61564020    rs3841635    CTT    C    168.81    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=25.4424;IndelType=D;MQ=58.91;MQ0=0;MQRankSum=0.736;QD=28.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518638    GT:AD:DP:GQ:PL    0/1:1,5:6:38.29:208,0,38
10    61572720    rs7909766    G    C    169.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263102    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
10    61572732    rs7894842    T    G    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263102    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
10    61574357    rs140533308    A    AAC    169.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=47.3855;IndelType=I;MQ=61.67;MQ0=0;MQRankSum=0.684;QD=14.12;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263102    GT:AD:DP:GQ:PL    0/1:6,6:12:80.97:208,0,81
10    61592447    rs6479653    G    C    331.49    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.692;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.734;QD=13.26;ReadPosRankSum=-0.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263102    GT:AD:DP:GQ:PL    0/1:13,12:25:99:361,0,440
10    61612159    rs17791484    C    T    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.57;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263102    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:64,0,68
10    61612199    rs2271561    T    C    137.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=13.73;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263102    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,142
10    61802342    rs2393603    C    A    174.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=14.55;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373817    GT:AD:DP:GQ:PL    0/1:6,6:12:99:205,0,208
10    61802353    rs2393604    A    T    240.38    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=-0.433;QD=14.14;ReadPosRankSum=-0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373817    GT:AD:DP:GQ:PL    0/1:8,9:17:99:270,0,281
10    61802375    rs2393606    A    T    59.04    QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.701;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=57.66;MQ0=0;MQRankSum=-1.576;QD=1.97;ReadPosRankSum=0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373817    GT:AD:DP:GQ:PL    0/1:15,15:30:89.04:89,0,563
10    61802561    rs2393607    G    T    714.20    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=4.321;DB;DP=41;Dels=0.0;FS=7.586;HRun=2;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-1.957;QD=17.42;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:18,23:41:99:744,0,565
10    61802577    rs5785427    T    TC    1538.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=2;HaplotypeScore=153.059;IndelType=I;MQ=59.93;MQ0=0;QD=41.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1580,111,0
10    61815335    rs2393609    C    A    725.64    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.208;DB;DP=68;Dels=0.0;FS=2.241;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.501;QD=10.67;ReadPosRankSum=-0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469721    GT:AD:DP:GQ:PL    0/1:36,32:68:99:756,0,1236
10    61815367    rs4948384    C    T    1309.24    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.139;DB;DP=106;Dels=0.0;FS=6.35;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.335;QD=12.35;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469721    GT:AD:DP:GQ:PL    0/1:57,49:106:99:1339,0,1857
10    61819049    rs10733757    T    G    1095.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459732    GT:AD:DP:GQ:PL    1/1:0,36:36:96.27:1128,96,0
10    61822754    rs17208182    G    C    42.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.55;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:2,2:4:69.18:72,0,69
10    61823109    rs4568956    A    G    137.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=13.79;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,175
10    61828954    rs7923682    G    A    1813.77    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=4.87;DB;DP=141;Dels=0.0;FS=10.729;HRun=0;HaplotypeScore=0.5784;MQ=59.67;MQ0=0;MQRankSum=0.391;QD=12.86;ReadPosRankSum=0.463;SNPEFF_AMINO_ACID_CHANGE=S3895;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_61828395_61836206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:76,65:141:99:1844,0,2195
10    61831290    rs28932171    T    C    1624.46    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=136;Dels=0.0;FS=5.206;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-1.213;QD=11.86;ReadPosRankSum=-0.007;SNPEFF_AMINO_ACID_CHANGE=I3117V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_61828395_61836206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:70,65:136:99:1654,0,2053
10    61831984    rs11599164    G    T    733.79    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.719;DB;DP=63;Dels=0.0;FS=13.77;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=11.65;ReadPosRankSum=-0.286;SNPEFF_AMINO_ACID_CHANGE=H2885Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_61828395_61836206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:37,26:63:99:764,0,1260
10    61834573    rs17208576    G    A    1125.05    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=2.11;DB;DP=83;Dels=0.0;FS=7.575;HRun=0;HaplotypeScore=1.7046;MQ=59.78;MQ0=0;MQRankSum=-0.213;QD=13.55;ReadPosRankSum=-1.228;SNPEFF_AMINO_ACID_CHANGE=A2022;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_61828395_61836206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1155,0,1353
10    61840167    rs7917800    C    T    343.39    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.24;QD=22.89;ReadPosRankSum=-1.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395293    GT:AD:DP:GQ:PL    0/1:4,11:15:99:373,0,122
10    61840460    rs2241540    G    A    286.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.709;QD=19.1;ReadPosRankSum=-1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508449    GT:AD:DP:GQ:PL    0/1:6,9:15:99:317,0,205
10    61842498    rs2393595    A    G    774.03    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.004;DB;DP=43;Dels=0.0;FS=5.691;HRun=1;HaplotypeScore=2.7547;MQ=60.0;MQ0=0;MQRankSum=-0.216;QD=18.0;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465749    GT:AD:DP:GQ:PL    0/1:19,24:43:99:804,0,496
10    61843451    rs10509122    G    A    281.58    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.986;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.812;QD=9.71;ReadPosRankSum=1.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465749    GT:AD:DP:GQ:PL    0/1:19,10:29:99:312,0,674
10    61843475    rs41274682    T    C    230.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=14.41;ReadPosRankSum=0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465749    GT:AD:DP:GQ:PL    0/1:8,8:16:99:261,0,280
10    61843521    rs41274684    C    T    61.65    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=8.81;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465749    GT:AD:DP:GQ:PL    0/1:2,5:7:67.21:92,0,67
10    61847681    rs10761452    C    T    31.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:2,2:4:61.27:61,0,71
10    61865449    rs11593565    A    G    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.42;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373815    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
10    61868716    rs3750800    C    A    705.62    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=50;Dels=0.0;FS=1.154;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=14.11;ReadPosRankSum=-1.926;SNPEFF_AMINO_ACID_CHANGE=T1009;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_61868588_61868812;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373827    GT:AD:DP:GQ:PL    0/1:21,29:50:99:736,0,580
10    61900356    rs6479694    A    C    31.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=10.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:63,6,0
10    61914223    rs7096190    T    C    465.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:498,39,0
10    61926728    rs11814723    A    G    643.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.96;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    1/1:0,17:18:51.14:676,51,0
10    61926866    rs10509125    C    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    61940899    rs2288358    A    G    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    61965316    rs12411380    T    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    62021781    rs41283532    C    T    304.28    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=21.73;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:3,11:14:75.86:334,0,76
10    62039577    rs7910984    C    T    77.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.48;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280772    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:108,0,28
10    62444061    rs10761547    C    T    109.05    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=8.39;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373827    GT:AD:DP:GQ:PL    0/1:8,5:13:99:139,0,281
10    62444822    rs1837949    T    C    1507.57    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.135;DB;DP=106;Dels=0.0;FS=1.57;HRun=0;HaplotypeScore=0.5784;MQ=59.78;MQ0=0;MQRankSum=-0.317;QD=14.22;ReadPosRankSum=-0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373827    GT:AD:DP:GQ:PL    0/1:57,49:106:99:1538,0,1970
10    62444965    rs1837950    T    C    1993.17    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.372;DB;DP=165;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8627;MQ=59.71;MQ0=0;MQRankSum=1.287;QD=12.08;ReadPosRankSum=-0.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373827    GT:AD:DP:GQ:PL    0/1:91,74:165:99:2023,0,2874
10    62539788    rs2260179    C    G    34.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.73;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316629    GT:AD:DP:GQ:PL    0/1:4,2:6:64.35:64,0,148
10    62540063    rs2448344    T    A    254.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316629    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
10    62544858    rs3213046    T    C    76.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.13;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519760    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:106,0,29
10    62548098    rs2456772    G    C    1531.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475504    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1565,123,0
10    62551815    rs3212319    GC    G    416.50    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=3.139;DB;DP=30;FS=5.71;HRun=1;HaplotypeScore=133.5197;IndelType=D;MQ=60.36;MQ0=0;MQRankSum=-0.084;QD=13.88;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475504    GT:AD:DP:GQ:PL    0/1:17,13:30:99:456,0,712
10    62551889    rs2456777    A    G    1295.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=24.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487784    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1328,129,0
10    62551890    rs2456778    A    T    1250.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=24.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487784    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1284,126,0
10    62553763    rs1871446    A    G    2472.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487784    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2505,181,0
10    62632162    rs76522289    C    T    69.64    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.7;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483488    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,148
10    62634621    rs2279942    C    T    322.40    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.023;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.454;QD=16.12;ReadPosRankSum=-1.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483488    GT:AD:DP:GQ:PL    0/1:8,12:20:99:352,0,284
10    62645873    rs2271128    A    G    1256.65    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.521;DB;DP=91;Dels=0.0;FS=0.829;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-1.56;QD=13.81;ReadPosRankSum=-1.297;SNPEFF_AMINO_ACID_CHANGE=S524;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_62645870_62645988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOBTB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337910    GT:AD:DP:GQ:PL    0/1:42,49:91:99:1287,0,1316
10    63520698    rs1992625    T    C    1945.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=F163;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_63520621_63520761;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf107;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330194    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1979,153,0
10    63661340    rs4509706    T    C    118.75    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.34;QD=6.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_63661059_63661489;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279873    GT:AD:DP:GQ:PL    0/1:12,5:17:99:149,0,391
10    63661732    .    GTTT    G    69.29    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DP=22;FS=0.0;HRun=19;HaplotypeScore=258.0504;IndelType=D;MQ=34.89;MQ0=0;MQRankSum=-1.247;QD=3.15;ReadPosRankSum=-1.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279873    GT:AD:DP:GQ:PL    0/1:11,7:22:99:108,0,357
10    63699895    rs7073837    A    C    290.36    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=18.15;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279873    GT:AD:DP:GQ:PL    0/1:6,10:16:99:320,0,200
10    63700228    rs4360655    A    T    35.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.1;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279873    GT:AD:DP:GQ:PL    0/1:3,2:5:65.50:65,0,109
10    63810458    rs3740355    C    A    76.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279873    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:106,0,28
10    63818920    rs3832683    GA    G    225.55    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.85;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=38.4893;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=-0.303;QD=14.1;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279873    GT:AD:DP:GQ:PL    0/1:4,12:16:76.93:265,0,77
10    63852965    rs4948506    C    G    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309334    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,140
10    63875960    rs7923071    G    A    40.99    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.642;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.057;QD=2.41;ReadPosRankSum=0.962;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL671972.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408167    GT:AD:DP:GQ:PL    0/1:13,4:17:70.98:71,0,401
10    63943986    rs11297358    GT    G    317.18    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=24;FS=0.0;HRun=2;HaplotypeScore=58.7721;IndelType=D;MQ=60.45;MQ0=0;MQRankSum=1.333;QD=13.22;ReadPosRankSum=0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395265    GT:AD:DP:GQ:PL    0/1:13,11:24:99:356,0,512
10    63944176    rs3125730    A    C    1217.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1251,96,0
10    63944188    rs7903510    A    G    573.59    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.933;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=15.5;ReadPosRankSum=0.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:15,22:37:99:604,0,438
10    63958112    rs3125734    T    C    767.49    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.417;DB;DP=82;Dels=0.0;FS=3.023;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.726;QD=9.36;ReadPosRankSum=-0.476;SNPEFF_AMINO_ACID_CHANGE=H264R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_63958042_63958202;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:48,34:82:99:797,0,1528
10    63974950    rs4559572    C    G    168.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-0.295;QD=11.26;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:9,6:15:99:199,0,317
10    63977011    rs71022122    GAAAAA    G    1319.30    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=0.841;DB;DP=135;FS=0.0;HRun=18;HaplotypeScore=1087.5665;IndelType=D;MQ=51.79;MQ0=0;MQRankSum=-2.016;QD=9.77;ReadPosRankSum=4.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:70,43:135:99:1358,0,3565
10    63977069    rs1432414    A    T    713.21    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=3.834;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.03;MQ0=0;MQRankSum=-2.159;QD=11.5;ReadPosRankSum=0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:33,29:62:99:743,0,1032
10    63978077    rs11355398    GA    G    228.06    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=4.429;DB;DP=41;FS=1.713;HRun=11;HaplotypeScore=133.811;IndelType=D;MQ=59.54;MQ0=0;MQRankSum=-1.247;QD=5.56;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:23,18:41:99:267,0,477
10    63978232    rs4147232    A    T    63.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.75;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:2,3:5:64.97:94,0,65
10    63982984    rs10740069    A    G    623.30    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.37;DB;DP=50;Dels=0.0;FS=2.838;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.07;QD=12.47;ReadPosRankSum=-0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:25,24:50:99:653,0,816
10    63983264    rs6479792    T    G    97.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=16.18;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315289    GT:AD:DP:GQ:PL    0/1:2,4:6:64.95:127,0,65
10    63995983    rs3852448    C    T    243.52    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.444;DB;DP=31;Dels=0.0;FS=3.681;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.782;QD=7.86;ReadPosRankSum=-0.232;SNPEFF_AMINO_ACID_CHANGE=V176;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_63995825_63996022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373789    GT:AD:DP:GQ:PL    0/1:21,10:31:99:274,0,649
10    64000878    rs1368158    T    G    123.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=24;Dels=0.0;FS=1.893;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.072;QD=5.14;ReadPosRankSum=-1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373789    GT:AD:DP:GQ:PL    0/1:16,8:24:99:153,0,497
10    64001114    rs1368157    T    C    37.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.44;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373789    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:68,0,30
10    64005711    rs3815999    C    T    824.53    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=44;Dels=0.0;FS=1.976;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.825;QD=18.74;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373789    GT:AD:DP:GQ:PL    0/1:18,26:44:99:855,0,538
10    64022747    rs3852408    A    T    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373789    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:70,0,34
10    64136751    rs1873686    G    C    810.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF365;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421210    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:844,66,0
10    64148125    rs3852424    C    A    652.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF365;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395254    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:686,51,0
10    64148369    rs2893897    A    G    407.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.44;MQ0=0;QD=37.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF365;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395254    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:441,33,0
10    64159333    rs3758490    G    T    4940.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.85;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=A337S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64159287_64162217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF365;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395254    GT:AD:DP:GQ:PL    1/1:0,152:153:99:4941,367,0
10    64415184    rs7076156    A    G    2043.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=T62A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64415127_64415391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF365;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395251    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2077,171,0
10    64415413    rs7094595    T    A    541.97    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.255;DB;DP=46;Dels=0.0;FS=3.108;HRun=1;HaplotypeScore=5.3298;MQ=58.07;MQ0=0;MQRankSum=-0.321;QD=11.78;ReadPosRankSum=1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF365;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395249    GT:AD:DP:GQ:PL    0/1:26,20:46:99:572,0,882
10    64416290    rs12776269    A    G    185.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.659;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.042;QD=8.83;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF365;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395249    GT:AD:DP:GQ:PL    0/1:12,9:21:99:215,0,377
10    64426056    rs4746516    G    T    42.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=10.71;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF365;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395249    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:73,0,32
10    64564892    rs2236295    G    T    122.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=58.05;MQ0=0;MQRankSum=-0.583;QD=10.2;ReadPosRankSum=1.718;SNPEFF_AMINO_ACID_CHANGE=G25W;SNPEFF_CODON_CHANGE=Ggg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64564516_64568238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373783    GT:AD:DP:GQ:PL    0/1:6,6:12:99:152,0,141
10    64564934    rs10995311    C    G    161.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.568;QD=13.48;ReadPosRankSum=-1.568;SNPEFF_AMINO_ACID_CHANGE=P39A;SNPEFF_CODON_CHANGE=Ccg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64564516_64568238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373783    GT:AD:DP:GQ:PL    0/1:4,8:12:99:192,0,122
10    64573771    rs224083    C    T    1120.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.4;MQ0=0;QD=29.49;SNPEFF_AMINO_ACID_CHANGE=P159;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64571763_64574228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411732    GT:AD:DP:GQ:PL    1/1:0,37:38:99:1154,99,0
10    64893433    rs2175197    T    C    91.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277746    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
10    64914016    rs35751397    T    TA    236.80    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;FS=3.358;HRun=2;HaplotypeScore=29.5562;IndelType=I;MQ=57.7;MQ0=0;MQRankSum=0.935;QD=18.22;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395241    GT:AD:DP:GQ:PL    0/1:6,7:13:99:276,0,195
10    64927823    rs1935    C    G    1150.76    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.074;DB;DP=84;Dels=0.0;FS=3.071;HRun=0;HaplotypeScore=1.5518;MQ=59.73;MQ0=0;MQRankSum=-0.506;QD=13.7;ReadPosRankSum=0.909;SNPEFF_AMINO_ACID_CHANGE=E2298D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64926990_64927894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402544    GT:AD:DP:GQ:PL    0/1:40,44:84:99:1181,0,1168
10    64937501    rs34491125    G    C    402.73    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.151;DB;DP=42;Dels=0.0;FS=2.687;HRun=0;HaplotypeScore=1.8997;MQ=60.0;MQ0=0;MQRankSum=1.151;QD=9.59;ReadPosRankSum=-0.04;SNPEFF_AMINO_ACID_CHANGE=D2163E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64937477_64937616;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402544    GT:AD:DP:GQ:PL    0/1:25,17:42:99:433,0,783
10    64944317    rs10740107    T    A    1512.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=28.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497922    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1546,135,0
10    64945364    rs3211105    G    A    2464.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.697;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.258;MQ=60.0;MQ0=0;MQRankSum=1.057;QD=32.01;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=D2026;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64945323_64945413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402544    GT:AD:DP:GQ:PL    1/1:1,76:77:99:2497,144,0
10    64953311    rs4747098    G    A    709.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399251    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:742,54,0
10    64953959    rs2306264    C    G    175.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.835;QD=14.59;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399251    GT:AD:DP:GQ:PL    0/1:4,8:12:99:205,0,139
10    64960536    rs10465990    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399251    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
10    64967445    rs1904294    A    T    3469.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=R1109;SNPEFF_CODON_CHANGE=cgT/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64966355_64968561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399251    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3469,262,0
10    64974537    rs10761725    A    T    3085.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=S245T;SNPEFF_CODON_CHANGE=Tcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_64973233_64974911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399251    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3118,238,0
10    65139945    rs7477425    T    C    276.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399251    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:309,24,0
10    65225131    rs2393979    A    G    176.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JMJD1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399251    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:210,18,0
10    65322464    rs36027145    A    ATCAG    1051.16    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.099;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=203.3733;IndelType=I;MQ=59.35;MQ0=0;MQRankSum=-0.86;QD=18.77;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298249    GT:AD:DP:GQ:PL    0/1:39,16:56:99:1090,0,1712
10    65357541    rs61855876    C    T    38.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=9.58;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298249    GT:AD:DP:GQ:PL    0/1:2,2:4:68.30:68,0,71
10    65928826    rs10740151    T    C    1191.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.53;MQ0=0;QD=35.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-386C23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412976    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1224,93,0
10    68138722    rs9414919    T    C    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=8.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373744    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:63,0,61
10    68139142    rs12761828    G    A    536.30    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.245;DB;DP=45;Dels=0.0;FS=1.661;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.747;QD=11.92;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373744    GT:AD:DP:GQ:PL    0/1:25,20:45:99:566,0,808
10    68525825    rs7083123    T    C    32.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.71;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494580    GT:AD:DP:GQ:PL    0/1:5,2:7:62.93:63,0,163
10    68534940    rs4291568    G    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373744    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    68535082    rs5785786    C    CT    263.37    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.062;DB;DP=21;FS=0.0;HRun=7;HaplotypeScore=47.0222;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.247;QD=12.54;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373744    GT:AD:DP:GQ:PL    0/1:10,11:21:99:302,0,225
10    68857184    rs10822976    A    G    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373744    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:71,0,32
10    68979343    rs4745933    C    G    1345.45    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=127;Dels=0.0;FS=4.89;HRun=0;HaplotypeScore=0.9789;MQ=59.82;MQ0=0;MQRankSum=-0.495;QD=10.59;ReadPosRankSum=-0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373744    GT:AD:DP:GQ:PL    0/1:77,49:127:99:1375,0,2346
10    69106644    rs16924402    C    T    72.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.46;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373744    GT:AD:DP:GQ:PL    0/1:2,3:5:62.31:102,0,62
10    69281495    rs10509289    C    G    210.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=15.06;ReadPosRankSum=0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330298    GT:AD:DP:GQ:PL    0/1:6,8:14:99:241,0,199
10    69281585    rs10997691    A    C    793.45    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.721;QD=16.53;ReadPosRankSum=0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330298    GT:AD:DP:GQ:PL    0/1:20,28:48:99:823,0,536
10    69281732    rs7903421    A    G    337.46    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=2.311;DB;DP=42;Dels=0.0;FS=1.435;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.77;QD=8.03;ReadPosRankSum=0.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330298    GT:AD:DP:GQ:PL    0/1:29,13:42:99:367,0,869
10    69299372    rs61749224    T    G    506.90    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.472;DB;DP=56;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=59.59;MQ0=0;MQRankSum=1.339;QD=9.05;ReadPosRankSum=0.247;SNPEFF_AMINO_ACID_CHANGE=P116;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69299261_69299427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330298    GT:AD:DP:GQ:PL    0/1:32,24:56:99:537,0,985
10    69299446    rs1909654    T    A    313.07    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.957;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=12.04;ReadPosRankSum=1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330298    GT:AD:DP:GQ:PL    0/1:14,12:26:99:343,0,452
10    69366602    rs3750863    T    C    860.25    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=1.281;DB;DP=45;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.012;QD=19.12;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330298    GT:AD:DP:GQ:PL    0/1:17,28:45:99:890,0,427
10    69571336    rs3740049    G    A    1420.10    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.881;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=-0.215;QD=14.79;ReadPosRankSum=-0.444;SNPEFF_AMINO_ACID_CHANGE=S81;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69571282_69571421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225171    GT:AD:DP:GQ:PL    0/1:41,55:96:99:1450,0,1195
10    69597786    rs2273771    G    A    230.80    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.894;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.264;QD=8.24;ReadPosRankSum=-0.743;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_69597692_69597922;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225171    GT:AD:DP:GQ:PL    0/1:18,10:28:99:261,0,517
10    69647332    rs932657    G    T    378.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000212015    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:411,33,0
10    69666598    rs2273773    T    C    559.59    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=52;Dels=0.0;FS=1.186;HRun=2;HaplotypeScore=2.4471;MQ=59.56;MQ0=0;MQRankSum=0.161;QD=10.76;ReadPosRankSum=-0.009;SNPEFF_AMINO_ACID_CHANGE=L29;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69666547_69666694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000403579    GT:AD:DP:GQ:PL    0/1:28,24:52:99:590,0,852
10    69726765    rs565447    T    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.48;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    69729895    rs10997893    T    C    193.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=21.47;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    0/1:3,6:9:95.91:223,0,96
10    69729932    rs112955290    C    CTAAA    1399.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=63.7964;IndelType=I;MQ=51.77;MQ0=0;QD=77.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    1/1:2,16:18:54.19:1441,54,0
10    69750213    rs71468901    G    GA    73.85    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=50.058;IndelType=I;MQ=57.34;MQ0=0;MQRankSum=0.198;QD=5.27;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    0/1:7,6:14:5.03:112,0,5
10    69750788    rs75320455    GA    G    670.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=11;HaplotypeScore=88.4239;IndelType=D;MQ=60.95;MQ0=0;QD=19.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    1/1:5,29:34:86.88:713,87,0
10    69751813    rs2029474    G    A    123.94    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.71;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    0/1:2,5:7:16.50:154,0,17
10    69751863    .    A    G    157.67    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.718;QD=12.13;ReadPosRankSum=1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    0/1:6,7:13:99:188,0,205
10    69773841    rs866255    G    A    2036.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.629;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.233;QD=30.4;ReadPosRankSum=0.595;SNPEFF_AMINO_ACID_CHANGE=S227;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69773783_69773943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2070,120,0
10    69785435    rs72055673    T    TA    1009.95    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.886;DB;DP=69;FS=0.0;HRun=7;HaplotypeScore=161.7924;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=14.64;ReadPosRankSum=1.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    0/1:35,34:69:99:1049,0,598
10    69793644    rs3740055    C    T    261.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=21.81;ReadPosRankSum=1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513996    GT:AD:DP:GQ:PL    0/1:4,8:12:99:292,0,121
10    69799091    .    AG    A    121.69    PASS    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DP=52;FS=2.746;HRun=1;HaplotypeScore=441.3944;IndelType=D;MQ=50.39;MQ0=0;MQRankSum=-2.416;QD=2.34;ReadPosRankSum=1.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277817    GT:AD:DP:GQ:PL    0/1:44,8:52:99:161,0,557
10    69881103    rs10509295    A    T    171.05    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=15.55;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:5,6:11:99:201,0,170
10    69902549    rs3814180    T    C    32.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=4.06;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:5,3:8:62.45:62,0,174
10    69909802    rs10997948    G    A    960.25    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=-0.646;QD=13.92;ReadPosRankSum=-0.796;SNPEFF_AMINO_ACID_CHANGE=Q142;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69909797_69909868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:34,35:69:99:990,0,975
10    69909899    rs7096613    G    A    471.77    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.697;DB;DP=31;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=15.22;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:12,19:31:99:502,0,421
10    69921335    rs10823142    T    A    30.98    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=4.43;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:5,2:7:60.97:61,0,142
10    69921733    rs2255136    T    A    83.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.727;QD=20.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:115,9,0
10    69925123    rs10823146    C    T    94.54    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-0.825;QD=8.59;ReadPosRankSum=-1.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373675    GT:AD:DP:GQ:PL    0/1:6,5:11:99:125,0,199
10    69925176    rs10823147    T    C    231.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.722;QD=12.85;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373675    GT:AD:DP:GQ:PL    0/1:9,9:18:99:261,0,271
10    69926097    rs2673794    T    C    956.28    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.671;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;MQRankSum=0.656;QD=15.42;ReadPosRankSum=-0.068;SNPEFF_AMINO_ACID_CHANGE=S274;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69926051_69926423;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:26,36:62:99:986,0,656
10    69926334    rs10823148    C    G    758.36    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.389;DB;DP=59;Dels=0.0;FS=3.582;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.038;QD=12.85;ReadPosRankSum=0.16;SNPEFF_AMINO_ACID_CHANGE=F353L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69926051_69926423;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:33,26:59:99:788,0,983
10    69926593    rs10997967    C    T    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373675    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    69933921    rs10997975    G    A    989.74    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.125;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=59.08;MQ0=0;MQRankSum=0.256;QD=15.0;ReadPosRankSum=-0.427;SNPEFF_AMINO_ACID_CHANGE=S416N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69933823_69934413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:32,34:66:99:1020,0,931
10    69933969    rs7916821    G    A    840.45    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.624;DB;DP=71;Dels=0.0;FS=0.929;HRun=1;HaplotypeScore=1.8245;MQ=58.95;MQ0=0;MQRankSum=0.019;QD=11.84;ReadPosRankSum=-2.18;SNPEFF_AMINO_ACID_CHANGE=S432N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69933823_69934413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:39,30:71:99:870,0,1279
10    69934258    rs3814182    C    G    914.60    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.118;DB;DP=69;Dels=0.0;FS=8.39;HRun=2;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.414;QD=13.26;ReadPosRankSum=0.414;SNPEFF_AMINO_ACID_CHANGE=S528R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69933823_69934413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:34,35:69:99:945,0,1021
10    69934467    rs3814183    A    G    672.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:705,51,0
10    69934535    rs7917519    G    A    130.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
10    69935059    rs7097776    A    G    863.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.1291;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,29:29:75.20:897,75,0
10    69935235    rs6480306    T    C    1108.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1141,84,0
10    69948844    rs10733838    T    C    932.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_AMINO_ACID_CHANGE=V687;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69948662_69948883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,28:28:72.21:965,72,0
10    69954290    rs7081213    G    A    180.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=1.568;QD=18.07;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:4,6:10:65.44:211,0,65
10    69955140    rs7069569    T    A    201.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.729;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9999;MQ=59.03;MQ0=0;MQRankSum=1.61;QD=8.39;ReadPosRankSum=-0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:15,9:24:99:231,0,504
10    69956999    rs34524918    C    CA    125.14    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=17;FS=0.0;HRun=12;HaplotypeScore=79.5676;IndelType=I;MQ=58.55;MQ0=0;MQRankSum=0.555;QD=7.36;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:9,8:17:92.41:164,0,92
10    69957340    rs7095603    G    A    254.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.618;QD=14.15;ReadPosRankSum=0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:9,9:18:99:285,0,318
10    69957350    rs7095607    G    A    203.09    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=15.62;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:6,7:13:99:233,0,213
10    69957375    rs7095492    C    T    144.64    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=20.66;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:2,5:7:58.94:175,0,59
10    69958975    rs7079385    G    T    121.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
10    69959097    rs7079549    G    T    917.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:951,72,0
10    69959242    rs7079481    C    A    586.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.33;MQ0=0;MQRankSum=-0.411;QD=13.33;ReadPosRankSum=0.458;SNPEFF_AMINO_ACID_CHANGE=P1135T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_69959125_69959332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358913    GT:AD:DP:GQ:PL    0/1:22,22:44:99:617,0,692
10    69959345    rs11279655    GCTGGGA    G    649.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.94;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=151.7999;IndelType=D;MQ=49.35;MQ0=0;MQRankSum=-3.283;QD=29.53;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:11,11:22:99:689,0,1144
10    69959397    rs7079974    G    A    135.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.07;MQ0=0;MQRankSum=-2.993;QD=8.48;ReadPosRankSum=-0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:8,8:16:99:166,0,286
10    69959460    rs12358413    T    C    123.38    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=54.65;MQ0=0;MQRankSum=2.219;QD=13.71;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:4,5:9:99:153,0,123
10    69961405    rs2490936    A    G    76.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
10    69961408    rs2490937    C    T    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
10    69961470    rs7913133    A    G    83.39    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=16.68;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:1,4:5:26.20:113,0,26
10    69961501    rs7913146    A    G    304.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:338,30,0
10    69961864    rs56006628    T    G    49.17    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.072;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=0.505;QD=3.07;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    0/1:12,4:16:79.16:79,0,412
10    69966392    rs3814185    T    G    1717.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354393    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1750,132,0
10    70045201    rs7909365    C    A    2245.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277795    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2278,184,0
10    70045264    rs3816299    A    C    1157.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=37.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277795    GT:AD:DP:GQ:PL    1/1:0,31:31:90.29:1191,90,0
10    70051810    rs80227066    A    G    1667.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.69;MQ0=0;QD=27.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478192    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1700,138,0
10    70051928    rs10823171    A    G    764.56    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=59;Dels=0.0;FS=5.47;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.28;QD=12.96;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=D117;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70051886_70051995;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBLD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309049    GT:AD:DP:GQ:PL    0/1:31,28:59:99:795,0,909
10    70056600    rs59822399    C    T    978.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.52;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277795    GT:AD:DP:GQ:PL    1/1:0,31:31:78.22:1011,78,0
10    70056619    rs72401911    T    TAA    431.39    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=42;FS=1.565;HRun=12;HaplotypeScore=292.8458;IndelType=I;MQ=56.37;MQ0=0;MQRankSum=0.416;QD=10.27;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277795    GT:AD:DP:GQ:PL    0/1:25,14:42:99:470,0,410
10    70066553    rs12359690    G    A    420.86    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=1.417;DB;DP=43;Dels=0.0;FS=2.731;HRun=3;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.079;QD=9.79;ReadPosRankSum=0.682;SNPEFF_AMINO_ACID_CHANGE=R17C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70066518_70066636;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBLD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000277795    GT:AD:DP:GQ:PL    0/1:27,16:43:99:451,0,702
10    70097502    rs71470514    T    TTTTTG    947.10    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.726;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=111.6162;IndelType=I;MQ=59.55;MQ0=0;MQRankSum=0.517;QD=35.08;ReadPosRankSum=-0.734;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463210    GT:AD:DP:GQ:PL    0/1:15,11:27:99:986,0,551
10    70105560    rs1162753    G    A    1310.97    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=85;Dels=0.0;FS=13.12;HRun=1;HaplotypeScore=0.9997;MQ=59.29;MQ0=0;MQRankSum=0.436;QD=15.42;ReadPosRankSum=1.035;SNPEFF_AMINO_ACID_CHANGE=L186;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70104902_70105668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265865    GT:AD:DP:GQ:PL    0/1:40,45:85:99:1341,0,1352
10    70123243    rs10823183    G    A    64.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.988;QD=10.77;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265865    GT:AD:DP:GQ:PL    0/1:3,3:6:77.97:95,0,78
10    70139112    .    T    G    207.58    MQFilter40    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.9648;MQ=37.32;MQ0=0;MQRankSum=-1.738;QD=13.84;ReadPosRankSum=1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472394    GT:AD:DP:GQ:PL    0/1:2,13:15:7.75:237,0,8
10    70141328    rs10823186    G    A    95.72    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=10.64;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388768    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,177
10    70143371    rs10998103    T    C    151.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=16.79;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388768    GT:AD:DP:GQ:PL    0/1:4,5:9:99:181,0,136
10    70143774    rs7899885    C    T    787.49    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=64;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.8321;MQ=59.64;MQ0=0;MQRankSum=0.989;QD=12.3;ReadPosRankSum=-1.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388768    GT:AD:DP:GQ:PL    0/1:36,28:64:99:817,0,1093
10    70153014    rs11432212    C    CA    269.35    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.599;DB;DP=18;FS=0.0;HRun=7;HaplotypeScore=36.3525;IndelType=I;MQ=60.6;MQ0=0;MQRankSum=0.755;QD=14.96;ReadPosRankSum=0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342616    GT:AD:DP:GQ:PL    0/1:8,10:18:99:308,0,178
10    70166913    rs59831114    T    G    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.0;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_70166511_70166946;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RUFY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388768    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
10    70179713    rs7912227    C    G    567.70    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=1.32;QD=13.85;ReadPosRankSum=-0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358410    GT:AD:DP:GQ:PL    0/1:22,19:41:99:598,0,762
10    70182680    rs10998153    C    T    530.60    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.893;DB;DP=49;Dels=0.0;FS=4.496;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=10.83;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358410    GT:AD:DP:GQ:PL    0/1:26,23:49:99:561,0,835
10    70197115    rs12775711    G    A    139.43    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=12.68;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358410    GT:AD:DP:GQ:PL    0/1:6,5:11:99:169,0,220
10    70204987    rs7902170    T    C    124.69    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9158;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=15.59;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358410    GT:AD:DP:GQ:PL    0/1:2,5:8:59.75:155,0,60
10    70205039    rs7916974    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358410    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
10    70206033    rs34922453    TA    T    474.77    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=4.459;DB;DP=51;FS=1.336;HRun=10;HaplotypeScore=133.2652;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=1.128;QD=9.31;ReadPosRankSum=1.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358410    GT:AD:DP:GQ:PL    0/1:25,25:51:99:514,0,579
10    70225504    rs3758626    G    T    1149.18    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.869;DB;DP=88;Dels=0.0;FS=0.836;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.108;QD=13.06;ReadPosRankSum=-0.641;SNPEFF_AMINO_ACID_CHANGE=A169;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70225424_70225569;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358410    GT:AD:DP:GQ:PL    0/1:45,43:88:99:1179,0,1453
10    70228249    rs10998206    T    C    40.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358410    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:71,0,66
10    70231701    rs1535539    A    G    324.85    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.47;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.751;MQ=60.0;MQ0=0;MQRankSum=1.391;QD=7.38;ReadPosRankSum=-0.079;SNPEFF_AMINO_ACID_CHANGE=F60S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70231548_70231879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399180    GT:AD:DP:GQ:PL    0/1:29,15:44:99:355,0,785
10    70246874    rs10998222    A    G    1802.81    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=139;Dels=0.0;FS=0.664;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=1.026;QD=12.97;ReadPosRankSum=-0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265870    GT:AD:DP:GQ:PL    0/1:64,75:139:99:1833,0,2038
10    70247138    rs35699703    A    G    87.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=12.51;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265870    GT:AD:DP:GQ:PL    0/1:3,4:7:99:118,0,100
10    70252743    rs34275431    ATAT    A    263.93    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=47.222;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=-0.895;QD=26.39;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474927    GT:AD:DP:GQ:PL    0/1:3,7:10:99:303,0,167
10    70252822    rs34397387    GA    G    183.66    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=38;FS=0.0;HRun=14;HaplotypeScore=208.521;IndelType=D;MQ=52.37;MQ0=0;MQRankSum=0.419;QD=4.83;ReadPosRankSum=0.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474927    GT:AD:DP:GQ:PL    0/1:22,15:38:99:223,0,261
10    70253085    rs3758627    G    T    251.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.153;DB;DP=16;Dels=0.0;FS=1.822;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=15.72;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265870    GT:AD:DP:GQ:PL    0/1:8,8:16:99:281,0,261
10    70253113    rs35771588    A    G    386.49    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=19;Dels=0.0;FS=2.772;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.155;QD=20.34;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265870    GT:AD:DP:GQ:PL    0/1:7,12:19:99:416,0,194
10    70263579    rs10823215    C    T    462.70    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=4.32;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.601;QD=15.96;ReadPosRankSum=0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491102    GT:AD:DP:GQ:PL    0/1:13,16:29:99:493,0,359
10    70266523    rs2275715    C    T    222.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=14.84;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265870    GT:AD:DP:GQ:PL    0/1:6,9:15:99:253,0,179
10    70266546    rs2275716    G    T    109.31    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=9.11;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265870    GT:AD:DP:GQ:PL    0/1:7,5:12:99:139,0,223
10    70276634    .    C    T    190.48    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DP=11;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=17.32;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265870    GT:AD:DP:GQ:PL    0/1:5,6:11:99:220,0,132
10    70276728    rs2664412    G    A    94.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265870    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
10    70332066    rs3814177    C    T    425.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.126;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6099;MQ=58.89;MQ0=0;MQRankSum=1.231;QD=20.27;ReadPosRankSum=1.007;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_70331974_70334009;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373644    GT:AD:DP:GQ:PL    0/1:7,14:21:99:456,0,223
10    70332580    rs10823229    A    G    816.35    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.349;DB;DP=55;Dels=0.0;FS=1.017;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-1.436;QD=14.84;ReadPosRankSum=0.605;SNPEFF_AMINO_ACID_CHANGE=D162G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70331974_70334009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373644    GT:AD:DP:GQ:PL    0/1:27,28:55:99:846,0,731
10    70392105    rs10823241    G    T    302.11    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.94;MQ0=0;MQRankSum=-0.302;QD=7.75;ReadPosRankSum=0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373644    GT:AD:DP:GQ:PL    0/1:24,15:39:99:332,0,697
10    70392137    rs11497985    A    G    462.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.291;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.39;MQ0=0;MQRankSum=0.163;QD=7.12;ReadPosRankSum=0.616;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373644    GT:AD:DP:GQ:PL    0/1:39,26:65:99:493,0,1187
10    70392319    rs10733844    G    A    2291.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.01;MQ0=2;QD=28.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373644    GT:AD:DP:GQ:PL    1/1:1,79:80:99:2324,190,0
10    70392375    rs1747    G    A    847.04    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=69;Dels=0.0;FS=3.511;HRun=2;HaplotypeScore=1.445;MQ=51.01;MQ0=3;MQRankSum=-3.13;QD=12.28;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373644    GT:AD:DP:GQ:PL    0/1:32,36:69:99:877,0,1005
10    70405855    rs3998860    A    G    1079.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=I1123M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70404455_70406762;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373644    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1113,81,0
10    70442868    rs34580281    GA    G    334.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=8;HaplotypeScore=60.1989;IndelType=D;MQ=60.0;MQ0=0;QD=20.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373644    GT:AD:DP:GQ:PL    1/1:2,14:16:39.06:377,39,0
10    70496773    rs79020072    C    A    208.81    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.744;DB;DP=42;Dels=0.0;FS=18.266;HRun=2;HaplotypeScore=0.5784;MQ=48.5;MQ0=0;MQRankSum=-2.345;QD=4.97;ReadPosRankSum=3.51;SNPEFF_AMINO_ACID_CHANGE=Q72K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70496633_70496805;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265872    GT:AD:DP:GQ:PL    0/1:16,26:42:99:239,0,356
10    70497482    rs1162961    A    G    205.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494903    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:239,21,0
10    70497799    rs1149679    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494903    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
10    70502288    rs1300253    G    A    2469.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7234;MQ=59.68;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=T134;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70502133_70502326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543225    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2502,181,0
10    70502426    rs1300252    T    C    389.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536391    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:422,36,0
10    70520636    rs3998847    CAAA    C    184.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=14;HaplotypeScore=33.8982;IndelType=D;MQ=53.03;MQ0=0;QD=26.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483264    GT:AD:DP:GQ:PL    1/1:0,5:7:21:227,21,0
10    70521041    rs1694493    A    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483264    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
10    70525591    rs1149688    G    A    493.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265872    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:526,39,0
10    70531217    rs10823258    C    T    827.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536012    GT:AD:DP:GQ:PL    1/1:0,24:25:63.21:860,63,0
10    70641860    rs1341667    T    C    1988.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6646;MQ=60.0;MQ0=0;MQRankSum=-0.147;QD=33.15;ReadPosRankSum=1.497;SNPEFF_AMINO_ACID_CHANGE=Y153H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70641714_70641866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298596    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2022,125,0
10    70652197    rs10740310    C    T    208.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298596    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
10    70652559    rs41278534    A    C    151.27    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.61;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399169    GT:AD:DP:GQ:PL    0/1:2,5:7:61.92:181,0,62
10    70670696    rs7918860    A    G    63.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=7.95;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373585    GT:AD:DP:GQ:PL    0/1:5,3:8:93.58:94,0,186
10    70673430    rs5030891    G    A    215.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471475    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
10    70695696    rs5030892    A    T    322.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460470    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
10    70696009    rs7084726    T    C    141.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460470    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:174,15,0
10    70696713    rs5030895    C    T    1989.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=Y539;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70696692_70696851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373585    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2022,147,0
10    70696908    rs1539166    G    T    623.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460470    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:656,48,0
10    70700944    rs5030900    A    G    900.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.07;SNPEFF_AMINO_ACID_CHANGE=G628;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70700816_70700950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373585    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:934,75,0
10    70716106    rs5030896    A    G    447.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354185    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:481,36,0
10    70722939    rs5030897    T    C    89.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354185    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    70734599    rs5030902    A    T    126.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354185    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:160,15,0
10    70742192    rs2251911    T    G    37.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354185    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
10    70748784    rs2255607    G    A    1144.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=34.68;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=G66S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70748487_70749014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1279;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361983    GT:AD:DP:GQ:PL    1/1:1,32:33:53.99:1177,54,0
10    70775959    rs35893997    C    T    838.06    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=52;Dels=0.0;FS=1.298;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.121;QD=15.81;ReadPosRankSum=1.95;SNPEFF_AMINO_ACID_CHANGE=A551;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70775297_70776738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1279;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361983    GT:AD:DP:GQ:PL    0/1:27,25:52:99:868,0,799
10    70856852    rs2805910    G    A    454.69    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.552;QD=11.37;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=R31Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70856840_70856987;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRGN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242465    GT:AD:DP:GQ:PL    0/1:23,17:40:99:485,0,611
10    70864065    rs12437    T    C    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462445    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,71
10    70940191    rs2292192    C    T    950.35    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.812;DB;DP=63;Dels=0.0;FS=1.035;HRun=1;HaplotypeScore=2.482;MQ=59.27;MQ0=0;MQRankSum=-0.773;QD=15.08;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=A48;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70939988_70940318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPV3L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359655    GT:AD:DP:GQ:PL    0/1:30,33:63:99:980,0,848
10    70946101    rs71035072    G    GA    154.29    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=14;FS=0.0;HRun=19;HaplotypeScore=130.7156;IndelType=I;MQ=53.27;MQ0=0;MQRankSum=-0.118;QD=11.02;ReadPosRankSum=1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPV3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359655    GT:AD:DP:GQ:PL    0/1:9,5:14:20.08:193,0,20
10    70962381    rs2279928    C    G    282.88    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=0.139;QD=11.32;ReadPosRankSum=-0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPV3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422378    GT:AD:DP:GQ:PL    0/1:15,10:25:99:313,0,528
10    70987319    rs10762266    G    T    32.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
10    70992413    rs874557    G    A    909.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:942,69,0
10    70992664    rs874556    C    T    2869.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.72;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=T124I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_70992520_70992668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2903,223,0
10    70992912    rs5030970    A    T    1673.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.374;DB;DP=53;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.9665;MQ=59.56;MQ0=0;MQRankSum=-0.849;QD=31.57;ReadPosRankSum=0.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:1,51:53:91.18:1706,91,0
10    70992949    rs5030971    T    A    1502.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1535,114,0
10    70992970    rs5030972    G    A    1242.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1276,96,0
10    70998738    rs4145930    G    A    176.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
10    71000540    rs3740598    G    A    87.34    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.772;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=5.46;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    0/1:7,9:16:99:117,0,250
10    71000541    rs3740599    G    T    106.02    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.15;QD=6.63;ReadPosRankSum=0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    0/1:7,9:16:99:136,0,253
10    71005580    rs12359891    A    G    71.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
10    71009907    rs3740600    G    A    887.42    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.16;MQ0=0;MQRankSum=-0.38;QD=16.13;ReadPosRankSum=-0.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488706    GT:AD:DP:GQ:PL    0/1:25,30:55:99:917,0,807
10    71010026    rs4745978    T    C    6265.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488706    GT:AD:DP:GQ:PL    1/1:0,200:200:99:6265,481,0
10    71016947    rs2279930    C    G    174.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.002;QD=11.66;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    0/1:9,6:15:99:205,0,326
10    71018660    rs1111335    T    C    691.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=28.82;SNPEFF_AMINO_ACID_CHANGE=W721R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71018532_71018715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:725,60,0
10    71026510    rs906219    C    A    658.48    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=1.343;DB;DP=51;Dels=0.0;FS=1.182;HRun=2;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=0.019;QD=12.91;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=N917K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71026366_71027315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354624    GT:AD:DP:GQ:PL    0/1:23,28:51:99:688,0,704
10    71027029    rs4746832    A    G    275.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395087    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:308,24,0
10    71027231    rs2611    G    C    725.94    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.245;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.6;MQ0=0;MQRankSum=0.011;QD=15.45;ReadPosRankSum=-0.394;SNPEFF_AMINO_ACID_CHANGE=V716L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71027195_71027296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395087    GT:AD:DP:GQ:PL    0/1:24,23:47:99:756,0,810
10    71055232    rs2894081    T    C    85.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360289    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
10    71055459    rs4746837    T    C    574.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360289    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:608,51,0
10    71060610    rs906220    A    G    396.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=36.02;SNPEFF_AMINO_ACID_CHANGE=H7R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71060525_71060617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360289    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:429,33,0
10    71060634    rs906221    G    A    364.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=36.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479594    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:397,30,0
10    71060696    rs906222    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479594    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    71060707    rs906223    T    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479594    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    71103597    rs1133189    C    G    1649.60    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.248;DB;DP=106;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=2.647;QD=15.56;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=L14;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71103583_71103745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360289    GT:AD:DP:GQ:PL    0/1:51,55:106:99:1680,0,1428
10    71124843    rs2305199    C    T    130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421088    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
10    71128545    rs12359036    A    G    75.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.78;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421088    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:105,0,29
10    71129194    rs41279656    C    T    785.47    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=55;Dels=0.0;FS=1.034;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.025;QD=14.28;ReadPosRankSum=0.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421088    GT:AD:DP:GQ:PL    0/1:26,29:55:99:815,0,803
10    71139486    .    TCATCCCATAC    T    580.16    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DP=9;FS=0.0;HRun=0;HaplotypeScore=88.989;IndelType=D;MQ=43.65;MQ0=0;MQRankSum=-1.179;QD=64.46;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493591    GT:AD:DP:GQ:PL    0/1:2,7:9:99:619,0,278
10    71142420    rs748235    G    A    1378.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=K469;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71142243_71142547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360289    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1411,108,0
10    71144702    rs749105    G    A    2455.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=38.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298649    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2489,187,0
10    71144813    rs749107    A    G    216.67    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.984;QD=14.44;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298649    GT:AD:DP:GQ:PL    0/1:8,7:15:99:247,0,286
10    71144869    rs749108    C    T    155.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298649    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:188,15,0
10    71152091    rs2278745    T    C    121.09    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.577;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=57.77;MQ0=0;MQRankSum=-0.099;QD=6.37;ReadPosRankSum=-0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298649    GT:AD:DP:GQ:PL    0/1:14,5:19:99:151,0,403
10    71168685    rs55953810    A    T    125.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.05;SNPEFF_AMINO_ACID_CHANGE=M245K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71168678_71168831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TACR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373306    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
10    71264325    rs1652804    G    A    299.53    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=1.367;MQ=58.78;MQ0=0;MQRankSum=0.694;QD=15.76;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373290    GT:AD:DP:GQ:PL    0/1:9,10:19:99:330,0,246
10    71267407    rs71763644    GTT    G    481.04    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.774;DB;DP=91;FS=0.0;HRun=22;HaplotypeScore=844.7026;IndelType=D;MQ=53.44;MQ0=0;MQRankSum=2.791;QD=5.29;ReadPosRankSum=2.319;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459981    GT:AD:DP:GQ:PL    0/1:53,30:91:10.26:520,0,10
10    71332204    rs4536103    A    G    142.45    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.532;QD=12.95;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=F199S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71331454_71332800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEUROG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242462    GT:AD:DP:GQ:PL    0/1:5,6:11:99:172,0,152
10    71390392    rs1947741    C    T    847.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373279    GT:AD:DP:GQ:PL    1/1:0,28:28:66.19:881,66,0
10    71391707    rs2262274    C    T    228.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=48.61;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373279    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:261,21,0
10    71392495    rs2616089    T    A    786.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373279    GT:AD:DP:GQ:PL    1/1:0,25:25:60.20:819,60,0
10    71392501    rs2616088    G    C    850.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373279    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:883,66,0
10    71392557    rs12020    C    T    786.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;QD=28.09;SNPEFF_AMINO_ACID_CHANGE=N36;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71392546_71393352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373279    GT:AD:DP:GQ:PL    1/1:0,26:28:66.15:819,66,0
10    71392692    rs1052152    T    C    1137.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=36.71;SNPEFF_AMINO_ACID_CHANGE=L81;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71392546_71393352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373279    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1171,87,0
10    71393025    rs1132075    A    G    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421716    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
10    71562437    rs10998973    G    A    1262.51    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DB;DP=109;Dels=0.0;FS=4.898;HRun=0;HaplotypeScore=1.8991;MQ=59.79;MQ0=0;MQRankSum=-0.097;QD=11.58;ReadPosRankSum=-0.191;SNPEFF_AMINO_ACID_CHANGE=T86;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71561688_71562473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:61,48:109:99:1293,0,1639
10    71619754    rs4468240    T    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:2,2:4:70.42:72,0,70
10    71635074    rs2683558    G    C    106.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
10    71647056    rs117142832    C    T    62.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=6.91;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:6,3:9:92.19:92,0,217
10    71647196    rs113746607    G    GT    413.84    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=55;FS=0.0;HRun=12;HaplotypeScore=215.7283;IndelType=I;MQ=58.08;MQ0=0;MQRankSum=1.108;QD=7.52;ReadPosRankSum=-1.497;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:36,19:55:99:453,0,375
10    71647298    rs10999011    G    A    445.31    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.333;DB;DP=41;Dels=0.0;FS=1.342;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.704;QD=10.86;ReadPosRankSum=0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:24,17:41:99:475,0,748
10    71648002    rs41277956    C    T    516.16    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.894;DB;DP=39;Dels=0.0;FS=12.746;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=0.684;QD=13.23;ReadPosRankSum=0.621;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:21,18:39:99:546,0,497
10    71648316    rs7100913    C    T    43.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:73,0,22
10    71649309    rs2683572    A    G    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
10    71655443    rs1227744    G    A    776.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.04;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:810,63,0
10    71657272    rs1227746    A    G    2130.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=Q204;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71657231_71657287;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398964    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2164,163,0
10    71657489    rs10762322    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    71658512    rs1227747    G    A    2301.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=T201;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71658453_71658518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398969    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2335,172,0
10    71665421    rs10999022    T    C    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.94;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:2,3:5:66.19:110,0,66
10    71665676    rs2683575    G    C    123.70    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.46;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:3,5:8:99:154,0,103
10    71678058    rs2274181    C    G    546.25    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.542;DB;DP=43;Dels=0.0;FS=4.773;HRun=1;HaplotypeScore=0.6651;MQ=58.92;MQ0=0;MQRankSum=-1.151;QD=12.7;ReadPosRankSum=-1.707;SNPEFF_AMINO_ACID_CHANGE=A281;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71678041_71678073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398969    GT:AD:DP:GQ:PL    0/1:18,25:43:99:576,0,462
10    71681530    rs2274180    C    A    38.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.72;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:2,3:5:68.61:69,0,73
10    71681766    rs4237324    A    G    129.12    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8188;MQ=58.63;MQ0=0;MQRankSum=1.658;QD=7.6;ReadPosRankSum=1.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:11,6:17:99:159,0,335
10    71685532    rs1227778    G    C    178.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=12;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.378;QD=14.89;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:6,6:12:99:209,0,155
10    71689966    rs75113285    TG    T    397.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=9;HaplotypeScore=82.528;IndelType=D;MQ=60.0;MQ0=0;QD=20.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    1/1:3,16:19:48.02:439,48,0
10    71696413    rs12571041    C    T    241.47    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.591;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7653;MQ=59.17;MQ0=0;MQRankSum=0.344;QD=8.62;ReadPosRankSum=1.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:19,9:28:99:271,0,696
10    71697516    rs3750781    G    C    222.64    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=15;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.556;QD=14.84;ReadPosRankSum=1.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:7,8:15:99:253,0,239
10    71703995    rs3750780    A    G    120.91    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.793;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=7.56;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:11,5:16:99:151,0,359
10    71712502    rs3750779    C    T    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    71716509    rs4096395    C    T    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    71716533    rs4096394    G    C    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:1,2:3:16.66:73,0,17
10    71716639    rs4746939    C    T    205.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.678;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.103;QD=12.85;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354547    GT:AD:DP:GQ:PL    0/1:8,8:16:99:236,0,284
10    71849772    rs16927265    A    G    1647.97    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DB;DP=110;Dels=0.0;FS=2.372;HRun=1;HaplotypeScore=0.9665;MQ=59.79;MQ0=0;MQRankSum=-1.106;QD=14.98;ReadPosRankSum=1.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2AFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373255    GT:AD:DP:GQ:PL    0/1:55,54:110:99:1678,0,1664
10    71868763    rs2271698    G    A    3271.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;QD=32.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307864    GT:AD:DP:GQ:PL    1/1:1,99:101:99:3271,250,0
10    71876382    rs2394656    C    T    1694.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_AMINO_ACID_CHANGE=A218;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71876378_71876539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395039    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1728,126,0
10    71880757    rs4746962    A    C    1230.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307864    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1264,102,0
10    71905695    rs10999158    A    G    64.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.48;SNPEFF_AMINO_ACID_CHANGE=G216;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_71905177_71906342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYSND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287078    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
10    71969062    rs9415006    G    A    465.40    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.104;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.052;QD=17.9;ReadPosRankSum=1.816;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373230    GT:AD:DP:GQ:PL    0/1:11,15:26:99:495,0,342
10    71990382    rs4746980    T    C    37.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373230    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
10    72015409    rs10999212    C    A    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.69;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=P197;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72014713_72015583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPFFR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449957    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:65,0,33
10    72025608    rs4746985    G    A    121.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPFFR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277942    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
10    72061079    rs10740336    C    T    680.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446961    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:713,54,0
10    72061420    rs4746997    A    G    348.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.36;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355790    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:381,30,0
10    72061473    rs10740337    T    A    74.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=24.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355790    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
10    72135967    rs10732417    A    G    107.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355790    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
10    72179746    rs1043098    C    T    704.65    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.321;DB;DP=60;Dels=0.0;FS=5.746;HRun=0;HaplotypeScore=2.5783;MQ=60.0;MQ0=0;MQRankSum=0.527;QD=11.74;ReadPosRankSum=-1.718;SNPEFF_AMINO_ACID_CHANGE=H74;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72179670_72179855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4EBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373218    GT:AD:DP:GQ:PL    0/1:33,27:60:99:735,0,1125
10    72181460    rs3793809    G    T    243.18    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.647;DB;DP=28;Dels=0.0;FS=1.744;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.12;QD=8.68;ReadPosRankSum=1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4EBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373218    GT:AD:DP:GQ:PL    0/1:18,10:28:99:273,0,563
10    72195439    rs1904589    T    C    562.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.166;DB;DP=31;Dels=0.0;FS=9.967;HRun=0;HaplotypeScore=1.8218;MQ=60.0;MQ0=0;MQRankSum=0.418;QD=18.14;ReadPosRankSum=-1.342;SNPEFF_AMINO_ACID_CHANGE=H110R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72195042_72195739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NODAL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414871    GT:AD:DP:GQ:PL    0/1:10,20:31:99:592,0,282
10    72195844    rs7909303    T    G    312.69    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=1.944;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.761;QD=24.05;ReadPosRankSum=-0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NODAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287139    GT:AD:DP:GQ:PL    0/1:3,10:13:70.57:343,0,71
10    72207517    rs75761461    AC    A    304.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=31.4461;IndelType=D;MQ=61.19;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NODAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414871    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:346,27,0
10    72207860    rs16927648    C    A    341.45    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.457;QD=22.76;ReadPosRankSum=0.588;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NODAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414871    GT:AD:DP:GQ:PL    0/1:4,11:15:77.60:371,0,78
10    72289244    rs4746052    A    G    84.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
10    72289539    rs12785079    C    T    272.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:305,24,0
10    72290978    rs12773720    G    A    848.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.8;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=59.28;MQ0=0;MQRankSum=1.6;QD=32.64;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:1,25:26:37.44:882,37,0
10    72291304    rs7079876    G    A    405.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:438,33,0
10    72291457    rs34908395    A    G    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
10    72292258    rs10999378    G    C    374.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:408,33,0
10    72293713    rs12764399    C    T    883.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_AMINO_ACID_CHANGE=H302;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72293678_72293829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,28:28:66.22:917,66,0
10    72298631    rs1122918    T    C    1657.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1691,129,0
10    72306822    rs2151962    A    G    175.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
10    72307053    rs67684173    T    C    2703.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2736,217,0
10    72307214    rs7478096    C    A    79.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263563    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
10    72324143    rs7093516    A    G    1825.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=36.5;SNPEFF_AMINO_ACID_CHANGE=Q738;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72324120_72324275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373214    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1858,141,0
10    72326400    rs10999406    G    A    107.24    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.749;QD=9.75;ReadPosRankSum=-0.387;SNPEFF_AMINO_ACID_CHANGE=G804R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72326337_72328205;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1274;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373214    GT:AD:DP:GQ:PL    0/1:6,5:11:99:137,0,129
10    72357713    rs1889490    C    T    55.71    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=4.64;ReadPosRankSum=-0.566;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473106    GT:AD:DP:GQ:PL    0/1:9,3:12:85.70:86,0,251
10    72358577    rs885822    G    A    440.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.103;DB;DP=40;Dels=0.0;FS=2.894;HRun=1;HaplotypeScore=0.734;MQ=59.42;MQ0=0;MQRankSum=-1.025;QD=11.02;ReadPosRankSum=0.476;SNPEFF_AMINO_ACID_CHANGE=H300;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72357105_72358937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318971    GT:AD:DP:GQ:PL    0/1:24,16:40:99:471,0,654
10    72360038    rs10999426    G    A    108.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.43;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318971    GT:AD:DP:GQ:PL    0/1:3,4:7:86.45:138,0,86
10    72360059    rs10999427    C    T    183.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.289;QD=15.27;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318971    GT:AD:DP:GQ:PL    0/1:4,8:12:99:213,0,137
10    72468584    rs117280157    C    G    437.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:470,36,0
10    72492155    rs41277996    G    C    389.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:423,33,0
10    72492212    rs2587478    T    C    73.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
10    72492244    rs10740357    A    C    75.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
10    72493876    rs10740358    T    C    287.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:320,27,0
10    72494778    rs12765664    G    A    120.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
10    72496375    rs1861517    A    G    171.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
10    72500763    rs10823607    T    C    913.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.38;SNPEFF_AMINO_ACID_CHANGE=L590P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72500743_72500918;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,36:36:72.23:947,72,0
10    72504920    rs10999505    C    T    1351.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1385,105,0
10    72505208    rs7907248    A    G    165.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
10    72505243    rs7923892    T    C    38.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
10    72511697    rs10823611    C    T    187.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:221,18,0
10    72513635    rs12774070    C    A    88.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_AMINO_ACID_CHANGE=L937M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72513556_72513763;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
10    72513682    rs2587475    C    T    166.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=C952;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72513556_72513763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
10    72517837    rs6480463    C    T    446.23    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.559;DB;DP=31;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.9999;MQ=58.5;MQ0=0;MQRankSum=0.603;QD=14.39;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=P1019;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72517718_72517847;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    0/1:16,15:31:99:476,0,409
10    72519943    rs4747073    G    C    32.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.69;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    0/1:5,2:7:62.81:63,0,185
10    72520259    rs61573157    C    T    492.76    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=42;Dels=0.0;FS=1.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.092;QD=11.73;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=P1108S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72520116_72522197;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    0/1:18,24:42:99:523,0,520
10    72520330    rs10823615    A    G    606.57    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.032;DB;DP=47;Dels=0.0;FS=1.204;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.91;ReadPosRankSum=0.284;SNPEFF_AMINO_ACID_CHANGE=A1131;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72520116_72522197;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    0/1:22,24:47:99:637,0,672
10    72520567    rs10823616    A    G    332.91    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.491;DB;DP=34;Dels=0.0;FS=1.503;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.151;QD=9.79;ReadPosRankSum=-0.642;SNPEFF_AMINO_ACID_CHANGE=R1210;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72520116_72522197;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373207    GT:AD:DP:GQ:PL    0/1:19,15:34:99:363,0,544
10    72531697    rs2791196    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456372    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    72532106    rs3832689    ATAAATATTTGT    A    1467.38    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=5.157;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=469.4287;IndelType=D;MQ=51.85;MQ0=0;MQRankSum=-4.825;QD=29.35;ReadPosRankSum=0.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456372    GT:AD:DP:GQ:PL    0/1:34,16:50:99:1506,0,4692
10    72532238    rs2253801    T    C    712.81    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.822;DB;DP=63;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=2.6616;MQ=58.89;MQ0=0;MQRankSum=0.813;QD=11.31;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456372    GT:AD:DP:GQ:PL    0/1:35,28:63:99:743,0,1066
10    72532443    rs10823618    G    A    282.52    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.683;QD=10.46;ReadPosRankSum=-0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456372    GT:AD:DP:GQ:PL    0/1:15,12:27:99:313,0,539
10    72533910    rs7077672    C    T    141.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456372    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:174,15,0
10    72535007    rs2254174    C    T    296.04    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.528;QD=13.46;ReadPosRankSum=0.599;SNPEFF_AMINO_ACID_CHANGE=R237Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72534945_72535026;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299290    GT:AD:DP:GQ:PL    0/1:12,10:22:99:326,0,295
10    72535065    rs10823619    A    G    119.79    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=13;Dels=0.0;FS=3.802;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.135;QD=9.21;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545575    GT:AD:DP:GQ:PL    0/1:7,6:13:99:150,0,248
10    72536779    rs2254422    A    C    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545575    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
10    72536849    rs10999537    C    T    154.17    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=14.02;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545575    GT:AD:DP:GQ:PL    0/1:4,7:11:99:184,0,132
10    72538595    rs13376790    G    A    43.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.67;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299290    GT:AD:DP:GQ:PL    0/1:2,3:5:68.76:73,0,69
10    72604263    rs12770335    G    T    307.46    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.549;DB;DP=41;Dels=0.0;FS=1.452;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.192;QD=7.5;ReadPosRankSum=1.077;SNPEFF_AMINO_ACID_CHANGE=V21L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72604230_72604395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373202    GT:AD:DP:GQ:PL    0/1:29,12:41:99:337,0,898
10    72619205    rs827255    C    T    574.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=35.93;SNPEFF_AMINO_ACID_CHANGE=I171;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72619128_72619256;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299297    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:608,45,0
10    72631626    rs865832    C    T    949.61    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.163;DB;DP=81;Dels=0.0;FS=5.843;HRun=1;HaplotypeScore=0.9789;MQ=58.91;MQ0=0;MQRankSum=-0.209;QD=11.72;ReadPosRankSum=0.53;SNPEFF_AMINO_ACID_CHANGE=V314;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_72631594_72631743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373202    GT:AD:DP:GQ:PL    0/1:47,34:81:99:980,0,1359
10    72635143    rs79187993    ATT    A    458.22    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=4.775;DB;DP=38;FS=4.27;HRun=7;HaplotypeScore=121.2026;IndelType=D;MQ=59.59;MQ0=1;MQRankSum=-0.015;QD=11.75;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373202    GT:AD:DP:GQ:PL    0/1:22,17:38:99:497,0,1011
10    72636450    rs923177    T    G    766.31    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.276;DB;DP=54;Dels=0.0;FS=1.245;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.009;QD=14.19;ReadPosRankSum=1.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373202    GT:AD:DP:GQ:PL    0/1:26,28:54:99:796,0,780
10    72643671    rs9712    C    T    145.99    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=13.27;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PCBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493228    GT:AD:DP:GQ:PL    0/1:5,6:11:99:176,0,142
10    72813306    rs10762420    G    A    142.82    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=20.4;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,5:7:62.81:173,0,63
10    72813361    rs10740361    A    G    128.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.04;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:161,12,0
10    72975434    rs12264668    C    T    247.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=27;Dels=0.0;FS=1.909;HRun=0;HaplotypeScore=0.0;MQ=55.58;MQ0=0;MQRankSum=-0.132;QD=9.16;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:16,10:27:99:277,0,515
10    73039860    rs4415677    C    T    450.43    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.156;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=17.32;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:11,15:26:99:480,0,358
10    73044382    rs10823716    T    A    334.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
10    73044413    rs10762434    G    C    150.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4602;MQ=60.0;MQ0=0;MQRankSum=1.331;QD=9.41;ReadPosRankSum=0.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:8,8:16:99:181,0,210
10    73044580    rs12770025    G    A    557.72    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=35;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.508;QD=15.93;ReadPosRankSum=2.272;SNPEFF_AMINO_ACID_CHANGE=A136;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73044477_73044620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:11,24:35:99:588,0,268
10    73044674    rs10999762    G    A    64.65    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.39;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:7,5:12:94.64:95,0,236
10    73046617    rs34957097    A    G    1416.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.027;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9089;MQ=58.96;MQ0=0;MQRankSum=0.506;QD=12.64;ReadPosRankSum=-0.215;SNPEFF_AMINO_ACID_CHANGE=I242V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73046446_73046626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:56,56:112:99:1446,0,1670
10    73046625    rs7069294    C    T    1418.01    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=4.928;DB;DP=98;Dels=0.0;FS=4.12;HRun=0;HaplotypeScore=3.1924;MQ=59.06;MQ0=0;MQRankSum=2.171;QD=14.32;ReadPosRankSum=-0.053;SNPEFF_AMINO_ACID_CHANGE=Y244;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73046446_73046626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:50,48:98:99:1448,0,1404
10    73047182    rs75289661    G    A    113.53    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.22;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:3,4:7:41.07:144,0,41
10    73047555    rs7074042    C    T    233.41    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.454;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.722;QD=13.73;ReadPosRankSum=-0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:9,8:17:99:263,0,231
10    73047593    rs7074280    G    A    431.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:465,36,0
10    73048954    rs10762436    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    73050637    rs3842239    C    CTG    1201.99    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.578;DB;DP=63;FS=2.974;HRun=0;HaplotypeScore=172.5686;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=-1.072;QD=19.08;ReadPosRankSum=1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:36,27:63:99:1241,0,1348
10    73050983    rs3740462    C    T    486.46    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.437;QD=18.71;ReadPosRankSum=-0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:8,18:26:99:516,0,259
10    73051038    rs3740461    G    C    197.94    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=11.64;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:10,7:17:99:228,0,358
10    73051388    rs3740460    T    C    427.12    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=32;Dels=0.0;FS=3.952;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.038;QD=13.35;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=D487;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73051189_73051578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373192    GT:AD:DP:GQ:PL    0/1:15,17:32:99:457,0,524
10    73055831    rs182390245    G    C    149.63    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=18.7;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:3,5:8:99:180,0,102
10    73055849    rs1105174    T    C    101.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.99;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    0/1:2,4:6:42.63:132,0,43
10    73056277    rs72810312    C    T    125.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335350    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
10    73056484    rs12783269    T    C    333.14    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.503;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3002;MQ=57.57;MQ0=0;MQRankSum=0.016;QD=8.54;ReadPosRankSum=-1.833;SNPEFF_AMINO_ACID_CHANGE=H814;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73056335_73056499;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373192    GT:AD:DP:GQ:PL    0/1:25,14:39:99:363,0,719
10    73082563    rs2277257    A    G    1020.95    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.986;DB;DP=116;Dels=0.0;FS=0.74;HRun=1;HaplotypeScore=2.5243;MQ=59.6;MQ0=0;MQRankSum=-0.915;QD=8.8;ReadPosRankSum=-0.395;SNPEFF_AMINO_ACID_CHANGE=R18G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73082513_73082811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    0/1:71,45:116:99:1051,0,2277
10    73103904    rs41281300    C    G    231.03    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=57.66;MQ0=0;MQRankSum=0.152;QD=11.55;ReadPosRankSum=1.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    0/1:11,9:20:99:261,0,336
10    73104056    rs2243540    A    G    1121.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:0,36:36:87.27:1154,87,0
10    73111258    rs780667    G    T    411.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:445,33,0
10    73111408    rs780668    C    T    1944.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.35;MQ0=0;QD=30.38;SNPEFF_AMINO_ACID_CHANGE=S158F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73111319_73111545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1978,150,0
10    73115941    rs2252997    T    C    1281.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.15;MQ0=0;QD=24.18;SNPEFF_AMINO_ACID_CHANGE=T238;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73115838_73116000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1315,129,0
10    73115942    rs2252996    G    A    1276.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=25.03;SNPEFF_AMINO_ACID_CHANGE=V239I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73115838_73116000;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1310,129,0
10    73121591    rs2487066    A    C    295.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=32.87;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:329,24,0
10    73121645    rs2487067    C    A    703.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:0,24:24:60.16:736,60,0
10    73121913    rs2487068    A    G    6269.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.939;DB;DP=220;Dels=0.0;FS=4.565;HRun=0;HaplotypeScore=5.3039;MQ=59.79;MQ0=0;MQRankSum=0.971;QD=28.5;ReadPosRankSum=-1.085;SNPEFF_AMINO_ACID_CHANGE=I326V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73121711_73123142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:1,218:220:99:6269,474,0
10    73121945    rs1084004    T    C    7299.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.128;DB;DP=221;Dels=0.0;FS=3.176;HRun=0;HaplotypeScore=2.6377;MQ=59.79;MQ0=0;MQRankSum=-0.89;QD=33.03;ReadPosRankSum=0.064;SNPEFF_AMINO_ACID_CHANGE=G336;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73121711_73123142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373189    GT:AD:DP:GQ:PL    1/1:1,220:221:99:7299,511,0
10    73206287    rs12770610    C    T    58.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.75;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:3,3:6:85.74:88,0,86
10    73269714    rs2297953    T    C    180.67    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.386;QD=18.07;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:3,7:10:86.80:211,0,87
10    73270906    rs3802720    T    C    824.85    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.771;DB;DP=53;Dels=0.0;FS=7.963;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.875;QD=15.56;ReadPosRankSum=-0.839;SNPEFF_AMINO_ACID_CHANGE=V122;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73270877_73270984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:22,31:53:99:855,0,729
10    73270982    rs3802719    G    A    723.48    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.6;MQ0=0;MQRankSum=0.062;QD=12.47;ReadPosRankSum=-0.047;SNPEFF_AMINO_ACID_CHANGE=G148R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73270877_73270984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:27,31:58:99:753,0,818
10    73270995    rs3802718    A    G    632.90    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.081;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=59.56;MQ0=0;MQRankSum=-0.037;QD=12.17;ReadPosRankSum=0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:27,25:52:99:663,0,823
10    73377314    rs7903772    C    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    73403490    rs10823810    A    G    98.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.01;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:3,4:7:93.85:128,0,94
10    73434888    rs1227049    G    C    686.88    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=65;Dels=0.0;FS=6.85;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.991;QD=10.57;ReadPosRankSum=0.622;SNPEFF_AMINO_ACID_CHANGE=G490A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73434869_73434933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398828    GT:AD:DP:GQ:PL    0/1:38,27:65:99:717,0,1119
10    73434906    rs10999947    G    A    958.60    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=2.006;DB;DP=64;Dels=0.0;FS=3.524;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=14.98;ReadPosRankSum=-0.683;SNPEFF_AMINO_ACID_CHANGE=S13N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73434869_73434933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442677    GT:AD:DP:GQ:PL    0/1:29,35:64:99:989,0,765
10    73439101    rs1227042    T    C    1319.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1352,99,0
10    73447281    rs1227087    G    A    214.58    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=5.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.46;ReadPosRankSum=-1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:3,7:10:86.49:245,0,86
10    73447555    rs1227086    C    T    213.12    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.271;QD=16.39;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:5,8:13:99:243,0,125
10    73453966    .    C    T    728.55    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DP=55;Dels=0.0;FS=5.909;HRun=2;HaplotypeScore=0.8667;MQ=59.58;MQ0=0;MQRankSum=-1.64;QD=13.25;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=R264C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73453904_73454016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442677    GT:AD:DP:GQ:PL    0/1:24,31:55:99:759,0,675
10    73454151    rs1227078    C    T    88.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
10    73454935    rs1227075    C    G    81.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
10    73465033    rs1227069    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    73492079    rs1227065    A    G    1390.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_AMINO_ACID_CHANGE=N1351D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73491744_73492132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398855    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1423,111,0
10    73494159    rs1227062    T    A    565.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398786    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:598,45,0
10    73494229    rs1227061    T    C    413.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398786    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:447,36,0
10    73500861    rs1227053    C    T    173.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
10    73501374    rs1227052    C    T    722.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:755,57,0
10    73501556    rs1227051    G    A    865.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_AMINO_ACID_CHANGE=A1575T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73501451_73501678;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398855    GT:AD:DP:GQ:PL    1/1:0,27:27:72.20:899,72,0
10    73512824    rs57732552    C    G    34.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.9;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263569    GT:AD:DP:GQ:PL    0/1:4,3:7:64.27:64,0,113
10    73514869    rs77746026    A    G    901.39    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.7;DB;DP=54;Dels=0.0;FS=1.732;HRun=0;HaplotypeScore=3.3992;MQ=59.57;MQ0=0;MQRankSum=1.7;QD=16.69;ReadPosRankSum=-0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263569    GT:AD:DP:GQ:PL    0/1:22,32:54:99:931,0,652
10    73515103    rs3747858    G    T    352.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263569    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:385,30,0
10    73520632    rs3747869    A    C    1999.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=59.14;MQ0=0;QD=37.02;SNPEFF_AMINO_ACID_CHANGE=D183E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73520625_73520681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263569    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2032,147,0
10    73521578    rs3747866    G    A    240.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=13.35;ReadPosRankSum=-0.088;SNPEFF_AMINO_ACID_CHANGE=D92;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73521355_73521701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263569    GT:AD:DP:GQ:PL    0/1:9,9:18:99:270,0,277
10    73521830    rs41281326    C    T    50.84    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.294;QD=4.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263569    GT:AD:DP:GQ:PL    0/1:9,3:12:80.84:81,0,323
10    73533177    rs3747862    A    G    342.05    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.173;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.543;QD=14.87;ReadPosRankSum=-0.724;SNPEFF_AMINO_ACID_CHANGE=L7P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73533115_73533255;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394957    GT:AD:DP:GQ:PL    0/1:9,14:23:99:372,0,242
10    73537821    rs10999996    G    T    226.07    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=14;Dels=0.0;FS=5.569;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=16.15;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:6,8:14:99:256,0,195
10    73537978    rs10762480    C    T    702    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.163;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9472;MQ=59.62;MQ0=0;MQRankSum=1.049;QD=11.51;ReadPosRankSum=-0.854;SNPEFF_AMINO_ACID_CHANGE=Y1700;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73537946_73538065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398855    GT:AD:DP:GQ:PL    0/1:37,23:61:99:732,0,840
10    73538109    rs10740390    C    G    365.90    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.83;DB;DP=24;Dels=0.0;FS=7.499;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.713;QD=15.25;ReadPosRankSum=-1.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:11,13:24:99:396,0,303
10    73538164    rs10762481    T    C    132.31    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=11.03;ReadPosRankSum=-1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:5,7:12:99:162,0,175
10    73538896    rs6480555    T    A    115.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.47;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:3,4:7:99:145,0,106
10    73544086    rs3802711    G    A    843.67    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=2.571;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=16.54;ReadPosRankSum=0.592;SNPEFF_AMINO_ACID_CHANGE=R1804Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73544044_73544177;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398855    GT:AD:DP:GQ:PL    0/1:22,29:51:99:874,0,613
10    73544604    rs7068810    T    C    363.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.615;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.359;QD=14.0;ReadPosRankSum=0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:13,13:26:99:394,0,467
10    73545185    rs7089309    G    A    100.87    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=14.41;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:2,5:7:55.07:131,0,55
10    73545236    rs3802709    G    T    70.82    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.85;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,157
10    73550969    rs10466026    G    A    388.96    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.243;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.32;MQ0=0;MQRankSum=1.131;QD=11.44;ReadPosRankSum=-0.496;SNPEFF_AMINO_ACID_CHANGE=E2044K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73550889_73551092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398855    GT:AD:DP:GQ:PL    0/1:18,14:33:99:419,0,491
10    73551258    rs10823847    T    C    103.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
10    73556692    rs1006307    A    C    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
10    73558030    rs7068357    G    A    160.85    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=3.328;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.079;QD=8.04;ReadPosRankSum=-0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:13,7:20:99:191,0,358
10    73558852    rs4747193    A    G    318.75    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.667;DB;DP=57;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.965;MQ=59.6;MQ0=0;MQRankSum=-1.077;QD=5.59;ReadPosRankSum=0.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:37,20:57:99:349,0,1014
10    73558886    rs4747194    G    A    454.60    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.695;DB;DP=56;Dels=0.0;FS=5.786;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.372;QD=8.12;ReadPosRankSum=0.511;SNPEFF_AMINO_ACID_CHANGE=R118Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73558868_73559037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398788    GT:AD:DP:GQ:PL    0/1:38,18:56:99:485,0,1104
10    73558952    rs4747195    C    T    348.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.781;DB;DP=36;Dels=0.0;FS=8.205;HRun=0;HaplotypeScore=1.581;MQ=59.36;MQ0=0;MQRankSum=-0.555;QD=9.67;ReadPosRankSum=0.035;SNPEFF_AMINO_ACID_CHANGE=P140L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73558868_73559037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398788    GT:AD:DP:GQ:PL    0/1:20,16:36:99:378,0,573
10    73562538    rs12773941    C    T    88.48    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.071;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=5.9;ReadPosRankSum=0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:11,4:15:99:118,0,373
10    73562744    rs10823849    G    A    902.54    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=3.206;DB;DP=64;Dels=0.0;FS=7.099;HRun=0;HaplotypeScore=1.7128;MQ=59.71;MQ0=0;MQRankSum=-0.793;QD=14.1;ReadPosRankSum=-0.986;SNPEFF_AMINO_ACID_CHANGE=A2524;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73562655_73562832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398855    GT:AD:DP:GQ:PL    0/1:29,34:64:99:933,0,802
10    73569749    rs11000009    C    T    1171.56    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=4.413;DB;DP=97;Dels=0.0;FS=9.325;HRun=0;HaplotypeScore=0.9332;MQ=59.76;MQ0=0;MQRankSum=1.333;QD=12.08;ReadPosRankSum=-1.038;SNPEFF_AMINO_ACID_CHANGE=P2965;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_73569577_73569833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398855    GT:AD:DP:GQ:PL    0/1:55,42:97:99:1202,0,1452
10    73570215    rs45522532    C    A    715.38    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.899;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.908;QD=14.6;ReadPosRankSum=0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:23,25:49:99:745,0,727
10    73570334    rs11818398    G    A    633.83    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.53;MQ0=0;MQRankSum=0.631;QD=12.94;ReadPosRankSum=-0.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:22,27:49:99:664,0,674
10    73571521    rs11000013    G    A    104.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=10;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=1.38;QD=10.47;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357471    GT:AD:DP:GQ:PL    0/1:5,5:10:57.61:135,0,58
10    73571678    rs41281342    C    T    1349.76    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.026;DB;DP=83;Dels=0.0;FS=1.05;HRun=0;HaplotypeScore=2.5338;MQ=58.26;MQ0=0;MQRankSum=1.398;QD=16.26;ReadPosRankSum=1.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357471    GT:AD:DP:GQ:PL    0/1:35,48:83:99:1380,0,992
10    73576307    rs7869    C    T    144.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=12.02;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:6,6:12:99:174,0,149
10    73578159    rs10762482    A    T    33.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.71;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:3,2:5:63.53:64,0,111
10    73578503    rs885828    G    A    1086.14    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=88;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=0.491;QD=12.34;ReadPosRankSum=1.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:49,38:88:99:1116,0,1619
10    73578672    rs749823    G    A    134.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.307;QD=13.46;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:4,6:10:83.93:165,0,84
10    73578882    rs4747203    T    C    303.29    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.758;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.824;QD=13.79;ReadPosRankSum=-1.615;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:10,12:22:99:333,0,274
10    73579217    rs11000016    C    T    506.01    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.436;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;MQRankSum=-0.968;QD=10.77;ReadPosRankSum=-2.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:24,23:47:99:536,0,635
10    73579405    rs3747860    C    T    597.87    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.482;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.122;QD=17.58;ReadPosRankSum=0.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224721    GT:AD:DP:GQ:PL    0/1:14,20:34:99:628,0,285
10    73581560    rs2070968    A    T    173.54    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=12;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.036;QD=14.46;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357471    GT:AD:DP:GQ:PL    0/1:5,6:12:99:204,0,101
10    73594358    rs3878001    C    T    39.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=7.9;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357471    GT:AD:DP:GQ:PL    0/1:3,2:5:69.04:70,0,69
10    73822243    rs1049245    G    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460053    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    73822343    rs3088251    T    C    102.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=10.26;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460053    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,199
10    73822507    rs1530803    C    T    582.87    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.564;QD=14.95;ReadPosRankSum=0.442;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460053    GT:AD:DP:GQ:PL    0/1:17,22:39:99:613,0,487
10    73823740    rs1613186    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317376    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    73827292    rs1530804    A    G    634.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317376    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:668,51,0
10    73848105    rs34081585    TG    T    96.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=20.864;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.72;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483699    GT:AD:DP:GQ:PL    0/1:2,5:7:19.71:135,0,20
10    73856984    rs3312    A    G    415.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.15;DB;DP=35;Dels=0.0;FS=9.259;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.917;QD=11.88;ReadPosRankSum=0.983;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317126    GT:AD:DP:GQ:PL    0/1:20,15:35:99:446,0,665
10    73862032    rs1668154    C    T    203.67    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=11.98;ReadPosRankSum=0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394915    GT:AD:DP:GQ:PL    0/1:10,7:17:99:234,0,312
10    73970451    rs7069703    G    T    351.57    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.929;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.575;QD=14.06;ReadPosRankSum=-0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533958    GT:AD:DP:GQ:PL    0/1:11,14:25:99:382,0,321
10    74035041    rs1053639    T    A    120.40    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.05;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDIT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471240    GT:AD:DP:GQ:PL    0/1:3,5:8:99:150,0,104
10    74100430    rs76730632    G    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338820    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
10    74100642    rs9416018    G    A    164.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.766;QD=10.96;ReadPosRankSum=0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338820    GT:AD:DP:GQ:PL    0/1:9,6:15:99:194,0,273
10    74182917    rs10823922    T    C    1197.14    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4131;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=13.92;ReadPosRankSum=-0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    0/1:46,40:86:99:1227,0,1344
10    74183251    rs7069357    G    A    121.06    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.53;MQ0=0;MQRankSum=0.139;QD=6.37;ReadPosRankSum=0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    0/1:14,5:19:99:151,0,506
10    74234817    rs915432    T    C    1129.27    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=2.197;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.265;QD=19.47;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    0/1:22,36:58:99:1159,0,528
10    74235771    rs11000322    G    A    292.77    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=20.91;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    0/1:5,9:14:99:323,0,160
10    74235897    rs11000323    A    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    74235910    rs7917451    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    74268031    rs3793927    T    C    567.88    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=2.382;DB;DP=48;Dels=0.0;FS=1.3;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.738;QD=11.83;ReadPosRankSum=0.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    0/1:29,19:48:99:598,0,938
10    74293584    rs10509343    A    T    468.94    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=41;Dels=0.0;FS=3.41;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.274;QD=11.44;ReadPosRankSum=-1.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    0/1:24,17:41:99:499,0,770
10    74293601    rs11818304    T    A    372.54    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.609;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.844;QD=11.29;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361114    GT:AD:DP:GQ:PL    0/1:20,13:33:99:403,0,677
10    74671611    rs3750736    C    T    400.89    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.423;DB;DP=56;Dels=0.0;FS=1.122;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.19;QD=7.16;ReadPosRankSum=-0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334011    GT:AD:DP:GQ:PL    0/1:37,19:56:99:431,0,1120
10    74695287    rs2461917    T    C    2057.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=33.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334011    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2090,159,0
10    74896743    rs7094774    A    T    164.72    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=18.3;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ECD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372979    GT:AD:DP:GQ:PL    0/1:1,8:9:15.92:195,0,16
10    75013891    rs145830698    G    A    135.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=13.55;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440197    GT:AD:DP:GQ:PL    0/1:5,5:10:99:165,0,179
10    75186082    rs147699725    C    T    877.69    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.583;DB;DP=73;Dels=0.0;FS=0.977;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.984;QD=12.02;ReadPosRankSum=-0.236;SNPEFF_AMINO_ACID_CHANGE=D186N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_75185569_75186135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZMYND17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299432    GT:AD:DP:GQ:PL    0/1:38,35:73:99:908,0,1153
10    75451667    .    G    T    145.61    MQFilter40    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.27;MQ0=10;MQRankSum=-0.248;QD=7.66;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374094    GT:AD:DP:GQ:PL    0/1:11,8:19:73.23:176,0,73
10    75473704    rs3870401    G    C    400.48    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.062;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.25;MQ0=4;MQRankSum=0.991;QD=8.34;ReadPosRankSum=-0.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BMS1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441263    GT:AD:DP:GQ:PL    0/1:20,28:48:99:430,0,196
10    75473787    rs3870402    A    C    30.23    MQFilter40;QDFilter2    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.14;MQ0=2;MQRankSum=-1.557;QD=1.89;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BMS1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441263    GT:AD:DP:GQ:PL    0/1:11,5:16:60.22:60,0,382
10    75478824    rs2127365    A    G    77.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.727;QD=19.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-464F9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449532    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:107,0,30
10    75479125    rs6480709    T    C    768.26    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.92;DB;DP=46;Dels=0.0;FS=1.665;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.388;QD=16.7;ReadPosRankSum=0.188;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BMS1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441263    GT:AD:DP:GQ:PL    0/1:20,26:46:99:798,0,529
10    75519322    rs10740418    T    C    148.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=14.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339365    GT:AD:DP:GQ:PL    0/1:4,6:10:93.44:178,0,93
10    75525999    rs3849969    A    G    678.16    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=48;Dels=0.0;FS=3.276;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.424;QD=14.13;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339365    GT:AD:DP:GQ:PL    0/1:25,23:48:99:708,0,885
10    75526756    rs41280410    C    T    685.13    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.259;DB;DP=46;Dels=0.0;FS=2.66;HRun=0;HaplotypeScore=1.8332;MQ=58.99;MQ0=0;MQRankSum=-0.783;QD=14.89;ReadPosRankSum=0.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546025    GT:AD:DP:GQ:PL    0/1:22,24:46:99:715,0,734
10    75532848    rs35029704    GCCAGGACTCCAGGTGTCCAGGACTCCAGGTGT    G    919.97    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=27;FS=2.291;HRun=0;HaplotypeScore=772.5888;IndelType=D;MQ=48.05;MQ0=0;MQRankSum=1.569;QD=34.07;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339365    GT:AD:DP:GQ:PL    0/1:12,12:27:99:959,0,1378
10    75532886    rs5017445    A    C    45.53    HaplotypeScoreFilter13;QDFilter2    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=3.081;DB;DP=30;Dels=0.03;FS=5.528;HRun=1;HaplotypeScore=73.467;MQ=46.04;MQ0=0;MQRankSum=-0.58;QD=1.47;ReadPosRankSum=-0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC24C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339365    GT:AD:DP:GQ:PL    0/1:26,4:30:75.53:76,0,279
10    75542586    rs4745722    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489264    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    75554541    rs7908825    C    G    147.96    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=18.49;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0913;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398706    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,100
10    75558867    rs2271271    G    A    551.28    PASS    AB=0.276;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.073;DB;DP=29;Dels=0.0;FS=3.696;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.61;QD=19.01;ReadPosRankSum=0.561;SNPEFF_AMINO_ACID_CHANGE=L1428;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_75558760_75559248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0913;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398706    GT:AD:DP:GQ:PL    0/1:8,21:29:99:581,0,239
10    75559662    .    C    CTCTA    590.76    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.637;DP=27;FS=0.0;HRun=0;HaplotypeScore=98.3605;IndelType=I;MQ=56.49;MQ0=0;MQRankSum=-0.179;QD=21.88;ReadPosRankSum=2.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0913;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487278    GT:AD:DP:GQ:PL    0/1:19,8:27:99:630,0,715
10    75560545    .    GC    G    108.07    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DP=26;FS=0.0;HRun=10;HaplotypeScore=91.3263;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=1.273;QD=4.16;ReadPosRankSum=-0.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0913;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487278    GT:AD:DP:GQ:PL    0/1:18,8:26:99:147,0,338
10    75562161    rs13013    C    A    363.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.306;DB;DP=21;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.783;QD=17.3;ReadPosRankSum=-0.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0913;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398706    GT:AD:DP:GQ:PL    0/1:7,14:21:99:393,0,229
10    75597289    rs2242255    T    A    1922.51    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.992;DB;DP=130;Dels=0.0;FS=1.648;HRun=2;HaplotypeScore=2.2337;MQ=59.36;MQ0=0;MQRankSum=0.273;QD=14.79;ReadPosRankSum=-0.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305762    GT:AD:DP:GQ:PL    0/1:62,68:130:99:1953,0,1780
10    75601688    rs2254266    T    C    82.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305762    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:113,0,27
10    75607643    rs3214931    C    CT    234.66    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.654;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=89.1307;IndelType=I;MQ=53.52;MQ0=0;MQRankSum=-2.067;QD=15.64;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305762    GT:AD:DP:GQ:PL    0/1:9,6:15:99:274,0,238
10    75607696    rs68026770    CA    C    1857.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=2;HaplotypeScore=142.4328;IndelType=D;MQ=57.42;MQ0=0;QD=37.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305762    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1900,147,0
10    75612881    rs2250140    T    C    274.23    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.75;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.223;QD=8.85;ReadPosRankSum=0.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305762    GT:AD:DP:GQ:PL    0/1:19,12:31:99:304,0,597
10    75620757    rs2664282    T    C    203.86    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.53;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305762    GT:AD:DP:GQ:PL    0/1:4,7:11:99:234,0,137
10    75632760    rs2675671    C    T    1707.86    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=138;Dels=0.0;FS=2.185;HRun=2;HaplotypeScore=3.5226;MQ=59.5;MQ0=0;MQRankSum=0.848;QD=12.38;ReadPosRankSum=0.092;SNPEFF_AMINO_ACID_CHANGE=K49;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_75632747_75632841;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMK2G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305762    GT:AD:DP:GQ:PL    0/1:78,60:138:99:1738,0,2271
10    75671162    rs1916341    G    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLAU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372762    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    75672475    rs2227560    A    G    30.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLAU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496926    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
10    75672607    rs61567551    C    CA    187.99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=12;FS=0.0;HRun=12;HaplotypeScore=63.405;IndelType=I;MQ=54.94;MQ0=0;MQRankSum=-0.107;QD=15.67;ReadPosRankSum=-0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLAU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496926    GT:AD:DP:GQ:PL    0/1:3,8:12:6.58:227,0,7
10    75672961    rs2227562    G    A    308.14    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=21;Dels=0.0;FS=4.036;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.528;QD=14.67;ReadPosRankSum=0.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLAU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481390    GT:AD:DP:GQ:PL    0/1:10,11:21:99:338,0,312
10    75673101    rs2227564    T    C    1215.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.866;QD=32.85;ReadPosRankSum=-1.059;SNPEFF_AMINO_ACID_CHANGE=L105P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_75673048_75673139;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLAU;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372761    GT:AD:DP:GQ:PL    1/1:1,36:37:99:1248,99,0
10    75673731    rs2227566    C    T    266.62    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.218;DB;DP=21;Dels=0.0;FS=2.318;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.373;QD=12.12;ReadPosRankSum=-0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLAU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481390    GT:AD:DP:GQ:PL    0/1:11,10:21:99:297,0,321
10    75673879    rs2227568    C    T    221.48    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.571;DB;DP=21;Dels=0.0;FS=8.822;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.326;QD=10.55;ReadPosRankSum=1.992;SNPEFF_AMINO_ACID_CHANGE=N238;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_75673738_75673886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLAU;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372761    GT:AD:DP:GQ:PL    0/1:13,8:21:99:251,0,355
10    75674740    rs2227571    C    T    145.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=12.09;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLAU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481390    GT:AD:DP:GQ:PL    0/1:7,5:12:99:175,0,194
10    75803109    rs142336119    A    AT    138.46    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=12;FS=0.0;HRun=12;HaplotypeScore=24.9759;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=11.54;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211998    GT:AD:DP:GQ:PL    0/1:5,7:12:16.78:177,0,17
10    75843100    rs1908339    T    A    450.08    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.564;DB;DP=39;Dels=0.0;FS=1.496;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.777;QD=11.54;ReadPosRankSum=0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211998    GT:AD:DP:GQ:PL    0/1:21,18:39:99:480,0,680
10    75853796    rs10824069    C    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211998    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    75863750    rs2270552    C    T    775.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211998    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:809,60,0
10    75865065    rs767809    G    A    1449.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=P468;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_75864809_75865111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436396    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1482,108,0
10    75866929    rs2131957    C    A    1247.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478896    GT:AD:DP:GQ:PL    1/1:0,35:36:96.31:1281,96,0
10    75869065    rs2270551    T    C    38.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472585    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
10    75871735    rs2131956    C    G    1156.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.03;FS=0.0;HRun=2;HaplotypeScore=2.5432;MQ=58.23;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=G610;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_75871667_75871870;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436396    GT:AD:DP:GQ:PL    1/1:0,36:36:93.27:1190,93,0
10    75873892    rs10824072    C    T    744.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211998    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:777,57,0
10    75874192    rs28639484    T    C    206.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=15.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415462    GT:AD:DP:GQ:PL    1/1:0,13:13:21.05:239,21,0
10    75889760    rs35456205    GA    G    765.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=10;HaplotypeScore=95.6427;IndelType=D;MQ=60.32;MQ0=0;QD=22.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355264    GT:AD:DP:GQ:PL    1/1:3,31:34:92.98:807,93,0
10    75893634    rs10824080    G    A    196.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487653    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
10    75896601    rs10762576    A    C    239.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487653    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:272,21,0
10    75936611    rs10824095    C    T    348.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_75936444_75936644;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372734    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:382,30,0
10    76074407    rs144492760    A    G    223.41    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=19;Dels=0.0;FS=6.419;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.115;QD=11.76;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    0/1:8,11:19:99:253,0,281
10    76131244    rs11001018    C    T    173.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
10    76132162    rs1904067    T    C    2634.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.787;MQ=58.22;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    1/1:0,88:89:99:2668,214,0
10    76132238    rs35720770    T    TA    778.91    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.292;DB;DP=47;FS=0.0;HRun=12;HaplotypeScore=232.448;IndelType=I;MQ=57.47;MQ0=0;MQRankSum=0.759;QD=16.57;ReadPosRankSum=0.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    0/1:13,33:47:10.43:818,0,10
10    76154303    rs2306161    T    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    76158177    rs2126763    C    T    863.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:897,66,0
10    76158518    rs2169683    T    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    76429870    rs10740443    T    C    165.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=15;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=11.04;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    0/1:8,7:15:99:196,0,276
10    76467792    rs138626621    C    T    145.49    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.95;MQ0=0;MQRankSum=-1.495;QD=18.19;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286621    GT:AD:DP:GQ:PL    0/1:2,6:8:63.40:175,0,63
10    76719679    rs4746249    C    A    556.62    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.34;MQ0=0;MQRankSum=0.644;QD=15.9;ReadPosRankSum=1.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287239    GT:AD:DP:GQ:PL    0/1:18,17:35:99:587,0,571
10    76729632    rs3213967    C    T    319.30    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.045;DB;DP=28;Dels=0.0;FS=3.023;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=11.4;ReadPosRankSum=-0.812;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287239    GT:AD:DP:GQ:PL    0/1:16,12:28:99:349,0,567
10    76854564    rs3088142    C    T    434.35    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=25;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.868;QD=17.37;ReadPosRankSum=-0.031;SNPEFF_AMINO_ACID_CHANGE=C105Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_76854194_76854636;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000464872    GT:AD:DP:GQ:PL    0/1:9,16:25:99:464,0,226
10    76855421    rs3740316    G    A    1713.68    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=2.995;DB;DP=128;Dels=0.0;FS=10.285;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=13.39;ReadPosRankSum=1.214;SNPEFF_AMINO_ACID_CHANGE=I102;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_76855333_76855553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308475    GT:AD:DP:GQ:PL    0/1:73,55:128:99:1744,0,1848
10    76861680    rs6480771    T    C    1159.87    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.301;DB;DP=109;Dels=0.0;FS=5.333;HRun=1;HaplotypeScore=3.6221;MQ=58.29;MQ0=0;MQRankSum=-0.254;QD=10.64;ReadPosRankSum=0.04;SNPEFF_AMINO_ACID_CHANGE=S111G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_76861625_76861719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000491677    GT:AD:DP:GQ:PL    0/1:53,56:109:99:1190,0,1641
10    76861920    rs10824273    A    T    30.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.09;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473072    GT:AD:DP:GQ:PL    0/1:4,2:6:60.53:61,0,126
10    76928120    rs1995570    C    T    140.09    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=10.78;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372687    GT:AD:DP:GQ:PL    0/1:8,5:13:99:170,0,297
10    76928149    rs1995569    G    C    397.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.589;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9318;MQ=60.0;MQ0=0;MQRankSum=-0.604;QD=18.93;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372687    GT:AD:DP:GQ:PL    0/1:9,12:21:99:428,0,242
10    76971844    rs2804535    C    T    74.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.0;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298468    GT:AD:DP:GQ:PL    0/1:2,3:5:61.95:105,0,62
10    76978705    rs111273803    A    AAGG    386.43    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=31.1184;IndelType=I;MQ=50.44;MQ0=0;MQRankSum=0.278;QD=29.73;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470745    GT:AD:DP:GQ:PL    0/1:4,9:11:99:425,0,159
10    76979218    rs7896741    G    C    227.95    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=1.491;QD=13.41;ReadPosRankSum=-2.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413289    GT:AD:DP:GQ:PL    0/1:9,8:17:99:258,0,322
10    77191441    rs55922628    C    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_77191211_77191512;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354343    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    77542558    rs2133705    C    T    71.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.99;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354343    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,108
10    78648972    rs11001919    G    A    34.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:64,0,68
10    78649399    rs2288840    C    T    402.48    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.763;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.496;QD=12.2;ReadPosRankSum=0.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    0/1:19,14:33:99:432,0,490
10    78673557    rs2395443    T    G    38.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=19.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
10    78673640    rs2395444    G    T    71.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
10    78709203    rs12770084    G    A    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:71,0,34
10    78711558    rs7086746    A    G    125.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
10    78713310    rs3816025    G    C    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
10    78729669    rs2288837    A    G    592.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=28.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475352    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:626,51,0
10    78737595    rs16934131    T    C    31.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.21;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    0/1:4,2:6:61.26:61,0,128
10    78868165    rs35119991    CAAA    C    520.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.041;DB;DP=26;FS=0.0;HRun=15;HaplotypeScore=189.0854;IndelType=D;MQ=52.16;MQ0=0;MQRankSum=0.347;QD=20.03;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    1/1:5,17:26:31.31:563,31,0
10    78943091    rs55976351    G    A    397.49    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.0;QD=18.93;ReadPosRankSum=0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    0/1:8,13:21:99:427,0,226
10    79163867    rs596832    G    C    274.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.817;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.038;QD=13.7;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    0/1:10,10:20:99:304,0,362
10    79396463    rs12217221    C    T    1110.74    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=0.141;DB;DP=85;Dels=0.0;FS=2.054;HRun=1;HaplotypeScore=1.5731;MQ=59.46;MQ0=0;MQRankSum=0.916;QD=13.07;ReadPosRankSum=0.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286627    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1141,0,1353
10    79552092    rs2165046    C    T    322.21    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9576;MQ=59.07;MQ0=0;MQRankSum=1.278;QD=12.89;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459739    GT:AD:DP:GQ:PL    0/1:13,12:25:99:352,0,448
10    79552151    rs1058202    T    C    923.87    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=2.216;DB;DP=53;Dels=0.0;FS=1.365;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-1.552;QD=17.43;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459739    GT:AD:DP:GQ:PL    0/1:23,30:53:99:954,0,688
10    79553673    rs2812425    T    C    377.09    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=31.42;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372388    GT:AD:DP:GQ:PL    0/1:1,11:12:3.20:406,0,3
10    79565655    rs2289311    G    A    497.39    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.155;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.23;MQ0=0;MQRankSum=-0.731;QD=16.58;ReadPosRankSum=0.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484525    GT:AD:DP:GQ:PL    0/1:13,17:30:99:527,0,378
10    79566407    rs10762765    T    C    54.50    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.9;MQ0=0;MQRankSum=-0.555;QD=4.54;ReadPosRankSum=-0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484525    GT:AD:DP:GQ:PL    0/1:9,3:12:84.49:84,0,321
10    79566480    rs58116353    CT    C    89.56    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=2.667;DB;DP=27;FS=8.909;HRun=1;HaplotypeScore=86.2557;IndelType=D;MQ=60.4;MQ0=0;MQRankSum=-0.976;QD=3.32;ReadPosRankSum=-1.561;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484525    GT:AD:DP:GQ:PL    0/1:21,6:27:99:129,0,871
10    79566632    rs1058198    G    A    853.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.408;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=11.09;ReadPosRankSum=-0.099;SNPEFF_AMINO_ACID_CHANGE=D1277;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_79566516_79566686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372388    GT:AD:DP:GQ:PL    0/1:42,35:77:99:884,0,1041
10    79571108    rs2289309    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468332    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    79579047    rs1248635    A    G    265.97    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.209;QD=8.58;ReadPosRankSum=-1.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466198    GT:AD:DP:GQ:PL    0/1:18,13:31:99:296,0,498
10    79579251    rs2289308    G    A    161.10    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.794;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=10.07;ReadPosRankSum=-0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466198    GT:AD:DP:GQ:PL    0/1:9,7:16:99:191,0,240
10    79584178    rs1248629    G    C    456.73    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=1.236;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-3.641;QD=19.86;ReadPosRankSum=0.1;SNPEFF_AMINO_ACID_CHANGE=R331;SNPEFF_CODON_CHANGE=cgC/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_79584142_79584234;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372392    GT:AD:DP:GQ:PL    0/1:7,16:23:99:487,0,221
10    79589904    rs55854323    C    T    552.67    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.531;DB;DP=36;Dels=0.0;FS=2.126;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.016;QD=15.35;ReadPosRankSum=0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372388    GT:AD:DP:GQ:PL    0/1:16,20:36:99:583,0,529
10    79590685    rs10824579    C    T    189.85    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DB;DP=20;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-1.395;QD=9.49;ReadPosRankSum=1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372388    GT:AD:DP:GQ:PL    0/1:13,7:20:99:220,0,294
10    79614189    rs1248692    A    G    258.76    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.288;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=2.621;QD=14.38;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372388    GT:AD:DP:GQ:PL    0/1:8,10:18:99:289,0,239
10    79616278    rs1248694    T    C    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
10    79616605    rs1248696    T    C    133.05    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=17;Dels=0.0;FS=2.246;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.927;QD=7.83;ReadPosRankSum=0.342;SNPEFF_AMINO_ACID_CHANGE=Q140R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_79616488_79616650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372388    GT:AD:DP:GQ:PL    0/1:10,7:17:99:163,0,300
10    79628875    rs1248655    A    G    178.76    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=8;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=22.34;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372388    GT:AD:DP:GQ:PL    0/1:1,7:8:21.94:209,0,22
10    79736964    rs2241547    C    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POLR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540842    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    79737613    rs2241548    A    C    34.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=11.34;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POLR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372371    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:64,0,29
10    79744861    rs79296850    G    A    157.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.639;QD=8.77;ReadPosRankSum=1.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POLR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372371    GT:AD:DP:GQ:PL    0/1:12,6:18:99:188,0,359
10    79745269    rs2559658    A    G    140.73    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POLR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372371    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:171,0,21
10    79795376    rs6496    A    G    757.43    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.934;DB;DP=55;Dels=0.0;FS=2.619;HRun=2;HaplotypeScore=0.0;MQ=50.42;MQ0=0;MQRankSum=1.389;QD=13.77;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=G59;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_79795269_79795478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360830    GT:AD:DP:GQ:PL    0/1:28,27:55:99:787,0,763
10    79797683    .    TG    T    93.64    PASS    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=3.973;DP=41;FS=17.732;HRun=1;HaplotypeScore=288.6795;IndelType=D;MQ=42.23;MQ0=0;MQRankSum=-2.787;QD=2.28;ReadPosRankSum=0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464716    GT:AD:DP:GQ:PL    0/1:33,6:41:99:133,0,344
10    80037596    rs7071910    C    T    31.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.22;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=C10orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415959    GT:AD:DP:GQ:PL    0/1:2,3:5:61.07:61,0,70
10    80037648    rs7090069    T    G    64.50    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.06;ReadPosRankSum=0.956;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=C10orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415959    GT:AD:DP:GQ:PL    0/1:5,3:8:94.49:94,0,142
10    80510586    rs34585678    CT    C    642.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=4;HaplotypeScore=56.4386;IndelType=D;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC074323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411311    GT:AD:DP:GQ:PL    1/1:3,19:22:57.17:684,57,0
10    80961519    rs2802371    T    C    357.91    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.53;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.56;MQ0=0;MQRankSum=-0.644;QD=6.88;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:34,18:52:99:388,0,1180
10    81036871    rs78898816    G    A    309.93    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=27;Dels=0.0;FS=4.222;HRun=0;HaplotypeScore=1.399;MQ=58.27;MQ0=0;MQRankSum=2.0;QD=11.48;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:14,13:27:99:340,0,364
10    81037112    rs79407124    A    G    395.93    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.723;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.129;QD=15.23;ReadPosRankSum=1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:12,14:26:99:426,0,323
10    81049687    rs12263204    C    T    610.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.053;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9436;MQ=58.81;MQ0=0;MQRankSum=-1.556;QD=15.64;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:18,21:39:99:640,0,389
10    81050610    rs80309312    C    G    117.88    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=13.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:4,5:9:99:148,0,132
10    81058027    rs1250552    A    G    479.19    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.334;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.939;QD=13.31;ReadPosRankSum=1.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478357    GT:AD:DP:GQ:PL    0/1:20,16:36:99:509,0,704
10    81060474    rs1250549    T    C    135.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.367;MQ=50.65;MQ0=0;MQRankSum=-1.369;QD=8.44;ReadPosRankSum=2.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478357    GT:AD:DP:GQ:PL    0/1:8,8:16:99:165,0,239
10    81060743    rs78939689    T    C    362.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478357    GT:AD:DP:GQ:PL    1/1:0,14:14:36.08:395,36,0
10    81061724    rs10824740    G    A    397.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.589;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.604;QD=18.94;ReadPosRankSum=2.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:9,12:21:99:428,0,222
10    81061817    rs79327416    G    C    811.25    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.168;DB;DP=77;Dels=0.0;FS=12.067;HRun=0;HaplotypeScore=0.734;MQ=59.4;MQ0=0;MQRankSum=-0.448;QD=10.54;ReadPosRankSum=0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:41,36:77:99:841,0,1202
10    81064719    rs2296425    G    A    68.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
10    81065375    rs78060082    C    T    527.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.808;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=59.62;MQ0=0;MQRankSum=0.717;QD=10.77;ReadPosRankSum=-0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:28,21:49:99:558,0,779
10    81065774    rs1250557    G    T    143.87    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=20.55;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:2,5:7:63.34:174,0,63
10    81065938    rs148342874    C    T    395.59    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.28;MQ0=0;MQRankSum=0.0;QD=12.36;ReadPosRankSum=0.614;SNPEFF_AMINO_ACID_CHANGE=D737;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_81065857_81066100;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372347    GT:AD:DP:GQ:PL    0/1:19,13:32:99:426,0,548
10    81066982    rs1250555    C    T    112.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:145,12,0
10    81067480    rs1972346    C    G    144.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.64;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMIZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334512    GT:AD:DP:GQ:PL    0/1:2,5:7:50.16:174,0,50
10    81108956    rs2233718    A    G    566.64    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.499;DB;DP=32;Dels=0.0;FS=3.774;HRun=1;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=0.077;QD=17.71;ReadPosRankSum=-0.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPIF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225174    GT:AD:DP:GQ:PL    0/1:13,19:32:99:597,0,445
10    81192577    rs7898643    A    G    44.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.95;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372333    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:75,0,28
10    81272720    .    C    T    96.85    MQFilter40;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.029;DP=105;Dels=0.0;FS=18.432;HRun=0;HaplotypeScore=0.9734;MQ=34.36;MQ0=3;MQRankSum=-2.86;QD=0.92;ReadPosRankSum=0.826;SNPEFF_AMINO_ACID_CHANGE=S105;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_81272357_81276188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5AL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000520547    GT:AD:DP:GQ:PL    0/1:88,17:105:99:127,0,2187
10    81272881    .    A    G    574.39    MQFilter40    AB=0.363;AC=1;AF=0.50;AN=2;BaseQRankSum=1.803;DP=91;Dels=0.0;FS=7.974;HRun=2;HaplotypeScore=0.9832;MQ=21.55;MQ0=6;MQRankSum=0.227;QD=6.31;ReadPosRankSum=-0.653;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5AL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520547    GT:AD:DP:GQ:PL    0/1:33,58:91:99:604,0,330
10    81318545    rs2217231    A    T    815.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484410    GT:AD:DP:GQ:PL    1/1:0,26:26:69.20:849,69,0
10    81318820    rs17880349    G    A    3013.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.27;MQ0=0;QD=34.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484410    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3047,235,0
10    81318930    rs1250943    C    G    605.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=40.13;MQ0=6;QD=19.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484410    GT:AD:DP:GQ:PL    1/1:1,30:31:54.16:639,54,0
10    81319214    rs1059046    G    T    849.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.3;MQ0=19;QD=12.32;SNPEFF_AMINO_ACID_CHANGE=T24N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_81319137_81319262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537207    GT:AD:DP:GQ:PL    1/1:0,68:69:93.08:883,93,0
10    81319267    rs1650232    C    T    527.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.78;MQ0=22;QD=10.56;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000484410    GT:AD:DP:GQ:PL    1/1:1,46:50:57.08:561,57,0
10    81319423    rs1975008    C    T    429.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.51;MQ0=0;QD=33.05;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000537207    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:463,36,0
10    81319483    rs1975007    A    G    354.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.42;MQ0=0;QD=27.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372325    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:387,30,0
10    81342084    rs4980093    A    C    667.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MBL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402234    GT:AD:DP:GQ:PL    1/1:0,24:24:57.13:701,57,0
10    81342369    rs34032311    G    T    206.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.7;MQ0=0;QD=25.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MBL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402234    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:240,18,0
10    81343036    rs3855862    G    A    647.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.52;MQ0=2;QD=26.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MBL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402234    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:680,60,0
10    81343177    rs36137304    T    C    995.36    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.56;MQ0=0;QD=33.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MBL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402234    GT:AD:DP:GQ:PL    1/1:0,30:30:87.26:1028,87,0
10    81343237    rs2162669    T    C    141.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.27;MQ0=0;QD=23.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MBL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402234    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:174,15,0
10    81371554    rs3997775    T    A    134.33    QDFilter2    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=102;Dels=0.0;FS=9.238;HRun=0;HaplotypeScore=0.0;MQ=42.09;MQ0=14;MQRankSum=-5.798;QD=1.32;ReadPosRankSum=1.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372308    GT:AD:DP:GQ:PL    0/1:72,30:102:99:164,0,2245
10    81371729    rs1136450    C    G    1187.55    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.93;MQ0=7;MQRankSum=1.564;QD=24.74;ReadPosRankSum=0.718;SNPEFF_AMINO_ACID_CHANGE=L50V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_81371559_81371753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372308    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1221,111,0
10    81373081    rs139930635    C    T    965.35    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.4;DB;DP=67;Dels=0.0;FS=8.072;HRun=1;HaplotypeScore=2.5149;MQ=56.84;MQ0=0;MQRankSum=0.527;QD=14.41;ReadPosRankSum=0.745;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486922    GT:AD:DP:GQ:PL    0/1:36,31:67:99:995,0,1084
10    81373182    rs4253524    G    C    337.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486922    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:370,30,0
10    81681454    rs2257414    A    G    70.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=52.5;MQ0=0;MQRankSum=-0.358;QD=11.81;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MBL1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453174    GT:AD:DP:GQ:PL    0/1:3,3:6:68.47:101,0,68
10    81682645    rs1054053    A    G    338.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.596;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=58.43;MQ0=0;MQRankSum=-0.299;QD=12.1;ReadPosRankSum=1.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MBL1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453174    GT:AD:DP:GQ:PL    0/1:14,14:28:99:369,0,476
10    81697999    rs68057537    AAGTC    A    889.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.033;DB;DP=36;FS=1.348;HRun=0;HaplotypeScore=172.8456;IndelType=D;MQ=57.44;MQ0=0;MQRankSum=-0.116;QD=24.71;ReadPosRankSum=-0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444384    GT:AD:DP:GQ:PL    0/1:18,18:36:99:928,0,1293
10    81698095    rs12241521    C    A    97.81    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.89;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444384    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,205
10    81698097    rs2819098    G    A    95.52    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.61;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444384    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,142
10    81701722    rs2243639    T    C    402.99    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.54;MQ0=0;MQRankSum=0.628;QD=9.83;ReadPosRankSum=-1.136;SNPEFF_AMINO_ACID_CHANGE=T180A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_81701710_81701826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372292    GT:AD:DP:GQ:PL    0/1:25,16:41:99:433,0,836
10    81742057    rs10159532    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFTPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444384    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    81841692    rs1932574    G    T    1022.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-1.521;QD=13.46;ReadPosRankSum=-0.588;SNPEFF_AMINO_ACID_CHANGE=L61;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_81841597_81841700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372274    GT:AD:DP:GQ:PL    0/1:38,38:76:99:1053,0,1291
10    81850398    rs1932577    T    C    273.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372277    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:306,24,0
10    81901722    rs745182    C    T    71.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.2;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372263    GT:AD:DP:GQ:PL    0/1:2,3:5:62.84:101,0,63
10    81904097    .    G    GAGA    276.96    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DP=11;FS=0.0;HRun=0;HaplotypeScore=55.4418;IndelType=I;MQ=55.66;MQ0=0;MQRankSum=-0.676;QD=25.18;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=G52GE;SNPEFF_CODON_CHANGE=gga/ggAGAa;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_10_81903979_81904099;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372270    GT:AD:DP:GQ:PL    0/1:6,5:11:99:316,0,226
10    81904157    rs71481553    A    G    65.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=10.99;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372263    GT:AD:DP:GQ:PL    0/1:3,3:6:95.96:96,0,109
10    81904461    rs112920117    T    C    39.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372263    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
10    81904542    rs143576526    C    T    40.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372263    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:70,0,34
10    81904564    rs148022488    G    A    115.60    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.12;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372263    GT:AD:DP:GQ:PL    0/1:1,4:5:18.39:146,0,18
10    81915790    rs2789687    T    C    546.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372219    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:580,45,0
10    81915966    rs2784772    T    C    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372219    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
10    81916055    rs36073865    C    T    101.44    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.597;QD=9.22;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372219    GT:AD:DP:GQ:PL    0/1:7,4:11:99:131,0,249
10    81916355    rs12779139    T    C    117.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=57.66;MQ0=0;MQRankSum=1.001;QD=11.73;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475974    GT:AD:DP:GQ:PL    0/1:4,6:10:89.19:147,0,89
10    81917320    rs12775374    G    A    354.95    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.254;DB;DP=33;Dels=0.0;FS=12.638;HRun=0;HaplotypeScore=2.9049;MQ=57.42;MQ0=0;MQRankSum=0.056;QD=10.76;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265447    GT:AD:DP:GQ:PL    0/1:21,12:33:99:385,0,563
10    81917629    rs12767142    T    C    771.05    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=47;Dels=0.0;FS=4.659;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=16.41;ReadPosRankSum=-2.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265447    GT:AD:DP:GQ:PL    0/1:21,26:47:99:801,0,648
10    81917957    rs3862518    T    C    71.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=10.21;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265447    GT:AD:DP:GQ:PL    0/1:2,5:7:65.29:101,0,65
10    81921553    rs2784774    T    C    72.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481805    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
10    81921810    rs2304410    T    C    112.80    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=11;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.25;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481805    GT:AD:DP:GQ:PL    0/1:4,7:11:99:143,0,133
10    81922971    rs35180576    G    A    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.41;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445524    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:73,0,28
10    81923205    rs2236558    T    G    164.52    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=10.28;ReadPosRankSum=-0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445524    GT:AD:DP:GQ:PL    0/1:9,7:16:99:195,0,299
10    81923959    rs12762098    G    C    222.59    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.992;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=57.77;MQ0=0;MQRankSum=0.272;QD=10.6;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437799    GT:AD:DP:GQ:PL    0/1:8,13:21:99:253,0,209
10    81924055    rs10466226    A    G    95.80    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437799    GT:AD:DP:GQ:PL    0/1:1,4:5:21.95:126,0,22
10    81925982    rs68002596    CA    C    59.99    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=11;FS=0.0;HRun=11;HaplotypeScore=36.5126;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=-1.221;QD=5.45;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437799    GT:AD:DP:GQ:PL    0/1:6,5:11:72.01:99,0,72
10    81926718    rs2228427    A    G    155.14    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=19.39;ReadPosRankSum=0.572;SNPEFF_AMINO_ACID_CHANGE=I131;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_81926646_81926740;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424188    GT:AD:DP:GQ:PL    0/1:2,6:8:54.44:185,0,54
10    81926750    rs34332933    G    C    143.11    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=20.44;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437799    GT:AD:DP:GQ:PL    0/1:2,5:7:55.37:173,0,55
10    81927059    rs2229554    C    T    230.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=30;Dels=0.0;FS=1.708;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.506;QD=7.67;ReadPosRankSum=-0.154;SNPEFF_AMINO_ACID_CHANGE=R158Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_81926982_81927069;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537102    GT:AD:DP:GQ:PL    0/1:20,10:30:99:260,0,535
10    81932453    rs61860035    C    G    139.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.683;QD=15.48;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463657    GT:AD:DP:GQ:PL    0/1:3,6:9:99:169,0,103
10    81932509    rs75804987    C    T    386.90    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.336;DB;DP=23;Dels=0.0;FS=1.837;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.735;QD=16.82;ReadPosRankSum=-0.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463657    GT:AD:DP:GQ:PL    0/1:10,13:23:99:417,0,312
10    81932680    rs11201972    C    T    556.18    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=3.684;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=23.17;ReadPosRankSum=-1.461;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_81932563_81932777;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437799    GT:AD:DP:GQ:PL    0/1:7,17:24:99:586,0,130
10    81932790    rs2236556    T    C    118    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265447    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
10    82007125    rs76303433    G    A    48.38    MQFilter40;QDFilter2    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DB;DP=48;Dels=0.0;FS=12.02;HRun=0;HaplotypeScore=1.5717;MQ=33.35;MQ0=9;MQRankSum=-1.243;QD=1.01;ReadPosRankSum=-0.113;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:36,11:48:78.37:78,0,828
10    82007218    rs185034903    C    T    341.15    MQFilter40    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.014;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4649;MQ=26.64;MQ0=11;MQRankSum=-1.299;QD=6.96;ReadPosRankSum=0.254;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:26,22:49:99:371,0,437
10    82012310    rs7092394    T    C    68.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.58;ReadPosRankSum=-1.683;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_82009466_82013395;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:6,3:9:98.20:98,0,205
10    82012599    rs12219032    T    C    1569.83    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=3.138;DB;DP=96;Dels=0.0;FS=10.634;HRun=1;HaplotypeScore=2.6885;MQ=59.81;MQ0=0;MQRankSum=0.6;QD=16.35;ReadPosRankSum=0.685;SNPEFF_AMINO_ACID_CHANGE=S39;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82009466_82013395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:42,53:96:99:1600,0,1219
10    82012748    rs12217395    G    A    1304.07    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.153;DB;DP=87;Dels=0.0;FS=2.915;HRun=1;HaplotypeScore=1.8055;MQ=59.25;MQ0=0;MQRankSum=-0.429;QD=14.99;ReadPosRankSum=-1.684;SNPEFF_AMINO_ACID_CHANGE=S89N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82009466_82013395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:38,49:87:99:1334,0,1160
10    82012791    rs71481580    G    T    1074.22    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.045;DB;DP=77;Dels=0.0;FS=7.88;HRun=1;HaplotypeScore=1.7998;MQ=59.46;MQ0=0;MQRankSum=-0.304;QD=13.95;ReadPosRankSum=-0.68;SNPEFF_AMINO_ACID_CHANGE=W103C;SNPEFF_CODON_CHANGE=tgG/tgT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82009466_82013395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:34,43:77:99:1104,0,1114
10    82012954    rs12773664    A    G    858.30    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.386;DB;DP=55;Dels=0.0;FS=1.155;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=15.61;ReadPosRankSum=-0.161;SNPEFF_AMINO_ACID_CHANGE=I158V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82009466_82013395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:24,31:55:99:888,0,774
10    82012967    rs12411782    G    T    1145.32    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.145;DB;DP=61;Dels=0.0;FS=2.46;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.707;QD=18.78;ReadPosRankSum=-0.547;SNPEFF_AMINO_ACID_CHANGE=C162F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82009466_82013395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:26,35:61:99:1175,0,844
10    82013022    rs35266651    G    A    1829.82    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=5.37;DB;DP=122;Dels=0.0;FS=0.776;HRun=1;HaplotypeScore=2.8604;MQ=59.81;MQ0=0;MQRankSum=1.008;QD=15.0;ReadPosRankSum=0.598;SNPEFF_AMINO_ACID_CHANGE=P180;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82009466_82013395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:57,65:122:99:1860,0,1645
10    82013119    rs12411806    G    A    1842.64    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=2.773;DB;DP=132;Dels=0.0;FS=5.601;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;MQRankSum=-0.721;QD=13.96;ReadPosRankSum=0.626;SNPEFF_AMINO_ACID_CHANGE=G213S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82009466_82013395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359195.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356374    GT:AD:DP:GQ:PL    0/1:70,62:132:99:1873,0,2168
10    82033594    rs2993763    G    A    1638.32    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.928;DB;DP=119;Dels=0.0;FS=1.497;HRun=0;HaplotypeScore=1.2434;MQ=59.81;MQ0=0;MQRankSum=-1.714;QD=13.77;ReadPosRankSum=-0.526;SNPEFF_AMINO_ACID_CHANGE=Y377;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82033215_82033639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:58,61:119:99:1668,0,1756
10    82033683    rs4933327    G    A    699.68    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.563;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.01;QD=13.72;ReadPosRankSum=-0.786;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455001    GT:AD:DP:GQ:PL    0/1:26,25:51:99:730,0,941
10    82034262    rs2994388    G    A    1129.75    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=59.3;MQ0=0;MQRankSum=0.286;QD=17.12;ReadPosRankSum=0.859;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455001    GT:AD:DP:GQ:PL    0/1:28,38:66:99:1160,0,680
10    82034842    rs10887711    A    G    53.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.94;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=A294;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82034773_82034955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:6,3:9:83.41:83,0,174
10    82034854    rs10788546    T    C    148.06    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=11.39;ReadPosRankSum=-1.2;SNPEFF_AMINO_ACID_CHANGE=V290;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82034773_82034955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:7,6:13:99:178,0,198
10    82040052    rs1143694    A    G    480.05    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=35;Dels=0.0;FS=3.329;HRun=1;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=0.569;QD=13.72;ReadPosRankSum=0.017;SNPEFF_AMINO_ACID_CHANGE=A142;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82039929_82040072;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:18,17:35:99:510,0,465
10    82040162    rs71481596    C    T    147.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.8667;MQ=57.66;MQ0=0;MQRankSum=0.676;QD=14.71;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:5,5:10:99:177,0,155
10    82040346    rs2282367    A    G    373.92    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.108;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.25;MQ0=0;MQRankSum=0.02;QD=12.06;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:17,14:31:99:404,0,582
10    82040602    rs71481597    A    G    249.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=13.85;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:9,9:18:99:279,0,282
10    82043576    rs2236569    G    A    258.99    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=22;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.462;QD=11.77;ReadPosRankSum=0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:12,10:22:99:289,0,424
10    82045354    rs10887721    G    C    279.73    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=23;Dels=0.0;FS=1.935;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.708;QD=12.16;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372206    GT:AD:DP:GQ:PL    0/1:12,11:23:99:310,0,393
10    82049251    .    T    TTTTTTC    1050.74    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.44;DP=27;FS=0.0;HRun=0;HaplotypeScore=133.6796;IndelType=I;MQ=53.78;MQ0=0;MQRankSum=-0.464;QD=38.92;ReadPosRankSum=-0.073;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455001    GT:AD:DP:GQ:PL    0/1:12,14:27:99:1090,0,595
10    82095968    rs1340383    T    G    124.70    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=22;Dels=0.0;FS=4.506;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.117;QD=5.67;ReadPosRankSum=-0.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421924    GT:AD:DP:GQ:PL    0/1:15,7:22:99:155,0,434
10    82098881    rs35605779    A    T    479.60    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.27;DB;DP=30;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=15.99;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=V124D;SNPEFF_CODON_CHANGE=gTt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82098853_82098909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372202    GT:AD:DP:GQ:PL    0/1:14,16:30:99:510,0,390
10    82112488    rs1572819    A    G    39.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=6.57;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372202    GT:AD:DP:GQ:PL    0/1:4,2:6:69.41:69,0,107
10    82122523    rs1538819    A    G    953.09    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=0.797;DB;DP=47;Dels=0.0;FS=2.746;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.205;QD=20.28;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256039    GT:AD:DP:GQ:PL    0/1:17,30:47:99:983,0,509
10    82126808    rs1047952    C    G    466.97    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.334;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.18;QD=12.62;ReadPosRankSum=-1.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411538    GT:AD:DP:GQ:PL    0/1:21,16:37:99:497,0,730
10    82182296    rs1870142    G    A    340.93    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.553;DB;DP=28;Dels=0.0;FS=3.332;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=12.18;ReadPosRankSum=1.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372181    GT:AD:DP:GQ:PL    0/1:15,13:28:99:371,0,539
10    82182328    rs1870143    G    A    625.98    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.387;QD=24.08;ReadPosRankSum=0.809;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372181    GT:AD:DP:GQ:PL    0/1:7,19:26:99:656,0,212
10    82191643    rs6585994    A    G    224.18    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=24.91;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372181    GT:AD:DP:GQ:PL    0/1:2,7:9:54.79:254,0,55
10    82269238    rs10785897    C    T    519.57    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.368;DB;DP=41;Dels=0.0;FS=1.237;HRun=1;HaplotypeScore=2.444;MQ=60.0;MQ0=0;MQRankSum=-0.834;QD=12.67;ReadPosRankSum=0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341863    GT:AD:DP:GQ:PL    0/1:17,24:41:99:550,0,502
10    82280137    rs1878036    T    G    94.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.86;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265450    GT:AD:DP:GQ:PL    0/1:8,4:12:99:124,0,283
10    82280140    rs873257    C    T    120.98    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=9.31;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265450    GT:AD:DP:GQ:PL    0/1:8,5:13:99:151,0,284
10    82330136    rs4933445    C    T    217.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.663;QD=15.57;ReadPosRankSum=1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313455    GT:AD:DP:GQ:PL    0/1:7,7:14:99:248,0,174
10    82331347    rs59617064    A    G    355.51    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=37;Dels=0.0;FS=1.324;HRun=0;HaplotypeScore=0.0;MQ=58.62;MQ0=0;MQRankSum=-0.7;QD=9.61;ReadPosRankSum=0.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313455    GT:AD:DP:GQ:PL    0/1:22,15:37:99:386,0,644
10    82363340    rs7069048    C    A    73.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.47;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=R168;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82363335_82363551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313455    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:104,0,29
10    82363404    rs7075840    A    G    78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.38;QD=13.0;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=H189R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_82363335_82363551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313455    GT:AD:DP:GQ:PL    0/1:2,4:6:65.42:108,0,65
10    83809752    rs11817202    C    A    167.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372141    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
10    83809837    rs2881607    G    A    212.70    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.329;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.63;MQ0=0;MQRankSum=0.212;QD=12.51;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372141    GT:AD:DP:GQ:PL    0/1:7,10:17:99:243,0,250
10    83809889    rs7917541    A    G    452.41    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.631;DB;DP=37;Dels=0.0;FS=1.648;HRun=0;HaplotypeScore=0.5784;MQ=59.67;MQ0=0;MQRankSum=0.805;QD=12.23;ReadPosRankSum=0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372141    GT:AD:DP:GQ:PL    0/1:18,19:37:99:482,0,623
10    83809920    rs112528505    A    ATGT    1710.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.583;DB;DP=54;FS=1.174;HRun=0;HaplotypeScore=214.8809;IndelType=I;MQ=56.25;MQ0=0;MQRankSum=-1.769;QD=31.68;ReadPosRankSum=-0.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372141    GT:AD:DP:GQ:PL    0/1:27,27:54:99:1750,0,971
10    84624927    rs479772    T    C    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372141    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
10    84625107    rs478010    C    T    381.24    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.981;DB;DP=28;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.382;QD=13.62;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372141    GT:AD:DP:GQ:PL    0/1:13,15:28:99:411,0,444
10    84711147    rs4933861    C    T    507.99    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.301;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=16.39;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372141    GT:AD:DP:GQ:PL    0/1:15,16:31:99:538,0,499
10    84745256    rs2295933    C    T    198.07    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.168;DB;DP=33;Dels=0.0;FS=3.315;HRun=0;HaplotypeScore=0.9933;MQ=58.73;MQ0=0;MQRankSum=-0.243;QD=6.0;ReadPosRankSum=0.43;SNPEFF_AMINO_ACID_CHANGE=S312;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_84744854_84745361;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537893    GT:AD:DP:GQ:PL    0/1:21,12:33:99:228,0,603
10    85902394    rs3816716    G    C    483.11    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.288;DB;DP=29;Dels=0.0;FS=3.89;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=16.66;ReadPosRankSum=0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHITM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339736    GT:AD:DP:GQ:PL    0/1:12,17:29:99:513,0,384
10    85908688    rs7069909    G    A    38.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.78;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GHITM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339736    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:68,0,34
10    85944313    rs12250279    A    T    341.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372126    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:374,33,0
10    85960296    rs10788334    C    T    46.39    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.6;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:76,0,33
10    85960395    rs4933975    A    G    65.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.87;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=A159;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85960357_85960443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    0/1:3,3:6:95.22:95,0,105
10    85961758    rs11200922    A    G    37.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
10    85965819    rs10788335    A    G    151.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:184,15,0
10    85971347    rs4933978    G    A    1210.62    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.911;DB;DP=85;Dels=0.0;FS=0.85;HRun=1;HaplotypeScore=2.578;MQ=59.56;MQ0=0;MQRankSum=1.158;QD=14.24;ReadPosRankSum=0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1241,0,1336
10    85972043    rs10749482    A    G    1148.89    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.288;DB;DP=100;Dels=0.0;FS=0.756;HRun=2;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=-0.226;QD=11.49;ReadPosRankSum=0.92;SNPEFF_AMINO_ACID_CHANGE=E258;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85971935_85972163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440770    GT:AD:DP:GQ:PL    0/1:56,44:100:99:1179,0,1652
10    85973265    rs4244946    G    A    80.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.11;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:110,0,29
10    85974236    rs3814213    T    C    1018.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=84;Dels=0.0;FS=3.065;HRun=1;HaplotypeScore=0.9734;MQ=59.17;MQ0=0;MQRankSum=2.3;QD=12.12;ReadPosRankSum=0.39;SNPEFF_AMINO_ACID_CHANGE=T517;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85973838_85977119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440770    GT:AD:DP:GQ:PL    0/1:42,42:84:99:1048,0,1306
10    85974381    rs3814212    A    G    1305.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1339,99,0
10    85978939    rs4244947    G    A    614.50    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.924;DB;DP=53;Dels=0.0;FS=1.155;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=1.947;QD=11.59;ReadPosRankSum=0.135;SNPEFF_AMINO_ACID_CHANGE=L715;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85978835_85979377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    0/1:30,23:53:99:644,0,980
10    85978991    rs7895270    C    T    537.48    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=53;Dels=0.0;FS=10.453;HRun=1;HaplotypeScore=0.5784;MQ=59.13;MQ0=0;MQRankSum=-0.323;QD=10.14;ReadPosRankSum=-0.266;SNPEFF_AMINO_ACID_CHANGE=L733;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85978835_85979377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332904    GT:AD:DP:GQ:PL    0/1:34,19:53:99:567,0,1043
10    85981801    rs6585847    T    G    998.32    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.044;DB;DP=73;Dels=0.0;FS=0.946;HRun=4;HaplotypeScore=0.9789;MQ=59.68;MQ0=0;MQRankSum=-1.272;QD=13.68;ReadPosRankSum=-0.386;SNPEFF_AMINO_ACID_CHANGE=T510P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85980327_85982436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372113    GT:AD:DP:GQ:PL    0/1:35,37:73:99:1028,0,1057
10    85985331    rs7898778    C    T    342.13    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.039;DB;DP=17;Dels=0.0;FS=5.051;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=20.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_85985167_85985345;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538192    GT:AD:DP:GQ:PL    0/1:6,11:17:99:372,0,108
10    85992478    rs3814210    T    C    767.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=G359;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85991349_85992659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:801,60,0
10    85992511    rs3814209    T    C    760.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=P348;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85991349_85992659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:794,60,0
10    85993690    rs3814208    T    C    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    85993717    rs3814207    G    A    279.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:312,24,0
10    85993836    rs4933986    A    G    1083.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3036;MQ=59.39;MQ0=0;QD=28.53;SNPEFF_AMINO_ACID_CHANGE=N296;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85993829_85994134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,38:38:93.26:1117,93,0
10    85993910    rs3814206    G    A    1996.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=32.21;SNPEFF_AMINO_ACID_CHANGE=L272;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85993829_85994134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2030,150,0
10    85994142    rs3829858    A    G    1962.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=59.63;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1996,153,0
10    85994380    rs6585848    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    85997250    rs10887259    G    A    139.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.98;SNPEFF_AMINO_ACID_CHANGE=G105;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_85996976_85997442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:173,15,0
10    85997508    rs74145777    C    T    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.25;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,99
10    86004736    rs2279228    A    G    81.02    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.26;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372105    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:111,0,30
10    86004873    rs2279227    T    C    66.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=7.41;ReadPosRankSum=1.422;SNPEFF_AMINO_ACID_CHANGE=T9;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_86004835_86004925;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358110    GT:AD:DP:GQ:PL    0/1:6,3:9:96.72:97,0,151
10    86010273    rs61199464    TAC    T    179.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=58.0155;IndelType=D;MQ=60.9;MQ0=0;QD=14.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469446    GT:AD:DP:GQ:PL    1/1:4,8:12:21.03:221,21,0
10    86012713    rs1042454    C    T    524.37    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DB;DP=37;Dels=0.0;FS=5.62;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.141;QD=14.17;ReadPosRankSum=-0.539;SNPEFF_AMINO_ACID_CHANGE=Y153;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_86012613_86012766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358110    GT:AD:DP:GQ:PL    0/1:20,17:37:99:554,0,483
10    86014215    rs74145779    C    T    596.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.886;DB;DP=45;Dels=0.0;FS=6.714;HRun=0;HaplotypeScore=0.9958;MQ=59.49;MQ0=0;MQRankSum=-0.616;QD=13.25;ReadPosRankSum=0.924;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372092    GT:AD:DP:GQ:PL    0/1:25,20:45:99:626,0,700
10    86018460    rs3526    A    G    57.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=15;Dels=0.0;FS=2.688;HRun=1;HaplotypeScore=1.9945;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=3.86;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478727    GT:AD:DP:GQ:PL    0/1:10,5:15:87.86:88,0,298
10    86185654    rs1336202    T    G    1136.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM190B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224756    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1170,87,0
10    86237184    rs10887305    C    T    32.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=10.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM190B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224756    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:62,0,34
10    87407363    rs10788461    C    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327946    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,71
10    87616034    rs117811337    G    A    196.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=14.06;ReadPosRankSum=1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327946    GT:AD:DP:GQ:PL    0/1:7,7:14:99:227,0,254
10    87966028    rs56757884    T    C    57.09    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=5.71;ReadPosRankSum=1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327946    GT:AD:DP:GQ:PL    0/1:7,3:10:87.08:87,0,219
10    88024553    rs10887569    C    T    119.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327946    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
10    88125921    rs10887587    C    T    31.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327946    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
10    88203068    rs7094132    T    C    1634.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=29.73;SNPEFF_AMINO_ACID_CHANGE=T1125;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88203032_88203120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298767    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1668,129,0
10    88203208    rs7094269    T    C    514.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263070    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:548,42,0
10    88212048    rs11345126    GA    G    70.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=6;FS=0.0;HRun=12;HaplotypeScore=23.6153;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=0.736;QD=11.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263070    GT:AD:DP:GQ:PL    1/1:1,5:6:12.49:112,12,0
10    88213604    rs6586011    A    G    306.26    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=2.097;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=0.518;QD=11.34;ReadPosRankSum=-0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263070    GT:AD:DP:GQ:PL    0/1:16,11:27:99:336,0,567
10    88220866    rs7922658    C    T    842.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263070    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:875,66,0
10    88230874    rs2288362    G    A    1092.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298767    GT:AD:DP:GQ:PL    1/1:0,33:33:87.22:1125,87,0
10    88233628    rs3758520    C    G    949.52    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.319;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=17.58;ReadPosRankSum=0.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298767    GT:AD:DP:GQ:PL    0/1:21,33:54:99:980,0,541
10    88233827    rs61856691    G    A    97.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=9.71;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298767    GT:AD:DP:GQ:PL    0/1:6,4:10:99:127,0,223
10    88256943    rs4934215    C    T    2037.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WAPAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298767    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2071,153,0
10    88414570    rs11202106    G    A    1732.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=P10;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88414374_88414684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241891    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1766,135,0
10    88417724    rs10788521    C    T    505.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241891    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:538,42,0
10    88422116    rs1079610    C    T    211.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.41;SNPEFF_AMINO_ACID_CHANGE=T394I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88422009_88422189;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000241891    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:244,18,0
10    88422151    rs3740337    C    A    176.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_AMINO_ACID_CHANGE=R406;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88422009_88422189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241891    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
10    88428335    rs2803558    T    C    235.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241891    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:269,21,0
10    88439005    rs4468255    G    A    384.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    1/1:1,12:13:33.07:418,33,0
10    88440996    rs2248643    C    G    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
10    88441708    rs55815121    C    T    61.95    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=3.64;ReadPosRankSum=-0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    0/1:12,5:17:91.94:92,0,407
10    88441709    rs56165849    A    G    61.95    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.95;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.58;QD=3.64;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    0/1:12,5:17:91.94:92,0,402
10    88445385    rs3740345    G    C    4118.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.28;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4118,301,0
10    88446633    rs1578895    A    T    77.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=11.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    1/1:0,5:7:9.03:110,9,0
10    88446811    rs113445294    G    A    1506.71    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.92;DB;DP=104;Dels=0.0;FS=0.841;HRun=0;HaplotypeScore=1.4105;MQ=59.33;MQ0=0;MQRankSum=-0.563;QD=14.49;ReadPosRankSum=1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    0/1:49,55:104:99:1537,0,1270
10    88446985    rs76615432    T    C    790.87    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.197;DB;DP=79;Dels=0.0;FS=5.026;HRun=0;HaplotypeScore=1.6006;MQ=58.7;MQ0=0;MQRankSum=-0.582;QD=10.01;ReadPosRankSum=-0.082;SNPEFF_AMINO_ACID_CHANGE=D168;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88446826_88447029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    0/1:47,32:79:99:821,0,1493
10    88447082    rs111941601    A    C    127.83    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.258;QD=5.33;ReadPosRankSum=-0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    0/1:16,7:24:99:158,0,591
10    88458996    rs113093002    TTC    T    1336.37    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=4.809;DB;DP=107;FS=8.95;HRun=0;HaplotypeScore=502.9512;IndelType=D;MQ=58.24;MQ0=0;MQRankSum=2.317;QD=12.37;ReadPosRankSum=-2.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    0/1:52,47:107:99:1375,0,754
10    88466243    .    T    C    1163.39    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.92;DP=103;Dels=0.0;FS=0.953;HRun=1;HaplotypeScore=0.7887;MQ=59.33;MQ0=0;MQRankSum=0.642;QD=11.3;ReadPosRankSum=-0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263066    GT:AD:DP:GQ:PL    0/1:59,44:103:99:1193,0,1648
10    88678748    rs1240188    A    T    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMPR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224764    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
10    88696381    rs4447076    A    G    107.49    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=7.17;ReadPosRankSum=0.059;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372027    GT:AD:DP:GQ:PL    0/1:9,6:15:99:137,0,335
10    88702350    rs4934281    G    C    1220.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=H509D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88702074_88703451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMRN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443699    GT:AD:DP:GQ:PL    1/1:0,35:35:96.30:1254,96,0
10    88717140    rs4244973    T    A    3770.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.79;MQ0=0;QD=34.27;SNPEFF_AMINO_ACID_CHANGE=V53;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88717135_88717372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMRN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372027    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3770,277,0
10    88717154    rs3750823    C    T    1259.97    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.645;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=59.78;MQ0=0;MQRankSum=-0.661;QD=11.89;ReadPosRankSum=-0.551;SNPEFF_AMINO_ACID_CHANGE=G49S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88717135_88717372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMRN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372027    GT:AD:DP:GQ:PL    0/1:59,47:106:99:1290,0,1681
10    88718436    rs1800373    A    C    480.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474994    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:514,39,0
10    88718761    rs3793899    T    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348795    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
10    88722473    rs62621086    T    G    42.64    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.793;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.586;QD=2.66;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348795    GT:AD:DP:GQ:PL    0/1:11,5:16:72.63:73,0,360
10    88722573    rs71473290    A    G    54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348795    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
10    88722658    rs71473291    C    A    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465679    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
10    88730106    rs2279602    C    T    183.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372012    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:216,18,0
10    88730177    rs2279601    A    G    143.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372012    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:176,15,0
10    88730312    rs4869    T    C    456.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=26.85;SNPEFF_AMINO_ACID_CHANGE=I47;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88730233_88730487;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf116;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372012    GT:AD:DP:GQ:PL    1/1:0,17:17:42.08:490,42,0
10    88730374    rs7960    C    T    338.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.81;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416348    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:372,30,0
10    88760398    rs113196969    C    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.56;MQ0=0;QD=17.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BMS1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372011    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
10    88761731    rs2984900    T    G    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.59;MQ0=0;QD=22.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BMS1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372011    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
10    88763955    rs1240407    T    C    1583.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.1;MQ0=2;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BMS1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372011    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1616,123,0
10    88767879    rs71019447    C    CT    88.50    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=10;FS=0.0;HRun=15;HaplotypeScore=90.1958;IndelType=I;MQ=37.88;MQ0=0;MQRankSum=-1.067;QD=8.85;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-96C23.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451760    GT:AD:DP:GQ:PL    0/1:3,7:10:12.05:127,0,12
10    88767930    rs79410989    G    T    745.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.129;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5785;MQ=41.51;MQ0=0;MQRankSum=2.281;QD=21.92;ReadPosRankSum=-1.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-96C23.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451760    GT:AD:DP:GQ:PL    1/1:2,32:34:63.16:778,63,0
10    88768253    rs2641563    A    G    8044.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=246;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.14;MQ0=0;QD=32.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-96C23.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451760    GT:AD:DP:GQ:PL    1/1:0,246:246:99:8044,641,0
10    88768423    rs2641562    A    G    7049.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7234;MQ=45.56;MQ0=0;QD=28.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-96C23.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451760    GT:AD:DP:GQ:PL    1/1:0,249:250:99:7049,557,0
10    88768657    rs1745901    C    T    7173.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=194;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6143;MQ=54.51;MQ0=0;QD=36.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-96C23.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451760    GT:AD:DP:GQ:PL    1/1:0,194:194:99:7174,542,0
10    88781976    rs3802665    G    A    1499.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM25A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444180    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1532,117,0
10    88782084    rs3802666    A    G    3326.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=51.55;MQ0=0;QD=30.51;SNPEFF_AMINO_ACID_CHANGE=E29;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88782071_88782133;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM25A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444180    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3326,262,0
10    88782151    rs3802668    C    T    2443.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=53.98;MQ0=0;MQRankSum=1.138;QD=34.42;ReadPosRankSum=1.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM25A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444180    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2476,161,0
10    88784481    rs66948676    A    G    4728.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8533;MQ=49.05;MQ0=0;QD=32.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM25A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465914    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4729,355,0
10    88818720    rs4933426    T    C    161.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=32.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLUD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465164    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
10    88917974    rs61858928    A    G    1017.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.47;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM35A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298784    GT:AD:DP:GQ:PL    1/1:0,34:34:90.18:1050,90,0
10    88935498    rs3127702    T    C    254.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.5;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM35A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298784    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
10    88935590    rs11202370    C    G    1715.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.68;MQ0=0;QD=38.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM35A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298784    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1749,132,0
10    88939962    rs7081609    T    C    4123.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.44;MQ0=13;QD=26.61;SNPEFF_AMINO_ACID_CHANGE=G698;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_88939832_88940060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM35A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298784    GT:AD:DP:GQ:PL    1/1:1,154:155:99:4124,343,0
10    88988731    .    C    G    101.24    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=115;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=5.41;MQ0=111;QD=0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381689    GT:AD:DP:GQ:PL    1/1:111,4:115:12.03:134,12,0
10    88994492    .    C    T    39.02    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=4.59;MQ0=57;MQRankSum=1.537;QD=0.62;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432986    GT:AD:DP:GQ:PL    1/1:29,33:63:8.97:71,9,0
10    89120661    rs139769515    G    C    491.04    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.25;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6927;MQ=15.25;MQ0=46;MQRankSum=1.352;QD=6.82;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=C197S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_89120238_89120937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381697    GT:AD:DP:GQ:PL    1/1:34,38:72:48.09:524,48,0
10    89124905    rs147808443    C    T    310.94    MQFilter40    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=5.039;DB;DP=100;Dels=0.0;FS=9.585;HRun=0;HaplotypeScore=0.0;MQ=17.01;MQ0=48;MQRankSum=0.437;QD=3.11;ReadPosRankSum=-0.301;SNPEFF_AMINO_ACID_CHANGE=P37L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_89124578_89124960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381691    GT:AD:DP:GQ:PL    0/1:51,49:100:99:341,0,347
10    89124914    rs149114452    T    A    306.46    MQFilter40    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.411;DB;DP=98;Dels=0.0;FS=13.605;HRun=0;HaplotypeScore=0.0;MQ=13.83;MQ0=52;MQRankSum=1.235;QD=3.13;ReadPosRankSum=-1.235;SNPEFF_AMINO_ACID_CHANGE=L40Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_89124578_89124960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM22D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381691    GT:AD:DP:GQ:PL    0/1:48,50:98:99:336,0,207
10    89463284    rs6586097    T    C    94.12    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.663;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.56;ReadPosRankSum=2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361175    GT:AD:DP:GQ:PL    0/1:7,4:11:99:124,0,238
10    89463290    rs6586098    C    A    99.87    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=7.68;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361175    GT:AD:DP:GQ:PL    0/1:8,5:13:99:130,0,291
10    89463460    rs7923151    G    C    1437.18    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=4.245;DB;DP=106;Dels=0.0;FS=1.652;HRun=1;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=0.498;QD=13.56;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361175    GT:AD:DP:GQ:PL    0/1:56,50:106:99:1467,0,1480
10    89469083    rs72025574    CATAT    C    582.74    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=3.422;DB;DP=29;FS=1.569;HRun=0;HaplotypeScore=145.0611;IndelType=D;MQ=60.74;MQ0=0;MQRankSum=0.246;QD=20.09;ReadPosRankSum=0.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361175    GT:AD:DP:GQ:PL    0/1:14,14:29:99:622,0,650
10    89472721    rs112298562    CT    C    75.15    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=83.0952;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=1.266;QD=3.76;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361175    GT:AD:DP:GQ:PL    0/1:11,8:20:99:114,0,222
10    89475640    rs76158955    GA    G    812.97    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=5.368;DB;DP=85;FS=2.341;HRun=11;HaplotypeScore=305.9561;IndelType=D;MQ=60.47;MQ0=0;MQRankSum=-0.592;QD=9.56;ReadPosRankSum=2.187;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465996    GT:AD:DP:GQ:PL    0/1:40,45:85:99:852,0,814
10    89475692    rs2302406    A    G    669.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.92;MQ0=0;MQRankSum=0.446;QD=16.75;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465996    GT:AD:DP:GQ:PL    0/1:20,20:40:99:700,0,694
10    89475717    rs2302407    G    A    458.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.85;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.89;MQ0=0;MQRankSum=-0.253;QD=16.36;ReadPosRankSum=0.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465996    GT:AD:DP:GQ:PL    0/1:14,14:28:99:488,0,457
10    90034488    rs10749568    A    G    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437752    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
10    90034899    rs45585838    C    T    66.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=11.15;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371947    GT:AD:DP:GQ:PL    0/1:3,3:6:92.52:97,0,93
10    90122512    rs3740279    C    T    202.53    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=14.47;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331772    GT:AD:DP:GQ:PL    0/1:5,9:14:99:233,0,161
10    90341844    rs72820095    T    C    107.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331772    GT:AD:DP:GQ:PL    0/1:6,4:10:99:137,0,217
10    90342837    rs2296545    C    G    1253.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.03;MQ0=0;QD=29.16;SNPEFF_AMINO_ACID_CHANGE=E37D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90342830_90342970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNLS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331772    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1287,105,0
10    90356022    rs138536061    CTTATT    C    466.09    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=18;FS=3.854;HRun=0;HaplotypeScore=111.938;IndelType=D;MQ=51.72;MQ0=0;MQRankSum=-1.415;QD=25.89;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526923    GT:AD:DP:GQ:PL    0/1:8,10:18:99:505,0,582
10    90356598    rs1409136    A    G    4491.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.065;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4256;MQ=60.0;MQ0=0;MQRankSum=1.576;QD=33.27;ReadPosRankSum=1.081;SNPEFF_AMINO_ACID_CHANGE=I210V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90356547_90356693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIPJ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371939    GT:AD:DP:GQ:PL    1/1:1,134:135:99:4492,308,0
10    90362307    rs72055519    CT    C    107.56    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=50;FS=3.4;HRun=16;HaplotypeScore=318.7546;IndelType=D;MQ=55.01;MQ0=0;MQRankSum=-1.029;QD=2.15;ReadPosRankSum=-0.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371939    GT:AD:DP:GQ:PL    0/1:33,11:50:99:147,0,346
10    90365290    rs2274312    A    G    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371939    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
10    90427173    rs12414074    G    C    711.17    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.964;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=59.67;MQ0=0;MQRankSum=0.514;QD=10.16;ReadPosRankSum=1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238983    GT:AD:DP:GQ:PL    0/1:39,30:70:99:741,0,1259
10    90431938    rs12254574    G    A    155.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=19.47;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238983    GT:AD:DP:GQ:PL    0/1:2,6:8:55.92:186,0,56
10    90433345    rs6586145    T    A    1564.99    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=3.148;DB;DP=97;Dels=0.0;FS=10.641;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=16.13;ReadPosRankSum=-1.926;SNPEFF_AMINO_ACID_CHANGE=F191I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90433345_90433491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355843    GT:AD:DP:GQ:PL    0/1:42,55:97:99:1595,0,1291
10    90435507    rs11202805    C    T    307.84    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.342;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=58.63;MQ0=0;MQRankSum=0.342;QD=18.11;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238983    GT:AD:DP:GQ:PL    0/1:7,10:17:99:338,0,220
10    90436201    rs1432444    C    T    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238983    GT:AD:DP:GQ:PL    0/1:4,2:6:62.60:63,0,125
10    90437991    rs7902842    A    G    61.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.29;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238983    GT:AD:DP:GQ:PL    0/1:2,3:5:64.92:91,0,65
10    90438047    rs2275491    T    C    182.80    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=12.19;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238983    GT:AD:DP:GQ:PL    0/1:8,7:15:99:213,0,292
10    90438207    rs1228187    A    G    1141.13    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=85;Dels=0.0;FS=2.965;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.948;QD=13.43;ReadPosRankSum=0.445;SNPEFF_AMINO_ACID_CHANGE=Q289;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90438202_90438571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355843    GT:AD:DP:GQ:PL    0/1:46,39:85:99:1171,0,1420
10    90484243    rs376036    C    T    1750.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1783,132,0
10    90484420    rs56390975    C    A    2059.02    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=49.2919;MQ=60.19;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2092,154,0
10    90484422    rs11358016    GA    G    1549.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=7;HaplotypeScore=358.3793;IndelType=D;MQ=60.19;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    1/1:2,54:56:99:1592,156,0
10    90486300    rs437261    A    G    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    90486318    rs441719    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    90486445    rs72822172    G    A    143.29    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    0/1:1,5:6:17.20:173,0,17
10    90486793    rs407433    T    G    269.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:302,24,0
10    90491867    rs17433168    C    T    1312.41    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=0.24;DB;DP=79;Dels=0.0;FS=9.397;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.456;QD=16.61;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    0/1:39,40:79:99:1342,0,1182
10    90492356    rs11202833    A    G    2020.80    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=136;Dels=0.0;FS=3.64;HRun=0;HaplotypeScore=1.782;MQ=59.32;MQ0=0;MQRankSum=0.073;QD=14.86;ReadPosRankSum=0.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404190    GT:AD:DP:GQ:PL    0/1:63,73:136:99:2051,0,1968
10    90524456    rs7912222    G    A    142.86    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.114;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=7.52;ReadPosRankSum=-0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404459    GT:AD:DP:GQ:PL    0/1:13,6:19:99:173,0,495
10    90526379    rs402781    C    T    150.83    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=21.55;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404459    GT:AD:DP:GQ:PL    0/1:2,5:7:59.37:181,0,59
10    90528499    rs450011    C    T    465.17    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.964;DB;DP=56;Dels=0.0;FS=2.927;HRun=1;HaplotypeScore=0.9996;MQ=59.19;MQ0=0;MQRankSum=-1.085;QD=8.16;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404459    GT:AD:DP:GQ:PL    0/1:37,19:56:99:495,0,1180
10    90530660    rs10788611    C    A    941.36    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.173;DB;DP=69;Dels=0.0;FS=9.076;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.981;QD=13.64;ReadPosRankSum=-0.596;SNPEFF_AMINO_ACID_CHANGE=T244N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90530602_90530748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404459    GT:AD:DP:GQ:PL    0/1:37,32:69:99:971,0,1193
10    90534698    rs303471    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404459    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
10    90534787    rs303472    T    G    115.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404459    GT:AD:DP:GQ:PL    0/1:2,4:6:64.35:145,0,64
10    90537732    rs303484    C    T    1021.48    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.273;DB;DP=83;Dels=0.0;FS=8.619;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.722;QD=12.31;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404459    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1051,0,1367
10    90538020    rs303485    A    G    466.05    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.486;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=10.84;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404459    GT:AD:DP:GQ:PL    0/1:24,19:43:99:496,0,734
10    90568182    rs3899739    A    G    1021.28    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=3.13;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1557;MQ=60.0;MQ0=0;MQRankSum=0.685;QD=15.96;ReadPosRankSum=1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404743    GT:AD:DP:GQ:PL    0/1:31,33:64:99:1051,0,809
10    90574222    rs303524    C    G    841.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.04;FS=0.0;HRun=6;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404743    GT:AD:DP:GQ:PL    1/1:0,24:24:72.21:875,72,0
10    90580144    rs10788615    C    T    1329.19    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=4.301;DB;DP=97;Dels=0.0;FS=2.849;HRun=0;HaplotypeScore=0.9998;MQ=59.57;MQ0=0;MQRankSum=-0.163;QD=13.7;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=H346;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90579989_90580303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539337    GT:AD:DP:GQ:PL    0/1:53,44:97:99:1359,0,1523
10    90585819    rs7893917    G    A    471.28    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DB;DP=49;Dels=0.0;FS=1.179;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-1.207;QD=9.62;ReadPosRankSum=1.487;SNPEFF_AMINO_ACID_CHANGE=G125;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90585795_90585872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371930    GT:AD:DP:GQ:PL    0/1:32,17:49:99:501,0,866
10    90588154    rs1977537    A    G    689.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371930    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:722,54,0
10    90588161    rs1029025    C    T    267.99    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.431;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.064;QD=13.4;ReadPosRankSum=-0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371930    GT:AD:DP:GQ:PL    0/1:11,9:20:99:298,0,394
10    90588535    rs1029024    G    A    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.2;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371930    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,108
10    90673047    rs34270879    G    A    928.40    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.77;DB;DP=78;Dels=0.0;FS=3.105;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.908;QD=11.9;ReadPosRankSum=0.374;SNPEFF_AMINO_ACID_CHANGE=E204K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90672858_90673215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAMBPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371924    GT:AD:DP:GQ:PL    0/1:44,34:78:99:958,0,1266
10    90749256    rs2234767    G    A    2329.38    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.794;DB;DP=176;Dels=0.0;FS=0.564;HRun=0;HaplotypeScore=1.7356;MQ=59.61;MQ0=0;MQRankSum=-0.306;QD=13.24;ReadPosRankSum=0.64;SNPEFF_AMINO_ACID_CHANGE=A11T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90749226_90749336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540197    GT:AD:DP:GQ:PL    0/1:93,82:176:99:2359,0,2556
10    90767347    rs2296602    C    T    56.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5315;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=8.03;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352159    GT:AD:DP:GQ:PL    0/1:4,3:7:86.20:86,0,143
10    90767395    rs2031611    G    C    514.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352159    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:547,42,0
10    90767640    rs2296601    C    T    472.91    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.328;QD=13.91;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352159    GT:AD:DP:GQ:PL    0/1:18,16:34:99:503,0,607
10    90768965    rs7911226    A    G    419.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460510    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:452,33,0
10    90771612    rs9658766    G    A    279.58    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2859;MQ=58.55;MQ0=0;MQRankSum=-0.766;QD=17.47;ReadPosRankSum=1.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371857    GT:AD:DP:GQ:PL    0/1:7,9:16:99:310,0,176
10    90771829    rs2234978    T    C    2152.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.33;MQ0=0;QD=31.2;SNPEFF_AMINO_ACID_CHANGE=T193;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_90771756_90771838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357339    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2186,172,0
10    90988250    rs2071509    C    G    579.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282673    GT:AD:DP:GQ:PL    1/1:0,17:18:45.15:612,45,0
10    91065949    rs17468739    A    C    2005.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=31.34;SNPEFF_AMINO_ACID_CHANGE=E79A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91065719_91069033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371826    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2039,156,0
10    91066075    rs2070845    A    G    2008.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=37.19;SNPEFF_AMINO_ACID_CHANGE=K121R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91065719_91069033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371826    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2041,153,0
10    91066460    rs954439    T    A    2639.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_AMINO_ACID_CHANGE=V249;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91065719_91069033;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371826    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2672,208,0
10    91066769    rs1727    C    A    1537.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.45;SNPEFF_AMINO_ACID_CHANGE=D352E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91065719_91069033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371826    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1571,114,0
10    91092189    rs12255504    C    G    247.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489359    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
10    91092558    rs10509571    T    A    212.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489359    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
10    91099630    rs3780878    T    C    1906.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=S227;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91098770_91100083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543062    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1940,153,0
10    91099943    rs10749607    C    G    950.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282673    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:983,72,0
10    91137826    rs304504    T    C    544.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354621    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:577,42,0
10    91143529    rs304494    T    A    2891.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=G153;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91143076_91144962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIT1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371809    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2924,229,0
10    91162497    rs303211    A    G    1992.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=59.72;MQ0=0;QD=29.73;SNPEFF_AMINO_ACID_CHANGE=K124;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91162038_91163607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546318    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2025,159,0
10    91178000    rs304448    C    T    1634.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=Y300;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91177575_91178576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFIT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416601    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1667,123,0
10    91193322    rs7090346    T    C    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341233    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
10    91344169    rs1063943    G    A    2035.21    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=148;Dels=0.0;FS=3.847;HRun=0;HaplotypeScore=2.575;MQ=59.53;MQ0=0;MQRankSum=1.17;QD=13.75;ReadPosRankSum=-0.316;SNPEFF_AMINO_ACID_CHANGE=D313;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91342745_91344222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322191    GT:AD:DP:GQ:PL    0/1:78,70:148:99:2065,0,2258
10    91352850    rs10160034    C    A    274.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.735;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.449;QD=13.72;ReadPosRankSum=-2.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:10,10:20:99:304,0,329
10    91352966    rs2296616    G    A    1509.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=30.81;SNPEFF_AMINO_ACID_CHANGE=C249;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91352954_91353077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322191    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1543,114,0
10    91358943    rs62620049    C    A    544.63    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.914;DB;DP=47;Dels=0.0;FS=9.012;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.871;QD=11.59;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:27,20:47:99:575,0,838
10    91371445    rs7896079    C    A    96.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=6.89;ReadPosRankSum=-0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:8,6:14:99:126,0,281
10    91371844    rs3802655    C    T    361.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.672;DB;DP=26;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=13.9;ReadPosRankSum=1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:14,12:26:99:392,0,376
10    91373847    rs7076397    A    G    455.60    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.696;DB;DP=44;Dels=0.0;FS=4.375;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.455;QD=10.35;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:25,19:44:99:486,0,747
10    91373944    rs7076537    A    C    195.81    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.543;DB;DP=24;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.908;QD=8.16;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:14,10:24:99:226,0,523
10    91373975    rs6586202    A    G    190.55    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=10.59;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:10,8:18:99:221,0,325
10    91404832    rs12769113    T    C    140.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=14.02;ReadPosRankSum=1.447;SNPEFF_AMINO_ACID_CHANGE=A76;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91404357_91405215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:4,6:10:99:170,0,116
10    91405044    rs61853459    C    T    222.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=20;Dels=0.0;FS=1.829;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.869;QD=11.12;ReadPosRankSum=-1.474;SNPEFF_AMINO_ACID_CHANGE=G6S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91404357_91405215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307534    GT:AD:DP:GQ:PL    0/1:10,10:20:99:252,0,240
10    91469419    rs10881630    C    A    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:73,0,30
10    91469576    rs10881631    T    C    45.56    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=4.56;ReadPosRankSum=-1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:7,3:10:75.56:76,0,257
10    91470590    rs7089326    T    C    108.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=15.52;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:3,4:7:87.50:139,0,88
10    91470660    rs7089473    T    G    209.71    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=13.11;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:7,9:16:99:240,0,185
10    91470834    rs1048057    A    C    490.76    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.704;DB;DP=56;Dels=0.0;FS=2.31;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=-0.486;QD=8.76;ReadPosRankSum=-1.186;SNPEFF_AMINO_ACID_CHANGE=R203;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91470718_91470902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:33,23:56:99:521,0,1017
10    91470953    rs10881632    A    G    40.16    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.014;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=2.23;ReadPosRankSum=0.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447580    GT:AD:DP:GQ:PL    0/1:15,3:18:70.15:70,0,499
10    91473887    rs11185853    G    A    310.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=28;Dels=0.0;FS=1.882;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=11.1;ReadPosRankSum=-2.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447580    GT:AD:DP:GQ:PL    0/1:14,14:28:99:341,0,470
10    91473975    rs11185854    T    C    38.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447580    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
10    91474699    rs74966331    C    CT    807.57    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.55;DB;DP=65;FS=0.0;HRun=8;HaplotypeScore=150.71;IndelType=I;MQ=60.09;MQ0=0;MQRankSum=1.123;QD=12.42;ReadPosRankSum=0.774;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447580    GT:AD:DP:GQ:PL    0/1:35,30:65:99:847,0,737
10    91475098    rs3758384    A    G    76.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.68;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447580    GT:AD:DP:GQ:PL    0/1:3,3:6:95.03:106,0,95
10    91477066    rs3758385    A    G    81.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.32;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:111,0,30
10    91479085    rs980520    G    T    236.15    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9722;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=8.75;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:15,11:27:99:266,0,525
10    91483908    rs7079174    G    C    1391.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.071;MQ=58.12;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    1/1:0,60:62:99:1425,129,0
10    91483910    rs7101125    T    G    517.29    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.806;DB;DP=58;Dels=0.0;FS=4.132;HRun=0;HaplotypeScore=7.071;MQ=57.98;MQ0=0;MQRankSum=1.226;QD=8.92;ReadPosRankSum=0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:22,36:58:99:547,0,720
10    91484049    rs10881637    C    T    72.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.43;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:2,3:5:68.47:102,0,68
10    91484780    rs8181361    G    A    908.91    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.652;QD=12.8;ReadPosRankSum=-2.121;SNPEFF_AMINO_ACID_CHANGE=E622;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91484777_91484915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:37,34:71:99:939,0,1155
10    91485950    rs10881639    A    G    370.96    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.56;DB;DP=22;Dels=0.0;FS=3.183;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.495;QD=16.86;ReadPosRankSum=-1.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:10,12:22:99:401,0,344
10    91489233    rs7895001    G    A    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439656    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
10    91497631    rs1062465    T    A    930.53    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=81;Dels=0.0;FS=2.015;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.274;QD=11.49;ReadPosRankSum=0.792;SNPEFF_AMINO_ACID_CHANGE=D1011E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91497144_91498374;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371728    GT:AD:DP:GQ:PL    0/1:48,33:81:99:961,0,1562
10    91497902    .    C    CTAAAAG    2138.77    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.693;DP=60;FS=5.555;HRun=0;HaplotypeScore=278.2273;IndelType=I;MQ=51.42;MQ0=0;MQRankSum=-5.815;QD=35.65;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=L1062LKV;SNPEFF_CODON_CHANGE=cta/cTAAAAGta;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_10_91497144_91498374;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:40,19:60:99:2178,0,2167
10    91498127    rs1886996    T    C    2384.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=36.68;SNPEFF_AMINO_ACID_CHANGE=C1137R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91497144_91498374;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2417,187,0
10    91498254    rs1886997    A    G    792.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=63;Dels=0.0;FS=3.54;HRun=0;HaplotypeScore=0.8321;MQ=59.7;MQ0=0;MQRankSum=-0.738;QD=12.58;ReadPosRankSum=-0.937;SNPEFF_AMINO_ACID_CHANGE=N1179S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91497144_91498374;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:35,28:63:99:823,0,1167
10    91498318    rs1886998    A    G    772.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.949;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=59.68;MQ0=0;MQRankSum=-0.062;QD=13.32;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=K1200;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91497144_91498374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:29,29:58:99:803,0,1023
10    91498409    rs191037992    C    G    231.84    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.844;DB;DP=35;Dels=0.0;FS=3.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=6.62;ReadPosRankSum=-0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:25,10:35:99:262,0,690
10    91503660    rs1126480    A    G    980.67    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.8;DB;DP=60;Dels=0.0;FS=6.817;HRun=0;HaplotypeScore=0.734;MQ=59.62;MQ0=0;MQRankSum=-0.215;QD=16.34;ReadPosRankSum=0.304;SNPEFF_AMINO_ACID_CHANGE=K1297;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_91503565_91503684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:28,32:60:99:1011,0,887
10    91503750    rs10881648    G    T    628.13    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=59.2;MQ0=0;MQRankSum=-0.436;QD=21.66;ReadPosRankSum=3.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:10,19:29:99:658,0,298
10    91503883    rs10785901    T    C    36.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:2,2:4:66.70:67,0,72
10    91505768    rs12414650    C    T    267.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=22.32;ReadPosRankSum=2.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:4,8:12:99:298,0,101
10    91510982    rs1326201    T    C    1407.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1440,108,0
10    91511423    rs5786882    A    AAAG    268.38    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=40.1829;IndelType=I;MQ=55.96;MQ0=0;MQRankSum=-0.361;QD=29.82;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:4,5:9:99:307,0,173
10    91511459    rs2077946    A    G    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.15;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:75,0,33
10    91518388    rs2026549    A    G    184.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.054;QD=20.55;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:3,6:9:96.55:215,0,97
10    91522310    rs3740037    G    A    148.52    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=18.56;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:3,5:8:97.15:179,0,97
10    91522605    rs3740038    G    C    797.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:830,60,0
10    91522707    rs12767644    C    G    109.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.68;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,135
10    91528370    rs7912458    C    T    376.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394289    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:409,30,0
10    91528384    rs7912464    C    T    125.89    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=13;Dels=0.0;FS=4.15;HRun=3;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=9.68;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394289    GT:AD:DP:GQ:PL    0/1:8,5:13:99:156,0,297
10    91528441    rs3824609    T    C    264.69    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=22;Dels=0.0;FS=6.193;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=12.03;ReadPosRankSum=0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394289    GT:AD:DP:GQ:PL    0/1:13,9:22:99:295,0,437
10    91532432    rs3758389    A    T    205.84    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=9.8;ReadPosRankSum=1.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    0/1:13,8:21:99:236,0,471
10    91532834    rs2900752    T    C    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260753    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    92503476    rs55802807    C    G    588.22    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.054;DB;DP=39;Dels=0.0;FS=8.949;HRun=0;HaplotypeScore=1.9891;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=15.08;ReadPosRankSum=-0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277874    GT:AD:DP:GQ:PL    0/1:20,19:39:99:618,0,691
10    92635211    .    T    TA    159.06    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.298;DP=16;FS=0.0;HRun=8;HaplotypeScore=36.3653;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=9.94;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277882    GT:AD:DP:GQ:PL    0/1:9,7:16:99:198,0,175
10    92638707    rs75192201    C    CAGT    502.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=32.1506;IndelType=I;MQ=52.5;MQ0=0;QD=50.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277882    GT:AD:DP:GQ:PL    1/1:3,5:10:27.09:545,27,0
10    92645687    rs4144422    A    G    244.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.111;QD=13.6;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277882    GT:AD:DP:GQ:PL    0/1:10,8:18:99:275,0,321
10    92654347    rs10881847    C    T    39.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.84;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277882    GT:AD:DP:GQ:PL    0/1:3,2:5:69.19:69,0,111
10    92655338    rs71845991    A    AT    441.77    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.341;DB;DP=34;FS=0.0;HRun=7;HaplotypeScore=71.502;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=0.054;QD=12.99;ReadPosRankSum=-1.855;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480635    GT:AD:DP:GQ:PL    0/1:18,16:34:99:481,0,393
10    92655559    rs10881848    T    A    312.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.52;MQ0=0;MQRankSum=-0.854;QD=14.19;ReadPosRankSum=0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480635    GT:AD:DP:GQ:PL    0/1:11,11:22:99:342,0,389
10    92655569    .    T    TCA    602.75    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=3.508;DP=25;FS=0.0;HRun=0;HaplotypeScore=177.5366;IndelType=I;MQ=56.66;MQ0=0;MQRankSum=0.082;QD=24.11;ReadPosRankSum=0.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480635    GT:AD:DP:GQ:PL    0/1:14,11:25:99:642,0,540
10    92662860    rs4568910    A    G    312.87    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=18.4;ReadPosRankSum=0.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371703    GT:AD:DP:GQ:PL    0/1:7,10:17:99:343,0,231
10    92663108    rs7089472    C    T    320.25    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.655;QD=14.56;ReadPosRankSum=-0.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371703    GT:AD:DP:GQ:PL    0/1:10,12:22:99:350,0,298
10    92672564    rs3939    T    C    584.44    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.224;DB;DP=54;Dels=0.0;FS=1.653;HRun=1;HaplotypeScore=5.8221;MQ=59.22;MQ0=0;MQRankSum=0.343;QD=10.82;ReadPosRankSum=0.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413330    GT:AD:DP:GQ:PL    0/1:32,22:54:99:614,0,1015
10    92675649    rs3839929    GA    G    500.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.325;DB;DP=36;FS=0.0;HRun=4;HaplotypeScore=90.7421;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=13.92;ReadPosRankSum=1.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371697    GT:AD:DP:GQ:PL    0/1:18,18:36:99:540,0,648
10    92678740    rs72003210    AATAAATAAATATATATATATATAT    A    4144.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.634;DB;DP=45;FS=3.34;HRun=0;HaplotypeScore=1045.0191;IndelType=D;MQ=37.32;MQ0=0;MQRankSum=0.211;QD=92.1;ReadPosRankSum=0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371697    GT:AD:DP:GQ:PL    1/1:22,12:45:99:4145,117,0
10    92680929    rs10881855    A    G    295.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_92680758_92681033;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371697    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
10    93220104    rs11186575    C    T    245.94    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=1.391;QD=8.48;ReadPosRankSum=1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298068    GT:AD:DP:GQ:PL    0/1:20,9:29:99:276,0,686
10    93221077    rs7920604    G    A    1433.36    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=1.487;DB;DP=87;Dels=0.0;FS=0.847;HRun=0;HaplotypeScore=1.7552;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=16.48;ReadPosRankSum=0.912;SNPEFF_AMINO_ACID_CHANGE=T158;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_93221011_93221113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298068    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1463,0,1042
10    93221600    rs2421517    C    A    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298068    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    93256191    .    C    G    251.79    HaplotypeScoreFilter13    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.3971;MQ=59.59;MQ0=0;MQRankSum=0.489;QD=13.25;ReadPosRankSum=-0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298068    GT:AD:DP:GQ:PL    0/1:8,11:19:99:282,0,282
10    93256193    rs138762222    GTCTC    G    349.66    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.203;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=130.9676;IndelType=D;MQ=59.59;MQ0=0;MQRankSum=0.053;QD=18.4;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298068    GT:AD:DP:GQ:PL    0/1:10,9:19:99:389,0,576
10    93271982    rs12245101    T    A    735.13    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=0.998;DB;DP=67;Dels=0.0;FS=4.777;HRun=0;HaplotypeScore=0.9159;MQ=59.66;MQ0=0;MQRankSum=-0.019;QD=10.97;ReadPosRankSum=-0.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298068    GT:AD:DP:GQ:PL    0/1:39,28:67:99:765,0,1171
10    93614675    rs72520022    TA    T    115.72    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=15;FS=0.0;HRun=11;HaplotypeScore=96.476;IndelType=D;MQ=55.99;MQ0=0;MQRankSum=0.965;QD=7.71;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNKS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371627    GT:AD:DP:GQ:PL    0/1:7,8:15:99:155,0,144
10    93702405    rs3814640    C    T    291.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.044;QD=29.16;ReadPosRankSum=1.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:1,9:10:27.04:325,27,0
10    93702443    rs3814639    G    A    170.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
10    93713363    rs10748574    A    G    376.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
10    93713405    rs12571564    T    G    1290.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1323,99,0
10    93713758    rs11186768    T    G    599.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:632,45,0
10    93713807    rs12763600    A    G    334    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:367,27,0
10    93716899    rs7894570    G    C    877.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:911,66,0
10    93719087    rs12774665    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    93722199    rs1340421    A    G    301.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:334,27,0
10    93740429    rs2792022    T    C    116.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
10    93753627    rs41287648    C    T    411.96    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=36;Dels=0.0;FS=1.624;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.738;QD=11.44;ReadPosRankSum=0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471217    GT:AD:DP:GQ:PL    0/1:19,17:36:99:442,0,536
10    93754543    rs833384    T    G    246.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:279,21,0
10    93767797    rs1711842    G    A    1771.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1804,135,0
10    93771192    rs2676802    T    A    742.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:775,63,0
10    93773922    rs855562    G    A    952.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:986,72,0
10    93775953    rs833371    G    A    189.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:222,18,0
10    93776240    rs11400019    C    CT    333.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;DB;DP=30;FS=0.0;HRun=13;HaplotypeScore=135.6337;IndelType=I;MQ=56.85;MQ0=0;MQRankSum=-1.054;QD=11.11;ReadPosRankSum=-1.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:14,13:30:12.59:375,13,0
10    93784489    rs66512665    G    GTTTTTTTGTT    3782.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=288.4709;IndelType=I;MQ=34.95;MQ0=0;QD=126.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:11,14:30:84.29:3782,84,0
10    93784870    rs2676818    C    A    198.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
10    93788516    rs10622641    A    ATT    768.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.706;DB;DP=32;FS=0.0;HRun=14;HaplotypeScore=300.6386;IndelType=I;MQ=50.36;MQ0=0;MQRankSum=0.321;QD=24.03;ReadPosRankSum=0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265990    GT:AD:DP:GQ:PL    1/1:11,14:32:68.82:811,69,0
10    93841227    rs2676811    A    G    1384.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=Y559;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_93841077_93841258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394210    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1418,108,0
10    93851714    rs1229578    T    C    626.47    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.102;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=0.418;QD=9.08;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265997    GT:AD:DP:GQ:PL    0/1:44,25:69:99:656,0,1426
10    94070742    rs2798254    T    C    126.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358935    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
10    94238929    rs67967416    T    TA    303.14    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.408;DB;DP=37;FS=0.0;HRun=10;HaplotypeScore=154.5082;IndelType=I;MQ=58.11;MQ0=0;MQRankSum=-0.892;QD=8.19;ReadPosRankSum=0.758;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492362    GT:AD:DP:GQ:PL    0/1:24,13:37:99:342,0,410
10    94264403    rs45505496    C    T    59.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.86;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265986    GT:AD:DP:GQ:PL    0/1:3,3:6:89.17:89,0,107
10    94366347    rs72495746    A    AT    310.92    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.378;DB;DP=40;FS=1.691;HRun=13;HaplotypeScore=140.2473;IndelType=I;MQ=58.81;MQ0=0;MQRankSum=0.763;QD=7.77;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260731    GT:AD:DP:GQ:PL    0/1:23,16:40:99:350,0,297
10    94369023    rs71028829    CAGAGAGAG    C    1566.22    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.136;DB;DP=57;FS=8.869;HRun=0;HaplotypeScore=548.4168;IndelType=D;MQ=53.9;MQ0=0;MQRankSum=1.018;QD=27.48;ReadPosRankSum=1.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260731    GT:AD:DP:GQ:PL    0/1:41,8:57:99:1605,0,297
10    94369054    rs3835294    AGAGAGAGT    A    1259.96    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=3.919;DB;DP=73;FS=8.118;HRun=0;HaplotypeScore=769.2429;IndelType=D;MQ=53.42;MQ0=0;MQRankSum=1.249;QD=17.26;ReadPosRankSum=1.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260731    GT:AD:DP:GQ:PL    0/1:43,30:73:99:1299,0,468
10    94409800    rs6583833    C    T    94.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.54;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260731    GT:AD:DP:GQ:PL    0/1:4,5:9:99:125,0,133
10    94429467    rs7918084    C    T    190.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.18;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.47;MQ0=0;MQRankSum=-0.591;QD=7.07;ReadPosRankSum=0.849;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=EIF2S2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428356    GT:AD:DP:GQ:PL    0/1:18,9:27:99:221,0,573
10    94429511    rs7903302    T    C    146.41    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=-0.423;QD=6.1;ReadPosRankSum=-0.141;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=EIF2S2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428356    GT:AD:DP:GQ:PL    0/1:17,7:24:99:176,0,444
10    94594416    rs112281490    A    AT    239    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=23;FS=3.757;HRun=11;HaplotypeScore=101.0544;IndelType=I;MQ=58.99;MQ0=0;MQRankSum=0.784;QD=10.39;ReadPosRankSum=2.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371547    GT:AD:DP:GQ:PL    0/1:11,12:23:99:278,0,128
10    94594565    rs2490741    G    A    1761.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.09;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=V24I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_94594467_94594581;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371552    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1795,132,0
10    94695555    rs1326330    G    A    376.54    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=26;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.09;QD=14.48;ReadPosRankSum=-1.661;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260762    GT:AD:DP:GQ:PL    0/1:11,15:26:99:407,0,387
10    94695617    rs1326331    C    T    466.90    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.491;DB;DP=32;Dels=0.0;FS=3.526;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=14.59;ReadPosRankSum=1.095;SNPEFF_AMINO_ACID_CHANGE=T391I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_94695571_94695642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371552    GT:AD:DP:GQ:PL    0/1:15,17:32:99:497,0,451
10    94700749    rs4517429    G    C    39.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260762    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:69,0,71
10    94816807    rs77700422    G    GA    1337.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=3;HaplotypeScore=65.424;IndelType=I;MQ=61.53;MQ0=0;QD=38.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260762    GT:AD:DP:GQ:PL    1/1:2,33:35:99:1380,99,0
10    94822686    rs55843714    C    T    1031.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=T213;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_94822477_94822752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP26C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285949    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1065,84,0
10    94822895    rs12263200    G    T    115.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260762    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:148,12,0
10    94824488    rs4485042    T    A    116.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP26C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285949    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
10    95043861    rs141047198    TC    T    376.70    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=5.216;DB;DP=42;FS=3.553;HRun=2;HaplotypeScore=172.9803;IndelType=D;MQ=49.96;MQ0=0;MQRankSum=-4.336;QD=8.76;ReadPosRankSum=0.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-624L12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394133    GT:AD:DP:GQ:PL    0/1:28,15:42:99:416,0,1110
10    95043935    rs2797567    G    A    307.26    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=50;Dels=0.0;FS=1.272;HRun=0;HaplotypeScore=0.7887;MQ=54.35;MQ0=0;MQRankSum=-3.229;QD=6.15;ReadPosRankSum=0.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-624L12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394133    GT:AD:DP:GQ:PL    0/1:37,13:50:99:337,0,1195
10    95044055    rs2797568    C    T    919.08    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.715;DB;DP=97;Dels=0.0;FS=1.85;HRun=0;HaplotypeScore=2.8528;MQ=49.52;MQ0=0;MQRankSum=-6.62;QD=9.48;ReadPosRankSum=-1.631;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-624L12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394133    GT:AD:DP:GQ:PL    0/1:54,43:97:99:949,0,1566
10    95044091    rs55787340    A    G    580.29    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.561;DB;DP=90;Dels=0.0;FS=3.474;HRun=0;HaplotypeScore=2.8566;MQ=50.95;MQ0=0;MQRankSum=-6.359;QD=6.45;ReadPosRankSum=-0.288;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-624L12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394133    GT:AD:DP:GQ:PL    0/1:57,31:90:99:610,0,1734
10    95044118    rs11595234    C    T    2135.47    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.685;DB;DP=99;Dels=0.0;FS=11.363;HRun=1;HaplotypeScore=1.5741;MQ=53.55;MQ0=0;MQRankSum=5.024;QD=21.57;ReadPosRankSum=0.498;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-624L12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394133    GT:AD:DP:GQ:PL    0/1:32,67:99:99:2165,0,739
10    95044356    rs2761303    T    C    593.55    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.734;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.59;QD=17.46;ReadPosRankSum=1.457;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-624L12.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394133    GT:AD:DP:GQ:PL    0/1:15,19:34:99:624,0,524
10    95070037    rs2761286    A    G    268.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:301,24,0
10    95070076    rs117078251    C    G    61    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=10.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.2;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:2,3:5:67.95:91,0,68
10    95070080    rs2797581    C    T    210.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
10    95070526    rs787661    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    95072536    rs787665    C    G    173.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
10    95072906    rs787666    T    C    4716.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=37.14;SNPEFF_AMINO_ACID_CHANGE=R1907;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95072777_95072967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4716,352,0
10    95073046    rs787667    A    G    471.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.305;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.248;QD=18.86;ReadPosRankSum=-1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:10,15:25:99:501,0,333
10    95079922    rs78775273    T    C    96.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=13.79;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474161    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,101
10    95082882    rs34048939    G    A    1864.90    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=3.193;DB;DP=168;Dels=0.0;FS=1.242;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.346;QD=11.1;ReadPosRankSum=-0.172;SNPEFF_AMINO_ACID_CHANGE=D1790;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95082835_95082930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:98,70:168:99:1895,0,2713
10    95082894    rs35527060    G    A    1860.76    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=2.611;DB;DP=164;Dels=0.0;FS=3.642;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=0.613;QD=11.35;ReadPosRankSum=-0.58;SNPEFF_AMINO_ACID_CHANGE=D1786;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95082835_95082930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:94,70:164:99:1891,0,2577
10    95083204    rs72415578    ATTTC    A    212.64    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=29.5955;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=35.44;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485212    GT:AD:DP:GQ:PL    0/1:1,5:6:59.97:252,0,60
10    95095600    rs787689    G    C    864.60    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=1.593;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7803;MQ=60.0;MQ0=0;MQRankSum=-0.979;QD=18.8;ReadPosRankSum=0.319;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475358    GT:AD:DP:GQ:PL    0/1:17,29:46:99:895,0,550
10    95097537    rs1614065    T    C    719.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.081;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4099;MQ=59.59;MQ0=0;MQRankSum=0.66;QD=16.0;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:18,27:45:99:750,0,589
10    95099822    rs2761330    G    C    153.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.295;QD=10.2;ReadPosRankSum=0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:9,6:15:99:183,0,309
10    95099849    rs2761329    G    A    296.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.761;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.318;QD=12.34;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:12,12:24:99:326,0,406
10    95111716    rs787624    C    A    130.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=14.51;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:4,5:9:99:161,0,115
10    95113491    rs787625    A    G    298.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.233;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=12.96;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:11,11:23:99:328,0,399
10    95115339    rs5787054    A    AAAAAT    1237.51    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.446;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=179.8374;IndelType=I;MQ=57.7;MQ0=0;MQRankSum=0.988;QD=29.46;ReadPosRankSum=-1.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:28,10:42:99:1277,0,869
10    95121135    rs36018039    CCA    C    375.43    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=4.133;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=74.4196;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=15.02;ReadPosRankSum=-0.804;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:15,10:25:99:414,0,829
10    95132905    rs787647    C    T    509.91    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=3.653;DB;DP=29;Dels=0.0;FS=3.032;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.642;QD=17.58;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:12,17:29:99:540,0,333
10    95152624    rs788084    T    C    866.53    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.746;DB;DP=50;Dels=0.0;FS=3.323;HRun=0;HaplotypeScore=0.9832;MQ=59.07;MQ0=0;MQRankSum=0.956;QD=17.33;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371489    GT:AD:DP:GQ:PL    0/1:22,28:50:99:897,0,604
10    95156868    rs1474352    G    A    300.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371489    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:334,24,0
10    95156872    rs1474353    A    G    289.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371489    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:322,27,0
10    95159025    rs701862    T    G    83.82    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.76;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:1,4:5:26.72:114,0,27
10    95162248    rs701863    C    G    741.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:774,60,0
10    95162496    rs701875    A    T    218.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=61.19;MQ0=0;QD=24.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:251,24,0
10    95162525    rs138445972    TC    T    447.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=70.2442;IndelType=D;MQ=60.67;MQ0=0;QD=27.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,16:16:48.11:489,48,0
10    95164040    rs788088    A    G    297.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
10    95164206    rs701864    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    95211586    rs701866    G    A    388.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:421,33,0
10    95212070    rs2985079    A    G    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.33;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,148
10    95216590    rs17481945    C    T    507.12    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.682;QD=11.79;ReadPosRankSum=-1.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:24,19:43:99:537,0,710
10    95216623    rs701882    A    G    840.68    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.729;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.476;QD=14.49;ReadPosRankSum=-0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:24,34:58:99:871,0,798
10    95216837    rs72819040    T    A    304.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.12;QD=20.27;ReadPosRankSum=2.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:6,9:15:99:334,0,175
10    95216890    rs10882235    A    T    83.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:113,0,29
10    95241986    rs882873    C    A    314.60    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.379;DB;DP=30;Dels=0.0;FS=1.69;HRun=3;HaplotypeScore=1.782;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=10.49;ReadPosRankSum=-1.506;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    0/1:16,14:30:99:345,0,369
10    95241999    rs947597    A    C    694.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=26.7;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MYOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358334    GT:AD:DP:GQ:PL    1/1:0,26:26:63.15:727,63,0
10    95259979    rs3740370    C    G    2146.62    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=2.972;DB;DP=134;Dels=0.0;FS=8.143;HRun=0;HaplotypeScore=1.9265;MQ=59.66;MQ0=0;MQRankSum=0.105;QD=16.02;ReadPosRankSum=-0.51;SNPEFF_AMINO_ACID_CHANGE=H57Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95259797_95259991;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358339    GT:AD:DP:GQ:PL    0/1:69,65:134:99:2177,0,2118
10    95262981    rs7080916    A    G    1812.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=T99A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95262870_95263145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358339    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1845,144,0
10    95276673    rs4919224    G    A    606.42    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=4.018;DB;DP=42;Dels=0.0;FS=6.222;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.819;QD=14.44;ReadPosRankSum=1.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358339    GT:AD:DP:GQ:PL    0/1:23,19:42:99:636,0,642
10    95278829    rs2280605    A    G    1405.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358339    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1439,108,0
10    95278841    rs2280606    C    T    1066.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.758;QD=33.34;ReadPosRankSum=1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358339    GT:AD:DP:GQ:PL    1/1:1,31:32:71.60:1100,72,0
10    95279506    rs2293277    A    T    2537.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DB;DP=73;Dels=0.0;FS=3.133;HRun=1;HaplotypeScore=0.7887;MQ=59.68;MQ0=0;MQRankSum=1.685;QD=34.76;ReadPosRankSum=1.163;SNPEFF_AMINO_ACID_CHANGE=H378L;SNPEFF_CODON_CHANGE=cAt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95279439_95279537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358339    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2571,190,0
10    95279653    rs7068719    A    G    973.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358339    GT:AD:DP:GQ:PL    1/1:0,29:29:75.22:1006,75,0
10    95279771    rs3817482    C    T    184.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358339    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:217,18,0
10    95287643    rs67685992    G    GA    482.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.822;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=79.1863;IndelType=I;MQ=61.47;MQ0=0;MQRankSum=-0.639;QD=22.99;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371485    GT:AD:DP:GQ:PL    1/1:2,19:21:33.87:525,34,0
10    95368369    rs10882286    A    G    1279.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1312,102,0
10    95380790    rs1223306    G    A    1325.13    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.253;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1835;MQ=59.38;MQ0=0;MQRankSum=0.021;QD=11.83;ReadPosRankSum=1.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:62,49:112:99:1355,0,2120
10    95381773    rs701865    T    A    638.21    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.511;DB;DP=53;Dels=0.0;FS=1.076;HRun=1;HaplotypeScore=0.9734;MQ=59.56;MQ0=0;MQRankSum=-0.476;QD=12.04;ReadPosRankSum=-0.009;SNPEFF_AMINO_ACID_CHANGE=S270T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95381689_95381829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:30,23:53:99:668,0,1003
10    95386268    rs2765828    T    C    70.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.03;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,140
10    95388914    rs2857300    A    G    134.78    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=14.98;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:4,5:9:99:165,0,129
10    95389041    rs714550    G    A    613.27    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=37;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.628;QD=16.57;ReadPosRankSum=2.233;SNPEFF_AMINO_ACID_CHANGE=A366;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95389015_95389062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:18,19:37:99:643,0,554
10    95389083    rs714549    A    G    652.18    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=2.178;DB;DP=31;Dels=0.0;FS=1.661;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.11;QD=21.04;ReadPosRankSum=-1.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:10,21:31:99:682,0,272
10    95389124    rs714551    G    A    250.04    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.439;QD=14.71;ReadPosRankSum=2.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:7,10:17:99:280,0,205
10    95389249    rs1409335    G    A    58.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3404;MQ=49.96;MQ0=0;MQRankSum=0.358;QD=11.7;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:2,3:5:56.19:89,0,56
10    95389251    rs1409334    T    A    67.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3404;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=16.9;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:98,0,21
10    95394348    rs2785144    T    C    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    95394455    rs1856563    T    C    518.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:551,42,0
10    95395247    rs616522    A    G    612.62    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.628;DB;DP=41;Dels=0.0;FS=4.886;HRun=0;HaplotypeScore=0.6651;MQ=59.44;MQ0=0;MQRankSum=0.144;QD=14.94;ReadPosRankSum=1.948;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:19,22:41:99:643,0,599
10    95395364    rs3737228    C    G    1129.04    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.415;DB;DP=75;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=15.05;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=T460;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95395254_95395397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:31,44:75:99:1159,0,1003
10    95400054    rs2275227    C    G    483.90    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.444;DB;DP=22;Dels=0.0;FS=2.205;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.171;QD=22.0;ReadPosRankSum=-0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:8,14:22:99:514,0,266
10    95400510    rs12780304    T    C    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    95405665    rs138672515    CTA    C    335.53    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=53.146;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.54;QD=20.97;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:7,9:16:99:375,0,193
10    95405814    rs1409332    C    A    230.01    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.318;DB;DP=24;Dels=0.0;FS=3.925;HRun=3;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.093;QD=9.58;ReadPosRankSum=0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:13,10:24:99:260,0,373
10    95422079    rs10882297    T    C    38.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371447    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:68,0,26
10    95431509    rs7904844    T    C    75.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371426    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:107,9,0
10    95431535    rs913045    C    T    90.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371426    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
10    95432050    rs41290228    G    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394100    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    95432968    rs1572773    T    C    1276.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394100    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1310,105,0
10    95433124    rs1326214    A    G    3772.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.199;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.81;MQ0=0;MQRankSum=0.284;QD=30.43;ReadPosRankSum=-1.533;SNPEFF_AMINO_ACID_CHANGE=L279S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95433070_95433133;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371426    GT:AD:DP:GQ:PL    1/1:1,122:124:99:3773,244,0
10    95441272    rs11187583    G    A    475.59    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.469;DB;DP=55;Dels=0.0;FS=2.73;HRun=2;HaplotypeScore=0.7887;MQ=59.66;MQ0=0;MQRankSum=-0.593;QD=8.65;ReadPosRankSum=-0.469;SNPEFF_AMINO_ACID_CHANGE=S251F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95441237_95441355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359204    GT:AD:DP:GQ:PL    0/1:36,19:55:99:506,0,1132
10    95443644    rs11187585    C    T    137.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.27;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472153    GT:AD:DP:GQ:PL    0/1:4,5:9:99:167,0,132
10    95443688    rs8181435    C    G    338.89    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=14.73;ReadPosRankSum=0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472153    GT:AD:DP:GQ:PL    0/1:11,12:23:99:369,0,389
10    95444905    rs79118451    A    G    457.42    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.137;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.027;QD=18.3;ReadPosRankSum=0.575;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482719    GT:AD:DP:GQ:PL    0/1:11,14:25:99:487,0,367
10    95444931    rs767701    T    G    587.14    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.848;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.995;MQ=59.46;MQ0=0;MQRankSum=1.891;QD=13.65;ReadPosRankSum=-0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482719    GT:AD:DP:GQ:PL    0/1:20,23:43:99:617,0,690
10    95454449    rs11187593    C    T    194.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.74;MQ0=0;MQRankSum=-1.892;QD=13.89;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359204    GT:AD:DP:GQ:PL    0/1:6,8:14:99:224,0,178
10    95454681    rs2275438    G    C    2527.50    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=160;Dels=0.0;FS=1.467;HRun=0;HaplotypeScore=2.6191;MQ=57.87;MQ0=0;MQRankSum=0.69;QD=15.8;ReadPosRankSum=0.609;SNPEFF_AMINO_ACID_CHANGE=T78R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95454618_95454694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359204    GT:AD:DP:GQ:PL    0/1:74,86:160:99:2557,0,2198
10    95454768    rs67896534    TA    T    395.57    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=4.292;DB;DP=44;FS=0.0;HRun=8;HaplotypeScore=129.9474;IndelType=D;MQ=60.25;MQ0=0;MQRankSum=-0.584;QD=8.99;ReadPosRankSum=0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359204    GT:AD:DP:GQ:PL    0/1:25,19:44:99:435,0,574
10    95457992    rs11187596    A    G    494.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=45;Dels=0.0;FS=2.661;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.514;QD=10.98;ReadPosRankSum=0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359204    GT:AD:DP:GQ:PL    0/1:25,20:45:99:524,0,852
10    95458141    rs11187597    A    G    578.89    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.01;DB;DP=49;Dels=0.0;FS=4.124;HRun=0;HaplotypeScore=1.9953;MQ=59.53;MQ0=0;MQRankSum=-0.25;QD=11.81;ReadPosRankSum=-1.43;SNPEFF_AMINO_ACID_CHANGE=D30;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95458058_95458153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359204    GT:AD:DP:GQ:PL    0/1:25,24:49:99:609,0,733
10    95459698    rs2275441    G    C    125.13    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=25.03;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359204    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:155,0,28
10    95459817    rs726817    C    T    1504.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=R16H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95459787_95459863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRA10AC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359204    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1537,117,0
10    95549671    rs4375374    A    G    126.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371413    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
10    95549836    rs67962422    C    CTT    708.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DB;DP=37;FS=0.0;HRun=15;HaplotypeScore=274.4824;IndelType=I;MQ=51.97;MQ0=0;MQRankSum=0.039;QD=19.16;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371413    GT:AD:DP:GQ:PL    1/1:8,13:37:43.47:751,43,0
10    95552653    rs1111820    T    C    3488.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=F171;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95552500_95552669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542308    GT:AD:DP:GQ:PL    1/1:0,116:117:99:3489,274,0
10    95658258    rs11187724    C    G    790.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371408    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:823,60,0
10    95718474    rs829225    A    G    1003.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.14;MQ0=0;QD=37.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494992    GT:AD:DP:GQ:PL    1/1:0,27:27:81.23:1037,81,0
10    95720459    rs151257096    T    C    1390.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.051;DB;DP=94;Dels=0.0;FS=3.829;HRun=1;HaplotypeScore=0.9789;MQ=58.93;MQ0=0;MQRankSum=-0.083;QD=14.79;ReadPosRankSum=0.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494992    GT:AD:DP:GQ:PL    0/1:47,47:94:99:1421,0,1361
10    95721367    rs1977861    C    G    115.68    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.061;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.307;QD=5.78;ReadPosRankSum=1.623;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIPSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480546    GT:AD:DP:GQ:PL    0/1:13,6:20:99:146,0,441
10    95790669    rs10882386    G    A    202.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.524;QD=14.44;ReadPosRankSum=0.068;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_95790440_95792009;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:7,7:14:99:232,0,249
10    95791613    rs17109671    T    C    874.28    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=1.526;DB;DP=56;Dels=0.0;FS=1.168;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.885;QD=15.61;ReadPosRankSum=1.138;SNPEFF_AMINO_ACID_CHANGE=C270;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95790440_95792009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:27,29:56:99:904,0,776
10    95791763    rs17109674    G    A    1168.29    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=81;Dels=0.0;FS=3.094;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.439;QD=14.42;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=E320;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95790440_95792009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:36,44:81:99:1198,0,1134
10    95931087    rs17417407    G    T    1095.68    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.905;DB;DP=115;Dels=0.0;FS=1.605;HRun=0;HaplotypeScore=1.9532;MQ=59.4;MQ0=0;MQRankSum=0.524;QD=9.53;ReadPosRankSum=-0.548;SNPEFF_AMINO_ACID_CHANGE=R240L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_95930937_95931253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371375    GT:AD:DP:GQ:PL    0/1:69,46:115:99:1126,0,2083
10    96013705    rs9419788    G    A    42.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.08;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:1,2:3:18.64:72,0,19
10    96013824    rs1408820    C    T    80.86    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.588;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=5.39;ReadPosRankSum=1.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:11,4:15:99:111,0,410
10    96014622    rs10786156    C    G    2824.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.706;DB;DP=250;DS;Dels=0.0;FS=2.338;HRun=0;HaplotypeScore=3.3912;MQ=59.63;MQ0=0;MQRankSum=-0.329;QD=11.3;ReadPosRankSum=-0.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:150,100:250:99:2854,0,4562
10    96018510    rs4918182    A    T    345.95    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=31;Dels=0.0;FS=9.949;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=11.16;ReadPosRankSum=-0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:19,12:31:99:376,0,614
10    96019042    .    A    AT    51.45    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DP=18;FS=0.0;HRun=16;HaplotypeScore=130.0706;IndelType=I;MQ=54.65;MQ0=0;MQRankSum=1.453;QD=2.86;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:12,6:18:43.64:90,0,44
10    96030458    rs1969867    G    T    38.94    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=0.227;QD=2.43;ReadPosRankSum=-0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:11,5:16:68.93:69,0,380
10    96039597    rs2274224    G    C    591.22    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.076;DB;DP=56;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=5.6713;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=10.56;ReadPosRankSum=-1.12;SNPEFF_AMINO_ACID_CHANGE=R1267P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_96039539_96039668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371375    GT:AD:DP:GQ:PL    0/1:29,27:56:99:621,0,727
10    96039708    rs2274225    C    T    391.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.872;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.345;QD=14.0;ReadPosRankSum=1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    0/1:14,14:28:99:422,0,426
10    96044734    rs3736901    C    A    1223.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260766    GT:AD:DP:GQ:PL    1/1:0,36:36:93.31:1256,93,0
10    96076495    rs942676    C    G    1397.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.77;SNPEFF_AMINO_ACID_CHANGE=V1800;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_96076304_96076513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371375    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1431,105,0
10    96201615    rs10882455    A    G    904.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225235    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:937,69,0
10    96201839    rs10584329    CT    C    35.95    QDFilter2    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=33;FS=0.0;HRun=17;HaplotypeScore=254.5212;IndelType=D;MQ=53.1;MQ0=0;MQRankSum=-1.67;QD=1.09;ReadPosRankSum=1.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225235    GT:AD:DP:GQ:PL    0/1:24,8:33:74.98:75,0,125
10    96271298    rs2860761    A    C    2129.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225235    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2163,163,0
10    96314104    rs11188020    G    A    782.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239026    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:815,60,0
10    96348254    rs11188036    G    A    342.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239026    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:376,30,0
10    96466824    rs7904929    C    T    168.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP2C18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285979    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
10    96480153    .    GA    G    262.21    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=4.375;DP=29;FS=4.058;HRun=4;HaplotypeScore=105.4431;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.753;QD=9.04;ReadPosRankSum=-1.27;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_10_96480153_96480294;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP2C18;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000285979    GT:AD:DP:GQ:PL    0/1:18,11:29:99:301,0,630
10    96495232    rs2860840    C    T    1970.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.067;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9997;MQ=59.24;MQ0=0;MQRankSum=1.172;QD=32.31;ReadPosRankSum=1.087;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP2C18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476630    GT:AD:DP:GQ:PL    1/1:2,59:61:83.12:2004,83,0
10    96609568    rs4917623    T    C    835.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYP2C19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371321    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:868,63,0
10    96829430    rs7909236    G    T    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP2C8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371270    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
10    96954298    rs591157    A    G    1184.77    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=114;Dels=0.0;FS=1.573;HRun=1;HaplotypeScore=0.9665;MQ=59.55;MQ0=0;MQRankSum=-0.801;QD=10.39;ReadPosRankSum=0.485;SNPEFF_AMINO_ACID_CHANGE=E19G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_96954222_96954434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:64,49:114:99:1215,0,2098
10    96954360    rs11188225    T    A    1512.46    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.269;DB;DP=112;Dels=0.0;FS=3.869;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.692;QD=13.5;ReadPosRankSum=-0.547;SNPEFF_AMINO_ACID_CHANGE=C40S;SNPEFF_CODON_CHANGE=Tgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_96954222_96954434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:61,50:112:99:1542,0,1774
10    96954473    rs592041    A    T    726.35    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.57;MQ0=0;MQRankSum=0.71;QD=14.82;ReadPosRankSum=-0.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:24,25:49:99:756,0,793
10    96954479    rs592055    G    A    766.19    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.034;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=-0.99;QD=17.03;ReadPosRankSum=-0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:21,24:45:99:796,0,638
10    96954511    rs681838    T    A    1135.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    1/1:0,31:31:90.24:1169,90,0
10    96966954    rs67493277    GT    G    902.41    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=5.758;DB;DP=77;FS=0.98;HRun=7;HaplotypeScore=221.1772;IndelType=D;MQ=59.72;MQ0=0;MQRankSum=-0.138;QD=11.72;ReadPosRankSum=-0.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:37,40:77:99:941,0,1100
10    96967298    rs815250    T    G    31.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.29;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:3,2:5:61.44:61,0,106
10    96970361    rs16872    A    C    427.35    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.489;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.003;QD=16.44;ReadPosRankSum=1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:12,14:26:99:457,0,385
10    96971504    rs12262878    T    C    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.79;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,108
10    96971638    rs75252129    G    A    122.91    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.597;DB;DP=34;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.505;QD=3.61;ReadPosRankSum=-0.707;SNPEFF_AMINO_ACID_CHANGE=R253;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_96971635_96971791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:24,10:34:99:153,0,752
10    96974518    rs595478    A    T    255.16    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.654;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.39;MQ0=0;MQRankSum=0.36;QD=8.8;ReadPosRankSum=-0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:19,10:29:99:285,0,619
10    96974552    rs595420    C    T    494.94    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.51;MQ0=0;MQRankSum=-0.269;QD=10.53;ReadPosRankSum=-0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:30,17:47:99:525,0,934
10    96974803    rs594448    A    G    834.91    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.574;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=0.244;QD=14.65;ReadPosRankSum=0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:28,29:57:99:865,0,909
10    96979504    rs11188228    T    C    121.25    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=16;Dels=0.0;FS=5.051;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.453;QD=7.58;ReadPosRankSum=-1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:11,5:16:99:151,0,385
10    96979775    rs11188229    C    G    696.60    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.172;DB;DP=57;Dels=0.0;FS=3.377;HRun=0;HaplotypeScore=2.9828;MQ=59.6;MQ0=0;MQRankSum=0.893;QD=12.22;ReadPosRankSum=-0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:35,22:57:99:727,0,1054
10    96979830    rs628102    C    G    429.76    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.79;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=15.92;ReadPosRankSum=-0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341686    GT:AD:DP:GQ:PL    0/1:14,13:27:99:460,0,469
10    96985198    rs489807    G    A    428.13    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.708;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.385;QD=9.73;ReadPosRankSum=-1.726;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404473    GT:AD:DP:GQ:PL    0/1:27,17:44:99:458,0,751
10    96988708    rs11188233    A    C    85.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=9.47;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327739    GT:AD:DP:GQ:PL    0/1:5,4:9:99:115,0,168
10    96988739    rs11188234    T    G    60.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.07;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327739    GT:AD:DP:GQ:PL    0/1:3,3:6:90.43:90,0,110
10    96997589    rs1049961    A    G    69.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=9.87;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477757    GT:AD:DP:GQ:PL    0/1:3,4:7:99:99,0,107
10    96997670    rs1049921    A    G    226.46    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.164;DB;DP=19;Dels=0.0;FS=1.871;HRun=1;HaplotypeScore=0.9332;MQ=58.78;MQ0=0;MQRankSum=0.694;QD=11.92;ReadPosRankSum=0.857;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477757    GT:AD:DP:GQ:PL    0/1:10,9:19:99:256,0,255
10    96997820    rs1049814    A    G    115.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.271;QD=8.24;ReadPosRankSum=1.092;SNPEFF_AMINO_ACID_CHANGE=Y284;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_96997329_96997868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329399    GT:AD:DP:GQ:PL    0/1:8,6:14:99:145,0,249
10    96998193    rs12771349    C    T    177.44    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=25.35;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490391    GT:AD:DP:GQ:PL    0/1:1,6:7:21.58:207,0,22
10    96998519    rs2860998    T    C    109.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.74;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329399    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,134
10    97006803    rs71486754    CCTCT    C    425.60    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=3.476;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=126.6795;IndelType=D;MQ=58.15;MQ0=0;MQRankSum=-0.579;QD=16.37;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329399    GT:AD:DP:GQ:PL    0/1:14,10:26:99:465,0,841
10    97023541    rs4918908    C    A    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493949    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,108
10    97023552    rs4917682    G    A    209.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493949    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
10    97023630    rs2296961    T    C    168.26    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=12.94;ReadPosRankSum=-0.811;SNPEFF_AMINO_ACID_CHANGE=N175S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97023621_97023820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329399    GT:AD:DP:GQ:PL    0/1:6,7:13:99:198,0,205
10    97023895    rs2296962    C    T    126.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329399    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
10    97023948    rs2296963    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329399    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    97028413    rs3737015    A    T    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329399    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
10    97106029    rs726175    C    T    80.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.11;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277982    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:110,0,31
10    97106165    rs726176    T    C    599.75    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=1.35;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=58.05;MQ0=0;MQRankSum=0.362;QD=16.66;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=L459;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97106163_97106209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371241    GT:AD:DP:GQ:PL    0/1:13,23:36:99:630,0,403
10    97110879    rs6583995    C    T    138.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.098;QD=13.82;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-476E15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371228    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,180
10    97127264    rs6583997    T    C    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277982    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:67,0,32
10    97127462    rs6583998    C    A    143.39    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.666;QD=7.97;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277982    GT:AD:DP:GQ:PL    0/1:10,8:18:99:173,0,261
10    97137105    rs1536556    A    G    1432.64    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.212;DB;DP=110;Dels=0.0;FS=0.713;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=1.476;QD=13.02;ReadPosRankSum=0.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472854    GT:AD:DP:GQ:PL    0/1:58,52:110:99:1463,0,1659
10    97141523    rs2274490    G    A    2768.94    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.665;DB;DP=225;Dels=0.0;FS=8.809;HRun=0;HaplotypeScore=3.6774;MQ=59.69;MQ0=0;MQRankSum=1.576;QD=12.31;ReadPosRankSum=-1.361;SNPEFF_AMINO_ACID_CHANGE=D314;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97141442_97141556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371241    GT:AD:DP:GQ:PL    0/1:125,98:225:99:2799,0,3600
10    97156908    rs17110707    T    C    897.96    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=2.381;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.282;QD=11.37;ReadPosRankSum=-0.777;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277982    GT:AD:DP:GQ:PL    0/1:45,34:79:99:928,0,1348
10    97165811    rs3818540    G    A    218.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=15.58;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277982    GT:AD:DP:GQ:PL    0/1:7,7:14:99:248,0,209
10    97174164    rs3818539    A    G    491.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.446;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.842;QD=13.64;ReadPosRankSum=-0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474353    GT:AD:DP:GQ:PL    0/1:18,18:36:99:521,0,504
10    97181855    rs17849163    T    C    411.08    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.258;QD=13.26;ReadPosRankSum=0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277982    GT:AD:DP:GQ:PL    0/1:17,14:31:99:441,0,507
10    97192086    .    ACACACC    A    767.02    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DP=26;FS=0.0;HRun=0;HaplotypeScore=251.7026;IndelType=D;MQ=39.7;MQ0=0;MQRankSum=-1.133;QD=29.5;ReadPosRankSum=0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277982    GT:AD:DP:GQ:PL    0/1:11,14:26:99:806,0,498
10    97192324    rs943542    A    G    1055.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.81;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=L29P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97192205_97192333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371239    GT:AD:DP:GQ:PL    1/1:0,33:33:87.26:1089,87,0
10    97197066    rs73321246    C    T    72.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.09;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277982    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,106
10    97366364    rs1053905    C    T    278.79    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.798;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=9.61;ReadPosRankSum=-0.743;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    0/1:19,10:29:99:309,0,637
10    97366746    rs7099284    C    T    565.83    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=5.094;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.284;QD=12.86;ReadPosRankSum=-0.829;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    0/1:25,19:44:99:596,0,760
10    97366817    rs11592809    T    G    179.71    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.82;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    0/1:7,6:13:99:210,0,236
10    97366834    rs496426    A    G    70.54    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=14.11;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:101,0,30
10    97369939    rs10882640    C    T    641.64    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=47;Dels=0.0;FS=1.266;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.714;QD=13.65;ReadPosRankSum=-0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    0/1:22,25:47:99:672,0,779
10    97370197    rs943342    A    G    56.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
10    97370243    rs943343    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
10    97370843    rs2296689    T    C    70.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.83;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,178
10    97370942    rs2296690    G    C    198.22    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.738;QD=7.08;ReadPosRankSum=-0.787;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485428    GT:AD:DP:GQ:PL    0/1:19,9:28:99:228,0,647
10    97371317    rs11188399    A    G    261.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.56;QD=11.87;ReadPosRankSum=1.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371221    GT:AD:DP:GQ:PL    0/1:12,10:22:99:291,0,420
10    97373966    rs2296692    A    C    849.54    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.725;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.204;QD=13.7;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371221    GT:AD:DP:GQ:PL    0/1:32,30:62:99:880,0,1066
10    97380662    rs507017    G    A    75.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.49;MQ0=0;MQRankSum=-1.231;QD=15.08;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489386    GT:AD:DP:GQ:PL    0/1:2,3:5:58.88:105,0,59
10    97385014    rs57670810    T    C    569.64    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.662;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=14.61;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489386    GT:AD:DP:GQ:PL    0/1:21,18:39:99:600,0,750
10    97385242    rs10509688    A    G    1008.38    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.474;DB;DP=63;Dels=0.0;FS=3.08;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.382;QD=16.01;ReadPosRankSum=0.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371221    GT:AD:DP:GQ:PL    0/1:32,31:63:99:1038,0,1133
10    97387952    rs12414904    C    G    282.31    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.01;QD=16.61;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371221    GT:AD:DP:GQ:PL    0/1:8,9:17:99:312,0,260
10    97388162    rs2275272    G    A    1196.73    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.987;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-0.694;QD=13.45;ReadPosRankSum=-0.185;SNPEFF_AMINO_ACID_CHANGE=T297I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97388125_97388249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371221    GT:AD:DP:GQ:PL    0/1:47,42:89:99:1227,0,1526
10    97388326    .    A    G    64.71    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7366;MQ=53.36;MQ0=0;MQRankSum=0.278;QD=5.88;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371221    GT:AD:DP:GQ:PL    0/1:7,4:11:94.70:95,0,213
10    97392969    rs3750701    G    A    74.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=12.36;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483788    GT:AD:DP:GQ:PL    0/1:3,3:6:62.44:104,0,62
10    97392993    rs3750700    T    C    57.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=11.46;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483788    GT:AD:DP:GQ:PL    0/1:2,3:5:30.97:87,0,31
10    97393475    rs11188409    C    T    187.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.426;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.259;QD=15.63;ReadPosRankSum=1.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483788    GT:AD:DP:GQ:PL    0/1:6,6:12:99:218,0,124
10    97397227    rs2275273    T    C    221.42    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=17;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=13.02;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371221    GT:AD:DP:GQ:PL    0/1:9,8:17:99:251,0,266
10    97412921    rs9787589    T    G    459.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371221    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:492,39,0
10    97440097    rs10610157    TCA    T    714.99    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=5.509;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=498.8314;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=-5.029;QD=17.02;ReadPosRankSum=0.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371209    GT:AD:DP:GQ:PL    0/1:20,22:42:99:754,0,954
10    97440159    rs11595248    G    A    1370.18    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.723;DB;DP=87;Dels=0.0;FS=4.703;HRun=0;HaplotypeScore=0.9734;MQ=55.95;MQ0=0;MQRankSum=3.442;QD=15.75;ReadPosRankSum=1.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371209    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1400,0,1192
10    97440394    rs12784530    T    C    682.25    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.625;DB;DP=49;Dels=0.0;FS=1.628;HRun=0;HaplotypeScore=0.8321;MQ=57.12;MQ0=0;MQRankSum=0.631;QD=13.92;ReadPosRankSum=0.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371209    GT:AD:DP:GQ:PL    0/1:22,27:49:99:712,0,696
10    97440493    rs143448527    GA    G    83.75    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=70.4508;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=-1.246;QD=6.44;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371209    GT:AD:DP:GQ:PL    0/1:8,5:13:99:123,0,282
10    97446206    rs2297788    G    A    351.48    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.987;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=11.72;ReadPosRankSum=-1.995;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497399    GT:AD:DP:GQ:PL    0/1:16,14:30:99:381,0,522
10    97447373    rs10786229    A    T    915.55    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.126;DB;DP=57;Dels=0.0;FS=7.783;HRun=0;HaplotypeScore=0.8941;MQ=59.19;MQ0=0;MQRankSum=0.344;QD=16.06;ReadPosRankSum=0.777;SNPEFF_AMINO_ACID_CHANGE=T201;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97447349_97447476;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCTN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265993    GT:AD:DP:GQ:PL    0/1:26,31:57:99:946,0,838
10    97604406    rs3176886    A    G    1136.14    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.138;DB;DP=73;Dels=0.0;FS=6.583;HRun=1;HaplotypeScore=2.4513;MQ=59.3;MQ0=0;MQRankSum=0.16;QD=15.56;ReadPosRankSum=-0.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ENTPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461927    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1166,0,1245
10    97681714    rs11594853    T    C    638.39    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-1.347;QD=15.2;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:20,22:42:99:668,0,668
10    97684234    rs34963139    G    A    220.15    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=24.46;ReadPosRankSum=1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:2,7:9:50.40:250,0,50
10    97684284    rs35567904    C    A    113.93    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.79;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:144,0,28
10    97684286    rs10882689    C    A    119.76    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.95;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:150,0,28
10    97687184    rs56365500    A    G    438.49    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.607;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=59.11;MQ0=0;MQRankSum=-0.132;QD=16.86;ReadPosRankSum=1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491114    GT:AD:DP:GQ:PL    0/1:10,16:26:99:468,0,332
10    97698338    rs35298116    G    A    798.23    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DB;DP=42;Dels=0.0;FS=3.287;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.582;QD=19.01;ReadPosRankSum=-0.474;SNPEFF_AMINO_ACID_CHANGE=R171H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97698326_97698466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:16,26:42:99:828,0,373
10    97698370    rs4918979    C    T    698.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.687;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.54;MQ0=0;MQRankSum=0.349;QD=13.96;ReadPosRankSum=-1.164;SNPEFF_AMINO_ACID_CHANGE=L182;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97698326_97698466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:25,25:50:99:728,0,906
10    97748040    rs7900838    G    A    884.01    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.164;DB;DP=85;Dels=0.0;FS=3.152;HRun=0;HaplotypeScore=0.734;MQ=59.73;MQ0=0;MQRankSum=0.358;QD=10.4;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CC2D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469549    GT:AD:DP:GQ:PL    0/1:55,30:85:99:914,0,1405
10    97769466    rs7913835    T    C    30.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=6.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:3,2:5:60.62:61,0,109
10    97769856    rs4145209    G    C    37.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.5;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:1,2:3:15.67:67,0,16
10    97772253    rs3748224    C    T    309.07    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.724;DB;DP=25;Dels=0.0;FS=6.186;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.63;QD=12.36;ReadPosRankSum=-0.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:14,11:25:99:339,0,479
10    97772358    rs17383738    A    G    506.28    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=47;Dels=0.0;FS=1.159;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.717;QD=10.77;ReadPosRankSum=0.299;SNPEFF_AMINO_ACID_CHANGE=N125D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_97772289_97772486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CC2D2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424464    GT:AD:DP:GQ:PL    0/1:27,20:47:99:536,0,786
10    97772496    rs10748652    T    A    374.59    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;MQRankSum=-0.055;QD=11.02;ReadPosRankSum=0.856;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:19,14:34:99:405,0,573
10    97778853    rs1414922    C    T    251.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:284,21,0
10    97779219    rs1414921    G    A    1115.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1149,87,0
10    97779281    rs4918984    G    A    800.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=4.407;DB;DP=63;Dels=0.0;FS=6.416;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.661;QD=12.71;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf131;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371202    GT:AD:DP:GQ:PL    0/1:36,27:63:99:831,0,1029
10    97809854    rs79293542    T    C    78    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.5;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265992    GT:AD:DP:GQ:PL    0/1:1,3:4:15.63:108,0,16
10    97816420    rs7099399    G    A    122.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.259;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.323;QD=8.75;ReadPosRankSum=-2.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265992    GT:AD:DP:GQ:PL    0/1:8,6:14:99:152,0,291
10    97919011    rs41291604    A    G    2039.52    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=191;Dels=0.0;FS=1.169;HRun=3;HaplotypeScore=1.933;MQ=59.88;MQ0=0;MQRankSum=0.328;QD=10.68;ReadPosRankSum=1.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF518A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478086    GT:AD:DP:GQ:PL    0/1:116,75:191:99:2070,0,3568
10    97920099    rs113178278    T    TC    8539.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=196;FS=0.0;HRun=1;HaplotypeScore=416.6827;IndelType=I;MQ=60.49;MQ0=0;QD=43.57;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF518A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000316045    GT:AD:DP:GQ:PL    1/1:5,191:196:99:8540,572,0
10    97920278    rs41291608    T    C    1173.23    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.834;DB;DP=82;Dels=0.0;FS=1.819;HRun=0;HaplotypeScore=0.734;MQ=59.77;MQ0=0;MQRankSum=0.478;QD=14.31;ReadPosRankSum=0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF518A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478086    GT:AD:DP:GQ:PL    0/1:42,40:82:99:1203,0,1348
10    97961049    rs6584054    C    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467799    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    97964154    rs10748665    C    T    800.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467799    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:833,63,0
10    97975167    rs3835127    GTA    G    400.22    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.355;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=178.6215;IndelType=D;MQ=58.99;MQ0=0;MQRankSum=0.226;QD=11.12;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472763    GT:AD:DP:GQ:PL    0/1:18,16:35:99:439,0,295
10    97983526    rs10882746    C    T    636.35    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.49;MQ0=0;MQRankSum=0.587;QD=14.14;ReadPosRankSum=-0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224337    GT:AD:DP:GQ:PL    0/1:21,24:45:99:666,0,650
10    97987095    rs11188669    C    T    142.11    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.21;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224337    GT:AD:DP:GQ:PL    0/1:4,6:10:99:172,0,140
10    97987144    rs2305846    C    G    308.82    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.662;DB;DP=23;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.462;QD=13.43;ReadPosRankSum=-0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224337    GT:AD:DP:GQ:PL    0/1:11,12:23:99:339,0,344
10    97987378    rs34233512    G    A    410.58    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.3;MQ0=0;MQRankSum=-1.159;QD=12.44;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224337    GT:AD:DP:GQ:PL    0/1:19,14:33:99:441,0,584
10    98006857    rs2168732    A    T    1618.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=63;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=4.9872;MQ=59.04;MQ0=0;MQRankSum=1.675;QD=25.69;ReadPosRankSum=-0.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224337    GT:AD:DP:GQ:PL    1/1:1,61:63:99:1651,150,0
10    98078001    rs11188710    G    A    2168.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=39.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2201,162,0
10    98078127    rs7081385    C    T    5755.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4942;MQ=59.72;MQ0=0;QD=34.46;SNPEFF_AMINO_ACID_CHANGE=I74;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_98078109_98078283;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5755,427,0
10    98078239    rs6584066    A    G    3324.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=R112G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_98078109_98078283;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3324,256,0
10    98078501    rs6584067    C    T    33.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,3:3:6:65,6,0
10    98082517    rs7097016    T    G    1506.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1539,120,0
10    98084231    rs2181320    A    G    525.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:558,42,0
10    98084403    rs941995    A    T    176.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
10    98087577    rs4917732    A    C    88.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
10    98088387    rs10882773    A    C    496.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:530,39,0
10    98095794    rs10736102    T    C    2140.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.64;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371174    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2173,175,0
10    98105618    rs56148171    A    C    247.59    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.22;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.039;QD=10.76;ReadPosRankSum=-0.472;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPALIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371172    GT:AD:DP:GQ:PL    0/1:14,9:23:99:278,0,469
10    98111279    rs2146392    C    T    94.85    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=6.78;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPALIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371172    GT:AD:DP:GQ:PL    0/1:10,4:14:99:125,0,369
10    98127809    rs41291624    A    C    335.36    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.315;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.995;MQ=58.95;MQ0=0;MQRankSum=-1.173;QD=15.24;ReadPosRankSum=1.244;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    0/1:9,12:22:99:365,0,282
10    98129657    rs12268819    C    G    65.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.89;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    0/1:3,3:6:95.33:95,0,106
10    98136718    rs7900503    A    G    236.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:269,21,0
10    98138640    rs10786286    T    G    821.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:855,72,0
10    98144312    rs7085022    G    A    2052.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2085,156,0
10    98146121    rs72829522    A    G    110.39    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=15.77;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    0/1:2,5:7:63.23:140,0,63
10    98188596    .    T    A    143.02    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=17.88;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    0/1:3,5:8:93.34:173,0,93
10    98239913    rs2281802    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    98240035    rs2281801    A    T    940.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:973,75,0
10    98240045    rs2281800    C    T    1084.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357947    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1118,87,0
10    98282160    rs17391197    A    G    216.61    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.188;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=11.4;ReadPosRankSum=0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    0/1:11,8:19:99:247,0,320
10    98287094    rs10786298    T    A    679.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:712,54,0
10    98287261    rs3789957    G    C    161.30    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=32;Dels=0.0;FS=1.973;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.745;QD=5.04;ReadPosRankSum=0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    0/1:23,9:32:99:191,0,745
10    98311190    rs10882816    G    T    591.72    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.529;DB;DP=50;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=1.864;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=11.83;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464654    GT:AD:DP:GQ:PL    0/1:24,26:50:99:622,0,740
10    98312891    rs10736113    C    T    250.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.065;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.377;QD=13.93;ReadPosRankSum=1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    0/1:10,8:18:99:281,0,277
10    98319236    rs10128106    G    T    73.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.71;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    0/1:2,3:5:69.72:104,0,70
10    98319367    rs3818389    A    T    245.11    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=19;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.449;QD=12.9;ReadPosRankSum=-0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    0/1:10,9:19:99:275,0,289
10    98319503    rs3818390    A    T    186.54    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=25;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.312;QD=7.46;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    0/1:12,13:25:99:217,0,369
10    98321928    rs7094142    A    T    306.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    1/1:1,11:12:27.08:339,27,0
10    98336341    rs61858555    C    A    381.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=1.043;QD=13.61;ReadPosRankSum=-0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    0/1:14,14:28:99:411,0,439
10    98346411    rs11188836    A    C    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371142    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
10    98380363    rs7910630    A    G    548.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339364    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:582,42,0
10    98383329    rs4917745    G    T    3465.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468783    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3466,256,0
10    98386433    rs1469847    C    A    342.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468783    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:375,30,0
10    98386558    rs4344416    G    A    1229.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.38;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=L125;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_98386465_98386662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3AP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371109    GT:AD:DP:GQ:PL    1/1:1,36:37:96.30:1262,96,0
10    98392872    rs6584092    A    C    424.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339364    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:458,36,0
10    98408714    rs912483    A    G    108.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=27.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339364    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
10    98410901    rs3748232    A    G    245.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339364    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:278,24,0
10    98469507    rs3748229    C    A    1729.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=A83S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_98469324_98469740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3AP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339364    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1762,129,0
10    98797351    rs2805586    A    G    524.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314867    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:558,48,0
10    98808609    .    T    TAGGTGGAC    554.68    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=92.463;IndelType=I;MQ=37.99;MQ0=0;QD=61.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453547    GT:AD:DP:GQ:PL    1/1:3,3:9:21.04:597,21,0
10    98808866    rs2805588    C    G    778.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_AMINO_ACID_CHANGE=A430;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_98808712_98808875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314867    GT:AD:DP:GQ:PL    1/1:0,25:25:60.20:812,60,0
10    98816299    rs2306951    C    T    355.03    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=58.84;MQ0=0;MQRankSum=0.372;QD=17.75;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371041    GT:AD:DP:GQ:PL    0/1:9,11:20:99:385,0,254
10    98816406    rs2306952    C    T    32.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371041    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:63,0,32
10    98819317    rs2817676    A    G    248.57    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=19;Dels=0.0;FS=4.832;HRun=0;HaplotypeScore=0.8321;MQ=58.78;MQ0=0;MQRankSum=2.793;QD=13.08;ReadPosRankSum=1.212;SNPEFF_AMINO_ACID_CHANGE=C322R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_98819217_98819318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314867    GT:AD:DP:GQ:PL    0/1:6,13:19:99:279,0,126
10    98820314    rs2306953    G    A    125.76    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=10.48;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497714    GT:AD:DP:GQ:PL    0/1:7,5:12:99:156,0,151
10    98824776    rs77028492    C    T    261.13    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=23.74;ReadPosRankSum=-1.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497714    GT:AD:DP:GQ:PL    0/1:3,8:11:80.24:291,0,80
10    98923361    rs2636772    T    C    323.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453547    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:356,30,0
10    98988759    rs1468069    A    C    624.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358308    GT:AD:DP:GQ:PL    1/1:0,19:20:48.16:658,48,0
10    98989454    rs2297987    A    G    868.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316676    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:902,69,0
10    99003556    rs793527    C    T    112.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316676    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
10    99003613    rs793528    A    C    511.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316676    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:544,39,0
10    99015804    rs2250134    T    C    79.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466484    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
10    99019144    rs3740522    C    T    1587.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466484    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1620,129,0
10    99019177    rs2253301    A    G    1725.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.61;MQ0=0;QD=29.25;SNPEFF_AMINO_ACID_CHANGE=H265;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99019159_99019385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355366    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1759,141,0
10    99023546    rs793523    G    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316676    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
10    99025611    rs10882884    T    A    2619.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8907;MQ=59.72;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316676    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2653,202,0
10    99117120    rs10882905    G    A    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315563    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
10    99120454    rs11599228    G    A    177.12    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=16.1;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315563    GT:AD:DP:GQ:PL    0/1:4,7:11:99:207,0,135
10    99125949    rs2275580    C    T    1091.83    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=5.56;DB;DP=80;Dels=0.0;FS=8.677;HRun=0;HaplotypeScore=0.9665;MQ=58.84;MQ0=0;MQRankSum=0.23;QD=13.65;ReadPosRankSum=-1.673;SNPEFF_AMINO_ACID_CHANGE=G1045S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99125865_99125990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315563    GT:AD:DP:GQ:PL    0/1:43,37:80:99:1122,0,1184
10    99126923    rs2297990    G    A    625.27    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.136;DB;DP=32;Dels=0.0;FS=2.079;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.576;QD=19.54;ReadPosRankSum=-0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315563    GT:AD:DP:GQ:PL    0/1:12,20:32:99:655,0,323
10    99129230    rs6584122    T    C    77.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=7.79;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=A687;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99129182_99129339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536831    GT:AD:DP:GQ:PL    0/1:6,4:10:99:108,0,186
10    99139140    rs41300217    G    A    1194.62    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.138;DB;DP=96;Dels=0.0;FS=0.814;HRun=1;HaplotypeScore=1.9301;MQ=59.52;MQ0=0;MQRankSum=1.552;QD=12.44;ReadPosRankSum=-0.357;SNPEFF_AMINO_ACID_CHANGE=L288;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99139050_99139171;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536831    GT:AD:DP:GQ:PL    0/1:55,41:96:99:1225,0,1751
10    99150476    rs41303833    A    G    1846.61    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.586;DB;DP=123;Dels=0.0;FS=0.731;HRun=0;HaplotypeScore=0.8667;MQ=59.81;MQ0=0;MQRankSum=-0.35;QD=15.01;ReadPosRankSum=0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315563    GT:AD:DP:GQ:PL    0/1:57,65:123:99:1877,0,1734
10    99153540    rs7898743    T    G    330.30    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.436;DB;DP=26;Dels=0.0;FS=11.09;HRun=0;HaplotypeScore=0.9469;MQ=58.2;MQ0=0;MQRankSum=-2.108;QD=12.7;ReadPosRankSum=0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315563    GT:AD:DP:GQ:PL    0/1:11,15:26:99:360,0,359
10    99160965    rs2275091    A    G    1782.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=P8;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99160850_99161040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315563    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1815,141,0
10    99189992    rs76098305    G    A    233.44    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.52;MQ0=0;MQRankSum=0.0;QD=21.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464440    GT:AD:DP:GQ:PL    0/1:3,8:11:83.36:263,0,83
10    99190490    rs60890987    C    T    478.05    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.382;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=52.19;MQ0=0;MQRankSum=2.119;QD=17.07;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464440    GT:AD:DP:GQ:PL    0/1:13,15:28:99:508,0,432
10    99191935    rs764223    G    A    225.77    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.88;MQ0=0;MQRankSum=-0.106;QD=14.11;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370884    GT:AD:DP:GQ:PL    0/1:7,9:16:99:256,0,239
10    99197273    rs3763672    T    A    134.41    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.55;MQ0=0;MQRankSum=0.244;QD=11.2;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476234    GT:AD:DP:GQ:PL    0/1:7,5:12:99:164,0,238
10    99198205    rs12250338    T    C    64.20    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.517;QD=8.03;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476234    GT:AD:DP:GQ:PL    0/1:5,3:8:94.20:94,0,138
10    99198507    rs143518097    AT    A    169.96    QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=0.744;DB;DP=135;FS=0.0;HRun=20;HaplotypeScore=884.1212;IndelType=D;MQ=51.44;MQ0=0;MQRankSum=1.398;QD=1.26;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476234    GT:AD:DP:GQ:PL    0/1:90,29:135:99:209,0,397
10    99205686    rs2297666    A    G    516.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.248;DB;DP=38;Dels=0.0;FS=2.693;HRun=2;HaplotypeScore=1.6609;MQ=57.53;MQ0=0;MQRankSum=0.876;QD=13.59;ReadPosRankSum=-0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370884    GT:AD:DP:GQ:PL    0/1:19,19:38:99:546,0,553
10    99205731    rs4919098    A    G    485.27    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=42;Dels=0.0;FS=7.2;HRun=2;HaplotypeScore=0.0;MQ=57.2;MQ0=0;MQRankSum=0.581;QD=11.55;ReadPosRankSum=0.505;SNPEFF_AMINO_ACID_CHANGE=P4;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99205712_99205774;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370884    GT:AD:DP:GQ:PL    0/1:23,19:42:99:515,0,782
10    99211218    rs10882938    C    G    47.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345745    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    99220707    rs3740526    C    T    2317.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=G692D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99220664_99220764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327238    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2351,184,0
10    99225738    rs2236575    T    A    4426.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7079;MQ=59.64;MQ0=0;QD=34.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422685    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4426,331,0
10    99240758    rs2275586    G    C    2544.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=A51G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99240699_99240799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMS19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422291    GT:AD:DP:GQ:PL    1/1:0,75:76:99:2578,190,0
10    99337473    rs10786357    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298808    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
10    99337572    rs7094973    G    A    200.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_AMINO_ACID_CHANGE=A35T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99337557_99337658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370655    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:233,18,0
10    99359987    rs2297643    G    A    458.26    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.302;QD=15.28;ReadPosRankSum=0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HOGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370646    GT:AD:DP:GQ:PL    0/1:13,17:30:99:488,0,424
10    99371147    rs1124116    A    G    86.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=12.36;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307450    GT:AD:DP:GQ:PL    0/1:2,5:7:64.94:116,0,65
10    99371344    rs12261752    C    A    615.52    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.421;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8606;MQ=59.54;MQ0=0;MQRankSum=0.909;QD=15.01;ReadPosRankSum=-1.14;SNPEFF_AMINO_ACID_CHANGE=A141;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99371267_99372559;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HOGA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370647    GT:AD:DP:GQ:PL    0/1:16,25:41:99:646,0,403
10    99376843    rs4919121    A    C    1967.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9134;MQ=59.58;MQ0=0;QD=35.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HOGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370646    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2001,150,0
10    99422648    rs7905087    A    G    701.29    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.757;QD=18.95;ReadPosRankSum=-1.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370631    GT:AD:DP:GQ:PL    0/1:13,24:37:99:731,0,365
10    99426975    rs4254004    C    T    259.89    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=29;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=4.4958;MQ=58.39;MQ0=0;MQRankSum=0.327;QD=8.96;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370631    GT:AD:DP:GQ:PL    0/1:14,15:29:99:290,0,400
10    99433297    rs2065672    C    T    698.99    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.673;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=-2.064;QD=14.27;ReadPosRankSum=0.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AVPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370626    GT:AD:DP:GQ:PL    0/1:25,24:49:99:729,0,779
10    99437822    rs3750564    A    G    207.37    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=23;Dels=0.0;FS=7.471;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.643;QD=9.02;ReadPosRankSum=0.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4K2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370631    GT:AD:DP:GQ:PL    0/1:13,10:23:99:237,0,407
10    99439541    rs2275047    G    C    250.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.741;DB;DP=21;Dels=0.0;FS=6.41;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.746;QD=11.92;ReadPosRankSum=1.03;SNPEFF_AMINO_ACID_CHANGE=A41G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99439376_99439672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AVPI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370626    GT:AD:DP:GQ:PL    0/1:12,9:21:99:280,0,384
10    99473666    rs11189342    C    G    68.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.99;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99473481_99475742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MARVELD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285605    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
10    99473729    rs71486131    C    G    70.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=10.02;ReadPosRankSum=-1.3;SNPEFF_AMINO_ACID_CHANGE=G32;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99473481_99475742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MARVELD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285605    GT:AD:DP:GQ:PL    0/1:3,4:7:99:100,0,106
10    99516955    rs10882995    G    A    136.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=14;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.71;QD=9.74;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337540    GT:AD:DP:GQ:PL    0/1:8,6:14:99:166,0,223
10    99517355    rs3750612    A    G    373.19    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1766;MQ=60.0;MQ0=0;MQRankSum=1.624;QD=7.62;ReadPosRankSum=-0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337540    GT:AD:DP:GQ:PL    0/1:33,16:49:99:403,0,1078
10    99518810    rs1981238    C    T    32.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473237    GT:AD:DP:GQ:PL    0/1:2,2:4:62.67:63,0,71
10    99518874    rs10882996    G    A    94.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.86;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473237    GT:AD:DP:GQ:PL    0/1:4,4:8:99:125,0,137
10    99518901    rs12412543    G    C    134.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.48;ReadPosRankSum=1.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473237    GT:AD:DP:GQ:PL    0/1:5,5:10:99:165,0,159
10    99519097    rs1981237    A    G    152.58    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.902;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=6.63;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453958    GT:AD:DP:GQ:PL    0/1:16,7:23:99:183,0,510
10    99642304    rs683821    A    G    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298819    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
10    99642362    rs684225    C    A    82.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298819    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
10    99642731    rs588061    C    T    110.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298819    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
10    99655648    rs577537    G    T    306.67    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=31;Dels=0.0;FS=6.958;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.75;QD=9.89;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=G333;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99655642_99655742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413387    GT:AD:DP:GQ:PL    0/1:19,12:31:99:337,0,572
10    99677094    rs746553    C    A    31.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298819    GT:AD:DP:GQ:PL    0/1:2,4:6:61.74:62,0,71
10    99682981    rs894375    T    C    191.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=10.62;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298819    GT:AD:DP:GQ:PL    0/1:10,8:18:99:221,0,238
10    99696003    rs35027739    G    A    237.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=25;Dels=0.0;FS=7.474;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.776;QD=9.48;ReadPosRankSum=-1.511;SNPEFF_AMINO_ACID_CHANGE=I107;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99695927_99696123;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309155    GT:AD:DP:GQ:PL    0/1:12,12:25:99:267,0,283
10    99969475    rs34494334    A    C    921.13    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=2.689;DB;DP=56;Dels=0.0;FS=7.992;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.377;QD=16.45;ReadPosRankSum=-1.263;SNPEFF_AMINO_ACID_CHANGE=D535A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99967858_99969656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298999    GT:AD:DP:GQ:PL    0/1:27,29:56:99:951,0,862
10    99991408    rs1952061    A    G    2040.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=H48R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_99991269_99991444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370586    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2073,159,0
10    99995773    rs61875307    C    T    803.52    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=44;Dels=0.0;FS=3.519;HRun=2;HaplotypeScore=0.9578;MQ=58.95;MQ0=0;MQRankSum=1.205;QD=18.26;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298999    GT:AD:DP:GQ:PL    0/1:17,27:44:99:834,0,467
10    100003785    rs1359508    T    C    479.46    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.361;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.701;QD=23.97;ReadPosRankSum=-1.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    0/1:6,14:20:99:509,0,183
10    100011970    rs3750598    G    A    242.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=12.1;ReadPosRankSum=-1.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    0/1:10,10:20:99:272,0,351
10    100012011    rs10748722    C    T    1455.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1488,117,0
10    100013244    rs3750599    A    C    261.88    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.631;DB;DP=23;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.215;QD=11.39;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    0/1:12,11:23:99:292,0,392
10    100013438    rs17524355    C    T    119.82    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=2.188;DB;DP=21;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.784;QD=5.71;ReadPosRankSum=-0.784;SNPEFF_AMINO_ACID_CHANGE=A569;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_100013310_100013553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    0/1:16,5:21:99:150,0,480
10    100013563    rs7086391    C    T    105.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=11.73;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,157
10    100015603    rs3763689    G    T    77.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.34;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:107,0,29
10    100021533    rs735116    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    100021548    rs912809    C    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    100022446    rs10736125    A    G    1357.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.92;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260702    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1391,114,0
10    100183774    rs10883093    A    G    177.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498219    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
10    100193679    rs1886728    G    C    302.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474873    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:335,24,0
10    100194884    rs112463509    G    T    242.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325103    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
10    100195583    rs2296430    T    A    1011.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325103    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1044,78,0
10    100202987    rs58548334    A    G    798.35    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.988;DB;DP=69;Dels=0.0;FS=16.227;HRun=1;HaplotypeScore=0.9987;MQ=59.73;MQ0=0;MQRankSum=-1.352;QD=11.57;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=V4A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_100202881_100202997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325103    GT:AD:DP:GQ:PL    0/1:40,29:69:99:828,0,1356
10    100219314    rs10883099    G    A    255.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=26;Dels=0.0;FS=4.419;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;MQRankSum=-0.788;QD=9.81;ReadPosRankSum=-0.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370546    GT:AD:DP:GQ:PL    0/1:13,13:26:99:285,0,263
10    100219374    rs10883100    T    A    252.03    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.959;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.32;QD=10.96;ReadPosRankSum=-0.178;SNPEFF_AMINO_ACID_CHANGE=Y467F;SNPEFF_CODON_CHANGE=tAt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_100219331_100219496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404542    GT:AD:DP:GQ:PL    0/1:13,10:23:99:282,0,411
10    100219519    rs11189618    G    A    69.14    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=11;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.453;QD=6.29;ReadPosRankSum=0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370546    GT:AD:DP:GQ:PL    0/1:5,6:11:99:99,0,180
10    100250019    rs112789908    GACACACACAC    G    690.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=146.1128;IndelType=D;MQ=45.26;MQ0=0;QD=43.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370546    GT:AD:DP:GQ:PL    1/1:8,8:16:24.08:733,24,0
10    100374505    rs1252780    C    T    603.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=37.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPSE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370546    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:637,48,0
10    101090428    rs2862600    T    G    1442.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_AMINO_ACID_CHANGE=V357;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101089691_101090717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370528    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1476,114,0
10    101150256    rs3793931    A    G    827.37    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9877;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=14.77;ReadPosRankSum=0.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356713    GT:AD:DP:GQ:PL    0/1:30,26:56:99:857,0,1014
10    101293035    rs41290504    C    A    859.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.79;SNPEFF_AMINO_ACID_CHANGE=A49;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101292690_101293246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX2-3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344586    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:892,66,0
10    101293318    rs7908704    G    A    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX2-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344586    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
10    101293341    rs7893840    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX2-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344586    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    101372411    rs880568    T    C    1655.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479722    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1688,126,0
10    101379795    rs12252561    G    C    62.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370495    GT:AD:DP:GQ:PL    0/1:3,3:6:90.86:92,0,91
10    101439252    rs3740079    G    A    492.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370489    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:526,39,0
10    101445591    rs3740078    A    C    311.92    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=1.861;DB;DP=35;Dels=0.0;FS=8.157;HRun=2;HaplotypeScore=0.9973;MQ=59.34;MQ0=0;MQRankSum=0.461;QD=8.91;ReadPosRankSum=-0.939;SNPEFF_AMINO_ACID_CHANGE=P197;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101445549_101445652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370489    GT:AD:DP:GQ:PL    0/1:22,13:35:99:342,0,679
10    101451259    rs11190245    T    C    604.61    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.258;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.167;QD=16.34;ReadPosRankSum=-0.593;SNPEFF_AMINO_ACID_CHANGE=V276A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101451142_101451275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370489    GT:AD:DP:GQ:PL    0/1:18,19:37:99:635,0,590
10    101461023    rs4919386    A    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370489    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
10    101473218    rs2231687    A    G    1108.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=F374L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101471601_101473236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370483    GT:AD:DP:GQ:PL    1/1:0,33:33:93.27:1141,93,0
10    101474499    rs11190255    T    C    1404.97    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=75;Dels=0.0;FS=4.284;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.212;QD=18.73;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000016171    GT:AD:DP:GQ:PL    0/1:29,46:75:99:1435,0,820
10    101478000    rs68137778    T    TC    519.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=32.5829;IndelType=I;MQ=58.33;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000016171    GT:AD:DP:GQ:PL    1/1:1,13:14:39.13:562,39,0
10    101489216    rs112343804    CAAAA    C    162.21    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=16;FS=0.0;HRun=20;HaplotypeScore=159.3472;IndelType=D;MQ=48.92;MQ0=0;MQRankSum=-1.044;QD=10.14;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000016171    GT:AD:DP:GQ:PL    0/1:3,7:16:9.17:201,0,9
10    101514219    rs17112219    G    A    1474.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=7.156;DB;DP=92;Dels=0.0;FS=2.1;HRun=0;HaplotypeScore=4.4712;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=16.03;ReadPosRankSum=1.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CUTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370472    GT:AD:DP:GQ:PL    0/1:46,46:92:99:1505,0,1211
10    101515316    rs3184991    T    C    578.58    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=41;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.394;QD=14.11;ReadPosRankSum=-0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CUTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370472    GT:AD:DP:GQ:PL    0/1:22,19:41:99:609,0,715
10    101544447    rs927344    A    T    2498.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.41;MQ0=0;QD=32.03;SNPEFF_AMINO_ACID_CHANGE=Y39F;SNPEFF_CODON_CHANGE=tAc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101544365_101544538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370434    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2531,190,0
10    101551902    rs2756108    C    T    2060.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.6651;MQ=55.13;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370434    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2094,171,0
10    101557329    rs6584327    A    C    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496621    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
10    101558746    rs2756109    G    T    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370434    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:71,0,34
10    101563815    rs2273697    G    A    1045.67    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.012;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6614;MQ=59.21;MQ0=0;MQRankSum=0.948;QD=13.58;ReadPosRankSum=-1.053;SNPEFF_AMINO_ACID_CHANGE=V417I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101563776_101564030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370449    GT:AD:DP:GQ:PL    0/1:42,35:77:99:1076,0,1111
10    101566866    rs4148391    T    A    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370449    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,71
10    101571528    rs3740074    C    T    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370449    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
10    101576960    rs3740073    T    C    277.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370449    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:311,24,0
10    101589925    rs4148395    G    A    154.24    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=22.03;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370449    GT:AD:DP:GQ:PL    0/1:2,5:7:61.94:184,0,62
10    101591944    rs4148396    T    C    440    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370449    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:473,36,0
10    101654696    rs3758394    T    C    412.92    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=28;Dels=0.0;FS=1.52;HRun=0;HaplotypeScore=0.9958;MQ=58.33;MQ0=0;MQRankSum=0.753;QD=14.75;ReadPosRankSum=-0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422692    GT:AD:DP:GQ:PL    0/1:11,17:28:99:443,0,333
10    101841153    rs10883439    A    G    240.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370418    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:273,21,0
10    101912064    rs2862954    T    C    1709.95    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.206;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7839;MQ=59.81;MQ0=0;MQRankSum=-0.345;QD=13.79;ReadPosRankSum=-0.807;SNPEFF_AMINO_ACID_CHANGE=I207V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101912018_101912109;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERLIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370410    GT:AD:DP:GQ:PL    0/1:59,65:124:99:1740,0,1674
10    101912194    rs1408579    C    T    311.93    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=12.0;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERLIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370408    GT:AD:DP:GQ:PL    0/1:14,12:26:99:342,0,433
10    101937969    rs3750707    A    G    430.02    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.997;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.34;MQ0=0;MQRankSum=-0.149;QD=12.29;ReadPosRankSum=-1.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERLIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370408    GT:AD:DP:GQ:PL    0/1:17,18:35:99:460,0,548
10    101954347    rs17878999    C    T    125.13    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=8.94;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370397    GT:AD:DP:GQ:PL    0/1:9,5:14:99:155,0,336
10    101977883    rs2230804    C    T    306.30    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.215;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.23;MQ0=0;MQRankSum=0.197;QD=10.21;ReadPosRankSum=-1.162;SNPEFF_AMINO_ACID_CHANGE=V268I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_101977752_101977887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHUK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370397    GT:AD:DP:GQ:PL    0/1:16,14:30:99:336,0,500
10    101980459    rs986266    A    G    1107.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370397    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1141,87,0
10    101998052    rs3750709    A    G    511.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8737;MQ=59.36;MQ0=0;MQRankSum=1.661;QD=14.22;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354105    GT:AD:DP:GQ:PL    0/1:18,18:36:99:542,0,545
10    102003579    rs35616070    C    G    884.93    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=79;Dels=0.0;FS=12.026;HRun=0;HaplotypeScore=3.4537;MQ=60.0;MQ0=0;MQRankSum=-1.024;QD=11.2;ReadPosRankSum=0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496796    GT:AD:DP:GQ:PL    0/1:47,32:79:99:915,0,1689
10    102006402    rs2281949    C    T    76.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.15;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473842    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:107,0,29
10    102006429    rs4919438    T    C    118.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.82;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473842    GT:AD:DP:GQ:PL    0/1:2,4:6:58.05:149,0,58
10    102006625    rs7073610    G    A    521.68    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.801;DB;DP=42;Dels=0.0;FS=5.02;HRun=0;HaplotypeScore=0.9989;MQ=58.89;MQ0=0;MQRankSum=-0.038;QD=12.42;ReadPosRankSum=0.491;SNPEFF_AMINO_ACID_CHANGE=P14L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102006552_102006668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370379    GT:AD:DP:GQ:PL    0/1:22,20:42:99:552,0,693
10    102009980    rs7072367    T    C    278.33    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.498;QD=11.6;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473842    GT:AD:DP:GQ:PL    0/1:14,10:24:99:308,0,472
10    102016044    rs2270962    C    T    1309.87    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.141;QD=14.08;ReadPosRankSum=-1.195;SNPEFF_AMINO_ACID_CHANGE=C160Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102016019_102016233;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354105    GT:AD:DP:GQ:PL    0/1:46,47:93:99:1340,0,1351
10    102016268    rs2270961    G    A    482.52    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=31;Dels=0.0;FS=4.576;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.041;QD=15.57;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354105    GT:AD:DP:GQ:PL    0/1:16,15:31:99:513,0,458
10    102020150    .    G    GA    113.64    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DP=13;FS=0.0;HRun=6;HaplotypeScore=30.3572;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=8.74;ReadPosRankSum=1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CWF19L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354105    GT:AD:DP:GQ:PL    0/1:8,5:13:99:153,0,172
10    102046380    rs33965491    T    G    52.78    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=4.4;ReadPosRankSum=-1.034;SNPEFF_AMINO_ACID_CHANGE=S13R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102046362_102046439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLOC1S2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358848    GT:AD:DP:GQ:PL    0/1:7,5:12:82.78:83,0,186
10    102048208    rs12782963    G    T    1209.76    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.186;DB;DP=86;Dels=0.0;FS=6.808;HRun=0;HaplotypeScore=2.5608;MQ=60.0;MQ0=0;MQRankSum=0.277;QD=14.07;ReadPosRankSum=-0.045;SNPEFF_AMINO_ACID_CHANGE=P760T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102047903_102048235;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353274    GT:AD:DP:GQ:PL    0/1:41,44:86:99:1240,0,1243
10    102048269    rs2305386    G    A    391.78    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.022;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.101;QD=12.64;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339977    GT:AD:DP:GQ:PL    0/1:18,13:31:99:422,0,604
10    102050242    rs6584356    C    A    671.71    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=3.681;DB;DP=39;Dels=0.0;FS=3.469;HRun=0;HaplotypeScore=2.7463;MQ=59.41;MQ0=0;MQRankSum=-0.707;QD=17.22;ReadPosRankSum=-0.274;SNPEFF_AMINO_ACID_CHANGE=R606L;SNPEFF_CODON_CHANGE=cGa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102050158_102050276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338519    GT:AD:DP:GQ:PL    0/1:15,24:39:99:702,0,423
10    102050344    rs6584357    A    T    146.11    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.556;QD=9.74;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318222    GT:AD:DP:GQ:PL    0/1:7,8:15:99:176,0,195
10    102050347    rs2242053    T    C    146.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.625;QD=9.77;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318222    GT:AD:DP:GQ:PL    0/1:6,9:15:99:177,0,160
10    102050971    rs5787377    A    AG    1450.70    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.037;DB;DP=74;FS=6.974;HRun=2;HaplotypeScore=188.8774;IndelType=I;MQ=60.91;MQ0=0;MQRankSum=1.071;QD=19.6;ReadPosRankSum=-2.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318222    GT:AD:DP:GQ:PL    0/1:34,40:74:99:1490,0,974
10    102051244    rs35423189    G    T    209.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=2.202;QD=14.96;ReadPosRankSum=-0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318222    GT:AD:DP:GQ:PL    0/1:7,7:14:99:239,0,253
10    102052884    rs35662118    C    T    404.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.657;DB;DP=38;Dels=0.0;FS=3.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.35;QD=10.64;ReadPosRankSum=-1.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318222    GT:AD:DP:GQ:PL    0/1:19,19:38:99:434,0,618
10    102056745    rs2278842    C    T    204.47    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.342;DB;DP=17;Dels=0.0;FS=6.422;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.903;QD=12.03;ReadPosRankSum=0.342;SNPEFF_AMINO_ACID_CHANGE=V318I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102056737_102056965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338519    GT:AD:DP:GQ:PL    0/1:10,7:17:99:234,0,353
10    102059329    rs2242050    G    C    419.03    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.305;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.971;QD=16.76;ReadPosRankSum=1.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532547    GT:AD:DP:GQ:PL    0/1:10,15:25:99:449,0,301
10    102088906    rs3829159    C    T    815.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318222    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:848,63,0
10    102104521    rs735877    C    T    245.90    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DB;DP=20;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.9987;MQ=58.84;MQ0=0;MQRankSum=-0.456;QD=12.29;ReadPosRankSum=0.076;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370355    GT:AD:DP:GQ:PL    0/1:11,9:20:99:276,0,313
10    102107251    rs1054411    C    G    119.43    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=16;Dels=0.0;FS=5.219;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.065;QD=7.46;ReadPosRankSum=0.065;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_102107233_102107288;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423840    GT:AD:DP:GQ:PL    0/1:9,7:16:99:149,0,245
10    102116311    rs2234970    A    C    501.39    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=34;Dels=0.0;FS=1.624;HRun=0;HaplotypeScore=0.0;MQ=60.32;MQ0=0;MQRankSum=-1.243;QD=14.75;ReadPosRankSum=1.387;SNPEFF_AMINO_ACID_CHANGE=M224L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102116289_102116521;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370355    GT:AD:DP:GQ:PL    0/1:18,16:34:99:531,0,493
10    102120255    rs599189    C    G    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423840    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    102257348    rs77000964    C    T    674.07    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.41;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.37;QD=17.74;ReadPosRankSum=-0.902;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC31B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451524    GT:AD:DP:GQ:PL    0/1:16,22:38:99:704,0,518
10    102265056    rs140191147    AAC    A    100.55    PASS    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=3.026;DB;DP=40;FS=2.851;HRun=0;HaplotypeScore=140.0223;IndelType=D;MQ=58.51;MQ0=0;MQRankSum=-1.128;QD=2.51;ReadPosRankSum=-0.877;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531258    GT:AD:DP:GQ:PL    0/1:33,7:40:99:140,0,1265
10    102295836    rs2295778    C    G    121.54    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=2.463;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=11.05;ReadPosRankSum=-0.466;SNPEFF_AMINO_ACID_CHANGE=P41A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102295616_102295892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIF1AN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299163    GT:AD:DP:GQ:PL    0/1:6,5:11:99:152,0,216
10    102300183    .    A    G    116.92    PASS    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIF1AN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299163    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
10    102506070    rs4472867    G    C    1140.88    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.116;DB;DP=92;Dels=0.0;FS=3.052;HRun=2;HaplotypeScore=1.399;MQ=58.79;MQ0=0;MQRankSum=1.947;QD=12.4;ReadPosRankSum=-0.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355243    GT:AD:DP:GQ:PL    0/1:44,48:92:99:1171,0,1142
10    102566514    rs78118302    T    C    149.74    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.933;QD=10.7;ReadPosRankSum=-2.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553492    GT:AD:DP:GQ:PL    0/1:5,9:14:99:180,0,125
10    102568872    rs1800897    C    T    793.06    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=4.204;DB;DP=87;Dels=0.0;FS=3.12;HRun=0;HaplotypeScore=0.8321;MQ=59.74;MQ0=0;MQRankSum=0.496;QD=9.12;ReadPosRankSum=-0.147;SNPEFF_AMINO_ACID_CHANGE=N181;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102568867_102568993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370294    GT:AD:DP:GQ:PL    0/1:55,32:87:99:823,0,1479
10    102568983    rs1800898    A    C    952.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.337;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.842;QD=27.2;ReadPosRankSum=-0.446;SNPEFF_AMINO_ACID_CHANGE=P218;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102568867_102568993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370294    GT:AD:DP:GQ:PL    1/1:1,34:35:44.60:985,45,0
10    102584597    rs11190717    G    A    295.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=32;Dels=0.0;FS=24.707;HRun=0;HaplotypeScore=0.9992;MQ=59.28;MQ0=0;MQRankSum=0.409;QD=9.23;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355243    GT:AD:DP:GQ:PL    0/1:20,12:32:99:325,0,490
10    102586723    rs2270185    T    C    255.54    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-3.038;QD=9.83;ReadPosRankSum=-0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355243    GT:AD:DP:GQ:PL    0/1:15,11:26:99:286,0,402
10    102684380    rs10883563    C    A    3062.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.79;MQ0=0;QD=35.2;SNPEFF_AMINO_ACID_CHANGE=S541Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102683732_102684729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238961    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3095,232,0
10    102685584    rs12219858    G    A    510.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238961    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:544,45,0
10    102689217    rs2273654    T    C    946.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370271    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:980,72,0
10    102689504    rs10786614    G    A    623.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370271    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:656,48,0
10    102706598    rs1122556    A    G    128.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM178A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481654    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:161,15,0
10    102746231    rs7184    C    T    1022.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=35.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487059    GT:AD:DP:GQ:PL    1/1:0,28:29:84.24:1055,84,0
10    102762256    rs752974    C    T    1222.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.22;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_102759233_102762703;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370220    GT:AD:DP:GQ:PL    1/1:0,32:32:93.31:1256,93,0
10    102770082    rs807023    T    G    736.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_AMINO_ACID_CHANGE=N855T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102770029_102770640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393462    GT:AD:DP:GQ:PL    1/1:0,26:26:60.19:769,60,0
10    102777669    rs191331869    G    T    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476306    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:77,6,0
10    102777768    rs11190793    C    G    530.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476306    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:564,42,0
10    102780265    rs7075659    G    A    204.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470414    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
10    102780312    rs7075685    G    T    334.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470414    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:367,27,0
10    102780354    rs77484072    TG    T    474.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=56.3722;IndelType=D;MQ=61.53;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470414    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:517,42,0
10    102783678    rs6584410    T    C    2379.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370215    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2413,187,0
10    102792295    rs807014    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224807    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    102796774    rs2275383    C    T    81.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.74;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.207;QD=3.9;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224807    GT:AD:DP:GQ:PL    0/1:15,6:21:99:112,0,469
10    102796981    rs138820345    T    G    77.69    QDFilter2    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.039;DB;DP=44;Dels=0.0;FS=23.278;HRun=4;HaplotypeScore=1.6553;MQ=52.77;MQ0=0;MQRankSum=-1.736;QD=1.77;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489434    GT:AD:DP:GQ:PL    0/1:25,18:44:99:108,0,782
10    102797259    rs2275382    C    T    527.09    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.966;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.844;QD=13.52;ReadPosRankSum=-0.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489434    GT:AD:DP:GQ:PL    0/1:19,20:39:99:557,0,438
10    102798346    rs807049    T    C    115.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.16;MQ0=0;MQRankSum=-0.831;QD=7.73;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465383    GT:AD:DP:GQ:PL    0/1:9,6:15:99:146,0,164
10    102824292    rs11190812    G    A    275.51    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.564;DB;DP=24;Dels=0.0;FS=3.741;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.29;QD=11.48;ReadPosRankSum=-0.753;SNPEFF_AMINO_ACID_CHANGE=G236D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102824258_102824405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZALD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370200    GT:AD:DP:GQ:PL    0/1:13,11:24:99:305,0,416
10    102824329    .    G    A    344.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DP=24;Dels=0.0;FS=4.31;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.953;QD=14.34;ReadPosRankSum=-0.548;SNPEFF_AMINO_ACID_CHANGE=E248;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102824258_102824405;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZALD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370200    GT:AD:DP:GQ:PL    0/1:12,12:24:99:374,0,387
10    102824349    rs807037    G    C    954.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=G255A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_102824258_102824405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZALD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370200    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:987,78,0
10    102824760    rs12359843    G    T    216.78    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=21.68;ReadPosRankSum=-1.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAZALD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470106    GT:AD:DP:GQ:PL    0/1:3,7:10:97.31:247,0,97
10    103221870    rs5787432    CAGG    C    1025.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=104.2123;IndelType=D;MQ=51.18;MQ0=0;QD=42.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370183    GT:AD:DP:GQ:PL    1/1:2,22:24:66.22:1068,66,0
10    103281308    rs9419923    A    G    71.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=8.96;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370183    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,181
10    103281722    rs9420854    C    G    416.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=32.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475200    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:449,36,0
10    103291249    rs9420859    T    C    192    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370187    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:225,18,0
10    103340056    rs3730477    G    A    724.90    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DB;DP=66;Dels=0.0;FS=0.979;HRun=0;HaplotypeScore=2.5251;MQ=59.72;MQ0=0;MQRankSum=0.728;QD=10.98;ReadPosRankSum=0.936;SNPEFF_AMINO_ACID_CHANGE=R111W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_103340005_103340173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370168    GT:AD:DP:GQ:PL    0/1:40,26:66:99:755,0,1186
10    103340144    rs3730476    A    G    648.05    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.257;DB;DP=63;Dels=0.0;FS=9.576;HRun=1;HaplotypeScore=1.5253;MQ=59.63;MQ0=0;MQRankSum=0.818;QD=10.29;ReadPosRankSum=0.387;SNPEFF_AMINO_ACID_CHANGE=S131;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_103340005_103340173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339310    GT:AD:DP:GQ:PL    0/1:37,26:63:99:678,0,1229
10    103340179    rs3730475    A    G    457.21    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.633;DB;DP=49;Dels=0.0;FS=4.789;HRun=3;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.331;QD=9.33;ReadPosRankSum=-0.611;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413344    GT:AD:DP:GQ:PL    0/1:26,23:49:99:487,0,839
10    103340235    rs3730474    T    C    387.86    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.946;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.218;QD=13.85;ReadPosRankSum=-0.946;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413344    GT:AD:DP:GQ:PL    0/1:13,15:28:99:418,0,429
10    103343533    rs3730465    A    G    180.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=12;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=15.03;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413344    GT:AD:DP:GQ:PL    0/1:6,6:12:99:210,0,171
10    103345940    rs3730462    CTGTTG    C    476.09    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=3.041;DB;DP=30;FS=1.987;HRun=0;HaplotypeScore=163.8749;IndelType=D;MQ=57.01;MQ0=0;MQRankSum=-0.354;QD=15.87;ReadPosRankSum=2.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416979    GT:AD:DP:GQ:PL    0/1:21,9:30:99:515,0,1787
10    103354182    rs11191055    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370147    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    103354554    rs7911520    A    G    184.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=-0.634;QD=8.8;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370147    GT:AD:DP:GQ:PL    0/1:14,7:21:99:215,0,519
10    103361088    rs7874    C    T    740    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=59;Dels=0.0;FS=2.627;HRun=0;HaplotypeScore=0.8667;MQ=59.37;MQ0=0;MQRankSum=0.146;QD=12.54;ReadPosRankSum=1.388;SNPEFF_AMINO_ACID_CHANGE=N133;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_103360960_103361093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPCD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370147    GT:AD:DP:GQ:PL    0/1:34,25:59:99:770,0,1067
10    103368654    rs7006    T    C    1001.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=80;Dels=0.0;FS=0.861;HRun=0;HaplotypeScore=1.9683;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=12.36;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=C170R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_103368624_103368694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DPCD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370147    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1031,0,1189
10    103550604    rs1124714    T    C    842.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=39;Dels=0.0;FS=5.515;HRun=0;HaplotypeScore=0.9832;MQ=59.41;MQ0=0;MQRankSum=0.551;QD=21.61;ReadPosRankSum=-0.879;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476030    GT:AD:DP:GQ:PL    0/1:13,26:39:99:873,0,425
10    103559245    rs76134290    G    T    509.14    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.176;DB;DP=36;Dels=0.0;FS=5.059;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.778;QD=14.14;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429860    GT:AD:DP:GQ:PL    0/1:17,19:36:99:539,0,489
10    103560186    rs2305194    A    C    297    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=33;Dels=0.0;FS=6.198;HRun=0;HaplotypeScore=0.9469;MQ=58.59;MQ0=0;MQRankSum=-0.409;QD=9.0;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429860    GT:AD:DP:GQ:PL    0/1:20,13:33:99:327,0,696
10    103565960    rs3740422    G    C    296.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.74;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.925;QD=24.7;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357797    GT:AD:DP:GQ:PL    0/1:3,9:12:88.05:326,0,88
10    103567819    rs4919596    C    T    253.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357797    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:286,24,0
10    103569929    .    G    A    544.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.768;DP=35;Dels=0.0;FS=2.026;HRun=5;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.195;QD=15.55;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357797    GT:AD:DP:GQ:PL    0/1:14,21:35:99:574,0,465
10    103587552    rs2305189    G    A    271.75    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=17;Dels=0.0;FS=1.913;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=15.99;ReadPosRankSum=-1.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468905    GT:AD:DP:GQ:PL    0/1:6,11:17:99:302,0,189
10    103588734    rs1562364    A    G    472.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9198;MQ=54.32;MQ0=0;QD=27.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239117    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:506,45,0
10    103599325    rs874885    A    T    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239117    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    103609704    rs7918620    G    T    161.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.53;DB;DP=30;Dels=0.0;FS=2.336;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.99;QD=5.38;ReadPosRankSum=-1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263485    GT:AD:DP:GQ:PL    0/1:20,10:30:99:191,0,734
10    103789677    rs10786660    G    T    72.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.9665;MQ=51.77;MQ0=0;QD=24.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311122    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
10    103799758    rs11191190    C    T    2130.65    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.209;QD=19.73;ReadPosRankSum=0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311122    GT:AD:DP:GQ:PL    0/1:39,69:108:99:2161,0,1094
10    103904763    rs66983008    TC    T    192.90    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=2.822;DB;DP=30;FS=0.0;HRun=8;HaplotypeScore=96.573;IndelType=D;MQ=60.72;MQ0=0;MQRankSum=-0.894;QD=6.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462933    GT:AD:DP:GQ:PL    0/1:19,11:30:99:232,0,516
10    103908080    rs3740405    G    A    789.34    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=65;Dels=0.0;FS=2.195;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=12.14;ReadPosRankSum=-2.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462933    GT:AD:DP:GQ:PL    0/1:35,29:65:99:819,0,1168
10    103916792    rs144588863    A    G    1674.26    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=144;Dels=0.0;FS=2.154;HRun=0;HaplotypeScore=5.3321;MQ=59.55;MQ0=0;MQRankSum=-0.28;QD=11.63;ReadPosRankSum=-1.677;SNPEFF_AMINO_ACID_CHANGE=N46S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_103916776_103916831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOLC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370007    GT:AD:DP:GQ:PL    0/1:83,61:144:99:1704,0,2642
10    103991381    rs2281983    G    A    152.12    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=3.233;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=15.21;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=I95;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_103991345_103991547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370002    GT:AD:DP:GQ:PL    0/1:3,7:10:79.71:182,0,80
10    104018551    .    AG    A    100.70    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.98;DP=25;FS=0.0;HRun=1;HaplotypeScore=303.8693;IndelType=D;MQ=44.86;MQ0=0;MQRankSum=-2.899;QD=4.03;ReadPosRankSum=1.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369983    GT:AD:DP:GQ:PL    0/1:20,5:25:99:140,0,178
10    104111540    .    T    TACC    396.41    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DP=14;FS=0.0;HRun=0;HaplotypeScore=46.1401;IndelType=I;MQ=49.17;MQ0=0;MQRankSum=-2.84;QD=28.31;ReadPosRankSum=-2.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369983    GT:AD:DP:GQ:PL    0/1:9,5:14:99:435,0,308
10    104120522    rs11191269    C    G    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=10.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369983    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:73,6,0
10    104127171    rs2273555    G    A    487.95    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=35;Dels=0.0;FS=1.608;HRun=1;HaplotypeScore=0.9734;MQ=59.34;MQ0=0;MQRankSum=0.413;QD=13.94;ReadPosRankSum=-1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369983    GT:AD:DP:GQ:PL    0/1:18,17:35:99:518,0,623
10    104128954    rs7902882    T    A    2289.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=59.66;MQ0=0;MQRankSum=1.417;QD=34.18;ReadPosRankSum=-0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369983    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2323,180,0
10    104136469    rs2180707    T    C    842.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_AMINO_ACID_CHANGE=I1399;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104136317_104136557;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369983    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:876,69,0
10    104139209    rs145251342    G    A    829.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.404;DB;DP=49;Dels=0.0;FS=1.465;HRun=1;HaplotypeScore=0.9469;MQ=59.81;MQ0=0;MQRankSum=0.758;QD=16.92;ReadPosRankSum=-1.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369983    GT:AD:DP:GQ:PL    0/1:21,28:49:99:859,0,629
10    104140350    rs11191274    G    A    3148.71    PASS    AB=0.502;AC=1;AF=0.50;AN=2;BaseQRankSum=3.365;DB;DP=227;Dels=0.0;FS=7.51;HRun=0;HaplotypeScore=2.4103;MQ=59.8;MQ0=0;MQRankSum=0.611;QD=13.87;ReadPosRankSum=0.651;SNPEFF_AMINO_ACID_CHANGE=G1693S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104140263_104140443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GBF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369983    GT:AD:DP:GQ:PL    0/1:114,113:227:99:3179,0,3378
10    104156390    rs67213717    G    GT    359.89    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.289;DB;DP=23;FS=0.0;HRun=3;HaplotypeScore=55.0707;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=15.65;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189444    GT:AD:DP:GQ:PL    0/1:12,11:23:99:399,0,297
10    104157727    rs4919632    C    T    2763.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471698    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2796,208,0
10    104159196    rs4919633    A    G    59.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.92;SNPEFF_AMINO_ACID_CHANGE=P423;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104159045_104159254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000189444    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:92,9,0
10    104160434    rs4919634    A    G    278.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=27.88;SNPEFF_AMINO_ACID_CHANGE=A607;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104160412_104160581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000189444    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:312,24,0
10    104163489    rs7068416    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000189444    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    104172112    rs78145470    C    T    523.99    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.513;DB;DP=36;Dels=0.0;FS=7.794;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=1.341;QD=14.56;ReadPosRankSum=1.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466551    GT:AD:DP:GQ:PL    0/1:17,19:36:99:554,0,513
10    104184081    rs1044476    G    A    789.85    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=3.533;DB;DP=69;Dels=0.0;FS=0.941;HRun=0;HaplotypeScore=0.5784;MQ=59.67;MQ0=0;MQRankSum=-1.041;QD=11.45;ReadPosRankSum=1.14;SNPEFF_AMINO_ACID_CHANGE=P117;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104184021_104184151;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CUEDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369937    GT:AD:DP:GQ:PL    0/1:41,28:69:99:820,0,1140
10    104184953    rs11597439    C    G    272.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=18;Dels=0.0;FS=4.931;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.171;QD=15.15;ReadPosRankSum=-0.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224862    GT:AD:DP:GQ:PL    0/1:6,12:18:99:303,0,210
10    104184981    rs11593146    A    G    221.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=10.414;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=18.44;ReadPosRankSum=0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224862    GT:AD:DP:GQ:PL    0/1:4,8:12:99:251,0,127
10    104196465    rs2224374    T    C    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CUEDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369937    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
10    104229057    rs35597970    C    CA    407.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=21.1339;IndelType=I;MQ=60.0;MQ0=0;QD=40.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238936    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:450,30,0
10    104229785    rs41306870    C    T    976.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7932;MQ=59.43;MQ0=0;QD=29.58;SNPEFF_AMINO_ACID_CHANGE=P68;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104229750_104229832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238936    GT:AD:DP:GQ:PL    1/1:0,33:33:78.24:1009,78,0
10    104230930    rs68007409    TTCGGTGCTGGG    T    491.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=97.6451;IndelType=D;MQ=36.98;MQ0=0;QD=54.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238936    GT:AD:DP:GQ:PL    1/1:4,5:9:15.05:533,15,0
10    104231054    rs11191295    A    G    434.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=V243;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104231030_104231153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238936    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:467,36,0
10    104231234    rs913028    T    C    300.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.05;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238936    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:334,27,0
10    104231651    rs7081110    A    G    414.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238936    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:448,33,0
10    104231662    rs7081467    G    C    355.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238936    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:389,30,0
10    104232716    rs3740415    G    A    1186.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=30.42;ReadPosRankSum=-1.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369931    GT:AD:DP:GQ:PL    1/1:1,38:39:62.87:1219,63,0
10    104232809    rs3740414    T    G    514.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369931    GT:AD:DP:GQ:PL    1/1:0,18:18:45.11:548,45,0
10    104235799    rs68025122    G    GT    239.04    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=18;FS=10.227;HRun=8;HaplotypeScore=115.5999;IndelType=I;MQ=46.25;MQ0=0;MQRankSum=0.636;QD=13.28;ReadPosRankSum=-1.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369905    GT:AD:DP:GQ:PL    0/1:8,8:18:67.67:278,0,68
10    104235855    rs10883724    C    A    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=33.42;MQ0=0;QD=6.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369905    GT:AD:DP:GQ:PL    1/1:0,10:10:9.02:100,9,0
10    104241683    rs2296580    G    T    1146.57    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.441;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.767;QD=16.62;ReadPosRankSum=-0.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480947    GT:AD:DP:GQ:PL    0/1:34,35:69:99:1177,0,1122
10    104241983    rs12763720    T    C    192.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.032;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.334;QD=7.12;ReadPosRankSum=-0.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480947    GT:AD:DP:GQ:PL    0/1:18,9:27:99:222,0,651
10    104250278    rs17709610    A    G    233.36    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.187;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9623;MQ=59.14;MQ0=0;MQRankSum=0.87;QD=8.64;ReadPosRankSum=-0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369905    GT:AD:DP:GQ:PL    0/1:17,10:27:99:263,0,483
10    104264107    rs2274351    C    T    516.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=27.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUFU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369899    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:549,42,0
10    104268626    rs12767131    T    C    87.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUFU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369899    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
10    104268800    rs10748822    G    C    601.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUFU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369899    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:635,45,0
10    104269217    rs2281880    G    A    1276.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUFU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369899    GT:AD:DP:GQ:PL    1/1:0,32:32:96.32:1309,96,0
10    104356822    rs10786690    A    G    1019.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUFU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369899    GT:AD:DP:GQ:PL    1/1:0,32:32:93.25:1053,93,0
10    104387019    rs12414407    T    C    1478.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=31.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUFU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369902    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1512,123,0
10    104389932    rs4917980    T    G    1965.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=35.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUFU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369902    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1999,153,0
10    104415720    rs4274160    T    C    1396.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9983;MQ=56.1;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302424    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1429,114,0
10    104415810    rs144654418    GCTCTCCCTGGA    G    4310.13    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=8.79;DB;DP=148;FS=11.661;HRun=0;HaplotypeScore=1450.73;IndelType=D;MQ=53.76;MQ0=0;MQRankSum=-3.448;QD=29.12;ReadPosRankSum=-1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302424    GT:AD:DP:GQ:PL    0/1:92,56:148:99:4310,0,12530
10    104436859    rs182800184    C    A    138.88    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=11.57;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260746    GT:AD:DP:GQ:PL    0/1:7,5:12:99:169,0,241
10    104445368    rs3740606    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260746    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    104459079    rs59504153    TAA    T    741.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=56.1752;IndelType=D;MQ=60.67;MQ0=0;QD=46.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260746    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:783,48,0
10    104464970    rs12784517    T    C    344.63    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.085;QD=26.51;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260746    GT:AD:DP:GQ:PL    0/1:3,10:13:86.39:375,0,86
10    104465374    rs12761195    T    C    149.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.62;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260746    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,132
10    104473813    rs2248684    C    A    251.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260746    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
10    104474107    rs2248679    G    A    280.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=25.51;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369893    GT:AD:DP:GQ:PL    1/1:0,11:11:30.05:314,30,0
10    104486304    rs2244647    G    C    624.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369893    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:657,48,0
10    104486974    rs2244524    C    T    279.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=15.55;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369893    GT:AD:DP:GQ:PL    0/1:8,10:18:99:310,0,274
10    104487072    rs2244518    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369893    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    104488900    rs2244258    A    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369893    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    104488914    rs2244257    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369893    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    104489011    rs2244254    G    C    946.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369893    GT:AD:DP:GQ:PL    1/1:0,28:28:72.22:980,72,0
10    104492707    rs2778037    G    C    724.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=57.21;MQ0=0;QD=26.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473178    GT:AD:DP:GQ:PL    1/1:0,27:27:63.18:758,63,0
10    104493444    rs11191381    C    T    405.10    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=3.328;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.475;QD=19.29;ReadPosRankSum=0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473178    GT:AD:DP:GQ:PL    0/1:8,13:21:99:435,0,184
10    104545274    rs7080587    C    T    352.72    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.725;DB;DP=19;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=0.9916;MQ=58.78;MQ0=0;MQRankSum=-0.725;QD=18.56;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369889    GT:AD:DP:GQ:PL    0/1:7,11:19:99:383,0,197
10    104570096    rs76272587    C    T    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=11.69;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369889    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:65,0,29
10    104572276    rs284861    A    G    1539.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369889    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1572,117,0
10    104572963    rs284860    T    C    510.45    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.447;DB;DP=53;Dels=0.0;FS=2.745;HRun=2;HaplotypeScore=1.5226;MQ=57.79;MQ0=0;MQRankSum=-0.195;QD=9.63;ReadPosRankSum=-1.046;SNPEFF_AMINO_ACID_CHANGE=S302P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104572352_104576021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369889    GT:AD:DP:GQ:PL    0/1:28,25:53:99:540,0,813
10    104636655    rs3740393    G    C    1269.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=38.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299353    GT:AD:DP:GQ:PL    1/1:0,33:33:96.30:1302,96,0
10    104637992    rs10786719    A    G    443.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AS3MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369880    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:477,39,0
10    104650128    rs7085598    T    C    78.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AS3MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369880    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
10    104650251    rs7085854    T    C    761.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AS3MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369880    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:794,60,0
10    104660256    rs10748835    G    A    277.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AS3MT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369880    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:310,24,0
10    104678350    rs76057237    G    A    37.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=6.28;SNPEFF_AMINO_ACID_CHANGE=R38Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104678114_104679858;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345419    GT:AD:DP:GQ:PL    1/1:1,5:6:6.02:69,6,0
10    104679978    rs2297786    C    T    884.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345419    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:918,69,0
10    104814162    rs2275271    T    C    4200.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.873;DB;DP=122;Dels=0.0;FS=4.2;HRun=0;HaplotypeScore=2.8713;MQ=59.81;MQ0=0;MQRankSum=0.301;QD=34.43;ReadPosRankSum=-1.102;SNPEFF_AMINO_ACID_CHANGE=S614;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104814086_104814223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345419    GT:AD:DP:GQ:PL    1/1:1,121:122:99:4201,286,0
10    104816947    rs7908280    C    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345419    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
10    104836047    rs943036    T    C    547.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345419    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:581,48,0
10    104849468    rs3740387    G    A    1538.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5767;MQ=59.5;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=D520;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_104849342_104849665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423468    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1572,117,0
10    104850621    rs143410585    TAATA    T    2199.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=382.3866;IndelType=D;MQ=54.6;MQ0=0;QD=51.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469228    GT:AD:DP:GQ:PL    1/1:3,40:43:99:2242,123,0
10    104850632    rs3736922    G    A    1375.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.18;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469228    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1409,114,0
10    104851285    rs10883830    G    A    1679    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469228    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1712,126,0
10    104851396    rs11191553    G    T    1678.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469228    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1711,123,0
10    104854004    rs60341061    T    TA    162.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=12;HaplotypeScore=50.8623;IndelType=I;MQ=52.23;MQ0=0;QD=20.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369853    GT:AD:DP:GQ:PL    1/1:1,7:8:21.03:204,21,0
10    104855656    rs1926030    T    C    1810.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369853    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1843,135,0
10    104855670    rs1926029    G    A    1985.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=32.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369853    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2019,147,0
10    105048217    rs34440112    A    C    1909.36    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.544;DB;DP=135;Dels=0.0;FS=1.419;HRun=0;HaplotypeScore=1.7791;MQ=59.83;MQ0=0;MQRankSum=-1.15;QD=14.14;ReadPosRankSum=1.503;SNPEFF_AMINO_ACID_CHANGE=I431L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105048117_105050108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369849    GT:AD:DP:GQ:PL    0/1:63,71:135:99:1939,0,1843
10    105141345    .    TAA    T    304.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DP=18;FS=0.0;HRun=4;HaplotypeScore=54.4869;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=16.92;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351396    GT:AD:DP:GQ:PL    0/1:9,9:18:99:344,0,452
10    105144986    rs7069667    A    G    324.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USMG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309579    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:357,27,0
10    105165615    rs7919031    G    A    551.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=34.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471061    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:585,48,0
10    105178031    rs74646973    G    A    111.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.99;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369797    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,123
10    105194086    rs2986014    C    T    1060.30    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.865;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5095;MQ=59.74;MQ0=0;MQRankSum=-2.042;QD=12.19;ReadPosRankSum=-1.575;SNPEFF_AMINO_ACID_CHANGE=L1216F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105194005_105194107;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369797    GT:AD:DP:GQ:PL    0/1:44,43:87:99:1090,0,1313
10    105201577    rs2281860    C    T    227.49    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=1.146;DB;DP=37;Dels=0.0;FS=1.38;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.183;QD=6.15;ReadPosRankSum=-0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260743    GT:AD:DP:GQ:PL    0/1:26,11:37:99:257,0,830
10    105203193    rs79478408    C    A    61.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=6.84;ReadPosRankSum=2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260743    GT:AD:DP:GQ:PL    0/1:6,3:9:91.58:92,0,192
10    105203785    rs41302735    C    T    609.28    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.718;DB;DP=37;Dels=0.0;FS=7.105;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.724;QD=16.47;ReadPosRankSum=2.262;SNPEFF_AMINO_ACID_CHANGE=R1746;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105203672_105203825;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369797    GT:AD:DP:GQ:PL    0/1:19,18:37:99:639,0,427
10    105204454    rs942900    T    C    415.37    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.944;DB;DP=39;Dels=0.0;FS=7.72;HRun=1;HaplotypeScore=0.9958;MQ=58.81;MQ0=0;MQRankSum=-0.19;QD=10.65;ReadPosRankSum=0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260743    GT:AD:DP:GQ:PL    0/1:20,19:39:99:445,0,499
10    105206874    rs6580    T    C    248.26    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.454;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.625;QD=14.6;ReadPosRankSum=-0.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393235    GT:AD:DP:GQ:PL    0/1:8,9:17:99:278,0,254
10    105207301    rs2232662    C    T    163.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.011;DB;DP=21;Dels=0.0;FS=8.495;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=7.8;ReadPosRankSum=-1.268;SNPEFF_AMINO_ACID_CHANGE=V194M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105206546_105207325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260743    GT:AD:DP:GQ:PL    0/1:14,7:21:99:194,0,343
10    105215016    rs2986016    A    G    142.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260743    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
10    105215091    rs41287500    C    T    231.45    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9664;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=23.15;ReadPosRankSum=-1.271;SNPEFF_AMINO_ACID_CHANGE=M323I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105213144_105215504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329905    GT:AD:DP:GQ:PL    0/1:2,8:10:56.43:261,0,56
10    105215216    rs41287502    C    A    200.49    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=17;Dels=0.0;FS=13.03;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=11.79;ReadPosRankSum=0.144;SNPEFF_AMINO_ACID_CHANGE=G282C;SNPEFF_CODON_CHANGE=Ggt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105213144_105215504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329905    GT:AD:DP:GQ:PL    0/1:9,8:17:99:230,0,287
10    105218359    rs2986018    T    C    337.22    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=26;Dels=0.0;FS=3.442;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=1.414;QD=12.97;ReadPosRankSum=0.489;SNPEFF_AMINO_ACID_CHANGE=A50;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105217954_105218645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329905    GT:AD:DP:GQ:PL    0/1:12,14:26:99:367,0,335
10    105233110    rs2986035    C    T    41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.67;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=D299N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105232561_105233461;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369783    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:71,0,25
10    105235925    rs3014199    T    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALHM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369783    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
10    105330397    rs11191731    C    A    352.54    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-2.324;QD=17.63;ReadPosRankSum=-0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEURL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369777    GT:AD:DP:GQ:PL    0/1:6,14:20:99:383,0,175
10    105361816    rs4918031    T    G    708.77    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.684;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.046;QD=13.63;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=I1025;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105353786_105363546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355946    GT:AD:DP:GQ:PL    0/1:25,27:52:99:739,0,762
10    105362179    rs3740473    G    A    671.92    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.609;DB;DP=60;Dels=0.0;FS=2.245;HRun=0;HaplotypeScore=0.9578;MQ=59.62;MQ0=0;MQRankSum=-0.9;QD=11.2;ReadPosRankSum=0.24;SNPEFF_AMINO_ACID_CHANGE=R739;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105359277_105363546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315994    GT:AD:DP:GQ:PL    0/1:35,25:60:99:702,0,1064
10    105362209    rs4917396    T    C    765.60    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.337;DB;DP=68;Dels=0.0;FS=8.548;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.528;QD=11.26;ReadPosRankSum=0.388;SNPEFF_AMINO_ACID_CHANGE=K729;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105359277_105363546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315994    GT:AD:DP:GQ:PL    0/1:40,28:68:99:796,0,1288
10    105362287    rs3740472    C    G    589.16    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=48;Dels=0.0;FS=9.137;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.293;QD=12.27;ReadPosRankSum=-0.921;SNPEFF_AMINO_ACID_CHANGE=L703;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105359277_105363546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315994    GT:AD:DP:GQ:PL    0/1:29,19:48:99:619,0,904
10    105365386    rs7088714    A    G    90.15    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=15.03;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315994    GT:AD:DP:GQ:PL    0/1:2,4:6:55.73:120,0,56
10    105483964    rs12220667    A    G    128.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=16.1;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355946    GT:AD:DP:GQ:PL    0/1:2,6:8:62.93:159,0,63
10    105495612    rs6584568    T    C    1287.28    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=132;Dels=0.0;FS=2.703;HRun=1;HaplotypeScore=2.911;MQ=59.83;MQ0=0;MQRankSum=1.173;QD=9.75;ReadPosRankSum=-0.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3PXD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355946    GT:AD:DP:GQ:PL    0/1:81,51:132:99:1317,0,2403
10    105727656    rs67597452    AAG    A    645.13    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=3.601;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=126.0159;IndelType=D;MQ=59.73;MQ0=0;MQRankSum=0.684;QD=16.54;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    0/1:21,18:39:99:684,0,911
10    105727874    rs4917407    A    G    35.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
10    105753058    rs11191894    A    G    154.35    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.62;MQ0=0;MQRankSum=1.495;QD=22.05;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    0/1:2,5:7:34.06:184,0,34
10    105758670    rs10883960    A    G    460.29    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.161;QD=10.46;ReadPosRankSum=-0.981;SNPEFF_AMINO_ACID_CHANGE=V176;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105758657_105758729;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    0/1:26,18:44:99:490,0,816
10    105761793    rs805656    G    A    123.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
10    105763026    rs3740469    C    T    1258.44    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=88;Dels=0.0;FS=5.27;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.409;QD=14.3;ReadPosRankSum=-1.094;SNPEFF_AMINO_ACID_CHANGE=T697I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105761930_105763285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    0/1:45,43:88:99:1288,0,1345
10    105768158    rs805664    A    T    392.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    1/1:0,18:18:42.08:426,42,0
10    105781532    rs10883961    C    T    321.47    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=15.31;ReadPosRankSum=0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474260    GT:AD:DP:GQ:PL    0/1:10,11:21:99:351,0,287
10    105793173    rs1747675    T    G    264.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:298,24,0
10    105793459    rs2147268    C    T    162.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
10    105793587    rs11596192    C    A    533.04    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.994;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.771;QD=13.0;ReadPosRankSum=0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335753    GT:AD:DP:GQ:PL    0/1:22,19:41:99:563,0,780
10    105793750    rs17116350    T    C    1317.82    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.034;DB;DP=91;Dels=0.0;FS=3.052;HRun=1;HaplotypeScore=0.8321;MQ=59.75;MQ0=0;MQRankSum=0.739;QD=14.48;ReadPosRankSum=0.013;SNPEFF_AMINO_ACID_CHANGE=D1288G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105793703_105794092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369733    GT:AD:DP:GQ:PL    0/1:44,47:91:99:1348,0,1306
10    105796399    rs2274098    G    C    197.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:230,18,0
10    105796449    rs2476957    A    G    171.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
10    105796738    rs805714    A    C    299.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:333,24,0
10    105796819    rs2476958    A    G    382.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.3;SNPEFF_AMINO_ACID_CHANGE=I1042;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105796803_105796871;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369733    GT:AD:DP:GQ:PL    1/1:0,14:14:33.08:415,33,0
10    105797175    rs2282436    C    A    121.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
10    105797378    rs2282437    G    A    844.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.22;MQ0=0;QD=29.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,29:29:63.21:877,63,0
10    105797989    rs72307748    TACACACACACACACACACAC    T    4878.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.0;HRun=0;HaplotypeScore=1339.0191;IndelType=D;MQ=47.73;MQ0=0;QD=66.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:20,53:73:99:4879,162,0
10    105798872    rs2274100    T    C    1721.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=30.2;SNPEFF_AMINO_ACID_CHANGE=P923;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105798829_105798879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369733    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1755,141,0
10    105799216    rs2296219    G    T    983.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_AMINO_ACID_CHANGE=P961;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105799203_105799277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,36:37:81.25:1016,81,0
10    105799599    rs11191905    C    A    172.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
10    105800321    rs12763538    C    T    81.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.25;MQ0=0;QD=20.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
10    105800893    rs34260939    C    T    76.99    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=33;Dels=0.0;FS=2.032;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.571;QD=2.33;ReadPosRankSum=1.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    0/1:28,5:33:99:107,0,895
10    105801253    rs4918079    G    A    380.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_AMINO_ACID_CHANGE=R865;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105801243_105801296;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,14:15:30.10:413,30,0
10    105805310    rs805719    G    A    83.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
10    105805436    rs805720    G    A    1142.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1176,90,0
10    105805497    rs813944    C    T    1627.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1661,123,0
10    105810400    rs805722    T    C    1104.21    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.674;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.422;QD=13.47;ReadPosRankSum=-1.34;SNPEFF_AMINO_ACID_CHANGE=M703V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105810379_105810414;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    0/1:42,40:82:99:1134,0,1194
10    105811668    rs805724    G    A    31.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480127    GT:AD:DP:GQ:PL    0/1:4,2:6:61.90:62,0,137
10    105812690    rs2274101    G    C    336.78    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=0.882;DB;DP=33;Dels=0.0;FS=2.927;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.384;QD=10.21;ReadPosRankSum=-0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480127    GT:AD:DP:GQ:PL    0/1:20,13:33:99:367,0,675
10    105813001    rs11191909    C    T    106.95    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=15.28;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480127    GT:AD:DP:GQ:PL    0/1:2,5:7:66.35:137,0,66
10    105814826    rs805691    C    A    146.54    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DB;DP=22;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.668;QD=6.66;ReadPosRankSum=-0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393211    GT:AD:DP:GQ:PL    0/1:13,9:22:99:177,0,412
10    105814937    rs805692    C    T    240.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=14;Dels=0.0;FS=15.911;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.468;QD=17.21;ReadPosRankSum=-0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393211    GT:AD:DP:GQ:PL    0/1:6,8:14:99:271,0,204
10    105815202    .    T    TCA    547.57    PASS    AC=2;AF=1.00;AN=2;DP=38;FS=0.0;HRun=0;HaplotypeScore=298.4204;IndelType=I;MQ=52.37;MQ0=0;QD=14.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393211    GT:AD:DP:GQ:PL    1/1:21,10:38:51.04:590,51,0
10    105815454    rs805694    G    A    192.40    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.141;QD=16.03;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393211    GT:AD:DP:GQ:PL    0/1:5,7:12:99:222,0,151
10    105816685    rs805696    T    C    126.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393211    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
10    105816916    rs805698    C    T    2519.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9581;MQ=59.42;MQ0=0;MQRankSum=-1.386;QD=34.99;ReadPosRankSum=1.386;SNPEFF_AMINO_ACID_CHANGE=G412S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105816733_105816930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541872    GT:AD:DP:GQ:PL    1/1:1,70:72:99:2552,187,0
10    105817043    rs805699    C    T    2651.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=33.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393211    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2685,202,0
10    105817891    rs11191910    G    A    243.32    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=-1.147;QD=10.58;ReadPosRankSum=1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393211    GT:AD:DP:GQ:PL    0/1:13,10:23:99:273,0,358
10    105819198    rs805700    A    G    291.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488320    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
10    105819956    rs805701    G    A    577.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=42;Dels=0.0;FS=1.216;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.277;QD=13.75;ReadPosRankSum=-0.226;SNPEFF_AMINO_ACID_CHANGE=A338;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105819877_105820038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541872    GT:AD:DP:GQ:PL    0/1:21,21:42:99:608,0,659
10    105821136    rs805704    A    T    413.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:446,36,0
10    105821294    rs805705    A    G    264.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353479    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:297,24,0
10    105824333    rs805708    G    A    199.95    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=22.22;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=T194M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_105824196_105824354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL17A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541872    GT:AD:DP:GQ:PL    0/1:2,7:9:44.55:230,0,45
10    105883395    rs1338777    A    C    298.83    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.721;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=2.083;QD=15.73;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463224    GT:AD:DP:GQ:PL    0/1:7,12:19:99:329,0,197
10    105890184    rs12260034    G    A    149.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=16.64;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SFR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336358    GT:AD:DP:GQ:PL    0/1:3,6:9:93.76:180,0,94
10    105920661    rs10786785    A    T    248.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=15.54;ReadPosRankSum=0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357060    GT:AD:DP:GQ:PL    0/1:8,8:16:99:279,0,290
10    105927104    rs10748861    T    C    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    105932074    rs626708    C    T    254.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=12.74;ReadPosRankSum=0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:10,10:20:99:285,0,361
10    105938913    rs112387723    CAG    C    198.54    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=78.427;IndelType=D;MQ=60.45;MQ0=0;MQRankSum=-0.706;QD=8.27;ReadPosRankSum=1.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:15,8:24:99:238,0,370
10    105939451    rs624159    C    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    105942304    rs569856    T    C    419.22    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=1.018;QD=11.33;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:23,14:37:99:449,0,763
10    105942337    rs569967    G    C    192.92    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=9.65;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:13,7:20:99:223,0,478
10    105945985    rs479879    A    C    376.94    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.482;QD=19.84;ReadPosRankSum=0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:6,13:19:99:407,0,192
10    105956776    rs584309    A    G    181.27    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=13.94;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:7,6:13:99:211,0,250
10    105957561    rs678292    G    A    69.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.97;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:2,3:5:65.76:100,0,66
10    105957613    rs677904    G    A    215.61    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DB;DP=19;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=11.35;ReadPosRankSum=-0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:8,11:19:99:246,0,289
10    105967624    rs11191948    C    T    154.65    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.449;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.024;QD=5.95;ReadPosRankSum=-1.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:17,9:26:99:185,0,548
10    105973981    rs584082    C    G    697.25    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.205;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;MQRankSum=-1.302;QD=15.85;ReadPosRankSum=-0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    0/1:17,27:44:99:727,0,516
10    105991884    rs789577    T    G    188.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278064    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:222,18,0
10    106022789    rs4925    C    A    328.81    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.304;DB;DP=20;Dels=0.0;FS=3.916;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.519;QD=16.44;ReadPosRankSum=0.912;SNPEFF_AMINO_ACID_CHANGE=A112D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_106022737_106022835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GSTO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445155    GT:AD:DP:GQ:PL    0/1:9,11:20:99:359,0,309
10    106037894    rs157077    T    C    226.33    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=12;Dels=0.0;FS=5.643;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.106;QD=18.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338595    GT:AD:DP:GQ:PL    0/1:3,9:12:87.56:256,0,88
10    106039185    rs156697    A    G    643.07    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=61;Dels=0.0;FS=7.314;HRun=0;HaplotypeScore=0.9973;MQ=59.31;MQ0=0;MQRankSum=0.27;QD=10.54;ReadPosRankSum=0.62;SNPEFF_AMINO_ACID_CHANGE=N114D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_106039128_106039229;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369707    GT:AD:DP:GQ:PL    0/1:35,26:61:99:673,0,1044
10    106039303    rs276203    A    G    136.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=9.78;ReadPosRankSum=0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338595    GT:AD:DP:GQ:PL    0/1:8,6:14:99:167,0,276
10    106058778    rs157079    T    C    294.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338595    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:327,27,0
10    106074505    rs151096173    C    T    318.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.227;DB;DP=33;Dels=0.0;FS=3.542;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=9.67;ReadPosRankSum=-1.394;SNPEFF_AMINO_ACID_CHANGE=T435;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_106071901_106075822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPRIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278071    GT:AD:DP:GQ:PL    0/1:22,11:33:99:349,0,647
10    106097934    rs35497851    A    G    118.71    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=10.79;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337478    GT:AD:DP:GQ:PL    0/1:6,5:11:99:149,0,178
10    106124660    rs12769756    G    T    244.75    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.367;QD=12.88;ReadPosRankSum=-0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312902    GT:AD:DP:GQ:PL    0/1:9,10:19:99:275,0,282
10    106152111    rs11192036    T    A    2023.45    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.446;DB;DP=133;Dels=0.0;FS=3.378;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=15.21;ReadPosRankSum=0.448;SNPEFF_AMINO_ACID_CHANGE=S496T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_106151991_106152152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC147;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369704    GT:AD:DP:GQ:PL    0/1:67,66:133:99:2053,0,2050
10    106159305    rs10509772    G    A    535.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369704    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:569,42,0
10    106160731    rs41317250    T    C    136.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.14;QD=7.56;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369704    GT:AD:DP:GQ:PL    0/1:12,6:18:99:166,0,435
10    106166570    rs10786792    G    A    1313.12    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.844;DB;DP=87;Dels=0.0;FS=1.82;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-1.665;QD=15.09;ReadPosRankSum=-1.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369704    GT:AD:DP:GQ:PL    0/1:47,40:87:99:1343,0,1601
10    106207269    rs1411711    G    C    73.92    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.474;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.71;MQ0=0;MQRankSum=0.369;QD=4.11;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369704    GT:AD:DP:GQ:PL    0/1:13,5:18:99:104,0,437
10    106207451    rs12766595    A    T    895.76    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.144;DB;DP=68;Dels=0.0;FS=0.93;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-2.095;QD=13.17;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC147;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369704    GT:AD:DP:GQ:PL    0/1:36,32:68:99:926,0,987
10    106582029    rs1490182    C    T    56.65    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=3.54;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369701    GT:AD:DP:GQ:PL    0/1:10,6:16:86.64:87,0,317
10    106602496    rs77980249    C    CT    352.42    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.607;DB;DP=33;FS=0.0;HRun=6;HaplotypeScore=78.9409;IndelType=I;MQ=59.76;MQ0=0;MQRankSum=1.189;QD=10.68;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369701    GT:AD:DP:GQ:PL    0/1:20,13:33:99:391,0,485
10    107022382    rs2418750    T    G    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369701    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
10    108371571    rs150291171    A    AGTTT    446.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=29.0041;IndelType=I;MQ=51.36;MQ0=0;QD=55.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:1,6:8:21.07:489,21,0
10    108380213    rs4917481    G    A    1112.73    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.804;DB;DP=79;Dels=0.0;FS=4.403;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.165;QD=14.09;ReadPosRankSum=0.445;SNPEFF_AMINO_ACID_CHANGE=Y458;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_108380186_108380319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369698    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1143,0,1130
10    108389111    rs3802553    A    G    431.01    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.916;DB;DP=22;Dels=0.0;FS=4.193;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.352;QD=19.59;ReadPosRankSum=0.423;SNPEFF_AMINO_ACID_CHANGE=F372;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_108388960_108389146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369698    GT:AD:DP:GQ:PL    0/1:7,15:22:99:461,0,224
10    108389218    rs8181286    C    T    190    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.001;QD=19.0;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    0/1:3,7:10:61.78:220,0,62
10    108389249    rs1322004    T    C    134.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=22.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:167,15,0
10    108427594    rs17121157    A    T    197.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=24.73;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    0/1:2,6:8:60.38:228,0,60
10    108427624    rs12412558    A    G    147.83    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.64;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    0/1:1,5:6:20.52:178,0,21
10    108427644    rs12415278    C    T    94.41    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=18.88;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    0/1:1,4:5:22.76:124,0,23
10    108432828    rs11193010    C    T    103.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.26;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    0/1:2,4:6:63.90:134,0,64
10    108439103    rs821929    A    C    1402.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1436,117,0
10    108447836    rs821935    C    T    1001.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=38.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1035,78,0
10    108448200    rs1252035    C    T    296.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:330,24,0
10    108466412    rs2756231    C    T    1118.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1151,84,0
10    108469161    rs2756232    C    G    484.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:517,39,0
10    108521566    rs1890457    A    G    91.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    108716473    rs822090    A    G    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
10    108923704    rs2993097    A    G    610.62    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.602;DB;DP=34;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=2.8189;MQ=56.79;MQ0=0;MQRankSum=0.061;QD=17.96;ReadPosRankSum=-0.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263054    GT:AD:DP:GQ:PL    0/1:12,20:34:99:641,0,313
10    109181299    rs7076958    A    G    294.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.78;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:328,27,0
10    111625108    rs483072    T    C    532.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XPNPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494499    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:566,42,0
10    111631665    rs2274978    C    G    943.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XPNPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472336    GT:AD:DP:GQ:PL    1/1:0,29:29:72.21:977,72,0
10    111631781    rs2274979    G    A    123.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XPNPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472336    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
10    111632937    rs3740140    T    G    57.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=14.29;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XPNPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460055    GT:AD:DP:GQ:PL    0/1:1,3:4:29.73:87,0,30
10    111637635    rs2273740    A    C    1479.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XPNPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403138    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1512,114,0
10    111652610    rs3737153    A    G    91.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XPNPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322238    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:124,12,0
10    111667664    rs944969    T    C    1186    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.348;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=58.71;MQ0=0;MQRankSum=0.674;QD=32.94;ReadPosRankSum=-1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XPNPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322238    GT:AD:DP:GQ:PL    1/1:1,35:36:61.06:1219,61,0
10    111667702    rs686155    T    C    534.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XPNPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322238    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:568,45,0
10    111706856    rs12569906    A    T    31.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-451M19.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369654    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
10    111878510    rs12268910    T    G    325.06    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=19;Dels=0.0;FS=3.139;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=17.11;ReadPosRankSum=-2.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468251    GT:AD:DP:GQ:PL    0/1:8,11:19:99:355,0,267
10    111886089    rs3731566    G    A    403.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486014    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:436,33,0
10    111890362    rs13306109    C    A    30.82    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=3.85;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472568    GT:AD:DP:GQ:PL    0/1:5,3:8:60.81:61,0,184
10    111987960    rs61745504    C    T    802.09    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.837;DB;DP=58;Dels=0.0;FS=2.533;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=13.83;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G29;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_111987947_111988079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239007    GT:AD:DP:GQ:PL    0/1:27,31:58:99:832,0,715
10    111988179    rs111835482    A    T    73.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.21;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239007    GT:AD:DP:GQ:PL    0/1:3,3:6:95.78:103,0,96
10    112004481    rs113816392    T    C    181.70    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.742;QD=25.96;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239007    GT:AD:DP:GQ:PL    0/1:1,6:7:19.58:212,0,20
10    112044553    rs5787843    G    GTTC    2143.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=218.9822;IndelType=I;MQ=56.56;MQ0=0;QD=48.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442296    GT:AD:DP:GQ:PL    1/1:5,35:44:99:2186,117,0
10    112054908    rs7074311    C    A    1201.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460483    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1234,93,0
10    112058426    rs2233934    T    C    619.79    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.654;DB;DP=41;Dels=0.0;FS=9.328;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.301;QD=15.12;ReadPosRankSum=1.373;SNPEFF_AMINO_ACID_CHANGE=A81;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_112058406_112058548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369592    GT:AD:DP:GQ:PL    0/1:19,22:41:99:650,0,603
10    112063033    rs113673038    C    A    435.68    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.636;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.763;QD=12.81;ReadPosRankSum=-0.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369592    GT:AD:DP:GQ:PL    0/1:19,15:34:99:466,0,665
10    112063216    rs2233931    C    G    2449.09    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.724;DB;DP=199;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8935;MQ=59.65;MQ0=0;MQRankSum=-0.314;QD=12.31;ReadPosRankSum=0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369592    GT:AD:DP:GQ:PL    0/1:102,97:199:99:2479,0,3103
10    112211015    rs7089104    A    C    304.15    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=34;Dels=0.0;FS=1.897;HRun=0;HaplotypeScore=1.9992;MQ=56.2;MQ0=0;MQRankSum=0.465;QD=8.95;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HMGB3P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428894    GT:AD:DP:GQ:PL    0/1:10,24:34:99:334,0,120
10    112211051    rs7089341    C    A    1444.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.96;MQ0=0;QD=28.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HMGB3P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428894    GT:AD:DP:GQ:PL    1/1:1,50:51:99:1478,117,0
10    112257999    .    C    T    385.84    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DP=30;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=57.01;MQ0=0;MQRankSum=-0.207;QD=12.86;ReadPosRankSum=-0.85;SNPEFF_AMINO_ACID_CHANGE=R40;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_112257596_112258258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369583    GT:AD:DP:GQ:PL    0/1:16,14:30:99:416,0,368
10    112266822    rs1889566    G    A    4587.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=201;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=59.66;MQ0=0;QD=22.82;SNPEFF_AMINO_ACID_CHANGE=A220T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_112266693_112266912;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369583    GT:AD:DP:GQ:PL    1/1:0,201:201:99:4587,477,0
10    112266823    rs1889565    C    T    4616.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=59.65;MQ0=0;QD=23.08;SNPEFF_AMINO_ACID_CHANGE=A220V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_112266693_112266912;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369583    GT:AD:DP:GQ:PL    1/1:0,199:200:99:4617,477,0
10    112327678    rs55750861    C    CA    389.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=20.8928;IndelType=I;MQ=60.0;MQ0=0;QD=43.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:431,27,0
10    112328838    rs4917577    C    G    632.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:666,48,0
10    112333272    rs7083749    G    A    131.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
10    112333333    .    C    CTGT    470.80    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=36.8077;IndelType=I;MQ=54.49;MQ0=0;QD=52.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:1,5:9:24.08:513,24,0
10    112356331    rs7075340    G    A    1259.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1292,99,0
10    112359740    rs1890920    A    T    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
10    112360002    rs1890921    G    A    289.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
10    112361870    rs2419565    A    G    2160.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9411;MQ=60.0;MQ0=0;MQRankSum=1.306;QD=32.73;ReadPosRankSum=1.572;SNPEFF_AMINO_ACID_CHANGE=S1013;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_112361724_112361936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2193,172,0
10    112362019    rs2039874    G    T    412.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361804    GT:AD:DP:GQ:PL    1/1:0,18:18:36.11:445,36,0
10    112541676    rs61862866    T    C    798.20    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.051;QD=13.76;ReadPosRankSum=-1.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369519    GT:AD:DP:GQ:PL    0/1:26,32:58:99:828,0,799
10    112541678    rs61862867    G    A    803.04    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.906;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-0.235;QD=14.6;ReadPosRankSum=-1.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369519    GT:AD:DP:GQ:PL    0/1:25,30:55:99:833,0,825
10    112543217    rs6585012    G    A    283.08    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.612;QD=14.9;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369519    GT:AD:DP:GQ:PL    0/1:10,9:19:99:313,0,345
10    112559414    rs7086886    G    A    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369519    GT:AD:DP:GQ:PL    0/1:3,3:6:92.33:103,0,92
10    112570243    rs11195338    T    C    313.57    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.279;DB;DP=23;Dels=0.0;FS=1.871;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.775;QD=13.63;ReadPosRankSum=0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369519    GT:AD:DP:GQ:PL    0/1:10,13:23:99:344,0,244
10    112572458    rs1417635    G    C    510.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=W768S;SNPEFF_CODON_CHANGE=tGg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_112572036_112572705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369519    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:544,45,0
10    112579663    rs11195343    C    T    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369519    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
10    112583189    rs72145535    CTTTTTTTTTTTTTT    C    1334.26    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.576;DB;DP=34;FS=0.0;HRun=27;HaplotypeScore=483.8717;IndelType=D;MQ=41.23;MQ0=0;MQRankSum=-0.158;QD=39.24;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369519    GT:AD:DP:GQ:PL    0/1:10,16:34:28.91:1373,0,29
10    112641053    rs7081726    A    G    3903.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=33.37;SNPEFF_AMINO_ACID_CHANGE=I22V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_112641033_112641293;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444997    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3904,289,0
10    112650055    rs6585021    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444997    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    112764594    rs1980869    T    C    365.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265277    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:399,30,0
10    112768850    rs7904892    A    C    200.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265277    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:233,18,0
10    113913222    rs2297991    T    C    3108.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5747;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369425    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3141,235,0
10    113913552    rs1807800    A    T    82.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369425    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
10    113915574    rs72299852    C    CA    221.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=14;HaplotypeScore=35.0511;IndelType=I;MQ=60.73;MQ0=0;QD=17.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:2,11:13:29.64:263,30,0
10    113916835    rs2254532    A    C    246.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
10    113917085    rs2254537    T    A    1761.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.14;MQ0=0;QD=33.23;SNPEFF_AMINO_ACID_CHANGE=P681;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_113917007_113917147;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1794,132,0
10    113917833    rs6585139    T    C    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    113917982    rs6585140    C    G    1258.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1291,99,0
10    113920465    rs2277207    G    A    1204.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=N552;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_113920362_113920626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,36:37:93.28:1238,93,0
10    113920652    rs3824626    T    C    853.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:887,69,0
10    113921159    rs2792736    T    A    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
10    113921354    rs2250802    G    A    245.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.31;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:278,24,0
10    113923595    rs10736219    C    G    2752.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.73;MQ0=0;QD=32.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,84:85:99:2786,199,0
10    113926012    rs10749108    G    A    166.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
10    113928487    rs2251579    A    C    185.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:219,18,0
10    113928903    rs2803616    A    C    141.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:174,15,0
10    113935379    rs10787428    T    C    2656.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.74;MQ0=0;QD=29.52;SNPEFF_AMINO_ACID_CHANGE=E131G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_113935358_113935471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2689,211,0
10    113937941    rs2487294    G    T    405.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.05;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480130    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:438,33,0
10    113940329    rs2792751    T    C    1703.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=I43V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_113940231_113940353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348367    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1737,138,0
10    114061979    rs10749114    G    A    1078.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.108;QD=33.71;ReadPosRankSum=-1.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369422    GT:AD:DP:GQ:PL    1/1:1,31:32:45.06:1112,45,0
10    114154815    rs11195943    C    T    761.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.043;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.07;MQ0=0;MQRankSum=0.186;QD=16.93;ReadPosRankSum=-0.733;SNPEFF_AMINO_ACID_CHANGE=P37;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_114154676_114154860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354273    GT:AD:DP:GQ:PL    0/1:18,27:45:99:792,0,464
10    114169276    rs3736946    A    G    845.93    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.775;DB;DP=65;Dels=0.0;FS=5.369;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.048;QD=13.01;ReadPosRankSum=0.712;SNPEFF_AMINO_ACID_CHANGE=M182V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_114169265_114169443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354273    GT:AD:DP:GQ:PL    0/1:34,31:65:99:876,0,1029
10    114169552    rs7919710    G    A    406.67    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.079;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.396;QD=20.33;ReadPosRankSum=-0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479936    GT:AD:DP:GQ:PL    0/1:7,13:20:99:437,0,228
10    114169664    rs7904918    T    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479936    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:75,0,33
10    114181683    rs2255740    A    G    965.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=35.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467340    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:999,75,0
10    114185856    rs77915719    T    TG    174.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=9.0756;IndelType=I;MQ=62.13;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495539    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:216,15,0
10    114186624    rs2256368    G    A    772.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=29.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496328    GT:AD:DP:GQ:PL    1/1:0,26:26:60.19:805,60,0
10    114224502    rs3740143    C    G    257.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VTI1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393077    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
10    114849353    rs10749127    C    T    540.50    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=4.257;DB;DP=41;Dels=0.0;FS=7.405;HRun=0;HaplotypeScore=0.9665;MQ=59.54;MQ0=0;MQRankSum=1.531;QD=13.18;ReadPosRankSum=-0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF7L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346198    GT:AD:DP:GQ:PL    0/1:21,20:41:99:570,0,606
10    114901194    rs113107748    TG    T    161.28    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=19;FS=3.68;HRun=7;HaplotypeScore=103.0222;IndelType=D;MQ=59.36;MQ0=0;MQRankSum=0.471;QD=8.49;ReadPosRankSum=1.468;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF7L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346198    GT:AD:DP:GQ:PL    0/1:11,8:19:99:200,0,181
10    114911079    rs176632    T    C    72.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF7L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277945    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
10    115312811    rs2240879    T    C    63.02    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.648;DB;DP=19;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=3.32;ReadPosRankSum=-1.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542051    GT:AD:DP:GQ:PL    0/1:12,7:19:93.02:93,0,447
10    115327084    rs11575668    A    G    40.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351270    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:70,0,26
10    115334124    rs3740530    C    T    1223.76    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.5;DB;DP=103;Dels=0.0;FS=5.058;HRun=0;HaplotypeScore=0.8941;MQ=59.78;MQ0=0;MQRankSum=1.435;QD=11.88;ReadPosRankSum=-0.792;SNPEFF_AMINO_ACID_CHANGE=T50M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115334048_115334164;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537906    GT:AD:DP:GQ:PL    0/1:55,48:103:99:1254,0,1650
10    115334306    rs7090772    T    C    42.70    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=58.2;MQ0=0;MQRankSum=-1.606;QD=3.28;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460714    GT:AD:DP:GQ:PL    0/1:10,3:13:72.69:73,0,369
10    115335843    rs911709    A    G    572.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351270    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:606,45,0
10    115336758    rs2302374    A    C    37.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.44;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351270    GT:AD:DP:GQ:PL    0/1:3,2:5:67.19:67,0,109
10    115337538    rs1885436    C    G    169.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351270    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
10    115338305    rs2286744    T    C    1108.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351270    GT:AD:DP:GQ:PL    1/1:0,29:29:87.25:1142,87,0
10    115338615    rs11575684    A    G    496.36    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.162;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.487;QD=17.73;ReadPosRankSum=-0.812;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537906    GT:AD:DP:GQ:PL    0/1:12,16:28:99:526,0,337
10    115340492    rs2286742    G    A    484.43    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.449;QD=11.27;ReadPosRankSum=-0.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537906    GT:AD:DP:GQ:PL    0/1:23,20:43:99:514,0,783
10    115341545    rs2181082    G    C    1128.53    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=1.426;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.062;QD=18.5;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537906    GT:AD:DP:GQ:PL    0/1:28,33:61:99:1159,0,937
10    115341753    rs2245056    G    A    1353.09    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.068;DB;DP=95;Dels=0.0;FS=2.068;HRun=2;HaplotypeScore=0.8321;MQ=59.02;MQ0=0;MQRankSum=-0.658;QD=14.24;ReadPosRankSum=-1.18;SNPEFF_AMINO_ACID_CHANGE=K293;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115341635_115341890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542051    GT:AD:DP:GQ:PL    0/1:48,47:95:99:1383,0,1585
10    115341846    rs2245058    G    A    524.67    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.949;DB;DP=27;Dels=0.0;FS=2.049;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.765;QD=19.43;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=A324;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115341635_115341890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542051    GT:AD:DP:GQ:PL    0/1:11,16:27:99:555,0,354
10    115343287    rs2302373    C    T    168.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537906    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
10    115343803    rs911703    C    T    122.45    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=20.41;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541666    GT:AD:DP:GQ:PL    0/1:1,5:6:24.20:152,0,24
10    115343831    rs911701    A    T    307.86    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=23.68;ReadPosRankSum=0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541666    GT:AD:DP:GQ:PL    0/1:4,9:13:89.20:338,0,89
10    115343852    rs911700    C    G    276.47    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=19.75;ReadPosRankSum=-0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541666    GT:AD:DP:GQ:PL    0/1:4,10:14:92.18:306,0,92
10    115345850    rs3781378    T    C    258.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=23.48;ReadPosRankSum=-0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541666    GT:AD:DP:GQ:PL    1/1:1,10:11:4.39:289,4,0
10    115348726    rs3832698    GA    G    1817.67    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=7.406;DB;DP=110;FS=2.645;HRun=1;HaplotypeScore=274.3789;IndelType=D;MQ=59.78;MQ0=0;MQRankSum=-1.257;QD=16.52;ReadPosRankSum=2.001;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351270    GT:AD:DP:GQ:PL    0/1:57,53:110:99:1857,0,2337
10    115348916    rs10885478    G    A    356.39    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.99;MQ0=0;MQRankSum=-0.157;QD=15.5;ReadPosRankSum=-1.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:9,14:23:99:386,0,280
10    115349397    rs67665878    AG    A    2105.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=4;HaplotypeScore=228.1319;IndelType=D;MQ=55.6;MQ0=0;QD=33.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351270    GT:AD:DP:GQ:PL    1/1:1,62:63:99:2148,181,0
10    115350597    rs1885434    G    A    597.80    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.058;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.449;QD=13.9;ReadPosRankSum=-0.158;SNPEFF_AMINO_ACID_CHANGE=R1531C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115350337_115350648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360478    GT:AD:DP:GQ:PL    0/1:23,20:43:99:628,0,677
10    115350800    rs1885435    T    C    81.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HABP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351270    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
10    115352005    rs11196389    A    G    765.88    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.621;DB;DP=48;Dels=0.0;FS=1.141;HRun=1;HaplotypeScore=0.9734;MQ=59.52;MQ0=0;MQRankSum=-0.644;QD=15.96;ReadPosRankSum=0.582;SNPEFF_AMINO_ACID_CHANGE=L1496P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115351953_115352060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360478    GT:AD:DP:GQ:PL    0/1:21,27:48:99:796,0,598
10    115357078    rs12241995    G    A    104.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=17.44;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:135,0,67
10    115370254    rs12243176    A    G    372.57    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.993;DB;DP=54;Dels=0.0;FS=2.523;HRun=0;HaplotypeScore=0.5784;MQ=54.65;MQ0=0;MQRankSum=1.676;QD=6.9;ReadPosRankSum=0.649;SNPEFF_AMINO_ACID_CHANGE=I1154;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115370218_115370322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360478    GT:AD:DP:GQ:PL    0/1:38,16:54:99:403,0,1056
10    115370274    rs10749138    T    C    330.28    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.487;DB;DP=51;Dels=0.0;FS=4.442;HRun=0;HaplotypeScore=0.8667;MQ=54.82;MQ0=0;MQRankSum=2.203;QD=6.48;ReadPosRankSum=0.599;SNPEFF_AMINO_ACID_CHANGE=I1148V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115370218_115370322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360478    GT:AD:DP:GQ:PL    0/1:35,16:51:99:360,0,1123
10    115371873    rs1539588    G    T    108.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.06;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,176
10    115373851    rs2419850    T    C    277.81    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.786;QD=11.58;ReadPosRankSum=-1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:14,10:24:99:308,0,493
10    115375528    rs11196397    C    A    294.46    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DB;DP=27;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.477;QD=10.91;ReadPosRankSum=0.678;SNPEFF_AMINO_ACID_CHANGE=P1007;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115375471_115375575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:17,10:27:99:324,0,521
10    115380311    rs11599399    C    T    357.53    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=0.051;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.67;MQ0=0;MQRankSum=-1.485;QD=10.22;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:22,13:35:99:388,0,682
10    115380608    rs2419851    A    C    262.35    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.271;QD=26.24;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:2,8:10:53.42:292,0,53
10    115393929    rs3189030    G    A    1285.38    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=1.075;DB;DP=100;Dels=0.0;FS=10.028;HRun=1;HaplotypeScore=2.3391;MQ=59.4;MQ0=0;MQRankSum=0.322;QD=12.85;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=S219L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115393871_115393969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369343    GT:AD:DP:GQ:PL    0/1:54,46:100:99:1315,0,1565
10    115400264    rs1539591    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    115401031    rs5788038    AT    A    129.42    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=9;FS=0.0;HRun=9;HaplotypeScore=57.3484;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=-0.747;QD=14.38;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:2,7:9:10.61:168,0,11
10    115401081    rs3127105    T    C    369.78    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.189;QD=21.75;ReadPosRankSum=0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:4,13:17:99:400,0,120
10    115401264    rs3121465    A    G    417.91    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.659;QD=14.93;ReadPosRankSum=-0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:11,17:28:99:448,0,319
10    115401365    rs3121466    A    G    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:2,2:4:70.42:70,0,72
10    115405466    rs3121477    G    A    62.01    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=5.64;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:8,3:11:92.01:92,0,219
10    115405615    rs3127106    T    C    95.45    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.149;DB;DP=36;Dels=0.0;FS=1.817;HRun=2;HaplotypeScore=1.8317;MQ=59.36;MQ0=0;MQRankSum=1.082;QD=2.65;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=Q360R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115405584_115405700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:30,6:36:99:125,0,1079
10    115405664    rs3121478    C    T    250.91    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=0.526;DB;DP=47;Dels=0.0;FS=7.663;HRun=0;HaplotypeScore=1.6006;MQ=59.34;MQ0=0;MQRankSum=-1.142;QD=5.34;ReadPosRankSum=0.038;SNPEFF_AMINO_ACID_CHANGE=A344T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115405584_115405700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:34,13:47:99:281,0,906
10    115405703    rs113867959    G    GAA    531.37    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=2.916;DB;DP=38;FS=1.365;HRun=10;HaplotypeScore=176.5303;IndelType=I;MQ=59.19;MQ0=0;MQRankSum=0.535;QD=13.98;ReadPosRankSum=-0.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:21,15:38:99:570,0,427
10    115410234    rs2185913    T    C    591.10    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=32;Dels=0.0;FS=3.247;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.615;QD=18.47;ReadPosRankSum=0.331;SNPEFF_AMINO_ACID_CHANGE=Y249C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115410197_115410304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:12,20:32:99:621,0,299
10    115411614    rs2154028    A    G    656.85    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=44;Dels=0.0;FS=2.672;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.151;QD=14.93;ReadPosRankSum=1.997;SNPEFF_AMINO_ACID_CHANGE=V208A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115411562_115411666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:21,23:44:99:687,0,636
10    115412686    rs3121488    G    A    629.81    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.227;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.63;MQ0=0;MQRankSum=-0.917;QD=18.52;ReadPosRankSum=-1.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:12,22:34:99:660,0,400
10    115417289    rs1891762    G    A    470.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.068;QD=13.83;ReadPosRankSum=-1.481;SNPEFF_AMINO_ACID_CHANGE=H100;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115417229_115417333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:17,17:34:99:500,0,546
10    115423094    rs12770981    G    C    178.42    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.092;QD=13.72;ReadPosRankSum=-1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359988    GT:AD:DP:GQ:PL    0/1:5,8:13:99:208,0,156
10    115457264    rs11593766    T    G    1244.36    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=2.211;DB;DP=113;Dels=0.0;FS=23.981;HRun=0;HaplotypeScore=2.4573;MQ=59.19;MQ0=0;MQRankSum=0.189;QD=10.92;ReadPosRankSum=-0.23;SNPEFF_AMINO_ACID_CHANGE=D37E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115457253_115457362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369321    GT:AD:DP:GQ:PL    0/1:66,47:113:99:1274,0,2114
10    115480582    rs11196449    T    C    653.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345633    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:687,54,0
10    115481018    rs3814231    C    T    267.14    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.023;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=11.61;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345633    GT:AD:DP:GQ:PL    0/1:13,10:23:99:297,0,433
10    115485400    rs11592536    T    C    120.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.881;QD=13.38;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468790    GT:AD:DP:GQ:PL    0/1:4,5:9:99:150,0,134
10    115489152    rs2227310    C    G    931.01    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.476;DB;DP=79;Dels=0.0;FS=3.077;HRun=0;HaplotypeScore=0.7887;MQ=59.76;MQ0=0;MQRankSum=0.333;QD=11.78;ReadPosRankSum=-0.85;SNPEFF_AMINO_ACID_CHANGE=T244S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115489070_115490662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369331    GT:AD:DP:GQ:PL    0/1:46,33:79:99:961,0,1538
10    115489167    rs2227309    G    A    1172.66    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.621;DB;DP=81;Dels=0.0;FS=0.85;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.602;QD=14.48;ReadPosRankSum=-1.132;SNPEFF_AMINO_ACID_CHANGE=R249K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115489070_115490662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369331    GT:AD:DP:GQ:PL    0/1:43,38:81:99:1203,0,1386
10    115515120    rs3981351    G    A    493.93    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.339;DB;DP=30;Dels=0.0;FS=6.235;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.628;QD=16.46;ReadPosRankSum=1.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361048    GT:AD:DP:GQ:PL    0/1:13,17:30:99:524,0,459
10    115525175    rs4631835    T    C    615.85    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.002;DB;DP=82;Dels=0.0;FS=5.037;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=7.51;ReadPosRankSum=0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361048    GT:AD:DP:GQ:PL    0/1:54,28:82:99:646,0,1659
10    115529576    rs41292632    T    A    1508.88    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.397;DB;DP=102;Dels=0.0;FS=2.589;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.513;QD=14.79;ReadPosRankSum=-0.969;SNPEFF_AMINO_ACID_CHANGE=F151I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115529543_115529659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369310    GT:AD:DP:GQ:PL    0/1:48,54:102:99:1539,0,1525
10    115533975    rs3750903    T    C    568.06    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=2.308;DB;DP=39;Dels=0.0;FS=1.994;HRun=0;HaplotypeScore=1.2434;MQ=58.69;MQ0=0;MQRankSum=2.138;QD=14.57;ReadPosRankSum=1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354462    GT:AD:DP:GQ:PL    0/1:17,22:39:99:598,0,538
10    115535405    rs7899444    A    G    126.24    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=9.71;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354462    GT:AD:DP:GQ:PL    0/1:8,5:13:99:156,0,288
10    115535426    rs7899829    G    A    130.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=8.72;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354462    GT:AD:DP:GQ:PL    0/1:10,5:15:99:161,0,371
10    115535599    rs3750901    T    C    783.90    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=65;Dels=0.0;FS=1.037;HRun=1;HaplotypeScore=0.7887;MQ=59.65;MQ0=0;MQRankSum=0.043;QD=12.06;ReadPosRankSum=1.008;SNPEFF_AMINO_ACID_CHANGE=A169;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115535524_115535625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369309    GT:AD:DP:GQ:PL    0/1:38,27:65:99:814,0,1143
10    115540311    rs11196482    T    G    1555.40    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.102;DB;DP=102;Dels=0.0;FS=7.293;HRun=0;HaplotypeScore=1.7998;MQ=59.77;MQ0=0;MQRankSum=1.217;QD=15.25;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369310    GT:AD:DP:GQ:PL    0/1:54,48:102:99:1585,0,1650
10    115540411    rs11196483    T    C    1965.08    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.729;DB;DP=146;Dels=0.0;FS=0.628;HRun=1;HaplotypeScore=2.6214;MQ=59.84;MQ0=0;MQRankSum=-0.969;QD=13.46;ReadPosRankSum=-0.249;SNPEFF_AMINO_ACID_CHANGE=A156;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115540361_115543188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354462    GT:AD:DP:GQ:PL    0/1:72,74:146:99:1995,0,2181
10    115602408    rs10885514    G    A    465.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLRE1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361384    GT:AD:DP:GQ:PL    1/1:0,15:15:42.10:499,42,0
10    115609915    rs3750898    C    G    3094.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=D317H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115608739_115610403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLRE1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361384    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3128,229,0
10    115663459    rs150753996    T    C    2218.77    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.962;DB;DP=127;Dels=0.0;FS=1.756;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=0.659;QD=17.47;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=I556;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115663286_115663495;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHLRC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369301    GT:AD:DP:GQ:PL    0/1:56,70:127:99:2249,0,1824
10    115805056    rs1801253    G    C    125.55    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=17;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=0.9996;MQ=57.23;MQ0=0;MQRankSum=0.065;QD=7.39;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=G389R;SNPEFF_CODON_CHANGE=Gga/Cga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115803806_115806667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369295    GT:AD:DP:GQ:PL    0/1:10,7:17:99:156,0,205
10    115889872    rs606682    A    G    41.79    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.36;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490661    GT:AD:DP:GQ:PL    0/1:1,4:5:32.73:72,0,33
10    115894959    rs7902873    C    G    213.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369287    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
10    115962953    rs17091414    A    G    187.32    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.22;DB;DP=23;Dels=0.0;FS=4.172;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.157;QD=8.14;ReadPosRankSum=-1.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251864    GT:AD:DP:GQ:PL    0/1:14,9:23:99:217,0,478
10    115978429    rs642602    C    T    123.10    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.832;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.113;QD=7.69;ReadPosRankSum=-0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251864    GT:AD:DP:GQ:PL    0/1:11,5:16:99:153,0,300
10    115985875    rs138115541    A    G    499.60    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.904;DB;DP=35;Dels=0.0;FS=4.993;HRun=1;HaplotypeScore=0.8667;MQ=59.34;MQ0=0;MQRankSum=-0.083;QD=14.27;ReadPosRankSum=0.447;SNPEFF_AMINO_ACID_CHANGE=A1025;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_115985808_115985975;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251864    GT:AD:DP:GQ:PL    0/1:16,19:35:99:530,0,513
10    115987550    rs11196660    G    C    60.42    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=5.49;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251864    GT:AD:DP:GQ:PL    0/1:8,3:11:90.42:90,0,284
10    116008250    rs639813    A    C    82.15    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.43;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298715    GT:AD:DP:GQ:PL    0/1:1,4:5:20.46:112,0,20
10    116008299    rs639870    C    T    137.62    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=19.66;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298715    GT:AD:DP:GQ:PL    0/1:2,5:7:59.76:168,0,60
10    116013367    rs59164459    CT    C    2609.28    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=8.455;DB;DP=148;FS=1.571;HRun=1;HaplotypeScore=376.9243;IndelType=D;MQ=60.94;MQ0=0;MQRankSum=-1.726;QD=17.63;ReadPosRankSum=-1.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298715    GT:AD:DP:GQ:PL    0/1:71,77:148:99:2648,0,2811
10    116032519    rs597371    A    G    1428.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=59.59;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=E131G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_116032499_116032693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298715    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1461,114,0
10    116058933    rs1889450    G    A    962.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486300    GT:AD:DP:GQ:PL    1/1:0,30:30:81.22:995,81,0
10    116060194    rs80122543    A    AG    1809.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=4;HaplotypeScore=121.8894;IndelType=I;MQ=60.2;MQ0=0;QD=38.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486300    GT:AD:DP:GQ:PL    1/1:2,44:47:99:1851,129,0
10    116060313    .    G    A    592.48    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DP=34;Dels=0.0;FS=3.064;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=17.43;ReadPosRankSum=0.705;SNPEFF_AMINO_ACID_CHANGE=P560L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_116060204_116060449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304129    GT:AD:DP:GQ:PL    0/1:16,18:34:99:622,0,384
10    116060387    rs2286396    T    C    1033.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=R535;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_116060204_116060449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304129    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1066,81,0
10    116066160    rs1468497    T    G    322.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=29.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419268    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:355,27,0
10    116066220    rs1468498    A    G    343.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419268    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:376,30,0
10    116068176    rs581327    A    G    1783.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419268    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1816,150,0
10    116073507    rs537022    A    G    72.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304129    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:104,9,0
10    116073696    rs3813722    C    T    1078.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=T242;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_116073630_116073809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304129    GT:AD:DP:GQ:PL    1/1:0,34:34:87.23:1112,87,0
10    116075228    rs694883    A    G    337.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304129    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:371,30,0
10    116075271    rs76983828    T    TCC    1085.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=4;HaplotypeScore=85.8769;IndelType=I;MQ=58.3;MQ0=0;QD=51.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304129    GT:AD:DP:GQ:PL    1/1:0,21:21:63.22:1128,63,0
10    116100320    rs4752395    T    G    883.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFAP1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304129    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:916,72,0
10    116244880    rs2475225    T    C    73.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277895    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,105
10    116304958    rs10885579    C    T    76.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=6.41;ReadPosRankSum=1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481974    GT:AD:DP:GQ:PL    0/1:8,4:12:99:107,0,285
10    116304971    rs2483595    T    C    80.39    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=7.31;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481974    GT:AD:DP:GQ:PL    0/1:7,4:11:99:110,0,240
10    116307504    rs2247528    A    G    558.20    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.84;DB;DP=40;Dels=0.0;FS=6.647;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=13.95;ReadPosRankSum=-0.785;SNPEFF_AMINO_ACID_CHANGE=N159;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_116307409_116307535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369256    GT:AD:DP:GQ:PL    0/1:21,19:40:99:588,0,651
10    116307770    rs2247624    C    T    35.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.83;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABLIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277895    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:65,0,64
10    116920090    rs2065719    A    C    356.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.43;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.066;QD=16.22;ReadPosRankSum=0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526946    GT:AD:DP:GQ:PL    0/1:11,11:22:99:387,0,347
10    116931101    rs5788096    C    CTT    4211.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.0;HRun=1;HaplotypeScore=197.003;IndelType=I;MQ=60.81;MQ0=0;QD=56.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527407    GT:AD:DP:GQ:PL    1/1:2,72:75:99:4212,223,0
10    117024548    rs11409278    A    AT    555.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=9;HaplotypeScore=34.0606;IndelType=I;MQ=61.19;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355044    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:598,54,0
10    117075175    rs1953758    G    A    2280.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.91;MQ0=0;QD=35.63;SNPEFF_AMINO_ACID_CHANGE=S86N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_117075028_117075246;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423111    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2314,172,0
10    117221644    rs185667145    A    G    216.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=15.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303745    GT:AD:DP:GQ:PL    0/1:6,8:14:99:247,0,208
10    117226880    rs17723399    T    G    70.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303745    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:101,0,70
10    117228558    rs11197228    A    G    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303745    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,112
10    117228794    rs10885721    A    G    933.27    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.673;DB;DP=65;Dels=0.0;FS=0.922;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=0.007;QD=14.36;ReadPosRankSum=-0.02;SNPEFF_AMINO_ACID_CHANGE=T1203;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_117228682_117228839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355044    GT:AD:DP:GQ:PL    0/1:33,32:65:99:963,0,1028
10    117228946    rs12770375    C    T    350.71    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.188;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.775;QD=18.46;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303745    GT:AD:DP:GQ:PL    0/1:8,11:19:99:381,0,273
10    117278891    rs41310290    C    T    524.07    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.823;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=19.41;ReadPosRankSum=-0.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303745    GT:AD:DP:GQ:PL    0/1:8,19:27:99:554,0,255
10    117278988    rs6421370    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303745    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    117308880    rs1336109    A    G    147.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=13.45;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303745    GT:AD:DP:GQ:PL    0/1:5,6:11:99:178,0,166
10    117309098    rs1336108    G    A    613.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534530    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:647,48,0
10    117486763    rs2254619    G    T    230.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.906;DB;DP=27;Dels=0.0;FS=13.802;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.026;QD=8.53;ReadPosRankSum=-1.466;SNPEFF_AMINO_ACID_CHANGE=L1267;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_117486758_117486865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355044    GT:AD:DP:GQ:PL    0/1:18,9:27:99:260,0,565
10    117486910    rs2286631    T    G    176.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATRNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303745    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:209,15,0
10    117849106    rs56346845    G    A    328.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.36;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.318;QD=10.96;ReadPosRankSum=0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355422    GT:AD:DP:GQ:PL    0/1:18,12:30:99:359,0,628
10    117849113    rs56384669    T    C    290.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.16;MQ0=0;MQRankSum=0.783;QD=8.8;ReadPosRankSum=0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355422    GT:AD:DP:GQ:PL    0/1:22,11:33:99:320,0,800
10    117884950    rs2245020    G    A    732.03    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.798;DB;DP=42;Dels=0.0;FS=3.214;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.744;QD=17.43;ReadPosRankSum=0.095;SNPEFF_AMINO_ACID_CHANGE=N179;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_117884732_117885068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355422    GT:AD:DP:GQ:PL    0/1:15,27:42:99:762,0,412
10    118187330    rs1991681    T    C    154.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369230    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:188,15,0
10    118187399    rs10787669    T    G    318.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_118187379_118187573;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369230    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:351,27,0
10    118187405    rs10787670    T    C    405.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_10_118187379_118187573;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369230    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:439,33,0
10    118215150    rs113301853    C    CT    182.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=10;HaplotypeScore=17.662;IndelType=I;MQ=60.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369230    GT:AD:DP:GQ:PL    1/1:1,7:8:21.05:224,21,0
10    118231360    rs10736251    G    A    1927.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=V381I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118231280_118231391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369230    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1961,144,0
10    118231363    rs1897519    A    G    1819.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=R382G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118231280_118231391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369230    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1853,141,0
10    118231406    rs10749217    A    C    1325.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369230    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1359,105,0
10    118313116    rs2915749    T    C    83.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470562    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
10    118313265    rs2915748    T    C    999.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=N162;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118313239_118313350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369221    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1032,78,0
10    118315835    rs2915775    T    C    150.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369221    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:183,15,0
10    118351905    rs1867991    A    C    2164.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.773;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5324;MQ=59.67;MQ0=0;MQRankSum=-0.666;QD=30.92;ReadPosRankSum=1.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530626    GT:AD:DP:GQ:PL    1/1:1,68:70:99:2197,129,0
10    118355530    rs2305206    A    G    298.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442761    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:332,27,0
10    118355695    rs2915765    A    T    2738.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DB;DP=100;Dels=0.0;FS=2.918;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.42;QD=27.38;ReadPosRankSum=1.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442761    GT:AD:DP:GQ:PL    1/1:2,98:100:99:2771,160,0
10    118357490    rs2915764    C    T    1996.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442761    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2029,150,0
10    118359461    rs17735613    A    G    776.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.188;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.893;QD=13.87;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484402    GT:AD:DP:GQ:PL    0/1:28,28:56:99:807,0,901
10    118359548    rs3816355    T    C    1451.96    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.484;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2853;MQ=59.54;MQ0=0;MQRankSum=-1.016;QD=16.13;ReadPosRankSum=0.726;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484402    GT:AD:DP:GQ:PL    0/1:38,52:90:99:1482,0,1107
10    118363642    rs3010501    T    C    894.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=S388;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118363542_118363650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358834    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:927,66,0
10    118364818    rs2915754    G    T    1526.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534513    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1560,117,0
10    118364842    rs2915753    A    G    1900.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534513    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1933,144,0
10    118368493    .    CCAAAA    C    163.66    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=2.606;DP=18;FS=2.663;HRun=0;HaplotypeScore=97.806;IndelType=D;MQ=59.25;MQ0=0;MQRankSum=0.566;QD=9.09;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358834    GT:AD:DP:GQ:PL    0/1:13,5:18:99:203,0,822
10    118368606    rs1049125    T    C    544.30    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.895;DB;DP=43;Dels=0.0;FS=2.75;HRun=1;HaplotypeScore=1.6006;MQ=59.46;MQ0=0;MQRankSum=-0.329;QD=12.66;ReadPosRankSum=0.303;SNPEFF_AMINO_ACID_CHANGE=L461P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118368565_118368687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PNLIPRP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358834    GT:AD:DP:GQ:PL    0/1:20,23:43:99:574,0,512
10    118380511    rs3010502    A    G    285.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
10    118383382    rs12256398    C    T    515.73    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.384;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.54;MQ0=0;MQRankSum=-0.326;QD=12.89;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:22,18:40:99:546,0,797
10    118383463    rs74681392    A    AG    4302.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;FS=0.0;HRun=1;HaplotypeScore=237.7483;IndelType=I;MQ=60.42;MQ0=0;QD=43.46;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_10_118383463_118383610;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    1/1:1,98:99:99:4303,289,0
10    118383703    rs2286776    C    T    387.73    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=2.325;DB;DP=29;Dels=0.0;FS=3.032;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.819;QD=13.37;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:12,17:29:99:418,0,411
10    118385843    rs3815416    C    A    38.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:68,0,29
10    118386254    .    T    G    49.74    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.1615;MQ=48.43;MQ0=0;MQRankSum=-1.517;QD=4.52;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:3,8:11:79.73:80,0,80
10    118386325    rs9787637    C    A    351.74    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.206;DB;DP=32;Dels=0.0;FS=1.72;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.153;QD=10.99;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:17,15:32:99:382,0,473
10    118387282    rs11544712    A    G    75.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=10.75;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=L158;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118387274_118387385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:3,4:7:96.95:105,0,97
10    118389690    rs12763549    A    G    349.07    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.529;DB;DP=25;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.224;QD=13.96;ReadPosRankSum=-0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429325    GT:AD:DP:GQ:PL    0/1:13,12:25:99:379,0,438
10    118391063    rs10885995    C    A    71.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=14.37;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429325    GT:AD:DP:GQ:PL    0/1:2,3:5:56.18:102,0,56
10    118394551    rs2286779    G    C    428.96    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=32;Dels=0.0;FS=9.947;HRun=0;HaplotypeScore=0.734;MQ=57.8;MQ0=0;MQRankSum=1.482;QD=13.4;ReadPosRankSum=-1.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:16,15:32:99:459,0,550
10    118396138    rs11197775    T    C    76.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.35;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:2,3:5:57.78:107,0,58
10    118396278    rs11197776    G    T    454.26    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.859;DB;DP=50;Dels=0.0;FS=1.436;HRun=10;HaplotypeScore=2.9064;MQ=59.29;MQ0=0;MQRankSum=0.38;QD=9.09;ReadPosRankSum=-0.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:31,19:50:99:484,0,1003
10    118397884    rs4751995    A    G    1140.11    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=73;Dels=0.0;FS=4.747;HRun=1;HaplotypeScore=2.654;MQ=60.0;MQ0=0;MQRankSum=-0.75;QD=15.62;ReadPosRankSum=-1.662;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431527    GT:AD:DP:GQ:PL    0/1:32,41:73:99:1170,0,969
10    118397894    rs4751996    A    G    1052.82    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.7;DB;DP=69;Dels=0.0;FS=3.498;HRun=1;HaplotypeScore=2.2772;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=15.26;ReadPosRankSum=-1.087;SNPEFF_AMINO_ACID_CHANGE=I360V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118397887_118397991;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1083,0,1018
10    118397971    rs10885997    A    G    1109.12    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.139;DB;DP=74;Dels=0.0;FS=2.007;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.781;QD=14.99;ReadPosRankSum=-1.047;SNPEFF_AMINO_ACID_CHANGE=S385;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118397887_118397991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537242    GT:AD:DP:GQ:PL    0/1:34,40:74:99:1139,0,1005
10    118398046    rs7910135    C    A    639.58    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.341;DB;DP=48;Dels=0.0;FS=3.203;HRun=3;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.61;QD=13.32;ReadPosRankSum=-1.252;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431527    GT:AD:DP:GQ:PL    0/1:22,26:48:99:670,0,705
10    118404620    rs2301179    A    G    692.93    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.859;DB;DP=65;Dels=0.0;FS=2.114;HRun=1;HaplotypeScore=2.5997;MQ=60.0;MQ0=0;MQRankSum=0.378;QD=10.66;ReadPosRankSum=-1.376;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298771    GT:AD:DP:GQ:PL    0/1:35,29:65:99:723,0,1084
10    118404700    rs2301178    G    A    311.35    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.09;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.2;MQ0=0;MQRankSum=0.472;QD=10.74;ReadPosRankSum=0.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNLIPRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298771    GT:AD:DP:GQ:PL    0/1:18,11:29:99:341,0,630
10    118427645    rs11197791    G    A    208.90    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=17.41;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369209    GT:AD:DP:GQ:PL    0/1:5,7:12:99:239,0,164
10    118436068    rs2166634    G    T    97.33    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=7.49;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369209    GT:AD:DP:GQ:PL    0/1:9,4:13:99:127,0,336
10    118438909    rs2921960    A    C    254.77    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.122;QD=13.41;ReadPosRankSum=0.857;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480802    GT:AD:DP:GQ:PL    0/1:9,10:19:99:285,0,294
10    118438982    rs17095105    G    A    396.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-1.665;QD=11.32;ReadPosRankSum=-0.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480802    GT:AD:DP:GQ:PL    0/1:20,15:35:99:426,0,604
10    118458305    rs1017088    C    T    281.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=18;Dels=0.0;FS=2.884;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=2.201;QD=15.61;ReadPosRankSum=-0.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468935    GT:AD:DP:GQ:PL    0/1:6,12:18:99:311,0,144
10    118460747    rs1008308    C    T    75.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.988;QD=10.72;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369209    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,105
10    118464529    .    G    T    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369209    GT:AD:DP:GQ:PL    0/1:3,2:5:62.84:63,0,96
10    118614898    rs1616412    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341276    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    118620459    rs11197835    A    C    1425.68    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=5.078;DB;DP=94;Dels=0.0;FS=0.806;HRun=1;HaplotypeScore=0.9665;MQ=59.51;MQ0=0;MQRankSum=2.249;QD=15.17;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=L264;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_118620305_118620474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341276    GT:AD:DP:GQ:PL    0/1:48,46:94:99:1456,0,1571
10    118622128    rs2627197    A    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341276    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    118628036    rs1637571    G    A    67.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=16.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341276    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:100,9,0
10    118628385    rs1637572    C    A    82.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341276    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
10    118633548    rs1637574    A    G    1294.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341276    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1327,99,0
10    118639142    rs2531691    C    T    118.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1598;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392903    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
10    118643670    rs2257791    G    A    331.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341276    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
10    118646129    rs2531685    G    C    3860.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=36.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341276    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3860,283,0
10    118667346    rs2531690    A    C    2735.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8936;MQ=59.7;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369207    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2768,211,0
10    118704295    rs10787731    G    T    303.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1598;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260777    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:337,27,0
10    118708315    rs10595325    GAGA    G    291.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=29.6298;IndelType=D;MQ=52.81;MQ0=0;QD=41.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1598;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260777    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:334,21,0
10    118960527    .    C    T    856.23    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DP=54;Dels=0.0;FS=3.055;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-1.17;QD=15.86;ReadPosRankSum=-0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334549    GT:AD:DP:GQ:PL    0/1:25,29:54:99:886,0,846
10    119001151    rs2619094    A    C    153.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
10    119014023    rs2072362    C    T    455.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:488,36,0
10    119014931    rs363420    C    T    859.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:0,26:26:69.20:892,69,0
10    119014948    rs363343    C    A    1237.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:0,38:38:96.27:1270,96,0
10    119026401    rs363266    T    C    1959.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:1,55:57:99:1992,162,0
10    119026566    rs363227    T    C    1337.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1371,114,0
10    119027123    rs363228    C    A    815.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:849,63,0
10    119027411    rs363271    G    T    117.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:150,12,0
10    119029515    rs363230    C    T    153    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.032;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.13;QD=6.65;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    0/1:15,8:23:99:183,0,515
10    119029744    rs363272    G    A    2561.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC18A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298472    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2594,190,0
10    119042761    rs363293    C    T    1319.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=37.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482496    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1352,102,0
10    119118056    rs17628116    A    G    2205.76    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=4.033;DB;DP=170;DS;Dels=0.0;FS=2.279;HRun=0;HaplotypeScore=3.0316;MQ=59.86;MQ0=0;MQRankSum=0.685;QD=12.98;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334464    GT:AD:DP:GQ:PL    0/1:95,75:170:99:2236,0,2797
10    119307524    rs2240776    T    A    330.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005871.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553456    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
10    119768551    rs7923321    C    T    2881.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_AMINO_ACID_CHANGE=P499;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_119764427_119768736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355624    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2915,211,0
10    119793629    rs2928118    C    T    380    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483413    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:413,30,0
10    120070843    rs34120011    G    GA    923.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=9;HaplotypeScore=194.7744;IndelType=I;MQ=58.82;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM204A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369172    GT:AD:DP:GQ:PL    1/1:6,20:46:99:965,115,0
10    120081287    rs2024090    T    C    138.88    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.281;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=51.13;MQ0=0;MQRankSum=-0.811;QD=9.92;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM204A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469780    GT:AD:DP:GQ:PL    0/1:6,7:14:99:169,0,145
10    120081948    rs853911    C    T    905.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM204A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469780    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:938,69,0
10    120095037    rs34302018    GA    G    605.33    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.813;DB;DP=34;FS=3.675;HRun=1;HaplotypeScore=86.9849;IndelType=D;MQ=60.32;MQ0=0;MQRankSum=-0.293;QD=17.8;ReadPosRankSum=-1.225;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM204A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487269    GT:AD:DP:GQ:PL    0/1:16,18:34:99:644,0,666
10    120353910    rs1613448    T    C    1139.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_AMINO_ACID_CHANGE=I283V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_120352916_120354762;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRLHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239032    GT:AD:DP:GQ:PL    1/1:0,37:37:93.26:1172,93,0
10    120354818    rs3740551    C    T    193.62    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.74;DB;DP=23;Dels=0.0;FS=2.199;HRun=1;HaplotypeScore=0.8321;MQ=59.19;MQ0=0;MQRankSum=0.444;QD=8.42;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRLHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239032    GT:AD:DP:GQ:PL    0/1:15,8:23:99:224,0,339
10    120445794    rs752483    G    A    141.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=11.81;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369151    GT:AD:DP:GQ:PL    0/1:6,5:12:99:172,0,211
10    120460715    rs2274314    G    T    57.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=9.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340214    GT:AD:DP:GQ:PL    0/1:3,3:6:87.58:88,0,99
10    120631519    rs112325095    A    AT    584.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.419;DB;DP=22;FS=0.0;HRun=10;HaplotypeScore=50.3675;IndelType=I;MQ=50.94;MQ0=0;MQRankSum=-1.419;QD=23.39;ReadPosRankSum=-0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-215A21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392739    GT:AD:DP:GQ:PL    1/1:3,21:22:41.31:627,41,0
10    120632048    rs9787461    A    G    2925.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1862;MQ=50.26;MQ0=0;QD=30.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-215A21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420302    GT:AD:DP:GQ:PL    1/1:0,97:97:99:2959,238,0
10    120796572    rs58602709    TC    T    574.09    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=124;FS=8.757;HRun=12;HaplotypeScore=1132.9609;IndelType=D;MQ=50.35;MQ0=0;MQRankSum=0.239;QD=4.63;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425699    GT:AD:DP:GQ:PL    0/1:64,55:124:99:613,0,197
10    120803435    rs565922    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=17.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:82,6,0
10    120803746    rs3740553    T    C    258.26    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=17.22;ReadPosRankSum=0.772;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    0/1:7,8:15:99:288,0,228
10    120803788    rs658352    T    C    68.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.56;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    0/1:5,3:8:98.44:98,0,181
10    120810623    rs669964    A    C    399.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.482;QD=22.21;ReadPosRankSum=0.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    0/1:6,12:18:99:430,0,199
10    120817450    rs10886375    A    G    2204.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2237,165,0
10    120818609    rs6585524    C    T    533.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:566,42,0
10    120819453    rs10787901    A    G    2168.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=38.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2202,163,0
10    120819458    rs10787902    T    C    2119.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=37.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2153,160,0
10    120820224    rs3740555    C    A    2129.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6439;MQ=59.71;MQ0=0;QD=33.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2162,166,0
10    120820528    rs3824822    A    G    292.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
10    120828969    rs7908387    A    G    778.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9494;MQ=60.0;MQ0=0;QD=28.82;SNPEFF_AMINO_ACID_CHANGE=D279;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_120828958_120829166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541549    GT:AD:DP:GQ:PL    1/1:0,27:27:66.18:811,66,0
10    120832675    rs1397618    A    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
10    120832804    rs1397617    C    T    153.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=17.01;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    0/1:4,5:9:99:183,0,106
10    120832872    rs1397616    T    C    727.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369144    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:760,60,0
10    120877248    rs2901173    G    C    206.57    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.61;MQ0=0;MQRankSum=0.246;QD=9.39;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361432    GT:AD:DP:GQ:PL    0/1:12,10:22:99:237,0,389
10    120889022    rs3802739    T    C    328.45    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.01;MQ0=0;MQRankSum=0.634;QD=17.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361432    GT:AD:DP:GQ:PL    0/1:7,12:19:99:358,0,232
10    120896027    rs11198799    G    A    1386.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.3;MQ0=13;QD=25.2;SNPEFF_AMINO_ACID_CHANGE=P163;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_120895983_120896303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM45A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544016    GT:AD:DP:GQ:PL    1/1:6,49:55:99:1419,111,0
10    120905940    rs10654248    C    CGT    179.54    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.005;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=216.9571;IndelType=I;MQ=53.17;MQ0=0;MQRankSum=2.062;QD=4.99;ReadPosRankSum=-0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466218    GT:AD:DP:GQ:PL    0/1:20,8:36:99:219,0,101
10    120905976    rs71016550    C    CGT    270.48    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=142.3504;IndelType=I;MQ=48.96;MQ0=0;MQRankSum=-1.91;QD=14.24;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466218    GT:AD:DP:GQ:PL    0/1:13,6:19:99:310,0,264
10    120907043    rs7095991    C    G    169.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466218    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
10    120907173    .    T    TG    246.06    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DP=18;FS=0.0;HRun=3;HaplotypeScore=62.6014;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=13.67;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466218    GT:AD:DP:GQ:PL    0/1:10,8:18:99:285,0,273
10    120907203    rs61874342    C    T    413.44    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.658;DB;DP=38;Dels=0.0;FS=2.931;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.03;QD=10.88;ReadPosRankSum=0.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466218    GT:AD:DP:GQ:PL    0/1:23,15:38:99:443,0,811
10    120914414    rs34654417    CT    C    542.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=37.2828;IndelType=D;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419372    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:585,45,0
10    120917269    rs2420494    A    T    1789.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.21;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462913    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1822,144,0
10    120917445    rs2275111    G    A    957.10    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.728;DB;DP=80;Dels=0.0;FS=0.874;HRun=1;HaplotypeScore=0.8667;MQ=59.71;MQ0=0;MQRankSum=1.527;QD=11.96;ReadPosRankSum=1.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462913    GT:AD:DP:GQ:PL    0/1:44,35:80:99:987,0,1335
10    120919179    rs3740558    G    A    327.52    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.127;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.53;MQ0=0;MQRankSum=0.211;QD=17.24;ReadPosRankSum=0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330036    GT:AD:DP:GQ:PL    0/1:7,12:19:99:358,0,219
10    120919246    rs2181118    T    C    1089.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.83;MQ0=0;QD=27.23;SNPEFF_AMINO_ACID_CHANGE=A109;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_120919240_120919265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330036    GT:AD:DP:GQ:PL    1/1:0,40:40:87.25:1122,87,0
10    120920588    rs10749291    T    C    794.73    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.922;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.62;MQ0=0;MQRankSum=-0.941;QD=13.25;ReadPosRankSum=-0.91;SNPEFF_AMINO_ACID_CHANGE=Q86;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_120920567_120920593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SFXN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355697    GT:AD:DP:GQ:PL    0/1:30,29:60:99:825,0,969
10    120923780    rs35023478    C    CTT    635.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=15;HaplotypeScore=368.0479;IndelType=I;MQ=45.64;MQ0=0;QD=17.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298510    GT:AD:DP:GQ:PL    1/1:19,10:36:70.59:678,71,0
10    120924874    rs933092    G    C    519.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298510    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:552,42,0
10    120928482    rs34820945    CA    C    98.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=15;HaplotypeScore=45.3433;IndelType=D;MQ=53.45;MQ0=0;QD=9.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463322    GT:AD:DP:GQ:PL    1/1:1,8:9:22.71:140,23,0
10    120931785    rs34524935    A    G    120.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.259;QD=10.07;ReadPosRankSum=1.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463322    GT:AD:DP:GQ:PL    0/1:6,6:12:99:151,0,202
10    120933134    rs7076516    A    C    242.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.99;MQ0=0;MQRankSum=-1.419;QD=10.56;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463322    GT:AD:DP:GQ:PL    1/1:1,22:23:24.06:276,24,0
10    120933324    rs3758609    G    A    2328.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=D106;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_120933249_120933384;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356951    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2362,175,0
10    120933901    rs9651422    T    C    616.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298510    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:649,48,0
10    120936701    rs3740562    G    A    294.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.014;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.733;QD=16.35;ReadPosRankSum=-2.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298510    GT:AD:DP:GQ:PL    0/1:6,12:18:99:324,0,170
10    121093160    rs10886461    A    C    79.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369106    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
10    121140511    rs4751714    A    G    361.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:395,33,0
10    121140534    rs2275037    C    G    126.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
10    121156151    rs41284420    C    T    661.50    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.699;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.503;QD=16.54;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:18,22:40:99:691,0,609
10    121190040    rs10787967    C    G    86.33    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=5.4;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:11,5:16:99:116,0,299
10    121190113    rs915120    T    C    66.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.57;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:96,0,30
10    121191186    rs7099478    C    A    73.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.13;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:4,4:8:99:103,0,103
10    121196035    rs2275039    T    G    147.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:181,15,0
10    121196062    rs2275040    C    T    43.33    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.437;QD=3.33;ReadPosRankSum=-0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:10,3:13:73.32:73,0,342
10    121199189    rs2245364    T    C    999.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    1/1:0,31:31:78.22:1032,78,0
10    121199310    rs1109490    T    C    476.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.205;DB;DP=40;Dels=0.0;FS=1.448;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=11.92;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:20,20:40:99:507,0,680
10    121199365    rs1109489    T    C    252.23    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.882;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.51;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:13,11:24:99:282,0,428
10    121199437    rs915116    T    C    152.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
10    121201616    rs2275043    C    T    298.91    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.061;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.219;QD=14.95;ReadPosRankSum=-1.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:6,13:20:99:329,0,205
10    121201626    rs2275044    T    C    194.84    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.188;DB;DP=19;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.95;QD=10.25;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:11,8:19:99:225,0,273
10    121207895    rs4752312    G    A    1101.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    1/1:0,31:31:87.27:1134,87,0
10    121207961    rs10749321    C    T    117.93    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=16.85;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    0/1:2,5:7:56.72:148,0,57
10    121212028    rs915115    A    C    108.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=18.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369108    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:141,12,0
10    121259878    rs756280    T    C    84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=4.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369101    GT:AD:DP:GQ:PL    1/1:0,17:17:11.99:116,12,0
10    121259879    rs756279    G    A    47.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=2.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369101    GT:AD:DP:GQ:PL    1/1:0,17:17:8.98:80,9,0
10    121287019    rs3009921    G    A    738.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369103    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:772,57,0
10    121338401    rs4752334    T    A    886    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369086    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:919,66,0
10    121429394    rs35434411    G    A    1462.24    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=4.138;DB;DP=94;Dels=0.0;FS=1.831;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=-0.042;QD=15.56;ReadPosRankSum=-0.234;SNPEFF_AMINO_ACID_CHANGE=R13Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121429363_121429689;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450186    GT:AD:DP:GQ:PL    0/1:46,47:94:99:1492,0,1092
10    121429762    rs196326    C    G    226.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=25.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369085    GT:AD:DP:GQ:PL    1/1:0,9:9:21.04:259,21,0
10    121435955    rs196294    A    C    2849.50    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=5.151;DB;DP=157;Dels=0.0;FS=0.719;HRun=0;HaplotypeScore=2.6472;MQ=59.73;MQ0=0;MQRankSum=-0.126;QD=18.15;ReadPosRankSum=0.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369085    GT:AD:DP:GQ:PL    0/1:66,91:157:99:2879,0,2004
10    121436362    rs196295    A    G    1756.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.44;MQ0=0;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=V432;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121435976_121437331;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369085    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1790,135,0
10    121541048    rs5788367    C    CT    177.35    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.442;DB;DP=20;FS=0.0;HRun=10;HaplotypeScore=51.1135;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=-0.353;QD=8.87;ReadPosRankSum=-0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361976    GT:AD:DP:GQ:PL    0/1:11,8:20:99:216,0,168
10    121551581    rs2289306    A    C    800.50    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=4.203;DB;DP=72;Dels=0.0;FS=0.938;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.841;QD=11.12;ReadPosRankSum=-1.038;SNPEFF_AMINO_ACID_CHANGE=A119;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121551381_121551717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369081    GT:AD:DP:GQ:PL    0/1:41,31:72:99:830,0,1212
10    121556450    rs35384980    T    G    151.66    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=16.85;ReadPosRankSum=1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369081    GT:AD:DP:GQ:PL    0/1:4,5:9:99:182,0,140
10    121564859    rs2273748    A    G    347.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.391;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=12.88;ReadPosRankSum=-1.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361976    GT:AD:DP:GQ:PL    0/1:12,15:27:99:378,0,394
10    121565015    rs2273749    C    G    444.76    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.463;DB;DP=24;Dels=0.0;FS=2.395;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=18.53;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361976    GT:AD:DP:GQ:PL    0/1:11,13:24:99:475,0,350
10    121571507    rs3781503    T    C    323.75    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.22;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.659;QD=11.99;ReadPosRankSum=1.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361976    GT:AD:DP:GQ:PL    0/1:15,12:27:99:354,0,508
10    121579040    rs17099318    T    C    711.53    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.365;DB;DP=62;Dels=0.0;FS=2.227;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.051;QD=11.48;ReadPosRankSum=0.268;SNPEFF_AMINO_ACID_CHANGE=F15;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121578228_121579051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369080    GT:AD:DP:GQ:PL    0/1:33,29:62:99:742,0,956
10    121583464    rs35535788    T    TA    536.49    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.899;DB;DP=35;FS=0.0;HRun=1;HaplotypeScore=75.4642;IndelType=I;MQ=60.31;MQ0=0;MQRankSum=1.067;QD=15.33;ReadPosRankSum=-1.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490818    GT:AD:DP:GQ:PL    0/1:20,15:35:99:576,0,602
10    121586827    rs56055506    A    G    405.94    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=39;Dels=0.0;FS=1.337;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=10.41;ReadPosRankSum=0.926;SNPEFF_AMINO_ACID_CHANGE=R368;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121586143_121587837;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369080    GT:AD:DP:GQ:PL    0/1:23,16:39:99:436,0,769
10    121590850    rs28362484    T    TAC    228.74    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=59.9472;IndelType=I;MQ=58.78;MQ0=0;MQRankSum=-0.132;QD=12.04;ReadPosRankSum=0.132;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361976    GT:AD:DP:GQ:PL    0/1:13,5:19:99:268,0,517
10    121591493    .    G    A    755.20    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=5.685;DP=79;Dels=0.0;FS=2.046;HRun=3;HaplotypeScore=1.6316;MQ=59.53;MQ0=0;MQRankSum=-1.176;QD=9.56;ReadPosRankSum=-1.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361976    GT:AD:DP:GQ:PL    0/1:48,31:79:99:785,0,1269
10    121591511    rs2273747    G    A    1391.32    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=3.542;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5542;MQ=59.54;MQ0=0;MQRankSum=-0.048;QD=16.97;ReadPosRankSum=-0.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361976    GT:AD:DP:GQ:PL    0/1:29,53:82:99:1421,0,771
10    121596611    rs3765508    C    T    484.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.522;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.38;MQ0=0;MQRankSum=-0.305;QD=18.63;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360003    GT:AD:DP:GQ:PL    0/1:10,15:25:99:514,0,296
10    121601808    rs72509502    G    GA    141.02    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=32.4621;IndelType=I;MQ=58.33;MQ0=0;MQRankSum=0.689;QD=10.07;ReadPosRankSum=1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495407    GT:AD:DP:GQ:PL    0/1:8,6:14:99:180,0,219
10    121602732    rs17099338    C    T    1015.23    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.117;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.84;QD=14.5;ReadPosRankSum=0.104;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360003    GT:AD:DP:GQ:PL    0/1:36,34:70:99:1045,0,1045
10    121602949    rs3740565    G    A    333.66    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.815;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=1.418;QD=9.81;ReadPosRankSum=0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360003    GT:AD:DP:GQ:PL    0/1:21,13:34:99:364,0,727
10    121607015    rs3740567    C    T    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360003    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,141
10    121607324    rs17099343    C    T    113    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=14.13;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360003    GT:AD:DP:GQ:PL    0/1:3,5:8:99:143,0,101
10    121612837    rs17099349    G    A    142.25    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=17.78;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360003    GT:AD:DP:GQ:PL    0/1:3,5:8:99:172,0,101
10    121618382    rs34469768    T    A    956.04    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.65;MQ0=0;MQRankSum=1.285;QD=14.71;ReadPosRankSum=1.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360003    GT:AD:DP:GQ:PL    0/1:31,34:65:99:986,0,946
10    121619570    rs17099357    T    C    55.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=6.99;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCMBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360003    GT:AD:DP:GQ:PL    0/1:4,3:8:85.90:86,0,104
10    121652180    rs3808959    A    G    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
10    121657801    rs144326454    CTG    C    375.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=51.0623;IndelType=D;MQ=60.72;MQ0=0;MQRankSum=0.674;QD=25.03;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    0/1:5,10:15:99:414,0,236
10    121663483    rs2475304    C    T    399.74    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.902;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.369;QD=14.28;ReadPosRankSum=-0.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    0/1:15,13:28:99:430,0,550
10    121668501    rs3740569    C    A    277.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.766;QD=15.39;ReadPosRankSum=0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    0/1:9,9:18:99:307,0,308
10    121668656    rs3740570    T    G    307.21    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=12.8;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    0/1:13,11:24:99:337,0,464
10    121671651    rs17099368    T    C    880.34    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.467;DB;DP=76;Dels=0.0;FS=1.984;HRun=0;HaplotypeScore=1.9134;MQ=60.0;MQ0=0;MQRankSum=-0.324;QD=11.58;ReadPosRankSum=0.366;SNPEFF_AMINO_ACID_CHANGE=D133;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121671556_121671676;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446561    GT:AD:DP:GQ:PL    0/1:41,35:76:99:910,0,1274
10    121675238    rs71482627    C    CTT    376.49    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=35;FS=1.814;HRun=12;HaplotypeScore=196.3618;IndelType=I;MQ=56.58;MQ0=0;MQRankSum=-0.529;QD=10.76;ReadPosRankSum=-0.944;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    0/1:18,10:35:99:416,0,334
10    121678146    rs41300221    T    G    198.89    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.117;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=12.43;ReadPosRankSum=1.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446561    GT:AD:DP:GQ:PL    0/1:9,7:16:99:229,0,315
10    121678896    rs2475300    C    G    780.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446561    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:813,60,0
10    121679013    rs2475298    A    G    3081.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.75;MQ0=0;MQRankSum=0.226;QD=32.78;ReadPosRankSum=-1.393;SNPEFF_AMINO_ACID_CHANGE=K433E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121678956_121679108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543134    GT:AD:DP:GQ:PL    1/1:1,93:94:99:3114,203,0
10    121680359    rs2271123    A    G    289.49    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=2.15;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.794;QD=8.27;ReadPosRankSum=-0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462222    GT:AD:DP:GQ:PL    0/1:24,11:35:99:319,0,844
10    121685448    rs6585564    A    T    333.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:367,27,0
10    121685559    rs12771873    G    A    561.62    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.945;DB;DP=32;Dels=0.0;FS=1.901;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.529;QD=17.55;ReadPosRankSum=0.491;SNPEFF_AMINO_ACID_CHANGE=A500;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121685548_121685739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543134    GT:AD:DP:GQ:PL    0/1:15,17:32:99:592,0,440
10    121689325    rs142435433    A    G    259.36    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.837;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.939;QD=13.65;ReadPosRankSum=-0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    0/1:10,9:19:99:289,0,338
10    121692777    rs2279940    A    G    363.72    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.601;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.28;QD=19.14;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369075    GT:AD:DP:GQ:PL    0/1:8,11:19:99:394,0,253
10    121693246    rs34826964    A    G    223.56    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=0.764;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=-0.351;QD=6.99;ReadPosRankSum=2.622;SNPEFF_AMINO_ACID_CHANGE=T779;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_121693198_121693299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543134    GT:AD:DP:GQ:PL    0/1:21,11:32:99:254,0,605
10    121883506    rs4414139    T    A    1501.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353664.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408475    GT:AD:DP:GQ:PL    1/1:0,41:42:99:1534,117,0
10    121883529    rs4314979    C    A    1715.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353664.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408475    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1748,129,0
10    121883700    rs76752901    C    CA    592.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=6;HaplotypeScore=124.6177;IndelType=I;MQ=61.53;MQ0=0;QD=28.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353664.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408475    GT:AD:DP:GQ:PL    1/1:3,18:21:51.16:634,51,0
10    121883714    rs7099396    T    A    690.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=61.69;MQ0=0;QD=36.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL353664.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408475    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:723,57,0
10    122114550    rs35756519    T    A    330.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.06;MQ0=60;QD=4.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-572P18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495531    GT:AD:DP:GQ:PL    1/1:45,28:73:30.09:364,30,0
10    122263555    rs2478418    A    T    260.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369073    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:294,21,0
10    122273276    rs5788426    CT    C    114.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=26.0991;IndelType=D;MQ=57.94;MQ0=0;QD=19.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369073    GT:AD:DP:GQ:PL    1/1:0,6:6:18:156,18,0
10    122334561    rs4751791    C    T    188.21    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=8.96;ReadPosRankSum=1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369073    GT:AD:DP:GQ:PL    0/1:14,7:21:99:218,0,476
10    122348969    rs1047369    C    T    385.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.802;DB;DP=42;Dels=0.0;FS=3.99;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=9.19;ReadPosRankSum=0.68;SNPEFF_AMINO_ACID_CHANGE=S194;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_122348815_122349367;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAPDC1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439221    GT:AD:DP:GQ:PL    0/1:28,14:42:99:416,0,738
10    122358342    rs4752442    G    C    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369071    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
10    122358463    rs2901257    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369071    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    122622121    rs3816173    A    C    619.18    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=4.856;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=1.804;QD=18.21;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470052    GT:AD:DP:GQ:PL    0/1:15,19:34:99:649,0,319
10    122624679    rs10886789    G    A    807.99    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=4.816;DB;DP=71;Dels=0.0;FS=3.262;HRun=0;HaplotypeScore=0.5784;MQ=59.68;MQ0=0;MQRankSum=-0.584;QD=11.38;ReadPosRankSum=0.195;SNPEFF_AMINO_ACID_CHANGE=T278;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_122624559_122624724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:39,32:71:99:838,0,1034
10    122626038    rs2289335    C    T    511.05    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.557;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.961;QD=13.45;ReadPosRankSum=0.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462529    GT:AD:DP:GQ:PL    0/1:22,16:38:99:541,0,774
10    122631006    rs11367231    TA    T    89.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=13;HaplotypeScore=18.5436;IndelType=D;MQ=60.0;MQ0=0;QD=12.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    1/1:1,6:7:17.90:131,18,0
10    122633086    rs10466157    A    T    34.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
10    122633607    rs7080550    C    G    202.31    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=15.56;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:6,7:13:99:232,0,189
10    122638073    rs1992274    T    A    147.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=18.45;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:2,6:8:48.29:178,0,48
10    122645376    rs7899928    A    T    1214.91    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.068;DB;DP=76;Dels=0.0;FS=0.93;HRun=0;HaplotypeScore=2.1557;MQ=59.7;MQ0=0;MQRankSum=1.113;QD=15.99;ReadPosRankSum=-0.245;SNPEFF_AMINO_ACID_CHANGE=A633;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_122645326_122645450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:34,42:76:99:1245,0,934
10    122646113    rs7079527    C    T    165.82    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=13.82;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:5,7:12:99:196,0,175
10    122646126    rs7079781    G    A    211.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.276;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.406;QD=15.08;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:7,7:14:99:241,0,246
10    122646160    rs113031271    G    GA    246.12    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=29;FS=7.048;HRun=9;HaplotypeScore=145.53;IndelType=I;MQ=59.95;MQ0=0;MQRankSum=1.401;QD=8.49;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:16,13:29:99:285,0,312
10    122646379    rs7079830    A    G    413.89    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.0;FS=9.361;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.023;QD=18.0;ReadPosRankSum=0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:10,13:23:99:444,0,307
10    122659490    rs2289336    C    T    260.34    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=23;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.031;QD=11.32;ReadPosRankSum=-2.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:13,10:23:99:290,0,469
10    122660701    rs11199635    C    T    363.67    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.14;QD=18.18;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:9,11:20:99:394,0,242
10    122660773    rs11199636    T    C    54.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.85;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:3,4:7:84.95:85,0,110
10    122663585    rs1652727    G    A    1126.84    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.257;DB;DP=86;Dels=0.0;FS=4.28;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.436;QD=13.1;ReadPosRankSum=-0.304;SNPEFF_AMINO_ACID_CHANGE=L986;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_122663559_122663654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263461    GT:AD:DP:GQ:PL    0/1:40,46:86:99:1157,0,1192
10    122664388    rs10886798    C    T    716.84    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.258;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=21.08;ReadPosRankSum=-0.957;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478567    GT:AD:DP:GQ:PL    0/1:11,23:34:99:747,0,355
10    122664967    rs1866516    C    T    422.15    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=1.277;QD=14.56;ReadPosRankSum=-0.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478567    GT:AD:DP:GQ:PL    0/1:13,16:29:99:452,0,356
10    122665285    rs1652726    A    C    521.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478567    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:555,42,0
10    122665310    rs3740306    T    A    164.06    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.077;QD=9.11;ReadPosRankSum=1.826;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478567    GT:AD:DP:GQ:PL    0/1:12,6:18:99:194,0,414
10    122668296    rs7077126    G    A    590.47    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.069;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=57.23;MQ0=0;MQRankSum=-0.208;QD=17.37;ReadPosRankSum=-0.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497136    GT:AD:DP:GQ:PL    0/1:15,19:34:99:620,0,413
10    122668353    rs111464125    T    TAAGA    417.36    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=45.9998;IndelType=I;MQ=51.77;MQ0=0;MQRankSum=-1.067;QD=46.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497136    GT:AD:DP:GQ:PL    0/1:4,5:9:87.95:456,0,88
10    123241496    rs1649167    T    C    209.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
10    123247044    rs2981460    T    C    267.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:300,24,0
10    123247176    rs1649199    C    T    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
10    123247669    rs111564057    AC    A    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.0;HRun=1;HaplotypeScore=217.0189;IndelType=D;MQ=61.61;MQ0=0;QD=40.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    1/1:0,79:79:99:3278,238,0
10    123277666    rs60468962    G    GTA    469.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=51.0376;IndelType=I;MQ=58.71;MQ0=0;MQRankSum=-0.844;QD=26.07;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    0/1:9,9:18:99:508,0,299
10    123277742    rs2420942    C    T    168.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
10    123279745    rs2981448    C    T    145.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:179,15,0
10    123279795    rs2071616    C    T    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
10    123279866    rs2981447    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336553    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
10    123298158    rs1047100    T    C    1064.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.7;SNPEFF_AMINO_ACID_CHANGE=V117;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123298106_123298229;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGFR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356226    GT:AD:DP:GQ:PL    1/1:0,29:29:84.26:1097,84,0
10    123549471    rs2420966    G    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224652    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
10    123549506    rs2420967    C    T    171.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224652    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
10    123549544    rs112775971    T    TACAC    443.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=59.4238;IndelType=I;MQ=61.34;MQ0=0;QD=55.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000224652    GT:AD:DP:GQ:PL    1/1:2,5:8:21.07:486,21,0
10    123596254    rs4237536    T    C    2605.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=S113;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123596233_123596332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535655    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2638,196,0
10    123658618    rs3750835    T    C    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455628    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
10    123659397    .    G    A    899.40    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.727;DP=55;Dels=0.0;FS=1.049;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.161;QD=16.35;ReadPosRankSum=0.245;SNPEFF_AMINO_ACID_CHANGE=T10M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123659381_123659509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535655    GT:AD:DP:GQ:PL    0/1:25,30:55:99:929,0,711
10    123673339    rs10749435    T    C    1500.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123673305_123673408;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000224652    GT:AD:DP:GQ:PL    1/1:0,41:42:99:1533,111,0
10    123724701    rs67693491    AC    A    363.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=52.1253;IndelType=D;MQ=57.87;MQ0=0;QD=33.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMCE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464321    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:406,33,0
10    123724767    rs4752626    T    G    911.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMCE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464321    GT:AD:DP:GQ:PL    1/1:0,27:27:75.21:945,75,0
10    123730685    rs72155417    T    TAA    172.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=19;FS=0.0;HRun=15;HaplotypeScore=148.7733;IndelType=I;MQ=54.95;MQ0=0;MQRankSum=0.751;QD=9.08;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMCE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369017    GT:AD:DP:GQ:PL    1/1:7,7:19:14.55:214,15,0
10    123842065    rs2459103    A    G    977.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498721    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1010,78,0
10    123842523    rs11200385    G    A    266.72    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.396;DB;DP=26;Dels=0.0;FS=4.559;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.013;QD=10.26;ReadPosRankSum=-1.013;SNPEFF_AMINO_ACID_CHANGE=V160I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    0/1:15,11:26:99:297,0,445
10    123844503    rs10887063    C    T    1413.83    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DB;DP=104;Dels=0.0;FS=5.301;HRun=1;HaplotypeScore=1.5253;MQ=59.33;MQ0=0;MQRankSum=0.976;QD=13.59;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=L820F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    0/1:53,50:104:99:1444,0,1750
10    123845211    rs11200387    G    A    548.91    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=0.197;DB;DP=28;Dels=0.0;FS=1.617;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.541;QD=19.6;ReadPosRankSum=1.377;SNPEFF_AMINO_ACID_CHANGE=A1056T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    0/1:9,19:28:99:579,0,240
10    123845322    rs7073433    T    C    789.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.24;SNPEFF_AMINO_ACID_CHANGE=W1093R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    1/1:0,27:27:66.19:822,66,0
10    123845897    rs1106992    G    C    545.15    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.126;DB;DP=38;Dels=0.0;FS=1.433;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.745;QD=14.35;ReadPosRankSum=-0.57;SNPEFF_AMINO_ACID_CHANGE=L1284;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    0/1:20,18:38:99:575,0,662
10    123846288    rs4752642    G    A    661.20    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.546;DB;DP=57;Dels=0.0;FS=4.046;HRun=0;HaplotypeScore=2.5149;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=11.6;ReadPosRankSum=-0.523;SNPEFF_AMINO_ACID_CHANGE=A1415T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    0/1:32,25:57:99:691,0,1061
10    123846485    rs4751871    A    G    545.52    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.571;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.153;QD=17.05;ReadPosRankSum=-2.494;SNPEFF_AMINO_ACID_CHANGE=Q1480;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    0/1:13,19:32:99:576,0,417
10    123846860    rs11599291    C    T    748.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.449;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.27;MQ0=0;MQRankSum=0.314;QD=11.88;ReadPosRankSum=0.795;SNPEFF_AMINO_ACID_CHANGE=P1605;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    0/1:36,27:63:99:779,0,1004
10    123847355    rs10788237    G    A    491.71    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.416;DB;DP=29;Dels=0.0;FS=3.853;HRun=0;HaplotypeScore=0.9665;MQ=59.2;MQ0=0;MQRankSum=1.191;QD=16.96;ReadPosRankSum=0.202;SNPEFF_AMINO_ACID_CHANGE=G1770;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123842162_123847474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340076    GT:AD:DP:GQ:PL    0/1:11,18:29:99:522,0,373
10    123891928    rs2420997    T    G    124.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334433    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
10    123902771    rs10788252    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334433    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    123903442    rs7917175    G    A    42.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334433    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
10    123976391    rs10444046    C    A    1186.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.873;DB;DP=84;Dels=0.0;FS=3.115;HRun=0;HaplotypeScore=2.3656;MQ=59.5;MQ0=0;MQRankSum=-1.262;QD=14.12;ReadPosRankSum=-0.865;SNPEFF_AMINO_ACID_CHANGE=P112T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123976142_123976436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508411    GT:AD:DP:GQ:PL    0/1:42,42:84:99:1216,0,1209
10    123984442    rs2281671    G    A    324.96    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.094;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9312;MQ=59.07;MQ0=0;MQRankSum=1.333;QD=13.0;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260733    GT:AD:DP:GQ:PL    0/1:13,12:25:99:355,0,455
10    123986118    rs34932234    TA    T    191.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=150.6275;IndelType=D;MQ=54.78;MQ0=0;MQRankSum=0.133;QD=9.55;ReadPosRankSum=-1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508411    GT:AD:DP:GQ:PL    0/1:10,10:20:99:230,0,135
10    123996976    rs2295879    G    A    743.84    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.327;DB;DP=62;Dels=0.0;FS=7.141;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.675;QD=12.0;ReadPosRankSum=-0.559;SNPEFF_AMINO_ACID_CHANGE=A2610T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_123996910_123997053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000515603    GT:AD:DP:GQ:PL    0/1:34,27:62:99:774,0,1035
10    123997717    rs1010657    A    G    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496913    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,71
10    124001539    rs11200496    G    C    498.70    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.139;DB;DP=47;Dels=0.0;FS=1.115;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.481;QD=10.61;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496913    GT:AD:DP:GQ:PL    0/1:26,21:47:99:529,0,733
10    124001794    rs11200497    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496913    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    124008927    rs2273794    T    C    30.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.1;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503769    GT:AD:DP:GQ:PL    0/1:3,2:5:60.51:61,0,105
10    124008959    rs2273795    G    T    109.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.19;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503769    GT:AD:DP:GQ:PL    0/1:2,4:6:63.16:139,0,63
10    124013604    rs3763763    C    A    377.13    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.995;DB;DP=29;Dels=0.0;FS=13.222;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.46;QD=13.0;ReadPosRankSum=-1.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TACC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460541    GT:AD:DP:GQ:PL    0/1:16,13:29:99:407,0,485
10    124036226    rs7086403    T    C    202.79    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.998;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.027;QD=8.11;ReadPosRankSum=-2.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:14,11:25:99:233,0,527
10    124036494    rs7090214    T    C    280.25    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=-0.528;QD=12.74;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:10,12:22:99:310,0,305
10    124045887    rs911774    A    G    71.21    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.9;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,188
10    124066652    rs7082865    G    A    771.38    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=4.128;DB;DP=48;Dels=0.0;FS=3.431;HRun=0;HaplotypeScore=2.5494;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=16.07;ReadPosRankSum=1.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:23,25:48:99:801,0,581
10    124089036    rs2421013    G    A    900.58    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=63;Dels=0.0;FS=5.098;HRun=0;HaplotypeScore=1.7219;MQ=59.63;MQ0=0;MQRankSum=-1.052;QD=14.29;ReadPosRankSum=0.447;SNPEFF_AMINO_ACID_CHANGE=R318Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124088995_124089086;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:31,32:63:99:931,0,865
10    124091855    rs5788544    A    AG    142.36    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=15;FS=0.0;HRun=6;HaplotypeScore=44.2312;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=9.49;ReadPosRankSum=-2.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:9,6:15:99:181,0,230
10    124091921    rs4627016    C    T    384.25    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.262;DB;DP=26;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.734;MQ=59.11;MQ0=0;MQRankSum=1.569;QD=14.78;ReadPosRankSum=2.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:14,12:26:99:414,0,357
10    124094283    rs10788282    C    T    173.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.718;QD=14.48;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:6,6:12:99:204,0,218
10    124095982    rs3817280    A    G    170.45    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=15.5;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:4,7:11:99:200,0,102
10    124096035    rs3817281    T    C    213.96    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.912;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.988;QD=10.7;ReadPosRankSum=-0.076;SNPEFF_AMINO_ACID_CHANGE=S430;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124096009_124096197;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:11,9:20:99:244,0,348
10    124096041    rs1129973    T    C    216.66    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-0.465;QD=9.42;ReadPosRankSum=0.341;SNPEFF_AMINO_ACID_CHANGE=S432;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124096009_124096197;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:13,10:23:99:247,0,404
10    124096061    rs1048347    A    C    194.01    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.187;DB;DP=27;Dels=0.0;FS=1.734;HRun=2;HaplotypeScore=0.9789;MQ=58.27;MQ0=0;MQRankSum=-0.501;QD=7.19;ReadPosRankSum=1.239;SNPEFF_AMINO_ACID_CHANGE=H439P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124096009_124096197;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260723    GT:AD:DP:GQ:PL    0/1:17,10:27:99:224,0,552
10    124096209    rs3817284    C    T    269.85    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.093;DB;DP=25;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=0.9947;MQ=59.07;MQ0=0;MQRankSum=-0.082;QD=10.79;ReadPosRankSum=0.575;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495370    GT:AD:DP:GQ:PL    0/1:14,11:25:99:300,0,418
10    124096306    rs3817285    T    C    43.83    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=4.38;ReadPosRankSum=-1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495370    GT:AD:DP:GQ:PL    0/1:7,3:10:73.82:74,0,260
10    124152936    rs72511649    G    GA    542.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=27.8871;IndelType=I;MQ=60.0;MQ0=0;QD=41.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368988    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:585,39,0
10    124166018    rs41310276    T    G    487.49    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.743;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.079;QD=17.41;ReadPosRankSum=-1.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368988    GT:AD:DP:GQ:PL    0/1:10,18:28:99:517,0,258
10    124183690    rs34483104    T    TC    246.51    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=206.632;IndelType=I;MQ=37.32;MQ0=0;MQRankSum=0.087;QD=10.27;ReadPosRankSum=1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368988    GT:AD:DP:GQ:PL    0/1:19,5:24:99:286,0,365
10    124183732    rs4405249    T    C    225.81    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DB;DP=26;Dels=0.04;FS=5.021;HRun=0;HaplotypeScore=0.9665;MQ=42.92;MQ0=0;MQRankSum=1.628;QD=8.36;ReadPosRankSum=-1.523;SNPEFF_AMINO_ACID_CHANGE=R233;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124183715_124183779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368988    GT:AD:DP:GQ:PL    0/1:11,12:26:99:256,0,238
10    124189197    rs1045216    A    G    667.27    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.051;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.326;QD=12.36;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=T320A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124189140_124191867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368990    GT:AD:DP:GQ:PL    0/1:28,26:54:99:697,0,805
10    124214355    rs2736911    C    T    950.52    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=63;Dels=0.0;FS=1.029;HRun=0;HaplotypeScore=0.8941;MQ=59.63;MQ0=0;MQRankSum=0.37;QD=15.09;ReadPosRankSum=0.606;SNPEFF_AMINO_ACID_CHANGE=R38*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_10_124214169_124214540;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMS2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000528446    GT:AD:DP:GQ:PL    0/1:32,31:63:99:981,0,844
10    124266500    rs2672582    C    T    105.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.53;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368984    GT:AD:DP:GQ:PL    0/1:2,4:6:46.89:135,0,47
10    124266991    rs72138847    GTTGT    G    413.55    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=100.4007;IndelType=D;MQ=54.15;MQ0=0;MQRankSum=-0.857;QD=17.98;ReadPosRankSum=0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368984    GT:AD:DP:GQ:PL    0/1:12,11:22:99:453,0,587
10    124268401    rs2672585    C    G    69.61    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=6.96;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368984    GT:AD:DP:GQ:PL    0/1:7,3:10:99:100,0,220
10    124268540    rs2736925    G    C    50.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368984    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
10    124271589    rs2672586    G    A    1009.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.42;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368984    GT:AD:DP:GQ:PL    1/1:0,32:32:75.25:1043,75,0
10    124271595    rs2272599    G    A    521.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.966;DB;DP=30;Dels=0.0;FS=1.9;HRun=0;HaplotypeScore=1.7882;MQ=59.38;MQ0=0;MQRankSum=0.382;QD=17.38;ReadPosRankSum=-1.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368984    GT:AD:DP:GQ:PL    0/1:12,18:30:99:551,0,355
10    124325631    rs2981768    T    C    252.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=56.09;MQ0=0;QD=22.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMBT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327438    GT:AD:DP:GQ:PL    1/1:0,11:11:24.07:285,24,0
10    124331867    rs7084792    C    T    5506.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2215;MQ=59.45;MQ0=0;QD=34.63;SNPEFF_AMINO_ACID_CHANGE=T75;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124331830_124331877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMBT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327438    GT:AD:DP:GQ:PL    1/1:1,158:159:99:5506,403,0
10    124338476    rs1985796    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMBT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327438    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    124339332    rs3013245    T    C    4609.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=39.2;MQ0=2;QD=27.77;SNPEFF_AMINO_ACID_CHANGE=H306;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124339094_124339417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMBT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327438    GT:AD:DP:GQ:PL    1/1:0,165:166:99:4609,400,0
10    124376687    rs140439593    T    G    2610.34    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=170;Dels=0.0;FS=3.858;HRun=0;HaplotypeScore=4.2064;MQ=58.76;MQ0=0;MQRankSum=1.134;QD=15.35;ReadPosRankSum=-0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMBT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327438    GT:AD:DP:GQ:PL    0/1:82,88:170:99:2640,0,2532
10    124457452    rs2947594    C    T    783.27    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=77;Dels=0.0;FS=3.266;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.574;QD=10.17;ReadPosRankSum=-0.64;SNPEFF_AMINO_ACID_CHANGE=A269T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124457225_124458004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf120;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329446    GT:AD:DP:GQ:PL    0/1:49,28:77:99:813,0,1509
10    124457906    rs2901343    C    T    3278.95    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=5.022;DB;DP=240;Dels=0.0;FS=1.071;HRun=0;HaplotypeScore=4.7502;MQ=59.71;MQ0=0;MQRankSum=-0.74;QD=13.66;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=P117;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124457225_124458004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf120;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329446    GT:AD:DP:GQ:PL    0/1:122,118:240:99:3279,0,3592
10    124458735    rs10902922    G    T    92.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.731;QD=15.48;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf120;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329446    GT:AD:DP:GQ:PL    0/1:2,4:6:27.19:123,0,27
10    124459139    rs11813597    T    C    277.29    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.508;DB;DP=23;Dels=0.0;FS=3.834;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.585;QD=12.06;ReadPosRankSum=-0.892;SNPEFF_AMINO_ACID_CHANGE=S56;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124459131_124459338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf120;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329446    GT:AD:DP:GQ:PL    0/1:11,12:23:99:307,0,335
10    124585833    rs11248317    T    C    554.92    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.798;DB;DP=50;Dels=0.0;FS=8.138;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.049;QD=11.1;ReadPosRankSum=1.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-107C16.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442370    GT:AD:DP:GQ:PL    0/1:28,22:50:99:585,0,892
10    124591555    rs7908196    A    G    76.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUZD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338948    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
10    124594153    rs11248321    A    G    381.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUZD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338948    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:414,33,0
10    124595874    rs68035857    GA    G    94.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=16;HaplotypeScore=93.3838;IndelType=D;MQ=54.69;MQ0=0;QD=5.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUZD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338948    GT:AD:DP:GQ:PL    1/1:2,12:16:24.46:137,24,0
10    124610027    rs1891110    G    A    1469.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=P2L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124609940_124610036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM24B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368896    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1502,114,0
10    124640434    rs2950360    C    T    1115.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.05;MQ0=0;QD=31.88;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUZD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545804    GT:AD:DP:GQ:PL    1/1:1,34:35:90.29:1149,90,0
10    124654345    rs113563741    CT    C    499.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=11;HaplotypeScore=113.8227;IndelType=D;MQ=57.66;MQ0=0;QD=16.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-564D11.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368895    GT:AD:DP:GQ:PL    1/1:7,23:30:65.87:542,66,0
10    124697198    rs10794580    G    A    1470.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481909    GT:AD:DP:GQ:PL    1/1:0,40:41:99:1503,111,0
10    124711632    rs9804347    T    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C10orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481909    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
10    124742586    rs3736585    G    A    1833.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368887    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1866,135,0
10    124742683    rs3736584    C    T    546.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368887    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:579,42,0
10    124742792    rs3736583    G    A    1081.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=S171;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124742788_124742986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSTK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368887    GT:AD:DP:GQ:PL    1/1:0,32:32:81.27:1114,81,0
10    124742895    rs3736582    G    C    1308.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.811;MQ=59.48;MQ0=0;QD=29.75;SNPEFF_AMINO_ACID_CHANGE=G206R;SNPEFF_CODON_CHANGE=Gga/Cga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124742788_124742986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSTK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368887    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1342,102,0
10    124746801    rs7096614    T    G    556.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368886    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:590,45,0
10    124747108    rs2421154    T    C    1111.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368886    GT:AD:DP:GQ:PL    1/1:0,28:28:84.26:1145,84,0
10    124749740    rs11190    A    C    506.79    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DB;DP=30;Dels=0.0;FS=3.315;HRun=1;HaplotypeScore=0.734;MQ=58.45;MQ0=0;MQRankSum=0.559;QD=16.89;ReadPosRankSum=0.258;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368886    GT:AD:DP:GQ:PL    0/1:11,19:30:99:537,0,292
10    124800853    rs1140591    C    T    743.16    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.966;DB;DP=53;Dels=0.0;FS=6.035;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.328;QD=14.02;ReadPosRankSum=0.028;SNPEFF_AMINO_ACID_CHANGE=H111;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_124800725_124800895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADSB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368869    GT:AD:DP:GQ:PL    0/1:27,26:53:99:773,0,817
10    124810746    rs11438627    C    CT    278.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=96.7307;IndelType=I;MQ=41.78;MQ0=0;QD=17.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496730    GT:AD:DP:GQ:PL    1/1:6,10:16:30.08:320,30,0
10    124812487    rs2421166    A    G    279.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358776    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:313,24,0
10    124812685    rs112418828    AT    A    283.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=59.3136;IndelType=D;MQ=60.0;MQ0=0;QD=13.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADSB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358776    GT:AD:DP:GQ:PL    1/1:7,14:21:41.81:325,42,0
10    124914414    rs113756220    T    TCTGA    3062.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=132.3134;IndelType=I;MQ=50.1;MQ0=0;QD=72.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339992    GT:AD:DP:GQ:PL    1/1:8,32:42:99:3104,120,0
10    124917238    rs2304550    T    C    1206.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368858    GT:AD:DP:GQ:PL    1/1:0,35:35:96.27:1240,96,0
10    124924402    rs7095154    C    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=63.51;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407911    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    124924484    rs36090124    CTT    C    461    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=68.0909;IndelType=D;MQ=61.34;MQ0=0;QD=28.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407911    GT:AD:DP:GQ:PL    1/1:0,16:16:48.11:503,48,0
10    124930954    rs141271646    CTTAT    C    1059.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=145.4613;IndelType=D;MQ=60.65;MQ0=0;QD=36.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-162A23.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469206    GT:AD:DP:GQ:PL    1/1:6,23:29:69.23:1101,69,0
10    124931515    rs11248426    T    C    158.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.43;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-162A23.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469206    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
10    125426412    rs12263344    A    G    521.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.43;SNPEFF_AMINO_ACID_CHANGE=P163;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_125425871_125426591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284674    GT:AD:DP:GQ:PL    1/1:0,19:19:45.12:554,45,0
10    125426565    rs4980313    G    C    455.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=26.81;SNPEFF_AMINO_ACID_CHANGE=L214;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_125425871_125426591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284674    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:489,39,0
10    125426627    rs3808964    G    T    210.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=21.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284674    GT:AD:DP:GQ:PL    1/1:0,10:10:21.02:243,21,0
10    125506302    rs7088479    T    C    2202.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5929;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=Q583R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_125505152_125506533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540123    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2236,172,0
10    125517080    rs4246949    T    C    123.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
10    125521533    rs10794566    G    A    1262.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.36;MQ0=0;QD=35.07;SNPEFF_AMINO_ACID_CHANGE=D377;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_125521388_125521685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540123    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1296,99,0
10    125521590    rs10794567    G    A    1628.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=Y21;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_125521388_125521685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368854    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1662,126,0
10    125521721    rs10751743    G    A    383.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=29.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:416,33,0
10    125521751    rs10794568    C    G    178.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:211,15,0
10    125526689    rs1896392    G    A    551.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.542;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=29.03;ReadPosRankSum=1.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    1/1:1,18:19:5.93:583,6,0
10    125527964    rs1219727    G    A    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
10    125528007    rs1219726    A    G    423.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:457,39,0
10    125528048    rs1219725    G    A    772.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.11;SNPEFF_AMINO_ACID_CHANGE=Y264;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_125528042_125528238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540123    GT:AD:DP:GQ:PL    1/1:0,22:22:63.17:805,63,0
10    125528297    rs1219724    T    G    570.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:604,48,0
10    125530746    rs727416    C    T    123.41    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=8.23;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    0/1:8,7:15:99:153,0,244
10    125622250    rs11299200    CA    C    851.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=3;HaplotypeScore=68.83;IndelType=D;MQ=60.83;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241305    GT:AD:DP:GQ:PL    1/1:2,24:26:72.23:893,72,0
10    125670941    rs74977435    C    A    704.31    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=46;Dels=0.0;FS=1.097;HRun=0;HaplotypeScore=0.9578;MQ=59.09;MQ0=0;MQRankSum=0.077;QD=15.31;ReadPosRankSum=0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368854    GT:AD:DP:GQ:PL    0/1:24,22:46:99:734,0,736
10    125673492    rs7893288    A    G    64.92    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.0;FS=6.64;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.467;QD=4.64;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368854    GT:AD:DP:GQ:PL    0/1:9,5:14:94.91:95,0,305
10    125673547    rs4329614    T    G    135.67    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.825;QD=12.33;ReadPosRankSum=2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368854    GT:AD:DP:GQ:PL    0/1:6,5:11:99:166,0,208
10    125780752    rs5788647    CG    C    40.04    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=11;FS=0.0;HRun=12;HaplotypeScore=84.658;IndelType=D;MQ=52.1;MQ0=0;MQRankSum=-0.731;QD=3.64;ReadPosRankSum=0.731;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_10_125780598_125780928;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST15;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000421115    GT:AD:DP:GQ:PL    0/1:5,5:11:0.71:78,0,1
10    125780958    rs9422312    C    T    222.66    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.0;FS=1.801;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.209;QD=9.68;ReadPosRankSum=0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346248    GT:AD:DP:GQ:PL    0/1:13,10:23:99:253,0,365
10    125801761    rs28698985    A    T    517.41    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.014;DB;DP=48;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.9894;MQ=59.52;MQ0=0;MQRankSum=-1.019;QD=10.78;ReadPosRankSum=-0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462406    GT:AD:DP:GQ:PL    0/1:26,22:48:99:547,0,704
10    125801809    rs28716482    C    A    739.46    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.779;DB;DP=55;Dels=0.0;FS=1.054;HRun=1;HaplotypeScore=1.5661;MQ=59.58;MQ0=0;MQRankSum=-0.926;QD=13.44;ReadPosRankSum=-1.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462406    GT:AD:DP:GQ:PL    0/1:28,27:55:99:769,0,842
10    125805631    rs34639461    G    A    536.62    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=52;Dels=0.0;FS=1.188;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.618;QD=10.32;ReadPosRankSum=-0.998;SNPEFF_AMINO_ACID_CHANGE=A33V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_125805183_125806240;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346248    GT:AD:DP:GQ:PL    0/1:30,22:52:99:567,0,929
10    126086326    rs2459216    G    A    99.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=9.91;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467675    GT:AD:DP:GQ:PL    0/1:6,4:10:99:129,0,159
10    126086730    rs2459217    G    A    503.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467675    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:536,39,0
10    126089275    rs2674335    C    T    74.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.38;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467675    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,108
10    126089656    rs2459215    T    G    93.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467675    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
10    126091814    rs2240882    A    C    104.47    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.61;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476917    GT:AD:DP:GQ:PL    0/1:4,5:9:99:134,0,142
10    126093991    rs9422807    T    C    1087.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476917    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1120,84,0
10    126096969    rs2674336    G    T    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490096    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:114,9,0
10    126100523    rs10794058    G    A    479.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.085;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.123;QD=13.32;ReadPosRankSum=-1.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368845    GT:AD:DP:GQ:PL    0/1:18,18:36:99:510,0,496
10    126100850    rs2674340    T    C    159.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368845    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:192,15,0
10    126172863    rs6597801    A    G    704.79    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.383;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=2.038;QD=14.68;ReadPosRankSum=0.921;SNPEFF_AMINO_ACID_CHANGE=Q94R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_126172708_126172895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHPP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368839    GT:AD:DP:GQ:PL    0/1:22,26:48:99:735,0,672
10    126185451    rs10794134    T    C    697.49    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.291;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.908;QD=13.16;ReadPosRankSum=-1.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487190    GT:AD:DP:GQ:PL    0/1:25,27:53:99:727,0,588
10    126185618    rs3824810    A    G    555.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.959;QD=10.1;ReadPosRankSum=-0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487190    GT:AD:DP:GQ:PL    0/1:33,22:55:99:586,0,1033
10    126185707    rs3824809    C    T    66.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.32;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487190    GT:AD:DP:GQ:PL    0/1:5,3:8:96.58:97,0,179
10    126186771    rs17620824    A    G    580.07    PASS    AB=0.24;AC=1;AF=0.50;AN=2;BaseQRankSum=2.831;DB;DP=25;Dels=0.0;FS=4.005;HRun=0;HaplotypeScore=1.7005;MQ=59.07;MQ0=0;MQRankSum=-1.75;QD=23.2;ReadPosRankSum=-0.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487190    GT:AD:DP:GQ:PL    0/1:6,19:25:99:610,0,126
10    126384610    rs10901807    G    A    369.49    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=4.215;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.55;QD=14.21;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM53B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280780    GT:AD:DP:GQ:PL    0/1:14,12:26:99:399,0,387
10    126395123    rs7897256    T    C    1643.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM53B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280780    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1677,129,0
10    126395144    rs76495587    C    T    965.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7985;MQ=59.65;MQ0=0;MQRankSum=-0.128;QD=14.62;ReadPosRankSum=-0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM53B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280780    GT:AD:DP:GQ:PL    0/1:33,33:66:99:995,0,1069
10    126505062    rs11451694    T    TA    1063.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.702;DB;DP=40;FS=0.0;HRun=10;HaplotypeScore=132.3801;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=-1.264;QD=26.59;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298492    GT:AD:DP:GQ:PL    1/1:3,36:40:86.46:1105,86,0
10    126517989    rs2303611    G    A    559.64    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.931;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=9.99;ReadPosRankSum=0.579;SNPEFF_AMINO_ACID_CHANGE=V202;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_126517962_126518046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM175B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298492    GT:AD:DP:GQ:PL    0/1:34,22:56:99:590,0,994
10    126660781    rs3802700    A    T    525.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRANB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359653    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:558,42,0
10    126662062    rs963340    G    A    238.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRANB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359653    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
10    126662451    rs3740534    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRANB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359653    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    126681219    rs62943061    G    C    326.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395705    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:359,30,0
10    126681688    rs7097802    T    C    204.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395705    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
10    126682041    rs74831105    T    C    62.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.48;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486955    GT:AD:DP:GQ:PL    0/1:3,3:6:92.85:93,0,108
10    126686827    rs1982225    T    A    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309035    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
10    126694106    .    G    A    718.29    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.197;QD=18.9;ReadPosRankSum=-1.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309035    GT:AD:DP:GQ:PL    0/1:14,24:38:99:748,0,319
10    126714641    rs12571821    G    C    551.65    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=0.421;QD=12.26;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309035    GT:AD:DP:GQ:PL    0/1:24,21:45:99:582,0,701
10    126714714    rs2946994    G    C    1314.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=Q539E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_126714651_126716459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309035    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1348,105,0
10    126714966    rs3012075    A    G    146.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_AMINO_ACID_CHANGE=Y455H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_126714651_126716459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309035    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:179,15,0
10    126715692    rs3781408    C    T    430.95    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=27;Dels=0.0;FS=1.527;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.14;QD=15.96;ReadPosRankSum=-0.51;SNPEFF_AMINO_ACID_CHANGE=D213N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_126714651_126716459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309035    GT:AD:DP:GQ:PL    0/1:13,14:27:99:461,0,392
10    126715803    rs141864737    CCT    C    522.29    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=2.529;DB;DP=25;FS=1.623;HRun=0;HaplotypeScore=81.179;IndelType=D;MQ=59.07;MQ0=0;MQRankSum=-1.169;QD=20.89;ReadPosRankSum=-1.441;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_10_126714651_126716459;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000309035    GT:AD:DP:GQ:PL    0/1:12,13:25:99:561,0,657
10    126716346    rs2938006    C    T    248.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337195    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
10    126856255    rs1715862    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-151A10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415184    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
10    126915217    rs10794207    T    C    68.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.38;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,3:6:98.27:98,0,101
10    126915374    rs10794208    T    C    368.25    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.753;QD=13.15;ReadPosRankSum=-1.505;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,17:28:99:398,0,390
10    127414554    rs11244625    T    C    51.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=1.231;QD=10.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf137;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337623    GT:AD:DP:GQ:PL    0/1:2,3:5:66.73:82,0,67
10    127426835    rs3943225    G    T    2060.80    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.761;DB;DP=112;Dels=0.0;FS=4.101;HRun=0;HaplotypeScore=0.6651;MQ=59.59;MQ0=0;MQRankSum=-0.418;QD=18.4;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C10orf137;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337623    GT:AD:DP:GQ:PL    0/1:46,66:112:99:2091,0,1346
10    127460753    rs7922546    G    A    616.90    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=1.174;DB;DP=38;Dels=0.0;FS=1.354;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.174;QD=16.23;ReadPosRankSum=-1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368808    GT:AD:DP:GQ:PL    0/1:15,23:38:99:647,0,410
10    127462525    rs10901425    A    G    115.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.46;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=V191A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_127462400_127462934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368808    GT:AD:DP:GQ:PL    0/1:4,4:8:99:146,0,130
10    127484957    rs2281953    G    T    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UROS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368786    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
10    127495856    .    A    C    37.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.44;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UROS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368778    GT:AD:DP:GQ:PL    0/1:3,2:5:67.19:67,0,108
10    127504660    rs2366044    A    G    668    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7074;MQ=58.79;MQ0=0;QD=29.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UROS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368774    GT:AD:DP:GQ:PL    1/1:0,23:23:57.15:701,57,0
10    127504998    rs17153575    C    T    662.84    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.075;DB;DP=48;Dels=0.0;FS=4.167;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.908;QD=13.81;ReadPosRankSum=-0.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UROS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368774    GT:AD:DP:GQ:PL    0/1:25,23:48:99:693,0,685
10    127529756    rs34263964    T    TTG    383.93    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.879;DB;DP=19;FS=3.14;HRun=0;HaplotypeScore=49.501;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=0.83;QD=20.21;ReadPosRankSum=-1.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCCIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278100    GT:AD:DP:GQ:PL    0/1:10,9:19:99:423,0,212
10    127548587    rs1539315    C    G    756.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284688    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:789,60,0
10    127585090    rs74635147    C    T    64.15    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.97;MQ=38.52;MQ0=0;MQRankSum=-0.727;QD=12.83;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415732    GT:AD:DP:GQ:PL    0/1:1,3:5:30.20:94,0,30
10    127585099    rs79920605    A    G    61.32    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9684;MQ=38.52;MQ0=0;MQRankSum=-0.731;QD=12.26;ReadPosRankSum=0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415732    GT:AD:DP:GQ:PL    0/1:1,4:5:27.28:91,0,27
10    127585112    rs72832617    T    C    33.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.55;MQ0=0;MQRankSum=-0.736;QD=8.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415732    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:64,0,33
10    127585169    rs78734655    G    C    60.21    SnpCluster    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=46.27;MQ0=0;MQRankSum=-1.231;QD=12.04;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415732    GT:AD:DP:GQ:PL    0/1:2,3:5:64.92:90,0,65
10    127585173    rs4010025    T    C    67.02    SnpCluster    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=46.27;MQ0=0;MQRankSum=-1.231;QD=13.4;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415732    GT:AD:DP:GQ:PL    0/1:2,3:5:62.06:97,0,62
10    127585179    rs74162871    G    C    52.41    SnpCluster    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=46.27;MQ0=0;MQRankSum=-1.231;QD=10.48;ReadPosRankSum=-0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415732    GT:AD:DP:GQ:PL    0/1:2,3:5:66.20:82,0,66
10    127585208    rs79274552    G    A    121.08    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=7.068;HRun=1;HaplotypeScore=0.9947;MQ=44.7;MQ0=0;MQRankSum=-1.221;QD=15.14;ReadPosRankSum=-0.956;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415732    GT:AD:DP:GQ:PL    0/1:3,5:8:88.99:151,0,89
10    127585237    rs5013589    C    T    135.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=44.7;MQ0=0;MQRankSum=-0.322;QD=16.97;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368693    GT:AD:DP:GQ:PL    0/1:3,5:8:38.12:166,0,38
10    127585260    rs4986789    G    T    103.10    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.71;MQ0=0;MQRankSum=0.731;QD=20.62;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368693    GT:AD:DP:GQ:PL    0/1:1,4:5:18.39:133,0,18
10    127585288    rs5013590    C    A    111.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.36;MQ0=0;QD=27.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368693    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
10    127585374    rs5013165    C    T    32.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=16.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368693    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
10    127668317    rs11244744    G    A    438.75    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.624;DB;DP=47;Dels=0.0;FS=1.998;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.624;QD=9.34;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368689    GT:AD:DP:GQ:PL    0/1:29,18:47:99:469,0,989
10    127668431    rs11244745    A    G    1006.24    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.214;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=10.7;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368689    GT:AD:DP:GQ:PL    0/1:57,37:94:99:1036,0,1783
10    127668487    rs2176097    G    A    493.25    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.385;DB;DP=53;Dels=0.0;FS=11.169;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.028;QD=9.31;ReadPosRankSum=1.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368689    GT:AD:DP:GQ:PL    0/1:35,18:53:99:523,0,1191
10    127668610    rs2138275    C    T    104.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.41;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368689    GT:AD:DP:GQ:PL    0/1:6,4:10:99:134,0,225
10    127677374    rs2280173    A    G    261.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.168;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.746;QD=12.43;ReadPosRankSum=1.03;SNPEFF_AMINO_ACID_CHANGE=N143S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_127677120_127678056;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449042    GT:AD:DP:GQ:PL    0/1:12,9:21:99:291,0,391
10    127677676    rs2277217    G    A    113.84    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.198;QD=16.26;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368689    GT:AD:DP:GQ:PL    0/1:2,5:7:43.09:144,0,43
10    127685091    rs3736477    T    C    1012.94    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.172;DB;DP=76;Dels=0.0;FS=4.039;HRun=0;HaplotypeScore=1.5115;MQ=59.7;MQ0=0;MQRankSum=0.634;QD=13.33;ReadPosRankSum=0.229;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368689    GT:AD:DP:GQ:PL    0/1:39,37:76:99:1043,0,1226
10    127685323    rs10901503    C    T    229.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.356;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.119;QD=11.49;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368689    GT:AD:DP:GQ:PL    0/1:12,8:20:99:260,0,351
10    127693432    rs2138283    C    T    1573.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368691    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1607,117,0
10    127693734    rs2271651    G    A    164.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368691    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
10    127693785    rs2271650    T    G    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368691    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
10    127697165    rs2292690    T    G    279.76    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.789;DB;DP=24;Dels=0.0;FS=2.114;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.06;QD=11.66;ReadPosRankSum=1.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368679    GT:AD:DP:GQ:PL    0/1:15,9:24:99:310,0,477
10    127708428    rs2138280    A    T    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=3.76;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368679    GT:AD:DP:GQ:PL    0/1:6,3:9:63.82:64,0,134
10    127727752    rs11594171    G    A    175.77    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;MQRankSum=0.312;QD=13.52;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    0/1:6,7:13:99:206,0,179
10    127731846    rs10901522    G    A    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    127731887    rs10901523    G    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    127734513    rs1710313    A    C    520.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467145    GT:AD:DP:GQ:PL    1/1:0,17:17:42.11:554,42,0
10    127734716    rs11244787    A    G    789.39    PASS    AB=0.065;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.121;QD=25.46;ReadPosRankSum=-0.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467145    GT:AD:DP:GQ:PL    0/1:2,29:31:10.75:819,0,11
10    127734834    rs11244788    C    T    167.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467145    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
10    127734836    rs11244789    G    A    155.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467145    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:189,15,0
10    127737930    rs2292692    G    A    4487.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.134;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6476;MQ=59.84;MQ0=0;MQRankSum=1.707;QD=31.82;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=P606;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_127737822_127738020;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    1/1:1,140:141:99:4487,346,0
10    127738280    rs11406158    AT    A    327.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=114.6629;IndelType=D;MQ=58.3;MQ0=0;MQRankSum=1.531;QD=15.6;ReadPosRankSum=1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    1/1:4,17:21:46.91:370,47,0
10    127753274    rs1278278    G    A    72.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    1/1:0,3:3:9:105,9,0
10    127753478    rs1278279    G    A    367.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=N505;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_127753375_127753570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:400,30,0
10    127759821    rs1152656    A    G    78.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
10    127782409    rs1871054    C    T    471.34    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.228;QD=12.4;ReadPosRankSum=-1.565;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368676    GT:AD:DP:GQ:PL    0/1:19,18:38:99:501,0,679
10    127786969    rs2290842    A    G    3989.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448723    GT:AD:DP:GQ:PL    1/1:0,120:120:99:3990,319,0
10    127787142    rs2290844    T    C    434.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=13.15;ReadPosRankSum=0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448723    GT:AD:DP:GQ:PL    0/1:18,15:33:99:464,0,658
10    127789598    rs2290845    A    G    343.83    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.578;MQ=58.13;MQ0=0;MQRankSum=1.333;QD=13.75;ReadPosRankSum=-0.753;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448723    GT:AD:DP:GQ:PL    0/1:12,13:25:99:374,0,319
10    128153623    rs7079392    G    A    316.95    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.684;QD=12.68;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284694    GT:AD:DP:GQ:PL    0/1:11,14:25:99:347,0,374
10    128191222    rs61863954    A    G    390.15    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.866;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.094;QD=16.96;ReadPosRankSum=-1.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368674    GT:AD:DP:GQ:PL    0/1:9,14:23:99:420,0,289
10    128191368    rs10510159    T    C    1599.03    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.267;DB;DP=125;Dels=0.0;FS=7.313;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.809;QD=12.79;ReadPosRankSum=-0.275;SNPEFF_AMINO_ACID_CHANGE=M380V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_128191229_128191403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368674    GT:AD:DP:GQ:PL    0/1:71,54:125:99:1629,0,2352
10    128202435    rs1436803    T    C    509.36    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.176;DB;DP=41;Dels=0.0;FS=1.302;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.636;QD=12.42;ReadPosRankSum=1.285;SNPEFF_AMINO_ACID_CHANGE=A129;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_128202417_128202508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544758    GT:AD:DP:GQ:PL    0/1:21,20:41:99:539,0,584
10    128209769    rs2099552    T    C    256.88    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=17.13;ReadPosRankSum=1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284694    GT:AD:DP:GQ:PL    0/1:7,8:15:99:287,0,244
10    128209797    rs2099553    C    T    235.63    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=16;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=14.73;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284694    GT:AD:DP:GQ:PL    0/1:7,9:16:99:266,0,236
10    128209959    rs4962342    G    T    476.26    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DB;DP=27;Dels=0.0;FS=5.63;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.527;QD=17.64;ReadPosRankSum=1.23;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_128209868_128210010;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284694    GT:AD:DP:GQ:PL    0/1:10,17:27:99:506,0,338
10    128245579    .    T    TA    260.65    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DP=41;FS=1.574;HRun=17;HaplotypeScore=473.4999;IndelType=I;MQ=46.22;MQ0=0;MQRankSum=0.876;QD=6.36;ReadPosRankSum=-0.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544758    GT:AD:DP:GQ:PL    0/1:16,19:41:52.12:300,0,52
10    128245665    rs12784273    G    A    2207.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.253;DB;DP=70;Dels=0.0;FS=4.907;HRun=1;HaplotypeScore=0.0;MQ=57.31;MQ0=0;MQRankSum=1.199;QD=31.53;ReadPosRankSum=-1.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544758    GT:AD:DP:GQ:PL    1/1:1,69:70:99:2240,135,0
10    128788633    rs3750560    C    A    536.79    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.338;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.197;QD=18.51;ReadPosRankSum=1.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:13,16:29:99:567,0,454
10    128810685    rs1890872    T    C    644.58    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.214;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=14.99;ReadPosRankSum=0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:22,21:43:99:675,0,723
10    128821616    rs9418791    T    G    2426.27    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=6.021;DB;DP=203;Dels=0.0;FS=2.538;HRun=1;HaplotypeScore=4.9901;MQ=58.86;MQ0=0;MQRankSum=0.179;QD=11.95;ReadPosRankSum=1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:106,96:203:99:2456,0,3031
10    128821636    rs9418698    C    T    2360.88    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.416;DB;DP=166;Dels=0.0;FS=4.176;HRun=0;HaplotypeScore=4.4901;MQ=59.16;MQ0=0;MQRankSum=0.183;QD=14.22;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:84,82:166:99:2391,0,2421
10    128822873    rs3818879    A    G    170.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=9.48;ReadPosRankSum=-1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:10,8:18:99:201,0,319
10    128822886    rs3818880    G    A    273.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.088;QD=15.17;ReadPosRankSum=-0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:9,9:18:99:303,0,279
10    128836214    rs7085407    G    C    81.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
10    128840712    rs880271    G    A    100.32    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:1,4:5:18.41:130,0,18
10    128840842    rs880272    A    G    1645.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.02;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1678,141,0
10    128850789    rs72279241    CAA    C    177.74    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=18;FS=0.0;HRun=15;HaplotypeScore=146.1912;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=-0.146;QD=9.87;ReadPosRankSum=-0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:3,10:18:13.20:217,0,13
10    128850841    rs9418817    T    C    1110.25    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.464;DB;DP=75;Dels=0.0;FS=3.074;HRun=0;HaplotypeScore=2.6183;MQ=59.69;MQ0=0;MQRankSum=-0.323;QD=14.8;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:40,35:75:99:1140,0,1195
10    128851117    rs41300568    G    T    760.24    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.047;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.099;QD=12.07;ReadPosRankSum=0.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:33,30:63:99:790,0,1065
10    128923954    rs1186355    A    C    995.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=0.714;QD=29.28;ReadPosRankSum=-0.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:1,33:34:84.26:1028,84,0
10    128925761    rs1153016    A    T    321.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:354,27,0
10    128926013    rs1060561    A    G    1902.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=R923;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_128925933_128926028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1935,144,0
10    128944080    rs2489392    C    T    75.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:107,9,0
10    128952219    rs34225417    C    T    91.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=58.45;MQ0=0;MQRankSum=1.002;QD=6.13;ReadPosRankSum=-1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:9,6:15:99:122,0,266
10    128952265    rs7068954    A    G    478.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.33;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:512,39,0
10    128974220    rs11594560    G    A    459.31    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.258;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.695;QD=14.35;ReadPosRankSum=0.179;SNPEFF_AMINO_ACID_CHANGE=A147V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_128973476_128974664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM196A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424811    GT:AD:DP:GQ:PL    0/1:15,17:32:99:489,0,397
10    128974621    rs2489386    C    T    1165.25    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=5.042;DB;DP=77;Dels=0.0;FS=4.864;HRun=0;HaplotypeScore=0.6651;MQ=58.73;MQ0=0;MQRankSum=1.83;QD=15.13;ReadPosRankSum=-0.515;SNPEFF_AMINO_ACID_CHANGE=T13;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_128973476_128974664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM196A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424811    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1195,0,960
10    128974713    rs2489385    C    T    247.50    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=-0.033;QD=11.25;ReadPosRankSum=-2.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:12,10:22:99:277,0,383
10    128974716    rs2489384    A    G    193.13    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=10.73;ReadPosRankSum=-2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:11,7:18:99:223,0,394
10    129046407    rs3740013    T    C    2017.81    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.209;DB;DP=143;Dels=0.0;FS=3.345;HRun=0;HaplotypeScore=1.8938;MQ=59.38;MQ0=0;MQRankSum=1.257;QD=14.11;ReadPosRankSum=0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:65,78:143:99:2048,0,1965
10    129142265    rs943207    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    129179739    rs1998864    T    G    194.57    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.588;QD=11.45;ReadPosRankSum=1.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:9,8:17:99:225,0,330
10    129182958    rs878564    C    T    78.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.73;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:109,0,70
10    129183002    rs878563    C    T    107.72    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.685;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.474;QD=6.34;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:12,5:17:99:138,0,388
10    129183015    rs878562    T    G    149.32    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.803;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9399;MQ=58.78;MQ0=0;MQRankSum=-1.902;QD=7.86;ReadPosRankSum=-0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:12,7:19:99:179,0,374
10    129183372    rs2274377    T    A    82.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=11.8;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:3,4:7:99:113,0,99
10    129208894    rs6482874    A    G    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
10    129208954    rs11017943    T    G    123.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.221;QD=15.45;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:3,5:8:94.65:154,0,95
10    129209084    rs2296628    A    G    1024.33    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.8;MQ0=0;MQRankSum=-0.507;QD=17.66;ReadPosRankSum=0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:25,33:58:99:1054,0,732
10    129213631    rs3736939    A    G    118.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:151,12,0
10    129217817    rs77994677    G    T    60.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=5.03;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:8,4:12:90.38:90,0,243
10    129237572    rs1926427    G    A    540.16    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.219;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.629;QD=13.5;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:23,17:40:99:570,0,805
10    129242182    rs7075546    A    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    129242515    rs11371    G    A    843.35    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.568;DB;DP=76;Dels=0.0;FS=1.139;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.233;QD=11.1;ReadPosRankSum=0.589;SNPEFF_AMINO_ACID_CHANGE=R1774;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129242390_129242543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:46,30:76:99:873,0,1507
10    129242555    rs2275053    G    A    453.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.305;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=59.56;MQ0=0;MQRankSum=-1.322;QD=8.72;ReadPosRankSum=-0.994;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:32,20:52:99:484,0,1055
10    129245628    rs869800    G    A    69.91    PASS    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.771;QD=3.04;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:19,4:23:99:100,0,643
10    129245684    rs869801    G    A    91.14    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.097;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.37;QD=2.76;ReadPosRankSum=0.456;SNPEFF_AMINO_ACID_CHANGE=A1793T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129245658_129245809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:26,7:33:99:121,0,848
10    129245967    rs873185    G    A    140.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.191;QD=11.72;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    0/1:6,6:12:99:171,0,214
10    129249662    rs2229603    G    A    1162.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=A1857T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129249596_129250781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1195,90,0
10    129249676    rs2229604    C    T    1068.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.975;QD=32.39;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S1861;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129249596_129250781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:1,32:33:51.15:1102,51,0
10    129249693    rs2229605    G    A    840.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.179;QD=28.0;ReadPosRankSum=1.016;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:1,29:30:35.89:873,36,0
10    129249701    rs2229606    C    G    823.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.29;MQ0=0;QD=31.69;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280333    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:857,66,0
10    129536642    rs7085541    G    A    89.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388920    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    129536648    rs7085544    G    T    72.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388920    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
10    129682249    rs10765177    T    C    234.75    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.772;QD=15.65;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368671    GT:AD:DP:GQ:PL    0/1:7,8:15:99:265,0,241
10    129682311    rs7082389    G    A    72.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.57;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368671    GT:AD:DP:GQ:PL    0/1:2,3:5:70.24:103,0,70
10    129845625    rs61758315    G    A    103.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.307;QD=11.51;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254667    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,171
10    129845903    rs7912703    C    T    379.88    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8413;MQ=59.36;MQ0=0;MQRankSum=-0.085;QD=10.55;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254667    GT:AD:DP:GQ:PL    0/1:23,13:36:99:410,0,687
10    129846010    rs7911904    G    A    458.73    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=46;Dels=0.0;FS=1.189;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.931;QD=9.97;ReadPosRankSum=-0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254667    GT:AD:DP:GQ:PL    0/1:27,19:46:99:489,0,739
10    129854369    rs4424589    T    C    2445.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254667    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2478,184,0
10    129854550    rs11016041    G    A    333.06    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.262;QD=14.48;ReadPosRankSum=1.446;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455661    GT:AD:DP:GQ:PL    0/1:12,11:23:99:363,0,419
10    129854704    rs4328146    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455661    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
10    129859061    rs28411949    T    C    78.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455661    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
10    129859065    rs11016046    T    C    81.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455661    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
10    129859408    rs55962763    T    C    128.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455661    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
10    129859992    rs4462251    T    C    513.02    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.349;QD=13.87;ReadPosRankSum=1.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254667    GT:AD:DP:GQ:PL    0/1:18,19:37:99:543,0,508
10    129864515    rs10764743    C    T    1620.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254667    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1653,123,0
10    129867815    rs4350282    T    C    372.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430713    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:405,30,0
10    129869233    rs10829325    A    G    472.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430713    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:505,39,0
10    129874744    rs5788890    G    GT    283.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DB;DP=14;FS=0.0;HRun=11;HaplotypeScore=89.2194;IndelType=I;MQ=51.5;MQ0=0;MQRankSum=-1.737;QD=20.24;ReadPosRankSum=-1.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463727    GT:AD:DP:GQ:PL    1/1:2,8:14:15.71:325,16,0
10    129875235    rs4304675    A    G    131.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463727    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
10    129899578    rs8473    T    C    907.32    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.297;DB;DP=62;Dels=0.0;FS=9.054;HRun=0;HaplotypeScore=0.9999;MQ=59.63;MQ0=0;MQRankSum=-1.218;QD=14.63;ReadPosRankSum=-0.036;SNPEFF_AMINO_ACID_CHANGE=K2857E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129899522_129899965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:26,36:62:99:937,0,839
10    129899778    rs11106    G    C    1606.54    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.011;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8991;MQ=59.81;MQ0=0;MQRankSum=-1.87;QD=16.39;ReadPosRankSum=1.116;SNPEFF_AMINO_ACID_CHANGE=T2790S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129899522_129899965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:42,56:98:99:1637,0,1367
10    129900858    rs3191122    C    T    1791.70    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=4.195;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=1.872;QD=13.68;ReadPosRankSum=-0.881;SNPEFF_AMINO_ACID_CHANGE=S2722;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:71,60:131:99:1822,0,1967
10    129901501    rs2071496    G    C    888.35    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.15;DB;DP=65;Dels=0.0;FS=2.176;HRun=0;HaplotypeScore=2.2337;MQ=59.65;MQ0=0;MQRankSum=0.585;QD=13.67;ReadPosRankSum=-0.706;SNPEFF_AMINO_ACID_CHANGE=T2508S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:34,31:65:99:918,0,1038
10    129901747    rs10764749    C    T    1037.70    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.244;DB;DP=79;Dels=0.0;FS=2.203;HRun=0;HaplotypeScore=3.4058;MQ=57.02;MQ0=0;MQRankSum=-2.206;QD=13.14;ReadPosRankSum=1.305;SNPEFF_AMINO_ACID_CHANGE=R2426Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:41,38:79:99:1068,0,722
10    129902281    rs1063535    G    A    578.82    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=56;Dels=0.0;FS=6.129;HRun=0;HaplotypeScore=1.8606;MQ=59.59;MQ0=0;MQRankSum=-2.031;QD=10.34;ReadPosRankSum=-0.592;SNPEFF_AMINO_ACID_CHANGE=P2248L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:35,21:56:99:609,0,1208
10    129903016    rs7071768    T    C    3795.75    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=3.401;DB;DP=249;DS;Dels=0.0;FS=0.47;HRun=0;HaplotypeScore=1.8561;MQ=59.44;MQ0=0;MQRankSum=1.418;QD=15.24;ReadPosRankSum=0.493;SNPEFF_AMINO_ACID_CHANGE=N2003S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:122,126:249:99:3796,0,3565
10    129903465    rs2857028    A    G    2412.73    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.838;DB;DP=172;Dels=0.0;FS=3.656;HRun=0;HaplotypeScore=2.5873;MQ=59.3;MQ0=0;MQRankSum=1.263;QD=14.03;ReadPosRankSum=-0.716;SNPEFF_AMINO_ACID_CHANGE=H1853;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:82,90:172:99:2443,0,2462
10    129903802    rs11016073    A    G    3109.58    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=6.175;DB;DP=213;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4635;MQ=59.68;MQ0=0;MQRankSum=1.734;QD=14.6;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=I1741T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:108,105:213:99:3140,0,3185
10    129904560    rs2853346    C    T    1496.33    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=4.005;DB;DP=116;Dels=0.0;FS=14.781;HRun=1;HaplotypeScore=0.9983;MQ=59.8;MQ0=0;MQRankSum=1.304;QD=12.9;ReadPosRankSum=1.67;SNPEFF_AMINO_ACID_CHANGE=T1488;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:66,50:116:99:1526,0,2044
10    129905896    rs3740423    T    A    1730.03    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.356;DB;DP=118;Dels=0.0;FS=7.158;HRun=0;HaplotypeScore=2.6124;MQ=59.8;MQ0=0;MQRankSum=0.183;QD=14.66;ReadPosRankSum=0.682;SNPEFF_AMINO_ACID_CHANGE=E1043V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    0/1:55,63:118:99:1760,0,1587
10    129906980    rs2152143    C    T    2420.29    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=4.143;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6347;MQ=59.64;MQ0=0;MQRankSum=1.051;QD=14.41;ReadPosRankSum=0.617;SNPEFF_AMINO_ACID_CHANGE=G1041S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129900843_129907687;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537609    GT:AD:DP:GQ:PL    0/1:90,78:168:99:2450,0,2538
10    129907741    rs2065718    G    A    815.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484853    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:848,63,0
10    129911919    rs12255393    T    A    142.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.299;DB;DP=14;Dels=0.0;FS=1.987;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.068;QD=10.21;ReadPosRankSum=-0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478293    GT:AD:DP:GQ:PL    0/1:7,7:14:99:173,0,254
10    129917560    rs2071498    T    C    1326.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_AMINO_ACID_CHANGE=N104S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_129917517_129917583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKI67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368653    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1359,99,0
10    131334789    rs10734087    T    C    105.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306010    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:138,12,0
10    131557646    rs2308323    G    T    158.75    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.853;QD=7.22;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306010    GT:AD:DP:GQ:PL    0/1:14,8:22:99:189,0,432
10    131641361    rs113374013    T    TG    175.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=26.4024;IndelType=I;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355311    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:217,18,0
10    131665885    rs12572694    G    A    114.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355311    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
10    131760352    rs573370    A    G    225.31    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.98;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=11.86;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355311    GT:AD:DP:GQ:PL    0/1:10,9:19:99:255,0,344
10    131943423    rs7073590    G    T    248.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.208;QD=15.54;ReadPosRankSum=-0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331244    GT:AD:DP:GQ:PL    0/1:8,8:16:99:279,0,269
10    131943719    rs7922450    T    G    131.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331244    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
10    131958422    rs1013563    G    A    409.27    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.442;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.066;QD=14.11;ReadPosRankSum=0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331244    GT:AD:DP:GQ:PL    0/1:16,13:29:99:439,0,588
10    131958960    rs1571457    T    G    188.99    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=15.75;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331244    GT:AD:DP:GQ:PL    0/1:5,7:12:99:219,0,168
10    131965392    rs7078860    A    G    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331244    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
10    131973459    rs7918967    T    G    70.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331244    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,126
10    132891254    rs76672112    G    A    210.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483040    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
10    132891794    rs12356313    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCERG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368642    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    133607892    rs4897739    T    C    213.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:247,18,0
10    133607904    rs4897781    G    A    176.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.05;SNPEFF_AMINO_ACID_CHANGE=R158W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133607220_133608631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:209,15,0
10    133607937    rs4897782    G    A    204.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.0;SNPEFF_AMINO_ACID_CHANGE=R147W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133607220_133608631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
10    133607947    rs4897740    T    G    246.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=R143;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133607220_133608631;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
10    133608210    rs4897741    A    G    231.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=C56R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133607220_133608631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:264,21,0
10    133608237    rs4897783    G    A    189.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=31.53;SNPEFF_AMINO_ACID_CHANGE=R47W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133607220_133608631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:222,18,0
10    133608291    rs4897742    T    G    242.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.3;SNPEFF_AMINO_ACID_CHANGE=S29R;SNPEFF_CODON_CHANGE=Agc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133607220_133608631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:275,24,0
10    133608292    rs4897743    T    G    277.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.71;SNPEFF_AMINO_ACID_CHANGE=R28S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133607220_133608631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:311,24,0
10    133608495    rs4897744    A    T    201.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.24;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_133607220_133608631;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL450307.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341866    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:235,18,0
10    133758947    .    C    T    447.41    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.32;QD=13.16;ReadPosRankSum=-0.669;SNPEFF_AMINO_ACID_CHANGE=C237;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133758799_133758963;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R2D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455566    GT:AD:DP:GQ:PL    0/1:19,15:34:99:477,0,501
10    133948439    rs11146206    C    T    80.23    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=20;Dels=0.0;FS=2.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.01;ReadPosRankSum=1.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:15,5:20:99:110,0,531
10    133948456    rs2637643    C    T    212.42    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=29;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.165;QD=7.32;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:20,9:29:99:242,0,631
10    133948634    rs2814182    T    C    480.36    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.789;DB;DP=39;Dels=0.0;FS=6.666;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.155;QD=12.32;ReadPosRankSum=-0.634;SNPEFF_AMINO_ACID_CHANGE=N313;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133948545_133948664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:21,18:39:99:510,0,749
10    133948689    rs2637644    C    T    163.93    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=18;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.9469;MQ=58.71;MQ0=0;MQRankSum=0.453;QD=9.11;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:11,7:18:99:194,0,285
10    133950408    rs2818390    C    T    366.98    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.25;MQ0=0;MQRankSum=0.251;QD=19.31;ReadPosRankSum=-1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:6,13:19:99:397,0,182
10    133951501    rs66482956    CA    C    280.43    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=2.822;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=83.8029;IndelType=D;MQ=59.94;MQ0=0;MQRankSum=0.155;QD=12.19;ReadPosRankSum=-1.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:13,10:23:99:319,0,516
10    133954011    rs2818387    C    T    646    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=4.082;DB;DP=61;Dels=0.0;FS=5.927;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-1.083;QD=10.59;ReadPosRankSum=0.188;SNPEFF_AMINO_ACID_CHANGE=D467;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133953955_133954083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:34,27:61:99:676,0,911
10    133954111    rs9733324    G    C    212.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.014;QD=7.88;ReadPosRankSum=0.894;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:18,9:27:99:243,0,493
10    133955427    rs11592585    A    G    221.34    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.473;DB;DP=22;Dels=0.0;FS=3.821;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=10.06;ReadPosRankSum=2.209;SNPEFF_AMINO_ACID_CHANGE=M493V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133955424_133955552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:12,10:22:99:251,0,366
10    133955569    rs5789117    C    CCG    848.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=45.9148;IndelType=I;MQ=60.0;MQ0=0;QD=42.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    1/1:3,17:20:51.17:890,51,0
10    133961494    rs2818384    C    T    567.86    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.105;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.81;MQ0=0;MQRankSum=0.969;QD=14.56;ReadPosRankSum=0.014;SNPEFF_AMINO_ACID_CHANGE=H596;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_133961456_133961554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:19,20:39:99:598,0,492
10    133961564    rs2818383    T    C    329.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.256;DB;DP=28;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.0;MQ=55.91;MQ0=0;MQRankSum=-0.564;QD=11.77;ReadPosRankSum=-1.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:14,14:28:99:360,0,313
10    133963466    rs9419380    A    G    239.89    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.791;QD=8.57;ReadPosRankSum=0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:18,10:28:99:270,0,543
10    133967593    rs7906747    C    T    102.30    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=8.52;ReadPosRankSum=-1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:7,5:12:99:132,0,246
10    133976706    rs12776458    G    T    80.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.51;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:3,4:7:85.77:111,0,86
10    133978507    rs2246977    G    T    39.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.93;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAKMIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298622    GT:AD:DP:GQ:PL    0/1:2,2:4:56.59:70,0,57
10    134010224    rs1552681    C    G    89.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=11.16;ReadPosRankSum=-1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493927    GT:AD:DP:GQ:PL    0/1:4,4:8:99:119,0,128
10    134013856    rs871883    G    T    409.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.282;DB;DP=26;Dels=0.0;FS=1.721;HRun=1;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;MQRankSum=0.462;QD=15.75;ReadPosRankSum=-0.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493882    GT:AD:DP:GQ:PL    0/1:13,13:26:99:439,0,398
10    134013990    rs2247705    G    A    1278.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=A214;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134013860_134014016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368627    GT:AD:DP:GQ:PL    1/1:0,43:43:96.31:1312,96,0
10    134016115    rs2637629    G    A    259.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=24;Dels=0.0;FS=12.704;HRun=0;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;MQRankSum=0.157;QD=10.81;ReadPosRankSum=-0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298630    GT:AD:DP:GQ:PL    0/1:14,10:24:99:289,0,409
10    134016396    rs3736258    G    A    189.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.299;QD=13.56;ReadPosRankSum=-1.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298630    GT:AD:DP:GQ:PL    0/1:7,7:14:99:220,0,222
10    134017295    rs12313    A    G    161.52    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.63;MQ0=0;MQRankSum=0.625;QD=9.5;ReadPosRankSum=-2.069;SNPEFF_AMINO_ACID_CHANGE=G337;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134017266_134017431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPYSL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368627    GT:AD:DP:GQ:PL    0/1:9,8:17:99:192,0,289
10    134036193    rs2818401    A    G    218.30    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=2.54;DB;DP=16;Dels=0.0;FS=5.021;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=13.64;ReadPosRankSum=-0.423;SNPEFF_AMINO_ACID_CHANGE=R284;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134036145_134036276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368622    GT:AD:DP:GQ:PL    0/1:7,9:16:99:248,0,227
10    134038647    rs902628    A    G    31.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=7.85;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:61,0,70
10    134039242    rs2130894    C    T    2319.98    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.759;DB;DP=182;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=7.9449;MQ=59.67;MQ0=0;MQRankSum=-0.5;QD=12.75;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    0/1:96,85:182:99:2350,0,3038
10    134040290    rs2306982    C    A    458.83    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=38;Dels=0.0;FS=1.547;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=1.043;QD=12.07;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    0/1:21,17:38:99:489,0,626
10    134059366    rs3829920    C    T    440.70    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.386;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.117;QD=20.03;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298630    GT:AD:DP:GQ:PL    0/1:6,16:22:99:471,0,197
10    134059616    rs3814609    G    A    31.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298630    GT:AD:DP:GQ:PL    0/1:4,2:6:61.97:62,0,149
10    134137627    rs7914257    T    C    884.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:917,66,0
10    134143942    rs1052281    C    T    2298.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2331,178,0
10    134143985    rs1132165    G    T    1215.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.85;MQ0=0;QD=18.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1248,141,0
10    134143986    rs1132164    C    T    1214.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=55.91;MQ0=0;QD=18.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1248,141,0
10    134144005    rs7085852    T    C    631.54    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5366;MQ=56.35;MQ0=0;MQRankSum=0.146;QD=12.15;ReadPosRankSum=1.563;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    0/1:28,24:52:99:662,0,861
10    134145136    rs7086691    A    G    1484.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.01;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=G35;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134144940_134145326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368625    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1517,120,0
10    134145138    rs7080014    C    G    1421.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.01;MQ0=0;QD=30.25;SNPEFF_AMINO_ACID_CHANGE=G35R;SNPEFF_CODON_CHANGE=Ggt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134144940_134145326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368625    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1455,123,0
10    134145153    rs7100410    G    A    391.02    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=44;Dels=0.0;FS=4.677;HRun=0;HaplotypeScore=0.734;MQ=57.33;MQ0=0;MQRankSum=-0.43;QD=8.89;ReadPosRankSum=-0.848;SNPEFF_AMINO_ACID_CHANGE=H30Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134144940_134145326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368625    GT:AD:DP:GQ:PL    0/1:23,21:44:99:421,0,656
10    134145166    rs13882    T    C    1246.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=31.17;SNPEFF_AMINO_ACID_CHANGE=E25;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134144940_134145326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368625    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1280,99,0
10    134145288    rs12778987    C    A    266.30    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.939;DB;DP=24;Dels=0.0;FS=1.674;HRun=1;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=1.323;QD=10.65;ReadPosRankSum=0.769;SNPEFF_AMINO_ACID_CHANGE=V22F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134144940_134145351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    0/1:11,13:24:99:296,0,341
10    134145293    rs12784130    G    T    704.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=30.62;SNPEFF_AMINO_ACID_CHANGE=A20E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134144940_134145351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:737,57,0
10    134145336    rs12784321    G    T    597.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=R6S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134144940_134145351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK32C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368620    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:631,48,0
10    134147341    rs12416634    T    A    508.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344079    GT:AD:DP:GQ:PL    1/1:0,15:15:45.09:542,45,0
10    134150217    rs114468923    A    G    248.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.561;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.325;QD=13.81;ReadPosRankSum=-0.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344079    GT:AD:DP:GQ:PL    0/1:9,9:18:99:279,0,331
10    134151034    rs2259594    A    G    969.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344079    GT:AD:DP:GQ:PL    1/1:0,30:30:72.24:1003,72,0
10    134151288    rs2259600    A    G    489.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.77;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344079    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:522,39,0
10    134151343    rs3215605    GT    G    191.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=26.6989;IndelType=D;MQ=61.78;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344079    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
10    134157875    rs2698779    G    A    103.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.28;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344079    GT:AD:DP:GQ:PL    0/1:2,4:6:56.73:134,0,57
10    134158316    rs2260876    A    C    100.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344079    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:133,12,0
10    134161517    rs2474329    C    T    1467.74    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.729;DB;DP=104;Dels=0.0;FS=0.77;HRun=0;HaplotypeScore=0.7887;MQ=59.33;MQ0=0;MQRankSum=-1.052;QD=14.11;ReadPosRankSum=-0.645;SNPEFF_AMINO_ACID_CHANGE=R133C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134161488_134161860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368610    GT:AD:DP:GQ:PL    0/1:56,48:104:99:1498,0,1356
10    134161633    rs2474328    A    G    1729.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.63;MQ0=0;QD=34.59;SNPEFF_AMINO_ACID_CHANGE=P106;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134161488_134161860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432555    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1763,141,0
10    134165291    rs2261222    C    G    1021.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356571    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1055,84,0
10    134165439    rs3117448    T    C    89.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356571    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    134166273    rs72479351    A    G    632.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356571    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:666,51,0
10    134174753    rs2474338    G    A    68.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.17;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368610    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:99,0,30
10    134175372    rs2497649    A    G    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=19.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472387    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
10    134210861    .    C    A    33.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=1.38;QD=5.58;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWWP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305233    GT:AD:DP:GQ:PL    0/1:4,2:6:63.49:63,0,129
10    134217955    rs56915971    C    T    181.04    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=2.074;QD=13.93;ReadPosRankSum=2.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWWP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305233    GT:AD:DP:GQ:PL    0/1:7,6:13:99:211,0,228
10    134218269    rs11146363    C    T    319.84    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.285;DB;DP=38;Dels=0.0;FS=3.388;HRun=0;HaplotypeScore=8.1436;MQ=52.1;MQ0=0;MQRankSum=0.02;QD=8.42;ReadPosRankSum=0.929;SNPEFF_AMINO_ACID_CHANGE=R89C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134218130_134219793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWWP2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305233    GT:AD:DP:GQ:PL    0/1:20,17:38:99:350,0,288
10    134218296    rs10747057    C    G    196.62    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=28;Dels=0.0;FS=3.233;HRun=1;HaplotypeScore=4.6994;MQ=50.16;MQ0=0;MQRankSum=0.317;QD=7.02;ReadPosRankSum=-1.936;SNPEFF_AMINO_ACID_CHANGE=R98G;SNPEFF_CODON_CHANGE=Cgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134218130_134219793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWWP2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305233    GT:AD:DP:GQ:PL    0/1:16,12:28:99:227,0,176
10    134421225    rs111705260    C    T    419.80    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.141;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.705;QD=18.25;ReadPosRankSum=1.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368593    GT:AD:DP:GQ:PL    0/1:8,15:23:99:450,0,205
10    134463809    rs117889312    G    A    527.15    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.464;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7196;MQ=59.05;MQ0=0;MQRankSum=-1.054;QD=10.76;ReadPosRankSum=0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368593    GT:AD:DP:GQ:PL    0/1:30,19:49:99:557,0,986
10    134511281    rs56379592    G    A    307.43    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=23.65;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368593    GT:AD:DP:GQ:PL    0/1:4,9:13:99:337,0,123
10    134523972    rs139481250    C    T    195.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.042;QD=9.33;ReadPosRankSum=0.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368595    GT:AD:DP:GQ:PL    0/1:12,9:21:99:226,0,322
10    134594490    .    G    A    180.78    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.52;MQ0=0;MQRankSum=-0.965;QD=12.05;ReadPosRankSum=1.468;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368593    GT:AD:DP:GQ:PL    0/1:6,8:15:99:211,0,163
10    134598628    rs2804003    A    G    556.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=V209A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134598297_134598674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX6-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368592    GT:AD:DP:GQ:PL    1/1:0,17:17:48.12:590,48,0
10    134622408    rs2767434    T    C    94.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.922;QD=11.79;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=D184G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134621896_134622408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435957    GT:AD:DP:GQ:PL    0/1:4,4:8:90.30:124,0,90
10    134623959    rs2254419    T    C    299.53    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=34;Dels=0.0;FS=1.691;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.441;QD=8.81;ReadPosRankSum=0.356;SNPEFF_AMINO_ACID_CHANGE=S2540G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134623913_134623993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368586    GT:AD:DP:GQ:PL    0/1:21,13:34:99:330,0,723
10    134624546    rs41306838    G    A    85.33    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=17.07;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:1,4:5:12.66:115,0,13
10    134626247    rs111462409    C    T    292.43    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.277;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=1.631;QD=12.71;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:12,11:23:99:322,0,405
10    134626453    rs3750586    C    T    260.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.248;DB;DP=25;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.305;QD=10.43;ReadPosRankSum=0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:15,10:25:99:291,0,526
10    134627593    rs11146529    G    A    93.51    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.38;QD=7.79;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:5,7:12:99:124,0,162
10    134627882    rs7070307    G    T    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
10    134628623    rs2387070    T    C    168.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
10    134646988    rs4880433    C    T    1076.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.691;DB;DP=90;Dels=0.0;FS=2.051;HRun=0;HaplotypeScore=4.5176;MQ=59.74;MQ0=0;MQRankSum=1.012;QD=11.96;ReadPosRankSum=1.163;SNPEFF_AMINO_ACID_CHANGE=A2331T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134646862_134647029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368586    GT:AD:DP:GQ:PL    0/1:54,36:90:99:1107,0,1441
10    134647453    rs3750583    C    T    613.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476633    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:647,54,0
10    134647771    rs3793690    G    T    200.49    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=3.282;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=16.71;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476633    GT:AD:DP:GQ:PL    0/1:5,7:12:99:230,0,169
10    134647859    rs3793689    T    C    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.64;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476633    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
10    134648048    rs3793688    C    T    202.46    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=15.57;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476633    GT:AD:DP:GQ:PL    0/1:6,7:13:99:232,0,154
10    134648569    rs4880434    A    G    45.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
10    134649709    rs76581191    C    T    401.03    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DB;DP=20;Dels=0.0;FS=8.495;HRun=0;HaplotypeScore=1.9972;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=20.05;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=G2184S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134649646_134649722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368586    GT:AD:DP:GQ:PL    0/1:7,13:20:99:431,0,151
10    134650124    rs3750582    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
10    134650139    rs3833717    GC    G    113.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=41.7302;IndelType=D;MQ=61.78;MQ0=0;QD=18.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    1/1:0,6:6:17.99:155,18,0
10    134650313    rs73391230    G    A    671.90    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=1.937;DB;DP=55;Dels=0.0;FS=10.24;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.81;QD=12.22;ReadPosRankSum=0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:32,23:55:99:702,0,842
10    134650440    rs3750580    T    C    242.50    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=29;Dels=0.0;FS=5.528;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.296;QD=8.36;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:20,9:29:99:272,0,644
10    134659520    rs41309401    C    T    112.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=0.731;QD=22.48;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:1,4:5:18.39:142,0,18
10    134659573    rs34588833    G    A    71.86    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.9983;MQ=49.17;MQ0=0;MQRankSum=0.72;QD=10.27;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=A2142;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134659561_134659731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368586    GT:AD:DP:GQ:PL    0/1:2,5:7:48.98:102,0,49
10    134659626    rs10870341    A    G    74.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=1.3;QD=10.66;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=C2125R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134659561_134659731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368586    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,126
10    134660311    rs11146543    A    G    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:71,0,69
10    134660951    rs2892211    A    C    128.24    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.105;DB;DP=22;Dels=0.0;FS=4.393;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.375;QD=5.83;ReadPosRankSum=-0.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:14,8:22:99:158,0,505
10    134661020    rs73391257    G    A    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,72
10    134661086    rs63681260    A    C    81.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=27.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
10    134664875    rs7913626    A    G    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263170    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
10    134671094    rs73391289    G    C    696.65    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=4.942;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9645;MQ=58.81;MQ0=0;MQRankSum=1.062;QD=17.86;ReadPosRankSum=0.666;SNPEFF_AMINO_ACID_CHANGE=D1858E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134671094_134671292;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368586    GT:AD:DP:GQ:PL    0/1:17,22:39:99:727,0,488
10    134672798    rs2001324    G    T    138.13    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=14;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=9.87;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368586    GT:AD:DP:GQ:PL    0/1:9,5:14:99:168,0,238
10    134679465    rs73393224    C    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368586    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
10    134681093    rs4880454    C    T    265.74    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.561;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=7.38;ReadPosRankSum=0.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417862    GT:AD:DP:GQ:PL    0/1:26,10:36:99:296,0,701
10    134691730    rs113893547    G    A    104.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=13.03;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:2,4:8:63.02:134,0,63
10    134691740    rs10870349    A    G    205.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.62;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:239,18,0
10    134691914    rs4880458    T    C    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    134722022    rs7075277    A    G    1350.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.15;SNPEFF_AMINO_ACID_CHANGE=C958;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134721972_134722138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1383,108,0
10    134723390    rs10870353    A    G    156.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:189,15,0
10    134723394    rs11146582    A    G    156.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
10    134726369    rs56300950    T    A    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:2,2:4:57.53:69,0,58
10    134726470    rs12254171    T    C    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
10    134726621    rs4880467    G    C    61.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.72;ReadPosRankSum=-1.3;SNPEFF_AMINO_ACID_CHANGE=A754;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134726550_134726762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:3,4:7:91.03:91,0,95
10    134735453    rs59771432    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    134735531    rs114977405    G    A    126.20    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=18.03;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:2,5:7:51.79:156,0,52
10    134735672    rs7915371    A    G    621.17    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.778;DB;DP=34;Dels=0.0;FS=3.419;HRun=0;HaplotypeScore=1.8561;MQ=59.32;MQ0=0;MQRankSum=1.077;QD=18.27;ReadPosRankSum=-0.85;SNPEFF_AMINO_ACID_CHANGE=N514;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134735608_134735728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:10,24:34:99:651,0,287
10    134748281    rs74460040    G    A    538.66    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=34;Dels=0.0;FS=15.237;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=15.84;ReadPosRankSum=-1.57;SNPEFF_AMINO_ACID_CHANGE=R281C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134748256_134748366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:16,18:34:99:569,0,462
10    134750604    rs10870211    C    A    67.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475340    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
10    134752007    rs111746212    TC    T    95.99    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.986;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=67.9228;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.141;QD=4.57;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:14,7:21:99:135,0,358
10    134752287    rs12247654    A    G    340.50    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=10.32;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:20,13:33:99:370,0,579
10    134755298    rs4880292    C    G    267.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=19.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,14:14:24.07:300,24,0
10    134755829    rs57782196    A    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
10    134755850    rs141093874    G    T    34.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368582    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:65,0,32
10    134886613    .    TG    T    139.11    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DP=15;FS=2.158;HRun=3;HaplotypeScore=45.3447;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=-0.53;QD=9.27;ReadPosRankSum=-0.884;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_10_134886331_134886701;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR123;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000368577    GT:AD:DP:GQ:PL    0/1:9,6:15:99:178,0,331
10    134896313    rs41283455    C    T    129.06    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=17;Dels=0.0;FS=5.842;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=7.59;ReadPosRankSum=-0.158;SNPEFF_AMINO_ACID_CHANGE=A442V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134896251_134896362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR123;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368577    GT:AD:DP:GQ:PL    0/1:12,5:17:99:159,0,301
10    134898594    rs4838694    A    G    2038.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368577    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2072,153,0
10    134912314    rs11101916    G    A    1294.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368577    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1328,99,0
10    134915832    rs9419103    C    T    173.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.093;QD=13.34;ReadPosRankSum=-2.074;SNPEFF_AMINO_ACID_CHANGE=T802I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134915780_134915842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR123;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392609    GT:AD:DP:GQ:PL    0/1:6,7:13:99:203,0,173
10    134915993    rs7905581    G    C    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368577    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    134916121    rs7918862    T    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368577    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
10    134981123    rs41307080    G    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304613    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
10    134997305    .    G    A    773.38    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.551;DP=50;Dels=0.0;FS=1.172;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.038;QD=15.47;ReadPosRankSum=-1.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485110    GT:AD:DP:GQ:PL    0/1:22,27:50:99:803,0,636
10    134997480    rs57510763    C    T    1147.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.84;MQ0=0;QD=35.85;SNPEFF_AMINO_ACID_CHANGE=F139;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134997376_134997493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1180,90,0
10    134997514    rs67800134    A    G    435.98    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.9856;MQ=52.81;MQ0=0;QD=22.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485110    GT:AD:DP:GQ:PL    1/1:0,19:19:39.07:469,39,0
10    134997524    .    T    TCTTG    1074.12    PASS    AC=2;AF=1.00;AN=2;DP=15;FS=0.0;HRun=0;HaplotypeScore=133.6975;IndelType=I;MQ=50.72;MQ0=0;QD=71.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485110    GT:AD:DP:GQ:PL    1/1:1,13:15:42.14:1116,42,0
10    134999602    rs3008393    G    C    39.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.82;SNPEFF_AMINO_ACID_CHANGE=T185;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134999478_135000178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:71,6,0
10    135000148    rs3810965    T    C    928.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.04;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.33;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=A367;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134999478_135000178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,27:27:75.21:962,75,0
10    135000159    rs3810964    A    G    718.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=E371G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_134999478_135000178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:752,60,0
10    135000343    rs12385763    G    A    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304613    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
10    135012162    rs2998139    T    C    102.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.71;SNPEFF_AMINO_ACID_CHANGE=L652P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135012082_135012770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:135,12,0
10    135012429    rs3008390    T    A    108.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.08;SNPEFF_AMINO_ACID_CHANGE=V741D;SNPEFF_CODON_CHANGE=gTt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135012082_135012770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:141,12,0
10    135012430    rs3008389    T    C    143.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.64;SNPEFF_AMINO_ACID_CHANGE=V741;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135012082_135012770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
10    135012652    rs3008388    T    C    126.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=15.79;SNPEFF_AMINO_ACID_CHANGE=D815;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135012082_135012770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:159,12,0
10    135013208    rs2998138    C    G    163.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304613    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
10    135013371    rs9419022    C    T    42.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304613    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
10    135020315    rs3008375    T    C    3113.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497778    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3147,259,0
10    135024388    rs2998127    A    G    142.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.2;MQ0=0;QD=28.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368571    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:175,15,0
10    135032376    rs3008370    A    G    2270.68    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=146;Dels=0.0;FS=1.707;HRun=0;HaplotypeScore=0.9997;MQ=59.53;MQ0=0;MQRankSum=-0.58;QD=15.55;ReadPosRankSum=2.042;SNPEFF_AMINO_ACID_CHANGE=K1573;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135032335_135032457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304613    GT:AD:DP:GQ:PL    0/1:69,77:146:99:2301,0,2194
10    135038088    rs11597218    C    T    61.38    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.67;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KNDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304613    GT:AD:DP:GQ:PL    0/1:5,3:8:91.37:91,0,181
10    135051562    rs2998143    A    G    174.70    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=2.632;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=15.88;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=P48;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135051175_135051659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VENTX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325980    GT:AD:DP:GQ:PL    0/1:3,8:11:92.04:205,0,92
10    135053123    rs880340    A    G    421.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VENTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325980    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:454,39,0
10    135053353    .    G    A    200.57    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=11.8;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VENTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325980    GT:AD:DP:GQ:PL    0/1:10,7:17:99:231,0,318
10    135076523    rs2995300    C    A    1783.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=33.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415217    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1816,138,0
10    135076596    rs2230576    T    C    1714.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.111;MQ=59.09;MQ0=0;QD=30.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415217    GT:AD:DP:GQ:PL    1/1:0,55:56:99:1748,144,0
10    135076758    rs3008318    T    C    247.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415217    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
10    135077311    rs2995301    C    G    124.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415217    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
10    135082346    rs2275720    A    G    1017.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,36:36:78.25:1050,78,0
10    135082874    rs2995311    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
10    135083164    rs2275719    C    T    127.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
10    135083669    rs2995312    C    T    117.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
10    135083713    rs2995313    C    T    104.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:137,12,0
10    135083812    rs885023    C    A    210.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
10    135084232    rs5789159    C    CAGA    710.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=37.3585;IndelType=I;MQ=54.46;MQ0=0;QD=64.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:1,10:11:33.11:753,33,0
10    135084322    rs3008321    A    G    394.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:428,33,0
10    135084601    rs2995314    T    C    497.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,18:18:45.11:530,45,0
10    135085321    rs1131720    C    T    562.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:596,45,0
10    135085426    rs1131719    A    G    1040.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.094;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.415;QD=29.72;ReadPosRankSum=-0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:3,31:35:50.96:1073,51,0
10    135086203    rs3008323    C    T    275.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463298    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:308,27,0
10    135086244    rs3841003    A    AC    245.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=8;HaplotypeScore=63.7021;IndelType=I;MQ=60.68;MQ0=0;QD=17.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486609    GT:AD:DP:GQ:PL    1/1:4,10:14:26.91:288,27,0
10    135086380    rs3008324    C    T    708.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486609    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:741,57,0
10    135086676    rs3008325    A    G    205.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=25.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486609    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:239,18,0
10    135087521    rs3008326    G    A    95.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415217    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:128,9,0
10    135087824    .    G    A    120.78    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=9.29;ReadPosRankSum=-0.633;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=ADAM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415217    GT:AD:DP:GQ:PL    0/1:4,9:13:99:151,0,104
10    135095408    rs2995324    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    135096784    rs2995325    A    G    550.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:583,45,0
10    135097224    rs56403249    T    G    82.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.26;MQ0=0;QD=16.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:0,5:5:12:115,12,0
10    135097227    rs67681147    CG    C    160.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=68.6947;IndelType=D;MQ=31.26;MQ0=0;QD=32.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
10    135097434    rs2995326    A    G    719.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.17;MQ0=0;QD=28.78;SNPEFF_AMINO_ACID_CHANGE=F292;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135097386_135097506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368562    GT:AD:DP:GQ:PL    1/1:0,25:25:60.16:753,60,0
10    135098672    rs3008334    G    A    911.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=29.4;SNPEFF_AMINO_ACID_CHANGE=Y240;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135098589_135098717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368562    GT:AD:DP:GQ:PL    1/1:0,31:31:69.22:944,69,0
10    135098830    rs3008335    T    C    170.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:204,18,0
10    135098845    rs2995327    C    T    249.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
10    135103311    rs138031130    C    CGCTGCGCCGCGGACGCCAAGTCCCT    1663.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.47;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=231.0856;IndelType=I;MQ=46.87;MQ0=0;MQRankSum=-1.203;QD=118.8;ReadPosRankSum=-1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:2,3:14:21.63:1705,22,0
10    135105778    rs113365344    G    A    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
10    135105863    rs141847376    G    A    66.63    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.33;MQ0=0;MQRankSum=0.0;QD=9.52;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    0/1:3,4:7:18.56:97,0,19
10    135105979    .    T    TC    184.37    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=4;HaplotypeScore=71.7606;IndelType=I;MQ=37.46;MQ0=0;QD=16.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:6,5:8:21.71:226,22,0
10    135105991    rs72864793    G    A    243.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7456;MQ=36.29;MQ0=0;QD=18.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252936    GT:AD:DP:GQ:PL    1/1:0,13:13:24.07:276,24,0
10    135141572    rs2298122    G    T    150.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252939    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:183,15,0
10    135160950    rs4838721    C    T    508.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415747    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:541,42,0
10    135165326    rs4838727    G    A    88.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278025    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    135165790    rs4369319    A    G    1805.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_AMINO_ACID_CHANGE=H101R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135165751_135166187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433452    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1838,144,0
10    135176091    rs4604    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C10orf125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278025    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
10    135178087    rs10745294    A    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368547    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
10    135179458    rs6537598    G    C    2373.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=1.258;QD=32.08;ReadPosRankSum=0.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368547    GT:AD:DP:GQ:PL    1/1:1,73:74:99:2407,175,0
10    135179777    rs6537599    C    T    128.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368547    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
10    135180430    rs2230261    A    G    1350.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_AMINO_ACID_CHANGE=T194;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135180393_135180497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368547    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1383,108,0
10    135183802    rs7100433    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368547    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
10    135184126    rs1049951    G    A    715.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=T75I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135184064_135184261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368547    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:748,57,0
10    135184421    rs7894051    C    G    119.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000368547    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
10    135193249    rs4617507    G    A    34.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278060    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
10    135194890    rs10745295    A    G    200.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528127    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:233,21,0
10    135195332    rs2185746    A    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528127    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
10    135197419    rs4240520    G    A    6839.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=194;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=59.43;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528127    GT:AD:DP:GQ:PL    1/1:0,193:194:99:6840,509,0
10    135202333    rs10745296    G    A    3868.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.06;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278060    GT:AD:DP:GQ:PL    1/1:0,105:106:99:3869,298,0
10    135202594    rs10776679    T    C    1898.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9728;MQ=58.23;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278060    GT:AD:DP:GQ:PL    1/1:0,69:69:99:1931,177,0
10    135204799    rs6537600    C    T    1827.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=30.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468317    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1860,144,0
10    135204950    rs1046175    C    G    1217.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_AMINO_ACID_CHANGE=Q457E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135204816_135205158;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357296    GT:AD:DP:GQ:PL    1/1:0,35:35:96.29:1251,96,0
10    135205009    rs1046178    C    G    529.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=P476;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135204816_135205158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357296    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:563,42,0
10    135207936    rs10160083    T    C    40.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278060    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
10    135209105    rs4838742    A    G    156.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278060    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:190,15,0
10    135211892    rs2252852    A    G    274.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL360181.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317502    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:307,27,0
10    135212997    rs55658692    C    G    447.10    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=26;Dels=0.0;FS=5.545;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=17.2;ReadPosRankSum=-0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL360181.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317502    GT:AD:DP:GQ:PL    0/1:11,15:26:99:477,0,288
10    135213263    rs2814206    T    C    227.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=22.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL360181.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317502    GT:AD:DP:GQ:PL    1/1:0,10:10:21.04:260,21,0
10    135215762    rs58858117    T    C    319.54    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.95;DB;DP=39;Dels=0.0;FS=1.902;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-1.347;QD=8.19;ReadPosRankSum=0.862;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL360181.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495014    GT:AD:DP:GQ:PL    0/1:25,14:39:99:350,0,783
10    135233541    rs2255246    A    G    1854.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5219;MQ=59.64;MQ0=0;MQRankSum=-1.335;QD=28.98;ReadPosRankSum=-1.619;SNPEFF_AMINO_ACID_CHANGE=I242V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135233530_135233723;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL360181.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432508    GT:AD:DP:GQ:PL    1/1:1,63:64:99:1888,156,0
10    135237060    rs2480253    A    G    144.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=28.88;SNPEFF_AMINO_ACID_CHANGE=G42;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135234170_135237201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414069    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
10    135237166    rs2492666    G    A    55.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=1.231;QD=11.04;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=T7M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135234170_135237201;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414069    GT:AD:DP:GQ:PL    1/1:2,3:5:6.02:86,6,0
10    135237196    rs4838682    C    T    55.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=13.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_10_135234170_135237201;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414069    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:87,6,0
10    135271598    rs943980    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-108K14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333815    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
10    135271789    rs2480245    C    T    587.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_AMINO_ACID_CHANGE=P3L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135270589_135272160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-108K14.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356567    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:620,45,0
10    135273463    rs731947    C    G    212.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.51;SNPEFF_AMINO_ACID_CHANGE=D386E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135272991_135273517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-108K14.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356567    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:245,18,0
10    135279283    rs2243812    T    C    1098.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-108K14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333815    GT:AD:DP:GQ:PL    1/1:0,29:30:84.28:1132,84,0
10    135279810    rs2243909    T    G    606.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.58;SNPEFF_AMINO_ACID_CHANGE=S911A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135279739_135279885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-108K14.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333815    GT:AD:DP:GQ:PL    1/1:0,22:22:48.15:640,48,0
10    135280765    rs2246634    C    T    46.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.65;SNPEFF_AMINO_ACID_CHANGE=P957L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135280702_135280857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-108K14.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333815    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
10    135340866    rs55985747    T    TC    2765.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=1;HaplotypeScore=158.9903;IndelType=I;MQ=60.53;MQ0=0;QD=41.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-108K14.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356567    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2808,190,0
10    135342260    rs943975    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541261    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
10    135347397    rs915909    T    C    2055.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.65;MQ0=0;QD=29.79;SNPEFF_AMINO_ACID_CHANGE=I184;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135347260_135347401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418356    GT:AD:DP:GQ:PL    1/1:0,68:69:99:2089,174,0
10    135347533    rs943976    A    G    202.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=25.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477500    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:235,18,0
10    135350871    rs8192777    G    T    283.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477500    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
10    135351137    rs2070676    G    C    586    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=36.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477500    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:619,45,0
10    135351174    rs2070677    T    A    796.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477500    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:830,60,0
10    135351362    rs2515641    T    C    1692.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=F284;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135351255_135351396;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418356    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1726,129,0
10    135352153    rs2249694    A    G    198.07    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=16.51;ReadPosRankSum=1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252945    GT:AD:DP:GQ:PL    0/1:5,7:12:99:228,0,169
10    135352168    rs2249695    T    C    270.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=18.05;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252945    GT:AD:DP:GQ:PL    0/1:6,9:15:99:301,0,194
10    135352509    rs2480257    T    A    228.09    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.87;MQ0=0;MQRankSum=-0.56;QD=10.37;ReadPosRankSum=-1.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418356    GT:AD:DP:GQ:PL    0/1:12,10:22:99:258,0,367
10    135352514    rs2480256    A    G    234.17    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.567;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=57.77;MQ0=0;MQRankSum=0.038;QD=11.15;ReadPosRankSum=-1.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418356    GT:AD:DP:GQ:PL    0/1:11,10:21:99:264,0,326
10    135367655    rs11101821    A    G    67.02    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=57.05;MQ0=0;MQRankSum=0.956;QD=8.38;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343131    GT:AD:DP:GQ:PL    0/1:5,3:8:97.01:97,0,174
10    135368163    rs2149616    A    G    305.02    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=29;Dels=0.0;FS=5.792;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.686;QD=10.52;ReadPosRankSum=0.111;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2E1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000368520    GT:AD:DP:GQ:PL    0/1:17,12:29:99:335,0,510
10    135368325    rs2149617    A    C    246.19    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.354;QD=22.38;ReadPosRankSum=-2.003;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343131    GT:AD:DP:GQ:PL    0/1:2,9:11:39.79:276,0,40
10    135368452    rs3737029    A    G    77.85    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=16;Dels=0.0;FS=2.363;HRun=4;HaplotypeScore=0.0;MQ=52.32;MQ0=0;MQRankSum=-2.657;QD=4.87;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460441    GT:AD:DP:GQ:PL    0/1:10,6:16:99:108,0,264
10    135368462    rs2183163    T    C    135.05    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=17;Dels=0.0;FS=2.246;HRun=2;HaplotypeScore=0.0;MQ=51.25;MQ0=0;MQRankSum=-2.858;QD=7.94;ReadPosRankSum=-0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460441    GT:AD:DP:GQ:PL    0/1:10,7:17:99:165,0,282
10    135368489    rs71228758    A    AGCTGAGACGG    835.37    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=15;FS=2.276;HRun=0;HaplotypeScore=143.395;IndelType=I;MQ=49.44;MQ0=0;MQRankSum=-2.202;QD=55.69;ReadPosRankSum=-0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460441    GT:AD:DP:GQ:PL    0/1:8,5:15:99:874,0,643
10    135368590    rs3737031    T    C    110.23    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-1.977;QD=8.48;ReadPosRankSum=0.689;SNPEFF_AMINO_ACID_CHANGE=H321R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135368348_135368633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343131    GT:AD:DP:GQ:PL    0/1:7,6:13:99:140,0,239
10    135368835    rs3737034    C    T    491.31    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.52;DB;DP=32;Dels=0.0;FS=4.228;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=15.35;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460441    GT:AD:DP:GQ:PL    0/1:14,17:32:99:521,0,396
10    135368967    rs11592461    G    A    566    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=30;Dels=0.0;FS=1.764;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.045;QD=18.87;ReadPosRankSum=-0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460441    GT:AD:DP:GQ:PL    0/1:9,21:30:99:596,0,281
10    135369054    rs3020514    A    G    564.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460441    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:597,45,0
10    135369258    rs3827688    C    T    501.99    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.49;DB;DP=38;Dels=0.0;FS=1.32;HRun=0;HaplotypeScore=1.7803;MQ=58.9;MQ0=0;MQRankSum=1.503;QD=13.21;ReadPosRankSum=-0.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460441    GT:AD:DP:GQ:PL    0/1:18,20:38:99:532,0,554
10    135369532    rs3747881    T    C    702.13    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.391;DB;DP=71;Dels=0.0;FS=2.221;HRun=2;HaplotypeScore=1.7338;MQ=58.36;MQ0=0;MQRankSum=0.438;QD=9.89;ReadPosRankSum=-0.186;SNPEFF_AMINO_ACID_CHANGE=K147R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135369485_135369551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000368517    GT:AD:DP:GQ:PL    0/1:36,35:71:99:732,0,1026
10    135369643    rs3747880    T    C    131.33    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.21;ReadPosRankSum=0.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460441    GT:AD:DP:GQ:PL    0/1:11,5:16:99:161,0,289
10    135370343    rs8181464    G    A    237.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=14.85;ReadPosRankSum=2.468;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:8,8:16:99:268,0,234
10    135370370    rs8181332    C    T    355.73    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.334;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=16.17;ReadPosRankSum=-0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:9,13:22:99:386,0,273
10    135370407    rs34785825    G    GCA    938.90    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=4.696;DB;DP=39;FS=3.08;HRun=0;HaplotypeScore=221.6446;IndelType=I;MQ=60.52;MQ0=0;MQRankSum=0.048;QD=24.07;ReadPosRankSum=-0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:19,18:39:99:978,0,598
10    135370470    rs8181425    T    C    1913.36    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=3.849;DB;DP=96;Dels=0.0;FS=11.075;HRun=1;HaplotypeScore=0.5784;MQ=59.97;MQ0=0;MQRankSum=-0.149;QD=19.93;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:39,57:96:99:1943,0,1293
10    135370633    rs8181356    C    T    2073.68    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=4.399;DB;DP=176;DS;Dels=0.0;FS=2.478;HRun=2;HaplotypeScore=0.9578;MQ=59.34;MQ0=0;MQRankSum=0.454;QD=11.78;ReadPosRankSum=-0.819;SNPEFF_AMINO_ACID_CHANGE=K134;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135370571_135370660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303903    GT:AD:DP:GQ:PL    0/1:91,85:176:99:2104,0,2939
10    135370639    rs8181357    C    A    2318.89    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.963;DB;DP=168;DS;Dels=0.0;FS=3.995;HRun=1;HaplotypeScore=1.6229;MQ=59.17;MQ0=0;MQRankSum=1.859;QD=13.8;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=E132D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135370571_135370660;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303903    GT:AD:DP:GQ:PL    0/1:89,79:168:99:2349,0,2858
10    135370760    rs8181359    C    T    299.19    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.343;QD=11.51;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:16,10:26:99:329,0,533
10    135371262    rs8181294    G    C    112.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=14.09;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,129
10    135371466    rs2987792    T    C    324.48    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.518;QD=12.02;ReadPosRankSum=-0.419;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:16,11:27:99:354,0,511
10    135371467    rs8181456    T    C    357.87    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.578;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.025;QD=13.25;ReadPosRankSum=0.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:11,16:27:99:388,0,378
10    135371566    rs8181309    G    A    107.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.46;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,136
10    135371606    rs8181458    T    C    214.53    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=19.5;ReadPosRankSum=-1.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:4,7:11:99:245,0,119
10    135371835    rs35408926    A    AC    159.59    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;FS=3.424;HRun=3;HaplotypeScore=44.2918;IndelType=I;MQ=60.79;MQ0=0;MQRankSum=1.186;QD=13.3;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:6,6:12:99:199,0,145
10    135371920    rs67106646    G    A    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.65;MQ0=0;MQRankSum=0.0;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,72
10    135371940    rs74162040    T    C    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.63;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:69,0,70
10    135371942    rs74162041    G    A    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,71
10    135372310    rs10857748    T    C    33.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.16;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:63,0,30
10    135372597    rs10857749    C    T    73.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.45;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,147
10    135372870    rs11101825    C    G    491.48    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.535;DB;DP=45;Dels=0.0;FS=7.04;HRun=2;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.9;QD=10.92;ReadPosRankSum=-1.279;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:26,19:45:99:521,0,665
10    135373010    rs10857751    G    A    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482127    GT:AD:DP:GQ:PL    0/1:2,2:4:62.53:70,0,63
10    135373591    rs3813873    C    T    366.90    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.293;DB;DP=36;Dels=0.0;FS=1.666;HRun=0;HaplotypeScore=0.9332;MQ=59.36;MQ0=0;MQRankSum=-0.328;QD=10.19;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541506    GT:AD:DP:GQ:PL    0/1:19,17:36:99:397,0,597
10    135373694    rs10857752    G    A    257.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.821;DB;DP=26;Dels=0.0;FS=2.269;HRun=1;HaplotypeScore=1.7046;MQ=59.11;MQ0=0;MQRankSum=1.026;QD=9.91;ReadPosRankSum=0.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541506    GT:AD:DP:GQ:PL    0/1:13,13:26:99:288,0,435
10    135373768    rs10857753    T    C    168.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=14.01;ReadPosRankSum=1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541506    GT:AD:DP:GQ:PL    0/1:6,6:12:99:198,0,211
10    135438810    .    G    A    289.98    MQFilter40    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=2.315;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.801;MQ=20.92;MQ0=25;MQRankSum=-1.362;QD=3.72;ReadPosRankSum=-0.333;SNPEFF_AMINO_ACID_CHANGE=L210;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135438603_135439108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:55,23:78:99:320,0,676
10    135438834    .    A    C    299.68    MQFilter40    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.956;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.63;MQ=26.27;MQ0=22;MQRankSum=-2.518;QD=3.7;ReadPosRankSum=0.798;SNPEFF_AMINO_ACID_CHANGE=L202;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135438603_135439108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:55,26:81:99:330,0,858
10    135438888    rs150376644    C    T    554.90    MQFilter40    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DB;DP=103;Dels=0.0;FS=17.99;HRun=1;HaplotypeScore=1.9692;MQ=34.52;MQ0=11;MQRankSum=-2.835;QD=5.39;ReadPosRankSum=-0.406;SNPEFF_AMINO_ACID_CHANGE=E184;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135438603_135439108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:66,37:103:99:585,0,1639
10    135438929    .    T    G    993.30    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.886;DP=145;Dels=0.0;FS=0.728;HRun=0;HaplotypeScore=2.7031;MQ=42.01;MQ0=4;MQRankSum=-5.846;QD=6.85;ReadPosRankSum=-0.558;SNPEFF_AMINO_ACID_CHANGE=I171L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135438603_135439108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:85,60:145:99:1023,0,2478
10    135438951    .    G    A    1078.94    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=3.118;DP=156;Dels=0.0;FS=1.499;HRun=0;HaplotypeScore=5.3339;MQ=43.02;MQ0=4;MQRankSum=-4.538;QD=6.92;ReadPosRankSum=-0.654;SNPEFF_AMINO_ACID_CHANGE=A163;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135438603_135439108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:91,65:156:99:1109,0,2575
10    135438955    .    C    T    1071.45    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=5.782;DP=155;Dels=0.0;FS=2.49;HRun=0;HaplotypeScore=3.3647;MQ=43.23;MQ0=4;MQRankSum=-5.04;QD=6.91;ReadPosRankSum=0.323;SNPEFF_AMINO_ACID_CHANGE=R162Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135438603_135439108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:92,63:155:99:1101,0,2393
10    135438967    rs145018822    C    T    994.66    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=6.445;DB;DP=150;Dels=0.0;FS=1.689;HRun=0;HaplotypeScore=3.5318;MQ=43.56;MQ0=7;MQRankSum=-5.653;QD=6.63;ReadPosRankSum=1.813;SNPEFF_AMINO_ACID_CHANGE=R158Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135438603_135439108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:89,61:150:99:1025,0,2372
10    135438977    rs79631365    G    A    939.27    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=143;Dels=0.0;FS=5.436;HRun=0;HaplotypeScore=0.0;MQ=44.37;MQ0=7;MQRankSum=-5.918;QD=6.57;ReadPosRankSum=2.598;SNPEFF_AMINO_ACID_CHANGE=R155C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135438603_135439108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:84,58:143:99:969,0,2323
10    135439196    rs141975116    C    T    60.06    MQFilter40;QDFilter2    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=1.546;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9733;MQ=20.82;MQ0=8;MQRankSum=0.496;QD=1.72;ReadPosRankSum=1.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:26,9:35:90.05:90,0,384
10    135439220    rs138977113    C    T    63.78    MQFilter40;QDFilter2    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.26;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9532;MQ=21.7;MQ0=7;MQRankSum=-0.638;QD=1.68;ReadPosRankSum=1.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:29,9:38:93.78:94,0,514
10    135440203    .    A    T    499.04    MQFilter40    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=0.734;DP=194;Dels=0.0;FS=5.37;HRun=1;HaplotypeScore=0.7887;MQ=21.93;MQ0=13;MQRankSum=3.269;QD=2.57;ReadPosRankSum=-1.295;SNPEFF_AMINO_ACID_CHANGE=I15N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135440069_135440299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:156,38:194:99:529,0,2063
10    135440214    rs144521881    G    C    69.87    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=1.193;DB;DP=197;Dels=0.0;FS=1.676;HRun=0;HaplotypeScore=62.147;MQ=23.23;MQ0=10;MQRankSum=-2.752;QD=0.35;ReadPosRankSum=1.38;SNPEFF_AMINO_ACID_CHANGE=H11Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135440069_135440299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:163,34:197:99:100,0,2736
10    135440216    rs151005651    G    A    75.85    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.789;DB;DP=193;Dels=0.0;FS=1.607;HRun=0;HaplotypeScore=62.1905;MQ=23.31;MQ0=10;MQRankSum=-2.695;QD=0.39;ReadPosRankSum=0.763;SNPEFF_AMINO_ACID_CHANGE=H11Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_10_135440069_135440299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:158,35:193:99:106,0,2708
10    135440270    .    G    A    270.87    HaplotypeScoreFilter13;MQFilter40    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.905;DP=128;Dels=0.0;FS=3.807;HRun=0;HaplotypeScore=17.9719;MQ=21.68;MQ0=13;MQRankSum=-3.116;QD=2.12;ReadPosRankSum=0.541;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495459    GT:AD:DP:GQ:PL    0/1:87,41:128:99:301,0,1402
10    135440278    .    T    A    409.86    HaplotypeScoreFilter13;MQFilter40    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.926;DP=118;Dels=0.0;FS=13.59;HRun=0;HaplotypeScore=14.6144;MQ=21.37;MQ0=13;MQRankSum=-4.887;QD=3.47;ReadPosRankSum=-0.215;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495459    GT:AD:DP:GQ:PL    0/1:61,57:118:99:440,0,1062
10    135440305    rs146791670    G    T    59.05    MQFilter40;QDFilter2    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.503;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.5232;MQ=16.7;MQ0=13;MQRankSum=-4.458;QD=0.69;ReadPosRankSum=-1.797;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425520    GT:AD:DP:GQ:PL    0/1:40,45:85:89.05:89,0,453
10    135473004    .    T    C    236.86    MQFilter40    AC=2;AF=1.00;AN=2;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.93;MQ0=1;QD=26.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL845259.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408181    GT:AD:DP:GQ:PL    1/1:1,8:9:24.03:270,24,0
10    135490810    .    C    A    33.81    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.975;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DP=161;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=17.4678;MQ=5.98;MQ0=149;MQRankSum=2.262;QD=0.21;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:156,4:161:63.80:64,0,92
10    135490831    .    G    A    134.87    MQFilter40;QDFilter2    AB=0.921;AC=1;AF=0.50;AN=2;BaseQRankSum=3.079;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.5868;MQ=7.02;MQ0=148;MQRankSum=-0.543;QD=0.81;ReadPosRankSum=-0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:151,13:167:99:165,0,112
10    135490838    .    G    A    237.95    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.924;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=23.317;MQ=7.96;MQ0=146;MQRankSum=0.713;QD=1.4;ReadPosRankSum=-0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:157,13:170:79.11:268,0,79
10    135490847    .    C    A    480.76    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.805;DP=171;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=16.4508;MQ=8.35;MQ0=143;MQRankSum=2.268;QD=2.81;ReadPosRankSum=-1.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:144,27:171:59.81:514,60,0
10    135490855    .    C    A    382.38    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.225;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.7669;MQ=8.55;MQ0=146;MQRankSum=1.624;QD=2.14;ReadPosRankSum=-0.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:149,30:179:23.37:415,23,0
10    135490884    .    C    T    49.47    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.948;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=194;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=42.3754;MQ=10.75;MQ0=143;MQRankSum=-1.079;QD=0.25;ReadPosRankSum=1.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:182,10:194:79.46:79,0,564
10    135490890    .    C    A    31.94    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.939;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DP=200;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=66.5612;MQ=10.66;MQ0=148;MQRankSum=-2.707;QD=0.16;ReadPosRankSum=0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:184,12:200:61.93:62,0,513
10    135490903    rs142064582    C    T    351.28    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.881;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.518;DB;DP=212;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=47.0597;MQ=11.2;MQ0=151;MQRankSum=2.453;QD=1.66;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:177,24:212:99:381,0,378
10    135490921    .    C    T    78.72    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.926;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.628;DP=219;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=63.4997;MQ=11.5;MQ0=152;MQRankSum=-0.64;QD=0.36;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:201,16:219:99:109,0,750
10    135490931    rs148242636    G    T    92.64    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.954;AC=1;AF=0.50;AN=2;BaseQRankSum=1.05;DB;DP=216;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=103.221;MQ=11.67;MQ0=144;MQRankSum=4.289;QD=0.43;ReadPosRankSum=0.934;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:206,10:216:99:123,0,779
10    135490936    .    G    A    159.18    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.92;AC=1;AF=0.50;AN=2;BaseQRankSum=5.728;DP=214;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=89.5308;MQ=11.62;MQ0=142;MQRankSum=0.583;QD=0.74;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:196,17:214:99:189,0,744
10    135490937    rs138092539    C    T    101.48    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.948;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.501;DB;DP=211;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=88.5574;MQ=11.64;MQ0=140;MQRankSum=3.018;QD=0.48;ReadPosRankSum=1.291;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:199,11:211:99:131,0,750
10    135490938    .    C    G    56.35    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.957;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.117;DP=212;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=80.7685;MQ=11.61;MQ0=141;MQRankSum=3.208;QD=0.27;ReadPosRankSum=1.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:199,9:212:86.34:86,0,768
10    135490939    .    G    A    202.72    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.902;AC=1;AF=0.50;AN=2;BaseQRankSum=5.152;DP=216;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=78.8217;MQ=11.45;MQ0=144;MQRankSum=-1.025;QD=0.94;ReadPosRankSum=-0.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:193,21:216:99:233,0,619
10    135490942    rs138826890    C    A    1136.27    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.097;DB;DP=211;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=77.2623;MQ=11.4;MQ0=141;MQRankSum=5.229;QD=5.39;ReadPosRankSum=0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:152,59:211:99:1169,140,0
10    135490947    rs142925856    G    A    1137.28    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=3.09;DB;DP=210;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=56.7117;MQ=11.25;MQ0=141;MQRankSum=5.221;QD=5.42;ReadPosRankSum=-0.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:151,59:210:99:1170,140,0
10    135490992    .    C    G    82.97    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.902;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DP=235;Dels=0.0;FS=5.586;HRun=0;HaplotypeScore=27.2256;MQ=15.0;MQ0=96;MQRankSum=-0.291;QD=0.35;ReadPosRankSum=-1.886;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:212,23:235:99:113,0,1957
10    135491006    .    G    A    242.74    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=1.171;DP=215;Dels=0.0;FS=5.915;HRun=2;HaplotypeScore=68.5579;MQ=15.91;MQ0=71;MQRankSum=1.192;QD=1.13;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:189,26:215:99:273,0,1889
10    135491013    .    C    CT    248.35    QDFilter2    AB=0.932;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.387;DP=114;FS=0.0;HRun=0;HaplotypeScore=2170.97;IndelType=I;MQ=16.21;MQ0=62;MQRankSum=3.496;QD=1.21;ReadPosRankSum=2.407;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:191,15:114:99:287,0,3753
10    135491016    .    G    A    54.20    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.921;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.649;DP=202;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=86.3958;MQ=16.37;MQ0=58;MQRankSum=3.532;QD=0.27;ReadPosRankSum=2.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:186,16:202:84.20:84,0,2066
10    135491021    .    C    T    76.30    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DP=198;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=119.7917;MQ=16.62;MQ0=52;MQRankSum=3.551;QD=0.39;ReadPosRankSum=1.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:180,18:198:99:106,0,1969
10    135491028    .    G    A    155.11    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=0.547;DP=193;Dels=0.0;FS=5.229;HRun=1;HaplotypeScore=78.8847;MQ=16.87;MQ0=48;MQRankSum=-0.937;QD=0.8;ReadPosRankSum=0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:148,28:193:99:185,0,1635
10    135491030    rs141014245    G    C    1420.38    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.315;DB;DP=191;Dels=0.0;FS=1.785;HRun=0;HaplotypeScore=84.5614;MQ=17.02;MQ0=45;MQRankSum=1.099;QD=7.44;ReadPosRankSum=2.252;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:102,89:191:99:1450,0,725
10    135491055    .    C    T    153.69    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.874;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DP=177;Dels=0.0;FS=2.572;HRun=0;HaplotypeScore=82.0152;MQ=18.38;MQ0=15;MQRankSum=2.423;QD=0.87;ReadPosRankSum=0.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:152,22:177:99:184,0,2035
10    135491056    .    G    A    272.15    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.834;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DP=176;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=81.0168;MQ=18.4;MQ0=14;MQRankSum=2.743;QD=1.55;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:146,29:176:99:302,0,1967
10    135491067    .    C    T    187.63    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=3.355;DP=163;Dels=0.0;FS=2.686;HRun=0;HaplotypeScore=88.8004;MQ=18.76;MQ0=5;MQRankSum=2.834;QD=1.15;ReadPosRankSum=-2.595;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:140,22:163:99:218,0,1923
10    135491077    .    G    A    91.05    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DP=111;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=78.7138;MQ=15.87;MQ0=9;MQRankSum=1.523;QD=0.82;ReadPosRankSum=3.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:89,22:111:99:121,0,937
10    135491083    .    G    T    662.25    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=84.3617;MQ=15.01;MQ0=9;MQRankSum=5.002;QD=7.53;ReadPosRankSum=-1.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:25,49:88:73.78:695,74,0
10    135491112    .    C    A    32.92    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.899;AC=1;AF=0.50;AN=2;BaseQRankSum=3.829;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.9891;MQ=14.22;MQ0=15;MQRankSum=1.187;QD=0.4;ReadPosRankSum=3.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:71,8:83:62.91:63,0,548
10    135491121    .    C    T    233.88    HaplotypeScoreFilter13;MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.469;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=73.3449;MQ=14.4;MQ0=15;MQRankSum=1.325;QD=2.92;ReadPosRankSum=-2.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:60,20:80:99:264,0,360
10    135491126    .    C    T    95.14    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=2.938;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=35.8227;MQ=14.26;MQ0=17;MQRankSum=-0.083;QD=1.22;ReadPosRankSum=2.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    0/1:61,14:78:99:125,0,472
10    135491204    rs141995823    C    G    65.94    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.572;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.867;MQ=9.57;MQ0=23;MQRankSum=1.589;QD=2.13;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:23,7:30:11.95:98,12,0
10    135491216    rs141977140    C    T    32.97    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7537;MQ=6.83;MQ0=24;MQRankSum=1.495;QD=1.06;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:25,5:31:8.94:65,9,0
10    135491222    rs138225211    C    T    54.17    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7537;MQ=6.62;MQ0=27;MQRankSum=0.736;QD=1.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:28,5:33:11.92:87,12,0
10    135491226    rs140948438    G    C    32.97    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=30;Dels=0.03;FS=0.0;HRun=1;HaplotypeScore=5.8335;MQ=6.11;MQ0=26;MQRankSum=0.727;QD=1.06;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XX-2136C48.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556057    GT:AD:DP:GQ:PL    1/1:27,3:30:8.94:65,9,0
11    180225    rs13377545    A    G    67.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.54;MQ0=19;QD=2.33;SNPEFF_AMINO_ACID_CHANGE=N116;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_180209_180404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000410108    GT:AD:DP:GQ:PL    1/1:14,15:29:9.02:100,9,0
11    193096    rs2280539    T    C    230.06    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.761;QD=17.7;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410108    GT:AD:DP:GQ:PL    0/1:3,10:13:58.91:260,0,59
11    193112    rs7951297    C    T    129.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=9.25;ReadPosRankSum=0.194;SNPEFF_AMINO_ACID_CHANGE=R5C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_193080_193154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB1C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342878    GT:AD:DP:GQ:PL    0/1:8,6:14:99:160,0,167
11    193194    rs2686896    T    C    59.39    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=5.4;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410108    GT:AD:DP:GQ:PL    0/1:7,4:11:89.38:89,0,191
11    193863    rs2294081    T    C    141.35    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=58.99;MQ0=0;MQRankSum=0.0;QD=6.15;ReadPosRankSum=-0.317;SNPEFF_AMINO_ACID_CHANGE=C69;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_193712_193911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342878    GT:AD:DP:GQ:PL    0/1:14,8:23:99:171,0,388
11    193865    rs2686894    T    G    206.33    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=58.95;MQ0=0;MQRankSum=-0.039;QD=9.38;ReadPosRankSum=-0.887;SNPEFF_AMINO_ACID_CHANGE=I70R;SNPEFF_CODON_CHANGE=aTa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_193712_193911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB1C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342878    GT:AD:DP:GQ:PL    0/1:13,9:22:99:236,0,363
11    194332    rs148277194    C    CA    63.92    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.577;DB;DP=35;FS=0.0;HRun=1;HaplotypeScore=112.8637;IndelType=I;MQ=59.46;MQ0=0;MQRankSum=0.0;QD=1.83;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410108    GT:AD:DP:GQ:PL    0/1:28,5:35:99:103,0,897
11    194640    rs2979429    G    A    69.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.9983;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=9.98;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342878    GT:AD:DP:GQ:PL    0/1:3,4:7:96.45:100,0,96
11    197557    rs7103852    A    G    201.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=27;Dels=0.0;FS=6.306;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.18;QD=7.46;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342878    GT:AD:DP:GQ:PL    0/1:18,9:27:99:231,0,520
11    199673    rs4029235    T    C    36.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325147    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
11    204062    rs2280544    T    C    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.93;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332865    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,70
11    204100    rs61876180    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    205198    rs3782123    C    A    210.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479463    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
11    205757    rs3837432    AACTCTG    A    510.61    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=99.0591;IndelType=D;MQ=49.74;MQ0=0;MQRankSum=-2.573;QD=31.91;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BET1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325147    GT:AD:DP:GQ:PL    0/1:8,8:16:99:550,0,856
11    209002    rs2177173    A    G    76.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIC8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325207    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
11    219089    rs511744    T    C    192.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIC8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325207    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:225,18,0
11    223832    rs144507767    C    A    190.16    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=28;Dels=0.0;FS=1.596;HRun=0;HaplotypeScore=0.0;MQ=57.37;MQ0=0;MQRankSum=0.599;QD=6.79;ReadPosRankSum=-1.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526854    GT:AD:DP:GQ:PL    0/1:18,10:28:99:220,0,631
11    223854    .    C    T    46.17    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DP=22;Dels=0.0;FS=2.172;HRun=0;HaplotypeScore=0.5784;MQ=57.73;MQ0=0;MQRankSum=-0.372;QD=2.1;ReadPosRankSum=-2.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526854    GT:AD:DP:GQ:PL    0/1:16,5:22:76.16:76,0,558
11    224048    rs570772    C    A    607.44    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.812;DB;DP=47;Dels=0.0;FS=4.288;HRun=0;HaplotypeScore=0.9967;MQ=58.01;MQ0=0;MQRankSum=-0.637;QD=12.92;ReadPosRankSum=-0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526854    GT:AD:DP:GQ:PL    0/1:23,24:47:99:637,0,739
11    230368    rs536715    C    T    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525237    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:68,0,73
11    232855    rs547025    T    C    41.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.41;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525237    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:72,0,32
11    233067    rs11246020    C    T    324.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.976;DB;DP=48;Dels=0.0;FS=2.76;HRun=0;HaplotypeScore=1.8936;MQ=58.55;MQ0=0;MQRankSum=-0.094;QD=6.76;ReadPosRankSum=0.07;SNPEFF_AMINO_ACID_CHANGE=V127I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_232983_233215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525319    GT:AD:DP:GQ:PL    0/1:32,16:48:99:354,0,859
11    233212    rs11555236    C    A    462.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=59.25;MQ0=0;MQRankSum=0.86;QD=18.5;ReadPosRankSum=-1.525;SNPEFF_AMINO_ACID_CHANGE=S159;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_232983_233215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382743    GT:AD:DP:GQ:PL    0/1:10,15:25:99:493,0,305
11    233298    rs12365010    T    G    431.07    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=0.204;DB;DP=25;Dels=0.0;FS=4.043;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.835;QD=17.24;ReadPosRankSum=-1.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382743    GT:AD:DP:GQ:PL    0/1:8,17:25:99:461,0,212
11    236191    .    C    A    42.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.41;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=V46;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_236048_236431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382743    GT:AD:DP:GQ:PL    0/1:2,3:5:48.16:72,0,48
11    237087    rs1045288    A    G    1188.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=N13S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_237026_237144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352303    GT:AD:DP:GQ:PL    1/1:0,38:38:93.28:1222,93,0
11    243853    rs6598061    G    A    126.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352303    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
11    243987    rs6598060    G    A    789.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.62;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352303    GT:AD:DP:GQ:PL    1/1:0,24:24:69.19:822,69,0
11    244106    rs10902112    A    G    934.05    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.91;MQ0=0;QD=22.78;SNPEFF_AMINO_ACID_CHANGE=E54G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_244041_244216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431206    GT:AD:DP:GQ:PL    1/1:0,41:41:87.19:967,87,0
11    244108    rs7107362    A    G    939.50    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.03;MQ0=0;QD=24.72;SNPEFF_AMINO_ACID_CHANGE=N55D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_244041_244216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431206    GT:AD:DP:GQ:PL    1/1:0,38:38:87.19:973,87,0
11    244115    rs7128044    G    A    999.91    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.0;MQ0=0;QD=23.25;SNPEFF_AMINO_ACID_CHANGE=C57Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_244041_244216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431206    GT:AD:DP:GQ:PL    1/1:0,43:43:90.20:1033,90,0
11    244129    rs7116130    C    T    1014.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.65;MQ0=0;QD=25.36;SNPEFF_AMINO_ACID_CHANGE=R62W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_244041_244216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431206    GT:AD:DP:GQ:PL    1/1:0,40:40:93.17:1048,93,0
11    244141    rs7128029    G    A    1059.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.35;MQ0=0;QD=26.48;SNPEFF_AMINO_ACID_CHANGE=A66T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_244041_244216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431206    GT:AD:DP:GQ:PL    1/1:0,40:40:93.22:1092,93,0
11    244167    rs1128320    C    T    769.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.0;MQ0=0;QD=24.05;SNPEFF_AMINO_ACID_CHANGE=N34;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_244161_244216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528906    GT:AD:DP:GQ:PL    1/1:1,31:32:66.20:803,66,0
11    244171    rs1128321    T    C    681.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.3;MQ0=0;QD=22.0;SNPEFF_AMINO_ACID_CHANGE=L36;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_244161_244216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528906    GT:AD:DP:GQ:PL    1/1:2,29:31:60.17:715,60,0
11    244197    rs1128322    T    C    628.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.7;MQ0=0;QD=25.12;SNPEFF_AMINO_ACID_CHANGE=H17;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_244161_244216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538343    GT:AD:DP:GQ:PL    1/1:0,25:25:54.16:661,54,0
11    244414    rs2272565    C    T    829.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.11;MQ0=0;QD=30.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352303    GT:AD:DP:GQ:PL    1/1:0,27:27:72.21:862,72,0
11    244490    rs3830667    ATACCTTTTAG    A    1318.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=306.2396;IndelType=D;MQ=35.41;MQ0=0;QD=52.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352303    GT:AD:DP:GQ:PL    1/1:9,16:25:45.15:1361,45,0
11    244552    rs2272566    A    G    693.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.866;MQ=47.42;MQ0=0;QD=28.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352303    GT:AD:DP:GQ:PL    1/1:0,24:24:63.17:727,63,0
11    247200    rs3830001    G    T    309.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352303    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:342,27,0
11    249097    rs498217    A    G    242.32    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.661;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=0.031;QD=10.1;ReadPosRankSum=0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527047    GT:AD:DP:GQ:PL    0/1:15,9:24:99:272,0,434
11    250877    rs12793187    C    T    660.18    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.171;DB;DP=59;Dels=0.0;FS=2.795;HRun=0;HaplotypeScore=3.2179;MQ=59.22;MQ0=0;MQRankSum=0.687;QD=11.19;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527047    GT:AD:DP:GQ:PL    0/1:34,25:59:99:690,0,1019
11    251034    rs6598057    C    T    122.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527047    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:155,12,0
11    252318    rs6598055    C    T    45.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527047    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    280673    rs12807092    C    T    150.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.1;SNPEFF_AMINO_ACID_CHANGE=S313;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_280084_281839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312165    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:183,15,0
11    284093    rs9734280    A    G    279.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527946    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
11    284257    rs11246050    G    A    415.42    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.406;DB;DP=38;Dels=0.0;FS=1.409;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.073;QD=10.93;ReadPosRankSum=0.953;SNPEFF_AMINO_ACID_CHANGE=A742;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_284230_284400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534750    GT:AD:DP:GQ:PL    0/1:24,14:38:99:445,0,675
11    284538    rs6598047    T    C    134.55    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.784;QD=6.73;ReadPosRankSum=-1.94;SNPEFF_AMINO_ACID_CHANGE=P811;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_284475_284642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534750    GT:AD:DP:GQ:PL    0/1:11,9:20:99:165,0,292
11    284716    rs760059    C    T    77.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527946    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
11    290816    rs10902120    A    G    789.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=A203;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_290678_291113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATHL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409479    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:822,63,0
11    292798    rs11602423    A    G    295.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529087    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
11    293001    rs71462081    A    AG    742.33    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.761;DB;DP=49;FS=0.0;HRun=2;HaplotypeScore=180.1177;IndelType=I;MQ=59.0;MQ0=0;MQRankSum=-0.231;QD=15.15;ReadPosRankSum=-0.765;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529087    GT:AD:DP:GQ:PL    0/1:25,23:49:99:781,0,652
11    293188    rs12801980    T    C    2010    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DB;DP=181;Dels=0.0;FS=5.939;HRun=0;HaplotypeScore=1.6553;MQ=59.49;MQ0=0;MQRankSum=1.306;QD=11.1;ReadPosRankSum=-0.596;SNPEFF_AMINO_ACID_CHANGE=H255;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_293163_293235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATHL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409655    GT:AD:DP:GQ:PL    0/1:101,80:181:99:2040,0,3248
11    293785    rs12418165    C    T    705.10    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.639;DB;DP=46;Dels=0.0;FS=1.319;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.957;QD=15.33;ReadPosRankSum=1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529087    GT:AD:DP:GQ:PL    0/1:22,24:46:99:735,0,593
11    294512    .    A    ACCCCAGGCTGTCCCTCACCCCCAGACTGCCCTCTCAC    10669.97    PASS    AC=2;AF=1.00;AN=2;DP=59;FS=0.0;HRun=0;HaplotypeScore=1374.4858;IndelType=I;MQ=50.14;MQ0=0;QD=180.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529087    GT:AD:DP:GQ:PL    1/1:38,4:59:99:10670,132,0
11    307961    rs3888187    A    C    63.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=53.29;MQ0=0;MQRankSum=-1.422;QD=7.04;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533141    GT:AD:DP:GQ:PL    0/1:6,3:9:93.33:93,0,193
11    308015    rs111817998    T    C    117.25    SnpCluster    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.042;DB;DP=19;Dels=0.0;FS=4.337;HRun=1;HaplotypeScore=0.9995;MQ=50.14;MQ0=0;MQRankSum=-3.592;QD=6.17;ReadPosRankSum=-1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533141    GT:AD:DP:GQ:PL    0/1:12,7:19:99:147,0,442
11    308022    rs113226129    C    T    73.59    SnpCluster    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.463;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=48.75;MQ0=0;MQRankSum=-4.171;QD=3.07;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533141    GT:AD:DP:GQ:PL    0/1:13,11:24:99:104,0,481
11    308025    rs111286829    C    A    43.89    QDFilter2;SnpCluster    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.868;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=49.7;MQ0=0;MQRankSum=-4.308;QD=1.69;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533141    GT:AD:DP:GQ:PL    0/1:15,11:26:73.88:74,0,555
11    308028    rs112149112    C    T    121.95    SnpCluster    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=50.12;MQ0=0;MQRankSum=-4.192;QD=4.52;ReadPosRankSum=-1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533141    GT:AD:DP:GQ:PL    0/1:14,12:27:99:152,0,517
11    308065    rs9704108    T    C    1670.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.89;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533141    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1703,132,0
11    308290    rs1058900    T    C    1125.33    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.371;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3339;MQ=59.17;MQ0=0;MQRankSum=-0.954;QD=14.43;ReadPosRankSum=-0.693;SNPEFF_AMINO_ACID_CHANGE=V13A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_308231_308438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533141    GT:AD:DP:GQ:PL    0/1:35,43:78:99:1155,0,1094
11    314207    rs9667990    C    G    2138.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=29.3;SNPEFF_AMINO_ACID_CHANGE=P13A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_313997_314356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328221    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2172,175,0
11    320115    rs28435867    G    A    169.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.58;MQ0=0;QD=28.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328221    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
11    320394    rs6421983    C    T    305.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.86;MQ0=0;QD=30.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270031    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:338,27,0
11    320836    rs34481144    C    T    3565.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.85;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526811    GT:AD:DP:GQ:PL    1/1:1,113:114:99:3566,271,0
11    320988    rs7479267    G    A    188.94    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=43.01;MQ0=0;QD=11.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526811    GT:AD:DP:GQ:PL    1/1:0,17:17:24.01:222,24,0
11    320991    rs71452596    G    T    119.06    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.41;MQ0=0;QD=8.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526811    GT:AD:DP:GQ:PL    1/1:0,14:14:17.96:152,18,0
11    320994    rs7478728    G    A    172.23    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.41;MQ0=0;QD=12.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFITM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526811    GT:AD:DP:GQ:PL    1/1:0,14:14:23.96:205,24,0
11    373408    .    AC    A    358.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.239;DP=27;FS=0.0;HRun=11;HaplotypeScore=159.6328;IndelType=D;MQ=56.06;MQ0=1;MQRankSum=1.569;QD=12.82;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=B4GALNT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530717    GT:AD:DP:GQ:PL    1/1:10,14:27:28.04:401,28,0
11    373419    rs10624593    CA    C    55.71    QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=0.611;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=234.8183;IndelType=D;MQ=53.84;MQ0=1;MQRankSum=-0.398;QD=1.64;ReadPosRankSum=-1.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=B4GALNT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530717    GT:AD:DP:GQ:PL    0/1:29,5:33:94.74:95,0,225
11    396473    rs7112031    T    C    85.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
11    396701    rs11246147    C    T    250.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
11    396915    rs12419281    C    T    215.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_AMINO_ACID_CHANGE=N138;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_396814_397445;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
11    397706    rs9795298    T    C    483.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527442    GT:AD:DP:GQ:PL    1/1:0,19:19:39.13:517,39,0
11    397732    rs9795299    T    G    523.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527442    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:556,42,0
11    398850    rs77298360    G    C    69.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=11.61;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524646    GT:AD:DP:GQ:PL    0/1:3,3:6:52.74:100,0,53
11    398863    .    C    G    68.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=11.48;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524646    GT:AD:DP:GQ:PL    0/1:3,3:6:98.90:99,0,107
11    400109    rs8858    A    G    263.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_AMINO_ACID_CHANGE=A472;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_399967_400141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:297,24,0
11    403484    rs74045276    G    C    176.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526971    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:210,18,0
11    403880    rs10794318    G    C    83.91    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=6.45;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526971    GT:AD:DP:GQ:PL    0/1:8,5:13:99:114,0,279
11    403939    rs7479832    A    G    366.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526971    GT:AD:DP:GQ:PL    1/1:0,13:13:36.06:399,36,0
11    403980    rs11748    G    A    672.64    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.878;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.503;QD=17.7;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=P705;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_403943_404135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    0/1:16,22:38:99:703,0,402
11    404317    rs1134578    C    T    439.33    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.563;DB;DP=40;Dels=0.0;FS=5.035;HRun=2;HaplotypeScore=0.5784;MQ=59.53;MQ0=0;MQRankSum=0.34;QD=10.98;ReadPosRankSum=-0.285;SNPEFF_AMINO_ACID_CHANGE=F784;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_404236_404323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    0/1:22,18:40:99:469,0,740
11    404468    rs11246148    G    A    343.65    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.802;DB;DP=36;Dels=0.0;FS=1.419;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.119;QD=9.55;ReadPosRankSum=1.314;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526971    GT:AD:DP:GQ:PL    0/1:22,14:36:99:374,0,647
11    406043    rs7947    G    A    340.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=L459F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_405903_406538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGIRR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382520    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:374,30,0
11    406473    rs3087588    A    C    1381.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_AMINO_ACID_CHANGE=P315;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_406349_406538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGIRR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332725    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1415,114,0
11    406483    rs3210908    T    C    1373.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.86;SNPEFF_AMINO_ACID_CHANGE=Q312R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_406349_406538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGIRR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332725    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1406,117,0
11    406615    rs10902159    C    T    58.77    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=7.35;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    0/1:5,3:8:88.77:89,0,180
11    407708    rs6421977    A    C    542.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:575,45,0
11    408352    rs7396562    C    A    127.05    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=3.802;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.244;QD=10.59;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    0/1:7,5:12:99:157,0,235
11    408561    rs113524008    G    A    478.97    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=4.925;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-1.318;QD=14.09;ReadPosRankSum=-1.526;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331563    GT:AD:DP:GQ:PL    0/1:19,15:34:99:509,0,547
11    428385    rs10794323    A    G    423.95    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.143;DB;DP=31;Dels=0.0;FS=3.333;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.187;QD=13.68;ReadPosRankSum=-1.434;SNPEFF_AMINO_ACID_CHANGE=C399R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_428358_428394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANO9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332826    GT:AD:DP:GQ:PL    0/1:15,16:31:99:454,0,406
11    428489    rs10794324    T    C    343.16    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=34;Dels=0.0;FS=1.376;HRun=0;HaplotypeScore=0.0;MQ=57.37;MQ0=0;MQRankSum=0.633;QD=10.09;ReadPosRankSum=0.56;SNPEFF_AMINO_ACID_CHANGE=I391V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_428475_428639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANO9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332826    GT:AD:DP:GQ:PL    0/1:18,16:34:99:373,0,546
11    431622    rs112862125    C    T    91.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=51.21;MQ0=0;MQRankSum=0.198;QD=11.42;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332826    GT:AD:DP:GQ:PL    0/1:3,5:8:61.51:121,0,62
11    431834    rs55914928    A    G    272.06    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=23;Dels=0.0;FS=1.74;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.106;QD=11.83;ReadPosRankSum=0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332826    GT:AD:DP:GQ:PL    0/1:12,11:23:99:302,0,384
11    433387    rs7395065    A    G    1587.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=59.56;MQ0=0;QD=29.96;SNPEFF_AMINO_ACID_CHANGE=F93L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_433314_433459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANO9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332826    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1621,132,0
11    433532    rs7395790    C    G    107.81    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.061;QD=6.74;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332826    GT:AD:DP:GQ:PL    0/1:11,5:16:99:138,0,291
11    433617    rs7394715    T    C    61.50    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.79;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANO9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332826    GT:AD:DP:GQ:PL    0/1:4,3:7:91.49:91,0,98
11    497880    rs139668932    TCACA    T    279.75    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=57.0715;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=-0.365;QD=27.97;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524780    GT:AD:DP:GQ:PL    0/1:4,6:10:99:319,0,299
11    534242    rs12628    A    G    224.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.06;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.417;QD=8.98;ReadPosRankSum=0.835;SNPEFF_AMINO_ACID_CHANGE=H27;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_534212_534375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HRAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311189    GT:AD:DP:GQ:PL    0/1:15,10:25:99:254,0,405
11    549959    rs7942030    C    T    1076.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_AMINO_ACID_CHANGE=L128;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_549902_549998;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270115    GT:AD:DP:GQ:PL    1/1:0,31:31:87.23:1109,87,0
11    550028    rs11246180    C    G    1607    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.23;MQ0=0;QD=33.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1640,129,0
11    551405    rs7396875    G    A    142.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=28.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
11    551753    rs4963198    G    A    543.11    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.043;DB;DP=32;Dels=0.0;FS=3.541;HRun=0;HaplotypeScore=1.9979;MQ=59.28;MQ0=0;MQRankSum=-0.516;QD=16.97;ReadPosRankSum=0.301;SNPEFF_AMINO_ACID_CHANGE=R300H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_551651_551827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270115    GT:AD:DP:GQ:PL    0/1:13,19:32:99:573,0,362
11    552547    rs3740652    T    C    205.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:238,18,0
11    552756    rs12361381    T    C    175.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=21.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:208,15,0
11    552787    rs12361383    T    C    93.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:126,12,0
11    553866    rs12792519    G    A    326.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.231;DB;DP=26;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.41;QD=12.55;ReadPosRankSum=0.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    0/1:13,13:26:99:356,0,372
11    554047    rs12793222    G    A    1151.59    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=61;Dels=0.0;FS=1.231;HRun=0;HaplotypeScore=1.8218;MQ=59.63;MQ0=0;MQRankSum=-0.819;QD=18.57;ReadPosRankSum=-0.308;SNPEFF_AMINO_ACID_CHANGE=R467Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_553963_554916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270115    GT:AD:DP:GQ:PL    0/1:22,39:61:99:1182,0,650
11    554166    rs10902170    C    G    779.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_AMINO_ACID_CHANGE=R507G;SNPEFF_CODON_CHANGE=Cgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_553963_554916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270115    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:812,63,0
11    554214    rs10902171    G    C    583.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_AMINO_ACID_CHANGE=D523H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_553963_554916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270115    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:616,45,0
11    554299    rs10902172    C    G    203.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:237,18,0
11    556121    rs936467    G    A    116.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441853    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:149,12,0
11    556457    rs28407128    T    C    128.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441853    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
11    556521    rs28406183    C    G    78.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.61;SNPEFF_AMINO_ACID_CHANGE=P348;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_556492_556588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:110,9,0
11    556857    rs7938269    G    C    169.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.18;SNPEFF_AMINO_ACID_CHANGE=G318;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_556835_557097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
11    557342    rs936466    T    C    395.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486629    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:429,33,0
11    558884    rs2061586    C    T    569.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=A44T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_558856_558979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329451    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:603,48,0
11    559016    rs3943356    C    T    714.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_AMINO_ACID_CHANGE=E10K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_558856_559062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000486629    GT:AD:DP:GQ:PL    1/1:0,25:25:57.16:747,57,0
11    587425    rs12800061    C    A    1157.80    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=84;Dels=0.0;FS=2.948;HRun=0;HaplotypeScore=0.8667;MQ=59.28;MQ0=0;MQRankSum=1.038;QD=13.78;ReadPosRankSum=-1.736;SNPEFF_AMINO_ACID_CHANGE=A123;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_587259_587464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533464    GT:AD:DP:GQ:PL    0/1:41,43:84:99:1188,0,1219
11    598117    .    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264555    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    601785    rs2396545    T    C    63.15    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.99;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.078;QD=2.34;ReadPosRankSum=-0.961;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264555    GT:AD:DP:GQ:PL    0/1:19,8:27:93.14:93,0,625
11    605856    rs4623937    T    C    70.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264555    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:102,9,0
11    606656    rs936470    G    C    363.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264555    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:396,30,0
11    606974    rs12421174    C    G    630    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.049;DB;DP=55;Dels=0.0;FS=7.991;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.11;QD=11.45;ReadPosRankSum=0.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532550    GT:AD:DP:GQ:PL    0/1:31,24:55:99:660,0,1089
11    607050    rs12421184    C    A    1390.36    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=95;Dels=0.0;FS=6.875;HRun=1;HaplotypeScore=0.734;MQ=59.51;MQ0=0;MQRankSum=0.968;QD=14.64;ReadPosRankSum=0.401;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532550    GT:AD:DP:GQ:PL    0/1:47,48:95:99:1420,0,1468
11    607175    rs936468    G    A    907.91    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.87;DB;DP=57;Dels=0.0;FS=2.774;HRun=0;HaplotypeScore=1.3123;MQ=59.6;MQ0=0;MQRankSum=1.54;QD=15.93;ReadPosRankSum=-3.28;SNPEFF_AMINO_ACID_CHANGE=P569;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_607066_609720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533464    GT:AD:DP:GQ:PL    0/1:29,28:57:99:938,0,942
11    609068    rs7928902    G    A    95.63    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.978;QD=7.36;ReadPosRankSum=1.256;SNPEFF_AMINO_ACID_CHANGE=A1200;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_607066_609720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533464    GT:AD:DP:GQ:PL    0/1:8,5:13:99:126,0,192
11    609353    rs11539530    G    A    676.67    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=45;Dels=0.0;FS=4.268;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.307;QD=15.04;ReadPosRankSum=1.172;SNPEFF_AMINO_ACID_CHANGE=P1295;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_607066_609720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533464    GT:AD:DP:GQ:PL    0/1:21,24:45:99:707,0,595
11    610277    rs11246212    T    C    164.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.55;SNPEFF_AMINO_ACID_CHANGE=V1445A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_610196_610347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533464    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:198,15,0
11    610724    rs35482931    C    T    711.89    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.52;DB;DP=43;Dels=0.0;FS=9.322;HRun=0;HaplotypeScore=0.0;MQ=56.7;MQ0=0;MQRankSum=2.656;QD=16.56;ReadPosRankSum=1.106;SNPEFF_AMINO_ACID_CHANGE=A1543V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_610501_610761;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PHRF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533464    GT:AD:DP:GQ:PL    0/1:18,25:43:99:742,0,464
11    611503    rs7941547    G    A    263.06    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=59.11;MQ0=0;MQRankSum=-0.387;QD=12.53;ReadPosRankSum=0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330243    GT:AD:DP:GQ:PL    0/1:10,11:21:99:293,0,240
11    611531    rs12419618    G    A    370.25    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.185;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.4;MQ0=0;MQRankSum=-0.104;QD=11.94;ReadPosRankSum=0.145;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330243    GT:AD:DP:GQ:PL    0/1:16,15:31:99:400,0,558
11    611919    rs702966    C    G    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326366    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:74,0,27
11    612843    rs10902178    T    G    287.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.707;QD=13.08;ReadPosRankSum=0.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326366    GT:AD:DP:GQ:PL    0/1:11,11:22:99:318,0,364
11    612967    rs11246213    A    G    678.17    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=49;Dels=0.0;FS=2.508;HRun=0;HaplotypeScore=1.8315;MQ=60.0;MQ0=0;MQRankSum=0.67;QD=13.84;ReadPosRankSum=0.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326366    GT:AD:DP:GQ:PL    0/1:24,25:49:99:708,0,636
11    613165    rs1051390    G    C    166.23    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=17;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=9.78;ReadPosRankSum=1.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326366    GT:AD:DP:GQ:PL    0/1:10,7:17:99:196,0,335
11    613192    rs12422022    A    G    145.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=9.07;ReadPosRankSum=1.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326366    GT:AD:DP:GQ:PL    0/1:9,6:16:99:175,0,258
11    613208    rs1131665    T    C    218.69    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=13.67;ReadPosRankSum=-1.799;SNPEFF_AMINO_ACID_CHANGE=Q119R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_613206_613595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397562    GT:AD:DP:GQ:PL    0/1:7,9:16:99:249,0,210
11    613297    rs1061505    T    G    136.17    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=14;Dels=0.0;FS=2.808;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=9.73;ReadPosRankSum=-0.715;SNPEFF_AMINO_ACID_CHANGE=G276;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_613206_613595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525445    GT:AD:DP:GQ:PL    0/1:3,11:14:92.80:166,0,93
11    614864    rs1061501    C    T    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_AMINO_ACID_CHANGE=R109;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_614797_615007;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348655    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
11    616970    rs1610161    A    T    176.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=22.0;SNPEFF_AMINO_ACID_CHANGE=H444Q;SNPEFF_CODON_CHANGE=caT/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_616838_617008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326366    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:209,15,0
11    617214    rs35600572    A    G    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349570    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    617378    rs61877856    C    T    55.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=11;Dels=0.0;FS=10.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=5.06;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=A643;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_617256_617770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349570    GT:AD:DP:GQ:PL    0/1:6,4:11:85.63:86,0,223
11    617420    rs61877857    A    G    74.50    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DB;DP=14;Dels=0.0;FS=11.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=5.32;ReadPosRankSum=0.667;SNPEFF_AMINO_ACID_CHANGE=D629;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_617256_617770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349570    GT:AD:DP:GQ:PL    0/1:9,5:14:99:104,0,313
11    617537    rs2740380    C    T    210.96    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=17;Dels=0.0;FS=16.154;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=12.41;ReadPosRankSum=-0.74;SNPEFF_AMINO_ACID_CHANGE=P590;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_617256_617770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349570    GT:AD:DP:GQ:PL    0/1:7,10:17:91.35:241,0,91
11    617967    rs2740379    C    G    545.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=32.08;SNPEFF_AMINO_ACID_CHANGE=C508S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_617954_618111;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349570    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:578,42,0
11    618013    rs7108757    C    T    47.68    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.135;DB;DP=19;Dels=0.0;FS=2.769;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.538;QD=2.51;ReadPosRankSum=0.269;SNPEFF_AMINO_ACID_CHANGE=A493T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_617954_618111;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349570    GT:AD:DP:GQ:PL    0/1:14,5:19:77.68:78,0,404
11    618172    rs6598008    A    G    228.40    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.747;QD=28.55;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526077    GT:AD:DP:GQ:PL    0/1:1,7:8:15.93:258,0,16
11    618998    rs2740375    G    A    482.69    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.037;DB;DP=46;Dels=0.0;FS=1.498;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.33;QD=10.49;ReadPosRankSum=1.626;SNPEFF_AMINO_ACID_CHANGE=P521S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_618599_619180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358353    GT:AD:DP:GQ:PL    0/1:26,20:46:99:513,0,663
11    619671    rs1124816    C    T    56.92    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.74;QD=4.74;ReadPosRankSum=-1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526077    GT:AD:DP:GQ:PL    0/1:9,3:12:86.91:87,0,296
11    619789    rs2246614    T    G    151.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=15.12;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=R357S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_619681_619881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326366    GT:AD:DP:GQ:PL    0/1:4,6:10:99:181,0,125
11    621795    rs12801890    G    A    155.46    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.569;DB;DP=29;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.077;QD=5.36;ReadPosRankSum=-1.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529337    GT:AD:DP:GQ:PL    0/1:19,9:29:99:185,0,507
11    622044    rs61879160    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDHR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529337    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
11    639374    rs79174556    C    G    77.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:109,9,0
11    640090    rs3889692    G    C    76.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9983;MQ=51.77;MQ0=0;MQRankSum=1.38;QD=12.79;ReadPosRankSum=-1.38;SNPEFF_AMINO_ACID_CHANGE=A281P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_639648_640306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000176183    GT:AD:DP:GQ:PL    0/1:2,4:6:44.08:107,0,44
11    640099    rs34662058    A    G    69.62    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=1.9966;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.6;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=S284G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_639648_640306;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000176183    GT:AD:DP:GQ:PL    0/1:1,5:6:21.40:100,0,21
11    640369    rs7482904    G    C    275.83    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=14;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.157;QD=19.7;ReadPosRankSum=-0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    0/1:4,10:14:99:306,0,106
11    654043    rs10902188    G    A    159.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=8.85;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=C427;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_653962_654051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388804    GT:AD:DP:GQ:PL    0/1:9,9:18:99:189,0,289
11    654109    rs7109899    A    G    202.98    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=15.61;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    0/1:6,7:13:99:233,0,177
11    654147    rs7106020    T    G    52.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=7.54;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    0/1:3,3:7:76.24:83,0,76
11    674454    rs11246258    G    T    341.06    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.185;DB;DP=35;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.6651;MQ=59.34;MQ0=0;MQRankSum=-1.898;QD=9.74;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    0/1:18,17:35:99:371,0,600
11    674458    rs6597997    G    A    483.30    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=39;Dels=0.0;FS=1.294;HRun=0;HaplotypeScore=0.6651;MQ=59.41;MQ0=0;MQRankSum=0.803;QD=12.39;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    0/1:21,18:39:99:513,0,614
11    674499    rs6597996    G    A    826.36    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=4.131;DB;DP=61;Dels=0.0;FS=1.004;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.701;QD=13.55;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    0/1:29,32:61:99:856,0,745
11    678561    rs10902190    C    T    436.12    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=16.77;ReadPosRankSum=-1.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    0/1:12,14:26:99:466,0,413
11    678973    rs7935419    C    T    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
11    680866    rs7483337    A    G    138.45    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=10.65;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338675    GT:AD:DP:GQ:PL    0/1:6,7:13:99:168,0,207
11    700247    rs7482162    A    C    508.60    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=4.456;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=57.5;MQ0=0;MQRankSum=0.0;QD=14.96;ReadPosRankSum=-0.944;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524763    GT:AD:DP:GQ:PL    0/1:15,18:34:99:539,0,440
11    700458    rs7480843    T    C    446.94    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.681;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8936;MQ=57.62;MQ0=0;MQRankSum=0.227;QD=13.54;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524763    GT:AD:DP:GQ:PL    0/1:18,15:33:99:477,0,452
11    700526    rs34654075    C    CA    496.76    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=88;FS=17.722;HRun=14;HaplotypeScore=872.8448;IndelType=I;MQ=51.72;MQ0=0;MQRankSum=0.759;QD=5.64;ReadPosRankSum=-2.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524763    GT:AD:DP:GQ:PL    0/1:52,31:88:99:536,0,393
11    703175    rs7107522    A    G    72.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.01;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488769    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,99
11    709680    rs11605783    T    C    81.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527199    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
11    710558    rs7395822    G    A    733.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526380    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:766,57,0
11    710567    rs7396652    A    C    244.86    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.286;QD=12.89;ReadPosRankSum=-0.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526380    GT:AD:DP:GQ:PL    0/1:9,10:19:99:275,0,316
11    720197    rs3087546    C    T    245.21    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.749;QD=9.43;ReadPosRankSum=0.028;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_720062_720223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318562    GT:AD:DP:GQ:PL    0/1:16,10:26:99:275,0,458
11    721877    rs74916186    G    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524763    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    722202    rs9734804    G    C    317.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524763    GT:AD:DP:GQ:PL    1/1:1,10:11:30.08:351,30,0
11    726178    rs28498399    G    C    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524474    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
11    726581    rs10902206    T    C    83.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524474    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
11    726814    rs10902207    C    G    211.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524474    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:244,21,0
11    758927    rs34225557    CT    C    2546.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.0;HRun=7;HaplotypeScore=232.2422;IndelType=D;MQ=59.97;MQ0=0;QD=29.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TALDO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532685    GT:AD:DP:GQ:PL    1/1:1,85:86:99:2589,256,0
11    763998    rs3891028    G    C    747.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319863    GT:AD:DP:GQ:PL    1/1:0,22:22:63.18:780,63,0
11    772175    .    TCGGGAGCCTCCGACCTCACCTCTGGCTGTGATGGGGGAGGACAGAGCAGGGAGCACAGCCTGCCTCGGCCTCCAGGCACTCACC    T    526.89    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=0;HaplotypeScore=759.3031;IndelType=D;MQ=67.77;MQ0=0;QD=47.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528602    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:569,33,0
11    793502    rs79478359    C    T    442.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525010    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:475,36,0
11    793588    rs80335370    G    A    901.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_AMINO_ACID_CHANGE=P103;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_793529_793619;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000481290    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:934,72,0
11    799670    rs28649421    G    C    196.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528122    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
11    801644    rs113521642    A    T    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528122    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    802115    rs7479101    A    G    151.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528122    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:185,15,0
11    802125    rs28498421    T    C    216.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528122    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
11    802902    rs28360884    T    G    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530911    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    804027    rs77173309    G    A    435.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=33.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIDD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530911    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:468,36,0
11    824789    rs1138693    T    C    33.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_AMINO_ACID_CHANGE=L481P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_824523_825573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336615    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
11    824805    rs1138694    C    T    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_AMINO_ACID_CHANGE=P486;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_824523_825573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336615    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    828784    rs28507876    A    G    1685.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528315    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1719,141,0
11    828916    rs7126805    G    A    1874.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=R77Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_828852_828963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321883    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1907,144,0
11    829539    rs28558789    A    G    208.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.79;SNPEFF_AMINO_ACID_CHANGE=K153E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_829360_829540;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321883    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
11    830487    rs4075290    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527089    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    830670    rs4075289    G    T    122.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.54;SNPEFF_AMINO_ACID_CHANGE=S248I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_830621_830713;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321883    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:155,12,0
11    831122    rs7114218    C    T    488.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527089    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:522,39,0
11    836008    rs5030778    T    C    267.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321883    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:301,24,0
11    836023    rs28475448    C    T    373.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=37.32;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_835551_836153;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526439    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:406,30,0
11    836227    rs28434354    A    G    284.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321883    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
11    836971    rs28620453    G    C    80.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525333    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
11    837121    rs28655651    G    C    441.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525333    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:475,36,0
11    837582    rs1130663    G    A    391.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=G168;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_837460_837613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529810    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:425,33,0
11    838110    rs5030780    C    T    1413.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=34.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524748    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1447,108,0
11    838419    rs111334631    A    G    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524748    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
11    838424    rs113394600    C    T    52.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524748    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
11    840251    rs11629    C    G    600.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:633,48,0
11    840319    rs3059    C    T    1373.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3113;MQ=60.0;MQ0=0;MQRankSum=0.479;QD=28.03;ReadPosRankSum=0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    1/1:1,47:49:77.67:1406,78,0
11    840363    rs6591    C    T    759.90    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.948;DB;DP=72;Dels=0.0;FS=6.484;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=10.55;ReadPosRankSum=-0.614;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    0/1:43,29:72:99:790,0,1204
11    840477    rs4895    A    G    1256.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_AMINO_ACID_CHANGE=D33;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_839721_840480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POLR2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322028    GT:AD:DP:GQ:PL    1/1:0,36:36:96.29:1290,96,0
11    840578    rs34627090    AC    A    127.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=8;HaplotypeScore=40.5279;IndelType=D;MQ=61.34;MQ0=0;QD=15.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    1/1:2,6:8:18.02:170,18,0
11    840604    rs28677123    C    G    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=63.51;MQ0=0;QD=18.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
11    840639    rs28636471    T    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=65.19;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    842543    rs28372895    C    G    405.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=23.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    1/1:0,17:17:36.11:438,36,0
11    842627    rs9705236    T    C    204.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:237,18,0
11    842630    rs9704020    C    T    204.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322008    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
11    862652    rs28505621    T    C    804.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_AMINO_ACID_CHANGE=L56;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_862550_862741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346501    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:837,66,0
11    864626    rs28377158    A    G    410.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323541    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:444,33,0
11    865447    rs28423070    G    A    152    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323541    GT:AD:DP:GQ:PL    1/1:0,6:7:15.04:185,15,0
11    865503    rs28581489    G    A    382.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323541    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:416,33,0
11    866044    rs28457111    A    G    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323541    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
11    866498    rs28663055    T    C    372.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323541    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:406,33,0
11    866499    rs34165342    G    A    78.18    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.635;QD=6.01;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323541    GT:AD:DP:GQ:PL    0/1:8,5:13:99:108,0,168
11    870446    rs6682    G    A    376.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.92;SNPEFF_AMINO_ACID_CHANGE=A307V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_870419_870499;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429789    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:410,30,0
11    899627    rs28545763    G    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    900894    rs28454252    T    G    393.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525225    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:426,33,0
11    900929    rs10794339    C    G    495.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525225    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:529,39,0
11    903070    rs28380110    G    C    1308.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=V51;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_902962_903111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHID1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323578    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1342,102,0
11    971884    rs7945582    A    G    33.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AP2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529858    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
11    993694    rs36081583    G    A    65.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.9;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AP2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524952    GT:AD:DP:GQ:PL    0/1:2,4:6:55.08:95,0,55
11    993745    rs7104956    C    G    57.30    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=7.16;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AP2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524952    GT:AD:DP:GQ:PL    0/1:5,3:8:87.29:87,0,145
11    1016575    .    TG    T    84.06    QDFilter2    AB=0.944;AC=1;AF=0.50;AN=2;BaseQRankSum=5.739;DP=185;FS=36.594;HRun=1;HaplotypeScore=2961.5645;IndelType=D;MQ=46.29;MQ0=0;MQRankSum=-5.903;QD=0.41;ReadPosRankSum=-1.061;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:192,12:185:99:123,0,4963
11    1016578    .    G    GC    41.80    QDFilter2    AB=0.951;AC=1;AF=0.50;AN=2;BaseQRankSum=5.886;DP=193;FS=35.414;HRun=0;HaplotypeScore=3193.6624;IndelType=I;MQ=45.8;MQ0=0;MQRankSum=-5.673;QD=0.2;ReadPosRankSum=-1.145;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:202,11:193:80.83:81,0,5133
11    1016588    .    G    C    57.80    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=2.6;DP=215;Dels=0.0;FS=66.75;HRun=0;HaplotypeScore=100.4166;MQ=45.34;MQ0=1;MQRankSum=-6.109;QD=0.27;ReadPosRankSum=-2.871;SNPEFF_AMINO_ACID_CHANGE=T2071;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:163,50:215:87.80:88,0,3761
11    1016614    rs148793744    G    T    264.22    HaplotypeScoreFilter13;QDFilter2    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.357;DB;DP=250;DS;Dels=0.0;FS=49.64;HRun=1;HaplotypeScore=77.7117;MQ=44.3;MQ0=3;MQRankSum=-3.45;QD=1.06;ReadPosRankSum=-0.982;SNPEFF_AMINO_ACID_CHANGE=P2063T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:187,63:250:99:294,0,4494
11    1016618    rs151061093    G    C    215.64    HaplotypeScoreFilter13;QDFilter2    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.036;DB;DP=250;DS;Dels=0.0;FS=39.739;HRun=0;HaplotypeScore=45.3695;MQ=44.55;MQ0=3;MQRankSum=-4.108;QD=0.86;ReadPosRankSum=-1.131;SNPEFF_AMINO_ACID_CHANGE=A2061;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:180,67:250:99:246,0,4558
11    1016630    .    G    A    173.50    HaplotypeScoreFilter13;QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DP=250;DS;Dels=0.0;FS=5.047;HRun=0;HaplotypeScore=50.4107;MQ=44.43;MQ0=3;MQRankSum=-2.262;QD=0.69;ReadPosRankSum=-1.511;SNPEFF_AMINO_ACID_CHANGE=S2057;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:215,34:250:99:203,0,4378
11    1016655    rs77024070    G    A    258.06    HaplotypeScoreFilter13;QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=0.911;DB;DP=250;DS;Dels=0.0;FS=1.7;HRun=0;HaplotypeScore=105.4241;MQ=43.77;MQ0=4;MQRankSum=-5.281;QD=1.03;ReadPosRankSum=1.517;SNPEFF_AMINO_ACID_CHANGE=P2049L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:202,47:250:99:288,0,5009
11    1016665    rs77438942    C    T    1864.41    HaplotypeScoreFilter13    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=4.779;DB;DP=250;DS;Dels=0.0;FS=18.226;HRun=0;HaplotypeScore=47.5317;MQ=43.26;MQ0=4;MQRankSum=-7.674;QD=7.46;ReadPosRankSum=3.759;SNPEFF_AMINO_ACID_CHANGE=V2046I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:142,108:250:99:1894,0,3585
11    1016704    rs75826443    C    A    1038.97    HaplotypeScoreFilter13    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.603;DB;DP=250;DS;Dels=0.0;FS=5.702;HRun=0;HaplotypeScore=71.8956;MQ=45.89;MQ0=3;MQRankSum=-6.198;QD=4.16;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=A2033S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:180,69:250:99:1069,0,5066
11    1016713    rs76406481    T    C    799.32    HaplotypeScoreFilter13    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.304;DB;DP=248;DS;Dels=0.0;FS=15.707;HRun=0;HaplotypeScore=164.3388;MQ=46.69;MQ0=4;MQRankSum=-8.808;QD=3.21;ReadPosRankSum=-0.321;SNPEFF_AMINO_ACID_CHANGE=T2030A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:161,86:248:99:829,0,4946
11    1016722    rs144616203    T    G    599.29    HaplotypeScoreFilter13    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=1.805;DB;DP=249;DS;Dels=0.0;FS=24.236;HRun=1;HaplotypeScore=157.2783;MQ=46.72;MQ0=7;MQRankSum=-9.861;QD=2.41;ReadPosRankSum=1.288;SNPEFF_AMINO_ACID_CHANGE=T2027P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:167,82:249:99:629,0,5213
11    1016724    rs3208810    A    G    1382.93    HaplotypeScoreFilter13    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.866;DB;DP=250;DS;Dels=0.0;FS=4.664;HRun=1;HaplotypeScore=150.7918;MQ=46.78;MQ0=6;MQRankSum=-10.716;QD=5.53;ReadPosRankSum=0.213;SNPEFF_AMINO_ACID_CHANGE=I2026T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:140,110:250:99:1413,0,4677
11    1016756    .    G    A    52.49    HaplotypeScoreFilter13;QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DP=250;DS;Dels=0.0;FS=27.955;HRun=2;HaplotypeScore=31.0147;MQ=47.32;MQ0=2;MQRankSum=1.627;QD=0.21;ReadPosRankSum=-3.426;SNPEFF_AMINO_ACID_CHANGE=S2015;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:211,31:250:82.49:82,0,6295
11    1016776    rs33988517    C    T    1726.49    HaplotypeScoreFilter13    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=4.788;DB;DP=250;DS;Dels=0.0;FS=3.62;HRun=0;HaplotypeScore=71.5963;MQ=46.34;MQ0=2;MQRankSum=-0.305;QD=6.91;ReadPosRankSum=0.944;SNPEFF_AMINO_ACID_CHANGE=V2009I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:125,79:250:99:1756,0,3329
11    1016795    rs111397691    C    G    536.56    HaplotypeScoreFilter13    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=250;DS;Dels=0.0;FS=3.366;HRun=0;HaplotypeScore=21.9175;MQ=46.72;MQ0=2;MQRankSum=-2.871;QD=2.15;ReadPosRankSum=-0.389;SNPEFF_AMINO_ACID_CHANGE=Q2002H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:209,41:250:99:567,0,6264
11    1016819    .    G    T    34.99    HaplotypeScoreFilter13;QDFilter2    AB=0.912;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.21;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=47.2627;MQ=46.66;MQ0=9;MQRankSum=-1.968;QD=0.14;ReadPosRankSum=0.265;SNPEFF_AMINO_ACID_CHANGE=T1994;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:228,22:250:64.98:65,0,6983
11    1016825    .    G    A    154.81    HaplotypeScoreFilter13;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=71.8735;MQ=47.04;MQ0=8;MQRankSum=-0.871;QD=0.62;ReadPosRankSum=0.694;SNPEFF_AMINO_ACID_CHANGE=T1992;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:220,29:250:99:185,0,6604
11    1016834    rs34740154    G    A    1844.37    HaplotypeScoreFilter13    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.838;DB;DP=250;DS;Dels=0.0;FS=6.117;HRun=2;HaplotypeScore=71.1775;MQ=46.74;MQ0=6;MQRankSum=6.214;QD=7.38;ReadPosRankSum=1.857;SNPEFF_AMINO_ACID_CHANGE=F1989;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:171,79:250:99:1874,0,4983
11    1016842    rs34490696    T    G    209.15    HaplotypeScoreFilter13;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=1.255;DB;DP=250;DS;Dels=0.0;FS=8.257;HRun=1;HaplotypeScore=76.0172;MQ=47.33;MQ0=6;MQRankSum=2.292;QD=0.84;ReadPosRankSum=-0.84;SNPEFF_AMINO_ACID_CHANGE=T1987P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:220,30:250:99:239,0,6724
11    1016869    rs35469308    A    T    3766.50    HaplotypeScoreFilter13    AB=0.376;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.812;DB;DP=249;DS;Dels=0.0;FS=7.636;HRun=0;HaplotypeScore=46.9291;MQ=47.09;MQ0=5;MQRankSum=-0.026;QD=15.07;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=F1978I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:89,148:249:99:3766,0,2261
11    1016890    rs113508205    G    A    547.63    HaplotypeScoreFilter13    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.743;DB;DP=249;DS;Dels=0.0;FS=9.098;HRun=0;HaplotypeScore=85.9327;MQ=45.53;MQ0=5;MQRankSum=-1.384;QD=2.19;ReadPosRankSum=1.651;SNPEFF_AMINO_ACID_CHANGE=P1971S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:200,49:249:99:578,0,5403
11    1016894    rs34281988    G    A    2401.88    HaplotypeScoreFilter13    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.211;DB;DP=250;DS;Dels=0.0;FS=4.518;HRun=1;HaplotypeScore=75.4935;MQ=45.48;MQ0=5;MQRankSum=5.974;QD=9.61;ReadPosRankSum=0.316;SNPEFF_AMINO_ACID_CHANGE=H1969;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:158,92:250:99:2432,0,3163
11    1016910    rs113559934    G    A    1066.07    HaplotypeScoreFilter13;SnpCluster    AB=0.779;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.167;DB;DP=249;DS;Dels=0.0;FS=1.545;HRun=0;HaplotypeScore=143.8105;MQ=44.07;MQ0=3;MQRankSum=1.628;QD=4.28;ReadPosRankSum=1.262;SNPEFF_AMINO_ACID_CHANGE=T1964I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:194,55:249:99:1096,0,4149
11    1016914    rs74632841    G    T    814.39    HaplotypeScoreFilter13;SnpCluster    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=1.956;DB;DP=250;DS;Dels=0.0;FS=1.491;HRun=1;HaplotypeScore=197.0005;MQ=44.52;MQ0=2;MQRankSum=-3.481;QD=3.26;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=P1963T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:188,62:250:99:844,0,4838
11    1016918    rs34375705    C    T    344.69    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=250;DS;Dels=0.0;FS=2.079;HRun=0;HaplotypeScore=210.8957;MQ=44.15;MQ0=2;MQRankSum=4.354;QD=1.38;ReadPosRankSum=0.902;SNPEFF_AMINO_ACID_CHANGE=R1961;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:221,29:250:99:375,0,5104
11    1016928    rs34053383    C    G    4331.08    HaplotypeScoreFilter13    AB=0.145;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=242;DS;Dels=0.0;FS=19.183;HRun=1;HaplotypeScore=105.563;MQ=44.58;MQ0=2;MQRankSum=-6.248;QD=17.9;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=S1958T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:35,207:242:99:4331,0,866
11    1016933    .    C    T    538.60    HaplotypeScoreFilter13    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=6.127;DP=250;DS;Dels=0.0;FS=49.432;HRun=0;HaplotypeScore=68.6903;MQ=44.5;MQ0=2;MQRankSum=-6.434;QD=2.15;ReadPosRankSum=-0.292;SNPEFF_AMINO_ACID_CHANGE=S1956;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:178,72:250:99:569,0,4569
11    1016957    .    T    G    142.66    FSFilter60;HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=4.896;DP=246;DS;Dels=0.0;FS=106.107;HRun=0;HaplotypeScore=221.9127;MQ=44.55;MQ0=2;MQRankSum=-8.177;QD=0.58;ReadPosRankSum=-0.978;SNPEFF_AMINO_ACID_CHANGE=R1948S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:175,68:246:99:173,0,5286
11    1016960    rs113980831    G    T    579.92    HaplotypeScoreFilter13;SnpCluster    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.328;DB;DP=250;DS;Dels=0.0;FS=45.481;HRun=1;HaplotypeScore=254.2628;MQ=44.47;MQ0=1;MQRankSum=2.619;QD=2.32;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=T1947;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:215,35:250:99:610,0,5018
11    1016963    rs76273000    G    T    74.88    FSFilter60;HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=3.379;DB;DP=250;DS;Dels=0.0;FS=121.68;HRun=1;HaplotypeScore=257.2012;MQ=44.79;MQ0=2;MQRankSum=-7.67;QD=0.3;ReadPosRankSum=-1.524;SNPEFF_AMINO_ACID_CHANGE=G1946;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:185,64:250:99:105,0,5504
11    1016976    rs78728217    T    G    290.08    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=7.678;DB;DP=244;DS;Dels=0.0;FS=139.559;HRun=1;HaplotypeScore=192.6829;MQ=45.23;MQ0=2;MQRankSum=-8.453;QD=1.19;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=H1942P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:172,72:244:99:320,0,5119
11    1016978    rs76461263    T    G    798.42    HaplotypeScoreFilter13    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=250;DS;Dels=0.0;FS=30.741;HRun=1;HaplotypeScore=206.4245;MQ=45.52;MQ0=2;MQRankSum=-8.251;QD=3.19;ReadPosRankSum=0.826;SNPEFF_AMINO_ACID_CHANGE=K1941N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:149,55:250:99:828,0,4452
11    1016988    rs72311383    ATGT    A    1260.08    PASS    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=8.512;DB;DP=235;DS;FS=90.823;HRun=0;HaplotypeScore=4084.7255;IndelType=D;MQ=45.77;MQ0=3;MQRankSum=-7.615;QD=5.04;ReadPosRankSum=-0.42;SNPEFF_AMINO_ACID_CHANGE=NI1937I;SNPEFF_CODON_CHANGE=aacatc/atc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:213,37:235:99:1299,0,10044
11    1017023    rs78989655    G    A    160.99    HaplotypeScoreFilter13;QDFilter2    AB=0.893;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.439;DB;DP=243;DS;Dels=0.0;FS=17.58;HRun=0;HaplotypeScore=85.8468;MQ=48.43;MQ0=0;MQRankSum=-2.556;QD=0.66;ReadPosRankSum=-1.378;SNPEFF_AMINO_ACID_CHANGE=H1926;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:217,26:243:99:191,0,6051
11    1017029    rs35621365    T    G    3192.52    HaplotypeScoreFilter13    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.291;DB;DP=250;DS;Dels=0.0;FS=30.372;HRun=1;HaplotypeScore=117.4886;MQ=48.33;MQ0=0;MQRankSum=-2.294;QD=12.77;ReadPosRankSum=1.041;SNPEFF_AMINO_ACID_CHANGE=S1924;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:106,144:250:99:3223,0,2898
11    1017040    .    GGT    G    1742.87    PASS    AB=0.969;AC=1;AF=0.50;AN=2;BaseQRankSum=10.899;DP=237;DS;FS=8.655;HRun=0;HaplotypeScore=3329.6413;IndelType=D;MQ=48.24;MQ0=0;MQRankSum=-9.257;QD=7.0;ReadPosRankSum=1.581;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:238,8:237:99:1782,0,9512
11    1017045    rs77885750    G    T    650.94    HaplotypeScoreFilter13    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=0.557;DB;DP=249;DS;Dels=0.0;FS=8.78;HRun=0;HaplotypeScore=108.9261;MQ=48.06;MQ0=0;MQRankSum=-9.367;QD=2.61;ReadPosRankSum=-0.075;SNPEFF_AMINO_ACID_CHANGE=P1919H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:176,73:249:99:681,0,5500
11    1017069    rs80333708    G    A    825.29    HaplotypeScoreFilter13    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=3.848;DB;DP=250;DS;Dels=0.0;FS=21.724;HRun=0;HaplotypeScore=107.6809;MQ=47.21;MQ0=0;MQRankSum=0.238;QD=3.3;ReadPosRankSum=0.254;SNPEFF_AMINO_ACID_CHANGE=T1911M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:204,46:250:99:855,0,5296
11    1017084    rs34649796    G    A    1504.27    HaplotypeScoreFilter13    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.726;DB;DP=250;DS;Dels=0.0;FS=3.592;HRun=0;HaplotypeScore=80.3111;MQ=46.19;MQ0=0;MQRankSum=2.834;QD=6.02;ReadPosRankSum=0.676;SNPEFF_AMINO_ACID_CHANGE=P1906L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:178,71:250:99:1534,0,4771
11    1017113    rs78353090    T    C    967.29    HaplotypeScoreFilter13    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.797;DB;DP=250;DS;Dels=0.0;FS=14.988;HRun=0;HaplotypeScore=114.6336;MQ=43.44;MQ0=2;MQRankSum=-7.855;QD=3.87;ReadPosRankSum=0.374;SNPEFF_AMINO_ACID_CHANGE=T1896;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:111,120:250:99:997,0,3126
11    1017135    .    G    A    75.37    QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.781;DP=250;DS;Dels=0.0;FS=46.404;HRun=0;HaplotypeScore=10.1335;MQ=42.77;MQ0=1;MQRankSum=-1.142;QD=0.3;ReadPosRankSum=-0.714;SNPEFF_AMINO_ACID_CHANGE=T1889I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:217,33:250:99:105,0,5453
11    1017154    rs112965257    T    G    584.40    HaplotypeScoreFilter13    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=5.502;DB;DP=250;DS;Dels=0.0;FS=14.094;HRun=0;HaplotypeScore=60.2499;MQ=42.38;MQ0=2;MQRankSum=-8.592;QD=2.34;ReadPosRankSum=3.589;SNPEFF_AMINO_ACID_CHANGE=I1883L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:181,69:250:99:614,0,5183
11    1017158    rs36143620    G    T    541.73    HaplotypeScoreFilter13    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=2.51;DB;DP=250;DS;Dels=0.0;FS=16.701;HRun=1;HaplotypeScore=59.0064;MQ=41.32;MQ0=3;MQRankSum=-8.569;QD=2.17;ReadPosRankSum=3.477;SNPEFF_AMINO_ACID_CHANGE=T1881;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:183,67:250:99:572,0,5208
11    1017173    rs61869004    G    A    1227.81    HaplotypeScoreFilter13    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.77;DB;DP=250;DS;Dels=0.0;FS=2.871;HRun=0;HaplotypeScore=71.234;MQ=41.21;MQ0=7;MQRankSum=-1.199;QD=4.91;ReadPosRankSum=1.356;SNPEFF_AMINO_ACID_CHANGE=T1876;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:185,64:250:99:1258,0,4692
11    1017183    rs34844844    G    T    972.34    HaplotypeScoreFilter13    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.615;DB;DP=250;DS;Dels=0.0;FS=6.267;HRun=2;HaplotypeScore=102.3917;MQ=41.03;MQ0=12;MQRankSum=1.273;QD=3.89;ReadPosRankSum=1.897;SNPEFF_AMINO_ACID_CHANGE=P1873Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:195,55:250:99:1002,0,4689
11    1017186    rs74579726    A    G    255.70    HaplotypeScoreFilter13;QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.178;DB;DP=250;DS;Dels=0.0;FS=13.414;HRun=0;HaplotypeScore=51.1195;MQ=40.51;MQ0=13;MQRankSum=-7.381;QD=1.02;ReadPosRankSum=-3.135;SNPEFF_AMINO_ACID_CHANGE=M1872T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:196,54:250:99:286,0,5398
11    1017220    rs56238842    T    C    2979    HaplotypeScoreFilter13    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.823;DB;DP=250;DS;Dels=0.0;FS=6.667;HRun=0;HaplotypeScore=59.1495;MQ=41.23;MQ0=19;MQRankSum=-8.624;QD=11.92;ReadPosRankSum=-0.499;SNPEFF_AMINO_ACID_CHANGE=T1861A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:86,161:250:99:3009,0,2262
11    1017231    rs35840539    A    G    2878.20    HaplotypeScoreFilter13;SnpCluster    AB=0.279;AC=1;AF=0.50;AN=2;BaseQRankSum=3.786;DB;DP=248;DS;Dels=0.0;FS=4.69;HRun=3;HaplotypeScore=86.2732;MQ=40.06;MQ0=19;MQRankSum=-10.61;QD=11.51;ReadPosRankSum=-0.882;SNPEFF_AMINO_ACID_CHANGE=I1857T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:69,178:248:99:2908,0,2029
11    1017239    rs56386804    C    T    2350.88    HaplotypeScoreFilter13;SnpCluster    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=3.454;DB;DP=248;DS;Dels=0.0;FS=6.837;HRun=0;HaplotypeScore=79.5051;MQ=41.06;MQ0=19;MQRankSum=-10.207;QD=9.48;ReadPosRankSum=0.489;SNPEFF_AMINO_ACID_CHANGE=T1854;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:79,168:248:99:2381,0,2169
11    1017240    rs62891761    G    A    1617.85    HaplotypeScoreFilter13;SnpCluster    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.192;DB;DP=250;DS;Dels=0.0;FS=1.215;HRun=0;HaplotypeScore=78.5068;MQ=41.75;MQ0=19;MQRankSum=-4.414;QD=6.47;ReadPosRankSum=1.532;SNPEFF_AMINO_ACID_CHANGE=T1854M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:135,113:250:99:1648,0,2827
11    1017302    rs35330958    G    C    857.81    HaplotypeScoreFilter13    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=250;DS;Dels=0.0;FS=2.175;HRun=0;HaplotypeScore=63.0053;MQ=46.0;MQ0=11;MQRankSum=-7.98;QD=3.43;ReadPosRankSum=-3.564;SNPEFF_AMINO_ACID_CHANGE=H1833Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:178,71:250:99:888,0,4947
11    1017317    rs33943903    G    T    608.86    HaplotypeScoreFilter13    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.32;DB;DP=250;DS;Dels=0.0;FS=12.273;HRun=0;HaplotypeScore=107.9398;MQ=47.59;MQ0=8;MQRankSum=-5.947;QD=2.44;ReadPosRankSum=-1.371;SNPEFF_AMINO_ACID_CHANGE=T1828;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:196,53:250:99:639,0,5918
11    1017325    rs55903826    A    C    1148.76    HaplotypeScoreFilter13    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.04;DB;DP=250;DS;Dels=0.0;FS=2.861;HRun=0;HaplotypeScore=51.5881;MQ=47.08;MQ0=7;MQRankSum=2.747;QD=4.6;ReadPosRankSum=-0.469;SNPEFF_AMINO_ACID_CHANGE=Y1826D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:194,56:250:99:1179,0,5241
11    1017381    rs34912894    G    C    609.91    HaplotypeScoreFilter13    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=1.544;DB;DP=250;DS;Dels=0.0;FS=1.614;HRun=0;HaplotypeScore=36.3734;MQ=48.62;MQ0=3;MQRankSum=-7.917;QD=2.44;ReadPosRankSum=2.829;SNPEFF_AMINO_ACID_CHANGE=T1807S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:188,62:250:99:640,0,6027
11    1017384    rs34095361    G    C    979.06    HaplotypeScoreFilter13    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=2.516;DB;DP=240;DS;Dels=0.0;FS=3.078;HRun=0;HaplotypeScore=90.9431;MQ=49.1;MQ0=3;MQRankSum=-8.782;QD=4.06;ReadPosRankSum=2.726;SNPEFF_AMINO_ACID_CHANGE=T1806S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:159,81:240:99:1009,0,5251
11    1017421    rs35549382    G    T    640.47    HaplotypeScoreFilter13    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.134;DB;DP=250;DS;Dels=0.0;FS=0.676;HRun=1;HaplotypeScore=25.0604;MQ=49.06;MQ0=2;MQRankSum=-6.311;QD=2.56;ReadPosRankSum=-2.559;SNPEFF_AMINO_ACID_CHANGE=P1794T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:193,57:250:99:670,0,5686
11    1017440    rs78729877    C    T    448.21    HaplotypeScoreFilter13;QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=4.734;DB;DP=244;DS;Dels=0.0;FS=23.675;HRun=0;HaplotypeScore=53.6368;MQ=48.64;MQ0=4;MQRankSum=-7.695;QD=1.84;ReadPosRankSum=-3.921;SNPEFF_AMINO_ACID_CHANGE=S1787;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:184,60:244:99:478,0,5190
11    1017443    rs80266715    C    G    696.35    HaplotypeScoreFilter13    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.291;DB;DP=250;DS;Dels=0.0;FS=18.042;HRun=1;HaplotypeScore=63.4487;MQ=48.75;MQ0=4;MQRankSum=-10.224;QD=2.79;ReadPosRankSum=-0.694;SNPEFF_AMINO_ACID_CHANGE=T1786;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:146,73:250:99:726,0,4415
11    1017464    rs112874139    T    C    674.34    HaplotypeScoreFilter13;SnpCluster    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=2.139;DB;DP=250;DS;Dels=0.0;FS=9.642;HRun=1;HaplotypeScore=176.3492;MQ=49.15;MQ0=3;MQRankSum=-8.177;QD=2.7;ReadPosRankSum=1.96;SNPEFF_AMINO_ACID_CHANGE=R1779;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:173,55:250:99:704,0,5384
11    1017466    .    T    C    170.63    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.389;DP=249;DS;Dels=0.0;FS=52.839;HRun=1;HaplotypeScore=181.1049;MQ=48.84;MQ0=4;MQRankSum=-7.028;QD=0.69;ReadPosRankSum=2.974;SNPEFF_AMINO_ACID_CHANGE=R1779G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:205,41:249:99:201,0,6425
11    1017470    rs75533660    G    T    252.53    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=1.801;DB;DP=250;DS;Dels=0.0;FS=44.66;HRun=1;HaplotypeScore=180.3237;MQ=49.04;MQ0=4;MQRankSum=-8.341;QD=1.01;ReadPosRankSum=2.135;SNPEFF_AMINO_ACID_CHANGE=G1777;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:199,51:250:99:283,0,5956
11    1017495    rs67507057    ATGC    A    1017.88    PASS    AB=0.889;AC=1;AF=0.50;AN=2;BaseQRankSum=7.694;DB;DP=239;DS;FS=27.819;HRun=0;HaplotypeScore=3117.8279;IndelType=D;MQ=49.56;MQ0=4;MQRankSum=-7.964;QD=4.1;ReadPosRankSum=-0.172;SNPEFF_AMINO_ACID_CHANGE=SI1768I;SNPEFF_CODON_CHANGE=agcatc/atc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:217,31:239:99:1057,0,10555
11    1017514    rs79037833    A    G    976.16    HaplotypeScoreFilter13    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=249;DS;Dels=0.0;FS=14.243;HRun=2;HaplotypeScore=38.5959;MQ=50.81;MQ0=4;MQRankSum=-10.252;QD=3.92;ReadPosRankSum=3.343;SNPEFF_AMINO_ACID_CHANGE=S1763P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:172,77:249:99:1006,0,5786
11    1017691    rs77359624    C    G    1201.77    HaplotypeScoreFilter13    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.269;DB;DP=250;DS;Dels=0.0;FS=1.919;HRun=1;HaplotypeScore=40.7592;MQ=51.14;MQ0=1;MQRankSum=-7.418;QD=4.81;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=A1704P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:168,82:250:99:1232,0,5548
11    1017746    rs78848170    T    G    543.33    HaplotypeScoreFilter13    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=3.24;DB;DP=250;DS;Dels=0.0;FS=14.257;HRun=0;HaplotypeScore=61.2188;MQ=48.59;MQ0=1;MQRankSum=-8.603;QD=2.17;ReadPosRankSum=1.678;SNPEFF_AMINO_ACID_CHANGE=L1685F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:194,49:250:99:573,0,6230
11    1017767    rs75637734    G    C    259.09    HaplotypeScoreFilter13;QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.635;DB;DP=250;DS;Dels=0.0;FS=10.406;HRun=0;HaplotypeScore=103.4653;MQ=46.82;MQ0=0;MQRankSum=-4.514;QD=1.04;ReadPosRankSum=3.555;SNPEFF_AMINO_ACID_CHANGE=T1678;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:217,33:250:99:289,0,6296
11    1017773    rs57384288    G    A    302.81    HaplotypeScoreFilter13;QDFilter2    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=250;DS;Dels=0.0;FS=6.83;HRun=0;HaplotypeScore=144.6595;MQ=46.74;MQ0=0;MQRankSum=-5.338;QD=1.21;ReadPosRankSum=-2.332;SNPEFF_AMINO_ACID_CHANGE=S1676;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:193,57:250:99:333,0,5507
11    1017783    rs36101709    A    G    1611.25    HaplotypeScoreFilter13    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DB;DP=250;DS;Dels=0.0;FS=13.256;HRun=1;HaplotypeScore=235.4852;MQ=45.94;MQ0=0;MQRankSum=-4.925;QD=6.45;ReadPosRankSum=-1.588;SNPEFF_AMINO_ACID_CHANGE=L1673P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:146,101:250:99:1641,0,4217
11    1017789    rs78819924    A    C    1108.62    HaplotypeScoreFilter13    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=2.006;DB;DP=250;DS;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=195.6329;MQ=45.96;MQ0=0;MQRankSum=0.308;QD=4.43;ReadPosRankSum=-0.969;SNPEFF_AMINO_ACID_CHANGE=M1671R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:198,52:250:99:1139,0,4848
11    1017845    rs74610224    C    G    2036.77    HaplotypeScoreFilter13    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=3.685;DB;DP=250;DS;Dels=0.0;FS=0.573;HRun=1;HaplotypeScore=50.8775;MQ=41.41;MQ0=0;MQRankSum=-5.865;QD=8.15;ReadPosRankSum=1.228;SNPEFF_AMINO_ACID_CHANGE=T1652;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:124,108:250:99:2067,0,2880
11    1017858    rs79583615    A    G    1571.85    HaplotypeScoreFilter13    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.614;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.6669;MQ=40.66;MQ0=2;MQRankSum=-4.56;QD=6.29;ReadPosRankSum=-1.076;SNPEFF_AMINO_ACID_CHANGE=M1648T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:157,93:250:99:1602,0,3863
11    1017883    rs79644784    C    A    810.18    HaplotypeScoreFilter13;MQFilter40    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=250;DS;Dels=0.0;FS=19.702;HRun=0;HaplotypeScore=127.4692;MQ=38.99;MQ0=3;MQRankSum=-5.06;QD=3.24;ReadPosRankSum=-2.359;SNPEFF_AMINO_ACID_CHANGE=A1640S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:161,64:250:99:840,0,3902
11    1017893    rs76078620    A    G    555.31    HaplotypeScoreFilter13;MQFilter40    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=0.834;DB;DP=249;DS;Dels=0.0;FS=2.247;HRun=0;HaplotypeScore=154.05;MQ=39.56;MQ0=3;MQRankSum=-4.67;QD=2.23;ReadPosRankSum=2.829;SNPEFF_AMINO_ACID_CHANGE=H1636;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:180,69:249:99:585,0,4385
11    1017921    rs112301388    C    A    420.30    FSFilter60;HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=2.269;DB;DP=244;DS;Dels=0.0;FS=82.904;HRun=1;HaplotypeScore=57.0959;MQ=39.78;MQ0=7;MQRankSum=3.231;QD=1.72;ReadPosRankSum=-1.859;SNPEFF_AMINO_ACID_CHANGE=S1627I;SNPEFF_CODON_CHANGE=aGt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:196,30:244:99:450,0,4564
11    1017935    rs138784536    A    G    246.08    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.749;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=231;DS;Dels=0.0;FS=29.295;HRun=1;HaplotypeScore=136.1758;MQ=41.0;MQ0=9;MQRankSum=-7.097;QD=1.07;ReadPosRankSum=0.17;SNPEFF_AMINO_ACID_CHANGE=S1622;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:158,53:231:99:276,0,4528
11    1017939    .    G    C    36.87    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=0.098;DP=239;DS;Dels=0.0;FS=39.992;HRun=0;HaplotypeScore=146.0315;MQ=40.37;MQ0=9;MQRankSum=-3.382;QD=0.15;ReadPosRankSum=1.881;SNPEFF_AMINO_ACID_CHANGE=T1621S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:214,25:239:66.87:67,0,5158
11    1017941    rs61869007    G    T    1226.74    FSFilter60;HaplotypeScoreFilter13;SnpCluster    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.593;DB;DP=241;DS;Dels=0.0;FS=63.432;HRun=1;HaplotypeScore=147.0181;MQ=40.08;MQ0=9;MQRankSum=5.238;QD=5.09;ReadPosRankSum=-1.645;SNPEFF_AMINO_ACID_CHANGE=S1620;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:186,55:241:99:1257,0,3784
11    1017963    rs61869008    G    A    1749.46    HaplotypeScoreFilter13;MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.304;DB;DP=250;DS;Dels=0.0;FS=54.074;HRun=0;HaplotypeScore=26.4822;MQ=38.05;MQ0=8;MQRankSum=6.086;QD=7.0;ReadPosRankSum=1.272;SNPEFF_AMINO_ACID_CHANGE=P1613L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:175,75:250:99:1779,0,3207
11    1017968    rs61869009    T    A    2046.73    HaplotypeScoreFilter13;MQFilter40    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.116;DB;DP=249;DS;Dels=0.0;FS=34.402;HRun=0;HaplotypeScore=46.4796;MQ=38.11;MQ0=9;MQRankSum=6.058;QD=8.22;ReadPosRankSum=1.537;SNPEFF_AMINO_ACID_CHANGE=T1611;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:163,86:249:99:2077,0,2826
11    1017974    .    C    G    132.37    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.874;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DP=248;DS;Dels=0.0;FS=11.491;HRun=0;HaplotypeScore=49.6784;MQ=38.56;MQ0=8;MQRankSum=-0.62;QD=0.53;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=Q1609H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:215,31:248:99:162,0,4860
11    1017981    rs61869010    T    A    2527.15    HaplotypeScoreFilter13;MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.482;DB;DP=249;DS;Dels=0.0;FS=33.135;HRun=0;HaplotypeScore=85.5076;MQ=38.92;MQ0=8;MQRankSum=7.817;QD=10.11;ReadPosRankSum=0.515;SNPEFF_AMINO_ACID_CHANGE=H1607L;SNPEFF_CODON_CHANGE=cAc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:144,103:249:99:2557,0,2185
11    1018012    rs10751676    T    G    569.45    FSFilter60;HaplotypeScoreFilter13;MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.847;DB;DP=240;DS;Dels=0.0;FS=80.759;HRun=1;HaplotypeScore=17.434;MQ=38.43;MQ0=14;MQRankSum=-8.841;QD=2.37;ReadPosRankSum=0.777;SNPEFF_AMINO_ACID_CHANGE=K1597Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:140,100:240:99:599,0,3901
11    1018025    rs10751677    C    A    573.21    HaplotypeScoreFilter13;MQFilter40    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=5.945;DB;DP=229;DS;Dels=0.0;FS=10.377;HRun=0;HaplotypeScore=38.5732;MQ=39.66;MQ0=15;MQRankSum=-11.478;QD=2.5;ReadPosRankSum=-0.309;SNPEFF_AMINO_ACID_CHANGE=T1592;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:123,106:229:99:603,0,3467
11    1018031    rs10751678    G    A    361.81    HaplotypeScoreFilter13;QDFilter2    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.436;DB;DP=225;DS;Dels=0.0;FS=4.321;HRun=0;HaplotypeScore=35.7323;MQ=40.6;MQ0=13;MQRankSum=-10.949;QD=1.61;ReadPosRankSum=-1.187;SNPEFF_AMINO_ACID_CHANGE=P1590;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:124,101:225:99:392,0,3762
11    1018059    rs78336072    C    T    101.14    HaplotypeScoreFilter13;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=225;DS;Dels=0.0;FS=5.725;HRun=0;HaplotypeScore=37.9448;MQ=43.62;MQ0=13;MQRankSum=-3.748;QD=0.45;ReadPosRankSum=-3.787;SNPEFF_AMINO_ACID_CHANGE=G1581E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:199,26:225:99:131,0,4674
11    1018069    rs10736904    G    A    297.60    HaplotypeScoreFilter13;QDFilter2    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=222;DS;Dels=0.0;FS=56.48;HRun=0;HaplotypeScore=27.3077;MQ=44.51;MQ0=13;MQRankSum=-6.998;QD=1.34;ReadPosRankSum=1.459;SNPEFF_AMINO_ACID_CHANGE=P1578S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:169,53:222:99:328,0,4766
11    1018088    .    TG    T    811.64    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=9.172;DP=204;DS;FS=64.889;HRun=3;HaplotypeScore=2123.4918;IndelType=D;MQ=44.81;MQ0=12;MQRankSum=-6.607;QD=3.53;ReadPosRankSum=1.757;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:174,56:204:99:851,0,6657
11    1018093    .    G    GT    852.28    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=8.735;DP=199;DS;FS=69.116;HRun=1;HaplotypeScore=2154.6377;IndelType=I;MQ=45.24;MQ0=10;MQRankSum=-6.42;QD=3.84;ReadPosRankSum=1.98;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:168,54:199:99:891,0,5441
11    1018116    rs10902269    T    G    1351.24    FSFilter60    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.93;DB;DP=200;Dels=0.0;FS=60.788;HRun=1;HaplotypeScore=6.3585;MQ=48.85;MQ0=0;MQRankSum=-11.027;QD=6.76;ReadPosRankSum=3.459;SNPEFF_AMINO_ACID_CHANGE=N1562T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:122,78:200:99:1381,0,3868
11    1018138    rs71454075    T    C    847.18    HaplotypeScoreFilter13    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.027;DB;DP=180;Dels=0.0;FS=41.108;HRun=1;HaplotypeScore=63.7114;MQ=50.99;MQ0=0;MQRankSum=-10.023;QD=4.71;ReadPosRankSum=-1.578;SNPEFF_AMINO_ACID_CHANGE=R1555G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:122,58:180:99:877,0,4119
11    1018144    rs12807084    G    C    679.43    HaplotypeScoreFilter13    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=4.089;DB;DP=183;Dels=0.0;FS=30.29;HRun=1;HaplotypeScore=74.5026;MQ=52.22;MQ0=0;MQRankSum=-9.901;QD=3.71;ReadPosRankSum=-2.203;SNPEFF_AMINO_ACID_CHANGE=R1553G;SNPEFF_CODON_CHANGE=Cgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:131,52:183:99:709,0,3892
11    1018295    rs73403297    T    C    429.88    HaplotypeScoreFilter13    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=3.033;DB;DP=206;Dels=0.0;FS=3.26;HRun=0;HaplotypeScore=35.3268;MQ=49.82;MQ0=1;MQRankSum=-10.422;QD=2.09;ReadPosRankSum=2.387;SNPEFF_AMINO_ACID_CHANGE=I1502M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:142,64:206:99:460,0,4543
11    1018316    .    G    A    183.86    HaplotypeScoreFilter13;QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=2.206;DP=205;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=21.7784;MQ=49.6;MQ0=1;MQRankSum=-6.991;QD=0.9;ReadPosRankSum=6.411;SNPEFF_AMINO_ACID_CHANGE=S1495;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:171,32:205:99:214,0,4346
11    1018355    rs7396697    A    G    309.90    HaplotypeScoreFilter13;QDFilter2    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=2.856;DB;DP=180;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.0046;MQ=49.8;MQ0=2;MQRankSum=-10.213;QD=1.72;ReadPosRankSum=-4.612;SNPEFF_AMINO_ACID_CHANGE=G1482;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:123,56:180:99:340,0,3727
11    1018374    rs7396383    T    A    2083.01    HaplotypeScoreFilter13    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.709;DB;DP=155;Dels=0.0;FS=0.656;HRun=0;HaplotypeScore=40.3997;MQ=53.85;MQ0=3;MQRankSum=-1.152;QD=13.44;ReadPosRankSum=-0.041;SNPEFF_AMINO_ACID_CHANGE=N1476I;SNPEFF_CODON_CHANGE=aAc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:63,92:155:99:2113,0,1984
11    1018456    rs79920422    G    A    403.97    HaplotypeScoreFilter13;QDFilter2    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=250;DS;Dels=0.0;FS=4.794;HRun=0;HaplotypeScore=36.5007;MQ=43.55;MQ0=21;MQRankSum=-8.361;QD=1.62;ReadPosRankSum=1.587;SNPEFF_AMINO_ACID_CHANGE=P1449S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:176,74:250:99:434,0,4559
11    1018483    rs78265558    C    G    732.17    HaplotypeScoreFilter13    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=0.881;DB;DP=218;DS;Dels=0.0;FS=8.695;HRun=0;HaplotypeScore=18.62;MQ=44.43;MQ0=18;MQRankSum=-10.975;QD=3.36;ReadPosRankSum=-4.853;SNPEFF_AMINO_ACID_CHANGE=E1440Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:122,95:218:99:762,0,3683
11    1018496    rs67341709    G    T    67.19    QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.305;DB;DP=167;DS;Dels=0.0;FS=8.077;HRun=0;HaplotypeScore=4.6227;MQ=46.58;MQ0=18;MQRankSum=-6.311;QD=0.4;ReadPosRankSum=-1.036;SNPEFF_AMINO_ACID_CHANGE=T1435;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1015762_1018770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    0/1:133,34:167:97.19:97,0,3512
11    1019375    rs9704308    C    T    1161.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=54.25;MQ0=0;QD=27.67;SNPEFF_AMINO_ACID_CHANGE=A1310;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1019275_1019496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421673    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1195,99,0
11    1080223    rs41345548    G    T    60.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=10.12;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:3,3:6:89.18:91,0,89
11    1080391    rs41521547    G    A    180.15    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=16.38;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=E371K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1080281_1080398;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:5,6:11:99:210,0,142
11    1080846    rs11245928    A    G    432.61    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.944;DB;DP=33;Dels=0.0;FS=3.998;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.522;QD=13.11;ReadPosRankSum=-0.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:16,17:33:99:463,0,545
11    1080954    rs11245929    G    A    746.87    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.527;DB;DP=49;Dels=0.02;FS=2.614;HRun=0;HaplotypeScore=3.0897;MQ=59.51;MQ0=0;MQRankSum=-1.823;QD=14.94;ReadPosRankSum=0.286;SNPEFF_AMINO_ACID_CHANGE=T446;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1080874_1080984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:25,24:49:99:777,0,611
11    1081001    rs111397309    C    CA    685.84    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=2.189;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=146.5051;IndelType=I;MQ=59.5;MQ0=0;MQRankSum=-0.639;QD=17.15;ReadPosRankSum=1.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:22,18:40:99:725,0,794
11    1081074    rs41411848    T    C    359.75    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=43;Dels=0.0;FS=13.414;HRun=0;HaplotypeScore=1.9523;MQ=59.03;MQ0=0;MQRankSum=2.378;QD=8.37;ReadPosRankSum=-1.388;SNPEFF_AMINO_ACID_CHANGE=V457A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1081073_1081142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:29,14:43:99:390,0,755
11    1081112    rs41345745    G    C    379.55    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.505;DB;DP=39;Dels=0.0;FS=3.057;HRun=1;HaplotypeScore=0.8941;MQ=59.41;MQ0=0;MQRankSum=1.356;QD=9.73;ReadPosRankSum=0.343;SNPEFF_AMINO_ACID_CHANGE=E470Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1081073_1081142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:26,13:39:99:410,0,720
11    1081141    rs41375149    C    T    178.71    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.489;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.226;QD=5.96;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=T479;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1081073_1081142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:21,9:30:99:209,0,662
11    1081151    rs41464048    T    C    206.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.046;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.814;QD=6.87;ReadPosRankSum=-1.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:20,10:30:99:236,0,682
11    1081277    rs41352846    A    G    74.77    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=14;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.495;QD=5.34;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:10,4:14:99:105,0,363
11    1081351    rs10902082    A    G    115.84    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.641;DB;DP=23;Dels=0.0;FS=2.671;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.434;QD=5.04;ReadPosRankSum=0.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:16,7:23:99:146,0,548
11    1081381    rs10902083    A    G    269.58    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.976;DB;DP=31;Dels=0.0;FS=2.08;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.423;QD=8.7;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:17,14:31:99:300,0,524
11    1081392    rs10902084    T    C    490.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.911;DB;DP=36;Dels=0.0;FS=7.272;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=13.62;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:20,16:36:99:520,0,570
11    1081577    rs12416873    G    A    399.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.871;DB;DP=24;Dels=0.0;FS=7.144;HRun=0;HaplotypeScore=2.8596;MQ=60.0;MQ0=0;MQRankSum=1.452;QD=16.63;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:8,16:24:99:429,0,252
11    1081757    rs57737240    G    C    433.90    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.475;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.055;QD=12.4;ReadPosRankSum=-0.31;SNPEFF_AMINO_ACID_CHANGE=S562T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1081649_1081813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:16,19:35:99:464,0,377
11    1082419    rs11820653    G    A    176.19    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=13.55;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:7,6:13:99:206,0,220
11    1082424    rs41401046    G    A    122.34    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=9.41;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:7,6:13:99:152,0,227
11    1082520    rs11245930    A    G    230.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.955;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.184;QD=9.59;ReadPosRankSum=-1.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:12,12:24:99:260,0,425
11    1082533    rs41343848    G    A    334.46    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.577;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.315;QD=12.39;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:14,13:27:99:364,0,417
11    1082982    rs11245932    C    T    63.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.406;QD=10.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:3,3:6:93.59:94,0,99
11    1083293    rs7394853    T    C    266.63    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.84;MQ0=0;MQRankSum=0.317;QD=13.33;ReadPosRankSum=0.079;SNPEFF_AMINO_ACID_CHANGE=D731;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1083064_1083319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:7,13:20:99:297,0,176
11    1083364    rs7396030    G    A    130.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=10.89;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:6,6:12:99:161,0,155
11    1083495    rs11245933    G    T    92.06    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=8.37;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:7,4:11:99:122,0,200
11    1083700    rs11245934    C    T    174.26    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.386;QD=17.43;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:3,7:10:83.78:204,0,84
11    1084362    rs11245936    G    A    419.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=14.98;ReadPosRankSum=-0.023;SNPEFF_AMINO_ACID_CHANGE=G832S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1084242_1084393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:14,14:28:99:449,0,392
11    1084564    rs10794286    T    C    46.67    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.67;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:1,3:4:28.62:77,0,29
11    1084585    rs10794287    A    G    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:71,0,32
11    1084821    rs10794288    T    C    209.72    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=16.13;ReadPosRankSum=0.437;SNPEFF_AMINO_ACID_CHANGE=D872;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1084731_1084869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:5,8:13:99:240,0,170
11    1087410    rs10751639    G    C    74.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.668;QD=7.41;ReadPosRankSum=-1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:5,5:10:99:104,0,112
11    1087972    rs10902088    C    T    158.55    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.877;DB;DP=22;Dels=0.0;FS=3.981;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.809;QD=7.21;ReadPosRankSum=-1.126;SNPEFF_AMINO_ACID_CHANGE=N1149;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1087878_1088009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:14,8:22:99:189,0,422
11    1088815    rs7103978    A    G    264.22    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.993;QD=7.77;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=A1200;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1088700_1088847;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:21,13:34:99:294,0,643
11    1088835    rs41389046    C    T    343.31    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.488;DB;DP=37;Dels=0.0;FS=3.029;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=9.28;ReadPosRankSum=-0.767;SNPEFF_AMINO_ACID_CHANGE=T1207I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1088700_1088847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:23,14:37:99:373,0,760
11    1088940    rs7121682    C    T    477.08    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.816;DB;DP=42;Dels=0.0;FS=6.783;HRun=0;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;MQRankSum=0.194;QD=11.36;ReadPosRankSum=0.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:26,16:42:99:507,0,815
11    1090343    rs12221966    T    C    209.29    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.847;QD=13.08;ReadPosRankSum=0.635;SNPEFF_AMINO_ACID_CHANGE=C1213;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1090337_1090380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441003    GT:AD:DP:GQ:PL    0/1:9,7:16:99:239,0,271
11    1090731    rs41493045    T    C    555.09    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=35;Dels=0.0;FS=2.351;HRun=1;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=-0.083;QD=15.86;ReadPosRankSum=-0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:16,19:35:99:585,0,540
11    1093343    rs56002648    C    T    86.59    MQFilter40;QDFilter2    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=0.774;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8755;MQ=37.3;MQ0=7;MQRankSum=-1.302;QD=1.88;ReadPosRankSum=-1.868;SNPEFF_AMINO_ACID_CHANGE=P1688L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1093057_1093482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:35,11:46:99:117,0,577
11    1093354    rs56290335    T    A    99.19    MQFilter40    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=49;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=6.4622;MQ=35.62;MQ0=10;MQRankSum=-2.347;QD=2.02;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=S13T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1093318_1093933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333592    GT:AD:DP:GQ:PL    0/1:25,22:49:99:129,0,571
11    1093412    rs113330607    C    T    31.15    MQFilter40;QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.02;DB;DP=49;Dels=0.0;FS=8.302;HRun=0;HaplotypeScore=10.4506;MQ=33.44;MQ0=13;MQRankSum=-1.552;QD=0.64;ReadPosRankSum=-1.709;SNPEFF_AMINO_ACID_CHANGE=T1711M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1093057_1093482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:41,8:49:61.14:61,0,674
11    1093430    .    C    A    144.37    MQFilter40    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DP=46;Dels=0.0;FS=1.643;HRun=1;HaplotypeScore=6.9754;MQ=36.17;MQ0=10;MQRankSum=0.552;QD=3.14;ReadPosRankSum=0.78;SNPEFF_AMINO_ACID_CHANGE=T1717N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1093057_1093482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:38,8:46:99:174,0,742
11    1093452    rs34136803    G    A    47.14    MQFilter40;QDFilter2    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=2.415;DB;DP=29;Dels=0.0;FS=14.548;HRun=1;HaplotypeScore=0.9983;MQ=37.29;MQ0=6;MQRankSum=-2.415;QD=1.63;ReadPosRankSum=-1.575;SNPEFF_AMINO_ACID_CHANGE=P1724;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1093057_1093482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:17,12:29:77.13:77,0,522
11    1093569    rs72842460    A    C    72.05    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.586;DB;DP=47;Dels=0.0;FS=62.021;HRun=1;HaplotypeScore=14.0232;MQ=53.24;MQ0=0;MQRankSum=-3.928;QD=1.53;ReadPosRankSum=1.635;SNPEFF_AMINO_ACID_CHANGE=T1752;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1093516_1093653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:34,13:47:99:102,0,1153
11    1093582    rs55641679    G    C    32.46    HaplotypeScoreFilter13;QDFilter2    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=2.651;DB;DP=53;Dels=0.0;FS=56.389;HRun=2;HaplotypeScore=15.8198;MQ=53.33;MQ0=0;MQRankSum=-4.136;QD=0.61;ReadPosRankSum=0.732;SNPEFF_AMINO_ACID_CHANGE=A1757P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1093516_1093653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:39,14:53:62.45:62,0,1069
11    1093710    rs7944723    C    G    2404.44    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.274;DB;DP=215;Dels=0.0;FS=1.113;HRun=0;HaplotypeScore=4.5155;MQ=59.38;MQ0=0;MQRankSum=-0.858;QD=11.18;ReadPosRankSum=0.03;SNPEFF_AMINO_ACID_CHANGE=P131;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1093318_1093933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333592    GT:AD:DP:GQ:PL    0/1:113,100:215:99:2434,0,3392
11    1093945    rs7934606    T    C    468.58    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.874;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.122;QD=14.64;ReadPosRankSum=-1.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:12,20:32:99:499,0,394
11    1094629    rs11245950    T    C    189.65    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.724;QD=8.25;ReadPosRankSum=-1.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:14,9:23:99:220,0,486
11    1094690    rs10794291    C    T    865.57    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.124;QD=13.52;ReadPosRankSum=0.752;SNPEFF_AMINO_ACID_CHANGE=T1926;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1094665_1094862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441003    GT:AD:DP:GQ:PL    0/1:35,29:64:99:896,0,1111
11    1094753    rs10794292    A    C    988.10    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.014;DB;DP=126;Dels=0.0;FS=1.693;HRun=4;HaplotypeScore=1.445;MQ=59.63;MQ0=0;MQRankSum=-1.595;QD=7.84;ReadPosRankSum=-0.682;SNPEFF_AMINO_ACID_CHANGE=P1947;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1094665_1094862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441003    GT:AD:DP:GQ:PL    0/1:74,52:126:99:1018,0,2195
11    1095082    rs6597999    A    C    671.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=45;Dels=0.0;FS=5.146;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.13;QD=14.92;ReadPosRankSum=-0.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359061    GT:AD:DP:GQ:PL    0/1:22,22:45:99:702,0,549
11    1096494    rs6421972    T    C    1144.22    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=2.881;DB;DP=76;Dels=0.0;FS=6.488;HRun=4;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=2.169;QD=15.06;ReadPosRankSum=0.055;SNPEFF_AMINO_ACID_CHANGE=C2173;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1096325_1096572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441003    GT:AD:DP:GQ:PL    0/1:31,44:76:99:1174,0,931
11    1097975    rs10902090    C    T    280.01    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.036;DB;DP=23;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.9578;MQ=57.97;MQ0=0;MQRankSum=0.32;QD=12.17;ReadPosRankSum=-1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333592    GT:AD:DP:GQ:PL    0/1:11,12:23:99:310,0,260
11    1098637    rs12418069    A    G    238.37    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=24;Dels=0.0;FS=7.025;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.528;QD=9.93;ReadPosRankSum=-1.173;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333592    GT:AD:DP:GQ:PL    0/1:11,12:24:99:268,0,241
11    1098939    rs10794293    T    C    31.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.38;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333592    GT:AD:DP:GQ:PL    0/1:3,2:5:61.89:62,0,74
11    1100905    rs7396585    G    A    190.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=19.05;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333592    GT:AD:DP:GQ:PL    0/1:4,6:10:45.83:221,0,46
11    1101385    rs4077011    G    A    34.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.7;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361558    GT:AD:DP:GQ:PL    0/1:3,3:6:64.17:64,0,108
11    1101416    rs4077012    C    T    174.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=14.54;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361558    GT:AD:DP:GQ:PL    0/1:6,6:12:99:204,0,194
11    1101649    rs7480563    T    C    603.90    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.327;DB;DP=59;Dels=0.0;FS=5.85;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.236;QD=10.24;ReadPosRankSum=-0.829;SNPEFF_AMINO_ACID_CHANGE=P2554;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1101558_1101662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441003    GT:AD:DP:GQ:PL    0/1:32,27:59:99:634,0,1029
11    1155265    rs35396393    G    A    134.76    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=58.2;MQ0=0;MQRankSum=-0.583;QD=10.37;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:7,6:13:99:165,0,211
11    1155289    rs28468624    A    G    131.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=57.66;MQ0=0;MQRankSum=-1.268;QD=13.12;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:5,5:10:99:161,0,173
11    1155419    rs28569104    C    T    112.34    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=14.04;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:3,5:8:99:142,0,107
11    1156646    rs35783651    C    G    817.23    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.826;DB;DP=70;Dels=0.0;FS=3.435;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.828;QD=11.67;ReadPosRankSum=-0.488;SNPEFF_AMINO_ACID_CHANGE=R219G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1156604_1156662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:36,34:70:99:847,0,924
11    1156709    rs34664315    G    A    302.80    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=10.44;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:18,11:29:99:333,0,651
11    1156829    rs34207169    C    T    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
11    1157476    rs28707071    C    G    260.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:294,24,0
11    1158073    rs28691231    T    C    381.49    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.29;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.553;QD=17.34;ReadPosRankSum=-0.848;SNPEFF_AMINO_ACID_CHANGE=C348;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1158024_1158149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:6,16:22:99:411,0,193
11    1159150    rs28542750    A    T    192.62    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=11.33;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:9,8:17:99:223,0,247
11    1159558    rs28633709    G    C    71.68    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.729;QD=7.96;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:5,4:9:99:102,0,177
11    1161201    rs28653550    G    A    216.13    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=16.63;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:6,7:13:99:246,0,139
11    1161315    rs28403537    T    C    898.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=V494A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1161212_1161322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    1/1:0,29:29:75.21:931,75,0
11    1161335    rs28663568    T    G    474.03    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.302;DB;DP=32;Dels=0.0;FS=3.211;HRun=2;HaplotypeScore=0.8941;MQ=58.55;MQ0=0;MQRankSum=0.264;QD=14.81;ReadPosRankSum=1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:15,17:32:99:504,0,404
11    1161713    rs28404876    G    C    356.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:389,30,0
11    1161935    rs34974357    C    A    562.09    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.628;DB;DP=49;Dels=0.0;FS=4.517;HRun=0;HaplotypeScore=4.4011;MQ=58.09;MQ0=0;MQRankSum=-0.117;QD=11.47;ReadPosRankSum=-0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:25,24:49:99:592,0,764
11    1162517    rs72846339    C    T    271.08    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=16;Dels=0.0;FS=13.424;HRun=0;HaplotypeScore=0.734;MQ=55.82;MQ0=0;MQRankSum=-0.184;QD=16.94;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356191    GT:AD:DP:GQ:PL    0/1:6,10:16:99:301,0,106
11    1212780    rs145651018    T    C    200.55    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=2.724;DB;DP=71;Dels=0.0;FS=7.027;HRun=0;HaplotypeScore=96.8868;MQ=27.47;MQ0=0;MQRankSum=-2.438;QD=2.82;ReadPosRankSum=1.424;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:21,50:71:99:231,0,322
11    1212782    .    A    AG    301.63    PASS    AB=0.866;AC=1;AF=0.50;AN=2;BaseQRankSum=0.567;DP=54;FS=1.854;HRun=0;HaplotypeScore=1164.7387;IndelType=I;MQ=27.62;MQ0=0;MQRankSum=-0.384;QD=4.25;ReadPosRankSum=-0.263;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:60,11:54:99:341,0,943
11    1212783    rs146135733    C    CT    78.53    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.78;DB;DP=53;FS=2.526;HRun=0;HaplotypeScore=1306.0296;IndelType=I;MQ=27.6;MQ0=0;MQRankSum=-0.178;QD=1.12;ReadPosRankSum=1.711;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:56,11:53:99:118,0,968
11    1212784    .    C    CA    2276.49    PASS    AC=2;AF=1.00;AN=2;DP=52;FS=0.0;HRun=0;HaplotypeScore=939.3935;IndelType=I;MQ=27.5;MQ0=0;QD=32.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:30,41:52:99:2319,155,0
11    1212788    .    T    C    61.96    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.93;DP=73;Dels=0.0;FS=14.227;HRun=0;HaplotypeScore=83.5584;MQ=27.18;MQ0=0;MQRankSum=-3.518;QD=0.85;ReadPosRankSum=2.965;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:33,37:73:91.95:92,0,416
11    1212789    .    G    A    64.98    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.542;DP=76;Dels=0.0;FS=12.03;HRun=1;HaplotypeScore=84.2923;MQ=26.7;MQ0=0;MQRankSum=-2.835;QD=0.85;ReadPosRankSum=3.698;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:36,40:76:94.97:95,0,384
11    1212825    .    C    T    397.75    HaplotypeScoreFilter13;MQFilter40    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=1.429;DP=169;Dels=0.0;FS=8.603;HRun=0;HaplotypeScore=33.2467;MQ=28.05;MQ0=2;MQRankSum=2.029;QD=2.35;ReadPosRankSum=-4.087;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:127,41:169:99:428,0,1759
11    1212847    .    C    T    168.86    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.853;DP=234;DS;Dels=0.0;FS=10.26;HRun=1;HaplotypeScore=124.8187;MQ=31.54;MQ0=2;MQRankSum=0.614;QD=0.72;ReadPosRankSum=-1.105;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:202,26:234:99:199,0,3137
11    1212858    rs74811639    C    A    459.58    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.41;DB;DP=232;DS;Dels=0.02;FS=2.767;HRun=1;HaplotypeScore=115.6398;MQ=31.97;MQ0=4;MQRankSum=-0.736;QD=1.95;ReadPosRankSum=4.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:169,63:232:99:490,0,3147
11    1212870    rs79862170    C    T    1109.51    HaplotypeScoreFilter13;MQFilter40    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=2.189;DB;DP=224;DS;Dels=0.02;FS=8.165;HRun=1;HaplotypeScore=194.6329;MQ=34.19;MQ0=3;MQRankSum=-0.062;QD=4.87;ReadPosRankSum=-2.287;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:124,88:224:99:1140,0,2199
11    1212877    rs77623982    A    G    2078.83    HaplotypeScoreFilter13;MQFilter40    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.087;DB;DP=238;DS;Dels=0.01;FS=3.931;HRun=0;HaplotypeScore=202.4164;MQ=34.14;MQ0=3;MQRankSum=4.173;QD=8.63;ReadPosRankSum=2.709;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:120,118:238:99:2109,0,2168
11    1212902    .    C    G    337.65    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.038;DP=238;DS;Dels=0.0;FS=17.732;HRun=0;HaplotypeScore=37.3945;MQ=36.3;MQ0=3;MQRankSum=0.107;QD=1.42;ReadPosRankSum=-1.828;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:189,44:238:99:368,0,3683
11    1212938    rs34200684    C    T    227.89    HaplotypeScoreFilter13;QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.147;DB;DP=157;DS;Dels=0.0;FS=16.333;HRun=1;HaplotypeScore=50.136;MQ=40.16;MQ0=2;MQRankSum=1.905;QD=1.45;ReadPosRankSum=0.191;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:137,20:157:99:258,0,2889
11    1212954    rs35216491    C    A    1129.60    HaplotypeScoreFilter13    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.912;DB;DP=141;DS;Dels=0.0;FS=5.331;HRun=1;HaplotypeScore=49.1714;MQ=41.51;MQ0=1;MQRankSum=-0.464;QD=8.01;ReadPosRankSum=1.955;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:74,67:141:99:1160,0,1475
11    1213023    .    G    C    711.70    HaplotypeScoreFilter13    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.889;DP=182;Dels=0.0;FS=9.345;HRun=1;HaplotypeScore=33.9056;MQ=46.1;MQ0=6;MQRankSum=-7.661;QD=3.91;ReadPosRankSum=-5.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:105,61:182:99:742,0,2829
11    1213047    rs76705130    T    C    334.32    HaplotypeScoreFilter13;QDFilter2    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.097;DB;DP=225;Dels=0.0;FS=47.563;HRun=1;HaplotypeScore=105.6579;MQ=44.37;MQ0=8;MQRankSum=-8.804;QD=1.49;ReadPosRankSum=-1.399;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:143,75:225:99:364,0,4137
11    1213063    .    CCTGGAACTACTCCCAG    C    358.61    QDFilter2    AB=0.973;AC=1;AF=0.50;AN=2;BaseQRankSum=6.241;DP=204;DS;FS=24.86;HRun=0;HaplotypeScore=4409.5152;IndelType=D;MQ=42.61;MQ0=10;MQRankSum=-4.787;QD=1.43;ReadPosRankSum=3.135;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:243,6:204:99:398,0,37252
11    1213115    rs113511365    C    T    40.70    HaplotypeScoreFilter13;QDFilter2    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.782;DB;DP=221;DS;Dels=0.0;FS=8.025;HRun=0;HaplotypeScore=143.4342;MQ=44.75;MQ0=4;MQRankSum=-1.777;QD=0.18;ReadPosRankSum=-0.181;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:195,25:221:70.69:71,0,4528
11    1213125    rs78716500    G    A    1240.09    HaplotypeScoreFilter13    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=5.755;DB;DP=209;DS;Dels=0.0;FS=34.022;HRun=1;HaplotypeScore=95.6374;MQ=47.59;MQ0=3;MQRankSum=-8.954;QD=5.93;ReadPosRankSum=-1.675;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:117,90:209:99:1270,0,2989
11    1213155    rs77137100    C    T    259.38    HaplotypeScoreFilter13;QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=193;DS;Dels=0.0;FS=15.49;HRun=0;HaplotypeScore=32.2143;MQ=52.6;MQ0=1;MQRankSum=-6.447;QD=1.34;ReadPosRankSum=-3.396;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:155,38:193:99:289,0,4861
11    1213174    rs74046245    A    G    776.79    FSFilter60;HaplotypeScoreFilter13    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=1.385;DB;DP=213;DS;Dels=0.0;FS=61.181;HRun=0;HaplotypeScore=30.376;MQ=52.63;MQ0=1;MQRankSum=-9.261;QD=3.65;ReadPosRankSum=0.382;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:160,47:213:99:807,0,4628
11    1213177    rs74046246    C    T    839.03    HaplotypeScoreFilter13    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=216;DS;Dels=0.0;FS=33.558;HRun=0;HaplotypeScore=34.3989;MQ=52.79;MQ0=0;MQRankSum=-10.994;QD=3.88;ReadPosRankSum=-0.411;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:155,61:216:99:869,0,5124
11    1213204    rs72479396    C    G    1310.64    FSFilter60;HaplotypeScoreFilter13    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.982;DB;DP=250;DS;Dels=0.0;FS=117.696;HRun=0;HaplotypeScore=41.4367;MQ=52.76;MQ0=0;MQRankSum=-12.23;QD=5.24;ReadPosRankSum=1.846;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:180,70:250:99:1341,0,5720
11    1213245    rs67624660    T    A    1091.78    FSFilter60    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=3.313;DB;DP=245;DS;Dels=0.0;FS=107.435;HRun=0;HaplotypeScore=8.0702;MQ=51.38;MQ0=0;MQRankSum=-12.38;QD=4.46;ReadPosRankSum=-2.082;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:167,77:245:99:1122,0,5239
11    1213257    rs76779582    T    C    772.27    FSFilter60;SnpCluster    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.909;DB;DP=232;DS;Dels=0.0;FS=72.255;HRun=2;HaplotypeScore=11.7481;MQ=50.93;MQ0=0;MQRankSum=-12.068;QD=3.33;ReadPosRankSum=-3.353;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:156,76:232:99:802,0,5025
11    1213259    rs75991767    T    G    748.05    FSFilter60;SnpCluster    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.026;DB;DP=229;DS;Dels=0.0;FS=74.954;HRun=1;HaplotypeScore=11.7481;MQ=51.08;MQ0=0;MQRankSum=-11.863;QD=3.27;ReadPosRankSum=-3.308;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:155,73:229:99:778,0,5037
11    1213264    rs72846341    G    A    969.94    HaplotypeScoreFilter13;MQRankSumFilter12_5;SnpCluster    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.291;DB;DP=240;DS;Dels=0.0;FS=56.985;HRun=0;HaplotypeScore=30.5348;MQ=50.51;MQ0=0;MQRankSum=-12.575;QD=4.04;ReadPosRankSum=-3.842;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:157,83:240:99:1000,0,4810
11    1213272    rs78252457    A    C    348.21    HaplotypeScoreFilter13;QDFilter2    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=1.515;DB;DP=246;DS;Dels=0.0;FS=13.437;HRun=1;HaplotypeScore=40.4396;MQ=50.41;MQ0=0;MQRankSum=-10.683;QD=1.42;ReadPosRankSum=-2.269;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:185,61:246:99:378,0,5673
11    1213281    rs75618268    C    T    920.24    HaplotypeScoreFilter13    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=3.898;DB;DP=233;DS;Dels=0.0;FS=1.307;HRun=2;HaplotypeScore=36.6225;MQ=49.8;MQ0=0;MQRankSum=-10.493;QD=3.95;ReadPosRankSum=-2.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:168,65:233:99:950,0,4679
11    1213293    rs77207494    C    T    402.90    HaplotypeScoreFilter13;QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.429;DB;DP=215;DS;Dels=0.0;FS=14.461;HRun=2;HaplotypeScore=53.3898;MQ=48.98;MQ0=0;MQRankSum=-8.739;QD=1.87;ReadPosRankSum=-1.981;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:168,47:215:99:433,0,5056
11    1213311    rs80058880    C    T    245    HaplotypeScoreFilter13;QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=4.963;DB;DP=218;DS;Dels=0.0;FS=17.833;HRun=0;HaplotypeScore=78.374;MQ=48.91;MQ0=0;MQRankSum=-6.654;QD=1.12;ReadPosRankSum=0.348;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:175,34:218:99:275,0,4816
11    1213314    rs73395695    C    T    1143.67    HaplotypeScoreFilter13    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=5.305;DB;DP=226;DS;Dels=0.0;FS=15.69;HRun=0;HaplotypeScore=64.612;MQ=48.62;MQ0=0;MQRankSum=-8.237;QD=5.06;ReadPosRankSum=-0.556;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:155,71:226:99:1174,0,4445
11    1213405    rs67262263    G    A    1222.22    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.497;DB;DP=171;Dels=0.0;FS=12.851;HRun=1;HaplotypeScore=2.6665;MQ=46.21;MQ0=0;MQRankSum=-4.396;QD=7.15;ReadPosRankSum=-0.108;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:108,63:171:99:1252,0,3048
11    1213416    rs78511643    G    A    592.59    HaplotypeScoreFilter13    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=3.358;DB;DP=147;Dels=0.0;FS=11.098;HRun=0;HaplotypeScore=36.5724;MQ=46.42;MQ0=0;MQRankSum=-2.84;QD=4.03;ReadPosRankSum=-0.384;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:110,37:147:99:623,0,3133
11    1213424    rs61867531    A    G    2152.81    HaplotypeScoreFilter13    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.476;DB;DP=135;Dels=0.0;FS=3.613;HRun=0;HaplotypeScore=30.7126;MQ=46.4;MQ0=0;MQRankSum=-6.505;QD=15.95;ReadPosRankSum=-1.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:41,94:135:99:2183,0,1248
11    1213428    rs61867532    T    C    2256.87    PASS    AB=0.312;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.774;DB;DP=138;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=1.8519;MQ=46.31;MQ0=0;MQRankSum=-6.684;QD=16.35;ReadPosRankSum=0.092;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:43,95:138:99:2287,0,1254
11    1213440    rs61867533    T    C    2320.75    PASS    AB=0.293;AC=1;AF=0.50;AN=2;BaseQRankSum=3.756;DB;DP=141;Dels=0.0;FS=7.466;HRun=1;HaplotypeScore=4.1739;MQ=46.24;MQ0=0;MQRankSum=-5.344;QD=16.46;ReadPosRankSum=0.754;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:41,99:141:99:2351,0,1043
11    1213461    rs61867534    T    G    1322.39    HaplotypeScoreFilter13    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=4.016;DB;DP=160;Dels=0.0;FS=5.931;HRun=1;HaplotypeScore=42.3995;MQ=48.54;MQ0=0;MQRankSum=-3.787;QD=8.26;ReadPosRankSum=1.229;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:67,56:160:99:1352,0,1929
11    1213481    .    G    A    795.88    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.918;DP=165;Dels=0.0;FS=10.772;HRun=0;HaplotypeScore=0.9997;MQ=48.06;MQ0=0;MQRankSum=-2.983;QD=4.82;ReadPosRankSum=-1.728;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:125,40:165:99:826,0,3576
11    1213533    rs73395699    C    T    1932.49    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.277;DB;DP=142;Dels=0.0;FS=29.26;HRun=0;HaplotypeScore=6.8348;MQ=48.07;MQ0=0;MQRankSum=-8.086;QD=13.61;ReadPosRankSum=-0.103;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:63,79:142:99:1962,0,1697
11    1213556    rs74046249    G    A    472.20    HaplotypeScoreFilter13    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=126;Dels=0.0;FS=35.522;HRun=1;HaplotypeScore=27.3717;MQ=49.87;MQ0=0;MQRankSum=-7.156;QD=3.75;ReadPosRankSum=-1.709;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:90,36:126:99:502,0,2876
11    1213566    rs72846342    G    C    449.04    HaplotypeScoreFilter13    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=118;Dels=0.0;FS=51.58;HRun=3;HaplotypeScore=24.7967;MQ=51.43;MQ0=0;MQRankSum=-8.274;QD=3.81;ReadPosRankSum=-6.741;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:77,41:118:99:479,0,2281
11    1213804    rs77998608    T    C    1558.94    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.012;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=58.95;MQ0=0;MQRankSum=1.72;QD=14.17;ReadPosRankSum=0.968;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:52,58:110:99:1589,0,1659
11    1213806    rs28653192    T    C    1639.54    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=104;Dels=0.0;FS=3.261;HRun=2;HaplotypeScore=1.7333;MQ=58.88;MQ0=0;MQRankSum=-0.163;QD=15.76;ReadPosRankSum=-0.242;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:46,58:104:99:1670,0,1532
11    1214924    rs2075841    C    T    55.71    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=13;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.7887;MQ=56.35;MQ0=0;MQRankSum=0.817;QD=4.29;ReadPosRankSum=0.978;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:8,5:13:85.71:86,0,238
11    1215056    rs2075842    G    C    33.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
11    1215271    rs78469149    GA    G    366.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=28.1062;IndelType=D;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:409,33,0
11    1215580    rs1132433    A    G    225.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=25.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:258,21,0
11    1215698    rs28452143    A    G    979.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=29.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,33:33:84.22:1012,84,0
11    1216316    rs58550179    G    GC    497.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=96.452;IndelType=I;MQ=31.79;MQ0=0;QD=38.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:540,36,0
11    1216333    rs60138698    TA    T    497.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=103.7547;IndelType=D;MQ=34.58;MQ0=0;QD=35.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:1,13:14:39.13:540,39,0
11    1217084    rs28652890    T    C    859.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=27.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,31:31:69.21:893,69,0
11    1217228    rs28592983    T    C    801.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.56;MQ0=0;QD=29.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:835,69,0
11    1218128    rs28503875    G    A    300.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:334,24,0
11    1218613    rs28668687    A    G    76.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
11    1219094    rs35700114    A    G    44.33    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.08;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:1,3:4:27.95:74,0,28
11    1219118    rs28742281    T    C    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:71,6,0
11    1219151    rs35915689    C    G    32.68    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.54;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:3,2:5:62.67:63,0,74
11    1219632    rs2075843    G    A    58.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.731;QD=9.68;ReadPosRankSum=-0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:2,4:6:24.10:88,0,24
11    1220171    rs34831688    C    T    552.63    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=0.525;DB;DP=24;Dels=0.0;FS=2.126;HRun=0;HaplotypeScore=0.9665;MQ=57.05;MQ0=0;MQRankSum=0.175;QD=23.03;ReadPosRankSum=1.365;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:6,17:24:99:583,0,131
11    1220462    rs35288961    G    T    61.21    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.12;ReadPosRankSum=1.818;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:7,3:10:91.20:91,0,257
11    1220599    rs28633254    T    C    368.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:402,30,0
11    1220760    rs28514396    T    C    81.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
11    1220796    rs28502687    T    C    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
11    1221038    rs28439383    C    T    106.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.32;ReadPosRankSum=0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,143
11    1221264    rs35968147    T    C    80.20    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=11.46;ReadPosRankSum=1.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:3,4:7:99:110,0,102
11    1221305    rs2075844    A    G    137.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:170,12,0
11    1221985    rs3087562    C    T    333.36    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.153;DB;DP=29;Dels=0.0;FS=6.551;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=11.5;ReadPosRankSum=0.327;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5AC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358378    GT:AD:DP:GQ:PL    0/1:15,14:29:99:363,0,380
11    1248197    rs908224    G    T    61.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=12.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:94,9,0
11    1248491    rs908223    T    G    806.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:839,66,0
11    1250384    rs2471912    A    G    130.95    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=10.91;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    0/1:5,7:12:99:161,0,175
11    1250488    rs2075859    C    T    83.78    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.436;QD=3.99;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=C355;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1250400_1250528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    0/1:16,5:21:99:114,0,454
11    1250603    rs2075860    G    C    31.35    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.067;QD=3.92;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    0/1:6,2:8:61.34:61,0,181
11    1252047    rs2672807    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531082    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    1252708    rs2735709    G    C    266.31    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.261;DB;DP=36;Dels=0.0;FS=5.339;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.081;QD=7.4;ReadPosRankSum=-0.892;SNPEFF_AMINO_ACID_CHANGE=L532;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1252653_1252790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:22,14:36:99:296,0,669
11    1253401    rs12421917    C    G    323.39    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.211;DB;DP=36;Dels=0.0;FS=3.27;HRun=1;HaplotypeScore=3.9977;MQ=58.96;MQ0=0;MQRankSum=1.103;QD=8.98;ReadPosRankSum=0.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531082    GT:AD:DP:GQ:PL    0/1:19,16:36:99:353,0,523
11    1253856    rs1318321    T    C    205.32    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.191;DB;DP=20;Dels=0.0;FS=5.614;HRun=0;HaplotypeScore=3.7869;MQ=56.2;MQ0=0;MQRankSum=-0.988;QD=10.27;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531082    GT:AD:DP:GQ:PL    0/1:11,9:20:99:235,0,315
11    1253942    rs908229    T    C    150.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.236;MQ=50.62;MQ0=0;MQRankSum=-1.589;QD=18.87;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Y669;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1253874_1254000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:2,6:8:55.76:181,0,56
11    1254038    rs11026355    G    A    37.46    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=9.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531082    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:67,0,32
11    1254599    rs2672806    T    C    32.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.79;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531082    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:62,0,27
11    1254940    rs2735719    G    A    139.42    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.9916;MQ=57.39;MQ0=0;MQRankSum=-0.876;QD=15.49;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531082    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,110
11    1255773    rs7116614    C    T    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=C831;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1255759_1255910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
11    1257867    rs2672803    T    C    285.52    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.813;QD=17.85;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    0/1:6,10:16:99:316,0,200
11    1258240    rs77287508    C    T    44.82    QDFilter2    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.167;DB;DP=25;Dels=0.0;FS=2.605;HRun=0;HaplotypeScore=0.0;MQ=52.55;MQ0=0;MQRankSum=-3.1;QD=1.79;ReadPosRankSum=-2.1;SNPEFF_AMINO_ACID_CHANGE=A1048V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1258155_1258394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:18,7:25:74.82:75,0,555
11    1258241    rs79773885    A    G    47.82    QDFilter2    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.367;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.55;MQ0=0;MQRankSum=-3.1;QD=1.91;ReadPosRankSum=-2.1;SNPEFF_AMINO_ACID_CHANGE=A1048;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1258155_1258394;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:18,7:25:77.81:78,0,542
11    1258283    rs78669250    G    A    150.40    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.837;DB;DP=28;Dels=0.0;FS=7.65;HRun=0;HaplotypeScore=0.9159;MQ=51.52;MQ0=0;MQRankSum=-2.736;QD=5.37;ReadPosRankSum=-0.025;SNPEFF_AMINO_ACID_CHANGE=P1062;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1258155_1258394;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:17,10:28:99:180,0,425
11    1258286    rs77996005    C    T    168.05    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=3.099;DB;DP=30;Dels=0.0;FS=3.769;HRun=0;HaplotypeScore=0.9159;MQ=51.41;MQ0=0;MQRankSum=-3.443;QD=5.6;ReadPosRankSum=0.129;SNPEFF_AMINO_ACID_CHANGE=D1063;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1258155_1258394;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:19,11:30:99:198,0,491
11    1258295    rs79118814    A    G    234.71    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=51.71;MQ0=0;MQRankSum=-3.445;QD=6.9;ReadPosRankSum=0.681;SNPEFF_AMINO_ACID_CHANGE=A1066;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1258155_1258394;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:21,12:34:99:265,0,534
11    1261640    rs2735733    C    T    678.41    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=3.866;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=17.4;ReadPosRankSum=0.949;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525715    GT:AD:DP:GQ:PL    0/1:17,22:39:99:708,0,431
11    1263687    rs55933911    C    T    884.71    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.795;DB;DP=62;Dels=0.0;FS=5.344;HRun=0;HaplotypeScore=1.8939;MQ=59.7;MQ0=0;MQRankSum=-0.211;QD=14.27;ReadPosRankSum=-0.995;SNPEFF_AMINO_ACID_CHANGE=N1859;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1262081_1272973;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:34,28:62:99:915,0,1107
11    1264362    rs11605113    A    G    406.76    MQFilter40    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=0.064;DB;DP=78;Dels=0.0;FS=1.795;HRun=0;HaplotypeScore=0.9867;MQ=21.45;MQ0=24;MQRankSum=-1.514;QD=5.21;ReadPosRankSum=0.945;SNPEFF_AMINO_ACID_CHANGE=T2084;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1262081_1272973;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:47,31:78:99:437,0,482
11    1264691    rs2943502    T    C    335.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.97;MQ0=5;QD=16.78;SNPEFF_AMINO_ACID_CHANGE=M2194T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1262081_1272973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    1/1:0,20:20:33.08:369,33,0
11    1264742    rs137973688    G    C    257.68    MQFilter40    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=4.793;DB;DP=47;Dels=0.0;FS=5.666;HRun=1;HaplotypeScore=0.0;MQ=28.6;MQ0=7;MQRankSum=-0.867;QD=5.48;ReadPosRankSum=-0.198;SNPEFF_AMINO_ACID_CHANGE=R2211P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1262081_1272973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:32,15:47:99:288,0,600
11    1264823    rs4963031    T    C    2767.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.399;MQ=41.74;MQ0=6;QD=26.35;SNPEFF_AMINO_ACID_CHANGE=L2238P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1262081_1272973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    1/1:0,104:105:99:2800,223,0
11    1264965    rs4963051    G    A    1126.14    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.986;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5779;MQ=47.0;MQ0=0;MQRankSum=-1.688;QD=13.57;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=T2285;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1262081_1272973;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:41,42:83:99:1156,0,1203
11    1265422    .    G    A    748.29    MQFilter40    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.522;DP=181;Dels=0.0;FS=9.634;HRun=1;HaplotypeScore=1.7552;MQ=22.26;MQ0=60;MQRankSum=-3.431;QD=4.13;ReadPosRankSum=3.262;SNPEFF_AMINO_ACID_CHANGE=E2438K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1262081_1272973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529681    GT:AD:DP:GQ:PL    0/1:99,81:181:99:778,0,1692
11    1265786    .    C    T    1431.40    MQFilter40    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.982;DP=235;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.7939;MQ=25.5;MQ0=45;MQRankSum=0.862;QD=6.09;ReadPosRankSum=-0.638;SNPEFF_AMINO_ACID_CHANGE=R103W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1265744_1265866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537836    GT:AD:DP:GQ:PL    0/1:138,96:235:99:1461,0,1564
11    1266599    rs139960671    C    T    1496.72    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.1;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=39.68;MQ0=5;MQRankSum=3.088;QD=14.12;ReadPosRankSum=0.413;SNPEFF_AMINO_ACID_CHANGE=P2790L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1266329_1268263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:45,60:106:99:1527,0,978
11    1267325    rs55813014    T    C    1082.18    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=2.401;DB;DP=200;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.6114;MQ=48.4;MQ0=1;MQRankSum=-11.343;QD=5.41;ReadPosRankSum=-1.874;SNPEFF_AMINO_ACID_CHANGE=F3032S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1266329_1268263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:120,79:200:99:1112,0,3428
11    1267562    rs60268710    C    T    1723.78    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.92;DB;DP=170;Dels=0.0;FS=4.12;HRun=0;HaplotypeScore=3.8983;MQ=43.9;MQ0=6;MQRankSum=-1.31;QD=10.14;ReadPosRankSum=-0.882;SNPEFF_AMINO_ACID_CHANGE=T3111M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1266329_1268263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:91,79:170:99:1754,0,1970
11    1267917    rs3021163    T    C    680.22    MQFilter40    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=150;Dels=0.0;FS=39.571;HRun=1;HaplotypeScore=2.5194;MQ=35.81;MQ0=13;MQRankSum=-2.716;QD=4.53;ReadPosRankSum=-1.146;SNPEFF_AMINO_ACID_CHANGE=S154;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1267849_1267980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538459    GT:AD:DP:GQ:PL    0/1:92,58:150:99:710,0,1704
11    1267960    rs2943531    A    G    2384    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DB;DP=161;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.7075;MQ=25.66;MQ0=58;MQRankSum=-0.625;QD=14.81;ReadPosRankSum=1.482;SNPEFF_AMINO_ACID_CHANGE=T169A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1267849_1267980;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538459    GT:AD:DP:GQ:PL    1/1:1,160:161:99:2417,216,0
11    1268064    .    C    T    214.24    MQFilter40;QDFilter2    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DP=135;Dels=0.0;FS=11.522;HRun=0;HaplotypeScore=0.9933;MQ=16.46;MQ0=95;MQRankSum=0.407;QD=1.59;ReadPosRankSum=-2.065;SNPEFF_AMINO_ACID_CHANGE=H201Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1268058_1268168;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538459    GT:AD:DP:GQ:PL    0/1:78,57:135:99:244,0,458
11    1268513    rs2943529    G    C    1616.18    MQFilter40    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=6.454;DB;DP=143;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5226;MQ=39.96;MQ0=15;MQRankSum=1.553;QD=11.3;ReadPosRankSum=0.481;SNPEFF_AMINO_ACID_CHANGE=R3373P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1268429_1269934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:69,74:143:99:1646,0,1290
11    1268608    rs2943527    A    G    2534.19    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.891;DB;DP=136;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.2607;MQ=25.16;MQ0=32;MQRankSum=1.059;QD=18.63;ReadPosRankSum=1.329;SNPEFF_AMINO_ACID_CHANGE=S3405G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1268429_1269934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    1/1:1,135:136:99:2567,235,0
11    1268682    rs112219279    T    C    1102.08    MQFilter40    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=2.254;DB;DP=100;Dels=0.0;FS=1.904;HRun=2;HaplotypeScore=5.8082;MQ=39.21;MQ0=7;MQRankSum=-0.785;QD=11.02;ReadPosRankSum=1.419;SNPEFF_AMINO_ACID_CHANGE=S3429;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1268429_1269934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:49,50:100:99:1132,0,983
11    1269398    rs148995598    C    T    54.56    MQFilter40;QDFilter2    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=150;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=8.51;MQ0=133;MQRankSum=-1.025;QD=0.36;ReadPosRankSum=1.317;SNPEFF_AMINO_ACID_CHANGE=T3668I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1268429_1269934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:113,37:150:84.55:85,0,223
11    1269627    rs4963056    C    T    1723.87    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.139;DB;DP=204;Dels=0.0;FS=4.416;HRun=0;HaplotypeScore=5.7872;MQ=43.95;MQ0=16;MQRankSum=-4.518;QD=8.45;ReadPosRankSum=0.739;SNPEFF_AMINO_ACID_CHANGE=T3744;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1268429_1269934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:113,90:204:99:1754,0,2918
11    1269672    rs4963057    T    C    1202.51    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.393;DB;DP=176;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=44.52;MQ0=19;MQRankSum=-9.401;QD=6.83;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=S3759;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1268429_1269934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:92,84:176:99:1232,0,2643
11    1269835    rs2943521    G    A    779.89    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.557;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.14;MQ0=1;MQRankSum=-5.55;QD=12.58;ReadPosRankSum=0.659;SNPEFF_AMINO_ACID_CHANGE=V3814I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1268429_1269934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:28,34:62:99:810,0,753
11    1271321    rs2943517    C    G    2039.24    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.899;DB;DP=220;Dels=0.0;FS=6.427;HRun=1;HaplotypeScore=1.9774;MQ=45.16;MQ0=5;MQRankSum=-1.762;QD=9.27;ReadPosRankSum=0.635;SNPEFF_AMINO_ACID_CHANGE=A183G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1270861_1271655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535652    GT:AD:DP:GQ:PL    0/1:120,100:220:99:2069,0,3081
11    1271429    rs2943516    C    T    1982.56    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=5.624;DB;DP=195;DS;Dels=0.0;FS=6.978;HRun=0;HaplotypeScore=5.4125;MQ=42.38;MQ0=9;MQRankSum=2.493;QD=10.17;ReadPosRankSum=-0.315;SNPEFF_AMINO_ACID_CHANGE=P219L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1270861_1271655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535652    GT:AD:DP:GQ:PL    0/1:109,86:195:99:2013,0,2288
11    1271508    rs12418291    G    A    990.67    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=3.425;DB;DP=159;Dels=0.0;FS=1.975;HRun=0;HaplotypeScore=2.5388;MQ=22.76;MQ0=46;MQRankSum=-0.067;QD=6.23;ReadPosRankSum=1.493;SNPEFF_AMINO_ACID_CHANGE=T245;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1270861_1271655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535652    GT:AD:DP:GQ:PL    0/1:97,62:159:99:1021,0,1028
11    1272226    rs2943512    A    C    909.44    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=0.924;DB;DP=55;Dels=0.0;FS=8.377;HRun=4;HaplotypeScore=2.3102;MQ=55.03;MQ0=0;MQRankSum=0.748;QD=16.54;ReadPosRankSum=-1.452;SNPEFF_AMINO_ACID_CHANGE=T4650P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1269346_1272973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    0/1:23,32:55:99:939,0,674
11    1272858    rs4963059    C    T    386.18    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DB;DP=44;Dels=0.0;FS=2.807;HRun=2;HaplotypeScore=1.933;MQ=59.48;MQ0=0;MQRankSum=-0.378;QD=8.78;ReadPosRankSum=0.182;SNPEFF_AMINO_ACID_CHANGE=F4615;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1272412_1272973;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406844    GT:AD:DP:GQ:PL    0/1:31,13:44:99:416,0,769
11    1273833    rs2249073    T    C    110.54    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=18.42;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535652    GT:AD:DP:GQ:PL    0/1:1,5:6:22.75:141,0,23
11    1279486    rs2249550    A    G    252.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=16;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=15.77;ReadPosRankSum=-1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    0/1:6,10:16:99:282,0,169
11    1281134    rs2857476    T    C    1995.42    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.2696;MQ=59.82;MQ0=0;MQRankSum=0.172;QD=15.59;ReadPosRankSum=0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    0/1:60,68:128:99:2025,0,1823
11    1284227    rs12417955    A    G    31.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=4.47;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349637    GT:AD:DP:GQ:PL    0/1:4,3:7:61.26:61,0,148
11    1309956    rs3750920    C    T    301.04    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.142;DB;DP=31;Dels=0.0;FS=1.402;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.426;QD=9.71;ReadPosRankSum=0.385;SNPEFF_AMINO_ACID_CHANGE=P111;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1309854_1310006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOLLIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263646    GT:AD:DP:GQ:PL    0/1:19,12:31:99:331,0,624
11    1432691    rs61868960    T    C    396.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_AMINO_ACID_CHANGE=C19;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1432382_1432863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382179    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:430,33,0
11    1464903    rs139268615    CG    C    137.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=7;HaplotypeScore=27.5893;IndelType=D;MQ=60.38;MQ0=0;QD=17.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524702    GT:AD:DP:GQ:PL    1/1:1,7:8:18.04:180,18,0
11    1471154    rs11028332    C    T    469.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531078    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:503,39,0
11    1472050    rs61869028    A    G    86.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308219    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    1472475    rs36031025    TG    T    692.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=7;HaplotypeScore=70.7177;IndelType=D;MQ=59.95;MQ0=0;QD=27.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308219    GT:AD:DP:GQ:PL    1/1:1,24:25:72.16:735,72,0
11    1475706    rs55744154    A    G    358.22    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.822;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.57;MQ0=0;MQRankSum=0.952;QD=12.35;ReadPosRankSum=1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308219    GT:AD:DP:GQ:PL    0/1:12,15:29:99:388,0,352
11    1477797    rs61869032    C    T    211.34    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=23.48;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308219    GT:AD:DP:GQ:PL    0/1:1,8:9:9.37:241,0,9
11    1480502    .    A    C    30.41    MQFilter40;QDFilter2    AB=0.189;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.757;DP=54;Dels=0.0;FS=20.743;HRun=2;HaplotypeScore=0.9665;MQ=37.46;MQ0=0;MQRankSum=-2.688;QD=0.56;ReadPosRankSum=2.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526678    GT:AD:DP:GQ:PL    0/1:10,43:54:60.40:60,0,283
11    1481610    rs28555282    T    C    97.95    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=1.92;QD=12.24;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526678    GT:AD:DP:GQ:PL    0/1:3,5:8:86.45:128,0,86
11    1481690    rs35316463    CCTTT    C    176.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=79.7283;IndelType=D;MQ=54.39;MQ0=0;MQRankSum=0.762;QD=19.64;ReadPosRankSum=-1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526678    GT:AD:DP:GQ:PL    0/1:3,6:9:99:216,0,132
11    1481930    rs4963048    A    G    38.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.05;SNPEFF_AMINO_ACID_CHANGE=T730A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1481730_1482944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528841    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
11    1492445    rs4881724    A    G    666.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC091196.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526698    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:699,54,0
11    1501670    rs10742185    G    C    1365.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_AMINO_ACID_CHANGE=S106;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1501623_1501716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC091196.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329957    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1399,111,0
11    1502097    rs10767696    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_AMINO_ACID_CHANGE=P43;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1501955_1502115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC091196.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329957    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    1508955    rs7126339    T    C    35.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=17.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC091196.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526462    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
11    1508959    rs11030437    G    A    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC091196.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526462    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
11    1509007    rs2334555    T    C    31.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC091196.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526462    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
11    1509143    rs1105871    T    C    403.73    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.59;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.19;MQ0=0;MQRankSum=1.59;QD=13.46;ReadPosRankSum=1.897;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC091196.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526462    GT:AD:DP:GQ:PL    0/1:15,14:29:99:434,0,404
11    1509238    rs2334554    T    C    1589.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=58.27;MQ0=0;QD=29.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC091196.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526462    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1623,126,0
11    1576235    rs6578504    T    C    78.31    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.58;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528778    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:108,0,28
11    1576283    rs11603496    G    A    113.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=14.16;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528778    GT:AD:DP:GQ:PL    0/1:4,4:8:95.02:143,0,95
11    1605904    rs113408385    T    G    118.69    HaplotypeScoreFilter13    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.295;DB;DP=53;Dels=0.0;FS=25.519;HRun=0;HaplotypeScore=13.4823;MQ=44.4;MQ0=0;MQRankSum=-2.882;QD=2.24;ReadPosRankSum=-1.824;SNPEFF_AMINO_ACID_CHANGE=G192;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1605572_1606513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382171    GT:AD:DP:GQ:PL    0/1:35,12:53:99:149,0,803
11    1606129    rs76191756    A    C    192.31    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=2.596;DB;DP=67;Dels=0.0;FS=1.431;HRun=3;HaplotypeScore=8.4793;MQ=47.51;MQ0=0;MQRankSum=-2.648;QD=2.87;ReadPosRankSum=-1.278;SNPEFF_AMINO_ACID_CHANGE=G117;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1605572_1606513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382171    GT:AD:DP:GQ:PL    0/1:40,26:67:99:222,0,670
11    1619172    .    ACCCCCACAGGAGCCACAGCCCCCCTTGGAG    A    866.48    PASS    AB=0.861;AC=1;AF=0.50;AN=2;BaseQRankSum=5.734;DP=118;FS=2.544;HRun=0;HaplotypeScore=2538.5705;IndelType=D;MQ=58.35;MQ0=0;MQRankSum=3.256;QD=7.34;ReadPosRankSum=0.86;SNPEFF_AMINO_ACID_CHANGE=GSKGGCGSCGG93G;SNPEFF_CODON_CHANGE=ggctccaaggggggctgtggctcctgtgggggt/ggt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_11_1618409_1619524;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412090    GT:AD:DP:GQ:PL    0/1:99,19:118:99:906,0,6711
11    1628844    rs1989592    A    G    1311.22    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.569;DB;DP=97;Dels=0.0;FS=6.32;HRun=0;HaplotypeScore=0.5784;MQ=59.57;MQ0=0;MQRankSum=-0.576;QD=13.52;ReadPosRankSum=1.351;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399685    GT:AD:DP:GQ:PL    0/1:53,44:97:99:1341,0,1735
11    1628965    rs57186801    G    A    2152.15    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=164;Dels=0.0;FS=2.841;HRun=1;HaplotypeScore=2.7246;MQ=59.17;MQ0=0;MQRankSum=2.103;QD=13.12;ReadPosRankSum=2.005;SNPEFF_AMINO_ACID_CHANGE=S217;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1628795_1629693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399685    GT:AD:DP:GQ:PL    0/1:87,77:164:99:2182,0,2632
11    1628992    rs60210378    G    A    2302.45    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=173;Dels=0.01;FS=5.666;HRun=1;HaplotypeScore=2.7545;MQ=58.96;MQ0=0;MQRankSum=-0.78;QD=13.16;ReadPosRankSum=-0.541;SNPEFF_AMINO_ACID_CHANGE=G208;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1628795_1629693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399685    GT:AD:DP:GQ:PL    0/1:89,83:173:99:2332,0,2540
11    1642884    rs6578597    A    C    1335.61    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.267;DB;DP=122;Dels=0.0;FS=2.578;HRun=0;HaplotypeScore=2.4607;MQ=58.16;MQ0=0;MQRankSum=2.123;QD=10.95;ReadPosRankSum=0.888;SNPEFF_AMINO_ACID_CHANGE=F147C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1642834_1643323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328953    GT:AD:DP:GQ:PL    0/1:68,54:122:99:1366,0,1767
11    1643036    rs58877168    A    C    35.13    QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=60;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=6.0698;MQ=42.15;MQ0=0;MQRankSum=0.589;QD=0.59;ReadPosRankSum=0.491;SNPEFF_AMINO_ACID_CHANGE=G96;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1642834_1643323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328953    GT:AD:DP:GQ:PL    0/1:46,11:60:65.12:65,0,955
11    1643228    rs61867574    G    A    380.85    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=1.865;DB;DP=92;Dels=0.0;FS=2.712;HRun=1;HaplotypeScore=8.44;MQ=49.22;MQ0=0;MQRankSum=1.265;QD=4.14;ReadPosRankSum=0.007;SNPEFF_AMINO_ACID_CHANGE=G32;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1642834_1643323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328953    GT:AD:DP:GQ:PL    0/1:60,29:92:99:411,0,1161
11    1643252    rs190925107    A    G    185.38    HaplotypeScoreFilter13;QDFilter2    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=110;Dels=0.0;FS=2.794;HRun=0;HaplotypeScore=17.3556;MQ=48.62;MQ0=2;MQRankSum=-3.944;QD=1.69;ReadPosRankSum=-1.845;SNPEFF_AMINO_ACID_CHANGE=C24;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1642834_1643323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328953    GT:AD:DP:GQ:PL    0/1:85,22:110:99:215,0,1938
11    1651120    rs66665994    G    T    941.61    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=106;Dels=0.0;FS=8.433;HRun=1;HaplotypeScore=4.3231;MQ=49.69;MQ0=3;MQRankSum=0.447;QD=8.88;ReadPosRankSum=0.993;SNPEFF_AMINO_ACID_CHANGE=R15L;SNPEFF_CODON_CHANGE=cGt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1651077_1651242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:68,36:106:99:972,0,1732
11    1651161    rs71454094    T    C    194.44    HaplotypeScoreFilter13    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.881;DB;DP=85;Dels=0.01;FS=12.833;HRun=1;HaplotypeScore=26.4092;MQ=46.0;MQ0=3;MQRankSum=-0.171;QD=2.26;ReadPosRankSum=-0.676;SNPEFF_AMINO_ACID_CHANGE=C29R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1651077_1651242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:68,17:85:99:224,0,1837
11    1651169    rs71454095    T    C    534.69    HaplotypeScoreFilter13    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.453;DB;DP=84;Dels=0.01;FS=1.019;HRun=1;HaplotypeScore=24.3223;MQ=46.89;MQ0=3;MQRankSum=-1.987;QD=6.29;ReadPosRankSum=-0.299;SNPEFF_AMINO_ACID_CHANGE=S31;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1651077_1651242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:52,32:84:99:565,0,1402
11    1651228    rs71454096    C    G    515.09    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=72;Dels=0.0;FS=1.075;HRun=3;HaplotypeScore=3.798;MQ=49.85;MQ0=0;MQRankSum=-2.422;QD=7.15;ReadPosRankSum=-0.641;SNPEFF_AMINO_ACID_CHANGE=A51G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1651077_1651242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:45,26:72:99:545,0,1020
11    1651540    rs61867581    C    G    1076    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.015;DB;DP=118;Dels=0.0;FS=4.416;HRun=0;HaplotypeScore=4.7087;MQ=53.42;MQ0=0;MQRankSum=-2.97;QD=9.12;ReadPosRankSum=1.874;SNPEFF_AMINO_ACID_CHANGE=S128C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1651324_1651784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:50,68:118:99:1106,0,960
11    1651550    rs61867582    C    T    1413    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=125;Dels=0.0;FS=4.27;HRun=0;HaplotypeScore=2.5239;MQ=53.82;MQ0=0;MQRankSum=-2.421;QD=11.3;ReadPosRankSum=2.464;SNPEFF_AMINO_ACID_CHANGE=C131;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1651324_1651784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:54,71:125:99:1443,0,1121
11    1651613    .    TTACTGCTGCCAGTCCAGCTGCTGTAAGCCC    T    1292.16    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=5.449;DP=173;FS=5.147;HRun=0;HaplotypeScore=4077.0878;IndelType=D;MQ=54.83;MQ0=0;MQRankSum=1.926;QD=7.38;ReadPosRankSum=-1.438;SNPEFF_AMINO_ACID_CHANGE=YCCQSSCCKP153-;SNPEFF_CODON_CHANGE=tactgctgccagtccagctgctgtaagccc/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_11_1651324_1651784;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:136,39:173:99:1331,0,17550
11    1651613    rs76143925    T    C    188.62    HaplotypeScoreFilter13;QDFilter2    AB=0.908;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.768;DB;DP=175;Dels=0.0;FS=3.696;HRun=2;HaplotypeScore=379.3366;MQ=54.83;MQ0=0;MQRankSum=-5.046;QD=1.08;ReadPosRankSum=5.5;SNPEFF_AMINO_ACID_CHANGE=P152;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1651324_1651784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:158,16:175:99:219,0,3605
11    1651645    rs77039648    A    G    267.58    HaplotypeScoreFilter13;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=1.289;DB;DP=148;Dels=0.0;FS=5.281;HRun=0;HaplotypeScore=341.8591;MQ=56.54;MQ0=0;MQRankSum=-6.033;QD=1.81;ReadPosRankSum=-1.765;SNPEFF_AMINO_ACID_CHANGE=Y163C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1651324_1651784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:130,17:148:99:298,0,3219
11    1651830    rs4752770    G    T    670.96    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.803;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.25;MQ0=0;MQRankSum=-0.928;QD=10.82;ReadPosRankSum=-1.879;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422553    GT:AD:DP:GQ:PL    0/1:37,24:62:99:701,0,1184
11    1687776    .    AC    A    187.34    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.564;DP=25;FS=10.371;HRun=5;HaplotypeScore=76.8283;IndelType=D;MQ=42.1;MQ0=2;MQRankSum=0.119;QD=6.94;ReadPosRankSum=-1.133;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AP006285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538190    GT:AD:DP:GQ:PL    0/1:18,9:25:99:226,0,544
11    1705473    rs11529366    C    T    467.15    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.888;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.52;MQ0=2;MQRankSum=1.306;QD=17.97;ReadPosRankSum=0.157;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=FAM99B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382166    GT:AD:DP:GQ:PL    1/1:2,24:26:42.11:500,42,0
11    1705587    rs76625851    G    A    227.49    MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=29.57;MQ0=1;MQRankSum=-0.14;QD=11.97;ReadPosRankSum=-2.014;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=FAM99B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382166    GT:AD:DP:GQ:PL    0/1:7,12:19:99:257,0,110
11    1706454    rs2460460    A    C    49.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=20.17;MQ0=1;QD=9.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=FAM99B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382166    GT:AD:DP:GQ:PL    1/1:0,5:5:8.99:82,9,0
11    1718266    rs4752744    G    A    334.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382160    GT:AD:DP:GQ:PL    1/1:0,10:11:27.09:367,27,0
11    1776024    rs76054354    TC    T    473.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=3;HaplotypeScore=45.0483;IndelType=D;MQ=55.99;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367196    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:516,42,0
11    1853107    rs616594    C    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_AMINO_ACID_CHANGE=T142I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1852683_1853126;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535046    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
11    1855854    rs2063551    G    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381968    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
11    1857042    rs907605    G    T    91.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.876;QD=7.65;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482118    GT:AD:DP:GQ:PL    0/1:7,5:12:99:122,0,161
11    1857112    rs907606    C    A    301.58    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=57.77;MQ0=0;MQRankSum=0.416;QD=14.36;ReadPosRankSum=2.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482118    GT:AD:DP:GQ:PL    0/1:11,10:21:99:332,0,310
11    1857173    rs564271    T    C    656.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=26.25;SNPEFF_AMINO_ACID_CHANGE=C106R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1857116_1857214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341958    GT:AD:DP:GQ:PL    1/1:0,25:25:57.16:689,57,0
11    1857747    rs3741232    T    C    226.97    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.966;DB;DP=28;Dels=0.0;FS=13.003;HRun=1;HaplotypeScore=0.8321;MQ=58.33;MQ0=0;MQRankSum=-0.381;QD=8.11;ReadPosRankSum=1.083;SNPEFF_AMINO_ACID_CHANGE=R203;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1857655_1857822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341958    GT:AD:DP:GQ:PL    0/1:17,11:28:99:257,0,472
11    1857751    rs3741231    C    G    214.81    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.08;DB;DP=27;Dels=0.0;FS=6.306;HRun=1;HaplotypeScore=0.8321;MQ=58.27;MQ0=0;MQRankSum=0.553;QD=7.96;ReadPosRankSum=0.659;SNPEFF_AMINO_ACID_CHANGE=P205A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1857655_1857822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341958    GT:AD:DP:GQ:PL    0/1:17,10:27:99:245,0,475
11    1857930    rs3741229    G    A    109.32    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=13.222;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=12.15;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417052    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,168
11    1858262    rs484955    C    T    619.09    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.063;DB;DP=53;Dels=0.0;FS=2.311;HRun=0;HaplotypeScore=0.9665;MQ=58.24;MQ0=0;MQRankSum=0.956;QD=11.68;ReadPosRankSum=-1.456;SNPEFF_AMINO_ACID_CHANGE=T289M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1858187_1858320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341958    GT:AD:DP:GQ:PL    0/1:29,24:53:99:649,0,829
11    1858572    rs2292474    C    T    51.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=7.41;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=R359W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1858422_1858751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341958    GT:AD:DP:GQ:PL    0/1:4,3:7:81.85:82,0,123
11    1861225    rs1877444    C    A    35.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=8.94;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341958    GT:AD:DP:GQ:PL    0/1:1,2:4:30.98:66,0,31
11    1861760    rs907610    T    C    319.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=26.59;SNPEFF_AMINO_ACID_CHANGE=S20;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1861758_1861886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252898    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:352,27,0
11    1862168    rs2271442    C    T    142.10    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=20.3;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341958    GT:AD:DP:GQ:PL    0/1:2,5:7:15.38:172,0,15
11    1874221    rs907612    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_1874200_1874427;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311604    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    1874292    rs907613    G    A    111.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.95;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_1874200_1874427;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311604    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:144,12,0
11    1887806    rs7938342    T    A    383.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_AMINO_ACID_CHANGE=H34Q;SNPEFF_CODON_CHANGE=caT/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1887695_1888141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381775    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:417,30,0
11    1891722    rs686722    C    T    336.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.06;SNPEFF_AMINO_ACID_CHANGE=R12W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1891474_1891795;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418975    GT:AD:DP:GQ:PL    1/1:0,14:14:27.09:370,27,0
11    1901467    rs2271439    A    C    336.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311604    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:369,30,0
11    1902768    rs621679    G    A    49.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_AMINO_ACID_CHANGE=A100T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1902662_1902826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311604    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
11    1904989    rs3817196    G    C    449.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418975    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:483,36,0
11    1905292    rs661348    T    C    1194.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6553;MQ=57.71;MQ0=0;QD=27.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418975    GT:AD:DP:GQ:PL    1/1:0,43:43:96.30:1228,96,0
11    1907940    rs11041676    T    C    2005.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.336;DB;DP=71;Dels=0.0;FS=3.815;HRun=2;HaplotypeScore=0.734;MQ=57.84;MQ0=0;MQRankSum=0.445;QD=28.25;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391480    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2039,134,0
11    1911890    rs629781    T    C    104.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417766    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:137,12,0
11    1944202    rs965912    A    G    2378.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278317    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2411,184,0
11    1944636    rs2734500    A    T    249.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278317    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:282,21,0
11    1947425    rs542362    C    G    369.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278317    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:403,30,0
11    1947575    rs540710    C    A    3535.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278317    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3535,274,0
11    1947793    rs686389    C    T    2953.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278317    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2986,232,0
11    1950302    rs629990    A    G    1206.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=28.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278317    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1240,99,0
11    1956212    rs513735    T    C    1260.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=59.3;MQ0=0;QD=38.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453458    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1293,99,0
11    1961690    rs112308659    GTC    G    333.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.448;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=61.3763;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=0.29;QD=27.76;ReadPosRankSum=0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278317    GT:AD:DP:GQ:PL    1/1:6,6:12:29.01:375,29,0
11    1971925    rs217201    G    T    32.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381514    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
11    1971962    rs217202    C    T    83.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381514    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
11    1973205    rs217205    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486931    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    1983338    rs217239    C    T    201.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381514    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
11    1983701    rs217241    C    T    233.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397294    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:266,21,0
11    1993975    rs190063    C    A    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_AMINO_ACID_CHANGE=R162S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_1993789_1994023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397294    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
11    2005794    rs71455916    C    A    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397297    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
11    2016908    rs217727    G    A    98.48    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=7.123;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=8.95;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC051649.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418612    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,232
11    2154188    rs2230949    G    A    868.88    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=0.314;DB;DP=93;Dels=0.0;FS=0.822;HRun=0;HaplotypeScore=2.8052;MQ=58.75;MQ0=0;MQRankSum=-1.415;QD=9.34;ReadPosRankSum=-0.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487262    GT:AD:DP:GQ:PL    0/1:58,35:93:99:899,0,1605
11    2154964    rs3213232    G    A    205.99    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=15;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=13.73;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300632    GT:AD:DP:GQ:PL    0/1:8,7:15:99:236,0,213
11    2156536    rs3213225    G    A    80.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=16.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300632    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:112,9,0
11    2161159    rs74918256    G    A    40.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300632    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:71,0,25
11    2161858    rs3741212    A    G    519.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300632    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:552,45,0
11    2161955    rs12807478    C    T    48.79    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-1.309;QD=3.75;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=P28S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2161874_2162177;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGF2AS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381363    GT:AD:DP:GQ:PL    0/1:8,5:13:78.78:79,0,246
11    2167543    rs1003483    T    G    1151.52    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.472;DB;DP=82;Dels=0.0;FS=10.189;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=14.04;ReadPosRankSum=-0.042;SNPEFF_AMINO_ACID_CHANGE=F125V;SNPEFF_CODON_CHANGE=Ttc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2167475_2169037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGF2AS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381363    GT:AD:DP:GQ:PL    0/1:40,42:82:99:1182,0,1221
11    2167618    rs1003484    A    G    299.82    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=1.076;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.904;QD=9.99;ReadPosRankSum=-1.033;SNPEFF_AMINO_ACID_CHANGE=T150A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2167475_2169037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=IGF2AS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381363    GT:AD:DP:GQ:PL    0/1:19,11:30:99:330,0,579
11    2169014    rs10770125    A    G    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=L144P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2168796_2169037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INS-IGF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397270    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
11    2181060    rs3842753    T    G    143.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.86;SNPEFF_AMINO_ACID_CHANGE=H77P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2181013_2181102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421783    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:176,15,0
11    2182004    rs5506    A    G    885.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324155    GT:AD:DP:GQ:PL    1/1:0,32:32:75.21:919,75,0
11    2182224    rs689    A    T    247.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324155    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
11    2186335    rs2070762    A    G    51.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=6.42;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324155    GT:AD:DP:GQ:PL    0/1:4,4:8:81.38:81,0,143
11    2187071    rs6578990    T    C    110.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381168    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
11    2188566    rs7925924    C    T    84.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333684    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:116,9,0
11    2189185    rs4074905    G    A    121.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333684    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
11    2190951    rs6356    C    T    196.52    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.398;DB;DP=26;Dels=0.0;FS=3.544;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.764;QD=7.56;ReadPosRankSum=0.501;SNPEFF_AMINO_ACID_CHANGE=V108M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2190880_2191101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381175    GT:AD:DP:GQ:PL    0/1:16,10:26:99:227,0,446
11    2191155    rs7925375    T    C    41.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.26;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333684    GT:AD:DP:GQ:PL    0/1:2,3:5:60.31:71,0,60
11    2192798    rs10840489    C    T    84.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=21.18;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333684    GT:AD:DP:GQ:PL    0/1:1,3:4:17.59:115,0,18
11    2322829    rs11022157    C    A    161.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381153    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:194,15,0
11    2323022    rs12276847    C    T    297.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=V24M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2322986_2323143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456145    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:331,27,0
11    2323029    rs756924    T    C    327.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_AMINO_ACID_CHANGE=T4A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2322986_2323290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381153    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
11    2323528    rs2074021    T    C    320.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182290    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:353,27,0
11    2323619    rs2234290    G    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182290    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    2324041    rs2074022    A    G    813.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.6;DB;DP=27;Dels=0.0;FS=11.139;HRun=0;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;MQRankSum=-1.067;QD=30.13;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_11_2323953_2324188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000451520    GT:AD:DP:GQ:PL    1/1:1,26:27:37.58:846,38,0
11    2329995    rs11554947    C    T    422.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=30.15;SNPEFF_AMINO_ACID_CHANGE=C103;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2329966_2330040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000182290    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:455,36,0
11    2330077    rs2234297    C    G    320.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182290    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
11    2337693    rs2234308    G    A    188.13    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=18;Dels=0.0;FS=4.931;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.466;QD=10.45;ReadPosRankSum=0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479508    GT:AD:DP:GQ:PL    0/1:10,8:18:99:218,0,360
11    2338038    rs2234310    G    A    77.30    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.32;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479508    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:107,0,31
11    2338469    rs2234314    A    T    40.06    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.437;QD=3.08;ReadPosRankSum=-0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479508    GT:AD:DP:GQ:PL    0/1:10,3:13:70.05:70,0,368
11    2339041    rs2234315    G    C    120.41    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=17.2;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TSPAN32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444307    GT:AD:DP:GQ:PL    0/1:1,6:7:26.71:150,0,27
11    2356603    rs2651795    T    C    1424.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=33.79;MQ0=3;QD=25.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC129929.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413483    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1458,123,0
11    2356701    rs113441481    C    T    808.91    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.626;DB;DP=91;Dels=0.0;FS=3.163;HRun=1;HaplotypeScore=0.0;MQ=42.85;MQ0=2;MQRankSum=0.869;QD=8.89;ReadPosRankSum=0.349;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC129929.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413483    GT:AD:DP:GQ:PL    0/1:55,36:91:99:839,0,1546
11    2356769    rs2651794    T    C    2971.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=42.51;MQ0=1;QD=30.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC129929.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413483    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3005,241,0
11    2357108    rs2173888    C    G    612.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=36.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC129929.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413483    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:646,48,0
11    2357128    rs2173887    T    G    141.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.69;MQ0=0;MQRankSum=-0.365;QD=14.15;ReadPosRankSum=-0.741;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC129929.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413483    GT:AD:DP:GQ:PL    0/1:4,6:10:99:171,0,116
11    2411536    rs12291676    C    T    202.89    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=20.29;ReadPosRankSum=-1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263645    GT:AD:DP:GQ:PL    0/1:3,7:10:77.26:233,0,77
11    2415964    rs800350    G    A    133.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263645    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
11    2415986    rs12285824    G    A    37.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.51;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263645    GT:AD:DP:GQ:PL    0/1:2,3:5:61.01:68,0,61
11    2416118    rs12277341    G    A    439.06    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.126;QD=19.96;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263645    GT:AD:DP:GQ:PL    0/1:8,14:22:99:469,0,222
11    2417893    rs14077    C    T    525.48    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.785;DB;DP=41;Dels=0.0;FS=9.328;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=-1.679;QD=12.82;ReadPosRankSum=0.325;SNPEFF_AMINO_ACID_CHANGE=S128;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2417858_2417944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000492627    GT:AD:DP:GQ:PL    0/1:22,19:41:99:555,0,670
11    2417935    rs2229751    T    C    202.40    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.195;DB;DP=31;Dels=0.0;FS=3.541;HRun=1;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=-2.066;QD=6.53;ReadPosRankSum=-0.473;SNPEFF_AMINO_ACID_CHANGE=A142;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2417858_2417944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000492627    GT:AD:DP:GQ:PL    0/1:19,11:31:99:232,0,614
11    2417971    rs12293244    C    T    247.35    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.206;DB;DP=34;Dels=0.0;FS=3.326;HRun=1;HaplotypeScore=1.9787;MQ=59.05;MQ0=0;MQRankSum=0.543;QD=7.28;ReadPosRankSum=-0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475945    GT:AD:DP:GQ:PL    0/1:21,12:34:99:277,0,658
11    2424647    rs2234281    G    A    154.62    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.635;QD=9.66;ReadPosRankSum=-1.164;SNPEFF_AMINO_ACID_CHANGE=G198R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2424075_2425106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380996    GT:AD:DP:GQ:PL    0/1:9,7:16:99:185,0,291
11    2424684    rs2234283    A    C    456.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.42;SNPEFF_AMINO_ACID_CHANGE=H210P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2424075_2425106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380996    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:489,39,0
11    2426984    rs2301696    G    C    80.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437542    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:112,9,0
11    2427291    rs800342    A    C    1195.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=G1088;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2427249_2427321;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533881    GT:AD:DP:GQ:PL    1/1:0,38:38:96.29:1228,96,0
11    2427364    rs61873460    T    C    847.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437542    GT:AD:DP:GQ:PL    1/1:0,32:32:75.19:881,75,0
11    2428341    rs11022676    G    A    47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=6.71;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437542    GT:AD:DP:GQ:PL    0/1:3,4:7:20.60:77,0,21
11    2432820    rs2651822    A    G    1050.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155858    GT:AD:DP:GQ:PL    1/1:0,30:30:87.24:1084,87,0
11    2432964    rs2074234    T    C    247.68    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.216;DB;DP=37;Dels=0.0;FS=3.472;HRun=1;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.69;ReadPosRankSum=1.713;SNPEFF_AMINO_ACID_CHANGE=T830;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2432865_2432997;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533881    GT:AD:DP:GQ:PL    0/1:23,14:37:99:278,0,751
11    2439621    rs2074236    A    T    77.83    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.46;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155858    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:108,0,30
11    2439651    rs886276    G    T    116.75    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.35;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155858    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:147,0,26
11    2439767    rs886277    T    C    248.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=N229S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2439757_2439821;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533881    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
11    2439876    rs886278    G    A    95.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155858    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
11    2443938    rs7122941    G    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155858    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
11    2538981    rs757085    C    T    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155840    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:72,0,27
11    2539003    rs729980    G    T    31.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=7.9;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155840    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:62,0,34
11    2542605    rs10400376    T    G    73.06    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.44;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155840    GT:AD:DP:GQ:PL    0/1:3,4:7:99:103,0,100
11    2542606    rs10400365    A    G    73.06    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.44;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155840    GT:AD:DP:GQ:PL    0/1:3,4:7:99:103,0,103
11    2604437    rs2012323    A    G    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155840    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    2683357    rs760419    A    G    924.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155840    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:958,75,0
11    2797320    rs163150    A    G    86.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155840    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
11    2798448    rs163148    A    G    84.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155840    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
11    2929552    rs429886    A    G    568.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=V78;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_2929463_2929560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312221    GT:AD:DP:GQ:PL    1/1:0,18:18:45.13:601,45,0
11    2939392    rs445679    G    A    242.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492567    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:275,21,0
11    2940236    rs444198    G    A    382.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=34.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492567    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:416,30,0
11    2940492    rs450244    T    C    1073.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.3;MQ0=0;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492567    GT:AD:DP:GQ:PL    1/1:0,33:33:87.21:1106,87,0
11    2972439    rs2071118    C    T    2742.88    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.686;DB;DP=205;Dels=0.0;FS=2.003;HRun=1;HaplotypeScore=3.5982;MQ=59.8;MQ0=0;MQRankSum=-0.672;QD=13.38;ReadPosRankSum=0.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483643    GT:AD:DP:GQ:PL    0/1:110,95:205:99:2773,0,3462
11    2973159    rs2071117    G    A    199.80    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.377;QD=18.16;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483643    GT:AD:DP:GQ:PL    0/1:3,8:11:88.50:230,0,89
11    2975987    rs2073581    A    G    925.33    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=56;Dels=0.0;FS=3.92;HRun=0;HaplotypeScore=0.5784;MQ=59.59;MQ0=0;MQRankSum=0.35;QD=16.52;ReadPosRankSum=0.799;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448187    GT:AD:DP:GQ:PL    0/1:23,33:56:99:955,0,613
11    2979798    rs7940694    G    T    778.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380542    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:812,60,0
11    2980831    rs2071114    T    C    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380542    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    2997485    rs2277298    G    A    104.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.036;QD=10.41;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380542    GT:AD:DP:GQ:PL    0/1:6,4:10:99:134,0,203
11    2999507    rs3814964    G    T    243.58    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.217;QD=9.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380542    GT:AD:DP:GQ:PL    0/1:14,11:25:99:274,0,403
11    3000330    rs11826983    G    T    130.10    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=3.004;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.845;QD=7.65;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380542    GT:AD:DP:GQ:PL    0/1:12,5:17:99:160,0,351
11    3000395    rs10488674    C    T    332.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=40;Dels=0.0;FS=1.452;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.378;QD=8.31;ReadPosRankSum=0.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380542    GT:AD:DP:GQ:PL    0/1:25,15:40:99:362,0,753
11    3026570    rs933181    G    A    1024.69    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=4.977;DB;DP=57;Dels=0.0;FS=7.104;HRun=0;HaplotypeScore=0.9332;MQ=59.27;MQ0=0;MQRankSum=0.363;QD=17.98;ReadPosRankSum=-0.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278224    GT:AD:DP:GQ:PL    0/1:26,31:57:99:1055,0,675
11    3026692    rs4758458    T    G    2824.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278224    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2858,220,0
11    3026712    rs7931504    C    T    613.44    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.069;DB;DP=70;Dels=0.0;FS=1.502;HRun=0;HaplotypeScore=0.8667;MQ=59.73;MQ0=0;MQRankSum=-0.025;QD=8.76;ReadPosRankSum=0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278224    GT:AD:DP:GQ:PL    0/1:45,25:70:99:643,0,1528
11    3028140    rs729662    G    A    2497.08    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.529;DB;DP=151;Dels=0.0;FS=1.339;HRun=0;HaplotypeScore=0.9998;MQ=59.85;MQ0=0;MQRankSum=2.187;QD=16.54;ReadPosRankSum=0.369;SNPEFF_AMINO_ACID_CHANGE=P613;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3028109_3028189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397114    GT:AD:DP:GQ:PL    0/1:72,79:151:99:2527,0,1884
11    3028270    rs7950766    A    G    981.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278224    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1014,81,0
11    3036933    rs2071104    G    T    127.70    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=12.77;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465240    GT:AD:DP:GQ:PL    0/1:3,7:10:92.18:158,0,92
11    3038719    rs4758459    T    A    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465240    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    3039352    rs10833079    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465240    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    3048140    rs494427    A    G    143.57    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=11.04;ReadPosRankSum=-0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439280    GT:AD:DP:GQ:PL    0/1:8,5:13:99:174,0,247
11    3050210    rs434114    A    G    766.82    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.931;DB;DP=50;Dels=0.0;FS=2.863;HRun=2;HaplotypeScore=1.9562;MQ=58.6;MQ0=0;MQRankSum=0.373;QD=15.34;ReadPosRankSum=0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439280    GT:AD:DP:GQ:PL    0/1:21,29:50:99:797,0,661
11    3061949    rs2285390    C    A    155.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278224    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:188,15,0
11    3061992    rs369461    T    C    140.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=15.56;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278224    GT:AD:DP:GQ:PL    0/1:3,6:9:96.71:170,0,97
11    3062467    rs105686    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278224    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    3109403    rs2289999    A    G    78.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.16;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357352    GT:AD:DP:GQ:PL    0/1:2,4:6:69.36:109,0,69
11    3109408    rs2289998    C    T    117.69    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.81;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357352    GT:AD:DP:GQ:PL    0/1:2,5:7:60.72:148,0,61
11    3109426    rs10160757    T    C    108.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=13.55;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357352    GT:AD:DP:GQ:PL    0/1:2,6:8:65.40:138,0,65
11    3121521    rs17263699    C    T    139.13    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.532;QD=12.65;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263650    GT:AD:DP:GQ:PL    0/1:6,5:11:99:169,0,172
11    3123399    rs58090999    A    G    63.27    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.65;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263650    GT:AD:DP:GQ:PL    0/1:2,3:5:55.08:93,0,55
11    3124435    rs1542188    G    A    35.47    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=5.07;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532951    GT:AD:DP:GQ:PL    0/1:5,2:7:65.46:65,0,138
11    3125719    rs4758525    T    C    162.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532951    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
11    3128315    rs4469872    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    3128380    rs3741355    T    C    163.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532951    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
11    3128774    rs3741353    T    C    321.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.699;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.447;QD=11.08;ReadPosRankSum=-0.712;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532951    GT:AD:DP:GQ:PL    0/1:14,14:28:99:351,0,508
11    3128915    rs3741351    T    C    183.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=13.14;ReadPosRankSum=-1.524;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532951    GT:AD:DP:GQ:PL    0/1:7,7:14:99:214,0,228
11    3129027    rs3741350    G    A    254.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.087;DB;DP=24;Dels=0.0;FS=1.706;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.835;QD=10.6;ReadPosRankSum=0.716;SNPEFF_AMINO_ACID_CHANGE=T191;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3129001_3129175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525498    GT:AD:DP:GQ:PL    0/1:15,9:24:99:284,0,401
11    3129200    rs113370820    GCCCCAC    G    330.37    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=83.1215;IndelType=D;MQ=49.66;MQ0=0;MQRankSum=-2.843;QD=23.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263650    GT:AD:DP:GQ:PL    0/1:8,6:14:99:369,0,548
11    3143479    rs35881186    G    A    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=51.77;MQ0=0;QD=13.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530372    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
11    3249552    rs4391795    C    T    69.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=1.231;QD=11.59;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=G159S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3248928_3250090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389832    GT:AD:DP:GQ:PL    0/1:2,4:6:47.04:100,0,47
11    3249984    rs12295710    C    T    1153.20    PASS    AB=0.224;AC=1;AF=0.50;AN=2;BaseQRankSum=2.504;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.05;MQ0=0;MQRankSum=1.354;QD=23.53;ReadPosRankSum=0.994;SNPEFF_AMINO_ACID_CHANGE=G15S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3248928_3250090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389832    GT:AD:DP:GQ:PL    0/1:11,38:49:99:1183,0,239
11    3250208    rs10741876    A    G    89.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389832    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
11    3381843    rs2157763    A    G    1001.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=56.44;MQ0=0;MQRankSum=-0.777;QD=31.29;ReadPosRankSum=-1.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330692    GT:AD:DP:GQ:PL    1/1:1,31:32:42.69:1034,43,0
11    3382069    rs6578335    C    G    424.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330692    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:457,36,0
11    3392034    rs3794191    G    A    647.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527386    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:680,51,0
11    3392098    rs3794189    C    G    1475.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527386    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1509,114,0
11    3392351    rs2269735    T    C    1321.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=37.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1355,102,0
11    3392357    rs2269734    T    G    1234.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,33:33:93.31:1268,93,0
11    3392745    rs2269733    G    A    1172.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=39.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,30:30:87.29:1205,87,0
11    3392811    rs72848292    G    A    729.12    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=2.743;DB;DP=64;Dels=0.0;FS=2.404;HRun=0;HaplotypeScore=0.9916;MQ=59.71;MQ0=0;MQRankSum=-0.314;QD=11.39;ReadPosRankSum=-0.663;SNPEFF_AMINO_ACID_CHANGE=S42;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3392807_3392933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    0/1:38,26:64:99:759,0,1056
11    3392972    rs2269732    G    A    1567.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1600,117,0
11    3393111    rs2269731    T    C    135.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
11    3394782    rs188841414    A    G    1266.02    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.536;DB;DP=110;Dels=0.0;FS=5.463;HRun=0;HaplotypeScore=0.7887;MQ=58.76;MQ0=0;MQRankSum=1.292;QD=11.51;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    0/1:57,53:110:99:1296,0,1708
11    3394894    rs10833820    G    A    2457.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2491,184,0
11    3394960    rs10833821    A    G    845.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:879,72,0
11    3394975    rs10833822    C    A    643.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:676,51,0
11    3398760    rs7932709    G    T    281.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
11    3398795    rs7932797    G    A    639.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005082    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:672,54,0
11    3400334    rs7931660    A    G    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330692    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
11    3412511    .    G    GA    289.64    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DP=36;FS=0.0;HRun=15;HaplotypeScore=209.0931;IndelType=I;MQ=50.91;MQ0=0;MQRankSum=-0.029;QD=7.83;ReadPosRankSum=0.495;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344740    GT:AD:DP:GQ:PL    0/1:18,13:36:35.75:329,0,36
11    3413023    rs61877985    C    G    377.56    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=3.464;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.66;MQ0=0;MQRankSum=-2.686;QD=17.98;ReadPosRankSum=-0.506;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526284    GT:AD:DP:GQ:PL    0/1:6,15:21:99:408,0,157
11    3428747    rs190577371    C    T    127.38    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.15;MQ0=0;MQRankSum=0.831;QD=10.61;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM86GP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448322    GT:AD:DP:GQ:PL    0/1:7,5:12:99:157,0,244
11    3431559    .    G    A    411.09    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=4.22;DP=179;Dels=0.0;FS=0.833;HRun=0;HaplotypeScore=3.5842;MQ=49.06;MQ0=16;MQRankSum=-7.781;QD=2.3;ReadPosRankSum=1.468;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:132,47:179:99:441,0,3561
11    3431576    .    G    A    312.53    QDFilter2    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=3.654;DP=203;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.4556;MQ=48.81;MQ0=18;MQRankSum=-8.075;QD=1.54;ReadPosRankSum=0.491;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:156,47:203:99:343,0,4610
11    3431630    .    C    T    102.48    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.323;DP=192;Dels=0.0;FS=23.864;HRun=0;HaplotypeScore=0.9789;MQ=51.25;MQ0=13;MQRankSum=-7.356;QD=0.53;ReadPosRankSum=2.998;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:157,35:192:99:132,0,4894
11    3431671    rs111587674    C    T    152.32    QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=3.354;DB;DP=157;Dels=0.0;FS=16.332;HRun=0;HaplotypeScore=0.5784;MQ=52.53;MQ0=9;MQRankSum=-7.03;QD=0.97;ReadPosRankSum=-0.537;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:125,32:157:99:182,0,3612
11    3434986    rs11027054    A    T    1050.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.87;MQ0=0;MQRankSum=2.292;QD=33.9;ReadPosRankSum=-1.086;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    1/1:2,29:31:57.64:1084,58,0
11    3435129    rs2898904    A    G    1442.87    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=3.213;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6506;MQ=58.42;MQ0=1;MQRankSum=-0.523;QD=13.36;ReadPosRankSum=-0.281;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:59,48:108:99:1473,0,1699
11    3435140    rs4328192    G    A    1449.51    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=4.436;DB;DP=112;Dels=0.0;FS=0.717;HRun=0;HaplotypeScore=0.8667;MQ=57.83;MQ0=1;MQRankSum=1.491;QD=12.94;ReadPosRankSum=-1.315;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:60,52:112:99:1480,0,1637
11    3435326    rs2898908    A    G    219.96    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=32;Dels=0.0;FS=2.716;HRun=1;HaplotypeScore=0.734;MQ=46.86;MQ0=0;MQRankSum=-2.857;QD=6.87;ReadPosRankSum=-1.468;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:21,11:32:99:250,0,691
11    3436211    rs7118203    G    A    935.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.711;DB;DP=64;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.444;QD=14.62;ReadPosRankSum=-0.444;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_3436152_3436887;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:32,32:64:99:966,0,1055
11    3436356    rs6578350    A    G    1908.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.52;MQ0=0;QD=31.82;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_3436152_3436887;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1942,150,0
11    3436392    rs10833983    G    A    1341.49    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.52;DB;DP=77;Dels=0.0;FS=1.884;HRun=0;HaplotypeScore=0.0;MQ=57.13;MQ0=0;MQRankSum=0.031;QD=17.42;ReadPosRankSum=-0.66;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_3436152_3436887;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:34,43:77:99:1371,0,916
11    3436465    rs7927461    A    T    1334.32    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.187;DB;DP=113;Dels=0.0;FS=0.784;HRun=1;HaplotypeScore=0.9998;MQ=48.73;MQ0=3;MQRankSum=0.549;QD=11.81;ReadPosRankSum=0.737;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_3436152_3436887;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:58,55:113:99:1364,0,1753
11    3436492    rs6578351    A    G    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=43.44;MQ0=4;QD=25.26;SNPEFF_AMINO_ACID_CHANGE=P2;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3436152_3436887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    1/1:0,128:128:99:3266,268,0
11    3436699    rs7122700    C    A    227.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.09;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=44.8;MQ0=0;MQRankSum=-1.142;QD=8.43;ReadPosRankSum=-1.349;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:15,12:27:99:258,0,495
11    3436704    rs1063709    G    A    394.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.763;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5678;MQ=47.24;MQ0=0;MQRankSum=-1.196;QD=18.81;ReadPosRankSum=-0.206;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:7,14:21:99:425,0,190
11    3436735    rs11027069    C    T    97.09    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.4;MQ0=0;MQRankSum=-0.198;QD=10.79;ReadPosRankSum=0.922;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC123788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328202    GT:AD:DP:GQ:PL    0/1:4,5:9:61.76:127,0,62
11    3490753    rs56005843    A    G    77.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.53;MQ0=1;QD=12.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC127526.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382076    GT:AD:DP:GQ:PL    1/1:0,6:6:11.97:110,12,0
11    3537500    rs4980413    T    G    1133.08    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.94;DB;DP=68;Dels=0.0;FS=0.944;HRun=0;HaplotypeScore=2.5571;MQ=57.99;MQ0=0;MQRankSum=-0.738;QD=16.66;ReadPosRankSum=-0.461;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP13-726E6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534291    GT:AD:DP:GQ:PL    0/1:26,42:68:99:1163,0,827
11    3578576    rs10834413    G    T    351.90    QDFilter2    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.166;DB;DP=243;DS;Dels=0.0;FS=7.73;HRun=0;HaplotypeScore=0.734;MQ=40.79;MQ0=31;MQRankSum=-11.554;QD=1.44;ReadPosRankSum=0.911;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC127526.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408092    GT:AD:DP:GQ:PL    0/1:141,101:243:99:382,0,4371
11    3578671    rs10834414    G    A    2155.17    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=8.298;DB;DP=246;DS;Dels=0.0;FS=28.44;HRun=0;HaplotypeScore=3.8701;MQ=43.33;MQ0=7;MQRankSum=-11.293;QD=8.76;ReadPosRankSum=1.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC127526.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408092    GT:AD:DP:GQ:PL    0/1:129,117:246:99:2185,0,3714
11    3578799    rs10767227    C    T    3850.22    HaplotypeScoreFilter13    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=10.05;DB;DP=250;DS;Dels=0.0;FS=1.368;HRun=1;HaplotypeScore=16.471;MQ=50.61;MQ0=6;MQRankSum=5.19;QD=15.4;ReadPosRankSum=2.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC127526.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408092    GT:AD:DP:GQ:PL    0/1:126,124:250:99:3850,0,3228
11    3578852    rs76973189    G    C    85.59    QDFilter2    AB=0.883;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.118;DB;DP=180;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=3.9088;MQ=50.76;MQ0=2;MQRankSum=-6.188;QD=0.47;ReadPosRankSum=2.794;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC127526.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408092    GT:AD:DP:GQ:PL    0/1:159,21:180:99:116,0,5163
11    3578871    .    G    A    34.01    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.487;DP=141;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4064;MQ=49.03;MQ0=2;MQRankSum=-5.296;QD=0.24;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC127526.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408092    GT:AD:DP:GQ:PL    0/1:121,19:141:64:64,0,3928
11    3621593    rs1812223    C    T    3143.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=38.23;MQ0=18;QD=24.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7E117P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422682    GT:AD:DP:GQ:PL    1/1:0,125:126:99:3176,253,0
11    3641399    rs10767349    G    A    255.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=TRPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399582    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:289,21,0
11    3641586    rs1567922    A    G    524.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=30.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=TRPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399582    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:557,42,0
11    3641598    rs10742075    T    C    404.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=23.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=TRPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399582    GT:AD:DP:GQ:PL    1/1:0,17:17:36.09:437,36,0
11    3641601    rs142825438    G    A    254.81    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.474;DB;DP=18;Dels=0.0;FS=4.708;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.896;QD=14.16;ReadPosRankSum=-0.896;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=TRPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399582    GT:AD:DP:GQ:PL    0/1:5,13:18:99:285,0,124
11    3641626    rs10742076    G    A    466.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=35.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=TRPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399582    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:500,39,0
11    3641703    rs10742077    G    C    131.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=TRPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399582    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:164,12,0
11    3661140    rs4910876    T    C    1241.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=G173;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3660872_3661601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359918    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1274,99,0
11    3661585    rs3062849    A    ATGG    1046.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=46.6238;IndelType=I;MQ=59.32;MQ0=0;QD=58.15;SNPEFF_AMINO_ACID_CHANGE=-25P;SNPEFF_CODON_CHANGE=-/CCA;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_11_3660872_3661601;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359918    GT:AD:DP:GQ:PL    1/1:2,16:18:48.16:1089,48,0
11    3663170    rs7111519    G    C    60.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=20.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359918    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:92,9,0
11    3681519    rs2280134    T    C    883.49    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.512;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=13.39;ReadPosRankSum=0.707;SNPEFF_AMINO_ACID_CHANGE=L257P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3680813_3681593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ART1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250693    GT:AD:DP:GQ:PL    0/1:28,38:66:99:913,0,792
11    3704775    rs111518482    CT    C    189.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=12;HaplotypeScore=50.4648;IndelType=D;MQ=60.53;MQ0=0;QD=10.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324932    GT:AD:DP:GQ:PL    1/1:7,10:18:29.85:232,30,0
11    3714311    rs694102    T    A    632.02    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.798;QD=19.15;ReadPosRankSum=1.187;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488828    GT:AD:DP:GQ:PL    0/1:13,20:33:99:662,0,381
11    3714489    rs1875    C    T    2627.60    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=173;Dels=0.0;FS=1.251;HRun=0;HaplotypeScore=0.0;MQ=59.87;MQ0=0;MQRankSum=0.996;QD=15.19;ReadPosRankSum=1.639;SNPEFF_AMINO_ACID_CHANGE=A1428;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3714462_3714605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324932    GT:AD:DP:GQ:PL    0/1:84,89:173:99:2658,0,2327
11    3723489    rs10767513    G    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.99;MQ0=1;QD=15.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324932    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:78,6,0
11    3723941    rs35488940    C    T    226.59    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.026;DB;DP=29;Dels=0.0;FS=1.596;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.129;QD=7.81;ReadPosRankSum=-0.591;SNPEFF_AMINO_ACID_CHANGE=P1088;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3723693_3724122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324932    GT:AD:DP:GQ:PL    0/1:19,10:29:99:257,0,580
11    3740588    rs612785    G    T    539.29    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.131;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.535;QD=11.01;ReadPosRankSum=-0.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530516    GT:AD:DP:GQ:PL    0/1:28,21:49:99:569,0,907
11    3742062    rs55821497    C    CA    47.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.198;DB;DP=16;FS=0.0;HRun=17;HaplotypeScore=151.4601;IndelType=I;MQ=51.42;MQ0=0;MQRankSum=-1.495;QD=2.97;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324932    GT:AD:DP:GQ:PL    1/1:8,6:16:8.36:89,8,0
11    3746465    rs276901    C    G    570.83    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.056;DB;DP=45;Dels=0.0;FS=1.189;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=12.69;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324932    GT:AD:DP:GQ:PL    0/1:23,22:45:99:601,0,763
11    3789982    rs146552084    GAAAAAGAAAAA    G    1587.48    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=3.247;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=374.2162;IndelType=D;MQ=49.79;MQ0=0;MQRankSum=-1.476;QD=44.1;ReadPosRankSum=1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324932    GT:AD:DP:GQ:PL    0/1:17,19:36:99:1627,0,1268
11    3799985    rs188044    G    A    226.66    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.67;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324932    GT:AD:DP:GQ:PL    0/1:3,7:10:91.93:257,0,92
11    3829419    rs2278845    G    C    854.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300730    GT:AD:DP:GQ:PL    1/1:0,25:25:72.20:888,72,0
11    3838910    rs7946577    G    C    103.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.94;SNPEFF_AMINO_ACID_CHANGE=E105Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_3837982_3839411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PGAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502872    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
11    4103524    rs2304891    A    G    867.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.72;SNPEFF_AMINO_ACID_CHANGE=Q187;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4103414_4103581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533977    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:900,66,0
11    4104060    rs2898950    A    C    448.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533445    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:481,36,0
11    4104087    rs10767828    T    C    544.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533445    GT:AD:DP:GQ:PL    1/1:0,19:19:48.11:578,48,0
11    4104355    rs894455    T    C    284.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533445    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:317,27,0
11    4104745    rs2289570    C    G    182.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533445    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:215,18,0
11    4123345    rs1348310    C    G    707.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:741,54,0
11    4123427    rs232054    C    G    174.03    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=17.4;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    0/1:4,6:10:99:204,0,117
11    4128486    rs725519    A    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    4133317    rs56336381    C    A    1147.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526350    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1180,84,0
11    4139450    rs139569018    CT    C    191.76    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=28;FS=0.0;HRun=14;HaplotypeScore=144.6431;IndelType=D;MQ=57.89;MQ0=0;MQRankSum=-0.701;QD=6.85;ReadPosRankSum=0.808;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    0/1:11,14:28:99:231,0,162
11    4141132    rs183484    C    A    705.08    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.795;DB;DP=61;Dels=0.0;FS=1.001;HRun=0;HaplotypeScore=0.8667;MQ=59.62;MQ0=0;MQRankSum=-0.022;QD=11.56;ReadPosRankSum=0.356;SNPEFF_AMINO_ACID_CHANGE=R187;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4141075_4141158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423050    GT:AD:DP:GQ:PL    0/1:34,27:61:99:735,0,972
11    4150238    rs5789321    G    GT    145.94    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=35;FS=0.0;HRun=14;HaplotypeScore=280.7076;IndelType=I;MQ=55.17;MQ0=0;MQRankSum=0.189;QD=4.17;ReadPosRankSum=-0.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529109    GT:AD:DP:GQ:PL    0/1:17,11:35:70.56:185,0,71
11    4153407    rs4910890    C    T    79.40    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=9.92;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    0/1:1,7:8:22.65:109,0,23
11    4153408    rs4910891    A    G    79.43    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=11.35;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    0/1:1,6:7:17.26:109,0,17
11    4153767    rs10835662    A    G    608.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:641,48,0
11    4156661    rs10767844    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    4159306    .    A    ACCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGAC    572.28    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=162.9949;IndelType=I;MQ=39.0;MQ0=0;QD=95.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    1/1:0,2:6:18.06:614,18,0
11    4159324    rs10835669    T    C    241.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.05;MQ0=0;QD=26.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300738    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:274,21,0
11    4159457    rs9937    A    G    793.94    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=52;Dels=0.0;FS=3.983;HRun=0;HaplotypeScore=1.6643;MQ=56.82;MQ0=0;MQRankSum=0.746;QD=15.27;ReadPosRankSum=-1.194;SNPEFF_AMINO_ACID_CHANGE=T403;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4159425_4160105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537197    GT:AD:DP:GQ:PL    0/1:21,31:52:99:824,0,671
11    4159466    rs1042858    G    A    1607.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.13;MQ0=0;MQRankSum=-1.109;QD=32.15;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=A406;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4159425_4160105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537197    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1641,120,0
11    4185463    rs979941    T    C    214.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.663;QD=15.32;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543838    GT:AD:DP:GQ:PL    0/1:7,7:14:99:245,0,251
11    4185595    rs979942    T    G    643.92    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.831;DB;DP=45;Dels=0.0;FS=1.177;HRun=2;HaplotypeScore=1.7781;MQ=59.59;MQ0=0;MQRankSum=0.512;QD=14.31;ReadPosRankSum=0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543838    GT:AD:DP:GQ:PL    0/1:21,24:45:99:674,0,585
11    4254512    .    G    A    111.05    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.85;MQ0=34;MQRankSum=2.533;QD=2.41;ReadPosRankSum=0.244;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-437G21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532495    GT:AD:DP:GQ:PL    1/1:27,19:46:14.99:144,15,0
11    4263173    rs71480460    A    C    52.49    MQFilter40;QDFilter2    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=21.07;MQ0=10;MQRankSum=-1.347;QD=1.75;ReadPosRankSum=0.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-437G21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524542    GT:AD:DP:GQ:PL    0/1:14,16:30:82.49:82,0,314
11    4263858    rs146109305    T    G    186.64    MQFilter40    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=4.201;DB;DP=78;Dels=0.0;FS=4.178;HRun=2;HaplotypeScore=0.0;MQ=21.29;MQ0=15;MQRankSum=-2.563;QD=2.39;ReadPosRankSum=0.146;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-437G21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524542    GT:AD:DP:GQ:PL    0/1:46,32:78:99:217,0,657
11    4263923    rs61898885    T    A    168.43    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.713;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8294;MQ=24.65;MQ0=7;MQRankSum=1.344;QD=4.95;ReadPosRankSum=0.079;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-437G21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524542    GT:AD:DP:GQ:PL    0/1:20,14:34:99:198,0,185
11    4263932    rs11031391    C    T    138.71    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.174;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8294;MQ=26.86;MQ0=5;MQRankSum=0.58;QD=5.14;ReadPosRankSum=0.239;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-437G21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524542    GT:AD:DP:GQ:PL    0/1:18,9:27:99:169,0,230
11    4351584    rs71459812    C    A    1291.03    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.132;DB;DP=124;Dels=0.0;FS=2.662;HRun=1;HaplotypeScore=1.98;MQ=35.29;MQ0=26;MQRankSum=0.904;QD=10.41;ReadPosRankSum=1.061;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-437G21.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334468    GT:AD:DP:GQ:PL    0/1:72,52:124:99:1321,0,1515
11    4351682    rs11529255    A    C    623.89    MQFilter40    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.5789;MQ=27.49;MQ0=44;MQRankSum=0.607;QD=5.83;ReadPosRankSum=-0.873;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-437G21.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334468    GT:AD:DP:GQ:PL    0/1:75,32:107:99:654,0,868
11    4351687    rs138458695    G    A    709.74    MQFilter40    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.018;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.581;MQ=26.26;MQ0=45;MQRankSum=0.178;QD=6.7;ReadPosRankSum=0.488;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-437G21.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334468    GT:AD:DP:GQ:PL    0/1:63,43:106:99:740,0,687
11    4389404    rs80193749    AG    A    272.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=20;FS=7.474;HRun=3;HaplotypeScore=49.816;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.038;QD=13.64;ReadPosRankSum=1.172;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_4388493_4389616;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52B4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000408920    GT:AD:DP:GQ:PL    0/1:10,10:20:99:312,0,362
11    4406479    rs4144331    G    T    268.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.675;QD=8.95;ReadPosRankSum=0.156;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254436    GT:AD:DP:GQ:PL    0/1:18,12:30:99:298,0,420
11    4407725    rs2269328    A    G    78.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.64;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254436    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:109,0,31
11    4409386    rs2554933    C    T    204.70    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.78;MQ0=0;MQRankSum=-0.537;QD=10.77;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254436    GT:AD:DP:GQ:PL    0/1:11,8:19:99:235,0,381
11    4409511    rs12805578    A    G    1093.53    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=104;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7264;MQ=59.78;MQ0=0;MQRankSum=0.063;QD=10.51;ReadPosRankSum=0.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254436    GT:AD:DP:GQ:PL    0/1:56,48:104:99:1124,0,1820
11    4410752    rs2855142    C    T    183.61    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.174;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=10.2;ReadPosRankSum=-0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254436    GT:AD:DP:GQ:PL    0/1:11,7:18:99:214,0,395
11    4411241    rs926101    C    T    664.76    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=57;Dels=0.0;FS=8.386;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.477;QD=11.66;ReadPosRankSum=-1.107;SNPEFF_AMINO_ACID_CHANGE=Q133;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4411232_4411688;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254436    GT:AD:DP:GQ:PL    0/1:33,24:57:99:695,0,1163
11    4411819    rs5030768    T    C    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254436    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:70,0,66
11    4467638    rs191353    T    C    106.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.65;ReadPosRankSum=-0.729;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325719    GT:AD:DP:GQ:PL    0/1:5,5:10:99:136,0,181
11    4467757    rs12274969    G    C    982.63    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.131;DB;DP=83;Dels=0.0;FS=7.979;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.684;QD=11.84;ReadPosRankSum=-1.619;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325719    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1013,0,1288
11    4467938    rs111318500    T    C    507.68    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.883;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.893;MQ=60.0;MQ0=0;MQRankSum=-0.63;QD=15.38;ReadPosRankSum=-0.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325719    GT:AD:DP:GQ:PL    0/1:16,17:33:99:538,0,561
11    4496613    rs9633905    C    A    826.61    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=58.63;MQ0=0;MQRankSum=2.024;QD=15.03;ReadPosRankSum=1.107;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR52K3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416879    GT:AD:DP:GQ:PL    0/1:28,27:55:99:857,0,823
11    4496846    rs2278170    C    T    2282.90    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=5.354;DB;DP=183;Dels=0.0;FS=3.634;HRun=0;HaplotypeScore=4.1287;MQ=59.87;MQ0=0;MQRankSum=0.164;QD=12.47;ReadPosRankSum=0.255;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR52K3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416879    GT:AD:DP:GQ:PL    0/1:101,82:183:99:2313,0,2584
11    4496916    rs2278171    C    T    1539.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.656;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.78;MQ0=0;MQRankSum=-1.052;QD=14.8;ReadPosRankSum=0.175;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR52K3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416879    GT:AD:DP:GQ:PL    0/1:52,52:104:99:1570,0,1428
11    4496961    rs2278172    C    T    839.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.341;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9574;MQ=59.17;MQ0=0;MQRankSum=-0.407;QD=15.0;ReadPosRankSum=0.978;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR52K3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416879    GT:AD:DP:GQ:PL    0/1:28,28:56:99:870,0,738
11    4592923    rs72189386    CAA    C    82.38    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=19;FS=2.772;HRun=16;HaplotypeScore=142.6209;IndelType=D;MQ=44.75;MQ0=0;MQRankSum=3.079;QD=4.34;ReadPosRankSum=3.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307616    GT:AD:DP:GQ:PL    0/1:11,7:19:99:121,0,304
11    4593052    rs10836309    G    T    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307616    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    4593334    rs34520159    T    A    221.64    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=13.04;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307616    GT:AD:DP:GQ:PL    0/1:7,10:17:99:252,0,233
11    4594739    rs919519    C    T    311.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307616    GT:AD:DP:GQ:PL    1/1:0,14:14:27.08:344,27,0
11    4594885    rs2657148    G    A    52.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307616    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
11    4594924    rs919518    C    T    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307616    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    4608542    rs1847632    C    T    1815.41    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=3.56;DB;DP=132;Dels=0.0;FS=7.09;HRun=0;HaplotypeScore=0.0;MQ=46.05;MQ0=6;MQRankSum=0.675;QD=13.75;ReadPosRankSum=0.999;SNPEFF_AMINO_ACID_CHANGE=T167M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4608021_4609135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52I2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312614    GT:AD:DP:GQ:PL    0/1:66,65:132:99:1845,0,1659
11    4615234    rs4910511    A    G    2324.34    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.795;DB;DP=175;Dels=0.0;FS=0.619;HRun=0;HaplotypeScore=1.986;MQ=54.87;MQ0=0;MQRankSum=-1.155;QD=13.28;ReadPosRankSum=-0.087;SNPEFF_AMINO_ACID_CHANGE=H13R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4615212_4616243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450052    GT:AD:DP:GQ:PL    0/1:87,88:175:99:2354,0,2502
11    4615390    rs2010722    C    T    3632.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=25.2;MQ0=26;QD=22.42;SNPEFF_AMINO_ACID_CHANGE=T41I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4615269_4616240;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530443    GT:AD:DP:GQ:PL    1/1:0,162:162:99:3633,334,0
11    4615508    rs2010719    C    G    900.46    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=155;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=45.28;MQ0=11;MQRankSum=-4.893;QD=5.81;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=S104;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4615212_4616243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52I1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450052    GT:AD:DP:GQ:PL    0/1:95,60:155:99:930,0,2675
11    4616412    rs10836328    T    G    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450052    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    4621485    rs2231978    C    G    399.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526337    GT:AD:DP:GQ:PL    1/1:0,14:14:36.08:432,36,0
11    4622159    rs2231972    T    C    920.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531644    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:953,72,0
11    4623106    rs999818    T    C    40.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533021    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
11    4623279    rs2231970    A    G    42.51    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.05;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.85;QD=2.24;ReadPosRankSum=1.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533021    GT:AD:DP:GQ:PL    0/1:15,4:19:72.50:73,0,556
11    4624394    rs7943486    T    C    360.16    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.75;DB;DP=25;Dels=0.0;FS=3.128;HRun=0;HaplotypeScore=1.8666;MQ=59.07;MQ0=0;MQRankSum=0.794;QD=14.41;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300747    GT:AD:DP:GQ:PL    0/1:14,11:25:99:390,0,416
11    4624432    rs17314159    C    A    558.47    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.28;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.577;MQ=59.46;MQ0=0;MQRankSum=-1.132;QD=12.99;ReadPosRankSum=-0.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300747    GT:AD:DP:GQ:PL    0/1:20,23:43:99:588,0,676
11    4673647    rs4910524    A    G    414.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396952    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:447,39,0
11    4703165    rs1123991    C    A    1360.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=V259;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4701401_4703991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51E2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396950    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1394,105,0
11    4729650    rs7122597    G    A    92.41    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.27;ReadPosRankSum=0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477339    GT:AD:DP:GQ:PL    0/1:5,4:9:99:122,0,143
11    4730594    rs4331086    A    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477339    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    4730727    rs4430501    G    C    469.73    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.682;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-0.874;QD=12.7;ReadPosRankSum=0.904;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477339    GT:AD:DP:GQ:PL    0/1:21,16:37:99:500,0,714
11    4730985    rs4619142    C    T    4718.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5584;MQ=59.48;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=H51Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4730835_4731698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103710.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357170    GT:AD:DP:GQ:PL    1/1:0,133:133:99:4718,352,0
11    4731180    rs4432013    G    A    2346.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=59.64;MQ0=0;QD=36.67;SNPEFF_AMINO_ACID_CHANGE=V116I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4730835_4731698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103710.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357170    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2380,175,0
11    4731468    rs4436535    G    A    1762.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=59.61;MQ0=0;MQRankSum=0.217;QD=36.72;ReadPosRankSum=1.516;SNPEFF_AMINO_ACID_CHANGE=V212I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4730835_4731698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103710.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357170    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1796,101,0
11    4731583    rs4471413    C    T    4055.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.465;DB;DP=123;Dels=0.0;FS=3.417;HRun=0;HaplotypeScore=1.5781;MQ=59.81;MQ0=0;MQRankSum=0.38;QD=32.97;ReadPosRankSum=-0.437;SNPEFF_AMINO_ACID_CHANGE=P250L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4730835_4731698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103710.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357170    GT:AD:DP:GQ:PL    1/1:1,122:123:99:4056,259,0
11    4791111    rs17324812    T    C    396.77    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.196;DB;DP=29;Dels=0.0;FS=1.455;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;MQRankSum=1.506;QD=13.68;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=T13A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4790209_4791147;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343430    GT:AD:DP:GQ:PL    0/1:14,15:29:99:427,0,372
11    4824878    rs2053116    A    C    1299.77    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6545;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=14.77;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=S245A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4824663_4825610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356069    GT:AD:DP:GQ:PL    0/1:43,45:88:99:1330,0,1442
11    4825010    rs6578533    T    A    734.46    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.909;DB;DP=54;Dels=0.0;FS=1.104;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.56;QD=13.6;ReadPosRankSum=0.916;SNPEFF_AMINO_ACID_CHANGE=N201Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4824663_4825610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356069    GT:AD:DP:GQ:PL    0/1:28,26:54:99:764,0,807
11    4825225    rs7941731    A    G    864.38    PASS    AB=0.34;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=50;Dels=0.0;FS=4.257;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.056;QD=17.29;ReadPosRankSum=-1.66;SNPEFF_AMINO_ACID_CHANGE=I129T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4824663_4825610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356069    GT:AD:DP:GQ:PL    0/1:17,33:50:99:894,0,567
11    4827283    rs919899    A    T    617.22    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.746;DB;DP=64;Dels=0.0;FS=1.302;HRun=1;HaplotypeScore=2.8995;MQ=60.0;MQ0=0;MQRankSum=0.505;QD=9.64;ReadPosRankSum=-0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380390    GT:AD:DP:GQ:PL    0/1:36,28:64:99:647,0,1000
11    4827322    rs934485    A    G    509.23    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=1.229;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=12.42;ReadPosRankSum=-0.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380390    GT:AD:DP:GQ:PL    0/1:25,16:41:99:539,0,814
11    4869265    rs12364864    C    G    64    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.0;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322101    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:94,0,29
11    4869649    rs12361955    G    A    769.14    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=60;Dels=0.0;FS=3.616;HRun=1;HaplotypeScore=1.6988;MQ=58.91;MQ0=0;MQRankSum=0.694;QD=12.82;ReadPosRankSum=-2.633;SNPEFF_AMINO_ACID_CHANGE=L264F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4869427_4870514;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322101    GT:AD:DP:GQ:PL    0/1:34,26:60:99:799,0,1096
11    4869906    rs7117260    A    C    1570.93    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.822;DB;DP=104;Dels=0.0;FS=7.945;HRun=0;HaplotypeScore=0.0;MQ=57.98;MQ0=0;MQRankSum=0.532;QD=15.11;ReadPosRankSum=0.866;SNPEFF_AMINO_ACID_CHANGE=L178R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4869427_4870514;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322101    GT:AD:DP:GQ:PL    0/1:44,60:104:99:1601,0,1291
11    4870139    rs11602455    G    A    793.65    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.908;DB;DP=61;Dels=0.0;FS=1.003;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.104;QD=13.01;ReadPosRankSum=1.598;SNPEFF_AMINO_ACID_CHANGE=V100;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4869427_4870514;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51S1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322101    GT:AD:DP:GQ:PL    0/1:32,29:61:99:824,0,952
11    4870261    rs11602499    G    C    712.29    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.166;DB;DP=49;Dels=0.0;FS=1.154;HRun=1;HaplotypeScore=0.7887;MQ=58.58;MQ0=0;MQRankSum=-0.54;QD=14.54;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=Q60E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4869427_4870514;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322101    GT:AD:DP:GQ:PL    0/1:21,27:49:99:742,0,677
11    4870298    rs11601065    T    G    802.11    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=47;Dels=0.0;FS=2.509;HRun=1;HaplotypeScore=1.7331;MQ=59.01;MQ0=0;MQRankSum=0.674;QD=17.07;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=A47;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4869427_4870514;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51S1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322101    GT:AD:DP:GQ:PL    0/1:21,26:47:99:832,0,637
11    4880892    rs11034368    T    C    1196.18    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=2.66;DB;DP=84;Dels=0.0;FS=3.127;HRun=0;HaplotypeScore=1.6671;MQ=59.78;MQ0=0;MQRankSum=0.169;QD=14.24;ReadPosRankSum=0.935;SNPEFF_AMINO_ACID_CHANGE=Q301;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4880886_4881794;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51H1P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322059    GT:AD:DP:GQ:PL    0/1:44,39:84:99:1226,0,1439
11    4928866    rs7941509    C    T    1220.46    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.591;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.125;QD=14.03;ReadPosRankSum=0.018;SNPEFF_AMINO_ACID_CHANGE=A78;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4928633_4929509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544684    GT:AD:DP:GQ:PL    0/1:43,44:87:99:1250,0,1313
11    4929712    rs7941649    G    A    291.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=24;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.5784;MQ=58.05;MQ0=0;MQRankSum=0.433;QD=12.16;ReadPosRankSum=1.357;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359350    GT:AD:DP:GQ:PL    0/1:12,12:24:99:322,0,418
11    4937040    rs2595978    G    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380390    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    4945196    rs1378739    T    G    1524.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_AMINO_ACID_CHANGE=Y125S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4944531_4945637;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321961    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1558,117,0
11    4964627    rs2595993    C    A    427.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380373    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:460,36,0
11    4964649    rs2595992    G    T    453.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380373    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:487,36,0
11    4964753    rs2605301    A    G    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380373    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    4965239    rs2570581    G    T    531.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380373    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:564,42,0
11    4965301    rs2605303    G    T    912.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380373    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:946,72,0
11    4967279    rs10540527    GACA    G    379.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=40.9982;IndelType=D;MQ=50.2;MQ0=2;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380373    GT:AD:DP:GQ:PL    1/1:2,10:9:27.09:422,27,0
11    4967468    rs28698374    G    A    5079    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=53.68;MQ0=4;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=T288M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4967355_4968356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380373    GT:AD:DP:GQ:PL    1/1:0,154:154:99:5079,379,0
11    4968198    rs3845246    C    A    1790.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2437;MQ=37.64;MQ0=5;QD=25.58;SNPEFF_AMINO_ACID_CHANGE=G45C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4967355_4968356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380373    GT:AD:DP:GQ:PL    1/1:0,69:70:99:1824,159,0
11    4975900    rs4482027    T    C    83.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.44;MQ0=1;QD=16.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380371    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:115,9,0
11    4975907    rs55717044    A    C    82.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.44;MQ0=1;QD=16.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380371    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:115,9,0
11    4976077    rs2570573    T    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=21.45;MQ0=1;QD=9.75;SNPEFF_AMINO_ACID_CHANGE=K289N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4976002_4976943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380371    GT:AD:DP:GQ:PL    1/1:0,7:7:9.02:100,9,0
11    4976086    rs2570572    C    T    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.54;MQ0=1;QD=12.66;SNPEFF_AMINO_ACID_CHANGE=P286;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4976002_4976943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380371    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:134,12,0
11    4976145    rs56066301    C    G    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=20.25;SNPEFF_AMINO_ACID_CHANGE=G267R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4976002_4976943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380371    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:134,12,0
11    4976291    rs55889636    G    A    531.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.6;MQ0=2;QD=27.97;SNPEFF_AMINO_ACID_CHANGE=S218F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4976002_4976943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380371    GT:AD:DP:GQ:PL    1/1:1,18:19:48.10:564,48,0
11    4976768    rs112749434    C    T    234.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=26.06;SNPEFF_AMINO_ACID_CHANGE=G59E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4976002_4976943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380371    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:267,24,0
11    4976811    rs28482315    C    A    833.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.37;MQ0=12;QD=21.92;SNPEFF_AMINO_ACID_CHANGE=G45C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_4976002_4976943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380371    GT:AD:DP:GQ:PL    1/1:0,38:38:75.21:866,75,0
11    5012592    rs61880629    C    T    3407.53    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.321;DB;DP=246;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=1.008;QD=13.85;ReadPosRankSum=-0.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477339    GT:AD:DP:GQ:PL    0/1:129,117:246:99:3408,0,3563
11    5012894    rs2499958    A    G    264.19    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=55.69;MQ0=0;MQRankSum=0.0;QD=26.42;ReadPosRankSum=1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477339    GT:AD:DP:GQ:PL    0/1:2,8:10:44.57:294,0,45
11    5013421    rs11409564    G    GT    396.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.201;DB;DP=39;FS=0.0;HRun=10;HaplotypeScore=185.3055;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=-2.372;QD=10.17;ReadPosRankSum=2.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477339    GT:AD:DP:GQ:PL    1/1:28,11:39:53.32:439,53,0
11    5013423    rs60905583    T    TG    866.19    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.553;DB;DP=39;FS=1.378;HRun=0;HaplotypeScore=128.521;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=-0.629;QD=22.21;ReadPosRankSum=0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MMP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477339    GT:AD:DP:GQ:PL    0/1:14,25:39:54.91:905,0,55
11    5020416    rs2445290    A    G    975.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.072;DB;DP=85;Dels=0.0;FS=0.839;HRun=1;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=0.597;QD=11.48;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=L68;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5020213_5021160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321543    GT:AD:DP:GQ:PL    0/1:51,34:85:99:1006,0,1608
11    5079946    rs2445332    C    T    1895.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=58.9;MQ0=0;QD=34.47;SNPEFF_AMINO_ACID_CHANGE=V304;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5079880_5080857;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321522    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1929,147,0
11    5080359    rs11035396    G    A    489.09    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.27;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.774;QD=14.38;ReadPosRankSum=0.991;SNPEFF_AMINO_ACID_CHANGE=R167W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5079880_5080857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321522    GT:AD:DP:GQ:PL    0/1:16,18:34:99:519,0,414
11    5080844    rs16909440    T    C    612.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.71;DB;DP=39;Dels=0.0;FS=1.303;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.775;QD=15.7;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=N5S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5079880_5080857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321522    GT:AD:DP:GQ:PL    0/1:18,21:39:99:642,0,578
11    5141876    rs10837373    G    A    1538.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.73;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380369    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1571,117,0
11    5141902    rs10837374    T    C    1807.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.16;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=T303A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5141849_5142847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380369    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1840,138,0
11    5141980    rs4426129    A    G    3277.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.53;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=C277R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5141849_5142847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380369    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3277,259,0
11    5142134    rs11035760    C    T    1799.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_AMINO_ACID_CHANGE=Q225;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5141849_5142847;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380369    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1833,138,0
11    5142270    rs10837375    T    G    1780.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=Y180S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5141849_5142847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380369    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1814,141,0
11    5142549    rs7947334    T    C    1884.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9454;MQ=59.11;MQ0=0;MQRankSum=1.599;QD=36.24;ReadPosRankSum=-0.733;SNPEFF_AMINO_ACID_CHANGE=D87G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5141849_5142847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380369    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1918,147,0
11    5153261    rs2472530    A    G    1739.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.19;MQ0=0;QD=30.52;SNPEFF_AMINO_ACID_CHANGE=F204;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5152922_5153872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307388    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1773,147,0
11    5172786    rs10768611    A    G    2027    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=S272P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5172661_5173599;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328942    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2060,163,0
11    5221645    rs11512276    C    G    709.17    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.486;DB;DP=68;Dels=0.0;FS=8.316;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=10.43;ReadPosRankSum=-0.07;SNPEFF_AMINO_ACID_CHANGE=G96R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5220965_5221930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51V1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321255    GT:AD:DP:GQ:PL    0/1:38,30:68:99:739,0,1183
11    5221825    rs11036212    G    A    1515.11    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.224;DB;DP=106;Dels=0.0;FS=1.699;HRun=3;HaplotypeScore=4.7224;MQ=59.43;MQ0=0;MQRankSum=-0.329;QD=14.29;ReadPosRankSum=-1.751;SNPEFF_AMINO_ACID_CHANGE=L36F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5220965_5221930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51V1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321255    GT:AD:DP:GQ:PL    0/1:50,56:106:99:1545,0,1381
11    5222021    rs74882018    T    TA    208.18    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.524;DB;DP=35;FS=2.706;HRun=8;HaplotypeScore=100.792;IndelType=I;MQ=59.34;MQ0=0;MQRankSum=0.529;QD=5.95;ReadPosRankSum=1.861;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321255    GT:AD:DP:GQ:PL    0/1:25,10:35:99:247,0,531
11    5247791    rs10768683    C    G    881.73    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=0.407;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=59.65;MQ0=0;MQRankSum=-0.805;QD=16.64;ReadPosRankSum=0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380315    GT:AD:DP:GQ:PL    0/1:23,30:53:99:912,0,717
11    5248243    rs713040    A    G    285.58    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=33;Dels=0.0;FS=7.061;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.992;QD=8.65;ReadPosRankSum=-0.873;SNPEFF_AMINO_ACID_CHANGE=H3;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5248160_5248427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335295    GT:AD:DP:GQ:PL    0/1:21,11:33:99:316,0,713
11    5269343    rs916111    T    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380256    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    5269511    .    C    T    74.76    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.59;DP=27;Dels=0.0;FS=8.403;HRun=1;HaplotypeScore=0.734;MQ=48.83;MQ0=0;MQRankSum=-1.404;QD=2.77;ReadPosRankSum=-2.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380256    GT:AD:DP:GQ:PL    0/1:22,5:27:99:105,0,809
11    5269572    .    A    C    243.65    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=2.49;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9933;MQ=48.93;MQ0=0;MQRankSum=-2.597;QD=5.3;ReadPosRankSum=2.25;SNPEFF_AMINO_ACID_CHANGE=I153M;SNPEFF_CODON_CHANGE=atT/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5269554_5269628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380256    GT:AD:DP:GQ:PL    0/1:36,10:46:99:274,0,1165
11    5269799    rs28440105    A    C    429.87    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9562;MQ=29.34;MQ0=13;MQRankSum=0.193;QD=13.87;ReadPosRankSum=1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336906    GT:AD:DP:GQ:PL    1/1:9,22:31:11.68:462,12,0
11    5269806    rs28379094    C    T    138.19    MQFilter40    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=31.97;MQ0=10;MQRankSum=0.754;QD=5.12;ReadPosRankSum=1.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336906    GT:AD:DP:GQ:PL    0/1:19,8:27:99:168,0,289
11    5269931    rs2187608    G    C    37.97    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=0.736;QD=12.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336906    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:68,0,30
11    5270418    rs11036455    A    G    75.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=19.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336906    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
11    5270539    rs111624259    C    A    63.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.96;MQ0=1;QD=12.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336906    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:95,9,0
11    5274452    rs34879481    G    GT    359.73    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.439;DB;DP=27;FS=0.0;HRun=3;HaplotypeScore=60.0427;IndelType=I;MQ=44.68;MQ0=0;MQRankSum=-1.833;QD=12.85;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380247    GT:AD:DP:GQ:PL    0/1:17,11:27:99:399,0,623
11    5274717    rs2070972    A    C    192.85    MQFilter40    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=23.63;MQ0=6;MQRankSum=-1.099;QD=10.15;ReadPosRankSum=2.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336906    GT:AD:DP:GQ:PL    0/1:6,13:19:72.93:223,0,73
11    5275802    rs141669845    G    A    198.49    MQFilter40;QDFilter2    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.516;DB;DP=243;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5572;MQ=7.5;MQ0=211;MQRankSum=-0.476;QD=0.82;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336906    GT:AD:DP:GQ:PL    0/1:116,126:243:99:228,0,101
11    5276282    rs113622787    A    G    48.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380252    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    5289896    rs3061750    A    AAAAC    3210.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.0;HRun=0;HaplotypeScore=250.7578;IndelType=I;MQ=57.71;MQ0=0;QD=43.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396895    GT:AD:DP:GQ:PL    1/1:27,46:74:99:3253,144,0
11    5322737    rs10837771    A    G    962.33    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.971;DB;DP=61;Dels=0.0;FS=3.798;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=0.928;QD=15.78;ReadPosRankSum=0.667;SNPEFF_AMINO_ACID_CHANGE=M147T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5322244_5323226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380224    GT:AD:DP:GQ:PL    0/1:27,34:61:99:992,0,626
11    5323071    rs7118113    C    T    876.67    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.69;DB;DP=65;Dels=0.0;FS=6.641;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.44;QD=13.49;ReadPosRankSum=-0.781;SNPEFF_AMINO_ACID_CHANGE=V36I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5322244_5323226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380224    GT:AD:DP:GQ:PL    0/1:34,31:65:99:907,0,1124
11    5344423    rs7951549    T    A    44.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328813    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:75,0,24
11    5344499    rs7934005    C    T    57.53    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=8.22;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328813    GT:AD:DP:GQ:PL    0/1:3,4:7:87.52:88,0,94
11    5344552    rs7934105    C    T    142.33    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=13;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=1.7845;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.95;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    0/1:7,6:13:99:172,0,222
11    5344561    rs7933257    G    A    135.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.226;DB;DP=14;Dels=0.0;FS=7.83;HRun=0;HaplotypeScore=1.7845;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=9.71;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    0/1:8,6:14:99:166,0,278
11    5344772    rs10742622    T    C    294.77    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.59;DB;DP=29;Dels=0.0;FS=1.52;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.598;QD=10.16;ReadPosRankSum=-1.173;SNPEFF_AMINO_ACID_CHANGE=T252;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5344541_5345582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328813    GT:AD:DP:GQ:PL    0/1:17,12:29:99:325,0,605
11    5344847    rs10768793    A    G    239.91    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.535;DB;DP=23;Dels=0.0;FS=2.143;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.094;QD=10.43;ReadPosRankSum=-1.354;SNPEFF_AMINO_ACID_CHANGE=A227;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5344541_5345582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328813    GT:AD:DP:GQ:PL    0/1:14,9:23:99:270,0,470
11    5344902    rs7937237    C    G    353.02    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=27;Dels=0.0;FS=1.51;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=13.07;ReadPosRankSum=-0.946;SNPEFF_AMINO_ACID_CHANGE=C209S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5344541_5345582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328813    GT:AD:DP:GQ:PL    0/1:14,13:27:99:383,0,459
11    5345128    rs10837814    G    A    500.74    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=2.052;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.684;QD=9.45;ReadPosRankSum=0.893;SNPEFF_AMINO_ACID_CHANGE=L134F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5344541_5345582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328813    GT:AD:DP:GQ:PL    0/1:34,19:53:99:531,0,977
11    5345170    rs7952293    A    G    428.48    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.799;QD=9.12;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=C120R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5344541_5345582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328813    GT:AD:DP:GQ:PL    0/1:29,18:47:99:458,0,1024
11    5345486    rs4910750    G    A    350.87    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.341;DB;DP=25;Dels=0.0;FS=1.707;HRun=3;HaplotypeScore=2.5565;MQ=60.0;MQ0=0;MQRankSum=1.232;QD=14.03;ReadPosRankSum=-0.356;SNPEFF_AMINO_ACID_CHANGE=G14;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5344541_5345582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328813    GT:AD:DP:GQ:PL    0/1:11,14:25:99:381,0,282
11    5364295    rs12273630    C    T    1029.92    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.436;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9916;MQ=59.67;MQ0=0;MQRankSum=-0.614;QD=14.71;ReadPosRankSum=1.583;SNPEFF_AMINO_ACID_CHANGE=V154I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5363744_5364809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300773    GT:AD:DP:GQ:PL    0/1:35,34:70:99:1060,0,1076
11    5364431    rs58233587    G    A    513.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=42;Dels=0.0;FS=1.356;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.597;QD=12.22;ReadPosRankSum=0.597;SNPEFF_AMINO_ACID_CHANGE=L108;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5363744_5364809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300773    GT:AD:DP:GQ:PL    0/1:24,18:42:99:543,0,783
11    5364476    rs61738485    C    T    329.64    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.217;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.958;QD=13.19;ReadPosRankSum=1.122;SNPEFF_AMINO_ACID_CHANGE=A93;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5363744_5364809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300773    GT:AD:DP:GQ:PL    0/1:14,11:25:99:360,0,444
11    5364493    rs57900141    T    C    300.77    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=25;Dels=0.0;FS=1.58;HRun=3;HaplotypeScore=0.9894;MQ=55.21;MQ0=0;MQRankSum=-2.04;QD=12.03;ReadPosRankSum=-0.462;SNPEFF_AMINO_ACID_CHANGE=R88G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5363744_5364809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300773    GT:AD:DP:GQ:PL    0/1:12,13:25:99:331,0,407
11    5364522    rs57273781    G    T    241.37    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=24;Dels=0.0;FS=1.569;HRun=1;HaplotypeScore=1.3302;MQ=52.87;MQ0=0;MQRankSum=-1.506;QD=10.06;ReadPosRankSum=-0.406;SNPEFF_AMINO_ACID_CHANGE=T78K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5363744_5364809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300773    GT:AD:DP:GQ:PL    0/1:13,11:24:99:271,0,390
11    5364541    rs147062602    CCAGCCCCAGGTCTGTGG    C    635.82    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=348.3303;IndelType=D;MQ=54.13;MQ0=0;MQRankSum=-0.543;QD=28.9;ReadPosRankSum=-0.543;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_5363744_5364809;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000300773    GT:AD:DP:GQ:PL    0/1:15,7:22:99:675,0,2480
11    5364742    rs11036913    C    T    388.36    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.979;DB;DP=36;Dels=0.0;FS=1.459;HRun=0;HaplotypeScore=0.7887;MQ=56.04;MQ0=0;MQRankSum=0.824;QD=10.79;ReadPosRankSum=0.095;SNPEFF_AMINO_ACID_CHANGE=G5S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5363744_5364809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300773    GT:AD:DP:GQ:PL    0/1:19,17:36:99:418,0,489
11    5364776    rs78253695    T    TGTC    318.19    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=18;FS=3.01;HRun=0;HaplotypeScore=85.0491;IndelType=I;MQ=53.23;MQ0=0;MQRankSum=-0.271;QD=17.68;ReadPosRankSum=1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    0/1:13,5:18:99:357,0,429
11    5373713    rs12802177    A    T    1450.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51B6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380219    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1484,108,0
11    5410334    rs7935520    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    5410339    rs7935524    G    A    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    5410934    rs1498467    T    G    5886.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5295;MQ=59.62;MQ0=0;QD=34.63;SNPEFF_AMINO_ACID_CHANGE=H102Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5410607_5411664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328611    GT:AD:DP:GQ:PL    1/1:0,170:170:99:5887,433,0
11    5411031    rs1498468    C    T    6330.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=195;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.59;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=L135F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5410607_5411664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328611    GT:AD:DP:GQ:PL    1/1:0,195:195:99:6331,503,0
11    5411239    rs1498469    T    C    4244.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.51;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=I204T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5410607_5411664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328611    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4245,325,0
11    5411395    rs9783355    C    A    3145.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.5;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=P256H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5410607_5411664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328611    GT:AD:DP:GQ:PL    1/1:0,92:93:99:3178,235,0
11    5411579    rs57901682    G    A    1577.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=28.68;SNPEFF_AMINO_ACID_CHANGE=K317;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5410607_5411664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51M1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328611    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1611,129,0
11    5411580    rs10768907    T    C    1610.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=30.39;SNPEFF_AMINO_ACID_CHANGE=F318L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5410607_5411664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328611    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1644,129,0
11    5411744    rs7395908    G    T    270.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=33.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328611    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:303,24,0
11    5411796    rs7395910    G    C    52.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328611    GT:AD:DP:GQ:PL    1/1:0,3:3:9:85,9,0
11    5423775    rs7481498    G    A    704.24    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=2.497;DB;DP=58;Dels=0.0;FS=4.256;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.016;QD=12.14;ReadPosRankSum=-0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    0/1:33,25:58:99:734,0,983
11    5423868    rs2647583    T    A    1127.98    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.7;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=59.54;MQ0=0;MQRankSum=-0.164;QD=12.53;ReadPosRankSum=1.726;SNPEFF_AMINO_ACID_CHANGE=T14;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:55,35:90:99:1158,0,1778
11    5423931    rs2736526    C    T    1160.51    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DB;DP=103;Dels=0.0;FS=3.849;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.511;QD=11.27;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=S35;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:60,42:103:99:1191,0,2026
11    5424125    rs1909261    G    A    1556.51    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3233;MQ=59.05;MQ0=0;MQRankSum=-0.028;QD=16.74;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=C100Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:42,50:93:99:1587,0,1342
11    5424170    rs2647582    C    T    1432.36    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.014;DB;DP=92;Dels=0.0;FS=1.805;HRun=0;HaplotypeScore=0.6651;MQ=59.04;MQ0=0;MQRankSum=0.27;QD=15.57;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=A115V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1462,0,1490
11    5424232    rs1909260    C    T    1312.96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=108;Dels=0.0;FS=6.215;HRun=0;HaplotypeScore=0.6651;MQ=59.14;MQ0=0;MQRankSum=0.686;QD=12.16;ReadPosRankSum=1.13;SNPEFF_AMINO_ACID_CHANGE=H136Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:60,48:108:99:1343,0,1659
11    5424387    rs113047337    T    TTATC    4029.25    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.609;DB;DP=138;FS=0.662;HRun=0;HaplotypeScore=494.545;IndelType=I;MQ=58.19;MQ0=0;MQRankSum=0.081;QD=29.2;ReadPosRankSum=-0.65;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:82,54:138:99:4029,0,3273
11    5424504    rs872163    T    C    600.67    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.623;DB;DP=110;Dels=0.0;FS=3.907;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-1.418;QD=5.46;ReadPosRankSum=-0.105;SNPEFF_AMINO_ACID_CHANGE=T226;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:74,36:110:99:631,0,2345
11    5424507    rs872164    A    G    644.71    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.014;DB;DP=105;Dels=0.0;FS=1.728;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.484;QD=6.14;ReadPosRankSum=-0.018;SNPEFF_AMINO_ACID_CHANGE=V227;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:71,34:105:99:675,0,2251
11    5424532    rs872165    A    C    889.08    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.105;DB;DP=94;Dels=0.0;FS=0.83;HRun=0;HaplotypeScore=1.7465;MQ=59.26;MQ0=0;MQRankSum=-0.203;QD=9.46;ReadPosRankSum=0.323;SNPEFF_AMINO_ACID_CHANGE=R236;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:62,32:94:99:919,0,1990
11    5424552    rs872166    A    G    879.86    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8914;MQ=58.74;MQ0=0;MQRankSum=-0.053;QD=9.56;ReadPosRankSum=1.234;SNPEFF_AMINO_ACID_CHANGE=T242;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5423827_5424777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:60,32:92:99:910,0,1923
11    5424861    rs2647581    G    A    604.19    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.108;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.108;QD=13.43;ReadPosRankSum=0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332043    GT:AD:DP:GQ:PL    0/1:25,20:45:99:634,0,849
11    5451761    rs2340653    G    A    297.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317283    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
11    5451875    rs1498474    G    A    2338.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=36.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317283    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2371,175,0
11    5461991    rs1498486    C    A    1149.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=A249S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5461800_5462714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321307    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1182,90,0
11    5462905    rs1498487    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    5474838    rs2030094    G    T    997.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=G40;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5474638_5475707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51I2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341449    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1030,81,0
11    5475431    rs35301588    T    TCA    3529.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.0;HRun=0;HaplotypeScore=165.8891;IndelType=I;MQ=61.29;MQ0=0;QD=51.9;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_5474638_5475707;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51I2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000341449    GT:AD:DP:GQ:PL    1/1:3,65:68:99:3529,196,0
11    5475597    rs11037503    C    T    2147.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.77;DB;DP=79;Dels=0.0;FS=3.554;HRun=0;HaplotypeScore=2.8247;MQ=59.18;MQ0=0;MQRankSum=0.096;QD=27.18;ReadPosRankSum=-1.155;SNPEFF_AMINO_ACID_CHANGE=S293;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5474638_5475707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR51I2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341449    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2180,142,0
11    5490182    rs17297010    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    5509748    rs402182    A    G    921.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:955,72,0
11    5509821    rs393725    T    C    1036.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:1069,78,0
11    5510284    rs417425    A    G    1424.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=S116;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5509915_5510979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322641    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1457,117,0
11    5510341    rs404280    C    T    2485.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=36.56;SNPEFF_AMINO_ACID_CHANGE=Y135;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5509915_5510979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322641    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2519,190,0
11    5510497    rs2467219    T    C    2942.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=I187;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5509915_5510979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322641    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2975,238,0
11    5510626    rs444878    T    C    2499.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=H230;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5509915_5510979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322641    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2533,187,0
11    5510688    rs7101919    T    C    2376.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.35;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=I251T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5509915_5510979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322641    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2409,184,0
11    5510928    rs392296    G    A    404.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380237    GT:AD:DP:GQ:PL    1/1:0,13:13:36.08:437,36,0
11    5511003    rs426886    G    A    263.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322641    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:297,24,0
11    5528918    rs2227271    C    T    2696.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_AMINO_ACID_CHANGE=R624Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5528530_5530824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311659    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2730,199,0
11    5529139    rs2234456    T    C    778.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=27.79;SNPEFF_AMINO_ACID_CHANGE=A550;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5528530_5530824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311659    GT:AD:DP:GQ:PL    1/1:0,28:28:66.18:811,66,0
11    5529865    rs186434    G    A    1305.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=32.64;SNPEFF_AMINO_ACID_CHANGE=S308;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5528530_5530824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311659    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1339,102,0
11    5536537    rs393044    A    C    1847.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_AMINO_ACID_CHANGE=W164G;SNPEFF_CODON_CHANGE=Tgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5536244_5536638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLNL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538889    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1881,150,0
11    5536848    rs2017433    G    A    1418.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.32;SNPEFF_AMINO_ACID_CHANGE=A275V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5535623_5537935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBQLNL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380184    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1451,111,0
11    5566030    rs1995158    A    G    1554.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=C242R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5565719_5566779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322653    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1587,126,0
11    5566365    rs1566275    T    C    1492.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=H130R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5565719_5566779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322653    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1525,117,0
11    5572816    rs401426    T    C    137.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:170,12,0
11    5572966    rs423501    A    G    561.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.542;DB;DP=18;Dels=0.0;FS=4.102;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.385;QD=31.19;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:1,17:18:8.16:593,8,0
11    5573024    rs60009475    A    G    403.96    PASS    AB=0.067;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.273;QD=26.93;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    0/1:1,14:15:3.11:433,0,3
11    5573044    rs9666981    A    G    403.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:436,33,0
11    5573054    rs9666982    A    G    511.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:545,42,0
11    5573073    rs1694674    A    G    459.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:493,36,0
11    5573160    rs401835    G    C    257.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:290,21,0
11    5602438    rs2341432    T    A    861.85    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.615;DB;DP=60;Dels=0.0;FS=3.586;HRun=0;HaplotypeScore=0.9159;MQ=59.62;MQ0=0;MQRankSum=-0.159;QD=14.36;ReadPosRankSum=-1.948;SNPEFF_AMINO_ACID_CHANGE=L111H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5602107_5603114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52B6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345043    GT:AD:DP:GQ:PL    0/1:31,29:60:99:892,0,1019
11    5602615    rs2341434    A    G    2070.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=156;Dels=0.0;FS=0.587;HRun=0;HaplotypeScore=1.8888;MQ=59.85;MQ0=0;MQRankSum=0.574;QD=13.27;ReadPosRankSum=1.813;SNPEFF_AMINO_ACID_CHANGE=H170R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5602107_5603114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52B6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345043    GT:AD:DP:GQ:PL    0/1:78,78:156:99:2101,0,2336
11    5602679    rs892336    T    C    1827.42    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=2.164;DB;DP=140;Dels=0.0;FS=1.369;HRun=0;HaplotypeScore=3.7784;MQ=59.67;MQ0=0;MQRankSum=1.196;QD=13.05;ReadPosRankSum=-0.576;SNPEFF_AMINO_ACID_CHANGE=N191;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5602107_5603114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52B6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345043    GT:AD:DP:GQ:PL    0/1:77,62:140:99:1857,0,2443
11    5602790    rs2163946    A    G    1415.69    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=101;Dels=0.0;FS=1.649;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-1.781;QD=14.02;ReadPosRankSum=-0.081;SNPEFF_AMINO_ACID_CHANGE=L228;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5602107_5603114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52B6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345043    GT:AD:DP:GQ:PL    0/1:56,45:101:99:1446,0,1826
11    5602928    rs10838375    G    C    1197.07    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=5.118;DB;DP=95;Dels=0.0;FS=2.755;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.68;QD=12.6;ReadPosRankSum=1.16;SNPEFF_AMINO_ACID_CHANGE=A274;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5602107_5603114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52B6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345043    GT:AD:DP:GQ:PL    0/1:53,42:95:99:1227,0,1426
11    5602968    rs10769086    G    A    3288.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.362;MQ=59.75;MQ0=0;QD=35.74;SNPEFF_AMINO_ACID_CHANGE=V288I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5602107_5603114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52B6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345043    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3288,250,0
11    5603163    rs10838377    G    A    377.84    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=18;Dels=0.0;FS=8.625;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=20.99;ReadPosRankSum=1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52B6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345043    GT:AD:DP:GQ:PL    0/1:7,11:18:99:408,0,164
11    5617987    rs12272467    G    A    190.55    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=12.7;ReadPosRankSum=-1.215;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_5617946_5618144;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337072    GT:AD:DP:GQ:PL    0/1:8,7:15:99:221,0,209
11    5625603    rs7108470    A    G    856.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,29:29:78.19:890,78,0
11    5625713    rs10769118    C    A    1593.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.615;DB;DP=110;Dels=0.0;FS=6.075;HRun=1;HaplotypeScore=1.6006;MQ=59.79;MQ0=0;MQRankSum=0.785;QD=14.49;ReadPosRankSum=1.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    0/1:55,55:110:99:1624,0,1758
11    5625847    rs3751006    A    G    3728.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7128;MQ=59.38;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=K143;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5625764_5625859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380107    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3729,289,0
11    5626500    rs11038307    C    T    1064.99    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.155;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.793;QD=12.83;ReadPosRankSum=-0.812;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    0/1:42,40:83:99:1095,0,1355
11    5626899    rs3763881    G    A    195.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9832;MQ=56.62;MQ0=0;QD=27.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:229,18,0
11    5631622    rs7125403    G    T    806.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424369    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:840,69,0
11    5632212    rs10769124    G    A    1897.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_AMINO_ACID_CHANGE=L194;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5632007_5634182;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445329    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1930,147,0
11    5632681    rs72882004    T    C    178.65    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.619;QD=9.4;ReadPosRankSum=0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424369    GT:AD:DP:GQ:PL    0/1:11,8:19:99:209,0,404
11    5652973    rs2342381    G    A    1087.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,32:32:87.19:1120,87,0
11    5655150    rs7941976    T    A    1411.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1445,108,0
11    5655233    rs3824951    G    A    120.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.429;QD=7.52;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    0/1:10,5:16:99:150,0,337
11    5662319    rs7108834    C    T    209.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380259    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:242,21,0
11    5663920    rs66637086    CT    C    366.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=5;HaplotypeScore=32.8267;IndelType=D;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491385    GT:AD:DP:GQ:PL    1/1:1,12:13:36.10:409,36,0
11    5664831    rs3740998    C    A    1989.50    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=132;Dels=0.0;FS=2.49;HRun=0;HaplotypeScore=0.9916;MQ=59.65;MQ0=0;MQRankSum=-1.573;QD=15.07;ReadPosRankSum=-1.329;SNPEFF_AMINO_ACID_CHANGE=G453;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5664374_5665628;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429814    GT:AD:DP:GQ:PL    0/1:63,69:132:99:2019,0,2085
11    5664974    rs7109861    T    C    3684.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.812;MQ=59.81;MQ0=0;QD=30.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491385    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3685,301,0
11    5687320    rs35734937    T    TA    128.33    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=1.116;DB;DP=46;FS=1.971;HRun=17;HaplotypeScore=302.3941;IndelType=I;MQ=53.03;MQ0=0;MQRankSum=-1.116;QD=2.79;ReadPosRankSum=-2.561;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_5687211_5687323;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000396853    GT:AD:DP:GQ:PL    0/1:27,13:46:96.48:167,0,96
11    5687562    rs10769167    G    C    210.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.299;QD=11.69;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305836    GT:AD:DP:GQ:PL    0/1:9,9:18:99:241,0,261
11    5700340    rs3740995    T    C    2138.84    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.167;DB;DP=164;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9849;MQ=59.86;MQ0=0;MQRankSum=0.637;QD=13.04;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=L159;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5700304_5700399;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305836    GT:AD:DP:GQ:PL    0/1:88,76:164:99:2169,0,2575
11    5700649    rs10769175    A    G    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.36;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419850    GT:AD:DP:GQ:PL    0/1:2,2:4:65.07:71,0,65
11    5701281    rs3740996    G    A    976.53    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=58;Dels=0.0;FS=2.297;HRun=0;HaplotypeScore=0.9832;MQ=59.6;MQ0=0;MQRankSum=0.126;QD=16.84;ReadPosRankSum=-0.612;SNPEFF_AMINO_ACID_CHANGE=H43Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5700991_5701468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305836    GT:AD:DP:GQ:PL    0/1:25,33:58:99:1007,0,810
11    5701409    rs3824949    G    C    1046.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465634    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1079,81,0
11    5717762    rs10838543    T    C    631.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.456;DB;DP=42;Dels=0.0;FS=4.575;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.691;QD=15.03;ReadPosRankSum=0.17;SNPEFF_AMINO_ACID_CHANGE=H100;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5717397_5717885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379965    GT:AD:DP:GQ:PL    0/1:21,21:42:99:661,0,517
11    5718517    rs7935564    G    A    536.88    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.965;DB;DP=36;Dels=0.0;FS=1.331;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.204;QD=14.91;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=D155N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5718478_5718573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379965    GT:AD:DP:GQ:PL    0/1:17,19:36:99:567,0,404
11    5719485    rs117064750    C    T    507.46    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.121;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.362;QD=14.5;ReadPosRankSum=1.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460454    GT:AD:DP:GQ:PL    0/1:19,16:35:99:537,0,638
11    5719667    rs2291842    T    C    771.43    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.6;MQ0=0;MQRankSum=-2.033;QD=13.53;ReadPosRankSum=-1.099;SNPEFF_AMINO_ACID_CHANGE=D136;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5719599_5719775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455293    GT:AD:DP:GQ:PL    0/1:29,28:57:99:801,0,892
11    5719848    rs7950912    C    T    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414641    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    5729945    rs147476276    TC    T    45.43    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=147.5653;IndelType=D;MQ=49.64;MQ0=0;MQRankSum=0.747;QD=4.13;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379965    GT:AD:DP:GQ:PL    0/1:6,5:11:9.78:84,0,10
11    5730248    rs999295    A    G    61.25    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.95;MQ0=0;MQRankSum=-0.231;QD=4.38;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379965    GT:AD:DP:GQ:PL    0/1:10,4:14:91.24:91,0,278
11    5730343    rs12364019    G    A    533.84    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.337;DB;DP=49;Dels=0.0;FS=1.269;HRun=1;HaplotypeScore=2.5634;MQ=59.05;MQ0=0;MQRankSum=0.332;QD=10.89;ReadPosRankSum=-2.0;SNPEFF_AMINO_ACID_CHANGE=R132K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5730283_5731033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545338    GT:AD:DP:GQ:PL    0/1:27,22:49:99:564,0,851
11    5757493    rs34772298    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM22;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    5757785    rs12792180    C    T    1407.97    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.56;DB;DP=93;Dels=0.0;FS=3.886;HRun=1;HaplotypeScore=0.8941;MQ=59.8;MQ0=0;MQRankSum=-0.782;QD=15.14;ReadPosRankSum=0.528;SNPEFF_AMINO_ACID_CHANGE=S13;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5757681_5758768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR56B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317121    GT:AD:DP:GQ:PL    0/1:43,50:93:99:1438,0,1243
11    5758062    rs7397032    T    C    365.21    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.811;QD=8.7;ReadPosRankSum=-2.047;SNPEFF_AMINO_ACID_CHANGE=C106R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5757681_5758768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR56B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317121    GT:AD:DP:GQ:PL    0/1:27,15:42:99:395,0,963
11    5758118    rs7396766    A    C    1788.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=L124;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5757681_5758768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR56B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317121    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1821,135,0
11    5758833    rs7928052    T    C    233.51    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=21.23;ReadPosRankSum=1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR56B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317121    GT:AD:DP:GQ:PL    0/1:4,7:11:99:264,0,127
11    5771697    rs12222371    C    T    34.45    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=-1.398;QD=3.13;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380027    GT:AD:DP:GQ:PL    0/1:7,4:11:64.44:64,0,260
11    5775757    rs7396868    T    A    168.98    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.466;QD=15.36;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380027    GT:AD:DP:GQ:PL    0/1:5,6:11:99:199,0,167
11    5776287    rs7936512    C    T    2474.63    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.861;DB;DP=185;Dels=0.0;FS=2.642;HRun=0;HaplotypeScore=4.5389;MQ=59.63;MQ0=0;MQRankSum=0.02;QD=13.38;ReadPosRankSum=1.581;SNPEFF_AMINO_ACID_CHANGE=T106I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5775923_5776959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317254    GT:AD:DP:GQ:PL    0/1:101,84:185:99:2505,0,3061
11    5776470    rs7394584    T    G    1826.54    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.94;DB;DP=170;Dels=0.0;FS=2.802;HRun=0;HaplotypeScore=1.7608;MQ=59.73;MQ0=0;MQRankSum=-1.456;QD=10.74;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=L167R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5775923_5776959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317254    GT:AD:DP:GQ:PL    0/1:104,66:170:99:1857,0,3481
11    5776484    rs4910844    A    T    1817.91    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=169;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4248;MQ=59.73;MQ0=0;MQRankSum=0.397;QD=10.76;ReadPosRankSum=-0.933;SNPEFF_AMINO_ACID_CHANGE=R172*;SNPEFF_CODON_CHANGE=Aga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_5775923_5776959;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000317254    GT:AD:DP:GQ:PL    0/1:103,65:169:99:1848,0,3466
11    5776623    rs7396938    A    T    1737.72    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=132;Dels=0.0;FS=1.543;HRun=0;HaplotypeScore=1.7825;MQ=59.3;MQ0=0;MQRankSum=-0.816;QD=13.16;ReadPosRankSum=-0.323;SNPEFF_AMINO_ACID_CHANGE=N218I;SNPEFF_CODON_CHANGE=aAc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5775923_5776959;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317254    GT:AD:DP:GQ:PL    0/1:73,58:132:99:1768,0,2176
11    5777023    rs10742782    C    T    954.52    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.18;DB;DP=58;Dels=0.0;FS=6.108;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.806;QD=16.46;ReadPosRankSum=-1.759;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317254    GT:AD:DP:GQ:PL    0/1:26,32:58:99:985,0,827
11    5777053    rs10742783    A    G    542.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.551;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=19.39;ReadPosRankSum=2.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317254    GT:AD:DP:GQ:PL    0/1:12,16:28:99:573,0,396
11    5809308    rs7934670    A    T    69.90    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.509;DB;DP=29;Dels=0.0;FS=20.498;HRun=0;HaplotypeScore=0.0;MQ=53.28;MQ0=0;MQRankSum=-2.635;QD=2.41;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=F247I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5809084_5810046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317078    GT:AD:DP:GQ:PL    0/1:17,12:29:99:100,0,593
11    5809477    rs10838637    A    G    799.30    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.661;DB;DP=66;Dels=0.0;FS=6.614;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.776;QD=12.11;ReadPosRankSum=0.969;SNPEFF_AMINO_ACID_CHANGE=S190;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5809084_5810046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317078    GT:AD:DP:GQ:PL    0/1:34,32:66:99:829,0,1050
11    5809673    rs10769224    C    T    1134.37    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.87;DB;DP=73;Dels=0.0;FS=3.169;HRun=0;HaplotypeScore=1.9891;MQ=59.68;MQ0=0;MQRankSum=1.266;QD=15.54;ReadPosRankSum=0.028;SNPEFF_AMINO_ACID_CHANGE=C125Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5809084_5810046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317078    GT:AD:DP:GQ:PL    0/1:34,39:73:99:1164,0,1002
11    5809746    rs10742787    C    T    1172.84    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.405;DB;DP=80;Dels=0.0;FS=0.831;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.376;QD=14.66;ReadPosRankSum=0.472;SNPEFF_AMINO_ACID_CHANGE=A101T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5809084_5810046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317078    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1203,0,1110
11    5810080    rs10742788    T    C    247.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=13.74;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380027    GT:AD:DP:GQ:PL    0/1:9,9:18:99:277,0,315
11    5810174    rs10742789    C    T    33.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.38;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380027    GT:AD:DP:GQ:PL    0/1:2,2:4:63.52:64,0,71
11    5841856    rs4758435    C    T    1364.45    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=3.468;DB;DP=94;Dels=0.0;FS=1.705;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-1.304;QD=14.52;ReadPosRankSum=-0.383;SNPEFF_AMINO_ACID_CHANGE=N97;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5841544_5842578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317037    GT:AD:DP:GQ:PL    0/1:46,48:94:99:1394,0,1285
11    5842283    rs61875922    T    A    1372.62    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.051;DB;DP=83;Dels=0.0;FS=5.939;HRun=0;HaplotypeScore=1.9977;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=16.54;ReadPosRankSum=-0.096;SNPEFF_AMINO_ACID_CHANGE=F240I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5841544_5842578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52N2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317037    GT:AD:DP:GQ:PL    0/1:41,42:83:99:1403,0,1367
11    5862075    rs7946139    T    C    600.05    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=3.622;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=59.49;MQ0=0;MQRankSum=0.261;QD=13.33;ReadPosRankSum=0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:22,23:45:99:630,0,732
11    5862532    rs10742809    A    C    1376.29    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.885;DB;DP=118;Dels=0.0;FS=4.571;HRun=1;HaplotypeScore=1.6316;MQ=58.85;MQ0=0;MQRankSum=0.568;QD=11.66;ReadPosRankSum=-0.612;SNPEFF_AMINO_ACID_CHANGE=M199R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:69,49:118:99:1406,0,2331
11    5862653    rs4357719    T    C    1613.21    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.165;DB;DP=149;Dels=0.0;FS=6.419;HRun=0;HaplotypeScore=0.0;MQ=55.02;MQ0=0;MQRankSum=-4.834;QD=10.83;ReadPosRankSum=0.467;SNPEFF_AMINO_ACID_CHANGE=I159V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:87,62:149:99:1643,0,2875
11    5862731    rs10838719    A    G    1974.80    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.842;DB;DP=179;Dels=0.0;FS=3.533;HRun=0;HaplotypeScore=2.531;MQ=52.12;MQ0=0;MQRankSum=-7.132;QD=11.03;ReadPosRankSum=0.793;SNPEFF_AMINO_ACID_CHANGE=W133R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:101,78:179:99:2005,0,3260
11    5862780    rs4362172    T    C    1885.07    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=0.641;DB;DP=174;Dels=0.0;FS=1.235;HRun=0;HaplotypeScore=2.4805;MQ=57.46;MQ0=0;MQRankSum=-1.063;QD=10.83;ReadPosRankSum=-0.423;SNPEFF_AMINO_ACID_CHANGE=V116;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:103,71:174:99:1915,0,3121
11    5862845    rs4592451    A    G    2183.04    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.671;DB;DP=148;Dels=0.0;FS=6.082;HRun=1;HaplotypeScore=4.0543;MQ=57.82;MQ0=0;MQRankSum=-0.34;QD=14.75;ReadPosRankSum=1.454;SNPEFF_AMINO_ACID_CHANGE=S95P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:70,78:148:99:2213,0,2205
11    5862937    rs4495918    C    A    1685.10    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.595;DB;DP=131;Dels=0.0;FS=5.433;HRun=1;HaplotypeScore=0.9997;MQ=59.54;MQ0=0;MQRankSum=-0.713;QD=12.86;ReadPosRankSum=1.201;SNPEFF_AMINO_ACID_CHANGE=C64F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:73,58:131:99:1715,0,2385
11    5862984    rs10769272    G    C    1604.16    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.385;DB;DP=130;Dels=0.0;FS=2.397;HRun=0;HaplotypeScore=7.2122;MQ=59.82;MQ0=0;MQRankSum=0.926;QD=12.34;ReadPosRankSum=-0.371;SNPEFF_AMINO_ACID_CHANGE=F48L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:76,53:130:99:1634,0,2601
11    5863013    rs4362173    T    C    1866.38    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.797;DB;DP=145;Dels=0.0;FS=2.217;HRun=0;HaplotypeScore=0.9159;MQ=59.55;MQ0=0;MQRankSum=-0.275;QD=12.87;ReadPosRankSum=-2.115;SNPEFF_AMINO_ACID_CHANGE=I39V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:80,65:145:99:1896,0,2569
11    5863113    rs10742810    G    A    2587.32    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=3.709;DB;DP=183;Dels=0.0;FS=0.554;HRun=0;HaplotypeScore=1.9996;MQ=59.87;MQ0=0;MQRankSum=-0.237;QD=14.14;ReadPosRankSum=-0.834;SNPEFF_AMINO_ACID_CHANGE=N5;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5862158_5863127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329322    GT:AD:DP:GQ:PL    0/1:96,86:183:99:2617,0,2756
11    5863240    rs4417311    C    G    987.22    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.036;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=12.99;ReadPosRankSum=0.721;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380027    GT:AD:DP:GQ:PL    0/1:44,32:76:99:1017,0,1519
11    5863306    rs4363637    G    C    70.89    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.322;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.101;QD=3.22;ReadPosRankSum=-1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380027    GT:AD:DP:GQ:PL    0/1:16,6:22:99:101,0,606
11    5905344    rs7108789    C    A    73.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.45;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412903    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,147
11    5906048    rs4758168    G    A    1468.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.405;DB;DP=98;Dels=0.0;FS=0.771;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.561;QD=14.99;ReadPosRankSum=1.123;SNPEFF_AMINO_ACID_CHANGE=V176I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5905501_5906527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316987    GT:AD:DP:GQ:PL    0/1:49,49:98:99:1499,0,1397
11    5906073    rs4757986    G    T    1380.11    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=101;Dels=0.0;FS=6.469;HRun=0;HaplotypeScore=1.865;MQ=59.36;MQ0=0;MQRankSum=0.18;QD=13.66;ReadPosRankSum=-0.472;SNPEFF_AMINO_ACID_CHANGE=R184M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5905501_5906527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316987    GT:AD:DP:GQ:PL    0/1:51,50:101:99:1410,0,1619
11    5906117    rs61876191    A    G    1587.66    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.579;DB;DP=130;Dels=0.0;FS=5.729;HRun=0;HaplotypeScore=5.2923;MQ=59.18;MQ0=0;MQRankSum=-2.349;QD=12.21;ReadPosRankSum=0.82;SNPEFF_AMINO_ACID_CHANGE=I199V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5905501_5906527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316987    GT:AD:DP:GQ:PL    0/1:72,58:130:99:1618,0,2244
11    5906192    rs1453435    A    C    1755.55    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=162;Dels=0.0;FS=4.658;HRun=0;HaplotypeScore=2.8913;MQ=59.86;MQ0=0;MQRankSum=0.645;QD=10.84;ReadPosRankSum=-1.546;SNPEFF_AMINO_ACID_CHANGE=R224;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5905501_5906527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316987    GT:AD:DP:GQ:PL    0/1:91,71:162:99:1786,0,2918
11    5906205    rs4757987    G    A    1665.60    PASS    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=0.235;DB;DP=152;Dels=0.0;FS=4.89;HRun=0;HaplotypeScore=3.6914;MQ=59.85;MQ0=0;MQRankSum=0.283;QD=10.96;ReadPosRankSum=-0.246;SNPEFF_AMINO_ACID_CHANGE=R228H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_5905501_5906527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316987    GT:AD:DP:GQ:PL    0/1:87,65:152:99:1696,0,2694
11    5906571    rs2343152    C    A    233.01    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=25.89;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52E4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316987    GT:AD:DP:GQ:PL    0/1:2,7:9:55.32:263,0,55
11    5922222    rs10160336    T    C    1849.54    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=2.545;DB;DP=113;Dels=0.0;FS=2.468;HRun=1;HaplotypeScore=1.8055;MQ=59.84;MQ0=0;MQRankSum=0.163;QD=16.37;ReadPosRankSum=0.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412903    GT:AD:DP:GQ:PL    0/1:51,62:113:99:1880,0,1550
11    5922707    rs7106300    C    T    3713.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412903    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3713,283,0
11    5923297    rs4601752    A    G    1210.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412903    GT:AD:DP:GQ:PL    1/1:0,39:39:93.30:1243,93,0
11    5989223    rs61730422    G    A    1699.71    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=4.024;DB;DP=108;Dels=0.0;FS=5.032;HRun=1;HaplotypeScore=0.7887;MQ=59.79;MQ0=0;MQRankSum=0.147;QD=15.74;ReadPosRankSum=-0.372;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-451K18.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340110    GT:AD:DP:GQ:PL    0/1:51,57:108:99:1730,0,1455
11    5989293    rs7113548    G    A    1710.22    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.487;DB;DP=118;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=1.8737;MQ=60.0;MQ0=0;MQRankSum=1.181;QD=14.49;ReadPosRankSum=1.586;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-451K18.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340110    GT:AD:DP:GQ:PL    0/1:63,55:118:99:1740,0,1719
11    5989415    rs7114672    C    T    1697.83    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.039;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.59;MQ0=0;MQRankSum=-0.259;QD=17.32;ReadPosRankSum=0.555;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-451K18.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340110    GT:AD:DP:GQ:PL    0/1:41,57:98:99:1728,0,1253
11    6007272    rs4237768    A    G    817.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.92;DB;DP=63;Dels=0.0;FS=19.421;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.491;QD=12.98;ReadPosRankSum=-1.432;SNPEFF_AMINO_ACID_CHANGE=W297R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6007122_6008215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332249    GT:AD:DP:GQ:PL    0/1:35,28:63:99:848,0,1219
11    6007613    rs4354673    T    G    2210.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.764;DB;DP=169;Dels=0.0;FS=0.582;HRun=0;HaplotypeScore=3.6849;MQ=57.76;MQ0=0;MQRankSum=1.121;QD=13.08;ReadPosRankSum=-0.03;SNPEFF_AMINO_ACID_CHANGE=K183T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6007122_6008215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332249    GT:AD:DP:GQ:PL    0/1:91,78:169:99:2241,0,2690
11    6007680    rs4436524    A    G    1715.74    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.459;DB;DP=140;Dels=0.0;FS=0.668;HRun=0;HaplotypeScore=2.3046;MQ=56.34;MQ0=1;MQRankSum=-1.89;QD=12.26;ReadPosRankSum=2.45;SNPEFF_AMINO_ACID_CHANGE=C161R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6007122_6008215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332249    GT:AD:DP:GQ:PL    0/1:76,63:140:99:1746,0,2166
11    6007743    rs4436525    A    G    816.44    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.228;DB;DP=88;Dels=0.0;FS=4.388;HRun=0;HaplotypeScore=1.8914;MQ=52.72;MQ0=2;MQRankSum=-5.291;QD=9.28;ReadPosRankSum=-0.263;SNPEFF_AMINO_ACID_CHANGE=C140R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6007122_6008215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332249    GT:AD:DP:GQ:PL    0/1:51,37:88:99:846,0,1717
11    6023581    rs11040248    A    G    646.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.384;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=59.48;MQ0=0;MQRankSum=1.283;QD=14.7;ReadPosRankSum=1.258;SNPEFF_AMINO_ACID_CHANGE=L266;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6023216_6024424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR56A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330728    GT:AD:DP:GQ:PL    0/1:22,22:44:99:677,0,723
11    6023640    rs11040249    T    C    556.46    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=46;Dels=0.0;FS=6.473;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.717;QD=12.1;ReadPosRankSum=-0.762;SNPEFF_AMINO_ACID_CHANGE=I247V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6023216_6024424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR56A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330728    GT:AD:DP:GQ:PL    0/1:24,22:46:99:586,0,702
11    6023818    rs10839221    G    A    735.60    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.605;DB;DP=46;Dels=0.0;FS=1.164;HRun=0;HaplotypeScore=0.9332;MQ=59.59;MQ0=0;MQRankSum=-0.794;QD=15.99;ReadPosRankSum=-0.344;SNPEFF_AMINO_ACID_CHANGE=Y187;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6023216_6024424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR56A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330728    GT:AD:DP:GQ:PL    0/1:17,29:46:99:766,0,482
11    6078394    rs5789436    T    TAA    324.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=13.4072;IndelType=I;MQ=60.0;MQ0=0;QD=54.03;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:366,18,0
11    6079001    rs4448669    G    A    3144.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3178,241,0
11    6129837    rs1462983    C    T    1834.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_AMINO_ACID_CHANGE=P277S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6128914_6130065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR56B4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316529    GT:AD:DP:GQ:PL    1/1:1,55:57:99:1868,147,0
11    6150738    rs325637    A    G    1618.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=31.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC111177.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316517    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1652,126,0
11    6150814    rs1841821    T    C    497    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC111177.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316517    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:530,45,0
11    6173364    rs325695    T    A    2276.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9512;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=N152I;SNPEFF_CODON_CHANGE=aAt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6173006_6173818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022762.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316506    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2309,184,0
11    6220376    rs325610    G    C    1639.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_6220376_6221489;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52W1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311352    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1672,126,0
11    6221169    rs10839531    A    G    4266.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.67;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=H239R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6220376_6221489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52W1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311352    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4267,358,0
11    6221214    rs11040799    T    A    7339.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=214;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5415;MQ=59.46;MQ0=0;QD=34.14;SNPEFF_AMINO_ACID_CHANGE=L254Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6220376_6221489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR52W1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311352    GT:AD:DP:GQ:PL    1/1:0,213:214:99:7339,542,0
11    6227083    rs10742968    C    T    205.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316375    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
11    6231731    rs10769671    C    T    2346.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9128;MQ=58.63;MQ0=0;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=P242S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6231080_6231878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316375    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2379,184,0
11    6238680    rs140870715    G    A    750.62    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DB;DP=45;Dels=0.0;FS=1.197;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.37;QD=16.68;ReadPosRankSum=-0.784;SNPEFF_AMINO_ACID_CHANGE=T637;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6238601_6239380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM160A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442917    GT:AD:DP:GQ:PL    0/1:17,28:45:99:781,0,489
11    6238960    rs3750943    C    A    308.95    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.198;DB;DP=22;Dels=0.0;FS=4.193;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;MQRankSum=1.154;QD=14.04;ReadPosRankSum=2.209;SNPEFF_AMINO_ACID_CHANGE=R544L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6238601_6239380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM160A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442917    GT:AD:DP:GQ:PL    0/1:12,10:22:99:339,0,346
11    6239739    rs72288900    CT    C    724.05    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=1.385;DB;DP=41;FS=0.0;HRun=2;HaplotypeScore=104.6694;IndelType=D;MQ=60.76;MQ0=0;MQRankSum=1.87;QD=17.66;ReadPosRankSum=-0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM160A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265978    GT:AD:DP:GQ:PL    0/1:18,23:41:99:763,0,602
11    6243804    rs3750945    A    G    1848.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=37.73;SNPEFF_AMINO_ACID_CHANGE=Y278;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6243672_6243839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM160A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442917    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1882,141,0
11    6243843    rs3750946    C    G    1127.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM160A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265978    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1161,87,0
11    6243963    rs3750947    G    A    1771.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.53;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM160A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265978    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1804,135,0
11    6243982    rs325606    T    G    2303.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.34;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM160A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265978    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2336,178,0
11    6281108    rs2929180    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCKBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525462    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    6281400    rs11040819    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCKBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334619    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    6291659    rs12364575    G    C    992.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCKBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525014    GT:AD:DP:GQ:PL    1/1:0,26:26:78.25:1026,78,0
11    6292838    rs10839536    G    A    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCKBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525014    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:119,9,0
11    6340525    rs12570    A    T    1974.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=35.9;SNPEFF_AMINO_ACID_CHANGE=A218;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6340176_6340794;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRKCDBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303927    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2008,153,0
11    6340706    rs1051992    A    G    701.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.95;SNPEFF_AMINO_ACID_CHANGE=L158P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6340176_6340794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRKCDBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303927    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:735,57,0
11    6341684    rs2682123    C    G    232.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.27;SNPEFF_AMINO_ACID_CHANGE=R8P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6341323_6341877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRKCDBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303927    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:266,21,0
11    6341748    rs1994519    C    T    83.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.97;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_6341323_6341877;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRKCDBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303927    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
11    6411600    rs2682090    C    G    88.48    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=12.64;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299402    GT:AD:DP:GQ:PL    0/1:1,6:7:25.61:118,0,26
11    6411935    rs1050228    T    C    487.51    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.692;DB;DP=26;Dels=0.0;FS=10.024;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=0.971;QD=18.75;ReadPosRankSum=0.194;SNPEFF_AMINO_ACID_CHANGE=V36A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6411655_6412146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299397    GT:AD:DP:GQ:PL    0/1:10,16:26:99:518,0,286
11    6412931    rs7951904    T    C    137.65    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;MQRankSum=0.244;QD=10.59;ReadPosRankSum=-1.635;SNPEFF_AMINO_ACID_CHANGE=D211;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6412617_6413386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527275    GT:AD:DP:GQ:PL    0/1:7,6:13:99:168,0,248
11    6415392    rs11601088    C    T    503.61    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=32;Dels=0.0;FS=3.851;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.083;QD=15.74;ReadPosRankSum=1.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299402    GT:AD:DP:GQ:PL    0/1:14,18:32:99:534,0,420
11    6415882    rs8164    G    A    256.51    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.289;QD=19.73;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299402    GT:AD:DP:GQ:PL    0/1:4,9:13:99:286,0,131
11    6416959    rs1800606    C    T    431.50    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.758;DB;DP=29;Dels=0.0;FS=7.832;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-1.172;QD=14.88;ReadPosRankSum=-0.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299397    GT:AD:DP:GQ:PL    0/1:15,14:29:99:461,0,464
11    6417004    rs138362420    CTAG    C    904.15    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=1.459;DB;DP=51;FS=1.275;HRun=0;HaplotypeScore=232.1074;IndelType=D;MQ=57.32;MQ0=0;MQRankSum=-1.004;QD=17.73;ReadPosRankSum=0.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299397    GT:AD:DP:GQ:PL    0/1:28,23:51:99:943,0,1535
11    6423630    rs2075583    G    C    35.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=7.03;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532020    GT:AD:DP:GQ:PL    0/1:2,3:5:51.45:65,0,51
11    6424856    rs2682093    C    T    535.40    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.481;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7129;MQ=59.58;MQ0=0;MQRankSum=-0.421;QD=9.73;ReadPosRankSum=-0.994;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299402    GT:AD:DP:GQ:PL    0/1:35,20:55:99:565,0,1032
11    6432089    rs150119080    A    C    607.61    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=41;Dels=0.0;FS=7.84;HRun=1;HaplotypeScore=0.9159;MQ=59.44;MQ0=0;MQRankSum=0.536;QD=14.82;ReadPosRankSum=0.301;SNPEFF_AMINO_ACID_CHANGE=D163E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6431857_6432591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=APBB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299402    GT:AD:DP:GQ:PL    0/1:19,22:41:99:638,0,611
11    6453332    rs17242666    T    C    115.81    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.912;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=5.26;ReadPosRankSum=1.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529775    GT:AD:DP:GQ:PL    0/1:16,6:22:99:146,0,576
11    6459375    rs117801081    C    T    190.66    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=21.18;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527105    GT:AD:DP:GQ:PL    0/1:2,7:9:59.91:221,0,60
11    6459838    rs10500670    C    T    119.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527105    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
11    6461277    rs2682099    T    A    41.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=3.21;ReadPosRankSum=-1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527105    GT:AD:DP:GQ:PL    0/1:8,5:13:71.67:72,0,292
11    6462087    rs35862450    G    A    153.90    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.2;MQ0=0;MQRankSum=1.139;QD=8.1;ReadPosRankSum=-0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265983    GT:AD:DP:GQ:PL    0/1:12,7:19:99:184,0,331
11    6471722    rs17821052    T    G    394.15    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=3.515;DB;DP=29;Dels=0.0;FS=4.151;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.631;QD=13.59;ReadPosRankSum=-1.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526845    GT:AD:DP:GQ:PL    0/1:15,14:29:99:424,0,434
11    6502636    rs11600431    G    C    158.72    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=13.23;ReadPosRankSum=0.135;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_6502461_6502666;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396777    GT:AD:DP:GQ:PL    0/1:5,7:12:99:189,0,166
11    6502727    rs11604726    C    G    114.40    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=12.175;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=9.53;ReadPosRankSum=-0.244;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254584    GT:AD:DP:GQ:PL    0/1:7,5:12:99:144,0,209
11    6502780    rs11555935    C    A    139.10    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=13;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=10.7;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=R12;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6502677_6502785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254616    GT:AD:DP:GQ:PL    0/1:8,5:13:99:169,0,219
11    6503575    rs1048121    G    A    144.44    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528908    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:174,0,21
11    6519363    rs2723645    C    G    664.01    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.089;DB;DP=81;Dels=0.0;FS=1.055;HRun=1;HaplotypeScore=0.9998;MQ=59.72;MQ0=0;MQRankSum=0.375;QD=8.2;ReadPosRankSum=-0.997;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473019    GT:AD:DP:GQ:PL    0/1:49,32:81:99:694,0,1588
11    6519642    rs11604149    G    A    1238.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=84;Dels=0.0;FS=1.981;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.532;QD=14.74;ReadPosRankSum=0.192;SNPEFF_AMINO_ACID_CHANGE=R66Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6519001_6520191;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254579    GT:AD:DP:GQ:PL    0/1:42,42:84:99:1268,0,1326
11    6520015    rs11040899    G    T    1244.97    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.795;DB;DP=77;Dels=0.0;FS=16.396;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.188;QD=16.17;ReadPosRankSum=-0.036;SNPEFF_AMINO_ACID_CHANGE=L190;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6519001_6520191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254579    GT:AD:DP:GQ:PL    0/1:38,39:77:99:1275,0,1247
11    6520164    rs2555158    T    A    598    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.858;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=14.24;ReadPosRankSum=1.725;SNPEFF_AMINO_ACID_CHANGE=V240E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6519001_6520191;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254579    GT:AD:DP:GQ:PL    0/1:22,20:42:99:628,0,739
11    6524072    rs11605196    A    C    545.18    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.906;DB;DP=43;Dels=0.0;FS=2.719;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.126;QD=12.68;ReadPosRankSum=-1.946;SNPEFF_AMINO_ACID_CHANGE=Q279P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6523983_6524156;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254579    GT:AD:DP:GQ:PL    0/1:24,19:43:99:575,0,769
11    6524253    rs11603067    C    T    60.10    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=7.51;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477562    GT:AD:DP:GQ:PL    0/1:5,3:8:90.09:90,0,176
11    6530106    rs11605607    A    G    129.66    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.428;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.55;MQ0=0;MQRankSum=0.756;QD=4.47;ReadPosRankSum=-0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473019    GT:AD:DP:GQ:PL    0/1:22,7:29:99:160,0,760
11    6532778    rs17244263    A    T    414.48    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=18.84;ReadPosRankSum=-2.013;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464330    GT:AD:DP:GQ:PL    0/1:8,14:22:99:444,0,265
11    6541225    rs11603869    C    G    1930.39    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=116;Dels=0.0;FS=4.593;HRun=0;HaplotypeScore=3.1844;MQ=59.4;MQ0=0;MQRankSum=0.091;QD=16.64;ReadPosRankSum=-0.302;SNPEFF_AMINO_ACID_CHANGE=Q560E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6541195_6541332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254579    GT:AD:DP:GQ:PL    0/1:51,65:116:99:1960,0,1504
11    6567895    rs11270441    C    CTGCCCTACTGCA    5924.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=315.2059;IndelType=I;MQ=36.22;MQ0=0;QD=151.92;SNPEFF_AMINO_ACID_CHANGE=A1909AALLH;SNPEFF_CODON_CHANGE=gct/gcTGCCCTACTGCAt;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_11_6566022_6568896;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254579    GT:AD:DP:GQ:PL    1/1:26,9:39:99:5925,111,0
11    6568213    rs58186801    T    C    129.78    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=18;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.058;QD=7.21;ReadPosRankSum=-0.289;SNPEFF_AMINO_ACID_CHANGE=M2015T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6566022_6568896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254579    GT:AD:DP:GQ:PL    0/1:8,10:18:99:160,0,275
11    6587252    rs12292436    C    G    60.89    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=15.22;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=P276R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6586925_6587995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529821    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:91,0,29
11    6588228    rs10769699    G    A    989.08    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.849;DB;DP=64;Dels=0.0;FS=0.996;HRun=0;HaplotypeScore=1.4942;MQ=59.64;MQ0=0;MQRankSum=-0.254;QD=15.45;ReadPosRankSum=-0.488;SNPEFF_AMINO_ACID_CHANGE=R3830H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6588125_6589090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254579    GT:AD:DP:GQ:PL    0/1:33,31:64:99:1019,0,957
11    6591157    rs10839585    A    G    300.12    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;MQRankSum=0.691;QD=10.72;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DNHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525080    GT:AD:DP:GQ:PL    0/1:15,13:28:99:330,0,473
11    6621516    rs11040933    G    A    1528.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530762    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1562,117,0
11    6622714    rs2288283    G    A    1556.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_AMINO_ACID_CHANGE=N194;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6622379_6622832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254605    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1590,120,0
11    6624617    rs12420389    T    C    103.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.97;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526743    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,140
11    6624898    rs2555180    G    A    37.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.39;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526743    GT:AD:DP:GQ:PL    0/1:1,2:3:14.67:67,0,15
11    6629530    rs2048092    G    A    262.67    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.133;DB;DP=28;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.653;QD=9.38;ReadPosRankSum=1.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534565    GT:AD:DP:GQ:PL    0/1:17,11:28:99:293,0,574
11    6630028    rs66487903    TC    T    1851.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=5;HaplotypeScore=208.2522;IndelType=D;MQ=59.6;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524735    GT:AD:DP:GQ:PL    1/1:3,58:61:99:1894,168,0
11    6630410    rs11826498    T    C    651.64    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.199;DB;DP=71;Dels=0.0;FS=8.686;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.123;QD=9.18;ReadPosRankSum=0.614;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524735    GT:AD:DP:GQ:PL    0/1:42,29:71:99:682,0,1527
11    6631016    rs2292195    C    T    1331.70    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.536;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.04;QD=13.45;ReadPosRankSum=0.061;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6630955_6631076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537806    GT:AD:DP:GQ:PL    0/1:50,49:99:99:1362,0,1491
11    6632450    rs12451    C    T    1204.74    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.834;DB;DP=96;Dels=0.0;FS=5.57;HRun=0;HaplotypeScore=1.6567;MQ=59.52;MQ0=0;MQRankSum=0.865;QD=12.55;ReadPosRankSum=-0.473;SNPEFF_AMINO_ACID_CHANGE=T179;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6632420_6632534;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TAF10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299424    GT:AD:DP:GQ:PL    0/1:51,45:96:99:1235,0,1480
11    6632857    rs1876300    A    T    112.15    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=16;Dels=0.0;FS=2.06;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=7.01;ReadPosRankSum=-0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299421    GT:AD:DP:GQ:PL    0/1:11,5:16:99:142,0,366
11    6636300    rs1800723    A    G    859.60    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.126;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.173;QD=17.54;ReadPosRankSum=-1.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299421    GT:AD:DP:GQ:PL    0/1:20,29:49:99:890,0,664
11    6636900    rs1800745    G    C    66.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=6.61;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299421    GT:AD:DP:GQ:PL    0/1:6,4:10:96.10:96,0,223
11    6637518    rs7943955    A    G    610.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=26.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428886    GT:AD:DP:GQ:PL    1/1:0,23:23:54.12:644,54,0
11    6638506    rs1800738    A    T    1076.21    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.124;DB;DP=60;Dels=0.0;FS=3.65;HRun=0;HaplotypeScore=1.8606;MQ=59.62;MQ0=0;MQRankSum=-0.702;QD=17.94;ReadPosRankSum=1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:24,36:60:99:1106,0,703
11    6643976    rs7122587    C    T    46.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=7.69;ReadPosRankSum=-1.537;SNPEFF_AMINO_ACID_CHANGE=Q2977;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6642556_6645621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:3,3:6:76.15:76,0,86
11    6644600    rs72911011    C    T    447.81    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.248;DB;DP=41;Dels=0.0;FS=2.747;HRun=0;HaplotypeScore=0.9997;MQ=58.62;MQ0=0;MQRankSum=2.01;QD=10.92;ReadPosRankSum=1.169;SNPEFF_AMINO_ACID_CHANGE=A2769;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6642556_6645621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:23,18:41:99:478,0,595
11    6647622    rs11827437    T    C    900.56    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.924;QD=13.85;ReadPosRankSum=0.125;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:31,34:65:99:931,0,978
11    6647931    rs34782445    C    T    1136.28    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=2.741;DB;DP=100;Dels=0.0;FS=0.827;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.505;QD=11.36;ReadPosRankSum=-1.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:57,43:100:99:1166,0,1434
11    6647978    rs4442534    C    T    1025.30    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.375;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=13.67;ReadPosRankSum=1.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1055,0,1187
11    6648424    rs4758443    G    A    626.30    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.593;DB;DP=40;Dels=0.0;FS=1.273;HRun=0;HaplotypeScore=0.6651;MQ=59.53;MQ0=0;MQRankSum=-0.775;QD=15.66;ReadPosRankSum=-0.541;SNPEFF_AMINO_ACID_CHANGE=T1949M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6648020_6648898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:19,21:40:99:656,0,471
11    6648937    rs11040937    C    T    528.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.99;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.582;QD=22.04;ReadPosRankSum=0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:8,16:24:99:559,0,194
11    6651810    rs2659872    A    G    43.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.62;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=L1405;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6651230_6652094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:74,0,22
11    6652618    rs2659871    C    T    1535.51    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=5.539;DB;DP=125;Dels=0.0;FS=0.763;HRun=0;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;MQRankSum=1.085;QD=12.28;ReadPosRankSum=-0.258;SNPEFF_AMINO_ACID_CHANGE=P1232;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6652542_6652638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:72,53:125:99:1566,0,1924
11    6653232    rs2659870    C    G    77.65    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=17;Dels=0.0;FS=2.869;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.667;QD=4.57;ReadPosRankSum=2.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:12,5:17:99:108,0,414
11    6653768    rs145749053    C    T    189.96    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.109;QD=15.83;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=G992E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6653262_6654287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:3,9:12:88.55:220,0,89
11    6654613    rs11040938    A    G    31.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.21;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:3,2:5:61.06:61,0,111
11    6655332    rs2659869    T    A    1023.38    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.748;DB;DP=84;Dels=0.0;FS=7.415;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-1.222;QD=12.18;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:49,35:84:99:1053,0,1606
11    6655433    rs997263    G    A    1062.05    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=71;Dels=0.0;FS=5.153;HRun=0;HaplotypeScore=0.7887;MQ=59.68;MQ0=0;MQRankSum=-0.132;QD=14.96;ReadPosRankSum=0.245;SNPEFF_AMINO_ACID_CHANGE=H634;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6655349_6655537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCHS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299441    GT:AD:DP:GQ:PL    0/1:33,38:71:99:1092,0,1082
11    6703892    rs1567135    T    G    489.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288937    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:522,42,0
11    6737893    rs11040980    C    T    492.18    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.54;DB;DP=33;Dels=0.0;FS=6.435;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.774;QD=14.91;ReadPosRankSum=0.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:17,16:33:99:522,0,606
11    6737927    rs11040981    G    A    937.17    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.566;DB;DP=54;Dels=0.0;FS=6.65;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=1.341;QD=17.35;ReadPosRankSum=-0.789;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:24,30:54:99:967,0,683
11    6738291    rs11040983    C    T    2297.21    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=169;Dels=0.0;FS=0.577;HRun=2;HaplotypeScore=0.9789;MQ=59.59;MQ0=0;MQRankSum=0.259;QD=13.59;ReadPosRankSum=0.909;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:93,76:169:99:2327,0,2730
11    6738728    rs17262495    T    C    1781.52    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.38;DB;DP=139;Dels=0.0;FS=1.361;HRun=0;HaplotypeScore=3.7411;MQ=59.37;MQ0=0;MQRankSum=-1.732;QD=12.82;ReadPosRankSum=0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:73,65:139:99:1812,0,2110
11    6738952    rs10769716    G    T    1930.70    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=126;Dels=0.0;FS=1.423;HRun=1;HaplotypeScore=1.5317;MQ=59.63;MQ0=0;MQRankSum=0.075;QD=15.32;ReadPosRankSum=0.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:59,67:126:99:1961,0,1804
11    6739109    rs7112561    G    A    2365.66    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.619;DB;DP=159;Dels=0.0;FS=1.998;HRun=1;HaplotypeScore=1.98;MQ=59.59;MQ0=0;MQRankSum=1.623;QD=14.88;ReadPosRankSum=-2.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:75,83:159:99:2396,0,2238
11    6739407    rs12284429    A    G    935.89    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8332;MQ=59.53;MQ0=0;MQRankSum=0.113;QD=11.85;ReadPosRankSum=-0.419;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:44,35:79:99:966,0,1476
11    6739551    rs11040984    T    C    1122.86    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.302;DB;DP=104;Dels=0.0;FS=0.769;HRun=0;HaplotypeScore=2.632;MQ=59.6;MQ0=0;MQRankSum=1.173;QD=10.8;ReadPosRankSum=-1.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:56,48:104:99:1153,0,1776
11    6739809    rs11040985    C    T    1032.18    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.525;DB;DP=77;Dels=0.0;FS=0.888;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=0.021;QD=13.4;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:40,37:77:99:1062,0,1331
11    6739814    rs7114441    C    T    2709.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=33.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2742,205,0
11    6739822    rs7102825    T    C    1123.08    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.862;DB;DP=70;Dels=0.0;FS=2.018;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.157;QD=16.04;ReadPosRankSum=-0.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:32,38:70:99:1153,0,941
11    6739841    rs79708590    G    A    1098    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.659;DB;DP=84;Dels=0.0;FS=5.5;HRun=1;HaplotypeScore=1.9559;MQ=60.0;MQ0=0;MQRankSum=-1.229;QD=13.07;ReadPosRankSum=0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:45,39:84:99:1128,0,1501
11    6740136    rs10839601    G    A    1150.65    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DB;DP=85;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.578;MQ=60.0;MQ0=0;MQRankSum=1.49;QD=13.54;ReadPosRankSum=-1.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:42,43:85:99:1181,0,1281
11    6740206    rs10839602    C    T    1992.64    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.3652;MQ=59.23;MQ0=0;MQRankSum=-0.466;QD=16.61;ReadPosRankSum=-0.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:56,64:120:99:2023,0,1610
11    6740285    rs10839603    G    A    2191.94    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.677;DB;DP=152;Dels=0.0;FS=2.14;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-1.145;QD=14.42;ReadPosRankSum=0.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:77,75:152:99:2222,0,2415
11    6740308    rs12223353    C    T    2620.13    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=170;Dels=0.0;FS=8.108;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.373;QD=15.41;ReadPosRankSum=0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:82,88:170:99:2650,0,2584
11    6740462    rs10839604    G    C    2376.93    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=169;Dels=0.0;FS=0.573;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.043;QD=14.06;ReadPosRankSum=0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GVINP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526769    GT:AD:DP:GQ:PL    0/1:92,77:169:99:2407,0,3111
11    6789929    rs11828782    C    A    831.68    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=50;Dels=0.0;FS=1.155;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=-1.515;QD=16.63;ReadPosRankSum=0.655;SNPEFF_AMINO_ACID_CHANGE=R87L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6789218_6790286;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2AG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338569    GT:AD:DP:GQ:PL    0/1:22,28:50:99:862,0,676
11    6790106    rs7102536    T    C    1905.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=35.95;SNPEFF_AMINO_ACID_CHANGE=Y28C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6789218_6790286;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2AG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338569    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1939,144,0
11    6807243    rs497681    G    A    257.28    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DB;DP=23;Dels=0.0;FS=5.969;HRun=2;HaplotypeScore=0.0;MQ=57.52;MQ0=0;MQRankSum=-0.157;QD=11.19;ReadPosRankSum=-0.598;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2AG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307401    GT:AD:DP:GQ:PL    0/1:14,9:23:99:287,0,520
11    6816778    rs866347    A    G    663.51    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=68;Dels=0.0;FS=0.999;HRun=1;HaplotypeScore=4.4195;MQ=59.32;MQ0=0;MQRankSum=-1.471;QD=9.76;ReadPosRankSum=-0.279;SNPEFF_AMINO_ACID_CHANGE=S54;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6815756_6817128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332601    GT:AD:DP:GQ:PL    0/1:42,26:68:99:694,0,1197
11    6816875    rs7122644    G    A    493.07    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=0.681;DB;DP=59;Dels=0.0;FS=1.043;HRun=0;HaplotypeScore=0.9665;MQ=59.61;MQ0=0;MQRankSum=0.168;QD=8.36;ReadPosRankSum=0.761;SNPEFF_AMINO_ACID_CHANGE=A22V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6815756_6817128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332601    GT:AD:DP:GQ:PL    0/1:39,20:59:99:523,0,1167
11    6867894    rs7105094    T    C    706.56    PASS    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.371;QD=22.79;ReadPosRankSum=1.371;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299454    GT:AD:DP:GQ:PL    0/1:9,22:31:99:737,0,258
11    6867950    rs2595440    G    A    203.13    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=16.93;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299454    GT:AD:DP:GQ:PL    0/1:5,7:12:99:233,0,169
11    6890939    rs4758141    C    T    536.18    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.301;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.46;MQ0=0;MQRankSum=0.639;QD=9.24;ReadPosRankSum=-0.569;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_6890924_6891976;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307322    GT:AD:DP:GQ:PL    0/1:37,21:58:99:566,0,1136
11    6890946    rs4758142    A    G    711.08    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.305;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.27;MQ0=0;MQRankSum=0.032;QD=10.46;ReadPosRankSum=-0.98;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_6890924_6891976;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307322    GT:AD:DP:GQ:PL    0/1:39,29:68:99:741,0,1183
11    6891113    rs3930075    A    G    2088.36    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=131;Dels=0.0;FS=0.725;HRun=0;HaplotypeScore=1.9849;MQ=45.97;MQ0=6;MQRankSum=-1.268;QD=15.94;ReadPosRankSum=-1.646;SNPEFF_AMINO_ACID_CHANGE=H43R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6890924_6891976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307322    GT:AD:DP:GQ:PL    0/1:56,75:131:99:2118,0,1441
11    6891528    rs7117739    C    G    890.59    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=76;Dels=0.0;FS=1.98;HRun=0;HaplotypeScore=1.6498;MQ=54.12;MQ0=0;MQRankSum=-3.168;QD=11.72;ReadPosRankSum=-0.581;SNPEFF_AMINO_ACID_CHANGE=L181;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6890924_6891976;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307322    GT:AD:DP:GQ:PL    0/1:39,36:76:99:921,0,1245
11    6891605    rs10839631    A    G    787.58    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.852;DB;DP=93;Dels=0.0;FS=5.649;HRun=0;HaplotypeScore=3.4729;MQ=55.1;MQ0=0;MQRankSum=-3.446;QD=8.47;ReadPosRankSum=-0.313;SNPEFF_AMINO_ACID_CHANGE=H207R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6890924_6891976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307322    GT:AD:DP:GQ:PL    0/1:58,35:93:99:818,0,1774
11    6891704    rs10839632    T    C    1850.28    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DB;DP=126;Dels=0.0;FS=9.843;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;MQRankSum=1.936;QD=14.68;ReadPosRankSum=-0.02;SNPEFF_AMINO_ACID_CHANGE=I240T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6890924_6891976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307322    GT:AD:DP:GQ:PL    0/1:67,59:126:99:1880,0,2068
11    6891758    rs7926083    A    C    2130.74    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.82;DB;DP=137;Dels=0.0;FS=2.21;HRun=0;HaplotypeScore=1.7853;MQ=59.27;MQ0=0;MQRankSum=1.45;QD=15.55;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=K258T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6890924_6891976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307322    GT:AD:DP:GQ:PL    0/1:59,78:137:99:2161,0,1769
11    6898663    rs10839635    G    A    1611.21    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=5.75;DB;DP=97;Dels=0.0;FS=1.789;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.654;QD=16.61;ReadPosRankSum=-1.318;SNPEFF_AMINO_ACID_CHANGE=R262Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6897856_6898850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379829    GT:AD:DP:GQ:PL    0/1:42,55:97:99:1641,0,1171
11    6898758    rs7102808    A    C    1238.99    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.577;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.977;QD=11.16;ReadPosRankSum=-0.573;SNPEFF_AMINO_ACID_CHANGE=R294;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6897856_6898850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379829    GT:AD:DP:GQ:PL    0/1:62,49:111:99:1269,0,2119
11    6913127    rs2741804    A    G    476.19    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.88;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=14.01;ReadPosRankSum=-0.121;SNPEFF_AMINO_ACID_CHANGE=M202T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6912721_6913830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299459    GT:AD:DP:GQ:PL    0/1:16,18:34:99:506,0,562
11    6913244    rs1965208    A    G    1486.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.39;SNPEFF_AMINO_ACID_CHANGE=I163T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6912721_6913830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299459    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1519,114,0
11    6913290    rs1965209    A    G    732.29    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.071;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.431;QD=12.63;ReadPosRankSum=0.399;SNPEFF_AMINO_ACID_CHANGE=S148P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6912721_6913830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299459    GT:AD:DP:GQ:PL    0/1:32,26:58:99:762,0,1043
11    6942628    rs11605995    A    C    856.71    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.291;DB;DP=73;Dels=0.0;FS=0.884;HRun=1;HaplotypeScore=3.9601;MQ=59.68;MQ0=0;MQRankSum=-1.291;QD=11.74;ReadPosRankSum=-0.249;SNPEFF_AMINO_ACID_CHANGE=A132;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6942205_6943264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317834    GT:AD:DP:GQ:PL    0/1:40,33:73:99:887,0,1277
11    6942695    rs12806437    C    T    1200.39    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.732;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.778;QD=15.59;ReadPosRankSum=-1.353;SNPEFF_AMINO_ACID_CHANGE=R155W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6942205_6943264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2D3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317834    GT:AD:DP:GQ:PL    0/1:35,42:77:99:1230,0,1057
11    6942952    rs2035844    T    C    435.80    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.644;DB;DP=48;Dels=0.0;FS=4.428;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.011;QD=9.08;ReadPosRankSum=-0.449;SNPEFF_AMINO_ACID_CHANGE=T240;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6942205_6943264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317834    GT:AD:DP:GQ:PL    0/1:30,18:48:99:466,0,974
11    6943254    rs1388535    C    T    383.26    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.395;DB;DP=28;Dels=0.0;FS=1.617;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.092;QD=13.69;ReadPosRankSum=-1.29;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF215;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278319    GT:AD:DP:GQ:PL    0/1:13,15:28:99:413,0,361
11    6962971    rs10839663    C    T    661.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF215;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278319    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:694,51,0
11    6965012    rs2515947    C    G    1142.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7046;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF215;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278319    GT:AD:DP:GQ:PL    1/1:1,30:31:87.26:1176,87,0
11    6976988    rs2239731    A    T    755.72    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=49;Dels=0.0;FS=2.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.797;QD=15.11;ReadPosRankSum=0.569;SNPEFF_AMINO_ACID_CHANGE=G260;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6976921_6979068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF215;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278319    GT:AD:DP:GQ:PL    0/1:23,26:49:99:786,0,706
11    6977175    rs2239730    G    C    1013.09    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.832;DB;DP=63;Dels=0.0;FS=0.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.749;QD=16.08;ReadPosRankSum=0.089;SNPEFF_AMINO_ACID_CHANGE=V323L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_6976921_6979068;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF215;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278319    GT:AD:DP:GQ:PL    0/1:32,31:63:99:1043,0,998
11    7022160    rs2857919    A    G    3126.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6634;MQ=59.49;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=C252R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7020549_7022786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF214;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278314    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3160,244,0
11    7022531    rs1156525    A    T    4786.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=35.45;SNPEFF_AMINO_ACID_CHANGE=L128H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7020549_7022786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF214;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278314    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4786,361,0
11    7022717    rs1156526    T    C    5785.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=Y66C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7020549_7022786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF214;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278314    GT:AD:DP:GQ:PL    1/1:0,162:162:99:5785,424,0
11    7022945    rs72848591    C    A    172.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278314    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:205,15,0
11    7023688    rs7932579    A    G    137.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF214;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278314    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:170,15,0
11    7059960    rs12801277    A    C    1698.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=36.15;SNPEFF_AMINO_ACID_CHANGE=N48T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7059797_7060106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1732,129,0
11    7060236    rs11288450    TG    T    293.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=21.3113;IndelType=D;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:336,24,0
11    7063755    rs7123944    C    T    2060.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_AMINO_ACID_CHANGE=F166;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7063619_7065215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2093,154,0
11    7065289    rs6578821    C    A    459.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:492,36,0
11    7070723    rs10839700    G    T    148.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:181,15,0
11    7070866    rs1552727    G    A    1885.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1918,141,0
11    7071031    rs1552726    G    A    3481.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.581;MQ=59.78;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=E751;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7070902_7071069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3481,271,0
11    7079038    rs10839708    G    A    2082.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4607;MQ=59.62;MQ0=0;QD=34.14;SNPEFF_AMINO_ACID_CHANGE=E808K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7078908_7079078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2116,156,0
11    7079261    rs10500676    A    G    122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
11    7091772    rs10769763    C    A    572.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299481    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:605,48,0
11    7110363    rs4758158    G    A    916.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=A4;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7110165_7112379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306904    GT:AD:DP:GQ:PL    1/1:0,27:27:72.22:949,72,0
11    7324475    rs4412741    T    C    2334.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.04;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=D117;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7324270_7324621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318881    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2368,181,0
11    7437599    rs7946653    C    T    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318881    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    7439095    rs35452185    A    G    166.03    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=16.6;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318881    GT:AD:DP:GQ:PL    0/1:3,7:10:88.46:196,0,88
11    7439264    rs34058874    C    T    691.75    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.906;DB;DP=59;Dels=0.0;FS=5.341;HRun=2;HaplotypeScore=3.2489;MQ=59.61;MQ0=0;MQRankSum=-0.023;QD=11.72;ReadPosRankSum=-1.004;SNPEFF_AMINO_ACID_CHANGE=T414;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7439188_7439359;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318881    GT:AD:DP:GQ:PL    0/1:31,28:59:99:722,0,944
11    7439418    rs12365591    A    G    298.30    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.232;QD=13.56;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318881    GT:AD:DP:GQ:PL    0/1:10,12:22:99:328,0,344
11    7439447    rs12364093    C    T    143.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.35;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318881    GT:AD:DP:GQ:PL    0/1:5,5:10:99:173,0,175
11    7441737    rs11041372    T    C    369.63    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.284;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.175;QD=11.2;ReadPosRankSum=-0.741;SNPEFF_AMINO_ACID_CHANGE=R446;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7441737_7441866;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318881    GT:AD:DP:GQ:PL    0/1:18,15:33:99:400,0,599
11    7441952    rs11041373    A    G    236.36    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=13.9;ReadPosRankSum=1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SYT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318881    GT:AD:DP:GQ:PL    0/1:9,8:17:99:266,0,307
11    7509386    rs141351486    C    T    540.82    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.373;DB;DP=53;Dels=0.0;FS=4.256;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-1.082;QD=10.02;ReadPosRankSum=-0.427;SNPEFF_AMINO_ACID_CHANGE=R52*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_7509362_7509437;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFML1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000534244    GT:AD:DP:GQ:PL    0/1:32,21:53:99:571,0,1047
11    7586738    rs6578874    G    T    1256.44    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.73;MQ0=0;MQRankSum=0.558;QD=14.78;ReadPosRankSum=-1.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299492    GT:AD:DP:GQ:PL    0/1:42,43:85:99:1286,0,1453
11    7614531    rs7129888    C    A    282.51    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.148;QD=13.45;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299492    GT:AD:DP:GQ:PL    0/1:11,10:21:99:313,0,313
11    7618988    .    C    T    181.86    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.53;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299492    GT:AD:DP:GQ:PL    0/1:4,7:11:97.07:212,0,97
11    7619041    rs4758204    G    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299492    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    7642407    rs10839822    T    C    207.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299492    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
11    7646879    rs10839826    C    A    773.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299492    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:806,60,0
11    7650564    rs56298316    C    T    149.90    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=18.74;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525597    GT:AD:DP:GQ:PL    0/1:3,5:8:99:180,0,99
11    7650607    rs6578887    A    C    288.19    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.445;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.619;QD=15.17;ReadPosRankSum=1.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525597    GT:AD:DP:GQ:PL    0/1:8,11:19:99:318,0,264
11    7652096    rs72851307    C    T    1028.80    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.346;DB;DP=75;Dels=0.0;FS=1.396;HRun=0;HaplotypeScore=1.7172;MQ=59.75;MQ0=0;MQRankSum=-0.846;QD=13.72;ReadPosRankSum=-0.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529575    GT:AD:DP:GQ:PL    0/1:41,34:75:99:1059,0,1322
11    7652385    rs4130354    T    A    59.11    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=7.39;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529575    GT:AD:DP:GQ:PL    0/1:2,6:8:63.61:89,0,64
11    7656809    rs11041490    G    A    640.32    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.175;DB;DP=44;Dels=0.0;FS=1.205;HRun=0;HaplotypeScore=1.9889;MQ=59.48;MQ0=0;MQRankSum=-1.645;QD=14.55;ReadPosRankSum=2.326;SNPEFF_AMINO_ACID_CHANGE=P249;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7656783_7656824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533792    GT:AD:DP:GQ:PL    0/1:21,23:44:99:670,0,579
11    7661255    rs66917736    TCC    T    179.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=35.4529;IndelType=D;MQ=49.96;MQ0=0;QD=35.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532381    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:221,15,0
11    7662732    rs4643071    C    T    1425.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;QD=26.4;SNPEFF_AMINO_ACID_CHANGE=D127;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7662710_7662851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530081    GT:AD:DP:GQ:PL    1/1:0,52:54:99:1459,114,0
11    7663726    rs4402283    T    C    216.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530081    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:249,21,0
11    7670249    rs4237757    A    G    876.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299492    GT:AD:DP:GQ:PL    1/1:0,28:28:78.21:909,78,0
11    7670353    rs4758009    A    C    1305.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299492    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1338,99,0
11    7670440    rs4758209    A    G    1316.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=R500G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7670378_7670466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533792    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1349,99,0
11    7670943    rs10839831    G    A    3628.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=39.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532112    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3628,268,0
11    7671816    rs11041496    T    C    242.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532112    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
11    7672272    rs3923491    G    A    667.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.78;MQ0=0;QD=35.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524495    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:701,54,0
11    7672668    rs7940775    T    C    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    7673015    rs5864    G    A    2714.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=E133;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7672887_7673075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537211    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2747,208,0
11    7673099    rs11041498    T    C    1516.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.56;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524495    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1550,126,0
11    7673106    rs11041499    T    C    1250.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.167;DB;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9999;MQ=59.54;MQ0=0;MQRankSum=-1.591;QD=25.01;ReadPosRankSum=0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524495    GT:AD:DP:GQ:PL    1/1:1,49:50:72.09:1283,72,0
11    7673261    rs7102819    G    T    151.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524495    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
11    7686395    rs1128643    T    G    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299497    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:86,6,0
11    7686674    rs13854    T    C    287.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.9;SNPEFF_AMINO_ACID_CHANGE=L254;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7686331_7686777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299498    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
11    7686810    rs55826178    C    G    288.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299497    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:322,24,0
11    7686915    rs11041521    T    A    106.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299497    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
11    7686959    rs11041522    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299497    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    7687517    rs11041523    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436351    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    7687669    rs12796110    A    C    1337.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436351    GT:AD:DP:GQ:PL    1/1:1,38:39:99:1371,99,0
11    7687715    rs12801394    T    C    1383.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=30.08;SNPEFF_AMINO_ACID_CHANGE=N209D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7687682_7687781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299497    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1417,108,0
11    7687863    rs62620008    C    A    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436351    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
11    7687913    rs72851388    C    T    90.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436351    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
11    7689633    rs10743030    A    C    2178.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=5.1947;MQ=59.6;MQ0=0;QD=38.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436351    GT:AD:DP:GQ:PL    1/1:0,55:56:99:2211,159,0
11    7690685    rs4631871    T    C    278.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525307    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:312,24,0
11    7691104    rs7942361    A    G    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525307    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
11    7712471    rs4509745    C    T    1545.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501;DB;DP=45;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.192;QD=34.34;ReadPosRankSum=1.424;SNPEFF_AMINO_ACID_CHANGE=W556*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_7712444_7712631;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:1,44:45:81.16:1578,81,0
11    7716549    rs4287332    C    G    519.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534817    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:553,42,0
11    7716855    rs4528317    T    A    2186.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.58;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=N410Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7716801_7716911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2219,181,0
11    7717491    rs4132089    T    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534817    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    7720426    rs4367936    C    A    408.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:442,33,0
11    7720453    rs35619418    A    AGG    413.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=38.3018;IndelType=I;MQ=57.05;MQ0=0;QD=51.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:1,7:8:24.08:455,24,0
11    7721743    rs12279973    C    A    863.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:897,66,0
11    7721870    rs10839849    G    A    2679.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=P292S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7721843_7722032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2712,214,0
11    7723171    rs5789540    GA    G    448.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=29.0344;IndelType=D;MQ=61.78;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:491,36,0
11    7723683    rs4373911    G    A    2676.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2710,199,0
11    7724021    rs12283887    C    T    176.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
11    7725173    rs3924748    G    A    646.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:680,51,0
11    7725454    rs11041539    C    T    297.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:331,24,0
11    7727872    rs12289558    T    C    1269.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=31.75;ReadPosRankSum=1.555;SNPEFF_AMINO_ACID_CHANGE=T24A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7727854_7727941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVCH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454689    GT:AD:DP:GQ:PL    1/1:1,39:40:96.31:1303,96,0
11    7751096    rs1459828    T    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10AB1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317359    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
11    7794545    rs1482784    C    A    2243.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5P1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299512    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2276,163,0
11    7794650    rs371799    G    C    1360.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5P1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299512    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1394,111,0
11    7794976    rs980145    T    A    1932.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5P1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299512    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1965,153,0
11    7847208    rs1482791    T    C    1957.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=34.96;SNPEFF_AMINO_ACID_CHANGE=V104;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7846584_7847519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5P3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328375    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1991,147,0
11    7847466    rs1482792    A    G    2000.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.142;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=59.24;MQ0=0;MQRankSum=1.164;QD=32.8;ReadPosRankSum=1.335;SNPEFF_AMINO_ACID_CHANGE=S18;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7846584_7847519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5P3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328375    GT:AD:DP:GQ:PL    1/1:1,60:61:99:2034,118,0
11    7847472    rs1482793    C    T    2004.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=G16;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7846584_7847519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5P3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328375    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2038,153,0
11    7847523    rs1482794    T    A    1131.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328375    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1164,87,0
11    7870631    rs11041601    C    G    764.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.422;QD=12.13;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-494M8.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527847    GT:AD:DP:GQ:PL    0/1:35,28:63:99:794,0,1041
11    7871011    rs4758022    A    G    3278.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-494M8.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527847    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3279,244,0
11    7949350    rs4758258    A    G    1780.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.65;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=L287P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7949180_7950209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309838    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1814,138,0
11    7949791    rs7933807    A    C    1714.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=V140G;SNPEFF_CODON_CHANGE=gTt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7949180_7950209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309838    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1747,141,0
11    7949860    rs7928451    G    A    2603.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.688;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.288;QD=33.38;ReadPosRankSum=-0.533;SNPEFF_AMINO_ACID_CHANGE=A117V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_7949180_7950209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309838    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2637,162,0
11    7960045    rs6578915    G    A    383.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360759    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:416,30,0
11    7961146    rs9787855    A    G    447.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360759    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:481,36,0
11    8008665    rs66792802    GT    G    351.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=4;HaplotypeScore=36.3492;IndelType=D;MQ=58.28;MQ0=0;QD=31.91;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309828    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:393,33,0
11    8014479    rs4758267    C    T    3465.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=H137;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8014434_8014571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538607    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3466,268,0
11    8115762    rs7396690    C    G    564.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:597,45,0
11    8116920    rs3752898    C    G    169.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
11    8117228    rs11041739    A    G    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    8118103    rs2242501    A    G    490.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=25.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:523,42,0
11    8118116    rs2242502    A    G    704.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:737,57,0
11    8118185    rs10160258    C    G    1565.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1598,123,0
11    8118200    rs7931842    C    A    1770.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=31.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1803,135,0
11    8118472    rs2242503    T    C    493.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:526,45,0
11    8119063    rs7950355    A    G    266.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:299,24,0
11    8119565    rs7483939    A    C    119.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
11    8122091    rs72848487    C    T    360.34    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.491;QD=13.86;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=S386;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8122050_8122148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    0/1:13,12:26:99:390,0,279
11    8122234    rs7394561    G    A    323.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9994;MQ=61.19;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299506    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:357,27,0
11    8246181    rs1042359    A    G    573.14    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=67;Dels=0.0;FS=3.646;HRun=0;HaplotypeScore=0.0;MQ=53.08;MQ0=0;MQRankSum=1.831;QD=8.55;ReadPosRankSum=-0.554;SNPEFF_AMINO_ACID_CHANGE=F140;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8246026_8246268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534484    GT:AD:DP:GQ:PL    0/1:36,31:67:99:603,0,1055
11    8246326    rs34544683    G    A    337.40    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=32;Dels=0.0;FS=7.084;HRun=0;HaplotypeScore=1.999;MQ=57.8;MQ0=0;MQRankSum=0.099;QD=10.54;ReadPosRankSum=0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335790    GT:AD:DP:GQ:PL    0/1:17,15:32:99:367,0,558
11    8251921    rs3750952    G    C    1267.19    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.642;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4448;MQ=60.0;MQ0=0;MQRankSum=-0.11;QD=14.91;ReadPosRankSum=0.11;SNPEFF_AMINO_ACID_CHANGE=A41;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8251838_8252051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534484    GT:AD:DP:GQ:PL    0/1:40,45:85:99:1297,0,1243
11    8284838    rs204931    A    G    308.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=22.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335790    GT:AD:DP:GQ:PL    1/1:0,14:14:27.08:341,27,0
11    8284981    rs176083    A    C    226.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428101    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:260,24,0
11    8284995    rs204929    T    C    238.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428101    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:271,21,0
11    8478743    rs186847003    A    C    125.77    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.05;MQ0=0;MQRankSum=0.135;QD=10.48;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422559    GT:AD:DP:GQ:PL    0/1:7,5:12:99:156,0,261
11    8483335    rs1900273    G    A    515.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.583;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.25;QD=14.33;ReadPosRankSum=-1.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457885    GT:AD:DP:GQ:PL    0/1:16,20:36:99:546,0,471
11    8486310    rs1446464    C    A    949.34    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.287;DB;DP=74;Dels=0.0;FS=2.105;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=0.026;QD=12.83;ReadPosRankSum=2.08;SNPEFF_AMINO_ACID_CHANGE=A133;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8486256_8486369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315204    GT:AD:DP:GQ:PL    0/1:40,34:74:99:979,0,977
11    8496516    rs2289923    G    A    461.75    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.235;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.515;QD=10.74;ReadPosRankSum=-0.117;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_8496262_8496613;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431279    GT:AD:DP:GQ:PL    0/1:27,16:43:99:492,0,946
11    8496611    rs2289921    G    C    103.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.2;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STK33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358872    GT:AD:DP:GQ:PL    0/1:2,4:6:67.03:133,0,67
11    8639325    rs4929924    G    A    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481014    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
11    8641501    rs7946508    C    A    228.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299550    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:262,21,0
11    8641882    rs7943945    G    A    276.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299550    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:310,24,0
11    8642218    rs7950166    C    T    131.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299550    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
11    8644530    rs4929948    T    G    87.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.88;MQ0=0;QD=21.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299550    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
11    8646237    rs12803166    G    T    1638.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.072;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7337;MQ=60.0;MQ0=0;MQRankSum=-1.732;QD=33.45;ReadPosRankSum=1.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299550    GT:AD:DP:GQ:PL    1/1:1,47:49:92.41:1672,92,0
11    8662090    rs11042022    T    C    90.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9472;MQ=49.96;MQ0=0;QD=18.11;SNPEFF_AMINO_ACID_CHANGE=H464R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8661774_8662699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402157    GT:AD:DP:GQ:PL    1/1:0,4:5:12.02:123,12,0
11    8662516    rs11042023    T    C    327.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=36.42;SNPEFF_AMINO_ACID_CHANGE=H322R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8661774_8662699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402157    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:361,27,0
11    8664454    rs4503528    A    G    345.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529057    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:379,30,0
11    8664869    rs10769937    C    T    163.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529057    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
11    8669437    rs10840100    A    G    679.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299550    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:712,57,0
11    8670172    rs7950801    T    C    2077.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=32.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299550    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2110,162,0
11    8671369    rs10840101    C    T    505.88    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=35;Dels=0.0;FS=10.571;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.545;QD=14.45;ReadPosRankSum=0.743;SNPEFF_AMINO_ACID_CHANGE=L25;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8671287_8671434;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM66;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299550    GT:AD:DP:GQ:PL    0/1:18,17:35:99:536,0,580
11    8704965    rs2073684    C    T    233.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314138    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:266,21,0
11    8705528    rs61875926    C    G    760.93    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.359;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.257;QD=14.63;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL27A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529227    GT:AD:DP:GQ:PL    0/1:24,28:52:99:791,0,718
11    8717003    rs2270956    C    T    2935.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=34.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526701    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2968,217,0
11    8724345    rs3833780    A    AG    766.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=42.9554;IndelType=I;MQ=60.6;MQ0=0;QD=42.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447053    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:809,54,0
11    8735662    rs931756    G    A    638.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526057    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:672,51,0
11    8736046    rs931757    C    T    130.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526057    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
11    8747822    rs7128811    T    A    393.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.615;DB;DP=28;Dels=0.0;FS=4.869;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=14.07;ReadPosRankSum=-1.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524757    GT:AD:DP:GQ:PL    0/1:14,14:28:99:424,0,425
11    8751889    rs3794153    C    G    1875.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.188;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9987;MQ=58.91;MQ0=0;MQRankSum=-0.775;QD=31.26;ReadPosRankSum=0.859;SNPEFF_AMINO_ACID_CHANGE=K316N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8751497_8752756;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313726    GT:AD:DP:GQ:PL    1/1:2,58:60:83.59:1909,84,0
11    8933064    rs1133833    G    A    88.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=8.751;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.0;QD=8.82;ReadPosRankSum=-1.036;SNPEFF_AMINO_ACID_CHANGE=R18K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8933012_8933218;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529942    GT:AD:DP:GQ:PL    0/1:6,4:10:99:118,0,195
11    8933853    rs2742519    T    G    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299576    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:69,0,31
11    8934101    rs2742518    A    G    903.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299576    GT:AD:DP:GQ:PL    1/1:0,28:28:75.22:936,75,0
11    8938787    rs2016942    A    G    102.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.14;QD=5.7;ReadPosRankSum=1.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326053    GT:AD:DP:GQ:PL    0/1:12,6:18:99:133,0,411
11    8938934    rs2016844    C    T    477.80    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=2.463;DB;DP=25;Dels=0.0;FS=1.721;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.557;QD=19.11;ReadPosRankSum=-0.311;SNPEFF_AMINO_ACID_CHANGE=T143M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8938834_8939666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529876    GT:AD:DP:GQ:PL    0/1:9,16:25:99:508,0,273
11    8942942    rs2653601    C    T    786.07    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=3.368;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.854;QD=11.73;ReadPosRankSum=-0.951;SNPEFF_AMINO_ACID_CHANGE=R442Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8942841_8943062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326053    GT:AD:DP:GQ:PL    0/1:40,27:67:99:816,0,1013
11    8942999    rs2568023    G    A    2402.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=A423V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8942841_8943062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326053    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2436,181,0
11    8946950    rs3751068    G    T    365.87    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-1.214;QD=10.76;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526227    GT:AD:DP:GQ:PL    0/1:20,14:34:99:396,0,554
11    8947021    rs2653588    A    G    1293.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.07;SNPEFF_AMINO_ACID_CHANGE=L398P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8947010_8947654;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326053    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1326,102,0
11    8947179    rs2568077    G    A    969.33    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8909;MQ=59.57;MQ0=0;MQRankSum=-0.422;QD=17.95;ReadPosRankSum=-0.924;SNPEFF_AMINO_ACID_CHANGE=D345;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8947010_8947654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326053    GT:AD:DP:GQ:PL    0/1:24,30:54:99:999,0,651
11    8947283    rs3751066    G    C    691.93    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.665;MQ=59.68;MQ0=0;MQRankSum=0.493;QD=11.73;ReadPosRankSum=1.101;SNPEFF_AMINO_ACID_CHANGE=P311A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8947010_8947654;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326053    GT:AD:DP:GQ:PL    0/1:31,28:59:99:722,0,1036
11    8948680    rs3751065    A    T    334.52    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=29;Dels=0.0;FS=15.529;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=11.54;ReadPosRankSum=0.111;SNPEFF_AMINO_ACID_CHANGE=P122;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8948487_8948721;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326053    GT:AD:DP:GQ:PL    0/1:17,12:29:99:365,0,500
11    8959020    rs3751063    G    A    107.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.39;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325884    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,140
11    8959370    rs2742505    G    A    1247.18    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=2.345;DB;DP=58;Dels=0.0;FS=1.079;HRun=0;HaplotypeScore=1.578;MQ=59.36;MQ0=0;MQRankSum=-0.95;QD=21.5;ReadPosRankSum=-0.16;SNPEFF_AMINO_ACID_CHANGE=Y113;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8959119_8959720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325884    GT:AD:DP:GQ:PL    0/1:18,40:58:99:1277,0,484
11    8959511    rs4910179    T    G    1384.88    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=86;Dels=0.0;FS=4.864;HRun=0;HaplotypeScore=1.7987;MQ=59.03;MQ0=0;MQRankSum=0.359;QD=16.1;ReadPosRankSum=1.456;SNPEFF_AMINO_ACID_CHANGE=G66;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8959119_8959720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325884    GT:AD:DP:GQ:PL    0/1:42,44:86:99:1415,0,1368
11    8959545    rs4909951    C    A    1260.15    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=93;Dels=0.0;FS=3.436;HRun=0;HaplotypeScore=2.8488;MQ=59.5;MQ0=0;MQRankSum=-0.155;QD=13.55;ReadPosRankSum=-1.497;SNPEFF_AMINO_ACID_CHANGE=R55L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_8959119_8959720;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325884    GT:AD:DP:GQ:PL    0/1:48,45:93:99:1290,0,1490
11    8970083    rs2653604    C    A    368.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.601;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.8208;MQ=58.13;MQ0=0;MQRankSum=-0.735;QD=14.76;ReadPosRankSum=1.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528117    GT:AD:DP:GQ:PL    0/1:10,15:25:99:399,0,286
11    8977691    rs2742488    C    G    178.74    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=14.9;ReadPosRankSum=-1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309134    GT:AD:DP:GQ:PL    0/1:5,7:12:99:209,0,176
11    8977707    rs2568069    G    A    268.03    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=22;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.363;QD=12.18;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309134    GT:AD:DP:GQ:PL    0/1:12,10:22:99:298,0,427
11    9005036    rs2568046    T    A    762.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525100    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:796,57,0
11    9007651    rs2742469    A    G    81.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309166    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
11    9010006    rs2568047    A    C    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309166    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
11    9051385    rs7479998    C    A    1515.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309263    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1548,114,0
11    9052051    rs10743097    T    C    74.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309263    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:106,9,0
11    9052170    rs10769983    G    A    210.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.783;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.683;QD=13.13;ReadPosRankSum=0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309263    GT:AD:DP:GQ:PL    0/1:8,8:16:99:240,0,232
11    9052423    rs7395988    A    C    1295.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_AMINO_ACID_CHANGE=H586Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_9052305_9052472;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450649    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1329,99,0
11    9072140    rs3751052    C    T    786.84    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.096;DB;DP=51;Dels=0.0;FS=1.172;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-1.962;QD=15.43;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309263    GT:AD:DP:GQ:PL    0/1:21,30:51:99:817,0,578
11    9075020    rs3763904    G    T    117.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.56;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309263    GT:AD:DP:GQ:PL    0/1:2,4:6:56.72:147,0,57
11    9077652    rs7396115    A    G    147.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=16.34;ReadPosRankSum=-1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309263    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,133
11    9081926    rs7112378    C    T    721.76    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.649;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=12.89;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309263    GT:AD:DP:GQ:PL    0/1:30,26:56:99:752,0,911
11    9096189    rs7930311    G    C    2800.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.47;MQ0=0;QD=32.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534295    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2834,211,0
11    9111558    rs963167    A    G    71.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309263    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:104,9,0
11    9161521    rs7396705    C    T    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328194    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
11    9164414    rs146355332    G    A    548.73    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=33;Dels=0.0;FS=6.435;HRun=0;HaplotypeScore=0.9159;MQ=59.3;MQ0=0;MQRankSum=0.666;QD=16.63;ReadPosRankSum=-0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526707    GT:AD:DP:GQ:PL    0/1:16,17:33:99:579,0,547
11    9166835    rs1039210    T    C    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526707    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    9167399    rs10732517    T    C    5252.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=36.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531580    GT:AD:DP:GQ:PL    1/1:0,143:144:99:5252,385,0
11    9171775    rs7123970    A    G    1829.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328194    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1862,147,0
11    9172432    rs10769995    A    G    174.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328194    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
11    9182219    rs2291839    A    G    273.13    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=16;Dels=0.0;FS=3.01;HRun=2;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=0.163;QD=17.07;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328194    GT:AD:DP:GQ:PL    0/1:6,10:16:99:303,0,186
11    9182604    rs2316088    G    A    61.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.33;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328194    GT:AD:DP:GQ:PL    0/1:2,3:5:66.21:92,0,66
11    9187634    .    C    CT    115.04    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DP=16;FS=0.0;HRun=11;HaplotypeScore=57.3088;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=0.573;QD=7.19;ReadPosRankSum=1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527896    GT:AD:DP:GQ:PL    0/1:10,6:16:42.67:154,0,43
11    9192336    rs72024448    TAC    T    342.21    PASS    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=1.414;DB;DP=43;FS=8.239;HRun=0;HaplotypeScore=167.2988;IndelType=D;MQ=60.25;MQ0=0;MQRankSum=-0.25;QD=7.96;ReadPosRankSum=-0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526523    GT:AD:DP:GQ:PL    0/1:30,12:43:99:381,0,377
11    9199650    rs60693427    C    T    2355.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.303;DB;DP=169;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.2303;MQ=59.86;MQ0=0;MQRankSum=-1.22;QD=13.94;ReadPosRankSum=-0.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328194    GT:AD:DP:GQ:PL    0/1:84,84:169:99:2385,0,2644
11    9200299    rs7949349    A    G    104.64    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.635;QD=8.72;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328194    GT:AD:DP:GQ:PL    0/1:7,5:12:99:135,0,243
11    9225486    rs952374    C    G    375.95    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.686;DB;DP=30;Dels=0.0;FS=1.367;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.351;QD=12.53;ReadPosRankSum=0.852;SNPEFF_AMINO_ACID_CHANGE=E224Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_9225207_9225864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328194    GT:AD:DP:GQ:PL    0/1:16,14:30:99:406,0,504
11    9305177    rs72861351    C    T    320.64    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.979;QD=21.38;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM41B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299596    GT:AD:DP:GQ:PL    0/1:4,11:15:98.66:351,0,99
11    9308318    rs4622264    A    G    208.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM41B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299596    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
11    9309405    rs5014247    A    G    331.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM41B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299596    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
11    9310169    rs10770007    C    A    158.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=13.18;ReadPosRankSum=1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM41B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299596    GT:AD:DP:GQ:PL    0/1:6,6:12:99:188,0,211
11    9316937    rs4601780    G    A    1323.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM41B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299596    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1357,99,0
11    9321399    rs10743101    A    G    192.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM41B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299596    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:226,18,0
11    9406349    rs4606477    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_AMINO_ACID_CHANGE=T13;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_9406169_9406394;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379719    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    9442388    rs12418581    C    A    76.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.78;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531235    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,106
11    9450377    rs2290423    T    G    677.28    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.156;DB;DP=48;Dels=0.0;FS=4.301;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.041;QD=14.11;ReadPosRankSum=2.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530037    GT:AD:DP:GQ:PL    0/1:23,25:48:99:707,0,699
11    9457722    rs138914404    CAG    C    199.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=28.5068;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=22.12;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379719    GT:AD:DP:GQ:PL    0/1:3,6:9:99:238,0,143
11    9459592    rs71485241    GTTTTTTTTTTTTTTT    G    508.44    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=3.637;DB;DP=72;FS=2.534;HRun=32;HaplotypeScore=912.1195;IndelType=D;MQ=35.53;MQ0=0;MQRankSum=-0.906;QD=7.06;ReadPosRankSum=2.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379719    GT:AD:DP:GQ:PL    0/1:56,7:72:99:547,0,4823
11    9493100    rs7119680    G    T    49.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=11;HaplotypeScore=1.4679;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=6.15;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299606    GT:AD:DP:GQ:PL    0/1:4,4:8:79.23:79,0,123
11    9495961    rs2278900    A    T    148.53    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=24.75;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414370    GT:AD:DP:GQ:PL    0/1:1,5:6:18.92:178,0,19
11    9501274    rs11042382    G    T    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412390    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,74
11    9522567    rs2290425    T    C    124.37    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.357;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=7.32;ReadPosRankSum=-1.558;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299606    GT:AD:DP:GQ:PL    0/1:11,6:17:99:154,0,367
11    9537723    rs181061364    C    A    281.19    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.844;DB;DP=24;Dels=0.0;FS=12.755;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.381;QD=11.72;ReadPosRankSum=-1.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299606    GT:AD:DP:GQ:PL    0/1:14,10:24:99:311,0,441
11    9537904    rs10743108    G    C    665.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=E530Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_9537748_9537909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF143;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396597    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:699,54,0
11    9546587    rs3763874    G    A    43.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.44;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299606    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:73,0,20
11    9603236    rs4370932    C    T    1082.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WEE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524549    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1115,81,0
11    9628187    rs10770046    C    T    530.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.81;MQ0=0;QD=17.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-16F15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475608    GT:AD:DP:GQ:PL    1/1:0,30:30:45.13:564,45,0
11    9715628    rs360049    C    T    985.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=57.57;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318950    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1018,78,0
11    9715646    rs3763865    T    C    1290.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.2;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318950    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1323,99,0
11    9750757    rs436637    A    T    71.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526358    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:104,9,0
11    9751089    rs12360647    G    A    501.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526358    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:534,42,0
11    9751196    rs10840293    G    A    34.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526358    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
11    9754221    rs360157    C    T    132.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_AMINO_ACID_CHANGE=N199;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_9754076_9754257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534662    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
11    9759608    rs93139    T    C    146.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318950    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:180,15,0
11    9759713    rs93138    T    G    665.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318950    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:699,51,0
11    9759918    rs173396    G    A    585.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534662    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:619,45,0
11    9769562    rs415895    C    G    1134.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_AMINO_ACID_CHANGE=Q447E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_9769405_9769603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447399    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1168,87,0
11    9771687    rs6483656    G    C    196.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.7;MQ0=0;QD=32.82;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SWAP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318950    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
11    9801925    rs3751000    T    G    634.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529587    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:668,51,0
11    9805846    rs35103525    G    A    219.42    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.161;QD=9.54;ReadPosRankSum=-1.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532095    GT:AD:DP:GQ:PL    0/1:15,8:23:99:249,0,480
11    9806914    rs71453928    T    TACTG    1370.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=83.2149;IndelType=I;MQ=56.55;MQ0=0;QD=54.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    1/1:6,18:25:57.19:1412,57,0
11    9812236    rs2645029    G    A    4796.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.115;MQ=59.84;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    1/1:0,147:147:99:4796,352,0
11    9834403    rs4910066    A    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:75,0,34
11    9834428    rs4910506    C    G    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:69,0,28
11    9860896    rs71476850    A    G    301.51    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.768;QD=21.54;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    0/1:4,10:14:99:332,0,128
11    9861009    rs7483882    G    A    543.73    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=2.394;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7295;MQ=59.67;MQ0=0;MQRankSum=-0.984;QD=7.77;ReadPosRankSum=0.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    0/1:46,24:70:99:574,0,1514
11    9871849    rs4424662    C    T    169.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7873;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=15.39;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    0/1:5,6:11:99:199,0,169
11    9875353    rs375686    G    T    899.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    1/1:0,24:24:72.20:932,72,0
11    9878332    rs67867209    AT    A    66.61    QDFilter2    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.356;DB;DP=57;FS=0.0;HRun=20;HaplotypeScore=516.7041;IndelType=D;MQ=47.01;MQ0=0;MQRankSum=1.259;QD=1.15;ReadPosRankSum=2.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    0/1:36,13:57:28.13:106,0,28
11    9917620    rs4910073    G    C    1007.38    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.674;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.534;QD=17.07;ReadPosRankSum=-0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    0/1:25,34:59:99:1037,0,879
11    10215598    rs4910097    C    T    705.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256190    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:738,54,0
11    10500334    rs36106536    T    C    216.47    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.184;QD=13.53;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532250    GT:AD:DP:GQ:PL    0/1:6,10:16:99:246,0,159
11    10503411    rs11042835    G    A    54.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.922;QD=6.86;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532250    GT:AD:DP:GQ:PL    0/1:4,4:8:84.87:85,0,126
11    10503736    rs11042836    C    T    745.12    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.133;DB;DP=60;Dels=0.0;FS=8.118;HRun=0;HaplotypeScore=1.6624;MQ=59.62;MQ0=0;MQRankSum=-0.279;QD=12.42;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=R185W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10503610_10503772;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396553    GT:AD:DP:GQ:PL    0/1:35,25:60:99:775,0,854
11    10503881    rs7937988    A    G    374.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529835    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:407,30,0
11    10506259    rs7128132    A    G    114.08    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.681;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.371;QD=5.43;ReadPosRankSum=1.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529835    GT:AD:DP:GQ:PL    0/1:15,6:21:99:144,0,477
11    10506297    rs11042843    C    T    624.43    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.492;QD=21.53;ReadPosRankSum=1.623;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529835    GT:AD:DP:GQ:PL    0/1:9,20:29:99:654,0,283
11    10508564    rs35410520    T    C    114.29    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=19.05;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524866    GT:AD:DP:GQ:PL    0/1:1,5:6:27.18:144,0,27
11    10508938    rs3802917    T    C    827.52    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.413;DB;DP=85;Dels=0.0;FS=3.167;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.82;QD=9.74;ReadPosRankSum=-1.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524866    GT:AD:DP:GQ:PL    0/1:46,39:85:99:858,0,1538
11    10516994    rs7105307    G    C    94.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396553    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
11    10517039    rs35753139    C    T    228.50    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=25.39;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396553    GT:AD:DP:GQ:PL    0/1:2,7:9:50.27:258,0,50
11    10518289    rs1466426    T    C    208.23    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.659;DB;DP=20;Dels=0.0;FS=2.086;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.424;QD=10.41;ReadPosRankSum=-0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533116    GT:AD:DP:GQ:PL    0/1:12,8:20:99:238,0,367
11    10518521    rs2071016    C    T    422.88    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=2.32;DB;DP=43;Dels=0.0;FS=5.551;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.283;QD=9.83;ReadPosRankSum=0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533116    GT:AD:DP:GQ:PL    0/1:29,14:43:99:453,0,816
11    10518615    rs11042853    G    A    233.57    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.454;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.445;QD=12.29;ReadPosRankSum=-1.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533116    GT:AD:DP:GQ:PL    0/1:11,8:19:99:264,0,383
11    10521764    rs3741041    T    C    951.91    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.162;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.47;MQ0=0;MQRankSum=-1.476;QD=10.94;ReadPosRankSum=-0.882;SNPEFF_AMINO_ACID_CHANGE=Y404;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10521633_10521796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444303    GT:AD:DP:GQ:PL    0/1:49,38:87:99:982,0,1528
11    10521850    rs3741039    G    A    181.24    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.603;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=5.85;ReadPosRankSum=1.149;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533116    GT:AD:DP:GQ:PL    0/1:22,8:31:99:211,0,810
11    10521948    rs3741038    C    T    129.05    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.186;QD=11.73;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533116    GT:AD:DP:GQ:PL    0/1:6,5:11:99:159,0,189
11    10521997    rs3741037    C    T    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533116    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:71,0,30
11    10522978    rs10840430    G    T    230.18    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.669;DB;DP=21;Dels=0.0;FS=5.18;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.669;QD=10.96;ReadPosRankSum=1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396553    GT:AD:DP:GQ:PL    0/1:10,11:21:99:260,0,312
11    10522983    rs63371362    G    T    166.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=22;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.985;QD=7.57;ReadPosRankSum=-1.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396553    GT:AD:DP:GQ:PL    0/1:11,11:22:99:197,0,285
11    10526060    rs7943804    C    T    2896.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=33.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRNR2L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536684    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2930,235,0
11    10536724    rs6484344    T    C    157.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=17.45;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528665    GT:AD:DP:GQ:PL    0/1:3,6:9:89.73:187,0,90
11    10546628    rs113967377    G    GA    215.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.296;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=25.3852;IndelType=I;MQ=56.13;MQ0=0;MQRankSum=0.825;QD=17.94;ReadPosRankSum=-0.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530156    GT:AD:DP:GQ:PL    0/1:3,9:12:16.21:254,0,16
11    10552022    rs4910152    G    C    203.05    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=29.01;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265981    GT:AD:DP:GQ:PL    0/1:1,6:7:17.51:233,0,18
11    10555589    rs1065052    A    G    769.35    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.694;DB;DP=65;Dels=0.0;FS=2.347;HRun=0;HaplotypeScore=0.9332;MQ=59.71;MQ0=0;MQRankSum=-1.517;QD=11.84;ReadPosRankSum=-1.07;SNPEFF_AMINO_ACID_CHANGE=L39;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10555563_10555752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF141;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265981    GT:AD:DP:GQ:PL    0/1:34,31:65:99:799,0,1151
11    10563125    rs1462942    G    C    167.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.95;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF141;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265981    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
11    10598395    rs3741034    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308763    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    10603648    rs2288236    A    G    299.17    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=23.01;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308763    GT:AD:DP:GQ:PL    0/1:4,9:13:99:329,0,128
11    10614911    rs3741033    C    G    56.30    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=4.02;ReadPosRankSum=-1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308763    GT:AD:DP:GQ:PL    0/1:10,4:14:86.29:86,0,366
11    10624983    rs12280275    C    T    76.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.37;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308763    GT:AD:DP:GQ:PL    0/1:2,3:5:61.54:107,0,62
11    10631247    rs3741042    C    T    915.03    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.7;DB;DP=54;Dels=0.0;FS=2.587;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.191;QD=16.95;ReadPosRankSum=-0.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533631    GT:AD:DP:GQ:PL    0/1:22,32:54:99:945,0,638
11    10645289    rs61892975    A    G    471.79    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.653;DB;DP=45;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=2.9724;MQ=60.0;MQ0=0;MQRankSum=1.046;QD=10.48;ReadPosRankSum=0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308763    GT:AD:DP:GQ:PL    0/1:26,19:45:99:502,0,843
11    10645569    rs2303402    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308763    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
11    10647702    rs2241489    G    A    242.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=16.15;ReadPosRankSum=-0.533;SNPEFF_AMINO_ACID_CHANGE=L302;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10647513_10648130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527509    GT:AD:DP:GQ:PL    0/1:6,9:15:99:272,0,144
11    10649161    rs1425152    C    A    451.62    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.534;QD=14.57;ReadPosRankSum=-0.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529547    GT:AD:DP:GQ:PL    0/1:16,15:31:99:482,0,557
11    10650329    rs2278125    C    T    64.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=10;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.684;QD=6.44;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=R116;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10650298_10650375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527509    GT:AD:DP:GQ:PL    0/1:6,4:10:94.37:94,0,182
11    10653426    rs10840450    A    G    236.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.507;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=11.8;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529547    GT:AD:DP:GQ:PL    0/1:12,8:20:99:266,0,419
11    10653729    rs3741032    C    G    99.86    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=60.98;MQ0=0;MQRankSum=0.466;QD=9.08;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308763    GT:AD:DP:GQ:PL    0/1:5,6:11:99:130,0,131
11    10655609    rs2162044    C    T    1156.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.36;MQ0=0;QD=32.12;SNPEFF_AMINO_ACID_CHANGE=A27T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10655515_10655618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529547    GT:AD:DP:GQ:PL    1/1:1,35:36:93.26:1189,93,0
11    10655623    rs11042902    C    T    537.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.28;MQ0=0;MQRankSum=-0.138;QD=16.8;ReadPosRankSum=1.838;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000526414    GT:AD:DP:GQ:PL    0/1:16,16:32:99:568,0,422
11    10673739    rs4909945    T    C    329.42    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.682;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.83;MQ0=0;MQRankSum=-0.367;QD=9.15;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=I11V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10673572_10673848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRVI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308763    GT:AD:DP:GQ:PL    0/1:20,16:36:99:359,0,558
11    10773049    rs2279697    G    A    234.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=26.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361367    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:267,24,0
11    10777031    rs4910187    T    C    200.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361367    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:234,18,0
11    10786023    rs3830388    A    AAGTTG    1922.09    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.927;DB;DP=47;FS=5.944;HRun=0;HaplotypeScore=191.4715;IndelType=I;MQ=56.17;MQ0=0;MQRankSum=-0.407;QD=40.9;ReadPosRankSum=-0.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524523    GT:AD:DP:GQ:PL    0/1:28,19:47:99:1961,0,968
11    10786142    rs3736326    C    T    627.99    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=34;Dels=0.0;FS=3.176;HRun=0;HaplotypeScore=0.9159;MQ=57.94;MQ0=0;MQRankSum=-1.102;QD=18.47;ReadPosRankSum=1.032;SNPEFF_AMINO_ACID_CHANGE=H487;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10786095_10786278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTR9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361367    GT:AD:DP:GQ:PL    0/1:14,20:34:99:658,0,338
11    10786175    rs7118399    C    T    259.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.172;DB;DP=33;Dels=0.0;FS=14.663;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=-0.745;QD=7.86;ReadPosRankSum=-0.516;SNPEFF_AMINO_ACID_CHANGE=T498;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10786095_10786278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTR9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361367    GT:AD:DP:GQ:PL    0/1:22,11:33:99:289,0,645
11    10789117    rs1811656    A    C    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524523    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
11    10795803    rs7103774    G    T    2468.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTR9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361367    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2502,184,0
11    10820384    rs4909953    A    C    309.94    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.275;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=12.91;ReadPosRankSum=-1.738;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379653    GT:AD:DP:GQ:PL    0/1:13,11:24:99:340,0,464
11    10820663    rs72126089    TAA    T    324.44    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.578;DB;DP=71;FS=1.283;HRun=17;HaplotypeScore=455.549;IndelType=D;MQ=54.91;MQ0=0;MQRankSum=0.587;QD=4.57;ReadPosRankSum=0.404;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524932    GT:AD:DP:GQ:PL    0/1:35,19:71:99:363,0,151
11    10822350    rs7951708    C    T    1578.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_AMINO_ACID_CHANGE=P29;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10822278_10822382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531180    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1611,120,0
11    10823038    rs7103202    G    A    660.79    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.305;DB;DP=63;Dels=0.0;FS=2.338;HRun=0;HaplotypeScore=0.9989;MQ=59.63;MQ0=0;MQRankSum=0.592;QD=10.49;ReadPosRankSum=-0.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524932    GT:AD:DP:GQ:PL    0/1:37,26:63:99:691,0,1209
11    10823576    .    C    CACACTCCTAAAATA    2314.32    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.224;DP=120;FS=2.813;HRun=0;HaplotypeScore=5525.6027;IndelType=I;MQ=37.55;MQ0=0;MQRankSum=2.629;QD=19.29;ReadPosRankSum=-0.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524932    GT:AD:DP:GQ:PL    0/1:65,39:120:99:2353,0,360
11    10823577    .    A    T    578.34    HaplotypeScoreFilter13;MQFilter40    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.39;DP=120;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=44.9839;MQ=37.55;MQ0=0;MQRankSum=3.999;QD=4.82;ReadPosRankSum=-6.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524932    GT:AD:DP:GQ:PL    0/1:89,19:120:99:608,0,969
11    10823815    rs7105210    C    T    2553.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.07;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524932    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2587,190,0
11    10824540    rs10743150    G    A    167.76    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=33;Dels=0.0;FS=2.599;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.068;QD=5.08;ReadPosRankSum=-1.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524932    GT:AD:DP:GQ:PL    0/1:24,9:33:99:198,0,737
11    10825330    rs74543758    T    G    275.16    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.091;DB;DP=18;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.177;QD=15.29;ReadPosRankSum=0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525972    GT:AD:DP:GQ:PL    0/1:7,11:18:99:305,0,231
11    10826256    rs2242361    T    C    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525995    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
11    10827420    rs72854318    C    T    1092.84    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.443;DB;DP=104;Dels=0.0;FS=6.135;HRun=2;HaplotypeScore=0.9469;MQ=59.82;MQ0=0;MQRankSum=1.718;QD=10.51;ReadPosRankSum=0.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533485    GT:AD:DP:GQ:PL    0/1:57,47:104:99:1123,0,1899
11    10828490    rs11373962    T    TA    672.10    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.058;DB;DP=34;FS=0.0;HRun=2;HaplotypeScore=73.188;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=-0.832;QD=19.77;ReadPosRankSum=-1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534246    GT:AD:DP:GQ:PL    0/1:15,19:34:99:711,0,456
11    10876353    rs2232919    T    C    1873.14    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.831;DB;DP=137;Dels=0.0;FS=0.636;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.703;QD=13.67;ReadPosRankSum=2.323;SNPEFF_AMINO_ACID_CHANGE=Q47R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10874411_10876633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBED5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413761    GT:AD:DP:GQ:PL    0/1:70,67:137:99:1903,0,2167
11    10876443    rs2232918    G    A    1093.07    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=87;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.793;QD=12.56;ReadPosRankSum=1.018;SNPEFF_AMINO_ACID_CHANGE=A17V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_10874411_10876633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBED5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413761    GT:AD:DP:GQ:PL    0/1:47,40:87:99:1123,0,1415
11    11348669    rs17435705    G    A    673.11    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.647;DB;DP=64;Dels=0.0;FS=3.47;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.226;QD=10.36;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=V492;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_11348633_11348728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    0/1:38,26:64:99:703,0,1165
11    11348794    rs75793419    C    T    176.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=14.7;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    0/1:6,6:12:99:206,0,205
11    11354346    rs901553    T    C    570.72    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.218;DB;DP=49;Dels=0.0;FS=6.04;HRun=0;HaplotypeScore=1.981;MQ=60.0;MQ0=0;MQRankSum=-1.024;QD=11.65;ReadPosRankSum=1.19;SNPEFF_AMINO_ACID_CHANGE=A437;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_11354241_11354378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    0/1:26,23:49:99:601,0,865
11    11354393    rs901554    A    G    1540.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1573,117,0
11    11373441    rs10765839    G    A    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.11;MQ0=1;QD=17.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:100,9,0
11    11373508    rs7948121    T    C    234.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.44;MQ0=2;QD=16.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    1/1:0,14:14:24.07:267,24,0
11    11373587    rs7945066    A    G    869.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.53;MQ0=2;QD=26.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    1/1:0,33:33:69.22:903,69,0
11    11373635    rs1056963    C    T    988.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.86;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    1/1:0,32:32:81.24:1022,81,0
11    11373808    rs1056951    T    G    1154.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.95;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    1/1:0,35:35:96.29:1188,96,0
11    11394371    rs10765843    G    T    44.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=11.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:74,0,36
11    11398698    rs10444245    G    A    445.89    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=3.06;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.44;MQ0=0;MQRankSum=-2.045;QD=10.88;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227756    GT:AD:DP:GQ:PL    0/1:25,16:41:99:476,0,660
11    11905993    rs10765894    C    T    500.83    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.553;DB;DP=44;Dels=0.0;FS=4.334;HRun=0;HaplotypeScore=0.734;MQ=59.48;MQ0=0;MQRankSum=1.702;QD=11.38;ReadPosRankSum=0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339865    GT:AD:DP:GQ:PL    0/1:27,17:44:99:531,0,858
11    11913585    rs11022079    G    T    845.89    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.019;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.722;QD=12.63;ReadPosRankSum=1.249;SNPEFF_AMINO_ACID_CHANGE=G143V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_11913515_11913653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527733    GT:AD:DP:GQ:PL    0/1:35,32:67:99:876,0,1109
11    11954444    rs10765909    A    G    115.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=11.59;ReadPosRankSum=-1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339865    GT:AD:DP:GQ:PL    0/1:5,5:10:99:146,0,178
11    11954786    rs10741562    G    A    159.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339865    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:192,15,0
11    11972054    rs11022090    A    G    2391.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530041    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2424,190,0
11    11976628    rs7933089    G    A    2435.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=Q1202;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_11976581_11976711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP47;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339865    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2469,190,0
11    11986061    rs3206824    T    C    2932.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.832;MQ=58.91;MQ0=0;QD=27.66;SNPEFF_AMINO_ACID_CHANGE=R278G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_11984653_11986233;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DKK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366345    GT:AD:DP:GQ:PL    1/1:0,106:106:99:2965,226,0
11    11988307    rs7480000    G    C    82.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DKK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529338    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:114,9,0
11    11988839    rs1472190    C    T    94.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DKK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529338    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
11    11989899    rs2291599    T    C    733.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DKK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529338    GT:AD:DP:GQ:PL    1/1:0,20:20:60.16:766,60,0
11    12020115    rs3750939    C    T    39.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DKK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530694    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:70,0,34
11    12225829    .    G    T    91.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.845;DP=36;Dels=0.0;FS=30.134;HRun=2;HaplotypeScore=0.0;MQ=46.3;MQ0=0;MQRankSum=-1.212;QD=2.53;ReadPosRankSum=0.685;SNPEFF_AMINO_ACID_CHANGE=L99F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12225797_12226004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256194    GT:AD:DP:GQ:PL    0/1:12,24:36:99:121,0,401
11    12225946    rs3763823    T    G    811.83    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.35;DB;DP=80;Dels=0.0;FS=3.066;HRun=2;HaplotypeScore=0.9916;MQ=55.46;MQ0=0;MQRankSum=0.227;QD=10.15;ReadPosRankSum=0.277;SNPEFF_AMINO_ACID_CHANGE=R138;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12225797_12226004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256194    GT:AD:DP:GQ:PL    0/1:45,35:80:99:842,0,1391
11    12234704    rs954428    G    A    444.84    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.503;DB;DP=26;Dels=0.0;FS=2.84;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.87;QD=17.11;ReadPosRankSum=-0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531732    GT:AD:DP:GQ:PL    0/1:10,16:26:99:475,0,309
11    12238025    rs2306728    A    G    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524730    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    12242030    rs4237704    A    G    163.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.276;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=0.201;QD=10.87;ReadPosRankSum=-2.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524730    GT:AD:DP:GQ:PL    0/1:7,7:15:99:193,0,220
11    12262476    rs2641936    C    A    1471.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256194    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1505,120,0
11    12264140    rs880963    A    C    428.17    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9987;MQ=59.25;MQ0=0;MQRankSum=-0.622;QD=13.81;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256194    GT:AD:DP:GQ:PL    0/1:15,16:31:99:458,0,490
11    12265906    rs2641934    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525216    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    12270917    rs3751029    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256194    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
11    12270932    rs3829265    A    G    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256194    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
11    12279937    rs2270513    T    C    449.79    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.637;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.933;QD=14.99;ReadPosRankSum=-0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525075    GT:AD:DP:GQ:PL    0/1:16,14:30:99:480,0,517
11    12313887    rs1874043    C    G    720.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=30.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533534    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:753,57,0
11    12315335    rs79609470    C    A    361.20    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=68;Dels=0.0;FS=9.665;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.289;QD=5.31;ReadPosRankSum=0.464;SNPEFF_AMINO_ACID_CHANGE=A119;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12315108_12316404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:48,20:68:99:391,0,1589
11    12315407    rs10741579    G    C    1164.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=G143;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12315108_12316404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    1/1:0,35:35:96.30:1198,96,0
11    12315716    rs1493951    C    T    1522.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_AMINO_ACID_CHANGE=A246;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12315108_12316404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1555,117,0
11    12315891    rs1493953    G    A    3791.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=35.44;SNPEFF_AMINO_ACID_CHANGE=A305T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12315108_12316404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3792,286,0
11    12315915    rs1493954    A    G    1545    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.896;DB;DP=127;Dels=0.0;FS=2.35;HRun=1;HaplotypeScore=0.9159;MQ=59.49;MQ0=0;MQRankSum=0.191;QD=12.17;ReadPosRankSum=0.118;SNPEFF_AMINO_ACID_CHANGE=S313G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12315108_12316404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:66,61:127:99:1575,0,1997
11    12316344    .    GCTCCTC    G    480.08    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.393;DP=27;FS=0.0;HRun=0;HaplotypeScore=161.5477;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=-1.741;QD=17.78;ReadPosRankSum=-1.044;SNPEFF_AMINO_ACID_CHANGE=APP456A;SNPEFF_CODON_CHANGE=gctcctcct/gct;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_11_12315108_12316404;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:19,8:27:66.98:519,0,67
11    12341118    .    T    G    90.02    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=6.5511;MQ=45.68;MQ0=0;MQRankSum=-2.6;QD=2.57;ReadPosRankSum=2.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:12,22:35:99:120,0,138
11    12341166    rs143953718    G    T    813.67    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.301;DB;DP=93;Dels=0.0;FS=1.239;HRun=0;HaplotypeScore=0.734;MQ=55.69;MQ0=0;MQRankSum=1.794;QD=8.75;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:53,40:93:99:844,0,1411
11    12341212    rs79919000    A    C    1894.79    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.762;DB;DP=179;Dels=0.0;FS=1.342;HRun=1;HaplotypeScore=0.7887;MQ=58.09;MQ0=0;MQRankSum=-0.9;QD=10.59;ReadPosRankSum=0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:107,72:179:99:1925,0,3328
11    12345459    rs903213    C    T    716.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:749,57,0
11    12371595    rs7951657    A    G    38.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.79;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:3,2:5:68.95:69,0,95
11    12379792    rs10741583    G    C    745.40    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=2.161;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.84;MQ0=0;MQRankSum=0.083;QD=14.91;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:21,29:50:99:775,0,685
11    12380132    rs3045408    T    TAA    1097.84    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.127;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=102.9556;IndelType=I;MQ=60.28;MQ0=0;MQRankSum=0.042;QD=28.15;ReadPosRankSum=-1.338;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MICALCL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256186    GT:AD:DP:GQ:PL    0/1:18,20:39:99:1137,0,764
11    12495575    rs2288290    C    G    384.09    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=38;Dels=0.0;FS=13.898;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=-0.427;QD=10.11;ReadPosRankSum=-0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334956    GT:AD:DP:GQ:PL    0/1:20,18:38:99:414,0,526
11    12495607    rs2288291    T    C    626.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.2;MQ0=0;QD=24.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334956    GT:AD:DP:GQ:PL    1/1:0,26:26:60.14:659,60,0
11    12495623    rs7109678    G    C    527.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334956    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:560,42,0
11    12499254    rs72520154    A    AC    270.13    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.292;DB;DP=22;FS=0.0;HRun=4;HaplotypeScore=90.9136;IndelType=I;MQ=57.87;MQ0=0;MQRankSum=0.228;QD=12.28;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334956    GT:AD:DP:GQ:PL    0/1:13,9:22:99:309,0,311
11    12517935    rs11406960    G    GT    284.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;FS=2.616;HRun=1;HaplotypeScore=30.0481;IndelType=I;MQ=58.98;MQ0=0;MQRankSum=2.18;QD=23.73;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334956    GT:AD:DP:GQ:PL    0/1:4,8:12:99:324,0,120
11    12518237    rs12223547    G    T    317.68    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.317;QD=15.13;ReadPosRankSum=1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334956    GT:AD:DP:GQ:PL    0/1:10,11:21:99:348,0,312
11    12534707    rs2243707    G    A    819.62    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.418;DB;DP=60;Dels=0.0;FS=2.17;HRun=0;HaplotypeScore=1.6439;MQ=60.0;MQ0=0;MQRankSum=-0.327;QD=13.66;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=R244Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12534700_12534712;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539723    GT:AD:DP:GQ:PL    0/1:33,27:60:99:850,0,915
11    12534808    rs2403631    A    G    3185.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528916    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3218,274,0
11    12535415    rs11022380    A    G    633.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.3;MQ0=0;QD=30.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528916    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:667,57,0
11    12535485    rs56043920    CACAGGCTCCTGCACTA    C    1966.52    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=5.038;DB;DP=36;FS=4.247;HRun=0;HaplotypeScore=503.515;IndelType=D;MQ=51.73;MQ0=0;MQRankSum=-3.722;QD=54.63;ReadPosRankSum=1.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528916    GT:AD:DP:GQ:PL    0/1:21,15:36:99:2006,0,4800
11    12886540    rs10500764    C    T    181.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.493;QD=13.94;ReadPosRankSum=2.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334310    GT:AD:DP:GQ:PL    0/1:7,6:13:99:211,0,197
11    12902243    rs2304731    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334310    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    12903443    rs2304733    C    T    655.22    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.671;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.528;QD=14.24;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=D156;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_12903443_12903504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361905    GT:AD:DP:GQ:PL    0/1:22,24:46:99:685,0,623
11    12951623    rs2245140    A    C    253.19    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.448;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=16.88;ReadPosRankSum=-0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334310    GT:AD:DP:GQ:PL    0/1:7,8:15:99:283,0,245
11    12951926    rs2727360    A    G    1210.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334310    GT:AD:DP:GQ:PL    1/1:0,35:35:93.27:1244,93,0
11    12952015    rs2727361    C    T    78.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=11.16;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334310    GT:AD:DP:GQ:PL    0/1:3,4:7:94.42:108,0,94
11    13032511    rs55909156    G    C    372.23    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.03;MQ0=0;MQRankSum=1.256;QD=12.01;ReadPosRankSum=0.251;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RASSF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340901    GT:AD:DP:GQ:PL    0/1:17,14:31:99:402,0,560
11    13388071    rs191114993    T    A    436.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.037;QD=14.56;ReadPosRankSum=0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530357    GT:AD:DP:GQ:PL    0/1:15,15:30:99:467,0,528
11    13398129    rs10741617    T    A    3916.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9984;MQ=59.8;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=W455R;SNPEFF_CODON_CHANGE=Tgg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_13398092_13398275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNTL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389708    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3917,292,0
11    13399791    rs10832030    A    G    209.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.368;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.788;QD=13.08;ReadPosRankSum=-1.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529390    GT:AD:DP:GQ:PL    0/1:8,8:16:99:239,0,230
11    13438599    rs11022811    C    T    341.74    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.277;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.385;QD=14.86;ReadPosRankSum=-0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526841    GT:AD:DP:GQ:PL    0/1:12,11:23:99:372,0,429
11    13514263    rs6254    C    T    490.07    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.307;DB;DP=31;Dels=0.0;FS=1.509;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=15.81;ReadPosRankSum=-2.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282091    GT:AD:DP:GQ:PL    0/1:15,16:31:99:520,0,441
11    13514417    rs694    C    T    395.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.804;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=14.13;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282091    GT:AD:DP:GQ:PL    0/1:14,14:28:99:426,0,465
11    13514505    rs177706    C    T    97.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=13.96;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282091    GT:AD:DP:GQ:PL    0/1:3,4:7:83.50:128,0,83
11    13716182    rs12282039    G    A    37.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.44;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354817    GT:AD:DP:GQ:PL    0/1:2,2:4:67.77:68,0,72
11    13716530    rs7130943    A    G    136.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.515;DB;DP=18;Dels=0.0;FS=2.762;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=7.56;ReadPosRankSum=-0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354817    GT:AD:DP:GQ:PL    0/1:12,6:18:99:166,0,443
11    13734555    rs12798176    T    C    2212.91    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.254;DB;DP=176;Dels=0.0;FS=1.19;HRun=1;HaplotypeScore=0.9933;MQ=59.74;MQ0=0;MQRankSum=1.62;QD=12.57;ReadPosRankSum=-0.833;SNPEFF_AMINO_ACID_CHANGE=T310;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_13734513_13734580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354817    GT:AD:DP:GQ:PL    0/1:94,81:176:99:2243,0,2872
11    13735989    rs138697039    AT    A    150.30    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.266;DB;DP=20;FS=0.0;HRun=11;HaplotypeScore=75.4014;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.674;QD=7.51;ReadPosRankSum=-0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524933    GT:AD:DP:GQ:PL    0/1:10,10:20:99:189,0,227
11    13984583    rs3761859    C    T    122.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.38;SNPEFF_AMINO_ACID_CHANGE=C44;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_13983914_13984689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310358    GT:AD:DP:GQ:PL    1/1:0,5:6:12.04:155,12,0
11    14101241    rs28660090    T    A    40.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=0.0;QD=5.8;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310358    GT:AD:DP:GQ:PL    0/1:4,3:7:56.06:71,0,56
11    14101493    rs5789820    G    GC    7135.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=163;FS=0.0;HRun=1;HaplotypeScore=341.8463;IndelType=I;MQ=59.68;MQ0=0;QD=43.78;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000310358    GT:AD:DP:GQ:PL    1/1:1,162:163:99:7136,479,0
11    14101750    rs7950377    C    T    195.91    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=3.356;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.656;QD=9.33;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310358    GT:AD:DP:GQ:PL    0/1:13,8:21:99:226,0,397
11    14246296    rs1025412    G    A    258.69    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=16.17;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310358    GT:AD:DP:GQ:PL    0/1:7,9:16:99:289,0,211
11    14264916    rs2303973    A    G    1417.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=Q287;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_14264878_14264942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310358    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1451,105,0
11    14278049    rs3763950    T    A    217.72    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=16.75;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPON1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310358    GT:AD:DP:GQ:PL    0/1:6,7:13:99:248,0,210
11    14300759    rs8570    C    G    52.25    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=39.81;MQ0=1;MQRankSum=-1.537;QD=7.46;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531421    GT:AD:DP:GQ:PL    0/1:3,4:7:82.25:82,0,104
11    14303282    rs2303972    T    A    770.03    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.743;DB;DP=59;Dels=0.0;FS=1.039;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.102;QD=13.05;ReadPosRankSum=0.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256196    GT:AD:DP:GQ:PL    0/1:33,26:59:99:800,0,1004
11    14315915    rs34238445    C    T    169.02    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9936;MQ=53.6;MQ0=0;MQRankSum=-0.377;QD=13.0;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526717    GT:AD:DP:GQ:PL    0/1:7,6:13:99:199,0,250
11    14315918    rs5789833    A    AT    285.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.29;DB;DP=13;FS=0.0;HRun=10;HaplotypeScore=66.0946;IndelType=I;MQ=54.52;MQ0=0;MQRankSum=0.579;QD=21.97;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526717    GT:AD:DP:GQ:PL    1/1:2,11:13:11.44:327,11,0
11    14480292    rs12576926    C    T    587.12    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.97;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4911;MQ=55.01;MQ0=0;MQRankSum=1.339;QD=9.03;ReadPosRankSum=0.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526527    GT:AD:DP:GQ:PL    0/1:29,30:65:99:617,0,756
11    14497269    rs2597194    C    T    412.48    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=26;Dels=0.0;FS=2.366;HRun=2;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=-1.106;QD=15.86;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534234    GT:AD:DP:GQ:PL    0/1:12,14:26:99:442,0,386
11    14501296    rs2575857    C    T    276.56    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.03;MQ0=0;MQRankSum=-1.025;QD=11.52;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249923    GT:AD:DP:GQ:PL    0/1:14,10:24:99:307,0,437
11    14504774    rs111574890    CCACA    C    201.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=95.2272;IndelType=D;MQ=49.5;MQ0=0;MQRankSum=1.447;QD=16.77;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249923    GT:AD:DP:GQ:PL    0/1:6,5:12:99:240,0,177
11    14512060    rs2597189    C    T    809.50    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.076;DB;DP=43;Dels=0.0;FS=5.434;HRun=3;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.897;QD=18.83;ReadPosRankSum=-1.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529210    GT:AD:DP:GQ:PL    0/1:18,25:43:99:839,0,550
11    14516002    .    T    TA    152.82    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=5.427;DP=50;FS=1.646;HRun=0;HaplotypeScore=335.3614;IndelType=I;MQ=56.2;MQ0=0;MQRankSum=-0.784;QD=3.06;ReadPosRankSum=1.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249923    GT:AD:DP:GQ:PL    0/1:33,17:50:99:192,0,926
11    14520549    rs11023239    G    A    69.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=9.87;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249923    GT:AD:DP:GQ:PL    0/1:4,3:7:63.73:99,0,64
11    14532338    rs2597218    C    T    242.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=20.2;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526443    GT:AD:DP:GQ:PL    0/1:4,8:12:99:272,0,129
11    14535575    rs146058891    T    C    69.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.0;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526443    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,144
11    14539315    rs112543342    TA    T    77.90    QDFilter2    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DB;DP=41;FS=12.161;HRun=16;HaplotypeScore=313.8955;IndelType=D;MQ=55.16;MQ0=0;MQRankSum=1.506;QD=1.9;ReadPosRankSum=1.622;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532256    GT:AD:DP:GQ:PL    0/1:21,17:41:99:117,0,213
11    14540671    rs1823466    A    G    2188.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396393    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2221,166,0
11    14540942    rs2305305    C    T    710.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.43;DB;DP=70;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=10.15;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396394    GT:AD:DP:GQ:PL    0/1:40,30:70:99:740,0,1295
11    14632570    rs1403247    A    C    667.05    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.868;DB;DP=36;Dels=0.0;FS=3.362;HRun=1;HaplotypeScore=2.3668;MQ=59.48;MQ0=0;MQRankSum=-0.525;QD=18.53;ReadPosRankSum=-0.557;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528018    GT:AD:DP:GQ:PL    0/1:16,20:36:99:697,0,350
11    14810762    rs4757268    A    G    612.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.809;DB;DP=55;Dels=0.0;FS=1.105;HRun=1;HaplotypeScore=0.7887;MQ=59.58;MQ0=0;MQRankSum=-0.283;QD=11.14;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=R412;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_14810652_14810788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455098    GT:AD:DP:GQ:PL    0/1:33,22:55:99:643,0,1032
11    14825704    rs3740823    A    G    159.15    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=19.89;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282096    GT:AD:DP:GQ:PL    0/1:2,6:8:60.17:189,0,60
11    14852490    rs1037378    G    A    52.25    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.296;QD=5.23;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282096    GT:AD:DP:GQ:PL    0/1:7,3:10:82.25:82,0,219
11    14913575    rs12794714    G    A    466.72    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=29;Dels=0.0;FS=9.204;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.035;QD=16.09;ReadPosRankSum=-1.035;SNPEFF_AMINO_ACID_CHANGE=S59;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_14913527_14913798;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2R1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334636    GT:AD:DP:GQ:PL    0/1:11,18:29:99:497,0,344
11    14989121    rs2956    T    A    138.55    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=11.55;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331587    GT:AD:DP:GQ:PL    0/1:5,7:12:99:169,0,175
11    14991539    rs5239    T    C    1314.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=N57D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_14991481_14991621;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331587    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1347,105,0
11    14991802    rs7925191    A    G    65.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331587    GT:AD:DP:GQ:PL    1/1:0,3:3:9:98,9,0
11    14992598    rs35909067    TAAGAGG    T    612.34    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=21;FS=2.318;HRun=0;HaplotypeScore=172.2794;IndelType=D;MQ=48.46;MQ0=0;MQRankSum=-2.5;QD=29.16;ReadPosRankSum=0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331587    GT:AD:DP:GQ:PL    0/1:11,10:21:99:651,0,1164
11    14992606    rs34294892    A    T    177.30    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.493;DB;DP=23;Dels=0.0;FS=2.291;HRun=1;HaplotypeScore=0.8941;MQ=49.57;MQ0=0;MQRankSum=-2.431;QD=7.71;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331587    GT:AD:DP:GQ:PL    0/1:12,11:23:99:207,0,412
11    15096419    rs1540139    C    T    410.55    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.619;DB;DP=20;Dels=0.0;FS=2.185;HRun=1;HaplotypeScore=2.7636;MQ=57.66;MQ0=0;MQRankSum=0.124;QD=20.53;ReadPosRankSum=-1.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324229    GT:AD:DP:GQ:PL    0/1:6,14:20:99:441,0,185
11    15098718    rs2282653    G    A    307.40    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.06;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.955;QD=18.08;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324229    GT:AD:DP:GQ:PL    0/1:6,11:17:99:337,0,103
11    15170644    rs1714354    T    C    610.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=32.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379554    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:643,48,0
11    15170879    rs1714353    C    T    330.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379554    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
11    15197186    rs1792588    A    G    249.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379554    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
11    15198772    rs1624731    G    T    905.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379554    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:939,72,0
11    15199957    rs1714376    T    C    1625.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7883;MQ=59.53;MQ0=0;MQRankSum=1.155;QD=33.17;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=G181;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_15199870_15199993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379556    GT:AD:DP:GQ:PL    1/1:1,48:49:90.08:1658,90,0
11    15261875    rs2271827    G    C    79.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379554    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
11    15267727    rs1945624    A    G    239.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447214    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
11    16133413    rs4617548    A    G    461.34    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.302;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9621;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=10.03;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=T278;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_16133349_16133469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316399    GT:AD:DP:GQ:PL    0/1:28,17:46:99:491,0,908
11    16205323    rs7926424    T    C    68.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.01;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531297    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:98,0,29
11    16205595    rs1455111    C    T    71.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.289;QD=5.98;ReadPosRankSum=-1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531297    GT:AD:DP:GQ:PL    0/1:8,4:12:99:102,0,213
11    16208200    rs78363793    TC    T    364.10    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=3.672;DB;DP=31;FS=0.0;HRun=2;HaplotypeScore=85.6365;IndelType=D;MQ=60.49;MQ0=0;MQRankSum=1.846;QD=11.75;ReadPosRankSum=-0.774;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531297    GT:AD:DP:GQ:PL    0/1:18,13:31:99:403,0,593
11    16362933    rs67190866    T    C    244.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352083    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:278,24,0
11    16760244    rs1846936    T    G    565.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C11orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525256    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:599,51,0
11    16810599    rs77525146    C    T    257.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=21.42;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525177    GT:AD:DP:GQ:PL    0/1:4,8:12:99:287,0,133
11    16812397    rs35142528    G    A    175.37    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=11.69;ReadPosRankSum=2.04;SNPEFF_AMINO_ACID_CHANGE=P1000;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_16812345_16812462;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:7,8:15:99:205,0,236
11    16822683    rs75163301    C    G    557.28    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=4.523;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.87;MQ0=0;MQRankSum=0.054;QD=13.59;ReadPosRankSum=1.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:21,20:41:99:587,0,627
11    16823059    rs216488    T    C    76.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.73;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:2,4:6:66.83:106,0,67
11    16834510    rs216495    G    A    30.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.08;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:3,2:5:60.40:60,0,113
11    16837788    rs217750    G    A    507.78    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DB;DP=23;Dels=0.0;FS=8.704;HRun=1;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=0.735;QD=22.08;ReadPosRankSum=-0.945;SNPEFF_AMINO_ACID_CHANGE=R630;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_16837725_16837811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:6,17:23:99:538,0,142
11    16847558    rs400458    A    G    346.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.883;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.391;QD=12.38;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:14,14:28:99:377,0,479
11    16848077    rs390974    G    A    660.94    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.859;DB;DP=40;Dels=0.0;FS=4.666;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.451;QD=16.52;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=H311;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_16847667_16848137;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:19,21:40:99:691,0,478
11    16862936    rs430211    C    A    76.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.25;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:106,0,70
11    16863049    rs369457    C    T    702.13    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.864;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.49;MQ0=0;MQRankSum=-0.377;QD=15.6;ReadPosRankSum=0.499;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:21,24:45:99:732,0,628
11    16863087    rs452745    A    G    733.07    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.125;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;MQRankSum=-0.168;QD=12.02;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:29,31:61:99:763,0,819
11    16863362    rs454869    T    A    42.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=8.55;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:2,3:5:68.51:73,0,69
11    16872957    rs381163    A    C    349.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528637    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:382,30,0
11    16873799    rs417406    C    T    452.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=30;Dels=0.0;FS=6.495;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.284;QD=15.08;ReadPosRankSum=1.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528637    GT:AD:DP:GQ:PL    0/1:15,15:30:99:483,0,460
11    16874067    rs418113    C    T    248.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528637    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
11    16876618    rs409354    G    A    148.53    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.5;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:4,5:9:99:179,0,137
11    16877497    rs11024058    C    T    725.43    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=4.899;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=1.116;QD=17.69;ReadPosRankSum=-1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355661    GT:AD:DP:GQ:PL    0/1:18,23:41:99:755,0,536
11    17073813    rs34107322    TC    T    6018.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-5.298;DB;DP=169;FS=2.739;HRun=1;HaplotypeScore=612.4478;IndelType=D;MQ=52.58;MQ0=1;MQRankSum=4.455;QD=34.79;ReadPosRankSum=-0.556;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-466H18.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000333752    GT:AD:DP:GQ:PL    1/1:13,160:169:50.70:6019,51,0
11    17095596    rs16924899    T    C    874.42    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.244;DB;DP=72;Dels=0.0;FS=0.939;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.599;QD=12.14;ReadPosRankSum=-1.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531428    GT:AD:DP:GQ:PL    0/1:39,33:72:99:904,0,1332
11    17096059    rs11024148    A    G    681.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=32.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531428    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:715,54,0
11    17096150    rs7125607    T    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531428    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    17111272    rs10832733    A    G    3326.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=38.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531428    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3326,253,0
11    17113483    rs7113396    C    T    2497.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265970    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2530,184,0
11    17118687    rs11604561    T    C    920.35    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.225;DB;DP=48;Dels=0.0;FS=4.148;HRun=0;HaplotypeScore=1.7886;MQ=59.52;MQ0=0;MQRankSum=-0.564;QD=19.17;ReadPosRankSum=2.119;SNPEFF_AMINO_ACID_CHANGE=T1035A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17118604_17118811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540361    GT:AD:DP:GQ:PL    0/1:18,30:48:99:950,0,596
11    17131918    rs191337971    T    G    163.65    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.325;DB;DP=27;Dels=0.0;FS=25.233;HRun=2;HaplotypeScore=7.9829;MQ=48.72;MQ0=0;MQRankSum=-1.452;QD=6.06;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265970    GT:AD:DP:GQ:PL    0/1:6,21:27:99:194,0,180
11    17166999    rs6486350    A    G    89.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265970    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    17172133    rs2302511    T    C    1482.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5767;MQ=58.62;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=A33;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17172045_17172202;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PIK3C2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540361    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1516,120,0
11    17249805    rs11024204    T    C    173.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528644    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
11    17249953    rs10832746    A    G    856.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528644    GT:AD:DP:GQ:PL    1/1:0,28:28:75.22:890,75,0
11    17250019    rs10832747    G    T    1853.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=33.7;ReadPosRankSum=-1.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528644    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1887,111,0
11    17250814    rs61881881    C    T    31.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=4.47;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528644    GT:AD:DP:GQ:PL    0/1:4,2:7:61.26:61,0,142
11    17333663    rs2521998    G    A    2326.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=S303N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17333575_17333667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323688    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2359,178,0
11    17333891    rs2521997    T    C    37.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
11    17351683    rs757081    C    G    61.53    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.243;DB;DP=16;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=3.85;ReadPosRankSum=-0.546;SNPEFF_AMINO_ACID_CHANGE=Q308E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17351674_17351844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458064    GT:AD:DP:GQ:PL    0/1:12,4:16:91.52:92,0,412
11    17393644    rs12791318    A    G    223.88    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.559;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=9.73;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=H317R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17393553_17398888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-239B22.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338965    GT:AD:DP:GQ:PL    0/1:14,9:23:99:254,0,468
11    17394073    rs10832778    C    G    1746.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-239B22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338965    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1780,135,0
11    17408404    rs5213    C    T    316.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526912    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:349,27,0
11    17408630    rs5215    C    T    1175.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.42;MQ0=0;QD=29.39;SNPEFF_AMINO_ACID_CHANGE=V250I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17407406_17409393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528731    GT:AD:DP:GQ:PL    1/1:0,40:40:90.29:1209,90,0
11    17409069    rs5218    G    A    140.67    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=12;Dels=0.0;FS=10.964;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.532;QD=11.72;ReadPosRankSum=0.825;SNPEFF_AMINO_ACID_CHANGE=A103;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17408917_17409393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526912    GT:AD:DP:GQ:PL    0/1:7,5:12:99:171,0,181
11    17409572    rs5219    T    C    865.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=K23E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17407406_17410206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339994    GT:AD:DP:GQ:PL    1/1:0,28:28:75.21:899,75,0
11    17414715    rs1109591    T    C    149.22    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=13.57;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527905    GT:AD:DP:GQ:PL    0/1:4,7:11:99:179,0,104
11    17415190    rs4148646    C    G    1644.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527905    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1677,129,0
11    17418477    rs757110    C    A    949.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=A1369S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17418463_17418593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389817    GT:AD:DP:GQ:PL    1/1:0,28:28:75.22:982,75,0
11    17419279    rs1799859    C    T    317.34    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.875;DB;DP=28;Dels=0.0;FS=3.771;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.507;QD=11.33;ReadPosRankSum=-0.599;SNPEFF_AMINO_ACID_CHANGE=R1273;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17419231_17419344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389817    GT:AD:DP:GQ:PL    0/1:15,13:28:99:347,0,409
11    17435936    rs4148631    G    A    391.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.022;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=-1.549;QD=13.04;ReadPosRankSum=-1.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:15,15:30:99:421,0,463
11    17435966    rs4148630    G    A    426.25    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.033;DB;DP=43;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=1.9203;MQ=60.0;MQ0=0;MQRankSum=1.399;QD=9.91;ReadPosRankSum=1.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:24,19:43:99:456,0,648
11    17436936    rs4148626    A    G    38.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=6.49;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:4,2:6:68.94:69,0,113
11    17449929    rs1799858    C    T    141.12    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=6.72;ReadPosRankSum=1.189;SNPEFF_AMINO_ACID_CHANGE=K649;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17449836_17449952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:13,8:21:99:171,0,421
11    17464534    rs2073587    T    C    182.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.421;QD=13.06;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:7,7:14:99:213,0,217
11    17481948    rs886291    T    C    604.23    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=39;Dels=0.0;FS=10.387;HRun=0;HaplotypeScore=0.5784;MQ=58.92;MQ0=0;MQRankSum=0.969;QD=15.49;ReadPosRankSum=1.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:20,19:39:99:634,0,595
11    17483038    rs2074317    C    T    106.42    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=8.19;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:7,6:13:99:136,0,256
11    17484971    rs2301703    G    A    208.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
11    17491571    rs10400389    C    T    406.11    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.35;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.05;QD=11.6;ReadPosRankSum=-0.809;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:18,17:35:99:436,0,546
11    17496516    rs1048099    A    G    241.25    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.436;DB;DP=25;Dels=0.0;FS=10.371;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.137;QD=9.65;ReadPosRankSum=2.162;SNPEFF_AMINO_ACID_CHANGE=P69;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17496433_17496574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ABCC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302539    GT:AD:DP:GQ:PL    0/1:14,11:25:99:271,0,442
11    17510404    rs4757526    G    A    145.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=16.2;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,6:9:87.50:176,0,88
11    17510565    rs4757527    A    G    349.66    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.141;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.176;QD=12.49;ReadPosRankSum=1.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318024    GT:AD:DP:GQ:PL    0/1:17,11:28:99:380,0,543
11    17510669    rs4757528    A    C    143.43    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.94;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318024    GT:AD:DP:GQ:PL    0/1:4,5:9:99:173,0,133
11    17515668    rs1055581    T    C    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    17515693    rs1055577    G    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    17515833    rs1055574    A    G    96.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:129,9,0
11    17516038    rs2072227    C    T    77.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.6;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:2,3:5:27.28:108,0,27
11    17517235    rs10832795    A    G    907.37    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.45;MQ0=0;MQRankSum=0.218;QD=21.6;ReadPosRankSum=1.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:13,29:42:99:937,0,376
11    17519742    rs1064074    C    G    897.87    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.792;DB;DP=80;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.73;QD=11.22;ReadPosRankSum=-0.711;SNPEFF_AMINO_ACID_CHANGE=E488D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17519709_17519818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527720    GT:AD:DP:GQ:PL    0/1:44,36:80:99:928,0,1310
11    17522810    rs2072234    T    C    34.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.736;QD=8.61;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:64,0,32
11    17523474    rs17703528    G    A    849.94    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=3.539;DB;DP=54;Dels=0.0;FS=1.054;HRun=0;HaplotypeScore=1.5661;MQ=59.57;MQ0=0;MQRankSum=-1.353;QD=15.74;ReadPosRankSum=-1.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:25,29:54:99:880,0,693
11    17531146    rs17776775    G    A    248.50    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=14;Dels=0.0;FS=6.56;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=17.75;ReadPosRankSum=-0.133;SNPEFF_AMINO_ACID_CHANGE=A590;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17530903_17531385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:5,9:14:99:278,0,162
11    17531449    rs2237965    G    T    315.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530700    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:348,27,0
11    17531831    rs733874    A    T    117.79    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.56;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530700    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:148,0,26
11    17532102    rs2237964    C    T    368.23    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.803;DB;DP=24;Dels=0.0;FS=6.862;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.775;QD=15.34;ReadPosRankSum=-0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530700    GT:AD:DP:GQ:PL    0/1:9,15:24:99:398,0,273
11    17533397    rs2190453    G    A    636.77    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=4.078;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.202;QD=21.96;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530700    GT:AD:DP:GQ:PL    0/1:9,20:29:99:667,0,226
11    17533635    rs2190454    G    A    1534.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530700    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1567,114,0
11    17542583    rs2108332    C    T    2052.74    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.506;DB;DP=177;Dels=0.0;FS=2.089;HRun=0;HaplotypeScore=3.3124;MQ=58.15;MQ0=0;MQRankSum=-0.77;QD=11.6;ReadPosRankSum=0.911;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526181    GT:AD:DP:GQ:PL    0/1:91,86:177:99:2083,0,2478
11    17542586    rs2041031    T    C    2166.21    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.255;DB;DP=177;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3124;MQ=58.29;MQ0=0;MQRankSum=2.272;QD=12.24;ReadPosRankSum=0.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526181    GT:AD:DP:GQ:PL    0/1:86,88:177:99:2196,0,2188
11    17542649    rs2041032    T    C    1836.80    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=100;Dels=0.0;FS=3.862;HRun=1;HaplotypeScore=1.9497;MQ=57.89;MQ0=0;MQRankSum=0.116;QD=18.37;ReadPosRankSum=-1.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526181    GT:AD:DP:GQ:PL    0/1:39,61:100:99:1867,0,1142
11    17545091    rs4757539    A    G    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.43;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,149
11    17548015    rs6486378    C    T    36.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,94
11    17548239    rs72870320    C    T    67.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=7.52;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:6,3:9:97.68:98,0,192
11    17548401    rs5789990    CG    C    292.08    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;FS=5.119;HRun=1;HaplotypeScore=35.2391;IndelType=D;MQ=61.64;MQ0=0;MQRankSum=0.386;QD=22.47;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:4,9:13:99:331,0,153
11    17548507    rs41282940    T    C    126.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
11    17548737    rs12795083    T    C    173.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
11    17553105    rs2041027    G    A    180.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=15;Dels=0.0;FS=5.88;HRun=2;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.533;QD=12.05;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:5,10:15:99:211,0,159
11    17554930    rs878546    T    C    64.30    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.61;MQ0=0;MQRankSum=-2.409;QD=3.38;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=USH1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005226    GT:AD:DP:GQ:PL    0/1:12,7:19:94.29:94,0,390
11    17574588    rs4757543    T    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399391    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    17577223    rs4757544    C    T    522.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.302;QD=30.76;ReadPosRankSum=-1.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428619    GT:AD:DP:GQ:PL    1/1:1,16:17:7.51:555,8,0
11    17579783    rs61611064    C    A    1057.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.38;SNPEFF_AMINO_ACID_CHANGE=A245D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17579732_17579862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    1/1:1,35:36:90.23:1091,90,0
11    17582470    rs1990180    T    C    443.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485669    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:477,36,0
11    17591961    rs10832802    C    T    534.09    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.72;DB;DP=33;Dels=0.0;FS=3.998;HRun=0;HaplotypeScore=3.503;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=16.18;ReadPosRankSum=0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399391    GT:AD:DP:GQ:PL    0/1:16,17:33:99:564,0,447
11    17593709    rs7106548    T    C    197.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.27;SNPEFF_AMINO_ACID_CHANGE=S619P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17593627_17593751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:231,18,0
11    17596313    rs4757548    G    A    773.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_AMINO_ACID_CHANGE=P719;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17596267_17596459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    1/1:0,26:26:60.18:806,60,0
11    17598187    rs4756901    G    A    549.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399391    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:582,42,0
11    17598191    rs4756902    G    A    517.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399391    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:551,42,0
11    17600033    rs2355466    G    A    329.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.46;SNPEFF_AMINO_ACID_CHANGE=A846T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17599920_17600073;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    1/1:0,12:12:30.06:362,30,0
11    17600259    rs2355467    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342528    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    17612972    rs720460    T    G    286.01    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=16;Dels=0.0;FS=5.426;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.177;QD=17.88;ReadPosRankSum=-0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342528    GT:AD:DP:GQ:PL    0/1:7,9:16:99:316,0,198
11    17615728    rs7936484    C    T    982.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.385;DB;DP=60;Dels=0.0;FS=3.956;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.053;QD=16.37;ReadPosRankSum=0.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342528    GT:AD:DP:GQ:PL    0/1:24,36:60:99:1012,0,704
11    17618298    rs7126777    C    T    329.17    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.068;DB;DP=25;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.7887;MQ=58.13;MQ0=0;MQRankSum=0.63;QD=13.17;ReadPosRankSum=-1.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342528    GT:AD:DP:GQ:PL    0/1:14,11:25:99:359,0,498
11    17631751    rs2041028    C    T    394.37    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.519;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.17;ReadPosRankSum=1.09;SNPEFF_AMINO_ACID_CHANGE=P1574L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17631202_17632970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    0/1:11,15:26:99:424,0,340
11    17632651    rs7111528    C    T    173.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=13.37;ReadPosRankSum=1.191;SNPEFF_AMINO_ACID_CHANGE=T1874M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17631202_17632970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    0/1:6,6:13:99:204,0,169
11    17633012    rs731783    T    C    57.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=15;Dels=0.0;FS=2.216;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=3.85;ReadPosRankSum=1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342528    GT:AD:DP:GQ:PL    0/1:10,5:15:87.72:88,0,266
11    17656686    rs11024350    C    T    145.46    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=20.78;ReadPosRankSum=1.495;SNPEFF_AMINO_ACID_CHANGE=L2488;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17656627_17656734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    0/1:2,5:7:58.56:175,0,59
11    17663444    rs10832824    C    T    160.85    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.21;MQ0=0;MQRankSum=0.91;QD=10.72;ReadPosRankSum=-0.201;SNPEFF_AMINO_ACID_CHANGE=C2686;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17663394_17663498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    0/1:8,7:15:99:191,0,192
11    17667439    rs11024357    G    C    401.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.11;SNPEFF_AMINO_ACID_CHANGE=W2836S;SNPEFF_CODON_CHANGE=tGg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17667291_17668697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399397    GT:AD:DP:GQ:PL    1/1:0,19:19:36.11:434,36,0
11    17809639    rs10788    C    T    702.59    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DB;DP=77;Dels=0.0;FS=1.012;HRun=1;HaplotypeScore=0.9999;MQ=59.76;MQ0=0;MQRankSum=0.449;QD=9.12;ReadPosRankSum=0.932;SNPEFF_AMINO_ACID_CHANGE=G457E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17809595_17809960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERGEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265965    GT:AD:DP:GQ:PL    0/1:48,29:77:99:733,0,1478
11    17809724    rs1528    T    C    850.34    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.372;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=10.12;ReadPosRankSum=0.274;SNPEFF_AMINO_ACID_CHANGE=K429E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17809595_17809960;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERGEF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265965    GT:AD:DP:GQ:PL    0/1:50,34:84:99:880,0,1519
11    17981047    rs211146    C    T    666.69    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.356;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.254;QD=20.2;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=S213;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_17981000_17981183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERGEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529728    GT:AD:DP:GQ:PL    0/1:12,21:33:99:697,0,394
11    18009949    rs211124    C    T    107.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530613    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:140,12,0
11    18017517    rs211131    T    C    214.28    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.635;QD=17.86;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERGEF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524716    GT:AD:DP:GQ:PL    0/1:5,7:12:99:244,0,166
11    18044304    rs211101    C    T    450.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250018    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:483,36,0
11    18044648    rs10741734    A    G    34.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.37;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250018    GT:AD:DP:GQ:PL    0/1:1,2:3:21.57:64,0,22
11    18047255    rs1799913    G    T    913.83    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=59;Dels=0.0;FS=2.448;HRun=0;HaplotypeScore=0.6651;MQ=59.61;MQ0=0;MQRankSum=0.281;QD=15.49;ReadPosRankSum=-1.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528338    GT:AD:DP:GQ:PL    0/1:27,32:59:99:944,0,824
11    18054777    rs10832874    A    G    584.68    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.219;QD=11.46;ReadPosRankSum=-0.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250018    GT:AD:DP:GQ:PL    0/1:29,22:51:99:615,0,968
11    18062482    rs10488682    T    A    150.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528338    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:184,15,0
11    18104986    rs7102017    A    C    117.74    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SAAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300013    GT:AD:DP:GQ:PL    0/1:1,5:6:23.53:148,0,24
11    18105302    rs3741199    T    C    224.58    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.91;DB;DP=21;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.776;QD=10.69;ReadPosRankSum=1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SAAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300013    GT:AD:DP:GQ:PL    0/1:10,11:21:99:255,0,324
11    18108492    rs12363226    T    C    911.77    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.416;DB;DP=58;Dels=0.0;FS=3.697;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=15.72;ReadPosRankSum=0.602;SNPEFF_AMINO_ACID_CHANGE=T210;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18108413_18108601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SAAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531751    GT:AD:DP:GQ:PL    0/1:26,32:58:99:942,0,782
11    18111692    rs11424886    A    AT    729.32    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.329;DB;DP=54;FS=4.861;HRun=8;HaplotypeScore=113.2819;IndelType=I;MQ=58.27;MQ0=0;MQRankSum=-1.272;QD=13.51;ReadPosRankSum=-0.525;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SAAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530736    GT:AD:DP:GQ:PL    0/1:28,26:54:99:768,0,555
11    18127558    .    C    CCGG    254.18    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=8;FS=0.0;HRun=0;HaplotypeScore=24.2703;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=31.77;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=P10PR;SNPEFF_CODON_CHANGE=ccg/ccCCGg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_11_18127454_18127629;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SAAL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300013    GT:AD:DP:GQ:PL    0/1:3,5:8:24.69:293,0,25
11    18159169    rs2468839    A    G    2156    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=S140;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18158725_18160027;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396275    GT:AD:DP:GQ:PL    1/1:0,65:66:99:2189,174,0
11    18159254    rs4274188    A    G    1119.22    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.859;DB;DP=64;Dels=0.0;FS=7.163;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.668;QD=17.49;ReadPosRankSum=0.3;SNPEFF_AMINO_ACID_CHANGE=N169D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18158725_18160027;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396275    GT:AD:DP:GQ:PL    0/1:27,37:64:99:1149,0,748
11    18194827    rs2468774    C    G    2827.54    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=4.357;DB;DP=179;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.5718;MQ=59.34;MQ0=0;MQRankSum=0.539;QD=15.8;ReadPosRankSum=-1.259;SNPEFF_AMINO_ACID_CHANGE=F8L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18194384_18195827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314254    GT:AD:DP:GQ:PL    0/1:80,99:179:99:2858,0,2104
11    18194878    rs2445180    T    G    2099.40    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.667;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8599;MQ=59.35;MQ0=0;MQRankSum=-0.581;QD=14.28;ReadPosRankSum=0.977;SNPEFF_AMINO_ACID_CHANGE=N25K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18194384_18195827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314254    GT:AD:DP:GQ:PL    0/1:70,75:147:99:2129,0,2060
11    18194964    rs1869788    A    G    1297.66    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.925;DB;DP=80;Dels=0.0;FS=3.596;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.614;QD=16.22;ReadPosRankSum=-0.585;SNPEFF_AMINO_ACID_CHANGE=Y54C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18194384_18195827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314254    GT:AD:DP:GQ:PL    0/1:36,44:80:99:1328,0,1127
11    18195051    rs2445179    T    C    1859.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.0;SNPEFF_AMINO_ACID_CHANGE=L83S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18194384_18195827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314254    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1893,156,0
11    18195348    rs11024532    C    T    1167.99    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.049;DB;DP=103;Dels=0.0;FS=1.857;HRun=0;HaplotypeScore=1.8899;MQ=60.0;MQ0=0;MQRankSum=0.164;QD=11.34;ReadPosRankSum=-0.177;SNPEFF_AMINO_ACID_CHANGE=A182V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18194384_18195827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314254    GT:AD:DP:GQ:PL    0/1:60,43:103:99:1198,0,1772
11    18195448    rs4630269    C    T    626.19    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=3.403;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.18;MQ0=0;MQRankSum=-0.509;QD=10.27;ReadPosRankSum=0.288;SNPEFF_AMINO_ACID_CHANGE=Y215;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18194384_18195827;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314254    GT:AD:DP:GQ:PL    0/1:37,24:61:99:656,0,1123
11    18231188    rs56386150    T    TA    311.51    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.502;DB;DP=28;FS=0.0;HRun=13;HaplotypeScore=151.2468;IndelType=I;MQ=57.84;MQ0=0;MQRankSum=0.764;QD=11.13;ReadPosRankSum=1.818;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_18231033_18232217;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-113D6.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340135    GT:AD:DP:GQ:PL    0/1:11,16:28:95.24:351,0,95
11    18231289    rs4757627    C    A    1363.93    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=100;Dels=0.0;FS=0.855;HRun=0;HaplotypeScore=3.5145;MQ=59.54;MQ0=0;MQRankSum=-0.31;QD=13.64;ReadPosRankSum=-0.869;SNPEFF_AMINO_ACID_CHANGE=F25L;SNPEFF_CODON_CHANGE=ttC/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18231033_18232217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-113D6.10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340135    GT:AD:DP:GQ:PL    0/1:51,49:100:99:1394,0,1756
11    18231749    rs2468789    T    G    2436.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.7405;MQ=58.79;MQ0=0;MQRankSum=1.683;QD=33.38;ReadPosRankSum=-0.268;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-113D6.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340135    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2470,202,0
11    18231915    rs2251440    T    C    257.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.078;DB;DP=30;Dels=0.0;FS=3.773;HRun=0;HaplotypeScore=0.0;MQ=54.12;MQ0=0;MQRankSum=-0.242;QD=8.58;ReadPosRankSum=0.242;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-113D6.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340135    GT:AD:DP:GQ:PL    0/1:20,10:30:99:287,0,627
11    18253176    rs2460827    C    T    3282.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=59.76;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=C89Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18252896_18253211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278222    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3283,247,0
11    18267027    rs2468844    C    T    1725.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=R89H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18266775_18267062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1759,132,0
11    18267112    rs2445173    A    G    580    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=0.986;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=60.74;MQ0=0;MQRankSum=-0.528;QD=20.0;ReadPosRankSum=-0.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:10,19:29:99:610,0,286
11    18267135    rs56373142    C    T    88.54    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.34;MQ0=0;MQRankSum=0.227;QD=5.53;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:11,5:16:99:119,0,328
11    18267353    rs2445172    A    G    63.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.0;QD=7.91;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:4,4:8:93.30:93,0,144
11    18267356    rs2445171    A    G    41.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.58;MQ0=1;MQRankSum=-0.55;QD=5.21;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:4,4:8:71.65:72,0,145
11    18267373    rs1671927    C    T    183.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.15;MQ0=1;MQRankSum=1.589;QD=20.38;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:3,6:9:21.17:213,0,21
11    18267431    rs76546965    C    T    503.98    MQFilter40;SnpCluster    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=37;Dels=0.0;FS=3.329;HRun=0;HaplotypeScore=0.0;MQ=38.8;MQ0=1;MQRankSum=0.587;QD=13.62;ReadPosRankSum=2.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:12,25:37:99:534,0,263
11    18267434    rs78891342    A    G    545.83    SnpCluster    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=3.07;DB;DP=38;Dels=0.0;FS=3.111;HRun=0;HaplotypeScore=0.0;MQ=40.61;MQ0=1;MQRankSum=0.684;QD=14.36;ReadPosRankSum=2.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:13,25:38:99:576,0,293
11    18267435    rs75350417    A    G    537.62    SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=39;Dels=0.0;FS=3.12;HRun=0;HaplotypeScore=0.0;MQ=40.16;MQ0=1;MQRankSum=0.615;QD=13.79;ReadPosRankSum=2.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:13,26:39:99:568,0,293
11    18267463    rs74872559    A    G    497.39    MQFilter40    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.605;DB;DP=61;Dels=0.0;FS=9.72;HRun=0;HaplotypeScore=0.0;MQ=38.69;MQ0=2;MQRankSum=1.27;QD=8.15;ReadPosRankSum=-0.616;SNPEFF_AMINO_ACID_CHANGE=V75A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18267457_18267595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:32,29:61:99:527,0,757
11    18267471    rs1136766    A    G    677.01    MQFilter40    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.779;DB;DP=63;Dels=0.0;FS=3.943;HRun=1;HaplotypeScore=0.0;MQ=37.83;MQ0=3;MQRankSum=-1.366;QD=10.75;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=A72;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18267457_18267595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:28,34:63:99:707,0,548
11    18267478    rs79620496    G    A    456.79    MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.548;DB;DP=64;Dels=0.0;FS=7.662;HRun=0;HaplotypeScore=0.8667;MQ=36.71;MQ0=5;MQRankSum=1.597;QD=7.14;ReadPosRankSum=-0.255;SNPEFF_AMINO_ACID_CHANGE=A70V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18267457_18267595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    0/1:37,27:64:99:487,0,811
11    18267651    rs80208174    A    C    431.23    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.919;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.45;MQ0=3;MQRankSum=0.919;QD=21.56;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    1/1:4,16:20:5.15:462,5,0
11    18267702    rs4757631    T    A    266.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.67;MQ0=1;QD=29.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256733    GT:AD:DP:GQ:PL    1/1:1,8:9:24.06:299,24,0
11    18284389    rs2896522    T    G    2409.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=57.32;MQ0=0;QD=28.69;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2443,187,0
11    18290737    rs145097411    T    G    590.37    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.878;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.75;MQ0=24;MQRankSum=-1.127;QD=8.94;ReadPosRankSum=0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    0/1:30,36:66:99:620,0,387
11    18290859    rs1136743    C    T    276.39    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.654;DB;DP=28;Dels=0.0;FS=2.515;HRun=0;HaplotypeScore=0.0;MQ=22.33;MQ0=8;MQRankSum=-0.236;QD=9.87;ReadPosRankSum=-1.748;SNPEFF_AMINO_ACID_CHANGE=A70V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18290742_18290880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    0/1:7,21:28:81.03:306,0,81
11    18290866    rs1136745    T    C    48.02    MQFilter40;QDFilter2    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=25;Dels=0.0;FS=2.515;HRun=1;HaplotypeScore=0.0;MQ=23.24;MQ0=5;MQRankSum=-0.236;QD=1.92;ReadPosRankSum=2.599;SNPEFF_AMINO_ACID_CHANGE=A72;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18290742_18290880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    0/1:18,7:25:78.01:78,0,347
11    18290874    rs1136747    T    C    280.92    MQFilter40    AB=0.227;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=22;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=23.56;MQ0=3;MQRankSum=0.15;QD=12.77;ReadPosRankSum=-1.95;SNPEFF_AMINO_ACID_CHANGE=V75A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18290742_18290880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    0/1:5,17:22:81.02:311,0,81
11    18290880    rs28720026    C    G    410.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.71;MQ0=1;QD=20.54;SNPEFF_AMINO_ACID_CHANGE=T77S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18290742_18290880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    1/1:0,20:20:42.08:444,42,0
11    18290902    rs34068567    T    C    485.52    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.91;MQ0=1;QD=20.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    1/1:1,23:24:45.10:519,45,0
11    18290903    rs35179000    T    C    462.93    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.91;MQ0=1;QD=19.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    1/1:1,23:24:45.09:496,45,0
11    18290906    rs35474820    G    A    510.55    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.83;MQ0=1;QD=22.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    1/1:1,22:23:48.10:544,48,0
11    18291063    rs10832915    T    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
11    18291321    rs12218    T    C    2583.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.107;DB;DP=81;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=1.6918;MQ=60.0;MQ0=0;MQRankSum=0.321;QD=31.9;ReadPosRankSum=-0.962;SNPEFF_AMINO_ACID_CHANGE=A96;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18291264_18291521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    1/1:1,80:81:99:2617,172,0
11    18291528    rs7128060    G    T    551.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356524    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:584,45,0
11    18301605    rs11024601    T    C    225.60    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=20.51;ReadPosRankSum=1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352460    GT:AD:DP:GQ:PL    0/1:4,7:11:99:256,0,130
11    18303404    rs2271997    C    T    471.24    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.446;DB;DP=49;Dels=0.0;FS=3.422;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=1.669;QD=9.62;ReadPosRankSum=1.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352460    GT:AD:DP:GQ:PL    0/1:31,18:49:99:501,0,938
11    18309700    rs1520884    A    G    415.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=37.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349215    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:449,33,0
11    18312953    rs4757638    G    A    181.82    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=1.339;DB;DP=22;Dels=0.0;FS=2.632;HRun=2;HaplotypeScore=0.9998;MQ=58.29;MQ0=0;MQRankSum=-1.269;QD=8.26;ReadPosRankSum=-1.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531848    GT:AD:DP:GQ:PL    0/1:15,7:22:99:212,0,460
11    18314359    rs76929453    G    A    104.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=10.41;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531848    GT:AD:DP:GQ:PL    0/1:6,4:10:99:134,0,216
11    18314579    rs10665418    C    CTT    598.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=7;HaplotypeScore=35.6304;IndelType=I;MQ=60.72;MQ0=0;QD=39.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531848    GT:AD:DP:GQ:PL    1/1:2,13:15:39.13:640,39,0
11    18316420    rs73430865    T    C    198.88    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.556;QD=13.26;ReadPosRankSum=0.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531848    GT:AD:DP:GQ:PL    0/1:7,8:15:99:229,0,236
11    18316429    rs73430866    G    A    206.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.78;QD=14.75;ReadPosRankSum=1.792;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531848    GT:AD:DP:GQ:PL    0/1:7,7:14:99:237,0,250
11    18317458    rs2305564    T    A    206.78    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.299;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=12.16;ReadPosRankSum=0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531848    GT:AD:DP:GQ:PL    0/1:8,9:17:99:237,0,285
11    18317699    rs2305565    C    T    430.34    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=26;Dels=0.0;FS=2.231;HRun=0;HaplotypeScore=1.7825;MQ=59.11;MQ0=0;MQRankSum=-0.849;QD=16.55;ReadPosRankSum=0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531848    GT:AD:DP:GQ:PL    0/1:12,14:26:99:460,0,377
11    18317864    rs11024606    C    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349215    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    18318287    rs11024607    G    A    2189.29    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=152;Dels=0.0;FS=0.698;HRun=1;HaplotypeScore=2.7328;MQ=59.88;MQ0=0;MQRankSum=1.219;QD=14.4;ReadPosRankSum=-0.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349215    GT:AD:DP:GQ:PL    0/1:75,76:152:99:2219,0,2350
11    18318550    .    C    CA    110.71    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DP=27;FS=3.274;HRun=13;HaplotypeScore=150.1341;IndelType=I;MQ=57.16;MQ0=0;MQRankSum=-1.973;QD=4.1;ReadPosRankSum=-0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349215    GT:AD:DP:GQ:PL    0/1:19,7:27:99:150,0,120
11    18319180    rs7128017    G    T    923.44    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.364;DB;DP=52;Dels=0.0;FS=8.228;HRun=2;HaplotypeScore=1.5449;MQ=59.56;MQ0=0;MQRankSum=0.756;QD=17.76;ReadPosRankSum=0.947;SNPEFF_AMINO_ACID_CHANGE=L303M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18319106_18319264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396253    GT:AD:DP:GQ:PL    0/1:22,30:52:99:953,0,668
11    18319279    rs7128146    G    T    459.52    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.43;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.345;QD=11.49;ReadPosRankSum=0.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349215    GT:AD:DP:GQ:PL    0/1:23,17:40:99:490,0,712
11    18320152    rs11024609    G    T    168.32    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=12.95;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349215    GT:AD:DP:GQ:PL    0/1:7,6:13:99:198,0,245
11    18327648    rs7122032    T    G    504.75    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=30;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=16.83;ReadPosRankSum=-0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349215    GT:AD:DP:GQ:PL    0/1:14,16:30:99:535,0,419
11    18327684    rs1140047    G    T    1598.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.578;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=L160;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18327682_18327894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396253    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1632,120,0
11    18330385    rs80215300    G    GA    176.24    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;FS=0.0;HRun=8;HaplotypeScore=28.3635;IndelType=I;MQ=58.46;MQ0=0;MQRankSum=-0.747;QD=22.03;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399287    GT:AD:DP:GQ:PL    0/1:1,7:8:3.40:214,0,3
11    18333247    rs11024619    G    A    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349215    GT:AD:DP:GQ:PL    0/1:2,2:4:53.81:67,0,54
11    18354877    rs4150561    T    C    626.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534213    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:659,51,0
11    18357180    rs4150579    A    G    211.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526461    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
11    18357270    rs4150581    A    G    434.11    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.095;DB;DP=39;Dels=0.0;FS=13.341;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.876;QD=11.13;ReadPosRankSum=-0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526461    GT:AD:DP:GQ:PL    0/1:20,19:39:99:464,0,668
11    18357624    .    TTTTTG    T    272.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DP=9;FS=0.0;HRun=0;HaplotypeScore=49.9592;IndelType=D;MQ=55.96;MQ0=0;MQRankSum=0.572;QD=30.29;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525831    GT:AD:DP:GQ:PL    0/1:3,6:9:99:312,0,108
11    18373722    rs185085140    C    T    245.04    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=17.5;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524753    GT:AD:DP:GQ:PL    0/1:5,9:14:99:275,0,166
11    18379629    rs4150661    C    A    494.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265963    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:527,39,0
11    18379839    rs3740711    T    C    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528427    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
11    18382021    rs2037867    A    G    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526282    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
11    18382354    .    CT    C    41.87    QDFilter2    AB=0.861;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DP=31;FS=0.0;HRun=16;HaplotypeScore=221.4146;IndelType=D;MQ=54.56;MQ0=0;MQRankSum=0.953;QD=1.35;ReadPosRankSum=2.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418116    GT:AD:DP:GQ:PL    0/1:26,5:31:80.90:81,0,139
11    18418719    rs4274186    C    T    432.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227157    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:466,36,0
11    18420805    rs7121244    T    A    111.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469976    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:144,12,0
11    18424223    rs10832932    G    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478970    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    18424451    rs5030621    C    T    1016.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.1;MQ0=4;QD=26.07;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18424387_18424560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430553    GT:AD:DP:GQ:PL    1/1:0,39:39:84.26:1050,84,0
11    18424487    rs4820    A    G    1088.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.2;MQ0=6;QD=27.92;SNPEFF_AMINO_ACID_CHANGE=L115;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18424387_18424560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430553    GT:AD:DP:GQ:PL    1/1:0,39:39:90.27:1122,90,0
11    18424590    rs3758680    T    A    323.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.07;MQ0=0;QD=26.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478970    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:357,27,0
11    18428637    rs113340412    A    ATTTT    1062.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=12;HaplotypeScore=124.2401;IndelType=I;MQ=46.11;MQ0=0;QD=48.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460405    GT:AD:DP:GQ:PL    1/1:4,13:22:57.19:1105,57,0
11    18434536    rs10766477    T    C    124.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227157    GT:AD:DP:GQ:PL    1/1:1,5:6:12.04:157,12,0
11    18456140    rs2658549    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280704    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    18456181    rs2721126    A    G    393.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280704    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:426,33,0
11    18456235    rs4757664    A    T    868.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280704    GT:AD:DP:GQ:PL    1/1:0,37:37:93.13:902,93,0
11    18460308    rs2643856    C    T    195.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280704    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:228,18,0
11    18467821    rs2658565    T    C    2028.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.63;MQ0=0;QD=32.21;SNPEFF_AMINO_ACID_CHANGE=L245;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18467757_18467880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536880    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2062,154,0
11    18487425    rs2658563    A    G    964.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=37.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSG101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536719    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:998,75,0
11    18505630    rs185939494    C    A    1114.38    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=67;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.7331;MQ=59.66;MQ0=0;MQRankSum=0.026;QD=16.63;ReadPosRankSum=1.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDHAL6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280706    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1144,0,1047
11    18531028    rs2292176    C    A    293.76    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.071;DB;DP=24;Dels=0.0;FS=2.246;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.043;QD=12.24;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSG101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251968    GT:AD:DP:GQ:PL    0/1:13,11:24:99:324,0,396
11    18537800    rs7942548    C    T    79.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.529;QD=6.59;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSG101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251968    GT:AD:DP:GQ:PL    0/1:7,5:12:99:109,0,250
11    18537801    rs7928872    A    G    80.02    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.0;QD=6.67;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSG101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251968    GT:AD:DP:GQ:PL    0/1:7,5:12:99:110,0,252
11    18537815    rs58515919    G    C    41.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=4.65;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSG101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251968    GT:AD:DP:GQ:PL    0/1:6,3:9:71.81:72,0,223
11    18548183    rs1395319    T    G    51.53    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=12.88;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UEVLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543987    GT:AD:DP:GQ:PL    0/1:1,3:4:16.64:81,0,17
11    18548195    rs1395320    C    G    100.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.14;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UEVLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543987    GT:AD:DP:GQ:PL    0/1:1,4:5:21.93:131,0,22
11    18557650    rs56104322    C    G    66.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=4.46;ReadPosRankSum=2.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UEVLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320750    GT:AD:DP:GQ:PL    0/1:10,5:15:96.89:97,0,298
11    18586344    rs3832729    C    CAT    363.51    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=23.7572;IndelType=I;MQ=58.46;MQ0=0;MQRankSum=-0.747;QD=45.44;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UEVLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540917    GT:AD:DP:GQ:PL    0/1:1,7:8:24.89:403,0,25
11    18587719    rs140143691    T    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UEVLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490736    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:75,0,33
11    18591715    rs11445836    T    TA    177.79    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.646;DB;DP=34;FS=1.935;HRun=14;HaplotypeScore=219.3081;IndelType=I;MQ=56.52;MQ0=0;MQRankSum=0.954;QD=5.23;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UEVLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490736    GT:AD:DP:GQ:PL    0/1:22,10:34:99:217,0,158
11    18591992    rs16935557    G    A    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.82;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UEVLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300038    GT:AD:DP:GQ:PL    0/1:4,2:6:64.93:65,0,148
11    18632984    rs10128711    T    C    573.41    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=3.85;DB;DP=34;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.173;QD=16.86;ReadPosRankSum=-0.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTY2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536336    GT:AD:DP:GQ:PL    0/1:15,19:34:99:603,0,480
11    18633897    rs35411689    T    C    1537.59    PASS    AB=0.398;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.671;DB;DP=88;Dels=0.0;FS=7.279;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=17.47;ReadPosRankSum=-0.264;SNPEFF_AMINO_ACID_CHANGE=K617R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18633861_18634035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTY2D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336349    GT:AD:DP:GQ:PL    0/1:35,53:88:99:1568,0,1090
11    18633971    rs11605097    G    A    904.34    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.246;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.541;QD=11.9;ReadPosRankSum=-0.268;SNPEFF_AMINO_ACID_CHANGE=D592;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18633861_18634035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTY2D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336349    GT:AD:DP:GQ:PL    0/1:44,32:76:99:934,0,1305
11    18655573    rs79151962    A    G    163.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=1.945;QD=10.89;ReadPosRankSum=1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTY2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333429    GT:AD:DP:GQ:PL    0/1:9,6:15:99:193,0,293
11    18656062    rs7943121    G    C    73.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTY2D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543776    GT:AD:DP:GQ:PL    1/1:0,3:3:9:106,9,0
11    18730895    rs11024768    A    G    1253.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.05;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280734    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1286,99,0
11    18732119    rs4237727    T    G    554.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:588,45,0
11    18732426    rs4237728    T    G    558.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:592,48,0
11    18732574    rs7109493    T    C    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    18735396    rs10741752    G    T    349.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=54.71;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:382,30,0
11    18735753    rs7106673    G    A    1015.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9739;MQ=59.28;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,30:32:87.20:1048,87,0
11    18735947    rs7125943    T    C    1925.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.19;MQ0=0;MQRankSum=-0.517;QD=33.78;ReadPosRankSum=1.003;SNPEFF_AMINO_ACID_CHANGE=M559V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18735824_18735965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:1,56:57:99:1958,119,0
11    18736247    rs4265581    G    A    469.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:503,36,0
11    18736877    rs4993024    A    G    695.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:728,60,0
11    18736942    rs3887900    G    A    1473.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2912;MQ=59.01;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,45:47:99:1507,120,0
11    18737095    rs4424652    C    T    1842.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=36.85;SNPEFF_AMINO_ACID_CHANGE=R472Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18736979_18737263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1876,141,0
11    18738281    rs10766494    C    T    1414.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=V414I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18738275_18738547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000513874    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1448,108,0
11    18738603    rs10766495    G    A    772.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412229    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:805,60,0
11    18738718    rs10766496    A    G    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412229    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    18739358    rs4561190    A    G    641.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412229    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:674,51,0
11    18751041    rs1550870    C    T    327.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.49;MQ0=0;QD=23.36;SNPEFF_AMINO_ACID_CHANGE=V127;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18751000_18751113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396166    GT:AD:DP:GQ:PL    1/1:1,13:14:30.07:360,30,0
11    18763698    rs4757706    A    G    674.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358540    GT:AD:DP:GQ:PL    1/1:0,22:22:57.15:707,57,0
11    18770810    .    T    C    66.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.612;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=7.4;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358540    GT:AD:DP:GQ:PL    0/1:6,3:9:96.57:97,0,182
11    18770822    rs921082    T    C    451.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.05;MQ0=0;QD=37.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358540    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:484,36,0
11    18771041    rs2028897    G    C    747.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.28;MQ0=0;QD=23.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358540    GT:AD:DP:GQ:PL    1/1:0,32:32:69.12:781,69,0
11    18793360    rs4075664    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358540    GT:AD:DP:GQ:PL    0/1:2,2:4:67.52:72,0,68
11    18793399    rs4075663    G    A    182.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=18.25;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358540    GT:AD:DP:GQ:PL    0/1:4,6:10:99:212,0,116
11    18954561    rs3923247    G    A    296.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=18.52;ReadPosRankSum=-0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302797    GT:AD:DP:GQ:PL    0/1:6,10:16:99:326,0,198
11    18954699    rs4756975    T    G    427.78    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.164;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=14.75;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302797    GT:AD:DP:GQ:PL    0/1:14,15:29:99:458,0,470
11    18954808    rs4756976    A    T    296.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302797    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:330,24,0
11    18956194    rs2014931    T    C    1435.16    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.475;DB;DP=109;Dels=0.0;FS=8.045;HRun=1;HaplotypeScore=1.4972;MQ=59.45;MQ0=0;MQRankSum=-0.783;QD=13.17;ReadPosRankSum=-1.924;SNPEFF_AMINO_ACID_CHANGE=A46;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_18955360_18956556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302797    GT:AD:DP:GQ:PL    0/1:58,51:109:99:1465,0,1896
11    18956530    rs3858489    C    T    219.19    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.21;MQ0=0;MQRankSum=-0.747;QD=27.4;ReadPosRankSum=-0.747;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526914    GT:AD:DP:GQ:PL    0/1:1,7:8:18.16:249,0,18
11    19077755    rs11024969    A    C    1359.45    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.214;DB;DP=102;Dels=0.0;FS=0.902;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.559;QD=13.33;ReadPosRankSum=-0.242;SNPEFF_AMINO_ACID_CHANGE=S65;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19076002_19077974;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329773    GT:AD:DP:GQ:PL    0/1:55,47:102:99:1389,0,1760
11    19077765    rs10833049    T    C    3903.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.6;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=N62S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19076002_19077974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329773    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3903,304,0
11    19077904    rs11024970    T    G    3930.11    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.439;DB;DP=250;DS;Dels=0.0;FS=2.171;HRun=0;HaplotypeScore=5.5456;MQ=59.45;MQ0=0;MQRankSum=-0.378;QD=15.72;ReadPosRankSum=0.063;SNPEFF_AMINO_ACID_CHANGE=N16H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19076002_19077974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329773    GT:AD:DP:GQ:PL    0/1:116,134:250:99:3930,0,3551
11    19078022    rs10833050    T    C    3441.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=59.3;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329773    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3441,268,0
11    19078053    rs10766524    G    A    2006.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329773    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2039,168,0
11    19167850    rs2271001    A    G    3458.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.127;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=1.484;QD=31.44;ReadPosRankSum=0.288;SNPEFF_AMINO_ACID_CHANGE=K99R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19167728_19167850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446113    GT:AD:DP:GQ:PL    1/1:2,108:110:99:3458,235,0
11    19171021    rs3802796    C    T    251.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532026    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
11    19184916    rs12798330    A    G    1455.69    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=122;Dels=0.0;FS=9.035;HRun=0;HaplotypeScore=1.8136;MQ=59.85;MQ0=0;MQRankSum=-1.778;QD=11.93;ReadPosRankSum=-0.091;SNPEFF_AMINO_ACID_CHANGE=Y262C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19184850_19184974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399351    GT:AD:DP:GQ:PL    0/1:72,49:122:99:1486,0,2241
11    19186472    rs2303438    G    A    382.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.89;QD=21.24;ReadPosRankSum=-0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399351    GT:AD:DP:GQ:PL    0/1:6,12:18:99:412,0,180
11    19186826    rs2042687    A    T    145.09    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399351    GT:AD:DP:GQ:PL    0/1:3,5:8:99:175,0,102
11    19194141    rs7111850    T    C    160.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399351    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
11    19197349    .    CT    C    979.95    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=3.446;DP=94;FS=2.363;HRun=11;HaplotypeScore=322.2098;IndelType=D;MQ=59.19;MQ0=0;MQRankSum=0.981;QD=10.42;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399351    GT:AD:DP:GQ:PL    0/1:40,51:94:99:1019,0,693
11    19197626    rs147555558    TA    T    347.27    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.665;DB;DP=21;FS=0.0;HRun=3;HaplotypeScore=51.5417;IndelType=D;MQ=61.02;MQ0=0;MQRankSum=-0.116;QD=16.54;ReadPosRankSum=-0.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525490    GT:AD:DP:GQ:PL    0/1:9,12:21:99:386,0,274
11    19204403    rs45549043    A    G    64.55    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=53.95;MQ0=0;MQRankSum=0.278;QD=5.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265968    GT:AD:DP:GQ:PL    0/1:7,5:12:94.54:95,0,244
11    19206426    rs2288251    A    T    302.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265968    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:335,24,0
11    19246590    rs793276    C    T    574.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529188    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:608,45,0
11    19246651    rs793275    T    G    1555.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.58;MQ0=0;MQRankSum=1.102;QD=28.29;ReadPosRankSum=-0.787;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529188    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1589,138,0
11    19247429    rs117623539    A    G    1479.07    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=0.845;DB;DP=128;Dels=0.0;FS=0.793;HRun=3;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=11.56;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250024    GT:AD:DP:GQ:PL    0/1:69,59:128:99:1509,0,2214
11    19247590    rs793273    C    T    183.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250024    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:216,18,0
11    19247612    rs793272    G    A    126.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250024    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
11    19252427    rs793252    G    T    172.92    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=9.61;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250024    GT:AD:DP:GQ:PL    0/1:10,8:18:99:203,0,351
11    19256250    rs793269    C    T    1311.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532666    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1345,99,0
11    19901632    rs11025310    G    A    190    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=2.246;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.529;QD=11.88;ReadPosRankSum=-1.27;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19901415_19901673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527559    GT:AD:DP:GQ:PL    0/1:9,7:16:99:220,0,218
11    19955500    rs1372989    A    G    2073.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=K506;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19954722_19955823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2107,163,0
11    19970501    rs11025335    T    C    2110.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.57;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=H776;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19970237_19970626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2144,168,0
11    19970558    rs2585773    T    C    1838.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.44;SNPEFF_AMINO_ACID_CHANGE=D795;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19970237_19970626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1871,150,0
11    19970579    rs2707084    C    T    2324.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=D802;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_19970237_19970626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2358,175,0
11    20005452    rs2568118    T    G    41.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=4.67;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349880    GT:AD:DP:GQ:PL    0/1:6,3:9:71.98:72,0,225
11    20005484    rs2568117    G    T    240.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349880    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:273,21,0
11    20005892    rs4757875    G    T    119.89    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.98;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349880    GT:AD:DP:GQ:PL    0/1:1,4:5:24.27:150,0,24
11    20057371    rs6483634    T    G    160.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:193,15,0
11    20065779    rs3802800    C    G    877.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.55;MQ0=0;QD=30.27;SNPEFF_AMINO_ACID_CHANGE=P1006A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20065527_20065818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527559    GT:AD:DP:GQ:PL    1/1:0,29:29:72.19:911,72,0
11    20065938    rs7121153    C    T    89.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
11    20066355    rs10219212    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    20072779    rs6483635    C    T    584.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:618,45,0
11    20099112    rs4757028    A    T    1633.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=A1602;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20099098_20099181;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1667,120,0
11    20099399    rs6483641    G    T    123.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
11    20099449    rs12146551    C    T    139.97    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=12.72;ReadPosRankSum=1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:6,5:11:99:170,0,214
11    20099541    rs6483642    C    T    677.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_AMINO_ACID_CHANGE=D1626;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20099539_20099650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:711,54,0
11    20099767    rs7121301    A    C    209.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
11    20099776    rs7121304    A    G    133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
11    20101425    rs76889828    C    T    87.92    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:120,12,0
11    20101426    rs5001560    A    G    86.94    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:119,12,0
11    20101429    rs5001559    G    C    89.83    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:122,12,0
11    20101508    rs4237748    A    G    244.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:278,24,0
11    20101524    rs4757888    G    A    102.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=10.23;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,213
11    20101704    rs1867114    C    T    930.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=29.08;SNPEFF_AMINO_ACID_CHANGE=S1694;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20101610_20101755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    1/1:0,32:32:72.22:963,72,0
11    20101744    rs1867115    C    A    920.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=R1708;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20101610_20101755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    1/1:0,26:26:72.20:953,72,0
11    20101769    rs3758695    C    T    255.26    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.332;DB;DP=16;Dels=0.0;FS=6.317;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.03;QD=15.95;ReadPosRankSum=1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525322    GT:AD:DP:GQ:PL    0/1:6,10:16:99:285,0,171
11    20104669    rs2028570    G    A    797.13    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.765;DB;DP=62;Dels=0.0;FS=9.009;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.035;QD=12.86;ReadPosRankSum=0.615;SNPEFF_AMINO_ACID_CHANGE=P1750;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20104553_20104725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    0/1:34,28:62:99:827,0,991
11    20112373    rs2289560    A    G    190    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.07;DB;DP=16;Dels=0.0;FS=2.596;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=11.88;ReadPosRankSum=-1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:7,9:16:99:220,0,218
11    20112417    rs2243624    A    C    378.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=21;Dels=0.0;FS=7.225;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=18.02;ReadPosRankSum=2.025;SNPEFF_AMINO_ACID_CHANGE=S1771;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20112411_20112564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    0/1:9,12:21:99:408,0,265
11    20112492    rs1837971    G    A    434.37    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=27;Dels=0.0;FS=8.916;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=16.09;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=T1796;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20112411_20112564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360655    GT:AD:DP:GQ:PL    0/1:14,13:27:99:464,0,384
11    20112649    rs2255322    G    A    310.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:343,27,0
11    20112687    rs1442718    T    C    161.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:194,15,0
11    20113591    rs2255447    C    A    111.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:144,12,0
11    20117232    rs2289566    T    C    1681.27    PASS    AB=0.402;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.1452;MQ=59.5;MQ0=0;MQRankSum=0.39;QD=18.27;ReadPosRankSum=0.868;SNPEFF_AMINO_ACID_CHANGE=H1041;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20117218_20117313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:37,55:92:99:1711,0,1184
11    20119373    rs10833241    C    T    274.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.669;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.4;MQ0=0;MQRankSum=-0.739;QD=12.47;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:11,11:22:99:304,0,379
11    20122392    rs2245314    C    A    530.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,14:15:42.14:563,42,0
11    20124914    rs2243411    A    C    2244.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=35.62;SNPEFF_AMINO_ACID_CHANGE=G1241;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20124801_20124955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2277,175,0
11    20127046    rs11025385    C    A    452.51    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.813;DB;DP=34;Dels=0.0;FS=8.183;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.293;QD=13.31;ReadPosRankSum=-1.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:18,16:34:99:483,0,592
11    20128907    rs7928665    T    C    168.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
11    20129040    .    T    C    773.04    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.27;MQ0=0;MQRankSum=-0.361;QD=13.56;ReadPosRankSum=-1.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:29,28:57:99:803,0,1016
11    20129075    rs4757890    G    A    1606    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=7.618;DB;DP=106;Dels=0.0;FS=1.301;HRun=0;HaplotypeScore=1.5773;MQ=59.61;MQ0=0;MQRankSum=-0.281;QD=15.15;ReadPosRankSum=0.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:54,52:106:99:1636,0,1480
11    20129376    rs74459757    C    T    875.88    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.007;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9995;MQ=59.64;MQ0=0;MQRankSum=0.76;QD=13.69;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311043    GT:AD:DP:GQ:PL    0/1:34,30:64:99:906,0,1089
11    20139632    rs2245836    G    C    706.80    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.969;DB;DP=47;Dels=0.0;FS=2.789;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.139;QD=15.04;ReadPosRankSum=0.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525025    GT:AD:DP:GQ:PL    0/1:24,23:47:99:737,0,682
11    20139937    rs3802803    C    T    330.38    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=-1.022;QD=14.36;ReadPosRankSum=0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525025    GT:AD:DP:GQ:PL    0/1:11,12:23:99:360,0,344
11    20178551    rs71911674    CG    C    95.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=14;FS=9.89;HRun=8;HaplotypeScore=44.2603;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=0.66;QD=6.84;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227256    GT:AD:DP:GQ:PL    0/1:7,7:14:99:135,0,189
11    20178717    rs831464    G    T    128.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=8.55;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=R180;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20178583_20178785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227256    GT:AD:DP:GQ:PL    0/1:9,6:15:99:158,0,310
11    20388866    rs180783675    A    C    643.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.268;DB;DP=40;Dels=0.0;FS=7.678;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.899;QD=16.08;ReadPosRankSum=-0.443;SNPEFF_AMINO_ACID_CHANGE=P114;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20388720_20389171;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTATIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530266    GT:AD:DP:GQ:PL    0/1:16,24:40:99:673,0,520
11    20397918    rs10741833    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTATIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419348    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    20398034    rs10741834    T    C    1183.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTATIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419348    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1217,90,0
11    20403825    rs7926967    A    T    702.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTATIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419348    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:735,54,0
11    20403904    rs10766664    G    C    215.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTATIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419348    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
11    20404506    rs2403587    T    C    264.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTATIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419348    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:298,27,0
11    20404613    rs3824886    T    G    545.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.12;MQ0=0;QD=30.28;SNPEFF_AMINO_ACID_CHANGE=S151R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20404526_20405162;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTATIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531058    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:578,45,0
11    20404757    rs3781679    T    C    291.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTATIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533914    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
11    20411199    rs10542415    TAAAA    T    587.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=15;HaplotypeScore=128.6546;IndelType=D;MQ=46.42;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:4,15:21:48.02:629,48,0
11    20411418    rs7937501    G    C    958.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,27:28:81.22:991,81,0
11    20411424    rs7937204    A    G    792.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:825,60,0
11    20411503    rs2403591    G    A    72.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
11    20413563    rs7932200    T    C    165.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
11    20418956    rs6483670    T    C    135.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
11    20419028    rs7934372    T    C    154.95    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=9.68;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    0/1:10,6:16:99:185,0,351
11    20424326    rs10833319    A    G    580.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:613,48,0
11    20429454    rs10741836    T    C    1742.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1776,132,0
11    20473655    rs1001669    T    G    1459.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1493,120,0
11    20515555    rs6483697    G    A    2725.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.69;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2759,205,0
11    20529727    rs6483699    C    T    225.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331079    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:258,21,0
11    20529886    rs6483700    G    A    2319.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9085;MQ=59.69;MQ0=0;QD=31.34;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000541255    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2352,169,0
11    20621186    rs76857783    C    T    386.97    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=24;Dels=0.0;FS=1.685;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=-0.596;QD=16.12;ReadPosRankSum=1.789;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_20621140_20621221;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298923    GT:AD:DP:GQ:PL    0/1:9,15:24:99:417,0,299
11    20622975    rs1443547    G    A    98.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.638;QD=12.3;ReadPosRankSum=1.368;SNPEFF_AMINO_ACID_CHANGE=G102S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20622675_20623211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    0/1:4,4:8:99:128,0,99
11    20623007    rs7109418    C    T    96.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.07;ReadPosRankSum=2.017;SNPEFF_AMINO_ACID_CHANGE=S112;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20622675_20623211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,144
11    20623023    rs2241941    C    T    163.76    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=18.2;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L118;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20622675_20623211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    0/1:2,7:9:59.23:194,0,59
11    20623042    rs1443548    T    C    364.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_AMINO_ACID_CHANGE=F124S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20622675_20623211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:398,30,0
11    20623156    rs1443549    C    G    562.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=57.53;MQ0=0;QD=29.6;SNPEFF_AMINO_ACID_CHANGE=A162G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20622675_20623211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:595,48,0
11    20626106    rs894750    C    G    70.69    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=10.1;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    0/1:3,4:7:90.25:101,0,90
11    20628479    rs2278649    T    C    529.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:563,45,0
11    20639400    rs7925597    A    G    2465.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=S410;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20639298_20639430;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2499,187,0
11    20639479    rs11827415    G    A    1109.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=38.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,29:29:84.28:1143,84,0
11    20648179    rs76260245    C    T    469.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:503,39,0
11    20648418    rs4923548    C    T    1058.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1092,81,0
11    20648556    rs3740872    C    A    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
11    20649644    rs80286799    T    C    796.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:829,63,0
11    20673867    rs2276433    G    A    1387.26    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.367;DB;DP=80;Dels=0.0;FS=1.897;HRun=1;HaplotypeScore=1.6567;MQ=59.71;MQ0=0;MQRankSum=0.035;QD=17.34;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=E701;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20673835_20674002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525748    GT:AD:DP:GQ:PL    0/1:35,45:80:99:1417,0,1079
11    20699394    rs1793003    C    G    1142.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,37:37:90.28:1176,90,0
11    20805072    rs7105131    A    G    171.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
11    20805118    rs2280362    C    T    236.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
11    20805286    rs8176785    G    A    2469    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=R110Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_20805226_20805376;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2502,181,0
11    20949115    rs2293241    C    T    136.21    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:166,0,22
11    20949763    rs4363596    C    T    113.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.17;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,142
11    20959185    rs1880088    A    T    165.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
11    20959429    rs1880087    T    C    384.79    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.944;DB;DP=33;Dels=0.0;FS=3.526;HRun=3;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.604;QD=11.66;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    0/1:17,16:33:99:415,0,501
11    20959482    rs1880086    G    C    183.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=14.13;ReadPosRankSum=2.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    0/1:7,6:13:99:214,0,214
11    20959533    rs1880085    G    A    32.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=5.48;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    0/1:3,3:6:62.84:63,0,105
11    20981894    rs2280584    T    C    257.29    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=17.15;ReadPosRankSum=1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    0/1:7,8:15:99:287,0,238
11    21305564    rs716577    G    C    345.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:379,27,0
11    21305927    rs4151053    T    C    1613.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1646,129,0
11    21306113    rs4151054    A    C    846.18    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.658;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.56;MQ0=0;MQRankSum=0.292;QD=15.97;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    0/1:20,33:53:99:876,0,610
11    21581665    rs7119475    C    T    1339.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1373,105,0
11    21581805    rs8176789    C    T    2049.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DB;DP=63;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.8007;MQ=59.7;MQ0=0;MQRankSum=1.397;QD=32.54;ReadPosRankSum=0.503;SNPEFF_AMINO_ACID_CHANGE=G562;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_21581735_21581928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325319    GT:AD:DP:GQ:PL    1/1:1,62:63:99:2083,147,0
11    21581997    rs8176790    C    T    164.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
11    21592228    rs4922847    C    A    616.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298925    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:650,51,0
11    22233029    rs4922980    G    A    282.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-2.589;QD=23.55;ReadPosRankSum=-1.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324559    GT:AD:DP:GQ:PL    0/1:3,9:12:90.52:313,0,91
11    22233066    rs4922981    T    C    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324559    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:63,0,67
11    22242729    rs4312063    T    C    347.13    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.377;DB;DP=20;Dels=0.0;FS=2.645;HRun=0;HaplotypeScore=0.9734;MQ=57.88;MQ0=0;MQRankSum=1.359;QD=17.36;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=D89;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_22242643_22242756;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324559    GT:AD:DP:GQ:PL    0/1:6,14:20:99:377,0,195
11    22271870    rs7481951    A    T    908.92    PASS    AB=0.327;AC=1;AF=0.50;AN=2;BaseQRankSum=0.098;DB;DP=49;Dels=0.0;FS=6.939;HRun=2;HaplotypeScore=1.5983;MQ=59.15;MQ0=0;MQRankSum=-0.886;QD=18.55;ReadPosRankSum=-0.842;SNPEFF_AMINO_ACID_CHANGE=L322F;SNPEFF_CODON_CHANGE=ttA/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_22271783_22271917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324559    GT:AD:DP:GQ:PL    0/1:16,33:49:99:939,0,498
11    22297606    rs141950015    AT    A    489.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=88.8877;IndelType=D;MQ=58.98;MQ0=0;QD=20.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324559    GT:AD:DP:GQ:PL    1/1:1,23:24:68.73:532,69,0
11    22297770    rs11026488    G    C    686.43    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.153;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.813;QD=19.61;ReadPosRankSum=-0.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324559    GT:AD:DP:GQ:PL    0/1:10,25:35:99:716,0,299
11    22364758    rs2278751    C    T    3349.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.445;MQ=59.78;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263160    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3350,253,0
11    22391534    rs2665677    G    A    665.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263160    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:698,54,0
11    22397739    rs2248436    A    C    674.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263160    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:707,54,0
11    22398830    rs1374718    A    G    219.51    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=27.44;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263160    GT:AD:DP:GQ:PL    0/1:1,7:8:17.16:249,0,17
11    22646025    rs4447177    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103801.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    22647366    rs3740615    G    A    241.85    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.705;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=58.24;MQ0=0;MQRankSum=-0.837;QD=10.08;ReadPosRankSum=-0.961;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528582    GT:AD:DP:GQ:PL    0/1:13,11:24:99:272,0,378
11    22696451    rs922571    A    G    1570.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_AMINO_ACID_CHANGE=G12;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_22696396_22696560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278187    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1604,120,0
11    22747745    rs337448    A    C    609.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278187    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:642,48,0
11    24750842    rs7128434    G    A    835.01    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=61;Dels=0.0;FS=3.824;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.237;QD=13.69;ReadPosRankSum=1.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    0/1:31,30:61:99:865,0,979
11    24751014    rs2716462    T    A    73.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.49;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,147
11    24759855    rs1564992    G    A    519.74    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=12.09;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    0/1:22,21:43:99:550,0,685
11    24784862    rs2716532    A    T    970.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1003,75,0
11    24784922    rs10500990    G    T    320.59    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9996;MQ=56.11;MQ0=0;MQRankSum=-0.182;QD=20.04;ReadPosRankSum=-1.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    0/1:4,12:16:99:351,0,126
11    24853312    rs17307194    A    T    167.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.33;MQ0=0;MQRankSum=-0.323;QD=11.94;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    0/1:8,6:14:99:197,0,286
11    24853325    rs2631491    T    G    167.02    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.787;MQ=58.45;MQ0=0;MQRankSum=0.752;QD=11.13;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    0/1:8,7:15:99:197,0,266
11    24998018    rs140531879    CTGTT    C    864.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=116.5323;IndelType=D;MQ=48.39;MQ0=0;QD=50.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    1/1:1,14:17:51.13:907,51,0
11    25004504    rs10767293    G    A    259.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:293,21,0
11    25071432    rs4567409    A    G    160.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:193,15,0
11    25098938    rs7930185    G    C    1430.92    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=122;Dels=0.0;FS=8.976;HRun=2;HaplotypeScore=1.893;MQ=59.62;MQ0=0;MQRankSum=1.056;QD=11.73;ReadPosRankSum=-1.492;SNPEFF_AMINO_ACID_CHANGE=E222Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_25098875_25098952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533227    GT:AD:DP:GQ:PL    0/1:63,59:122:99:1461,0,2038
11    25100229    rs10500994    G    A    1151.51    PASS    AB=0.365;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=52;Dels=0.0;FS=4.801;HRun=0;HaplotypeScore=0.9789;MQ=59.56;MQ0=0;MQRankSum=1.159;QD=22.14;ReadPosRankSum=1.007;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LUZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336930    GT:AD:DP:GQ:PL    0/1:19,33:52:99:1182,0,488
11    26465500    rs4032918    G    A    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,109
11    26547348    rs430563    G    A    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    26547353    rs410617    T    G    95.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:128,9,0
11    26552679    rs9988806    T    A    1079.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.74;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:0,31:31:87.24:1113,87,0
11    26552696    rs2131696    T    A    1275.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=55.08;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1309,102,0
11    26552702    rs293937    T    C    1398.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.08;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1432,111,0
11    26558841    rs386635    G    A    68.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.55;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:5,3:8:98.39:98,0,186
11    26563464    rs410036    A    T    508.23    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=31;Dels=0.0;FS=3.846;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.298;QD=16.39;ReadPosRankSum=1.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:14,17:31:99:538,0,426
11    26563652    rs420143    T    G    338.22    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.623;QD=18.79;ReadPosRankSum=0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:5,13:18:99:368,0,120
11    26568966    rs2663168    A    G    1712.16    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=3.254;DB;DP=113;Dels=0.0;FS=9.446;HRun=0;HaplotypeScore=2.3437;MQ=59.59;MQ0=0;MQRankSum=0.109;QD=15.15;ReadPosRankSum=0.67;SNPEFF_AMINO_ACID_CHANGE=L240;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26568963_26569097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531568    GT:AD:DP:GQ:PL    0/1:56,57:113:99:1742,0,1521
11    26569240    rs67125456    G    T    170.97    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=16;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=10.69;ReadPosRankSum=-1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:9,7:16:99:201,0,328
11    26574591    rs395397    T    A    36.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=48.31;MQ0=0;MQRankSum=0.406;QD=6.03;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:3,3:6:66.19:66,0,92
11    26574630    rs380170    A    G    516.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:550,42,0
11    26574740    rs395770    T    C    1097.27    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.942;DB;DP=87;Dels=0.0;FS=7.189;HRun=1;HaplotypeScore=5.2641;MQ=49.13;MQ0=0;MQRankSum=4.954;QD=12.61;ReadPosRankSum=0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:49,38:87:99:1127,0,1475
11    26574766    .    G    GT    246.15    QDFilter2    AB=0.92;AC=1;AF=0.50;AN=2;BaseQRankSum=9.335;DP=173;FS=7.777;HRun=4;HaplotypeScore=2368.5549;IndelType=I;MQ=46.94;MQ0=0;MQRankSum=-8.242;QD=1.42;ReadPosRankSum=0.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:158,10:173:99:285,0,2370
11    26574770    .    TG    T    1436.65    PASS    AB=0.941;AC=1;AF=0.50;AN=2;BaseQRankSum=8.611;DP=175;FS=4.517;HRun=1;HaplotypeScore=2197.0031;IndelType=D;MQ=47.44;MQ0=0;MQRankSum=-8.375;QD=8.21;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:164,11:175:99:1476,0,3120
11    26574777    rs56197314    G    T    559.63    HaplotypeScoreFilter13    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=0.516;DB;DP=186;Dels=0.01;FS=5.238;HRun=5;HaplotypeScore=96.7065;MQ=47.88;MQ0=0;MQRankSum=-8.874;QD=2.99;ReadPosRankSum=-1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:94,92:186:99:590,0,3015
11    26574782    rs59938249    TG    T    5977.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.91;DB;DP=192;FS=0.0;HRun=1;HaplotypeScore=1933.6969;IndelType=D;MQ=48.68;MQ0=0;MQRankSum=-0.032;QD=31.14;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:110,82:192:99:5978,542,0
11    26581382    rs71047866    TACACACAC    T    612.41    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.086;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=343.7417;IndelType=D;MQ=49.12;MQ0=0;MQRankSum=-1.97;QD=17.5;ReadPosRankSum=-0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527569    GT:AD:DP:GQ:PL    0/1:16,10:35:99:651,0,231
11    26584625    rs444178    C    A    567.10    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.921;DB;DP=51;Dels=0.0;FS=1.455;HRun=4;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=2.224;QD=11.12;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:28,23:51:99:597,0,908
11    26586801    rs15783    G    A    786.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=63;Dels=0.0;FS=3.586;HRun=0;HaplotypeScore=1.7621;MQ=59.7;MQ0=0;MQRankSum=-1.918;QD=12.48;ReadPosRankSum=0.89;SNPEFF_AMINO_ACID_CHANGE=T202I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26586712_26587443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455601    GT:AD:DP:GQ:PL    0/1:35,28:63:99:816,0,1010
11    26587133    rs293980    T    C    849.18    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.569;QD=13.7;ReadPosRankSum=1.855;SNPEFF_AMINO_ACID_CHANGE=S118;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26586712_26587443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281268    GT:AD:DP:GQ:PL    0/1:32,30:62:99:879,0,946
11    26619872    rs7112022    T    C    520.73    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.879;DB;DP=27;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=2.025;QD=19.29;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:12,15:27:99:551,0,417
11    26620101    rs10835009    T    C    137.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.276;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.827;QD=5.72;ReadPosRankSum=0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:16,8:24:99:167,0,590
11    26645894    rs1012552    A    T    361.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:395,30,0
11    26656563    rs7946841    C    T    341.67    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.218;DB;DP=31;Dels=0.0;FS=1.723;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=11.02;ReadPosRankSum=-1.25;SNPEFF_AMINO_ACID_CHANGE=F517;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26656560_26656617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531568    GT:AD:DP:GQ:PL    0/1:17,14:31:99:372,0,566
11    26656714    rs10835033    C    G    96.15    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.74;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:7,4:11:99:126,0,251
11    26663284    rs10835039    T    C    154.35    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.825;QD=14.03;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:5,6:11:99:184,0,171
11    26663394    rs10835040    A    G    350.52    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.651;DB;DP=54;Dels=0.0;FS=5.22;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.464;QD=6.49;ReadPosRankSum=1.923;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:38,16:54:99:381,0,1213
11    26663595    .    C    CA    680.37    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.819;DP=41;FS=33.606;HRun=1;HaplotypeScore=100.3469;IndelType=I;MQ=61.05;MQ0=0;MQRankSum=0.464;QD=16.59;ReadPosRankSum=-1.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:22,19:41:99:719,0,652
11    26669095    rs10734380    G    A    107.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=10.72;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:5,5:10:99:137,0,139
11    26677796    rs72881793    A    T    544.96    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.187;DB;DP=33;Dels=0.0;FS=5.992;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.886;QD=16.51;ReadPosRankSum=-2.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    0/1:15,18:33:99:575,0,389
11    26677867    rs10835050    T    C    1043.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256737    GT:AD:DP:GQ:PL    1/1:0,32:33:87.25:1076,87,0
11    26677947    rs10835051    C    T    1906.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=P748;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26677923_26678028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531568    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1940,150,0
11    26692638    rs72883245    C    T    953.67    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DB;DP=69;Dels=0.0;FS=1.014;HRun=0;HaplotypeScore=2.4282;MQ=59.33;MQ0=0;MQRankSum=0.75;QD=13.82;ReadPosRankSum=-0.222;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    0/1:35,34:69:99:984,0,1092
11    26692902    rs72883247    T    C    41.28    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=3.18;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    0/1:9,4:13:71.28:71,0,324
11    26692967    rs7101498    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    26694670    rs4576775    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    26694812    rs4278475    C    T    1210.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.63;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1244,99,0
11    26694842    rs4551716    C    T    876.93    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.31;DB;DP=62;Dels=0.0;FS=1.716;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.628;QD=14.14;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    0/1:33,29:62:99:907,0,1041
11    26694979    rs4369354    A    G    1625.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=106;Dels=0.0;FS=0.785;HRun=0;HaplotypeScore=2.3982;MQ=59.56;MQ0=0;MQRankSum=-0.019;QD=15.34;ReadPosRankSum=0.499;SNPEFF_AMINO_ACID_CHANGE=C559;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26694949_26695076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    0/1:53,53:106:99:1656,0,1511
11    26702664    rs10734383    C    T    1080.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=L471;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26702602_26702768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1113,84,0
11    26705124    rs3924552    C    G    93.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
11    26705310    rs3924551    A    G    211.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=18;Dels=0.0;FS=5.614;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=11.76;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=N434;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26705304_26705390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    0/1:10,8:18:99:242,0,331
11    26707847    rs146782246    G    GTTC    606.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=33.6562;IndelType=I;MQ=57.75;MQ0=0;QD=55.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396005    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:649,33,0
11    26718434    rs4390305    C    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533617    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
11    26718732    rs72883299    C    A    243.15    FSFilter60;QDFilter2    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.963;DB;DP=136;Dels=0.0;FS=290.537;HRun=2;HaplotypeScore=1.4105;MQ=52.11;MQ0=0;MQRankSum=-2.036;QD=1.79;ReadPosRankSum=-0.574;SNPEFF_AMINO_ACID_CHANGE=C340F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26718711_26718799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280467    GT:AD:DP:GQ:PL    0/1:75,61:136:99:273,0,2383
11    26719835    rs12294769    G    T    142.32    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=8.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280467    GT:AD:DP:GQ:PL    0/1:9,7:16:99:172,0,313
11    26724995    rs7940964    C    A    76.12    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.219;DB;DP=19;Dels=0.05;FS=0.0;HRun=0;HaplotypeScore=4.0431;MQ=57.66;MQ0=0;MQRankSum=-0.219;QD=3.81;ReadPosRankSum=0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280467    GT:AD:DP:GQ:PL    0/1:13,6:19:99:106,0,425
11    26732923    rs4322349    A    G    132.30    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.437;QD=10.18;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280467    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,296
11    26734209    rs10742156    C    T    7709.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=225;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=8.7289;MQ=59.57;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=T128;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_26734188_26734253;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280467    GT:AD:DP:GQ:PL    1/1:0,224:225:99:7710,557,0
11    27076977    rs2305095    C    T    273.08    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.21;DB;DP=31;Dels=0.0;FS=9.375;HRun=0;HaplotypeScore=3.6428;MQ=57.88;MQ0=0;MQRankSum=-0.55;QD=8.81;ReadPosRankSum=0.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527505    GT:AD:DP:GQ:PL    0/1:20,11:31:99:303,0,624
11    27077118    rs10767598    C    T    1234.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=38.58;SNPEFF_AMINO_ACID_CHANGE=S47;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_27076940_27077196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBOX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263182    GT:AD:DP:GQ:PL    1/1:0,32:32:93.31:1268,93,0
11    27078608    rs6484262    A    T    157.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=35.13;MQ0=0;QD=26.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533566    GT:AD:DP:GQ:PL    1/1:0,6:6:18.02:190,18,0
11    27078643    .    C    CATA    902.73    PASS    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.809;DP=44;FS=0.0;HRun=0;HaplotypeScore=344.6248;IndelType=I;MQ=41.46;MQ0=0;MQRankSum=-3.505;QD=20.52;ReadPosRankSum=1.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533566    GT:AD:DP:GQ:PL    0/1:31,13:44:99:942,0,493
11    27148885    rs117367252    G    A    450.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=35;Dels=0.0;FS=17.675;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.383;QD=12.87;ReadPosRankSum=-2.25;SNPEFF_AMINO_ACID_CHANGE=R350H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_27148840_27149354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBOX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263182    GT:AD:DP:GQ:PL    0/1:20,15:35:99:480,0,599
11    27360180    rs10835167    A    G    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529615    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
11    27362359    rs17244028    T    G    1175.20    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.41;DB;DP=78;Dels=0.0;FS=3.035;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=0.454;QD=15.07;ReadPosRankSum=0.872;SNPEFF_AMINO_ACID_CHANGE=E264A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_27362243_27362384;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328697    GT:AD:DP:GQ:PL    0/1:38,40:78:99:1205,0,1227
11    27379127    rs3741407    C    G    382.59    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.378;QD=8.7;ReadPosRankSum=-0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317945    GT:AD:DP:GQ:PL    0/1:28,16:44:99:413,0,820
11    27390089    rs2447997    T    C    2231.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=K703;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_27387508_27390690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389858    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2265,172,0
11    27393813    rs2448001    G    A    1937.89    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.307;DB;DP=115;Dels=0.0;FS=4.432;HRun=3;HaplotypeScore=2.9152;MQ=59.68;MQ0=0;MQRankSum=-0.441;QD=16.85;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459658    GT:AD:DP:GQ:PL    0/1:51,62:115:99:1968,0,1695
11    27395371    rs2448002    G    A    402.35    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=24;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=16.76;ReadPosRankSum=0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530658    GT:AD:DP:GQ:PL    0/1:11,13:24:99:432,0,347
11    27395377    rs2448003    G    A    372.93    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.889;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=12.03;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530658    GT:AD:DP:GQ:PL    0/1:15,16:31:99:403,0,510
11    27397648    rs2472628    C    T    187.27    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=18.73;ReadPosRankSum=-0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530658    GT:AD:DP:GQ:PL    0/1:3,7:10:97.79:217,0,98
11    27401743    rs2472623    A    T    2429.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527773    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2463,193,0
11    27401927    rs2448005    T    G    616.88    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.409;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.624;QD=14.35;ReadPosRankSum=-1.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480977    GT:AD:DP:GQ:PL    0/1:19,24:43:99:647,0,681
11    27401940    rs2472622    T    A    1098.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480977    GT:AD:DP:GQ:PL    1/1:0,30:30:84.25:1131,84,0
11    27406844    rs6484295    G    A    1093.33    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.961;DB;DP=69;Dels=0.0;FS=0.912;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.811;QD=15.62;ReadPosRankSum=1.435;SNPEFF_AMINO_ACID_CHANGE=S143;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_27406793_27407015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000480977    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1123,0,953
11    27412535    rs12273521    C    T    712.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379214    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:745,57,0
11    27412782    rs35556457    CTTT    C    361.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-3.531;DB;DP=34;FS=0.0;HRun=16;HaplotypeScore=201.0598;IndelType=D;MQ=52.35;MQ0=0;MQRankSum=-0.739;QD=10.64;ReadPosRankSum=-1.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379214    GT:AD:DP:GQ:PL    1/1:9,14:34:24.92:404,25,0
11    27413855    rs1871251    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379214    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    27523164    rs71050915    T    TGAAGTTAAAATTTCAGGC    2554.31    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=40;FS=7.499;HRun=0;HaplotypeScore=484.3957;IndelType=I;MQ=54.85;MQ0=0;MQRankSum=-2.822;QD=63.86;ReadPosRankSum=0.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN7C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278193    GT:AD:DP:GQ:PL    0/1:31,9:40:99:2593,0,1290
11    27679662    rs2353512    T    C    2828.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5265;MQ=59.51;MQ0=0;QD=30.09;SNPEFF_AMINO_ACID_CHANGE=A150;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_27676440_27680132;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDNF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356660    GT:AD:DP:GQ:PL    1/1:0,94:94:99:2862,235,0
11    27679916    rs6265    C    T    1601.23    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.086;DB;DP=121;Dels=0.0;FS=5.746;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.14;QD=13.23;ReadPosRankSum=-0.538;SNPEFF_AMINO_ACID_CHANGE=V148M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_27676440_27680132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDNF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438929    GT:AD:DP:GQ:PL    0/1:62,59:121:99:1631,0,1606
11    27910923    rs6484341    T    A    3819.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9336;MQ=59.34;MQ0=0;QD=35.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-1033A18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440936    GT:AD:DP:GQ:PL    1/1:0,107:108:99:3820,292,0
11    27911646    rs2726836    C    T    2219.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.67;MQ0=0;QD=32.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-1033A18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440936    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2253,166,0
11    27911878    rs1826330    T    C    541.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=36.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-1033A18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440936    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:574,42,0
11    28045419    rs12273233    T    C    383.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.22;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.45;MQ0=0;MQRankSum=-1.312;QD=15.96;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263181    GT:AD:DP:GQ:PL    0/1:9,15:24:99:413,0,284
11    28045430    rs67229134    AT    A    117.90    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.298;DB;DP=16;FS=0.0;HRun=8;HaplotypeScore=71.2181;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=0.405;QD=7.37;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263181    GT:AD:DP:GQ:PL    0/1:9,7:16:99:157,0,245
11    28045518    rs12292666    C    T    100.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=12.5;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263181    GT:AD:DP:GQ:PL    0/1:4,4:8:99:130,0,141
11    28090681    rs11030204    T    G    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.59;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263181    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,110
11    28134974    rs60970073    C    A    425.72    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=56;Dels=0.0;FS=6.798;HRun=3;HaplotypeScore=0.0;MQ=47.82;MQ0=1;MQRankSum=-5.82;QD=7.6;ReadPosRankSum=0.657;SNPEFF_AMINO_ACID_CHANGE=N31K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_28134865_28135151;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303459    GT:AD:DP:GQ:PL    0/1:34,22:56:99:456,0,1142
11    28135355    rs11030216    G    T    35.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303459    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:66,0,30
11    30253318    rs611246    A    T    119.23    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5082;MQ=56.85;MQ0=0;MQRankSum=0.752;QD=7.95;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254122    GT:AD:DP:GQ:PL    0/1:8,7:15:99:149,0,289
11    30253641    rs609896    T    C    508.40    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=33;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=0.9789;MQ=58.59;MQ0=0;MQRankSum=-0.27;QD=15.41;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254122    GT:AD:DP:GQ:PL    0/1:17,16:33:99:538,0,538
11    30255185    rs6169    C    T    537.53    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=50;Dels=0.0;FS=6.464;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.181;QD=10.75;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=Y76;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_30255117_30256586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254122    GT:AD:DP:GQ:PL    0/1:30,19:50:99:568,0,903
11    30352473    rs35824273    C    CAG    1305.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=66.3957;IndelType=I;MQ=60.36;MQ0=0;QD=54.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532047    GT:AD:DP:GQ:PL    1/1:1,22:24:69.23:1348,69,0
11    30354707    rs1879671    G    T    140.24    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.53;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530909    GT:AD:DP:GQ:PL    0/1:3,5:8:98.92:170,0,99
11    30358032    rs77082221;rs77265461    CCT    C    419.16    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=92.3426;IndelType=D;MQ=57.75;MQ0=0;MQRankSum=1.54;QD=23.29;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530909    GT:AD:DP:GQ:PL    0/1:7,11:18:99:458,0,315
11    30358475    rs1222206    A    T    128.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530909    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
11    30438948    rs492604    C    T    419.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358117    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:452,36,0
11    30438958    rs11354703    CT    C    112.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.791;DB;DP=16;FS=0.0;HRun=15;HaplotypeScore=160.468;IndelType=D;MQ=53.49;MQ0=0;MQRankSum=0.791;QD=7.02;ReadPosRankSum=-0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358117    GT:AD:DP:GQ:PL    1/1:2,13:16:5.13:152,5,0
11    30601733    rs67243444    CT    C    392.41    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=3.789;DB;DP=32;FS=8.189;HRun=8;HaplotypeScore=81.1544;IndelType=D;MQ=60.34;MQ0=0;MQRankSum=-1.122;QD=12.26;ReadPosRankSum=1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528686    GT:AD:DP:GQ:PL    0/1:13,19:32:99:431,0,345
11    30900263    rs5790842    TA    T    129.93    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=38;FS=0.0;HRun=16;HaplotypeScore=323.9262;IndelType=D;MQ=54.41;MQ0=0;MQRankSum=1.536;QD=3.33;ReadPosRankSum=1.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406071    GT:AD:DP:GQ:PL    0/1:19,17:38:99:169,0,132
11    30902893    rs273613    T    C    470.76    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=36;Dels=0.0;FS=7.473;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.57;QD=13.08;ReadPosRankSum=-0.856;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406071    GT:AD:DP:GQ:PL    0/1:17,19:36:99:501,0,577
11    30920963    rs6144292    ATTTATATATTGT    A    1042.21    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=4.367;DB;DP=30;FS=3.522;HRun=0;HaplotypeScore=319.5288;IndelType=D;MQ=52.14;MQ0=0;MQRankSum=-2.22;QD=34.74;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339794    GT:AD:DP:GQ:PL    0/1:17,13:30:99:1081,0,2640
11    30922081    rs273560    C    T    394.95    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=4.48;DB;DP=39;Dels=0.0;FS=4.378;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.508;QD=10.13;ReadPosRankSum=0.926;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339794    GT:AD:DP:GQ:PL    0/1:24,15:39:99:425,0,702
11    30930374    rs175399    A    C    220.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.772;QD=13.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339794    GT:AD:DP:GQ:PL    0/1:8,8:16:99:251,0,252
11    30930393    rs175398    T    G    347.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=15.79;ReadPosRankSum=0.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339794    GT:AD:DP:GQ:PL    0/1:11,11:22:99:377,0,376
11    30938218    rs273610    G    A    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339794    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
11    30953608    rs163877    A    G    131.95    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=11.0;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339794    GT:AD:DP:GQ:PL    0/1:7,5:12:99:162,0,246
11    30965855    rs273605    A    T    695.20    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.44;DB;DP=47;Dels=0.0;FS=4.368;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.824;QD=14.79;ReadPosRankSum=0.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339794    GT:AD:DP:GQ:PL    0/1:21,26:47:99:725,0,660
11    30974203    rs10767883    T    A    161.15    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.332;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.115;QD=10.07;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339794    GT:AD:DP:GQ:PL    0/1:10,6:16:99:191,0,354
11    31128721    rs208078    G    T    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437348    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
11    31284798    rs63251260    G    A    81.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452803    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
11    31648529    rs2273943    G    A    230.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350638    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:264,21,0
11    31648800    .    CT    C    51.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DP=12;FS=0.0;HRun=1;HaplotypeScore=83.9005;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=1.422;QD=4.31;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350638    GT:AD:DP:GQ:PL    0/1:6,6:12:90.79:91,0,190
11    31653956    rs4922872    C    A    1934.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350638    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1968,144,0
11    31671543    rs75155674    A    G    58.10    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.26;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350638    GT:AD:DP:GQ:PL    0/1:3,5:8:88.09:88,0,104
11    31810298    rs1506    T    A    811.93    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.928;DB;DP=71;Dels=0.0;FS=13.875;HRun=0;HaplotypeScore=1.9986;MQ=60.0;MQ0=0;MQRankSum=1.079;QD=11.44;ReadPosRankSum=2.682;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350638    GT:AD:DP:GQ:PL    0/1:44,27:71:99:842,0,1463
11    31812215    rs3026393    A    C    431.10    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.912;DB;DP=40;Dels=0.0;FS=1.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=10.78;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455099    GT:AD:DP:GQ:PL    0/1:23,17:40:99:461,0,682
11    31815362    rs667773    G    A    749.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.32;DB;DP=48;Dels=0.0;FS=6.243;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.577;QD=15.61;ReadPosRankSum=2.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455099    GT:AD:DP:GQ:PL    0/1:24,24:48:99:779,0,730
11    32113057    rs223045    A    G    42.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=10.55;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000054950    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:72,0,36
11    32118925    rs223073    A    G    821.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000054950    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:855,63,0
11    32122003    rs2281411    C    A    234.71    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.437;QD=16.76;ReadPosRankSum=-0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532721    GT:AD:DP:GQ:PL    0/1:5,8:14:99:265,0,162
11    32122020    rs2073223    T    G    335.01    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.746;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.95;MQ0=0;MQRankSum=-0.675;QD=15.23;ReadPosRankSum=0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532721    GT:AD:DP:GQ:PL    0/1:10,12:22:99:365,0,296
11    32122268    rs223065    C    A    75.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.74;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530348    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,115
11    32124685    rs223059    G    A    70.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.43;MQ0=0;MQRankSum=0.55;QD=10.08;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530348    GT:AD:DP:GQ:PL    0/1:3,4:7:99:101,0,105
11    32124978    rs4876    T    C    848.37    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.861;DB;DP=56;Dels=0.0;FS=1.054;HRun=0;HaplotypeScore=0.0;MQ=47.39;MQ0=1;MQRankSum=0.552;QD=15.15;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=H229;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_32124827_32125026;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000532942    GT:AD:DP:GQ:PL    0/1:25,31:56:99:878,0,697
11    32125961    rs11529889    C    T    165.32    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.905;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.49;MQ0=0;MQRankSum=-0.253;QD=7.87;ReadPosRankSum=-1.629;SNPEFF_AMINO_ACID_CHANGE=V10;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_32125932_32126234;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528630    GT:AD:DP:GQ:PL    0/1:13,8:21:99:195,0,327
11    32452001    rs72267419    GGAGA    G    228.96    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=24;FS=2.398;HRun=0;HaplotypeScore=162.1398;IndelType=D;MQ=58.87;MQ0=0;MQRankSum=0.678;QD=9.54;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332351    GT:AD:DP:GQ:PL    0/1:15,9:24:10.86:268,0,11
11    32608473    rs201881    G    A    1729.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EIF3M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323213    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1762,132,0
11    32610388    rs201877    A    T    501.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EIF3M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532054    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:535,39,0
11    32610968    rs201876    T    C    126.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EIF3M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531186    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
11    32615352    rs78870378    A    AT    604.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=4;HaplotypeScore=43.1599;IndelType=I;MQ=61.78;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EIF3M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531186    GT:AD:DP:GQ:PL    1/1:2,16:18:48.16:646,48,0
11    32623419    rs77379922    C    T    768.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335185    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:801,60,0
11    32624405    rs201893    C    T    1086.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=K1064;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_32623792_32624566;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC73;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335185    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1120,87,0
11    32637872    rs2467586    C    G    122.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335185    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
11    32657266    rs201854    T    C    1526.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_AMINO_ACID_CHANGE=T387;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_32657242_32657376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC73;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335185    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1559,123,0
11    32674627    rs172101    A    G    705.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335185    GT:AD:DP:GQ:PL    1/1:0,25:25:57.18:739,57,0
11    32676632    rs61176333    A    T    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335185    GT:AD:DP:GQ:PL    1/1:0,6:6:9.02:100,9,0
11    32874926    rs11032025    G    A    2276.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.39;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=P178;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_32874842_32879669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257836    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2310,181,0
11    32949463    rs60934028    A    AT    243.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.869;DB;DP=12;FS=0.0;HRun=13;HaplotypeScore=68.5211;IndelType=I;MQ=56.04;MQ0=0;MQRankSum=-0.579;QD=20.32;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078652    GT:AD:DP:GQ:PL    1/1:1,10:12:15.45:286,15,0
11    32954344    rs1022586    G    A    2463.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=V385I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_32953289_32956981;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSER1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399302    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2497,184,0
11    32956244    rs7940077    A    G    1401.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_AMINO_ACID_CHANGE=N1018S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_32953289_32956981;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSER1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399302    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1434,105,0
11    32956620    rs7481878    A    G    3714.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.121;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7884;MQ=59.16;MQ0=0;MQRankSum=-0.468;QD=32.02;ReadPosRankSum=1.644;SNPEFF_AMINO_ACID_CHANGE=P1143;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_32953289_32956981;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSER1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399302    GT:AD:DP:GQ:PL    1/1:3,113:116:99:3714,250,0
11    32975333    rs7395190    T    G    932.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078652    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:965,75,0
11    32990842    rs6416072    G    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QSER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528034    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    33049036    rs1884925    A    G    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427755    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
11    33049115    rs3818227    G    A    361.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427755    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:395,30,0
11    33050100    rs3802790    A    G    1024.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427755    GT:AD:DP:GQ:PL    1/1:0,30:30:78.24:1057,78,0
11    33053005    rs36077875    T    C    586.87    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.198;DB;DP=53;Dels=0.0;FS=1.035;HRun=2;HaplotypeScore=0.0;MQ=58.32;MQ0=0;MQRankSum=0.11;QD=11.07;ReadPosRankSum=1.007;SNPEFF_AMINO_ACID_CHANGE=F279;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33052924_33053135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311388    GT:AD:DP:GQ:PL    0/1:27,26:53:99:617,0,842
11    33053107    rs966191    C    T    1748.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6517;MQ=59.57;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=D313;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33052924_33053135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311388    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1781,129,0
11    33053317    rs4567427    A    G    125.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532078    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
11    33053737    rs4511261    C    T    1688.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532078    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1722,129,0
11    33054562    rs2273536    G    A    1959.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532078    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1992,147,0
11    33054596    rs2273537    G    A    1318.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532078    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1352,102,0
11    33054754    rs2273539    C    G    942.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532078    GT:AD:DP:GQ:PL    1/1:0,26:26:75.19:976,75,0
11    33054794    rs2273540    T    G    1306.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532078    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1339,111,0
11    33055078    rs1059432    C    T    624.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.06;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241051    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:658,48,0
11    33065394    rs1064005    C    T    8440.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=236;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.9;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=L25;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33065296_33065482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334274    GT:AD:DP:GQ:PL    1/1:0,236:236:99:8441,620,0
11    33065547    rs7926030    G    A    2671.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.71;MQ0=0;QD=33.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528898    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2705,217,0
11    33065680    rs1998159    A    T    153.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528898    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
11    33075933    rs6484636    A    G    81.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334274    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:113,9,0
11    33075970    rs6484637    A    C    431.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334274    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:464,36,0
11    33076191    rs2273544    T    C    2543.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=G72;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33076139_33076271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334274    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2576,205,0
11    33078643    rs2273546    T    C    5161.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.486;DB;DP=164;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8298;MQ=59.63;MQ0=0;MQRankSum=1.711;QD=31.47;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334274    GT:AD:DP:GQ:PL    1/1:1,163:164:99:5161,412,0
11    33079445    rs2273548    G    T    1565.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334274    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1598,117,0
11    33080496    rs11032133    T    C    1419.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=32.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530171    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1452,117,0
11    33080835    rs3758743    C    G    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530171    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
11    33087551    .    A    C    70.91    QDFilter2    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.37;DP=109;Dels=0.0;FS=13.143;HRun=2;HaplotypeScore=6.9117;MQ=57.72;MQ0=0;MQRankSum=1.078;QD=0.65;ReadPosRankSum=3.603;SNPEFF_AMINO_ACID_CHANGE=H162P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33087376_33087557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324357    GT:AD:DP:GQ:PL    0/1:47,60:109:99:101,0,1313
11    33106616    rs3758741    C    T    2312.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.4;MQ0=0;QD=31.67;SNPEFF_AMINO_ACID_CHANGE=Q359*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_33106496_33106744;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000324357    GT:AD:DP:GQ:PL    1/1:0,72:73:99:2345,178,0
11    33106908    rs3834432    C    CTTTATAG    1904.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=97.7413;IndelType=I;MQ=34.38;MQ0=0;QD=95.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323959    GT:AD:DP:GQ:PL    1/1:9,11:20:57.20:1946,57,0
11    33107102    rs10767987    T    C    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323959    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    33113653    rs7950763    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=12.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323959    GT:AD:DP:GQ:PL    1/1:0,3:4:6.02:79,6,0
11    33113910    rs113144162    A    AT    536.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=7;HaplotypeScore=40.4632;IndelType=I;MQ=61.53;MQ0=0;QD=25.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323959    GT:AD:DP:GQ:PL    1/1:5,16:21:48.15:578,48,0
11    33118137    rs7104129    G    T    106.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323959    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:139,12,0
11    33118274    rs7103953    A    G    289.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323959    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:322,27,0
11    33118529    rs11363325    GC    G    1464.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=1;HaplotypeScore=96.0223;IndelType=D;MQ=61.16;MQ0=0;QD=39.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323959    GT:AD:DP:GQ:PL    1/1:1,36:37:99:1506,108,0
11    33129997    rs11605353    C    T    216.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCP11L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324357    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:250,18,0
11    33183017    rs3736213    A    G    288.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_33182845_33183037;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431742    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:321,24,0
11    33183073    rs3808985    G    A    104.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.48;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CSTF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524775    GT:AD:DP:GQ:PL    0/1:2,4:6:63.71:135,0,64
11    33350325    rs266491    C    T    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303296    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
11    33360783    rs3847592    A    G    569.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534262    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:602,45,0
11    33360886    rs5790925    AT    A    2116.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=4;HaplotypeScore=163.1221;IndelType=D;MQ=60.72;MQ0=0;QD=35.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534262    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2158,181,0
11    33362723    rs266470    G    T    658.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534262    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:691,51,0
11    33362866    rs11032230    G    T    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534262    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    33370551    rs426194    T    C    292.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303296    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:326,27,0
11    33370884    rs4756641    G    A    259.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=25.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303296    GT:AD:DP:GQ:PL    1/1:0,9:10:24.07:293,24,0
11    33374391    rs3903400    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303296    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    33376095    rs4755571    A    G    2335.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.67;MQ0=0;QD=33.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456517    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2368,184,0
11    33564123    rs2076623    T    C    2046.06    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.265;DB;DP=122;Dels=0.0;FS=4.397;HRun=0;HaplotypeScore=0.8667;MQ=59.81;MQ0=0;MQRankSum=-0.859;QD=16.77;ReadPosRankSum=0.48;SNPEFF_AMINO_ACID_CHANGE=G41;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33563877_33565900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265654    GT:AD:DP:GQ:PL    0/1:58,64:122:99:2076,0,1752
11    33581153    rs2076627    T    C    175.02    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.46;ReadPosRankSum=1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265654    GT:AD:DP:GQ:PL    0/1:7,6:13:99:205,0,245
11    33604885    rs2273117    C    T    524.19    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=44;Dels=0.0;FS=6.448;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.332;QD=11.91;ReadPosRankSum=0.142;SNPEFF_AMINO_ACID_CHANGE=P1010;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33604884_33605047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536568    GT:AD:DP:GQ:PL    0/1:25,19:44:99:554,0,674
11    33604960    rs2273115    C    T    478.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.02;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=14.97;ReadPosRankSum=-0.534;SNPEFF_AMINO_ACID_CHANGE=I1035;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33604884_33605047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536568    GT:AD:DP:GQ:PL    0/1:16,16:32:99:509,0,435
11    33628103    rs2076626    T    G    449.30    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.73;QD=15.49;ReadPosRankSum=-1.685;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321505    GT:AD:DP:GQ:PL    0/1:11,18:29:99:479,0,380
11    33628117    rs2076625    A    C    735.41    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=2.738;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=19.88;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321505    GT:AD:DP:GQ:PL    0/1:15,22:37:99:765,0,466
11    33640104    rs768474    A    C    470.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.743;DB;DP=50;Dels=0.0;FS=9.482;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.287;QD=9.42;ReadPosRankSum=-0.406;SNPEFF_AMINO_ACID_CHANGE=R1311;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33640079_33640208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536568    GT:AD:DP:GQ:PL    0/1:30,20:50:99:501,0,950
11    33667333    rs1033543    A    G    1544.41    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DB;DP=107;Dels=0.0;FS=9.827;HRun=0;HaplotypeScore=1.3123;MQ=59.78;MQ0=0;MQRankSum=-1.24;QD=14.43;ReadPosRankSum=-0.51;SNPEFF_AMINO_ACID_CHANGE=T1379;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33667232_33667582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536568    GT:AD:DP:GQ:PL    0/1:55,52:107:99:1574,0,1576
11    33667596    rs1033542    T    C    86.04    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.055;DB;DP=17;Dels=0.0;FS=8.82;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=5.06;ReadPosRankSum=1.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321505    GT:AD:DP:GQ:PL    0/1:12,5:17:99:116,0,346
11    33773161    rs7479064    G    C    936.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529137    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:970,72,0
11    33775982    rs2272065    A    G    433.25    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=39;Dels=0.0;FS=3.132;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.294;QD=11.11;ReadPosRankSum=-0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529137    GT:AD:DP:GQ:PL    0/1:22,17:39:99:463,0,731
11    33778729    rs12224154    T    C    731.61    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.935;DB;DP=48;Dels=0.0;FS=9.304;HRun=0;HaplotypeScore=0.9665;MQ=58.94;MQ0=0;MQRankSum=-0.569;QD=15.24;ReadPosRankSum=0.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533103    GT:AD:DP:GQ:PL    0/1:22,26:48:99:762,0,761
11    33778831    rs34944910    C    A    106.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.67;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533103    GT:AD:DP:GQ:PL    0/1:2,4:6:65.93:136,0,66
11    33881016    rs3740617    T    C    1410.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=K121;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_33880122_33881121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LMO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395833    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1443,108,0
11    33902593    rs3740618    C    G    346.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.23;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.998;QD=12.38;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257818    GT:AD:DP:GQ:PL    0/1:16,12:28:99:377,0,510
11    33902612    rs3740619    C    A    342.36    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.527;DB;DP=37;Dels=0.0;FS=1.662;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.494;QD=9.25;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257818    GT:AD:DP:GQ:PL    0/1:23,14:37:99:372,0,748
11    34093349    rs11300930    AT    A    1312.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=6;HaplotypeScore=123.5688;IndelType=D;MQ=60.44;MQ0=0;QD=28.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPRIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341394    GT:AD:DP:GQ:PL    1/1:4,42:46:99:1355,126,0
11    34107785    rs4755360    G    A    1296.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPRIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531232    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1330,99,0
11    34113717    rs2982592    C    T    398.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPRIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341394    GT:AD:DP:GQ:PL    1/1:0,11:12:33.10:432,33,0
11    34130015    rs78307936    C    G    149.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.729;QD=14.99;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532503    GT:AD:DP:GQ:PL    0/1:5,5:10:99:180,0,140
11    34135571    rs2957482    A    G    111.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=27.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529523    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
11    34149199    rs2957512    T    C    1378.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257829    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1412,108,0
11    34152939    rs2957516    T    C    1433.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=Y389H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34152928_34153078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531159    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1466,108,0
11    34154331    rs2982618    T    G    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257829    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    34154432    rs2982617    A    G    859.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257829    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:892,69,0
11    34154641    rs2957518    C    T    2518.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=P490;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34154573_34154689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531159    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2551,193,0
11    34158411    rs2982615    A    G    724.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257829    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:757,57,0
11    34158431    rs2957521    T    C    490.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257829    GT:AD:DP:GQ:PL    1/1:1,16:17:45.12:524,45,0
11    34163705    rs2982612    T    C    660.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530017    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:693,51,0
11    34167427    rs2982611    G    A    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257829    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    34176214    rs2957525    A    G    1005.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298992    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1039,78,0
11    34183889    rs4756109    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    34188982    rs7120749    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    34189564    rs4756111    A    G    530.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298992    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:563,42,0
11    34226041    rs2955944    A    G    663.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298992    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:697,54,0
11    34460711    rs12270780    G    A    53.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241052    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
11    34470679    rs769218    G    A    178.89    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=13.76;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241052    GT:AD:DP:GQ:PL    0/1:7,6:13:99:209,0,250
11    34478073    rs2073058    A    G    120.32    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=10.03;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241052    GT:AD:DP:GQ:PL    0/1:7,5:12:99:150,0,236
11    34482908    rs769217    C    T    1310.53    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.635;DB;DP=94;Dels=0.0;FS=3.876;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=0.088;QD=13.94;ReadPosRankSum=-0.873;SNPEFF_AMINO_ACID_CHANGE=D389;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34482798_34482936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241052    GT:AD:DP:GQ:PL    0/1:45,49:94:99:1341,0,1222
11    34492443    rs17881488    C    A    671.13    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=47;Dels=0.0;FS=1.544;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.16;QD=14.28;ReadPosRankSum=-0.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525707    GT:AD:DP:GQ:PL    0/1:23,24:47:99:701,0,773
11    34492747    rs12803540    T    C    182.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=20.28;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525707    GT:AD:DP:GQ:PL    0/1:3,6:9:99:213,0,101
11    34501596    rs2296144    A    G    151.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=30.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429939    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
11    34511541    rs2231825    C    A    3413.64    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=5.567;DB;DP=249;DS;Dels=0.0;FS=2.189;HRun=0;HaplotypeScore=4.2517;MQ=59.63;MQ0=0;MQRankSum=1.588;QD=13.71;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532417    GT:AD:DP:GQ:PL    0/1:130,118:249:99:3414,0,3363
11    34527152    rs2231821    A    G    868.25    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=54;Dels=0.0;FS=1.128;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.57;QD=16.08;ReadPosRankSum=-0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257832    GT:AD:DP:GQ:PL    0/1:20,34:54:99:898,0,611
11    34673052    rs147272226    GA    G    299.79    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=4.128;DB;DP=25;FS=2.156;HRun=4;HaplotypeScore=113.9478;IndelType=D;MQ=64.99;MQ0=0;MQRankSum=4.128;QD=11.99;ReadPosRankSum=-0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527001    GT:AD:DP:GQ:PL    0/1:13,12:25:99:339,0,504
11    34678433    rs447228    C    T    465.11    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.963;DB;DP=31;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;MQRankSum=0.879;QD=15.0;ReadPosRankSum=0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257831    GT:AD:DP:GQ:PL    0/1:13,18:31:99:495,0,320
11    34678435    rs435537    C    G    910.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;QD=27.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257831    GT:AD:DP:GQ:PL    1/1:0,33:33:72.20:943,72,0
11    34680053    rs3818514    G    A    542.93    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.385;DB;DP=37;Dels=0.0;FS=4.715;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.441;QD=14.67;ReadPosRankSum=0.957;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529527    GT:AD:DP:GQ:PL    0/1:19,18:37:99:573,0,579
11    34680400    rs286891    T    A    555.51    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=32;Dels=0.0;FS=1.397;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.458;QD=17.36;ReadPosRankSum=-0.384;SNPEFF_AMINO_ACID_CHANGE=I252;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34680379_34682066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450654    GT:AD:DP:GQ:PL    0/1:13,19:32:99:586,0,410
11    34680634    rs286890    G    A    85.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EHF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529527    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
11    34904509    rs2288668    T    G    101.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.72;QD=16.84;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278359    GT:AD:DP:GQ:PL    0/1:2,4:6:65.41:131,0,65
11    34905145    rs2303957    T    C    96.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.03;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278359    GT:AD:DP:GQ:PL    0/1:2,4:6:64.94:126,0,65
11    34929860    rs7110223    A    G    860.04    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.549;DB;DP=44;Dels=0.0;FS=2.071;HRun=0;HaplotypeScore=1.7753;MQ=60.0;MQ0=0;MQRankSum=0.037;QD=19.55;ReadPosRankSum=-1.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278359    GT:AD:DP:GQ:PL    0/1:16,28:44:99:890,0,488
11    34929912    rs2915208    G    C    260.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=14.49;ReadPosRankSum=0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278359    GT:AD:DP:GQ:PL    0/1:8,10:18:99:291,0,282
11    34938265    rs2956109    C    T    63.52    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=6.854;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=7.06;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=P21;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34938119_34938362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227868    GT:AD:DP:GQ:PL    0/1:5,4:9:93.52:94,0,123
11    34938269    rs1049306    C    T    76.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=6.854;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=8.52;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=R23C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34938119_34938362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000227868    GT:AD:DP:GQ:PL    0/1:5,4:9:99:107,0,125
11    34938310    rs1049307    T    C    68.73    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.82;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=S36;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34938119_34938362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227868    GT:AD:DP:GQ:PL    0/1:3,4:7:98.72:99,0,107
11    34953055    rs12289218    C    A    109.09    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.236;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.89;MQ0=0;MQRankSum=2.412;QD=5.19;ReadPosRankSum=1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227868    GT:AD:DP:GQ:PL    0/1:13,7:21:99:139,0,379
11    34953088    rs11032932    G    T    50.15    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=11;HaplotypeScore=6.7255;MQ=53.95;MQ0=0;MQRankSum=-0.529;QD=4.18;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227868    GT:AD:DP:GQ:PL    0/1:5,7:12:80.14:80,0,135
11    34978873    rs147205484    CTACT    C    414.15    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=80.7948;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=0.048;QD=24.36;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227868    GT:AD:DP:GQ:PL    0/1:8,9:17:99:453,0,607
11    34979095    rs79170416    C    T    651.02    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.161;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.104;QD=11.63;ReadPosRankSum=-0.274;SNPEFF_AMINO_ACID_CHANGE=I109;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34978931_34979130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533550    GT:AD:DP:GQ:PL    0/1:31,25:56:99:681,0,904
11    34982141    rs7924969    G    A    156.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=10.42;ReadPosRankSum=0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533262    GT:AD:DP:GQ:PL    0/1:9,6:15:99:186,0,318
11    34988343    rs61760973    T    C    573.68    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.836;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.829;QD=8.44;ReadPosRankSum=0.789;SNPEFF_AMINO_ACID_CHANGE=P251;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_34988187_34988361;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448838    GT:AD:DP:GQ:PL    0/1:41,27:68:99:604,0,1268
11    34999861    rs11032963    G    A    138.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=17.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227868    GT:AD:DP:GQ:PL    0/1:2,6:8:61.35:168,0,61
11    35198007    rs111607249    G    A    70.40    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.06;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263398    GT:AD:DP:GQ:PL    0/1:3,4:7:99:100,0,105
11    35198032    rs4756195    A    G    576.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263398    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:610,45,0
11    35198108    rs4756196    A    G    575.67    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.704;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.085;QD=14.76;ReadPosRankSum=1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263398    GT:AD:DP:GQ:PL    0/1:18,21:39:99:606,0,555
11    35208251    rs3736812    A    G    217.25    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.118;QD=19.75;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263398    GT:AD:DP:GQ:PL    0/1:2,9:11:55.32:247,0,55
11    35223158    rs11033025    T    C    881.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525209    GT:AD:DP:GQ:PL    1/1:0,25:25:69.19:914,69,0
11    35226155    rs9666607    A    G    1877.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.69;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=K129R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_35226059_35226187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531110    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1910,141,0
11    35229673    rs1467558    T    C    1163.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_AMINO_ACID_CHANGE=I105T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_35229652_35229753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533222    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1196,90,0
11    35244044    rs7116739    G    C    1006.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525293    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1039,78,0
11    35244058    rs7116432    A    G    319.50    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=15.21;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525293    GT:AD:DP:GQ:PL    0/1:11,10:21:99:349,0,392
11    35250518    rs927335    A    T    449.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;QD=37.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263398    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:483,36,0
11    35282334    rs1570216    T    C    219.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.936;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=15.68;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479543    GT:AD:DP:GQ:PL    0/1:7,7:14:99:250,0,243
11    35287000    rs72401312    G    GT    202.82    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.538;DB;DP=27;FS=0.0;HRun=13;HaplotypeScore=139.8776;IndelType=I;MQ=58.27;MQ0=0;MQRankSum=0.708;QD=7.51;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278379    GT:AD:DP:GQ:PL    0/1:14,11:27:99:242,0,203
11    35302668    rs2236273    A    G    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278379    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    35308369    rs1042113    T    C    1073.80    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=86;Dels=0.0;FS=4.383;HRun=1;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=-0.251;QD=12.49;ReadPosRankSum=1.574;SNPEFF_AMINO_ACID_CHANGE=V398;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_35308304_35308498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395750    GT:AD:DP:GQ:PL    0/1:46,40:86:99:1104,0,1378
11    35322940    rs11033064    A    G    150.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=10.74;ReadPosRankSum=0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449068    GT:AD:DP:GQ:PL    0/1:8,6:14:99:180,0,292
11    35323200    rs2273689    A    G    737.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.927;DB;DP=23;Dels=0.0;FS=4.031;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.927;QD=32.05;ReadPosRankSum=0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449068    GT:AD:DP:GQ:PL    1/1:2,21:23:18.44:770,18,0
11    35327748    rs752949    C    T    581.23    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=37;Dels=0.0;FS=1.271;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=15.71;ReadPosRankSum=-0.777;SNPEFF_AMINO_ACID_CHANGE=P192;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_35327621_35327789;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395750    GT:AD:DP:GQ:PL    0/1:17,20:37:99:611,0,445
11    35327825    rs3895234    A    G    185.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=15;Dels=0.0;FS=3.282;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.256;QD=12.39;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278379    GT:AD:DP:GQ:PL    0/1:6,9:15:99:216,0,166
11    35334032    rs56028027    T    C    509.66    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=39;Dels=0.0;FS=3.928;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.69;QD=13.07;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278379    GT:AD:DP:GQ:PL    0/1:21,18:39:99:540,0,678
11    35338893    rs2273687    G    C    457.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.415;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.28;MQ0=0;MQRankSum=0.138;QD=14.31;ReadPosRankSum=0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278379    GT:AD:DP:GQ:PL    0/1:16,16:32:99:488,0,512
11    35453796    rs11344760    GC    G    330.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=24.4235;IndelType=D;MQ=62.13;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527605    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:372,30,0
11    35456453    rs675227    G    C    265.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278360    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:299,24,0
11    35492045    rs7115023    A    G    106.12    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.79;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278360    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,178
11    35495951    rs16927508    C    T    90.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278360    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
11    35495997    rs16927509    T    A    329.03    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=20.56;ReadPosRankSum=1.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278360    GT:AD:DP:GQ:PL    0/1:5,11:16:99:359,0,147
11    35706780    rs3740798    G    C    380.51    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.64;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.461;QD=11.19;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299413    GT:AD:DP:GQ:PL    0/1:20,13:34:99:411,0,650
11    35827958    rs61881297    A    G    984.86    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.9;DB;DP=81;Dels=0.0;FS=4.75;HRun=0;HaplotypeScore=0.734;MQ=59.72;MQ0=0;MQRankSum=0.723;QD=12.16;ReadPosRankSum=-1.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532066    GT:AD:DP:GQ:PL    0/1:44,37:81:99:1015,0,1279
11    36057626    rs262451    G    A    368.30    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.348;DB;DP=31;Dels=0.0;FS=1.992;HRun=0;HaplotypeScore=0.5784;MQ=59.1;MQ0=0;MQRankSum=0.126;QD=11.88;ReadPosRankSum=0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315571    GT:AD:DP:GQ:PL    0/1:18,13:31:99:398,0,469
11    36103228    rs1138807    A    G    1154.59    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.15;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=59.75;MQ0=0;MQRankSum=0.814;QD=12.28;ReadPosRankSum=-0.226;SNPEFF_AMINO_ACID_CHANGE=P24;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_36103203_36103328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524419    GT:AD:DP:GQ:PL    0/1:49,45:94:99:1185,0,1516
11    36103381    rs3740962    A    G    591.56    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.408;DB;DP=36;Dels=0.0;FS=4.874;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.158;QD=16.43;ReadPosRankSum=0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315571    GT:AD:DP:GQ:PL    0/1:17,19:36:99:622,0,564
11    36103442    rs11033408    C    G    67.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=6.73;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLRAD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315571    GT:AD:DP:GQ:PL    0/1:6,4:10:97.32:97,0,219
11    36293048    rs7107433    G    A    218.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=13.66;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=L103;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_36290834_36293377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf55;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355500    GT:AD:DP:GQ:PL    0/1:8,8:16:99:249,0,220
11    36422792    rs330261    G    A    422.06    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.273;DB;DP=35;Dels=0.0;FS=5.871;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.138;QD=12.06;ReadPosRankSum=-0.551;SNPEFF_AMINO_ACID_CHANGE=A15T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_36422547_36422835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311599    GT:AD:DP:GQ:PL    0/1:18,17:35:99:452,0,536
11    36424729    rs7120381    G    A    64.38    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.05;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524380    GT:AD:DP:GQ:PL    0/1:5,3:8:94.37:94,0,168
11    36424988    rs12292430    G    A    127.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=53.03;MQ0=0;MQRankSum=0.135;QD=9.08;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524380    GT:AD:DP:GQ:PL    0/1:6,8:14:99:157,0,133
11    36425098    rs34672506    T    A    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524380    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    36440631    rs6484852    C    A    267.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311599    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:300,24,0
11    36440638    rs74521478    T    C    171.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=19.07;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311599    GT:AD:DP:GQ:PL    0/1:3,6:9:94.81:202,0,95
11    36453506    rs746761    T    C    867.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529034    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:900,66,0
11    36458777    rs577054    C    A    44.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=6.37;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311599    GT:AD:DP:GQ:PL    0/1:4,3:7:74.56:75,0,135
11    36459130    rs4756316    T    C    176.29    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.94;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.032;QD=9.28;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311599    GT:AD:DP:GQ:PL    0/1:11,8:19:99:206,0,402
11    36484208    rs514352    T    C    915.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=T270;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_36483892_36486753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311599    GT:AD:DP:GQ:PL    1/1:0,26:26:75.22:949,75,0
11    36514290    rs2303439    T    C    110.71    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.435;QD=5.83;ReadPosRankSum=0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348124    GT:AD:DP:GQ:PL    0/1:14,5:19:99:141,0,517
11    36516488    rs143141923    T    C    520.96    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=39;Dels=0.0;FS=2.439;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.92;QD=13.36;ReadPosRankSum=0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348124    GT:AD:DP:GQ:PL    0/1:22,17:39:99:551,0,772
11    36518824    rs5030456    T    TA    505.47    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.617;DB;DP=54;FS=1.241;HRun=7;HaplotypeScore=115.8257;IndelType=I;MQ=58.79;MQ0=0;MQRankSum=-2.15;QD=9.36;ReadPosRankSum=-1.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348124    GT:AD:DP:GQ:PL    0/1:35,19:54:99:544,0,696
11    36595157    rs4151025    G    A    1019.58    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=76;Dels=0.0;FS=3.28;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.373;QD=13.24;ReadPosRankSum=3.568;SNPEFF_AMINO_ACID_CHANGE=A101;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_36594841_36601306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299440    GT:AD:DP:GQ:PL    0/1:39,37:76:99:1050,0,1140
11    36669778    rs1566245    C    T    396.69    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=31;Dels=0.0;FS=3.142;HRun=0;HaplotypeScore=0.9469;MQ=59.25;MQ0=0;MQRankSum=0.229;QD=12.8;ReadPosRankSum=0.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527108    GT:AD:DP:GQ:PL    0/1:17,14:31:99:427,0,557
11    40137543    rs2953310    T    C    678.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.231;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=1.475;QD=13.57;ReadPosRankSum=-1.184;SNPEFF_AMINO_ACID_CHANGE=R100;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_40135753_40137884;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278198    GT:AD:DP:GQ:PL    0/1:25,25:50:99:709,0,867
11    40780985    rs7113513    T    A    143.58    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=23.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528697    GT:AD:DP:GQ:PL    0/1:1,5:6:15.38:174,0,15
11    40781345    rs11036066    G    T    231.48    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=1.092;QD=17.81;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528697    GT:AD:DP:GQ:PL    0/1:5,8:13:99:261,0,149
11    40781425    rs10768630    C    T    188.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528697    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:221,18,0
11    43401032    rs77046094    T    G    103.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.85;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000039989    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,100
11    43413146    .    A    AT    264.97    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DP=37;FS=0.0;HRun=13;HaplotypeScore=194.5055;IndelType=I;MQ=57.69;MQ0=0;MQRankSum=1.562;QD=7.16;ReadPosRankSum=-1.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000039989    GT:AD:DP:GQ:PL    0/1:24,12:37:30.69:304,0,31
11    43472895    rs6485426    G    C    133.73    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=10.29;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299240    GT:AD:DP:GQ:PL    0/1:8,5:13:99:164,0,288
11    43513350    rs80290742    C    T    90.17    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=6.44;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000039989    GT:AD:DP:GQ:PL    0/1:9,5:14:99:120,0,326
11    43513363    rs2306566    C    T    398.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.452;QD=22.11;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000039989    GT:AD:DP:GQ:PL    0/1:6,12:18:99:428,0,198
11    43581287    rs185097505    G    T    149.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=14.96;ReadPosRankSum=0.365;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526615    GT:AD:DP:GQ:PL    0/1:4,6:10:99:180,0,140
11    43702581    rs4573669    G    A    248.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278353    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
11    43702615    rs4573668    G    C    208.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278353    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
11    43876435    rs3736505    A    G    1160.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534053    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1194,87,0
11    43876698    rs11555762    C    T    2207.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=S280L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_43876694_43878160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HSD17B12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278353    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2240,163,0
11    43905440    rs2271818    C    G    641.65    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.344;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=22.13;ReadPosRankSum=0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALKBH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524742    GT:AD:DP:GQ:PL    0/1:9,20:29:99:672,0,285
11    43905484    rs2271817    T    G    689.72    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.36;DB;DP=62;Dels=0.0;FS=1.432;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.008;QD=11.12;ReadPosRankSum=-0.114;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALKBH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524742    GT:AD:DP:GQ:PL    0/1:35,27:62:99:720,0,1180
11    43908104    rs3740983    T    G    425.17    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=28;Dels=0.0;FS=6.455;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=15.18;ReadPosRankSum=-0.507;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALKBH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524742    GT:AD:DP:GQ:PL    0/1:13,15:28:99:455,0,437
11    43911365    rs2434478    T    C    1312.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5678;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_AMINO_ACID_CHANGE=T118;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_43911275_43911378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALKBH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378840    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1346,105,0
11    43923463    rs2434485    A    T    131.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALKBH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378840    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
11    43940566    rs7926534    T    C    1906.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALKBH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302708    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1940,141,0
11    43940644    rs1048928    G    T    2204.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=G242;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_43940588_43940686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ALKBH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302708    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2238,172,0
11    43964842    rs7077    G    C    189.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.93;SNPEFF_AMINO_ACID_CHANGE=G246A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_43964055_43965888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf96;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528572    GT:AD:DP:GQ:PL    1/1:0,10:10:18.05:222,18,0
11    44080210    rs2074051    T    C    589.29    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.756;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.69;MQ0=0;MQRankSum=0.084;QD=9.82;ReadPosRankSum=-0.176;SNPEFF_AMINO_ACID_CHANGE=C529R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_44080096_44080249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCSL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378832    GT:AD:DP:GQ:PL    0/1:33,27:60:99:619,0,1118
11    44089161    rs178514    G    A    919.10    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.688;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;MQRankSum=-1.347;QD=14.36;ReadPosRankSum=-2.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263776    GT:AD:DP:GQ:PL    0/1:28,36:64:99:949,0,779
11    44089570    rs178515    G    C    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533404    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
11    44096238    rs178521    G    A    758.21    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.658;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.51;MQ0=0;MQRankSum=1.279;QD=17.63;ReadPosRankSum=0.559;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524990    GT:AD:DP:GQ:PL    0/1:17,26:43:99:788,0,540
11    44096284    rs5791604    CTCTTTCTT    C    337.38    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.26;DB;DP=27;FS=4.102;HRun=0;HaplotypeScore=314.5789;IndelType=D;MQ=47.56;MQ0=0;MQRankSum=-0.362;QD=12.5;ReadPosRankSum=-1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524990    GT:AD:DP:GQ:PL    0/1:19,8:27:99:376,0,649
11    44097226    rs178523    A    G    67.61    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.51;ReadPosRankSum=-1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524990    GT:AD:DP:GQ:PL    0/1:6,3:9:97.61:98,0,216
11    44104701    rs79395013    C    CCT    3013.04    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.269;DB;DP=134;FS=4.247;HRun=0;HaplotypeScore=361.6205;IndelType=I;MQ=60.14;MQ0=0;MQRankSum=-1.949;QD=22.49;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527557    GT:AD:DP:GQ:PL    0/1:70,63:134:99:3052,0,2226
11    44146257    rs10769018    A    G    357.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343631    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:390,33,0
11    44151457    rs7125352    T    C    134.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343631    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
11    44151480    rs11037881    G    T    96.74    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.386;QD=9.67;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343631    GT:AD:DP:GQ:PL    0/1:3,7:10:95.08:127,0,95
11    44151577    rs11037882    T    A    438.02    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=3.116;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.414;QD=13.27;ReadPosRankSum=-0.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343631    GT:AD:DP:GQ:PL    0/1:16,17:33:99:468,0,543
11    44219286    rs4755233    C    T    271.27    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.368;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=10.43;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343631    GT:AD:DP:GQ:PL    0/1:17,9:26:99:301,0,539
11    44228148    rs1027377    C    T    120.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343631    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
11    44255614    rs11037909    T    C    216.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=20;Dels=0.0;FS=4.887;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.116;QD=10.84;ReadPosRankSum=-0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531161    GT:AD:DP:GQ:PL    0/1:12,8:20:99:247,0,302
11    44257802    rs3740878    T    C    422.02    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.305;DB;DP=27;Dels=0.0;FS=2.251;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.237;QD=15.63;ReadPosRankSum=0.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531161    GT:AD:DP:GQ:PL    0/1:13,14:27:99:452,0,445
11    44286566    rs3802805    G    A    722.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=H358;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_44281994_44286733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329255    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:755,57,0
11    44289071    rs12419361    G    A    581.13    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=51;Dels=0.0;FS=1.454;HRun=1;HaplotypeScore=2.6469;MQ=59.0;MQ0=0;MQRankSum=-0.231;QD=11.39;ReadPosRankSum=-0.111;SNPEFF_AMINO_ACID_CHANGE=L293;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_44289044_44289172;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329255    GT:AD:DP:GQ:PL    0/1:28,23:51:99:611,0,881
11    44289289    rs10742699    A    G    717.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329255    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:750,57,0
11    44289312    rs10769024    C    G    456.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329255    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:490,36,0
11    44296828    rs11037927    C    T    167.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=11.98;ReadPosRankSum=1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329255    GT:AD:DP:GQ:PL    0/1:8,6:14:99:198,0,243
11    44297054    rs10769028    T    C    3928.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.84;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=S207;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_44296898_44297208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329255    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3928,307,0
11    44297253    rs11037929    A    G    570.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329255    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:603,45,0
11    44297343    rs11037930    C    A    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329255    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
11    44626397    rs12789262    G    A    37.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.37;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525210    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:67,0,28
11    44636839    rs883752    C    T    538.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=G118;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_44636822_44636923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD82;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227155    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:571,42,0
11    44639551    rs9971373    T    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526958    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    44639921    rs2303863    C    T    520.51    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=3.791;DB;DP=31;Dels=0.0;FS=2.022;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.298;QD=16.79;ReadPosRankSum=-0.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526958    GT:AD:DP:GQ:PL    0/1:14,17:31:99:551,0,310
11    44640016    rs2303861    A    G    164.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526958    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
11    44640268    rs1139971    A    G    525.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=I216V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_44640190_44640273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD82;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342935    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:559,42,0
11    44640640    rs7107335    C    G    855.48    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.569;DB;DP=62;Dels=0.0;FS=0.98;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=-0.229;QD=13.8;ReadPosRankSum=0.51;SNPEFF_AMINO_ACID_CHANGE=V231;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_44640599_44640676;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD82;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342935    GT:AD:DP:GQ:PL    0/1:32,30:62:99:885,0,919
11    44640792    rs4755266    T    C    282.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342935    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:315,24,0
11    44940873    rs11038214    G    A    878.44    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.429;DB;DP=60;Dels=0.0;FS=1.158;HRun=0;HaplotypeScore=1.6553;MQ=59.62;MQ0=0;MQRankSum=0.178;QD=14.64;ReadPosRankSum=0.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520999    GT:AD:DP:GQ:PL    0/1:29,31:60:99:908,0,803
11    44948052    rs835988    G    T    452.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340160    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:485,36,0
11    44950784    rs835990    G    A    389.63    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.29;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7987;MQ=59.42;MQ0=0;MQRankSum=0.326;QD=9.74;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TP53I11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308212    GT:AD:DP:GQ:PL    0/1:26,14:40:99:420,0,876
11    44959061    rs2279361    C    A    636    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=2.068;DB;DP=35;Dels=0.0;FS=1.939;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.504;QD=18.17;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TP53I11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533937    GT:AD:DP:GQ:PL    0/1:12,23:35:99:666,0,367
11    44959206    rs2279362    C    A    469.18    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=32;Dels=0.0;FS=7.935;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.906;QD=14.66;ReadPosRankSum=1.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TP53I11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308212    GT:AD:DP:GQ:PL    0/1:15,17:32:99:499,0,449
11    44959924    rs2306666    G    A    74.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TP53I11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308212    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:105,0,68
11    45203212    rs11038341    C    T    575.29    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=45;Dels=0.0;FS=5.01;HRun=0;HaplotypeScore=1.9779;MQ=59.49;MQ0=0;MQRankSum=0.318;QD=12.78;ReadPosRankSum=-0.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263765    GT:AD:DP:GQ:PL    0/1:24,21:45:99:605,0,821
11    45234877    rs11038356    T    C    537.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524938    GT:AD:DP:GQ:PL    1/1:0,21:21:48.12:571,48,0
11    45235433    rs3781704    G    C    425.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524938    GT:AD:DP:GQ:PL    1/1:0,16:16:42.10:459,42,0
11    45672261    rs3802762    A    G    1161.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=S71;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_45670427_45672515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308064    GT:AD:DP:GQ:PL    1/1:0,35:35:93.28:1194,93,0
11    45832935    rs1139266    G    A    240.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=34.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530670    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
11    45868850    rs34448404    C    CG    252.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=5;HaplotypeScore=13.5573;IndelType=I;MQ=61.53;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417225    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:294,21,0
11    45877529    rs2292913    A    G    2825.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417225    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2859,226,0
11    45877688    rs2292912    C    G    1018.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417225    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1051,78,0
11    45891418    rs7123390    G    A    669.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495237    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:703,51,0
11    45891508    rs4755345    A    G    1380.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.655;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6775;MQ=58.78;MQ0=0;MQRankSum=-0.654;QD=28.75;ReadPosRankSum=-0.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495237    GT:AD:DP:GQ:PL    1/1:2,46:48:77.71:1413,78,0
11    45926445    rs2271847    T    C    1453.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449465    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1487,114,0
11    45931502    rs10838529    G    A    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241014    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    45935253    rs2271845    C    T    565.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525192    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:599,45,0
11    45935384    rs1132349    A    G    902.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=25.06;SNPEFF_AMINO_ACID_CHANGE=Y196;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_45935370_45935489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000532681    GT:AD:DP:GQ:PL    1/1:0,36:36:75.21:935,75,0
11    45936035    rs3802758    G    A    864.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525229    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:898,69,0
11    45937267    rs10742772    C    T    4048.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=V116I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_45937254_45937387;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000241041    GT:AD:DP:GQ:PL    1/1:0,114:114:99:4049,304,0
11    45937968    rs3215273    CTA    C    1041.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=101.5592;IndelType=D;MQ=59.5;MQ0=0;QD=40.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241041    GT:AD:DP:GQ:PL    1/1:2,24:26:72.24:1084,72,0
11    45944994    rs5791711    G    GC    1170.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=1;HaplotypeScore=60.4822;IndelType=I;MQ=62.13;MQ0=0;QD=39.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYLTL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325468    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1212,84,0
11    45949201    rs884668    C    T    713.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYLTL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414027    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:746,54,0
11    45949534    rs939105    C    T    1023.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.11;SNPEFF_AMINO_ACID_CHANGE=F525;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_45949471_45949620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYLTL1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529052    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1056,78,0
11    45950146    rs141206902    C    G    483.45    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.396;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.553;QD=21.02;ReadPosRankSum=-1.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYLTL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389968    GT:AD:DP:GQ:PL    0/1:6,17:23:99:513,0,187
11    45959669    rs10742773    C    T    1561.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527753    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1595,123,0
11    46001229    rs2946005    G    C    1616.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529734    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1649,117,0
11    46105688    rs2932515    G    A    1261.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF21A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527782    GT:AD:DP:GQ:PL    1/1:0,40:40:96.28:1295,96,0
11    46342081    rs72361993    TG    T    348.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=4;HaplotypeScore=41.5845;IndelType=D;MQ=60.77;MQ0=0;QD=24.91;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000446415    GT:AD:DP:GQ:PL    1/1:3,11:14:33.10:391,33,0
11    46342259    rs79068197    A    AG    606.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=40.9225;IndelType=I;MQ=60.72;MQ0=0;QD=40.41;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_46342260_46342972;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000529193    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:648,45,0
11    46396304    .    G    A    324.85    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.545;MQ=55.37;MQ0=0;MQRankSum=-0.035;QD=10.48;ReadPosRankSum=-0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524448    GT:AD:DP:GQ:PL    0/1:14,11:31:99:355,0,217
11    46678478    .    TAC    T    120.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=6;FS=0.0;HRun=0;HaplotypeScore=19.3183;IndelType=D;MQ=61.78;MQ0=0;MQRankSum=-0.736;QD=20.13;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528145    GT:AD:DP:GQ:PL    0/1:1,5:6:21.30:160,0,21
11    46685495    rs72130375    C    CT    124.11    PASS    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=61;FS=3.854;HRun=18;HaplotypeScore=674.4809;IndelType=I;MQ=38.75;MQ0=0;MQRankSum=-1.634;QD=2.03;ReadPosRankSum=1.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528704    GT:AD:DP:GQ:PL    0/1:49,10:61:39.19:163,0,39
11    46685513    .    TG    T    435.24    PASS    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=5.29;DP=79;FS=42.062;HRun=1;HaplotypeScore=700.2222;IndelType=D;MQ=44.17;MQ0=0;MQRankSum=-4.118;QD=5.51;ReadPosRankSum=-0.629;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528704    GT:AD:DP:GQ:PL    0/1:68,11:79:99:474,0,642
11    46686260    rs10838610    G    A    659.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528984    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:692,51,0
11    46694313    rs67065551    GTC    G    1329.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=119.8119;IndelType=D;MQ=59.55;MQ0=0;QD=44.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311956    GT:AD:DP:GQ:PL    1/1:0,30:30:84.29:1371,84,0
11    46701392    rs117735038    C    T    181.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=10.1;ReadPosRankSum=-1.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525488    GT:AD:DP:GQ:PL    0/1:10,8:18:99:212,0,262
11    46702920    rs4268467    T    C    2649.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7904;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_AMINO_ACID_CHANGE=K153;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_46702843_46702929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311956    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2683,208,0
11    46722731    rs4752928    T    C    294.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF408;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311764    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:327,27,0
11    46744925    rs2070852    G    C    1682.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469189    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1716,129,0
11    46760466    rs3136515    G    T    78.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312055    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
11    46760756    rs3136516    G    A    1354.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=35.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312055    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1387,108,0
11    46776697    rs4237546    A    G    261.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312055    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:294,21,0
11    46801502    rs7118891    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528593    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    46802094    rs6485691    C    A    449.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528593    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:483,36,0
11    46804583    rs6485692    G    C    44.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528593    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    46804761    rs11038990    C    T    103.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=10.36;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312055    GT:AD:DP:GQ:PL    0/1:6,4:10:99:134,0,219
11    46812227    rs7940578    T    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312055    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    46822686    rs10734549    C    A    615.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312055    GT:AD:DP:GQ:PL    1/1:0,17:18:51.16:648,51,0
11    46837625    rs66794555    AC    A    139.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=7;HaplotypeScore=44.9934;IndelType=D;MQ=47.12;MQ0=0;QD=23.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525248    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:182,18,0
11    46837633    rs58152993    AT    A    228.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=42.3936;IndelType=D;MQ=51.02;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525248    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
11    46840119    rs67438673    TG    T    1086.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=8;HaplotypeScore=124.927;IndelType=D;MQ=60.78;MQ0=0;QD=23.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525248    GT:AD:DP:GQ:PL    1/1:7,40:47:99:1129,117,0
11    46889713    rs2306026    T    C    635.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527656    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:669,51,0
11    46890165    rs3816614    C    T    1144.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.323;MQ=58.11;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=R1646Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_46890151_46890264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:1,35:37:87.28:1177,87,0
11    46890388    rs2290884    C    G    373.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527656    GT:AD:DP:GQ:PL    1/1:0,11:11:33.07:407,33,0
11    46893108    rs2306029    T    C    324.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.61;SNPEFF_AMINO_ACID_CHANGE=S1554G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_46893076_46893184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,15:15:30.05:357,30,0
11    46897253    rs2306032    G    C    527.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:560,45,0
11    46897792    rs7115038    C    G    263.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:296,24,0
11    46897865    rs11039015    C    T    659.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:693,51,0
11    46897995    rs964551    G    T    3412.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3413,259,0
11    46898595    rs7119251    G    A    360.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.7;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:393,30,0
11    46898771    rs6485702    T    C    1581.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.554;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.277;QD=31.63;ReadPosRankSum=-1.525;SNPEFF_AMINO_ACID_CHANGE=I1086V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_46898750_46898890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:1,49:50:91.74:1615,92,0
11    46907827    rs2306027    C    T    722.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:756,57,0
11    46911457    rs2306035    T    C    735.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:768,57,0
11    46911704    rs2306036    C    T    678.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:712,54,0
11    46914583    rs10838631    T    C    974.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7206;MQ=59.23;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=K546;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_46914524_46914680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,29:30:81.25:1007,81,0
11    46914598    rs10769215    A    G    897.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.99;MQ0=0;QD=28.05;SNPEFF_AMINO_ACID_CHANGE=D541;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_46914524_46914680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,31:31:78.20:931,78,0
11    46917983    rs898604    G    A    1038.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534404    GT:AD:DP:GQ:PL    1/1:0,29:29:84.23:1072,84,0
11    46921469    .    A    T    1230.04    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=0.558;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=59.75;MQ0=0;MQRankSum=-0.141;QD=16.18;ReadPosRankSum=-0.761;SNPEFF_AMINO_ACID_CHANGE=S125R;SNPEFF_CODON_CHANGE=agT/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_46921414_46921527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    0/1:29,46:76:99:1260,0,756
11    46924174    rs12807111    T    A    251.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378623    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
11    47187071    .    GA    G    72.57    QDFilter2    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DP=104;FS=0.0;HRun=15;HaplotypeScore=660.561;IndelType=D;MQ=54.12;MQ0=0;MQRankSum=2.823;QD=0.7;ReadPosRankSum=2.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524412    GT:AD:DP:GQ:PL    0/1:76,17:104:99:112,0,1065
11    47188314    rs4752820    T    C    3105.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.03;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=A150;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47188311_47188437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526342    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3139,241,0
11    47188592    rs3740690    T    C    489.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=28.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524412    GT:AD:DP:GQ:PL    1/1:0,17:17:48.09:522,48,0
11    47204175    rs2279438    A    T    2198.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PACSIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298838    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2232,168,0
11    47238522    rs326212    T    C    1452.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=T126;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47238409_47238600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256996    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1486,117,0
11    47238665    rs326211    A    G    375.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256996    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:408,30,0
11    47251199    rs830085    G    A    318.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256996    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:351,27,0
11    47251369    rs11445579    C    CT    281.06    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=46;FS=0.0;HRun=17;HaplotypeScore=336.8386;IndelType=I;MQ=50.61;MQ0=0;MQRankSum=-1.662;QD=6.11;ReadPosRankSum=-1.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256996    GT:AD:DP:GQ:PL    0/1:27,17:46:8.64:320,0,9
11    47255903    rs326223    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256997    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    47259668    rs326222    T    C    441.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256997    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:474,36,0
11    47298201    rs2291119    C    T    443.61    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DB;DP=23;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=19.29;ReadPosRankSum=-0.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422579    GT:AD:DP:GQ:PL    0/1:7,16:23:99:474,0,213
11    47298360    rs326214    G    A    1534.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=E125;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47298283_47298414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428807    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1568,114,0
11    47303275    rs326217    T    C    572.98    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.212;DB;DP=39;Dels=0.0;FS=19.227;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-0.471;QD=14.69;ReadPosRankSum=-1.813;SNPEFF_AMINO_ACID_CHANGE=N480;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47303126_47303304;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311027    GT:AD:DP:GQ:PL    0/1:16,23:39:99:603,0,551
11    47306630    rs35233100    C    T    678.90    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=0.852;DB;DP=72;Dels=0.0;FS=2.116;HRun=0;HaplotypeScore=0.734;MQ=59.68;MQ0=0;MQRankSum=-1.041;QD=9.43;ReadPosRankSum=0.414;SNPEFF_AMINO_ACID_CHANGE=R766*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_47306492_47306745;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000311027    GT:AD:DP:GQ:PL    0/1:47,25:72:99:709,0,1292
11    47307332    .    G    GTCATTA    404.09    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=22.6007;IndelType=I;MQ=38.96;MQ0=0;QD=67.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489415    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:446,15,0
11    47331116    rs1017594    T    C    2142.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=L1265;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47331058_47331163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395344    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2175,160,0
11    47354905    rs11570115    T    C    109.89    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.16;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311027    GT:AD:DP:GQ:PL    0/1:5,7:12:99:140,0,101
11    47361084    rs2856653    T    C    78.72    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.457;DB;DP=16;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.457;QD=4.92;ReadPosRankSum=1.763;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395342    GT:AD:DP:GQ:PL    0/1:12,4:16:99:109,0,387
11    47362431    rs2697926    A    G    437.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395342    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:470,36,0
11    47364762    rs896818    A    G    886.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.15;MQ0=0;QD=26.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256993    GT:AD:DP:GQ:PL    1/1:0,33:33:78.19:920,78,0
11    47365199    rs2856650    G    A    231.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=20;Dels=0.0;FS=5.035;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=11.59;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256993    GT:AD:DP:GQ:PL    0/1:10,10:20:99:262,0,217
11    47371484    rs11570050    AG    A    210.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=23.7777;IndelType=D;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227163    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:252,21,0
11    47377273    rs59011238    A    C    119.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533968    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
11    47380593    rs3740689    G    A    207.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227163    GT:AD:DP:GQ:PL    1/1:0,10:10:18.05:241,18,0
11    47397353    rs56030824    G    A    136.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=13.6;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227163    GT:AD:DP:GQ:PL    0/1:5,5:10:99:166,0,171
11    47399602    rs2278890    G    A    35.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227163    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
11    47431728    rs2010519    A    G    1034.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=57.87;MQ0=0;QD=31.35;SNPEFF_AMINO_ACID_CHANGE=E28G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47431617_47431946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354884    GT:AD:DP:GQ:PL    1/1:0,33:33:87.25:1068,87,0
11    47431966    rs755555    C    T    311.61    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.505;DB;DP=26;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.311;QD=11.98;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354884    GT:AD:DP:GQ:PL    0/1:15,11:26:99:342,0,366
11    47432034    rs755554    G    C    285.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.133;QD=19.05;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354884    GT:AD:DP:GQ:PL    0/1:6,9:15:99:316,0,158
11    47434986    rs2293576    G    A    467.04    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.502;DB;DP=30;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.046;QD=15.57;ReadPosRankSum=-0.46;SNPEFF_AMINO_ACID_CHANGE=A191;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47434951_47435058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354884    GT:AD:DP:GQ:PL    0/1:13,17:30:99:497,0,347
11    47436531    rs11039228    G    T    466.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=33.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298852    GT:AD:DP:GQ:PL    1/1:0,13:14:39.12:499,39,0
11    47440758    rs2293579    G    A    408.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.351;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.919;QD=12.01;ReadPosRankSum=-0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524447    GT:AD:DP:GQ:PL    0/1:17,17:34:99:438,0,538
11    47446292    rs55927797    A    T    364.45    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.377;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.475;QD=18.22;ReadPosRankSum=-0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529500    GT:AD:DP:GQ:PL    0/1:7,13:20:99:394,0,201
11    47447346    rs10838709    C    T    292.57    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=16.25;ReadPosRankSum=0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298852    GT:AD:DP:GQ:PL    0/1:8,9:18:99:323,0,257
11    47462837    rs10716680    AG    A    875.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=7;HaplotypeScore=105.5294;IndelType=D;MQ=59.61;MQ0=0;QD=28.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298854    GT:AD:DP:GQ:PL    1/1:1,30:31:90.20:917,90,0
11    47469439    rs7111873    A    G    396.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_AMINO_ACID_CHANGE=Y152;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47469364_47469702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298854    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:430,33,0
11    47500400    rs12224672    C    T    208.78    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=20.88;ReadPosRankSum=-1.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532146    GT:AD:DP:GQ:PL    0/1:3,7:10:91.35:239,0,91
11    47504075    rs3740699    G    T    301.62    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.65;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.083;QD=20.11;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525841    GT:AD:DP:GQ:PL    0/1:3,12:15:83.53:332,0,84
11    47587577    rs111295836    TC    T    229.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=5;HaplotypeScore=26.9208;IndelType=D;MQ=58.63;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326656    GT:AD:DP:GQ:PL    1/1:1,8:9:24.07:272,24,0
11    47599714    rs4331047    A    G    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527079    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
11    47600352    rs4450136    A    G    197.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104942.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450908    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
11    47600438    rs2280231    C    T    80.23    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.91;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104942.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450908    GT:AD:DP:GQ:PL    0/1:4,5:9:99:110,0,102
11    47601977    rs2233354    C    T    440.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104942.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450908    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:474,39,0
11    47609867    rs4486587    G    A    935.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9623;MQ=57.37;MQ0=0;QD=27.51;SNPEFF_AMINO_ACID_CHANGE=A163T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47609591_47610746;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM180B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538490    GT:AD:DP:GQ:PL    1/1:1,33:34:78.21:968,78,0
11    47640429    rs1064608    G    C    1748.61    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.735;DB;DP=160;Dels=0.0;FS=1.29;HRun=0;HaplotypeScore=0.9665;MQ=59.74;MQ0=0;MQRankSum=1.099;QD=10.93;ReadPosRankSum=-1.323;SNPEFF_AMINO_ACID_CHANGE=P142A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47639865_47640471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTCH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542981    GT:AD:DP:GQ:PL    0/1:82,76:160:99:1779,0,2387
11    47652476    rs117523937    A    T    330.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=22.03;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MTCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533571    GT:AD:DP:GQ:PL    0/1:5,10:15:99:360,0,156
11    47684450    rs6485766    C    A    806.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.576;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.576;QD=36.68;ReadPosRankSum=1.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528244    GT:AD:DP:GQ:PL    1/1:1,21:22:63.21:840,63,0
11    47684908    rs11039329    T    C    68.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528244    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:99,0,27
11    47689343    rs10742817    C    T    460.15    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=26;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.129;QD=17.7;ReadPosRankSum=0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529712    GT:AD:DP:GQ:PL    0/1:12,14:26:99:490,0,400
11    47701528    rs12286721    C    A    608.66    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=53;Dels=0.0;FS=1.054;HRun=1;HaplotypeScore=0.8941;MQ=58.68;MQ0=0;MQRankSum=1.167;QD=11.48;ReadPosRankSum=-0.526;SNPEFF_AMINO_ACID_CHANGE=M54I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47701525_47701625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528609    GT:AD:DP:GQ:PL    0/1:28,25:53:99:639,0,818
11    47712213    rs7941404    C    T    624.79    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=74;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=3.8315;MQ=59.06;MQ0=0;MQRankSum=-0.376;QD=8.44;ReadPosRankSum=-1.559;SNPEFF_AMINO_ACID_CHANGE=R293H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47712098_47712410;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532595    GT:AD:DP:GQ:PL    0/1:48,26:74:99:655,0,1412
11    47736314    rs4752863    C    G    861.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263773    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:894,66,0
11    47752775    rs17788930    A    G    61.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.4;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524696    GT:AD:DP:GQ:PL    0/1:2,3:5:69.37:92,0,69
11    47772401    rs11039366    C    T    1151.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533707    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1185,87,0
11    47774366    .    A    AAAAC    364.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DP=14;FS=0.0;HRun=0;HaplotypeScore=50.0876;IndelType=I;MQ=62.28;MQ0=0;MQRankSum=0.201;QD=26.02;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540172    GT:AD:DP:GQ:PL    0/1:7,6:14:99:403,0,297
11    47775952    rs11039369    A    G    181.62    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.093;QD=13.97;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263773    GT:AD:DP:GQ:PL    0/1:6,7:13:99:212,0,207
11    47776047    rs7928954    G    A    2220.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263773    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2253,163,0
11    47776283    rs7929014    C    T    447.06    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=4.737;DB;DP=34;Dels=0.0;FS=7.574;HRun=0;HaplotypeScore=0.9998;MQ=59.32;MQ0=0;MQRankSum=0.955;QD=13.15;ReadPosRankSum=-0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263773    GT:AD:DP:GQ:PL    0/1:18,16:34:99:477,0,495
11    47786926    rs138813894    A    AAAAAG    3456.21    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.822;DB;DP=150;DS;FS=0.0;HRun=0;HaplotypeScore=672.3964;IndelType=I;MQ=60.22;MQ0=0;MQRankSum=-0.192;QD=23.04;ReadPosRankSum=-0.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263773    GT:AD:DP:GQ:PL    0/1:105,44:150:99:3456,0,1018
11    47801101    rs7114813    A    G    1543.57    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=1.551;DB;DP=111;Dels=0.0;FS=0.746;HRun=1;HaplotypeScore=0.9916;MQ=59.79;MQ0=0;MQRankSum=1.355;QD=13.91;ReadPosRankSum=0.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378460    GT:AD:DP:GQ:PL    0/1:55,56:111:99:1574,0,1718
11    47813436    rs10742821    C    T    1623.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528071    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1657,123,0
11    47814280    rs754434    A    G    2033.20    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.463;DB;DP=165;Dels=0.0;FS=3.198;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=0.195;QD=12.32;ReadPosRankSum=-1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378460    GT:AD:DP:GQ:PL    0/1:92,73:165:99:2063,0,2866
11    47826090    rs11039402    A    C    786.95    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.032;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.79;QD=12.49;ReadPosRankSum=1.947;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528501    GT:AD:DP:GQ:PL    0/1:33,30:63:99:817,0,1030
11    47834346    rs10838773    G    A    210.92    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.61;QD=12.41;ReadPosRankSum=-0.049;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531016    GT:AD:DP:GQ:PL    0/1:10,7:17:99:241,0,293
11    47834592    rs7110289    G    A    1209.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=D162;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47834434_47834599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528501    GT:AD:DP:GQ:PL    1/1:0,35:35:90.30:1242,90,0
11    47837408    rs6485786    G    C    108.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=12.03;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378460    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,184
11    47837638    rs7130715    G    A    463.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378460    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:496,36,0
11    47840864    rs71308358    C    CA    359.52    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.728;DB;DP=56;FS=0.0;HRun=14;HaplotypeScore=243.9289;IndelType=I;MQ=58.76;MQ0=0;MQRankSum=-0.992;QD=6.42;ReadPosRankSum=-1.125;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527126    GT:AD:DP:GQ:PL    0/1:34,20:56:99:399,0,319
11    47843133    rs7122182    A    C    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378460    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    47857253    rs3816605    T    C    491.01    HaplotypeScoreFilter13    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=71;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=16.3144;MQ=55.42;MQ0=0;MQRankSum=-1.066;QD=6.92;ReadPosRankSum=-0.994;SNPEFF_AMINO_ACID_CHANGE=T101A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_47857203_47857361;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP160;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426372    GT:AD:DP:GQ:PL    0/1:37,22:71:99:521,0,1042
11    48145247    rs2270992    T    C    1273.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=T145;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48145165_48145252;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527952    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1306,102,0
11    48149755    rs905475    C    T    132.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527952    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
11    48157869    rs2270994    T    C    1615.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=59.63;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440289    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1648,132,0
11    48164721    rs1566729    T    C    284    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278456    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
11    48166267    rs4752904    G    C    2019.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_AMINO_ACID_CHANGE=E872D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48166227_48166437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418331    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2052,153,0
11    48170870    rs4752908    T    G    1497.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278456    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1530,129,0
11    48171225    rs1018137    C    T    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278456    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
11    48171793    rs10734565    T    C    779.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527026    GT:AD:DP:GQ:PL    1/1:0,26:26:69.19:813,69,0
11    48181721    rs4752911    G    T    676.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278456    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:710,54,0
11    48184971    rs3830431    CCTTT    C    1006.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=173.4251;IndelType=D;MQ=58.77;MQ0=0;QD=47.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278456    GT:AD:DP:GQ:PL    1/1:1,20:21:57.19:1048,57,0
11    48184983    rs2270990    G    T    203.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.57;MQ0=0;QD=7.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278456    GT:AD:DP:GQ:PL    1/1:0,28:28:18.06:237,18,0
11    48238179    rs1566736    C    T    85.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309562    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
11    48238302    rs1566737    G    T    573.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309562    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:606,45,0
11    48238421    rs10769329    T    G    2015.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.503;QD=32.51;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=A20;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48238344_48239314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309562    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2049,141,0
11    48266582    rs7120549    A    C    877.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302329    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:910,66,0
11    48267589    rs1503180    A    G    1104.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=36.82;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302329    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1138,84,0
11    48285184    rs905481    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320048    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    48285301    rs713325    A    G    74.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.94;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320048    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
11    48285842    rs1503193    A    G    1310.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=31.95;SNPEFF_AMINO_ACID_CHANGE=R144G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48285413_48286330;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320048    GT:AD:DP:GQ:PL    1/1:0,40:41:99:1343,105,0
11    48285856    rs10838850    C    T    1115.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=30.15;SNPEFF_AMINO_ACID_CHANGE=G148;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48285413_48286330;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320048    GT:AD:DP:GQ:PL    1/1:0,37:37:93.23:1148,93,0
11    48285981    rs76884411    CCTT    C    1069.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=129.7488;IndelType=D;MQ=57.12;MQ0=0;QD=42.76;SNPEFF_AMINO_ACID_CHANGE=TF190T;SNPEFF_CODON_CHANGE=accttc/acc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_11_48285413_48286330;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320048    GT:AD:DP:GQ:PL    1/1:2,23:25:69.23:1111,69,0
11    48286231    rs10838851    T    A    1620.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.26;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=Y273*;SNPEFF_CODON_CHANGE=taT/taA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_48285413_48286330;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000320048    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1654,123,0
11    48286234    rs61732322    A    G    696.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.647;DB;DP=49;Dels=0.0;FS=1.248;HRun=1;HaplotypeScore=0.7887;MQ=58.19;MQ0=0;MQRankSum=2.374;QD=14.21;ReadPosRankSum=0.131;SNPEFF_AMINO_ACID_CHANGE=T274;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48285413_48286330;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320048    GT:AD:DP:GQ:PL    0/1:21,28:49:99:726,0,626
11    48286256    rs10838852    C    T    1266.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.39;MQ0=0;QD=33.33;SNPEFF_AMINO_ACID_CHANGE=P282S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48285413_48286330;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4X1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320048    GT:AD:DP:GQ:PL    1/1:0,38:38:96.32:1300,96,0
11    48346423    rs75646016    A    G    75.97    QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.316;DB;DP=44;Dels=0.0;FS=4.313;HRun=0;HaplotypeScore=0.0;MQ=57.22;MQ0=0;MQRankSum=-2.31;QD=1.73;ReadPosRankSum=0.225;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:37,7:44:99:106,0,1377
11    48346427    rs74892148    T    C    68.56    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=45;Dels=0.0;FS=4.401;HRun=0;HaplotypeScore=0.9894;MQ=57.28;MQ0=0;MQRankSum=-1.926;QD=1.52;ReadPosRankSum=0.579;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:38,7:45:98.55:99,0,1391
11    48346450    rs79776366    A    G    89.76    QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=0.599;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.0;MQ0=0;MQRankSum=-3.979;QD=1.36;ReadPosRankSum=1.118;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:56,10:66:99:120,0,1822
11    48346458    rs77295176    A    G    114.08    QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=0.434;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=56.77;MQ0=0;MQRankSum=-4.551;QD=1.5;ReadPosRankSum=0.449;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:64,12:76:99:144,0,2031
11    48346487    rs33950768    TC    T    43.71    QDFilter2    AB=0.916;AC=1;AF=0.50;AN=2;BaseQRankSum=5.104;DB;DP=87;FS=0.0;HRun=5;HaplotypeScore=416.8697;IndelType=D;MQ=56.91;MQ0=0;MQRankSum=-5.117;QD=0.5;ReadPosRankSum=0.684;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:79,8:87:82.74:83,0,2732
11    48346579    rs72911452    C    A    49.68    QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=0.007;DB;DP=75;Dels=0.0;FS=3.296;HRun=1;HaplotypeScore=0.9947;MQ=57.37;MQ0=0;MQRankSum=-3.078;QD=0.66;ReadPosRankSum=-1.835;SNPEFF_AMINO_ACID_CHANGE=D29E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:64,11:75:79.67:80,0,2287
11    48346604    rs75647397    T    G    163.26    PASS    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.726;DB;DP=66;Dels=0.0;FS=7.643;HRun=0;HaplotypeScore=0.734;MQ=56.26;MQ0=0;MQRankSum=-3.466;QD=2.47;ReadPosRankSum=1.016;SNPEFF_AMINO_ACID_CHANGE=F38V;SNPEFF_CODON_CHANGE=Ttc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:53,13:66:99:193,0,1871
11    48346615    rs73463988    G    A    212.18    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.536;DB;DP=65;Dels=0.0;FS=7.395;HRun=0;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=-3.755;QD=3.26;ReadPosRankSum=1.352;SNPEFF_AMINO_ACID_CHANGE=G41;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:52,13:65:99:242,0,1711
11    48346660    rs34634151    TTTGCTGATC    T    779.95    PASS    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=5.336;DB;DP=65;FS=20.831;HRun=0;HaplotypeScore=611.5655;IndelType=D;MQ=55.36;MQ0=0;MQRankSum=-4.641;QD=12.0;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=LLI57-;SNPEFF_CODON_CHANGE=ttgctgatc/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:56,9:65:99:819,0,7043
11    48346681    rs78490540    G    A    128.46    QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=1.267;DB;DP=67;Dels=0.0;FS=29.206;HRun=0;HaplotypeScore=0.0;MQ=55.95;MQ0=0;MQRankSum=-4.995;QD=1.92;ReadPosRankSum=-1.872;SNPEFF_AMINO_ACID_CHANGE=T63;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:55,12:67:99:158,0,1698
11    48346729    rs73463990    G    C    587.33    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=3.16;DB;DP=71;Dels=0.0;FS=16.894;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.933;QD=8.27;ReadPosRankSum=-0.5;SNPEFF_AMINO_ACID_CHANGE=T79;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:46,25:71:99:617,0,1519
11    48346791    rs73463994    C    T    1548.61    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.95;DB;DP=113;Dels=0.0;FS=5.759;HRun=2;HaplotypeScore=1.2434;MQ=57.08;MQ0=0;MQRankSum=-1.8;QD=13.7;ReadPosRankSum=-0.359;SNPEFF_AMINO_ACID_CHANGE=S100F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:57,56:113:99:1579,0,1918
11    48346822    rs73463997    A    C    2110.13    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=160;Dels=0.0;FS=0.659;HRun=1;HaplotypeScore=3.8316;MQ=56.96;MQ0=0;MQRankSum=-1.954;QD=13.19;ReadPosRankSum=0.252;SNPEFF_AMINO_ACID_CHANGE=S110;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:84,76:160:99:2140,0,2682
11    48346843    rs73463998    C    T    2115.27    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=161;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9428;MQ=56.68;MQ0=0;MQRankSum=-1.264;QD=13.14;ReadPosRankSum=-1.025;SNPEFF_AMINO_ACID_CHANGE=I117;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:84,77:161:99:2145,0,2795
11    48346916    rs77069283    G    C    1472.98    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.568;DB;DP=145;Dels=0.0;FS=5.854;HRun=0;HaplotypeScore=0.8667;MQ=56.7;MQ0=0;MQRankSum=-3.798;QD=10.09;ReadPosRankSum=-0.141;SNPEFF_AMINO_ACID_CHANGE=V142L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:86,59:145:99:1503,0,2755
11    48346924    rs72911454    T    C    1219.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.272;DB;DP=136;Dels=0.0;FS=10.063;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=-1.497;QD=8.97;ReadPosRankSum=0.002;SNPEFF_AMINO_ACID_CHANGE=A144;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:85,51:136:99:1249,0,2766
11    48346932    rs80285195    G    A    1063.75    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.568;DB;DP=130;Dels=0.0;FS=6.624;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;MQRankSum=-3.392;QD=8.18;ReadPosRankSum=-0.441;SNPEFF_AMINO_ACID_CHANGE=R10H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:83,47:130:99:1094,0,2561
11    48346961    rs75493089    A    T    554.05    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=122;Dels=0.0;FS=11.665;HRun=0;HaplotypeScore=3.6555;MQ=56.05;MQ0=0;MQRankSum=-4.475;QD=4.54;ReadPosRankSum=-0.963;SNPEFF_AMINO_ACID_CHANGE=N157Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:82,40:122:99:584,0,2697
11    48346962    rs74589050    A    G    543.10    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=119;Dels=0.0;FS=8.191;HRun=0;HaplotypeScore=3.6555;MQ=55.95;MQ0=0;MQRankSum=-4.226;QD=4.56;ReadPosRankSum=-1.273;SNPEFF_AMINO_ACID_CHANGE=N157S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:78,40:119:99:573,0,2606
11    48346999    rs72473367    T    G    364.64    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=2.849;DB;DP=87;Dels=0.0;FS=0.974;HRun=1;HaplotypeScore=1.4972;MQ=54.55;MQ0=0;MQRankSum=-5.308;QD=4.19;ReadPosRankSum=0.83;SNPEFF_AMINO_ACID_CHANGE=L169;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:60,27:87:99:395,0,2157
11    48347014    rs72473368    G    A    471.02    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.327;DB;DP=78;Dels=0.0;FS=3.671;HRun=0;HaplotypeScore=2.7736;MQ=54.87;MQ0=0;MQRankSum=-5.614;QD=6.04;ReadPosRankSum=-0.093;SNPEFF_AMINO_ACID_CHANGE=W174*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:54,24:78:99:501,0,1804
11    48347023    rs67077733    C    T    511.96    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=1.744;DB;DP=73;Dels=0.0;FS=3.689;HRun=2;HaplotypeScore=1.9849;MQ=54.84;MQ0=0;MQRankSum=-4.832;QD=7.01;ReadPosRankSum=-1.521;SNPEFF_AMINO_ACID_CHANGE=G177;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:49,24:73:99:542,0,1491
11    48347067    rs73464001    C    T    545.70    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.993;DB;DP=66;Dels=0.0;FS=5.738;HRun=0;HaplotypeScore=0.0;MQ=54.45;MQ0=0;MQRankSum=-3.652;QD=8.27;ReadPosRankSum=1.091;SNPEFF_AMINO_ACID_CHANGE=P192L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:43,23:66:99:576,0,1291
11    48347100    rs73465905    C    T    455.36    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=63;Dels=0.0;FS=6.207;HRun=0;HaplotypeScore=2.179;MQ=53.03;MQ0=0;MQRankSum=-3.774;QD=7.23;ReadPosRankSum=0.51;SNPEFF_AMINO_ACID_CHANGE=A203V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:39,23:63:99:485,0,1127
11    48347124    rs79019124    A    G    356.33    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.413;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=52.11;MQ0=0;MQRankSum=-4.244;QD=6.14;ReadPosRankSum=-2.543;SNPEFF_AMINO_ACID_CHANGE=E211G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:35,23:58:99:386,0,1033
11    48347130    rs77395846    C    G    274.46    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=59;Dels=0.0;FS=4.775;HRun=1;HaplotypeScore=1.9654;MQ=52.61;MQ0=0;MQRankSum=-4.287;QD=4.65;ReadPosRankSum=-1.408;SNPEFF_AMINO_ACID_CHANGE=A213G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346472_48347507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:37,22:59:99:304,0,1126
11    48347267    rs73465910    T    C    609.52    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.292;DB;DP=67;Dels=0.0;FS=2.844;HRun=0;HaplotypeScore=0.0;MQ=56.97;MQ0=0;MQRankSum=-1.162;QD=9.1;ReadPosRankSum=-1.067;SNPEFF_AMINO_ACID_CHANGE=C122R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:43,24:67:99:640,0,1377
11    48347306    rs73465911    G    T    709.75    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=1.028;DB;DP=102;Dels=0.0;FS=0.915;HRun=2;HaplotypeScore=0.0;MQ=56.42;MQ0=0;MQRankSum=-2.073;QD=6.96;ReadPosRankSum=1.222;SNPEFF_AMINO_ACID_CHANGE=V135F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:70,32:102:99:740,0,2332
11    48347342    rs76958755    G    A    468.72    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.114;DB;DP=118;Dels=0.0;FS=6.545;HRun=0;HaplotypeScore=1.6208;MQ=56.51;MQ0=0;MQRankSum=-2.093;QD=3.97;ReadPosRankSum=-0.857;SNPEFF_AMINO_ACID_CHANGE=V147M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:84,33:118:99:499,0,2711
11    48347346    rs74590631    A    T    592.66    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=3.425;DB;DP=117;Dels=0.0;FS=16.748;HRun=1;HaplotypeScore=0.7887;MQ=56.69;MQ0=0;MQRankSum=-1.59;QD=5.07;ReadPosRankSum=-0.695;SNPEFF_AMINO_ACID_CHANGE=H148L;SNPEFF_CODON_CHANGE=cAt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:86,31:117:99:623,0,2764
11    48347358    rs76274696    C    T    587.29    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=111;Dels=0.0;FS=14.03;HRun=3;HaplotypeScore=0.0;MQ=56.32;MQ0=0;MQRankSum=-3.291;QD=5.29;ReadPosRankSum=-2.236;SNPEFF_AMINO_ACID_CHANGE=T152I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:79,32:111:99:617,0,2601
11    48347363    rs77814753    C    T    564.31    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=112;Dels=0.0;FS=9.929;HRun=0;HaplotypeScore=0.0;MQ=57.1;MQ0=0;MQRankSum=-0.777;QD=5.04;ReadPosRankSum=-1.189;SNPEFF_AMINO_ACID_CHANGE=P154S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:83,29:112:99:594,0,2665
11    48347392    rs79127479    T    C    245.80    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.815;DB;DP=92;Dels=0.0;FS=11.221;HRun=0;HaplotypeScore=2.5559;MQ=56.97;MQ0=0;MQRankSum=-2.124;QD=2.67;ReadPosRankSum=1.284;SNPEFF_AMINO_ACID_CHANGE=Y163;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:72,19:92:99:276,0,2322
11    48347419    rs73465913    A    G    92.09    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=67;Dels=0.0;FS=2.028;HRun=0;HaplotypeScore=1.8273;MQ=57.26;MQ0=0;MQRankSum=-1.463;QD=1.37;ReadPosRankSum=-0.668;SNPEFF_AMINO_ACID_CHANGE=P172;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48346904_48347455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:54,12:67:99:122,0,1728
11    48347492    rs79775762    G    A    64.22    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.018;DB;DP=23;Dels=0.0;FS=6.435;HRun=1;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;MQRankSum=0.862;QD=2.79;ReadPosRankSum=0.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:18,5:23:94.22:94,0,649
11    48347498    rs78309417    A    T    54.18    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.527;QD=2.26;ReadPosRankSum=1.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:20,4:24:84.18:84,0,699
11    48347539    rs79172951    G    A    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=5.48;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319856    GT:AD:DP:GQ:PL    0/1:3,2:6:62.84:63,0,105
11    48366793    rs73453172    C    G    147.75    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-0.312;QD=11.37;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:7,6:13:99:178,0,250
11    48366812    rs75488365    A    C    222.97    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.927;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.772;QD=14.86;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:7,8:15:99:253,0,246
11    48366829    rs78338548    G    A    163.30    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.799;DB;DP=18;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.288;QD=9.07;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:10,8:18:99:193,0,278
11    48366895    rs72473369    A    C    417.23    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.618;DB;DP=46;Dels=0.0;FS=2.724;HRun=1;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=-0.842;QD=9.07;ReadPosRankSum=0.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:30,16:46:99:447,0,974
11    48366958    rs76319939    T    G    455.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.678;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.76;MQ0=0;MQRankSum=-1.019;QD=8.93;ReadPosRankSum=1.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:34,17:51:99:485,0,1056
11    48366971    rs75689989    G    C    65.97    QDFilter2    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=1.198;DB;DP=47;Dels=0.0;FS=1.191;HRun=0;HaplotypeScore=0.0;MQ=56.99;MQ0=0;MQRankSum=-0.034;QD=1.4;ReadPosRankSum=2.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:32,15:47:95.97:96,0,1105
11    48366972    rs75621879    G    A    65.72    QDFilter2    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=48;Dels=0.0;FS=1.201;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.102;QD=1.37;ReadPosRankSum=2.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:34,14:48:95.71:96,0,1186
11    48367050    rs113897236    T    TAG    607.71    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=4.263;DB;DP=65;FS=4.867;HRun=0;HaplotypeScore=440.0291;IndelType=I;MQ=56.73;MQ0=0;MQRankSum=-1.664;QD=9.35;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:52,13:65:99:647,0,1964
11    48367073    rs7941588    A    C    2449.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=56.04;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2483,196,0
11    48367097    rs73453179    A    G    347.84    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.945;DB;DP=86;Dels=0.0;FS=4.256;HRun=0;HaplotypeScore=0.0;MQ=55.5;MQ0=0;MQRankSum=-4.669;QD=4.04;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:66,20:86:99:378,0,2358
11    48367133    rs79453749    C    A    167.33    QDFilter2    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=2.704;DB;DP=113;Dels=0.0;FS=3.823;HRun=0;HaplotypeScore=4.7776;MQ=55.96;MQ0=0;MQRankSum=-5.863;QD=1.48;ReadPosRankSum=0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:96,17:113:99:197,0,2669
11    48367136    rs78927905    C    T    166.33    QDFilter2    AB=0.845;AC=1;AF=0.50;AN=2;BaseQRankSum=2.782;DB;DP=110;Dels=0.0;FS=3.735;HRun=0;HaplotypeScore=2.4116;MQ=56.07;MQ0=0;MQRankSum=-6.217;QD=1.51;ReadPosRankSum=-0.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:93,17:110:99:196,0,2661
11    48367155    rs75315666    T    A    127.68    QDFilter2;SnpCluster    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=1.367;DB;DP=117;Dels=0.0;FS=1.027;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=-6.568;QD=1.09;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:100,17:117:99:158,0,3074
11    48367159    rs75667244    C    T    110    QDFilter2;SnpCluster    AB=0.858;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.039;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;MQRankSum=-6.38;QD=0.97;ReadPosRankSum=-0.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:97,16:113:99:140,0,3080
11    48367163    rs74650698    A    G    85.60    QDFilter2;SnpCluster    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=4.432;DB;DP=110;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.33;MQ0=0;MQRankSum=-6.369;QD=0.78;ReadPosRankSum=-0.904;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:94,16:110:99:116,0,2978
11    48367170    rs77876442    G    A    47.26    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=2.514;DB;DP=110;Dels=0.0;FS=1.116;HRun=1;HaplotypeScore=0.0;MQ=56.59;MQ0=0;MQRankSum=-6.201;QD=0.43;ReadPosRankSum=-1.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:95,15:110:77.25:77,0,3100
11    48367249    rs74815769    C    T    300.85    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.477;DB;DP=74;Dels=0.0;FS=3.891;HRun=0;HaplotypeScore=1.9536;MQ=55.48;MQ0=0;MQRankSum=-2.382;QD=4.07;ReadPosRankSum=0.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:55,19:74:99:331,0,1916
11    48367252    rs76287086    G    A    278.56    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=77;Dels=0.0;FS=2.271;HRun=2;HaplotypeScore=1.9536;MQ=55.66;MQ0=0;MQRankSum=-3.231;QD=3.62;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:56,21:77:99:309,0,2010
11    48367311    rs73453180    T    C    853.54    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.632;DB;DP=96;Dels=0.0;FS=5.568;HRun=0;HaplotypeScore=1.9957;MQ=56.19;MQ0=0;MQRankSum=-2.433;QD=8.89;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:60,36:96:99:884,0,1954
11    48367363    rs73453183    C    T    930.60    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.658;DB;DP=113;Dels=0.0;FS=1.602;HRun=1;HaplotypeScore=2.3724;MQ=56.39;MQ0=0;MQRankSum=-1.221;QD=8.24;ReadPosRankSum=0.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:70,43:113:99:961,0,2319
11    48367387    rs78788561    C    T    823.28    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.984;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=56.26;MQ0=0;MQRankSum=-1.313;QD=7.55;ReadPosRankSum=1.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:72,37:109:99:853,0,2349
11    48367419    rs77576379    G    A    658.91    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.844;DB;DP=92;Dels=0.0;FS=7.983;HRun=0;HaplotypeScore=0.8941;MQ=56.13;MQ0=0;MQRankSum=-2.684;QD=7.16;ReadPosRankSum=-1.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:65,27:92:99:689,0,2055
11    48367424    rs77976451    C    G    602.18    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=90;Dels=0.0;FS=8.727;HRun=2;HaplotypeScore=0.5784;MQ=56.04;MQ0=0;MQRankSum=-2.026;QD=6.69;ReadPosRankSum=-1.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:64,26:90:99:632,0,1981
11    48367455    rs79175163    G    A    253.88    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=0.644;DB;DP=78;Dels=0.0;FS=21.28;HRun=0;HaplotypeScore=1.9953;MQ=54.44;MQ0=0;MQRankSum=-4.591;QD=3.25;ReadPosRankSum=-0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:55,23:78:99:284,0,1712
11    48367469    rs79686513    T    C    95.84    QDFilter2;SnpCluster    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=62;Dels=0.0;FS=10.103;HRun=0;HaplotypeScore=0.9995;MQ=53.24;MQ0=0;MQRankSum=-5.829;QD=1.55;ReadPosRankSum=0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:45,16:62:99:126,0,1479
11    48367470    rs80201516    G    A    96.77    QDFilter2;SnpCluster    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.014;DB;DP=60;Dels=0.0;FS=10.11;HRun=0;HaplotypeScore=0.9995;MQ=53.0;MQ0=0;MQRankSum=-5.686;QD=1.61;ReadPosRankSum=0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:44,16:60:99:127,0,1521
11    48367474    rs75116918    A    G    125.92    SnpCluster    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=0.096;DB;DP=58;Dels=0.0;FS=7.647;HRun=0;HaplotypeScore=0.9995;MQ=52.74;MQ0=0;MQRankSum=-5.663;QD=2.17;ReadPosRankSum=-0.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:42,16:58:99:156,0,1476
11    48367499    rs72896822    A    G    111.37    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.814;DB;DP=41;Dels=0.0;FS=2.496;HRun=1;HaplotypeScore=0.0;MQ=53.98;MQ0=0;MQRankSum=-4.308;QD=2.72;ReadPosRankSum=-0.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:32,9:41:99:141,0,1106
11    48367511    rs72896823    T    G    63.69    QDFilter2    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=2.142;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.99;MQ0=0;MQRankSum=-4.011;QD=1.93;ReadPosRankSum=-1.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:26,7:33:93.68:94,0,920
11    48373632    rs4882248    T    A    291.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:325,24,0
11    48373748    rs73453188    C    G    263.41    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.934;DB;DP=51;Dels=0.0;FS=1.311;HRun=0;HaplotypeScore=0.0;MQ=55.23;MQ0=0;MQRankSum=-3.165;QD=5.16;ReadPosRankSum=3.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:37,14:51:99:293,0,1179
11    48373770    rs73453191    T    A    301.54    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=0.332;DB;DP=55;Dels=0.0;FS=4.906;HRun=0;HaplotypeScore=0.0;MQ=54.68;MQ0=0;MQRankSum=-4.385;QD=5.48;ReadPosRankSum=1.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:39,16:55:99:332,0,1167
11    48373797    rs72896825    C    T    212.53    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.128;DB;DP=47;Dels=0.0;FS=7.516;HRun=0;HaplotypeScore=0.0;MQ=54.95;MQ0=0;MQRankSum=-4.56;QD=4.52;ReadPosRankSum=-1.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:36,11:47:99:243,0,1197
11    48373805    rs75618010    G    A    171.98    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.086;DB;DP=44;Dels=0.0;FS=5.794;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-4.075;QD=3.91;ReadPosRankSum=-2.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:34,10:44:99:202,0,1195
11    48373885    rs76292854    A    G    439.22    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.314;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6385;MQ=56.15;MQ0=0;MQRankSum=-1.424;QD=7.57;ReadPosRankSum=0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:37,21:58:99:469,0,1297
11    48373900    rs77877396    A    G    534.42    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.064;DB;DP=63;Dels=0.0;FS=2.4;HRun=0;HaplotypeScore=2.4458;MQ=56.08;MQ0=0;MQRankSum=-1.892;QD=8.48;ReadPosRankSum=-1.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:40,23:63:99:564,0,1458
11    48373936    rs76304554    A    G    514.80    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.654;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9385;MQ=58.2;MQ0=0;MQRankSum=-1.677;QD=6.6;ReadPosRankSum=1.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:53,24:78:99:545,0,1688
11    48373976    rs80225178    T    G    434.55    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.665;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8332;MQ=58.33;MQ0=0;MQRankSum=-1.115;QD=6.21;ReadPosRankSum=-1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:49,21:70:99:465,0,1533
11    48373986    rs12420054    A    G    374.34    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=1.587;DB;DP=65;Dels=0.0;FS=6.89;HRun=0;HaplotypeScore=1.6316;MQ=58.93;MQ0=0;MQRankSum=-0.245;QD=5.76;ReadPosRankSum=-0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:47,17:65:99:404,0,1477
11    48374000    rs112772888    C    CT    383.91    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=5.66;DB;DP=60;FS=0.0;HRun=5;HaplotypeScore=375.8948;IndelType=I;MQ=58.84;MQ0=0;MQRankSum=0.18;QD=6.4;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:45,15:60:99:423,0,1125
11    48374031    rs72896827    G    A    143.23    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.36;MQ0=0;MQRankSum=-0.433;QD=3.98;ReadPosRankSum=2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:28,8:36:99:173,0,1026
11    48374041    rs72896828    T    C    160.81    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.165;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.39;MQ0=0;MQRankSum=0.354;QD=5.55;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:20,9:29:99:191,0,738
11    48374072    rs78164721    C    T    93.66    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.667;QD=6.69;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:9,5:14:99:124,0,333
11    48386887    rs73460765    T    C    84.28    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.44;MQ0=0;MQRankSum=-0.597;QD=7.66;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:7,4:11:99:114,0,260
11    48386929    rs11822546    G    A    139.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.358;QD=7.77;ReadPosRankSum=0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:12,6:18:99:170,0,432
11    48386956    rs80059011    C    CA    554.66    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=37;FS=0.0;HRun=1;HaplotypeScore=110.9803;IndelType=I;MQ=53.75;MQ0=0;MQRankSum=-2.954;QD=14.99;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:22,15:37:99:594,0,812
11    48387098    rs77594589    A    C    553.47    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=3.475;DB;DP=123;Dels=0.0;FS=3.837;HRun=2;HaplotypeScore=0.9789;MQ=53.77;MQ0=0;MQRankSum=-7.422;QD=4.5;ReadPosRankSum=0.512;SNPEFF_AMINO_ACID_CHANGE=V307G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:89,34:123:99:583,0,2661
11    48387107    rs77606603    T    C    412.41    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=1.475;DB;DP=120;Dels=0.0;FS=4.079;HRun=0;HaplotypeScore=0.0;MQ=54.24;MQ0=0;MQRankSum=-7.045;QD=3.44;ReadPosRankSum=-0.15;SNPEFF_AMINO_ACID_CHANGE=N304S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:89,31:120:99:442,0,2885
11    48387115    rs75003399    G    A    278.04    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=0.918;DB;DP=122;Dels=0.0;FS=13.829;HRun=0;HaplotypeScore=0.8321;MQ=54.96;MQ0=0;MQRankSum=-7.0;QD=2.28;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=T301;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:94,28:122:99:308,0,3122
11    48387118    rs79339252    G    A    286.34    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=2.434;DB;DP=120;Dels=0.0;FS=12.112;HRun=0;HaplotypeScore=0.8321;MQ=54.88;MQ0=0;MQRankSum=-6.717;QD=2.39;ReadPosRankSum=-0.132;SNPEFF_AMINO_ACID_CHANGE=Y300;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:93,27:120:99:316,0,2871
11    48387164    rs72473371    G    A    73.54    QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.418;DB;DP=118;Dels=0.0;FS=35.948;HRun=1;HaplotypeScore=0.8321;MQ=54.36;MQ0=0;MQRankSum=-7.547;QD=0.62;ReadPosRankSum=-0.376;SNPEFF_AMINO_ACID_CHANGE=S285F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:92,26:118:99:104,0,3195
11    48387186    rs1994140    A    G    2774.45    PASS    AB=0.195;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.017;DB;DP=119;Dels=0.0;FS=28.737;HRun=2;HaplotypeScore=0.9469;MQ=54.87;MQ0=0;MQRankSum=7.335;QD=23.31;ReadPosRankSum=-0.079;SNPEFF_AMINO_ACID_CHANGE=F278L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:23,95:119:99:2804,0,113
11    48387201    rs77053100    G    A    164.58    QDFilter2;SnpCluster    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=106;Dels=0.0;FS=6.65;HRun=2;HaplotypeScore=2.1301;MQ=54.69;MQ0=0;MQRankSum=-7.159;QD=1.55;ReadPosRankSum=-0.641;SNPEFF_AMINO_ACID_CHANGE=R273*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:84,22:106:99:195,0,2550
11    48387206    rs76817095    T    C    48.62    QDFilter2;SnpCluster    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=105;Dels=0.0;FS=4.99;HRun=0;HaplotypeScore=2.1301;MQ=55.16;MQ0=0;MQRankSum=-6.916;QD=0.46;ReadPosRankSum=-0.063;SNPEFF_AMINO_ACID_CHANGE=Y271C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:84,20:105:78.62:79,0,2639
11    48387211    rs79985800    C    G    94.45    QDFilter2;SnpCluster    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.233;DB;DP=104;Dels=0.0;FS=2.225;HRun=0;HaplotypeScore=3.1284;MQ=55.35;MQ0=0;MQRankSum=-6.623;QD=0.91;ReadPosRankSum=0.417;SNPEFF_AMINO_ACID_CHANGE=L269F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:86,18:104:99:124,0,2878
11    48387237    rs72898877    C    T    50.81    QDFilter2    AB=0.874;AC=1;AF=0.50;AN=2;BaseQRankSum=2.347;DB;DP=96;Dels=0.0;FS=2.965;HRun=0;HaplotypeScore=0.9993;MQ=56.7;MQ0=0;MQRankSum=-5.585;QD=0.53;ReadPosRankSum=1.227;SNPEFF_AMINO_ACID_CHANGE=V261I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:83,12:96:80.81:81,0,2519
11    48387254    rs75441735    A    G    159.37    QDFilter2;SnpCluster    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=100;Dels=0.0;FS=13.567;HRun=2;HaplotypeScore=1.8737;MQ=55.86;MQ0=0;MQRankSum=-6.193;QD=1.59;ReadPosRankSum=-1.735;SNPEFF_AMINO_ACID_CHANGE=F255S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:83,17:100:99:189,0,2926
11    48387258    rs78030134    C    T    134.14    QDFilter2;SnpCluster    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=0.094;DB;DP=95;Dels=0.0;FS=11.276;HRun=0;HaplotypeScore=2.6077;MQ=55.63;MQ0=0;MQRankSum=-6.27;QD=1.41;ReadPosRankSum=-2.262;SNPEFF_AMINO_ACID_CHANGE=A254T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:79,16:95:99:164,0,2557
11    48387262    rs75430864    G    A    143.75    QDFilter2;SnpCluster    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=94;Dels=0.0;FS=11.41;HRun=1;HaplotypeScore=1.6498;MQ=55.84;MQ0=0;MQRankSum=-6.071;QD=1.53;ReadPosRankSum=-1.858;SNPEFF_AMINO_ACID_CHANGE=T252;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:79,15:94:99:174,0,2809
11    48387278    .    C    CACTGTCCTTCTGT    2067.14    PASS    AB=0.913;AC=1;AF=0.50;AN=2;BaseQRankSum=5.695;DP=84;FS=15.933;HRun=0;HaplotypeScore=1164.428;IndelType=I;MQ=55.92;MQ0=0;MQRankSum=-5.707;QD=24.61;ReadPosRankSum=-0.194;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:76,8:84:99:2106,0,8232
11    48387285    rs10839482    A    AGTCTTTAGTAG    2284.94    PASS    AB=0.915;AC=1;AF=0.50;AN=2;BaseQRankSum=6.054;DB;DP=86;FS=14.189;HRun=0;HaplotypeScore=1122.8404;IndelType=I;MQ=55.5;MQ0=0;MQRankSum=-6.066;QD=26.57;ReadPosRankSum=2.845;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:78,7:86:99:2324,0,7236
11    48387335    rs73460769    C    A    489.52    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=3.422;DB;DP=89;Dels=0.0;FS=12.725;HRun=1;HaplotypeScore=0.0;MQ=55.94;MQ0=0;MQRankSum=-2.036;QD=5.5;ReadPosRankSum=-0.034;SNPEFF_AMINO_ACID_CHANGE=C228F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:63,26:89:99:520,0,1993
11    48387370    rs73460772    A    G    1108.85    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.598;DB;DP=110;Dels=0.0;FS=10.803;HRun=0;HaplotypeScore=2.4896;MQ=54.48;MQ0=0;MQRankSum=-1.828;QD=10.08;ReadPosRankSum=0.333;SNPEFF_AMINO_ACID_CHANGE=F216;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:62,48:110:99:1139,0,1993
11    48387424    rs61917478    G    T    1604.75    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.968;DB;DP=128;Dels=0.0;FS=6.74;HRun=1;HaplotypeScore=1.8055;MQ=53.1;MQ0=0;MQRankSum=-4.213;QD=12.54;ReadPosRankSum=-0.778;SNPEFF_AMINO_ACID_CHANGE=F198L;SNPEFF_CODON_CHANGE=ttC/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:63,65:128:99:1635,0,1990
11    48387490    rs77144540    G    A    1031.01    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=6.364;DB;DP=120;Dels=0.0;FS=18.283;HRun=0;HaplotypeScore=4.3799;MQ=52.21;MQ0=0;MQRankSum=-5.311;QD=8.59;ReadPosRankSum=-0.884;SNPEFF_AMINO_ACID_CHANGE=H176;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:71,49:120:99:1061,0,1995
11    48387506    rs72898882    A    G    715.32    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=3.307;DB;DP=119;Dels=0.0;FS=34.235;HRun=1;HaplotypeScore=0.0;MQ=53.37;MQ0=0;MQRankSum=-6.105;QD=6.01;ReadPosRankSum=1.526;SNPEFF_AMINO_ACID_CHANGE=V171A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:79,40:119:99:745,0,2323
11    48387526    rs78378263    G    T    446.18    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.124;DB;DP=117;Dels=0.0;FS=43.996;HRun=0;HaplotypeScore=0.0;MQ=53.25;MQ0=0;MQRankSum=-6.185;QD=3.81;ReadPosRankSum=1.012;SNPEFF_AMINO_ACID_CHANGE=L164;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:81,36:117:99:476,0,2666
11    48387535    rs72898883    T    C    372.10    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.92;DB;DP=117;Dels=0.0;FS=57.832;HRun=0;HaplotypeScore=0.9947;MQ=53.03;MQ0=0;MQRankSum=-7.296;QD=3.18;ReadPosRankSum=-0.253;SNPEFF_AMINO_ACID_CHANGE=V161;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:81,35:117:99:402,0,2613
11    48387540    rs72898885    G    T    386.07    FSFilter60    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=112;Dels=0.0;FS=67.851;HRun=1;HaplotypeScore=0.9947;MQ=52.7;MQ0=0;MQRankSum=-6.784;QD=3.45;ReadPosRankSum=-1.379;SNPEFF_AMINO_ACID_CHANGE=Q160K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:77,34:112:99:416,0,2556
11    48387580    rs78299098    G    T    65.14    QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=1.341;DB;DP=115;Dels=0.0;FS=35.438;HRun=1;HaplotypeScore=3.2332;MQ=55.68;MQ0=0;MQRankSum=-6.745;QD=0.56;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=A146;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:96,19:115:95.14:95,0,2938
11    48387582    rs75027745    C    T    53.27    QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=115;Dels=0.0;FS=33.246;HRun=0;HaplotypeScore=2.2337;MQ=55.64;MQ0=0;MQRankSum=-6.799;QD=0.46;ReadPosRankSum=0.14;SNPEFF_AMINO_ACID_CHANGE=A146T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:96,19:115:83.27:83,0,2984
11    48387604    rs72898886    C    T    55.31    QDFilter2    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.963;DB;DP=113;Dels=0.0;FS=25.78;HRun=1;HaplotypeScore=3.2419;MQ=55.34;MQ0=0;MQRankSum=-6.978;QD=0.49;ReadPosRankSum=-1.201;SNPEFF_AMINO_ACID_CHANGE=V138;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:93,20:113:85.31:85,0,2978
11    48387630    rs73460777    C    T    69.21    QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.866;DB;DP=114;Dels=0.0;FS=6.957;HRun=0;HaplotypeScore=4.3684;MQ=54.73;MQ0=0;MQRankSum=-7.23;QD=0.61;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=G130R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:90,22:114:99:99,0,2976
11    48387647    rs75615667    A    G    160.04    QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=5.471;DB;DP=118;Dels=0.0;FS=4.238;HRun=0;HaplotypeScore=0.0;MQ=55.38;MQ0=0;MQRankSum=-6.783;QD=1.36;ReadPosRankSum=1.405;SNPEFF_AMINO_ACID_CHANGE=V124A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:97,21:118:99:190,0,3044
11    48387679    rs76209049    A    G    118.08    HaplotypeScoreFilter13;QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=1.351;DB;DP=102;Dels=0.0;FS=1.389;HRun=0;HaplotypeScore=19.0332;MQ=55.06;MQ0=0;MQRankSum=-5.835;QD=1.16;ReadPosRankSum=0.022;SNPEFF_AMINO_ACID_CHANGE=I113;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:83,19:102:99:148,0,2646
11    48387683    rs67755516    GT    G    163.71    QDFilter2    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=6.416;DB;DP=100;FS=1.492;HRun=4;HaplotypeScore=561.1349;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=-5.482;QD=1.64;ReadPosRankSum=0.134;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:86,14:100:99:203,0,2909
11    48387705    rs34926479    C    T    199.05    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.202;DB;DP=97;Dels=0.0;FS=5.111;HRun=1;HaplotypeScore=0.0;MQ=56.03;MQ0=0;MQRankSum=-5.058;QD=2.05;ReadPosRankSum=-0.745;SNPEFF_AMINO_ACID_CHANGE=D105N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:78,19:97:99:229,0,2568
11    48387737    rs73460780    G    C    226.04    PASS    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.17;DB;DP=91;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.0;MQ=55.48;MQ0=0;MQRankSum=-5.756;QD=2.48;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=S94C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:73,18:91:99:256,0,2410
11    48387757    rs74557904    A    C    263.06    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.509;DB;DP=89;Dels=0.0;FS=3.23;HRun=0;HaplotypeScore=0.9983;MQ=54.7;MQ0=0;MQRankSum=-6.229;QD=2.96;ReadPosRankSum=1.004;SNPEFF_AMINO_ACID_CHANGE=F87L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:69,20:89:99:293,0,2281
11    48387780    rs76329018    C    T    344.55    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=3.693;DB;DP=91;Dels=0.0;FS=2.937;HRun=0;HaplotypeScore=0.0;MQ=53.08;MQ0=0;MQRankSum=-6.31;QD=3.79;ReadPosRankSum=0.125;SNPEFF_AMINO_ACID_CHANGE=V80M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:65,25:91:99:375,0,2027
11    48387789    rs80222485    C    G    239.60    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=84;Dels=0.0;FS=1.424;HRun=0;HaplotypeScore=0.0;MQ=53.58;MQ0=0;MQRankSum=-6.288;QD=2.85;ReadPosRankSum=0.91;SNPEFF_AMINO_ACID_CHANGE=D77H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:63,21:84:99:270,0,2026
11    48387825    rs75650204    T    G    158.33    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=65;Dels=0.0;FS=10.231;HRun=0;HaplotypeScore=0.0;MQ=53.49;MQ0=0;MQRankSum=-5.688;QD=2.44;ReadPosRankSum=0.632;SNPEFF_AMINO_ACID_CHANGE=I65L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:49,16:65:99:188,0,1799
11    48387833    rs79515387    T    C    118.30    QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=2.416;DB;DP=66;Dels=0.0;FS=8.029;HRun=1;HaplotypeScore=0.0;MQ=53.6;MQ0=0;MQRankSum=-5.364;QD=1.79;ReadPosRankSum=0.501;SNPEFF_AMINO_ACID_CHANGE=D62G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:50,16:66:99:148,0,1734
11    48387850    rs73460781    G    T    77.31    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.828;DB;DP=70;Dels=0.0;FS=6.931;HRun=1;HaplotypeScore=1.445;MQ=54.04;MQ0=0;MQRankSum=-5.737;QD=1.1;ReadPosRankSum=0.589;SNPEFF_AMINO_ACID_CHANGE=Y56*;SNPEFF_CODON_CHANGE=taC/taA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:55,15:70:99:107,0,1890
11    48387890    rs74623688    T    C    31.66    QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=0.542;DB;DP=73;Dels=0.0;FS=1.912;HRun=2;HaplotypeScore=3.0753;MQ=54.85;MQ0=0;MQRankSum=-5.622;QD=0.43;ReadPosRankSum=-0.381;SNPEFF_AMINO_ACID_CHANGE=E43G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:59,14:73:61.65:62,0,1910
11    48387900    rs74338058    G    A    50.29    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.402;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6648;MQ=54.0;MQ0=0;MQRankSum=-5.923;QD=0.7;ReadPosRankSum=-1.106;SNPEFF_AMINO_ACID_CHANGE=Q40*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:56,16:72:80.29:80,0,1923
11    48387917    rs66829866    AT    A    483.93    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=6.661;DB;DP=80;FS=0.0;HRun=1;HaplotypeScore=698.4598;IndelType=D;MQ=53.16;MQ0=0;MQRankSum=-6.672;QD=6.05;ReadPosRankSum=-0.55;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:61,19:80:99:523,0,2617
11    48387930    rs75939575    T    C    111.76    QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.008;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=53.8;MQ0=0;MQRankSum=-6.595;QD=1.35;ReadPosRankSum=0.493;SNPEFF_AMINO_ACID_CHANGE=I30V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:64,19:83:99:142,0,2150
11    48387945    .    C    CCA    473.89    PASS    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=5.658;DP=82;FS=1.842;HRun=0;HaplotypeScore=590.0188;IndelType=I;MQ=55.45;MQ0=0;MQRankSum=-5.671;QD=5.78;ReadPosRankSum=3.848;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:69,13:82:99:513,0,2896
11    48387960    rs79688019    T    C    109.90    QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=3.612;DB;DP=80;Dels=0.0;FS=1.508;HRun=0;HaplotypeScore=2.694;MQ=55.02;MQ0=0;MQRankSum=-6.015;QD=1.37;ReadPosRankSum=-1.208;SNPEFF_AMINO_ACID_CHANGE=T20A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:65,15:80:99:140,0,2065
11    48387978    rs78160589    T    A    136.46    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.618;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.58;MQ0=0;MQRankSum=-6.164;QD=1.71;ReadPosRankSum=-2.736;SNPEFF_AMINO_ACID_CHANGE=K14*;SNPEFF_CODON_CHANGE=Aaa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:64,16:80:99:166,0,2136
11    48387983    rs75819836    T    C    167.06    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.81;DB;DP=76;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=0.0;MQ=54.35;MQ0=0;MQRankSum=-6.122;QD=2.2;ReadPosRankSum=-2.962;SNPEFF_AMINO_ACID_CHANGE=H12R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48387037_48388017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319813    GT:AD:DP:GQ:PL    0/1:60,16:76:99:197,0,2025
11    48388047    rs75982328    T    C    128.25    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.542;DB;DP=46;Dels=0.0;FS=11.998;HRun=0;HaplotypeScore=0.7887;MQ=52.31;MQ0=0;MQRankSum=-5.221;QD=2.79;ReadPosRankSum=-0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:33,13:46:99:158,0,1116
11    48388049    rs77697332    A    G    134.27    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=42;Dels=0.0;FS=8.344;HRun=0;HaplotypeScore=1.7356;MQ=52.15;MQ0=0;MQRankSum=-5.0;QD=3.2;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:30,12:42:99:164,0,1014
11    48388067    rs73460782    G    A    65.86    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.008;DB;DP=29;Dels=0.0;FS=15.119;HRun=0;HaplotypeScore=2.6297;MQ=53.81;MQ0=0;MQRankSum=-3.926;QD=2.27;ReadPosRankSum=-1.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:21,7:29:95.85:96,0,798
11    48388641    rs80267937    G    A    54.81    QDFilter2    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.7;DB;DP=102;Dels=0.0;FS=29.546;HRun=2;HaplotypeScore=2.9996;MQ=56.33;MQ0=0;MQRankSum=-5.919;QD=0.54;ReadPosRankSum=-3.578;SNPEFF_AMINO_ACID_CHANGE=K192;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48388618_48388665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:84,16:102:84.80:85,0,2726
11    48388657    rs80000751    G    A    88.19    QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=108;Dels=0.0;FS=4.248;HRun=1;HaplotypeScore=0.9999;MQ=56.54;MQ0=0;MQRankSum=-6.046;QD=0.82;ReadPosRankSum=-2.595;SNPEFF_AMINO_ACID_CHANGE=D198N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48388618_48388665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:91,17:108:99:118,0,2750
11    48388681    rs76712816    G    A    156.27    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=92;Dels=0.0;FS=3.041;HRun=1;HaplotypeScore=1.4972;MQ=56.71;MQ0=0;MQRankSum=-4.406;QD=1.7;ReadPosRankSum=1.905;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:75,15:92:99:186,0,2426
11    48388698    rs77483743    C    T    209.78    PASS    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=81;Dels=0.01;FS=5.361;HRun=1;HaplotypeScore=2.8489;MQ=56.0;MQ0=0;MQRankSum=-3.968;QD=2.56;ReadPosRankSum=2.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:65,16:81:99:240,0,2090
11    48388717    rs78132200    T    C    308.22    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.997;DB;DP=68;Dels=0.0;FS=3.947;HRun=1;HaplotypeScore=3.4273;MQ=54.4;MQ0=0;MQRankSum=-3.869;QD=4.53;ReadPosRankSum=0.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:49,19:68:99:338,0,1620
11    48388782    rs76039310    A    G    213.38    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.894;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.87;MQ0=0;MQRankSum=-3.16;QD=8.89;ReadPosRankSum=-0.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:15,9:24:99:243,0,542
11    48388833    rs73460789    A    C    43.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.28;MQ0=0;MQRankSum=-1.754;QD=6.2;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395239    GT:AD:DP:GQ:PL    0/1:4,3:7:73.37:73,0,144
11    48441874    rs4882060    G    C    2255.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530855    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2288,169,0
11    48453787    rs4882063    G    A    1345.54    PASS    AB=0.137;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.662;DB;DP=51;Dels=0.0;FS=5.188;HRun=0;HaplotypeScore=1.3302;MQ=52.69;MQ0=1;MQRankSum=3.858;QD=26.38;ReadPosRankSum=0.412;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4C10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434991    GT:AD:DP:GQ:PL    0/1:7,44:51:8.01:1375,0,8
11    48510654    rs7103557    A    C    1700.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.4;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=59.06;MQ0=0;MQRankSum=-0.2;QD=32.09;ReadPosRankSum=-1.066;SNPEFF_AMINO_ACID_CHANGE=I104L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48510269_48511332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4A47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446524    GT:AD:DP:GQ:PL    1/1:1,51:53:90.68:1734,91,0
11    48510777    rs7103992    G    A    1682.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=38.24;SNPEFF_AMINO_ACID_CHANGE=V145M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_48510269_48511332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4A47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446524    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1715,129,0
11    48923085    rs7106962    T    C    182.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.51;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534243    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:215,18,0
11    48923643    rs71493091    C    G    233.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534243    GT:AD:DP:GQ:PL    1/1:0,8:9:21.04:267,21,0
11    48923650    rs7358474    G    T    248.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534243    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
11    48930459    rs144193070    A    G    394.13    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=39;Dels=0.0;FS=2.026;HRun=0;HaplotypeScore=0.0;MQ=41.3;MQ0=0;MQRankSum=-0.541;QD=10.11;ReadPosRankSum=1.253;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533838    GT:AD:DP:GQ:PL    0/1:23,16:39:99:424,0,664
11    48930487    rs10769516    G    T    783.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.65;MQ0=0;QD=29.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533838    GT:AD:DP:GQ:PL    1/1:0,27:27:72.17:816,72,0
11    48967424    rs1857786    G    A    4514.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.83;MQ0=0;QD=33.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505076    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4515,328,0
11    48968339    rs1827726    A    C    4249.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=50.5;MQ0=0;QD=32.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505076    GT:AD:DP:GQ:PL    1/1:0,129:129:99:4250,322,0
11    48968497    rs11040172    A    T    2969.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=57.48;MQ0=0;QD=30.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505076    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3002,250,0
11    48969944    rs3850930    A    G    4903.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=240;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=27.61;MQ0=31;QD=20.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505076    GT:AD:DP:GQ:PL    1/1:0,238:240:99:4903,465,0
11    48970032    rs1965373    G    A    5113.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=201;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6671;MQ=36.26;MQ0=16;QD=25.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505076    GT:AD:DP:GQ:PL    1/1:4,197:201:99:5113,442,0
11    48970095    rs1964684    G    A    3796.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=44.01;MQ0=3;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544390    GT:AD:DP:GQ:PL    1/1:0,124:124:99:3797,307,0
11    48970887    rs12787989    G    T    1952.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.19;MQ0=0;QD=34.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544390    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1986,156,0
11    48971019    .    C    CAAAT    444.87    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DP=23;FS=0.0;HRun=0;HaplotypeScore=82.6838;IndelType=I;MQ=49.92;MQ0=0;MQRankSum=-0.747;QD=18.54;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544390    GT:AD:DP:GQ:PL    0/1:16,8:23:24.41:484,0,24
11    48971082    rs11040175    G    A    1203.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.65;MQ0=0;QD=36.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544390    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1237,93,0
11    48971280    rs7122794    A    G    647.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;QD=38.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544390    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:680,51,0
11    48971454    rs11040176    A    T    373.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544390    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:406,30,0
11    48972984    rs2865918    T    A    4054.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.07;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544390    GT:AD:DP:GQ:PL    1/1:0,115:115:99:4054,301,0
11    48973021    rs1847650    G    A    5671.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=58.63;MQ0=0;QD=33.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544390    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5672,418,0
11    48973460    rs10839195    C    T    2801.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505076    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2835,211,0
11    48973477    rs10839196    G    A    2215.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505076    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2249,181,0
11    48973621    rs1847651    A    T    132.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.11;MQ0=0;QD=22.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505076    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:165,12,0
11    48982487    rs4929866    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.74;MQ0=4;QD=5.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528030    GT:AD:DP:GQ:PL    1/1:4,2:6:6.02:67,6,0
11    48982504    rs60971573    C    T    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.76;MQ0=5;QD=8.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528030    GT:AD:DP:GQ:PL    1/1:5,3:8:9.02:100,9,0
11    48982799    rs10742922    C    G    241.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=34.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528030    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
11    48982860    rs10769545    C    T    201.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.41;MQ0=0;QD=25.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528030    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:234,18,0
11    48997592    rs1813231    C    T    615.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:648,48,0
11    48998939    rs3862339    T    C    260.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.48;MQ0=0;QD=32.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:294,24,0
11    48999287    .    C    T    413.18    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.604;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.31;MQ0=0;MQRankSum=0.328;QD=12.15;ReadPosRankSum=1.018;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    0/1:18,16:34:99:443,0,609
11    48999318    rs10769551    T    G    1086.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=1.636;QD=30.17;ReadPosRankSum=0.578;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:1,35:36:53.85:1119,54,0
11    48999327    rs1847636    T    C    1032.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.549;DB;DP=41;Dels=0.0;FS=3.233;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=1.648;QD=25.18;ReadPosRankSum=0.718;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:1,40:41:53.82:1065,54,0
11    48999450    rs145431105    TTTTA    T    982.47    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.354;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=216.0949;IndelType=D;MQ=60.47;MQ0=0;MQRankSum=2.254;QD=33.88;ReadPosRankSum=2.053;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    0/1:6,23:29:3.60:1021,0,4
11    48999520    rs77129591    T    A    481.34    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=3.056;DB;DP=131;Dels=0.0;FS=4.705;HRun=4;HaplotypeScore=1.8332;MQ=54.97;MQ0=4;MQRankSum=-6.295;QD=3.67;ReadPosRankSum=1.812;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    0/1:99,32:131:99:511,0,3032
11    48999527    rs1505217    G    C    3134.08    PASS    AB=0.243;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=137;Dels=0.0;FS=4.479;HRun=0;HaplotypeScore=1.7552;MQ=55.01;MQ0=4;MQRankSum=6.21;QD=22.88;ReadPosRankSum=-1.698;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    0/1:33,103:137:99:3164,0,536
11    48999610    .    C    A    51.76    QDFilter2    AB=0.894;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.841;DP=132;Dels=0.0;FS=24.835;HRun=1;HaplotypeScore=0.7887;MQ=56.66;MQ0=2;MQRankSum=-5.626;QD=0.39;ReadPosRankSum=-0.165;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    0/1:118,14:132:81.75:82,0,3812
11    49000305    rs4335550    A    C    1941.49    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=41.5599;MQ=58.18;MQ0=0;QD=34.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1974,153,0
11    49000313    rs111289946    GT    G    1793.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=5;HaplotypeScore=379.9807;IndelType=D;MQ=58.03;MQ0=0;QD=30.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:3,55:58:99:1835,162,0
11    49000423    rs1965370    C    G    5632.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.73;MQ0=0;QD=34.99;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:0,161:161:99:5633,430,0
11    49000522    rs1963629    C    T    8081.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=244;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.2064;MQ=58.35;MQ0=0;QD=33.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:0,244:244:99:8082,611,0
11    49000754    rs1027750    G    A    1821.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.22;MQ0=2;QD=31.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1855,150,0
11    49002343    rs9783302    T    G    663.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=34.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534741    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:697,54,0
11    49002743    rs1847637    G    A    1876.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=58.7;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1909,147,0
11    49003284    rs7938967    T    G    6281.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=196;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.7318;MQ=55.33;MQ0=0;QD=32.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:0,196:196:99:6282,500,0
11    49003521    rs11040200    G    A    210.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=35.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
11    49007657    rs4116128    C    T    2643.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=35.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2677,211,0
11    49007698    rs1910835    A    T    2781.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.08;MQ0=1;QD=33.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2815,211,0
11    49007945    rs10679755    G    GAGAA    672.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=34.5754;IndelType=I;MQ=24.43;MQ0=2;QD=51.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:1,12:11:30.10:714,30,0
11    49010675    rs3974940    T    C    3391.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.99;MQ0=1;QD=32.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3392,277,0
11    49012833    rs1827724    G    A    596.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=52.46;MQ0=0;QD=31.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:1,18:19:51.15:630,51,0
11    49013054    rs2021248    C    T    4632.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;DB;DP=132;Dels=0.0;FS=3.946;HRun=0;HaplotypeScore=2.7545;MQ=58.83;MQ0=0;MQRankSum=0.489;QD=35.09;ReadPosRankSum=0.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:1,131:132:99:4632,312,0
11    49013161    rs1827725    T    C    4828    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.53;MQ0=0;QD=37.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4828,370,0
11    49013282    rs1910837    T    C    4479.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.1387;MQ=53.08;MQ0=0;QD=32.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:0,137:138:99:4480,349,0
11    49013308    rs1910838    C    G    5379.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7742;MQ=53.98;MQ0=0;QD=34.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531490    GT:AD:DP:GQ:PL    1/1:1,155:156:99:5380,409,0
11    49032445    rs56080733    G    C    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534734    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
11    49033176    rs6485946    G    A    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=20.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534734    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    49035068    rs2135115    A    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534734    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    49035854    rs10742926    T    G    487.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.39;MQ0=1;QD=30.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534734    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:520,42,0
11    49036039    rs10839211    G    A    1056.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.625;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.39;MQ0=1;MQRankSum=-0.758;QD=30.19;ReadPosRankSum=-0.866;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534734    GT:AD:DP:GQ:PL    1/1:1,33:35:51.04:1090,51,0
11    49036122    rs66845590    TC    T    1063.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=5;HaplotypeScore=96.4578;IndelType=D;MQ=47.79;MQ0=0;QD=28.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-56P9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534734    GT:AD:DP:GQ:PL    1/1:7,30:34:99:1106,102,0
11    49053601    rs2696923    A    G    2584.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332682    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2618,190,0
11    49054028    rs142052048    TA    T    369.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=10;HaplotypeScore=46.6554;IndelType=D;MQ=41.45;MQ0=0;QD=19.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332682    GT:AD:DP:GQ:PL    1/1:3,16:19:47.97:411,48,0
11    49055427    rs2696919    A    G    131.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.47;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332682    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
11    49055751    rs2727042    T    C    6520.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=209;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.24;MQ0=0;QD=31.2;SNPEFF_AMINO_ACID_CHANGE=P187;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_49055698_49055928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084851.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332682    GT:AD:DP:GQ:PL    1/1:0,209:209:99:6521,535,0
11    49056372    rs2696918    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332682    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    49056627    rs66469031    C    CT    1038.36    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.586;DB;DP=112;FS=13.868;HRun=16;HaplotypeScore=713.8349;IndelType=I;MQ=50.59;MQ0=0;MQRankSum=-0.349;QD=8.65;ReadPosRankSum=-0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332682    GT:AD:DP:GQ:PL    0/1:64,43:112:27.29:1077,0,27
11    49058871    rs2696915    C    T    103.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084851.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332682    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
11    49059362    rs2696914    C    A    2950.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.891;MQ=40.97;MQ0=14;QD=25.0;SNPEFF_AMINO_ACID_CHANGE=L398M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_49059030_49059579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC084851.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332682    GT:AD:DP:GQ:PL    1/1:0,118:118:99:2983,255,0
11    49075605    rs2851535    G    A    3669.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.73;MQ0=0;QD=35.98;SNPEFF_AMINO_ACID_CHANGE=S335;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_49075266_49075759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM64C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530230    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3670,271,0
11    49076560    rs2773241    T    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM64C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530230    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    49076963    rs113758795    C    CAA    2006.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=10;HaplotypeScore=303.0221;IndelType=I;MQ=58.41;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM64C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530230    GT:AD:DP:GQ:PL    1/1:6,46:53:99:2049,143,0
11    49077012    rs2773242    C    T    913.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=30.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM64C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530230    GT:AD:DP:GQ:PL    1/1:0,30:30:72.21:947,72,0
11    49077746    rs7949585    G    T    555.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM64C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530230    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:589,45,0
11    49077889    rs111951921    AT    A    2650.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;FS=0.0;HRun=8;HaplotypeScore=263.9774;IndelType=D;MQ=60.18;MQ0=0;QD=27.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM64C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530230    GT:AD:DP:GQ:PL    1/1:2,95:97:99:2692,279,0
11    49080616    rs60452246    T    C    1488.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.399;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=57.39;MQ0=0;MQRankSum=-1.599;QD=26.57;ReadPosRankSum=-0.2;SNPEFF_AMINO_ACID_CHANGE=I17V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_49080253_49080664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM64C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530230    GT:AD:DP:GQ:PL    1/1:1,55:56:90.12:1521,90,0
11    49080677    rs34947092    T    TA    276.30    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=25;FS=6.532;HRun=14;HaplotypeScore=184.2781;IndelType=I;MQ=58.52;MQ0=0;MQRankSum=-1.115;QD=11.05;ReadPosRankSum=-1.009;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM64C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530230    GT:AD:DP:GQ:PL    0/1:11,14:25:19.41:315,0,19
11    49103690    rs2727015    G    T    4477.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=36.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=UBTFL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418789    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4477,331,0
11    49104677    rs111997628    GT    G    502.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DB;DP=44;FS=0.0;HRun=14;HaplotypeScore=177.1916;IndelType=D;MQ=53.71;MQ0=1;MQRankSum=0.113;QD=11.16;ReadPosRankSum=-1.999;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=UBTFL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418789    GT:AD:DP:GQ:PL    1/1:13,31:44:39.28:544,39,0
11    49170334    rs202694    T    C    580.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.39;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256999    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:614,48,0
11    49176057    rs2988340    C    T    914.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.19;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389724    GT:AD:DP:GQ:PL    1/1:0,28:29:72.23:947,72,0
11    49192667    rs10839236    C    T    623.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.37;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256999    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:657,51,0
11    49192905    rs34828796    GA    G    59.70    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=14;FS=0.0;HRun=16;HaplotypeScore=79.9965;IndelType=D;MQ=38.26;MQ0=0;MQRankSum=0.067;QD=3.98;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256999    GT:AD:DP:GQ:PL    0/1:7,8:14:22.86:99,0,23
11    49195090    rs202718    T    C    841.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.55;MQ0=1;QD=24.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256999    GT:AD:DP:GQ:PL    1/1:0,34:34:75.21:874,75,0
11    49195127    .    C    CA    86.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=12;FS=0.0;HRun=1;HaplotypeScore=138.1055;IndelType=I;MQ=40.42;MQ0=0;MQRankSum=-0.747;QD=5.07;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256999    GT:AD:DP:GQ:PL    1/1:10,6:12:18.90:128,19,0
11    49196652    rs202715    C    T    332.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOLH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256999    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
11    49329552    rs1164670    G    A    2530.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.84;MQ0=2;QD=31.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2026G22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529674    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2563,208,0
11    49356400    rs67850822    GT    G    186.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=68.5278;IndelType=D;MQ=56.0;MQ0=0;QD=10.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2026G22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529674    GT:AD:DP:GQ:PL    1/1:4,10:16:37.86:229,38,0
11    49372872    rs3915110    G    A    230.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.14;MQ0=0;QD=25.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2026G22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529674    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:264,21,0
11    49385596    rs10839269    A    G    1329.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.32;MQ0=0;QD=30.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2026G22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529674    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1363,102,0
11    49400823    rs3892612    A    G    281.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.07;MQ0=0;QD=31.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2026G22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529081    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:314,27,0
11    49400965    rs3974576    T    C    1526    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.16;MQ0=0;QD=37.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2026G22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529081    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1559,114,0
11    49401125    rs7102702    T    G    1155.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2026G22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529674    GT:AD:DP:GQ:PL    1/1:0,29:29:87.29:1189,87,0
11    49597799    rs7131345    C    T    2008.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.27;MQ0=0;QD=32.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527477    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2041,153,0
11    49598178    rs7101761    G    A    2542.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.6;MQ0=0;QD=34.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    1/1:0,73:74:99:2576,202,0
11    49598207    rs3750925    T    C    2456.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.219;DB;DP=81;Dels=0.0;FS=3.239;HRun=1;HaplotypeScore=0.8321;MQ=52.18;MQ0=0;MQRankSum=-0.064;QD=30.33;ReadPosRankSum=0.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    1/1:1,80:81:99:2490,165,0
11    49598209    rs7939515    T    C    2446.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=51.79;MQ0=0;QD=29.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    1/1:0,82:83:99:2479,205,0
11    49637416    rs7125677    A    G    518.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.74;MQ0=1;QD=30.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:552,42,0
11    49655814    rs144145381    T    C    127.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.15;MQ0=0;QD=4.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    1/1:0,27:27:15.03:160,15,0
11    49729299    rs67084465    AC    A    1575.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;DB;DP=57;FS=0.0;HRun=4;HaplotypeScore=147.888;IndelType=D;MQ=56.45;MQ0=3;MQRankSum=2.786;QD=26.26;ReadPosRankSum=-0.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    1/1:10,50:57:33.44:1618,33,0
11    49805801    rs118040165    C    T    235.64    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=3.73;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.267;QD=11.22;ReadPosRankSum=1.267;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    0/1:13,8:21:99:266,0,374
11    49831602    rs34205352    AG    A    5612.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;FS=0.0;HRun=1;HaplotypeScore=361.6018;IndelType=D;MQ=58.81;MQ0=0;QD=40.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    1/1:0,138:138:99:5612,403,0
11    49831862    rs10839383    G    A    3582.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=58.48;MQ0=0;QD=37.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-707M1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357667    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3583,271,0
11    49846274    rs10839395    G    T    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=13.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526407    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
11    49846334    rs72412692    AAGCC    A    506.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=74.023;IndelType=D;MQ=51.3;MQ0=0;QD=38.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526407    GT:AD:DP:GQ:PL    1/1:2,11:13:33.11:549,33,0
11    49846626    rs6486028    A    G    1522.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.07;MQ0=0;QD=34.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526407    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1555,123,0
11    49847299    rs4576806    A    G    247.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532682    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
11    49854707    rs1829951    A    C    7327.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.467;DB;DP=221;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=58.65;MQ0=0;MQRankSum=-0.229;QD=33.16;ReadPosRankSum=0.293;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:1,220:221:99:7328,521,0
11    49856288    rs3855767    A    C    1548.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.72;MQ0=5;QD=28.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1581,138,0
11    49856812    rs1818889    T    C    381.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=38.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:415,30,0
11    49856882    rs1818890    T    C    1667.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=36.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1701,126,0
11    49857074    rs10839397    C    T    1422.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=36.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1455,114,0
11    49857331    rs34414791    T    TA    1640.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.231;DB;DP=88;FS=1.905;HRun=13;HaplotypeScore=282.5567;IndelType=I;MQ=58.47;MQ0=0;MQRankSum=0.456;QD=18.23;ReadPosRankSum=-0.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:19,70:88:99:1683,107,0
11    49858158    rs3861057    A    G    6352.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=236;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.575;MQ=37.49;MQ0=13;QD=26.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:0,235:236:99:6353,526,0
11    49858432    rs11040586    T    A    884.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:918,69,0
11    49859661    rs1829946    A    G    5863.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.61;MQ0=4;QD=32.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:1,180:181:99:5864,454,0
11    49859855    rs3849979    T    C    1756.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.11;MQ0=1;QD=38.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1790,135,0
11    49860405    rs1851859    A    T    2485.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.27;MQ0=0;QD=33.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-707M1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526452    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2519,196,0
11    49872417    rs10839399    C    T    735.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.95;MQ0=0;QD=29.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532033    GT:AD:DP:GQ:PL    1/1:0,24:25:63.18:769,63,0
11    49880837    rs28430344    A    C    122.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.5;MQ0=0;MQRankSum=-0.336;QD=11.17;ReadPosRankSum=-0.336;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532033    GT:AD:DP:GQ:PL    0/1:6,5:11:99:153,0,154
11    49881026    rs10128606    C    G    568.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.88;MQ0=0;QD=33.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534129    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:602,45,0
11    49881196    rs10128617    C    T    1523.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.46;MQ0=0;QD=31.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534129    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1557,114,0
11    49893165    rs1722021    G    T    384.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=36.46;MQ0=0;QD=27.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:417,36,0
11    49893178    .    T    G    67.96    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.345;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.97;MQ0=0;MQRankSum=-3.204;QD=3.09;ReadPosRankSum=3.274;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    0/1:10,12:22:97.95:98,0,308
11    49893590    rs11040609    G    A    5176.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.48;MQ0=2;QD=32.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:1,157:158:99:5176,391,0
11    49893801    rs7481670    T    G    363.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=36.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:397,30,0
11    49895896    rs1722003    G    A    1112.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.33;MQ0=1;QD=27.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1146,99,0
11    49895909    rs12271640    T    C    1135.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.16;MQ0=4;QD=23.66;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1169,105,0
11    49896303    rs61904506    T    C    94.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.85;MQ0=4;QD=10.49;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:4,5:9:12:127,12,0
11    49896308    rs28558167    G    T    158.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.19;MQ0=4;QD=14.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:4,7:11:18:191,18,0
11    49896646    rs1722004    A    G    473.60    MQFilter40    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=34;Dels=0.0;FS=2.764;HRun=1;HaplotypeScore=0.0;MQ=33.81;MQ0=1;MQRankSum=-0.251;QD=13.93;ReadPosRankSum=-0.796;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    0/1:10,24:34:99:504,0,225
11    49896717    rs28535827    T    C    195.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.85;MQ0=1;QD=21.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:228,21,0
11    49897543    rs12793005    G    C    259.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.19;MQ0=0;QD=37.02;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
11    49897676    rs1722008    A    T    1088.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=55.72;MQ0=0;QD=25.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526053    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1122,105,0
11    49897892    rs1794159    G    A    5347.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=39.77;MQ0=9;QD=29.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529746    GT:AD:DP:GQ:PL    1/1:0,180:181:99:5348,436,0
11    49897958    rs1722010    A    G    3027.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=25.23;MQ0=14;QD=23.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529746    GT:AD:DP:GQ:PL    1/1:0,130:130:99:3061,283,0
11    49898034    rs1794160    T    C    4700.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=40.94;MQ0=20;QD=29.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529746    GT:AD:DP:GQ:PL    1/1:7,154:161:99:4701,385,0
11    49898355    rs11040613    T    C    486.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.13;MQ0=0;QD=30.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-163O19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529746    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:519,45,0
11    49915027    rs4881654    C    T    358.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.51;MQ0=0;QD=21.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4A1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532342    GT:AD:DP:GQ:PL    1/1:0,17:17:33.05:391,33,0
11    49942580    rs12364337    A    T    789.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4A19P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533579    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:822,60,0
11    49974371    rs28662375    G    A    1929.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.08;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=V133I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_49973943_49974971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555099    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1962,147,0
11    49974931    rs12791255    G    A    291.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.11;MQ0=0;QD=29.19;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555099    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:325,27,0
11    50003191    rs4598671    C    A    1433.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.51;MQ0=0;QD=37.72;SNPEFF_AMINO_ACID_CHANGE=V283L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_50003009_50004071;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335238    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1467,108,0
11    50246573    rs2210097    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-347H15.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    50254207    rs1854687    A    C    110.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-347H15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529536    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:143,12,0
11    50254246    rs11245621    T    A    262.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-347H15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529536    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:296,27,0
11    50377923    rs692277    A    G    579.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-574M7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532521    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:612,45,0
11    50378340    rs2687653    G    A    122.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-574M7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532521    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
11    50379403    rs692607    T    C    3096.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.666;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;MQRankSum=1.275;QD=33.3;ReadPosRankSum=-0.209;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-574M7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532521    GT:AD:DP:GQ:PL    1/1:1,92:93:99:3130,196,0
11    50379454    .    G    GTTGTT    1723.41    PASS    AC=2;AF=1.00;AN=2;DP=48;FS=0.0;HRun=0;HaplotypeScore=307.1074;IndelType=I;MQ=58.71;MQ0=0;QD=35.17;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-574M7.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000532521    GT:AD:DP:GQ:PL    1/1:23,26:48:78.26:1765,78,0
11    51412453    rs545033    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319760    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    51483304    rs7482674    C    T    1483.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.12;MQ0=0;QD=35.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4C7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533375    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1517,114,0
11    51483353    rs111592531    G    A    802.70    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.88;MQ0=0;MQRankSum=0.208;QD=11.47;ReadPosRankSum=-0.385;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4C7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533375    GT:AD:DP:GQ:PL    0/1:37,33:70:99:833,0,1122
11    51483851    rs34676785    CG    C    1754.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=1;HaplotypeScore=121.4301;IndelType=D;MQ=58.93;MQ0=0;QD=39.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4C7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533375    GT:AD:DP:GQ:PL    1/1:0,45:44:99:1797,129,0
11    51484025    rs113780474    G    T    866.21    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.968;DB;DP=58;Dels=0.0;FS=9.72;HRun=0;HaplotypeScore=1.8947;MQ=58.84;MQ0=0;MQRankSum=0.864;QD=14.93;ReadPosRankSum=-1.113;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4C7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533375    GT:AD:DP:GQ:PL    0/1:28,30:58:99:896,0,943
11    51516000    rs11246607    C    T    1812.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.95;MQ0=0;QD=30.73;SNPEFF_AMINO_ACID_CHANGE=S240F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_51515282_51516211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328188    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1846,147,0
11    51516036    rs11246608    G    A    1781.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6634;MQ=43.66;MQ0=2;QD=28.73;SNPEFF_AMINO_ACID_CHANGE=C252Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_51515282_51516211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328188    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1814,147,0
11    51516144    rs11246609    A    G    1033.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.58;MQ0=3;QD=27.92;SNPEFF_AMINO_ACID_CHANGE=K288R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_51515282_51516211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328188    GT:AD:DP:GQ:PL    1/1:0,37:37:96.25:1066,96,0
11    51527637    rs111467734    G    A    1004.08    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.399;DB;DP=77;Dels=0.0;FS=2.138;HRun=1;HaplotypeScore=0.9993;MQ=59.17;MQ0=0;MQRankSum=0.609;QD=13.04;ReadPosRankSum=1.488;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4C50P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330155    GT:AD:DP:GQ:PL    0/1:42,35:77:99:1034,0,1510
11    55032177    rs10896569    G    A    200.64    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.46;MQ0=0;MQRankSum=-0.978;QD=15.43;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417545    GT:AD:DP:GQ:PL    0/1:5,8:13:99:231,0,164
11    55034914    rs3925362    A    G    2246.50    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.061;DB;DP=180;Dels=0.0;FS=10.509;HRun=0;HaplotypeScore=0.0;MQ=52.13;MQ0=1;MQRankSum=-5.733;QD=12.48;ReadPosRankSum=-0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417545    GT:AD:DP:GQ:PL    0/1:84,95:180:99:2276,0,2725
11    55038084    .    A    C    1414.18    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.306;DP=137;Dels=0.0;FS=3.164;HRun=0;HaplotypeScore=3.2478;MQ=45.98;MQ0=1;MQRankSum=0.768;QD=10.32;ReadPosRankSum=-0.617;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417545    GT:AD:DP:GQ:PL    0/1:79,58:137:99:1444,0,2288
11    55038375    rs3213870    T    C    2921.64    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.34;DB;DP=185;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.882;QD=15.79;ReadPosRankSum=1.423;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417545    GT:AD:DP:GQ:PL    0/1:83,102:185:99:2952,0,2428
11    55059756    rs7111912    T    C    2188.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.34;MQ0=22;QD=18.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    1/1:0,121:121:99:2221,210,0
11    55060056    rs10750860    T    A    452.87    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=55;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.96;MQ0=0;MQRankSum=0.346;QD=8.23;ReadPosRankSum=-0.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    0/1:26,29:55:99:483,0,825
11    55060101    rs4100285    A    G    510.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.26;MQ0=0;QD=28.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    1/1:0,18:18:45.11:543,45,0
11    55061014    rs4939160    G    A    36.60    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.69;MQ0=0;MQRankSum=1.026;QD=9.15;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    0/1:2,2:4:54.83:67,0,55
11    55061239    rs11229021    G    A    763.67    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.759;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9866;MQ=58.33;MQ0=0;MQRankSum=-0.992;QD=14.41;ReadPosRankSum=1.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    0/1:24,29:53:99:794,0,799
11    55061960    .    ATTTG    A    226.58    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=3.377;DP=20;FS=16.853;HRun=0;HaplotypeScore=86.4506;IndelType=D;MQ=56.81;MQ0=0;MQRankSum=-0.833;QD=10.79;ReadPosRankSum=1.623;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    0/1:16,5:20:99:266,0,741
11    55062539    rs140819790    G    T    282.55    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.82;DB;DP=31;Dels=0.0;FS=9.966;HRun=0;HaplotypeScore=0.9665;MQ=53.54;MQ0=0;MQRankSum=1.596;QD=9.11;ReadPosRankSum=0.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    0/1:19,12:31:99:313,0,627
11    55062746    rs1963420    G    A    580.68    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=0.055;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.19;MQ0=0;MQRankSum=0.497;QD=17.6;ReadPosRankSum=-0.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    0/1:13,20:33:99:611,0,429
11    55064557    rs1897839    G    A    3357.92    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.432;DB;DP=230;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.7263;MQ=54.39;MQ0=2;MQRankSum=-3.23;QD=14.6;ReadPosRankSum=-1.108;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526016    GT:AD:DP:GQ:PL    0/1:107,122:230:99:3358,0,3354
11    55071508    rs1897837    G    C    235.78    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8237;MQ=54.08;MQ0=0;MQRankSum=-0.427;QD=8.42;ReadPosRankSum=0.828;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-72M10.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534192    GT:AD:DP:GQ:PL    0/1:17,11:28:99:266,0,548
11    55111238    rs11229158    C    A    1671.71    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.366;DB;DP=135;Dels=0.0;FS=5.44;HRun=0;HaplotypeScore=2.5873;MQ=59.49;MQ0=0;MQRankSum=1.028;QD=12.38;ReadPosRankSum=0.627;SNPEFF_AMINO_ACID_CHANGE=L188I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55110627_55111707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4A16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314721    GT:AD:DP:GQ:PL    0/1:77,57:135:99:1702,0,2291
11    55111584    rs10896659    A    T    291.78    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.72;DB;DP=37;Dels=0.0;FS=1.45;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=7.89;ReadPosRankSum=-1.957;SNPEFF_AMINO_ACID_CHANGE=K303M;SNPEFF_CODON_CHANGE=aAg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55110627_55111707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4A16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314721    GT:AD:DP:GQ:PL    0/1:24,13:37:99:322,0,830
11    55135258    rs112583747    A    G    461.98    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.245;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9979;MQ=56.84;MQ0=0;MQRankSum=0.913;QD=17.11;ReadPosRankSum=-0.518;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314706    GT:AD:DP:GQ:PL    0/1:11,16:27:99:492,0,311
11    55135435    rs1425193    C    T    529.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.839;DB;DP=39;Dels=0.0;FS=1.273;HRun=0;HaplotypeScore=4.7849;MQ=58.81;MQ0=0;MQRankSum=0.117;QD=13.57;ReadPosRankSum=0.759;SNPEFF_AMINO_ACID_CHANGE=P26S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55135360_55136394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4A15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314706    GT:AD:DP:GQ:PL    0/1:19,19:39:99:559,0,607
11    55234263    rs558600    G    A    34.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4A13P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529316    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:64,0,72
11    55235069    rs670525    T    G    4791.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4A13P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529316    GT:AD:DP:GQ:PL    1/1:0,150:150:99:4792,352,0
11    55258469    rs472863    A    G    648.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DB;DP=55;Dels=0.0;FS=3.149;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.313;QD=11.78;ReadPosRankSum=0.194;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-367C21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532759    GT:AD:DP:GQ:PL    0/1:30,25:55:99:678,0,1026
11    55259085    rs556754    T    C    1650.16    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.257;DB;DP=144;Dels=0.0;FS=1.323;HRun=0;HaplotypeScore=1.5317;MQ=55.54;MQ0=0;MQRankSum=2.253;QD=11.46;ReadPosRankSum=0.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-367C21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532759    GT:AD:DP:GQ:PL    0/1:77,67:144:99:1680,0,2333
11    55322211    rs9804659    A    G    1178.66    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.338;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.75;MQ0=0;MQRankSum=0.203;QD=12.95;ReadPosRankSum=-1.427;SNPEFF_AMINO_ACID_CHANGE=K143;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55321783_55322895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314644    GT:AD:DP:GQ:PL    0/1:48,43:91:99:1209,0,1498
11    55339652    rs1459101    C    T    1044.52    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.331;DB;DP=69;Dels=0.0;FS=0.929;HRun=0;HaplotypeScore=1.7719;MQ=59.33;MQ0=0;MQRankSum=0.463;QD=15.14;ReadPosRankSum=1.63;SNPEFF_AMINO_ACID_CHANGE=Q17*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_55339604_55340536;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C16;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000314634    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1075,0,939
11    55339798    rs557667    C    T    1208.78    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.153;DB;DP=122;Dels=0.0;FS=0.694;HRun=2;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=0.701;QD=9.91;ReadPosRankSum=0.636;SNPEFF_AMINO_ACID_CHANGE=S65;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55339604_55340536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314634    GT:AD:DP:GQ:PL    0/1:74,48:122:99:1239,0,2392
11    55339829    rs557590    A    G    1584.63    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.12;DB;DP=138;Dels=0.0;FS=1.36;HRun=0;HaplotypeScore=1.6809;MQ=59.67;MQ0=0;MQRankSum=-0.635;QD=11.48;ReadPosRankSum=-1.181;SNPEFF_AMINO_ACID_CHANGE=T76A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55339604_55340536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314634    GT:AD:DP:GQ:PL    0/1:81,57:138:99:1615,0,2528
11    55340379    rs559449    T    C    422.70    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.033;DB;DP=27;Dels=0.0;FS=5.907;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.331;QD=15.66;ReadPosRankSum=1.13;SNPEFF_AMINO_ACID_CHANGE=L259P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55339604_55340536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314634    GT:AD:DP:GQ:PL    0/1:10,17:27:99:453,0,275
11    55433040    rs11230600    T    C    662.70    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.864;DB;DP=44;Dels=0.0;FS=2.587;HRun=1;HaplotypeScore=2.5149;MQ=57.76;MQ0=0;MQRankSum=0.84;QD=15.06;ReadPosRankSum=-1.571;SNPEFF_AMINO_ACID_CHANGE=I133T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55432614_55433671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4C6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314259    GT:AD:DP:GQ:PL    0/1:20,24:44:99:693,0,654
11    55494172    rs1023921    T    C    1159.25    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.247;DB;DP=91;Dels=0.0;FS=0.815;HRun=0;HaplotypeScore=0.9993;MQ=59.75;MQ0=0;MQRankSum=-0.334;QD=12.74;ReadPosRankSum=-0.025;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5D3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333984    GT:AD:DP:GQ:PL    0/1:46,45:91:99:1189,0,1532
11    55494829    rs1027729    G    T    110.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.86;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5D3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333984    GT:AD:DP:GQ:PL    0/1:4,4:8:99:141,0,142
11    55522549    rs11230864    C    T    1180.75    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.023;DB;DP=71;Dels=0.0;FS=5.054;HRun=1;HaplotypeScore=0.9992;MQ=59.74;MQ0=0;MQRankSum=-1.97;QD=16.63;ReadPosRankSum=-0.248;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5D17P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328673    GT:AD:DP:GQ:PL    0/1:32,39:71:99:1211,0,969
11    55522583    rs382150    C    T    2939.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=35.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5D17P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328673    GT:AD:DP:GQ:PL    1/1:1,81:82:99:2973,226,0
11    55522729    rs393009    C    T    1432.51    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.034;DB;DP=108;Dels=0.0;FS=2.498;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-0.372;QD=13.26;ReadPosRankSum=-1.651;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5D17P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328673    GT:AD:DP:GQ:PL    0/1:56,52:108:99:1463,0,1925
11    55522924    rs443028    A    G    3355.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.76;MQ0=0;QD=34.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5D17P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328673    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3356,253,0
11    55523384    rs438025    A    G    1064.84    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.055;DB;DP=71;Dels=0.0;FS=3.377;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.063;QD=15.0;ReadPosRankSum=-0.156;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5D17P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328673    GT:AD:DP:GQ:PL    0/1:33,38:71:99:1095,0,983
11    55523547    rs438771    T    G    509.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5D17P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328673    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:542,39,0
11    55541098    rs297118    G    A    2789.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.7;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=C62Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55540914_55541858;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361760    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2823,217,0
11    55563776    rs297054    T    G    2273.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=37.28;SNPEFF_AMINO_ACID_CHANGE=S249A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55563032_55563976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335605    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2307,172,0
11    55563900    rs297055    T    C    490.52    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.786;DB;DP=39;Dels=0.0;FS=2.955;HRun=1;HaplotypeScore=0.8667;MQ=57.59;MQ0=0;MQRankSum=1.301;QD=12.58;ReadPosRankSum=0.132;SNPEFF_AMINO_ACID_CHANGE=L290P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55563032_55563976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335605    GT:AD:DP:GQ:PL    0/1:20,18:39:99:521,0,674
11    55587117    rs297082    T    A    989.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=T4;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55587086_55588073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333976    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1023,75,0
11    55587511    rs297081    A    G    3056.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.74;MQ0=0;QD=35.14;SNPEFF_AMINO_ACID_CHANGE=N136D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55587086_55588073;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333976    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3090,229,0
11    55587914    rs55832853    A    G    1092.78    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.753;DB;DP=66;Dels=0.0;FS=11.269;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-2.286;QD=16.56;ReadPosRankSum=-1.475;SNPEFF_AMINO_ACID_CHANGE=H270R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55587086_55588073;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333976    GT:AD:DP:GQ:PL    0/1:30,36:66:99:1123,0,963
11    55595081    rs7102394    C    T    1307.91    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=96;Dels=0.0;FS=0.767;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.357;QD=13.62;ReadPosRankSum=1.401;SNPEFF_AMINO_ACID_CHANGE=P129;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55594695_55595630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378397    GT:AD:DP:GQ:PL    0/1:52,44:96:99:1338,0,1578
11    55595324    rs7102663    C    T    1741.71    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.184;DB;DP=116;Dels=0.0;FS=6.232;HRun=0;HaplotypeScore=0.9989;MQ=59.45;MQ0=0;MQRankSum=-0.243;QD=14.89;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=T210;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55594695_55595630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378397    GT:AD:DP:GQ:PL    0/1:57,59:116:99:1772,0,1854
11    55606302    rs6591699    G    T    3558.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=L25;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55606228_55607214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378396    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3559,262,0
11    55606693    rs6591700    G    A    869.64    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.325;DB;DP=61;Dels=0.0;FS=1.04;HRun=0;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=0.599;QD=14.26;ReadPosRankSum=0.685;SNPEFF_AMINO_ACID_CHANGE=A156T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55606228_55607214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378396    GT:AD:DP:GQ:PL    0/1:31,30:61:99:900,0,877
11    55606818    rs11231253    C    T    1219.06    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.095;DB;DP=90;Dels=0.0;FS=1.8;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.727;QD=13.55;ReadPosRankSum=-1.05;SNPEFF_AMINO_ACID_CHANGE=S197;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55606228_55607214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5D16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378396    GT:AD:DP:GQ:PL    0/1:47,43:90:99:1249,0,1571
11    55623847    rs7116820    T    C    5514.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9916;MQ=59.44;MQ0=0;QD=33.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR9M1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459641    GT:AD:DP:GQ:PL    1/1:0,162:163:99:5515,424,0
11    55633347    rs113379711    TTC    T    427.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=81.1923;IndelType=D;MQ=45.77;MQ0=0;MQRankSum=-1.552;QD=30.51;ReadPosRankSum=1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-738O11.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526389    GT:AD:DP:GQ:PL    1/1:1,13:14:22.25:469,22,0
11    55648971    rs4939537    T    G    56.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.13;MQ0=0;QD=18.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244891    GT:AD:DP:GQ:PL    1/1:0,3:3:9:89,9,0
11    55652963    rs2063276    A    G    6689.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=203;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=48.31;MQ0=0;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=N20S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55652901_55653315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449290    GT:AD:DP:GQ:PL    1/1:0,202:203:99:6689,530,0
11    55652971    rs2063277    C    A    6347.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=195;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5149;MQ=47.97;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=L23I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55652901_55653315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449290    GT:AD:DP:GQ:PL    1/1:0,195:195:99:6347,502,0
11    55653164    rs10897403    G    A    2329.07    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.605;DB;DP=168;Dels=0.0;FS=7.889;HRun=1;HaplotypeScore=0.9894;MQ=57.73;MQ0=0;MQRankSum=0.487;QD=13.86;ReadPosRankSum=-0.03;SNPEFF_AMINO_ACID_CHANGE=S87N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55652901_55653315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449290    GT:AD:DP:GQ:PL    0/1:88,80:168:99:2359,0,2851
11    55655932    rs3862670    C    T    933.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.56;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244891    GT:AD:DP:GQ:PL    1/1:0,28:28:72.22:966,72,0
11    55656483    rs7483200    T    A    3739.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.441;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.1683;MQ=57.39;MQ0=0;MQRankSum=1.701;QD=31.16;ReadPosRankSum=-0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244891    GT:AD:DP:GQ:PL    1/1:1,118:120:99:3739,286,0
11    55656682    rs4107304    G    C    1495.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.83;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244891    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1528,117,0
11    55656762    rs12224686    C    T    705.62    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.454;DB;DP=49;Dels=0.0;FS=1.544;HRun=1;HaplotypeScore=0.0;MQ=56.08;MQ0=0;MQRankSum=1.474;QD=14.4;ReadPosRankSum=-0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244891    GT:AD:DP:GQ:PL    0/1:25,24:49:99:736,0,845
11    55657320    rs11231443    T    A    130.92    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.097;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=-0.323;QD=9.35;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244891    GT:AD:DP:GQ:PL    0/1:8,6:14:99:161,0,259
11    55657394    rs7126397    A    G    1443.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244891    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1477,114,0
11    55657399    rs7120357    C    T    1460.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244891    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1493,111,0
11    55681336    rs11231529    G    A    721.08    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.274;DB;DP=62;Dels=0.0;FS=8.199;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.561;QD=11.63;ReadPosRankSum=1.13;SNPEFF_AMINO_ACID_CHANGE=C241;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55681126_55682058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5W2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344514    GT:AD:DP:GQ:PL    0/1:36,26:62:99:751,0,1221
11    55681494    rs2457239    G    A    1885.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=R189C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55681126_55682058;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5W2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344514    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1918,141,0
11    55682111    rs2940752    T    G    691.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5W2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344514    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:725,54,0
11    55734972    rs11231705    A    T    213.63    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.064;QD=10.68;ReadPosRankSum=1.899;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10AG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312345    GT:AD:DP:GQ:PL    0/1:11,9:20:99:244,0,356
11    55746891    rs7481466    G    A    2306.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-328E22.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399170    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2339,175,0
11    55747554    rs66595819    G    C    736.66    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.77;MQ0=0;MQRankSum=0.561;QD=13.9;ReadPosRankSum=0.169;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-328E22.11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399170    GT:AD:DP:GQ:PL    0/1:28,25:53:99:767,0,859
11    55761081    rs74445693    TA    T    83.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;FS=0.0;HRun=7;HaplotypeScore=22.8588;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.098;QD=8.39;ReadPosRankSum=-0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278409    GT:AD:DP:GQ:PL    0/1:5,5:10:99:123,0,157
11    55761221    rs2449134    C    T    1879.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=59.11;MQ0=0;QD=32.41;SNPEFF_AMINO_ACID_CHANGE=S294N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55761157_55762101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278409    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1913,141,0
11    55761738    rs2128152    T    G    2193.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7882;MQ=57.67;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=R122;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55761157_55762101;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278409    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2226,183,0
11    55762166    .    AC    A    140.75    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DP=11;FS=0.0;HRun=1;HaplotypeScore=69.8565;IndelType=D;MQ=56.71;MQ0=0;MQRankSum=-1.061;QD=12.8;ReadPosRankSum=2.003;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278409    GT:AD:DP:GQ:PL    0/1:5,6:11:34.46:180,0,34
11    55783179    .    T    C    754.31    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=3.662;DP=54;Dels=0.0;FS=4.183;HRun=0;HaplotypeScore=0.8667;MQ=59.45;MQ0=0;MQRankSum=-1.698;QD=13.97;ReadPosRankSum=0.652;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5F2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331916    GT:AD:DP:GQ:PL    0/1:25,29:54:99:784,0,657
11    55798152    rs1482011    G    A    1980.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=L86;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55797895_55798869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313555    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2014,147,0
11    55821842    rs2512747    C    T    811.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5AQ1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331596    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:845,63,0
11    55822189    rs61729642    A    T    1946.76    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=3.276;DB;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.64;MQ0=0;MQRankSum=0.333;QD=15.21;ReadPosRankSum=-1.563;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5AQ1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331596    GT:AD:DP:GQ:PL    0/1:64,63:128:99:1977,0,2075
11    55822802    rs1351540    C    T    1193.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5AQ1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331596    GT:AD:DP:GQ:PL    1/1:0,35:35:93.28:1226,93,0
11    55860780    rs1842700    G    A    2817.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=33.54;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_55860753_55861762;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302124    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2851,214,0
11    55864963    rs2449155    C    T    87.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8I2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302124    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
11    55872876    rs2512961    C    T    6720.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.6;MQ0=0;QD=36.73;SNPEFF_AMINO_ACID_CHANGE=H120Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55872519_55873457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313503    GT:AD:DP:GQ:PL    1/1:0,183:183:99:6721,512,0
11    55873024    rs2449148    A    G    4697.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.814;MQ=58.7;MQ0=0;QD=35.05;SNPEFF_AMINO_ACID_CHANGE=Y169C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55872519_55873457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313503    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4697,343,0
11    55873368    rs1842696    G    A    3059.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5963;MQ=58.98;MQ0=0;QD=32.2;SNPEFF_AMINO_ACID_CHANGE=V284M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55872519_55873457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313503    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3092,229,0
11    55873475    rs2170447    C    T    1439.85    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DB;DP=89;Dels=0.0;FS=1.872;HRun=1;HaplotypeScore=0.8941;MQ=59.48;MQ0=0;MQRankSum=-0.358;QD=16.18;ReadPosRankSum=-0.612;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313503    GT:AD:DP:GQ:PL    0/1:42,47:89:99:1470,0,1231
11    55889790    rs2035408    G    T    1008.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.76;MQ0=0;QD=38.78;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313472    GT:AD:DP:GQ:PL    1/1:0,26:26:78.25:1041,78,0
11    55890257    rs1842691    C    T    3519.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=48.03;MQ0=2;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=P137S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55889849_55890787;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8H3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313472    GT:AD:DP:GQ:PL    1/1:0,102:103:99:3520,280,0
11    55944048    rs10896103    G    C    622.93    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6075;MQ=59.42;MQ0=0;MQRankSum=-1.544;QD=15.57;ReadPosRankSum=-0.704;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5J2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312298    GT:AD:DP:GQ:PL    0/1:21,19:40:99:653,0,706
11    55956401    rs4320968    T    G    663.23    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.862;DB;DP=39;Dels=0.0;FS=15.124;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.487;QD=17.01;ReadPosRankSum=-0.014;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8V1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395193    GT:AD:DP:GQ:PL    0/1:15,24:39:99:693,0,489
11    55978956    rs1481927    G    A    1335.11    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=2.589;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5253;MQ=59.7;MQ0=0;MQRankSum=0.524;QD=17.57;ReadPosRankSum=1.499;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8J2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533152    GT:AD:DP:GQ:PL    0/1:33,43:76:99:1365,0,966
11    55979266    rs7130251    C    T    298.89    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=25;Dels=0.0;FS=3.171;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.348;QD=11.96;ReadPosRankSum=0.637;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8J2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533152    GT:AD:DP:GQ:PL    0/1:14,11:25:99:329,0,445
11    56000403    rs10791893    C    G    168.21    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.091;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.547;QD=5.26;ReadPosRankSum=0.501;SNPEFF_AMINO_ACID_CHANGE=V87L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55999490_56000737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5T2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313264    GT:AD:DP:GQ:PL    0/1:25,7:32:99:198,0,871
11    56000600    rs3919907    G    T    651.19    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.902;DB;DP=56;Dels=0.0;FS=10.888;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.91;QD=11.63;ReadPosRankSum=1.464;SNPEFF_AMINO_ACID_CHANGE=S21Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_55999490_56000737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5T2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313264    GT:AD:DP:GQ:PL    0/1:34,22:56:99:681,0,1182
11    56015479    rs1531757    A    G    1611.72    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=2.447;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.399;QD=19.42;ReadPosRankSum=0.903;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5T3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303059    GT:AD:DP:GQ:PL    0/1:32,51:83:99:1642,0,1063
11    56043604    rs12360890    A    G    2100.63    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.502;DB;DP=153;Dels=0.0;FS=0.629;HRun=1;HaplotypeScore=0.8667;MQ=56.4;MQ0=0;MQRankSum=-1.457;QD=13.64;ReadPosRankSum=0.468;SNPEFF_AMINO_ACID_CHANGE=S164G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56043029_56044146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5T1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313033    GT:AD:DP:GQ:PL    0/1:79,74:153:99:2131,0,2660
11    56043702    rs7125697    G    C    2206.95    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.591;DB;DP=127;Dels=0.0;FS=3.283;HRun=1;HaplotypeScore=1.8332;MQ=58.06;MQ0=0;MQRankSum=0.059;QD=17.38;ReadPosRankSum=-0.43;SNPEFF_AMINO_ACID_CHANGE=L196;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56043029_56044146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5T1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313033    GT:AD:DP:GQ:PL    0/1:54,73:127:99:2237,0,1669
11    56057419    rs17150286    A    G    245.18    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=1.782;DB;DP=33;Dels=0.0;FS=5.185;HRun=0;HaplotypeScore=1.6828;MQ=59.3;MQ0=0;MQRankSum=0.725;QD=7.43;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313022    GT:AD:DP:GQ:PL    0/1:23,10:33:99:275,0,838
11    56058197    rs1842674    G    A    1663.73    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.936;DB;DP=111;Dels=0.0;FS=2.112;HRun=1;HaplotypeScore=1.8893;MQ=59.38;MQ0=0;MQRankSum=1.191;QD=14.99;ReadPosRankSum=0.845;SNPEFF_AMINO_ACID_CHANGE=L110;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56057620_56058526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395186    GT:AD:DP:GQ:PL    0/1:56,55:111:99:1694,0,1790
11    56086147    rs960193    T    G    1229.61    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.822;DB;DP=73;Dels=0.0;FS=0.938;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=0.746;QD=16.84;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=L122R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56085783_56086721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312711    GT:AD:DP:GQ:PL    0/1:30,43:73:99:1260,0,904
11    56113516    rs1905055    T    C    519.23    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=12.98;ReadPosRankSum=0.027;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_11_56113421_56114507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8K1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000279783    GT:AD:DP:GQ:PL    0/1:21,19:40:99:549,0,680
11    56113575    rs10896271    A    G    503.48    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.275;DB;DP=56;Dels=0.0;FS=1.178;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.462;QD=8.99;ReadPosRankSum=-1.223;SNPEFF_AMINO_ACID_CHANGE=M21V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56113421_56114507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279783    GT:AD:DP:GQ:PL    0/1:36,20:56:99:533,0,1095
11    56113593    rs10896272    C    A    582.87    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.988;DB;DP=57;Dels=0.0;FS=2.386;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.06;QD=10.23;ReadPosRankSum=-1.749;SNPEFF_AMINO_ACID_CHANGE=P27T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56113421_56114507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279783    GT:AD:DP:GQ:PL    0/1:33,24:57:99:613,0,1051
11    56127746    rs7942390    A    G    2694.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=54.74;MQ0=0;QD=34.11;SNPEFF_AMINO_ACID_CHANGE=R8;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56127691_56128764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303039    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2728,211,0
11    56128081    rs10896290    A    G    1196.67    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.093;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7306;MQ=60.0;MQ0=0;MQRankSum=-0.004;QD=13.6;ReadPosRankSum=1.453;SNPEFF_AMINO_ACID_CHANGE=Y120C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56127691_56128764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303039    GT:AD:DP:GQ:PL    0/1:50,38:88:99:1227,0,1535
11    56128524    rs7928704    C    T    3876.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=59.39;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=L268;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56127691_56128764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303039    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3877,280,0
11    56143156    rs11228165    C    T    1238.01    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.985;DB;DP=78;Dels=0.0;FS=7.911;HRun=0;HaplotypeScore=0.9916;MQ=57.96;MQ0=0;MQRankSum=-0.967;QD=15.87;ReadPosRankSum=-1.816;SNPEFF_AMINO_ACID_CHANGE=D19;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:36,42:78:99:1268,0,1096
11    56143158    rs11228166    A    G    1100.71    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.467;DB;DP=78;Dels=0.0;FS=7.681;HRun=0;HaplotypeScore=0.9967;MQ=57.96;MQ0=0;MQRankSum=-0.628;QD=14.11;ReadPosRankSum=-1.659;SNPEFF_AMINO_ACID_CHANGE=H20R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:37,41:78:99:1131,0,1103
11    56143357    rs76949582    G    A    42.29    QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.665;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.17;MQ0=0;MQRankSum=-6.048;QD=0.37;ReadPosRankSum=-3.907;SNPEFF_AMINO_ACID_CHANGE=L86;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:101,14:115:72.28:72,0,3516
11    56143434    rs10791961    C    G    1442.98    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.049;DB;DP=88;Dels=0.0;FS=6.965;HRun=0;HaplotypeScore=11.7666;MQ=58.68;MQ0=0;MQRankSum=0.381;QD=16.4;ReadPosRankSum=-2.669;SNPEFF_AMINO_ACID_CHANGE=S112C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:40,48:88:99:1473,0,1277
11    56143501    rs12272237    T    G    331.03    SnpCluster    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.766;DB;DP=112;Dels=0.0;FS=25.119;HRun=1;HaplotypeScore=1.4538;MQ=53.53;MQ0=0;MQRankSum=-7.261;QD=2.96;ReadPosRankSum=-0.692;SNPEFF_AMINO_ACID_CHANGE=V134;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:86,26:112:99:361,0,2988
11    56143508    rs10791962    A    T    225.48    QDFilter2;SnpCluster    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.857;DB;DP=114;Dels=0.0;FS=22.263;HRun=0;HaplotypeScore=1.4538;MQ=53.65;MQ0=0;MQRankSum=-6.969;QD=1.98;ReadPosRankSum=0.799;SNPEFF_AMINO_ACID_CHANGE=T137S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:89,25:114:99:255,0,2985
11    56143510    rs10791963    T    C    215.45    QDFilter2;SnpCluster    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=116;Dels=0.0;FS=25.203;HRun=2;HaplotypeScore=1.4538;MQ=53.77;MQ0=0;MQRankSum=-7.288;QD=1.86;ReadPosRankSum=0.879;SNPEFF_AMINO_ACID_CHANGE=T137;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:91,24:116:99:245,0,3204
11    56143528    rs10791964    A    G    389.15    SnpCluster    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.646;DB;DP=133;Dels=0.0;FS=30.34;HRun=0;HaplotypeScore=1.5616;MQ=53.26;MQ0=0;MQRankSum=-7.415;QD=2.93;ReadPosRankSum=0.685;SNPEFF_AMINO_ACID_CHANGE=Q143;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:106,27:133:99:419,0,3442
11    56143534    rs78854227    A    G    336.23    SnpCluster    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=0.51;DB;DP=134;Dels=0.0;FS=33.139;HRun=1;HaplotypeScore=2.3503;MQ=53.39;MQ0=0;MQRankSum=-7.409;QD=2.51;ReadPosRankSum=1.097;SNPEFF_AMINO_ACID_CHANGE=V145;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:108,25:134:99:366,0,3451
11    56143537    rs74691432    A    T    233.44    QDFilter2;SnpCluster    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=1.308;DB;DP=136;Dels=0.0;FS=33.275;HRun=0;HaplotypeScore=2.3503;MQ=53.49;MQ0=0;MQRankSum=-6.927;QD=1.72;ReadPosRankSum=1.484;SNPEFF_AMINO_ACID_CHANGE=A146;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:112,24:136:99:263,0,3446
11    56143539    rs75226392    T    C    181.27    QDFilter2;SnpCluster    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.148;DB;DP=135;Dels=0.0;FS=31.13;HRun=0;HaplotypeScore=2.3503;MQ=53.25;MQ0=0;MQRankSum=-7.039;QD=1.34;ReadPosRankSum=1.28;SNPEFF_AMINO_ACID_CHANGE=V147A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:111,24:135:99:211,0,3444
11    56143544    rs78532946    T    C    52.23    QDFilter2;SnpCluster    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=2.409;DB;DP=138;Dels=0.0;FS=34.21;HRun=0;HaplotypeScore=2.7051;MQ=53.03;MQ0=0;MQRankSum=-6.903;QD=0.38;ReadPosRankSum=0.877;SNPEFF_AMINO_ACID_CHANGE=Y149H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:114,24:138:82.22:82,0,3475
11    56143570    rs11228169    A    G    255.23    QDFilter2    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=0.763;DB;DP=163;Dels=0.0;FS=51.392;HRun=0;HaplotypeScore=5.0588;MQ=49.93;MQ0=0;MQRankSum=-6.873;QD=1.57;ReadPosRankSum=-3.765;SNPEFF_AMINO_ACID_CHANGE=L157;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:123,39:163:99:285,0,3563
11    56143592    rs17150411    C    T    1441.83    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=4.321;DB;DP=185;Dels=0.0;FS=3.744;HRun=0;HaplotypeScore=0.6651;MQ=48.97;MQ0=0;MQRankSum=2.114;QD=7.79;ReadPosRankSum=1.356;SNPEFF_AMINO_ACID_CHANGE=R165C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:126,59:185:99:1472,0,3048
11    56143690    rs4990123    C    A    555.83    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.584;DB;DP=118;Dels=0.0;FS=28.251;HRun=0;HaplotypeScore=6.925;MQ=45.81;MQ0=0;MQRankSum=-4.384;QD=4.71;ReadPosRankSum=-2.532;SNPEFF_AMINO_ACID_CHANGE=L197;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:74,44:118:99:586,0,2277
11    56143762    rs79307272    C    T    213.68    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.368;DB;DP=82;Dels=0.0;FS=33.596;HRun=1;HaplotypeScore=0.0;MQ=50.57;MQ0=0;MQRankSum=-6.002;QD=2.61;ReadPosRankSum=-0.457;SNPEFF_AMINO_ACID_CHANGE=I221;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:61,21:82:99:244,0,2078
11    56143767    rs79705206    C    T    139.15    QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.366;DB;DP=78;Dels=0.0;FS=27.69;HRun=3;HaplotypeScore=0.0;MQ=51.08;MQ0=0;MQRankSum=-5.506;QD=1.78;ReadPosRankSum=-0.09;SNPEFF_AMINO_ACID_CHANGE=S223F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:60,18:78:99:169,0,2033
11    56143795    rs78729591    G    A    111.56    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.644;DB;DP=79;Dels=0.0;FS=32.425;HRun=1;HaplotypeScore=0.9983;MQ=53.8;MQ0=0;MQRankSum=-5.569;QD=1.41;ReadPosRankSum=-1.331;SNPEFF_AMINO_ACID_CHANGE=E232;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:64,15:79:99:142,0,2190
11    56143966    rs12291978    C    T    1712.69    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.352;DB;DP=133;Dels=0.0;FS=0.651;HRun=1;HaplotypeScore=3.9949;MQ=59.65;MQ0=0;MQRankSum=0.964;QD=12.88;ReadPosRankSum=0.426;SNPEFF_AMINO_ACID_CHANGE=I289;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:68,65:133:99:1743,0,1968
11    56143977    rs12272403    A    G    1607.98    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.723;DB;DP=125;Dels=0.0;FS=4.379;HRun=1;HaplotypeScore=2.8135;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=12.86;ReadPosRankSum=0.468;SNPEFF_AMINO_ACID_CHANGE=Q293R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56143100_56144029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:66,59:125:99:1638,0,1945
11    56144127    rs6591257    T    C    292.21    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.725;QD=16.23;ReadPosRankSum=0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8U1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302270    GT:AD:DP:GQ:PL    0/1:7,11:18:99:322,0,245
11    56184659    rs11228306    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312253    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
11    56184888    rs998544    G    A    822.18    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=83;Dels=0.0;FS=2.963;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.051;QD=9.91;ReadPosRankSum=-2.21;SNPEFF_AMINO_ACID_CHANGE=A274V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56184734_56185708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312253    GT:AD:DP:GQ:PL    0/1:47,36:83:99:852,0,1404
11    56185159    rs7930678    A    G    1043.16    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.183;DB;DP=69;Dels=0.0;FS=2.124;HRun=4;HaplotypeScore=1.9993;MQ=59.67;MQ0=0;MQRankSum=-0.993;QD=15.12;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=F184L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56184734_56185708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312253    GT:AD:DP:GQ:PL    0/1:30,38:69:99:1073,0,1032
11    56185327    rs7933772    T    C    1146.56    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.624;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4476;MQ=59.0;MQ0=0;MQRankSum=0.231;QD=13.65;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=S128G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56184734_56185708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312253    GT:AD:DP:GQ:PL    0/1:40,43:83:99:1177,0,1170
11    56185345    rs6591324    A    G    2523.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=58.85;MQ0=0;QD=34.57;SNPEFF_AMINO_ACID_CHANGE=C122R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56184734_56185708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312253    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2557,193,0
11    56185689    rs7931261    A    G    1245.71    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.726;DB;DP=89;Dels=0.0;FS=0.825;HRun=0;HaplotypeScore=2.4722;MQ=59.74;MQ0=0;MQRankSum=-0.2;QD=14.0;ReadPosRankSum=0.134;SNPEFF_AMINO_ACID_CHANGE=I7T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56184734_56185708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5R1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312253    GT:AD:DP:GQ:PL    0/1:43,46:89:99:1276,0,1356
11    56216401    rs66604620    T    TA    218.20    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.529;DB;DP=30;FS=3.687;HRun=11;HaplotypeScore=66.1033;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.09;QD=7.27;ReadPosRankSum=-0.363;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5M4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529436    GT:AD:DP:GQ:PL    0/1:19,11:30:99:257,0,270
11    56294275    rs658845    T    C    462.17    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.915;DB;DP=57;Dels=0.0;FS=2.377;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.675;QD=8.11;ReadPosRankSum=-2.402;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5M5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529703    GT:AD:DP:GQ:PL    0/1:37,20:57:99:492,0,1122
11    56294338    rs646472    G    A    1831.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=33.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5M5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529703    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1865,138,0
11    56294818    rs637912    C    T    351.87    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.647;DB;DP=26;Dels=0.0;FS=6.383;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.156;QD=13.53;ReadPosRankSum=0.156;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5M5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529703    GT:AD:DP:GQ:PL    0/1:15,11:26:99:382,0,423
11    56310222    rs628524    C    T    889.33    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=65;Dels=0.0;FS=0.971;HRun=1;HaplotypeScore=1.8583;MQ=59.65;MQ0=0;MQRankSum=0.903;QD=13.68;ReadPosRankSum=-0.123;SNPEFF_AMINO_ACID_CHANGE=S171N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56309746_56310757;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5M11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528616    GT:AD:DP:GQ:PL    0/1:35,30:65:99:919,0,1060
11    56344993    rs10792043    C    A    1443.92    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=118;Dels=0.0;FS=1.501;HRun=3;HaplotypeScore=0.6651;MQ=55.0;MQ0=1;MQRankSum=0.819;QD=12.24;ReadPosRankSum=0.119;SNPEFF_AMINO_ACID_CHANGE=V69L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56344212_56345263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5M10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526812    GT:AD:DP:GQ:PL    0/1:66,52:118:99:1474,0,2072
11    56365407    rs11228672    G    C    138.45    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.513;QD=8.14;ReadPosRankSum=-0.049;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5M13P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433944    GT:AD:DP:GQ:PL    0/1:10,7:17:99:168,0,266
11    56380008    rs12292069    C    T    813.95    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.564;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.06;MQ0=0;MQRankSum=-0.18;QD=13.57;ReadPosRankSum=1.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526538    GT:AD:DP:GQ:PL    0/1:35,25:60:99:844,0,1167
11    56380134    rs4939078    C    G    2143.32    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.342;DB;DP=139;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9947;MQ=50.92;MQ0=0;MQRankSum=1.564;QD=15.42;ReadPosRankSum=0.088;SNPEFF_AMINO_ACID_CHANGE=S282T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56380031_56380978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526538    GT:AD:DP:GQ:PL    0/1:63,76:139:99:2173,0,1878
11    56409603    rs11606499    C    T    459.07    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.892;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.002;QD=9.98;ReadPosRankSum=0.709;SNPEFF_AMINO_ACID_CHANGE=A105T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56408965_56409915;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302981    GT:AD:DP:GQ:PL    0/1:28,18:46:99:489,0,951
11    56431216    rs11228710    C    T    1023.72    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=76;Dels=0.0;FS=1.912;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.11;QD=13.47;ReadPosRankSum=2.565;SNPEFF_AMINO_ACID_CHANGE=Q19*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_56431138_56432163;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AR1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000302969    GT:AD:DP:GQ:PL    0/1:42,34:76:99:1054,0,1159
11    56458133    rs7952622    C    G    1583.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=52.8;MQ0=0;QD=29.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-59K5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530434    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1617,132,0
11    56467787    rs74218731    A    G    55.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.0;MQ0=0;MQRankSum=-1.537;QD=9.21;ReadPosRankSum=0.406;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:3,3:6:69.73:85,0,70
11    56467810    rs76085479    A    T    46.23    SnpCluster    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.11;MQ0=0;MQRankSum=-2.054;QD=5.14;ReadPosRankSum=2.054;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:6,3:9:76.23:76,0,177
11    56467813    rs77180330    A    G    76.66    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.69;MQ0=0;MQRankSum=-2.383;QD=7.67;ReadPosRankSum=1.036;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:6,4:10:99:107,0,166
11    56467816    rs78119960    G    T    76.66    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.69;MQ0=0;MQRankSum=-1.568;QD=7.67;ReadPosRankSum=0.741;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:6,4:10:99:107,0,166
11    56467819    rs78036340    A    G    73.65    SnpCluster    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.5;MQ0=0;MQRankSum=-2.037;QD=6.7;ReadPosRankSum=1.034;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:7,4:11:99:104,0,205
11    56467833    rs73474897    T    C    138.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=49.17;MQ0=0;MQRankSum=-2.001;QD=9.91;ReadPosRankSum=-0.452;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:8,6:14:99:169,0,264
11    56467881    rs73474900    T    C    372.58    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=35;Dels=0.0;FS=4.263;HRun=0;HaplotypeScore=0.0;MQ=54.49;MQ0=0;MQRankSum=-2.156;QD=10.65;ReadPosRankSum=-0.362;SNPEFF_AMINO_ACID_CHANGE=H6;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:19,16:35:99:403,0,603
11    56467926    rs1704284    A    G    538.30    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.926;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=53.58;MQ0=0;MQRankSum=-1.713;QD=10.99;ReadPosRankSum=0.607;SNPEFF_AMINO_ACID_CHANGE=G21;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:25,24:49:99:568,0,619
11    56467945    rs36184181    G    T    281.20    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.946;DB;DP=51;Dels=0.0;FS=4.62;HRun=1;HaplotypeScore=0.0;MQ=54.04;MQ0=0;MQRankSum=-1.561;QD=5.51;ReadPosRankSum=0.217;SNPEFF_AMINO_ACID_CHANGE=V28L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:36,15:51:99:311,0,1003
11    56468020    rs532637    T    C    771.24    HaplotypeScoreFilter13    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=57;Dels=0.0;FS=4.062;HRun=2;HaplotypeScore=14.4343;MQ=50.49;MQ0=0;MQRankSum=0.243;QD=13.53;ReadPosRankSum=-0.226;SNPEFF_AMINO_ACID_CHANGE=C53R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:22,35:57:99:801,0,666
11    56468021    rs532635    G    A    54.03    HaplotypeScoreFilter13;QDFilter2    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=57;Dels=0.0;FS=5.503;HRun=0;HaplotypeScore=16.1331;MQ=50.49;MQ0=0;MQRankSum=-3.386;QD=0.95;ReadPosRankSum=-0.777;SNPEFF_AMINO_ACID_CHANGE=C53Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:41,16:57:84.02:84,0,1276
11    56468044    rs3975155    T    G    579.70    SnpCluster    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=47.3;MQ0=0;MQRankSum=-3.858;QD=10.54;ReadPosRankSum=-0.833;SNPEFF_AMINO_ACID_CHANGE=F61V;SNPEFF_CODON_CHANGE=Ttc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:19,36:55:99:610,0,595
11    56468047    rs2865519    A    G    494.35    SnpCluster    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.502;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=47.22;MQ0=0;MQRankSum=-3.412;QD=9.15;ReadPosRankSum=-0.313;SNPEFF_AMINO_ACID_CHANGE=T62A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:20,34:54:99:524,0,613
11    56468048    rs2865520    C    T    1318.71    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=46.94;MQ0=0;QD=24.88;SNPEFF_AMINO_ACID_CHANGE=T62I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1352,108,0
11    56468111    rs602224    C    T    866.71    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=85;Dels=0.0;FS=8.46;HRun=0;HaplotypeScore=0.734;MQ=52.28;MQ0=0;MQRankSum=-0.335;QD=10.2;ReadPosRankSum=0.272;SNPEFF_AMINO_ACID_CHANGE=T83I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:50,35:85:99:897,0,1568
11    56468155    rs11228732    T    G    590.92    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=2.96;DB;DP=107;Dels=0.0;FS=1.972;HRun=1;HaplotypeScore=0.9973;MQ=55.67;MQ0=0;MQRankSum=4.071;QD=5.52;ReadPosRankSum=0.091;SNPEFF_AMINO_ACID_CHANGE=C98G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:81,26:107:99:621,0,2517
11    56468198    rs4990194    A    G    700.13    SnpCluster    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.962;DB;DP=103;Dels=0.0;FS=0.801;HRun=0;HaplotypeScore=0.0;MQ=56.0;MQ0=0;MQRankSum=-0.167;QD=6.8;ReadPosRankSum=0.377;SNPEFF_AMINO_ACID_CHANGE=Y112C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:60,43:103:99:730,0,1836
11    56468200    rs4990195    C    T    639.59    SnpCluster    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=101;Dels=0.0;FS=1.698;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-1.808;QD=6.33;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=L113;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:59,42:101:99:670,0,1864
11    56468202    rs4990196    G    A    649.02    SnpCluster    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.929;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.08;MQ0=0;MQRankSum=0.199;QD=6.56;ReadPosRankSum=1.066;SNPEFF_AMINO_ACID_CHANGE=L113;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:59,40:99:99:679,0,1865
11    56468212    rs591369    G    A    1117.73    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=106;Dels=0.0;FS=1.711;HRun=0;HaplotypeScore=2.3259;MQ=55.77;MQ0=0;MQRankSum=-1.071;QD=10.54;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=V117M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:59,47:106:99:1148,0,1624
11    56468259    rs503776    C    T    1706.65    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=123;Dels=0.0;FS=1.5;HRun=0;HaplotypeScore=1.399;MQ=55.76;MQ0=0;MQRankSum=2.448;QD=13.88;ReadPosRankSum=-0.497;SNPEFF_AMINO_ACID_CHANGE=A132;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:64,59:123:99:1737,0,1774
11    56468368    rs11228733    C    T    1373.90    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=4.444;DB;DP=94;Dels=0.0;FS=8.59;HRun=0;HaplotypeScore=0.9973;MQ=55.16;MQ0=0;MQRankSum=-1.678;QD=14.62;ReadPosRankSum=0.951;SNPEFF_AMINO_ACID_CHANGE=R169C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:50,44:94:99:1404,0,1488
11    56468403    rs11228734    G    A    950.12    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.244;DB;DP=82;Dels=0.0;FS=7.658;HRun=0;HaplotypeScore=2.872;MQ=52.65;MQ0=0;MQRankSum=-1.858;QD=11.59;ReadPosRankSum=-2.041;SNPEFF_AMINO_ACID_CHANGE=L180;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:42,40:82:99:980,0,1333
11    56468416    rs11228735    G    A    611.69    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=79;Dels=0.0;FS=0.903;HRun=1;HaplotypeScore=0.9578;MQ=52.29;MQ0=0;MQRankSum=-4.594;QD=7.74;ReadPosRankSum=0.315;SNPEFF_AMINO_ACID_CHANGE=E185K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:46,33:79:99:642,0,1504
11    56468440    rs12421330    G    T    104.95    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=2.656;DB;DP=76;Dels=0.0;FS=19.299;HRun=0;HaplotypeScore=13.8784;MQ=51.61;MQ0=0;MQRankSum=-1.889;QD=1.38;ReadPosRankSum=-0.327;SNPEFF_AMINO_ACID_CHANGE=G193C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:63,13:76:99:135,0,1837
11    56468448    rs80194264    A    G    390.39    SnpCluster    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.655;DB;DP=82;Dels=0.0;FS=25.056;HRun=0;HaplotypeScore=12.565;MQ=51.75;MQ0=0;MQRankSum=-4.719;QD=4.76;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=K195;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:49,33:82:99:420,0,1719
11    56468449    rs78119083    A    T    402.05    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=80;Dels=0.0;FS=25.283;HRun=2;HaplotypeScore=11.5653;MQ=51.53;MQ0=0;MQRankSum=-4.85;QD=5.03;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=I196F;SNPEFF_CODON_CHANGE=Att/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:48,32:80:99:432,0,1651
11    56468452    rs79970235    A    C    600.84    SnpCluster    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=84;Dels=0.0;FS=20.728;HRun=0;HaplotypeScore=1.5774;MQ=51.64;MQ0=0;MQRankSum=-4.108;QD=7.15;ReadPosRankSum=-0.334;SNPEFF_AMINO_ACID_CHANGE=M197L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:49,35:84:99:631,0,1582
11    56468493    rs10792053    A    G    1242.06    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.005;DB;DP=110;Dels=0.0;FS=2.819;HRun=1;HaplotypeScore=1.811;MQ=55.57;MQ0=0;MQRankSum=-2.439;QD=11.29;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=A210;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:62,48:110:99:1272,0,1953
11    56468554    rs12420076    A    C    1730.63    SnpCluster    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.94;DB;DP=154;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9066;MQ=56.46;MQ0=0;MQRankSum=-1.379;QD=11.24;ReadPosRankSum=0.601;SNPEFF_AMINO_ACID_CHANGE=K231Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:80,74:154:99:1761,0,2556
11    56468560    rs10896516    T    C    1546.74    SnpCluster    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=157;Dels=0.0;FS=0.645;HRun=1;HaplotypeScore=1.9066;MQ=55.91;MQ0=0;MQRankSum=-0.043;QD=9.85;ReadPosRankSum=-0.672;SNPEFF_AMINO_ACID_CHANGE=Y233H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:76,80:157:99:1577,0,2363
11    56468561    rs10896517    A    G    1495.93    SnpCluster    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.52;DB;DP=155;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8007;MQ=56.01;MQ0=0;MQRankSum=-2.509;QD=9.65;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=Y233C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:76,79:155:99:1526,0,2395
11    56468637    rs76884192    C    T    1469.67    HaplotypeScoreFilter13;SnpCluster    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=2.668;DB;DP=157;Dels=0.0;FS=5.164;HRun=0;HaplotypeScore=43.9022;MQ=56.25;MQ0=0;MQRankSum=-1.471;QD=9.36;ReadPosRankSum=-1.478;SNPEFF_AMINO_ACID_CHANGE=Y258;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:99,58:157:99:1500,0,2829
11    56468638    rs7121276    G    T    1061.48    HaplotypeScoreFilter13;SnpCluster    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=1.297;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=43.9022;MQ=56.23;MQ0=0;MQRankSum=1.26;QD=6.8;ReadPosRankSum=-0.205;SNPEFF_AMINO_ACID_CHANGE=A259S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:112,44:156:99:1091,0,3244
11    56468646    rs78493274    C    T    1117.08    HaplotypeScoreFilter13;SnpCluster    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.055;DB;DP=146;Dels=0.0;FS=3.361;HRun=0;HaplotypeScore=41.8691;MQ=56.56;MQ0=0;MQRankSum=-1.787;QD=7.65;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=P261;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:94,52:146:99:1147,0,2974
11    56468694    rs79060400    C    T    812.69    SnpCluster    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.474;DB;DP=117;Dels=0.0;FS=6.786;HRun=0;HaplotypeScore=0.9159;MQ=53.91;MQ0=0;MQRankSum=-4.782;QD=6.95;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=Y277;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:74,43:117:99:843,0,2274
11    56468699    rs79251113    T    A    669.82    SnpCluster    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=4.016;DB;DP=110;Dels=0.0;FS=9.482;HRun=0;HaplotypeScore=0.9159;MQ=54.2;MQ0=0;MQRankSum=-4.016;QD=6.09;ReadPosRankSum=1.434;SNPEFF_AMINO_ACID_CHANGE=V279E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:72,38:110:99:700,0,2273
11    56468704    rs79288825    T    C    610.50    SnpCluster    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=101;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.9159;MQ=54.16;MQ0=0;MQRankSum=-4.797;QD=6.04;ReadPosRankSum=2.152;SNPEFF_AMINO_ACID_CHANGE=F281L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:67,34:101:99:640,0,2264
11    56468720    rs66943455    T    C    764.48    PASS    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=2.087;DB;DP=102;Dels=0.0;FS=4.706;HRun=1;HaplotypeScore=0.0;MQ=54.07;MQ0=0;MQRankSum=-4.51;QD=7.49;ReadPosRankSum=0.163;SNPEFF_AMINO_ACID_CHANGE=L286P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56467864_56468781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:65,37:102:99:794,0,2024
11    56468817    rs74605930    G    T    48.40    QDFilter2    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.559;DB;DP=34;Dels=0.0;FS=2.982;HRun=0;HaplotypeScore=0.0;MQ=50.12;MQ0=0;MQRankSum=-4.775;QD=1.42;ReadPosRankSum=-0.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:22,12:34:78.40:78,0,767
11    56468828    rs530142    G    C    69.17    SnpCluster    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.485;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.34;MQ0=0;MQRankSum=-4.293;QD=2.56;ReadPosRankSum=-2.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:17,10:27:99:99,0,609
11    56468832    rs79579174    G    T    38.75    QDFilter2;SnpCluster    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.95;MQ0=0;MQRankSum=-4.15;QD=1.49;ReadPosRankSum=-2.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:17,9:26:68.74:69,0,595
11    56468835    rs588308    G    T    38.74    QDFilter2;SnpCluster    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.808;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.95;MQ0=0;MQRankSum=-4.15;QD=1.49;ReadPosRankSum=-2.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:17,9:26:68.73:69,0,609
11    56468877    rs78888610    G    A    31.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.41;MQ0=0;MQRankSum=-2.383;QD=3.15;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312153    GT:AD:DP:GQ:PL    0/1:6,4:10:61.47:61,0,216
11    56504593    rs534460    G    C    435.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-100N3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525668    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:469,36,0
11    56510066    rs674188    G    A    213.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302957    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
11    56510243    rs11228762    A    G    656.48    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.35;DB;DP=51;Dels=0.0;FS=6.407;HRun=0;HaplotypeScore=2.3122;MQ=59.55;MQ0=0;MQRankSum=1.335;QD=12.87;ReadPosRankSum=0.672;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302957    GT:AD:DP:GQ:PL    0/1:28,23:51:99:686,0,869
11    56510623    rs513873    A    G    831.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=40;Dels=0.0;FS=3.211;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.087;QD=20.8;ReadPosRankSum=0.909;SNPEFF_AMINO_ACID_CHANGE=V222A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56510303_56511287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302957    GT:AD:DP:GQ:PL    0/1:13,26:40:99:862,0,355
11    56510672    rs577576    T    C    1186.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9874;MQ=59.19;MQ0=0;QD=38.28;SNPEFF_AMINO_ACID_CHANGE=N206D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56510303_56511287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302957    GT:AD:DP:GQ:PL    1/1:0,31:31:93.30:1220,93,0
11    56510694    rs1397053    T    C    655.55    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=33;Dels=0.0;FS=3.583;HRun=0;HaplotypeScore=0.0;MQ=58.53;MQ0=0;MQRankSum=2.216;QD=19.87;ReadPosRankSum=0.549;SNPEFF_AMINO_ACID_CHANGE=P198;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_56510303_56511287;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9G4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302957    GT:AD:DP:GQ:PL    0/1:10,23:33:99:686,0,313
11    56542928    rs1943639    G    A    1807.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.499;DB;DP=124;Dels=0.0;FS=0.681;HRun=1;HaplotypeScore=2.812;MQ=59.14;MQ0=0;MQRankSum=-0.494;QD=14.58;ReadPosRankSum=-0.955;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-100N3.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326910    GT:AD:DP:GQ:PL    0/1:62,62:124:99:1838,0,1987
11    56570067    rs7121576    A    G    942.22    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.745;DB;DP=72;Dels=0.0;FS=8.378;HRun=0;HaplotypeScore=1.9203;MQ=60.0;MQ0=0;MQRankSum=-0.464;QD=13.09;ReadPosRankSum=0.041;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5G5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378368    GT:AD:DP:GQ:PL    0/1:34,38:72:99:972,0,1042
11    56570386    rs548739    G    A    283.34    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.184;QD=14.91;ReadPosRankSum=-0.531;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5G5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378368    GT:AD:DP:GQ:PL    0/1:9,10:19:99:313,0,312
11    56950264    rs609763    A    G    549.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497933    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:583,45,0
11    57004344    rs948847    G    T    1450.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_AMINO_ACID_CHANGE=G10;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57004137_57004452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APLNR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444275    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1484,111,0
11    57085213    rs10896604    G    A    68.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.02;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TNKS1BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527207    GT:AD:DP:GQ:PL    0/1:1,3:4:20.46:98,0,20
11    57095082    rs7129491    C    G    741.91    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.47;DB;DP=62;Dels=0.0;FS=2.177;HRun=0;HaplotypeScore=0.9665;MQ=58.88;MQ0=0;MQRankSum=-0.059;QD=11.97;ReadPosRankSum=0.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526696    GT:AD:DP:GQ:PL    0/1:33,29:62:99:772,0,1107
11    57095574    rs66774208    CAGA    C    186.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=37.8899;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=-0.47;QD=18.68;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526696    GT:AD:DP:GQ:PL    0/1:5,5:10:99:226,0,316
11    57097924    rs10896605    G    A    191.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.771;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.234;QD=7.99;ReadPosRankSum=1.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526696    GT:AD:DP:GQ:PL    0/1:16,8:24:99:222,0,496
11    57100351    rs7106462    G    A    607.23    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.499;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.693;QD=18.4;ReadPosRankSum=0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278412    GT:AD:DP:GQ:PL    0/1:13,20:33:99:637,0,365
11    57102096    rs2230649    A    G    1223.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=4.675;DB;DP=99;Dels=0.0;FS=3.042;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.544;QD=12.36;ReadPosRankSum=-0.251;SNPEFF_AMINO_ACID_CHANGE=R27;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57101937_57102122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278412    GT:AD:DP:GQ:PL    0/1:55,44:99:99:1253,0,1688
11    57135663    rs78580111    A    AG    368.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=50.1859;IndelType=I;MQ=59.06;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=P2RX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263314    GT:AD:DP:GQ:PL    1/1:3,10:13:30.10:410,30,0
11    57136163    rs4245214    T    C    88.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=P2RX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263314    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
11    57136172    rs4938864    C    T    42.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=P2RX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263314    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:72,0,23
11    57137296    rs2276040    G    A    511.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=P2RX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263314    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:544,42,0
11    57137538    rs74770235    A    AG    368.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=4;HaplotypeScore=33.2897;IndelType=I;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=P2RX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263314    GT:AD:DP:GQ:PL    1/1:2,10:12:30.10:411,30,0
11    57144152    rs1867126    G    C    253.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287143    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
11    57144500    rs10896613    G    C    202.78    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.847;QD=11.93;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287143    GT:AD:DP:GQ:PL    0/1:10,7:17:99:233,0,323
11    57146479    rs514861    G    A    304.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287143    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:337,27,0
11    57147016    rs540687    A    G    3466.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.2516;MQ=58.95;MQ0=0;QD=31.51;SNPEFF_AMINO_ACID_CHANGE=I109T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57146967_57147280;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287143    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3466,259,0
11    57147353    rs544079    G    C    326.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287143    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:359,27,0
11    57148175    rs669661    A    G    120.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.1;SNPEFF_AMINO_ACID_CHANGE=C3R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57148121_57148254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287143    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
11    57155001    rs536455    G    A    1357.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_AMINO_ACID_CHANGE=H195Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57154288_57155006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533605    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1390,102,0
11    57155288    rs630396    T    C    207.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.96;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57155227_57155338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533605    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:241,18,0
11    57156438    rs3741089    A    G    692.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-872D17.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528835    GT:AD:DP:GQ:PL    1/1:0,25:25:60.17:726,60,0
11    57157405    rs490358    A    G    1010.89    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.613;DB;DP=113;Dels=0.0;FS=0.731;HRun=4;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=8.95;ReadPosRankSum=0.49;SNPEFF_AMINO_ACID_CHANGE=L110;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57157360_57157429;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-872D17.8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529411    GT:AD:DP:GQ:PL    0/1:67,46:113:99:1041,0,2057
11    57176628    rs2241899    C    T    1253.01    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.401;DB;DP=83;Dels=0.0;FS=0.823;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.524;QD=15.1;ReadPosRankSum=0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RP11-872D17.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529411    GT:AD:DP:GQ:PL    0/1:43,40:83:99:1283,0,1372
11    57184218    rs4938865    C    T    517.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TEC;SNPEFF_GENE_NAME=SLC43A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525474    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:551,42,0
11    57243588    rs2258835    A    G    1907.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4RL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335099    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1941,144,0
11    57254351    rs2439889    A    G    174.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529452    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:208,18,0
11    57258617    rs2729384    T    C    199.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529452    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:232,18,0
11    57265400    rs2581922    C    T    122.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533263    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
11    57268170    rs2250673    T    C    525.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533263    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:559,42,0
11    57313469    rs12223229    C    G    239.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=34;Dels=0.0;FS=4.041;HRun=3;HaplotypeScore=1.7219;MQ=59.32;MQ0=0;MQRankSum=1.459;QD=7.05;ReadPosRankSum=-0.414;SNPEFF_AMINO_ACID_CHANGE=R308G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57313354_57313509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399154    GT:AD:DP:GQ:PL    0/1:17,17:34:99:270,0,484
11    57313659    rs2649658    G    A    125.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399154    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:158,12,0
11    57320044    rs2234412    T    C    454.52    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.156;DB;DP=34;Dels=0.0;FS=2.285;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.57;QD=13.37;ReadPosRankSum=0.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399154    GT:AD:DP:GQ:PL    0/1:18,16:34:99:485,0,610
11    57321811    rs2234409    T    G    221.26    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=17.02;ReadPosRankSum=-1.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399154    GT:AD:DP:GQ:PL    0/1:5,8:13:99:251,0,164
11    57367222    rs1005510    C    T    501.32    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.069;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.405;QD=22.79;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPING1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278407    GT:AD:DP:GQ:PL    0/1:6,16:22:99:531,0,180
11    57369730    rs11229063    G    A    124.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=12.41;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPING1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405496    GT:AD:DP:GQ:PL    0/1:5,5:10:99:154,0,179
11    57379170    rs2511988    A    G    1496.51    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.376;DB;DP=96;Dels=0.0;FS=4.17;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.518;QD=15.59;ReadPosRankSum=0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPING1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278407    GT:AD:DP:GQ:PL    0/1:46,50:96:99:1527,0,1303
11    57381989    rs4926    G    A    443.13    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=36;Dels=0.0;FS=3.154;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.733;QD=12.31;ReadPosRankSum=-0.642;SNPEFF_AMINO_ACID_CHANGE=V428M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57381801_57382320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPING1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378324    GT:AD:DP:GQ:PL    0/1:21,15:36:99:473,0,654
11    57413943    rs12793139    C    G    34.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=5.71;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=YPEL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529776    GT:AD:DP:GQ:PL    0/1:4,2:6:64.27:64,0,131
11    57414387    rs7947357    A    G    272.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=YPEL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531442    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:305,24,0
11    57456244    rs549022    C    T    117.71    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.82;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287169    GT:AD:DP:GQ:PL    0/1:2,5:7:52.07:148,0,52
11    57461473    rs35069937    GT    G    60.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=12;FS=0.0;HRun=17;HaplotypeScore=61.7448;IndelType=D;MQ=58.05;MQ0=0;MQRankSum=-0.751;QD=5.02;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528177    GT:AD:DP:GQ:PL    1/1:5,6:12:1.47:98,1,0
11    57463500    rs1783978    T    C    1163.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.63;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=L166;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57463392_57463515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529447    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1197,93,0
11    57472166    .    TGC    T    162.63    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.916;DP=56;FS=44.752;HRun=0;HaplotypeScore=483.0796;IndelType=D;MQ=42.27;MQ0=0;MQRankSum=-2.216;QD=2.9;ReadPosRankSum=-3.201;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534677    GT:AD:DP:GQ:PL    0/1:36,15:56:99:202,0,1164
11    57507983    rs4827    C    T    249.97    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=19;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=13.16;ReadPosRankSum=0.612;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422652    GT:AD:DP:GQ:PL    0/1:10,9:19:99:280,0,287
11    57509429    rs635663    A    G    547.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422652    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:580,45,0
11    57569828    rs514691    A    T    551.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533189    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:585,45,0
11    57571232    rs11229137    C    T    2827.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=38.21;SNPEFF_AMINO_ACID_CHANGE=H197;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57571093_57571276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525902    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2861,214,0
11    57571883    rs10896647    C    T    77.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.27;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527599    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:107,0,29
11    57573699    rs150073075    TTGG    T    164.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=51.7951;IndelType=D;MQ=58.46;MQ0=0;QD=20.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527599    GT:AD:DP:GQ:PL    1/1:3,5:8:15.05:207,15,0
11    57577096    rs612688    A    G    79.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.93;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530720    GT:AD:DP:GQ:PL    0/1:2,3:5:64.17:110,0,64
11    57581613    rs623541    C    A    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358694    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    57685473    rs621731    A    G    980.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.7465;MQ=59.23;MQ0=0;QD=32.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR5AZ1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319748    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1013,78,0
11    57685502    rs621683    C    G    938.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR5AZ1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319748    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:972,72,0
11    57798723    rs921135    A    G    1833.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=59.17;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=D100G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57798402_57799403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6Q1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302622    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1866,141,0
11    57798942    rs2513726    A    G    1954    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=30.06;SNPEFF_AMINO_ACID_CHANGE=Y173C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57798402_57799403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6Q1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302622    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1987,147,0
11    57947264    rs11229273    C    G    330.86    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.777;DB;DP=49;Dels=0.0;FS=9.652;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.383;QD=6.75;ReadPosRankSum=0.055;SNPEFF_AMINO_ACID_CHANGE=A116;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57946903_57949088;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9Q1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335397    GT:AD:DP:GQ:PL    0/1:35,14:49:99:361,0,1142
11    57958775    rs7120468    C    T    2019.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=D271;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57957906_57958990;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9Q2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311591    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2052,150,0
11    57958972    rs1451317    C    A    785.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR9Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311591    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:818,63,0
11    57971171    .    C    T    225.33    QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=2.577;DP=113;Dels=0.0;FS=43.635;HRun=0;HaplotypeScore=2.3586;MQ=56.84;MQ0=0;MQRankSum=-4.633;QD=1.99;ReadPosRankSum=-1.173;SNPEFF_AMINO_ACID_CHANGE=S161;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57970674_57971653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302592    GT:AD:DP:GQ:PL    0/1:95,18:113:99:255,0,3022
11    57971195    rs11229279    G    A    3072.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DB;DP=102;Dels=0.0;FS=18.255;HRun=2;HaplotypeScore=3.5657;MQ=57.44;MQ0=0;MQRankSum=4.466;QD=30.12;ReadPosRankSum=3.259;SNPEFF_AMINO_ACID_CHANGE=F153;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57970674_57971653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302592    GT:AD:DP:GQ:PL    1/1:8,94:102:35.55:3105,36,0
11    57971201    rs11229280    G    A    3289.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=99;Dels=0.0;FS=12.271;HRun=0;HaplotypeScore=0.5784;MQ=57.82;MQ0=0;MQRankSum=3.646;QD=33.23;ReadPosRankSum=3.222;SNPEFF_AMINO_ACID_CHANGE=A151;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57970674_57971653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302592    GT:AD:DP:GQ:PL    1/1:6,93:99:99:3289,196,0
11    57982034    rs1817072    G    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    57982229    rs1966836    A    G    2631.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=59.42;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=S5G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57982217_57983195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:1,79:80:99:2665,196,0
11    57982584    rs1966835    T    C    4071.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.44;MQ0=1;QD=35.1;SNPEFF_AMINO_ACID_CHANGE=I123T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57982217_57983195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:0,115:115:99:4071,301,0
11    57982620    rs1966834    A    G    3401.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9152;MQ=55.22;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=H135R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57982217_57983195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3401,265,0
11    57982726    rs1993089    G    T    2176.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=43.07;MQ0=8;QD=29.81;SNPEFF_AMINO_ACID_CHANGE=L170;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57982217_57983195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2209,178,0
11    57982763    rs1993088    A    G    873.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5767;MQ=27.38;MQ0=9;QD=19.86;SNPEFF_AMINO_ACID_CHANGE=N183D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57982217_57983195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:0,44:44:81.22:907,81,0
11    57982832    rs2867400    T    A    975.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.75;MQ0=8;QD=24.38;SNPEFF_AMINO_ACID_CHANGE=L206M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57982217_57983195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:0,40:40:81.25:1008,81,0
11    57982896    rs2903566    G    T    1520.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=51.81;MQ0=3;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=S227I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57982217_57983195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1554,117,0
11    57983194    rs7103033    A    G    3786.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=56.39;MQ0=0;QD=32.09;SNPEFF_AMINO_ACID_CHANGE=*326W;SNPEFF_CODON_CHANGE=tgA/tgG;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_11_57982217_57983195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1S1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000309433    GT:AD:DP:GQ:PL    1/1:0,116:117:99:3787,274,0
11    57996312    rs4245219    C    G    4520.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DB;DP=140;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=58.8;MQ0=0;MQRankSum=0.619;QD=32.29;ReadPosRankSum=-0.668;SNPEFF_AMINO_ACID_CHANGE=E12D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_57995354_57996390;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10Q1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316770    GT:AD:DP:GQ:PL    1/1:1,139:140:99:4521,346,0
11    58034543    rs10792156    C    T    1380.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=37.32;SNPEFF_AMINO_ACID_CHANGE=R263Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_58034264_58035732;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10W1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395079    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1414,105,0
11    58125620    rs4127353    T    C    1834.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=34.61;SNPEFF_AMINO_ACID_CHANGE=Y308C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_58125597_58126542;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5B17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357377    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1867,135,0
11    58126305    rs4939208    A    T    1162.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.2;SNPEFF_AMINO_ACID_CHANGE=L80I;SNPEFF_CODON_CHANGE=Tta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_58125597_58126542;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5B17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357377    GT:AD:DP:GQ:PL    1/1:0,34:34:93.29:1196,93,0
11    58170792    .    AG    A    983.75    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=6.588;DP=81;FS=0.839;HRun=4;HaplotypeScore=187.1972;IndelType=D;MQ=59.98;MQ0=0;MQRankSum=1.061;QD=12.15;ReadPosRankSum=-0.952;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_58169937_58170882;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5B3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000309403    GT:AD:DP:GQ:PL    0/1:46,35:81:99:1023,0,1607
11    58190867    rs4373953    T    C    115.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.92;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302581    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
11    58207204    rs4938895    A    G    1595.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.24;MQ0=0;QD=29.01;SNPEFF_AMINO_ACID_CHANGE=C141R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_58206593_58207646;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5B12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302572    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1629,123,0
11    58295748    rs35632700    TCA    T    1513.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=115.2793;IndelType=D;MQ=61.94;MQ0=0;QD=45.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395074    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1555,99,0
11    58318619    rs1047979    C    G    1610.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=30.96;SNPEFF_AMINO_ACID_CHANGE=L135;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_58318538_58318705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPXN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395074    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1643,126,0
11    58380192    rs35224542    C    CT    980.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.576;DB;DP=53;FS=0.0;HRun=12;HaplotypeScore=208.4315;IndelType=I;MQ=57.37;MQ0=0;MQRankSum=2.178;QD=18.49;ReadPosRankSum=-1.827;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316059    GT:AD:DP:GQ:PL    1/1:15,37:53:57.29:1022,57,0
11    58478026    rs675423    G    A    2124.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344743    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2157,169,0
11    58478039    rs675757    T    C    2419.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344743    GT:AD:DP:GQ:PL    1/1:0,68:69:99:2452,178,0
11    58478084    rs675815    T    C    3045.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=N156S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_58477556_58478234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278400    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3079,226,0
11    58492073    rs10535978    GTT    G    177.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.262;DB;DP=15;FS=0.0;HRun=12;HaplotypeScore=63.3084;IndelType=D;MQ=55.53;MQ0=0;MQRankSum=-0.566;QD=11.85;ReadPosRankSum=-0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278400    GT:AD:DP:GQ:PL    1/1:3,8:15:5.17:218,5,0
11    58605922    rs10896850    A    G    217.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYATL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287275    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
11    58715513    rs11229707    T    G    205.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLYATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531245    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
11    58715624    rs541312    T    C    115.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5634;MQ=47.12;MQ0=0;QD=28.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLYATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531245    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
11    58939811    rs3110104    A    G    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532982    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
11    58962910    rs3841744    TA    T    196.09    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=3.706;DB;DP=38;FS=2.663;HRun=5;HaplotypeScore=90.3095;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.018;QD=5.16;ReadPosRankSum=0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531902    GT:AD:DP:GQ:PL    0/1:28,10:38:99:235,0,920
11    59056153    rs1894123    C    T    97.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.08;MQ0=0;QD=24.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-1036E20.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532980    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:130,12,0
11    59132798    rs7941190    G    C    1705.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=37.9;SNPEFF_AMINO_ACID_CHANGE=L289F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59131885_59132921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313940    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1739,126,0
11    59132882    rs10896964    A    G    386.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313940    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:420,33,0
11    59159600    rs2219071    A    G    1755.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=34.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR5BB1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528843    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1788,132,0
11    59189226    .    G    A    33.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=8.47;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302040    GT:AD:DP:GQ:PL    0/1:2,2:4:55.64:64,0,56
11    59189233    rs9988851    G    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302040    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    59189282    rs35209156    C    CA    347.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=34.7055;IndelType=I;MQ=60.0;MQ0=0;QD=38.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302040    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:389,27,0
11    59189405    rs9988824    T    C    2025.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5518;MQ=58.66;MQ0=0;QD=38.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302040    GT:AD:DP:GQ:PL    1/1:0,52:52:99:2059,153,0
11    59210480    rs7948562    C    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302030    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    59210550    rs7947825    G    A    300.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302030    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:334,27,0
11    59211188    rs6591536    G    A    4249.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5033;MQ=59.63;MQ0=0;QD=34.0;SNPEFF_AMINO_ACID_CHANGE=D183N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59210617_59211667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302030    GT:AD:DP:GQ:PL    1/1:0,125:125:99:4250,325,0
11    59211265    rs7941591    T    C    2337.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=T208;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59210617_59211667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302030    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2370,193,0
11    59224720    rs1453543    A    G    4352.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8279;MQ=59.66;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=D96G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59224411_59225464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300127    GT:AD:DP:GQ:PL    1/1:0,133:134:99:4353,325,0
11    59259846    rs3862659    C    T    1846.95    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.376;DB;DP=145;Dels=0.0;FS=0.619;HRun=0;HaplotypeScore=1.3123;MQ=59.68;MQ0=0;MQRankSum=-0.518;QD=12.74;ReadPosRankSum=-0.481;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4D8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431137    GT:AD:DP:GQ:PL    0/1:80,65:145:99:1877,0,2563
11    59272052    rs139971412    G    A    89.28    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.05;MQ0=0;MQRankSum=-0.289;QD=7.44;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313253    GT:AD:DP:GQ:PL    0/1:8,4:12:99:119,0,269
11    59282861    rs17501584    A    G    999.03    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.802;DB;DP=79;Dels=0.0;FS=8.652;HRun=1;HaplotypeScore=1.6828;MQ=59.47;MQ0=0;MQRankSum=0.5;QD=12.65;ReadPosRankSum=0.68;SNPEFF_AMINO_ACID_CHANGE=Q159R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59282386_59283330;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329328    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1029,0,1113
11    59344047    .    G    A    1579.38    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=4.295;DP=117;Dels=0.0;FS=4.731;HRun=0;HaplotypeScore=0.9933;MQ=59.61;MQ0=0;MQRankSum=0.574;QD=13.5;ReadPosRankSum=0.356;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263847    GT:AD:DP:GQ:PL    0/1:61,56:117:99:1609,0,1600
11    59369401    rs7106463    A    G    294.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263847    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:327,27,0
11    59480951    rs499033    T    C    822.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_AMINO_ACID_CHANGE=Q123R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59480296_59481337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10V1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307552    GT:AD:DP:GQ:PL    1/1:0,27:28:69.18:856,69,0
11    59807978    rs79964989    G    A    1286.84    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=1.003;DB;DP=79;Dels=0.0;FS=12.11;HRun=0;HaplotypeScore=1.994;MQ=59.42;MQ0=0;MQRankSum=-0.287;QD=16.29;ReadPosRankSum=0.086;SNPEFF_AMINO_ACID_CHANGE=G16S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59807748_59807996;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAC1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278855    GT:AD:DP:GQ:PL    0/1:34,45:79:99:1317,0,1007
11    59829678    rs507035    G    C    41.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526199    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:71,0,34
11    59829741    rs506846    A    G    106.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526199    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
11    59829804    rs506053    C    T    72.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.07;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526199    GT:AD:DP:GQ:PL    0/1:4,3:8:99:103,0,145
11    59830103    rs481950    A    G    938    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.49;DB;DP=68;Dels=0.0;FS=8.02;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.542;QD=13.79;ReadPosRankSum=-0.745;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526199    GT:AD:DP:GQ:PL    0/1:36,32:68:99:968,0,1073
11    59830198    rs533855    T    C    130.48    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.973;QD=6.87;ReadPosRankSum=1.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526199    GT:AD:DP:GQ:PL    0/1:13,6:19:99:160,0,465
11    59831930    rs1286170    G    A    189.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.94;MQ0=0;QD=31.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526199    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:222,18,0
11    59831948    rs35768985    C    CAGA    324.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=36.9219;IndelType=I;MQ=57.94;MQ0=0;QD=54.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526199    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:366,18,0
11    59834298    rs12221875    G    C    234.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528298    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:267,21,0
11    59836887    rs2298584    A    G    726.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278865    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:760,57,0
11    59837577    rs10897003    T    A    243.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278865    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
11    59857581    rs2583476    G    A    41.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524868    GT:AD:DP:GQ:PL    0/1:2,2:4:57.44:71,0,57
11    59858036    rs2847663    C    G    219.14    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.337;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.299;QD=12.89;ReadPosRankSum=-1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524868    GT:AD:DP:GQ:PL    0/1:8,9:17:99:249,0,286
11    59860178    rs502581    G    T    237.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524868    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
11    59863104    rs569108    A    G    360.80    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=33;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=10.93;ReadPosRankSum=0.054;SNPEFF_AMINO_ACID_CHANGE=E237G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59863031_59863444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278888    GT:AD:DP:GQ:PL    0/1:16,17:33:99:391,0,469
11    59940396    rs595718    A    G    1884.47    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.38;MQ0=0;QD=33.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527254    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1917,168,0
11    59940400    rs2044979    C    T    1951.27    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.61;MQ0=0;QD=33.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527254    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1984,162,0
11    59940403    rs2044978    A    G    1941.30    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.88;MQ0=0;QD=31.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527254    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1974,165,0
11    59940407    rs592346    A    G    2198.57    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.35;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527254    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2232,184,0
11    59940599    rs7232    T    A    3193.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.017;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=55.96;MQ0=0;MQRankSum=1.137;QD=31.94;ReadPosRankSum=0.962;SNPEFF_AMINO_ACID_CHANGE=T140S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59939544_59940602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426738    GT:AD:DP:GQ:PL    1/1:1,99:100:99:3227,212,0
11    59942815    rs7935829    A    G    139.05    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=17.38;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525549    GT:AD:DP:GQ:PL    0/1:1,7:8:20.20:169,0,20
11    59943109    rs2278867    A    T    870.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=36.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525549    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:904,66,0
11    59945564    rs2243987    T    G    208.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526677    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
11    59945745    rs12453    T    C    2336.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.828;QD=33.87;ReadPosRankSum=0.226;SNPEFF_AMINO_ACID_CHANGE=L109;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_59945733_59945789;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323961    GT:AD:DP:GQ:PL    1/1:1,68:69:99:2370,175,0
11    59997335    rs608659    T    C    773.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MS4A4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398984    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:806,60,0
11    60073597    rs4644658    C    T    1421.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=L138;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60073573_60073674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000532114    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1455,111,0
11    60073702    rs3018806    A    T    782.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=35.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527056    GT:AD:DP:GQ:PL    1/1:0,22:22:63.17:815,63,0
11    60107660    rs11230281    A    C    165.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=27.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530509    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
11    60107673    rs10897051    A    T    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=24.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530509    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
11    60152563    rs950803    T    A    2815.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=58.91;MQ0=0;QD=34.76;SNPEFF_AMINO_ACID_CHANGE=T50;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60152561_60152695;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300184    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2849,208,0
11    60157107    rs2233252    T    G    886.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=36.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528215    GT:AD:DP:GQ:PL    1/1:0,24:24:72.16:919,72,0
11    60157166    rs2233253    C    T    282.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528215    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:316,24,0
11    60161527    rs1062167    A    G    91.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9992;MQ=60.0;MQ0=0;QD=15.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528587    GT:AD:DP:GQ:PL    1/1:0,6:6:14.97:124,15,0
11    60163958    rs6591579    G    A    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300184    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
11    60164204    rs2241920    G    A    593.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532756    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:626,45,0
11    60164302    rs2241921    C    T    76.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A6E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532756    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
11    60165352    rs77630012    ATT    A    1849.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=2;HaplotypeScore=141.6148;IndelType=D;MQ=61.34;MQ0=0;QD=46.24;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_60165325_60165453;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A14;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000300187    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1892,117,0
11    60172087    rs10750937    C    T    2034.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531949    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2067,150,0
11    60182970    rs7131283    A    T    2614.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=N160Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60182910_60185161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395005    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2648,196,0
11    60184191    rs3825020    G    A    2456.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=35.1;SNPEFF_AMINO_ACID_CHANGE=G472R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60182910_60185161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531787    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2490,184,0
11    60201232    rs3763845    T    C    1147.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300190    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1181,87,0
11    60215066    rs12787520    C    A    784.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300190    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:817,60,0
11    60231986    rs4146870    G    A    129.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524807    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
11    60264629    rs7109412    C    T    410.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000016913    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:443,36,0
11    60264755    rs2298551    G    A    2230.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000016913    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2264,166,0
11    60264947    rs2298552    C    T    2142.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_AMINO_ACID_CHANGE=Y52;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60264786_60265067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000016913    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2176,160,0
11    60265002    rs2298553    C    T    1578.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.32;SNPEFF_AMINO_ACID_CHANGE=Q71*;SNPEFF_CODON_CHANGE=Caa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_60264786_60265067;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000016913    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1612,117,0
11    60265164    rs2298554    G    A    253.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000016913    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
11    60268293    rs4939382    T    C    185.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525951    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:219,18,0
11    60268679    rs2186918    G    C    2020.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525951    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2053,150,0
11    60268736    rs2298555    C    A    885.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525951    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:919,69,0
11    60269240    rs2155710    T    C    105.82    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=0.731;QD=21.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525951    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:136,0,26
11    60271325    rs2298556    A    T    1019.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530007    GT:AD:DP:GQ:PL    1/1:0,33:33:81.26:1053,81,0
11    60274393    rs2298558    G    A    1290.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=39.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526784    GT:AD:DP:GQ:PL    1/1:0,33:33:96.32:1324,96,0
11    60274640    rs2298559    T    C    556.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526784    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:590,48,0
11    60285575    rs10736706    A    G    1535.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=I7V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60285545_60285685;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378185    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1568,123,0
11    60291413    rs6591595    C    T    819.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.02;SNPEFF_AMINO_ACID_CHANGE=P58L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60291370_60291426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378185    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:852,63,0
11    60309947    rs4939400    A    T    644.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378185    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:677,51,0
11    60310083    rs11230378    A    T    135.02    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=22;Dels=0.0;FS=2.154;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.334;QD=6.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378185    GT:AD:DP:GQ:PL    0/1:13,9:22:99:165,0,414
11    60504636    .    C    T    88.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=8.86;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398983    GT:AD:DP:GQ:PL    0/1:6,4:10:99:119,0,214
11    60531264    rs12363342    A    G    2419.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=31.83;SNPEFF_AMINO_ACID_CHANGE=S20G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60531179_60531431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405633    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2452,193,0
11    60542953    rs7120524    C    T    310.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337911    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:343,27,0
11    60543367    rs17628721    C    G    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528170    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    60557693    rs474435    T    C    590.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:624,45,0
11    60558375    rs11602321    A    G    1488.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.379;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=30.37;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:1,48:49:90.12:1521,90,0
11    60559805    rs931861    A    G    1665.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1698,126,0
11    60561613    rs751026    C    T    1348.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1381,102,0
11    60562911    rs566457    A    G    238.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
11    60562975    rs4939457    G    A    573.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:606,45,0
11    60567230    rs11230483    C    T    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
11    60567275    rs579967    G    A    82.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
11    60567525    rs71997819    CCTGGG    C    1019.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=154.3451;IndelType=D;MQ=36.72;MQ0=0;QD=63.69;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:1061,48,0
11    60567534    rs74932478    G    C    228.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.05;MQ0=0;QD=12.69;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,18:18:24.06:261,24,0
11    60567589    rs10792292    G    A    183.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=26.27;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MS4A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308287    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:217,18,0
11    60609972    rs2074422    A    G    719.14    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=44;Dels=0.0;FS=1.263;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.2;QD=16.34;ReadPosRankSum=0.147;SNPEFF_AMINO_ACID_CHANGE=P125;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60609544_60610355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC86;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227520    GT:AD:DP:GQ:PL    0/1:19,25:44:99:749,0,502
11    60617646    rs495949    T    C    1284.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=27.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332539    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1317,99,0
11    60617834    rs530963    C    A    705    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332539    GT:AD:DP:GQ:PL    1/1:0,22:22:60.16:738,60,0
11    60617942    rs493176    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332539    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    60620585    rs2467642    A    G    239.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=26.65;SNPEFF_AMINO_ACID_CHANGE=V204A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60618413_60621204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR44;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332539    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:273,24,0
11    60620590    rs2428461    C    G    313.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.36;SNPEFF_AMINO_ACID_CHANGE=R202;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60618413_60621204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR44;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332539    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:347,27,0
11    60635091    rs550479    T    C    473.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=27.87;SNPEFF_AMINO_ACID_CHANGE=V19;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60635035_60635230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278853    GT:AD:DP:GQ:PL    1/1:0,17:17:42.09:507,42,0
11    60637164    rs489172    C    T    969.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=27.7;SNPEFF_AMINO_ACID_CHANGE=T158I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60637010_60637373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278853    GT:AD:DP:GQ:PL    1/1:0,35:35:75.25:1003,75,0
11    60638470    rs566411    A    G    5266.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5983;MQ=59.85;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=V289;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60638430_60638617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278853    GT:AD:DP:GQ:PL    1/1:0,157:157:99:5266,391,0
11    60638753    rs117566381    C    A    532.98    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=36;Dels=0.0;FS=3.041;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.095;QD=14.8;ReadPosRankSum=1.584;SNPEFF_AMINO_ACID_CHANGE=P360T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60638690_60638787;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278853    GT:AD:DP:GQ:PL    0/1:17,19:36:99:563,0,485
11    60640480    rs2072098    C    A    620.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278853    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:653,48,0
11    60642325    rs2074418    G    A    681.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542971    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:714,54,0
11    60658566    rs56955516    ACC    A    245.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=11;HaplotypeScore=40.0467;IndelType=D;MQ=60.0;MQ0=0;QD=24.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540473    GT:AD:DP:GQ:PL    1/1:1,9:10:27.07:287,27,0
11    60666116    rs3763841    G    T    889.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546152    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:922,69,0
11    60666341    rs3763840    G    A    293.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=36.65;SNPEFF_AMINO_ACID_CHANGE=S21;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60666334_60666403;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535326    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
11    60669197    rs476182    T    C    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227524    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    60670846    rs2240045    C    T    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227524    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    60673868    rs17155470    T    C    101.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=16.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540473    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:134,12,0
11    60687572    rs4939478    G    C    172.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227525    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
11    60689445    rs555835    T    C    1368.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.51;MQ0=0;QD=29.11;SNPEFF_AMINO_ACID_CHANGE=P102;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60689246_60689518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM109;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540407    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1401,114,0
11    60695301    rs575123    C    A    738.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.11;MQ0=0;QD=28.4;SNPEFF_AMINO_ACID_CHANGE=A168;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60695113_60695331;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005286    GT:AD:DP:GQ:PL    1/1:0,25:26:63.16:771,63,0
11    60695375    rs575955    A    G    283.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227525    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
11    60696554    rs139814160    CAAACT    C    455.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=52.8114;IndelType=D;MQ=54.65;MQ0=0;QD=50.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537065    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:498,24,0
11    60697905    rs4939480    T    C    4639.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.4258;MQ=59.5;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537065    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4639,355,0
11    60698054    rs2074416    G    A    2565.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=59.38;MQ0=0;QD=34.2;SNPEFF_AMINO_ACID_CHANGE=L313;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60697982_60698131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005286    GT:AD:DP:GQ:PL    1/1:0,73:74:99:2598,196,0
11    60700864    rs534125    C    T    112.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227880    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:145,12,0
11    60700950    rs616270    C    G    77.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227880    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:109,9,0
11    60700991    rs512233    A    G    201.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227880    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:235,18,0
11    60701136    rs9513    C    G    88.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.76;SNPEFF_AMINO_ACID_CHANGE=P244;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60701014_60701216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444690    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:121,12,0
11    60702346    rs555622    G    T    102.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=20.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227880    GT:AD:DP:GQ:PL    1/1:0,5:5:15:135,15,0
11    60702347    rs55657433    A    T    102.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=20.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227880    GT:AD:DP:GQ:PL    1/1:0,5:5:15:135,15,0
11    60703260    rs525574    A    G    1405.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=37.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227880    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1438,105,0
11    60704213    rs2469887    C    T    394.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=26.29;SNPEFF_AMINO_ACID_CHANGE=A720V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60703336_60704628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444690    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:427,33,0
11    60705454    rs2905692    A    G    1036.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.03;SNPEFF_AMINO_ACID_CHANGE=G1;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60705342_60705456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536784    GT:AD:DP:GQ:PL    1/1:0,37:37:84.22:1070,84,0
11    60706864    rs554397    G    A    276.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536491    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:310,24,0
11    60707243    rs515587    G    A    71.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536491    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:104,9,0
11    60776103    rs61899223    T    C    262.25    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=29.14;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=T189;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60776006_60776317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313421    GT:AD:DP:GQ:PL    0/1:1,8:9:14.14:292,0,14
11    60776209    rs11230563    C    T    264.54    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=26.45;ReadPosRankSum=1.271;SNPEFF_AMINO_ACID_CHANGE=R225W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60776006_60776317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313421    GT:AD:DP:GQ:PL    0/1:2,8:10:51.67:295,0,52
11    60776334    rs2905518    A    G    162.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538288    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:195,15,0
11    60783108    rs2074229    C    T    1098.75    PASS    AB=0.365;AC=1;AF=0.50;AN=2;BaseQRankSum=2.638;DB;DP=53;Dels=0.0;FS=12.988;HRun=0;HaplotypeScore=0.9578;MQ=59.13;MQ0=0;MQRankSum=0.899;QD=20.73;ReadPosRankSum=0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542157    GT:AD:DP:GQ:PL    0/1:19,33:53:99:1129,0,548
11    60783126    rs3019556    C    T    2133.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=58.47;MQ0=0;QD=34.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542157    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2166,166,0
11    60783135    rs3019557    A    G    2221.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=58.74;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542157    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2254,187,0
11    60785352    rs1050922    A    G    1288.16    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.929;DB;DP=87;Dels=0.0;FS=1.764;HRun=4;HaplotypeScore=1.6643;MQ=59.47;MQ0=0;MQRankSum=-0.816;QD=14.81;ReadPosRankSum=2.377;SNPEFF_AMINO_ACID_CHANGE=S495;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60785231_60785485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346437    GT:AD:DP:GQ:PL    0/1:39,48:87:99:1318,0,1234
11    60785723    rs59258857    T    C    114.98    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.0;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419282    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:145,0,26
11    60890563    rs4245224    C    T    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544014    GT:AD:DP:GQ:PL    0/1:2,2:4:58.23:71,0,58
11    60891310    rs7106643    T    C    120.16    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4719;MQ=48.43;MQ0=0;MQRankSum=-0.956;QD=10.92;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544014    GT:AD:DP:GQ:PL    0/1:6,5:11:82.23:150,0,82
11    60892606    rs637186    A    G    1693.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.28;MQ0=0;QD=34.57;SNPEFF_AMINO_ACID_CHANGE=H461R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60892504_60892623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347785    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1727,126,0
11    60893235    rs2229177    C    T    487.73    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.334;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.083;QD=13.94;ReadPosRankSum=0.613;SNPEFF_AMINO_ACID_CHANGE=A471V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60893223_60893313;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347785    GT:AD:DP:GQ:PL    0/1:19,16:35:99:518,0,583
11    60906450    rs508970    A    G    78.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=13.01;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS37C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301765    GT:AD:DP:GQ:PL    0/1:2,4:6:67.94:108,0,68
11    60971069    rs1610547    A    G    99.81    MQFilter40    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=44;Dels=0.0;FS=4.501;HRun=0;HaplotypeScore=0.9159;MQ=37.61;MQ0=2;MQRankSum=-3.53;QD=2.27;ReadPosRankSum=-0.808;SNPEFF_AMINO_ACID_CHANGE=A11;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_60970852_60971092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PGA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325558    GT:AD:DP:GQ:PL    0/1:27,17:44:99:130,0,658
11    60971751    .    C    T    697.66    MQFilter40    AC=2;AF=1.00;AN=2;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.27;MQ0=10;QD=17.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325558    GT:AD:DP:GQ:PL    1/1:8,31:39:80.93:731,81,0
11    60974811    rs143939102    G    A    292.83    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=18.66;MQ0=2;MQRankSum=1.488;QD=18.3;ReadPosRankSum=1.488;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537954    GT:AD:DP:GQ:PL    1/1:2,14:16:38.95:326,39,0
11    60974846    rs117822496    C    G    786.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=19.62;MQ0=2;QD=20.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537954    GT:AD:DP:GQ:PL    1/1:1,37:38:98.86:820,99,0
11    60974895    rs146439300    C    A    670.95    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641;DB;DP=72;Dels=0.0;FS=11.614;HRun=1;HaplotypeScore=0.9867;MQ=14.01;MQ0=33;MQRankSum=-1.368;QD=9.32;ReadPosRankSum=-0.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537954    GT:AD:DP:GQ:PL    1/1:21,51:72:62.21:704,62,0
11    61106525    rs2512809    C    T    699.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524968    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:732,60,0
11    61106892    rs2513329    G    C    717.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=29.89;SNPEFF_AMINO_ACID_CHANGE=T156;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61106726_61106907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529479    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:750,63,0
11    61109675    rs3741268    G    A    200.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524968    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
11    61110169    rs4939514    A    C    1256.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3609;MQ=58.87;MQ0=0;QD=30.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524968    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1289,108,0
11    61112802    rs2305465    C    T    839.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.31;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=V436;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61112732_61112838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529479    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:873,66,0
11    61123965    rs76030461    A    G    3510.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.1729;MQ=59.38;MQ0=0;QD=31.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYBASC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535152    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3510,262,0
11    61135129    rs7937419    A    G    126.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534963    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
11    61165280    rs3741265    G    A    4057.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=34.98;SNPEFF_AMINO_ACID_CHANGE=P27;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61165246_61165447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM216;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398979    GT:AD:DP:GQ:PL    1/1:0,116:116:99:4058,313,0
11    61165731    rs11382548    C    CA    1093.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=117.0455;IndelType=I;MQ=59.19;MQ0=0;QD=45.55;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM216;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334888    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:1135,72,0
11    61165741    rs10897158    G    C    611.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.55;MQ0=0;QD=29.14;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM216;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000398979    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:645,51,0
11    61179006    rs3018727    T    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413232    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    61179285    rs3019198    G    A    1659.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_AMINO_ACID_CHANGE=I169;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61179241_61179409;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544147    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1693,126,0
11    61183554    rs80264062    C    G    286.04    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.124;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.161;QD=9.86;ReadPosRankSum=-0.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413184    GT:AD:DP:GQ:PL    0/1:19,10:29:99:316,0,631
11    61205434    rs879647    G    A    1875.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-286N22.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541135    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1909,144,0
11    61205676    rs111410343    C    CT    153.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=17;FS=0.0;HRun=12;HaplotypeScore=115.3756;IndelType=I;MQ=55.8;MQ0=0;MQRankSum=1.044;QD=9.03;ReadPosRankSum=-1.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SDHAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536250    GT:AD:DP:GQ:PL    1/1:12,5:17:7.40:194,7,0
11    61249383    rs3019200    C    A    837.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.2;SNPEFF_AMINO_ACID_CHANGE=T34;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61249254_61249390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf66;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338608    GT:AD:DP:GQ:PL    1/1:0,26:26:63.21:870,63,0
11    61253200    rs3019187    G    A    796.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-286N22.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538594    GT:AD:DP:GQ:PL    1/1:0,25:25:66.18:829,66,0
11    61253973    rs2957858    A    G    869.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-286N22.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538594    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:903,69,0
11    61254376    rs3019188    G    C    4078.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=59.65;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-286N22.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538594    GT:AD:DP:GQ:PL    1/1:0,118:119:99:4078,313,0
11    61300704    rs1151138    G    C    187.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263846    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:220,18,0
11    61487690    rs198430    G    A    510.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.325;DB;DP=33;Dels=0.0;FS=5.691;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.172;QD=15.47;ReadPosRankSum=-1.012;SNPEFF_AMINO_ACID_CHANGE=P21;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61487584_61487722;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:11,22:33:99:541,0,287
11    61490245    rs17156254    G    A    177.89    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.679;DB;DP=24;Dels=0.0;FS=4.973;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.282;QD=7.41;ReadPosRankSum=0.987;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:17,7:24:99:208,0,459
11    61491097    rs566009    A    G    1045.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    1/1:0,28:28:81.27:1079,81,0
11    61496272    rs198418    A    C    65.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=9.38;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:4,3:7:95.69:96,0,137
11    61502910    rs740004    C    T    102.36    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.37;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:4,5:9:99:132,0,140
11    61503381    rs198446    G    A    34.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.99;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:3,2:5:64.97:65,0,90
11    61505168    rs198444    G    A    678    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=0.08;DB;DP=58;Dels=0.0;FS=3.904;HRun=1;HaplotypeScore=2.5326;MQ=58.39;MQ0=0;MQRankSum=-1.078;QD=11.69;ReadPosRankSum=0.793;SNPEFF_AMINO_ACID_CHANGE=A508;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61505159_61505227;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:31,27:58:99:708,0,784
11    61505696    rs198443    G    T    217.57    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DB;DP=19;Dels=0.0;FS=8.392;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.612;QD=11.45;ReadPosRankSum=-1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:10,9:19:99:248,0,292
11    61508074    rs11828739    C    T    1010.01    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=62;Dels=0.0;FS=1.255;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.542;QD=16.29;ReadPosRankSum=1.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:30,32:62:99:1040,0,872
11    61508522    rs198440    A    G    123.92    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.001;QD=12.39;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:3,7:10:99:154,0,101
11    61510829    rs10897176    T    C    968.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=11.7587;MQ=43.75;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    1/1:0,28:28:84.22:1001,84,0
11    61510853    .    AG    A    323.05    PASS    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=3.983;DP=67;FS=0.0;HRun=1;HaplotypeScore=843.581;IndelType=D;MQ=45.06;MQ0=0;MQRankSum=-3.162;QD=4.82;ReadPosRankSum=-0.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:57,10:67:99:362,0,259
11    61511133    rs3741251    G    A    559.01    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.944;DB;DP=47;Dels=0.0;FS=1.378;HRun=0;HaplotypeScore=2.6988;MQ=53.81;MQ0=0;MQRankSum=2.115;QD=11.89;ReadPosRankSum=0.697;SNPEFF_AMINO_ACID_CHANGE=A767;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61511004_61514473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAGLA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257215    GT:AD:DP:GQ:PL    0/1:28,19:47:99:589,0,667
11    61543499    rs174528    T    C    195.19    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=24;Dels=0.0;FS=1.824;HRun=2;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.716;QD=8.13;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265460    GT:AD:DP:GQ:PL    0/1:15,9:24:99:225,0,444
11    61548559    rs509360    A    G    1072    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.112;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.384;QD=16.24;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327797    GT:AD:DP:GQ:PL    0/1:25,40:66:99:1102,0,738
11    61548874    rs174532    G    A    104.98    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.143;QD=9.54;ReadPosRankSum=1.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327797    GT:AD:DP:GQ:PL    0/1:6,5:11:99:135,0,205
11    61549431    rs115425361    G    C    33.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327797    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
11    61560031    rs144890118    T    C    578.28    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=45;Dels=0.0;FS=2.623;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.012;QD=12.85;ReadPosRankSum=-0.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265460    GT:AD:DP:GQ:PL    0/1:22,23:45:99:608,0,644
11    61607771    rs189632925    T    G    53.11    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DB;DP=23;Dels=0.0;FS=6.264;HRun=2;HaplotypeScore=2.5802;MQ=53.67;MQ0=0;MQRankSum=-1.837;QD=2.31;ReadPosRankSum=3.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543488    GT:AD:DP:GQ:PL    0/1:9,14:23:83.11:83,0,246
11    61615542    rs7935946    C    T    164.10    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.212;QD=9.65;ReadPosRankSum=-1.059;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_61614063_61615756;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355484    GT:AD:DP:GQ:PL    0/1:9,8:17:99:194,0,318
11    61624414    rs174602    T    C    747.45    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=44;Dels=0.0;FS=4.121;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=16.99;ReadPosRankSum=0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543488    GT:AD:DP:GQ:PL    0/1:20,24:44:99:777,0,581
11    61624885    rs526126    G    C    445.84    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.56;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.3;MQ0=0;MQRankSum=1.754;QD=13.51;ReadPosRankSum=-0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543488    GT:AD:DP:GQ:PL    0/1:15,18:33:99:476,0,476
11    61630384    rs78678033    G    A    401.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.889;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=15.44;ReadPosRankSum=-1.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543488    GT:AD:DP:GQ:PL    0/1:13,13:26:99:431,0,310
11    61632298    rs654226    G    A    46.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355484    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
11    61632310    rs12577276    A    G    52.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355484    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
11    61641211    rs6591665    A    G    80.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414624    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
11    61643811    .    GC    G    290.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DP=22;FS=0.0;HRun=4;HaplotypeScore=68.949;IndelType=D;MQ=60.49;MQ0=0;MQRankSum=1.313;QD=13.19;ReadPosRankSum=0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414624    GT:AD:DP:GQ:PL    0/1:11,11:22:99:329,0,386
11    61644234    rs76242765    T    C    82.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=16.57;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=T363A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61643831_61644435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540820    GT:AD:DP:GQ:PL    0/1:2,3:5:64.76:113,0,65
11    61646417    rs75930575    G    A    134.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.86;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543488    GT:AD:DP:GQ:PL    0/1:3,5:8:80.91:165,0,81
11    61647387    rs174634    G    C    39.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.85;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543488    GT:AD:DP:GQ:PL    0/1:2,3:5:61.89:69,0,62
11    61647427    rs174635    T    G    209.16    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=16.09;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543488    GT:AD:DP:GQ:PL    0/1:5,8:13:99:239,0,165
11    61670037    rs174471    C    T    73.58    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=9.2;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3IL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531922    GT:AD:DP:GQ:PL    0/1:5,3:8:99:104,0,118
11    61687454    rs11230827    G    A    74.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.41;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3IL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301773    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,101
11    61717715    rs972353    T    C    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435278    GT:AD:DP:GQ:PL    0/1:2,2:4:71.48:71,0,73
11    61719387    rs1800007    T    C    1215.29    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.488;DB;DP=84;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=2.6183;MQ=55.21;MQ0=0;MQRankSum=0.27;QD=14.3;ReadPosRankSum=-0.076;SNPEFF_AMINO_ACID_CHANGE=L37;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61719243_61719430;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378043    GT:AD:DP:GQ:PL    0/1:34,50:84:99:1245,0,767
11    61722838    rs195165    T    A    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_61722815_61722859;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526988    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    61724003    rs195163    C    T    132.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=26.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529191    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:165,15,0
11    61724292    rs760306    C    T    3697.07    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=6.461;DB;DP=248;Dels=0.0;FS=6.082;HRun=0;HaplotypeScore=5.0362;MQ=59.48;MQ0=0;MQRankSum=2.806;QD=14.91;ReadPosRankSum=0.664;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529191    GT:AD:DP:GQ:PL    0/1:126,122:248:99:3697,0,3684
11    61724514    rs195162    C    T    1993.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.77;MQ0=0;QD=37.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533521    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2027,150,0
11    61724583    rs195161    T    G    209.50    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.991;QD=16.12;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533521    GT:AD:DP:GQ:PL    0/1:5,8:13:99:239,0,169
11    61725599    rs113492158    A    ATCCTCCTCC    3913.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=234.1603;IndelType=I;MQ=33.04;MQ0=0;QD=97.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533521    GT:AD:DP:GQ:PL    1/1:16,22:40:93.32:3914,93,0
11    61726871    rs195158    G    T    713.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529265    GT:AD:DP:GQ:PL    1/1:0,19:19:57.16:747,57,0
11    61730036    rs149698    G    A    1649.42    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=1.899;DB;DP=98;Dels=0.0;FS=1.746;HRun=0;HaplotypeScore=1.367;MQ=59.72;MQ0=0;MQRankSum=0.633;QD=16.83;ReadPosRankSum=-0.656;SNPEFF_AMINO_ACID_CHANGE=T383;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61729727_61730365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378042    GT:AD:DP:GQ:PL    0/1:38,60:98:99:1679,0,979
11    61731534    rs195155    G    T    573.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301774    GT:AD:DP:GQ:PL    1/1:0,19:20:48.13:607,48,0
11    61895476    rs3825035    G    A    207.65    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=17.3;ReadPosRankSum=-1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    0/1:5,7:12:99:238,0,172
11    61895541    rs1675130    A    G    451.37    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.028;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.604;QD=17.36;ReadPosRankSum=0.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    0/1:7,19:26:99:481,0,203
11    61895741    rs1675131    A    G    341.61    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.43;DB;DP=27;Dels=0.0;FS=10.447;HRun=0;HaplotypeScore=0.6651;MQ=59.14;MQ0=0;MQRankSum=-0.328;QD=12.65;ReadPosRankSum=-0.394;SNPEFF_AMINO_ACID_CHANGE=E36;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61895623_61895773;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    0/1:13,14:27:99:372,0,367
11    61896215    rs1792946    G    A    873.08    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=3.782;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.442;QD=16.47;ReadPosRankSum=1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    0/1:22,31:53:99:903,0,572
11    61897197    rs1792944    C    T    152.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.866;QD=15.21;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    0/1:4,6:10:99:182,0,132
11    61897359    rs1675133    C    T    591.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.602;DB;DP=30;Dels=0.0;FS=2.366;HRun=1;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=-0.636;QD=19.7;ReadPosRankSum=-1.195;SNPEFF_AMINO_ACID_CHANGE=V120;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61897254_61898062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    0/1:10,20:30:99:621,0,234
11    61898192    rs1792943    G    A    38.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=9.52;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533896    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:68,0,33
11    61906299    rs1614060    A    G    3597.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528037    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3598,268,0
11    61906374    rs1675126    T    C    3818.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.07;SNPEFF_AMINO_ACID_CHANGE=N396;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61906360_61906477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    1/1:0,127:127:99:3818,295,0
11    61907909    rs1675124    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    61908440    rs2277283    T    C    445.37    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=32;Dels=0.0;FS=5.469;HRun=0;HaplotypeScore=0.0;MQ=58.09;MQ0=0;MQRankSum=0.798;QD=13.92;ReadPosRankSum=0.019;SNPEFF_AMINO_ACID_CHANGE=M506T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61908385_61908516;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    0/1:12,20:32:99:475,0,335
11    61912885    rs76116867    G    T    215.63    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=16.59;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528375    GT:AD:DP:GQ:PL    0/1:6,7:13:99:246,0,168
11    61913091    rs77765284    G    C    46.39    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.6;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528375    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:76,0,33
11    61913196    rs7129085    G    T    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=E640D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_61913101_61913223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INCENP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278849    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
11    61959725    rs3831484    GTC    G    632.49    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=3.399;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=115.3016;IndelType=D;MQ=59.81;MQ0=0;MQRankSum=-1.19;QD=18.07;ReadPosRankSum=1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306238    GT:AD:DP:GQ:PL    0/1:17,18:35:99:672,0,760
11    61960763    rs11441356    T    TC    191.77    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=26.1671;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=14.75;ReadPosRankSum=-2.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306238    GT:AD:DP:GQ:PL    0/1:7,6:13:99:231,0,234
11    61981063    rs3915491    G    C    110.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=12.26;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244930    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,157
11    62037583    rs11603383    G    A    1633.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.02;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227918    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1667,129,0
11    62123717    rs2463837    G    A    488.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASRGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301776    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:521,45,0
11    62123748    rs140263689    C    T    332.75    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DB;DP=27;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=1.115;QD=12.32;ReadPosRankSum=1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASRGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301776    GT:AD:DP:GQ:PL    0/1:15,12:27:99:363,0,395
11    62186542    rs11549442    G    A    343.64    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.377;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.396;QD=16.36;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCGB1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534397    GT:AD:DP:GQ:PL    0/1:8,13:21:99:374,0,154
11    62201458    rs4084164    A    G    803.13    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=51;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=1.519;QD=15.75;ReadPosRankSum=1.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHNAK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257247    GT:AD:DP:GQ:PL    0/1:24,27:51:99:833,0,744
11    62286666    rs114515655    C    T    1259.60    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=1.048;DB;DP=113;Dels=0.0;FS=0.74;HRun=0;HaplotypeScore=2.4804;MQ=59.17;MQ0=0;MQRankSum=1.372;QD=11.15;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=V5075M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62283377_62301546;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHNAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378024    GT:AD:DP:GQ:PL    0/1:68,45:113:99:1290,0,2058
11    62292882    rs566144    G    T    5805.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4679;MQ=57.85;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=Q3003K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62283377_62301546;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHNAK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378024    GT:AD:DP:GQ:PL    1/1:0,180:180:99:5806,472,0
11    62293948    rs486903    G    A    7588.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=218;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.58;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=S2647;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62283377_62301546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHNAK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378024    GT:AD:DP:GQ:PL    1/1:0,218:218:99:7589,566,0
11    62334908    rs1061093    G    C    1067.36    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.466;DB;DP=73;Dels=0.0;FS=1.975;HRun=3;HaplotypeScore=1.6385;MQ=59.49;MQ0=0;MQRankSum=1.164;QD=14.62;ReadPosRankSum=1.186;SNPEFF_AMINO_ACID_CHANGE=G205;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62334871_62335000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329251    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1097,0,898
11    62342220    .    C    T    104.86    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DP=23;Dels=0.0;FS=2.066;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=4.56;ReadPosRankSum=-0.595;SNPEFF_AMINO_ACID_CHANGE=D31N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62342149_62342401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378019    GT:AD:DP:GQ:PL    0/1:17,6:23:99:135,0,562
11    62346131    rs3888173    C    T    811.33    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.408;DB;DP=58;Dels=0.0;FS=3.875;HRun=0;HaplotypeScore=0.734;MQ=58.82;MQ0=0;MQRankSum=0.565;QD=13.75;ReadPosRankSum=0.079;SNPEFF_AMINO_ACID_CHANGE=G354;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62346033_62346502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000476907    GT:AD:DP:GQ:PL    0/1:25,33:58:99:841,0,714
11    62361448    .    G    A    472.25    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DP=46;Dels=0.0;FS=6.489;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=10.27;ReadPosRankSum=-0.793;SNPEFF_AMINO_ACID_CHANGE=L463;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62360687_62361512;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524902    GT:AD:DP:GQ:PL    0/1:27,19:46:99:502,0,827
11    62362293    rs11231154    A    G    247.01    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=13.0;ReadPosRankSum=0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526844    GT:AD:DP:GQ:PL    0/1:10,9:19:99:277,0,347
11    62365619    rs11231155    A    G    1066.80    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.154;DB;DP=90;Dels=0.0;FS=0.81;HRun=0;HaplotypeScore=0.9973;MQ=59.74;MQ0=0;MQRankSum=-1.187;QD=11.85;ReadPosRankSum=-1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278845    GT:AD:DP:GQ:PL    0/1:51,39:90:99:1097,0,1760
11    62365665    rs2849031    G    A    1371.31    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=4.824;DB;DP=101;Dels=0.0;FS=0.882;HRun=0;HaplotypeScore=0.7887;MQ=59.31;MQ0=0;MQRankSum=0.403;QD=13.58;ReadPosRankSum=0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278845    GT:AD:DP:GQ:PL    0/1:53,48:101:99:1401,0,1438
11    62370490    rs71458425    C    CGAGGGCCG    825.44    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=77.678;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=-3.204;QD=58.96;ReadPosRankSum=0.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438258    GT:AD:DP:GQ:PL    0/1:9,5:14:99:864,0,491
11    62371773    rs2516633    A    C    34.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.95;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438258    GT:AD:DP:GQ:PL    0/1:3,2:5:64.76:65,0,108
11    62374256    rs2512559    A    G    159.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419857    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
11    62377359    rs67308910    G    A    109.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.32;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419857    GT:AD:DP:GQ:PL    0/1:2,4:6:65.40:140,0,65
11    62378660    rs12808829    G    A    139.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=11.65;ReadPosRankSum=1.977;SNPEFF_AMINO_ACID_CHANGE=S117;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62378559_62378816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394773    GT:AD:DP:GQ:PL    0/1:7,5:12:99:170,0,193
11    62378801    rs11553576    T    C    677.76    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.487;QD=17.84;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=P41;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62378584_62378816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419857    GT:AD:DP:GQ:PL    0/1:13,25:38:99:708,0,391
11    62381106    rs1799959    G    C    452.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.4696;MQ=57.53;MQ0=0;QD=23.81;SNPEFF_AMINO_ACID_CHANGE=G118A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62380213_62381343;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278833    GT:AD:DP:GQ:PL    1/1:0,19:19:42.10:485,42,0
11    62381483    rs72927237    T    C    198.30    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.858;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=9.44;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265471    GT:AD:DP:GQ:PL    0/1:14,7:21:99:228,0,515
11    62381703    rs35904570    C    CT    4306.60    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.436;DB;DP=230;FS=0.0;HRun=1;HaplotypeScore=542.3496;IndelType=I;MQ=59.87;MQ0=0;MQRankSum=-1.876;QD=18.72;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265471    GT:AD:DP:GQ:PL    0/1:118,112:230:99:4307,0,3601
11    62381808    rs1801144    G    C    1742.02    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=159;Dels=0.0;FS=6.012;HRun=2;HaplotypeScore=1.8606;MQ=59.71;MQ0=0;MQRankSum=0.232;QD=10.96;ReadPosRankSum=-0.095;SNPEFF_AMINO_ACID_CHANGE=G14A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62381730_62381943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525801    GT:AD:DP:GQ:PL    0/1:85,73:159:99:1772,0,2712
11    62384869    rs4963224    T    C    792.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=58.7;MQ0=0;QD=27.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278833    GT:AD:DP:GQ:PL    1/1:0,29:29:69.18:825,69,0
11    62389618    rs4343028    C    T    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GANAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346178    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    62394881    rs7949030    A    G    685.18    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.787;DB;DP=27;Dels=0.0;FS=2.634;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=25.38;ReadPosRankSum=0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GANAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346178    GT:AD:DP:GQ:PL    0/1:6,21:27:99:715,0,137
11    62397177    rs948683    C    G    940.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GANAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524437    GT:AD:DP:GQ:PL    1/1:0,33:33:75.23:973,75,0
11    62398768    rs11231167    C    T    1189.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GANAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524437    GT:AD:DP:GQ:PL    1/1:0,30:30:90.30:1222,90,0
11    62400016    rs10897289    T    C    731.31    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=57;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.277;QD=12.83;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GANAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524437    GT:AD:DP:GQ:PL    0/1:23,34:57:99:761,0,787
11    62401620    rs11231168    C    T    126.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=12.63;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GANAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524437    GT:AD:DP:GQ:PL    0/1:5,5:10:99:156,0,179
11    62401716    rs2957121    A    G    1149.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GANAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524437    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1182,102,0
11    62430659    rs597259    T    A    559    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.9;DB;DP=45;Dels=0.0;FS=1.218;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.261;QD=12.42;ReadPosRankSum=-0.971;SNPEFF_AMINO_ACID_CHANGE=D104V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62430587_62430805;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525675    GT:AD:DP:GQ:PL    0/1:26,19:45:99:589,0,775
11    62434173    rs11231181    G    A    477.65    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DB;DP=34;Dels=0.0;FS=7.319;HRun=1;HaplotypeScore=1.1567;MQ=58.76;MQ0=0;MQRankSum=-0.88;QD=14.05;ReadPosRankSum=-1.018;SNPEFF_AMINO_ACID_CHANGE=G125S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62433868_62435580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=ambiguous_orf;SNPEFF_GENE_NAME=METTL12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532971    GT:AD:DP:GQ:PL    0/1:18,16:34:99:508,0,602
11    62437000    rs12291465    C    T    656.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.073;DB;DP=44;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=1.8519;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=14.93;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377954    GT:AD:DP:GQ:PL    0/1:22,22:44:99:687,0,791
11    62437647    rs489778    G    C    48.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=5.44;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=ambiguous_orf;SNPEFF_GENE_NAME=METTL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398922    GT:AD:DP:GQ:PL    0/1:6,3:9:78.92:79,0,226
11    62438750    rs17637597    T    C    571.21    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.548;DB;DP=39;Dels=0.0;FS=1.323;HRun=0;HaplotypeScore=1.7234;MQ=60.0;MQ0=0;MQRankSum=1.981;QD=14.65;ReadPosRankSum=-2.121;SNPEFF_AMINO_ACID_CHANGE=N18S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62438712_62438860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377954    GT:AD:DP:GQ:PL    0/1:19,20:39:99:601,0,575
11    62438819    rs693698    G    T    273.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.844;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.205;QD=10.92;ReadPosRankSum=1.142;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_62438756_62439337;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531323    GT:AD:DP:GQ:PL    0/1:15,10:25:99:303,0,504
11    62438846    rs3809079    G    A    436.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.637;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.014;QD=18.2;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=ambiguous_orf;SNPEFF_GENE_NAME=METTL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398922    GT:AD:DP:GQ:PL    0/1:9,15:24:99:467,0,304
11    62444798    rs644616    T    G    190.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.472;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.088;QD=10.57;ReadPosRankSum=-0.795;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377953    GT:AD:DP:GQ:PL    0/1:9,9:18:99:220,0,273
11    62459994    rs2850597    A    G    514.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=25.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524862    GT:AD:DP:GQ:PL    1/1:0,20:20:42.13:547,42,0
11    62460066    rs2850596    T    C    924.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524862    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:958,75,0
11    62487362    rs528616    C    G    486.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540127    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:520,39,0
11    62488448    rs2165737    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540127    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    62488916    rs34425182    T    TG    3139.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;FS=0.0;HRun=1;HaplotypeScore=242.8065;IndelType=I;MQ=61.8;MQ0=0;QD=37.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540127    GT:AD:DP:GQ:PL    1/1:7,77:84:99:3182,226,0
11    62489267    rs496032    C    T    3388.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.76;MQ0=0;QD=35.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPUL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540127    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3388,244,0
11    62521389    .    C    A    159.02    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DP=31;Dels=0.0;FS=5.28;HRun=0;HaplotypeScore=0.8941;MQ=59.25;MQ0=0;MQRankSum=-0.147;QD=5.13;ReadPosRankSum=0.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394807    GT:AD:DP:GQ:PL    0/1:23,8:31:99:189,0,762
11    62529532    rs4061933    G    A    151.71    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=21.67;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301788    GT:AD:DP:GQ:PL    0/1:1,6:7:19.74:182,0,20
11    62562350    .    C    T    481.76    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-2.248;QD=21.9;ReadPosRankSum=0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526163    GT:AD:DP:GQ:PL    0/1:6,16:22:99:512,0,183
11    62563353    rs539465    G    A    2818.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=32.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439713    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2851,211,0
11    62564009    rs4693    T    C    721.83    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=67;Dels=0.0;FS=1.158;HRun=1;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=1.822;QD=10.77;ReadPosRankSum=0.735;SNPEFF_AMINO_ACID_CHANGE=R403;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62563932_62564039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294172    GT:AD:DP:GQ:PL    0/1:40,27:67:99:752,0,1261
11    62572868    .    C    A    237.30    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DP=24;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.56;QD=9.89;ReadPosRankSum=-1.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294179    GT:AD:DP:GQ:PL    0/1:12,11:24:99:267,0,374
11    62652063    rs489381    A    G    1927.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537839    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1960,159,0
11    62652779    rs4726    C    T    750.63    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=2.921;DB;DP=47;Dels=0.0;FS=2.678;HRun=1;HaplotypeScore=0.9867;MQ=59.51;MQ0=0;MQRankSum=0.524;QD=15.97;ReadPosRankSum=1.444;SNPEFF_AMINO_ACID_CHANGE=L299;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62652649_62652829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC3A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422606    GT:AD:DP:GQ:PL    0/1:21,26:47:99:781,0,663
11    62747145    rs3017671    A    G    1048.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=36.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC22A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537349    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1081,81,0
11    62766431    rs2276299    A    T    1575.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=50;Dels=0.0;FS=3.478;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.167;QD=31.51;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=T118;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62766393_62766561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC22A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535878    GT:AD:DP:GQ:PL    1/1:1,49:50:89.38:1608,89,0
11    62781921    rs4149181    A    G    69.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC22A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544707    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:101,9,0
11    62782278    rs4149180    C    T    874.07    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=1.832;DB;DP=81;Dels=0.0;FS=6.29;HRun=0;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;MQRankSum=-0.16;QD=10.79;ReadPosRankSum=0.5;SNPEFF_AMINO_ACID_CHANGE=P37;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62782098_62782289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC22A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540631    GT:AD:DP:GQ:PL    0/1:52,29:81:99:904,0,1388
11    62886319    rs948060    G    C    2743.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=L299V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62885993_62886552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326192    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2777,211,0
11    62886800    rs4963245    G    C    577.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.489;DB;DP=38;Dels=0.0;FS=2.884;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.934;QD=15.2;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=R172G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62886653_62886807;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326192    GT:AD:DP:GQ:PL    0/1:19,19:38:99:607,0,578
11    62902172    rs1939782    A    C    2490.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4803;MQ=59.7;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=L157;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62902137_62902240;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326192    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2524,190,0
11    62910849    rs1939749    T    C    1376.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=59.45;MQ0=0;QD=32.78;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A24;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000417740    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1410,105,0
11    62911079    rs1939748    G    C    1948.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=35.42;SNPEFF_AMINO_ACID_CHANGE=T58S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62910850_62911693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326192    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1981,147,0
11    62931484    rs6591771    T    C    2265.11    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=171;Dels=0.0;FS=4.532;HRun=0;HaplotypeScore=1.6609;MQ=60.0;MQ0=0;MQRankSum=-0.893;QD=13.25;ReadPosRankSum=-1.003;SNPEFF_AMINO_ACID_CHANGE=M486V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_62931248_62931545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306494    GT:AD:DP:GQ:PL    0/1:91,80:171:99:2295,0,2965
11    62947892    rs1939738    T    C    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535888    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
11    62951064    rs1525072    C    A    980.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535888    GT:AD:DP:GQ:PL    1/1:0,29:29:78.20:1014,78,0
11    62995875    rs7106186    G    A    235.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=19.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535888    GT:AD:DP:GQ:PL    1/1:0,12:12:21.07:268,21,0
11    63057925    rs1790218    G    A    2534.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=59.7;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=W44*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_63057780_63058039;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000526800    GT:AD:DP:GQ:PL    1/1:0,76:77:99:2568,193,0
11    63058759    rs3937020    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    63064823    rs576641    T    C    2701.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_AMINO_ACID_CHANGE=I185;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63064775_63064929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2734,205,0
11    63064970    rs575009    T    G    2946.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=59.74;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2979,223,0
11    63065340    rs572017    A    C    81.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
11    63066667    rs1723213    T    C    276.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:310,24,0
11    63066671    rs1783634    A    G    254.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:288,24,0
11    63066903    rs515213    T    C    1156.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1190,87,0
11    63067138    rs513338    T    G    1314.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1347,105,0
11    63069715    rs557658    A    G    601.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:635,48,0
11    63071863    rs505653    T    C    71.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
11    63072118    .    AT    A    307.36    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.583;DP=41;FS=6.876;HRun=8;HaplotypeScore=117.0795;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.557;QD=7.5;ReadPosRankSum=-0.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    0/1:25,16:41:99:346,0,707
11    63072310    rs1201559    C    T    2129.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=P516L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63072158_63072361;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332793    GT:AD:DP:GQ:PL    1/1:1,64:65:99:2163,160,0
11    63137384    rs10897407    A    G    159.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525620    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
11    63138482    rs566456    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525620    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
11    63142877    rs556730    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC22A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279178    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    63233710    rs2275999    A    G    600.97    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.265;DB;DP=58;Dels=0.0;FS=2.305;HRun=3;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;MQRankSum=0.072;QD=10.36;ReadPosRankSum=0.298;SNPEFF_AMINO_ACID_CHANGE=L197;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63233582_63233844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HRASLS5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540857    GT:AD:DP:GQ:PL    0/1:32,25:58:99:631,0,1038
11    63258298    rs116362768    C    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HRASLS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301790    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    63258416    rs10897424    T    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_AMINO_ACID_CHANGE=S31G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63258359_63258666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HRASLS5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301790    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    63274120    rs12272556    G    C    73.20    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=4.88;ReadPosRankSum=-0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255684    GT:AD:DP:GQ:PL    0/1:11,4:15:99:103,0,412
11    63278621    rs2239679    C    G    285.14    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=29;Dels=0.0;FS=2.087;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.952;QD=9.83;ReadPosRankSum=-0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255684    GT:AD:DP:GQ:PL    0/1:17,12:29:99:315,0,494
11    63311918    rs181057252    C    T    235.96    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.436;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.57;MQ0=0;MQRankSum=-0.372;QD=12.42;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RARRES3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255688    GT:AD:DP:GQ:PL    0/1:11,8:19:99:266,0,398
11    63313644    rs584905    T    C    5174.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.43;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=V137;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63313621_63313934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RARRES3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255688    GT:AD:DP:GQ:PL    1/1:0,163:163:99:5175,406,0
11    63330396    rs6591814    A    C    113.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.74;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRASLS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255695    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:144,0,26
11    63357426    rs3831464    CCCTTGT    C    559    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=106.9378;IndelType=D;MQ=48.77;MQ0=0;MQRankSum=-2.646;QD=32.88;ReadPosRankSum=0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540943    GT:AD:DP:GQ:PL    0/1:8,9:17:99:598,0,690
11    63357919    rs593759    C    T    251.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323646    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
11    63381249    rs2030728    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323646    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    63381350    rs2030727    G    C    525.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323646    GT:AD:DP:GQ:PL    1/1:0,19:19:45.11:559,45,0
11    63413962    rs67692192    AAAAT    A    3053.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=0;HaplotypeScore=298.0751;IndelType=D;MQ=55.88;MQ0=0;QD=52.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332645    GT:AD:DP:GQ:PL    1/1:1,57:58:99:3095,172,0
11    63487386    rs542998    T    C    1741.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6203;MQ=58.69;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=V359A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63486453_63488504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540798    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1775,135,0
11    63488564    rs115424302    G    C    348.09    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.942;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=12.0;ReadPosRankSum=-1.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543552    GT:AD:DP:GQ:PL    0/1:14,15:29:99:378,0,473
11    63585804    rs643634    C    A    864.50    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=3.399;DB;DP=70;Dels=0.0;FS=3.576;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-1.008;QD=12.35;ReadPosRankSum=-1.424;SNPEFF_AMINO_ACID_CHANGE=R192;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63585688_63585837;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf84;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294244    GT:AD:DP:GQ:PL    0/1:34,35:70:99:894,0,932
11    63663130    rs67114316    CTTTTTTTTTTTT    C    450    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=1.717;DB;DP=71;FS=0.0;HRun=28;HaplotypeScore=853.8172;IndelType=D;MQ=41.65;MQ0=0;MQRankSum=-0.124;QD=6.34;ReadPosRankSum=3.947;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512060    GT:AD:DP:GQ:PL    0/1:55,8:71:99:489,0,2636
11    63668557    rs224174    C    T    474.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508025    GT:AD:DP:GQ:PL    1/1:2,16:18:39.12:508,39,0
11    63670387    rs1486936    C    G    273.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.391;QD=13.02;ReadPosRankSum=0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508025    GT:AD:DP:GQ:PL    0/1:12,9:21:99:303,0,375
11    63680045    rs320109    C    A    1308.07    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=1.591;DB;DP=74;Dels=0.0;FS=3.226;HRun=0;HaplotypeScore=1.8899;MQ=59.69;MQ0=0;MQRankSum=-0.538;QD=17.68;ReadPosRankSum=-0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315032    GT:AD:DP:GQ:PL    0/1:33,41:74:99:1338,0,1010
11    63680297    rs320110    A    G    1180.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315032    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1213,102,0
11    63681513    rs10897461    T    C    1901.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=E268;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63681426_63681641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCOR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301459    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1934,153,0
11    63681648    rs4980533    G    A    472.06    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.5;MQ0=0;MQRankSum=1.004;QD=15.23;ReadPosRankSum=-0.419;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315032    GT:AD:DP:GQ:PL    0/1:14,17:31:99:502,0,412
11    63682312    rs4375445    G    C    3535.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.2381;MQ=51.71;MQ0=0;QD=26.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315032    GT:AD:DP:GQ:PL    1/1:1,133:134:99:3536,283,0
11    63682315    rs34212439    C    G    2968.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.2381;MQ=51.44;MQ0=0;QD=22.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315032    GT:AD:DP:GQ:PL    1/1:0,133:133:99:3001,265,0
11    63682317    rs113350066    TG    T    1892.47    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.235;DB;DP=122;FS=0.0;HRun=1;HaplotypeScore=1611.3955;IndelType=D;MQ=52.57;MQ0=0;MQRankSum=-0.38;QD=15.51;ReadPosRankSum=-0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315032    GT:AD:DP:GQ:PL    0/1:63,58:122:99:1931,0,340
11    63682869    rs3802941    A    G    80.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315032    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
11    63713239    rs3740636    G    A    517.94    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=3.749;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.197;QD=16.71;ReadPosRankSum=-0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAA40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377793    GT:AD:DP:GQ:PL    0/1:14,17:31:99:548,0,343
11    63713317    rs3740637    G    A    1155.83    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=3.132;DB;DP=80;Dels=0.0;FS=5.941;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.045;QD=14.45;ReadPosRankSum=0.135;SNPEFF_AMINO_ACID_CHANGE=K4;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63713312_63713407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAA40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377793    GT:AD:DP:GQ:PL    0/1:37,43:80:99:1186,0,974
11    63714319    rs4980500    T    C    178.76    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=12.77;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAA40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377793    GT:AD:DP:GQ:PL    0/1:6,8:14:99:209,0,210
11    63719621    rs11607028    C    A    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.99;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAA40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377793    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,139
11    63720086    rs4980513    T    G    552.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NAA40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545161    GT:AD:DP:GQ:PL    1/1:0,18:18:45.13:585,45,0
11    63767186    rs709594    A    G    72.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.937;QD=9.07;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S238;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63767114_63767235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255681    GT:AD:DP:GQ:PL    0/1:5,3:8:99:103,0,124
11    63767249    rs11600062    C    T    37.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=4.22;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545464    GT:AD:DP:GQ:PL    0/1:5,4:9:67.95:68,0,124
11    63883985    rs614397    T    C    1309.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=D82;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63883691_63886645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246841    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1342,108,0
11    63884027    rs614035    C    T    1282.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=A96;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63883691_63886645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246841    GT:AD:DP:GQ:PL    1/1:0,38:38:96.29:1316,96,0
11    63884561    rs34856996    G    A    53.94    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=5.39;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=K274;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63883691_63886645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246841    GT:AD:DP:GQ:PL    0/1:7,3:10:83.93:84,0,223
11    63885632    rs4379854    A    G    1718.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7219;MQ=57.23;MQ0=0;QD=33.71;SNPEFF_AMINO_ACID_CHANGE=E631;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63883691_63886645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246841    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1752,135,0
11    63885704    rs677447    C    T    1207.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.33;MQ0=0;QD=27.43;SNPEFF_AMINO_ACID_CHANGE=Y655;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63883691_63886645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246841    GT:AD:DP:GQ:PL    1/1:0,42:44:93.30:1240,93,0
11    63970226    rs145620093    ATGT    A    315.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=66.8515;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=-0.993;QD=19.74;ReadPosRankSum=0.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537479    GT:AD:DP:GQ:PL    0/1:8,8:16:99:355,0,431
11    63994692    rs1860368    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT22;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000536237    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
11    63994696    rs2429456    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.02;SNPEFF_AMINO_ACID_CHANGE=S190P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63994696_63994767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536237    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
11    63997329    rs633561    A    G    988.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8606;MQ=57.05;MQ0=0;QD=30.88;SNPEFF_AMINO_ACID_CHANGE=Q227R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63997322_63997479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441250    GT:AD:DP:GQ:PL    1/1:0,32:32:84.23:1021,84,0
11    63997338    rs633557    T    C    1036.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.03;FS=0.0;HRun=1;HaplotypeScore=3.2711;MQ=57.15;MQ0=0;QD=31.42;SNPEFF_AMINO_ACID_CHANGE=L230P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_63997322_63997479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441250    GT:AD:DP:GQ:PL    1/1:1,31:32:81.26:1070,81,0
11    63999529    rs3741403    C    T    215.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279206    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
11    64004595    .    GT    G    359.87    PASS    AC=2;AF=1.00;AN=2;DP=16;FS=0.0;HRun=1;HaplotypeScore=249.7569;IndelType=D;MQ=31.29;MQ0=0;QD=22.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321460    GT:AD:DP:GQ:PL    1/1:9,6:16:42.79:402,43,0
11    64004643    rs12294913    C    G    702.25    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.171;DB;DP=42;Dels=0.0;FS=4.056;HRun=0;HaplotypeScore=0.0;MQ=49.03;MQ0=0;MQRankSum=-1.191;QD=16.72;ReadPosRankSum=-0.602;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321460    GT:AD:DP:GQ:PL    0/1:13,29:42:99:732,0,326
11    64004692    rs12366035    C    T    893.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.686;DB;DP=72;Dels=0.0;FS=6.799;HRun=0;HaplotypeScore=0.0;MQ=56.38;MQ0=0;MQRankSum=0.949;QD=12.41;ReadPosRankSum=-1.662;SNPEFF_AMINO_ACID_CHANGE=D136;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64004659_64004694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VEGFB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309422    GT:AD:DP:GQ:PL    0/1:36,36:72:99:923,0,1064
11    64011441    rs654573    T    C    3504.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=32.45;SNPEFF_AMINO_ACID_CHANGE=G123;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64011440_64011596;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FKBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309366    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3505,280,0
11    64011614    rs35989122    CTG    C    557.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=81.5452;IndelType=D;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FKBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309366    GT:AD:DP:GQ:PL    1/1:4,15:19:45.15:599,45,0
11    64011742    rs655896    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FKBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309366    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    64012225    rs605187    G    C    1023.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.6;MQ0=3;QD=27.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FKBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309366    GT:AD:DP:GQ:PL    1/1:0,37:37:84.23:1057,84,0
11    64022459    rs632439    A    G    630.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=P112;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64022370_64022510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279230    GT:AD:DP:GQ:PL    1/1:0,20:20:54.15:663,54,0
11    64023971    rs7943988    G    A    1976.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.15;MQ0=0;QD=31.37;SNPEFF_AMINO_ACID_CHANGE=L207;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64023848_64024014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325234    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2009,156,0
11    64024056    rs588177    C    A    1878.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279230    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1912,150,0
11    64026144    rs2244625    G    A    1024.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.27;SNPEFF_AMINO_ACID_CHANGE=S337;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64025945_64026185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325234    GT:AD:DP:GQ:PL    1/1:0,35:35:81.25:1057,81,0
11    64026685    rs28395882    C    T    127.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.19;SNPEFF_AMINO_ACID_CHANGE=S431;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64026530_64026716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325234    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:160,12,0
11    64033555    rs3815362    C    T    976.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309032    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1009,75,0
11    64044284    rs72922077    C    A    86.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309032    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
11    64066859    rs2232417    G    A    215.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.93;SNPEFF_AMINO_ACID_CHANGE=G166S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64066818_64067500;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KCNK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538767    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:248,18,0
11    64067674    rs512372    A    G    109.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=21.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KCNK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394525    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:142,12,0
11    64070940    rs11231746    T    C    908.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KCNK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394525    GT:AD:DP:GQ:PL    1/1:0,32:32:75.22:942,75,0
11    64082437    rs650008    C    T    197.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308774    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:230,18,0
11    64085785    rs7938623    A    G    346.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_AMINO_ACID_CHANGE=Y33C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64085560_64085858;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265462    GT:AD:DP:GQ:PL    1/1:0,13:13:30.06:379,30,0
11    64085938    rs7941847    T    C    71.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000000442    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
11    64088435    rs566049    A    G    4155.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;QD=35.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000000442    GT:AD:DP:GQ:PL    1/1:0,116:116:99:4156,316,0
11    64088562    .    TGGAGAGAGTCCTCTGTG    T    1294.92    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=5.189;DP=79;FS=0.0;HRun=0;HaplotypeScore=1070.588;IndelType=D;MQ=59.44;MQ0=0;MQRankSum=0.931;QD=16.39;ReadPosRankSum=1.552;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000000442    GT:AD:DP:GQ:PL    0/1:56,23:79:99:1334,0,2851
11    64108539    rs66493355    C    T    1528.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356786    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1562,132,0
11    64111928    rs685870    T    C    332.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_AMINO_ACID_CHANGE=W639R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64111469_64112629;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356786    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:366,33,0
11    64116843    rs1318165    A    C    176.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.6;SNPEFF_AMINO_ACID_CHANGE=D38A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64116803_64116930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359902    GT:AD:DP:GQ:PL    1/1:0,9:9:15.05:209,15,0
11    64119318    rs571379    G    C    131.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492980    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
11    64127881    rs564687    T    G    226.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC88B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301897    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:259,21,0
11    64217454    .    C    T    54.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.08;ReadPosRankSum=-1.422;SNPEFF_AMINO_ACID_CHANGE=P65L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64217369_64219126;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP003774.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316124    GT:AD:DP:GQ:PL    0/1:6,3:9:84.67:85,0,207
11    64326795    rs2277312    A    G    161.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=17.97;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301891    GT:AD:DP:GQ:PL    0/1:3,6:9:82.60:192,0,83
11    64332862    rs71456318    A    C    34.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490834    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
11    64359286    rs3825016    C    T    134.95    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.514;DB;DP=32;Dels=0.0;FS=2.044;HRun=0;HaplotypeScore=0.0;MQ=57.18;MQ0=0;MQRankSum=-0.333;QD=4.22;ReadPosRankSum=-1.18;SNPEFF_AMINO_ACID_CHANGE=H86;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64358735_64359430;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336464    GT:AD:DP:GQ:PL    0/1:23,8:32:99:165,0,620
11    64360274    rs11231825    T    C    855.48    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.847;DB;DP=71;Dels=0.0;FS=0.937;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.047;QD=12.05;ReadPosRankSum=0.763;SNPEFF_AMINO_ACID_CHANGE=H142;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64360251_64360354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336464    GT:AD:DP:GQ:PL    0/1:40,31:71:99:885,0,1077
11    64360705    rs10897518    C    T    93.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.683;QD=10.39;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336464    GT:AD:DP:GQ:PL    0/1:3,6:9:99:123,0,105
11    64361384    rs2021860    G    T    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336464    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:71,0,34
11    64365943    rs79866595    T    C    37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.25;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336464    GT:AD:DP:GQ:PL    0/1:2,2:4:66.99:67,0,70
11    64367325    rs1630320    A    G    1025.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=A195;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64367148_64367362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000473690    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1058,81,0
11    64418259    rs555456    T    C    67.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=11.25;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NRXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486057    GT:AD:DP:GQ:PL    0/1:2,4:6:68.41:98,0,68
11    64418900    rs526338    G    A    288.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.649;DB;DP=18;Dels=0.0;FS=1.957;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=16.03;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=I875;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64418727_64419108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NRXN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345863    GT:AD:DP:GQ:PL    0/1:9,9:18:99:319,0,262
11    64427673    rs1152626    G    A    295.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NRXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496291    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
11    64480308    rs2666560    C    T    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NRXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265459    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
11    64496357    rs2230414    G    T    104.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=10.48;ReadPosRankSum=0.633;SNPEFF_AMINO_ACID_CHANGE=G583;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64496335_64496514;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354024    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,214
11    64496587    rs559977    T    C    97.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494001    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:130,12,0
11    64497161    rs534221    C    T    1180.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494001    GT:AD:DP:GQ:PL    1/1:0,36:36:93.26:1213,93,0
11    64497185    rs111769873    C    CA    570.20    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.831;DB;DP=48;FS=0.0;HRun=12;HaplotypeScore=301.1174;IndelType=I;MQ=59.45;MQ0=0;MQRankSum=1.205;QD=11.64;ReadPosRankSum=-2.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494001    GT:AD:DP:GQ:PL    0/1:21,27:48:99:609,0,237
11    64497189    rs533515    A    C    478.59    HaplotypeScoreFilter13    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.492;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=24.1384;MQ=59.47;MQ0=0;MQRankSum=0.102;QD=9.38;ReadPosRankSum=2.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494001    GT:AD:DP:GQ:PL    0/1:34,17:51:99:509,0,144
11    64502519    rs77004138    C    A    581.28    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.569;DB;DP=44;Dels=0.0;FS=6.769;HRun=3;HaplotypeScore=2.7286;MQ=59.48;MQ0=0;MQRankSum=-0.329;QD=13.21;ReadPosRankSum=-0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431822    GT:AD:DP:GQ:PL    0/1:24,20:44:99:611,0,792
11    64503179    rs553618    A    G    333.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=30.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431822    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:366,30,0
11    64503363    rs10897524    G    A    70.58    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=11;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;MQRankSum=0.248;QD=6.42;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377486    GT:AD:DP:GQ:PL    0/1:7,4:11:99:101,0,159
11    64503496    rs556356    A    G    382.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377486    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:415,30,0
11    64507315    rs550930    T    C    1467.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=29.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377485    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1501,126,0
11    64507680    rs547280    A    C    561.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377485    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:595,45,0
11    64507799    rs546323    G    C    141.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RASGRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377485    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:174,15,0
11    64509438    rs71581755    T    C    45.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PYGM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164139    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    64510250    rs116796696    C    T    53.91    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=13;Dels=0.0;FS=2.616;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.289;QD=4.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PYGM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164139    GT:AD:DP:GQ:PL    0/1:9,4:13:83.90:84,0,233
11    64511322    rs2073798    T    G    118.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PYGM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164139    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:151,12,0
11    64520374    rs565688    T    A    503.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PYGM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460413    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:537,45,0
11    64522066    rs625172    A    G    201.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PYGM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164139    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:235,21,0
11    64525216    rs589691    C    T    164.78    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=9.69;ReadPosRankSum=0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PYGM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164139    GT:AD:DP:GQ:PL    0/1:8,9:17:99:195,0,246
11    64525464    rs490980    C    T    103.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.32;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PYGM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164139    GT:AD:DP:GQ:PL    0/1:5,5:10:99:133,0,157
11    64525644    rs489192    G    T    681.26    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.944;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9566;MQ=59.49;MQ0=0;MQRankSum=-1.012;QD=15.14;ReadPosRankSum=-1.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PYGM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164139    GT:AD:DP:GQ:PL    0/1:21,24:45:99:711,0,692
11    64527080    rs477549    T    C    857.24    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=59;Dels=0.0;FS=5.593;HRun=3;HaplotypeScore=0.9789;MQ=59.22;MQ0=0;MQRankSum=-1.681;QD=14.53;ReadPosRankSum=0.962;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227503    GT:AD:DP:GQ:PL    0/1:26,33:59:99:887,0,839
11    64535357    rs575375    T    C    238.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.69;MQ0=0;QD=23.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413951    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:271,21,0
11    64535849    rs561158    C    T    507.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413951    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:541,42,0
11    64536866    rs484886    T    C    4774.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=59.48;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413951    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4775,355,0
11    64543927    rs34514973    G    GT    530.59    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.383;DB;DP=36;FS=6.835;HRun=1;HaplotypeScore=97.6407;IndelType=I;MQ=58.71;MQ0=0;MQRankSum=0.983;QD=14.74;ReadPosRankSum=0.317;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_64543887_64544098;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000416674    GT:AD:DP:GQ:PL    0/1:20,16:36:99:570,0,674
11    64544135    rs474707    C    T    429.52    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.283;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.066;QD=10.23;ReadPosRankSum=0.728;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227503    GT:AD:DP:GQ:PL    0/1:25,17:42:99:460,0,805
11    64559898    rs10897526    T    C    94.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MAP4K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467689    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
11    64563934    rs483544    A    G    1190.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=29.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MAP4K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439069    GT:AD:DP:GQ:PL    1/1:0,41:41:96.26:1223,96,0
11    64566771    rs474855    T    C    654.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=58.84;MQ0=0;QD=32.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MAP4K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439069    GT:AD:DP:GQ:PL    1/1:0,20:20:54.15:687,54,0
11    64567047    rs3832792    GCA    G    311.08    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=61.1334;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=0.495;QD=18.3;ReadPosRankSum=1.768;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MAP4K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444560    GT:AD:DP:GQ:PL    0/1:7,10:17:99:350,0,164
11    64572018    rs2959656    T    C    1015.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.23;MQ0=0;QD=27.44;SNPEFF_AMINO_ACID_CHANGE=T486A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64570988_64572288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377316    GT:AD:DP:GQ:PL    1/1:0,37:37:93.24:1048,93,0
11    64572403    rs654440    C    G    241.21    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.037;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6113;MQ=59.25;MQ0=0;MQRankSum=0.36;QD=7.78;ReadPosRankSum=0.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413626    GT:AD:DP:GQ:PL    0/1:19,12:31:99:271,0,574
11    64572557    rs540012    A    G    971.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_AMINO_ACID_CHANGE=H398;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64572506_64572670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377321    GT:AD:DP:GQ:PL    1/1:0,32:33:78.24:1004,78,0
11    64572602    rs2071313    G    A    368.42    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=27;Dels=0.0;FS=9.204;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=13.65;ReadPosRankSum=1.043;SNPEFF_AMINO_ACID_CHANGE=D383;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64572506_64572670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377321    GT:AD:DP:GQ:PL    0/1:13,14:27:99:398,0,413
11    64591972    rs10792447    T    C    852.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=L1543;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64590859_64592001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342711    GT:AD:DP:GQ:PL    1/1:0,26:26:66.19:886,66,0
11    64594490    rs57772251    A    G    1068.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=43.9;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491280    GT:AD:DP:GQ:PL    1/1:0,34:34:93.26:1101,93,0
11    64596916    rs10897529    C    T    842.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;QD=31.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468512    GT:AD:DP:GQ:PL    1/1:1,26:27:72.21:876,72,0
11    64597506    rs3741395    T    C    303.06    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.862;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.339;QD=12.63;ReadPosRankSum=-0.585;SNPEFF_AMINO_ACID_CHANGE=Q1135R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64596943_64597542;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342711    GT:AD:DP:GQ:PL    0/1:13,11:24:99:333,0,322
11    64598944    rs684071    A    G    704.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468512    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:738,57,0
11    64599139    rs11231887    C    T    136.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=9.77;ReadPosRankSum=-0.323;SNPEFF_AMINO_ACID_CHANGE=A1048T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64598977_64599193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342711    GT:AD:DP:GQ:PL    0/1:8,6:14:99:167,0,292
11    64599657    rs11607853    G    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468512    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    64602782    rs11605623    C    T    6351.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=191;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.2161;MQ=58.8;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342711    GT:AD:DP:GQ:PL    1/1:0,191:191:99:6352,470,0
11    64603844    .    A    ACTCACCCAC    1958.40    PASS    AC=2;AF=1.00;AN=2;DP=30;FS=0.0;HRun=0;HaplotypeScore=192.1197;IndelType=I;MQ=44.32;MQ0=0;QD=65.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342711    GT:AD:DP:GQ:PL    1/1:17,12:30:51.17:2000,51,0
11    64606765    rs676977    T    C    411.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342711    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:444,33,0
11    64621856    rs3897618    A    G    609.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.43;SNPEFF_AMINO_ACID_CHANGE=P415;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64621679_64621921;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421303    GT:AD:DP:GQ:PL    1/1:0,26:26:57.13:642,57,0
11    64622419    rs2007512    T    G    986.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433803    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1020,75,0
11    64622502    rs2007521    C    T    113.53    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=16.22;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433803    GT:AD:DP:GQ:PL    0/1:3,4:7:95.07:144,0,95
11    64622869    rs10897533    G    C    843.36    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=3.919;DB;DP=58;Dels=0.0;FS=2.596;HRun=2;HaplotypeScore=1.4942;MQ=59.6;MQ0=0;MQRankSum=0.04;QD=14.54;ReadPosRankSum=1.189;SNPEFF_AMINO_ACID_CHANGE=L199;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64622794_64622958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421510    GT:AD:DP:GQ:PL    0/1:30,28:58:99:873,0,815
11    64645871    rs1211284    A    G    655.26    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.11;MQ0=0;MQRankSum=-0.65;QD=13.94;ReadPosRankSum=-0.991;SNPEFF_AMINO_ACID_CHANGE=A22;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64645533_64646191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320631    GT:AD:DP:GQ:PL    0/1:22,25:47:99:685,0,683
11    64662849    rs77802938    A    G    100.34    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=9.12;ReadPosRankSum=0.597;SNPEFF_AMINO_ACID_CHANGE=D1831;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64662762_64662914;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377264    GT:AD:DP:GQ:PL    0/1:7,4:11:99:130,0,185
11    64664841    rs117201171    A    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227459    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    64665358    rs61742063    T    G    287.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=60.0;MQ0=0;MQRankSum=-0.215;QD=11.97;ReadPosRankSum=-0.585;SNPEFF_AMINO_ACID_CHANGE=G1649;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64665311_64665446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377264    GT:AD:DP:GQ:PL    0/1:12,12:24:99:317,0,366
11    64665394    rs61741079    T    C    338.69    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.456;QD=16.93;ReadPosRankSum=0.228;SNPEFF_AMINO_ACID_CHANGE=E1637;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64665311_64665446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377264    GT:AD:DP:GQ:PL    0/1:9,11:20:99:369,0,276
11    64665502    rs11827610    T    G    540.58    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.368;DB;DP=43;Dels=0.0;FS=1.363;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.013;QD=12.57;ReadPosRankSum=0.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227459    GT:AD:DP:GQ:PL    0/1:24,19:43:99:571,0,721
11    64669417    rs682673    T    C    1214.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.4434;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227459    GT:AD:DP:GQ:PL    1/1:0,37:37:96.28:1247,96,0
11    64677105    rs79193402    C    T    593.94    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=39;Dels=0.0;FS=3.187;HRun=0;HaplotypeScore=1.612;MQ=59.41;MQ0=0;MQRankSum=-0.66;QD=15.23;ReadPosRankSum=-0.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461701    GT:AD:DP:GQ:PL    0/1:19,20:39:99:624,0,623
11    64677293    rs656195    G    C    673.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=57.05;MQ0=0;QD=28.08;SNPEFF_AMINO_ACID_CHANGE=P656R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64677153_64677396;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377264    GT:AD:DP:GQ:PL    1/1:0,24:24:60.14:707,60,0
11    64678920    rs638583    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461701    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    64680819    rs618006    G    A    196.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=D215;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64680738_64680873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227459    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
11    64684283    rs643949    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227459    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    64700527    .    G    C    373.28    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DP=27;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.9734;MQ=58.97;MQ0=0;MQRankSum=0.315;QD=13.83;ReadPosRankSum=-0.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279168    GT:AD:DP:GQ:PL    0/1:13,14:27:99:403,0,438
11    64700767    rs675090    G    A    636.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530287    GT:AD:DP:GQ:PL    1/1:0,18:18:51.13:670,51,0
11    64702200    rs673995    C    T    402.66    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.795;DB;DP=27;Dels=0.0;FS=1.906;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.103;QD=14.91;ReadPosRankSum=0.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301896    GT:AD:DP:GQ:PL    0/1:14,13:27:99:433,0,335
11    64702765    rs2307669    C    CTCTG    974.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=41.2519;IndelType=I;MQ=54.32;MQ0=0;QD=74.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301896    GT:AD:DP:GQ:PL    1/1:1,11:13:39.13:1016,39,0
11    64707978    rs586616    A    G    633.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301896    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:667,57,0
11    64717801    rs71049671    C    CAA    136.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=19;HaplotypeScore=119.4646;IndelType=I;MQ=45.88;MQ0=0;QD=9.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301896    GT:AD:DP:GQ:PL    1/1:4,6:14:20.92:178,21,0
11    64726701    rs602404    A    C    204.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301896    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
11    64789194    rs664226    T    C    258.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.727;DB;DP=24;Dels=0.0;FS=1.77;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.435;QD=10.77;ReadPosRankSum=-0.673;SNPEFF_AMINO_ACID_CHANGE=V114A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64789193_64789632;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533729    GT:AD:DP:GQ:PL    0/1:14,10:24:99:288,0,497
11    64794918    rs3832791    T    TG    952.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=2;HaplotypeScore=106.5886;IndelType=I;MQ=58.0;MQ0=0;QD=39.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301886    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:994,69,0
11    64799789    rs532373    C    T    851.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352068    GT:AD:DP:GQ:PL    1/1:0,24:24:69.19:885,69,0
11    64799894    rs678614    A    C    950.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352068    GT:AD:DP:GQ:PL    1/1:0,32:32:75.22:984,75,0
11    64799998    rs534236    T    C    1031.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=L36P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64799903_64800023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525648    GT:AD:DP:GQ:PL    1/1:0,33:33:87.24:1065,87,0
11    64802267    rs6591869    G    A    532.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352068    GT:AD:DP:GQ:PL    1/1:0,15:16:42.14:566,42,0
11    64803351    rs562590    A    G    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524831    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    64807294    rs653111    G    A    365.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAALADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532450    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:399,33,0
11    64809090    rs12271134    T    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.55;SNPEFF_AMINO_ACID_CHANGE=L109R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64808376_64809338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAC3D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398846    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
11    64814115    .    G    A    45.05    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAALADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532432    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    64820654    rs477539    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAALADL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339885    GT:AD:DP:GQ:PL    1/1:0,4:5:11.99:123,12,0
11    64851305    rs947799    C    T    230.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP003068.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334821    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:263,21,0
11    64851453    rs35819335    CT    C    650.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=46.3687;IndelType=D;MQ=60.6;MQ0=0;QD=36.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP003068.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334821    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:693,54,0
11    64852421    rs531178    T    C    321.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP003068.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334821    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:354,30,0
11    64878661    rs625004    T    C    81.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.48;SNPEFF_AMINO_ACID_CHANGE=L80P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64878633_64878709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530673    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
11    64883864    rs1706937    A    G    1674.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=31.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279281    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1707,138,0
11    64884052    rs1546532    G    A    1294.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5983;MQ=58.74;MQ0=0;QD=34.98;SNPEFF_AMINO_ACID_CHANGE=A358;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64883875_64885170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310597    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1327,99,0
11    64897453    rs1206196    C    T    172.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPL49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279242    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
11    64898357    rs11369296    G    GC    1327.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=2;HaplotypeScore=83.5541;IndelType=I;MQ=60.6;MQ0=0;QD=39.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPL49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279242    GT:AD:DP:GQ:PL    1/1:0,33:34:96.32:1370,96,0
11    64942416    rs11227144    G    T    93.84    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.37;MQ0=0;MQRankSum=-1.92;QD=11.73;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP003068.23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528551    GT:AD:DP:GQ:PL    0/1:3,5:8:99:124,0,103
11    64942483    rs1195964    A    G    1301.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.46;MQ0=0;MQRankSum=0.887;QD=31.74;ReadPosRankSum=-0.972;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AP003068.23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528551    GT:AD:DP:GQ:PL    1/1:1,40:41:77:1334,77,0
11    64950843    rs2277307    A    T    148.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=15;Dels=0.0;FS=5.426;HRun=2;HaplotypeScore=0.734;MQ=58.75;MQ0=0;MQRankSum=-0.412;QD=9.88;ReadPosRankSum=1.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532285    GT:AD:DP:GQ:PL    0/1:9,6:15:99:178,0,304
11    64950970    rs17583    C    T    270.45    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=0.769;DB;DP=37;Dels=0.0;FS=3.182;HRun=1;HaplotypeScore=1.5774;MQ=59.38;MQ0=0;MQRankSum=0.462;QD=7.31;ReadPosRankSum=0.256;SNPEFF_AMINO_ACID_CHANGE=I121;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_64950945_64951063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279247    GT:AD:DP:GQ:PL    0/1:27,10:37:99:300,0,744
11    64954881    rs3832790    TC    T    128.60    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=16.3626;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=-0.922;QD=18.37;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526966    GT:AD:DP:GQ:PL    0/1:2,5:7:68.93:168,0,69
11    64972354    rs2271450    A    T    395.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.707;DB;DP=40;Dels=0.0;FS=2.938;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.516;QD=9.89;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259755    GT:AD:DP:GQ:PL    0/1:24,16:40:99:426,0,675
11    64977424    rs2271448    C    T    691.52    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=3.349;DB;DP=73;Dels=0.0;FS=2.492;HRun=0;HaplotypeScore=3.5004;MQ=58.73;MQ0=0;MQRankSum=0.188;QD=9.47;ReadPosRankSum=-0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525013    GT:AD:DP:GQ:PL    0/1:46,27:73:99:722,0,1243
11    64977644    rs625750    C    T    227.29    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.096;DB;DP=21;Dels=0.0;FS=1.808;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.178;QD=10.82;ReadPosRankSum=0.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525013    GT:AD:DP:GQ:PL    0/1:12,9:21:99:257,0,391
11    64977937    rs542380    A    G    830.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525013    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:864,63,0
11    64981472    rs239258    G    C    95.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=16;Dels=0.0;FS=6.008;HRun=1;HaplotypeScore=0.0;MQ=52.32;MQ0=0;MQRankSum=1.247;QD=5.99;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259755    GT:AD:DP:GQ:PL    0/1:10,6:16:99:126,0,184
11    64981522    rs11605576    C    A    135.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=2.047;QD=11.25;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259755    GT:AD:DP:GQ:PL    0/1:6,6:12:99:165,0,142
11    64981587    rs11605632    G    A    77.38    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=11.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259755    GT:AD:DP:GQ:PL    0/1:3,4:7:88.44:107,0,88
11    64981837    rs12420456    C    T    214.99    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=13.44;ReadPosRankSum=1.905;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259755    GT:AD:DP:GQ:PL    0/1:7,9:16:99:245,0,169
11    64981853    rs239259    G    T    65.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=5.021;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=4.4;ReadPosRankSum=-0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259755    GT:AD:DP:GQ:PL    0/1:10,5:15:95.96:96,0,263
11    64990041    rs514076    G    C    2246.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454680    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2279,169,0
11    64993195    rs10633296    C    CAGTA    2265.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=90.6627;IndelType=I;MQ=56.93;MQ0=0;QD=75.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534471    GT:AD:DP:GQ:PL    1/1:0,28:30:90.29:2307,90,0
11    64993357    rs239261    A    G    69.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534471    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
11    65000478    rs2904978    C    T    254.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454680    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
11    65000719    rs2904979    C    T    901.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=23.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454680    GT:AD:DP:GQ:PL    1/1:1,37:38:78.19:935,78,0
11    65003812    rs625427    T    C    115.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454680    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
11    65004301    rs2904982    G    T    2122.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=35.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454680    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2155,162,0
11    65004386    rs56657874    C    T    665.71    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=3.226;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.874;QD=13.59;ReadPosRankSum=0.573;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC22A20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454680    GT:AD:DP:GQ:PL    0/1:27,22:49:99:696,0,676
11    65109233    rs629710    A    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252268    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    65118971    rs620888    T    C    121.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252268    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
11    65144075    rs624307    T    C    1922.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.24;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=M120V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65142663_65144146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377152    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1956,156,0
11    65146734    rs66528169    C    G    343.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=31.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524438    GT:AD:DP:GQ:PL    1/1:0,11:11:33.07:377,33,0
11    65147862    rs573864    C    G    74.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529431    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
11    65154279    rs2957264    C    G    120.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317568    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
11    65156636    rs668117    T    C    194.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531296    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:228,18,0
11    65178620    rs2957274    G    A    207.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317568    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:240,18,0
11    65211979    rs12803915    G    A    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=non_coding;SNPEFF_GENE_NAME=AP000769.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528299    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    65271832    rs3200401    C    T    483.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=24.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=non_coding;SNPEFF_GENE_NAME=MALAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508832    GT:AD:DP:GQ:PL    1/1:0,20:20:39.10:517,39,0
11    65302893    rs947791    G    A    901.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=27.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301873    GT:AD:DP:GQ:PL    1/1:0,33:33:72.23:934,72,0
11    65303021    rs3831381    TCA    T    210.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=26.0952;IndelType=D;MQ=57.28;MQ0=0;QD=30.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301873    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:252,18,0
11    65308186    .    A    ACAGGAGGGGCGGGGCCTACAGGAGGGGCGGGGCCT    571.64    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DP=11;FS=0.0;HRun=0;HaplotypeScore=265.4904;IndelType=I;MQ=44.21;MQ0=0;MQRankSum=0.747;QD=51.97;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525443    GT:AD:DP:GQ:PL    0/1:4,4:11:23.88:611,0,24
11    65308187    .    C    G    94.16    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9939;MQ=44.21;MQ0=0;MQRankSum=-0.597;QD=8.56;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525443    GT:AD:DP:GQ:PL    0/1:7,4:11:99:124,0,180
11    65314814    rs66973976    CG    C    635.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=5;HaplotypeScore=148.2376;IndelType=D;MQ=61.34;MQ0=0;QD=27.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524798    GT:AD:DP:GQ:PL    1/1:0,23:23:62.99:678,63,0
11    65314830    rs58621819    A    T    561.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.4;MQ0=0;MQRankSum=1.614;QD=18.71;ReadPosRankSum=0.538;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524798    GT:AD:DP:GQ:PL    1/1:1,29:30:60.03:594,60,0
11    65319265    rs11227221    T    C    66.61    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=6.06;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524798    GT:AD:DP:GQ:PL    0/1:7,4:11:96.61:97,0,212
11    65320780    rs4244811    G    A    206.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=17.21;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301873    GT:AD:DP:GQ:PL    0/1:4,8:12:95.33:236,0,95
11    65338034    rs1151496    A    G    432.92    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.477;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.57;MQ0=0;MQRankSum=1.333;QD=10.07;ReadPosRankSum=-2.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSSCA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309328    GT:AD:DP:GQ:PL    0/1:24,19:43:99:463,0,639
11    65347297    rs5792362    C    CA    131.28    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=19;FS=0.0;HRun=15;HaplotypeScore=196.6109;IndelType=I;MQ=49.38;MQ0=0;MQRankSum=-0.592;QD=6.91;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531106    GT:AD:DP:GQ:PL    0/1:7,10:19:17.47:170,0,17
11    65347636    rs1194100    G    C    1044.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_AMINO_ACID_CHANGE=V133L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65347552_65347730;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309295    GT:AD:DP:GQ:PL    1/1:0,32:32:81.23:1078,81,0
11    65349063    rs3741380    G    A    211.52    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.101;QD=16.27;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=R307Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65349010_65351236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309295    GT:AD:DP:GQ:PL    0/1:6,7:13:99:242,0,154
11    65349756    rs6591182    T    G    105.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.24;ReadPosRankSum=-1.638;SNPEFF_AMINO_ACID_CHANGE=V538G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65349010_65351236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309295    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,129
11    65349849    rs1194099    A    T    608.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=D569V;SNPEFF_CODON_CHANGE=gAc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65349010_65351236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309295    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:641,51,0
11    65352062    rs2298615    C    T    503.67    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.035;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=2.179;QD=15.26;ReadPosRankSum=-0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309295    GT:AD:DP:GQ:PL    0/1:17,16:33:99:534,0,508
11    65357697    rs1151503    A    G    129.34    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.452;QD=8.62;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533237    GT:AD:DP:GQ:PL    0/1:8,6:15:99:159,0,288
11    65359625    rs4261292    C    G    261.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7552;MQ=57.39;MQ0=0;QD=29.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340313    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:294,24,0
11    65360356    rs2510077    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309295    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    65360708    .    C    T    231.96    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.377;QD=12.89;ReadPosRankSum=-1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309295    GT:AD:DP:GQ:PL    0/1:8,10:18:99:262,0,209
11    65366847    rs10791820    C    T    85.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534432    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
11    65367253    rs4326800    C    T    109.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=57.05;MQ0=0;MQRankSum=1.638;QD=13.68;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309100    GT:AD:DP:GQ:PL    0/1:4,4:8:89.63:139,0,90
11    65374495    rs2306361    A    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526293    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    65380916    rs2004649    G    A    421.48    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.397;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6649;MQ=58.11;MQ0=0;MQRankSum=0.466;QD=11.39;ReadPosRankSum=1.052;SNPEFF_AMINO_ACID_CHANGE=G104;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65380489_65381713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309100    GT:AD:DP:GQ:PL    0/1:18,19:37:99:451,0,457
11    65383896    rs7947140    G    C    556.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_AMINO_ACID_CHANGE=V38;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65383244_65383935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNXL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355703    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:589,45,0
11    65384727    rs12790427    C    T    273.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=20;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.567;QD=13.67;ReadPosRankSum=0.643;SNPEFF_AMINO_ACID_CHANGE=P116;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65384721_65384820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNXL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355703    GT:AD:DP:GQ:PL    0/1:10,10:20:99:303,0,282
11    65385606    rs1151489    A    G    1013.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=Q258R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65385411_65386538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNXL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355703    GT:AD:DP:GQ:PL    1/1:0,31:31:84.25:1047,84,0
11    65387301    .    G    A    398.11    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DP=16;Dels=0.0;FS=2.869;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=24.88;ReadPosRankSum=-0.303;SNPEFF_AMINO_ACID_CHANGE=A636T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65387225_65387403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNXL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355703    GT:AD:DP:GQ:PL    0/1:4,12:16:57.57:428,0,58
11    65389631    rs1144789    A    G    63.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.07;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355703    GT:AD:DP:GQ:PL    0/1:3,4:7:93.52:94,0,105
11    65391317    rs12801636    G    A    224.84    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=16;Dels=0.0;FS=2.307;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=14.05;ReadPosRankSum=-0.488;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531045    GT:AD:DP:GQ:PL    0/1:6,10:16:99:255,0,198
11    65412467    rs2306364    G    A    1343.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.92;MQ0=0;QD=31.23;SNPEFF_AMINO_ACID_CHANGE=A342;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65412426_65412600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394224    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1376,102,0
11    65415028    rs4930157    T    G    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=7.22;SNPEFF_AMINO_ACID_CHANGE=T633;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65414855_65415129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394227    GT:AD:DP:GQ:PL    1/1:0,5:5:6.01:67,6,0
11    65423082    rs1144792    G    A    361.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_AMINO_ACID_CHANGE=S370;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65421072_65423233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525693    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:395,30,0
11    65427568    rs732072    G    A    322.17    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=2.103;DB;DP=36;Dels=0.0;FS=3.784;HRun=0;HaplotypeScore=1.7791;MQ=52.65;MQ0=0;MQRankSum=1.512;QD=8.95;ReadPosRankSum=-0.712;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525301    GT:AD:DP:GQ:PL    0/1:23,13:36:99:352,0,546
11    65480090    rs2236682    G    T    134.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.668;QD=13.47;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341318    GT:AD:DP:GQ:PL    0/1:5,5:10:99:165,0,166
11    65480596    rs616250    A    G    1091.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.1;MQ0=0;QD=30.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNASEH2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308418    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1124,87,0
11    65480768    rs4244812    A    G    122.42    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.015;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.105;QD=5.1;ReadPosRankSum=-0.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNASEH2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308418    GT:AD:DP:GQ:PL    0/1:17,7:24:99:152,0,438
11    65480791    rs551115    A    G    818.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=34.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532042    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:852,66,0
11    65481166    rs1151500    T    C    1157.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525204    GT:AD:DP:GQ:PL    1/1:0,37:37:93.25:1190,93,0
11    65483981    rs573589    C    T    138.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=15.37;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525204    GT:AD:DP:GQ:PL    0/1:4,5:9:99:168,0,140
11    65484569    rs563427    A    G    246.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525204    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
11    65487503    rs182000627    C    T    1012.65    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=2.593;DB;DP=68;Dels=0.0;FS=2.197;HRun=1;HaplotypeScore=1.748;MQ=59.66;MQ0=0;MQRankSum=-0.033;QD=14.89;ReadPosRankSum=-0.099;SNPEFF_AMINO_ACID_CHANGE=G161R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65487192_65487635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNASEH2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527610    GT:AD:DP:GQ:PL    0/1:31,37:68:99:1043,0,885
11    65554680    rs10896044    C    G    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531907    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    65561294    .    C    T    40.99    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335987    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
11    65561468    rs644740    C    T    288.39    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=26;Dels=0.0;FS=5.226;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.779;QD=11.09;ReadPosRankSum=-0.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335987    GT:AD:DP:GQ:PL    0/1:15,11:26:99:318,0,433
11    65561805    rs56019505    T    G    266.30    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=24.21;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531907    GT:AD:DP:GQ:PL    0/1:3,8:11:87.50:296,0,87
11    65617113    rs67093299    AG    A    400.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=5;HaplotypeScore=38.6717;IndelType=D;MQ=60.0;MQ0=0;QD=26.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531795    GT:AD:DP:GQ:PL    1/1:2,13:15:39.11:443,39,0
11    65621057    rs656040    T    C    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308162    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    65623347    rs652021    G    A    1218.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=35.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526975    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1252,96,0
11    65623519    rs4621    G    A    2952.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.377;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.75;MQ0=0;MQRankSum=1.544;QD=31.75;ReadPosRankSum=-1.13;SNPEFF_AMINO_ACID_CHANGE=D104;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65623406_65623713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CFL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534769    GT:AD:DP:GQ:PL    1/1:2,91:93:99:2986,201,0
11    65628334    rs13817    G    A    173.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_AMINO_ACID_CHANGE=R102H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65628146_65628359;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUS81;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529857    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
11    65629932    rs659857    T    C    1017.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=A104;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65629915_65630000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUS81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525768    GT:AD:DP:GQ:PL    1/1:0,34:34:81.25:1051,81,0
11    65629934    rs545500    G    C    927.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=27.27;SNPEFF_AMINO_ACID_CHANGE=R105P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65629915_65630000;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUS81;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525768    GT:AD:DP:GQ:PL    1/1:0,34:34:78.22:960,78,0
11    65630101    rs633877    G    C    32.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307998    GT:AD:DP:GQ:PL    1/1:0,4:4:6.01:64,6,0
11    65630698    rs538394    T    G    427.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307998    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:461,36,0
11    65631167    rs648732    C    T    797.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=A237;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65631071_65631192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUS81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533035    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:830,63,0
11    65631879    rs630758    C    A    267.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307998    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:301,24,0
11    65631881    rs630755    G    A    283.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307998    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
11    65631973    rs630303    G    A    831.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=R280;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65631968_65632084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUS81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533035    GT:AD:DP:GQ:PL    1/1:0,26:26:63.21:864,63,0
11    65632262    rs558114    G    T    690    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=27.6;SNPEFF_AMINO_ACID_CHANGE=T341;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65632191_65632286;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUS81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533035    GT:AD:DP:GQ:PL    1/1:0,25:25:54.16:723,54,0
11    65635559    rs594689    G    A    611.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=33.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526624    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:645,54,0
11    65636053    rs601314    T    C    1096.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.47;MQ0=0;QD=23.32;SNPEFF_AMINO_ACID_CHANGE=I259V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65635981_65636100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307998    GT:AD:DP:GQ:PL    1/1:0,47:47:96.22:1129,96,0
11    65637076    rs570387    T    C    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526624    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    65637273    rs501630    A    G    1041.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526624    GT:AD:DP:GQ:PL    1/1:0,34:34:90.25:1074,90,0
11    65637984    rs630394    C    G    558.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529870    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:592,45,0
11    65638719    rs633800    G    A    1544.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2707;MQ=58.36;MQ0=0;QD=27.09;SNPEFF_AMINO_ACID_CHANGE=H92;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65638628_65638834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFEMP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307998    GT:AD:DP:GQ:PL    1/1:1,54:57:99:1577,123,0
11    65647260    rs658524    A    G    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FIBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338369    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    65649774    rs604630    A    G    1688.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_AMINO_ACID_CHANGE=S138G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65649646_65649800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSW;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526034    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1721,135,0
11    65649984    rs687672    T    C    766.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.92;SNPEFF_AMINO_ACID_CHANGE=D174;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65649901_65649997;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSW;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526034    GT:AD:DP:GQ:PL    1/1:0,23:24:63.20:799,63,0
11    65651830    rs658938    A    G    400.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSW;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307886    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:434,33,0
11    65653564    rs180950896    G    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSW;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307886    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    65655259    rs34462984    G    GCC    1453.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=2;HaplotypeScore=61.1851;IndelType=I;MQ=61.53;MQ0=0;QD=51.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSW;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307886    GT:AD:DP:GQ:PL    1/1:1,27:28:81.28:1496,81,0
11    65684855    rs9326360    A    G    1275.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.347;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.95;MQ0=0;MQRankSum=0.866;QD=31.89;ReadPosRankSum=0.953;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312515    GT:AD:DP:GQ:PL    1/1:1,39:40:67.69:1308,68,0
11    65684929    rs9667389    C    T    2368.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=29.98;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312515    GT:AD:DP:GQ:PL    1/1:0,78:79:99:2401,184,0
11    65685225    rs7947504    T    C    1080.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=Q154R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65684304_65685831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf68;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530188    GT:AD:DP:GQ:PL    1/1:0,31:31:87.27:1114,87,0
11    65713207    rs9795469    T    C    1423.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=TSGA10IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528291    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1457,117,0
11    65733393    rs688862    C    T    1310.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=T100;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65733358_65733457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542816    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1343,99,0
11    65744247    rs622779    G    A    75.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312397    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:106,0,27
11    65744597    rs7952056    C    T    233.60    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=17;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.6651;MQ=58.63;MQ0=0;MQRankSum=0.998;QD=13.74;ReadPosRankSum=-0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312397    GT:AD:DP:GQ:PL    0/1:8,9:17:99:264,0,241
11    65765866    rs540584    C    G    159.43    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=12.26;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF1AD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526449    GT:AD:DP:GQ:PL    0/1:5,8:13:99:189,0,171
11    65767153    rs507672    A    G    575.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.135;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.14;MQ0=0;MQRankSum=-0.849;QD=21.33;ReadPosRankSum=2.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF1AD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526449    GT:AD:DP:GQ:PL    0/1:9,18:27:99:606,0,246
11    65767215    rs506873    G    T    338.41    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=18.8;ReadPosRankSum=-1.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF1AD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526449    GT:AD:DP:GQ:PL    0/1:7,11:18:99:368,0,227
11    65770658    rs1786172    A    G    254.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.185;QD=21.25;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312175    GT:AD:DP:GQ:PL    0/1:3,9:12:85.79:285,0,86
11    65779590    rs1131544    C    T    86.69    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=17.34;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=D25;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65779312_65779755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312134    GT:AD:DP:GQ:PL    0/1:1,4:5:14.60:117,0,15
11    65780702    rs9667817    A    G    1175.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.72;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312106    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1209,105,0
11    65787666    rs3829937    G    A    997.94    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=3.675;DB;DP=57;Dels=0.0;FS=1.214;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.89;QD=17.51;ReadPosRankSum=-0.313;SNPEFF_AMINO_ACID_CHANGE=A690;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65787611_65787671;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312106    GT:AD:DP:GQ:PL    0/1:26,31:57:99:1028,0,663
11    65788072    rs3814747    C    T    757.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_AMINO_ACID_CHANGE=V652I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65788035_65788098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312106    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:790,57,0
11    65790527    rs2845570    G    T    563.67    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.204;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.032;QD=15.66;ReadPosRankSum=1.521;SNPEFF_AMINO_ACID_CHANGE=R408;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65790320_65790532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312106    GT:AD:DP:GQ:PL    0/1:19,17:36:99:594,0,528
11    65810749    rs7937692    T    C    390.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=V175;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_65809423_65811148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAL3ST3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312006    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:423,33,0
11    65827700    rs9326368    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SF3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524475    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    65978396    rs10791858    A    G    452.65    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4538;MQ=58.67;MQ0=0;MQRankSum=-1.86;QD=12.93;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320580    GT:AD:DP:GQ:PL    0/1:18,17:35:99:483,0,563
11    65978453    rs10791859    C    T    1022.14    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.626;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5934;MQ=59.24;MQ0=0;MQRankSum=-1.588;QD=12.03;ReadPosRankSum=-0.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320580    GT:AD:DP:GQ:PL    0/1:49,35:85:99:1052,0,1720
11    65983522    rs548858    A    G    322.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533756    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:356,30,0
11    65997898    rs561948    A    G    280.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320580    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:314,27,0
11    66001418    rs2236651    C    T    319.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.335;DB;DP=27;Dels=0.0;FS=1.545;HRun=0;HaplotypeScore=0.9995;MQ=59.14;MQ0=0;MQRankSum=-0.623;QD=11.82;ReadPosRankSum=-0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320580    GT:AD:DP:GQ:PL    0/1:15,12:27:99:349,0,444
11    66001869    rs10896104    C    T    69.24    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.65;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528935    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,158
11    66001878    rs4393319    A    T    75.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.8;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528935    GT:AD:DP:GQ:PL    0/1:3,4:7:91.89:106,0,92
11    66002681    rs2236652    G    A    30.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.16;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528935    GT:AD:DP:GQ:PL    0/1:4,2:6:60.97:61,0,122
11    66010633    rs524268    T    C    1156.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PACS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525798    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1190,93,0
11    66029130    rs572827    G    C    352.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316924    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:385,30,0
11    66031450    rs525698    T    C    1025.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440228    GT:AD:DP:GQ:PL    1/1:0,31:31:90.24:1058,90,0
11    66031660    rs1151539    C    T    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.54;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=D223;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66031517_66031690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394065    GT:AD:DP:GQ:PL    0/1:3,3:6:69.25:69,0,74
11    66032390    rs528842    G    A    185.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.568;QD=18.55;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440228    GT:AD:DP:GQ:PL    0/1:4,6:10:99:216,0,111
11    66033301    rs474005    C    T    374.23    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.56;DB;DP=25;Dels=0.0;FS=9.356;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=14.97;ReadPosRankSum=0.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440228    GT:AD:DP:GQ:PL    0/1:11,14:25:99:404,0,351
11    66033430    rs2276036    C    T    200.75    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.119;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7313;MQ=58.13;MQ0=0;MQRankSum=0.424;QD=8.03;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=P378S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66033325_66033483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394065    GT:AD:DP:GQ:PL    0/1:13,8:25:99:231,0,398
11    66040053    rs555826    A    G    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316924    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:126,9,0
11    66043742    rs3831389    CCTT    C    282.73    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=49.7252;IndelType=D;MQ=54.94;MQ0=0;MQRankSum=-0.831;QD=23.56;ReadPosRankSum=-1.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311445    GT:AD:DP:GQ:PL    0/1:5,7:12:99:322,0,310
11    66050062    rs147449169    C    T    68.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.16;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359461    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:99,0,30
11    66050712    rs4073582    G    A    1000.74    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.559;DB;DP=87;Dels=0.0;FS=0.923;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.304;QD=11.5;ReadPosRankSum=-1.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534826    GT:AD:DP:GQ:PL    0/1:48,39:87:99:1031,0,1500
11    66050948    rs3016315    C    T    902.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534826    GT:AD:DP:GQ:PL    1/1:0,27:27:78.20:935,78,0
11    66052832    rs2282568    C    G    785.44    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.97;DB;DP=67;Dels=0.0;FS=4.729;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.994;QD=11.72;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311445    GT:AD:DP:GQ:PL    0/1:34,33:67:99:815,0,1051
11    66056457    rs7945723    G    A    107.25    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=15.32;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNIH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311445    GT:AD:DP:GQ:PL    0/1:1,6:7:24.96:137,0,25
11    66099987    rs1784029    C    T    1385.93    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.669;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4637;MQ=59.33;MQ0=0;MQRankSum=1.02;QD=13.46;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=A538;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66099694_66100223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530056    GT:AD:DP:GQ:PL    0/1:54,49:103:99:1416,0,1344
11    66100152    rs1784030    T    C    1606.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=E483;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66099694_66100223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530056    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1639,129,0
11    66101974    rs3016317    C    T    324.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359957    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:357,27,0
11    66101978    rs10896110    G    A    90.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=9.01;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359957    GT:AD:DP:GQ:PL    0/1:5,4:10:99:120,0,146
11    66102807    rs10444359    G    A    55.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=9.27;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359957    GT:AD:DP:GQ:PL    0/1:3,3:6:85.61:86,0,88
11    66103046    rs3016763    C    T    497.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359957    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:530,42,0
11    66104993    rs3116068    C    T    157.22    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=13.1;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525127    GT:AD:DP:GQ:PL    0/1:5,7:12:99:187,0,112
11    66105194    rs1052566    G    A    66.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.36;ReadPosRankSum=-1.517;SNPEFF_AMINO_ACID_CHANGE=A273V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66104804_66105278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425825    GT:AD:DP:GQ:PL    0/1:5,3:8:96.90:97,0,184
11    66107527    rs1785633    C    A    138.14    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=12;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.8321;MQ=58.05;MQ0=0;MQRankSum=-2.072;QD=11.51;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525127    GT:AD:DP:GQ:PL    0/1:5,7:12:99:168,0,142
11    66107674    rs1784035    A    G    819.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=D182;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66107592_66107684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359957    GT:AD:DP:GQ:PL    1/1:0,26:26:66.19:852,66,0
11    66108660    rs947978    C    T    418.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.043;DB;DP=33;Dels=0.0;FS=10.961;HRun=0;HaplotypeScore=0.5784;MQ=59.3;MQ0=0;MQRankSum=0.958;QD=12.67;ReadPosRankSum=0.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311181    GT:AD:DP:GQ:PL    0/1:18,15:33:99:448,0,560
11    66108894    rs2236679    G    C    1037.61    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=5.358;DB;DP=72;Dels=0.0;FS=6.056;HRun=3;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.535;QD=14.41;ReadPosRankSum=-0.904;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311181    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1068,0,990
11    66131906    rs7125100    A    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.92;MQ0=0;QD=15.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-867G23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531602    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
11    66133311    rs4930358    T    C    828.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-867G23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531602    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:862,66,0
11    66133336    rs2279861    A    G    454.20    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.182;DB;DP=39;Dels=0.0;FS=3.928;HRun=0;HaplotypeScore=1.8519;MQ=59.41;MQ0=0;MQRankSum=0.146;QD=11.65;ReadPosRankSum=0.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-867G23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531602    GT:AD:DP:GQ:PL    0/1:20,19:39:99:484,0,530
11    66134085    rs8187658    C    T    135.39    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=9.03;ReadPosRankSum=0.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-867G23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531602    GT:AD:DP:GQ:PL    0/1:9,6:15:99:165,0,252
11    66134144    rs1344410    A    G    174.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-867G23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531602    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
11    66135179    rs2279862    C    T    208.68    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.069;DB;DP=17;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=12.28;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-867G23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531602    GT:AD:DP:GQ:PL    0/1:9,8:17:99:239,0,272
11    66135898    rs2292123    T    C    296.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-867G23.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531602    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:330,24,0
11    66138894    rs7946434    G    C    117.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC29A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311161    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
11    66206169    rs11110    C    T    254.45    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.003;QD=23.13;ReadPosRankSum=-1.768;SNPEFF_AMINO_ACID_CHANGE=V19;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66206103_66206319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310999    GT:AD:DP:GQ:PL    0/1:2,9:11:30.02:284,0,30
11    66258916    rs75546553    G    A    185.11    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.993;DB;DP=17;Dels=0.0;FS=8.436;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=10.89;ReadPosRankSum=0.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526515    GT:AD:DP:GQ:PL    0/1:9,8:17:99:215,0,206
11    66260134    rs112578033    G    A    804.07    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.535;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5257;MQ=49.85;MQ0=0;MQRankSum=1.23;QD=15.77;ReadPosRankSum=-3.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526515    GT:AD:DP:GQ:PL    0/1:24,27:51:99:834,0,476
11    66262606    rs2511224    T    C    677.37    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.324;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.304;QD=15.75;ReadPosRankSum=0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525738    GT:AD:DP:GQ:PL    0/1:22,21:43:99:707,0,735
11    66262806    rs10791878    T    C    1116.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525738    GT:AD:DP:GQ:PL    1/1:0,34:34:93.26:1149,93,0
11    66272142    rs1671063    A    G    648.54    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.767;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.534;QD=12.72;ReadPosRankSum=0.049;SNPEFF_AMINO_ACID_CHANGE=T226;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66272083_66272245;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347422    GT:AD:DP:GQ:PL    0/1:26,25:51:99:679,0,810
11    66278059    rs1791688    C    G    461.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347422    GT:AD:DP:GQ:PL    1/1:0,18:18:42.11:495,42,0
11    66291560    rs1791683    A    G    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BBS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    66318972    rs490998    G    A    799.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.972;DB;DP=54;Dels=0.0;FS=1.209;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=14.81;ReadPosRankSum=0.519;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ACTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502692    GT:AD:DP:GQ:PL    0/1:27,27:54:99:830,0,778
11    66319262    rs10791881    G    A    108.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ACTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502692    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:141,12,0
11    66324583    rs678397    T    C    234.88    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=-0.318;QD=13.82;ReadPosRankSum=0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ACTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511191    GT:AD:DP:GQ:PL    0/1:8,9:17:99:265,0,197
11    66324762    rs677488    C    T    190.14    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.099;QD=12.68;ReadPosRankSum=0.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=ACTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511191    GT:AD:DP:GQ:PL    0/1:8,7:15:99:220,0,264
11    66327673    rs1671064    G    A    105.43    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=15.06;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310325    GT:AD:DP:GQ:PL    0/1:3,4:7:81.06:135,0,81
11    66328095    rs1815739    T    C    447.46    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.25;MQ0=0;MQRankSum=-0.534;QD=14.43;ReadPosRankSum=0.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310325    GT:AD:DP:GQ:PL    0/1:15,16:31:99:477,0,533
11    66328719    rs618838    T    C    214.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.289;QD=17.87;ReadPosRankSum=-0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310325    GT:AD:DP:GQ:PL    0/1:4,8:12:99:244,0,123
11    66328877    rs607736    G    A    146.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=8.751;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=14.67;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310325    GT:AD:DP:GQ:PL    0/1:4,6:10:99:177,0,138
11    66329732    rs540874    A    G    1526.32    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.654;DB;DP=133;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.65;MQ0=0;MQRankSum=0.369;QD=11.48;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310325    GT:AD:DP:GQ:PL    0/1:74,58:133:99:1556,0,2239
11    66331458    rs572846    A    G    41.76    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=17;Dels=0.0;FS=2.858;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.962;QD=2.46;ReadPosRankSum=2.321;SNPEFF_AMINO_ACID_CHANGE=R467;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66330934_66331478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310325    GT:AD:DP:GQ:PL    0/1:13,4:17:71.75:72,0,411
11    66333598    rs545009    C    T    422.52    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.871;QD=12.8;ReadPosRankSum=0.29;SNPEFF_AMINO_ACID_CHANGE=R254;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66333493_66333638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310325    GT:AD:DP:GQ:PL    0/1:17,16:33:99:453,0,494
11    66335308    rs2242663    T    C    134.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=16.85;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310325    GT:AD:DP:GQ:PL    0/1:3,5:8:99:165,0,102
11    66358126    rs486584    C    T    1457.76    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.842;DB;DP=116;Dels=0.0;FS=1.613;HRun=0;HaplotypeScore=4.1449;MQ=59.2;MQ0=0;MQRankSum=-0.259;QD=12.57;ReadPosRankSum=1.283;SNPEFF_AMINO_ACID_CHANGE=L787;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66357640_66360554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333861    GT:AD:DP:GQ:PL    0/1:65,51:116:99:1488,0,1974
11    66367852    .    T    TTGAA    580.42    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DP=11;FS=0.0;HRun=0;HaplotypeScore=42.7945;IndelType=I;MQ=58.88;MQ0=0;MQRankSum=-1.044;QD=52.77;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526058    GT:AD:DP:GQ:PL    0/1:3,7:11:18.21:619,0,18
11    66395985    rs10667137    C    CTAA    1012.42    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.269;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=105.9122;IndelType=I;MQ=58.65;MQ0=0;MQRankSum=-0.544;QD=30.68;ReadPosRankSum=-0.251;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310137    GT:AD:DP:GQ:PL    0/1:16,16:33:99:1051,0,542
11    66456387    rs2276138    T    C    224.23    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.209;QD=14.95;ReadPosRankSum=0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309996    GT:AD:DP:GQ:PL    0/1:7,8:15:99:254,0,227
11    66457668    rs141493701    G    A    375.99    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.432;DB;DP=28;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.8321;MQ=59.17;MQ0=0;MQRankSum=0.218;QD=13.43;ReadPosRankSum=-0.461;SNPEFF_AMINO_ACID_CHANGE=A1884;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66457510_66457754;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309996    GT:AD:DP:GQ:PL    0/1:15,13:28:99:406,0,424
11    66458696    rs12804382    C    T    942.74    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=58.64;MQ0=0;MQRankSum=0.557;QD=19.64;ReadPosRankSum=-0.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530665    GT:AD:DP:GQ:PL    0/1:18,30:48:99:973,0,460
11    66469032    rs532439    T    C    773    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=54;Dels=0.0;FS=3.004;HRun=2;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=14.31;ReadPosRankSum=-1.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309996    GT:AD:DP:GQ:PL    0/1:27,27:54:99:803,0,966
11    66472274    rs4930388    T    C    646.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=S825G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66472069_66472939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309996    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:679,51,0
11    66481264    rs615536    C    T    1738.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7853;MQ=59.51;MQ0=0;MQRankSum=-1.659;QD=36.99;ReadPosRankSum=1.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527010    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1772,108,0
11    66483265    rs12805133    A    G    207.93    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=19;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=10.94;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309996    GT:AD:DP:GQ:PL    0/1:11,8:19:99:238,0,391
11    66583759    rs7930203    A    G    461.71    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=1.731;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9955;MQ=60.0;MQ0=0;MQRankSum=-1.802;QD=10.26;ReadPosRankSum=0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346672    GT:AD:DP:GQ:PL    0/1:26,19:45:99:492,0,886
11    66583779    rs543191    T    G    341.07    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.038;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.411;QD=13.12;ReadPosRankSum=1.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346672    GT:AD:DP:GQ:PL    0/1:14,12:26:99:371,0,486
11    66610645    rs7570    G    C    167.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=24;Dels=0.0;FS=3.796;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.252;QD=6.96;ReadPosRankSum=0.775;SNPEFF_AMINO_ACID_CHANGE=V441;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66610640_66610761;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527634    GT:AD:DP:GQ:PL    0/1:15,9:24:99:197,0,420
11    66617790    rs2229745    G    A    410.79    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=39;Dels=0.0;FS=7.321;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.736;QD=10.53;ReadPosRankSum=-0.13;SNPEFF_AMINO_ACID_CHANGE=N873;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66617691_66617935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393955    GT:AD:DP:GQ:PL    0/1:24,15:39:99:441,0,711
11    66626585    .    C    G    543.01    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.969;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=58.78;MQ0=0;MQRankSum=1.116;QD=14.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRFN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531590    GT:AD:DP:GQ:PL    0/1:17,21:38:99:573,0,496
11    66812338    rs11227668    A    G    196.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525149    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
11    66837965    rs4930409    T    C    2640.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7998;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_AMINO_ACID_CHANGE=C134R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66837896_66838030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308831    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2673,208,0
11    66995603    rs3741189    T    C    5760.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4679;MQ=59.45;MQ0=0;QD=36.23;SNPEFF_AMINO_ACID_CHANGE=T351;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_66995508_66995634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398645    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5761,424,0
11    67017445    rs34463980    C    CA    1584.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=2;HaplotypeScore=71.9031;IndelType=I;MQ=59.96;MQ0=0;QD=46.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525041    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1627,102,0
11    67034266    rs11227756    C    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.06;SNPEFF_AMINO_ACID_CHANGE=I32;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67033881_67034283;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRBK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308595    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    67048131    .    T    G    60.15    QDFilter2    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.67;DP=35;Dels=0.0;FS=3.09;HRun=4;HaplotypeScore=4.9641;MQ=52.42;MQ0=0;MQRankSum=1.022;QD=1.72;ReadPosRankSum=3.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530291    GT:AD:DP:GQ:PL    0/1:10,24:35:90.14:90,0,244
11    67050292    rs2071007    G    A    431.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=28.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530291    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:465,36,0
11    67052466    rs10896164    G    A    797.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8325;MQ=52.03;MQ0=0;QD=23.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526572    GT:AD:DP:GQ:PL    1/1:1,29:34:66.18:831,66,0
11    67068859    rs2298815    T    C    605.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=24.23;SNPEFF_AMINO_ACID_CHANGE=V359;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67068753_67068869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD13D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308440    GT:AD:DP:GQ:PL    1/1:0,25:25:51.14:639,51,0
11    67071584    rs4244822    C    G    202.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308440    GT:AD:DP:GQ:PL    1/1:0,9:9:24.01:235,24,0
11    67076810    rs3737460    T    G    794.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532600    GT:AD:DP:GQ:PL    1/1:0,26:26:63.19:828,63,0
11    67078923    rs75351410    C    G    313.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=20.88;ReadPosRankSum=0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527821    GT:AD:DP:GQ:PL    0/1:5,10:15:99:343,0,154
11    67134761    rs149088194    G    C    259.05    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.979;QD=15.24;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312438    GT:AD:DP:GQ:PL    0/1:5,12:17:99:289,0,121
11    67163338    .    T    G    131.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.686;DP=57;Dels=0.0;FS=35.569;HRun=3;HaplotypeScore=6.3732;MQ=53.61;MQ0=0;MQRankSum=-0.352;QD=2.31;ReadPosRankSum=1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1CA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312989    GT:AD:DP:GQ:PL    0/1:19,38:57:99:162,0,584
11    67177278    rs7122299    G    A    512.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D10C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529132    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:545,39,0
11    67196237    rs1476792    T    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CARNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307823    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    67196544    rs917570    C    G    493.30    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.948;DB;DP=40;Dels=0.0;FS=11.299;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.46;QD=12.33;ReadPosRankSum=-0.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CARNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307823    GT:AD:DP:GQ:PL    0/1:21,19:40:99:523,0,623
11    67200819    rs4930427    C    T    1699.36    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.181;DB;DP=113;Dels=0.0;FS=2.487;HRun=2;HaplotypeScore=0.7887;MQ=59.55;MQ0=0;MQRankSum=1.45;QD=15.04;ReadPosRankSum=0.236;SNPEFF_AMINO_ACID_CHANGE=F269;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67200811_67200918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312629    GT:AD:DP:GQ:PL    0/1:53,60:113:99:1729,0,1427
11    67201008    rs1790753    C    T    230.94    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=57.66;MQ0=0;MQRankSum=-1.102;QD=11.55;ReadPosRankSum=-0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341356    GT:AD:DP:GQ:PL    0/1:11,9:20:99:261,0,348
11    67202044    rs1790752    G    A    42.13    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.437;QD=3.24;ReadPosRankSum=0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341356    GT:AD:DP:GQ:PL    0/1:10,3:13:72.12:72,0,305
11    67202156    rs13859    C    T    110.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=11.09;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=A420V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67202053_67202165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS6KB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312629    GT:AD:DP:GQ:PL    0/1:4,6:10:99:141,0,142
11    67205978    rs872375    G    A    239.33    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.88;QD=11.4;ReadPosRankSum=0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393886    GT:AD:DP:GQ:PL    0/1:11,10:21:99:269,0,314
11    67207426    rs2302264    G    A    129.46    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=11.77;ReadPosRankSum=-1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393886    GT:AD:DP:GQ:PL    0/1:6,5:11:99:159,0,126
11    67223920    rs1638564    C    G    65.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.154;DB;DP=20;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=1.7219;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=3.26;ReadPosRankSum=-1.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CABP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538060    GT:AD:DP:GQ:PL    0/1:10,10:20:95.11:95,0,315
11    67223921    rs1638565    A    C    32.61    QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.388;DB;DP=20;Dels=0.0;FS=2.304;HRun=1;HaplotypeScore=1.7219;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=1.63;ReadPosRankSum=-1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CABP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538060    GT:AD:DP:GQ:PL    0/1:10,10:20:62.60:63,0,329
11    67226097    rs72934713    C    T    516.63    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=57;Dels=0.0;FS=2.735;HRun=0;HaplotypeScore=1.5592;MQ=58.36;MQ0=0;MQRankSum=-0.064;QD=9.06;ReadPosRankSum=1.258;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CABP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538060    GT:AD:DP:GQ:PL    0/1:34,22:57:99:547,0,743
11    67257037    rs4084113    C    T    72.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=10.29;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=S193;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67256738_67257149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529797    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,117
11    67257823    rs641081    C    A    850.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5777;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=Q165K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67257787_67257929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528641    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:883,66,0
11    67258391    rs4930199    A    G    573.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=Q307R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67258259_67258574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279146    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:606,45,0
11    67260746    rs7104627    G    A    83.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279146    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:116,9,0
11    67262282    .    C    CGA    336.91    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=2.949;DP=25;FS=0.0;HRun=0;HaplotypeScore=269.9986;IndelType=I;MQ=41.52;MQ0=0;MQRankSum=-2.31;QD=13.48;ReadPosRankSum=3.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279146    GT:AD:DP:GQ:PL    0/1:19,6:25:99:376,0,241
11    67262286    rs12789119    T    A    131.70    HaplotypeScoreFilter13    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.743;DB;DP=24;Dels=0.04;FS=0.0;HRun=0;HaplotypeScore=21.7638;MQ=41.52;MQ0=0;MQRankSum=1.371;QD=5.27;ReadPosRankSum=-1.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279146    GT:AD:DP:GQ:PL    0/1:15,9:24:99:162,0,229
11    67262289    rs7932071    G    A    283.75    HaplotypeScoreFilter13    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=20.7973;MQ=41.52;MQ0=0;MQRankSum=2.541;QD=11.35;ReadPosRankSum=-2.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279146    GT:AD:DP:GQ:PL    0/1:9,16:25:88.85:314,0,89
11    67263767    rs618633    A    G    508.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=24.21;SNPEFF_AMINO_ACID_CHANGE=A732;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67263649_67263816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436757    GT:AD:DP:GQ:PL    1/1:0,21:21:45.10:541,45,0
11    67264679    rs2276120    C    T    111.29    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=18;Dels=0.0;FS=2.933;HRun=0;HaplotypeScore=1.9987;MQ=58.71;MQ0=0;MQRankSum=0.58;QD=6.18;ReadPosRankSum=-1.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525521    GT:AD:DP:GQ:PL    0/1:13,5:18:99:141,0,356
11    67268048    rs11604662    G    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524901    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:70,0,32
11    67288594    rs2276118    C    T    127.49    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=13;Dels=0.0;FS=6.64;HRun=0;HaplotypeScore=1.8665;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=9.81;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=R37Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67288496_67288630;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353903    GT:AD:DP:GQ:PL    0/1:8,5:13:99:157,0,256
11    67351531    rs1079719    G    A    79.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=19.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398603    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:111,9,0
11    67351540    rs1871041    A    G    145.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398603    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
11    67352256    rs762803    C    A    693.64    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.84;DB;DP=70;Dels=0.0;FS=6.669;HRun=2;HaplotypeScore=2.2967;MQ=59.07;MQ0=0;MQRankSum=1.137;QD=9.91;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398603    GT:AD:DP:GQ:PL    0/1:40,29:70:99:724,0,1109
11    67375696    rs11431804    C    CA    298.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DB;DP=14;FS=0.0;HRun=13;HaplotypeScore=62.5321;IndelType=I;MQ=57.76;MQ0=0;MQRankSum=0.992;QD=21.35;ReadPosRankSum=0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322776    GT:AD:DP:GQ:PL    1/1:2,12:14:21.76:341,22,0
11    67376887    rs72932599    G    C    427.74    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.145;DB;DP=35;Dels=0.0;FS=3.703;HRun=0;HaplotypeScore=0.9967;MQ=59.34;MQ0=0;MQRankSum=-1.318;QD=12.22;ReadPosRankSum=0.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524876    GT:AD:DP:GQ:PL    0/1:20,15:35:99:458,0,594
11    67378229    rs3016861    T    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524838    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    67399735    rs2514021    T    C    1767.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335385    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1800,141,0
11    67399970    rs3765088    C    T    1545.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.904;DB;DP=47;Dels=0.0;FS=3.745;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-1.732;QD=32.89;ReadPosRankSum=0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335385    GT:AD:DP:GQ:PL    1/1:1,46:47:84.16:1579,84,0
11    67400156    rs146440732    G    C    639.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.187;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.92;MQ0=0;MQRankSum=-0.326;QD=14.86;ReadPosRankSum=0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335385    GT:AD:DP:GQ:PL    0/1:21,21:43:99:669,0,652
11    67402113    rs2514022    C    T    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335385    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
11    67413006    rs2290958    T    C    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255082    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    67413064    rs77248329    G    A    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255082    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,70
11    67414492    rs948445    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_AMINO_ACID_CHANGE=R8Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67414279_67414534;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACY3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255082    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    67414591    rs2509715    G    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255082    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    67430482    rs866907    T    C    90.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525827    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
11    67430589    rs78402723    A    G    806.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525827    GT:AD:DP:GQ:PL    1/1:0,25:25:69.18:839,69,0
11    67430762    rs1551886    T    C    600.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=H361R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67429634_67430870;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349015    GT:AD:DP:GQ:PL    1/1:0,20:20:54.14:633,54,0
11    67431038    rs1979375    G    A    280.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525827    GT:AD:DP:GQ:PL    1/1:0,9:9:27.04:314,27,0
11    67431110    rs1979376    G    A    806.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525827    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:839,63,0
11    67432479    rs4930465    G    A    69.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=17.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525827    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:102,9,0
11    67432804    rs2447571    T    C    2999.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=55.37;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=S220G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67432756_67433142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349015    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3032,232,0
11    67432854    rs6591270    T    C    3284.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7273;MQ=47.56;MQ0=0;QD=31.59;SNPEFF_AMINO_ACID_CHANGE=H203R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67432756_67433142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349015    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3285,265,0
11    67433421    rs4244825    G    A    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528756    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:168,12,0
11    67433708    rs5792424    C    CG    838.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=4;HaplotypeScore=122.8937;IndelType=I;MQ=59.06;MQ0=0;QD=32.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531881    GT:AD:DP:GQ:PL    1/1:3,22:26:66.20:881,66,0
11    67433758    rs1551887    G    A    536.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531881    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:570,42,0
11    67433869    rs1551888    C    T    251.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.41;SNPEFF_AMINO_ACID_CHANGE=S52N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67433787_67433872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349015    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:284,24,0
11    67434010    rs1871032    C    T    725.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531881    GT:AD:DP:GQ:PL    1/1:0,22:23:60.19:758,60,0
11    67434416    rs4646823    C    A    1239.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_67434377_67434487;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349015    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1273,93,0
11    67479308    rs4076045    A    C    98.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.99;MQ0=1;QD=19.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=UNC93B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530315    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:131,12,0
11    67481161    rs11227892    C    G    500    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.97;MQ0=0;QD=27.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=UNC93B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530315    GT:AD:DP:GQ:PL    1/1:0,18:18:42.12:533,42,0
11    67481305    rs11227893    C    T    678.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.03;MQ0=19;QD=11.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=UNC93B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530315    GT:AD:DP:GQ:PL    1/1:9,50:59:60.10:711,60,0
11    67481388    rs11530816    C    T    597.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=16.43;MQ0=40;QD=8.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=UNC93B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530315    GT:AD:DP:GQ:PL    1/1:19,53:72:57.14:630,57,0
11    67483271    rs6591281    A    C    438.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.41;MQ0=0;QD=27.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=UNC93B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530315    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:472,36,0
11    67483324    rs6591282    G    C    332.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.46;MQ0=0;QD=25.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=UNC93B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530315    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:366,33,0
11    67483350    rs6591283    T    C    260.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=34.73;MQ0=0;QD=28.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=UNC93B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530315    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:294,27,0
11    67483428    rs6591284    C    T    79.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.75;MQ0=0;QD=15.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=UNC93B5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530315    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:111,9,0
11    67490825    rs4930220    A    G    1908.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9203;MQ=42.24;MQ0=1;QD=28.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-655M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524910    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1941,162,0
11    67491007    rs34275218    A    AC    128.77    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=45.8813;IndelType=I;MQ=50.48;MQ0=0;MQRankSum=-3.287;QD=6.44;ReadPosRankSum=0.324;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-655M14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524910    GT:AD:DP:GQ:PL    0/1:14,6:19:99:168,0,481
11    67503607    rs7126386    T    G    2114.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=48.94;MQ0=2;QD=33.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-655M14.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532901    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2148,168,0
11    67557405    rs9665977    C    T    141.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=17.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528089    GT:AD:DP:GQ:PL    1/1:0,8:8:15.03:175,15,0
11    67557756    rs9666558    T    C    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.22;MQ0=2;QD=14.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528089    GT:AD:DP:GQ:PL    1/1:0,9:9:15.04:167,15,0
11    67558525    rs9704599    T    C    285.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.96;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528089    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:318,24,0
11    67558729    rs9326383    G    C    841.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.24;MQ0=0;QD=30.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528089    GT:AD:DP:GQ:PL    1/1:0,28:28:69.17:875,69,0
11    67559726    rs1047704    T    C    927.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.48;MQ0=1;QD=28.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,33:33:81.19:961,81,0
11    67559770    rs11227960    C    A    1198.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.75;MQ0=1;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1231,93,0
11    67560447    rs4347402    C    T    41.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.47;MQ0=1;QD=8.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:1,4:5:6.02:72,6,0
11    67560468    rs4347403    C    T    130.35    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.62;MQ0=1;QD=18.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:1,6:7:12.04:163,12,0
11    67560506    rs1047554    T    C    223.08    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.496;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=26.66;MQ0=4;MQRankSum=0.248;QD=12.39;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:3,15:18:2.35:253,2,0
11    67560618    rs4244831    T    G    1421.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.1;MQ0=13;QD=19.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,72:72:99:1455,138,0
11    67563991    rs11227965    A    G    93.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.95;MQ0=2;QD=15.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:126,12,0
11    67564004    rs10896234    A    C    98.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.95;MQ0=2;QD=16.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:131,12,0
11    67564005    rs11227966    T    C    87.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.95;MQ0=2;QD=14.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:120,12,0
11    67564034    rs79787139    A    G    102.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.16;MQ0=4;QD=8.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,12:12:14.99:135,15,0
11    67564056    rs74682508    T    A    415.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.2;MQ0=6;QD=18.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,22:22:39.06:448,39,0
11    67564068    rs77439896    C    A    399.57    MQFilter40    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=35.68;MQ0=6;MQRankSum=1.833;QD=14.27;ReadPosRankSum=-0.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    0/1:11,17:28:99:430,0,161
11    67564104    rs10896235    C    T    360.34    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.675;DB;DP=49;Dels=0.0;FS=2.0;HRun=0;HaplotypeScore=0.0;MQ=41.58;MQ0=4;MQRankSum=0.072;QD=7.35;ReadPosRankSum=-0.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    0/1:29,20:49:99:390,0,761
11    67564135    rs77521350    G    C    2011.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=44.27;MQ0=2;QD=24.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2045,174,0
11    67564162    rs75324740    A    G    1105.93    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.41;DB;DP=97;Dels=0.0;FS=1.87;HRun=1;HaplotypeScore=0.0;MQ=42.88;MQ0=6;MQRankSum=-1.402;QD=11.4;ReadPosRankSum=-0.719;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-119D9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510394    GT:AD:DP:GQ:PL    0/1:47,50:97:99:1136,0,1203
11    67564197    rs72657419    T    C    3596.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.2;MQ0=8;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-119D9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510394    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3596,289,0
11    67564238    rs77785393    C    T    1623.78    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=120;Dels=0.0;FS=11.542;HRun=0;HaplotypeScore=0.6651;MQ=42.8;MQ0=7;MQRankSum=0.546;QD=13.53;ReadPosRankSum=-0.594;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-119D9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510394    GT:AD:DP:GQ:PL    0/1:53,67:120:99:1654,0,1012
11    67564241    rs80309804    C    T    1598.57    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.494;DB;DP=120;Dels=0.0;FS=13.393;HRun=0;HaplotypeScore=0.0;MQ=42.43;MQ0=7;MQRankSum=1.051;QD=13.32;ReadPosRankSum=-0.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-119D9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510394    GT:AD:DP:GQ:PL    0/1:53,67:120:99:1629,0,1052
11    67564270    .    CA    C    2209.03    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=5.602;DP=101;FS=18.972;HRun=1;HaplotypeScore=876.4303;IndelType=D;MQ=42.57;MQ0=4;MQRankSum=2.701;QD=20.08;ReadPosRankSum=-0.561;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-119D9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510394    GT:AD:DP:GQ:PL    0/1:43,67:101:99:2248,0,1468
11    67564293    rs117919932    T    A    570.58    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=98;Dels=0.0;FS=13.671;HRun=1;HaplotypeScore=0.0;MQ=41.62;MQ0=5;MQRankSum=-3.723;QD=5.82;ReadPosRankSum=-0.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-119D9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510394    GT:AD:DP:GQ:PL    0/1:65,33:98:99:601,0,1589
11    67564345    rs4244833    C    T    1524.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=37.01;MQ0=8;QD=25.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-119D9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510394    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1558,132,0
11    67564396    rs4244834    G    A    334.94    MQFilter40    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=0.313;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.93;MQ0=5;MQRankSum=1.175;QD=12.41;ReadPosRankSum=-0.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-119D9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510394    GT:AD:DP:GQ:PL    0/1:7,20:27:18.80:365,0,19
11    67566721    rs9703967    T    C    243.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.05;MQ0=2;QD=16.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,15:15:27.04:277,27,0
11    67570410    rs7394553    T    G    989.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.92;MQ0=9;QD=17.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:5,53:58:96.15:1022,96,0
11    67570639    rs7396104    C    T    546.46    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.399;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5216;MQ=54.66;MQ0=0;MQRankSum=-0.293;QD=15.61;ReadPosRankSum=0.466;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    0/1:17,18:35:99:576,0,447
11    67572698    rs7129283    G    T    127.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM86C2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525180    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
11    67700552    rs144881798    T    C    2172.04    MQFilter40    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9394;MQ=36.46;MQ0=3;MQRankSum=0.053;QD=13.41;ReadPosRankSum=-1.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP5-903G2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527543    GT:AD:DP:GQ:PL    0/1:80,82:162:99:2202,0,2272
11    67700897    rs308325    G    A    99.58    QDFilter2    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=181;DS;Dels=0.0;FS=20.058;HRun=0;HaplotypeScore=3.7331;MQ=45.51;MQ0=24;MQRankSum=-2.983;QD=0.55;ReadPosRankSum=-0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC004924.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408626    GT:AD:DP:GQ:PL    0/1:139,42:181:99:130,0,4473
11    67700907    rs308324    T    G    311.24    QDFilter2    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.407;DB;DP=170;DS;Dels=0.0;FS=26.694;HRun=0;HaplotypeScore=2.6819;MQ=46.16;MQ0=19;MQRankSum=-1.344;QD=1.83;ReadPosRankSum=-3.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC004924.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408626    GT:AD:DP:GQ:PL    0/1:126,44:170:99:341,0,4302
11    67700975    .    A    ACCG    805.09    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.57;DP=54;FS=6.492;HRun=0;HaplotypeScore=331.8555;IndelType=I;MQ=49.74;MQ0=0;MQRankSum=-0.165;QD=14.91;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC004924.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408626    GT:AD:DP:GQ:PL    0/1:30,24:54:99:844,0,773
11    67741749    rs308331    G    C    1668.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7E1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533891    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1702,126,0
11    67741878    rs112372074    A    G    1445.81    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.099;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9996;MQ=58.43;MQ0=0;MQRankSum=-0.516;QD=13.03;ReadPosRankSum=-0.492;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7E1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533891    GT:AD:DP:GQ:PL    0/1:56,55:111:99:1476,0,1607
11    67742059    rs149328520    T    C    1388.83    MQFilter40    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=1.193;DB;DP=128;Dels=0.0;FS=0.698;HRun=0;HaplotypeScore=1.9891;MQ=38.1;MQ0=2;MQRankSum=0.915;QD=10.85;ReadPosRankSum=-0.899;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7E1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533891    GT:AD:DP:GQ:PL    0/1:69,59:128:99:1419,0,1790
11    67742236    rs74829067    C    A    650.47    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=6.894;DB;DP=223;Dels=0.0;FS=11.98;HRun=4;HaplotypeScore=3.7924;MQ=52.35;MQ0=0;MQRankSum=-8.607;QD=2.92;ReadPosRankSum=1.851;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7E1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533891    GT:AD:DP:GQ:PL    0/1:177,46:223:99:680,0,5464
11    67742248    rs113939224    G    A    601.44    PASS    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=3.071;DB;DP=233;Dels=0.01;FS=8.573;HRun=1;HaplotypeScore=5.7649;MQ=49.52;MQ0=0;MQRankSum=-6.664;QD=2.56;ReadPosRankSum=1.636;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7E1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533891    GT:AD:DP:GQ:PL    0/1:186,46:233:99:631,0,5644
11    67765056    rs308328    T    C    86.05    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.197;QD=4.53;ReadPosRankSum=0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC93B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524455    GT:AD:DP:GQ:PL    0/1:13,6:19:99:116,0,427
11    67765163    rs5792426    A    AG    1567.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=1;HaplotypeScore=99.1473;IndelType=I;MQ=60.87;MQ0=0;QD=42.37;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC93B1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000227471    GT:AD:DP:GQ:PL    1/1:0,36:37:99:1610,108,0
11    67786398    rs4244839    T    C    199.64    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=4.26;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=22.18;ReadPosRankSum=0.751;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=ALDH3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007633    GT:AD:DP:GQ:PL    0/1:1,8:9:17.16:230,0,17
11    67786764    rs1636207    A    G    59.77    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=4.26;HRun=2;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=7.47;ReadPosRankSum=0.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=ALDH3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007633    GT:AD:DP:GQ:PL    0/1:5,3:8:89.76:90,0,169
11    67789138    rs2286168    C    T    1425.20    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.136;DB;DP=97;Dels=0.0;FS=0.79;HRun=0;HaplotypeScore=0.8321;MQ=57.59;MQ0=1;MQRankSum=1.405;QD=14.69;ReadPosRankSum=-0.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=ALDH3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525518    GT:AD:DP:GQ:PL    0/1:43,53:97:99:1455,0,1168
11    67789293    rs78732492    G    GC    2671.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=1;HaplotypeScore=132.2898;IndelType=I;MQ=50.27;MQ0=0;QD=42.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=ALDH3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525518    GT:AD:DP:GQ:PL    1/1:0,63:61:99:2714,184,0
11    67790006    rs4930226    A    AC    649.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=5;HaplotypeScore=39.5505;IndelType=I;MQ=62.5;MQ0=0;QD=38.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=ALDH3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525518    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:692,51,0
11    67790278    rs3764817    C    T    280.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.692;DB;DP=25;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.193;QD=11.21;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=ALDH3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525518    GT:AD:DP:GQ:PL    0/1:15,10:25:99:310,0,413
11    67790340    rs3764816    A    T    93.35    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=8.49;ReadPosRankSum=2.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=ALDH3B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525518    GT:AD:DP:GQ:PL    0/1:7,4:11:99:123,0,233
11    67793448    rs2286164    A    G    367.63    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.271;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=12.68;ReadPosRankSum=-0.599;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313468    GT:AD:DP:GQ:PL    0/1:16,13:29:99:398,0,454
11    67793509    rs2286163    C    T    554.53    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.009;DB;DP=51;Dels=0.0;FS=11.183;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.502;QD=10.87;ReadPosRankSum=0.331;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313468    GT:AD:DP:GQ:PL    0/1:28,23:51:99:585,0,812
11    67795378    rs11436139    G    GC    260.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=38.6136;IndelType=I;MQ=49.17;MQ0=0;QD=37.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313468    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:303,21,0
11    67799731    rs3133266    C    G    2176.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5115;MQ=58.95;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313468    GT:AD:DP:GQ:PL    1/1:0,65:66:99:2210,169,0
11    67799926    rs2075626    T    C    105.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313468    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:135,0,67
11    67800494    rs3115545    T    G    957.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.48;MQ0=0;QD=34.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531796    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:991,75,0
11    67804074    rs1051806    C    T    185.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=15.46;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432321    GT:AD:DP:GQ:PL    0/1:6,6:12:99:215,0,120
11    67804156    rs3133269    C    T    170.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313468    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
11    67808938    rs7116924    T    C    55.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.9578;MQ=51.77;MQ0=0;MQRankSum=0.358;QD=9.2;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NDUFS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313468    GT:AD:DP:GQ:PL    0/1:2,4:6:67.61:85,0,68
11    67811963    rs72926459    G    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCIRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524598    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    67814979    rs2471829    G    C    659.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_AMINO_ACID_CHANGE=L199;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67814900_67815039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCIRG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000532635    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:692,54,0
11    67816798    .    C    T    147.54    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=58.78;MQ0=0;MQRankSum=-0.311;QD=7.77;ReadPosRankSum=-1.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265689    GT:AD:DP:GQ:PL    0/1:11,8:19:99:178,0,325
11    67816936    rs2075609    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265689    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    67817876    rs11228127    C    T    298.58    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.925;DB;DP=29;Dels=0.0;FS=3.9;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.592;QD=10.3;ReadPosRankSum=-0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265689    GT:AD:DP:GQ:PL    0/1:16,13:29:99:329,0,579
11    67837771    rs3819255    A    T    684.36    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.097;DB;DP=63;Dels=0.0;FS=1.501;HRun=4;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.007;QD=10.86;ReadPosRankSum=-1.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530730    GT:AD:DP:GQ:PL    0/1:31,32:63:99:714,0,1022
11    67842369    rs2512611    C    T    109.96    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=15.71;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265689    GT:AD:DP:GQ:PL    0/1:2,5:7:44.65:140,0,45
11    67938302    rs7945995    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUV420H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453170    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
11    67938848    rs7949511    A    C    103.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=10.35;ReadPosRankSum=0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUV420H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453170    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,179
11    67941390    rs3832715    G    GA    460.39    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.816;DB;DP=47;FS=1.721;HRun=9;HaplotypeScore=117.2102;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=9.8;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUV420H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458496    GT:AD:DP:GQ:PL    0/1:29,18:47:99:499,0,470
11    67953129    rs11228152    A    G    148.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=18.62;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUV420H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466295    GT:AD:DP:GQ:PL    0/1:2,6:8:59.46:179,0,59
11    67957518    rs2512606    A    T    4160.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=I9N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_67957384_67957619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUV420H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304363    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4160,304,0
11    68029738    rs143548724    G    A    303.61    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.705;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=9.79;ReadPosRankSum=-0.509;SNPEFF_AMINO_ACID_CHANGE=A242V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68028803_68030386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304271    GT:AD:DP:GQ:PL    0/1:18,13:31:99:334,0,479
11    68030173    rs3802746    C    A    822.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=G97V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68028803_68030386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304271    GT:AD:DP:GQ:PL    1/1:0,23:24:66.20:856,66,0
11    68115764    rs643981    C    T    285.51    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=12.98;ReadPosRankSum=-1.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:12,10:22:99:316,0,404
11    68131167    rs10791978    A    T    256.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:289,24,0
11    68132743    rs72519659    A    AG    171.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=13.1859;IndelType=I;MQ=62.13;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:213,15,0
11    68132854    rs74554453    C    CG    572.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=3;HaplotypeScore=100.8907;IndelType=I;MQ=59.92;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:1,16:17:45.15:615,45,0
11    68132886    rs7483989    A    C    891.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.93;MQ0=0;QD=38.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:924,69,0
11    68133035    rs314776    T    C    1254.53    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.383;DB;DP=102;Dels=0.0;FS=1.632;HRun=1;HaplotypeScore=2.5583;MQ=59.14;MQ0=0;MQRankSum=0.231;QD=12.3;ReadPosRankSum=0.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:54,48:102:99:1285,0,1462
11    68153710    rs17848255    C    T    175.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=11.69;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:9,6:15:99:205,0,257
11    68157299    rs4988320    G    A    411.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.018;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.777;QD=12.46;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:18,15:33:99:441,0,506
11    68170825    rs687482    A    G    36.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
11    68170833    rs686921    G    T    155.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:188,15,0
11    68171013    rs545382    T    C    1570.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=F549;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68170951_68171167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1604,129,0
11    68173861    rs471966    C    T    106.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=17.7;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:2,4:6:67.23:136,0,67
11    68174122    rs2277268    G    A    879.54    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=0.013;DB;DP=47;Dels=0.0;FS=1.238;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.214;QD=18.71;ReadPosRankSum=-0.315;SNPEFF_AMINO_ACID_CHANGE=E644;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68173992_68174281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:16,30:47:99:910,0,412
11    68177614    rs4988322    T    C    138.21    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.66;QD=10.63;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528890    GT:AD:DP:GQ:PL    0/1:6,7:13:99:168,0,209
11    68177708    rs576118    G    A    82.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=27.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528890    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
11    68177728    rs667126    C    T    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528890    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
11    68179125    rs2242339    C    T    55.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=4.6;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:6,6:12:85.21:85,0,151
11    68179166    rs689179    A    G    162.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:195,15,0
11    68192690    rs556442    G    A    123.55    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.793;QD=7.72;ReadPosRankSum=0.113;SNPEFF_AMINO_ACID_CHANGE=V1119;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68192570_68192760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:11,5:16:99:154,0,292
11    68196830    rs608343    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    68196961    rs607887    C    T    403.64    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.886;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.009;QD=21.24;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:6,13:19:99:434,0,152
11    68200945    rs12416761    G    A    267.78    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.312;DB;DP=27;Dels=0.0;FS=2.84;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=-1.33;QD=9.92;ReadPosRankSum=0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:17,9:27:99:298,0,439
11    68201007    rs12417014    C    T    500.16    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.757;DB;DP=40;Dels=0.0;FS=10.316;HRun=0;HaplotypeScore=0.9998;MQ=59.42;MQ0=0;MQRankSum=0.328;QD=12.5;ReadPosRankSum=0.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:23,16:40:99:530,0,679
11    68206173    rs901824    T    C    252.04    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.0;QD=18.0;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:3,11:14:56.44:282,0,56
11    68206197    rs901825    G    C    198.34    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.296;QD=18.03;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294304    GT:AD:DP:GQ:PL    0/1:3,8:11:62.45:228,0,62
11    68273626    rs66752716    C    T    1509.50    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.469;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5767;MQ=59.44;MQ0=0;MQRankSum=-0.694;QD=18.41;ReadPosRankSum=1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265636    GT:AD:DP:GQ:PL    0/1:34,48:82:99:1539,0,1106
11    68312645    rs10896340    A    G    42.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.73;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265636    GT:AD:DP:GQ:PL    0/1:2,2:4:15.67:73,0,16
11    68315798    rs10736668    C    A    608.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=58.55;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265636    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:642,48,0
11    68326236    rs12271290    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=23.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529907    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:125,9,0
11    68331663    rs12804775    G    A    437.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.215;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=16.82;ReadPosRankSum=0.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265636    GT:AD:DP:GQ:PL    0/1:13,13:26:99:467,0,357
11    68331715    rs10501398    C    G    966.20    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=1.402;DB;DP=57;Dels=0.0;FS=1.218;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.473;QD=16.95;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265636    GT:AD:DP:GQ:PL    0/1:26,31:57:99:996,0,872
11    68341722    rs3740631    T    G    1828.66    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=120;Dels=0.0;FS=3.642;HRun=0;HaplotypeScore=2.8913;MQ=59.81;MQ0=0;MQRankSum=-0.024;QD=15.24;ReadPosRankSum=0.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526574    GT:AD:DP:GQ:PL    0/1:55,65:120:99:1859,0,1643
11    68341873    rs3824850    A    G    218.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=16.79;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526574    GT:AD:DP:GQ:PL    0/1:6,7:13:99:248,0,209
11    68343593    rs3740629    C    T    440.18    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.396;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=17.61;ReadPosRankSum=-1.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526574    GT:AD:DP:GQ:PL    0/1:11,14:25:99:470,0,374
11    68358106    rs5792446    CTTTTA    C    502.63    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=16;FS=6.021;HRun=0;HaplotypeScore=88.6902;IndelType=D;MQ=56.97;MQ0=0;MQRankSum=0.705;QD=31.41;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265636    GT:AD:DP:GQ:PL    0/1:6,10:16:99:542,0,510
11    68377602    rs7104877    A    C    67.01    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.38;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265636    GT:AD:DP:GQ:PL    0/1:3,5:8:97:97,0,107
11    68456410    rs3136540    T    C    657.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538401    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:690,51,0
11    68458470    rs1042577    T    C    331.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=20;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.887;QD=16.58;ReadPosRankSum=0.887;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265643    GT:AD:DP:GQ:PL    0/1:8,12:20:99:362,0,264
11    68476011    rs4930597    A    G    413.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255087    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:446,33,0
11    68478207    rs10750832    A    G    90.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255087    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
11    68512543    rs12365708    A    G    622.59    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.93;DB;DP=51;Dels=0.0;FS=1.101;HRun=0;HaplotypeScore=0.9665;MQ=59.55;MQ0=0;MQRankSum=0.07;QD=12.21;ReadPosRankSum=-0.21;SNPEFF_AMINO_ACID_CHANGE=C223R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68512459_68512579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255087    GT:AD:DP:GQ:PL    0/1:26,25:51:99:653,0,859
11    68514998    rs10791995    A    G    126.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255087    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
11    68522216    rs75022915    T    C    494.52    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.619;QD=19.02;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    0/1:7,19:26:99:525,0,192
11    68529358    rs3019597    C    T    39.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537756    GT:AD:DP:GQ:PL    0/1:2,2:4:54.77:69,0,55
11    68530257    rs2924699    C    T    159.79    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=20;Dels=0.0;FS=4.738;HRun=0;HaplotypeScore=1.849;MQ=58.89;MQ0=0;MQRankSum=-0.949;QD=7.61;ReadPosRankSum=2.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    0/1:14,6:20:99:190,0,466
11    68530318    rs7112615    C    A    226.92    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.278;QD=17.46;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    0/1:4,9:13:99:257,0,115
11    68548260    rs3019576    C    A    111.88    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=1.247;QD=6.99;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538994    GT:AD:DP:GQ:PL    0/1:10,6:16:99:142,0,366
11    68548468    rs11228349    G    A    43.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.49;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538994    GT:AD:DP:GQ:PL    0/1:1,2:3:15.67:73,0,16
11    68549340    rs2228502    A    G    1047.95    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=70;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.361;QD=14.97;ReadPosRankSum=-1.118;SNPEFF_AMINO_ACID_CHANGE=F417;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68549239_68549427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    0/1:27,43:70:99:1078,0,805
11    68552486    rs2305507    G    A    351.46    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=2.299;DB;DP=25;Dels=0.0;FS=7.929;HRun=0;HaplotypeScore=3.235;MQ=60.0;MQ0=0;MQRankSum=0.724;QD=14.06;ReadPosRankSum=-1.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538994    GT:AD:DP:GQ:PL    0/1:9,16:25:99:381,0,195
11    68560787    rs11228356    C    T    167.37    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.362;QD=9.3;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=E321;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68560783_68560870;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    0/1:11,7:18:99:197,0,395
11    68561004    rs3763830    T    G    41.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.22;MQ0=0;MQRankSum=-0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:72,0,28
11    68562288    rs140958507    C    T    695.95    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.74;DB;DP=52;Dels=0.0;FS=2.556;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.183;QD=13.38;ReadPosRankSum=-2.747;SNPEFF_AMINO_ACID_CHANGE=R288Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68562272_68562379;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    0/1:27,25:52:99:726,0,830
11    68566648    rs111436340    A    AC    50.37    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=3.645;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=131.1184;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=-2.362;QD=1.87;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    0/1:21,6:27:89.40:89,0,801
11    68566839    rs3019603    G    A    1150.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265641    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1183,111,0
11    68668208    rs668576    A    G    356.40    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.662;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.277;QD=15.5;ReadPosRankSum=0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362034    GT:AD:DP:GQ:PL    0/1:12,11:23:99:386,0,341
11    68671104    rs629426    A    G    164.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=21;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.102;QD=7.82;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362034    GT:AD:DP:GQ:PL    0/1:12,9:21:99:194,0,439
11    68671280    rs111612765    G    GCCGCCGCCATCTTC    2108.17    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.133;DB;DP=35;FS=6.744;HRun=0;HaplotypeScore=330.4327;IndelType=I;MQ=52.95;MQ0=0;MQRankSum=-3.912;QD=60.23;ReadPosRankSum=-0.448;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    0/1:25,4:35:99:2147,0,2058
11    68671419    rs4930624    C    T    82.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545146    GT:AD:DP:GQ:PL    0/1:1,3:4:24.09:112,0,24
11    68675468    rs34242855    C    CT    396.74    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.203;DB;DP=24;FS=0.0;HRun=13;HaplotypeScore=137.2921;IndelType=I;MQ=56.48;MQ0=0;MQRankSum=-1.014;QD=16.53;ReadPosRankSum=0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    0/1:4,19:24:13.36:436,0,13
11    68675930    rs10896378    G    T    90.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.289;QD=7.53;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545146    GT:AD:DP:GQ:PL    0/1:8,4:12:99:120,0,280
11    68678962    rs560096    T    C    1214.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=L201S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68678908_68679071;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    1/1:0,36:37:96.31:1248,96,0
11    68682402    rs10896380    A    G    574.63    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.891;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0463;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=11.27;ReadPosRankSum=1.06;SNPEFF_AMINO_ACID_CHANGE=I275V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68682291_68682491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    0/1:29,21:51:99:605,0,730
11    68701948    rs11228413    C    T    149.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=10.68;ReadPosRankSum=-0.545;SNPEFF_AMINO_ACID_CHANGE=V518;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68701932_68702026;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    0/1:7,7:14:99:179,0,215
11    68702803    rs7122089    C    G    197.45    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.735;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.77;QD=7.05;ReadPosRankSum=1.46;SNPEFF_AMINO_ACID_CHANGE=P557A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68702767_68702890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    0/1:19,9:28:99:227,0,560
11    68703009    rs598255    C    G    413.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536803    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:446,33,0
11    68703959    rs622082    A    G    955.99    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.393;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.323;QD=19.51;ReadPosRankSum=0.625;SNPEFF_AMINO_ACID_CHANGE=T671A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68703705_68704559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    0/1:18,31:49:99:986,0,503
11    68704028    rs2236654    C    T    201.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=10.06;ReadPosRankSum=0.887;SNPEFF_AMINO_ACID_CHANGE=R694W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68703705_68704559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    0/1:12,8:20:99:231,0,319
11    68704264    rs546382    C    T    491.42    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=2.825;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=19.66;ReadPosRankSum=0.845;SNPEFF_AMINO_ACID_CHANGE=S772;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68703705_68704559;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255078    GT:AD:DP:GQ:PL    0/1:8,17:25:99:521,0,175
11    68705504    rs513615    G    T    113.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=12.56;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536803    GT:AD:DP:GQ:PL    0/1:5,4:9:99:143,0,157
11    68705527    rs3794031    C    T    131.84    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.988;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=11.99;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536803    GT:AD:DP:GQ:PL    0/1:5,6:11:99:162,0,142
11    68705936    rs488792    T    G    47.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    68706848    rs569777    G    A    82.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.69;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539064    GT:AD:DP:GQ:PL    0/1:1,3:4:20.46:113,0,20
11    68706935    rs568862    A    G    306.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=23.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGHMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539064    GT:AD:DP:GQ:PL    1/1:0,12:13:30.05:340,30,0
11    68748003    rs34847539    T    C    281.58    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.286;DB;DP=21;Dels=0.0;FS=4.32;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=13.41;ReadPosRankSum=-0.122;SNPEFF_AMINO_ACID_CHANGE=T151;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68747490_68748455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309106    GT:AD:DP:GQ:PL    0/1:11,10:21:99:312,0,279
11    68773403    rs11544722    G    A    34.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.68;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=C125;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68771866_68773729;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309099    GT:AD:DP:GQ:PL    0/1:3,3:6:64.10:64,0,83
11    68773740    rs60308539    G    A    428.68    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.57;DB;DP=37;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=0.655;QD=11.59;ReadPosRankSum=1.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320913    GT:AD:DP:GQ:PL    0/1:20,17:37:99:459,0,595
11    68777183    rs11228437    G    T    136.49    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=17.06;ReadPosRankSum=-0.322;SNPEFF_AMINO_ACID_CHANGE=L63I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68776885_68777425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320913    GT:AD:DP:GQ:PL    0/1:3,5:8:99:166,0,100
11    68777323    rs11544721    T    C    98.55    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.006;QD=4.28;ReadPosRankSum=-0.783;SNPEFF_AMINO_ACID_CHANGE=K16R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68777322_68777425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRGPRF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309099    GT:AD:DP:GQ:PL    0/1:18,5:23:99:129,0,582
11    68822739    rs1470892    T    C    2893.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9454;MQ=59.4;MQ0=0;QD=31.12;SNPEFF_AMINO_ACID_CHANGE=A116;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68822643_68822820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2927,226,0
11    68825037    rs3750973    A    C    998.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534832    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1032,75,0
11    68830226    rs10792015    G    A    295.09    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.936;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.176;QD=14.05;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:11,10:21:99:325,0,390
11    68830628    rs3750972    T    G    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
11    68831166    rs11228471    C    G    43.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:74,0,24
11    68831293    rs11228472    C    G    48.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=8.02;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:3,3:6:78.12:78,0,108
11    68834831    rs7950657    G    A    144.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.951;QD=14.47;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,126
11    68834968    rs6591368    T    C    1435.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.24;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1468,108,0
11    68835182    rs10750840    T    A    67.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.25;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:3,3:6:97.50:98,0,105
11    68837794    rs61881024    A    G    99.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=12.44;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,145
11    68838028    rs3829236    C    T    331.91    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.03;MQ0=0;MQRankSum=-0.29;QD=13.83;ReadPosRankSum=-0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:11,13:24:99:362,0,337
11    68839334    rs10896415    G    A    400.44    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.997;DB;DP=21;Dels=0.0;FS=9.103;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=19.07;ReadPosRankSum=-0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:6,15:21:99:430,0,149
11    68840014    rs3750963    G    A    246.69    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.022;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.682;QD=16.45;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:7,8:15:99:277,0,150
11    68840160    rs3750965    A    G    575.06    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=45;Dels=0.0;FS=1.181;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.148;QD=12.78;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=K291R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68840095_68840176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535009    GT:AD:DP:GQ:PL    0/1:24,21:45:99:605,0,635
11    68840389    .    C    T    272.74    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DP=33;Dels=0.0;FS=3.64;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.791;QD=8.26;ReadPosRankSum=1.561;SNPEFF_AMINO_ACID_CHANGE=R299C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68840383_68840469;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535009    GT:AD:DP:GQ:PL    0/1:21,12:33:99:303,0,590
11    68840397    rs1466221    T    C    300.47    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=34;Dels=0.0;FS=6.1;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.018;QD=8.84;ReadPosRankSum=0.829;SNPEFF_AMINO_ACID_CHANGE=Y301;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68840383_68840469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535009    GT:AD:DP:GQ:PL    0/1:21,13:34:99:330,0,688
11    68840412    rs1466220    C    G    371.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=35;Dels=0.0;FS=11.168;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.017;QD=10.6;ReadPosRankSum=-0.488;SNPEFF_AMINO_ACID_CHANGE=L306;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68840383_68840469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535009    GT:AD:DP:GQ:PL    0/1:21,14:35:99:401,0,631
11    68840617    rs3750966    T    A    165.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
11    68845867    rs7945151    G    A    34.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=4.99;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:3,4:7:64.91:65,0,107
11    68846098    rs4930649    A    G    1283.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.56;MQ0=0;QD=26.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1317,105,0
11    68846519    rs7124310    A    C    577.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:610,45,0
11    68851414    rs2376558    T    C    468.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=29.28;SNPEFF_AMINO_ACID_CHANGE=L421P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68851413_68851484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356782    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:501,39,0
11    68851466    rs896973    G    T    162.33    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.545;QD=10.15;ReadPosRankSum=0.068;SNPEFF_AMINO_ACID_CHANGE=A438;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68851413_68851484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356782    GT:AD:DP:GQ:PL    0/1:8,7:15:99:192,0,211
11    68853033    rs12273080    T    G    384.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.07;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:417,36,0
11    68855233    rs1551305    G    A    40.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294309    GT:AD:DP:GQ:PL    0/1:2,2:4:50.98:71,0,51
11    68855363    rs3829241    G    A    141.22    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3391;MQ=57.39;MQ0=0;MQRankSum=-0.106;QD=7.85;ReadPosRankSum=-0.635;SNPEFF_AMINO_ACID_CHANGE=G552E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_68855343_68855671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542467    GT:AD:DP:GQ:PL    0/1:10,7:18:99:171,0,245
11    68855483    rs1551306    G    A    71.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.72;QD=11.99;ReadPosRankSum=-1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442692    GT:AD:DP:GQ:PL    0/1:2,4:6:68.41:102,0,68
11    69063136    rs7117236    C    T    751.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=58;Dels=0.0;FS=13.391;HRun=0;HaplotypeScore=1.6553;MQ=59.6;MQ0=0;MQRankSum=-0.16;QD=12.95;ReadPosRankSum=0.884;SNPEFF_AMINO_ACID_CHANGE=A15;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_69062868_69064754;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEOV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535407    GT:AD:DP:GQ:PL    0/1:29,29:58:99:781,0,695
11    69063393    rs7103126    T    C    1032.56    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.427;DB;DP=106;Dels=0.0;FS=1.617;HRun=0;HaplotypeScore=0.8667;MQ=59.39;MQ0=0;MQRankSum=-0.777;QD=9.74;ReadPosRankSum=0.835;SNPEFF_AMINO_ACID_CHANGE=V101A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_69062868_69064754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEOV;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535407    GT:AD:DP:GQ:PL    0/1:58,47:106:99:1063,0,1831
11    69063510    rs11539762    G    A    716.14    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.292;DB;DP=64;Dels=0.0;FS=7.922;HRun=2;HaplotypeScore=0.7887;MQ=59.64;MQ0=0;MQRankSum=2.675;QD=11.19;ReadPosRankSum=-0.078;SNPEFF_AMINO_ACID_CHANGE=R140Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_69062868_69064754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEOV;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535407    GT:AD:DP:GQ:PL    0/1:36,28:64:99:746,0,1183
11    69063728    rs11228610    G    C    119.30    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.898;DB;DP=18;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=6.63;ReadPosRankSum=0.091;SNPEFF_AMINO_ACID_CHANGE=G213R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_69062868_69064754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEOV;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535407    GT:AD:DP:GQ:PL    0/1:11,7:18:99:149,0,380
11    69063767    rs12274095    C    A    138.35    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.58;ReadPosRankSum=-0.387;SNPEFF_AMINO_ACID_CHANGE=P226T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_69062868_69064754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEOV;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535407    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,170
11    69462836    rs137904082    C    T    1017.47    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.657;DB;DP=66;Dels=0.0;FS=0.934;HRun=1;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;MQRankSum=1.298;QD=15.42;ReadPosRankSum=0.552;SNPEFF_AMINO_ACID_CHANGE=L217;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_69462762_69462910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227507    GT:AD:DP:GQ:PL    0/1:28,38:66:99:1047,0,772
11    69588729    rs2073464    G    A    191.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000168712    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:224,18,0
11    69625511    rs7932320    T    C    333.45    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.352;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2966;MQ=58.95;MQ0=0;MQRankSum=-1.062;QD=7.58;ReadPosRankSum=-0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334134    GT:AD:DP:GQ:PL    0/1:26,17:44:99:363,0,872
11    69630973    rs3926882    G    A    200.48    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=11.79;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334134    GT:AD:DP:GQ:PL    0/1:9,8:17:99:230,0,306
11    69630978    rs7483837    G    A    249.91    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.742;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=14.7;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334134    GT:AD:DP:GQ:PL    0/1:9,8:17:99:280,0,250
11    69924226    rs2509134    C    T    115.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355303    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
11    69924352    rs11233117    C    G    75.64    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=18;Dels=0.0;FS=6.532;HRun=2;HaplotypeScore=1.4725;MQ=54.65;MQ0=0;MQRankSum=-0.817;QD=4.2;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355303    GT:AD:DP:GQ:PL    0/1:13,5:18:99:106,0,226
11    69933891    rs76718681    G    A    493.27    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.446;DB;DP=35;Dels=0.0;FS=1.348;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.413;QD=14.09;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=E20K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_69933858_69934190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:18,17:35:99:523,0,512
11    69948947    rs117783271    G    A    36.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:66,0,28
11    69949036    rs12293095    C    T    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.81;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:69,0,72
11    69949135    rs36055874    GCC    G    766.51    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=4.269;DB;DP=51;FS=1.758;HRun=7;HaplotypeScore=204.2772;IndelType=D;MQ=59.76;MQ0=0;MQRankSum=0.213;QD=15.03;ReadPosRankSum=1.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:26,25:51:99:806,0,1128
11    69949444    rs12293326    C    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:72,0,69
11    69954412    rs2509182    A    G    2887.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5774;MQ=59.53;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2921,232,0
11    69957720    rs11234403    G    T    710.29    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.665;QD=16.91;ReadPosRankSum=1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:20,22:42:99:740,0,639
11    69957940    rs2515251    C    A    2197.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.6;MQ0=0;QD=31.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531604    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2230,178,0
11    69958066    rs2515252    T    C    101.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=20.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531604    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:134,12,0
11    69962642    rs2515245    A    G    1107.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531604    GT:AD:DP:GQ:PL    1/1:0,35:35:87.26:1141,87,0
11    69970412    rs2509160    G    A    355.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.746;DB;DP=22;Dels=0.0;FS=9.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.173;QD=16.14;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:9,12:22:99:385,0,251
11    69970637    rs2515258    A    G    358.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:392,30,0
11    69999122    rs10160639    A    C    317.97    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.217;QD=13.25;ReadPosRankSum=-0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:13,11:24:99:348,0,458
11    69999252    rs3781663    G    A    404.70    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=29;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.9947;MQ=59.2;MQ0=0;MQRankSum=-0.115;QD=13.96;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:14,15:29:99:435,0,422
11    70002987    rs3781658    G    A    478.30    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=5.264;DB;DP=41;Dels=0.0;FS=4.15;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=11.67;ReadPosRankSum=1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    0/1:26,15:41:99:508,0,757
11    70007311    rs2276066    A    G    1589.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=R250;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_70007267_70007468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531349    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1623,126,0
11    70007392    rs2276067    A    G    2498.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.75;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.8644;MQ=59.73;MQ0=0;MQRankSum=0.703;QD=29.05;ReadPosRankSum=0.298;SNPEFF_AMINO_ACID_CHANGE=A119;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_70007267_70007468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531300    GT:AD:DP:GQ:PL    1/1:3,83:86:99:2531,154,0
11    70007484    rs2276068    C    G    1383.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1417,105,0
11    70007865    rs2155461    A    C    2418.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531300    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2452,211,0
11    70009720    rs11235460    G    A    506.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:540,39,0
11    70013186    rs3781654    G    T    280.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316296    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:313,24,0
11    70016922    rs7127005    C    T    576.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355303    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:610,48,0
11    70016944    rs3842255    AT    A    788.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=146.007;IndelType=D;MQ=58.88;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355303    GT:AD:DP:GQ:PL    1/1:1,21:22:60.20:830,60,0
11    70031909    rs7937532    C    T    150.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355303    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:183,15,0
11    70118251    rs670012    T    G    2125.51    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=1.667;DB;DP=121;Dels=0.0;FS=1.501;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.504;QD=17.57;ReadPosRankSum=-2.272;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_70118013_70118542;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000532024    GT:AD:DP:GQ:PL    0/1:52,69:121:99:2156,0,1559
11    70130388    rs12279046    A    G    77.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.87;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253925    GT:AD:DP:GQ:PL    0/1:3,3:6:83.04:107,0,83
11    70171567    rs113854811    TAC    T    317.11    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=3.577;DB;DP=34;FS=5.619;HRun=0;HaplotypeScore=103.614;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=-0.233;QD=9.33;ReadPosRankSum=0.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530746    GT:AD:DP:GQ:PL    0/1:22,12:34:99:356,0,766
11    70172204    rs55758686    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530746    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    70172975    rs6592537    C    T    1020.78    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=5.181;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.909;QD=22.68;ReadPosRankSum=-1.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530746    GT:AD:DP:GQ:PL    0/1:16,29:45:99:1051,0,420
11    70179672    rs2282481    C    T    118.82    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=9.9;ReadPosRankSum=1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525530    GT:AD:DP:GQ:PL    0/1:7,5:12:99:149,0,255
11    70181560    rs2276001    T    C    235.74    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.533;QD=16.84;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525530    GT:AD:DP:GQ:PL    0/1:5,9:14:99:266,0,169
11    70183336    rs58039907    C    T    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.91;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530932    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,150
11    70183737    rs17425511    C    G    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530932    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
11    70185325    rs1061328    C    T    579.41    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.882;DB;DP=54;Dels=0.0;FS=1.104;HRun=0;HaplotypeScore=1.6988;MQ=58.79;MQ0=0;MQRankSum=1.446;QD=10.73;ReadPosRankSum=1.355;SNPEFF_AMINO_ACID_CHANGE=D27;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_70185277_70185412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544950    GT:AD:DP:GQ:PL    0/1:32,21:54:99:609,0,980
11    70190019    rs55738915    C    T    114.90    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=14.36;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532443    GT:AD:DP:GQ:PL    0/1:3,5:8:65.29:145,0,65
11    70194175    rs7935969    G    A    71.94    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.99;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253925    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,137
11    70194624    rs12295241    G    A    65.60    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=5.96;ReadPosRankSum=1.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528284    GT:AD:DP:GQ:PL    0/1:7,3:11:95.60:96,0,255
11    70200529    rs17853270    C    T    354.98    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.241;DB;DP=25;Dels=0.0;FS=18.456;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.144;QD=14.2;ReadPosRankSum=1.241;SNPEFF_AMINO_ACID_CHANGE=V259;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_70200407_70200558;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544950    GT:AD:DP:GQ:PL    0/1:13,12:25:99:385,0,337
11    70200594    rs7943389    C    T    109.76    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=9.15;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253925    GT:AD:DP:GQ:PL    0/1:7,5:12:99:140,0,254
11    70202127    rs66989619    G    C    253.08    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.025;QD=10.54;ReadPosRankSum=1.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526074    GT:AD:DP:GQ:PL    0/1:14,10:24:99:283,0,486
11    70208311    rs7130178    G    A    243.55    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.296;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9831;MQ=57.79;MQ0=0;MQRankSum=0.0;QD=12.18;ReadPosRankSum=0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527612    GT:AD:DP:GQ:PL    0/1:11,9:20:99:274,0,246
11    70208350    rs10751231    G    A    835.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527612    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:869,66,0
11    70218548    rs10466703    C    T    918.65    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=52;Dels=0.0;FS=2.921;HRun=0;HaplotypeScore=0.9916;MQ=59.56;MQ0=0;MQRankSum=-0.67;QD=17.67;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253925    GT:AD:DP:GQ:PL    0/1:24,28:52:99:949,0,830
11    70221204    rs67283107    C    T    219.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.433;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.424;QD=10.95;ReadPosRankSum=-0.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253925    GT:AD:DP:GQ:PL    0/1:12,8:20:99:249,0,330
11    70221356    rs10793070    G    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253925    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    70253586    rs569732    T    C    451.09    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=36;Dels=0.0;FS=12.546;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.032;QD=12.53;ReadPosRankSum=1.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301843    GT:AD:DP:GQ:PL    0/1:21,15:36:99:481,0,650
11    70260598    rs34053053    C    T    331.80    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.341;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.07;MQ0=0;MQRankSum=0.301;QD=13.27;ReadPosRankSum=0.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527622    GT:AD:DP:GQ:PL    0/1:14,11:25:99:362,0,453
11    70260609    rs7932550    T    C    379.72    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;MQRankSum=0.637;QD=11.51;ReadPosRankSum=-0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527622    GT:AD:DP:GQ:PL    0/1:19,14:33:99:410,0,662
11    70261536    rs10431177    A    G    109.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.191;QD=9.12;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527622    GT:AD:DP:GQ:PL    0/1:6,6:12:99:139,0,206
11    70265673    .    A    G    180.60    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.568;QD=16.42;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525276    GT:AD:DP:GQ:PL    0/1:5,6:11:99:211,0,131
11    70267348    rs34966697    G    GT    153.06    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=22.4833;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=19.13;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532334    GT:AD:DP:GQ:PL    0/1:3,5:8:87.56:192,0,88
11    70268910    rs12802851    C    T    106.06    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=15.15;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483662    GT:AD:DP:GQ:PL    0/1:3,4:7:99:136,0,99
11    70274979    rs12803975    T    C    173.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525852    GT:AD:DP:GQ:PL    1/1:0,6:8:18.04:207,18,0
11    70279927    rs17160866    G    A    106.67    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.466;QD=9.7;ReadPosRankSum=-1.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498223    GT:AD:DP:GQ:PL    0/1:5,6:11:99:137,0,184
11    70281007    rs7131282    T    C    203.35    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.964;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=58.63;MQ0=0;MQRankSum=1.905;QD=11.96;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301843    GT:AD:DP:GQ:PL    0/1:9,8:17:99:233,0,299
11    70282629    rs6894    A    C    310.28    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.941;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=11.08;ReadPosRankSum=1.552;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393747    GT:AD:DP:GQ:PL    0/1:17,11:28:99:340,0,581
11    70349061    rs7110158    A    G    2129.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294018    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2162,163,0
11    70507605    rs72465113    TACACACACACACACACACACACACACACACAC    T    2257.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=854.3267;IndelType=D;MQ=47.17;MQ0=0;QD=77.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294018    GT:AD:DP:GQ:PL    1/1:4,23:29:75.23:2300,75,0
11    70544937    rs7117514    A    G    573.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.822;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.456;QD=30.18;ReadPosRankSum=0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294018    GT:AD:DP:GQ:PL    1/1:1,18:19:10.49:606,10,0
11    70672399    rs3019835    G    A    86.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294018    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
11    70718843    rs517114    T    A    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294018    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    70742841    rs3017482    A    G    82.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338508    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
11    70789000    rs11238042    G    A    138.23    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=10.63;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338508    GT:AD:DP:GQ:PL    0/1:8,5:13:99:168,0,260
11    70821250    .    C    T    77.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.82;MQ0=0;MQRankSum=0.406;QD=12.84;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338508    GT:AD:DP:GQ:PL    0/1:3,3:6:90.97:107,0,91
11    71117319    rs7105151    G    A    342.72    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=14.9;ReadPosRankSum=0.831;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=AP002387.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331301    GT:AD:DP:GQ:PL    0/1:11,12:23:99:373,0,355
11    71117463    rs7125171    T    C    876.61    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.308;DB;DP=64;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7825;MQ=59.28;MQ0=0;MQRankSum=-0.742;QD=13.7;ReadPosRankSum=0.405;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=AP002387.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331301    GT:AD:DP:GQ:PL    0/1:29,35:64:99:907,0,899
11    71117644    rs1557465    A    G    688.39    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.716;DB;DP=77;Dels=0.0;FS=3.675;HRun=0;HaplotypeScore=3.5611;MQ=60.0;MQ0=0;MQRankSum=0.152;QD=8.94;ReadPosRankSum=-1.456;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=AP002387.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331301    GT:AD:DP:GQ:PL    0/1:48,29:77:99:718,0,1677
11    71117715    rs1557466    A    G    682.91    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.819;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8808;MQ=59.7;MQ0=0;MQRankSum=0.288;QD=10.84;ReadPosRankSum=-0.864;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=AP002387.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331301    GT:AD:DP:GQ:PL    0/1:38,25:63:99:713,0,1333
11    71146577    rs909217    G    A    134.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.101;QD=9.6;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=G174;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71146488_71146885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533800    GT:AD:DP:GQ:PL    0/1:8,6:14:99:164,0,170
11    71146691    rs760241    A    G    306.07    PASS    AB=0.063;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=16;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;MQRankSum=-1.159;QD=19.13;ReadPosRankSum=-1.159;SNPEFF_AMINO_ACID_CHANGE=M220T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71146354_71147019;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525137    GT:AD:DP:GQ:PL    0/1:1,15:16:4.70:335,0,5
11    71149069    rs949176    A    G    939.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=59.11;MQ0=0;QD=36.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525346    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:972,72,0
11    71149137    rs1790326    G    A    425.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525346    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:458,33,0
11    71149856    rs1792265    C    T    632.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=56.04;MQ0=0;QD=35.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525346    GT:AD:DP:GQ:PL    1/1:0,18:18:54.13:666,54,0
11    71150247    rs1792264    C    T    41.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525346    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:71,0,25
11    71152258    rs736894    C    T    313.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.566;DB;DP=35;Dels=0.0;FS=1.402;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=8.95;ReadPosRankSum=-0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525346    GT:AD:DP:GQ:PL    0/1:21,14:35:99:343,0,663
11    71152461    rs949177    A    G    752.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=N114;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71152273_71152486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527316    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:786,57,0
11    71153459    rs11603330    C    A    309.87    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=28.17;ReadPosRankSum=0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527452    GT:AD:DP:GQ:PL    0/1:2,9:11:40.72:340,0,41
11    71155129    rs4316537    G    A    215.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.372;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.174;QD=13.45;ReadPosRankSum=-0.637;SNPEFF_AMINO_ACID_CHANGE=T45;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71155039_71155165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527316    GT:AD:DP:GQ:PL    0/1:8,8:16:99:245,0,230
11    71155153    rs1790334    A    G    396.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=28.33;SNPEFF_AMINO_ACID_CHANGE=T37;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71155039_71155165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527316    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:430,33,0
11    71155171    rs1044482    C    T    207.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=16;Dels=0.0;FS=2.92;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.533;QD=12.97;ReadPosRankSum=-0.533;SNPEFF_AMINO_ACID_CHANGE=Q43;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71155080_71155299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHCR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529990    GT:AD:DP:GQ:PL    0/1:8,8:16:99:237,0,148
11    71164471    rs12789751    G    A    177.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=17.75;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319023    GT:AD:DP:GQ:PL    0/1:4,6:10:99:207,0,103
11    71166337    rs1790373    A    G    513.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319023    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:547,42,0
11    71169547    rs2276360    G    C    651.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.221;DB;DP=42;Dels=0.0;FS=7.425;HRun=0;HaplotypeScore=0.7887;MQ=58.89;MQ0=0;MQRankSum=-1.395;QD=15.51;ReadPosRankSum=0.013;SNPEFF_AMINO_ACID_CHANGE=V74L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71169474_71169590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319023    GT:AD:DP:GQ:PL    0/1:21,21:42:99:682,0,630
11    71169648    rs2276361    A    G    405.01    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=24;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.06;QD=16.88;ReadPosRankSum=-0.954;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533612    GT:AD:DP:GQ:PL    0/1:9,15:24:99:435,0,297
11    71174452    rs2276362    A    G    173.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.893;DB;DP=20;Dels=0.0;FS=7.06;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=8.67;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525245    GT:AD:DP:GQ:PL    0/1:12,8:20:99:203,0,393
11    71174553    rs1629220    C    T    167.34    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-2.454;QD=9.84;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525245    GT:AD:DP:GQ:PL    0/1:9,8:17:99:197,0,300
11    71174589    rs1629304    T    C    214.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525245    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:248,24,0
11    71183474    rs2282621    C    T    445.86    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.767;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.879;QD=13.51;ReadPosRankSum=0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319023    GT:AD:DP:GQ:PL    0/1:12,21:33:99:476,0,341
11    71183477    rs2282620    C    T    387.49    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.059;QD=10.76;ReadPosRankSum=1.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319023    GT:AD:DP:GQ:PL    0/1:15,21:36:99:417,0,447
11    71183645    rs2282619    T    C    359.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533769    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:393,33,0
11    71183737    rs2282618    T    C    35.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533769    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
11    71184498    rs2276358    G    A    283.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=16;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.9987;MQ=57.05;MQ0=0;MQRankSum=-1.849;QD=17.74;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529120    GT:AD:DP:GQ:PL    0/1:6,9:16:82.10:314,0,82
11    71184678    rs7950441    A    C    834.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_AMINO_ACID_CHANGE=Q204H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71184615_71184732;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319023    GT:AD:DP:GQ:PL    1/1:0,27:27:69.18:867,69,0
11    71185357    rs1123007    G    A    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529120    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:161,12,0
11    71185479    rs2276354    T    C    1109.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_AMINO_ACID_CHANGE=C235;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71185441_71185572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319023    GT:AD:DP:GQ:PL    1/1:0,31:31:87.26:1143,87,0
11    71185518    rs2186778    T    C    1089.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=I248;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71185441_71185572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319023    GT:AD:DP:GQ:PL    1/1:0,33:33:87.26:1122,87,0
11    71189436    rs2276353    T    C    170.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528509    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:203,15,0
11    71192225    rs3763860    T    G    234.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528509    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:268,21,0
11    71192529    .    AT    A    34.27    QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DP=24;FS=0.0;HRun=17;HaplotypeScore=185.432;IndelType=D;MQ=53.34;MQ0=0;MQRankSum=0.412;QD=1.43;ReadPosRankSum=-1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527227    GT:AD:DP:GQ:PL    0/1:17,6:24:73.30:73,0,103
11    71192602    rs3814731    T    C    98.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527227    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:131,12,0
11    71194209    rs3794066    A    G    255.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527227    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
11    71238205    rs2002906    C    T    2208.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=56.46;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NADSYN1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,64:66:99:2241,178,0
11    71238453    rs147685834    G    C    1547.60    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.112;DB;DP=131;Dels=0.0;FS=1.545;HRun=0;HaplotypeScore=8.7649;MQ=55.63;MQ0=2;MQRankSum=2.038;QD=11.81;ReadPosRankSum=1.21;SNPEFF_AMINO_ACID_CHANGE=C36S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71238313_71239210;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398536    GT:AD:DP:GQ:PL    0/1:62,68:131:99:1578,0,1596
11    71238675    rs11270450    C    CCTGCTGCCAGTCCAGCTGCTGTAAGCCCTG    12542.72    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=174;FS=10.472;HRun=0;HaplotypeScore=3394.2124;IndelType=I;MQ=46.53;MQ0=2;MQRankSum=-1.218;QD=66.72;ReadPosRankSum=1.189;SNPEFF_AMINO_ACID_CHANGE=S110SCCQSSCCKPC;SNPEFF_CODON_CHANGE=tcc/tcCTGCTGCCAGTCCAGCTGCTGTAAGCCCTGc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_11_71238313_71239210;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398536    GT:AD:DP:GQ:PL    0/1:139,27:174:99:12543,0,158
11    71248962    rs141235741    AAAC    A    292.23    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=3.18;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=114.9199;IndelType=D;MQ=54.43;MQ0=0;MQRankSum=1.509;QD=10.44;ReadPosRankSum=1.186;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398534    GT:AD:DP:GQ:PL    0/1:19,9:28:99:331,0,1025
11    71249125    .    A    AGGCTGTGGCTCCGGCTGTGGG    5226.03    PASS    AC=2;AF=1.00;AN=2;DP=90;FS=0.0;HRun=0;HaplotypeScore=1157.5904;IndelType=I;MQ=43.85;MQ0=3;QD=53.33;SNPEFF_AMINO_ACID_CHANGE=-9GCGSGCG;SNPEFF_CODON_CHANGE=-/GGCTGTGGCTCCGGCTGTGGG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_11_71249071_71250253;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398534    GT:AD:DP:GQ:PL    1/1:37,36:90:99:5226,147,0
11    71249183    rs55921335    T    C    2421.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=51.33;MQ0=3;QD=26.91;SNPEFF_AMINO_ACID_CHANGE=C28R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71249071_71250253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398534    GT:AD:DP:GQ:PL    1/1:2,88:90:99:2455,199,0
11    71249386    rs7101792    T    C    5114.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0231;MQ=57.71;MQ0=0;QD=29.57;SNPEFF_AMINO_ACID_CHANGE=C95;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71249071_71250253;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398534    GT:AD:DP:GQ:PL    1/1:0,173:173:99:5115,391,0
11    71260243    rs2664    T    C    2513.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=59.43;MQ0=0;QD=31.04;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528743    GT:AD:DP:GQ:PL    1/1:0,80:81:99:2547,214,0
11    71260296    rs2663    G    A    1302.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.38;MQ0=0;QD=35.22;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528743    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1336,102,0
11    71276632    rs36164574    T    C    2608.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.4;MQ0=5;QD=28.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2642,211,0
11    71276655    rs188029416    G    A    658.39    MQFilter40    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.915;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.3528;MQ=39.27;MQ0=6;MQRankSum=-3.401;QD=8.33;ReadPosRankSum=-0.618;SNPEFF_AMINO_ACID_CHANGE=G8R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71276634_71276853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    0/1:40,34:79:99:688,0,852
11    71276681    rs113879786    T    C    869.56    FSFilter60    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=3.502;DB;DP=76;Dels=0.0;FS=68.03;HRun=0;HaplotypeScore=0.8941;MQ=44.88;MQ0=5;MQRankSum=-3.302;QD=11.44;ReadPosRankSum=3.088;SNPEFF_AMINO_ACID_CHANGE=G16;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71276634_71276853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    0/1:29,42:76:99:900,0,570
11    71276702    rs113977776    C    T    408.35    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=3.155;DB;DP=66;Dels=0.0;FS=50.716;HRun=1;HaplotypeScore=2.5494;MQ=43.58;MQ0=4;MQRankSum=-3.292;QD=6.19;ReadPosRankSum=-0.71;SNPEFF_AMINO_ACID_CHANGE=G23;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71276634_71276853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    0/1:38,24:66:99:438,0,933
11    71276769    rs191340120    G    A    352.32    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=1.992;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=42.39;MQ0=0;MQRankSum=-0.694;QD=4.46;ReadPosRankSum=-0.487;SNPEFF_AMINO_ACID_CHANGE=V46I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71276634_71276853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    0/1:47,30:79:99:382,0,877
11    71276831    rs71473841    C    G    1272.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.7447;MQ=44.4;MQ0=0;MQRankSum=0.949;QD=15.52;ReadPosRankSum=0.464;SNPEFF_AMINO_ACID_CHANGE=S66;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71276634_71276853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    1/1:9,73:82:58.42:1305,58,0
11    71276909    .    G    GGGCTGTGGCTCCTGTGGGGGCTCCAAGGGA    2017.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.388;DP=69;FS=11.066;HRun=0;HaplotypeScore=1264.3107;IndelType=I;MQ=44.58;MQ0=0;MQRankSum=1.815;QD=26.2;ReadPosRankSum=-0.987;SNPEFF_AMINO_ACID_CHANGE=-93GCGSCGGSKG;SNPEFF_CODON_CHANGE=-/GGCTGTGGCTCCTGTGGGGGCTCCAAGGGA;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_11_71276609_71277666;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398531    GT:AD:DP:GQ:PL    1/1:28,22:69:84.24:2059,84,0
11    71279894    rs9651733    C    T    479.57    HaplotypeScoreFilter13    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.595;DB;DP=70;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=16.404;MQ=54.14;MQ0=0;MQRankSum=0.776;QD=6.85;ReadPosRankSum=-1.908;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398531    GT:AD:DP:GQ:PL    0/1:45,25:70:99:510,0,1128
11    71279902    rs111962306    C    T    371.03    HaplotypeScoreFilter13    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.07;DB;DP=68;Dels=0.0;FS=2.637;HRun=1;HaplotypeScore=17.2141;MQ=52.66;MQ0=1;MQRankSum=2.008;QD=5.46;ReadPosRankSum=0.302;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398531    GT:AD:DP:GQ:PL    0/1:51,16:68:99:401,0,1109
11    71279907    rs111350381    A    G    385.41    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.424;DB;DP=70;Dels=0.0;FS=4.297;HRun=1;HaplotypeScore=7.3855;MQ=52.89;MQ0=1;MQRankSum=3.099;QD=5.51;ReadPosRankSum=1.18;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    0/1:53,17:70:99:415,0,1205
11    71279936    rs72475645    A    C    74.55    QDFilter2    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=69;Dels=0.0;FS=1.438;HRun=2;HaplotypeScore=0.9665;MQ=53.15;MQ0=1;MQRankSum=-5.552;QD=1.08;ReadPosRankSum=2.299;SNPEFF_AMINO_ACID_CHANGE=K157Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71279909_71279980;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    0/1:50,19:69:99:105,0,1743
11    71280031    rs111626347    C    A    408.35    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=57.38;MQ0=0;MQRankSum=-0.027;QD=10.21;ReadPosRankSum=-0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376536    GT:AD:DP:GQ:PL    0/1:23,17:40:99:438,0,794
11    71290520    rs4594025    G    A    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    71290580    rs11602969    G    A    70.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=14.06;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:2,3:5:42.09:100,0,42
11    71290670    rs2015464    C    G    232.25    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.71;MQ0=0;MQRankSum=-2.775;QD=8.01;ReadPosRankSum=0.753;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:18,11:29:99:262,0,583
11    71290740    rs4081429    A    C    552.30    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.886;DB;DP=60;Dels=0.0;FS=17.8;HRun=0;HaplotypeScore=1.832;MQ=54.56;MQ0=1;MQRankSum=-3.237;QD=9.05;ReadPosRankSum=1.701;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:37,23:60:99:582,0,1297
11    71290790    rs147397813    A    ACAGCAGCTGGACTGGGAGCAGCAGGACCTG    3284.09    PASS    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.446;DB;DP=71;FS=13.783;HRun=0;HaplotypeScore=1376.5055;IndelType=I;MQ=52.5;MQ0=1;MQRankSum=-5.655;QD=44.38;ReadPosRankSum=-0.464;SNPEFF_AMINO_ACID_CHANGE=C167SGPAAPSPAAG;SNPEFF_CODON_CHANGE=tgt/tCAGGTCCTGCTGCTCCCAGTCCAGCTGCTGgt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_11_71290760_71290831;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP5-11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376535    GT:AD:DP:GQ:PL    0/1:65,7:71:99:3284,0,5001
11    71304378    rs4945041    T    C    178.47    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=17;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.6651;MQ=53.61;MQ0=0;MQRankSum=-1.376;QD=10.5;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:8,9:17:99:208,0,218
11    71304391    rs4945042    G    A    196.77    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DB;DP=15;Dels=0.0;FS=5.219;HRun=0;HaplotypeScore=0.6651;MQ=54.09;MQ0=0;MQRankSum=-0.965;QD=13.12;ReadPosRankSum=-1.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:7,8:15:99:227,0,167
11    71304419    rs4945043    A    G    275.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=22;Dels=0.0;FS=2.048;HRun=0;HaplotypeScore=0.0;MQ=55.62;MQ0=0;MQRankSum=-1.352;QD=12.51;ReadPosRankSum=0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:12,10:22:99:305,0,413
11    71304774    rs2096802    C    T    1553.62    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.871;DB;DP=153;Dels=0.0;FS=0.629;HRun=0;HaplotypeScore=4.1156;MQ=49.97;MQ0=2;MQRankSum=-7.665;QD=10.15;ReadPosRankSum=0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:89,64:153:99:1584,0,2833
11    71304932    rs36047994    TTCG    T    237.73    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=4.537;DB;DP=73;FS=4.945;HRun=0;HaplotypeScore=261.8547;IndelType=D;MQ=40.43;MQ0=5;MQRankSum=0.455;QD=2.7;ReadPosRankSum=-3.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:68,20:73:99:277,0,3981
11    71305076    rs9735099    G    A    913.92    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=5.09;DB;DP=112;Dels=0.0;FS=1.88;HRun=0;HaplotypeScore=1.6553;MQ=46.66;MQ0=6;MQRankSum=-7.975;QD=8.16;ReadPosRankSum=-0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:59,51:112:99:944,0,1823
11    71305139    rs111635283    G    A    1784.19    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.858;DB;DP=131;Dels=0.0;FS=2.264;HRun=1;HaplotypeScore=0.9159;MQ=52.87;MQ0=2;MQRankSum=7.175;QD=13.62;ReadPosRankSum=0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:63,68:131:99:1814,0,1625
11    71305236    rs9734262    A    T    1321.68    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.415;DB;DP=117;Dels=0.0;FS=15.842;HRun=0;HaplotypeScore=0.0;MQ=46.86;MQ0=3;MQRankSum=-7.84;QD=11.3;ReadPosRankSum=-0.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:53,64:117:99:1352,0,1715
11    71305259    rs9734263    A    G    1206.26    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=115;Dels=0.0;FS=8.248;HRun=1;HaplotypeScore=2.9022;MQ=47.55;MQ0=3;MQRankSum=-7.939;QD=10.49;ReadPosRankSum=-0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000867.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343767    GT:AD:DP:GQ:PL    0/1:55,60:115:99:1236,0,1876
11    71331126    rs11234337    A    G    434.45    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.013;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.862;MQ=50.39;MQ0=0;MQRankSum=-5.542;QD=6.79;ReadPosRankSum=-0.148;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-757C15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530317    GT:AD:DP:GQ:PL    0/1:38,25:64:99:464,0,1207
11    71373284    rs72475696    G    A    34.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.03;MQ0=0;MQRankSum=-1.231;QD=6.99;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AP003498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408531    GT:AD:DP:GQ:PL    0/1:3,2:5:64.96:65,0,105
11    71373513    rs187448907    T    C    728.16    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=1.117;DB;DP=250;DS;Dels=0.0;FS=5.792;HRun=1;HaplotypeScore=1.7998;MQ=47.35;MQ0=1;MQRankSum=-8.193;QD=2.91;ReadPosRankSum=2.486;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AP003498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408531    GT:AD:DP:GQ:PL    0/1:196,54:250:99:758,0,6956
11    71373765    rs184533896    A    G    2655.41    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.967;DB;DP=242;DS;Dels=0.0;FS=4.047;HRun=0;HaplotypeScore=8.1778;MQ=39.34;MQ0=9;MQRankSum=2.222;QD=10.97;ReadPosRankSum=-0.554;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AP003498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408531    GT:AD:DP:GQ:PL    0/1:121,121:242:99:2685,0,3035
11    71464814    rs12807757    G    T    154.07    MQFilter40    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=19;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=37.52;MQ0=3;MQRankSum=-2.468;QD=8.11;ReadPosRankSum=-1.103;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2313N18.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527856    GT:AD:DP:GQ:PL    0/1:8,11:19:99:184,0,254
11    71498671    rs12283346    G    C    32.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.25;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=R30P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71498556_71498678;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:63,0,36
11    71500583    rs9666765    T    C    101.26    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.99;MQ0=0;MQRankSum=-0.143;QD=8.44;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    0/1:7,5:12:99:131,0,191
11    71501078    rs537572    A    C    294.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:327,27,0
11    71504475    rs3935309    T    C    1062.06    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.351;DB;DP=115;Dels=0.0;FS=0.839;HRun=0;HaplotypeScore=0.7887;MQ=42.75;MQ0=15;MQRankSum=-8.004;QD=9.16;ReadPosRankSum=0.561;SNPEFF_AMINO_ACID_CHANGE=V70A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71504426_71504527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359244    GT:AD:DP:GQ:PL    0/1:54,61:115:99:1092,0,1524
11    71506121    rs12801684    T    G    869.16    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9066;MQ=59.16;MQ0=0;MQRankSum=0.487;QD=12.42;ReadPosRankSum=0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    0/1:38,32:70:99:899,0,998
11    71507022    .    G    A    353.92    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.14;DP=107;Dels=0.0;FS=10.331;HRun=0;HaplotypeScore=1.8666;MQ=49.91;MQ0=1;MQRankSum=-5.729;QD=3.31;ReadPosRankSum=-0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    0/1:81,26:107:99:384,0,2641
11    71507311    rs4522196    T    A    657.47    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=39;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=0.0;MQ=56.27;MQ0=1;MQRankSum=1.535;QD=16.86;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    0/1:19,20:39:99:687,0,605
11    71507375    rs78272235    T    G    212.78    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9986;MQ=57.24;MQ0=0;MQRankSum=-0.386;QD=15.2;ReadPosRankSum=1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    0/1:6,8:14:99:243,0,189
11    71507385    rs6592335    A    C    120.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9986;MQ=56.4;MQ0=0;MQRankSum=-0.825;QD=10.98;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    0/1:6,5:11:99:151,0,196
11    71507427    rs636647    C    T    229.73    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.85;MQ0=0;MQRankSum=0.747;QD=28.72;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346333    GT:AD:DP:GQ:PL    0/1:1,7:8:14.50:260,0,14
11    71511869    rs3750916    C    T    86.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.0;MQ=51.57;MQ0=0;MQRankSum=0.825;QD=7.19;ReadPosRankSum=0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426628    GT:AD:DP:GQ:PL    0/1:8,4:12:99:116,0,256
11    71511925    rs3750915    C    A    180.04    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.25;MQ0=0;MQRankSum=0.572;QD=22.5;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426628    GT:AD:DP:GQ:PL    0/1:2,6:8:42.85:210,0,43
11    71526834    rs11235108    C    A    500.69    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=4.079;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9075;MQ=40.47;MQ0=3;MQRankSum=-5.417;QD=9.27;ReadPosRankSum=-0.857;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531320    GT:AD:DP:GQ:PL    0/1:26,28:54:99:531,0,788
11    71527458    rs10792945    C    G    301.24    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.959;DB;DP=66;Dels=0.0;FS=8.474;HRun=1;HaplotypeScore=0.8941;MQ=43.66;MQ0=8;MQRankSum=-6.319;QD=4.56;ReadPosRankSum=-0.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531320    GT:AD:DP:GQ:PL    0/1:36,30:66:99:331,0,1174
11    71527474    rs4021271    T    C    794.67    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.961;DB;DP=87;Dels=0.0;FS=2.413;HRun=0;HaplotypeScore=2.7122;MQ=44.15;MQ0=8;MQRankSum=-6.861;QD=9.13;ReadPosRankSum=-1.961;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531320    GT:AD:DP:GQ:PL    0/1:41,45:87:99:825,0,1239
11    71527696    rs4021274    C    A    1848.63    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=1.511;DB;DP=250;DS;Dels=0.0;FS=1.902;HRun=1;HaplotypeScore=3.6258;MQ=48.35;MQ0=1;MQRankSum=-11.448;QD=7.39;ReadPosRankSum=2.263;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:152,98:250:99:1879,0,4868
11    71527792    rs11235112    T    C    1677.76    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.398;DB;DP=234;DS;Dels=0.0;FS=33.849;HRun=2;HaplotypeScore=1.6648;MQ=47.94;MQ0=6;MQRankSum=-11.885;QD=7.17;ReadPosRankSum=0.233;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:138,96:234:99:1708,0,4503
11    71527895    rs10898678    C    T    2276.58    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=4.499;DB;DP=244;DS;Dels=0.0;FS=11.758;HRun=0;HaplotypeScore=1.4105;MQ=56.95;MQ0=0;MQRankSum=-1.23;QD=9.33;ReadPosRankSum=-0.075;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:125,119:244:99:2307,0,3801
11    71527896    rs56524498    G    A    2285.12    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=4.997;DB;DP=247;DS;Dels=0.0;FS=10.513;HRun=0;HaplotypeScore=1.4105;MQ=56.99;MQ0=0;MQRankSum=-0.258;QD=9.25;ReadPosRankSum=0.098;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:127,120:247:99:2315,0,3748
11    71528987    rs7936283    A    T    370.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.614;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.58;MQ0=0;MQRankSum=-3.335;QD=7.72;ReadPosRankSum=-1.476;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:32,16:48:99:401,0,1130
11    71529071    rs3841753    A    AT    513.11    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=62;FS=2.481;HRun=9;HaplotypeScore=251.2413;IndelType=I;MQ=53.1;MQ0=1;MQRankSum=-2.065;QD=8.14;ReadPosRankSum=-2.454;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:40,22:62:99:552,0,625
11    71529119    rs3819230    A    G    931.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.859;DB;DP=82;Dels=0.0;FS=15.247;HRun=1;HaplotypeScore=0.9665;MQ=48.36;MQ0=3;MQRankSum=-6.491;QD=11.36;ReadPosRankSum=1.379;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:41,41:82:99:961,0,1336
11    71529136    rs3819231    T    C    1231.68    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=0.658;DB;DP=94;Dels=0.0;FS=5.549;HRun=0;HaplotypeScore=5.3631;MQ=49.3;MQ0=3;MQRankSum=-6.332;QD=13.1;ReadPosRankSum=1.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:44,50:94:99:1262,0,1512
11    71529252    rs3819237    T    A    2737.52    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=5.876;DB;DP=178;Dels=0.0;FS=1.184;HRun=1;HaplotypeScore=2.7783;MQ=53.75;MQ0=0;MQRankSum=-2.604;QD=15.38;ReadPosRankSum=-0.131;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:80,97:178:99:2768,0,2460
11    71530767    .    C    T    933.35    MQFilter40    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=1.586;DP=248;DS;Dels=0.0;FS=6.905;HRun=0;HaplotypeScore=1.8316;MQ=15.53;MQ0=141;MQRankSum=1.193;QD=3.76;ReadPosRankSum=0.271;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:163,85:248:99:963,0,789
11    71532344    rs10898688    G    T    303.02    MQFilter40    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.962;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.08;MQ0=0;MQRankSum=-2.073;QD=10.82;ReadPosRankSum=-0.461;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:15,13:28:99:333,0,425
11    71532353    rs10898689    T    C    310.62    MQFilter40    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=3.078;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.14;MQ0=0;MQRankSum=-1.22;QD=9.41;ReadPosRankSum=0.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:19,14:33:99:341,0,656
11    71532725    rs36088573    T    C    80.95    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.983;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=35.67;MQ0=0;MQRankSum=-1.356;QD=5.06;ReadPosRankSum=1.03;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF705E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525199    GT:AD:DP:GQ:PL    0/1:10,6:16:99:111,0,336
11    71544105    rs10792966    G    C    124.40    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.09;MQ0=0;MQRankSum=-0.933;QD=8.89;ReadPosRankSum=-1.867;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB108B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328698    GT:AD:DP:GQ:PL    0/1:9,5:14:99:154,0,274
11    71544269    rs11235192    C    T    650.65    MQFilter40    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.519;DB;DP=103;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=21.93;MQ0=49;MQRankSum=0.415;QD=6.32;ReadPosRankSum=1.28;SNPEFF_AMINO_ACID_CHANGE=F8;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71544246_71544303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB108B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328698    GT:AD:DP:GQ:PL    0/1:50,53:103:99:681,0,673
11    71548465    rs12285436    A    G    2917.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=198;Dels=0.0;FS=2.627;HRun=1;HaplotypeScore=0.0;MQ=55.28;MQ0=0;MQRankSum=-6.137;QD=14.73;ReadPosRankSum=-0.366;SNPEFF_AMINO_ACID_CHANGE=I27V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71548445_71548608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB108B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328698    GT:AD:DP:GQ:PL    0/1:99,99:198:99:2947,0,2875
11    71548492    rs12793731    C    T    2890.77    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=1.819;DB;DP=215;Dels=0.0;FS=0.523;HRun=1;HaplotypeScore=3.8374;MQ=55.29;MQ0=0;MQRankSum=-7.384;QD=13.45;ReadPosRankSum=0.136;SNPEFF_AMINO_ACID_CHANGE=R36W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71548445_71548608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB108B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328698    GT:AD:DP:GQ:PL    0/1:108,106:215:99:2921,0,3184
11    71548520    rs12285495    A    T    2825.49    PASS    AB=0.498;AC=1;AF=0.50;AN=2;BaseQRankSum=6.836;DB;DP=228;Dels=0.0;FS=0.499;HRun=1;HaplotypeScore=3.4669;MQ=52.2;MQ0=1;MQRankSum=-10.479;QD=12.39;ReadPosRankSum=-0.7;SNPEFF_AMINO_ACID_CHANGE=H45L;SNPEFF_CODON_CHANGE=cAt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71548445_71548608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB108B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328698    GT:AD:DP:GQ:PL    0/1:113,114:228:99:2855,0,3466
11    71548544    rs7120658    A    G    2587.04    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.161;DB;DP=238;Dels=0.0;FS=2.312;HRun=0;HaplotypeScore=3.4612;MQ=50.43;MQ0=3;MQRankSum=-11.751;QD=10.87;ReadPosRankSum=0.099;SNPEFF_AMINO_ACID_CHANGE=Q53R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_71548445_71548608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB108B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328698    GT:AD:DP:GQ:PL    0/1:124,113:238:99:2617,0,3709
11    71595301    rs183316836    A    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-849H4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528511    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    71604727    rs526054    C    T    2898.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=46.01;MQ0=2;QD=30.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-849H4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528511    GT:AD:DP:GQ:PL    1/1:0,95:95:99:2931,226,0
11    71614696    rs111912224    CT    C    201.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=24;FS=0.0;HRun=13;HaplotypeScore=128.3292;IndelType=D;MQ=55.33;MQ0=0;MQRankSum=1.273;QD=8.41;ReadPosRankSum=1.504;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-849H4.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528511    GT:AD:DP:GQ:PL    1/1:10,11:24:27.58:244,28,0
11    71668362    rs3216157    CT    C    1398.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=2;HaplotypeScore=114.9548;IndelType=D;MQ=59.51;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF121;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361756    GT:AD:DP:GQ:PL    1/1:1,37:38:99:1440,111,0
11    71701523    rs2276384    G    A    582.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF121;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393711    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:615,45,0
11    71707465    rs1055452    T    C    159.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF121;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490867    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:192,15,0
11    71707489    rs3829215    T    C    171.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF121;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490867    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:204,18,0
11    71712175    rs1892919    G    A    428.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414358    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:462,36,0
11    71715215    rs2845857    C    G    1043.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.37;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260049    GT:AD:DP:GQ:PL    1/1:0,30:30:87.25:1077,87,0
11    71715218    rs2852365    T    C    1060.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.14;MQ0=0;QD=32.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260049    GT:AD:DP:GQ:PL    1/1:0,33:33:90.23:1093,90,0
11    71716098    rs2155146    A    C    107    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260049    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
11    71719619    rs2155145    G    T    689.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343898    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:723,54,0
11    71720616    rs4477459    T    C    75.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL18BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343898    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
11    71727422    rs1057992    A    C    3011.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.33;MQ0=0;QD=31.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534987    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3045,235,0
11    71728543    rs34393610    G    GA    234.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=110.1939;IndelType=I;MQ=57.87;MQ0=0;MQRankSum=-0.791;QD=19.55;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534971    GT:AD:DP:GQ:PL    1/1:3,9:12:8.57:276,9,0
11    71728908    rs11278712    AGTCAAC    A    1486.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=172.8078;IndelType=D;MQ=37.12;MQ0=0;QD=59.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534971    GT:AD:DP:GQ:PL    1/1:2,23:25:69.20:1529,69,0
11    71729656    rs949325    A    G    242.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366394    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
11    71730306    rs949326    C    T    254.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366394    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
11    71730715    rs2298456    T    A    753.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366394    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:786,60,0
11    71733519    rs10128658    C    T    1069.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366394    GT:AD:DP:GQ:PL    1/1:0,34:34:87.26:1102,87,0
11    71734211    rs2298457    T    C    2176.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535111    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2210,163,0
11    71740378    rs35948003    A    AAC    453.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=31.5209;IndelType=I;MQ=57.39;MQ0=0;QD=50.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351960    GT:AD:DP:GQ:PL    1/1:0,8:9:27.09:495,27,0
11    71789252    rs607446    G    A    35.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351960    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
11    71805893    rs74366316    T    A    314.89    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.644;DB;DP=32;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.5784;MQ=58.55;MQ0=0;MQRankSum=0.46;QD=9.84;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMTOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278671    GT:AD:DP:GQ:PL    0/1:16,14:32:99:345,0,486
11    71883540    rs633738    G    A    2793.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.94;MQ0=0;QD=27.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-807H22.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538934    GT:AD:DP:GQ:PL    1/1:0,102:102:99:2827,220,0
11    71932120    rs2508202    G    C    146.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOLR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541003    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
11    71939708    .    C    G    217    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=2.52;QD=19.73;ReadPosRankSum=1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540973    GT:AD:DP:GQ:PL    0/1:4,7:11:99:247,0,122
11    72289176    rs379276    C    G    651.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420501    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:685,54,0
11    72289291    rs1135029    T    C    1810.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=A611;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_72289277_72289383;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376450    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1844,141,0
11    72290199    rs11605051    G    A    417.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441209    GT:AD:DP:GQ:PL    1/1:1,13:14:36.11:451,36,0
11    72291883    rs644698    C    A    348.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:382,30,0
11    72291927    rs577536    T    C    581.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:1,18:19:45.15:614,45,0
11    72292167    rs3781939    G    T    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
11    72292176    rs7108477    C    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
11    72292353    rs75787002    G    GA    542.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=34.5208;IndelType=I;MQ=58.2;MQ0=0;QD=41.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:1,12:13:39.13:584,39,0
11    72292860    rs376724    C    T    365.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:398,30,0
11    72293039    rs379638    G    A    557.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:590,45,0
11    72293079    rs414178    A    G    157.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.3;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_72292921_72293413;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420501    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
11    72293602    rs4944557    A    G    1100.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=D10;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_72293488_72293610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542223    GT:AD:DP:GQ:PL    1/1:0,35:35:87.27:1134,87,0
11    72293802    rs402250    C    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
11    72294714    rs408269    C    T    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.36;MQ0=0;QD=12.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475807    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
11    72295502    rs366711    T    C    190.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.09;SNPEFF_AMINO_ACID_CHANGE=S6G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_72295245_72295517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441209    GT:AD:DP:GQ:PL    1/1:0,10:10:18.05:224,18,0
11    72295906    rs452228    A    G    1289.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=26.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334456    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1323,114,0
11    72296039    rs907850    G    T    812.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334456    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:845,63,0
11    72296700    rs424234    C    T    203.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485058    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
11    72326210    rs572421    A    G    334.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=57.87;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334456    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:368,27,0
11    72396800    rs12802369    A    G    584.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541623    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:618,48,0
11    72396990    rs12805218    G    A    517.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541623    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:551,42,0
11    72399607    rs2306609    G    A    404.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=33.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543868    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:437,33,0
11    72404958    rs12276972    A    C    128.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427971    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
11    72406297    rs35250343    C    A    165.03    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=15.0;ReadPosRankSum=1.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340247    GT:AD:DP:GQ:PL    0/1:5,6:11:99:195,0,175
11    72407770    rs2306612    G    C    77.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.44;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340247    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:107,0,69
11    72408657    rs2291289    C    T    963.31    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=67;Dels=0.0;FS=0.918;HRun=0;HaplotypeScore=1.5226;MQ=59.03;MQ0=0;MQRankSum=0.578;QD=14.38;ReadPosRankSum=1.786;SNPEFF_AMINO_ACID_CHANGE=L213;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_72408643_72408694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427971    GT:AD:DP:GQ:PL    0/1:32,35:67:99:993,0,832
11    72409159    rs7121351    A    G    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.65;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340247    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:69,0,65
11    72412548    rs11235573    T    C    182.35    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=15.2;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334211    GT:AD:DP:GQ:PL    0/1:5,6:12:99:212,0,123
11    72412675    rs11235574    A    G    1149.01    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.696;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.12;MQ0=0;MQRankSum=-0.004;QD=11.49;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334211    GT:AD:DP:GQ:PL    0/1:55,45:100:99:1179,0,1704
11    72414189    rs3765105    G    A    68.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.49;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334211    GT:AD:DP:GQ:PL    0/1:3,3:6:98.96:99,0,109
11    72528973    rs891655    C    T    234.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451353    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:267,21,0
11    72533711    rs4944806    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451353    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    72538141    rs3862793    T    C    249.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537143    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
11    72540225    rs891657    G    T    171.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG16L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541999    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
11    72554407    rs3217361    A    AGGG    3051.63    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.566;DB;DP=92;FS=5.203;HRun=0;HaplotypeScore=292.0578;IndelType=I;MQ=57.76;MQ0=0;MQRankSum=-0.755;QD=33.17;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311172    GT:AD:DP:GQ:PL    0/1:48,43:92:99:3091,0,2172
11    72561138    rs12289752    C    T    65.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.03;MQ0=0;MQRankSum=0.361;QD=7.27;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311172    GT:AD:DP:GQ:PL    0/1:5,4:9:90.97:95,0,91
11    72598704    rs7129851    G    A    1416.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311172    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1449,120,0
11    72601276    rs12808517    C    T    34.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.38;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311172    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:64,0,28
11    72794694    rs11607724    C    T    1073.90    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.237;DB;DP=71;Dels=0.0;FS=2.604;HRun=0;HaplotypeScore=0.8667;MQ=59.35;MQ0=0;MQRankSum=1.604;QD=15.13;ReadPosRankSum=-1.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311172    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1104,0,841
11    72945341    rs2511241    C    T    1643.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_AMINO_ACID_CHANGE=P46L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_72945067_72947397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311131    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1677,126,0
11    72946020    rs1783596    C    T    1066.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.32;MQ0=0;QD=31.38;SNPEFF_AMINO_ACID_CHANGE=R272;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_72945067_72947397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311131    GT:AD:DP:GQ:PL    1/1:0,34:34:87.24:1100,87,0
11    72946204    rs1626154    C    T    750.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.96;DB;DP=68;Dels=0.0;FS=2.863;HRun=0;HaplotypeScore=6.8695;MQ=56.94;MQ0=0;MQRankSum=0.565;QD=11.04;ReadPosRankSum=-0.404;SNPEFF_AMINO_ACID_CHANGE=R334C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_72945067_72947397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311131    GT:AD:DP:GQ:PL    0/1:34,34:68:99:781,0,645
11    73345882    rs10793063    T    C    1512.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.92;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1546,111,0
11    73346057    rs111499346    A    G    173.43    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DB;DP=23;Dels=0.0;FS=5.166;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-1.837;QD=7.54;ReadPosRankSum=-1.904;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,7:23:99:203,0,588
11    73362766    rs670811    C    T    279.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=27.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536527    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:312,24,0
11    73362985    rs113889337    A    G    446.11    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=29;Dels=0.0;FS=4.601;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.253;QD=15.38;ReadPosRankSum=-2.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536527    GT:AD:DP:GQ:PL    0/1:15,14:29:99:476,0,481
11    73366697    rs2008734    G    A    195.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536527    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:229,18,0
11    73390772    rs78075856    GAA    G    2945.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.0;HRun=3;HaplotypeScore=232.3893;IndelType=D;MQ=61.06;MQ0=0;QD=43.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310653    GT:AD:DP:GQ:PL    1/1:1,67:68:99:2987,199,0
11    73441772    rs2037709    A    C    2566.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310653    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2600,205,0
11    73675810    rs34780089    CTGTG    C    238.46    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=82.8067;IndelType=D;MQ=59.46;MQ0=0;MQRankSum=-0.762;QD=19.87;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535730    GT:AD:DP:GQ:PL    0/1:5,7:12:48.13:277,0,48
11    73680128    rs72982970    T    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339764    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
11    73680776    rs72982971    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310473    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    73681090    rs2306819    C    T    1506.37    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DB;DP=95;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=54.95;MQ0=0;MQRankSum=-0.004;QD=15.86;ReadPosRankSum=-0.108;SNPEFF_AMINO_ACID_CHANGE=F119;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_73681006_73681275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537753    GT:AD:DP:GQ:PL    0/1:36,59:95:99:1536,0,840
11    73681135    rs72982975    G    A    1263.53    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.636;DB;DP=83;Dels=0.0;FS=0.869;HRun=0;HaplotypeScore=2.0234;MQ=54.18;MQ0=0;MQRankSum=0.215;QD=15.22;ReadPosRankSum=-0.45;SNPEFF_AMINO_ACID_CHANGE=M134I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_73681006_73681275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537753    GT:AD:DP:GQ:PL    0/1:36,47:83:99:1294,0,1026
11    73689104    rs660339    G    A    476.23    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=58.5;MQ0=0;MQRankSum=-0.691;QD=17.01;ReadPosRankSum=-1.244;SNPEFF_AMINO_ACID_CHANGE=A28V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_73688931_73689186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544615    GT:AD:DP:GQ:PL    0/1:13,15:28:99:506,0,390
11    73712708    rs3837411    G    GTC    260.31    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.848;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=112.84;IndelType=I;MQ=55.45;MQ0=0;MQRankSum=0.652;QD=12.4;ReadPosRankSum=-0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426995    GT:AD:DP:GQ:PL    0/1:16,5:21:54.50:299,0,54
11    73712720    rs35517703    C    CT    176.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=101.1154;IndelType=I;MQ=53.95;MQ0=0;MQRankSum=-1.24;QD=11.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426995    GT:AD:DP:GQ:PL    1/1:9,7:16:11.74:218,12,0
11    73712859    rs1685356    T    C    89.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=22.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426995    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
11    73715134    rs1726743    C    T    131.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544614    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
11    73715542    rs2075577    G    A    810.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=Y210;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_73715529_73715630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314032    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:844,63,0
11    73715666    rs2734828    G    A    542.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544614    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:576,42,0
11    73785326    rs4453265    T    C    608.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_AMINO_ACID_CHANGE=V1622;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_73785298_73785645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2CD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313681    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:642,48,0
11    73789777    rs1726735    T    G    783.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2CD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313663    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:817,60,0
11    73796608    rs1095424    T    C    427.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2CD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313663    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:461,33,0
11    73796917    rs826058    C    T    533.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_AMINO_ACID_CHANGE=R1219Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_73796663_73796931;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2CD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313663    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:566,42,0
11    73801662    rs1790399    G    C    382.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2CD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313663    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:416,30,0
11    73803398    rs1790400    C    T    1046.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2CD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313663    GT:AD:DP:GQ:PL    1/1:0,29:29:84.26:1080,84,0
11    73833957    .    C    CTGTCTGGCAAGTGA    3739.68    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=187.5476;IndelType=I;MQ=32.5;MQ0=0;QD=169.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C2CD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289350    GT:AD:DP:GQ:PL    1/1:13,7:22:63.21:3740,63,0
11    73963047    rs75627623    G    A    316.29    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.819;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7356;MQ=59.2;MQ0=0;MQRankSum=0.199;QD=10.91;ReadPosRankSum=-0.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535205    GT:AD:DP:GQ:PL    0/1:17,12:29:99:346,0,625
11    73984393    rs513683    C    G    35.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=P4HA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331597    GT:AD:DP:GQ:PL    1/1:0,2:2:6:66,6,0
11    73988410    rs556134    A    T    83.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=P4HA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331597    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:116,9,0
11    73996674    rs578057    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=P4HA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331597    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    74054175    rs75415490    A    G    475.44    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.661;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.598;QD=20.67;ReadPosRankSum=0.661;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298198    GT:AD:DP:GQ:PL    0/1:9,14:23:99:505,0,301
11    74109342    rs904155    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGM2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538908    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    74203308    rs586088    T    A    86.72    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=2.095;DB;DP=18;Dels=0.0;FS=2.846;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.396;QD=4.82;ReadPosRankSum=1.302;SNPEFF_AMINO_ACID_CHANGE=T190S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74202888_74203409;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310109    GT:AD:DP:GQ:PL    0/1:14,4:18:99:117,0,425
11    74303841    rs2298572    T    C    379.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263681    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:413,33,0
11    74303850    rs2298573    T    C    50.19    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.35;MQ0=0;MQRankSum=1.109;QD=3.86;ReadPosRankSum=-0.74;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_74303650_74304082;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527458    GT:AD:DP:GQ:PL    0/1:10,3:13:80.19:80,0,314
11    74329615    rs4944052    T    C    1393.91    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=88;Dels=0.0;FS=5.481;HRun=3;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.874;QD=15.84;ReadPosRankSum=-0.779;SNPEFF_AMINO_ACID_CHANGE=P103;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74329582_74329849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527458    GT:AD:DP:GQ:PL    0/1:38,50:88:99:1424,0,1185
11    74330980    rs10501417    A    G    569.01    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.08;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.476;QD=14.23;ReadPosRankSum=1.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528481    GT:AD:DP:GQ:PL    0/1:22,18:40:99:599,0,761
11    74336318    rs3832771    G    GT    284.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=3;HaplotypeScore=14.8114;IndelType=I;MQ=62.65;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263681    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
11    74340196    rs2298792    A    G    1137.16    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.817;DB;DP=67;Dels=0.0;FS=1.891;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-1.512;QD=16.72;ReadPosRankSum=-0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538052    GT:AD:DP:GQ:PL    0/1:30,37:67:99:1167,0,969
11    74347434    rs4944920    G    C    553.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263681    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:586,45,0
11    74351324    rs12282266    G    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263681    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    74363844    rs7924706    T    A    84.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=8.42;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,4:10:99:114,0,158
11    74364038    rs7924701    A    G    1515.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1549,126,0
11    74364193    rs7937753    G    A    798.99    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=52;Dels=0.0;FS=3.546;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.083;QD=15.37;ReadPosRankSum=1.349;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,28:52:99:829,0,696
11    74407676    rs3819242    C    T    214.45    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6229;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=19.5;ReadPosRankSum=-1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534159    GT:AD:DP:GQ:PL    0/1:3,8:11:71.16:244,0,71
11    74408106    rs7131683    G    A    126.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534159    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
11    74408384    rs10751240    C    T    582.23    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.941;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8606;MQ=60.0;MQ0=0;MQRankSum=0.014;QD=14.93;ReadPosRankSum=-0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534159    GT:AD:DP:GQ:PL    0/1:19,20:39:99:612,0,644
11    74419357    rs1944937    C    T    41.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=8.26;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=Q172;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74419347_74419440;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRDL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263671    GT:AD:DP:GQ:PL    0/1:2,3:5:70.42:71,0,70
11    74419378    rs7948433    C    T    79.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.2;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=P165;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74419347_74419440;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRDL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263671    GT:AD:DP:GQ:PL    0/1:3,3:6:63.16:109,0,63
11    74429634    rs182648767    G    A    120.36    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.07;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263671    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:150,0,27
11    74429987    rs12417156    G    A    191.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.423;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.733;QD=9.6;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRDL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263671    GT:AD:DP:GQ:PL    0/1:12,8:20:99:222,0,376
11    74555056    rs3814726    C    T    524.57    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.695;QD=10.09;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF169;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299563    GT:AD:DP:GQ:PL    0/1:30,22:52:99:555,0,957
11    74559021    rs571446    A    G    72.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XRRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529926    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
11    74559446    rs4944960    G    C    493.17    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.606;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.152;QD=11.74;ReadPosRankSum=0.632;SNPEFF_AMINO_ACID_CHANGE=T198R;SNPEFF_CODON_CHANGE=aCg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74559160_74559507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XRRA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321448    GT:AD:DP:GQ:PL    0/1:23,19:42:99:523,0,691
11    74559481    rs4944961    C    T    378.04    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.56;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.211;QD=12.19;ReadPosRankSum=-1.489;SNPEFF_AMINO_ACID_CHANGE=P186;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74559160_74559507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XRRA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321448    GT:AD:DP:GQ:PL    0/1:17,14:31:99:408,0,414
11    74562378    rs7928381    C    T    175.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.447;QD=17.51;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XRRA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321448    GT:AD:DP:GQ:PL    0/1:4,6:10:99:205,0,113
11    74563077    rs2304683    G    A    1487.48    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=107;Dels=0.0;FS=3.601;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.394;QD=13.9;ReadPosRankSum=-0.638;SNPEFF_AMINO_ACID_CHANGE=C124;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74563034_74563127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=XRRA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321448    GT:AD:DP:GQ:PL    0/1:54,53:107:99:1517,0,1527
11    74675896    rs9787775    T    G    38.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=6.4;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263672    GT:AD:DP:GQ:PL    0/1:3,3:6:68.41:68,0,109
11    74676794    rs514534    G    C    3912.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9901;MQ=52.82;MQ0=0;QD=35.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPCS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527290    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3913,292,0
11    74688052    .    C    G    507.48    MQFilter40    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=1.183;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7876;MQ=22.02;MQ0=48;MQRankSum=1.781;QD=5.46;ReadPosRankSum=-0.632;SNPEFF_AMINO_ACID_CHANGE=L146;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74687902_74688201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPCS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530257    GT:AD:DP:GQ:PL    0/1:63,30:93:99:537,0,684
11    74705602    rs7115499    G    A    2831.30    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=5.659;DB;DP=204;Dels=0.0;FS=6.078;HRun=0;HaplotypeScore=5.1522;MQ=60.0;MQ0=0;MQRankSum=-1.313;QD=13.88;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=R15Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74705554_74705765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEU3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544263    GT:AD:DP:GQ:PL    0/1:104,100:204:99:2861,0,2765
11    74705696    rs544115    T    C    5956.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=S46;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74705554_74705765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEU3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544263    GT:AD:DP:GQ:PL    1/1:0,180:180:99:5957,448,0
11    74800829    rs7122948    A    G    453.82    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.936;DB;DP=34;Dels=0.0;FS=1.665;HRun=0;HaplotypeScore=0.9665;MQ=59.45;MQ0=0;MQRankSum=-0.243;QD=13.35;ReadPosRankSum=1.179;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2AT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305159    GT:AD:DP:GQ:PL    0/1:19,15:34:99:484,0,541
11    74862356    rs2851069    T    C    59.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.573;QD=6.6;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531713    GT:AD:DP:GQ:PL    0/1:6,3:9:89.38:89,0,203
11    74862391    rs1944612    A    G    498.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.18;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_74862032_74862442;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO2B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289575    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:532,39,0
11    74883559    rs78825186    G    A    1029.43    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=2.805;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.308;QD=15.6;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=R162H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74883424_74883614;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO2B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525650    GT:AD:DP:GQ:PL    0/1:29,37:66:99:1059,0,840
11    74904362    rs1621378    T    C    1545.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_AMINO_ACID_CHANGE=I137T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_74904263_74904620;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO2B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531756    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1579,114,0
11    74988021    rs34053901    G    GTCCCC    566.25    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=65.5426;IndelType=I;MQ=52.6;MQ0=0;MQRankSum=-1.936;QD=37.75;ReadPosRankSum=-1.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529280    GT:AD:DP:GQ:PL    0/1:10,5:15:99:605,0,393
11    74994077    rs631651    C    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360025    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    74995111    rs1320709    A    G    204.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360025    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
11    74995350    rs647630    C    T    610.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360025    GT:AD:DP:GQ:PL    1/1:1,20:21:48.14:643,48,0
11    75062547    rs34867163    A    G    34.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.55;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360025    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:65,0,32
11    75110680    rs7131286    C    T    229.56    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=16;Dels=0.0;FS=7.83;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=14.35;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278572    GT:AD:DP:GQ:PL    0/1:7,9:16:99:260,0,183
11    75146384    rs1043638    A    G    97.71    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9973;MQ=55.66;MQ0=0;MQRankSum=-0.365;QD=8.88;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534322    GT:AD:DP:GQ:PL    0/1:6,5:11:99:128,0,208
11    75151168    rs540269    A    G    171.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=28.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527322    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
11    75152075    rs548439    G    T    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527322    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
11    75152243    rs571353    C    T    582.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=A235T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_75152208_75152355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533805    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:616,51,0
11    75154067    rs532454    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533911    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    75160213    rs473462    G    A    127.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336898    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
11    75160575    rs518611    G    A    101.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_AMINO_ACID_CHANGE=R185;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_75160562_75160655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336898    GT:AD:DP:GQ:PL    1/1:0,6:6:12.01:134,12,0
11    75167704    rs1793410    T    C    322.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336898    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
11    75188569    rs1790149    C    T    132.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336898    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:165,15,0
11    75277628    rs584961    A    G    238.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=26.49;SNPEFF_AMINO_ACID_CHANGE=L53;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_75277512_75277726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526242    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:271,21,0
11    75277661    rs139127426    G    A    64.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.0;QD=9.27;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=T42;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_75277653_75277963;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525492    GT:AD:DP:GQ:PL    0/1:4,3:7:94.87:95,0,137
11    75277992    rs651581    C    T    275.01    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=1.613;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.028;QD=11.0;ReadPosRankSum=-0.708;SNPEFF_AMINO_ACID_CHANGE=L179;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_75277765_75278016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421448    GT:AD:DP:GQ:PL    0/1:16,9:25:99:305,0,475
11    75283253    rs9175    A    G    33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=11.0;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421448    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:63,0,28
11    75298797    rs1231128    A    G    1482.32    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.146;DB;DP=89;Dels=0.0;FS=7.024;HRun=0;HaplotypeScore=0.9998;MQ=59.74;MQ0=0;MQRankSum=1.968;QD=16.66;ReadPosRankSum=-1.237;SNPEFF_AMINO_ACID_CHANGE=D254;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_75297964_75299229;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526740    GT:AD:DP:GQ:PL    0/1:42,47:89:99:1512,0,1256
11    75378674    rs12225010    A    C    112.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.06;SNPEFF_AMINO_ACID_CHANGE=I247M;SNPEFF_CODON_CHANGE=atT/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_75378510_75380165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304771    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
11    75430950    rs650861    A    G    403.52    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.188;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=14.95;ReadPosRankSum=0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOGAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198801    GT:AD:DP:GQ:PL    0/1:10,17:27:99:434,0,321
11    75501207    rs10899123    C    G    646.06    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.444;DB;DP=45;Dels=0.0;FS=3.159;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.948;QD=14.36;ReadPosRankSum=1.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228027    GT:AD:DP:GQ:PL    0/1:19,26:45:99:676,0,592
11    75501852    rs2510635    A    G    468.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228027    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:502,39,0
11    75507234    rs12222542    A    C    653.25    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=3.725;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=59.38;MQ0=0;MQRankSum=0.536;QD=17.66;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228027    GT:AD:DP:GQ:PL    0/1:16,21:37:99:683,0,488
11    75511572    rs3060    T    C    184.97    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=2.817;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=15.41;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524706    GT:AD:DP:GQ:PL    0/1:5,7:12:99:215,0,139
11    75622983    rs61631142    G    A    715.29    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=52;Dels=0.0;FS=1.332;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.236;QD=13.76;ReadPosRankSum=-0.878;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UVRAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356136    GT:AD:DP:GQ:PL    0/1:28,24:52:99:745,0,926
11    75898329    rs11823833    C    T    123.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=11.2;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322563    GT:AD:DP:GQ:PL    0/1:6,5:11:99:153,0,179
11    75902539    rs11236648    A    G    269.91    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=60.0;MQ0=0;MQRankSum=0.692;QD=12.27;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322563    GT:AD:DP:GQ:PL    0/1:10,12:22:99:300,0,306
11    75902571    rs2508779    A    G    995.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=29.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322563    GT:AD:DP:GQ:PL    1/1:0,34:34:81.24:1028,81,0
11    75917334    rs1879633    T    C    207.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529461    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:240,18,0
11    76163151    rs4300410    T    C    64.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334736    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
11    76183924    rs4245443    A    G    935.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334736    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:968,69,0
11    76184011    rs4245444    G    A    372.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334736    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:405,30,0
11    76207633    rs10899226    G    A    442.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334736    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:475,36,0
11    76227182    rs2508740    G    A    1942.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334736    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1976,144,0
11    76234004    rs2513507    G    A    117.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334736    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
11    76239150    rs2513523    C    T    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334736    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
11    76250905    rs2508754    T    G    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C11orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334736    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
11    76370792    rs4304809    A    G    1516.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=58.48;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=P615;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76368568_76372552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260061    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1550,123,0
11    76372052    rs3740779    A    G    931.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.07;SNPEFF_AMINO_ACID_CHANGE=G195;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76368568_76372552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260061    GT:AD:DP:GQ:PL    1/1:0,29:30:75.21:965,75,0
11    76372418    rs3740778    T    C    619.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=T73;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76368568_76372552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260061    GT:AD:DP:GQ:PL    1/1:0,19:19:54.14:653,54,0
11    76372564    rs10751259    T    C    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260061    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
11    76507692    rs1149621    T    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_AMINO_ACID_CHANGE=D312E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76507050_76509178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSKU;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439807    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
11    76637651    rs4379869    G    A    1145.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_AMINO_ACID_CHANGE=V10I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76637601_76637711;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530243    GT:AD:DP:GQ:PL    1/1:0,36:36:84.28:1178,84,0
11    76637680    rs4479014    G    A    819.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_AMINO_ACID_CHANGE=K19;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76637601_76637711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530243    GT:AD:DP:GQ:PL    1/1:0,27:28:66.19:852,66,0
11    76637730    rs4604914    C    G    749.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526597    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:783,57,0
11    76637785    rs4457775    G    A    404.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526597    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:438,33,0
11    76669891    rs3740768    A    G    67.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.65;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526597    GT:AD:DP:GQ:PL    0/1:4,3:7:97.54:98,0,142
11    76687399    rs1517909    A    C    818.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526597    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:851,66,0
11    76687448    rs1517908    A    C    334.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526597    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
11    76687516    rs1517907    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526597    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    76701365    rs3824889    G    T    607.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526597    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:640,48,0
11    76701606    rs3740767    G    A    6085.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DB;DP=185;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3302;MQ=59.9;MQ0=0;MQRankSum=1.275;QD=32.72;ReadPosRankSum=-0.685;SNPEFF_AMINO_ACID_CHANGE=P100;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76701583_76701618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530243    GT:AD:DP:GQ:PL    1/1:1,184:185:99:6085,445,0
11    76701657    rs3740766    G    A    1537.30    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.579;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.79;MQ0=0;MQRankSum=0.426;QD=14.1;ReadPosRankSum=-0.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526597    GT:AD:DP:GQ:PL    0/1:59,50:109:99:1567,0,2061
11    76750406    rs12422079    A    C    247.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354301    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
11    76751584    rs11292199    CT    C    125.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=58.0568;IndelType=D;MQ=29.0;MQ0=0;QD=25.1;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_76751585_76751602;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000354301    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
11    76751603    rs11292200    CT    C    230.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=50.2722;IndelType=D;MQ=42.17;MQ0=0;QD=28.85;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_76751604_76753003;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000354301    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:273,21,0
11    76814110    rs2233549    G    A    366.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DB;DP=30;Dels=0.0;FS=3.39;HRun=0;HaplotypeScore=0.734;MQ=59.23;MQ0=0;MQRankSum=0.572;QD=12.23;ReadPosRankSum=-1.334;SNPEFF_AMINO_ACID_CHANGE=P75;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76813886_76814377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OMP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529803    GT:AD:DP:GQ:PL    0/1:18,12:30:99:397,0,555
11    76831622    rs4517554    T    C    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278559    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
11    76853783    rs1052030    T    C    284.19    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=22;Dels=0.0;FS=4.434;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.735;QD=12.92;ReadPosRankSum=-1.202;SNPEFF_AMINO_ACID_CHANGE=L15S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76853755_76853868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    0/1:9,13:22:99:314,0,268
11    76872106    .    C    T    235.21    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.979;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.979;QD=8.71;ReadPosRankSum=0.226;SNPEFF_AMINO_ACID_CHANGE=R352C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76872019_76872161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    0/1:17,10:27:99:265,0,505
11    76885779    rs2276283    G    A    536.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:570,42,0
11    76890242    rs10793239    T    C    128.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=16.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,8:8:15.02:162,15,0
11    76891308    rs3831388    T    TCTGCCAAATTATTTGG    7344.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=297.0342;IndelType=I;MQ=31.11;MQ0=0;QD=229.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:17,13:32:96.33:7345,96,0
11    76891585    rs1109163    G    A    812.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9497;MQ=55.4;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,25:26:66.19:846,66,0
11    76891661    rs1109162    A    G    202.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
11    76892368    rs3740762    C    G    71.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:104,9,0
11    76892943    rs7117606    A    G    479.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:513,42,0
11    76893280    rs76371237    A    AG    577.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=28.8584;IndelType=I;MQ=60.77;MQ0=0;QD=41.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:620,42,0
11    76893401    rs2276287    G    A    30.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,2:2:6:61,6,0
11    76893731    rs112227803    G    GA    471.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=5;HaplotypeScore=36.7481;IndelType=I;MQ=60.72;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:2,13:15:39.13:513,39,0
11    76900267    rs12792197    G    A    509.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343419    GT:AD:DP:GQ:PL    1/1:0,14:15:42.13:543,42,0
11    76901590    rs149348459    C    T    113.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=1.38;QD=19.0;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    0/1:2,4:6:48.81:144,0,49
11    76901648    rs7947922    C    G    390.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.81;MQ0=0;QD=18.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,21:21:33.10:423,33,0
11    76901927    rs2276285    C    T    866.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:900,69,0
11    76902024    rs4944148    G    A    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    76902927    rs7952285    C    T    144.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467137    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
11    76903003    rs1944034    C    G    265.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467137    GT:AD:DP:GQ:PL    1/1:0,12:12:24.07:298,24,0
11    76905604    rs1109977    G    T    456.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467137    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:489,39,0
11    76905725    rs948958    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467137    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    76908319    rs12802853    C    G    166.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
11    76908324    rs12421897    A    G    146.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:179,15,0
11    76908662    rs11237114    T    C    1301.90    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.702;DB;DP=212;Dels=0.0;FS=43.185;HRun=0;HaplotypeScore=1.399;MQ=56.87;MQ0=0;MQRankSum=-3.42;QD=6.14;ReadPosRankSum=-3.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    0/1:142,70:212:99:1332,0,4169
11    76908732    rs11237115    T    C    4041.96    PASS    AB=0.105;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.288;DB;DP=190;Dels=0.0;FS=7.58;HRun=0;HaplotypeScore=2.1375;MQ=51.44;MQ0=0;MQRankSum=0.379;QD=21.27;ReadPosRankSum=1.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    0/1:20,170:190:99:4042,0,140
11    76908791    rs4944149    A    G    1710.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.08;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,64:65:99:1744,156,0
11    76908802    rs11237116    T    C    73.36    QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.971;DB;DP=45;Dels=0.0;FS=5.01;HRun=0;HaplotypeScore=0.0;MQ=49.02;MQ0=0;MQRankSum=-3.058;QD=1.63;ReadPosRankSum=-1.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    0/1:37,8:45:99:103,0,1219
11    76908838    rs4945157    G    A    1099.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.102;QD=31.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:1,34:35:70.59:1132,71,0
11    76909427    rs3781692    A    G    96.07    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=13.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    0/1:3,4:7:68.47:126,0,68
11    76910766    rs7927472    C    T    916.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=S1461;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76910580_76910863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:949,72,0
11    76912636    rs2276288    A    T    1265.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_AMINO_ACID_CHANGE=S1542C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76912493_76912683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,41:41:96.30:1299,96,0
11    76914948    rs2276294    A    G    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
11    76916424    rs11237121    A    G    101.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:134,12,0
11    76916967    rs4945160    A    G    82.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
11    76917220    rs2276293    A    G    747.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=27.68;SNPEFF_AMINO_ACID_CHANGE=K1047;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76917142_76917247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458169    GT:AD:DP:GQ:PL    1/1:0,27:27:60.19:780,60,0
11    76918322    rs2276291    T    C    889.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,30:30:69.22:922,69,0
11    76918497    rs2276290    G    A    955.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:988,75,0
11    76919468    rs1320703    A    T    1579.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1613,120,0
11    76919478    rs948962    C    A    1802.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=36.8;SNPEFF_AMINO_ACID_CHANGE=L1096I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76919475_76919562;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458169    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1836,135,0
11    76919619    rs948961    G    A    1579.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1613,123,0
11    76919629    rs948960    C    T    1748.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1781,132,0
11    76919865    rs1320702    T    A    866.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,29:29:66.22:899,66,0
11    76920003    rs11237122    T    C    37.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341717    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
11    76922868    rs41298757    C    T    641.64    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;MQRankSum=1.218;QD=10.18;ReadPosRankSum=1.752;SNPEFF_AMINO_ACID_CHANGE=S1222;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76922866_76922982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458169    GT:AD:DP:GQ:PL    0/1:41,22:63:99:672,0,1238
11    76922946    rs11237123    G    A    2271.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.496;MQ=59.39;MQ0=0;MQRankSum=1.579;QD=33.4;ReadPosRankSum=-0.56;SNPEFF_AMINO_ACID_CHANGE=K1248;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76922866_76922982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458169    GT:AD:DP:GQ:PL    1/1:1,67:68:99:2304,175,0
11    76923017    rs3819170    G    A    1784.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.81;MQ0=0;QD=32.45;SNPEFF_AMINO_ACID_CHANGE=G745E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76922866_76923315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544424    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1818,138,0
11    76924130    rs2276289    A    T    584.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=36.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315938    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:618,48,0
11    76925040    rs883224    G    A    2555.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=32.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315938    GT:AD:DP:GQ:PL    1/1:1,76:78:99:2589,202,0
11    76925075    rs948959    G    T    1590.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=7.9548;MQ=59.49;MQ0=0;QD=35.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315938    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1624,120,0
11    76928025    rs12363944    A    G    192.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_AMINO_ACID_CHANGE=V610A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76927603_76928313;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376217    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:226,18,0
11    76928149    rs2282576    A    G    1162.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.18;SNPEFF_AMINO_ACID_CHANGE=L569;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76927603_76928313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376217    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1195,90,0
11    76938695    rs12366261    T    C    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315938    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    76944178    rs17751194    G    A    481.67    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.659;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.188;QD=17.2;ReadPosRankSum=-0.094;SNPEFF_AMINO_ACID_CHANGE=T427;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_76944070_76944217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315938    GT:AD:DP:GQ:PL    0/1:11,17:28:99:512,0,292
11    76944422    rs12361757    G    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315938    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    76954898    rs7104577    A    G    1568.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315938    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1602,117,0
11    76979465    rs1618188    A    C    2327.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=33.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527489    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2360,184,0
11    76979889    rs1621624    T    C    3026.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527489    GT:AD:DP:GQ:PL    1/1:0,93:94:99:3060,241,0
11    76979900    rs1613357    C    G    3661.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.78;MQ0=0;QD=34.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527489    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3661,271,0
11    76980743    rs1620915    T    C    87.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527489    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
11    76987421    rs1793488    T    C    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315938    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
11    77051820    rs51500    C    T    5807.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278568    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5808,439,0
11    77090037    rs561153    T    C    258.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524847    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
11    77090211    rs562939    T    C    4169.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.48;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5783;MQ=59.24;MQ0=0;MQRankSum=1.325;QD=34.18;ReadPosRankSum=-0.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524847    GT:AD:DP:GQ:PL    1/1:1,121:122:99:4170,270,0
11    77314503    rs2032395    A    G    527.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=32;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.886;QD=16.47;ReadPosRankSum=1.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AQP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313578    GT:AD:DP:GQ:PL    0/1:16,16:32:99:557,0,509
11    77335982    rs2013296    C    A    1455.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLNS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263309    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1488,138,0
11    77341135    rs11237249    G    A    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLNS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263309    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
11    77348951    rs148672055    T    C    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CLNS1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263309    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
11    77389020    rs12286317    T    C    371.99    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.07;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.642;QD=10.94;ReadPosRankSum=-0.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308488    GT:AD:DP:GQ:PL    0/1:20,14:34:99:402,0,710
11    77389238    rs10567840    CTT    C    132.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;DB;DP=38;FS=0.0;HRun=18;HaplotypeScore=404.6781;IndelType=D;MQ=48.0;MQ0=0;MQRankSum=1.448;QD=3.5;ReadPosRankSum=1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308488    GT:AD:DP:GQ:PL    1/1:17,13:38:27.63:175,28,0
11    77409832    rs10899399    C    T    219.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.504;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=10.98;ReadPosRankSum=-0.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528095    GT:AD:DP:GQ:PL    0/1:12,8:20:99:250,0,418
11    77412851    rs7950873    A    G    952.01    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.697;DB;DP=71;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.5221;MQ=59.41;MQ0=0;MQRankSum=-0.362;QD=13.41;ReadPosRankSum=0.27;SNPEFF_AMINO_ACID_CHANGE=S223P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_77411766_77414578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000480887    GT:AD:DP:GQ:PL    0/1:35,36:71:99:982,0,1191
11    77553638    rs585721    T    C    516.94    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.79;DB;DP=41;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.807;QD=12.61;ReadPosRankSum=-1.26;SNPEFF_AMINO_ACID_CHANGE=G32;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_77553525_77553674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304716    GT:AD:DP:GQ:PL    0/1:22,19:41:99:547,0,722
11    77580995    rs667213    G    A    135.16    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=11.26;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304716    GT:AD:DP:GQ:PL    0/1:7,5:12:99:165,0,229
11    77583376    rs588217    G    A    157.44    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.375;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.126;QD=7.16;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304716    GT:AD:DP:GQ:PL    0/1:14,8:22:99:187,0,406
11    77583476    rs668701    G    A    182.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.23;ReadPosRankSum=-1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393427    GT:AD:DP:GQ:PL    0/1:4,6:10:99:212,0,131
11    77587973    rs616354    T    C    1328.31    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=104;Dels=0.0;FS=1.695;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=0.34;QD=12.77;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393427    GT:AD:DP:GQ:PL    0/1:51,53:104:99:1358,0,1572
11    77602673    rs670090    A    G    265.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.56;MQ0=0;MQRankSum=0.638;QD=10.62;ReadPosRankSum=0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304716    GT:AD:DP:GQ:PL    0/1:15,10:25:99:295,0,497
11    77603072    rs682324    C    T    159.11    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.31;MQ0=2;MQRankSum=-0.572;QD=15.91;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304716    GT:AD:DP:GQ:PL    0/1:4,6:10:54.52:189,0,55
11    77605501    rs1793336    T    C    221.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=27.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304716    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:255,21,0
11    77614770    rs2276349    T    G    158.15    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=22.59;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304716    GT:AD:DP:GQ:PL    0/1:2,5:7:61.39:188,0,61
11    77635882    rs7119720    A    C    202.83    MQFilter40    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=0.129;DB;DP=37;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=1.7262;MQ=30.38;MQ0=10;MQRankSum=1.414;QD=5.48;ReadPosRankSum=0.129;SNPEFF_AMINO_ACID_CHANGE=V327;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_77635796_77635938;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    0/1:24,13:37:99:233,0,496
11    77639466    rs11607043    A    G    123.26    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=27;Dels=0.0;FS=2.793;HRun=1;HaplotypeScore=0.0;MQ=45.12;MQ0=3;MQRankSum=-3.46;QD=4.57;ReadPosRankSum=0.031;SNPEFF_AMINO_ACID_CHANGE=S282;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_77639388_77639593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    0/1:16,11:27:99:153,0,579
11    77639511    rs11607479    T    A    98.07    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.81;MQ0=2;MQRankSum=-2.062;QD=5.77;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=L267;SNPEFF_CODON_CHANGE=ctA/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_77639388_77639593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    0/1:10,7:17:99:128,0,266
11    77652131    rs1790249    A    G    602.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.87;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:635,48,0
11    77652420    rs112337042    C    T    96.92    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.25;MQ0=1;MQRankSum=0.929;QD=7.46;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    0/1:9,4:13:99:127,0,255
11    77669985    rs4123593    A    G    123.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.84;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
11    77671281    rs12796422    A    G    299.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.945;QD=14.99;ReadPosRankSum=-0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    0/1:10,10:20:99:330,0,337
11    77671544    rs2305317    T    C    123.42    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.652;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.295;QD=7.71;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    0/1:9,7:16:99:153,0,340
11    77671868    rs7929510    C    T    266.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:300,24,0
11    77672189    rs11370501    T    TA    269.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.18;DB;DP=49;FS=0.0;HRun=17;HaplotypeScore=487.609;IndelType=I;MQ=47.42;MQ0=0;MQRankSum=-0.659;QD=5.5;ReadPosRankSum=-0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354849    GT:AD:DP:GQ:PL    1/1:32,9:49:28.60:311,29,0
11    77702033    rs2276441    T    A    377.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527522    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
11    77702484    rs17752458    G    C    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.86;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=INTS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527522    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,112
11    77734209    rs11237362    T    C    104.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.281;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=7.49;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=P29;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_77734206_77734340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353172    GT:AD:DP:GQ:PL    0/1:7,7:14:99:135,0,243
11    77775466    rs545869    C    G    76.06    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=10.87;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281031    GT:AD:DP:GQ:PL    0/1:3,4:7:99:106,0,106
11    77781173    rs689195    T    C    40.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=5.85;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528164    GT:AD:DP:GQ:PL    0/1:4,3:7:70.98:71,0,144
11    77784034    rs192918394    C    T    513.02    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.31;QD=13.15;ReadPosRankSum=-0.044;SNPEFF_AMINO_ACID_CHANGE=S107N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_77783910_77784187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528164    GT:AD:DP:GQ:PL    0/1:22,16:39:99:543,0,760
11    77784380    rs10751280    A    G    72.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.42;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281030    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:102,0,67
11    77811990    rs1263505    T    C    2163.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376156    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2196,160,0
11    77820670    rs1783515    T    C    616.59    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.02;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=18.14;ReadPosRankSum=-0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525755    GT:AD:DP:GQ:PL    0/1:13,21:34:99:647,0,427
11    77820673    rs1789032    T    C    554.69    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.703;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=16.81;ReadPosRankSum=0.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525755    GT:AD:DP:GQ:PL    0/1:13,20:33:99:585,0,436
11    77823557    rs624350    G    A    157.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=13.09;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525755    GT:AD:DP:GQ:PL    0/1:6,6:12:99:187,0,208
11    77824745    rs570219    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527099    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
11    77824907    rs111652232    G    GA    192.53    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=44;FS=10.05;HRun=17;HaplotypeScore=326.4144;IndelType=I;MQ=51.21;MQ0=0;MQRankSum=-0.828;QD=4.38;ReadPosRankSum=-2.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527099    GT:AD:DP:GQ:PL    0/1:25,10:44:51.13:232,0,51
11    77825064    rs572693    A    G    383.20    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=31;Dels=0.0;FS=6.495;HRun=2;HaplotypeScore=0.9578;MQ=53.07;MQ0=0;MQRankSum=0.539;QD=12.36;ReadPosRankSum=-1.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527099    GT:AD:DP:GQ:PL    0/1:15,16:31:99:413,0,520
11    77825275    rs10899440    A    G    277.11    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.979;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=58.45;MQ0=0;MQRankSum=1.632;QD=18.47;ReadPosRankSum=0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527099    GT:AD:DP:GQ:PL    0/1:4,11:15:84.33:307,0,84
11    77825508    rs678277    A    G    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.68;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299626    GT:AD:DP:GQ:PL    0/1:3,2:5:68.41:68,0,111
11    77832076    rs518624    T    A    1143.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525761    GT:AD:DP:GQ:PL    1/1:0,30:30:90.28:1176,90,0
11    77834994    rs498278    G    A    515.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=34;Dels=0.0;FS=2.21;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.207;QD=15.17;ReadPosRankSum=-0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525761    GT:AD:DP:GQ:PL    0/1:17,17:34:99:546,0,503
11    77838373    rs67168175    TA    T    461.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=11;HaplotypeScore=73.0114;IndelType=D;MQ=60.93;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299626    GT:AD:DP:GQ:PL    1/1:1,20:23:64:504,64,0
11    77884782    rs230661    C    T    965.93    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.947;DB;DP=83;Dels=0.0;FS=10.363;HRun=1;HaplotypeScore=0.9992;MQ=59.5;MQ0=0;MQRankSum=1.067;QD=11.64;ReadPosRankSum=2.292;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525447    GT:AD:DP:GQ:PL    0/1:47,36:83:99:996,0,1500
11    77921527    rs2512526    G    C    2591.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=A444P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_77920494_77921790;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530267    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2624,205,0
11    78189558    rs4944202    T    C    252.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=16;Dels=0.0;FS=7.83;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=2.848;QD=15.78;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281038    GT:AD:DP:GQ:PL    0/1:8,8:16:99:282,0,204
11    78204073    rs66546995    CACAGAT    C    986.06    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=4.636;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=283.9992;IndelType=D;MQ=52.12;MQ0=0;MQRankSum=-4.083;QD=20.98;ReadPosRankSum=1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281038    GT:AD:DP:GQ:PL    0/1:31,16:47:99:1025,0,2748
11    78204299    rs140940704    T    TA    318.56    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.936;DB;DP=35;FS=0.0;HRun=3;HaplotypeScore=80.1999;IndelType=I;MQ=60.27;MQ0=0;MQRankSum=0.357;QD=9.1;ReadPosRankSum=-0.873;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281038    GT:AD:DP:GQ:PL    0/1:24,11:35:99:358,0,660
11    78204380    rs4474465    C    T    145.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=-0.198;QD=20.78;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281038    GT:AD:DP:GQ:PL    0/1:2,5:7:58.14:175,0,58
11    78204406    rs4474466    C    T    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281038    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
11    78277277    rs10751296    A    G    1670.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=Y138;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_78277178_78277318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281038    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1703,129,0
11    78279790    rs10501429    T    G    2262.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_AMINO_ACID_CHANGE=N87T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_78279678_78279798;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281038    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2295,169,0
11    78282632    rs4945300    T    C    82.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281038    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
11    78372536    rs2277277    G    A    576.70    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=37;Dels=0.0;FS=3.655;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.449;QD=15.59;ReadPosRankSum=-0.108;SNPEFF_AMINO_ACID_CHANGE=L2503;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_78372494_78372636;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:15,22:37:99:607,0,506
11    78381678    rs7938204    C    T    328.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.46;DB;DP=42;Dels=0.0;FS=2.788;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.191;QD=7.83;ReadPosRankSum=0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:28,14:42:99:359,0,820
11    78382932    rs7106047    A    C    69.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.52;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:2,4:6:67.94:99,0,68
11    78437182    rs689369    G    A    3359.08    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=4.749;DB;DP=227;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3696;MQ=59.49;MQ0=0;MQRankSum=-0.734;QD=14.8;ReadPosRankSum=-0.279;SNPEFF_AMINO_ACID_CHANGE=D1164;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_78437124_78437267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:115,111:227:99:3359,0,3194
11    78440736    rs512004    G    C    1425.55    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=1.475;DB;DP=112;Dels=0.0;FS=2.594;HRun=2;HaplotypeScore=1.367;MQ=59.79;MQ0=0;MQRankSum=1.007;QD=12.73;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:59,53:112:99:1456,0,1587
11    78498022    rs11237621    C    T    75.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=9;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-2.017;QD=8.4;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=P762;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_78497943_78498128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:4,5:9:93.29:106,0,93
11    78516320    .    T    TCCTCCACCCACCCTTC    915.50    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DP=9;FS=0.0;HRun=0;HaplotypeScore=128.5926;IndelType=I;MQ=43.56;MQ0=0;MQRankSum=0.751;QD=101.72;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:1,4:9:23.06:955,0,23
11    78573894    rs77880351    C    T    286.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.637;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.273;QD=17.92;ReadPosRankSum=-1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:4,12:16:99:317,0,116
11    78602150    rs613823    C    T    171.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
11    78780837    rs61745036    G    A    75.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.12;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=D51;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_78780767_78781054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:2,3:5:56.19:106,0,56
11    78807960    rs10655373    T    TGC    680.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=224.3488;IndelType=I;MQ=62.12;MQ0=0;QD=16.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    1/1:20,21:41:61.82:722,62,0
11    78807975    rs6592824    A    G    32.50    QDFilter2    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=26;Dels=0.0;FS=2.205;HRun=0;HaplotypeScore=3.8318;MQ=62.91;MQ0=0;MQRankSum=0.205;QD=1.25;ReadPosRankSum=-0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278550    GT:AD:DP:GQ:PL    0/1:11,15:26:62.49:62,0,132
11    79403524    rs4945364    A    G    325.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.945;QD=16.25;ReadPosRankSum=1.247;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AP000478.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408624    GT:AD:DP:GQ:PL    0/1:10,10:20:99:355,0,310
11    82443417    rs3780    C    T    110.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.78;ReadPosRankSum=-0.922;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM181B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329203    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,146
11    82443672    rs6592081    C    G    102.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.59;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=R367P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_82443053_82444906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM181B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329203    GT:AD:DP:GQ:PL    0/1:3,4:7:55.77:132,0,56
11    82533628    rs586607    T    C    446.40    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=48;Dels=0.0;FS=3.855;HRun=0;HaplotypeScore=1.5362;MQ=59.03;MQ0=0;MQRankSum=-0.822;QD=9.3;ReadPosRankSum=0.169;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313010    GT:AD:DP:GQ:PL    0/1:29,19:48:99:476,0,987
11    82559984    rs7101888    T    C    253.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527444    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
11    82560312    rs10792653    T    G    1018.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528082    GT:AD:DP:GQ:PL    1/1:0,26:26:78.23:1051,78,0
11    82560810    rs10736756    G    A    299.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=37.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528082    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
11    82560858    rs10736757    A    G    688.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=34.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528082    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:721,54,0
11    82561339    rs13306597    G    A    496.45    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.692;DB;DP=35;Dels=0.0;FS=1.926;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.447;QD=13.79;ReadPosRankSum=-0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532809    GT:AD:DP:GQ:PL    0/1:19,16:35:99:526,0,544
11    82561661    rs10792655    T    C    346.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534264    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:379,30,0
11    82564294    rs2298668    T    G    464.67    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=46;Dels=0.0;FS=1.164;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.627;QD=10.1;ReadPosRankSum=-0.603;SNPEFF_AMINO_ACID_CHANGE=E112D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_82564219_82564320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313010    GT:AD:DP:GQ:PL    0/1:24,22:46:99:495,0,766
11    82595975    rs6592087    T    A    1854.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRCP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313010    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1888,144,0
11    82641001    rs2127363    C    A    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=11.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528189    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:66,6,0
11    82641157    rs2170009    A    G    417.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528189    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:451,36,0
11    82641364    rs10431162    G    C    1040.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528189    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1074,78,0
11    82641500    rs10431163    G    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528189    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    82643760    rs7947780    G    T    2155.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.439;MQ=59.63;MQ0=0;QD=34.21;SNPEFF_AMINO_ACID_CHANGE=R159S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_82642774_82645697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf82;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329143    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2188,172,0
11    82644904    rs7130899    G    A    1671    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=V541I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_82642774_82645697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf82;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329143    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1704,132,0
11    82874970    rs10898088    G    A    834.20    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.203;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.564;QD=19.4;ReadPosRankSum=1.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533018    GT:AD:DP:GQ:PL    0/1:15,27:43:99:864,0,443
11    82921538    rs553484    C    T    385.32    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=36;Dels=0.0;FS=3.003;HRun=2;HaplotypeScore=0.8667;MQ=59.36;MQ0=0;MQRankSum=-1.364;QD=10.7;ReadPosRankSum=2.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260047    GT:AD:DP:GQ:PL    0/1:21,15:36:99:415,0,625
11    82952108    rs625102    T    C    138.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=9.86;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260047    GT:AD:DP:GQ:PL    0/1:8,6:14:99:168,0,284
11    82972770    .    T    TCA    327.16    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DP=11;FS=0.0;HRun=0;HaplotypeScore=27.9415;IndelType=I;MQ=61.94;MQ0=0;MQRankSum=1.931;QD=29.74;ReadPosRankSum=-0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528190    GT:AD:DP:GQ:PL    0/1:3,8:11:80.53:366,0,81
11    82973045    rs645954    C    T    1327.80    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.73;MQ0=0;MQRankSum=-2.016;QD=19.24;ReadPosRankSum=1.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528190    GT:AD:DP:GQ:PL    0/1:25,44:69:99:1358,0,765
11    82976874    rs99146    G    C    1715.68    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.998;DB;DP=115;Dels=0.0;FS=5.413;HRun=0;HaplotypeScore=1.8305;MQ=59.4;MQ0=0;MQRankSum=-1.216;QD=14.92;ReadPosRankSum=-0.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC90B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527025    GT:AD:DP:GQ:PL    0/1:58,57:115:99:1746,0,1751
11    82984985    rs543562    T    A    313.71    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.494;DB;DP=31;Dels=0.03;FS=1.451;HRun=8;HaplotypeScore=1.9243;MQ=60.0;MQ0=0;MQRankSum=-1.68;QD=9.8;ReadPosRankSum=-1.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC90B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526631    GT:AD:DP:GQ:PL    0/1:16,15:31:99:344,0,575
11    82991493    rs509815    C    T    128.12    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=16.01;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC90B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455220    GT:AD:DP:GQ:PL    0/1:3,5:8:89.17:158,0,89
11    82996986    rs494791    A    C    45.77    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.437;QD=3.52;ReadPosRankSum=-1.099;SNPEFF_AMINO_ACID_CHANGE=F10L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_82996916_82997021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC90B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529073    GT:AD:DP:GQ:PL    0/1:10,3:13:75.76:76,0,336
11    83180522    rs1432051    T    C    110.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=13.8;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524601    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,121
11    83585583    rs11447183    T    TA    209.43    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=88.3105;IndelType=I;MQ=59.18;MQ0=0;MQRankSum=-1.324;QD=13.96;ReadPosRankSum=1.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280241    GT:AD:DP:GQ:PL    0/1:7,8:15:99:248,0,213
11    83676586    rs960531    C    G    365.67    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.977;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=12.19;ReadPosRankSum=-1.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280241    GT:AD:DP:GQ:PL    0/1:16,14:30:99:396,0,576
11    83691458    rs10792700    G    C    500.31    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DB;DP=29;Dels=0.0;FS=3.163;HRun=0;HaplotypeScore=2.7879;MQ=60.0;MQ0=0;MQRankSum=-0.327;QD=17.25;ReadPosRankSum=0.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524941    GT:AD:DP:GQ:PL    0/1:14,15:29:99:530,0,479
11    83810113    rs3750917    T    G    1269.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280241    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1302,96,0
11    83878075    rs1869472    G    A    2921.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280241    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2955,217,0
11    83962251    rs7933566    A    G    557.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280241    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:590,45,0
11    84822798    rs601375    T    G    1279.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376104    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1313,99,0
11    85339542    rs575050    G    T    78.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376104    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
11    85408832    rs290173    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316356    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    85418591    rs3069561    AACAG    A    1416.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=166.4246;IndelType=D;MQ=58.43;MQ0=0;QD=42.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524911    GT:AD:DP:GQ:PL    1/1:6,27:33:78.27:1458,78,0
11    85431755    rs7116742    C    T    66.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.55;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316356    GT:AD:DP:GQ:PL    0/1:4,3:7:96.83:97,0,136
11    85435001    rs34653849    T    TA    3009.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;FS=0.0;HRun=8;HaplotypeScore=245.0824;IndelType=I;MQ=60.93;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316356    GT:AD:DP:GQ:PL    1/1:6,88:94:99:3052,265,0
11    85435730    rs550404    C    T    1608.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_AMINO_ACID_CHANGE=P1114;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85435075_85439071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359152    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1641,120,0
11    85436352    rs641393    G    A    1890.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_AMINO_ACID_CHANGE=T383M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85435075_85437511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354566    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1924,144,0
11    85436394    rs556669    T    C    1988.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=D369G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85435075_85437511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354566    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2021,153,0
11    85436500    rs580459    T    C    2930.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.124;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=34.48;ReadPosRankSum=-1.072;SNPEFF_AMINO_ACID_CHANGE=M334V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85435075_85437511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354566    GT:AD:DP:GQ:PL    1/1:1,84:85:99:2964,184,0
11    85436699    rs598346    A    G    2875.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=P267;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85435075_85437511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354566    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2909,226,0
11    85436868    rs597480    G    C    2553.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_AMINO_ACID_CHANGE=A211G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85435075_85437511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354566    GT:AD:DP:GQ:PL    1/1:0,71:72:99:2586,193,0
11    85437896    rs491867    A    G    3867.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.8;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=G392;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85435075_85439071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359152    GT:AD:DP:GQ:PL    1/1:0,117:118:99:3867,325,0
11    85447611    rs680498    T    C    924.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=S124;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85447544_85447655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527523    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:958,75,0
11    85456703    rs647912    T    C    3227.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559;DB;DP=100;Dels=0.0;FS=4.427;HRun=1;HaplotypeScore=0.9987;MQ=59.3;MQ0=0;MQRankSum=0.485;QD=32.27;ReadPosRankSum=1.212;SNPEFF_AMINO_ACID_CHANGE=E122;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85456680_85456815;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316356    GT:AD:DP:GQ:PL    1/1:1,99:100:99:3260,216,0
11    85576113    rs112846596    C    CT    3039.90    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=9.635;DB;DP=176;FS=4.61;HRun=3;HaplotypeScore=716.2696;IndelType=I;MQ=59.85;MQ0=0;MQRankSum=1.124;QD=17.27;ReadPosRankSum=-0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280245    GT:AD:DP:GQ:PL    0/1:91,85:176:99:3079,0,2501
11    85576127    rs36093844    C    T    2529.21    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.886;DB;DP=191;Dels=0.0;FS=3.025;HRun=3;HaplotypeScore=0.0;MQ=59.99;MQ0=0;MQRankSum=0.111;QD=13.24;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280245    GT:AD:DP:GQ:PL    0/1:94,97:191:99:2559,0,2942
11    85584052    rs116940726    A    C    36.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
11    85593529    rs17817308    G    A    1094.28    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=3.784;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5402;MQ=60.0;MQ0=0;MQRankSum=1.978;QD=18.87;ReadPosRankSum=-0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280245    GT:AD:DP:GQ:PL    0/1:25,33:58:99:1124,0,679
11    85593906    rs17744675    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    85609806    rs10501601    A    T    114.93    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.99;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280245    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:145,0,28
11    85610109    rs725459    G    C    239.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.877;QD=10.87;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280245    GT:AD:DP:GQ:PL    0/1:14,8:22:99:269,0,523
11    85622518    rs140532988    C    CA    450.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.095;DB;DP=32;FS=3.31;HRun=7;HaplotypeScore=83.7261;IndelType=I;MQ=59.62;MQ0=0;MQRankSum=-0.769;QD=14.09;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280245    GT:AD:DP:GQ:PL    0/1:16,16:32:99:490,0,315
11    85626569    rs60185300    G    A    548.59    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.588;DB;DP=42;Dels=0.0;FS=3.577;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=13.06;ReadPosRankSum=0.846;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529676    GT:AD:DP:GQ:PL    0/1:25,17:42:99:579,0,835
11    85627108    rs7927222    T    C    1036.25    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.44;MQ0=0;MQRankSum=-0.127;QD=14.0;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=S204;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85627074_85627276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376067    GT:AD:DP:GQ:PL    0/1:38,36:74:99:1066,0,1236
11    85685574    rs4944550    C    T    862.83    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.955;DB;DP=49;Dels=0.0;FS=11.572;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.238;QD=17.61;ReadPosRankSum=0.861;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526907    GT:AD:DP:GQ:PL    0/1:18,31:49:99:893,0,529
11    85692061    rs17817690    A    G    33.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.75;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534375    GT:AD:DP:GQ:PL    0/1:4,2:6:63.23:63,0,144
11    85692181    rs76719109    A    C    421.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.585;DB;DP=33;Dels=0.0;FS=3.436;HRun=1;HaplotypeScore=1.8273;MQ=60.0;MQ0=0;MQRankSum=0.56;QD=12.76;ReadPosRankSum=-0.994;SNPEFF_AMINO_ACID_CHANGE=A489;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85692172_85692271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICALM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528398    GT:AD:DP:GQ:PL    0/1:18,15:33:99:451,0,549
11    85692342    rs2508688    A    C    505.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356360    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:539,45,0
11    85714288    rs7951988    T    C    671.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531771    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:705,54,0
11    85723527    rs17745153    C    T    97.05    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.7;ReadPosRankSum=1.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528256    GT:AD:DP:GQ:PL    0/1:6,4:10:99:127,0,200
11    85725937    rs592297    C    T    900.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_AMINO_ACID_CHANGE=Q123;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85725913_85726006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICALM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525162    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:933,69,0
11    85737502    rs541674    A    G    322.42    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.098;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.122;QD=18.97;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356360    GT:AD:DP:GQ:PL    0/1:7,10:17:99:352,0,240
11    85961166    rs2270680    C    T    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263360    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:63,0,71
11    85966177    rs7950735    G    T    144.30    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=16.03;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263360    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,100
11    85967709    rs10792842    G    A    79.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263360    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:110,0,29
11    85968623    rs974144    C    T    305.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=28;Dels=0.0;FS=1.527;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.482;QD=10.92;ReadPosRankSum=0.942;SNPEFF_AMINO_ACID_CHANGE=L207;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_85968557_85968638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EED;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263360    GT:AD:DP:GQ:PL    0/1:14,14:28:99:336,0,463
11    85975337    rs78475799    A    T    893.07    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=54;Dels=0.0;FS=1.266;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.701;QD=16.54;ReadPosRankSum=1.013;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_85974987_85977258;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EED;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534564    GT:AD:DP:GQ:PL    0/1:26,28:54:99:923,0,785
11    85977117    rs10898460    G    A    3414.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8057;MQ=59.81;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263360    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3415,256,0
11    85979270    rs2270681    T    G    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263360    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
11    85979636    rs71040225    C    CGTGT    789.70    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=309.3621;IndelType=I;MQ=57.24;MQ0=0;MQRankSum=-0.75;QD=15.79;ReadPosRankSum=-1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533228    GT:AD:DP:GQ:PL    0/1:34,12:50:99:829,0,278
11    86017602    rs11822824    T    C    238.09    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.592;QD=18.31;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278483    GT:AD:DP:GQ:PL    0/1:3,10:13:88.14:268,0,88
11    86017658    rs291247    A    T    133.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278483    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:166,15,0
11    86055901    rs6592284    T    C    281.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524519    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:315,24,0
11    86086393    rs292093    C    A    381.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278487    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:415,30,0
11    86098680    rs292109    T    C    2722.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.72;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=I88;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_86098558_86098701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354755    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2756,214,0
11    86111595    rs7947537    C    T    857.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531271    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:891,66,0
11    86111700    rs12272824    A    T    2361.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=34.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531271    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2394,178,0
11    86119396    rs4412777    G    A    324.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529603    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
11    86123357    rs3741007    C    T    770.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=35.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529603    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:803,60,0
11    86123467    rs3741006    G    A    1554.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=A154;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_86123429_86123601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278487    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1588,114,0
11    86133416    rs1452134    T    C    75.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278487    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
11    86133468    rs1452135    G    A    114.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278487    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:147,12,0
11    86133784    rs1056194    C    T    836.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525247    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:870,66,0
11    86153911    rs7548    G    A    1169.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=Y535;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_86153863_86153961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359636    GT:AD:DP:GQ:PL    1/1:0,38:38:90.28:1203,90,0
11    86157998    rs4944580    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526504    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    86159223    rs34662182    C    T    698.97    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.843;DB;DP=38;Dels=0.0;FS=5.388;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=18.39;ReadPosRankSum=1.434;SNPEFF_AMINO_ACID_CHANGE=V402;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_86159192_86159297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359636    GT:AD:DP:GQ:PL    0/1:16,22:38:99:729,0,462
11    86161147    rs4944581    A    C    243.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359636    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
11    86161388    rs1042780    C    G    574.45    PASS    AB=0.241;AC=1;AF=0.50;AN=2;BaseQRankSum=1.486;DB;DP=31;Dels=0.0;FS=10.779;HRun=0;HaplotypeScore=0.8321;MQ=58.5;MQ0=0;MQRankSum=0.743;QD=18.53;ReadPosRankSum=-0.743;SNPEFF_AMINO_ACID_CHANGE=K324N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_86161343_86161440;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359636    GT:AD:DP:GQ:PL    0/1:7,22:31:99:604,0,182
11    86198596    rs2279048    A    G    192.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323418    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:225,18,0
11    86208897    rs609848    A    G    1002.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323418    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1035,81,0
11    86209327    rs79241234    C    A    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323418    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:70,0,69
11    86267678    rs4943943    G    A    889.37    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=4.336;DB;DP=57;Dels=0.0;FS=1.207;HRun=0;HaplotypeScore=0.6651;MQ=59.6;MQ0=0;MQRankSum=0.755;QD=15.6;ReadPosRankSum=0.976;SNPEFF_AMINO_ACID_CHANGE=D128;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_86267595_86267744;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359636    GT:AD:DP:GQ:PL    0/1:25,32:57:99:919,0,638
11    86270684    rs34249558    C    T    1219.36    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.758;DB;DP=113;Dels=0.0;FS=3.793;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.971;QD=10.79;ReadPosRankSum=-0.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323418    GT:AD:DP:GQ:PL    0/1:71,42:113:99:1249,0,2097
11    86519925    rs112601197    CGTGT    C    406.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=139.5658;IndelType=D;MQ=51.96;MQ0=0;MQRankSum=2.332;QD=20.31;ReadPosRankSum=-1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527521    GT:AD:DP:GQ:PL    0/1:8,10:20:99:445,0,272
11    86868347    rs556139    C    T    1302.87    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.056;DB;DP=86;Dels=0.0;FS=2.851;HRun=1;HaplotypeScore=0.8941;MQ=59.21;MQ0=0;MQRankSum=0.132;QD=15.15;ReadPosRankSum=-1.252;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305494    GT:AD:DP:GQ:PL    0/1:41,45:86:99:1333,0,1259
11    86868361    rs141275038    GT    G    1882.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.123;DB;DP=97;FS=0.0;HRun=12;HaplotypeScore=452.5022;IndelType=D;MQ=59.74;MQ0=0;MQRankSum=-0.999;QD=19.41;ReadPosRankSum=0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305494    GT:AD:DP:GQ:PL    1/1:9,85:97:99:1925,205,0
11    86868466    rs79262699    A    T    1485.93    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.62;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8154;MQ=58.63;MQ0=0;MQRankSum=0.71;QD=14.57;ReadPosRankSum=-0.979;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526733    GT:AD:DP:GQ:PL    0/1:52,50:102:99:1516,0,1546
11    86868556    rs77656057    T    G    496.43    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=3.072;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.971;QD=13.42;ReadPosRankSum=-1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526733    GT:AD:DP:GQ:PL    0/1:21,16:37:99:526,0,696
11    86868639    rs77480895    A    C    112.55    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.51;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526733    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:143,0,27
11    87032215    rs7112344    T    C    1328.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305494    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1362,105,0
11    87847018    rs3740925    C    T    1149.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243662    GT:AD:DP:GQ:PL    1/1:0,31:31:90.27:1183,90,0
11    87908448    rs302646    A    G    896.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;QD=28.0;SNPEFF_AMINO_ACID_CHANGE=S35;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_87908351_87908635;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243662    GT:AD:DP:GQ:PL    1/1:0,32:32:72.21:929,72,0
11    87908563    rs3812730    G    A    603.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=28.76;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_87908351_87908635;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243662    GT:AD:DP:GQ:PL    1/1:0,21:21:48.15:637,48,0
11    88033661    rs217116    A    G    532.30    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.889;DB;DP=62;Dels=0.0;FS=1.231;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.861;QD=8.59;ReadPosRankSum=-1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227266    GT:AD:DP:GQ:PL    0/1:37,25:62:99:562,0,1217
11    88045583    rs217086    A    G    2365.91    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.336;DB;DP=150;Dels=0.0;FS=1.604;HRun=0;HaplotypeScore=1.367;MQ=59.85;MQ0=0;MQRankSum=-0.739;QD=15.77;ReadPosRankSum=0.017;SNPEFF_AMINO_ACID_CHANGE=I136T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_88045556_88045722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393302    GT:AD:DP:GQ:PL    0/1:72,78:150:99:2396,0,2313
11    88045815    rs11426721    C    CT    956.38    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.275;DB;DP=47;FS=0.0;HRun=3;HaplotypeScore=101.6284;IndelType=I;MQ=60.52;MQ0=0;MQRankSum=0.614;QD=20.35;ReadPosRankSum=0.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227266    GT:AD:DP:GQ:PL    0/1:20,27:47:99:995,0,508
11    88059683    rs217060    G    A    269.65    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6316;MQ=57.85;MQ0=0;MQRankSum=-0.788;QD=8.99;ReadPosRankSum=0.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320621    GT:AD:DP:GQ:PL    0/1:15,14:30:99:300,0,323
11    88059694    rs3837397    T    TA    46.98    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=25;FS=0.0;HRun=15;HaplotypeScore=264.325;IndelType=I;MQ=57.41;MQ0=0;MQRankSum=-0.267;QD=1.88;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320621    GT:AD:DP:GQ:PL    0/1:18,5:25:86.01:86,0,96
11    88061405    rs580743    A    C    320.45    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.515;DB;DP=22;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=14.57;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227266    GT:AD:DP:GQ:PL    0/1:8,14:22:99:350,0,279
11    88068004    rs217075    T    A    182.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=18.21;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227266    GT:AD:DP:GQ:PL    0/1:4,6:10:99:212,0,138
11    88068052    rs217076    G    T    344.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.646;DB;DP=24;Dels=0.0;FS=2.291;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.154;QD=14.36;ReadPosRankSum=0.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227266    GT:AD:DP:GQ:PL    0/1:12,12:24:99:375,0,324
11    88068329    rs217077    T    A    164.30    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=10.95;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227266    GT:AD:DP:GQ:PL    0/1:8,7:15:99:194,0,294
11    88242024    rs2941563    T    G    123.23    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.678;QD=11.2;ReadPosRankSum=-1.034;SNPEFF_AMINO_ACID_CHANGE=G1093;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_88240978_88242672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305432    GT:AD:DP:GQ:PL    0/1:4,7:11:99:153,0,125
11    88258689    rs4753486    C    T    360.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=12.03;ReadPosRankSum=-1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305432    GT:AD:DP:GQ:PL    0/1:15,15:30:99:391,0,527
11    88338165    rs3816649    G    A    390.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=34;Dels=0.0;FS=3.211;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.594;QD=11.5;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305432    GT:AD:DP:GQ:PL    0/1:17,17:34:99:421,0,499
11    88645129    rs626218    T    A    2045.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.73;MQ0=3;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305432    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2079,174,0
11    88780154    rs10741300    G    T    110.04    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305432    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
11    88911696    rs1042602    C    A    3452.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=39.24;SNPEFF_AMINO_ACID_CHANGE=S192Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_88910620_88911940;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263321    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3453,259,0
11    89017961    rs1126809    G    A    1369.10    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=5.339;DB;DP=78;Dels=0.0;FS=2.13;HRun=2;HaplotypeScore=1.8218;MQ=59.76;MQ0=0;MQRankSum=-0.132;QD=17.55;ReadPosRankSum=-1.489;SNPEFF_AMINO_ACID_CHANGE=R402Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_89017941_89018122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263321    GT:AD:DP:GQ:PL    0/1:33,44:78:99:1399,0,847
11    89133449    rs317139    C    T    2683.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4658;MQ=55.63;MQ0=1;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=M149I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_89133383_89133547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527626    GT:AD:DP:GQ:PL    1/1:1,77:79:99:2717,205,0
11    89221958    rs597046    G    C    176    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393282    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
11    89223616    rs490934    C    G    2196.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263317    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2229,166,0
11    89224326    rs10830279    G    A    552.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.3;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263317    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:586,45,0
11    89224453    rs2289125    A    C    596.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.92;MQ0=0;QD=25.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424319    GT:AD:DP:GQ:PL    1/1:0,23:23:48.14:630,48,0
11    89395303    rs111229653    AT    A    1094.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=11;HaplotypeScore=152.6602;IndelType=D;MQ=41.98;MQ0=0;QD=19.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FOLH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542857    GT:AD:DP:GQ:PL    1/1:5,50:55:99:1136,140,0
11    89403414    rs10734120    C    T    122.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FOLH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525540    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
11    89486832    rs116846755    T    C    1079.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.883;DB;DP=161;Dels=0.0;FS=0.649;HRun=0;HaplotypeScore=0.734;MQ=40.97;MQ0=8;MQRankSum=-7.281;QD=6.71;ReadPosRankSum=1.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-313I2.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527332    GT:AD:DP:GQ:PL    0/1:92,69:161:99:1110,0,2897
11    89486872    rs74954807    T    C    1054.02    MQFilter40    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.298;DB;DP=157;Dels=0.0;FS=8.317;HRun=0;HaplotypeScore=3.3282;MQ=36.52;MQ0=20;MQRankSum=-4.13;QD=6.71;ReadPosRankSum=-0.305;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-313I2.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527332    GT:AD:DP:GQ:PL    0/1:97,60:157:99:1084,0,2516
11    89486948    rs140920385    T    C    58.40    MQFilter40;QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.459;DB;DP=161;Dels=0.0;FS=24.631;HRun=1;HaplotypeScore=1.7356;MQ=25.64;MQ0=54;MQRankSum=-3.018;QD=0.36;ReadPosRankSum=2.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-313I2.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527332    GT:AD:DP:GQ:PL    0/1:130,31:161:88.39:88,0,2134
11    89510648    rs143091059    A    G    162.01    MQFilter40    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=15;Dels=0.0;FS=4.393;HRun=1;HaplotypeScore=0.0;MQ=29.16;MQ0=1;MQRankSum=1.276;QD=10.8;ReadPosRankSum=0.068;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-529A4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529289    GT:AD:DP:GQ:PL    0/1:7,8:15:99:192,0,158
11    89531764    .    T    C    309.47    MQFilter40    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.832;DP=57;Dels=0.0;FS=14.902;HRun=0;HaplotypeScore=0.8321;MQ=37.88;MQ0=3;MQRankSum=0.644;QD=5.43;ReadPosRankSum=-0.198;SNPEFF_AMINO_ACID_CHANGE=N221S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_89531115_89531797;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532501    GT:AD:DP:GQ:PL    0/1:34,23:57:99:339,0,777
11    89531903    .    T    A    51.46    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=32.75;MQ0=1;MQRankSum=0.358;QD=8.58;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329758    GT:AD:DP:GQ:PL    0/1:2,4:6:53.86:81,0,54
11    89537837    rs138134099    C    T    55.66    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.15;MQ0=0;MQRankSum=-0.55;QD=7.95;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329758    GT:AD:DP:GQ:PL    0/1:3,4:7:76.96:86,0,77
11    89578241    .    A    G    48    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.478;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.62;MQ0=94;MQRankSum=0.212;QD=0.39;ReadPosRankSum=-0.531;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TRIM80P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532912    GT:AD:DP:GQ:PL    1/1:37,85:122:9:80,9,0
11    89591550    .    G    A    209.21    MQFilter40    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=2.328;DP=75;Dels=0.0;FS=18.283;HRun=2;HaplotypeScore=0.9734;MQ=39.74;MQ0=2;MQRankSum=-0.963;QD=2.79;ReadPosRankSum=0.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SPRYD5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423506    GT:AD:DP:GQ:PL    0/1:58,17:75:99:239,0,1578
11    89591912    .    T    A    143.01    MQFilter40    AC=2;AF=1.00;AN=2;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=11.04;MQ0=37;QD=3.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SPRYD5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423506    GT:AD:DP:GQ:PL    1/1:1,41:42:15.04:176,15,0
11    89726773    .    A    G    30.74    MQFilter40;QDFilter2    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DP=67;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=8.15;MQ0=57;MQRankSum=1.733;QD=0.46;ReadPosRankSum=0.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TRIM53P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532014    GT:AD:DP:GQ:PL    0/1:50,17:67:41.33:61,0,41
11    89727291    .    A    G    38.10    MQFilter40;QDFilter2    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.83;MQ0=56;MQRankSum=-0.869;QD=0.56;ReadPosRankSum=-0.869;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TRIM53P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532014    GT:AD:DP:GQ:PL    0/1:42,26:68:14.67:68,0,15
11    89730432    .    C    T    153.13    MQFilter40;QDFilter2    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=3.413;DP=166;Dels=0.0;FS=1.271;HRun=1;HaplotypeScore=3.4392;MQ=16.07;MQ0=72;MQRankSum=-0.267;QD=0.92;ReadPosRankSum=-0.086;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TRIM53P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532014    GT:AD:DP:GQ:PL    0/1:119,47:166:99:183,0,1279
11    89756231    .    C    CT    863.95    PASS    AC=2;AF=1.00;AN=2;DP=25;FS=0.0;HRun=6;HaplotypeScore=56.074;IndelType=I;MQ=25.67;MQ0=5;QD=27.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-313I2.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525033    GT:AD:DP:GQ:PL    1/1:3,29:25:72.23:906,72,0
11    89768360    .    T    G    258.69    MQFilter40;QDFilter2    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=3.079;DP=194;Dels=0.0;FS=7.012;HRun=0;HaplotypeScore=0.0;MQ=12.3;MQ0=129;MQRankSum=-1.011;QD=1.33;ReadPosRankSum=1.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432771    GT:AD:DP:GQ:PL    0/1:122,72:194:99:289,0,737
11    89768813    rs143252356    G    T    1848.39    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.618;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9494;MQ=24.74;MQ0=62;MQRankSum=2.331;QD=14.79;ReadPosRankSum=1.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432771    GT:AD:DP:GQ:PL    1/1:39,86:125:99:1881,124,0
11    89771347    .    A    C    78.34    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DP=12;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=1.9733;MQ=22.45;MQ0=1;MQRankSum=0.825;QD=6.53;ReadPosRankSum=1.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432771    GT:AD:DP:GQ:PL    0/1:2,10:12:28.40:108,0,28
11    89771826    .    A    C    55.51    MQFilter40;QDFilter2    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.297;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6653;MQ=13.8;MQ0=76;MQRankSum=0.35;QD=0.55;ReadPosRankSum=1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432771    GT:AD:DP:GQ:PL    0/1:71,28:100:85.50:85,0,298
11    89771844    .    CT    C    80.12    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.862;DP=30;FS=0.0;HRun=13;HaplotypeScore=124.5786;IndelType=D;MQ=15.29;MQ0=88;MQRankSum=0.755;QD=0.64;ReadPosRankSum=0.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432771    GT:AD:DP:GQ:PL    0/1:86,34:30:99:119,0,400
11    89772112    rs114740958    C    G    31.96    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=1.38;QD=5.33;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432771    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,140
11    89791153    rs150561996    C    G    1006.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.13;MQ0=33;QD=13.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432771    GT:AD:DP:GQ:PL    1/1:17,55:72:96.16:1039,96,0
11    89804890    rs116087315    T    C    47.83    QDFilter2    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.538;DB;DP=116;Dels=0.0;FS=3.173;HRun=2;HaplotypeScore=1.8606;MQ=43.53;MQ0=20;MQRankSum=-6.298;QD=0.41;ReadPosRankSum=0.108;SNPEFF_AMINO_ACID_CHANGE=L263P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_89804864_89804961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM49L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432771    GT:AD:DP:GQ:PL    0/1:75,40:116:77.82:78,0,2416
11    89819110    .    A    G    288.90    MQFilter40;QDFilter2    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=5.555;DP=229;Dels=0.0;FS=1.309;HRun=1;HaplotypeScore=3.6161;MQ=15.52;MQ0=81;MQRankSum=-0.303;QD=1.26;ReadPosRankSum=2.307;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=UBTFL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530464    GT:AD:DP:GQ:PL    0/1:170,59:229:99:319,0,1360
11    89819304    .    A    G    712.80    MQFilter40    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=2.594;DP=207;DS;Dels=0.0;FS=50.215;HRun=1;HaplotypeScore=1.7621;MQ=26.23;MQ0=38;MQRankSum=-1.086;QD=3.44;ReadPosRankSum=-2.383;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=UBTFL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530464    GT:AD:DP:GQ:PL    0/1:153,54:207:99:743,0,2649
11    89909096    .    A    ATG    143.92    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.055;DP=22;FS=0.0;HRun=0;HaplotypeScore=85.2357;IndelType=I;MQ=60.49;MQ0=0;MQRankSum=-0.264;QD=6.54;ReadPosRankSum=-0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAALAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321955    GT:AD:DP:GQ:PL    0/1:16,5:22:99:183,0,344
11    92085623    rs76685441    C    T    2098.45    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.819;DB;DP=160;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=60.0;MQ0=0;MQRankSum=2.325;QD=13.12;ReadPosRankSum=-0.973;SNPEFF_AMINO_ACID_CHANGE=A115;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_92085262_92088570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    0/1:90,70:160:99:2128,0,2797
11    92257703    rs561408    T    G    638.93    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.565;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=19.36;ReadPosRankSum=1.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    0/1:14,19:33:99:669,0,481
11    92497990    rs3847524    C    G    1347.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1380,102,0
11    92530770    rs11020060    A    T    163.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
11    92531356    rs7949157    A    G    6181.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=59.1;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=Q1576R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_92531002_92535075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525166    GT:AD:DP:GQ:PL    1/1:0,180:180:99:6181,475,0
11    92532677    rs12362722    T    C    4936.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7898;MQ=59.55;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=P2016;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_92531002_92535075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525166    GT:AD:DP:GQ:PL    1/1:0,154:154:99:4936,385,0
11    92534442    rs3847531    A    G    3998.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=I2605V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_92531002_92535075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525166    GT:AD:DP:GQ:PL    1/1:0,120:120:99:3999,322,0
11    92539384    rs4753415    A    G    271.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:304,24,0
11    92564767    rs6483189    T    G    1655.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1688,132,0
11    92571146    rs34321934    G    A    164.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
11    92573911    rs10765565    G    T    5236.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6852;MQ=59.85;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=V3368L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_92573728_92573925;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525166    GT:AD:DP:GQ:PL    1/1:0,151:152:99:5237,382,0
11    92590448    rs4753069    A    G    3489.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=59.38;MQ0=0;QD=31.15;SNPEFF_AMINO_ACID_CHANGE=S147G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_92590380_92590514;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533797    GT:AD:DP:GQ:PL    1/1:0,111:112:99:3489,271,0
11    92592536    rs66603266    GT    G    1892.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=4;HaplotypeScore=150.2905;IndelType=D;MQ=60.94;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:3,54:57:99:1935,162,0
11    92599851    rs3847553    G    A    659.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:693,51,0
11    92619898    rs10765570    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    92620160    rs12421052    A    T    977.97    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=2.659;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.319;QD=15.05;ReadPosRankSum=0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    0/1:28,37:65:99:1008,0,889
11    92623493    rs7101609    G    C    284.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
11    92623515    rs7101614    G    T    388.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:422,33,0
11    92623608    rs7118363    A    G    1143.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298047    GT:AD:DP:GQ:PL    1/1:0,42:42:93.29:1176,93,0
11    92895920    rs78676517    T    C    1108.79    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.988;DB;DP=58;Dels=0.0;FS=3.84;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.826;QD=19.12;ReadPosRankSum=0.188;SNPEFF_AMINO_ACID_CHANGE=H195R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_92895872_92896041;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529184    GT:AD:DP:GQ:PL    0/1:20,38:58:99:1139,0,536
11    92914025    .    C    T    177.50    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.013;DP=29;Dels=0.0;FS=4.091;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.402;QD=6.12;ReadPosRankSum=1.962;SNPEFF_AMINO_ACID_CHANGE=V160M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_92913963_92914047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC36A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326402    GT:AD:DP:GQ:PL    0/1:22,7:29:99:207,0,743
11    93088319    rs3019224    C    A    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530273    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    93097210    rs975916    C    G    275.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298050    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:309,24,0
11    93103458    rs35803070    A    AAAT    2040.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=78.1104;IndelType=I;MQ=52.46;MQ0=0;QD=65.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298050    GT:AD:DP:GQ:PL    1/1:1,29:31:93.32:2083,93,0
11    93118515    rs3020057    G    A    2265.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.767;QD=36.55;ReadPosRankSum=0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298050    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2299,137,0
11    93122446    rs3020056    T    A    83.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532819    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:116,12,0
11    93122447    rs3020055    C    A    83.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532819    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:116,12,0
11    93140782    rs2605576    T    C    225.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298050    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:258,21,0
11    93140986    rs3020075    T    G    1890.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298050    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1924,153,0
11    93141058    rs3020076    C    T    2233.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298050    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2267,172,0
11    93141580    rs2259633    C    A    1480.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=Q246K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93141397_93141593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525646    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1514,120,0
11    93147927    rs2658776    A    G    137.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298050    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:170,15,0
11    93148423    rs2658777    C    T    1795.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530862    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1828,135,0
11    93170909    rs33912081    T    TC    780.75    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=0.62;DB;DP=68;FS=3.752;HRun=9;HaplotypeScore=413.5193;IndelType=I;MQ=56.49;MQ0=0;MQRankSum=0.981;QD=11.32;ReadPosRankSum=-1.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529909    GT:AD:DP:GQ:PL    0/1:41,24:68:43.62:820,0,44
11    93170925    rs2605584    G    A    1309.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.69;MQ0=0;QD=25.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529909    GT:AD:DP:GQ:PL    1/1:0,45:51:99:1342,105,0
11    93212161    rs2605594    A    G    553.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=26.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526869    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:586,51,0
11    93212245    rs3207348    C    T    425.01    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.522;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=12.88;ReadPosRankSum=-0.81;SNPEFF_AMINO_ACID_CHANGE=T37;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93211638_93212435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf75;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298966    GT:AD:DP:GQ:PL    0/1:16,17:33:99:455,0,445
11    93212254    rs2658797    C    T    580.51    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=40;Dels=0.0;FS=1.278;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.327;QD=14.51;ReadPosRankSum=-0.217;SNPEFF_AMINO_ACID_CHANGE=V34;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93211638_93212435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf75;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298966    GT:AD:DP:GQ:PL    0/1:19,21:40:99:611,0,508
11    93400052    rs7123801    G    A    590.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:623,45,0
11    93400106    rs4753489    A    C    169.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
11    93402096    rs1944101    C    A    1053.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_AMINO_ACID_CHANGE=T144;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93401974_93402098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1086,81,0
11    93402693    rs10765621    A    G    171.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.88;MQ0=0;QD=28.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,6:6:18.01:205,18,0
11    93403067    rs1954994    G    A    130.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
11    93408831    rs10831088    G    A    1313.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=R208Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93408737_93408832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1346,99,0
11    93408958    rs35646565    C    CA    204.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=4;HaplotypeScore=10.8849;IndelType=I;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
11    93412774    rs1944100    A    G    2559.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.38;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2593,202,0
11    93417437    rs4753098    C    T    221.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,7:7:21.03:254,21,0
11    93425159    rs4753495    C    A    2732.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.181;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5772;MQ=60.0;MQ0=0;MQRankSum=1.338;QD=31.05;ReadPosRankSum=0.984;SNPEFF_AMINO_ACID_CHANGE=A499E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93425093_93425196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:1,87:88:99:2765,167,0
11    93436275    rs6483261    G    A    74.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:107,9,0
11    93462102    rs1944099    G    C    168.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525446    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
11    93462607    rs7131178    A    T    1533.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=E2437V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93462600_93462696;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1567,117,0
11    93463332    rs7101779    A    G    1500.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=30.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525446    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1533,120,0
11    93463666    rs7119918    C    A    2140.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.46;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2174,160,0
11    93463726    rs34898352    T    TAG    2963.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=180.142;IndelType=I;MQ=58.33;MQ0=1;QD=56.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,52:50:99:3006,151,0
11    93464429    rs1944107    T    G    243.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:277,21,0
11    93466866    rs2155248    G    T    1887.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1731;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325212    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1920,138,0
11    93480708    rs624856    T    C    207.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.995;MQ=48.72;MQ0=0;QD=23.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531516    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:240,21,0
11    93487008    rs623993    G    A    1431.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527003    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1465,108,0
11    93488192    rs2510603    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527003    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
11    93488199    rs2434978    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527003    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    93490307    rs602665    C    T    200.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526335    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:233,18,0
11    93490682    rs604414    T    A    2477.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.533;MQ=57.6;MQ0=0;QD=26.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526335    GT:AD:DP:GQ:PL    1/1:3,90:93:99:2511,205,0
11    93494878    rs72097212    AAG    A    1069.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=111.765;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=1.476;QD=38.18;ReadPosRankSum=0.963;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530620    GT:AD:DP:GQ:PL    1/1:2,26:28:26.30:1111,26,0
11    93517874    rs63618760    C    G    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_AMINO_ACID_CHANGE=G65;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93517393_93517929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251871    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    93517886    rs2848477    G    C    81.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.3;SNPEFF_AMINO_ACID_CHANGE=E39D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93517884_93517929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427225    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
11    93521405    rs676586    C    T    204.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251871    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
11    93527219    rs657177    T    C    1309.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528786    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1343,105,0
11    93527282    rs68011443    GA    G    474.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=6;HaplotypeScore=75.2114;IndelType=D;MQ=60.0;MQ0=0;QD=27.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528786    GT:AD:DP:GQ:PL    1/1:1,16:17:48.12:516,48,0
11    93529434    rs687042    T    C    457.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528786    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:491,36,0
11    93534990    rs655699    G    A    1261.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=51.13;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525026    GT:AD:DP:GQ:PL    1/1:0,41:42:99:1295,102,0
11    93754508    rs2511403    G    A    2488.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=35.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2521,190,0
11    93797344    rs1945782    C    T    331.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
11    93797619    rs1945783    A    G    3607.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=N251D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93797497_93797676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3608,280,0
11    93803717    rs1878799    C    G    2293.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2327,178,0
11    93803771    rs1878800    T    C    1101.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1134,93,0
11    93806416    rs1914725    T    C    4066.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,120:120:99:4067,313,0
11    93808607    rs34403914    A    AAC    1551.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=85.2903;IndelType=I;MQ=61.9;MQ0=0;QD=55.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,27:28:84.29:1593,84,0
11    93834164    rs7942313    A    T    269.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:302,24,0
11    93834223    rs7927016    G    A    675.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:709,54,0
11    93839459    rs144455207    CT    C    91.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=17;FS=0.0;HRun=17;HaplotypeScore=150.7173;IndelType=D;MQ=49.64;MQ0=0;MQRankSum=0.29;QD=5.38;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:10,6:17:8.95:132,9,0
11    93844034    rs7925817    G    T    1811.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315765    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1845,138,0
11    93862493    rs1138800    A    C    527.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=Q5H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_93862094_93862659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000227638    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:560,45,0
11    93886838    rs7928030    G    C    662.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227638    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:695,51,0
11    94040156    rs569781    C    T    208.47    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.39;MQ0=0;MQRankSum=-0.067;QD=23.16;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOLR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440961    GT:AD:DP:GQ:PL    0/1:2,7:9:36.82:238,0,37
11    94040990    rs76986862    T    TCC    1116.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=1;HaplotypeScore=67.2636;IndelType=I;MQ=55.67;MQ0=0;QD=53.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOLR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440961    GT:AD:DP:GQ:PL    1/1:3,18:21:60.21:1159,60,0
11    94113288    rs3740867    C    G    327.88    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.662;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.22;QD=10.58;ReadPosRankSum=0.821;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243673    GT:AD:DP:GQ:PL    0/1:18,13:31:99:358,0,603
11    94134472    rs3824878    A    C    185.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.48;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_94134027_94134585;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243673    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:218,18,0
11    94134513    rs12791316    G    C    77.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.48;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_94134027_94134585;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243673    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
11    94179125    rs1014666    T    C    710.52    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.286;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9664;MQ=60.0;MQ0=0;MQRankSum=-1.024;QD=14.8;ReadPosRankSum=0.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323929    GT:AD:DP:GQ:PL    0/1:26,22:48:99:741,0,883
11    94197260    rs641936    A    G    504.07    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.137;DB;DP=53;Dels=0.0;FS=2.897;HRun=0;HaplotypeScore=1.6918;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=9.51;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323929    GT:AD:DP:GQ:PL    0/1:29,24:53:99:534,0,978
11    94197568    rs640627    C    T    94.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.8;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323929    GT:AD:DP:GQ:PL    0/1:4,4:8:99:124,0,132
11    94203868    rs610611    A    T    857.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540013    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:891,66,0
11    94209348    rs13447623    T    C    629.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536754    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:663,48,0
11    94223855    rs608452    A    G    398.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4923;MQ=58.2;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRE11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323929    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:431,39,0
11    94225807    rs496797    C    T    169.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.766;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=11.32;ReadPosRankSum=1.12;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRE11A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000407439    GT:AD:DP:GQ:PL    0/1:9,6:15:99:200,0,307
11    94225920    rs497763    C    T    854.25    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8154;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=14.73;ReadPosRankSum=0.312;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_94225808_94226072;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRE11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407439    GT:AD:DP:GQ:PL    0/1:27,31:58:99:884,0,886
11    94231257    rs2509943    C    G    451.87    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.069;QD=15.58;ReadPosRankSum=1.986;SNPEFF_AMINO_ACID_CHANGE=L128;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_94231237_94231313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD49;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545130    GT:AD:DP:GQ:PL    0/1:14,15:29:99:482,0,443
11    94231847    rs1046654    G    A    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.7;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534911    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,113
11    94310732    rs72963850    T    G    39.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.684;QD=4.37;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIWIL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299001    GT:AD:DP:GQ:PL    0/1:3,6:9:69.36:69,0,108
11    94320237    rs7110167    T    C    1474.21    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.07;DB;DP=118;Dels=0.0;FS=0.752;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.507;QD=12.49;ReadPosRankSum=1.168;SNPEFF_AMINO_ACID_CHANGE=F246;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_94320216_94320413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIWIL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299001    GT:AD:DP:GQ:PL    0/1:62,56:118:99:1504,0,1884
11    94326627    rs11020851    G    A    438.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.701;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.949;QD=14.61;ReadPosRankSum=-0.622;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIWIL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299001    GT:AD:DP:GQ:PL    0/1:15,15:30:99:468,0,533
11    94326765    rs57607909    G    C    772.39    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.744;DB;DP=59;Dels=0.0;FS=9.678;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.203;QD=13.09;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=A370P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_94326684_94326807;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIWIL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299001    GT:AD:DP:GQ:PL    0/1:32,27:59:99:802,0,1001
11    94326980    rs7120907    C    T    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIWIL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299001    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:67,0,31
11    94337220    rs593690    C    T    279.52    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.209;DB;DP=28;Dels=0.0;FS=3.492;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.16;QD=9.98;ReadPosRankSum=-0.321;SNPEFF_AMINO_ACID_CHANGE=L546;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_94337150_94337222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIWIL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299001    GT:AD:DP:GQ:PL    0/1:17,11:28:99:310,0,506
11    94354019    rs504010    T    C    175.07    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.969;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.434;QD=7.61;ReadPosRankSum=0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIWIL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543336    GT:AD:DP:GQ:PL    0/1:16,7:23:99:205,0,547
11    94501849    rs2915239    G    A    79.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299004    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
11    94533373    rs2303960    C    T    2363.31    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=190;Dels=0.0;FS=0.576;HRun=0;HaplotypeScore=4.7248;MQ=59.32;MQ0=0;MQRankSum=1.072;QD=12.37;ReadPosRankSum=0.499;SNPEFF_AMINO_ACID_CHANGE=P289;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_94532556_94533477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317829    GT:AD:DP:GQ:PL    0/1:103,86:190:99:2393,0,2735
11    94554525    rs2033363    A    G    79.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=15.92;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317829    GT:AD:DP:GQ:PL    0/1:2,3:5:61.03:110,0,61
11    94599211    .    G    A    2142.87    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=2.88;DP=121;Dels=0.0;FS=1.511;HRun=0;HaplotypeScore=1.7882;MQ=59.62;MQ0=0;MQRankSum=-0.036;QD=17.71;ReadPosRankSum=-2.085;SNPEFF_AMINO_ACID_CHANGE=R739H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_94599107_94599333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMOTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317829    GT:AD:DP:GQ:PL    0/1:46,75:121:99:2173,0,1199
11    94696474    rs58293261    G    GA    805.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.954;DB;DP=32;FS=0.0;HRun=10;HaplotypeScore=89.0849;IndelType=I;MQ=60.26;MQ0=0;MQRankSum=2.12;QD=25.18;ReadPosRankSum=-0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=CWC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540722    GT:AD:DP:GQ:PL    1/1:3,28:32:60.52:848,61,0
11    94699391    rs71036349    TACACACACAC    T    831.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=216.3491;IndelType=D;MQ=44.91;MQ0=0;QD=37.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=CWC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539856    GT:AD:DP:GQ:PL    1/1:9,12:22:33.10:874,33,0
11    94699507    rs34805065    A    AT    2773.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.0;HRun=1;HaplotypeScore=133.6248;IndelType=I;MQ=56.54;MQ0=0;QD=42.02;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=CWC15;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000279839    GT:AD:DP:GQ:PL    1/1:2,64:66:99:2815,190,0
11    94703049    rs7107185    T    C    977.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=36.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335080    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1010,75,0
11    94704037    rs3737505    C    G    1737.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=36.96;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335080    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1770,132,0
11    94704092    rs4753645    T    A    3216.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.782;MQ=59.32;MQ0=0;QD=31.53;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335080    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3249,274,0
11    94704094    rs4753646    G    A    3365.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8155;MQ=59.35;MQ0=0;QD=31.75;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335080    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3366,274,0
11    94704689    rs3831469    A    AAC    2161.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.402;DB;DP=76;FS=0.0;HRun=0;HaplotypeScore=222.0943;IndelType=I;MQ=60.96;MQ0=0;MQRankSum=0.752;QD=28.45;ReadPosRankSum=0.024;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335080    GT:AD:DP:GQ:PL    1/1:25,48:76:99:2204,104,0
11    94730403    rs11371511    C    CA    406.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=60.2883;IndelType=I;MQ=60.0;MQ0=0;QD=25.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536741    GT:AD:DP:GQ:PL    1/1:1,15:16:42.11:448,42,0
11    94800902    rs11410745    G    GC    2543.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=1;HaplotypeScore=158.3952;IndelType=I;MQ=60.32;MQ0=0;QD=40.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=SRSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446101    GT:AD:DP:GQ:PL    1/1:4,59:63:99:2586,175,0
11    94861491    rs599281    C    T    251.50    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.183;DB;DP=32;Dels=0.0;FS=1.657;HRun=1;HaplotypeScore=0.8321;MQ=57.95;MQ0=0;MQRankSum=0.752;QD=7.86;ReadPosRankSum=-0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278505    GT:AD:DP:GQ:PL    0/1:22,10:32:99:281,0,723
11    94862577    rs3740861    G    T    775.18    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.336;DB;DP=54;Dels=0.0;FS=7.565;HRun=0;HaplotypeScore=1.367;MQ=59.57;MQ0=0;MQRankSum=-0.052;QD=14.36;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=G446V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_94861541_94865809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278505    GT:AD:DP:GQ:PL    0/1:29,25:54:99:805,0,872
11    94908658    rs11021065    G    T    590.62    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=5.005;DB;DP=51;Dels=0.0;FS=1.106;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.316;QD=11.58;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278499    GT:AD:DP:GQ:PL    0/1:30,21:51:99:621,0,806
11    94915241    rs10831316    T    G    500.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.162;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.787;QD=17.89;ReadPosRankSum=-1.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SESN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393234    GT:AD:DP:GQ:PL    0/1:12,16:28:99:531,0,368
11    95532586    .    GT    G    1022.57    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=6.283;DP=69;FS=1.208;HRun=4;HaplotypeScore=169.2997;IndelType=D;MQ=60.04;MQ0=0;MQRankSum=-0.514;QD=14.82;ReadPosRankSum=-0.707;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325486    GT:AD:DP:GQ:PL    0/1:34,35:69:99:1062,0,1105
11    95712897    rs7123133    G    T    1758.55    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.958;DB;DP=158;Dels=0.0;FS=2.971;HRun=0;HaplotypeScore=0.9958;MQ=59.85;MQ0=0;MQRankSum=0.897;QD=11.13;ReadPosRankSum=-0.274;SNPEFF_AMINO_ACID_CHANGE=P896T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_95712112_95713127;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440572    GT:AD:DP:GQ:PL    0/1:97,61:158:99:1789,0,3221
11    95713024    rs7123272    G    A    1335.08    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=3.12;DB;DP=98;Dels=0.0;FS=0.791;HRun=0;HaplotypeScore=2.7024;MQ=60.0;MQ0=0;MQRankSum=-0.482;QD=13.62;ReadPosRankSum=1.873;SNPEFF_AMINO_ACID_CHANGE=H853;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_95712112_95713127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440572    GT:AD:DP:GQ:PL    0/1:53,44:98:99:1365,0,1573
11    95713175    rs74393839    C    T    343.73    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.782;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.47;MQ0=0;MQRankSum=-1.373;QD=9.82;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440572    GT:AD:DP:GQ:PL    0/1:23,12:35:99:374,0,798
11    95713315    rs685252    T    C    109.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.29;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440572    GT:AD:DP:GQ:PL    0/1:2,4:6:67.18:140,0,67
11    95724563    rs623543    T    C    373.27    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.198;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=13.33;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440572    GT:AD:DP:GQ:PL    0/1:15,13:28:99:403,0,523
11    95724658    rs488398    C    G    1695.40    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DB;DP=125;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=0.573;QD=13.56;ReadPosRankSum=0.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440572    GT:AD:DP:GQ:PL    0/1:68,57:125:99:1725,0,2306
11    95825374    rs141671766    TTGCTGCTGC    T    532.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=97.4359;IndelType=D;MQ=48.98;MQ0=0;QD=53.3;SNPEFF_AMINO_ACID_CHANGE=QQQQ604Q;SNPEFF_CODON_CHANGE=cagcagcagcaa/caa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_11_95825056_95826681;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440572    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:575,30,0
11    95825797    rs7931870    A    G    849.45    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.649;DB;DP=57;Dels=0.0;FS=2.338;HRun=1;HaplotypeScore=1.8315;MQ=59.6;MQ0=0;MQRankSum=-0.383;QD=14.9;ReadPosRankSum=-1.482;SNPEFF_AMINO_ACID_CHANGE=S466;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_95825056_95826681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAML2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440572    GT:AD:DP:GQ:PL    0/1:23,34:57:99:879,0,717
11    96092376    rs10765801    C    T    177.34    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=11.82;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278520    GT:AD:DP:GQ:PL    0/1:7,8:15:99:207,0,167
11    96106737    rs7936234    C    A    169.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.11;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278520    GT:AD:DP:GQ:PL    0/1:7,7:14:99:200,0,246
11    96116444    rs10831519    T    C    656.59    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.049;DB;DP=64;Dels=0.0;FS=6.832;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=10.26;ReadPosRankSum=0.146;SNPEFF_AMINO_ACID_CHANGE=Q327R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_96116433_96116637;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC82;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278520    GT:AD:DP:GQ:PL    0/1:36,28:64:99:687,0,1088
11    99690286    rs10790978    T    G    1169.17    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.138;DB;DP=144;Dels=0.0;FS=2.63;HRun=0;HaplotypeScore=2.5257;MQ=59.68;MQ0=0;MQRankSum=0.19;QD=8.12;ReadPosRankSum=-1.198;SNPEFF_AMINO_ACID_CHANGE=S23A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_99690275_99690496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:99,45:144:99:1199,0,3199
11    99690428    rs7125822    T    G    982.86    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=148;Dels=0.0;FS=3.454;HRun=0;HaplotypeScore=2.8986;MQ=57.85;MQ0=0;MQRankSum=-1.608;QD=6.64;ReadPosRankSum=-0.784;SNPEFF_AMINO_ACID_CHANGE=L70R;SNPEFF_CODON_CHANGE=cTa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_99690275_99690496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:108,40:148:99:1013,0,3555
11    99690461    rs10893933    A    G    406.18    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.686;DB;DP=118;Dels=0.0;FS=19.981;HRun=0;HaplotypeScore=1.9761;MQ=56.88;MQ0=0;MQRankSum=-4.001;QD=3.44;ReadPosRankSum=-3.906;SNPEFF_AMINO_ACID_CHANGE=N81S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_99690275_99690496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:90,28:118:99:436,0,2920
11    99786644    rs78779843    T    A    65.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=7.27;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:6,3:9:95.38:95,0,224
11    99827810    rs140553641    G    GT    423.12    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.339;DB;DP=28;FS=0.0;HRun=10;HaplotypeScore=69.2502;IndelType=I;MQ=60.39;MQ0=0;MQRankSum=0.778;QD=15.11;ReadPosRankSum=-1.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:10,17:28:99:462,0,147
11    99827959    rs12574821    A    G    93.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
11    99872630    rs72994870    A    G    198.28    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=10.44;ReadPosRankSum=-1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:11,8:19:99:228,0,405
11    99931743    rs10791139    T    C    63.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.358;QD=12.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:2,3:5:58.10:94,0,58
11    99941322    rs2059014    C    T    1286.13    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.924;DB;DP=96;Dels=0.0;FS=7.372;HRun=1;HaplotypeScore=3.8867;MQ=59.23;MQ0=0;MQRankSum=-0.095;QD=13.4;ReadPosRankSum=-1.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:54,42:96:99:1316,0,1521
11    99942748    rs10791145    C    T    68.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.82;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:4,3:7:86.78:99,0,87
11    100061827    rs5794042    G    GA    976.25    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.432;DB;DP=71;FS=0.0;HRun=9;HaplotypeScore=206.5254;IndelType=I;MQ=59.81;MQ0=0;MQRankSum=-0.313;QD=13.75;ReadPosRankSum=-1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:34,36:71:99:1015,0,492
11    100095716    rs1939699    C    G    548.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:581,42,0
11    100126394    rs2298472    G    A    441.78    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.407;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.606;QD=12.27;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:20,16:36:99:472,0,563
11    100168289    rs1944178    C    T    383    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.528;QD=18.24;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:9,12:21:99:413,0,268
11    100168320    rs4143639    T    TC    752.66    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=0.971;DB;DP=37;FS=2.126;HRun=0;HaplotypeScore=122.2928;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.016;QD=20.34;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:17,20:37:99:792,0,563
11    100169708    rs1944179    T    G    59.82    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.95;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:90,0,30
11    100169829    rs1944180    A    G    534.63    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.194;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6219;MQ=59.44;MQ0=0;MQRankSum=1.264;QD=13.04;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:22,19:41:99:565,0,767
11    100211032    rs12289431    T    G    55.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.11;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:6,3:9:85:85,0,211
11    100221824    rs534684    A    G    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
11    100226773    rs10894795    A    G    943.68    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.534;DB;DP=67;Dels=0.0;FS=2.647;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.518;QD=14.08;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279463    GT:AD:DP:GQ:PL    0/1:32,35:67:99:974,0,1009
11    100784127    rs641948    G    A    278.73    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=3.533;DB;DP=34;Dels=0.0;FS=10.572;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.897;QD=8.2;ReadPosRankSum=1.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:23,11:34:99:309,0,583
11    100804088    rs626529    A    G    375.89    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.366;QD=13.42;ReadPosRankSum=1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:13,15:28:99:406,0,382
11    100807130    rs581921    T    C    592.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.937;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.654;QD=14.11;ReadPosRankSum=-2.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:21,21:42:99:623,0,640
11    100812751    rs693760    T    C    222.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.32;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.675;QD=10.61;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:12,9:21:99:253,0,436
11    100814409    rs619066    G    A    728.76    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.385;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.931;QD=20.24;ReadPosRankSum=1.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:15,21:36:99:759,0,462
11    100814609    rs618155    G    T    1118.16    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.333;DB;DP=90;Dels=0.0;FS=6.998;HRun=2;HaplotypeScore=1.665;MQ=59.74;MQ0=0;MQRankSum=-1.458;QD=12.42;ReadPosRankSum=1.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:49,41:90:99:1148,0,1452
11    100819098    rs11300533    CT    C    102.56    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.259;DB;DP=14;FS=0.0;HRun=7;HaplotypeScore=41.0009;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.968;QD=7.33;ReadPosRankSum=-1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:8,6:14:99:142,0,259
11    100819305    rs633967    T    C    491.93    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.425;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.019;QD=14.91;ReadPosRankSum=-0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531183    GT:AD:DP:GQ:PL    0/1:14,19:33:99:522,0,445
11    100819392    rs504081    A    G    167.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.683;QD=18.6;ReadPosRankSum=-2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531183    GT:AD:DP:GQ:PL    0/1:3,6:9:99:197,0,100
11    100820725    rs694556    A    T    353.21    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.892;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.139;QD=15.36;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531183    GT:AD:DP:GQ:PL    0/1:11,12:23:99:383,0,384
11    100830579    rs6590829    G    A    637.93    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=3.457;DB;DP=53;Dels=0.0;FS=14.753;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.009;QD=12.04;ReadPosRankSum=0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:31,22:53:99:668,0,920
11    100830693    rs563460    T    C    730.83    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DB;DP=65;Dels=0.0;FS=1.045;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.94;QD=11.24;ReadPosRankSum=-2.773;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:32,33:65:99:761,0,1096
11    100830780    rs6590830    A    G    551.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.054;QD=20.44;ReadPosRankSum=-1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:9,18:27:99:582,0,291
11    100830817    rs6590831    G    A    230.83    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.296;QD=23.08;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298815    GT:AD:DP:GQ:PL    0/1:3,7:10:88.15:261,0,88
11    100922404    rs578029    A    T    311.61    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.79;QD=19.48;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263463    GT:AD:DP:GQ:PL    0/1:6,10:16:99:342,0,197
11    100998623    rs1379130    G    A    212.04    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.118;QD=19.28;ReadPosRankSum=-1.061;SNPEFF_AMINO_ACID_CHANGE=G393;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_100998165_100999801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263463    GT:AD:DP:GQ:PL    0/1:2,9:11:46.88:242,0,47
11    101323770    rs12805398    C    T    1191.29    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.142;DB;DP=102;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.538;MQ=59.53;MQ0=0;MQRankSum=-0.786;QD=11.68;ReadPosRankSum=-1.098;SNPEFF_AMINO_ACID_CHANGE=Q788;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_101323686_101323837;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348423    GT:AD:DP:GQ:PL    0/1:59,43:102:99:1221,0,1931
11    101323856    rs10570417    TAAG    T    672.10    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=4.961;DB;DP=48;FS=1.608;HRun=0;HaplotypeScore=197.3436;IndelType=D;MQ=56.85;MQ0=0;MQRankSum=-1.07;QD=14.0;ReadPosRankSum=-0.979;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532184    GT:AD:DP:GQ:PL    0/1:30,18:48:99:711,0,1794
11    101344177    rs12362848    G    A    366.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.493;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.03;MQ0=0;MQRankSum=-1.357;QD=15.28;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344327    GT:AD:DP:GQ:PL    0/1:12,12:24:99:397,0,336
11    101344699    rs7948300    A    G    36.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.06;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344327    GT:AD:DP:GQ:PL    0/1:4,2:6:66.35:66,0,128
11    101347093    rs12366144    A    G    994.17    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.973;DB;DP=69;Dels=0.0;FS=0.957;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=14.41;ReadPosRankSum=1.938;SNPEFF_AMINO_ACID_CHANGE=N445;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_101347032_101347265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348423    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1024,0,844
11    101359750    rs36111323    G    A    849.21    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.009;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.115;QD=12.31;ReadPosRankSum=2.021;SNPEFF_AMINO_ACID_CHANGE=A404V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_101359668_101359832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344327    GT:AD:DP:GQ:PL    0/1:38,31:69:99:879,0,1194
11    101362164    rs149519109    CA    C    174.85    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=1.5;DB;DP=36;FS=0.0;HRun=13;HaplotypeScore=124.7204;IndelType=D;MQ=57.03;MQ0=0;MQRankSum=0.56;QD=4.86;ReadPosRankSum=1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344327    GT:AD:DP:GQ:PL    0/1:22,13:36:99:214,0,426
11    101374626    rs4542378    G    A    217.55    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.603;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-1.135;QD=9.89;ReadPosRankSum=-0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526713    GT:AD:DP:GQ:PL    0/1:13,9:22:99:248,0,463
11    101375549    rs10501986    T    C    852.72    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.56;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9092;MQ=59.58;MQ0=0;MQRankSum=-0.193;QD=15.5;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344327    GT:AD:DP:GQ:PL    0/1:26,29:55:99:883,0,716
11    101375615    rs10501981    C    G    369.89    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.95;MQ0=0;MQRankSum=-0.2;QD=16.81;ReadPosRankSum=-0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344327    GT:AD:DP:GQ:PL    0/1:9,13:22:99:400,0,310
11    101454192    rs3802829    G    A    51.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.1;SNPEFF_AMINO_ACID_CHANGE=P15S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_101454065_101454659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344327    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
11    101574245    rs61918184    C    T    141.38    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.12;MQ0=0;QD=28.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526713    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:174,15,0
11    101771248    rs3858418    G    A    1726.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=R127W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_101771161_101771281;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPTL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534527    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1760,129,0
11    101771381    rs3858419    G    A    432.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334289    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:466,36,0
11    101775663    rs1661409    G    A    842.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPTL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334289    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:876,66,0
11    101778710    rs1661410    A    G    366.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=26.15;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_101778545_101778732;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPTL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334289    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:399,30,0
11    101818728    rs11225080    A    G    1209.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1377;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263468    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1243,93,0
11    101832478    rs7926728    G    T    1094.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.03;FS=0.0;HRun=3;HaplotypeScore=1.8824;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_AMINO_ACID_CHANGE=G238C;SNPEFF_CODON_CHANGE=Ggt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_101832472_101834611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1377;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263468    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1127,90,0
11    101833644    rs7109233    C    T    1619.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_AMINO_ACID_CHANGE=T427;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_101832472_101834611;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1377;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537689    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1653,120,0
11    101848990    rs3740931    A    G    2580.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1377;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263468    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2613,190,0
11    101857758    rs6590942    G    A    1561.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=59.72;MQ0=0;QD=35.49;SNPEFF_AMINO_ACID_CHANGE=S1077N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_101857563_101857772;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1377;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263468    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1594,117,0
11    101863706    rs1274901    C    T    214.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1377;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263468    GT:AD:DP:GQ:PL    1/1:0,8:8:21.02:247,21,0
11    101868415    rs1783742    C    T    2981.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.48;MQ0=0;QD=33.88;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1377;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263468    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3015,226,0
11    101918686    rs7934495    A    C    183.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393209    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:217,18,0
11    101929900    rs10750626    T    C    62.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393209    GT:AD:DP:GQ:PL    0/1:1,3:4:28.63:93,0,29
11    101984718    rs2033082    A    G    77.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=7.8;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282441    GT:AD:DP:GQ:PL    0/1:6,4:10:99:108,0,219
11    102080325    rs35731181    GA    G    265.06    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=73;FS=6.769;HRun=15;HaplotypeScore=356.4226;IndelType=D;MQ=58.04;MQ0=0;MQRankSum=-0.086;QD=3.63;ReadPosRankSum=0.726;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282441    GT:AD:DP:GQ:PL    0/1:43,25:73:99:304,0,293
11    102269397    rs5794169    AG    A    221.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=16.9506;IndelType=D;MQ=63.02;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525577    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:264,21,0
11    102269738    rs75055689    G    T    272.56    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;MQRankSum=-0.337;QD=16.03;ReadPosRankSum=-1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525577    GT:AD:DP:GQ:PL    0/1:8,9:17:99:303,0,272
11    102269743    rs12269847    G    C    212.55    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.324;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.45;MQ0=0;MQRankSum=0.556;QD=14.17;ReadPosRankSum=-1.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525577    GT:AD:DP:GQ:PL    0/1:7,8:15:99:243,0,241
11    102272277    rs12275185    G    T    844.32    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=48;Dels=0.0;FS=4.148;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.178;QD=17.59;ReadPosRankSum=0.972;SNPEFF_AMINO_ACID_CHANGE=R111;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102272270_102272423;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM123;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528969    GT:AD:DP:GQ:PL    0/1:20,28:48:99:874,0,606
11    102272460    rs139978855    AT    A    193.02    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=2.464;DB;DP=37;FS=0.0;HRun=13;HaplotypeScore=149.0465;IndelType=D;MQ=58.74;MQ0=0;MQRankSum=-0.268;QD=5.22;ReadPosRankSum=0.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525577    GT:AD:DP:GQ:PL    0/1:24,13:37:99:232,0,271
11    102272839    rs11547915    C    A    594.32    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=45;Dels=0.0;FS=4.388;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.082;QD=13.21;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=V44F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102272830_102272937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM123;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526676    GT:AD:DP:GQ:PL    0/1:23,22:45:99:624,0,756
11    102323377    rs10895296    A    G    38.48    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=5.5;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525577    GT:AD:DP:GQ:PL    0/1:4,3:7:68.47:68,0,144
11    102391425    rs14983    G    A    238.57    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.409;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.78;MQ0=0;MQRankSum=0.367;QD=12.56;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533366    GT:AD:DP:GQ:PL    0/1:10,9:19:99:269,0,306
11    102394291    rs11225304    G    A    33.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.64;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531200    GT:AD:DP:GQ:PL    0/1:4,2:6:63.82:64,0,153
11    102398433    rs3216144    C    CT    522.78    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=5.445;DB;DP=52;FS=1.151;HRun=0;HaplotypeScore=178.553;IndelType=I;MQ=59.77;MQ0=0;MQRankSum=-0.889;QD=10.05;ReadPosRankSum=-1.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260227    GT:AD:DP:GQ:PL    0/1:35,17:52:99:562,0,1266
11    102398593    rs10502001    C    T    801.21    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.02;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.849;MQ=59.65;MQ0=0;MQRankSum=0.399;QD=12.14;ReadPosRankSum=0.629;SNPEFF_AMINO_ACID_CHANGE=R77H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102398488_102398714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260227    GT:AD:DP:GQ:PL    0/1:37,29:66:99:831,0,1120
11    102398729    rs17881703    G    A    429.26    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.995;DB;DP=27;Dels=0.0;FS=2.251;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=15.9;ReadPosRankSum=0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260227    GT:AD:DP:GQ:PL    0/1:13,14:27:99:459,0,450
11    102448256    rs2292730    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    102449650    rs7934921    T    A    250.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
11    102449931    rs10502004    T    C    310.58    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.27;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.006;QD=12.42;ReadPosRankSum=-0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    0/1:13,12:25:99:341,0,469
11    102449951    rs1940054    A    C    646.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:679,51,0
11    102464451    rs1784440    C    T    111.36    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=12.37;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544938    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,109
11    102477132    rs1784425    A    C    40.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:71,0,24
11    102477377    rs1784424    G    T    372.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=35;Dels=0.0;FS=7.555;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.217;QD=10.63;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=T281N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102477266_102477407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    0/1:20,15:35:99:402,0,676
11    102477395    rs1784423    A    G    456.18    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=3.642;DB;DP=34;Dels=0.0;FS=3.108;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.347;QD=13.42;ReadPosRankSum=0.902;SNPEFF_AMINO_ACID_CHANGE=V275A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102477266_102477407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    0/1:19,15:34:99:486,0,566
11    102479549    rs1711420    T    C    328.34    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=3.26;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.12;MQ0=0;MQRankSum=1.449;QD=18.24;ReadPosRankSum=-0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    0/1:7,11:18:99:358,0,212
11    102479555    rs1711419    T    C    776.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.85;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    1/1:0,24:24:63.15:809,63,0
11    102482738    rs1711416    G    A    90.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=9.04;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    0/1:6,4:10:99:120,0,216
11    102495712    rs2509022    C    A    249.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
11    102495718    rs2459476    G    C    299.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:333,24,0
11    102495745    rs2509023    C    T    427.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:460,36,0
11    102495998    rs2245803    T    G    949.15    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.698;DB;DP=67;Dels=0.0;FS=1.298;HRun=0;HaplotypeScore=0.8321;MQ=59.03;MQ0=0;MQRankSum=-0.032;QD=14.17;ReadPosRankSum=0.032;SNPEFF_AMINO_ACID_CHANGE=K18T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102495925_102496063;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260228    GT:AD:DP:GQ:PL    0/1:37,30:67:99:979,0,1156
11    102562700    rs2509010    C    T    631.84    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.421;DB;DP=41;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=15.41;ReadPosRankSum=-0.874;SNPEFF_AMINO_ACID_CHANGE=D447N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102562218_102562741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:21,20:41:99:662,0,627
11    102563739    rs1276289    C    T    1462.86    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=145;Dels=0.0;FS=4.459;HRun=0;HaplotypeScore=3.5405;MQ=59.68;MQ0=0;MQRankSum=0.598;QD=10.09;ReadPosRankSum=0.313;SNPEFF_AMINO_ACID_CHANGE=G409;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102563669_102563772;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:90,54:145:99:1493,0,2492
11    102565856    rs10895351    A    T    405.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.613;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.29;QD=13.51;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:15,15:30:99:435,0,463
11    102567207    rs1276286    T    A    486.61    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.996;DB;DP=37;Dels=0.0;FS=1.423;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.349;QD=13.15;ReadPosRankSum=0.761;SNPEFF_AMINO_ACID_CHANGE=E266V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102567102_102567222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:20,17:37:99:517,0,589
11    102567626    rs1940480    C    G    216.58    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=7.16;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=16.66;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:6,7:13:99:247,0,204
11    102573317    rs2845675    C    A    805.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:838,63,0
11    102573396    rs2701994    C    G    2661.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2694,202,0
11    102573569    rs3809018    C    A    1647.59    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=1.839;DB;DP=93;Dels=0.0;FS=3.308;HRun=1;HaplotypeScore=0.9469;MQ=59.45;MQ0=0;MQRankSum=-0.61;QD=17.72;ReadPosRankSum=0.437;SNPEFF_AMINO_ACID_CHANGE=V178;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102573484_102573612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:40,53:93:99:1678,0,1233
11    102573912    rs61893941    C    T    232.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=18;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.971;QD=12.93;ReadPosRankSum=-0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:9,9:18:99:263,0,274
11    102575618    rs2846363    G    A    291.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=57.0;MQ0=0;QD=24.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:325,30,0
11    102576358    rs2846707    T    C    1392.48    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.021;DB;DP=110;Dels=0.0;FS=1.597;HRun=0;HaplotypeScore=3.3445;MQ=58.35;MQ0=0;MQRankSum=2.488;QD=12.66;ReadPosRankSum=0.253;SNPEFF_AMINO_ACID_CHANGE=M30V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102576344_102576537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:60,50:110:99:1422,0,1725
11    102576375    rs1939015    G    A    3832.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.3115;MQ=58.21;MQ0=0;QD=33.33;SNPEFF_AMINO_ACID_CHANGE=T24M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102576344_102576537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3833,280,0
11    102576468    rs11225389    C    A    1039.30    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.684;DB;DP=62;Dels=0.0;FS=8.813;HRun=0;HaplotypeScore=2.5061;MQ=58.88;MQ0=0;MQRankSum=0.296;QD=16.76;ReadPosRankSum=0.423;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_102576344_102576537;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260229    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1069,0,904
11    102584023    rs1939018    T    A    1035.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=38.34;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236826    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1068,78,0
11    102584466    rs34470756    G    GT    534.93    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.499;DB;DP=44;FS=3.432;HRun=9;HaplotypeScore=109.1935;IndelType=I;MQ=59.72;MQ0=0;MQRankSum=-0.509;QD=12.16;ReadPosRankSum=0.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236826    GT:AD:DP:GQ:PL    0/1:23,21:44:99:574,0,398
11    102584607    rs2509013    T    C    1026.54    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.177;DB;DP=56;Dels=0.0;FS=3.147;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=18.33;ReadPosRankSum=-0.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236826    GT:AD:DP:GQ:PL    0/1:20,36:56:99:1057,0,549
11    102591994    rs1892886    A    T    71.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.2;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531168    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,128
11    102592049    rs113713628    T    TTGTG    449.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=16;FS=3.123;HRun=0;HaplotypeScore=115.0652;IndelType=I;MQ=53.09;MQ0=0;MQRankSum=2.163;QD=28.12;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531168    GT:AD:DP:GQ:PL    0/1:3,7:16:99:489,0,101
11    102592590    rs17099443    G    C    53.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=8.92;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531168    GT:AD:DP:GQ:PL    0/1:3,3:6:83.54:84,0,107
11    102593248    rs1940475    T    C    436.44    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.233;DB;DP=50;Dels=0.0;FS=6.436;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=8.73;ReadPosRankSum=0.515;SNPEFF_AMINO_ACID_CHANGE=K22E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102593160_102593404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534942    GT:AD:DP:GQ:PL    0/1:32,18:50:99:466,0,946
11    102595413    rs11225394    C    T    1849.93    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.78;DB;DP=121;Dels=0.0;FS=2.964;HRun=0;HaplotypeScore=0.734;MQ=59.81;MQ0=0;MQRankSum=-0.163;QD=15.29;ReadPosRankSum=1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236826    GT:AD:DP:GQ:PL    0/1:65,56:121:99:1880,0,2219
11    102595492    rs3765620    G    A    3820.88    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=250;DS;Dels=0.0;FS=10.122;HRun=1;HaplotypeScore=0.9159;MQ=59.74;MQ0=0;MQRankSum=0.863;QD=15.28;ReadPosRankSum=-1.393;SNPEFF_AMINO_ACID_CHANGE=T32I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102595485_102595685;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000236826    GT:AD:DP:GQ:PL    0/1:124,126:250:99:3821,0,3801
11    102595666    rs2155052    C    G    2059.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_102595485_102595685;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236826    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2093,154,0
11    102641382    rs470168    G    A    65.74    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.22;ReadPosRankSum=-0.684;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279441    GT:AD:DP:GQ:PL    0/1:5,3:8:95.73:96,0,188
11    102641452    rs470171    G    C    85.12    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=7.74;ReadPosRankSum=1.246;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279441    GT:AD:DP:GQ:PL    0/1:7,4:11:99:115,0,245
11    102642716    rs17860997    A    AT    767.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=36.1541;IndelType=I;MQ=59.36;MQ0=0;QD=40.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279441    GT:AD:DP:GQ:PL    1/1:2,17:19:54.18:810,54,0
11    102643894    rs547561    C    T    256.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279441    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
11    102647310    rs470154    T    G    1237.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539681    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1270,93,0
11    102649543    rs470277    T    A    771.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279441    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:805,63,0
11    102649856    rs470263    T    C    413.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279441    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:447,33,0
11    102661099    rs470215    T    C    476.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315274    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:510,39,0
11    102661595    rs470747    A    G    364.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315274    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:397,30,0
11    102663476    rs17884110    A    AG    2664.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.0;HRun=1;HaplotypeScore=367.9797;IndelType=I;MQ=60.05;MQ0=0;QD=41.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315274    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2707,196,0
11    102666043    rs491152    A    G    1193.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315274    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1227,90,0
11    102666316    rs470558    T    C    714.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=A216;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102666183_102666338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315274    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:747,60,0
11    102668603    rs33979725    CA    C    128.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=14;HaplotypeScore=47.4327;IndelType=D;MQ=57.66;MQ0=0;QD=12.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315274    GT:AD:DP:GQ:PL    1/1:1,8:10:25.84:170,26,0
11    102668702    rs470358    T    C    983.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315274    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1016,75,0
11    102707339    rs639752    C    A    884.52    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.379;QD=11.34;ReadPosRankSum=0.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299855    GT:AD:DP:GQ:PL    0/1:46,32:78:99:915,0,1319
11    102707914    rs575027    A    G    147.56    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.59;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299855    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:178,0,24
11    102709425    rs520540    A    G    524.05    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.972;DB;DP=39;Dels=0.0;FS=1.511;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=13.44;ReadPosRankSum=0.859;SNPEFF_AMINO_ACID_CHANGE=A362;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102709282_102709441;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299855    GT:AD:DP:GQ:PL    0/1:21,18:39:99:554,0,686
11    102711338    rs591058    T    C    771.33    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.084;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.615;QD=14.83;ReadPosRankSum=0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524478    GT:AD:DP:GQ:PL    0/1:21,31:52:99:801,0,623
11    102713046    rs3020919    C    T    479.24    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.37;DB;DP=35;Dels=0.0;FS=7.847;HRun=0;HaplotypeScore=0.0;MQ=57.31;MQ0=0;MQRankSum=-0.776;QD=13.69;ReadPosRankSum=-1.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299855    GT:AD:DP:GQ:PL    0/1:18,17:35:99:509,0,596
11    102713135    rs71706546    C    CT    130.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=59;FS=3.104;HRun=24;HaplotypeScore=604.4087;IndelType=I;MQ=36.93;MQ0=0;MQRankSum=-0.942;QD=2.14;ReadPosRankSum=-2.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299855    GT:AD:DP:GQ:PL    1/1:44,6:59:22.21:173,22,0
11    102713447    rs41380244    G    C    215.81    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.378;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.711;QD=6.54;ReadPosRankSum=0.468;SNPEFF_AMINO_ACID_CHANGE=T102;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102713403_102713647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299855    GT:AD:DP:GQ:PL    0/1:23,10:33:99:246,0,787
11    102713465    rs602128    A    G    193.33    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.719;DB;DP=31;Dels=0.0;FS=1.688;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.544;QD=6.24;ReadPosRankSum=0.588;SNPEFF_AMINO_ACID_CHANGE=D96;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102713403_102713647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299855    GT:AD:DP:GQ:PL    0/1:22,9:31:99:223,0,771
11    102713620    rs679620    T    C    129.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.574;DB;DP=21;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.231;QD=6.16;ReadPosRankSum=-2.201;SNPEFF_AMINO_ACID_CHANGE=K45E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102713403_102713647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299855    GT:AD:DP:GQ:PL    0/1:14,7:21:99:159,0,448
11    102735103    rs476185    A    G    606.41    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=2.879;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8633;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=14.1;ReadPosRankSum=2.296;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MMP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326227    GT:AD:DP:GQ:PL    0/1:21,22:43:99:636,0,731
11    102738499    rs632009    C    T    296.86    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.929;QD=22.84;ReadPosRankSum=1.312;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MMP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326227    GT:AD:DP:GQ:PL    0/1:4,9:13:99:327,0,121
11    102738793    rs5794199    G    GT    1437    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=1;HaplotypeScore=224.9084;IndelType=I;MQ=61.37;MQ0=0;QD=37.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MMP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326227    GT:AD:DP:GQ:PL    1/1:1,37:38:99:1479,109,0
11    102824826    rs478927    T    C    796.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260302    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:830,60,0
11    102825091    rs640198    T    G    805.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260302    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:839,63,0
11    102826539    rs2252070    C    T    451.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260302    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:484,36,0
11    102985018    rs2245404    A    G    390.57    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.33;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.655;QD=12.6;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:17,14:31:99:421,0,581
11    102985708    rs2513991    T    C    33.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.29;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:63,0,70
11    102991516    rs116888435    A    G    692.02    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.523;DB;DP=59;Dels=0.0;FS=1.053;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=11.73;ReadPosRankSum=0.733;SNPEFF_AMINO_ACID_CHANGE=Q411;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_102991418_102991531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:35,24:59:99:722,0,1121
11    103004929    rs2450918    C    G    133.62    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=12.15;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:5,6:11:99:164,0,169
11    103013954    rs2514006    G    T    487.88    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.63;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.268;QD=7.62;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:44,20:64:99:518,0,1530
11    103019443    rs2514000    C    G    83.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.9;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:114,0,30
11    103022842    rs35040012    G    GTT    360.93    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=28;FS=2.84;HRun=13;HaplotypeScore=160.6857;IndelType=I;MQ=60.29;MQ0=0;MQRankSum=0.481;QD=12.89;ReadPosRankSum=0.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:10,11:28:99:400,0,150
11    103026040    rs5794210    CT    C    170.56    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=22;FS=2.831;HRun=12;HaplotypeScore=101.6461;IndelType=D;MQ=58.95;MQ0=0;MQRankSum=0.555;QD=7.75;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:8,11:22:99:210,0,130
11    103029373    rs688094    G    A    142.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.968;QD=10.16;ReadPosRankSum=-1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:8,6:14:99:172,0,213
11    103029516    rs688906    A    G    34.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.95;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=K1413R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103029406_103029538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375735    GT:AD:DP:GQ:PL    0/1:3,2:5:64.76:65,0,110
11    103033914    rs657936    A    T    791.92    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.725;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.435;QD=12.0;ReadPosRankSum=-0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:39,27:66:99:822,0,1354
11    103047007    rs585692    C    A    142.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=15.8;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=T1906;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103046964_103047163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375735    GT:AD:DP:GQ:PL    0/1:4,5:9:99:172,0,139
11    103049638    rs634384    T    C    34.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.6;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:1,2:3:34.29:65,0,34
11    103050028    rs632672    A    G    273.75    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.072;QD=9.78;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:18,10:28:99:304,0,676
11    103057048    rs658804    A    G    752.65    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.41;DB;DP=52;Dels=0.0;FS=1.104;HRun=1;HaplotypeScore=1.9667;MQ=59.11;MQ0=0;MQRankSum=-0.623;QD=14.47;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=R2237;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103056971_103057230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375735    GT:AD:DP:GQ:PL    0/1:27,25:52:99:783,0,850
11    103058126    rs586592    C    T    912.87    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.996;DB;DP=76;Dels=0.0;FS=7.832;HRun=1;HaplotypeScore=0.8941;MQ=59.39;MQ0=0;MQRankSum=0.282;QD=12.01;ReadPosRankSum=0.293;SNPEFF_AMINO_ACID_CHANGE=H2317;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103058069_103058315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375735    GT:AD:DP:GQ:PL    0/1:42,34:76:99:943,0,1298
11    103060309    rs617059    A    G    166.30    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=23.76;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:1,6:7:20.70:196,0,21
11    103074349    rs631712    C    T    557.83    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.768;DB;DP=39;Dels=0.0;FS=9.746;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.098;QD=14.3;ReadPosRankSum=-0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:19,20:39:99:588,0,689
11    103074639    rs613978    C    A    140.86    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.81;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:6,5:11:99:171,0,205
11    103074658    rs633030    A    G    31.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.56;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:5,2:7:61.92:62,0,178
11    103082590    rs589623    G    A    901.55    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.527;DB;DP=55;Dels=0.0;FS=1.162;HRun=1;HaplotypeScore=3.6635;MQ=59.16;MQ0=0;MQRankSum=1.631;QD=16.39;ReadPosRankSum=3.237;SNPEFF_AMINO_ACID_CHANGE=R2871Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103082518_103082672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375735    GT:AD:DP:GQ:PL    0/1:25,30:55:99:932,0,668
11    103086381    rs679691    G    T    137.06    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.099;QD=9.14;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:8,7:15:99:167,0,254
11    103086399    rs78873690    G    GTA    601.52    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.401;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=105.228;IndelType=I;MQ=58.58;MQ0=0;MQRankSum=0.2;QD=23.14;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:12,13:26:99:641,0,334
11    103086725    rs635193    C    G    368.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.347;QD=18.44;ReadPosRankSum=-1.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533027    GT:AD:DP:GQ:PL    0/1:8,12:20:99:399,0,260
11    103090885    rs637923    G    A    218.52    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.791;QD=16.81;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533027    GT:AD:DP:GQ:PL    0/1:6,7:13:99:249,0,211
11    103091237    rs636510    A    G    768.64    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.553;QD=19.22;ReadPosRankSum=-0.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533027    GT:AD:DP:GQ:PL    0/1:14,26:40:99:799,0,450
11    103091546    rs670464    G    A    975.27    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.79;DB;DP=81;Dels=0.0;FS=8.455;HRun=0;HaplotypeScore=1.83;MQ=60.0;MQ0=0;MQRankSum=1.333;QD=12.04;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533027    GT:AD:DP:GQ:PL    0/1:49,31:81:99:1005,0,1624
11    103092572    rs657938    G    A    32.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.52;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:3,2:5:62.58:63,0,90
11    103092945    rs654061    A    G    333.02    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.823;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.38;QD=16.65;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:9,11:20:99:363,0,311
11    103092968    rs669940    C    T    236.82    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9977;MQ=58.71;MQ0=0;MQRankSum=-0.844;QD=13.16;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:8,10:18:99:267,0,279
11    103092981    rs669969    C    T    157.04    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=13.09;ReadPosRankSum=1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:5,7:12:99:187,0,168
11    103104930    rs1784259    C    A    635.74    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9332;MQ=58.74;MQ0=0;MQRankSum=1.087;QD=17.18;ReadPosRankSum=-1.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:15,22:37:99:666,0,454
11    103107393    rs623852    G    A    167.61    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=15.24;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:4,7:11:99:198,0,135
11    103107394    rs646556    C    A    165.58    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=15.05;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:4,7:11:99:196,0,123
11    103123999    rs648387    G    T    852.32    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=3.212;DB;DP=57;Dels=0.0;FS=2.67;HRun=8;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.216;QD=14.7;ReadPosRankSum=1.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:26,31:57:99:882,0,772
11    103124328    rs663457    T    C    171.70    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=13.21;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:6,7:13:99:202,0,210
11    103126296    rs633970    G    A    277.51    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.283;QD=21.35;ReadPosRankSum=-1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:2,11:13:53.89:308,0,54
11    103126666    rs600167    A    G    116.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:2,4:6:63.82:147,0,64
11    103126699    rs600202    G    T    134.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.668;QD=13.44;ReadPosRankSum=1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:5,5:10:99:164,0,173
11    103128510    rs650238    C    T    287.02    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=1.101;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=57.81;MQ0=0;MQRankSum=-0.202;QD=9.57;ReadPosRankSum=-1.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:19,11:30:99:317,0,590
11    103153768    .    C    T    1235.82    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.011;DP=75;Dels=0.0;FS=1.929;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.43;QD=16.48;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=P3615L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103153737_103153814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375735    GT:AD:DP:GQ:PL    0/1:35,40:75:99:1266,0,1014
11    103153863    rs598845    A    G    739.47    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.45;DB;DP=50;Dels=0.0;FS=10.075;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.17;QD=14.79;ReadPosRankSum=2.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:26,24:50:99:769,0,710
11    103156806    rs4754897    T    C    202.87    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.368;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.053;QD=11.93;ReadPosRankSum=-1.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:9,8:17:99:233,0,286
11    103158542    rs2512130    A    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525306    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
11    103173782    rs11225673    A    C    185.17    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=15.43;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:5,7:12:99:215,0,159
11    103173793    rs4754906    A    C    258.36    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.01;QD=15.2;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:8,9:17:99:288,0,277
11    103174000    rs11225674    C    T    839.77    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=3.866;DB;DP=108;Dels=0.0;FS=9.07;HRun=0;HaplotypeScore=0.9832;MQ=59.44;MQ0=0;MQRankSum=0.53;QD=7.78;ReadPosRankSum=-1.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:71,37:108:99:870,0,1950
11    103175289    rs11392425    G    GT    710.79    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.839;DB;DP=52;FS=0.0;HRun=5;HaplotypeScore=117.6336;IndelType=I;MQ=59.64;MQ0=0;MQRankSum=-0.578;QD=13.67;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:28,24:52:99:750,0,661
11    103175465    rs10690307    T    TGTG    2105.87    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.353;DB;DP=77;FS=0.946;HRun=0;HaplotypeScore=317.9526;IndelType=I;MQ=58.78;MQ0=0;MQRankSum=-1.032;QD=27.35;ReadPosRankSum=-0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:42,33:77:99:2145,0,1695
11    103175497    rs3758862    C    T    783.15    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.03;MQ0=0;MQRankSum=0.427;QD=15.36;ReadPosRankSum=0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:26,25:51:99:813,0,789
11    103175575    rs3758863    A    C    216.93    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.067;QD=24.1;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:2,7:9:54.79:247,0,55
11    103178339    rs7118015    C    T    154.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=19.33;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:3,5:8:99:185,0,101
11    103182774    rs79978663    C    A    1087.12    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.585;DB;DP=95;Dels=0.0;FS=4.52;HRun=2;HaplotypeScore=0.9894;MQ=59.51;MQ0=0;MQRankSum=0.873;QD=11.44;ReadPosRankSum=-1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:53,42:95:99:1117,0,1688
11    103187205    rs7103282    C    T    273.96    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.154;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.352;QD=11.91;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:13,10:23:99:304,0,428
11    103191672    rs4754913    G    T    287.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.247;QD=14.37;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:10,10:20:99:317,0,352
11    103192039    rs313407    T    C    1070.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    1/1:0,33:33:96.24:1103,96,0
11    103192089    rs313406    G    C    531.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:564,42,0
11    103229027    rs2566913    T    C    2661.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_AMINO_ACID_CHANGE=D19;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103228971_103229087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533197    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2695,193,0
11    103229110    rs2671333    G    A    2252.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2286,169,0
11    103229173    rs2514408    A    C    1094.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1128,93,0
11    103229188    rs2512128    G    C    895.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:929,69,0
11    103229238    rs2512129    G    A    281.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:314,24,0
11    103270607    rs10895417    G    A    971.27    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5767;MQ=59.23;MQ0=0;MQRankSum=0.44;QD=16.19;ReadPosRankSum=0.911;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:25,34:60:99:1001,0,796
11    103306594    rs501413    C    T    252.52    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.059;QD=15.78;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:7,9:16:99:283,0,244
11    103325800    rs313875    C    A    671.27    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.786;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=17.67;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:18,20:38:99:701,0,644
11    103326160    rs1384074    C    G    246.09    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.963;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.292;QD=12.3;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:11,9:20:99:276,0,380
11    103339246    rs3740942    G    A    1106.69    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.065;DB;DP=62;Dels=0.0;FS=1.467;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.568;QD=17.85;ReadPosRankSum=-0.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC2H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334267    GT:AD:DP:GQ:PL    0/1:27,35:62:99:1137,0,853
11    103780455    rs10791649    A    G    1311.15    PASS    AB=0.384;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.138;DB;DP=74;Dels=0.0;FS=0.919;HRun=0;HaplotypeScore=1.8928;MQ=60.0;MQ0=0;MQRankSum=-0.214;QD=17.72;ReadPosRankSum=0.306;SNPEFF_AMINO_ACID_CHANGE=C354;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103777917_103780547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302251    GT:AD:DP:GQ:PL    0/1:28,45:74:99:1341,0,801
11    103780610    rs4754997    C    T    716.89    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.199;DB;DP=44;Dels=0.0;FS=8.433;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.188;QD=16.29;ReadPosRankSum=1.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302251    GT:AD:DP:GQ:PL    0/1:21,23:44:99:747,0,553
11    103780695    rs4754998    G    A    125.08    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=8.34;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302251    GT:AD:DP:GQ:PL    0/1:10,5:15:99:155,0,354
11    103814453    rs78383143    G    A    144.53    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=12.04;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529268    GT:AD:DP:GQ:PL    0/1:7,5:12:99:175,0,208
11    103818344    rs11226083    G    C    375.50    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.136;DB;DP=25;Dels=0.0;FS=3.171;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.408;QD=15.02;ReadPosRankSum=0.734;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529268    GT:AD:DP:GQ:PL    0/1:13,12:25:99:405,0,458
11    103818395    rs35045740    T    C    504.14    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.553;DB;DP=43;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.95;QD=11.72;ReadPosRankSum=1.056;SNPEFF_AMINO_ACID_CHANGE=I184V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103818390_103818452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302251    GT:AD:DP:GQ:PL    0/1:26,17:43:99:534,0,723
11    103907302    rs34987759    A    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302251    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    103907956    rs7102675    G    A    1103.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_AMINO_ACID_CHANGE=G136S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103907308_103909922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302259    GT:AD:DP:GQ:PL    1/1:0,31:31:87.27:1136,87,0
11    103908735    rs1052313    G    A    650.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.24;SNPEFF_AMINO_ACID_CHANGE=E395;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_103907308_103909922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302259    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:683,51,0
11    104757836    rs5794352    T    TA    1213.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=1;HaplotypeScore=55.4255;IndelType=I;MQ=60.36;MQ0=0;QD=40.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:2,27:30:84.28:1256,84,0
11    104758035    rs484438    G    A    3433.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.78;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:0,102:103:99:3434,253,0
11    104758111    .    G    GA    781.99    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.852;DP=62;FS=3.371;HRun=8;HaplotypeScore=210.4788;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=12.61;ReadPosRankSum=-1.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    0/1:33,29:62:99:821,0,695
11    104761013    rs635846    T    G    190.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:223,18,0
11    104761100    rs513131    T    C    989.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=32.99;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000446862    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1023,75,0
11    104761206    rs647039    C    T    964.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=G154S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_104761101_104761250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508062    GT:AD:DP:GQ:PL    1/1:0,31:31:72.24:997,72,0
11    104761271    rs693506    A    C    636.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:0,22:22:48.16:669,48,0
11    104762228    rs544216    G    A    445.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:479,36,0
11    104762886    rs648264    C    A    302.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:336,24,0
11    104763117    rs497116    G    A    3210.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=R125*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_104763058_104763230;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3243,241,0
11    104767717    rs2845691    T    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    104768000    rs693001    G    A    3820.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=59.16;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=T68I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_104767944_104768195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:0,109:110:99:3820,280,0
11    104768098    rs555367    T    C    4357.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=V35;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_104767944_104768195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375726    GT:AD:DP:GQ:PL    1/1:1,127:128:99:4358,319,0
11    104819327    rs9507    T    C    1153.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=L230;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_104819260_104819403;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CASP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393150    GT:AD:DP:GQ:PL    1/1:0,35:35:90.26:1187,90,0
11    104820163    rs649739    A    C    441.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CASP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417440    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:475,36,0
11    104822032    rs620902    A    G    84.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CASP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531546    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
11    104839222    rs658560    A    G    2495.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7355;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CASP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417440    GT:AD:DP:GQ:PL    1/1:0,82:83:99:2528,199,0
11    104866461    rs540819    A    T    843.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CASP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456200    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:876,66,0
11    104869708    rs523104    G    C    1883.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=L192V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_104869612_104869755;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CASP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418434    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1916,141,0
11    104872981    rs544211    C    T    1033.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CASP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456094    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1067,84,0
11    104877717    rs2282658    C    G    431.64    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.043;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.218;QD=15.99;ReadPosRankSum=-0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CASP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260315    GT:AD:DP:GQ:PL    0/1:13,14:27:99:462,0,440
11    104877803    rs2282657    A    G    1294.80    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DB;DP=84;Dels=0.0;FS=3.538;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.77;QD=15.41;ReadPosRankSum=1.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CASP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260315    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1325,0,1357
11    104877927    rs507879    T    C    1494.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=102;Dels=0.0;FS=1.603;HRun=0;HaplotypeScore=2.3548;MQ=59.77;MQ0=0;MQRankSum=-1.098;QD=14.65;ReadPosRankSum=-0.709;SNPEFF_AMINO_ACID_CHANGE=T106A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_104877810_104878061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CASP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260315    GT:AD:DP:GQ:PL    0/1:51,51:102:99:1524,0,1538
11    104896844    rs1977989    A    G    90.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.02;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525825    GT:AD:DP:GQ:PL    0/1:2,4:6:63.24:120,0,63
11    104897437    rs2282659    A    G    72.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.32;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526511    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,146
11    104900658    .    A    G    625.66    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.204;DP=44;Dels=0.0;FS=3.029;HRun=0;HaplotypeScore=0.9665;MQ=59.05;MQ0=0;MQRankSum=0.758;QD=14.22;ReadPosRankSum=0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526511    GT:AD:DP:GQ:PL    0/1:25,19:44:99:656,0,832
11    104903984    rs570685    A    C    78.63    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.73;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353247    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:109,0,30
11    104914502    rs61890849    C    T    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527065    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,108
11    104914969    rs9326349    G    C    584.40    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.121;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.673;QD=16.7;ReadPosRankSum=0.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375704    GT:AD:DP:GQ:PL    0/1:16,19:35:99:614,0,518
11    104915563    rs10895763    T    C    180.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375704    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:214,18,0
11    104971210    rs1792771    C    T    2065.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525374    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2099,165,0
11    104971233    rs34491690    C    T    834.45    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-1.444;QD=12.27;ReadPosRankSum=-0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525374    GT:AD:DP:GQ:PL    0/1:37,31:68:99:864,0,1198
11    104971662    rs1785873    G    A    350.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525374    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:384,30,0
11    104971924    rs1699088    A    G    88.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525374    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
11    104972190    rs1792773    C    T    2958.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9705;MQ=59.8;MQ0=0;QD=31.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525374    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2991,223,0
11    105482888    .    T    G    157.61    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.474;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.7538;MQ=50.39;MQ0=0;MQRankSum=0.158;QD=12.12;ReadPosRankSum=1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282499    GT:AD:DP:GQ:PL    0/1:1,12:13:4.62:187,0,5
11    105482899    .    A    T    42.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=5.0796;MQ=51.77;MQ0=0;MQRankSum=0.406;QD=2.84;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282499    GT:AD:DP:GQ:PL    0/1:5,10:15:72.61:73,0,100
11    105836923    rs632549    G    A    374.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282499    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:407,30,0
11    105836960    rs1939826    A    G    83.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282499    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:114,0,30
11    105842916    rs559190    C    T    154.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539249    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
11    105844923    rs509512    C    A    430.52    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.584;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=17.22;ReadPosRankSum=1.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539249    GT:AD:DP:GQ:PL    0/1:12,13:25:99:461,0,388
11    105845404    rs72979245    T    C    143.89    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=20.56;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539249    GT:AD:DP:GQ:PL    0/1:2,5:7:45.28:174,0,45
11    105845421    rs593130    C    T    30.18    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.31;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539249    GT:AD:DP:GQ:PL    0/1:5,2:7:60.17:60,0,152
11    105850090    rs3758790    A    G    71.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.79;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282499    GT:AD:DP:GQ:PL    0/1:1,3:4:16.61:101,0,17
11    105961621    rs138293505    GTACT    G    282.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=35.3455;IndelType=D;MQ=54.75;MQ0=0;QD=40.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AASDHPPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278618    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:325,18,0
11    106408031    rs11279851    TCAAATG    T    2540.22    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=8.18;DB;DP=125;FS=9.8;HRun=0;HaplotypeScore=858.2432;IndelType=D;MQ=52.64;MQ0=0;MQRankSum=-7.955;QD=20.32;ReadPosRankSum=0.011;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:85,40:125:99:2579,0,8897
11    106408071    rs1791468    C    T    1353.64    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.522;DB;DP=153;Dels=0.0;FS=3.005;HRun=3;HaplotypeScore=6.2998;MQ=53.57;MQ0=0;MQRankSum=-7.11;QD=8.85;ReadPosRankSum=-1.56;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:97,56:153:99:1384,0,2952
11    106408212    rs2852371    A    G    872.26    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.65;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-2.481;QD=18.17;ReadPosRankSum=0.096;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:18,30:48:99:902,0,599
11    106408261    rs1791467    C    A    278.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=48.09;MQ0=0;MQRankSum=-2.143;QD=18.55;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,10:15:99:308,0,161
11    106579204    rs12420232    C    A    452.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=25;Dels=0.0;FS=4.873;HRun=2;HaplotypeScore=1.9979;MQ=60.0;MQ0=0;MQRankSum=0.954;QD=18.08;ReadPosRankSum=-1.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282249    GT:AD:DP:GQ:PL    0/1:10,15:25:99:482,0,231
11    106617490    rs12421303    C    T    103.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.31;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282249    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,212
11    106647222    rs34690080    G    A    446.75    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.162;DB;DP=42;Dels=0.0;FS=3.058;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=10.64;ReadPosRankSum=-1.011;SNPEFF_AMINO_ACID_CHANGE=A593;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_106647165_106647308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282249    GT:AD:DP:GQ:PL    0/1:23,19:42:99:477,0,753
11    106647511    rs1352315    T    A    75.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.12;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282249    GT:AD:DP:GQ:PL    0/1:2,3:5:59.62:106,0,60
11    106697172    rs61678754    T    C    934.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.24;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282249    GT:AD:DP:GQ:PL    1/1:0,30:30:78.21:967,78,0
11    106849400    rs35760785    G    A    1145.42    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.255;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9772;MQ=58.93;MQ0=0;MQRankSum=-0.007;QD=17.62;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=N144;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_106849345_106849466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282249    GT:AD:DP:GQ:PL    0/1:26,38:65:99:1175,0,789
11    106888608    rs3107973    G    A    95.97    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-1.545;QD=7.38;ReadPosRankSum=0.817;SNPEFF_AMINO_ACID_CHANGE=A58;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_106888479_106889171;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282249    GT:AD:DP:GQ:PL    0/1:8,5:13:99:126,0,271
11    107197536    rs630782    C    T    508.25    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.704;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=13.03;ReadPosRankSum=0.465;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWF19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282251    GT:AD:DP:GQ:PL    0/1:21,18:39:99:538,0,718
11    107197640    rs3758911    T    C    1729.96    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=126;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=1.6229;MQ=59.27;MQ0=0;MQRankSum=2.032;QD=13.73;ReadPosRankSum=0.63;SNPEFF_AMINO_ACID_CHANGE=Y894C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_107197071_107197779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWF19L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282251    GT:AD:DP:GQ:PL    0/1:61,65:126:99:1760,0,1880
11    107205426    rs10789620    C    T    34.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.92;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWF19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282251    GT:AD:DP:GQ:PL    0/1:4,3:7:64.40:64,0,147
11    107207566    rs10749903    T    C    112.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWF19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282251    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:145,12,0
11    107224225    rs4576794    G    A    860.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.746;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.178;QD=17.56;ReadPosRankSum=-0.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWF19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282251    GT:AD:DP:GQ:PL    0/1:21,28:49:99:891,0,611
11    107313608    .    G    GAGGAAGGA    1855.32    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.622;DP=39;FS=3.854;HRun=0;HaplotypeScore=251.86;IndelType=I;MQ=53.97;MQ0=0;MQRankSum=-1.487;QD=47.57;ReadPosRankSum=-0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWF19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282251    GT:AD:DP:GQ:PL    0/1:20,16:39:99:1894,0,854
11    107381533    rs655009    G    A    951.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389568    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:985,72,0
11    107381765    rs654093    G    A    2341.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389568    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2375,178,0
11    107402887    rs589316    G    A    729.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393100    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:763,57,0
11    107402995    rs589788    A    T    2609.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393100    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2643,208,0
11    107403202    rs35049996    TAG    T    963.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=101.2806;IndelType=D;MQ=58.26;MQ0=0;QD=38.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389568    GT:AD:DP:GQ:PL    1/1:1,24:25:69.23:1006,69,0
11    107420530    rs645056    A    G    1792.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.99;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.495;QD=30.91;ReadPosRankSum=-1.299;SNPEFF_AMINO_ACID_CHANGE=D240;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_107420479_107420549;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389568    GT:AD:DP:GQ:PL    1/1:2,56:58:99:1826,99,0
11    107462878    rs542650    A    C    72.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=9.1;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265840    GT:AD:DP:GQ:PL    0/1:4,4:8:99:103,0,141
11    107462977    rs5794560    G    GT    2671.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.0;HRun=2;HaplotypeScore=128.3826;IndelType=I;MQ=60.49;MQ0=0;QD=41.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265840    GT:AD:DP:GQ:PL    1/1:1,62:64:99:2714,190,0
11    107487322    rs35131078    C    T    68.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.73;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265840    GT:AD:DP:GQ:PL    0/1:2,3:5:64.51:99,0,65
11    107487329    rs35007435    G    A    80.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265840    GT:AD:DP:GQ:PL    0/1:2,3:5:58.06:111,0,58
11    107578721    rs583362    C    G    534.99    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.095;DB;DP=32;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=0.9894;MQ=59.42;MQ0=0;MQRankSum=-0.491;QD=16.72;ReadPosRankSum=-1.359;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_107578109_107578731;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305991    GT:AD:DP:GQ:PL    0/1:15,17:32:99:565,0,470
11    107799426    rs77818165    C    A    75.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=9.43;ReadPosRankSum=0.421;SNPEFF_AMINO_ACID_CHANGE=T44;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_107799229_107799521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320578    GT:AD:DP:GQ:PL    0/1:4,4:8:99:105,0,111
11    107833164    rs143032892    A    T    59.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.988;QD=9.96;ReadPosRankSum=0.988;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320578    GT:AD:DP:GQ:PL    0/1:3,3:6:89.74:90,0,104
11    107889292    rs10789650    G    T    87.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
11    107904646    rs10890800    C    T    390.36    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.175;DB;DP=20;Dels=0.0;FS=2.128;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.349;QD=19.52;ReadPosRankSum=1.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    0/1:5,15:20:99:420,0,116
11    107917087    rs7117111    A    G    524.48    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DB;DP=31;Dels=0.0;FS=3.846;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.25;QD=16.39;ReadPosRankSum=-0.853;SNPEFF_AMINO_ACID_CHANGE=Q75;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_107916997_107917096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    0/1:14,17:31:99:554,0,422
11    107925303    rs2271852    A    G    282.61    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.292;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.608;QD=14.13;ReadPosRankSum=-0.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    0/1:11,9:20:99:313,0,346
11    107925327    rs3847562    C    T    990.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1024,75,0
11    107925557    rs2271853    T    C    676.22    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=42;Dels=0.0;FS=4.257;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=16.1;ReadPosRankSum=-0.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    0/1:19,23:42:99:706,0,622
11    107949125    rs140221898    TATTAA    T    659.07    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.507;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=124.4009;IndelType=D;MQ=49.79;MQ0=0;MQRankSum=-1.986;QD=31.38;ReadPosRankSum=0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531843    GT:AD:DP:GQ:PL    0/1:9,12:21:99:698,0,591
11    107965262    rs12792042    G    A    239.40    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.376;QD=9.97;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    0/1:14,10:24:99:269,0,467
11    107965390    rs71488291    A    G    97.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=8.16;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    0/1:8,4:12:99:128,0,288
11    107969300    rs11302777    GT    G    219.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=18;HaplotypeScore=153.5467;IndelType=D;MQ=56.41;MQ0=0;QD=7.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393094    GT:AD:DP:GQ:PL    1/1:14,15:29:48.54:261,49,0
11    108014684    rs5794588    AC    A    157.38    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=78;FS=4.414;HRun=12;HaplotypeScore=579.9608;IndelType=D;MQ=48.74;MQ0=0;MQRankSum=0.193;QD=2.02;ReadPosRankSum=-0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531813    GT:AD:DP:GQ:PL    0/1:60,17:78:99:196,0,893
11    108043988    rs2070661    C    T    2940.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.102;QD=34.59;ReadPosRankSum=-1.406;SNPEFF_AMINO_ACID_CHANGE=V575I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_108042926_108044578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278612    GT:AD:DP:GQ:PL    1/1:1,84:85:99:2973,190,0
11    108057430    rs4753833    G    A    174.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525615    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
11    108059000    rs3781869    T    C    992.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=36.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525615    GT:AD:DP:GQ:PL    1/1:0,27:27:78.21:1025,78,0
11    108061379    rs659584    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278612    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    108093208    rs228589    A    T    569.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278612    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:602,45,0
11    108098459    rs2066734    TAA    T    4198.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DB;DP=90;FS=0.0;HRun=3;HaplotypeScore=325.726;IndelType=D;MQ=59.2;MQ0=0;MQRankSum=-1.421;QD=46.65;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:1,89:90:99:4199,207,0
11    108115360    rs34277877    AT    A    240.06    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.143;DB;DP=17;FS=0.0;HRun=11;HaplotypeScore=59.7412;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=-0.238;QD=14.12;ReadPosRankSum=0.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527891    GT:AD:DP:GQ:PL    0/1:3,13:17:17:279,0,17
11    108121410    rs34325032    C    CT    567.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.385;DB;DP=82;FS=1.71;HRun=15;HaplotypeScore=501.6201;IndelType=I;MQ=54.68;MQ0=0;MQRankSum=-0.291;QD=6.92;ReadPosRankSum=-0.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:32,40:82:6.79:608,7,0
11    108129657    rs672655    A    G    556.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525012    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:590,48,0
11    108137775    rs642496    T    A    175.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
11    108141701    rs651030    G    T    444.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:478,36,0
11    108143182    rs664677    C    T    298.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419286    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:331,24,0
11    108143456    rs1800057    C    G    423.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.486;DB;DP=40;Dels=0.0;FS=1.444;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.802;QD=10.6;ReadPosRankSum=-0.538;SNPEFF_AMINO_ACID_CHANGE=P1054R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_108143449_108143579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    0/1:24,16:40:99:454,0,848
11    108151707    rs3218681    T    TA    2070.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=2;HaplotypeScore=134.6485;IndelType=I;MQ=61.41;MQ0=0;QD=39.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2113,160,0
11    108155397    rs654005    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    108160275    rs191210833    T    C    314.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=17.49;ReadPosRankSum=-0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527805    GT:AD:DP:GQ:PL    0/1:8,10:18:99:345,0,274
11    108170271    rs1150203    G    A    207.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389511    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
11    108183167    rs659243    A    G    4178.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.59;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=N1983S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_108183138_108183225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:0,125:125:99:4179,310,0
11    108183413    rs34562960    ACT    A    267.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=29.4681;IndelType=D;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:2,7:9:21.07:309,21,0
11    108196712    rs3212322    CATT    C    227.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=29.514;IndelType=D;MQ=56.62;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:269,18,0
11    108203769    rs227059    G    A    170.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525537    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
11    108218196    rs227075    T    C    253.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:286,24,0
11    108224697    rs179108    G    A    1729.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.167;QD=35.29;ReadPosRankSum=-1.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:1,48:49:99:1762,135,0
11    108225483    rs664982    C    T    1789.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1822,132,0
11    108225661    rs664143    A    G    962.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278616    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:996,75,0
11    108256837    rs113995    A    T    921.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393084    GT:AD:DP:GQ:PL    1/1:0,26:26:72.20:954,72,0
11    108264068    rs137901968    G    A    683.69    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7046;MQ=59.6;MQ0=0;MQRankSum=1.749;QD=11.79;ReadPosRankSum=-0.3;SNPEFF_AMINO_ACID_CHANGE=H151Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_108263935_108264105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf65;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525729    GT:AD:DP:GQ:PL    0/1:34,23:57:99:714,0,1150
11    108340216    rs61913892    T    C    558.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323468    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:592,45,0
11    108345515    rs11374964    G    GA    2249    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=3;HaplotypeScore=98.0714;IndelType=I;MQ=60.63;MQ0=0;QD=45.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375648    GT:AD:DP:GQ:PL    1/1:2,47:49:99:2291,144,0
11    108352160    rs3901850    C    T    1064.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524787    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1097,81,0
11    108357137    rs74911261    G    A    472.27    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.399;DB;DP=38;Dels=0.0;FS=3.716;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.079;QD=12.43;ReadPosRankSum=-1.109;SNPEFF_AMINO_ACID_CHANGE=P144L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_108356884_108357167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323468    GT:AD:DP:GQ:PL    0/1:22,16:38:99:502,0,778
11    108361578    rs11212676    G    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323468    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
11    108380335    rs1943382    T    C    3162.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=N1779D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_108376159_108385602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXPH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443411    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3195,238,0
11    108463986    rs12791136    C    A    125.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXPH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265843    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
11    108535792    rs2306118    C    T    84.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_108535752_108536066;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322536    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
11    108536287    rs10789675    A    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322536    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
11    108563955    rs10789677    T    C    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322536    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
11    108722851    rs10890899    C    G    1316.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322536    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1349,99,0
11    108810878    rs146484153    A    G    73.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.51;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322536    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,147
11    110023628    rs665013    C    T    1963.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.67;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278590    GT:AD:DP:GQ:PL    1/1:1,56:57:99:1996,144,0
11    110023974    rs10749954    A    G    117.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=19.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278590    GT:AD:DP:GQ:PL    1/1:0,6:6:17.97:150,18,0
11    110023975    rs10749955    C    T    127.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278590    GT:AD:DP:GQ:PL    1/1:0,6:6:17.97:161,18,0
11    110024001    rs4754422    C    T    148.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278590    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
11    110024016    rs4754423    A    G    31.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=7.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278590    GT:AD:DP:GQ:PL    1/1:0,4:4:5.99:63,6,0
11    110030475    rs623236    A    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278590    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    110033860    rs11213287    T    C    96.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.11;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278590    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,145
11    110034941    rs685195    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278590    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    110103924    rs111354355    A    C    1353.23    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=2.932;DB;DP=82;Dels=0.0;FS=2.131;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=-0.29;QD=16.5;ReadPosRankSum=-2.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RDX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343115    GT:AD:DP:GQ:PL    0/1:36,46:82:99:1383,0,1114
11    110106746    rs6589121    C    T    630.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RDX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343115    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:664,48,0
11    110118364    rs17110988    A    C    631.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.846;DB;DP=58;Dels=0.0;FS=13.859;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.607;QD=10.89;ReadPosRankSum=-1.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RDX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343115    GT:AD:DP:GQ:PL    0/1:29,29:58:99:661,0,1028
11    110126197    rs2306085    A    G    112.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=14.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RDX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532118    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,144
11    110128994    rs10789756    C    G    387.96    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.06;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.251;QD=22.82;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RDX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343115    GT:AD:DP:GQ:PL    0/1:6,11:17:99:418,0,198
11    110150486    rs151190885    TA    T    148.34    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=2.584;DB;DP=34;FS=0.0;HRun=12;HaplotypeScore=112.7453;IndelType=D;MQ=59.32;MQ0=0;MQRankSum=-0.571;QD=4.36;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RDX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343115    GT:AD:DP:GQ:PL    0/1:23,11:34:99:187,0,322
11    110306727    rs4754453    G    T    350.46    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.224;QD=9.47;ReadPosRankSum=-1.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260270    GT:AD:DP:GQ:PL    0/1:20,17:37:99:380,0,540
11    110306748    rs35520653    G    GT    145.77    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=3.047;DB;DP=27;FS=0.0;HRun=11;HaplotypeScore=121.5071;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=0.501;QD=5.4;ReadPosRankSum=-1.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260270    GT:AD:DP:GQ:PL    0/1:19,8:27:99:185,0,202
11    110452830    rs10749964    C    T    171.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260283    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
11    110452999    rs2008772    C    A    1510.75    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.99;DB;DP=106;Dels=0.0;FS=0.862;HRun=2;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=-0.041;QD=14.25;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260283    GT:AD:DP:GQ:PL    0/1:50,56:106:99:1541,0,1562
11    110453009    rs4079590    G    A    1684.66    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=108;Dels=0.0;FS=2.882;HRun=0;HaplotypeScore=0.8667;MQ=59.79;MQ0=0;MQRankSum=-1.239;QD=15.6;ReadPosRankSum=-0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260283    GT:AD:DP:GQ:PL    0/1:52,56:108:99:1715,0,1590
11    110453250    rs4142632    C    G    177.79    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;MQRankSum=0.405;QD=11.85;ReadPosRankSum=0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260283    GT:AD:DP:GQ:PL    0/1:8,7:15:99:208,0,275
11    110477212    rs326938    C    A    1515.11    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.742;DB;DP=97;Dels=0.0;FS=1.171;HRun=0;HaplotypeScore=2.7178;MQ=59.28;MQ0=0;MQRankSum=-0.244;QD=15.62;ReadPosRankSum=0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260283    GT:AD:DP:GQ:PL    0/1:42,55:97:99:1545,0,1252
11    110486120    rs326944    G    C    44.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260283    GT:AD:DP:GQ:PL    0/1:1,2:3:12.66:74,0,13
11    110697305    rs120434    C    G    332.29    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.328;DB;DP=39;Dels=0.0;FS=4.901;HRun=0;HaplotypeScore=1.933;MQ=60.0;MQ0=0;MQRankSum=-2.184;QD=8.52;ReadPosRankSum=1.042;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,16:39:99:362,0,717
11    110697444    rs120436    G    A    225.63    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=25.07;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,8:9:17.68:256,0,18
11    111154657    rs4938398    C    T    257.08    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.027;DB;DP=24;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.656;QD=10.71;ReadPosRankSum=-1.252;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280325    GT:AD:DP:GQ:PL    0/1:15,9:24:99:287,0,541
11    111156836    rs3087967    T    C    638.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.01;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280325    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:671,54,0
11    111179054    rs3087587    A    G    350.58    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.778;DB;DP=32;Dels=0.0;FS=1.515;HRun=1;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=10.96;ReadPosRankSum=0.02;SNPEFF_AMINO_ACID_CHANGE=A119;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_111178794_111179353;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398035    GT:AD:DP:GQ:PL    0/1:19,12:32:99:381,0,600
11    111228050    rs1815950    C    T    143.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=12;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=11.97;ReadPosRankSum=0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2AF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525662    GT:AD:DP:GQ:PL    0/1:6,6:12:99:174,0,181
11    111249739    rs11213862    C    G    218.29    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.055;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.31;MQ0=1;MQRankSum=1.423;QD=12.13;ReadPosRankSum=1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2AF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393067    GT:AD:DP:GQ:PL    0/1:5,13:18:99:248,0,126
11    111249785    rs11213863    C    G    629.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.638;DB;DP=50;Dels=0.0;FS=12.245;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=0.548;QD=12.59;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2AF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393067    GT:AD:DP:GQ:PL    0/1:20,30:50:99:659,0,638
11    111249819    rs10789825    A    G    1053.96    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=77;Dels=0.0;FS=12.678;HRun=1;HaplotypeScore=2.7487;MQ=59.16;MQ0=0;MQRankSum=-1.273;QD=13.69;ReadPosRankSum=-1.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2AF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393067    GT:AD:DP:GQ:PL    0/1:34,42:77:99:1084,0,934
11    111338478    rs651882    T    C    543.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.774;QD=14.31;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356018    GT:AD:DP:GQ:PL    0/1:19,19:38:99:574,0,683
11    111368047    rs489078    G    T    2278.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_AMINO_ACID_CHANGE=A133;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_111367936_111368134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356018    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2311,166,0
11    111369132    rs527847    G    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356018    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
11    111384006    rs2156719    G    A    291.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356018    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
11    111420364    rs634679    A    G    1867.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.19;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=P135;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_111420343_111420500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAYN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375614    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1900,156,0
11    111425105    rs682239    C    T    31.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.22;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528102    GT:AD:DP:GQ:PL    0/1:3,2:5:61.09:61,0,107
11    111575634    rs36106790    C    CT    410.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.651;DB;DP=18;FS=0.0;HRun=9;HaplotypeScore=63.545;IndelType=I;MQ=58.27;MQ0=0;MQRankSum=0.217;QD=22.82;ReadPosRankSum=-1.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304987    GT:AD:DP:GQ:PL    1/1:2,15:18:21.90:453,22,0
11    111618925    rs78249481    CA    C    95.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=9;HaplotypeScore=17.5271;IndelType=D;MQ=60.0;MQ0=0;QD=19.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311129    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:137,15,0
11    111623088    rs4936675    T    A    2032.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311129    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2066,154,0
11    111624412    rs4322429    A    G    198.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311129    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
11    111625085    rs4936678    C    T    39.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.94;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311129    GT:AD:DP:GQ:PL    0/1:3,2:5:69.72:70,0,110
11    111635655    rs7106104    T    C    561.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311129    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:595,45,0
11    111715570    rs1346180    G    C    563.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524386    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:596,45,0
11    111746397    .    G    C    3333.72    PASS    AB=0.498;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.858;DP=243;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3908;MQ=59.81;MQ0=0;MQRankSum=-1.269;QD=13.72;ReadPosRankSum=-0.893;SNPEFF_AMINO_ACID_CHANGE=P226R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_111745483_111746828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDXACB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542429    GT:AD:DP:GQ:PL    0/1:121,122:243:99:3334,0,3780
11    111747297    rs7124696    A    G    4532.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=F111;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_111747205_111747363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDXACB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528274    GT:AD:DP:GQ:PL    1/1:0,140:140:99:4532,358,0
11    111747427    rs634983    C    T    2638.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=37.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428306    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2671,196,0
11    111749349    rs611010    A    T    2314.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=I87N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_111749280_111749436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428306    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2348,178,0
11    111750430    rs7107213    A    G    934.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260276    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:968,75,0
11    111754368    rs11600652    A    T    358.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260276    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:391,30,0
11    111754574    rs1045282    A    C    2639.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=Q119P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_111754495_111754798;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530214    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2673,202,0
11    111759852    rs11388390    C    CTT    904.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=31;FS=0.0;HRun=13;HaplotypeScore=235.5761;IndelType=I;MQ=57.47;MQ0=0;MQRankSum=1.621;QD=29.17;ReadPosRankSum=1.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260276    GT:AD:DP:GQ:PL    1/1:2,21:31:65.59:946,66,0
11    111760184    rs34987928    C    CT    352.74    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=64;FS=0.0;HRun=16;HaplotypeScore=455.7671;IndelType=I;MQ=49.79;MQ0=0;MQRankSum=-1.717;QD=5.51;ReadPosRankSum=0.292;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260276    GT:AD:DP:GQ:PL    0/1:48,11:64:30.16:392,0,30
11    111781047    rs11603779    A    C    1391.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_AMINO_ACID_CHANGE=C110G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_111780486_111781173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYAB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533971    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1425,102,0
11    111783973    rs12420432    A    T    569.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527950    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:603,45,0
11    111851252    rs501932    G    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529225    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    111853106    rs139455912    G    GC    3758.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;FS=0.0;HRun=2;HaplotypeScore=244.6233;IndelType=I;MQ=60.48;MQ0=0;QD=41.76;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_111853107_111853211;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIXDC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000315253    GT:AD:DP:GQ:PL    1/1:0,89:90:99:3759,262,0
11    111889654    rs476581    C    T    842.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315253    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:876,66,0
11    111914449    rs675283    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280346    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    111915765    rs112605629    C    CA    977.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.12;DB;DP=52;FS=0.0;HRun=12;HaplotypeScore=273.0813;IndelType=I;MQ=57.59;MQ0=0;MQRankSum=0.024;QD=18.79;ReadPosRankSum=-1.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280346    GT:AD:DP:GQ:PL    1/1:11,37:52:62.03:1019,62,0
11    111916001    rs79483143    AG    A    1744.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=2;HaplotypeScore=120.8412;IndelType=D;MQ=59.97;MQ0=0;QD=37.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280346    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1786,138,0
11    111965721    .    T    C    55.51    MQFilter40;QDFilter2    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=1.149;DP=50;Dels=0.0;FS=1.896;HRun=0;HaplotypeScore=0.0;MQ=34.02;MQ0=1;MQRankSum=-2.079;QD=1.11;ReadPosRankSum=2.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528021    GT:AD:DP:GQ:PL    0/1:41,9:50:85.50:86,0,1039
11    111965729    .    T    A    64.51    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.59;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.83;MQ0=1;MQRankSum=-2.066;QD=1.43;ReadPosRankSum=2.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528021    GT:AD:DP:GQ:PL    0/1:36,9:45:94.50:95,0,927
11    112040041    rs148810701    C    G    1359.52    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.128;DB;DP=96;Dels=0.0;FS=2.761;HRun=0;HaplotypeScore=0.9332;MQ=59.81;MQ0=0;MQRankSum=-0.651;QD=14.16;ReadPosRankSum=0.802;SNPEFF_AMINO_ACID_CHANGE=P17R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_112039976_112040054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280358    GT:AD:DP:GQ:PL    0/1:46,50:96:99:1390,0,1430
11    112040136    rs11214106    T    C    607.51    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.39;MQ0=0;MQRankSum=0.939;QD=15.99;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280358    GT:AD:DP:GQ:PL    0/1:17,21:38:99:638,0,534
11    112053565    .    T    TAAAAA    1874.38    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.427;DP=43;FS=3.735;HRun=1;HaplotypeScore=176.923;IndelType=I;MQ=53.93;MQ0=0;MQRankSum=-2.088;QD=43.59;ReadPosRankSum=1.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461480    GT:AD:DP:GQ:PL    0/1:27,15:43:99:1913,0,1236
11    112053722    rs7116736    G    A    3985.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.2;MQ0=0;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461480    GT:AD:DP:GQ:PL    1/1:1,116:117:99:3986,301,0
11    112053797    rs7102218    T    G    1668.60    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=1.69;DB;DP=114;Dels=0.0;FS=4.579;HRun=0;HaplotypeScore=1.8606;MQ=59.75;MQ0=0;MQRankSum=0.607;QD=14.64;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461480    GT:AD:DP:GQ:PL    0/1:59,55:114:99:1699,0,1894
11    112064431    rs7105056    T    C    224.34    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.02;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531003    GT:AD:DP:GQ:PL    0/1:5,9:14:99:254,0,159
11    112065434    rs10891338    T    C    334.50    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.986;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.12;QD=7.27;ReadPosRankSum=0.012;SNPEFF_AMINO_ACID_CHANGE=L126P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_112065376_112065478;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532593    GT:AD:DP:GQ:PL    0/1:31,15:46:99:364,0,841
11    112071174    rs1864349    C    T    78.47    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.62;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357685    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:108,0,30
11    112071570    rs58623769    A    T    291.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527939    GT:AD:DP:GQ:PL    1/1:0,22:22:30.08:325,30,0
11    112073016    rs11214131    T    C    54.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=7.8;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527198    GT:AD:DP:GQ:PL    0/1:3,4:7:84.62:85,0,108
11    112087101    rs2676377    T    A    442.62    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.548;QD=13.83;ReadPosRankSum=-1.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494860    GT:AD:DP:GQ:PL    0/1:17,15:32:99:473,0,535
11    112088499    rs2217401    A    C    1465.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=I443L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_112088484_112088713;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532593    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1498,108,0
11    112123095    rs2564872    A    G    840.76    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=56;Dels=0.0;FS=3.78;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.692;QD=15.01;ReadPosRankSum=-1.764;SNPEFF_AMINO_ACID_CHANGE=S142P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_112123071_112123132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338832    GT:AD:DP:GQ:PL    0/1:25,31:56:99:871,0,841
11    112130987    rs2518361    G    C    95.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338832    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:128,9,0
11    112131274    rs146674321    C    G    404.56    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.472;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=17.59;ReadPosRankSum=1.543;SNPEFF_AMINO_ACID_CHANGE=G13;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_112131129_112131583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338832    GT:AD:DP:GQ:PL    0/1:9,14:23:99:435,0,276
11    112832276    .    A    AG    63.07    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=0.789;DP=29;FS=13.244;HRun=10;HaplotypeScore=230.8579;IndelType=I;MQ=43.14;MQ0=0;MQRankSum=-0.986;QD=2.17;ReadPosRankSum=-0.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397957    GT:AD:DP:GQ:PL    0/1:22,7:29:99:102,0,266
11    112832307    rs11381910    G    GA    1442.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=2;HaplotypeScore=384.2484;IndelType=I;MQ=34.54;MQ0=0;QD=38.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397957    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1485,99,0
11    112832339    rs11284059    GC    G    1429.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=2;HaplotypeScore=498.4805;IndelType=D;MQ=37.56;MQ0=0;QD=34.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397957    GT:AD:DP:GQ:PL    1/1:2,38:41:99:1471,114,0
11    112832353    rs7105734    T    C    811.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=38.13;MQ0=0;QD=20.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397957    GT:AD:DP:GQ:PL    1/1:0,39:39:75.20:844,75,0
11    112832358    rs6589347    T    C    732.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=39.28;MQ0=0;QD=19.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397957    GT:AD:DP:GQ:PL    1/1:2,36:38:69.16:766,69,0
11    113073066    rs5794855    T    TTTTTGTTTTG    2832.86    PASS    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.202;DB;DP=79;FS=1.891;HRun=0;HaplotypeScore=558.289;IndelType=I;MQ=54.51;MQ0=0;MQRankSum=-2.723;QD=35.86;ReadPosRankSum=-2.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401611    GT:AD:DP:GQ:PL    0/1:59,19:79:99:2872,0,2410
11    113073360    rs1836796    T    G    33.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.322;QD=3.69;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316851    GT:AD:DP:GQ:PL    0/1:5,4:9:63.17:63,0,183
11    113076982    rs1975259    G    C    778.36    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.317;DB;DP=64;Dels=0.0;FS=9.447;HRun=0;HaplotypeScore=0.6651;MQ=57.95;MQ0=0;MQRankSum=1.973;QD=12.16;ReadPosRankSum=0.612;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525973    GT:AD:DP:GQ:PL    0/1:33,31:64:99:808,0,1119
11    113085244    rs686050    C    G    666.14    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.04;DB;DP=73;Dels=0.0;FS=0.987;HRun=0;HaplotypeScore=1.7046;MQ=59.05;MQ0=0;MQRankSum=1.842;QD=9.13;ReadPosRankSum=-1.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316851    GT:AD:DP:GQ:PL    0/1:44,29:73:99:696,0,1250
11    113103996    rs584427    T    G    541.55    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.603;DB;DP=46;Dels=0.0;FS=2.626;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.557;QD=11.77;ReadPosRankSum=0.671;SNPEFF_AMINO_ACID_CHANGE=V422;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113103869_113104039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531044    GT:AD:DP:GQ:PL    0/1:24,22:46:99:572,0,819
11    113111665    rs2303378    G    A    2597.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.67;MQ0=0;MQRankSum=-1.632;QD=37.65;ReadPosRankSum=-0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316851    GT:AD:DP:GQ:PL    1/1:1,68:69:99:2631,193,0
11    113113515    rs635596    G    A    3953.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9117;MQ=59.24;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316851    GT:AD:DP:GQ:PL    1/1:0,114:115:99:3954,289,0
11    113194168    rs723077    A    C    501.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.229;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.028;QD=9.29;ReadPosRankSum=1.202;SNPEFF_AMINO_ACID_CHANGE=M48L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113194010_113194173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531164    GT:AD:DP:GQ:PL    0/1:36,18:54:99:532,0,1079
11    113200558    rs7928978    A    G    466.63    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.026;QD=17.28;ReadPosRankSum=2.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527781    GT:AD:DP:GQ:PL    0/1:12,15:27:99:497,0,397
11    113200709    rs2303380    G    A    1734.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455306    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1767,132,0
11    113209428    rs10891536    C    G    402.30    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=29;Dels=0.0;FS=3.485;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.724;QD=13.41;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314756    GT:AD:DP:GQ:PL    0/1:16,13:29:99:432,0,583
11    113211329    rs2288159    G    T    164.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=11.74;ReadPosRankSum=-0.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442859    GT:AD:DP:GQ:PL    0/1:8,6:14:99:194,0,230
11    113211370    rs10891537    T    G    276.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.589;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.391;QD=13.18;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442859    GT:AD:DP:GQ:PL    0/1:9,12:21:99:307,0,285
11    113212553    rs6589372    T    C    681.70    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=65;Dels=0.0;FS=3.676;HRun=0;HaplotypeScore=1.7552;MQ=58.73;MQ0=0;MQRankSum=1.237;QD=10.33;ReadPosRankSum=-1.169;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442859    GT:AD:DP:GQ:PL    0/1:37,28:65:99:712,0,1215
11    113230600    rs2276070    C    T    55.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.2;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314756    GT:AD:DP:GQ:PL    0/1:3,3:6:85.20:85,0,94
11    113233059    rs2298490    G    A    895.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478125    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:928,69,0
11    113234466    rs713233    G    A    90.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478125    GT:AD:DP:GQ:PL    0/1:5,4:9:99:120,0,133
11    113234471    rs719803    A    G    109.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=7.79;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478125    GT:AD:DP:GQ:PL    0/1:8,6:14:99:139,0,214
11    113234679    rs719802    T    C    342.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478125    GT:AD:DP:GQ:PL    1/1:0,12:12:33.06:375,33,0
11    113235419    rs2298489    A    G    89.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478125    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    113235864    rs7949242    A    G    233.70    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.747;QD=29.21;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314756    GT:AD:DP:GQ:PL    0/1:1,7:8:17.15:264,0,17
11    113239082    rs10891540    G    A    925.25    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=63;Dels=0.0;FS=6.778;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=-1.12;QD=14.69;ReadPosRankSum=0.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314756    GT:AD:DP:GQ:PL    0/1:31,32:63:99:955,0,932
11    113253915    rs10891542    G    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.12;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393020    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,109
11    113264272    rs17115439    T    C    2244.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=S85;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113264203_113264497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2277,169,0
11    113264470    rs4938013    A    C    1925.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=I151;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113264203_113264497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1958,144,0
11    113264511    rs11214596    C    G    331.20    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.819;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.28;QD=6.9;ReadPosRankSum=-0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    0/1:31,17:48:99:361,0,1046
11    113264521    rs4938014    G    A    849.83    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.72;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.159;QD=19.31;ReadPosRankSum=0.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    0/1:16,28:44:99:880,0,400
11    113264644    rs4938015    T    C    169.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
11    113265999    rs11214597    G    A    428.21    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.198;DB;DP=23;Dels=0.0;FS=10.414;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.987;QD=18.62;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    0/1:8,15:23:99:458,0,205
11    113266411    rs35023999    A    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    113266702    rs11214598    T    C    468.41    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=26;Dels=0.0;FS=2.038;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.764;QD=18.02;ReadPosRankSum=0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    0/1:10,16:26:99:498,0,272
11    113268059    rs11604671    G    A    409.27    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.096;QD=21.54;ReadPosRankSum=1.973;SNPEFF_AMINO_ACID_CHANGE=G318R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113267946_113268064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    0/1:6,13:19:99:439,0,187
11    113270015    rs4938016    G    C    373.69    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.399;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8237;MQ=59.19;MQ0=0;MQRankSum=0.717;QD=16.25;ReadPosRankSum=1.74;SNPEFF_AMINO_ACID_CHANGE=G442R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113269686_113271140;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    0/1:8,15:23:99:404,0,207
11    113270160    rs2734849    A    G    585.75    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=35;Dels=0.0;FS=5.501;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.324;QD=16.74;ReadPosRankSum=1.11;SNPEFF_AMINO_ACID_CHANGE=H490R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113269686_113271140;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    0/1:13,22:35:99:616,0,397
11    113270374    rs2734848    C    T    555.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_AMINO_ACID_CHANGE=Y561;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113269686_113271140;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    1/1:0,18:19:45.13:589,45,0
11    113270828    rs1800497    G    A    589.22    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.808;DB;DP=26;Dels=0.0;FS=2.021;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=22.66;ReadPosRankSum=1.94;SNPEFF_AMINO_ACID_CHANGE=E713K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113269686_113271140;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303941    GT:AD:DP:GQ:PL    0/1:9,17:26:99:619,0,272
11    113281397    rs6276    C    T    666.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=26.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535984    GT:AD:DP:GQ:PL    1/1:0,25:25:54.16:699,54,0
11    113283459    rs6277    G    A    219.44    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.84;MQ0=0;MQRankSum=0.529;QD=10.97;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=P290;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113283278_113283605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346454    GT:AD:DP:GQ:PL    0/1:9,11:20:99:249,0,250
11    113283477    rs6275    A    G    605.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=H284;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113283278_113283605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346454    GT:AD:DP:GQ:PL    1/1:0,21:21:48.15:639,48,0
11    113285299    rs2511521    G    A    555.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539420    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:588,48,0
11    113294998    rs12808482    T    A    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.86;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542616    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,106
11    113561054    rs7110736    A    G    377.89    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.408;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.571;QD=15.12;ReadPosRankSum=0.843;SNPEFF_AMINO_ACID_CHANGE=F110L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113560953_113561095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536856    GT:AD:DP:GQ:PL    0/1:12,13:25:99:408,0,316
11    113561057    rs7110738    A    G    314.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.128;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.308;QD=12.08;ReadPosRankSum=0.615;SNPEFF_AMINO_ACID_CHANGE=L109;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113560953_113561095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536856    GT:AD:DP:GQ:PL    0/1:13,13:26:99:344,0,329
11    113564080    rs45553435    G    A    40.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299882    GT:AD:DP:GQ:PL    0/1:2,2:4:60.79:70,0,61
11    113566207    rs4936279    C    A    640.59    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.288;DB;DP=48;Dels=0.0;FS=1.413;HRun=0;HaplotypeScore=0.9996;MQ=59.13;MQ0=0;MQRankSum=0.138;QD=13.35;ReadPosRankSum=-0.138;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538091    GT:AD:DP:GQ:PL    0/1:23,25:48:99:671,0,726
11    113570405    rs4936280    T    C    139.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.827;QD=9.3;ReadPosRankSum=-1.12;SNPEFF_AMINO_ACID_CHANGE=A30;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113570317_113570415;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545579    GT:AD:DP:GQ:PL    0/1:9,6:15:99:170,0,271
11    113576932    rs7926267    A    G    1337.23    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=1.192;DB;DP=81;Dels=0.0;FS=7.68;HRun=1;HaplotypeScore=1.5317;MQ=59.43;MQ0=0;MQRankSum=0.156;QD=16.51;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299882    GT:AD:DP:GQ:PL    0/1:34,47:81:99:1367,0,1003
11    113608164    rs3835162    G    GA    277.81    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.995;DB;DP=32;FS=0.0;HRun=13;HaplotypeScore=111.3303;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=-0.539;QD=8.68;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZW10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200135    GT:AD:DP:GQ:PL    0/1:16,13:32:99:317,0,177
11    113609854    rs4351850    T    A    125.08    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.699;QD=7.36;ReadPosRankSum=2.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZW10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200135    GT:AD:DP:GQ:PL    0/1:11,6:17:99:155,0,404
11    113618470    rs2459977    T    A    1063.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.305;DB;DP=91;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5803;MQ=59.49;MQ0=0;MQRankSum=-0.036;QD=11.68;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZW10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200135    GT:AD:DP:GQ:PL    0/1:52,39:91:99:1093,0,1881
11    113618968    rs2513584    G    C    1791.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZW10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200135    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1825,138,0
11    113629035    rs4612842    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZW10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200135    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    113631431    rs34903936    GA    G    263.61    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.183;DB;DP=19;FS=9.425;HRun=9;HaplotypeScore=114.3137;IndelType=D;MQ=53.61;MQ0=0;MQRankSum=-0.197;QD=13.87;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZW10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200135    GT:AD:DP:GQ:PL    0/1:6,13:19:99:303,0,110
11    113670052    rs2459971    T    A    2160.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=T1016;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113668598_113670137;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260188    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2193,168,0
11    113675960    rs1034582    T    C    31.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003302    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
11    113678924    rs2513582    G    T    2879.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.41;MQ0=0;QD=36.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538475    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2912,217,0
11    113679119    rs2465647    C    T    3747.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=35.35;SNPEFF_AMINO_ACID_CHANGE=S443;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113679020_113679159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544967    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3747,277,0
11    113680018    rs2513581    G    C    4678.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=59.64;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537706    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4679,352,0
11    113723061    rs2428008    C    A    340.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540925    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:374,27,0
11    113802601    rs1176746    A    G    637.34    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.127;QD=11.8;ReadPosRankSum=-1.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260191    GT:AD:DP:GQ:PL    0/1:29,25:54:99:667,0,913
11    113803028    rs1176744    A    C    385.23    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.868;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=59.55;MQ0=0;MQRankSum=-0.069;QD=7.55;ReadPosRankSum=0.719;SNPEFF_AMINO_ACID_CHANGE=Y118S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_113803011_113803180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537778    GT:AD:DP:GQ:PL    0/1:33,18:51:99:415,0,913
11    113803887    rs2276307    A    G    212.13    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.473;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.523;QD=12.48;ReadPosRankSum=-1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260191    GT:AD:DP:GQ:PL    0/1:9,8:17:99:242,0,250
11    113846006    rs1062613    T    C    315.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299961    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:348,27,0
11    113850140    rs2276302    G    A    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299961    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    113856681    rs10160548    G    T    4600.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DB;DP=150;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.6416;MQ=59.69;MQ0=0;MQRankSum=1.709;QD=30.67;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299961    GT:AD:DP:GQ:PL    1/1:2,147:150:99:4601,358,0
11    114169038    rs1941404    A    G    214.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299964    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
11    114270604    rs3741302    C    A    741.93    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.671;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.67;QD=19.02;ReadPosRankSum=0.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325636    GT:AD:DP:GQ:PL    0/1:16,23:39:99:772,0,517
11    114276552    rs58728682    C    CA    85.01    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=15;FS=2.963;HRun=9;HaplotypeScore=58.0293;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=0.933;QD=5.67;ReadPosRankSum=1.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538134    GT:AD:DP:GQ:PL    0/1:10,5:15:99:124,0,182
11    114315188    rs540712    A    G    637    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542186    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:670,51,0
11    114316989    rs654531    C    A    129.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542186    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
11    114393314    rs492840    T    C    190.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536312    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:223,18,0
11    114393652    rs10891692    C    T    1610.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=35.01;SNPEFF_AMINO_ACID_CHANGE=G211R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_114393601_114393813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251921    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1643,123,0
11    114398627    rs34542949    C    CA    1172    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=10;HaplotypeScore=80.8833;IndelType=I;MQ=60.79;MQ0=0;QD=28.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534921    GT:AD:DP:GQ:PL    1/1:3,38:41:99:1214,114,0
11    114401577    rs524911    T    C    1592.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=A51;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_114400897_114401630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424269    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1625,132,0
11    114441943    rs10891705    G    A    2376.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=A167V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_114441313_114442195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424261    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2410,181,0
11    114442103    rs550897    A    G    5200.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.57;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=Y114H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_114441313_114442195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424261    GT:AD:DP:GQ:PL    1/1:0,149:150:99:5201,382,0
11    114442265    rs481080    G    A    1578.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375478    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1611,117,0
11    114450708    rs487707    G    A    218.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375478    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:251,21,0
11    114451129    rs640796    T    C    184.24    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.588;QD=11.52;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375478    GT:AD:DP:GQ:PL    0/1:9,7:16:99:214,0,329
11    114465526    rs78608548    A    T    636.08    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.926;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=15.51;ReadPosRankSum=-0.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375478    GT:AD:DP:GQ:PL    0/1:21,20:41:99:666,0,739
11    114550320    rs17550338    C    T    379.73    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5572;MQ=59.33;MQ0=0;MQRankSum=-1.06;QD=13.56;ReadPosRankSum=-1.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375475    GT:AD:DP:GQ:PL    0/1:15,13:28:99:410,0,488
11    114550334    rs1612325    A    G    1358.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375475    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1391,105,0
11    114569054    rs1712838    A    G    1468.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=G140;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_114568767_114569500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375475    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1502,117,0
11    114576378    rs1712840    A    G    712.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375475    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:745,60,0
11    114576626    rs1356428    A    T    1180.55    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=98;Dels=0.0;FS=1.754;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.558;QD=12.05;ReadPosRankSum=-1.475;SNPEFF_AMINO_ACID_CHANGE=N351I;SNPEFF_CODON_CHANGE=aAt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_114576503_114576718;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM55B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389586    GT:AD:DP:GQ:PL    0/1:48,50:98:99:1211,0,1539
11    115049180    rs17304149    C    T    323.38    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.42;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=47.7;MQ0=0;MQRankSum=-0.082;QD=12.94;ReadPosRankSum=-1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CADM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331581    GT:AD:DP:GQ:PL    0/1:13,12:25:99:353,0,417
11    115049203    .    G    GT    64.65    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=2.423;DP=51;FS=0.0;HRun=17;HaplotypeScore=629.1143;IndelType=I;MQ=47.98;MQ0=0;MQRankSum=-1.194;QD=1.27;ReadPosRankSum=0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CADM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331581    GT:AD:DP:GQ:PL    0/1:35,8:51:98.53:104,0,99
11    115049311    rs11215399    A    G    2020.40    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.711;DB;DP=154;Dels=0.0;FS=2.928;HRun=0;HaplotypeScore=0.734;MQ=57.59;MQ0=0;MQRankSum=2.953;QD=13.12;ReadPosRankSum=-1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CADM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331581    GT:AD:DP:GQ:PL    0/1:72,82:154:99:2050,0,2031
11    115061533    rs4936322    T    C    177.77    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.932;QD=14.81;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CADM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331581    GT:AD:DP:GQ:PL    0/1:5,7:12:99:208,0,175
11    115080042    rs7125361    C    G    212.74    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=19.34;ReadPosRankSum=-1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CADM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331581    GT:AD:DP:GQ:PL    0/1:4,7:11:99:243,0,138
11    115100186    rs2275997    A    G    33.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=8.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CADM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540951    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:64,0,33
11    115102224    rs11607928    A    G    518.21    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.957;DB;DP=37;Dels=0.0;FS=3.227;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.228;QD=14.01;ReadPosRankSum=-1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CADM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331581    GT:AD:DP:GQ:PL    0/1:18,19:37:99:548,0,606
11    115111305    rs2269737    A    C    41.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.67;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CADM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331581    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:71,0,32
11    116629734    rs72288529    T    TA    466.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=13;HaplotypeScore=192.6214;IndelType=I;MQ=55.97;MQ0=0;QD=14.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BUD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260210    GT:AD:DP:GQ:PL    1/1:10,13:33:65.46:508,65,0
11    116631391    rs3741301    T    C    2380.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BUD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260210    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2413,178,0
11    116631690    rs3741300    G    A    623.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BUD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260210    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:657,48,0
11    116631707    rs3825041    T    C    470.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BUD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260210    GT:AD:DP:GQ:PL    1/1:0,18:18:39.11:504,39,0
11    116640768    rs1269325    G    A    197.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8994;MQ=53.03;MQ0=0;QD=28.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BUD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260210    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:231,18,0
11    116641028    rs1263151    C    T    364.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BUD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260210    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
11    116643436    rs656417    G    C    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=14.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF259;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227322    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:75,6,0
11    116654435    rs603446    C    T    519.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF259;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425791    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:553,42,0
11    116656788    rs10750096    C    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227665    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    116657561    rs3741298    C    T    1598.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227665    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1632,123,0
11    116660686    rs2266788    G    A    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433069    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
11    116661826    rs2072560    T    C    311.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227665    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:344,27,0
11    116662579    rs651821    C    T    547.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=27.38;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_116662528_116662584;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433069    GT:AD:DP:GQ:PL    1/1:0,20:20:42.14:581,42,0
11    116691511    rs35211609    GGACA    G    1173.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.6;DB;DP=29;FS=3.358;HRun=0;HaplotypeScore=154.6767;IndelType=D;MQ=58.3;MQ0=0;MQRankSum=0.0;QD=40.47;ReadPosRankSum=-0.267;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357780    GT:AD:DP:GQ:PL    1/1:3,26:29:2.66:1212,3,0
11    116692334    rs5104    C    T    1112.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_AMINO_ACID_CHANGE=S147N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_116691419_116692597;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357780    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1146,87,0
11    116692694    rs5100    G    A    2370.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357780    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2403,184,0
11    116693464    rs5092    C    T    2965.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=59.46;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=T29;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_116693375_116693501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357780    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2998,220,0
11    116701122    rs2070669    C    G    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227667    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
11    116701153    rs2070668    T    G    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227667    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    116701535    rs4520    T    C    848.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;QD=36.88;SNPEFF_AMINO_ACID_CHANGE=G34;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_116701489_116701612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227667    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:881,66,0
11    116703640    rs5128    G    C    1162.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.535;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=-1.04;QD=31.43;ReadPosRankSum=0.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236850    GT:AD:DP:GQ:PL    1/1:1,35:37:50.30:1196,50,0
11    116703671    rs4225    G    T    852.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236850    GT:AD:DP:GQ:PL    1/1:1,26:27:66.21:886,66,0
11    116707583    rs5072    A    G    369.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227667    GT:AD:DP:GQ:PL    1/1:0,12:12:36.06:402,36,0
11    116707684    rs2070665    A    G    2076.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227667    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2109,159,0
11    116708020    rs5070    A    G    144.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227667    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:177,15,0
11    116716869    rs472111    G    C    53.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292055    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
11    116720089    rs2289893    T    C    211.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292055    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:245,21,0
11    116732512    rs2075292    G    T    251.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292055    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
11    116732856    rs484646    A    G    2008.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=59.34;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292055    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2041,168,0
11    116734146    rs718847    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480222    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
11    116734545    rs11216164    G    A    1345.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480222    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1378,102,0
11    116824884    rs511676    T    G    285.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292055    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:318,24,0
11    117008881    rs474981    A    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=23.52;MQ0=0;QD=13.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-109L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528464    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:100,9,0
11    117008946    rs504068    T    C    737.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.38;MQ0=0;QD=30.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-109L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528464    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:771,63,0
11    117030581    rs1871757    T    A    1085.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304808    GT:AD:DP:GQ:PL    1/1:0,29:29:87.28:1119,87,0
11    117030624    rs35139041    AT    A    1278.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.675;DB;DP=62;FS=0.0;HRun=11;HaplotypeScore=298.1671;IndelType=D;MQ=60.69;MQ0=0;MQRankSum=-1.439;QD=20.62;ReadPosRankSum=-1.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304808    GT:AD:DP:GQ:PL    1/1:5,54:62:99:1320,141,0
11    117032125    rs3736120    G    T    125.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533677    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
11    117034388    rs3057863    CAAAAAA    C    713.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=18;HaplotypeScore=141.6663;IndelType=D;MQ=38.02;MQ0=0;QD=39.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533677    GT:AD:DP:GQ:PL    1/1:2,14:18:48.05:756,48,0
11    117034619    rs7122944    G    T    3352.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.1;MQ0=0;QD=34.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533677    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3353,253,0
11    117034729    rs10790175    T    C    967.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533677    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:1001,81,0
11    117049930    .    G    A    95.23    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.387;QD=7.94;ReadPosRankSum=1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419197    GT:AD:DP:GQ:PL    0/1:6,5:12:99:125,0,205
11    117052069    rs35248926    GTCTCT    G    761.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=78.5558;IndelType=D;MQ=50.58;MQ0=0;QD=63.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419197    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:803,36,0
11    117053165    rs7946257    A    G    771.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIDT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525347    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:805,60,0
11    117059347    rs90192    C    T    649.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIDT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524842    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:683,51,0
11    117059552    rs474339    G    A    2571.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIDT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524842    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2605,193,0
11    117062370    rs1242229    T    C    266.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIDT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524988    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:299,24,0
11    117062429    .    T    G    32.92    QDFilter2    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.554;MQ=48.56;MQ0=0;MQRankSum=-1.932;QD=1.65;ReadPosRankSum=1.932;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIDT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524988    GT:AD:DP:GQ:PL    0/1:4,16:20:62.91:63,0,88
11    117064693    rs521171    C    G    639.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIDT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524988    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:672,51,0
11    117160347    rs539765    A    G    1615.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.22;MQ0=0;QD=29.92;SNPEFF_AMINO_ACID_CHANGE=C356R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117160203_117160523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000510630    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1648,129,0
11    117241760    rs2305826    T    A    3702.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278935    GT:AD:DP:GQ:PL    1/1:0,110:111:99:3703,277,0
11    117244255    rs12794050    C    A    37.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=9.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278935    GT:AD:DP:GQ:PL    0/1:2,2:4:33.62:67,0,34
11    117251521    rs2061293    G    C    32.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278935    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
11    117258198    rs501776    T    C    392.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278935    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:425,33,0
11    117266312    rs2305830    C    G    926.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=T962S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117266263_117266438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000529538    GT:AD:DP:GQ:PL    1/1:0,29:29:75.22:960,75,0
11    117266648    rs484988    G    C    372.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375253    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:405,30,0
11    117266754    rs693147    A    C    1583.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.48;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375253    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1616,123,0
11    117267884    rs573455    A    G    1030.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=29.45;SNPEFF_AMINO_ACID_CHANGE=Q1119R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117267807_117268029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278935    GT:AD:DP:GQ:PL    1/1:0,35:35:87.23:1064,87,0
11    117282800    rs522885    G    T    1701.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=33.37;SNPEFF_AMINO_ACID_CHANGE=S1433;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117282788_117283984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278935    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1735,126,0
11    117283091    rs2279013    C    T    89.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528706    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
11    117299015    rs2925768    T    C    536.44    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.108;DB;DP=42;Dels=0.0;FS=3.296;HRun=2;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=-1.289;QD=12.77;ReadPosRankSum=0.051;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    0/1:23,19:42:99:566,0,642
11    117303858    rs11216382    T    C    167.57    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.23;ReadPosRankSum=0.678;SNPEFF_AMINO_ACID_CHANGE=Q1441;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117303854_117303972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446508    GT:AD:DP:GQ:PL    0/1:4,7:11:99:198,0,100
11    117306291    rs661789    G    T    795.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    1/1:1,25:26:63.20:828,63,0
11    117307933    rs143121003    C    T    1004.27    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.92;DB;DP=78;Dels=0.0;FS=4.563;HRun=1;HaplotypeScore=2.7499;MQ=59.7;MQ0=0;MQRankSum=-1.182;QD=12.88;ReadPosRankSum=-0.249;SNPEFF_AMINO_ACID_CHANGE=R1309Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117307838_117308125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446508    GT:AD:DP:GQ:PL    0/1:41,37:78:99:1034,0,1044
11    117309581    rs61905269    G    A    62.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=7.87;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    0/1:5,3:8:92.93:93,0,137
11    117314320    rs2242134    C    T    30.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
11    117332343    rs2298766    C    T    99.79    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=14;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.212;QD=7.13;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    0/1:9,5:14:99:130,0,208
11    117332352    rs588048    A    G    257.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:290,21,0
11    117335722    rs538847    T    C    762.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.909;DB;DP=56;Dels=0.0;FS=5.572;HRun=1;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=-0.877;QD=13.61;ReadPosRankSum=-0.057;SNPEFF_AMINO_ACID_CHANGE=Q1127;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117335658_117335898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    0/1:28,28:56:99:792,0,867
11    117342462    rs540659    T    C    171.88    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.464;QD=10.74;ReadPosRankSum=0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    0/1:10,6:16:99:202,0,358
11    117651017    .    AAG    A    164.11    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=16.7439;IndelType=D;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321322    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
11    117667688    rs113876980    C    A    69.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=11.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532119    GT:AD:DP:GQ:PL    0/1:3,3:6:69.19:100,0,69
11    117691145    rs2014536    C    T    39.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317594    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
11    117691148    rs2014537    C    T    35.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317594    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
11    117691386    rs869789    G    A    423.03    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=41;Dels=0.0;FS=2.794;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.759;QD=10.32;ReadPosRankSum=-0.787;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317594    GT:AD:DP:GQ:PL    0/1:25,16:41:99:453,0,751
11    117693255    rs529623    T    C    106.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=15.15;ReadPosRankSum=-1.754;SNPEFF_AMINO_ACID_CHANGE=E68G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117690790_117693432;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547335    GT:AD:DP:GQ:PL    0/1:3,4:7:76.30:136,0,76
11    117711232    rs496164    A    G    73.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.77;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527053    GT:AD:DP:GQ:PL    0/1:2,3:5:68.47:104,0,68
11    117712887    rs473057    G    A    294.11    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.766;QD=18.38;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260282    GT:AD:DP:GQ:PL    0/1:7,9:16:99:324,0,193
11    117772955    rs73020481    T    C    53.62    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.124;QD=2.33;ReadPosRankSum=-1.361;SNPEFF_AMINO_ACID_CHANGE=*533;SNPEFF_CODON_CHANGE=tAa/tGa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_11_117771358_117772980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528626    GT:AD:DP:GQ:PL    0/1:16,7:23:83.62:84,0,436
11    117773110    rs494457    G    C    214.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430170    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
11    117774291    rs2845712    A    C    453.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=L586V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117773760_117774522;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445164    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:487,39,0
11    117774394    rs59590191    A    G    381.48    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.258;DB;DP=31;Dels=0.0;FS=3.315;HRun=3;HaplotypeScore=0.9979;MQ=59.25;MQ0=0;MQRankSum=-0.218;QD=12.31;ReadPosRankSum=1.052;SNPEFF_AMINO_ACID_CHANGE=L516;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117774370_117774522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528626    GT:AD:DP:GQ:PL    0/1:14,17:31:99:411,0,420
11    117774560    rs3809041    G    C    231.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.835;QD=19.3;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526090    GT:AD:DP:GQ:PL    0/1:4,8:12:99:262,0,126
11    117776471    rs3802873    C    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526090    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
11    117781435    rs2155194    A    G    498.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=S276;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117781422_117781465;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528626    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:531,39,0
11    117781618    rs2155195    A    G    86.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336500    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
11    117782638    rs2277288    A    G    604.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336500    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:638,48,0
11    117784434    rs11605749    C    G    794.87    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.776;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2337;MQ=60.0;MQ0=0;MQRankSum=-0.614;QD=15.59;ReadPosRankSum=-0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525794    GT:AD:DP:GQ:PL    0/1:19,32:51:99:825,0,614
11    117785260    rs4936410    T    C    1811.79    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.506;DB;DP=140;DS;Dels=0.0;FS=0.797;HRun=0;HaplotypeScore=2.8086;MQ=59.51;MQ0=0;MQRankSum=-0.167;QD=12.94;ReadPosRankSum=1.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525794    GT:AD:DP:GQ:PL    0/1:73,67:140:99:1842,0,2376
11    117789342    rs75037497    T    C    195.88    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.612;DB;DP=19;Dels=0.0;FS=4.359;HRun=2;HaplotypeScore=0.9983;MQ=54.95;MQ0=0;MQRankSum=-0.367;QD=10.31;ReadPosRankSum=1.674;SNPEFF_AMINO_ACID_CHANGE=Q78R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117789124_117789553;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430170    GT:AD:DP:GQ:PL    0/1:10,9:19:99:226,0,283
11    117789345    rs61900347    G    C    184.68    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.592;DB;DP=19;Dels=0.0;FS=2.062;HRun=1;HaplotypeScore=0.9983;MQ=54.95;MQ0=0;MQRankSum=-0.041;QD=9.72;ReadPosRankSum=0.449;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000336500    GT:AD:DP:GQ:PL    0/1:10,9:19:99:215,0,279
11    117789367    .    A    G    48.09    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DP=16;Dels=0.0;FS=10.532;HRun=1;HaplotypeScore=0.0;MQ=55.52;MQ0=0;MQRankSum=-1.273;QD=3.01;ReadPosRankSum=-2.85;SNPEFF_AMINO_ACID_CHANGE=S70P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117789350_117789553;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336500    GT:AD:DP:GQ:PL    0/1:12,4:16:78.08:78,0,366
11    117799923    rs7928668    T    C    82.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=16.54;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336500    GT:AD:DP:GQ:PL    0/1:1,4:5:28.61:113,0,29
11    117800083    rs10892196    T    C    146.16    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=20.88;ReadPosRankSum=0.198;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525794    GT:AD:DP:GQ:PL    0/1:2,5:7:61.34:176,0,61
11    117858983    rs4252248    G    A    444.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.579;DB;DP=26;Dels=0.0;FS=2.732;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.083;QD=17.11;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227752    GT:AD:DP:GQ:PL    0/1:10,15:26:99:475,0,252
11    117863829    rs2508450    T    C    208.08    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.377;QD=16.01;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531365    GT:AD:DP:GQ:PL    0/1:6,7:13:99:238,0,209
11    117864047    rs2256111    A    G    571.79    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=0.414;DB;DP=55;Dels=0.0;FS=4.135;HRun=0;HaplotypeScore=0.9665;MQ=59.58;MQ0=0;MQRankSum=-1.576;QD=10.4;ReadPosRankSum=0.871;SNPEFF_AMINO_ACID_CHANGE=A133;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117863956_117864125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10RA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536858    GT:AD:DP:GQ:PL    0/1:32,23:55:99:602,0,970
11    117864063    rs3135932    A    G    708.08    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DB;DP=50;Dels=0.0;FS=1.097;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.351;QD=14.16;ReadPosRankSum=0.09;SNPEFF_AMINO_ACID_CHANGE=S10G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117863956_117864125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10RA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545409    GT:AD:DP:GQ:PL    0/1:24,26:50:99:738,0,797
11    117869670    rs2229113    A    G    391.93    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=14.0;ReadPosRankSum=-0.046;SNPEFF_AMINO_ACID_CHANGE=R202G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117869430_117870503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10RA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545409    GT:AD:DP:GQ:PL    0/1:13,15:28:99:422,0,425
11    117965646    rs2276125    G    A    30.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.07;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMPRSS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437212    GT:AD:DP:GQ:PL    0/1:4,2:6:60.38:60,0,145
11    117979744    rs10892216    C    A    109.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.21;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMPRSS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519813    GT:AD:DP:GQ:PL    0/1:2,4:6:48.55:139,0,49
11    117979814    rs10892217    C    T    73.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.21;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMPRSS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519813    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,103
11    117982495    rs1941635    T    G    966.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.85;SNPEFF_AMINO_ACID_CHANGE=V155G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117982456_117982550;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMPRSS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000522151    GT:AD:DP:GQ:PL    1/1:0,35:36:78.24:1000,78,0
11    117988082    rs642215    T    C    2389.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2762;MQ=58.58;MQ0=0;QD=30.25;SNPEFF_AMINO_ACID_CHANGE=S258;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_117988020_117988169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMPRSS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522307    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2423,184,0
11    117988223    rs643014    G    A    1433.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.48;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMPRSS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518610    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1466,117,0
11    117988654    rs7123209    G    C    400.73    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=25;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.356;QD=16.03;ReadPosRankSum=-0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMPRSS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518610    GT:AD:DP:GQ:PL    0/1:11,14:25:99:431,0,337
11    117988784    rs8924    A    G    345.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMPRSS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518610    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:378,27,0
11    118011776    rs668468    G    A    41.66    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;MQRankSum=-0.354;QD=2.98;ReadPosRankSum=-2.192;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SCN4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532138    GT:AD:DP:GQ:PL    0/1:10,4:14:71.65:72,0,354
11    118011860    rs12804550    G    A    275.98    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.832;DB;DP=30;Dels=0.0;FS=3.616;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.562;QD=9.2;ReadPosRankSum=0.112;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SCN4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532138    GT:AD:DP:GQ:PL    0/1:19,11:30:99:306,0,518
11    118014873    rs112525313    C    T    224.23    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.25;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SCN4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324727    GT:AD:DP:GQ:PL    0/1:5,8:13:99:254,0,166
11    118016039    rs955917    G    A    214.18    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.818;QD=21.42;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SCN4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324727    GT:AD:DP:GQ:PL    0/1:3,7:10:95.65:244,0,96
11    118016068    rs1793137    C    T    206.89    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=25.86;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SCN4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324727    GT:AD:DP:GQ:PL    0/1:1,7:8:17.17:237,0,17
11    118037813    rs8192613    G    T    340.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.454;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.03;MQ0=0;MQRankSum=0.318;QD=14.2;ReadPosRankSum=-0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278947    GT:AD:DP:GQ:PL    0/1:12,12:24:99:371,0,416
11    118067426    rs648947    A    G    2527.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.73;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529164    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2561,214,0
11    118067621    rs951657    A    G    569.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529164    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:603,45,0
11    118068521    rs1613643    T    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292067    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    118068949    rs1617182    C    T    239.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537867    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:272,21,0
11    118071097    rs1626649    T    C    507.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537867    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:540,39,0
11    118074117    rs1793173    A    G    5631.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.267;DB;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5787;MQ=59.46;MQ0=0;MQRankSum=1.267;QD=33.13;ReadPosRankSum=0.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524477    GT:AD:DP:GQ:PL    1/1:1,169:170:99:5632,385,0
11    118074337    rs1793174    A    G    2628.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=35.05;SNPEFF_AMINO_ACID_CHANGE=V154A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118074143_118074380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526620    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2661,199,0
11    118081345    rs17121881    A    T    2360.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=I55N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118081202_118081427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524477    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2393,178,0
11    118081468    rs17121882    C    T    981.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292067    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1015,78,0
11    118083664    rs1715429    A    G    1672.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=29.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMICA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356289    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1705,126,0
11    118103972    rs1793162    A    C    210.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPZL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278949    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
11    118107805    rs1793140    A    G    2208.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.29;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=H125;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118107765_118107975;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPZL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527472    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2242,172,0
11    118108003    rs1793141    G    A    1180.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPZL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278949    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1213,99,0
11    118110977    rs2853006    T    C    2020.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=K51;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118110926_118111056;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPZL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527472    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2054,153,0
11    118122737    rs1715458    A    G    261.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278937    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:295,24,0
11    118127983    .    A    G    940.91    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.541;DP=61;Dels=0.0;FS=2.175;HRun=0;HaplotypeScore=1.7465;MQ=59.62;MQ0=0;MQRankSum=-0.407;QD=15.42;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=Y210;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118127953_118128028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPZL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278937    GT:AD:DP:GQ:PL    0/1:29,32:61:99:971,0,837
11    118131049    rs17121997    T    C    342.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525647    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:375,27,0
11    118134785    rs1624780    T    G    1037.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.43;MQ0=0;QD=31.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPZL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278937    GT:AD:DP:GQ:PL    1/1:0,32:33:87.24:1071,87,0
11    118175439    rs2231440    G    A    52.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=8.71;ReadPosRankSum=-1.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526146    GT:AD:DP:GQ:PL    0/1:2,4:6:59.65:82,0,60
11    118175540    rs2231441    A    G    667.32    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.269;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.715;QD=15.17;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361763    GT:AD:DP:GQ:PL    0/1:23,21:44:99:697,0,806
11    118178007    rs4606515    C    T    1111.53    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.684;DB;DP=80;Dels=0.0;FS=1.048;HRun=0;HaplotypeScore=0.9159;MQ=59.19;MQ0=0;MQRankSum=1.241;QD=13.89;ReadPosRankSum=-0.103;SNPEFF_AMINO_ACID_CHANGE=G18;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118178003_118178023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361763    GT:AD:DP:GQ:PL    0/1:42,38:80:99:1142,0,1358
11    118179197    rs1599810    A    G    464.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361763    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:498,36,0
11    118179200    rs1599809    G    A    243.66    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.626;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.485;QD=16.24;ReadPosRankSum=0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361763    GT:AD:DP:GQ:PL    0/1:4,11:15:99:274,0,133
11    118182801    rs1945764    G    A    1342.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.9554;MQ=59.42;MQ0=0;QD=33.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361763    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1375,108,0
11    118182829    rs1945765    T    A    805.42    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.74;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.68;MQ0=0;MQRankSum=1.115;QD=12.02;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361763    GT:AD:DP:GQ:PL    0/1:38,28:67:99:835,0,1219
11    118183733    rs28423005    C    T    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361763    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,94
11    118185140    rs2298821    T    C    407.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.416;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=14.54;ReadPosRankSum=0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528435    GT:AD:DP:GQ:PL    0/1:12,16:28:99:437,0,365
11    118185346    rs3819250    G    A    107.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.4;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528435    GT:AD:DP:GQ:PL    0/1:3,4:7:96.36:138,0,96
11    118209960    rs2276424    A    C    397.29    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=0.799;DB;DP=50;Dels=0.0;FS=1.795;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.64;QD=7.95;ReadPosRankSum=0.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300692    GT:AD:DP:GQ:PL    0/1:31,19:50:99:427,0,1087
11    118210106    rs2276423    G    C    505.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.509;DB;DP=27;Dels=0.0;FS=4.468;HRun=0;HaplotypeScore=0.9665;MQ=58.17;MQ0=1;MQRankSum=-0.108;QD=18.72;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300692    GT:AD:DP:GQ:PL    0/1:9,18:27:99:535,0,280
11    118210424    rs72451178    TAC    T    85.80    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=99.7331;IndelType=D;MQ=53.3;MQ0=0;MQRankSum=-0.71;QD=4.77;ReadPosRankSum=0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300692    GT:AD:DP:GQ:PL    0/1:12,5:18:99:125,0,266
11    118221137    rs3753060    C    T    159.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.248;QD=15.96;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CD3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528540    GT:AD:DP:GQ:PL    0/1:3,6:10:86.44:190,0,86
11    118221474    rs1561966    G    A    528.96    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.235;QD=18.89;ReadPosRankSum=-1.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CD3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528540    GT:AD:DP:GQ:PL    0/1:11,17:28:99:559,0,333
11    118239266    rs2276421    G    A    932.75    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.868;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.65;QD=13.32;ReadPosRankSum=-0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252108    GT:AD:DP:GQ:PL    0/1:39,31:70:99:963,0,1397
11    118240332    rs11216860    T    C    210.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.637;QD=17.51;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252108    GT:AD:DP:GQ:PL    0/1:4,8:12:99:240,0,116
11    118243700    rs34104337    TA    T    52.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=16;HaplotypeScore=112.8672;IndelType=D;MQ=50.39;MQ0=0;QD=4.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252108    GT:AD:DP:GQ:PL    1/1:6,6:13:16.45:95,16,0
11    118309873    rs35067847    CA    C    38.31    QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.771;DB;DP=37;FS=0.0;HRun=15;HaplotypeScore=198.4276;IndelType=D;MQ=57.46;MQ0=0;MQRankSum=0.738;QD=1.04;ReadPosRankSum=1.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328469    GT:AD:DP:GQ:PL    0/1:27,7:37:77.34:77,0,380
11    118359161    rs572126    G    A    753.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.98;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.377;QD=32.75;ReadPosRankSum=-0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420751    GT:AD:DP:GQ:PL    1/1:1,22:23:25.55:786,26,0
11    118362414    rs562780    T    C    864.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328469    GT:AD:DP:GQ:PL    1/1:0,27:27:69.18:897,69,0
11    118405343    rs512849    G    A    1019.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525118    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1052,78,0
11    118430519    rs11552421    C    T    403.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=32;Dels=0.0;FS=1.4;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.735;QD=12.62;ReadPosRankSum=-0.773;SNPEFF_AMINO_ACID_CHANGE=C9Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118430500_118430579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264020    GT:AD:DP:GQ:PL    0/1:16,16:32:99:434,0,470
11    118529017    rs6589669    T    G    185.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_AMINO_ACID_CHANGE=*455S;SNPEFF_CODON_CHANGE=tAa/tCa;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_11_118528942_118529150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000530256    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:219,18,0
11    118529044    rs11448549    C    CG    197.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=44.7982;IndelType=I;MQ=60.0;MQ0=0;QD=39.59;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_118528979_118529150;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000525958    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
11    118529069    rs6589670    G    C    319.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.59;SNPEFF_AMINO_ACID_CHANGE=P438A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118529046_118529150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450700    GT:AD:DP:GQ:PL    1/1:0,11:12:27.09:352,27,0
11    118529078    rs6589671    G    C    348.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=P435A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118529046_118529150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TREH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450700    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:382,33,0
11    118592881    rs11560856    C    T    184.46    MQFilter40    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=25.08;MQ0=9;MQRankSum=0.634;QD=6.59;ReadPosRankSum=-1.986;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AP002954.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526274    GT:AD:DP:GQ:PL    0/1:13,15:28:99:214,0,105
11    118594326    rs544096    G    A    169.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.49;MQ0=0;QD=33.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AP002954.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526274    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
11    118594517    rs11537150    A    G    155.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.24;MQ0=0;MQRankSum=-1.866;QD=15.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AP002954.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526274    GT:AD:DP:GQ:PL    0/1:4,6:10:99:185,0,120
11    118625609    rs580079    C    T    2056.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264018    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2090,154,0
11    118626286    rs11217014    T    C    579.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.357;DB;DP=36;Dels=0.0;FS=9.42;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.395;QD=16.09;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264018    GT:AD:DP:GQ:PL    0/1:18,18:36:99:609,0,549
11    118626511    rs499343    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264018    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    118627149    rs11217016    A    C    247.40    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.292;QD=12.37;ReadPosRankSum=0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264018    GT:AD:DP:GQ:PL    0/1:11,9:20:99:277,0,389
11    118627778    rs10892282    G    C    283.77    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.951;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.387;QD=13.51;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264018    GT:AD:DP:GQ:PL    0/1:11,10:21:99:314,0,349
11    118629364    rs73001486    G    A    553.60    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=4.571;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.892;QD=16.78;ReadPosRankSum=-0.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264018    GT:AD:DP:GQ:PL    0/1:14,19:33:99:584,0,385
11    118634202    rs11464765    G    GT    341.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=30.6449;IndelType=I;MQ=47.12;MQ0=0;QD=42.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525082    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:384,24,0
11    118639190    rs59173638    TC    T    671.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=71.6038;IndelType=D;MQ=56.3;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264018    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:714,51,0
11    118639315    rs7124395    A    T    81.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264018    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
11    118651809    rs555649    T    C    859.95    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.397;DB;DP=60;Dels=0.0;FS=4.148;HRun=0;HaplotypeScore=2.3149;MQ=59.23;MQ0=0;MQRankSum=-0.677;QD=14.33;ReadPosRankSum=1.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531971    GT:AD:DP:GQ:PL    0/1:31,28:60:99:890,0,924
11    118769032    rs11217081    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    118885668    rs10680026    TA    T    34.95    QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.151;DB;DP=54;FS=0.0;HRun=16;HaplotypeScore=344.5998;IndelType=D;MQ=54.99;MQ0=0;MQRankSum=-0.872;QD=0.65;ReadPosRankSum=-0.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524670    GT:AD:DP:GQ:PL    0/1:36,11:54:73.98:74,0,643
11    118886769    .    G    A    277.81    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.8;QD=19.84;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334418    GT:AD:DP:GQ:PL    0/1:5,9:14:99:308,0,168
11    118889044    rs75423227    G    T    86.66    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=4.33;ReadPosRankSum=0.175;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_118888992_118889400;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527673    GT:AD:DP:GQ:PL    0/1:15,5:20:99:117,0,477
11    118889114    rs10892321    A    G    204.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.54;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_118888992_118889400;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RPS25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527673    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:237,18,0
11    118889247    rs11440855    A    AG    294.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=21.1866;IndelType=I;MQ=60.0;MQ0=0;QD=42.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334418    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:336,21,0
11    118898435    rs111517781    AC    A    1621.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=2;HaplotypeScore=122.9244;IndelType=D;MQ=59.97;MQ0=0;QD=36.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359005    GT:AD:DP:GQ:PL    1/1:2,42:44:99:1664,129,0
11    118919206    rs568922    T    C    1374.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=29.24;SNPEFF_AMINO_ACID_CHANGE=A594;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118919188_118919275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HYOU1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535579    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1407,111,0
11    118920112    rs670192    A    G    474.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HYOU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529114    GT:AD:DP:GQ:PL    1/1:0,16:16:45.10:508,45,0
11    118920453    rs673768    T    C    4657.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=35.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HYOU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526656    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4658,340,0
11    118926720    rs470679    A    C    1271.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.32;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HYOU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353883    GT:AD:DP:GQ:PL    1/1:0,34:34:96.32:1305,96,0
11    118939774    rs4938622    T    C    938.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=34.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300793    GT:AD:DP:GQ:PL    1/1:1,25:27:72.23:972,72,0
11    118939939    rs5795166    T    TC    7621.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=183;FS=0.0;HRun=2;HaplotypeScore=428.0873;IndelType=I;MQ=60.31;MQ0=0;QD=41.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300793    GT:AD:DP:GQ:PL    1/1:2,180:183:99:7622,538,0
11    118940479    rs484263    T    C    425.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300793    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:459,39,0
11    118940957    rs1784302    C    G    3110.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6598;MQ=59.52;MQ0=0;QD=35.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300793    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3144,235,0
11    118942048    rs1784305    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529545    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    118942067    rs1786690    T    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529545    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    118942638    rs1614264    A    C    2550.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529545    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2584,196,0
11    118942654    rs10892328    T    A    1748.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=1.9663;MQ=59.39;MQ0=0;QD=29.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529545    GT:AD:DP:GQ:PL    1/1:0,55:59:99:1782,153,0
11    118942686    rs34260254    G    GT    460.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.214;DB;DP=33;FS=0.0;HRun=12;HaplotypeScore=330.7164;IndelType=I;MQ=58.17;MQ0=0;MQRankSum=-1.214;QD=13.95;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529545    GT:AD:DP:GQ:PL    1/1:13,17:33:37.86:502,38,0
11    118944675    rs3825061    C    T    1983.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=59.63;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529545    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2017,153,0
11    118949083    rs1177563    G    A    2790.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=35.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526829    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2824,217,0
11    118949101    rs192148983    C    T    1295.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=5.015;DB;DP=65;Dels=0.0;FS=3.794;HRun=0;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;MQRankSum=-0.221;QD=19.93;ReadPosRankSum=-0.797;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526829    GT:AD:DP:GQ:PL    0/1:26,39:65:99:1325,0,730
11    118949331    rs1177562    C    T    3106.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.49;MQ0=0;MQRankSum=-0.286;QD=34.14;ReadPosRankSum=-0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526829    GT:AD:DP:GQ:PL    1/1:1,90:91:99:3139,235,0
11    118949799    rs1168568    G    A    1505.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5544;MQ=58.89;MQ0=0;QD=32.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=VPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526829    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1539,117,0
11    118952173    rs15818    A    G    6213.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=194;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4447;MQ=59.9;MQ0=0;QD=31.86;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2589C9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442944    GT:AD:DP:GQ:PL    1/1:0,194:194:99:6213,469,0
11    118952371    rs4614    A    G    627.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2589C9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442944    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:661,48,0
11    118958869    rs1006195    G    T    2524.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.4;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2589C9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442944    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2558,193,0
11    118959331    rs17075    G    A    1297.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2589C9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442944    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1330,102,0
11    118959732    rs549893    C    T    2209.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2AFX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375167    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2242,169,0
11    118962696    rs111268492    CA    C    136.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=15;HaplotypeScore=96.7547;IndelType=D;MQ=56.85;MQ0=0;QD=9.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPAGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354202    GT:AD:DP:GQ:PL    1/1:2,11:15:28.49:179,28,0
11    118963291    rs28990986    C    T    143.26    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.99;MQ0=0;MQRankSum=0.627;QD=6.23;ReadPosRankSum=1.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPAGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354202    GT:AD:DP:GQ:PL    0/1:16,7:23:99:173,0,534
11    118967524    rs8551    C    T    110.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=18.5;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2589C9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442944    GT:AD:DP:GQ:PL    0/1:2,4:6:61.08:141,0,61
11    118967758    rs643788    T    C    552.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=1.81;QD=12.55;ReadPosRankSum=-0.134;SNPEFF_AMINO_ACID_CHANGE=I312V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_118967345_118968007;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPAGT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432443    GT:AD:DP:GQ:PL    0/1:22,22:44:99:582,0,690
11    118968558    .    C    T    613.60    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.877;DP=66;Dels=0.0;FS=3.877;HRun=0;HaplotypeScore=2.557;MQ=59.01;MQ0=0;MQRankSum=-1.597;QD=9.3;ReadPosRankSum=-0.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2589C9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442944    GT:AD:DP:GQ:PL    0/1:42,24:66:99:644,0,1272
11    118968959    rs10544271    TAG    T    328.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=15;FS=4.771;HRun=0;HaplotypeScore=49.0892;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.041;QD=21.87;ReadPosRankSum=-0.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2589C9.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442944    GT:AD:DP:GQ:PL    0/1:5,10:15:99:367,0,221
11    118970875    rs10892330    T    C    3056.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.78;MQ0=0;QD=35.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPAGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445653    GT:AD:DP:GQ:PL    1/1:0,85:85:99:3090,229,0
11    118970878    rs603826    A    C    1460.03    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.255;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.8;MQ0=0;MQRankSum=-1.38;QD=15.87;ReadPosRankSum=1.255;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPAGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445653    GT:AD:DP:GQ:PL    0/1:44,48:92:99:1490,0,1361
11    118971251    rs649870    A    G    205.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DB;DP=18;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.325;QD=11.4;ReadPosRankSum=-0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPAGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445653    GT:AD:DP:GQ:PL    0/1:9,9:18:99:235,0,323
11    118978411    rs7940073    G    C    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=10.38;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_118978093_118978805;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2CD2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336702    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:73,6,0
11    118981025    rs617948    A    G    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.57;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2CD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527854    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:64,0,71
11    118983681    rs682795    C    T    66.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=7.38;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2CD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336702    GT:AD:DP:GQ:PL    0/1:6,3:9:96.44:96,0,205
11    118984287    rs4938630    A    C    548.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.82;MQ0=0;QD=34.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2CD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533458    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:581,45,0
11    118985151    rs595782    T    C    172.94    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=13.3;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2CD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529874    GT:AD:DP:GQ:PL    0/1:4,9:13:99:203,0,134
11    118986659    rs608793    C    T    68.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.48;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C2CD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529874    GT:AD:DP:GQ:PL    0/1:3,3:6:97.53:99,0,98
11    118997869    rs547345    C    T    147.88    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.386;QD=14.79;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530678    GT:AD:DP:GQ:PL    0/1:3,7:10:92.86:178,0,93
11    119003322    rs662069    C    A    930.40    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.23;DB;DP=78;Dels=0.0;FS=0.904;HRun=2;HaplotypeScore=1.5362;MQ=59.7;MQ0=0;MQRankSum=1.271;QD=11.93;ReadPosRankSum=1.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527354    GT:AD:DP:GQ:PL    0/1:42,36:78:99:960,0,1212
11    119004009    rs672189    G    T    657.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.227;DB;DP=48;Dels=0.0;FS=2.157;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.309;QD=13.7;ReadPosRankSum=0.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527354    GT:AD:DP:GQ:PL    0/1:24,24:48:99:688,0,808
11    119004026    rs537153    C    T    411.32    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.018;QD=13.71;ReadPosRankSum=1.476;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527354    GT:AD:DP:GQ:PL    0/1:16,14:30:99:441,0,523
11    119004686    rs658922    T    A    195.39    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=12.21;ReadPosRankSum=0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINFP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527354    GT:AD:DP:GQ:PL    0/1:9,7:16:99:225,0,316
11    119005088    rs512703    C    T    1451.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=I478;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119004794_119006752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINFP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350777    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1485,108,0
11    119005132    rs100803    C    T    415.79    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.934;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5572;MQ=59.3;MQ0=0;MQRankSum=0.163;QD=12.6;ReadPosRankSum=0.018;SNPEFF_AMINO_ACID_CHANGE=A493V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119004794_119006752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HINFP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350777    GT:AD:DP:GQ:PL    0/1:15,18:33:99:446,0,464
11    119028813    rs626776    C    G    822.22    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.346;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.16;MQ0=0;MQRankSum=-0.228;QD=14.95;ReadPosRankSum=1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524604    GT:AD:DP:GQ:PL    0/1:29,26:55:99:852,0,967
11    119029849    rs485030    T    C    33.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524604    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
11    119030752    rs674424    T    C    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534402    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
11    119031841    rs11383101    G    GC    574.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=3;HaplotypeScore=57.1595;IndelType=I;MQ=59.91;MQ0=0;QD=38.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533694    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:616,45,0
11    119043500    rs644252    T    G    104.60    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=2.219;QD=11.62;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NLRX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292199    GT:AD:DP:GQ:PL    0/1:5,4:9:99:135,0,172
11    119043656    rs643423    C    T    582.84    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=59.5;MQ0=0;MQRankSum=1.747;QD=12.67;ReadPosRankSum=-0.674;SNPEFF_AMINO_ACID_CHANGE=P63S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119043610_119043698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NLRX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292199    GT:AD:DP:GQ:PL    0/1:21,25:46:99:613,0,571
11    119052826    rs4245191    C    A    1386.92    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=4.434;DB;DP=135;Dels=0.0;FS=0.717;HRun=0;HaplotypeScore=4.2431;MQ=58.8;MQ0=0;MQRankSum=-1.056;QD=10.27;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=A793E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119052803_119053054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NLRX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292199    GT:AD:DP:GQ:PL    0/1:80,54:135:99:1417,0,2140
11    119054488    rs10790286    C    T    1123.58    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.255;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=59.48;MQ0=0;MQRankSum=-0.188;QD=14.04;ReadPosRankSum=1.016;SNPEFF_AMINO_ACID_CHANGE=T56I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119053827_119054720;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NLRX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397884    GT:AD:DP:GQ:PL    0/1:42,38:80:99:1154,0,1283
11    119059404    rs1815811    G    A    632.74    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.043;DB;DP=47;Dels=0.0;FS=1.286;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.549;QD=13.46;ReadPosRankSum=-1.406;SNPEFF_AMINO_ACID_CHANGE=R358Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119059349_119059576;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PDZD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322712    GT:AD:DP:GQ:PL    0/1:23,24:47:99:663,0,615
11    119060963    rs45535039    T    C    684.02    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.384;DB;DP=59;Dels=0.0;FS=2.656;HRun=0;HaplotypeScore=1.7219;MQ=59.22;MQ0=0;MQRankSum=1.038;QD=11.59;ReadPosRankSum=0.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC153;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415318    GT:AD:DP:GQ:PL    0/1:32,27:59:99:714,0,977
11    119145705    rs3842642    G    GT    1037.06    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.511;DB;DP=61;FS=2.957;HRun=2;HaplotypeScore=174.6609;IndelType=I;MQ=59.98;MQ0=0;MQRankSum=0.023;QD=17.0;ReadPosRankSum=1.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264033    GT:AD:DP:GQ:PL    0/1:31,30:61:99:1076,0,939
11    119146659    rs2511854    G    C    824.39    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.535;DB;DP=52;Dels=0.0;FS=3.043;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.264;QD=15.85;ReadPosRankSum=1.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264033    GT:AD:DP:GQ:PL    0/1:25,27:52:99:854,0,728
11    119148573    rs2510152    G    T    439.11    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.291;DB;DP=38;Dels=0.0;FS=5.958;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.192;QD=11.56;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264033    GT:AD:DP:GQ:PL    0/1:22,16:38:99:469,0,702
11    119155618    rs2298650    G    T    295.28    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=26;Dels=0.0;FS=1.85;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.208;QD=11.36;ReadPosRankSum=0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264033    GT:AD:DP:GQ:PL    0/1:15,11:26:99:325,0,509
11    119168370    rs2186882    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264033    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
11    119181170    rs2249466    T    C    773.06    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.967;DB;DP=45;Dels=0.0;FS=3.217;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-1.158;QD=17.18;ReadPosRankSum=0.012;SNPEFF_AMINO_ACID_CHANGE=L600;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119181059_119181176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264036    GT:AD:DP:GQ:PL    0/1:19,26:45:99:803,0,550
11    119181674    rs2510146    G    C    513.60    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.938;DB;DP=48;Dels=0.0;FS=2.581;HRun=3;HaplotypeScore=1.4105;MQ=58.64;MQ0=0;MQRankSum=0.01;QD=10.7;ReadPosRankSum=0.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264033    GT:AD:DP:GQ:PL    0/1:28,20:48:99:544,0,764
11    119185133    rs6589731    C    T    181.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=18.1;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525555    GT:AD:DP:GQ:PL    0/1:4,6:10:99:211,0,138
11    119185347    rs6589732    G    A    499.86    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.972;DB;DP=32;Dels=0.0;FS=13.921;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.395;QD=15.62;ReadPosRankSum=-1.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525555    GT:AD:DP:GQ:PL    0/1:15,16:32:99:530,0,360
11    119185677    rs34587557    T    C    560.77    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=54;Dels=0.0;FS=1.087;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=10.38;ReadPosRankSum=0.457;SNPEFF_AMINO_ACID_CHANGE=E89G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119185543_119185750;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264036    GT:AD:DP:GQ:PL    0/1:34,20:54:99:591,0,979
11    119206375    rs2511841    G    A    566.47    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.426;DB;DP=36;Dels=0.0;FS=2.958;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.761;QD=15.74;ReadPosRankSum=-0.887;SNPEFF_AMINO_ACID_CHANGE=T181;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119205237_119208023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311413    GT:AD:DP:GQ:PL    0/1:17,19:36:99:596,0,483
11    119209979    rs9640    T    A    344.04    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=23;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.328;QD=14.96;ReadPosRankSum=0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360167    GT:AD:DP:GQ:PL    0/1:11,12:23:99:374,0,392
11    119214771    rs948413    A    G    250.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526059    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:283,24,0
11    119214798    rs948414    T    C    70.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.76;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526059    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,108
11    119216231    rs2510143    A    G    734.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=H180;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119216130_119216343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFRP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360167    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:768,60,0
11    119216504    rs3814762    C    T    647.27    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=46;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.284;QD=14.07;ReadPosRankSum=1.079;SNPEFF_AMINO_ACID_CHANGE=V136M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119216483_119216638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFRP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360167    GT:AD:DP:GQ:PL    0/1:24,22:46:99:677,0,638
11    119217254    rs883247    C    T    399.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526059    GT:AD:DP:GQ:PL    1/1:0,12:13:33.11:433,33,0
11    119227844    rs11217253    G    C    389.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=58.05;MQ0=0;QD=32.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525189    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:423,36,0
11    119228547    rs144028056    TGA    T    2650.47    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=9.791;DB;DP=175;DS;FS=5.272;HRun=0;HaplotypeScore=578.3234;IndelType=D;MQ=59.78;MQ0=0;MQRankSum=2.608;QD=15.15;ReadPosRankSum=0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525189    GT:AD:DP:GQ:PL    0/1:99,76:175:99:2690,0,4368
11    119229033    rs113808747    AT    A    204.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=11;HaplotypeScore=30.0076;IndelType=D;MQ=60.0;MQ0=0;QD=18.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532613    GT:AD:DP:GQ:PL    1/1:1,10:11:29.95:246,30,0
11    119229374    rs7937208    T    C    1027.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.17;MQ0=0;MQRankSum=-1.733;QD=36.69;ReadPosRankSum=-0.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532613    GT:AD:DP:GQ:PL    1/1:1,27:28:78.25:1060,78,0
11    119229758    rs45533837    T    C    528.36    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.287;DB;DP=53;Dels=0.0;FS=2.466;HRun=0;HaplotypeScore=2.5586;MQ=59.13;MQ0=0;MQRankSum=-1.846;QD=9.97;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=N130S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119229734_119229844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392808    GT:AD:DP:GQ:PL    0/1:31,22:53:99:558,0,979
11    119229964    rs2241646    G    A    878.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=Y103;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119229941_119230052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455332    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:911,66,0
11    119243670    rs33929148    C    T    976.63    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.941;DB;DP=58;Dels=0.0;FS=1.04;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.105;QD=16.84;ReadPosRankSum=0.603;SNPEFF_AMINO_ACID_CHANGE=R144Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119243416_119244055;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530918    GT:AD:DP:GQ:PL    0/1:26,32:58:99:1007,0,635
11    119244095    rs587985    C    T    649.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.3;MQ0=0;QD=36.06;SNPEFF_AMINO_ACID_CHANGE=P32;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119243417_119244231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260187    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:682,51,0
11    119290034    rs1054735    G    C    194.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.79;SNPEFF_AMINO_ACID_CHANGE=P161A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119290018_119290141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THY1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524970    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:227,18,0
11    119291480    rs3138091    G    A    1201.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-305N23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498979    GT:AD:DP:GQ:PL    1/1:0,39:39:96.27:1234,96,0
11    119291688    rs3751026    A    G    1131.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-305N23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498979    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1164,84,0
11    119509625    rs1022080    C    T    165.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341398    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
11    119510366    rs4438048    T    C    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341398    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
11    119510644    rs7940667    A    C    1173.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=V361G;SNPEFF_CODON_CHANGE=gTt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119510575_119510722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341398    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1207,93,0
11    119535677    .    C    CCCT    272.18    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.766;DP=21;FS=0.0;HRun=0;HaplotypeScore=65.4245;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=0.597;QD=12.96;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=-445R;SNPEFF_CODON_CHANGE=-/AGG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_11_119531702_119536007;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264025    GT:AD:DP:GQ:PL    0/1:15,6:21:99:311,0,370
11    119545224    rs113705862    T    TG    1934.47    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.835;DB;DP=150;FS=1.826;HRun=8;HaplotypeScore=439.1383;IndelType=I;MQ=59.55;MQ0=0;MQRankSum=-0.958;QD=12.9;ReadPosRankSum=0.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340882    GT:AD:DP:GQ:PL    0/1:78,71:150:99:1974,0,1409
11    119548052    rs10892429    G    A    97.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=12.23;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PVRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264025    GT:AD:DP:GQ:PL    0/1:4,4:8:99:128,0,136
11    119986167    rs503559    T    C    417.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341846    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:450,33,0
11    119989107    rs10466595    C    G    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530470    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:124,9,0
11    119989123    rs10466596    G    T    123.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=24.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530470    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
11    119993897    rs66674912    CCT    C    388.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=48.3995;IndelType=D;MQ=60.83;MQ0=0;QD=29.85;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_119993898_119993979;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM29;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000524816    GT:AD:DP:GQ:PL    1/1:3,10:13:30.10:430,30,0
11    119999191    rs569044    A    G    1086.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=36.21;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_119999108_119999203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529044    GT:AD:DP:GQ:PL    1/1:0,30:30:84.26:1119,84,0
11    120007889    rs470645    G    T    609.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529011    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:642,51,0
11    120040442    rs2444240    T    G    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AP000679.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319763    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
11    120097498    rs873059    T    C    662.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328965    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:696,51,0
11    120099658    rs2508489    A    G    702.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_AMINO_ACID_CHANGE=H210R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120099577_120101001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328965    GT:AD:DP:GQ:PL    1/1:0,25:25:63.15:735,63,0
11    120099679    rs2508490    G    A    1001.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_AMINO_ACID_CHANGE=R101H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120099577_120099949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531220    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1035,78,0
11    120175680    .    ATC    A    201.52    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=2.068;DP=52;FS=8.432;HRun=0;HaplotypeScore=409.1551;IndelType=D;MQ=41.75;MQ0=0;MQRankSum=-3.006;QD=3.88;ReadPosRankSum=-0.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260264    GT:AD:DP:GQ:PL    0/1:35,9:52:99:241,0,851
11    120175749    rs7110845    A    G    1051.55    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.632;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.04;MQ0=0;MQRankSum=-0.131;QD=10.62;ReadPosRankSum=-0.064;SNPEFF_AMINO_ACID_CHANGE=H106R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120175739_120175921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533620    GT:AD:DP:GQ:PL    0/1:52,45:99:99:1082,0,1337
11    120176310    rs12790634    G    A    1105.56    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.84;DB;DP=76;Dels=0.0;FS=1.929;HRun=1;HaplotypeScore=1.8997;MQ=59.7;MQ0=0;MQRankSum=-0.504;QD=14.55;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU2F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260264    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1136,0,1041
11    120198093    rs1893261    G    A    472.01    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.886;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5974;MQ=59.56;MQ0=0;MQRankSum=-0.524;QD=8.91;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=Q3;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120197831_120198349;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM136;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314475    GT:AD:DP:GQ:PL    0/1:36,17:53:99:502,0,1173
11    120200571    rs74883244    A    G    119.07    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.759;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=7.0;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM136;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524680    GT:AD:DP:GQ:PL    0/1:11,6:17:99:149,0,389
11    120208185    rs4936515    A    G    82.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM136;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375095    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
11    120278359    rs6589812    T    C    59.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=7.41;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356641    GT:AD:DP:GQ:PL    0/1:5,3:8:89.28:89,0,173
11    120278477    rs34172482    A    G    693.51    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.915;DB;DP=66;Dels=0.0;FS=5.246;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.02;QD=10.51;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=P29;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120278447_120278532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356641    GT:AD:DP:GQ:PL    0/1:36,30:66:99:724,0,1073
11    120278688    rs7937612    T    C    40.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356641    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:71,0,69
11    120292570    rs532006    T    A    1069.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356641    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1102,84,0
11    120308290    rs10892578    A    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356641    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:75,0,32
11    120312746    rs723937    G    A    546.22    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.188;QD=19.51;ReadPosRankSum=-2.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356641    GT:AD:DP:GQ:PL    0/1:11,17:28:99:576,0,379
11    120319064    rs2305008    A    C    1251.22    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.604;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.091;QD=13.6;ReadPosRankSum=-0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525960    GT:AD:DP:GQ:PL    0/1:52,40:92:99:1281,0,1694
11    120330149    rs2305010    G    C    126.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=8.43;ReadPosRankSum=1.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525222    GT:AD:DP:GQ:PL    0/1:10,5:15:99:156,0,377
11    120337705    rs894839    A    G    54.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.75;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356641    GT:AD:DP:GQ:PL    0/1:4,3:7:84.24:84,0,142
11    120347715    rs10892582    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531616    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    120347886    rs111312404    T    TTGTTG    717.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=42.7352;IndelType=I;MQ=57.0;MQ0=0;MQRankSum=-2.034;QD=59.83;ReadPosRankSum=-0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531616    GT:AD:DP:GQ:PL    0/1:3,8:12:99:757,0,165
11    120355230    rs503473    A    G    352.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.121;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.801;QD=12.59;ReadPosRankSum=0.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526067    GT:AD:DP:GQ:PL    0/1:14,14:28:99:383,0,433
11    120530973    rs6589829    C    T    365.46    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=22;Dels=0.0;FS=15.142;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=16.61;ReadPosRankSum=-1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    0/1:9,13:22:99:395,0,311
11    120702916    rs12283648    A    C    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
11    120732508    rs3824978    C    T    491.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:524,39,0
11    120745874    rs2230297    C    T    1933.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=H362;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120745848_120745952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1967,144,0
11    120745967    rs3824977    A    G    928.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    1/1:0,31:31:72.22:962,72,0
11    120769478    rs61409027    C    T    132.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
11    120776001    rs2156634    G    A    4206.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.367;MQ=59.82;MQ0=0;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=E425;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120775999_120776202;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4206,319,0
11    120823528    rs10750178    A    G    1158.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    1/1:1,31:32:87.29:1192,87,0
11    120823608    rs2298725    G    A    774.57    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=63;Dels=0.0;FS=3.528;HRun=0;HaplotypeScore=0.5784;MQ=58.52;MQ0=0;MQRankSum=-0.276;QD=12.29;ReadPosRankSum=-0.05;SNPEFF_AMINO_ACID_CHANGE=P545;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120823564_120823673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    0/1:35,28:63:99:805,0,1051
11    120823721    rs2298724    A    G    309.87    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.996;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.725;QD=16.31;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    0/1:7,12:19:99:340,0,207
11    120827609    rs644057    A    G    363.86    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.734;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.789;QD=13.48;ReadPosRankSum=-0.626;SNPEFF_AMINO_ACID_CHANGE=Q607;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120827489_120827662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    0/1:13,14:27:99:394,0,386
11    120831520    rs493678    T    C    147.01    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=14.7;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438375    GT:AD:DP:GQ:PL    0/1:3,7:10:99:177,0,101
11    120837821    rs2276319    G    A    292.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533291    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:325,24,0
11    120924200    rs10502246    T    C    466.13    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.944;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=14.57;ReadPosRankSum=1.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422003    GT:AD:DP:GQ:PL    0/1:18,14:32:99:496,0,601
11    120931054    rs12795310    T    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422003    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
11    120984087    rs2298478    C    G    130.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=10;Dels=0.0;FS=6.854;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=13.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    0/1:4,6:10:99:160,0,122
11    120988792    rs642548    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    120996292    rs536069    A    G    1300.47    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.782;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4115;MQ=59.42;MQ0=0;MQRankSum=-0.179;QD=16.46;ReadPosRankSum=0.352;SNPEFF_AMINO_ACID_CHANGE=A495;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120996011_120996581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1330,0,1168
11    120998942    rs10502247    C    T    1335.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.729;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.04;MQ0=0;MQRankSum=-0.48;QD=14.52;ReadPosRankSum=-0.379;SNPEFF_AMINO_ACID_CHANGE=I752;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_120998461_120999053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    0/1:46,46:92:99:1366,0,1200
11    121000212    rs643744    T    G    105.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.04;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    0/1:3,4:7:92.52:135,0,93
11    121000784    rs586473    T    C    505.59    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=34;Dels=0.0;FS=1.365;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.173;QD=14.87;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=Y935;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_121000347_121000920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    0/1:15,19:34:99:536,0,484
11    121001039    rs2282565    T    C    68.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
11    121023906    rs687329    G    A    37.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=11.761;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.2;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    0/1:4,2:6:67.19:67,0,126
11    121032978    rs526433    G    A    1732.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.68;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=S1724N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_121032784_121033079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1766,135,0
11    121037529    rs2186747    C    G    423.13    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=3.823;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.23;QD=15.11;ReadPosRankSum=-1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    0/1:13,15:28:99:453,0,361
11    121039069    rs543577    A    G    138.62    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=10.66;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264037    GT:AD:DP:GQ:PL    0/1:8,5:13:99:169,0,277
11    121175278    rs10712296    CT    C    157.71    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=3.134;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=75.0356;IndelType=D;MQ=60.9;MQ0=0;MQRankSum=0.669;QD=6.57;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SC5DL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264027    GT:AD:DP:GQ:PL    0/1:14,10:24:99:197,0,299
11    121178302    rs1061332    A    C    117.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SC5DL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524683    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
11    121232811    rs4936621    A    G    528.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=36.79;MQ0=6;QD=22.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=BMPR1APS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451822    GT:AD:DP:GQ:PL    1/1:0,24:24:51.09:561,51,0
11    121233279    rs11218271    T    C    767.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.79;MQ0=34;QD=10.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=BMPR1APS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451822    GT:AD:DP:GQ:PL    1/1:0,70:71:84.09:801,84,0
11    121348761    .    AG    A    92.62    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=2.824;DP=28;FS=10.447;HRun=1;HaplotypeScore=194.0369;IndelType=D;MQ=47.32;MQ0=0;MQRankSum=-1.839;QD=3.31;ReadPosRankSum=1.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    0/1:22,6:28:99:132,0,241
11    121358430    rs662821    C    T    80.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
11    121360884    rs560573    T    A    610.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:644,48,0
11    121367921    rs668387    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
11    121393212    rs630813    C    G    2083.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2116,163,0
11    121403229    rs636588    T    C    702.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_AMINO_ACID_CHANGE=A551;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_121403173_121403261;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:735,54,0
11    121414550    rs682021    G    A    394.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.873;MQ=56.43;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:428,33,0
11    121426207    rs556349    T    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
11    121437571    rs1784920    A    G    35.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
11    121437819    rs1699107    C    G    1129.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.29;SNPEFF_AMINO_ACID_CHANGE=Q1074E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_121437649_121437822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1162,84,0
11    121445084    rs1792126    T    C    2813.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2847,211,0
11    121447807    rs1790212    A    G    116.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
11    121456962    rs1699102    C    T    4230.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6649;MQ=59.59;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=N1246;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_121456931_121457038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,122:124:99:4231,313,0
11    121460664    rs1625828    G    A    3221.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3254,244,0
11    121461948    rs181735959    A    G    333.25    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.586;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=19.6;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    0/1:7,10:17:99:363,0,224
11    121475798    rs1784929    T    A    1446.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1479,108,0
11    121483401    rs1010159    C    T    366.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:400,30,0
11    121483651    rs1010158    G    A    177    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
11    121489416    rs1784933    G    A    1696.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1730,129,0
11    121491782    rs1792120    G    A    1266.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2064;MQ=59.38;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=V1967I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_121491773_121491947;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260197    GT:AD:DP:GQ:PL    1/1:0,37:37:96.30:1299,96,0
11    121493001    rs1614735    T    G    244.65    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.133;QD=13.59;ReadPosRankSum=0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524633    GT:AD:DP:GQ:PL    0/1:10,8:18:99:275,0,342
11    121493072    rs11454566    T    TA    156.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=9;HaplotypeScore=15.6891;IndelType=I;MQ=62.65;MQ0=0;QD=19.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524633    GT:AD:DP:GQ:PL    1/1:2,6:8:18.05:198,18,0
11    121970269    rs643925    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR125B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385236    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    122022927    rs543412    C    T    432.18    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=1.803;DB;DP=59;Dels=0.0;FS=6.585;HRun=0;HaplotypeScore=1.575;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=7.33;ReadPosRankSum=-0.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385259    GT:AD:DP:GQ:PL    0/1:39,20:59:99:462,0,1262
11    122023187    rs1834306    A    G    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.68;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-820L6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532350    GT:AD:DP:GQ:PL    0/1:3,2:5:68.42:68,0,98
11    122650172    rs4935813    C    G    941.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284273    GT:AD:DP:GQ:PL    1/1:0,28:28:75.21:974,75,0
11    122653572    rs11218809    T    C    761.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.62;MQ0=0;QD=36.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526386    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:795,60,0
11    122653596    rs139147051    C    CA    705.97    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=0.601;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=204.7628;IndelType=I;MQ=57.94;MQ0=0;MQRankSum=0.382;QD=20.76;ReadPosRankSum=1.767;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526386    GT:AD:DP:GQ:PL    0/1:18,16:34:99:745,0,463
11    122653689    rs12575062    C    A    1756.74    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.456;DB;DP=103;Dels=0.0;FS=3.341;HRun=0;HaplotypeScore=2.7218;MQ=59.55;MQ0=0;MQRankSum=0.996;QD=17.06;ReadPosRankSum=-0.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526386    GT:AD:DP:GQ:PL    0/1:49,54:103:99:1787,0,1590
11    122654056    rs2156801    G    A    169.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.05;MQ0=0;MQRankSum=-0.572;QD=21.19;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526386    GT:AD:DP:GQ:PL    0/1:2,6:8:54.29:200,0,54
11    122659691    rs2370779    T    C    1581.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284273    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1615,123,0
11    122659918    rs955051    T    G    2136.93    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=164;Dels=0.0;FS=2.848;HRun=3;HaplotypeScore=1.6828;MQ=59.69;MQ0=0;MQRankSum=-2.359;QD=13.03;ReadPosRankSum=-0.674;SNPEFF_AMINO_ACID_CHANGE=G294;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_122659808_122660016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284273    GT:AD:DP:GQ:PL    0/1:79,85:164:99:2167,0,2465
11    122665437    rs872414    A    G    1062.89    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.917;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8188;MQ=60.0;MQ0=0;MQRankSum=1.068;QD=12.96;ReadPosRankSum=-0.501;SNPEFF_AMINO_ACID_CHANGE=S336;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_122665410_122665542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284273    GT:AD:DP:GQ:PL    0/1:42,40:82:99:1093,0,1292
11    122665549    rs11218816    C    T    1022.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.27;DB;DP=72;Dels=0.0;FS=2.239;HRun=1;HaplotypeScore=1.6647;MQ=59.68;MQ0=0;MQRankSum=0.318;QD=14.2;ReadPosRankSum=-1.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526493    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1052,0,1116
11    122678728    rs12793476    A    G    2114.90    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.738;DB;DP=168;Dels=0.0;FS=0.725;HRun=0;HaplotypeScore=2.691;MQ=59.73;MQ0=0;MQRankSum=0.498;QD=12.59;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284273    GT:AD:DP:GQ:PL    0/1:87,81:168:99:2145,0,2720
11    122738062    rs71907772    CAA    C    143.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=16;HaplotypeScore=59.6845;IndelType=D;MQ=54.36;MQ0=0;QD=14.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227348    GT:AD:DP:GQ:PL    1/1:0,6:10:26.18:185,26,0
11    122738261    rs2272094    A    G    744.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=K122R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_122738117_122738263;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533709    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:778,57,0
11    122774358    rs3107629    A    T    57.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227349    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:90,9,0
11    122774453    rs3134400    G    T    878.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227349    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:912,69,0
11    122775227    rs3107630    T    C    2829.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227349    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2863,217,0
11    122805910    rs4502006    C    A    76.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.32;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227349    GT:AD:DP:GQ:PL    0/1:2,3:5:32.72:107,0,33
11    122817187    .    CT    C    73.18    QDFilter2    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=3.279;DP=51;FS=5.926;HRun=11;HaplotypeScore=173.0756;IndelType=D;MQ=59.76;MQ0=0;MQRankSum=-0.289;QD=1.43;ReadPosRankSum=-1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227349    GT:AD:DP:GQ:PL    0/1:37,12:51:99:112,0,976
11    122829813    rs7107012    G    A    73.40    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.986;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=4.08;ReadPosRankSum=-1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C11orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000227349    GT:AD:DP:GQ:PL    0/1:13,5:18:99:103,0,466
11    122849816    rs7939002    G    A    103.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=14.8;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343035    GT:AD:DP:GQ:PL    0/1:3,4:7:59.83:134,0,60
11    122928934    rs71057327    G    GA    55.74    QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=1.269;DB;DP=45;FS=12.632;HRun=18;HaplotypeScore=419.1552;IndelType=I;MQ=46.74;MQ0=0;MQRankSum=-1.469;QD=1.24;ReadPosRankSum=-0.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524590    GT:AD:DP:GQ:PL    0/1:29,8:45:80.46:95,0,80
11    122929624    rs1461496    A    G    72.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.29;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524590    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,145
11    123065683    rs2302605    C    T    165.48    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.55;MQ0=0;MQRankSum=0.597;QD=10.34;ReadPosRankSum=0.163;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_11_123065621_123065989;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448775    GT:AD:DP:GQ:PL    0/1:10,6:16:99:195,0,333
11    123396844    rs17740690    C    T    452.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.217;DB;DP=40;Dels=0.0;FS=6.884;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=2.093;QD=11.3;ReadPosRankSum=-2.121;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_123396528_123396879;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322282    GT:AD:DP:GQ:PL    0/1:20,20:40:99:482,0,601
11    123455101    rs113013432    T    TG    542.29    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=2.192;DB;DP=24;FS=0.0;HRun=5;HaplotypeScore=197.4004;IndelType=I;MQ=42.89;MQ0=0;MQRankSum=1.262;QD=22.6;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322282    GT:AD:DP:GQ:PL    0/1:7,17:24:7.23:581,0,7
11    123455124    rs116184013    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.64;MQ0=0;QD=2.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322282    GT:AD:DP:GQ:PL    1/1:1,13:14:6.02:67,6,0
11    123464637    rs1148101    G    C    121.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322282    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
11    123464721    rs2271631    A    G    704.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=28.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322282    GT:AD:DP:GQ:PL    1/1:0,25:25:66.13:737,66,0
11    123476177    rs75493628    C    T    2280.88    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.585;DB;DP=164;Dels=0.0;FS=0.61;HRun=0;HaplotypeScore=4.7615;MQ=59.72;MQ0=0;MQRankSum=-0.278;QD=13.91;ReadPosRankSum=0.116;SNPEFF_AMINO_ACID_CHANGE=A255;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123476030_123476186;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529432    GT:AD:DP:GQ:PL    0/1:77,87:164:99:2311,0,2178
11    123477352    rs2279519    G    A    690.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=E270;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123477317_123477506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529432    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:723,57,0
11    123479150    rs1148088    G    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322282    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    123480981    rs10893053    T    C    3153.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.57;MQ0=0;QD=32.51;SNPEFF_AMINO_ACID_CHANGE=H166;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123480904_123481046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450171    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3187,247,0
11    123485444    rs732211    T    C    1910.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.811;MQ=59.35;MQ0=0;QD=29.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534764    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1943,150,0
11    123485561    rs1275061    T    C    1137.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.36;MQ0=0;QD=31.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534764    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1170,90,0
11    123485750    rs1275062    G    C    53.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322282    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
11    123504959    rs1148110    C    G    143.40    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=21;Dels=0.0;FS=12.882;HRun=1;HaplotypeScore=0.9973;MQ=58.2;MQ0=0;MQRankSum=1.109;QD=6.83;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SCN3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299333    GT:AD:DP:GQ:PL    0/1:13,8:21:99:173,0,325
11    123596703    rs3183878    A    C    1177.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.053;DB;DP=33;Dels=0.0;FS=8.195;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.418;QD=35.68;ReadPosRankSum=-1.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF202;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526252    GT:AD:DP:GQ:PL    1/1:1,32:33:54.54:1210,55,0
11    123597804    rs679597    A    G    938.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF202;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526252    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:972,72,0
11    123598620    rs687414    C    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF202;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526252    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
11    123598691    rs687335    A    G    123.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF202;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526252    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:157,15,0
11    123599044    rs675172    T    C    904.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF202;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526252    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:938,72,0
11    123600475    rs1144507    A    G    1122.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.79;SNPEFF_AMINO_ACID_CHANGE=V154A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123600323_123600533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF202;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336139    GT:AD:DP:GQ:PL    1/1:0,39:39:93.24:1156,93,0
11    123676231    rs4936845    G    T    974.49    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.07;DB;DP=58;Dels=0.0;FS=1.185;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.852;QD=16.8;ReadPosRankSum=-1.399;SNPEFF_AMINO_ACID_CHANGE=T276K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123676043_123677095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6M1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309154    GT:AD:DP:GQ:PL    0/1:26,32:58:99:1004,0,881
11    123753686    rs1054041    G    A    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM225;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528595    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:70,0,64
11    123753937    rs1939927    A    G    1360.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_AMINO_ACID_CHANGE=C146R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123753922_123754059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM225;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528595    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1394,108,0
11    123754073    rs4587739    A    T    287.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.176;DB;DP=22;Dels=0.0;FS=1.808;HRun=2;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;MQRankSum=1.021;QD=13.06;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM225;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375026    GT:AD:DP:GQ:PL    0/1:11,11:22:99:317,0,305
11    123754844    rs10893099    T    C    1848.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.87;MQ0=0;QD=30.81;SNPEFF_AMINO_ACID_CHANGE=N134S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123754782_123754916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM225;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375026    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1882,144,0
11    123777049    rs10750249    G    T    188.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321355    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:221,18,0
11    123777497    rs10750250    G    A    3075.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.673;MQ=59.54;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=C120Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123777109_123778183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321355    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3109,282,0
11    123777498    rs10893102    C    T    773.94    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=5.205;DB;DP=100;Dels=0.0;FS=4.211;HRun=0;HaplotypeScore=3.7773;MQ=59.54;MQ0=0;MQRankSum=-0.49;QD=7.74;ReadPosRankSum=-0.427;SNPEFF_AMINO_ACID_CHANGE=C120;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123777109_123778183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321355    GT:AD:DP:GQ:PL    0/1:56,44:100:99:804,0,1636
11    123777536    rs7926767    G    A    2414.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=R133K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123777109_123778183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321355    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2448,196,0
11    123777736    rs10790610    T    C    1648.13    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.284;DB;DP=126;Dels=0.0;FS=6.737;HRun=0;HaplotypeScore=1.7262;MQ=59.49;MQ0=0;MQRankSum=-0.329;QD=13.08;ReadPosRankSum=-1.001;SNPEFF_AMINO_ACID_CHANGE=F200L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123777109_123778183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321355    GT:AD:DP:GQ:PL    0/1:65,61:126:99:1678,0,2031
11    123777986    rs7942047    T    C    1643.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=L283P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123777109_123778183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321355    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1677,129,0
11    123778031    rs7927385    G    A    828.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=R298K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123777109_123778183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321355    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:861,66,0
11    123778173    rs7120581    T    G    203.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.61;MQ0=0;QD=33.84;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321355    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
11    123811344    rs11219362    C    T    206.05    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.977;DB;DP=18;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=11.45;ReadPosRankSum=-1.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6T1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321252    GT:AD:DP:GQ:PL    0/1:10,8:18:99:236,0,298
11    123813823    rs7129884    G    A    658.58    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=50;Dels=0.0;FS=2.504;HRun=0;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;MQRankSum=1.593;QD=13.17;ReadPosRankSum=0.831;SNPEFF_AMINO_ACID_CHANGE=C241;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123813492_123814580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6T1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321252    GT:AD:DP:GQ:PL    0/1:26,24:50:99:689,0,790
11    123813940    rs7130003    G    C    608.77    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.753;DB;DP=54;Dels=0.0;FS=1.079;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.731;QD=11.27;ReadPosRankSum=1.11;SNPEFF_AMINO_ACID_CHANGE=L202;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123813492_123814580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6T1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321252    GT:AD:DP:GQ:PL    0/1:31,23:54:99:639,0,966
11    123814145    rs145832379    G    T    642.22    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.498;DB;DP=30;Dels=0.0;FS=1.569;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.226;QD=21.41;ReadPosRankSum=0.272;SNPEFF_AMINO_ACID_CHANGE=T134N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123813492_123814580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6T1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321252    GT:AD:DP:GQ:PL    0/1:9,21:30:99:672,0,260
11    123814489    rs4936859    A    G    1760.23    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=4.484;DB;DP=120;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=3.0679;MQ=59.81;MQ0=0;MQRankSum=-0.366;QD=14.67;ReadPosRankSum=0.371;SNPEFF_AMINO_ACID_CHANGE=S19;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123813492_123814580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6T1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321252    GT:AD:DP:GQ:PL    0/1:64,56:120:99:1790,0,1872
11    123814753    rs1476203    A    G    217.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307033    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:251,18,0
11    123847392    rs10893117    G    C    156.81    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=2.023;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=6.03;ReadPosRankSum=-1.445;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531945    GT:AD:DP:GQ:PL    0/1:19,7:26:99:187,0,592
11    123847473    rs55944888    A    G    831.36    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.807;DB;DP=46;Dels=0.0;FS=3.084;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.015;QD=18.07;ReadPosRankSum=-1.659;SNPEFF_AMINO_ACID_CHANGE=V309A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123847368_123848488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531945    GT:AD:DP:GQ:PL    0/1:15,31:46:99:861,0,431
11    123848121    rs17686210    T    C    120.53    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=2.92;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=9.27;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=K93R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123847368_123848488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531945    GT:AD:DP:GQ:PL    0/1:8,5:13:99:151,0,293
11    123848212    rs17759513    C    T    202.05    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.272;QD=11.23;ReadPosRankSum=1.087;SNPEFF_AMINO_ACID_CHANGE=G63S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123847368_123848488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531945    GT:AD:DP:GQ:PL    0/1:11,7:18:99:232,0,387
11    123848516    rs35674999    C    A    196.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.663;QD=14.04;ReadPosRankSum=-1.406;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531945    GT:AD:DP:GQ:PL    0/1:7,7:14:99:227,0,249
11    123865086    rs7944434    A    C    359.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307002    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:392,30,0
11    123865305    rs10790622    G    A    323.49    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8319;MQ=60.0;MQ0=0;MQRankSum=0.801;QD=11.98;ReadPosRankSum=-0.218;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307002    GT:AD:DP:GQ:PL    0/1:14,13:27:99:353,0,421
11    123865937    rs59283295    TTCTA    T    148.99    PASS    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=214.6872;IndelType=D;MQ=60.25;MQ0=0;MQRankSum=0.648;QD=3.46;ReadPosRankSum=0.295;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307002    GT:AD:DP:GQ:PL    0/1:34,5:43:99:188,0,401
11    123886155    rs66605425    A    G    31.43    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=43.81;MQ0=0;MQRankSum=1.589;QD=3.93;ReadPosRankSum=-1.589;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    0/1:6,2:8:61.42:61,0,164
11    123886307    rs79057843    C    T    857.08    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.487;DB;DP=73;Dels=0.0;FS=16.457;HRun=0;HaplotypeScore=0.8941;MQ=43.44;MQ0=6;MQRankSum=5.536;QD=11.74;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=A9V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    0/1:35,38:73:99:887,0,662
11    123886308    rs11219407    A    G    1833.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=43.52;MQ0=6;QD=25.46;SNPEFF_AMINO_ACID_CHANGE=A9;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    1/1:0,72:72:99:1866,171,0
11    123886320    rs12224056    A    G    505.21    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=75;Dels=0.0;FS=21.916;HRun=2;HaplotypeScore=0.9973;MQ=43.46;MQ0=6;MQRankSum=-6.042;QD=6.74;ReadPosRankSum=0.305;SNPEFF_AMINO_ACID_CHANGE=T13;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    0/1:44,31:75:99:535,0,1338
11    123886352    rs547068    T    C    302.20    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.266;DB;DP=76;Dels=0.0;FS=27.548;HRun=3;HaplotypeScore=0.0;MQ=41.45;MQ0=9;MQRankSum=-4.413;QD=3.98;ReadPosRankSum=-1.476;SNPEFF_AMINO_ACID_CHANGE=L24P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    0/1:48,27:76:99:332,0,1422
11    123886681    rs1893766    A    G    1768.65    MQFilter40    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.413;DB;DP=155;Dels=0.0;FS=0.773;HRun=0;HaplotypeScore=0.9734;MQ=34.9;MQ0=41;MQRankSum=0.183;QD=11.41;ReadPosRankSum=0.44;SNPEFF_AMINO_ACID_CHANGE=M134V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    0/1:63,92:155:99:1799,0,1300
11    123886865    rs4084209    T    A    4852.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6617;MQ=44.85;MQ0=3;QD=31.51;SNPEFF_AMINO_ACID_CHANGE=V195E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    1/1:0,154:154:99:4853,379,0
11    123886984    rs4936880    A    G    663.46    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=69;Dels=0.0;FS=0.985;HRun=1;HaplotypeScore=0.9973;MQ=54.34;MQ0=0;MQRankSum=1.591;QD=9.62;ReadPosRankSum=-1.291;SNPEFF_AMINO_ACID_CHANGE=R235G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    0/1:41,28:69:99:693,0,1327
11    123887164    rs4936881    A    C    673.48    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=52;Dels=0.0;FS=6.171;HRun=0;HaplotypeScore=0.0;MQ=52.86;MQ0=1;MQRankSum=0.82;QD=12.95;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=K295Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    0/1:25,27:52:99:703,0,733
11    123887184    rs4936882    T    G    1532.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.32;MQ0=1;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=L301;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123886282_123887217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1565,117,0
11    123887314    rs517598    T    A    151.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.92;MQ0=0;QD=25.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320891    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:184,15,0
11    123893984    rs148015773    A    C    150.31    MQFilter40;SnpCluster    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.67;MQ0=63;MQRankSum=-0.566;QD=2.0;ReadPosRankSum=-0.978;SNPEFF_AMINO_ACID_CHANGE=R89;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123893720_123894655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375024    GT:AD:DP:GQ:PL    0/1:48,27:75:39.83:180,0,40
11    123893987    rs142337884    G    A    40.24    MQFilter40;QDFilter2;SnpCluster    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=74;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=10.97;MQ0=63;MQRankSum=0.896;QD=0.54;ReadPosRankSum=1.663;SNPEFF_AMINO_ACID_CHANGE=A90T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123893720_123894655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375024    GT:AD:DP:GQ:PL    0/1:56,18:74:70.24:70,0,193
11    123893988    rs145930558    C    T    158.69    MQFilter40;SnpCluster    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=1.663;DB;DP=75;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=10.9;MQ0=64;MQRankSum=-0.678;QD=2.12;ReadPosRankSum=-1.398;SNPEFF_AMINO_ACID_CHANGE=A90V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123893720_123894655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375024    GT:AD:DP:GQ:PL    0/1:49,26:75:63.60:189,0,64
11    123894119    rs12366219    A    G    698.83    MQFilter40    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.767;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=25.81;MQ0=25;MQRankSum=2.022;QD=9.08;ReadPosRankSum=-0.32;SNPEFF_AMINO_ACID_CHANGE=M134V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123893720_123894655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375024    GT:AD:DP:GQ:PL    0/1:34,43:77:99:729,0,658
11    123894136    rs28499345    A    G    1753.03    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.088;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.97;MQ0=16;MQRankSum=-1.732;QD=23.37;ReadPosRankSum=-1.145;SNPEFF_AMINO_ACID_CHANGE=R139;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123893720_123894655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375024    GT:AD:DP:GQ:PL    1/1:1,74:75:99:1786,124,0
11    123894234    rs11219413    A    G    1503.94    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.876;DB;DP=143;Dels=0.0;FS=0.627;HRun=1;HaplotypeScore=2.8318;MQ=49.13;MQ0=2;MQRankSum=-2.073;QD=10.52;ReadPosRankSum=-1.434;SNPEFF_AMINO_ACID_CHANGE=Q172R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123893720_123894655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375024    GT:AD:DP:GQ:PL    0/1:75,68:143:99:1534,0,2361
11    123894402    rs12221656    A    G    1107.72    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.698;DB;DP=74;Dels=0.0;FS=0.95;HRun=0;HaplotypeScore=0.9578;MQ=57.83;MQ0=0;MQRankSum=-0.899;QD=14.97;ReadPosRankSum=-0.638;SNPEFF_AMINO_ACID_CHANGE=H228R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123893720_123894655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375024    GT:AD:DP:GQ:PL    0/1:33,41:74:99:1138,0,918
11    123894602    .    A    C    793.13    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DP=72;Dels=0.0;FS=4.91;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.053;QD=11.02;ReadPosRankSum=-3.281;SNPEFF_AMINO_ACID_CHANGE=K295Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123893720_123894655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375024    GT:AD:DP:GQ:PL    0/1:43,29:72:99:823,0,1313
11    123909073    rs11219419    C    G    1450.64    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.141;DB;DP=111;Dels=0.0;FS=6.489;HRun=0;HaplotypeScore=0.9958;MQ=53.12;MQ0=0;MQRankSum=-0.254;QD=13.07;ReadPosRankSum=1.631;SNPEFF_AMINO_ACID_CHANGE=L212;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    0/1:65,46:111:99:1481,0,2056
11    123909172    rs28414940    G    A    2364.86    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=5.483;DB;DP=201;Dels=0.0;FS=0.567;HRun=0;HaplotypeScore=3.1124;MQ=40.49;MQ0=13;MQRankSum=0.204;QD=11.77;ReadPosRankSum=-0.294;SNPEFF_AMINO_ACID_CHANGE=D179;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    0/1:111,90:201:99:2395,0,2475
11    123909342    rs470242    G    A    1072.02    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.437;DB;DP=108;Dels=0.0;FS=5.785;HRun=1;HaplotypeScore=1.5572;MQ=45.5;MQ0=6;MQRankSum=-1.836;QD=9.93;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=L123;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    0/1:60,47:108:99:1102,0,1934
11    123909627    rs11219420    T    C    888.42    MQFilter40    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.287;DB;DP=97;Dels=0.0;FS=20.834;HRun=0;HaplotypeScore=1.8305;MQ=31.1;MQ0=6;MQRankSum=1.714;QD=9.16;ReadPosRankSum=-0.353;SNPEFF_AMINO_ACID_CHANGE=I28V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    0/1:56,41:97:99:918,0,1178
11    123909637    rs4936889    G    T    877.51    MQFilter40    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.713;DB;DP=97;Dels=0.0;FS=16.71;HRun=0;HaplotypeScore=1.8305;MQ=33.05;MQ0=4;MQRankSum=2.022;QD=9.05;ReadPosRankSum=2.814;SNPEFF_AMINO_ACID_CHANGE=P24;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    0/1:56,41:97:99:908,0,1145
11    123909650    rs3894199    C    G    450.66    MQFilter40;SnpCluster    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.949;DB;DP=80;Dels=0.0;FS=7.088;HRun=0;HaplotypeScore=2.4839;MQ=36.14;MQ0=1;MQRankSum=0.955;QD=5.63;ReadPosRankSum=-1.487;SNPEFF_AMINO_ACID_CHANGE=G20A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    0/1:52,27:80:99:481,0,1370
11    123909653    rs4998340    G    T    484.29    MQFilter40;SnpCluster    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=83;Dels=0.0;FS=4.922;HRun=1;HaplotypeScore=1.6517;MQ=36.42;MQ0=1;MQRankSum=0.953;QD=5.83;ReadPosRankSum=-1.105;SNPEFF_AMINO_ACID_CHANGE=P19Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    0/1:55,28:83:99:514,0,1407
11    123909656    rs3894198    G    A    502.48    MQFilter40;SnpCluster    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.118;DB;DP=85;Dels=0.0;FS=6.387;HRun=0;HaplotypeScore=1.6517;MQ=37.0;MQ0=1;MQRankSum=0.631;QD=5.91;ReadPosRankSum=-0.306;SNPEFF_AMINO_ACID_CHANGE=A18V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    0/1:58,27:85:99:532,0,1481
11    123909695    rs3894197    G    C    2272.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.4;MQ0=1;QD=28.77;SNPEFF_AMINO_ACID_CHANGE=T5S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_123908773_123909717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330487    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2306,181,0
11    123965269    rs1799711    C    T    149.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=13.56;ReadPosRankSum=0.851;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10D4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525892    GT:AD:DP:GQ:PL    0/1:6,5:11:99:179,0,159
11    123988331    rs2276049    G    A    487.06    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.386;DB;DP=31;Dels=0.0;FS=5.782;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.13;QD=15.71;ReadPosRankSum=-0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360334    GT:AD:DP:GQ:PL    0/1:14,17:31:99:517,0,458
11    123990046    rs3819080    A    C    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533623    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:67,0,33
11    124005912    rs10790636    A    T    124.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360334    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
11    124007398    .    CCCTTCCTTCCTT    C    1222.58    PASS    AC=2;AF=1.00;AN=2;DP=42;FS=0.0;HRun=0;HaplotypeScore=441.4046;IndelType=D;MQ=59.11;MQ0=0;QD=29.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360334    GT:AD:DP:GQ:PL    1/1:24,18:42:54.18:1265,54,0
11    124012631    rs2276051    A    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    124015994    rs1056615    C    T    1404.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_AMINO_ACID_CHANGE=H735;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124015944_124016070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392748    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1438,108,0
11    124016366    rs2282505    C    T    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360334    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
11    124016740    rs9326269    A    T    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360334    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
11    124029037    rs4936895    G    A    460.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10D1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355343    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:493,39,0
11    124029075    rs4935866    G    A    784.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.7;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10D1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355343    GT:AD:DP:GQ:PL    1/1:0,24:24:66.19:818,66,0
11    124029541    rs4936896    A    G    3901.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=31.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR10D1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355343    GT:AD:DP:GQ:PL    1/1:0,124:124:99:3902,307,0
11    124056377    rs2512228    T    C    1386.28    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=2.632;DB;DP=98;Dels=0.0;FS=0.772;HRun=1;HaplotypeScore=1.8924;MQ=59.76;MQ0=0;MQRankSum=-1.411;QD=14.15;ReadPosRankSum=0.861;SNPEFF_AMINO_ACID_CHANGE=V134A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124055923_124056952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10D3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318666    GT:AD:DP:GQ:PL    0/1:54,44:98:99:1416,0,1616
11    124056566    rs7937809    G    A    785.50    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.172;DB;DP=64;Dels=0.0;FS=1.035;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.131;QD=12.27;ReadPosRankSum=-1.767;SNPEFF_AMINO_ACID_CHANGE=R197K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124055923_124056952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10D3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318666    GT:AD:DP:GQ:PL    0/1:33,31:64:99:815,0,978
11    124056732    rs2512227    T    G    359.78    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9657;MQ=60.0;MQ0=0;MQRankSum=-0.257;QD=11.24;ReadPosRankSum=-0.099;SNPEFF_AMINO_ACID_CHANGE=Y252*;SNPEFF_CODON_CHANGE=taT/taG;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_11_124055923_124056952;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10D3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000318666    GT:AD:DP:GQ:PL    0/1:17,15:32:99:390,0,498
11    124056787    rs2512226    G    A    553.27    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.544;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.475;QD=12.57;ReadPosRankSum=-0.718;SNPEFF_AMINO_ACID_CHANGE=V271M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124055923_124056952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10D3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318666    GT:AD:DP:GQ:PL    0/1:24,20:44:99:583,0,694
11    124078360    rs2846229    G    A    5193.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318460    GT:AD:DP:GQ:PL    1/1:0,143:143:99:5194,379,0
11    124078702    .    G    GAA    5902.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=151;FS=0.0;HRun=1;HaplotypeScore=1043.3188;IndelType=I;MQ=51.32;MQ0=1;MQRankSum=0.122;QD=37.13;ReadPosRankSum=0.732;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318460    GT:AD:DP:GQ:PL    1/1:112,47:151:99:5903,377,0
11    124078704    rs11219499    G    A    787.14    SnpCluster    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=158;Dels=0.0;FS=5.119;HRun=1;HaplotypeScore=12.4037;MQ=51.47;MQ0=1;MQRankSum=5.091;QD=4.98;ReadPosRankSum=-0.327;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318460    GT:AD:DP:GQ:PL    0/1:54,103:158:99:817,0,1224
11    124078705    rs11219500    T    A    843.13    HaplotypeScoreFilter13;SnpCluster    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=4.879;DB;DP=157;Dels=0.0;FS=3.878;HRun=0;HaplotypeScore=13.3702;MQ=51.73;MQ0=1;MQRankSum=6.039;QD=5.37;ReadPosRankSum=-0.528;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318460    GT:AD:DP:GQ:PL    0/1:55,102:157:99:873,0,1203
11    124078709    rs2512286    T    C    1108.25    SnpCluster    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.576;DB;DP=151;Dels=0.0;FS=4.989;HRun=1;HaplotypeScore=8.4769;MQ=53.16;MQ0=1;MQRankSum=-4.39;QD=7.34;ReadPosRankSum=0.343;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318460    GT:AD:DP:GQ:PL    0/1:95,56:151:99:1138,0,2895
11    124079006    rs1939863    A    G    121.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=24.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318460    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
11    124085462    rs948071    G    A    3601.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.52;MQ0=0;QD=36.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544048    GT:AD:DP:GQ:PL    1/1:1,98:99:99:3602,265,0
11    124085880    rs2466727    A    G    2872.70    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.635;DB;DP=235;Dels=0.0;FS=11.902;HRun=0;HaplotypeScore=2.7334;MQ=57.88;MQ0=0;MQRankSum=-0.543;QD=12.22;ReadPosRankSum=-0.348;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544048    GT:AD:DP:GQ:PL    0/1:126,109:235:99:2903,0,3969
11    124086175    rs2508890    T    C    2511.70    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=4.885;DB;DP=217;Dels=0.0;FS=10.326;HRun=0;HaplotypeScore=0.9995;MQ=52.61;MQ0=2;MQRankSum=-8.048;QD=11.57;ReadPosRankSum=0.541;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524943    GT:AD:DP:GQ:PL    0/1:117,100:217:99:2542,0,3596
11    124086422    rs2512284    G    A    442.99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.483;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.45;QD=12.66;ReadPosRankSum=1.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524943    GT:AD:DP:GQ:PL    0/1:20,15:35:99:473,0,701
11    124095647    rs2466615    A    C    2748.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.386;DB;DP=180;Dels=0.0;FS=6.382;HRun=0;HaplotypeScore=0.9578;MQ=59.77;MQ0=0;MQRankSum=-0.423;QD=15.27;ReadPosRankSum=1.811;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP002965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366149    GT:AD:DP:GQ:PL    0/1:90,90:180:99:2778,0,2706
11    124095884    rs2466614    A    G    3055.29    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.373;DB;DP=249;DS;Dels=0.0;FS=2.2;HRun=0;HaplotypeScore=1.9198;MQ=57.52;MQ0=0;MQRankSum=0.93;QD=12.27;ReadPosRankSum=0.949;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP002965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366149    GT:AD:DP:GQ:PL    0/1:138,111:249:99:3085,0,4162
11    124096247    rs2466613    G    A    1021.65    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.657;DB;DP=133;Dels=0.0;FS=3.667;HRun=0;HaplotypeScore=2.5585;MQ=52.18;MQ0=5;MQRankSum=0.204;QD=7.68;ReadPosRankSum=-3.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP002965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366149    GT:AD:DP:GQ:PL    0/1:84,49:133:99:1052,0,2562
11    124096275    rs2512268    T    C    721.44    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.216;DB;DP=108;Dels=0.0;FS=4.436;HRun=0;HaplotypeScore=10.9894;MQ=51.5;MQ0=4;MQRankSum=-0.762;QD=6.68;ReadPosRankSum=0.443;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP002965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366149    GT:AD:DP:GQ:PL    0/1:67,41:108:99:751,0,2052
11    124096277    rs2466612    G    A    605.08    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.704;DB;DP=106;Dels=0.0;FS=8.353;HRun=0;HaplotypeScore=10.9894;MQ=51.79;MQ0=4;MQRankSum=2.296;QD=5.71;ReadPosRankSum=1.502;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP002965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366149    GT:AD:DP:GQ:PL    0/1:74,32:106:99:635,0,2175
11    124096292    rs146368781    A    C    676.79    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.391;DB;DP=87;Dels=0.0;FS=5.322;HRun=0;HaplotypeScore=0.9998;MQ=55.39;MQ0=1;MQRankSum=0.893;QD=7.78;ReadPosRankSum=1.898;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP002965.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366149    GT:AD:DP:GQ:PL    0/1:56,31:87:99:707,0,1734
11    124120302    rs2512239    A    G    332.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341493    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:366,30,0
11    124120338    rs2512240    A    C    109.82    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.577;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.099;QD=6.1;ReadPosRankSum=-1.577;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341493    GT:AD:DP:GQ:PL    0/1:13,5:18:99:140,0,472
11    124121199    rs4268525    G    C    5225.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.046;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.377;MQ=53.65;MQ0=0;MQRankSum=-0.254;QD=34.61;ReadPosRankSum=0.531;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G7P;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000341493    GT:AD:DP:GQ:PL    1/1:1,150:151:99:5226,368,0
11    124134552    rs2466636    C    T    95.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341493    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:127,9,0
11    124134686    rs7931968    G    A    98.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.83;ReadPosRankSum=1.036;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341493    GT:AD:DP:GQ:PL    0/1:6,4:10:99:128,0,220
11    124134743    rs2466637    G    A    809.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=33.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G7P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341493    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:843,66,0
11    124135009    rs2512168    G    A    3410.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=36.27;MQ0=16;QD=25.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533406    GT:AD:DP:GQ:PL    1/1:0,131:131:99:3410,283,0
11    124135438    rs2512167    G    A    4622.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6545;MQ=59.65;MQ0=0;QD=34.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533406    GT:AD:DP:GQ:PL    1/1:0,132:133:99:4622,361,0
11    124135481    rs2466701    C    T    5186.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.037;DB;DP=142;Dels=0.0;FS=3.337;HRun=0;HaplotypeScore=4.9922;MQ=58.65;MQ0=0;MQRankSum=1.634;QD=36.52;ReadPosRankSum=-0.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533406    GT:AD:DP:GQ:PL    1/1:1,141:142:99:5187,357,0
11    124135662    rs2512166    A    G    2139.43    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=5.928;DB;DP=159;Dels=0.0;FS=2.16;HRun=0;HaplotypeScore=4.879;MQ=53.09;MQ0=3;MQRankSum=-0.492;QD=13.46;ReadPosRankSum=-0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR8G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533406    GT:AD:DP:GQ:PL    0/1:79,78:159:99:2169,0,2523
11    124179656    rs4936917    G    T    132.52    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=10.19;ReadPosRankSum=-0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357821    GT:AD:DP:GQ:PL    0/1:8,5:13:99:163,0,283
11    124179835    rs4936918    C    T    691.30    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=65;Dels=0.0;FS=8.957;HRun=0;HaplotypeScore=0.7887;MQ=59.43;MQ0=0;MQRankSum=1.896;QD=10.64;ReadPosRankSum=0.931;SNPEFF_AMINO_ACID_CHANGE=V276;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124179708_124180733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357821    GT:AD:DP:GQ:PL    0/1:41,24:65:99:721,0,1226
11    124180082    rs4936919    A    G    362.99    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.185;DB;DP=30;Dels=0.0;FS=1.367;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.187;QD=12.1;ReadPosRankSum=-0.811;SNPEFF_AMINO_ACID_CHANGE=L194P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124179708_124180733;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357821    GT:AD:DP:GQ:PL    0/1:16,14:30:99:393,0,539
11    124180282    rs7107539    A    C    406.13    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.998;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.56;QD=15.04;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=C127W;SNPEFF_CODON_CHANGE=tgT/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124179708_124180733;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357821    GT:AD:DP:GQ:PL    0/1:11,16:27:99:436,0,342
11    124253373    rs10750267    T    C    54.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.96;MQ0=2;MQRankSum=0.406;QD=6.82;ReadPosRankSum=-0.406;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375013    GT:AD:DP:GQ:PL    0/1:5,3:8:84.55:85,0,106
11    124266912    rs28398895    A    G    733.14    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.123;DB;DP=52;Dels=0.0;FS=2.573;HRun=0;HaplotypeScore=0.8667;MQ=55.32;MQ0=0;MQRankSum=2.3;QD=14.1;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=C112;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124266278_124267264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354597    GT:AD:DP:GQ:PL    0/1:24,28:52:99:763,0,775
11    124267177    rs61910862    T    C    512.29    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.613;DB;DP=66;Dels=0.0;FS=7.66;HRun=1;HaplotypeScore=0.0;MQ=41.61;MQ0=3;MQRankSum=-4.53;QD=7.76;ReadPosRankSum=-0.159;SNPEFF_AMINO_ACID_CHANGE=Q24R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124266278_124267264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354597    GT:AD:DP:GQ:PL    0/1:34,32:66:99:542,0,1035
11    124267189    rs507335    T    C    491.18    MQFilter40    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.085;DB;DP=65;Dels=0.0;FS=4.197;HRun=0;HaplotypeScore=0.0;MQ=39.83;MQ0=6;MQRankSum=-4.692;QD=7.56;ReadPosRankSum=-0.77;SNPEFF_AMINO_ACID_CHANGE=H20R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124266278_124267264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354597    GT:AD:DP:GQ:PL    0/1:34,31:65:99:521,0,889
11    124267388    rs61910864    T    A    36.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.11;MQ0=2;QD=9.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354597    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:68,6,0
11    124293767    rs2188707    G    A    191.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=19.14;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356130    GT:AD:DP:GQ:PL    0/1:4,6:10:99:221,0,111
11    124294703    rs10750270    T    C    345.88    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.338;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.185;QD=9.1;ReadPosRankSum=-0.677;SNPEFF_AMINO_ACID_CHANGE=E22G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124293807_124294789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356130    GT:AD:DP:GQ:PL    0/1:25,13:38:99:376,0,796
11    124309966    rs10893221    T    C    458.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.33;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328064    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:491,36,0
11    124310622    rs4296049    A    G    1607.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.542;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.6;MQ0=0;MQRankSum=0.282;QD=27.71;ReadPosRankSum=1.019;SNPEFF_AMINO_ACID_CHANGE=Y120;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124310022_124311054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8B8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328064    GT:AD:DP:GQ:PL    1/1:2,56:58:90.64:1640,91,0
11    124439736    rs2226753    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284287    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
11    124439829    rs7927052    C    G    194.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284287    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:227,18,0
11    124439883    rs1942660    G    A    761.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284287    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:794,63,0
11    124440617    rs12792184    C    T    1985.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8941;MQ=58.5;MQ0=0;QD=32.02;SNPEFF_AMINO_ACID_CHANGE=S218L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124439893_124441037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR8A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284287    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2019,159,0
11    124494676    rs686567    T    C    260.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284288    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:294,21,0
11    124494780    rs113773557    A    AT    1444.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=7;HaplotypeScore=80.9052;IndelType=I;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284288    GT:AD:DP:GQ:PL    1/1:2,41:43:99:1486,123,0
11    124500761    rs2156162    A    G    2025.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.6;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263593    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2058,153,0
11    124500919    rs4551782    C    A    125.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263593    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
11    124500953    rs11601766    T    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263593    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    124501921    rs2187152    A    G    1663.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263593    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1696,126,0
11    124502260    rs1047661    A    G    247.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263593    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:280,24,0
11    124508345    rs2187155    A    G    72.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TBRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284290    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
11    124739988    rs4936957    T    C    1962.43    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=3.118;DB;DP=120;Dels=0.0;FS=6.353;HRun=0;HaplotypeScore=1.973;MQ=58.84;MQ0=0;MQRankSum=1.341;QD=16.35;ReadPosRankSum=1.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397801    GT:AD:DP:GQ:PL    0/1:52,67:120:99:1992,0,1444
11    124740410    rs3923890    A    T    154.17    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=17.13;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397801    GT:AD:DP:GQ:PL    0/1:4,5:9:75.82:184,0,76
11    124742731    rs4606490    C    T    65.58    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=8.2;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397801    GT:AD:DP:GQ:PL    0/1:5,3:8:95.57:96,0,186
11    124747333    rs10790713    A    G    486.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.477;QD=19.47;ReadPosRankSum=-0.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397801    GT:AD:DP:GQ:PL    0/1:10,15:25:99:517,0,254
11    124747837    rs7933204    G    A    262.48    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=2.002;DB;DP=31;Dels=0.0;FS=3.654;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.682;QD=8.47;ReadPosRankSum=2.618;SNPEFF_AMINO_ACID_CHANGE=A975;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124747833_124748027;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538940    GT:AD:DP:GQ:PL    0/1:21,10:31:99:292,0,544
11    124750232    rs4366494    C    T    199.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526551    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:233,18,0
11    124754611    rs12823    T    A    110.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=13.86;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397801    GT:AD:DP:GQ:PL    0/1:3,5:8:99:141,0,105
11    124766591    rs4078483    C    G    102.45    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=8.54;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROBO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533337    GT:AD:DP:GQ:PL    0/1:7,5:12:99:132,0,172
11    124789755    rs3802904    T    C    1593.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=W37R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124789140_124790573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408930    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1626,129,0
11    124789828    rs78859654    A    T    607.12    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.612;DB;DP=51;Dels=0.0;FS=1.087;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=11.9;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=H61L;SNPEFF_CODON_CHANGE=cAc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124789140_124790573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408930    GT:AD:DP:GQ:PL    0/1:29,21:51:99:637,0,926
11    124792173    rs10893304    C    G    645.71    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.793;DB;DP=47;Dels=0.0;FS=4.731;HRun=1;HaplotypeScore=0.0;MQ=58.61;MQ0=0;MQRankSum=-0.297;QD=13.74;ReadPosRankSum=0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPACAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526273    GT:AD:DP:GQ:PL    0/1:23,24:47:99:676,0,683
11    124792540    rs78569253    C    A    966.50    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.594;DB;DP=77;Dels=0.0;FS=2.377;HRun=0;HaplotypeScore=1.8245;MQ=60.0;MQ0=0;MQRankSum=-0.609;QD=12.55;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=G326;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124792531_124792714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPACAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374961    GT:AD:DP:GQ:PL    0/1:40,37:77:99:996,0,1272
11    124793682    rs10790715    T    C    576.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=28.84;SNPEFF_AMINO_ACID_CHANGE=M218V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124793625_124793906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPACAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298251    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:610,51,0
11    124793716    rs10790716    G    A    201.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=11.2;ReadPosRankSum=-0.883;SNPEFF_AMINO_ACID_CHANGE=R206;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124793625_124793906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPACAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298251    GT:AD:DP:GQ:PL    0/1:9,9:18:99:232,0,315
11    124794688    rs112686308    C    T    893.91    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=2.699;DB;DP=94;Dels=0.0;FS=0.81;HRun=1;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=9.51;ReadPosRankSum=-0.881;SNPEFF_AMINO_ACID_CHANGE=E121;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124794624_124794965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPACAM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298251    GT:AD:DP:GQ:PL    0/1:58,36:94:99:924,0,1743
11    124805619    rs4254088    T    C    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPACAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298251    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    124805715    rs144195196    C    T    99.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.43;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPACAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298251    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,147
11    124856563    rs146292043    CTG    C    238.96    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=54.9288;IndelType=D;MQ=61.88;MQ0=0;MQRankSum=1.067;QD=14.06;ReadPosRankSum=1.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344762    GT:AD:DP:GQ:PL    0/1:8,9:17:99:278,0,196
11    124856951    rs4608089    C    T    881.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344762    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:915,69,0
11    124861269    rs4936967    C    T    419.21    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.156;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.675;QD=16.12;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344762    GT:AD:DP:GQ:PL    0/1:11,15:26:99:449,0,372
11    124862995    rs11605636    G    C    373.95    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.883;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.404;QD=23.37;ReadPosRankSum=-0.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344762    GT:AD:DP:GQ:PL    0/1:3,13:16:85.81:404,0,86
11    124910710    rs10750293    G    A    168.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=16.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524471    GT:AD:DP:GQ:PL    0/1:4,6:10:99:198,0,125
11    124946930    rs7103889    G    A    106.23    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=11.8;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298280    GT:AD:DP:GQ:PL    0/1:2,7:9:63.23:136,0,63
11    124947396    rs55752830    A    G    211.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.06;DB;DP=18;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=11.78;ReadPosRankSum=-1.148;SNPEFF_AMINO_ACID_CHANGE=I59V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_124947346_124947424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532000    GT:AD:DP:GQ:PL    0/1:9,9:18:99:242,0,304
11    124947476    rs77657184    T    C    153.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298280    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
11    124949665    rs55889403    A    G    137.56    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.932;QD=12.51;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298280    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,137
11    124951467    rs4396301    C    G    716.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532000    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:749,60,0
11    124952026    rs112934278    C    T    232.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.932;QD=19.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532000    GT:AD:DP:GQ:PL    0/1:4,8:12:99:263,0,129
11    124952385    rs7950127    G    C    85.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532000    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
11    124953917    rs11219893    A    C    141.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=15.75;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532000    GT:AD:DP:GQ:PL    0/1:4,5:9:99:172,0,136
11    124954652    rs4936976    G    C    261.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532000    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:294,21,0
11    124955977    rs3808995    C    T    563.03    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=38;Dels=0.0;FS=10.281;HRun=0;HaplotypeScore=0.6651;MQ=59.39;MQ0=0;MQRankSum=-0.168;QD=14.82;ReadPosRankSum=1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298280    GT:AD:DP:GQ:PL    0/1:17,20:38:99:593,0,534
11    124956298    rs3808996    C    T    319.87    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.551;QD=19.99;ReadPosRankSum=-0.551;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407458    GT:AD:DP:GQ:PL    0/1:6,10:16:99:350,0,117
11    124956316    rs74932866    T    G    48.79    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.896;QD=4.44;ReadPosRankSum=1.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407458    GT:AD:DP:GQ:PL    0/1:7,4:11:78.78:79,0,253
11    124957756    rs6590128    A    G    74.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=24.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407458    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
11    124957803    rs7929462    C    T    69.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.55;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407458    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,102
11    124958122    rs3802808    A    G    741.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407458    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:774,63,0
11    124967487    rs1043821    T    A    858.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM218;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524373    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:891,66,0
11    124967678    rs3737350    A    G    443.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM218;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524373    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:476,36,0
11    124972208    rs14065    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM218;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527766    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    124983631    rs920485    A    G    36.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-1.026;QD=7.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM218;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279968    GT:AD:DP:GQ:PL    0/1:2,3:5:61.63:67,0,62
11    124983982    rs920486    G    A    912    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.229;DB;DP=68;Dels=0.0;FS=7.086;HRun=0;HaplotypeScore=1.8455;MQ=58.98;MQ0=0;MQRankSum=-0.378;QD=13.41;ReadPosRankSum=-1.187;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM218;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279968    GT:AD:DP:GQ:PL    0/1:36,31:68:99:942,0,1116
11    125279897    .    G    GT    299.89    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.856;DP=28;FS=0.0;HRun=8;HaplotypeScore=73.3967;IndelType=I;MQ=59.52;MQ0=0;MQRankSum=0.789;QD=10.71;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKNOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298282    GT:AD:DP:GQ:PL    0/1:17,11:28:99:339,0,281
11    125280041    rs3824919    G    A    2410.46    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=165;Dels=0.0;FS=2.852;HRun=0;HaplotypeScore=3.7625;MQ=59.47;MQ0=0;MQRankSum=-0.036;QD=14.61;ReadPosRankSum=0.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKNOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298282    GT:AD:DP:GQ:PL    0/1:80,85:165:99:2440,0,2369
11    125280318    rs3824917    G    A    40.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=8.09;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKNOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298282    GT:AD:DP:GQ:PL    0/1:3,2:5:70.42:70,0,73
11    125298871    rs595849    A    G    665.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKNOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298282    GT:AD:DP:GQ:PL    1/1:0,23:24:57.13:698,57,0
11    125299738    rs3740894    C    T    218.52    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=16.81;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKNOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298282    GT:AD:DP:GQ:PL    0/1:6,7:13:99:249,0,196
11    125301587    rs1630030    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKNOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530517    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    125316073    rs34504992    T    A    1209.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FEZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528863    GT:AD:DP:GQ:PL    1/1:0,34:34:90.30:1242,90,0
11    125323965    rs11220082    C    T    316.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FEZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392709    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:349,27,0
11    125365366    .    C    T    73.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.39;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=P48S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125365110_125365511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000708.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527818    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:104,0,30
11    125442621    rs7101969    A    G    197.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EI24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529812    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
11    125452221    rs71045107    C    CT    483.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.278;DB;DP=33;FS=0.0;HRun=14;HaplotypeScore=219.5598;IndelType=I;MQ=46.93;MQ0=0;MQRankSum=-0.89;QD=14.22;ReadPosRankSum=0.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EI24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524723    GT:AD:DP:GQ:PL    1/1:11,22:33:4.07:523,4,0
11    125452300    rs74792707    A    AC    2462.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=3;HaplotypeScore=343.8309;IndelType=I;MQ=54.22;MQ0=0;QD=39.71;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_11_125452242_125452303;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EI24;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000343678    GT:AD:DP:GQ:PL    1/1:3,59:62:99:2504,181,0
11    125452313    rs4627097    A    G    1798.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=55.37;MQ0=0;QD=32.12;SNPEFF_AMINO_ACID_CHANGE=H248R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125452306_125452315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EI24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343678    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1832,141,0
11    125472042    rs3781764    G    C    105.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=10.56;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392708    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,213
11    125477849    .    T    G    88.12    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7219;MQ=48.24;MQ0=0;MQRankSum=-1.386;QD=6.78;ReadPosRankSum=2.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526213    GT:AD:DP:GQ:PL    0/1:4,9:13:84.28:118,0,84
11    125477887    rs6590152    G    A    337.61    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.612;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=53.45;MQ0=0;MQRankSum=0.788;QD=11.64;ReadPosRankSum=-0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526213    GT:AD:DP:GQ:PL    0/1:15,13:28:99:368,0,285
11    125478209    rs6590153    C    T    178.57    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.226;DB;DP=30;Dels=0.0;FS=2.863;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.317;QD=5.95;ReadPosRankSum=-0.815;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526213    GT:AD:DP:GQ:PL    0/1:21,9:30:99:209,0,697
11    125479363    rs2241502    G    A    1199.39    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=90;Dels=0.0;FS=2.858;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=13.33;ReadPosRankSum=-2.867;SNPEFF_AMINO_ACID_CHANGE=S240;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125479329_125479484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STT3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531491    GT:AD:DP:GQ:PL    0/1:48,42:90:99:1229,0,1288
11    125479496    rs2241501    C    T    662.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DB;DP=50;Dels=0.0;FS=1.142;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=13.25;ReadPosRankSum=0.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525431    GT:AD:DP:GQ:PL    0/1:25,25:50:99:692,0,732
11    125489788    rs525186    A    C    446.70    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=17.18;ReadPosRankSum=-0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392708    GT:AD:DP:GQ:PL    0/1:12,14:26:99:477,0,427
11    125497466    rs491528    G    T    76.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STT3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526364    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:106,0,67
11    125514274    rs541725    T    A    309.44    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=19;Dels=0.0;FS=12.42;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=16.29;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528761    GT:AD:DP:GQ:PL    0/1:9,10:19:99:339,0,310
11    125514573    rs521102    G    A    528.99    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.295;DB;DP=35;Dels=0.0;FS=1.945;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.155;QD=15.11;ReadPosRankSum=-2.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528761    GT:AD:DP:GQ:PL    0/1:16,19:35:99:559,0,509
11    125525195    rs506504    A    G    476.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.8;SNPEFF_AMINO_ACID_CHANGE=I427V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125525120_125525608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHEK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278916    GT:AD:DP:GQ:PL    1/1:0,15:15:42.10:510,42,0
11    125546479    rs479195    C    T    287.71    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.466;QD=15.14;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428830    GT:AD:DP:GQ:PL    0/1:9,10:19:99:318,0,274
11    125616016    rs1425840    C    T    148.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=18.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305738    GT:AD:DP:GQ:PL    0/1:2,6:8:61.24:178,0,61
11    125616483    rs498803    G    T    801.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305738    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:835,63,0
11    125616502    rs2553829    T    A    404.12    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.923;DB;DP=23;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.092;QD=17.57;ReadPosRankSum=0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305738    GT:AD:DP:GQ:PL    0/1:11,12:23:99:434,0,328
11    125617376    rs5795459    CT    C    1514.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=3;HaplotypeScore=124.5121;IndelType=D;MQ=60.46;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305738    GT:AD:DP:GQ:PL    1/1:2,42:44:99:1556,126,0
11    125617467    rs495356    G    T    456.80    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.431;DB;DP=31;Dels=0.0;FS=8.272;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.889;QD=14.74;ReadPosRankSum=-1.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305738    GT:AD:DP:GQ:PL    0/1:16,15:31:99:487,0,565
11    125617610    rs2114084    A    G    945.57    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.173;DB;DP=75;Dels=0.0;FS=4.618;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.504;QD=12.61;ReadPosRankSum=0.851;SNPEFF_AMINO_ACID_CHANGE=Q35R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125617595_125617717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437148    GT:AD:DP:GQ:PL    0/1:40,35:75:99:976,0,1311
11    125618728    rs35822751    CA    C    235.63    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=121.7186;IndelType=D;MQ=58.01;MQ0=0;MQRankSum=0.543;QD=13.09;ReadPosRankSum=0.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525969    GT:AD:DP:GQ:PL    0/1:9,9:18:99:275,0,204
11    125618730    .    CT    C    236.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DP=18;FS=0.0;HRun=1;HaplotypeScore=121.72;IndelType=D;MQ=58.01;MQ0=0;MQRankSum=0.272;QD=13.13;ReadPosRankSum=1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525969    GT:AD:DP:GQ:PL    0/1:9,9:18:99:275,0,185
11    125647121    rs548597    A    G    324.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358524    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:357,30,0
11    125647712    rs522690    T    C    130.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358524    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
11    125647982    rs1365081    C    T    181.74    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.984;QD=11.36;ReadPosRankSum=-0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358524    GT:AD:DP:GQ:PL    0/1:8,7:16:99:212,0,290
11    125648216    rs517463    C    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358524    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,106
11    125648321    rs10893426    C    T    280.33    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.758;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=12.19;ReadPosRankSum=-0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358524    GT:AD:DP:GQ:PL    0/1:11,12:23:99:310,0,354
11    125648503    rs494361    G    A    3024.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=37.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358524    GT:AD:DP:GQ:PL    1/1:0,81:81:99:3058,226,0
11    125763566    rs147661577    TC    T    380.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=99.3178;IndelType=D;MQ=44.62;MQ0=0;QD=31.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529801    GT:AD:DP:GQ:PL    1/1:4,8:12:35.89:423,36,0
11    125763581    rs80185627    T    C    268.75    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=1.371;QD=16.8;ReadPosRankSum=-0.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529801    GT:AD:DP:GQ:PL    0/1:5,11:16:79.91:299,0,80
11    125763610    rs35423925    A    AT    189.55    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=32;FS=0.0;HRun=13;HaplotypeScore=279.8197;IndelType=I;MQ=51.05;MQ0=0;MQRankSum=-0.756;QD=5.92;ReadPosRankSum=-2.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529801    GT:AD:DP:GQ:PL    0/1:21,10:32:99:229,0,190
11    125766044    rs549990    C    A    2253.06    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=158;Dels=0.0;FS=1.259;HRun=0;HaplotypeScore=1.5774;MQ=59.85;MQ0=0;MQRankSum=0.968;QD=14.26;ReadPosRankSum=0.975;SNPEFF_AMINO_ACID_CHANGE=A46S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125765802_125766225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000227474    GT:AD:DP:GQ:PL    0/1:81,77:158:99:2283,0,2368
11    125766173    rs622756    A    C    1964.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_AMINO_ACID_CHANGE=Y3D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125765802_125766225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000227474    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1998,150,0
11    125766204    rs600761    G    C    1217.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356438    GT:AD:DP:GQ:PL    1/1:0,39:39:93.30:1251,93,0
11    125766207    rs471980    C    T    1351.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_11_125765802_125766225;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000227474    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1385,102,0
11    125766339    rs552750    A    G    117.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356438    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
11    125776216    rs34692223    A    ATT    211.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=9;HaplotypeScore=36.5728;IndelType=I;MQ=57.27;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263576    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:253,18,0
11    125778074    rs5795465    AT    A    320.36    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=3.476;DB;DP=33;FS=1.711;HRun=11;HaplotypeScore=79.7387;IndelType=D;MQ=58.59;MQ0=0;MQRankSum=2.325;QD=9.71;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263576    GT:AD:DP:GQ:PL    0/1:14,19:33:99:359,0,236
11    125778451    rs551365    T    A    960.21    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.385;DB;DP=120;Dels=0.0;FS=12.012;HRun=1;HaplotypeScore=1.9494;MQ=59.81;MQ0=0;MQRankSum=0.462;QD=8.0;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263576    GT:AD:DP:GQ:PL    0/1:66,54:120:99:990,0,2229
11    125778453    rs551373    G    T    940.69    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=1.211;DB;DP=119;Dels=0.0;FS=10.297;HRun=1;HaplotypeScore=2.5278;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=7.9;ReadPosRankSum=-0.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263576    GT:AD:DP:GQ:PL    0/1:66,53:119:99:971,0,2273
11    125780194    rs2272104    C    T    1948.98    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.448;DB;DP=116;Dels=0.0;FS=6.572;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=1.199;QD=16.8;ReadPosRankSum=-0.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263576    GT:AD:DP:GQ:PL    0/1:54,62:116:99:1979,0,1749
11    125788678    rs683155    T    C    356.76    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.295;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=13.21;ReadPosRankSum=0.121;SNPEFF_AMINO_ACID_CHANGE=C264;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125788523_125788685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526875    GT:AD:DP:GQ:PL    0/1:14,13:27:99:387,0,499
11    125791017    rs635819    C    T    375.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.564;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.179;QD=14.43;ReadPosRankSum=0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-680F20.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526211    GT:AD:DP:GQ:PL    0/1:13,13:26:99:405,0,443
11    125830970    rs684535    A    T    485.82    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=39;Dels=0.0;FS=9.94;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.381;QD=12.46;ReadPosRankSum=-0.35;SNPEFF_AMINO_ACID_CHANGE=I1221N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125830574_125831000;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:20,19:39:99:516,0,565
11    125850881    rs611548    C    G    312.95    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.231;DB;DP=23;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.339;QD=13.61;ReadPosRankSum=0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:11,12:23:99:343,0,377
11    125851055    rs564214    A    G    871.44    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.147;DB;DP=58;Dels=0.0;FS=2.415;HRun=0;HaplotypeScore=1.5317;MQ=59.52;MQ0=0;MQRankSum=0.942;QD=15.02;ReadPosRankSum=-1.519;SNPEFF_AMINO_ACID_CHANGE=N1055;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125850944_125851224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:25,33:58:99:901,0,719
11    125851181    rs684805    G    A    572.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=40;Dels=0.0;FS=1.236;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.609;QD=14.32;ReadPosRankSum=-1.447;SNPEFF_AMINO_ACID_CHANGE=N1013;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125850944_125851224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:20,20:40:99:603,0,613
11    125851300    rs624070    T    C    84.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=8.49;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:4,6:10:99:115,0,142
11    125859407    rs1939986    G    T    347.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.967;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.424;QD=17.36;ReadPosRankSum=-1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:8,12:20:99:377,0,265
11    125864972    rs138741332    AAAC    A    482.04    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=23;FS=4.775;HRun=0;HaplotypeScore=130.8438;IndelType=D;MQ=58.93;MQ0=0;MQRankSum=0.067;QD=20.96;ReadPosRankSum=-0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:10,13:23:99:521,0,501
11    125865013    rs603803    A    G    145.74    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.854;QD=8.57;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:11,6:17:99:176,0,368
11    125867053    rs11220309    G    T    597.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=58.71;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:631,48,0
11    125871554    rs12274729    C    A    332.70    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=58.08;MQ0=0;MQRankSum=1.068;QD=15.12;ReadPosRankSum=0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:9,13:22:99:363,0,316
11    125871715    rs12274923    G    A    731.33    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.146;DB;DP=52;Dels=0.0;FS=4.037;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.476;QD=14.06;ReadPosRankSum=-0.942;SNPEFF_AMINO_ACID_CHANGE=A63V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125871614_125871745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531738    GT:AD:DP:GQ:PL    0/1:24,27:52:99:761,0,727
11    125871735    rs516664    C    T    808.05    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=3.884;DB;DP=49;Dels=0.0;FS=1.173;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.781;QD=16.49;ReadPosRankSum=0.524;SNPEFF_AMINO_ACID_CHANGE=A56;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125871614_125871745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531738    GT:AD:DP:GQ:PL    0/1:23,26:49:99:838,0,582
11    125873639    rs512761    G    T    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
11    125875514    rs4288765    G    A    203.48    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.793;QD=16.96;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:5,7:12:99:233,0,158
11    125891103    rs113242078    C    CA    79.74    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=69.8951;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=-0.796;QD=3.8;ReadPosRankSum=0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534818    GT:AD:DP:GQ:PL    0/1:16,5:21:99:119,0,465
11    125891269    rs3740912    C    T    787.56    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.734;DB;DP=51;Dels=0.0;FS=1.101;HRun=0;HaplotypeScore=0.5784;MQ=59.55;MQ0=0;MQRankSum=-0.01;QD=15.44;ReadPosRankSum=0.774;SNPEFF_AMINO_ACID_CHANGE=V75I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_125891143_125891415;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDON;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263577    GT:AD:DP:GQ:PL    0/1:22,28:51:99:818,0,729
11    126080757    rs608367    T    C    577.99    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.221;DB;DP=52;Dels=0.0;FS=1.338;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.019;QD=11.12;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298317    GT:AD:DP:GQ:PL    0/1:28,24:52:99:608,0,867
11    126081336    rs587891    T    C    1857.84    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=141;Dels=0.0;FS=3.244;HRun=0;HaplotypeScore=2.4932;MQ=59.34;MQ0=0;MQRankSum=-2.07;QD=13.18;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298317    GT:AD:DP:GQ:PL    0/1:73,68:141:99:1888,0,2361
11    126081403    rs2282580    T    C    1588.63    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.301;DB;DP=144;Dels=0.0;FS=0.636;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.364;QD=11.03;ReadPosRankSum=-1.484;SNPEFF_AMINO_ACID_CHANGE=Q44R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_126081345_126081587;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298317    GT:AD:DP:GQ:PL    0/1:83,60:144:99:1619,0,2444
11    126133670    rs2242390    G    A    257.70    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=13.56;ReadPosRankSum=-1.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM118B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360194    GT:AD:DP:GQ:PL    0/1:8,11:19:99:288,0,264
11    126139100    rs1786702    T    C    107.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.74;ReadPosRankSum=-1.159;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FOXRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524751    GT:AD:DP:GQ:PL    0/1:5,5:10:99:137,0,135
11    126145931    rs2276025    T    C    121.36    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=14;Dels=0.0;FS=10.414;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=8.67;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FOXRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524751    GT:AD:DP:GQ:PL    0/1:9,5:14:99:151,0,320
11    126146244    rs56321210    C    T    649.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=37.52;MQ0=0;QD=18.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FOXRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524751    GT:AD:DP:GQ:PL    1/1:1,34:35:57.17:683,57,0
11    126162468    rs3802813    G    A    342.29    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=36;Dels=0.0;FS=3.005;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.471;QD=9.51;ReadPosRankSum=0.963;SNPEFF_AMINO_ACID_CHANGE=S55N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_126162372_126162950;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TIRAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279992    GT:AD:DP:GQ:PL    0/1:21,15:36:99:372,0,606
11    126163124    rs609634    C    T    146.62    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.29;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-712L6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524964    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,139
11    126163691    rs611953    A    G    936.48    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.148;DB;DP=66;Dels=0.0;FS=8.442;HRun=0;HaplotypeScore=1.6647;MQ=59.65;MQ0=0;MQRankSum=0.852;QD=14.19;ReadPosRankSum=-0.261;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-712L6.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524964    GT:AD:DP:GQ:PL    0/1:32,34:66:99:966,0,915
11    126174038    rs3740915    C    T    158.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=13.24;ReadPosRankSum=0.583;SNPEFF_AMINO_ACID_CHANGE=H21;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_126173647_126174176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCPS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263579    GT:AD:DP:GQ:PL    0/1:6,6:12:99:189,0,171
11    126176578    rs637462    G    A    246.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.424;QD=12.34;ReadPosRankSum=1.967;SNPEFF_AMINO_ACID_CHANGE=Q105;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_126176465_126176639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCPS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263579    GT:AD:DP:GQ:PL    0/1:12,8:20:99:277,0,359
11    126201238    rs651983    G    T    913.77    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=73;Dels=0.0;FS=6.394;HRun=1;HaplotypeScore=0.6651;MQ=59.68;MQ0=0;MQRankSum=0.086;QD=12.52;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263579    GT:AD:DP:GQ:PL    0/1:39,34:73:99:944,0,1164
11    126201290    rs651922    A    G    774.33    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.562;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=0.404;QD=8.07;ReadPosRankSum=1.687;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263579    GT:AD:DP:GQ:PL    0/1:66,30:96:99:804,0,1757
11    126201403    rs616360    T    C    844.68    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.602;DB;DP=69;Dels=0.0;FS=14.038;HRun=0;HaplotypeScore=0.7887;MQ=59.67;MQ0=0;MQRankSum=-0.409;QD=12.24;ReadPosRankSum=-1.044;SNPEFF_AMINO_ACID_CHANGE=N160;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_126201300_126201445;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCPS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263579    GT:AD:DP:GQ:PL    0/1:41,28:69:99:875,0,1224
11    126201458    rs651034    A    G    676.12    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DB;DP=42;Dels=0.0;FS=3.304;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.539;QD=16.1;ReadPosRankSum=-0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263579    GT:AD:DP:GQ:PL    0/1:18,23:42:99:706,0,580
11    126213341    rs240537    G    T    152.39    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=25.4;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263579    GT:AD:DP:GQ:PL    0/1:1,5:6:19.74:182,0,20
11    126294817    rs948052    G    A    141.84    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.977;DB;DP=19;Dels=0.0;FS=9.874;HRun=0;HaplotypeScore=0.9159;MQ=57.53;MQ0=0;MQRankSum=-0.666;QD=7.47;ReadPosRankSum=-1.999;SNPEFF_AMINO_ACID_CHANGE=G132;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_126294200_126294918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416561    GT:AD:DP:GQ:PL    0/1:11,8:19:99:172,0,358
11    126301449    rs3802816    T    C    351.61    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.243;DB;DP=22;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=15.98;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416561    GT:AD:DP:GQ:PL    0/1:7,15:22:99:382,0,215
11    126301481    rs3802817    T    A    302.97    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=23.31;ReadPosRankSum=1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416561    GT:AD:DP:GQ:PL    0/1:4,9:13:99:333,0,125
11    126305279    rs4937132    C    G    354.32    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=23;Dels=0.0;FS=12.381;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.472;QD=15.41;ReadPosRankSum=-1.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526764    GT:AD:DP:GQ:PL    0/1:9,14:23:99:384,0,221
11    126307072    rs12795076    T    C    33.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416561    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
11    126310082    rs878830    A    T    431.06    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.502;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.23;MQ0=0;MQRankSum=-1.046;QD=14.37;ReadPosRankSum=1.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416561    GT:AD:DP:GQ:PL    0/1:13,17:30:99:461,0,349
11    126310299    rs3212313    T    C    37.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=3.16;ReadPosRankSum=1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ST3GAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524834    GT:AD:DP:GQ:PL    0/1:7,5:12:67.96:68,0,218
11    126315024    rs3802819    T    C    1243.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.42;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ST3GAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524834    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1276,108,0
11    126316610    rs1574534    C    T    385.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525144    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:418,33,0
11    126326568    rs3809005    T    C    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525144    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
11    127810848    rs72645493    C    G    945.44    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.022;DB;DP=86;Dels=0.0;FS=29.226;HRun=0;HaplotypeScore=1.7998;MQ=43.73;MQ0=0;MQRankSum=-4.742;QD=10.99;ReadPosRankSum=-0.066;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-676M6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526843    GT:AD:DP:GQ:PL    0/1:48,38:86:99:975,0,1381
11    128332262    rs34846069    G    A    378.67    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.634;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=22.27;ReadPosRankSum=-1.845;SNPEFF_AMINO_ACID_CHANGE=D224;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_128328656_128332471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535549    GT:AD:DP:GQ:PL    0/1:5,12:17:99:409,0,140
11    128349877    rs75615392    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
11    128355142    rs11221324    C    T    85.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=8.52;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319397    GT:AD:DP:GQ:PL    0/1:6,4:10:99:115,0,209
11    128355151    rs10893878    G    A    107.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.98;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319397    GT:AD:DP:GQ:PL    0/1:2,4:6:56.94:138,0,57
11    128638216    rs35044982    TG    T    606.05    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=3.827;DB;DP=46;FS=3.528;HRun=7;HaplotypeScore=121.8661;IndelType=D;MQ=58.21;MQ0=0;MQRankSum=1.062;QD=13.17;ReadPosRankSum=-0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FLI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281428    GT:AD:DP:GQ:PL    0/1:21,25:46:99:645,0,441
11    128642979    rs12418597    C    T    512.41    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=3.834;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.539;QD=14.23;ReadPosRankSum=-1.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FLI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527767    GT:AD:DP:GQ:PL    0/1:19,17:36:99:542,0,558
11    128652012    rs639336    G    T    1440.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FLI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281428    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1474,108,0
11    128676980    rs614613    C    T    109.43    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.776;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.743;QD=7.82;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FLI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281428    GT:AD:DP:GQ:PL    0/1:8,6:14:99:139,0,280
11    128679211    rs630797    G    C    837.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FLI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281428    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:871,66,0
11    128774474    rs11221507    T    C    308.94    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.607;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=12.87;ReadPosRankSum=-0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338350    GT:AD:DP:GQ:PL    0/1:13,11:24:99:339,0,475
11    128781339    rs6590357    T    C    2163.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3437;MQ=59.66;MQ0=0;QD=31.81;SNPEFF_AMINO_ACID_CHANGE=S57;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_128781159_128782105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338350    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2196,177,0
11    128781978    rs7118824    T    G    2881.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_AMINO_ACID_CHANGE=L270;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_128781159_128782105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338350    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2915,226,0
11    128782002    rs7118833    T    C    3088.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_AMINO_ACID_CHANGE=H278;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_128781159_128782105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338350    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3122,238,0
11    128782012    rs7102584    C    G    2835.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=Q282E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_128781159_128782105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338350    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2868,226,0
11    128782214    rs1317470    G    A    627.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533356    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:660,51,0
11    128786294    rs4937391    G    A    648.08    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=4.627;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-1.937;QD=16.62;ReadPosRankSum=0.547;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533356    GT:AD:DP:GQ:PL    0/1:17,22:39:99:678,0,408
11    128805814    rs6590359    C    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53AIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527504    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
11    128842243    rs77561606    A    T    164.44    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.464;QD=10.28;ReadPosRankSum=-1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310343    GT:AD:DP:GQ:PL    0/1:10,6:16:99:194,0,378
11    128842251    rs76301868    G    T    186.44    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5785;MQ=60.0;MQ0=0;MQRankSum=-0.396;QD=9.32;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310343    GT:AD:DP:GQ:PL    0/1:13,7:20:99:216,0,409
11    128843852    rs3796668    G    T    306.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310343    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:340,27,0
11    128846547    rs665619    C    A    1465.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534357    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1499,111,0
11    128846664    rs10893943    T    C    83.25    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.81;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534357    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:113,0,30
11    128857882    rs141233702    TAAG    T    371.44    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=3.923;DB;DP=29;FS=2.277;HRun=0;HaplotypeScore=108.0474;IndelType=D;MQ=59.95;MQ0=0;MQRankSum=-0.757;QD=12.81;ReadPosRankSum=-0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310343    GT:AD:DP:GQ:PL    0/1:19,10:29:99:410,0,1206
11    128868090    rs669678    G    A    780.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310343    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:814,60,0
11    128868239    rs670440    T    C    5276.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DB;DP=152;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.999;MQ=59.42;MQ0=0;MQRankSum=-0.08;QD=34.71;ReadPosRankSum=-1.181;SNPEFF_AMINO_ACID_CHANGE=E27;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_128868214_128868363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392657    GT:AD:DP:GQ:PL    1/1:1,151:152:99:5276,400,0
11    128932128    rs35714464    A    AG    1400.96    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.15;DB;DP=64;FS=2.649;HRun=0;HaplotypeScore=133.9976;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=0.272;QD=21.89;ReadPosRankSum=-0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525234    GT:AD:DP:GQ:PL    0/1:27,37:64:99:1440,0,886
11    128934033    rs71680745    T    TA    664.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=11;HaplotypeScore=164.0279;IndelType=I;MQ=55.57;MQ0=0;QD=17.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525234    GT:AD:DP:GQ:PL    1/1:8,18:38:88.16:706,88,0
11    128936863    rs10488728    T    C    147.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.159;QD=14.72;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310343    GT:AD:DP:GQ:PL    0/1:5,5:10:99:177,0,135
11    129061849    rs2511810    G    T    774.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310343    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:808,60,0
11    129306450    rs1873934    A    C    182.61    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.26;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281437    GT:AD:DP:GQ:PL    0/1:4,6:10:99:213,0,137
11    129306648    rs142822705    T    C    1858.20    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=3.316;DB;DP=149;Dels=0.0;FS=6.721;HRun=4;HaplotypeScore=2.8806;MQ=59.07;MQ0=0;MQRankSum=-0.777;QD=12.47;ReadPosRankSum=0.206;SNPEFF_AMINO_ACID_CHANGE=S64P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_129306646_129306946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BARX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281437    GT:AD:DP:GQ:PL    0/1:75,74:149:99:1888,0,1935
11    129735677    rs3817614    G    T    170.96    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=21.37;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531755    GT:AD:DP:GQ:PL    0/1:2,6:8:21.59:201,0,22
11    129735749    .    C    T    151.33    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DP=16;Dels=0.0;FS=3.01;HRun=3;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=1.03;QD=9.46;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531755    GT:AD:DP:GQ:PL    0/1:10,6:16:99:181,0,327
11    129743012    rs1650826    A    G    61.23    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.546;QD=6.12;ReadPosRankSum=-1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304521    GT:AD:DP:GQ:PL    0/1:7,3:10:91.22:91,0,243
11    129752991    rs2293664    G    C    670.40    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DB;DP=50;Dels=0.0;FS=3.511;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.672;QD=13.41;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529319    GT:AD:DP:GQ:PL    0/1:22,28:50:99:700,0,621
11    129753900    rs2303663    T    C    618.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.826;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9581;MQ=59.62;MQ0=0;MQRankSum=0.316;QD=10.31;ReadPosRankSum=-0.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526884    GT:AD:DP:GQ:PL    0/1:36,24:60:99:648,0,1191
11    129754103    rs3214551    T    TG    362.74    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=67.5683;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.395;QD=13.95;ReadPosRankSum=-1.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526884    GT:AD:DP:GQ:PL    0/1:16,10:26:99:402,0,594
11    129754627    rs12574106    G    T    894.87    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=84;Dels=0.0;FS=25.884;HRun=0;HaplotypeScore=0.9967;MQ=59.17;MQ0=0;MQRankSum=-0.856;QD=10.65;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526884    GT:AD:DP:GQ:PL    0/1:52,32:84:99:925,0,1566
11    129754644    rs1131972    A    G    689.01    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=80;Dels=0.0;FS=17.306;HRun=1;HaplotypeScore=0.9967;MQ=58.84;MQ0=0;MQRankSum=0.31;QD=8.61;ReadPosRankSum=-1.456;SNPEFF_AMINO_ACID_CHANGE=T246;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_129754640_129754741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304521    GT:AD:DP:GQ:PL    0/1:51,29:80:99:719,0,1471
11    129758327    rs1650823    G    A    102.30    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=12.79;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526884    GT:AD:DP:GQ:PL    0/1:3,5:8:99:132,0,101
11    129762407    rs1650820    G    A    43.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFRKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531318    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:74,0,24
11    129784456    rs2241575    G    A    42.89    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=3.57;ReadPosRankSum=-1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304538    GT:AD:DP:GQ:PL    0/1:8,4:12:72.88:73,0,297
11    129785594    rs3734073    G    A    690.64    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DB;DP=41;Dels=0.0;FS=1.216;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-1.405;QD=16.84;ReadPosRankSum=0.276;SNPEFF_AMINO_ACID_CHANGE=P546;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_129785555_129785755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533431    GT:AD:DP:GQ:PL    0/1:18,23:41:99:721,0,510
11    129785816    rs10561615    AAACT    A    233.64    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=3.536;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=97.4921;IndelType=D;MQ=54.77;MQ0=0;MQRankSum=-2.626;QD=10.16;ReadPosRankSum=-2.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304538    GT:AD:DP:GQ:PL    0/1:17,6:23:99:273,0,1264
11    129793305    rs2241573    A    G    209.55    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.1;ReadPosRankSum=-1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304538    GT:AD:DP:GQ:PL    0/1:9,7:16:99:240,0,312
11    129794950    rs2241571    T    C    1668.43    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=128;Dels=0.0;FS=0.679;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-1.243;QD=13.03;ReadPosRankSum=1.573;SNPEFF_AMINO_ACID_CHANGE=T286A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_129794777_129795124;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533431    GT:AD:DP:GQ:PL    0/1:71,57:128:99:1698,0,2054
11    129801043    rs2277033    C    T    544.81    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.676;DB;DP=41;Dels=0.0;FS=2.78;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.042;QD=13.29;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=Q183;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_129800911_129801153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533431    GT:AD:DP:GQ:PL    0/1:19,22:41:99:575,0,613
11    129801109    .    T    G    139.05    FSFilter60    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.738;DP=41;Dels=0.0;FS=63.947;HRun=2;HaplotypeScore=4.2507;MQ=51.68;MQ0=0;MQRankSum=-0.907;QD=3.39;ReadPosRankSum=-0.398;SNPEFF_AMINO_ACID_CHANGE=E161D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_129800911_129801153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533431    GT:AD:DP:GQ:PL    0/1:25,16:41:99:169,0,778
11    129804813    rs7948010    T    C    77.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.51;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304538    GT:AD:DP:GQ:PL    0/1:2,3:5:66.19:108,0,66
11    129979281    rs80111247    T    A    362.89    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=20;Dels=0.0;FS=2.831;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=18.14;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APLP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263574    GT:AD:DP:GQ:PL    0/1:7,13:20:99:393,0,240
11    129998900    rs651935    T    C    464.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APLP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263574    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:498,36,0
11    130060217    rs478745    C    T    275.43    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=18;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=15.3;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278742    GT:AD:DP:GQ:PL    0/1:8,10:18:99:305,0,232
11    130060612    rs858704    A    G    38.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278742    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:68,0,33
11    130064223    rs610005    A    G    195.13    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-1.317;QD=11.48;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278742    GT:AD:DP:GQ:PL    0/1:10,7:17:99:225,0,338
11    130064647    rs597661    G    A    267.71    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.822;DB;DP=25;Dels=0.0;FS=4.222;HRun=0;HaplotypeScore=0.0;MQ=57.17;MQ0=0;MQRankSum=-0.68;QD=10.71;ReadPosRankSum=-0.789;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278742    GT:AD:DP:GQ:PL    0/1:13,12:25:99:298,0,411
11    130064705    rs597576    A    G    108.13    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=54.65;MQ0=0;MQRankSum=0.322;QD=12.01;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278742    GT:AD:DP:GQ:PL    0/1:3,5:9:93.02:138,0,93
11    130066335    rs476106    C    T    80.81    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.259;QD=5.39;ReadPosRankSum=-2.776;SNPEFF_AMINO_ACID_CHANGE=N307;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130066234_130066343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525779    GT:AD:DP:GQ:PL    0/1:8,7:15:99:111,0,279
11    130066372    rs858713    G    A    161.55    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.743;DB;DP=14;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.0;MQ=60.77;MQ0=0;MQRankSum=0.71;QD=11.54;ReadPosRankSum=2.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530532    GT:AD:DP:GQ:PL    0/1:8,6:14:99:192,0,210
11    130066452    rs11368852    G    GC    462.06    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.935;DB;DP=39;FS=0.0;HRun=7;HaplotypeScore=87.8515;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=0.503;QD=11.85;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530532    GT:AD:DP:GQ:PL    0/1:22,17:39:99:501,0,468
11    130068554    rs11221995    C    T    175.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=14.61;ReadPosRankSum=0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524718    GT:AD:DP:GQ:PL    0/1:6,6:12:99:205,0,154
11    130069790    rs613501    T    G    682.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524718    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:715,54,0
11    130092068    rs534013    A    G    115.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.386;QD=8.25;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZBTB44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397753    GT:AD:DP:GQ:PL    0/1:6,8:14:99:145,0,213
11    130092279    rs511095    C    T    383.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.953;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.207;QD=13.71;ReadPosRankSum=0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZBTB44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397753    GT:AD:DP:GQ:PL    0/1:14,14:28:99:414,0,502
11    130103024    rs184424056    G    A    77.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.55;MQ0=0;MQRankSum=-0.358;QD=15.44;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZBTB44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525623    GT:AD:DP:GQ:PL    0/1:2,3:5:65.60:107,0,66
11    130103037    rs113298483    A    G    77.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.55;MQ0=0;MQRankSum=-0.358;QD=15.52;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZBTB44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525623    GT:AD:DP:GQ:PL    0/1:2,3:5:66.19:108,0,66
11    130103127    rs147243800    C    G    227.83    MQFilter40    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5253;MQ=37.21;MQ0=0;MQRankSum=2.069;QD=13.4;ReadPosRankSum=0.914;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZBTB44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525623    GT:AD:DP:GQ:PL    0/1:9,8:17:99:258,0,249
11    130103368    rs56052977    C    T    119.23    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.337;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.21;MQ0=0;MQRankSum=-1.072;QD=4.97;ReadPosRankSum=1.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZBTB44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525623    GT:AD:DP:GQ:PL    0/1:16,8:24:99:149,0,391
11    130275749    rs11222085    T    C    1445.02    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.207;DB;DP=126;Dels=0.0;FS=0.668;HRun=1;HaplotypeScore=4.2243;MQ=59.82;MQ0=0;MQRankSum=-0.434;QD=11.47;ReadPosRankSum=0.308;SNPEFF_AMINO_ACID_CHANGE=T190A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130274820_130276023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531752    GT:AD:DP:GQ:PL    0/1:72,53:126:99:1475,0,2230
11    130278773    rs61754851    C    T    932.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=78;Dels=0.0;FS=1.852;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-1.509;QD=11.96;ReadPosRankSum=-0.13;SNPEFF_AMINO_ACID_CHANGE=G3R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130278663_130278835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531752    GT:AD:DP:GQ:PL    0/1:39,39:78:99:963,0,1213
11    130281488    rs2131535    G    A    596.81    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.957;DB;DP=36;Dels=0.0;FS=1.421;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.578;QD=16.58;ReadPosRankSum=1.283;SNPEFF_AMINO_ACID_CHANGE=A525V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130281312_130281495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257359    GT:AD:DP:GQ:PL    0/1:15,21:36:99:627,0,440
11    130284344    rs7106106    T    C    109.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.3;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257359    GT:AD:DP:GQ:PL    0/1:2,4:6:62.49:140,0,62
11    130332338    rs11604959    A    G    803.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299164    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:836,63,0
11    130339312    rs731446    T    C    543.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.79;SNPEFF_AMINO_ACID_CHANGE=N566;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130339157_130339334;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299164    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:576,42,0
11    130342855    .    A    G    270.36    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=32;Dels=0.0;FS=1.978;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.27;QD=8.45;ReadPosRankSum=0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299164    GT:AD:DP:GQ:PL    0/1:21,11:32:99:300,0,653
11    130343023    rs61746092    C    T    614.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=44;Dels=0.0;FS=4.365;HRun=1;HaplotypeScore=2.6163;MQ=58.95;MQ0=0;MQRankSum=-1.068;QD=13.97;ReadPosRankSum=0.505;SNPEFF_AMINO_ACID_CHANGE=I720;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130342942_130346532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299164    GT:AD:DP:GQ:PL    0/1:22,22:44:99:645,0,641
11    130748131    rs3190331    A    G    69.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.64;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528555    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,165
11    130749715    rs2282528    A    G    75.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.51;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265909    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,105
11    130750642    rs2298566    A    C    1319.20    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.256;DB;DP=95;Dels=0.0;FS=16.06;HRun=1;HaplotypeScore=3.9831;MQ=59.18;MQ0=0;MQRankSum=0.078;QD=13.89;ReadPosRankSum=0.601;SNPEFF_AMINO_ACID_CHANGE=L118R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130750517_130750701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534726    GT:AD:DP:GQ:PL    0/1:47,48:95:99:1349,0,1475
11    130773076    rs3751039    G    A    413.50    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=29;Dels=0.0;FS=2.251;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=14.26;ReadPosRankSum=1.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533214    GT:AD:DP:GQ:PL    0/1:15,14:29:99:443,0,382
11    130773241    rs144457394    G    C    306.11    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.969;DB;DP=31;Dels=0.0;FS=3.39;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.487;QD=9.87;ReadPosRankSum=-1.08;SNPEFF_AMINO_ACID_CHANGE=L208V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130773150_130773279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528555    GT:AD:DP:GQ:PL    0/1:18,13:31:99:336,0,585
11    130775688    rs3198419    C    T    119.30    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.86;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531608    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:149,0,28
11    130775782    rs1865298    C    T    281.25    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.62;QD=21.63;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531608    GT:AD:DP:GQ:PL    0/1:4,9:13:99:311,0,129
11    130776437    rs1473260    C    T    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531608    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,148
11    130776454    rs1473261    A    G    143.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=14.38;ReadPosRankSum=-1.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531608    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,173
11    130776524    rs4414223    T    C    415.18    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=29;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.292;QD=14.32;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=N133S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130776520_130776616;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528555    GT:AD:DP:GQ:PL    0/1:11,18:29:99:445,0,350
11    130776613    rs4373936    A    G    404.58    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.245;QD=16.18;ReadPosRankSum=0.245;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130776520_130776616;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528555    GT:AD:DP:GQ:PL    0/1:12,13:25:99:435,0,352
11    130776646    rs4586174    T    A    218.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.893;QD=13.66;ReadPosRankSum=1.628;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531608    GT:AD:DP:GQ:PL    0/1:8,8:16:99:249,0,292
11    130776690    rs6590536    C    T    118.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.74;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531608    GT:AD:DP:GQ:PL    0/1:2,4:6:62.74:148,0,63
11    130779668    rs7107568    T    C    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531608    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    130780015    rs1781    C    T    641.64    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.467;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3537;MQ=58.2;MQ0=0;MQRankSum=-0.268;QD=12.34;ReadPosRankSum=0.351;SNPEFF_AMINO_ACID_CHANGE=P24;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130779913_130780032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528555    GT:AD:DP:GQ:PL    0/1:27,25:52:99:672,0,714
11    130780225    rs681982    C    A    1322.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.69;MQ0=0;QD=26.45;SNPEFF_AMINO_ACID_CHANGE=L618F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130780165_130780265;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265909    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1356,108,0
11    130784754    rs3751037    C    G    410.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.345;DB;DP=40;Dels=0.0;FS=2.984;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=0.741;QD=10.26;ReadPosRankSum=-0.409;SNPEFF_AMINO_ACID_CHANGE=V361L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130784161_130786404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265909    GT:AD:DP:GQ:PL    0/1:25,15:40:99:440,0,831
11    130784971    rs3751036    C    G    1110.15    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=1.923;DB;DP=73;Dels=0.0;FS=0.92;HRun=2;HaplotypeScore=2.4328;MQ=58.7;MQ0=0;MQRankSum=-0.207;QD=15.21;ReadPosRankSum=0.443;SNPEFF_AMINO_ACID_CHANGE=P288;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_130784161_130786404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265909    GT:AD:DP:GQ:PL    0/1:30,43:73:99:1140,0,894
11    131531000    rs2739287    T    C    34.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=8.59;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416661    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:64,0,70
11    131531015    rs2658857    T    G    67.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-1.231;QD=13.53;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416661    GT:AD:DP:GQ:PL    0/1:2,3:5:69.72:98,0,70
11    131781634    rs11222836    G    A    178.16    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.29;MQ0=0;MQRankSum=-0.717;QD=16.2;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436745    GT:AD:DP:GQ:PL    0/1:5,6:11:99:208,0,166
11    132081873    rs3824870    G    A    416.35    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=22;Dels=0.0;FS=5.78;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.735;QD=18.93;ReadPosRankSum=0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374784    GT:AD:DP:GQ:PL    0/1:9,13:22:99:446,0,264
11    132177633    rs2305271    A    C    1110.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=R184;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_132177583_132177717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427481    GT:AD:DP:GQ:PL    1/1:0,34:34:93.28:1143,93,0
11    132179886    rs1975613    C    T    270.20    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.899;QD=13.51;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482316    GT:AD:DP:GQ:PL    0/1:11,9:20:99:300,0,378
11    132184339    rs895924    T    C    213.45    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=19.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490356    GT:AD:DP:GQ:PL    0/1:4,7:11:99:243,0,120
11    132184394    rs730253    G    C    450.08    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.688;DB;DP=40;Dels=0.0;FS=2.846;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.251;QD=11.25;ReadPosRankSum=0.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490356    GT:AD:DP:GQ:PL    0/1:25,15:40:99:480,0,817
11    132200128    rs35501300    T    TA    518.75    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.341;DB;DP=38;FS=1.624;HRun=4;HaplotypeScore=81.2213;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.883;QD=13.65;ReadPosRankSum=-1.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374786    GT:AD:DP:GQ:PL    0/1:22,16:38:99:558,0,472
11    132306153    rs1940024    T    C    715.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.118;DB;DP=63;Dels=0.0;FS=1.065;HRun=1;HaplotypeScore=2.9331;MQ=59.34;MQ0=0;MQRankSum=1.257;QD=11.35;ReadPosRankSum=-0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPCML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331898    GT:AD:DP:GQ:PL    0/1:36,27:63:99:745,0,1099
11    132306403    rs2298479    G    A    108.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.52;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPCML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331898    GT:AD:DP:GQ:PL    0/1:3,4:7:83.19:139,0,83
11    132526865    rs1784519    A    G    38.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPCML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525412    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:68,0,33
11    133712348    rs2257010    G    A    717.61    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DB;DP=52;Dels=0.0;FS=2.944;HRun=2;HaplotypeScore=5.5163;MQ=59.38;MQ0=0;MQRankSum=0.376;QD=13.8;ReadPosRankSum=-1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299140    GT:AD:DP:GQ:PL    0/1:24,28:52:99:748,0,757
11    133712473    rs2257004    C    T    762.09    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.929;DB;DP=55;Dels=0.0;FS=2.932;HRun=2;HaplotypeScore=0.8667;MQ=59.41;MQ0=0;MQRankSum=1.06;QD=13.86;ReadPosRankSum=1.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299140    GT:AD:DP:GQ:PL    0/1:28,27:55:99:792,0,757
11    133712594    rs2282601    C    G    68.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.83;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299140    GT:AD:DP:GQ:PL    0/1:4,3:7:98.82:99,0,122
11    133714522    rs2282602    G    A    708.64    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.217;DB;DP=51;Dels=0.0;FS=1.154;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.028;QD=13.89;ReadPosRankSum=0.217;SNPEFF_AMINO_ACID_CHANGE=A50V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_133714404_133714535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299140    GT:AD:DP:GQ:PL    0/1:27,24:51:99:739,0,792
11    133714672    rs2282604    A    G    271.83    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.931;QD=20.91;ReadPosRankSum=1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299140    GT:AD:DP:GQ:PL    0/1:3,8:13:87.23:302,0,87
11    133715153    rs2298738    G    C    233.52    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.188;DB;DP=28;Dels=0.0;FS=1.542;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.235;QD=8.34;ReadPosRankSum=-0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299140    GT:AD:DP:GQ:PL    0/1:17,11:28:99:264,0,561
11    133788869    rs10791338    A    G    349.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=26.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321016    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:382,30,0
11    133789199    rs12801289    T    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321016    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
11    133790492    rs189448957    G    A    540.22    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=38;Dels=0.0;FS=1.365;HRun=0;HaplotypeScore=0.9159;MQ=59.39;MQ0=0;MQRankSum=0.578;QD=14.22;ReadPosRankSum=-0.017;SNPEFF_AMINO_ACID_CHANGE=P1043L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_133789637_133791292;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321016    GT:AD:DP:GQ:PL    0/1:20,18:38:99:570,0,523
11    133791354    rs11223621    C    T    69.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.43;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527648    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:100,0,30
11    133792021    rs596430    T    C    1171.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527648    GT:AD:DP:GQ:PL    1/1:0,36:36:93.25:1204,93,0
11    133799408    rs10894763    C    T    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.3;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321016    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:67,0,70
11    133805585    rs329637    C    T    142.67    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=23.78;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=S140;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_133805512_133805657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533871    GT:AD:DP:GQ:PL    0/1:1,5:6:18.92:173,0,19
11    133807819    rs329635    G    A    76.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=9.57;ReadPosRankSum=1.368;SNPEFF_AMINO_ACID_CHANGE=I139;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_133807705_133807856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533160    GT:AD:DP:GQ:PL    0/1:4,4:8:99:107,0,119
11    133814191    rs595986    A    G    353.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.779;DB;DP=30;Dels=0.0;FS=1.455;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.498;QD=11.79;ReadPosRankSum=-0.041;SNPEFF_AMINO_ACID_CHANGE=Y101;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_133814115_133814261;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533160    GT:AD:DP:GQ:PL    0/1:15,15:30:99:384,0,465
11    133815981    rs10894768    C    G    115.34    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=2.398;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=9.61;ReadPosRankSum=1.635;SNPEFF_AMINO_ACID_CHANGE=P126;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_133815956_133816153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526663    GT:AD:DP:GQ:PL    0/1:7,5:12:99:145,0,236
11    134046316    .    G    A    231.12    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DP=40;Dels=0.0;FS=8.158;HRun=0;HaplotypeScore=3.0489;MQ=57.66;MQ0=0;MQRankSum=1.109;QD=5.78;ReadPosRankSum=0.292;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534290    GT:AD:DP:GQ:PL    0/1:25,15:40:99:261,0,610
11    134054705    rs10685498    T    TACAC    1719.42    PASS    AB=0.799;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.399;DB;DP=142;FS=7.745;HRun=0;HaplotypeScore=880.8302;IndelType=I;MQ=54.67;MQ0=0;MQRankSum=-1.243;QD=12.02;ReadPosRankSum=-1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534548    GT:AD:DP:GQ:PL    0/1:105,26:142:99:1758,0,1347
11    134072910    rs2305380    C    T    282.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=18.85;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534548    GT:AD:DP:GQ:PL    0/1:5,10:15:99:313,0,164
11    134073154    rs2305378    A    G    281.23    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.099;QD=12.78;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534548    GT:AD:DP:GQ:PL    0/1:12,10:22:99:311,0,380
11    134105030    rs1259022    A    G    440.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9931;MQ=60.0;MQ0=0;MQRankSum=-1.504;QD=29.36;ReadPosRankSum=1.504;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281187    GT:AD:DP:GQ:PL    1/1:1,14:15:1.49:470,1,0
11    134128313    rs11223738    G    T    152.90    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=21.84;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525961    GT:AD:DP:GQ:PL    0/1:2,5:7:53.60:183,0,54
11    134151039    rs11223743    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389887    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
11    134151975    rs472287    G    C    136.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.95;MQ0=0;QD=22.73;SNPEFF_AMINO_ACID_CHANGE=R163P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_134151919_134152014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389887    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:169,12,0
11    134152030    rs10791352    G    A    134.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.03;MQ0=0;QD=26.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389887    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
11    134158458    rs959046    C    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389887    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
11    134161970    .    C    CT    637.48    PASS    AC=2;AF=1.00;AN=2;DP=20;FS=0.0;HRun=6;HaplotypeScore=45.124;IndelType=I;MQ=60.54;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532985    GT:AD:DP:GQ:PL    1/1:2,18:20:54.17:680,54,0
11    134162866    rs1144223    G    A    257.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532985    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
11    134177275    rs2510356    C    T    204.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389887    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
11    134179397    rs573028    C    T    258.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389887    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:291,21,0
11    134180695    rs526507    G    C    248.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431683    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
11    134181101    rs1144218    T    C    3348.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431683    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3349,253,0
11    134182135    rs751719    T    C    1435.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=37.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431683    GT:AD:DP:GQ:PL    1/1:0,37:38:99:1468,111,0
11    134182375    rs2509062    G    A    1122.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=V474M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_134182243_134182383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431683    GT:AD:DP:GQ:PL    1/1:0,34:34:84.28:1156,84,0
11    134182856    rs1144216    A    G    208.77    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.722;QD=10.99;ReadPosRankSum=-1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431683    GT:AD:DP:GQ:PL    0/1:10,9:19:99:239,0,317
11    134184141    rs1144214    C    T    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431683    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
11    134188408    rs1144213    T    C    809.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410100    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:843,66,0
11    134188414    rs578825    T    C    856.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410100    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:889,69,0
11    134188542    rs481252    T    C    2739.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=F599;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_134188525_134188641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431683    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2773,220,0
11    134188851    rs5795879    A    AT    234.62    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.395;DB;DP=51;FS=2.917;HRun=15;HaplotypeScore=423.0607;IndelType=I;MQ=55.8;MQ0=0;MQRankSum=-0.395;QD=4.6;ReadPosRankSum=-1.344;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410100    GT:AD:DP:GQ:PL    0/1:32,16:51:80.75:274,0,81
11    134214407    rs36018127    T    TG    568.67    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=60;FS=6.218;HRun=4;HaplotypeScore=163.3912;IndelType=I;MQ=51.43;MQ0=1;MQRankSum=-4.788;QD=8.89;ReadPosRankSum=1.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339772    GT:AD:DP:GQ:PL    0/1:41,23:60:99:608,0,1049
11    134214445    rs2581881    G    C    199.79    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=49.38;MQ0=4;MQRankSum=-2.763;QD=5.26;ReadPosRankSum=-1.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339772    GT:AD:DP:GQ:PL    0/1:23,14:38:99:230,0,692
11    134234406    rs4262740    A    T    838.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339772    GT:AD:DP:GQ:PL    1/1:0,28:28:72.16:871,72,0
11    134237113    rs10791357    C    A    37.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531081    GT:AD:DP:GQ:PL    0/1:4,2:6:67.94:68,0,113
11    134238389    rs3741100    G    C    154.03    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.896;QD=14.0;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531081    GT:AD:DP:GQ:PL    0/1:4,7:11:99:184,0,134
11    134240142    rs10791358    T    C    755.25    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.587;DB;DP=48;Dels=0.0;FS=1.49;HRun=0;HaplotypeScore=1.8245;MQ=58.55;MQ0=0;MQRankSum=-1.496;QD=15.73;ReadPosRankSum=-1.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339772    GT:AD:DP:GQ:PL    0/1:21,27:48:99:785,0,568
11    134241094    rs4937880    A    G    602.39    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.017;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=0.589;QD=17.21;ReadPosRankSum=-0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339772    GT:AD:DP:GQ:PL    0/1:14,21:35:99:632,0,431
11    134244123    rs3741097    C    G    673.99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.271;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=58.89;MQ0=0;MQRankSum=-0.09;QD=10.7;ReadPosRankSum=0.215;SNPEFF_AMINO_ACID_CHANGE=T560;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_11_134244039_134244150;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLB1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339772    GT:AD:DP:GQ:PL    0/1:36,27:63:99:704,0,1018
11    134244322    rs893947    A    C    61.54    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=6.84;ReadPosRankSum=-2.219;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=B3GAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312527    GT:AD:DP:GQ:PL    0/1:5,4:9:91.53:92,0,185
11    134320697    .    AC    A    69.60    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DP=18;FS=0.0;HRun=1;HaplotypeScore=224.9227;IndelType=D;MQ=42.81;MQ0=0;MQRankSum=-2.4;QD=3.87;ReadPosRankSum=0.667;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AP003971.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401230    GT:AD:DP:GQ:PL    0/1:13,5:18:42.83:109,0,43
11    134320699    .    ACACACACACAC    A    445.51    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DP=18;FS=0.0;HRun=0;HaplotypeScore=266.7072;IndelType=D;MQ=42.81;MQ0=0;MQRankSum=-1.656;QD=24.75;ReadPosRankSum=-0.312;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AP003971.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401230    GT:AD:DP:GQ:PL    0/1:13,5:18:99:485,0,530
11    134605091    rs35868113    T    C    37.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.33;MQ0=0;MQRankSum=-0.727;QD=9.49;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-469N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513405    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:68,0,30
11    134605395    rs12786871    G    A    66.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.06;MQ0=1;QD=6.02;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-469N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513405    GT:AD:DP:GQ:PL    1/1:0,10:11:11.97:99,12,0
11    134605647    rs113767151    A    G    236.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.55;MQ0=4;QD=15.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-469N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513405    GT:AD:DP:GQ:PL    1/1:1,14:15:21.06:269,21,0
11    134605754    .    C    T    43.34    MQFilter40    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=35.64;MQ0=4;MQRankSum=0.248;QD=3.33;ReadPosRankSum=-1.203;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-469N6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513405    GT:AD:DP:GQ:PL    0/1:10,3:13:73.33:73,0,90
12    68460    .    C    G    432.30    MQFilter40;QDFilter2    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DP=232;DS;Dels=0.0;FS=3.161;HRun=0;HaplotypeScore=0.0;MQ=27.71;MQ0=32;MQRankSum=-2.531;QD=1.86;ReadPosRankSum=-0.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC215219.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458783    GT:AD:DP:GQ:PL    0/1:165,67:232:99:462,0,3025
12    68520    .    C    T    47.23    MQFilter40;QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=5.429;DP=222;Dels=0.0;FS=2.351;HRun=1;HaplotypeScore=1.367;MQ=17.67;MQ0=46;MQRankSum=-0.739;QD=0.21;ReadPosRankSum=-0.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC215219.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458783    GT:AD:DP:GQ:PL    0/1:176,46:222:77.22:77,0,1682
12    73498    .    T    C    130.18    MQFilter40    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.718;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.67;MQ0=10;MQRankSum=0.08;QD=2.66;ReadPosRankSum=-1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC215219.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504074    GT:AD:DP:GQ:PL    0/1:38,11:49:99:160,0,768
12    84856    .    G    T    67.01    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.25;MQ0=0;MQRankSum=0.322;QD=8.38;ReadPosRankSum=1.221;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:5,3:8:97:97,0,161
12    84871    .    G    C    62.94    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.24;MQ0=0;MQRankSum=-0.296;QD=6.29;ReadPosRankSum=1.386;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:7,3:10:92.93:93,0,209
12    84963    .    T    C    32.98    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.477;DP=32;Dels=0.0;FS=9.046;HRun=0;HaplotypeScore=0.0;MQ=35.53;MQ0=4;MQRankSum=-1.412;QD=1.03;ReadPosRankSum=0.821;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:24,8:32:62.97:63,0,648
12    85105    .    G    A    345.55    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.864;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.79;MQ0=0;MQRankSum=-3.222;QD=7.35;ReadPosRankSum=0.662;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:31,16:47:99:376,0,865
12    86356    .    G    A    150.36    MQFilter40    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=3.279;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9649;MQ=26.43;MQ0=3;MQRankSum=-0.27;QD=6.01;ReadPosRankSum=0.193;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:17,8:25:99:180,0,245
12    86364    .    T    C    116.39    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.734;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.8177;MQ=27.23;MQ0=3;MQRankSum=-0.058;QD=3.88;ReadPosRankSum=-0.867;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:21,9:30:99:146,0,350
12    86381    .    C    G    352.87    MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=27.38;MQ0=7;MQRankSum=0.745;QD=7.84;ReadPosRankSum=0.944;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:29,16:45:99:383,0,374
12    86386    .    C    T    382.02    MQFilter40    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=26.81;MQ0=8;MQRankSum=1.003;QD=8.13;ReadPosRankSum=1.162;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:31,16:47:99:412,0,361
12    86584    .    T    C    122.99    MQFilter40;QDFilter2    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.463;DP=201;DS;Dels=0.0;FS=8.637;HRun=1;HaplotypeScore=1.7608;MQ=17.95;MQ0=23;MQRankSum=1.669;QD=0.61;ReadPosRankSum=-0.811;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:156,45:201:99:153,0,587
12    86754    .    C    T    303.33    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.184;DP=100;Dels=0.0;FS=3.646;HRun=1;HaplotypeScore=0.0;MQ=23.64;MQ0=22;MQRankSum=1.776;QD=3.03;ReadPosRankSum=0.049;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:70,30:100:99:333,0,596
12    86808    .    G    A    125.65    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.744;DP=90;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=18.43;MQ0=26;MQRankSum=0.318;QD=1.4;ReadPosRankSum=0.504;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    0/1:72,18:90:99:156,0,546
12    86886    rs150518578    G    C    228.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=19.18;MQ0=8;QD=7.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400706    GT:AD:DP:GQ:PL    1/1:0,31:31:24.05:261,24,0
12    87870    .    G    A    129.70    MQFilter40;QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DP=194;Dels=0.0;FS=4.892;HRun=0;HaplotypeScore=2.8668;MQ=34.27;MQ0=33;MQRankSum=-5.588;QD=0.67;ReadPosRankSum=2.371;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000543282    GT:AD:DP:GQ:PL    0/1:151,43:194:99:160,0,3498
12    87997    .    T    C    177.37    MQFilter40;QDFilter2    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.794;DP=118;Dels=0.0;FS=4.931;HRun=0;HaplotypeScore=2.5769;MQ=25.29;MQ0=41;MQRankSum=-0.842;QD=1.5;ReadPosRankSum=1.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535849    GT:AD:DP:GQ:PL    0/1:86,32:118:99:207,0,1417
12    88029    .    A    G    117.25    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.889;DP=90;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=20.99;MQ0=40;MQRankSum=-1.27;QD=1.3;ReadPosRankSum=-1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535849    GT:AD:DP:GQ:PL    0/1:75,15:90:99:147,0,944
12    88111    .    C    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.12;MQ0=8;QD=5.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX11L8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535849    GT:AD:DP:GQ:PL    1/1:0,13:13:9.02:100,9,0
12    88775    .    A    G    182.49    MQFilter40;QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DP=148;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.79;MQ0=31;MQRankSum=0.262;QD=1.23;ReadPosRankSum=-0.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:116,32:148:99:212,0,582
12    88799    .    T    G    192.74    MQFilter40    AC=2;AF=1.00;AN=2;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=9.45;MQ0=35;QD=2.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    1/1:0,93:93:29.86:226,30,0
12    89564    .    G    A    53.67    MQFilter40    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.52;MQ0=8;MQRankSum=0.937;QD=3.58;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:11,4:15:83.66:84,0,113
12    89710    .    G    A    62.46    MQFilter40;QDFilter2    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=2.06;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.55;MQ0=38;MQRankSum=0.951;QD=1.08;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:50,8:58:56.85:92,0,57
12    89818    .    C    G    43.72    MQFilter40;QDFilter2    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=0.252;DP=77;Dels=0.0;FS=1.904;HRun=1;HaplotypeScore=0.7887;MQ=17.77;MQ0=32;MQRankSum=0.549;QD=0.57;ReadPosRankSum=0.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:69,8:77:73.71:74,0,689
12    89912    .    C    T    42.48    MQFilter40;QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.2851;MQ=14.65;MQ0=27;MQRankSum=0.983;QD=0.79;ReadPosRankSum=-1.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:43,11:54:72.47:72,0,288
12    89927    .    T    A    88.19    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.88;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8188;MQ=12.74;MQ0=28;MQRankSum=2.357;QD=1.84;ReadPosRankSum=-0.524;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:40,8:48:99:118,0,115
12    90736    rs71227148    T    C    84.97    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.728;DB;DP=42;Dels=0.0;FS=21.795;HRun=1;HaplotypeScore=0.9578;MQ=29.51;MQ0=10;MQRankSum=-3.818;QD=2.02;ReadPosRankSum=0.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:18,24:42:99:115,0,553
12    90902    rs138004684    C    T    696.98    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=74;Dels=0.0;FS=6.799;HRun=0;HaplotypeScore=2.8198;MQ=45.24;MQ0=0;MQRankSum=1.396;QD=9.42;ReadPosRankSum=-0.407;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:45,29:74:99:727,0,1401
12    90914    rs17353727    C    T    483.58    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=1.235;DB;DP=79;Dels=0.0;FS=2.236;HRun=0;HaplotypeScore=0.9734;MQ=43.29;MQ0=2;MQRankSum=-0.578;QD=6.12;ReadPosRankSum=0.992;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:56,22:79:99:514,0,1581
12    90953    .    C    G    35.50    MQFilter40;QDFilter2    AB=0.92;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.75;DP=100;Dels=0.0;FS=6.318;HRun=0;HaplotypeScore=0.7887;MQ=31.4;MQ0=40;MQRankSum=0.391;QD=0.35;ReadPosRankSum=-0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABC7-42389800N19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400806    GT:AD:DP:GQ:PL    0/1:92,8:100:65.49:65,0,1603
12    148286    rs4018435    A    G    32.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.67;MQ0=0;QD=10.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM138D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320165    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:64,6,0
12    148841    rs3932194    T    G    587.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.56;MQ0=0;QD=36.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM138D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320165    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:621,48,0
12    149186    rs3858702    T    C    336.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.15;MQ0=0;QD=10.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=FAM138D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320165    GT:AD:DP:GQ:PL    1/1:0,31:31:30.09:370,30,0
12    176139    rs17852242    A    T    123.11    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=0.784;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8633;MQ=51.36;MQ0=0;MQRankSum=0.454;QD=5.35;ReadPosRankSum=1.197;SNPEFF_AMINO_ACID_CHANGE=T31S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_176049_176602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    0/1:17,5:23:99:153,0,374
12    176687    rs144062648    C    G    30.24    MQFilter40    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.09;MQ0=1;MQRankSum=2.003;QD=2.52;ReadPosRankSum=-1.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    0/1:10,2:12:60.23:60,0,108
12    235022    rs12822449    C    T    131.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.92;SNPEFF_AMINO_ACID_CHANGE=P283S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_234799_235078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:164,12,0
12    247900    rs7313003    G    A    112.68    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.09;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=E154;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_247433_248520;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382841    GT:AD:DP:GQ:PL    0/1:3,5:8:27.60:143,0,28
12    248202    rs56204927    C    G    298.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=A255G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_247433_248520;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382841    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:332,27,0
12    250130    rs12321262    T    C    35.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=5.9;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    0/1:4,2:6:65.41:65,0,120
12    250578    rs2291927    C    T    92.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.286;QD=6.14;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    0/1:10,5:15:99:122,0,337
12    270805    rs3817017    C    T    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
12    271373    rs4980805    A    G    223.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:256,21,0
12    272554    rs75739218    G    A    153.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,8:8:15.03:186,15,0
12    272990    rs2270795    A    G    103.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:136,12,0
12    274572    rs11061700    G    C    1222.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,35:35:96.29:1255,96,0
12    274647    rs4980859    T    C    2370.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=29.64;SNPEFF_AMINO_ACID_CHANGE=F616;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_274600_274699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382841    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2404,184,0
12    274839    rs2291923    T    C    507.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:540,42,0
12    275065    rs2291922    A    G    571.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:605,45,0
12    277986    rs11061709    C    G    83.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
12    278376    rs2291920    C    T    75.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
12    280349    rs2291919    C    A    1327.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1360,105,0
12    283642    rs2291917    C    T    213.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382841    GT:AD:DP:GQ:PL    1/1:1,9:10:21.05:247,21,0
12    284058    rs216230    T    C    320.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=26.74;SNPEFF_AMINO_ACID_CHANGE=G1136;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_283765_286390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326261    GT:AD:DP:GQ:PL    1/1:0,11:12:27.09:354,27,0
12    301428    rs518685    G    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535498    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    301843    rs646569    A    G    920.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535498    GT:AD:DP:GQ:PL    1/1:0,29:30:72.23:953,72,0
12    302208    rs557930    A    C    42.22    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535498    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:72,0,33
12    305254    rs533572    T    C    35.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.92;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535498    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:66,0,33
12    305566    rs79352163    C    T    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538272    GT:AD:DP:GQ:PL    0/1:2,2:4:63.41:70,0,63
12    309753    rs7967868    C    T    677.34    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=58;Dels=0.0;FS=3.701;HRun=0;HaplotypeScore=0.0;MQ=59.89;MQ0=0;MQRankSum=0.951;QD=11.68;ReadPosRankSum=0.567;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535347    GT:AD:DP:GQ:PL    0/1:30,27:58:99:707,0,929
12    310113    rs4980863    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535347    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
12    319111    rs526690    T    C    1299.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.52;SNPEFF_AMINO_ACID_CHANGE=A14;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_318939_319209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359674    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1332,111,0
12    319125    rs557881    A    G    1138.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=C10R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_318939_319209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359674    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1172,87,0
12    330315    rs570680    T    G    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539668    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
12    332362    rs2289954    C    T    798.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_AMINO_ACID_CHANGE=A358;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_332298_332400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445055    GT:AD:DP:GQ:PL    1/1:0,27:27:60.20:831,60,0
12    344553    rs11610036    T    C    125.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534887    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
12    346226    rs12580917    A    C    374.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.918;DB;DP=28;Dels=0.0;FS=4.601;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.115;QD=13.39;ReadPosRankSum=0.712;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534887    GT:AD:DP:GQ:PL    0/1:14,14:28:99:405,0,446
12    346235    rs12579445    G    A    305.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.593;DB;DP=30;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.23;QD=10.17;ReadPosRankSum=-0.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534887    GT:AD:DP:GQ:PL    0/1:15,15:30:99:335,0,347
12    347068    rs2289957    T    A    472.51    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.155;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.45;MQ0=0;MQRankSum=-0.014;QD=11.25;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539260    GT:AD:DP:GQ:PL    0/1:22,20:42:99:503,0,676
12    351711    rs525797    T    G    240.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313154    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
12    405043    rs77854644    G    A    55.71    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=2.267;QD=3.09;ReadPosRankSum=-1.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261253    GT:AD:DP:GQ:PL    0/1:13,5:18:85.70:86,0,417
12    406292    rs2229351    G    A    363.53    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=27;Dels=0.0;FS=3.442;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=13.46;ReadPosRankSum=-1.334;SNPEFF_AMINO_ACID_CHANGE=S1383;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_406207_406366;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382815    GT:AD:DP:GQ:PL    0/1:13,14:27:99:394,0,408
12    416046    rs72015076    C    CT    484.46    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.344;DB;DP=63;FS=1.569;HRun=13;HaplotypeScore=387.9111;IndelType=I;MQ=56.79;MQ0=0;MQRankSum=0.024;QD=7.69;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535269    GT:AD:DP:GQ:PL    0/1:33,24:63:99:523,0,377
12    418916    rs4980877    C    T    824.30    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.971;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.32;QD=16.49;ReadPosRankSum=-1.019;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535269    GT:AD:DP:GQ:PL    0/1:24,26:50:99:854,0,863
12    422119    .    G    A    227.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.797;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.865;QD=16.28;ReadPosRankSum=-0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261253    GT:AD:DP:GQ:PL    0/1:6,8:14:99:258,0,175
12    427575    rs11062385    A    G    593.13    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.354;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8519;MQ=59.62;MQ0=0;MQRankSum=1.498;QD=9.89;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=M484T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_427272_427627;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261253    GT:AD:DP:GQ:PL    0/1:37,22:60:99:623,0,1198
12    432654    rs3213750    T    A    91.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=52.65;MQ0=0;MQRankSum=-0.365;QD=9.2;ReadPosRankSum=-1.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540168    GT:AD:DP:GQ:PL    0/1:6,4:10:99:122,0,183
12    432666    rs3213751    G    C    121.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6472;MQ=54.44;MQ0=0;MQRankSum=0.689;QD=9.33;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540168    GT:AD:DP:GQ:PL    0/1:8,5:13:99:151,0,193
12    442620    rs4980885    C    T    1079.89    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.909;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.089;QD=12.41;ReadPosRankSum=-1.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261253    GT:AD:DP:GQ:PL    0/1:46,41:87:99:1110,0,1522
12    461598    rs715230    C    A    70.23    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.03;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261253    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,145
12    464254    rs3759371    T    C    414.52    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.905;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.123;QD=19.74;ReadPosRankSum=0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261253    GT:AD:DP:GQ:PL    0/1:8,13:21:99:445,0,271
12    472033    .    A    T    216.32    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.823;QD=10.82;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535014    GT:AD:DP:GQ:PL    0/1:11,9:20:99:246,0,387
12    493443    rs10774150    A    G    30.35    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.067;QD=3.79;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261253    GT:AD:DP:GQ:PL    0/1:6,2:8:60.34:60,0,186
12    495217    rs10774152    G    T    202.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.269;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.952;QD=7.49;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261253    GT:AD:DP:GQ:PL    0/1:15,12:27:99:232,0,531
12    498267    rs72136363    CGG    C    89.95    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=41;FS=10.414;HRun=15;HaplotypeScore=396.6671;IndelType=D;MQ=37.33;MQ0=0;MQRankSum=-0.536;QD=2.19;ReadPosRankSum=1.134;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422000    GT:AD:DP:GQ:PL    0/1:31,6:41:46.01:129,0,46
12    498281    .    GGT    G    58.67    QDFilter2    AB=0.898;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DP=44;FS=29.023;HRun=0;HaplotypeScore=360.146;IndelType=D;MQ=38.48;MQ0=0;MQRankSum=-1.321;QD=1.33;ReadPosRankSum=1.809;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422000    GT:AD:DP:GQ:PL    0/1:39,5:44:97.70:98,0,623
12    537841    rs35713455    T    TA    68.98    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=15;FS=0.0;HRun=10;HaplotypeScore=40.0243;IndelType=I;MQ=61.43;MQ0=0;MQRankSum=0.919;QD=4.6;ReadPosRankSum=-1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239830    GT:AD:DP:GQ:PL    0/1:10,5:15:99:108,0,201
12    540994    rs7310504    A    G    469.60    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.866;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=20.42;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239830    GT:AD:DP:GQ:PL    0/1:9,14:23:99:500,0,293
12    550911    rs66595881    CTT    C    368.33    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=49;FS=2.403;HRun=17;HaplotypeScore=340.5612;IndelType=D;MQ=55.59;MQ0=0;MQRankSum=-0.942;QD=7.52;ReadPosRankSum=-0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540118    GT:AD:DP:GQ:PL    0/1:15,18:49:99:407,0,103
12    551295    rs4980907    C    T    86.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540118    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
12    645557    rs34868457    C    T    426.63    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.646;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7317;MQ=58.99;MQ0=0;MQRankSum=1.001;QD=18.55;ReadPosRankSum=0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    0/1:8,15:23:99:457,0,246
12    645602    rs10466910    T    C    146.62    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.95;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    0/1:1,6:7:20.72:177,0,21
12    653957    rs1008586    A    G    81.34    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.678;QD=7.39;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    0/1:7,4:11:99:111,0,243
12    653984    rs1008587    T    C    639.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:673,51,0
12    655707    rs4980937    T    C    100.92    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=16.82;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540836    GT:AD:DP:GQ:PL    0/1:1,5:6:23.53:131,0,24
12    657071    rs917667    A    G    160.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535680    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:193,18,0
12    657404    rs11063529    G    A    1356.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=R167Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_657397_657463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322843    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1390,102,0
12    658871    rs4980939    A    G    625.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9995;MQ=58.99;MQ0=0;QD=27.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535680    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:659,54,0
12    661656    rs7298766    A    G    827.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=K313R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_661633_661694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322843    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:860,66,0
12    662448    rs758790    T    C    3916.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=L356;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_662357_663149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322843    GT:AD:DP:GQ:PL    1/1:0,125:126:99:3917,319,0
12    662838    rs1056008    T    C    1216.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.02;SNPEFF_AMINO_ACID_CHANGE=P486;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_662357_663149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322843    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1250,102,0
12    663224    rs11063564    A    G    305.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:339,27,0
12    663235    rs11063565    T    C    238.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:272,24,0
12    663249    rs11063566    C    T    205.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
12    664494    rs71447498    G    A    1979.31    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=130;Dels=0.0;FS=0.656;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=15.23;ReadPosRankSum=-0.448;SNPEFF_AMINO_ACID_CHANGE=W603*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_12_664456_664596;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000322843    GT:AD:DP:GQ:PL    0/1:63,67:130:99:2009,0,1926
12    664782    rs7133404    T    C    70.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322843    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:103,9,0
12    670595    rs36078145    G    A    275.50    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.036;QD=12.52;ReadPosRankSum=-0.178;SNPEFF_AMINO_ACID_CHANGE=R992H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_670509_672675;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    0/1:12,9:22:99:305,0,307
12    675441    rs4980836    T    A    156.09    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=17;Dels=0.0;FS=6.317;HRun=2;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;MQRankSum=-1.03;QD=9.18;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    0/1:11,6:17:99:186,0,363
12    675799    rs1860614    T    C    92.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    0/1:3,4:7:99:122,0,102
12    675838    rs34909666    C    G    40.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266383    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,71
12    752327    rs6489690    C    A    75.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NINJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305108    GT:AD:DP:GQ:PL    1/1:0,4:4:9:107,9,0
12    752998    rs9669247    G    A    382.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NINJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305108    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:415,33,0
12    862989    rs3168640    T    C    744.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.39;SNPEFF_AMINO_ACID_CHANGE=C86;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_862089_863490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315939    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:778,63,0
12    863517    rs3858703    G    A    1376.45    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=1.113;DB;DP=115;Dels=0.0;FS=2.506;HRun=0;HaplotypeScore=2.6653;MQ=59.8;MQ0=0;MQRankSum=0.981;QD=11.97;ReadPosRankSum=-2.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    0/1:61,53:115:99:1406,0,1860
12    936468    rs2158502    C    G    609.46    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=2.41;DB;DP=34;Dels=0.0;FS=4.175;HRun=0;HaplotypeScore=1.6828;MQ=58.76;MQ0=0;MQRankSum=1.063;QD=17.93;ReadPosRankSum=-0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    0/1:13,21:34:99:639,0,434
12    939302    rs10774466    A    G    362.99    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=23;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;MQRankSum=1.085;QD=15.78;ReadPosRankSum=1.147;SNPEFF_AMINO_ACID_CHANGE=A429;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_939169_939326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315939    GT:AD:DP:GQ:PL    0/1:10,13:23:99:393,0,296
12    970093    rs11286613    CT    C    458.93    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.188;DB;DP=67;FS=0.0;HRun=12;HaplotypeScore=511.5911;IndelType=D;MQ=49.88;MQ0=0;MQRankSum=1.974;QD=6.85;ReadPosRankSum=2.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538787    GT:AD:DP:GQ:PL    0/1:34,32:67:99:498,0,563
12    970115    rs147270011    T    G    61.95    HaplotypeScoreFilter13;QDFilter2    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.27;DB;DP=109;Dels=0.0;FS=2.434;HRun=6;HaplotypeScore=20.5586;MQ=53.06;MQ0=0;MQRankSum=-3.944;QD=0.57;ReadPosRankSum=5.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538787    GT:AD:DP:GQ:PL    0/1:51,55:109:91.94:92,0,914
12    971291    rs2286007    C    T    1030.12    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.266;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=2.001;QD=18.73;ReadPosRankSum=-0.65;SNPEFF_AMINO_ACID_CHANGE=T112I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_971249_971436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    0/1:21,34:55:99:1060,0,732
12    987482    rs1012729    G    A    983.04    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.375;DB;DP=57;Dels=0.0;FS=20.936;HRun=1;HaplotypeScore=0.0;MQ=58.15;MQ0=0;MQRankSum=0.487;QD=17.25;ReadPosRankSum=-0.612;SNPEFF_AMINO_ACID_CHANGE=Q1189;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_987378_987527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537687    GT:AD:DP:GQ:PL    0/1:20,37:57:99:1013,0,587
12    987533    rs112284021    C    CT    96.54    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=35;FS=0.0;HRun=15;HaplotypeScore=243.8046;IndelType=I;MQ=56.44;MQ0=0;MQRankSum=-0.722;QD=2.76;ReadPosRankSum=-1.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    0/1:26,8:35:84.35:136,0,84
12    989800    rs67321273    CT    C    778.12    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.498;DB;DP=234;FS=5.218;HRun=14;HaplotypeScore=1460.9755;IndelType=D;MQ=55.67;MQ0=0;MQRankSum=4.362;QD=3.31;ReadPosRankSum=2.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    0/1:137,82:234:99:817,0,2179
12    990912    rs956868    A    C    3407.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;DB;DP=100;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;MQRankSum=-1.347;QD=34.08;ReadPosRankSum=0.647;SNPEFF_AMINO_ACID_CHANGE=T1056P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_990858_990955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315939    GT:AD:DP:GQ:PL    1/1:1,99:100:99:3408,227,0
12    991009    rs7953912    C    T    839.19    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=5.621;DB;DP=54;Dels=0.0;FS=3.322;HRun=0;HaplotypeScore=2.2772;MQ=59.57;MQ0=0;MQRankSum=1.185;QD=15.54;ReadPosRankSum=1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535698    GT:AD:DP:GQ:PL    0/1:29,25:54:99:869,0,746
12    991361    rs6489762    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535698    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    993652    rs10849576    T    G    65.89    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.47;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535698    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:96,0,29
12    993930    rs7300444    C    T    1211.29    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.621;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.39;MQ0=0;MQRankSum=-0.322;QD=15.94;ReadPosRankSum=-1.684;SNPEFF_AMINO_ACID_CHANGE=N1073;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_993815_995250;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535572    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1241,0,1149
12    994487    rs7955371    G    C    6712.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8268;MQ=59.64;MQ0=0;QD=37.71;SNPEFF_AMINO_ACID_CHANGE=C1099S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_993815_995250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340908    GT:AD:DP:GQ:PL    1/1:0,178:178:99:6713,497,0
12    995291    rs79413358    G    GT    789.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=8;HaplotypeScore=67.7511;IndelType=I;MQ=60.8;MQ0=0;QD=29.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534872    GT:AD:DP:GQ:PL    1/1:3,24:27:72.21:831,72,0
12    996205    rs12298816    A    T    132.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534872    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
12    996671    rs11064584    G    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534872    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
12    998365    rs12828016    G    T    819.07    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.156;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.235;QD=10.37;ReadPosRankSum=-0.408;SNPEFF_AMINO_ACID_CHANGE=M1401I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_998306_998389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340908    GT:AD:DP:GQ:PL    0/1:47,32:79:99:849,0,1481
12    999762    rs2255390    A    G    267.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=22.27;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    0/1:4,8:12:99:297,0,109
12    1003837    rs2301880    C    T    546.78    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.2592;MQ=59.38;MQ0=0;MQRankSum=0.285;QD=14.78;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    0/1:18,19:37:99:577,0,536
12    1005095    rs2269937    A    G    51.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=5.75;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    0/1:6,3:9:81.71:82,0,212
12    1016881    rs56387274    C    CT    832.35    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.394;DB;DP=50;FS=0.0;HRun=1;HaplotypeScore=149.1861;IndelType=I;MQ=60.19;MQ0=0;MQRankSum=-0.103;QD=16.65;ReadPosRankSum=1.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228345    GT:AD:DP:GQ:PL    0/1:27,23:50:99:871,0,812
12    1017197    rs4766334    C    T    1457.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_AMINO_ACID_CHANGE=Y1449;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_1017013_1017200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252477    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1490,111,0
12    1022452    rs1051669    C    T    605.87    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.41;DB;DP=45;Dels=0.0;FS=2.227;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-1.504;QD=13.46;ReadPosRankSum=-1.081;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461568    GT:AD:DP:GQ:PL    0/1:23,22:45:99:636,0,819
12    1022679    rs6413436    A    G    918.48    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.464;DB;DP=51;Dels=0.0;FS=3.055;HRun=0;HaplotypeScore=0.9998;MQ=59.55;MQ0=0;MQRankSum=0.691;QD=18.01;ReadPosRankSum=-0.539;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461568    GT:AD:DP:GQ:PL    0/1:23,28:51:99:948,0,804
12    1025332    rs4765816    C    T    218.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536177    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:251,21,0
12    1036626    rs7972168    C    T    150.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397230    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:183,15,0
12    1038742    rs4766377    A    G    559.96    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.369;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.204;QD=14.0;ReadPosRankSum=-0.938;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397230    GT:AD:DP:GQ:PL    0/1:18,22:40:99:590,0,631
12    1040219    rs11571409    G    A    79.17    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.79;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:109,0,25
12    1040373    rs7303748    T    C    609.52    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.236;DB;DP=37;Dels=0.0;FS=3.259;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.824;QD=16.47;ReadPosRankSum=-0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:18,19:37:99:640,0,592
12    1041951    rs11571403    C    G    102.90    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.88;MQ0=0;MQRankSum=-1.914;QD=2.19;ReadPosRankSum=0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:34,13:47:99:133,0,1126
12    1041953    rs11571402    C    T    93.95    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.173;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.88;MQ0=0;MQRankSum=-1.486;QD=2.0;ReadPosRankSum=0.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:34,13:47:99:124,0,1130
12    1041979    .    T    C    184    SnpCluster    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DP=49;Dels=0.0;FS=6.398;HRun=1;HaplotypeScore=2.8633;MQ=41.74;MQ0=0;MQRankSum=-3.729;QD=3.76;ReadPosRankSum=0.687;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:38,11:49:99:214,0,986
12    1041981    .    A    C    187    SnpCluster    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=1.998;DP=48;Dels=0.0;FS=6.307;HRun=1;HaplotypeScore=2.8633;MQ=41.27;MQ0=0;MQRankSum=-2.199;QD=3.9;ReadPosRankSum=0.641;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:37,11:48:99:217,0,961
12    1041983    .    A    G    174.51    SnpCluster    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.731;DP=48;Dels=0.0;FS=6.307;HRun=0;HaplotypeScore=2.8633;MQ=41.27;MQ0=0;MQRankSum=-2.123;QD=3.64;ReadPosRankSum=1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:37,11:48:99:205,0,949
12    1041986    .    C    G    182.21    SnpCluster    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.664;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8633;MQ=41.27;MQ0=0;MQRankSum=-2.82;QD=3.8;ReadPosRankSum=2.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:37,10:48:99:212,0,963
12    1041996    rs113084521    A    C    265.70    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=4.818;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8633;MQ=41.38;MQ0=0;MQRankSum=-1.278;QD=3.5;ReadPosRankSum=-4.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:36,40:76:99:296,0,903
12    1042021    rs10774471    C    T    471.60    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.5455;MQ=48.92;MQ0=0;MQRankSum=-2.855;QD=4.21;ReadPosRankSum=-4.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:84,27:112:99:502,0,2289
12    1042261    rs56170870    GA    G    938.59    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=6.302;DB;DP=101;FS=2.952;HRun=10;HaplotypeScore=262.6545;IndelType=D;MQ=58.81;MQ0=0;MQRankSum=-0.158;QD=9.29;ReadPosRankSum=0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358495    GT:AD:DP:GQ:PL    0/1:54,47:101:99:978,0,885
12    1192867    rs10734995    C    T    374    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:407,33,0
12    1219286    rs7131703    T    C    178.16    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.2;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    0/1:5,6:11:99:208,0,172
12    1221221    rs74679668    T    TAG    1365.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=77.433;IndelType=I;MQ=59.95;MQ0=0;QD=48.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    1/1:1,26:27:78.27:1408,78,0
12    1224972    rs7973392    A    C    179.63    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=13.82;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    0/1:7,6:13:99:210,0,248
12    1224980    rs61912159    G    A    168.74    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=12.98;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    0/1:7,6:13:99:199,0,255
12    1292399    rs111929784    CTA    C    844.56    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.833;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=125.9094;IndelType=D;MQ=60.56;MQ0=0;MQRankSum=0.471;QD=23.46;ReadPosRankSum=1.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    0/1:14,22:36:99:884,0,591
12    1313732    rs7977526    T    C    212.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.225;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.965;QD=15.21;ReadPosRankSum=-1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    0/1:6,8:14:99:243,0,174
12    1345827    rs2286037    C    T    318.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:351,27,0
12    1372114    rs2286031    A    G    208.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299183    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
12    1741616    rs4766401    T    C    116.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538854    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
12    1748834    rs2270036    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=12.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310594    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:80,6,0
12    1863728    rs11061971    A    T    397.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.41;DB;DP=26;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.9987;MQ=59.11;MQ0=0;MQRankSum=-0.41;QD=15.29;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADIPOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357103    GT:AD:DP:GQ:PL    0/1:13,13:26:99:427,0,464
12    1889823    rs767870    G    A    3550.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=36.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADIPOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535774    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3550,259,0
12    1895373    rs758169    T    G    163.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.35;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADIPOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357103    GT:AD:DP:GQ:PL    1/1:0,10:10:15.05:196,15,0
12    1902766    rs2058111    T    G    155.22    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.398;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=-0.133;QD=5.75;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADIPOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357103    GT:AD:DP:GQ:PL    0/1:19,8:27:99:185,0,613
12    1902905    rs33912216    G    A    418.55    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=37;Dels=0.0;FS=12.767;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-1.383;QD=11.31;ReadPosRankSum=0.017;SNPEFF_AMINO_ACID_CHANGE=G1046;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_1901123_1902925;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456077    GT:AD:DP:GQ:PL    0/1:21,16:37:99:449,0,549
12    1904726    rs3217027    G    GAC    533.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=30.6945;IndelType=I;MQ=62.45;MQ0=0;QD=41.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537923    GT:AD:DP:GQ:PL    1/1:2,11:13:33.11:576,33,0
12    1909979    rs2286378    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    1919543    rs2286377    C    T    180.65    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.267;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.398;QD=8.21;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    0/1:14,8:22:99:211,0,425
12    1950011    rs58188909    A    AC    2323.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=1;HaplotypeScore=114.4592;IndelType=I;MQ=61.26;MQ0=0;QD=45.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539048    GT:AD:DP:GQ:PL    1/1:0,51:51:99:2366,151,0
12    1955664    rs7137553    G    T    342.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:376,27,0
12    1955668    rs7138458    C    A    397.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:430,33,0
12    1955890    rs7137876    T    C    511.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:545,45,0
12    1962992    rs2041141    A    G    187.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:220,18,0
12    1967526    rs917367    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    1967947    rs2286369    C    G    222.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:256,21,0
12    1969262    rs10848582    T    C    755.73    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.335;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.719;QD=16.79;ReadPosRankSum=-0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    0/1:20,24:45:99:786,0,589
12    1993337    rs2429184    T    C    585.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:618,48,0
12    1995042    rs10774003    A    G    195.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9916;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=10.86;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    0/1:8,10:18:99:225,0,291
12    1995403    rs10735005    T    C    5508.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.64;SNPEFF_AMINO_ACID_CHANGE=I263V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_1995389_1995539;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456077    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5508,418,0
12    1995622    rs2906892    G    C    807.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,22:22:66.20:840,66,0
12    1995699    rs2906893    T    C    156.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=58.97;MQ0=0;MQRankSum=1.001;QD=17.33;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    0/1:3,6:9:96.55:186,0,97
12    2016550    rs112521420    A    ATTGTC    4008.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=168.9995;IndelType=I;MQ=50.91;MQ0=0;QD=83.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:8,37:48:99:4008,132,0
12    2016811    rs146752695    CCTGGTGGGCGTGT    C    698.02    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=245.9063;IndelType=D;MQ=55.0;MQ0=0;MQRankSum=-2.435;QD=30.35;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    0/1:16,7:23:99:737,0,1285
12    2019322    rs8181786    G    A    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
12    2022411    rs1558142    T    C    821.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,31:31:75.17:854,75,0
12    2022501    rs2429163    A    G    206.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA2D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280663    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
12    2055266    rs7222    T    C    101.90    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.38;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397173    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:132,0,25
12    2058245    rs2240612    T    C    114.86    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=19;Dels=0.0;FS=2.029;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.181;QD=6.05;ReadPosRankSum=0.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536665    GT:AD:DP:GQ:PL    0/1:12,7:19:99:145,0,400
12    2062323    .    T    TTGC    833.14    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.078;DP=43;FS=6.273;HRun=0;HaplotypeScore=156.6508;IndelType=I;MQ=60.75;MQ0=0;MQRankSum=0.819;QD=19.38;ReadPosRankSum=0.199;SNPEFF_AMINO_ACID_CHANGE=Q135RK;SNPEFF_CODON_CHANGE=caa/cGCAaa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_12_2061582_2062454;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540622    GT:AD:DP:GQ:PL    0/1:27,15:43:99:872,0,407
12    2077897    rs2470425    G    C    205.33    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=20;Dels=0.0;FS=1.829;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=10.27;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280665    GT:AD:DP:GQ:PL    0/1:9,11:20:99:235,0,316
12    2102623    rs12813534    A    G    313.30    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.961;QD=13.05;ReadPosRankSum=-0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543114    GT:AD:DP:GQ:PL    0/1:14,10:24:99:343,0,464
12    2107036    rs2302098    T    C    196.11    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=10.89;ReadPosRankSum=-1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543114    GT:AD:DP:GQ:PL    0/1:10,8:18:99:226,0,329
12    2113348    rs7298333    A    C    160.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543114    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
12    2622254    rs143490559    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:84,6,0
12    2656887    rs10848674    T    G    126.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    2659848    rs10848675    T    C    1477.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1510,114,0
12    2666348    rs2370596    A    G    216.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
12    2676683    rs2370602    C    T    587.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491104    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:621,45,0
12    2690702    rs11832738    G    A    635.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    1/1:1,21:22:48.16:669,48,0
12    2694638    rs215976    C    T    167.27    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=11.95;ReadPosRankSum=-0.38;SNPEFF_AMINO_ACID_CHANGE=D653;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2694542_2694662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:5,8:14:99:197,0,103
12    2705356    rs215981    A    G    68.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.4;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:3,3:6:98.41:98,0,105
12    2706720    rs215983    G    C    1968.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465278    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2002,156,0
12    2715958    rs215992    T    C    134.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.89;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:4,5:9:99:164,0,127
12    2716018    rs123263    C    T    150.79    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=11.6;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:7,6:13:99:181,0,243
12    2720988    rs216007    T    C    346.23    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=0.422;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.153;QD=10.49;ReadPosRankSum=-0.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496818    GT:AD:DP:GQ:PL    0/1:20,13:33:99:376,0,622
12    2721137    rs216008    C    T    1386.74    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=110;Dels=0.0;FS=1.539;HRun=2;HaplotypeScore=0.7887;MQ=59.83;MQ0=0;MQRankSum=-0.283;QD=12.61;ReadPosRankSum=-0.498;SNPEFF_AMINO_ACID_CHANGE=F1103;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2721069_2721179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:54,56:110:99:1417,0,1527
12    2757756    rs2239127    T    C    381.64    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.086;DB;DP=35;Dels=0.0;FS=3.135;HRun=3;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.259;QD=10.9;ReadPosRankSum=-0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:19,16:35:99:412,0,555
12    2757769    rs2239128    T    C    283.41    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.989;DB;DP=33;Dels=0.0;FS=3.119;HRun=3;HaplotypeScore=2.914;MQ=58.59;MQ0=0;MQRankSum=-2.163;QD=8.59;ReadPosRankSum=-0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:18,15:33:99:313,0,526
12    2757782    rs2239129    C    T    272.12    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7461;MQ=59.14;MQ0=0;MQRankSum=0.915;QD=10.08;ReadPosRankSum=-0.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:17,10:27:99:302,0,444
12    2760708    rs216045    G    A    973.30    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=5.128;DB;DP=67;Dels=0.0;FS=1.215;HRun=0;HaplotypeScore=2.5712;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=14.53;ReadPosRankSum=0.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1003,0,831
12    2760965    rs72040885    GA    G    1126.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=2;HaplotypeScore=97.8904;IndelType=D;MQ=59.74;MQ0=0;QD=37.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483136    GT:AD:DP:GQ:PL    1/1:0,30:30:90.29:1169,90,0
12    2774601    rs2302727    C    A    312.14    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.505;DB;DP=25;Dels=0.0;FS=3.388;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.068;QD=12.49;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:14,11:25:99:342,0,429
12    2778272    rs3834937    G    GC    344.99    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.766;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=32.5336;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=21.56;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:6,10:16:99:384,0,175
12    2786115    rs12818148    C    G    341.29    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.957;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=58.84;MQ0=0;MQRankSum=0.0;QD=17.06;ReadPosRankSum=-1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:5,14:20:99:371,0,165
12    2787058    rs2302731    C    T    196.22    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.543;QD=10.33;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465934    GT:AD:DP:GQ:PL    0/1:11,8:19:99:226,0,335
12    2789787    rs12299577    A    G    106.83    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=17.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465934    GT:AD:DP:GQ:PL    0/1:1,5:6:25.60:137,0,26
12    2789789    rs12319450    C    G    109.88    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=18.31;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465934    GT:AD:DP:GQ:PL    0/1:1,5:6:12.62:140,0,13
12    2791130    rs10848683    C    T    983.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.985;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=59.54;MQ0=0;MQRankSum=-1.676;QD=10.93;ReadPosRankSum=1.592;SNPEFF_AMINO_ACID_CHANGE=P1820L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2791116_2791220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327702    GT:AD:DP:GQ:PL    0/1:54,36:90:99:1014,0,1647
12    2791132    rs10774053    A    G    973.88    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.717;DB;DP=91;Dels=0.0;FS=1.86;HRun=1;HaplotypeScore=1.6498;MQ=59.54;MQ0=0;MQRankSum=-1.042;QD=10.7;ReadPosRankSum=1.701;SNPEFF_AMINO_ACID_CHANGE=M1821V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2791116_2791220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327702    GT:AD:DP:GQ:PL    0/1:55,36:91:99:1004,0,1623
12    2791205    rs10774054    A    G    2719.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7306;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_AMINO_ACID_CHANGE=K1845R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2791116_2791220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327702    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2753,208,0
12    2795255    rs2270373    C    T    431.07    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=33;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=1.1567;MQ=56.97;MQ0=0;MQRankSum=0.342;QD=13.06;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322367    GT:AD:DP:GQ:PL    0/1:16,17:33:99:461,0,521
12    2851166    rs55941820    T    C    119.63    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.866;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3782;MQ=49.04;MQ0=2;MQRankSum=0.206;QD=5.44;ReadPosRankSum=-1.691;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-885B4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540093    GT:AD:DP:GQ:PL    0/1:14,8:22:99:150,0,482
12    2851185    rs12319038    A    G    561.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=44.92;MQ0=3;QD=25.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-885B4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540093    GT:AD:DP:GQ:PL    1/1:0,22:22:45.14:594,45,0
12    2851259    rs12319097    A    G    484.71    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.175;DB;DP=49;Dels=0.0;FS=2.837;HRun=0;HaplotypeScore=0.0;MQ=41.78;MQ0=4;MQRankSum=-2.685;QD=9.89;ReadPosRankSum=1.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-885B4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540093    GT:AD:DP:GQ:PL    0/1:23,26:49:99:515,0,705
12    2851357    rs10774059    C    T    723.75    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.144;DB;DP=55;Dels=0.0;FS=4.307;HRun=0;HaplotypeScore=2.3574;MQ=41.62;MQ0=4;MQRankSum=0.667;QD=13.16;ReadPosRankSum=1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-885B4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540093    GT:AD:DP:GQ:PL    0/1:22,32:55:99:754,0,453
12    2851365    rs4765989    T    C    1373.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4008;MQ=40.28;MQ0=2;MQRankSum=-0.318;QD=26.93;ReadPosRankSum=1.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-885B4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540093    GT:AD:DP:GQ:PL    1/1:1,50:51:99:1406,117,0
12    2908330    rs56196860    C    A    561.34    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.057;DB;DP=46;Dels=0.0;FS=11.612;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.26;QD=12.2;ReadPosRankSum=0.329;SNPEFF_AMINO_ACID_CHANGE=N197K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2908254_2908410;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000001008    GT:AD:DP:GQ:PL    0/1:24,22:46:99:591,0,755
12    2966098    rs7309114    G    A    74.21    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.285;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=4.95;ReadPosRankSum=-0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342628    GT:AD:DP:GQ:PL    0/1:11,4:15:99:104,0,322
12    2968169    rs3742076    A    G    373.57    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.463;DB;DP=38;Dels=0.0;FS=3.01;HRun=3;HaplotypeScore=1.5592;MQ=58.85;MQ0=0;MQRankSum=1.015;QD=9.83;ReadPosRankSum=-0.179;SNPEFF_AMINO_ACID_CHANGE=S628P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2966849_2968829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOXM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361953    GT:AD:DP:GQ:PL    0/1:23,15:38:99:404,0,718
12    2968458    rs2215292    T    C    1197.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_AMINO_ACID_CHANGE=R531;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2966849_2968829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOXM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361953    GT:AD:DP:GQ:PL    1/1:0,40:40:96.31:1231,96,0
12    2977954    rs28990703    A    G    628.21    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.493;QD=16.11;ReadPosRankSum=-0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FOXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342628    GT:AD:DP:GQ:PL    0/1:18,21:39:99:658,0,526
12    2997397    rs2907608    G    A    1417.16    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=82;Dels=0.0;FS=0.85;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.253;QD=17.28;ReadPosRankSum=0.609;SNPEFF_AMINO_ACID_CHANGE=S149;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_2997077_2998437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000461997    GT:AD:DP:GQ:PL    0/1:35,47:82:99:1447,0,1036
12    3016921    rs10848732    G    C    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
12    3017102    rs11062412    G    A    273.23    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.418;DB;DP=25;Dels=0.0;FS=2.007;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=10.93;ReadPosRankSum=-0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    0/1:14,11:25:99:303,0,357
12    3017219    rs10848733    A    G    1300.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.93;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1334,102,0
12    3018675    rs11305670    AT    A    1041.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.509;DB;DP=67;FS=0.0;HRun=14;HaplotypeScore=245.56;IndelType=D;MQ=57.61;MQ0=0;MQRankSum=1.832;QD=15.32;ReadPosRankSum=0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    1/1:8,59:67:99:1084,107,0
12    3018802    rs35490316    G    C    1424.86    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.359;DB;DP=80;Dels=0.0;FS=2.481;HRun=0;HaplotypeScore=1.4105;MQ=58.6;MQ0=0;MQRankSum=-0.136;QD=17.81;ReadPosRankSum=0.999;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    0/1:35,45:80:99:1455,0,1094
12    3029669    rs2240799    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    3031358    rs2302283    T    C    1106.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    1/1:0,30:30:84.25:1139,84,0
12    3039319    rs10848747    A    G    162.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
12    3040029    rs10848749    C    T    239.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:272,21,0
12    3046802    rs33973716    A    G    303.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.486;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.546;QD=18.99;ReadPosRankSum=-0.667;SNPEFF_AMINO_ACID_CHANGE=T310;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_3046797_3046895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228245    GT:AD:DP:GQ:PL    0/1:4,12:16:99:334,0,117
12    3047466    rs2074987    G    A    931.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TULP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535226    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:965,78,0
12    3120450    rs2109203    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358409    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    3127652    rs2159411    A    G    700.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=26.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358409    GT:AD:DP:GQ:PL    1/1:0,25:26:63.15:734,63,0
12    3128103    rs71534246    G    A    162.80    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.28;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543035    GT:AD:DP:GQ:PL    0/1:4,6:10:99:193,0,131
12    3128416    rs67719910    C    T    247.57    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.67;QD=19.04;ReadPosRankSum=-1.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543035    GT:AD:DP:GQ:PL    0/1:5,8:13:99:278,0,102
12    3130938    rs4759380    A    G    347.60    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.243;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.246;QD=13.37;ReadPosRankSum=0.903;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443986    GT:AD:DP:GQ:PL    0/1:11,15:26:99:378,0,376
12    3131206    rs3741952    T    C    747.29    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=64;Dels=0.0;FS=7.317;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.924;QD=11.68;ReadPosRankSum=-0.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443986    GT:AD:DP:GQ:PL    0/1:36,28:64:99:777,0,1192
12    3131238    rs4759379    A    G    415.57    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.259;DB;DP=43;Dels=0.0;FS=1.949;HRun=1;HaplotypeScore=1.6617;MQ=59.46;MQ0=0;MQRankSum=-0.795;QD=9.66;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443986    GT:AD:DP:GQ:PL    0/1:24,19:43:99:446,0,821
12    3131370    rs10848763    T    C    39.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443986    GT:AD:DP:GQ:PL    0/1:1,3:4:27.10:70,0,27
12    3147080    rs3741951    C    T    424.39    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.921;QD=18.45;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358409    GT:AD:DP:GQ:PL    0/1:9,14:23:99:454,0,255
12    3147462    rs1990330    A    C    110.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.36;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358409    GT:AD:DP:GQ:PL    0/1:2,4:6:57.53:140,0,58
12    3149483    rs7294804    A    G    615.50    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.73;DB;DP=40;Dels=0.0;FS=1.324;HRun=0;HaplotypeScore=0.734;MQ=59.42;MQ0=0;MQRankSum=-0.016;QD=15.39;ReadPosRankSum=0.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358409    GT:AD:DP:GQ:PL    0/1:18,22:40:99:645,0,439
12    3310335    rs740777    C    T    561.83    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.572;DB;DP=45;Dels=0.0;FS=5.02;HRun=2;HaplotypeScore=0.9992;MQ=59.49;MQ0=0;MQRankSum=-1.269;QD=12.49;ReadPosRankSum=-0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    0/1:24,21:45:99:592,0,652
12    3310565    rs71577821    C    A    221.99    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.172;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.22;QD=13.06;ReadPosRankSum=-1.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    0/1:7,10:17:99:252,0,124
12    3320758    rs66713674    CT    C    42.64    QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=25;FS=0.0;HRun=16;HaplotypeScore=180.9404;IndelType=D;MQ=42.27;MQ0=0;MQRankSum=-1.088;QD=1.52;ReadPosRankSum=0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    0/1:22,6:25:39.30:82,0,39
12    3320774    rs78813751    T    A    401.91    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.486;DB;DP=35;Dels=0.0;FS=7.597;HRun=1;HaplotypeScore=1.9994;MQ=38.58;MQ0=3;MQRankSum=-1.733;QD=11.48;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    1/1:4,31:35:8.14:434,8,0
12    3321090    rs61907326    G    A    385.63    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=48;Dels=0.0;FS=1.818;HRun=0;HaplotypeScore=0.0;MQ=44.63;MQ0=4;MQRankSum=-2.037;QD=8.03;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    0/1:30,18:48:99:416,0,884
12    3321102    rs141480177    C    T    759.22    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=4.152;DB;DP=38;Dels=0.0;FS=2.309;HRun=1;HaplotypeScore=0.9996;MQ=47.64;MQ0=1;MQRankSum=2.211;QD=19.98;ReadPosRankSum=0.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    0/1:14,24:38:99:789,0,315
12    3321109    rs17779041    A    G    1156.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.08;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    1/1:0,32:32:93.24:1189,93,0
12    3321163    rs61907327    A    C    208.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.24;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
12    3321200    rs9669143    T    C    111.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
12    3321265    rs9669456    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.02;MQ0=0;QD=16.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
12    3387521    rs651196    C    G    400.91    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.626;DB;DP=27;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=1.8808;MQ=59.14;MQ0=0;MQRankSum=-0.073;QD=14.85;ReadPosRankSum=0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    0/1:13,14:27:99:431,0,417
12    3387555    rs651243    C    T    736.45    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=53;Dels=0.0;FS=1.358;HRun=0;HaplotypeScore=2.5314;MQ=59.13;MQ0=0;MQRankSum=0.179;QD=13.9;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    0/1:24,28:53:99:766,0,780
12    3387697    rs16930370    T    C    578.19    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=52;Dels=0.0;FS=4.523;HRun=0;HaplotypeScore=0.9159;MQ=59.13;MQ0=0;MQRankSum=0.387;QD=10.91;ReadPosRankSum=-0.018;SNPEFF_AMINO_ACID_CHANGE=I58;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_3387587_3387778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    0/1:29,23:52:99:608,0,1026
12    3388004    rs544668    T    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011898    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    3390803    rs79997404    G    A    135.08    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.386;QD=10.39;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431374    GT:AD:DP:GQ:PL    0/1:4,9:13:99:165,0,125
12    3390804    rs605613    C    T    145.38    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.62;QD=11.18;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431374    GT:AD:DP:GQ:PL    0/1:4,9:13:99:175,0,123
12    3390867    rs71577846    T    C    380.73    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.255;DB;DP=25;Dels=0.0;FS=3.965;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.594;QD=15.23;ReadPosRankSum=-0.481;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431374    GT:AD:DP:GQ:PL    0/1:9,16:25:99:411,0,290
12    3390881    .    C    T    391.78    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DP=26;Dels=0.0;FS=3.687;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-2.232;QD=15.07;ReadPosRankSum=-0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431374    GT:AD:DP:GQ:PL    0/1:11,15:26:99:422,0,374
12    3392351    rs632887    A    G    53.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.93;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407263    GT:AD:DP:GQ:PL    0/1:6,3:9:83.37:83,0,186
12    3600967    rs757609    T    C    80.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=16.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382622    GT:AD:DP:GQ:PL    1/1:0,4:5:9.03:113,9,0
12    3650156    rs10744619    T    C    75.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382622    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
12    3663150    rs17769699    C    G    40.30    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=8.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382622    GT:AD:DP:GQ:PL    0/1:1,4:5:33.62:70,0,34
12    3701464    rs34000611    G    A    2005.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.928;DB;DP=142;DS;Dels=0.0;FS=9.259;HRun=1;HaplotypeScore=2.5447;MQ=59.84;MQ0=0;MQRankSum=1.978;QD=14.12;ReadPosRankSum=1.986;SNPEFF_AMINO_ACID_CHANGE=R340;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_3701397_3701518;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452611    GT:AD:DP:GQ:PL    0/1:71,71:142:99:2035,0,2307
12    3702425    rs146228449    G    C    107.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.46;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452611    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,139
12    3728689    rs10437826    G    T    499.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440314    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:532,42,0
12    3736734    rs10848893    C    T    617.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.09;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.95;QD=11.88;ReadPosRankSum=0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440314    GT:AD:DP:GQ:PL    0/1:26,26:52:99:648,0,698
12    3736745    rs10848894    T    C    1118    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=26.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440314    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1151,99,0
12    3736940    rs17836183    C    T    34.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.91;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440314    GT:AD:DP:GQ:PL    0/1:4,3:7:64.35:64,0,148
12    3757388    rs11062752    G    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440314    GT:AD:DP:GQ:PL    0/1:2,2:4:71.95:72,0,72
12    3757424    rs877554    A    T    64.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.8;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440314    GT:AD:DP:GQ:PL    0/1:3,3:6:94.82:95,0,107
12    3757548    rs887304    T    C    382.19    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.643;DB;DP=27;Dels=0.0;FS=4.809;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=14.16;ReadPosRankSum=0.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440314    GT:AD:DP:GQ:PL    0/1:12,14:27:99:412,0,404
12    3768705    rs10848906    C    A    344.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.152;DB;DP=22;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.263;QD=15.64;ReadPosRankSum=-0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252322    GT:AD:DP:GQ:PL    0/1:11,11:22:99:374,0,357
12    3787956    rs242019    A    C    394.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252322    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:428,33,0
12    3789551    rs77876516    C    CA    191.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=14;FS=3.358;HRun=1;HaplotypeScore=31.9695;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=0.101;QD=13.69;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EFCAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252322    GT:AD:DP:GQ:PL    0/1:8,6:14:99:231,0,234
12    3950158    rs114940764    C    T    991.43    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=65;Dels=0.0;FS=5.952;HRun=0;HaplotypeScore=2.7831;MQ=57.99;MQ0=0;MQRankSum=1.352;QD=15.25;ReadPosRankSum=-1.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PARP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228820    GT:AD:DP:GQ:PL    0/1:31,34:65:99:1021,0,957
12    3950182    rs2072386    G    T    700.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.434;DB;DP=56;Dels=0.0;FS=2.354;HRun=1;HaplotypeScore=0.9832;MQ=56.5;MQ0=0;MQRankSum=0.401;QD=12.51;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PARP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228820    GT:AD:DP:GQ:PL    0/1:28,28:56:99:731,0,962
12    3950184    rs2072387    C    T    708.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.675;DB;DP=58;Dels=0.0;FS=2.277;HRun=1;HaplotypeScore=0.9832;MQ=56.28;MQ0=0;MQRankSum=1.477;QD=12.22;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PARP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228820    GT:AD:DP:GQ:PL    0/1:29,29:58:99:739,0,883
12    3950977    rs7295047    T    C    482.82    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=-0.629;QD=12.71;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PARP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228820    GT:AD:DP:GQ:PL    0/1:20,18:38:99:513,0,654
12    4383158    rs3217786    T    C    146.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536795    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:180,15,0
12    4388084    rs3217805    C    G    246.02    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.417;QD=10.25;ReadPosRankSum=0.537;SNPEFF_AMINO_ACID_CHANGE=T190;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4387926_4388085;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCND2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261254    GT:AD:DP:GQ:PL    0/1:15,9:24:99:276,0,490
12    4430547    rs10774222    C    T    805.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=32.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179259    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:839,69,0
12    4430561    rs11063080    C    G    367.43    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.579;QD=15.31;ReadPosRankSum=0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179259    GT:AD:DP:GQ:PL    0/1:11,13:24:99:397,0,347
12    4433639    rs4414304    T    C    450.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179259    GT:AD:DP:GQ:PL    1/1:0,19:19:39.10:483,39,0
12    4446037    rs4765778    A    C    163.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179259    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
12    4446116    rs7296163    T    C    570.84    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.301;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.167;QD=24.82;ReadPosRankSum=-1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179259    GT:AD:DP:GQ:PL    0/1:7,16:23:99:601,0,217
12    4460643    rs76112210    C    A    93.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=11.75;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000179259    GT:AD:DP:GQ:PL    0/1:4,4:8:99:124,0,141
12    4461485    rs7133330    G    A    596.35    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.856;DB;DP=41;Dels=0.0;FS=4.945;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.928;QD=14.55;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=A147;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4461426_4462338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000179259    GT:AD:DP:GQ:PL    0/1:22,19:41:99:626,0,534
12    4553184    rs2241281    C    T    50.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FGF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228837    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
12    4553332    rs2241280    A    G    528.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=27.82;SNPEFF_AMINO_ACID_CHANGE=V139;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4553299_4553402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FGF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228837    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:562,45,0
12    4553383    rs2241279    A    G    678.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=27.13;SNPEFF_AMINO_ACID_CHANGE=T122;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4553299_4553402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FGF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228837    GT:AD:DP:GQ:PL    1/1:0,25:25:54.15:711,54,0
12    4554548    rs7358740    G    C    1801.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=59.71;MQ0=0;QD=27.71;SNPEFF_AMINO_ACID_CHANGE=A63;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4554391_4554780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FGF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228837    GT:AD:DP:GQ:PL    1/1:0,64:65:99:1834,153,0
12    4643207    rs147612633    T    A    305.67    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.377;QD=16.98;ReadPosRankSum=-0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535030    GT:AD:DP:GQ:PL    0/1:8,10:18:99:336,0,280
12    4662210    rs17850028    T    C    696.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.431;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.657;QD=19.91;ReadPosRankSum=0.051;SNPEFF_AMINO_ACID_CHANGE=S206;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4662149_4662313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD51AP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352618    GT:AD:DP:GQ:PL    0/1:14,21:35:99:727,0,436
12    4700221    rs2302248    G    T    126.12    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=17;Dels=0.0;FS=3.854;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=7.42;ReadPosRankSum=-1.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537719    GT:AD:DP:GQ:PL    0/1:10,7:17:99:156,0,355
12    4705317    rs3741925    C    T    971.94    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.16;DB;DP=87;Dels=0.0;FS=4.249;HRun=1;HaplotypeScore=1.9962;MQ=59.74;MQ0=0;MQRankSum=1.414;QD=11.17;ReadPosRankSum=-1.05;SNPEFF_AMINO_ACID_CHANGE=V210;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4705315_4705451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542744    GT:AD:DP:GQ:PL    0/1:48,39:87:99:1002,0,1615
12    4708150    rs3741926    T    A    989.39    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.592;DB;DP=61;Dels=0.0;FS=3.371;HRun=1;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=1.033;QD=16.22;ReadPosRankSum=0.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536157    GT:AD:DP:GQ:PL    0/1:29,32:61:99:1019,0,903
12    4714008    rs2286576    T    G    286.65    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.857;QD=15.09;ReadPosRankSum=0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000010132    GT:AD:DP:GQ:PL    0/1:9,10:19:99:317,0,280
12    4716598    .    A    C    145.22    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.682;DP=30;Dels=0.0;FS=25.233;HRun=2;HaplotypeScore=1.7262;MQ=58.45;MQ0=0;MQRankSum=-0.517;QD=4.84;ReadPosRankSum=3.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540644    GT:AD:DP:GQ:PL    0/1:6,24:30:99:175,0,184
12    4719169    rs3217058    A    AGT    229.19    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=25.8259;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=-1.067;QD=25.47;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540644    GT:AD:DP:GQ:PL    0/1:4,5:9:49.29:268,0,49
12    4722535    rs10744655    C    T    36.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,111
12    4725134    rs7301885    G    A    1152.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.87;MQ0=0;QD=34.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000010132    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1185,87,0
12    4735737    rs2072358    A    G    746.01    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.915;DB;DP=64;Dels=0.0;FS=2.073;HRun=1;HaplotypeScore=2.7982;MQ=59.64;MQ0=0;MQRankSum=-0.047;QD=11.66;ReadPosRankSum=-0.223;SNPEFF_AMINO_ACID_CHANGE=L777;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    0/1:36,28:64:99:776,0,1092
12    4736495    rs1990312    C    T    940.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_AMINO_ACID_CHANGE=E525K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:973,72,0
12    4736631    rs11063265    A    G    932.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=27.41;SNPEFF_AMINO_ACID_CHANGE=F479;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    1/1:0,34:34:81.19:965,81,0
12    4736677    rs11063266    G    C    1956.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.6;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=T464S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    1/1:0,57:58:99:1990,144,0
12    4736690    rs10774251    A    G    1879.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.61;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=L460;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1912,150,0
12    4737042    rs7972737    G    A    560.08    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=33;Dels=0.0;FS=5.752;HRun=0;HaplotypeScore=0.9998;MQ=58.73;MQ0=0;MQRankSum=1.934;QD=16.97;ReadPosRankSum=-0.669;SNPEFF_AMINO_ACID_CHANGE=H342;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    0/1:15,18:33:99:590,0,511
12    4737318    rs7960207    A    G    2016.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.02;SNPEFF_AMINO_ACID_CHANGE=N250;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2049,162,0
12    4737459    rs2072356    C    T    2823.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.46;MQ0=0;QD=36.66;SNPEFF_AMINO_ACID_CHANGE=S203;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2856,217,0
12    4737715    rs2072355    C    T    2169.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.63;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=G118E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4735662_4737971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000228850    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2203,166,0
12    4758188    rs714621    G    C    135.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.01;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:168,12,0
12    4763349    rs2302247    C    T    199.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266544    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
12    4763780    rs3217056    GCA    G    173.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=16.5972;IndelType=D;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266544    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:215,15,0
12    4766798    rs6489557    T    C    298.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542369    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
12    4768095    rs4147681    T    C    872.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535050    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:905,69,0
12    4768103    rs4766268    G    A    1157.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535050    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1190,93,0
12    4768354    rs7972657    A    C    1516.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535050    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1549,117,0
12    4768437    rs7958182    C    T    442.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535050    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:475,36,0
12    4771682    rs2267549    G    A    1429.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.65;DB;DP=43;Dels=0.0;FS=5.336;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=32.48;ReadPosRankSum=0.743;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535050    GT:AD:DP:GQ:PL    1/1:1,42:43:74.71:1462,75,0
12    4779087    rs1009633    A    G    842.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=35.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396655    GT:AD:DP:GQ:PL    1/1:0,24:24:69.19:876,69,0
12    4791673    rs2302244    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544675    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    4794351    rs2240760    A    G    34.85    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=2.68;ReadPosRankSum=-0.74;SNPEFF_AMINO_ACID_CHANGE=S34G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_4794146_4794491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540688    GT:AD:DP:GQ:PL    0/1:9,4:13:64.84:65,0,326
12    4854539    rs72430129    T    TC    405.62    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.607;DB;DP=17;FS=0.0;HRun=4;HaplotypeScore=39.1334;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=23.86;ReadPosRankSum=-2.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252318    GT:AD:DP:GQ:PL    0/1:5,12:17:88.04:445,0,88
12    5020604    .    G    C    447.29    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.155;QD=11.47;ReadPosRankSum=-1.447;SNPEFF_AMINO_ACID_CHANGE=Q20H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_5020545_5022032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000228858    GT:AD:DP:GQ:PL    0/1:21,18:39:99:477,0,681
12    5021228    rs1048500    T    C    1955.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=36.89;SNPEFF_AMINO_ACID_CHANGE=C228;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_5020545_5022032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228858    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1988,150,0
12    5021348    rs2227910    G    C    1783.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=35.68;SNPEFF_AMINO_ACID_CHANGE=T268;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_5020545_5022032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228858    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1817,141,0
12    5021984    rs4766309    T    A    5829.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.72;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=T480;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_5020545_5022032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228858    GT:AD:DP:GQ:PL    1/1:0,162:162:99:5829,421,0
12    5022041    rs4766310    G    A    3148.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=59.55;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228858    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3182,253,0
12    5154462    rs2359641    T    C    1527.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.82;MQ0=0;QD=29.38;SNPEFF_AMINO_ACID_CHANGE=G383;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_5153085_5155949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252321    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1561,129,0
12    5476044    rs11611543    T    A    835.96    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.713;DB;DP=50;Dels=0.0;FS=1.248;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.987;QD=16.72;ReadPosRankSum=1.612;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-1038A11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543308    GT:AD:DP:GQ:PL    0/1:22,28:50:99:866,0,684
12    5476397    rs10774324    T    C    3655.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-1038A11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543308    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3656,283,0
12    5476562    rs11063636    A    G    769.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-1038A11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543308    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:803,60,0
12    5603632    rs6332    G    A    375.10    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.894;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9575;MQ=50.28;MQ0=0;MQRankSum=-0.894;QD=8.93;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=P84;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_5603298_5604464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NTF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331010    GT:AD:DP:GQ:PL    0/1:20,22:42:99:405,0,356
12    5674754    rs2277398    G    A    2804.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_AMINO_ACID_CHANGE=S899;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_5674724_5674829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327087    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2838,208,0
12    5721962    rs3741837    A    G    2115.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545860    GT:AD:DP:GQ:PL    1/1:0,73:74:99:2148,184,0
12    5916350    rs2277403    G    A    35.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.02;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327087    GT:AD:DP:GQ:PL    0/1:2,3:5:65.07:65,0,68
12    5961048    rs7485945    G    A    173.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541487    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
12    6030301    rs3741901    G    A    899.69    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=49;Dels=0.0;FS=1.19;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.75;QD=18.36;ReadPosRankSum=0.058;SNPEFF_AMINO_ACID_CHANGE=P143S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6030206_6030532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327087    GT:AD:DP:GQ:PL    0/1:18,31:49:99:930,0,521
12    6031772    rs3741905    C    T    128.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327087    GT:AD:DP:GQ:PL    1/1:1,5:6:12.04:160,12,0
12    6062853    rs3759320    C    T    200.76    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=12.55;ReadPosRankSum=1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:9,7:16:99:231,0,310
12    6076781    rs11063962    G    A    612    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.792;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=59.63;MQ0=0;MQRankSum=0.364;QD=9.71;ReadPosRankSum=0.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:39,24:63:99:642,0,1186
12    6076941    rs216851    A    G    155.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:188,15,0
12    6077216    rs11063963    A    G    1079.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.498;DB;DP=78;Dels=0.0;FS=0.986;HRun=1;HaplotypeScore=2.746;MQ=58.81;MQ0=0;MQRankSum=0.555;QD=13.84;ReadPosRankSum=-0.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:39,39:78:99:1109,0,1129
12    6078616    rs2270239    T    G    327.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
12    6080577    rs2238110    G    C    203.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
12    6080595    rs11063965    G    A    172.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
12    6085513    rs216855    A    G    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.33;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,148
12    6090825    rs216866    T    C    172.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.05;MQ0=0;MQRankSum=-0.466;QD=14.36;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:6,6:12:99:202,0,175
12    6091000    rs216867    A    G    1248.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=T2413;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6090952_6091157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1281,102,0
12    6091164    rs216868    G    A    208.87    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.752;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.984;QD=13.92;ReadPosRankSum=0.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:8,7:15:99:239,0,275
12    6092442    rs55867239    G    A    44.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.9;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:2,3:5:56.67:74,0,57
12    6094065    rs2070886    C    T    69.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=11.64;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:2,4:6:67.94:100,0,68
12    6094082    rs24177    G    A    186.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=18.65;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:4,6:10:99:217,0,127
12    6094124    rs144331815    AAC    A    277.45    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=86.3085;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=-1.107;QD=16.32;ReadPosRankSum=-1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:9,8:17:99:316,0,471
12    6094845    rs177702    G    A    340.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:373,27,0
12    6100796    rs216896    C    T    73.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538635    GT:AD:DP:GQ:PL    1/1:0,3:3:9:105,9,0
12    6103844    rs17491334    G    A    134.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=8.93;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:10,5:15:99:164,0,353
12    6105387    rs216902    G    A    227.06    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=21;Dels=0.0;FS=4.32;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.247;QD=10.81;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=C1948;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6105168_6105388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:10,11:21:99:257,0,313
12    6105499    rs216903    T    C    126.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:159,15,0
12    6127943    rs216310    A    G    316.76    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.107;DB;DP=19;Dels=0.0;FS=8.193;HRun=1;HaplotypeScore=0.0;MQ=40.14;MQ0=1;MQRankSum=-1.358;QD=16.67;ReadPosRankSum=-1.358;SNPEFF_AMINO_ACID_CHANGE=T1547;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6127531_6128909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:6,13:19:99:347,0,179
12    6128170    rs1800383    C    G    242.40    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=17;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=46.76;MQ0=0;MQRankSum=-3.387;QD=14.26;ReadPosRankSum=2.011;SNPEFF_AMINO_ACID_CHANGE=D1472H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6127531_6128909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:7,10:17:99:272,0,173
12    6128443    rs216311    T    C    446.04    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=46;Dels=0.0;FS=4.935;HRun=0;HaplotypeScore=0.0;MQ=52.67;MQ0=0;MQRankSum=-2.298;QD=9.7;ReadPosRankSum=0.719;SNPEFF_AMINO_ACID_CHANGE=T1381A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6127531_6128909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:25,21:46:99:476,0,651
12    6133079    rs2854871    T    C    36.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.24;MQ0=0;QD=18.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
12    6134715    rs73051263    G    A    72.45    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.2;MQ0=0;MQRankSum=-0.922;QD=10.35;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:2,5:7:38.06:102,0,38
12    6134949    rs56121649    C    G    548.55    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.481;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.94;MQ0=0;MQRankSum=1.595;QD=14.83;ReadPosRankSum=-0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:15,22:37:99:579,0,396
12    6134987    rs56068059    C    A    544.36    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=52;Dels=0.0;FS=1.275;HRun=0;HaplotypeScore=0.0;MQ=57.04;MQ0=0;MQRankSum=1.051;QD=10.47;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:27,25:52:99:574,0,893
12    6135265    rs34877178    C    T    230.83    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.954;DB;DP=35;Dels=0.0;FS=5.374;HRun=0;HaplotypeScore=0.0;MQ=48.66;MQ0=0;MQRankSum=-3.26;QD=6.6;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:19,16:35:99:261,0,578
12    6135337    rs3858686    G    A    168.57    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.95;MQ0=0;MQRankSum=-1.945;QD=11.24;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:9,6:15:99:199,0,317
12    6135366    rs11063993    G    A    106.23    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.3;MQ0=0;MQRankSum=0.361;QD=11.8;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,180
12    6138253    rs71445694    C    CA    110.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=42.3538;IndelType=I;MQ=57.66;MQ0=0;MQRankSum=0.573;QD=11.02;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:3,6:10:23.73:149,0,24
12    6138385    rs12307335    T    C    972.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=88;Dels=0.0;FS=3.901;HRun=0;HaplotypeScore=0.9983;MQ=55.77;MQ0=0;MQRankSum=2.879;QD=11.05;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:55,33:88:99:1003,0,1835
12    6138410    rs11063999    T    C    2180.52    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=114;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.24;MQ0=0;MQRankSum=-0.97;QD=19.13;ReadPosRankSum=-0.707;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:43,71:114:99:2211,0,1322
12    6138595    rs1800380    C    T    1256.77    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.397;DB;DP=86;Dels=0.0;FS=0.924;HRun=0;HaplotypeScore=1.7334;MQ=58.97;MQ0=0;MQRankSum=-0.602;QD=14.61;ReadPosRankSum=2.485;SNPEFF_AMINO_ACID_CHANGE=R960;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6138508_6138654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:41,45:86:99:1287,0,1361
12    6138702    rs60831677    G    A    461.02    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7331;MQ=59.2;MQ0=0;MQRankSum=-0.589;QD=15.9;ReadPosRankSum=0.938;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:14,15:29:99:491,0,440
12    6143984    rs216321    T    C    894.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6828;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_AMINO_ACID_CHANGE=Q852R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6143854_6143992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,33:33:75.23:928,75,0
12    6145529    rs216325    G    A    344.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.241;DB;DP=24;Dels=0.0;FS=9.034;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.415;QD=14.37;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:12,12:24:99:375,0,302
12    6153514    rs1063857    A    G    272.62    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.893;DB;DP=21;Dels=0.0;FS=4.359;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.582;QD=12.98;ReadPosRankSum=-0.887;SNPEFF_AMINO_ACID_CHANGE=Y795;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6153457_6153617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:8,13:21:99:303,0,236
12    6153534    rs1063856    T    C    224.81    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.304;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=10.71;ReadPosRankSum=0.532;SNPEFF_AMINO_ACID_CHANGE=T789A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6153457_6153617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:11,10:21:99:255,0,275
12    6153659    rs216293    G    T    108.99    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=12.11;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,145
12    6153750    rs216294    A    G    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    6161963    rs10622633    G    GAGA    780.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=41.751;IndelType=I;MQ=45.07;MQ0=0;QD=52.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:2,13:15:39.13:822,39,0
12    6167196    rs1800379    A    G    756.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.216;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.102;QD=15.77;ReadPosRankSum=-0.626;SNPEFF_AMINO_ACID_CHANGE=Y516;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6167015_6167210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:24,24:48:99:787,0,639
12    6172202    rs1800378    T    C    403.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=21.25;SNPEFF_AMINO_ACID_CHANGE=H484R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6172120_6172220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,19:19:33.10:437,33,0
12    6172393    rs2239158    T    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
12    6204902    rs5796209    CA    C    293.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=19.6574;IndelType=D;MQ=63.93;MQ0=0;QD=36.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:335,24,0
12    6219916    rs71582881    C    G    446.41    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.183;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.069;QD=15.39;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    0/1:14,15:29:99:476,0,489
12    6230288    rs6489694    A    G    858.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538563    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:891,66,0
12    6232426    rs2286608    G    A    1059.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261405    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1092,81,0
12    6309895    rs797774    G    A    79.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000009180    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
12    6344174    rs3181295    A    G    103.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538834    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:136,12,0
12    6344600    rs2072372    C    A    488.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.31;DB;DP=34;Dels=0.0;FS=1.5;HRun=2;HaplotypeScore=0.9973;MQ=58.63;MQ0=0;MQRankSum=-0.276;QD=14.38;ReadPosRankSum=-1.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536586    GT:AD:DP:GQ:PL    0/1:17,17:34:99:519,0,576
12    6345199    rs3181300    C    T    31.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.97;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536586    GT:AD:DP:GQ:PL    0/1:2,2:4:61.89:62,0,70
12    6352292    rs9668222    T    A    322.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000009180    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
12    6421495    rs740842    G    A    731.50    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.042;DB;DP=52;Dels=0.0;FS=2.365;HRun=0;HaplotypeScore=0.9665;MQ=58.66;MQ0=0;MQRankSum=-0.426;QD=14.07;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=A35T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6421325_6421530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000011684    GT:AD:DP:GQ:PL    0/1:24,28:52:99:761,0,688
12    6422988    rs2286716    G    T    314.26    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=16;Dels=0.0;FS=2.858;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=19.64;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538208    GT:AD:DP:GQ:PL    0/1:6,10:16:99:344,0,176
12    6427052    rs1468603    C    T    75.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.03;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=H317;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6427023_6427160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449001    GT:AD:DP:GQ:PL    0/1:2,3:5:30.19:105,0,30
12    6428116    rs4764497    T    G    500.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.773;DB;DP=32;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.735;QD=15.63;ReadPosRankSum=-0.057;SNPEFF_AMINO_ACID_CHANGE=I494S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6427911_6428139;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536531    GT:AD:DP:GQ:PL    0/1:16,16:32:99:530,0,507
12    6428621    rs12828469    A    T    98.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.368;QD=12.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535616    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,125
12    6435571    rs10849441    A    G    287.77    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.375;DB;DP=24;Dels=0.0;FS=1.875;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.333;QD=11.99;ReadPosRankSum=0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TNFRSF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162749    GT:AD:DP:GQ:PL    0/1:13,11:24:99:318,0,336
12    6435575    rs10849442    C    T    349.33    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.046;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=12.48;ReadPosRankSum=-0.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TNFRSF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162749    GT:AD:DP:GQ:PL    0/1:13,15:28:99:379,0,326
12    6435753    rs2302350    G    A    117.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TNFRSF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162749    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:150,12,0
12    6437171    rs3217075    T    TGG    288.26    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=18;FS=0.0;HRun=4;HaplotypeScore=46.981;IndelType=I;MQ=57.12;MQ0=0;MQRankSum=-0.049;QD=16.01;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TNFRSF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162749    GT:AD:DP:GQ:PL    0/1:11,7:18:99:327,0,348
12    6439255    rs10849443    A    G    1170.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011684    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1204,90,0
12    6442346    rs1800692    A    G    147.92    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=21;Dels=0.0;FS=8.751;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.616;QD=7.04;ReadPosRankSum=-1.702;SNPEFF_AMINO_ACID_CHANGE=F220S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6442242_6442682;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TNFRSF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440083    GT:AD:DP:GQ:PL    0/1:13,8:21:99:178,0,469
12    6457062    rs2228576    T    C    176.90    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.08;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=T363A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6456013_6457419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540037    GT:AD:DP:GQ:PL    0/1:3,8:11:92.56:207,0,93
12    6458084    rs3764875    C    T    2305.87    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.188;DB;DP=189;Dels=0.0;FS=1.155;HRun=2;HaplotypeScore=4.1012;MQ=59.88;MQ0=0;MQRankSum=-1.882;QD=12.2;ReadPosRankSum=-0.223;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366131    GT:AD:DP:GQ:PL    0/1:97,92:189:99:2336,0,2919
12    6458274    rs3764874    G    C    2131.11    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.132;DB;DP=137;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=15.56;ReadPosRankSum=1.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366131    GT:AD:DP:GQ:PL    0/1:58,78:137:99:2161,0,1799
12    6463383    rs11609789    C    T    37.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.5;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536087    GT:AD:DP:GQ:PL    0/1:1,2:3:18.64:67,0,19
12    6463862    rs11614164    G    A    1062.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.73;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536087    GT:AD:DP:GQ:PL    1/1:0,31:31:87.23:1095,87,0
12    6483463    rs3741914    T    C    582.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536411    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:615,45,0
12    6495275    rs2364480    C    A    1390.58    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=4.176;DB;DP=114;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.9332;MQ=57.88;MQ0=0;MQRankSum=0.645;QD=12.2;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=A153;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6495232_6495328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LTBR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539925    GT:AD:DP:GQ:PL    0/1:65,49:114:99:1421,0,1638
12    6495635    rs5796232    C    CA    415.85    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=43.1829;IndelType=I;MQ=60.31;MQ0=0;MQRankSum=0.0;QD=29.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LTBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440421    GT:AD:DP:GQ:PL    0/1:3,11:14:77.81:455,0,78
12    6499533    rs2286599    G    A    59.60    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-0.684;QD=6.62;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LTBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440421    GT:AD:DP:GQ:PL    0/1:5,4:9:89.60:90,0,181
12    6500105    rs12354    T    G    1143.96    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.139;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4679;MQ=59.69;MQ0=0;MQRankSum=-0.726;QD=15.46;ReadPosRankSum=-1.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LTBR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440421    GT:AD:DP:GQ:PL    0/1:33,41:74:99:1174,0,1044
12    6551492    rs1986755    G    A    165.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266557    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
12    6551509    rs3759339    C    T    253.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266557    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
12    6551899    rs2886090    C    T    195.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.66;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266557    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
12    6560473    rs2532502    A    G    1415.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=30.76;SNPEFF_AMINO_ACID_CHANGE=H233R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6560434_6560884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266557    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1448,108,0
12    6560573    rs1059501    G    T    592.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.041;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5761;MQ=58.84;MQ0=0;MQRankSum=0.0;QD=29.64;ReadPosRankSum=-1.734;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541233    GT:AD:DP:GQ:PL    1/1:1,19:20:21:626,21,0
12    6562285    rs2041384    C    T    34.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=4.9;ReadPosRankSum=-0.937;SNPEFF_AMINO_ACID_CHANGE=C39;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6562233_6562463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:4,3:7:64.27:64,0,102
12    6562293    rs2041385    C    T    102.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.79;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=A42V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6562233_6562463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:4,4:8:95.56:132,0,96
12    6562753    rs2532501    A    G    343.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.41;DB;DP=26;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.256;QD=13.21;ReadPosRankSum=0.718;SNPEFF_AMINO_ACID_CHANGE=M146V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6562613_6562882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:13,13:26:99:374,0,427
12    6562810    rs2532500    A    G    261.94    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.612;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.188;QD=9.36;ReadPosRankSum=-0.329;SNPEFF_AMINO_ACID_CHANGE=T165A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6562613_6562882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:17,11:28:99:292,0,524
12    6562823    rs2041387    C    T    285.75    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.425;DB;DP=29;Dels=0.0;FS=5.59;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.206;QD=9.85;ReadPosRankSum=-1.294;SNPEFF_AMINO_ACID_CHANGE=A169V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6562613_6562882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:16,13:29:99:316,0,430
12    6562836    rs2041388    G    A    277.10    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.287;DB;DP=25;Dels=0.0;FS=3.741;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.958;QD=11.08;ReadPosRankSum=-0.52;SNPEFF_AMINO_ACID_CHANGE=P173;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6562613_6562882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:14,11:25:99:307,0,440
12    6562931    rs2534698    T    C    65.95    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.24;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266557    GT:AD:DP:GQ:PL    0/1:5,3:8:95.94:96,0,181
12    6567787    rs2243750    T    C    464.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.741;DB;DP=28;Dels=0.0;FS=2.02;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.209;QD=16.58;ReadPosRankSum=0.952;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544826    GT:AD:DP:GQ:PL    0/1:12,16:28:99:494,0,412
12    6569983    rs2243977    C    T    426.84    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.281;QD=11.86;ReadPosRankSum=-1.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544021    GT:AD:DP:GQ:PL    0/1:20,16:36:99:457,0,557
12    6570163    rs2534710    C    T    37.73    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=18;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.8667;MQ=58.71;MQ0=0;MQRankSum=0.922;QD=2.1;ReadPosRankSum=-2.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544021    GT:AD:DP:GQ:PL    0/1:11,7:18:67.72:68,0,318
12    6570966    rs1045548    A    G    66.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.08;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544021    GT:AD:DP:GQ:PL    0/1:3,3:6:96.49:96,0,100
12    6572048    rs1045452    A    G    93.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.64;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:2,4:6:65.46:124,0,65
12    6573856    rs1034969    G    T    98.84    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=10.98;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,143
12    6574301    rs1017101    G    T    114.78    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.96;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:145,0,25
12    6575044    rs2072375    G    T    549.23    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=49;Dels=0.0;FS=1.117;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=11.21;ReadPosRankSum=1.556;SNPEFF_AMINO_ACID_CHANGE=A84;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6575008_6575166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355479    GT:AD:DP:GQ:PL    0/1:29,20:49:99:579,0,951
12    6575191    rs2534718    A    T    1530.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266556    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1563,117,0
12    6579565    rs2534720    A    G    361.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545700    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:394,33,0
12    6579757    rs2532489    T    C    421.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAPBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545700    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:454,36,0
12    6601743    rs1001127    A    C    319.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.718;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=16.0;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229238    GT:AD:DP:GQ:PL    0/1:10,10:20:99:350,0,341
12    6601825    rs1558334    T    C    113.60    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=18.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229238    GT:AD:DP:GQ:PL    0/1:1,5:6:27.60:144,0,28
12    6601834    rs1558335    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229238    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
12    6601980    rs4764600    C    G    400.53    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.302;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.714;QD=25.03;ReadPosRankSum=0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229238    GT:AD:DP:GQ:PL    0/1:2,14:16:34.53:431,0,35
12    6602468    rs7976591    G    A    40.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537701    GT:AD:DP:GQ:PL    0/1:2,2:4:31.62:71,0,32
12    6604076    rs7971237    A    G    31.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.2;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315579    GT:AD:DP:GQ:PL    0/1:4,2:6:61.17:61,0,134
12    6604418    rs6489718    C    T    456.04    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.416;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.104;QD=13.41;ReadPosRankSum=-0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536538    GT:AD:DP:GQ:PL    0/1:19,15:34:99:486,0,578
12    6619081    rs144245376    TCTA    T    418.68    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=18;FS=7.375;HRun=0;HaplotypeScore=70.3021;IndelType=D;MQ=58.71;MQ0=0;MQRankSum=-0.578;QD=23.26;ReadPosRankSum=2.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315579    GT:AD:DP:GQ:PL    0/1:8,10:18:99:458,0,494
12    6619284    rs714774    C    G    414.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.456;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9367;MQ=60.0;MQ0=0;MQRankSum=1.41;QD=13.83;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=Q83E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6619241_6619299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315579    GT:AD:DP:GQ:PL    0/1:15,15:30:99:445,0,539
12    6620495    rs7358768    G    T    343.08    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.505;DB;DP=25;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9469;MQ=58.13;MQ0=0;MQRankSum=-0.903;QD=13.72;ReadPosRankSum=-0.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539714    GT:AD:DP:GQ:PL    0/1:11,14:25:99:373,0,334
12    6620602    rs7358654    A    G    100.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=14.42;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539714    GT:AD:DP:GQ:PL    0/1:3,4:7:77.43:131,0,77
12    6623382    rs4764604    A    G    1471.87    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.105;DB;DP=106;Dels=0.0;FS=4.25;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=-1.043;QD=13.89;ReadPosRankSum=2.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539714    GT:AD:DP:GQ:PL    0/1:59,47:106:99:1502,0,1946
12    6623389    rs4764605    T    C    1475.40    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=4.563;DB;DP=112;Dels=0.0;FS=3.976;HRun=1;HaplotypeScore=0.9958;MQ=59.79;MQ0=0;MQRankSum=-1.864;QD=13.17;ReadPosRankSum=1.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539714    GT:AD:DP:GQ:PL    0/1:61,51:112:99:1505,0,1925
12    6624139    rs9788151    T    C    392.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.167;DB;DP=32;Dels=0.0;FS=7.259;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=12.26;ReadPosRankSum=0.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539714    GT:AD:DP:GQ:PL    0/1:16,16:32:99:422,0,506
12    6631169    rs917634    C    A    842.03    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.845;DB;DP=62;Dels=0.0;FS=1.02;HRun=1;HaplotypeScore=1.7621;MQ=59.63;MQ0=0;MQRankSum=-1.83;QD=13.58;ReadPosRankSum=0.156;SNPEFF_AMINO_ACID_CHANGE=I512;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6630964_6631203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382457    GT:AD:DP:GQ:PL    0/1:32,30:62:99:872,0,1043
12    6635567    rs7311174    A    T    943.14    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=56;Dels=0.0;FS=2.387;HRun=2;HaplotypeScore=0.8321;MQ=59.17;MQ0=0;MQRankSum=0.198;QD=16.84;ReadPosRankSum=-0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538600    GT:AD:DP:GQ:PL    0/1:23,33:56:99:973,0,644
12    6637845    rs2072374    T    C    480.34    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.272;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.452;QD=13.72;ReadPosRankSum=0.416;SNPEFF_AMINO_ACID_CHANGE=R1055;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6637845_6638022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545962    GT:AD:DP:GQ:PL    0/1:19,16:35:99:510,0,543
12    6638116    rs740850    C    T    985.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.232;DB;DP=68;Dels=0.0;FS=2.061;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.449;QD=14.49;ReadPosRankSum=0.051;SNPEFF_AMINO_ACID_CHANGE=N1116;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6638111_6638205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545962    GT:AD:DP:GQ:PL    0/1:34,34:68:99:1015,0,886
12    6638666    rs7316224    C    T    345.98    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=0.149;DB;DP=43;Dels=0.0;FS=8.123;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.257;QD=8.05;ReadPosRankSum=-0.961;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382457    GT:AD:DP:GQ:PL    0/1:28,15:43:99:376,0,796
12    6639088    rs1043262    A    G    482.95    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.45;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.522;QD=14.2;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=V1222;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6638941_6639124;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCAPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545962    GT:AD:DP:GQ:PL    0/1:18,16:34:99:513,0,600
12    6643927    rs3741915    T    G    64.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.92;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFFO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336604    GT:AD:DP:GQ:PL    0/1:2,3:5:62.07:95,0,62
12    6675055    rs1558333    T    G    60.89    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=15.22;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309577    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:91,0,29
12    6709945    rs12816349    G    A    671.66    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=4.265;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6653;MQ=59.09;MQ0=0;MQRankSum=0.138;QD=13.17;ReadPosRankSum=0.786;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430771    GT:AD:DP:GQ:PL    0/1:30,21:51:99:702,0,905
12    6747295    rs1045553    G    A    171.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414226    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
12    6747578    rs1882553    G    C    608.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542357    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:642,48,0
12    6749093    rs2365087    A    G    111.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535884    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
12    6756240    rs3803130    A    G    243.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341550    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
12    6762026    rs4764506    T    C    2027.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DB;DP=67;Dels=0.0;FS=4.327;HRun=3;HaplotypeScore=4.9812;MQ=59.03;MQ0=0;MQRankSum=1.679;QD=30.26;ReadPosRankSum=1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493267    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2060,171,0
12    6766197    rs4764615    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341550    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    6777069    rs3835029    TTGC    T    257.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=137.5389;IndelType=D;MQ=57.39;MQ0=0;QD=9.52;SNPEFF_AMINO_ACID_CHANGE=QQ398Q;SNPEFF_CODON_CHANGE=cagcaa/caa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_12_6775904_6777281;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF384;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355772    GT:AD:DP:GQ:PL    1/1:20,6:27:24.04:299,24,0
12    6804902    rs10849498    A    G    512.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536467    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:545,39,0
12    6839453    rs871365    G    A    242.26    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.289;QD=18.64;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537022    GT:AD:DP:GQ:PL    0/1:5,8:13:99:272,0,116
12    6840209    rs3168600    G    A    183.16    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.504;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.239;QD=6.78;ReadPosRankSum=0.345;SNPEFF_AMINO_ACID_CHANGE=G227E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6840166_6840998;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538410    GT:AD:DP:GQ:PL    0/1:19,8:27:99:213,0,617
12    6857898    rs35247189    C    A    499.26    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=42;Dels=0.0;FS=4.492;HRun=0;HaplotypeScore=1.8665;MQ=56.73;MQ0=0;MQRankSum=-1.314;QD=11.89;ReadPosRankSum=-1.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536207    GT:AD:DP:GQ:PL    0/1:23,19:42:99:529,0,694
12    6859308    rs2302370    T    C    1148.32    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=0.413;DB;DP=84;Dels=0.0;FS=3.264;HRun=2;HaplotypeScore=1.8914;MQ=59.73;MQ0=0;MQRankSum=1.415;QD=13.67;ReadPosRankSum=1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536207    GT:AD:DP:GQ:PL    0/1:41,42:84:99:1178,0,1113
12    6859797    rs2302368    T    C    156.58    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=19;Dels=0.0;FS=5.006;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.219;QD=8.24;ReadPosRankSum=-0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536207    GT:AD:DP:GQ:PL    0/1:13,6:19:99:187,0,479
12    6861043    rs2302367    T    C    1913.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203630    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1947,144,0
12    6879202    rs4764622    T    C    154.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTMS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540874    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:187,15,0
12    6879279    rs4764621    A    G    434.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=27.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTMS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540874    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:467,39,0
12    6883700    rs2365095    C    T    357.86    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.356;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.17;MQ0=0;MQRankSum=-0.684;QD=12.78;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PTMS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309083    GT:AD:DP:GQ:PL    0/1:13,15:28:99:388,0,286
12    6887020    rs870849    T    C    642.64    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=43;Dels=0.0;FS=1.177;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=14.95;ReadPosRankSum=-1.064;SNPEFF_AMINO_ACID_CHANGE=I455T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6886957_6887087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000203629    GT:AD:DP:GQ:PL    0/1:19,24:43:99:673,0,586
12    6909380    rs75372499    TG    T    1301.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=1;HaplotypeScore=257.3796;IndelType=D;MQ=59.28;MQ0=0;QD=40.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011653    GT:AD:DP:GQ:PL    1/1:0,32:32:96.32:1344,96,0
12    6909388    rs2365568    A    G    1189.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011653    GT:AD:DP:GQ:PL    1/1:0,32:32:90.30:1223,90,0
12    6909442    rs2255301    T    C    1848.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011653    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1882,141,0
12    6925149    rs10744715    C    T    166.03    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.0;QD=13.84;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536590    GT:AD:DP:GQ:PL    0/1:5,7:12:99:196,0,176
12    6926363    rs1055141    T    C    557.21    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;MQRankSum=1.268;QD=15.48;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=S341;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6926296_6926496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000011653    GT:AD:DP:GQ:PL    0/1:17,19:36:99:587,0,531
12    6927470    rs12226953    C    T    280.74    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=17.55;ReadPosRankSum=-0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536563    GT:AD:DP:GQ:PL    0/1:6,10:16:99:311,0,169
12    6928075    rs12821756    T    C    354.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=35;Dels=0.0;FS=1.524;HRun=2;HaplotypeScore=0.0;MQ=57.31;MQ0=0;MQRankSum=1.067;QD=10.13;ReadPosRankSum=1.767;SNPEFF_AMINO_ACID_CHANGE=C447;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6928013_6928080;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000011653    GT:AD:DP:GQ:PL    0/1:20,15:35:99:385,0,584
12    6928135    rs55764611    T    G    295.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=52.81;MQ0=0;QD=17.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536563    GT:AD:DP:GQ:PL    1/1:0,17:17:30.04:329,30,0
12    6928136    rs2071077    A    G    63.09    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=52.81;MQ0=0;MQRankSum=-1.493;QD=3.71;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536563    GT:AD:DP:GQ:PL    0/1:9,8:17:93.09:93,0,134
12    6933787    rs1051409    A    G    427.70    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.334;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.014;QD=15.28;ReadPosRankSum=-1.189;SNPEFF_AMINO_ACID_CHANGE=V241;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6932634_6933931;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR162;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311268    GT:AD:DP:GQ:PL    0/1:13,15:28:99:458,0,374
12    6935955    rs35717080    T    C    960.34    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.966;DB;DP=54;Dels=0.0;FS=1.317;HRun=2;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;MQRankSum=0.534;QD=17.78;ReadPosRankSum=0.59;SNPEFF_AMINO_ACID_CHANGE=G147;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6935818_6936586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR162;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382315    GT:AD:DP:GQ:PL    0/1:25,29:54:99:990,0,664
12    6935977    rs11612427    A    G    531.65    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.924;QD=9.67;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=R155G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6935818_6936586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR162;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382315    GT:AD:DP:GQ:PL    0/1:32,23:55:99:562,0,1080
12    6939850    rs10744716    A    G    357.75    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.44;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=57.87;MQ0=0;MQRankSum=0.588;QD=10.84;ReadPosRankSum=0.71;SNPEFF_AMINO_ACID_CHANGE=T116A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6939803_6939934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290510    GT:AD:DP:GQ:PL    0/1:20,13:33:99:388,0,569
12    6940254    rs7305463    A    G    1423.50    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=134;Dels=0.0;FS=9.891;HRun=5;HaplotypeScore=3.4105;MQ=59.66;MQ0=0;MQRankSum=1.843;QD=10.62;ReadPosRankSum=-1.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR162;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311268    GT:AD:DP:GQ:PL    0/1:73,61:134:99:1453,0,2326
12    6941021    rs1047771    G    A    162.19    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=10.14;ReadPosRankSum=-0.177;SNPEFF_AMINO_ACID_CHANGE=G200;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6940989_6941078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290510    GT:AD:DP:GQ:PL    0/1:10,6:16:99:192,0,288
12    6942672    rs4963513    A    C    135.41    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=5.89;ReadPosRankSum=0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544813    GT:AD:DP:GQ:PL    0/1:16,7:23:99:165,0,519
12    6942823    rs4963512    A    G    511.43    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.424;DB;DP=49;Dels=0.0;FS=1.199;HRun=0;HaplotypeScore=2.3548;MQ=59.53;MQ0=0;MQRankSum=0.885;QD=10.44;ReadPosRankSum=2.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544813    GT:AD:DP:GQ:PL    0/1:29,20:49:99:541,0,903
12    6943243    rs11064425    T    C    566.30    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=49;Dels=0.0;FS=2.755;HRun=0;HaplotypeScore=1.5226;MQ=59.53;MQ0=0;MQRankSum=-0.564;QD=11.56;ReadPosRankSum=-0.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544813    GT:AD:DP:GQ:PL    0/1:25,24:49:99:596,0,810
12    6946247    rs1129646    G    T    396.78    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.577;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.655;QD=14.7;ReadPosRankSum=1.237;SNPEFF_AMINO_ACID_CHANGE=A334;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6946149_6946250;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290510    GT:AD:DP:GQ:PL    0/1:13,14:27:99:427,0,336
12    6946360    rs10849527    C    T    109.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=10.99;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538102    GT:AD:DP:GQ:PL    0/1:5,5:10:99:140,0,160
12    6946545    rs4963510    C    A    131.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=14;Dels=0.0;FS=6.803;HRun=0;HaplotypeScore=0.7887;MQ=58.66;MQ0=0;MQRankSum=0.71;QD=9.43;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538102    GT:AD:DP:GQ:PL    0/1:8,6:14:99:162,0,248
12    6948468    rs1129649    T    C    66.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.27;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=I112T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6948461_6948670;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451242    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:96,0,68
12    6959095    rs67218654    AC    A    229.63    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=3.272;DB;DP=22;FS=0.0;HRun=3;HaplotypeScore=52.214;IndelType=D;MQ=60.49;MQ0=0;MQRankSum=0.0;QD=10.44;ReadPosRankSum=-0.735;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446553    GT:AD:DP:GQ:PL    0/1:13,9:22:99:269,0,496
12    6965194    rs2226955    A    G    920.72    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DB;DP=74;Dels=0.0;FS=0.908;HRun=2;HaplotypeScore=3.6897;MQ=59.38;MQ0=0;MQRankSum=0.831;QD=12.44;ReadPosRankSum=-2.293;SNPEFF_AMINO_ACID_CHANGE=G106;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_6965181_6965314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229268    GT:AD:DP:GQ:PL    0/1:40,34:74:99:951,0,1088
12    6965740    rs2238114    C    A    137.88    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-0.811;QD=10.61;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229268    GT:AD:DP:GQ:PL    0/1:7,6:13:99:168,0,228
12    6965763    rs72181812    AAG    A    112.89    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=15;FS=2.363;HRun=0;HaplotypeScore=143.4474;IndelType=D;MQ=55.11;MQ0=0;MQRankSum=-1.867;QD=7.53;ReadPosRankSum=-1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229268    GT:AD:DP:GQ:PL    0/1:9,6:15:99:152,0,400
12    6965805    rs66621175    T    C    124.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.71;MQ0=0;MQRankSum=0.0;QD=5.19;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229268    GT:AD:DP:GQ:PL    0/1:8,16:24:99:155,0,208
12    6969731    rs2071059    A    G    270.21    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=15.89;ReadPosRankSum=-1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535080    GT:AD:DP:GQ:PL    0/1:8,9:17:99:300,0,237
12    7014607    rs10849538    A    G    53.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.988;QD=8.93;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007969    GT:AD:DP:GQ:PL    0/1:3,3:6:83.59:84,0,100
12    7014962    rs2071071    A    C    304.80    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.083;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.496;QD=8.71;ReadPosRankSum=0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007969    GT:AD:DP:GQ:PL    0/1:21,13:35:99:335,0,662
12    7015915    rs1007924    A    G    319.61    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.208;QD=12.29;ReadPosRankSum=0.934;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415834    GT:AD:DP:GQ:PL    0/1:15,11:26:99:350,0,538
12    7016449    rs3741921    C    T    1882.12    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=128;Dels=0.0;FS=0.675;HRun=0;HaplotypeScore=0.6651;MQ=59.82;MQ0=0;MQRankSum=-1.182;QD=14.7;ReadPosRankSum=1.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415834    GT:AD:DP:GQ:PL    0/1:59,69:128:99:1912,0,1839
12    7018949    rs2301137    C    T    114.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=7.66;ReadPosRankSum=-0.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415834    GT:AD:DP:GQ:PL    0/1:10,5:15:99:145,0,351
12    7022085    rs1057077    T    A    2059.64    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=3.444;DB;DP=129;Dels=0.0;FS=2.294;HRun=0;HaplotypeScore=3.1023;MQ=59.64;MQ0=0;MQRankSum=-0.631;QD=15.97;ReadPosRankSum=0.418;SNPEFF_AMINO_ACID_CHANGE=V317E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7021894_7022191;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000007969    GT:AD:DP:GQ:PL    0/1:60,68:129:99:2090,0,1722
12    7023123    rs710415    A    G    1040.91    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.598;DB;DP=91;Dels=0.0;FS=7.025;HRun=1;HaplotypeScore=0.9832;MQ=59.49;MQ0=0;MQRankSum=0.258;QD=11.44;ReadPosRankSum=-0.686;SNPEFF_AMINO_ACID_CHANGE=N187D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7023055_7023235;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429740    GT:AD:DP:GQ:PL    0/1:46,45:91:99:1071,0,1317
12    7023300    rs710416    A    C    268.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=18;Dels=0.0;FS=3.59;HRun=2;HaplotypeScore=0.9734;MQ=55.76;MQ0=0;MQRankSum=-0.241;QD=14.93;ReadPosRankSum=-1.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429740    GT:AD:DP:GQ:PL    0/1:9,9:18:99:299,0,208
12    7025155    rs11064462    G    A    274.75    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=58.84;MQ0=0;MQRankSum=0.684;QD=13.74;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007969    GT:AD:DP:GQ:PL    0/1:11,9:20:99:305,0,345
12    7026893    rs77459460    A    AG    713.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=44.5152;IndelType=I;MQ=60.63;MQ0=0;QD=41.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536199    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:756,51,0
12    7044647    rs72518415    A    AG    692.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=32.6868;IndelType=I;MQ=63.71;MQ0=0;QD=40.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356654    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:734,51,0
12    7045891    rs66756893    A    ACAG    954.50    PASS    AB=0.799;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.854;DB;DP=115;FS=4.289;HRun=0;HaplotypeScore=567.3472;IndelType=I;MQ=59.26;MQ0=0;MQRankSum=0.468;QD=8.3;ReadPosRankSum=-1.496;SNPEFF_AMINO_ACID_CHANGE=-488Q;SNPEFF_CODON_CHANGE=-/CAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_12_7044710_7046724;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356654    GT:AD:DP:GQ:PL    0/1:76,24:115:99:994,0,243
12    7049999    rs2071076    C    T    456.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=28;Dels=0.0;FS=3.08;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.277;QD=16.32;ReadPosRankSum=1.509;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541029    GT:AD:DP:GQ:PL    0/1:12,16:28:99:487,0,412
12    7053085    rs3087835    A    G    37.60    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=3.13;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229279    GT:AD:DP:GQ:PL    0/1:9,3:12:67.59:68,0,339
12    7053149    rs1044189    A    C    169.93    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=8.09;ReadPosRankSum=-1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229279    GT:AD:DP:GQ:PL    0/1:13,8:21:99:200,0,476
12    7053362    rs915997    A    G    603.98    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=44;Dels=0.0;FS=1.402;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=13.73;ReadPosRankSum=0.728;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229279    GT:AD:DP:GQ:PL    0/1:23,21:44:99:634,0,742
12    7054859    rs2019743    G    A    170.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229279    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
12    7055860    rs2301262    T    C    182.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.054;QD=20.23;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229279    GT:AD:DP:GQ:PL    0/1:3,6:9:56.82:212,0,57
12    7061466    rs4963514    A    G    208.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536521    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
12    7065281    rs10744724    C    T    591.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=26.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534900    GT:AD:DP:GQ:PL    1/1:0,22:22:45.15:625,45,0
12    7065406    rs7963446    G    A    976.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534900    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1010,75,0
12    7065576    rs2110071    G    A    1511.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=32.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534900    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1545,114,0
12    7065635    rs2110072    T    C    1626.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.35;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=G287;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7065582_7065731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447931    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1660,126,0
12    7069425    rs28579154    G    C    158.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.296;DB;DP=18;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=3.9547;MQ=47.12;MQ0=0;MQRankSum=0.546;QD=8.8;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536013    GT:AD:DP:GQ:PL    1/1:6,12:18:18.02:191,18,0
12    7069620    rs759052    T    C    684.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.92;MQ0=0;QD=29.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535923    GT:AD:DP:GQ:PL    1/1:0,23:23:60.17:717,60,0
12    7069654    rs759053    G    A    377.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535923    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:410,30,0
12    7079215    rs7301709    T    G    183.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=26.19;SNPEFF_AMINO_ACID_CHANGE=E75A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7079119_7079226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545167    GT:AD:DP:GQ:PL    1/1:0,7:7:21.03:216,21,0
12    7080187    rs11064480    C    G    169.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.53;QD=9.44;ReadPosRankSum=-0.618;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399433    GT:AD:DP:GQ:PL    0/1:9,9:18:99:200,0,292
12    7080210    rs113953006    A    AG    933.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=162.6259;IndelType=I;MQ=58.99;MQ0=0;QD=40.6;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399433    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:976,69,0
12    7090659    rs76299086    A    AG    1729.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=1;HaplotypeScore=77.6353;IndelType=I;MQ=60.51;MQ0=0;QD=43.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LPCAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536971    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1771,120,0
12    7169661    rs11064497    C    T    69.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.98;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489541    GT:AD:DP:GQ:PL    0/1:2,3:5:53.40:100,0,53
12    7170336    rs12146727    G    A    1017.67    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.244;DB;DP=74;Dels=0.0;FS=4.635;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.56;QD=13.75;ReadPosRankSum=-0.515;SNPEFF_AMINO_ACID_CHANGE=R101H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7170194_7170371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382222    GT:AD:DP:GQ:PL    0/1:40,34:74:99:1048,0,1193
12    7171338    rs16933078    T    A    65.84    QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.113;DB;DP=34;Dels=0.0;FS=2.294;HRun=0;HaplotypeScore=1.9997;MQ=55.06;MQ0=0;MQRankSum=-3.214;QD=1.94;ReadPosRankSum=-1.701;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413211    GT:AD:DP:GQ:PL    0/1:26,8:34:95.84:96,0,873
12    7171507    rs11064498    A    G    1235.92    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=86;Dels=0.0;FS=1.978;HRun=2;HaplotypeScore=3.6332;MQ=58.65;MQ0=0;MQRankSum=-0.798;QD=14.37;ReadPosRankSum=-1.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413211    GT:AD:DP:GQ:PL    0/1:46,40:86:99:1266,0,1510
12    7172241    rs7968584    C    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403949    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,72
12    7172665    rs112796495    C    CAAAG    714.36    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=78.167;IndelType=I;MQ=54.52;MQ0=0;MQRankSum=-2.327;QD=32.47;ReadPosRankSum=-0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403949    GT:AD:DP:GQ:PL    0/1:13,9:22:99:753,0,456
12    7174770    rs2192137    A    G    863.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.45;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403949    GT:AD:DP:GQ:PL    1/1:0,26:26:75.19:896,75,0
12    7175872    rs11838267    T    C    182.60    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=5.229;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.895;QD=18.26;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403949    GT:AD:DP:GQ:PL    0/1:3,7:10:92.22:213,0,92
12    7176978    rs12371227    C    T    65.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.16;MQ0=0;MQRankSum=-0.358;QD=13.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463798    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:96,0,69
12    7178019    rs7183    G    T    394.29    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.882;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=0.121;QD=11.6;ReadPosRankSum=-1.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461983    GT:AD:DP:GQ:PL    0/1:18,16:34:99:424,0,663
12    7188780    rs72462370    GT    G    132.70    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.399;DB;DP=81;FS=0.0;HRun=16;HaplotypeScore=557.8434;IndelType=D;MQ=53.07;MQ0=0;MQRankSum=2.539;QD=1.64;ReadPosRankSum=3.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290575    GT:AD:DP:GQ:PL    0/1:61,11:81:99:172,0,493
12    7242204    rs1126605    C    T    1400.89    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.171;DB;DP=114;Dels=0.0;FS=7.441;HRun=2;HaplotypeScore=1.9145;MQ=59.43;MQ0=0;MQRankSum=-0.367;QD=12.29;ReadPosRankSum=-1.457;SNPEFF_AMINO_ACID_CHANGE=E150K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7242183_7242329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535233    GT:AD:DP:GQ:PL    0/1:59,55:114:99:1431,0,1869
12    7242299    rs1801046    G    A    667.24    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.197;DB;DP=48;Dels=0.0;FS=3.675;HRun=1;HaplotypeScore=0.8667;MQ=59.52;MQ0=0;MQRankSum=-2.307;QD=13.9;ReadPosRankSum=-0.093;SNPEFF_AMINO_ACID_CHANGE=S118L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7242183_7242329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C1R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535233    GT:AD:DP:GQ:PL    0/1:26,22:48:99:697,0,869
12    7254787    rs1075425    C    T    454.90    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=2.457;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.189;QD=26.76;ReadPosRankSum=0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C1RL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266542    GT:AD:DP:GQ:PL    0/1:3,14:17:45.11:485,0,45
12    7274573    rs2290240    A    T    67.67    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=6.77;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266560    GT:AD:DP:GQ:PL    0/1:7,3:10:97.66:98,0,210
12    7277236    rs2290237    T    A    732.03    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=0.719;DB;DP=86;Dels=0.0;FS=1.074;HRun=1;HaplotypeScore=0.5784;MQ=59.73;MQ0=0;MQRankSum=0.73;QD=8.51;ReadPosRankSum=-1.346;SNPEFF_AMINO_ACID_CHANGE=M115L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7277225_7277326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266560    GT:AD:DP:GQ:PL    0/1:50,31:86:99:762,0,1379
12    7281317    rs10963    C    T    140.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.61;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=D19N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7281299_7281538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266560    GT:AD:DP:GQ:PL    0/1:4,5:9:99:171,0,129
12    7287886    rs6488452    A    C    152.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.14;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.328;QD=8.49;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538933    GT:AD:DP:GQ:PL    0/1:12,6:18:99:183,0,347
12    7287914    rs2278822    C    T    95.01    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.768;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-1.113;QD=3.8;ReadPosRankSum=-1.877;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538933    GT:AD:DP:GQ:PL    0/1:19,6:25:99:125,0,596
12    7288432    rs7302230    A    G    482.02    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DB;DP=52;Dels=0.0;FS=1.136;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=9.27;ReadPosRankSum=-1.048;SNPEFF_AMINO_ACID_CHANGE=S209G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7288400_7288549;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266546    GT:AD:DP:GQ:PL    0/1:34,18:52:99:512,0,1094
12    7288734    rs2278823    G    A    378.16    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.691;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=13.51;ReadPosRankSum=1.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534830    GT:AD:DP:GQ:PL    0/1:15,13:28:99:408,0,497
12    7293796    rs2305341    C    G    2053.41    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=2.566;DB;DP=117;Dels=0.0;FS=1.789;HRun=1;HaplotypeScore=2.7342;MQ=59.61;MQ0=0;MQRankSum=0.357;QD=17.55;ReadPosRankSum=0.711;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535668    GT:AD:DP:GQ:PL    0/1:46,70:117:99:2083,0,1502
12    7294657    rs5796260    G    GT    139.34    PASS    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=32;FS=0.0;HRun=16;HaplotypeScore=248.6422;IndelType=I;MQ=48.92;MQ0=0;MQRankSum=-1.642;QD=4.35;ReadPosRankSum=-0.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535668    GT:AD:DP:GQ:PL    0/1:19,5:32:33.57:178,0,34
12    7309199    rs7296261    G    A    616.78    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=1.938;DB;DP=28;Dels=0.0;FS=4.961;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=1.248;QD=22.03;ReadPosRankSum=-0.611;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLSTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266546    GT:AD:DP:GQ:PL    0/1:9,19:28:99:647,0,221
12    7360143    rs3825405    C    A    94.88    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=6.78;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545574    GT:AD:DP:GQ:PL    0/1:10,4:14:99:125,0,354
12    7362204    rs146249010    G    GCTGAGTCGGTGGAGTAATGTGCAGAGTTTGAT    3532.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=490.8785;IndelType=I;MQ=55.33;MQ0=0;QD=135.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396637    GT:AD:DP:GQ:PL    1/1:5,3:26:69.23:3532,69,0
12    7457217    rs7485573    C    T    287.51    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.279;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=59.03;MQ0=0;MQRankSum=-1.271;QD=11.98;ReadPosRankSum=0.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399422    GT:AD:DP:GQ:PL    0/1:14,10:24:99:318,0,457
12    7463241    rs7968241    A    T    831.27    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.07;DB;DP=53;Dels=0.0;FS=2.386;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.142;QD=15.68;ReadPosRankSum=-1.391;SNPEFF_AMINO_ACID_CHANGE=P173;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7463135_7463342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399422    GT:AD:DP:GQ:PL    0/1:23,30:53:99:861,0,701
12    7463398    rs10843387    T    C    347.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.812;DB;DP=21;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.604;QD=16.55;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399422    GT:AD:DP:GQ:PL    0/1:9,12:21:99:378,0,301
12    7463491    rs7962994    C    G    200.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399422    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:233,18,0
12    7470534    rs7968312    A    T    131.60    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=7.74;ReadPosRankSum=-1.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399422    GT:AD:DP:GQ:PL    0/1:11,6:17:99:162,0,389
12    7477298    rs10743732    G    A    1033.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399422    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1067,78,0
12    7510244    rs10844773    T    C    81.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313599    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
12    7525795    rs10845007    C    T    278.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544331    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:311,24,0
12    7525865    rs11053518    G    C    707.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544331    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:741,54,0
12    7551022    rs6488268    A    T    2354.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.08;MQ0=0;QD=35.68;SNPEFF_AMINO_ACID_CHANGE=L523M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7550860_7551180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313599    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2388,178,0
12    7551050    rs6488269    A    C    2176.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=58.98;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=V513;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7550860_7551180;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313599    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2210,169,0
12    7585247    rs58195891    T    C    866.34    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=74;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.273;QD=11.71;ReadPosRankSum=-2.753;SNPEFF_AMINO_ACID_CHANGE=G177;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7585012_7585332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313599    GT:AD:DP:GQ:PL    0/1:30,43:74:99:896,0,927
12    7585971    rs10845159    A    G    357.62    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.933;DB;DP=41;Dels=0.0;FS=1.639;HRun=0;HaplotypeScore=1.6316;MQ=59.44;MQ0=0;MQRankSum=-0.81;QD=8.72;ReadPosRankSum=0.168;SNPEFF_AMINO_ACID_CHANGE=Y148;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7585970_7586290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313599    GT:AD:DP:GQ:PL    0/1:26,15:41:99:388,0,805
12    7591681    rs139638620    G    A    1199.13    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.968;DB;DP=94;Dels=0.0;FS=2.987;HRun=0;HaplotypeScore=3.6009;MQ=51.81;MQ0=0;MQRankSum=-4.679;QD=12.76;ReadPosRankSum=0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313599    GT:AD:DP:GQ:PL    0/1:45,49:94:99:1229,0,1443
12    7592035    rs10772330    G    T    675.92    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.125;DB;DP=67;Dels=0.0;FS=0.949;HRun=3;HaplotypeScore=0.0;MQ=59.1;MQ0=0;MQRankSum=0.454;QD=10.09;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313599    GT:AD:DP:GQ:PL    0/1:40,27:67:99:706,0,1205
12    7592139    rs10772331    G    A    843.03    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.886;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.074;QD=15.91;ReadPosRankSum=0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313599    GT:AD:DP:GQ:PL    0/1:22,31:53:99:873,0,699
12    7596855    rs7954905    T    C    93.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.82;ReadPosRankSum=-1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543276    GT:AD:DP:GQ:PL    0/1:8,4:12:99:124,0,288
12    7635038    rs10734844    A    G    144.63    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=11.13;ReadPosRankSum=2.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538840    GT:AD:DP:GQ:PL    0/1:6,7:13:99:175,0,194
12    7635793    rs6488340    G    A    76.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.69;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538840    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,108
12    7638020    rs10743939    G    A    404.85    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.548;DB;DP=32;Dels=0.0;FS=2.222;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.699;QD=12.65;ReadPosRankSum=-0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359156    GT:AD:DP:GQ:PL    0/1:17,15:32:99:435,0,532
12    7649484    rs4883263    T    C    922.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.14;DB;DP=55;Dels=0.0;FS=1.124;HRun=0;HaplotypeScore=0.9999;MQ=59.58;MQ0=0;MQRankSum=0.486;QD=16.77;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=I330V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7649409_7649729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541972    GT:AD:DP:GQ:PL    0/1:25,30:55:99:952,0,735
12    7649653    rs4883264    T    C    607.54    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.608;DB;DP=54;Dels=0.0;FS=2.483;HRun=2;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=11.25;ReadPosRankSum=-1.457;SNPEFF_AMINO_ACID_CHANGE=G273;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7649409_7649729;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541972    GT:AD:DP:GQ:PL    0/1:31,22:54:99:638,0,922
12    7651924    rs6488359    G    A    116.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.7;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359156    GT:AD:DP:GQ:PL    0/1:3,4:7:98.79:147,0,99
12    7655137    rs3210140    A    G    64.50    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.21;ReadPosRankSum=1.3;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7655074_7655160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541972    GT:AD:DP:GQ:PL    0/1:4,3:7:94.49:94,0,148
12    7655278    rs11836971    T    A    52.46    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=8.953;HRun=1;HaplotypeScore=0.5784;MQ=58.43;MQ0=0;MQRankSum=0.0;QD=4.37;ReadPosRankSum=0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD163;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359156    GT:AD:DP:GQ:PL    0/1:9,3:12:82.45:82,0,307
12    7803562    rs10431308    C    A    3593.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229304    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3594,268,0
12    7803646    rs10431309    G    A    1181.95    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.628;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5759;MQ=60.0;MQ0=0;MQRankSum=-1.225;QD=14.07;ReadPosRankSum=0.879;SNPEFF_AMINO_ACID_CHANGE=Y178;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7803619_7803737;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229304    GT:AD:DP:GQ:PL    0/1:42,41:84:99:1212,0,1285
12    7805236    rs2302515    C    G    1246.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=36.67;SNPEFF_AMINO_ACID_CHANGE=M80I;SNPEFF_CODON_CHANGE=atG/atC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7805034_7805431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229304    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1280,93,0
12    7805467    rs2080127    C    T    1621.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.88;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229304    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1654,123,0
12    7805508    rs112046539    CTTTT    C    880.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=28;FS=0.0;HRun=7;HaplotypeScore=236.1077;IndelType=D;MQ=65.15;MQ0=0;MQRankSum=0.678;QD=31.43;ReadPosRankSum=-1.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229304    GT:AD:DP:GQ:PL    1/1:7,21:28:20.20:922,20,0
12    7807138    rs10845624    G    A    268.96    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=23;Dels=0.0;FS=14.287;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=11.69;ReadPosRankSum=-0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229304    GT:AD:DP:GQ:PL    0/1:12,11:23:99:299,0,418
12    7818444    rs7294364    C    A    1016.52    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.421;DB;DP=75;Dels=0.0;FS=3.241;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=0.144;QD=13.55;ReadPosRankSum=0.707;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229304    GT:AD:DP:GQ:PL    0/1:38,37:75:99:1047,0,1118
12    7842932    rs12819884    C    T    798.14    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.819;DB;DP=55;Dels=0.0;FS=7.38;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.044;QD=14.51;ReadPosRankSum=1.732;SNPEFF_AMINO_ACID_CHANGE=G213R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7842378_7843300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329913    GT:AD:DP:GQ:PL    0/1:25,30:55:99:828,0,657
12    7843373    rs3815479    C    T    219.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=15.65;ReadPosRankSum=2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329913    GT:AD:DP:GQ:PL    0/1:6,8:14:99:249,0,202
12    7843473    rs7957693    T    C    61.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.76;MQ0=0;QD=20.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329913    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:94,9,0
12    7843478    rs7976851    C    T    78.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.76;MQ0=0;QD=26.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329913    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
12    7847940    rs6488591    C    T    1278.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329913    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1311,102,0
12    7864460    rs1558534    A    T    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345088    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    7867847    rs2024320    G    C    1677.71    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.388;DB;DP=115;Dels=0.0;FS=1.56;HRun=1;HaplotypeScore=1.8835;MQ=58.41;MQ0=0;MQRankSum=0.285;QD=14.59;ReadPosRankSum=-0.026;SNPEFF_AMINO_ACID_CHANGE=E51Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7867779_7868023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345088    GT:AD:DP:GQ:PL    0/1:55,60:115:99:1708,0,1724
12    7868777    rs34619457    A    AT    971.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=7;HaplotypeScore=144.8011;IndelType=I;MQ=56.92;MQ0=1;QD=22.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345088    GT:AD:DP:GQ:PL    1/1:6,22:42:99:1013,112,0
12    7868865    rs34547953    C    CTT    506.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=12;HaplotypeScore=129.6024;IndelType=I;MQ=50.6;MQ0=2;QD=20.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345088    GT:AD:DP:GQ:PL    1/1:11,7:23:49.60:549,50,0
12    7869701    rs11055388    G    C    1508.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.32;MQ0=20;QD=19.1;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345088    GT:AD:DP:GQ:PL    1/1:0,79:79:99:1542,138,0
12    7883095    rs7134635    G    A    32.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354629    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:63,6,0
12    7922446    rs11055677    A    G    344.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.51;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.394;QD=15.67;ReadPosRankSum=0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOGNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382119    GT:AD:DP:GQ:PL    0/1:11,11:22:99:375,0,373
12    7942514    rs12816791    C    A    180.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=58.11;MQ0=0;MQRankSum=2.383;QD=18.03;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229307    GT:AD:DP:GQ:PL    0/1:4,6:10:99:210,0,136
12    7945559    rs4294629    T    C    2208.69    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=177;Dels=0.0;FS=2.777;HRun=2;HaplotypeScore=0.0;MQ=52.97;MQ0=0;MQRankSum=-6.374;QD=12.48;ReadPosRankSum=-0.878;SNPEFF_AMINO_ACID_CHANGE=P31;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7945546_7945808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541267    GT:AD:DP:GQ:PL    0/1:90,86:177:99:2239,0,2762
12    7945640    rs2889551    G    T    1198.66    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.267;DB;DP=128;Dels=0.0;FS=15.478;HRun=0;HaplotypeScore=0.6651;MQ=46.56;MQ0=0;MQRankSum=-6.89;QD=9.36;ReadPosRankSum=-0.831;SNPEFF_AMINO_ACID_CHANGE=K58N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7945546_7945808;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541267    GT:AD:DP:GQ:PL    0/1:77,51:128:99:1229,0,2404
12    7945670    rs4354764    G    A    848.13    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.591;DB;DP=95;Dels=0.0;FS=7.561;HRun=0;HaplotypeScore=1.9448;MQ=44.53;MQ0=0;MQRankSum=-4.352;QD=8.93;ReadPosRankSum=0.502;SNPEFF_AMINO_ACID_CHANGE=P68;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7945546_7945808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541267    GT:AD:DP:GQ:PL    0/1:59,36:95:99:878,0,1766
12    7945757    rs4438116    C    T    394.61    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.294;DB;DP=52;Dels=0.0;FS=2.66;HRun=0;HaplotypeScore=0.8941;MQ=41.78;MQ0=0;MQRankSum=0.86;QD=7.59;ReadPosRankSum=0.737;SNPEFF_AMINO_ACID_CHANGE=S121;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7945546_7945808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229307    GT:AD:DP:GQ:PL    0/1:35,17:52:99:425,0,921
12    7945829    rs4242903    G    C    1465.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=50.64;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229307    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1499,114,0
12    7945871    rs11831829    C    T    344.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.974;DB;DP=26;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=0.0;MQ=50.85;MQ0=0;MQRankSum=-0.974;QD=13.27;ReadPosRankSum=0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229307    GT:AD:DP:GQ:PL    0/1:13,13:26:99:375,0,440
12    7945916    rs34261320    G    A    86.99    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=54.78;MQ0=0;MQRankSum=0.312;QD=6.69;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229307    GT:AD:DP:GQ:PL    0/1:6,7:13:99:117,0,181
12    7945927    rs58791167    A    G    138.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7356;MQ=55.17;MQ0=0;MQRankSum=-0.336;QD=13.86;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229307    GT:AD:DP:GQ:PL    0/1:5,5:10:99:169,0,169
12    7947017    rs1860931    T    C    581.29    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.7;MQ0=0;MQRankSum=0.509;QD=20.04;ReadPosRankSum=-0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229307    GT:AD:DP:GQ:PL    0/1:12,17:29:99:611,0,370
12    7947304    rs4012939    T    C    866.62    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.076;DB;DP=95;Dels=0.0;FS=9.217;HRun=0;HaplotypeScore=0.0;MQ=45.28;MQ0=3;MQRankSum=-2.268;QD=9.12;ReadPosRankSum=1.852;SNPEFF_AMINO_ACID_CHANGE=L153;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7947275_7947404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541267    GT:AD:DP:GQ:PL    0/1:56,39:95:99:897,0,1572
12    7947571    rs4012937    C    T    33.65    MQFilter40;QDFilter2    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=158;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=7.83;MQ0=136;MQRankSum=-0.717;QD=0.21;ReadPosRankSum=1.877;SNPEFF_AMINO_ACID_CHANGE=A250;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7947323_7947691;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526286    GT:AD:DP:GQ:PL    0/1:121,37:158:63.64:64,0,263
12    7966958    rs10845981    C    T    939.53    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.179;DB;DP=139;Dels=0.0;FS=1.565;HRun=0;HaplotypeScore=0.9734;MQ=51.65;MQ0=4;MQRankSum=-7.026;QD=6.76;ReadPosRankSum=0.649;SNPEFF_AMINO_ACID_CHANGE=G147E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_7966125_7967130;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542505    GT:AD:DP:GQ:PL    0/1:84,55:139:99:970,0,2647
12    7967135    rs11055945    T    A    435.27    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.1;MQ0=0;MQRankSum=-2.036;QD=10.62;ReadPosRankSum=0.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    0/1:23,18:41:99:465,0,701
12    7970721    rs10845990    T    G    173.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
12    7972293    .    G    A    58.70    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.47;MQ0=10;MQRankSum=-0.72;QD=3.67;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    0/1:9,7:16:35.35:89,0,35
12    7980035    rs10846003    T    C    307.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.16;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535266    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:340,27,0
12    7981626    rs4402376    T    C    61.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=20.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535266    GT:AD:DP:GQ:PL    1/1:0,3:3:9:93,9,0
12    7984017    rs7966554    C    A    198.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535383    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:232,18,0
12    7984447    rs10772787    G    A    447.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535587    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:480,36,0
12    7985460    rs17728008    T    C    236.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.208;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.177;QD=13.13;ReadPosRankSum=-0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    0/1:9,9:18:99:266,0,322
12    8047901    rs7306832    T    C    246.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525030    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
12    8048013    rs2377236    A    G    3461.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.62;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525030    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3461,268,0
12    8049561    rs11612697    C    G    758.47    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=67;Dels=0.0;FS=1.605;HRun=0;HaplotypeScore=1.8656;MQ=47.28;MQ0=0;MQRankSum=-1.684;QD=11.32;ReadPosRankSum=-0.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533269    GT:AD:DP:GQ:PL    0/1:39,28:67:99:788,0,1233
12    8049720    rs12368621    G    A    74.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.83;MQ0=0;MQRankSum=-0.72;QD=12.38;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533269    GT:AD:DP:GQ:PL    0/1:2,4:6:66.19:104,0,66
12    8051371    rs61925372    G    C    1896.60    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.137;DB;DP=166;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1889;MQ=20.91;MQ0=57;MQRankSum=0.201;QD=11.43;ReadPosRankSum=-0.669;SNPEFF_AMINO_ACID_CHANGE=E191Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8051131_8052674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOGP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530989    GT:AD:DP:GQ:PL    1/1:29,137:166:99:1930,142,0
12    8074192    rs25684    G    A    1401.57    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=70;Dels=0.0;FS=10.866;HRun=0;HaplotypeScore=2.7882;MQ=58.0;MQ0=2;MQRankSum=1.772;QD=20.02;ReadPosRankSum=-1.223;SNPEFF_AMINO_ACID_CHANGE=T362;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8073978_8074227;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540978    GT:AD:DP:GQ:PL    0/1:27,43:70:99:1432,0,649
12    8075286    rs9668489    C    T    355.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490763    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:389,30,0
12    8075685    rs741361    A    G    159.03    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.56;QD=7.23;ReadPosRankSum=0.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490763    GT:AD:DP:GQ:PL    0/1:15,7:22:99:189,0,523
12    8082367    rs17847967    T    C    207.43    PASS    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=0.682;DB;DP=103;Dels=0.0;FS=28.882;HRun=1;HaplotypeScore=0.9867;MQ=48.46;MQ0=0;MQRankSum=-3.439;QD=2.01;ReadPosRankSum=-0.009;SNPEFF_AMINO_ACID_CHANGE=L184;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8082280_8082467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540978    GT:AD:DP:GQ:PL    0/1:86,17:103:99:237,0,2731
12    8085547    rs2541279    T    C    498.98    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=3.673;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.339;MQ=58.95;MQ0=0;MQRankSum=-0.79;QD=7.56;ReadPosRankSum=0.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541671    GT:AD:DP:GQ:PL    0/1:41,23:66:99:529,0,885
12    8088766    rs2541281    T    C    503.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=58.45;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:537,42,0
12    8090271    rs11056574    C    T    171.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=13.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    1/1:0,11:13:20.98:205,21,0
12    8090317    rs34500467    CAA    C    46.76    QDFilter2    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.694;DB;DP=27;FS=0.0;HRun=18;HaplotypeScore=257.3742;IndelType=D;MQ=50.04;MQ0=0;MQRankSum=2.694;QD=1.73;ReadPosRankSum=2.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    0/1:18,5:27:85.79:86,0,274
12    8090505    rs12321738    C    G    379.69    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=55.21;MQ0=0;MQRankSum=-0.807;QD=23.73;ReadPosRankSum=0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    0/1:3,13:16:78.79:410,0,79
12    8090839    rs7309332    T    C    1023.92    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.687;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.348;QD=24.38;ReadPosRankSum=0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545179    GT:AD:DP:GQ:PL    0/1:12,30:42:99:1054,0,336
12    8196445    rs2277414    T    G    2045.73    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.94;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=59.34;MQ0=0;MQRankSum=-0.222;QD=16.11;ReadPosRankSum=-0.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162391    GT:AD:DP:GQ:PL    0/1:61,66:127:99:2076,0,2021
12    8203273    rs17801353    T    G    528.41    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=37;Dels=0.0;FS=2.2;HRun=0;HaplotypeScore=0.9998;MQ=59.5;MQ0=0;MQRankSum=0.427;QD=14.28;ReadPosRankSum=-0.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428177    GT:AD:DP:GQ:PL    0/1:18,19:37:99:558,0,600
12    8203400    rs61922169    G    C    31.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.19;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXJ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428177    GT:AD:DP:GQ:PL    0/1:4,2:6:61.15:61,0,146
12    8276432    rs7295783    C    T    544.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_8276228_8276556;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229332    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:578,42,0
12    8277960    rs11043474    C    T    81.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.42;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229332    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:112,0,31
12    8278181    rs2024301    A    T    753.55    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.524;DB;DP=54;Dels=0.0;FS=1.131;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=2.045;QD=13.95;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=H25L;SNPEFF_CODON_CHANGE=cAc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8278157_8278273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546339    GT:AD:DP:GQ:PL    0/1:29,25:54:99:784,0,846
12    8286762    rs7315526    G    C    1637.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229332    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1671,138,0
12    8287048    rs11043498    C    T    1233.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.92;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229332    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1267,99,0
12    8288026    rs12099836    T    C    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229332    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
12    8288098    rs10840746    T    C    553.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229332    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:586,45,0
12    8289226    rs4322490    G    A    561.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=29.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229332    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:595,45,0
12    8289300    rs4573763    T    C    2364.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229332    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2397,187,0
12    8327888    rs184908955    A    G    286.72    MQFilter40;QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.385;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.2772;MQ=16.64;MQ0=99;MQRankSum=-0.211;QD=1.15;ReadPosRankSum=0.271;SNPEFF_AMINO_ACID_CHANGE=E68;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8327824_8327919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359286    GT:AD:DP:GQ:PL    0/1:192,57:250:99:317,0,1832
12    8328754    rs138772873    C    T    1087.33    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.266;DB;DP=82;Dels=0.0;FS=1.821;HRun=1;HaplotypeScore=1.811;MQ=51.77;MQ0=0;MQRankSum=0.584;QD=13.26;ReadPosRankSum=-0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF705A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402465    GT:AD:DP:GQ:PL    0/1:46,36:82:99:1117,0,1485
12    8372553    rs4883085    C    T    193.37    MQFilter40    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=2.934;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.57;MQ0=3;MQRankSum=0.845;QD=4.6;ReadPosRankSum=1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    0/1:32,10:42:99:223,0,500
12    8372757    rs4883086    A    C    69.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=55.83;MQ0=0;MQRankSum=-0.937;QD=9.93;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,139
12    8374238    rs3825299    T    G    407.11    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.688;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.2;MQ0=0;MQRankSum=0.326;QD=19.39;ReadPosRankSum=-0.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    0/1:8,13:21:99:437,0,253
12    8374770    rs9668474    G    A    1376.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=50.12;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=T348I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8373856_8375380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1409,114,0
12    8374781    rs71265055    C    CACG    1965.12    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.534;DB;DP=49;FS=4.372;HRun=0;HaplotypeScore=403.4971;IndelType=I;MQ=48.11;MQ0=0;MQRankSum=-3.556;QD=38.53;ReadPosRankSum=1.455;SNPEFF_AMINO_ACID_CHANGE=T344TS;SNPEFF_CODON_CHANGE=acg/aCGTcg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_12_8373856_8375380;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    0/1:23,28:49:99:2004,0,816
12    8374812    rs17855656    G    A    491.49    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=62;Dels=0.0;FS=7.243;HRun=0;HaplotypeScore=12.3592;MQ=41.89;MQ0=5;MQRankSum=2.139;QD=7.93;ReadPosRankSum=2.193;SNPEFF_AMINO_ACID_CHANGE=P334L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8373856_8375380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    0/1:39,23:62:99:521,0,761
12    8375048    rs17857270    G    T    424.18    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.191;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=50.71;MQ0=1;MQRankSum=-7.461;QD=4.08;ReadPosRankSum=-0.031;SNPEFF_AMINO_ACID_CHANGE=S255R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8373856_8375380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    0/1:76,28:104:99:454,0,2422
12    8375052    rs17857269    A    G    467.22    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=3.731;DB;DP=107;Dels=0.0;FS=3.098;HRun=1;HaplotypeScore=0.734;MQ=51.22;MQ0=1;MQRankSum=-7.413;QD=4.37;ReadPosRankSum=0.391;SNPEFF_AMINO_ACID_CHANGE=V254A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8373856_8375380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    0/1:79,27:107:99:497,0,2363
12    8375112    rs9668582    G    T    908.22    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=3.674;DB;DP=126;Dels=0.0;FS=1.59;HRun=0;HaplotypeScore=1.8808;MQ=53.02;MQ0=0;MQRankSum=-4.658;QD=7.21;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=A234E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8373856_8375380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    0/1:88,38:126:99:938,0,2509
12    8375427    rs9300121    C    T    1344.14    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.365;DB;DP=81;Dels=0.0;FS=0.909;HRun=0;HaplotypeScore=0.0;MQ=53.28;MQ0=0;MQRankSum=-0.65;QD=16.59;ReadPosRankSum=-0.524;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    0/1:36,45:81:99:1374,0,999
12    8375818    rs9738367    G    A    246.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.52;MQ0=0;QD=22.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    1/1:0,11:11:27.02:280,27,0
12    8375921    rs9738371    G    C    317.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=23.68;MQ0=2;QD=8.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    1/1:0,39:39:41.90:350,42,0
12    8375922    rs9737975    T    C    288.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=23.83;MQ0=2;QD=7.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    1/1:0,39:40:38.91:322,39,0
12    8376110    rs9738115    T    C    3216.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=48.16;MQ0=1;QD=29.51;SNPEFF_AMINO_ACID_CHANGE=R123G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8376045_8376153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3250,265,0
12    8376181    rs7139128    C    G    1901.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.09;MQ0=0;MQRankSum=-1.017;QD=30.19;ReadPosRankSum=0.302;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    1/1:1,62:63:99:1935,127,0
12    8376205    rs7138214    G    A    1554.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.25;MQ0=2;QD=29.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1588,126,0
12    8376398    rs9739812    C    T    74.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.406;QD=12.39;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,103
12    8376470    rs7310126    A    G    612.98    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.04;MQ0=0;MQRankSum=1.089;QD=22.7;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    0/1:8,19:27:99:643,0,241
12    8376535    rs9739820    C    T    1345.41    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.488;DB;DP=71;Dels=0.0;FS=5.411;HRun=0;HaplotypeScore=0.9973;MQ=52.31;MQ0=1;MQRankSum=-1.297;QD=18.95;ReadPosRankSum=0.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442295    GT:AD:DP:GQ:PL    0/1:27,44:71:99:1375,0,788
12    8377439    rs143933471    TG    T    119.24    PASS    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=4.523;DB;DP=46;FS=0.0;HRun=5;HaplotypeScore=142.7447;IndelType=D;MQ=53.31;MQ0=0;MQRankSum=1.567;QD=2.59;ReadPosRankSum=2.224;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_12_8377306_8377484;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    0/1:37,9:46:99:158,0,1263
12    8383049    rs2965688    C    A    70.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.98;MQ0=0;QD=11.78;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    1/1:0,6:6:9.01:103,9,0
12    8383115    rs2953216    G    C    768.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.55;MQ0=2;QD=25.6;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    1/1:0,30:30:63.16:801,63,0
12    8383189    rs2970165    A    G    1073.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.48;MQ0=14;QD=18.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    1/1:0,59:59:96.27:1107,96,0
12    8383295    rs2953215    C    A    689.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.33;MQ0=0;QD=31.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:723,54,0
12    8384186    rs7136053    A    G    615.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.89;MQ0=0;QD=30.78;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM90A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307435    GT:AD:DP:GQ:PL    1/1:0,20:20:54.12:649,54,0
12    8386701    rs11612306    A    C    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.999;MQ=41.99;MQ0=0;QD=10.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:72,6,0
12    8386713    rs2968740    A    G    103.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.99;MQ0=0;QD=25.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
12    8386857    rs2968741    G    C    2842.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.6425;MQ=52.7;MQ0=0;MQRankSum=-0.168;QD=29.92;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:1,94:95:99:2875,204,0
12    8386863    rs2965690    T    G    2779.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.875;DB;DP=103;Dels=0.01;FS=0.0;HRun=3;HaplotypeScore=2.6493;MQ=51.28;MQ0=0;MQRankSum=0.051;QD=26.73;ReadPosRankSum=0.943;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:1,101:103:99:2813,183,0
12    8386871    rs2968742    C    G    2973.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.079;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8328;MQ=50.81;MQ0=0;MQRankSum=-0.27;QD=26.55;ReadPosRankSum=1.383;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=FAM86FP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000338711    GT:AD:DP:GQ:PL    1/1:1,111:112:99:3006,201,0
12    8386878    rs10841037    C    T    3053.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=50.73;MQ0=0;QD=28.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3087,235,0
12    8387754    rs7134057    C    T    1291.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.16;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1324,108,0
12    8388242    rs2953203    C    T    5354.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DB;DP=165;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=47.69;MQ0=0;MQRankSum=-0.377;QD=32.45;ReadPosRankSum=-0.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:1,164:165:99:5355,448,0
12    8388349    rs7973130    A    G    6321.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=212;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.2342;MQ=46.29;MQ0=8;QD=29.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:2,210:212:99:6322,502,0
12    8388425    rs11613760    T    C    2905.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.68;MQ0=15;QD=25.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:4,110:114:99:2939,265,0
12    8388505    rs55828837    C    T    1132.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6648;MQ=55.9;MQ0=0;MQRankSum=0.683;QD=33.31;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:1,33:34:53.65:1165,54,0
12    8388616    .    G    A    32.79    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=16.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ALG1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437882    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
12    8391144    rs11044208    C    G    780.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.86;MQ0=2;QD=28.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-266K4.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399866    GT:AD:DP:GQ:PL    1/1:0,27:27:69.18:814,69,0
12    8391162    rs11044209    T    C    1051.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.81;MQ0=5;QD=27.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-266K4.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399866    GT:AD:DP:GQ:PL    1/1:2,36:38:90.24:1085,90,0
12    8430442    rs9668199    A    G    32.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.83;MQ0=0;QD=10.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-266K4.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541031    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:64,6,0
12    8519452    rs9706294    T    C    7463.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1904;MQ=38.43;MQ0=5;QD=29.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092865.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408177    GT:AD:DP:GQ:PL    1/1:1,249:250:99:7463,614,0
12    8519551    .    CCCA    C    467.63    PASS    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=4.587;DP=119;DS;FS=0.0;HRun=0;HaplotypeScore=471.077;IndelType=D;MQ=47.85;MQ0=0;MQRankSum=-0.328;QD=3.74;ReadPosRankSum=0.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC092865.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408177    GT:AD:DP:GQ:PL    0/1:106,19:119:99:507,0,1765
12    8580736    rs61276801    GAA    G    56.61    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=10;FS=0.0;HRun=17;HaplotypeScore=118.3231;IndelType=D;MQ=48.81;MQ0=0;MQRankSum=-1.495;QD=5.66;ReadPosRankSum=-0.198;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-113C12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439409    GT:AD:DP:GQ:PL    0/1:3,6:10:11.09:95,0,11
12    8581126    rs181853158    C    T    1067.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.86;MQ0=0;QD=34.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-113C12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439409    GT:AD:DP:GQ:PL    1/1:0,31:31:87.23:1101,87,0
12    8581130    rs186946435    C    T    1051.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.86;MQ0=0;QD=33.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-113C12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439409    GT:AD:DP:GQ:PL    1/1:0,31:31:84.23:1084,84,0
12    8581251    rs191364522    G    A    152.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=36.39;MQ0=0;QD=21.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-113C12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439409    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:186,18,0
12    8608502    rs4628756    T    A    80.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.03;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
12    8608583    rs4528410    A    G    774.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_8608522_8608738;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:807,60,0
12    8610268    rs4435079    C    T    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    8610291    rs4255605    T    C    126.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    8610317    rs4623978    A    G    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
12    8610352    rs4402377    G    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    8612336    rs10770736    G    C    922.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,31:31:81.22:955,81,0
12    8612481    rs12300621    A    G    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    8612484    rs12302015    T    C    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
12    8613412    rs10770740    A    C    695.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,19:20:54.18:728,54,0
12    8617976    rs7302011    A    T    407.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:440,36,0
12    8617982    rs7315873    G    A    470.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:503,36,0
12    8628996    rs142003978    C    A    270.96    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.383;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.529;QD=7.74;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382073    GT:AD:DP:GQ:PL    0/1:25,10:35:99:301,0,905
12    8666118    rs11045983    A    T    75.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.77;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382064    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:105,0,28
12    8666378    rs11045985    C    A    2548.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=59.39;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299665    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2581,193,0
12    8667897    rs4304840    A    G    1999.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=30.77;SNPEFF_AMINO_ACID_CHANGE=S32G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8667832_8667924;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299665    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2033,150,0
12    8670978    rs74059866    A    G    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299665    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
12    8671909    rs12309351    C    T    183.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.32;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299665    GT:AD:DP:GQ:PL    0/1:4,6:10:99:213,0,134
12    8673699    rs12321431    T    C    672.71    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.509;DB;DP=53;Dels=0.0;FS=1.455;HRun=1;HaplotypeScore=4.6062;MQ=58.68;MQ0=0;MQRankSum=0.259;QD=12.69;ReadPosRankSum=0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382064    GT:AD:DP:GQ:PL    0/1:29,24:53:99:703,0,933
12    8673984    rs7307664    G    C    182.64    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.32;MQ0=0;MQRankSum=-0.914;QD=10.74;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382064    GT:AD:DP:GQ:PL    0/1:9,8:17:99:213,0,303
12    8673989    rs7138828    A    G    183.35    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.742;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=5.9927;MQ=52.81;MQ0=0;MQRankSum=-1.78;QD=10.79;ReadPosRankSum=-1.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382064    GT:AD:DP:GQ:PL    0/1:8,9:17:99:213,0,270
12    8673995    rs11442181    C    CT    148.38    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=14;FS=0.0;HRun=6;HaplotypeScore=90.8957;IndelType=I;MQ=51.13;MQ0=0;MQRankSum=-2.074;QD=10.6;ReadPosRankSum=-0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382064    GT:AD:DP:GQ:PL    0/1:8,6:14:99:187,0,175
12    8688999    rs4242896    A    C    72.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=12.13;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446809    GT:AD:DP:GQ:PL    0/1:2,4:6:67.19:103,0,67
12    8693240    rs5014225    C    A    1128.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.56;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299663    GT:AD:DP:GQ:PL    1/1:0,34:34:96.28:1161,96,0
12    8693245    rs5796313    A    AC    1650.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=41;FS=0.0;HRun=6;HaplotypeScore=274.7947;IndelType=I;MQ=62.27;MQ0=0;MQRankSum=0.433;QD=40.26;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299663    GT:AD:DP:GQ:PL    1/1:2,39:41:99:1693,116,0
12    8693333    rs4620776    G    A    3417.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299663    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3417,268,0
12    8693418    rs11834597    T    C    1044.40    HaplotypeScoreFilter13    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.756;DB;DP=79;Dels=0.0;FS=2.457;HRun=0;HaplotypeScore=20.8831;MQ=59.0;MQ0=0;MQRankSum=0.515;QD=13.22;ReadPosRankSum=0.861;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446809    GT:AD:DP:GQ:PL    0/1:39,39:79:99:1074,0,1148
12    8693419    rs142522658    T    TTCTC    1462.66    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.98;DB;DP=77;FS=0.0;HRun=0;HaplotypeScore=522.1993;IndelType=I;MQ=58.98;MQ0=0;MQRankSum=0.231;QD=19.0;ReadPosRankSum=1.397;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446809    GT:AD:DP:GQ:PL    0/1:57,20:77:99:1502,0,1182
12    8693521    rs73049972    G    T    199.11    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.791;QD=15.32;ReadPosRankSum=-0.312;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446457    GT:AD:DP:GQ:PL    0/1:6,7:13:99:229,0,199
12    8756791    rs11046349    T    G    287.77    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=17.99;ReadPosRankSum=-1.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AICDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537228    GT:AD:DP:GQ:PL    0/1:6,10:16:99:318,0,206
12    8757522    rs5796316    C    CA    1787.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;DB;DP=113;FS=0.0;HRun=13;HaplotypeScore=699.1728;IndelType=I;MQ=55.07;MQ0=0;MQRankSum=-0.409;QD=15.82;ReadPosRankSum=-0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AICDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229335    GT:AD:DP:GQ:PL    1/1:37,73:113:99:1830,105,0
12    8759445    rs2518144    C    T    264.39    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.728;DB;DP=32;Dels=0.0;FS=9.755;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.142;QD=8.26;ReadPosRankSum=0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AICDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229335    GT:AD:DP:GQ:PL    0/1:22,10:32:99:294,0,619
12    8765447    rs1345004    T    C    729.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AICDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545576    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:763,57,0
12    8802008    rs2289382    G    A    256.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=21.39;ReadPosRankSum=0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534833    GT:AD:DP:GQ:PL    0/1:4,8:12:99:287,0,125
12    8802962    rs2289385    C    A    171.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534833    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
12    8803202    rs67112126    CA    C    264.51    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.02;DB;DP=22;FS=0.0;HRun=7;HaplotypeScore=56.9996;IndelType=D;MQ=59.44;MQ0=0;MQRankSum=0.675;QD=12.02;ReadPosRankSum=0.391;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537128    GT:AD:DP:GQ:PL    0/1:10,12:22:99:304,0,273
12    8807195    rs17802192    T    C    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359478    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,73
12    8807982    rs71451975    A    AT    174.91    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=30;FS=5.63;HRun=10;HaplotypeScore=109.918;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=-0.025;QD=5.83;ReadPosRankSum=0.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359478    GT:AD:DP:GQ:PL    0/1:20,10:30:99:214,0,335
12    8808006    rs11046589    T    C    295.04    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DB;DP=32;Dels=0.0;FS=6.284;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.757;QD=9.22;ReadPosRankSum=1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359478    GT:AD:DP:GQ:PL    0/1:20,12:32:99:325,0,578
12    8808362    rs151087918    CAAACA    C    1918.40    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=6.653;DB;DP=70;FS=1.032;HRun=0;HaplotypeScore=378.1136;IndelType=D;MQ=57.53;MQ0=0;MQRankSum=0.068;QD=27.41;ReadPosRankSum=0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359478    GT:AD:DP:GQ:PL    0/1:34,36:70:99:1957,0,2502
12    8808630    rs35365089    C    T    98.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359478    GT:AD:DP:GQ:PL    0/1:2,4:6:65.94:129,0,66
12    8926011    rs2969089    T    C    2842.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6545;MQ=59.44;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=D264;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_8925917_8929787;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RIMKLB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357529    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2876,211,0
12    8982250    rs55978753    CAA    C    74.54    QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=1.411;DB;DP=49;FS=12.231;HRun=22;HaplotypeScore=286.2111;IndelType=D;MQ=50.45;MQ0=0;MQRankSum=0.847;QD=1.52;ReadPosRankSum=1.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    0/1:33,7:49:99:114,0,324
12    8988777    rs1894814    A    G    344.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537546    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:377,27,0
12    8989916    rs11047510    A    G    289.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537546    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:322,27,0
12    8990813    rs10743504    A    G    831.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537546    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:865,63,0
12    8991246    rs10734734    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.23;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537546    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    8991970    rs7304994    G    A    81.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537546    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
12    8994212    rs1468695    T    C    341.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:375,30,0
12    8995694    rs7307991    A    G    452.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.377;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=13.3;ReadPosRankSum=-0.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    0/1:17,17:34:99:482,0,519
12    8995966    rs7136813    G    A    497.74    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.549;QD=16.59;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    0/1:13,17:30:99:528,0,372
12    9004512    rs1860927    G    A    1895.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.77;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=P298;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9004380_9004608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539547    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1929,144,0
12    9004667    rs4882965    G    C    1557.24    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.226;DB;DP=94;Dels=0.0;FS=0.937;HRun=0;HaplotypeScore=1.8154;MQ=59.75;MQ0=0;MQRankSum=-0.516;QD=16.57;ReadPosRankSum=-0.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540049    GT:AD:DP:GQ:PL    0/1:45,49:94:99:1587,0,1457
12    9004892    rs1860926    C    A    6499.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.87;MQ0=0;QD=36.51;SNPEFF_AMINO_ACID_CHANGE=D359E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9004806_9004932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539547    GT:AD:DP:GQ:PL    1/1:0,178:178:99:6499,482,0
12    9008318    rs1468711    G    C    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.48;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,110
12    9013755    rs1860967    C    T    1863.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.939;DB;DP=120;Dels=0.0;FS=4.476;HRun=0;HaplotypeScore=1.4972;MQ=59.62;MQ0=0;MQRankSum=0.218;QD=15.53;ReadPosRankSum=-1.047;SNPEFF_AMINO_ACID_CHANGE=R1122W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9013731_9013893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    0/1:60,60:120:99:1893,0,1574
12    9016573    rs10219561    A    G    1245.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=58.41;MQ0=0;QD=28.32;SNPEFF_AMINO_ACID_CHANGE=H1229R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9016390_9016604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    1/1:0,44:44:93.30:1279,93,0
12    9016665    rs17802489    G    C    97.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.536;QD=8.13;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    0/1:8,4:12:99:128,0,226
12    9020489    rs7308811    A    G    1622.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_AMINO_ACID_CHANGE=M1257V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9020438_9020653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1656,132,0
12    9020912    rs1476910    A    G    4007.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.37;MQ0=0;QD=31.81;SNPEFF_AMINO_ACID_CHANGE=Q1340;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9020826_9020953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    1/1:0,126:126:99:4008,298,0
12    9021053    rs5796325    C    CGTGT    2132.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.644;DB;DP=54;FS=3.869;HRun=0;HaplotypeScore=264.7748;IndelType=I;MQ=55.24;MQ0=1;MQRankSum=0.4;QD=38.78;ReadPosRankSum=-0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    1/1:18,29:54:92.21:2175,92,0
12    9021256    rs12816475    C    T    277.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=25;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.9665;MQ=58.31;MQ0=0;MQRankSum=0.028;QD=11.1;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    0/1:15,10:25:99:308,0,480
12    9021316    rs10664353    T    TAC    193.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=29.5586;IndelType=I;MQ=60.0;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2ML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299698    GT:AD:DP:GQ:PL    1/1:2,5:7:15.05:235,15,0
12    9070366    rs4883198    T    A    1017.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=L31;SNPEFF_CODON_CHANGE=ctT/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9070226_9070387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251757    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1050,78,0
12    9070578    rs4883199    T    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251757    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
12    9074259    rs1805741    C    T    1341.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.88;MQ0=2;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=P123;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9074197_9074346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251757    GT:AD:DP:GQ:PL    1/1:2,38:40:99:1374,108,0
12    9082855    rs1805778    A    G    83.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251757    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
12    9083336    rs1805777    A    G    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_AMINO_ACID_CHANGE=R261;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9083031_9083523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433083    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
12    9086683    rs1805735    A    T    1415.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.056;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=53.78;MQ0=0;MQRankSum=0.718;QD=34.53;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433847    GT:AD:DP:GQ:PL    1/1:1,40:41:78.80:1449,79,0
12    9086898    rs1049925    A    G    3653.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=130;Dels=0.0;FS=7.495;HRun=0;HaplotypeScore=0.0;MQ=49.55;MQ0=1;MQRankSum=2.905;QD=28.1;ReadPosRankSum=0.721;SNPEFF_AMINO_ACID_CHANGE=T299A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9086863_9087074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536844    GT:AD:DP:GQ:PL    1/1:13,117:130:4.64:3653,5,0
12    9087906    rs113120861    ATAG    A    3225.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.0;HRun=0;HaplotypeScore=320.7818;IndelType=D;MQ=56.01;MQ0=0;QD=43.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433847    GT:AD:DP:GQ:PL    1/1:6,68:74:99:3267,202,0
12    9089345    rs112476642    T    TG    299.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=5;HaplotypeScore=22.6389;IndelType=I;MQ=53.67;MQ0=0;QD=33.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=M6PR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000000412    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:342,27,0
12    9094548    rs1805765    A    G    748.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=26.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=M6PR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540837    GT:AD:DP:GQ:PL    1/1:0,28:28:63.20:782,63,0
12    9097933    rs1805725    C    A    630.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=M6PR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543159    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:663,51,0
12    9142297    rs1805723    T    C    1274.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.64;SNPEFF_AMINO_ACID_CHANGE=Y22;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9142217_9142313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266551    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1307,102,0
12    9145056    rs1805722    T    C    266.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541957    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:300,27,0
12    9147569    rs1805721    G    A    283.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541957    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
12    9248233    rs226405    T    C    4082.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8899;MQ=51.13;MQ0=0;QD=30.47;SNPEFF_AMINO_ACID_CHANGE=N639D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9248135_9248296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2M;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318602    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4083,340,0
12    9248332    rs55933766    T    C    1117.16    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=117.6093;MQ=41.63;MQ0=0;MQRankSum=0.421;QD=12.01;ReadPosRankSum=-1.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472360    GT:AD:DP:GQ:PL    1/1:48,45:93:93.27:1150,93,0
12    9253894    rs226397    C    T    754.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318602    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:788,57,0
12    9258821    rs12427063    A    G    4029.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.155;MQ=59.61;MQ0=0;QD=34.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404455    GT:AD:DP:GQ:PL    1/1:0,118:118:99:4030,313,0
12    9305473    rs10771357    T    C    1800.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=Q1142;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9305420_9305547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381997    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1833,138,0
12    9307373    rs2377741    T    G    987.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_AMINO_ACID_CHANGE=T1205P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9307212_9307435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    1/1:0,32:32:84.23:1020,84,0
12    9310008    rs10842982    T    C    1152.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7675;MQ=59.34;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539983    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1186,102,0
12    9310151    rs3759276    C    G    160.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539983    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
12    9310565    rs4882981    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539983    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
12    9310576    rs63584063    T    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539983    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    9310959    rs7298673    C    T    2341.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539983    GT:AD:DP:GQ:PL    1/1:0,69:70:99:2374,184,0
12    9311265    rs3741850    A    C    267.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539983    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:300,24,0
12    9313169    rs67966020    CAG    C    702.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=57.1647;IndelType=D;MQ=61.26;MQ0=0;QD=41.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540995    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:744,51,0
12    9315209    rs10771381    A    G    384.57    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.707;DB;DP=48;Dels=0.0;FS=1.234;HRun=1;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-0.819;QD=8.01;ReadPosRankSum=-1.471;SNPEFF_AMINO_ACID_CHANGE=S710;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9315193_9315244;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381997    GT:AD:DP:GQ:PL    0/1:31,17:48:99:415,0,1006
12    9316773    rs3213831    T    C    794.49    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.657;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8997;MQ=59.69;MQ0=0;MQRankSum=0.855;QD=10.74;ReadPosRankSum=-2.662;SNPEFF_AMINO_ACID_CHANGE=N857S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9316729_9316855;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    0/1:43,31:74:99:824,0,1342
12    9316907    rs1863839    C    T    344.16    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=16.39;ReadPosRankSum=1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546116    GT:AD:DP:GQ:PL    0/1:10,11:21:99:374,0,293
12    9317784    rs2277413    A    G    1202.93    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=115;Dels=0.0;FS=2.558;HRun=1;HaplotypeScore=5.8734;MQ=47.9;MQ0=7;MQRankSum=-4.13;QD=10.46;ReadPosRankSum=0.048;SNPEFF_AMINO_ACID_CHANGE=V682A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9317735_9317963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381997    GT:AD:DP:GQ:PL    0/1:60,53:115:99:1233,0,1601
12    9317885    rs2277412    G    A    1367.31    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=97;Dels=0.0;FS=6.998;HRun=0;HaplotypeScore=2.2433;MQ=43.47;MQ0=5;MQRankSum=-4.178;QD=14.1;ReadPosRankSum=-1.918;SNPEFF_AMINO_ACID_CHANGE=S648;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9317735_9317963;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381997    GT:AD:DP:GQ:PL    0/1:41,56:97:99:1397,0,1112
12    9321267    rs7964970    C    T    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
12    9321907    rs10771386    G    C    395.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:428,33,0
12    9333417    rs12308213    G    A    90.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:123,12,0
12    9333749    rs919209    G    A    216.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=14;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=15.43;ReadPosRankSum=0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    0/1:7,7:14:99:246,0,241
12    9334728    rs3832849    G    GAGTGAGACAAAATGGTCATA    781.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=101.5832;IndelType=I;MQ=48.88;MQ0=0;QD=71.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    1/1:3,8:11:27.09:824,27,0
12    9344878    rs2075394    A    G    277.26    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.373;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.669;QD=13.2;ReadPosRankSum=-1.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    0/1:11,10:21:99:307,0,340
12    9345273    rs10771407    A    G    2022.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=G308;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9345108_9345335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381997    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2055,156,0
12    9345408    rs2075395    A    G    174.42    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=13.42;ReadPosRankSum=-1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    0/1:7,6:13:99:204,0,242
12    9346792    rs12230214    G    C    805.34    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=0.401;DB;DP=51;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=0.9995;MQ=59.63;MQ0=0;MQRankSum=0.518;QD=15.79;ReadPosRankSum=-0.713;SNPEFF_AMINO_ACID_CHANGE=L248V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9346673_9346834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381997    GT:AD:DP:GQ:PL    0/1:23,28:51:99:835,0,690
12    9349370    rs11049396    C    CT    410.79    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.877;DB;DP=46;FS=7.134;HRun=9;HaplotypeScore=106.5796;IndelType=I;MQ=60.7;MQ0=0;MQRankSum=1.85;QD=8.93;ReadPosRankSum=-1.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    0/1:30,16:46:99:450,0,433
12    9352908    rs6487668    C    A    513.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:547,42,0
12    9353828    rs3759275    A    T    269.77    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.217;DB;DP=25;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.779;QD=10.79;ReadPosRankSum=1.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    0/1:14,11:25:99:300,0,512
12    9353875    rs3759274    T    C    548.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;MQRankSum=1.391;QD=13.7;ReadPosRankSum=-0.773;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PZP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261336    GT:AD:DP:GQ:PL    0/1:20,20:40:99:578,0,657
12    9446977    rs3874129    G    C    53.38    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.2;MQ0=2;MQRankSum=0.727;QD=8.9;ReadPosRankSum=-0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:3,3:6:15.65:83,0,16
12    9447396    .    C    A    69.45    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.739;DP=30;Dels=0.0;FS=11.558;HRun=0;HaplotypeScore=0.8321;MQ=30.98;MQ0=3;MQRankSum=-1.798;QD=2.32;ReadPosRankSum=0.028;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:20,10:30:99:99,0,499
12    9450357    .    A    G    496.17    MQFilter40    AC=2;AF=1.00;AN=2;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.61;MQ0=3;QD=26.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:529,48,0
12    9451370    .    T    C    221.83    MQFilter40    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=2.185;DP=61;Dels=0.0;FS=2.658;HRun=0;HaplotypeScore=0.0;MQ=27.64;MQ0=7;MQRankSum=-2.107;QD=3.64;ReadPosRankSum=0.293;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:38,23:61:99:252,0,784
12    9451397    rs74390404    G    A    370.75    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.895;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=28.78;MQ0=12;MQRankSum=-3.159;QD=4.58;ReadPosRankSum=0.689;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:45,36:81:99:401,0,877
12    9453726    rs61917369    G    A    58.45    MQFilter40    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.62;MQ0=1;MQRankSum=1.38;QD=8.35;ReadPosRankSum=0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:3,4:7:15.64:88,0,16
12    9453743    rs28415351    C    A    157.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=23.81;MQ0=1;QD=15.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    1/1:0,6:10:18.04:191,18,0
12    9453864    rs61917370    A    G    77.13    MQFilter40    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=24;Dels=0.0;FS=2.933;HRun=2;HaplotypeScore=0.0;MQ=36.32;MQ0=7;MQRankSum=-2.764;QD=3.21;ReadPosRankSum=1.759;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:11,13:24:99:107,0,313
12    9455342    rs80134739    A    G    444.92    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.251;DB;DP=30;Dels=0.0;FS=6.495;HRun=0;HaplotypeScore=0.0;MQ=45.82;MQ0=1;MQRankSum=-0.851;QD=14.83;ReadPosRankSum=0.153;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:14,16:30:99:475,0,397
12    9456332    .    A    G    41.02    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.53;MQ0=1;QD=10.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:72,6,0
12    9456504    .    A    G    56.63    MQFilter40;QDFilter2    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=9.6;MQ0=52;MQRankSum=0.336;QD=0.91;ReadPosRankSum=0.103;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:42,20:62:86.62:87,0,108
12    9456640    .    C    A    182.13    MQFilter40;QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DP=98;Dels=0.0;FS=15.563;HRun=0;HaplotypeScore=0.0;MQ=8.9;MQ0=87;MQRankSum=2.52;QD=1.86;ReadPosRankSum=0.278;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:75,23:98:26.29:212,0,26
12    9456729    rs11050148    T    C    622.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.37;MQ0=47;QD=9.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    1/1:24,43:68:57.15:656,57,0
12    9456838    rs10843357    G    A    750.78    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=37.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:784,60,0
12    9458412    rs10743653    G    C    43.31    MQFilter40;QDFilter2    AB=0.247;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=73;Dels=0.0;FS=23.222;HRun=2;HaplotypeScore=0.7887;MQ=9.17;MQ0=58;MQRankSum=0.0;QD=0.59;ReadPosRankSum=-1.448;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:18,55:73:73.30:73,0,121
12    9458525    rs10743654    G    A    628.43    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=42.61;MQ0=0;MQRankSum=-1.66;QD=14.96;ReadPosRankSum=0.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:19,23:42:99:658,0,543
12    9458891    .    A    G    146.65    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DP=51;Dels=0.0;FS=10.61;HRun=0;HaplotypeScore=0.0;MQ=40.74;MQ0=3;MQRankSum=-1.877;QD=2.88;ReadPosRankSum=0.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:38,13:51:99:177,0,1067
12    9459854    rs9971685    G    C    500.58    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.582;DB;DP=61;Dels=0.0;FS=2.509;HRun=3;HaplotypeScore=0.0;MQ=46.83;MQ0=5;MQRankSum=-0.976;QD=8.21;ReadPosRankSum=0.708;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341155    GT:AD:DP:GQ:PL    0/1:36,25:61:99:531,0,1105
12    9462709    rs2889720    A    G    234.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=26.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:267,21,0
12    9462754    rs2377757    G    A    403.42    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.919;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=1.051;QD=19.21;ReadPosRankSum=0.662;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:6,15:21:99:433,0,152
12    9462785    rs12580730    C    G    410.35    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.243;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.974;QD=18.65;ReadPosRankSum=0.564;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:7,15:22:99:440,0,220
12    9463010    rs4883234    C    G    2412.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.59;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2446,190,0
12    9463077    rs10771513    A    C    250.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.48;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=45.92;MQ0=0;MQRankSum=-1.184;QD=8.95;ReadPosRankSum=1.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:16,12:28:99:281,0,542
12    9463105    rs11050177    A    G    168.52    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=38.91;MQ0=1;MQRankSum=-2.165;QD=9.36;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:9,9:18:99:199,0,258
12    9463774    rs55809356    G    T    277.66    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.297;DB;DP=31;Dels=0.0;FS=1.569;HRun=1;HaplotypeScore=0.0;MQ=38.23;MQ0=1;MQRankSum=0.377;QD=8.96;ReadPosRankSum=-0.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:18,13:31:99:308,0,413
12    9463806    rs10771515    T    C    698.29    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.9;MQ0=4;QD=24.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    1/1:0,28:28:66.17:731,66,0
12    9463997    rs11050182    T    C    250.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.27;MQ0=1;QD=27.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:284,24,0
12    9464133    rs10843383    C    G    1150.13    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.476;DB;DP=102;Dels=0.0;FS=3.37;HRun=0;HaplotypeScore=7.0289;MQ=51.89;MQ0=0;MQRankSum=0.653;QD=11.28;ReadPosRankSum=1.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:59,43:102:99:1180,0,1599
12    9464241    rs61917427    C    A    296.57    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=132;Dels=0.0;FS=8.9;HRun=0;HaplotypeScore=2.7463;MQ=54.67;MQ0=5;MQRankSum=-4.81;QD=2.25;ReadPosRankSum=-1.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:100,32:132:99:327,0,3217
12    9464828    rs12581470    C    T    621    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.066;DB;DP=52;Dels=0.0;FS=5.244;HRun=0;HaplotypeScore=0.0;MQ=53.89;MQ0=1;MQRankSum=0.782;QD=11.94;ReadPosRankSum=-0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:27,25:52:99:651,0,755
12    9465094    rs67858269    C    G    206.85    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.83;MQ0=2;MQRankSum=3.165;QD=12.93;ReadPosRankSum=1.892;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-22B23.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543664    GT:AD:DP:GQ:PL    0/1:8,8:16:41.02:237,0,41
12    9552264    rs149252124    C    G    259.05    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.937;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.15;MQ0=1;MQRankSum=0.913;QD=10.79;ReadPosRankSum=0.283;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-599J14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540982    GT:AD:DP:GQ:PL    0/1:10,14:24:99:289,0,193
12    9552577    rs61914449    T    C    176.79    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.94;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=36.74;MQ0=6;MQRankSum=-0.058;QD=5.89;ReadPosRankSum=0.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-599J14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540982    GT:AD:DP:GQ:PL    0/1:18,12:30:99:207,0,386
12    9555110    rs12821647    A    G    366.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.35;MQ0=22;QD=8.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-599J14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540982    GT:AD:DP:GQ:PL    1/1:0,42:42:33.10:399,33,0
12    9555185    rs74425251    A    G    147.99    MQFilter40    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8316;MQ=35.44;MQ0=8;MQRankSum=-1.31;QD=5.29;ReadPosRankSum=2.071;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-599J14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540982    GT:AD:DP:GQ:PL    0/1:14,13:27:99:178,0,360
12    9555195    rs58903301    T    TC    60.90    PASS    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=19;FS=3.222;HRun=7;HaplotypeScore=101.3025;IndelType=I;MQ=36.78;MQ0=6;MQRankSum=-1.632;QD=2.34;ReadPosRankSum=1.763;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-599J14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540982    GT:AD:DP:GQ:PL    0/1:21,5:19:99:100,0,273
12    9571547    rs61916776    C    G    680.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.75;MQ0=0;QD=29.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:714,57,0
12    9571599    rs73242993    C    A    264.90    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.652;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=44.48;MQ0=0;MQRankSum=-1.591;QD=16.56;ReadPosRankSum=-1.355;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:7,9:16:99:295,0,200
12    9571670    rs77617533    T    C    152.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=27.43;MQ0=2;QD=16.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,9:9:15.05:185,15,0
12    9572244    rs7305608    A    G    952.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.58;MQ0=1;QD=34.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,28:28:81.22:985,81,0
12    9572819    rs10843740    C    T    201.73    MQFilter40    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.024;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.49;MQ0=8;MQRankSum=0.708;QD=5.76;ReadPosRankSum=0.366;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:18,17:35:99:232,0,169
12    9572844    .    T    G    338.21    MQFilter40    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.714;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=33.31;MQ0=6;MQRankSum=0.82;QD=8.67;ReadPosRankSum=0.455;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:19,20:39:99:368,0,232
12    9572871    rs10843741    T    C    369.21    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.051;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.94;MQ0=4;MQRankSum=0.556;QD=9.47;ReadPosRankSum=-0.455;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:18,21:39:99:399,0,264
12    9572944    rs7955974    G    A    161.03    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.848;DB;DP=26;Dels=0.0;FS=2.246;HRun=1;HaplotypeScore=0.0;MQ=42.25;MQ0=1;MQRankSum=2.113;QD=6.19;ReadPosRankSum=-0.582;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:18,8:26:99:191,0,336
12    9573130    rs7358608    C    T    163.89    MQFilter40    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=27.31;MQ0=8;MQRankSum=1.197;QD=4.2;ReadPosRankSum=0.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:30,9:39:99:194,0,468
12    9573223    rs4763936    C    A    525.28    MQFilter40    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=0.119;DB;DP=34;Dels=0.0;FS=1.661;HRun=1;HaplotypeScore=6.6532;MQ=34.1;MQ0=1;MQRankSum=-0.595;QD=15.45;ReadPosRankSum=-0.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:13,21:34:99:555,0,218
12    9573224    rs7358609    C    T    90.47    MQFilter40    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=2.052;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.6532;MQ=34.1;MQ0=1;MQRankSum=0.459;QD=2.66;ReadPosRankSum=0.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:27,7:34:99:120,0,653
12    9573338    rs4763950    G    A    419.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.77;MQ0=3;QD=20.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,19:20:39.09:453,39,0
12    9573424    rs6487908    G    A    62.26    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.3;MQ0=0;MQRankSum=0.358;QD=12.45;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:2,3:5:27.28:92,0,27
12    9573475    rs4763977    A    G    57.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.81;MQ0=0;QD=19.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:90,9,0
12    9574002    rs10771709    C    T    2069.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=55.49;MQ0=0;QD=29.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2102,163,0
12    9574042    rs7298124    C    A    1174.01    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.758;DB;DP=101;Dels=0.0;FS=13.614;HRun=0;HaplotypeScore=1.5767;MQ=54.5;MQ0=0;MQRankSum=0.16;QD=11.62;ReadPosRankSum=-0.403;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:50,51:101:99:1204,0,1142
12    9574119    rs4764050    A    G    2306.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.59;MQ0=1;QD=28.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2340,187,0
12    9574344    rs4237949    T    G    149.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.5;MQ0=0;QD=24.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:182,15,0
12    9577027    rs3825308    C    G    102.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=57.66;MQ0=0;MQRankSum=0.421;QD=10.21;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    0/1:5,5:10:99:132,0,134
12    9577310    rs7296629    A    C    976.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1009,78,0
12    9577992    .    C    T    181.97    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.147;DP=44;Dels=0.0;FS=2.674;HRun=3;HaplotypeScore=0.9578;MQ=26.08;MQ0=3;MQRankSum=0.589;QD=4.14;ReadPosRankSum=0.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    0/1:29,15:44:99:212,0,475
12    9578197    rs76671194    A    T    2106.04    PASS    AB=0.132;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7883;MQ=47.33;MQ0=2;MQRankSum=3.374;QD=22.89;ReadPosRankSum=1.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    0/1:12,79:92:77.81:2136,0,78
12    9578570    rs148935434    T    C    114.98    MQFilter40    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=24;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=33.68;MQ0=5;MQRankSum=-2.24;QD=4.79;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    0/1:17,7:24:99:145,0,399
12    9578589    rs10843759    T    C    318.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=27.61;MQ0=5;QD=17.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    1/1:0,18:18:33.06:351,33,0
12    9580071    rs58482729    A    C    88.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.63;MQ0=2;QD=11.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    1/1:0,5:8:12.01:121,12,0
12    9580203    rs58705479    G    C    2114.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.32;MQ0=10;QD=26.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2147,171,0
12    9580395    rs61914681    C    G    925.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=15.26;MQ0=87;QD=7.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    1/1:41,85:126:84.20:959,84,0
12    9580403    rs61914682    G    A    638.69    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.163;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.63;MQ0=91;MQRankSum=-0.752;QD=4.95;ReadPosRankSum=0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440299    GT:AD:DP:GQ:PL    1/1:59,70:129:3.19:669,3,0
12    9580699    rs79196655    T    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
12    9581584    rs4763564    C    G    30.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.0;QD=5.09;ReadPosRankSum=1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:4,2:6:60.52:61,0,146
12    9581791    rs4763566    T    C    136.34    MQFilter40    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=33;Dels=0.0;FS=2.772;HRun=0;HaplotypeScore=0.7887;MQ=29.79;MQ0=13;MQRankSum=1.479;QD=4.13;ReadPosRankSum=-0.887;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:25,7:33:99:166,0,342
12    9582052    .    G    A    86.19    MQFilter40    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=3.384;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.6;MQ0=3;MQRankSum=-1.808;QD=2.1;ReadPosRankSum=0.376;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:31,10:41:99:116,0,729
12    9582244    .    G    A    214.75    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.017;DP=47;Dels=0.0;FS=7.89;HRun=1;HaplotypeScore=1.5661;MQ=24.59;MQ0=9;MQRankSum=-1.083;QD=4.57;ReadPosRankSum=-0.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:27,18:47:99:245,0,444
12    9583216    rs3864916    T    C    161.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.89;MQ0=2;QD=18.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,8:9:18.04:195,18,0
12    9583221    rs3864915    G    A    161.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.62;MQ0=2;QD=16.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:1,9:10:18.04:195,18,0
12    9583324    rs4012577    G    A    50.95    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.89;MQ0=1;MQRankSum=0.358;QD=8.49;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:3,3:6:54.87:81,0,55
12    9585328    rs1814282    C    G    74.98    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=-1.231;QD=15.0;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:2,3:5:64.96:105,0,65
12    9585407    rs61914693    G    A    68.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.0;MQ0=0;QD=22.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
12    9585487    rs56309949    G    T    41.74    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.03;MQ0=2;MQRankSum=-2.219;QD=3.79;ReadPosRankSum=-1.307;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:6,5:11:71.73:72,0,126
12    9585578    rs75926916    C    T    164.47    MQFilter40    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=25;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=1.399;MQ=20.86;MQ0=9;MQRankSum=0.529;QD=6.58;ReadPosRankSum=0.423;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:11,14:25:99:194,0,108
12    9586494    rs28709702    A    G    31.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=21.4;MQ0=1;QD=6.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,5:5:6.01:62,6,0
12    9589580    rs12425701    C    T    238.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=24.16;MQ0=8;QD=12.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:7,12:19:27.03:271,27,0
12    9589681    rs77571608    C    G    230.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.33;MQ0=2;QD=20.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,11:11:27.02:264,27,0
12    9589717    .    G    T    112.92    MQFilter40    AC=2;AF=1.00;AN=2;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.71;MQ0=6;QD=10.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:4,7:11:15.02:146,15,0
12    9590052    rs149680272    G    A    215.10    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=31;Dels=0.0;FS=7.474;HRun=0;HaplotypeScore=0.0;MQ=23.76;MQ0=6;MQRankSum=1.506;QD=6.94;ReadPosRankSum=0.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:18,13:31:99:245,0,207
12    9590197    rs61914700    T    C    185.37    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=32.97;MQ0=2;QD=20.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:218,18,0
12    9590505    .    G    A    100.06    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.127;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=14.88;MQ0=12;MQRankSum=1.78;QD=3.34;ReadPosRankSum=-1.395;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:20,10:30:74.71:130,0,75
12    9591020    .    C    T    168.08    MQFilter40    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.44;MQ0=0;MQRankSum=0.54;QD=12.93;ReadPosRankSum=1.312;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    0/1:4,9:13:62.73:198,0,63
12    9596091    rs11051007    A    T    167.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=DDX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290818    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:201,18,0
12    9707198    rs146106553    T    C    210.44    MQFilter40    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=13;Dels=0.0;FS=9.542;HRun=0;HaplotypeScore=0.0;MQ=32.73;MQ0=3;MQRankSum=-1.733;QD=16.19;ReadPosRankSum=0.898;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    0/1:2,11:13:17.66:240,0,18
12    9707261    .    G    A    180.05    MQFilter40    AB=0.063;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DP=16;Dels=0.0;FS=9.031;HRun=1;HaplotypeScore=0.5784;MQ=24.35;MQ0=8;MQRankSum=-0.747;QD=11.25;ReadPosRankSum=0.747;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    0/1:1,15:16:14.51:210,0,15
12    9707317    .    T    C    939.83    MQFilter40    AC=2;AF=1.00;AN=2;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.03;MQ0=8;QD=25.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,37:37:78.22:973,78,0
12    9707329    .    G    T    1306.75    MQFilter40    AC=2;AF=1.00;AN=2;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.19;MQ0=8;QD=27.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1340,102,0
12    9707430    .    A    G    535.96    MQFilter40    AC=2;AF=1.00;AN=2;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.41;MQ0=8;QD=23.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,23:23:45.13:569,45,0
12    9707453    .    G    A    155.32    MQFilter40    AC=2;AF=1.00;AN=2;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.46;MQ0=2;QD=19.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:188,15,0
12    9707468    .    G    A    37.66    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.13;MQ0=2;QD=9.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,4:4:6.01:69,6,0
12    9713438    rs76076453    T    C    78.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.26;MQ0=5;QD=7.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,10:10:12.01:111,12,0
12    9727535    rs190420832    T    C    61.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.22;MQ0=2;QD=8.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,7:7:9.02:94,9,0
12    9727586    rs10771888    T    G    146.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.07;MQ0=1;QD=14.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,10:10:18.02:179,18,0
12    9727596    rs10771889    A    C    217    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.75;MQ0=1;QD=18.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,12:12:24.04:250,24,0
12    9727659    rs77570192    G    A    237.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.92;MQ0=1;QD=19.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-726G1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518709    GT:AD:DP:GQ:PL    1/1:0,12:12:24.05:271,24,0
12    9750965    rs10734802    T    C    727.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=36.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229402    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:761,57,0
12    9751035    rs35262804    C    CAT    2435.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=182.8105;IndelType=I;MQ=60.17;MQ0=0;QD=51.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229402    GT:AD:DP:GQ:PL    1/1:3,43:47:99:2477,135,0
12    9754011    rs150568392    G    C    211.02    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.531;QD=19.18;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229402    GT:AD:DP:GQ:PL    0/1:3,8:11:84.39:241,0,84
12    9754044    rs2191965    A    G    530.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.169;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=22.09;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229402    GT:AD:DP:GQ:PL    0/1:8,16:24:99:560,0,213
12    9754221    rs34177096    A    AAAAC    1297.42    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.914;DB;DP=56;FS=2.317;HRun=0;HaplotypeScore=203.9517;IndelType=I;MQ=60.97;MQ0=0;MQRankSum=0.735;QD=23.17;ReadPosRankSum=-0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229402    GT:AD:DP:GQ:PL    0/1:34,22:56:99:1336,0,1167
12    9822387    rs16914640    C    G    402.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.166;DB;DP=30;Dels=0.0;FS=3.696;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.622;QD=13.42;ReadPosRankSum=-1.12;SNPEFF_AMINO_ACID_CHANGE=N13K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9822349_9822391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000466035    GT:AD:DP:GQ:PL    0/1:15,15:30:99:433,0,466
12    9833398    rs6488123    A    G    45.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=7.61;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261339    GT:AD:DP:GQ:PL    0/1:3,3:6:75.64:76,0,101
12    9833628    rs3764021    C    T    490.71    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.967;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.46;MQ0=0;MQRankSum=0.012;QD=11.41;ReadPosRankSum=-0.554;SNPEFF_AMINO_ACID_CHANGE=S15;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_9833519_9833629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479410    GT:AD:DP:GQ:PL    0/1:25,18:43:99:521,0,703
12    9840773    rs7310460    T    A    148.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=0.198;QD=14.89;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479410    GT:AD:DP:GQ:PL    0/1:4,6:10:54.83:179,0,55
12    9847133    rs10492164    C    T    95.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=13.59;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466035    GT:AD:DP:GQ:PL    0/1:3,4:7:99:125,0,104
12    9847578    rs115244044    A    G    196.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.485;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.783;QD=9.36;ReadPosRankSum=-0.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261339    GT:AD:DP:GQ:PL    0/1:14,7:21:99:226,0,523
12    9847990    rs2401388    C    T    377.40    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.276;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.64;MQ0=0;MQRankSum=-0.276;QD=11.44;ReadPosRankSum=1.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261339    GT:AD:DP:GQ:PL    0/1:20,13:33:99:407,0,578
12    9848439    .    T    TTGC    1140.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.831;DP=51;FS=5.337;HRun=0;HaplotypeScore=360.9844;IndelType=I;MQ=58.77;MQ0=0;MQRankSum=0.724;QD=21.51;ReadPosRankSum=0.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261339    GT:AD:DP:GQ:PL    1/1:26,27:51:37.88:1182,38,0
12    9848454    rs78879891    A    C    280.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.331;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7378;MQ=58.58;MQ0=0;MQRankSum=-2.7;QD=6.1;ReadPosRankSum=1.701;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261339    GT:AD:DP:GQ:PL    1/1:5,40:46:24.07:314,24,0
12    9848883    rs2894    A    G    332    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.664;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.01;MQ0=0;MQRankSum=0.029;QD=13.83;ReadPosRankSum=-0.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261339    GT:AD:DP:GQ:PL    0/1:12,12:24:99:362,0,415
12    9885526    rs12304510    C    T    657.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.692;DB;DP=46;Dels=0.0;FS=11.509;HRun=0;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=1.124;QD=14.29;ReadPosRankSum=1.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLECL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327839    GT:AD:DP:GQ:PL    0/1:23,23:46:99:687,0,671
12    9885707    rs112979434    A    ATAAGT    1364.44    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.935;DB;DP=51;FS=2.512;HRun=0;HaplotypeScore=225.1754;IndelType=I;MQ=58.36;MQ0=0;MQRankSum=-0.298;QD=26.75;ReadPosRankSum=-0.092;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_9885545_9885895;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLECL1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000327839    GT:AD:DP:GQ:PL    0/1:33,17:51:99:1403,0,1613
12    9885961    rs10492165    A    G    207.83    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=17.32;ReadPosRankSum=-0.689;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLECL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327839    GT:AD:DP:GQ:PL    0/1:5,7:12:99:238,0,152
12    9885999    rs10492166    G    A    106.38    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.28;ReadPosRankSum=0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLECL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327839    GT:AD:DP:GQ:PL    0/1:1,4:5:27.19:136,0,27
12    9906067    rs1051065    T    C    515.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.199;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.509;QD=17.18;ReadPosRankSum=0.554;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416624    GT:AD:DP:GQ:PL    0/1:12,18:30:99:546,0,375
12    9980243    rs2232543    A    G    1099.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279544    GT:AD:DP:GQ:PL    1/1:0,32:32:84.25:1133,84,0
12    9984847    rs2232546    A    C    245.79    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.836;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.532;QD=12.29;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279544    GT:AD:DP:GQ:PL    0/1:11,9:20:99:276,0,396
12    9994445    rs33911869    GTGT    G    1730.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=172.8137;IndelType=D;MQ=58.77;MQ0=0;QD=43.25;SNPEFF_AMINO_ACID_CHANGE=C125-;SNPEFF_CODON_CHANGE=tgt/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_12_9994408_9994550;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279544    GT:AD:DP:GQ:PL    1/1:3,37:40:99:1772,111,0
12    10005778    rs2594072    A    G    51.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539028    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:84,9,0
12    10005780    rs2539933    G    A    51.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539028    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:84,9,0
12    10015082    rs253147    G    A    581.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228438    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:615,45,0
12    10015177    rs253146    A    G    443.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228438    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:477,36,0
12    10069166    rs524994    C    A    235.47    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.847;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.557;QD=11.21;ReadPosRankSum=0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339766    GT:AD:DP:GQ:PL    0/1:13,8:21:99:265,0,482
12    10069302    rs526680    C    T    1424.90    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.863;DB;DP=106;Dels=0.0;FS=2.58;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.0;QD=13.44;ReadPosRankSum=-0.511;SNPEFF_AMINO_ACID_CHANGE=G136D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10069299_10069402;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339766    GT:AD:DP:GQ:PL    0/1:57,49:106:99:1455,0,1849
12    10069616    rs12306080    G    A    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-1.38;QD=5.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339766    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,152
12    10123861    rs525013    G    A    96.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.77;ReadPosRankSum=-1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355690    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,176
12    10124336    rs2984956    T    C    726.36    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.852;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.242;QD=12.52;ReadPosRankSum=1.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304361    GT:AD:DP:GQ:PL    0/1:32,26:58:99:756,0,1006
12    10124373    rs2961542    C    T    384.73    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.3;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.02;QD=12.41;ReadPosRankSum=-1.982;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304361    GT:AD:DP:GQ:PL    0/1:18,13:31:99:415,0,609
12    10131684    rs607567    T    G    661.04    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=1.148;DB;DP=50;Dels=0.0;FS=1.866;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.954;QD=13.22;ReadPosRankSum=-0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304361    GT:AD:DP:GQ:PL    0/1:23,27:50:99:691,0,749
12    10131865    rs608418    T    C    72.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.58;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304361    GT:AD:DP:GQ:PL    0/1:2,3:5:32.73:103,0,33
12    10136672    rs2961544    G    A    96.38    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=13;Dels=0.0;FS=3.358;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=7.41;ReadPosRankSum=-0.101;SNPEFF_AMINO_ACID_CHANGE=E58K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10136645_10136677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396506    GT:AD:DP:GQ:PL    0/1:7,6:13:99:126,0,219
12    10137557    rs479499    A    C    256.88    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=10.62;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.592;QD=13.52;ReadPosRankSum=1.429;SNPEFF_AMINO_ACID_CHANGE=K211Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10137469_10137625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350667    GT:AD:DP:GQ:PL    0/1:10,9:19:99:287,0,281
12    10146014    rs11447004    A    AC    124.99    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.281;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=91.4005;IndelType=I;MQ=58.24;MQ0=0;MQRankSum=0.377;QD=8.93;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396506    GT:AD:DP:GQ:PL    0/1:8,5:14:83.38:164,0,83
12    10146236    rs617956    C    T    203.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.263;QD=12.75;ReadPosRankSum=0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396506    GT:AD:DP:GQ:PL    0/1:8,8:16:99:234,0,290
12    10149406    rs581949    T    C    1884.80    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=5.313;DB;DP=153;Dels=0.0;FS=7.618;HRun=2;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=1.744;QD=12.32;ReadPosRankSum=-1.089;SNPEFF_AMINO_ACID_CHANGE=E48G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10149398_10149412;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398939    GT:AD:DP:GQ:PL    0/1:75,77:153:99:1915,0,2427
12    10149657    rs582968    T    C    483.42    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.413;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.276;QD=13.81;ReadPosRankSum=-0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449959    GT:AD:DP:GQ:PL    0/1:18,17:35:99:513,0,605
12    10149851    rs583903    C    T    1349.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_AMINO_ACID_CHANGE=G31D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10149759_10149878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348658    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1382,102,0
12    10150974    rs2273986    A    G    879.51    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=0.865;DB;DP=72;Dels=0.0;FS=6.52;HRun=1;HaplotypeScore=1.8288;MQ=58.16;MQ0=0;MQRankSum=1.9;QD=12.22;ReadPosRankSum=1.135;SNPEFF_AMINO_ACID_CHANGE=S24P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10150881_10150979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298527    GT:AD:DP:GQ:PL    0/1:43,28:72:99:910,0,1407
12    10151405    rs7980924    T    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449959    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    10151642    rs612593    T    C    5940.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8135;MQ=59.77;MQ0=0;QD=33.37;SNPEFF_AMINO_ACID_CHANGE=I20V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10151636_10151879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298527    GT:AD:DP:GQ:PL    1/1:0,178:178:99:5940,442,0
12    10151762    rs11379994    T    TC    5082.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.16;DB;DP=112;FS=0.0;HRun=1;HaplotypeScore=261.3982;IndelType=I;MQ=60.85;MQ0=0;MQRankSum=1.065;QD=45.38;ReadPosRankSum=0.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449959    GT:AD:DP:GQ:PL    1/1:3,109:112:99:5082,286,0
12    10163375    rs1359082    C    A    354.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=21;Dels=0.0;FS=4.01;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.336;QD=16.86;ReadPosRankSum=-0.485;SNPEFF_AMINO_ACID_CHANGE=T6N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10163231_10163449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLEC12B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338896    GT:AD:DP:GQ:PL    0/1:7,14:21:99:384,0,225
12    10163379    rs1359083    C    T    376.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.275;DB;DP=21;Dels=0.0;FS=4.01;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.783;QD=17.91;ReadPosRankSum=-0.037;SNPEFF_AMINO_ACID_CHANGE=Y7;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10163231_10163449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLEC12B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338896    GT:AD:DP:GQ:PL    0/1:7,14:21:99:406,0,212
12    10165469    rs476474    A    G    1463.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=T59;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10165384_10165482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLEC12B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338896    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1497,108,0
12    10165593    rs620449    T    G    79.27    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.85;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396506    GT:AD:DP:GQ:PL    0/1:1,4:5:25.76:109,0,26
12    10167277    rs637790    G    C    1741.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=37.06;SNPEFF_AMINO_ACID_CHANGE=V116L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10167122_10167340;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLEC12B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338896    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1775,129,0
12    10206925    rs7315231    A    G    1170.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=T49;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10206870_10206950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355819    GT:AD:DP:GQ:PL    1/1:0,36:36:90.28:1203,90,0
12    10215582    rs10772230    G    A    648.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355819    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:681,51,0
12    10217326    rs10622534    C    CTT    4750.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.0;HRun=1;HaplotypeScore=182.0708;IndelType=I;MQ=61.87;MQ0=0;QD=60.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315330    GT:AD:DP:GQ:PL    1/1:0,78:79:99:4750,238,0
12    10233652    rs7980801    C    T    274.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544104    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:308,24,0
12    10241553    rs5008763    C    A    34.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414501    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
12    10241593    rs1352477    A    T    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414501    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:66,6,0
12    10241829    rs2277416    G    T    442.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315330    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:475,36,0
12    10251157    rs6488256    T    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
12    10251256    rs112291636    GA    G    154.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=11;HaplotypeScore=52.3534;IndelType=D;MQ=58.63;MQ0=0;QD=17.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315330    GT:AD:DP:GQ:PL    1/1:0,9:9:23.97:197,24,0
12    10251287    rs6488257    C    T    351.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;QD=29.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315330    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:385,33,0
12    10251385    rs3816845    T    C    982.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315330    GT:AD:DP:GQ:PL    1/1:0,31:31:84.22:1015,84,0
12    10251445    rs2306894    C    G    763.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.69;SNPEFF_AMINO_ACID_CHANGE=G26A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10251407_10251584;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315330    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:796,60,0
12    10251498    rs148373579    C    T    314.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.355;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=57.77;MQ0=0;MQRankSum=-0.684;QD=14.99;ReadPosRankSum=-0.988;SNPEFF_AMINO_ACID_CHANGE=T8;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10251407_10251584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315330    GT:AD:DP:GQ:PL    0/1:9,12:21:99:345,0,254
12    10251650    rs2306893    A    G    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414501    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
12    10271055    rs7959451    T    C    1644    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLEC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349926    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1677,129,0
12    10275684    rs11053608    T    G    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLEC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310002    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
12    10279513    rs35532667    T    TA    231.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.794;DB;DP=20;FS=0.0;HRun=13;HaplotypeScore=126.7182;IndelType=I;MQ=55.52;MQ0=0;MQRankSum=-0.072;QD=11.6;ReadPosRankSum=-0.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLEC7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310002    GT:AD:DP:GQ:PL    0/1:8,11:20:16.87:271,0,17
12    10312328    rs4237962    T    A    254.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339968    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
12    10312648    rs13306593    C    A    3138.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9916;MQ=59.26;MQ0=0;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339968    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3171,244,0
12    10312691    rs17174597    T    C    1643.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9895;MQ=59.48;MQ0=0;QD=37.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339968    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1677,126,0
12    10312776    rs17174598    G    A    536.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339968    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:570,42,0
12    10312878    rs2634156    C    T    672.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339968    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:706,54,0
12    10312914    rs3816844    G    A    1286.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339968    GT:AD:DP:GQ:PL    1/1:0,37:37:96.32:1320,96,0
12    10313075    rs3736235    T    C    2693.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=31.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538873    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2727,214,0
12    10313134    rs3736234    G    A    1548.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.42;MQ0=0;QD=38.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538873    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1582,117,0
12    10313265    rs3736233    C    T    800.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538873    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:833,63,0
12    10313358    rs3736232    C    G    2078.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538873    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2112,165,0
12    10313722    rs11053647    A    T    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309539    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
12    10342356    rs12306715    A    T    459.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543484    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:492,39,0
12    10370763    rs73058099    A    G    344.65    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.513;DB;DP=31;Dels=0.0;FS=15.511;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.973;QD=11.12;ReadPosRankSum=1.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GABARAPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537201    GT:AD:DP:GQ:PL    0/1:17,14:31:99:375,0,539
12    10460543    rs2302489    A    T    130.24    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=10.02;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381907    GT:AD:DP:GQ:PL    0/1:6,7:13:99:160,0,214
12    10461883    rs10734825    A    G    220.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336164    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:253,21,0
12    10462052    rs10772256    T    G    1220.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=S25A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10461987_10462079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336164    GT:AD:DP:GQ:PL    1/1:0,38:38:90.30:1253,90,0
12    10462431    rs7980604    G    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336164    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    10467533    rs2537752    T    A    193.59    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.906;QD=10.75;ReadPosRankSum=-0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538997    GT:AD:DP:GQ:PL    0/1:11,7:18:99:224,0,379
12    10511662    rs10743886    C    T    1189.70    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.707;DB;DP=84;Dels=0.0;FS=5.77;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.975;QD=14.16;ReadPosRankSum=2.282;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-277P12.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535911    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1220,0,1260
12    10525644    rs1351113    A    G    123.28    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.079;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9983;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=6.49;ReadPosRankSum=-0.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396451    GT:AD:DP:GQ:PL    0/1:11,7:19:99:153,0,403
12    10525740    rs1049172    C    T    1509.30    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=99;Dels=0.0;FS=1.756;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.496;QD=15.25;ReadPosRankSum=0.861;SNPEFF_AMINO_ACID_CHANGE=T208;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10524952_10525830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240618    GT:AD:DP:GQ:PL    0/1:44,55:99:99:1539,0,1275
12    10532111    rs2255353    T    G    225.40    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.657;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.09;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240618    GT:AD:DP:GQ:PL    0/1:6,10:16:99:255,0,216
12    10532326    rs2255336    T    C    753.81    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.631;DB;DP=54;Dels=0.0;FS=3.964;HRun=0;HaplotypeScore=1.5362;MQ=57.55;MQ0=0;MQRankSum=1.683;QD=13.96;ReadPosRankSum=0.035;SNPEFF_AMINO_ACID_CHANGE=T72A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10532299_10532391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240618    GT:AD:DP:GQ:PL    0/1:29,25:54:99:784,0,862
12    10532434    rs2617151    A    G    298.56    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-1.263;QD=12.98;ReadPosRankSum=-0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240618    GT:AD:DP:GQ:PL    0/1:9,14:23:99:329,0,280
12    10541251    rs2294147    T    C    522.02    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.551;QD=23.73;ReadPosRankSum=0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240618    GT:AD:DP:GQ:PL    0/1:7,15:22:99:552,0,222
12    10560591    rs2734565    C    T    53.43    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.63;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381904    GT:AD:DP:GQ:PL    0/1:4,3:7:83.42:83,0,129
12    10560824    rs2617169    T    A    109.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.18;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381904    GT:AD:DP:GQ:PL    0/1:2,4:6:61.16:139,0,61
12    10560957    rs2617170    T    C    189.37    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=7.57;ReadPosRankSum=1.483;SNPEFF_AMINO_ACID_CHANGE=N104S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10560928_10560981;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309384    GT:AD:DP:GQ:PL    0/1:18,7:25:99:219,0,574
12    10561913    rs3214902    TA    T    323.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.349;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=50.3061;IndelType=D;MQ=60.43;MQ0=0;MQRankSum=1.116;QD=14.7;ReadPosRankSum=-1.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381904    GT:AD:DP:GQ:PL    0/1:11,11:22:99:363,0,428
12    10562025    rs1841957    C    T    1742.75    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.138;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8662;MQ=59.79;MQ0=0;MQRankSum=0.133;QD=15.56;ReadPosRankSum=0.151;SNPEFF_AMINO_ACID_CHANGE=S50;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10561988_10562356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309384    GT:AD:DP:GQ:PL    0/1:50,61:112:99:1773,0,1531
12    10562089    rs1841958    A    C    1662.82    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.81;MQ0=0;MQRankSum=0.407;QD=13.63;ReadPosRankSum=1.03;SNPEFF_AMINO_ACID_CHANGE=I29S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10561988_10562356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309384    GT:AD:DP:GQ:PL    0/1:63,59:122:99:1693,0,2031
12    10570965    rs2682495    C    G    5344.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.7;MQ0=2;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=C155S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10570943_10571097;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,157:157:99:5344,400,0
12    10571042    rs2741882    A    G    6199.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=211;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.19;MQ0=19;QD=29.38;SNPEFF_AMINO_ACID_CHANGE=Y129;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10570943_10571097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,211:211:99:6200,475,0
12    10571091    rs2682494    T    G    4165.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.64;MQ0=26;QD=26.53;SNPEFF_AMINO_ACID_CHANGE=H113P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10570943_10571097;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:1,156:157:99:4165,346,0
12    10571106    rs2682493    G    C    3853.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=36.5;MQ0=17;QD=27.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:1,137:138:99:3853,310,0
12    10571158    rs10743890    C    T    2478.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=46.68;MQ0=4;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2512,190,0
12    10571177    rs4394921    A    G    1991.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.64;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2024,154,0
12    10571380    rs4612903    A    G    164.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
12    10571504    rs4579992    C    T    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.96;MQ0=1;QD=22.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
12    10571514    rs4275705    C    G    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.96;MQ0=1;QD=23.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
12    10572839    rs2253365    A    T    487.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.95;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:521,39,0
12    10572982    rs2741881    A    G    3755.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=50.94;MQ0=9;MQRankSum=1.091;QD=31.82;ReadPosRankSum=0.353;SNPEFF_AMINO_ACID_CHANGE=D56;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10572963_10573149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:1,117:118:99:3755,254,0
12    10573094    rs2682491    C    G    640.38    MQFilter40    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.969;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.43;MQ0=13;MQRankSum=-0.695;QD=9.42;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=W19S;SNPEFF_CODON_CHANGE=tGg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10572963_10573149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    0/1:32,36:68:99:670,0,487
12    10573095    rs2682490    A    G    1427.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.96;MQ0=13;QD=21.31;SNPEFF_AMINO_ACID_CHANGE=W19R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10572963_10573149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1461,138,0
12    10573130    .    G    A    137.89    MQFilter40    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.806;DP=41;Dels=0.0;FS=2.793;HRun=0;HaplotypeScore=0.0;MQ=22.05;MQ0=13;MQRankSum=2.806;QD=3.36;ReadPosRankSum=0.25;SNPEFF_AMINO_ACID_CHANGE=T7I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10572963_10573149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    0/1:26,15:41:99:168,0,401
12    10573145    rs2682489    C    T    431.26    MQFilter40    AB=0.158;AC=1;AF=0.50;AN=2;BaseQRankSum=0.569;DB;DP=39;Dels=0.0;FS=15.441;HRun=1;HaplotypeScore=2.5916;MQ=20.75;MQ0=14;MQRankSum=2.63;QD=11.06;ReadPosRankSum=-0.711;SNPEFF_AMINO_ACID_CHANGE=S2N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10572963_10573149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381903    GT:AD:DP:GQ:PL    0/1:6,32:39:50.53:461,0,51
12    10573211    rs10734829    A    G    325.84    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.063;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.66;MQ0=2;MQRankSum=2.457;QD=17.15;ReadPosRankSum=-1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-277P12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539033    GT:AD:DP:GQ:PL    1/1:4,15:19:8.44:358,8,0
12    10583611    rs3003    C    T    217.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-277P12.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539033    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
12    10586921    .    C    T    203.16    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DP=16;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.9894;MQ=37.8;MQ0=2;MQRankSum=-0.965;QD=12.7;ReadPosRankSum=0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:6,10:16:99:233,0,176
12    10586946    rs113946028    C    T    306.38    MQFilter40    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.434;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=30.83;MQ0=1;MQRankSum=-1.236;QD=12.77;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:7,17:24:99:336,0,173
12    10586956    rs72475445    C    G    361.90    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.02;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.27;MQ0=1;MQRankSum=-1.237;QD=11.31;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:12,20:32:99:392,0,261
12    10586961    rs1356930    T    C    290.16    MQFilter40    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.757;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.07;MQ0=1;MQRankSum=0.79;QD=7.84;ReadPosRankSum=-0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:24,13:37:99:320,0,492
12    10586978    .    A    AT    763.27    PASS    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DP=39;FS=0.0;HRun=3;HaplotypeScore=322.6264;IndelType=I;MQ=36.59;MQ0=0;MQRankSum=0.133;QD=16.96;ReadPosRankSum=0.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:17,28:39:99:802,0,461
12    10586989    rs5796394    AT    A    512.41    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DB;DP=45;FS=0.0;HRun=4;HaplotypeScore=341.622;IndelType=D;MQ=39.76;MQ0=0;MQRankSum=0.047;QD=10.05;ReadPosRankSum=0.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:33,18:45:99:551,0,919
12    10587111    rs61917677    A    G    4159.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.79;MQ=51.19;MQ0=2;QD=28.69;SNPEFF_AMINO_ACID_CHANGE=F102S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10587085_10587129;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381902    GT:AD:DP:GQ:PL    1/1:0,144:145:99:4160,331,0
12    10587158    rs35801775    A    T    1583.88    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=3.01;DB;DP=94;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=49.95;MQ0=0;MQRankSum=1.751;QD=16.85;ReadPosRankSum=-1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:34,60:94:99:1614,0,801
12    10587250    rs4583063    A    G    546.34    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=1.089;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.6;MQ0=0;MQRankSum=0.451;QD=20.23;ReadPosRankSum=1.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:8,19:27:99:576,0,193
12    10587272    rs4525323    T    C    337.83    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.47;MQ0=0;MQRankSum=0.51;QD=19.87;ReadPosRankSum=0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:4,13:17:85.55:368,0,86
12    10588454    rs111449827    A    G    190.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.458;DB;DP=84;Dels=0.0;FS=25.954;HRun=1;HaplotypeScore=0.734;MQ=44.84;MQ0=14;MQRankSum=-5.763;QD=2.27;ReadPosRankSum=-3.663;SNPEFF_AMINO_ACID_CHANGE=N44;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10588399_10588592;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:56,28:84:99:221,0,1846
12    10588530    rs75545535    C    G    936.32    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=141;Dels=0.0;FS=35.92;HRun=1;HaplotypeScore=1.3123;MQ=42.85;MQ0=16;MQRankSum=1.652;QD=6.64;ReadPosRankSum=3.135;SNPEFF_AMINO_ACID_CHANGE=R19P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10588399_10588592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:88,53:141:99:966,0,2077
12    10588566    rs149277235    G    A    883.60    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.166;DB;DP=124;Dels=0.0;FS=28.602;HRun=0;HaplotypeScore=0.9159;MQ=42.59;MQ0=17;MQRankSum=3.933;QD=7.13;ReadPosRankSum=-1.789;SNPEFF_AMINO_ACID_CHANGE=T7I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10588399_10588592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:70,54:124:99:914,0,1771
12    10588581    rs28403159    T    C    625.72    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.48;DB;DP=109;Dels=0.0;FS=7.927;HRun=0;HaplotypeScore=0.0;MQ=40.26;MQ0=19;MQRankSum=-5.992;QD=5.74;ReadPosRankSum=-0.466;SNPEFF_AMINO_ACID_CHANGE=N2S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10588399_10588592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381901    GT:AD:DP:GQ:PL    0/1:79,30:109:99:656,0,1780
12    10588647    rs28730284    A    G    401.42    MQFilter40    AB=0.16;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.99;MQ0=5;MQRankSum=-0.441;QD=16.06;ReadPosRankSum=-0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536833    GT:AD:DP:GQ:PL    0/1:4,21:25:22.35:431,0,22
12    10599270    rs7314384    G    A    924.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.702;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7337;MQ=47.43;MQ0=0;MQRankSum=1.316;QD=11.41;ReadPosRankSum=1.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537699    GT:AD:DP:GQ:PL    0/1:45,36:81:99:955,0,1260
12    10599347    rs2682471    T    G    459.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.14;MQ0=1;QD=20.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537699    GT:AD:DP:GQ:PL    1/1:0,22:22:45.10:492,45,0
12    10600282    rs11053804    C    T    331.32    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.528;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=12.27;ReadPosRankSum=-1.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537699    GT:AD:DP:GQ:PL    0/1:16,11:27:99:361,0,593
12    10600368    rs2734442    G    A    216.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537699    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
12    10601690    rs7301582    C    T    100.39    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.731;QD=20.08;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537699    GT:AD:DP:GQ:PL    0/1:1,4:5:27.19:130,0,27
12    10602077    rs2734440    C    T    1104.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=6.797;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.246;MQ=58.82;MQ0=0;MQRankSum=1.539;QD=16.73;ReadPosRankSum=-1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537699    GT:AD:DP:GQ:PL    0/1:33,33:66:99:1134,0,970
12    10602925    rs12824474    T    C    87.97    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.663;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.0;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347831    GT:AD:DP:GQ:PL    0/1:7,4:11:99:118,0,256
12    10603670    rs2253849    T    C    1849.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=29.84;SNPEFF_AMINO_ACID_CHANGE=N29S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10603569_10603786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLRC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347831    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1883,147,0
12    10658942    rs7135490    C    T    2502.80    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=1.492;DB;DP=143;Dels=0.0;FS=2.222;HRun=0;HaplotypeScore=3.7187;MQ=59.35;MQ0=0;MQRankSum=-1.121;QD=17.5;ReadPosRankSum=0.598;SNPEFF_AMINO_ACID_CHANGE=N147;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10658201_10659809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068775.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322446    GT:AD:DP:GQ:PL    0/1:61,82:143:99:2533,0,1914
12    10659438    rs10772299    T    C    4113.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.0;MQ0=1;QD=36.4;SNPEFF_AMINO_ACID_CHANGE=S313P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10658201_10659809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068775.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322446    GT:AD:DP:GQ:PL    1/1:0,113:113:99:4114,325,0
12    10659964    rs10772300    C    G    2372.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068775.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322446    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2405,178,0
12    10675250    rs7980396    G    C    37.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.32;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=V453L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10675202_10675734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC068775.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322446    GT:AD:DP:GQ:PL    0/1:4,2:6:67.90:68,0,150
12    10746385    rs2244387    G    A    374.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-904M10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341141    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:407,30,0
12    10746770    rs2682476    A    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-904M10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341141    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
12    10748004    rs2682483    A    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-904M10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341141    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
12    10748314    rs2168749    C    T    1881.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-904M10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341141    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1914,141,0
12    10748403    rs2682484    A    T    1934.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=35.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-904M10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341141    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1968,147,0
12    10759032    rs10772333    T    C    553.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAGOHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543929    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:586,48,0
12    10760328    rs3947920    G    A    203.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAGOHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543929    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
12    10760335    rs2125090    T    A    327.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAGOHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543929    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:361,27,0
12    10760380    rs2125089    G    A    749.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAGOHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543929    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:783,57,0
12    10763236    rs10845182    G    C    566.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.54;MQ0=0;QD=24.65;SNPEFF_AMINO_ACID_CHANGE=V46;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10763221_10763279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAGOHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320756    GT:AD:DP:GQ:PL    1/1:1,22:23:45.14:600,45,0
12    10763440    rs12811247    G    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAGOHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320756    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
12    10766244    rs10772335    A    C    176.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAGOHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320756    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:209,18,0
12    10772983    rs1870194    A    G    743.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.046;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.54;MQ0=0;MQRankSum=-0.446;QD=14.86;ReadPosRankSum=-0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075503    GT:AD:DP:GQ:PL    0/1:25,25:50:99:773,0,841
12    10774698    rs2900467    A    G    109.43    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.16;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075503    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,175
12    10775195    rs1078437    T    C    660.07    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.735;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=17.84;ReadPosRankSum=1.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075503    GT:AD:DP:GQ:PL    0/1:16,21:37:99:690,0,500
12    10781986    rs2168747    A    G    41.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.4;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535345    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:72,0,70
12    10782115    rs3759259    T    C    349.18    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.806;DB;DP=31;Dels=0.0;FS=1.594;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.417;QD=11.26;ReadPosRankSum=2.481;SNPEFF_AMINO_ACID_CHANGE=S204G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10782092_10782273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000075503    GT:AD:DP:GQ:PL    0/1:17,14:31:99:379,0,547
12    10783729    rs2290717    A    G    384.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6221;MQ=59.05;MQ0=0;MQRankSum=1.471;QD=7.84;ReadPosRankSum=0.415;SNPEFF_AMINO_ACID_CHANGE=S122;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10783644_10783907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000075503    GT:AD:DP:GQ:PL    0/1:32,16:49:99:414,0,951
12    10784021    rs2168746    G    C    204.17    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.01;ReadPosRankSum=-0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535345    GT:AD:DP:GQ:PL    0/1:2,10:12:49.36:234,0,49
12    10786757    rs5796407    T    TGAA    7618.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;FS=0.0;HRun=0;HaplotypeScore=545.4437;IndelType=I;MQ=55.55;MQ0=0;QD=53.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075503    GT:AD:DP:GQ:PL    1/1:24,116:143:99:7619,358,0
12    10786797    rs2252664    C    T    1638.08    PASS    AB=0.363;AC=1;AF=0.50;AN=2;BaseQRankSum=6.032;DB;DP=80;Dels=0.0;FS=1.625;HRun=0;HaplotypeScore=0.734;MQ=59.54;MQ0=0;MQRankSum=0.2;QD=20.48;ReadPosRankSum=-0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075503    GT:AD:DP:GQ:PL    0/1:29,51:80:99:1668,0,688
12    10856845    rs141466000    CA    C    303.03    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=19;FS=0.0;HRun=6;HaplotypeScore=45.689;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.453;QD=15.95;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228251    GT:AD:DP:GQ:PL    0/1:8,11:19:99:342,0,240
12    10871667    rs33016    A    G    725.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=27.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228251    GT:AD:DP:GQ:PL    1/1:0,26:26:60.15:759,60,0
12    10954258    rs619381    C    T    1012.05    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.093;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.462;QD=18.07;ReadPosRankSum=-0.414;SNPEFF_AMINO_ACID_CHANGE=M304I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10954131_10955226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240687    GT:AD:DP:GQ:PL    0/1:25,30:56:99:1042,0,790
12    10958658    rs2537817    T    C    1622.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_AMINO_ACID_CHANGE=M308V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10958650_10959892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240615    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1655,123,0
12    10959031    rs1548803    C    T    370.57    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.48;MQ0=0;MQRankSum=0.34;QD=8.42;ReadPosRankSum=0.063;SNPEFF_AMINO_ACID_CHANGE=L183;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10958650_10959892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240615    GT:AD:DP:GQ:PL    0/1:30,14:44:99:401,0,972
12    10962115    rs3741845    A    G    1248.77    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.864;DB;DP=94;Dels=0.0;FS=5.561;HRun=0;HaplotypeScore=2.3204;MQ=59.75;MQ0=0;MQRankSum=-0.605;QD=13.28;ReadPosRankSum=1.398;SNPEFF_AMINO_ACID_CHANGE=V187A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10961693_10962767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240691    GT:AD:DP:GQ:PL    0/1:53,41:94:99:1279,0,1395
12    10978402    rs597468    G    A    1915.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4947;MQ=59.59;MQ0=0;QD=34.21;SNPEFF_AMINO_ACID_CHANGE=T156M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10977916_10978957;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240619    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1949,141,0
12    10999708    rs1047699    T    C    1000.27    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.513;DB;DP=82;Dels=0.0;FS=7.951;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.431;QD=12.2;ReadPosRankSum=-1.822;SNPEFF_AMINO_ACID_CHANGE=R104G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10999644_10999909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431566    GT:AD:DP:GQ:PL    0/1:43,39:82:99:1030,0,1397
12    10999780    rs1063193    C    T    1321.08    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=3.931;DB;DP=95;Dels=0.0;FS=1.699;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.488;QD=13.91;ReadPosRankSum=-0.508;SNPEFF_AMINO_ACID_CHANGE=D80N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_10999644_10999909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431566    GT:AD:DP:GQ:PL    0/1:51,44:95:99:1351,0,1497
12    11035274    rs28607516    G    T    143.31    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.343;DB;DP=42;Dels=0.0;FS=5.958;HRun=0;HaplotypeScore=0.0;MQ=47.47;MQ0=4;MQRankSum=-4.498;QD=3.41;ReadPosRankSum=0.652;SNPEFF_AMINO_ACID_CHANGE=L42I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11035134_11035297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428168    GT:AD:DP:GQ:PL    0/1:29,13:42:99:173,0,860
12    11035368    rs11054060    T    G    358.96    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=32;Dels=0.0;FS=1.664;HRun=0;HaplotypeScore=0.0;MQ=49.63;MQ0=0;MQRankSum=-0.913;QD=11.22;ReadPosRankSum=1.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428168    GT:AD:DP:GQ:PL    0/1:17,15:32:99:389,0,477
12    11035482    rs10845228    T    C    100.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.741;QD=10.03;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428168    GT:AD:DP:GQ:PL    0/1:6,4:10:99:130,0,201
12    11035533    rs10845229    G    A    247.74    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-1.096;QD=16.52;ReadPosRankSum=0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428168    GT:AD:DP:GQ:PL    0/1:7,8:15:99:278,0,239
12    11061122    rs1015443    T    C    624.96    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.043;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.28;MQ0=0;MQRankSum=-1.248;QD=19.53;ReadPosRankSum=1.291;SNPEFF_AMINO_ACID_CHANGE=N259S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11060525_11062161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390677    GT:AD:DP:GQ:PL    0/1:12,20:32:99:655,0,319
12    11083677    rs10772391    T    C    304.63    MQFilter40    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=2.574;DB;DP=63;Dels=0.0;FS=4.588;HRun=0;HaplotypeScore=3.4308;MQ=39.75;MQ0=9;MQRankSum=-4.248;QD=4.84;ReadPosRankSum=0.052;SNPEFF_AMINO_ACID_CHANGE=D94;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11083528_11083679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256972    GT:AD:DP:GQ:PL    0/1:38,25:63:99:335,0,1118
12    11091432    rs3741843    C    T    470.98    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.49;DB;DP=44;Dels=0.0;FS=2.704;HRun=0;HaplotypeScore=1.8499;MQ=59.48;MQ0=0;MQRankSum=-0.264;QD=10.7;ReadPosRankSum=1.043;SNPEFF_AMINO_ACID_CHANGE=R125;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11090005_11091862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537503    GT:AD:DP:GQ:PL    0/1:28,16:44:99:501,0,839
12    11138683    rs10772397    C    T    858.63    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=2.818;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=59.72;MQ0=0;MQRankSum=0.637;QD=10.6;ReadPosRankSum=-1.124;SNPEFF_AMINO_ACID_CHANGE=P259;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11138512_11139511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506868    GT:AD:DP:GQ:PL    0/1:47,34:81:99:889,0,1399
12    11138852    rs1376251    C    T    720.56    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.09;DB;DP=63;Dels=0.0;FS=2.164;HRun=0;HaplotypeScore=0.9987;MQ=59.27;MQ0=0;MQRankSum=0.146;QD=11.44;ReadPosRankSum=1.215;SNPEFF_AMINO_ACID_CHANGE=C203Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11138512_11139511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506868    GT:AD:DP:GQ:PL    0/1:36,27:63:99:751,0,1231
12    11138935    rs66679979    T    C    1370.31    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.68;DB;DP=86;Dels=0.0;FS=3.072;HRun=0;HaplotypeScore=0.734;MQ=59.46;MQ0=0;MQRankSum=-1.006;QD=15.93;ReadPosRankSum=-0.799;SNPEFF_AMINO_ACID_CHANGE=S175;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11138512_11139511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506868    GT:AD:DP:GQ:PL    0/1:42,44:86:99:1400,0,1294
12    11139589    rs10772398    C    T    103.51    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=6.09;ReadPosRankSum=-0.146;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534923    GT:AD:DP:GQ:PL    0/1:10,7:17:99:133,0,330
12    11139656    rs10772399    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534923    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
12    11149532    rs1450839    A    G    724.64    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.982;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7355;MQ=59.01;MQ0=0;MQRankSum=0.063;QD=15.42;ReadPosRankSum=-0.415;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534923    GT:AD:DP:GQ:PL    0/1:16,28:47:99:755,0,493
12    11149711    rs10845279    C    A    876.27    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.67;DB;DP=56;Dels=0.0;FS=7.421;HRun=0;HaplotypeScore=3.1598;MQ=58.76;MQ0=0;MQRankSum=-1.208;QD=15.65;ReadPosRankSum=-0.386;SNPEFF_AMINO_ACID_CHANGE=R255L;SNPEFF_CODON_CHANGE=cGa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11149094_11150474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538986    GT:AD:DP:GQ:PL    0/1:30,26:56:99:906,0,917
12    11149720    rs10845280    A    G    1030.86    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.043;DB;DP=65;Dels=0.0;FS=2.043;HRun=0;HaplotypeScore=2.2312;MQ=58.93;MQ0=0;MQRankSum=0.295;QD=15.86;ReadPosRankSum=-1.004;SNPEFF_AMINO_ACID_CHANGE=F252S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11149094_11150474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538986    GT:AD:DP:GQ:PL    0/1:32,33:65:99:1061,0,944
12    11149769    rs10845281    T    C    1422.15    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.568;DB;DP=89;Dels=0.0;FS=9.33;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.203;QD=15.98;ReadPosRankSum=-0.51;SNPEFF_AMINO_ACID_CHANGE=I236V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11149094_11150474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538986    GT:AD:DP:GQ:PL    0/1:38,51:89:99:1452,0,1202
12    11150033    rs12226919    G    T    888.29    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=79;Dels=0.0;FS=1.865;HRun=3;HaplotypeScore=2.1445;MQ=57.98;MQ0=0;MQRankSum=-2.624;QD=11.24;ReadPosRankSum=-1.401;SNPEFF_AMINO_ACID_CHANGE=H148N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11149094_11150474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538986    GT:AD:DP:GQ:PL    0/1:38,40:79:99:918,0,1168
12    11150046    rs12226920    G    T    928.20    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=82;Dels=0.0;FS=0.836;HRun=1;HaplotypeScore=4.2588;MQ=58.06;MQ0=0;MQRankSum=-0.349;QD=11.32;ReadPosRankSum=1.241;SNPEFF_AMINO_ACID_CHANGE=H143Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11149094_11150474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538986    GT:AD:DP:GQ:PL    0/1:44,38:82:99:958,0,1313
12    11150054    rs79420812    C    T    1085.89    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=82;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=3.8624;MQ=58.08;MQ0=0;MQRankSum=-1.476;QD=13.08;ReadPosRankSum=1.263;SNPEFF_AMINO_ACID_CHANGE=V141I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11149094_11150474;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538986    GT:AD:DP:GQ:PL    0/1:43,39:82:99:1116,0,1302
12    11150214    rs11054142    G    A    1458.69    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=2.568;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.31;MQ0=0;MQRankSum=2.07;QD=14.59;ReadPosRankSum=-1.008;SNPEFF_AMINO_ACID_CHANGE=A87;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11149094_11150474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538986    GT:AD:DP:GQ:PL    0/1:46,54:100:99:1489,0,1499
12    11150319    rs11054143    T    C    1181.32    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.962;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9298;MQ=59.49;MQ0=0;MQRankSum=-1.395;QD=12.98;ReadPosRankSum=0.772;SNPEFF_AMINO_ACID_CHANGE=A52;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11149094_11150474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538986    GT:AD:DP:GQ:PL    0/1:48,43:91:99:1211,0,1497
12    11150540    rs34965724    CA    C    242.70    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=85.2038;IndelType=D;MQ=58.29;MQ0=0;MQRankSum=-1.271;QD=22.06;ReadPosRankSum=0.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534923    GT:AD:DP:GQ:PL    0/1:3,8:11:59.90:282,0,60
12    11150551    rs4388985    G    A    260.80    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=26.08;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534923    GT:AD:DP:GQ:PL    0/1:2,8:10:51.67:291,0,52
12    11150579    rs1463237    C    T    153.93    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534923    GT:AD:DP:GQ:PL    0/1:1,5:6:18.92:184,0,19
12    11174753    rs1868769    G    A    1252.27    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=80;Dels=0.01;FS=0.0;HRun=3;HaplotypeScore=2.21;MQ=59.16;MQ0=0;MQRankSum=-0.173;QD=15.09;ReadPosRankSum=-0.173;SNPEFF_AMINO_ACID_CHANGE=L140;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11174218_11175219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390673    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1282,0,1221
12    11183191    rs116737741    T    C    2538.65    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.15;DB;DP=178;Dels=0.0;FS=1.172;HRun=1;HaplotypeScore=5.3876;MQ=58.23;MQ0=0;MQRankSum=2.001;QD=14.26;ReadPosRankSum=0.339;SNPEFF_AMINO_ACID_CHANGE=S248;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:86,92:178:99:2569,0,2440
12    11183451    rs10743938    A    T    1047.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DB;DP=81;Dels=0.0;FS=4.468;HRun=0;HaplotypeScore=1.9962;MQ=55.65;MQ0=0;MQRankSum=0.052;QD=12.94;ReadPosRankSum=-0.119;SNPEFF_AMINO_ACID_CHANGE=L162M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:36,45:81:99:1078,0,1184
12    11183524    rs75159539    T    C    42.52    QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=2.514;DB;DP=117;Dels=0.0;FS=13.696;HRun=0;HaplotypeScore=1.4105;MQ=54.15;MQ0=1;MQRankSum=-7.387;QD=0.36;ReadPosRankSum=-3.716;SNPEFF_AMINO_ACID_CHANGE=L137;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:92,24:117:72.51:73,0,2959
12    11183576    rs72475488    T    C    435.54    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=144;Dels=0.0;FS=7.133;HRun=0;HaplotypeScore=3.8337;MQ=51.15;MQ0=1;MQRankSum=-7.58;QD=3.02;ReadPosRankSum=1.927;SNPEFF_AMINO_ACID_CHANGE=H120R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:100,44:144:99:466,0,3159
12    11183642    rs73049067    A    G    595.88    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.371;DB;DP=155;Dels=0.0;FS=5.167;HRun=1;HaplotypeScore=0.9469;MQ=53.95;MQ0=1;MQRankSum=-4.598;QD=3.84;ReadPosRankSum=-1.578;SNPEFF_AMINO_ACID_CHANGE=L98P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:114,41:155:99:626,0,3901
12    11183676    rs73049072    C    T    438.22    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.06;DB;DP=152;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.12;MQ0=1;MQRankSum=-5.0;QD=2.86;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=V87I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:115,37:152:99:468,0,3678
12    11183697    rs73049074    C    A    425.92    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=1.293;DB;DP=139;Dels=0.0;FS=0.892;HRun=1;HaplotypeScore=0.9734;MQ=55.84;MQ0=0;MQRankSum=-4.554;QD=3.06;ReadPosRankSum=2.496;SNPEFF_AMINO_ACID_CHANGE=V80L;SNPEFF_CODON_CHANGE=Gta/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:109,30:139:99:456,0,3580
12    11183708    rs80125932    T    C    439.85    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=3.804;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.726;MQ=55.6;MQ0=1;MQRankSum=-4.314;QD=3.19;ReadPosRankSum=1.53;SNPEFF_AMINO_ACID_CHANGE=Y76C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:107,30:138:99:470,0,3605
12    11183722    rs78562467    A    C    385.33    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=4.193;DB;DP=139;Dels=0.0;FS=3.504;HRun=0;HaplotypeScore=0.0;MQ=55.2;MQ0=3;MQRankSum=-4.896;QD=2.77;ReadPosRankSum=0.014;SNPEFF_AMINO_ACID_CHANGE=F71L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11182986_11184006;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390675    GT:AD:DP:GQ:PL    0/1:109,30:139:99:415,0,3609
12    11199734    rs2597984    T    C    453.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.706;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=0.835;QD=18.89;ReadPosRankSum=0.768;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535024    GT:AD:DP:GQ:PL    0/1:8,16:24:99:483,0,204
12    11215029    rs2708379    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535024    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
12    11215033    rs61912070    G    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535024    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
12    11244166    rs35720106    G    C    1754.80    HaplotypeScoreFilter13    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.853;DB;DP=197;Dels=0.0;FS=3.493;HRun=0;HaplotypeScore=17.6854;MQ=56.95;MQ0=1;MQRankSum=3.594;QD=8.91;ReadPosRankSum=-1.445;SNPEFF_AMINO_ACID_CHANGE=T221;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11243886_11244912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000531678    GT:AD:DP:GQ:PL    0/1:127,70:197:99:1785,0,3675
12    11244194    rs71443637    T    C    1613.95    HaplotypeScoreFilter13    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.058;DB;DP=186;Dels=0.0;FS=3.732;HRun=0;HaplotypeScore=28.152;MQ=56.98;MQ0=1;MQRankSum=1.637;QD=8.68;ReadPosRankSum=1.269;SNPEFF_AMINO_ACID_CHANGE=H212R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11243886_11244912;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531678    GT:AD:DP:GQ:PL    0/1:120,66:186:99:1644,0,3402
12    11244725    rs68157013    C    G    1545.78    HaplotypeScoreFilter13    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.578;DB;DP=113;Dels=0.0;FS=1.589;HRun=0;HaplotypeScore=22.9854;MQ=58.72;MQ0=0;MQRankSum=-0.145;QD=13.68;ReadPosRankSum=-0.528;SNPEFF_AMINO_ACID_CHANGE=W35S;SNPEFF_CODON_CHANGE=tGg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11243886_11244912;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531678    GT:AD:DP:GQ:PL    0/1:57,56:113:99:1576,0,1566
12    11338539    rs1650016    C    A    191.24    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.448;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.7356;MQ=52.81;MQ0=0;MQRankSum=-0.556;QD=11.25;ReadPosRankSum=-0.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334266    GT:AD:DP:GQ:PL    0/1:8,9:17:99:221,0,137
12    11338555    rs1669409    A    T    151.17    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=52.81;MQ0=0;MQRankSum=-0.772;QD=8.89;ReadPosRankSum=0.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334266    GT:AD:DP:GQ:PL    0/1:7,8:17:99:181,0,120
12    11338613    rs1650017    C    G    108.36    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.38;MQ0=0;MQRankSum=-0.119;QD=4.17;ReadPosRankSum=-0.537;SNPEFF_AMINO_ACID_CHANGE=A311P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11338599_11339543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334266    GT:AD:DP:GQ:PL    0/1:15,11:26:99:138,0,510
12    11338614    rs1669411    A    G    138.91    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.38;MQ0=0;MQRankSum=-0.06;QD=5.34;ReadPosRankSum=-0.716;SNPEFF_AMINO_ACID_CHANGE=N310;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11338599_11339543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R42;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334266    GT:AD:DP:GQ:PL    0/1:15,11:26:99:169,0,479
12    11338781    rs1669413    C    A    397.11    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=36;Dels=0.0;FS=1.321;HRun=1;HaplotypeScore=0.8941;MQ=58.18;MQ0=0;MQRankSum=0.99;QD=11.03;ReadPosRankSum=-0.276;SNPEFF_AMINO_ACID_CHANGE=G255W;SNPEFF_CODON_CHANGE=Ggg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11338599_11339543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334266    GT:AD:DP:GQ:PL    0/1:22,14:36:99:427,0,757
12    11338957    rs5020531    A    G    1087.91    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=72;Dels=0.0;FS=0.898;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.418;QD=15.11;ReadPosRankSum=-0.667;SNPEFF_AMINO_ACID_CHANGE=F196S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11338599_11339543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334266    GT:AD:DP:GQ:PL    0/1:33,39:72:99:1118,0,1006
12    11338983    rs1650019    T    C    1270.05    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.894;DB;DP=90;Dels=0.0;FS=0.786;HRun=0;HaplotypeScore=0.7887;MQ=59.74;MQ0=0;MQRankSum=-1.449;QD=14.11;ReadPosRankSum=0.53;SNPEFF_AMINO_ACID_CHANGE=L187;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11338599_11339543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R42;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334266    GT:AD:DP:GQ:PL    0/1:44,46:90:99:1300,0,1397
12    11339020    rs35969491    T    A    1255.80    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.288;DB;DP=80;Dels=0.0;FS=2.936;HRun=1;HaplotypeScore=0.9832;MQ=59.71;MQ0=0;MQRankSum=-0.024;QD=15.7;ReadPosRankSum=-0.756;SNPEFF_AMINO_ACID_CHANGE=Y175F;SNPEFF_CODON_CHANGE=tAt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11338599_11339543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAS2R42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334266    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1286,0,1227
12    11420333    rs3842295    AG    A    4307.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;FS=0.0;HRun=3;HaplotypeScore=666.8255;IndelType=D;MQ=56.2;MQ0=0;QD=34.19;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_11420109_11420335;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000381842    GT:AD:DP:GQ:PL    1/1:15,111:125:99:4308,352,0
12    11420375    rs11054201    G    A    4134.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5585;MQ=55.28;MQ0=1;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=P228S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11420337_11420452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381842    GT:AD:DP:GQ:PL    1/1:1,126:128:99:4135,322,0
12    11420454    rs11054202    T    C    436.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.2021;MQ=52.95;MQ0=1;MQRankSum=0.286;QD=16.78;ReadPosRankSum=-0.971;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000381842    GT:AD:DP:GQ:PL    1/1:2,23:26:42.07:469,42,0
12    11420517    rs12368171    C    T    217.20    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=2.501;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6109;MQ=44.98;MQ0=1;MQRankSum=-1.728;QD=3.06;ReadPosRankSum=-4.747;SNPEFF_AMINO_ACID_CHANGE=P201;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11420516_11420767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538488    GT:AD:DP:GQ:PL    0/1:44,27:71:99:247,0,787
12    11421093    rs113719692    T    TGGG    1203.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=55.0626;IndelType=I;MQ=44.51;MQ0=5;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381842    GT:AD:DP:GQ:PL    1/1:0,33:19:57.19:1246,57,0
12    11421522    rs59152757    C    T    1376.87    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.202;DB;DP=102;Dels=0.0;FS=4.982;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-1.424;QD=13.5;ReadPosRankSum=0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381842    GT:AD:DP:GQ:PL    0/1:53,49:102:99:1407,0,1693
12    11421721    rs1968355    A    G    1586.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381842    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1620,120,0
12    11461292    rs1052808    C    G    933.47    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.269;DB;DP=84;Dels=0.0;FS=3.135;HRun=1;HaplotypeScore=4.8289;MQ=59.43;MQ0=0;MQRankSum=-1.383;QD=11.11;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=A140P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11461161_11461375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445719    GT:AD:DP:GQ:PL    0/1:52,32:84:99:963,0,1640
12    11461470    rs1052807    A    G    1411.95    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=3.201;DB;DP=119;Dels=0.0;FS=0.767;HRun=0;HaplotypeScore=1.8614;MQ=56.76;MQ0=0;MQRankSum=-1.151;QD=11.87;ReadPosRankSum=-0.416;SNPEFF_AMINO_ACID_CHANGE=G149;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11461155_11461816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279575    GT:AD:DP:GQ:PL    0/1:58,59:119:99:1442,0,1566
12    11461553    rs11054244    T    C    130.36    QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.319;DB;DP=124;Dels=0.0;FS=7.877;HRun=1;HaplotypeScore=1.4105;MQ=58.6;MQ0=0;MQRankSum=0.71;QD=1.05;ReadPosRankSum=-1.468;SNPEFF_AMINO_ACID_CHANGE=R122G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11461155_11461816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279575    GT:AD:DP:GQ:PL    0/1:105,19:124:99:160,0,3193
12    11461570    rs59189129    G    T    381.34    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=131;Dels=0.0;FS=2.999;HRun=0;HaplotypeScore=7.9946;MQ=55.9;MQ0=2;MQRankSum=-0.036;QD=2.91;ReadPosRankSum=-1.819;SNPEFF_AMINO_ACID_CHANGE=P116H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11461155_11461816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279575    GT:AD:DP:GQ:PL    0/1:98,28:131:99:411,0,2640
12    11461580    rs12303607    T    G    375.87    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=4.125;DB;DP=133;Dels=0.0;FS=0.898;HRun=4;HaplotypeScore=9.1999;MQ=55.78;MQ0=2;MQRankSum=0.003;QD=2.83;ReadPosRankSum=-2.66;SNPEFF_AMINO_ACID_CHANGE=T113P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11461155_11461816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279575    GT:AD:DP:GQ:PL    0/1:102,31:133:99:406,0,2158
12    11461596    rs59021567    T    G    223.91    QDFilter2    AB=0.845;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=155;Dels=0.0;FS=3.226;HRun=0;HaplotypeScore=1.4725;MQ=54.44;MQ0=9;MQRankSum=1.678;QD=1.44;ReadPosRankSum=-4.914;SNPEFF_AMINO_ACID_CHANGE=G107;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11461155_11461816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279575    GT:AD:DP:GQ:PL    0/1:131,24:155:99:254,0,3251
12    11461706    rs12308381    G    T    317.73    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.624;DB;DP=155;Dels=0.0;FS=51.259;HRun=0;HaplotypeScore=11.6416;MQ=56.94;MQ0=2;MQRankSum=-0.379;QD=2.05;ReadPosRankSum=-2.765;SNPEFF_AMINO_ACID_CHANGE=P71T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11461155_11461816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279575    GT:AD:DP:GQ:PL    0/1:122,33:155:99:348,0,3415
12    11461836    rs6488386    T    C    1256.44    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=106;Dels=0.0;FS=2.02;HRun=0;HaplotypeScore=0.9999;MQ=54.27;MQ0=9;MQRankSum=0.192;QD=11.85;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279575    GT:AD:DP:GQ:PL    0/1:44,62:106:99:1286,0,1281
12    11462275    rs1834857    A    G    1416.74    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.018;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6852;MQ=60.0;MQ0=0;MQRankSum=-0.223;QD=15.92;ReadPosRankSum=0.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279575    GT:AD:DP:GQ:PL    0/1:39,50:89:99:1447,0,1211
12    11506211    rs76504934    A    C    1106.29    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=0.853;DB;DP=97;Dels=0.0;FS=4.034;HRun=0;HaplotypeScore=3.178;MQ=41.26;MQ0=2;MQRankSum=-0.175;QD=11.41;ReadPosRankSum=0.074;SNPEFF_AMINO_ACID_CHANGE=S123A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11506008_11506264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545626    GT:AD:DP:GQ:PL    0/1:55,41:97:99:1136,0,1467
12    11506281    rs61930108    T    C    598.09    MQFilter40    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=83;Dels=0.0;FS=9.502;HRun=2;HaplotypeScore=3.4205;MQ=38.19;MQ0=12;MQRankSum=3.352;QD=7.21;ReadPosRankSum=0.58;SNPEFF_AMINO_ACID_CHANGE=Q119;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11506008_11506324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    0/1:54,29:83:99:628,0,1000
12    11506347    .    G    A    271.42    MQFilter40    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.238;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.3698;MQ=18.01;MQ0=25;MQRankSum=2.536;QD=5.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    0/1:21,27:48:40.73:301,0,41
12    11506403    rs113897264    A    G    276.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.0212;MQ=18.27;MQ0=17;QD=7.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    1/1:0,34:36:30.01:309,30,0
12    11506473    rs61930109    C    G    707.26    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7998;MQ=27.1;MQ0=21;MQRankSum=-0.975;QD=12.41;ReadPosRankSum=-0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    1/1:2,55:57:66.07:740,66,0
12    11506583    rs111877208    A    G    1523.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.5575;MQ=29.89;MQ0=24;QD=16.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    1/1:0,93:93:99:1557,141,0
12    11506669    rs74903687    G    T    514.36    MQFilter40    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=152;Dels=0.0;FS=3.662;HRun=1;HaplotypeScore=2.5042;MQ=39.5;MQ0=13;MQRankSum=-3.531;QD=3.38;ReadPosRankSum=1.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    0/1:107,45:152:99:544,0,2258
12    11506893    rs10845341    C    T    2454.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.4715;MQ=52.91;MQ0=0;QD=29.22;SNPEFF_AMINO_ACID_CHANGE=Q48;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11506724_11506936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    1/1:0,83:84:99:2488,199,0
12    11507074    rs10459058    A    C    154.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=54.07;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:188,15,0
12    11507267    rs2272509    A    G    175.06    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=21.88;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500254    GT:AD:DP:GQ:PL    0/1:1,7:8:20.69:205,0,21
12    11546192    rs10845349    G    A    647    MQFilter40    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.079;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=33.68;MQ0=26;MQRankSum=0.152;QD=5.44;ReadPosRankSum=-0.641;SNPEFF_AMINO_ACID_CHANGE=P274S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11545728_11546911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389362    GT:AD:DP:GQ:PL    0/1:75,44:119:99:677,0,1147
12    11546686    rs76832300    C    T    483.61    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=3.749;DB;DP=188;Dels=0.0;FS=0.813;HRun=2;HaplotypeScore=10.294;MQ=41.13;MQ0=14;MQRankSum=-5.898;QD=2.57;ReadPosRankSum=-0.397;SNPEFF_AMINO_ACID_CHANGE=R109Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11545728_11546911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389362    GT:AD:DP:GQ:PL    0/1:144,43:188:99:514,0,2849
12    11546742    .    T    C    396.45    MQFilter40    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.507;DP=182;Dels=0.0;FS=4.152;HRun=2;HaplotypeScore=4.2375;MQ=32.99;MQ0=26;MQRankSum=-3.49;QD=2.18;ReadPosRankSum=0.287;SNPEFF_AMINO_ACID_CHANGE=Q90;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11545728_11546911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389362    GT:AD:DP:GQ:PL    0/1:135,47:182:99:426,0,2836
12    11546781    rs71443675    C    T    645.46    MQFilter40    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.575;DB;DP=147;Dels=0.01;FS=4.439;HRun=3;HaplotypeScore=9.6386;MQ=29.86;MQ0=28;MQRankSum=1.829;QD=4.36;ReadPosRankSum=-0.702;SNPEFF_AMINO_ACID_CHANGE=K77;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11545728_11546911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389362    GT:AD:DP:GQ:PL    0/1:100,45:147:99:675,0,1281
12    11803220    rs2856305    A    C    181.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:215,18,0
12    11803228    rs2541135    A    G    115.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
12    11903751    rs149457743    TGC    T    768.50    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.369;DB;DP=57;FS=64.229;HRun=0;HaplotypeScore=390.7256;IndelType=D;MQ=43.25;MQ0=0;MQRankSum=-2.713;QD=13.48;ReadPosRankSum=-1.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    0/1:38,11:57:99:808,0,874
12    11903956    rs117214299    A    G    325.72    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.25;MQ0=0;MQRankSum=2.188;QD=17.14;ReadPosRankSum=-0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    0/1:8,11:19:99:356,0,261
12    11904983    rs2724600    A    G    265.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:298,24,0
12    11905668    rs2724601    G    A    82.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
12    11992168    rs11611479    G    A    698.98    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.196;DB;DP=50;Dels=0.0;FS=6.121;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.505;QD=13.98;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=T58;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_11992074_11992238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545027    GT:AD:DP:GQ:PL    0/1:24,26:50:99:729,0,698
12    12006544    rs17210957    G    A    219.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.848;QD=9.13;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    0/1:15,9:24:99:249,0,503
12    12023023    rs2071150    C    G    214.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
12    12044195    rs1058028    T    C    82.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.76;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396373    GT:AD:DP:GQ:PL    1/1:0,6:6:12:115,12,0
12    12232858    rs4763777    C    G    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461264    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:70,0,28
12    12240199    rs879732    C    T    2026.16    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=2.358;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.6;MQ0=0;MQRankSum=-0.657;QD=17.77;ReadPosRankSum=1.213;SNPEFF_AMINO_ACID_CHANGE=Y162;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_12240147_12240320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266434    GT:AD:DP:GQ:PL    0/1:46,68:114:99:2056,0,1335
12    12247360    rs1641728    A    G    318.66    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.085;QD=24.51;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266434    GT:AD:DP:GQ:PL    0/1:3,10:13:87.51:349,0,88
12    12251804    rs3741793    G    C    96.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.368;QD=10.75;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266434    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,142
12    12252078    rs1797647    T    G    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396369    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:71,0,30
12    12264530    rs4763272    G    A    106.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.73;MQ0=1;MQRankSum=-0.55;QD=13.26;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261349    GT:AD:DP:GQ:PL    0/1:4,4:8:89.06:136,0,89
12    12265118    rs111468576    CA    C    304.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=8;HaplotypeScore=37.5816;IndelType=D;MQ=49.03;MQ0=0;QD=20.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261349    GT:AD:DP:GQ:PL    1/1:3,12:15:36.05:347,36,0
12    12278468    rs2302684    A    T    34.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.8;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396369    GT:AD:DP:GQ:PL    0/1:4,2:6:64.82:65,0,146
12    12291638    rs7980903    C    T    206.53    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.78;DB;DP=15;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.663;QD=13.77;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396369    GT:AD:DP:GQ:PL    0/1:7,8:15:99:237,0,241
12    12301898    rs2302685    C    T    1367.14    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=84;Dels=0.0;FS=9.423;HRun=0;HaplotypeScore=0.6651;MQ=59.73;MQ0=0;MQRankSum=0.69;QD=16.28;ReadPosRankSum=-0.836;SNPEFF_AMINO_ACID_CHANGE=V1062I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_12301876_12302087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261349    GT:AD:DP:GQ:PL    0/1:39,45:84:99:1397,0,1109
12    12303637    rs7979485    C    T    300.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261349    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:333,24,0
12    12482803    rs4328285    A    G    30.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.38;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355566    GT:AD:DP:GQ:PL    1/1:0,2:2:6:62,6,0
12    12483275    rs1861676    G    A    1944.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=L247;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_12482216_12483892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355566    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1977,153,0
12    12483713    rs4763282    A    G    1411.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_12482216_12483892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355566    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1445,111,0
12    12483927    rs4763818    G    A    534.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355566    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:568,42,0
12    12495959    rs3741800    C    T    910.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=58.99;MQ0=0;QD=39.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543314    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:943,69,0
12    12510097    rs10772552    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOH12CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542728    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    12618427    rs3751261    C    T    115.36    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=6.79;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOH12CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298571    GT:AD:DP:GQ:PL    0/1:12,5:17:99:145,0,390
12    12618715    rs967648    T    C    832.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOH12CR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298571    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:865,75,0
12    12632950    rs10845554    G    C    74.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.99;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228862    GT:AD:DP:GQ:PL    0/1:2,3:5:68.60:105,0,69
12    12639809    rs4763833    C    T    175.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228862    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
12    12790737    rs10845599    G    A    174.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=17.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CREBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540224    GT:AD:DP:GQ:PL    0/1:4,6:10:99:205,0,139
12    12814818    rs4763862    C    T    1985.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=V189I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_12813995_12815404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332427    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2019,150,0
12    12870695    rs34330    T    C    238.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9664;MQ=56.07;MQ0=0;MQRankSum=1.096;QD=14.05;ReadPosRankSum=0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDKN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535674    GT:AD:DP:GQ:PL    0/1:8,8:17:99:269,0,184
12    12938793    rs7297140    G    A    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.12;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326765    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,108
12    12966967    rs7978823    A    G    280.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=15.6;ReadPosRankSum=-1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352940    GT:AD:DP:GQ:PL    0/1:8,10:18:99:311,0,288
12    12977400    rs1010878    G    A    171.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.313;QD=10.7;ReadPosRankSum=-0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392155    GT:AD:DP:GQ:PL    0/1:8,8:16:99:201,0,216
12    13028653    rs10845659    A    G    1615.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=31.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-392P7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424500    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1649,129,0
12    13029069    rs56230410    C    CAA    349.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=22;HaplotypeScore=333.9256;IndelType=I;MQ=39.42;MQ0=0;QD=9.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-392P7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424500    GT:AD:DP:GQ:PL    1/1:22,6:32:52.05:391,52,0
12    13029100    rs11055121    G    C    67.15    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.899;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=35.56;MQ0=0;MQRankSum=0.093;QD=2.92;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-392P7.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424500    GT:AD:DP:GQ:PL    0/1:13,10:23:89.16:97,0,89
12    13095469    rs4763307    G    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228887    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    13102605    rs4630382    G    A    2160.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.01;MQ0=0;QD=32.73;SNPEFF_AMINO_ACID_CHANGE=D238;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_13102424_13103318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC5D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228887    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2193,166,0
12    13103469    rs2024516    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541128    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    13128022    rs73068796    A    G    65.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.18;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540916    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:96,0,68
12    13128058    rs13479    T    C    130.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540916    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
12    13142174    rs850918    C    G    1064.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.798;DB;DP=95;Dels=0.0;FS=2.816;HRun=0;HaplotypeScore=2.7652;MQ=60.0;MQ0=0;MQRankSum=0.989;QD=11.2;ReadPosRankSum=-0.432;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000014930    GT:AD:DP:GQ:PL    0/1:47,47:95:99:1094,0,1365
12    13153773    rs1291364    T    C    55.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.53;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000014930    GT:AD:DP:GQ:PL    1/1:0,3:3:9:88,9,0
12    13154790    rs1291363    G    C    729.74    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.59;DB;DP=63;Dels=0.0;FS=11.091;HRun=0;HaplotypeScore=1.8237;MQ=60.0;MQ0=0;MQRankSum=0.285;QD=11.4;ReadPosRankSum=0.049;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000014930    GT:AD:DP:GQ:PL    0/1:36,27:63:99:760,0,1166
12    13154911    rs1291362    A    G    1155.92    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.033;DB;DP=86;Dels=0.0;FS=4.112;HRun=0;HaplotypeScore=0.8941;MQ=59.19;MQ0=0;MQRankSum=-0.136;QD=13.44;ReadPosRankSum=-0.823;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000014930    GT:AD:DP:GQ:PL    0/1:45,41:86:99:1186,0,1534
12    13155166    rs1291361    G    T    759.33    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DB;DP=67;Dels=0.0;FS=15.527;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.792;QD=11.33;ReadPosRankSum=-0.444;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000014930    GT:AD:DP:GQ:PL    0/1:37,30:67:99:789,0,1282
12    13155339    rs3825272    C    A    52.88    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.29;ReadPosRankSum=-0.296;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000014930    GT:AD:DP:GQ:PL    0/1:7,3:10:82.87:83,0,221
12    13211212    rs6488582    G    A    537.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=38.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1467;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000197268    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:570,42,0
12    13214537    rs3741818    A    G    715.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9996;MQ=56.62;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=V187;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_13214509_13214697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1467;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000197268    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:749,57,0
12    13215685    rs2200498    C    A    1204.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1467;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000197268    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1238,93,0
12    13221606    rs1386005    T    C    2241.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=D219;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_13221564_13221645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1467;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537625    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2275,169,0
12    13248445    rs2291396    C    A    1179.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324458    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1213,90,0
12    13366504    rs34412222    G    A    829.06    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DB;DP=55;Dels=0.0;FS=9.455;HRun=1;HaplotypeScore=0.9578;MQ=59.58;MQ0=0;MQRankSum=0.379;QD=15.07;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=S57N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_13366413_13366509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256951    GT:AD:DP:GQ:PL    0/1:29,26:55:99:859,0,999
12    13366599    rs2277395    C    T    1724.11    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=117;Dels=0.0;FS=1.553;HRun=1;HaplotypeScore=1.3123;MQ=59.8;MQ0=0;MQRankSum=-0.037;QD=14.74;ReadPosRankSum=1.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535134    GT:AD:DP:GQ:PL    0/1:59,58:117:99:1754,0,1748
12    13526328    rs17821405    G    T    1003.70    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.427;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.075;QD=13.94;ReadPosRankSum=-0.017;SNPEFF_AMINO_ACID_CHANGE=A76E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_13524023_13526372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318426    GT:AD:DP:GQ:PL    0/1:39,32:72:99:1034,0,1209
12    13529068    rs4763975    A    G    558.75    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=47;Dels=0.0;FS=1.514;HRun=0;HaplotypeScore=1.8311;MQ=60.0;MQ0=0;MQRankSum=-0.075;QD=11.89;ReadPosRankSum=-0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531049    GT:AD:DP:GQ:PL    0/1:25,22:47:99:589,0,788
12    13716638    rs1806191    G    A    1011.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_AMINO_ACID_CHANGE=H1178;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_13714144_13717573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    1/1:0,33:33:78.25:1045,78,0
12    13720043    rs3026160    G    A    798.80    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.835;DB;DP=49;Dels=0.0;FS=1.109;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.331;QD=16.3;ReadPosRankSum=2.154;SNPEFF_AMINO_ACID_CHANGE=C838;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_13719959_13720197;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    0/1:23,26:49:99:829,0,665
12    13720272    rs4764010    A    G    159.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=22.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:192,15,0
12    13723127    rs1806194    T    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    13768354    rs1468845    C    T    2629.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    1/1:0,68:69:99:2663,199,0
12    13769664    rs1805199    T    C    693.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:726,60,0
12    13769831    rs78823315    A    G    38.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.78;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:68,0,30
12    14018777    rs7301328    G    C    1644.16    PASS    AB=0.398;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.337;DB;DP=113;Dels=0.0;FS=5.156;HRun=0;HaplotypeScore=1.6643;MQ=59.84;MQ0=0;MQRankSum=-2.196;QD=14.55;ReadPosRankSum=-2.12;SNPEFF_AMINO_ACID_CHANGE=P122;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14018732_14019160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    0/1:45,68:113:99:1674,0,1374
12    14019128    rs34315573    C    T    350.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.458;DB;DP=28;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=12.5;ReadPosRankSum=0.85;SNPEFF_AMINO_ACID_CHANGE=A5;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14018732_14019160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279593    GT:AD:DP:GQ:PL    0/1:14,14:28:99:380,0,409
12    14576743    rs4764087    A    G    413.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261168    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:446,33,0
12    14577892    rs2231909    A    T    825.64    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=55;Dels=0.0;FS=1.064;HRun=1;HaplotypeScore=0.5784;MQ=59.66;MQ0=0;MQRankSum=0.044;QD=15.01;ReadPosRankSum=0.252;SNPEFF_AMINO_ACID_CHANGE=N348I;SNPEFF_CODON_CHANGE=aAt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14576843_14578407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261168    GT:AD:DP:GQ:PL    0/1:24,31:55:99:856,0,788
12    14578519    rs6488685    G    A    546.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9399;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396279    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:580,42,0
12    14579235    rs11055969    A    C    265.17    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.862;DB;DP=24;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.073;QD=11.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396279    GT:AD:DP:GQ:PL    0/1:15,9:24:99:295,0,533
12    14587301    rs3213764    A    G    760.64    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.777;DB;DP=83;Dels=0.0;FS=9.524;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.334;QD=9.16;ReadPosRankSum=-1.925;SNPEFF_AMINO_ACID_CHANGE=K529R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14587274_14587357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536444    GT:AD:DP:GQ:PL    0/1:52,31:83:99:791,0,1700
12    14591220    rs4479040    G    A    372.26    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.775;QD=19.59;ReadPosRankSum=0.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545723    GT:AD:DP:GQ:PL    0/1:8,11:19:99:402,0,223
12    14599904    rs71438315    C    CT    918.92    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.815;DB;DP=74;FS=1.71;HRun=14;HaplotypeScore=333.1605;IndelType=I;MQ=56.32;MQ0=0;MQRankSum=0.39;QD=12.42;ReadPosRankSum=-0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261168    GT:AD:DP:GQ:PL    0/1:25,44:74:5.73:957,0,6
12    14610439    rs962504    A    G    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261168    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:72,0,30
12    14628705    rs7298275    A    G    118.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261168    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
12    14628773    rs7313259    C    T    139.13    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=10.7;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261168    GT:AD:DP:GQ:PL    0/1:7,6:13:99:169,0,259
12    14631111    rs2302886    T    C    72.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.49;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535179    GT:AD:DP:GQ:PL    0/1:2,3:5:63.69:102,0,64
12    14649196    rs61754409    A    G    329.34    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.762;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.084;QD=10.98;ReadPosRankSum=0.293;SNPEFF_AMINO_ACID_CHANGE=T1103;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14649165_14649277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATF7IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536444    GT:AD:DP:GQ:PL    0/1:17,13:30:99:359,0,539
12    14656768    rs1600    G    C    1036.71    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.758;DB;DP=77;Dels=0.0;FS=4.444;HRun=1;HaplotypeScore=1.8924;MQ=59.7;MQ0=0;MQRankSum=-0.239;QD=13.46;ReadPosRankSum=-0.596;SNPEFF_AMINO_ACID_CHANGE=P534A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14656595_14656888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLBD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240617    GT:AD:DP:GQ:PL    0/1:39,38:77:99:1067,0,1097
12    14660184    rs3827886    T    C    111.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541618    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
12    14664595    rs10846013    A    G    884.14    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=64;Dels=0.0;FS=2.178;HRun=0;HaplotypeScore=0.9867;MQ=59.71;MQ0=0;MQRankSum=-0.2;QD=13.81;ReadPosRankSum=-0.489;SNPEFF_AMINO_ACID_CHANGE=L299;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14664445_14664645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLBD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240617    GT:AD:DP:GQ:PL    0/1:34,30:64:99:914,0,995
12    14688644    rs7957558    C    T    2664.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=36.51;SNPEFF_AMINO_ACID_CHANGE=V265I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14688593_14688737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLBD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240617    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2698,196,0
12    14689449    rs35754761    T    G    628.29    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.866;DB;DP=37;Dels=0.0;FS=3.726;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.866;QD=16.98;ReadPosRankSum=-0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540572    GT:AD:DP:GQ:PL    0/1:15,22:37:99:658,0,417
12    14689451    rs1345531    T    C    409.53    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=39;Dels=0.0;FS=5.893;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.499;QD=10.5;ReadPosRankSum=0.029;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540572    GT:AD:DP:GQ:PL    0/1:22,17:39:99:440,0,675
12    14694993    rs1862014    G    C    214.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240617    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
12    14769468    rs1558795    G    A    1547.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1581,123,0
12    14774249    rs10846030    G    C    814.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:0,25:25:72.20:847,72,0
12    14774849    rs7302418    T    A    444.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:478,36,0
12    14781503    rs4764105    A    T    561.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:594,45,0
12    14781678    rs3217210    G    GA    546.67    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.675;DB;DP=42;FS=15.415;HRun=9;HaplotypeScore=94.2331;IndelType=I;MQ=61.02;MQ0=0;MQRankSum=0.69;QD=13.02;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    0/1:20,22:42:99:586,0,306
12    14794062    rs10772800    G    A    810.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=I674;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14794016_14794153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:843,63,0
12    14804994    rs7313027    G    C    1101.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1135,84,0
12    14822855    rs7314345    G    A    192.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535803    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:225,18,0
12    14827463    rs3217157    AATC    A    1291.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=120.4814;IndelType=D;MQ=55.27;MQ0=0;QD=46.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:1,27:28:81.28:1334,81,0
12    14829702    rs117875898    G    T    115.90    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.18;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    0/1:1,4:5:17.45:146,0,17
12    14829893    rs1420635    A    C    1447.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.59;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=F281L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14829788_14829905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1480,117,0
12    14834421    rs66986132    GA    G    876.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=5;HaplotypeScore=202.8788;IndelType=D;MQ=59.26;MQ0=0;QD=26.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:2,31:33:86.21:918,86,0
12    14836358    rs1420632    A    G    115.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261170    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
12    14923522    rs12818627    T    C    88.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIST4H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358064    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
12    14924028    rs16910259    A    G    345.38    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=36;Dels=0.0;FS=8.217;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.219;QD=9.59;ReadPosRankSum=0.657;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2AFJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228929    GT:AD:DP:GQ:PL    0/1:22,14:36:99:375,0,647
12    14927825    rs6645    C    G    349.22    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.145;DB;DP=30;Dels=0.0;FS=6.794;HRun=0;HaplotypeScore=0.8667;MQ=59.23;MQ0=0;MQRankSum=-1.06;QD=11.64;ReadPosRankSum=1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2AFJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228929    GT:AD:DP:GQ:PL    0/1:16,14:30:99:379,0,555
12    14927994    rs2195199    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2AFJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228929    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    14928195    rs66661591    T    C    87.59    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=6.264;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.96;ReadPosRankSum=-2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2AFJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228929    GT:AD:DP:GQ:PL    0/1:7,4:11:99:118,0,220
12    14947292    rs17834449    C    T    294.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.083;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.028;QD=11.79;ReadPosRankSum=0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261167    GT:AD:DP:GQ:PL    0/1:15,10:25:99:325,0,547
12    14947675    rs34868934    TA    T    355.09    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=3.845;DB;DP=31;FS=0.0;HRun=11;HaplotypeScore=100.4499;IndelType=D;MQ=60.69;MQ0=0;MQRankSum=-0.802;QD=11.45;ReadPosRankSum=-1.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535328    GT:AD:DP:GQ:PL    0/1:11,20:31:99:394,0,144
12    14949720    rs71438330    C    CA    730.94    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.315;DB;DP=59;FS=6.505;HRun=10;HaplotypeScore=140.4944;IndelType=I;MQ=59.05;MQ0=0;MQRankSum=0.831;QD=12.39;ReadPosRankSum=0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535328    GT:AD:DP:GQ:PL    0/1:28,30:59:99:770,0,413
12    14959391    rs2241221    T    C    1091.41    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.773;DB;DP=87;Dels=0.0;FS=23.176;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.882;QD=12.54;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=K75R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14957584_14959630;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf69;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316048    GT:AD:DP:GQ:PL    0/1:46,41:87:99:1121,0,1521
12    14975721    rs11610238    C    T    210.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228936    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
12    14976063    rs7304054    A    G    543.17    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.252;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.205;QD=12.34;ReadPosRankSum=0.962;SNPEFF_AMINO_ACID_CHANGE=K65R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14975846_14977349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330828    GT:AD:DP:GQ:PL    0/1:23,21:44:99:573,0,772
12    14976178    rs7307438    T    A    833.37    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=3.56;DB;DP=62;Dels=0.0;FS=9.652;HRun=2;HaplotypeScore=0.8941;MQ=59.63;MQ0=0;MQRankSum=-0.888;QD=13.44;ReadPosRankSum=-0.123;SNPEFF_AMINO_ACID_CHANGE=N103K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14975846_14977349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330828    GT:AD:DP:GQ:PL    0/1:32,30:62:99:863,0,1010
12    14976417    rs139293175    CTA    C    572.97    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=4.049;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=129.4114;IndelType=D;MQ=60.51;MQ0=0;MQRankSum=0.869;QD=13.64;ReadPosRankSum=-1.777;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_14975846_14977349;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf60;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000330828    GT:AD:DP:GQ:PL    0/1:26,16:42:99:612,0,1327
12    14976553    rs17761825    G    C    301.55    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.986;DB;DP=27;Dels=0.0;FS=6.085;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=11.17;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=A228;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14975846_14977349;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf60;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330828    GT:AD:DP:GQ:PL    0/1:16,11:27:99:332,0,481
12    14993439    rs11276    C    T    1681.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=D248N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14993294_14994087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420600    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1714,129,0
12    14993608    rs3088189    G    A    1111.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.28;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=L191;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14993294_14994087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420600    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1144,87,0
12    14993854    rs1861698    A    G    2419.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.72;MQ0=0;QD=36.1;SNPEFF_AMINO_ACID_CHANGE=Y109;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_14993294_14994087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ART4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420600    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2452,181,0
12    15034996    rs2430735    T    A    1352.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=36.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507170    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1386,102,0
12    15035081    rs4236    T    C    3222.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5317;MQ=59.32;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=T102A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_15034115_15035214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539261    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3256,253,0
12    15037187    rs68193658    T    TA    857.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;DB;DP=35;FS=0.0;HRun=10;HaplotypeScore=140.7483;IndelType=I;MQ=57.27;MQ0=0;MQRankSum=1.271;QD=24.5;ReadPosRankSum=0.924;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228938    GT:AD:DP:GQ:PL    1/1:6,29:35:69.94:900,70,0
12    15038788    rs1800801    C    T    571.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527783    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:604,45,0
12    15090762    rs3748296    G    C    1374.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228945    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1407,105,0
12    15090837    rs3748297    A    G    3615.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.705;DB;DP=110;Dels=0.0;FS=3.066;HRun=0;HaplotypeScore=0.8941;MQ=59.79;MQ0=0;MQRankSum=-1.734;QD=32.87;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228945    GT:AD:DP:GQ:PL    1/1:2,108:110:99:3615,229,0
12    15091221    rs11432737    A    AT    1964.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=103.4089;IndelType=I;MQ=61.0;MQ0=0;QD=45.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228945    GT:AD:DP:GQ:PL    1/1:1,42:43:99:2007,126,0
12    15095707    rs10772822    T    C    459.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.347;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.504;QD=28.71;ReadPosRankSum=-0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535676    GT:AD:DP:GQ:PL    1/1:1,15:16:5.82:491,6,0
12    15095804    rs10772823    A    G    214.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535676    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:247,21,0
12    15097497    rs7301801    C    G    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535676    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    15100683    rs2075265    C    T    212.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541380    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
12    15102681    rs28683560    G    C    630.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542276    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:663,48,0
12    15103605    rs2430711    A    G    2653.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=D14;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_15103466_15103658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGDIB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228945    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2687,205,0
12    15131234    rs12832328    T    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266395    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
12    15131995    rs2233623    C    A    128.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266395    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
12    15273932    rs2247574    C    T    497.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393736    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:531,39,0
12    15273957    rs2247568    A    G    530.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393736    GT:AD:DP:GQ:PL    1/1:0,20:20:42.13:563,42,0
12    15652220    rs2193165    A    G    217.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:251,21,0
12    15652330    rs4764197    T    C    1376.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9705;MQ=59.36;MQ0=0;QD=38.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1409,105,0
12    15652636    rs35104777    AAT    A    180.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=25.5835;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=22.56;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:2,6:8:81.18:220,0,81
12    15656832    rs4764199    T    A    1367.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1400,105,0
12    15661441    rs888163    A    G    68.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
12    15669737    rs1050646    T    C    792.92    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=3.176;DB;DP=59;Dels=0.0;FS=5.403;HRun=2;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=2.054;QD=13.44;ReadPosRankSum=0.159;SNPEFF_AMINO_ACID_CHANGE=G542;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_15669697_15669890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:30,29:59:99:823,0,846
12    15673103    rs2302688    C    T    719.78    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.253;DB;DP=50;Dels=0.0;FS=3.729;HRun=4;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-2.161;QD=14.4;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543886    GT:AD:DP:GQ:PL    0/1:23,27:50:99:750,0,748
12    15677992    rs960666    A    T    92.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.61;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:4,4:8:99:123,0,139
12    15679120    rs6488782    C    A    910.20    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=3.011;DB;DP=57;Dels=0.0;FS=3.997;HRun=0;HaplotypeScore=2.5114;MQ=59.6;MQ0=0;MQRankSum=1.438;QD=15.97;ReadPosRankSum=-1.492;SNPEFF_AMINO_ACID_CHANGE=G696;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_15679076_15679196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:27,29:57:99:940,0,604
12    15679208    rs7134888    G    A    652.67    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.451;QD=13.32;ReadPosRankSum=-0.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:26,23:49:99:683,0,846
12    15699772    rs7301461    C    G    30.71    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.39;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:5,2:7:60.70:61,0,178
12    15702007    rs7132826    C    T    1117.25    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;MQRankSum=0.052;QD=15.52;ReadPosRankSum=0.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:35,36:72:99:1147,0,1162
12    15704425    rs1012674    G    T    543.25    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=35;Dels=0.0;FS=9.834;HRun=1;HaplotypeScore=0.9973;MQ=59.47;MQ0=0;MQRankSum=0.583;QD=15.52;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:15,20:35:99:573,0,475
12    15710270    rs10846209    C    G    71.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.28;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,146
12    15718345    .    T    C    44.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.95;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
12    15722555    rs10846212    A    G    74.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.97;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:105,0,66
12    15731724    rs5796639    T    TG    438.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=52.8297;IndelType=I;MQ=60.0;MQ0=0;QD=43.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:480,30,0
12    15731744    rs1024843    C    T    272.06    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.592;QD=20.93;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    0/1:3,10:13:84.69:302,0,85
12    15742313    rs34222753    GA    G    332.74    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.572;DB;DP=53;FS=0.0;HRun=13;HaplotypeScore=219.135;IndelType=D;MQ=59.02;MQ0=0;MQRankSum=1.479;QD=6.28;ReadPosRankSum=-1.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535322    GT:AD:DP:GQ:PL    0/1:28,23:53:99:372,0,592
12    15748020    rs1558787    C    T    341.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281171    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:374,27,0
12    15777486    rs4623959    T    C    174.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281172    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:207,18,0
12    15799812    rs10772867    C    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541465    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
12    15803992    rs4237955    T    C    659.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281172    GT:AD:DP:GQ:PL    1/1:0,22:23:60.16:693,60,0
12    15807367    rs4763427    T    C    243.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535734    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:277,24,0
12    15814758    rs4763429    T    C    283.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508018    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:317,24,0
12    15818880    rs4363660    T    A    455.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535752    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:488,36,0
12    15822229    rs4237957    A    C    388.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535752    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:422,33,0
12    15822244    rs4237958    T    C    612.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EPS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535752    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:646,48,0
12    16036261    rs10734889    C    G    30.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025399    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
12    16050808    rs10772879    T    A    3986.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=58.42;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025399    GT:AD:DP:GQ:PL    1/1:0,133:133:99:3986,310,0
12    16052742    rs4485160    C    T    189.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536737    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:222,18,0
12    16055926    rs71581962    G    GT    2323.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=1;HaplotypeScore=114.0555;IndelType=I;MQ=55.09;MQ0=0;QD=43.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=STRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536737    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2366,160,0
12    16109673    rs2306181    T    G    424.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.463;DB;DP=42;Dels=0.0;FS=5.666;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.172;QD=10.1;ReadPosRankSum=0.251;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_16109522_16109680;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DERA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526530    GT:AD:DP:GQ:PL    0/1:24,18:42:99:454,0,831
12    16185463    rs71530951    CTT    C    2687.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=68;FS=0.0;HRun=5;HaplotypeScore=237.2022;IndelType=D;MQ=59.07;MQ0=1;MQRankSum=1.629;QD=38.95;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DERA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428559    GT:AD:DP:GQ:PL    1/1:2,67:68:99:2730,181,0
12    16342825    rs61915888    G    A    368.59    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.805;QD=13.65;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344941    GT:AD:DP:GQ:PL    0/1:15,12:27:99:399,0,458
12    16369828    rs1671511    A    T    2455.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_AMINO_ACID_CHANGE=D494E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_16369827_16369958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344941    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2488,184,0
12    16392545    rs11056836    C    T    63.60    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=5.78;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344941    GT:AD:DP:GQ:PL    0/1:7,4:11:93.60:94,0,258
12    16397677    rs1527014    G    A    4521.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9699;MQ=59.1;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=P271L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_16397514_16397734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344941    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4521,340,0
12    16397746    rs1852451    C    T    4381.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.29;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344941    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4381,322,0
12    16411035    rs1799492    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344941    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
12    16425911    rs1671484    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344941    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
12    16507142    .    C    T    414.31    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DP=30;Dels=0.0;FS=4.499;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.963;QD=13.81;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000010404    GT:AD:DP:GQ:PL    0/1:13,17:30:99:444,0,464
12    16510395    rs2075239    T    G    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537878    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
12    18234422    rs11043839    C    A    503.62    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.949;DB;DP=28;Dels=0.0;FS=2.378;HRun=1;HaplotypeScore=0.7887;MQ=59.17;MQ0=0;MQRankSum=0.276;QD=17.99;ReadPosRankSum=0.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229002    GT:AD:DP:GQ:PL    0/1:12,16:28:99:534,0,220
12    18234461    rs11043840    T    A    40.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=15;Dels=0.0;FS=0.0;HRun=16;HaplotypeScore=1.9598;MQ=58.45;MQ0=0;MQRankSum=0.53;QD=2.68;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229002    GT:AD:DP:GQ:PL    0/1:9,6:15:70.21:70,0,218
12    18237688    rs6486881    C    A    435.01    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.729;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3322;MQ=59.11;MQ0=0;MQRankSum=-0.026;QD=16.73;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RERGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229002    GT:AD:DP:GQ:PL    0/1:12,14:26:99:465,0,325
12    18467005    rs11830182    C    T    1490.81    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=1.871;DB;DP=119;Dels=0.0;FS=4.619;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.483;QD=12.53;ReadPosRankSum=-0.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:65,54:119:99:1521,0,1972
12    18473928    rs12309666    T    C    483.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.033;DB;DP=45;Dels=0.0;FS=1.177;HRun=1;HaplotypeScore=1.933;MQ=60.0;MQ0=0;MQRankSum=-0.207;QD=10.74;ReadPosRankSum=-1.449;SNPEFF_AMINO_ACID_CHANGE=N390;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_18473896_18473966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:25,20:45:99:513,0,809
12    18491597    .    CTG    C    147.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DP=24;FS=0.0;HRun=0;HaplotypeScore=186.8243;IndelType=D;MQ=50.65;MQ0=0;MQRankSum=-0.348;QD=6.16;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    1/1:15,5:24:24.25:190,24,0
12    18499636    rs17847788    C    T    2817.61    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=183;Dels=0.0;FS=2.589;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.854;QD=15.4;ReadPosRankSum=0.909;SNPEFF_AMINO_ACID_CHANGE=Y497;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_18499575_18499770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:89,94:183:99:2848,0,2822
12    18499777    rs10770357    C    G    3343.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    1/1:1,105:106:99:3344,247,0
12    18534866    rs11044057    C    A    1357.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=5.928;DB;DP=70;Dels=0.0;FS=1.13;HRun=1;HaplotypeScore=1.5226;MQ=59.01;MQ0=0;MQRankSum=0.314;QD=19.39;ReadPosRankSum=0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:30,40:70:99:1388,0,782
12    18576730    rs12424423    C    T    82.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.741;QD=8.2;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:6,4:10:99:112,0,219
12    18641326    rs7137852    T    C    1908.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.05;MQ0=0;QD=38.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1941,144,0
12    18644222    rs1374671    G    C    241.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.578;QD=15.08;ReadPosRankSum=1.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:8,8:16:99:271,0,235
12    18649057    rs12312266    C    T    430.54    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.357;QD=15.95;ReadPosRankSum=-0.814;SNPEFF_AMINO_ACID_CHANGE=P911L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_18648996_18649088;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:11,16:27:99:461,0,321
12    18656174    rs11044141    G    C    1166.09    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.341;DB;DP=68;Dels=0.0;FS=1.261;HRun=0;HaplotypeScore=1.9565;MQ=58.98;MQ0=0;MQRankSum=-0.782;QD=17.15;ReadPosRankSum=-1.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1196,0,795
12    18656225    rs11044142    G    A    1621.75    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8332;MQ=59.31;MQ0=0;MQRankSum=-1.486;QD=16.06;ReadPosRankSum=-1.253;SNPEFF_AMINO_ACID_CHANGE=Q1009;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_18656215_18656351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538779    GT:AD:DP:GQ:PL    0/1:43,58:101:99:1652,0,1385
12    18690977    rs11044171    A    G    389.57    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.128;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.732;QD=16.23;ReadPosRankSum=-0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    0/1:10,14:24:99:420,0,341
12    18801017    rs501379    T    C    1221.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.41;MQ0=0;QD=31.32;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3C2G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266497    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1254,105,0
12    18840911    rs2306798    A    G    312.44    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.453;QD=19.53;ReadPosRankSum=1.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540421    GT:AD:DP:GQ:PL    0/1:5,11:16:99:342,0,150
12    18847728    rs12826151    A    C    32.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=4.66;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540515    GT:AD:DP:GQ:PL    0/1:4,3:7:62.59:63,0,151
12    18848131    rs1487070    T    C    176.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.001;QD=17.67;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540515    GT:AD:DP:GQ:PL    0/1:4,6:10:89.16:207,0,89
12    18849071    rs3825081    G    C    362.76    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.425;DB;DP=23;Dels=0.0;FS=2.143;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.976;QD=15.77;ReadPosRankSum=-0.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540515    GT:AD:DP:GQ:PL    0/1:9,14:23:99:393,0,236
12    18858372    rs1542681    C    G    446.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266505    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:479,36,0
12    18872325    rs10841078    G    C    155.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.248;QD=17.28;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541109    GT:AD:DP:GQ:PL    0/1:3,6:9:99:185,0,101
12    18891079    rs1075421    T    C    267.50    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=20.58;ReadPosRankSum=0.271;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266505    GT:AD:DP:GQ:PL    0/1:5,8:13:99:297,0,167
12    19282670    rs28512290    C    T    158.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299275    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
12    19406863    rs6486942    C    T    2736.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9967;MQ=59.75;MQ0=0;QD=27.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299275    GT:AD:DP:GQ:PL    1/1:0,99:99:99:2769,229,0
12    19407017    rs78190272    G    T    935.35    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=64;Dels=0.0;FS=3.671;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.479;QD=14.61;ReadPosRankSum=0.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534979    GT:AD:DP:GQ:PL    0/1:31,33:64:99:965,0,1037
12    19410474    rs35773020    AT    A    213.21    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.314;DB;DP=50;FS=0.0;HRun=13;HaplotypeScore=207.9697;IndelType=D;MQ=57.85;MQ0=0;MQRankSum=1.205;QD=4.26;ReadPosRankSum=1.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534979    GT:AD:DP:GQ:PL    0/1:28,19:50:99:252,0,399
12    19413719    rs7960702    A    G    486.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.63;MQ0=0;QD=28.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538034    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:519,45,0
12    19418588    rs6486945    G    A    967.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299275    GT:AD:DP:GQ:PL    1/1:0,25:25:75.24:1001,75,0
12    19418874    rs7316780    C    T    928.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538305    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:962,72,0
12    19422573    rs4963554    G    T    279.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538305    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
12    19428009    rs2279537    T    A    33.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.35;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299275    GT:AD:DP:GQ:PL    0/1:2,2:4:63.41:63,0,65
12    19459591    rs704161    G    A    1587.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.17;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309364    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1621,129,0
12    19506613    rs4963533    A    G    106.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299275    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:139,12,0
12    19512563    rs11044515    G    A    444.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299275    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:478,36,0
12    19519266    rs1344716    A    G    132.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536974    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
12    19609929    rs10770486    G    A    194.09    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.098;DB;DP=23;Dels=0.0;FS=1.643;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;MQRankSum=-0.807;QD=8.44;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266508    GT:AD:DP:GQ:PL    0/1:15,8:23:99:224,0,466
12    19609952    rs63281060    A    G    52.95    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.584;DB;DP=22;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=58.57;MQ0=0;MQRankSum=-2.063;QD=2.41;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266508    GT:AD:DP:GQ:PL    0/1:15,7:22:82.95:83,0,521
12    19609953    rs61912770    A    C    58.38    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=22;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=58.57;MQ0=0;MQRankSum=-1.518;QD=2.65;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266508    GT:AD:DP:GQ:PL    0/1:15,7:22:88.37:88,0,528
12    19615241    rs4963535    C    T    253.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=16.89;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266508    GT:AD:DP:GQ:PL    0/1:6,8:15:99:283,0,200
12    19646575    rs11044611    G    A    101.57    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.38;QD=14.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266508    GT:AD:DP:GQ:PL    0/1:2,5:7:48.80:132,0,49
12    19667574    rs75491586    C    T    1110.08    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.599;DB;DP=75;Dels=0.0;FS=5.158;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.461;QD=14.8;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266508    GT:AD:DP:GQ:PL    0/1:38,37:75:99:1140,0,1189
12    19670848    rs11044635    A    G    61.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.3;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266508    GT:AD:DP:GQ:PL    0/1:2,3:5:64.97:91,0,65
12    20709733    rs4762972    G    A    799.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:832,63,0
12    20766559    rs10743380    C    T    1678.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=V398;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_20766377_20766634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1712,129,0
12    20766685    rs7308381    G    C    580.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:614,45,0
12    20769026    rs68125264    TTAGA    T    206.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=29.1409;IndelType=D;MQ=52.5;MQ0=0;QD=41.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:249,15,0
12    20774464    rs10743381    A    G    1145.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1178,87,0
12    20774539    rs10734705    A    G    295.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
12    20783099    rs7304499    A    C    2610.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.24;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2644,214,0
12    20786787    rs4265636    T    C    523.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:556,42,0
12    20800020    rs117453345    C    T    191.66    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-0.067;QD=21.3;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    0/1:2,7:9:46.79:222,0,47
12    20801855    rs9284155    C    T    100.56    HaplotypeScoreFilter13    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=2.292;DB;DP=28;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=19.445;MQ=50.94;MQ0=0;MQRankSum=-0.355;QD=3.59;ReadPosRankSum=-1.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    0/1:9,19:28:50.28:131,0,50
12    20803266    rs10770682    G    A    175.16    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.954;QD=13.47;ReadPosRankSum=-1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    0/1:6,7:13:99:205,0,209
12    20803323    rs9804769    A    C    1132.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    1/1:0,29:29:84.28:1166,84,0
12    20806723    rs74066232    A    G    141.24    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=17.66;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359062    GT:AD:DP:GQ:PL    0/1:3,5:8:92.04:171,0,92
12    20852449    rs113489958    A    ATTTG    591.30    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.261;DB;DP=19;FS=2.392;HRun=0;HaplotypeScore=72.7912;IndelType=I;MQ=56.86;MQ0=0;MQRankSum=-1.588;QD=31.12;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534996    GT:AD:DP:GQ:PL    0/1:11,7:19:99:630,0,405
12    20858680    rs61579575    T    C    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
12    20864356    rs7963279    C    T    626.49    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.998;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=59.6;MQ0=0;MQRankSum=-0.528;QD=10.99;ReadPosRankSum=-0.428;SNPEFF_AMINO_ACID_CHANGE=S147;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_20864320_20864444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    0/1:34,23:57:99:656,0,1025
12    20864496    rs58482708    A    G    437.05    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.09;QD=16.81;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    0/1:11,15:26:99:467,0,382
12    20867893    rs2056136    C    T    104.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.95;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    0/1:3,4:7:99:135,0,106
12    20867927    rs11045406    C    T    183.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=15.31;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,173
12    20870265    rs2417862    T    C    62.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.48;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    0/1:3,3:6:91.16:93,0,91
12    20874990    rs11045408    C    G    338.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.244;DB;DP=28;Dels=0.0;FS=3.891;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=12.07;ReadPosRankSum=-1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    0/1:12,16:28:99:368,0,393
12    20876227    rs12820079    G    C    166.11    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=7.91;ReadPosRankSum=-0.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    0/1:15,6:21:99:196,0,490
12    20889942    rs974453    A    G    108.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
12    20893052    rs2037154    C    A    302.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.525;QD=13.75;ReadPosRankSum=-0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLCO1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266509    GT:AD:DP:GQ:PL    0/1:11,11:22:99:332,0,398
12    20968644    rs4149157    AATATTCACTTGGTATCTG    A    1535.99    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=4.123;DB;DP=46;FS=5.208;HRun=0;HaplotypeScore=706.6366;IndelType=D;MQ=53.64;MQ0=1;MQRankSum=-4.147;QD=32.68;ReadPosRankSum=0.317;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553473    GT:AD:DP:GQ:PL    0/1:35,10:46:99:1575,0,8320
12    20968665    rs4149158    GTTTA    G    464.66    PASS    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=5.185;DB;DP=53;FS=1.51;HRun=0;HaplotypeScore=462.3727;IndelType=D;MQ=55.0;MQ0=0;MQRankSum=-4.497;QD=8.77;ReadPosRankSum=2.076;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553473    GT:AD:DP:GQ:PL    0/1:43,10:53:99:504,0,3174
12    20968828    rs10734710    C    T    193.24    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=26;Dels=0.0;FS=4.437;HRun=1;HaplotypeScore=0.9973;MQ=55.4;MQ0=0;MQRankSum=-1.387;QD=7.43;ReadPosRankSum=-0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:17,9:26:99:223,0,560
12    21011235    rs4149114    T    C    126.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
12    21011296    rs4149115    A    G    535.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:568,48,0
12    21011310    rs4149116    T    C    771.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:805,60,0
12    21011480    rs4149117    T    G    3540.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9279;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=S112A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21011373_21011505;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3540,265,0
12    21011581    rs4149118    G    A    816.88    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=47;Dels=0.0;FS=2.095;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.802;QD=17.38;ReadPosRankSum=-1.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:21,26:47:99:847,0,697
12    21013948    rs3764009    C    T    2671.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2705,196,0
12    21014139    rs3764008    C    G    716.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:749,54,0
12    21014163    rs3764007    T    A    535.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:568,42,0
12    21014178    rs7306033    A    G    165.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=18.34;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:3,6:9:98.69:195,0,99
12    21014269    rs4149119    G    A    126.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    21015139    rs1017385    G    T    122.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
12    21015205    rs1017386    C    A    388.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:422,33,0
12    21015243    rs2017737    C    G    920.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:953,72,0
12    21015610    rs1036261    A    G    1176.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,33:33:93.29:1210,93,0
12    21015760    rs7311358    G    A    1987.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_AMINO_ACID_CHANGE=M233I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21015690_21015788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540229    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2021,147,0
12    21015906    rs17680137    C    G    59.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.45;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:4,3:7:89.15:89,0,140
12    21028093    rs3829311    T    C    2687.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,72:73:99:2721,199,0
12    21028208    rs60140950    G    C    2069.81    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.348;DB;DP=151;Dels=0.0;FS=1.374;HRun=0;HaplotypeScore=0.8667;MQ=59.85;MQ0=0;MQRankSum=-0.145;QD=13.71;ReadPosRankSum=-0.051;SNPEFF_AMINO_ACID_CHANGE=G256A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21028169_21028411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540229    GT:AD:DP:GQ:PL    0/1:77,74:151:99:2100,0,2194
12    21030582    rs4149135    G    A    157.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540853    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:191,15,0
12    21030590    rs4149137    C    T    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540853    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,150
12    21031020    rs2417938    A    G    126.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540853    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    21032242    rs4149142    T    G    232.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540853    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:266,24,0
12    21036270    rs2053097    T    G    479.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:512,45,0
12    21036411    rs2053098    A    G    2939.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=A343;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21036352_21036536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544370    GT:AD:DP:GQ:PL    1/1:0,94:94:99:2973,232,0
12    21036683    rs2053099    A    C    169.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
12    21051489    rs4149153    C    T    464.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:498,36,0
12    21054369    rs3764006    G    A    4311.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5985;MQ=59.47;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=G435;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21054284_21054401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544370    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4311,325,0
12    21168758    rs34168692    T    TA    518.60    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.683;DB;DP=41;FS=2.483;HRun=9;HaplotypeScore=99.9745;IndelType=I;MQ=60.53;MQ0=0;MQRankSum=-0.15;QD=12.65;ReadPosRankSum=-0.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:20,21:41:99:558,0,286
12    21175691    rs10841725    A    G    309.13    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=0.462;QD=11.89;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:14,12:26:99:339,0,471
12    21175703    rs10841726    G    A    383.51    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.64;MQ0=0;MQRankSum=1.046;QD=12.37;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:17,14:31:99:413,0,596
12    21175719    rs10841727    A    G    601.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=58.33;MQ0=0;MQRankSum=0.717;QD=14.33;ReadPosRankSum=-1.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:21,21:42:99:632,0,598
12    21176135    rs1546308    T    C    3834.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=V167A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21176123_21176221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421593    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3835,274,0
12    21176247    rs1546307    A    G    1444.94    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=76;Dels=0.0;FS=2.56;HRun=0;HaplotypeScore=3.2985;MQ=59.75;MQ0=0;MQRankSum=0.568;QD=19.01;ReadPosRankSum=0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:27,49:76:99:1475,0,839
12    21196078    rs56106455    A    G    217.96    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.849;MQ=58.75;MQ0=0;MQRankSum=-0.872;QD=14.53;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:7,8:15:99:248,0,240
12    21201663    rs11045689    G    A    352.35    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.428;DB;DP=31;Dels=0.0;FS=1.69;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.921;QD=11.37;ReadPosRankSum=-0.507;SNPEFF_AMINO_ACID_CHANGE=A338T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21201646_21201841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421593    GT:AD:DP:GQ:PL    0/1:18,13:31:99:382,0,487
12    21207346    rs7312369    T    C    963.28    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=4.268;DB;DP=55;Dels=0.0;FS=5.975;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.891;QD=17.51;ReadPosRankSum=-1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:24,31:55:99:993,0,791
12    21220349    rs1910163    A    T    493.63    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=1.796;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.824;QD=15.92;ReadPosRankSum=-0.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-545J16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381541    GT:AD:DP:GQ:PL    0/1:10,21:31:99:524,0,272
12    21317791    rs4149032    C    T    63.12    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.185;QD=4.86;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    0/1:10,3:13:93.11:93,0,304
12    21317810    rs4149033    A    G    377.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    1/1:0,16:16:30.10:410,30,0
12    21325347    rs7295464    G    A    79.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:112,9,0
12    21327652    rs34728625    T    TA    568.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=14;HaplotypeScore=221.1554;IndelType=I;MQ=58.69;MQ0=0;QD=12.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    1/1:16,27:45:71.70:610,72,0
12    21329738    rs2306283    A    G    1982.19    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.812;DB;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7284;MQ=59.45;MQ0=0;MQRankSum=0.584;QD=15.86;ReadPosRankSum=-0.794;SNPEFF_AMINO_ACID_CHANGE=N130D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21329710_21329831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    0/1:48,75:125:99:2012,0,1329
12    21331599    rs4149057    T    C    1023.57    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=78;Dels=0.0;FS=1.854;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.366;QD=13.12;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=L191;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21331510_21331656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    0/1:43,35:78:99:1054,0,1440
12    21331987    rs2291076    C    T    737.62    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=4.53;DB;DP=53;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.438;QD=13.92;ReadPosRankSum=1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    0/1:29,24:53:99:768,0,830
12    21358695    rs3830216    T    TTTC    657.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.971;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=43.7297;IndelType=I;MQ=54.64;MQ0=0;MQRankSum=0.182;QD=41.09;ReadPosRankSum=-1.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    0/1:4,12:16:99:696,0,154
12    21369883    rs4149070    C    G    101.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=16.86;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    0/1:2,4:6:66.35:131,0,66
12    21369964    rs4149071    T    C    293.94    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=17.29;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    0/1:7,10:17:99:324,0,208
12    21369985    rs4149072    G    A    312.23    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=14.19;ReadPosRankSum=-0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256958    GT:AD:DP:GQ:PL    0/1:11,10:22:99:342,0,380
12    21427608    rs3736080    G    T    378.69    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.686;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=13.06;ReadPosRankSum=-0.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390670    GT:AD:DP:GQ:PL    0/1:17,12:29:99:409,0,621
12    21428307    rs11568565    G    A    321.72    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=0.462;QD=12.37;ReadPosRankSum=2.493;SNPEFF_AMINO_ACID_CHANGE=C422;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21428294_21428358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458504    GT:AD:DP:GQ:PL    0/1:12,13:26:99:352,0,357
12    21428371    rs3764044    T    C    198.48    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.087;QD=11.03;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307378    GT:AD:DP:GQ:PL    0/1:11,7:18:99:228,0,326
12    21450250    rs4148999    C    G    57.45    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=5.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307378    GT:AD:DP:GQ:PL    0/1:8,3:11:87.44:87,0,291
12    21457514    rs3833795    TA    T    442.86    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=3.501;DB;DP=52;FS=1.191;HRun=10;HaplotypeScore=147.6757;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=0.458;QD=8.52;ReadPosRankSum=0.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422327    GT:AD:DP:GQ:PL    0/1:28,24:52:99:482,0,618
12    21471518    rs2219793    T    G    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421287    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,70
12    21471891    rs11568570    T    A    397.37    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=31;Dels=0.0;FS=3.851;HRun=6;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=0.821;QD=12.82;ReadPosRankSum=-0.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307378    GT:AD:DP:GQ:PL    0/1:13,18:31:99:427,0,467
12    21526443    rs41275208    C    A    173.60    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.143;QD=15.78;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IAPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240652    GT:AD:DP:GQ:PL    0/1:5,6:11:99:204,0,149
12    21526472    rs12306121    A    G    71.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.922;QD=8.99;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IAPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240652    GT:AD:DP:GQ:PL    0/1:4,4:8:99:102,0,122
12    21531437    rs5484    C    T    270.09    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=14.22;ReadPosRankSum=-0.612;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IAPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537593    GT:AD:DP:GQ:PL    0/1:9,10:19:99:300,0,317
12    21561645    rs7135807    T    C    364.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9895;MQ=52.77;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413682    GT:AD:DP:GQ:PL    1/1:0,16:16:33.10:397,33,0
12    21590621    rs2058464    T    C    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_21590611_21590748;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    21590788    rs2110165    C    A    77.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
12    21593404    rs4762702    G    C    1960.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1994,144,0
12    21598195    rs1963330    G    A    339.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,12:12:30.06:373,30,0
12    21605157    rs3759229    A    C    250.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
12    21607903    rs2192181    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
12    21608011    rs2192182    G    T    1260.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,35:35:96.29:1294,96,0
12    21608043    rs2192183    A    G    1859.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9497;MQ=57.42;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1892,141,0
12    21608392    rs7974743    T    C    37.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=49.84;MQ0=0;QD=18.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
12    21608891    rs2302500    T    C    950.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:984,72,0
12    21609127    rs4367993    T    C    295.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538072    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
12    21609180    rs11046066    T    G    72.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.02;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538072    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:102,0,29
12    21609222    rs4388943    G    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538072    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    21613867    rs7138359    A    G    1490.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=32.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538072    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1524,129,0
12    21613923    rs7309539    T    C    3102.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9399;MQ=58.73;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538072    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3136,229,0
12    21614141    rs66462476    CAATTT    C    1616.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=174.3667;IndelType=D;MQ=51.38;MQ0=0;QD=48.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:5,28:29:78.27:1658,78,0
12    21614256    rs7297084    G    A    163.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
12    21614903    rs3825287    A    G    515.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:548,39,0
12    21614936    rs185019468    T    G    228.66    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=19;Dels=0.0;FS=4.964;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=12.03;ReadPosRankSum=0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    0/1:11,8:19:99:259,0,322
12    21615664    rs3782660    T    C    1346.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.69;MQ0=0;QD=31.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545178    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1380,102,0
12    21621419    rs11046075    C    A    150.87    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.147;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=55.61;MQ0=0;MQRankSum=0.567;QD=4.57;ReadPosRankSum=-0.483;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536851    GT:AD:DP:GQ:PL    0/1:25,8:33:99:181,0,786
12    21621737    rs61926324    A    G    200.85    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.323;DB;DP=24;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=36.08;MQ0=1;MQRankSum=0.462;QD=8.37;ReadPosRankSum=-0.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536851    GT:AD:DP:GQ:PL    0/1:12,12:24:99:231,0,245
12    21623179    rs61754415    T    C    883.08    MQFilter40    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.326;DB;DP=78;Dels=0.0;FS=5.979;HRun=0;HaplotypeScore=0.8941;MQ=39.07;MQ0=1;MQRankSum=1.247;QD=11.32;ReadPosRankSum=-0.717;SNPEFF_AMINO_ACID_CHANGE=Q633;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21622736_21623280;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421138    GT:AD:DP:GQ:PL    0/1:41,37:78:99:913,0,926
12    21623969    rs6500    A    G    548.71    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.744;DB;DP=37;Dels=0.0;FS=3.79;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.142;QD=14.83;ReadPosRankSum=-0.49;SNPEFF_AMINO_ACID_CHANGE=N577;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21623903_21624032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421138    GT:AD:DP:GQ:PL    0/1:18,19:37:99:579,0,564
12    21624308    rs148696574    TA    T    226.63    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.802;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=48.205;IndelType=D;MQ=60.51;MQ0=0;MQRankSum=0.391;QD=10.79;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    0/1:9,12:21:99:266,0,250
12    21624694    rs144724920    TA    T    275.44    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=19;FS=0.0;HRun=3;HaplotypeScore=99.7565;IndelType=D;MQ=52.24;MQ0=0;MQRankSum=0.776;QD=14.5;ReadPosRankSum=0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    0/1:9,10:19:99:314,0,332
12    21627557    rs997820    A    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    21627672    rs35159698    C    G    408.32    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.88;QD=25.52;ReadPosRankSum=2.243;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    0/1:4,12:16:99:438,0,114
12    21627745    rs2159943    A    G    594.05    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.394;DB;DP=50;Dels=0.0;FS=2.697;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=11.88;ReadPosRankSum=-0.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    0/1:28,22:50:99:624,0,865
12    21628255    rs150881760    A    G    161.65    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=23.09;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PYROXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240651    GT:AD:DP:GQ:PL    0/1:2,5:7:22.59:192,0,23
12    21628320    rs10841831    C    T    444.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.022;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.418;QD=14.83;ReadPosRankSum=-0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421138    GT:AD:DP:GQ:PL    0/1:15,15:30:99:475,0,478
12    21628336    rs10841832    G    A    565.30    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=2.178;DB;DP=39;Dels=0.0;FS=2.183;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.07;QD=14.49;ReadPosRankSum=-0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421138    GT:AD:DP:GQ:PL    0/1:19,20:39:99:595,0,630
12    21628791    rs3752648    T    C    249.09    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.054;DB;DP=27;Dels=0.0;FS=5.849;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.108;QD=9.23;ReadPosRankSum=0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421138    GT:AD:DP:GQ:PL    0/1:17,10:27:99:279,0,517
12    21628812    rs10160843    G    A    649.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421138    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:683,51,0
12    21629987    rs917854    T    C    350.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9887;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421138    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:383,33,0
12    21629993    rs35536022    A    AC    200.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=50.8317;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=20.08;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421138    GT:AD:DP:GQ:PL    0/1:4,6:10:99:240,0,126
12    21639385    .    TA    T    68.21    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=1.228;DP=26;FS=2.696;HRun=12;HaplotypeScore=111.362;IndelType=D;MQ=57.29;MQ0=0;MQRankSum=-1.858;QD=2.62;ReadPosRankSum=0.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536240    GT:AD:DP:GQ:PL    0/1:15,9:26:99:107,0,356
12    21644667    rs10841834    G    A    136.56    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=17;Dels=0.0;FS=17.16;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.635;QD=8.03;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314748    GT:AD:DP:GQ:PL    0/1:9,8:17:99:167,0,298
12    21654831    rs1060126    G    T    56.70    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=11;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=5.15;ReadPosRankSum=1.531;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOLT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535593    GT:AD:DP:GQ:PL    0/1:8,3:11:86.69:87,0,243
12    21657590    rs68116137    AT    A    913.43    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=5.979;DB;DP=73;FS=0.0;HRun=2;HaplotypeScore=169.9403;IndelType=D;MQ=60.15;MQ0=0;MQRankSum=-0.531;QD=12.51;ReadPosRankSum=-0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOLT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229314    GT:AD:DP:GQ:PL    0/1:43,30:73:99:952,0,1663
12    21659973    rs16923862    T    C    179.94    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.656;QD=13.84;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOLT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229314    GT:AD:DP:GQ:PL    0/1:7,6:13:99:210,0,249
12    21661508    rs11046091    A    G    279.84    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.398;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.015;QD=7.0;ReadPosRankSum=-1.136;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOLT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545113    GT:AD:DP:GQ:PL    0/1:28,12:40:99:310,0,943
12    21665207    rs61926342    A    G    959.27    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.636;DB;DP=51;Dels=0.0;FS=1.534;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.603;QD=18.81;ReadPosRankSum=-0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOLT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545113    GT:AD:DP:GQ:PL    0/1:21,30:51:99:989,0,661
12    21679652    rs72419825    CTT    C    856.04    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=4.394;DB;DP=46;FS=0.0;HRun=3;HaplotypeScore=152.5518;IndelType=D;MQ=59.19;MQ0=1;MQRankSum=-1.533;QD=18.21;ReadPosRankSum=0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256969    GT:AD:DP:GQ:PL    0/1:24,23:46:99:895,0,1140
12    21680609    rs7966780    C    G    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256969    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
12    21684029    rs3765093    G    A    337.15    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=14;Dels=0.0;FS=7.549;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.495;QD=24.08;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256969    GT:AD:DP:GQ:PL    0/1:4,10:14:99:367,0,111
12    21689736    rs936    G    A    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.82;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256969    GT:AD:DP:GQ:PL    0/1:4,2:6:64.93:65,0,147
12    21689882    rs10431213    T    A    512.16    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.297;DB;DP=46;Dels=0.0;FS=5.017;HRun=1;HaplotypeScore=1.893;MQ=60.0;MQ0=0;MQRankSum=0.819;QD=11.13;ReadPosRankSum=-0.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256969    GT:AD:DP:GQ:PL    0/1:29,17:46:99:542,0,894
12    21692166    rs36023861    CA    C    802.96    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=3.36;DB;DP=71;FS=4.377;HRun=9;HaplotypeScore=206.8708;IndelType=D;MQ=59.55;MQ0=0;MQRankSum=0.652;QD=11.31;ReadPosRankSum=0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537527    GT:AD:DP:GQ:PL    0/1:32,39:71:99:842,0,801
12    21695584    rs3741841    A    G    218.14    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=3.147;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.512;QD=7.52;ReadPosRankSum=0.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:21,8:29:99:248,0,693
12    21699508    rs1904121    T    C    34.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:64,0,33
12    21711111    rs7977474    G    C    318.94    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.923;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.646;QD=13.87;ReadPosRankSum=0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:12,11:23:99:349,0,310
12    21712545    rs1871136    A    G    300.72    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.088;QD=13.67;ReadPosRankSum=2.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:12,10:22:99:331,0,406
12    21712574    rs1871137    C    T    364.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.787;DB;DP=28;Dels=0.0;FS=7.346;HRun=3;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.137;QD=13.02;ReadPosRankSum=-0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:16,12:28:99:395,0,482
12    21712896    rs1871138    G    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    21713308    rs4639981    T    A    865.29    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.149;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.148;QD=13.11;ReadPosRankSum=-0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:36,30:66:99:895,0,1130
12    21713402    rs2306180    T    C    1092.60    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.238;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.36;MQ0=0;MQRankSum=0.898;QD=11.62;ReadPosRankSum=-1.768;SNPEFF_AMINO_ACID_CHANGE=M363V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21713320_21713426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:51,43:94:99:1123,0,1565
12    21715801    rs1473421    A    G    1242.91    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=83;Dels=0.0;FS=4.622;HRun=1;HaplotypeScore=0.0;MQ=58.03;MQ0=0;MQRankSum=-0.854;QD=14.97;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:40,43:83:99:1273,0,1173
12    21715989    rs8192697    C    T    722.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.685;DB;DP=65;Dels=0.0;FS=0.996;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.06;QD=11.11;ReadPosRankSum=-1.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:39,26:65:99:752,0,1358
12    21716055    rs1473422    A    C    324.21    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.463;DB;DP=42;Dels=0.0;FS=1.321;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;MQRankSum=-1.632;QD=7.72;ReadPosRankSum=1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:29,13:42:99:354,0,1088
12    21716098    rs1473423    T    C    341    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.857;DB;DP=40;Dels=0.0;FS=1.271;HRun=0;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;MQRankSum=-0.156;QD=8.53;ReadPosRankSum=0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    0/1:26,14:40:99:371,0,894
12    21727315    rs7963756    C    A    297.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
12    21733121    rs2126887    T    G    256.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
12    21757272    rs153944    A    G    1021.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261195    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1054,78,0
12    21789968    rs1677134    G    T    2881.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=34.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396075    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2915,214,0
12    21791272    rs1650289    T    C    2686.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=54.46;MQ0=0;QD=36.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396075    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2719,211,0
12    21791410    rs143625349    TA    T    900.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.244;DB;DP=104;FS=0.0;HRun=15;HaplotypeScore=846.6443;IndelType=D;MQ=49.36;MQ0=0;MQRankSum=0.975;QD=8.66;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350669    GT:AD:DP:GQ:PL    1/1:32,57:104:80.53:942,81,0
12    21791455    rs1427830    A    T    1181.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.18;MQ0=0;QD=17.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350669    GT:AD:DP:GQ:PL    1/1:1,65:67:99:1215,108,0
12    21791565    rs1677129    A    C    132.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470280    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:165,15,0
12    21794865    rs1626023    A    T    1345.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=58.92;MQ0=0;QD=31.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450584    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1379,108,0
12    21796814    rs4762862    G    A    535.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450584    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:568,45,0
12    21797029    rs1650294    A    G    738.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_AMINO_ACID_CHANGE=T87;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_21796869_21797042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350669    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:772,57,0
12    21797153    rs1677113    T    C    109.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350669    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
12    21799999    rs1540405    G    C    1670.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350669    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1704,126,0
12    21807432    rs1677078    T    C    1101.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.36;MQ0=0;QD=30.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535112    GT:AD:DP:GQ:PL    1/1:0,35:36:84.27:1135,84,0
12    21807640    rs1650315    G    A    1123.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350669    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1156,84,0
12    21807687    rs7953579    C    G    890.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LDHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350669    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:924,66,0
12    21970019    rs2638441    C    T    499.16    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.954;QD=20.8;ReadPosRankSum=-0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    0/1:9,15:24:99:529,0,306
12    21995555    rs1643235    C    A    129.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
12    22005510    rs704183    A    G    953.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:987,75,0
12    22012347    rs704189    G    A    325.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
12    22016004    rs11320426    GA    G    95.39    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=22;FS=0.0;HRun=11;HaplotypeScore=95.3708;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.582;QD=4.34;ReadPosRankSum=-1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    0/1:14,8:22:99:134,0,306
12    22017422    rs697250    A    G    1822.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1855,135,0
12    22017486    rs697251    C    G    1468.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1501,108,0
12    22035873    rs1356368    C    T    170.95    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=11.4;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    0/1:8,7:15:99:201,0,271
12    22035883    rs1283802    T    G    214.10    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.099;QD=14.27;ReadPosRankSum=2.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    0/1:8,7:15:99:244,0,286
12    22047151    rs704216    G    T    1453.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1487,111,0
12    22047174    rs704217    C    T    1144.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,32:32:93.26:1177,93,0
12    22059371    rs10160924    A    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    22063115    rs10770865    A    G    2444.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=P432;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_22063091_22063246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2478,190,0
12    22063337    rs4148656    A    G    706.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:740,54,0
12    22063737    rs4762719    G    T    2990.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.74;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3023,223,0
12    22063749    rs4762720    T    C    3131.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.29;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3164,232,0
12    22063971    rs4148654    A    G    641.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:675,48,0
12    22065699    rs3835048    G    GA    501.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=35.9516;IndelType=I;MQ=59.24;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:1,15:16:45.14:544,45,0
12    22068849    rs3759236    G    T    1061.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1094,84,0
12    22070231    rs4148649    T    C    74.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
12    22078838    rs2277405    T    G    1660.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=30.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1693,126,0
12    22086976    rs6487252    A    C    132.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:165,15,0
12    22089348    rs4586220    G    A    404.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261200    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:438,33,0
12    22215194    rs33946820    CT    C    79.69    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=27;FS=0.0;HRun=17;HaplotypeScore=183.6398;IndelType=D;MQ=53.71;MQ0=0;MQRankSum=0.551;QD=2.95;ReadPosRankSum=-0.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538498    GT:AD:DP:GQ:PL    0/1:11,15:27:64.54:119,0,65
12    22217864    rs7954234    T    C    154.66    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.78;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535610    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:185,0,24
12    22354921    rs704219    A    G    699.23    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.771;DB;DP=58;Dels=0.0;FS=1.033;HRun=0;HaplotypeScore=0.9967;MQ=59.12;MQ0=0;MQRankSum=1.017;QD=12.06;ReadPosRankSum=-1.066;SNPEFF_AMINO_ACID_CHANGE=I163;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_22354838_22354972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ST8SIA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540824    GT:AD:DP:GQ:PL    0/1:31,27:58:99:729,0,1025
12    22439322    rs3819878    T    C    878.06    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=2.714;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6809;MQ=60.0;MQ0=0;MQRankSum=-0.35;QD=13.11;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ST8SIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396037    GT:AD:DP:GQ:PL    0/1:39,28:67:99:908,0,1361
12    22439467    rs3819879    T    G    2786.83    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.596;DB;DP=241;DS;Dels=0.0;FS=7.438;HRun=0;HaplotypeScore=8.9716;MQ=60.0;MQ0=0;MQRankSum=1.267;QD=11.56;ReadPosRankSum=1.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ST8SIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396037    GT:AD:DP:GQ:PL    0/1:140,101:241:99:2817,0,4237
12    22439938    rs56083944    A    G    193.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=24.13;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ST8SIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396037    GT:AD:DP:GQ:PL    0/1:2,6:8:54.66:223,0,55
12    22440281    rs2287166    A    T    313.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.582;DB;DP=20;Dels=0.0;FS=2.629;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.81;QD=15.67;ReadPosRankSum=0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ST8SIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396037    GT:AD:DP:GQ:PL    0/1:8,12:20:99:343,0,240
12    22440315    rs2072542    A    G    521.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ST8SIA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396037    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:554,42,0
12    22602796    rs2063573    A    G    2311.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.525;QD=35.03;ReadPosRankSum=0.052;SNPEFF_AMINO_ACID_CHANGE=D1009;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_22602479_22602825;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396028    GT:AD:DP:GQ:PL    1/1:1,65:66:99:2345,175,0
12    22606738    rs12424580    G    C    488.84    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=32;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=0.9967;MQ=59.28;MQ0=0;MQRankSum=-0.257;QD=15.28;ReadPosRankSum=1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543888    GT:AD:DP:GQ:PL    0/1:15,16:32:99:519,0,516
12    22625661    rs10842027    A    G    889.75    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.338;DB;DP=74;Dels=0.0;FS=3.509;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.044;QD=12.02;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333957    GT:AD:DP:GQ:PL    0/1:41,33:74:99:920,0,1258
12    22637867    rs3736463    C    A    193.89    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=3.358;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.312;QD=14.91;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333957    GT:AD:DP:GQ:PL    0/1:6,7:13:99:224,0,198
12    22642801    rs6487305    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333957    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    22643268    rs7132097    C    A    109.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.7;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333957    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,130
12    22645993    rs73076633    A    G    81.12    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.492;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=5.07;ReadPosRankSum=1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333957    GT:AD:DP:GQ:PL    0/1:11,5:16:99:111,0,388
12    22680851    rs11046459    A    T    566.64    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.282;DB;DP=39;Dels=0.0;FS=4.572;HRun=0;HaplotypeScore=1.5592;MQ=59.41;MQ0=0;MQRankSum=0.38;QD=14.53;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333957    GT:AD:DP:GQ:PL    0/1:18,21:39:99:597,0,606
12    22688366    rs10505884    A    T    107.69    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=15.38;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333957    GT:AD:DP:GQ:PL    0/1:3,4:7:63.23:138,0,63
12    22796994    rs11429701    A    AT    2751.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=1;HaplotypeScore=124.2846;IndelType=I;MQ=61.78;MQ0=0;QD=45.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266517    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2793,178,0
12    22812355    rs4963788    T    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETNK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266517    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    23689301    rs4636755    T    C    265.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367206    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:299,24,0
12    23696116    rs7485662    C    T    2158.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2191,163,0
12    23737326    rs11046991    C    T    148.22    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.17;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    0/1:2,5:7:61.94:178,0,62
12    23737566    rs11046992    G    A    439.88    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.195;QD=20.95;ReadPosRankSum=0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    0/1:8,13:21:99:470,0,263
12    23757096    rs34368159    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    23757164    rs1531603    A    G    91.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.2;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    0/1:5,4:9:99:122,0,176
12    23757188    rs112499833    C    T    133.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.0;QD=11.09;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    0/1:6,6:12:99:163,0,209
12    23757245    rs1479452    C    T    242.66    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=21;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.951;QD=11.56;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    0/1:11,10:21:99:273,0,360
12    23818160    rs17393097    A    T    339.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=21.23;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    0/1:6,10:16:99:370,0,199
12    23818213    rs12822491    T    C    568.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    1/1:0,31:31:74.78:602,75,0
12    23818215    rs34768360    C    CT    1321.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=3;HaplotypeScore=200.8156;IndelType=I;MQ=60.62;MQ0=0;QD=37.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309359    GT:AD:DP:GQ:PL    1/1:2,32:35:99:1363,99,0
12    23998888    rs7980561    T    C    1368.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=36.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538083    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1401,105,0
12    24970708    rs2220269    G    A    80.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539780    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
12    24982706    rs35406045    TA    T    493.53    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=5.385;DB;DP=43;FS=0.0;HRun=8;HaplotypeScore=298.0642;IndelType=D;MQ=55.71;MQ0=0;MQRankSum=-0.542;QD=11.48;ReadPosRankSum=-1.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544418    GT:AD:DP:GQ:PL    0/1:20,23:43:99:533,0,489
12    24982721    rs7398085    A    G    814.75    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=2.325;DB;DP=51;Dels=0.0;FS=5.763;HRun=1;HaplotypeScore=1.9977;MQ=56.41;MQ0=0;MQRankSum=-1.418;QD=15.98;ReadPosRankSum=-1.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544418    GT:AD:DP:GQ:PL    0/1:20,31:51:99:845,0,635
12    24982726    rs28678340    G    A    873.26    PASS    AB=0.358;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.547;DB;DP=53;Dels=0.0;FS=5.365;HRun=3;HaplotypeScore=1.9977;MQ=56.33;MQ0=0;MQRankSum=-1.029;QD=16.48;ReadPosRankSum=-1.808;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544418    GT:AD:DP:GQ:PL    0/1:19,34:53:99:903,0,631
12    24985557    rs16928089    T    A    307.75    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.796;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=14.65;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544418    GT:AD:DP:GQ:PL    0/1:11,10:21:99:338,0,393
12    24985637    rs3736211    T    C    1139.76    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=70;Dels=0.0;FS=2.167;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-2.223;QD=16.05;ReadPosRankSum=0.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544418    GT:AD:DP:GQ:PL    0/1:31,39:70:99:1170,0,944
12    25031205    rs73061812    A    G    35.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.1;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546285    GT:AD:DP:GQ:PL    0/1:3,2:5:65.50:65,0,103
12    25031449    rs6487436    A    G    2579.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3303;MQ=59.72;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546285    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2613,205,0
12    25147300    rs699030    G    C    338.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434912    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:372,27,0
12    25147362    rs1846016    G    A    73.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.28;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434912    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,109
12    25148755    rs864161    C    G    1526.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.22;MQ0=0;QD=28.28;SNPEFF_AMINO_ACID_CHANGE=L131F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_25148741_25149001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000549828    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1560,123,0
12    25236543    rs10743537    C    A    400.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554942    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:433,33,0
12    25242595    rs7969931    C    G    584.34    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.066;DB;DP=50;Dels=0.0;FS=10.731;HRun=0;HaplotypeScore=1.5779;MQ=59.07;MQ0=0;MQRankSum=0.609;QD=11.69;ReadPosRankSum=1.179;SNPEFF_AMINO_ACID_CHANGE=L141V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_25242548_25242611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354454    GT:AD:DP:GQ:PL    0/1:29,21:50:99:614,0,977
12    25242776    rs10743538    C    T    316.10    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=2.443;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.14;MQ0=0;MQRankSum=0.716;QD=11.71;ReadPosRankSum=-0.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550945    GT:AD:DP:GQ:PL    0/1:16,11:27:99:346,0,452
12    25243115    rs1908946    G    C    658.26    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=46;Dels=0.0;FS=5.844;HRun=0;HaplotypeScore=0.9578;MQ=59.59;MQ0=0;MQRankSum=1.433;QD=14.31;ReadPosRankSum=1.61;SNPEFF_AMINO_ACID_CHANGE=C144S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_25242991_25243131;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536173    GT:AD:DP:GQ:PL    0/1:25,21:46:99:688,0,805
12    25248824    rs12229161    C    T    498.08    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.104;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.069;QD=14.65;ReadPosRankSum=-0.104;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354454    GT:AD:DP:GQ:PL    0/1:19,15:34:99:528,0,532
12    25249545    rs3782188    A    G    37.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.36;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354454    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:67,0,33
12    25249743    rs10842464    T    C    1480.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354454    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1513,111,0
12    25249785    rs10771166    T    C    2084.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354454    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2117,157,0
12    25253983    rs11047833    T    A    68.05    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=7.56;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354454    GT:AD:DP:GQ:PL    0/1:5,4:9:98.05:98,0,169
12    25254975    rs7303889    A    C    67.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354454    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
12    25257166    rs12828225    T    A    131.09    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=16.39;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    0/1:3,5:8:98.50:161,0,98
12    25261735    rs859146    G    T    759.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.88;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=A574E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_25261358_25261757;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545133    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:793,63,0
12    25261775    .    T    A    30.65    MQFilter40    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DP=13;Dels=0.0;FS=24.564;HRun=0;HaplotypeScore=2.9968;MQ=37.23;MQ0=0;MQRankSum=0.592;QD=2.36;ReadPosRankSum=-2.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555554    GT:AD:DP:GQ:PL    0/1:10,3:13:24.94:61,0,25
12    25267940    rs10842471    G    A    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
12    25272027    rs2291365    A    G    393.96    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.616;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.109;QD=18.76;ReadPosRankSum=0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    0/1:8,13:21:99:424,0,266
12    25272297    rs2291364    A    C    211.20    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.684;DB;DP=21;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.189;QD=10.06;ReadPosRankSum=-0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    0/1:10,11:21:99:241,0,363
12    25274490    rs7977773    C    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    25274593    rs2220195    A    G    504.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:537,42,0
12    25297048    rs4291763    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
12    25297713    rs7971062    C    T    214.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556467    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
12    25299921    rs11047863    G    A    1571.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=35.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556467    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1604,120,0
12    25302481    rs10842485    T    C    2067.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554347    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2101,156,0
12    25307008    rs10842492    T    G    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554347    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    25311489    rs10842496    G    T    949.47    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.743;DB;DP=72;Dels=0.0;FS=0.993;HRun=0;HaplotypeScore=1.8317;MQ=59.1;MQ0=0;MQRankSum=2.126;QD=13.19;ReadPosRankSum=0.976;SNPEFF_AMINO_ACID_CHANGE=R33S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_25311406_25311497;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    0/1:38,34:72:99:979,0,1109
12    25314275    rs4405405    C    G    619.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:652,48,0
12    25337354    rs10842498    C    T    79.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.82;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:109,0,29
12    25343516    rs10842501    C    T    602.11    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=53;Dels=0.0;FS=6.313;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.909;QD=11.36;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    0/1:29,24:53:99:632,0,854
12    25343707    rs10842502    C    T    56.02    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=7.0;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320267    GT:AD:DP:GQ:PL    0/1:5,3:8:86.02:86,0,174
12    25362552    rs712    A    C    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYRM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381356    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    25368462    rs4362222    C    T    1954.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=59.24;MQ0=0;QD=32.04;SNPEFF_AMINO_ACID_CHANGE=R161;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_25368371_25368494;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256078    GT:AD:DP:GQ:PL    1/1:1,60:61:99:1987,150,0
12    25398162    .    A    C    212.12    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=17.68;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256078    GT:AD:DP:GQ:PL    0/1:5,7:12:99:242,0,173
12    25671759    rs1479500    T    A    2682.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.32;SNPEFF_AMINO_ACID_CHANGE=T269S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_25671729_25671901;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFLTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539744    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2716,208,0
12    25678881    rs1678545    C    T    76.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.69;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFLTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538178    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,105
12    25678995    .    T    TA    418.85    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DP=37;FS=9.627;HRun=12;HaplotypeScore=118.555;IndelType=I;MQ=59.49;MQ0=0;MQRankSum=-0.115;QD=11.32;ReadPosRankSum=-0.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFLTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538178    GT:AD:DP:GQ:PL    0/1:16,19:37:99:458,0,159
12    25679370    rs1479499    T    C    126.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFLTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538178    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    25679932    rs1705419    G    A    347.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFLTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282881    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:381,30,0
12    25699523    rs278990    A    G    559.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFLTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282881    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:593,45,0
12    25702544    rs17422350    A    C    138.32    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.57;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFLTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282881    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,198
12    25706134    rs829047    G    A    68.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=9.77;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFLTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445693    GT:AD:DP:GQ:PL    0/1:4,3:7:98.37:98,0,147
12    25957147    rs76082602    C    T    181.69    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=3.302;DB;DP=61;Dels=0.0;FS=3.367;HRun=0;HaplotypeScore=0.0;MQ=56.54;MQ0=0;MQRankSum=-3.637;QD=2.98;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-443N24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539003    GT:AD:DP:GQ:PL    0/1:48,13:61:99:212,0,1417
12    25957196    rs74070838    A    G    362.96    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.26;DB;DP=51;Dels=0.0;FS=2.76;HRun=1;HaplotypeScore=0.734;MQ=53.65;MQ0=0;MQRankSum=-3.714;QD=7.12;ReadPosRankSum=-0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-443N24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539003    GT:AD:DP:GQ:PL    0/1:31,20:51:99:393,0,1115
12    25957237    rs77818804    T    C    93.24    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.018;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=53.9;MQ0=0;MQRankSum=-4.388;QD=2.59;ReadPosRankSum=1.261;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-443N24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539003    GT:AD:DP:GQ:PL    0/1:25,11:36:99:123,0,861
12    25957238    rs79801762    G    A    121.32    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.208;DB;DP=35;Dels=0.0;FS=1.859;HRun=0;HaplotypeScore=0.5784;MQ=54.31;MQ0=0;MQRankSum=-3.799;QD=3.47;ReadPosRankSum=1.682;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-443N24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539003    GT:AD:DP:GQ:PL    0/1:24,10:35:99:151,0,872
12    25957329    rs73285040    C    G    121.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=25;Dels=0.0;FS=21.475;HRun=0;HaplotypeScore=0.9332;MQ=53.92;MQ0=0;MQRankSum=-1.969;QD=4.85;ReadPosRankSum=0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-443N24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539003    GT:AD:DP:GQ:PL    0/1:15,10:25:99:151,0,538
12    25957350    rs78631208    A    G    104.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=24;Dels=0.0;FS=21.475;HRun=0;HaplotypeScore=0.9578;MQ=54.79;MQ0=0;MQRankSum=-1.13;QD=4.35;ReadPosRankSum=-0.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=RP11-443N24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539003    GT:AD:DP:GQ:PL    0/1:16,8:24:99:134,0,510
12    26221613    rs145316119    CTT    C    1090.29    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=4.899;DB;DP=49;FS=1.314;HRun=3;HaplotypeScore=173.3442;IndelType=D;MQ=59.59;MQ0=0;MQRankSum=0.96;QD=22.25;ReadPosRankSum=-1.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535907    GT:AD:DP:GQ:PL    0/1:21,28:49:99:1129,0,1028
12    26231843    rs7133685    G    T    936.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381352    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:970,72,0
12    26231898    rs4963952    G    A    1625.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.64;MQ0=0;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381352    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1658,120,0
12    26275555    rs11048413    G    A    224.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.41;SNPEFF_AMINO_ACID_CHANGE=A298V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_26272959_26276101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BHLHE41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242728    GT:AD:DP:GQ:PL    1/1:0,9:10:24.01:257,24,0
12    26568456    rs66797056    TAAGAAAAGA    T    1158.94    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=5.069;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=324.1129;IndelType=D;MQ=50.13;MQ0=0;MQRankSum=-5.099;QD=28.97;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:26,14:40:99:1198,0,3045
12    26580814    rs1818135    T    C    326.57    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.178;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=9.61;ReadPosRankSum=0.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:23,11:34:99:357,0,756
12    26591898    rs12366669    T    C    174.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
12    26592288    rs2270960    G    A    615.79    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.62;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.1;QD=19.24;ReadPosRankSum=0.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:14,18:32:99:646,0,438
12    26596348    rs3759117    T    C    136.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
12    26596618    rs2220406    C    T    612.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=58.71;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:645,54,0
12    26639346    rs36049222    T    TA    234.09    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=23;FS=0.0;HRun=13;HaplotypeScore=62.5565;IndelType=I;MQ=60.47;MQ0=0;MQRankSum=-0.543;QD=10.18;ReadPosRankSum=0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:9,11:23:88.14:273,0,88
12    26647311    rs12371474    T    G    78.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.7;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:2,3:5:63.98:108,0,64
12    26648092    rs2230381    C    T    376.79    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.006;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.451;QD=10.77;ReadPosRankSum=-1.249;SNPEFF_AMINO_ACID_CHANGE=Q1725;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_26648085_26648193;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:19,15:35:99:407,0,657
12    26749831    rs2230377    G    A    596.89    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.667;DB;DP=39;Dels=0.0;FS=2.886;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=15.3;ReadPosRankSum=0.857;SNPEFF_AMINO_ACID_CHANGE=D1413;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_26749816_26750067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:20,19:39:99:627,0,615
12    26752897    rs12832680    C    T    499    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.539;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.933;QD=13.86;ReadPosRankSum=-0.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:19,17:36:99:529,0,588
12    26755546    rs3736185    C    T    641.91    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.724;DB;DP=30;Dels=0.0;FS=9.999;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.045;QD=21.4;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:9,21:30:99:672,0,249
12    26774401    rs12303865    G    C    157.39    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.23;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:187,0,24
12    26777379    rs2880875    T    C    397.20    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.986;QD=13.7;ReadPosRankSum=-1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:14,15:29:99:427,0,514
12    26781334    rs10450686    C    T    91.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
12    26784850    rs2230372    G    A    806.35    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.687;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=59.74;MQ0=0;MQRankSum=-1.07;QD=11.2;ReadPosRankSum=1.884;SNPEFF_AMINO_ACID_CHANGE=H961;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_26784799_26784992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:45,27:72:99:836,0,1339
12    26809537    rs2306550    G    A    98.08    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.92;ReadPosRankSum=-2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,258
12    26811045    rs12313993    T    C    310.22    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.617;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.061;QD=12.41;ReadPosRankSum=-1.713;SNPEFF_AMINO_ACID_CHANGE=S635;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_26810944_26811063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:13,12:25:99:340,0,420
12    26816496    rs1375656    T    C    3799.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=39.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3799,283,0
12    26816955    rs2167068    T    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    26818685    rs2035439    A    G    88.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:0,4:4:12:121,12,0
12    26834792    rs11048647    A    C    948.41    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.13;MQ0=0;MQRankSum=0.401;QD=14.59;ReadPosRankSum=0.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:30,35:65:99:978,0,912
12    26834804    rs111626763    T    TACTC    6138.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.0;HRun=0;HaplotypeScore=377.2425;IndelType=I;MQ=56.04;MQ0=0;QD=74.85;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:8,68:82:99:6138,235,0
12    26834805    .    A    C    31.27    HaplotypeScoreFilter13;QDFilter2    AB=0.976;AC=1;AF=0.50;AN=2;BaseQRankSum=1.988;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=65.9166;MQ=56.04;MQ0=0;MQRankSum=1.957;QD=0.38;ReadPosRankSum=-2.419;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    0/1:80,2:82:61.26:61,0,160
12    26839747    rs10743591    A    G    127.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
12    26848410    rs1982385    A    C    388.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540791    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:422,33,0
12    26848663    rs3830260    A    AT    672.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=41.6313;IndelType=I;MQ=61.26;MQ0=0;QD=39.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381340    GT:AD:DP:GQ:PL    1/1:1,16:17:48.16:715,48,0
12    26874132    rs79501431    A    G    247.77    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.395;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.9964;MQ=57.65;MQ0=0;MQRankSum=-0.645;QD=8.85;ReadPosRankSum=0.691;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242737    GT:AD:DP:GQ:PL    0/1:15,13:28:99:278,0,540
12    26874138    rs35227556    G    GT    287.66    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=3.639;DB;DP=29;FS=0.0;HRun=10;HaplotypeScore=136.8829;IndelType=I;MQ=58.12;MQ0=0;MQRankSum=-0.138;QD=9.92;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242737    GT:AD:DP:GQ:PL    0/1:18,11:29:99:327,0,285
12    26943170    rs7314747    A    T    244.26    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.429;DB;DP=22;Dels=0.0;FS=2.048;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.824;QD=11.1;ReadPosRankSum=-1.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242737    GT:AD:DP:GQ:PL    0/1:12,10:22:99:274,0,394
12    26985537    rs11048706    G    C    275.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.133;QD=13.78;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242737    GT:AD:DP:GQ:PL    0/1:8,12:20:79.93:306,0,80
12    26985807    rs11048708    T    G    228.39    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=19;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.722;QD=12.02;ReadPosRankSum=0.241;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242737    GT:AD:DP:GQ:PL    0/1:9,10:19:99:258,0,271
12    27058563    rs7397665    A    G    117.31    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.216;DB;DP=22;Dels=0.0;FS=3.183;HRun=0;HaplotypeScore=0.9578;MQ=58.95;MQ0=0;MQRankSum=-0.111;QD=5.33;ReadPosRankSum=-0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261191    GT:AD:DP:GQ:PL    0/1:16,6:22:99:147,0,590
12    27059073    rs6487580    G    C    276.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.71;MQ0=0;MQRankSum=-0.265;QD=15.39;ReadPosRankSum=-2.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261191    GT:AD:DP:GQ:PL    0/1:9,9:18:99:307,0,309
12    27059224    rs1488052    G    A    2210.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=156;Dels=0.0;FS=0.629;HRun=2;HaplotypeScore=1.929;MQ=59.85;MQ0=0;MQRankSum=2.082;QD=14.17;ReadPosRankSum=-0.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261191    GT:AD:DP:GQ:PL    0/1:78,78:156:99:2240,0,2416
12    27081566    rs2029309    C    G    215.58    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.858;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.454;QD=11.35;ReadPosRankSum=-1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537336    GT:AD:DP:GQ:PL    0/1:11,8:19:99:246,0,401
12    27087703    rs708158    T    C    218.33    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.099;QD=14.56;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261190    GT:AD:DP:GQ:PL    0/1:8,7:15:99:248,0,276
12    27087733    rs708159    C    T    92.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=11.6;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261190    GT:AD:DP:GQ:PL    0/1:4,4:8:99:123,0,140
12    27143579    rs12299714    C    T    620.94    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.728;DB;DP=50;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.602;QD=12.42;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM7SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539741    GT:AD:DP:GQ:PL    0/1:24,26:50:99:651,0,762
12    27143632    rs35719635    C    T    314.50    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.824;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=13.1;ReadPosRankSum=0.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM7SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539741    GT:AD:DP:GQ:PL    0/1:13,11:24:99:344,0,366
12    27152666    rs7314394    T    C    750.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM7SF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343028    GT:AD:DP:GQ:PL    1/1:0,26:26:63.19:784,63,0
12    27175365    rs12811367    G    C    72.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.09;ReadPosRankSum=-0.406;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282892    GT:AD:DP:GQ:PL    0/1:3,3:6:85.44:103,0,85
12    27175494    rs3963548    T    C    1073.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536503    GT:AD:DP:GQ:PL    1/1:0,32:32:87.25:1107,87,0
12    27175640    rs1872191    A    G    594.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282892    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:628,51,0
12    27179759    rs4964032    G    A    79.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282892    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
12    27234505    rs34457591    A    T    410.93    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.339;QD=18.68;ReadPosRankSum=-0.846;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398815    GT:AD:DP:GQ:PL    0/1:7,15:22:99:441,0,221
12    27234878    rs74075111    G    A    1566.68    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=0.535;DB;DP=92;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.656;QD=17.03;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=A180V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27234830_27235416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398815    GT:AD:DP:GQ:PL    0/1:38,54:92:99:1597,0,1108
12    27234914    rs61741737    G    A    1548.45    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=4.141;DB;DP=97;Dels=0.0;FS=1.677;HRun=0;HaplotypeScore=2.8242;MQ=60.0;MQ0=0;MQRankSum=0.404;QD=15.96;ReadPosRankSum=1.468;SNPEFF_AMINO_ACID_CHANGE=P168L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27234830_27235416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398815    GT:AD:DP:GQ:PL    0/1:46,51:97:99:1578,0,1312
12    27292934    rs3759122    G    C    524.24    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=1.279;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=51.39;MQ0=2;MQRankSum=-0.738;QD=17.47;ReadPosRankSum=-0.246;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-582E3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538920    GT:AD:DP:GQ:PL    0/1:11,19:30:99:554,0,281
12    27300420    rs841618    T    C    1668.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;QD=36.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-582E3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540595    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1701,123,0
12    27461984    rs6487599    T    C    345.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK38L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540996    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:378,27,0
12    27468313    rs2346053    A    G    1327.46    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=2.995;DB;DP=80;Dels=0.0;FS=7.019;HRun=0;HaplotypeScore=0.9832;MQ=59.42;MQ0=0;MQRankSum=-1.14;QD=16.59;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK38L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544367    GT:AD:DP:GQ:PL    0/1:35,44:80:99:1357,0,1009
12    27470682    rs2242185    C    T    183.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=20.36;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK38L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545470    GT:AD:DP:GQ:PL    0/1:3,6:9:96.02:213,0,96
12    27470866    rs6487601    G    A    1342.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=T238;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27470829_27470952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK38L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539577    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1376,102,0
12    27533367    rs4964060    A    G    475.17    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.76;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7998;MQ=58.95;MQ0=0;MQRankSum=-0.217;QD=11.88;ReadPosRankSum=-0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539558    GT:AD:DP:GQ:PL    0/1:21,19:40:99:505,0,612
12    27553794    rs2927028    C    T    534.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261178    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:568,48,0
12    27569025    rs1256955    G    T    125.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARNTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261178    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
12    27623433    rs35052632    G    GT    260.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=33.2801;IndelType=I;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:303,21,0
12    27623490    rs776199    A    G    641.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:674,51,0
12    27623558    rs395098    C    T    585.60    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=3.172;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=13.31;ReadPosRankSum=-0.399;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543991    GT:AD:DP:GQ:PL    0/1:21,23:44:99:616,0,632
12    27623728    rs396407    T    C    406.10    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=27;Dels=0.0;FS=4.661;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.22;QD=15.04;ReadPosRankSum=-0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    0/1:12,15:27:99:436,0,414
12    27623751    rs411432    G    A    325.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=20;Dels=0.0;FS=2.086;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.733;QD=16.28;ReadPosRankSum=0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    0/1:8,12:20:99:356,0,263
12    27623816    rs366980    A    C    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:70,0,69
12    27625823    rs386428    A    T    1940.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1973,165,0
12    27625879    rs381905    G    A    850.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:883,66,0
12    27625887    rs401739    T    C    750.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:783,57,0
12    27627805    rs411816    G    A    1805.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=34.72;SNPEFF_AMINO_ACID_CHANGE=A107;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27627719_27627846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1838,132,0
12    27654898    rs61731840    C    T    1253.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_AMINO_ACID_CHANGE=T242;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27654856_27655118;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf70;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298876    GT:AD:DP:GQ:PL    1/1:0,34:34:93.31:1286,93,0
12    27746753    rs3751229    A    C    531.64    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.668;DB;DP=44;Dels=0.0;FS=1.204;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.588;QD=12.08;ReadPosRankSum=-1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    0/1:22,21:44:99:562,0,609
12    27786415    rs7965657    A    G    195.56    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.639;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.437;QD=8.5;ReadPosRankSum=-0.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    0/1:16,7:23:99:226,0,508
12    27786499    rs7965762    A    C    110.29    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=22.06;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    0/1:1,4:5:23.53:140,0,24
12    27800386    rs7959051    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    27800446    rs7959164    T    C    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    27800503    rs7959186    T    C    339.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.44;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.34;MQ0=0;MQRankSum=-0.163;QD=21.24;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    0/1:6,10:16:99:370,0,182
12    27800576    rs34792131    C    CT    826.10    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.562;DB;DP=81;FS=0.0;HRun=7;HaplotypeScore=236.213;IndelType=I;MQ=59.2;MQ0=0;MQRankSum=2.736;QD=10.2;ReadPosRankSum=0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    0/1:50,31:81:99:865,0,1048
12    27800746    rs2194816    G    T    4153.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=59.51;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=V148L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27800662_27800775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4154,319,0
12    27800883    rs2288221    T    C    174.31    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.33;MQ0=0;MQRankSum=-0.993;QD=10.25;ReadPosRankSum=-0.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542187    GT:AD:DP:GQ:PL    0/1:8,9:17:99:204,0,240
12    27802932    rs17224002    A    C    533.55    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8664;MQ=56.62;MQ0=0;MQRankSum=-0.328;QD=15.69;ReadPosRankSum=2.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535047    GT:AD:DP:GQ:PL    0/1:16,18:34:99:564,0,480
12    27807490    rs7979237    C    T    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538433    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
12    27811649    rs10771354    G    T    380.48    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=4.604;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=12.68;ReadPosRankSum=-0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534917    GT:AD:DP:GQ:PL    0/1:17,13:30:99:410,0,517
12    27813754    rs7132997    A    G    848.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534917    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:881,66,0
12    27813903    rs7133222    C    T    575.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534917    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:608,45,0
12    27813961    rs7133231    A    G    244.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534917    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
12    27813973    rs7133328    C    T    200.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=56.62;MQ0=0;QD=28.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534917    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:233,18,0
12    27813981    rs7133545    G    C    209.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534917    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:242,18,0
12    27820302    rs2033024    C    T    670.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:703,51,0
12    27826780    rs2052673    T    G    391.57    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=44;Dels=0.0;FS=1.551;HRun=1;HaplotypeScore=1.7719;MQ=59.48;MQ0=0;MQRankSum=0.255;QD=8.9;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    0/1:22,21:44:99:422,0,727
12    27832196    rs10743606    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537261    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    27832308    rs10743607    G    A    1048.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537261    GT:AD:DP:GQ:PL    1/1:0,28:28:81.27:1082,81,0
12    27832347    rs11049093    C    A    937.47    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.667;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.642;QD=17.04;ReadPosRankSum=0.781;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537261    GT:AD:DP:GQ:PL    0/1:26,29:55:99:967,0,895
12    27841925    rs35617482    C    CT    284.75    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.698;DB;DP=45;FS=1.994;HRun=12;HaplotypeScore=204.8677;IndelType=I;MQ=57.89;MQ0=0;MQRankSum=-0.214;QD=6.33;ReadPosRankSum=-0.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228425    GT:AD:DP:GQ:PL    0/1:23,17:45:99:324,0,342
12    27849796    rs929949    A    G    1897.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.17;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=N101D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27849428_27850566;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REP15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310791    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1930,156,0
12    27850113    rs12819160    A    T    580.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.671;DB;DP=35;Dels=0.0;FS=1.365;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.624;QD=16.6;ReadPosRankSum=-1.006;SNPEFF_AMINO_ACID_CHANGE=E206D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27849428_27850566;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REP15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310791    GT:AD:DP:GQ:PL    0/1:15,20:35:99:611,0,539
12    27867706    rs11049106    C    T    282.92    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.37;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.515;QD=7.65;ReadPosRankSum=0.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000081029    GT:AD:DP:GQ:PL    0/1:25,12:37:99:313,0,725
12    27867727    rs1127787    G    A    384.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=35;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.589;QD=10.99;ReadPosRankSum=-1.027;SNPEFF_AMINO_ACID_CHANGE=G43R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27867713_27867753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000081029    GT:AD:DP:GQ:PL    0/1:21,14:35:99:415,0,696
12    27908019    rs71438704    G    GA    542.97    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.039;DB;DP=47;FS=0.0;HRun=11;HaplotypeScore=156.6848;IndelType=I;MQ=59.94;MQ0=0;MQRankSum=-0.035;QD=11.55;ReadPosRankSum=-0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000081029    GT:AD:DP:GQ:PL    0/1:23,23:47:99:582,0,330
12    27915944    rs11049124    A    G    1607.20    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.97;DB;DP=144;Dels=0.0;FS=2.186;HRun=2;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;MQRankSum=-1.152;QD=11.16;ReadPosRankSum=-0.74;SNPEFF_AMINO_ACID_CHANGE=P250;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27915671_27916329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381273    GT:AD:DP:GQ:PL    0/1:83,61:144:99:1637,0,2652
12    27916206    rs11049125    G    A    1442.42    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.432;DB;DP=106;Dels=0.0;FS=1.588;HRun=0;HaplotypeScore=1.7552;MQ=59.56;MQ0=0;MQRankSum=-0.247;QD=13.61;ReadPosRankSum=-2.198;SNPEFF_AMINO_ACID_CHANGE=T163M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27915671_27916329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381273    GT:AD:DP:GQ:PL    0/1:54,52:106:99:1472,0,1434
12    27916224    rs11049126    A    G    1354.56    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=4.178;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.394;QD=14.41;ReadPosRankSum=-0.083;SNPEFF_AMINO_ACID_CHANGE=L157S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_27915671_27916329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381273    GT:AD:DP:GQ:PL    0/1:49,45:94:99:1385,0,1476
12    27919491    rs9668702    T    G    280.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.766;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.442;QD=15.56;ReadPosRankSum=1.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MANSC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381273    GT:AD:DP:GQ:PL    0/1:9,9:18:99:310,0,295
12    28122893    rs6246    A    G    2479.04    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.688;DB;DP=156;Dels=0.0;FS=23.92;HRun=2;HaplotypeScore=1.786;MQ=60.0;MQ0=0;MQRankSum=-0.292;QD=15.89;ReadPosRankSum=-0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTHLH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201015    GT:AD:DP:GQ:PL    0/1:65,90:156:99:2509,0,1987
12    28412372    rs11049488    G    A    491.98    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=39;Dels=0.05;FS=1.73;HRun=0;HaplotypeScore=4.4313;MQ=55.33;MQ0=0;MQRankSum=-0.652;QD=12.0;ReadPosRankSum=0.247;SNPEFF_AMINO_ACID_CHANGE=A36T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_28412297_28412375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381256    GT:AD:DP:GQ:PL    0/1:14,24:39:99:522,0,309
12    28457618    rs6487674    A    C    2060.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381256    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2094,159,0
12    28544464    rs3741760    G    A    174.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306172    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
12    28602970    rs2272361    A    C    242.06    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.466;QD=13.45;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306172    GT:AD:DP:GQ:PL    0/1:10,8:18:99:272,0,362
12    28605233    rs10843172    A    G    215.15    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=21.51;ReadPosRankSum=-1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539904    GT:AD:DP:GQ:PL    0/1:2,8:10:52.72:245,0,53
12    28605370    .    G    GCAGT    2308.67    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.192;DP=80;FS=3.701;HRun=0;HaplotypeScore=502.1729;IndelType=I;MQ=58.49;MQ0=0;MQRankSum=0.545;QD=28.86;ReadPosRankSum=-1.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539904    GT:AD:DP:GQ:PL    0/1:47,30:80:99:2348,0,2109
12    28605426    rs10771427    G    A    4273.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.72;MQ0=0;QD=35.32;SNPEFF_AMINO_ACID_CHANGE=V110M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_28605411_28605460;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540794    GT:AD:DP:GQ:PL    1/1:0,120:121:99:4274,313,0
12    28636830    rs1511551    G    C    41.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306172    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
12    28637115    rs1511550    G    A    82.46    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=5.15;ReadPosRankSum=0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536154    GT:AD:DP:GQ:PL    0/1:12,4:16:99:112,0,448
12    29273479    rs1353460    T    G    90.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC012150.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410549    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
12    29273760    rs1865763    A    G    256.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC012150.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410549    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
12    29446477    rs34311917    T    TA    207.46    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.38;DB;DP=34;FS=4.472;HRun=9;HaplotypeScore=100.9452;IndelType=I;MQ=60.32;MQ0=0;MQRankSum=0.455;QD=6.1;ReadPosRankSum=0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000182377    GT:AD:DP:GQ:PL    0/1:24,10:34:99:246,0,384
12    29462224    rs6487807    C    G    1386.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=86;Dels=0.0;FS=10.341;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;MQRankSum=-0.147;QD=16.12;ReadPosRankSum=0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552137    GT:AD:DP:GQ:PL    0/1:43,43:86:99:1417,0,1367
12    29485449    rs10743656    G    A    408.31    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.785;DB;DP=23;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=17.75;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360150    GT:AD:DP:GQ:PL    0/1:11,12:23:99:438,0,294
12    29486348    rs11050200    A    C    37.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.358;QD=7.44;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360150    GT:AD:DP:GQ:PL    0/1:3,2:5:67.19:67,0,95
12    29486415    rs4930862    C    T    398.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.44;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360150    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:431,33,0
12    29486745    rs1052583    T    C    679.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.574;DB;DP=70;Dels=0.0;FS=1.089;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.638;QD=9.71;ReadPosRankSum=-0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360150    GT:AD:DP:GQ:PL    0/1:40,30:70:99:710,0,1379
12    29498148    .    C    A    56.29    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.07;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546839    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:86,0,29
12    29501906    rs3815843    A    G    186.82    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=26.69;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546839    GT:AD:DP:GQ:PL    0/1:1,6:7:21.94:217,0,22
12    29501941    rs3764952    A    G    322.51    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.274;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.274;QD=23.04;ReadPosRankSum=1.552;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546839    GT:AD:DP:GQ:PL    0/1:2,12:14:46.54:353,0,47
12    29509450    rs1035606    C    T    258.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.582;DB;DP=25;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.9867;MQ=59.07;MQ0=0;MQRankSum=0.582;QD=10.32;ReadPosRankSum=0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201023    GT:AD:DP:GQ:PL    0/1:15,10:25:99:288,0,514
12    29509513    rs1035607    A    C    42.59    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=3.87;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201023    GT:AD:DP:GQ:PL    0/1:8,3:11:72.58:73,0,295
12    29514833    rs12821708    C    T    64.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.08;ReadPosRankSum=-2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201023    GT:AD:DP:GQ:PL    0/1:4,4:8:94.62:95,0,147
12    29521193    rs12831730    A    G    532.57    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.166;DB;DP=41;Dels=0.0;FS=1.202;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=12.99;ReadPosRankSum=1.905;SNPEFF_AMINO_ACID_CHANGE=T63;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29521174_29521220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000550353    GT:AD:DP:GQ:PL    0/1:23,18:41:99:563,0,739
12    29598373    rs7133304    T    C    848.11    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.646;DB;DP=67;Dels=0.0;FS=2.875;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-1.1;QD=12.66;ReadPosRankSum=-0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:31,36:67:99:878,0,982
12    29604099    rs11050236    C    A    109.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=58.33;MQ0=0;MQRankSum=0.201;QD=7.79;ReadPosRankSum=-1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:7,7:14:99:139,0,240
12    29604392    rs1347570    C    G    1778.53    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=115;Dels=0.0;FS=9.507;HRun=1;HaplotypeScore=3.1971;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=15.47;ReadPosRankSum=0.581;SNPEFF_AMINO_ACID_CHANGE=A881P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29604278_29604502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:59,56:115:99:1809,0,1829
12    29607931    rs2060570    T    C    204.31    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=0.682;QD=6.38;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:21,10:32:99:234,0,485
12    29608449    rs1369904    T    C    207.68    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=15.98;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:5,8:13:99:238,0,167
12    29618273    rs10771537    G    C    91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.067;QD=11.37;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:2,6:8:65.41:121,0,65
12    29628016    rs2043623    G    A    254.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.759;DB;DP=36;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=0.6651;MQ=59.36;MQ0=0;MQRankSum=-0.835;QD=7.07;ReadPosRankSum=-0.515;SNPEFF_AMINO_ACID_CHANGE=A526;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29627994_29628122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:24,12:36:99:284,0,733
12    29630081    rs7975356    G    A    3493.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.494;MQ=59.75;MQ0=0;QD=37.17;SNPEFF_AMINO_ACID_CHANGE=T444I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29630035_29630165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    1/1:0,93:94:99:3494,262,0
12    29639186    rs3847680    T    C    2054.46    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.638;DB;DP=170;Dels=0.0;FS=2.752;HRun=0;HaplotypeScore=3.7488;MQ=59.73;MQ0=0;MQRankSum=-0.131;QD=12.09;ReadPosRankSum=0.376;SNPEFF_AMINO_ACID_CHANGE=K330E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29639179_29639281;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:95,75:170:99:2084,0,2778
12    29642542    rs967182    C    T    570.47    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.535;DB;DP=46;Dels=0.0;FS=1.339;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.134;QD=12.4;ReadPosRankSum=-0.335;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677C1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549411    GT:AD:DP:GQ:PL    0/1:27,19:46:99:600,0,800
12    29642573    rs967181    A    C    683.01    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.922;DB;DP=65;Dels=0.0;FS=4.064;HRun=4;HaplotypeScore=3.8374;MQ=59.65;MQ0=0;MQRankSum=0.69;QD=10.51;ReadPosRankSum=1.734;SNPEFF_AMINO_ACID_CHANGE=W228G;SNPEFF_CODON_CHANGE=Tgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29642553_29642704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:39,26:65:99:713,0,1269
12    29642927    rs10771543    G    A    79.01    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.75;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677C1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549411    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:109,0,30
12    29648076    rs10843437    T    C    352.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.538;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7627;MQ=59.11;MQ0=0;MQRankSum=-0.872;QD=13.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:13,13:26:99:383,0,412
12    29648275    rs10843438    G    A    3423.69    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=4.413;DB;DP=223;Dels=0.0;FS=2.281;HRun=0;HaplotypeScore=2.8286;MQ=59.69;MQ0=0;MQRankSum=1.578;QD=15.35;ReadPosRankSum=0.854;SNPEFF_AMINO_ACID_CHANGE=R133C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29648218_29648390;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=OVCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318184    GT:AD:DP:GQ:PL    0/1:108,115:223:99:3424,0,3031
12    29650702    rs822879    C    T    368.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=24.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256062    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:401,33,0
12    29650870    rs822878    T    C    78.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256062    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
12    29688959    rs299455    T    C    105.92    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.77;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381224    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,173
12    29710144    rs299480    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256062    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    29736480    rs2113879    A    G    183.26    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=7.97;ReadPosRankSum=0.902;SNPEFF_AMINO_ACID_CHANGE=H189;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29736340_29736507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540901    GT:AD:DP:GQ:PL    0/1:16,7:23:99:213,0,480
12    29736523    rs2288230    G    T    288.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.473;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=13.13;ReadPosRankSum=-0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256062    GT:AD:DP:GQ:PL    0/1:12,10:22:99:319,0,377
12    29736553    rs2113880    A    G    267.37    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.488;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.549;QD=16.71;ReadPosRankSum=1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256062    GT:AD:DP:GQ:PL    0/1:6,10:16:99:297,0,178
12    29786413    rs11050329    T    C    97.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.15;ReadPosRankSum=2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256062    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,144
12    29904704    rs146096763    C    T    135.07    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.626;DB;DP=18;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.54;QD=7.5;ReadPosRankSum=-1.087;SNPEFF_AMINO_ACID_CHANGE=R170Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_29904599_29904805;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256062    GT:AD:DP:GQ:PL    0/1:11,7:18:99:165,0,330
12    29921074    rs302316    A    G    305.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256062    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:338,24,0
12    30787228    rs10843797    C    T    519.60    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.856;DB;DP=42;Dels=0.0;FS=1.345;HRun=0;HaplotypeScore=1.8583;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=12.37;ReadPosRankSum=-0.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256079    GT:AD:DP:GQ:PL    0/1:20,22:42:99:550,0,692
12    30809492    rs7974489    G    A    172.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256079    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
12    30814043    rs67741303    CTATTA    C    793.14    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=5.089;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=202.979;IndelType=D;MQ=59.37;MQ0=0;MQRankSum=-0.51;QD=20.34;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256079    GT:AD:DP:GQ:PL    0/1:24,15:39:99:832,0,1839
12    30814259    rs10771753    C    T    471.81    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.286;DB;DP=23;Dels=0.0;FS=2.78;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.785;QD=20.51;ReadPosRankSum=-0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256079    GT:AD:DP:GQ:PL    0/1:9,14:23:99:502,0,271
12    30815157    rs2118780    A    T    376.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256079    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
12    30818081    rs10843807    A    G    200.51    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.31;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.78;MQ0=0;MQRankSum=1.733;QD=10.55;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542464    GT:AD:DP:GQ:PL    0/1:12,7:19:99:231,0,426
12    30818406    rs10843808    T    G    118.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.8;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542464    GT:AD:DP:GQ:PL    0/1:2,4:6:64.35:149,0,64
12    30818936    rs12371883    C    T    134.72    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=19.25;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542464    GT:AD:DP:GQ:PL    0/1:2,5:7:62.93:165,0,63
12    30822240    rs7955420    C    A    293.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=4.0;DB;DP=25;Dels=0.0;FS=0.0;HRun=13;HaplotypeScore=0.8321;MQ=58.58;MQ0=0;MQRankSum=0.093;QD=11.75;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256079    GT:AD:DP:GQ:PL    0/1:10,15:25:99:324,0,236
12    30823971    rs1054426    A    G    1410.84    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=3.404;DB;DP=129;Dels=0.0;FS=0.668;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.007;QD=10.94;ReadPosRankSum=1.204;SNPEFF_AMINO_ACID_CHANGE=L118;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_30823896_30824030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544829    GT:AD:DP:GQ:PL    0/1:74,55:129:99:1441,0,2225
12    30827086    rs2289301    G    C    387.48    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.109;QD=17.61;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256079    GT:AD:DP:GQ:PL    0/1:8,14:22:99:417,0,216
12    30866888    rs2099028    T    C    352.96    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.805;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=14.12;ReadPosRankSum=0.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPRIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438006    GT:AD:DP:GQ:PL    0/1:14,11:25:99:383,0,483
12    30868002    rs13656    C    T    648.30    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.081;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.71;MQ0=0;MQRankSum=1.824;QD=8.21;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=V513;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_30867893_30868075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308433    GT:AD:DP:GQ:PL    0/1:54,24:79:99:678,0,1728
12    30871866    rs7304976    C    T    131.35    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=9.38;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPRIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251071    GT:AD:DP:GQ:PL    0/1:9,5:14:99:161,0,328
12    30878859    rs79960947    G    C    615.86    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.066;DB;DP=52;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.6911;MQ=59.56;MQ0=0;MQRankSum=-0.634;QD=11.84;ReadPosRankSum=0.975;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPRIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538387    GT:AD:DP:GQ:PL    0/1:28,24:52:99:646,0,870
12    30881809    rs2304630    T    C    1576.94    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.321;DB;DP=104;Dels=0.0;FS=2.724;HRun=0;HaplotypeScore=1.8136;MQ=59.82;MQ0=0;MQRankSum=-0.134;QD=15.16;ReadPosRankSum=-1.302;SNPEFF_AMINO_ACID_CHANGE=M186V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_30881582_30882259;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPRIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308433    GT:AD:DP:GQ:PL    0/1:44,60:104:99:1607,0,1434
12    30887783    rs72163487    A    AAC    249.41    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=149.0091;IndelType=I;MQ=54.17;MQ0=1;MQRankSum=-0.612;QD=11.34;ReadPosRankSum=-1.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPRIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540436    GT:AD:DP:GQ:PL    0/1:15,6:21:99:288,0,175
12    30887820    rs7134998    A    T    134.16    HaplotypeScoreFilter13    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.656;DB;DP=32;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=13.2116;MQ=56.18;MQ0=1;MQRankSum=0.178;QD=4.07;ReadPosRankSum=-0.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPRIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540436    GT:AD:DP:GQ:PL    0/1:16,16:32:99:164,0,206
12    30906875    rs33255    C    T    286.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=35.81;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_30906278_30907448;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CAPRIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251071    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
12    31131712    rs35097    T    C    275.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261177    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:309,24,0
12    31132479    rs35096    A    C    1236.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5873;MQ=59.39;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261177    GT:AD:DP:GQ:PL    1/1:0,38:38:96.27:1269,96,0
12    31135478    rs35089    T    C    1126.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_AMINO_ACID_CHANGE=C146;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_31135467_31135625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544427    GT:AD:DP:GQ:PL    1/1:0,36:36:93.25:1160,93,0
12    31135579    rs2075333    T    C    566.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.96;SNPEFF_AMINO_ACID_CHANGE=V119A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_31135467_31135625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535215    GT:AD:DP:GQ:PL    1/1:0,21:21:54.09:599,54,0
12    31135905    rs888473    A    T    94.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261177    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
12    31237026    rs28559720    A    G    1076.05    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=92;Dels=0.0;FS=8.641;HRun=0;HaplotypeScore=2.1445;MQ=46.09;MQ0=0;MQRankSum=-6.289;QD=11.7;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228264    GT:AD:DP:GQ:PL    0/1:40,51:92:99:1106,0,1026
12    31237196    rs10843879    T    C    193.47    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.37;MQ0=0;MQRankSum=-1.666;QD=19.35;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228264    GT:AD:DP:GQ:PL    0/1:2,8:10:52.03:223,0,52
12    31237700    rs3881296    G    A    105.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.95;MQ0=0;MQRankSum=0.0;QD=17.52;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535317    GT:AD:DP:GQ:PL    0/1:2,4:6:55.87:135,0,56
12    31238075    rs4931428    G    A    150.34    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=40.47;MQ0=3;MQRankSum=-0.893;QD=7.91;ReadPosRankSum=-0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535317    GT:AD:DP:GQ:PL    0/1:11,8:19:99:180,0,291
12    31238946    rs75310600    A    G    89.16    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.435;DB;DP=17;Dels=0.0;FS=2.187;HRun=1;HaplotypeScore=0.0;MQ=38.85;MQ0=0;MQRankSum=-2.752;QD=5.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535317    GT:AD:DP:GQ:PL    0/1:9,7:17:99:119,0,285
12    31240622    rs7308494    C    G    38.78    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=-0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535317    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:69,0,30
12    31240862    rs7308754    A    T    538.06    MQFilter40    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=1.089;DB;DP=88;Dels=0.0;FS=3.669;HRun=0;HaplotypeScore=0.0;MQ=32.35;MQ0=9;MQRankSum=1.702;QD=6.11;ReadPosRankSum=-1.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535317    GT:AD:DP:GQ:PL    0/1:54,34:88:99:568,0,1114
12    31240925    rs7308773    A    G    647.51    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.538;DB;DP=66;Dels=0.0;FS=9.344;HRun=0;HaplotypeScore=0.0;MQ=45.15;MQ0=0;MQRankSum=-1.95;QD=9.81;ReadPosRankSum=-0.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535317    GT:AD:DP:GQ:PL    0/1:39,27:66:99:677,0,1078
12    31240960    rs7309189    G    A    420.13    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.018;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.68;MQ0=0;MQRankSum=-1.975;QD=9.55;ReadPosRankSum=0.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535317    GT:AD:DP:GQ:PL    0/1:27,17:44:99:450,0,827
12    31242232    rs4081649    G    T    191.05    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=0.842;DB;DP=43;Dels=0.0;FS=1.411;HRun=0;HaplotypeScore=0.0;MQ=54.17;MQ0=0;MQRankSum=-4.592;QD=4.44;ReadPosRankSum=0.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:33,10:43:99:221,0,1136
12    31242271    rs2005896    G    A    355.50    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=41;Dels=0.0;FS=10.606;HRun=0;HaplotypeScore=0.0;MQ=52.47;MQ0=0;MQRankSum=3.137;QD=8.67;ReadPosRankSum=-0.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:23,18:41:99:385,0,531
12    31242307    rs4031315    T    C    109.22    PASS    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=41;Dels=0.0;FS=1.854;HRun=0;HaplotypeScore=8.7836;MQ=54.02;MQ0=0;MQRankSum=-4.041;QD=2.66;ReadPosRankSum=1.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:33,8:41:99:139,0,1150
12    31242314    rs2005897    T    C    557.18    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=43;Dels=0.0;FS=1.411;HRun=2;HaplotypeScore=9.3619;MQ=54.31;MQ0=0;MQRankSum=0.645;QD=12.96;ReadPosRankSum=-0.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:23,20:43:99:587,0,755
12    31242399    rs3881298    T    C    945.16    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.157;DB;DP=64;Dels=0.0;FS=11.718;HRun=0;HaplotypeScore=0.0;MQ=53.62;MQ0=1;MQRankSum=-0.827;QD=14.77;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=C256;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_31242337_31242424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438391    GT:AD:DP:GQ:PL    0/1:29,35:64:99:975,0,850
12    31242440    rs2075318    A    G    528.71    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.99;DB;DP=50;Dels=0.0;FS=1.248;HRun=0;HaplotypeScore=4.6584;MQ=53.91;MQ0=0;MQRankSum=-2.738;QD=10.57;ReadPosRankSum=-0.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:29,21:50:99:559,0,857
12    31242718    rs2005898    T    C    54.84    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=44.76;MQ0=0;MQRankSum=1.58;QD=5.48;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:7,3:10:84.84:85,0,232
12    31244846    rs1808348    C    G    329.59    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.984;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=57.01;MQ0=0;MQRankSum=-1.724;QD=12.68;ReadPosRankSum=-0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:12,14:26:99:360,0,279
12    31244924    rs1808349    G    A    114.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.04;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:144,0,67
12    31245741    rs2075321    A    G    303.68    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.042;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.58;MQ0=3;MQRankSum=-4.976;QD=6.6;ReadPosRankSum=-0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:29,17:46:99:334,0,970
12    31245916    rs61273537    C    T    530.30    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.441;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4916;MQ=54.43;MQ0=0;MQRankSum=-0.973;QD=17.11;ReadPosRankSum=0.853;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:14,17:31:99:560,0,444
12    31246371    rs10843882    C    T    286.79    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=-0.533;QD=20.49;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415475    GT:AD:DP:GQ:PL    0/1:5,9:14:99:317,0,141
12    31247480    rs12816960    T    G    385.40    MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.036;DB;DP=63;Dels=0.0;FS=4.998;HRun=5;HaplotypeScore=2.4513;MQ=37.01;MQ0=9;MQRankSum=-3.185;QD=6.12;ReadPosRankSum=-0.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438391    GT:AD:DP:GQ:PL    0/1:34,28:63:99:415,0,1023
12    31249861    rs2075322    C    G    659.59    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.26;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=48.15;MQ0=3;MQRankSum=-1.186;QD=10.31;ReadPosRankSum=-0.798;SNPEFF_AMINO_ACID_CHANGE=Q292E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_31249793_31249924;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404673    GT:AD:DP:GQ:PL    0/1:35,29:64:99:690,0,1081
12    31253785    rs146933064    G    A    170.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=14.2;ReadPosRankSum=-1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536580    GT:AD:DP:GQ:PL    0/1:6,6:12:99:200,0,200
12    31253995    rs1046456    C    T    1509.66    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=124;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8924;MQ=58.73;MQ0=0;MQRankSum=-0.577;QD=12.17;ReadPosRankSum=-0.428;SNPEFF_AMINO_ACID_CHANGE=L386;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_31253961_31254064;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404673    GT:AD:DP:GQ:PL    0/1:60,64:124:99:1540,0,1569
12    31254221    rs6487974    T    G    81.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;MQRankSum=0.358;QD=16.21;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536580    GT:AD:DP:GQ:PL    0/1:2,3:5:59.73:111,0,60
12    31254256    rs6487975    C    T    35.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.0;QD=8.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536580    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:66,0,69
12    31254642    rs7952861    T    A    197.56    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.99;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6807;MQ=51.11;MQ0=2;MQRankSum=0.092;QD=7.6;ReadPosRankSum=0.459;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536580    GT:AD:DP:GQ:PL    0/1:18,8:26:99:228,0,558
12    31254701    rs7966366    G    T    400.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.03;DB;DP=40;Dels=0.0;FS=3.655;HRun=0;HaplotypeScore=1.6671;MQ=52.86;MQ0=2;MQRankSum=0.902;QD=10.0;ReadPosRankSum=-0.192;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536580    GT:AD:DP:GQ:PL    0/1:24,16:40:99:430,0,621
12    31254752    rs7966272    C    T    635.35    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=47;Dels=0.0;FS=1.149;HRun=1;HaplotypeScore=0.8321;MQ=53.73;MQ0=0;MQRankSum=0.583;QD=13.52;ReadPosRankSum=-0.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536580    GT:AD:DP:GQ:PL    0/1:25,22:47:99:665,0,772
12    31254959    rs7966523    C    T    258.83    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.054;DB;DP=19;Dels=0.0;FS=5.237;HRun=0;HaplotypeScore=0.0;MQ=43.28;MQ0=3;MQRankSum=-2.115;QD=13.62;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538740    GT:AD:DP:GQ:PL    0/1:8,11:19:99:289,0,172
12    31255263    rs10771803    G    A    1337.74    HaplotypeScoreFilter13    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=101;Dels=0.0;FS=8.408;HRun=0;HaplotypeScore=18.7725;MQ=47.11;MQ0=2;MQRankSum=-5.846;QD=13.24;ReadPosRankSum=1.089;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538740    GT:AD:DP:GQ:PL    0/1:44,57:101:99:1368,0,1401
12    31255272    .    C    A    303.25    HaplotypeScoreFilter13;SnpCluster    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.524;DP=98;Dels=0.0;FS=7.139;HRun=0;HaplotypeScore=38.2355;MQ=47.64;MQ0=2;MQRankSum=-3.724;QD=3.09;ReadPosRankSum=4.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538740    GT:AD:DP:GQ:PL    0/1:79,18:98:99:333,0,2308
12    31255278    .    T    C    286.32    HaplotypeScoreFilter13;SnpCluster    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=3.827;DP=96;Dels=0.0;FS=5.348;HRun=1;HaplotypeScore=38.3768;MQ=48.1;MQ0=2;MQRankSum=-4.06;QD=2.98;ReadPosRankSum=4.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538740    GT:AD:DP:GQ:PL    0/1:78,18:96:99:316,0,2353
12    31255280    rs61918673    G    A    1343.67    HaplotypeScoreFilter13;SnpCluster    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.272;DB;DP=95;Dels=0.0;FS=4.032;HRun=0;HaplotypeScore=38.3768;MQ=47.62;MQ0=2;MQRankSum=-5.171;QD=14.14;ReadPosRankSum=1.792;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538740    GT:AD:DP:GQ:PL    0/1:41,54:95:99:1374,0,1214
12    31255626    rs10771804    T    C    43.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.82;MQ0=0;MQRankSum=-2.383;QD=4.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538740    GT:AD:DP:GQ:PL    0/1:6,4:10:73.22:73,0,212
12    31256075    rs3825318    G    A    90.13    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=52.95;MQ0=0;MQRankSum=-0.354;QD=6.44;ReadPosRankSum=-0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538740    GT:AD:DP:GQ:PL    0/1:10,4:14:99:120,0,350
12    31256164    rs3825321    G    T    218.40    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.92;MQ0=1;MQRankSum=-0.762;QD=21.84;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537136    GT:AD:DP:GQ:PL    0/1:3,7:10:41.60:248,0,42
12    31256219    rs3825324    C    T    230.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.609;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.92;MQ0=0;MQRankSum=0.421;QD=12.83;ReadPosRankSum=-0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537136    GT:AD:DP:GQ:PL    0/1:6,12:18:99:261,0,200
12    31256220    rs3825325    A    G    233.70    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.2;MQ0=0;MQRankSum=0.833;QD=12.3;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537136    GT:AD:DP:GQ:PL    0/1:6,13:19:99:264,0,205
12    31256342    rs3925641    G    A    199.49    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.646;DB;DP=18;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=0.0;MQ=36.46;MQ0=1;MQRankSum=-0.818;QD=11.08;ReadPosRankSum=-0.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537136    GT:AD:DP:GQ:PL    0/1:9,9:18:99:229,0,192
12    31256368    rs3925642    G    T    172.82    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=19;Dels=0.0;FS=12.208;HRun=0;HaplotypeScore=0.9469;MQ=42.02;MQ0=1;MQRankSum=1.01;QD=9.1;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537136    GT:AD:DP:GQ:PL    0/1:10,9:19:99:203,0,184
12    31256546    rs1046457    G    A    484.58    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.252;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8305;MQ=49.13;MQ0=0;MQRankSum=-6.421;QD=7.94;ReadPosRankSum=1.023;SNPEFF_AMINO_ACID_CHANGE=V808I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_31256511_31256665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350437    GT:AD:DP:GQ:PL    0/1:32,29:61:99:515,0,745
12    31256905    rs1046458    T    C    270.03    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.085;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=47.52;MQ0=0;MQRankSum=-2.155;QD=13.5;ReadPosRankSum=0.803;SNPEFF_AMINO_ACID_CHANGE=C951R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_31256741_31257725;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407793    GT:AD:DP:GQ:PL    0/1:7,13:20:99:300,0,232
12    31265823    rs2302848    A    G    174.96    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.106;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.94;MQ0=3;MQRankSum=-5.4;QD=3.02;ReadPosRankSum=-2.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:41,17:58:99:205,0,1380
12    31265872    rs2302849    C    T    706.57    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.932;DB;DP=99;Dels=0.0;FS=2.509;HRun=0;HaplotypeScore=3.7136;MQ=49.68;MQ0=6;MQRankSum=-6.836;QD=7.14;ReadPosRankSum=0.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:57,42:99:99:737,0,1928
12    31265925    rs2302850    C    G    1188.29    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.925;DB;DP=132;Dels=0.0;FS=12.362;HRun=0;HaplotypeScore=0.9989;MQ=50.7;MQ0=3;MQRankSum=-8.035;QD=9.0;ReadPosRankSum=-0.058;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000518559    GT:AD:DP:GQ:PL    0/1:75,57:132:99:1218,0,2410
12    31265983    rs1053534    G    A    1390.75    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.394;DB;DP=140;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4679;MQ=50.44;MQ0=0;MQRankSum=-7.996;QD=9.93;ReadPosRankSum=-0.514;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:79,61:140:99:1421,0,2509
12    31266042    rs2302853    C    T    1347.34    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.288;DB;DP=114;Dels=0.0;FS=0.839;HRun=0;HaplotypeScore=0.0;MQ=47.41;MQ0=2;MQRankSum=-5.491;QD=11.82;ReadPosRankSum=0.868;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:61,53:114:99:1377,0,1932
12    31267744    rs7968684    A    C    894.05    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=0.916;DB;DP=133;Dels=0.0;FS=6.121;HRun=0;HaplotypeScore=3.9893;MQ=41.67;MQ0=7;MQRankSum=-3.051;QD=6.72;ReadPosRankSum=-0.129;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:83,50:133:99:924,0,2172
12    31269189    rs25559    C    CATCAT    847.67    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.54;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=137.3854;IndelType=I;MQ=49.54;MQ0=0;MQRankSum=-4.328;QD=26.49;ReadPosRankSum=-1.317;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:24,6:31:99:887,0,1023
12    31269551    rs12426866    T    C    30.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=0.0;QD=7.53;ReadPosRankSum=-1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:2,2:4:60.11:60,0,70
12    31269770    rs2287465    A    G    33.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.23;MQ0=0;MQRankSum=-1.026;QD=8.41;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:2,2:4:63.63:64,0,73
12    31270171    rs7301557    T    C    65.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.21;MQ0=1;MQRankSum=-2.074;QD=4.64;ReadPosRankSum=0.377;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391394    GT:AD:DP:GQ:PL    0/1:7,7:14:95:95,0,214
12    31270588    rs11051248    C    T    260.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:293,24,0
12    31270702    rs7316478    A    G    156.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=56.04;MQ0=0;QD=26.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,5:6:15.05:189,15,0
12    31271000    rs10843884    T    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    31271027    rs10843885    A    C    103.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=25.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
12    31278031    rs4931443    T    A    84.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.73;MQ0=0;QD=28.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
12    31282765    rs2536839    A    T    940.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.85;MQ0=3;QD=26.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,35:35:75.24:974,75,0
12    31282784    rs35666624    A    G    1122.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.96;MQ0=3;QD=26.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,43:43:87.28:1155,87,0
12    31283446    rs140298932    T    G    879.63    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.391;DB;DP=108;Dels=0.0;FS=5.529;HRun=1;HaplotypeScore=1.782;MQ=34.1;MQ0=1;MQRankSum=-1.181;QD=8.14;ReadPosRankSum=-1.362;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    0/1:60,48:108:99:910,0,1459
12    31284616    rs10771806    C    T    321.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:354,27,0
12    31285101    rs2933405    A    G    488.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.95;MQ0=1;QD=32.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:522,42,0
12    31285169    rs2287449    A    T    1494.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=50.88;MQ0=1;QD=31.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1528,120,0
12    31286189    rs3844571    T    C    901.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=26.87;MQ0=20;QD=18.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,48:48:75.21:934,75,0
12    31286338    rs4124455    G    T    87.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
12    31288835    rs34598544    G    GA    497.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=41.4971;IndelType=I;MQ=26.32;MQ0=9;QD=17.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:2,26:15:39.12:539,39,0
12    31288884    rs4931444    G    T    1797.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.18;MQ0=6;QD=33.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1831,141,0
12    31288955    rs11051266    G    A    2276.45    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=6.415;DB;DP=158;Dels=0.0;FS=8.562;HRun=4;HaplotypeScore=0.0;MQ=51.57;MQ0=8;MQRankSum=1.484;QD=14.41;ReadPosRankSum=0.138;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    0/1:77,81:158:99:2306,0,2011
12    31297722    rs55758709    C    T    573.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.05;MQ0=2;QD=27.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,20:21:54.11:607,54,0
12    31297871    rs12309295    G    C    5335.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4947;MQ=47.92;MQ0=2;QD=33.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5335,403,0
12    31298101    rs2536875    T    C    761.36    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.6;MQ0=3;QD=21.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,34:35:69.17:794,69,0
12    31298250    rs115596083    A    G    301.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.68;MQ0=2;QD=23.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:334,30,0
12    31300754    rs116358569    T    C    2811.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=40.04;MQ0=0;QD=29.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,94:94:99:2845,244,0
12    31300891    rs56144986    C    A    7169.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.656;DB;DP=223;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8484;MQ=48.03;MQ0=2;MQRankSum=-0.245;QD=32.15;ReadPosRankSum=-0.925;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:1,222:223:99:7169,532,0
12    31301888    rs11051274    T    C    708.36    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.961;DB;DP=71;Dels=0.0;FS=15.218;HRun=0;HaplotypeScore=1.7005;MQ=53.92;MQ0=0;MQRankSum=1.247;QD=9.98;ReadPosRankSum=0.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    0/1:45,26:71:99:738,0,1439
12    31302590    .    TCTGG    T    122.51    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DP=8;FS=0.0;HRun=0;HaplotypeScore=132.0123;IndelType=D;MQ=43.83;MQ0=0;MQRankSum=-0.742;QD=15.31;ReadPosRankSum=-0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    0/1:1,7:8:2.97:161,0,3
12    31307173    rs4931449    A    T    493.11    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.657;QD=12.33;ReadPosRankSum=-0.055;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    0/1:23,17:40:99:523,0,798
12    31310983    rs7971718    G    A    1531.94    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.16;DB;DP=113;Dels=0.0;FS=1.544;HRun=0;HaplotypeScore=2.8769;MQ=58.87;MQ0=0;MQRankSum=2.255;QD=13.56;ReadPosRankSum=1.092;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    0/1:61,52:113:99:1562,0,1624
12    31311973    rs61733843    G    A    1824.99    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.96;DB;DP=138;Dels=0.0;FS=2.198;HRun=1;HaplotypeScore=4.6546;MQ=47.86;MQ0=0;MQRankSum=-0.051;QD=13.22;ReadPosRankSum=0.702;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    0/1:77,61:138:99:1855,0,2445
12    31359159    rs5797404    C    CAATGGTAA    3306.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=218.552;IndelType=I;MQ=35.02;MQ0=0;QD=103.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:19,13:32:84.29:3306,84,0
12    31359210    rs2164498    A    G    221.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.61;MQ0=0;QD=17.06;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-551L14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398963    GT:AD:DP:GQ:PL    1/1:0,13:13:21.06:255,21,0
12    31545103    rs708218    T    C    1480.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.07;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1513,132,0
12    31545381    rs792874    A    G    1664.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1698,138,0
12    31551350    rs1798769    C    T    507.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:540,39,0
12    31555688    rs708199    G    T    1125.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1159,87,0
12    31562359    rs111670680    GA    G    154.59    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.185;DB;DP=25;FS=0.0;HRun=14;HaplotypeScore=207.3631;IndelType=D;MQ=47.05;MQ0=0;MQRankSum=0.829;QD=6.18;ReadPosRankSum=0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    0/1:13,12:25:11.73:193,0,12
12    31568221    rs793159    C    T    1128.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    1/1:0,30:30:90.27:1161,90,0
12    31577378    rs68117503    A    AT    588.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=9;HaplotypeScore=46.5695;IndelType=I;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537061    GT:AD:DP:GQ:PL    1/1:0,19:19:57.15:631,57,0
12    31595978    rs10640984    T    TTG    250.03    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=31.3127;IndelType=I;MQ=62.89;MQ0=0;MQRankSum=0.067;QD=22.73;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    0/1:5,6:11:44.47:289,0,44
12    31648728    rs143241018    GA    G    1896.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=8;HaplotypeScore=183.0882;IndelType=D;MQ=61.07;MQ0=0;QD=27.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    1/1:2,68:70:99:1938,201,0
12    31649001    rs12816170    T    C    71.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306833    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
12    31814741    rs7959989    G    C    386.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357721    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:420,30,0
12    31824971    rs1072778    T    C    42.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.25;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536761    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
12    31850064    rs10734798    G    T    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457428    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
12    31850220    rs2388926    C    T    757.81    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.052;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.577;QD=13.78;ReadPosRankSum=0.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457428    GT:AD:DP:GQ:PL    0/1:32,23:55:99:788,0,1128
12    31851044    rs7974038    A    G    215.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457428    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
12    32134638    rs2166807    T    C    1339.32    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=83;Dels=0.0;FS=3.157;HRun=1;HaplotypeScore=1.6483;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=16.14;ReadPosRankSum=0.822;SNPEFF_AMINO_ACID_CHANGE=L250P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_32133812_32138891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312561    GT:AD:DP:GQ:PL    0/1:36,45:83:99:1369,0,1118
12    32134926    rs3207618    G    A    672.83    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=53;Dels=0.0;FS=2.684;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.66;QD=12.69;ReadPosRankSum=2.503;SNPEFF_AMINO_ACID_CHANGE=S346N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_32133812_32138891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312561    GT:AD:DP:GQ:PL    0/1:30,23:53:99:703,0,1019
12    32135441    rs3759301    T    C    1785.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=S518P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_32133812_32138891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312561    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1818,135,0
12    32138924    rs7302975    T    C    317.84    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.567;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.913;QD=11.35;ReadPosRankSum=-0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381054    GT:AD:DP:GQ:PL    0/1:17,11:28:99:348,0,556
12    32446835    rs261877    G    A    91.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281474    GT:AD:DP:GQ:PL    1/1:0,6:6:12.01:124,12,0
12    32446901    rs261878    T    C    146.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.562;QD=9.15;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281474    GT:AD:DP:GQ:PL    0/1:8,8:16:99:176,0,225
12    32447291    rs171884    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281474    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    32480327    rs145320294    G    A    565.37    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.319;QD=15.28;ReadPosRankSum=0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281474    GT:AD:DP:GQ:PL    0/1:18,19:37:99:595,0,553
12    32490369    rs2388987    G    A    278.16    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.373;DB;DP=21;Dels=0.0;FS=6.69;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.528;QD=13.25;ReadPosRankSum=1.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547680    GT:AD:DP:GQ:PL    0/1:11,10:21:99:308,0,391
12    32490850    rs1057779    C    G    252.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.825;QD=21.01;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547680    GT:AD:DP:GQ:PL    0/1:4,8:12:99:282,0,131
12    32491626    rs1471909    G    A    651.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.478;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=57.45;MQ0=0;MQRankSum=1.057;QD=14.17;ReadPosRankSum=-0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552160    GT:AD:DP:GQ:PL    0/1:23,23:46:99:682,0,677
12    32491969    rs2291419    C    T    389.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=59.03;MQ0=0;MQRankSum=-0.239;QD=16.21;ReadPosRankSum=-0.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552160    GT:AD:DP:GQ:PL    0/1:9,15:24:99:419,0,295
12    32530257    rs7298381    G    T    89.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281474    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    32530385    rs7298319    C    G    967.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=37.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281474    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:1001,75,0
12    32530580    rs11051966    G    A    799.64    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=57;Dels=0.0;FS=10.626;HRun=2;HaplotypeScore=2.992;MQ=59.6;MQ0=0;MQRankSum=-0.271;QD=14.03;ReadPosRankSum=1.421;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BICD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281474    GT:AD:DP:GQ:PL    0/1:31,26:57:99:830,0,892
12    32854602    rs9737752    G    A    488.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266479    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:521,39,0
12    32890685    rs2177704    C    T    200.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548151    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
12    32945495    rs7956824    C    T    1337.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000070846    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1371,108,0
12    32945721    rs6488091    G    T    313.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000070846    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:347,27,0
12    32945769    rs6488092    G    C    195.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000070846    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:228,18,0
12    32948969    rs71447623    CA    C    668.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=158.8802;IndelType=D;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000070846    GT:AD:DP:GQ:PL    1/1:2,20:22:57.02:711,57,0
12    32955114    rs11459735    A    AT    214.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=10;HaplotypeScore=29.3325;IndelType=I;MQ=60.0;MQ0=0;QD=26.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549461    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:256,24,0
12    32955647    rs7975824    C    A    214.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000070846    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
12    32974245    rs10772008    C    T    644.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546498    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:677,51,0
12    33535510    rs74075211    T    G    283.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.878;DB;DP=21;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.249;QD=13.52;ReadPosRankSum=1.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228567    GT:AD:DP:GQ:PL    0/1:12,9:21:99:314,0,418
12    33578997    rs141090671    TCA    T    781.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=187.2148;IndelType=D;MQ=58.98;MQ0=0;QD=21.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228567    GT:AD:DP:GQ:PL    1/1:14,21:36:83.29:823,83,0
12    34175301    rs12372721    C    T    222.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538927    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:255,21,0
12    34175313    rs34004926    G    GA    362.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=36.9032;IndelType=I;MQ=62.36;MQ0=0;QD=40.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538927    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:405,27,0
12    34175508    rs12367881    T    C    5071.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DB;DP=160;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.57;MQ0=0;MQRankSum=1.507;QD=31.7;ReadPosRankSum=1.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541178    GT:AD:DP:GQ:PL    1/1:1,159:160:99:5072,388,0
12    38596667    rs7301806    G    A    3196.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=33.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA_pseudogene;SNPEFF_GENE_NAME=AC117372.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466980    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3229,247,0
12    38710459    rs4882284    A    G    165.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548240    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
12    38710523    rs7315028    G    A    705.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548240    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:739,54,0
12    38710583    rs7296576    C    T    1974.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_38710380_38710866;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308742    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2007,153,0
12    38711070    rs1872846    A    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308742    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    38712142    rs6582584    C    G    3578.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=51.26;MQ0=2;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=A84G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_38712063_38712260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308742    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3579,277,0
12    38715467    rs7306030    G    A    1860.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=49.63;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548240    GT:AD:DP:GQ:PL    1/1:0,55:56:99:1894,147,0
12    39071212    rs140116968    G    A    281.23    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=0.286;QD=14.06;ReadPosRankSum=0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331366    GT:AD:DP:GQ:PL    0/1:11,9:20:99:311,0,351
12    39087687    rs826877    A    C    608.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.71;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331366    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:642,48,0
12    39124173    rs5797589    G    GA    1805.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=6;HaplotypeScore=109.5216;IndelType=I;MQ=60.6;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331366    GT:AD:DP:GQ:PL    1/1:3,49:52:99:1847,147,0
12    39233771    rs3803020    A    G    178.55    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.551;DB;DP=28;Dels=0.0;FS=7.129;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.907;QD=6.38;ReadPosRankSum=0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CPNE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331366    GT:AD:DP:GQ:PL    0/1:20,8:28:99:209,0,761
12    39735348    rs79089655    C    A    1147.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;QD=30.2;SNPEFF_AMINO_ACID_CHANGE=G614V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_39735307_39735424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KIF21A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361961    GT:AD:DP:GQ:PL    1/1:0,38:38:96.27:1181,96,0
12    39994119    rs183974170    A    C    111.22    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.956;QD=13.9;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308666    GT:AD:DP:GQ:PL    0/1:3,5:8:82.92:141,0,83
12    40010863    rs61736446    C    T    2106.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=K349;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40010790_40010970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308666    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2139,160,0
12    40011025    rs66517223    CT    C    97.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=12;HaplotypeScore=26.6594;IndelType=D;MQ=61.34;MQ0=0;QD=12.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308666    GT:AD:DP:GQ:PL    1/1:3,5:8:17.91:139,18,0
12    40034699    rs11836770    G    A    1285.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9993;MQ=59.34;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324616    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1318,99,0
12    40037727    rs10735878    A    G    3496.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324616    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3497,268,0
12    40040059    .    G    GA    183.21    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=1;HaplotypeScore=9.0755;IndelType=I;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324616    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
12    40040331    rs11172990    C    T    2256.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.62;MQ0=0;MQRankSum=1.674;QD=37.61;ReadPosRankSum=-1.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324616    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2290,141,0
12    40040525    rs7971290    G    A    172.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324616    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:205,15,0
12    40044027    .    A    AT    1156.39    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.295;DP=73;FS=1.256;HRun=10;HaplotypeScore=189.977;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=1.499;QD=15.84;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324616    GT:AD:DP:GQ:PL    0/1:30,42:73:99:1195,0,299
12    40077028    rs10047563    A    G    385.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324616    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:419,30,0
12    40421985    rs2128275    A    C    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.81;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280871    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:69,0,71
12    40619082    rs2256408    G    A    370.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.05;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=R50H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40618876_40619084;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:404,30,0
12    40619301    rs2723273    G    A    435.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:468,36,0
12    40626230    rs1352879    T    C    714.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:748,57,0
12    40626285    rs1352878    C    T    282.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
12    40631791    rs10878245    T    C    1258.75    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.749;DB;DP=86;Dels=0.0;FS=2.823;HRun=0;HaplotypeScore=1.8665;MQ=59.51;MQ0=0;MQRankSum=0.039;QD=14.64;ReadPosRankSum=1.043;SNPEFF_AMINO_ACID_CHANGE=L153;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40631771_40631905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:46,40:86:99:1289,0,1442
12    40634158    rs6581622    T    C    71.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.28;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:101,0,67
12    40643468    rs732374    C    T    72.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.09;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,104
12    40645257    rs7955902    C    A    367.96    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.822;DB;DP=25;Dels=0.0;FS=3.862;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=14.72;ReadPosRankSum=-1.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:12,13:25:99:398,0,430
12    40657537    rs10784461    A    G    342.03    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.548;DB;DP=27;Dels=0.0;FS=4.869;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=1.092;QD=12.67;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:14,13:27:99:372,0,493
12    40657771    rs10784462    C    G    276.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=4.133;DB;DP=25;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.139;QD=11.06;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:15,10:25:99:306,0,435
12    40678063    rs145347987    AT    A    60.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=14;HaplotypeScore=17.5478;IndelType=D;MQ=61.78;MQ0=0;QD=10.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416796    GT:AD:DP:GQ:PL    1/1:1,5:6:14.87:103,15,0
12    40681057    rs4473003    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416796    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    40681142    rs71653643    C    CT    261.70    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=46.3814;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.36;ReadPosRankSum=-1.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416796    GT:AD:DP:GQ:PL    0/1:8,8:16:99:301,0,215
12    40689588    rs11175922    C    T    36.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.1837;MQ=56.04;MQ0=0;MQRankSum=-0.358;QD=6.01;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:3,3:6:66.03:66,0,106
12    40702164    rs11564149    C    T    31.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=4.45;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343742    GT:AD:DP:GQ:PL    0/1:4,2:7:61.16:61,0,145
12    40702846    rs7305344    A    T    499.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.04;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=20.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343742    GT:AD:DP:GQ:PL    1/1:0,23:23:54.09:532,54,0
12    40703087    rs10650388    C    CGT    573.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=41.0617;IndelType=I;MQ=61.34;MQ0=0;QD=35.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343742    GT:AD:DP:GQ:PL    1/1:3,12:16:39.13:615,39,0
12    40704557    rs41286474    T    C    295.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.639;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.89;QD=16.44;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:6,12:18:99:326,0,204
12    40708845    rs7973058    A    T    31.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:62,6,0
12    40708892    rs1427267    T    C    449.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:482,36,0
12    40708922    rs1427266    C    T    248.08    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.692;QD=11.28;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:12,10:22:99:278,0,420
12    40709185    rs721713    A    G    459.17    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.029;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.908;QD=19.13;ReadPosRankSum=-2.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:10,14:24:99:489,0,341
12    40709318    rs721712    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
12    40709328    rs721711    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    40713759    rs1896252    T    C    928.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.744;DB;DP=55;Dels=0.0;FS=13.246;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.194;QD=16.89;ReadPosRankSum=2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:22,33:55:99:959,0,714
12    40713834    rs1427263    C    A    3151.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=36.23;SNPEFF_AMINO_ACID_CHANGE=G1624;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40713790_40713977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3185,232,0
12    40713873    rs11176013    A    G    948.11    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DB;DP=95;Dels=0.0;FS=6.898;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.468;QD=9.98;ReadPosRankSum=0.875;SNPEFF_AMINO_ACID_CHANGE=K1637;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40713790_40713977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:55,40:95:99:978,0,1647
12    40713901    rs11564148    T    A    1185.53    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=0.081;DB;DP=88;Dels=0.0;FS=0.81;HRun=0;HaplotypeScore=2.3984;MQ=59.48;MQ0=0;MQRankSum=1.216;QD=13.47;ReadPosRankSum=-1.105;SNPEFF_AMINO_ACID_CHANGE=S1647T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40713790_40713977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:49,39:88:99:1216,0,1362
12    40713951    .    A    G    1248.48    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=0.314;DP=89;Dels=0.0;FS=1.807;HRun=2;HaplotypeScore=0.9578;MQ=59.48;MQ0=0;MQRankSum=0.215;QD=14.03;ReadPosRankSum=0.888;SNPEFF_AMINO_ACID_CHANGE=G1663;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40713790_40713977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:39,49:89:99:1278,0,1184
12    40714618    rs10748034    C    T    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.68;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481256    GT:AD:DP:GQ:PL    0/1:3,2:5:68.41:68,0,111
12    40714785    rs10878368    A    T    631.18    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.36;DB;DP=53;Dels=0.0;FS=1.335;HRun=0;HaplotypeScore=2.6642;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=11.91;ReadPosRankSum=1.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481256    GT:AD:DP:GQ:PL    0/1:30,23:53:99:661,0,924
12    40715013    rs7307276    T    A    431.79    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.017;DB;DP=35;Dels=0.0;FS=3.581;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.446;QD=12.34;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481256    GT:AD:DP:GQ:PL    0/1:18,17:35:99:462,0,571
12    40716015    rs7137665    C    T    1268.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.2623;MQ=57.55;MQ0=0;QD=27.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481256    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1301,105,0
12    40716260    rs10878371    T    C    696.39    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.61;DB;DP=54;Dels=0.0;FS=1.229;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=-0.33;QD=12.9;ReadPosRankSum=0.43;SNPEFF_AMINO_ACID_CHANGE=G1819;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40716121_40716312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:24,29:54:99:726,0,723
12    40729007    rs2404834    C    T    137.88    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=10.61;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:8,5:13:99:168,0,274
12    40740828    rs11289057    AT    A    243.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=56.5441;IndelType=D;MQ=58.88;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:1,10:11:30.04:286,30,0
12    40742073    rs1365766    C    T    129.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
12    40742254    rs10878405    G    A    477.42    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.273;DB;DP=33;Dels=0.0;FS=7.624;HRun=3;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=0.601;QD=14.47;ReadPosRankSum=-0.419;SNPEFF_AMINO_ACID_CHANGE=E2108;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40742211_40742311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:14,19:33:99:507,0,428
12    40745181    rs7307310    T    C    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    40747929    rs7308626    C    T    129.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
12    40748395    rs890575    G    A    236.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:269,21,0
12    40753044    rs111612315    C    CT    380.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.273;DB;DP=20;FS=6.99;HRun=10;HaplotypeScore=54.4317;IndelType=I;MQ=57.88;MQ0=0;MQRankSum=-0.347;QD=19.03;ReadPosRankSum=1.504;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:5,15:20:20.58:423,21,0
12    40753303    rs3789330    A    G    691.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=31.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,21:22:51.17:724,51,0
12    40757114    rs10626458    A    ACATG    1213.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=80.0792;IndelType=I;MQ=46.8;MQ0=0;QD=67.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:6,11:18:48.16:1256,48,0
12    40757186    rs66538238    AT    A    946.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=9;HaplotypeScore=139.58;IndelType=D;MQ=55.5;MQ0=0;QD=23.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:4,36:40:99:989,108,0
12    40757330    rs33962975    A    G    367.74    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=3.418;DB;DP=38;Dels=0.0;FS=1.692;HRun=2;HaplotypeScore=0.5784;MQ=57.4;MQ0=0;MQRankSum=1.902;QD=9.68;ReadPosRankSum=1.16;SNPEFF_AMINO_ACID_CHANGE=G2385;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40757204_40757356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    0/1:23,15:38:99:398,0,715
12    40758652    rs3761863    T    C    637.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=M2397T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40758644_40758852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:670,51,0
12    40761007    rs3789328    A    G    401.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:435,33,0
12    40761358    rs4768238    A    G    466.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298910    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:500,36,0
12    40786987    rs1427259    A    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    40787385    rs7968721    C    A    266.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:299,24,0
12    40805830    rs17444709    T    C    485.06    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.604;DB;DP=32;Dels=0.0;FS=8.162;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.302;QD=15.16;ReadPosRankSum=-1.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:15,17:32:99:515,0,498
12    40805948    rs10878538    G    C    357.51    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=31;Dels=0.0;FS=3.333;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.81;QD=11.53;ReadPosRankSum=-1.403;SNPEFF_AMINO_ACID_CHANGE=D74H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40805835_40805984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:16,15:31:99:388,0,545
12    40812123    rs10878551    C    T    53.75    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=5.97;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:6,3:9:83.74:84,0,196
12    40815548    rs6581732    T    A    1074.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    1/1:0,28:28:84.26:1108,84,0
12    40820208    rs11176575    G    A    829.93    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=2.597;DB;DP=83;Dels=0.0;FS=2.402;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-1.175;QD=9.88;ReadPosRankSum=-1.985;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:50,33:83:99:860,0,1520
12    40820445    rs17467235    AC    A    1199.64    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=4.455;DB;DP=76;FS=4.838;HRun=1;HaplotypeScore=204.8917;IndelType=D;MQ=60.12;MQ0=0;MQRankSum=-1.407;QD=15.78;ReadPosRankSum=1.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471230    GT:AD:DP:GQ:PL    0/1:40,36:76:99:1239,0,1676
12    40821176    rs7955308    G    A    1724.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=42.23;MQ0=0;QD=26.52;SNPEFF_AMINO_ACID_CHANGE=G362E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40821176_40821298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1757,138,0
12    40821867    rs7958987    G    A    1417.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.397;DB;DP=104;Dels=0.0;FS=8.155;HRun=2;HaplotypeScore=0.5784;MQ=59.56;MQ0=0;MQRankSum=-0.689;QD=13.63;ReadPosRankSum=0.35;SNPEFF_AMINO_ACID_CHANGE=V435I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40821772_40821895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:52,52:104:99:1448,0,1516
12    40822012    rs7960062    C    T    168.82    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=15.35;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471230    GT:AD:DP:GQ:PL    0/1:5,6:11:99:199,0,176
12    40823354    rs11564245    G    C    915.61    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.662;DB;DP=71;Dels=0.0;FS=0.917;HRun=0;HaplotypeScore=0.6651;MQ=59.68;MQ0=0;MQRankSum=-0.887;QD=12.9;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=D448H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40823344_40823479;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:39,32:71:99:946,0,1314
12    40826514    rs10506162    T    C    1660.86    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=123;Dels=0.0;FS=2.378;HRun=2;HaplotypeScore=3.7351;MQ=59.32;MQ0=0;MQRankSum=0.636;QD=13.5;ReadPosRankSum=-0.469;SNPEFF_AMINO_ACID_CHANGE=P577;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40826429_40826566;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:65,58:123:99:1691,0,1801
12    40827479    rs2162470    T    C    321.34    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.868;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=14.61;ReadPosRankSum=1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:12,10:22:99:351,0,361
12    40829785    rs7139097    T    C    97.91    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=-0.731;QD=19.58;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:1,4:5:26.72:128,0,27
12    40830599    rs10543634    CGTGTGTGT    C    1428.69    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.243;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=481.1977;IndelType=D;MQ=52.37;MQ0=0;MQRankSum=-3.037;QD=25.51;ReadPosRankSum=1.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:21,23:56:99:1468,0,814
12    40831720    rs10784616    C    G    61.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=15.43;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:92,0,29
12    40831845    rs11564166    A    G    627.81    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.213;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.161;QD=16.52;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:18,20:38:99:658,0,623
12    40832126    rs10878584    C    T    1622.85    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=3.701;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.5202;MQ=59.49;MQ0=0;MQRankSum=0.206;QD=12.78;ReadPosRankSum=-0.3;SNPEFF_AMINO_ACID_CHANGE=N784;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40831930_40832176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:71,56:127:99:1653,0,2123
12    40832161    rs11176635    T    C    1609.49    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=130;Dels=0.0;FS=1.461;HRun=0;HaplotypeScore=3.7562;MQ=59.5;MQ0=0;MQRankSum=0.296;QD=12.38;ReadPosRankSum=0.017;SNPEFF_AMINO_ACID_CHANGE=I796T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40831930_40832176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:73,57:130:99:1639,0,2320
12    40834219    rs10878591    T    A    32.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.736;QD=8.25;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:63,0,33
12    40834376    rs10878592    C    G    689.39    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.04;DB;DP=57;Dels=0.0;FS=3.063;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.057;QD=12.09;ReadPosRankSum=1.285;SNPEFF_AMINO_ACID_CHANGE=C801W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40834376_40834428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:33,24:57:99:719,0,987
12    40834918    rs4768261    C    T    1920.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.649;DB;DP=142;Dels=0.0;FS=2.132;HRun=2;HaplotypeScore=1.9311;MQ=59.87;MQ0=0;MQRankSum=0.427;QD=13.53;ReadPosRankSum=-0.08;SNPEFF_AMINO_ACID_CHANGE=S871F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40834863_40835014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:71,71:142:99:1951,0,2125
12    40834955    rs10784618    C    A    2217.86    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.039;DB;DP=146;Dels=0.0;FS=3.12;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.03;QD=15.19;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=C883*;SNPEFF_CODON_CHANGE=tgC/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_12_40834863_40835014;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:67,79:146:99:2248,0,2041
12    40835026    rs11564142    C    T    1227.31    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=4.601;DB;DP=85;Dels=0.0;FS=3.709;HRun=0;HaplotypeScore=1.8455;MQ=58.91;MQ0=0;MQRankSum=0.312;QD=14.44;ReadPosRankSum=2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:43,42:85:99:1257,0,1152
12    40835596    rs4768263    T    G    320.57    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.02;ReadPosRankSum=1.904;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:21,11:32:99:351,0,756
12    40835734    rs7966110    C    G    1163.88    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.154;DB;DP=69;Dels=0.0;FS=4.902;HRun=0;HaplotypeScore=0.9973;MQ=59.73;MQ0=0;MQRankSum=-0.132;QD=16.87;ReadPosRankSum=0.561;SNPEFF_AMINO_ACID_CHANGE=I923M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40835674_40835812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1194,0,983
12    40837413    rs11176665    G    A    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    40837898    rs11564109    G    A    1427.08    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.335;DB;DP=86;Dels=0.0;FS=7.338;HRun=0;HaplotypeScore=1.4679;MQ=59.73;MQ0=0;MQRankSum=-1.193;QD=16.59;ReadPosRankSum=-1.055;SNPEFF_AMINO_ACID_CHANGE=C1056Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40837879_40838118;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:41,45:86:99:1457,0,1171
12    40838146    rs10784620    A    T    1213.60    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.284;DB;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=59.21;MQ0=0;MQRankSum=0.987;QD=13.79;ReadPosRankSum=1.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:47,41:88:99:1244,0,1441
12    40838216    rs10784621    T    C    995.82    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.598;DB;DP=79;Dels=0.0;FS=3.081;HRun=0;HaplotypeScore=0.9332;MQ=59.42;MQ0=0;MQRankSum=0.65;QD=12.61;ReadPosRankSum=-0.099;SNPEFF_AMINO_ACID_CHANGE=V1138A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40838191_40838347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:41,38:79:99:1026,0,1254
12    40839467    rs7972395    A    G    925.27    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=54;Dels=0.0;FS=18.155;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.33;QD=17.13;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:25,29:54:99:955,0,723
12    40839521    rs1346307    T    C    449.53    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=55.26;MQ0=0;MQRankSum=1.133;QD=13.62;ReadPosRankSum=0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:18,15:33:99:480,0,539
12    40839601    rs148025339    TCTCTAAACATAAG    T    456.99    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=147.4667;IndelType=D;MQ=47.06;MQ0=0;MQRankSum=-1.453;QD=35.15;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:8,5:13:99:496,0,966
12    40840325    rs10878597    T    C    1998.75    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.981;DB;DP=162;Dels=0.0;FS=0.588;HRun=1;HaplotypeScore=5.1741;MQ=59.86;MQ0=0;MQRankSum=1.91;QD=12.34;ReadPosRankSum=0.8;SNPEFF_AMINO_ACID_CHANGE=L1236;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40840290_40840431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:89,73:162:99:2029,0,2725
12    40840435    rs7315186    T    C    1849.31    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=3.261;DB;DP=111;Dels=0.0;FS=2.918;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=0.498;QD=16.66;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:52,59:111:99:1879,0,1664
12    40840626    rs7295553    G    T    65.81    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.45;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:96,0,31
12    40841781    rs1820547    A    G    169.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
12    40841832    rs17589334    G    A    118.54    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=13.17;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:4,5:9:99:149,0,117
12    40841851    rs17529964    A    G    98.33    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=7.02;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:9,5:14:99:128,0,327
12    40841938    rs11176682    G    T    492.11    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.029;QD=12.95;ReadPosRankSum=-0.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:17,21:38:99:522,0,568
12    40844667    rs10784623    A    C    31.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.98;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:2,2:4:61.92:62,0,70
12    40852398    rs1035811    T    C    275.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:308,24,0
12    40857214    rs10878623    T    C    159.17    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.68;MQ0=0;MQRankSum=-0.362;QD=8.84;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:11,7:18:99:189,0,348
12    40857943    rs2933353    A    C    258.90    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.764;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9989;MQ=58.61;MQ0=0;MQRankSum=1.239;QD=9.59;ReadPosRankSum=1.344;SNPEFF_AMINO_ACID_CHANGE=E1407A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40857922_40858005;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:16,11:27:99:289,0,410
12    40858122    rs12228358    G    T    100.01    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=9.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:7,4:11:99:130,0,248
12    40859036    rs2131202    C    T    390.32    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=4.154;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.415;QD=11.83;ReadPosRankSum=0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:18,15:33:99:420,0,462
12    40859588    rs2131204    A    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
12    40868767    rs1444222    A    G    316.35    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=29;Dels=0.0;FS=3.646;HRun=0;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;MQRankSum=-1.277;QD=10.91;ReadPosRankSum=0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425730    GT:AD:DP:GQ:PL    0/1:16,13:29:99:346,0,567
12    40894745    rs111256342    A    ACTGAGAATAC    2742.33    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.27;DB;DP=45;FS=11.932;HRun=0;HaplotypeScore=323.6255;IndelType=I;MQ=49.22;MQ0=0;MQRankSum=-5.639;QD=60.94;ReadPosRankSum=-0.332;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:35,8:45:99:2781,0,2312
12    40894964    rs719228    G    T    241.71    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.866;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=56.92;MQ0=0;MQRankSum=-0.157;QD=10.51;ReadPosRankSum=-1.039;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:14,9:23:99:272,0,522
12    40895026    rs719227    C    T    54.97    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.761;DB;DP=13;Dels=0.0;FS=2.92;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=4.23;ReadPosRankSum=-0.254;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:10,3:13:84.96:85,0,332
12    40903100    rs1838351    C    T    374.12    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.698;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.03;MQ0=0;MQRankSum=0.651;QD=15.59;ReadPosRankSum=-0.031;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:10,14:24:99:404,0,261
12    40904082    rs75082296    C    A    160.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.14;QD=8.92;ReadPosRankSum=-1.077;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:12,6:18:99:190,0,448
12    40905153    rs11176961    C    T    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
12    40905210    rs2638886    G    A    355.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:388,30,0
12    40905383    rs1492328    G    A    812.91    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.376;DB;DP=64;Dels=0.0;FS=0.966;HRun=0;HaplotypeScore=0.5784;MQ=59.02;MQ0=0;MQRankSum=0.833;QD=12.7;ReadPosRankSum=-0.148;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:33,31:64:99:843,0,997
12    40910157    rs59005564    A    C    112.70    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=58.55;MQ0=0;MQRankSum=-0.68;QD=7.04;ReadPosRankSum=1.359;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:11,5:16:99:143,0,374
12    40910545    rs1122863    G    A    167.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.05;MQ0=0;MQRankSum=0.583;QD=13.98;ReadPosRankSum=0.259;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:6,6:12:99:198,0,173
12    40911882    rs7300780    G    A    345.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.015;DB;DP=39;Dels=0.0;FS=7.825;HRun=0;HaplotypeScore=0.9983;MQ=58.92;MQ0=0;MQRankSum=1.846;QD=8.86;ReadPosRankSum=-0.523;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:26,13:39:99:375,0,840
12    40912034    rs56036709    T    C    174.31    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=5.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=17.43;ReadPosRankSum=0.296;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:3,7:10:95.91:204,0,96
12    40912162    rs17128391    T    C    258.29    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.479;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.555;QD=19.87;ReadPosRankSum=0.925;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:4,9:13:83.92:288,0,84
12    40912684    rs73116206    A    T    2089.59    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.858;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.5;MQ0=0;MQRankSum=-2.973;QD=15.03;ReadPosRankSum=-1.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:62,76:139:99:2120,0,1865
12    40912953    rs112863400    G    GA    282.74    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.343;DB;DP=40;FS=0.0;HRun=10;HaplotypeScore=92.5449;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=-0.46;QD=7.07;ReadPosRankSum=-0.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:26,14:40:99:322,0,350
12    40913563    rs144646215    TTA    T    157.27    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=2.663;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=50.5317;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=9.25;ReadPosRankSum=-0.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:11,6:17:99:196,0,529
12    40913928    rs17599001    T    C    66.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.36;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:97,0,67
12    40914127    rs17599042    A    G    105.85    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.304;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.261;QD=4.6;ReadPosRankSum=1.379;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:18,5:23:99:136,0,648
12    40915193    rs67183094    G    GT    90.96    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=11;FS=0.0;HRun=10;HaplotypeScore=33.3412;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=8.27;ReadPosRankSum=0.676;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:6,5:11:93.16:130,0,93
12    40915474    rs58079549    CA    C    679.01    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=5.869;DB;DP=49;FS=5.078;HRun=1;HaplotypeScore=207.1216;IndelType=D;MQ=60.19;MQ0=0;MQRankSum=0.636;QD=13.86;ReadPosRankSum=-1.687;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:28,21:49:99:718,0,1184
12    40915480    rs56952712    G    A    520.89    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.16;DB;DP=47;Dels=0.0;FS=3.23;HRun=0;HaplotypeScore=0.0;MQ=59.97;MQ0=0;MQRankSum=0.353;QD=11.08;ReadPosRankSum=-1.872;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:26,21:47:99:551,0,839
12    40916163    rs56211973    T    C    304    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.393;QD=30.4;ReadPosRankSum=-1.741;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:1,9:10:11.66:334,0,12
12    40916281    rs55642775    A    G    866.22    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.263;DB;DP=62;Dels=0.0;FS=23.922;HRun=1;HaplotypeScore=0.7887;MQ=52.48;MQ0=0;MQRankSum=0.059;QD=13.97;ReadPosRankSum=0.991;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:29,33:62:99:896,0,909
12    40917312    rs2920820    C    T    1231.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.121;DB;DP=90;Dels=0.0;FS=4.159;HRun=2;HaplotypeScore=2.444;MQ=59.54;MQ0=0;MQRankSum=1.306;QD=13.68;ReadPosRankSum=0.029;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:45,45:90:99:1261,0,1460
12    40917416    rs11829565    T    C    778.87    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.297;DB;DP=83;Dels=0.0;FS=4.418;HRun=0;HaplotypeScore=0.0;MQ=58.41;MQ0=0;MQRankSum=1.266;QD=9.38;ReadPosRankSum=1.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:52,31:83:99:809,0,1590
12    40917532    rs79341017    TAA    T    120.64    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=2.84;DB;DP=27;FS=0.0;HRun=10;HaplotypeScore=91.5031;IndelType=D;MQ=58.68;MQ0=0;MQRankSum=0.702;QD=4.47;ReadPosRankSum=-1.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:20,7:27:99:160,0,693
12    40919119    rs56226314    T    C    342.65    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=0.08;DB;DP=37;Dels=0.0;FS=8.457;HRun=0;HaplotypeScore=0.734;MQ=58.35;MQ0=0;MQRankSum=0.429;QD=9.26;ReadPosRankSum=0.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:24,13:37:99:373,0,824
12    40920733    rs68148792    T    C    69.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.26;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:1,3:4:29.73:99,0,30
12    40920872    rs35635655    CT    C    367.90    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=1.601;DB;DP=59;FS=13.72;HRun=15;HaplotypeScore=305.3324;IndelType=D;MQ=55.13;MQ0=0;MQRankSum=-1.144;QD=6.24;ReadPosRankSum=0.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:26,29:59:99:407,0,265
12    40921902    rs4768287    C    T    1828.95    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.583;DB;DP=135;Dels=0.0;FS=3.22;HRun=2;HaplotypeScore=4.0322;MQ=59.83;MQ0=0;MQRankSum=0.011;QD=13.55;ReadPosRankSum=-1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:65,70:135:99:1859,0,2010
12    40922091    rs4768288    A    G    872.66    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=64;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.9923;MQ=60.0;MQ0=0;MQRankSum=0.712;QD=13.64;ReadPosRankSum=0.846;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:33,31:64:99:903,0,1045
12    40922104    rs1444220    A    C    723.74    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.042;DB;DP=59;Dels=0.0;FS=1.037;HRun=1;HaplotypeScore=2.9288;MQ=60.0;MQ0=0;MQRankSum=0.494;QD=12.27;ReadPosRankSum=0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    0/1:32,27:59:99:754,0,969
12    40922280    rs1492331    C    T    151.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398702    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:185,15,0
12    40923073    rs73119944    G    T    788.39    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.758;DB;DP=56;Dels=0.0;FS=7.772;HRun=3;HaplotypeScore=1.7883;MQ=59.59;MQ0=0;MQRankSum=0.016;QD=14.08;ReadPosRankSum=0.758;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:31,25:56:99:818,0,980
12    40924034    rs73119950    G    A    167.39    HaplotypeScoreFilter13    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.479;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.6297;MQ=53.03;MQ0=0;MQRankSum=-1.564;QD=7.97;ReadPosRankSum=-1.986;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:13,8:21:99:197,0,351
12    40924179    rs73106607    C    G    385.51    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.181;DB;DP=31;Dels=0.0;FS=3.18;HRun=0;HaplotypeScore=0.9159;MQ=53.74;MQ0=0;MQRankSum=1.021;QD=12.44;ReadPosRankSum=0.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:18,13:31:99:416,0,541
12    40924191    rs12813020    T    A    413.18    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=27;Dels=0.0;FS=3.653;HRun=1;HaplotypeScore=0.0;MQ=52.75;MQ0=0;MQRankSum=-0.073;QD=15.3;ReadPosRankSum=1.879;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:12,15:27:99:443,0,385
12    40924470    rs2588403    T    C    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.34;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,105
12    40925108    rs4768289    A    C    214.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.265;QD=11.9;ReadPosRankSum=0.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:9,9:18:99:244,0,317
12    40925454    rs73106618    G    A    104.67    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=8.751;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=10.47;ReadPosRankSum=1.036;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,208
12    40925479    rs73106620    C    T    97.03    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=7.404;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=8.82;ReadPosRankSum=-0.825;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:6,5:11:99:127,0,215
12    40925545    rs73106623    C    T    241.68    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=20;Dels=0.0;FS=3.916;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=12.08;ReadPosRankSum=-0.912;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:9,11:20:99:272,0,274
12    40925691    rs17128416    C    T    200.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=14;Dels=0.0;FS=2.276;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.78;QD=14.35;ReadPosRankSum=1.276;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:7,7:14:99:231,0,240
12    40925908    rs7139187    A    C    2299.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=58.93;MQ0=0;QD=35.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2333,172,0
12    40926203    rs11835376    T    A    175.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.838;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=10.95;ReadPosRankSum=0.788;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:8,8:16:99:205,0,288
12    40926260    rs17599204    C    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:2,2:4:61.89:70,0,62
12    40926454    rs10506166    T    C    372.78    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.923;DB;DP=24;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=15.53;ReadPosRankSum=0.031;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454784    GT:AD:DP:GQ:PL    0/1:11,12:24:99:403,0,366
12    40927890    rs7977973    T    G    244.01    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.776;QD=12.84;ReadPosRankSum=-0.857;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423284    GT:AD:DP:GQ:PL    0/1:10,9:19:99:274,0,317
12    40929198    rs182555366    A    G    107.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=56.62;MQ0=0;MQRankSum=-1.754;QD=15.35;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474954    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,101
12    40930284    rs1873674    C    G    688.79    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DB;DP=65;Dels=0.0;FS=0.956;HRun=0;HaplotypeScore=1.7319;MQ=59.65;MQ0=0;MQRankSum=0.712;QD=10.6;ReadPosRankSum=0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474954    GT:AD:DP:GQ:PL    0/1:36,28:65:99:719,0,1122
12    40930709    rs7971316    G    C    2251.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=35.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474954    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2284,163,0
12    40930999    rs10506167    G    A    115.98    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=8;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.754;QD=14.5;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474954    GT:AD:DP:GQ:PL    0/1:3,5:8:99:146,0,101
12    40931655    rs76684015    G    A    1375.50    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.669;DB;DP=110;Dels=0.0;FS=3.778;HRun=1;HaplotypeScore=2.5301;MQ=59.79;MQ0=0;MQRankSum=-1.289;QD=12.5;ReadPosRankSum=-0.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423284    GT:AD:DP:GQ:PL    0/1:58,51:110:99:1405,0,1697
12    40932661    rs11177108    G    A    458.68    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.374;DB;DP=41;Dels=0.0;FS=3.022;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.384;QD=11.19;ReadPosRankSum=-0.013;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423284    GT:AD:DP:GQ:PL    0/1:24,17:41:99:489,0,733
12    40935231    rs11177133    C    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
12    40935517    rs56083241    G    A    765.42    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.686;DB;DP=72;Dels=0.0;FS=3.388;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-1.276;QD=10.63;ReadPosRankSum=-1.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423284    GT:AD:DP:GQ:PL    0/1:44,28:72:99:795,0,1444
12    40935632    rs11177134    T    C    1314.73    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.514;DB;DP=105;Dels=0.0;FS=8.131;HRun=0;HaplotypeScore=2.6807;MQ=59.38;MQ0=0;MQRankSum=-0.274;QD=12.52;ReadPosRankSum=-0.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423284    GT:AD:DP:GQ:PL    0/1:52,53:105:99:1345,0,1666
12    40935796    rs10506168    A    C    196.01    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.702;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.05;QD=9.33;ReadPosRankSum=1.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423284    GT:AD:DP:GQ:PL    0/1:13,8:21:99:226,0,433
12    40936512    rs17599666    C    A    905.71    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.815;DB;DP=59;Dels=0.0;FS=3.679;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.607;QD=15.35;ReadPosRankSum=-0.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:30,29:59:99:936,0,979
12    40938751    rs7304329    A    G    232.79    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=24;Dels=0.0;FS=1.674;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=9.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:13,11:24:99:263,0,463
12    40938944    rs7133943    C    T    65.19    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=5.93;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:8,3:11:95.18:95,0,260
12    40938975    rs7133098    G    C    89.60    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=13;Dels=0.0;FS=2.757;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.157;QD=6.89;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:9,4:13:99:120,0,325
12    40939066    rs139186904    CA    C    305.11    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=3.182;DB;DP=25;FS=0.0;HRun=6;HaplotypeScore=58.8274;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=12.2;ReadPosRankSum=-1.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:12,13:25:99:344,0,394
12    40940392    rs7959536    C    T    234.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=22;Dels=0.0;FS=4.32;HRun=5;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=10.68;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:11,11:22:99:265,0,334
12    40940487    rs12231675    T    G    127.21    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=58.05;MQ0=0;MQRankSum=-0.529;QD=10.6;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:5,7:12:99:157,0,163
12    40942311    rs11177162    C    A    137.58    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=53.03;MQ0=0;MQRankSum=-0.198;QD=19.65;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492952    GT:AD:DP:GQ:PL    0/1:2,5:7:59.74:168,0,60
12    40942463    rs35702138    GT    G    89.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=15;HaplotypeScore=96.9956;IndelType=D;MQ=54.65;MQ0=0;QD=4.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492952    GT:AD:DP:GQ:PL    1/1:11,5:18:26.84:131,27,0
12    40942491    .    A    ACT    202.97    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DP=15;FS=0.0;HRun=0;HaplotypeScore=84.5195;IndelType=I;MQ=53.52;MQ0=0;MQRankSum=-1.991;QD=13.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492952    GT:AD:DP:GQ:PL    0/1:10,5:15:99:242,0,313
12    40943329    rs1463738    G    A    203.80    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.717;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.906;QD=11.32;ReadPosRankSum=0.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492952    GT:AD:DP:GQ:PL    0/1:11,7:18:99:234,0,340
12    40943970    rs1492316    G    A    175.34    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=10.96;ReadPosRankSum=0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492952    GT:AD:DP:GQ:PL    0/1:10,6:16:99:205,0,299
12    40948801    rs73271812    G    A    94.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=11.77;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:4,4:8:99:124,0,144
12    40950801    rs73115400    G    T    60.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6609;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=6.07;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:6,4:10:90.72:91,0,217
12    40950883    rs7487017    A    G    384.31    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=3.343;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.781;QD=12.4;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:13,18:31:99:414,0,448
12    40951596    rs3751167    A    G    846.07    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.342;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.74;MQ0=0;MQRankSum=0.903;QD=11.59;ReadPosRankSum=1.945;SNPEFF_AMINO_ACID_CHANGE=P268;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40951580_40951673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:40,33:73:99:876,0,1248
12    40951605    rs3751168    G    A    1005.86    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.627;DB;DP=80;Dels=0.0;FS=2.139;HRun=1;HaplotypeScore=0.9983;MQ=59.77;MQ0=0;MQRankSum=0.708;QD=12.57;ReadPosRankSum=1.309;SNPEFF_AMINO_ACID_CHANGE=L271;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_40951580_40951673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:45,35:80:99:1036,0,1400
12    40951756    rs3829294    G    A    519.57    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DB;DP=49;Dels=0.0;FS=6.169;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.213;QD=10.6;ReadPosRankSum=0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:31,18:49:99:550,0,1123
12    40951845    rs3751169    G    A    939.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=59.66;MQ0=0;MQRankSum=1.097;QD=13.82;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:34,34:68:99:970,0,1061
12    40951950    rs3751172    G    A    1276.99    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.559;DB;DP=93;Dels=0.0;FS=1.894;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.388;QD=13.73;ReadPosRankSum=-0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:47,46:93:99:1307,0,1457
12    40952934    rs1352938    A    G    525.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:559,42,0
12    40954482    rs3751175    G    A    137.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.5;ReadPosRankSum=1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    0/1:6,5:11:99:168,0,217
12    40959174    rs1463739    A    G    198.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=16.58;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484665    GT:AD:DP:GQ:PL    0/1:4,8:12:99:229,0,132
12    40961265    rs11177260    A    G    128.95    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.688;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.891;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=7.59;ReadPosRankSum=0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484665    GT:AD:DP:GQ:PL    0/1:12,5:17:99:159,0,415
12    40961615    rs58355196    G    A    385.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484665    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:419,33,0
12    40963310    rs7978657    T    C    388.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:421,33,0
12    40964206    rs7979493    A    G    769.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538912    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:802,66,0
12    41302374    rs35684552    A    C    302.19    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.859;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=17.78;ReadPosRankSum=-1.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:6,11:17:99:332,0,204
12    41323486    rs71449788    C    T    76.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:2,3:5:67.27:107,0,67
12    41331612    rs1442193    T    C    206.60    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=17.22;ReadPosRankSum=-1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:5,7:12:99:237,0,156
12    41333045    rs35617364    C    T    204.03    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.4;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:3,7:10:72.05:234,0,72
12    41333052    rs34601389    G    A    192.31    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=17.48;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:3,8:11:96.69:222,0,97
12    41337435    rs1056019    C    T    720.32    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=52;Dels=0.0;FS=2.388;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.238;QD=13.85;ReadPosRankSum=0.165;SNPEFF_AMINO_ACID_CHANGE=N461;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_41337399_41337526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348761    GT:AD:DP:GQ:PL    0/1:27,25:52:99:750,0,845
12    41374862    rs33965313    A    G    568.20    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=1.552;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.346;QD=9.16;ReadPosRankSum=1.508;SNPEFF_AMINO_ACID_CHANGE=A641;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_41374711_41374869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348761    GT:AD:DP:GQ:PL    0/1:40,22:62:99:598,0,1291
12    41386743    rs278912    A    T    145.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=16.22;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:4,5:9:99:176,0,130
12    41387110    rs278911    C    G    214.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.489;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=11.27;ReadPosRankSum=0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:10,8:19:99:244,0,310
12    41463689    rs11179698    T    C    419.38    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.203;DB;DP=31;Dels=0.0;FS=3.452;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=13.53;ReadPosRankSum=0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:17,14:31:99:449,0,615
12    41464003    rs444927    G    A    68.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=9.8;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347616    GT:AD:DP:GQ:PL    0/1:4,3:7:98.60:99,0,144
12    41582590    rs10879830    G    C    91.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.84;SNPEFF_AMINO_ACID_CHANGE=R111;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_41582250_41582905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402685    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
12    41582603    rs10879831    G    C    88.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.05;SNPEFF_AMINO_ACID_CHANGE=G116R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_41582250_41582905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402685    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
12    41588124    rs3847980    A    G    509.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402685    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:543,39,0
12    41946453    rs285585    T    C    2122.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298919    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2155,166,0
12    41946539    rs285584    G    A    857.99    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.084;DB;DP=60;Dels=0.0;FS=1.261;HRun=0;HaplotypeScore=0.9832;MQ=59.23;MQ0=0;MQRankSum=1.524;QD=14.3;ReadPosRankSum=0.857;SNPEFF_AMINO_ACID_CHANGE=G169S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_41946458_41946556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298919    GT:AD:DP:GQ:PL    0/1:31,29:60:99:888,0,958
12    41949370    rs285580    T    G    330.54    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=23.61;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298919    GT:AD:DP:GQ:PL    0/1:4,10:14:99:361,0,125
12    41949688    rs61596958    CA    C    70.47    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.678;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=45.9856;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=0.752;QD=4.4;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298919    GT:AD:DP:GQ:PL    0/1:8,6:16:99:110,0,195
12    42503505    rs55738419    T    A    248.23    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=21;Dels=0.0;FS=9.556;HRun=9;HaplotypeScore=1.9623;MQ=57.77;MQ0=0;MQRankSum=-0.076;QD=11.82;ReadPosRankSum=-1.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GXYLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280876    GT:AD:DP:GQ:PL    0/1:10,11:21:99:278,0,269
12    42707437    rs3761677    C    G    1006.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=37.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552235    GT:AD:DP:GQ:PL    1/1:0,27:27:78.23:1039,78,0
12    42717961    rs3747557    G    T    500.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.9979;MQ=58.78;MQ0=0;QD=26.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551102    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:533,45,0
12    42718013    rs3747558    T    C    288.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCRB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551102    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:321,30,0
12    42729891    rs7296357    T    G    394.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPHLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256678    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:428,33,0
12    42778922    rs1669906    G    A    312.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPHLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256678    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:345,27,0
12    42781178    rs2243465    A    T    743.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPHLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256678    GT:AD:DP:GQ:PL    1/1:0,21:21:57.16:777,57,0
12    42781464    rs185204599    T    A    56.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=4.74;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPHLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552794    GT:AD:DP:GQ:PL    0/1:8,4:12:86.91:87,0,304
12    42787579    rs1376931    A    G    299.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPHLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547696    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
12    42839836    rs1669885    A    C    1439.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.63;SNPEFF_AMINO_ACID_CHANGE=Q270P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_42839793_42840092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPHLN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256678    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1472,114,0
12    42854205    rs3747562    A    G    1185.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.91;MQ0=0;MQRankSum=-1.075;QD=19.76;ReadPosRankSum=0.299;SNPEFF_AMINO_ACID_CHANGE=S634;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_42853052_42854467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345127    GT:AD:DP:GQ:PL    1/1:1,58:59:93.54:1219,94,0
12    42854208    rs3747563    A    G    1325.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.312;QD=21.38;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=F633;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_42853052_42854467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345127    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1359,109,0
12    42858029    rs2600924    C    G    542.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPHLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317560    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:576,45,0
12    42859961    rs12230583    A    G    1425.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7834;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547113    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1458,108,0
12    42862305    rs2708061    G    C    277.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547113    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:311,24,0
12    42863801    rs3213989    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345127    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
12    43072833    rs7299628    A    G    1946.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.66;MQ0=0;QD=32.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-25I15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486977    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1980,150,0
12    43763234    rs1390000    G    T    338.71    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.077;QD=14.73;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389420    GT:AD:DP:GQ:PL    0/1:11,12:23:99:369,0,389
12    43769228    rs10506226    A    C    2935.90    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.535;DB;DP=191;Dels=0.0;FS=4.18;HRun=1;HaplotypeScore=1.9301;MQ=59.32;MQ0=0;MQRankSum=-0.091;QD=15.37;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=T1800;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_43769182_43769315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389420    GT:AD:DP:GQ:PL    0/1:89,102:191:99:2966,0,2712
12    43769276    rs10880473    T    C    2533.47    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=176;Dels=0.0;FS=0.56;HRun=1;HaplotypeScore=5.4614;MQ=59.5;MQ0=0;MQRankSum=0.927;QD=14.39;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=R1784;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_43769182_43769315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389420    GT:AD:DP:GQ:PL    0/1:91,85:176:99:2563,0,2682
12    43769718    rs7972295    A    G    156.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389420    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:190,15,0
12    43770617    rs9804726    G    A    153.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=12.8;ReadPosRankSum=-1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389420    GT:AD:DP:GQ:PL    0/1:6,6:12:99:184,0,217
12    43817445    rs6582463    C    T    835.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    1/1:0,28:28:63.20:868,63,0
12    43819209    rs61925141    C    A    373.80    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.11;MQ0=0;MQRankSum=0.208;QD=14.38;ReadPosRankSum=0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:11,15:26:99:404,0,389
12    43819298    rs10785430    G    A    803.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.618;DB;DP=72;Dels=0.0;FS=3.564;HRun=1;HaplotypeScore=1.9399;MQ=59.68;MQ0=0;MQRankSum=-0.017;QD=11.15;ReadPosRankSum=0.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:40,32:72:99:833,0,1236
12    43821335    rs113553220    T    TA    182.31    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.716;DB;DP=46;FS=0.0;HRun=12;HaplotypeScore=137.1445;IndelType=I;MQ=59.74;MQ0=0;MQRankSum=0.079;QD=3.96;ReadPosRankSum=-0.926;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:34,12:46:99:221,0,456
12    43833296    rs7959623    T    C    1137.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    1/1:0,36:36:96.27:1171,96,0
12    43833981    rs10785431    G    C    271.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.25;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:304,24,0
12    43840370    rs61925148    G    A    385.03    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=3.264;DB;DP=37;Dels=0.0;FS=1.742;HRun=3;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.974;QD=10.41;ReadPosRankSum=0.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:22,15:37:99:415,0,645
12    43846272    rs7307955    C    T    4652.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.65;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    1/1:0,131:132:99:4652,340,0
12    43847941    rs6582464    C    T    203.26    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.098;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=11.96;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:10,7:17:99:233,0,351
12    43860295    rs4988573    A    C    153.87    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.23;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:3,5:8:82.91:184,0,83
12    43883994    rs7295870    G    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    43884330    rs7297170    C    A    66.72    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.34;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:5,3:8:96.71:97,0,180
12    43886199    rs11182110    G    C    158.63    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.791;MQ=57.99;MQ0=0;MQRankSum=-2.126;QD=7.55;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:14,7:21:99:189,0,398
12    43886205    rs55821433    G    C    229.72    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.603;DB;DP=23;Dels=0.04;FS=2.57;HRun=0;HaplotypeScore=2.8298;MQ=58.24;MQ0=0;MQRankSum=0.668;QD=9.57;ReadPosRankSum=-1.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:14,9:23:99:260,0,349
12    43926132    rs7960952    C    T    304.49    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.869;QD=12.18;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:14,11:25:99:334,0,444
12    43945603    rs275602    A    C    519.24    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.911;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=1.4;QD=12.36;ReadPosRankSum=0.856;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389417    GT:AD:DP:GQ:PL    0/1:22,20:42:99:549,0,636
12    44191625    rs12829856    G    A    499.55    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.509;DB;DP=42;Dels=0.0;FS=7.182;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.204;QD=11.89;ReadPosRankSum=1.917;SNPEFF_AMINO_ACID_CHANGE=D165;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_44191511_44191636;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TWF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395510    GT:AD:DP:GQ:PL    0/1:24,18:42:99:530,0,607
12    44192424    rs35482343    T    TA    64.18    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=14;FS=0.0;HRun=15;HaplotypeScore=59.8981;IndelType=I;MQ=58.75;MQ0=0;MQRankSum=-0.684;QD=4.58;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TWF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546506    GT:AD:DP:GQ:PL    0/1:7,6:14:18.88:103,0,19
12    44196350    rs34291769    T    C    434.28    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.458;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.33;MQ0=0;MQRankSum=-0.196;QD=14.98;ReadPosRankSum=-1.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TWF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547961    GT:AD:DP:GQ:PL    0/1:15,14:29:99:464,0,519
12    44338153    rs6582491    T    A    2176.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMEM117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266534    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2210,166,0
12    45004824    rs2305448    G    A    205.18    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.111;QD=10.8;ReadPosRankSum=-1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333837    GT:AD:DP:GQ:PL    0/1:10,9:19:99:235,0,316
12    45108397    rs74497791    A    C    787.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.108;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=20.2;ReadPosRankSum=1.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333837    GT:AD:DP:GQ:PL    0/1:13,26:39:99:818,0,389
12    45108480    rs17574839    T    C    855.08    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.474;DB;DP=54;Dels=0.0;FS=1.099;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.009;QD=15.83;ReadPosRankSum=-0.867;SNPEFF_AMINO_ACID_CHANGE=N346D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_45108433_45108524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395487    GT:AD:DP:GQ:PL    0/1:24,29:54:99:885,0,698
12    45170006    rs4768572    T    C    872.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547172    GT:AD:DP:GQ:PL    1/1:0,31:31:66.22:906,66,0
12    45171342    rs975085    A    C    48.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547172    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    45173856    .    G    A    412.26    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DP=27;Dels=0.0;FS=3.174;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=15.27;ReadPosRankSum=0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333837    GT:AD:DP:GQ:PL    0/1:13,14:27:99:442,0,416
12    45269284    rs7295923    C    T    968.80    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=73;Dels=0.0;FS=2.148;HRun=0;HaplotypeScore=0.9665;MQ=58.73;MQ0=0;MQRankSum=-1.043;QD=13.27;ReadPosRankSum=0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333837    GT:AD:DP:GQ:PL    0/1:39,34:73:99:999,0,1165
12    45269703    rs2272517    A    T    353.50    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.005;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=11.05;ReadPosRankSum=0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NELL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333837    GT:AD:DP:GQ:PL    0/1:18,14:32:99:383,0,602
12    45410075    rs1224442    A    G    792.72    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.756;DB;DP=57;Dels=0.0;FS=3.84;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.711;QD=13.91;ReadPosRankSum=-0.666;SNPEFF_AMINO_ACID_CHANGE=A338;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_45408455_45410401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332700    GT:AD:DP:GQ:PL    0/1:26,30:57:99:823,0,811
12    45417666    rs2731038    T    C    509.51    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.98;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.616;QD=10.19;ReadPosRankSum=-0.172;SNPEFF_AMINO_ACID_CHANGE=M171V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_45417490_45417677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332700    GT:AD:DP:GQ:PL    0/1:28,22:50:99:540,0,970
12    45695735    rs4140756    C    A    587.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320560    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:621,48,0
12    46321514    rs7315731    A    T    2844.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=F342Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_46319925_46323748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCAF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000465950    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2878,214,0
12    46326840    rs75704343    T    C    61.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=10.28;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCAF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369367    GT:AD:DP:GQ:PL    0/1:3,3:6:91.67:92,0,106
12    46633328    rs7959095    G    T    105.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.24;ReadPosRankSum=2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398637    GT:AD:DP:GQ:PL    0/1:4,4:8:99:136,0,133
12    46755112    rs7961994    A    T    36.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547252    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,113
12    46757985    rs3782904    T    C    77.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.95;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547252    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,104
12    46758462    rs61748367    G    A    1148.76    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=3.258;DB;DP=119;Dels=0.0;FS=1.52;HRun=3;HaplotypeScore=1.5592;MQ=59.45;MQ0=0;MQRankSum=1.075;QD=9.65;ReadPosRankSum=0.712;SNPEFF_AMINO_ACID_CHANGE=L224F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_46758427_46758485;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256689    GT:AD:DP:GQ:PL    0/1:69,50:119:99:1179,0,2082
12    46758494    rs2307061    A    G    1420.18    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=101;Dels=0.0;FS=4.451;HRun=4;HaplotypeScore=1.7552;MQ=59.13;MQ0=0;MQRankSum=-0.087;QD=14.06;ReadPosRankSum=1.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256689    GT:AD:DP:GQ:PL    0/1:45,56:101:99:1450,0,1320
12    46759017    rs7968173    T    A    856.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.211;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=15.85;ReadPosRankSum=0.614;SNPEFF_AMINO_ACID_CHANGE=S11;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_46758890_46759090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551374    GT:AD:DP:GQ:PL    0/1:27,27:54:99:886,0,876
12    46759057    rs12307969    G    C    610.53    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.222;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.542;QD=17.96;ReadPosRankSum=-1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256689    GT:AD:DP:GQ:PL    0/1:14,20:34:99:641,0,481
12    46759136    rs7968283    T    C    127.70    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.96;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256689    GT:AD:DP:GQ:PL    0/1:3,5:8:99:158,0,101
12    46760557    rs3832874    C    CTAA    314.89    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=51.18;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=0.705;QD=19.68;ReadPosRankSum=1.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551405    GT:AD:DP:GQ:PL    0/1:10,6:16:99:354,0,438
12    46761127    rs10880959    G    A    2102.05    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.726;DB;DP=129;Dels=0.0;FS=1.891;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-1.625;QD=16.29;ReadPosRankSum=-2.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551405    GT:AD:DP:GQ:PL    0/1:64,65:129:99:2132,0,2045
12    46765228    rs10880961    C    G    333.86    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.579;QD=25.68;ReadPosRankSum=1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256689    GT:AD:DP:GQ:PL    0/1:2,11:13:3.20:363,0,3
12    47159123    rs4768756    A    G    74.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266579    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
12    47161975    rs2465584    G    T    60.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.05;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266579    GT:AD:DP:GQ:PL    0/1:3,3:6:90.27:90,0,93
12    47162938    rs2216433    T    G    150.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266579    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:183,15,0
12    47163306    rs180403    C    T    86.09    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=6.62;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266579    GT:AD:DP:GQ:PL    0/1:7,6:13:99:116,0,220
12    47168898    rs180414    G    A    2203.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9974;MQ=59.23;MQ0=0;QD=30.19;SNPEFF_AMINO_ACID_CHANGE=P411;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_47168832_47168956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266579    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2237,172,0
12    47170617    rs77993723    A    G    579.69    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.995;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.865;MQ=59.44;MQ0=0;MQRankSum=-0.3;QD=14.14;ReadPosRankSum=1.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546940    GT:AD:DP:GQ:PL    0/1:20,21:41:99:610,0,693
12    47170621    rs12316767    C    A    747.75    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.865;MQ=59.44;MQ0=0;MQRankSum=-0.34;QD=18.24;ReadPosRankSum=1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546940    GT:AD:DP:GQ:PL    0/1:18,22:41:99:778,0,635
12    47170887    rs180419    C    A    74.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.67;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546940    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,147
12    47173662    rs180426    A    G    466.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.149;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.36;MQ0=0;MQRankSum=2.085;QD=12.96;ReadPosRankSum=-0.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546940    GT:AD:DP:GQ:PL    0/1:20,16:36:99:496,0,726
12    47173830    rs2287471    G    A    430.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=32;Dels=0.0;FS=3.841;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.66;QD=13.46;ReadPosRankSum=0.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266579    GT:AD:DP:GQ:PL    0/1:16,16:32:99:461,0,495
12    47178307    rs180430    A    G    661.81    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.14;MQ0=0;MQRankSum=0.241;QD=12.26;ReadPosRankSum=-0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266579    GT:AD:DP:GQ:PL    0/1:29,25:54:99:692,0,829
12    47182531    rs76191003    C    T    72.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266579    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:103,0,31
12    47471037    rs854889    A    C    54.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMIGO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321382    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
12    47471439    rs2269828    G    A    479.58    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.609;DB;DP=39;Dels=0.0;FS=4.748;HRun=0;HaplotypeScore=1.9155;MQ=59.41;MQ0=0;MQRankSum=0.659;QD=12.3;ReadPosRankSum=1.15;SNPEFF_AMINO_ACID_CHANGE=P449;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_47469490_47472848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMIGO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266581    GT:AD:DP:GQ:PL    0/1:23,16:39:99:510,0,481
12    47761212    rs58616    G    A    415.74    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.811;QD=14.34;ReadPosRankSum=-0.851;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-493L12.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550019    GT:AD:DP:GQ:PL    0/1:15,14:29:99:446,0,394
12    47761313    rs11419253    A    AT    108.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=11;HaplotypeScore=30.6218;IndelType=I;MQ=61.53;MQ0=0;QD=15.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-493L12.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550019    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:151,15,0
12    48084556    rs1233054    C    T    476.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005386    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:509,39,0
12    48110325    rs1235153    A    G    476.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229003    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:509,39,0
12    48110551    rs1233062    A    C    263.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229003    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:297,24,0
12    48119016    rs7967336    C    G    454.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229003    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:487,36,0
12    48119049    rs7967546    G    A    841.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7845;MQ=59.07;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENDOU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229003    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:874,66,0
12    48132451    rs2072116    T    C    951.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473777    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:985,75,0
12    48134300    rs12828238    G    A    333.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395358    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:366,27,0
12    48134381    rs35703007    CG    C    761.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=6;HaplotypeScore=92.358;IndelType=D;MQ=60.42;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395358    GT:AD:DP:GQ:PL    1/1:0,26:26:75.19:804,75,0
12    48134634    rs11168219    C    T    519.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395358    GT:AD:DP:GQ:PL    1/1:0,16:16:45.09:552,45,0
12    48134695    rs2074533    T    C    493.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395358    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:527,39,0
12    48142343    rs12424297    T    C    808.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466322    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:841,63,0
12    48142418    rs757281    C    G    308.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466322    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:342,27,0
12    48142636    rs12422983    C    T    1696.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.56;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=G21S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48142602_48142714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541821    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1730,129,0
12    48143095    .    G    GCTCTGGT    1958.61    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=100.717;IndelType=I;MQ=40.44;MQ0=0;QD=89.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466322    GT:AD:DP:GQ:PL    1/1:5,15:22:60.21:2001,60,0
12    48143360    rs757280    T    C    33.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466322    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:65,6,0
12    48143978    rs12423645    C    T    381.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495953    GT:AD:DP:GQ:PL    1/1:0,12:13:33.09:414,33,0
12    48144243    rs757279    A    C    178.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=55.19;MQ0=0;QD=19.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495953    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:211,18,0
12    48144925    rs2016123    T    C    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=R151G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48144831_48144999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000171000    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
12    48145104    rs1018939    G    A    199.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549347    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
12    48145153    rs757287    G    A    388.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549347    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:421,33,0
12    48145171    rs757286    C    T    469.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549347    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:503,39,0
12    48151822    rs11168230    C    G    110.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.08;SNPEFF_AMINO_ACID_CHANGE=A16P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48151649_48151861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAPGEF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389212    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:143,12,0
12    48182087    rs7959510    C    T    400.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477937    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:433,33,0
12    48190985    rs12820931    C    T    507.22    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.676;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=14.09;ReadPosRankSum=0.602;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417107    GT:AD:DP:GQ:PL    0/1:17,19:36:99:537,0,530
12    48191083    rs61640980    G    C    66.85    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=13.37;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417107    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:97,0,30
12    48195939    rs2525051    G    C    223.66    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=14;Dels=0.0;FS=2.688;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.965;QD=15.98;ReadPosRankSum=-0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000080059    GT:AD:DP:GQ:PL    0/1:6,8:14:99:254,0,154
12    48238757    rs731236    A    G    588.46    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.261;DB;DP=43;Dels=0.0;FS=4.531;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.013;QD=13.69;ReadPosRankSum=1.398;SNPEFF_AMINO_ACID_CHANGE=I320;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48238253_48238788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535672    GT:AD:DP:GQ:PL    0/1:21,22:43:99:618,0,609
12    48238837    rs7975232    C    A    354.28    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.557;QD=13.12;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229022    GT:AD:DP:GQ:PL    0/1:12,15:27:99:384,0,333
12    48251533    rs11168266    C    T    211.17    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=16.24;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229022    GT:AD:DP:GQ:PL    0/1:4,9:13:99:241,0,120
12    48272895    rs2228570    A    G    112.43    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=0.967;DB;DP=25;Dels=0.0;FS=8.089;HRun=0;HaplotypeScore=0.8941;MQ=59.25;MQ0=0;MQRankSum=-0.1;QD=4.5;ReadPosRankSum=-0.233;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_12_48272751_48272898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDR;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000229022    GT:AD:DP:GQ:PL    0/1:18,7:25:99:142,0,580
12    48295488    rs10783219    T    A    529.09    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=2.01;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=21.16;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229022    GT:AD:DP:GQ:PL    0/1:8,17:25:99:559,0,257
12    48358279    rs11609253    C    A    251.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM106C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256686    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
12    48359389    rs12721421    G    A    400.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.234;QD=22.26;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM106C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548153    GT:AD:DP:GQ:PL    0/1:6,12:18:99:431,0,139
12    48359527    rs7964582    G    A    6527.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=185;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8643;MQ=59.88;MQ0=0;QD=35.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM106C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548153    GT:AD:DP:GQ:PL    1/1:0,184:185:99:6528,485,0
12    48359984    rs2286025    C    T    971.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=S104F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48359872_48360012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM106C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000552546    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1004,75,0
12    48360620    rs2286024    A    G    795.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM106C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546749    GT:AD:DP:GQ:PL    1/1:0,22:22:63.18:829,63,0
12    48361282    rs2286023    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM106C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546749    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    48367976    rs2070739    C    T    1064.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.621;DB;DP=31;Dels=0.0;FS=4.914;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=34.35;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=G1336S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48367872_48368114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337299    GT:AD:DP:GQ:PL    1/1:1,30:31:44.64:1098,45,0
12    48368085    rs12721379    G    A    430.82    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.039;DB;DP=24;Dels=0.0;FS=1.603;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.787;QD=17.95;ReadPosRankSum=0.787;SNPEFF_AMINO_ACID_CHANGE=P1299;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48367872_48368114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337299    GT:AD:DP:GQ:PL    0/1:9,15:24:99:461,0,242
12    48376969    rs11168338    C    A    109.10    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.82;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337299    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:139,0,27
12    48377970    rs1635550    A    G    51.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=10.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337299    GT:AD:DP:GQ:PL    0/1:2,3:5:65.53:81,0,66
12    48380334    rs55971353    G    C    41.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=8.21;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337299    GT:AD:DP:GQ:PL    1/1:1,4:5:6.01:72,6,0
12    48386553    rs1635534    A    G    185.77    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=16.89;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474996    GT:AD:DP:GQ:PL    0/1:3,8:11:96.78:216,0,97
12    48386577    rs1793915    G    T    269.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=22.42;ReadPosRankSum=1.294;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474996    GT:AD:DP:GQ:PL    0/1:3,9:12:89.59:299,0,90
12    48388830    rs2248990    C    T    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466884    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
12    48388856    rs2276453    A    C    85.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466884    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
12    48389023    rs10875716    C    T    420.26    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.77;DB;DP=39;Dels=0.0;FS=4.891;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.524;QD=10.78;ReadPosRankSum=-1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466884    GT:AD:DP:GQ:PL    0/1:22,17:39:99:450,0,666
12    48389643    rs1034762    A    C    465.34    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.487;DB;DP=49;Dels=0.0;FS=4.341;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.711;QD=9.5;ReadPosRankSum=0.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466884    GT:AD:DP:GQ:PL    0/1:31,18:49:99:495,0,1040
12    48390080    rs1793959    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466884    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    48393444    rs1635532    C    T    329.96    HaplotypeScoreFilter13    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=38;Dels=0.03;FS=3.136;HRun=1;HaplotypeScore=17.2282;MQ=48.24;MQ0=0;MQRankSum=-0.249;QD=8.46;ReadPosRankSum=-0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465743    GT:AD:DP:GQ:PL    0/1:11,21:38:99:360,0,250
12    48393526    rs1793953    G    A    1792.41    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=6.442;DB;DP=118;Dels=0.0;FS=1.855;HRun=0;HaplotypeScore=4.5005;MQ=57.41;MQ0=0;MQRankSum=0.995;QD=15.19;ReadPosRankSum=0.505;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465743    GT:AD:DP:GQ:PL    0/1:56,62:118:99:1822,0,1314
12    48441692    rs1018973    C    G    533.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.116;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.395;QD=19.05;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004980    GT:AD:DP:GQ:PL    0/1:12,16:28:99:563,0,407
12    48443048    rs7975632    T    C    340.24    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.778;QD=24.3;ReadPosRankSum=-1.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004980    GT:AD:DP:GQ:PL    0/1:3,11:14:88.81:370,0,89
12    48457385    rs3742074    C    T    427.97    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.548;QD=14.76;ReadPosRankSum=-1.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551358    GT:AD:DP:GQ:PL    0/1:16,13:29:99:458,0,546
12    48459488    rs17122612    C    G    412.32    PASS    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=0.255;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.444;QD=27.49;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004980    GT:AD:DP:GQ:PL    0/1:2,13:15:39.63:442,0,40
12    48460563    rs77759793    G    A    174.46    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=21.81;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004980    GT:AD:DP:GQ:PL    0/1:2,6:8:59.58:204,0,60
12    48465425    rs72644844    A    C    418.88    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.593;DB;DP=29;Dels=0.0;FS=4.821;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.331;QD=14.44;ReadPosRankSum=1.593;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004980    GT:AD:DP:GQ:PL    0/1:15,14:29:99:449,0,539
12    48468652    rs4258439    A    G    659.79    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=43;Dels=0.0;FS=2.105;HRun=1;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=-1.56;QD=15.34;ReadPosRankSum=-0.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004980    GT:AD:DP:GQ:PL    0/1:21,22:43:99:690,0,623
12    48491653    .    T    A    276.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.709;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.059;QD=18.45;ReadPosRankSum=-1.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004980    GT:AD:DP:GQ:PL    0/1:6,9:15:99:307,0,204
12    48499131    rs2408955    G    T    1167.45    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=80;Dels=0.0;FS=2.166;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.025;QD=14.59;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SENP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004980    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1197,0,1176
12    48501161    rs11609399    A    T    2146.18    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=5.458;DB;DP=149;Dels=0.0;FS=2.137;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.096;QD=14.4;ReadPosRankSum=-0.974;SNPEFF_AMINO_ACID_CHANGE=H2L;SNPEFF_CODON_CHANGE=cAt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48501148_48501238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340802    GT:AD:DP:GQ:PL    0/1:75,74:149:99:2176,0,2258
12    48534727    .    TC    T    124.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DP=8;FS=5.441;HRun=1;HaplotypeScore=61.0892;IndelType=D;MQ=54.56;MQ0=0;MQRankSum=0.198;QD=15.61;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552989    GT:AD:DP:GQ:PL    0/1:2,6:8:74.94:164,0,75
12    48537624    rs4075913    A    G    492.65    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=43;Dels=0.0;FS=6.983;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.484;QD=11.46;ReadPosRankSum=1.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317697    GT:AD:DP:GQ:PL    0/1:23,20:43:99:523,0,709
12    48539482    rs8716    T    G    456.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=30;Dels=0.0;FS=6.107;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.286;QD=15.23;ReadPosRankSum=-0.581;SNPEFF_AMINO_ACID_CHANGE=A747;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48539347_48539887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395233    GT:AD:DP:GQ:PL    0/1:15,15:30:99:487,0,460
12    48547128    rs11168428    C    T    1010.09    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.627;DB;DP=94;Dels=0.0;FS=1.675;HRun=1;HaplotypeScore=0.5784;MQ=59.75;MQ0=0;MQRankSum=0.407;QD=10.75;ReadPosRankSum=0.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317697    GT:AD:DP:GQ:PL    0/1:55,39:94:99:1040,0,1648
12    48723324    rs2732441    C    G    180.58    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=15;Dels=0.0;FS=8.024;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.099;QD=12.04;ReadPosRankSum=0.405;SNPEFF_AMINO_ACID_CHANGE=R84G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48722763_48724062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H1FNT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335017    GT:AD:DP:GQ:PL    0/1:8,7:15:99:211,0,225
12    48736985    rs2732481    T    G    477.68    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.325;DB;DP=44;Dels=0.0;FS=6.511;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.475;QD=10.86;ReadPosRankSum=-1.157;SNPEFF_AMINO_ACID_CHANGE=Q340P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48736204_48737510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF641;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448928    GT:AD:DP:GQ:PL    0/1:23,21:44:99:508,0,818
12    48737245    rs2732484    A    C    584.60    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.182;DB;DP=45;Dels=0.0;FS=14.886;HRun=4;HaplotypeScore=0.8321;MQ=59.49;MQ0=0;MQRankSum=0.474;QD=12.99;ReadPosRankSum=-1.348;SNPEFF_AMINO_ACID_CHANGE=G253;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48736204_48737510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF641;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448928    GT:AD:DP:GQ:PL    0/1:22,23:45:99:615,0,626
12    48738555    rs34591795    GA    G    157.07    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=64.6695;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=-0.048;QD=7.48;ReadPosRankSum=-0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF641;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548932    GT:AD:DP:GQ:PL    0/1:12,9:21:99:196,0,226
12    48740855    rs2634675    A    G    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF641;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550342    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,104
12    48741219    rs901962    A    T    114.92    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=14.37;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF641;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301042    GT:AD:DP:GQ:PL    0/1:3,5:8:91.98:145,0,92
12    48876718    rs35033434    CT    C    474.46    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=5.201;DB;DP=59;FS=3.232;HRun=11;HaplotypeScore=187.6318;IndelType=D;MQ=58.82;MQ0=0;MQRankSum=-0.818;QD=8.04;ReadPosRankSum=-1.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314014    GT:AD:DP:GQ:PL    0/1:31,27:59:99:513,0,668
12    48877056    rs7972785    T    C    1282.34    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.139;DB;DP=101;Dels=0.0;FS=9.645;HRun=2;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.935;QD=12.7;ReadPosRankSum=-1.537;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548913    GT:AD:DP:GQ:PL    0/1:51,50:101:99:1312,0,1633
12    48879951    rs11168599    T    G    531.23    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.215;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.414;QD=15.18;ReadPosRankSum=0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314014    GT:AD:DP:GQ:PL    0/1:16,19:35:99:561,0,529
12    48882562    rs2705126    C    A    145.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.951;QD=14.58;ReadPosRankSum=1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548913    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,179
12    48888594    rs11458    C    T    1435.29    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.966;DB;DP=92;Dels=0.0;FS=4.094;HRun=1;HaplotypeScore=0.6651;MQ=59.75;MQ0=0;MQRankSum=-1.729;QD=15.6;ReadPosRankSum=1.01;SNPEFF_AMINO_ACID_CHANGE=P86S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48888581_48888762;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314014    GT:AD:DP:GQ:PL    0/1:43,49:92:99:1465,0,1348
12    48888689    rs9268    C    G    1886.14    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.214;DB;DP=111;Dels=0.0;FS=1.533;HRun=0;HaplotypeScore=3.7208;MQ=59.62;MQ0=0;MQRankSum=0.371;QD=16.99;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=L117;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48888581_48888762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314014    GT:AD:DP:GQ:PL    0/1:49,62:111:99:1916,0,1514
12    48888763    rs2705132    A    G    2047.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.92;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf54;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000549398    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2081,150,0
12    48919213    rs12371700    T    G    53.87    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.214;QD=5.39;ReadPosRankSum=0.296;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR8S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551654    GT:AD:DP:GQ:PL    0/1:7,3:10:83.86:84,0,252
12    48919556    rs2731073    A    G    1157.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.147;DB;DP=88;Dels=0.0;FS=2.89;HRun=0;HaplotypeScore=0.5784;MQ=59.48;MQ0=0;MQRankSum=0.644;QD=13.15;ReadPosRankSum=0.644;SNPEFF_AMINO_ACID_CHANGE=M48V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48919415_48920302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR8S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310194    GT:AD:DP:GQ:PL    0/1:48,40:88:99:1188,0,1482
12    48919659    rs4075258    T    C    227.10    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=0.203;DB;DP=44;Dels=0.0;FS=3.167;HRun=1;HaplotypeScore=0.9995;MQ=59.48;MQ0=0;MQRankSum=-0.826;QD=5.16;ReadPosRankSum=-0.203;SNPEFF_AMINO_ACID_CHANGE=L82P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48919415_48920302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR8S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310194    GT:AD:DP:GQ:PL    0/1:31,13:44:99:257,0,1045
12    48919660    rs35367885    G    A    227.26    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.515;DB;DP=43;Dels=0.0;FS=3.384;HRun=0;HaplotypeScore=0.9995;MQ=59.46;MQ0=0;MQRankSum=-0.2;QD=5.29;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=L82;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48919415_48920302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR8S1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310194    GT:AD:DP:GQ:PL    0/1:31,12:43:99:257,0,1066
12    48919796    rs12425460    C    T    904.25    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.736;DB;DP=65;Dels=0.0;FS=4.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.203;QD=13.91;ReadPosRankSum=-0.02;SNPEFF_AMINO_ACID_CHANGE=R128C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_48919415_48920302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OR8S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310194    GT:AD:DP:GQ:PL    0/1:32,33:65:99:934,0,1001
12    48953368    rs10875833    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    48953466    rs10747550    A    G    471.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:505,42,0
12    48953504    rs11168637    G    A    575.20    PASS    AB=0.15;AC=1;AF=0.50;AN=2;BaseQRankSum=2.54;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.799;QD=28.76;ReadPosRankSum=-0.635;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    0/1:3,17:20:56.98:605,0,57
12    48953571    rs11168638    C    A    439.95    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=47;Dels=0.0;FS=10.361;HRun=0;HaplotypeScore=1.8664;MQ=59.51;MQ0=0;MQRankSum=-0.984;QD=9.36;ReadPosRankSum=1.476;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    0/1:32,15:47:99:470,0,1030
12    48953682    rs11168639    G    A    2121.37    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=149;Dels=0.0;FS=3.093;HRun=1;HaplotypeScore=0.734;MQ=59.69;MQ0=0;MQRankSum=-0.086;QD=14.24;ReadPosRankSum=2.856;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    0/1:76,73:149:99:2151,0,2252
12    48953932    rs17237198    G    A    792.82    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.214;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5777;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=11.66;ReadPosRankSum=-1.354;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    0/1:37,31:68:99:823,0,1225
12    48954030    rs61995742    G    A    432.01    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.828;DB;DP=34;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.8321;MQ=59.32;MQ0=0;MQRankSum=-0.17;QD=12.71;ReadPosRankSum=0.019;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    0/1:16,18:34:99:462,0,524
12    48954040    rs1807757    A    G    921.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;QD=29.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    1/1:0,31:31:78.21:954,78,0
12    48954175    rs17834022    C    T    1744.96    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.138;DB;DP=106;Dels=0.0;FS=0.789;HRun=0;HaplotypeScore=2.3479;MQ=59.82;MQ0=0;MQRankSum=-0.563;QD=16.46;ReadPosRankSum=-0.756;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    0/1:49,57:106:99:1775,0,1473
12    48954225    rs7312017    G    C    4665.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5705;MQ=59.28;MQ0=0;QD=32.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-722P11.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328207    GT:AD:DP:GQ:PL    1/1:0,142:142:99:4665,355,0
12    49047912    rs143827771    C    T    1464.68    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=99;Dels=0.0;FS=2.676;HRun=3;HaplotypeScore=1.6643;MQ=59.77;MQ0=0;MQRankSum=0.526;QD=14.79;ReadPosRankSum=-2.269;SNPEFF_AMINO_ACID_CHANGE=R179Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49047617_49047958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547087    GT:AD:DP:GQ:PL    0/1:44,54:99:99:1495,0,1229
12    49048738    rs3741628    G    T    1374.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=P159T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49048724_49048843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547087    GT:AD:DP:GQ:PL    1/1:2,39:41:99:1407,105,0
12    49048985    rs6580690    G    A    246.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420613    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
12    49054491    rs3741629    G    C    430.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357861    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:463,36,0
12    49065727    rs7303113    T    C    4517.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8574;MQ=59.5;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=T125;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49065702_49065745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000550931    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4518,364,0
12    49073156    rs7295027    G    A    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548254    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    49073358    rs3741630    A    T    1364.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=36.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548254    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1397,105,0
12    49086963    rs3741632    G    A    1887.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=P678;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49082247_49088219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261900    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1920,141,0
12    49087656    rs3013    G    C    2162.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.36;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=P447;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49082247_49088219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261900    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2196,178,0
12    49091972    rs113471288    G    GA    416.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.197;DB;DP=24;FS=0.0;HRun=13;HaplotypeScore=95.5236;IndelType=I;MQ=57.54;MQ0=0;MQRankSum=1.197;QD=17.36;ReadPosRankSum=-1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261900    GT:AD:DP:GQ:PL    1/1:6,18:24:20.21:459,20,0
12    49093729    rs7308699    C    T    1099.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261900    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1133,84,0
12    49110223    rs11168699    C    A    1523.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=57.25;MQ0=0;QD=25.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261900    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1556,144,0
12    49110225    rs11168700    C    A    1667.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=57.35;MQ0=0;QD=26.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261900    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1700,150,0
12    49110248    rs1110432    G    A    2506.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.79;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261900    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2539,193,0
12    49162598    rs7300155    G    A    450.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.4;MQ0=0;MQRankSum=1.92;QD=11.0;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548351    GT:AD:DP:GQ:PL    0/1:24,16:41:99:481,0,781
12    49167143    rs3729969    T    A    102.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=11.34;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548820    GT:AD:DP:GQ:PL    0/1:4,5:9:99:132,0,117
12    49167202    rs3729980    A    C    279.31    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=18;Dels=0.0;FS=2.527;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=14.7;ReadPosRankSum=0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548820    GT:AD:DP:GQ:PL    0/1:8,10:18:99:309,0,239
12    49167683    rs3730074    C    A    96.54    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.78;ReadPosRankSum=1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548820    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,221
12    49168128    rs3730072    G    C    120.95    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=15.12;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548820    GT:AD:DP:GQ:PL    0/1:3,5:8:99:151,0,106
12    49168848    rs3730070    G    C    32.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=10.77;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548820    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:62,0,33
12    49169262    rs3730069    T    A    380.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=26;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=14.65;ReadPosRankSum=-0.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548820    GT:AD:DP:GQ:PL    0/1:13,13:26:99:411,0,390
12    49170719    rs11168733    G    A    447.18    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.542;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.748;QD=10.65;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548820    GT:AD:DP:GQ:PL    0/1:22,20:42:99:477,0,581
12    49218171    rs2070615    A    G    302.87    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.643;DB;DP=35;Dels=0.0;FS=3.643;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.469;QD=8.65;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CACNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547693    GT:AD:DP:GQ:PL    0/1:23,12:35:99:333,0,726
12    49218810    rs36045214    G    GT    413.54    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.67;DB;DP=23;FS=8.686;HRun=2;HaplotypeScore=55.984;IndelType=I;MQ=58.99;MQ0=0;MQRankSum=0.099;QD=17.98;ReadPosRankSum=0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CACNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547693    GT:AD:DP:GQ:PL    0/1:11,12:23:99:453,0,300
12    49219569    rs2453469    A    G    584.40    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=3.59;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8317;MQ=60.0;MQ0=0;MQRankSum=-0.126;QD=21.64;ReadPosRankSum=0.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CACNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547693    GT:AD:DP:GQ:PL    0/1:10,17:27:99:614,0,268
12    49221622    rs1045340    G    A    509.04    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.856;DB;DP=36;Dels=0.0;FS=7.42;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=14.14;ReadPosRankSum=-0.158;SNPEFF_AMINO_ACID_CHANGE=E424;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49221368_49222724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CACNB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547230    GT:AD:DP:GQ:PL    0/1:19,17:36:99:539,0,587
12    49225758    rs2453471    C    T    314.25    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.457;QD=20.95;ReadPosRankSum=-1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CACNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301050    GT:AD:DP:GQ:PL    0/1:4,11:15:99:344,0,124
12    49226871    rs145915011    G    A    47.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CACNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301050    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
12    49230035    rs1057908    T    G    1378.60    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=5.359;DB;DP=93;Dels=0.0;FS=11.653;HRun=1;HaplotypeScore=0.9983;MQ=59.5;MQ0=0;MQRankSum=1.312;QD=14.82;ReadPosRankSum=-0.196;SNPEFF_AMINO_ACID_CHANGE=I417;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49229904_49230049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308025    GT:AD:DP:GQ:PL    0/1:44,49:93:99:1409,0,1362
12    49231948    .    A    G    377.56    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=3.114;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.3;MQ0=0;MQRankSum=-0.2;QD=11.44;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551468    GT:AD:DP:GQ:PL    0/1:19,14:33:99:408,0,681
12    49237536    rs61941108    T    C    83.25    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.731;QD=16.65;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308025    GT:AD:DP:GQ:PL    0/1:1,4:5:27.27:113,0,27
12    49239229    rs75812246    G    A    107.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.48;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308025    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,104
12    49255798    rs1565933    G    C    340.81    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.02;DB;DP=39;Dels=0.0;FS=3.638;HRun=0;HaplotypeScore=0.7887;MQ=57.95;MQ0=0;MQRankSum=-0.078;QD=8.74;ReadPosRankSum=0.986;SNPEFF_AMINO_ACID_CHANGE=L104;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49255792_49255901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309739    GT:AD:DP:GQ:PL    0/1:25,14:39:99:371,0,655
12    49255964    rs17123362    G    A    526.87    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.803;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.401;QD=20.26;ReadPosRankSum=1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309739    GT:AD:DP:GQ:PL    0/1:9,17:26:99:557,0,284
12    49298059    rs3809147    G    A    1453.82    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=111;Dels=0.0;FS=1.703;HRun=2;HaplotypeScore=1.7873;MQ=60.0;MQ0=0;MQRankSum=1.101;QD=13.1;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398092    GT:AD:DP:GQ:PL    0/1:58,53:111:99:1484,0,1849
12    49298340    rs3825184    C    T    185.69    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.305;DB;DP=33;Dels=0.0;FS=3.099;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.048;QD=5.63;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398092    GT:AD:DP:GQ:PL    0/1:24,9:33:99:216,0,799
12    49308284    rs10747556    A    G    762.41    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.279;DB;DP=59;Dels=0.0;FS=3.848;HRun=0;HaplotypeScore=2.7789;MQ=59.53;MQ0=0;MQRankSum=1.062;QD=12.92;ReadPosRankSum=0.423;SNPEFF_AMINO_ACID_CHANGE=H133R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49308187_49308356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC65;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266984    GT:AD:DP:GQ:PL    0/1:31,28:59:99:792,0,928
12    49308475    rs10783293    G    A    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398092    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,106
12    49312432    rs10783294    C    T    118.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.231;DB;DP=18;Dels=0.0;FS=10.792;HRun=1;HaplotypeScore=0.9665;MQ=58.71;MQ0=0;MQRankSum=-1.171;QD=6.58;ReadPosRankSum=-0.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073610.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537495    GT:AD:DP:GQ:PL    0/1:12,6:18:99:148,0,455
12    49312593    rs10875893    A    G    394.80    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=49;Dels=0.0;FS=2.587;HRun=1;HaplotypeScore=0.9987;MQ=59.15;MQ0=0;MQRankSum=-0.776;QD=8.06;ReadPosRankSum=-0.604;SNPEFF_AMINO_ACID_CHANGE=R208;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49312468_49312686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC65;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552942    GT:AD:DP:GQ:PL    0/1:32,17:49:99:425,0,1062
12    49314862    rs10875894    C    A    265.23    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.171;DB;DP=34;Dels=0.0;FS=1.519;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=7.8;ReadPosRankSum=-0.45;SNPEFF_AMINO_ACID_CHANGE=T289;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49314713_49314865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC65;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552942    GT:AD:DP:GQ:PL    0/1:22,12:34:99:295,0,813
12    49314994    rs4760600    A    G    540.76    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.704;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.125;QD=11.27;ReadPosRankSum=-0.852;SNPEFF_AMINO_ACID_CHANGE=Y305C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49314951_49315200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC65;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000552942    GT:AD:DP:GQ:PL    0/1:27,21:48:99:571,0,867
12    49318546    rs2293449    G    A    36.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.21;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320516    GT:AD:DP:GQ:PL    0/1:3,2:5:66.03:66,0,97
12    49319036    rs12829682    A    C    443.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320516    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:477,39,0
12    49325142    rs11168794    G    A    283.36    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=14.91;ReadPosRankSum=-0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256682    GT:AD:DP:GQ:PL    0/1:6,13:19:99:313,0,197
12    49333896    rs75906071    G    GA    324.54    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.693;DB;DP=28;FS=4.869;HRun=8;HaplotypeScore=60.9575;IndelType=I;MQ=58.89;MQ0=0;MQRankSum=1.383;QD=11.59;ReadPosRankSum=-0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472621    GT:AD:DP:GQ:PL    0/1:16,12:28:99:364,0,303
12    49334598    rs1726435    C    T    153.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.271;QD=10.94;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472621    GT:AD:DP:GQ:PL    0/1:6,8:14:99:183,0,162
12    49334599    rs1690183    A    G    330.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=23.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472621    GT:AD:DP:GQ:PL    1/1:0,14:14:36.06:364,36,0
12    49334762    rs12122    G    C    3321.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.7552;MQ=59.77;MQ0=0;QD=32.57;SNPEFF_AMINO_ACID_CHANGE=L39;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49334731_49334971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256682    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3322,259,0
12    49334982    rs10747557    G    C    681.37    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.407;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.091;QD=22.71;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC073610.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456304    GT:AD:DP:GQ:PL    0/1:9,21:30:99:711,0,275
12    49359989    rs1051886    G    A    330.90    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.023;DB;DP=28;Dels=0.0;FS=12.674;HRun=0;HaplotypeScore=0.9332;MQ=59.17;MQ0=0;MQRankSum=0.162;QD=11.82;ReadPosRankSum=-2.066;SNPEFF_AMINO_ACID_CHANGE=H353;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49359123_49360336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT10B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301061    GT:AD:DP:GQ:PL    0/1:16,12:28:99:361,0,485
12    49362779    rs833834    T    G    36.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
12    49390677    rs10783299    T    C    429.19    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.895;QD=14.31;ReadPosRankSum=2.16;SNPEFF_AMINO_ACID_CHANGE=E661G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49388932_49392449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421952    GT:AD:DP:GQ:PL    0/1:14,16:30:99:459,0,434
12    49398862    rs2293445    G    A    1382.87    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=99;Dels=0.0;FS=0.776;HRun=0;HaplotypeScore=2.5149;MQ=58.11;MQ0=0;MQRankSum=-0.191;QD=13.97;ReadPosRankSum=0.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547082    GT:AD:DP:GQ:PL    0/1:51,48:99:99:1413,0,1505
12    49416046    rs34546217    TC    T    1506.81    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=4.107;DB;DP=84;FS=0.891;HRun=2;HaplotypeScore=264.5388;IndelType=D;MQ=59.49;MQ0=0;MQRankSum=0.537;QD=17.94;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301067    GT:AD:DP:GQ:PL    0/1:37,47:84:99:1546,0,1354
12    49421179    rs833817    G    C    1176.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552391    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1210,93,0
12    49424616    rs11614738    G    A    353.09    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.496;DB;DP=31;Dels=0.0;FS=1.446;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.409;QD=11.39;ReadPosRankSum=1.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549743    GT:AD:DP:GQ:PL    0/1:17,14:31:99:383,0,606
12    49424873    rs150012622    TTCTG    T    2153.14    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=6.477;DB;DP=95;FS=1.769;HRun=0;HaplotypeScore=463.2426;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=-2.133;QD=22.66;ReadPosRankSum=3.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549743    GT:AD:DP:GQ:PL    0/1:52,43:95:99:2192,0,2866
12    49425978    rs3741622    T    C    865.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.109;DB;DP=70;Dels=0.0;FS=0.952;HRun=0;HaplotypeScore=1.5362;MQ=59.73;MQ0=0;MQRankSum=0.754;QD=12.36;ReadPosRankSum=-1.527;SNPEFF_AMINO_ACID_CHANGE=P4170;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49424958_49427747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301067    GT:AD:DP:GQ:PL    0/1:35,35:70:99:895,0,1057
12    49427652    rs3782357    C    T    595.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.328;DB;DP=50;Dels=0.0;FS=10.927;HRun=1;HaplotypeScore=0.9979;MQ=59.54;MQ0=0;MQRankSum=-1.455;QD=11.91;ReadPosRankSum=-1.261;SNPEFF_AMINO_ACID_CHANGE=Q3612;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49424958_49427747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301067    GT:AD:DP:GQ:PL    0/1:25,25:50:99:626,0,874
12    49434074    rs10747559    C    A    272.83    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.734;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=10.49;ReadPosRankSum=-1.006;SNPEFF_AMINO_ACID_CHANGE=G2493;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49433507_49435318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301067    GT:AD:DP:GQ:PL    0/1:12,14:26:99:303,0,350
12    49436724    rs12580349    A    G    391.13    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.23;MQ0=0;MQRankSum=-0.417;QD=13.04;ReadPosRankSum=1.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550356    GT:AD:DP:GQ:PL    0/1:17,13:30:99:421,0,537
12    49439659    rs833818    C    T    763.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301067    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:797,60,0
12    49442356    rs5798090    C    CA    1144.40    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.007;DB;DP=50;FS=0.0;HRun=3;HaplotypeScore=120.8144;IndelType=I;MQ=60.16;MQ0=0;MQRankSum=-0.361;QD=22.89;ReadPosRankSum=-0.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301067    GT:AD:DP:GQ:PL    0/1:19,31:50:99:1183,0,427
12    49442813    rs2304275    T    C    64.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=9.23;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301067    GT:AD:DP:GQ:PL    0/1:4,3:7:94.60:95,0,141
12    49444545    rs2241726    G    A    246.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=15;Dels=0.0;FS=2.059;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=16.46;ReadPosRankSum=-0.177;SNPEFF_AMINO_ACID_CHANGE=I942;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49443465_49444573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301067    GT:AD:DP:GQ:PL    0/1:6,9:15:99:277,0,209
12    49485279    .    C    G    107.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266991    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,179
12    49495321    rs35541634    C    A    166.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.581;QD=11.9;ReadPosRankSum=-0.968;SNPEFF_AMINO_ACID_CHANGE=V23;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49495255_49495332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LMBR1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552449    GT:AD:DP:GQ:PL    0/1:8,6:14:99:197,0,246
12    49582657    rs35896524    G    A    925.62    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.968;DB;DP=58;Dels=0.0;FS=1.455;HRun=0;HaplotypeScore=1.8311;MQ=58.8;MQ0=0;MQRankSum=0.238;QD=15.96;ReadPosRankSum=-0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301071    GT:AD:DP:GQ:PL    0/1:26,32:58:99:956,0,676
12    49667103    rs9668136    A    T    478.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_AMINO_ACID_CHANGE=K323M;SNPEFF_CODON_CHANGE=aAg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49666939_49667116;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TUBA1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321665    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:512,39,0
12    49691387    .    C    A    203.87    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.144;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=1.299;QD=11.99;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451891    GT:AD:DP:GQ:PL    0/1:8,9:17:99:234,0,251
12    49883204    rs4993294    G    T    327.85    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.505;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.66;QD=20.49;ReadPosRankSum=-1.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548777    GT:AD:DP:GQ:PL    0/1:3,12:15:82.76:358,0,83
12    49884336    rs61375453    C    T    42.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6212;MQ=53.95;MQ0=0;MQRankSum=-1.368;QD=5.36;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548710    GT:AD:DP:GQ:PL    0/1:4,4:8:72.86:73,0,148
12    49884651    rs80144643    G    T    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548710    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
12    49934565    rs7132792    G    A    30.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=3.85;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257981    GT:AD:DP:GQ:PL    0/1:5,3:8:60.82:61,0,150
12    49937654    rs11337899    GC    G    492.48    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=38;FS=1.448;HRun=7;HaplotypeScore=102.3428;IndelType=D;MQ=59.39;MQ0=0;MQRankSum=-0.628;QD=12.96;ReadPosRankSum=0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257981    GT:AD:DP:GQ:PL    0/1:17,21:38:99:532,0,491
12    49937813    rs1150057    A    G    814.69    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.387;DB;DP=61;Dels=0.0;FS=3.747;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.599;QD=13.36;ReadPosRankSum=0.265;SNPEFF_AMINO_ACID_CHANGE=A313;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49937698_49937855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257981    GT:AD:DP:GQ:PL    0/1:30,31:61:99:845,0,964
12    49937912    rs1150058    G    A    404.98    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.301;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=1.451;QD=16.2;ReadPosRankSum=-1.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550434    GT:AD:DP:GQ:PL    0/1:11,14:25:99:435,0,351
12    49943122    rs933738    A    G    357.04    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.869;DB;DP=28;Dels=0.0;FS=8.159;HRun=2;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=-1.244;QD=12.75;ReadPosRankSum=0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551415    GT:AD:DP:GQ:PL    0/1:13,15:28:99:387,0,375
12    49943840    rs2278070    C    T    108.18    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.35;MQ0=0;MQRankSum=1.977;QD=8.32;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551415    GT:AD:DP:GQ:PL    0/1:8,5:13:99:138,0,227
12    49948105    rs3815832    A    G    626.13    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.465;DB;DP=50;Dels=0.0;FS=2.924;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.414;QD=12.52;ReadPosRankSum=0.838;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCRS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343810    GT:AD:DP:GQ:PL    0/1:28,22:50:99:656,0,803
12    49950050    rs111466998    G    A    190.59    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.307;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.437;QD=8.29;ReadPosRankSum=-1.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCRS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343810    GT:AD:DP:GQ:PL    0/1:16,7:23:99:221,0,436
12    49951232    rs2241418    T    C    104.87    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=2.275;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.015;QD=4.37;ReadPosRankSum=-0.945;SNPEFF_AMINO_ACID_CHANGE=G916;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49951137_49952077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257981    GT:AD:DP:GQ:PL    0/1:17,6:24:99:135,0,544
12    49951262    .    G    A    214.24    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=1.557;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=0.142;QD=8.24;ReadPosRankSum=0.368;SNPEFF_AMINO_ACID_CHANGE=P926;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49951137_49952077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257981    GT:AD:DP:GQ:PL    0/1:16,9:26:99:244,0,455
12    49952394    rs13906    C    T    62.36    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=18;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=5.7425;MQ=48.72;MQ0=0;MQRankSum=-0.387;QD=3.46;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257981    GT:AD:DP:GQ:PL    0/1:9,8:18:92.35:92,0,157
12    49952668    rs2303305    G    A    639.40    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=55;Dels=0.0;FS=2.305;HRun=1;HaplotypeScore=0.8941;MQ=59.16;MQ0=0;MQRankSum=2.911;QD=11.63;ReadPosRankSum=-0.586;SNPEFF_AMINO_ACID_CHANGE=L129;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49952626_49952753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCRS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551598    GT:AD:DP:GQ:PL    0/1:31,24:55:99:669,0,965
12    49960551    rs13066    C    A    280.23    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.187;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.521;MQ=59.03;MQ0=0;MQRankSum=0.637;QD=11.68;ReadPosRankSum=-1.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCRS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546244    GT:AD:DP:GQ:PL    0/1:13,11:24:99:310,0,345
12    49993678    rs52824916    C    T    632.22    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.302;DB;DP=41;Dels=0.0;FS=1.226;HRun=0;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;MQRankSum=-1.983;QD=15.42;ReadPosRankSum=-1.379;SNPEFF_AMINO_ACID_CHANGE=R195Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49993252_49994261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM186B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532262    GT:AD:DP:GQ:PL    0/1:18,23:41:99:662,0,597
12    49994257    .    T    G    68    QDFilter2    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.093;DP=60;Dels=0.0;FS=27.798;HRun=2;HaplotypeScore=1.2434;MQ=56.45;MQ0=0;MQRankSum=-2.069;QD=1.13;ReadPosRankSum=1.601;SNPEFF_AMINO_ACID_CHANGE=H299P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_49993252_49994917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM186B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544141    GT:AD:DP:GQ:PL    0/1:35,25:60:97.99:98,0,1012
12    50024926    rs7299609    C    T    139.40    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=13.94;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRPF40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551063    GT:AD:DP:GQ:PL    0/1:4,6:10:99:169,0,142
12    50026423    rs79252534    C    T    900.16    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.523;DB;DP=62;Dels=0.0;FS=7.604;HRun=0;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;MQRankSum=0.146;QD=14.52;ReadPosRankSum=-0.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRPF40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551063    GT:AD:DP:GQ:PL    0/1:26,35:62:99:930,0,667
12    50026566    rs80045104    C    T    1748.75    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=2.679;DB;DP=102;Dels=0.0;FS=2.641;HRun=0;HaplotypeScore=0.734;MQ=59.09;MQ0=0;MQRankSum=-0.003;QD=17.14;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRPF40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551063    GT:AD:DP:GQ:PL    0/1:44,58:102:99:1779,0,1326
12    50026779    .    GC    G    84.66    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DP=17;FS=0.0;HRun=11;HaplotypeScore=72.8613;IndelType=D;MQ=54.24;MQ0=0;MQRankSum=1.589;QD=4.98;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335154    GT:AD:DP:GQ:PL    0/1:10,6:17:39.71:124,0,40
12    50037745    rs35275181    G    A    717.76    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.409;DB;DP=56;Dels=0.0;FS=1.075;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.648;QD=12.82;ReadPosRankSum=0.513;SNPEFF_AMINO_ACID_CHANGE=E814;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50037644_50037787;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRPF40B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261897    GT:AD:DP:GQ:PL    0/1:29,27:56:99:748,0,836
12    50040811    rs3841320    A    AG    261.37    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.0;DB;DP=26;FS=2.006;HRun=4;HaplotypeScore=60.5752;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.346;QD=10.05;ReadPosRankSum=0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRPF40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261897    GT:AD:DP:GQ:PL    0/1:17,9:26:99:300,0,407
12    50043760    rs73112192    C    T    97.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=12.13;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293590    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,133
12    50136188    rs74590387    G    A    251.21    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.696;QD=19.32;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267115    GT:AD:DP:GQ:PL    0/1:5,8:13:99:281,0,159
12    50146173    rs11401668    C    CT    173.67    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=29;FS=0.0;HRun=14;HaplotypeScore=177.2663;IndelType=I;MQ=52.38;MQ0=0;MQRankSum=-0.951;QD=5.99;ReadPosRankSum=-0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267115    GT:AD:DP:GQ:PL    0/1:16,10:29:99:213,0,104
12    50146473    rs2603098    A    G    243.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548713    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
12    50152193    rs4563    G    A    1258.90    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.847;DB;DP=75;Dels=0.0;FS=3.131;HRun=0;HaplotypeScore=0.9789;MQ=59.75;MQ0=0;MQRankSum=-0.353;QD=16.79;ReadPosRankSum=0.667;SNPEFF_AMINO_ACID_CHANGE=T121;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50152166_50152263;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267115    GT:AD:DP:GQ:PL    0/1:35,40:75:99:1289,0,1012
12    50152601    rs113363190    C    CTTT    236.81    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=1.042;DB;DP=31;FS=0.0;HRun=16;HaplotypeScore=269.2537;IndelType=I;MQ=44.7;MQ0=0;MQRankSum=-0.964;QD=7.64;ReadPosRankSum=-1.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546796    GT:AD:DP:GQ:PL    0/1:17,6:31:99:276,0,167
12    50156888    rs112133089    CCTCA    C    202.52    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=46.6055;IndelType=D;MQ=50.18;MQ0=0;MQRankSum=-0.922;QD=22.5;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546796    GT:AD:DP:GQ:PL    0/1:4,5:9:99:242,0,125
12    50188434    rs2603105    T    A    109.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=12.21;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335999    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,172
12    50189807    rs2720298    C    A    352.84    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=57.97;MQ0=0;MQRankSum=0.837;QD=15.34;ReadPosRankSum=1.209;SNPEFF_AMINO_ACID_CHANGE=S608;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50189321_50191177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354423    GT:AD:DP:GQ:PL    0/1:10,13:23:99:383,0,263
12    50189834    rs2603104    T    G    251.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.051;DB;DP=22;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=1.5518;MQ=57.87;MQ0=0;MQRankSum=0.066;QD=11.44;ReadPosRankSum=-1.116;SNPEFF_AMINO_ACID_CHANGE=V599;SNPEFF_CODON_CHANGE=gtA/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50189321_50191177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354423    GT:AD:DP:GQ:PL    0/1:11,11:22:99:282,0,271
12    50192009    rs1075366    T    C    31.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477361    GT:AD:DP:GQ:PL    0/1:2,2:4:61.89:62,0,68
12    50197880    rs7953534    G    A    351.90    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-0.523;QD=15.3;ReadPosRankSum=-0.523;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480927    GT:AD:DP:GQ:PL    0/1:11,12:23:99:382,0,369
12    50232169    rs11169172    A    T    1244.16    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.037;DB;DP=76;Dels=0.0;FS=0.881;HRun=0;HaplotypeScore=2.2433;MQ=59.39;MQ0=0;MQRankSum=0.302;QD=16.37;ReadPosRankSum=1.118;SNPEFF_AMINO_ACID_CHANGE=S288R;SNPEFF_CODON_CHANGE=agT/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50231573_50232798;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCDIN3D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333924    GT:AD:DP:GQ:PL    0/1:37,38:76:99:1274,0,1088
12    50271372    rs1248263    G    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320634    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    50283465    rs643971    G    A    129.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547871    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
12    50290728    rs297935    A    G    1032.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=59.3;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320634    GT:AD:DP:GQ:PL    1/1:0,33:33:90.24:1066,90,0
12    50291735    rs297937    G    C    306.10    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=21;Dels=0.0;FS=2.702;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.178;QD=14.58;ReadPosRankSum=-1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320634    GT:AD:DP:GQ:PL    0/1:9,12:21:99:336,0,245
12    50344976    rs3741559    G    A    145.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.05;MQ0=0;MQRankSum=0.779;QD=12.09;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199280    GT:AD:DP:GQ:PL    0/1:6,6:12:99:175,0,173
12    50348078    rs426496    T    C    225.98    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.269;DB;DP=18;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=12.55;ReadPosRankSum=-0.927;SNPEFF_AMINO_ACID_CHANGE=S167;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50347938_50348102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000199280    GT:AD:DP:GQ:PL    0/1:7,11:18:99:256,0,236
12    50349090    rs410837    A    G    165.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550862    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
12    50349123    rs371777    C    A    94.49    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=9.45;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550862    GT:AD:DP:GQ:PL    0/1:6,4:10:99:124,0,180
12    50349143    rs403201    C    G    134.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.33;MQ0=0;MQRankSum=-0.935;QD=9.58;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550862    GT:AD:DP:GQ:PL    0/1:8,6:14:99:164,0,243
12    50356174    rs71889938    TGGG    T    176.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=57.2049;IndelType=D;MQ=53.63;MQ0=0;MQRankSum=-0.572;QD=14.71;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AQP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199280    GT:AD:DP:GQ:PL    0/1:4,6:12:22.40:215,0,22
12    50358544    rs296754    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293599    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    50368013    rs296748    C    T    1228.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=28.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RACGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548961    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1262,105,0
12    50386015    rs296737    C    T    3478.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.09;MQ0=0;QD=34.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RACGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547061    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3479,259,0
12    50393372    rs378943    G    T    1270.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=33.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RACGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546595    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1303,99,0
12    50398913    rs602772    A    G    359.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RACGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546764    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:393,33,0
12    50452708    rs653576    C    G    1460.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=S53;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50452534_50452911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228468    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1493,114,0
12    50471630    rs2272391    A    G    127.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.38;QD=10.59;ReadPosRankSum=-1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549792    GT:AD:DP:GQ:PL    0/1:7,5:12:99:157,0,247
12    50473433    rs844359    C    T    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549792    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
12    50473660    rs404751    A    G    3393.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.57;MQ0=0;QD=31.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549792    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3394,259,0
12    50482211    rs646782    T    C    312.13    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=3.677;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.486;QD=9.18;ReadPosRankSum=-1.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228468    GT:AD:DP:GQ:PL    0/1:19,15:34:99:342,0,685
12    50484013    rs73121544    G    A    1372.34    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.197;DB;DP=85;Dels=0.0;FS=4.609;HRun=0;HaplotypeScore=4.9874;MQ=59.24;MQ0=0;MQRankSum=0.502;QD=16.15;ReadPosRankSum=-1.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547247    GT:AD:DP:GQ:PL    0/1:33,52:85:99:1402,0,1040
12    50503269    rs836180    C    T    484.52    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.237;QD=14.68;ReadPosRankSum=0.492;SNPEFF_AMINO_ACID_CHANGE=I316;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50503206_50503869;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000548814    GT:AD:DP:GQ:PL    0/1:14,19:33:99:515,0,345
12    50529936    rs7136570    A    G    534.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.834;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.116;QD=19.07;ReadPosRankSum=1.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CERS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317551    GT:AD:DP:GQ:PL    0/1:12,16:28:99:564,0,412
12    50532188    rs3832812    G    GA    204.54    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=16;FS=0.0;HRun=9;HaplotypeScore=36.2424;IndelType=I;MQ=62.65;MQ0=0;MQRankSum=0.648;QD=12.78;ReadPosRankSum=-1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CERS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546514    GT:AD:DP:GQ:PL    0/1:7,9:16:99:244,0,106
12    50535710    rs7131794    A    G    69.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CERS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546514    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
12    50535955    rs10747571    C    T    295.02    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=13;Dels=0.0;FS=11.139;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.077;QD=22.69;ReadPosRankSum=-0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CERS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546514    GT:AD:DP:GQ:PL    0/1:4,9:13:89.46:325,0,89
12    50537060    rs2277355    C    G    537.52    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=4.273;DB;DP=43;Dels=0.0;FS=3.975;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.79;QD=12.5;ReadPosRankSum=1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CERS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549942    GT:AD:DP:GQ:PL    0/1:23,20:43:99:568,0,659
12    50537815    rs7302981    A    G    1101.74    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.652;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.624;QD=12.52;ReadPosRankSum=-0.289;SNPEFF_AMINO_ACID_CHANGE=C17R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50537735_50537840;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CERS5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422340    GT:AD:DP:GQ:PL    0/1:48,40:88:99:1132,0,1593
12    50599709    rs2302900    T    C    510.16    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.183;DB;DP=40;Dels=0.0;FS=1.511;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.578;QD=12.75;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341247    GT:AD:DP:GQ:PL    0/1:21,19:40:99:540,0,672
12    50599984    rs1362984    T    A    98.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=19.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341247    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:131,12,0
12    50616346    rs3812825    A    G    234.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.709;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9565;MQ=58.75;MQ0=0;MQRankSum=0.412;QD=15.66;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=T24;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50616306_50616430;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420992    GT:AD:DP:GQ:PL    0/1:6,9:15:99:265,0,209
12    50642314    rs3815671    A    G    335.90    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=24;Dels=0.0;FS=5.746;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=14.0;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341247    GT:AD:DP:GQ:PL    0/1:9,15:24:99:366,0,314
12    50727706    rs6580741    G    C    1409.33    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.155;DB;DP=104;Dels=0.0;FS=0.738;HRun=1;HaplotypeScore=0.5784;MQ=59.78;MQ0=0;MQRankSum=-0.92;QD=13.55;ReadPosRankSum=-0.577;SNPEFF_AMINO_ACID_CHANGE=H2228Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_50727694_50727886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM186A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327337    GT:AD:DP:GQ:PL    0/1:56,48:104:99:1439,0,1443
12    50803718    rs7304630    C    G    49.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293618    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    50821776    rs59730946    C    CT    33.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=15;FS=0.0;HRun=20;HaplotypeScore=188.8366;IndelType=I;MQ=43.5;MQ0=0;MQRankSum=0.736;QD=2.23;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293618    GT:AD:DP:GQ:PL    1/1:6,5:15:8.39:74,8,0
12    50824232    rs11612002    A    G    332.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.347;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.347;QD=16.61;ReadPosRankSum=-0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523389    GT:AD:DP:GQ:PL    0/1:8,12:20:99:362,0,235
12    50829263    rs113327207    T    TTATTC    4212.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=152.792;IndelType=I;MQ=51.73;MQ0=0;QD=89.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550522    GT:AD:DP:GQ:PL    1/1:2,43:47:99:4213,138,0
12    50855195    rs4351895    A    G    705.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293618    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:738,54,0
12    50856259    rs67429416    C    CA    125.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=17;FS=0.0;HRun=14;HaplotypeScore=173.897;IndelType=I;MQ=51.25;MQ0=0;MQRankSum=0.747;QD=7.38;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398464    GT:AD:DP:GQ:PL    1/1:7,10:17:4.69:165,5,0
12    50856613    rs10783362    T    G    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398464    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    50867998    .    AT    A    76.62    QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.596;DP=63;FS=0.0;HRun=15;HaplotypeScore=268.7846;IndelType=D;MQ=57.77;MQ0=0;MQRankSum=0.073;QD=1.22;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293618    GT:AD:DP:GQ:PL    0/1:47,12:63:99:116,0,531
12    50869121    rs4617660    C    T    298.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293618    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:332,27,0
12    51019633    rs66747566    TC    T    221.70    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=3.128;DB;DP=28;FS=0.0;HRun=9;HaplotypeScore=109.217;IndelType=D;MQ=59.13;MQ0=0;MQRankSum=0.256;QD=7.92;ReadPosRankSum=-0.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:15,13:28:99:261,0,370
12    51034721    rs2731436    C    T    496.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:529,45,0
12    51053873    rs79472721    CT    C    32.48    QDFilter2    AB=0.817;AC=1;AF=0.50;AN=2;BaseQRankSum=0.626;DB;DP=49;FS=7.862;HRun=15;HaplotypeScore=392.9203;IndelType=D;MQ=55.71;MQ0=0;MQRankSum=0.153;QD=0.66;ReadPosRankSum=-0.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:36,11:49:71.51:72,0,615
12    51076844    rs2731447    C    T    1297.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=36.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455310    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1331,99,0
12    51080364    rs74751916    C    T    378.68    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.502;DB;DP=29;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=13.06;ReadPosRankSum=0.764;SNPEFF_AMINO_ACID_CHANGE=R484W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51080356_51080465;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:14,15:29:99:409,0,459
12    51086931    rs2090852    T    C    35.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.1;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:3,2:5:65.50:65,0,105
12    51088979    rs34553264    T    G    513.69    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.331;QD=13.88;ReadPosRankSum=1.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:20,17:37:99:544,0,639
12    51089287    rs2139930    G    T    249.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.208;QD=15.62;ReadPosRankSum=-0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:8,8:16:99:280,0,281
12    51089365    rs2731444    C    G    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    51089572    rs2684890    G    A    1491.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1524,117,0
12    51089616    rs2684891    T    C    2255.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5042;MQ=59.68;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,72:73:99:2288,199,0
12    51089734    rs11169524    T    A    1326.60    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.025;DB;DP=99;Dels=0.0;FS=1.727;HRun=0;HaplotypeScore=2.5424;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=13.27;ReadPosRankSum=0.695;SNPEFF_AMINO_ACID_CHANGE=T639;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51089631_51089750;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:55,44:99:99:1357,0,1673
12    51090004    rs2684892    T    C    76.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
12    51092725    rs2684909    C    T    236.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:269,21,0
12    51108536    rs2700486    G    A    233.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:266,21,0
12    51121629    rs71441395    CA    C    440.29    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=3.009;DB;DP=49;FS=0.0;HRun=6;HaplotypeScore=141.3701;IndelType=D;MQ=60.22;MQ0=0;MQRankSum=0.332;QD=8.99;ReadPosRankSum=0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:30,19:49:99:479,0,854
12    51122572    rs71441396    T    TA    206.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=16.2194;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=25.86;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:2,6:8:47.68:246,0,48
12    51128832    rs3742062    A    G    315.26    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=0.285;QD=10.87;ReadPosRankSum=-0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:16,13:29:99:345,0,465
12    51135167    rs1975351    A    G    708.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:742,60,0
12    51135275    rs1866422    T    C    1130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=I1477;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51135199_51135322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    1/1:0,32:34:90.28:1163,90,0
12    51138687    rs2280503    A    C    147.59    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=14;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=10.54;ReadPosRankSum=0.312;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DIP2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301180    GT:AD:DP:GQ:PL    0/1:8,6:14:99:178,0,183
12    51174229    rs10876088    A    G    81.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262053    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
12    51203226    rs4986837    GT    G    1028.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=8;HaplotypeScore=220.1015;IndelType=D;MQ=53.33;MQ0=0;QD=23.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262053    GT:AD:DP:GQ:PL    1/1:4,40:44:99:1071,111,0
12    51203371    rs1129406    C    T    633.56    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.187;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.706;QD=17.6;ReadPosRankSum=0.321;SNPEFF_AMINO_ACID_CHANGE=Y109;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51203239_51203372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262053    GT:AD:DP:GQ:PL    0/1:15,21:36:99:664,0,473
12    51203376    rs4986838    T    C    520.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.65;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.0;MQ0=0;MQRankSum=-0.217;QD=14.87;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549612    GT:AD:DP:GQ:PL    0/1:15,20:35:99:550,0,480
12    51236802    rs10876100    T    C    234.08    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.63;DB;DP=27;Dels=0.0;FS=9.129;HRun=0;HaplotypeScore=2.8598;MQ=58.27;MQ0=0;MQRankSum=-0.027;QD=8.67;ReadPosRankSum=-0.684;SNPEFF_AMINO_ACID_CHANGE=Y19H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51236716_51236934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398458    GT:AD:DP:GQ:PL    0/1:15,12:27:99:264,0,496
12    51236931    rs829121    G    A    231.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=E62K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51236716_51236934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398458    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:265,21,0
12    51281432    rs3752667    G    A    669.53    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.271;QD=17.62;ReadPosRankSum=0.366;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398458    GT:AD:DP:GQ:PL    0/1:16,21:37:99:700,0,559
12    51319346    rs2359005    A    G    217.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332160    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:250,18,0
12    51382232    rs161044    T    C    906.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548554    GT:AD:DP:GQ:PL    1/1:0,27:27:72.20:939,72,0
12    51386530    rs111438318    G    A    143.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.05;FS=0.0;HRun=16;HaplotypeScore=1.7552;MQ=42.65;MQ0=0;QD=6.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546488    GT:AD:DP:GQ:PL    1/1:0,21:21:18.01:176,18,0
12    51386839    rs224569    C    G    200.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546488    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
12    51386868    rs224570    T    C    78.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546488    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
12    51386872    rs1632791    C    T    40.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546488    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:71,0,31
12    51390957    rs161045    A    T    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547732    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
12    51399050    rs224589    T    G    1451.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549193    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1484,111,0
12    51404467    rs427020    C    T    83.47    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.194;DB;DP=22;Dels=0.0;FS=5.746;HRun=0;HaplotypeScore=0.9469;MQ=57.87;MQ0=0;MQRankSum=0.157;QD=3.79;ReadPosRankSum=0.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC11A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548150    GT:AD:DP:GQ:PL    0/1:17,5:22:99:113,0,536
12    51442616    rs7972608    A    C    86.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262055    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
12    51442944    rs12379    G    A    290.05    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=8.06;ReadPosRankSum=-0.24;SNPEFF_AMINO_ACID_CHANGE=V28I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51442817_51442968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETMD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550929    GT:AD:DP:GQ:PL    0/1:25,11:36:99:320,0,656
12    51445661    rs4768959    T    C    133.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548390    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
12    51447506    rs7971308    A    G    905.86    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.54;MQ0=0;MQRankSum=0.655;QD=18.12;ReadPosRankSum=0.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LETMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546992    GT:AD:DP:GQ:PL    0/1:22,28:50:99:936,0,712
12    51453366    rs3190077    A    C    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228515    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:66,0,33
12    51458459    rs4768957    G    A    160.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=14;Dels=0.0;FS=11.553;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.935;QD=11.46;ReadPosRankSum=-1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548206    GT:AD:DP:GQ:PL    0/1:6,8:14:99:190,0,198
12    51458558    rs2029147    G    A    135.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548206    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
12    51461425    rs4768956    C    G    1287.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548206    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1320,99,0
12    51461793    rs2029146    G    A    460.45    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.315;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.276;QD=23.02;ReadPosRankSum=-1.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228515    GT:AD:DP:GQ:PL    0/1:4,16:20:99:490,0,119
12    51467510    rs67219310    GAA    G    70.25    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=29;FS=0.0;HRun=20;HaplotypeScore=283.1975;IndelType=D;MQ=47.3;MQ0=0;MQRankSum=1.333;QD=2.34;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546935    GT:AD:DP:GQ:PL    0/1:12,9:29:7.55:109,0,8
12    51467596    rs11169696    A    C    603.03    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.458;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=53.7;MQ0=0;MQRankSum=0.841;QD=10.58;ReadPosRankSum=0.649;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRNP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546935    GT:AD:DP:GQ:PL    0/1:29,28:57:99:633,0,730
12    51492509    rs2359189    G    A    200.96    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.628;DB;DP=17;Dels=0.0;FS=11.139;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=11.82;ReadPosRankSum=-2.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    0/1:9,8:17:99:231,0,233
12    51493260    rs35424372    CA    C    72.16    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=14;FS=0.0;HRun=15;HaplotypeScore=66.4076;IndelType=D;MQ=59.91;MQ0=0;MQRankSum=1.468;QD=5.15;ReadPosRankSum=-0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    0/1:6,8:14:99:111,0,117
12    51502791    rs7134695    C    T    611.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:645,51,0
12    51503137    rs11169708    A    G    93.85    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=6.26;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    0/1:11,4:15:99:124,0,382
12    51504799    rs7978782    T    C    1882.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.13;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1916,147,0
12    51504894    rs11308041    GT    G    120.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=12;HaplotypeScore=32.1593;IndelType=D;MQ=62.36;MQ0=0;QD=13.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    1/1:2,7:9:20.91:162,21,0
12    51511243    rs7953765    T    G    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
12    51512637    rs3839987    CT    C    247.74    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;FS=3.59;HRun=3;HaplotypeScore=36.9524;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=-1.376;QD=15.48;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    0/1:7,9:16:99:287,0,254
12    51565892    rs11169734    T    C    343.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.912;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.38;QD=16.35;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    0/1:9,12:21:99:373,0,309
12    51566350    rs11169735    C    T    167.14    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.248;QD=16.71;ReadPosRankSum=0.248;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_51566084_51566664;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFCP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257915    GT:AD:DP:GQ:PL    0/1:3,7:10:89.70:197,0,90
12    51585304    rs7487157    T    C    129.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=8.07;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547855    GT:AD:DP:GQ:PL    0/1:10,6:16:99:159,0,325
12    51585335    rs10783419    G    A    233.33    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DB;DP=22;Dels=0.0;FS=5.898;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=10.61;ReadPosRankSum=-1.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547855    GT:AD:DP:GQ:PL    0/1:13,8:22:99:263,0,422
12    51585599    rs10735831    T    G    126.17    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.029;DB;DP=24;Dels=0.0;FS=2.593;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.088;QD=5.26;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547855    GT:AD:DP:GQ:PL    0/1:14,10:24:99:156,0,470
12    51585601    rs10747606    C    T    119.95    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.786;DB;DP=24;Dels=0.0;FS=2.521;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.61;QD=5.0;ReadPosRankSum=-0.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547855    GT:AD:DP:GQ:PL    0/1:14,10:24:99:150,0,443
12    51593616    rs4077093    T    G    116.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=19.48;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_51593530_51593651;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU6F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389243    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:149,12,0
12    51636259    rs1049467    C    T    2110.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.7;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=L149;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51636114_51636600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000549555    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2144,169,0
12    51663215    rs2114876    T    C    452.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380103    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:486,39,0
12    51675208    rs3759175    C    T    225.97    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.332;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.22;MQ0=0;MQRankSum=-0.271;QD=14.12;ReadPosRankSum=1.464;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267012    GT:AD:DP:GQ:PL    0/1:6,10:16:99:256,0,161
12    51678334    rs3847855    C    T    1081.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=38.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267012    GT:AD:DP:GQ:PL    1/1:0,28:28:84.26:1114,84,0
12    51681846    rs4611251    C    T    1294.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267012    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1327,99,0
12    51681903    rs7954976    T    C    1596.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_AMINO_ACID_CHANGE=N497D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51681892_51681972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452142    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1629,120,0
12    51685831    rs3210837    T    C    784.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.39;MQ0=0;QD=31.39;SNPEFF_AMINO_ACID_CHANGE=E321;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51685375_51686128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452142    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:818,63,0
12    51686204    rs7306505    T    C    478.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267012    GT:AD:DP:GQ:PL    1/1:0,15:15:45.11:511,45,0
12    51686285    rs7135343    A    T    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267012    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    51693357    rs2288368    G    A    1279.77    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.622;DB;DP=87;Dels=0.0;FS=2.426;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.153;QD=14.71;ReadPosRankSum=0.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267012    GT:AD:DP:GQ:PL    0/1:45,42:87:99:1310,0,1370
12    51722311    rs7138439    C    T    863.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267012    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:896,66,0
12    51735022    rs934089    A    T    1375.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.58;MQ0=0;MQRankSum=0.472;QD=31.25;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293636    GT:AD:DP:GQ:PL    1/1:1,43:44:66.60:1408,67,0
12    51740388    rs17860281    C    A    3131.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=59.76;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293636    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3164,229,0
12    51748326    rs2288369    G    A    176.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=14.71;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356317    GT:AD:DP:GQ:PL    0/1:6,6:12:99:207,0,206
12    51748395    rs7971653    G    A    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356317    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
12    51752897    rs907347    G    A    2768.26    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=4.543;DB;DP=176;Dels=0.0;FS=1.261;HRun=1;HaplotypeScore=4.4045;MQ=59.87;MQ0=0;MQRankSum=0.617;QD=15.73;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356317    GT:AD:DP:GQ:PL    0/1:84,92:176:99:2798,0,2352
12    51754370    rs6580827    A    G    212.94    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=21.29;ReadPosRankSum=1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356317    GT:AD:DP:GQ:PL    0/1:3,7:10:84.40:243,0,84
12    51754629    rs2241545    A    G    347.49    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=18.29;ReadPosRankSum=-2.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356317    GT:AD:DP:GQ:PL    0/1:8,11:19:99:377,0,278
12    51759305    rs35597472    C    T    424.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.285;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9436;MQ=58.4;MQ0=0;MQRankSum=0.717;QD=10.35;ReadPosRankSum=0.149;SNPEFF_AMINO_ACID_CHANGE=V222;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_51759214_51759363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546163    GT:AD:DP:GQ:PL    0/1:20,20:41:99:454,0,634
12    51796904    rs907350    T    C    3716.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535225    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3716,274,0
12    51845695    rs1995690    C    T    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319957    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    51863643    rs4491281    T    C    930.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550211    GT:AD:DP:GQ:PL    1/1:0,28:28:81.21:964,81,0
12    51874153    rs7133321    G    A    800.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394856    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:833,66,0
12    51874156    rs12366428    G    T    803.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394856    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:836,63,0
12    51879826    rs10783445    G    T    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319957    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
12    52080965    rs4761829    C    T    1645.63    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.191;DB;DP=120;Dels=0.0;FS=5.754;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.547;QD=13.71;ReadPosRankSum=0.005;SNPEFF_AMINO_ACID_CHANGE=D105;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52080875_52081003;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357961    GT:AD:DP:GQ:PL    0/1:63,57:120:99:1676,0,2224
12    52094783    rs117012380    T    G    104.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=10.5;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354534    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,213
12    52099153    rs2291265    C    T    368.69    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.414;DB;DP=26;Dels=0.0;FS=2.366;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=14.18;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354534    GT:AD:DP:GQ:PL    0/1:14,12:26:99:399,0,473
12    52100566    rs10783474    G    A    490.93    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.774;QD=14.88;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354534    GT:AD:DP:GQ:PL    0/1:16,17:33:99:521,0,553
12    52156255    rs303767    A    C    2315.80    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=4.602;DB;DP=154;Dels=0.0;FS=1.449;HRun=0;HaplotypeScore=0.9933;MQ=59.85;MQ0=0;MQRankSum=0.358;QD=15.04;ReadPosRankSum=1.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354534    GT:AD:DP:GQ:PL    0/1:79,75:154:99:2346,0,2363
12    52159438    rs111379317    G    GT    484.61    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.901;DB;DP=59;FS=0.0;HRun=10;HaplotypeScore=211.5028;IndelType=I;MQ=59.36;MQ0=0;MQRankSum=0.641;QD=8.21;ReadPosRankSum=-2.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354534    GT:AD:DP:GQ:PL    0/1:35,23:59:99:524,0,573
12    52163248    rs303810    A    G    285.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.296;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.706;QD=15.87;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550891    GT:AD:DP:GQ:PL    0/1:9,9:18:99:316,0,295
12    52163322    rs303809    G    C    89.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550891    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
12    52163789    rs303808    G    A    221.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.154;QD=15.81;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550891    GT:AD:DP:GQ:PL    0/1:7,7:14:99:251,0,205
12    52174392    .    TACC    T    101.27    PASS    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=2.891;DP=26;FS=0.0;HRun=0;HaplotypeScore=245.1579;IndelType=D;MQ=50.9;MQ0=0;MQRankSum=-2.952;QD=3.9;ReadPosRankSum=3.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354534    GT:AD:DP:GQ:PL    0/1:21,5:26:99:140,0,1344
12    52184271    rs303815    T    C    873.50    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.701;DB;DP=90;Dels=0.0;FS=4.168;HRun=2;HaplotypeScore=0.5784;MQ=59.02;MQ0=0;MQRankSum=0.769;QD=9.71;ReadPosRankSum=-1.151;SNPEFF_AMINO_ACID_CHANGE=P1462;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52184182_52184286;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355133    GT:AD:DP:GQ:PL    0/1:57,33:90:99:903,0,1632
12    52200028    rs303828    C    A    1333.36    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.426;DB;DP=118;Dels=0.0;FS=3.566;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.162;QD=11.3;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354534    GT:AD:DP:GQ:PL    0/1:67,51:118:99:1363,0,2080
12    52200742    rs60637    C    A    1902.06    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DB;DP=147;Dels=0.0;FS=7.43;HRun=2;HaplotypeScore=4.3561;MQ=59.53;MQ0=0;MQRankSum=0.02;QD=12.94;ReadPosRankSum=-0.34;SNPEFF_AMINO_ACID_CHANGE=P1783;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52200066_52202297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SCN8A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545061    GT:AD:DP:GQ:PL    0/1:77,69:147:99:1932,0,2440
12    52215102    rs303819    T    G    39.72    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:59.79:70,0,60
12    52284233    rs706832    T    C    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301190    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
12    52403174    rs59795307    T    G    64.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=9.21;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRASP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293662    GT:AD:DP:GQ:PL    0/1:4,3:7:90.26:94,0,90
12    52404618    rs1298913    T    G    423.86    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.535;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.558;QD=9.21;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRASP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293662    GT:AD:DP:GQ:PL    0/1:27,19:46:99:454,0,875
12    52565020    rs12818603    C    G    184.90    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=14.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466011    GT:AD:DP:GQ:PL    0/1:5,8:13:99:215,0,171
12    52565322    rs3741737    G    T    709.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_AMINO_ACID_CHANGE=P418;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52562780_52565341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313234    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:742,57,0
12    52565922    rs12824949    A    G    271.08    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.758;QD=11.79;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313234    GT:AD:DP:GQ:PL    0/1:12,11:23:99:301,0,412
12    52574780    rs4762060    A    G    394.33    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=0.057;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.057;QD=23.2;ReadPosRankSum=0.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313234    GT:AD:DP:GQ:PL    0/1:4,13:17:82.06:424,0,82
12    52578951    rs7138032    T    C    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313234    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    52627215    rs7308888    A    G    734.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=28.25;SNPEFF_AMINO_ACID_CHANGE=S45;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52626898_52627404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331817    GT:AD:DP:GQ:PL    1/1:0,26:26:66.18:768,66,0
12    52627568    rs36053378    A    T    232.11    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=23.21;ReadPosRankSum=-0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546666    GT:AD:DP:GQ:PL    0/1:3,7:10:91.62:262,0,92
12    52631242    rs12313552    C    T    669.91    PASS    AB=0.325;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=40;Dels=0.0;FS=6.067;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=16.75;ReadPosRankSum=1.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546666    GT:AD:DP:GQ:PL    0/1:13,27:40:99:700,0,209
12    52631313    rs6580870    A    G    1238.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.25;MQ0=0;QD=28.81;SNPEFF_AMINO_ACID_CHANGE=H162R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52631290_52631353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422319    GT:AD:DP:GQ:PL    1/1:0,43:43:96.30:1272,96,0
12    52631394    rs10637094    C    CAT    1416.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=117.2079;IndelType=I;MQ=59.95;MQ0=0;QD=50.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546666    GT:AD:DP:GQ:PL    1/1:1,26:28:78.27:1459,78,0
12    52632573    rs7300317    A    G    503.26    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=41;Dels=0.0;FS=5.893;HRun=2;HaplotypeScore=1.811;MQ=57.13;MQ0=0;MQRankSum=0.059;QD=12.27;ReadPosRankSum=-1.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331817    GT:AD:DP:GQ:PL    0/1:18,23:41:99:533,0,578
12    52635241    rs2078201    G    C    657.97    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=4.767;DB;DP=48;Dels=0.0;FS=7.254;HRun=3;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.784;QD=13.71;ReadPosRankSum=-0.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331817    GT:AD:DP:GQ:PL    0/1:25,23:48:99:688,0,740
12    52635360    rs999665    G    A    1217.48    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.587;DB;DP=77;Dels=0.0;FS=4.482;HRun=0;HaplotypeScore=0.734;MQ=59.16;MQ0=0;MQRankSum=1.153;QD=15.81;ReadPosRankSum=0.713;SNPEFF_AMINO_ACID_CHANGE=A242;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52635256_52635420;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422319    GT:AD:DP:GQ:PL    0/1:34,43:77:99:1247,0,989
12    52635443    rs2243588    T    C    997.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547613    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1030,81,0
12    52635560    rs999666    A    T    37.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.49;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547613    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:67,0,33
12    52639302    rs2608009    G    C    1424.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6006;MQ=59.07;MQ0=0;QD=28.48;SNPEFF_AMINO_ACID_CHANGE=G340A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52639196_52639416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422319    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1457,117,0
12    52646941    rs3741722    C    G    287.47    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.306;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=57.73;MQ0=0;MQRankSum=0.34;QD=12.5;ReadPosRankSum=0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331817    GT:AD:DP:GQ:PL    0/1:11,12:23:99:317,0,340
12    52647197    rs11612499    A    T    920.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.4;MQ0=0;QD=35.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331817    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:954,72,0
12    52649887    rs2168762    T    C    5004.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;DB;DP=161;Dels=0.0;FS=3.854;HRun=0;HaplotypeScore=1.7886;MQ=59.16;MQ0=0;MQRankSum=0.307;QD=31.08;ReadPosRankSum=-1.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548657    GT:AD:DP:GQ:PL    1/1:1,160:161:99:5004,361,0
12    52649954    rs2242139    T    C    3708.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.23;MQ0=0;QD=32.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548657    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3708,307,0
12    52651821    rs1902765    G    T    973.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=38.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544024    GT:AD:DP:GQ:PL    1/1:0,25:25:75.24:1007,75,0
12    52679937    rs3660    C    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    52680008    rs3657    T    C    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    52681282    rs4761785    T    C    651.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.31;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423955    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:684,54,0
12    52681416    rs7300801    T    C    1141.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=39.61;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=Q330;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52681380_52681505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327741    GT:AD:DP:GQ:PL    1/1:0,35:35:96.28:1174,96,0
12    52681437    rs3187034    A    G    987.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.61;MQ0=0;QD=30.85;SNPEFF_AMINO_ACID_CHANGE=N323;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52681380_52681505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327741    GT:AD:DP:GQ:PL    1/1:0,31:32:93.21:1020,93,0
12    52681533    rs7300941    T    C    1012.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.9;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423955    GT:AD:DP:GQ:PL    1/1:0,32:32:78.25:1046,78,0
12    52681714    rs6580872    T    C    887.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.97;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423955    GT:AD:DP:GQ:PL    1/1:0,25:25:72.20:921,72,0
12    52681733    rs7954186    A    C    1453.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.58;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423955    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1487,108,0
12    52681822    rs138597671    A    T    1015.56    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=63;Dels=0.0;FS=11.906;HRun=1;HaplotypeScore=0.9987;MQ=52.94;MQ0=0;MQRankSum=0.368;QD=16.12;ReadPosRankSum=1.061;SNPEFF_AMINO_ACID_CHANGE=Y282*;SNPEFF_CODON_CHANGE=taT/taA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_12_52681768_52681932;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT81;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000327741    GT:AD:DP:GQ:PL    0/1:30,33:63:99:1046,0,943
12    52681925    rs6580873    A    C    1359.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.83;MQ0=1;QD=27.19;SNPEFF_AMINO_ACID_CHANGE=L248R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52681768_52681932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT81;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327741    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1393,126,0
12    52681968    rs6580874    T    C    1108.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.75;MQ0=3;QD=28.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423955    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1142,102,0
12    52685433    rs12809407    C    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=7.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423955    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:70,6,0
12    52685545    rs3809176    C    T    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423955    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    52699213    rs12832364    G    T    683.10    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.781;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;MQRankSum=1.645;QD=17.08;ReadPosRankSum=-0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293525    GT:AD:DP:GQ:PL    0/1:18,22:40:99:713,0,587
12    52699548    rs2032360    T    C    910.56    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.598;DB;DP=62;Dels=0.0;FS=1.057;HRun=1;HaplotypeScore=2.7253;MQ=50.84;MQ0=4;MQRankSum=-2.965;QD=14.69;ReadPosRankSum=2.365;SNPEFF_AMINO_ACID_CHANGE=A334;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52699447_52699572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293525    GT:AD:DP:GQ:PL    0/1:23,38:62:99:941,0,636
12    52699728    rs3741734    G    A    123.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=0.0;MQ=54.7;MQ0=0;MQRankSum=0.387;QD=11.19;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293525    GT:AD:DP:GQ:PL    0/1:6,5:11:99:153,0,206
12    52700100    rs11612715    C    A    494.50    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=31;Dels=0.0;FS=2.176;HRun=0;HaplotypeScore=0.0;MQ=50.55;MQ0=0;MQRankSum=-0.022;QD=15.95;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC021066.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293525    GT:AD:DP:GQ:PL    0/1:14,17:31:99:524,0,438
12    52708420    rs2857671    G    A    120.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_AMINO_ACID_CHANGE=H493Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52708085_52708602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
12    52708565    rs2857670    A    G    233.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=25.99;SNPEFF_AMINO_ACID_CHANGE=D444;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52708085_52708602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:267,21,0
12    52708978    rs3825221    T    C    3603.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.81;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3603,274,0
12    52709032    rs3741721    T    C    6137.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=59.64;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    1/1:0,181:181:99:6137,460,0
12    52709222    rs3741720    T    C    1075.10    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.349;QD=19.2;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:23,33:56:99:1105,0,763
12    52709880    rs2852468    A    G    460.52    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=38;Dels=0.0;FS=6.113;HRun=1;HaplotypeScore=0.0;MQ=51.6;MQ0=0;MQRankSum=-2.938;QD=12.12;ReadPosRankSum=-0.132;SNPEFF_AMINO_ACID_CHANGE=A353;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52709677_52709897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:18,20:38:99:491,0,614
12    52709883    rs2248473    T    C    392.33    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.637;DB;DP=35;Dels=0.0;FS=4.17;HRun=1;HaplotypeScore=0.0;MQ=52.35;MQ0=0;MQRankSum=-3.548;QD=11.21;ReadPosRankSum=-0.413;SNPEFF_AMINO_ACID_CHANGE=E352;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52709677_52709897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:17,18:35:99:422,0,595
12    52709981    rs2270266    C    A    100.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=2;HaplotypeScore=0.0;MQ=55.72;MQ0=0;MQRankSum=1.159;QD=11.14;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:5,4:9:99:130,0,169
12    52710102    rs56118466    C    T    129.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
12    52710198    rs55722266    C    T    345.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=26;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.359;QD=13.28;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:13,13:26:99:375,0,478
12    52710246    rs2270267    T    C    379.26    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.173;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.279;QD=9.25;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:25,16:41:99:409,0,784
12    52710309    rs2257286    G    A    659.23    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.446;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=58.98;MQ0=0;MQRankSum=0.594;QD=10.99;ReadPosRankSum=-0.162;SNPEFF_AMINO_ACID_CHANGE=N328;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52710252_52710377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:35,25:60:99:689,0,1042
12    52710715    rs2857669    G    A    858.57    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=2.981;DB;DP=78;Dels=0.0;FS=7.898;HRun=0;HaplotypeScore=0.7887;MQ=59.7;MQ0=0;MQRankSum=0.772;QD=11.01;ReadPosRankSum=0.391;SNPEFF_AMINO_ACID_CHANGE=A281;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52710643_52710807;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:46,32:78:99:889,0,1377
12    52710721    rs2852464    G    C    927.91    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=77;Dels=0.0;FS=6.202;HRun=1;HaplotypeScore=0.7887;MQ=59.7;MQ0=0;MQRankSum=0.326;QD=12.05;ReadPosRankSum=-0.16;SNPEFF_AMINO_ACID_CHANGE=I279M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52710643_52710807;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:45,32:77:99:958,0,1352
12    52710897    rs2852463    T    C    160.72    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.972;QD=8.46;ReadPosRankSum=-1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:7,12:19:99:191,0,234
12    52710898    rs2857668    G    A    199.97    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.042;QD=10.52;ReadPosRankSum=-1.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:7,12:19:99:230,0,242
12    52710913    rs2852462    A    G    256.39    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.318;QD=16.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:7,9:16:99:286,0,251
12    52711216    rs2277385    T    C    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    52711375    rs2277384    G    C    590.56    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.124;DB;DP=30;Dels=0.0;FS=9.553;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.354;QD=19.69;ReadPosRankSum=-0.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:11,19:30:99:621,0,298
12    52711416    rs2852460    A    G    535.78    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.489;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=5.6695;MQ=58.91;MQ0=0;MQRankSum=1.278;QD=8.93;ReadPosRankSum=0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:33,27:60:99:566,0,1030
12    52711450    rs2248619    T    C    2886.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7551;MQ=59.26;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2920,229,0
12    52711549    rs2857667    G    A    1444.44    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=1.094;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4943;MQ=59.64;MQ0=0;MQRankSum=-1.838;QD=12.56;ReadPosRankSum=-1.201;SNPEFF_AMINO_ACID_CHANGE=C222;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52711465_52711560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:58,57:115:99:1474,0,1632
12    52711624    rs2857666    C    T    965.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.68;MQ0=0;MQRankSum=1.264;QD=13.41;ReadPosRankSum=1.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:40,32:72:99:995,0,1296
12    52711747    rs146753414    C    A    640.15    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.209;DB;DP=48;Dels=0.0;FS=16.399;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.971;QD=13.34;ReadPosRankSum=0.148;SNPEFF_AMINO_ACID_CHANGE=E201*;SNPEFF_CODON_CHANGE=Gaa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_12_52711694_52711754;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:27,21:48:99:670,0,677
12    52711776    rs2852459    G    A    348.99    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=29;Dels=0.0;FS=6.085;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.288;QD=12.03;ReadPosRankSum=0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:17,12:29:99:379,0,592
12    52712746    rs998820    C    T    56.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=1.001;QD=6.24;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:6,3:9:86.18:86,0,198
12    52712813    rs998821    A    G    372.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.484;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.429;QD=15.53;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:12,12:24:99:403,0,336
12    52712817    rs3741717    G    A    262.56    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;MQRankSum=-0.899;QD=11.42;ReadPosRankSum=-0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:13,10:23:99:293,0,439
12    52712898    rs2187512    A    G    859.31    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.132;DB;DP=74;Dels=0.0;FS=1.153;HRun=0;HaplotypeScore=3.5364;MQ=58.74;MQ0=0;MQRankSum=-0.022;QD=11.61;ReadPosRankSum=1.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:35,39:74:99:889,0,1143
12    52712975    rs3741715    G    A    1768.07    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=135;Dels=0.0;FS=1.452;HRun=0;HaplotypeScore=2.6175;MQ=58.45;MQ0=0;MQRankSum=0.169;QD=13.1;ReadPosRankSum=-0.906;SNPEFF_AMINO_ACID_CHANGE=N186;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52712940_52713148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:70,65:135:99:1798,0,2061
12    52713199    rs67266462    CA    C    493.05    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.766;DB;DP=22;FS=0.0;HRun=3;HaplotypeScore=78.3115;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.693;QD=22.41;ReadPosRankSum=1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:6,16:22:99:532,0,153
12    52713218    rs10876276    C    T    89.37    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=3.11;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=4.97;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT83;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293670    GT:AD:DP:GQ:PL    0/1:13,5:18:99:119,0,371
12    52754515    rs7968466    T    C    424.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552537    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:458,39,0
12    52755097    rs1791627    A    T    292.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552537    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
12    52755341    rs2298796    T    C    403.27    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.716;DB;DP=26;Dels=0.0;FS=2.648;HRun=0;HaplotypeScore=1.6439;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=15.51;ReadPosRankSum=-0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552537    GT:AD:DP:GQ:PL    0/1:10,16:26:99:433,0,271
12    52756913    rs10876280    C    A    158.58    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.289;QD=10.57;ReadPosRankSum=-0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257901    GT:AD:DP:GQ:PL    0/1:8,7:15:99:189,0,268
12    52758994    rs2298795    G    C    171.42    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.799;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.78;MQ0=0;MQRankSum=-0.311;QD=9.02;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257901    GT:AD:DP:GQ:PL    0/1:9,10:19:99:201,0,284
12    52774235    rs951773    A    G    1432.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.15;SNPEFF_AMINO_ACID_CHANGE=C446R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52774147_52774367;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT84;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257951    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1466,117,0
12    52774516    rs56159057    C    T    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257951    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
12    52775431    rs2271084    A    G    274.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.165;QD=12.46;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257951    GT:AD:DP:GQ:PL    0/1:12,10:22:99:304,0,419
12    52776679    rs1732297    A    G    779.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257951    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:812,63,0
12    52777502    rs1945297    A    G    507.44    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.601;DB;DP=35;Dels=0.0;FS=3.11;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.314;QD=14.5;ReadPosRankSum=0.347;SNPEFF_AMINO_ACID_CHANGE=N209;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52777374_52777582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT84;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257951    GT:AD:DP:GQ:PL    0/1:18,17:35:99:537,0,571
12    52778772    rs1732303    C    T    3442.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8614;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257951    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3442,262,0
12    52788928    rs2658658    G    A    385.54    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=26;Dels=0.0;FS=4.222;HRun=0;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=0.082;QD=14.83;ReadPosRankSum=0.897;SNPEFF_AMINO_ACID_CHANGE=T458M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52787715_52788979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    0/1:12,14:26:99:416,0,344
12    52789509    rs1732264    T    C    562.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.387;QD=28.11;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    1/1:1,19:20:15.03:595,15,0
12    52789597    rs1732265    A    G    477.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.102;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9978;MQ=60.0;MQ0=0;MQRankSum=-0.919;QD=28.07;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    1/1:1,16:17:3.39:507,3,0
12    52789605    rs1732266    T    A    403.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9978;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=31.02;ReadPosRankSum=1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    1/1:1,12:13:6.62:435,7,0
12    52789691    rs34479712    A    C    192.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.78;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:225,18,0
12    52789693    rs11304728    GT    G    209.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=44.5491;IndelType=D;MQ=61.78;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:252,18,0
12    52789754    .    T    A    441.83    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.661;DP=23;Dels=0.0;FS=2.696;HRun=1;HaplotypeScore=0.0;MQ=60.47;MQ0=0;MQRankSum=-1.417;QD=19.21;ReadPosRankSum=-0.724;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    0/1:9,14:23:99:472,0,264
12    52790899    rs1791635    T    C    174.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
12    52790940    rs2249384    C    T    103.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.97;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257974    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,115
12    52818070    rs188462    A    G    217.86    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.157;QD=16.76;ReadPosRankSum=-1.312;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    0/1:4,9:13:99:248,0,126
12    52818504    rs298104    T    G    1718.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=34.37;SNPEFF_AMINO_ACID_CHANGE=S485R;SNPEFF_CODON_CHANGE=Agc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52817854_52818539;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1751,138,0
12    52821992    rs664354    A    G    798.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.64;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:831,66,0
12    52822258    rs401926    A    G    447.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_AMINO_ACID_CHANGE=C388;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52822040_52822260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:481,36,0
12    52824302    rs423949    C    A    2663.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2696,202,0
12    52824352    rs395623    G    A    1384.46    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=3.685;DB;DP=122;Dels=0.0;FS=9.24;HRun=0;HaplotypeScore=1.8237;MQ=60.0;MQ0=0;MQRankSum=0.778;QD=11.35;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=A336;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52824325_52824489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    0/1:67,55:122:99:1414,0,1923
12    52824562    rs443084    T    A    770.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    1/1:0,25:25:63.15:803,63,0
12    52825363    rs1798640    G    A    1229.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.087;QD=29.27;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=P278;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52825327_52825422;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    1/1:1,41:42:62.34:1263,62,0
12    52825591    .    T    C    111.41    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.28;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:141,0,26
12    52827534    rs67876    C    T    1485.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1518,114,0
12    52827608    rs2232387    C    T    590.24    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.69;MQ0=0;MQRankSum=-0.968;QD=7.98;ReadPosRankSum=-0.142;SNPEFF_AMINO_ACID_CHANGE=A161T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52827591_52828309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    0/1:48,26:74:99:620,0,1356
12    52827786    rs2232385    C    T    755.62    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.234;DB;DP=66;Dels=0.0;FS=2.134;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.393;QD=11.45;ReadPosRankSum=-0.407;SNPEFF_AMINO_ACID_CHANGE=G101;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52827591_52828309;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    0/1:37,29:66:99:786,0,1113
12    52827818    rs298109    T    C    1816.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.4676;MQ=59.3;MQ0=0;QD=27.52;SNPEFF_AMINO_ACID_CHANGE=R91G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52827591_52828309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT75;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252245    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1849,150,0
12    52843666    rs673602    G    A    904.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.967;DB;DP=72;Dels=0.0;FS=3.365;HRun=0;HaplotypeScore=0.8667;MQ=47.35;MQ0=3;MQRankSum=-3.496;QD=12.57;ReadPosRankSum=-0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252252    GT:AD:DP:GQ:PL    0/1:32,40:72:99:935,0,964
12    52843779    rs380379    T    C    69.71    QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.393;DB;DP=115;Dels=0.0;FS=13.459;HRun=4;HaplotypeScore=8.3764;MQ=46.32;MQ0=2;MQRankSum=-4.325;QD=0.61;ReadPosRankSum=-3.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252252    GT:AD:DP:GQ:PL    0/1:96,19:115:99:100,0,3036
12    52845435    rs80158424    C    T    170.82    MQFilter40;QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=1.193;DB;DP=111;Dels=0.0;FS=10.466;HRun=1;HaplotypeScore=0.0;MQ=27.8;MQ0=6;MQRankSum=-0.021;QD=1.54;ReadPosRankSum=1.243;SNPEFF_AMINO_ACID_CHANGE=S143N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52845323_52845910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252252    GT:AD:DP:GQ:PL    0/1:88,23:111:99:201,0,1977
12    52845574    rs144860693    C    T    46.48    MQFilter40;QDFilter2    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=11.33;MQ0=56;MQRankSum=-1.193;QD=0.38;ReadPosRankSum=1.007;SNPEFF_AMINO_ACID_CHANGE=G97R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52845323_52845910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252252    GT:AD:DP:GQ:PL    0/1:91,23:121:76.48:76,0,242
12    52845801    rs428894    T    C    227.93    MQFilter40    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.25;DB;DP=46;Dels=0.0;FS=1.706;HRun=0;HaplotypeScore=0.0;MQ=29.35;MQ0=8;MQRankSum=1.35;QD=4.95;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=N21S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52845323_52845910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252252    GT:AD:DP:GQ:PL    0/1:28,18:46:99:258,0,369
12    52845952    rs3809178    A    C    116.80    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.42;MQ0=0;MQRankSum=-0.922;QD=16.69;ReadPosRankSum=-0.198;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252252    GT:AD:DP:GQ:PL    0/1:2,5:7:61.59:147,0,62
12    52862770    rs1053796    T    C    336.72    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.254;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=-1.944;QD=25.9;ReadPosRankSum=0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553087    GT:AD:DP:GQ:PL    0/1:3,10:13:85.62:367,0,86
12    52863091    rs35481773    G    T    366.48    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.69;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;MQRankSum=0.019;QD=11.11;ReadPosRankSum=0.399;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553087    GT:AD:DP:GQ:PL    0/1:18,15:33:99:396,0,566
12    52863160    rs34838670    G    A    295.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.695;DB;DP=36;Dels=0.0;FS=1.356;HRun=1;HaplotypeScore=1.6006;MQ=57.2;MQ0=0;MQRankSum=-1.258;QD=8.22;ReadPosRankSum=-1.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553087    GT:AD:DP:GQ:PL    0/1:24,12:36:99:326,0,749
12    52863564    rs3894847    C    T    1284.03    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.305;DB;DP=87;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.18;MQ0=3;MQRankSum=-2.183;QD=14.76;ReadPosRankSum=1.791;SNPEFF_AMINO_ACID_CHANGE=K423;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52863454_52863674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411979    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1314,0,1198
12    52863621    rs382367    T    G    762.18    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=1.05;DB;DP=57;Dels=0.0;FS=4.743;HRun=1;HaplotypeScore=1.9468;MQ=51.54;MQ0=3;MQRankSum=-1.516;QD=13.37;ReadPosRankSum=-0.099;SNPEFF_AMINO_ACID_CHANGE=A404;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52863454_52863674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411979    GT:AD:DP:GQ:PL    0/1:23,33:57:99:792,0,758
12    52864775    rs3847831    T    C    233.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=15.56;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:6,9:15:99:263,0,195
12    52865443    rs7487256    T    C    636.88    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=98;Dels=0.0;FS=14.95;HRun=1;HaplotypeScore=0.9159;MQ=40.09;MQ0=10;MQRankSum=-1.817;QD=6.5;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:63,35:98:99:667,0,1587
12    52865837    rs10876294    A    G    537.37    MQFilter40    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=44;Dels=0.0;FS=11.236;HRun=0;HaplotypeScore=0.0;MQ=38.43;MQ0=5;MQRankSum=1.564;QD=12.21;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:21,23:44:99:567,0,451
12    52866060    rs11608915    C    T    447.37    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=3.78;DB;DP=47;Dels=0.0;FS=5.517;HRun=0;HaplotypeScore=0.0;MQ=48.57;MQ0=1;MQRankSum=-1.046;QD=9.52;ReadPosRankSum=-1.551;SNPEFF_AMINO_ACID_CHANGE=R167Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52865850_52866064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411979    GT:AD:DP:GQ:PL    0/1:28,19:47:99:477,0,732
12    52866145    rs4761899    T    G    189.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=48.42;MQ0=0;MQRankSum=0.101;QD=14.56;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:6,7:13:99:219,0,204
12    52866748    rs12426284    G    C    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.8;MQ0=0;MQRankSum=0.358;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,100
12    52866765    rs12426285    G    A    75.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.59;MQ0=0;MQRankSum=0.55;QD=10.77;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:4,3:7:88.43:105,0,88
12    52866769    rs12426265    C    T    70.13    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.59;MQ0=0;MQRankSum=-0.55;QD=10.02;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,132
12    52866859    rs145677872    ACT    A    443.45    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=3.295;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=125.136;IndelType=D;MQ=37.26;MQ0=0;MQRankSum=-1.774;QD=18.48;ReadPosRankSum=-1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:11,13:23:99:482,0,369
12    52866930    rs149746641    T    C    901.62    MQFilter40    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.781;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=36.73;MQ0=3;MQRankSum=-1.934;QD=14.78;ReadPosRankSum=-0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:25,36:61:99:932,0,622
12    52867094    rs151117600    C    T    165.75    MQFilter40    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=3.223;DB;DP=63;Dels=0.0;FS=10.533;HRun=1;HaplotypeScore=0.9867;MQ=24.46;MQ0=14;MQRankSum=1.737;QD=2.63;ReadPosRankSum=-0.563;SNPEFF_AMINO_ACID_CHANGE=S128N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52866982_52867435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411979    GT:AD:DP:GQ:PL    0/1:52,11:63:99:196,0,913
12    52867105    rs1053684    G    A    183.55    MQFilter40    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=2.189;DB;DP=64;Dels=0.0;FS=10.763;HRun=0;HaplotypeScore=0.9867;MQ=23.42;MQ0=18;MQRankSum=2.858;QD=2.87;ReadPosRankSum=1.004;SNPEFF_AMINO_ACID_CHANGE=T124;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52866982_52867435;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411979    GT:AD:DP:GQ:PL    0/1:53,11:64:99:214,0,787
12    52867625    rs4761901    G    T    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.03;MQ0=0;MQRankSum=1.231;QD=7.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252250    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,107
12    52881428    rs28667515    A    C    200.59    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.82;MQ0=0;MQRankSum=-1.099;QD=13.37;ReadPosRankSum=-1.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548735    GT:AD:DP:GQ:PL    0/1:8,7:15:99:231,0,273
12    52881910    rs139246747    G    A    339.61    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.88;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.3;MQ0=0;MQRankSum=-0.399;QD=9.99;ReadPosRankSum=-0.665;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548735    GT:AD:DP:GQ:PL    0/1:19,15:34:99:370,0,661
12    52882094    rs12581781    T    G    664.89    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.723;DB;DP=61;Dels=0.0;FS=10.029;HRun=1;HaplotypeScore=0.9665;MQ=58.55;MQ0=0;MQRankSum=0.609;QD=10.9;ReadPosRankSum=-0.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548735    GT:AD:DP:GQ:PL    0/1:36,25:61:99:695,0,1070
12    52882410    rs144849815    T    TGAA    627.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=60.3545;IndelType=I;MQ=48.77;MQ0=0;QD=44.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548735    GT:AD:DP:GQ:PL    1/1:1,13:12:30.10:670,30,0
12    52883477    rs188464    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548735    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    52883510    rs298117    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548735    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    52883888    rs4761912    C    T    233.38    MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=45;Dels=0.0;FS=3.64;HRun=0;HaplotypeScore=0.0;MQ=28.23;MQ0=10;MQRankSum=-0.354;QD=5.19;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549754    GT:AD:DP:GQ:PL    0/1:29,16:45:99:263,0,507
12    52883947    rs4761913    C    A    106.54    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.68;MQ0=2;MQRankSum=-1.733;QD=5.33;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549754    GT:AD:DP:GQ:PL    0/1:14,6:20:99:137,0,391
12    52884283    rs298119    A    G    941.40    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.687;DB;DP=61;Dels=0.0;FS=3.053;HRun=0;HaplotypeScore=0.5784;MQ=57.58;MQ0=0;MQRankSum=-0.673;QD=15.43;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330722    GT:AD:DP:GQ:PL    0/1:28,33:61:99:971,0,938
12    52884557    rs298120    T    C    846.72    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.677;DB;DP=46;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=0.0;MQ=54.45;MQ0=0;MQRankSum=-1.294;QD=18.41;ReadPosRankSum=-1.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330722    GT:AD:DP:GQ:PL    0/1:18,28:46:99:877,0,584
12    52884735    rs12578949    A    G    786.52    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.475;DB;DP=58;Dels=0.0;FS=1.133;HRun=0;HaplotypeScore=0.0;MQ=45.6;MQ0=4;MQRankSum=-1.735;QD=13.56;ReadPosRankSum=0.399;SNPEFF_AMINO_ACID_CHANGE=D229;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52884642_52884737;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452121    GT:AD:DP:GQ:PL    0/1:28,30:58:99:817,0,608
12    52886343    rs139159563    C    T    681.19    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.567;DB;DP=43;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.239;QD=15.84;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330722    GT:AD:DP:GQ:PL    0/1:20,23:43:99:711,0,677
12    52886371    rs17099719    G    A    982.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.859;DB;DP=74;Dels=0.0;FS=1.088;HRun=2;HaplotypeScore=1.8055;MQ=58.74;MQ0=0;MQRankSum=1.081;QD=13.27;ReadPosRankSum=-0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330722    GT:AD:DP:GQ:PL    0/1:37,37:74:99:1012,0,1206
12    52886490    rs711317    A    G    1294.25    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.338;DB;DP=111;Dels=0.0;FS=4.993;HRun=1;HaplotypeScore=0.734;MQ=55.12;MQ0=1;MQRankSum=-2.555;QD=11.66;ReadPosRankSum=-0.858;SNPEFF_AMINO_ACID_CHANGE=A117;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52886433_52886804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452121    GT:AD:DP:GQ:PL    0/1:58,53:111:99:1324,0,1738
12    52886911    rs17845411    T    C    318.47    MQFilter40    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.033;DB;DP=49;Dels=0.0;FS=1.198;HRun=0;HaplotypeScore=0.9469;MQ=39.96;MQ0=0;MQRankSum=-0.948;QD=6.5;ReadPosRankSum=-0.181;SNPEFF_AMINO_ACID_CHANGE=N21S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52886433_52887041;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT6A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330722    GT:AD:DP:GQ:PL    0/1:31,18:49:99:348,0,738
12    52908872    rs11549949    C    T    51.05    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=15;Dels=0.0;FS=5.611;HRun=1;HaplotypeScore=0.734;MQ=56.85;MQ0=0;MQRankSum=-0.196;QD=3.4;ReadPosRankSum=-0.196;SNPEFF_AMINO_ACID_CHANGE=G508S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52908361_52909024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456000    GT:AD:DP:GQ:PL    0/1:11,4:15:81.04:81,0,322
12    52908917    rs11549950    T    C    93.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=9.38;ReadPosRankSum=-1.133;SNPEFF_AMINO_ACID_CHANGE=S493G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52908361_52909024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456000    GT:AD:DP:GQ:PL    0/1:6,4:10:99:124,0,204
12    52909061    rs28694819    T    A    135.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=15;Dels=0.0;FS=6.008;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=9.04;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:10,5:15:99:166,0,298
12    52909169    rs3847840    A    G    82.14    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.54;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:112,0,25
12    52909419    rs1799902    T    C    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
12    52910687    rs1799849    G    T    366.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.205;QD=13.58;ReadPosRankSum=-1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:13,13:26:99:397,0,419
12    52910712    rs1799848    A    G    316.92    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=26;Dels=0.0;FS=1.598;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.882;QD=12.19;ReadPosRankSum=1.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:15,11:26:99:347,0,519
12    52910851    rs60815939    A    G    869.51    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.174;DB;DP=82;Dels=0.0;FS=4.789;HRun=0;HaplotypeScore=1.4538;MQ=59.72;MQ0=0;MQRankSum=1.05;QD=10.6;ReadPosRankSum=0.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:45,37:82:99:899,0,1497
12    52911279    rs4761923    A    G    308.25    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.687;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6545;MQ=59.39;MQ0=0;MQRankSum=0.572;QD=8.11;ReadPosRankSum=1.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:22,16:38:99:338,0,782
12    52911401    rs4761924    T    G    1064.54    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.152;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5998;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=9.77;ReadPosRankSum=0.753;SNPEFF_AMINO_ACID_CHANGE=T320;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52911374_52911538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456000    GT:AD:DP:GQ:PL    0/1:64,45:109:99:1095,0,1783
12    52912768    rs1132948    C    T    1508.90    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.805;DB;DP=111;Dels=0.0;FS=0.724;HRun=1;HaplotypeScore=0.9998;MQ=57.18;MQ0=0;MQRankSum=1.407;QD=13.59;ReadPosRankSum=0.994;SNPEFF_AMINO_ACID_CHANGE=L134;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52912730_52912944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000549420    GT:AD:DP:GQ:PL    0/1:57,54:111:99:1539,0,1645
12    52912870    rs17852231    A    G    1207.31    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=102;Dels=0.0;FS=1.871;HRun=1;HaplotypeScore=3.2924;MQ=48.39;MQ0=2;MQRankSum=-1.375;QD=11.84;ReadPosRankSum=1.19;SNPEFF_AMINO_ACID_CHANGE=T100;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52912730_52912944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000549420    GT:AD:DP:GQ:PL    0/1:53,49:102:99:1237,0,1433
12    52912959    rs60314569    G    A    550.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.93;MQ0=0;MQRankSum=0.117;QD=13.11;ReadPosRankSum=-0.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:21,21:42:99:581,0,608
12    52913029    rs607860    C    T    261.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.78;MQ0=0;MQRankSum=0.825;QD=21.76;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546577    GT:AD:DP:GQ:PL    0/1:4,8:12:94.72:291,0,95
12    52913668    rs11170164    C    T    896.29    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.045;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.98;MQ0=0;MQRankSum=0.7;QD=13.18;ReadPosRankSum=0.599;SNPEFF_AMINO_ACID_CHANGE=G103E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52913526_52913799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456000    GT:AD:DP:GQ:PL    0/1:38,30:68:99:926,0,1173
12    52914211    rs12821071    T    C    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.42;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456000    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
12    52938364    rs2292507    T    C    1405.09    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=1.915;DB;DP=125;Dels=0.0;FS=0.729;HRun=3;HaplotypeScore=4.3624;MQ=58.13;MQ0=0;MQRankSum=-1.909;QD=11.24;ReadPosRankSum=0.54;SNPEFF_AMINO_ACID_CHANGE=L508;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52937693_52938527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:63,62:125:99:1435,0,1715
12    52938497    rs10783518    A    C    198.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.429;DB;DP=24;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=2.8472;MQ=52.87;MQ0=0;MQRankSum=-1.184;QD=8.27;ReadPosRankSum=-0.939;SNPEFF_AMINO_ACID_CHANGE=V464G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52937693_52938527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:14,10:24:99:228,0,276
12    52938535    rs10783519    A    G    76.09    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=18;Dels=0.0;FS=3.039;HRun=2;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-0.453;QD=4.23;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:11,7:18:99:106,0,354
12    52939407    rs10580903    AGAG    A    414.60    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=4.563;DB;DP=34;FS=5.748;HRun=0;HaplotypeScore=138.7212;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=-0.992;QD=12.19;ReadPosRankSum=0.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:23,11:34:99:454,0,1256
12    52939994    rs11170171    T    C    257.26    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.772;QD=17.15;ReadPosRankSum=-0.772;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:7,8:15:99:287,0,245
12    52941470    rs188039455    G    A    343.44    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.476;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.13;MQ0=0;MQRankSum=1.068;QD=13.74;ReadPosRankSum=0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:14,11:25:99:373,0,425
12    52941529    rs4761929    T    C    539.21    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.251;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.24;MQ0=0;MQRankSum=-1.018;QD=8.84;ReadPosRankSum=0.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:36,25:61:99:569,0,1268
12    52941784    rs35065066    CAG    C    464.70    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.653;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=106.24;IndelType=D;MQ=60.31;MQ0=0;MQRankSum=0.421;QD=13.28;ReadPosRankSum=-0.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:21,14:35:99:504,0,1072
12    52942235    rs12308719    G    T    183.01    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=22.88;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:1,7:8:17.51:213,0,18
12    52942301    rs10876309    C    T    147.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=16.44;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:3,6:9:64.35:178,0,64
12    52942694    rs3803085    C    T    54.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=6.77;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:5,3:8:84.18:84,0,182
12    52942998    rs635206    C    T    1070.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    1/1:0,33:33:90.23:1103,90,0
12    52943144    rs4761930    G    A    764.46    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DB;DP=51;Dels=0.0;FS=8.622;HRun=2;HaplotypeScore=1.445;MQ=59.63;MQ0=0;MQRankSum=-0.225;QD=14.99;ReadPosRankSum=-1.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:22,29:51:99:794,0,731
12    52944060    rs10747643    T    C    550.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.61;DB;DP=35;Dels=0.0;FS=2.96;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.128;QD=15.71;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:14,21:35:99:580,0,486
12    52946346    rs681387    C    G    396.19    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.723;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.877;QD=15.24;ReadPosRankSum=0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:12,14:26:99:426,0,426
12    52946498    rs665470    C    T    1190.72    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.568;DB;DP=73;Dels=0.0;FS=4.67;HRun=1;HaplotypeScore=0.6651;MQ=59.37;MQ0=0;MQRankSum=-0.127;QD=16.31;ReadPosRankSum=1.506;SNPEFF_AMINO_ACID_CHANGE=E122K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52946421_52946931;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1221,0,1102
12    52946543    rs665522    C    T    1062.99    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.08;DB;DP=80;Dels=0.0;FS=1.943;HRun=0;HaplotypeScore=1.7297;MQ=59.71;MQ0=0;MQRankSum=0.867;QD=13.29;ReadPosRankSum=-0.897;SNPEFF_AMINO_ACID_CHANGE=V107I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52946421_52946931;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:42,37:80:99:1093,0,1298
12    52946890    rs628819    A    G    947.52    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=46;Dels=0.0;FS=2.407;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.442;QD=20.6;ReadPosRankSum=-0.513;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_12_52946421_52946931;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267119    GT:AD:DP:GQ:PL    0/1:14,32:46:99:978,0,413
12    52960884    rs75004274    C    T    315.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.282;QD=12.14;ReadPosRankSum=0.974;SNPEFF_AMINO_ACID_CHANGE=A487T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52959603_52960952;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    0/1:13,13:26:99:346,0,378
12    52963942    rs11448668    A    AG    198.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=9.0687;IndelType=I;MQ=60.0;MQ0=0;QD=39.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
12    52964417    rs657102    A    G    680.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:713,57,0
12    52964718    rs597048    G    A    65.90    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.517;QD=8.24;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    0/1:5,3:8:95.89:96,0,176
12    52965173    rs670741    T    G    1578.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=33.59;SNPEFF_AMINO_ACID_CHANGE=E271D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52965143_52965238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1612,120,0
12    52965722    rs673363    T    C    3534.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-1.609;QD=31.0;ReadPosRankSum=-0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    1/1:1,112:113:99:3534,228,0
12    52965761    rs673449    C    T    3802.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.804;DB;DP=125;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6777;MQ=59.26;MQ0=0;MQRankSum=-0.353;QD=30.42;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=T238;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52965728_52965788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    1/1:2,123:125:99:3802,238,0
12    52965782    rs673476    T    C    3718.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.52;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.3755;MQ=59.27;MQ0=0;MQRankSum=1.075;QD=29.28;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=E231;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52965728_52965788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    1/1:2,125:127:99:3719,238,0
12    52966047    rs671629    C    T    127.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
12    52966137    rs685720    T    A    557.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.6651;MQ=58.45;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:591,45,0
12    52966144    rs34211466    TC    T    346.18    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=19;FS=0.0;HRun=5;HaplotypeScore=119.1527;IndelType=D;MQ=59.36;MQ0=0;MQRankSum=1.096;QD=18.22;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    0/1:6,13:19:99:385,0,181
12    52966390    rs11170176    A    T    1023.14    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.77;DB;DP=70;Dels=0.0;FS=3.634;HRun=0;HaplotypeScore=0.9665;MQ=59.67;MQ0=0;MQRankSum=-0.311;QD=14.62;ReadPosRankSum=0.464;SNPEFF_AMINO_ACID_CHANGE=L178Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52966237_52966451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305620    GT:AD:DP:GQ:PL    0/1:36,34:70:99:1053,0,1095
12    52979741    rs2292502    G    T    1576.68    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=122;Dels=0.0;FS=3.511;HRun=1;HaplotypeScore=4.4611;MQ=59.26;MQ0=0;MQRankSum=-1.317;QD=12.92;ReadPosRankSum=-0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398066    GT:AD:DP:GQ:PL    0/1:67,55:122:99:1607,0,1912
12    52980078    rs17116392    T    C    333.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293745    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:367,27,0
12    52980902    rs71443262    T    G    84.33    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.551;QD=5.62;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293745    GT:AD:DP:GQ:PL    0/1:10,5:15:99:114,0,292
12    52981442    rs11170183    C    A    1454.90    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.963;DB;DP=102;Dels=0.0;FS=2.767;HRun=0;HaplotypeScore=1.4725;MQ=59.63;MQ0=0;MQRankSum=0.165;QD=14.26;ReadPosRankSum=0.774;SNPEFF_AMINO_ACID_CHANGE=R240L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52981415_52981635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398066    GT:AD:DP:GQ:PL    0/1:52,50:102:99:1485,0,1394
12    52984620    rs12818575    C    T    481.24    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=1.254;DB;DP=43;Dels=0.0;FS=2.881;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.767;QD=11.19;ReadPosRankSum=0.524;SNPEFF_AMINO_ACID_CHANGE=Q175;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52984620_52984745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398066    GT:AD:DP:GQ:PL    0/1:23,20:43:99:511,0,671
12    52985293    rs12824366    A    G    916.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=I118;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52985248_52985412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398066    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:950,75,0
12    52986132    rs617820    T    A    483.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293745    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:516,39,0
12    52986187    rs12833456    T    C    999.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_AMINO_ACID_CHANGE=Y264C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52986180_52986275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293745    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1032,75,0
12    52992812    rs11170187    T    C    3340.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=N171D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52992682_52992896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293745    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3341,256,0
12    52994636    rs75624316    C    A    71.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=8.91;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293745    GT:AD:DP:GQ:PL    0/1:4,4:8:99:101,0,144
12    52994739    rs7980333    C    T    419.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.539;DB;DP=30;Dels=0.0;FS=2.235;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.373;QD=13.98;ReadPosRankSum=0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293745    GT:AD:DP:GQ:PL    0/1:15,15:30:99:449,0,478
12    52994955    rs61747192    G    A    571.46    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.606;DB;DP=38;Dels=0.0;FS=4.322;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.665;QD=15.04;ReadPosRankSum=-0.931;SNPEFF_AMINO_ACID_CHANGE=P94;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_52994811_52995322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT72;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293745    GT:AD:DP:GQ:PL    0/1:16,22:38:99:601,0,511
12    53002956    rs591636    T    C    834.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305748    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:868,66,0
12    53003562    rs11170195    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305748    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    53003846    rs138238856    CTGTT    C    879.60    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.399;DB;DP=52;FS=2.721;HRun=0;HaplotypeScore=289.1616;IndelType=D;MQ=56.17;MQ0=0;MQRankSum=1.267;QD=16.92;ReadPosRankSum=0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305748    GT:AD:DP:GQ:PL    0/1:28,21:52:99:919,0,353
12    53004654    rs595624    C    G    329.94    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.645;DB;DP=25;Dels=0.0;FS=6.214;HRun=0;HaplotypeScore=0.7887;MQ=59.07;MQ0=0;MQRankSum=0.837;QD=13.2;ReadPosRankSum=1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305748    GT:AD:DP:GQ:PL    0/1:12,13:25:99:360,0,421
12    53004694    rs9739031    T    C    94.73    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=7.89;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305748    GT:AD:DP:GQ:PL    0/1:7,5:12:99:125,0,239
12    53011955    rs61736102    G    A    1307.22    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.411;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.7;MQ0=0;MQRankSum=0.57;QD=16.76;ReadPosRankSum=-0.841;SNPEFF_AMINO_ACID_CHANGE=N118;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53011862_53012343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT73;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305748    GT:AD:DP:GQ:PL    0/1:37,41:78:99:1337,0,1168
12    53040411    rs2232559    T    C    314.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.579;QD=15.73;ReadPosRankSum=-2.353;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547106    GT:AD:DP:GQ:PL    0/1:8,12:20:99:345,0,275
12    53043636    rs632952    G    T    203.84    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.996;DB;DP=19;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.992;QD=10.73;ReadPosRankSum=1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309680    GT:AD:DP:GQ:PL    0/1:12,7:19:99:234,0,364
12    53044267    rs638043    C    T    1103.74    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.277;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9293;MQ=57.42;MQ0=0;MQRankSum=-0.319;QD=12.13;ReadPosRankSum=0.447;SNPEFF_AMINO_ACID_CHANGE=G219D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53044123_53044337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309680    GT:AD:DP:GQ:PL    0/1:48,42:91:99:1134,0,1325
12    53044336    .    A    C    58.86    QDFilter2    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.55;DP=47;Dels=0.0;FS=10.71;HRun=2;HaplotypeScore=2.439;MQ=51.01;MQ0=0;MQRankSum=-2.504;QD=1.25;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=V196G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53044123_53044337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309680    GT:AD:DP:GQ:PL    0/1:17,29:47:88.85:89,0,363
12    53044427    rs638587    T    C    181.18    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=15.1;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309680    GT:AD:DP:GQ:PL    0/1:5,7:12:99:211,0,167
12    53045777    rs11835758    G    A    116.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=56.75;MQ0=0;MQRankSum=0.919;QD=7.26;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=G50;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53045342_53045948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309680    GT:AD:DP:GQ:PL    0/1:10,5:16:99:146,0,310
12    53069014    rs14024    T    C    1834.75    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.014;DB;DP=130;Dels=0.0;FS=0.691;HRun=1;HaplotypeScore=2.3204;MQ=59.11;MQ0=0;MQRankSum=0.446;QD=14.11;ReadPosRankSum=0.895;SNPEFF_AMINO_ACID_CHANGE=K633R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53068520_53069401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252244    GT:AD:DP:GQ:PL    0/1:62,68:130:99:1865,0,1735
12    53070121    rs698170    T    G    429.38    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.984;DB;DP=34;Dels=0.0;FS=10.736;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.673;QD=12.63;ReadPosRankSum=-0.121;SNPEFF_AMINO_ACID_CHANGE=T471;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53070059_53070279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252244    GT:AD:DP:GQ:PL    0/1:18,16:34:99:459,0,576
12    53070688    rs597685    G    A    117.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.62;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252244    GT:AD:DP:GQ:PL    0/1:2,4:6:62.49:148,0,62
12    53071338    rs626480    A    G    1191.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=58.32;MQ0=0;QD=30.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252244    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1224,99,0
12    53084872    rs643027    C    T    517.95    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=57.8;MQ0=0;MQRankSum=-1.273;QD=16.19;ReadPosRankSum=0.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550823    GT:AD:DP:GQ:PL    0/1:14,18:32:99:548,0,369
12    53085089    rs636127    T    C    50.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=5.06;SNPEFF_AMINO_ACID_CHANGE=R300G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53084588_53085223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537195    GT:AD:DP:GQ:PL    1/1:0,10:10:6.02:82,6,0
12    53085262    rs2684339    C    A    193.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=24.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550823    GT:AD:DP:GQ:PL    1/1:0,7:8:18.06:226,18,0
12    53085302    rs143646129    C    A    105.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.07;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550823    GT:AD:DP:GQ:PL    0/1:3,4:7:91.50:135,0,91
12    53086028    rs627875    A    G    120.39    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=20.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550823    GT:AD:DP:GQ:PL    0/1:1,5:6:24.96:150,0,25
12    53088484    rs10783528    C    T    421.39    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=15.05;ReadPosRankSum=-2.073;SNPEFF_AMINO_ACID_CHANGE=D103N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53088410_53088574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537195    GT:AD:DP:GQ:PL    0/1:13,15:28:99:451,0,418
12    53089460    rs5798218    GACCC    G    431.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=41.6778;IndelType=D;MQ=48.82;MQ0=0;QD=53.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341809    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:473,24,0
12    53090068    rs588706    G    A    117.21    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=20;Dels=0.0;FS=4.337;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=1.733;QD=5.86;ReadPosRankSum=-1.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341809    GT:AD:DP:GQ:PL    0/1:13,7:20:99:147,0,380
12    53091326    rs1464042    T    C    466.13    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.138;DB;DP=46;Dels=0.0;FS=4.13;HRun=0;HaplotypeScore=0.8941;MQ=45.17;MQ0=0;MQRankSum=0.134;QD=10.13;ReadPosRankSum=-0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341809    GT:AD:DP:GQ:PL    0/1:27,19:46:99:496,0,817
12    53091730    rs12426129    C    T    201.73    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.791;QD=7.2;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341809    GT:AD:DP:GQ:PL    0/1:18,10:28:99:232,0,616
12    53096508    rs2684338    G    A    399.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341809    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:432,33,0
12    53096913    rs1625862    G    A    1579.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=T102;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53096676_53097247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341809    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1612,120,0
12    53097263    rs73094689    C    A    240.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.582;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.504;QD=12.04;ReadPosRankSum=0.656;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341809    GT:AD:DP:GQ:PL    0/1:12,8:20:99:271,0,399
12    53162773    rs1464423    A    G    131.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.61;SNPEFF_AMINO_ACID_CHANGE=S547;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53161939_53162894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    1/1:0,9:9:15.03:164,15,0
12    53164537    rs6580903    C    A    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
12    53164848    rs7313832    G    A    2729.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;DB;DP=92;Dels=0.0;FS=4.956;HRun=0;HaplotypeScore=3.8586;MQ=54.0;MQ0=0;MQRankSum=0.832;QD=29.67;ReadPosRankSum=-0.472;SNPEFF_AMINO_ACID_CHANGE=N473;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53164783_53165003;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    1/1:1,88:92:99:2762,183,0
12    53165940    rs6580904    C    T    1283.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_AMINO_ACID_CHANGE=A359T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53165878_53166042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1317,99,0
12    53166192    rs6580905    G    A    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
12    53167313    rs7399317    T    C    1066.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1100,81,0
12    53169044    rs7485556    T    C    617.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:650,48,0
12    53171001    rs11170272    G    A    1196.49    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.899;DB;DP=66;Dels=0.0;FS=8.592;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.103;QD=18.13;ReadPosRankSum=-0.801;SNPEFF_AMINO_ACID_CHANGE=S25;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53170476_53171129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    0/1:29,37:66:99:1226,0,839
12    53171271    rs7484365    G    A    70.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.43;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332411    GT:AD:DP:GQ:PL    1/1:0,3:3:9:102,9,0
12    53185847    rs4919751    T    C    210.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309505    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
12    53186088    rs3887954    G    C    2198.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.015;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=32.34;ReadPosRankSum=0.091;SNPEFF_AMINO_ACID_CHANGE=R375G;SNPEFF_CODON_CHANGE=Cgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53186023_53186187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309505    GT:AD:DP:GQ:PL    1/1:2,66:68:99:2232,127,0
12    53186122    rs4432093    G    A    2058.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.95;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.006;QD=33.2;ReadPosRankSum=-1.285;SNPEFF_AMINO_ACID_CHANGE=R363;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53186023_53186187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309505    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2092,120,0
12    53187150    rs4919750    C    T    126.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309505    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    53188209    rs3215031    G    GC    783.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=5;HaplotypeScore=57.4041;IndelType=I;MQ=60.9;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309505    GT:AD:DP:GQ:PL    1/1:3,21:24:63.20:825,63,0
12    53189040    rs10876347    G    A    351.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.7;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309505    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:385,30,0
12    53189696    rs28721426    C    G    1068.14    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=74;Dels=0.0;FS=6.919;HRun=1;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=0.682;QD=14.43;ReadPosRankSum=0.732;SNPEFF_AMINO_ACID_CHANGE=G44A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53189182_53189892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309505    GT:AD:DP:GQ:PL    0/1:31,43:74:99:1098,0,790
12    53189983    rs1873648    A    G    129.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309505    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
12    53201413    rs931479    T    C    1971.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.4;MQ0=0;QD=31.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549295    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2004,153,0
12    53201680    rs3816880    C    T    251.53    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=18;Dels=0.0;FS=6.662;HRun=0;HaplotypeScore=1.9157;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=13.97;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549295    GT:AD:DP:GQ:PL    0/1:8,10:18:99:282,0,265
12    53202183    rs7956809    C    G    764.50    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.172;DB;DP=60;Dels=0.0;FS=1.101;HRun=1;HaplotypeScore=1.445;MQ=59.23;MQ0=0;MQRankSum=1.438;QD=12.74;ReadPosRankSum=1.194;SNPEFF_AMINO_ACID_CHANGE=S320;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53202078_53202203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458244    GT:AD:DP:GQ:PL    0/1:33,27:60:99:794,0,891
12    53202380    rs2307028    T    C    282.32    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=17;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=16.61;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549295    GT:AD:DP:GQ:PL    0/1:8,9:17:99:312,0,280
12    53204614    rs2307027    C    T    855.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551436    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:889,66,0
12    53204757    rs10783539    T    C    44.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.95;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551436    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:75,0,30
12    53205757    rs7959052    T    C    237.53    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=19.79;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=Q136R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53205547_53205761;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458244    GT:AD:DP:GQ:PL    0/1:3,9:12:89.13:268,0,89
12    53207321    rs17119473    C    T    887.07    PASS    AB=0.338;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=67;Dels=0.0;FS=4.83;HRun=0;HaplotypeScore=3.476;MQ=59.03;MQ0=0;MQRankSum=0.905;QD=13.24;ReadPosRankSum=0.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293774    GT:AD:DP:GQ:PL    0/1:22,43:67:99:917,0,420
12    53207583    rs11267392    C    CCACCAAAGCCACCAGTGCCGAAACCAG    12436.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;FS=0.0;HRun=0;HaplotypeScore=3056.2652;IndelType=I;MQ=39.85;MQ0=0;QD=129.55;SNPEFF_AMINO_ACID_CHANGE=-161LVSALVALV;SNPEFF_CODON_CHANGE=-/CTGGTTTCGGCACTGGTGGCTTTGGTG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_12_53207381_53208335;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293774    GT:AD:DP:GQ:PL    1/1:63,1:96:99:12437,251,0
12    53207584    .    C    A    88.65    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.925;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.792;DP=96;Dels=0.0;FS=1.699;HRun=1;HaplotypeScore=20.9483;MQ=39.85;MQ0=0;MQRankSum=2.263;QD=0.92;ReadPosRankSum=-3.91;SNPEFF_AMINO_ACID_CHANGE=G161C;SNPEFF_CODON_CHANGE=Ggt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53207381_53208335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293774    GT:AD:DP:GQ:PL    0/1:86,7:96:99:119,0,995
12    53207628    rs2638525    G    A    1227.28    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.1;DB;DP=110;Dels=0.0;FS=10.756;HRun=0;HaplotypeScore=3.9612;MQ=44.9;MQ0=0;MQRankSum=1.345;QD=11.16;ReadPosRankSum=1.56;SNPEFF_AMINO_ACID_CHANGE=A146V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53207381_53208335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293774    GT:AD:DP:GQ:PL    0/1:52,58:110:99:1257,0,629
12    53216184    rs4415849    A    G    299.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRT79;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330553    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:332,24,0
12    53216989    rs17688627    G    A    556.61    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.127;QD=19.88;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=A393V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53216800_53217020;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRT79;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330553    GT:AD:DP:GQ:PL    0/1:8,20:28:99:587,0,208
12    53217056    rs10876353    G    A    408.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRT79;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330553    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:441,33,0
12    53217701    rs10876354    C    A    1599.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=L372;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53217671_53217796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRT79;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330553    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1633,120,0
12    53227326    rs2682288    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359499    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    53227803    rs2638497    A    G    1192.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;DB;DP=41;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=2.4536;MQ=58.87;MQ0=0;MQRankSum=-0.953;QD=29.07;ReadPosRankSum=0.347;SNPEFF_AMINO_ACID_CHANGE=L81S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53227568_53228079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRT79;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330553    GT:AD:DP:GQ:PL    1/1:1,40:41:64.67:1225,65,0
12    53241626    rs11170287    A    G    128.58    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=9.89;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304620    GT:AD:DP:GQ:PL    0/1:8,5:13:99:159,0,288
12    53242440    rs2013335    A    G    1167.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=L92P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53242331_53242778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT78;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304620    GT:AD:DP:GQ:PL    1/1:0,38:39:96.24:1200,96,0
12    53294381    rs8608    T    C    1043.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=33.67;SNPEFF_AMINO_ACID_CHANGE=L110;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53294372_53294467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546900    GT:AD:DP:GQ:PL    1/1:0,31:31:78.26:1077,78,0
12    53294821    rs4351899    T    G    1134.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,35:36:90.29:1168,90,0
12    53295058    rs5019800    G    C    1153.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=53.78;MQ0=0;QD=29.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1187,102,0
12    53295063    rs5019799    T    C    1088.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=53.23;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,35:36:90.28:1122,90,0
12    53295079    rs4403881    G    A    642.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.2;MQ0=0;QD=25.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,25:25:72.03:675,72,0
12    53295081    rs4531558    T    G    634.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.2;MQ0=0;QD=25.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,25:25:72.03:668,72,0
12    53295109    rs4479068    G    C    575.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:608,45,0
12    53295551    rs2035876    T    G    569.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=31.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:602,45,0
12    53295917    rs2035875    A    G    685.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:719,60,0
12    53298769    rs1065306    A    G    402.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.86;MQ0=2;QD=26.84;SNPEFF_AMINO_ACID_CHANGE=S27;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53298442_53298811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552150    GT:AD:DP:GQ:PL    1/1:0,15:15:39.07:436,39,0
12    53298835    rs2070910    T    G    131.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KRT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546542    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
12    53343461    rs17120866    A    AC    452.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=22.062;IndelType=I;MQ=62.65;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388835    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:495,36,0
12    53400178    rs10876394    C    T    948.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.2;MQ0=0;QD=32.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551527    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:981,78,0
12    53400440    rs61927957    T    G    204.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262056    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:237,18,0
12    53412486    rs17691581    A    G    109.91    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=52.15;MQ0=0;MQRankSum=-0.684;QD=13.74;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262056    GT:AD:DP:GQ:PL    0/1:3,5:8:99:140,0,99
12    53416119    rs7975725    T    C    81.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549645    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
12    53416251    rs10506315    C    T    746.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549645    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:779,60,0
12    53421507    rs4919697    G    A    1745.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262056    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1779,129,0
12    53421746    rs76226600    CT    C    1292.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=10;HaplotypeScore=181.1173;IndelType=D;MQ=60.73;MQ0=0;QD=21.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549077    GT:AD:DP:GQ:PL    1/1:5,53:61:99:1335,159,0
12    53432088    rs7968918    T    C    1882.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549481    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1915,141,0
12    53432936    rs1548203    A    G    131.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549481    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
12    53433089    rs1548204    C    A    357.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_AMINO_ACID_CHANGE=G509;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53433022_53433127;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416762    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:391,30,0
12    53433486    rs8916    C    T    1168.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=S546;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53433414_53433486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416762    GT:AD:DP:GQ:PL    1/1:0,33:33:90.26:1201,90,0
12    53433788    rs1356994    A    G    160.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=32.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550704    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
12    53434105    rs4825    C    A    71.71    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.54;MQ0=3;MQRankSum=-0.361;QD=5.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420463    GT:AD:DP:GQ:PL    0/1:8,4:12:99:102,0,153
12    53442956    rs12369033    G    C    677.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=28.22;SNPEFF_AMINO_ACID_CHANGE=R10T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53442733_53443032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TENC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314276    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:710,57,0
12    53445959    rs10783560    T    C    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TENC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314250    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    53449321    rs7315980    G    A    630.68    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.566;DB;DP=47;Dels=0.0;FS=12.385;HRun=0;HaplotypeScore=0.8321;MQ=59.01;MQ0=0;MQRankSum=1.588;QD=13.42;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TENC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551302    GT:AD:DP:GQ:PL    0/1:26,21:47:99:661,0,661
12    53449735    rs2364153    T    C    299.56    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.093;QD=13.02;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TENC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551302    GT:AD:DP:GQ:PL    0/1:13,10:23:99:330,0,469
12    53452263    rs66607805    CCAGGTGGCAGG    C    385.11    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=20;FS=6.154;HRun=0;HaplotypeScore=190.5573;IndelType=D;MQ=51.96;MQ0=0;MQRankSum=-1.532;QD=19.26;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TENC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549498    GT:AD:DP:GQ:PL    0/1:14,5:20:99:424,0,759
12    53453433    rs11558984    G    A    485    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.383;DB;DP=36;Dels=0.0;FS=1.376;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.05;QD=13.47;ReadPosRankSum=1.017;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TENC1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000443113    GT:AD:DP:GQ:PL    0/1:16,20:36:99:515,0,428
12    53454176    rs73099914    C    T    285.38    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=16.79;ReadPosRankSum=-0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301463    GT:AD:DP:GQ:PL    0/1:6,11:17:99:315,0,205
12    53459881    rs10876402    T    A    484.87    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.991;QD=19.39;ReadPosRankSum=1.557;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537540    GT:AD:DP:GQ:PL    0/1:9,16:25:99:515,0,282
12    53468419    rs2277329    T    G    996.36    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.639;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.007;QD=16.07;ReadPosRankSum=0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301463    GT:AD:DP:GQ:PL    0/1:28,34:62:99:1026,0,777
12    53499576    rs3093945    T    G    376.48    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.61;DB;DP=26;Dels=0.0;FS=3.074;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=14.48;ReadPosRankSum=1.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301464    GT:AD:DP:GQ:PL    0/1:10,16:26:99:406,0,344
12    53566491    rs74088980    C    T    71.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=7.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461392    GT:AD:DP:GQ:PL    0/1:5,4:9:99:101,0,137
12    53573499    rs11401485    G    GT    1427.99    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.745;DB;DP=121;FS=2.665;HRun=10;HaplotypeScore=486.5875;IndelType=I;MQ=57.87;MQ0=0;MQRankSum=0.653;QD=11.8;ReadPosRankSum=-0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267085    GT:AD:DP:GQ:PL    0/1:70,49:121:99:1467,0,815
12    53580131    rs3814778    T    C    2123.50    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.656;DB;DP=135;Dels=0.0;FS=2.293;HRun=1;HaplotypeScore=5.6932;MQ=59.83;MQ0=0;MQRankSum=0.539;QD=15.73;ReadPosRankSum=0.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267082    GT:AD:DP:GQ:PL    0/1:63,72:135:99:2153,0,1781
12    53587468    rs2272300    T    G    168.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=12.01;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547154    GT:AD:DP:GQ:PL    0/1:8,6:14:99:198,0,146
12    53590347    rs11574538    C    T    118.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.741;QD=11.84;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547154    GT:AD:DP:GQ:PL    0/1:4,6:10:99:148,0,106
12    53605496    rs61754163    C    T    132.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=6.64;ReadPosRankSum=-1.775;SNPEFF_AMINO_ACID_CHANGE=G371;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53604835_53605647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RARG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327550    GT:AD:DP:GQ:PL    0/1:12,8:20:99:163,0,391
12    53647373    rs10876422    T    C    397.04    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.772;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.42;MQ0=0;MQRankSum=0.099;QD=9.93;ReadPosRankSum=-1.035;SNPEFF_AMINO_ACID_CHANGE=L252;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53646602_53648188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MFSD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329548    GT:AD:DP:GQ:PL    0/1:26,14:40:99:427,0,793
12    53662624    rs6580942    C    A    334.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=27.89;SNPEFF_AMINO_ACID_CHANGE=A25D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53662539_53662631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257934    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:368,27,0
12    53662735    rs4758965    C    T    780.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257934    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:814,60,0
12    53664015    rs3741663    G    A    363.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553219    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:397,30,0
12    53664148    rs4758963    G    A    567.03    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=1.879;DB;DP=57;Dels=0.0;FS=4.232;HRun=0;HaplotypeScore=1.9456;MQ=59.19;MQ0=0;MQRankSum=0.931;QD=9.95;ReadPosRankSum=1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553219    GT:AD:DP:GQ:PL    0/1:35,22:57:99:597,0,1003
12    53664308    rs68007588    GTTTGGGGTTGCTCCACTGCCCTCAAACAGC    G    369.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=902.42;IndelType=D;MQ=52.36;MQ0=0;MQRankSum=0.742;QD=8.59;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553219    GT:AD:DP:GQ:PL    1/1:37,6:43:16.28:411,16,0
12    53666195    rs11170496    G    A    76.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553219    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
12    53666713    rs4759086    A    G    367.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553219    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:400,30,0
12    53670545    rs1318648    C    A    1163.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=31.44;SNPEFF_AMINO_ACID_CHANGE=S289R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53670404_53670643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000552671    GT:AD:DP:GQ:PL    1/1:0,37:37:93.27:1196,93,0
12    53671549    rs2272313    A    G    3686.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=59.43;MQ0=0;QD=32.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550026    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3687,286,0
12    53676814    rs1609474    T    C    480.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257934    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:514,39,0
12    53677072    rs1609473    T    G    1671.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257934    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1704,135,0
12    53677089    rs4454760    G    A    1715.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.16;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257934    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1749,132,0
12    53681883    rs1110719    A    T    659.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.71;SNPEFF_AMINO_ACID_CHANGE=K1110M;SNPEFF_CODON_CHANGE=aAg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53681756_53682125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000552671    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:693,51,0
12    53682267    rs66733104    CAA    C    775.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=3;HaplotypeScore=98.9527;IndelType=D;MQ=59.32;MQ0=0;QD=43.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535123    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:818,54,0
12    53682326    rs1110720    G    A    599    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=28.52;SNPEFF_AMINO_ACID_CHANGE=G1192;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53682322_53682483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552671    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:632,51,0
12    53682615    rs3080425    CTCTG    C    524.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=51.3976;IndelType=D;MQ=48.48;MQ0=0;QD=52.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535123    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:566,30,0
12    53682986    rs3214023    C    T    2449.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7613;MQ=59.69;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=C1282;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53682874_53683087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552671    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2483,190,0
12    53685299    rs1809239    T    C    687.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.44;MQ0=0;QD=36.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535123    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:720,54,0
12    53686703    rs1056685    G    A    899.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_AMINO_ACID_CHANGE=R1712H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53686590_53686754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000552671    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:933,69,0
12    53689190    rs1870240    C    G    581.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257934    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:615,48,0
12    53691962    rs2694861    C    A    2982.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ESPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257934    GT:AD:DP:GQ:PL    1/1:0,86:87:99:3015,238,0
12    53692955    rs1020745    G    A    222.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFDN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547228    GT:AD:DP:GQ:PL    1/1:0,9:10:21.05:255,21,0
12    53693532    rs1534284    A    G    780.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.9;SNPEFF_AMINO_ACID_CHANGE=Q4R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53693470_53693737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267103    GT:AD:DP:GQ:PL    1/1:0,29:29:75.17:813,75,0
12    53693533    rs1534283    A    C    889.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_AMINO_ACID_CHANGE=Q4H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53693470_53693737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267103    GT:AD:DP:GQ:PL    1/1:0,30:30:78.21:923,78,0
12    53700848    rs1534282    C    T    2365.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=T186I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53700750_53700961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000549488    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2399,181,0
12    53700860    rs711316    A    G    2013.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=H190R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53700750_53700961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000549488    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2047,159,0
12    53702371    rs4759287    T    C    3306.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546393    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3307,268,0
12    53703021    rs1546808    G    A    3927.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6297;MQ=59.8;MQ0=0;QD=34.76;SNPEFF_AMINO_ACID_CHANGE=F161;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53702941_53703065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000550286    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3928,307,0
12    53708011    rs7953255    G    C    4969.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546562    GT:AD:DP:GQ:PL    1/1:0,144:145:99:4970,373,0
12    53709708    rs7960963    G    T    171.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209873    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
12    53714290    rs4759232    T    G    947.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209873    GT:AD:DP:GQ:PL    1/1:0,29:29:78.23:981,78,0
12    53714496    rs4759231    A    G    741.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=59.07;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209873    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:775,60,0
12    53714509    rs7298879    T    G    550.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209873    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:584,42,0
12    53714993    rs4759020    C    T    519.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209873    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:552,42,0
12    53722098    rs7138938    A    G    1081.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=30.89;SNPEFF_AMINO_ACID_CHANGE=H358;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53721930_53723204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537210    GT:AD:DP:GQ:PL    1/1:0,35:35:93.26:1114,93,0
12    53722128    rs7139272    G    A    1638.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.62;SNPEFF_AMINO_ACID_CHANGE=S348;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_53721930_53723204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537210    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1671,126,0
12    53723368    rs10747667    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303846    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
12    53817916    rs2272002    T    A    264.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.884;QD=17.63;ReadPosRankSum=0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257863    GT:AD:DP:GQ:PL    0/1:6,9:15:99:294,0,185
12    53819467    rs2071558    C    T    353.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=16.82;ReadPosRankSum=-0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553037    GT:AD:DP:GQ:PL    0/1:9,12:21:99:383,0,292
12    53822670    rs3741664    G    A    206.03    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.543;DB;DP=23;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=8.96;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553037    GT:AD:DP:GQ:PL    0/1:14,9:23:99:236,0,422
12    53822992    rs784891    T    C    30.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=-1.026;QD=7.73;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548303    GT:AD:DP:GQ:PL    0/1:2,2:4:60.89:61,0,70
12    53823175    rs72269256    C    CA    243.60    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.794;DB;DP=16;FS=0.0;HRun=13;HaplotypeScore=47.3095;IndelType=I;MQ=58.46;MQ0=0;MQRankSum=-1.083;QD=15.22;ReadPosRankSum=-0.505;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548303    GT:AD:DP:GQ:PL    0/1:3,11:16:16.39:283,0,16
12    53824143    rs11170555    A    G    305.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=24;Dels=0.0;FS=6.628;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.992;QD=12.72;ReadPosRankSum=-1.703;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548303    GT:AD:DP:GQ:PL    0/1:12,12:24:99:335,0,439
12    53824744    rs12368222    A    G    67.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.94;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548303    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:98,0,29
12    53825325    rs10876455    T    C    190.73    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.51;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=10.6;ReadPosRankSum=0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMHR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257863    GT:AD:DP:GQ:PL    0/1:10,8:18:99:221,0,354
12    53839770    rs113942405    T    TCTTTCCC    1611.25    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.116;DB;DP=39;FS=3.634;HRun=0;HaplotypeScore=216.9922;IndelType=I;MQ=48.45;MQ0=0;MQRankSum=-3.188;QD=37.47;ReadPosRankSum=-1.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549740    GT:AD:DP:GQ:PL    0/1:29,11:39:99:1650,0,1020
12    53839956    rs8707    C    G    115.80    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.442;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.56;MQ0=0;MQRankSum=-2.208;QD=6.09;ReadPosRankSum=-0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549740    GT:AD:DP:GQ:PL    0/1:9,10:19:99:146,0,278
12    53849996    rs1683152    G    A    76.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550192    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
12    53877562    rs784565    C    T    1335.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP3K12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547151    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1368,105,0
12    53880122    rs3816806    T    C    63.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.29;ReadPosRankSum=0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP3K12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547151    GT:AD:DP:GQ:PL    0/1:8,4:12:93.53:94,0,284
12    53926889    rs12422400    G    A    262.77    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=15.46;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550373    GT:AD:DP:GQ:PL    0/1:8,9:17:99:293,0,234
12    53936878    rs8938    G    T    75.92    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.98;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306727    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:106,0,27
12    53946595    rs3741652    C    G    191.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306727    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:224,18,0
12    54063493    rs1800634    T    C    133.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338662    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
12    54063501    rs1800633    G    A    162.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338662    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
12    54069803    rs916134    A    G    548.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338662    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:581,48,0
12    54070062    rs4020143    C    CTG    498.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=21.8756;IndelType=I;MQ=61.07;MQ0=0;QD=49.81;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495596    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:540,30,0
12    54108228    rs2277368    G    C    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=8.77;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCOCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454332    GT:AD:DP:GQ:PL    0/1:1,2:4:31.62:65,0,32
12    54339052    rs4759058    C    A    2419.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.38;MQ0=0;QD=32.69;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243056    GT:AD:DP:GQ:PL    1/1:1,72:74:99:2452,184,0
12    54367061    rs4759315    T    G    1230.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=S12;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_54366912_54367711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXC11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243082    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1264,108,0
12    54385599    rs11614913    C    T    297.43    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.337;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.2;QD=13.52;ReadPosRankSum=1.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303460    GT:AD:DP:GQ:PL    0/1:9,13:22:99:327,0,278
12    54394497    rs2241820    C    T    40.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.53;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=A175;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_54393903_54394510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HOXC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303450    GT:AD:DP:GQ:PL    0/1:1,2:3:16.66:71,0,17
12    54405190    rs4142680    C    T    956.52    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=98;Dels=0.0;FS=7.248;HRun=2;HaplotypeScore=11.7322;MQ=56.37;MQ0=0;MQRankSum=2.152;QD=9.76;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504315    GT:AD:DP:GQ:PL    0/1:46,51:98:99:987,0,898
12    54575458    rs971    T    C    1195.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.3;MQ0=0;QD=36.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SMUG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401977    GT:AD:DP:GQ:PL    1/1:0,32:33:90.29:1229,90,0
12    54575800    rs2233921    C    A    1280.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SMUG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503306    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1314,102,0
12    54635846    rs2293602    G    T    147.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=18.38;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209875    GT:AD:DP:GQ:PL    0/1:3,5:8:93.29:177,0,93
12    54651471    rs1140681    A    G    680.13    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=12.37;ReadPosRankSum=-1.428;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_12_54651298_54651476;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000209875    GT:AD:DP:GQ:PL    0/1:30,25:55:99:710,0,953
12    54677980    rs7967622    C    T    1742.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=37.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547708    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1775,132,0
12    54687232    rs10506328    A    C    663.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312156    GT:AD:DP:GQ:PL    1/1:0,23:23:54.17:696,54,0
12    54734522    rs35078728    C    CT    92.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=39.5213;IndelType=I;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=15.49;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262061    GT:AD:DP:GQ:PL    0/1:1,5:6:6.63:132,0,7
12    54764618    rs2706248    T    C    1197.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546919    GT:AD:DP:GQ:PL    1/1:0,32:32:93.30:1230,93,0
12    54767613    rs2706258    C    T    72.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1968;MQ=44.1;MQ0=0;MQRankSum=0.727;QD=14.41;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338010    GT:AD:DP:GQ:PL    0/1:2,3:5:21.40:102,0,21
12    54767812    rs2887875    G    A    545.58    PASS    AB=0.174;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.405;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.043;QD=23.72;ReadPosRankSum=-0.809;SNPEFF_AMINO_ACID_CHANGE=D102;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_54767757_54767919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394313    GT:AD:DP:GQ:PL    0/1:4,19:23:99:576,0,100
12    54769864    rs2700153    A    C    31.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.39;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF385A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338010    GT:AD:DP:GQ:PL    0/1:3,2:5:61.95:62,0,107
12    54796757    rs7306692    C    T    454.31    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.185;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.894;QD=15.14;ReadPosRankSum=-0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435631    GT:AD:DP:GQ:PL    0/1:14,16:30:99:484,0,452
12    54799450    rs1249378    A    G    1623.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;QD=28.48;SNPEFF_AMINO_ACID_CHANGE=D338;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_54799448_54799500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293379    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1656,126,0
12    54805753    rs1922254    G    T    503    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293379    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:536,45,0
12    54805765    rs1249181    C    T    521.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293379    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:555,42,0
12    54893027    rs7310321    G    A    33.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.77;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293373    GT:AD:DP:GQ:PL    0/1:5,2:7:63.39:63,0,183
12    54903308    rs1795845    T    C    101.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=8.44;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293373    GT:AD:DP:GQ:PL    0/1:8,4:12:99:131,0,293
12    54905815    rs2458409    C    G    1564.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=38.16;SNPEFF_AMINO_ACID_CHANGE=L239;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_54905733_54905889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545638    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1598,117,0
12    54910837    rs1691630    G    A    1001.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=37.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548916    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1035,78,0
12    54911768    rs1795838    C    T    1199.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293373    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1233,99,0
12    54922340    rs4758964    A    G    75.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.62;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293373    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,105
12    54925072    rs35861129    C    T    1201.96    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.113;DB;DP=94;Dels=0.0;FS=2.68;HRun=0;HaplotypeScore=0.9665;MQ=59.75;MQ0=0;MQRankSum=1.374;QD=12.79;ReadPosRankSum=-0.158;SNPEFF_AMINO_ACID_CHANGE=G795;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_54925044_54925141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545638    GT:AD:DP:GQ:PL    0/1:44,50:94:99:1232,0,1329
12    54925750    rs10747697    A    C    109.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293373    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:142,12,0
12    54932788    rs4758966    T    C    1158.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCKAP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548980    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1192,90,0
12    54943620    rs79700402    C    A    430.70    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.452;QD=16.57;ReadPosRankSum=-0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243052    GT:AD:DP:GQ:PL    0/1:10,16:26:99:461,0,251
12    54943775    rs117325458    T    A    358.14    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=26;Dels=0.0;FS=4.925;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.591;QD=13.77;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243052    GT:AD:DP:GQ:PL    0/1:12,14:26:99:388,0,365
12    54966757    rs2280426    G    A    111.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.937;QD=15.96;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPP1R1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379690    GT:AD:DP:GQ:PL    0/1:3,4:7:59.74:142,0,60
12    54970236    rs11170976    G    A    475.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548855    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:509,39,0
12    54975837    rs1249958    T    C    1537.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.54;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=E109G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_54975760_54975915;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPP1R1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257905    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1570,123,0
12    55248357    rs1048371    G    T    1337.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=35.19;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_55248321_55248424;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308796    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1370,99,0
12    55250549    rs10783685    T    G    861.01    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=47;Dels=0.0;FS=4.134;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.871;QD=18.32;ReadPosRankSum=0.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547958    GT:AD:DP:GQ:PL    0/1:20,27:47:99:891,0,696
12    55250612    rs1349910    A    G    1350.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=30.02;SNPEFF_AMINO_ACID_CHANGE=A48;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55250554_55250676;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546809    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1384,114,0
12    55250714    rs10876639    G    A    1037.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8991;MQ=60.0;MQ0=0;MQRankSum=-1.319;QD=13.47;ReadPosRankSum=-0.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547958    GT:AD:DP:GQ:PL    0/1:38,38:77:99:1067,0,1077
12    55251834    rs2306849    C    T    109.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.63;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547958    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,144
12    55252212    rs60749539    T    G    200.29    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.61;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MUCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308796    GT:AD:DP:GQ:PL    0/1:1,6:7:20.16:230,0,20
12    55421250    rs2656804    C    T    2565.70    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=9.215;DB;DP=142;DS;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=1.6918;MQ=59.68;MQ0=0;MQRankSum=-0.043;QD=18.07;ReadPosRankSum=-1.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEUROD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242994    GT:AD:DP:GQ:PL    0/1:64,78:142:99:2596,0,1677
12    55421299    rs2243885    C    A    1192.25    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.81;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6634;MQ=59.66;MQ0=0;MQRankSum=0.834;QD=17.53;ReadPosRankSum=1.439;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEUROD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242994    GT:AD:DP:GQ:PL    0/1:30,38:68:99:1222,0,998
12    55677395    rs10876738    C    A    111.83    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=13.98;ReadPosRankSum=-1.92;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR6C72P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379669    GT:AD:DP:GQ:PL    0/1:3,5:8:99:142,0,108
12    55677756    rs10783719    T    C    705.80    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.906;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6507;MQ=60.0;MQ0=0;MQRankSum=-0.068;QD=14.12;ReadPosRankSum=-0.264;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR6C72P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379669    GT:AD:DP:GQ:PL    0/1:22,28:50:99:736,0,727
12    55678228    rs6581026    C    A    1217.24    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.2;DB;DP=81;Dels=0.0;FS=1.878;HRun=1;HaplotypeScore=0.8941;MQ=59.48;MQ0=0;MQRankSum=1.117;QD=15.03;ReadPosRankSum=-0.479;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR6C72P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379669    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1247,0,1091
12    55688267    rs7308594    G    A    600.85    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=4.013;DB;DP=42;Dels=0.0;FS=9.548;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=14.31;ReadPosRankSum=0.118;SNPEFF_AMINO_ACID_CHANGE=Y250;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55688072_55689016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358433    GT:AD:DP:GQ:PL    0/1:23,19:42:99:631,0,664
12    55706630    rs11171406    A    G    265.54    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.589;DB;DP=40;Dels=0.0;FS=3.375;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.627;QD=6.64;ReadPosRankSum=2.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=OR6C5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452388    GT:AD:DP:GQ:PL    0/1:30,10:40:99:296,0,964
12    55714406    rs5798345    C    CA    965.35    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.066;DB;DP=59;FS=1.131;HRun=2;HaplotypeScore=139.5248;IndelType=I;MQ=60.18;MQ0=0;MQRankSum=0.497;QD=16.36;ReadPosRankSum=0.11;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_55714346_55715408;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000379668    GT:AD:DP:GQ:PL    0/1:33,26:59:99:1004,0,964
12    55714772    rs7132431    G    A    691.16    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.095;DB;DP=50;Dels=0.0;FS=4.341;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=13.82;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=C130Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55714346_55715408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379668    GT:AD:DP:GQ:PL    0/1:28,22:50:99:721,0,839
12    55714876    rs7132347    C    G    629.11    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=47;Dels=0.0;FS=8.917;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=13.39;ReadPosRankSum=-0.926;SNPEFF_AMINO_ACID_CHANGE=H165D;SNPEFF_CODON_CHANGE=Cat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55714346_55715408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379668    GT:AD:DP:GQ:PL    0/1:25,22:47:99:659,0,837
12    55715119    rs7132916    G    A    966.97    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.19;MQ0=0;MQRankSum=0.731;QD=11.24;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=V246I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55714346_55715408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379668    GT:AD:DP:GQ:PL    0/1:50,36:86:99:997,0,1545
12    55758832    rs7962135    T    C    983.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343399    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1016,78,0
12    55759878    rs10876751    A    G    256.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343399    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:290,24,0
12    55794264    rs7967395    A    G    302.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.54;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_12_55794214_55795289;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379665    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:336,27,0
12    55794976    rs7971073    A    G    3306.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=T222A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55794214_55795289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C65;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379665    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3307,253,0
12    55805499    rs61956295    G    A    227.80    MQFilter40    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.844;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=18.21;MQ0=34;MQRankSum=0.578;QD=4.38;ReadPosRankSum=-0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379664    GT:AD:DP:GQ:PL    0/1:35,17:52:99:258,0,163
12    55805617    rs113584176    A    C    1120.87    MQFilter40    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=115;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9819;MQ=34.61;MQ0=29;MQRankSum=-1.741;QD=9.75;ReadPosRankSum=-1.577;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    0/1:66,49:115:99:1151,0,1197
12    55805647    rs12825123    A    G    1441.58    MQFilter40    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.802;DB;DP=119;Dels=0.0;FS=0.745;HRun=0;HaplotypeScore=0.0;MQ=38.99;MQ0=15;MQRankSum=2.185;QD=12.11;ReadPosRankSum=-0.301;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    0/1:59,60:119:99:1472,0,1461
12    55805787    rs7300096    C    A    550.23    MQFilter40    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.763;DB;DP=131;Dels=0.0;FS=5.755;HRun=1;HaplotypeScore=0.5784;MQ=22.51;MQ0=69;MQRankSum=-0.159;QD=4.2;ReadPosRankSum=-2.391;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    0/1:87,44:131:99:580,0,1040
12    55806134    rs12833263    T    C    1438.12    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=86;Dels=0.0;FS=3.028;HRun=0;HaplotypeScore=0.0;MQ=49.75;MQ0=2;MQRankSum=0.981;QD=16.72;ReadPosRankSum=0.422;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    0/1:32,54:86:99:1468,0,942
12    55806238    rs7300594    A    G    704.05    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=96;Dels=0.0;FS=2.155;HRun=1;HaplotypeScore=3.5204;MQ=43.03;MQ0=8;MQRankSum=0.335;QD=7.33;ReadPosRankSum=-0.452;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    0/1:48,47:96:99:734,0,1108
12    55806437    rs114890660    T    C    2066.06    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.131;DB;DP=184;Dels=0.0;FS=9.16;HRun=0;HaplotypeScore=4.6711;MQ=44.83;MQ0=2;MQRankSum=-1.855;QD=11.23;ReadPosRankSum=-1.311;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    0/1:97,85:184:99:2096,0,2588
12    55807293    rs3887805    A    G    353.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.9;MQ0=1;QD=20.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    1/1:0,17:17:36.08:387,36,0
12    55807588    rs12826694    C    T    247.31    MQFilter40    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.178;DB;DP=58;Dels=0.0;FS=4.492;HRun=0;HaplotypeScore=0.0;MQ=35.45;MQ0=2;MQRankSum=0.135;QD=4.26;ReadPosRankSum=-0.058;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    0/1:42,16:58:99:277,0,940
12    55808469    rs7132076    C    G    2381.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=53.59;MQ0=1;QD=31.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PHC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326184    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2414,184,0
12    55819933    rs10876774    T    C    56.17    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=5.11;ReadPosRankSum=-0.715;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328314    GT:AD:DP:GQ:PL    0/1:8,3:11:86.17:86,0,287
12    55820121    rs6581046    C    T    1128.75    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.22;DB;DP=77;Dels=0.0;FS=9.755;HRun=2;HaplotypeScore=1.7465;MQ=59.4;MQ0=0;MQRankSum=1.202;QD=14.66;ReadPosRankSum=-0.588;SNPEFF_AMINO_ACID_CHANGE=F28;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55820038_55820976;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C76;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328314    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1159,0,1107
12    55820958    rs67035246    CA    C    107.57    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=25;FS=6.864;HRun=12;HaplotypeScore=129.6754;IndelType=D;MQ=57.63;MQ0=0;MQRankSum=0.144;QD=4.3;ReadPosRankSum=1.973;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_55820038_55820976;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C76;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000328314    GT:AD:DP:GQ:PL    0/1:15,10:25:99:147,0,187
12    55863381    rs10747756    A    G    966.37    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.545;DB;DP=90;Dels=0.0;FS=0.812;HRun=1;HaplotypeScore=1.664;MQ=59.07;MQ0=0;MQRankSum=1.467;QD=10.74;ReadPosRankSum=-0.966;SNPEFF_AMINO_ACID_CHANGE=L181P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55862984_55863922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327335    GT:AD:DP:GQ:PL    0/1:53,37:90:99:996,0,1694
12    55886294    rs7133698    G    A    1114.82    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.321;DB;DP=99;Dels=0.0;FS=8.12;HRun=0;HaplotypeScore=1.8305;MQ=60.0;MQ0=0;MQRankSum=1.345;QD=11.26;ReadPosRankSum=-1.712;SNPEFF_AMINO_ACID_CHANGE=A45T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55886162_55887100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C68;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000548615    GT:AD:DP:GQ:PL    0/1:56,43:99:99:1145,0,1710
12    55944926    rs7313959    G    A    2601.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=59.42;MQ0=0;QD=32.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394256    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2635,199,0
12    55945119    rs7313899    A    G    4699.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.32;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=I37V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_55944983_55946028;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6C4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394256    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4699,352,0
12    56030938    rs10876838    C    T    657    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.493;DB;DP=54;Dels=0.0;FS=1.099;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.17;QD=12.17;ReadPosRankSum=-0.348;SNPEFF_AMINO_ACID_CHANGE=P88L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56030644_56031638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309675    GT:AD:DP:GQ:PL    0/1:30,24:54:99:687,0,919
12    56031273    rs7970885    G    A    1092.86    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.327;DB;DP=63;Dels=0.0;FS=5.458;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=-0.726;QD=17.35;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=V200M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56030644_56031638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309675    GT:AD:DP:GQ:PL    0/1:28,35:63:99:1123,0,729
12    56077740    rs11615467    C    T    865.34    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.947;DB;DP=60;Dels=0.0;FS=2.323;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.42;ReadPosRankSum=-1.775;SNPEFF_AMINO_ACID_CHANGE=N214;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56077597_56078395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394252    GT:AD:DP:GQ:PL    0/1:31,29:60:99:895,0,982
12    56077964    rs2293409    A    C    249.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=17.84;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257879    GT:AD:DP:GQ:PL    0/1:6,8:14:99:280,0,183
12    56082025    rs17117883    G    C    274.34    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.481;DB;DP=43;Dels=0.0;FS=5.551;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.474;QD=6.38;ReadPosRankSum=0.609;SNPEFF_AMINO_ACID_CHANGE=S1000;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56081986_56082084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347027    GT:AD:DP:GQ:PL    0/1:31,12:43:99:304,0,1023
12    56082568    rs11613875    A    G    297.60    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=27;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=3.3293;MQ=57.39;MQ0=0;MQRankSum=1.395;QD=11.02;ReadPosRankSum=-1.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394252    GT:AD:DP:GQ:PL    0/1:15,12:27:99:328,0,406
12    56093817    rs11171660    T    G    202.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.858;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=9.66;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553737    GT:AD:DP:GQ:PL    0/1:14,7:21:99:233,0,330
12    56115585    rs3138142    C    T    433.13    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.56;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.179;QD=13.13;ReadPosRankSum=0.377;SNPEFF_AMINO_ACID_CHANGE=I141;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56115473_56115731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RDH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257895    GT:AD:DP:GQ:PL    0/1:18,15:33:99:463,0,443
12    56115778    rs3138141    C    A    180.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.05;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLOC1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257899    GT:AD:DP:GQ:PL    0/1:4,6:10:99:211,0,129
12    56117570    rs3138136    C    T    194.12    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.543;QD=9.24;ReadPosRankSum=-2.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLOC1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257899    GT:AD:DP:GQ:PL    0/1:13,8:21:99:224,0,475
12    56120096    rs35746357    C    T    206.66    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6711;MQ=53.23;MQ0=0;MQRankSum=0.386;QD=11.48;ReadPosRankSum=1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546457    GT:AD:DP:GQ:PL    0/1:8,10:18:99:237,0,204
12    56213297    rs56108400    G    T    570.76    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.837;DB;DP=67;Dels=0.0;FS=9.332;HRun=1;HaplotypeScore=3.1442;MQ=59.31;MQ0=0;MQRankSum=-0.434;QD=8.52;ReadPosRankSum=-1.195;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317269    GT:AD:DP:GQ:PL    0/1:45,22:67:99:601,0,1558
12    56220839    rs10876854    G    T    297.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.19;MQ0=0;QD=33.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546957    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:331,27,0
12    56220974    rs113686135    CA    C    175.88    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=73;FS=0.0;HRun=18;HaplotypeScore=512.6249;IndelType=D;MQ=51.14;MQ0=0;MQRankSum=-0.646;QD=2.35;ReadPosRankSum=-0.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546957    GT:AD:DP:GQ:PL    0/1:36,19:73:99:215,0,116
12    56225284    rs7965333    C    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MMP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322569    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    56228504    rs750667    C    G    84.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MMP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322569    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
12    56228580    rs73119282    G    T    195.94    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=2.059;HRun=0;HaplotypeScore=1.8288;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=12.25;ReadPosRankSum=-1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MMP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322569    GT:AD:DP:GQ:PL    0/1:7,9:16:99:226,0,185
12    56230726    rs1056785    A    C    341.89    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.182;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.642;QD=14.86;ReadPosRankSum=-0.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MMP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409200    GT:AD:DP:GQ:PL    0/1:11,12:23:99:372,0,390
12    56236043    rs2291268    G    A    668.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MMP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322569    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:702,54,0
12    56236318    rs7310325    T    C    627.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MMP19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322569    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:660,57,0
12    56236531    rs7294345    A    G    215.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_AMINO_ACID_CHANGE=P28;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56236528_56236706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MMP19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322569    GT:AD:DP:GQ:PL    1/1:0,9:9:21.04:249,21,0
12    56295544    rs111248487    GAAGT    G    2592.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=254.0347;IndelType=D;MQ=53.35;MQ0=0;QD=54.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIBG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547925    GT:AD:DP:GQ:PL    1/1:0,48:48:99:2635,141,0
12    56295734    rs7302270    A    G    6966.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=214;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2276;MQ=58.56;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=P178;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56295198_56296139;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIBG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398213    GT:AD:DP:GQ:PL    1/1:0,214:214:99:6967,524,0
12    56330572    rs7297871    G    A    341.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=R67Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56330437_56330640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000549629    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:375,27,0
12    56330906    rs55704764    T    C    667.66    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=36;Dels=0.0;FS=8.655;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.988;QD=18.55;ReadPosRankSum=-2.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547015    GT:AD:DP:GQ:PL    0/1:13,23:36:99:698,0,418
12    56335107    rs1136082    A    G    1639.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.16;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=Q26;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56335036_56335109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552903    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1673,129,0
12    56335150    rs2291615    G    A    598.72    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=38;Dels=0.0;FS=17.557;HRun=0;HaplotypeScore=4.5002;MQ=57.53;MQ0=0;MQRankSum=-1.447;QD=15.76;ReadPosRankSum=-0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432422    GT:AD:DP:GQ:PL    0/1:18,20:38:99:629,0,580
12    56348028    rs1052206    G    A    1368.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.09;SNPEFF_AMINO_ACID_CHANGE=N281;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56347984_56348133;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMEL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000550447    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1402,108,0
12    56351346    rs1052165    G    A    1293.65    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=103;Dels=0.0;FS=2.578;HRun=0;HaplotypeScore=1.7465;MQ=59.33;MQ0=0;MQRankSum=-1.721;QD=12.56;ReadPosRankSum=1.762;SNPEFF_AMINO_ACID_CHANGE=P161;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56350733_56351455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMEL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539511    GT:AD:DP:GQ:PL    0/1:53,50:103:99:1324,0,1602
12    56398454    rs773115    G    C    898.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.4;MQ0=0;QD=28.99;SNPEFF_AMINO_ACID_CHANGE=S427;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56397402_56399309;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUOX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266971    GT:AD:DP:GQ:PL    1/1:1,30:31:78.19:932,78,0
12    56417403    rs2658479    T    C    200.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552689    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:234,18,0
12    56420395    rs4759239    T    C    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547668    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
12    56426577    rs1619653    A    G    1332.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=38.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548601    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1366,102,0
12    56428344    rs2452822    G    C    2846.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548601    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2879,208,0
12    56435929    rs1131017    C    G    627.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.16;MQ0=0;QD=27.28;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_56435637_56435953;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356464    GT:AD:DP:GQ:PL    1/1:1,21:22:51.16:660,51,0
12    56436472    rs705706    T    G    686.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.11;MQ0=0;QD=32.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262032    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:720,54,0
12    56438154    rs1612055    C    T    34.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=8.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356464    GT:AD:DP:GQ:PL    1/1:0,3:4:6:65,6,0
12    56477694    rs2271194    A    T    2313.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DB;DP=68;Dels=0.0;FS=3.451;HRun=0;HaplotypeScore=2.4534;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=34.02;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267101    GT:AD:DP:GQ:PL    1/1:2,66:68:99:2347,136,0
12    56478658    rs7971751    A    C    362.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267101    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
12    56480583    rs877636    G    A    331.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=30.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411731    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:364,27,0
12    56482180    rs2292239    T    G    715.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411731    GT:AD:DP:GQ:PL    1/1:0,20:20:60.14:748,60,0
12    56503127    rs11171744    G    C    230.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.556;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.15;MQ0=0;MQRankSum=0.669;QD=10.49;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PA2G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551061    GT:AD:DP:GQ:PL    0/1:12,10:22:99:261,0,392
12    56551339    rs28365930    C    CAAA    851.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=6;HaplotypeScore=81.2893;IndelType=I;MQ=51.99;MQ0=0;QD=50.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405661    GT:AD:DP:GQ:PL    1/1:4,12:17:45.15:893,45,0
12    56553984    .    CACTT    C    925.63    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DP=35;FS=1.32;HRun=0;HaplotypeScore=175.4841;IndelType=D;MQ=57.44;MQ0=0;MQRankSum=0.347;QD=26.45;ReadPosRankSum=0.314;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207437    GT:AD:DP:GQ:PL    0/1:18,17:35:99:965,0,1412
12    56561735    rs61179940    A    AAC    236.57    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.428;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=212.0046;IndelType=I;MQ=53.71;MQ0=0;MQRankSum=0.15;QD=6.96;ReadPosRankSum=-1.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547408    GT:AD:DP:GQ:PL    0/1:26,7:34:99:276,0,148
12    56564056    rs60041436    CTTTT    C    239.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=26.6429;IndelType=D;MQ=59.73;MQ0=0;QD=47.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548130    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:281,15,0
12    56565392    rs7311008    T    G    665.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548130    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:699,54,0
12    56575742    rs773644    T    G    2091.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547356    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2124,163,0
12    56601237    rs703823    A    G    108.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548225    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
12    56601739    rs773663    G    T    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548225    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
12    56604416    rs10532115    GAT    G    551.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=102.7076;IndelType=D;MQ=47.12;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345093    GT:AD:DP:GQ:PL    1/1:2,14:16:42.14:593,42,0
12    56607927    rs4759218    C    T    1295.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345093    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1329,99,0
12    56625045    rs1274497    T    C    2207.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OBFC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267023    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2240,163,0
12    56629276    rs901073    A    C    4015.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.8;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267116    GT:AD:DP:GQ:PL    1/1:0,115:116:99:4016,307,0
12    56647911    rs808919    G    C    4995.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9254;MQ=59.7;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=S282;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56647851_56648063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD52;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267116    GT:AD:DP:GQ:PL    1/1:0,152:152:99:4995,397,0
12    56649601    rs1274490    A    G    284.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_AMINO_ACID_CHANGE=A143;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56649568_56649768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD52;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267116    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
12    56650742    rs1274491    C    T    437.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267116    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:470,36,0
12    56717466    rs773665    C    T    485.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547518    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:519,39,0
12    56722060    rs1918496    T    G    2945.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_AMINO_ACID_CHANGE=I179L;SNPEFF_CODON_CHANGE=Ata/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56722022_56722142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257931    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2979,220,0
12    56726518    rs2643626    G    A    3519.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257931    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3520,265,0
12    56812228    rs2643627    T    C    634.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.63;MQ0=0;QD=37.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555808    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:668,48,0
12    56812271    rs7134031    A    T    165.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555808    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
12    56814570    rs812279    T    G    647.50    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.012;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.819;QD=13.49;ReadPosRankSum=-0.117;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555808    GT:AD:DP:GQ:PL    0/1:23,25:48:99:677,0,677
12    56814653    rs2291739    G    A    803.92    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=64;Dels=0.0;FS=6.716;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-1.411;QD=12.56;ReadPosRankSum=-0.31;SNPEFF_AMINO_ACID_CHANGE=P1017L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56814597_56814665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:34,30:64:99:834,0,981
12    56814656    rs61376834    A    G    896.43    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=61;Dels=0.0;FS=14.005;HRun=3;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.038;QD=14.7;ReadPosRankSum=0.372;SNPEFF_AMINO_ACID_CHANGE=I1016T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56814597_56814665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:29,32:61:99:926,0,934
12    56815281    rs2291738    T    C    1434.44    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.63;DB;DP=93;Dels=0.0;FS=1.822;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.457;QD=15.42;ReadPosRankSum=-0.957;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555808    GT:AD:DP:GQ:PL    0/1:45,48:93:99:1464,0,1413
12    56815922    rs774047    C    T    708.99    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=2.961;DB;DP=45;Dels=0.0;FS=2.65;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.353;QD=15.76;ReadPosRankSum=-1.089;SNPEFF_AMINO_ACID_CHANGE=R830Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56815890_56815975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:17,28:45:99:739,0,417
12    56818982    rs12824030    G    C    143.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9923;MQ=60.0;MQ0=0;QD=17.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:176,15,0
12    56818983    rs35382350    C    CT    146.16    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;FS=0.0;HRun=3;HaplotypeScore=45.6039;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=18.27;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:3,5:8:70.07:185,0,70
12    56821998    rs774026    A    G    216.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.199;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.196;QD=10.81;ReadPosRankSum=1.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:12,8:20:99:246,0,290
12    56822378    rs774027    T    A    187.11    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=18;Dels=0.0;FS=2.029;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.906;QD=10.39;ReadPosRankSum=-0.091;SNPEFF_AMINO_ACID_CHANGE=I454L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56822333_56822436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:11,7:18:99:217,0,355
12    56822641    rs774028    G    C    681.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:714,51,0
12    56824163    rs774030    C    G    86.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
12    56825311    rs774033    C    T    570.21    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DB;DP=54;Dels=0.0;FS=1.148;HRun=0;HaplotypeScore=0.8321;MQ=58.27;MQ0=0;MQRankSum=2.315;QD=10.56;ReadPosRankSum=-1.065;SNPEFF_AMINO_ACID_CHANGE=V254;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56825255_56825388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:32,22:54:99:600,0,908
12    56825981    rs774039    A    G    68.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=7.6;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:5,3:9:98.39:98,0,189
12    56826061    rs774040    G    A    1273.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1306,99,0
12    56827694    rs2279665    C    G    670.68    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=0.547;DB;DP=74;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=2.7985;MQ=56.14;MQ0=0;MQRankSum=1.538;QD=8.94;ReadPosRankSum=0.651;SNPEFF_AMINO_ACID_CHANGE=L38;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56827557_56827710;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    0/1:47,27:74:99:701,0,1565
12    56827974    rs2638312    C    T    682.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.11;MQ0=0;QD=32.52;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_56827858_56828015;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMELESS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229201    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:716,54,0
12    56844970    rs2935008    A    C    525.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7987;MQ=58.55;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555551    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:558,45,0
12    56845296    rs2643622    T    C    1471.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8216;MQ=58.87;MQ0=0;QD=35.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555551    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1505,114,0
12    56845303    rs2088155    G    A    615.25    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.971;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.59;MQ0=0;MQRankSum=-0.534;QD=18.64;ReadPosRankSum=-0.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555551    GT:AD:DP:GQ:PL    0/1:13,20:33:99:645,0,389
12    56848481    rs2269348    T    C    451.77    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.263;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=20.53;ReadPosRankSum=-0.171;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555551    GT:AD:DP:GQ:PL    0/1:8,14:22:99:482,0,260
12    56862886    rs2657881    T    C    2062.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=M50T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56862823_56864763;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338146    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2095,172,0
12    56869577    rs5798384    C    CT    295.58    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=50.8267;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.228;QD=13.44;ReadPosRankSum=1.292;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GLS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471282    GT:AD:DP:GQ:PL    0/1:13,9:22:99:335,0,355
12    56871314    rs11171862    G    A    589.93    PASS    AB=0.227;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.548;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.392;QD=26.82;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GLS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471282    GT:AD:DP:GQ:PL    0/1:5,17:22:99:620,0,136
12    56872770    rs34646954    GA    G    79.22    QDFilter2    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.835;DB;DP=84;FS=0.0;HRun=20;HaplotypeScore=546.8045;IndelType=D;MQ=47.88;MQ0=0;MQRankSum=-0.023;QD=0.93;ReadPosRankSum=1.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GLS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471282    GT:AD:DP:GQ:PL    0/1:37,17:84:77.74:118,0,78
12    56915782    rs808929    G    A    694.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9452;MQ=34.57;MQ0=0;QD=21.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549945    GT:AD:DP:GQ:PL    1/1:0,32:33:66.16:728,66,0
12    56956213    rs3759091    T    C    1741.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=52.72;MQ0=2;QD=34.82;SNPEFF_AMINO_ACID_CHANGE=L27;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_56956201_56956367;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262031    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1774,132,0
12    56974785    rs7307755    A    G    327.20    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=20.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262031    GT:AD:DP:GQ:PL    0/1:5,11:16:99:357,0,141
12    56974915    rs76751511    G    A    1581.92    PASS    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=139;Dels=0.0;FS=3.845;HRun=0;HaplotypeScore=3.5737;MQ=59.67;MQ0=0;MQRankSum=-1.165;QD=11.38;ReadPosRankSum=1.928;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262031    GT:AD:DP:GQ:PL    0/1:79,59:139:99:1612,0,2426
12    56982290    rs2470385    C    T    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262031    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
12    57065713    rs2958154    C    T    301.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGES3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262033    GT:AD:DP:GQ:PL    1/1:0,13:13:27.08:334,27,0
12    57106660    rs4788    A    T    2547.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.228;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=33.52;ReadPosRankSum=-1.641;SNPEFF_AMINO_ACID_CHANGE=I102;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57106570_57106692;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000548563    GT:AD:DP:GQ:PL    1/1:1,75:76:99:2581,150,0
12    57106810    rs898609    G    A    2212.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.127;DB;DP=66;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.8321;MQ=59.37;MQ0=0;MQRankSum=0.522;QD=33.52;ReadPosRankSum=0.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546862    GT:AD:DP:GQ:PL    1/1:2,64:66:99:2245,129,0
12    57108203    rs4902    A    G    1098.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=I1922;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57108146_57108223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454682    GT:AD:DP:GQ:PL    1/1:0,34:34:87.27:1131,87,0
12    57109792    rs2958149    A    G    1527.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=L1841P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57109655_57115243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454682    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1561,120,0
12    57109931    rs2926747    A    T    703.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=28.14;SNPEFF_AMINO_ACID_CHANGE=S1795T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57109655_57115243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454682    GT:AD:DP:GQ:PL    1/1:0,24:25:60.15:736,60,0
12    57111939    rs56743414    T    G    337.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.9202;MQ=50.31;MQ0=0;QD=25.97;SNPEFF_AMINO_ACID_CHANGE=A1125;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57109655_57115243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454682    GT:AD:DP:GQ:PL    1/1:0,13:13:30.07:371,30,0
12    57111949    rs61032015    T    G    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=50.91;MQ0=0;QD=2.34;SNPEFF_AMINO_ACID_CHANGE=H1122P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57109655_57115243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454682    GT:AD:DP:GQ:PL    1/1:0,16:16:6.02:69,6,0
12    57112637    rs11171951    G    A    622.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=36.64;SNPEFF_AMINO_ACID_CHANGE=L893;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57109655_57115243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454682    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:656,51,0
12    57114100    rs2926743    A    G    1698.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=F405S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57109655_57115243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454682    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1732,138,0
12    57114307    rs2958127    A    T    1087.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=V336E;SNPEFF_CODON_CHANGE=gTg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57109655_57115243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454682    GT:AD:DP:GQ:PL    1/1:0,33:33:81.27:1121,81,0
12    57132186    rs63249160    AT    A    776.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=3;HaplotypeScore=71.4562;IndelType=D;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549549    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:819,66,0
12    57133140    rs1131514    T    G    2102.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_AMINO_ACID_CHANGE=I111;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57133078_57133147;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000549549    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2136,153,0
12    57137828    rs1026565    T    A    604.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546761    GT:AD:DP:GQ:PL    1/1:0,22:22:48.13:637,48,0
12    57139722    rs112047672    CA    C    286.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=16;HaplotypeScore=115.2693;IndelType=D;MQ=54.65;MQ0=0;QD=10.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546761    GT:AD:DP:GQ:PL    1/1:5,18:27:57.92:328,58,0
12    57140457    rs63023761    CACAA    C    316.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=164.0735;IndelType=D;MQ=58.45;MQ0=0;QD=16.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552408    GT:AD:DP:GQ:PL    1/1:7,12:19:32.64:358,33,0
12    57140506    rs2958130    G    A    1321.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.51;MQ0=0;QD=32.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552408    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1354,99,0
12    57146069    rs2277339    T    G    406.83    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=3.08;DB;DP=37;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.032;QD=11.0;ReadPosRankSum=0.225;SNPEFF_AMINO_ACID_CHANGE=D5A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57145980_57146119;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338193    GT:AD:DP:GQ:PL    0/1:22,15:37:99:437,0,677
12    57176089    rs3816616    C    G    107.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=17.95;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322165    GT:AD:DP:GQ:PL    0/1:2,4:6:60.52:138,0,61
12    57317903    rs7314055    A    G    175.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=11.68;ReadPosRankSum=0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDR9C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293502    GT:AD:DP:GQ:PL    0/1:9,6:15:99:205,0,319
12    57323388    rs7970701    C    G    434.17    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.275;DB;DP=33;Dels=0.0;FS=6.34;HRun=2;HaplotypeScore=1.7675;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=13.16;ReadPosRankSum=0.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDR9C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293502    GT:AD:DP:GQ:PL    0/1:17,15:33:99:464,0,468
12    57323523    rs840161    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDR9C7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293502    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    57432017    rs117611241    C    T    69.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.97;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476795    GT:AD:DP:GQ:PL    0/1:2,3:5:53.34:100,0,53
12    57464685    rs3217612    C    CA    778.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.746;DB;DP=46;FS=1.451;HRun=3;HaplotypeScore=94.8306;IndelType=I;MQ=60.44;MQ0=0;MQRankSum=-0.235;QD=16.93;ReadPosRankSum=-1.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM194A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300128    GT:AD:DP:GQ:PL    0/1:23,23:46:99:818,0,624
12    57486033    rs324020    A    C    46.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.74;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554718    GT:AD:DP:GQ:PL    0/1:1,3:4:29.55:77,0,30
12    57486647    rs324019    A    G    1350.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.201;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5773;MQ=59.46;MQ0=0;MQRankSum=-1.733;QD=31.42;ReadPosRankSum=0.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554718    GT:AD:DP:GQ:PL    1/1:1,42:43:91.07:1384,91,0
12    57492099    rs3024981    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300131    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    57492996    rs841718    G    A    1546.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300131    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1579,117,0
12    57493727    rs3024971    T    G    169.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.259;QD=14.16;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300131    GT:AD:DP:GQ:PL    0/1:6,6:12:99:200,0,201
12    57502182    rs324011    C    T    69.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.9;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300134    GT:AD:DP:GQ:PL    0/1:2,3:5:51.76:99,0,52
12    57559809    rs1800174    G    A    874.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.162;DB;DP=49;Dels=0.0;FS=13.49;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-1.121;QD=17.84;ReadPosRankSum=-0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:21,28:49:99:904,0,554
12    57561379    rs1800175    G    T    176.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=14.69;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556830    GT:AD:DP:GQ:PL    0/1:4,8:12:99:206,0,130
12    57567180    rs1800177    G    T    74.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.67;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553446    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,146
12    57567762    rs1800194    C    T    360.78    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.67;DB;DP=22;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=1.7337;MQ=60.0;MQ0=0;MQRankSum=1.088;QD=16.4;ReadPosRankSum=0.758;SNPEFF_AMINO_ACID_CHANGE=C1182;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57567563_57567763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:10,12:22:99:391,0,270
12    57569513    rs1800180    G    A    751.44    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.614;QD=18.79;ReadPosRankSum=-0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:17,23:40:99:781,0,507
12    57570014    rs11837145    C    A    74.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.0;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:105,0,69
12    57578288    rs1800181    C    T    174.48    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=14.54;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:5,7:12:99:204,0,171
12    57579177    rs6581126    A    G    117.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
12    57579727    rs1800182    A    T    178.74    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=14.89;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:5,7:12:99:209,0,154
12    57581028    rs6581127    C    G    480.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:513,39,0
12    57585144    rs1800139    C    T    169.23    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=17;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.151;QD=9.95;ReadPosRankSum=-0.754;SNPEFF_AMINO_ACID_CHANGE=A2426;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57585103_57585295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:11,6:17:99:199,0,379
12    57587437    rs34456957    T    C    279.88    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.339;DB;DP=30;Dels=0.0;FS=3.473;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-0.46;QD=9.33;ReadPosRankSum=1.046;SNPEFF_AMINO_ACID_CHANGE=C2591;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57587349_57587468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:17,13:30:99:310,0,514
12    57587839    rs1800187    C    T    151.48    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=7.16;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=11.65;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:6,7:13:99:181,0,154
12    57588049    rs7488264    A    G    273.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:306,27,0
12    57588977    rs76419181    CG    C    1045.09    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=3.437;DB;DP=71;FS=0.942;HRun=2;HaplotypeScore=201.4079;IndelType=D;MQ=59.66;MQ0=0;MQRankSum=1.18;QD=14.72;ReadPosRankSum=0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:37,34:71:99:1084,0,1216
12    57589659    rs1800154    C    T    427.07    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.937;DB;DP=23;Dels=0.0;FS=10.667;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=18.57;ReadPosRankSum=-0.936;SNPEFF_AMINO_ACID_CHANGE=C2858;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57589646_57589786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:8,15:23:99:457,0,258
12    57589784    rs7397167    A    C    889    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=27.78;SNPEFF_AMINO_ACID_CHANGE=Q2900P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57589646_57589786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    1/1:0,31:31:69.22:922,69,0
12    57589865    rs1800189    C    T    287.53    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.824;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.429;QD=12.5;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:13,10:23:99:318,0,414
12    57590735    rs7308552    T    C    129.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
12    57590758    rs1800191    C    T    104.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=10.42;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,171
12    57590797    rs1800156    C    T    101.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=8.46;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=D2975;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57590765_57590948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:8,4:12:99:131,0,243
12    57590869    rs7308698    T    C    1146.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_AMINO_ACID_CHANGE=T2999;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57590765_57590948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1179,87,0
12    57591226    rs1800165    T    C    869.68    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=0.313;DB;DP=79;Dels=0.0;FS=2.115;HRun=3;HaplotypeScore=0.8667;MQ=59.71;MQ0=0;MQRankSum=-0.621;QD=11.01;ReadPosRankSum=0.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:48,31:79:99:900,0,1657
12    57591458    rs1800166    C    T    176.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.002;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.161;QD=6.54;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:16,8:27:99:207,0,325
12    57593101    rs1140648    G    A    2052.09    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.882;DB;DP=160;Dels=0.0;FS=3.42;HRun=0;HaplotypeScore=5.4732;MQ=59.57;MQ0=0;MQRankSum=-1.01;QD=12.83;ReadPosRankSum=-0.615;SNPEFF_AMINO_ACID_CHANGE=T3261;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57592995_57593183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:87,73:160:99:2082,0,2460
12    57593894    rs1800159    A    G    70.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.83;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:3,3:6:96.95:101,0,97
12    57594955    rs11172124    G    A    614.64    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.95;MQ0=0;MQRankSum=1.157;QD=13.97;ReadPosRankSum=0.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555941    GT:AD:DP:GQ:PL    0/1:21,23:44:99:645,0,606
12    57595066    rs9669595    G    A    169.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=13.03;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555941    GT:AD:DP:GQ:PL    0/1:6,7:13:99:199,0,209
12    57595433    rs35292422    C    T    191.32    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=39;Dels=0.0;FS=1.547;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.242;QD=4.91;ReadPosRankSum=0.292;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555941    GT:AD:DP:GQ:PL    0/1:29,10:39:99:221,0,753
12    57600281    rs1800160    C    T    494.72    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.427;DB;DP=30;Dels=0.0;FS=3.622;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=16.49;ReadPosRankSum=0.787;SNPEFF_AMINO_ACID_CHANGE=I3872;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57600256_57600524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:11,18:30:99:525,0,292
12    57602815    rs7956957    C    G    224.66    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=19;Dels=0.0;FS=2.596;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.453;QD=11.82;ReadPosRankSum=0.906;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451724    GT:AD:DP:GQ:PL    0/1:7,12:19:99:255,0,196
12    57603277    rs6421185    C    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451724    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
12    57603417    rs1800162    A    G    317.22    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.037;DB;DP=22;Dels=0.0;FS=2.881;HRun=1;HaplotypeScore=1.5782;MQ=59.15;MQ0=0;MQRankSum=-0.444;QD=14.42;ReadPosRankSum=0.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451724    GT:AD:DP:GQ:PL    0/1:8,14:22:99:347,0,275
12    57604802    rs1800164    A    G    58.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=11.67;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:88,0,67
12    57605168    rs10783814    T    C    755.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243077    GT:AD:DP:GQ:PL    1/1:0,26:26:66.18:788,66,0
12    57606386    rs7304504    A    G    479.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556356    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:512,39,0
12    57618619    rs61736007    G    A    59.30    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=4.94;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXPH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349394    GT:AD:DP:GQ:PL    0/1:7,4:12:89.29:89,0,228
12    57619209    rs7979061    C    G    327.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_AMINO_ACID_CHANGE=P202;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57618661_57620232;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXPH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349394    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:361,30,0
12    57619362    rs10783816    G    A    395.47    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=20;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.127;QD=19.77;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=P253;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57618661_57620232;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXPH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349394    GT:AD:DP:GQ:PL    0/1:7,13:20:99:425,0,190
12    57619589    rs7979451    C    T    224.63    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=21;Dels=0.0;FS=11.326;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.152;QD=10.7;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXPH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555154    GT:AD:DP:GQ:PL    0/1:11,10:21:99:255,0,347
12    57637593    rs3204635    G    A    329.06    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=17.32;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553489    GT:AD:DP:GQ:PL    0/1:8,11:19:99:359,0,215
12    57639190    rs7139342    C    T    86.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=R3HDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413953    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
12    57649120    rs6421186    A    G    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=R3HDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546843    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
12    57649840    rs4075325    C    T    1877.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7882;MQ=58.86;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=K253;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57649797_57649926;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=R3HDM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000548161    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1911,144,0
12    57652963    rs6581131    G    A    414.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=37.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=R3HDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347140    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:448,33,0
12    57662563    rs10783818    T    C    382.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=R3HDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347140    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:415,30,0
12    57693060    rs4760126    G    A    1119.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=R3HDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347140    GT:AD:DP:GQ:PL    1/1:0,33:33:87.26:1152,87,0
12    57704005    rs67954115    GA    G    1061.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=52;FS=0.0;HRun=11;HaplotypeScore=150.9851;IndelType=D;MQ=61.44;MQ0=0;MQRankSum=-0.65;QD=20.41;ReadPosRankSum=-1.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=R3HDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448732    GT:AD:DP:GQ:PL    1/1:5,46:52:99:1104,111,0
12    57829129    rs560048    C    T    71.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=23.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INHBC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309668    GT:AD:DP:GQ:PL    1/1:0,3:3:9:104,9,0
12    57843014    rs776037    C    T    8097.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.112;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.3712;MQ=59.83;MQ0=0;MQRankSum=-1.605;QD=32.39;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INHBC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309668    GT:AD:DP:GQ:PL    1/1:1,249:250:99:8098,567,0
12    57843711    rs2229357    G    A    781.97    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=47;Dels=0.0;FS=4.086;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.161;QD=16.64;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=R322Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57843060_57844611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INHBC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309668    GT:AD:DP:GQ:PL    0/1:20,27:47:99:812,0,586
12    57849768    rs507562    C    G    1429.67    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.655;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5184;MQ=59.17;MQ0=0;MQRankSum=-1.847;QD=17.02;ReadPosRankSum=0.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INHBC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550133    GT:AD:DP:GQ:PL    0/1:35,49:84:99:1460,0,985
12    57857354    rs10876987    T    C    234.19    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.608;QD=16.73;ReadPosRankSum=0.865;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INHBE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551553    GT:AD:DP:GQ:PL    0/1:6,8:14:99:264,0,186
12    57858414    rs3817475    A    G    275.53    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.023;DB;DP=19;Dels=0.0;FS=6.419;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.95;QD=14.5;ReadPosRankSum=-1.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228682    GT:AD:DP:GQ:PL    0/1:8,11:19:99:306,0,282
12    57858835    rs3817474    G    A    888.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.311;DB;DP=50;Dels=0.0;FS=5.076;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.094;QD=17.76;ReadPosRankSum=0.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528432    GT:AD:DP:GQ:PL    0/1:21,28:50:99:918,0,614
12    57859431    rs2228225    G    A    571.53    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.571;DB;DP=50;Dels=0.0;FS=1.628;HRun=1;HaplotypeScore=1.4105;MQ=59.07;MQ0=0;MQRankSum=0.952;QD=11.43;ReadPosRankSum=-0.351;SNPEFF_AMINO_ACID_CHANGE=E151;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57859390_57859479;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528467    GT:AD:DP:GQ:PL    0/1:27,23:50:99:602,0,835
12    57859932    rs2292657    G    A    1098.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.897;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5925;MQ=59.7;MQ0=0;MQRankSum=-1.092;QD=14.45;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527742    GT:AD:DP:GQ:PL    0/1:38,38:76:99:1129,0,1029
12    57865321    rs2228224    G    A    945.41    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.528;DB;DP=75;Dels=0.0;FS=2.01;HRun=0;HaplotypeScore=1.6918;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=12.61;ReadPosRankSum=1.698;SNPEFF_AMINO_ACID_CHANGE=G401D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57865044_57865844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443131    GT:AD:DP:GQ:PL    0/1:41,34:75:99:975,0,1254
12    57865821    rs2228226    G    C    891.36    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.012;DB;DP=56;Dels=0.0;FS=1.462;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.557;QD=15.92;ReadPosRankSum=-0.752;SNPEFF_AMINO_ACID_CHANGE=E1059Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57864100_57865842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528467    GT:AD:DP:GQ:PL    0/1:25,31:56:99:921,0,752
12    57865928    rs474058    A    C    237.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340423    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:271,21,0
12    57867726    rs532993    A    G    83.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546704    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
12    57869241    rs527226    T    C    140.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=20.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547200    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:173,15,0
12    57869447    rs2277318    T    C    41.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8824;MQ=49.17;MQ0=0;MQRankSum=0.988;QD=5.93;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547200    GT:AD:DP:GQ:PL    0/1:4,3:7:71.49:71,0,86
12    57869476    rs2277317    G    A    80.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.55;QD=10.05;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547200    GT:AD:DP:GQ:PL    0/1:4,4:8:59.73:110,0,60
12    57869486    rs2277316    A    G    56.98    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=54.65;MQ0=0;MQRankSum=1.638;QD=6.33;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547200    GT:AD:DP:GQ:PL    0/1:5,4:9:86.98:87,0,138
12    57869500    rs524522    A    C    314.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547200    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:347,27,0
12    57869582    rs2277315    T    C    150    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=14;Dels=0.0;FS=5.756;HRun=1;HaplotypeScore=1.9924;MQ=56.62;MQ0=0;MQRankSum=1.954;QD=10.71;ReadPosRankSum=0.555;SNPEFF_AMINO_ACID_CHANGE=T449A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57869559_57869714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356411    GT:AD:DP:GQ:PL    0/1:8,6:14:99:180,0,216
12    57870121    rs486699    A    C    619.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547216    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:652,51,0
12    57870155    rs11544238    A    C    327.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.049;DB;DP=27;Dels=0.0;FS=6.648;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.147;QD=12.13;ReadPosRankSum=0.512;SNPEFF_AMINO_ACID_CHANGE=S186A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57870147_57870237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430041    GT:AD:DP:GQ:PL    0/1:15,12:27:99:358,0,343
12    57870463    rs10706671    AG    A    970.86    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=4.371;DB;DP=55;FS=0.0;HRun=1;HaplotypeScore=138.9167;IndelType=D;MQ=60.39;MQ0=0;MQRankSum=-0.511;QD=17.65;ReadPosRankSum=-2.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547216    GT:AD:DP:GQ:PL    0/1:27,28:55:99:1010,0,1073
12    57870648    rs512490    A    G    962.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547216    GT:AD:DP:GQ:PL    1/1:0,31:32:72.24:996,72,0
12    57871555    rs3825080    A    G    44.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=8.99;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_12_57871242_57871567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000551452    GT:AD:DP:GQ:PL    0/1:2,3:5:57.53:75,0,58
12    57872720    rs542278    G    A    312.35    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.879;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=18.37;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340423    GT:AD:DP:GQ:PL    0/1:7,10:17:99:342,0,188
12    57873042    rs33927108    T    C    943.66    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.349;DB;DP=65;Dels=0.0;FS=6.73;HRun=2;HaplotypeScore=3.1614;MQ=59.65;MQ0=0;MQRankSum=-0.685;QD=14.52;ReadPosRankSum=1.021;SNPEFF_AMINO_ACID_CHANGE=R121G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57872874_57873207;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393797    GT:AD:DP:GQ:PL    0/1:33,32:65:99:974,0,1094
12    57883801    rs899653    G    A    1063.89    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.062;DB;DP=65;Dels=0.0;FS=2.743;HRun=0;HaplotypeScore=0.9332;MQ=59.65;MQ0=0;MQRankSum=1.999;QD=16.37;ReadPosRankSum=-1.874;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546481    GT:AD:DP:GQ:PL    0/1:30,35:65:99:1094,0,863
12    57891804    rs537161    T    C    382.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262027    GT:AD:DP:GQ:PL    1/1:0,14:14:33.08:415,33,0
12    57905687    rs1284467    A    G    692.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346473    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:726,54,0
12    57911160    rs697221    G    A    582.64    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.567;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=13.87;ReadPosRankSum=-0.227;SNPEFF_AMINO_ACID_CHANGE=F10;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57911052_57911221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDIT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346473    GT:AD:DP:GQ:PL    0/1:19,23:42:99:613,0,560
12    57918634    rs1148555    A    G    592.49    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.432;DB;DP=47;Dels=0.0;FS=2.683;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.178;QD=12.61;ReadPosRankSum=1.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546632    GT:AD:DP:GQ:PL    0/1:27,19:47:99:622,0,876
12    57919107    rs1148554    C    T    331.91    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=26;Dels=0.0;FS=4.559;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.026;QD=12.77;ReadPosRankSum=0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434715    GT:AD:DP:GQ:PL    0/1:14,12:26:99:362,0,430
12    57920262    rs2127318    T    G    511.53    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.289;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.33;QD=10.23;ReadPosRankSum=-0.707;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354743    GT:AD:DP:GQ:PL    0/1:29,21:50:99:542,0,844
12    57921188    rs1284605    C    T    485.49    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.445;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.417;QD=20.23;ReadPosRankSum=0.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354743    GT:AD:DP:GQ:PL    0/1:9,15:24:99:515,0,295
12    57922363    rs2620679    A    G    685.79    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.947;DB;DP=47;Dels=0.0;FS=2.649;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.053;QD=14.59;ReadPosRankSum=-0.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354743    GT:AD:DP:GQ:PL    0/1:23,24:47:99:716,0,709
12    57926472    rs703837    G    A    2114.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.384;DB;DP=148;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.8804;MQ=59.69;MQ0=0;MQRankSum=1.94;QD=14.28;ReadPosRankSum=1.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546670    GT:AD:DP:GQ:PL    0/1:74,74:148:99:2144,0,2348
12    57927553    rs34012531    CA    C    85.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=16;FS=0.0;HRun=16;HaplotypeScore=138.275;IndelType=D;MQ=52.93;MQ0=0;MQRankSum=-0.354;QD=5.33;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546965    GT:AD:DP:GQ:PL    0/1:7,8:16:48.96:124,0,49
12    57958313    rs775322    A    G    1177.25    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=78;Dels=0.01;FS=1.334;HRun=2;HaplotypeScore=7.159;MQ=59.71;MQ0=0;MQRankSum=-0.204;QD=14.9;ReadPosRankSum=-0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286452    GT:AD:DP:GQ:PL    0/1:38,37:78:99:1207,0,1187
12    57961494    rs10783832    T    C    68.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.231;QD=11.49;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286452    GT:AD:DP:GQ:PL    0/1:2,4:6:68.47:99,0,68
12    57968738    rs11172254    G    A    85.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286452    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
12    57975155    rs775246    A    C    349.48    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.031;QD=14.56;ReadPosRankSum=-0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286452    GT:AD:DP:GQ:PL    0/1:11,13:24:99:379,0,355
12    57975570    rs775247    A    G    668.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286452    GT:AD:DP:GQ:PL    1/1:0,21:21:60.16:701,60,0
12    57976168    rs809593    G    A    255.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286452    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:288,24,0
12    57977003    rs775249    C    T    214.13    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=17.84;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552227    GT:AD:DP:GQ:PL    0/1:5,7:12:99:244,0,117
12    57977040    rs775250    C    A    163.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=18.2;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552227    GT:AD:DP:GQ:PL    0/1:3,6:9:96.80:194,0,97
12    57994743    rs775235    T    G    2723.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.1039;MQ=59.7;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=L273;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57994594_57994861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422156    GT:AD:DP:GQ:PL    1/1:0,77:78:99:2756,217,0
12    57995089    rs812873    T    C    2224.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=A333;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_57995028_57995131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422156    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2257,166,0
12    58000378    rs703834    G    A    426.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6646;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550596    GT:AD:DP:GQ:PL    1/1:1,14:15:36.10:459,36,0
12    58003922    rs10437954    G    A    55.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337737    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
12    58004288    rs117150132    A    G    126.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=12.69;ReadPosRankSum=-1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337737    GT:AD:DP:GQ:PL    0/1:5,5:10:99:157,0,175
12    58004563    rs7314872    C    G    200.56    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=22.28;ReadPosRankSum=0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337737    GT:AD:DP:GQ:PL    0/1:2,7:9:48.75:231,0,49
12    58005682    rs60586224    G    A    409.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=R2Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58005218_58005774;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286494    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:442,36,0
12    58007678    rs7305391    G    A    841.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337737    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:874,66,0
12    58008952    rs703833    C    T    418.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484357    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:452,33,0
12    58009372    rs2277323    G    A    343.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=21;Dels=0.0;FS=10.942;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.244;QD=16.33;ReadPosRankSum=0.036;SNPEFF_AMINO_ACID_CHANGE=L220;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58009295_58009488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300189    GT:AD:DP:GQ:PL    0/1:9,12:21:99:373,0,299
12    58010163    rs1564374    A    G    480.12    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.297;DB;DP=30;Dels=0.0;FS=1.723;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=16.0;ReadPosRankSum=-2.009;SNPEFF_AMINO_ACID_CHANGE=Q506R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58010067_58010278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286494    GT:AD:DP:GQ:PL    0/1:13,17:30:99:510,0,442
12    58015494    rs923828    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=A193T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58015473_58015625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320442    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
12    58019472    rs774895    T    G    535.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC26A10;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000474359    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:569,42,0
12    58020360    rs35831868    A    G    107.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=12;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.9665;MQ=56.43;MQ0=0;MQRankSum=0.296;QD=8.99;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300189    GT:AD:DP:GQ:PL    0/1:4,8:12:97.83:138,0,98
12    58022074    rs12322482    G    A    387.25    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.476;DB;DP=30;Dels=0.0;FS=4.228;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.644;QD=12.91;ReadPosRankSum=0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300189    GT:AD:DP:GQ:PL    0/1:14,16:30:99:417,0,453
12    58023981    rs715930    C    A    352.09    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=31;Dels=0.0;FS=1.455;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=11.36;ReadPosRankSum=0.456;SNPEFF_AMINO_ACID_CHANGE=L167;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58023935_58024115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=B4GALNT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418555    GT:AD:DP:GQ:PL    0/1:16,15:31:99:382,0,471
12    58024626    rs703832    G    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=B4GALNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    58025813    rs774896    G    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_AMINO_ACID_CHANGE=L35V;SNPEFF_CODON_CHANGE=Cta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58025698_58025916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=B4GALNT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341156    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
12    58087737    rs4760168    T    G    54.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=6.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257966    GT:AD:DP:GQ:PL    1/1:0,8:8:9.01:87,9,0
12    58089413    rs3825078    A    T    38.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549897    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
12    58112189    rs799265    A    G    613.05    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=41;Dels=0.0;FS=1.283;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;MQRankSum=-0.352;QD=14.95;ReadPosRankSum=0.926;SNPEFF_AMINO_ACID_CHANGE=E158;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58112119_58112204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OS9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547079    GT:AD:DP:GQ:PL    0/1:20,21:41:99:643,0,532
12    58113125    rs799266    A    G    194.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547079    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:227,18,0
12    58124534    rs2301551    C    G    278.70    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.8;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.831;QD=12.12;ReadPosRankSum=-1.816;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-571M6.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542466    GT:AD:DP:GQ:PL    0/1:11,12:23:99:309,0,362
12    58124803    rs238523    C    T    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-571M6.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542466    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
12    58127766    rs238526    T    C    457.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257897    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:490,36,0
12    58135659    rs238530    T    C    1601.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257897    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1635,126,0
12    58142854    rs2069506    C    A    412.74    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.511;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.084;QD=13.76;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547281    GT:AD:DP:GQ:PL    0/1:17,13:30:99:443,0,617
12    58144665    rs2069502    C    T    649.44    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=0.845;DB;DP=56;Dels=0.0;FS=1.075;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.213;QD=11.6;ReadPosRankSum=0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547853    GT:AD:DP:GQ:PL    0/1:33,23:56:99:679,0,1035
12    58145156    rs2270777    C    T    729.28    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.594;DB;DP=65;Dels=0.0;FS=0.991;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.303;QD=11.22;ReadPosRankSum=-0.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547853    GT:AD:DP:GQ:PL    0/1:34,31:65:99:759,0,1150
12    58149446    rs1689582    C    T    107.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=21.46;SNPEFF_AMINO_ACID_CHANGE=G45;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58148881_58149668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266643    GT:AD:DP:GQ:PL    1/1:0,4:5:12.03:140,12,0
12    58157988    rs4646536    A    G    601.01    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.25;DB;DP=42;Dels=0.0;FS=2.864;HRun=0;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=1.166;QD=14.31;ReadPosRankSum=0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP27B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546496    GT:AD:DP:GQ:PL    0/1:21,20:42:99:631,0,591
12    58162739    rs703842    A    G    267.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.554;DB;DP=36;Dels=0.0;FS=8.237;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.587;QD=7.43;ReadPosRankSum=0.554;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548681    GT:AD:DP:GQ:PL    0/1:24,12:36:99:297,0,778
12    58166403    rs2291617    T    G    80.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.14;MQ0=0;MQRankSum=-1.38;QD=13.42;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548256    GT:AD:DP:GQ:PL    0/1:2,4:6:59.60:111,0,60
12    58174306    rs923829    T    C    296.17    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-2.051;QD=14.81;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=H186;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58174038_58176186;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300209    GT:AD:DP:GQ:PL    0/1:9,11:20:99:326,0,272
12    58176614    rs10747783    T    C    63.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.406;QD=9.03;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=F10;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58176559_58176641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSFM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323833    GT:AD:DP:GQ:PL    0/1:3,4:7:93.18:93,0,106
12    58176797    rs11614185    A    G    298.24    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.169;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=15.7;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300209    GT:AD:DP:GQ:PL    0/1:7,12:19:99:328,0,231
12    58186594    rs56261123    C    T    104.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.42;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537081    GT:AD:DP:GQ:PL    0/1:2,4:6:57.09:135,0,57
12    58186595    rs4631925    A    G    188.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537081    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:222,18,0
12    58193448    rs11172344    T    C    270.49    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=58.84;MQ0=0;MQRankSum=-0.041;QD=13.52;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550083    GT:AD:DP:GQ:PL    0/1:10,9:20:99:300,0,332
12    58202419    rs2277326    C    A    30.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.07;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549994    GT:AD:DP:GQ:PL    0/1:4,2:6:60.39:60,0,137
12    58203354    rs3825079    C    T    548.98    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=36;Dels=0.0;FS=2.181;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=15.25;ReadPosRankSum=1.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549994    GT:AD:DP:GQ:PL    0/1:19,17:36:99:579,0,598
12    58204283    rs2172521    T    C    1996.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=K197E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58204132_58204334;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AVIL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537081    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2029,153,0
12    58204430    rs3216741    T    TA    474.34    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.078;DB;DP=21;FS=0.0;HRun=1;HaplotypeScore=50.8748;IndelType=I;MQ=59.42;MQ0=0;MQRankSum=1.412;QD=22.59;ReadPosRankSum=1.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AVIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549994    GT:AD:DP:GQ:PL    0/1:8,13:21:99:513,0,249
12    58335626    rs3751325    A    T    410.37    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.488;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.4;MQ0=0;MQRankSum=0.961;QD=10.01;ReadPosRankSum=-0.961;SNPEFF_AMINO_ACID_CHANGE=S48C;SNPEFF_CODON_CHANGE=Agc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58335360_58335671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XRCC6BP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300145    GT:AD:DP:GQ:PL    0/1:23,18:41:99:440,0,694
12    58350631    rs10122    C    T    762.84    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.13;DB;DP=55;Dels=0.0;FS=8.518;HRun=0;HaplotypeScore=0.9992;MQ=59.58;MQ0=0;MQRankSum=-0.772;QD=13.87;ReadPosRankSum=0.144;SNPEFF_AMINO_ACID_CHANGE=H233;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_58350470_58351052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XRCC6BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300145    GT:AD:DP:GQ:PL    0/1:31,24:55:99:793,0,1003
12    59279660    rs11172796    A    T    2320.78    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=2.504;DB;DP=183;DS;Dels=0.0;FS=7.188;HRun=0;HaplotypeScore=2.566;MQ=59.68;MQ0=0;MQRankSum=-0.004;QD=12.68;ReadPosRankSum=-1.32;SNPEFF_AMINO_ACID_CHANGE=R339;SNPEFF_CODON_CHANGE=cgT/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_59279613_59279684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379141    GT:AD:DP:GQ:PL    0/1:101,81:183:99:2351,0,3195
12    59313151    rs12426955    G    T    235.34    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.991;DB;DP=25;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.897;QD=9.41;ReadPosRankSum=-0.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320743    GT:AD:DP:GQ:PL    0/1:16,9:25:99:265,0,470
12    59313248    rs12426969    G    A    594.53    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.485;DB;DP=57;Dels=0.0;FS=7.215;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.295;QD=10.43;ReadPosRankSum=-0.185;SNPEFF_AMINO_ACID_CHANGE=L6;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_59313208_59313327;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRIG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379141    GT:AD:DP:GQ:PL    0/1:32,25:57:99:625,0,946
12    60165271    rs2711659    A    G    351.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.424;QD=17.57;ReadPosRankSum=-0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546459    GT:AD:DP:GQ:PL    0/1:8,12:20:99:381,0,277
12    60173356    rs3763980    A    T    158.17    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=19;Dels=0.0;FS=7.425;HRun=0;HaplotypeScore=1.367;MQ=58.78;MQ0=0;MQRankSum=-0.041;QD=8.32;ReadPosRankSum=-2.106;SNPEFF_AMINO_ACID_CHANGE=T346S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_60173204_60173477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543448    GT:AD:DP:GQ:PL    0/1:11,8:19:99:188,0,276
12    62104219    rs7399207    A    C    3295.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.57;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416284    GT:AD:DP:GQ:PL    1/1:0,95:96:99:3296,238,0
12    62104436    rs7398155    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    62114671    rs7485027    T    C    1713.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416284    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1747,132,0
12    62261410    rs3759287    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    62696599    rs11174420    C    T    940.17    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.69;DB;DP=59;Dels=0.0;FS=3.586;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.417;QD=15.94;ReadPosRankSum=0.19;SNPEFF_AMINO_ACID_CHANGE=H28;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_62696571_62696701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000548836    GT:AD:DP:GQ:PL    0/1:29,30:59:99:970,0,885
12    62708442    rs10877825    G    A    1740.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280377    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1773,132,0
12    62715412    rs111666891    CTGTAT    C    762.70    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=4.462;DB;DP=36;FS=5.538;HRun=0;HaplotypeScore=192.2476;IndelType=D;MQ=56.39;MQ0=1;MQRankSum=-0.96;QD=20.61;ReadPosRankSum=0.623;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548836    GT:AD:DP:GQ:PL    0/1:23,14:36:99:802,0,1886
12    62729222    rs2242032    G    C    117.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280377    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
12    62778065    rs2044846    A    G    266.83    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.205;DB;DP=27;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.263;QD=9.88;ReadPosRankSum=-1.786;SNPEFF_AMINO_ACID_CHANGE=P456;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_62777859_62778083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353364    GT:AD:DP:GQ:PL    0/1:14,10:27:99:297,0,441
12    62785537    rs3213984    A    G    96.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.04;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549268    GT:AD:DP:GQ:PL    0/1:4,4:8:99:126,0,147
12    62785663    rs11174457    T    C    414.49    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.486;DB;DP=33;Dels=0.0;FS=7.791;HRun=1;HaplotypeScore=0.734;MQ=59.43;MQ0=0;MQRankSum=-0.018;QD=12.56;ReadPosRankSum=-2.143;SNPEFF_AMINO_ACID_CHANGE=A738;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_62785596_62785666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353364    GT:AD:DP:GQ:PL    0/1:16,17:33:99:444,0,499
12    62861111    rs6581450    T    C    517.55    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.902;DB;DP=34;Dels=0.0;FS=2.553;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=15.22;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:14,20:34:99:548,0,467
12    62883990    rs11393430    C    CT    352.23    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=41.1182;IndelType=I;MQ=59.92;MQ0=0;MQRankSum=-0.38;QD=22.01;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:6,10:16:99:391,0,186
12    62887938    rs11174512    C    T    227.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.835;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.95;ReadPosRankSum=-1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549286    GT:AD:DP:GQ:PL    0/1:4,8:12:80.71:257,0,81
12    62888729    rs7135893    C    T    96.26    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=14;Dels=0.0;FS=4.472;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=6.88;ReadPosRankSum=-1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549286    GT:AD:DP:GQ:PL    0/1:9,5:14:99:126,0,325
12    62892905    rs4025987    C    G    1181.58    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.023;DB;DP=72;Dels=0.0;FS=3.204;HRun=0;HaplotypeScore=1.7262;MQ=59.48;MQ0=0;MQRankSum=0.101;QD=16.41;ReadPosRankSum=-0.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:35,37:72:99:1212,0,1170
12    62926398    rs7957417    G    A    896.86    PASS    AB=0.325;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=40;Dels=0.0;FS=14.74;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.173;QD=22.42;ReadPosRankSum=-3.234;SNPEFF_AMINO_ACID_CHANGE=S455;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_62926218_62926450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:13,27:40:99:927,0,374
12    62928633    rs10219555    G    A    763.89    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.361;DB;DP=54;Dels=0.0;FS=9.25;HRun=0;HaplotypeScore=1.99;MQ=60.0;MQ0=0;MQRankSum=-0.97;QD=14.15;ReadPosRankSum=-0.24;SNPEFF_AMINO_ACID_CHANGE=A476T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_62928625_62928706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:27,26:54:99:794,0,853
12    62928747    rs11364534    TA    T    1028.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=8;HaplotypeScore=131.6718;IndelType=D;MQ=60.22;MQ0=0;QD=23.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    1/1:6,38:44:99:1071,111,0
12    62930798    rs7134302    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
12    62931846    rs67298711    ATTTGT    A    458.76    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.937;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=120.2435;IndelType=D;MQ=56.86;MQ0=0;MQRankSum=-0.661;QD=19.95;ReadPosRankSum=0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:14,9:23:99:498,0,1175
12    62943371    rs10877874    G    A    83.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=8.36;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:6,4:10:99:114,0,167
12    62965149    rs2270732    T    C    1268.33    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=0.879;DB;DP=84;Dels=0.0;FS=5.062;HRun=0;HaplotypeScore=1.6553;MQ=59.73;MQ0=0;MQRankSum=-1.662;QD=15.1;ReadPosRankSum=-0.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:42,41:84:99:1298,0,1324
12    62972210    rs5798648    G    GT    174.30    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=25;FS=0.0;HRun=12;HaplotypeScore=101.4438;IndelType=I;MQ=59.07;MQ0=0;MQRankSum=-0.189;QD=6.97;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261188    GT:AD:DP:GQ:PL    0/1:14,9:25:99:213,0,144
12    62981993    rs150301464    G    A    252.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.111;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=58.71;MQ0=0;MQRankSum=-0.933;QD=14.01;ReadPosRankSum=1.288;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546751    GT:AD:DP:GQ:PL    0/1:10,8:18:99:282,0,281
12    62986620    rs12357    G    A    271.89    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.346;QD=11.82;ReadPosRankSum=2.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280379    GT:AD:DP:GQ:PL    0/1:14,9:23:99:302,0,481
12    63359011    rs699595    A    T    595.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=29.79;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL14P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266610    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:629,51,0
12    63359549    rs143590555    ACTGCTG    A    1711.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=0;HaplotypeScore=359.752;IndelType=D;MQ=30.95;MQ0=5;QD=24.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL14P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266610    GT:AD:DP:GQ:PL    1/1:37,32:59:84.29:1754,84,0
12    63543549    .    TTTTC    T    569.61    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=3.101;DP=25;FS=0.0;HRun=0;HaplotypeScore=202.4228;IndelType=D;MQ=46.47;MQ0=0;MQRankSum=-3.041;QD=22.78;ReadPosRankSum=-2.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AVPR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299178    GT:AD:DP:GQ:PL    0/1:9,14:25:99:609,0,310
12    63543578    rs10784341    T    A    186.62    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.074;DB;DP=32;Dels=0.0;FS=3.038;HRun=0;HaplotypeScore=2.7882;MQ=49.53;MQ0=0;MQRankSum=-0.499;QD=5.83;ReadPosRankSum=0.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AVPR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299178    GT:AD:DP:GQ:PL    0/1:13,19:32:99:217,0,313
12    63544209    rs1042615    A    G    240.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=18;Dels=0.0;FS=10.843;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.618;QD=13.37;ReadPosRankSum=-0.265;SNPEFF_AMINO_ACID_CHANGE=F136;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_63543647_63544722;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AVPR1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299178    GT:AD:DP:GQ:PL    0/1:9,9:18:99:271,0,315
12    63954300    rs12314553    C    T    1049.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9663;MQ=59.0;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=V204I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_63953976_63954442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413230    GT:AD:DP:GQ:PL    1/1:0,32:32:78.26:1082,78,0
12    63954304    rs1054891    T    C    1052.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.473;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.94;MQ0=0;MQRankSum=0.683;QD=31.91;ReadPosRankSum=-0.998;SNPEFF_AMINO_ACID_CHANGE=L202;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_63953976_63954442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413230    GT:AD:DP:GQ:PL    1/1:1,32:33:81.26:1086,81,0
12    63962886    .    GATA    G    1000.67    PASS    AC=2;AF=1.00;AN=2;DP=21;FS=0.0;HRun=0;HaplotypeScore=99.6992;IndelType=D;MQ=45.3;MQ0=0;QD=45.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324472    GT:AD:DP:GQ:PL    1/1:0,22:21:63.22:1043,63,0
12    64014905    rs11175075    A    G    48.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.82;MQ0=2;QD=9.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324472    GT:AD:DP:GQ:PL    1/1:1,4:5:9:81,9,0
12    64020120    rs4763095    T    A    96.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.68;MQ0=0;QD=24.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324472    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:129,12,0
12    64020330    rs7310033    C    T    299.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.6986;MQ=39.17;MQ0=0;QD=27.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324472    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:332,27,0
12    64038351    rs61936119    C    T    427.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=40.68;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324472    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:460,39,0
12    64038369    rs3857741    A    G    361.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.52;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324472    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:394,33,0
12    64055269    rs55665893    T    A    1535.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=25.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324472    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1569,153,0
12    64055347    rs112964973    G    GA    321.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=12;HaplotypeScore=56.9801;IndelType=I;MQ=59.24;MQ0=0;QD=20.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324472    GT:AD:DP:GQ:PL    1/1:3,10:16:41.58:364,42,0
12    64057703    rs140336786    TA    T    181.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=6;HaplotypeScore=20.6804;IndelType=D;MQ=55.97;MQ0=0;QD=20.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542209    GT:AD:DP:GQ:PL    1/1:0,9:7:21.05:223,21,0
12    64173807    rs61935924    G    A    135.23    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=7.12;ReadPosRankSum=0.803;SNPEFF_AMINO_ACID_CHANGE=A23T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_64173583_64173909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261234    GT:AD:DP:GQ:PL    0/1:12,7:19:99:165,0,327
12    64383509    rs3741606    A    G    98.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355086    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:131,12,0
12    64383670    rs3741607    T    C    895.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355086    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:929,69,0
12    64472803    rs789710    A    T    2692.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=52.71;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=S370;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_64472699_64472896;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543397    GT:AD:DP:GQ:PL    1/1:1,83:84:99:2726,211,0
12    64485593    rs74804240    A    ACC    1349.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=1;HaplotypeScore=52.3757;IndelType=I;MQ=60.9;MQ0=0;QD=56.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355086    GT:AD:DP:GQ:PL    1/1:0,24:24:72.25:1392,72,0
12    64587633    rs699638    C    A    921.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.574;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=A390S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_64586419_64588438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544871    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:954,69,0
12    64588565    rs789721    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311915    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    64609562    rs2335390    C    T    693    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=M139I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_64609458_64609743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311915    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:726,54,0
12    64661209    rs1657057    A    C    123.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541802    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:157,15,0
12    64661210    rs1657058    T    C    123.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541802    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:157,15,0
12    64664211    rs1865791    T    C    240.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541613    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:274,21,0
12    64664674    rs1978794    A    G    215.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541613    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
12    64668891    rs2010893    G    A    388.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:421,33,0
12    64668948    rs2010889    G    A    287.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
12    64669018    rs5798743    AT    A    461.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=44.9104;IndelType=D;MQ=60.0;MQ0=0;QD=38.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:504,36,0
12    64669090    rs1002392    C    A    883.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_AMINO_ACID_CHANGE=L339;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_64669078_64669152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:917,69,0
12    64669270    rs10878132    C    G    429.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:0,13:13:36.07:462,36,0
12    64680016    rs7974953    C    A    201.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
12    64697635    rs10878142    T    G    624.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:657,48,0
12    64724531    rs6581540    T    C    88.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
12    64724815    rs11392869    T    TA    1202.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=10;HaplotypeScore=154.4197;IndelType=I;MQ=59.85;MQ0=0;QD=22.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    1/1:12,41:53:99:1244,117,0
12    64746924    rs11434916    GT    G    227.97    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=3.018;DB;DP=51;FS=0.0;HRun=10;HaplotypeScore=155.3872;IndelType=D;MQ=59.85;MQ0=0;MQRankSum=0.447;QD=4.47;ReadPosRankSum=1.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333722    GT:AD:DP:GQ:PL    0/1:36,15:51:99:267,0,739
12    64833249    rs10878172    A    G    35.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=8.77;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPOT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332707    GT:AD:DP:GQ:PL    0/1:2,2:4:65.07:65,0,72
12    64838922    rs6581565    G    T    535.36    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.063;DB;DP=54;Dels=0.0;FS=2.623;HRun=3;HaplotypeScore=0.0;MQ=57.83;MQ0=0;MQRankSum=-0.277;QD=9.91;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPOT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332707    GT:AD:DP:GQ:PL    0/1:29,25:54:99:565,0,847
12    64849868    rs7298226    C    T    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPOT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332707    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
12    64858100    rs79222529    A    AT    320.79    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=43;FS=0.0;HRun=10;HaplotypeScore=111.4739;IndelType=I;MQ=59.82;MQ0=0;MQRankSum=0.782;QD=7.46;ReadPosRankSum=2.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331710    GT:AD:DP:GQ:PL    0/1:28,15:43:99:360,0,496
12    64875787    rs7486100    T    A    657.60    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=38;Dels=0.0;FS=2.944;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.119;QD=17.31;ReadPosRankSum=-0.09;SNPEFF_AMINO_ACID_CHANGE=I326;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_64875622_64875801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331710    GT:AD:DP:GQ:PL    0/1:15,23:38:99:688,0,487
12    65004387    rs3741748    C    T    104.68    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=13;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-0.717;QD=8.05;ReadPosRankSum=-0.717;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_65004293_65004523;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RASSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283172    GT:AD:DP:GQ:PL    0/1:8,5:13:99:135,0,178
12    65004520    rs77813527    A    G    130.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=10;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.336;QD=13.01;ReadPosRankSum=1.668;SNPEFF_AMINO_ACID_CHANGE=Q36;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_65004399_65004523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RASSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336061    GT:AD:DP:GQ:PL    0/1:5,5:10:99:160,0,156
12    65016091    rs2682713    T    C    90.54    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.2;MQ0=0;MQRankSum=-0.849;QD=6.96;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RASSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336061    GT:AD:DP:GQ:PL    0/1:9,4:13:99:121,0,316
12    65134536    rs1690277    C    G    517.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=39.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258145    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:550,39,0
12    65146532    rs1147096    C    T    1520.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.53;MQ0=0;QD=31.04;SNPEFF_AMINO_ACID_CHANGE=P10;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_65146478_65146651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418919    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1554,111,0
12    65146676    rs1147095    T    C    163.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258145    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
12    65232820    rs1144422    T    C    104.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539120    GT:AD:DP:GQ:PL    1/1:0,7:7:12.03:137,12,0
12    65449071    rs1026025    A    G    296.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.355;QD=19.75;ReadPosRankSum=0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286574    GT:AD:DP:GQ:PL    0/1:6,9:15:99:326,0,200
12    65460368    rs3782498    A    G    196.14    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.231;QD=8.92;ReadPosRankSum=0.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535025    GT:AD:DP:GQ:PL    0/1:14,8:22:99:226,0,512
12    65462429    rs34245453    ATGTG    A    426.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=104.8165;IndelType=D;MQ=51.25;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535025    GT:AD:DP:GQ:PL    1/1:2,9:13:33.09:468,33,0
12    65514266    rs7301320    T    C    986.82    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=87;Dels=0.0;FS=11.072;HRun=0;HaplotypeScore=0.8321;MQ=59.52;MQ0=0;MQRankSum=0.27;QD=11.34;ReadPosRankSum=0.243;SNPEFF_AMINO_ACID_CHANGE=A11;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_65514197_65514466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546001    GT:AD:DP:GQ:PL    0/1:49,38:87:99:1017,0,1470
12    65609675    rs67170565    G    GT    272.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=18;FS=0.0;HRun=13;HaplotypeScore=148.9528;IndelType=I;MQ=36.07;MQ0=0;MQRankSum=-2.095;QD=15.12;ReadPosRankSum=0.623;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541171    GT:AD:DP:GQ:PL    0/1:6,12:18:26.86:311,0,27
12    65609707    rs34604927    G    GT    537.31    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.769;DB;DP=34;FS=0.0;HRun=8;HaplotypeScore=181.8379;IndelType=I;MQ=48.81;MQ0=0;MQRankSum=-2.942;QD=15.8;ReadPosRankSum=-0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541171    GT:AD:DP:GQ:PL    0/1:16,18:34:99:576,0,160
12    65633880    rs34562240    GTGAT    G    690    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=3.236;DB;DP=37;FS=1.414;HRun=0;HaplotypeScore=186.197;IndelType=D;MQ=59.04;MQ0=0;MQRankSum=1.211;QD=18.65;ReadPosRankSum=2.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308330    GT:AD:DP:GQ:PL    0/1:22,15:37:99:729,0,1319
12    65639615    rs3217456    ATTTT    A    2264    PASS    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=7.454;DB;DP=88;FS=8.168;HRun=4;HaplotypeScore=411.7784;IndelType=D;MQ=56.69;MQ0=1;MQRankSum=-2.195;QD=25.44;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542032    GT:AD:DP:GQ:PL    0/1:45,44:88:99:2303,0,3602
12    65762703    rs67548266    AC    A    171.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=12;HaplotypeScore=166.9702;IndelType=D;MQ=50.76;MQ0=0;QD=7.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308259    GT:AD:DP:GQ:PL    1/1:7,15:23:28.61:214,29,0
12    65856899    rs61921506    C    T    349.59    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.651;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=1.872;QD=8.13;ReadPosRankSum=-1.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308259    GT:AD:DP:GQ:PL    0/1:27,16:43:99:380,0,947
12    66517828    rs2464304    T    A    670.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266604    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:703,57,0
12    66522628    rs71096072    CA    C    59.62    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=20;FS=0.0;HRun=19;HaplotypeScore=161.8891;IndelType=D;MQ=46.52;MQ0=0;MQRankSum=-0.311;QD=2.71;ReadPosRankSum=-1.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266604    GT:AD:DP:GQ:PL    0/1:13,8:20:26.69:99,0,27
12    66531694    rs1185629    A    G    373.34    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.993;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.807;QD=12.87;ReadPosRankSum=1.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534930    GT:AD:DP:GQ:PL    0/1:14,15:29:99:403,0,500
12    66537283    rs11176057    C    A    420.49    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.51;DB;DP=37;Dels=0.0;FS=4.743;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.046;QD=11.36;ReadPosRankSum=-0.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMBIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286424    GT:AD:DP:GQ:PL    0/1:22,15:37:99:450,0,713
12    66605228    rs1152888    A    G    1521.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=I147V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_66605226_66605377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261233    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1554,114,0
12    66620283    rs1152905    C    A    109.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261233    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:142,12,0
12    66696255    rs3741605    T    C    431.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:465,36,0
12    66696410    rs3741604    C    T    1224.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=R9;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_66696325_66696570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1258,93,0
12    66698438    rs2118139    G    A    274.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:307,24,0
12    66698461    rs2118140    A    G    527.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:560,42,0
12    66698895    rs4430553    T    C    2215.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=L191P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_66698511_66698930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2248,169,0
12    66698954    rs1971302    C    G    1433.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1466,105,0
12    66699922    rs7956960    G    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
12    66704591    rs7973358    A    G    208.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
12    66708138    rs7133479    T    A    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
12    66709353    rs10748038    T    C    78.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
12    66712720    rs11176142    G    T    121.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
12    66717692    rs7969887    T    G    833.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:866,66,0
12    66717716    rs7957877    C    T    1535.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1568,114,0
12    66719052    rs11176144    C    T    171.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536862    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
12    66725160    rs1185244    C    T    586.89    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.815;DB;DP=45;Dels=0.0;FS=1.137;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.241;QD=13.04;ReadPosRankSum=0.034;SNPEFF_AMINO_ACID_CHANGE=P966L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_66724934_66725425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    0/1:26,19:45:99:617,0,676
12    66731864    rs1168329    C    A    606.21    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=3.07;DB;DP=84;Dels=0.0;FS=0.939;HRun=0;HaplotypeScore=0.8321;MQ=59.73;MQ0=0;MQRankSum=0.582;QD=7.22;ReadPosRankSum=-0.05;SNPEFF_AMINO_ACID_CHANGE=T1082;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_66731781_66731979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247815    GT:AD:DP:GQ:PL    0/1:61,23:84:99:636,0,1543
12    66746937    rs1168314    A    G    69.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=13.94;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286445    GT:AD:DP:GQ:PL    0/1:2,3:5:58.27:100,0,58
12    66771108    rs71696436    AT    A    199.65    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=2.376;DB;DP=62;FS=0.0;HRun=17;HaplotypeScore=393.6797;IndelType=D;MQ=57.14;MQ0=0;MQRankSum=-0.056;QD=3.22;ReadPosRankSum=1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286445    GT:AD:DP:GQ:PL    0/1:40,21:62:99:239,0,171
12    66786073    rs7970076    A    G    1261.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542021    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1294,111,0
12    66786091    rs7970387    G    C    2207.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=36.8;SNPEFF_AMINO_ACID_CHANGE=Q661E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_66786088_66786282;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536215    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2241,163,0
12    66786341    rs7970771    G    A    2110.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542021    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2144,166,0
12    66786644    rs2270594    G    A    1484.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542021    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1518,111,0
12    66814466    rs7397861    C    G    1658.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286445    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1692,132,0
12    66814487    rs7397862    C    A    2152.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286445    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2185,163,0
12    66849408    rs1038923    T    C    399.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=24;Dels=0.0;FS=2.917;HRun=1;HaplotypeScore=0.9332;MQ=57.05;MQ0=0;MQRankSum=0.239;QD=16.66;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286445    GT:AD:DP:GQ:PL    0/1:9,15:24:99:430,0,304
12    66859221    rs12820901    T    C    366.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=30;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.502;QD=12.2;ReadPosRankSum=0.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286445    GT:AD:DP:GQ:PL    0/1:15,15:30:99:396,0,479
12    66909389    rs12316942    C    T    1729.06    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.519;DB;DP=160;Dels=0.0;FS=2.879;HRun=0;HaplotypeScore=2.3046;MQ=60.0;MQ0=0;MQRankSum=-0.016;QD=10.81;ReadPosRankSum=-1.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539540    GT:AD:DP:GQ:PL    0/1:92,68:160:99:1759,0,2766
12    66911771    rs11838180    G    T    543.98    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.714;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9945;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=10.88;ReadPosRankSum=-1.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286445    GT:AD:DP:GQ:PL    0/1:28,22:50:99:574,0,782
12    66932832    rs66522623    T    C    661.33    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.161;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.44;MQ0=0;MQRankSum=-0.039;QD=16.13;ReadPosRankSum=0.561;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538373    GT:AD:DP:GQ:PL    0/1:20,21:41:99:691,0,685
12    67696052    rs1143954    A    T    629.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.199;DB;DP=42;Dels=0.0;FS=9.127;HRun=1;HaplotypeScore=0.9332;MQ=58.33;MQ0=0;MQRankSum=-0.14;QD=14.98;ReadPosRankSum=-2.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535146    GT:AD:DP:GQ:PL    0/1:18,24:42:99:659,0,611
12    67701103    rs812325    G    A    225.92    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=25.1;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299218    GT:AD:DP:GQ:PL    0/1:1,8:9:15.93:256,0,16
12    67705741    rs1272090    C    A    30.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.4;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540319    GT:AD:DP:GQ:PL    0/1:5,2:7:60.81:61,0,187
12    67706466    rs1060350    G    A    704.06    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=40;Dels=0.0;FS=1.289;HRun=0;HaplotypeScore=0.5784;MQ=59.42;MQ0=0;MQRankSum=1.669;QD=17.6;ReadPosRankSum=0.848;SNPEFF_AMINO_ACID_CHANGE=L1183;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_67706386_67706754;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299218    GT:AD:DP:GQ:PL    0/1:17,23:40:99:734,0,532
12    68052178    rs3741644    G    T    566.90    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.534;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.552;QD=13.83;ReadPosRankSum=1.082;SNPEFF_AMINO_ACID_CHANGE=G424;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_68050886_68052689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393555    GT:AD:DP:GQ:PL    0/1:20,21:41:99:597,0,672
12    68646521    rs2227491    T    C    684.57    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.476;DB;DP=60;Dels=0.0;FS=3.826;HRun=3;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.188;QD=11.41;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328087    GT:AD:DP:GQ:PL    0/1:35,25:60:99:715,0,1096
12    68647339    rs2227513    T    C    70.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=11.68;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538666    GT:AD:DP:GQ:PL    0/1:3,3:6:92.07:100,0,92
12    68688939    rs7958232    C    T    1237.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.67;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303145    GT:AD:DP:GQ:PL    1/1:0,32:32:96.29:1270,96,0
12    68707576    rs4575357    G    A    1886.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545964    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1920,141,0
12    68708761    rs2306393    C    T    6305.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.75;MQ0=0;QD=33.72;SNPEFF_AMINO_ACID_CHANGE=R209H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_68708728_68709045;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540418    GT:AD:DP:GQ:PL    1/1:0,187:187:99:6305,454,0
12    68709892    rs17224810    C    T    516.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.964;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.139;QD=14.35;ReadPosRankSum=-0.281;SNPEFF_AMINO_ACID_CHANGE=V103I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_68709858_68710033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540418    GT:AD:DP:GQ:PL    0/1:18,18:36:99:547,0,445
12    68717038    rs80219525    T    C    834.58    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.242;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.6;MQ0=0;MQRankSum=-1.306;QD=14.64;ReadPosRankSum=0.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393543    GT:AD:DP:GQ:PL    0/1:26,31:57:99:865,0,897
12    68719216    rs2870812    G    A    6899.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=207;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303145    GT:AD:DP:GQ:PL    1/1:0,207:207:99:6899,512,0
12    68720335    rs17224845    C    T    402.35    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.801;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=16.09;ReadPosRankSum=0.245;SNPEFF_AMINO_ACID_CHANGE=L200;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_68718901_68720801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430606    GT:AD:DP:GQ:PL    0/1:12,13:25:99:432,0,423
12    68720627    rs962976    G    A    1996.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=T103I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_68720437_68720801;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303145    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2030,150,0
12    68721040    rs962977    A    G    182.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541087    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:216,18,0
12    68721462    rs7966516    A    G    174.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541087    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
12    68724951    rs3741808    G    T    6795.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=201;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9658;MQ=60.0;MQ0=0;MQRankSum=-0.07;QD=33.81;ReadPosRankSum=-1.417;SNPEFF_AMINO_ACID_CHANGE=S18;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_68724887_68725001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=MDM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541686    GT:AD:DP:GQ:PL    1/1:1,200:201:99:6795,465,0
12    69048140    .    G    GGGT    523.53    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DP=29;FS=0.0;HRun=0;HaplotypeScore=327.5483;IndelType=I;MQ=37.38;MQ0=0;MQRankSum=-0.171;QD=14.96;ReadPosRankSum=-2.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422358    GT:AD:DP:GQ:PL    0/1:19,10:29:99:563,0,232
12    69080728    rs2259702    T    G    597.24    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.82;QD=14.93;ReadPosRankSum=0.734;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378905    GT:AD:DP:GQ:PL    0/1:18,22:40:99:627,0,485
12    69082669    rs2259592    A    G    66.60    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=6.66;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:7,3:10:96.59:97,0,269
12    69082805    rs2259588    G    A    258.42    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.008;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=7.38;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=R24;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_69082742_69082833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:24,11:35:99:288,0,725
12    69083237    rs2546509    A    G    355.70    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.619;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.372;QD=18.72;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:8,11:19:99:386,0,270
12    69084732    rs2701090    T    C    77.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540453    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
12    69090573    rs35640989    C    CT    106.84    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.454;DB;DP=34;FS=2.629;HRun=13;HaplotypeScore=202.0487;IndelType=I;MQ=58.76;MQ0=0;MQRankSum=1.362;QD=3.14;ReadPosRankSum=-0.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539373    GT:AD:DP:GQ:PL    0/1:21,12:34:99:146,0,155
12    69090754    rs2701088    A    G    211.29    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.206;QD=11.12;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538549    GT:AD:DP:GQ:PL    0/1:11,8:19:99:241,0,372
12    69096398    rs139991082    A    G    734.52    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.708;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=18.36;ReadPosRankSum=-0.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535333    GT:AD:DP:GQ:PL    0/1:14,26:40:99:765,0,448
12    69103668    rs61024131    C    CA    138.24    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=13;FS=0.0;HRun=11;HaplotypeScore=31.1362;IndelType=I;MQ=61.64;MQ0=0;MQRankSum=-0.244;QD=10.63;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537598    GT:AD:DP:GQ:PL    0/1:6,7:13:79.78:177,0,80
12    69109617    rs2701097    T    C    65.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=8.23;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537662    GT:AD:DP:GQ:PL    0/1:4,4:8:95.84:96,0,141
12    69115698    rs17851475    G    A    783.65    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.783;DB;DP=51;Dels=0.0;FS=2.369;HRun=1;HaplotypeScore=0.7887;MQ=59.55;MQ0=0;MQRankSum=0.576;QD=15.37;ReadPosRankSum=-0.274;SNPEFF_AMINO_ACID_CHANGE=Q312;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_69115621_69115766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378905    GT:AD:DP:GQ:PL    0/1:24,27:51:99:814,0,755
12    69119617    rs72496432    G    GGTTTT    324.60    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.378;DB;DP=35;FS=4.746;HRun=0;HaplotypeScore=299.2432;IndelType=I;MQ=53.24;MQ0=0;MQRankSum=-0.342;QD=9.27;ReadPosRankSum=-2.504;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:17,7:35:99:364,0,499
12    69121392    rs10878860    A    C    59.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=9.89;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:3,3:6:89.35:89,0,96
12    69125513    rs7976871    G    T    77.64    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.704;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=0.412;QD=2.88;ReadPosRankSum=0.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:14,13:27:99:108,0,458
12    69125514    rs7976876    G    T    46.30    QDFilter2    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.868;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=-0.801;QD=1.71;ReadPosRankSum=0.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:14,13:27:76.29:76,0,454
12    69125578    rs7976687    C    T    62.44    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=6.24;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:7,3:10:92.43:92,0,225
12    69141678    rs57821268    T    A    743.91    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=2.326;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=17.3;ReadPosRankSum=-0.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229179    GT:AD:DP:GQ:PL    0/1:18,25:43:99:774,0,624
12    69207162    rs1470383    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258148    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    69214352    .    T    C    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.48;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471946    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,110
12    69250548    rs3741598    C    T    344.59    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.262;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.523;QD=14.98;ReadPosRankSum=-0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338356    GT:AD:DP:GQ:PL    0/1:12,11:23:99:375,0,421
12    69252884    rs139432834    C    A    164.39    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=2.155;QD=8.65;ReadPosRankSum=0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338356    GT:AD:DP:GQ:PL    0/1:12,7:19:99:194,0,366
12    69260779    rs33925480    C    T    1009.82    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.527;DB;DP=59;Dels=0.0;FS=1.03;HRun=0;HaplotypeScore=0.9734;MQ=59.22;MQ0=0;MQRankSum=-1.092;QD=17.12;ReadPosRankSum=0.008;SNPEFF_AMINO_ACID_CHANGE=T279;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_69260676_69260828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338356    GT:AD:DP:GQ:PL    0/1:26,33:59:99:1040,0,761
12    69260859    rs112755271    G    C    306.76    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=27;Dels=0.0;FS=15.079;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.024;QD=11.36;ReadPosRankSum=0.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547134    GT:AD:DP:GQ:PL    0/1:14,13:27:99:337,0,478
12    69265578    rs2228654    A    G    1215.54    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.552;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0386;MQ=59.31;MQ0=0;MQRankSum=-0.886;QD=18.14;ReadPosRankSum=-0.558;SNPEFF_AMINO_ACID_CHANGE=Y139;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_69265564_69265736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338356    GT:AD:DP:GQ:PL    0/1:26,40:67:99:1246,0,867
12    69279736    rs2701085    A    G    619.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338356    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:652,48,0
12    69594170    rs7486679    G    T    90.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=66.83;MQ0=0;QD=30.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC127894.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408495    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    69652336    rs35783703    G    GT    409.99    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.233;DB;DP=40;FS=0.0;HRun=9;HaplotypeScore=95.4799;IndelType=I;MQ=59.7;MQ0=0;MQRankSum=-0.646;QD=10.25;ReadPosRankSum=0.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547486    GT:AD:DP:GQ:PL    0/1:23,17:40:99:449,0,430
12    69744104    rs686407    C    T    409.20    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=21;Dels=0.0;FS=2.969;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.036;QD=19.49;ReadPosRankSum=-1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261267    GT:AD:DP:GQ:PL    0/1:8,13:21:99:439,0,249
12    69759551    rs34422842    AT    A    776.61    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=7.003;DB;DP=79;FS=0.0;HRun=8;HaplotypeScore=187.6166;IndelType=D;MQ=60.82;MQ0=0;MQRankSum=1.109;QD=9.83;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552949    GT:AD:DP:GQ:PL    0/1:42,37:79:99:816,0,1144
12    69764399    rs111814058    C    T    168.12    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.377;QD=12.93;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YEATS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247843    GT:AD:DP:GQ:PL    0/1:6,7:13:99:198,0,213
12    69924757    rs59475670    CT    C    32.36    QDFilter2    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=35;FS=0.0;HRun=17;HaplotypeScore=256.26;IndelType=D;MQ=52.42;MQ0=0;MQRankSum=1.755;QD=0.92;ReadPosRankSum=1.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299293    GT:AD:DP:GQ:PL    0/1:22,7:35:71.39:71,0,142
12    70037520    rs61747221    G    A    530.45    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.234;DB;DP=51;Dels=0.0;FS=1.116;HRun=0;HaplotypeScore=0.8941;MQ=59.55;MQ0=0;MQRankSum=-0.928;QD=10.4;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=P383L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_70037334_70037567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BEST3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331471    GT:AD:DP:GQ:PL    0/1:30,21:51:99:560,0,768
12    70066856    rs2277389    C    T    39.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.89;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BEST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548658    GT:AD:DP:GQ:PL    0/1:3,2:5:69.43:69,0,83
12    70070942    rs710718    A    G    1017.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BEST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548658    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1050,81,0
12    70072479    rs3741755    C    G    409.58    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.24;DB;DP=31;Dels=0.0;FS=1.773;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.157;QD=13.21;ReadPosRankSum=-1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BEST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266661    GT:AD:DP:GQ:PL    0/1:15,16:31:99:440,0,513
12    70078172    rs710714    C    T    151.80    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=18.98;ReadPosRankSum=1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BEST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393365    GT:AD:DP:GQ:PL    0/1:3,5:8:95.26:182,0,95
12    70091356    rs710710    G    T    391.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.807;DB;DP=30;Dels=0.0;FS=4.821;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.069;QD=13.06;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BEST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266661    GT:AD:DP:GQ:PL    0/1:15,15:30:99:422,0,479
12    70091432    rs775429    T    C    1789.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_AMINO_ACID_CHANGE=V49;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_70091427_70091593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BEST3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330891    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1822,135,0
12    70147464    rs10735956    T    C    1430.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247833    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1464,114,0
12    70188346    rs35394896    T    A    508.94    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=45;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7326;MQ=60.0;MQ0=0;MQRankSum=-0.258;QD=11.31;ReadPosRankSum=1.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247833    GT:AD:DP:GQ:PL    0/1:24,21:45:99:539,0,771
12    70195293    rs10879014    T    G    73.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-2.383;QD=7.36;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378815    GT:AD:DP:GQ:PL    0/1:6,4:10:99:104,0,220
12    70195341    rs111879916    A    ATATTTTT    1325.15    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.622;DB;DP=26;FS=3.388;HRun=0;HaplotypeScore=154.2277;IndelType=I;MQ=48.47;MQ0=0;MQRankSum=-3.534;QD=50.97;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378815    GT:AD:DP:GQ:PL    0/1:17,5:26:99:1364,0,669
12    70672149    rs11611635    T    A    334.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229195    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:368,27,0
12    70713299    rs1404124    A    G    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.43;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547867    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,141
12    70724007    rs2272180    A    T    519.07    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.438;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.954;QD=23.59;ReadPosRankSum=1.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547321    GT:AD:DP:GQ:PL    0/1:6,16:22:99:549,0,181
12    70724053    rs11615947    G    A    356.02    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.137;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.297;QD=9.62;ReadPosRankSum=-1.557;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547321    GT:AD:DP:GQ:PL    0/1:23,14:37:99:386,0,654
12    70735733    rs7312892    G    A    339.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548599    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:372,27,0
12    70740194    rs3817487    G    A    627.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548686    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:660,48,0
12    70747693    rs35192504    T    TA    144.28    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DB;DP=80;FS=10.414;HRun=25;HaplotypeScore=512.4321;IndelType=I;MQ=45.78;MQ0=0;MQRankSum=-1.738;QD=1.8;ReadPosRankSum=-1.738;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_70747609_70748773;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000229195    GT:AD:DP:GQ:PL    1/1:63,9:80:27.57:186,28,0
12    70794186    rs710651    G    A    898.83    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.156;DB;DP=51;Dels=0.0;FS=1.484;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-2.569;QD=17.62;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNMB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258111    GT:AD:DP:GQ:PL    0/1:24,27:51:99:929,0,756
12    70913818    rs630608    A    G    179.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=19.96;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:3,6:9:96.55:210,0,97
12    70915347    rs369876    A    G    179.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:212,15,0
12    70918141    rs1025407    T    G    621.04    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.998;DB;DP=47;Dels=0.0;FS=3.054;HRun=1;HaplotypeScore=0.9578;MQ=58.51;MQ0=0;MQRankSum=0.586;QD=13.21;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:19,28:47:99:651,0,671
12    70918185    rs1025408    A    G    1136.05    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=2.441;DB;DP=85;Dels=0.0;FS=6.362;HRun=0;HaplotypeScore=1.445;MQ=58.96;MQ0=0;MQRankSum=-0.207;QD=13.37;ReadPosRankSum=-1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1166,0,1328
12    70928616    rs3752703    G    A    1578.51    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=144;Dels=0.0;FS=2.15;HRun=0;HaplotypeScore=3.838;MQ=59.68;MQ0=0;MQRankSum=-0.47;QD=10.96;ReadPosRankSum=-1.191;SNPEFF_AMINO_ACID_CHANGE=C1759;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_70928613_70928735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451516    GT:AD:DP:GQ:PL    0/1:86,58:144:99:1609,0,2492
12    70928724    rs582954    A    G    3708.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8455;MQ=59.33;MQ0=0;QD=35.66;SNPEFF_AMINO_ACID_CHANGE=D1723;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_70928613_70928735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451516    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3708,277,0
12    70930061    rs2278346    T    G    102.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=8.53;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549400    GT:AD:DP:GQ:PL    0/1:7,5:12:99:132,0,248
12    70931787    rs3214594    A    AT    206.56    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.337;DB;DP=23;FS=0.0;HRun=8;HaplotypeScore=55.4169;IndelType=I;MQ=60.93;MQ0=0;MQRankSum=0.267;QD=8.98;ReadPosRankSum=-0.601;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549400    GT:AD:DP:GQ:PL    0/1:14,9:23:99:246,0,291
12    70932245    rs4761150    G    A    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549400    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    70933687    rs919595    A    G    1919.41    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.514;DB;DP=119;Dels=0.0;FS=3.387;HRun=0;HaplotypeScore=0.9983;MQ=59.61;MQ0=0;MQRankSum=1.079;QD=16.13;ReadPosRankSum=-0.848;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:59,60:119:99:1949,0,1734
12    70933908    rs75022865    C    A    132.55    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.674;QD=8.84;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:10,5:15:99:163,0,351
12    70933919    rs599619    C    T    402.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:436,33,0
12    70934961    rs2278345    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    70938176    rs4761221    G    A    210.98    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=3.471;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.598;QD=5.7;ReadPosRankSum=-0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:27,10:37:99:241,0,934
12    70938279    rs10531402    AGAG    A    2949.02    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=7.927;DB;DP=132;FS=0.0;HRun=0;HaplotypeScore=543.6903;IndelType=D;MQ=58.65;MQ0=0;MQRankSum=-0.384;QD=22.34;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:69,63:132:99:2988,0,4361
12    70949620    rs2278341    G    A    610.19    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=3.002;DB;DP=48;Dels=0.0;FS=1.561;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.099;QD=12.71;ReadPosRankSum=-0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548122    GT:AD:DP:GQ:PL    0/1:25,22:48:99:640,0,750
12    70949973    rs34153346    A    ATT    165.61    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.248;DB;DP=32;FS=0.0;HRun=11;HaplotypeScore=127.9678;IndelType=I;MQ=58.55;MQ0=0;MQRankSum=-0.504;QD=5.18;ReadPosRankSum=-0.611;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548122    GT:AD:DP:GQ:PL    0/1:24,5:32:99:205,0,453
12    70956443    rs2567132    A    G    454.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:487,36,0
12    70983895    rs2165627    A    C    3134.07    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.913;DB;DP=210;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.3908;MQ=59.45;MQ0=0;MQRankSum=-1.206;QD=14.92;ReadPosRankSum=1.151;SNPEFF_AMINO_ACID_CHANGE=D415E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_70983744_70984013;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:100,110:210:99:3164,0,3090
12    70984019    rs1465934    C    T    1869.58    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=5.152;DB;DP=171;Dels=0.0;FS=0.594;HRun=0;HaplotypeScore=9.5996;MQ=58.91;MQ0=0;MQRankSum=-0.707;QD=10.93;ReadPosRankSum=0.856;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552253    GT:AD:DP:GQ:PL    0/1:96,73:171:99:1900,0,2560
12    70985925    rs17814380    A    C    671.38    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.786;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.604;QD=18.65;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:15,21:36:99:701,0,506
12    70988149    rs17814392    T    C    535.12    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.285;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.158;QD=14.86;ReadPosRankSum=0.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:19,17:36:99:565,0,675
12    70988287    rs34615667    A    G    1771.97    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.218;DB;DP=124;Dels=0.0;FS=3.348;HRun=1;HaplotypeScore=3.623;MQ=59.81;MQ0=0;MQRankSum=1.15;QD=14.29;ReadPosRankSum=0.846;SNPEFF_AMINO_ACID_CHANGE=A274;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_70988247_70988504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:56,67:124:99:1802,0,1773
12    70988719    rs11178315    T    C    54.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=9.16;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    0/1:3,3:6:84.94:85,0,105
12    70990134    rs60135927    C    CA    928.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.151;DB;DP=57;FS=3.284;HRun=12;HaplotypeScore=403.9078;IndelType=I;MQ=51.54;MQ0=3;MQRankSum=-1.301;QD=15.47;ReadPosRankSum=-1.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261266    GT:AD:DP:GQ:PL    1/1:29,31:57:75.14:970,75,0
12    71016506    rs17226479    A    G    592.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334414    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:625,48,0
12    71078135    rs7958846    G    C    380.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550661    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:413,33,0
12    71139664    rs3803036    T    C    1358.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=K108R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_71139598_71139866;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378778    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1391,105,0
12    71523043    rs1705263    C    A    147.72    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=8.21;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247829    GT:AD:DP:GQ:PL    0/1:11,7:18:99:178,0,391
12    71526677    rs1397566    A    G    65.19    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=5.93;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247829    GT:AD:DP:GQ:PL    0/1:8,3:11:95.18:95,0,247
12    71531889    rs1798093    T    C    2575.20    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=3.779;DB;DP=221;Dels=0.0;FS=1.173;HRun=1;HaplotypeScore=1.7323;MQ=59.79;MQ0=0;MQRankSum=0.342;QD=11.65;ReadPosRankSum=-0.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552786    GT:AD:DP:GQ:PL    0/1:123,98:221:99:2605,0,4104
12    71898193    rs7306975    T    C    336.36    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=21.02;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    0/1:6,10:16:99:366,0,203
12    71898220    rs7307080    T    C    644.82    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=4.389;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=0.346;QD=19.54;ReadPosRankSum=0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    0/1:14,19:33:99:675,0,403
12    71898287    rs7136209    G    A    1158.11    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.156;DB;DP=92;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6188;MQ=60.0;MQ0=0;MQRankSum=-1.609;QD=12.59;ReadPosRankSum=-0.125;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1188,0,1616
12    71898358    rs7307225    T    C    2668.03    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.034;DB;DP=211;Dels=0.0;FS=4.579;HRun=0;HaplotypeScore=2.3391;MQ=59.89;MQ0=0;MQRankSum=0.617;QD=12.59;ReadPosRankSum=0.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    0/1:110,100:211:99:2698,0,3380
12    71918078    rs7980959    T    G    374.31    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.154;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.484;QD=17.01;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    0/1:10,12:22:99:404,0,343
12    71947173    rs1148985    G    A    801.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    1/1:0,22:23:63.21:835,63,0
12    71960001    rs1795460    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    71960012    rs1795461    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
12    71960208    rs1797372    G    A    1852.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_AMINO_ACID_CHANGE=Q222;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_71960184_71960255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536515    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1886,138,0
12    71960329    rs1797373    G    A    2511.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2545,187,0
12    71960533    rs1797374    G    A    1587.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9279;MQ=60.0;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1621,123,0
12    71960584    rs1726469    T    C    956.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266674    GT:AD:DP:GQ:PL    1/1:0,33:33:81.21:990,81,0
12    72004884    rs34631263    G    GA    981.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;DB;DP=94;FS=0.0;HRun=15;HaplotypeScore=522.1844;IndelType=I;MQ=55.1;MQ0=0;MQRankSum=-1.918;QD=10.44;ReadPosRankSum=-1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546475    GT:AD:DP:GQ:PL    1/1:55,29:94:43.35:1023,43,0
12    72013832    rs1298463    A    G    1421.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=A1641;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_72013706_72013904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378743    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1455,111,0
12    72017637    rs1148987    T    C    160.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378743    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:193,15,0
12    72019989    rs55719302    T    TAC    978.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.342;DB;DP=44;FS=6.702;HRun=0;HaplotypeScore=152.848;IndelType=I;MQ=61.43;MQ0=0;MQRankSum=0.787;QD=22.24;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378743    GT:AD:DP:GQ:PL    1/1:19,23:44:12.59:1020,13,0
12    72020377    rs1148991    C    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378743    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
12    72021850    rs1148993    T    C    115.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546606    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
12    72022556    rs1148996    C    G    284.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546606    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
12    72023235    rs1280594    G    C    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546606    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
12    72026872    rs1011331    T    C    588.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378743    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:622,51,0
12    72028607    rs63243162    TA    T    823.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=13;HaplotypeScore=195.5156;IndelType=D;MQ=59.12;MQ0=0;QD=15.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378743    GT:AD:DP:GQ:PL    1/1:12,39:54:99:865,120,0
12    72030252    rs1149006    T    C    1100.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378743    GT:AD:DP:GQ:PL    1/1:0,33:33:81.27:1134,81,0
12    72036499    rs1149010    G    C    409.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFC3H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550712    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:443,33,0
12    72289882    .    G    T    133.06    FSFilter60    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.782;DP=51;Dels=0.0;FS=100.804;HRun=2;HaplotypeScore=1.9648;MQ=53.82;MQ0=0;MQRankSum=-1.116;QD=2.61;ReadPosRankSum=-1.823;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468049    GT:AD:DP:GQ:PL    0/1:35,16:51:99:163,0,953
12    72355179    rs1386493    A    G    790.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266669    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:824,63,0
12    72355504    rs76143560    A    G    2217.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333850    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2251,172,0
12    72366118    rs7978692    T    C    323.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333850    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:356,27,0
12    72366186    rs7963720    C    T    2016.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333850    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2050,156,0
12    72372601    rs4760816    C    T    1002.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.14;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333850    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1035,78,0
12    72372862    rs7305115    A    G    4775.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.782;MQ=59.69;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=P312;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_72372732_72372867;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333850    GT:AD:DP:GQ:PL    1/1:0,149:149:99:4775,358,0
12    72388374    rs1007023    G    T    1071.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333850    GT:AD:DP:GQ:PL    1/1:0,30:30:84.26:1104,84,0
12    72416235    rs4290270    A    T    1974.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=A375;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_72416179_72416274;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333850    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2008,144,0
12    72425010    rs17110741    T    A    1791.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333850    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1824,138,0
12    72935947    rs723867    G    C    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,107
12    72955901    rs2272507    C    T    184.06    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=16.73;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    0/1:5,6:11:99:214,0,163
12    72956100    rs2272506    T    G    41.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.46;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:72,0,69
12    72956570    rs1968965    T    C    385.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.396;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.202;QD=16.05;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    0/1:12,12:24:99:415,0,402
12    72956613    rs2272505    G    A    737.55    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.501;DB;DP=47;Dels=0.0;FS=3.811;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.223;QD=15.69;ReadPosRankSum=-1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    0/1:23,24:47:99:768,0,700
12    72957065    rs7311155    G    T    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
12    72962288    rs1032331    T    A    404.79    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=24;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.552;QD=16.87;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    0/1:10,14:24:99:435,0,324
12    72962622    rs10128853    A    G    92.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
12    72969198    rs2272504    A    C    940.91    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=1.075;DB;DP=82;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=1.929;MQ=59.44;MQ0=0;MQRankSum=0.939;QD=11.47;ReadPosRankSum=0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    0/1:47,35:82:99:971,0,1322
12    73012573    rs11613768    T    G    296.27    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.724;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.575;QD=10.97;ReadPosRankSum=-1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRHDE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261180    GT:AD:DP:GQ:PL    0/1:14,12:27:99:326,0,505
12    74293561    rs7484550    C    G    1572.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=56.52;MQ0=0;QD=34.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-314D7.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549058    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1605,120,0
12    74293699    rs142009105    TACACACACAC    T    573.86    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=145.0564;IndelType=D;MQ=45.98;MQ0=0;MQRankSum=-0.747;QD=44.14;ReadPosRankSum=0.747;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC136188.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401125    GT:AD:DP:GQ:PL    0/1:6,7:13:99:613,0,107
12    75687185    rs7967562    G    A    609.90    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.997;DB;DP=39;Dels=0.0;FS=1.795;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.351;QD=15.64;ReadPosRankSum=-0.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378703    GT:AD:DP:GQ:PL    0/1:20,19:39:99:640,0,643
12    75692607    rs7485576    G    A    703.71    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.569;DB;DP=40;Dels=0.0;FS=1.222;HRun=0;HaplotypeScore=0.9332;MQ=58.84;MQ0=0;MQRankSum=0.014;QD=17.59;ReadPosRankSum=-0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552497    GT:AD:DP:GQ:PL    0/1:18,22:40:99:734,0,498
12    75706720    rs60971359    T    C    298.26    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.817;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.211;QD=14.91;ReadPosRankSum=0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393284    GT:AD:DP:GQ:PL    0/1:7,12:19:99:328,0,233
12    75710004    rs10879900    C    T    697.41    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.991;DB;DP=47;Dels=0.0;FS=4.41;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=1.166;QD=14.84;ReadPosRankSum=-0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393284    GT:AD:DP:GQ:PL    0/1:21,26:47:99:727,0,721
12    75710362    rs12367108    A    G    66.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.54;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486196    GT:AD:DP:GQ:PL    0/1:4,3:7:96.75:97,0,146
12    75715330    rs10879901    C    A    1352.21    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.827;DB;DP=111;Dels=0.0;FS=2.573;HRun=3;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-1.742;QD=12.18;ReadPosRankSum=1.791;SNPEFF_AMINO_ACID_CHANGE=L125F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_75715180_75715356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409445    GT:AD:DP:GQ:PL    0/1:65,46:111:99:1382,0,1877
12    75737336    rs7312406    C    A    161.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436898    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
12    75784773    rs7978856    C    T    30.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CAPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328705    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:61,0,34
12    75785100    rs11180483    C    T    728.39    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=67;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=3.9762;MQ=58.96;MQ0=0;MQRankSum=0.457;QD=10.87;ReadPosRankSum=-0.364;SNPEFF_AMINO_ACID_CHANGE=V68;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_75784889_75785130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320460    GT:AD:DP:GQ:PL    0/1:39,28:67:99:758,0,994
12    75796721    rs7135440    G    T    295.78    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=11.38;ReadPosRankSum=-0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320460    GT:AD:DP:GQ:PL    0/1:16,10:26:99:326,0,590
12    75816612    rs1543946    C    G    342.47    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.419;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.518;QD=12.68;ReadPosRankSum=1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320460    GT:AD:DP:GQ:PL    0/1:16,11:27:99:372,0,554
12    75816814    .    G    GACA    1853.39    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.335;DP=65;FS=1.017;HRun=0;HaplotypeScore=192.5652;IndelType=I;MQ=59.29;MQ0=0;MQRankSum=1.154;QD=28.51;ReadPosRankSum=1.661;SNPEFF_AMINO_ACID_CHANGE=D239DN;SNPEFF_CODON_CHANGE=gac/gACAac;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_12_75816684_75817820;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320460    GT:AD:DP:GQ:PL    0/1:34,31:65:99:1892,0,1328
12    75875576    rs1909979    C    T    1700.05    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.648;DB;DP=130;Dels=0.0;FS=8.193;HRun=3;HaplotypeScore=2.8713;MQ=59.47;MQ0=0;MQRankSum=1.874;QD=13.08;ReadPosRankSum=1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266659    GT:AD:DP:GQ:PL    0/1:69,61:130:99:1730,0,2218
12    75875995    rs2292009    G    T    91.25    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=10.14;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266659    GT:AD:DP:GQ:PL    0/1:5,4:9:99:121,0,186
12    75893865    rs1697754    G    A    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456650    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,112
12    75900396    rs35071517    CA    C    137    QDFilter2    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.95;DB;DP=75;FS=3.043;HRun=17;HaplotypeScore=638.2553;IndelType=D;MQ=49.93;MQ0=0;MQRankSum=1.59;QD=1.83;ReadPosRankSum=2.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266659    GT:AD:DP:GQ:PL    0/1:40,16:75:99:176,0,245
12    75900702    rs2704766    G    A    465.92    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=27;Dels=0.0;FS=2.551;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.999;QD=17.26;ReadPosRankSum=-1.357;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266659    GT:AD:DP:GQ:PL    0/1:11,16:27:99:496,0,342
12    76358725    rs184238551    C    A    1717.13    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.127;DB;DP=122;Dels=0.0;FS=3.32;HRun=1;HaplotypeScore=1.7338;MQ=59.24;MQ0=0;MQRankSum=0.682;QD=14.07;ReadPosRankSum=-1.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-114H23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552856    GT:AD:DP:GQ:PL    0/1:62,60:122:99:1747,0,1865
12    76424153    rs1433369    T    C    194.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266671    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:227,18,0
12    76424937    rs71752486    TTGC    T    345.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=79.8866;IndelType=D;MQ=62.97;MQ0=0;QD=24.71;SNPEFF_AMINO_ACID_CHANGE=QQ194Q;SNPEFF_CODON_CHANGE=cagcaa/caa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_12_76424290_76427712;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266671    GT:AD:DP:GQ:PL    1/1:5,9:14:27.09:388,27,0
12    76442907    rs11180815    T    C    176.61    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=20;Dels=0.0;FS=4.559;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=8.83;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547969    GT:AD:DP:GQ:PL    0/1:13,7:20:99:207,0,480
12    76444510    rs4831914    G    A    252.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547704    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
12    76447792    rs35076461    AT    A    809.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=9;HaplotypeScore=83.0157;IndelType=D;MQ=60.32;MQ0=0;QD=23.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547704    GT:AD:DP:GQ:PL    1/1:3,31:34:93.05:851,93,0
12    76448584    rs7976730    T    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547704    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
12    76449900    rs1059143    T    C    1519.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=29.79;SNPEFF_AMINO_ACID_CHANGE=K115;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_76449813_76449938;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542344    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1552,129,0
12    76453861    rs7956821    G    A    548.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261182    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:582,42,0
12    76453873    rs10880030    C    T    577.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261182    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:611,45,0
12    76453966    rs4663    G    A    1593.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=H100;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_76453918_76454059;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261182    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1627,120,0
12    76460933    rs7972051    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549479    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    76461137    rs10785227    T    C    2109.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.86;MQ0=0;QD=34.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549479    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2142,162,0
12    76461145    rs7972289    C    T    2286.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.91;MQ0=0;QD=35.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549479    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2320,175,0
12    76461257    rs36065816    T    TA    424.22    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.497;DB;DP=44;FS=0.0;HRun=10;HaplotypeScore=156.9837;IndelType=I;MQ=59.41;MQ0=0;MQRankSum=0.0;QD=9.64;ReadPosRankSum=-1.353;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549479    GT:AD:DP:GQ:PL    0/1:25,19:44:99:463,0,268
12    76462612    rs10880034    T    C    830.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551500    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:863,63,0
12    76762923    rs10656017    A    AAAT    430.94    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.329;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=59.1047;IndelType=I;MQ=56.75;MQ0=0;MQRankSum=-0.741;QD=25.35;ReadPosRankSum=-0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546946    GT:AD:DP:GQ:PL    0/1:11,6:17:99:470,0,456
12    76763092    rs11459293    G    GA    102.11    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.626;DB;DP=25;FS=0.0;HRun=13;HaplotypeScore=58.7499;IndelType=I;MQ=60.86;MQ0=0;MQRankSum=1.54;QD=4.08;ReadPosRankSum=0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546946    GT:AD:DP:GQ:PL    0/1:18,7:25:99:141,0,172
12    76763731    rs4319553    T    C    151.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552586    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
12    76767065    rs71311107    A    AT    171.32    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.15;DB;DP=26;FS=0.0;HRun=10;HaplotypeScore=67.2025;IndelType=I;MQ=59.95;MQ0=0;MQRankSum=1.078;QD=6.59;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:17,9:26:99:210,0,322
12    76769209    rs7299563    G    A    487.65    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.776;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.13;QD=21.2;ReadPosRankSum=-0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:8,15:23:99:518,0,278
12    76780051    rs72247585    T    TA    112.02    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=29;FS=0.0;HRun=14;HaplotypeScore=115.5348;IndelType=I;MQ=56.74;MQ0=0;MQRankSum=-0.433;QD=3.86;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550865    GT:AD:DP:GQ:PL    0/1:16,9:29:85.22:151,0,85
12    76780471    rs73137003    A    T    753.98    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.132;DB;DP=65;Dels=0.0;FS=3.159;HRun=4;HaplotypeScore=0.9967;MQ=59.36;MQ0=0;MQRankSum=0.424;QD=11.6;ReadPosRankSum=-0.357;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550865    GT:AD:DP:GQ:PL    0/1:35,30:65:99:784,0,1103
12    76786349    rs4761423    G    A    505.80    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=0.879;DB;DP=54;Dels=0.0;FS=2.606;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.131;QD=9.37;ReadPosRankSum=0.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:33,20:54:99:536,0,1008
12    76804168    rs35236201    G    A    237.59    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=26.4;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:1,8:9:17.68:268,0,18
12    76804493    rs34492199    T    C    541.22    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.556;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.294;QD=14.24;ReadPosRankSum=1.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:21,17:38:99:571,0,716
12    76805983    rs12814818    T    C    436.98    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.937;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=19.0;ReadPosRankSum=0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:9,14:23:99:467,0,274
12    76844948    rs11831908    C    T    288.16    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.774;QD=22.17;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:4,9:13:99:318,0,103
12    76852809    rs34838249    C    T    355.92    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=14.83;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:11,13:24:99:386,0,314
12    76853874    rs10778674    A    C    35.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.97;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261183    GT:AD:DP:GQ:PL    0/1:4,2:6:65.82:66,0,139
12    77054292    rs111457638    AG    A    606.86    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=4.736;DB;DP=43;FS=1.186;HRun=2;HaplotypeScore=104.591;IndelType=D;MQ=43.41;MQ0=11;MQRankSum=0.937;QD=10.65;ReadPosRankSum=1.23;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613M5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485945    GT:AD:DP:GQ:PL    0/1:28,29:43:99:646,0,896
12    77054675    rs34680604    T    TA    169.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.264;DB;DP=21;FS=2.932;HRun=11;HaplotypeScore=152.1672;IndelType=I;MQ=39.32;MQ0=0;MQRankSum=1.264;QD=5.46;ReadPosRankSum=-0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-613M5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485945    GT:AD:DP:GQ:PL    1/1:20,10:21:12.51:211,13,0
12    77199250    rs140164197    AACTTG    A    1208.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=141.5909;IndelType=D;MQ=50.43;MQ0=0;QD=52.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334822    GT:AD:DP:GQ:PL    1/1:3,19:23:60.21:1250,60,0
12    77202798    rs10778920    A    G    1575.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.986;MQ=59.52;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334822    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1609,123,0
12    77214681    rs1477748    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334822    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:82,6,0
12    77214788    rs2306142    G    A    2002.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=59.61;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334822    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2036,150,0
12    77216330    rs11340478    ATT    A    38.51    QDFilter2    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=30;FS=0.0;HRun=21;HaplotypeScore=277.8766;IndelType=D;MQ=51.3;MQ0=0;MQRankSum=2.383;QD=1.28;ReadPosRankSum=2.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359019    GT:AD:DP:GQ:PL    0/1:17,7:30:19.71:78,0,20
12    77216460    rs4761448    G    A    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359019    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    77220514    rs4761342    T    A    579.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334822    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:613,48,0
12    77220957    rs4761450    G    A    657.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546778    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:690,51,0
12    77236968    rs1979743    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549010    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
12    77239420    rs66538724    AAAAT    A    3368.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=0;HaplotypeScore=330.4024;IndelType=D;MQ=51.35;MQ0=0;QD=53.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549010    GT:AD:DP:GQ:PL    1/1:1,62:63:99:3368,187,0
12    77253551    rs2071326    G    T    167.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311083    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
12    77254207    rs35557984    GA    G    1106.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=9;HaplotypeScore=121.5079;IndelType=D;MQ=61.17;MQ0=0;QD=24.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311083    GT:AD:DP:GQ:PL    1/1:4,42:46:99:1149,126,0
12    77259767    rs762785    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551725    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    77424135    rs10862960    C    T    2564.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552907    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2598,193,0
12    77426776    rs753266    G    A    1497.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552907    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1530,117,0
12    77427164    rs73758    C    T    170.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552907    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
12    77427951    rs1565728    C    T    190.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322886    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:224,18,0
12    77438436    rs2242384    T    C    923.98    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.536;QD=10.27;ReadPosRankSum=0.502;SNPEFF_AMINO_ACID_CHANGE=P323;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_77438417_77438575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322886    GT:AD:DP:GQ:PL    0/1:56,34:90:99:954,0,1600
12    77438607    rs2242383    T    C    933.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551558    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:967,72,0
12    77449790    rs310791    A    G    2785.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8924;MQ=59.44;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=F72L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_77449635_77449910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322886    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2819,211,0
12    78225186    rs17195772    C    A    3098.76    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.761;DB;DP=248;DS;Dels=0.0;FS=10.689;HRun=1;HaplotypeScore=1.787;MQ=59.74;MQ0=0;MQRankSum=-0.233;QD=12.49;ReadPosRankSum=0.528;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_12_78225069_78225484;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    0/1:134,114:248:99:3129,0,4222
12    78225374    rs10735309    A    G    3393.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=37.29;SNPEFF_AMINO_ACID_CHANGE=T45A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_78225069_78225484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3394,247,0
12    78391958    rs11107763    A    C    233.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:267,21,0
12    78510415    rs11835006    T    A    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,103
12    78511755    rs300442    T    C    3386.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3893;MQ=59.21;MQ0=0;QD=38.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3386,250,0
12    78530979    rs1852464    G    A    2104.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_AMINO_ACID_CHANGE=Q109;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_78530957_78531145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378640    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2138,157,0
12    78531156    rs2290103    A    G    950.81    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.261;DB;DP=81;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.849;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=11.74;ReadPosRankSum=-0.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    0/1:37,44:81:99:981,0,1187
12    78531207    rs300462    T    C    1431.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1464,123,0
12    78534233    rs1726427    A    G    335.74    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=18.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    0/1:7,11:18:99:366,0,238
12    78540174    rs34144410    TA    T    947.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=10;HaplotypeScore=97.2797;IndelType=D;MQ=59.6;MQ0=0;QD=24.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:1,38:39:99:990,114,0
12    78542594    rs444864    T    G    292.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.139;DB;DP=25;Dels=0.0;FS=3.96;HRun=0;HaplotypeScore=9.9676;MQ=60.0;MQ0=0;MQRankSum=-1.636;QD=11.71;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    0/1:15,10:25:99:323,0,358
12    78542602    rs35689968    A    AT    245.33    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=4.19;DB;DP=27;FS=3.992;HRun=7;HaplotypeScore=101.5432;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.713;QD=9.09;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    0/1:17,10:27:99:284,0,385
12    78542699    rs366527    T    C    332.20    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.055;DB;DP=31;Dels=0.0;FS=1.419;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.544;QD=10.72;ReadPosRankSum=0.377;SNPEFF_AMINO_ACID_CHANGE=N1418;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_78542622_78542699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266692    GT:AD:DP:GQ:PL    0/1:17,14:31:99:362,0,444
12    78562687    rs1726431    A    G    1531.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1564,114,0
12    78569059    rs2442134    G    A    1256.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,37:37:93.31:1290,93,0
12    78570914    rs1020462    G    C    2261.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6385;MQ=59.61;MQ0=0;QD=38.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2294,166,0
12    78571186    rs1020461    T    C    834.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:868,66,0
12    78571490    rs958836    T    C    1093.58    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.054;DB;DP=68;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.5784;MQ=59.66;MQ0=0;MQRankSum=-0.632;QD=16.08;ReadPosRankSum=0.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1124,0,901
12    78573164    rs300525    C    T    347.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:381,30,0
12    78579636    rs300515    T    G    130.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
12    78582362    rs300513    T    C    1397.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=35.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548948    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1430,108,0
12    78582566    rs400289    A    G    1579.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6809;MQ=59.49;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548948    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1613,123,0
12    78590946    rs300498    A    C    487.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:521,39,0
12    78591249    rs981213    C    A    405.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:438,33,0
12    78592646    rs300496    C    G    132.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:165,12,0
12    78592992    rs11272983    ATGGGAACATTATTAC    A    642.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=86.2008;IndelType=D;MQ=29.0;MQ0=0;QD=107.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:684,15,0
12    78593070    rs149769509    AAATTT    A    581.05    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=130.6015;IndelType=D;MQ=52.65;MQ0=0;MQRankSum=-0.619;QD=29.05;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    0/1:9,11:20:99:620,0,658
12    78593457    rs4761326    C    T    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550788    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    78594405    rs3214044    T    A    588.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.059;DB;DP=38;Dels=0.0;FS=0.0;HRun=11;HaplotypeScore=5.7824;MQ=58.16;MQ0=0;MQRankSum=-0.096;QD=15.49;ReadPosRankSum=-0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547884    GT:AD:DP:GQ:PL    1/1:3,35:38:60.11:622,60,0
12    78598891    rs9971904    G    A    1248.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=P167;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_78598715_78598918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541270    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1282,96,0
12    78603962    rs300449    C    T    131.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228327    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:164,12,0
12    79611374    rs2037743    C    T    1275.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=N25;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_79611283_79611465;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261205    GT:AD:DP:GQ:PL    1/1:0,37:37:96.32:1308,96,0
12    79611536    rs2400390    T    C    363    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549454    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:396,30,0
12    79747487    rs1732664    T    C    1106.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261205    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1140,87,0
12    80014907    rs78187003    A    T    1389.56    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.184;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.181;QD=16.16;ReadPosRankSum=-1.109;SNPEFF_AMINO_ACID_CHANGE=I199;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80014856_80014987;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PAWR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328827    GT:AD:DP:GQ:PL    0/1:38,48:86:99:1420,0,1114
12    80175764    rs2111687    G    A    194.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261207    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:227,18,0
12    80200891    rs10778690    T    C    850.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=35.45;ReadPosRankSum=1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261207    GT:AD:DP:GQ:PL    1/1:1,23:24:66.18:884,66,0
12    80201271    rs34190005    TTA    T    168.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=19.3182;IndelType=D;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261207    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:210,15,0
12    80203340    rs6539474    G    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261207    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    80215100    rs11114252    G    A    112.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.06;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261207    GT:AD:DP:GQ:PL    0/1:3,4:7:99:142,0,103
12    80216060    rs3849223    C    A    867.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261207    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:901,66,0
12    80225987    rs3789989    A    G    491.80    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.275;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.745;QD=14.05;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261207    GT:AD:DP:GQ:PL    0/1:16,19:35:99:522,0,524
12    80328847    rs2305294    G    A    82.53    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=11.79;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261207    GT:AD:DP:GQ:PL    0/1:3,4:7:93.41:113,0,93
12    80602001    rs1244908    T    C    184.65    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.58;QD=18.47;ReadPosRankSum=0.296;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    0/1:3,7:10:96.55:215,0,97
12    80626970    rs1451105    T    G    138.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:171,15,0
12    80645734    rs79272137    A    AT    1293.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=7;HaplotypeScore=146.1501;IndelType=I;MQ=59.63;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:2,37:39:99:1335,111,0
12    80645799    rs2100258    A    T    2410.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.98;MQ0=0;QD=28.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2443,217,0
12    80647155    rs10862083    A    G    1084.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.73;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,33:33:93.26:1118,93,0
12    80648148    rs67189718    ATTTAT    A    355.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=49.2386;IndelType=D;MQ=52.85;MQ0=0;QD=44.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:397,24,0
12    80648399    rs7295623    C    T    1754.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.52;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1788,129,0
12    80655692    rs10778721    G    A    2099.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2133,169,0
12    80660499    rs7313132    T    C    905.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,31:31:84.21:938,84,0
12    80663825    rs67954067    GA    G    846.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.33;DB;DP=49;FS=0.0;HRun=13;HaplotypeScore=189.8176;IndelType=D;MQ=60.17;MQ0=0;MQRankSum=-0.04;QD=17.28;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:6,43:49:99:889,99,0
12    80665397    rs4483657    A    G    2082.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2116,162,0
12    80672064    rs1376384    A    G    170.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
12    80672533    rs10862084    C    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    80707153    rs1037335    C    T    575.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:609,48,0
12    80712307    rs7963215    A    C    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    80712420    rs10778725    G    A    744.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_AMINO_ACID_CHANGE=P1234;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80712326_80712493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,24:24:57.18:777,57,0
12    80722385    rs71094975    C    CT    847.67    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.158;DB;DP=44;FS=2.719;HRun=10;HaplotypeScore=182.3712;IndelType=I;MQ=58.92;MQ0=0;MQRankSum=0.142;QD=19.27;ReadPosRankSum=0.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    0/1:12,32:44:96.65:887,0,97
12    80730664    rs10862093    G    A    1520.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1553,114,0
12    80735771    rs10778727    T    C    2276.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=35.58;SNPEFF_AMINO_ACID_CHANGE=N1677;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80735728_80735942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547103    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2310,178,0
12    80746234    .    G    GAAT    5630.81    PASS    AC=2;AF=1.00;AN=2;DP=92;FS=0.0;HRun=0;HaplotypeScore=258.3487;IndelType=I;MQ=55.82;MQ0=0;QD=61.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:7,85:92:99:5631,253,0
12    80747242    rs7297767    A    G    2771.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=I1828V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80747105_80747290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547103    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2804,211,0
12    80749392    rs6539501    A    T    202.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:235,18,0
12    80750741    rs5799468    G    GA    1986.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.0;HRun=7;HaplotypeScore=150.6387;IndelType=I;MQ=60.31;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:8,58:66:99:2028,169,0
12    80752660    rs2034528    A    G    2831.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=I2062V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80752640_80752680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547103    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2864,208,0
12    80760470    rs75493716    GT    G    377.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=6;HaplotypeScore=38.8928;IndelType=D;MQ=59.13;MQ0=0;QD=26.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:1,13:14:39.10:419,39,0
12    80761430    rs1551118    G    A    2401.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_AMINO_ACID_CHANGE=A149T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80761341_80761519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550182    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2434,181,0
12    80761465    rs2717482    G    A    2840.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9788;MQ=59.72;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=T160;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80761341_80761519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000550182    GT:AD:DP:GQ:PL    1/1:0,82:83:99:2873,214,0
12    80762163    rs72180631    T    TCC    2024.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=8;HaplotypeScore=221.2096;IndelType=I;MQ=61.03;MQ0=0;QD=32.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:16,45:62:99:2066,143,0
12    80762246    rs10778730    G    A    523.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.56;MQ0=0;QD=37.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:557,42,0
12    80764129    rs10862098    A    C    237.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:270,21,0
12    80764204    rs34672210    CTT    C    986.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=92.1322;IndelType=D;MQ=60.0;MQ0=0;QD=46.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,21:21:63.22:1029,63,0
12    80764656    rs1451103    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550182    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
12    80765683    rs5799469    TG    T    352.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=130.3468;IndelType=D;MQ=42.94;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550182    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:394,33,0
12    80765685    .    AAG    A    429.21    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=0;HaplotypeScore=129.2852;IndelType=D;MQ=42.94;MQ0=0;QD=39.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550182    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:471,33,0
12    80765741    rs1037336    C    T    1222.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=53.95;MQ0=0;QD=33.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550182    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1255,96,0
12    80765800    rs1551122    A    G    2726.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.29;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=N2225S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80765799_80765844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547103    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2759,208,0
12    80765933    rs10862100    C    G    1357.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.93;MQ0=0;QD=36.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550182    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1390,102,0
12    80765945    rs63331564    G    A    675.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550182    GT:AD:DP:GQ:PL    1/1:0,29:29:54.18:708,54,0
12    80770764    rs10862101    A    G    202.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458043    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:235,18,0
12    80771813    rs2717477    G    A    1326.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.89;SNPEFF_AMINO_ACID_CHANGE=T2328;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_80771628_80772855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOGL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547103    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1359,99,0
12    81063264    rs1163041    C    T    287.64    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.114;DB;DP=39;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.644;QD=7.38;ReadPosRankSum=-0.986;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266688    GT:AD:DP:GQ:PL    0/1:24,15:39:99:318,0,657
12    81063938    rs10506831    T    G    69.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.88;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266688    GT:AD:DP:GQ:PL    0/1:3,4:7:99:99,0,105
12    81066851    rs950124    A    G    63.55    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=6.35;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266688    GT:AD:DP:GQ:PL    0/1:7,3:10:93.54:94,0,239
12    81101251    rs7312846    C    T    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228641    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
12    81110765    rs1163261    A    G    32.85    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.382;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.083;QD=2.19;ReadPosRankSum=-1.083;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_12_81110691_81111343;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228644    GT:AD:DP:GQ:PL    0/1:12,3:15:62.84:63,0,370
12    81112882    rs11114581    A    C    336.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.231;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.282;QD=12.95;ReadPosRankSum=1.128;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228644    GT:AD:DP:GQ:PL    0/1:13,13:26:99:367,0,401
12    81205690    rs3782169    A    G    77.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552864    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
12    81226432    rs12297928    G    A    86.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552864    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
12    81226436    rs12311734    C    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552864    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
12    81329536    rs2682818    A    C    714.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.374;DB;DP=49;Dels=0.0;FS=1.191;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.515;QD=14.58;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549417    GT:AD:DP:GQ:PL    0/1:21,28:49:99:744,0,696
12    81533078    rs2107415    G    C    358.32    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.14;DB;DP=33;Dels=0.0;FS=3.837;HRun=0;HaplotypeScore=0.7887;MQ=58.01;MQ0=0;MQRankSum=2.332;QD=10.86;ReadPosRankSum=-0.127;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549175    GT:AD:DP:GQ:PL    0/1:18,15:33:99:388,0,582
12    81624720    rs1950100    T    A    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261206    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
12    81624964    rs2293651    A    T    135.84    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=10.45;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261206    GT:AD:DP:GQ:PL    0/1:7,6:13:99:166,0,253
12    81647065    rs2895868    G    A    2757.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.688;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7653;MQ=59.47;MQ0=0;MQRankSum=1.338;QD=34.91;ReadPosRankSum=-1.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549396    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2791,177,0
12    81647471    rs2400895    T    A    1848.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=34.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549396    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1881,144,0
12    81655861    rs2272501    G    C    456.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:489,36,0
12    81656865    rs2272502    T    A    367.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:400,30,0
12    81660963    rs77490606    C    CA    1257.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=8;HaplotypeScore=203.8615;IndelType=I;MQ=46.88;MQ0=0;QD=27.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    1/1:15,30:42:99:1299,114,0
12    81660977    rs71822940    C    CT    227.63    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=0.455;DB;DP=49;FS=1.377;HRun=14;HaplotypeScore=376.633;IndelType=I;MQ=48.13;MQ0=0;MQRankSum=-3.148;QD=4.46;ReadPosRankSum=-0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    0/1:37,12:49:99:267,0,262
12    81661039    rs12826016    G    A    1848.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=53.06;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1882,150,0
12    81661945    rs6539566    A    T    267.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.22;MQ0=0;QD=12.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    1/1:0,21:21:27.05:301,27,0
12    81688904    rs140539557    C    G    218.64    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.536;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.102;QD=9.94;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    0/1:14,8:22:99:249,0,488
12    81688958    rs1882188    C    G    295.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
12    82147487    rs4409919    T    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333447    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
12    82751062    rs35874290    TATC    T    1341.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=128.8366;IndelType=D;MQ=54.47;MQ0=0;QD=43.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256151    GT:AD:DP:GQ:PL    1/1:3,28:31:84.29:1384,84,0
12    82751167    rs2401035    T    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256151    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
12    82751955    rs6539662    A    G    783.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256151    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:817,66,0
12    82752633    rs4882530    G    A    225.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248306    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:258,21,0
12    82783668    rs10778908    C    T    2949.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=I166;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_82783595_82783701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248306    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2983,217,0
12    82792787    rs4296098    C    A    1270.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_AMINO_ACID_CHANGE=Q249K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_82792574_82793173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248306    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1303,99,0
12    82828426    rs10683876    T    TATAAG    3063.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=106.5461;IndelType=I;MQ=53.53;MQ0=0;QD=90.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248306    GT:AD:DP:GQ:PL    1/1:2,32:34:99:3106,102,0
12    82832418    rs2717448    G    A    794.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248306    GT:AD:DP:GQ:PL    1/1:0,23:23:66.17:828,66,0
12    82850427    rs2731290    A    G    465.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248306    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:498,39,0
12    85261005    rs79714331    T    C    597.83    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=41;Dels=0.0;FS=16.947;HRun=1;HaplotypeScore=1.6644;MQ=59.44;MQ0=0;MQRankSum=1.718;QD=14.58;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551818    GT:AD:DP:GQ:PL    0/1:20,21:41:99:628,0,695
12    85277561    rs17183577    T    A    553.68    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.015;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=14.57;ReadPosRankSum=2.718;SNPEFF_AMINO_ACID_CHANGE=D278V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_85274685_85277819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450363    GT:AD:DP:GQ:PL    0/1:15,23:38:99:584,0,532
12    85277608    rs17183612    C    T    420.04    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.668;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=13.55;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=L262;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_85274685_85277819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450363    GT:AD:DP:GQ:PL    0/1:16,15:31:99:450,0,582
12    85285920    rs36111430    T    TA    103.82    PASS    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=0.815;DB;DP=35;FS=3.854;HRun=17;HaplotypeScore=299.2906;IndelType=I;MQ=50.68;MQ0=0;MQRankSum=-0.543;QD=2.97;ReadPosRankSum=-1.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551388    GT:AD:DP:GQ:PL    0/1:23,9:35:46.39:143,0,46
12    85440932    rs144116924    AAAAAAAATT    A    471.59    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=131.2575;IndelType=D;MQ=44.39;MQ0=0;MQRankSum=-3.016;QD=31.44;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRRIQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256007    GT:AD:DP:GQ:PL    0/1:8,7:14:99:511,0,541
12    85449465    rs7974418    T    A    533.49    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=55;Dels=0.0;FS=5.948;HRun=0;HaplotypeScore=0.5784;MQ=59.24;MQ0=0;MQRankSum=0.586;QD=9.7;ReadPosRankSum=2.493;SNPEFF_AMINO_ACID_CHANGE=V273;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_85449325_85450962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRRIQ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378580    GT:AD:DP:GQ:PL    0/1:35,20:55:99:563,0,1170
12    85451017    rs6539881    G    C    953.47    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.558;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.748;QD=18.7;ReadPosRankSum=-0.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRRIQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256007    GT:AD:DP:GQ:PL    0/1:23,28:51:99:983,0,811
12    85492908    rs359989    A    G    42.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.68;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRRIQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256007    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:73,0,70
12    85521877    .    T    C    310.90    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.0;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.634;QD=16.36;ReadPosRankSum=-1.564;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRRIQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256007    GT:AD:DP:GQ:PL    0/1:7,12:19:99:341,0,223
12    85531757    .    A    AACTATAGTATATAAAT    939.74    PASS    AB=0.911;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.339;DP=51;FS=5.153;HRun=0;HaplotypeScore=568.1227;IndelType=I;MQ=55.52;MQ0=0;MQRankSum=-2.575;QD=18.43;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRRIQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378580    GT:AD:DP:GQ:PL    0/1:46,4:51:99:979,0,3559
12    85547749    rs60165614    G    A    299.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.37;QD=24.97;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRRIQ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378580    GT:AD:DP:GQ:PL    0/1:3,9:12:64.52:330,0,65
12    86198594    rs11831336    A    G    1940.48    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.118;DB;DP=146;Dels=0.0;FS=4.085;HRun=1;HaplotypeScore=0.0;MQ=59.87;MQ0=0;MQRankSum=0.86;QD=13.29;ReadPosRankSum=0.213;SNPEFF_AMINO_ACID_CHANGE=T398;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_86198331_86199740;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361228    GT:AD:DP:GQ:PL    0/1:76,70:146:99:1970,0,2379
12    86198935    rs7397266    C    T    3425.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.481;DB;DP=232;DS;Dels=0.0;FS=2.235;HRun=0;HaplotypeScore=2.7229;MQ=59.8;MQ0=0;MQRankSum=-0.715;QD=14.77;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=A285T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_86198331_86199740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361228    GT:AD:DP:GQ:PL    0/1:116,116:232:99:3426,0,3730
12    86199916    rs112897128    T    C    123.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361228    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:156,12,0
12    86268015    rs2234762    C    G    192.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256010    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:225,18,0
12    86268483    rs11615953    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256010    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
12    86270609    rs112838319    G    GA    185.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=11;FS=0.0;HRun=10;HaplotypeScore=39.7458;IndelType=I;MQ=57.75;MQ0=0;MQRankSum=-0.751;QD=16.86;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256010    GT:AD:DP:GQ:PL    1/1:4,7:11:2.39:224,2,0
12    86272378    rs58553548    A    T    452.11    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.087;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.259;QD=13.3;ReadPosRankSum=-0.707;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256010    GT:AD:DP:GQ:PL    0/1:16,18:34:99:482,0,503
12    86373221    rs17855890    G    C    706.44    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4607;MQ=60.0;MQ0=0;MQRankSum=-0.617;QD=10.7;ReadPosRankSum=-0.478;SNPEFF_AMINO_ACID_CHANGE=T428S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_86372516_86374208;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT4C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332156    GT:AD:DP:GQ:PL    0/1:40,25:66:99:736,0,1351
12    88379566    rs10858676    A    G    958.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298699    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:992,75,0
12    88440676    rs9262    G    C    2325.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_AMINO_ACID_CHANGE=V238L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_88440584_88440753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf29;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356891    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2358,178,0
12    88453608    rs2471512    C    T    1242.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1275,99,0
12    88454594    rs11405846    T    TA    1449.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=48;FS=0.0;HRun=8;HaplotypeScore=104.0797;IndelType=I;MQ=61.12;MQ0=0;MQRankSum=0.038;QD=30.2;ReadPosRankSum=0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    1/1:4,44:48:99:1491,112,0
12    88470954    rs45477793    C    G    1744.72    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.409;DB;DP=115;Dels=0.0;FS=8.159;HRun=0;HaplotypeScore=0.8667;MQ=59.47;MQ0=0;MQRankSum=-0.109;QD=15.17;ReadPosRankSum=0.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    0/1:58,57:115:99:1775,0,1823
12    88473049    rs2468245    C    T    1450.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=38.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1484,108,0
12    88478082    rs2468248    C    T    34.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
12    88478316    rs78434466    TA    T    3300.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;FS=0.0;HRun=7;HaplotypeScore=302.9646;IndelType=D;MQ=60.35;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    1/1:3,109:112:99:3301,325,0
12    88483272    rs10717563    TA    T    1401.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=8;HaplotypeScore=160.8124;IndelType=D;MQ=60.17;MQ0=0;QD=24.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    1/1:6,51:57:99:1443,150,0
12    88496838    rs2471532    C    G    1686.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_88496615_88497965;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547691    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1720,132,0
12    88505078    rs2468255    T    C    1888.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=S756;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_88504979_88505128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536998    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1921,150,0
12    88505633    rs45465996    A    G    396.86    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.436;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.23;ReadPosRankSum=-0.894;SNPEFF_AMINO_ACID_CHANGE=Y540H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_88505471_88505635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545139    GT:AD:DP:GQ:PL    0/1:16,14:30:99:427,0,574
12    88508753    rs11610390    T    A    154.45    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=22.06;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    0/1:2,5:7:60.17:184,0,60
12    88522823    rs71082425    A    AC    3362.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.0;HRun=0;HaplotypeScore=143.3455;IndelType=I;MQ=60.87;MQ0=0;QD=47.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550962    GT:AD:DP:GQ:PL    1/1:0,71:71:99:3362,214,0
12    88522936    rs79458642    C    CTTA    462.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=20.719;IndelType=I;MQ=58.46;MQ0=0;QD=57.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550962    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:504,24,0
12    88525048    rs111430178    AT    A    81.79    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=11;FS=0.0;HRun=14;HaplotypeScore=31.4125;IndelType=D;MQ=59.88;MQ0=0;MQRankSum=0.747;QD=7.44;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552770    GT:AD:DP:GQ:PL    0/1:4,7:11:4.05:120,0,4
12    88535298    rs71082427    C    CA    228.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=13.7902;IndelType=I;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP290;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309041    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:270,18,0
12    88541920    rs2468227    C    T    144.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266712    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:177,15,0
12    88546982    rs2468229    A    G    466.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266712    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:500,39,0
12    88547277    rs2468230    T    C    1029.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_AMINO_ACID_CHANGE=H133;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_88547068_88547286;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266712    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1062,78,0
12    88554745    rs2471545    A    C    412.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551088    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:446,33,0
12    88925973    rs1492347    T    C    80.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KITLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228280    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
12    89743223    rs704075    G    A    3410.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_AMINO_ACID_CHANGE=D172;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_89742146_89743338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308385    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3410,253,0
12    89744773    rs770087    A    C    32.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.45;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=S144A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_89744365_89744802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279488    GT:AD:DP:GQ:PL    0/1:2,3:5:62.22:62,0,69
12    89853408    rs4842658    G    A    742.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.32;MQ0=0;QD=23.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539190    GT:AD:DP:GQ:PL    1/1:0,32:32:60.18:776,60,0
12    89861265    rs9308287    C    G    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313546    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    89861529    rs10506972    T    C    84.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313546    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
12    89864432    rs10777167    T    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313546    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    89865545    rs10665702    C    CTTT    922.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=16;HaplotypeScore=691.6043;IndelType=I;MQ=47.4;MQ0=0;QD=13.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313546    GT:AD:DP:GQ:PL    1/1:48,18:67:98.03:965,98,0
12    89885923    rs6538189    C    A    952.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313546    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:986,72,0
12    89885942    rs6538190    T    C    583.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313546    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:617,45,0
12    89894267    rs10777172    T    C    2793.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.57;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313546    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2827,217,0
12    89917518    rs2230281    A    G    1929.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.19;SNPEFF_AMINO_ACID_CHANGE=I267T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_89913185_89918217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1109F11.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000548729    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1962,144,0
12    89919568    rs10777184    C    T    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=POC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313546    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    89938590    rs11105325    G    A    1214.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1248,96,0
12    90015579    rs35089871    C    CA    1249.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.803;DB;DP=85;FS=0.0;HRun=12;HaplotypeScore=436.7932;IndelType=I;MQ=58.24;MQ0=0;MQRankSum=0.471;QD=14.7;ReadPosRankSum=0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261173    GT:AD:DP:GQ:PL    1/1:24,53:85:63.94:1291,64,0
12    91334194    rs4520662    T    C    566.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548187    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:599,48,0
12    91357786    rs5799968    C    CATTAT    359.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=16.5841;IndelType=I;MQ=57.52;MQ0=0;QD=71.94;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261172    GT:AD:DP:GQ:PL    1/1:0,4:5:15.05:402,15,0
12    91358169    rs1920741    T    C    548.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261172    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:582,45,0
12    91358256    rs1920740    A    G    130.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261172    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
12    91372042    rs66600255    GA    G    563.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-3.099;DB;DP=69;FS=0.0;HRun=16;HaplotypeScore=307.0853;IndelType=D;MQ=58.17;MQ0=0;MQRankSum=2.709;QD=8.17;ReadPosRankSum=2.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261172    GT:AD:DP:GQ:PL    1/1:25,38:69:51.95:606,52,0
12    91396006    rs1920750    G    A    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=18.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPYC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261172    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:164,12,0
12    91449990    rs2735333    C    T    1067.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=-0.893;QD=30.51;ReadPosRankSum=0.473;SNPEFF_AMINO_ACID_CHANGE=V23;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_91449173_91450066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KERA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266719    GT:AD:DP:GQ:PL    1/1:1,34:35:65.59:1101,66,0
12    92539344    rs709223    T    C    153.60    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6609;MQ=58.2;MQ0=0;MQRankSum=-1.239;QD=11.82;ReadPosRankSum=0.6;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552315    GT:AD:DP:GQ:PL    0/1:4,9:13:99:184,0,116
12    92539378    rs1049979    G    A    76.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.937;QD=10.9;ReadPosRankSum=-1.754;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_92539164_92539673;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256015    GT:AD:DP:GQ:PL    0/1:3,4:7:99:106,0,105
12    92818786    rs1515565    A    G    416.19    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=35;Dels=0.0;FS=2.966;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=11.89;ReadPosRankSum=1.043;SNPEFF_AMINO_ACID_CHANGE=K110;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_92817735_92819710;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC063949.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378485    GT:AD:DP:GQ:PL    0/1:19,16:35:99:446,0,655
12    93131203    rs2036553    A    C    588.91    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.174;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.028;QD=10.91;ReadPosRankSum=0.395;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549856    GT:AD:DP:GQ:PL    0/1:33,21:54:99:619,0,1135
12    93147907    rs9669519    A    T    804.10    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=51;Dels=0.0;FS=1.096;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=1.583;QD=15.77;ReadPosRankSum=0.359;SNPEFF_AMINO_ACID_CHANGE=P119;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_93147866_93148040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHG7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344636    GT:AD:DP:GQ:PL    0/1:26,24:51:99:834,0,805
12    93150102    rs924326    T    C    709.87    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.476;DB;DP=52;Dels=0.0;FS=4.409;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.612;QD=13.65;ReadPosRankSum=-0.128;SNPEFF_AMINO_ACID_CHANGE=M212T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_93150074_93150167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHG7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344636    GT:AD:DP:GQ:PL    0/1:27,25:52:99:740,0,904
12    93155535    rs1504907    G    A    1009.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=T236;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_93155528_93155607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLEKHG7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344636    GT:AD:DP:GQ:PL    1/1:0,33:33:75.25:1042,75,0
12    93171278    rs4760496    T    G    772.14    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DB;DP=72;Dels=0.0;FS=3.752;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.31;QD=10.72;ReadPosRankSum=0.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    0/1:43,29:72:99:802,0,1383
12    93196422    rs10745623    T    G    621.51    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=45;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.397;QD=13.81;ReadPosRankSum=0.965;SNPEFF_AMINO_ACID_CHANGE=K810Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_93196180_93196510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    0/1:23,22:45:99:652,0,712
12    93202726    rs61933720    G    T    568.48    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.892;DB;DP=30;Dels=0.0;FS=6.235;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-1.549;QD=18.95;ReadPosRankSum=-1.758;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549790    GT:AD:DP:GQ:PL    0/1:13,17:30:99:598,0,461
12    93202801    rs7970286    C    T    485.97    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.5;DB;DP=64;Dels=0.0;FS=2.205;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.015;QD=7.59;ReadPosRankSum=0.257;SNPEFF_AMINO_ACID_CHANGE=E777;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_93202793_93202932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    0/1:43,21:64:99:516,0,1345
12    93206878    rs3925797    G    A    1617.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1651,126,0
12    93210332    rs1604955    A    G    37.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.57;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    0/1:3,2:5:67.83:68,0,110
12    93220255    rs7315238    A    G    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
12    93226666    rs7296923    T    C    320.75    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=11.88;ReadPosRankSum=-1.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540777    GT:AD:DP:GQ:PL    0/1:14,13:27:99:351,0,521
12    93236402    rs7300619    C    T    462.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:495,36,0
12    93236419    rs7316894    T    G    143.53    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=13.05;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    0/1:6,5:11:99:174,0,214
12    93247775    rs3065021    G    GATA    304.59    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.166;DB;DP=19;FS=4.523;HRun=0;HaplotypeScore=58.616;IndelType=I;MQ=58.12;MQ0=0;MQRankSum=-0.251;QD=16.03;ReadPosRankSum=-1.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547833    GT:AD:DP:GQ:PL    0/1:13,5:19:99:344,0,472
12    93250868    rs73219703    T    A    62.83    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.71;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547833    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:93,0,30
12    93258498    rs11106721    A    G    76.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553019    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:107,0,30
12    93258665    rs17194451    A    G    540.88    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.117;DB;DP=50;Dels=0.0;FS=6.044;HRun=0;HaplotypeScore=1.9849;MQ=59.54;MQ0=0;MQRankSum=-0.623;QD=10.82;ReadPosRankSum=3.491;SNPEFF_AMINO_ACID_CHANGE=H71;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_93258636_93258763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540777    GT:AD:DP:GQ:PL    0/1:28,22:50:99:571,0,859
12    93258808    rs61935280    T    C    137.05    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.805;QD=8.06;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    0/1:10,7:17:99:167,0,360
12    93278060    rs1809871    C    T    1480.58    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.361;DB;DP=130;Dels=0.0;FS=5.333;HRun=0;HaplotypeScore=0.0;MQ=57.56;MQ0=0;MQRankSum=1.198;QD=11.39;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322349    GT:AD:DP:GQ:PL    0/1:72,58:130:99:1511,0,2213
12    94543506    rs2230754    C    T    66.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=9;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.38;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=Y253;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_94542499_94543809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:6,3:9:96.44:96,0,152
12    94562875    rs2361359    C    G    77.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.57;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:108,0,65
12    94563134    rs63239861    A    AT    124.39    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=23;FS=0.0;HRun=7;HaplotypeScore=48.7735;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.609;QD=5.41;ReadPosRankSum=1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:17,6:23:99:163,0,294
12    94575157    rs3794220    C    T    526.44    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8324;MQ=56.35;MQ0=0;MQRankSum=-0.975;QD=20.25;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:10,16:26:99:556,0,342
12    94603249    rs2610671    G    A    2775.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2808,226,0
12    94603300    rs2305971    C    T    2209.36    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.302;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.48;MQ0=0;MQRankSum=0.164;QD=13.72;ReadPosRankSum=-0.343;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:84,77:161:99:2239,0,2505
12    94613587    rs12371865    A    G    36.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.6832;MQ=44.98;MQ0=0;MQRankSum=0.72;QD=5.22;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:2,4:7:52.91:67,0,53
12    94621138    rs2291332    G    A    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:3,2:5:67.95:68,0,99
12    94637886    rs76373815    T    C    133.72    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.72;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:3,5:8:98.70:164,0,99
12    94645255    rs2230757    A    G    452.62    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.294;DB;DP=36;Dels=0.0;FS=1.348;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.347;QD=12.57;ReadPosRankSum=-0.149;SNPEFF_AMINO_ACID_CHANGE=T944;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_94645202_94645304;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:17,19:36:99:483,0,493
12    94648493    rs7980141    A    G    516.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:550,42,0
12    94649103    rs865569    T    C    298.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:332,27,0
12    94653227    rs2306664    T    C    720.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549810    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:753,57,0
12    94688232    rs1880934    C    A    273.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:307,24,0
12    94692628    rs144449115    AAAAG    A    256.14    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=64.4395;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=1.517;QD=18.3;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:8,6:14:99:295,0,440
12    94694872    rs55787485    T    G    250.87    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.187;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.503;QD=5.83;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258526    GT:AD:DP:GQ:PL    0/1:33,10:43:99:281,0,1017
12    94729286    rs56215078    A    T    180.17    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=22.52;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339839    GT:AD:DP:GQ:PL    0/1:1,7:8:21.58:210,0,22
12    94763899    rs117829816    C    T    1029.82    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=5.111;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.022;QD=18.39;ReadPosRankSum=-1.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339839    GT:AD:DP:GQ:PL    0/1:23,33:56:99:1060,0,603
12    94769758    rs4761611    A    G    1084.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=R246;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_94769662_94769793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397807    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1118,84,0
12    94769769    rs74340001    G    A    501.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=16.71;ReadPosRankSum=1.452;SNPEFF_AMINO_ACID_CHANGE=R243W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_94769662_94769793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397807    GT:AD:DP:GQ:PL    0/1:15,15:30:99:531,0,482
12    94805735    rs79115110    C    T    149.86    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.98;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546527    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:180,0,24
12    94965058    rs1290910    G    C    207.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261226    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
12    94972290    rs2270893    C    T    299.77    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.782;DB;DP=21;Dels=0.0;FS=3.222;HRun=1;HaplotypeScore=0.9578;MQ=58.89;MQ0=0;MQRankSum=0.176;QD=14.27;ReadPosRankSum=2.57;SNPEFF_AMINO_ACID_CHANGE=E306;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_94972170_94972305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551457    GT:AD:DP:GQ:PL    0/1:10,11:21:99:330,0,338
12    94975799    rs3747553    G    A    1518.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.698;DB;DP=100;Dels=0.0;FS=6.541;HRun=2;HaplotypeScore=0.8321;MQ=59.58;MQ0=0;MQRankSum=-0.766;QD=15.19;ReadPosRankSum=-0.283;SNPEFF_AMINO_ACID_CHANGE=F167;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_94975398_94976314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551457    GT:AD:DP:GQ:PL    0/1:50,50:100:99:1549,0,1283
12    94976084    rs3747552    T    C    2312.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.43;MQ0=0;QD=31.68;SNPEFF_AMINO_ACID_CHANGE=A103;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_94975398_94976314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261226    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2346,181,0
12    94976159    rs3747551    T    C    3112.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=V47;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_94975903_94976314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000548918    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3146,238,0
12    94976383    rs3747550    T    A    659.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.71;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261226    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:692,51,0
12    95228007    rs2289031    T    G    327.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=56.35;MQ0=0;QD=25.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-3K15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557173    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:360,30,0
12    95396669    rs6538588    A    T    265.45    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=20.42;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327772    GT:AD:DP:GQ:PL    0/1:5,8:13:99:295,0,168
12    95397552    rs835044    T    C    93.17    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=7.17;ReadPosRankSum=-1.381;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327772    GT:AD:DP:GQ:PL    0/1:8,5:13:99:123,0,273
12    95442724    rs183656    C    T    241.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.783;DB;DP=16;Dels=0.0;FS=6.32;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.368;QD=15.1;ReadPosRankSum=-1.943;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548252    GT:AD:DP:GQ:PL    0/1:8,8:16:99:272,0,252
12    95479922    rs2043368    G    A    81.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:111,0,27
12    95498747    rs140180544    GA    G    170.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.116;DB;DP=36;FS=0.0;HRun=17;HaplotypeScore=247.6397;IndelType=D;MQ=54.37;MQ0=0;MQRankSum=1.273;QD=4.73;ReadPosRankSum=0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    1/1:28,8:36:13:212,13,0
12    95498761    .    AAAAG    A    533.02    PASS    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.442;DP=40;FS=1.528;HRun=0;HaplotypeScore=287.7148;IndelType=D;MQ=54.96;MQ0=0;MQRankSum=0.168;QD=13.33;ReadPosRankSum=-2.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    0/1:33,7:40:99:572,0,490
12    95498764    .    AG    A    391.67    PASS    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=2.885;DP=40;FS=18.205;HRun=1;HaplotypeScore=249.8741;IndelType=D;MQ=54.96;MQ0=0;MQRankSum=1.469;QD=9.79;ReadPosRankSum=-0.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    0/1:34,5:40:93.06:431,0,93
12    95500635    rs61938198    A    G    181.03    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=47.06;MQ0=0;MQRankSum=0.635;QD=11.31;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    0/1:7,9:16:99:211,0,219
12    95500700    rs10694512    A    AAACAAAACAAAAC    5799.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=0;HaplotypeScore=618.8228;IndelType=I;MQ=48.06;MQ0=0;QD=92.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    1/1:5,46:63:99:5799,190,0
12    95500701    .    A    G    38.62    HaplotypeScoreFilter13;QDFilter2    AB=0.968;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.773;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=40.8832;MQ=48.06;MQ0=0;MQRankSum=0.299;QD=0.61;ReadPosRankSum=-2.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    0/1:60,2:63:54.83:69,0,55
12    95500727    rs7138545    C    G    1285.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.46;MQ0=0;QD=17.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    1/1:0,73:73:99:1318,108,0
12    95502519    rs6538591    A    C    109.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:142,12,0
12    95531442    rs11829776    T    C    275.21    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.627;DB;DP=31;Dels=0.0;FS=1.609;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.993;QD=8.88;ReadPosRankSum=0.021;SNPEFF_AMINO_ACID_CHANGE=Q950;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_95531298_95531454;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    0/1:21,10:31:99:305,0,648
12    95535471    rs80026193    C    G    77.25    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:107,0,29
12    95602672    rs2306884    C    T    649.14    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.039;DB;DP=43;Dels=0.0;FS=10.103;HRun=0;HaplotypeScore=0.9983;MQ=58.92;MQ0=0;MQRankSum=-0.477;QD=15.1;ReadPosRankSum=0.379;SNPEFF_AMINO_ACID_CHANGE=P796;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_95602619_95605043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343958    GT:AD:DP:GQ:PL    0/1:19,24:43:99:679,0,531
12    95639261    rs7979908    G    A    2825.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VEZT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261219    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2859,211,0
12    95689736    rs7295441    A    G    142.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.062;QD=9.49;ReadPosRankSum=-1.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VEZT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546398    GT:AD:DP:GQ:PL    0/1:9,6:15:99:172,0,319
12    95694394    rs14121    G    A    1198.06    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.451;DB;DP=84;Dels=0.0;FS=2.982;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.533;QD=14.26;ReadPosRankSum=-0.579;SNPEFF_AMINO_ACID_CHANGE=G714D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_95693941_95694944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VEZT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261219    GT:AD:DP:GQ:PL    0/1:44,40:84:99:1228,0,1279
12    95879734    rs2305293    C    T    877.39    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=4.663;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8663;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=10.57;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=C111;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_95879655_95879757;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553151    GT:AD:DP:GQ:PL    0/1:50,32:83:99:907,0,1369
12    95888603    rs12369757    G    A    37.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.44;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546478    GT:AD:DP:GQ:PL    0/1:2,3:5:67.18:67,0,68
12    95897997    rs2769469    T    C    454.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261220    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:488,39,0
12    95914758    rs11108086    T    C    415.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.934;DB;DP=38;Dels=0.0;FS=3.928;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=10.94;ReadPosRankSum=-0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552237    GT:AD:DP:GQ:PL    0/1:19,19:38:99:446,0,564
12    95927762    rs3812813    T    C    281.88    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.279;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.209;QD=12.26;ReadPosRankSum=1.147;SNPEFF_AMINO_ACID_CHANGE=T91A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_95926605_95928102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP44;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258499    GT:AD:DP:GQ:PL    0/1:13,10:23:99:312,0,446
12    95928113    rs11108094    C    A    238.97    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=18.38;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258499    GT:AD:DP:GQ:PL    0/1:5,8:13:99:269,0,168
12    95966944    rs4762567    A    G    143.09    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.953;QD=8.94;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,7:16:99:173,0,294
12    96077312    rs17851048    C    T    753.50    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.358;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.52;MQ0=0;MQRankSum=1.675;QD=11.25;ReadPosRankSum=-0.324;SNPEFF_AMINO_ACID_CHANGE=A415;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96077274_96077487;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344911    GT:AD:DP:GQ:PL    0/1:37,30:67:99:783,0,965
12    96104138    rs2254316    T    C    347.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552603    GT:AD:DP:GQ:PL    1/1:0,11:12:30.10:380,30,0
12    96132079    rs11108226    C    T    84.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343702    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:116,9,0
12    96259897    rs147311324    ATTTG    A    383.71    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=3.467;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=200.4691;IndelType=D;MQ=59.62;MQ0=0;MQRankSum=0.527;QD=10.66;ReadPosRankSum=-0.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    0/1:26,10:36:99:423,0,1049
12    96259951    rs17369927    G    A    269.10    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.354;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=59.94;MQ0=0;MQRankSum=1.508;QD=11.7;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    0/1:12,11:23:99:299,0,440
12    96259992    rs703693    T    C    354.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.94;MQ0=0;QD=32.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:388,33,0
12    96260947    rs7960706    A    G    501.10    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=3.359;DB;DP=55;Dels=0.0;FS=1.38;HRun=1;HaplotypeScore=1.367;MQ=59.16;MQ0=0;MQRankSum=0.403;QD=9.11;ReadPosRankSum=-0.546;SNPEFF_AMINO_ACID_CHANGE=F533;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96260827_96260967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    0/1:34,21:55:99:531,0,1064
12    96263376    rs56236436    C    T    679.88    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=43;Dels=0.0;FS=4.201;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.283;QD=15.81;ReadPosRankSum=-1.908;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266735    GT:AD:DP:GQ:PL    0/1:18,25:43:99:710,0,622
12    96263437    rs10735335    G    A    197.56    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.079;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.28;MQ0=0;MQRankSum=2.717;QD=10.98;ReadPosRankSum=0.815;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266735    GT:AD:DP:GQ:PL    0/1:11,7:18:99:228,0,271
12    96263439    rs10735336    C    A    560.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.28;MQ0=0;QD=31.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266735    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:593,48,0
12    96263453    rs142067399    TTAAAGG    T    512.37    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=216.4329;IndelType=D;MQ=47.5;MQ0=0;MQRankSum=-2.534;QD=30.14;ReadPosRankSum=-0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266735    GT:AD:DP:GQ:PL    0/1:8,9:17:99:551,0,592
12    96272246    rs11829518    C    T    205.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=58.55;MQ0=0;MQRankSum=-0.578;QD=12.86;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    0/1:8,8:16:99:236,0,280
12    96282427    rs77783810    T    A    71.39    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=10.2;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    0/1:2,5:7:63.20:101,0,63
12    96284650    rs6538681    A    G    679.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=A277;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96284610_96284708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:713,57,0
12    96292170    rs75959092    C    G    1098.11    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.972;DB;DP=78;Dels=0.0;FS=8.162;HRun=0;HaplotypeScore=3.2914;MQ=60.0;MQ0=0;MQRankSum=-0.28;QD=14.08;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=V203L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96292163_96292243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1128,0,1214
12    96300355    rs7976101    G    C    111.36    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=15.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552085    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,100
12    96312570    rs10777750    C    T    225.19    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=20.47;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546803    GT:AD:DP:GQ:PL    0/1:4,7:11:99:255,0,130
12    96312686    rs12368787    C    A    572.07    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.478;DB;DP=46;Dels=0.0;FS=4.291;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.345;QD=12.44;ReadPosRankSum=0.838;SNPEFF_AMINO_ACID_CHANGE=V36F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96312654_96312754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCDC38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344280    GT:AD:DP:GQ:PL    0/1:25,21:46:99:602,0,732
12    96346594    rs1982138    T    C    552.61    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.824;DB;DP=47;Dels=0.0;FS=2.967;HRun=1;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=1.487;QD=11.76;ReadPosRankSum=0.653;SNPEFF_AMINO_ACID_CHANGE=I79;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96346495_96346601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMDHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266736    GT:AD:DP:GQ:PL    0/1:26,21:47:99:583,0,800
12    96356048    rs112878109    A    AAC    260.82    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=18;FS=4.26;HRun=0;HaplotypeScore=56.9908;IndelType=I;MQ=58.98;MQ0=1;MQRankSum=0.163;QD=13.73;ReadPosRankSum=-1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549171    GT:AD:DP:GQ:PL    0/1:12,7:18:99:300,0,411
12    96359301    rs4762657    T    G    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549171    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:68,0,32
12    96359426    rs4762658    C    G    726.85    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.553;DB;DP=50;Dels=0.0;FS=1.455;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.779;QD=14.54;ReadPosRankSum=0.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266736    GT:AD:DP:GQ:PL    0/1:22,28:50:99:757,0,740
12    96359695    rs190735546    G    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266736    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
12    96360506    rs1025607    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266736    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    96374554    rs6538693    G    A    591.24    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=50;Dels=0.0;FS=7.79;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.104;QD=11.82;ReadPosRankSum=0.459;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548636    GT:AD:DP:GQ:PL    0/1:28,22:50:99:621,0,900
12    96374563    rs6538694    T    C    694.18    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=53;Dels=0.0;FS=2.379;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=13.1;ReadPosRankSum=0.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548636    GT:AD:DP:GQ:PL    0/1:28,25:53:99:724,0,910
12    96374614    rs7297245    C    T    710.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.711;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.928;QD=14.81;ReadPosRankSum=-0.175;SNPEFF_AMINO_ACID_CHANGE=V231I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96374576_96374641;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541929    GT:AD:DP:GQ:PL    0/1:24,24:48:99:741,0,782
12    96374672    rs6538695    T    C    270.08    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=25;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=10.8;ReadPosRankSum=-0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548636    GT:AD:DP:GQ:PL    0/1:12,13:25:99:300,0,410
12    96374683    rs6538696    C    T    274.64    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=19;Dels=0.0;FS=2.35;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.755;QD=14.45;ReadPosRankSum=-0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548636    GT:AD:DP:GQ:PL    0/1:10,9:19:99:305,0,339
12    96379806    rs3213737    G    A    1696.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=36.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546579    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1730,129,0
12    96380046    rs56396137    A    G    187.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=23.46;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546579    GT:AD:DP:GQ:PL    0/1:2,6:8:59.80:218,0,60
12    96384063    rs55634581    A    G    389.98    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=24;Dels=0.0;FS=7.877;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.263;QD=16.25;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546579    GT:AD:DP:GQ:PL    0/1:10,14:24:99:420,0,292
12    96384122    rs60881496    T    C    593.12    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=39;Dels=0.0;FS=6.832;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=0.206;QD=15.21;ReadPosRankSum=-1.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546579    GT:AD:DP:GQ:PL    0/1:17,22:39:99:623,0,545
12    96384139    rs57822148    T    C    549.90    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.687;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=59.46;MQ0=0;MQRankSum=-0.862;QD=12.79;ReadPosRankSum=-0.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546579    GT:AD:DP:GQ:PL    0/1:22,21:43:99:580,0,689
12    96384249    rs36014288    T    C    683.44    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=73;Dels=0.0;FS=0.919;HRun=0;HaplotypeScore=1.8857;MQ=59.74;MQ0=0;MQRankSum=1.674;QD=9.36;ReadPosRankSum=-0.716;SNPEFF_AMINO_ACID_CHANGE=P247;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96384171_96384310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552509    GT:AD:DP:GQ:PL    0/1:44,29:73:99:713,0,1306
12    96384345    rs17676826    T    C    331.24    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.592;DB;DP=36;Dels=0.0;FS=3.715;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.822;QD=9.2;ReadPosRankSum=-0.542;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    0/1:22,14:36:99:361,0,597
12    96384497    rs56327032    T    G    114.20    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.84;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:144,0,28
12    96384542    rs4762263    A    G    150.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
12    96386630    rs76668867    T    C    485.33    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.859;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.625;QD=7.96;ReadPosRankSum=-1.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    0/1:36,25:61:99:515,0,1117
12    96386646    rs111580568    G    GCCCT    1110.45    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.583;DB;DP=57;FS=0.0;HRun=0;HaplotypeScore=306.6461;IndelType=I;MQ=58.42;MQ0=0;MQRankSum=-1.262;QD=19.48;ReadPosRankSum=-1.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    0/1:38,17:57:99:1149,0,960
12    96387072    rs2241136    G    A    225.93    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=2.037;QD=20.54;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    0/1:4,7:11:99:256,0,134
12    96387621    rs2302629    A    G    1023.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1057,81,0
12    96387765    rs2302628    T    A    1811.34    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.344;DB;DP=131;Dels=0.0;FS=3.97;HRun=0;HaplotypeScore=2.3639;MQ=59.29;MQ0=0;MQRankSum=-1.287;QD=13.83;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=T141;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_96387704_96387776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    0/1:71,60:131:99:1841,0,2193
12    96388052    rs17024981    G    A    269.43    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.078;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.115;QD=9.29;ReadPosRankSum=0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    0/1:19,10:29:99:299,0,687
12    96388083    rs17024986    T    G    110.82    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.16;ReadPosRankSum=1.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261208    GT:AD:DP:GQ:PL    0/1:13,5:18:99:141,0,427
12    96394517    rs11108372    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA4H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228740    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    96407086    rs12319438    A    G    261.63    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.225;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.184;QD=13.77;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA4H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228740    GT:AD:DP:GQ:PL    0/1:9,10:19:99:292,0,310
12    96408976    rs2072512    T    A    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA4H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228740    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    96409201    rs1978331    A    G    37.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA4H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228740    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
12    96429377    rs17525495    G    A    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.0;QD=8.01;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTA4H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413268    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,64
12    96617304    rs2302902    C    T    270.88    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.22;MQ0=0;MQRankSum=-0.029;QD=11.29;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228741    GT:AD:DP:GQ:PL    0/1:14,10:24:99:301,0,517
12    96653501    rs4762144    C    T    1917.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.6;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228741    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1950,147,0
12    96689027    rs7487420    A    C    33.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.5;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261211    GT:AD:DP:GQ:PL    0/1:4,2:6:63.02:63,0,133
12    96691355    rs5800246    T    TA    998.16    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.667;DB;DP=60;FS=4.407;HRun=1;HaplotypeScore=129.3184;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=2.122;QD=16.64;ReadPosRankSum=1.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261211    GT:AD:DP:GQ:PL    0/1:33,27:60:99:1037,0,1068
12    96694162    rs10777781    G    T    1262.01    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=16.4876;MQ=55.12;MQ0=0;QD=29.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261211    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1295,105,0
12    96921327    rs11309712    GT    G    52.43    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=9;FS=0.0;HRun=13;HaplotypeScore=23.7271;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.83;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298953    GT:AD:DP:GQ:PL    0/1:4,5:9:35.66:91,0,36
12    97045672    rs140967724    GT    G    81.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=11;HaplotypeScore=29.2487;IndelType=D;MQ=61.78;MQ0=0;QD=13.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    1/1:1,5:6:14.98:123,15,0
12    97051632    rs35236856    AT    A    838.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=40;FS=0.0;HRun=10;HaplotypeScore=113.2777;IndelType=D;MQ=60.51;MQ0=0;MQRankSum=-1.155;QD=20.97;ReadPosRankSum=1.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    1/1:4,36:40:77.36:881,77,0
12    97078749    rs7306382    A    G    91.16    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=7.01;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    0/1:9,4:13:99:121,0,330
12    97079040    rs79677423    C    T    73.26    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.17;MQ0=0;MQRankSum=-2.11;QD=2.93;ReadPosRankSum=1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    0/1:15,10:25:99:103,0,287
12    97079041    rs7974435    C    G    375.52    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.92;MQ0=0;QD=16.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    1/1:0,23:23:41.96:409,42,0
12    97079043    rs7974634    G    A    380.24    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.05;MQ0=0;QD=15.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    1/1:0,24:24:41.98:413,42,0
12    97085107    rs4762319    A    C    793.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:826,66,0
12    97098415    rs10860069    C    T    226.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:259,21,0
12    97098549    rs11108643    T    C    719.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=L2168P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_97098521_97098574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524981    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:752,57,0
12    97102578    rs7968231    G    A    2584.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=E2241K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_97102386_97102581;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524981    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2617,202,0
12    97102700    rs34277638    TTATA    T    255.90    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=58.7237;IndelType=D;MQ=55.35;MQ0=0;MQRankSum=-0.779;QD=19.68;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    0/1:7,6:13:99:295,0,457
12    97133737    rs17326839    T    G    612.84    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.013;DB;DP=46;Dels=0.0;FS=4.93;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=13.32;ReadPosRankSum=1.616;SNPEFF_AMINO_ACID_CHANGE=A2323;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_97133734_97133839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524981    GT:AD:DP:GQ:PL    0/1:24,22:46:99:643,0,729
12    97136218    rs7978894    T    C    266.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.582;DB;DP=25;Dels=0.0;FS=7.463;HRun=1;HaplotypeScore=1.9946;MQ=59.07;MQ0=0;MQRankSum=-0.139;QD=10.65;ReadPosRankSum=-0.971;SNPEFF_AMINO_ACID_CHANGE=V2358A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_97136217_97136364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524981    GT:AD:DP:GQ:PL    0/1:15,10:25:99:296,0,470
12    97136239    rs1990828    G    A    880.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=S2365N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_97136217_97136364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524981    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:913,66,0
12    97147503    rs1420649    G    C    864.84    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=4.062;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.902;QD=15.17;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    0/1:28,29:57:99:895,0,775
12    97147854    rs992091    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    97158772    rs76974129    C    CT    372.02    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.672;DB;DP=27;FS=3.188;HRun=6;HaplotypeScore=56.0584;IndelType=I;MQ=60.4;MQ0=0;MQRankSum=0.462;QD=13.78;ReadPosRankSum=-0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C12orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342887    GT:AD:DP:GQ:PL    0/1:14,13:27:99:411,0,291
12    97303522    rs11108735    A    G    155.71    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.379;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.433;QD=5.56;ReadPosRankSum=-1.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266742    GT:AD:DP:GQ:PL    0/1:21,7:28:99:186,0,648
12    97303682    rs34499067    TA    T    125.53    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=1.508;DB;DP=34;FS=0.0;HRun=12;HaplotypeScore=147.1377;IndelType=D;MQ=58.59;MQ0=0;MQRankSum=-0.339;QD=3.69;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266742    GT:AD:DP:GQ:PL    0/1:22,12:34:99:165,0,276
12    97311376    rs34953416    CT    C    419.36    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DB;DP=99;FS=1.549;HRun=16;HaplotypeScore=574.5203;IndelType=D;MQ=56.99;MQ0=0;MQRankSum=2.707;QD=4.24;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266742    GT:AD:DP:GQ:PL    0/1:49,41:99:99:458,0,613
12    97311541    rs4762339    T    C    1451.30    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.282;DB;DP=94;Dels=0.0;FS=2.5;HRun=0;HaplotypeScore=0.734;MQ=58.78;MQ0=0;MQRankSum=-0.577;QD=15.28;ReadPosRankSum=0.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557092    GT:AD:DP:GQ:PL    0/1:43,51:94:99:1481,0,1444
12    97314001    rs11830756    A    G    67.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=5.19;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554226    GT:AD:DP:GQ:PL    0/1:7,6:13:97.42:97,0,254
12    97328714    rs1610921    TGCTTATAA    T    855.79    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=4.256;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=203.007;IndelType=D;MQ=52.2;MQ0=0;MQRankSum=-2.751;QD=31.7;ReadPosRankSum=-1.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266742    GT:AD:DP:GQ:PL    0/1:15,12:27:99:895,0,1930
12    97331219    rs112553043    GT    G    392.95    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=31;FS=0.0;HRun=10;HaplotypeScore=99.7083;IndelType=D;MQ=59.94;MQ0=0;MQRankSum=-0.847;QD=12.68;ReadPosRankSum=1.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553609    GT:AD:DP:GQ:PL    0/1:14,17:31:99:432,0,312
12    97337610    rs249580    C    T    81.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9497;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=16.33;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266742    GT:AD:DP:GQ:PL    0/1:2,3:5:30.19:112,0,30
12    97338696    rs249585    G    A    201.25    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=20.12;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266742    GT:AD:DP:GQ:PL    0/1:2,8:10:43.81:231,0,44
12    97339388    rs249589    G    C    449.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266742    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:482,36,0
12    97639049    rs1012314    T    C    616.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:650,48,0
12    97639144    rs1012315    A    G    1187.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1221,90,0
12    98921533    rs7136406    G    T    121.98    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.5;MQ0=0;MQRankSum=-1.681;QD=7.18;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261210    GT:AD:DP:GQ:PL    0/1:11,6:17:99:152,0,364
12    98921574    rs11109517    G    T    579.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.237;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.849;MQ=59.48;MQ0=0;MQRankSum=-1.503;QD=16.09;ReadPosRankSum=-1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261210    GT:AD:DP:GQ:PL    0/1:18,18:36:99:609,0,607
12    98925362    rs17028432    G    C    106.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;MQRankSum=0.336;QD=9.7;ReadPosRankSum=-0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548911    GT:AD:DP:GQ:PL    0/1:6,5:11:99:137,0,171
12    98925650    rs3213901    G    T    241.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.098;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.263;QD=15.07;ReadPosRankSum=0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546828    GT:AD:DP:GQ:PL    0/1:8,8:16:99:271,0,293
12    98941223    rs10860342    A    G    146.04    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=16.23;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343315    GT:AD:DP:GQ:PL    0/1:4,5:9:99:176,0,127
12    99020688    rs79205103    TGACA    T    394.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=36.0803;IndelType=D;MQ=58.24;MQ0=0;QD=56.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKBIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299157    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:436,21,0
12    99056125    rs10745833    T    A    70.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=55.92;MQ0=0;QD=10.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333991    GT:AD:DP:GQ:PL    1/1:0,7:7:9.03:102,9,0
12    99097470    rs2288720    G    A    160.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333991    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
12    99116919    rs11109582    A    G    1253.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333991    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1286,96,0
12    99129497    rs10860361    G    A    851.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333991    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:885,69,0
12    99129541    rs7300187    G    T    293.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333991    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:327,24,0
12    99166805    rs2287574    G    T    608.91    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.787;DB;DP=77;Dels=0.0;FS=5.127;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.281;QD=7.91;ReadPosRankSum=0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:50,27:77:99:639,0,1596
12    99175091    rs138904067    AAC    A    368.34    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=2.952;DB;DP=36;FS=1.792;HRun=0;HaplotypeScore=149.0734;IndelType=D;MQ=59.62;MQ0=0;MQRankSum=0.415;QD=10.23;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:22,13:36:99:407,0,427
12    99175840    rs7954506    A    G    74.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=8.32;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:5,4:9:99:105,0,146
12    99189195    rs7315399    T    G    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549797    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
12    99447139    rs3794799    C    A    432.98    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.601;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=1.561;QD=13.97;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:16,15:31:99:463,0,556
12    99478626    rs3803094    C    T    386.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=32;Dels=0.0;FS=2.235;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.403;QD=12.08;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:16,16:32:99:416,0,488
12    99478889    rs7970088    G    A    572.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:605,45,0
12    99638276    rs2712643    C    A    139.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=13.98;ReadPosRankSum=1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546631    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,180
12    99639930    rs923724    G    C    622.56    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.994;DB;DP=46;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.8321;MQ=58.48;MQ0=0;MQRankSum=0.742;QD=13.53;ReadPosRankSum=-0.605;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546631    GT:AD:DP:GQ:PL    0/1:25,21:46:99:653,0,830
12    99639944    rs35408837    CT    C    360.19    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=5.466;DB;DP=55;FS=3.59;HRun=10;HaplotypeScore=211.3067;IndelType=D;MQ=58.73;MQ0=0;MQRankSum=0.665;QD=6.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546631    GT:AD:DP:GQ:PL    0/1:33,22:55:99:399,0,745
12    99640557    rs1552759    T    C    3452.09    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.847;DB;DP=235;Dels=0.0;FS=1.028;HRun=1;HaplotypeScore=3.111;MQ=59.8;MQ0=0;MQRankSum=-1.476;QD=14.69;ReadPosRankSum=-1.498;SNPEFF_AMINO_ACID_CHANGE=P193;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_99640053_99640642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538702    GT:AD:DP:GQ:PL    0/1:115,119:235:99:3452,0,3403
12    100041852    rs11109967    G    A    80.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=8.02;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:6,4:10:99:110,0,201
12    100166935    rs11110032    A    G    852.88    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=57;Dels=0.0;FS=6.255;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=14.96;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:29,28:57:99:883,0,959
12    100169519    rs10778023    A    G    445.63    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=2.182;QD=14.85;ReadPosRankSum=-1.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:14,16:30:99:476,0,491
12    100173822    rs116442602    C    G    1108.04    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=67;Dels=0.0;FS=2.124;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.5;QD=16.54;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    0/1:34,33:67:99:1138,0,1140
12    100219207    rs7138513    A    G    702.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANKS1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329257    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:736,54,0
12    100452027    rs60592197    T    C    1576.34    PASS    AB=0.402;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.229;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.2;MQ0=0;MQRankSum=-0.697;QD=18.12;ReadPosRankSum=-0.325;SNPEFF_AMINO_ACID_CHANGE=I1010V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_100451807_100453311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279907    GT:AD:DP:GQ:PL    0/1:35,52:87:99:1606,0,1085
12    100478156    rs59176559    TCA    T    203.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.791;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=139.6245;IndelType=D;MQ=48.43;MQ0=0;MQRankSum=-0.474;QD=9.24;ReadPosRankSum=1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551980    GT:AD:DP:GQ:PL    1/1:10,7:22:21.37:245,21,0
12    100480141    rs71981405    G    GA    78.08    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=77.5519;IndelType=I;MQ=57.91;MQ0=0;MQRankSum=0.529;QD=5.21;ReadPosRankSum=-1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1BP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279907    GT:AD:DP:GQ:PL    0/1:9,6:15:99:117,0,142
12    100550996    rs12370675    G    A    556.82    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.216;DB;DP=56;Dels=0.0;FS=4.51;HRun=0;HaplotypeScore=0.0;MQ=59.98;MQ0=0;MQRankSum=-0.592;QD=9.94;ReadPosRankSum=-0.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC010203.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408843    GT:AD:DP:GQ:PL    0/1:35,21:56:99:587,0,968
12    100583567    rs12146864    G    A    35.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.77;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-175P13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548404    GT:AD:DP:GQ:PL    0/1:2,2:4:65.07:65,0,69
12    100604221    rs7970382    T    G    339.48    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=20;Dels=0.0;FS=3.468;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.836;QD=16.97;ReadPosRankSum=-0.836;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547458    GT:AD:DP:GQ:PL    0/1:9,11:20:99:369,0,301
12    100636485    rs7958895    T    C    33.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553038    GT:AD:DP:GQ:PL    0/1:3,2:5:63.53:64,0,112
12    100646134    rs66721214    CA    C    1550.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=9;HaplotypeScore=164.7135;IndelType=D;MQ=60.52;MQ0=0;QD=25.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEPDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299185    GT:AD:DP:GQ:PL    1/1:3,59:62:99:1593,174,0
12    100657464    rs7307415    T    C    1207.75    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.851;DB;DP=77;Dels=0.0;FS=1.886;HRun=0;HaplotypeScore=1.8938;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=15.69;ReadPosRankSum=0.902;SNPEFF_AMINO_ACID_CHANGE=H115R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_100657275_100657671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DEPDC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000551642    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1238,0,1235
12    100704733    rs73147818    G    C    334.66    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.176;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-0.317;QD=14.55;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258506    GT:AD:DP:GQ:PL    0/1:11,12:23:99:365,0,329
12    100708367    rs33968174    C    T    845.75    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.616;DB;DP=67;Dels=0.0;FS=0.978;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.129;QD=12.62;ReadPosRankSum=-0.718;SNPEFF_AMINO_ACID_CHANGE=P184L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_100708267_100708392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCYL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258506    GT:AD:DP:GQ:PL    0/1:34,33:67:99:876,0,1103
12    100787095    rs1998925    T    C    3323.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323346    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3324,247,0
12    100795699    rs11568544    A    G    1437.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323346    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1470,105,0
12    100795794    rs11110366    A    G    278.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323346    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:311,24,0
12    100806503    rs11568536    C    T    1125.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323346    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1159,84,0
12    100811727    rs11110371    C    T    830.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323346    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:863,66,0
12    100813487    rs7967828    A    G    278.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323346    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:311,27,0
12    100813745    rs141294063    C    T    301.97    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=23;Dels=0.0;FS=1.643;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.899;QD=13.13;ReadPosRankSum=-0.961;SNPEFF_AMINO_ACID_CHANGE=D476;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_100813593_100814030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392989    GT:AD:DP:GQ:PL    0/1:13,10:23:99:332,0,397
12    100813976    rs11568537    A    C    296.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552697    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:330,27,0
12    100988773    rs35690    T    A    150.88    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.86;ReadPosRankSum=-1.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547739    GT:AD:DP:GQ:PL    0/1:2,6:8:45.86:181,0,46
12    101017445    rs1469385    T    C    1441.92    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.008;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9978;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=22.89;ReadPosRankSum=-0.707;SNPEFF_AMINO_ACID_CHANGE=L184;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_101017340_101018683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537247    GT:AD:DP:GQ:PL    0/1:15,48:63:99:1472,0,431
12    101018014    rs1045602    T    C    850.94    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.155;DB;DP=63;Dels=0.0;FS=1.06;HRun=1;HaplotypeScore=1.9731;MQ=60.0;MQ0=0;MQRankSum=-1.335;QD=13.51;ReadPosRankSum=-1.556;SNPEFF_AMINO_ACID_CHANGE=N373;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_101017340_101018683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537247    GT:AD:DP:GQ:PL    0/1:35,28:63:99:881,0,1211
12    101315859    .    C    T    127.07    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.484;DP=26;Dels=0.0;FS=0.0;HRun=13;HaplotypeScore=0.0;MQ=57.29;MQ0=0;MQRankSum=0.429;QD=4.89;ReadPosRankSum=2.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    0/1:12,14:26:99:157,0,260
12    101433990    rs665071    A    G    742.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:776,60,0
12    101473109    rs34514121    AC    A    251.88    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.603;DB;DP=23;FS=3.882;HRun=9;HaplotypeScore=59.0734;IndelType=D;MQ=58.99;MQ0=0;MQRankSum=0.0;QD=10.95;ReadPosRankSum=-0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    0/1:10,13:23:99:291,0,246
12    101491375    rs1842888    G    A    140.60    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=10.04;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    0/1:9,5:14:99:171,0,260
12    101491517    rs76554907    G    A    863.39    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=0.742;QD=16.29;ReadPosRankSum=0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    0/1:24,29:53:99:893,0,733
12    101505216    rs638615    A    C    293.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
12    101510371    rs349661    T    G    1569.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1602,120,0
12    101510696    rs349662    G    A    295.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
12    101520648    rs3832861    C    CTG    427.17    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=3.372;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=124.616;IndelType=I;MQ=60.65;MQ0=0;MQRankSum=0.635;QD=12.94;ReadPosRankSum=-0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    0/1:23,10:33:99:466,0,807
12    101520689    rs1055734    A    G    405.77    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.868;DB;DP=44;Dels=0.0;FS=1.268;HRun=0;HaplotypeScore=0.734;MQ=60.25;MQ0=0;MQRankSum=1.194;QD=9.22;ReadPosRankSum=0.012;SNPEFF_AMINO_ACID_CHANGE=S423;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_101520657_101520852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    0/1:26,18:44:99:436,0,808
12    101520875    rs3741954    G    A    283.51    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.674;QD=14.18;ReadPosRankSum=-0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ANO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299222    GT:AD:DP:GQ:PL    0/1:11,9:20:99:314,0,353
12    101551996    rs117158575    C    T    680.43    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.233;DB;DP=77;Dels=0.0;FS=5.361;HRun=3;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.187;QD=8.84;ReadPosRankSum=-1.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536262    GT:AD:DP:GQ:PL    0/1:50,27:77:99:710,0,1685
12    101552075    rs2671444    G    A    1032.83    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.94;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.75;MQ0=0;MQRankSum=-1.132;QD=11.35;ReadPosRankSum=-1.017;SNPEFF_AMINO_ACID_CHANGE=Y554;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_101552027_101552106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536262    GT:AD:DP:GQ:PL    0/1:55,36:91:99:1063,0,1851
12    101683015    rs703714    C    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261637    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    101683929    rs703715    C    T    627.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_AMINO_ACID_CHANGE=N204;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_101683915_101684052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261637    GT:AD:DP:GQ:PL    1/1:0,16:17:48.16:660,48,0
12    101685422    rs844030    G    A    433.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551825    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:466,36,0
12    101750814    rs10082778    T    A    1296.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=L1882Q;SNPEFF_CODON_CHANGE=cTa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_101750704_101750860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261637    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1330,99,0
12    101777489    rs10860719    G    A    620.14    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.219;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.571;QD=14.42;ReadPosRankSum=-0.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261637    GT:AD:DP:GQ:PL    0/1:22,21:43:99:650,0,744
12    101779229    rs10745913    G    T    153.68    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=10.98;ReadPosRankSum=0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261637    GT:AD:DP:GQ:PL    0/1:8,6:14:99:184,0,281
12    101779964    rs4764794    T    C    1482.04    PASS    AB=0.454;AC=1;AF=0.50;AN=2;BaseQRankSum=3.157;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8325;MQ=58.52;MQ0=0;MQRankSum=-1.57;QD=13.47;ReadPosRankSum=-2.075;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261637    GT:AD:DP:GQ:PL    0/1:49,59:110:99:1512,0,1203
12    101795009    rs17500203    A    C    785.12    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=68;Dels=0.0;FS=2.614;HRun=1;HaplotypeScore=1.9722;MQ=59.66;MQ0=0;MQRankSum=1.776;QD=11.55;ReadPosRankSum=0.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548070    GT:AD:DP:GQ:PL    0/1:36,32:68:99:815,0,1158
12    101870804    rs7979430    G    A    417.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299272    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:450,33,0
12    102023391    .    CT    C    84.35    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DP=11;FS=0.0;HRun=1;HaplotypeScore=133.7057;IndelType=D;MQ=50.96;MQ0=0;MQRankSum=-1.932;QD=7.67;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547627    GT:AD:DP:GQ:PL    0/1:6,5:11:99:123,0,255
12    102036305    rs2293468    C    T    316.47    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=18;Dels=0.0;FS=4.868;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=17.58;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=D134;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_102036197_102036363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551300    GT:AD:DP:GQ:PL    0/1:7,11:18:99:346,0,208
12    102040418    rs77650305    A    G    139.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=17.42;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550514    GT:AD:DP:GQ:PL    0/1:2,6:8:53.01:169,0,53
12    102041757    rs17031746    A    G    276.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360610    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:309,24,0
12    102041967    rs35908539    C    CA    284.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=7;HaplotypeScore=21.5091;IndelType=I;MQ=60.0;MQ0=0;QD=28.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360610    GT:AD:DP:GQ:PL    1/1:1,9:10:27.08:326,27,0
12    102044912    rs825046    C    T    755.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360610    GT:AD:DP:GQ:PL    1/1:0,20:20:60.15:788,60,0
12    102045163    rs3817552    C    G    1727.14    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=1.224;DB;DP=119;Dels=0.0;FS=2.571;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.987;QD=14.51;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=H382Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_102045009_102045171;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000551300    GT:AD:DP:GQ:PL    0/1:60,59:119:99:1757,0,1842
12    102046595    rs1997204    T    C    1452.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360610    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1485,120,0
12    102060670    rs72150172    CAT    C    228.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=126.8171;IndelType=D;MQ=58.97;MQ0=0;MQRankSum=0.077;QD=16.35;ReadPosRankSum=-1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360610    GT:AD:DP:GQ:PL    0/1:7,7:14:72.64:268,0,73
12    102064118    rs7139095    T    C    4684.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.0721;MQ=58.97;MQ0=0;QD=31.44;SNPEFF_AMINO_ACID_CHANGE=I724;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_102064099_102064187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551300    GT:AD:DP:GQ:PL    1/1:0,149:149:99:4684,367,0
12    102069264    rs1263786    G    C    205.92    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.429;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=9.81;ReadPosRankSum=0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548298    GT:AD:DP:GQ:PL    0/1:11,10:21:99:236,0,364
12    102069418    rs1405710    C    T    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548298    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
12    102071290    rs1263784    T    G    110.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=15.76;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548298    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,108
12    102071719    rs1263783    G    A    127.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548298    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
12    102074442    rs2303631    A    G    69.72    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=7.75;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360610    GT:AD:DP:GQ:PL    0/1:5,4:9:99:100,0,182
12    102076479    rs35621105    C    T    201.16    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DB;DP=17;Dels=0.0;FS=6.726;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=11.83;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360610    GT:AD:DP:GQ:PL    0/1:9,8:17:99:231,0,280
12    102078094    rs2303629    G    C    809.87    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.782;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.829;QD=18.0;ReadPosRankSum=0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360610    GT:AD:DP:GQ:PL    0/1:19,26:45:99:840,0,606
12    102108264    rs117690885    A    T    250    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.25;DB;DP=25;Dels=0.0;FS=2.114;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.638;QD=10.0;ReadPosRankSum=-0.804;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546490    GT:AD:DP:GQ:PL    0/1:15,10:25:99:280,0,468
12    102119978    rs17780078    G    A    220.26    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=18.35;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SYCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266743    GT:AD:DP:GQ:PL    0/1:5,7:12:99:250,0,173
12    102131090    rs72124000    TA    T    62.70    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.564;DB;DP=66;FS=4.63;HRun=17;HaplotypeScore=413.0546;IndelType=D;MQ=54.68;MQ0=0;MQRankSum=0.769;QD=0.95;ReadPosRankSum=-1.59;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHPT1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:40,18:66:99:102,0,168
12    102182272    .    A    T    630.05    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.993;DP=32;Dels=0.0;FS=1.859;HRun=0;HaplotypeScore=1.9148;MQ=60.0;MQ0=0;MQRankSum=-2.261;QD=19.69;ReadPosRankSum=0.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPTAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299314    GT:AD:DP:GQ:PL    0/1:10,22:32:99:660,0,294
12    102184071    rs222512    C    T    116.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPTAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299314    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
12    102301892    rs10219618    G    A    316.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.038;QD=15.83;ReadPosRankSum=1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258534    GT:AD:DP:GQ:PL    0/1:10,10:20:99:346,0,304
12    102308095    rs7955730    C    T    106.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.361;QD=11.82;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258534    GT:AD:DP:GQ:PL    0/1:4,5:9:99:136,0,115
12    102433811    rs4237982    T    C    2719.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326351    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2752,232,0
12    102439718    rs73183994    C    T    32.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.7;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240079    GT:AD:DP:GQ:PL    0/1:5,2:7:62.92:63,0,187
12    102468751    rs145843606    C    T    188.44    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.25;MQ0=0;MQRankSum=0.953;QD=9.92;ReadPosRankSum=0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUP37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543021    GT:AD:DP:GQ:PL    0/1:10,9:19:99:218,0,232
12    102494849    rs17438178    T    C    417.40    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.933;QD=13.46;ReadPosRankSum=-1.143;SNPEFF_AMINO_ACID_CHANGE=R105;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_102494810_102494882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NUP37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251074    GT:AD:DP:GQ:PL    0/1:14,17:31:99:447,0,432
12    102796522    rs1520220    G    C    132.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337514    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
12    102872155    rs67214112    C    CT    83.18    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=39.3769;IndelType=I;MQ=60.9;MQ0=0;MQRankSum=-0.244;QD=6.93;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307046    GT:AD:DP:GQ:PL    0/1:7,5:12:99:122,0,136
12    103234479    rs798709    A    G    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549247    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
12    103237468    rs772897    G    C    1541.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_AMINO_ACID_CHANGE=L380;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_103237424_103237557;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307000    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1575,117,0
12    103240630    rs1522306    C    A    1236.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307000    GT:AD:DP:GQ:PL    1/1:0,34:34:93.31:1270,93,0
12    103245802    rs1722383    A    G    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549111    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
12    103248924    rs1126758    C    T    1424.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=Q227;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_103248914_103249110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307000    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1457,105,0
12    103249164    rs2251905    C    T    712.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307000    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:745,54,0
12    103260608    rs2247836    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307000    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
12    103260634    rs2133298    T    C    81.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307000    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
12    103271193    rs1718301    G    A    1410.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.58;MQ0=0;QD=32.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551337    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1443,111,0
12    103298587    rs185113258    G    A    530.48    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=33;Dels=0.0;FS=3.153;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.336;QD=16.08;ReadPosRankSum=1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307000    GT:AD:DP:GQ:PL    0/1:16,17:33:99:560,0,497
12    103352649    rs731682    C    G    506.74    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DB;DP=37;Dels=0.0;FS=3.092;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=13.7;ReadPosRankSum=0.646;SNPEFF_AMINO_ACID_CHANGE=V209;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_103351464_103352780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266744    GT:AD:DP:GQ:PL    0/1:16,21:37:99:537,0,455
12    103670917    rs12311525    A    G    318.59    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=9.65;ReadPosRankSum=0.168;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315192    GT:AD:DP:GQ:PL    0/1:21,12:33:99:349,0,644
12    103699685    rs7488867    C    T    2183.20    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.721;DB;DP=132;Dels=0.0;FS=5.085;HRun=1;HaplotypeScore=1.5115;MQ=59.51;MQ0=0;MQRankSum=1.293;QD=16.54;ReadPosRankSum=1.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548789    GT:AD:DP:GQ:PL    0/1:62,70:132:99:2213,0,2016
12    103872172    rs10778257    T    G    865.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.035;DB;DP=80;Dels=0.0;FS=1.92;HRun=0;HaplotypeScore=0.5784;MQ=59.13;MQ0=0;MQRankSum=0.282;QD=10.82;ReadPosRankSum=-0.371;SNPEFF_AMINO_ACID_CHANGE=E11D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_103872127_103872225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315192    GT:AD:DP:GQ:PL    0/1:45,35:80:99:896,0,1448
12    103872281    rs12306102    T    A    699.54    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.685;DB;DP=36;Dels=0.0;FS=4.523;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.018;QD=19.43;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315192    GT:AD:DP:GQ:PL    0/1:14,22:36:99:730,0,371
12    103872384    rs7138708    G    T    33.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=11.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C12orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315192    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:65,6,0
12    103988117    rs703596    C    A    2849.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.414;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9982;MQ=59.2;MQ0=0;MQRankSum=0.378;QD=32.75;ReadPosRankSum=1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:1,86:87:99:2882,177,0
12    103988311    rs703597    T    C    2658.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.559;DB;DP=89;Dels=0.0;FS=3.276;HRun=1;HaplotypeScore=1.4105;MQ=59.53;MQ0=0;MQRankSum=-0.186;QD=29.88;ReadPosRankSum=-0.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:2,87:89:99:2692,175,0
12    104015999    rs703612    T    C    312.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:345,27,0
12    104025219    rs112161070    T    TAA    377.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=13;HaplotypeScore=154.4223;IndelType=I;MQ=52.23;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:5,6:16:37.58:420,38,0
12    104042736    rs697199    T    C    299.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:0,10:10:30.04:333,30,0
12    104048592    rs831425    C    T    489.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:0,19:19:42.09:523,42,0
12    104100617    rs697212    C    T    619.51    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.253;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.33;QD=17.21;ReadPosRankSum=0.657;SNPEFF_AMINO_ACID_CHANGE=C1348;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104100570_104100765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388887    GT:AD:DP:GQ:PL    0/1:15,21:36:99:650,0,407
12    104111687    rs703653    C    A    1435.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1469,108,0
12    104124061    rs4981042    A    G    731.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.434;DB;DP=49;Dels=0.0;FS=9.702;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.291;QD=14.92;ReadPosRankSum=-1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:21,28:49:99:761,0,737
12    104129375    rs35300461    A    G    125.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=12.57;ReadPosRankSum=-1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:5,5:10:99:156,0,144
12    104131381    .    TCTC    T    466.69    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=1.744;DP=26;FS=0.0;HRun=0;HaplotypeScore=278.8786;IndelType=D;MQ=39.8;MQ0=0;MQRankSum=-2.154;QD=17.95;ReadPosRankSum=-1.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:19,7:26:99:506,0,551
12    104131402    .    TC    T    166.70    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=3.666;DP=26;FS=15.798;HRun=1;HaplotypeScore=283.1882;IndelType=D;MQ=43.61;MQ0=0;MQRankSum=-1.762;QD=6.41;ReadPosRankSum=-1.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:15,10:26:99:206,0,144
12    104131609    rs2271640    G    T    530.46    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.216;DB;DP=28;Dels=0.0;FS=2.208;HRun=0;HaplotypeScore=0.0;MQ=55.74;MQ0=0;MQRankSum=-1.127;QD=18.95;ReadPosRankSum=-0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:10,18:28:99:560,0,284
12    104136289    rs35102665    G    A    1291.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.414;DB;DP=75;Dels=0.0;FS=4.713;HRun=0;HaplotypeScore=0.7887;MQ=59.07;MQ0=0;MQRankSum=-1.063;QD=17.23;ReadPosRankSum=-0.498;SNPEFF_AMINO_ACID_CHANGE=A1996;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104136183_104136332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388887    GT:AD:DP:GQ:PL    0/1:30,45:75:99:1322,0,738
12    104136316    rs2292688    C    T    1062.69    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=64;Dels=0.0;FS=2.218;HRun=2;HaplotypeScore=0.0;MQ=58.91;MQ0=0;MQRankSum=0.59;QD=16.6;ReadPosRankSum=-0.576;SNPEFF_AMINO_ACID_CHANGE=F2005;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104136183_104136332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388887    GT:AD:DP:GQ:PL    0/1:28,36:64:99:1093,0,721
12    104138918    rs2292687    C    T    121.26    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.135;QD=10.11;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:7,5:12:99:151,0,183
12    104139034    rs7306642    C    A    264.48    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.539;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;MQRankSum=-0.099;QD=12.02;ReadPosRankSum=1.022;SNPEFF_AMINO_ACID_CHANGE=P2039T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104138951_104139055;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388887    GT:AD:DP:GQ:PL    0/1:12,10:22:99:294,0,390
12    104140517    rs2056128    A    G    1774.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1808,132,0
12    104146813    rs34738204    A    T    37.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:3,2:5:67.83:68,0,107
12    104146964    rs35756765    C    A    199.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.154;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=14.22;ReadPosRankSum=0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:7,7:14:99:229,0,212
12    104147171    rs3751200    G    A    323.40    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.128;DB;DP=26;Dels=0.0;FS=4.222;HRun=0;HaplotypeScore=1.81;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=12.44;ReadPosRankSum=-1.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:13,12:26:99:353,0,422
12    104147178    rs3751199    C    A    328.46    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.115;DB;DP=20;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.42;ReadPosRankSum=2.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:9,11:20:99:358,0,240
12    104149022    rs11111748    G    A    2258.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2291,169,0
12    104149251    rs7296626    C    T    1503.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1537,111,0
12    104151931    rs12425537    T    C    199.42    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.337;DB;DP=17;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.241;QD=11.73;ReadPosRankSum=-0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258495    GT:AD:DP:GQ:PL    0/1:9,8:17:99:229,0,324
12    104155075    rs55724382    T    C    245.19    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=39;Dels=0.0;FS=1.659;HRun=3;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=0.167;QD=6.29;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548073    GT:AD:DP:GQ:PL    0/1:27,12:39:99:275,0,992
12    104157234    rs1057892    G    C    1478.73    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.296;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.65;MQ0=0;MQRankSum=1.458;QD=11.29;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548579    GT:AD:DP:GQ:PL    0/1:77,54:131:99:1509,0,2324
12    104157502    rs3751196    G    A    508.08    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.34;MQ0=0;MQRankSum=0.397;QD=14.52;ReadPosRankSum=0.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548579    GT:AD:DP:GQ:PL    0/1:18,17:35:99:538,0,626
12    104171742    rs17034524    C    T    388.64    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.632;DB;DP=37;Dels=0.0;FS=5.334;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.836;QD=10.5;ReadPosRankSum=0.7;SNPEFF_AMINO_ACID_CHANGE=L504;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104166088_104171859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392876    GT:AD:DP:GQ:PL    0/1:23,14:37:99:419,0,695
12    104171948    rs57944247    T    A    35.75    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=12;HaplotypeScore=2.8995;MQ=56.35;MQ0=0;MQRankSum=-0.312;QD=2.75;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392876    GT:AD:DP:GQ:PL    0/1:7,6:13:65.74:66,0,172
12    104182458    rs2888792    T    C    317.50    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.128;QD=12.21;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392876    GT:AD:DP:GQ:PL    0/1:15,11:26:99:347,0,536
12    104182836    rs9739384    T    C    120.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.05;MQ0=0;MQRankSum=-0.38;QD=10.07;ReadPosRankSum=2.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392876    GT:AD:DP:GQ:PL    0/1:7,5:12:99:151,0,191
12    104182857    rs4964820    G    A    133.04    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=16.63;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392876    GT:AD:DP:GQ:PL    0/1:3,5:8:86.85:163,0,87
12    104186795    rs1866294    A    G    76.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.638;QD=9.6;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465502    GT:AD:DP:GQ:PL    0/1:4,4:8:99:107,0,135
12    104186995    rs61748068    G    A    2238.40    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=2.422;DB;DP=153;Dels=0.0;FS=1.292;HRun=2;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=-0.795;QD=14.63;ReadPosRankSum=-0.813;SNPEFF_AMINO_ACID_CHANGE=F322;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104186942_104187043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392876    GT:AD:DP:GQ:PL    0/1:69,84:153:99:2268,0,2071
12    104187092    rs1866296    G    A    1617.82    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=93;Dels=0.0;FS=4.477;HRun=0;HaplotypeScore=1.6483;MQ=60.0;MQ0=0;MQRankSum=-0.393;QD=17.4;ReadPosRankSum=-1.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465502    GT:AD:DP:GQ:PL    0/1:39,54:93:99:1648,0,1294
12    104187440    rs11111781    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465502    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:74,0,29
12    104190523    rs12425205    G    A    242.38    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=1.708;QD=22.03;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465502    GT:AD:DP:GQ:PL    0/1:3,8:11:76.03:272,0,76
12    104190869    rs17034593    C    T    495.66    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.307;DB;DP=30;Dels=0.0;FS=8.039;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.52;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392876    GT:AD:DP:GQ:PL    0/1:14,16:30:99:526,0,375
12    104208868    rs10861107    C    T    468.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=15.63;ReadPosRankSum=0.498;SNPEFF_AMINO_ACID_CHANGE=L80;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104208715_104208899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NT5DC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392876    GT:AD:DP:GQ:PL    0/1:15,15:30:99:499,0,483
12    104254753    rs11111816    G    A    32.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=5.46;ReadPosRankSum=0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-642P15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548527    GT:AD:DP:GQ:PL    0/1:3,3:6:62.75:63,0,98
12    104254932    rs11111817    G    A    962.21    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=70;Dels=0.0;FS=3.759;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.937;QD=13.75;ReadPosRankSum=0.336;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-642P15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548527    GT:AD:DP:GQ:PL    0/1:38,32:70:99:992,0,1069
12    104260208    rs11612613    C    T    432.71    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.511;DB;DP=38;Dels=0.0;FS=7.848;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.129;QD=11.39;ReadPosRankSum=-0.294;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-642P15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548527    GT:AD:DP:GQ:PL    0/1:22,16:38:99:463,0,689
12    104309383    rs9788014    C    T    741.04    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=54;Dels=0.0;FS=5.483;HRun=0;HaplotypeScore=0.9578;MQ=59.57;MQ0=0;MQRankSum=-0.382;QD=13.72;ReadPosRankSum=1.648;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-642P15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388789    GT:AD:DP:GQ:PL    0/1:29,25:54:99:771,0,912
12    104309712    rs2583273    C    T    3056.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.47;MQ0=0;QD=35.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-642P15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388789    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3090,238,0
12    104324148    rs2722187    G    A    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    104325871    rs1183212    T    C    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299767    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    104325924    rs1165682    T    A    124.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299767    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
12    104326862    rs117886928    T    C    50.53    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.32;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548622    GT:AD:DP:GQ:PL    0/1:5,3:8:80.52:81,0,185
12    104326991    rs1920413    A    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548622    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    104327979    rs6615    C    T    590.98    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=55;Dels=0.0;FS=8.302;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=10.75;ReadPosRankSum=0.846;SNPEFF_AMINO_ACID_CHANGE=T219;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104327734_104328065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299767    GT:AD:DP:GQ:PL    0/1:34,21:55:99:621,0,1036
12    104335750    rs34299155    TAA    T    700.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=4;HaplotypeScore=63.0844;IndelType=D;MQ=61.26;MQ0=0;QD=41.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550479    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:742,51,0
12    104337222    rs3842649    GTAAT    G    428.70    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=75.5125;IndelType=D;MQ=54.69;MQ0=0;MQRankSum=-0.766;QD=26.79;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550479    GT:AD:DP:GQ:PL    0/1:7,9:16:99:468,0,433
12    104337667    rs1882019    G    A    707.40    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.416;DB;DP=52;Dels=0.0;FS=12.91;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.196;QD=13.6;ReadPosRankSum=-0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550479    GT:AD:DP:GQ:PL    0/1:21,31:52:99:737,0,728
12    104341015    rs1165694    T    C    202.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.78;QD=14.48;ReadPosRankSum=0.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378090    GT:AD:DP:GQ:PL    0/1:7,7:14:99:233,0,250
12    104341103    rs7645    C    T    484.16    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=29;Dels=0.0;FS=1.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.24;QD=16.7;ReadPosRankSum=1.418;SNPEFF_AMINO_ACID_CHANGE=P509;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104341089_104341208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421266    GT:AD:DP:GQ:PL    0/1:14,15:29:99:514,0,418
12    104341187    rs5800607    TGAA    T    646.30    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=5.297;DB;DP=62;FS=0.0;HRun=0;HaplotypeScore=259.0604;IndelType=D;MQ=58.62;MQ0=0;MQRankSum=-0.024;QD=10.42;ReadPosRankSum=1.419;SNPEFF_AMINO_ACID_CHANGE=E538-;SNPEFF_CODON_CHANGE=gaa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_12_104341089_104341208;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421266    GT:AD:DP:GQ:PL    0/1:43,19:62:99:685,0,2351
12    104341398    rs1165695    T    A    566    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=58;Dels=0.0;FS=1.12;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.303;QD=9.76;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378090    GT:AD:DP:GQ:PL    0/1:35,23:58:99:596,0,1034
12    104345253    rs11111854    A    G    353.98    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.598;DB;DP=30;Dels=0.0;FS=4.738;HRun=1;HaplotypeScore=1.6648;MQ=60.0;MQ0=0;MQRankSum=-0.644;QD=11.8;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546540    GT:AD:DP:GQ:PL    0/1:16,14:30:99:384,0,519
12    104345412    rs3830654    C    CA    659.65    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.634;DB;DP=47;FS=13.401;HRun=8;HaplotypeScore=105.0699;IndelType=I;MQ=59.41;MQ0=0;MQRankSum=0.55;QD=14.04;ReadPosRankSum=-0.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C12orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546540    GT:AD:DP:GQ:PL    0/1:23,24:47:99:699,0,392
12    104370850    rs3829300    A    G    773.61    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=51;Dels=0.0;FS=1.12;HRun=0;HaplotypeScore=2.0899;MQ=57.27;MQ0=0;MQRankSum=0.861;QD=14.88;ReadPosRankSum=0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266775    GT:AD:DP:GQ:PL    0/1:23,28:51:99:804,0,665
12    104373462    rs4135094    T    C    268.44    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=15.79;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266775    GT:AD:DP:GQ:PL    0/1:8,9:17:99:298,0,273
12    104373600    rs3751209    G    A    2677.56    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.999;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8062;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=16.53;ReadPosRankSum=1.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266775    GT:AD:DP:GQ:PL    0/1:70,92:162:99:2708,0,2075
12    104373728    .    G    GA    650.50    PASS    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.713;DP=141;FS=4.121;HRun=6;HaplotypeScore=339.5788;IndelType=I;MQ=57.27;MQ0=2;MQRankSum=-2.711;QD=4.55;ReadPosRankSum=1.736;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_104373609_104373850;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDG;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000266775    GT:AD:DP:GQ:PL    0/1:112,31:141:99:690,0,2779
12    104378826    rs4135122    C    T    231.60    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.067;QD=25.73;ReadPosRankSum=-0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360814    GT:AD:DP:GQ:PL    0/1:2,7:9:12.05:261,0,12
12    104378839    rs10549241    ATG    A    253.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=47.5948;IndelType=D;MQ=56.42;MQ0=0;QD=36.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360814    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:296,21,0
12    104380734    rs2888805    G    A    474.65    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=3.991;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=55.23;MQ0=1;MQRankSum=0.164;QD=9.49;ReadPosRankSum=0.951;SNPEFF_AMINO_ACID_CHANGE=V163M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104380726_104381022;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542036    GT:AD:DP:GQ:PL    0/1:34,16:50:99:505,0,862
12    104387138    rs79806135    G    A    75.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552572    GT:AD:DP:GQ:PL    0/1:4,3:7:84.84:106,0,85
12    104391041    rs2293626    C    T    42.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.17;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546851    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
12    104393304    rs147179935    AC    A    1210.92    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=7.088;DB;DP=92;FS=0.0;HRun=2;HaplotypeScore=218.8006;IndelType=D;MQ=60.5;MQ0=0;MQRankSum=0.687;QD=13.16;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360814    GT:AD:DP:GQ:PL    0/1:53,39:92:99:1250,0,1870
12    104413436    rs11553765    C    T    93.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.061;QD=6.21;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT8D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546851    GT:AD:DP:GQ:PL    0/1:10,5:15:99:123,0,353
12    104459811    rs34011860    A    G    80.70    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=5.76;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229330    GT:AD:DP:GQ:PL    0/1:10,4:14:99:111,0,342
12    104459905    rs35879815    T    G    399.59    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.983;DB;DP=49;Dels=0.0;FS=3.067;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.476;QD=8.15;ReadPosRankSum=-1.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229330    GT:AD:DP:GQ:PL    0/1:27,22:49:99:430,0,853
12    104460228    rs11111885    C    G    190.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=19.08;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229330    GT:AD:DP:GQ:PL    0/1:4,6:10:99:221,0,131
12    104461937    rs6539123    C    T    631.61    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.822;DB;DP=54;Dels=0.0;FS=4.855;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.889;QD=11.7;ReadPosRankSum=-0.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229330    GT:AD:DP:GQ:PL    0/1:32,22:54:99:662,0,967
12    104476255    rs78717299    G    C    712.36    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.479;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.191;QD=18.75;ReadPosRankSum=0.541;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550444    GT:AD:DP:GQ:PL    0/1:16,22:38:99:742,0,451
12    104489120    rs2272477    T    C    220.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=33;Dels=0.0;FS=2.681;HRun=2;HaplotypeScore=2.9137;MQ=58.77;MQ0=0;MQRankSum=0.99;QD=6.68;ReadPosRankSum=-0.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229330    GT:AD:DP:GQ:PL    0/1:22,11:33:99:251,0,669
12    104496724    rs35223676    C    T    318.96    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.586;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=-0.879;QD=10.63;ReadPosRankSum=0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCFC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229330    GT:AD:DP:GQ:PL    0/1:17,13:30:99:349,0,550
12    104516968    .    G    GA    131.87    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DP=19;FS=0.0;HRun=10;HaplotypeScore=99.8843;IndelType=I;MQ=56.25;MQ0=0;MQRankSum=-1.447;QD=6.94;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551446    GT:AD:DP:GQ:PL    0/1:11,8:19:99:171,0,145
12    104520054    rs12426862    T    C    281.69    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.85;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=10.43;ReadPosRankSum=0.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550881    GT:AD:DP:GQ:PL    0/1:16,11:27:99:312,0,592
12    104522080    rs10507174    G    A    171.89    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=13.22;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550881    GT:AD:DP:GQ:PL    0/1:7,6:13:99:202,0,215
12    104522120    rs10507175    G    A    223.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.231;QD=8.28;ReadPosRankSum=0.797;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFYB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550881    GT:AD:DP:GQ:PL    0/1:18,9:27:99:254,0,642
12    104645363    rs7960443    G    A    291.46    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=2.134;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.331;QD=9.4;ReadPosRankSum=-0.275;SNPEFF_AMINO_ACID_CHANGE=T50;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104645305_104645456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429002    GT:AD:DP:GQ:PL    0/1:21,10:31:99:321,0,659
12    104645405    rs7975161    T    C    324.50    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.681;DB;DP=33;Dels=0.0;FS=3.151;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.343;QD=9.83;ReadPosRankSum=-1.032;SNPEFF_AMINO_ACID_CHANGE=D64;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104645305_104645456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429002    GT:AD:DP:GQ:PL    0/1:20,13:33:99:354,0,560
12    104645669    rs6539132    C    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429002    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
12    104698582    rs11111987    A    G    729.13    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=0.576;DB;DP=67;Dels=0.0;FS=10.945;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.338;QD=10.88;ReadPosRankSum=0.96;SNPEFF_AMINO_ACID_CHANGE=Q290;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_104697517_104698980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EID3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527879    GT:AD:DP:GQ:PL    0/1:39,28:67:99:759,0,1222
12    104707151    rs5018287    A    G    180.72    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.405;DB;DP=15;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.637;QD=12.05;ReadPosRankSum=-0.984;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528079    GT:AD:DP:GQ:PL    0/1:8,7:15:99:211,0,287
12    104707180    rs6539137    A    T    41.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=3.74;ReadPosRankSum=-1.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528079    GT:AD:DP:GQ:PL    0/1:6,5:11:71.17:71,0,221
12    104709891    rs10861198    G    T    76.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526266    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:107,0,27
12    104714847    rs80130284    CT    C    33.16    QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.912;DB;DP=93;FS=3.437;HRun=14;HaplotypeScore=490.9251;IndelType=D;MQ=57.2;MQ0=0;MQRankSum=0.607;QD=0.36;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526580    GT:AD:DP:GQ:PL    0/1:74,14:93:72.19:72,0,1408
12    104721575    rs7962256    G    C    467.87    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.804;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=18.71;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529751    GT:AD:DP:GQ:PL    0/1:10,15:25:99:498,0,350
12    104733165    rs10861202    A    G    987.98    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=74;Dels=0.0;FS=1.955;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.163;QD=13.35;ReadPosRankSum=-0.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354940    GT:AD:DP:GQ:PL    0/1:36,38:74:99:1018,0,1145
12    104995800    rs5800627    A    AT    91.31    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=52.1349;IndelType=I;MQ=59.06;MQ0=0;MQRankSum=-0.177;QD=4.57;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHST11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303694    GT:AD:DP:GQ:PL    0/1:14,6:20:99:130,0,152
12    105151386    .    C    T    320.34    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.169;DP=25;Dels=0.0;FS=1.706;HRun=0;HaplotypeScore=1.7834;MQ=58.13;MQ0=0;MQRankSum=-0.027;QD=12.81;ReadPosRankSum=-1.115;SNPEFF_AMINO_ACID_CHANGE=Y283;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_105150727_105155792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHST11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000549260    GT:AD:DP:GQ:PL    0/1:12,13:25:99:350,0,386
12    105151773    .    T    G    108.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.43;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHST11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549016    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,101
12    105260159    rs72217956    TACACAC    T    1046.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=180.9653;IndelType=D;MQ=37.72;MQ0=0;QD=41.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258538    GT:AD:DP:GQ:PL    1/1:6,16:25:57.19:1089,57,0
12    105260365    rs34984157    TA    T    179.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.334;DB;DP=35;FS=0.0;HRun=17;HaplotypeScore=229.0886;IndelType=D;MQ=47.37;MQ0=0;MQRankSum=-1.149;QD=5.13;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258538    GT:AD:DP:GQ:PL    1/1:17,14:35:6.14:220,6,0
12    105279931    rs17829927    C    A    146.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC41A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258538    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:180,15,0
12    105425415    rs4964311    T    C    181.74    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.648;QD=11.36;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:7,9:16:99:212,0,199
12    105431835    rs10861315    T    G    80.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=11.48;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:3,4:7:99:110,0,100
12    105432141    rs12227643    T    C    32.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.95;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:63,0,34
12    105433463    rs4964120    C    T    357.70    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.557;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.015;QD=9.17;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:25,14:39:99:388,0,894
12    105433523    rs4964317    T    A    683.29    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.039;DB;DP=69;Dels=0.0;FS=0.937;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.314;QD=9.9;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=G671;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_105433491_105433584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:42,27:69:99:713,0,1223
12    105433607    rs4964318    G    A    340.14    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=38;Dels=0.0;FS=1.921;HRun=0;HaplotypeScore=1.86;MQ=60.0;MQ0=0;MQRankSum=0.154;QD=8.95;ReadPosRankSum=1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:25,13:38:99:370,0,837
12    105433702    rs7315784    A    T    132.42    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=16.55;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:3,5:8:95.76:162,0,96
12    105433770    rs7316236    G    T    92.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=15.38;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:2,4:6:63.51:122,0,64
12    105433811    rs7133683    A    G    35.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=8.9;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:66,0,69
12    105434467    rs11112330    C    T    3116.47    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=8.033;DB;DP=181;DS;Dels=0.0;FS=4.828;HRun=0;HaplotypeScore=1.5762;MQ=59.87;MQ0=0;MQRankSum=-2.983;QD=17.22;ReadPosRankSum=0.81;SNPEFF_AMINO_ACID_CHANGE=T623;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_105434385_105434472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:78,103:181:99:3146,0,2040
12    105434533    rs10861316    C    A    1248.82    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.989;DB;DP=80;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-2.117;QD=15.61;ReadPosRankSum=-0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    0/1:36,44:80:99:1279,0,1207
12    105440421    rs10861324    T    G    294.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.925;QD=24.51;ReadPosRankSum=2.404;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424857    GT:AD:DP:GQ:PL    0/1:3,9:12:83.85:324,0,84
12    105440863    rs10778364    C    T    233.93    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.556;QD=15.6;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424857    GT:AD:DP:GQ:PL    0/1:7,8:15:99:264,0,201
12    105445798    rs61938827    C    A    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548583    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
12    105446092    rs140372840    AT    A    1031.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=4;HaplotypeScore=82.1716;IndelType=D;MQ=60.95;MQ0=0;QD=30.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548583    GT:AD:DP:GQ:PL    1/1:4,30:34:90.27:1073,90,0
12    105446552    rs56188643    T    C    1004.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548583    GT:AD:DP:GQ:PL    1/1:0,28:28:78.22:1037,78,0
12    105446719    rs56118650    G    T    1053.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548583    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1086,78,0
12    105446831    rs11112347    T    C    272.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=24.77;ReadPosRankSum=-0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548583    GT:AD:DP:GQ:PL    1/1:1,10:11:27.06:305,27,0
12    105454517    rs12367626    A    G    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.72;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
12    105455651    rs6539183    A    G    164.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    1/1:0,7:7:18:197,18,0
12    105456981    rs7311691    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    105458907    rs6539185    C    T    67.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    1/1:0,3:3:9:99,9,0
12    105479103    rs4356313    A    G    452.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ALDH1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258494    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:485,36,0
12    105504764    rs1196839    G    A    194.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
12    105504787    rs1196838    G    A    321.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
12    105509160    rs1196801    G    T    363.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:396,30,0
12    105514480    rs1196837    A    G    378.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=29.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548195    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:411,33,0
12    105514786    rs1196836    G    T    585.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=39.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548195    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:619,45,0
12    105519626    rs1196826    A    G    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
12    105520309    rs1196825    G    A    176.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547404    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
12    105527385    rs1211276    G    C    208.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
12    105527889    rs2464175    G    C    256.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,7:8:21.07:289,21,0
12    105533888    rs1196809    A    C    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
12    105534025    rs1196808    G    A    1751.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1785,135,0
12    105536430    rs5800652    C    CTA    480.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=22.8755;IndelType=I;MQ=60.0;MQ0=0;QD=53.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:522,27,0
12    105538417    rs148267591    AGTT    A    492.96    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.47;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=60.865;IndelType=D;MQ=53.4;MQ0=0;MQRankSum=-0.134;QD=37.92;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    0/1:1,12:13:25.78:532,0,26
12    105540098    rs1196803    T    C    323.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:357,30,0
12    105540322    .    A    AT    404.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.376;DP=27;FS=0.0;HRun=12;HaplotypeScore=115.864;IndelType=I;MQ=59.5;MQ0=0;MQRankSum=1.059;QD=14.97;ReadPosRankSum=-0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550613    GT:AD:DP:GQ:PL    1/1:10,17:27:9.72:445,10,0
12    105543326    rs1196802    T    G    990.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311317    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1023,78,0
12    105546172    rs1663564    G    A    1876.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.5;SNPEFF_AMINO_ACID_CHANGE=V901I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_105546121_105546229;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332180    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1909,138,0
12    105554121    rs1196878    T    C    211.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=26.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1033;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550786    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:245,18,0
12    105568122    rs935241    G    A    986.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.53;SNPEFF_AMINO_ACID_CHANGE=N186;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_105568116_105568226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553109    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1019,75,0
12    105568176    rs935240    G    A    1242.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.56;SNPEFF_AMINO_ACID_CHANGE=D168;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_105568116_105568226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553109    GT:AD:DP:GQ:PL    1/1:0,34:34:93.31:1276,93,0
12    105582245    rs1196852    A    G    684.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258530    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:718,51,0
12    105589554    rs1196743    C    T    229.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549573    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:263,21,0
12    105604853    rs1196759    C    T    113.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549056    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:146,12,0
12    105610717    rs2440691    T    G    211.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258530    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
12    105611551    rs117675758    T    C    142.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8893;MQ=57.47;MQ0=0;MQRankSum=-0.177;QD=9.51;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258530    GT:AD:DP:GQ:PL    0/1:9,6:15:99:173,0,316
12    105907310    rs17037272    C    T    153.79    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9973;MQ=58.2;MQ0=0;MQRankSum=-0.811;QD=11.83;ReadPosRankSum=-1.791;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,6:13:99:184,0,208
12    105907431    rs59674166    C    T    760.10    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.526;DB;DP=61;Dels=0.0;FS=5.682;HRun=0;HaplotypeScore=0.0;MQ=57.58;MQ0=0;MQRankSum=-0.297;QD=12.46;ReadPosRankSum=0.934;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:33,28:61:99:790,0,1014
12    105907449    rs17197328    G    C    2170.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.86;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2204,157,0
12    105907500    rs17037274    G    A    1087.88    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DB;DP=71;Dels=0.0;FS=6.226;HRun=0;HaplotypeScore=1.9956;MQ=58.88;MQ0=0;MQRankSum=-0.96;QD=15.32;ReadPosRankSum=-0.512;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,36:71:99:1118,0,1045
12    105907538    rs61568061    C    A    942.47    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.129;DB;DP=71;Dels=0.0;FS=8.356;HRun=1;HaplotypeScore=1.9731;MQ=59.15;MQ0=0;MQRankSum=1.688;QD=13.27;ReadPosRankSum=1.279;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,33:71:99:972,0,1095
12    105907706    rs57057180    G    A    289.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
12    106410241    rs76530935    G    T    46.63    QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.551;DB;DP=202;Dels=0.0;FS=12.137;HRun=0;HaplotypeScore=0.9665;MQ=55.82;MQ0=2;MQRankSum=-6.463;QD=0.23;ReadPosRankSum=1.645;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ST13P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546640    GT:AD:DP:GQ:PL    0/1:175,26:202:76.62:77,0,5864
12    106460938    rs3741883    G    C    100.57    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.326;DB;DP=26;Dels=0.0;FS=6.55;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=3.87;ReadPosRankSum=-1.193;SNPEFF_AMINO_ACID_CHANGE=P543R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_106457118_106461733;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261402    GT:AD:DP:GQ:PL    0/1:15,11:26:99:131,0,510
12    106464310    rs892269    T    C    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261402    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,69
12    106464785    rs4964437    G    C    33.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.59;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261402    GT:AD:DP:GQ:PL    0/1:3,3:6:63.53:64,0,111
12    106480450    rs2251027    A    G    117.71    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.847;QD=7.36;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261402    GT:AD:DP:GQ:PL    0/1:7,9:16:99:148,0,225
12    106500158    rs35769739    GT    G    161.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=54.5334;IndelType=D;MQ=51.64;MQ0=0;MQRankSum=0.48;QD=13.44;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261402    GT:AD:DP:GQ:PL    0/1:4,8:12:37.17:200,0,37
12    106500408    rs1427785    T    C    81.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=15;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=5.42;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261402    GT:AD:DP:GQ:PL    0/1:9,6:15:99:111,0,263
12    106532072    rs1215597    C    A    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261402    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
12    106704974    rs4964460    G    A    323.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.562;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.635;QD=11.99;ReadPosRankSum=0.903;SNPEFF_AMINO_ACID_CHANGE=A41T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_106704819_106705010;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299045    GT:AD:DP:GQ:PL    0/1:15,12:27:99:354,0,506
12    106708278    rs2253838    T    G    411.32    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=29;Dels=0.03;FS=12.979;HRun=5;HaplotypeScore=5.5994;MQ=57.66;MQ0=0;MQRankSum=0.022;QD=13.71;ReadPosRankSum=-1.483;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548428    GT:AD:DP:GQ:PL    0/1:12,17:29:99:441,0,373
12    106717224    rs12424952    C    A    186.25    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.41;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=8.47;ReadPosRankSum=-0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299045    GT:AD:DP:GQ:PL    0/1:15,7:22:99:216,0,530
12    106734468    rs58297001    G    A    254.45    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=21.2;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP11L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299045    GT:AD:DP:GQ:PL    0/1:3,9:12:89.89:284,0,90
12    106763013    rs7134881    C    T    1772.01    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=115;Dels=0.0;FS=6.217;HRun=2;HaplotypeScore=0.5784;MQ=59.8;MQ0=0;MQRankSum=-0.137;QD=15.41;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228347    GT:AD:DP:GQ:PL    0/1:59,56:115:99:1802,0,1790
12    106763268    rs7135054    A    G    391.61    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=29;Dels=0.0;FS=5.649;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.504;QD=13.5;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228347    GT:AD:DP:GQ:PL    0/1:16,13:29:99:422,0,542
12    106771935    rs10861587    A    G    118.09    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=9.08;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228347    GT:AD:DP:GQ:PL    0/1:8,5:13:99:148,0,293
12    106895255    .    C    CA    264.51    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DP=15;FS=0.0;HRun=2;HaplotypeScore=52.0697;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=17.63;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228347    GT:AD:DP:GQ:PL    0/1:7,8:15:99:304,0,181
12    107002558    rs144897528    CT    C    54.47    QDFilter2    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.097;DB;DP=34;FS=2.793;HRun=14;HaplotypeScore=138.4929;IndelType=D;MQ=58.26;MQ0=0;MQRankSum=-1.001;QD=1.6;ReadPosRankSum=-1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266774    GT:AD:DP:GQ:PL    0/1:25,9:34:93.50:93,0,347
12    107002709    rs17334075    T    C    271.15    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.171;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=2.375;QD=10.85;ReadPosRankSum=-0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266774    GT:AD:DP:GQ:PL    0/1:13,12:25:99:301,0,458
12    107080617    rs113635608    CTT    C    288.20    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=4.347;DB;DP=52;FS=3.992;HRun=13;HaplotypeScore=327.1234;IndelType=D;MQ=57.84;MQ0=0;MQRankSum=-1.798;QD=5.54;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546882    GT:AD:DP:GQ:PL    0/1:29,17:52:99:327,0,935
12    107080638    rs35135631    TCC    T    932.13    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=3.649;DB;DP=67;FS=3.223;HRun=3;HaplotypeScore=336.8426;IndelType=D;MQ=57.81;MQ0=0;MQRankSum=-0.272;QD=13.91;ReadPosRankSum=0.272;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546882    GT:AD:DP:GQ:PL    0/1:49,18:67:99:971,0,1463
12    107083031    rs9804754    G    A    621.19    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.238;DB;DP=32;Dels=0.0;FS=4.715;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.798;QD=19.41;ReadPosRankSum=-0.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549040    GT:AD:DP:GQ:PL    0/1:12,20:32:99:651,0,409
12    107090201    rs10778502    T    C    789.01    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.125;DB;DP=47;Dels=0.0;FS=8.403;HRun=1;HaplotypeScore=3.8187;MQ=59.51;MQ0=0;MQRankSum=0.357;QD=16.79;ReadPosRankSum=1.257;SNPEFF_AMINO_ACID_CHANGE=T176;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_107090061_107090224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000229387    GT:AD:DP:GQ:PL    0/1:17,30:47:99:819,0,385
12    107126065    rs7307472    A    G    1123.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.28;DB;DP=65;Dels=0.0;FS=1.165;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.28;QD=17.28;ReadPosRankSum=1.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229387    GT:AD:DP:GQ:PL    0/1:26,39:65:99:1153,0,740
12    107144186    rs10778507    C    T    51.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.84;MQ0=0;MQRankSum=0.55;QD=7.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229387    GT:AD:DP:GQ:PL    0/1:4,3:7:81.09:81,0,87
12    107144328    rs12424114    A    G    1380.24    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.048;DB;DP=140;Dels=0.0;FS=2.573;HRun=0;HaplotypeScore=9.8295;MQ=58.28;MQ0=0;MQRankSum=0.931;QD=9.86;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229387    GT:AD:DP:GQ:PL    0/1:77,63:140:99:1410,0,2382
12    107191666    rs73397315    C    T    68.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.44;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIC8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355478    GT:AD:DP:GQ:PL    0/1:3,3:6:98.62:99,0,106
12    107364873    rs10778520    C    T    476.52    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.208;DB;DP=43;Dels=0.0;FS=1.218;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.575;QD=11.08;ReadPosRankSum=-0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280756    GT:AD:DP:GQ:PL    0/1:24,19:43:99:507,0,762
12    107372277    rs1043156    C    T    1536.91    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.801;DB;DP=131;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6809;MQ=59.82;MQ0=0;MQRankSum=0.65;QD=11.73;ReadPosRankSum=-1.515;SNPEFF_AMINO_ACID_CHANGE=E72;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_107371069_107372549;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTERFD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240050    GT:AD:DP:GQ:PL    0/1:71,60:131:99:1567,0,2402
12    107713696    rs111260184    G    A    123.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=A327T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_107712190_107713852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280758    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
12    107713963    rs71442718    A    G    125.95    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=9.69;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280758    GT:AD:DP:GQ:PL    0/1:8,5:13:99:156,0,253
12    108003911    rs4964599    T    C    1643.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.8734;MQ=59.56;MQ0=0;QD=31.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280758    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1677,126,0
12    108008772    rs10492158    C    T    225.75    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=22.57;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415943    GT:AD:DP:GQ:PL    0/1:3,7:10:94.54:256,0,95
12    108029186    rs73187339    C    A    617.78    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.144;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.399;QD=21.3;ReadPosRankSum=-1.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280758    GT:AD:DP:GQ:PL    0/1:8,20:29:99:648,0,245
12    108086697    rs2287216    T    C    923.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=27.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258531    GT:AD:DP:GQ:PL    1/1:0,33:33:81.24:956,81,0
12    108096532    rs12227989    T    C    94.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546068    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
12    108104407    rs2302737    C    T    343.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=53.03;MQ0=0;QD=24.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258531    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:376,30,0
12    108127965    rs17306603    A    G    1771.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.033;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.817;QD=32.81;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550376    GT:AD:DP:GQ:PL    1/1:1,53:54:99:1805,105,0
12    108136172    rs2302734    A    G    1603.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228437    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1637,120,0
12    108140032    rs3803120    T    C    1539.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.62;MQ0=0;QD=25.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228437    GT:AD:DP:GQ:PL    1/1:0,59:60:99:1572,120,0
12    108146071    rs7302814    C    T    295.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547188    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:329,24,0
12    108147982    rs4964617    C    T    172.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228437    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
12    108150758    rs1814335    C    A    588.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228437    GT:AD:DP:GQ:PL    1/1:0,22:22:48.11:621,48,0
12    108154199    rs2302733    A    G    1070.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228437    GT:AD:DP:GQ:PL    1/1:0,35:35:84.26:1104,84,0
12    108600237    rs1106752    A    G    2377.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261400    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2410,181,0
12    108618253    rs17320521    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261400    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    108618630    rs3764002    C    T    632.92    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.344;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.541;QD=21.82;ReadPosRankSum=1.673;SNPEFF_AMINO_ACID_CHANGE=T113I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108618516_108618637;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSCD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000551638    GT:AD:DP:GQ:PL    0/1:10,19:29:99:663,0,251
12    108618842    rs724833    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261400    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    108910962    rs2303634    C    T    353.89    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.88;DB;DP=16;Dels=0.0;FS=2.796;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.152;QD=22.12;ReadPosRankSum=-1.637;SNPEFF_AMINO_ACID_CHANGE=A71;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108910692_108911050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FICD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361549    GT:AD:DP:GQ:PL    0/1:4,12:16:90.46:384,0,90
12    108918146    rs2303633    C    T    1459.68    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=4.357;DB;DP=110;Dels=0.0;FS=9.463;HRun=0;HaplotypeScore=2.8243;MQ=59.83;MQ0=0;MQRankSum=-0.909;QD=13.27;ReadPosRankSum=-1.098;SNPEFF_AMINO_ACID_CHANGE=P126;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108917646_108918283;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547397    GT:AD:DP:GQ:PL    0/1:59,51:110:99:1490,0,1753
12    108918431    rs7307731    C    T    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FICD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552695    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,90
12    108919674    rs7312445    G    A    78.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.63;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FICD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546448    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:108,0,31
12    108923950    rs1549096    A    G    1406.46    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.421;DB;DP=127;Dels=0.0;FS=15.545;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=11.07;ReadPosRankSum=1.72;SNPEFF_AMINO_ACID_CHANGE=D204;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108923919_108924087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535329    GT:AD:DP:GQ:PL    0/1:69,58:127:99:1436,0,2124
12    108929020    rs56210595    A    G    265.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.625;QD=14.75;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548119    GT:AD:DP:GQ:PL    0/1:9,9:18:99:295,0,281
12    108929450    rs7301731    C    T    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548119    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
12    108930109    rs2032764    A    G    392.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.128;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=15.08;ReadPosRankSum=0.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548119    GT:AD:DP:GQ:PL    0/1:13,13:26:99:422,0,451
12    108930284    rs58100842    A    T    3430.24    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=3.649;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.5608;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=13.72;ReadPosRankSum=-1.601;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548119    GT:AD:DP:GQ:PL    0/1:120,130:250:99:3430,0,3594
12    108931779    rs2287550    C    A    119.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=7.99;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228284    GT:AD:DP:GQ:PL    0/1:10,5:15:99:150,0,362
12    108932053    rs2287551    C    T    357.33    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.729;DB;DP=26;Dels=0.0;FS=2.156;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.209;QD=13.74;ReadPosRankSum=1.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550322    GT:AD:DP:GQ:PL    0/1:14,12:26:99:387,0,340
12    108932100    rs7978765    G    A    143.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.378;QD=11.96;ReadPosRankSum=-0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550322    GT:AD:DP:GQ:PL    0/1:6,6:12:99:173,0,212
12    108932134    rs73189233    G    A    102.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.84;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550322    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,144
12    108932199    .    C    T    36.33    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550322    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
12    108932916    rs7133076    C    T    311.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.985;QD=14.15;ReadPosRankSum=-0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550322    GT:AD:DP:GQ:PL    0/1:11,11:22:99:341,0,389
12    108938750    rs2075357    T    G    628.67    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.96;QD=16.99;ReadPosRankSum=1.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550619    GT:AD:DP:GQ:PL    0/1:17,20:37:99:659,0,559
12    108941700    rs11113986    C    G    234.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.296;DB;DP=18;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.7887;MQ=59.01;MQ0=0;MQRankSum=0.971;QD=12.33;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=V117;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108941663_108941767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412617    GT:AD:DP:GQ:PL    0/1:9,9:18:99:264,0,283
12    108943028    rs2052423    G    A    341.76    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.137;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.082;QD=13.67;ReadPosRankSum=0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228284    GT:AD:DP:GQ:PL    0/1:14,11:25:99:372,0,449
12    108954823    rs1063936    C    T    425.99    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.449;DB;DP=39;Dels=0.0;FS=7.399;HRun=2;HaplotypeScore=0.9997;MQ=59.41;MQ0=0;MQRankSum=0.714;QD=10.92;ReadPosRankSum=-2.203;SNPEFF_AMINO_ACID_CHANGE=G10E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108954777_108954944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SART3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412617    GT:AD:DP:GQ:PL    0/1:20,19:39:99:456,0,616
12    108956417    rs10778647    T    G    148.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.57;SNPEFF_AMINO_ACID_CHANGE=F7V;SNPEFF_CODON_CHANGE=Ttc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108956377_108956512;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ISCU;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311893    GT:AD:DP:GQ:PL    1/1:0,8:8:18.03:181,18,0
12    108956418    rs10778648    T    G    156.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.58;SNPEFF_AMINO_ACID_CHANGE=F7C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108956377_108956512;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ISCU;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311893    GT:AD:DP:GQ:PL    1/1:0,7:8:18.04:190,18,0
12    108956526    rs76192080    A    AG    336.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=20.7953;IndelType=I;MQ=51.77;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ISCU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311893    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:378,27,0
12    108960906    rs10861945    G    T    487.92    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;MQRankSum=0.577;QD=18.07;ReadPosRankSum=-0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ISCU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311893    GT:AD:DP:GQ:PL    0/1:10,17:27:99:518,0,286
12    108985945    rs7975237    A    G    1171.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.644;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.31;MQ0=0;MQRankSum=-1.436;QD=33.47;ReadPosRankSum=1.535;SNPEFF_AMINO_ACID_CHANGE=I6T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108985052_108985994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM119;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433191    GT:AD:DP:GQ:PL    1/1:1,34:35:56.30:1205,56,0
12    108986031    rs74504010    C    T    88.69    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=17;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=5.3657;MQ=47.98;MQ0=0;MQRankSum=-0.466;QD=5.22;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=E43;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108983622_108986173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM119;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392806    GT:AD:DP:GQ:PL    0/1:9,8:17:99:119,0,163
12    108986112    rs10861953    G    C    126.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=12.61;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=L16;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_108983622_108986173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM119;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392806    GT:AD:DP:GQ:PL    0/1:4,6:10:99:156,0,128
12    109017692    .    G    A    50.92    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.284;DP=24;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;MQRankSum=-2.879;QD=2.12;ReadPosRankSum=-1.501;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SELPLG;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000388962    GT:AD:DP:GQ:PL    0/1:20,4:24:80.92:81,0,398
12    109041375    .    T    TA    326.32    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.333;DP=16;FS=0.0;HRun=4;HaplotypeScore=34.0739;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=-0.212;QD=20.39;ReadPosRankSum=-0.071;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547361    GT:AD:DP:GQ:PL    0/1:6,10:16:94.06:365,0,94
12    109052330    rs6539450    T    G    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546571    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:73,0,30
12    109095137    rs3741782    A    G    144.52    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=12.04;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261401    GT:AD:DP:GQ:PL    0/1:7,5:12:99:175,0,237
12    109194449    rs35286763    TC    T    570.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=6;HaplotypeScore=74.2479;IndelType=D;MQ=56.45;MQ0=0;QD=28.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303438    GT:AD:DP:GQ:PL    1/1:1,19:20:57.14:613,57,0
12    109210599    rs34958057    A    ACT    914.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=45.7517;IndelType=I;MQ=58.71;MQ0=0;QD=50.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303438    GT:AD:DP:GQ:PL    1/1:2,16:18:51.17:956,51,0
12    109511144    rs7967182    T    C    177    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536393    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
12    109511256    rs7967322    T    C    672.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_AMINO_ACID_CHANGE=P182;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109511243_109511337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392784    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:706,54,0
12    109520769    rs16939904    A    G    586.59    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.079;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.192;QD=14.66;ReadPosRankSum=-0.164;SNPEFF_AMINO_ACID_CHANGE=H326R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109520648_109520867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392784    GT:AD:DP:GQ:PL    0/1:17,23:40:99:617,0,535
12    109520876    rs59162254    G    A    301.68    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.275;DB;DP=24;Dels=0.0;FS=2.395;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.57;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377883    GT:AD:DP:GQ:PL    0/1:11,13:24:99:332,0,371
12    109522684    rs78073059    A    T    3412.55    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.333;DB;DP=218;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9066;MQ=59.89;MQ0=0;MQRankSum=-0.808;QD=15.65;ReadPosRankSum=1.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343075    GT:AD:DP:GQ:PL    0/1:103,114:218:99:3413,0,3156
12    109528018    rs76283368    C    A    467.14    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.357;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.642;QD=11.98;ReadPosRankSum=-1.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536720    GT:AD:DP:GQ:PL    0/1:23,16:39:99:497,0,780
12    109530278    rs72128843    G    GCA    379.76    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=46.6929;IndelType=I;MQ=56.59;MQ0=1;MQRankSum=1.826;QD=23.73;ReadPosRankSum=-0.967;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257548    GT:AD:DP:GQ:PL    0/1:6,9:15:35.03:419,0,35
12    109540867    .    A    G    211.05    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.666;QD=23.45;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540158    GT:AD:DP:GQ:PL    0/1:2,7:9:32.05:241,0,32
12    109547568    rs71079524    CA    C    94.74    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=46;FS=0.0;HRun=18;HaplotypeScore=315.1834;IndelType=D;MQ=53.67;MQ0=0;MQRankSum=-0.623;QD=2.06;ReadPosRankSum=-0.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242576    GT:AD:DP:GQ:PL    0/1:28,15:46:99:134,0,169
12    109547586    rs2878959    A    T    165    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.223;DB;DP=66;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=9.9093;MQ=54.6;MQ0=0;MQRankSum=0.345;QD=2.5;ReadPosRankSum=0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242576    GT:AD:DP:GQ:PL    0/1:30,36:66:99:195,0,635
12    109577735    rs2878960    C    T    3937.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=S175;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109577202_109577863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3938,289,0
12    109604499    rs34282    C    A    192.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.19;MQ0=0;QD=24.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    1/1:1,7:8:18.04:226,18,0
12    109605898    rs34285    C    T    454.40    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.02;DB;DP=31;Dels=0.0;FS=5.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.838;QD=14.66;ReadPosRankSum=0.455;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546328    GT:AD:DP:GQ:PL    0/1:15,16:31:99:484,0,493
12    109605996    rs34286    T    C    314.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546328    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:348,30,0
12    109609897    rs3759388    A    T    73.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.45;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546328    GT:AD:DP:GQ:PL    0/1:3,4:7:99:103,0,100
12    109617865    rs11065772    T    C    827.07    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.556;DB;DP=59;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=2.9408;MQ=59.22;MQ0=0;MQRankSum=-0.571;QD=14.02;ReadPosRankSum=1.821;SNPEFF_AMINO_ACID_CHANGE=D597;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109617722_109617892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:27,32:59:99:857,0,800
12    109623336    rs7978168    G    A    169.19    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.313;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8317;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=9.95;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:9,8:17:99:199,0,239
12    109625976    .    CTCCT    C    268.72    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DP=28;FS=4.771;HRun=0;HaplotypeScore=155.919;IndelType=D;MQ=58.68;MQ0=0;MQRankSum=0.825;QD=9.6;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:20,7:28:99:308,0,150
12    109629457    rs7135947    C    T    714.25    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.535;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.468;QD=15.53;ReadPosRankSum=1.718;SNPEFF_AMINO_ACID_CHANGE=G728;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109629418_109629568;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:19,27:46:99:744,0,524
12    109635031    rs2268393    A    G    149.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.572;QD=18.71;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:2,6:8:60.17:180,0,60
12    109637188    rs7299171    G    C    389.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.69;DB;DP=25;Dels=0.0;FS=4.06;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.194;QD=15.59;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:10,15:25:99:420,0,259
12    109639609    rs2284690    T    C    72.65    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.16;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:1,3:4:14.65:103,0,15
12    109644357    rs12818314    G    A    416.83    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=4.604;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.46;QD=13.89;ReadPosRankSum=0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:17,13:30:99:447,0,518
12    109644447    rs12818490    G    A    1954.02    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=5.153;DB;DP=142;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2223;MQ=59.35;MQ0=0;MQRankSum=0.152;QD=13.76;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:72,70:142:99:1984,0,1726
12    109647280    rs2239607    A    G    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
12    109650546    rs2300454    T    C    371.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.026;QD=14.28;ReadPosRankSum=1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:14,12:26:99:401,0,504
12    109670468    rs3742027    T    C    1201.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1234,96,0
12    109670657    rs3742026    G    C    295.23    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.277;DB;DP=31;Dels=0.0;FS=1.664;HRun=0;HaplotypeScore=0.9665;MQ=58.5;MQ0=0;MQRankSum=1.327;QD=9.52;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:16,15:31:99:325,0,434
12    109675029    rs2241220    T    C    603.15    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.568;DB;DP=64;Dels=0.0;FS=9.009;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.749;QD=9.42;ReadPosRankSum=-1.646;SNPEFF_AMINO_ACID_CHANGE=L1432;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109674970_109675185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377854    GT:AD:DP:GQ:PL    0/1:39,25:64:99:633,0,1185
12    109683575    rs10744772    A    G    188.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=20;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=1.196;QD=9.43;ReadPosRankSum=-1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534852    GT:AD:DP:GQ:PL    0/1:12,8:20:99:219,0,399
12    109684125    rs61752535    G    A    975.89    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.216;DB;DP=59;Dels=0.0;FS=1.029;HRun=1;HaplotypeScore=1.81;MQ=60.0;MQ0=0;MQRankSum=2.171;QD=16.54;ReadPosRankSum=-0.681;SNPEFF_AMINO_ACID_CHANGE=E1046K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109683984_109684253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390027    GT:AD:DP:GQ:PL    0/1:28,31:59:99:1006,0,827
12    109685545    rs2284689    A    G    2724.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=38.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537347    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2758,205,0
12    109691991    rs2075259    A    G    3490.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.55;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396233    GT:AD:DP:GQ:PL    1/1:0,102:103:99:3491,259,0
12    109693982    rs3742023    C    T    216.25    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=1.076;DB;DP=30;Dels=0.0;FS=3.312;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.086;QD=7.21;ReadPosRankSum=-1.248;SNPEFF_AMINO_ACID_CHANGE=H1299;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109693945_109694041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390027    GT:AD:DP:GQ:PL    0/1:19,11:30:99:246,0,630
12    109696838    rs2075260    G    A    6737.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=192;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7635;MQ=59.76;MQ0=0;QD=35.09;SNPEFF_AMINO_ACID_CHANGE=V1372I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109696778_109696913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390027    GT:AD:DP:GQ:PL    1/1:0,192:192:99:6738,494,0
12    109697796    rs2075261    A    G    909.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.44;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    1/1:1,26:27:75.22:943,75,0
12    109698566    rs7298135    T    A    726.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    1/1:0,22:22:60.16:760,60,0
12    109701959    rs35795929    CA    C    407.94    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.507;DB;DP=106;FS=1.325;HRun=15;HaplotypeScore=506.3772;IndelType=D;MQ=56.54;MQ0=0;MQRankSum=1.621;QD=3.81;ReadPosRankSum=-0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:59,39:106:99:447,0,726
12    109704177    rs2075262    G    A    206.81    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.286;DB;DP=27;Dels=0.0;FS=2.003;HRun=0;HaplotypeScore=5.4086;MQ=57.73;MQ0=0;MQRankSum=0.122;QD=7.66;ReadPosRankSum=0.694;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    0/1:11,9:27:99:237,0,262
12    109704325    rs2075263    C    T    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338432    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
12    109717697    rs10774641    A    G    724.27    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.052;DB;DP=67;Dels=0.0;FS=2.074;HRun=1;HaplotypeScore=1.9497;MQ=59.31;MQ0=0;MQRankSum=-0.256;QD=10.81;ReadPosRankSum=-0.654;SNPEFF_AMINO_ACID_CHANGE=L265;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109715784_109717735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FOXN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355216    GT:AD:DP:GQ:PL    0/1:33,34:67:99:754,0,1110
12    109723079    rs10774644    T    C    220.76    PASS    AB=0.312;AC=1;AF=0.50;AN=2;BaseQRankSum=1.02;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9963;MQ=52.32;MQ0=0;MQRankSum=1.473;QD=13.8;ReadPosRankSum=1.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FOXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266856    GT:AD:DP:GQ:PL    0/1:5,11:16:9.36:251,0,9
12    109723233    rs17177336    G    A    992.45    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.14;MQ0=0;MQRankSum=0.035;QD=18.38;ReadPosRankSum=0.525;SNPEFF_AMINO_ACID_CHANGE=R218W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109723109_109723316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FOXN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266856    GT:AD:DP:GQ:PL    0/1:23,31:54:99:1022,0,607
12    109826634    rs11611277    C    A    7655.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;DB;DP=247;DS;Dels=0.0;FS=2.107;HRun=0;HaplotypeScore=3.9812;MQ=59.34;MQ0=0;MQRankSum=0.184;QD=30.99;ReadPosRankSum=0.276;SNPEFF_AMINO_ACID_CHANGE=S37R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109826524_109826649;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:3,243:247:99:7656,485,0
12    109830980    rs7958220    T    C    904.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:938,69,0
12    109831344    .    T    TCATCCAACCATTCATCCATC    4577.98    PASS    AC=2;AF=1.00;AN=2;DP=42;FS=0.0;HRun=0;HaplotypeScore=529.33;IndelType=I;MQ=55.39;MQ0=0;QD=109.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:3,30:42:99:4578,120,0
12    109831356    rs9669721    C    T    77.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.569;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9996;MQ=49.08;MQ0=0;MQRankSum=0.144;QD=2.69;ReadPosRankSum=0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:24,5:29:9.03:110,9,0
12    109835590    rs11611358    A    G    4135.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.296;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.225;QD=33.08;ReadPosRankSum=0.38;SNPEFF_AMINO_ACID_CHANGE=K165;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109835537_109835617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:1,123:124:99:4135,272,0
12    109843594    rs9888353    G    A    881.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:915,69,0
12    109844432    rs11066505    A    G    199.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
12    109844702    rs12425103    C    T    2125.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.62;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2159,166,0
12    109845660    rs117442521    T    A    1664.92    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.333;DB;DP=122;Dels=0.0;FS=3.327;HRun=0;HaplotypeScore=1.8606;MQ=56.1;MQ0=0;MQRankSum=2.91;QD=13.65;ReadPosRankSum=0.942;SNPEFF_AMINO_ACID_CHANGE=V350D;SNPEFF_CODON_CHANGE=gTt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109845599_109845718;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:60,62:122:99:1695,0,1740
12    109845778    rs3068978    C    CATT    5102.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.0;HRun=0;HaplotypeScore=189.9068;IndelType=I;MQ=54.81;MQ0=0;QD=69.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542883    GT:AD:DP:GQ:PL    1/1:1,70:73:99:5102,217,0
12    109847587    rs1469944    A    T    535.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542883    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:569,45,0
12    109848567    rs7315991    T    C    1497.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_AMINO_ACID_CHANGE=S452;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109848493_109848573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1530,114,0
12    109853306    rs4766598    A    G    60.58    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=12;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.398;QD=5.05;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:7,5:12:90.57:91,0,217
12    109853462    rs4766471    G    A    134.06    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.533;QD=9.58;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:9,5:14:99:164,0,279
12    109858665    rs11066538    G    A    100.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.51;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:4,4:8:99:130,0,135
12    109863721    rs67083809    TTC    T    721    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.372;DB;DP=44;FS=4.488;HRun=0;HaplotypeScore=153.852;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=-0.455;QD=16.39;ReadPosRankSum=0.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:22,22:44:99:760,0,795
12    109874230    rs2075432    A    G    605.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:639,48,0
12    109876128    rs10850141    C    T    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:67,0,30
12    109877303    .    T    TGGCCTGTGGCCTACATTCCA    4473.49    PASS    AC=2;AF=1.00;AN=2;DP=19;FS=0.0;HRun=0;HaplotypeScore=229.6747;IndelType=I;MQ=33.02;MQ0=0;QD=235.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:10,7:19:54.18:4473,54,0
12    109879292    rs11608355    T    C    254.87    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.99;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:7,8:15:99:285,0,231
12    109879972    rs78063180    C    T    922.61    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.819;DB;DP=74;Dels=0.0;FS=6.181;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.569;QD=12.47;ReadPosRankSum=0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:41,33:74:99:953,0,1323
12    109881097    .    A    G    41.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=1.537;QD=6.88;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    0/1:3,3:6:54.83:71,0,55
12    109881160    rs10545297    TACACAC    T    326.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=173.8411;IndelType=D;MQ=51.52;MQ0=0;MQRankSum=-0.067;QD=27.21;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:5,7:12:18.57:368,19,0
12    109881809    rs35393419    C    T    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
12    109883117    rs3742021    T    C    70.34    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=54.56;MQ0=0;MQRankSum=0.956;QD=8.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,178
12    109883169    rs67955379    TTTCC    T    326.31    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=3.26;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=102.0311;IndelType=D;MQ=53.23;MQ0=0;MQRankSum=-1.268;QD=18.13;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:11,7:18:99:365,0,870
12    109883254    rs3742020    T    C    995.41    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.64;DB;DP=63;Dels=0.0;FS=11.342;HRun=0;HaplotypeScore=1.9866;MQ=58.52;MQ0=0;MQRankSum=-1.135;QD=15.8;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:30,33:63:99:1025,0,881
12    109883374    rs3825393    T    C    3982.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.08;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=L1001P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109883318_109883417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310903    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3983,316,0
12    109883577    rs7969719    C    T    307.19    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.003;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=23.63;ReadPosRankSum=-1.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:4,9:13:99:337,0,131
12    109893797    rs2302707    G    A    280.69    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=23.39;ReadPosRankSum=0.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535747    GT:AD:DP:GQ:PL    0/1:2,10:12:49.14:311,0,49
12    109894028    rs2302706    A    G    784.80    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.744;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=1.602;QD=19.62;ReadPosRankSum=-0.723;SNPEFF_AMINO_ACID_CHANGE=V180;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109893923_109894049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540411    GT:AD:DP:GQ:PL    0/1:14,26:40:99:815,0,389
12    109895636    rs4766605    C    A    130.12    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=2.808;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=14.46;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535747    GT:AD:DP:GQ:PL    0/1:4,5:9:99:160,0,141
12    109895958    rs11609019    G    A    57.80    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=5.78;ReadPosRankSum=0.296;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_109895797_109896790;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540089    GT:AD:DP:GQ:PL    0/1:7,3:10:87.80:88,0,262
12    109896002    rs12822891    A    G    109.14    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.83;ReadPosRankSum=-0.731;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_109895797_109896790;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540089    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:139,0,27
12    109898716    rs2302705    C    T    125.83    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=11.44;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:6,5:11:99:156,0,174
12    109898732    rs1558804    A    G    122.63    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=13.63;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:4,5:9:99:153,0,102
12    109907303    rs7969313    A    G    426.09    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.286;DB;DP=30;Dels=0.0;FS=1.8;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.825;QD=14.2;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:9,21:30:99:456,0,221
12    109907308    rs80095910    G    C    224.59    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=32;Dels=0.0;FS=1.768;HRun=0;HaplotypeScore=0.9789;MQ=59.28;MQ0=0;MQRankSum=0.418;QD=7.02;ReadPosRankSum=-1.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228495    GT:AD:DP:GQ:PL    0/1:22,10:32:99:255,0,501
12    109926207    rs34306729    A    G    366.74    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.276;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.84;MQ0=0;MQRankSum=-1.566;QD=13.1;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539843    GT:AD:DP:GQ:PL    0/1:15,13:28:99:397,0,504
12    109927827    rs73196268    C    A    777.53    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.813;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.6;MQ0=0;MQRankSum=0.701;QD=13.64;ReadPosRankSum=0.026;SNPEFF_AMINO_ACID_CHANGE=P216;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109927724_109930542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537063    GT:AD:DP:GQ:PL    0/1:28,29:57:99:808,0,831
12    109928013    rs7976796    C    T    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280774    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    109935894    rs2270361    G    C    102.30    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=11;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.3;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280774    GT:AD:DP:GQ:PL    0/1:7,4:11:99:132,0,247
12    109936211    rs56244055    G    A    966.42    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.816;DB;DP=68;Dels=0.0;FS=1.24;HRun=1;HaplotypeScore=3.4712;MQ=60.0;MQ0=0;MQRankSum=-0.332;QD=14.21;ReadPosRankSum=-0.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280774    GT:AD:DP:GQ:PL    0/1:34,33:68:99:996,0,1125
12    109936238    rs73196275    G    T    870.61    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.432;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.229;QD=16.74;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280774    GT:AD:DP:GQ:PL    0/1:24,28:52:99:901,0,771
12    109937534    rs7298565    G    A    1032.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=R346Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109937438_109937615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280774    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1066,78,0
12    109945203    rs11611012    G    A    77.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.26;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280774    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:107,0,29
12    109949134    rs3742018    C    T    41.69    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.076;QD=2.61;ReadPosRankSum=0.942;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535900    GT:AD:DP:GQ:PL    0/1:13,3:16:71.68:72,0,280
12    109959365    .    G    GT    119.95    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.287;DP=21;FS=5.909;HRun=2;HaplotypeScore=86.3628;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.787;QD=5.71;ReadPosRankSum=-1.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280774    GT:AD:DP:GQ:PL    0/1:16,5:21:99:159,0,464
12    109959389    rs67731731    TA    T    351.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DB;DP=15;FS=0.0;HRun=4;HaplotypeScore=43.9178;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.734;QD=23.41;ReadPosRankSum=0.822;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280774    GT:AD:DP:GQ:PL    0/1:3,12:15:41.95:390,0,42
12    109964102    rs7139198    C    T    292.38    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=20;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.62;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539584    GT:AD:DP:GQ:PL    0/1:9,11:20:99:322,0,325
12    109971215    rs4766608    C    T    629.73    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.35;DB;DP=39;Dels=0.0;FS=2.334;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.6;QD=16.15;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342494    GT:AD:DP:GQ:PL    0/1:19,20:39:99:660,0,595
12    109972462    .    G    A    647.45    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.904;DP=57;Dels=0.0;FS=5.937;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.0;QD=11.36;ReadPosRankSum=-0.332;SNPEFF_AMINO_ACID_CHANGE=G1028S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109972396_109974507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342494    GT:AD:DP:GQ:PL    0/1:33,24:57:99:677,0,805
12    109994870    rs9593    A    T    1712.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.93;SNPEFF_AMINO_ACID_CHANGE=M148K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_109994593_109994941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMAB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266839    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1745,126,0
12    109995097    rs888192    A    G    216.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420167    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
12    109999005    rs11610545    G    A    293.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.388;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8914;MQ=58.71;MQ0=0;MQRankSum=-0.421;QD=16.33;ReadPosRankSum=-0.983;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420167    GT:AD:DP:GQ:PL    0/1:6,12:18:99:324,0,197
12    109999037    rs2287181    G    A    190.39    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=19.04;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420167    GT:AD:DP:GQ:PL    0/1:3,7:10:97.55:220,0,98
12    109999068    rs2287180    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420167    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
12    110002777    rs10850379    C    T    212.50    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=14.17;ReadPosRankSum=1.562;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503497    GT:AD:DP:GQ:PL    0/1:8,7:15:99:242,0,287
12    110002819    rs10850380    A    G    1008.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503497    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1041,81,0
12    110013639    rs6606734    T    G    239.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228510    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:272,21,0
12    110017759    rs67886029    C    T    406.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.876;DB;DP=24;Dels=0.0;FS=9.132;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.312;QD=16.95;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228510    GT:AD:DP:GQ:PL    0/1:9,15:24:99:437,0,214
12    110018898    rs61940514    C    T    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228510    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
12    110019338    rs2287218    C    T    488.70    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=1.719;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.146;QD=18.8;ReadPosRankSum=-1.136;SNPEFF_AMINO_ACID_CHANGE=D170;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_110019200_110019355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228510    GT:AD:DP:GQ:PL    0/1:9,17:26:99:519,0,184
12    110024541    rs2270375    A    G    1159.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535044    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1193,99,0
12    110029008    rs35191208    C    T    353.82    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3459;MQ=60.0;MQ0=0;MQRankSum=0.76;QD=16.08;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545516    GT:AD:DP:GQ:PL    0/1:9,13:22:99:384,0,216
12    110029186    rs2270374    G    A    51.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=4.25;ReadPosRankSum=-1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545516    GT:AD:DP:GQ:PL    0/1:8,4:12:81.01:81,0,269
12    110029279    rs72648031    C    A    31.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.85;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545516    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:61,0,72
12    110034435    rs36021200    T    TG    308.31    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=17;FS=0.0;HRun=5;HaplotypeScore=43.4168;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=18.14;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537237    GT:AD:DP:GQ:PL    0/1:8,9:17:99:347,0,116
12    110221631    rs10774894    G    C    324.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261740    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:358,30,0
12    110231717    rs10850750    C    G    206.22    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=14;Dels=0.0;FS=2.48;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=14.73;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261740    GT:AD:DP:GQ:PL    0/1:5,9:14:99:236,0,133
12    110234658    rs3742035    T    C    131.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261740    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
12    110240838    rs3825394    T    G    655.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_AMINO_ACID_CHANGE=R190;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_110240796_110240948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536838    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:688,54,0
12    110246369    rs3742032    A    G    168.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261740    GT:AD:DP:GQ:PL    1/1:0,5:6:15.05:201,15,0
12    110246383    rs3742031    T    C    140.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261740    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:173,15,0
12    110293678    rs3782893    G    C    110.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-1.408;QD=9.21;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318348    GT:AD:DP:GQ:PL    0/1:6,6:12:99:141,0,182
12    110353172    rs3809300    T    C    439.96    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.465;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.795;QD=14.19;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCHP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536868    GT:AD:DP:GQ:PL    0/1:13,18:31:99:470,0,444
12    110418635    rs7960775    A    G    1537.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=29.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547267    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1571,132,0
12    110426653    rs59956597    CA    C    62.79    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.88;DB;DP=23;FS=0.0;HRun=23;HaplotypeScore=321.3722;IndelType=D;MQ=38.35;MQ0=0;MQRankSum=-2.176;QD=2.73;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320063    GT:AD:DP:GQ:PL    0/1:11,10:23:28.67:102,0,29
12    110426711    .    T    A    58.36    QDFilter2    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.144;DP=65;Dels=0.02;FS=0.0;HRun=4;HaplotypeScore=9.4423;MQ=51.87;MQ0=0;MQRankSum=-5.886;QD=0.88;ReadPosRankSum=0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320063    GT:AD:DP:GQ:PL    0/1:45,20:65:88.35:88,0,1486
12    110618235    rs16940805    A    G    180.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.683;DB;DP=16;Dels=0.0;FS=1.931;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=11.26;ReadPosRankSum=0.683;SNPEFF_AMINO_ACID_CHANGE=R399;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_110618227_110618376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242591    GT:AD:DP:GQ:PL    0/1:8,8:16:99:210,0,259
12    110780107    rs56243033    G    A    986.35    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.215;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.62;MQ0=0;MQRankSum=0.259;QD=16.17;ReadPosRankSum=1.326;SNPEFF_AMINO_ACID_CHANGE=A697;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_110780033_110780253;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395494    GT:AD:DP:GQ:PL    0/1:29,32:61:99:1016,0,852
12    110819513    rs138556976    C    G    60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.0;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546720    GT:AD:DP:GQ:PL    0/1:3,3:6:90:90,0,108
12    110874501    .    AT    A    538.53    PASS    AC=2;AF=1.00;AN=2;DP=26;FS=0.0;HRun=1;HaplotypeScore=298.8809;IndelType=D;MQ=46.48;MQ0=2;QD=19.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548878    GT:AD:DP:GQ:PL    1/1:14,14:26:74.06:581,74,0
12    110874504    .    T    A    103.06    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=13.5629;MQ=46.48;MQ0=2;QD=3.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548878    GT:AD:DP:GQ:PL    1/1:1,27:28:12.03:136,12,0
12    110874516    .    TAC    T    199.92    PASS    AC=2;AF=1.00;AN=2;DP=19;FS=0.0;HRun=0;HaplotypeScore=265.9756;IndelType=D;MQ=43.1;MQ0=0;QD=10.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548878    GT:AD:DP:GQ:PL    1/1:12,6:19:26.81:242,27,0
12    110905869    rs7958683    G    A    1426.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=53.2;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228827    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1460,114,0
12    110924001    rs16940878    C    T    290.90    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.925;QD=24.24;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549578    GT:AD:DP:GQ:PL    0/1:3,9:12:89:321,0,89
12    110974877    .    C    T    1177.84    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.363;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.834;MQ=59.31;MQ0=0;MQRankSum=-0.657;QD=11.66;ReadPosRankSum=0.748;SNPEFF_AMINO_ACID_CHANGE=V294I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_110969120_110974900;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPTC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354300    GT:AD:DP:GQ:PL    0/1:54,46:100:99:1208,0,1678
12    110974890    rs10849900    T    C    947.30    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.378;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.24;MQ0=0;MQRankSum=-0.294;QD=10.41;ReadPosRankSum=1.699;SNPEFF_AMINO_ACID_CHANGE=P289;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_110969120_110974900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPTC7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354300    GT:AD:DP:GQ:PL    0/1:51,40:91:99:977,0,1729
12    110975675    rs6606689    T    C    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPTC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354300    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    111168743    rs10774604    C    T    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1CC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551690    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    111290871    rs886132    G    C    120.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308208    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
12    111296332    rs4766432    T    C    358.13    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=19;Dels=0.0;FS=6.245;HRun=0;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;MQRankSum=0.091;QD=18.85;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308208    GT:AD:DP:GQ:PL    0/1:7,11:19:99:388,0,185
12    111321695    .    C    T    184.47    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=20.5;ReadPosRankSum=0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550317    GT:AD:DP:GQ:PL    0/1:2,7:9:58.91:214,0,59
12    111336560    rs11610779    A    T    30.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=6.04;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308208    GT:AD:DP:GQ:PL    0/1:3,2:5:60.21:60,0,101
12    111342558    rs34300256    G    T    883.37    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.217;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9312;MQ=59.19;MQ0=0;MQRankSum=-1.191;QD=14.02;ReadPosRankSum=-0.137;SNPEFF_AMINO_ACID_CHANGE=V424;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_111342392_111342595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552694    GT:AD:DP:GQ:PL    0/1:31,32:63:99:913,0,942
12    111342722    rs11065762    T    C    121.51    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=11.05;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308208    GT:AD:DP:GQ:PL    0/1:6,5:11:99:152,0,171
12    111345411    rs67912779    C    T    75    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.33;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308208    GT:AD:DP:GQ:PL    0/1:5,4:9:99:105,0,132
12    111350999    rs2233260    G    A    989    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.715;DB;DP=65;Dels=0.0;FS=1.019;HRun=0;HaplotypeScore=0.0;MQ=59.98;MQ0=0;MQRankSum=0.249;QD=15.22;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228841    GT:AD:DP:GQ:PL    0/1:31,34:65:99:1019,0,907
12    111351029    rs3833910    TC    T    905.98    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=6.191;DB;DP=61;FS=0.995;HRun=5;HaplotypeScore=239.8588;IndelType=D;MQ=60.1;MQ0=0;MQRankSum=-1.137;QD=14.85;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228841    GT:AD:DP:GQ:PL    0/1:28,33:61:99:945,0,886
12    111375170    rs1056618    A    G    260.66    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.764;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7781;MQ=60.0;MQ0=0;MQRankSum=-0.31;QD=8.41;ReadPosRankSum=-0.516;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP1-46F2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331096    GT:AD:DP:GQ:PL    0/1:20,11:31:99:291,0,656
12    111375172    rs1056620    C    T    220.09    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.539;DB;DP=32;Dels=0.0;FS=3.315;HRun=0;HaplotypeScore=1.7781;MQ=60.0;MQ0=0;MQRankSum=0.99;QD=6.88;ReadPosRankSum=-1.549;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP1-46F2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331096    GT:AD:DP:GQ:PL    0/1:19,11:32:99:250,0,632
12    111786082    rs6490073    G    C    2811.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=31.95;SNPEFF_AMINO_ACID_CHANGE=V1472L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_111785328_111788358;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261726    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2845,211,0
12    111800258    rs3809272    G    A    539.87    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.069;DB;DP=22;Dels=0.0;FS=2.645;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.479;QD=24.54;ReadPosRankSum=0.995;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM109A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547710    GT:AD:DP:GQ:PL    0/1:6,16:22:99:570,0,128
12    111884608    rs3184504    T    C    105.64    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.357;QD=6.21;ReadPosRankSum=-2.764;SNPEFF_AMINO_ACID_CHANGE=W262R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_111884557_111884658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341259    GT:AD:DP:GQ:PL    0/1:11,6:17:99:136,0,385
12    111894072    rs2073950    C    T    503.44    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.363;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.36;ReadPosRankSum=0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341259    GT:AD:DP:GQ:PL    0/1:11,15:26:99:533,0,327
12    111895203    rs2301622    C    G    151.28    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=8.9;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377617    GT:AD:DP:GQ:PL    0/1:11,6:17:99:181,0,361
12    111907857    .    A    T    573.23    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=17.37;ReadPosRankSum=-0.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551755    GT:AD:DP:GQ:PL    0/1:14,19:33:99:603,0,499
12    111923455    rs17805591    G    A    336.73    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=22.45;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492467    GT:AD:DP:GQ:PL    0/1:4,10:15:76.88:367,0,77
12    111956226    rs117851901    T    C    1023.94    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.924;DB;DP=63;Dels=0.0;FS=11.756;HRun=0;HaplotypeScore=1.8288;MQ=59.63;MQ0=0;MQRankSum=0.826;QD=16.25;ReadPosRankSum=1.138;SNPEFF_AMINO_ACID_CHANGE=N202S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_111956053_111956231;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535949    GT:AD:DP:GQ:PL    0/1:25,38:63:99:1054,0,740
12    111989979    rs848132    C    A    131.36    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=11.94;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377617    GT:AD:DP:GQ:PL    0/1:6,5:11:99:161,0,176
12    112036797    rs4098854    C    T    93.37    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=1.38;QD=13.34;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Q174;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_112036588_112037480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377617    GT:AD:DP:GQ:PL    0/1:2,5:7:52.36:123,0,52
12    112036929    rs695872    G    A    58.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.57;SNPEFF_AMINO_ACID_CHANGE=R130;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_112036588_112037480;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377617    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:91,9,0
12    112230036    rs4646777    G    A    178.82    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=16.26;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551906    GT:AD:DP:GQ:PL    0/1:5,6:11:99:209,0,148
12    112235783    rs4646778    C    A    74.52    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=14.9;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261733    GT:AD:DP:GQ:PL    0/1:1,4:5:28.61:105,0,29
12    112306512    rs75586211    C    CT    33.88    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=15;FS=0.0;HRun=14;HaplotypeScore=128.4056;IndelType=I;MQ=49.96;MQ0=0;MQRankSum=-1.398;QD=2.26;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202788    GT:AD:DP:GQ:PL    0/1:10,5:15:72.91:73,0,102
12    112323582    rs1981517    A    G    137.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.43;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202788    GT:AD:DP:GQ:PL    0/1:6,6:12:99:167,0,214
12    112326123    rs2269801    T    C    134.93    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=11.24;ReadPosRankSum=1.134;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_112325382_112326422;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547067    GT:AD:DP:GQ:PL    0/1:7,5:12:99:165,0,207
12    112326138    rs2269802    A    G    166.90    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.515;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=7.59;ReadPosRankSum=1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202788    GT:AD:DP:GQ:PL    0/1:14,8:22:99:197,0,489
12    112326145    rs2269803    T    C    217.74    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.031;QD=9.07;ReadPosRankSum=1.745;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_112325382_112326422;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547067    GT:AD:DP:GQ:PL    0/1:16,8:24:99:248,0,543
12    112328230    rs6489819    C    A    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKAPK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552111    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
12    112375990    rs3752630    A    C    557.67    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=0.204;DB;DP=37;Dels=0.0;FS=1.321;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.548;QD=15.07;ReadPosRankSum=-0.141;SNPEFF_AMINO_ACID_CHANGE=C114G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_112375965_112376014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM116;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550037    GT:AD:DP:GQ:PL    0/1:14,23:37:99:588,0,348
12    112376157    rs3752631    A    G    150.41    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549425    GT:AD:DP:GQ:PL    0/1:1,5:6:23.17:180,0,23
12    112429469    rs12423126    C    G    433.39    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.794;DB;DP=39;Dels=0.0;FS=3.757;HRun=1;HaplotypeScore=0.9469;MQ=59.41;MQ0=0;MQRankSum=-0.665;QD=11.11;ReadPosRankSum=-1.907;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546962    GT:AD:DP:GQ:PL    0/1:22,17:39:99:463,0,810
12    112441688    rs7313773    T    C    1121.17    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.719;DB;DP=74;Dels=0.0;FS=4.059;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.411;QD=15.15;ReadPosRankSum=0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354825    GT:AD:DP:GQ:PL    0/1:38,36:74:99:1151,0,1246
12    112443017    rs10849992    C    T    575.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.063;QD=17.45;ReadPosRankSum=0.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354825    GT:AD:DP:GQ:PL    0/1:11,22:33:99:606,0,337
12    112450754    rs11066128    T    C    118.92    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.369;QD=9.15;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354825    GT:AD:DP:GQ:PL    0/1:7,6:13:99:149,0,218
12    112481732    .    AT    A    36.17    QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=0.2;DP=39;FS=3.882;HRun=17;HaplotypeScore=235.5027;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=-0.267;QD=0.93;ReadPosRankSum=1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261745    GT:AD:DP:GQ:PL    0/1:27,10:39:75.20:75,0,236
12    112515912    rs74636821    T    C    151.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.215;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.637;QD=10.11;ReadPosRankSum=-2.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261745    GT:AD:DP:GQ:PL    0/1:8,7:15:99:182,0,287
12    112580071    rs7970397    C    T    515.10    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=41;Dels=0.0;FS=1.421;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.055;QD=12.56;ReadPosRankSum=-2.435;SNPEFF_AMINO_ACID_CHANGE=G274;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_112579893_112580099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAFD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257604    GT:AD:DP:GQ:PL    0/1:17,24:41:99:545,0,510
12    112608312    rs3215348    TCCC    T    724.79    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=3.344;DB;DP=46;FS=1.67;HRun=6;HaplotypeScore=218.1811;IndelType=D;MQ=56.61;MQ0=0;MQRankSum=-0.954;QD=15.76;ReadPosRankSum=-0.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548588    GT:AD:DP:GQ:PL    0/1:28,18:46:99:764,0,1558
12    112610714    rs11066188    G    A    319.53    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.271;QD=16.82;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377560    GT:AD:DP:GQ:PL    0/1:8,11:19:99:350,0,265
12    112621886    rs3741993    C    T    604.50    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.718;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.859;QD=15.11;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377560    GT:AD:DP:GQ:PL    0/1:22,18:40:99:634,0,636
12    112638688    rs60466020    CGT    C    478.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=188.1182;IndelType=D;MQ=58.55;MQ0=0;QD=14.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377560    GT:AD:DP:GQ:PL    1/1:18,15:33:47.95:520,48,0
12    112638692    rs60619319    T    C    122.19    HaplotypeScoreFilter13    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.906;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.2511;MQ=58.5;MQ0=0;MQRankSum=-0.638;QD=3.82;ReadPosRankSum=-2.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377560    GT:AD:DP:GQ:PL    0/1:25,7:32:99:152,0,282
12    112641707    rs12423268    G    A    136.32    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8295;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.04;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377560    GT:AD:DP:GQ:PL    0/1:2,5:8:59.74:166,0,60
12    112650058    rs10850014    A    G    35.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=8.94;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552437    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:66,0,33
12    112667675    rs1005902    T    G    696.45    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=3.616;DB;DP=53;Dels=0.0;FS=2.419;HRun=0;HaplotypeScore=0.734;MQ=59.56;MQ0=0;MQRankSum=-0.44;QD=13.14;ReadPosRankSum=0.763;SNPEFF_AMINO_ACID_CHANGE=R1694;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_112667502_112667684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430131    GT:AD:DP:GQ:PL    0/1:30,23:53:99:726,0,1013
12    112668343    rs4767522    T    C    367.86    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.191;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=18.39;ReadPosRankSum=0.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377560    GT:AD:DP:GQ:PL    0/1:9,11:20:99:398,0,290
12    112668755    rs12579851    G    A    391.35    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.584;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.571;QD=15.65;ReadPosRankSum=-0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377560    GT:AD:DP:GQ:PL    0/1:12,13:25:99:421,0,435
12    112685781    .    T    TAC    989.99    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DP=71;FS=1.795;HRun=0;HaplotypeScore=319.1579;IndelType=I;MQ=58.89;MQ0=0;MQRankSum=0.079;QD=13.94;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311694    GT:AD:DP:GQ:PL    0/1:42,24:71:99:1029,0,852
12    112708331    rs10850023    T    C    938.17    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.042;DB;DP=59;Dels=0.0;FS=3.443;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=-1.496;QD=15.9;ReadPosRankSum=1.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377560    GT:AD:DP:GQ:PL    0/1:28,31:59:99:968,0,868
12    112843363    rs2301723    G    A    32.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=4;HaplotypeScore=0.9999;MQ=52.03;MQ0=0;MQRankSum=-0.358;QD=6.42;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546368    GT:AD:DP:GQ:PL    0/1:3,2:5:62.12:62,0,94
12    112843998    rs2233861    A    T    101.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=10.12;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546368    GT:AD:DP:GQ:PL    0/1:6,4:10:99:131,0,222
12    113285331    rs1029483    C    T    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389385    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    113313470    rs2891411    C    T    449.01    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.279;DB;DP=33;Dels=0.0;FS=3.467;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=13.61;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389385    GT:AD:DP:GQ:PL    0/1:16,17:33:99:479,0,452
12    113319471    rs886476    G    A    640.37    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=4.903;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.28;MQ0=0;MQRankSum=-2.374;QD=16.42;ReadPosRankSum=2.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389385    GT:AD:DP:GQ:PL    0/1:20,19:39:99:670,0,535
12    113319600    rs2240194    C    T    1372.97    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=4.669;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9767;MQ=59.55;MQ0=0;MQRankSum=1.808;QD=16.54;ReadPosRankSum=-1.128;SNPEFF_AMINO_ACID_CHANGE=N376;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113319577_113319651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447659    GT:AD:DP:GQ:PL    0/1:38,45:83:99:1403,0,1027
12    113319778    rs10850088    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389385    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    113325396    rs7979081    T    C    149.60    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.62;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552755    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,140
12    113325460    rs7979186    T    C    502.13    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.568;DB;DP=32;Dels=0.0;FS=3.291;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.491;QD=15.69;ReadPosRankSum=-2.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552755    GT:AD:DP:GQ:PL    0/1:15,17:32:99:532,0,515
12    113325629    rs4141253    T    C    1872.02    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=148;Dels=0.0;FS=3.98;HRun=0;HaplotypeScore=3.2563;MQ=59.72;MQ0=0;MQRankSum=0.542;QD=12.65;ReadPosRankSum=0.437;SNPEFF_AMINO_ACID_CHANGE=F140;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113325602_113325728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000549913    GT:AD:DP:GQ:PL    0/1:80,68:148:99:1902,0,2353
12    113328777    rs140115309    G    A    58.22    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.377;QD=5.29;ReadPosRankSum=-0.978;SNPEFF_AMINO_ACID_CHANGE=A234T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113328654_113328808;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000549913    GT:AD:DP:GQ:PL    0/1:8,3:11:88.21:88,0,280
12    113333414    .    G    T    52.84    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546687    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
12    113345167    rs7956880    A    C    297.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202917    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:330,24,0
12    113348661    rs34137742    C    T    66.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553185    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:96,0,30
12    113348870    rs1131454    G    A    1479.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.89;SNPEFF_AMINO_ACID_CHANGE=G158S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113348856_113349040;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550689    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1513,111,0
12    113357193    rs10774671    G    A    1630.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000202917    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1664,126,0
12    113357209    rs1131476    G    A    1598.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=A352T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113357194_113357708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000202917    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1631,123,0
12    113357237    rs1051042    G    C    1925.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=R361T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113357194_113357708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000202917    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1959,153,0
12    113357442    rs2660    G    A    411.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=G397R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113357292_113357680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445409    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:444,36,0
12    113369644    rs7968145    C    T    1674.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7074;MQ=60.38;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377508    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1707,126,0
12    113369715    rs11352835    TA    T    2790.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.0;HRun=1;HaplotypeScore=450.47;IndelType=D;MQ=60.73;MQ0=0;QD=38.76;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_113369683_113369990;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000551241    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2833,205,0
12    113369759    rs7967461    G    C    1863.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=27.0;SNPEFF_AMINO_ACID_CHANGE=G371R;SNPEFF_CODON_CHANGE=Gga/Cga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113369720_113369991;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377508    GT:AD:DP:GQ:PL    1/1:1,68:69:99:1896,162,0
12    113376320    rs3815178    C    T    809.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546638    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:842,63,0
12    113376331    rs1859331    C    A    734.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546638    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:767,57,0
12    113376388    rs1859330    G    A    631.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=30.06;SNPEFF_AMINO_ACID_CHANGE=R18K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113376157_113376512;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000228928    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:664,51,0
12    113376452    rs1859329    C    T    422.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.49;SNPEFF_AMINO_ACID_CHANGE=A39;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113376157_113376512;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000228928    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:455,36,0
12    113379123    rs7311182    T    C    93.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228928    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
12    113385918    rs7961861    C    T    400.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.968;DB;DP=33;Dels=0.0;FS=3.634;HRun=0;HaplotypeScore=0.9992;MQ=58.59;MQ0=0;MQRankSum=-0.534;QD=12.13;ReadPosRankSum=0.494;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546638    GT:AD:DP:GQ:PL    0/1:16,16:33:99:430,0,450
12    113386616    rs34647135    T    C    568.15    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.004;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.15;MQ=59.45;MQ0=0;MQRankSum=0.456;QD=13.53;ReadPosRankSum=-0.743;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546638    GT:AD:DP:GQ:PL    0/1:22,20:42:99:598,0,662
12    113386950    rs2285932    T    C    1875.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=27.99;SNPEFF_AMINO_ACID_CHANGE=I437;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113386834_113387010;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323881    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1909,156,0
12    113387034    rs3214199    A    AG    205.84    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=24;FS=7.858;HRun=6;HaplotypeScore=67.622;IndelType=I;MQ=59.22;MQ0=0;MQRankSum=-1.528;QD=8.58;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546638    GT:AD:DP:GQ:PL    0/1:16,8:24:99:245,0,280
12    113398919    rs2072136    G    A    807.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.32;DB;DP=71;Dels=0.0;FS=6.619;HRun=1;HaplotypeScore=2.7231;MQ=60.0;MQ0=0;MQRankSum=-0.941;QD=11.38;ReadPosRankSum=0.402;SNPEFF_AMINO_ACID_CHANGE=S566;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113398876_113399051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323881    GT:AD:DP:GQ:PL    0/1:42,28:71:99:838,0,1173
12    113400825    rs67947098    AC    A    1121.67    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=6.673;DB;DP=65;FS=0.0;HRun=1;HaplotypeScore=316.208;IndelType=D;MQ=64.19;MQ0=0;MQRankSum=6.36;QD=17.26;ReadPosRankSum=0.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546800    GT:AD:DP:GQ:PL    0/1:30,35:65:99:1161,0,1103
12    113401199    rs45603631    G    A    78.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=13.16;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=A721;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113401118_113401262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323881    GT:AD:DP:GQ:PL    0/1:2,4:6:67.83:109,0,68
12    113402297    rs11066461    C    T    605.62    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=5.16;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=15.94;ReadPosRankSum=-0.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546800    GT:AD:DP:GQ:PL    0/1:20,18:38:99:636,0,569
12    113405181    rs1557866    A    C    708.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228928    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:742,57,0
12    113406190    rs3937435    A    G    111.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.92;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228928    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,103
12    113406196    rs3937434    A    G    257.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228928    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
12    113425154    rs1293767    C    G    692.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=S163R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113424843_113426610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449768    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:725,57,0
12    113435109    rs1293757    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342315    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
12    113435293    rs1293756    C    A    500.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342315    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:533,45,0
12    113435450    rs1293755    A    T    1212.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=V176;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113435325_113435560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552756    GT:AD:DP:GQ:PL    1/1:0,35:35:90.30:1246,90,0
12    113444024    rs1293748    T    C    70.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548941    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:103,9,0
12    113444418    rs929291    T    C    3417.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=59.15;MQ0=0;QD=32.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548941    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3418,268,0
12    113445768    rs1293746    G    A    4637.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.584;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6652;MQ=59.84;MQ0=0;MQRankSum=-0.47;QD=32.43;ReadPosRankSum=-1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548941    GT:AD:DP:GQ:PL    1/1:2,141:143:99:4637,307,0
12    113446727    rs1293744    G    A    247.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548941    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
12    113447199    rs34600329    GC    G    272.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.134;DB;DP=22;FS=0.0;HRun=5;HaplotypeScore=50.9364;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=12.38;ReadPosRankSum=-1.936;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548941    GT:AD:DP:GQ:PL    0/1:11,11:22:99:311,0,347
12    113448288    rs15895    A    G    5943.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.71;MQ0=0;QD=37.38;SNPEFF_AMINO_ACID_CHANGE=*720W;SNPEFF_CODON_CHANGE=tAg/tGg;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_12_113448179_113449528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OAS2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000342315    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5943,445,0
12    113496313    rs1732785    C    T    199.97    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=55.21;MQ0=0;MQRankSum=-0.124;QD=10.0;ReadPosRankSum=-1.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548759    GT:AD:DP:GQ:PL    0/1:6,14:20:99:230,0,161
12    113531295    rs1625170    T    C    32.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.85;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257600    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:63,0,33
12    113531711    rs73205298    C    G    39.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=6.51;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546530    GT:AD:DP:GQ:PL    0/1:3,3:6:69.03:69,0,106
12    113532617    rs12427377    A    G    177.51    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=11.83;ReadPosRankSum=-0.752;SNPEFF_AMINO_ACID_CHANGE=R417;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113532594_113532752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257600    GT:AD:DP:GQ:PL    0/1:8,7:15:99:208,0,285
12    113532885    rs12426056    C    T    149.72    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.875;DB;DP=24;Dels=0.0;FS=1.978;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.155;QD=6.24;ReadPosRankSum=2.345;SNPEFF_AMINO_ACID_CHANGE=Y475;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113532847_113533008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257600    GT:AD:DP:GQ:PL    0/1:17,7:24:99:180,0,531
12    113533050    rs2243397    C    T    676.74    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.76;MQ0=0;MQRankSum=0.45;QD=19.9;ReadPosRankSum=0.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553140    GT:AD:DP:GQ:PL    0/1:11,23:34:99:707,0,306
12    113533124    rs2243396    C    T    698.35    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.647;DB;DP=54;Dels=0.0;FS=2.305;HRun=1;HaplotypeScore=0.5784;MQ=59.65;MQ0=0;MQRankSum=1.907;QD=12.93;ReadPosRankSum=1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553140    GT:AD:DP:GQ:PL    0/1:31,23:54:99:728,0,924
12    113533346    rs2701622    G    A    70.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.69;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553140    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:101,0,30
12    113537562    rs12422636    C    T    159.47    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=19.93;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257600    GT:AD:DP:GQ:PL    0/1:2,6:8:58.81:189,0,59
12    113537773    rs12422659    C    T    304.05    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.769;DB;DP=23;Dels=0.0;FS=1.76;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.523;QD=13.22;ReadPosRankSum=0.646;SNPEFF_AMINO_ACID_CHANGE=Q764;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113537313_113537873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446861    GT:AD:DP:GQ:PL    0/1:12,11:23:99:334,0,364
12    113538415    rs73207006    A    T    279.82    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.905;DB;DP=16;Dels=0.0;FS=5.825;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=17.49;ReadPosRankSum=-0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257600    GT:AD:DP:GQ:PL    0/1:7,9:16:99:310,0,244
12    113539822    rs1674101    A    G    1604.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5778;MQ=59.11;MQ0=0;QD=30.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257600    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1638,129,0
12    113539829    rs73207007    C    T    656.78    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.238;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=59.05;MQ0=0;MQRankSum=-1.686;QD=13.4;ReadPosRankSum=-0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257600    GT:AD:DP:GQ:PL    0/1:23,26:49:99:687,0,675
12    113541904    rs12427427    C    A    229.35    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=20.85;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548972    GT:AD:DP:GQ:PL    0/1:3,8:11:80.05:259,0,80
12    113541940    rs1613480    C    T    58.52    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=5.32;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548972    GT:AD:DP:GQ:PL    0/1:8,3:11:88.51:89,0,222
12    113543828    rs1732771    G    A    83.25    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.81;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548972    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:113,0,30
12    113544874    rs2468355    C    T    685.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=57.39;MQ0=0;MQRankSum=-2.351;QD=12.7;ReadPosRankSum=-0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548972    GT:AD:DP:GQ:PL    0/1:27,27:54:99:716,0,774
12    113545165    rs1807335    T    C    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
12    113545787    rs936387    A    G    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    113546160    rs7971164    G    T    36.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    0/1:2,2:4:66.70:67,0,73
12    113553408    rs1284878    C    T    143.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=0.783;QD=6.82;ReadPosRankSum=-0.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547810    GT:AD:DP:GQ:PL    0/1:14,7:21:99:173,0,478
12    113553481    rs1284879    C    T    332.88    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.305;DB;DP=29;Dels=0.0;FS=9.558;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.189;QD=11.48;ReadPosRankSum=-2.548;SNPEFF_AMINO_ACID_CHANGE=R321H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113553440_113553593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    0/1:15,14:29:99:363,0,349
12    113553674    rs146632065    AG    A    742.74    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=3.597;DB;DP=59;FS=1.115;HRun=5;HaplotypeScore=168.9078;IndelType=D;MQ=60.16;MQ0=0;MQRankSum=1.614;QD=12.59;ReadPosRankSum=-1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    0/1:30,29:59:99:782,0,978
12    113554946    rs34456143    G    A    133.56    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.355;QD=7.86;ReadPosRankSum=1.473;SNPEFF_AMINO_ACID_CHANGE=T221;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113554878_113554966;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    0/1:9,8:17:99:164,0,262
12    113556805    rs73207024    C    G    876.45    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.889;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;MQRankSum=-1.818;QD=15.38;ReadPosRankSum=0.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    0/1:24,33:57:99:906,0,753
12    113559447    rs73207027    A    G    119.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=18;Dels=0.0;FS=2.884;HRun=1;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;MQRankSum=1.318;QD=6.65;ReadPosRankSum=-0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    0/1:12,6:18:99:150,0,375
12    113565933    rs34598602    G    A    2614.95    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=187;DS;Dels=0.0;FS=0.665;HRun=0;HaplotypeScore=6.4016;MQ=58.91;MQ0=0;MQRankSum=0.066;QD=13.98;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=T58M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_113565870_113565983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    0/1:86,98:187:99:2645,0,2343
12    113568797    rs7976407    A    G    252.77    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.722;QD=14.87;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261729    GT:AD:DP:GQ:PL    0/1:8,9:17:99:283,0,237
12    113605769    rs117291153    C    T    1862.50    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=3.922;DB;DP=132;Dels=0.0;FS=1.405;HRun=0;HaplotypeScore=1.81;MQ=59.83;MQ0=0;MQRankSum=1.422;QD=14.11;ReadPosRankSum=0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306014    GT:AD:DP:GQ:PL    0/1:63,69:132:99:1892,0,1681
12    113710704    rs2303618    T    C    70.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.76;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548465    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,101
12    113711264    rs2303617    A    G    63.74    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.25;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.2854;MQ=58.84;MQ0=0;MQRankSum=0.85;QD=3.19;ReadPosRankSum=1.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548465    GT:AD:DP:GQ:PL    0/1:15,5:20:93.73:94,0,538
12    113715251    rs7955036    T    G    242.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=17.35;ReadPosRankSum=1.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335509    GT:AD:DP:GQ:PL    0/1:6,8:14:99:273,0,163
12    113715891    rs3217307    T    TCCCA    447.21    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=33.7492;IndelType=I;MQ=53.87;MQ0=0;MQRankSum=-0.895;QD=44.72;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335509    GT:AD:DP:GQ:PL    0/1:4,6:10:99:486,0,141
12    113730882    .    A    G    428.86    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.243;QD=13.0;ReadPosRankSum=-0.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428632    GT:AD:DP:GQ:PL    0/1:17,16:33:99:459,0,560
12    113731312    rs117462249    G    A    64.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428632    GT:AD:DP:GQ:PL    0/1:2,3:5:51.29:94,0,51
12    113909057    rs3803074    A    C    182.94    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.63;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261731    GT:AD:DP:GQ:PL    0/1:5,6:11:78.58:213,0,79
12    114261053    rs11066773    G    A    349.82    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=26;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=1.9907;MQ=60.0;MQ0=0;MQRankSum=-0.026;QD=13.45;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=S953;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_114259862_114261126;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    0/1:12,14:26:99:380,0,279
12    114261237    rs2059598    A    C    88.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=12.69;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    0/1:3,4:7:92.41:119,0,92
12    114261286    rs930004    T    G    61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:93,9,0
12    114296745    rs10744803    C    T    519.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:553,42,0
12    114356357    rs10774721    T    C    291.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.47;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:325,27,0
12    114362483    rs3782456    C    T    3014.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,82:82:99:3048,220,0
12    114362621    rs1458713    A    G    1322.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1355,99,0
12    114362632    rs3782458    A    G    1055.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,29:29:81.22:1088,81,0
12    114362699    rs10774723    G    T    104.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=11.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,9:9:14.98:137,15,0
12    114377885    rs2290790    G    C    1204.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=29.39;SNPEFF_AMINO_ACID_CHANGE=T606;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_114377765_114377965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1238,102,0
12    114377899    rs7299217    G    C    1151.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.45;MQ0=0;QD=27.42;SNPEFF_AMINO_ACID_CHANGE=Q602E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_114377765_114377965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1185,99,0
12    114379991    rs2290791    T    C    75.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
12    114383559    rs898081    A    G    268.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:302,24,0
12    114384952    rs3782460    C    T    87.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
12    114392971    rs71443069    C    CGGT    1481.09    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.535;DB;DP=55;FS=0.0;HRun=0;HaplotypeScore=244.673;IndelType=I;MQ=59.44;MQ0=0;MQRankSum=-0.183;QD=26.93;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=T295TP;SNPEFF_CODON_CHANGE=acc/acACCc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_12_114392936_114393016;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261741    GT:AD:DP:GQ:PL    0/1:30,25:55:99:1520,0,1167
12    114393028    rs1037747    C    G    1221.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=37.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546876    GT:AD:DP:GQ:PL    1/1:0,33:33:93.25:1255,93,0
12    114395442    rs4767173    C    T    207.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546876    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:240,21,0
12    114395571    rs2290786    C    T    2110.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546876    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2143,166,0
12    114794057    rs2113433    T    G    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310346    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
12    114823187    rs2277377    G    T    332.99    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.176;QD=15.86;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310346    GT:AD:DP:GQ:PL    0/1:10,11:21:99:363,0,316
12    114832510    rs2236017    C    A    1026.60    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.19;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=59.64;MQ0=0;MQRankSum=-1.693;QD=16.04;ReadPosRankSum=-0.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552726    GT:AD:DP:GQ:PL    0/1:33,31:64:99:1057,0,1123
12    114841508    rs192781521    C    T    452.67    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=47;Dels=0.0;FS=4.368;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.76;QD=9.63;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310346    GT:AD:DP:GQ:PL    0/1:26,21:47:99:483,0,846
12    115121189    rs2242442    G    A    33.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.08;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552054    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:63,0,32
12    116403920    rs3088260    G    A    1701.92    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.446;DB;DP=140;Dels=0.0;FS=7.726;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=0.873;QD=12.16;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=P2118;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_116403887_116404048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED13L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281928    GT:AD:DP:GQ:PL    0/1:72,68:140:99:1732,0,2080
12    116443463    rs10774844    A    G    70.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED13L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549755    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:103,9,0
12    116445447    .    AG    A    163.20    PASS    AB=0.931;AC=1;AF=0.50;AN=2;BaseQRankSum=4.308;DP=67;FS=27.582;HRun=1;HaplotypeScore=501.7717;IndelType=D;MQ=45.65;MQ0=0;MQRankSum=-3.388;QD=2.44;ReadPosRankSum=-4.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED13L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281928    GT:AD:DP:GQ:PL    0/1:61,5:67:99:202,0,1243
12    116586414    rs10549054    CTA    C    536.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DB;DP=20;FS=4.771;HRun=0;HaplotypeScore=80.8517;IndelType=D;MQ=58.22;MQ0=0;MQRankSum=-1.349;QD=26.83;ReadPosRankSum=-1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED13L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281928    GT:AD:DP:GQ:PL    1/1:3,17:20:27.23:579,27,0
12    116675052    rs61935859    T    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED13L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548743    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
12    117013730    rs7303998    G    C    202.05    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.854;DB;DP=44;Dels=0.0;FS=5.26;HRun=1;HaplotypeScore=0.734;MQ=58.18;MQ0=0;MQRankSum=-0.265;QD=4.59;ReadPosRankSum=-0.543;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_12_117013647_117014425;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1LC3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306985    GT:AD:DP:GQ:PL    0/1:32,12:44:99:232,0,915
12    117014131    rs77605645    G    GA    361.46    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.348;DB;DP=32;FS=1.484;HRun=6;HaplotypeScore=68.8214;IndelType=I;MQ=48.64;MQ0=0;MQRankSum=-1.507;QD=10.33;ReadPosRankSum=-1.674;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1LC3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306985    GT:AD:DP:GQ:PL    0/1:20,15:32:99:400,0,430
12    117175375    rs4275719    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261318    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
12    117217141    rs4767452    T    C    2770.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=31.49;SNPEFF_AMINO_ACID_CHANGE=A290;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_117217000_117217153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257575    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2804,235,0
12    117286981    rs4767461    C    T    161.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257575    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
12    117287112    rs73220476    C    T    109.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.073;QD=9.12;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257575    GT:AD:DP:GQ:PL    0/1:6,6:12:99:139,0,213
12    117289613    rs903775    G    C    2269.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=G277A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_117289493_117290750;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319176    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2302,172,0
12    117290601    rs903772    T    C    1072.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257575    GT:AD:DP:GQ:PL    1/1:0,34:34:96.24:1106,96,0
12    117383320    rs4076700    G    A    707.12    PASS    AB=0.306;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=36;Dels=0.0;FS=3.576;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.58;QD=19.64;ReadPosRankSum=-0.927;SNPEFF_AMINO_ACID_CHANGE=R126Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_117383169_117383333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455858    GT:AD:DP:GQ:PL    0/1:11,25:36:99:737,0,330
12    117402755    rs6490101    T    C    516.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309909    GT:AD:DP:GQ:PL    1/1:0,18:18:51.11:550,51,0
12    117423264    rs7131746    G    A    421.91    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.083;DB;DP=36;Dels=0.0;FS=4.218;HRun=0;HaplotypeScore=1.5616;MQ=59.36;MQ0=0;MQRankSum=-1.383;QD=11.72;ReadPosRankSum=1.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551773    GT:AD:DP:GQ:PL    0/1:21,15:36:99:452,0,606
12    117465714    rs10507278    G    C    145.89    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=20.84;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309909    GT:AD:DP:GQ:PL    0/1:2,5:7:46.62:176,0,47
12    117465857    rs4529958    T    C    1109.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_AMINO_ACID_CHANGE=Y493;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_117465833_117468953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455858    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1142,87,0
12    117465981    rs2291916    T    C    384.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.578;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.298;QD=16.03;ReadPosRankSum=-0.417;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309909    GT:AD:DP:GQ:PL    0/1:9,15:24:99:415,0,307
12    117476896    rs9308    C    A    112.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.42;ReadPosRankSum=0.731;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TESC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335209    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:142,0,25
12    117477082    rs118025365    G    A    56.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.33;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TESC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335209    GT:AD:DP:GQ:PL    0/1:6,3:9:86.97:87,0,220
12    117477104    rs2270794    C    T    66.38    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.3;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TESC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335209    GT:AD:DP:GQ:PL    0/1:5,3:8:96.37:96,0,179
12    117494543    rs2173654    A    G    243.55    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=12.82;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TESC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335209    GT:AD:DP:GQ:PL    0/1:9,10:19:99:274,0,283
12    117494587    rs2173653    G    C    377.60    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=35;Dels=0.0;FS=1.377;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.944;QD=10.79;ReadPosRankSum=2.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TESC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335209    GT:AD:DP:GQ:PL    0/1:19,16:35:99:408,0,599
12    117595978    rs2279766    A    C    526.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.627;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.116;QD=18.79;ReadPosRankSum=1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257563    GT:AD:DP:GQ:PL    0/1:12,16:28:99:556,0,404
12    117603561    rs4767511    G    A    104.80    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.64;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257563    GT:AD:DP:GQ:PL    0/1:4,5:9:99:135,0,124
12    117612734    rs4767513    T    C    175.78    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=14.65;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257563    GT:AD:DP:GQ:PL    0/1:5,7:12:99:206,0,154
12    117624418    rs4767516    T    C    350.60    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.341;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.192;QD=14.02;ReadPosRankSum=-0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257563    GT:AD:DP:GQ:PL    0/1:14,11:25:99:381,0,480
12    117681353    rs34385734    A    ACCAT    345.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=114.8091;IndelType=I;MQ=60.38;MQ0=0;QD=13.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317775    GT:AD:DP:GQ:PL    1/1:19,5:25:18.06:388,18,0
12    117701714    rs2293054    A    G    1631.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_AMINO_ACID_CHANGE=I629;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_117701694_117701779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397605    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1665,129,0
12    117705774    rs3741480    C    T    311.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317775    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:344,27,0
12    117709991    rs4767526    T    C    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317775    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
12    117715620    rs2293052    G    A    132.52    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=14.72;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317775    GT:AD:DP:GQ:PL    0/1:4,5:9:99:163,0,110
12    117715724    rs3215291    AC    A    848.35    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=5.902;DB;DP=64;FS=1.143;HRun=3;HaplotypeScore=174.4291;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=0.133;QD=13.26;ReadPosRankSum=-1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317775    GT:AD:DP:GQ:PL    0/1:34,30:64:99:887,0,1152
12    117718473    rs11282297    G    GGGTAAAA    2059.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=90.9455;IndelType=I;MQ=32.66;MQ0=0;QD=114.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317775    GT:AD:DP:GQ:PL    1/1:8,8:18:54.19:2101,54,0
12    117718686    rs2293051    G    C    60.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=7.53;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317775    GT:AD:DP:GQ:PL    0/1:4,4:8:90.27:90,0,136
12    117768105    rs111326073    G    GCA    372.92    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.594;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=139.8033;IndelType=I;MQ=55.86;MQ0=0;MQRankSum=-0.425;QD=16.21;ReadPosRankSum=-0.255;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549189    GT:AD:DP:GQ:PL    0/1:14,7:23:23.49:412,0,23
12    117907449    rs12304889    T    C    554.91    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.284;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.877;QD=12.61;ReadPosRankSum=-0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    0/1:25,19:44:99:585,0,876
12    117907691    rs11068505    C    T    553.26    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.621;DB;DP=33;Dels=0.0;FS=3.038;HRun=1;HaplotypeScore=0.0;MQ=58.52;MQ0=0;MQRankSum=0.528;QD=16.77;ReadPosRankSum=1.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    0/1:14,19:33:99:583,0,423
12    117907749    .    C    CCATCC    323.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.448;DP=16;FS=0.0;HRun=0;HaplotypeScore=200.2503;IndelType=I;MQ=55.38;MQ0=0;MQRankSum=-0.772;QD=20.22;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    0/1:8,2:16:99:363,0,366
12    117907760    rs1068940    C    T    173.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;QD=21.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:207,15,0
12    118016786    rs708861    C    A    269.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:302,24,0
12    118017201    rs4767569    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    118019927    rs860113    T    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    118020115    rs11068551    G    A    773.94    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=3.122;DB;DP=67;Dels=0.0;FS=2.173;HRun=1;HaplotypeScore=1.5317;MQ=58.61;MQ0=0;MQRankSum=-0.739;QD=11.55;ReadPosRankSum=0.938;SNPEFF_AMINO_ACID_CHANGE=L104;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_118020095_118020164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    0/1:40,27:67:99:804,0,1134
12    118105513    rs11068610    C    A    136.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=11.41;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302438    GT:AD:DP:GQ:PL    0/1:6,6:12:99:167,0,193
12    118199286    rs617641    C    G    3070.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=T143;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_118198816_118199329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425217    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3103,238,0
12    118473054    rs9788041    T    C    484.25    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.149;DB;DP=39;Dels=0.0;FS=2.864;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=12.42;ReadPosRankSum=0.407;SNPEFF_AMINO_ACID_CHANGE=P303;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_118473019_118473129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315436    GT:AD:DP:GQ:PL    0/1:19,20:39:99:514,0,507
12    118480874    rs7312586    G    A    630.88    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.6;DB;DP=40;Dels=0.0;FS=6.647;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.406;QD=15.77;ReadPosRankSum=0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315436    GT:AD:DP:GQ:PL    0/1:19,21:40:99:661,0,596
12    118506186    rs67405503    A    T    1699.28    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.237;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9296;MQ=56.91;MQ0=0;MQRankSum=2.45;QD=11.72;ReadPosRankSum=0.014;SNPEFF_AMINO_ACID_CHANGE=L521;SNPEFF_CODON_CHANGE=ctT/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_118506182_118506402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    0/1:80,65:145:99:1729,0,2406
12    118506327    rs145974909    TTCC    T    2544.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.521;DB;DP=124;FS=2.704;HRun=0;HaplotypeScore=708.9651;IndelType=D;MQ=51.05;MQ0=0;MQRankSum=2.031;QD=20.52;ReadPosRankSum=0.415;SNPEFF_AMINO_ACID_CHANGE=EE473E;SNPEFF_CODON_CHANGE=gaggaa/gaa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_12_118506182_118506402;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    1/1:47,47:124:99:2587,218,0
12    118506348    .    C    T    72.77    QDFilter2    AB=0.94;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DP=116;Dels=0.0;FS=1.627;HRun=1;HaplotypeScore=2.5698;MQ=49.66;MQ0=0;MQRankSum=-2.954;QD=0.63;ReadPosRankSum=-3.316;SNPEFF_AMINO_ACID_CHANGE=E467;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_118506182_118506402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    0/1:109,7:116:99:103,0,773
12    118506575    rs11068803    T    G    103.70    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.52;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545259    GT:AD:DP:GQ:PL    0/1:4,5:9:99:134,0,127
12    118506607    rs10850953    T    G    141.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=14.19;ReadPosRankSum=1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545259    GT:AD:DP:GQ:PL    0/1:5,5:10:99:172,0,170
12    118506929    rs79927128    C    CT    191.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=25.3156;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=-1.422;QD=21.23;ReadPosRankSum=-1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545259    GT:AD:DP:GQ:PL    0/1:3,6:9:89.85:230,0,90
12    118508796    rs7135008    A    G    146.89    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=11.3;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    0/1:6,7:13:99:177,0,211
12    118509086    rs7135400    A    T    1158.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=37.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    1/1:0,31:31:87.29:1192,87,0
12    118509124    rs11613924    A    G    882.96    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.498;DB;DP=64;Dels=0.0;FS=1.789;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.585;QD=13.8;ReadPosRankSum=0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    0/1:34,30:64:99:913,0,1200
12    118509148    rs7308222    C    T    2979.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.44;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    1/1:0,82:82:99:3013,229,0
12    118509157    rs7296643    T    C    3498.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5518;MQ=59.27;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3499,265,0
12    118509191    rs7307331    G    A    4749.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=H435Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_118509164_118509274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    1/1:0,147:147:99:4749,358,0
12    118509347    rs9669474    T    C    748.72    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.996;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9142;MQ=59.69;MQ0=0;MQRankSum=-0.153;QD=10.12;ReadPosRankSum=1.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    0/1:46,28:74:99:779,0,1615
12    118511412    rs55833872    T    C    507.74    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.644;DB;DP=30;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.9665;MQ=59.23;MQ0=0;MQRankSum=1.102;QD=16.92;ReadPosRankSum=1.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359236    GT:AD:DP:GQ:PL    0/1:14,16:30:99:538,0,498
12    118533252    rs112561796    C    T    739.19    PASS    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.338;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=59.34;MQ0=0;MQRankSum=-0.373;QD=21.12;ReadPosRankSum=-0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541855    GT:AD:DP:GQ:PL    0/1:11,24:35:99:769,0,319
12    118588779    .    TG    T    192.37    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=4.037;DP=53;FS=11.83;HRun=1;HaplotypeScore=481.7703;IndelType=D;MQ=44.09;MQ0=0;MQRankSum=-1.13;QD=3.63;ReadPosRankSum=1.006;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537305    GT:AD:DP:GQ:PL    0/1:41,12:53:99:231,0,505
12    118589069    rs2249624    G    A    142.09    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;MQRankSum=0.0;QD=14.21;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392533    GT:AD:DP:GQ:PL    0/1:2,8:10:61.81:172,0,62
12    118589862    rs795484    T    C    40.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.4;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392533    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:70,0,29
12    118639139    .    G    A    760.87    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.629;DP=75;Dels=0.0;FS=12.29;HRun=0;HaplotypeScore=0.9469;MQ=59.38;MQ0=0;MQRankSum=0.34;QD=10.14;ReadPosRankSum=-0.745;SNPEFF_AMINO_ACID_CHANGE=R317W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_118639101_118639268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392533    GT:AD:DP:GQ:PL    0/1:44,31:75:99:791,0,1315
12    118650917    rs353886    C    T    60.84    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.322;QD=7.6;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359811    GT:AD:DP:GQ:PL    0/1:5,3:8:90.83:91,0,178
12    118673483    rs113638167    G    GA    120.33    PASS    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.844;DB;DP=30;FS=0.0;HRun=11;HaplotypeScore=108.6177;IndelType=I;MQ=58.18;MQ0=0;MQRankSum=-0.044;QD=4.01;ReadPosRankSum=-0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535570    GT:AD:DP:GQ:PL    0/1:20,6:30:99:159,0,130
12    118681158    rs708862    T    A    278.49    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.764;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.558;QD=16.38;ReadPosRankSum=-0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541186    GT:AD:DP:GQ:PL    0/1:6,11:17:99:308,0,162
12    118682751    rs428073    C    T    687.95    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.085;DB;DP=51;Dels=0.0;FS=2.563;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.557;QD=13.49;ReadPosRankSum=1.481;SNPEFF_AMINO_ACID_CHANGE=S47N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_118682699_118682770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392533    GT:AD:DP:GQ:PL    0/1:27,24:51:99:718,0,859
12    118684243    rs466381    A    G    132.66    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.837;DB;DP=48;Dels=0.0;FS=9.77;HRun=1;HaplotypeScore=0.0;MQ=42.07;MQ0=7;MQRankSum=-4.822;QD=2.76;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359811    GT:AD:DP:GQ:PL    0/1:28,20:48:99:163,0,839
12    118684748    rs459229    A    C    141.50    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.278;DB;DP=24;Dels=0.0;FS=4.738;HRun=0;HaplotypeScore=0.0;MQ=44.93;MQ0=4;MQRankSum=-1.278;QD=5.9;ReadPosRankSum=0.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359811    GT:AD:DP:GQ:PL    0/1:14,10:24:99:171,0,436
12    118828755    rs492939    G    A    343.52    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=27;Dels=0.0;FS=12.231;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=12.72;ReadPosRankSum=-0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUDS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397564    GT:AD:DP:GQ:PL    0/1:16,11:27:99:374,0,484
12    119563084    rs7296134    C    G    369.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267260    GT:AD:DP:GQ:PL    1/1:0,14:14:36.05:402,36,0
12    119563128    rs34183325    C    T    106.88    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.554;DB;DP=28;Dels=0.0;FS=2.634;HRun=1;HaplotypeScore=0.8321;MQ=57.48;MQ0=0;MQRankSum=-0.671;QD=3.82;ReadPosRankSum=1.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267260    GT:AD:DP:GQ:PL    0/1:22,6:28:99:137,0,713
12    119563288    rs34186549    A    AC    634.76    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=43;FS=0.0;HRun=4;HaplotypeScore=182.9039;IndelType=I;MQ=59.43;MQ0=0;MQRankSum=0.513;QD=14.76;ReadPosRankSum=-2.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267260    GT:AD:DP:GQ:PL    0/1:24,19:43:99:674,0,439
12    119563325    rs12422371    C    T    331.05    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.47;MQ0=0;MQRankSum=-1.016;QD=14.39;ReadPosRankSum=1.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267260    GT:AD:DP:GQ:PL    0/1:11,12:23:99:361,0,289
12    119568421    rs7298308    C    G    416.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.873;DB;DP=20;Dels=0.0;FS=2.52;HRun=1;HaplotypeScore=0.0;MQ=51.33;MQ0=0;MQRankSum=0.262;QD=20.83;ReadPosRankSum=1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267260    GT:AD:DP:GQ:PL    0/1:5,15:20:99:447,0,132
12    119568670    rs7298583    C    A    193.96    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.871;QD=8.43;ReadPosRankSum=0.871;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545224    GT:AD:DP:GQ:PL    0/1:15,8:23:99:224,0,449
12    119568691    rs4298970    A    G    489.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545224    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:522,42,0
12    119568721    rs11064675    T    C    122.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.134;QD=10.23;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545224    GT:AD:DP:GQ:PL    0/1:7,5:12:99:153,0,177
12    119866533    rs1064319    A    G    332    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=1.025;QD=13.28;ReadPosRankSum=0.439;SNPEFF_AMINO_ACID_CHANGE=I46V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_119866488_119866567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327554    GT:AD:DP:GQ:PL    0/1:10,14:25:99:362,0,239
12    119916827    rs116281503    G    A    292.76    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.059;QD=19.52;ReadPosRankSum=0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327554    GT:AD:DP:GQ:PL    0/1:6,9:15:99:323,0,165
12    119937983    rs482802    A    C    1271.40    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.593;DB;DP=91;Dels=0.0;FS=2.566;HRun=1;HaplotypeScore=0.8941;MQ=59.54;MQ0=0;MQRankSum=0.893;QD=13.97;ReadPosRankSum=2.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327554    GT:AD:DP:GQ:PL    0/1:47,44:91:99:1301,0,1455
12    119958068    rs573590    T    C    375.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.394;DB;DP=45;Dels=0.0;FS=2.675;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.108;QD=8.34;ReadPosRankSum=0.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327554    GT:AD:DP:GQ:PL    0/1:30,15:45:99:405,0,961
12    119960612    rs708887    G    T    1178.06    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.362;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.571;QD=17.32;ReadPosRankSum=0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327554    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1208,0,1094
12    120156408    rs2285595    G    A    1993.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4972;MQ=59.58;MQ0=0;QD=36.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536325    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2026,153,0
12    120158203    rs7299963    C    T    417.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=34.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536325    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:450,33,0
12    120158529    rs3213625    G    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    120171995    rs278109    T    C    1830.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_AMINO_ACID_CHANGE=R1066;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120171969_120172162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1863,144,0
12    120189688    rs1318272    A    G    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
12    120189879    rs904655    A    G    1325.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.13;SNPEFF_AMINO_ACID_CHANGE=A918;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120189855_120190052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1358,105,0
12    120189888    rs904654    T    C    1310.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=31.97;SNPEFF_AMINO_ACID_CHANGE=T915;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120189855_120190052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1344,108,0
12    120196213    rs2074052    C    G    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
12    120196295    rs35168868    CA    C    498.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=35.1401;IndelType=D;MQ=60.77;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:541,42,0
12    120205095    rs203327    T    G    840.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:874,66,0
12    120210270    rs203331    A    C    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:70,6,0
12    120210337    rs203332    G    A    311.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:345,27,0
12    120220282    rs440299    A    G    2231.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539413    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2265,178,0
12    120220589    rs385959    C    T    268.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.36;MQ0=0;QD=29.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539413    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:301,24,0
12    120221452    rs2240309    G    A    87.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539413    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
12    120221636    rs2240310    C    T    3860.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.614;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.37;QD=32.17;ReadPosRankSum=0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539413    GT:AD:DP:GQ:PL    1/1:1,118:120:99:3860,258,0
12    120270528    rs4767849    T    C    1331.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1364,105,0
12    120288179    rs34256172    T    TA    419.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.145;DB;DP=29;FS=8.846;HRun=13;HaplotypeScore=130.5871;IndelType=I;MQ=59.53;MQ0=0;MQRankSum=0.776;QD=14.46;ReadPosRankSum=1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261833    GT:AD:DP:GQ:PL    1/1:9,17:29:9.25:460,9,0
12    120575549    rs3864938    A    C    352.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_AMINO_ACID_CHANGE=Y2155D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120575349_120575618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,14:14:27.09:385,27,0
12    120576265    rs2269940    T    C    541.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:575,48,0
12    120576813    rs67609099    T    TA    137.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;FS=0.0;HRun=8;HaplotypeScore=19.0627;IndelType=I;MQ=62.36;MQ0=0;MQRankSum=-0.248;QD=15.33;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    0/1:3,6:9:55.34:177,0,55
12    120586193    rs2240317    A    C    410.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:444,33,0
12    120588842    rs3932409    C    T    894.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548132    GT:AD:DP:GQ:PL    1/1:0,25:25:72.20:927,72,0
12    120588852    rs4503602    A    G    948.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548132    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:981,75,0
12    120589064    rs2286045    G    C    1284.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=A1398;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120588949_120589195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1317,108,0
12    120589160    rs2286046    A    G    609.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=27.71;SNPEFF_AMINO_ACID_CHANGE=L1366;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120588949_120589195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,22:22:48.13:643,48,0
12    120591143    rs12312562    A    G    940.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.36;SNPEFF_AMINO_ACID_CHANGE=Y1312;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120591017_120591211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,30:30:75.23:974,75,0
12    120591251    rs10735071    C    T    578.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547369    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:612,48,0
12    120594134    rs2240318    A    G    204.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547369    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:237,21,0
12    120602078    rs2286049    T    G    3463.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551549    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3464,268,0
12    120606163    rs6490286    T    C    743.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:777,63,0
12    120608031    rs2286050    A    G    2611.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=T487;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120607973_120608125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2645,205,0
12    120612699    rs7135914    C    T    98.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548821    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:131,12,0
12    120612950    .    AAAG    A    62.96    QDFilter2    AB=0.929;AC=1;AF=0.50;AN=2;BaseQRankSum=5.183;DP=104;FS=75.351;HRun=0;HaplotypeScore=826.4071;IndelType=D;MQ=48.38;MQ0=0;MQRankSum=-1.717;QD=0.61;ReadPosRankSum=-2.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548821    GT:AD:DP:GQ:PL    0/1:96,8:104:99:102,0,1090
12    120612951    .    AAG    A    147.25    QDFilter2    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=5.638;DP=107;FS=77.909;HRun=0;HaplotypeScore=790.9399;IndelType=D;MQ=48.75;MQ0=0;MQRankSum=-1.594;QD=1.38;ReadPosRankSum=-2.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548821    GT:AD:DP:GQ:PL    0/1:86,21:107:99:186,0,1200
12    120612952    .    AG    A    140.07    QDFilter2    AB=0.929;AC=1;AF=0.50;AN=2;BaseQRankSum=5.326;DP=104;FS=68.37;HRun=1;HaplotypeScore=756.7602;IndelType=D;MQ=49.74;MQ0=0;MQRankSum=-2.126;QD=1.35;ReadPosRankSum=-2.983;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548821    GT:AD:DP:GQ:PL    0/1:96,7:104:99:179,0,1285
12    120613428    rs2286051    C    T    160.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548821    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
12    120614093    rs2269945    C    T    807.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:841,66,0
12    120622885    rs12306075    A    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    120628045    .    AG    A    127.26    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=3.0;DP=20;FS=9.108;HRun=1;HaplotypeScore=174.989;IndelType=D;MQ=45.63;MQ0=0;MQRankSum=-2.071;QD=6.36;ReadPosRankSum=1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCN1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300648    GT:AD:DP:GQ:PL    0/1:13,7:20:99:166,0,115
12    120636549    rs2074540    C    A    1285.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=32.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPLP0;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548495    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1319,99,0
12    120661977    rs4767884    T    C    468.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=26.05;SNPEFF_AMINO_ACID_CHANGE=S71G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120661954_120662180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536957    GT:AD:DP:GQ:PL    1/1:0,18:18:39.12:502,39,0
12    120720038    rs7960743    T    C    528.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=NME2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242630    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:562,42,0
12    120763440    rs2070873    C    A    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308366    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    120763699    .    C    CCA    90.99    QDFilter2    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=2.699;DP=65;FS=98.851;HRun=0;HaplotypeScore=336.2701;IndelType=I;MQ=55.33;MQ0=0;MQRankSum=-2.308;QD=1.4;ReadPosRankSum=-4.635;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_12_120763664_120763823;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G1B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000308366    GT:AD:DP:GQ:PL    0/1:51,12:65:99:130,0,1615
12    120791197    rs2285679    G    A    602.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.25;MQ0=0;QD=28.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257552    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:635,51,0
12    120800823    rs757123    A    G    2285.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4673;MQ=59.46;MQ0=0;QD=26.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257552    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2318,204,0
12    120878530    rs8903    T    C    80.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=26.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=COX6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550009    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
12    120884328    rs2235217    C    T    117.13    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=21;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=2.8194;MQ=60.0;MQ0=0;MQRankSum=-0.307;QD=5.58;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=G15;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120884241_120884364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL021546.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551765    GT:AD:DP:GQ:PL    0/1:14,6:21:99:147,0,306
12    120897652    rs28390349    T    C    339.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229390    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:373,27,0
12    120902007    rs542407    T    C    1343.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL021546.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229384    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1376,111,0
12    120903610    rs75905531    C    A    156.61    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.214;DB;DP=24;Dels=0.0;FS=2.793;HRun=8;HaplotypeScore=1.2434;MQ=58.05;MQ0=0;MQRankSum=-0.031;QD=6.53;ReadPosRankSum=0.704;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL021546.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551765    GT:AD:DP:GQ:PL    0/1:16,8:24:99:187,0,494
12    120907147    rs61945873    G    A    67.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.2;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000229390    GT:AD:DP:GQ:PL    0/1:3,3:6:27.28:97,0,27
12    120934407    rs1563333    C    T    398.33    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=9.48;ReadPosRankSum=0.027;SNPEFF_AMINO_ACID_CHANGE=F61;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120934219_120934699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNLL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000548214    GT:AD:DP:GQ:PL    0/1:19,23:42:99:428,0,578
12    120941215    rs7471    T    C    151.53    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9226;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.65;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302223    GT:AD:DP:GQ:PL    0/1:2,5:7:62.92:182,0,63
12    120941927    rs7136951    C    T    733.04    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.799;DB;DP=44;Dels=0.0;FS=3.212;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=16.66;ReadPosRankSum=1.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288532    GT:AD:DP:GQ:PL    0/1:21,23:44:99:763,0,696
12    120947788    rs4766968    G    C    146.11    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.272;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=7.69;ReadPosRankSum=-0.132;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547943    GT:AD:DP:GQ:PL    0/1:13,6:19:99:176,0,443
12    120947948    rs500003    G    A    565.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288532    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:599,45,0
12    120966659    rs55848094    G    A    220.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.414;DB;DP=25;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.9933;MQ=59.07;MQ0=0;MQRankSum=-0.416;QD=8.82;ReadPosRankSum=0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288532    GT:AD:DP:GQ:PL    0/1:15,10:25:99:250,0,527
12    120966921    rs3742052    A    G    655.15    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9463;MQ=60.0;MQ0=0;MQRankSum=0.506;QD=17.71;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=A8;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_120966743_120966985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288532    GT:AD:DP:GQ:PL    0/1:16,21:37:99:685,0,496
12    120990582    rs12309824    A    C    138.66    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=23.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537997    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:169,0,21
12    120992401    rs3213565    C    T    153.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=19.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537997    GT:AD:DP:GQ:PL    0/1:3,5:8:99:183,0,104
12    120994932    rs7956998    G    A    92.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.421;QD=7.73;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537997    GT:AD:DP:GQ:PL    0/1:6,6:12:99:123,0,109
12    120995332    rs2292681    G    A    1331.37    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.053;DB;DP=89;Dels=0.0;FS=4.145;HRun=1;HaplotypeScore=0.9997;MQ=59.27;MQ0=0;MQRankSum=1.069;QD=14.96;ReadPosRankSum=-0.974;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535417    GT:AD:DP:GQ:PL    0/1:39,50:89:99:1361,0,1150
12    120998443    rs603574    A    G    134.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=9.64;ReadPosRankSum=0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535417    GT:AD:DP:GQ:PL    0/1:8,6:14:99:165,0,287
12    120998481    rs787949    G    A    939.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535417    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:972,72,0
12    121004564    rs35194242    CAA    C    241.42    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=42;FS=0.0;HRun=18;HaplotypeScore=296.6996;IndelType=D;MQ=56.86;MQ0=0;MQRankSum=0.879;QD=5.75;ReadPosRankSum=1.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535395    GT:AD:DP:GQ:PL    0/1:18,17:42:99:280,0,213
12    121004590    rs546417    C    A    650.92    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=66;Dels=0.01;FS=3.059;HRun=0;HaplotypeScore=5.1948;MQ=57.17;MQ0=0;MQRankSum=-0.669;QD=9.72;ReadPosRankSum=1.781;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535395    GT:AD:DP:GQ:PL    0/1:26,32:66:99:681,0,629
12    121009198    rs651627    C    T    33.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.62;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540046    GT:AD:DP:GQ:PL    0/1:4,2:6:63.71:64,0,120
12    121017171    rs7174    A    G    1146.60    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=78;Dels=0.0;FS=0.887;HRun=0;HaplotypeScore=0.8667;MQ=59.7;MQ0=0;MQRankSum=-0.494;QD=14.7;ReadPosRankSum=-0.168;SNPEFF_AMINO_ACID_CHANGE=L148;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121016848_121017215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357500    GT:AD:DP:GQ:PL    0/1:37,41:78:99:1177,0,1091
12    121017243    rs509445    A    C    636.15    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.031;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=10.78;ReadPosRankSum=0.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539716    GT:AD:DP:GQ:PL    0/1:33,26:59:99:666,0,1121
12    121017439    rs563920    A    G    560.84    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.459;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.96;MQ0=0;MQRankSum=-0.05;QD=16.02;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539716    GT:AD:DP:GQ:PL    0/1:18,17:35:99:591,0,586
12    121017474    rs3833953    GT    G    411.96    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=4.284;DB;DP=28;FS=1.637;HRun=1;HaplotypeScore=111.1293;IndelType=D;MQ=59.95;MQ0=0;MQRankSum=1.29;QD=14.71;ReadPosRankSum=-0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539716    GT:AD:DP:GQ:PL    0/1:15,13:28:99:451,0,623
12    121088268    .    G    A    61.13    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.66;MQ0=0;MQRankSum=-1.159;QD=6.11;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316803    GT:AD:DP:GQ:PL    0/1:6,4:10:91.12:91,0,167
12    121093301    rs1151872    A    G    108.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288616    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:141,12,0
12    121093419    rs693388    A    G    840.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.2;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288616    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:874,69,0
12    121093629    rs112935060    CGTGCGT    C    3460.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.359;DB;DP=72;FS=0.0;HRun=0;HaplotypeScore=521.0407;IndelType=D;MQ=48.23;MQ0=1;MQRankSum=0.027;QD=47.4;ReadPosRankSum=-0.027;SNPEFF_AMINO_ACID_CHANGE=RAC6R;SNPEFF_CODON_CHANGE=cgtgcgtgt/cgt;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_12_121093102_121094075;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453000    GT:AD:DP:GQ:PL    1/1:10,63:72:99:3461,183,0
12    121094110    rs569499    T    C    383.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288616    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:416,36,0
12    121097622    rs529584    G    A    931.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288616    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:965,72,0
12    121201167    rs13746    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    121201611    rs10692319    C    CTTTT    3392.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.0;HRun=11;HaplotypeScore=555.0684;IndelType=I;MQ=49.35;MQ0=0;QD=41.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392495    GT:AD:DP:GQ:PL    1/1:23,45:81:99:3393,183,0
12    121201676    rs5801401    CAA    C    1228.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=11;HaplotypeScore=255.3516;IndelType=D;MQ=52.32;MQ0=0;QD=25.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392495    GT:AD:DP:GQ:PL    1/1:9,39:48:99:1270,120,0
12    121202664    rs9431    A    C    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536996    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    121205078    rs3213572    G    A    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536996    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    121206055    rs586305    T    A    722.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536996    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:756,57,0
12    121206494    rs697859    G    A    205.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=29.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543608    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
12    121220375    rs2393717    G    C    288.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534966    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:321,24,0
12    121221628    rs7137504    C    T    484.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534966    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:517,39,0
12    121222411    rs3213570    C    G    511.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353487    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:544,39,0
12    121248584    rs674021    G    A    2082.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC069214.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353487    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2115,154,0
12    121416622    rs1169289    C    G    580.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=30.57;SNPEFF_AMINO_ACID_CHANGE=L17;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121416346_121416897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:614,45,0
12    121416650    rs1169288    A    C    391.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=I27L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121416346_121416897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:424,33,0
12    121416988    rs2244608    A    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    121426545    rs1169293    G    A    172.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:206,18,0
12    121426594    rs1169294    G    A    653.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:0,20:20:54.13:686,54,0
12    121431225    rs1169300    G    A    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    121431300    rs1169301    C    T    312.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:346,27,0
12    121432302    rs1169302    T    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    121435342    rs2259820    C    T    648.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.05;MQ0=0;QD=27.01;SNPEFF_AMINO_ACID_CHANGE=L280;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121435277_121435468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543027    GT:AD:DP:GQ:PL    1/1:0,23:24:54.17:681,54,0
12    121435427    rs2464196    G    A    587.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.36;SNPEFF_AMINO_ACID_CHANGE=S308N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121435277_121435468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543027    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:620,48,0
12    121435475    rs2464195    G    A    511.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.11;SNPEFF_AMINO_ACID_CHANGE=R503H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121435277_121435594;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340577    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:545,42,0
12    121435587    rs2259816    G    T    248.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.59;SNPEFF_AMINO_ACID_CHANGE=V540;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121435277_121435594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340577    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:281,21,0
12    121437221    rs1169304    T    C    1016.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=28.24;SNPEFF_AMINO_ACID_CHANGE=L551S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121437071_121437430;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541395    GT:AD:DP:GQ:PL    1/1:0,36:36:81.26:1050,81,0
12    121437382    rs1169305    A    G    334.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=S395G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121437286_121437430;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543027    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:368,27,0
12    121438844    rs735396    T    C    590.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288757    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:624,48,0
12    121442670    rs1169313    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    121444025    rs58917833    AG    A    194.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=102.3878;IndelType=D;MQ=43.73;MQ0=0;QD=27.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257555    GT:AD:DP:GQ:PL    1/1:1,6:7:21.05:236,21,0
12    121454257    rs2258227    T    A    1926.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=T7;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121454133_121454300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288757    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1959,147,0
12    121454313    rs2258287    C    A    1611.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5439;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257570    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1645,120,0
12    121471337    rs3213545    G    A    1871.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_AMINO_ACID_CHANGE=L136;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121471264_121471546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OASL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257570    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1905,144,0
12    121476423    rs10774580    A    G    80.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OASL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257570    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
12    121600465    rs17435031    T    G    30.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.07;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:4,2:6:60.38:60,0,140
12    121603053    rs208304    T    C    117.70    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.634;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.71;MQ0=0;MQRankSum=0.053;QD=6.54;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:13,5:18:99:148,0,415
12    121603745    rs208306    T    G    349.52    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.685;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.6;MQ0=0;MQRankSum=-0.158;QD=19.42;ReadPosRankSum=-2.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:5,13:18:99:380,0,146
12    121603825    rs36144485    ATGTT    A    576.77    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=5.302;DB;DP=46;FS=4.821;HRun=0;HaplotypeScore=281.2251;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=-1.496;QD=12.54;ReadPosRankSum=-0.052;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:31,15:46:99:616,0,1906
12    121603856    rs208307    C    G    461.58    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=67;Dels=0.0;FS=1.367;HRun=1;HaplotypeScore=0.9578;MQ=57.72;MQ0=0;MQRankSum=-1.926;QD=6.89;ReadPosRankSum=1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:46,21:67:99:492,0,1602
12    121604122    rs28360453    C    T    725.15    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=4.04;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.98;MQ0=0;MQRankSum=2.241;QD=18.59;ReadPosRankSum=-1.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:16,23:39:99:755,0,387
12    121604126    rs208308    A    G    417.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.483;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.583;QD=11.94;ReadPosRankSum=1.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:20,15:35:99:448,0,634
12    121604135    rs208309    A    T    448.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.29;MQ0=0;MQRankSum=-2.318;QD=14.01;ReadPosRankSum=0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:16,16:32:99:478,0,504
12    121605074    rs503720    G    A    173.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
12    121605189    rs504677    C    T    521.43    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.33;DB;DP=43;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.665;MQ=60.0;MQ0=0;MQRankSum=-1.146;QD=12.13;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535928    GT:AD:DP:GQ:PL    0/1:23,20:43:99:551,0,746
12    121605355    rs7958311    G    A    1022.32    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=4.375;DB;DP=75;Dels=0.0;FS=4.989;HRun=0;HaplotypeScore=1.1567;MQ=59.69;MQ0=0;MQRankSum=1.317;QD=13.63;ReadPosRankSum=0.728;SNPEFF_AMINO_ACID_CHANGE=R100H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121605291_121605427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328963    GT:AD:DP:GQ:PL    0/1:43,32:75:99:1052,0,1236
12    121605599    rs63169561    C    T    86.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=10.85;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545434    GT:AD:DP:GQ:PL    0/1:4,4:8:99:117,0,109
12    121613113    .    CA    C    31.32    QDFilter2    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DP=36;FS=0.0;HRun=19;HaplotypeScore=311.9778;IndelType=D;MQ=49.28;MQ0=0;MQRankSum=0.703;QD=0.87;ReadPosRankSum=2.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328963    GT:AD:DP:GQ:PL    0/1:20,11:36:70.34:70,0,259
12    121622024    rs28360458    G    A    600.90    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.97;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.818;QD=20.03;ReadPosRankSum=-0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328963    GT:AD:DP:GQ:PL    0/1:11,19:30:99:631,0,299
12    121622520    rs1653624    A    T    157.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.43;SNPEFF_AMINO_ACID_CHANGE=N279I;SNPEFF_CODON_CHANGE=aAc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121622108_121622605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=P2RX7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541446    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
12    121647974    .    G    T    84.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=12.09;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=G3C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121647660_121648101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337233    GT:AD:DP:GQ:PL    0/1:3,4:7:91.40:115,0,91
12    121682051    rs2686340    T    C    143.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324774    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
12    121690548    rs2686344    T    C    235.74    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9649;MQ=59.2;MQ0=0;MQRankSum=-0.298;QD=8.13;ReadPosRankSum=-0.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535524    GT:AD:DP:GQ:PL    0/1:19,10:29:99:266,0,546
12    121690555    rs2686345    T    C    140.16    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9977;MQ=59.07;MQ0=0;MQRankSum=-0.481;QD=5.61;ReadPosRankSum=-0.764;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535524    GT:AD:DP:GQ:PL    0/1:16,9:25:99:170,0,500
12    121764799    rs4980993    A    C    718.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANAPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535463    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:752,57,0
12    121768248    rs2280067    C    T    88.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=22.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANAPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539612    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
12    121773552    rs3751162    T    C    436.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANAPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261819    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:469,36,0
12    121785795    rs1169961    C    A    316.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANAPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261819    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:350,27,0
12    121789887    rs1647256    T    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANAPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261819    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
12    121789927    rs1799525    C    A    366.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANAPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261819    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:400,30,0
12    121870922    rs12427382    G    A    398.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261824    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:432,33,0
12    121871006    rs11065575    A    C    370.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_AMINO_ACID_CHANGE=F1282V;SNPEFF_CODON_CHANGE=Ttt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121870929_121871011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261824    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:403,33,0
12    121877487    rs11065576    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536036    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
12    121878659    rs1064951    C    T    759.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=Q1121;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121878619_121878780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377069    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:792,60,0
12    121879111    rs2288154    G    C    483.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538243    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:516,39,0
12    121880520    rs3751131    G    A    292.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=D276;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121879960_121880639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542973    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
12    121881848    rs10849885    G    A    1971.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=Y174;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_121881815_121882075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542973    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2004,150,0
12    121882098    rs3817551    T    G    912.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261824    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:946,72,0
12    122012243    rs28506195    C    T    126.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540191    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
12    122017848    rs61355823    CA    C    51.27    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=0.478;DB;DP=91;FS=2.698;HRun=17;HaplotypeScore=650.2642;IndelType=D;MQ=42.13;MQ0=0;MQRankSum=-1.419;QD=0.56;ReadPosRankSum=1.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261824    GT:AD:DP:GQ:PL    0/1:68,11:91:90.30:90,0,696
12    122017865    .    AG    A    110.14    QDFilter2    AB=0.913;AC=1;AF=0.50;AN=2;BaseQRankSum=3.263;DP=115;FS=2.247;HRun=1;HaplotypeScore=864.7521;IndelType=D;MQ=39.99;MQ0=0;MQRankSum=-1.322;QD=0.96;ReadPosRankSum=2.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261824    GT:AD:DP:GQ:PL    0/1:104,11:115:99:149,0,1104
12    122064773    rs67647207    CCCGCCA    C    1040.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=179.4034;IndelType=D;MQ=53.19;MQ0=0;QD=40.03;SNPEFF_AMINO_ACID_CHANGE=PP43-;SNPEFF_CODON_CHANGE=ccgcca/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_12_122064455_122064956;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORAI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330079    GT:AD:DP:GQ:PL    1/1:5,21:26:54.18:1083,54,0
12    122079441    rs3825175    T    C    1819.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.42;MQ0=0;QD=30.84;SNPEFF_AMINO_ACID_CHANGE=T268;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122078947_122080583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORAI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330079    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1852,147,0
12    122079668    rs712853    A    G    289.89    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.044;QD=28.99;ReadPosRankSum=-1.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORAI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537188    GT:AD:DP:GQ:PL    0/1:1,9:10:12.15:320,0,12
12    122097007    rs11043313    C    T    557.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.98;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355329    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:590,48,0
12    122097043    rs71453573    GCACA    G    741.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=246.5225;IndelType=D;MQ=49.8;MQ0=0;QD=22.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355329    GT:AD:DP:GQ:PL    1/1:13,17:32:55.02:784,55,0
12    122186092    .    G    A    107.41    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.72;QD=15.34;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM120B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449592    GT:AD:DP:GQ:PL    0/1:2,5:7:55.61:137,0,56
12    122186113    .    G    GCA    220.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DP=10;FS=0.0;HRun=0;HaplotypeScore=59.9762;IndelType=I;MQ=57.66;MQ0=0;MQRankSum=-1.268;QD=22.09;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM120B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449592    GT:AD:DP:GQ:PL    0/1:5,5:10:99:260,0,187
12    122186128    rs150833560    A    G    120.94    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=-1.2;QD=9.3;ReadPosRankSum=1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM120B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449592    GT:AD:DP:GQ:PL    0/1:7,6:13:99:151,0,200
12    122199655    rs7957751    A    G    202.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=58.95;MQ0=0;MQRankSum=-0.722;QD=9.2;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM120B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449592    GT:AD:DP:GQ:PL    0/1:11,11:22:99:232,0,371
12    122199774    rs7980551    C    G    36.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.21;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM120B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449592    GT:AD:DP:GQ:PL    0/1:3,2:5:66.03:66,0,101
12    122208989    rs34623055    A    G    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM120B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449592    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    122212375    rs11043194    A    G    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267205    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
12    122212525    rs11043195    C    G    311.98    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=27;Dels=0.0;FS=3.925;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.051;QD=11.55;ReadPosRankSum=0.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267205    GT:AD:DP:GQ:PL    0/1:14,13:27:99:342,0,288
12    122212659    rs11043196    C    T    161.50    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=18;Dels=0.0;FS=3.854;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=8.97;ReadPosRankSum=1.902;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267205    GT:AD:DP:GQ:PL    0/1:11,7:18:99:191,0,376
12    122212752    rs7314742    G    T    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.15;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267205    GT:AD:DP:GQ:PL    0/1:2,2:4:64.97:67,0,65
12    122233495    rs712852    G    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267205    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
12    122234089    rs1168663    T    A    582.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=34.29;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267205    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:616,48,0
12    122266139    rs184142719    A    G    45.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    122284715    rs2247291    T    C    147.29    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.55;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542159    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:177,0,21
12    122286736    rs1154515    C    T    78.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.65;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542159    GT:AD:DP:GQ:PL    0/1:1,3:4:24.09:109,0,24
12    122292506    rs145318909    C    T    243.03    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.523;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.42;MQ0=0;MQRankSum=0.368;QD=12.15;ReadPosRankSum=-0.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535114    GT:AD:DP:GQ:PL    0/1:9,11:20:99:273,0,283
12    122295335    rs1154510    T    C    380.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.999;DB;DP=28;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.815;QD=13.58;ReadPosRankSum=1.218;SNPEFF_AMINO_ACID_CHANGE=T30A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122295234_122295338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545969    GT:AD:DP:GQ:PL    0/1:14,14:28:99:410,0,444
12    122295344    rs2707072    T    A    386.74    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=28;Dels=0.0;FS=4.869;HRun=2;HaplotypeScore=0.9469;MQ=59.17;MQ0=0;MQRankSum=0.17;QD=13.81;ReadPosRankSum=1.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289004    GT:AD:DP:GQ:PL    0/1:13,15:28:99:417,0,415
12    122326812    rs2230681    T    C    44.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=6.36;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=V17A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122326677_122326900;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261817    GT:AD:DP:GQ:PL    0/1:2,5:7:69.51:74,0,70
12    122359061    rs2004863    A    T    159.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=17.77;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261817    GT:AD:DP:GQ:PL    0/1:3,6:9:97.34:190,0,97
12    122359172    rs6486782    T    C    669.50    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.746;DB;DP=51;Dels=0.0;FS=7.399;HRun=0;HaplotypeScore=0.0;MQ=58.72;MQ0=0;MQRankSum=-1.953;QD=13.13;ReadPosRankSum=-1.972;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261817    GT:AD:DP:GQ:PL    0/1:24,27:51:99:699,0,767
12    122359397    .    G    GGAGGAGGAGGAGAAA    2723.71    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.951;DP=64;FS=2.427;HRun=0;HaplotypeScore=632.2304;IndelType=I;MQ=55.82;MQ0=0;MQRankSum=-2.98;QD=42.56;ReadPosRankSum=-2.98;SNPEFF_AMINO_ACID_CHANGE=-63EEEEK;SNPEFF_CODON_CHANGE=-/GAGGAGGAGGAGAAA;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_12_122359192_122359589;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288912    GT:AD:DP:GQ:PL    0/1:46,11:64:99:2763,0,3358
12    122361412    rs10770186    A    G    142.90    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=12.99;ReadPosRankSum=0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-87C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544911    GT:AD:DP:GQ:PL    0/1:4,7:11:99:173,0,136
12    122361929    rs66940520    CT    C    539.96    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=5.017;DB;DP=37;FS=0.0;HRun=4;HaplotypeScore=88.6381;IndelType=D;MQ=60.29;MQ0=0;MQRankSum=0.844;QD=14.59;ReadPosRankSum=0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-87C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544911    GT:AD:DP:GQ:PL    0/1:18,19:37:99:579,0,551
12    122372176    rs78614343    C    T    298.66    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DB;DP=25;Dels=0.0;FS=1.619;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.52;QD=11.95;ReadPosRankSum=-0.027;SNPEFF_AMINO_ACID_CHANGE=C304;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122372153_122372262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288912    GT:AD:DP:GQ:PL    0/1:14,11:25:99:329,0,412
12    122372183    rs77540055    G    A    325.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.154;DB;DP=26;Dels=0.0;FS=3.628;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=12.53;ReadPosRankSum=-0.872;SNPEFF_AMINO_ACID_CHANGE=V307I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122372153_122372262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288912    GT:AD:DP:GQ:PL    0/1:13,13:26:99:356,0,374
12    122380578    rs80292131    C    T    144.23    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=16.03;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288912    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,132
12    122386765    rs1630694    G    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288912    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
12    122386948    rs78910014    G    A    896.09    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.09;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=2.546;QD=11.64;ReadPosRankSum=-0.208;SNPEFF_AMINO_ACID_CHANGE=R417Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122386890_122386967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288912    GT:AD:DP:GQ:PL    0/1:42,35:77:99:926,0,1195
12    122389248    rs1185260    A    G    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546044    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:67,0,71
12    122391963    rs1154513    A    G    395.38    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.951;QD=19.77;ReadPosRankSum=-1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546044    GT:AD:DP:GQ:PL    0/1:7,13:20:99:425,0,223
12    122439274    rs77420122    T    A    220.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.168;QD=10.5;ReadPosRankSum=0.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288912    GT:AD:DP:GQ:PL    0/1:12,9:21:99:251,0,418
12    122439369    rs1182927    T    C    1249.99    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.694;DB;DP=84;Dels=0.0;FS=3.471;HRun=0;HaplotypeScore=1.2434;MQ=59.73;MQ0=0;MQRankSum=0.515;QD=14.88;ReadPosRankSum=0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288912    GT:AD:DP:GQ:PL    0/1:40,44:84:99:1280,0,1225
12    122468687    rs2272132    C    T    688.13    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.779;DB;DP=37;Dels=0.0;FS=1.38;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=18.6;ReadPosRankSum=-0.851;SNPEFF_AMINO_ACID_CHANGE=D58;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122468606_122468687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261822    GT:AD:DP:GQ:PL    0/1:15,22:37:99:718,0,365
12    122468756    rs59397548    A    G    279.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=17.49;ReadPosRankSum=-0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261822    GT:AD:DP:GQ:PL    0/1:6,10:16:99:310,0,198
12    122473148    rs884785    A    G    329.67    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.264;DB;DP=23;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.651;QD=14.33;ReadPosRankSum=0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261822    GT:AD:DP:GQ:PL    0/1:10,13:23:99:360,0,272
12    122473182    rs884786    G    A    470.55    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.368;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=13.84;ReadPosRankSum=-1.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261822    GT:AD:DP:GQ:PL    0/1:15,19:34:99:501,0,400
12    122492598    rs2280573    A    G    374.24    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.48;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=-1.555;QD=12.9;ReadPosRankSum=1.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261822    GT:AD:DP:GQ:PL    0/1:13,16:29:99:404,0,412
12    122492978    rs2280574    T    C    187.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=20.82;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261822    GT:AD:DP:GQ:PL    0/1:3,6:9:75.64:217,0,76
12    122497001    rs28629903    T    C    411.88    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.236;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=59.6;MQ0=0;MQRankSum=1.227;QD=8.76;ReadPosRankSum=-0.281;SNPEFF_AMINO_ACID_CHANGE=L189;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122496998_122498811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261822    GT:AD:DP:GQ:PL    0/1:28,19:47:99:442,0,882
12    122612325    rs7488393    G    A    486.30    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.5;MQ0=0;MQRankSum=1.309;QD=15.69;ReadPosRankSum=-2.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319080    GT:AD:DP:GQ:PL    0/1:14,17:31:99:516,0,482
12    122612350    rs7486198    G    T    649.66    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.256;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4328;MQ=57.82;MQ0=0;MQRankSum=-0.426;QD=15.11;ReadPosRankSum=0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319080    GT:AD:DP:GQ:PL    0/1:20,23:43:99:680,0,625
12    122612598    rs7484733    T    C    507.99    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.172;DB;DP=35;Dels=0.0;FS=3.291;HRun=0;HaplotypeScore=0.734;MQ=59.34;MQ0=0;MQRankSum=-0.551;QD=14.51;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319080    GT:AD:DP:GQ:PL    0/1:18,17:35:99:538,0,516
12    122612625    rs10847611    C    G    329.22    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.176;QD=15.68;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319080    GT:AD:DP:GQ:PL    0/1:10,11:21:99:359,0,208
12    122612635    rs6489238    G    A    237.99    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=14.87;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319080    GT:AD:DP:GQ:PL    0/1:7,9:16:99:268,0,191
12    122613599    rs10847853    A    G    164.61    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.093;QD=12.66;ReadPosRankSum=0.101;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_122612427_122613773;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535430    GT:AD:DP:GQ:PL    0/1:7,6:13:99:195,0,242
12    122614060    rs7487608    G    T    256.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=15;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.473;QD=17.11;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319080    GT:AD:DP:GQ:PL    0/1:6,9:15:99:287,0,196
12    122614209    rs35415711    CT    C    396.60    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.556;DB;DP=16;FS=4.559;HRun=3;HaplotypeScore=38.3751;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.673;QD=24.79;ReadPosRankSum=-0.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319080    GT:AD:DP:GQ:PL    0/1:3,13:16:81.55:436,0,82
12    122614387    rs7487292    T    G    60.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.898;QD=4.03;ReadPosRankSum=1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319080    GT:AD:DP:GQ:PL    0/1:10,5:15:90.50:90,0,367
12    122615515    rs4758654    C    G    1129.72    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.505;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=58.72;MQ0=0;MQRankSum=-0.751;QD=16.37;ReadPosRankSum=-1.084;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535430    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1160,0,981
12    122616759    rs7955571    G    A    315.40    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=55.52;MQ0=0;MQRankSum=0.271;QD=19.71;ReadPosRankSum=1.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535430    GT:AD:DP:GQ:PL    0/1:6,10:16:97.59:345,0,98
12    122616766    rs7955575    G    A    308.30    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.754;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=55.8;MQ0=0;MQRankSum=1.055;QD=18.14;ReadPosRankSum=1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535430    GT:AD:DP:GQ:PL    0/1:6,11:17:99:338,0,144
12    122618752    rs113745793    G    GT    138.87    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=21;FS=0.0;HRun=13;HaplotypeScore=90.5398;IndelType=I;MQ=59.42;MQ0=0;MQRankSum=1.22;QD=6.61;ReadPosRankSum=0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377037    GT:AD:DP:GQ:PL    0/1:13,8:21:98.89:178,0,99
12    122622207    rs11307686    CT    C    853.11    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=4.794;DB;DP=67;FS=3.025;HRun=2;HaplotypeScore=181.282;IndelType=D;MQ=59.29;MQ0=0;MQRankSum=-0.383;QD=12.73;ReadPosRankSum=-0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377037    GT:AD:DP:GQ:PL    0/1:39,28:67:99:892,0,1500
12    122623000    rs4758686    T    C    438.09    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.76;MQ0=0;MQRankSum=0.586;QD=12.52;ReadPosRankSum=-1.412;SNPEFF_AMINO_ACID_CHANGE=T233;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122622971_122623098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366272    GT:AD:DP:GQ:PL    0/1:17,18:35:99:468,0,529
12    122625774    rs7975001    T    G    69.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.97;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLXIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366272    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:100,0,67
12    122657271    rs7974857    G    C    233.32    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.884;QD=15.55;ReadPosRankSum=0.412;SNPEFF_AMINO_ACID_CHANGE=G61;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122656577_122657288;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377035    GT:AD:DP:GQ:PL    0/1:6,9:15:99:263,0,154
12    122658379    rs61955584    T    C    402.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.657;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8238;MQ=58.71;MQ0=0;MQRankSum=0.522;QD=11.19;ReadPosRankSum=2.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377035    GT:AD:DP:GQ:PL    0/1:21,15:36:99:433,0,742
12    122658383    rs6489173    A    G    1162.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=59.34;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377035    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1196,90,0
12    122668965    rs10847623    T    C    165.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289014    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
12    122674032    rs10847725    C    T    722.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_AMINO_ACID_CHANGE=P61L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122673958_122674065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289014    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:756,54,0
12    122674143    rs11060051    G    C    403.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537113    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:437,36,0
12    122674758    rs4758651    G    A    1157.40    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.652;DB;DP=73;Dels=0.0;FS=0.889;HRun=0;HaplotypeScore=1.9436;MQ=60.0;MQ0=0;MQRankSum=-0.364;QD=15.85;ReadPosRankSum=-0.618;SNPEFF_AMINO_ACID_CHANGE=R119;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122674617_122674915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289014    GT:AD:DP:GQ:PL    0/1:32,41:73:99:1187,0,954
12    122674780    rs11060094    C    A    772.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.21;DB;DP=63;Dels=0.0;FS=3.501;HRun=1;HaplotypeScore=1.9463;MQ=60.0;MQ0=0;MQRankSum=-0.297;QD=12.27;ReadPosRankSum=0.159;SNPEFF_AMINO_ACID_CHANGE=Q127K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122674617_122674915;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289014    GT:AD:DP:GQ:PL    0/1:35,28:63:99:803,0,1190
12    122675028    rs35348925    AC    A    248.07    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;FS=4.472;HRun=3;HaplotypeScore=42.032;IndelType=D;MQ=60.77;MQ0=0;MQRankSum=0.4;QD=17.72;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537113    GT:AD:DP:GQ:PL    0/1:5,9:14:99:287,0,174
12    122675081    rs4758677    G    A    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537113    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:68,0,33
12    122675838    rs67189233    T    C    114.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=14.3;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537113    GT:AD:DP:GQ:PL    0/1:4,4:8:99:144,0,127
12    122675882    rs67032306    C    T    189.61    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=14.59;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537113    GT:AD:DP:GQ:PL    0/1:5,8:13:99:220,0,169
12    122676013    rs11060167    A    C    431.70    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=27;Dels=0.0;FS=4.374;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.694;QD=15.99;ReadPosRankSum=-2.392;SNPEFF_AMINO_ACID_CHANGE=R145;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122675927_122676114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425921    GT:AD:DP:GQ:PL    0/1:13,14:27:99:462,0,422
12    122684966    rs11060679    G    C    1357.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289014    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1390,108,0
12    122689161    rs12827843    C    G    264.50    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.6;MQ0=0;MQRankSum=-0.38;QD=14.69;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIABLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267169    GT:AD:DP:GQ:PL    0/1:7,11:18:99:294,0,174
12    122689181    rs7136356    C    G    271.49    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.57;MQ0=0;MQRankSum=-0.702;QD=14.29;ReadPosRankSum=-0.619;SNPEFF_AMINO_ACID_CHANGE=P6A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122689069_122689231;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324189    GT:AD:DP:GQ:PL    0/1:8,11:19:99:301,0,269
12    122689244    rs12828049    C    T    100.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.718;QD=8.39;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIABLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267169    GT:AD:DP:GQ:PL    0/1:6,6:12:99:131,0,115
12    122691738    rs4758675    C    A    951.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_AMINO_ACID_CHANGE=R289;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122689147_122692084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535274    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:984,72,0
12    122692820    rs12870    T    C    375.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324189    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
12    122694283    rs74759407    A    G    1349.32    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.022;DB;DP=122;Dels=0.0;FS=2.541;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.819;QD=11.06;ReadPosRankSum=0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324189    GT:AD:DP:GQ:PL    0/1:67,55:122:99:1379,0,2018
12    122701001    rs2271411    T    A    724.72    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.689;DB;DP=67;Dels=0.0;FS=2.023;HRun=10;HaplotypeScore=1.933;MQ=59.31;MQ0=0;MQRankSum=0.993;QD=10.82;ReadPosRankSum=0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIABLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485724    GT:AD:DP:GQ:PL    0/1:38,29:67:99:755,0,1227
12    122703014    rs7963565    C    T    310.06    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.142;QD=11.93;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIABLO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267169    GT:AD:DP:GQ:PL    0/1:15,11:26:99:340,0,445
12    122720310    rs2271408    C    T    1307.12    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=113;Dels=0.0;FS=1.644;HRun=0;HaplotypeScore=2.133;MQ=59.8;MQ0=0;MQRankSum=1.757;QD=11.57;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS33A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267199    GT:AD:DP:GQ:PL    0/1:67,46:113:99:1337,0,1875
12    122723317    rs149398083    T    TAC    263.62    PASS    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.224;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=198.8075;IndelType=I;MQ=54.95;MQ0=0;MQRankSum=3.031;QD=6.94;ReadPosRankSum=-1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS33A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536212    GT:AD:DP:GQ:PL    0/1:25,6:38:62.82:303,0,63
12    122724291    rs11057249    C    T    36.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=41.96;MQ0=0;MQRankSum=0.736;QD=12.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS33A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536212    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:66,0,24
12    122762604    rs2271409    T    C    2395.43    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=158;Dels=0.0;FS=4.78;HRun=0;HaplotypeScore=2.5239;MQ=57.17;MQ0=0;MQRankSum=-0.622;QD=15.16;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302528    GT:AD:DP:GQ:PL    0/1:83,74:158:99:2425,0,2690
12    122762763    rs35483741    G    GA    904.63    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=3.503;DB;DP=192;DS;FS=0.0;HRun=15;HaplotypeScore=1394.2006;IndelType=I;MQ=54.75;MQ0=0;MQRankSum=-1.547;QD=4.71;ReadPosRankSum=-4.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302528    GT:AD:DP:GQ:PL    0/1:112,29:192:99:944,0,605
12    122812503    rs1129167    G    C    2305.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=D1034E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122812494_122812709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537178    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2339,172,0
12    122812693    rs77289752    G    T    424.48    FSFilter60;HaplotypeScoreFilter13    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.435;DB;DP=142;Dels=0.0;FS=70.612;HRun=3;HaplotypeScore=46.9854;MQ=50.31;MQ0=0;MQRankSum=-5.983;QD=2.99;ReadPosRankSum=3.036;SNPEFF_AMINO_ACID_CHANGE=T1006K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122812494_122812709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302528    GT:AD:DP:GQ:PL    0/1:85,57:142:99:454,0,1978
12    122812697    .    C    T    129.70    HaplotypeScoreFilter13;QDFilter2    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.205;DP=144;Dels=0.0;FS=42.479;HRun=3;HaplotypeScore=54.7401;MQ=50.65;MQ0=0;MQRankSum=-4.702;QD=0.9;ReadPosRankSum=4.081;SNPEFF_AMINO_ACID_CHANGE=E1005K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122812494_122812709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302528    GT:AD:DP:GQ:PL    0/1:81,63:144:99:160,0,2171
12    122812704    .    C    T    413.25    HaplotypeScoreFilter13    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.828;DP=141;Dels=0.0;FS=57.756;HRun=4;HaplotypeScore=42.1665;MQ=51.01;MQ0=0;MQRankSum=-5.267;QD=2.93;ReadPosRankSum=3.86;SNPEFF_AMINO_ACID_CHANGE=K1002;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_122812494_122812709;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302528    GT:AD:DP:GQ:PL    0/1:80,61:141:99:443,0,2478
12    122817507    rs7956480    A    G    428.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514271    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:462,39,0
12    122826417    rs10846671    A    G    48.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302528    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    122838956    rs4997380    A    G    270.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CLIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541108    GT:AD:DP:GQ:PL    1/1:0,13:13:30.06:304,30,0
12    122963011    rs6416295    T    C    186.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=53.03;MQ0=0;QD=26.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538493    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:220,18,0
12    122964708    rs10846978    T    C    941.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538493    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:975,72,0
12    122966016    rs112283208    T    TA    2268.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.167;DB;DP=112;FS=0.0;HRun=11;HaplotypeScore=533.8298;IndelType=I;MQ=58.3;MQ0=0;MQRankSum=0.389;QD=20.25;ReadPosRankSum=0.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538493    GT:AD:DP:GQ:PL    1/1:25,84:112:99:2310,155,0
12    122966373    rs4758692    T    C    800.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538493    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:833,60,0
12    122974833    rs7311573    G    C    332.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336229    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:366,27,0
12    122975247    rs11318334    GT    G    656.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=51.5541;IndelType=D;MQ=58.55;MQ0=0;QD=38.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336229    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:699,51,0
12    122983460    rs7314638    A    G    3026.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1611;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_122983374_122983872;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536306    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3059,229,0
12    122985057    rs1473553    G    T    62.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331738    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:95,9,0
12    122990369    rs2133557    C    A    393.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=28.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344591    GT:AD:DP:GQ:PL    1/1:0,13:14:33.09:427,33,0
12    122991478    rs9988963    C    G    2074.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.2;MQ0=0;QD=37.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344591    GT:AD:DP:GQ:PL    1/1:0,54:55:99:2108,156,0
12    122993011    rs10773230    C    T    791.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331738    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:825,60,0
12    122999535    rs6489056    C    T    788.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525387    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:822,63,0
12    122999891    rs61956121    T    C    323.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525387    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:356,30,0
12    123001737    rs57311174    G    A    1301.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=31.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525387    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1334,102,0
12    123002143    rs6416298    C    T    88.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525387    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
12    123003317    rs11058562    T    C    2315.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3261;MQ=60.0;MQ0=0;MQRankSum=-1.679;QD=35.62;ReadPosRankSum=0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525387    GT:AD:DP:GQ:PL    1/1:1,64:65:99:2348,147,0
12    123054055    rs1021705    A    T    314.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333479    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:347,27,0
12    123061352    rs78215376    A    AT    1077.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=7;HaplotypeScore=97.4748;IndelType=I;MQ=60.92;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333479    GT:AD:DP:GQ:PL    1/1:3,32:35:93.28:1120,93,0
12    123062594    rs11058797    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333479    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    123067587    rs7398861    G    A    1942.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333479    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1976,144,0
12    123074890    rs1392236    C    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333479    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    123078717    rs75333702    C    A    155.59    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.563;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=9.15;ReadPosRankSum=-0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333479    GT:AD:DP:GQ:PL    0/1:11,6:17:99:186,0,405
12    123079020    rs10847242    T    G    2101.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7323;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=35.62;ReadPosRankSum=1.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333479    GT:AD:DP:GQ:PL    1/1:1,57:59:99:2135,129,0
12    123079035    rs4319547    A    G    1660.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333479    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1693,129,0
12    123087442    rs7307735    A    G    3554.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423927    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3554,265,0
12    123090237    rs7398939    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KNTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377192    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
12    123110585    rs3803004    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356987    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    123110654    rs3803005    T    C    112.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356987    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
12    123186880    rs28682471    C    T    203.33    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.095;DB;DP=54;Dels=0.0;FS=20.286;HRun=1;HaplotypeScore=0.9469;MQ=43.39;MQ0=3;MQRankSum=-3.034;QD=3.77;ReadPosRankSum=-0.744;SNPEFF_AMINO_ACID_CHANGE=M317I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123185840_123187890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328880    GT:AD:DP:GQ:PL    0/1:42,12:54:99:233,0,1162
12    123186900    rs7314976    G    A    85.99    QDFilter2    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=0.368;DB;DP=49;Dels=0.0;FS=3.998;HRun=0;HaplotypeScore=0.0;MQ=40.53;MQ0=1;MQRankSum=-2.919;QD=1.75;ReadPosRankSum=-0.613;SNPEFF_AMINO_ACID_CHANGE=R311C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123185840_123187890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328880    GT:AD:DP:GQ:PL    0/1:37,12:49:99:116,0,1022
12    123200099    rs61955034    T    C    1131.07    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=80;Dels=0.0;FS=2.045;HRun=1;HaplotypeScore=0.0;MQ=53.54;MQ0=0;MQRankSum=-1.662;QD=14.14;ReadPosRankSum=1.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356987    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1161,0,1151
12    123200247    rs56308926    G    C    2169.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9863;MQ=44.92;MQ0=6;QD=29.31;SNPEFF_AMINO_ACID_CHANGE=I346M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123199303_123201439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528880    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2202,175,0
12    123200334    rs116821988    T    C    92.79    MQFilter40    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=46;Dels=0.0;FS=14.878;HRun=0;HaplotypeScore=0.5784;MQ=37.85;MQ0=3;MQRankSum=-0.702;QD=2.02;ReadPosRankSum=0.515;SNPEFF_AMINO_ACID_CHANGE=I317M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123199303_123201439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528880    GT:AD:DP:GQ:PL    0/1:37,9:46:99:123,0,935
12    123200354    .    G    A    246.08    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.438;DP=39;Dels=0.0;FS=14.21;HRun=0;HaplotypeScore=0.8321;MQ=38.04;MQ0=1;MQRankSum=-1.5;QD=6.31;ReadPosRankSum=-0.201;SNPEFF_AMINO_ACID_CHANGE=R311C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123199303_123201439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528880    GT:AD:DP:GQ:PL    0/1:24,15:39:99:276,0,621
12    123200527    rs118091133    T    C    46.63    MQFilter40    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.761;DB;DP=22;Dels=0.0;FS=5.518;HRun=0;HaplotypeScore=0.0;MQ=32.66;MQ0=1;MQRankSum=0.493;QD=2.12;ReadPosRankSum=-1.03;SNPEFF_AMINO_ACID_CHANGE=H253R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123199303_123201439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528880    GT:AD:DP:GQ:PL    0/1:17,5:22:76.62:77,0,426
12    123200693    rs17884481    A    G    543.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9931;MQ=44.17;MQ0=6;MQRankSum=-0.684;QD=12.93;ReadPosRankSum=1.194;SNPEFF_AMINO_ACID_CHANGE=F198L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123199303_123201439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528880    GT:AD:DP:GQ:PL    0/1:21,21:42:99:573,0,418
12    123200768    rs1798192    T    G    748.83    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.037;DB;DP=45;Dels=0.0;FS=11.759;HRun=1;HaplotypeScore=0.0;MQ=54.67;MQ0=0;MQRankSum=-0.239;QD=16.64;ReadPosRankSum=-1.308;SNPEFF_AMINO_ACID_CHANGE=T173P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123199303_123201439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000528880    GT:AD:DP:GQ:PL    0/1:21,24:45:99:779,0,594
12    123200937    rs1696352    T    G    479.05    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=53.08;MQ0=0;MQRankSum=-3.905;QD=9.58;ReadPosRankSum=-0.182;SNPEFF_AMINO_ACID_CHANGE=I116;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123199303_123201439;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528880    GT:AD:DP:GQ:PL    0/1:28,22:50:99:509,0,840
12    123201291    rs3825156    A    G    468.64    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.53;MQ0=0;MQRankSum=-2.809;QD=13.78;ReadPosRankSum=-1.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356987    GT:AD:DP:GQ:PL    0/1:15,19:34:99:499,0,504
12    123253798    rs34056825    T    TAC    306.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=17.0137;IndelType=I;MQ=57.28;MQ0=0;QD=43.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455982    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:348,18,0
12    123265952    rs1798563    A    G    629.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253079    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:663,48,0
12    123281967    rs10744394    G    A    1004.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253079    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1038,75,0
12    123282532    rs4759393    G    A    276.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=27.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253079    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:309,24,0
12    123286148    .    A    G    823.84    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.163;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.51;MQ0=0;MQRankSum=-0.698;QD=17.53;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=E246;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123285671_123286399;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392440    GT:AD:DP:GQ:PL    0/1:21,26:47:99:854,0,614
12    123290951    rs10541585    GTT    G    76.10    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=31;FS=0.0;HRun=19;HaplotypeScore=272.7028;IndelType=D;MQ=52.27;MQ0=0;MQRankSum=1.381;QD=2.45;ReadPosRankSum=1.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253079    GT:AD:DP:GQ:PL    0/1:14,12:31:26.69:115,0,27
12    123297718    rs4759391    T    A    543.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253079    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:576,42,0
12    123307754    rs7954285    C    T    153.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=21.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253079    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:186,18,0
12    123307755    rs2604851    A    G    137.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=19.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253079    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:171,18,0
12    123333065    rs2135014    C    T    1770.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9731;MQ=59.18;MQ0=0;MQRankSum=1.597;QD=34.72;ReadPosRankSum=0.17;SNPEFF_AMINO_ACID_CHANGE=Y70;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123333013_123333155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253083    GT:AD:DP:GQ:PL    1/1:1,50:51:99:1803,120,0
12    123335240    .    T    TG    182.02    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=6;HaplotypeScore=43.2423;IndelType=I;MQ=53.34;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253083    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:224,18,0
12    123335287    rs12369846    A    G    256.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=56.1;MQ0=0;QD=25.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253083    GT:AD:DP:GQ:PL    1/1:0,10:10:30.02:290,30,0
12    123335483    rs2271048    A    G    1508.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376938    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1542,117,0
12    123335488    rs63586961    G    A    1517.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376938    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1550,120,0
12    123335527    rs2271050    C    T    1398.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376938    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1431,108,0
12    123339344    rs2292136    A    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376938    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
12    123339358    rs2292137    C    G    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376938    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,73
12    123339712    rs2292138    A    G    2213.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376938    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2246,172,0
12    123342628    rs34131980    CCTCTT    C    1963.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=213.7751;IndelType=D;MQ=50.81;MQ0=0;QD=61.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452196    GT:AD:DP:GQ:PL    1/1:1,31:32:90.31:2005,90,0
12    123343572    rs5801491    G    GGC    390.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=61.3103;IndelType=I;MQ=54.49;MQ0=0;QD=43.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452196    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:433,27,0
12    123344910    rs937765    A    C    632.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452196    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:665,51,0
12    123345347    rs7306948    G    A    415.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452196    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:448,33,0
12    123345360    rs7298176    T    C    340.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452196    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:373,33,0
12    123345736    rs10847910    C    G    1201.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=T983;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123345678_123345739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253083    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1234,93,0
12    123345756    rs80246891    G    GC    1107.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=4;HaplotypeScore=155.4086;IndelType=I;MQ=60.37;MQ0=0;QD=38.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452196    GT:AD:DP:GQ:PL    1/1:1,28:29:84.28:1150,84,0
12    123352179    rs3825143    C    T    1463.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HIP1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253083    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1496,114,0
12    123433137    rs10848106    T    C    408.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280560    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:442,33,0
12    123460297    rs148367749    TAGAG    T    719.98    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=3.906;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=135.9666;IndelType=D;MQ=57.52;MQ0=0;MQRankSum=-0.546;QD=24.83;ReadPosRankSum=1.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542678    GT:AD:DP:GQ:PL    0/1:14,15:29:99:759,0,1051
12    123460719    rs883562    C    G    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542678    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
12    123460823    rs883563    A    G    334.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.65;MQ0=0;QD=27.84;SNPEFF_AMINO_ACID_CHANGE=P71;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123460800_123460948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFOD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537966    GT:AD:DP:GQ:PL    1/1:0,12:12:33.05:367,33,0
12    123460962    rs884956    T    C    727.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCB9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542678    GT:AD:DP:GQ:PL    1/1:0,26:26:54.18:760,54,0
12    123466111    rs55742290    C    T    450.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.54;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_123463445_123466196;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCB9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542678    GT:AD:DP:GQ:PL    1/1:0,20:20:36.12:484,36,0
12    123471402    rs2049506    T    C    141.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL6IP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315580    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:174,15,0
12    123473254    rs1463877    T    C    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280562    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
12    123477311    rs937564    T    C    315.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436074    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:348,30,0
12    123485188    rs883263    A    G    69.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280562    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:101,9,0
12    123496927    rs940906    A    G    60.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542210    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:93,9,0
12    123498253    rs7305511    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542210    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    123645803    rs1051431    G    A    2757.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.42;MQ0=0;QD=34.9;SNPEFF_AMINO_ACID_CHANGE=Y113;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123645683_123645930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPHOSPH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541603    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2790,202,0
12    123647725    rs1727296    G    C    1422.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPHOSPH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541823    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1456,105,0
12    123651018    rs1621194    T    C    1609.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.51;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPHOSPH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302349    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1643,120,0
12    123651162    rs1716167    A    G    8302.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=59.56;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPHOSPH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302349    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8303,665,0
12    123664514    rs1727301    G    A    323.01    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=11.14;ReadPosRankSum=0.855;SNPEFF_AMINO_ACID_CHANGE=N619;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123664473_123664537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPHOSPH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302349    GT:AD:DP:GQ:PL    0/1:16,13:29:99:353,0,475
12    123665695    rs1727306    A    G    2042.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPHOSPH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302349    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2076,150,0
12    123679171    rs62772062    A    ATT    396.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=15;HaplotypeScore=118.0564;IndelType=I;MQ=56.92;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPHOSPH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302349    GT:AD:DP:GQ:PL    1/1:8,10:23:41.07:439,41,0
12    123694724    rs2682434    C    T    623.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MPHOSPH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302349    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:657,51,0
12    123699200    rs35391675    GTTT    G    2168.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=6;HaplotypeScore=216.0128;IndelType=D;MQ=56.26;MQ0=0;QD=45.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-546D6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537854    GT:AD:DP:GQ:PL    1/1:0,48:48:99:2210,144,0
12    123699520    rs1727322    A    G    821.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=37.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-546D6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537854    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:855,63,0
12    123703103    rs2851451    T    C    591.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=29.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-546D6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535049    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:624,51,0
12    123703226    rs2682431    T    A    127.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-546D6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535049    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
12    123741200    rs10773001    A    G    109.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536130    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
12    123741776    rs1969354    T    C    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425637    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
12    123746357    rs4759416    C    G    2620.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=33.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253233    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2654,193,0
12    123746510    rs4759417    C    T    295.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C12orf65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253233    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:328,24,0
12    123780700    rs143239847    CAAG    C    309.53    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=54.9351;IndelType=D;MQ=51.37;MQ0=0;MQRankSum=-1.67;QD=23.81;ReadPosRankSum=-2.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    0/1:5,8:13:99:349,0,285
12    123782866    rs12582153    C    T    110.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
12    123794022    rs6488867    T    C    3520.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3521,271,0
12    123794450    rs2277343    A    T    1719.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,69:69:99:1752,171,0
12    123794581    rs11057254    A    C    110.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
12    123799974    rs6488868    A    G    2016.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.39;MQ0=0;QD=29.23;SNPEFF_AMINO_ACID_CHANGE=G1021;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123799920_123799991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2050,153,0
12    123801672    rs10846515    T    G    724.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442601    GT:AD:DP:GQ:PL    1/1:0,23:23:66.17:758,66,0
12    123806084    rs114314586    T    C    690.78    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=43;Dels=0.0;FS=3.27;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.381;QD=16.06;ReadPosRankSum=1.589;SNPEFF_AMINO_ACID_CHANGE=M729V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123806073_123806108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442601    GT:AD:DP:GQ:PL    0/1:20,23:43:99:721,0,525
12    123809798    rs10744152    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
12    123810323    rs72419030    AATTTAGG    A    1118.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=110.6496;IndelType=D;MQ=29.0;MQ0=0;QD=79.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:1161,42,0
12    123810662    rs111400678    A    AC    2585    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=5;HaplotypeScore=140.9817;IndelType=I;MQ=61.07;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:4,66:70:99:2627,202,0
12    123810873    rs61388686    G    A    3945.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=I566;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_123810699_123810881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3945,292,0
12    123812207    rs7959415    C    T    1087.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,29:29:87.24:1121,87,0
12    123812611    rs10846517    A    G    1505.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1538,111,0
12    123812629    rs28419092    G    C    1236.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:1,35:36:93.31:1269,93,0
12    123812787    rs10846519    A    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    123813493    rs7301163    C    A    617.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:650,48,0
12    123815146    rs62719360    TA    T    50.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=16;FS=0.0;HRun=17;HaplotypeScore=106.5321;IndelType=D;MQ=52.32;MQ0=0;MQRankSum=-0.751;QD=3.13;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:8,6:16:0.70:88,1,0
12    123815193    rs11346455    CA    C    251.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=35.4203;IndelType=D;MQ=44.98;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:294,21,0
12    123815654    rs10744153    A    C    173.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
12    123815668    rs6488869    A    C    207.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
12    123816007    rs11282939    T    TATGTTG    791.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=44.8364;IndelType=I;MQ=45.61;MQ0=0;QD=71.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:3,7:11:27.09:833,27,0
12    123816129    rs7488340    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    123820780    rs7972811    G    T    376.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:410,30,0
12    123825389    rs7315453    T    C    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
12    123832710    rs11325003    TA    T    385.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=6;HaplotypeScore=49.3529;IndelType=D;MQ=60.9;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:427,36,0
12    123832746    rs10846523    G    A    175    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
12    123832854    rs11057287    G    T    80.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
12    123832912    rs35818434    T    C    83.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
12    123832937    rs7971557    G    A    83.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBNO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267176    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
12    123875394    rs28660993    C    T    1061.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537270    GT:AD:DP:GQ:PL    1/1:0,33:33:87.23:1094,87,0
12    123875525    rs28681105    T    C    157.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537270    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
12    123879445    rs28592032    C    T    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462311    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    123880862    rs28410096    T    C    1123.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330479    GT:AD:DP:GQ:PL    1/1:0,34:34:84.28:1157,84,0
12    123900136    rs1662    G    A    33.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.39;ReadPosRankSum=1.026;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RILPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280571    GT:AD:DP:GQ:PL    0/1:2,2:4:59.97:64,0,60
12    123914888    rs61953486    A    G    270.42    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.261;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.93;MQ0=0;MQRankSum=-0.104;QD=8.72;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RILPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280571    GT:AD:DP:GQ:PL    0/1:16,15:31:99:300,0,532
12    123983941    rs9697264    G    A    1296.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=3.5877;MQ=56.55;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RILPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340724    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1330,105,0
12    124008073    rs2292500    A    G    777.28    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.958;DB;DP=71;Dels=0.0;FS=2.039;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.059;QD=10.95;ReadPosRankSum=-0.402;SNPEFF_AMINO_ACID_CHANGE=N143;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124008042_124008192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RILPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376874    GT:AD:DP:GQ:PL    0/1:40,31:71:99:807,0,1136
12    124017850    rs28492040    G    C    78.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.72;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=V60;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124017721_124018265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RILPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376874    GT:AD:DP:GQ:PL    0/1:2,3:5:55.27:109,0,55
12    124069111    rs63022462    GGGC    G    117.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=29.1172;IndelType=D;MQ=58.24;MQ0=0;QD=16.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543425    GT:AD:DP:GQ:PL    1/1:1,6:7:12.04:159,12,0
12    124069213    rs786446    T    C    665.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_AMINO_ACID_CHANGE=L10;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124069078_124069363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262225    GT:AD:DP:GQ:PL    1/1:0,23:23:54.17:699,54,0
12    124071238    .    T    TA    243.12    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.799;DP=19;FS=0.0;HRun=3;HaplotypeScore=41.2311;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.022;QD=12.8;ReadPosRankSum=0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262225    GT:AD:DP:GQ:PL    0/1:11,8:19:99:282,0,306
12    124071507    rs138612010    AT    A    408.54    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=27;FS=0.0;HRun=3;HaplotypeScore=68.6609;IndelType=D;MQ=59.14;MQ0=0;MQRankSum=0.673;QD=15.13;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544188    GT:AD:DP:GQ:PL    0/1:13,14:27:99:448,0,360
12    124074744    rs146936648    C    G    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544188    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
12    124074848    rs78072538    A    T    104.28    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.299;DB;DP=34;Dels=0.03;FS=6.923;HRun=0;HaplotypeScore=10.8174;MQ=53.76;MQ0=0;MQRankSum=0.332;QD=2.98;ReadPosRankSum=0.863;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544188    GT:AD:DP:GQ:PL    0/1:14,19:34:99:134,0,274
12    124075111    rs77895354    A    G    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438031    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
12    124081094    rs16917551    C    T    732.45    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.426;DB;DP=74;Dels=0.0;FS=4.219;HRun=0;HaplotypeScore=2.6622;MQ=59.69;MQ0=0;MQRankSum=-0.52;QD=9.9;ReadPosRankSum=-0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262225    GT:AD:DP:GQ:PL    0/1:45,29:74:99:762,0,1507
12    124090453    rs786436    A    G    1835.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.24;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238146    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1868,150,0
12    124090605    rs4047521    ACT    A    906.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.077;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=189.8645;IndelType=D;MQ=60.21;MQ0=0;MQRankSum=1.012;QD=17.43;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238146    GT:AD:DP:GQ:PL    0/1:26,26:52:99:945,0,1075
12    124090802    rs3850952    G    T    36.39    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=3.03;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238146    GT:AD:DP:GQ:PL    0/1:9,3:12:66.38:66,0,343
12    124097766    rs11057306    A    G    413.44    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.316;DB;DP=38;Dels=0.0;FS=3.029;HRun=0;HaplotypeScore=0.7887;MQ=58.28;MQ0=0;MQRankSum=0.893;QD=10.88;ReadPosRankSum=1.801;SNPEFF_AMINO_ACID_CHANGE=N264S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124097717_124097799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238146    GT:AD:DP:GQ:PL    0/1:24,14:38:99:443,0,723
12    124097824    rs3748268    A    G    245.04    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.431;DB;DP=27;Dels=0.0;FS=2.764;HRun=2;HaplotypeScore=1.9995;MQ=58.27;MQ0=0;MQRankSum=1.186;QD=9.08;ReadPosRankSum=0.647;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536079    GT:AD:DP:GQ:PL    0/1:17,9:27:99:275,0,534
12    124099704    rs35708602    G    C    640.54    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=52;Dels=0.0;FS=1.082;HRun=0;HaplotypeScore=2.9931;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=12.32;ReadPosRankSum=-0.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238146    GT:AD:DP:GQ:PL    0/1:28,24:52:99:671,0,871
12    124099925    rs3748269    T    C    346.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238146    GT:AD:DP:GQ:PL    1/1:0,14:14:33.08:380,33,0
12    124101041    rs56675602    T    G    595.68    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.498;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=59.54;MQ0=0;MQRankSum=0.42;QD=11.91;ReadPosRankSum=1.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228958    GT:AD:DP:GQ:PL    0/1:28,22:50:99:626,0,917
12    124101347    rs6488883    G    C    297.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:331,24,0
12    124102216    rs7137473    G    A    120.04    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.135;QD=10.0;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    0/1:5,7:12:99:150,0,127
12    124102871    rs68163141    T    C    251.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-1.692;QD=10.05;ReadPosRankSum=0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    0/1:15,10:25:99:281,0,442
12    124102889    rs7139162    C    G    271.36    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-1.025;QD=11.31;ReadPosRankSum=-0.146;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    0/1:14,10:24:99:301,0,399
12    124102893    rs71458808    G    A    280.45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=21;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.315;QD=13.35;ReadPosRankSum=-0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    0/1:12,9:21:99:310,0,325
12    124102920    rs34514002    T    C    253.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=24;Dels=0.0;FS=1.685;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.322;QD=10.58;ReadPosRankSum=-0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    0/1:14,10:24:99:284,0,439
12    124103797    rs113882144    A    G    72.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=24.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
12    124103808    rs35867744    G    A    83.26    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=0.727;QD=20.81;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    0/1:1,3:4:23.21:113,0,23
12    124103869    rs11833889    C    T    333.02    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.453;QD=20.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    0/1:5,11:16:99:363,0,160
12    124104049    rs15587    A    G    1383.42    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=3.977;DB;DP=78;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.222;QD=17.74;ReadPosRankSum=0.39;SNPEFF_AMINO_ACID_CHANGE=G437;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124103979_124104271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538744    GT:AD:DP:GQ:PL    0/1:27,51:78:99:1413,0,743
12    124104460    rs7302183    C    G    2061.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=36.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354291    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2094,153,0
12    124104686    rs3204541    G    A    872.94    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.187;DB;DP=44;Dels=0.0;FS=2.958;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.346;QD=19.84;ReadPosRankSum=0.394;SNPEFF_AMINO_ACID_CHANGE=*208;SNPEFF_CODON_CHANGE=tGa/tAa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_12_124104511_124104969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421670    GT:AD:DP:GQ:PL    0/1:18,26:44:99:903,0,551
12    124107015    rs7313628    G    A    244.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238146    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
12    124107495    .    A    T    73.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.31;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238146    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,100
12    124114552    rs36018806    G    A    74.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452159    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
12    124116817    .    T    TA    505.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;DP=59;FS=0.0;HRun=15;HaplotypeScore=836.5087;IndelType=I;MQ=39.27;MQ0=0;MQRankSum=-0.558;QD=8.57;ReadPosRankSum=-2.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228958    GT:AD:DP:GQ:PL    1/1:43,14:59:70.19:548,70,0
12    124116832    .    AG    A    2192.95    PASS    AC=2;AF=1.00;AN=2;DP=79;FS=0.0;HRun=1;HaplotypeScore=920.2176;IndelType=D;MQ=40.2;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228958    GT:AD:DP:GQ:PL    1/1:74,5:79:99:2235,236,0
12    124116838    .    G    A    123.83    QDFilter2    AB=0.289;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.47;DP=83;Dels=0.01;FS=21.676;HRun=8;HaplotypeScore=12.028;MQ=42.04;MQ0=0;MQRankSum=-5.317;QD=1.47;ReadPosRankSum=3.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228958    GT:AD:DP:GQ:PL    0/1:24,59:83:99:154,0,552
12    124132366    rs185459622    T    A    101.60    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.398;QD=9.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GTF2H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228955    GT:AD:DP:GQ:PL    0/1:4,7:11:99:132,0,136
12    124139597    rs4930737    A    G    473.06    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.023;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.673;QD=16.9;ReadPosRankSum=-0.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GTF2H3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537368    GT:AD:DP:GQ:PL    0/1:12,16:28:99:503,0,384
12    124144395    rs1051793    A    G    2275.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.69;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=P132;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124144342_124144477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GTF2H3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543154    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2309,187,0
12    124155733    rs78846567    C    A    85.37    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_12_124155660_124155869;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    0/1:1,5:6:19.34:115,0,19
12    124155971    rs188213471    C    T    208.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    0/1:6,9:15:99:239,0,190
12    124156487    rs12817757    C    T    444.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:478,39,0
12    124158080    rs7978447    A    G    613.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:646,51,0
12    124158450    rs7953596    T    C    564.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541523    GT:AD:DP:GQ:PL    1/1:0,18:18:51.13:597,51,0
12    124158455    rs7953599    T    C    658.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=36.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541523    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:692,51,0
12    124158502    rs7963498    G    A    277.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541523    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:310,27,0
12    124171323    rs7297576    T    C    917.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=59.17;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,28:28:72.21:950,72,0
12    124171658    rs7309528    C    T    1700.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1734,135,0
12    124171826    rs6488892    T    C    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
12    124172555    rs7298831    A    T    1227.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1261,96,0
12    124172731    rs7313032    G    A    1261.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=51.57;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1294,102,0
12    124172746    rs7302449    T    C    551.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8325;MQ=50.32;MQ0=0;QD=17.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:1,30:31:51.13:585,51,0
12    124172778    rs7302458    T    A    94.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.567;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8305;MQ=43.82;MQ0=0;MQRankSum=1.197;QD=4.11;ReadPosRankSum=0.945;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:3,20:23:12.03:127,12,0
12    124177016    rs35946281    C    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    124177289    rs7137946    T    C    666.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.98;DB;DP=23;Dels=0.0;FS=4.075;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=28.96;ReadPosRankSum=-0.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:1,22:23:17.55:699,18,0
12    124179417    rs7966867    T    C    1537.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.247;DB;DP=51;Dels=0.0;FS=6.488;HRun=4;HaplotypeScore=1.8332;MQ=60.0;MQ0=0;MQRankSum=0.901;QD=30.16;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=P375;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124179389_124179523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426174    GT:AD:DP:GQ:PL    1/1:2,49:51:88.77:1571,89,0
12    124179620    rs12828633    G    A    726.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:759,57,0
12    124179739    rs12831081    A    G    2406.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=59.7;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2440,202,0
12    124180011    rs11834492    T    C    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
12    124181049    rs7298440    C    T    1874.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1908,138,0
12    124181820    rs7979528    A    G    587.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:620,51,0
12    124184065    rs11613632    G    A    110.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
12    124184482    rs73219037    G    C    313.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:346,27,0
12    124192415    rs12811354    G    A    71.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543998    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
12    124197099    rs1139320    C    T    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
12    124197280    rs66647364    A    C    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TCTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303372    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
12    124207098    rs7301641    T    C    74.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=9.34;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330342    GT:AD:DP:GQ:PL    0/1:4,4:8:99:105,0,144
12    124209332    rs1139789    T    C    2076.20    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.576;DB;DP=150;Dels=0.0;FS=3.335;HRun=0;HaplotypeScore=1.7885;MQ=59.23;MQ0=0;MQRankSum=-0.386;QD=13.84;ReadPosRankSum=0.616;SNPEFF_AMINO_ACID_CHANGE=N12;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124207757_124209338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504192    GT:AD:DP:GQ:PL    0/1:77,73:150:99:2106,0,2258
12    124209352    rs11837144    C    T    1778.63    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=5.627;DB;DP=134;Dels=0.0;FS=0.77;HRun=1;HaplotypeScore=1.6828;MQ=59.14;MQ0=0;MQRankSum=0.231;QD=13.27;ReadPosRankSum=-1.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330342    GT:AD:DP:GQ:PL    0/1:69,65:134:99:1809,0,1908
12    124210782    rs1399961    T    C    366.46    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.782;QD=9.9;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=S157;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124210744_124210832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330342    GT:AD:DP:GQ:PL    0/1:21,16:37:99:396,0,640
12    124218359    rs10744159    T    G    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.99;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330342    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,143
12    124220055    rs2271660    T    C    396.83    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=2.171;QD=13.68;ReadPosRankSum=-1.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330342    GT:AD:DP:GQ:PL    0/1:13,16:29:99:427,0,423
12    124229429    rs7135542    T    C    575.25    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=39;Dels=0.0;FS=4.803;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=2.563;QD=14.75;ReadPosRankSum=-3.186;SNPEFF_AMINO_ACID_CHANGE=N505;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124229429_124229519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330342    GT:AD:DP:GQ:PL    0/1:17,22:39:99:605,0,570
12    124267638    rs11057354    A    G    901.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=29.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    1/1:0,31:31:75.22:934,75,0
12    124289636    rs74898832    C    T    179.51    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=13.81;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:7,6:13:99:210,0,252
12    124315342    .    AT    A    667.22    PASS    AC=2;AF=1.00;AN=2;DP=30;FS=0.0;HRun=2;HaplotypeScore=290.0727;IndelType=D;MQ=53.52;MQ0=0;QD=22.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    1/1:23,7:30:86.50:709,86,0
12    124317416    rs4930731    A    G    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
12    124319864    rs4930730    T    G    1394.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1428,114,0
12    124325977    rs4930729    T    G    5851.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.313;MQ=59.75;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=L1631V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124325869_124326092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    1/1:0,183:183:99:5852,448,0
12    124330311    rs34934281    C    T    1456.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.096;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=59.53;MQ0=0;MQRankSum=1.221;QD=13.48;ReadPosRankSum=0.297;SNPEFF_AMINO_ACID_CHANGE=T1724M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124330147_124330416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:53,53:108:99:1486,0,1347
12    124330440    rs4930728    G    A    1779.97    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.356;DB;DP=141;Dels=0.0;FS=5.288;HRun=0;HaplotypeScore=3.0101;MQ=60.0;MQ0=0;MQRankSum=1.313;QD=12.62;ReadPosRankSum=0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:80,61:141:99:1810,0,2457
12    124332702    rs10846561    A    G    1037.42    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=75;Dels=0.0;FS=10.043;HRun=0;HaplotypeScore=0.6651;MQ=59.44;MQ0=0;MQRankSum=-0.528;QD=13.83;ReadPosRankSum=-0.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:42,33:75:99:1067,0,1298
12    124332868    rs10773040    T    A    39.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.76;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:2,2:4:69.04:69,0,71
12    124333519    rs7960854    C    T    413.52    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=4.053;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.23;MQ0=0;MQRankSum=0.062;QD=13.78;ReadPosRankSum=-0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:16,14:30:99:444,0,448
12    124348943    rs4930727    T    C    225.57    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=18.8;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:5,7:12:99:256,0,169
12    124350360    rs7313897    G    C    491.24    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.516;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.773;QD=24.56;ReadPosRankSum=-1.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:6,14:20:99:521,0,182
12    124350444    rs7314963    C    T    1162.48    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.348;DB;DP=94;Dels=0.0;FS=7.409;HRun=1;HaplotypeScore=1.5782;MQ=59.75;MQ0=0;MQRankSum=-0.888;QD=12.37;ReadPosRankSum=-1.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:49,45:94:99:1192,0,1626
12    124350704    rs10773043    T    C    198.52    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.031;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.722;QD=11.68;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:8,9:17:99:229,0,275
12    124352338    rs10846565    T    G    192.18    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=12.81;ReadPosRankSum=-1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:8,7:15:99:222,0,265
12    124360117    rs10846567    G    T    1120.98    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=68;Dels=0.0;FS=8.822;HRun=1;HaplotypeScore=1.7046;MQ=59.73;MQ0=0;MQRankSum=2.279;QD=16.48;ReadPosRankSum=-0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:32,36:68:99:1151,0,950
12    124362256    rs113178558    T    TG    335.54    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=27;FS=0.0;HRun=8;HaplotypeScore=80.7816;IndelType=I;MQ=59.26;MQ0=0;MQRankSum=0.29;QD=12.43;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:14,13:27:99:375,0,230
12    124363724    rs72053758    GTGTC    G    398.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=46.3005;IndelType=D;MQ=60.34;MQ0=0;QD=44.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    1/1:1,8:9:27.09:441,27,0
12    124364131    rs1317312    G    C    1174.01    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.469;DB;DP=85;Dels=0.0;FS=2.77;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.399;QD=13.81;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:40,45:85:99:1204,0,1252
12    124364441    rs1882489    T    A    493.96    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3291;MQ=58.41;MQ0=0;MQRankSum=-0.991;QD=11.23;ReadPosRankSum=0.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:26,18:44:99:524,0,878
12    124366150    rs34756279    CT    C    164.15    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.042;DB;DP=23;FS=0.0;HRun=13;HaplotypeScore=93.8007;IndelType=D;MQ=55.86;MQ0=0;MQRankSum=-0.733;QD=7.14;ReadPosRankSum=-1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:8,12:23:99:203,0,144
12    124393697    rs6488910    G    T    158.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-2.054;QD=17.58;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:3,6:9:96.45:188,0,96
12    124399155    rs79478560    G    A    658.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542348    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:691,54,0
12    124399550    rs1316952    T    C    400.50    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.807;DB;DP=34;Dels=0.0;FS=5.902;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.565;QD=11.78;ReadPosRankSum=-1.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542348    GT:AD:DP:GQ:PL    0/1:14,20:34:99:430,0,385
12    124409502    rs7133378    G    A    289.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=16.1;ReadPosRankSum=-0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514254    GT:AD:DP:GQ:PL    0/1:8,10:18:99:320,0,228
12    124414098    rs3802999    C    T    716.71    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=3.221;DB;DP=54;Dels=0.0;FS=5.565;HRun=0;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=0.135;QD=13.27;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:31,23:54:99:747,0,876
12    124416054    rs61953572    T    C    625.04    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.292;DB;DP=44;Dels=0.0;FS=2.736;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.799;QD=14.21;ReadPosRankSum=-1.128;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238156    GT:AD:DP:GQ:PL    0/1:23,21:44:99:655,0,812
12    124417889    rs4930721    C    T    303.73    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.03;MQ0=0;MQRankSum=0.029;QD=12.66;ReadPosRankSum=0.79;SNPEFF_AMINO_ACID_CHANGE=S4318;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124417878_124418058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409039    GT:AD:DP:GQ:PL    0/1:10,14:24:99:334,0,308
12    124418472    rs77020228    C    G    148.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.88;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238156    GT:AD:DP:GQ:PL    0/1:5,5:10:99:179,0,180
12    124418674    rs12298484    C    T    322.75    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=32;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.6651;MQ=58.69;MQ0=0;MQRankSum=-1.106;QD=10.09;ReadPosRankSum=1.569;SNPEFF_AMINO_ACID_CHANGE=G153S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124418612_124419531;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10OS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000514254    GT:AD:DP:GQ:PL    0/1:14,18:32:99:353,0,338
12    124419062    rs11057396    A    C    523.72    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;MQRankSum=0.452;QD=14.15;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=P23;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124418612_124419531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH10OS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514254    GT:AD:DP:GQ:PL    0/1:16,21:37:99:554,0,466
12    124419728    rs11057397    C    T    121.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=12.13;ReadPosRankSum=-0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238156    GT:AD:DP:GQ:PL    0/1:5,5:10:99:151,0,176
12    124420076    rs113646068    C    CAGGA    2545.40    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.756;DB;DP=85;FS=2.024;HRun=0;HaplotypeScore=329.627;IndelType=I;MQ=57.36;MQ0=0;MQRankSum=-0.412;QD=29.95;ReadPosRankSum=0.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238156    GT:AD:DP:GQ:PL    0/1:52,32:85:99:2584,0,2465
12    124421453    rs9863    T    C    77.01    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.4;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535556    GT:AD:DP:GQ:PL    0/1:1,4:5:27.28:107,0,27
12    124427306    rs11057401    T    A    559.41    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.875;DB;DP=60;Dels=0.0;FS=2.261;HRun=0;HaplotypeScore=1.933;MQ=59.23;MQ0=0;MQRankSum=-0.486;QD=9.32;ReadPosRankSum=-0.301;SNPEFF_AMINO_ACID_CHANGE=S53C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124427291_124427332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535556    GT:AD:DP:GQ:PL    0/1:35,24:60:99:589,0,1153
12    124427761    rs3833499    T    TA    158.79    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;FS=3.522;HRun=1;HaplotypeScore=21.7889;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=-0.361;QD=17.64;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545037    GT:AD:DP:GQ:PL    0/1:4,5:9:99:198,0,128
12    124428162    rs4930725    T    A    213.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.2;QD=11.85;ReadPosRankSum=0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545037    GT:AD:DP:GQ:PL    0/1:10,8:18:99:243,0,356
12    124799387    rs904647    G    A    117.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM101A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338359    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
12    124810174    rs10846657    G    A    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464377    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
12    124810968    rs1006100    C    T    127.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
12    124824721    rs61519723    C    CGCCGCTGCT    1005.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=131.2228;IndelType=I;MQ=39.62;MQ0=0;QD=67.05;SNPEFF_AMINO_ACID_CHANGE=G1400GAAA;SNPEFF_CODON_CHANGE=ggc/ggAGCAGCGGCc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_12_124824552_124824750;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404121    GT:AD:DP:GQ:PL    1/1:8,6:15:31.35:1048,31,0
12    124825447    rs1702334    A    G    80.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
12    124832492    rs1244064    C    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    124832606    rs1244063    A    G    196.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:229,21,0
12    124834922    rs1244059    T    C    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493859    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
12    124838772    rs1244082    C    G    163.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493859    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:196,15,0
12    124838897    rs1244081    A    G    32.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493859    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
12    124839867    rs870050    A    G    164.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
12    124848137    rs1794956    T    C    1243.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.44;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,41:41:96.26:1277,96,0
12    124856660    rs3741513    T    A    615.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.66;MQ0=0;MQRankSum=1.187;QD=27.99;ReadPosRankSum=-1.004;SNPEFF_AMINO_ACID_CHANGE=T458;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_124856568_124857156;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404121    GT:AD:DP:GQ:PL    1/1:1,21:22:51.15:649,51,0
12    124857234    rs1702329    C    G    475.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:509,42,0
12    124859045    rs2695993    A    G    330.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:364,27,0
12    124859135    rs11057606    G    A    65.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:98,9,0
12    124870239    rs55861018    G    A    882.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:916,69,0
12    124873079    rs7960906    T    G    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
12    124885249    rs2293514    C    T    772.60    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.378;DB;DP=46;Dels=0.0;FS=1.857;HRun=2;HaplotypeScore=1.4972;MQ=59.5;MQ0=0;MQRankSum=0.626;QD=16.8;ReadPosRankSum=0.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    0/1:21,25:46:99:803,0,591
12    124885290    rs2293513    T    C    349.63    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.94;DB;DP=22;Dels=0.0;FS=3.882;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.868;QD=15.89;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    0/1:9,13:22:99:380,0,308
12    124886690    rs2342922    C    T    74.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.69;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:105,0,30
12    124887189    rs906301    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    124911470    rs1244092    A    G    331.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448008    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
12    124915091    rs1244096    T    C    769.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448008    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:803,60,0
12    124934459    rs1147284    C    G    406.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:440,33,0
12    124968349    rs747443    T    C    214.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542565    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:247,18,0
12    124979811    rs148141514    G    A    217.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542565    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
12    124979833    rs872224    C    G    164.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_124979693_124979914;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356219    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
12    125284748    rs5888    A    G    279.16    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.67;MQ0=0;MQRankSum=2.005;QD=7.98;ReadPosRankSum=-1.699;SNPEFF_AMINO_ACID_CHANGE=A250;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125284670_125284788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376788    GT:AD:DP:GQ:PL    0/1:23,12:35:99:309,0,816
12    125396165    rs71901580    T    TA    88.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=20;HaplotypeScore=177.0718;IndelType=I;MQ=39.78;MQ0=0;QD=6.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339647    GT:AD:DP:GQ:PL    1/1:6,6:13:20.48:130,20,0
12    125396653    rs111913856    A    G    285.55    MQFilter40;QDFilter2    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=12.43;MQ0=129;MQRankSum=-1.376;QD=1.63;ReadPosRankSum=0.626;SNPEFF_AMINO_ACID_CHANGE=I175;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125396192_125396726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538617    GT:AD:DP:GQ:PL    0/1:114,60:175:99:316,0,550
12    125397750    rs7137123    A    G    1564.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.39;MQ0=8;QD=27.44;SNPEFF_AMINO_ACID_CHANGE=S114P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125396194_125397813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541046    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1597,129,0
12    125398517    rs2070628    G    A    163.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_125398515_125398625;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535131    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
12    125435140    rs35498490    G    A    33.38    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=1.001;QD=3.34;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:7,3:10:63.37:63,0,189
12    125438616    rs11831506    A    C    369.27    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.971;DB;DP=35;Dels=0.0;FS=1.402;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.971;QD=10.55;ReadPosRankSum=0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:19,16:35:99:399,0,560
12    125438712    rs11829165    C    A    364.17    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=24;Dels=0.0;FS=6.545;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.217;QD=15.17;ReadPosRankSum=0.837;SNPEFF_AMINO_ACID_CHANGE=R620;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125438633_125438757;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544745    GT:AD:DP:GQ:PL    0/1:11,13:24:99:394,0,280
12    125441159    rs7973725    T    C    327.08    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.416;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=11.68;ReadPosRankSum=-0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:16,12:28:99:357,0,579
12    125441182    rs12298675    A    G    365.46    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.142;DB;DP=38;Dels=0.0;FS=1.535;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.046;QD=9.62;ReadPosRankSum=0.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:22,16:38:99:395,0,653
12    125441359    rs10773127    T    C    483.49    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.539;DB;DP=47;Dels=0.0;FS=6.129;HRun=0;HaplotypeScore=2.5659;MQ=59.13;MQ0=0;MQRankSum=0.226;QD=10.07;ReadPosRankSum=-0.914;SNPEFF_AMINO_ACID_CHANGE=T564;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125441237_125441425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544745    GT:AD:DP:GQ:PL    0/1:27,20:47:99:513,0,826
12    125441542    rs11832114    G    T    459.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DB;DP=27;Dels=0.0;FS=2.378;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.133;QD=17.01;ReadPosRankSum=0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:9,18:27:99:489,0,222
12    125441856    rs11057932    G    A    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:70,6,0
12    125444975    rs4765007    T    C    346.59    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.963;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=58.81;MQ0=0;MQRankSum=-0.416;QD=6.8;ReadPosRankSum=-1.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543962    GT:AD:DP:GQ:PL    0/1:35,16:51:99:377,0,1186
12    125449312    rs35595461    C    T    69.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.83;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:2,3:5:66.50:99,0,66
12    125451277    rs56213993    T    C    440.19    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.342;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=16.3;ReadPosRankSum=-1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:12,15:27:99:470,0,328
12    125451767    rs60252902    G    A    56.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=12;Dels=0.0;FS=8.195;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=4.67;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:8,4:12:86.02:86,0,265
12    125452777    rs7489105    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
12    125452895    rs10846793    T    C    137.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:170,12,0
12    125453232    rs10773130    A    G    1879.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1913,165,0
12    125453235    rs11057940    C    A    2023.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2056,156,0
12    125456004    rs4542508    C    A    186.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=23.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:219,18,0
12    125456048    rs73229579    A    T    84.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=21.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:114,0,29
12    125456911    rs6488966    A    G    175.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:209,18,0
12    125457151    rs12320413    T    C    572.45    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.11;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.801;QD=9.7;ReadPosRankSum=0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:32,27:59:99:602,0,910
12    125459817    rs7300408    A    C    129.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
12    125461976    rs33931896    C    T    800.37    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=3.305;DB;DP=72;Dels=0.0;FS=6.746;HRun=1;HaplotypeScore=2.9127;MQ=60.0;MQ0=0;MQRankSum=-1.222;QD=11.12;ReadPosRankSum=-0.45;SNPEFF_AMINO_ACID_CHANGE=E267K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125461888_125462036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:42,29:72:99:830,0,1188
12    125465023    rs4072887    C    T    64.64    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=5.88;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:8,3:11:94.63:95,0,225
12    125466987    rs11057949    C    T    1504.29    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.677;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.55;MQ0=0;MQRankSum=-0.353;QD=14.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:49,54:103:99:1534,0,1688
12    125467158    rs11558556    C    T    1523.83    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.217;DB;DP=107;Dels=0.0;FS=3.495;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.608;QD=14.24;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=M96I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125467057_125467169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:56,51:107:99:1554,0,1820
12    125467238    rs12424339    G    C    441.91    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.665;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.627;QD=13.39;ReadPosRankSum=-0.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DHX37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308736    GT:AD:DP:GQ:PL    0/1:19,14:33:99:472,0,645
12    125497313    rs11057985    C    T    203.76    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=58.2;MQ0=0;MQRankSum=-1.093;QD=15.67;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341446    GT:AD:DP:GQ:PL    0/1:6,7:13:99:234,0,199
12    125509502    rs7303493    C    T    211.25    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=19.2;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341446    GT:AD:DP:GQ:PL    0/1:4,7:11:99:241,0,122
12    125510104    rs1055472    G    A    37.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRI3BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341446    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
12    125560749    rs7306617    T    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:71,0,70
12    125561151    rs12831803    A    G    690.84    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.859;QD=13.03;ReadPosRankSum=-0.821;SNPEFF_AMINO_ACID_CHANGE=I118V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125561037_125561157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    0/1:28,25:53:99:721,0,878
12    125587706    rs7138557    T    C    483.17    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.156;QD=18.58;ReadPosRankSum=0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    0/1:11,15:26:99:513,0,365
12    125591844    rs2297478    C    T    80.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.429;QD=5.35;ReadPosRankSum=0.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418937    GT:AD:DP:GQ:PL    0/1:10,5:15:99:110,0,329
12    125599289    rs111308797    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
12    125599296    rs138594022    G    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
12    125599326    rs58443552    T    G    74.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
12    125603152    rs35814268    C    T    97.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=9.72;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    0/1:6,4:10:99:127,0,182
12    125612839    rs900411    G    A    165.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.33;MQ0=0;MQRankSum=0.421;QD=11.85;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441247    GT:AD:DP:GQ:PL    0/1:7,7:14:99:196,0,246
12    125619308    rs2291248    C    T    253.55    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=17;Dels=0.0;FS=2.216;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=14.91;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    0/1:6,11:17:99:284,0,151
12    125621066    rs12580221    T    C    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538851    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
12    125621419    rs41473449    A    G    462.85    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.108;QD=14.46;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398953    GT:AD:DP:GQ:PL    0/1:12,20:32:99:493,0,217
12    125626535    rs3751181    A    G    516.74    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.699;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.693;QD=12.3;ReadPosRankSum=0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261686    GT:AD:DP:GQ:PL    0/1:20,22:42:99:547,0,538
12    125741193    rs7488948    G    A    317.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.036;QD=14.45;ReadPosRankSum=-0.391;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418253    GT:AD:DP:GQ:PL    0/1:10,12:22:99:348,0,282
12    125834395    rs3803155    T    C    1267.81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.551;DB;DP=80;Dels=0.0;FS=6.74;HRun=0;HaplotypeScore=1.4972;MQ=59.71;MQ0=0;MQRankSum=0.417;QD=15.85;ReadPosRankSum=0.427;SNPEFF_AMINO_ACID_CHANGE=S150;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_125833998_125834889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299308    GT:AD:DP:GQ:PL    0/1:32,48:80:99:1298,0,942
12    126003934    rs964998    T    C    372.82    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.912;DB;DP=24;Dels=0.0;FS=5.226;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.463;QD=15.53;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299308    GT:AD:DP:GQ:PL    0/1:11,13:24:99:403,0,314
12    126068417    rs6489006    T    C    5140.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.947;DB;DP=150;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8658;MQ=59.85;MQ0=0;MQRankSum=-1.432;QD=34.27;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=T433;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_126068397_126068540;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299308    GT:AD:DP:GQ:PL    1/1:1,149:150:99:5140,355,0
12    126128871    rs12305906    T    C    37.45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.358;QD=5.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299308    GT:AD:DP:GQ:PL    0/1:4,3:7:67.44:67,0,90
12    126135195    rs3803152    A    G    176.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=14.68;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM132B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299308    GT:AD:DP:GQ:PL    0/1:6,6:12:99:206,0,171
12    126932624    rs758564    G    A    397.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-944M2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397346    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:430,33,0
12    126932764    rs758565    C    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-944M2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397346    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    126947430    rs1019149    G    T    361.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-944M2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544759    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:394,30,0
12    127229254    rs10847207    A    G    817.41    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.45;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=17.77;ReadPosRankSum=-0.943;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-173C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535118    GT:AD:DP:GQ:PL    0/1:14,32:46:99:847,0,389
12    127229327    rs10773323    T    A    1034.17    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.559;DB;DP=93;Dels=0.0;FS=5.878;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.132;QD=11.12;ReadPosRankSum=-0.004;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-173C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535118    GT:AD:DP:GQ:PL    0/1:57,36:93:99:1064,0,1832
12    127229506    rs10847208    T    C    2316.74    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.217;DB;DP=165;Dels=0.0;FS=1.954;HRun=0;HaplotypeScore=3.7532;MQ=60.0;MQ0=0;MQRankSum=-1.752;QD=14.04;ReadPosRankSum=-0.168;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-173C20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535118    GT:AD:DP:GQ:PL    0/1:86,79:165:99:2347,0,2643
12    128108780    rs3803151    T    C    796.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4983;MQ=33.28;MQ0=6;QD=24.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-351O2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537470    GT:AD:DP:GQ:PL    1/1:0,33:33:69.18:829,69,0
12    129100970    rs1552580    A    G    197.09    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=13.14;ReadPosRankSum=-0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315208    GT:AD:DP:GQ:PL    0/1:8,7:15:99:227,0,288
12    129153986    rs4272850    G    A    801.20    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=1.469;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9155;MQ=60.0;MQ0=0;MQRankSum=1.078;QD=12.72;ReadPosRankSum=0.224;SNPEFF_AMINO_ACID_CHANGE=V444I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129153962_129154105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435159    GT:AD:DP:GQ:PL    0/1:34,29:63:99:831,0,810
12    129178156    rs931416    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315208    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
12    129181701    rs902059    A    G    670.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=37.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315208    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:703,51,0
12    129181810    rs885546    A    G    1018.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_AMINO_ACID_CHANGE=T273;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129181769_129181960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315208    GT:AD:DP:GQ:PL    1/1:0,33:33:78.24:1051,78,0
12    129181834    rs902060    A    G    1029.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=V281;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129181769_129181960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315208    GT:AD:DP:GQ:PL    1/1:0,32:32:78.24:1062,78,0
12    129189591    rs4533104    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315208    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    129189941    rs12424159    G    A    310.95    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=18;Dels=0.0;FS=5.193;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-2.224;QD=17.28;ReadPosRankSum=0.813;SNPEFF_AMINO_ACID_CHANGE=G195R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129189635_129192456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537538    GT:AD:DP:GQ:PL    0/1:7,10:18:99:341,0,177
12    129190021    rs11059841    A    G    612.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=Q221;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129189635_129192456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537538    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:645,51,0
12    129190474    rs3812792    G    A    133.88    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=11;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=12.17;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=A372;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129189635_129192456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537538    GT:AD:DP:GQ:PL    0/1:5,6:11:88.49:164,0,88
12    129278864    rs1059312    A    G    688.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.9;DB;DP=66;Dels=0.0;FS=5.15;HRun=1;HaplotypeScore=1.6498;MQ=58.95;MQ0=0;MQRankSum=0.396;QD=10.43;ReadPosRankSum=-0.557;SNPEFF_AMINO_ACID_CHANGE=F200;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129278718_129278901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544112    GT:AD:DP:GQ:PL    0/1:33,33:66:99:719,0,960
12    129279099    rs35545884    C    T    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266771    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
12    129283711    rs2291350    G    A    891.14    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=4.111;DB;DP=51;Dels=0.0;FS=3.723;HRun=0;HaplotypeScore=2.9119;MQ=59.55;MQ0=0;MQRankSum=-0.778;QD=17.47;ReadPosRankSum=2.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366292    GT:AD:DP:GQ:PL    0/1:22,29:51:99:921,0,515
12    129294333    rs11059927    T    C    94.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266771    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
12    129298468    rs10688448    C    CAATA    536.07    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=73.0933;IndelType=I;MQ=52.14;MQ0=0;MQRankSum=-3.243;QD=29.78;ReadPosRankSum=-1.288;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:13,5:18:99:575,0,491
12    129298735    rs3741613    C    G    4238.29    HaplotypeScoreFilter13    AB=0.157;AC=1;AF=0.50;AN=2;BaseQRankSum=1.65;DB;DP=178;Dels=0.0;FS=0.794;HRun=0;HaplotypeScore=14.4932;MQ=56.48;MQ0=0;MQRankSum=0.563;QD=23.81;ReadPosRankSum=6.494;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:28,150:178:13.95:4238,0,14
12    129298759    rs112020083    C    T    449.16    HaplotypeScoreFilter13    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=2.211;DB;DP=216;Dels=0.0;FS=0.643;HRun=0;HaplotypeScore=16.1987;MQ=55.06;MQ0=0;MQRankSum=2.426;QD=2.08;ReadPosRankSum=-2.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:171,45:216:99:479,0,4140
12    129298777    rs111933142    G    A    30.47    HaplotypeScoreFilter13;QDFilter2    AB=0.889;AC=1;AF=0.50;AN=2;BaseQRankSum=0.207;DB;DP=207;Dels=0.0;FS=7.661;HRun=0;HaplotypeScore=57.2043;MQ=55.05;MQ0=0;MQRankSum=0.237;QD=0.15;ReadPosRankSum=2.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:184,23:207:60.46:60,0,4518
12    129298780    .    G    A    172.97    HaplotypeScoreFilter13;QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.25;DP=210;Dels=0.0;FS=0.798;HRun=0;HaplotypeScore=55.3167;MQ=55.01;MQ0=0;MQRankSum=0.624;QD=0.82;ReadPosRankSum=-1.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:182,27:210:99:203,0,4518
12    129298799    rs61946216    T    C    1829.06    HaplotypeScoreFilter13    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.333;DB;DP=197;Dels=0.0;FS=2.619;HRun=1;HaplotypeScore=32.3102;MQ=54.79;MQ0=0;MQRankSum=1.711;QD=9.28;ReadPosRankSum=-5.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:87,109:197:99:1859,0,1771
12    129298815    rs111991699    C    G    229.57    HaplotypeScoreFilter13;QDFilter2    AB=0.866;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=187;Dels=0.0;FS=7.405;HRun=0;HaplotypeScore=45.2813;MQ=54.39;MQ0=0;MQRankSum=1.109;QD=1.23;ReadPosRankSum=-0.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:162,25:187:99:260,0,4072
12    129298819    rs3741614    C    T    1283.80    HaplotypeScoreFilter13    AB=0.601;AC=1;AF=0.50;AN=2;BaseQRankSum=5.144;DB;DP=178;Dels=0.0;FS=21.213;HRun=0;HaplotypeScore=44.3655;MQ=54.09;MQ0=0;MQRankSum=-0.644;QD=7.21;ReadPosRankSum=-0.768;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:107,71:178:99:1314,0,2364
12    129298848    rs3741615    G    A    1615.43    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DB;DP=104;Dels=0.0;FS=1.874;HRun=1;HaplotypeScore=7.9359;MQ=56.56;MQ0=0;MQRankSum=2.834;QD=15.53;ReadPosRankSum=2.986;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535272    GT:AD:DP:GQ:PL    0/1:51,53:104:99:1645,0,1258
12    129299385    rs10847697    G    A    1109.16    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=61;Dels=0.0;FS=9.721;HRun=0;HaplotypeScore=2.7419;MQ=59.33;MQ0=0;MQRankSum=-1.303;QD=17.89;ReadPosRankSum=0.44;SNPEFF_AMINO_ACID_CHANGE=D259;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129299320_129299615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266771    GT:AD:DP:GQ:PL    0/1:26,34:61:99:1139,0,804
12    129299446    rs33990080    A    G    1869.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.446;DB;DP=100;Dels=0.0;FS=2.936;HRun=1;HaplotypeScore=1.6609;MQ=59.12;MQ0=0;MQRankSum=1.437;QD=18.69;ReadPosRankSum=-0.508;SNPEFF_AMINO_ACID_CHANGE=V239A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129299320_129299615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266771    GT:AD:DP:GQ:PL    0/1:40,60:100:99:1899,0,1229
12    129299675    rs2306683    C    G    978.10    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=2.822;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7636;MQ=59.07;MQ0=0;MQRankSum=1.501;QD=19.56;ReadPosRankSum=0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266771    GT:AD:DP:GQ:PL    0/1:19,30:50:99:1008,0,584
12    129430128    rs617042    T    C    110.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GLT1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281703    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
12    129467707    rs35993969    A    G    842.10    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.15;DB;DP=62;Dels=0.0;FS=2.037;HRun=2;HaplotypeScore=1.367;MQ=59.4;MQ0=0;MQRankSum=-0.568;QD=13.58;ReadPosRankSum=0.469;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GLT1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281703    GT:AD:DP:GQ:PL    0/1:35,27:62:99:872,0,1119
12    129559557    rs10773594    C    T    1469.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_AMINO_ACID_CHANGE=T259;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_129556270_129559604;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389441    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1503,111,0
12    129566284    rs72499327    AT    A    96.34    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.218;DB;DP=39;FS=1.585;HRun=17;HaplotypeScore=262.2311;IndelType=D;MQ=55.23;MQ0=0;MQRankSum=1.088;QD=2.47;ReadPosRankSum=-0.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389441    GT:AD:DP:GQ:PL    0/1:18,14:39:99:135,0,213
12    129694345    rs10847799    C    T    220.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.67;QD=15.77;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422113    GT:AD:DP:GQ:PL    0/1:6,8:14:99:251,0,109
12    130015535    rs71082733    G    GA    427.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.924;DB;DP=47;FS=0.0;HRun=15;HaplotypeScore=457.6627;IndelType=I;MQ=46.69;MQ0=0;MQRankSum=0.0;QD=9.09;ReadPosRankSum=-1.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422113    GT:AD:DP:GQ:PL    1/1:24,14:47:64.89:469,65,0
12    130185048    rs151244831    A    G    459.31    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=31;Dels=0.0;FS=1.485;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.561;QD=14.82;ReadPosRankSum=0.336;SNPEFF_AMINO_ACID_CHANGE=V92A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_130184355_130185243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422113    GT:AD:DP:GQ:PL    0/1:16,15:31:99:489,0,497
12    130520715    rs4323914    C    T    51.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.948;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=7.35;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-474D1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291374    GT:AD:DP:GQ:PL    0/1:4,3:7:81.41:81,0,101
12    130520717    rs619722    C    T    69.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.948;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.91;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-474D1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291374    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,99
12    130521184    rs611963    G    A    131.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-474D1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291374    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
12    130521207    rs622000    C    T    314.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-474D1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291374    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:347,27,0
12    130521234    rs34472041    C    CAAA    1045.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=200.6493;IndelType=I;MQ=48.88;MQ0=0;QD=43.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-474D1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291374    GT:AD:DP:GQ:PL    1/1:5,13:24:69.09:1088,69,0
12    130521306    rs600949    G    C    2993.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.49;MQ0=0;QD=33.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-474D1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291374    GT:AD:DP:GQ:PL    1/1:1,89:90:99:3026,232,0
12    130521573    rs34011532    T    TG    252.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=3;HaplotypeScore=44.6069;IndelType=I;MQ=57.05;MQ0=0;QD=31.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-474D1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291374    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:294,21,0
12    130521584    rs599914    G    A    223.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-474D1.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291374    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:256,21,0
12    130827271    rs11060834    G    C    122.01    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=11.09;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245255    GT:AD:DP:GQ:PL    0/1:6,5:11:99:152,0,184
12    130830906    rs11060836    C    T    185.63    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=10.92;ReadPosRankSum=1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245255    GT:AD:DP:GQ:PL    0/1:9,8:17:99:216,0,254
12    130832492    rs55887533    G    A    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535956    GT:AD:DP:GQ:PL    0/1:2,2:4:61.89:70,0,62
12    130832597    rs55881231    T    C    255.23    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.435;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=15.95;ReadPosRankSum=-1.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535956    GT:AD:DP:GQ:PL    0/1:7,9:16:99:285,0,237
12    130832922    rs11836499    G    T    77.83    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.46;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535956    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:108,0,30
12    130834602    rs3736333    G    A    115.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535956    GT:AD:DP:GQ:PL    0/1:3,4:7:99:146,0,103
12    130839165    rs10848087    G    A    1225.75    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.865;DB;DP=97;Dels=0.0;FS=1.258;HRun=0;HaplotypeScore=2.8919;MQ=59.76;MQ0=0;MQRankSum=0.466;QD=12.64;ReadPosRankSum=-1.323;SNPEFF_AMINO_ACID_CHANGE=L376;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_130839082_130839208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245255    GT:AD:DP:GQ:PL    0/1:52,45:97:99:1256,0,1610
12    130839645    rs1874521    A    C    530.71    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=59.5;MQ0=0;MQRankSum=-0.216;QD=11.54;ReadPosRankSum=-0.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245255    GT:AD:DP:GQ:PL    0/1:24,22:46:99:561,0,784
12    130839693    rs192119641    T    G    220.23    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.195;QD=10.49;ReadPosRankSum=0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245255    GT:AD:DP:GQ:PL    0/1:13,8:21:99:250,0,464
12    130839924    rs61940167    T    A    240.07    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.222;QD=17.15;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245255    GT:AD:DP:GQ:PL    0/1:6,8:14:99:270,0,195
12    130847389    rs2242363    A    G    300.44    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DB;DP=34;Dels=0.0;FS=5.284;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.063;QD=8.84;ReadPosRankSum=-1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245255    GT:AD:DP:GQ:PL    0/1:21,13:34:99:330,0,620
12    130896997    rs11060868    C    T    149.70    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=18.71;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    0/1:3,5:8:79.49:180,0,79
12    130899033    rs10773780    C    A    110.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=18.37;ReadPosRankSum=1.38;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_130898670_130899255;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536632    GT:AD:DP:GQ:PL    0/1:2,4:6:57.61:140,0,58
12    130899096    rs4759676    G    A    68.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
12    130922870    rs2292665    G    A    70.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
12    130929546    rs10848102    C    G    308.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:341,27,0
12    130929599    rs7952756    A    G    766.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.17;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    1/1:0,25:25:72.16:799,72,0
12    130935710    rs2398519    C    G    1060.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    1/1:0,37:37:87.26:1093,87,0
12    130940993    rs61935897    G    A    159.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.405;QD=9.98;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    0/1:8,8:16:99:190,0,245
12    130941150    rs2277361    G    C    309.26    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DB;DP=28;Dels=0.0;FS=3.558;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.708;QD=11.04;ReadPosRankSum=-1.049;SNPEFF_AMINO_ACID_CHANGE=G66;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_130941041_130941245;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    0/1:15,13:28:99:339,0,517
12    130941338    rs1356081    G    A    64.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.2;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261655    GT:AD:DP:GQ:PL    0/1:4,3:7:94.37:94,0,132
12    131276448    rs4759786    G    T    1168.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=58.71;MQ0=0;QD=32.45;SNPEFF_AMINO_ACID_CHANGE=S287;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_131274145_131276522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261653    GT:AD:DP:GQ:PL    1/1:0,36:36:90.27:1201,90,0
12    131280417    rs1554807    T    C    141.30    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=23.55;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540889    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:171,0,23
12    131280714    rs10848205    T    C    609.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540889    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:643,48,0
12    131280805    rs10773820    G    C    120.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540889    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
12    131280810    rs10773821    G    A    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540889    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
12    131285663    rs1881060    T    C    1417.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=58.89;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261653    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1451,108,0
12    131292977    rs6486600    C    T    370.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261653    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:403,33,0
12    131297313    rs4759521    C    T    412.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261653    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:446,33,0
12    131297348    rs4759794    T    G    914.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261653    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:947,69,0
12    131306314    rs6486602    C    G    1379.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=32.09;SNPEFF_AMINO_ACID_CHANGE=S42T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_131306234_131306333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261653    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1413,102,0
12    131311541    rs28659959    A    G    33.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261653    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
12    131311629    rs112850087    G    A    209.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261653    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:243,21,0
12    131356645    rs11546491    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.19;SNPEFF_AMINO_ACID_CHANGE=G22R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_131356582_131356671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448750    GT:AD:DP:GQ:PL    1/1:2,2:4:6.02:84,6,0
12    131439444    rs1983478    T    C    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
12    131456238    rs4759532    G    A    532.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.6;MQ0=0;QD=31.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543826    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:565,48,0
12    131456252    rs4759533    G    A    372.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.77;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543826    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:406,33,0
12    131466562    rs4759534    T    C    1938.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_AMINO_ACID_CHANGE=Y148;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_131466429_131466608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1971,150,0
12    131471458    rs34095890    C    T    65.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.88;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:3,3:6:95.29:95,0,105
12    131471608    rs1547577    T    C    1282.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1315,99,0
12    131471956    rs2398544    G    A    823.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:856,63,0
12    131472006    rs12826218    G    C    80.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=13.42;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:3,3:6:99:110,0,110
12    131476665    rs72094510;rs72440868    CAAA    C    691.38    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.952;DB;DP=59;FS=0.0;HRun=17;HaplotypeScore=434.4484;IndelType=D;MQ=53.72;MQ0=0;MQRankSum=-1.41;QD=11.72;ReadPosRankSum=1.541;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541143    GT:AD:DP:GQ:PL    0/1:5,30:59:3.70:730,0,4
12    131477075    rs2030880    T    C    99.46    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.333;QD=7.1;ReadPosRankSum=1.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537600    GT:AD:DP:GQ:PL    0/1:9,5:14:99:129,0,316
12    131477080    rs2030881    A    G    386.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=58.05;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537600    GT:AD:DP:GQ:PL    1/1:0,11:12:33.10:419,33,0
12    131485025    rs4759822    A    G    273.50    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.796;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.303;QD=13.02;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:11,10:21:99:303,0,360
12    131487973    rs7301690    A    G    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:2,2:4:61.89:70,0,62
12    131488566    rs10773836    C    T    34.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=29.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
12    131490483    rs35387826    G    A    180.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=14;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=12.92;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:6,8:14:99:211,0,135
12    131490720    rs4759825    T    C    76.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544673    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
12    131498946    rs1212936    C    T    953.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545900    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:987,72,0
12    131498995    rs1195923    G    A    182.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.718;QD=15.23;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545900    GT:AD:DP:GQ:PL    0/1:6,6:12:99:213,0,215
12    131514308    rs10773837    T    C    1656.48    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=250;DS;Dels=0.0;FS=22.141;HRun=0;HaplotypeScore=9.0103;MQ=50.4;MQ0=15;MQRankSum=-4.482;QD=6.63;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:146,103:250:99:1686,0,3948
12    131514390    rs2464294    C    T    5844.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=187;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3919;MQ=52.2;MQ0=16;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    1/1:1,186:187:99:5845,451,0
12    131514426    rs2464293    A    G    1201.84    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.022;DB;DP=141;DS;Dels=0.0;FS=4.845;HRun=3;HaplotypeScore=1.612;MQ=50.89;MQ0=9;MQRankSum=3.188;QD=8.52;ReadPosRankSum=-1.986;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:70,68:141:99:1232,0,1671
12    131514494    rs112089472    A    G    84.04    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=2.996;DB;DP=203;Dels=0.0;FS=38.607;HRun=1;HaplotypeScore=9.8221;MQ=52.4;MQ0=8;MQRankSum=-8.784;QD=0.41;ReadPosRankSum=0.707;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:158,43:203:99:114,0,5028
12    131514673    rs1195889    G    A    1579.32    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=145;Dels=0.0;FS=5.428;HRun=0;HaplotypeScore=5.1969;MQ=59.1;MQ0=2;MQRankSum=1.682;QD=10.89;ReadPosRankSum=-0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:85,60:145:99:1609,0,2356
12    131515013    rs7314800    T    G    77.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.59;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:2,3:5:59.03:108,0,59
12    131555329    rs10744491    C    A    479.57    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.511;DB;DP=33;Dels=0.0;FS=1.845;HRun=1;HaplotypeScore=0.0;MQ=56.36;MQ0=0;MQRankSum=-1.171;QD=14.53;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:18,15:33:99:510,0,512
12    131602811    rs7961434    C    T    237.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=58.45;MQ0=0;MQRankSum=0.766;QD=15.81;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:6,9:15:99:267,0,172
12    131603031    rs7295131    G    A    1022.67    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.624;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.712;QD=15.49;ReadPosRankSum=-0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    0/1:32,34:66:99:1053,0,952
12    131605443    rs11610576    C    T    440.22    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=27;Dels=0.0;FS=6.329;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.22;QD=16.3;ReadPosRankSum=0.268;SNPEFF_AMINO_ACID_CHANGE=A239;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_131605392_131605458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543617    GT:AD:DP:GQ:PL    0/1:12,15:27:99:470,0,316
12    131616141    rs1195939    T    C    109.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
12    131620588    rs868158    A    G    157.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.22;SNPEFF_AMINO_ACID_CHANGE=T277;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_131620582_131620708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543617    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
12    131620738    rs2280683    A    G    152.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=48.05;MQ0=0;QD=25.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261654    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:185,15,0
12    131623850    rs35160436    A    AC    139.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=7;HaplotypeScore=9.1277;IndelType=I;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GPR133;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535015    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:181,15,0
12    131649567    rs7955278    T    C    475.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.53;MQ0=1;QD=27.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-638F5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376678    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:509,45,0
12    131687287    rs7486559    G    C    110.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.6651;MQ=54.08;MQ0=0;QD=22.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-638F5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376678    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:143,12,0
12    131687289    rs12816480    G    C    68.06    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=54.08;MQ0=0;MQRankSum=0.731;QD=13.61;ReadPosRankSum=0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-638F5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376678    GT:AD:DP:GQ:PL    0/1:1,4:5:25.76:98,0,26
12    131692047    rs55747438    G    A    31.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.55;MQ0=0;MQRankSum=0.358;QD=6.27;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-638F5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376678    GT:AD:DP:GQ:PL    0/1:3,2:5:61.34:61,0,80
12    131692116    rs11061381    T    C    176.67    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.2;MQ0=1;MQRankSum=0.0;QD=16.06;ReadPosRankSum=1.036;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-638F5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376678    GT:AD:DP:GQ:PL    0/1:4,7:11:98.86:207,0,99
12    132195674    rs7134849    A    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFSWAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535399    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
12    132237848    rs1982528    T    C    1149.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=27.36;SNPEFF_AMINO_ACID_CHANGE=L214P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132237668_132237908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFSWAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535236    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1182,105,0
12    132240937    rs3217666    C    CAT    894.21    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.197;DB;DP=50;FS=6.218;HRun=0;HaplotypeScore=147.0124;IndelType=I;MQ=59.04;MQ0=1;MQRankSum=1.379;QD=17.53;ReadPosRankSum=0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFSWAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535202    GT:AD:DP:GQ:PL    0/1:29,21:50:99:933,0,837
12    132241229    rs7136191    A    G    461.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFSWAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535202    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:495,36,0
12    132271113    rs7136643    T    C    255.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_AMINO_ACID_CHANGE=S838;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132271008_132271133;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFSWAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261674    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
12    132281507    rs4964910    A    G    204.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFSWAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261674    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
12    132281933    rs141069885    CTG    C    304.33    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.678;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=55.3586;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=0.578;QD=17.9;ReadPosRankSum=-1.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFSWAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261674    GT:AD:DP:GQ:PL    0/1:9,8:17:99:343,0,440
12    132283560    rs147985401    GCT    G    48.03    QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=114.7462;IndelType=D;MQ=57.25;MQ0=0;MQRankSum=1.021;QD=1.33;ReadPosRankSum=-0.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFSWAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261674    GT:AD:DP:GQ:PL    0/1:31,5:36:87.06:87,0,1341
12    132323082    rs7971187    A    G    64.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360564    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:97,9,0
12    132323089    rs7965611    C    G    197.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360564    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
12    132323294    rs4964884    T    C    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360564    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
12    132324972    rs7484577    T    C    269.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360564    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:303,24,0
12    132325239    rs6598163    G    A    1340.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=A182T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132325118_132325401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360564    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1373,105,0
12    132326051    rs4964929    C    T    557.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545790    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:591,45,0
12    132330043    rs115545070    G    A    103.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=12.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535182    GT:AD:DP:GQ:PL    0/1:2,6:8:67.24:133,0,67
12    132380022    rs73471770    C    A    99.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.48;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321867    GT:AD:DP:GQ:PL    0/1:4,4:8:99:130,0,104
12    132391199    rs10902473    T    G    136.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321867    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:170,15,0
12    132395052    rs7295593    G    C    265.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537421    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:298,24,0
12    132396343    rs11615995    C    T    214.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537421    GT:AD:DP:GQ:PL    1/1:0,6:7:18.06:247,18,0
12    132396603    rs11616018    C    T    491.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=D355;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132396487_132396634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321867    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:525,39,0
12    132399386    rs4964920    A    G    37.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537421    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
12    132401050    rs61731334    C    T    496.74    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.192;DB;DP=35;Dels=0.0;FS=4.041;HRun=0;HaplotypeScore=1.9445;MQ=60.0;MQ0=0;MQRankSum=-1.57;QD=14.19;ReadPosRankSum=-0.121;SNPEFF_AMINO_ACID_CHANGE=P10;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132400488_132401136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541761    GT:AD:DP:GQ:PL    0/1:18,16:35:99:527,0,313
12    132401566    rs11546871    C    T    294.46    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.36;MQ0=0;MQRankSum=-0.68;QD=11.78;ReadPosRankSum=1.278;SNPEFF_AMINO_ACID_CHANGE=P62L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132401498_132401607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541761    GT:AD:DP:GQ:PL    0/1:13,12:25:99:324,0,343
12    132401642    rs7959651    T    C    168.46    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=52.34;MQ0=0;MQRankSum=0.751;QD=18.72;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321867    GT:AD:DP:GQ:PL    0/1:1,8:9:11.20:198,0,11
12    132402020    rs4964918    T    C    86.64    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=45.47;MQ0=0;MQRankSum=1.368;QD=9.63;ReadPosRankSum=2.017;SNPEFF_AMINO_ACID_CHANGE=P749;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132401956_132402099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321867    GT:AD:DP:GQ:PL    0/1:4,5:9:99:117,0,114
12    132402026    rs55770096    G    A    105.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.47;MQ0=0;MQRankSum=0.922;QD=11.67;ReadPosRankSum=1.638;SNPEFF_AMINO_ACID_CHANGE=P751;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132401956_132402099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321867    GT:AD:DP:GQ:PL    0/1:4,5:9:99:135,0,119
12    132403161    rs11609348    A    G    303.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_AMINO_ACID_CHANGE=T164A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132403042_132403226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541761    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:336,27,0
12    132403654    rs56263650    T    G    205.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321867    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
12    132404212    rs7299195    A    G    1123.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=37.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541761    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1157,84,0
12    132404259    rs7296365    C    T    528.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541761    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:561,45,0
12    132405523    rs4964915    T    C    84.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541761    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
12    132414769    rs10902480    G    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322060    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
12    132426631    rs115537571    C    A    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322060    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
12    132427909    rs7961398    A    G    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PUS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322060    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
12    132448288    rs73162974    C    G    314.72    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.279;DB;DP=23;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.899;QD=13.68;ReadPosRankSum=0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:10,13:23:99:345,0,347
12    132498260    rs11831366    T    C    184.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.255;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6308;MQ=59.03;MQ0=0;MQRankSum=-0.888;QD=7.7;ReadPosRankSum=-1.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:16,8:24:99:215,0,523
12    132505556    rs7305807    A    G    449.41    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.118;DB;DP=42;Dels=0.0;FS=4.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=10.7;ReadPosRankSum=-0.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:22,20:42:99:479,0,754
12    132508389    rs7133119    A    G    636.92    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.976;DB;DP=47;Dels=0.0;FS=2.795;HRun=1;HaplotypeScore=0.9983;MQ=59.51;MQ0=0;MQRankSum=1.656;QD=13.55;ReadPosRankSum=-2.113;SNPEFF_AMINO_ACID_CHANGE=P1505;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132508322_132508486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:20,27:47:99:667,0,605
12    132514288    rs58319354    C    G    205.70    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DB;DP=29;Dels=0.0;FS=3.622;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=-1.223;QD=7.09;ReadPosRankSum=0.743;SNPEFF_AMINO_ACID_CHANGE=S1727;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132514246_132514448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:19,10:29:99:236,0,572
12    132514490    rs7315548    C    T    428.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.293;DB;DP=36;Dels=0.0;FS=6.808;HRun=0;HaplotypeScore=2.7874;MQ=58.71;MQ0=0;MQRankSum=0.637;QD=11.91;ReadPosRankSum=0.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542457    GT:AD:DP:GQ:PL    0/1:21,15:36:99:459,0,599
12    132516262    rs7964823    A    G    116.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542457    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:150,15,0
12    132516856    rs59942502    C    T    136.32    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=10.49;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542457    GT:AD:DP:GQ:PL    0/1:7,6:13:99:166,0,247
12    132529368    rs141740536    G    A    168.74    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.309;DB;DP=49;Dels=0.0;FS=6.886;HRun=0;HaplotypeScore=5.8729;MQ=53.03;MQ0=0;MQRankSum=-2.183;QD=3.44;ReadPosRankSum=-1.395;SNPEFF_AMINO_ACID_CHANGE=P2137;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132529345_132529498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:31,18:49:99:199,0,838
12    132529649    rs6598192    T    C    77.50    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=11.07;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:3,4:7:99:107,0,104
12    132537576    rs6422000    A    G    280.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.429;QD=18.69;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542712    GT:AD:DP:GQ:PL    0/1:5,10:15:99:310,0,151
12    132539468    rs12321543    G    A    609.34    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.385;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=15.23;ReadPosRankSum=1.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542712    GT:AD:DP:GQ:PL    0/1:19,21:40:99:639,0,566
12    132547068    rs60930033    G    GGCA    729.63    PASS    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.159;DB;DP=55;FS=1.52;HRun=0;HaplotypeScore=285.3252;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=3.319;QD=13.27;ReadPosRankSum=-1.23;SNPEFF_AMINO_ACID_CHANGE=R2638RQ;SNPEFF_CODON_CHANGE=agg/agGCAg;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_12_132547011_132547246;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:38,17:55:99:769,0,387
12    132547162    rs55938102    G    A    919.58    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=2.499;DB;DP=52;Dels=0.0;FS=4.326;HRun=1;HaplotypeScore=0.0;MQ=57.96;MQ0=0;MQRankSum=1.026;QD=17.68;ReadPosRankSum=0.168;SNPEFF_AMINO_ACID_CHANGE=T2669;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132547011_132547246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP400;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330386    GT:AD:DP:GQ:PL    0/1:21,31:52:99:950,0,473
12    132626668    rs1133690    T    C    924.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=28.88;SNPEFF_AMINO_ACID_CHANGE=Q295R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132626664_132626735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX51;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397333    GT:AD:DP:GQ:PL    1/1:0,31:32:78.22:957,78,0
12    132629900    rs10902498    G    T    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOC4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330579    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
12    132631855    rs11543305    C    T    36.20    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=6.03;ReadPosRankSum=-1.38;SNPEFF_AMINO_ACID_CHANGE=F125;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132631826_132631933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOC4L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330579    GT:AD:DP:GQ:PL    0/1:4,2:6:66.19:66,0,107
12    132633458    rs79736234    G    A    99.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.67;MQ0=1;QD=19.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOC4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541954    GT:AD:DP:GQ:PL    1/1:0,4:5:12.02:132,12,0
12    132633463    rs11246942    C    T    103.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.67;MQ0=1;QD=20.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOC4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541954    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:136,12,0
12    132635521    rs7397057    T    C    197.06    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.682;DB;DP=34;Dels=0.0;FS=1.556;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.251;QD=5.8;ReadPosRankSum=-0.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOC4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541954    GT:AD:DP:GQ:PL    0/1:24,10:34:99:227,0,672
12    132635779    rs12818246    C    T    1796.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=35.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOC4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541954    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1829,141,0
12    132682481    rs12308155    T    G    150.82    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.896;QD=13.71;ReadPosRankSum=0.597;SNPEFF_AMINO_ACID_CHANGE=G141;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132682337_132682504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397325    GT:AD:DP:GQ:PL    0/1:4,7:11:99:181,0,102
12    132682484    rs12306514    A    G    142.54    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=11;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.278;QD=12.96;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=D140;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132682337_132682504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397325    GT:AD:DP:GQ:PL    0/1:4,7:11:99:173,0,104
12    132683663    rs35117555    G    A    36.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.14;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538356    GT:AD:DP:GQ:PL    0/1:3,3:6:66.84:67,0,78
12    132683690    rs4074046    G    A    190.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=19.09;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538356    GT:AD:DP:GQ:PL    0/1:4,6:10:99:221,0,126
12    132683862    rs6598205    G    A    110.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.04;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538356    GT:AD:DP:GQ:PL    0/1:6,4:10:99:140,0,168
12    132685566    rs7953158    C    T    78.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.6;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538356    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:108,0,28
12    132685826    rs11246988    T    C    399.33    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.775;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=56.66;MQ0=0;MQRankSum=-0.567;QD=14.79;ReadPosRankSum=1.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542942    GT:AD:DP:GQ:PL    0/1:11,16:27:99:429,0,304
12    132685837    rs10794457    A    G    276.40    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.141;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.45;MQ0=0;MQRankSum=-1.902;QD=13.82;ReadPosRankSum=0.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542942    GT:AD:DP:GQ:PL    0/1:7,13:20:99:306,0,238
12    132688137    rs7486927    A    G    121.04    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=5.5;ReadPosRankSum=-1.29;SNPEFF_AMINO_ACID_CHANGE=Y143;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_132688050_132688235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535228    GT:AD:DP:GQ:PL    0/1:16,6:22:99:151,0,551
12    132688279    rs10902510    A    G    208.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=14.91;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328957    GT:AD:DP:GQ:PL    0/1:6,8:14:99:239,0,203
12    132852957    rs28561974    C    A    353.63    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=41;Dels=0.0;FS=5.664;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.751;QD=8.63;ReadPosRankSum=1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328957    GT:AD:DP:GQ:PL    0/1:28,13:41:99:384,0,831
12    132853945    rs138131736    G    A    250.17    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.387;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.897;QD=9.62;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328957    GT:AD:DP:GQ:PL    0/1:14,12:26:99:280,0,408
12    133049363    .    C    T    138.63    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=41.44;MQ0=0;MQRankSum=1.06;QD=7.3;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,9:19:92.83:169,0,93
12    133049411    rs55846656    T    G    382.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=42.97;MQ0=1;QD=18.23;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,21:21:33.08:416,33,0
12    133049469    rs57083553    G    A    35.83    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8119;MQ=31.3;MQ0=1;MQRankSum=-0.747;QD=2.99;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,10:12:17.64:66,0,18
12    133049697    rs150533648    C    G    427.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.95;MQ0=2;QD=23.74;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,17:18:36.09:460,36,0
12    133049871    .    A    G    56.58    MQFilter40    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DP=25;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.9983;MQ=38.33;MQ0=1;MQRankSum=-2.296;QD=2.26;ReadPosRankSum=-0.765;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:17,8:25:86.57:87,0,403
12    133049991    rs189079112    T    C    196.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.2;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
12    133050602    rs111301821    A    G    330.38    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.13;MQ0=2;QD=17.39;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,19:19:33.05:363,33,0
12    133153281    rs10870473    A    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536075    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
12    133158632    rs3751304    C    T    87.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBRSL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261673    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:119,9,0
12    133181425    rs11146964    A    G    39.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=10.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.88;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP13-554M15.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536100    GT:AD:DP:GQ:PL    0/1:3,2:5:69.41:69,0,108
12    133195579    .    CGCGGGGCGCGGGGT    C    402.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DP=12;FS=0.0;HRun=0;HaplotypeScore=161.8664;IndelType=D;MQ=51.64;MQ0=0;MQRankSum=-0.572;QD=33.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:6,6:12:99:441,0,382
12    133195625    rs11146976    G    A    91.57    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.31;MQ0=0;MQRankSum=-1.589;QD=11.45;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:2,6:8:63.17:122,0,63
12    133196596    rs7964634    T    C    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.79;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=T132;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133196586_133196682;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350048    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,111
12    133197449    .    AGCCTGGGACTGACCCGGGCTCTCGAGGGGCCTCTCGTGTGCCCTTGTGACCCCCTTCCCTG    A    901.91    PASS    AC=2;AF=1.00;AN=2;DP=20;FS=0.0;HRun=0;HaplotypeScore=975.596;IndelType=D;MQ=61.12;MQ0=0;QD=45.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    1/1:8,12:20:33.11:944,33,0
12    133201947    rs4883544    T    C    554.14    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=43;Dels=0.0;FS=1.302;HRun=0;HaplotypeScore=0.6651;MQ=59.03;MQ0=0;MQRankSum=1.108;QD=12.89;ReadPosRankSum=0.822;SNPEFF_AMINO_ACID_CHANGE=H153R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133201838_133202002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:22,21:43:99:584,0,631
12    133202004    rs4883543    C    T    674.48    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=2.492;DB;DP=50;Dels=0.0;FS=4.037;HRun=0;HaplotypeScore=0.9665;MQ=59.54;MQ0=0;MQRankSum=-1.693;QD=13.49;ReadPosRankSum=0.428;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:27,23:50:99:704,0,767
12    133202215    rs5745075    G    A    695.32    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.75;DB;DP=56;Dels=0.0;FS=1.097;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.82;QD=12.42;ReadPosRankSum=0.522;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343948    GT:AD:DP:GQ:PL    0/1:32,24:56:99:725,0,882
12    133202428    rs5745073    G    A    226.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=18;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=12.56;ReadPosRankSum=-0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343948    GT:AD:DP:GQ:PL    0/1:10,8:18:99:256,0,326
12    133208886    rs5745023    C    T    195.87    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=20;Dels=0.0;FS=4.506;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.951;QD=9.79;ReadPosRankSum=-1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416953    GT:AD:DP:GQ:PL    0/1:13,7:20:99:226,0,393
12    133208979    rs5745022    T    C    656.32    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.394;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.436;QD=13.96;ReadPosRankSum=0.564;SNPEFF_AMINO_ACID_CHANGE=S2057;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133208901_133209094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535270    GT:AD:DP:GQ:PL    0/1:23,24:47:99:686,0,740
12    133210985    rs5745005    C    T    577.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.494;DB;DP=44;Dels=0.0;FS=2.628;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.251;QD=13.13;ReadPosRankSum=0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:22,22:44:99:608,0,605
12    133212692    rs4883625    T    C    136.86    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.581;QD=9.78;ReadPosRankSum=-0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:8,6:14:99:167,0,288
12    133212737    rs4883624    C    T    396.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:429,33,0
12    133214517    rs5744975    G    A    233.06    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.244;QD=10.59;ReadPosRankSum=0.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542362    GT:AD:DP:GQ:PL    0/1:13,9:22:99:263,0,426
12    133214522    rs5744974    G    C    275.39    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=11.47;ReadPosRankSum=0.381;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542362    GT:AD:DP:GQ:PL    0/1:14,10:24:99:305,0,491
12    133214768    rs5744970    A    G    113    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=2.017;QD=14.13;ReadPosRankSum=-1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542362    GT:AD:DP:GQ:PL    0/1:4,4:8:99:143,0,102
12    133218724    rs5744951    C    T    459.12    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DB;DP=43;Dels=0.0;FS=2.953;HRun=0;HaplotypeScore=0.8941;MQ=59.46;MQ0=0;MQRankSum=-1.602;QD=10.68;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:26,17:43:99:489,0,819
12    133219831    rs5744944    T    C    275.42    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=25;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=1.7882;MQ=59.07;MQ0=0;MQRankSum=-0.89;QD=11.02;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=A1483;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133219810_133219916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535270    GT:AD:DP:GQ:PL    0/1:14,11:25:99:305,0,329
12    133220321    rs4883614    T    A    170.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=17.01;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540987    GT:AD:DP:GQ:PL    0/1:4,6:10:99:200,0,132
12    133220652    rs35552112    A    AG    326.67    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=28;FS=0.0;HRun=1;HaplotypeScore=83.2279;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.319;QD=11.67;ReadPosRankSum=-0.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539006    GT:AD:DP:GQ:PL    0/1:18,10:28:99:366,0,617
12    133220670    rs10870483    G    A    188.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.858;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.112;QD=8.97;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539006    GT:AD:DP:GQ:PL    0/1:14,7:21:99:218,0,496
12    133225446    rs4883538    G    T    678.50    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.316;DB;DP=47;Dels=0.0;FS=7.462;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.995;QD=14.44;ReadPosRankSum=2.707;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503265    GT:AD:DP:GQ:PL    0/1:21,26:47:99:708,0,647
12    133226159    rs4883613    T    C    166.52    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.553;QD=9.25;ReadPosRankSum=-0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:11,7:18:99:197,0,347
12    133226196    rs4883537    G    A    430.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.723;DB;DP=24;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.79;QD=17.92;ReadPosRankSum=1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:10,14:24:99:460,0,296
12    133233705    rs5744889    T    C    1557.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376577    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1590,117,0
12    133234389    rs5744884    CAT    C    1821.30    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=7.066;DB;DP=81;FS=1.198;HRun=0;HaplotypeScore=258.9526;IndelType=D;MQ=60.25;MQ0=0;MQRankSum=1.891;QD=22.49;ReadPosRankSum=1.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320557    GT:AD:DP:GQ:PL    0/1:33,48:81:99:1860,0,1538
12    133235789    rs5744867    A    G    69.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.52;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320574    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,102
12    133236000    rs5744857    C    T    354.88    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=47;Dels=0.0;FS=1.206;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.888;QD=7.55;ReadPosRankSum=1.142;SNPEFF_AMINO_ACID_CHANGE=T1025;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133235881_133236095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535270    GT:AD:DP:GQ:PL    0/1:31,16:47:99:385,0,837
12    133238076    rs5744844    T    C    2454.56    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.852;DB;DP=159;Dels=0.0;FS=4.241;HRun=0;HaplotypeScore=2.4449;MQ=59.45;MQ0=0;MQRankSum=-0.11;QD=15.44;ReadPosRankSum=0.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320574    GT:AD:DP:GQ:PL    0/1:74,85:159:99:2485,0,2169
12    133240782    rs4883592    A    G    227.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.298;QD=9.1;ReadPosRankSum=0.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320574    GT:AD:DP:GQ:PL    0/1:15,10:25:99:258,0,445
12    133242140    rs4883586    A    G    37.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320574    GT:AD:DP:GQ:PL    0/1:2,2:4:67.17:67,0,71
12    133245149    rs5744798    A    G    243.49    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.04;QD=6.41;ReadPosRankSum=2.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535934    GT:AD:DP:GQ:PL    0/1:23,15:38:99:273,0,686
12    133249017    rs5744783    G    A    74.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535934    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,137
12    133249139    rs5744780    T    A    199.07    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=18.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535934    GT:AD:DP:GQ:PL    0/1:4,7:11:99:229,0,129
12    133250118    rs4883555    C    T    606.21    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=36;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=1.7074;MQ=58.74;MQ0=0;MQRankSum=1.172;QD=16.38;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320574    GT:AD:DP:GQ:PL    0/1:15,21:36:99:636,0,439
12    133250442    rs5744774    A    G    303.52    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.609;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.975;QD=11.24;ReadPosRankSum=-0.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320574    GT:AD:DP:GQ:PL    0/1:17,10:27:99:334,0,544
12    133252556    rs4883545    T    C    136.90    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=12;Dels=0.0;FS=11.429;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=11.41;ReadPosRankSum=-1.134;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_133251984_133253084;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535934    GT:AD:DP:GQ:PL    0/1:7,5:12:99:167,0,228
12    133252796    rs4077170    C    G    276.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.057;DB;DP=33;Dels=0.0;FS=1.96;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=-0.21;QD=8.37;ReadPosRankSum=-0.172;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_12_133251984_133253084;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535934    GT:AD:DP:GQ:PL    0/1:22,11:33:99:306,0,766
12    133253310    rs5744757    A    G    177.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=19.74;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539357    GT:AD:DP:GQ:PL    0/1:3,6:9:99:208,0,100
12    133254083    rs5744750    T    C    538.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.231;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=14.96;ReadPosRankSum=-1.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539357    GT:AD:DP:GQ:PL    0/1:18,18:36:99:569,0,565
12    133256904    rs5744738    C    T    377.16    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.391;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.107;QD=17.14;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539357    GT:AD:DP:GQ:PL    0/1:9,13:22:99:407,0,291
12    133272380    rs10781627    G    C    251.04    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=23;Dels=0.0;FS=2.192;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=10.91;ReadPosRankSum=1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455752    GT:AD:DP:GQ:PL    0/1:13,10:23:99:281,0,364
12    133277860    rs142063460    G    A    748.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=72;Dels=0.0;FS=5.291;HRun=0;HaplotypeScore=0.8321;MQ=59.03;MQ0=0;MQRankSum=0.926;QD=10.4;ReadPosRankSum=-0.769;SNPEFF_AMINO_ACID_CHANGE=A142T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133277836_133277955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXMP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317479    GT:AD:DP:GQ:PL    0/1:40,32:72:99:779,0,1211
12    133277983    rs7958567    T    C    757.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455752    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:790,63,0
12    133278075    rs4883610    G    T    59.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=19.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455752    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:92,9,0
12    133281462    rs10007    G    A    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454379    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
12    133294728    rs11147014    C    T    268.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.489;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9328;MQ=58.24;MQ0=0;MQRankSum=1.083;QD=11.2;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-672B3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537262    GT:AD:DP:GQ:PL    0/1:14,10:24:99:299,0,326
12    133295353    rs12423651    C    T    665.42    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.216;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.011;QD=14.79;ReadPosRankSum=0.967;SNPEFF_AMINO_ACID_CHANGE=P242L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133295348_133295752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGAM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317555    GT:AD:DP:GQ:PL    0/1:21,24:45:99:695,0,596
12    133295501    rs11147015    T    C    173.35    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=11.56;ReadPosRankSum=0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-672B3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537262    GT:AD:DP:GQ:PL    0/1:8,7:15:99:203,0,238
12    133304604    rs11147024    C    T    1835.21    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=4.028;DB;DP=121;Dels=0.0;FS=7.017;HRun=0;HaplotypeScore=2.7577;MQ=59.81;MQ0=0;MQRankSum=1.264;QD=15.17;ReadPosRankSum=-0.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439231    GT:AD:DP:GQ:PL    0/1:56,64:121:99:1865,0,1628
12    133304891    rs10870499    T    C    354.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439231    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:387,30,0
12    133306589    rs10781634    C    T    877.45    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=76;Dels=0.0;FS=6.405;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.931;QD=11.55;ReadPosRankSum=0.964;SNPEFF_AMINO_ACID_CHANGE=R658H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133306265_133306856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539605    GT:AD:DP:GQ:PL    0/1:46,30:76:99:907,0,1331
12    133310639    rs117185207    C    T    564.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=55.4;MQ0=0;MQRankSum=1.72;QD=15.68;ReadPosRankSum=-0.769;SNPEFF_AMINO_ACID_CHANGE=R637H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133310602_133310657;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337516    GT:AD:DP:GQ:PL    0/1:12,24:36:99:595,0,189
12    133310887    rs7969633    C    T    599.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535036    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:633,48,0
12    133311888    rs10781636    C    G    533.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535036    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:567,45,0
12    133311944    rs10747081    T    C    1799.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=37.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535036    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1833,135,0
12    133312191    rs10781637    T    C    629.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.78;MQ0=0;QD=28.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545623    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:663,57,0
12    133313337    rs10870504    G    A    142.90    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=10.99;ReadPosRankSum=-1.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545623    GT:AD:DP:GQ:PL    0/1:7,6:13:99:173,0,232
12    133313372    rs7313956    C    A    287.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.915;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=11.51;ReadPosRankSum=0.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545623    GT:AD:DP:GQ:PL    0/1:15,10:25:99:318,0,486
12    133313789    rs7132253    C    G    154.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538637    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
12    133327470    rs7304425    A    T    199.08    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.428;QD=13.27;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337516    GT:AD:DP:GQ:PL    0/1:7,8:15:99:229,0,237
12    133331537    rs1132375    G    A    616.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=44;Dels=0.0;FS=2.709;HRun=0;HaplotypeScore=4.5667;MQ=59.48;MQ0=0;MQRankSum=-1.786;QD=14.02;ReadPosRankSum=-0.012;SNPEFF_AMINO_ACID_CHANGE=H122Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133331261_133331719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337516    GT:AD:DP:GQ:PL    0/1:22,22:44:99:647,0,692
12    133352941    rs58544277    T    TG    172.57    PASS    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=2.608;DB;DP=25;FS=35.304;HRun=0;HaplotypeScore=211.4724;IndelType=I;MQ=42.18;MQ0=0;MQRankSum=-0.428;QD=5.95;ReadPosRankSum=-1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:23,6:25:99:212,0,560
12    133353010    rs56147288    C    T    230.37    MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=0.017;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.97;MQ0=1;MQRankSum=0.667;QD=5.36;ReadPosRankSum=-1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:33,10:43:99:260,0,637
12    133353044    rs7303268    C    A    70.84    MQFilter40;QDFilter2    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.6444;MQ=39.94;MQ0=2;MQRankSum=-0.842;QD=1.65;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:34,9:43:99:101,0,727
12    133353064    rs147191860    G    A    132.47    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=2.49;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7499;MQ=40.45;MQ0=3;MQRankSum=0.83;QD=2.76;ReadPosRankSum=1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:39,9:48:99:162,0,587
12    133353143    rs12370076    G    A    104.62    MQFilter40;QDFilter2    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=0.102;DB;DP=56;Dels=0.0;FS=5.398;HRun=0;HaplotypeScore=4.5591;MQ=32.32;MQ0=4;MQRankSum=-1.666;QD=1.87;ReadPosRankSum=-1.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:37,18:56:99:135,0,206
12    133353168    rs7303430    C    T    370.56    MQFilter40    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=58;Dels=0.0;FS=20.304;HRun=1;HaplotypeScore=4.661;MQ=37.63;MQ0=3;MQRankSum=0.41;QD=6.39;ReadPosRankSum=-1.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:28,30:58:99:401,0,254
12    133354203    rs12371815    C    A    593.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=30;Dels=0.0;FS=3.654;HRun=1;HaplotypeScore=1.8808;MQ=60.0;MQ0=0;MQRankSum=1.166;QD=19.77;ReadPosRankSum=0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:10,20:30:99:623,0,252
12    133354470    rs900444    T    C    154.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=17.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    1/1:0,9:9:18.02:187,18,0
12    133357412    rs2291260    T    C    869.70    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.919;DB;DP=54;Dels=0.0;FS=1.071;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.446;QD=16.11;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=K1185R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133357384_133357500;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:21,32:54:99:900,0,690
12    133360964    rs1009320    G    A    304.86    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=13.86;ReadPosRankSum=-0.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:12,10:22:99:335,0,435
12    133362781    rs10870512    G    C    88.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
12    133363006    rs12823938    G    A    198.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.0;QD=16.54;ReadPosRankSum=1.398;SNPEFF_AMINO_ACID_CHANGE=L1014;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133362925_133363141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:4,8:12:79.02:228,0,79
12    133363264    rs2242294    C    T    814.63    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.117;DB;DP=83;Dels=0.01;FS=1.008;HRun=0;HaplotypeScore=8.8702;MQ=52.71;MQ0=0;MQRankSum=0.331;QD=9.7;ReadPosRankSum=-0.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:42,33:83:99:845,0,1034
12    133363376    rs7976379    G    T    941.48    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=55.73;MQ0=0;MQRankSum=-1.221;QD=14.05;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:29,38:67:99:971,0,945
12    133365497    rs968522    A    C    90.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=36.07;MQ0=0;QD=15.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:123,12,0
12    133365920    rs11147076    G    A    194.88    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=24.36;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:1,7:8:21.16:225,0,21
12    133372395    rs4758905    A    C    1354.82    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.572;DB;DP=94;Dels=0.0;FS=5.186;HRun=0;HaplotypeScore=0.9159;MQ=59.51;MQ0=0;MQRankSum=0.087;QD=14.41;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:46,48:94:99:1385,0,1507
12    133378244    rs149456851    AC    A    405.15    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.187;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=95.0223;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=12.28;ReadPosRankSum=-1.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:22,11:33:99:444,0,688
12    133378440    rs2291258    C    T    448.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.642;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.186;QD=10.67;ReadPosRankSum=0.728;SNPEFF_AMINO_ACID_CHANGE=L571;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133378353_133378555;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:24,18:42:99:478,0,681
12    133385188    rs3741488    A    T    1281.69    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=4.663;DB;DP=83;Dels=0.0;FS=6.799;HRun=1;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=15.44;ReadPosRankSum=0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204726    GT:AD:DP:GQ:PL    0/1:39,44:83:99:1312,0,1183
12    133398342    rs61952772    G    A    40.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.59;MQ0=0;MQRankSum=-2.054;QD=4.49;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537317    GT:AD:DP:GQ:PL    0/1:6,3:9:70.38:70,0,217
12    133398383    .    C    T    44.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.358;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.92;MQ0=0;MQRankSum=-3.419;QD=2.5;ReadPosRankSum=-0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537317    GT:AD:DP:GQ:PL    0/1:12,6:18:74.97:75,0,408
12    133398395    rs11147096    A    G    432.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.92;MQ0=0;QD=24.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537317    GT:AD:DP:GQ:PL    1/1:0,18:18:45.07:466,45,0
12    133398406    rs77502219    G    C    116.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.75;MQ0=0;MQRankSum=-3.599;QD=6.49;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537317    GT:AD:DP:GQ:PL    0/1:10,8:18:99:147,0,311
12    133398421    rs74721187    A    C    211.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.591;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.14;MQ0=0;MQRankSum=-2.955;QD=9.6;ReadPosRankSum=-1.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537317    GT:AD:DP:GQ:PL    0/1:11,11:22:99:241,0,391
12    133398439    rs67470532    CA    C    170.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DB;DP=35;FS=0.0;HRun=21;HaplotypeScore=384.6911;IndelType=D;MQ=47.75;MQ0=0;MQRankSum=-1.552;QD=4.74;ReadPosRankSum=0.822;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537317    GT:AD:DP:GQ:PL    1/1:24,12:35:41.38:213,41,0
12    133417982    rs139018442    T    TAA    453.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=23.9452;IndelType=I;MQ=57.9;MQ0=0;QD=50.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535527    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:495,27,0
12    133423866    rs10747087    G    A    258.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502279    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
12    133428242    rs2306541    G    A    841.96    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.19;DB;DP=72;Dels=0.0;FS=4.176;HRun=0;HaplotypeScore=0.8941;MQ=59.68;MQ0=0;MQRankSum=-0.501;QD=11.69;ReadPosRankSum=-1.019;SNPEFF_AMINO_ACID_CHANGE=A119V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133428204_133428323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537522    GT:AD:DP:GQ:PL    0/1:38,34:72:99:872,0,1164
12    133428466    rs7134338    G    A    194.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511001    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:228,18,0
12    133433173    rs2062163    T    C    3410.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7356;MQ=59.37;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=R182;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_12_133433054_133433216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541228    GT:AD:DP:GQ:PL    1/1:0,102:103:99:3410,268,0
12    133433240    rs11147110    C    T    679.38    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=69;Dels=0.0;FS=2.782;HRun=0;HaplotypeScore=1.4942;MQ=59.67;MQ0=0;MQRankSum=0.661;QD=9.85;ReadPosRankSum=-2.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535897    GT:AD:DP:GQ:PL    0/1:44,25:69:99:709,0,1416
12    133433300    rs11147111    C    T    317.39    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=4.778;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.36;MQ0=0;MQRankSum=0.33;QD=8.82;ReadPosRankSum=2.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535897    GT:AD:DP:GQ:PL    0/1:23,13:36:99:347,0,655
12    133435449    rs12304978    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535897    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
12    133437981    rs12578891    A    C    432.05    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=29;Dels=0.0;FS=3.163;HRun=0;HaplotypeScore=0.5784;MQ=58.39;MQ0=0;MQRankSum=0.502;QD=14.9;ReadPosRankSum=0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540963    GT:AD:DP:GQ:PL    0/1:15,14:29:99:462,0,503
12    133438274    rs2306542    C    G    35.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.06;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266880    GT:AD:DP:GQ:PL    0/1:3,2:5:65.29:65,0,104
12    133447195    rs12821502    G    A    477.34    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.833;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=58.5;MQ0=0;MQRankSum=-0.879;QD=15.4;ReadPosRankSum=1.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535181    GT:AD:DP:GQ:PL    0/1:14,17:31:99:507,0,330
12    133447242    rs12832244    T    C    649.95    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.349;DB;DP=55;Dels=0.0;FS=6.95;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.059;QD=11.82;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CHFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535181    GT:AD:DP:GQ:PL    0/1:31,24:55:99:680,0,1056
12    133764292    rs7967091    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF268;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228289    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
12    133768210    rs180736651    T    C    1205.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF268;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537973    GT:AD:DP:GQ:PL    1/1:0,40:41:99:1238,102,0
13    19042269    .    G    A    436.19    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.87;MQ0=12;MQRankSum=-0.144;QD=12.12;ReadPosRankSum=0.722;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF962P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443465    GT:AD:DP:GQ:PL    1/1:8,28:36:42.07:469,42,0
13    19042402    rs145813494    C    T    1355.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=32.0;MQ0=4;QD=26.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF962P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443465    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1388,120,0
13    19042463    rs143744297    C    T    3157.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=40.78;MQ0=2;QD=32.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF962P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443465    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3190,244,0
13    19043446    rs71228020    C    T    3073.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.83;MQ0=1;QD=29.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF962P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443465    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3106,262,0
13    19043558    rs9509379    A    C    2682.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.7;MQ0=3;QD=32.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF962P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443465    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2716,211,0
13    19058567    rs1747349    T    A    115.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.37;MQ0=0;QD=28.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF962P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443465    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
13    19058814    rs61959073    A    C    451.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.13;MQ0=1;QD=26.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF962P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443465    GT:AD:DP:GQ:PL    1/1:0,17:17:45.11:484,45,0
13    19240668    rs71428843    T    C    585.72    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.124;DB;DP=52;Dels=0.0;FS=1.104;HRun=2;HaplotypeScore=0.7887;MQ=52.64;MQ0=0;MQRankSum=3.224;QD=11.26;ReadPosRankSum=0.976;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FEM1AP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443167    GT:AD:DP:GQ:PL    0/1:29,23:52:99:616,0,848
13    19240707    rs7999703    C    G    887.81    PASS    AB=0.291;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=55;Dels=0.0;FS=2.566;HRun=2;HaplotypeScore=1.4972;MQ=51.69;MQ0=0;MQRankSum=-1.773;QD=16.14;ReadPosRankSum=1.347;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FEM1AP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443167    GT:AD:DP:GQ:PL    0/1:16,39:55:99:918,0,448
13    19240775    rs7982418    G    A    802.71    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.343;DB;DP=49;Dels=0.0;FS=2.591;HRun=0;HaplotypeScore=2.817;MQ=55.62;MQ0=0;MQRankSum=-0.674;QD=16.38;ReadPosRankSum=1.295;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FEM1AP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443167    GT:AD:DP:GQ:PL    0/1:23,26:49:99:833,0,719
13    19255855    rs4296129    C    G    320.55    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.967;DB;DP=29;Dels=0.0;FS=9.748;HRun=0;HaplotypeScore=0.0;MQ=46.9;MQ0=1;MQRankSum=-4.514;QD=11.05;ReadPosRankSum=0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=TERF1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342224    GT:AD:DP:GQ:PL    0/1:15,14:29:99:351,0,451
13    19384232    rs9580293    G    A    163.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=52.3;MQ0=0;MQRankSum=-1.203;QD=16.34;ReadPosRankSum=1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=NCRNA00328-2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436585    GT:AD:DP:GQ:PL    0/1:3,6:10:84.50:193,0,84
13    19409927    rs35699263    C    CT    572.64    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=73;FS=3.002;HRun=10;HaplotypeScore=238.0888;IndelType=I;MQ=58.69;MQ0=0;MQRankSum=-0.502;QD=7.84;ReadPosRankSum=0.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RHOT1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436571    GT:AD:DP:GQ:PL    0/1:50,23:73:99:612,0,635
13    19414287    rs4037774    G    T    246.19    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=49;Dels=0.0;FS=1.847;HRun=2;HaplotypeScore=0.0;MQ=44.46;MQ0=3;MQRankSum=-5.549;QD=5.02;ReadPosRankSum=-0.637;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457997    GT:AD:DP:GQ:PL    0/1:27,22:49:99:276,0,908
13    19419783    rs74692341    C    G    153.13    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.877;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.21;MQ0=0;MQRankSum=-3.189;QD=5.28;ReadPosRankSum=-0.436;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457997    GT:AD:DP:GQ:PL    0/1:19,10:29:99:183,0,696
13    19419808    rs73435804    G    A    168.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.024;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.07;MQ0=0;MQRankSum=-4.126;QD=4.31;ReadPosRankSum=-0.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457997    GT:AD:DP:GQ:PL    0/1:26,13:39:99:198,0,938
13    19419837    rs71089005    C    CA    245.55    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.087;DB;DP=52;FS=0.0;HRun=9;HaplotypeScore=251.4448;IndelType=I;MQ=49.79;MQ0=0;MQRankSum=-1.785;QD=4.46;ReadPosRankSum=-0.473;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457997    GT:AD:DP:GQ:PL    0/1:45,10:52:99:285,0,578
13    19419847    rs74349552    C    A    191.37    HaplotypeScoreFilter13    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=0.148;DB;DP=56;Dels=0.03;FS=0.0;HRun=9;HaplotypeScore=15.7366;MQ=50.37;MQ0=0;MQRankSum=-4.366;QD=3.3;ReadPosRankSum=0.629;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457997    GT:AD:DP:GQ:PL    0/1:41,15:56:99:221,0,1355
13    19600069    rs4770635    C    T    46.10    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=15;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=1.8997;MQ=57.18;MQ0=0;MQRankSum=-2.647;QD=3.07;ReadPosRankSum=0.934;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PHF2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444553    GT:AD:DP:GQ:PL    0/1:11,3:15:76.09:76,0,357
13    19600126    rs4770636    G    A    63.16    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=27;Dels=0.0;FS=4.869;HRun=2;HaplotypeScore=0.9734;MQ=58.47;MQ0=0;MQRankSum=-1.529;QD=2.34;ReadPosRankSum=-0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PHF2P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444553    GT:AD:DP:GQ:PL    0/1:22,5:27:93.15:93,0,748
13    19600200    rs9511166    C    T    281.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=22;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.317;QD=12.77;ReadPosRankSum=0.88;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-301J16.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,10:22:99:311,0,361
13    19600326    rs9511167    G    C    654.18    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.07;DB;DP=73;Dels=0.0;FS=1.229;HRun=0;HaplotypeScore=0.9469;MQ=55.94;MQ0=0;MQRankSum=-1.0;QD=8.96;ReadPosRankSum=-0.427;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-301J16.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:42,30:73:99:684,0,1409
13    19600475    rs9511168    C    A    1056.35    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=96;Dels=0.0;FS=5.401;HRun=0;HaplotypeScore=1.9512;MQ=52.32;MQ0=2;MQRankSum=-5.306;QD=11.0;ReadPosRankSum=-0.152;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-301J16.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:54,42:96:99:1086,0,1707
13    19600817    rs4770638    T    C    156.10    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=22.3;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-301J16.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,5:7:62.45:186,0,62
13    19601129    rs35887366    TA    T    193.62    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=21;FS=0.0;HRun=8;HaplotypeScore=71.7361;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=9.22;ReadPosRankSum=1.755;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-301J16.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,10:21:99:233,0,266
13    19601182    rs2039524    C    T    244.48    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.74;QD=20.37;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-301J16.2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,9:12:85.09:274,0,85
13    19606506    rs12865916    C    T    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-301J16.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450212    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
13    19705155    rs1555816    A    T    85.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CENPIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425713    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
13    19705243    rs1555817    T    C    152.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CENPIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425713    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:185,15,0
13    19705274    rs1974048    C    T    422.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CENPIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425713    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:455,33,0
13    19752625    rs605109    A    G    871.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360801    GT:AD:DP:GQ:PL    1/1:0,24:24:69.20:904,69,0
13    19753438    rs491873    C    T    1145.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.4;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBA3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360801    GT:AD:DP:GQ:PL    1/1:0,32:33:90.29:1178,90,0
13    19756026    rs783595    C    G    419.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382988    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
13    19756051    rs17076895    G    A    112.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=12.49;ReadPosRankSum=1.159;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382988    GT:AD:DP:GQ:PL    0/1:5,4:9:99:142,0,144
13    19756094    rs36213750    G    A    70.50    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=14.1;ReadPosRankSum=-0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382988    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:100,0,30
13    19761119    rs544117    A    G    303.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382988    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:337,27,0
13    19775652    rs139912088    CA    C    93.58    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=43.2578;IndelType=D;MQ=39.13;MQ0=1;MQRankSum=0.296;QD=7.8;ReadPosRankSum=-0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    0/1:5,7:10:61.45:133,0,61
13    19775755    rs115152530    A    G    939.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.183;DB;DP=37;Dels=0.0;FS=11.663;HRun=2;HaplotypeScore=0.0;MQ=44.81;MQ0=1;MQRankSum=-0.037;QD=25.38;ReadPosRankSum=1.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    1/1:5,32:37:6.19:970,6,0
13    19775867    rs114445450    G    A    577.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    1/1:0,20:20:57.12:610,57,0
13    19775875    rs138429293    T    C    389.95    MQFilter40    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.079;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.61;MQ0=1;MQRankSum=-1.35;QD=22.94;ReadPosRankSum=2.143;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    0/1:3,14:17:24.61:420,0,25
13    19778328    rs9512043    A    C    87.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
13    19778409    rs9512044    G    C    48.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
13    19778557    rs61946465    T    C    89.63    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=16;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=20.92;MQ0=4;MQRankSum=-1.599;QD=5.6;ReadPosRankSum=0.289;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    0/1:6,10:16:99:120,0,107
13    19778601    rs141790008    G    A    99.21    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DB;DP=21;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=22.28;MQ0=4;MQRankSum=3.001;QD=4.72;ReadPosRankSum=-0.184;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    0/1:14,7:21:99:129,0,207
13    19782646    rs9512066    G    A    1779.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=43.83;MQ0=0;QD=29.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    1/1:1,58:60:99:1813,147,0
13    19801420    rs9551255    C    T    1641.49    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=122;Dels=0.0;FS=2.456;HRun=1;HaplotypeScore=1.7262;MQ=48.85;MQ0=3;MQRankSum=2.434;QD=13.45;ReadPosRankSum=-0.576;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    0/1:60,62:122:99:1671,0,1620
13    19801620    rs9507693    C    T    396.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.09;MQ0=3;QD=22.02;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PSPC1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442352    GT:AD:DP:GQ:PL    1/1:1,17:18:36.09:429,36,0
13    19879737    rs1888312    G    A    819.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.169;DB;DP=56;Dels=0.0;FS=9.547;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.703;QD=14.64;ReadPosRankSum=-1.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD26P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454044    GT:AD:DP:GQ:PL    0/1:28,28:56:99:850,0,869
13    19879767    rs1888311    G    A    503.56    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.986;DB;DP=42;Dels=0.0;FS=10.736;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;MQRankSum=0.126;QD=11.99;ReadPosRankSum=1.314;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD26P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454044    GT:AD:DP:GQ:PL    0/1:23,19:42:99:534,0,822
13    19933372    rs4771142    G    A    775.74    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=4.558;DB;DP=58;Dels=0.0;FS=6.193;HRun=1;HaplotypeScore=2.3574;MQ=52.98;MQ0=0;MQRankSum=-0.993;QD=13.37;ReadPosRankSum=-0.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:32,26:58:99:806,0,904
13    19933669    rs2812743    C    A    150.62    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=55.18;MQ0=0;MQRankSum=0.101;QD=11.59;ReadPosRankSum=-0.312;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:7,6:13:99:181,0,239
13    19941233    rs3002090    C    A    2479.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.07;MQ0=0;QD=34.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2512,184,0
13    19943770    rs4112696    A    G    896.56    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=56;Dels=0.0;FS=5.527;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.339;QD=16.01;ReadPosRankSum=0.753;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:24,32:56:99:927,0,725
13    19943926    rs7987428    G    A    652.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=36.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:686,54,0
13    19949155    rs34247662    T    G    77.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:108,0,67
13    19949218    rs35633897    C    T    66.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=7.068;HRun=2;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.32;ReadPosRankSum=-1.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:5,3:8:96.58:97,0,174
13    19949227    rs34936230    C    T    67.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=7.782;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.46;ReadPosRankSum=-1.422;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:6,3:9:97.11:97,0,190
13    19961175    rs2485010    G    A    123.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=24;Dels=0.0;FS=2.671;HRun=3;HaplotypeScore=0.0;MQ=51.51;MQ0=1;MQRankSum=-2.706;QD=5.14;ReadPosRankSum=-1.971;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM58DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428076    GT:AD:DP:GQ:PL    0/1:16,8:24:99:153,0,529
13    19961316    rs2785545    A    G    92.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.22;MQ0=1;MQRankSum=-2.372;QD=5.78;ReadPosRankSum=-1.562;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM58DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428076    GT:AD:DP:GQ:PL    0/1:8,8:16:99:122,0,266
13    19961346    rs12871119    A    G    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM58DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428076    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
13    19969018    rs1977694    T    C    42.94    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=53.61;MQ0=1;MQRankSum=-1.606;QD=2.86;ReadPosRankSum=-0.085;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:11,4:15:72.94:73,0,373
13    19969067    rs1832241    C    T    96.69    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.32;MQ0=1;MQRankSum=1.38;QD=13.81;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:3,4:7:55.40:127,0,55
13    19969463    rs1977696    T    C    214.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
13    19969512    rs1977697    T    C    346.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:379,30,0
13    19969538    rs1977698    A    G    380.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:413,30,0
13    19971865    rs9512947    T    C    35.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:2,2:4:65.45:65,0,66
13    19971903    rs1856017    C    T    238.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:272,21,0
13    19972156    rs9512948    C    T    191.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=19.13;ReadPosRankSum=0.573;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    0/1:3,6:10:96.38:221,0,96
13    19972233    rs9512950    G    T    40.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PARP4P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446672    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
13    19988284    rs1889969    G    A    1531.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.21;MQ0=0;QD=31.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SLC25A15P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457292    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1564,129,0
13    19988302    rs1889970    G    A    1382.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.89;MQ0=0;QD=31.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SLC25A15P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457292    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1415,117,0
13    19999648    rs2497206    T    C    92.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.92;MQ0=0;QD=15.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419256    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:124,9,0
13    19999740    rs4491360    T    C    164.48    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.62;MQ0=2;MQRankSum=0.715;QD=10.28;ReadPosRankSum=1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419256    GT:AD:DP:GQ:PL    0/1:6,10:16:99:194,0,140
13    19999812    rs12860359    T    C    647.60    MQFilter40    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=59;Dels=0.0;FS=5.549;HRun=1;HaplotypeScore=0.9665;MQ=38.21;MQ0=5;MQRankSum=-1.93;QD=10.98;ReadPosRankSum=2.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419256    GT:AD:DP:GQ:PL    0/1:30,29:59:99:678,0,721
13    19999818    rs9579173    T    A    728.54    MQFilter40    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.521;DB;DP=70;Dels=0.0;FS=7.837;HRun=0;HaplotypeScore=0.0;MQ=36.34;MQ0=6;MQRankSum=-1.204;QD=10.41;ReadPosRankSum=1.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419256    GT:AD:DP:GQ:PL    0/1:34,36:70:99:759,0,743
13    19999841    rs2497210    C    A    1741.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.98;MQ0=7;QD=24.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419256    GT:AD:DP:GQ:PL    1/1:0,71:71:99:1775,153,0
13    19999927    rs4544103    T    G    160.98    QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=0.25;DB;DP=82;Dels=0.0;FS=20.572;HRun=2;HaplotypeScore=0.8321;MQ=45.47;MQ0=2;MQRankSum=-3.55;QD=1.96;ReadPosRankSum=-1.021;SNPEFF_AMINO_ACID_CHANGE=R319;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_19999907_19999954;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419256    GT:AD:DP:GQ:PL    0/1:65,17:82:99:191,0,1810
13    19999954    .    T    TGCGAA    297.34    PASS    AB=0.881;AC=1;AF=0.50;AN=2;BaseQRankSum=2.751;DP=67;FS=2.643;HRun=0;HaplotypeScore=334.6819;IndelType=I;MQ=45.27;MQ0=4;MQRankSum=-3.524;QD=4.02;ReadPosRankSum=-1.463;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_13_19999847_19999973;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000343548    GT:AD:DP:GQ:PL    0/1:64,10:67:99:336,0,3565
13    20000066    rs112588776    T    TTTCTA    1012.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=77.5143;IndelType=I;MQ=36.02;MQ0=0;QD=56.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:7,11:17:36.12:1054,36,0
13    20000130    rs2497214    G    T    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=26.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:167,15,0
13    20000191    rs61956963    C    T    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=26.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:167,15,0
13    20000417    rs6491273    C    T    220.22    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.093;QD=16.94;ReadPosRankSum=1.369;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000343548    GT:AD:DP:GQ:PL    0/1:6,7:13:99:250,0,197
13    20000630    rs2497218    T    C    1768.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=30.49;SNPEFF_AMINO_ACID_CHANGE=I333V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20000565_20000657;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400103    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1801,135,0
13    20000702    rs4408395    G    C    849.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:883,66,0
13    20004762    rs7139692    T    C    88.09    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.093;QD=6.78;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    0/1:7,6:13:99:118,0,246
13    20004798    rs2497068    C    T    170.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:204,18,0
13    20006521    rs79266798    A    C    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
13    20006535    rs9554318    C    T    34.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.11;MQ0=1;QD=8.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,4:4:8.95:67,9,0
13    20006536    rs74315640    G    A    34.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.11;MQ0=1;QD=8.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,4:4:8.95:67,9,0
13    20006551    rs76877409    C    T    305.47    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.48;MQ0=2;MQRankSum=1.203;QD=20.36;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:1,14:15:30.07:338,30,0
13    20006777    rs71197102    CTT    C    406.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=17;HaplotypeScore=246.3657;IndelType=D;MQ=42.95;MQ0=3;QD=9.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:9,22:31:61.20:448,61,0
13    20025375    rs4554999    A    G    384.89    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.925;DB;DP=31;Dels=0.0;FS=1.594;HRun=1;HaplotypeScore=0.0;MQ=57.14;MQ0=0;MQRankSum=0.258;QD=12.42;ReadPosRankSum=-0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    0/1:17,14:31:99:415,0,582
13    20038584    rs7339103    A    G    2076.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.38;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2109,160,0
13    20039289    rs2497079    A    T    1224.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,33:33:93.31:1258,93,0
13    20041157    rs2497250    T    A    337.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
13    20041323    rs2497251    G    T    2500.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8939;MQ=36.49;MQ0=4;QD=28.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2534,208,0
13    20041493    rs144627376    TA    T    33.19    QDFilter2    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=0.054;DB;DP=38;FS=0.0;HRun=18;HaplotypeScore=276.3132;IndelType=D;MQ=50.68;MQ0=1;MQRankSum=1.139;QD=0.85;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    0/1:24,8:38:72.22:72,0,84
13    20041563    rs2492391    C    T    412.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.89;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:445,36,0
13    20048218    rs144258896    AAAATAAATAAATAAATAAATAAAT    A    2348.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=874.6096;IndelType=D;MQ=44.6;MQ0=0;QD=42.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:31,24:45:60.21:2390,60,0
13    20066850    rs7987867    G    T    393.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.16;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255310    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:426,33,0
13    20134403    rs7994941    G    T    107.81    MQFilter40    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.07;MQ0=10;MQRankSum=0.747;QD=5.99;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CASC4P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456608    GT:AD:DP:GQ:PL    0/1:5,13:18:15.40:138,0,15
13    20134470    rs7994970    G    A    98.42    MQFilter40    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.69;MQ0=2;MQRankSum=-0.747;QD=7.57;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CASC4P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456608    GT:AD:DP:GQ:PL    0/1:4,9:13:22.63:128,0,23
13    20134473    rs7996979    A    C    97.57    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.86;MQ0=1;MQRankSum=-0.747;QD=8.13;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CASC4P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456608    GT:AD:DP:GQ:PL    0/1:2,10:12:23.22:128,0,23
13    20134821    rs3931989    T    G    52.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=7.47;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CASC4P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456608    GT:AD:DP:GQ:PL    0/1:4,3:7:82.26:82,0,144
13    20134822    rs9508500    T    C    52.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=7.47;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CASC4P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456608    GT:AD:DP:GQ:PL    0/1:4,3:7:82.26:82,0,137
13    20134931    rs2045538    A    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CASC4P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456608    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    20142771    rs9551717    A    T    182.90    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=14.07;ReadPosRankSum=0.696;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=MRPS31P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451581    GT:AD:DP:GQ:PL    0/1:5,8:13:99:213,0,117
13    20216180    rs35022508    G    GT    108.19    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=22;FS=0.0;HRun=16;HaplotypeScore=169.6719;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=0.933;QD=4.92;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360754    GT:AD:DP:GQ:PL    0/1:13,6:22:73.37:147,0,73
13    20222694    .    G    A    135.58    PASS    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360754    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
13    20224138    rs9579581    G    A    79.05    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.325;DB;DP=26;Dels=0.0;FS=1.815;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.257;QD=3.04;ReadPosRankSum=0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360754    GT:AD:DP:GQ:PL    0/1:21,5:26:99:109,0,551
13    20224387    rs9578176    A    G    508.91    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.805;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.215;QD=13.75;ReadPosRankSum=0.48;SNPEFF_AMINO_ACID_CHANGE=A521;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20224143_20224400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361479    GT:AD:DP:GQ:PL    0/1:16,21:37:99:539,0,500
13    20235992    rs9579617    T    C    407.04    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=50;Dels=0.0;FS=9.187;HRun=0;HaplotypeScore=2.5493;MQ=57.75;MQ0=0;MQRankSum=0.55;QD=8.14;ReadPosRankSum=-0.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467481    GT:AD:DP:GQ:PL    0/1:31,19:50:99:437,0,851
13    20240743    rs9508812    T    C    611.73    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.498;DB;DP=54;Dels=0.0;FS=4.891;HRun=0;HaplotypeScore=0.9469;MQ=59.57;MQ0=0;MQRankSum=0.26;QD=11.33;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360754    GT:AD:DP:GQ:PL    0/1:30,24:54:99:642,0,965
13    20244612    rs2125545    C    T    149.43    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.6;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471658    GT:AD:DP:GQ:PL    0/1:4,5:9:99:179,0,121
13    20251791    rs2290810    T    C    117.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.53;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360754    GT:AD:DP:GQ:PL    0/1:2,4:6:63.82:147,0,64
13    20252093    rs9508836    G    A    96.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360754    GT:AD:DP:GQ:PL    0/1:2,4:6:63.50:127,0,64
13    20277413    rs75085951    T    C    181.46    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.045;DB;DP=51;Dels=0.0;FS=10.673;HRun=0;HaplotypeScore=0.0;MQ=42.83;MQ0=0;MQRankSum=-3.535;QD=3.56;ReadPosRankSum=-0.327;SNPEFF_AMINO_ACID_CHANGE=M432V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20277204_20277500;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSPC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422828    GT:AD:DP:GQ:PL    0/1:37,14:51:99:211,0,1084
13    20315957    rs73437133    C    T    154.85    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338910    GT:AD:DP:GQ:PL    0/1:1,5:6:10.59:185,0,11
13    20325160    rs9551994    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338910    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
13    20325238    rs9508872    C    T    78.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338910    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
13    20325625    rs2340650    C    G    177.28    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.659;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=49.23;MQ0=0;MQRankSum=-0.684;QD=8.86;ReadPosRankSum=1.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338910    GT:AD:DP:GQ:PL    0/1:11,9:20:99:207,0,337
13    20356941    rs9508887    T    A    484.72    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.142;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=0.298;QD=11.02;ReadPosRankSum=1.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422828    GT:AD:DP:GQ:PL    0/1:28,16:44:99:515,0,810
13    20356998    rs17086752    A    G    474.82    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.193;DB;DP=25;Dels=0.0;FS=12.27;HRun=0;HaplotypeScore=0.8667;MQ=59.25;MQ0=0;MQRankSum=0.749;QD=18.99;ReadPosRankSum=0.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PSPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422828    GT:AD:DP:GQ:PL    0/1:10,15:25:99:505,0,266
13    20398669    rs9508907    T    C    765    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=H643R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20397993_20399375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZMYM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502168    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:798,63,0
13    20398742    rs9508908    C    T    789.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.47;SNPEFF_AMINO_ACID_CHANGE=V619I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20397993_20399375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZMYM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502168    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:822,60,0
13    20411701    rs7988277    C    T    1381.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.815;DB;DP=102;Dels=0.0;FS=1.62;HRun=0;HaplotypeScore=3.7891;MQ=59.55;MQ0=0;MQRankSum=1.077;QD=13.55;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=R378H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20411605_20411961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZMYM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382905    GT:AD:DP:GQ:PL    0/1:51,51:102:99:1412,0,1486
13    20413021    rs41292167    T    C    2213.11    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=4.699;DB;DP=164;Dels=0.0;FS=3.637;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=0.862;QD=13.49;ReadPosRankSum=1.204;SNPEFF_AMINO_ACID_CHANGE=T221A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20412840_20413125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZMYM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502168    GT:AD:DP:GQ:PL    0/1:86,77:164:99:2243,0,2686
13    20413151    rs61563111    C    A    1244.12    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.845;DB;DP=78;Dels=0.0;FS=1.265;HRun=1;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=-0.307;QD=15.95;ReadPosRankSum=-0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZMYM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337963    GT:AD:DP:GQ:PL    0/1:37,41:78:99:1274,0,1207
13    20425429    rs60968061    CTTT    C    1216.52    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=5.809;DB;DP=61;FS=3.559;HRun=3;HaplotypeScore=261.6225;IndelType=D;MQ=57.07;MQ0=0;MQRankSum=-1.061;QD=19.94;ReadPosRankSum=2.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZMYM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337963    GT:AD:DP:GQ:PL    0/1:35,26:61:99:1256,0,2264
13    20425911    rs9579717    C    A    961.40    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=88;Dels=0.0;FS=1.857;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.92;ReadPosRankSum=-0.663;SNPEFF_AMINO_ACID_CHANGE=C127F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20425829_20426290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZMYM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502168    GT:AD:DP:GQ:PL    0/1:49,39:88:99:991,0,1600
13    20425948    rs9579718    T    C    818.78    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=77;Dels=0.0;FS=1.924;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.522;QD=10.63;ReadPosRankSum=0.315;SNPEFF_AMINO_ACID_CHANGE=I115V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20425829_20426290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZMYM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502168    GT:AD:DP:GQ:PL    0/1:45,32:77:99:849,0,1531
13    20568203    rs7332715    T    A    1053.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:0,29:29:84.23:1086,84,0
13    20601004    rs7981272    T    C    751.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:785,63,0
13    20608354    rs11272380    T    TTTTCTTGAGGTG    10258.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=0;HaplotypeScore=464.0525;IndelType=I;MQ=44.54;MQ0=0;QD=146.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468677    GT:AD:DP:GQ:PL    1/1:1,45:70:99:10259,205,0
13    20608738    rs1543537    A    C    124.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468677    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
13    20625386    rs259792    T    A    222.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=47.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:256,21,0
13    20625393    .    G    GCA    196    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=111.4806;IndelType=I;MQ=48.82;MQ0=0;QD=24.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:2,5:8:20.97:238,21,0
13    20625877    rs1323560    G    A    572.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:606,45,0
13    20632571    rs6490511    T    C    335.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:369,27,0
13    20633470    rs111353386    T    TA    661.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.485;DB;DP=27;FS=0.0;HRun=11;HaplotypeScore=116.4759;IndelType=I;MQ=59.55;MQ0=0;MQRankSum=-0.208;QD=24.49;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:4,22:27:51.91:703,52,0
13    20633834    rs66840096    TC    T    884.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=4;HaplotypeScore=114.4834;IndelType=D;MQ=59.88;MQ0=0;QD=31.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:3,25:28:81.08:926,81,0
13    20640847    rs12859101    C    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:70,0,71
13    20656138    rs66964473    CT    C    1119.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.0;HRun=13;HaplotypeScore=282.7675;IndelType=D;MQ=59.91;MQ0=0;QD=14.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:18,53:75:99:1162,165,0
13    20657188    rs9509028    T    G    1789.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1823,138,0
13    20657286    rs9509029    T    G    384.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:417,30,0
13    20657312    rs9509030    C    G    292.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382869    GT:AD:DP:GQ:PL    1/1:0,8:9:24.08:326,24,0
13    20716533    rs968566    G    T    37.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.57;SNPEFF_AMINO_ACID_CHANGE=L299M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20712394_20717444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000241125    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
13    20716885    rs74607195    G    A    338.94    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=43;Dels=0.0;FS=4.863;HRun=0;HaplotypeScore=0.9734;MQ=59.03;MQ0=0;MQRankSum=-1.201;QD=7.88;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=C181;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_20712394_20717444;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241125    GT:AD:DP:GQ:PL    0/1:27,16:43:99:369,0,687
13    20762956    rs3751385    A    G    399.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382844    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:432,33,0
13    20978664    rs3737036    T    C    415.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.576;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.609;QD=23.1;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298248    GT:AD:DP:GQ:PL    0/1:6,12:18:99:446,0,162
13    20979027    rs7331073    G    A    194.51    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=16.21;ReadPosRankSum=0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298248    GT:AD:DP:GQ:PL    0/1:3,9:12:85.51:225,0,86
13    20979028    rs3818618    C    A    196.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.849;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.849;QD=16.37;ReadPosRankSum=0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298248    GT:AD:DP:GQ:PL    0/1:3,9:12:80.32:226,0,80
13    21006475    rs7983215    T    C    385.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298248    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:419,33,0
13    21013669    rs67447038    AG    A    286.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.108;DB;DP=32;FS=0.0;HRun=1;HaplotypeScore=270.051;IndelType=D;MQ=45.26;MQ0=0;MQRankSum=-0.539;QD=8.96;ReadPosRankSum=1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298248    GT:AD:DP:GQ:PL    1/1:24,8:32:16.94:329,17,0
13    21013995    rs9552182    A    C    230.10    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=16;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=14.38;ReadPosRankSum=-0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298248    GT:AD:DP:GQ:PL    0/1:5,11:16:99:260,0,167
13    21148408    rs4326897    G    A    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.68;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319980    GT:AD:DP:GQ:PL    0/1:3,2:5:68.42:68,0,94
13    21156999    rs9509289    G    A    892.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.03;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319980    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:926,69,0
13    21157257    rs35700311    GA    G    503.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=31.5158;IndelType=D;MQ=60.0;MQ0=0;QD=38.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389373    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:546,39,0
13    21172604    rs3002166    G    C    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319980    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
13    21172938    .    A    C    168.75    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.066;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=2.138;QD=5.27;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319980    GT:AD:DP:GQ:PL    0/1:23,9:32:99:199,0,824
13    21205124    rs35290473    TG    T    1981.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=2;HaplotypeScore=414.6805;IndelType=D;MQ=60.41;MQ0=0;QD=37.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319980    GT:AD:DP:GQ:PL    1/1:1,52:53:99:2023,157,0
13    21205140    rs1329519    A    T    2248.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319980    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2281,174,0
13    21205192    rs9509307    G    A    3025.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=S318N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_21205155_21205241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389374    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3059,226,0
13    21265469    rs139478027    T    C    65.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.29;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482172    GT:AD:DP:GQ:PL    0/1:3,4:7:72.37:95,0,72
13    21331779    rs3924006    T    A    417.74    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.598;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.104;QD=13.92;ReadPosRankSum=0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=N6AMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382754    GT:AD:DP:GQ:PL    0/1:14,16:30:99:448,0,449
13    21331904    rs6490614    A    C    79.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=N6AMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382754    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
13    21358061    rs17318617    A    G    196.52    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=2.057;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.842;QD=5.96;ReadPosRankSum=-1.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255305    GT:AD:DP:GQ:PL    0/1:23,10:33:99:227,0,686
13    21361513    rs4146442    T    C    369.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255305    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:403,30,0
13    21369982    rs2763002    T    C    35.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.9;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255305    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:66,0,69
13    21373135    rs1924599    G    C    169.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.203;QD=18.83;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255305    GT:AD:DP:GQ:PL    0/1:3,6:9:95.70:200,0,96
13    21416945    rs2762995    G    A    325.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255305    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
13    21418094    rs716480    T    G    679.32    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.439;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.36;MQ0=0;MQRankSum=-0.77;QD=18.87;ReadPosRankSum=-0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255305    GT:AD:DP:GQ:PL    0/1:15,21:36:99:709,0,481
13    21442945    rs9509410    G    A    165.12    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.372;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.405;QD=11.01;ReadPosRankSum=-2.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255305    GT:AD:DP:GQ:PL    0/1:8,7:15:99:195,0,256
13    21535423    rs619877    G    C    205.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=38.21;MQ0=2;QD=18.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-569O4.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453800    GT:AD:DP:GQ:PL    1/1:0,11:11:21.05:239,21,0
13    21535586    rs9509472    A    G    2118.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=37.72;MQ0=1;QD=26.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPSAP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454001    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2152,183,0
13    21535705    rs36078026    G    A    2763.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4476;MQ=39.41;MQ0=7;QD=28.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPSAP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454001    GT:AD:DP:GQ:PL    1/1:2,94:96:99:2796,229,0
13    21535837    rs9316041    T    G    2736.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5647;MQ=55.43;MQ0=1;QD=29.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPSAP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454001    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2769,226,0
13    21536403    rs35165372    T    TA    553.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.042;DB;DP=35;FS=0.0;HRun=12;HaplotypeScore=109.8869;IndelType=I;MQ=43.46;MQ0=2;MQRankSum=0.116;QD=11.77;ReadPosRankSum=0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPSAP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454001    GT:AD:DP:GQ:PL    1/1:19,24:35:15.14:595,15,0
13    21549264    rs3742220    G    A    928.55    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=53;Dels=0.0;FS=8.228;HRun=0;HaplotypeScore=1.8824;MQ=59.21;MQ0=0;MQRankSum=0.622;QD=17.52;ReadPosRankSum=1.081;SNPEFF_AMINO_ACID_CHANGE=P1004;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_21547171_21549503;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LATS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382592    GT:AD:DP:GQ:PL    0/1:22,31:53:99:959,0,564
13    21562832    rs2770928    C    T    173.55    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.097;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.356;QD=11.57;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=G363S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_21562020_21563443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LATS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382592    GT:AD:DP:GQ:PL    0/1:8,7:15:99:204,0,196
13    21620085    rs7317471    T    C    2082.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.377;MQ=59.65;MQ0=0;QD=31.56;SNPEFF_AMINO_ACID_CHANGE=K27;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_21619824_21620369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LATS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382592    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2116,163,0
13    21714920    rs2281914    G    A    578.04    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=30;Dels=0.0;FS=6.683;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.603;QD=19.27;ReadPosRankSum=-0.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382533    GT:AD:DP:GQ:PL    0/1:11,19:30:99:608,0,359
13    21720956    rs4620    C    T    912.65    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.972;DB;DP=55;Dels=0.0;FS=6.466;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.955;QD=16.59;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=T84;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_21720944_21721066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382533    GT:AD:DP:GQ:PL    0/1:25,30:55:99:943,0,848
13    21721220    rs3742222    G    C    1421.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.74;MQ0=0;QD=38.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382533    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1455,111,0
13    21729718    rs9506626    G    C    293.50    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.491;QD=17.26;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314759    GT:AD:DP:GQ:PL    0/1:8,9:17:99:323,0,264
13    21729952    rs11446085    T    TAA    706.31    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=0.615;DB;DP=57;FS=4.187;HRun=12;HaplotypeScore=293.1507;IndelType=I;MQ=57.32;MQ0=0;MQRankSum=-0.81;QD=12.39;ReadPosRankSum=-0.726;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314759    GT:AD:DP:GQ:PL    0/1:28,22:57:99:745,0,253
13    21731931    rs3783152    T    C    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465471    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
13    21732028    rs71751537    C    CA    520.22    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=1.702;DB;DP=44;FS=0.0;HRun=15;HaplotypeScore=416.8179;IndelType=I;MQ=46.93;MQ0=0;MQRankSum=-2.324;QD=11.82;ReadPosRankSum=-1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465471    GT:AD:DP:GQ:PL    0/1:17,16:44:10.90:559,0,11
13    21732094    rs4770121    C    T    1965.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=54.61;MQ0=0;QD=29.34;SNPEFF_AMINO_ACID_CHANGE=P362;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_21732061_21732264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314759    GT:AD:DP:GQ:PL    1/1:0,65:67:99:1999,150,0
13    21735998    rs17345690    T    C    241.31    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.596;QD=9.65;ReadPosRankSum=-0.119;SNPEFF_AMINO_ACID_CHANGE=T254A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_21735929_21736014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314759    GT:AD:DP:GQ:PL    0/1:15,10:25:99:271,0,439
13    21736133    rs4561294    C    T    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314759    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
13    21746285    rs7323930    T    C    83.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475251    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:116,9,0
13    21746453    rs2026600    T    C    2906.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SKA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314759    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2939,220,0
13    21751005    rs9550717    G    C    711.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRP63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309594    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:744,60,0
13    21835626    .    G    C    64.78    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.74;MQ0=7;MQRankSum=0.736;QD=4.98;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ESRRAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418437    GT:AD:DP:GQ:PL    0/1:6,7:13:12.65:95,0,13
13    21956272    rs34505526    T    C    58.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=4.92;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320220    GT:AD:DP:GQ:PL    0/1:8,4:12:88.98:89,0,295
13    21987639    rs150090099    T    TACC    580.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=24.3322;IndelType=I;MQ=47.03;MQ0=0;QD=64.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320220    GT:AD:DP:GQ:PL    1/1:1,8:9:27.09:623,27,0
13    22069112    rs1199941    C    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382374    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    22076930    rs3843680    G    C    197.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=32.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480341    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
13    22083998    rs3814795    A    C    215.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468222    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
13    22088361    rs1041021    G    A    288.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382374    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
13    22088733    rs2012875    C    T    165.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382374    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
13    22096843    rs1200028    T    C    754.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382374    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:787,57,0
13    22113669    rs34005684    C    T    116.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=15;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=7.75;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382374    GT:AD:DP:GQ:PL    0/1:10,5:15:99:146,0,363
13    22275193    rs518544    T    C    67.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382353    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
13    22275210    rs519234    T    C    128.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382353    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
13    22275394    rs9509841    A    G    1222.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=29.11;SNPEFF_AMINO_ACID_CHANGE=S149;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_22275329_22278637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382353    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1256,99,0
13    22275583    rs9509842    G    A    1197.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461657    GT:AD:DP:GQ:PL    1/1:0,38:38:90.28:1230,90,0
13    23551901    rs4770358    A    C    870.84    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=1.272;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.045;QD=18.93;ReadPosRankSum=0.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157931.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411184    GT:AD:DP:GQ:PL    0/1:19,27:46:99:901,0,622
13    23551919    rs7986997    C    A    411.70    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=49;Dels=0.0;FS=3.425;HRun=2;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.01;QD=8.4;ReadPosRankSum=2.022;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157931.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411184    GT:AD:DP:GQ:PL    0/1:31,18:49:99:442,0,969
13    23551921    rs7985639    G    A    446.84    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.459;DB;DP=48;Dels=0.0;FS=3.457;HRun=1;HaplotypeScore=0.9159;MQ=59.13;MQ0=0;MQRankSum=0.181;QD=9.31;ReadPosRankSum=1.757;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157931.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411184    GT:AD:DP:GQ:PL    0/1:30,18:48:99:477,0,945
13    23551941    rs4238159    T    C    1893.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=32.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157931.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411184    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1927,138,0
13    23552004    rs7991428    C    T    1620.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=59.53;MQ0=0;QD=33.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157931.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411184    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1653,123,0
13    23552039    rs7996983    T    C    889.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=30.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL157931.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411184    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:923,75,0
13    23824783    rs1800351    T    G    542.18    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.569;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.673;QD=15.06;ReadPosRankSum=0.293;SNPEFF_AMINO_ACID_CHANGE=L104;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23824769_23824856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000218867    GT:AD:DP:GQ:PL    0/1:17,19:36:99:572,0,496
13    23898454    rs9510700    C    T    522.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382292    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:556,42,0
13    23898509    rs1800353    T    C    590.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=L235;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23898507_23899304;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000218867    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:624,45,0
13    23898664    rs1800354    A    G    1041.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.71;SNPEFF_AMINO_ACID_CHANGE=N287S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23898507_23899304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGCG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218867    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1074,81,0
13    23905711    rs2737699    A    G    688.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.015;DB;DP=60;Dels=0.0;FS=5.356;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.26;QD=11.48;ReadPosRankSum=-0.495;SNPEFF_AMINO_ACID_CHANGE=L3352;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23902965_23915829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402364    GT:AD:DP:GQ:PL    0/1:35,25:60:99:719,0,1182
13    23907677    rs2737701    C    T    2267.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=Q2696;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23902965_23915829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402364    GT:AD:DP:GQ:PL    1/1:1,67:68:99:2301,171,0
13    23907909    rs17078605    A    G    524.34    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.789;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.236;QD=14.57;ReadPosRankSum=2.218;SNPEFF_AMINO_ACID_CHANGE=V2619A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23902965_23915829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402364    GT:AD:DP:GQ:PL    0/1:17,19:36:99:554,0,539
13    23908034    rs2737700    A    G    925.46    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.454;DB;DP=73;Dels=0.0;FS=0.934;HRun=1;HaplotypeScore=0.7887;MQ=59.37;MQ0=0;MQRankSum=-0.456;QD=12.68;ReadPosRankSum=1.47;SNPEFF_AMINO_ACID_CHANGE=A2577;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23902965_23915829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402364    GT:AD:DP:GQ:PL    0/1:36,37:73:99:955,0,1042
13    23909162    rs9552929    A    G    495.88    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.734;DB;DP=53;Dels=0.0;FS=2.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=9.36;ReadPosRankSum=2.439;SNPEFF_AMINO_ACID_CHANGE=V2201;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23902965_23915829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402364    GT:AD:DP:GQ:PL    0/1:34,19:53:99:526,0,1141
13    23911820    rs4143768    A    G    533.02    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.919;DB;DP=39;Dels=0.0;FS=1.289;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=13.67;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=I1315;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_23902965_23915829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402364    GT:AD:DP:GQ:PL    0/1:20,19:39:99:563,0,660
13    23945535    rs2766104    T    C    76.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382292    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
13    23985391    rs17078720    T    C    1307.64    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.645;DB;DP=95;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6281;MQ=59.51;MQ0=0;MQRankSum=-1.448;QD=13.76;ReadPosRankSum=1.151;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_23985359_23985652;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SACS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382292    GT:AD:DP:GQ:PL    0/1:46,49:95:99:1338,0,1279
13    24234369    rs3751366    G    T    387.03    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.075;DB;DP=38;Dels=0.0;FS=4.037;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.239;QD=10.18;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248484    GT:AD:DP:GQ:PL    0/1:23,15:38:99:417,0,804
13    24234375    rs3751365    A    T    498.58    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.276;QD=12.16;ReadPosRankSum=-0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248484    GT:AD:DP:GQ:PL    0/1:23,18:41:99:529,0,794
13    24234517    rs3751364    A    G    844.05    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.481;DB;DP=81;Dels=0.0;FS=0.978;HRun=0;HaplotypeScore=1.7287;MQ=58.85;MQ0=0;MQRankSum=0.226;QD=10.42;ReadPosRankSum=1.3;SNPEFF_AMINO_ACID_CHANGE=S208;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24234504_24234629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248484    GT:AD:DP:GQ:PL    0/1:49,32:81:99:874,0,1433
13    24242023    rs3794342    A    G    54.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=9.0;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248484    GT:AD:DP:GQ:PL    0/1:3,3:6:84:84,0,105
13    24242801    rs7329483    A    G    335.56    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.766;DB;DP=33;Dels=0.0;FS=2.17;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-2.044;QD=10.17;ReadPosRankSum=-1.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248484    GT:AD:DP:GQ:PL    0/1:18,15:33:99:366,0,570
13    24243200    rs3751363    T    C    734.37    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.622;DB;DP=66;Dels=0.0;FS=2.232;HRun=0;HaplotypeScore=1.9536;MQ=59.65;MQ0=0;MQRankSum=-0.64;QD=11.13;ReadPosRankSum=-1.177;SNPEFF_AMINO_ACID_CHANGE=G271;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24242831_24243236;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000403372    GT:AD:DP:GQ:PL    0/1:30,36:66:99:764,0,918
13    24334215    rs11620036    T    G    331.69    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.783;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.046;QD=11.85;ReadPosRankSum=-1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382172    GT:AD:DP:GQ:PL    0/1:15,13:28:99:362,0,465
13    24384129    rs9510869    C    T    1037.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382172    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1071,78,0
13    24410278    rs7982516    G    A    2830.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382172    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2863,232,0
13    24411772    rs7333040    T    C    3215.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7214;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_AMINO_ACID_CHANGE=S488G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24411691_24411895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPEP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382172    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3248,238,0
13    24433244    rs9553082    A    G    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382172    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
13    24436475    rs11551114    C    T    70.78    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=28;Dels=0.0;FS=1.946;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.32;QD=2.53;ReadPosRankSum=-0.3;SNPEFF_AMINO_ACID_CHANGE=R340Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24436441_24436501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPEP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382172    GT:AD:DP:GQ:PL    0/1:23,5:28:99:101,0,680
13    24443645    rs74965423    C    T    350.79    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=19;Dels=0.0;FS=4.337;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=18.46;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382172    GT:AD:DP:GQ:PL    0/1:7,12:19:99:381,0,197
13    24465743    rs3864971    A    G    1267.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.73;MQ0=14;QD=20.12;SNPEFF_AMINO_ACID_CHANGE=N229;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24465388_24466200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382137    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1301,111,0
13    24470913    rs7317337    T    G    353.78    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=4.044;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.86;MQ0=4;MQRankSum=-0.995;QD=6.0;ReadPosRankSum=0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382057    GT:AD:DP:GQ:PL    0/1:42,17:59:99:384,0,1216
13    24471039    rs66990269    T    G    770.62    MQFilter40    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=0.293;DB;DP=92;Dels=0.0;FS=17.658;HRun=0;HaplotypeScore=0.0;MQ=29.94;MQ0=12;MQRankSum=-0.403;QD=8.38;ReadPosRankSum=1.536;SNPEFF_AMINO_ACID_CHANGE=G29;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24470960_24471194;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382057    GT:AD:DP:GQ:PL    0/1:57,35:92:99:801,0,1414
13    24471232    rs9510930    A    G    244.38    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.43;MQ0=0;MQRankSum=0.106;QD=15.27;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382140    GT:AD:DP:GQ:PL    0/1:7,9:16:99:274,0,239
13    24515624    rs2765107    G    A    1162.72    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.096;DB;DP=89;Dels=0.0;FS=0.984;HRun=2;HaplotypeScore=0.8667;MQ=59.48;MQ0=0;MQRankSum=1.018;QD=13.06;ReadPosRankSum=-0.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-45B20.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420143    GT:AD:DP:GQ:PL    0/1:48,41:89:99:1193,0,1550
13    24515740    rs9553115    G    A    878.72    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.52;DB;DP=79;Dels=0.0;FS=6.952;HRun=0;HaplotypeScore=0.9983;MQ=59.71;MQ0=0;MQRankSum=1.106;QD=11.12;ReadPosRankSum=0.167;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-45B20.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420143    GT:AD:DP:GQ:PL    0/1:49,30:79:99:909,0,1694
13    24797913    rs1220546    C    T    571.37    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.752;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=13.94;ReadPosRankSum=0.743;SNPEFF_AMINO_ACID_CHANGE=D282;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24796957_24798720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382108    GT:AD:DP:GQ:PL    0/1:21,20:41:99:601,0,533
13    24823928    rs80073311    T    C    1020.08    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.809;DB;DP=59;Dels=0.0;FS=2.337;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.878;QD=17.29;ReadPosRankSum=1.595;SNPEFF_AMINO_ACID_CHANGE=V31A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24823615_24823980;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382095    GT:AD:DP:GQ:PL    0/1:26,33:59:99:1050,0,745
13    24825754    rs17080537    C    T    426.42    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;MQRankSum=-0.137;QD=17.06;ReadPosRankSum=-0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474317    GT:AD:DP:GQ:PL    0/1:11,14:25:99:456,0,304
13    24844856    rs2861550    T    C    65.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=7.33;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382095    GT:AD:DP:GQ:PL    0/1:6,3:9:95.96:96,0,219
13    24853063    .    CCTCT    C    70.29    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DP=8;FS=0.0;HRun=0;HaplotypeScore=102.9466;IndelType=D;MQ=54.73;MQ0=0;MQRankSum=-0.684;QD=8.79;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488060    GT:AD:DP:GQ:PL    0/1:1,7:8:99:109,0,109
13    24858102    rs141081431    A    T    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343003    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
13    24858127    rs17380388    T    C    69.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.956;QD=8.7;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343003    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,182
13    24860240    rs9507300    A    G    966.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343003    GT:AD:DP:GQ:PL    1/1:0,32:32:87.22:1000,87,0
13    24868752    rs34017703    TA    T    385.66    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.47;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=37.6958;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=-0.935;QD=29.67;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343003    GT:AD:DP:GQ:PL    0/1:1,12:13:5.87:424,0,6
13    24869025    rs7993660    A    G    1017.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343003    GT:AD:DP:GQ:PL    1/1:0,29:29:81.23:1050,81,0
13    24869048    rs9553233    T    C    354.21    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.739;DB;DP=23;Dels=0.0;FS=8.098;HRun=3;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.4;QD=15.4;ReadPosRankSum=-0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPATA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343003    GT:AD:DP:GQ:PL    0/1:11,12:23:99:384,0,387
13    24890337    rs9511193    C    G    165.13    MQFilter40    AB=0.063;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.51;MQ0=6;MQRankSum=-0.751;QD=10.32;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422229    GT:AD:DP:GQ:PL    0/1:1,15:16:18.27:195,0,18
13    24890339    rs9511194    A    G    142.56    MQFilter40    AB=0.067;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.18;MQ0=6;MQRankSum=0.747;QD=9.5;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422229    GT:AD:DP:GQ:PL    0/1:1,14:15:21.95:173,0,22
13    24890354    rs28661531    C    A    175.65    MQFilter40    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.52;MQ0=4;MQRankSum=-0.751;QD=12.55;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422229    GT:AD:DP:GQ:PL    0/1:1,13:14:18.94:206,0,19
13    24890385    rs9511196    A    G    280.55    MQFilter40    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.55;MQ0=2;MQRankSum=-1.044;QD=21.58;ReadPosRankSum=1.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422229    GT:AD:DP:GQ:PL    0/1:1,12:13:7.70:310,0,8
13    24892820    rs3864972    T    C    58.64    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.479;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.27;MQ0=0;MQRankSum=1.109;QD=4.89;ReadPosRankSum=-0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422229    GT:AD:DP:GQ:PL    0/1:9,3:12:88.63:89,0,326
13    24892841    rs9580939    G    C    380.14    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=2.366;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9832;MQ=54.11;MQ0=0;MQRankSum=-0.296;QD=21.12;ReadPosRankSum=-0.789;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359736.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422229    GT:AD:DP:GQ:PL    0/1:5,13:18:99:410,0,129
13    24895240    .    G    A    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=17.76;MQ0=5;QD=8.53;SNPEFF_AMINO_ACID_CHANGE=K112;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24895134_24896673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332018    GT:AD:DP:GQ:PL    1/1:0,8:8:9.02:100,9,0
13    24895559    rs3751357    A    G    1902.68    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.234;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=31.14;MQ0=12;MQRankSum=-1.404;QD=21.87;ReadPosRankSum=0.702;SNPEFF_AMINO_ACID_CHANGE=M219V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24895134_24896673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332018    GT:AD:DP:GQ:PL    1/1:1,86:87:99:1936,146,0
13    24895631    rs78083136    T    A    367.57    MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.514;DB;DP=129;Dels=0.0;FS=3.219;HRun=0;HaplotypeScore=1.6643;MQ=38.13;MQ0=7;MQRankSum=-0.929;QD=2.85;ReadPosRankSum=-0.784;SNPEFF_AMINO_ACID_CHANGE=C243S;SNPEFF_CODON_CHANGE=Tgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24895134_24896673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332018    GT:AD:DP:GQ:PL    0/1:99,30:129:99:398,0,2439
13    24895684    rs2862239    A    G    2619.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.39;MQ0=7;QD=23.81;SNPEFF_AMINO_ACID_CHANGE=E89G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24895684_24896097;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382066    GT:AD:DP:GQ:PL    1/1:0,108:108:99:2652,229,0
13    24895745    rs77554188    A    G    692.28    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.882;DB;DP=91;Dels=0.0;FS=3.108;HRun=0;HaplotypeScore=0.9734;MQ=54.1;MQ0=2;MQRankSum=1.458;QD=7.61;ReadPosRankSum=1.116;SNPEFF_AMINO_ACID_CHANGE=M281V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_24895134_24896673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332018    GT:AD:DP:GQ:PL    0/1:60,31:91:99:722,0,2076
13    24983141    rs6490913    G    A    1881.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.79;MQ0=0;QD=35.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-556N21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445572    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1915,147,0
13    24983323    rs139657299    T    TTTTAA    6100.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.0;HRun=0;HaplotypeScore=364.0295;IndelType=I;MQ=46.18;MQ0=1;QD=73.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-556N21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445572    GT:AD:DP:GQ:PL    1/1:13,58:79:99:6101,211,0
13    24983385    rs1992390    G    T    1978.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.62;MQ0=11;QD=24.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-556N21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445572    GT:AD:DP:GQ:PL    1/1:4,78:82:99:2012,165,0
13    24983499    rs1981276    C    A    1652.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=48.56;MQ0=0;QD=35.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-556N21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445572    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1686,132,0
13    24983513    rs1981277    G    A    1469.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.9;MQ0=0;QD=36.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-556N21.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445572    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1502,114,0
13    25000456    rs4769353    A    G    76.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=19.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
13    25000501    rs111651712    A    ATAAAG    765.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=41.3225;IndelType=I;MQ=30.22;MQ0=0;QD=63.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,11:9:27.09:808,27,0
13    25000617    rs7571    C    G    1437.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.58;MQ0=0;QD=29.95;SNPEFF_AMINO_ACID_CHANGE=A1656P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25000604_25000736;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1470,114,0
13    25000855    rs7324645    A    G    223.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:256,21,0
13    25000889    rs9511253    C    T    260.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=57.05;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:294,24,0
13    25000943    rs7324106    C    T    126.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,4:5:12.04:159,12,0
13    25005446    rs1816750    C    T    896.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=37.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:929,69,0
13    25005720    rs7996670    C    G    400.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.23;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:434,33,0
13    25008403    rs35576126    A    AC    420.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=24.206;IndelType=I;MQ=59.29;MQ0=0;QD=38.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:462,33,0
13    25008588    rs1372085    A    G    1975.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=32.38;SNPEFF_AMINO_ACID_CHANGE=I1564T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25008533_25009612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2008,150,0
13    25008630    rs1822135    A    G    2383.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=L1550P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25008533_25009612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,71:72:99:2416,193,0
13    25008903    rs9318536    G    T    661.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.07;MQ0=1;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=S1459Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25008533_25009612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,21:21:57.16:694,57,0
13    25009099    rs9511259    A    C    671.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.14;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=S1394A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25008533_25009612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:705,57,0
13    25009297    rs1050112    G    T    1577.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_AMINO_ACID_CHANGE=P1328T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25008533_25009612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1610,132,0
13    25009441    rs13428    C    G    2193.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=G1280R;SNPEFF_CODON_CHANGE=Ggt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25008533_25009612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2226,175,0
13    25009485    rs1050110    C    G    2359.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.81;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=G1265A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25008533_25009612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2393,184,0
13    25009769    rs7999554    C    A    353.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:387,30,0
13    25009786    rs8000215    A    G    215.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
13    25015967    rs61614647    C    T    787.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.39;MQ0=1;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:820,63,0
13    25016008    rs59195808    C    T    581.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.61;MQ0=3;QD=26.42;SNPEFF_AMINO_ACID_CHANGE=E1214;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25015984_25016106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:2,20:22:48.13:614,48,0
13    25016092    rs55888616    C    T    455.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.48;MQ0=2;QD=28.44;SNPEFF_AMINO_ACID_CHANGE=S1186;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25015984_25016106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:488,36,0
13    25016142    rs56259964    T    C    276.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.67;MQ0=1;QD=27.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:309,27,0
13    25016163    rs56092924    C    T    131.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.76;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:164,15,0
13    25016585    rs3816226    G    A    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
13    25016598    rs3816225    A    G    147.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:180,15,0
13    25016620    rs3816224    C    A    210.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
13    25016632    rs3816223    T    C    260.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:293,21,0
13    25016677    rs3816222    T    C    906.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:940,69,0
13    25016687    rs4770683    C    T    1222.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,33:33:93.28:1255,93,0
13    25016853    rs41288260    C    T    60.45    QDFilter2    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=0.686;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.3;MQ0=2;MQRankSum=-3.339;QD=1.59;ReadPosRankSum=-0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:31,7:38:90.44:90,0,1131
13    25016870    rs3816221    C    A    1004.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.73;MQ0=1;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1038,75,0
13    25016992    rs3816220    G    A    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
13    25017678    rs111987890    C    CCA    770.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=105.9171;IndelType=I;MQ=31.52;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:8,14:16:45.15:812,45,0
13    25017682    rs61947036    T    C    383.51    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=14.6804;MQ=36.52;MQ0=0;QD=17.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,22:22:39.06:417,39,0
13    25020757    rs9511273    T    C    462.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=38.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:496,36,0
13    25020782    rs9318553    C    G    550.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:584,42,0
13    25020863    rs9318554    G    A    1206.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=36.57;SNPEFF_AMINO_ACID_CHANGE=R1108C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25020819_25020899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1240,93,0
13    25020910    rs9507346    G    A    717.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=56.64;MQ0=0;QD=26.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,27:27:69.18:751,69,0
13    25021144    rs78060735    GTCT    G    4205.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;FS=0.0;HRun=0;HaplotypeScore=660.3122;IndelType=D;MQ=46.69;MQ0=2;QD=41.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484989    GT:AD:DP:GQ:PL    1/1:9,93:93:99:4206,259,0
13    25021200    rs9318558    A    C    2200.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8401;MQ=42.46;MQ0=4;QD=26.19;SNPEFF_AMINO_ACID_CHANGE=L1080R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25021154_25021324;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2233,195,0
13    25021211    rs7333856    C    T    2041    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.26;MQ0=3;MQRankSum=0.578;QD=25.51;ReadPosRankSum=-0.436;SNPEFF_AMINO_ACID_CHANGE=P1076;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25021154_25021324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:5,75:80:47.33:2074,47,0
13    25021245    rs7334587    A    G    1462.36    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=74;Dels=0.0;FS=3.392;HRun=0;HaplotypeScore=0.5784;MQ=43.57;MQ0=5;MQRankSum=-1.416;QD=19.76;ReadPosRankSum=0.501;SNPEFF_AMINO_ACID_CHANGE=V1065A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25021154_25021324;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:13,61:74:99:1492,0,148
13    25021263    rs77269056    T    C    70.35    QDFilter2    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.203;DB;DP=65;Dels=0.0;FS=1.52;HRun=1;HaplotypeScore=2.4021;MQ=48.54;MQ0=4;MQRankSum=0.137;QD=1.08;ReadPosRankSum=1.739;SNPEFF_AMINO_ACID_CHANGE=Q1059R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25021154_25021324;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:51,13:65:99:100,0,1652
13    25021323    rs73172125    A    G    82.64    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=1.645;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9998;MQ=52.08;MQ0=3;MQRankSum=-0.722;QD=2.36;ReadPosRankSum=1.01;SNPEFF_AMINO_ACID_CHANGE=I1039T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25021154_25021324;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:25,8:35:99:113,0,795
13    25027744    rs4770684    A    G    1563.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.57;SNPEFF_AMINO_ACID_CHANGE=M936T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25027725_25027792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1596,132,0
13    25029083    rs3818938    G    A    1257.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.38;MQ0=0;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480576    GT:AD:DP:GQ:PL    1/1:0,37:37:96.29:1291,96,0
13    25029218    rs2275660    C    T    4730.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=59.66;MQ0=0;QD=34.78;SNPEFF_AMINO_ACID_CHANGE=A899T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25029155_25029350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4730,361,0
13    25043029    rs4770694    C    T    241.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.29;MQ0=1;MQRankSum=0.382;QD=20.09;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:3,9:12:95.20:271,0,95
13    25043033    rs4770695    C    G    202.71    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.3;MQ0=1;MQRankSum=-1.606;QD=14.48;ReadPosRankSum=-1.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:3,11:14:96.60:233,0,97
13    25043365    rs9507354    G    A    133.81    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=55.75;MQ0=0;MQRankSum=-1.186;QD=12.16;ReadPosRankSum=1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:6,5:11:99:164,0,218
13    25043383    rs7337981    G    A    141.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.47;MQ0=0;MQRankSum=-0.684;QD=17.72;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:3,5:8:99:172,0,103
13    25049812    rs8001930    T    C    388    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.166;DB;DP=30;Dels=0.0;FS=1.773;HRun=1;HaplotypeScore=0.7887;MQ=58.72;MQ0=0;MQRankSum=0.581;QD=12.93;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:15,15:30:99:418,0,468
13    25049847    rs7995190    G    A    342.21    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=-0.619;QD=18.01;ReadPosRankSum=-1.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:8,11:19:99:372,0,274
13    25051718    rs9511302    T    C    419.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.545;QD=23.29;ReadPosRankSum=-1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:6,12:18:99:449,0,195
13    25052261    rs4770696    C    T    490.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=49;Dels=0.0;FS=6.116;HRun=0;HaplotypeScore=0.9894;MQ=58.52;MQ0=1;MQRankSum=-1.495;QD=10.02;ReadPosRankSum=0.889;SNPEFF_AMINO_ACID_CHANGE=S534;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25052231_25052414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:28,21:49:99:521,0,951
13    25052420    rs17080653    T    A    337.66    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.218;DB;DP=31;Dels=0.0;FS=2.062;HRun=1;HaplotypeScore=2.9645;MQ=57.0;MQ0=1;MQRankSum=0.819;QD=10.89;ReadPosRankSum=-0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:18,13:31:99:368,0,600
13    25059023    rs4769362    C    T    650.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=38.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:683,51,0
13    25059056    rs4770697    T    G    71.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.42;MQ0=0;MQRankSum=-0.55;QD=10.28;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,141
13    25065008    rs1361577    A    G    441.75    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-1.14;QD=16.36;ReadPosRankSum=0.558;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:13,14:27:99:472,0,441
13    25068934    rs4770700    G    T    684.18    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=2.385;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.341;QD=19.0;ReadPosRankSum=-2.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:14,22:36:99:714,0,443
13    25072200    rs1965154    T    C    333.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=22.21;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:5,10:15:99:363,0,161
13    25073399    rs34014909    G    GT    96.97    PASS    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=33;FS=0.0;HRun=15;HaplotypeScore=217.92;IndelType=I;MQ=44.25;MQ0=0;MQRankSum=-2.18;QD=2.69;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:28,5:33:5.90:135,0,6
13    25075859    rs1539096    C    T    769.23    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.086;DB;DP=66;Dels=0.0;FS=0.99;HRun=0;HaplotypeScore=0.6651;MQ=59.01;MQ0=0;MQRankSum=0.191;QD=11.66;ReadPosRankSum=-0.401;SNPEFF_AMINO_ACID_CHANGE=R82;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25075771_25075972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381989    GT:AD:DP:GQ:PL    0/1:36,30:66:99:799,0,1231
13    25160792    rs3978677    G    A    136.78    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.97;MQ0=0;MQRankSum=0.322;QD=17.1;ReadPosRankSum=-0.322;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-556N21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440905    GT:AD:DP:GQ:PL    0/1:3,5:8:78.37:167,0,78
13    25161438    rs3869320    T    A    62.08    MQFilter40;QDFilter2    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=3.794;DB;DP=123;Dels=0.0;FS=36.778;HRun=2;HaplotypeScore=1.4538;MQ=37.03;MQ0=10;MQRankSum=-5.992;QD=0.5;ReadPosRankSum=1.451;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-556N21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440905    GT:AD:DP:GQ:PL    0/1:88,35:123:92.07:92,0,2406
13    25161585    rs4769372    T    C    109.40    MQFilter40    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.458;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.85;MQ0=5;MQRankSum=0.275;QD=3.04;ReadPosRankSum=0.401;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-556N21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440905    GT:AD:DP:GQ:PL    0/1:22,14:36:99:139,0,476
13    25161610    rs61946938    T    A    141.03    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6492;MQ=26.64;MQ0=3;MQRankSum=0.4;QD=6.72;ReadPosRankSum=0.844;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-556N21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440905    GT:AD:DP:GQ:PL    0/1:12,9:21:99:171,0,212
13    25161651    .    G    T    49.13    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.63;MQ0=4;MQRankSum=0.0;QD=3.28;ReadPosRankSum=1.133;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-556N21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440905    GT:AD:DP:GQ:PL    0/1:8,6:14:79.13:79,0,161
13    25171521    rs7993300    T    G    344.74    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.389;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.455;QD=10.45;ReadPosRankSum=-1.184;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-556N21.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440905    GT:AD:DP:GQ:PL    0/1:19,14:33:99:375,0,608
13    25183454    rs55960345    G    T    39.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL359538.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390174    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:69,0,33
13    25256071    rs12871312    A    G    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
13    25259580    rs11620015    C    T    93.56    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=7.2;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    0/1:9,4:13:99:124,0,217
13    25262342    rs6490973    C    G    1631.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1665,135,0
13    25263299    rs2070810    G    A    686.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:719,54,0
13    25264294    rs735771    T    C    718.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:752,54,0
13    25264369    rs735770    T    C    1834.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1867,138,0
13    25264666    rs7996324    G    T    3211.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.924;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9325;MQ=59.75;MQ0=0;MQRankSum=-1.039;QD=35.29;ReadPosRankSum=-1.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:1,90:91:99:3245,212,0
13    25264715    rs7996486    G    A    4403.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.496;DB;DP=129;Dels=0.0;FS=4.187;HRun=0;HaplotypeScore=2.453;MQ=59.28;MQ0=0;MQRankSum=-0.353;QD=34.14;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:2,127:129:99:4404,304,0
13    25264723    rs7997850    C    T    4971.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.237;DB;DP=140;Dels=0.0;FS=6.182;HRun=0;HaplotypeScore=2.453;MQ=59.34;MQ0=0;MQRankSum=-0.461;QD=35.51;ReadPosRankSum=-1.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:1,138:140:99:4972,338,0
13    25265008    rs7986008    T    C    1784.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1818,147,0
13    25265103    rs7981616    A    G    1761.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=2.8198;MQ=58.82;MQ0=0;QD=29.86;SNPEFF_AMINO_ACID_CHANGE=A267;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25265102_25265388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1795,141,0
13    25265139    rs2071490    T    C    2062.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=V273;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25265120_25265388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381946    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2096,154,0
13    25266886    rs963985    C    T    5926.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.1192;MQ=59.35;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,172:172:99:5926,454,0
13    25266932    rs963984    C    A    4178.26    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.142;DB;DP=250;DS;Dels=0.0;FS=2.899;HRun=0;HaplotypeScore=4.2929;MQ=59.45;MQ0=0;MQRankSum=0.533;QD=16.71;ReadPosRankSum=0.266;SNPEFF_AMINO_ACID_CHANGE=V425;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25266925_25267034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381946    GT:AD:DP:GQ:PL    0/1:104,144:250:99:4178,0,2849
13    25267088    rs963983    C    T    2058.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2092,159,0
13    25268417    rs9553420    G    A    131.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
13    25268445    rs9553421    G    A    446.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:479,36,0
13    25268767    rs118100366    T    C    301.80    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.461;QD=10.41;ReadPosRankSum=-0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    0/1:18,11:29:99:332,0,578
13    25268776    rs2289898    A    G    870.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:904,69,0
13    25268848    rs2289899    A    G    168.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
13    25272608    rs724328    G    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    25280661    .    A    C    243.40    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=17.39;ReadPosRankSum=-2.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    0/1:5,9:14:99:273,0,154
13    25284407    rs735874    A    T    60.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218548    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:93,9,0
13    25338132    rs3809337    C    T    89.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    25338586    rs9578783    A    G    81.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
13    25352298    rs7334713    A    G    375.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
13    25355824    rs1551153    T    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
13    25355965    rs71752711    GT    G    376.44    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.611;DB;DP=26;FS=2.83;HRun=12;HaplotypeScore=92.6694;IndelType=D;MQ=59.53;MQ0=0;MQRankSum=1.135;QD=14.48;ReadPosRankSum=0.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    0/1:4,22:26:18.81:415,0,19
13    25363319    rs9634408    C    A    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.53;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,149
13    25363776    rs6490979    C    T    1461.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1494,111,0
13    25368585    rs1357566    A    G    169.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
13    25370255    rs1446294    A    G    2528.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=59.74;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2561,190,0
13    25373432    rs2166431    C    T    551.54    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.556;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.365;QD=23.98;ReadPosRankSum=-0.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255326    GT:AD:DP:GQ:PL    0/1:6,17:23:99:582,0,187
13    25374322    rs3039483    C    CAG    263.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=11.0025;IndelType=I;MQ=60.0;MQ0=0;QD=52.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255326    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:305,15,0
13    25376817    rs5802306    TGAA    T    156.92    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=49.8454;IndelType=D;MQ=56.71;MQ0=0;MQRankSum=-0.676;QD=14.27;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    0/1:6,5:11:99:196,0,306
13    25378476    rs9511451    A    G    408.71    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DB;DP=27;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.003;QD=15.14;ReadPosRankSum=1.363;SNPEFF_AMINO_ACID_CHANGE=H526R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25378426_25378567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429047    GT:AD:DP:GQ:PL    0/1:12,15:27:99:439,0,351
13    25399702    rs9553451    C    A    538.68    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.683;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=14.96;ReadPosRankSum=0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255325    GT:AD:DP:GQ:PL    0/1:15,21:36:99:569,0,517
13    25399752    rs2121253    A    G    2121.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255325    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2155,157,0
13    25404743    rs4769382    T    C    3753.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.8;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3754,283,0
13    25404945    rs4769383    G    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    25418996    rs9511472    T    G    63.74    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.518;DB;DP=21;Dels=0.0;FS=7.501;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.195;QD=3.04;ReadPosRankSum=-0.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    0/1:15,6:21:93.74:94,0,535
13    25419176    rs6490984    A    G    1485.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.7;SNPEFF_AMINO_ACID_CHANGE=T1020;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25419099_25419217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1518,114,0
13    25424369    rs9511476    A    G    81.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.3;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    0/1:2,3:5:65.60:111,0,66
13    25440318    rs9507425    G    A    808.70    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.229;DB;DP=75;Dels=0.0;FS=3.105;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=10.78;ReadPosRankSum=-1.282;SNPEFF_AMINO_ACID_CHANGE=E1338K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25440282_25440341;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381921    GT:AD:DP:GQ:PL    0/1:41,34:75:99:839,0,1338
13    25440496    rs9511482    T    C    102.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=14.65;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    0/1:3,4:7:99:133,0,106
13    25442921    rs2275938    A    C    391.40    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.815;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.08;QD=13.5;ReadPosRankSum=0.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    0/1:14,15:29:99:421,0,453
13    25444934    rs2305368    C    T    191.48    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.156;QD=8.7;ReadPosRankSum=-0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255324    GT:AD:DP:GQ:PL    0/1:15,7:22:99:221,0,484
13    25448423    rs66466806    CT    C    334.72    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=4.029;DB;DP=37;FS=0.0;HRun=9;HaplotypeScore=87.2223;IndelType=D;MQ=58.74;MQ0=0;MQRankSum=-0.536;QD=9.05;ReadPosRankSum=1.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418120    GT:AD:DP:GQ:PL    0/1:20,17:37:99:374,0,389
13    25451097    rs9553460    G    A    495.78    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=3.4;DB;DP=31;Dels=0.0;FS=5.722;HRun=0;HaplotypeScore=0.9916;MQ=56.17;MQ0=0;MQRankSum=-2.023;QD=15.99;ReadPosRankSum=0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418120    GT:AD:DP:GQ:PL    0/1:11,20:31:99:526,0,324
13    25457207    rs9318911    T    C    1054.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445729    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1087,81,0
13    25457595    rs7317575    G    T    399.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471870    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:432,33,0
13    25458650    rs1530876    G    A    399.58    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=32;Dels=0.0;FS=9.454;HRun=3;HaplotypeScore=1.9985;MQ=59.28;MQ0=0;MQRankSum=0.455;QD=12.49;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493190    GT:AD:DP:GQ:PL    0/1:17,15:32:99:430,0,511
13    25458853    rs59754065    T    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493190    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    25459713    rs34888101    G    GTT    901.17    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.862;DB;DP=52;FS=3.176;HRun=3;HaplotypeScore=151.9312;IndelType=I;MQ=59.26;MQ0=1;MQRankSum=0.011;QD=17.0;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381884    GT:AD:DP:GQ:PL    0/1:31,21:52:99:940,0,987
13    25466774    rs9318917    T    C    647.40    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=52;Dels=0.0;FS=3.566;HRun=3;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=0.884;QD=12.45;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381884    GT:AD:DP:GQ:PL    0/1:30,22:52:99:677,0,933
13    25467020    .    AAAC    A    803.82    PASS    AB=0.817;AC=1;AF=0.50;AN=2;BaseQRankSum=5.054;DP=58;FS=7.474;HRun=0;HaplotypeScore=312.8986;IndelType=D;MQ=55.47;MQ0=0;MQRankSum=-0.513;QD=13.86;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381884    GT:AD:DP:GQ:PL    0/1:45,13:58:99:843,0,1433
13    25467141    rs3742166    G    A    258.18    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=28.69;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381884    GT:AD:DP:GQ:PL    0/1:1,8:9:15.14:288,0,15
13    25473459    rs68159097    TAC    T    133.88    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=48.9751;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=8.93;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381884    GT:AD:DP:GQ:PL    0/1:10,5:15:99:173,0,451
13    25479541    rs17402892    A    C    774.14    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=3.522;DB;DP=46;Dels=0.0;FS=6.901;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.349;QD=16.83;ReadPosRankSum=-0.169;SNPEFF_AMINO_ACID_CHANGE=S879A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25479484_25481098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381884    GT:AD:DP:GQ:PL    0/1:18,28:46:99:804,0,550
13    25486911    rs9511510    G    T    908.38    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=64;Dels=0.0;FS=8.766;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=1.189;QD=14.19;ReadPosRankSum=-0.158;SNPEFF_AMINO_ACID_CHANGE=P85T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25486720_25487229;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPJ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381884    GT:AD:DP:GQ:PL    0/1:31,32:64:99:938,0,1045
13    25510802    .    A    G    51.04    MQFilter40;QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=0.511;DP=51;Dels=0.0;FS=1.695;HRun=2;HaplotypeScore=1.6918;MQ=32.08;MQ0=15;MQRankSum=-0.341;QD=1.0;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-756A22.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420140    GT:AD:DP:GQ:PL    0/1:42,9:51:81.04:81,0,808
13    25525370    rs9511519    C    T    58.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=11.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435256    GT:AD:DP:GQ:PL    0/1:2,3:5:57.73:89,0,58
13    25525481    rs56247049    G    A    482.03    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.11;MQ0=0;MQRankSum=0.704;QD=11.21;ReadPosRankSum=-1.138;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435256    GT:AD:DP:GQ:PL    0/1:24,19:43:99:512,0,539
13    25525488    rs2167398    G    A    550.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.81;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.37;MQ0=0;MQRankSum=2.126;QD=11.97;ReadPosRankSum=-1.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435256    GT:AD:DP:GQ:PL    0/1:23,23:46:99:581,0,542
13    25525544    rs41288282    T    C    897.74    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=54;Dels=0.0;FS=3.822;HRun=1;HaplotypeScore=0.0;MQ=58.52;MQ0=0;MQRankSum=-0.781;QD=16.62;ReadPosRankSum=0.834;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:24,30:54:99:928,0,661
13    25525636    rs41288284    G    C    405.67    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.36;DB;DP=38;Dels=0.0;FS=9.087;HRun=0;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=0.83;QD=10.68;ReadPosRankSum=0.485;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:23,15:38:99:436,0,736
13    25525767    rs9511521    G    A    195.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.566;DB;DP=21;Dels=0.0;FS=7.57;HRun=0;HaplotypeScore=0.9578;MQ=44.57;MQ0=0;MQRankSum=1.347;QD=9.29;ReadPosRankSum=0.158;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:14,7:21:99:225,0,255
13    25525904    rs60463148    T    C    357.87    MQFilter40    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=3.296;DB;DP=39;Dels=0.0;FS=10.84;HRun=1;HaplotypeScore=0.0;MQ=32.87;MQ0=2;MQRankSum=0.475;QD=9.18;ReadPosRankSum=-0.261;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:22,17:39:99:388,0,489
13    25533831    rs2483374    A    C    825.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.31;MQ0=0;QD=33.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:858,66,0
13    25535734    rs149814463    C    G    40.53    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=21.26;MQ0=2;MQRankSum=0.322;QD=4.05;ReadPosRankSum=1.517;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:4,6:10:64.99:71,0,65
13    25535764    rs80171639    C    G    218.98    MQFilter40    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.74;MQ0=1;MQRankSum=1.632;QD=13.69;ReadPosRankSum=-2.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:5,11:16:43.96:249,0,44
13    25535765    rs78150284    A    G    218.98    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.74;MQ0=1;MQRankSum=1.632;QD=13.69;ReadPosRankSum=-1.893;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:4,12:16:43.96:249,0,44
13    25536049    .    CT    C    229.94    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DP=75;FS=5.912;HRun=16;HaplotypeScore=418.311;IndelType=D;MQ=42.85;MQ0=5;MQRankSum=2.984;QD=2.35;ReadPosRankSum=1.986;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:43,29:75:99:269,0,258
13    25536372    .    G    C    111.51    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.583;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.31;MQ0=4;MQRankSum=1.073;QD=6.97;ReadPosRankSum=-0.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429698    GT:AD:DP:GQ:PL    0/1:9,7:16:99:142,0,138
13    25541467    rs2483380    C    T    860.95    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.635;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.405;QD=16.56;ReadPosRankSum=-0.221;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381871    GT:AD:DP:GQ:PL    0/1:23,29:52:99:891,0,746
13    25541815    rs2184123    T    C    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.48;MQ0=0;QD=25.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381871    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    25542424    rs9511546    T    A    614.93    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.25;MQ0=0;MQRankSum=1.997;QD=15.77;ReadPosRankSum=0.722;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPTE2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381871    GT:AD:DP:GQ:PL    0/1:17,22:39:99:645,0,496
13    25820555    rs16413    TTTAA    T    2778.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=283.2151;IndelType=D;MQ=55.85;MQ0=0;QD=52.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319298    GT:AD:DP:GQ:PL    1/1:1,52:53:99:2821,157,0
13    25823207    rs7999040    T    A    91.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540661    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
13    25825889    rs4312169    T    C    2871.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6918;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_AMINO_ACID_CHANGE=Q501;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25825787_25825913;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381801    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2904,214,0
13    25831888    rs7995033    T    C    1038.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.69;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=I319V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25831874_25831983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381801    GT:AD:DP:GQ:PL    1/1:0,32:32:78.26:1072,78,0
13    25841842    rs4594103    T    A    820.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319298    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:853,69,0
13    25848404    rs4387458    A    C    314.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319298    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:348,27,0
13    25876011    rs12871898    G    A    78.69    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=6.05;ReadPosRankSum=-1.545;SNPEFF_AMINO_ACID_CHANGE=A11T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_25876004_25876018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313619    GT:AD:DP:GQ:PL    0/1:8,5:13:99:109,0,248
13    25886932    rs4341628    A    G    78.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460326    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
13    25893363    rs67121039    GTTTATA    G    2866.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=327.5824;IndelType=D;MQ=38.19;MQ0=0;QD=62.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495460    GT:AD:DP:GQ:PL    1/1:0,46:46:99:2909,135,0
13    25899091    rs71929536    C    CT    179.41    QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=1.784;DB;DP=100;FS=3.966;HRun=16;HaplotypeScore=628.2468;IndelType=I;MQ=55.81;MQ0=0;MQRankSum=-0.17;QD=1.79;ReadPosRankSum=-1.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313619    GT:AD:DP:GQ:PL    0/1:66,20:100:99:218,0,471
13    25900838    rs7990216    C    T    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476553    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
13    25901781    rs7997070    A    C    218.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476553    GT:AD:DP:GQ:PL    1/1:0,7:7:21.03:251,21,0
13    25905416    rs9553582    T    C    389.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313619    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:422,33,0
13    25911050    rs35777751    AT    A    78.37    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=35;FS=1.906;HRun=16;HaplotypeScore=207.4637;IndelType=D;MQ=56.91;MQ0=0;MQRankSum=0.789;QD=2.24;ReadPosRankSum=-0.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381745    GT:AD:DP:GQ:PL    0/1:21,12:35:99:117,0,255
13    26043182    rs7317185    A    C    391.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.726;DB;DP=42;Dels=0.0;FS=7.282;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.53;QD=9.32;ReadPosRankSum=0.911;SNPEFF_AMINO_ACID_CHANGE=E10A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_26043154_26043222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544544    GT:AD:DP:GQ:PL    0/1:24,18:42:99:422,0,749
13    26108557    rs4257084    G    A    115.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381648    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
13    26125651    rs34018109    G    A    240.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.714;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.476;QD=7.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    0/1:22,11:33:99:270,0,658
13    26125731    rs9581389    T    C    250.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:283,24,0
13    26127821    rs9740054    G    C    388.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=27.76;ReadPosRankSum=-1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:1,13:14:2.97:419,3,0
13    26128096    rs9742643    T    C    673.64    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.331;DB;DP=54;Dels=0.0;FS=4.31;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.069;QD=12.47;ReadPosRankSum=-0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    0/1:29,25:54:99:704,0,911
13    26128260    rs3132368    C    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
13    26133009    rs12862551    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
13    26134173    rs35350386    T    C    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    26137957    rs12018180    T    C    182.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=26.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:215,18,0
13    26137989    rs12871941    T    C    439.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:473,36,0
13    26144896    rs17729346    C    T    523.83    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.172;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8633;MQ=59.36;MQ0=0;MQRankSum=-2.028;QD=14.55;ReadPosRankSum=0.856;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    0/1:19,17:36:99:554,0,583
13    26148727    rs12854617    A    G    33.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
13    26148966    rs6491066    C    T    1614.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=F341;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_26148946_26148995;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544544    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1648,120,0
13    26151184    rs71752532    C    CT    1020.17    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.87;DB;DP=121;FS=6.67;HRun=11;HaplotypeScore=369.8053;IndelType=I;MQ=59.33;MQ0=0;MQRankSum=-0.939;QD=8.43;ReadPosRankSum=-0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    0/1:71,44:121:99:1059,0,969
13    26153950    .    G    T    43.50    FSFilter60;QDFilter2    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.105;DP=70;Dels=0.0;FS=101.698;HRun=2;HaplotypeScore=0.0;MQ=52.28;MQ0=0;MQRankSum=-3.952;QD=0.62;ReadPosRankSum=-1.043;SNPEFF_AMINO_ACID_CHANGE=L404F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_26153946_26154085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544544    GT:AD:DP:GQ:PL    0/1:53,17:70:73.50:73,0,1841
13    26155953    rs7335339    G    C    971.92    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.62;DB;DP=72;Dels=0.0;FS=2.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.268;QD=13.5;ReadPosRankSum=0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1002,0,1186
13    26156262    rs6491071    C    T    111.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.52;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    0/1:2,4:6:61.50:141,0,61
13    26273385    rs6491088    G    C    1493.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=L542;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_26273311_26273483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544544    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1526,114,0
13    26273403    rs7335858    C    A    379.25    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.346;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9227;MQ=59.32;MQ0=0;MQRankSum=-0.346;QD=11.15;ReadPosRankSum=-0.674;SNPEFF_AMINO_ACID_CHANGE=T548;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_26273311_26273483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544544    GT:AD:DP:GQ:PL    0/1:20,14:34:99:409,0,611
13    26273538    rs2296003    C    T    363.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:396,30,0
13    26445247    rs145017510    GGT    G    625.61    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=143.0966;IndelType=D;MQ=58.15;MQ0=0;MQRankSum=0.999;QD=19.55;ReadPosRankSum=0.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL138815.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400553    GT:AD:DP:GQ:PL    0/1:17,15:32:99:665,0,838
13    26535625    rs9511998    G    A    688.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255283    GT:AD:DP:GQ:PL    1/1:0,19:19:57.15:722,57,0
13    26706804    rs9512116    A    G    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468480    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
13    26788114    rs301047    A    G    1146.45    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.608;DB;DP=84;Dels=0.0;FS=0.81;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.463;QD=13.65;ReadPosRankSum=-0.795;SNPEFF_AMINO_ACID_CHANGE=C279;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_26787923_26788906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RNF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399762    GT:AD:DP:GQ:PL    0/1:46,38:84:99:1176,0,1560
13    26828740    rs187998245    G    A    65.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=10.89;ReadPosRankSum=0.406;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536792    GT:AD:DP:GQ:PL    0/1:3,3:6:86.19:95,0,86
13    26923073    rs1541038    G    A    237.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381527    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:270,21,0
13    26967849    rs943682    C    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381527    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
13    26974562    rs998692    G    A    3212.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.75;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381527    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3246,235,0
13    27242004    rs640409    C    T    32.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335327    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
13    27246216    rs1276045    T    C    146.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.098;QD=14.69;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335327    GT:AD:DP:GQ:PL    0/1:5,5:10:99:177,0,163
13    27250945    rs3794413    A    G    220.41    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;MQRankSum=0.58;QD=10.02;ReadPosRankSum=0.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496788    GT:AD:DP:GQ:PL    0/1:14,8:22:99:250,0,418
13    27332836    rs1927522    A    G    37.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.71;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381436    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
13    27643597    rs9512534    C    T    562.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282344    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:595,45,0
13    27827811    rs3094292    C    T    661.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000272274    GT:AD:DP:GQ:PL    1/1:0,17:18:51.17:694,51,0
13    27829310    rs3094293    G    A    1412.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=38.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473558    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1446,111,0
13    27829732    rs146807336    G    A    226.88    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.278;QD=20.63;ReadPosRankSum=-1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473558    GT:AD:DP:GQ:PL    0/1:4,7:11:99:257,0,124
13    27894047    rs2151436    G    A    392.91    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=27;Dels=0.0;FS=4.151;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.043;QD=14.55;ReadPosRankSum=-0.218;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL159977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408829    GT:AD:DP:GQ:PL    0/1:13,14:27:99:423,0,420
13    27894213    rs9512616    C    T    324.87    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.287;DB;DP=25;Dels=0.0;FS=6.186;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.575;QD=12.99;ReadPosRankSum=0.794;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL159977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408829    GT:AD:DP:GQ:PL    0/1:14,11:25:99:355,0,502
13    27997758    rs75326986    C    T    105.67    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=15.1;ReadPosRankSum=-1.754;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381140    GT:AD:DP:GQ:PL    0/1:3,4:7:99:136,0,106
13    27997999    rs3759433    G    A    63.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=9.09;ReadPosRankSum=-1.754;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381140    GT:AD:DP:GQ:PL    0/1:4,3:7:93.66:94,0,152
13    28003997    rs9581848    C    T    346.32    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.571;QD=13.85;ReadPosRankSum=-0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381140    GT:AD:DP:GQ:PL    0/1:13,12:25:99:376,0,402
13    28009851    rs7669    G    A    1650.48    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.544;DB;DP=139;Dels=0.0;FS=3.066;HRun=0;HaplotypeScore=4.4573;MQ=59.87;MQ0=0;MQRankSum=0.589;QD=11.87;ReadPosRankSum=1.565;SNPEFF_AMINO_ACID_CHANGE=D266;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28009780_28010030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381116    GT:AD:DP:GQ:PL    0/1:82,57:139:99:1680,0,2634
13    28009920    rs1218825    G    C    1093.98    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.399;DB;DP=103;Dels=0.0;FS=4.819;HRun=0;HaplotypeScore=2.5981;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=10.62;ReadPosRankSum=0.396;SNPEFF_AMINO_ACID_CHANGE=F243L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28009780_28010030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTIF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381116    GT:AD:DP:GQ:PL    0/1:63,39:103:99:1124,0,2081
13    28010117    rs1885989    G    A    67.97    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=9.71;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381140    GT:AD:DP:GQ:PL    0/1:4,3:7:97.97:98,0,137
13    28011158    rs74811644    G    A    73.04    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.327;QD=4.06;ReadPosRankSum=-0.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381140    GT:AD:DP:GQ:PL    0/1:14,4:18:99:103,0,516
13    28011594    rs45622135    T    C    78.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381140    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
13    28124777    rs1323969    C    T    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316334    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
13    28136989    rs11838661    A    G    298.49    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=9.63;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316334    GT:AD:DP:GQ:PL    0/1:19,12:31:99:328,0,601
13    28137114    rs7332765    G    A    68.65    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.16;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316334    GT:AD:DP:GQ:PL    0/1:1,3:4:27.98:99,0,28
13    28137152    rs34692286    G    C    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316334    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:63,0,70
13    28143229    rs8002697    A    G    2152.99    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=3.291;DB;DP=183;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7474;MQ=59.58;MQ0=0;MQRankSum=-1.667;QD=11.76;ReadPosRankSum=-1.337;SNPEFF_AMINO_ACID_CHANGE=S198P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28143166_28143413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LNX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316334    GT:AD:DP:GQ:PL    0/1:100,83:183:99:2183,0,2935
13    28197436    rs7097    C    T    380.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.171;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.609;QD=21.12;ReadPosRankSum=-0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399697    GT:AD:DP:GQ:PL    0/1:6,12:18:99:410,0,197
13    28239940    rs11029    G    C    1002.25    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=3.078;DB;DP=58;Dels=0.0;FS=1.053;HRun=1;HaplotypeScore=0.9665;MQ=57.65;MQ0=0;MQRankSum=0.075;QD=17.28;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=A73;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28239823_28241548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399697    GT:AD:DP:GQ:PL    0/1:23,34:58:99:1032,0,590
13    28239970    rs14105    G    A    991.73    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.635;DB;DP=63;Dels=0.0;FS=3.806;HRun=2;HaplotypeScore=0.9973;MQ=58.22;MQ0=0;MQRankSum=-0.182;QD=15.74;ReadPosRankSum=-1.154;SNPEFF_AMINO_ACID_CHANGE=P83;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28239823_28241548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR1D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399697    GT:AD:DP:GQ:PL    0/1:28,35:63:99:1022,0,749
13    28367061    rs1231058    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_AMINO_ACID_CHANGE=L78;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28366780_28367239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302945    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    28367275    rs3742112    G    C    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302945    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:65,0,33
13    28519354    rs2504220    A    C    285.10    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.102;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.23;MQ0=0;MQRankSum=-0.701;QD=8.39;ReadPosRankSum=-1.301;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_28519343_28519727;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5EP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381026    GT:AD:DP:GQ:PL    0/1:19,13:34:99:315,0,608
13    28519653    rs75863106    A    T    193.26    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.57;MQ0=0;MQRankSum=-1.331;QD=10.17;ReadPosRankSum=-0.058;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5EP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381026    GT:AD:DP:GQ:PL    0/1:10,9:19:99:223,0,269
13    28537242    rs1805108    A    C    294.38    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.064;QD=14.72;ReadPosRankSum=1.216;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381020    GT:AD:DP:GQ:PL    0/1:9,11:20:99:324,0,295
13    28537317    rs1805107    G    A    281.29    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.262;DB;DP=23;Dels=0.0;FS=1.707;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.769;QD=12.23;ReadPosRankSum=-0.277;SNPEFF_AMINO_ACID_CHANGE=P293S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28535826_28537506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381020    GT:AD:DP:GQ:PL    0/1:12,11:23:99:311,0,321
13    28537537    rs2504212    T    G    108.45    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.69;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381020    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:138,0,27
13    28539185    rs2481953    T    A    32.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.38;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381020    GT:AD:DP:GQ:PL    0/1:4,2:6:62.28:62,0,139
13    28589267    rs4073630    C    T    328.49    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.939;QD=17.29;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:9,10:19:99:358,0,308
13    28589495    rs9579142    C    G    32.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.7;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:5,2:7:62.92:63,0,184
13    28589662    rs4497507    C    G    263.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    1/1:0,13:13:24.07:297,24,0
13    28592546    rs17086226    T    C    171.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=11.44;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:9,6:15:99:202,0,314
13    28598825    rs12427992    T    C    147.35    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=16.37;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,135
13    28602226    rs67947208    AAGAG    A    283.04    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=103.0015;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=-1.58;QD=23.59;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:2,7:12:7.62:322,0,8
13    28602256    rs61944200    C    T    269.27    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.308;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=55.86;MQ0=0;MQRankSum=0.215;QD=11.71;ReadPosRankSum=2.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:11,12:23:99:299,0,320
13    28607916    rs2491222    T    A    302.54    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.038;QD=11.64;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:15,11:26:99:333,0,537
13    28607989    rs2491223    T    G    841.50    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.45;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.858;QD=13.8;ReadPosRankSum=2.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:31,30:61:99:871,0,1002
13    28609825    rs2491227    A    G    572.65    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.03;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.6;MQ0=0;MQRankSum=-0.25;QD=11.45;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:26,24:50:99:603,0,789
13    28609846    rs2491228    A    T    564.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.168;DB;DP=38;Dels=0.0;FS=5.04;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.876;QD=14.85;ReadPosRankSum=-0.321;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:19,19:38:99:594,0,591
13    28609991    rs2491229    T    C    1211.87    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.711;DB;DP=77;Dels=0.0;FS=7.362;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.494;QD=15.74;ReadPosRankSum=0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:36,41:77:99:1242,0,1218
13    28609997    rs2491230    T    C    1462.95    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.618;DB;DP=89;Dels=0.0;FS=3.193;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=1.494;QD=16.44;ReadPosRankSum=1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:43,46:89:99:1493,0,1465
13    28610183    rs2491231    A    G    1279.29    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.574;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.68;MQ0=0;MQRankSum=-0.428;QD=18.02;ReadPosRankSum=0.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:33,38:71:99:1309,0,1030
13    28610355    rs2491232    T    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
13    28622356    rs2153000    G    A    1263.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.1221;MQ=59.41;MQ0=0;MQRankSum=1.644;QD=32.4;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    1/1:1,38:39:99:1297,99,0
13    28623587    rs35602083    C    T    1450.97    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=2.259;DB;DP=83;Dels=0.0;FS=11.327;HRun=1;HaplotypeScore=0.9332;MQ=59.72;MQ0=0;MQRankSum=1.406;QD=17.48;ReadPosRankSum=-1.125;SNPEFF_AMINO_ACID_CHANGE=D324N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28623521_28623674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:35,48:83:99:1481,0,1037
13    28624294    rs1933437    G    A    813.71    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.285;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=15.65;ReadPosRankSum=-0.45;SNPEFF_AMINO_ACID_CHANGE=T227M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28624232_28624359;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:24,28:52:99:844,0,680
13    28636084    rs7338903    G    A    2207.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=D96;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28636004_28636206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2240,163,0
13    28644510    rs2387350    C    A    584.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:617,45,0
13    28647489    rs35318238    GA    G    272.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=17;HaplotypeScore=272.252;IndelType=D;MQ=53.77;MQ0=0;QD=6.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    1/1:13,15:43:75.64:315,76,0
13    28647573    rs9581971    C    T    1039.14    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.508;DB;DP=91;Dels=0.0;FS=5.674;HRun=3;HaplotypeScore=0.8941;MQ=57.89;MQ0=0;MQRankSum=-0.075;QD=11.42;ReadPosRankSum=-0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:51,40:91:99:1069,0,1428
13    28647710    rs9581972    C    T    168.14    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.387;QD=15.29;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:5,6:11:99:198,0,146
13    28647723    rs9581973    A    C    80.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=11.48;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:3,4:7:99:110,0,105
13    28647741    rs11149513    T    A    31.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=6.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    0/1:3,2:5:61.34:61,0,84
13    28647759    rs9581974    T    A    107.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000241453    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
13    28794258    rs1286880    C    T    781.63    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.236;DB;DP=51;Dels=0.0;FS=3.274;HRun=3;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.104;QD=15.33;ReadPosRankSum=0.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PAN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380958    GT:AD:DP:GQ:PL    0/1:27,24:51:99:812,0,951
13    28835527    rs5802469    T    TC    1930.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=86.7543;IndelType=I;MQ=61.25;MQ0=0;QD=45.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PAN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483842    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1973,126,0
13    28866420    rs149303602    CA    C    130.14    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=25.3692;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=0.0;QD=11.83;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PAN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282391    GT:AD:DP:GQ:PL    0/1:4,7:11:99:169,0,112
13    28882948    rs9579177    G    A    648.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:681,51,0
13    28883061    rs7993418    G    A    1148.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=Y1213;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_28882980_28883064;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1182,84,0
13    28885672    rs4771238    C    T    552.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:586,45,0
13    28886113    rs7328692    A    G    756.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:1,23:24:60.19:790,60,0
13    28891487    rs2057534    T    C    252.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
13    28893484    rs2296188    T    C    174.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
13    28893782    .    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    28895524    rs2296190    G    C    1204.14    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9663;MQ=59.08;MQ0=0;MQRankSum=-0.343;QD=16.96;ReadPosRankSum=0.863;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1234,0,933
13    28919462    rs2296192    T    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    28958955    rs3751395    C    A    381.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=14.66;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    0/1:13,13:26:99:411,0,343
13    28980036    rs55955231    T    TA    847.94    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.865;DB;DP=77;FS=9.219;HRun=10;HaplotypeScore=233.6366;IndelType=I;MQ=58.78;MQ0=0;MQRankSum=-1.439;QD=11.01;ReadPosRankSum=-0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    0/1:45,32:77:99:887,0,567
13    28980150    rs5802481    A    AG    513    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=26.3302;IndelType=I;MQ=58.98;MQ0=0;QD=42.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282397    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:555,36,0
13    29236489    rs1340815    C    T    428.39    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8644;MQ=58.84;MQ0=0;MQRankSum=0.396;QD=21.42;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380842    GT:AD:DP:GQ:PL    0/1:7,13:20:99:458,0,213
13    29238576    rs3737528    T    C    369.22    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.185;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.339;QD=16.05;ReadPosRankSum=0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380842    GT:AD:DP:GQ:PL    0/1:11,12:23:99:399,0,369
13    29275102    rs947027    T    C    597.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC46A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380814    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:630,45,0
13    29275129    rs705423    C    T    121.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=8.66;ReadPosRankSum=-1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC46A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380814    GT:AD:DP:GQ:PL    0/1:8,6:14:99:151,0,260
13    29278063    rs34444192    T    TA    843.62    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.757;DB;DP=64;FS=7.679;HRun=5;HaplotypeScore=155.6575;IndelType=I;MQ=58.18;MQ0=0;MQRankSum=0.283;QD=13.18;ReadPosRankSum=0.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC46A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266943    GT:AD:DP:GQ:PL    0/1:37,27:64:99:883,0,911
13    29278264    rs34310301    G    GA    323.03    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.913;DB;DP=46;FS=9.429;HRun=10;HaplotypeScore=175.785;IndelType=I;MQ=57.66;MQ0=0;MQRankSum=1.753;QD=7.02;ReadPosRankSum=-2.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC46A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266943    GT:AD:DP:GQ:PL    0/1:31,14:46:99:362,0,467
13    29291886    rs1300235    A    G    1357.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=37.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC46A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266943    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1390,105,0
13    29674840    rs1536720    T    C    535.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    1/1:0,16:16:45.10:568,45,0
13    29674855    rs1536719    A    G    679.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:712,60,0
13    29675049    rs140464903    A    T    370.02    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.45;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.558;QD=11.21;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=S872;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_29674910_29675107;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    0/1:17,16:33:99:400,0,519
13    29855822    rs3751335    C    T    824.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:857,66,0
13    29898768    rs928661    A    C    1410.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=Q952P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_29898750_29898848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1444,108,0
13    29898881    rs928660    A    G    750.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:784,66,0
13    29898889    rs928659    G    C    783.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:816,63,0
13    29899049    rs9508352    T    C    87.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
13    29933712    rs4769728    T    C    117.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431530    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
13    30071310    rs2258198    G    T    80.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380808    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
13    30075114    rs882953    C    T    444.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467990    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:477,36,0
13    30077088    rs2482096    C    T    422.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380808    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:456,33,0
13    30090404    rs2989592    T    C    402.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473577    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:436,33,0
13    30091516    rs2490267    T    C    318.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380752    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:351,27,0
13    30091714    rs2482089    G    A    3128.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.75;MQ0=0;QD=34.0;SNPEFF_AMINO_ACID_CHANGE=L502;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_30091710_30091927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380752    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3161,235,0
13    30091819    rs2482090    G    C    1891.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.51;SNPEFF_AMINO_ACID_CHANGE=G467;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_30091710_30091927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380752    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1925,147,0
13    30097307    rs2802240    G    A    689    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380752    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:722,54,0
13    30098215    rs2776957    C    T    361.69    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.646;DB;DP=20;Dels=0.0;FS=6.107;HRun=2;HaplotypeScore=0.9665;MQ=48.83;MQ0=0;MQRankSum=0.159;QD=18.08;ReadPosRankSum=-2.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380752    GT:AD:DP:GQ:PL    0/1:5,14:20:99:392,0,99
13    30098226    rs2776958    A    G    506.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.42;MQ0=0;QD=24.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380752    GT:AD:DP:GQ:PL    1/1:0,21:21:45.12:539,45,0
13    30107067    rs2277451    G    C    771.03    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.013;DB;DP=53;Dels=0.0;FS=1.289;HRun=2;HaplotypeScore=0.6651;MQ=58.77;MQ0=0;MQRankSum=-0.502;QD=14.55;ReadPosRankSum=0.256;SNPEFF_AMINO_ACID_CHANGE=G141;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_30106961_30107119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380752    GT:AD:DP:GQ:PL    0/1:25,28:53:99:801,0,698
13    30109809    rs1018680    C    T    128.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450494    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
13    30346188    rs2234416    A    C    86.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.201;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=4.79;ReadPosRankSum=-1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380680    GT:AD:DP:GQ:PL    0/1:12,6:18:99:116,0,419
13    30351248    rs35681461    T    TA    1020.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=2;HaplotypeScore=51.1675;IndelType=I;MQ=61.64;MQ0=0;QD=39.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380680    GT:AD:DP:GQ:PL    1/1:1,25:26:75.25:1062,75,0
13    30521992    rs503693    A    C    74.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-90M5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380640    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:106,9,0
13    30801363    rs202111    C    T    293.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
13    30804797    rs73163470    A    G    196.69    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=16.39;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    0/1:5,7:12:99:227,0,172
13    30805266    rs202085    T    A    75.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.11;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    0/1:2,3:5:61.07:106,0,61
13    30805305    rs202086    C    T    409.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:443,33,0
13    30805627    rs202087    A    G    588.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    1/1:0,20:20:48.13:622,48,0
13    30814918    rs202093    T    C    80.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.01;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:110,0,67
13    30814939    rs17505204    G    A    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.48;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    0/1:3,2:5:67.42:67,0,98
13    30814943    rs202094    C    T    78.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.79;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:109,0,70
13    30814962    rs202095    G    A    150.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=15.01;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    0/1:5,5:10:99:180,0,153
13    30854462    rs7317962    G    T    287.52    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.386;QD=22.12;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    0/1:4,9:13:99:318,0,123
13    30857565    rs8000334    A    T    72.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.37;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380615    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,138
13    31002373    rs2892546    G    A    388.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=53.73;MQ0=0;QD=25.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=UBE2L5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436446    GT:AD:DP:GQ:PL    1/1:0,15:15:39.08:422,39,0
13    31035467    rs41376448    G    GA    989.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.121;DB;DP=41;FS=0.0;HRun=10;HaplotypeScore=101.8423;IndelType=I;MQ=31.79;MQ0=20;MQRankSum=-1.325;QD=16.22;ReadPosRankSum=1.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326004    GT:AD:DP:GQ:PL    1/1:14,46:41:77.61:1031,78,0
13    31036642    rs3742305    C    G    4148.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=54.98;MQ0=0;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398908    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4148,307,0
13    31036681    rs1929606    A    G    4679.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7803;MQ=53.4;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=Y155;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_31036675_31036849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326004    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4680,364,0
13    31037903    rs2249825    G    C    673.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.44;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326004    GT:AD:DP:GQ:PL    1/1:0,21:21:60.15:707,60,0
13    31231513    rs7983138    C    T    286.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255304    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
13    31231806    rs7984952    T    C    2521.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9317;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_AMINO_ACID_CHANGE=L531S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_31231611_31233686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255304    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2554,193,0
13    31233063    rs3742302    G    A    2954.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=S950N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_31231611_31233686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255304    GT:AD:DP:GQ:PL    1/1:0,89:90:99:2987,217,0
13    31318308    rs3803277    C    A    510.75    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.75;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.639;QD=19.64;ReadPosRankSum=0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380490    GT:AD:DP:GQ:PL    0/1:8,18:26:99:541,0,208
13    31330284    rs12721458    G    C    58.99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.43;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380490    GT:AD:DP:GQ:PL    0/1:4,3:7:88.99:89,0,144
13    31330316    rs4468448    T    C    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.86;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380490    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,113
13    31337877    rs4769060    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX5AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380490    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
13    31480827    rs9531945    A    G    168.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.14;SNPEFF_AMINO_ACID_CHANGE=R59G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_31480328_31480930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380482    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:202,18,0
13    31495116    .    A    G    253.48    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.157;QD=19.5;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380482    GT:AD:DP:GQ:PL    0/1:4,9:13:99:283,0,126
13    31531195    rs6560988    T    C    945.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C13orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380473    GT:AD:DP:GQ:PL    1/1:0,30:30:81.24:978,81,0
13    31715015    rs10507397    T    C    95.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438061    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
13    31722620    rs35594388    TA    T    290.53    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.214;DB;DP=75;FS=2.494;HRun=17;HaplotypeScore=330.8003;IndelType=D;MQ=55.47;MQ0=0;MQRankSum=2.451;QD=3.82;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320027    GT:AD:DP:GQ:PL    0/1:29,31:75:60.34:330,0,60
13    31722709    rs59707528    CAA    C    103.36    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=18;FS=0.0;HRun=18;HaplotypeScore=193.0748;IndelType=D;MQ=47.45;MQ0=0;MQRankSum=0.566;QD=5.44;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320027    GT:AD:DP:GQ:PL    0/1:13,5:18:50.30:142,0,50
13    31725260    rs11556147    A    G    2028.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=F203;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_31725084_31725328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380406    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2061,162,0
13    31725617    rs2146895    C    T    322.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320027    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
13    31725732    rs4941772    A    C    995.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320027    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1028,75,0
13    31728657    rs4943165    T    C    916.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.99;MQ0=0;QD=39.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320027    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:949,69,0
13    31728666    rs2274018    G    A    979.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320027    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1013,75,0
13    31729729    rs1047086    A    G    2275.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=N127;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_31729651_31729791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438061    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2309,178,0
13    31733195    rs7988806    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320027    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
13    31789169    rs35344913    CT    C    1189.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.0;HRun=14;HaplotypeScore=288.2391;IndelType=D;MQ=59.02;MQ0=0;QD=15.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:6,65:75:99:1232,183,0
13    31796969    rs2147515    G    C    165.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
13    31821088    rs71192686    C    CT    113.52    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.277;DB;DP=26;FS=0.0;HRun=15;HaplotypeScore=194.2748;IndelType=I;MQ=49.32;MQ0=0;MQRankSum=-0.523;QD=4.37;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    0/1:15,10:26:99:153,0,102
13    31821256    rs9542307    C    G    225.09    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.487;DB;DP=29;Dels=0.0;FS=5.452;HRun=0;HaplotypeScore=0.8667;MQ=57.57;MQ0=0;MQRankSum=0.905;QD=7.76;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    0/1:17,12:29:99:255,0,557
13    31821992    rs4943266    T    C    733.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=H116;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_31821992_31822103;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:767,60,0
13    31835268    rs34409451    AC    A    419.96    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=21;FS=0.0;HRun=1;HaplotypeScore=53.2045;IndelType=D;MQ=60.45;MQ0=0;MQRankSum=-0.253;QD=20.0;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    0/1:9,12:21:99:459,0,306
13    31843598    rs1924817    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    31848535    rs912600    G    A    508.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:541,39,0
13    31850714    rs1028751    G    C    247.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
13    31850989    rs4065552    G    A    386.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:419,30,0
13    31851059    rs1409373    A    G    139.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:172,15,0
13    31891561    rs1041074    T    C    686.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=29.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:720,57,0
13    31891746    rs1041073    G    A    2159.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=E370K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_31891703_31891822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2193,162,0
13    31903834    rs1060709    G    T    919.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.45;MQ0=0;QD=30.66;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    1/1:0,30:30:69.23:953,69,0
13    31903841    rs112937254    A    G    236.75    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.48;DB;DP=25;Dels=0.0;FS=2.706;HRun=0;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;MQRankSum=1.01;QD=9.47;ReadPosRankSum=0.888;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343307    GT:AD:DP:GQ:PL    0/1:17,8:25:99:267,0,549
13    32057652    rs12877618    G    A    454.23    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.302;DB;DP=28;Dels=0.0;FS=1.536;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=16.22;ReadPosRankSum=-0.998;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,16:28:99:484,0,383
13    32057843    rs512282    A    G    173.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
13    32332217    rs9594382    G    A    151.28    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=21.61;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    0/1:2,5:7:49.35:181,0,49
13    32332661    rs1571311    T    C    112.61    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.529;QD=9.38;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    0/1:7,5:12:99:143,0,245
13    32332680    rs1571312    T    C    110.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.219;QD=12.29;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,135
13    32336040    rs1536635    C    T    78.01    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.6;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    0/1:2,3:5:58.91:108,0,59
13    32339382    rs12870532    C    T    62.88    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=6.29;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    0/1:6,4:10:92.88:93,0,217
13    32339465    rs7991339    T    G    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
13    32340193    rs77129735    T    TA    525.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=8;HaplotypeScore=41.113;IndelType=I;MQ=59.36;MQ0=0;QD=27.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    1/1:2,16:19:51.02:567,51,0
13    32360547    rs7325513    A    G    665.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.826;DB;DP=42;Dels=0.0;FS=2.659;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=2.326;QD=15.85;ReadPosRankSum=1.156;SNPEFF_AMINO_ACID_CHANGE=E295;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32360520_32360591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380314    GT:AD:DP:GQ:PL    0/1:18,24:42:99:696,0,587
13    32360691    rs71941366    T    TAA    554.82    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.277;DB;DP=52;FS=4.18;HRun=10;HaplotypeScore=199.7124;IndelType=I;MQ=57.76;MQ0=0;MQRankSum=-1.012;QD=10.67;ReadPosRankSum=-0.907;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    0/1:33,17:52:99:594,0,721
13    32371651    rs7322562    T    C    349.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:383,30,0
13    32376718    rs7338341    A    G    282.87    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-2.011;QD=17.68;ReadPosRankSum=0.212;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RXFP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298386    GT:AD:DP:GQ:PL    0/1:7,9:16:99:313,0,240
13    32660137    rs423932    T    G    2210.42    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=3.82;DB;DP=176;Dels=0.0;FS=3.544;HRun=1;HaplotypeScore=6.497;MQ=59.21;MQ0=0;MQRankSum=-1.139;QD=12.56;ReadPosRankSum=0.36;SNPEFF_AMINO_ACID_CHANGE=S53A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32659981_32660148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:93,83:176:99:2240,0,2874
13    32676114    rs364995    A    G    603.97    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.943;DB;DP=73;Dels=0.0;FS=2.259;HRun=0;HaplotypeScore=1.4725;MQ=58.85;MQ0=0;MQRankSum=-0.078;QD=8.27;ReadPosRankSum=1.005;SNPEFF_AMINO_ACID_CHANGE=T61;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32676100_32676153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:46,27:73:99:634,0,1392
13    32698544    rs629265    T    C    710.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    1/1:0,19:19:57.16:743,57,0
13    32706028    rs41308556    T    C    238.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.17;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.675;QD=7.94;ReadPosRankSum=-0.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:20,10:30:99:268,0,640
13    32708891    rs56151431    G    A    190.72    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.708;QD=17.34;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:3,8:11:99:221,0,99
13    32724035    rs41315032    G    A    129.20    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=9.94;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:8,5:13:99:159,0,280
13    32735444    .    G    GA    208.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.742;DP=18;FS=0.0;HRun=9;HaplotypeScore=43.6201;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=11.59;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:9,9:18:99:248,0,157
13    32758834    rs798971    A    G    451.29    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=31;Dels=0.0;FS=5.599;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.3;QD=14.56;ReadPosRankSum=-0.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:13,18:31:99:481,0,409
13    32776406    rs113076316    C    G    524.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.172;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6545;MQ=60.0;MQ0=0;MQRankSum=-0.654;QD=15.0;ReadPosRankSum=-0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:17,17:35:99:555,0,561
13    32786416    rs798983    T    A    117.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=11.77;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    0/1:4,6:10:99:148,0,108
13    32811607    rs2806639    G    A    2062.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=G1968S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32811516_32812123;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380250    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2095,153,0
13    32818070    rs2806624    A    G    318.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.05;MQ0=0;QD=26.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    1/1:0,11:12:30.07:352,30,0
13    32823882    rs2806630    G    A    289.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
13    32848907    rs147812266    TC    T    1482.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=5;HaplotypeScore=293.572;IndelType=D;MQ=55.15;MQ0=0;QD=27.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    1/1:8,46:54:99:1524,135,0
13    32849345    rs183269    A    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267067    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
13    32882912    rs34528008    G    GT    106.09    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.295;DB;DP=24;FS=0.0;HRun=9;HaplotypeScore=50.0844;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=0.983;QD=4.42;ReadPosRankSum=-1.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZAR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533490    GT:AD:DP:GQ:PL    0/1:18,6:24:99:145,0,259
13    32884653    rs206110    G    T    34.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZAR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533490    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:64,0,29
13    32884771    rs206111    T    C    207.30    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=22;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.134;QD=9.42;ReadPosRankSum=0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZAR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533490    GT:AD:DP:GQ:PL    0/1:13,9:22:99:237,0,371
13    32885654    rs445909    T    C    125.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=15.73;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=T137A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32885409_32886091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZAR1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345108    GT:AD:DP:GQ:PL    0/1:2,6:8:61.34:156,0,61
13    32885658    rs371193    G    A    113.73    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.22;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=P135;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32885409_32886091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZAR1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345108    GT:AD:DP:GQ:PL    0/1:2,5:8:65.40:144,0,65
13    32890572    rs1799943    G    A    215.09    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=13.44;ReadPosRankSum=1.059;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZAR1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345108    GT:AD:DP:GQ:PL    0/1:7,9:16:99:245,0,243
13    32900933    rs3752451    T    A    161.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=17.96;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    0/1:3,6:9:95.34:192,0,95
13    32905265    rs77968789    G    A    201.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:234,18,0
13    32906729    rs144848    A    C    3153.71    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=244;Dels=0.0;FS=3.605;HRun=0;HaplotypeScore=7.0653;MQ=59.81;MQ0=0;MQRankSum=0.817;QD=12.93;ReadPosRankSum=-0.283;SNPEFF_AMINO_ACID_CHANGE=N370H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32906409_32907428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530893    GT:AD:DP:GQ:PL    0/1:130,114:244:99:3184,0,4290
13    32911888    rs1801406    A    G    706.97    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=0.03;DB;DP=38;Dels=0.0;FS=4.947;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.314;QD=18.6;ReadPosRankSum=-0.209;SNPEFF_AMINO_ACID_CHANGE=K1132;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32910402_32915333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    0/1:15,23:38:99:737,0,464
13    32913055    rs206075    A    G    2803.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=L1521;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32910402_32915333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2837,208,0
13    32915005    rs206076    G    C    1119.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=36.1;SNPEFF_AMINO_ACID_CHANGE=V2171;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32910402_32915333;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1152,84,0
13    32915410    rs5802644    CAATT    C    611.86    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=4.149;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=129.0065;IndelType=D;MQ=55.9;MQ0=0;MQRankSum=-0.898;QD=21.1;ReadPosRankSum=0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    0/1:17,12:29:99:651,0,1057
13    32915524    rs11571662    C    A    72.92    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=9.12;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    0/1:5,3:8:99:103,0,185
13    32920844    rs206080    T    C    337.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
13    32929232    rs1799955    A    G    535.07    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=52;Dels=0.0;FS=1.132;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.247;QD=10.29;ReadPosRankSum=1.862;SNPEFF_AMINO_ACID_CHANGE=S2414;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32928998_32929425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    0/1:33,19:52:99:565,0,1107
13    32929387    rs169547    T    C    1089.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=V2466A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_32928998_32929425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    1/1:0,33:33:81.26:1122,81,0
13    32936646    rs9534262    T    C    438.30    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.699;DB;DP=44;Dels=0.0;FS=5.664;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.567;QD=9.96;ReadPosRankSum=-1.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    0/1:27,17:44:99:468,0,851
13    32951115    rs3764792    C    T    33.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.41;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    0/1:2,2:4:52.95:64,0,53
13    32953388    rs4942486    T    C    148.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=14.85;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380152    GT:AD:DP:GQ:PL    0/1:5,5:10:99:179,0,165
13    32971425    rs206344    T    C    86.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380130    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
13    32981279    rs3752448    T    A    87.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=7.31;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380130    GT:AD:DP:GQ:PL    0/1:6,6:12:99:118,0,209
13    33095620    rs621450    G    A    569.42    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.49;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.55;MQ0=0;MQRankSum=-0.808;QD=11.17;ReadPosRankSum=-0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267068    GT:AD:DP:GQ:PL    0/1:29,22:51:99:599,0,1031
13    33101731    rs391612    T    C    1147.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267068    GT:AD:DP:GQ:PL    1/1:0,31:31:87.29:1180,87,0
13    33101817    rs2239748    C    T    65.20    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=13.04;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267068    GT:AD:DP:GQ:PL    0/1:1,4:5:22.33:95,0,22
13    33222831    rs2301389    G    A    498.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.527;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=19.96;ReadPosRankSum=-0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    0/1:10,15:25:99:529,0,330
13    33232334    rs7335546    G    A    249.68    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.532;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=12.48;ReadPosRankSum=-0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    0/1:11,9:20:99:280,0,365
13    33232435    rs2301393    A    G    445.76    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.066;QD=10.87;ReadPosRankSum=-1.389;SNPEFF_AMINO_ACID_CHANGE=Q124;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_33232376_33232462;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    0/1:24,17:41:99:476,0,694
13    33232769    rs9591228    G    A    76.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.76;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482955    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,108
13    33268573    rs561056    T    C    214.60    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=16.51;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498550    GT:AD:DP:GQ:PL    0/1:6,7:13:99:245,0,218
13    33309563    rs17516382    C    G    253.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
13    33315188    .    G    GT    685.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=43;FS=0.0;HRun=1;HaplotypeScore=529.1178;IndelType=I;MQ=53.31;MQ0=0;MQRankSum=-1.108;QD=15.95;ReadPosRankSum=2.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    1/1:12,29:43:79.67:728,80,0
13    33315206    rs733487    G    A    770.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=6.2625;MQ=52.75;MQ0=0;QD=15.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    1/1:0,47:49:66.14:803,66,0
13    33320054    rs4942867    A    G    861.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    1/1:0,25:25:69.19:894,69,0
13    33332648    rs3752474    G    T    1924.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1957,153,0
13    33333876    rs7988089    A    C    581.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:615,51,0
13    33344241    rs112309957    AT    A    1572.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.0;HRun=10;HaplotypeScore=188.4175;IndelType=D;MQ=60.15;MQ0=0;QD=24.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315596    GT:AD:DP:GQ:PL    1/1:3,62:65:99:1615,186,0
13    33349235    rs67068819    C    CTTT    580.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=15;HaplotypeScore=283.7902;IndelType=I;MQ=52.49;MQ0=0;QD=15.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447833    GT:AD:DP:GQ:PL    1/1:20,12:38:52.53:622,53,0
13    33349341    rs3492    A    G    241.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDS5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447833    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:274,21,0
13    33590851    rs2772364    T    C    426.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.66;SNPEFF_AMINO_ACID_CHANGE=D91;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_33590571_33591397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380099    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:460,36,0
13    33627829    rs570875    T    G    487.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380099    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:520,42,0
13    33628531    .    T    C    99.78    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=9.07;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380099    GT:AD:DP:GQ:PL    0/1:6,5:11:99:130,0,221
13    33634983    rs564481    C    T    1257.50    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.394;DB;DP=81;Dels=0.0;FS=9.385;HRun=0;HaplotypeScore=0.8941;MQ=59.77;MQ0=0;MQRankSum=-0.241;QD=15.52;ReadPosRankSum=0.061;SNPEFF_AMINO_ACID_CHANGE=H589;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_33634816_33635917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380099    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1287,0,1169
13    33635463    rs648202    T    C    1121.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=30.31;SNPEFF_AMINO_ACID_CHANGE=A749;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_33634816_33635917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380099    GT:AD:DP:GQ:PL    1/1:0,37:37:93.28:1154,93,0
13    33635835    rs649964    T    C    1531.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.3;SNPEFF_AMINO_ACID_CHANGE=N873;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_33634816_33635917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380099    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1565,120,0
13    33635939    rs650439    T    A    1133.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426690    GT:AD:DP:GQ:PL    1/1:0,35:35:87.24:1167,87,0
13    33637913    rs34137141    C    CA    256.24    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.472;DB;DP=38;FS=0.0;HRun=14;HaplotypeScore=267.3836;IndelType=I;MQ=54.95;MQ0=0;MQRankSum=-0.535;QD=6.74;ReadPosRankSum=-2.551;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426690    GT:AD:DP:GQ:PL    0/1:22,13:38:67.41:295,0,67
13    33680044    rs475303    T    C    82.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255486    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
13    33680854    rs642899    T    G    2394.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.79;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255486    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2428,202,0
13    33681167    rs554588    C    A    592.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491333    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:626,48,0
13    33681318    rs2858821    C    T    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491333    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
13    33686575    rs520313    A    G    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399364    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
13    33686844    rs34128539    G    GA    4368.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.226;DB;DP=137;FS=0.0;HRun=8;HaplotypeScore=330.2042;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=-0.4;QD=31.89;ReadPosRankSum=-0.053;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399364    GT:AD:DP:GQ:PL    1/1:8,126:137:99:4368,363,0
13    33691953    rs7326364    A    G    78.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255486    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
13    33700374    rs1980781    T    G    3092.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2931;MQ=59.25;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=S524;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_33700218_33700377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399365    GT:AD:DP:GQ:PL    1/1:0,91:92:99:3126,235,0
13    33701347    rs2764617    C    T    31.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255486    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
13    33702869    rs9536486    T    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255486    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
13    33703656    rs495680    T    C    1769.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.14;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=E268;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_33703066_33704426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399365    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1803,138,0
13    33704065    rs3742321    T    C    1432.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=K132R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_33703066_33704426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399365    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1465,114,0
13    33739629    rs797232    G    A    430.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255486    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:464,36,0
13    33741559    rs797229    C    T    575.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255486    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:609,45,0
13    34404287    rs1041091    G    A    251    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380071    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
13    34535037    rs4943170    C    G    388.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434425    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:421,36,0
13    34539991    rs7321993    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
13    34837076    rs7984761    C    T    204.06    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.244;QD=12.0;ReadPosRankSum=2.098;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,7:17:99:234,0,291
13    34837149    rs1856285    A    G    712.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:746,57,0
13    35614903    rs1999171    T    C    510.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:544,39,0
13    35618968    rs7994430    G    T    59.80    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.098;QD=2.21;ReadPosRankSum=1.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    0/1:19,8:27:89.79:90,0,647
13    35618991    rs7996448    A    G    1057.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=57.94;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:0,34:34:90.25:1090,90,0
13    35731074    rs118045268    A    G    214.01    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.074;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=12.59;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    0/1:10,7:17:99:244,0,329
13    35806549    rs9565113    T    G    967.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:1001,75,0
13    35926497    rs9565205    A    G    961.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:995,75,0
13    36049080    rs9565317    T    G    190.91    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=11.23;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    0/1:10,7:17:99:221,0,359
13    36128856    rs6563020    G    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
13    36140924    rs9544666    C    T    663.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=39.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:696,51,0
13    36141009    rs9544667    G    A    2436.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.7;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2469,187,0
13    36224051    rs67269303    TACTGGG    T    1007.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=138.9268;IndelType=D;MQ=39.94;MQ0=0;QD=47.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:5,16:21:48.16:1050,48,0
13    36225929    rs7991019    T    C    536.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6297;MQ=58.95;MQ0=0;QD=24.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310336    GT:AD:DP:GQ:PL    1/1:0,22:22:45.14:569,45,0
13    36367641    rs1926459    G    C    719.14    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=47;Dels=0.0;FS=2.152;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=15.3;ReadPosRankSum=1.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:25,22:47:99:749,0,816
13    36382312    rs4421866    C    T    719.23    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.907;DB;DP=59;Dels=0.0;FS=1.801;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.281;QD=12.19;ReadPosRankSum=0.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:31,28:59:99:749,0,1111
13    36383264    rs9545424    G    A    159.66    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.307;DB;DP=19;Dels=0.0;FS=5.927;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=-0.658;QD=8.4;ReadPosRankSum=0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:13,6:19:99:190,0,438
13    36385031    rs2322807    G    T    1606.49    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.445;DB;DP=128;Dels=0.0;FS=2.351;HRun=0;HaplotypeScore=0.5784;MQ=59.85;MQ0=0;MQRankSum=0.385;QD=12.55;ReadPosRankSum=-0.159;SNPEFF_AMINO_ACID_CHANGE=P235;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_36384972_36385105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399319    GT:AD:DP:GQ:PL    0/1:73,55:128:99:1636,0,2409
13    36385199    rs3764060    T    G    333.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.11;MQ0=0;MQRankSum=-0.154;QD=12.82;ReadPosRankSum=-3.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:13,13:26:99:363,0,461
13    36397031    rs3751346    C    G    1073.44    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=0.39;DB;DP=74;Dels=0.0;FS=0.889;HRun=1;HaplotypeScore=3.6487;MQ=60.0;MQ0=0;MQRankSum=-2.165;QD=14.51;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1103,0,972
13    36401731    rs2225046    G    A    133.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.473;QD=8.89;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:9,6:15:99:163,0,291
13    36401746    rs9574698    A    G    618.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:652,51,0
13    36401909    rs9574699    T    C    1244.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    1/1:0,37:37:93.31:1277,93,0
13    36402009    rs9531099    A    G    411.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:445,33,0
13    36402067    rs9531100    A    G    133.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
13    36402152    rs2296643    T    G    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
13    36402325    rs2296644    T    A    507.80    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=35;Dels=0.0;FS=3.96;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.271;QD=14.51;ReadPosRankSum=0.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:17,18:35:99:538,0,494
13    36402475    rs2296646    G    A    760.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:794,60,0
13    36428595    rs1926466    C    T    210.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.608;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=15.06;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:6,8:14:99:241,0,212
13    36443088    rs12428685    T    C    66.48    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.84;MQ0=0;MQRankSum=0.322;QD=8.31;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:5,3:8:96.47:96,0,182
13    36443100    rs11147590    G    C    56.56    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.23;MQ0=0;MQRankSum=-0.37;QD=4.71;ReadPosRankSum=1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:9,3:12:86.56:87,0,328
13    36443324    rs7986427    G    A    582.90    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.245;DB;DP=48;Dels=0.0;FS=1.119;HRun=2;HaplotypeScore=0.9867;MQ=59.52;MQ0=0;MQRankSum=-0.906;QD=12.14;ReadPosRankSum=-1.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:26,22:48:99:613,0,733
13    36521460    rs1936003    A    G    103.87    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.53;MQ0=0;MQRankSum=0.509;QD=5.47;ReadPosRankSum=0.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255448    GT:AD:DP:GQ:PL    0/1:14,5:19:99:134,0,490
13    36745029    rs1328641    C    T    41.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.3;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:2,3:5:71.48:71,0,73
13    36747798    rs1410633    C    G    2289.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7351;MQ=59.31;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2323,172,0
13    36801415    rs9546785    C    T    978.35    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=69;Dels=0.0;FS=1.032;HRun=0;HaplotypeScore=0.9159;MQ=59.34;MQ0=0;MQRankSum=1.149;QD=13.98;ReadPosRankSum=0.872;SNPEFF_AMINO_ACID_CHANGE=G115R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_36801257_36801518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC169;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379864    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1008,0,930
13    36801579    rs9546786    A    G    311.01    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=25;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=0.027;QD=12.44;ReadPosRankSum=-0.952;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC169;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239859    GT:AD:DP:GQ:PL    0/1:12,13:25:99:341,0,422
13    36801587    rs9546787    T    A    222.71    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.45;MQ0=0;MQRankSum=-1.936;QD=10.61;ReadPosRankSum=-0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC169;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239859    GT:AD:DP:GQ:PL    0/1:11,10:21:99:253,0,385
13    36805166    rs9315397    T    C    101.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=14.53;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC169;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239859    GT:AD:DP:GQ:PL    0/1:3,4:7:99:132,0,103
13    36805289    rs139325511    GA    G    197.36    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.224;DB;DP=32;FS=0.0;HRun=9;HaplotypeScore=80.3175;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=-1.115;QD=6.17;ReadPosRankSum=0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC169;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239859    GT:AD:DP:GQ:PL    0/1:20,12:32:99:236,0,565
13    36822711    rs9315402    G    T    484.02    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=3.055;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.661;QD=21.04;ReadPosRankSum=-0.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC169;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471781    GT:AD:DP:GQ:PL    0/1:9,14:23:99:514,0,212
13    36822849    rs9315403    C    T    571.68    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.542;DB;DP=29;Dels=0.0;FS=2.56;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.108;QD=19.71;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:9,20:29:99:602,0,279
13    36822884    rs9315404    C    T    399.18    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.171;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.047;QD=21.01;ReadPosRankSum=2.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:7,12:19:99:429,0,192
13    36822908    rs9315405    C    T    220.02    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.0;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:3,7:10:96.79:250,0,97
13    36827772    rs9546884    C    T    111.22    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.9966;MQ=47.12;MQ0=0;MQRankSum=-1.92;QD=13.9;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:3,5:8:99:141,0,103
13    36827788    rs9546885    C    A    117.47    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=47.12;MQ0=0;MQRankSum=-1.818;QD=11.75;ReadPosRankSum=-1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:3,7:10:99:147,0,102
13    36827791    rs9531653    G    T    137.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=49.5;MQ0=0;MQRankSum=-1.835;QD=11.45;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:4,8:12:99:167,0,133
13    36827833    rs9546886    C    T    445.04    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.67;MQ0=0;MQRankSum=-0.936;QD=19.35;ReadPosRankSum=-0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:8,15:23:99:475,0,258
13    36827896    rs9546887    C    T    549.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.873;DB;DP=46;Dels=0.0;FS=5.519;HRun=0;HaplotypeScore=0.9665;MQ=57.02;MQ0=0;MQRankSum=-0.307;QD=11.94;ReadPosRankSum=1.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:23,23:46:99:579,0,787
13    36828092    .    G    GTTTTGTAAGCA    2359.51    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.213;DP=41;FS=0.0;HRun=0;HaplotypeScore=312.8608;IndelType=I;MQ=49.56;MQ0=0;MQRankSum=-5.268;QD=57.55;ReadPosRankSum=-0.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:31,9:41:99:2399,0,2241
13    36828237    rs9546897    T    C    501.71    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.176;DB;DP=54;Dels=0.0;FS=4.317;HRun=1;HaplotypeScore=0.9159;MQ=56.04;MQ0=0;MQRankSum=0.528;QD=9.29;ReadPosRankSum=-0.708;SNPEFF_AMINO_ACID_CHANGE=K120R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_36828182_36828280;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC169;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239859    GT:AD:DP:GQ:PL    0/1:34,20:54:99:532,0,1059
13    36828407    rs9546899    A    G    33.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.04;MQ0=0;MQRankSum=1.231;QD=5.59;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:4,2:6:63.53:64,0,100
13    36857468    rs1998797    C    T    47.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=4.73;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:6,4:10:77.26:77,0,228
13    36857479    rs1998798    A    G    129.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.8;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:6,5:11:99:160,0,215
13    36857500    rs1998799    A    C    267.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=19.09;ReadPosRankSum=0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:6,8:14:99:297,0,203
13    36857639    rs1998800    T    C    1113.27    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.628;DB;DP=80;Dels=0.0;FS=2.982;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.859;QD=13.92;ReadPosRankSum=-0.61;SNPEFF_AMINO_ACID_CHANGE=L94;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_36857606_36857646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC169;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239859    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1143,0,1226
13    36858016    rs3818459    C    T    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.99;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,144
13    36869843    rs9566063    G    C    496.70    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.27;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.686;QD=16.56;ReadPosRankSum=-1.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC169-SOHLH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511166    GT:AD:DP:GQ:PL    0/1:14,16:30:99:527,0,479
13    36871764    rs2281865    G    A    222.29    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.652;QD=13.08;ReadPosRankSum=-2.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355182    GT:AD:DP:GQ:PL    0/1:8,9:17:99:252,0,174
13    36886170    rs35914861    C    G    36.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.15;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482146    GT:AD:DP:GQ:PL    0/1:1,2:3:20.60:66,0,21
13    36886469    rs2274293    T    C    888.61    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.8;MQ0=0;MQRankSum=2.524;QD=9.66;ReadPosRankSum=-1.355;SNPEFF_AMINO_ACID_CHANGE=A543;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_36886456_36886614;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355182    GT:AD:DP:GQ:PL    0/1:56,36:92:99:919,0,1770
13    36900500    rs912926    G    A    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495783    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
13    36939688    rs3736919    C    T    3631.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355182    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3631,274,0
13    36939758    rs3736920    A    G    4087.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8699;MQ=59.82;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPG20OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379848    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4087,292,0
13    36940028    rs1041140    G    A    2398.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPG20OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379848    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2432,178,0
13    36940123    rs1041139    T    C    394.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPG20OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379848    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:427,36,0
13    37007040    rs4245378    A    G    778.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255465    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:811,60,0
13    37012866    rs78810484    T    G    124.92    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.104;DB;DP=45;Dels=0.0;FS=22.082;HRun=2;HaplotypeScore=2.8121;MQ=54.65;MQ0=0;MQRankSum=-0.046;QD=2.78;ReadPosRankSum=1.395;SNPEFF_AMINO_ACID_CHANGE=V208G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_37012781_37013004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440264    GT:AD:DP:GQ:PL    0/1:16,29:45:99:155,0,566
13    37014366    rs2282411    G    A    1950.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463403    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1984,144,0
13    37302575    rs7329182    A    G    1337.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL136160.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410670    GT:AD:DP:GQ:PL    1/1:0,37:38:99:1370,105,0
13    37401917    rs11285105    GT    G    312.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=6;HaplotypeScore=32.9543;IndelType=D;MQ=60.0;MQ0=0;QD=26.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFXAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472888    GT:AD:DP:GQ:PL    1/1:1,11:12:33.08:355,33,0
13    37423032    rs4943431    G    A    672.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350148    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:706,54,0
13    37439964    rs3748305    C    A    290.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350148    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:323,24,0
13    37524255    rs3818380    A    C    669.52    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.237;DB;DP=49;Dels=0.0;FS=6.248;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.01;QD=13.66;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239891    GT:AD:DP:GQ:PL    0/1:23,26:49:99:700,0,791
13    37526560    rs6563506    G    A    147.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239891    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:181,15,0
13    37546280    rs9576146    G    C    176.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=22.08;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239891    GT:AD:DP:GQ:PL    0/1:2,6:8:60.39:207,0,60
13    37563791    rs2243710    C    T    190.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=19.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239891    GT:AD:DP:GQ:PL    0/1:4,6:10:99:220,0,129
13    37569200    rs2323165    A    G    1107.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239891    GT:AD:DP:GQ:PL    1/1:0,39:39:84.25:1140,84,0
13    37580139    rs1127446    G    A    695.56    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=55.6;MQ0=0;MQRankSum=-0.172;QD=18.3;ReadPosRankSum=-0.047;SNPEFF_AMINO_ACID_CHANGE=Q107;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_37580057_37580162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389704    GT:AD:DP:GQ:PL    0/1:14,24:38:99:726,0,443
13    37581051    rs9576154    T    G    439.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470423    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:473,39,0
13    37583831    rs9469    G    A    1629.09    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.428;DB;DP=115;Dels=0.0;FS=3.563;HRun=0;HaplotypeScore=0.9665;MQ=59.6;MQ0=0;MQRankSum=-0.123;QD=14.17;ReadPosRankSum=-0.374;SNPEFF_AMINO_ACID_CHANGE=T773M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_37583631_37583946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350612    GT:AD:DP:GQ:PL    0/1:56,59:115:99:1659,0,1550
13    37584838    rs7317750    G    A    973.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EXOSC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239893    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1006,81,0
13    37597960    rs6563508    T    C    176.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476539    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
13    37598113    rs4943441    A    G    882.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476539    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:916,69,0
13    37600199    rs4941856    A    G    239.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350612    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:272,21,0
13    37600284    rs9576155    G    A    309.42    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.781;DB;DP=27;Dels=0.0;FS=9.748;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=11.46;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350612    GT:AD:DP:GQ:PL    0/1:15,12:27:99:339,0,458
13    37608666    rs2093817    G    A    427.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464572    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:461,36,0
13    37618442    rs34587536    CA    C    144.70    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=20;FS=0.0;HRun=8;HaplotypeScore=51.9925;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.313;QD=7.23;ReadPosRankSum=-1.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471868    GT:AD:DP:GQ:PL    0/1:12,8:20:99:184,0,242
13    37625459    rs1199974    C    T    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488590    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
13    37625601    rs1543738    T    C    1035.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488590    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1068,81,0
13    37625770    rs5802853    A    AG    317.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=14.534;IndelType=I;MQ=57.05;MQ0=0;QD=39.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FAM48A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350612    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:360,24,0
13    37804353    rs1408229    A    C    376.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:409,30,0
13    38138730    rs4390468    C    T    422.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=4.348;DB;DP=40;Dels=0.0;FS=3.901;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=10.57;ReadPosRankSum=-0.262;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474646    GT:AD:DP:GQ:PL    0/1:24,16:40:99:453,0,683
13    38144114    rs4628831    T    C    124.78    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.96;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    0/1:1,4:5:15.54:155,0,16
13    38144901    rs41306668    C    T    278.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=18.6;ReadPosRankSum=-0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    0/1:5,10:15:99:309,0,170
13    38152959    rs7322626    T    G    167.72    HaplotypeScoreFilter13    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=23;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=18.8616;MQ=48.84;MQ0=0;MQRankSum=-0.817;QD=7.29;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538347    GT:AD:DP:GQ:PL    0/1:5,10:23:67.91:198,0,68
13    38153130    rs7322993    T    C    834.35    PASS    AB=0.282;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.352;DB;DP=39;Dels=0.0;FS=7.72;HRun=2;HaplotypeScore=1.4972;MQ=57.59;MQ0=0;MQRankSum=-0.322;QD=21.39;ReadPosRankSum=0.483;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538347    GT:AD:DP:GQ:PL    0/1:11,28:39:99:864,0,310
13    38153351    rs7323378    T    C    722.10    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.375;DB;DP=46;Dels=0.0;FS=1.518;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=15.7;ReadPosRankSum=-0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538347    GT:AD:DP:GQ:PL    0/1:21,25:46:99:752,0,750
13    38154161    rs73182687    G    A    211.40    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.148;DB;DP=28;Dels=0.03;FS=0.0;HRun=1;HaplotypeScore=1.8824;MQ=59.2;MQ0=0;MQRankSum=-0.885;QD=7.29;ReadPosRankSum=-0.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    0/1:19,9:28:99:241,0,666
13    38154189    rs7986347    G    A    193.24    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.307;DB;DP=22;Dels=0.0;FS=2.881;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.375;QD=8.78;ReadPosRankSum=-0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    0/1:14,8:22:99:223,0,460
13    38154959    rs9576307    G    C    68.02    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.333;QD=4.86;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    0/1:9,5:14:98.01:98,0,324
13    38156706    rs2274082    T    G    52.09    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.761;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.254;QD=4.01;ReadPosRankSum=0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    0/1:10,3:13:82.09:82,0,362
13    38164445    rs1006416    G    A    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    38166357    rs9603229    T    G    770.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.02;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:803,63,0
13    38166418    rs72193430    GT    G    81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=10;FS=0.0;HRun=8;HaplotypeScore=62.1883;IndelType=D;MQ=62.13;MQ0=0;MQRankSum=0.198;QD=8.1;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379742    GT:AD:DP:GQ:PL    0/1:5,5:10:51.47:120,0,51
13    38172867    rs17197663    G    A    763.86    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.338;DB;DP=59;Dels=0.0;FS=2.23;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.276;QD=12.95;ReadPosRankSum=0.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POSTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538347    GT:AD:DP:GQ:PL    0/1:35,24:59:99:794,0,1081
13    38213053    rs73184537    A    G    249.07    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.775;QD=10.38;ReadPosRankSum=0.894;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338947    GT:AD:DP:GQ:PL    0/1:15,9:24:99:279,0,561
13    38237872    rs2985171    A    G    984.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338947    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1018,81,0
13    38266000    rs7329237    G    T    302.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338947    GT:AD:DP:GQ:PL    1/1:0,11:11:30.04:336,30,0
13    38320594    rs35278654    TA    T    1797.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.694;DB;DP=104;FS=4.74;HRun=12;HaplotypeScore=363.2971;IndelType=D;MQ=60.22;MQ0=0;MQRankSum=0.581;QD=17.12;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338947    GT:AD:DP:GQ:PL    1/1:15,86:104:99:1840,195,0
13    38320701    rs145340018    CG    C    466.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=3;HaplotypeScore=110.9132;IndelType=D;MQ=58.05;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338947    GT:AD:DP:GQ:PL    1/1:19,5:24:53.92:509,54,0
13    38320704    rs79807497    G    T    161.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.817;DB;DP=20;Dels=0.05;FS=0.0;HRun=13;HaplotypeScore=7.6788;MQ=57.77;MQ0=0;MQRankSum=-0.718;QD=7.71;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338947    GT:AD:DP:GQ:PL    1/1:8,12:20:18.05:195,18,0
13    38357024    rs67971290    AG    A    239.24    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.539;DB;DP=24;FS=3.183;HRun=1;HaplotypeScore=111.7051;IndelType=D;MQ=52.87;MQ0=0;MQRankSum=0.231;QD=9.97;ReadPosRankSum=2.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338947    GT:AD:DP:GQ:PL    0/1:18,6:24:99:278,0,285
13    38357471    rs3904512    G    A    907.44    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=54;Dels=0.0;FS=7.187;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=2.168;QD=16.8;ReadPosRankSum=-0.156;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379679    GT:AD:DP:GQ:PL    0/1:25,29:54:99:937,0,842
13    38357600    rs9594231    C    A    99.97    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.11;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338947    GT:AD:DP:GQ:PL    0/1:4,5:9:99:130,0,139
13    38923863    rs2231328    T    C    169.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239878    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
13    38924083    rs2231330    A    T    3655.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5253;MQ=59.21;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239878    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3656,265,0
13    38924263    rs2231332    T    C    2048.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=29.69;SNPEFF_AMINO_ACID_CHANGE=A4;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_38924252_38924364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379641    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2081,165,0
13    38930783    rs2455410    G    A    121.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464423    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
13    38930893    rs2481880    C    T    806.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=52.91;MQ0=0;QD=26.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464423    GT:AD:DP:GQ:PL    1/1:0,29:31:63.20:839,63,0
13    38931144    rs9548318    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464423    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    38932208    rs9576514    A    T    146.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.43;MQ0=0;QD=14.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464423    GT:AD:DP:GQ:PL    1/1:0,10:10:15.05:180,15,0
13    38932545    rs11381230    G    GT    733.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=11;HaplotypeScore=112.813;IndelType=I;MQ=57.41;MQ0=0;QD=22.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464423    GT:AD:DP:GQ:PL    1/1:5,25:32:77.99:775,78,0
13    38932648    rs2485786    C    T    121.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464423    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
13    38932681    rs2485785    G    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464423    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
13    39262057    rs1868464    G    A    172.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=E192;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_39261266_39266654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
13    39263714    rs2496423    T    C    1631.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=S745P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_39261266_39266654;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1664,132,0
13    39263731    rs41292755    C    T    592.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.579;DB;DP=49;Dels=0.0;FS=4.181;HRun=0;HaplotypeScore=0.5784;MQ=59.53;MQ0=0;MQRankSum=0.873;QD=12.08;ReadPosRankSum=0.042;SNPEFF_AMINO_ACID_CHANGE=D750;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_39261266_39266654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:28,21:49:99:622,0,747
13    39266484    rs1868463    G    A    666.43    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=2.448;DB;DP=67;Dels=0.0;FS=3.436;HRun=0;HaplotypeScore=3.8133;MQ=60.0;MQ0=0;MQRankSum=1.4;QD=9.95;ReadPosRankSum=-0.85;SNPEFF_AMINO_ACID_CHANGE=R1668H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_39261266_39266654;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:40,27:67:99:696,0,1207
13    39266862    rs2496427    T    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    39338612    rs2442370    T    C    438.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:471,36,0
13    39430314    rs9548509    C    T    1459.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.56;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=T2326I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_39430263_39430393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1492,111,0
13    39430443    rs9548510    G    A    336.54    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.388;DB;DP=38;Dels=0.0;FS=1.71;HRun=3;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.414;QD=8.86;ReadPosRankSum=-0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:22,16:38:99:367,0,675
13    39433606    rs9532292    A    G    1599.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=T2466;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_39433424_39433727;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1632,126,0
13    39433789    rs9576629    A    G    141.38    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=10.88;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:8,5:13:99:171,0,228
13    39433813    rs9594304    A    G    68.20    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=6.82;ReadPosRankSum=2.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:7,3:10:98.19:98,0,210
13    39435552    rs36084034    C    CT    563.16    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.143;DB;DP=55;FS=0.0;HRun=11;HaplotypeScore=189.6013;IndelType=I;MQ=59.36;MQ0=0;MQRankSum=0.55;QD=10.24;ReadPosRankSum=1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:29,26:55:99:602,0,312
13    39435883    rs9548513    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    39438260    rs9566368    C    T    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    39438383    rs9566369    C    A    1167.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1200,87,0
13    39446796    rs79240489    G    A    310.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.555;QD=17.23;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:8,10:18:99:340,0,205
13    39446869    rs9532295    G    A    798.02    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.188;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.48;MQ0=0;MQRankSum=-0.948;QD=18.14;ReadPosRankSum=-2.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:19,25:44:99:828,0,604
13    39448476    rs4943614    T    C    78.01    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.6;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:108,0,68
13    39450139    rs1945510    A    C    1378.78    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=5.8;DB;DP=97;Dels=0.0;FS=3.37;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=0.279;QD=14.21;ReadPosRankSum=2.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:52,45:97:99:1409,0,1553
13    39450583    rs67517056    T    TA    161.97    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DB;DP=21;FS=4.771;HRun=14;HaplotypeScore=129.7217;IndelType=I;MQ=55.38;MQ0=0;MQRankSum=0.184;QD=7.71;ReadPosRankSum=-2.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:11,7:21:50.08:201,0,50
13    39451557    rs1945509    A    T    137.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=13.7;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:4,6:10:99:167,0,129
13    39452024    rs7332206    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    39452235    rs1540131    T    C    1526.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1559,114,0
13    39453273    rs6563647    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
13    39454843    rs41306662    G    A    308.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.564;DB;DP=32;Dels=0.0;FS=5.449;HRun=2;HaplotypeScore=1.7287;MQ=60.0;MQ0=0;MQRankSum=0.961;QD=9.63;ReadPosRankSum=-1.677;SNPEFF_AMINO_ACID_CHANGE=G3143;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_39454421_39460074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FREM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280481    GT:AD:DP:GQ:PL    0/1:16,16:32:99:338,0,566
13    39542312    rs9548571    C    T    55.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=11.14;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379631    GT:AD:DP:GQ:PL    0/1:2,3:5:66.53:86,0,67
13    39544621    .    G    A    246.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=15.41;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379631    GT:AD:DP:GQ:PL    0/1:8,8:16:99:277,0,290
13    39546530    rs8000175    C    G    293.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOML3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379631    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:327,27,0
13    39603406    .    AG    A    211.45    PASS    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=3.993;DP=47;FS=43.459;HRun=1;HaplotypeScore=340.78;IndelType=D;MQ=43.69;MQ0=0;MQRankSum=-2.477;QD=4.5;ReadPosRankSum=-4.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PROSER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350125    GT:AD:DP:GQ:PL    0/1:38,9:47:99:250,0,393
13    39613187    rs45604133    A    G    145.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=14.57;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NHLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379599    GT:AD:DP:GQ:PL    0/1:4,6:10:99:176,0,103
13    39618366    rs10534463    TTGTG    T    481.57    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.413;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=397.88;IndelType=D;MQ=57.13;MQ0=0;MQRankSum=-0.62;QD=7.52;ReadPosRankSum=-0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NHLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473371    GT:AD:DP:GQ:PL    0/1:42,11:64:99:521,0,894
13    39622075    rs9532318    T    C    633    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.727;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=59.63;MQ0=0;MQRankSum=-0.632;QD=12.41;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NHLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485407    GT:AD:DP:GQ:PL    0/1:27,24:51:99:663,0,825
13    40233294    rs7993729    T    G    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255468    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
13    40233404    rs7330515    T    C    100.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.191;QD=8.41;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255468    GT:AD:DP:GQ:PL    0/1:6,6:12:99:131,0,209
13    40233691    rs7330016    C    T    319.32    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=24;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=13.3;ReadPosRankSum=1.738;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542266    GT:AD:DP:GQ:PL    0/1:13,11:24:99:349,0,334
13    40239139    rs7991151    G    A    292.25    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=18.27;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255468    GT:AD:DP:GQ:PL    0/1:7,9:16:99:322,0,240
13    40253901    rs4941940    A    G    93.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422759    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
13    40254100    rs35515490    A    AT    580.14    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.12;DB;DP=42;FS=6.904;HRun=9;HaplotypeScore=93.9675;IndelType=I;MQ=59.16;MQ0=0;MQRankSum=1.222;QD=13.81;ReadPosRankSum=-1.005;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422759    GT:AD:DP:GQ:PL    0/1:20,22:42:99:619,0,279
13    40254281    rs35468663    TCAAA    T    273.93    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=58.5873;IndelType=D;MQ=52.45;MQ0=0;MQRankSum=-1.191;QD=21.07;ReadPosRankSum=-0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422759    GT:AD:DP:GQ:PL    0/1:7,6:13:99:313,0,457
13    40256483    rs4346098    G    A    93.30    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=6.66;ReadPosRankSum=1.344;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422759    GT:AD:DP:GQ:PL    0/1:10,4:14:99:123,0,338
13    40256588    rs4329796    T    C    86.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422759    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
13    40261522    rs9315724    A    G    263.33    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.425;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.598;QD=10.97;ReadPosRankSum=0.409;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465775    GT:AD:DP:GQ:PL    0/1:15,9:24:99:293,0,456
13    40261945    rs4129745    A    G    315.49    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=25;Dels=0.0;FS=3.074;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.638;QD=12.62;ReadPosRankSum=2.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537156    GT:AD:DP:GQ:PL    0/1:15,10:25:99:345,0,503
13    40263979    rs9548882    T    C    198.86    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DB;DP=24;Dels=0.0;FS=3.851;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=8.29;ReadPosRankSum=1.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460701    GT:AD:DP:GQ:PL    0/1:15,9:24:99:229,0,507
13    40264066    rs9603593    T    C    172.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=19.19;ReadPosRankSum=-1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460701    GT:AD:DP:GQ:PL    0/1:3,6:9:97.10:203,0,97
13    40268685    rs9603594    T    C    545.69    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.018;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.5;QD=16.05;ReadPosRankSum=0.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460701    GT:AD:DP:GQ:PL    0/1:16,18:34:99:576,0,566
13    40268930    rs9548886    A    G    603.57    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.733;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.41;MQ0=0;MQRankSum=0.95;QD=15.48;ReadPosRankSum=0.132;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460701    GT:AD:DP:GQ:PL    0/1:18,20:39:99:634,0,619
13    40293288    rs5803008    AT    A    561.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=9;HaplotypeScore=55.1052;IndelType=D;MQ=59.65;MQ0=0;QD=25.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255468    GT:AD:DP:GQ:PL    1/1:0,22:22:66.04:603,66,0
13    40297684    rs7985075    C    T    162.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255468    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
13    40298620    rs150372526    CT    C    264.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.2;DB;DP=50;FS=0.0;HRun=18;HaplotypeScore=302.8553;IndelType=D;MQ=53.69;MQ0=0;MQRankSum=1.2;QD=5.29;ReadPosRankSum=1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255468    GT:AD:DP:GQ:PL    1/1:22,22:50:56.77:307,57,0
13    40298805    rs9532421    C    T    843.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255468    GT:AD:DP:GQ:PL    1/1:0,25:25:69.16:876,69,0
13    40301763    rs9548899    T    A    212.15    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=23;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.385;QD=9.22;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255468    GT:AD:DP:GQ:PL    0/1:12,11:23:99:242,0,435
13    41032459    rs4941979    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-350A18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542632    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
13    41032620    rs72171511    GCA    G    394.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=59.1981;IndelType=D;MQ=58.13;MQ0=0;QD=24.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-350A18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542632    GT:AD:DP:GQ:PL    1/1:4,12:16:36.11:437,36,0
13    41032853    rs9549215    C    G    873.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.03;MQ0=0;QD=36.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-350A18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400430    GT:AD:DP:GQ:PL    1/1:1,23:24:66.22:907,66,0
13    41485668    rs1989252    T    C    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUGT1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304932    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
13    41486986    rs7989416    T    C    80.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.46;MQ0=0;QD=26.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUGT1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304932    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
13    41488419    rs147347782    C    CA    245.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=12.7586;IndelType=I;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUGT1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304932    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
13    41495549    .    A    G    173.89    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.327;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.99;MQ0=0;MQRankSum=1.837;QD=9.15;ReadPosRankSum=-2.327;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUGT1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456963    GT:AD:DP:GQ:PL    0/1:10,9:19:99:204,0,328
13    41495924    rs9566607    G    T    189.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.05;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUGT1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304932    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:222,18,0
13    41515371    rs7987185    C    T    1159.29    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.955;DB;DP=102;Dels=0.0;FS=22.267;HRun=0;HaplotypeScore=1.399;MQ=57.28;MQ0=0;MQRankSum=-0.727;QD=11.37;ReadPosRankSum=-0.458;SNPEFF_AMINO_ACID_CHANGE=S290;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_41515057_41515506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442101    GT:AD:DP:GQ:PL    0/1:51,45:102:99:1189,0,1206
13    41533052    rs7799    T    C    513.09    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=42;Dels=0.0;FS=6.94;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=12.22;ReadPosRankSum=-0.379;SNPEFF_AMINO_ACID_CHANGE=N58S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_41532972_41533152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239882    GT:AD:DP:GQ:PL    0/1:23,19:42:99:543,0,691
13    41533398    rs2031661    C    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239882    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
13    41639425    rs72232770    T    TAA    148.01    PASS    AB=0.845;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=49;FS=0.0;HRun=21;HaplotypeScore=412.2269;IndelType=I;MQ=48.8;MQ0=0;MQRankSum=-1.086;QD=3.02;ReadPosRankSum=-2.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379487    GT:AD:DP:GQ:PL    0/1:35,7:49:5.40:186,0,5
13    41705495    rs584594    A    G    3522.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=L319;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_41704413_41706320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000499385    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3523,268,0
13    41706800    rs9566703    A    G    32.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.34;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_41701705_41706882;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379485    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
13    41767338    rs2039134    A    G    1146.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.67;MQ0=2;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=P254;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_41765991_41768281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000501885    GT:AD:DP:GQ:PL    1/1:0,37:37:93.29:1179,93,0
13    41767341    rs2039135    A    G    1070.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.29;MQ0=2;QD=28.17;SNPEFF_AMINO_ACID_CHANGE=H253;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_41765991_41768281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000501885    GT:AD:DP:GQ:PL    1/1:0,38:38:87.27:1103,87,0
13    41797601    rs2026469    A    T    599.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379477    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:633,48,0
13    41807950    rs3751344    T    C    468.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.871;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8268;MQ=60.0;MQ0=0;MQRankSum=-0.498;QD=15.63;ReadPosRankSum=-0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379477    GT:AD:DP:GQ:PL    0/1:15,15:30:99:499,0,483
13    41814277    rs9566727    C    T    43.51    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.715;QD=3.96;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486236    GT:AD:DP:GQ:PL    0/1:8,3:11:73.50:74,0,294
13    41828514    rs73179143    A    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239852    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
13    41834744    rs2297555    C    T    3792.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8614;MQ=59.11;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=E100;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_41834629_41835051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239852    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3793,292,0
13    41835039    rs9532758    T    C    735.04    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=43;Dels=0.0;FS=3.528;HRun=0;HaplotypeScore=0.734;MQ=59.85;MQ0=0;MQRankSum=-1.042;QD=17.09;ReadPosRankSum=0.934;SNPEFF_AMINO_ACID_CHANGE=N15S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_41834629_41835051;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430347    GT:AD:DP:GQ:PL    0/1:16,27:43:99:765,0,444
13    41835076    rs3215932    T    TA    619.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=9;HaplotypeScore=207.8576;IndelType=I;MQ=59.72;MQ0=0;QD=26.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492827    GT:AD:DP:GQ:PL    1/1:3,20:23:60.16:661,60,0
13    41835089    rs1332940    T    G    706.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=35.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492827    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:740,54,0
13    41893105    rs2065498    T    G    316.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379367    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:350,27,0
13    41902939    rs3812896    T    C    2125.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=N257;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_41902860_41902979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379367    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2159,157,0
13    41933227    rs5803087    TA    T    282.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=21.7187;IndelType=D;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403412    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:324,27,0
13    41941416    rs6560981    T    A    77.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379367    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
13    41948051    rs9525478    G    C    551.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463114    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:585,45,0
13    41949371    rs7320275    A    T    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    41949804    rs6560982    G    T    383.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463114    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:417,33,0
13    42032572    rs7136    T    C    40.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=5.75;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=S67;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42032421_42032606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379359    GT:AD:DP:GQ:PL    0/1:4,3:7:70.27:70,0,107
13    42040844    rs995845    G    T    167.50    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.66;QD=12.88;ReadPosRankSum=-1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379359    GT:AD:DP:GQ:PL    0/1:7,6:13:99:197,0,233
13    42043086    rs2324791    C    G    285.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487837    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
13    42044508    rs396963    A    G    330.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=27.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487837    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:364,33,0
13    42118556    rs348231    T    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354833.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408267    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
13    42118865    rs71086583    GACAC    G    451.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=189.0119;IndelType=D;MQ=55.86;MQ0=0;QD=19.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354833.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408267    GT:AD:DP:GQ:PL    1/1:12,9:23:36.02:494,36,0
13    42118880    rs9532894    A    G    72.20    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.528;DB;DP=19;Dels=0.0;FS=3.299;HRun=0;HaplotypeScore=16.7321;MQ=54.95;MQ0=0;MQRankSum=-0.231;QD=3.8;ReadPosRankSum=-2.546;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354833.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408267    GT:AD:DP:GQ:PL    1/1:14,5:19:12:105,12,0
13    42142592    rs9594576    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
13    42144480    rs9566791    T    C    88.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=5.92;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    0/1:9,6:15:99:119,0,323
13    42144853    rs9562321    A    G    499.11    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=0.353;QD=15.6;ReadPosRankSum=0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    0/1:14,18:32:99:529,0,409
13    42185696    rs3814782    T    C    1448.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;QD=30.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1481,114,0
13    42189232    rs3862741    C    G    833.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:866,63,0
13    42275473    rs7322461    A    G    1461.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1495,120,0
13    42293966    rs3818663    C    T    88.65    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=8.06;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    0/1:6,5:11:99:119,0,216
13    42303930    rs67369169    C    T    304.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:337,27,0
13    42303946    rs147910830    C    T    38.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9511;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=5.57;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    0/1:3,4:7:14.68:69,0,15
13    42357924    rs41288293    C    T    563.56    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.56;DB;DP=33;Dels=0.0;FS=1.945;HRun=1;HaplotypeScore=1.9892;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=17.08;ReadPosRankSum=1.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    0/1:15,18:33:99:594,0,527
13    42361743    rs112297676    T    TAC    280.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=62.7832;IndelType=I;MQ=60.72;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:7,8:15:21.07:323,21,0
13    42407738    rs35383891    A    G    254.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
13    42461189    rs7328609    C    A    199.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:232,18,0
13    42465490    rs7332372    C    T    1440.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9562;MQ=58.37;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1473,111,0
13    42481712    rs2003064    C    T    1328.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0564;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251030    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1361,99,0
13    42644580    rs7997363    A    T    738.18    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.432;DB;DP=49;Dels=0.0;FS=6.542;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-1.893;QD=15.06;ReadPosRankSum=0.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:23,26:49:99:768,0,750
13    42644679    rs2166619    C    T    1674.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1708,123,0
13    42701717    rs605371    A    G    264.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.098;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.893;QD=16.5;ReadPosRankSum=1.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:8,8:16:99:294,0,243
13    42701739    rs670676    A    T    194.56    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=14.97;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:6,7:13:99:225,0,205
13    42701803    rs957255    G    A    35.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.06;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:3,2:5:65.29:65,0,105
13    42703682    rs3742261    T    C    368.31    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.0;DB;DP=22;Dels=0.0;FS=7.908;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.033;QD=16.74;ReadPosRankSum=0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:10,12:22:99:398,0,317
13    42733328    rs2274287    A    G    52.12    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.12;MQ0=0;MQRankSum=1.221;QD=6.51;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:5,3:8:82.11:82,0,151
13    42734510    rs10492443    C    T    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
13    42740514    rs1475326    C    T    144.64    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=13.15;ReadPosRankSum=-2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:6,5:11:99:175,0,216
13    42740908    rs7329496    A    T    295.78    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=21.13;ReadPosRankSum=1.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:5,9:14:99:326,0,157
13    42743006    rs34761363    A    AT    229.77    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.245;DB;DP=22;FS=3.245;HRun=7;HaplotypeScore=49.723;IndelType=I;MQ=60.49;MQ0=0;MQRankSum=1.184;QD=10.44;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:13,9:22:99:269,0,233
13    42748118    rs71096559    T    TGC    351.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=67.818;IndelType=I;MQ=51.6;MQ0=0;QD=39.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    1/1:1,7:9:24.08:393,24,0
13    42748136    rs9590674    T    C    114.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.5;MQ0=0;MQRankSum=0.729;QD=11.43;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:5,5:10:88.03:144,0,88
13    42761399    rs17598471    A    G    182.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=10.13;ReadPosRankSum=-0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:10,8:18:99:212,0,369
13    42761457    rs12876247    C    T    33.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:63,0,29
13    42762971    rs2167059    G    A    125.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
13    42763054    rs2122246    G    A    328    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.423;QD=29.82;ReadPosRankSum=0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:1,10:11:7.56:358,0,8
13    42763140    rs2122247    G    A    763.80    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.601;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.257;QD=18.19;ReadPosRankSum=-1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:17,25:42:99:794,0,468
13    42763533    rs55656510    A    T    238.96    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=21.72;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:3,8:11:86.77:269,0,87
13    42764439    rs1170119    T    C    303.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    1/1:0,20:20:27.08:337,27,0
13    42764564    rs7324235    C    G    924.23    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.522;DB;DP=85;Dels=0.0;FS=2.966;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.96;QD=10.87;ReadPosRankSum=1.137;SNPEFF_AMINO_ACID_CHANGE=P401;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42764539_42764661;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538674    GT:AD:DP:GQ:PL    0/1:46,39:85:99:954,0,1641
13    42764742    rs34878220    G    GA    311.63    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=17;FS=0.0;HRun=7;HaplotypeScore=39.4682;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=18.33;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:6,11:17:96.77:351,0,97
13    42769253    rs71429407    A    G    82.42    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=14;Dels=0.0;FS=4.472;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=5.89;ReadPosRankSum=-2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:9,5:14:99:112,0,325
13    42769267    rs71429408    T    A    133.71    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.16;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:6,5:11:99:164,0,198
13    42769348    rs347392    T    A    164.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
13    42769399    rs238372    A    G    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
13    42773629    rs4942097    A    G    166.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.378;QD=13.91;ReadPosRankSum=-1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:6,6:12:99:197,0,210
13    42780148    rs34351817    CT    C    174.03    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.123;DB;DP=42;FS=0.0;HRun=17;HaplotypeScore=290.8061;IndelType=D;MQ=51.93;MQ0=0;MQRankSum=-0.736;QD=4.14;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:13,23:42:28.28:213,0,28
13    42780398    rs9594704    T    C    76.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=15.28;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:2,3:5:29.19:106,0,29
13    42783012    rs168329    G    A    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    42793194    rs9315898    A    T    321.78    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.397;DB;DP=34;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.5;QD=9.46;ReadPosRankSum=-0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489851    GT:AD:DP:GQ:PL    0/1:18,16:34:99:352,0,641
13    42793479    rs180870    G    A    1639.14    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.874;DB;DP=130;Dels=0.0;FS=6.609;HRun=1;HaplotypeScore=3.5969;MQ=59.86;MQ0=0;MQRankSum=0.689;QD=12.61;ReadPosRankSum=0.599;SNPEFF_AMINO_ACID_CHANGE=E1109;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42793366_42793485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:72,58:130:99:1669,0,2267
13    42793766    rs11277175    AGGTTTTTC    A    566.99    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=80.3433;IndelType=D;MQ=41.67;MQ0=0;MQRankSum=-2.166;QD=56.7;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489851    GT:AD:DP:GQ:PL    0/1:3,7:10:99:606,0,387
13    42794004    rs347382    G    A    470.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489851    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:504,39,0
13    42803100    rs386165    G    C    96.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:3,4:7:84.96:126,0,85
13    42803130    rs369829    A    G    146.54    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8583;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=13.32;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261491    GT:AD:DP:GQ:PL    0/1:5,6:11:99:177,0,172
13    42803263    rs17646069    T    C    605.92    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.629;DB;DP=47;Dels=0.0;FS=4.443;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.416;QD=12.89;ReadPosRankSum=-0.288;SNPEFF_AMINO_ACID_CHANGE=V1065A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42803235_42803386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536612    GT:AD:DP:GQ:PL    0/1:25,22:47:99:636,0,800
13    42803341    rs545602    T    C    468.07    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.852;DB;DP=41;Dels=0.0;FS=5.633;HRun=1;HaplotypeScore=2.6312;MQ=58.87;MQ0=0;MQRankSum=0.969;QD=11.42;ReadPosRankSum=-1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540693    GT:AD:DP:GQ:PL    0/1:21,20:41:99:498,0,660
13    42866389    rs147195786    G    A    155.87    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=22.27;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:2,5:7:54.49:186,0,54
13    42866795    rs77450477    A    G    59.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.45;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:5,3:8:89.60:90,0,178
13    42869720    rs36046057    A    AG    569.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=27.8729;IndelType=I;MQ=60.22;MQ0=0;QD=40.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:612,42,0
13    42870010    rs61959442    C    T    245.05    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=22.28;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:3,8:11:88.68:275,0,89
13    42872719    rs2273952    A    G    759.37    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.086;DB;DP=70;Dels=0.0;FS=2.089;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.257;QD=10.85;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=P134;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42872669_42872933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:38,32:70:99:789,0,1235
13    42872779    rs2273951    C    T    1101.35    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.539;DB;DP=73;Dels=0.0;FS=3.137;HRun=0;HaplotypeScore=0.9578;MQ=59.74;MQ0=0;MQRankSum=0.414;QD=15.09;ReadPosRankSum=0.579;SNPEFF_AMINO_ACID_CHANGE=Y154;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42872669_42872933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1131,0,1153
13    42875258    rs61741710    T    C    732.92    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.774;DB;DP=59;Dels=0.0;FS=9.733;HRun=1;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=-0.383;QD=12.42;ReadPosRankSum=-0.68;SNPEFF_AMINO_ACID_CHANGE=Y792;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42873499_42877999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:33,26:59:99:763,0,1006
13    42875683    rs41288309    A    G    815.91    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.088;DB;DP=58;Dels=0.0;FS=1.012;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.215;QD=14.07;ReadPosRankSum=0.918;SNPEFF_AMINO_ACID_CHANGE=N934S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42873499_42877999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:28,30:58:99:846,0,866
13    42877265    rs9315906    G    C    587.75    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.261;DB;DP=47;Dels=0.0;FS=1.189;HRun=0;HaplotypeScore=0.8667;MQ=59.51;MQ0=0;MQRankSum=0.443;QD=12.51;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=L1461;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42873499_42877999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:25,22:47:99:618,0,789
13    42882620    rs17521586    C    T    1341.61    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=2.96;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6584;MQ=59.81;MQ0=0;MQRankSum=-2.011;QD=11.09;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=T1716;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_42882590_42882745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    0/1:73,48:121:99:1372,0,2154
13    42882762    rs238314    A    G    2016.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000025301    GT:AD:DP:GQ:PL    1/1:0,56:57:99:2050,153,0
13    43148565    rs2296533    T    C    56.27    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=4.33;ReadPosRankSum=0.386;SNPEFF_AMINO_ACID_CHANGE=P42;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_43148289_43148658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239849    GT:AD:DP:GQ:PL    0/1:9,4:13:86.26:86,0,231
13    43155168    rs2277438    G    A    622.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239849    GT:AD:DP:GQ:PL    1/1:0,17:17:51.12:656,51,0
13    43155443    rs2277439    G    A    1286.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239849    GT:AD:DP:GQ:PL    1/1:0,38:38:96.32:1320,96,0
13    43358309    rs71202236    C    CT    212.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=20;HaplotypeScore=414.5098;IndelType=I;MQ=47.27;MQ0=0;QD=4.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313851    GT:AD:DP:GQ:PL    1/1:35,10:47:45.72:254,46,0
13    43360772    rs67256366    T    TA    505.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=12;HaplotypeScore=277.6764;IndelType=I;MQ=54.1;MQ0=0;QD=15.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313851    GT:AD:DP:GQ:PL    1/1:7,12:33:78.44:547,78,0
13    43362507    rs4941443    C    T    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.97;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313851    GT:AD:DP:GQ:PL    0/1:2,2:5:69.51:70,0,70
13    43362523    rs9525684    C    T    113.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=16.17;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313851    GT:AD:DP:GQ:PL    0/1:3,4:7:98.06:143,0,98
13    43462422    rs1044856    A    T    1982.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=N399K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_43460524_43462638;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313640    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2016,153,0
13    43474371    rs4942174    C    T    610.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313624    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:643,51,0
13    43491776    .    G    GAA    180.20    QDFilter2    AB=0.932;AC=1;AF=0.50;AN=2;BaseQRankSum=5.61;DP=124;DS;FS=8.728;HRun=3;HaplotypeScore=1372.304;IndelType=I;MQ=44.2;MQ0=0;MQRankSum=-4.771;QD=1.45;ReadPosRankSum=-3.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476830    GT:AD:DP:GQ:PL    0/1:115,5:124:99:219,0,1109
13    43491778    rs71202243    G    GA    1300.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DB;DP=127;DS;FS=0.0;HRun=17;HaplotypeScore=1356.0716;IndelType=I;MQ=43.4;MQ0=0;MQRankSum=-1.912;QD=10.24;ReadPosRankSum=-2.738;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476830    GT:AD:DP:GQ:PL    1/1:118,5:127:99:1342,209,0
13    43491871    rs17621929    C    T    779.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476830    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:812,60,0
13    43491940    rs12864209    C    T    203.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476830    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
13    43493632    rs7988150    A    G    130.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313624    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
13    43544964    rs9567077    G    T    277.42    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=25.22;ReadPosRankSum=1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313624    GT:AD:DP:GQ:PL    0/1:2,9:11:50.89:307,0,51
13    43566099    rs942311    T    A    757.81    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.603;DB;DP=59;Dels=0.0;FS=11.373;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=0.405;QD=12.84;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313624    GT:AD:DP:GQ:PL    0/1:27,32:59:99:788,0,695
13    43566373    rs3825511    A    C    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPSTI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536042    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
13    43597865    rs11617079    A    G    153.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=15.32;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=R35G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_43597339_43597870;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAJC15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379221    GT:AD:DP:GQ:PL    0/1:4,6:10:99:183,0,102
13    43660044    .    C    CATT    1198.13    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=74.2506;IndelType=I;MQ=54.42;MQ0=0;QD=54.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNAJC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379221    GT:AD:DP:GQ:PL    1/1:2,18:22:60.20:1240,60,0
13    43788031    rs1044753    C    T    955.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    1/1:1,30:31:78.24:988,78,0
13    43788158    rs703207    G    A    2380.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=L634;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_43787654_43788257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2414,184,0
13    43798406    rs1037023    C    T    131.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
13    43839494    rs4306408    G    A    3390.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.53;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    1/1:1,98:99:99:3391,250,0
13    43843812    rs730210    A    G    278.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.119;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.325;QD=15.47;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    0/1:9,9:18:99:308,0,289
13    43872419    rs4451860    C    T    773.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.04;FS=0.0;HRun=0;HaplotypeScore=2.9328;MQ=52.87;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:807,63,0
13    43872451    rs35698699    C    CA    259.74    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=1.856;DB;DP=43;FS=0.0;HRun=16;HaplotypeScore=454.3283;IndelType=I;MQ=51.94;MQ0=0;MQRankSum=-1.222;QD=6.04;ReadPosRankSum=0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    0/1:20,14:43:44.02:299,0,44
13    43872799    rs4456400    C    T    283.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
13    43872804    rs9533445    T    C    65.35    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.17;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    0/1:3,5:8:95.34:95,0,100
13    43900452    .    C    G    43.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=-1.38;QD=7.29;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    0/1:2,4:6:65.62:74,0,66
13    43930337    rs2281713    A    G    210.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=35.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482207    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
13    43935405    rs1535580    C    T    1288.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.873;DB;DP=45;Dels=0.0;FS=3.142;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.423;QD=28.63;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    1/1:2,43:45:63.55:1321,64,0
13    43986771    rs2296041    G    A    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261488    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
13    44404087    rs9567275    C    T    73.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC122;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470137    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:106,9,0
13    44404099    rs7337625    C    T    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC122;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470137    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    44411432    rs9567280    A    G    619.99    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.714;DB;DP=35;Dels=0.0;FS=14.129;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=17.71;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=I269T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_44411379_44411565;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC122;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444614    GT:AD:DP:GQ:PL    0/1:13,22:35:99:650,0,461
13    44433630    rs3088362    C    A    67.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC122;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281508    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:99,9,0
13    44433700    rs1562216    G    A    648.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC122;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281508    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:681,51,0
13    44434281    rs68005781    TAATG    T    243.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=38.6503;IndelType=D;MQ=47.12;MQ0=0;QD=40.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC122;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281508    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:285,15,0
13    44443039    rs4942252    C    T    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC122;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281508    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
13    44457925    rs3764147    A    G    332.56    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.616;DB;DP=45;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.643;QD=7.39;ReadPosRankSum=-0.466;SNPEFF_AMINO_ACID_CHANGE=I254V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_44457907_44458072;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325686    GT:AD:DP:GQ:PL    0/1:31,14:45:99:363,0,1036
13    44464090    rs7989857    C    T    105.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325686    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:138,12,0
13    44476660    rs111451174    C    T    197.59    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=57.59;MQ0=0;MQRankSum=-0.868;QD=13.17;ReadPosRankSum=-2.257;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,7:15:99:228,0,281
13    44476744    rs2325070    G    A    2436.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2470,181,0
13    44476793    rs2325071    T    C    2725.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0508;MQ=59.15;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2759,199,0
13    44543526    rs146178092    C    A    664.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.413;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.734;QD=31.66;ReadPosRankSum=0.083;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DGKZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325496    GT:AD:DP:GQ:PL    1/1:1,20:21:22.53:698,23,0
13    44543675    rs112866840    G    A    295.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DGKZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325496    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:328,27,0
13    44545226    rs3794438    C    A    331.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DGKZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325496    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:365,27,0
13    44545234    rs3794439    C    T    343.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DGKZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325496    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:377,30,0
13    44545355    rs8002094    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=25.11;MQ0=1;QD=8.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DGKZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325496    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:67,6,0
13    44545379    rs7981610    T    C    58.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=19.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=DGKZP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325496    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:91,9,0
13    44964723    rs2281848    C    T    274.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379179    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:307,24,0
13    44969907    rs1467624    G    A    2182.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=35.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379179    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2215,163,0
13    45010283    rs1555781    T    G    455.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC22D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472477    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:488,36,0
13    45090580    rs1336164    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC22D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458659    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
13    45563464    rs1140993    G    C    486.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=S36R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_45563160_45563618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUFIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379161    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:519,39,0
13    45589435    .    G    A    59.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=11.93;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1704;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357537    GT:AD:DP:GQ:PL    0/1:2,3:5:51.59:90,0,52
13    45710748    rs9534041    G    A    78.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=11.17;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340473    GT:AD:DP:GQ:PL    0/1:4,3:7:99:108,0,112
13    45725763    rs13378297    A    T    345.80    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.151;DB;DP=32;Dels=0.0;FS=3.038;HRun=3;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.228;QD=10.81;ReadPosRankSum=-0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340473    GT:AD:DP:GQ:PL    0/1:19,13:32:99:376,0,598
13    45768759    rs9534059    G    A    932.36    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.239;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.32;QD=15.04;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340473    GT:AD:DP:GQ:PL    0/1:30,31:62:99:962,0,1008
13    45826876    rs7982845    A    G    156.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340473    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:189,15,0
13    45826994    rs67520982    A    AT    534.47    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.038;DB;DP=55;FS=1.534;HRun=8;HaplotypeScore=116.0468;IndelType=I;MQ=60.2;MQ0=0;MQRankSum=0.679;QD=9.72;ReadPosRankSum=0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340473    GT:AD:DP:GQ:PL    0/1:33,21:55:99:573,0,670
13    45841502    rs7331090    G    A    984.97    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.216;DB;DP=72;Dels=0.0;FS=0.957;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.22;QD=13.49;ReadPosRankSum=0.378;SNPEFF_AMINO_ACID_CHANGE=K207;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_45841368_45841511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340473    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1015,0,1231
13    45857305    rs7320924    T    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340473    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
13    45857489    .    G    T    146.97    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.9635;MQ=45.63;MQ0=0;MQRankSum=-0.938;QD=7.35;ReadPosRankSum=1.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340473    GT:AD:DP:GQ:PL    0/1:4,16:20:46.41:177,0,46
13    45912634    rs9595305    T    C    59.43    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=11.89;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442760    GT:AD:DP:GQ:PL    0/1:1,4:5:29.73:89,0,30
13    45914957    rs2234216    T    C    244.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.14;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPT1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000527226    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:277,24,0
13    45973231    rs11330086    GA    G    519.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=14;HaplotypeScore=173.1521;IndelType=D;MQ=56.93;MQ0=0;QD=12.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463262    GT:AD:DP:GQ:PL    1/1:8,28:40:87.47:561,87,0
13    45976349    rs11617888    G    A    1021.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463262    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1055,78,0
13    45980223    rs35419409    AT    A    120.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=23.3383;IndelType=D;MQ=60.0;MQ0=0;QD=12.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519547    GT:AD:DP:GQ:PL    1/1:3,7:10:20.92:163,21,0
13    45982795    rs78234315    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519547    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    45982934    rs6561227    G    A    942.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519547    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:976,72,0
13    45985583    rs12872200    T    G    764.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_13_45985497_45985615;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310862    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:798,60,0
13    45985608    rs7997155    T    A    763.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC25A30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519547    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:796,57,0
13    46050519    rs2986001    T    C    490.36    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.063;DB;DP=37;Dels=0.0;FS=2.156;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=13.25;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    0/1:20,17:37:99:520,0,660
13    46056348    rs2985952    C    T    85.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
13    46066163    rs3014948    T    C    70.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:102,9,0
13    46067593    rs2985959    G    A    2720.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=E433;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46067482_46067621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2753,214,0
13    46077301    rs3014959    G    A    249.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:283,21,0
13    46077381    rs3014960    G    A    1068.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_AMINO_ACID_CHANGE=Q497;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46077379_46077484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1101,81,0
13    46083630    rs2985968    G    C    170.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
13    46085864    rs2985970    A    G    791.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:824,63,0
13    46098994    rs3014966    T    C    123.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
13    46099243    rs2985984    A    G    588.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,17:17:48.11:621,48,0
13    46103935    rs2274285    A    G    1047.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.4;SNPEFF_AMINO_ACID_CHANGE=N747S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46103926_46104053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1080,81,0
13    46104130    rs2274286    G    C    1193.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504261    GT:AD:DP:GQ:PL    1/1:0,34:34:90.30:1226,90,0
13    46104324    rs2985988    G    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504261    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    46104663    rs2404217    C    T    229.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504261    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:263,21,0
13    46108853    rs3014902    T    C    302.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_AMINO_ACID_CHANGE=L825S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46108837_46110765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,12:12:27.07:335,27,0
13    46108854    rs56244086    G    A    317.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.44;SNPEFF_AMINO_ACID_CHANGE=L825;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46108837_46110765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349995    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:350,27,0
13    46115731    rs1536207    C    A    1667.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=V653F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46115432_46115815;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298738    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1701,135,0
13    46115908    rs2985996    C    T    743.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482992    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:777,57,0
13    46124290    rs2860345    T    A    948.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298738    GT:AD:DP:GQ:PL    1/1:0,27:27:78.21:982,78,0
13    46135859    rs942889    C    T    170.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378977    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
13    46137837    rs3014917    T    C    1737.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298738    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1770,135,0
13    46148855    rs747652    A    G    320.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM194B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298738    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:353,27,0
13    46287153    rs9316154    A    C    45.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPERT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310521    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    46287373    rs80072371    C    A    365.69    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.238;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=58.95;MQ0=0;MQRankSum=0.238;QD=16.62;ReadPosRankSum=-1.109;SNPEFF_AMINO_ACID_CHANGE=C35*;SNPEFF_CODON_CHANGE=tgC/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_13_46287317_46288694;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPERT;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000378966    GT:AD:DP:GQ:PL    0/1:9,13:22:99:396,0,180
13    46288145    rs7317245    A    G    116.20    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.37;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=K293E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46287317_46288694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPERT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378966    GT:AD:DP:GQ:PL    0/1:1,5:6:25.60:146,0,26
13    46357405    rs67034111    T    TA    126.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;DB;DP=13;FS=0.0;HRun=14;HaplotypeScore=143.9455;IndelType=I;MQ=49.26;MQ0=0;MQRankSum=-1.044;QD=9.74;ReadPosRankSum=-0.348;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471241    GT:AD:DP:GQ:PL    1/1:6,5:13:9.37:168,9,0
13    46358320    rs34176505    CAACA    C    283.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=51.6386;IndelType=D;MQ=60.98;MQ0=0;QD=25.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400405    GT:AD:DP:GQ:PL    1/1:4,7:11:21.07:326,21,0
13    46541450    rs9534263    C    T    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
13    46541673    rs9534264    T    A    1405.73    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.182;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5953;MQ=59.04;MQ0=0;MQRankSum=0.011;QD=14.49;ReadPosRankSum=1.843;SNPEFF_AMINO_ACID_CHANGE=E1429D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46541639_46542163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    0/1:43,54:97:99:1436,0,1260
13    46543185    rs148627174    A    G    1593.90    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=4.14;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7217;MQ=59.76;MQ0=0;MQRankSum=-1.006;QD=16.43;ReadPosRankSum=0.488;SNPEFF_AMINO_ACID_CHANGE=V1165A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46542883_46544106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    0/1:43,54:97:99:1624,0,1066
13    46550061    rs11428563    G    GT    1967.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=1;HaplotypeScore=90.6208;IndelType=I;MQ=59.97;MQ0=0;QD=46.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    1/1:0,42:42:99:2009,126,0
13    46562935    rs1134071    A    G    673.38    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.453;DB;DP=43;Dels=0.0;FS=9.639;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.801;QD=15.66;ReadPosRankSum=-1.284;SNPEFF_AMINO_ACID_CHANGE=H230;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46562922_46563232;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431251    GT:AD:DP:GQ:PL    0/1:19,24:43:99:703,0,598
13    46563106    rs150109207    T    C    373.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=20;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.427;QD=18.68;ReadPosRankSum=1.273;SNPEFF_AMINO_ACID_CHANGE=P173;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46562922_46563232;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431251    GT:AD:DP:GQ:PL    0/1:8,12:20:99:404,0,252
13    46616462    rs3783200    A    C    402.76    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.297;DB;DP=34;Dels=0.0;FS=3.003;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=11.85;ReadPosRankSum=0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    0/1:20,14:34:99:433,0,671
13    46619026    rs962694    T    C    889.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:923,66,0
13    46619071    rs3736943    T    C    682.64    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.805;DB;DP=45;Dels=0.0;FS=1.552;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.329;QD=15.17;ReadPosRankSum=1.828;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    0/1:22,23:45:99:713,0,709
13    46619316    rs3736944    T    C    295.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=29.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:329,27,0
13    46627677    rs1049669    T    C    1082.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.8;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242848    GT:AD:DP:GQ:PL    1/1:0,33:33:84.25:1116,84,0
13    46629944    rs1926447    A    G    514.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.034;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.199;QD=11.43;ReadPosRankSum=0.971;SNPEFF_AMINO_ACID_CHANGE=I310T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46629897_46629984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439329    GT:AD:DP:GQ:PL    0/1:25,20:45:99:544,0,844
13    46629995    rs1926446    C    A    170.47    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.383;DB;DP=31;Dels=0.0;FS=2.593;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.399;QD=5.5;ReadPosRankSum=-1.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000181383    GT:AD:DP:GQ:PL    0/1:22,9:31:99:200,0,681
13    46632101    rs58925531    T    TA    198.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=9.4232;IndelType=I;MQ=62.13;MQ0=0;QD=39.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000181383    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
13    46632226    rs2296641    A    C    1079.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000181383    GT:AD:DP:GQ:PL    1/1:0,28:28:81.27:1112,81,0
13    46641466    rs9316179    A    G    316.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=35;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.7887;MQ=58.67;MQ0=0;MQRankSum=0.752;QD=9.05;ReadPosRankSum=0.612;SNPEFF_AMINO_ACID_CHANGE=D226;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46641442_46641552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000181383    GT:AD:DP:GQ:PL    0/1:21,14:35:99:347,0,616
13    46641481    rs7337140    T    C    976.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.433;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=58.84;MQ0=0;MQRankSum=0.987;QD=24.4;ReadPosRankSum=-0.605;SNPEFF_AMINO_ACID_CHANGE=P221;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46641442_46641552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000181383    GT:AD:DP:GQ:PL    1/1:2,38:40:45.45:1009,45,0
13    46648094    rs3742264    C    T    430.48    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.499;DB;DP=41;Dels=0.0;FS=1.342;HRun=2;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;MQRankSum=0.094;QD=10.5;ReadPosRankSum=-0.174;SNPEFF_AMINO_ACID_CHANGE=A169T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46648008_46648112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000181383    GT:AD:DP:GQ:PL    0/1:25,16:41:99:460,0,759
13    46656669    rs2296642    A    G    1180.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_AMINO_ACID_CHANGE=D97;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46656576_46656684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000181383    GT:AD:DP:GQ:PL    1/1:0,38:38:96.23:1214,96,0
13    46701678    rs145222892    G    A    535.56    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.543;DB;DP=44;Dels=0.0;FS=1.854;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=0.013;QD=12.17;ReadPosRankSum=-0.693;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323076    GT:AD:DP:GQ:PL    0/1:24,20:44:99:566,0,585
13    46701714    rs147626577    C    A    976.16    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.182;DB;DP=68;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=3.502;MQ=59.39;MQ0=0;MQRankSum=-2.069;QD=14.15;ReadPosRankSum=0.635;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323076    GT:AD:DP:GQ:PL    0/1:36,32:68:99:1006,0,1121
13    46708291    rs4941543    T    C    2193.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=K102E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_46708262_46708385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435666    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2226,166,0
13    46716264    rs7981864    G    A    161.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469227    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
13    46717246    rs2182485    T    C    91.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
13    46722358    rs117171283    C    T    581.68    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.426;DB;DP=43;Dels=0.0;FS=3.324;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.645;QD=13.53;ReadPosRankSum=-1.084;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416500    GT:AD:DP:GQ:PL    0/1:23,20:43:99:612,0,818
13    46722703    rs10631906    C    CTTAA    973.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=50.4696;IndelType=I;MQ=53.85;MQ0=0;QD=60.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416500    GT:AD:DP:GQ:PL    1/1:5,11:16:39.13:1016,39,0
13    46725270    rs147907557    T    C    401.28    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.68;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=16.72;ReadPosRankSum=-0.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416500    GT:AD:DP:GQ:PL    0/1:11,13:24:99:431,0,350
13    46728771    rs4258501    T    C    79.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442275    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
13    46728924    rs2296122    C    T    1367.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442275    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1400,102,0
13    46729112    rs2296120    A    C    249.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.37;QD=20.81;ReadPosRankSum=-1.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442275    GT:AD:DP:GQ:PL    0/1:3,9:12:92.64:280,0,93
13    46730507    rs74863187    C    T    789.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.628;QD=21.93;ReadPosRankSum=-0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442275    GT:AD:DP:GQ:PL    0/1:12,24:36:99:819,0,356
13    46733235    rs11841954    A    G    164.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.122;QD=9.13;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323076    GT:AD:DP:GQ:PL    0/1:10,8:18:99:194,0,322
13    46733240    rs9534343    A    G    169.23    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=9.95;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323076    GT:AD:DP:GQ:PL    0/1:10,7:17:99:199,0,325
13    46802668    rs625052    C    T    40.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.73;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378805    GT:AD:DP:GQ:PL    0/1:2,4:6:70.37:70,0,73
13    46803068    rs1230456    T    C    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378805    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:110,0,69
13    46808627    rs1230450    G    A    89.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=9.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378805    GT:AD:DP:GQ:PL    0/1:5,4:9:99:119,0,182
13    46836201    rs2764598    A    G    131.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378805    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
13    46930372    rs9526171    T    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0226L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322896    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:73,0,29
13    46937481    rs66912388    T    TA    186.12    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=19.3353;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=-0.573;QD=18.61;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0226L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417405    GT:AD:DP:GQ:PL    0/1:4,6:10:80.97:225,0,81
13    47256065    rs45439193    C    G    123.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=24.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
13    47260054    rs842381    T    C    692.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_AMINO_ACID_CHANGE=S234P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_47260040_47260176;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:726,60,0
13    47260337    rs842379    C    T    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    47261970    rs842375    T    C    1768.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1802,135,0
13    47267033    rs4284534    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463929    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
13    47269301    rs9316223    G    A    477.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=34.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463929    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:510,39,0
13    47273458    rs706621    G    C    1564.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3548;MQ=59.49;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1597,117,0
13    47279375    rs11483731    C    CT    1558.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=9;HaplotypeScore=213.6912;IndelType=I;MQ=59.65;MQ0=0;QD=26.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:9,48:58:99:1601,147,0
13    47279454    rs842387    A    G    1932.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6006;MQ=58.8;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1966,150,0
13    47286938    rs2762130    C    G    168.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
13    47297352    rs7319836    G    A    997.74    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=63;Dels=0.0;FS=2.358;HRun=0;HaplotypeScore=3.5043;MQ=59.63;MQ0=0;MQRankSum=-0.226;QD=15.84;ReadPosRankSum=0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    0/1:27,35:63:99:1028,0,820
13    47302934    rs3742273    T    A    1556.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1590,117,0
13    47308109    rs2298086    A    G    1564.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_AMINO_ACID_CHANGE=A652;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_47308056_47308133;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1597,123,0
13    47308201    rs117493342    C    G    212.56    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=14.17;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    0/1:8,7:15:99:243,0,292
13    47315525    rs6561329    G    T    257.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=36.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
13    47315984    rs3742274    T    C    3706.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.059;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.46;MQ0=0;MQRankSum=0.939;QD=30.63;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311191    GT:AD:DP:GQ:PL    1/1:1,120:121:99:3706,277,0
13    47345469    .    A    AT    61.95    QDFilter2    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DP=36;FS=0.0;HRun=14;HaplotypeScore=400.817;IndelType=I;MQ=51.03;MQ0=0;MQRankSum=-2.637;QD=1.72;ReadPosRankSum=-1.532;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378697    GT:AD:DP:GQ:PL    0/1:30,5:36:43.86:101,0,44
13    47358540    rs8192889    T    C    494.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378697    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:527,39,0
13    47466781    rs2296973    T    G    675.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.552;QD=35.53;ReadPosRankSum=-1.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378688    GT:AD:DP:GQ:PL    1/1:1,18:19:54.14:708,54,0
13    48522908    rs73187756    G    T    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331052    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
13    48528178    rs7334207    A    G    222.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433022    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:256,18,0
13    48547467    rs7320366    A    T    1741.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_AMINO_ACID_CHANGE=S129T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_48547399_48547527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378642    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1775,135,0
13    48547663    rs7326861    T    C    31.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331052    GT:AD:DP:GQ:PL    0/1:3,2:5:61.73:62,0,108
13    48563008    rs6561424    G    A    1546.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331052    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1580,117,0
13    48563246    rs6561425    A    G    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331052    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:122,9,0
13    48571213    rs8001509    C    T    467.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331052    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:500,36,0
13    48575204    rs45602539    C    T    34.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.36;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331052    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:64,0,33
13    48575292    rs9567972    C    T    211.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUCLA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331052    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
13    48653957    rs138539860    AAC    A    627.03    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=4.197;DB;DP=44;FS=1.443;HRun=0;HaplotypeScore=157.3477;IndelType=D;MQ=60.22;MQ0=0;MQRankSum=-0.135;QD=14.25;ReadPosRankSum=-2.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258648    GT:AD:DP:GQ:PL    0/1:26,18:44:99:666,0,1276
13    48660380    rs41287449    T    C    822.87    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.706;DB;DP=61;Dels=0.0;FS=2.429;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.007;QD=13.49;ReadPosRankSum=-0.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258648    GT:AD:DP:GQ:PL    0/1:34,27:61:99:853,0,1096
13    48664340    rs840427    A    T    924.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258648    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:957,72,0
13    48671081    rs1571256    A    G    597.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258648    GT:AD:DP:GQ:PL    1/1:0,21:21:48.14:631,48,0
13    48708811    rs9568011    C    T    57.01    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=4.07;ReadPosRankSum=-1.6;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-90M2.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438155    GT:AD:DP:GQ:PL    0/1:9,5:14:87:87,0,287
13    48919358    rs198617    T    G    2698.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267163    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2731,220,0
13    48921884    rs198616    A    G    567.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267163    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:601,45,0
13    48947469    rs185587    G    T    1683.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267163    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1717,132,0
13    48953655    rs112077712    C    CA    103.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=14;HaplotypeScore=34.1233;IndelType=I;MQ=63.02;MQ0=0;QD=14.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267163    GT:AD:DP:GQ:PL    1/1:0,6:7:17.84:146,18,0
13    48955201    rs2804085    T    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267163    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    48955676    rs2804086    T    A    131.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267163    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
13    48985439    rs4151551    G    T    462.89    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.915;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.42;MQ0=0;MQRankSum=0.356;QD=11.57;ReadPosRankSum=0.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LPAR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482024    GT:AD:DP:GQ:PL    0/1:23,17:40:99:493,0,813
13    49033747    rs198580    G    A    942.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480491    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:976,72,0
13    49034022    rs10648129    A    AT    604.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=57.4384;IndelType=I;MQ=53.24;MQ0=0;QD=40.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480491    GT:AD:DP:GQ:PL    1/1:1,14:15:45.15:647,45,0
13    49051012    rs3020646    C    T    1229.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267163    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1263,93,0
13    49326230    rs145032847    T    TG    2335.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=2;HaplotypeScore=105.9101;IndelType=I;MQ=60.77;MQ0=0;QD=41.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL137118.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410459    GT:AD:DP:GQ:PL    1/1:1,55:56:99:2378,166,0
13    49752915    rs1407826    A    G    318.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337156    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
13    49823287    rs3764131    A    T    173.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDADC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251108    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
13    49840024    rs6561512    A    G    1806.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=E147G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_49840015_49840046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDADC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538056    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1840,147,0
13    49840075    rs142130072    A    G    475.16    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=47;Dels=0.0;FS=6.465;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.764;QD=10.11;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDADC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538056    GT:AD:DP:GQ:PL    0/1:30,17:47:99:505,0,1012
13    49840290    rs7990341    G    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDADC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538056    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
13    49841499    rs7334929    T    G    199.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDADC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538056    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
13    49848711    rs7490591    A    G    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDADC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251108    GT:AD:DP:GQ:PL    1/1:0,2:2:6:66,6,0
13    49852430    rs2274149    T    G    2286.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDADC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251108    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2319,178,0
13    49865748    rs6561514    A    G    1836.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=59.34;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDADC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251108    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1869,156,0
13    49885216    rs912547    A    G    1138.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAB39L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347776    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1171,87,0
13    50008112    rs3764091    G    A    822.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136218.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400396    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:855,63,0
13    50008301    rs3764090    A    G    3750.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=C37;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50008222_50008359;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136218.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400396    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3750,277,0
13    50035042    rs2407689    T    C    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:78,6,0
13    50035048    rs721458    G    A    129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
13    50035151    rs721457    G    C    1777.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1811,132,0
13    50035208    rs2077848    G    A    3205.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3239,244,0
13    50037991    rs138819586    C    T    35.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.78;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:65,0,30
13    50038080    rs12429813    G    A    165.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
13    50050620    rs7998427    A    G    3331.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.77;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=E105G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50050612_50051175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,99:100:99:3331,274,0
13    50054308    rs4142285    G    A    1816.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1850,138,0
13    50054346    rs7996852    G    T    2543.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2577,190,0
13    50057097    rs2057413    G    A    910.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_AMINO_ACID_CHANGE=V461M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50056873_50057098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,27:27:69.21:944,69,0
13    50057287    rs2057414    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
13    50057633    rs11619265    A    G    535.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=Q472;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50057600_50057699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:568,42,0
13    50062327    rs959421    C    T    661.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:695,51,0
13    50064839    rs9568223    G    A    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETDB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258672    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    50080847    rs2031532    A    G    1153.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=32.94;SNPEFF_AMINO_ACID_CHANGE=L18;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50080771_50080892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357596    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1186,87,0
13    50087142    rs2247119    T    C    215.38    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=23.93;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357596    GT:AD:DP:GQ:PL    0/1:2,7:9:54.22:245,0,54
13    50092127    rs9568234    TACTC    T    1433.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=130.1413;IndelType=D;MQ=57.05;MQ0=0;QD=57.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357596    GT:AD:DP:GQ:PL    1/1:0,25:25:75.26:1475,75,0
13    50094922    .    C    T    195.93    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=21.77;ReadPosRankSum=-0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481509    GT:AD:DP:GQ:PL    0/1:2,7:9:41.37:226,0,41
13    50095127    rs3765526    A    G    865.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.03;MQ0=0;MQRankSum=1.589;QD=36.08;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481509    GT:AD:DP:GQ:PL    1/1:1,23:24:66.22:899,66,0
13    50095953    rs2274276    C    G    120.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481509    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
13    50096127    rs2274277    C    G    474.83    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.997;DB;DP=41;Dels=0.0;FS=2.052;HRun=0;HaplotypeScore=0.5784;MQ=59.44;MQ0=0;MQRankSum=0.629;QD=11.58;ReadPosRankSum=0.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481509    GT:AD:DP:GQ:PL    0/1:24,17:41:99:505,0,767
13    50098407    rs10596950    TAAAAC    T    1528.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=204.8136;IndelType=D;MQ=53.47;MQ0=0;QD=50.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442195    GT:AD:DP:GQ:PL    1/1:4,26:30:78.27:1570,78,0
13    50100389    rs7323493    T    C    120.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=24.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442195    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
13    50100627    rs150324912    GTT    G    648.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=4;HaplotypeScore=202.0838;IndelType=D;MQ=32.72;MQ0=0;QD=40.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442195    GT:AD:DP:GQ:PL    1/1:5,11:16:48.16:691,48,0
13    50100637    .    ATATT    A    869.57    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=251.3527;IndelType=D;MQ=30.93;MQ0=0;QD=51.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442195    GT:AD:DP:GQ:PL    1/1:2,15:17:48.16:912,48,0
13    50100647    rs61960012    C    T    126.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.22;MQ0=0;QD=7.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442195    GT:AD:DP:GQ:PL    1/1:0,18:18:15.03:159,15,0
13    50100667    rs6561533    G    A    189.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.61;MQ0=0;QD=12.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442195    GT:AD:DP:GQ:PL    1/1:0,15:15:18.05:223,18,0
13    50102810    rs1046295    G    A    1382.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460489    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1415,102,0
13    50107973    rs3186012    G    C    216.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PHF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357596    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:249,18,0
13    50108252    rs7317982    T    C    5631.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.66;DB;DP=184;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8305;MQ=59.75;MQ0=0;MQRankSum=1.694;QD=30.61;ReadPosRankSum=-0.086;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCBTB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471984    GT:AD:DP:GQ:PL    1/1:1,183:184:99:5632,409,0
13    50115669    rs1536195    C    T    547.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCBTB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546015    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:580,45,0
13    50123622    rs3751384    G    C    644.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=P339;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50123594_50123784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCBTB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258646    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:677,54,0
13    50126382    rs2274278    G    A    329.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=L215;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50126314_50126421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCBTB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258646    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:362,27,0
13    50129615    rs2274284    A    G    631.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCBTB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258646    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:664,51,0
13    50134358    rs12146924    T    C    255.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCBTB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258646    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:288,27,0
13    50141345    rs4942848    G    A    826.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=A24V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50141290_50141459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCBTB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258646    GT:AD:DP:GQ:PL    1/1:0,25:25:66.18:859,66,0
13    50205025    rs3803185    T    C    691.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_AMINO_ACID_CHANGE=C148R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50204566_50208008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282026    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:725,60,0
13    50244041    rs9535292    T    C    390.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242827    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:423,36,0
13    50260905    rs6561552    T    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242827    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    50275515    rs7446    C    T    42.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.25;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
13    50276679    rs12877931    C    T    172.12    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-2.694;QD=8.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    0/1:13,7:20:99:202,0,455
13    50284701    rs12875005    T    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    50296026    rs9535310    T    C    1007.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.23;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1040,75,0
13    50296115    rs1127021    C    T    1747.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=59.6;MQ0=0;QD=30.65;SNPEFF_AMINO_ACID_CHANGE=P234;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_50296091_50296260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1780,135,0
13    50299648    rs3215711    AC    A    119.71    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=63.3309;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=-0.369;QD=7.04;ReadPosRankSum=-0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    0/1:12,5:17:99:159,0,459
13    50299677    rs2273817    T    C    160.21    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=17.8;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    0/1:2,7:9:49.76:190,0,50
13    50306823    rs67014509    GA    G    361.07    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=3.969;DB;DP=59;FS=3.066;HRun=12;HaplotypeScore=156.6817;IndelType=D;MQ=59.79;MQ0=0;MQRankSum=-0.436;QD=6.12;ReadPosRankSum=2.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    0/1:33,25:59:99:400,0,560
13    50366743    .    A    AG    155.05    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=6;HaplotypeScore=52.0033;IndelType=I;MQ=59.73;MQ0=0;QD=31.01;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_50366574_50367057;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261667    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
13    50489083    rs1063183    A    G    79.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=9.95;ReadPosRankSum=-0.421;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361840    GT:AD:DP:GQ:PL    0/1:4,4:8:99:110,0,141
13    50501880    rs41308548    T    C    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492258    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
13    50510401    rs1063181    C    G    114.90    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=56.04;MQ0=0;MQRankSum=0.387;QD=9.57;ReadPosRankSum=1.031;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRYD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492258    GT:AD:DP:GQ:PL    0/1:7,5:12:99:145,0,212
13    50585900    rs2760919    T    C    136.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298772    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
13    51397440    rs9563002    C    A    761.07    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.89;DB;DP=56;Dels=0.0;FS=1.347;HRun=0;HaplotypeScore=0.0;MQ=45.02;MQ0=3;MQRankSum=0.407;QD=13.59;ReadPosRankSum=0.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DLEU7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400393    GT:AD:DP:GQ:PL    0/1:26,30:56:99:791,0,667
13    51530414    rs1328360    A    T    90.36    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.04;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASEH2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495244    GT:AD:DP:GQ:PL    0/1:5,4:9:99:120,0,167
13    51594741    rs1328361    T    G    591.17    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.44;DB;DP=46;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9832;MQ=59.5;MQ0=0;MQRankSum=0.165;QD=12.85;ReadPosRankSum=2.342;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUCY1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389600    GT:AD:DP:GQ:PL    0/1:24,22:46:99:621,0,616
13    51603768    rs9568497    T    C    304.21    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.164;DB;DP=28;Dels=0.0;FS=1.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.094;QD=10.86;ReadPosRankSum=-1.223;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUCY1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389600    GT:AD:DP:GQ:PL    0/1:17,11:28:99:334,0,535
13    51929375    rs9596506    T    C    1175.74    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.677;DB;DP=61;Dels=0.0;FS=5.416;HRun=0;HaplotypeScore=0.0;MQ=53.09;MQ0=0;MQRankSum=4.814;QD=19.27;ReadPosRankSum=3.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400389    GT:AD:DP:GQ:PL    0/1:23,38:61:99:1206,0,124
13    51953541    rs2274061    C    T    152.99    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.443;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=7.29;ReadPosRankSum=-0.784;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420668    GT:AD:DP:GQ:PL    0/1:15,6:21:99:183,0,524
13    51953840    rs3818360    C    T    109.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.951;QD=10.93;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420668    GT:AD:DP:GQ:PL    0/1:5,5:10:99:139,0,155
13    51956122    rs9526753    T    C    364.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=36.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420668    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:397,30,0
13    51963348    rs2274929    T    C    290.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=11.61;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311234    GT:AD:DP:GQ:PL    0/1:15,10:25:99:320,0,548
13    51969696    rs3825524    C    T    76.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.68;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INTS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311234    GT:AD:DP:GQ:PL    0/1:3,3:6:92.59:106,0,93
13    52277693    rs9535738    G    T    150.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.73;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298125    GT:AD:DP:GQ:PL    0/1:4,5:9:99:181,0,139
13    52293532    rs912097    T    C    1513.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298125    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1546,120,0
13    52313195    rs1885854    C    T    905.97    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.319;DB;DP=63;Dels=0.0;FS=2.095;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.062;QD=14.38;ReadPosRankSum=-2.195;SNPEFF_AMINO_ACID_CHANGE=T203;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52313185_52313311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298125    GT:AD:DP:GQ:PL    0/1:30,33:63:99:936,0,855
13    52330268    rs9526794    T    C    32.46    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=4.06;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460145    GT:AD:DP:GQ:PL    0/1:5,2:8:62.45:62,0,176
13    52333955    rs147876825    TTTAACCCAAATCA    T    1204.46    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=4.188;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=333.1354;IndelType=D;MQ=47.31;MQ0=0;MQRankSum=-4.243;QD=40.15;ReadPosRankSum=1.998;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDFY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298125    GT:AD:DP:GQ:PL    0/1:19,11:30:99:1243,0,2021
13    52345637    rs2296028    G    C    213.60    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.609;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6545;MQ=59.28;MQ0=0;MQRankSum=0.448;QD=8.22;ReadPosRankSum=1.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461948    GT:AD:DP:GQ:PL    0/1:16,10:26:99:244,0,423
13    52345781    rs57280031    T    C    282.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.306;QD=18.86;ReadPosRankSum=0.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461948    GT:AD:DP:GQ:PL    0/1:5,10:15:99:313,0,153
13    52345838    rs2296027    T    C    264.71    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.122;QD=13.93;ReadPosRankSum=-1.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461948    GT:AD:DP:GQ:PL    0/1:9,10:19:99:295,0,319
13    52351037    rs2296026    C    T    77.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.26;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218981    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:107,0,30
13    52373814    rs9535761    G    C    3787.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.8;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218981    GT:AD:DP:GQ:PL    1/1:0,116:117:99:3788,283,0
13    52389347    rs4290380    C    T    436.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.81;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5781;MQ=58.45;MQ0=0;MQRankSum=-0.81;QD=29.1;ReadPosRankSum=0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-327P2.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456688    GT:AD:DP:GQ:PL    1/1:1,14:15:2.13:466,2,0
13    52440130    rs1054515    A    G    780.64    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0957;MQ=59.52;MQ0=0;MQRankSum=0.848;QD=16.26;ReadPosRankSum=-1.049;SNPEFF_AMINO_ACID_CHANGE=I206V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52439468_52440366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000242819    GT:AD:DP:GQ:PL    0/1:20,28:48:99:811,0,608
13    52511362    rs9535795    C    G    151.74    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.666;QD=16.86;ReadPosRankSum=-0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482841    GT:AD:DP:GQ:PL    0/1:2,7:9:57.96:182,0,58
13    52511606    rs2282057    G    A    489.08    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.667;DB;DP=35;Dels=0.0;FS=1.423;HRun=0;HaplotypeScore=1.7306;MQ=58.67;MQ0=0;MQRankSum=-1.139;QD=13.97;ReadPosRankSum=-0.974;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482841    GT:AD:DP:GQ:PL    0/1:18,17:35:99:519,0,481
13    52515354    rs1801249    A    G    819.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.873;DB;DP=62;Dels=0.0;FS=0.998;HRun=5;HaplotypeScore=0.734;MQ=59.63;MQ0=0;MQRankSum=0.31;QD=13.22;ReadPosRankSum=0.267;SNPEFF_AMINO_ACID_CHANGE=V1029A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52515217_52515360;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400366    GT:AD:DP:GQ:PL    0/1:31,31:62:99:850,0,917
13    52520704    rs2296246    C    A    74.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.63;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242839    GT:AD:DP:GQ:PL    0/1:3,4:7:99:104,0,100
13    52523808    rs732774    C    T    977.23    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.59;DB;DP=79;Dels=0.0;FS=3.398;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=2.17;QD=12.37;ReadPosRankSum=0.877;SNPEFF_AMINO_ACID_CHANGE=R224K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52523798_52523932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417240    GT:AD:DP:GQ:PL    0/1:44,34:79:99:1007,0,1314
13    52524488    rs1061472    T    C    394.84    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=48;Dels=0.0;FS=4.488;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.517;QD=8.23;ReadPosRankSum=0.474;SNPEFF_AMINO_ACID_CHANGE=K104R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52524408_52524535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417240    GT:AD:DP:GQ:PL    0/1:31,17:48:99:425,0,928
13    52524560    rs9526811    C    T    276.23    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.436;DB;DP=32;Dels=0.0;FS=1.67;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.833;QD=8.63;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242839    GT:AD:DP:GQ:PL    0/1:21,11:32:99:306,0,709
13    52542796    rs2147363    T    G    302.14    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.951;DB;DP=21;Dels=0.0;FS=8.28;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=14.39;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242839    GT:AD:DP:GQ:PL    0/1:10,11:21:99:332,0,259
13    52544805    rs1801244    C    G    677.37    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.66;DB;DP=64;Dels=0.0;FS=2.25;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.468;QD=10.58;ReadPosRankSum=0.998;SNPEFF_AMINO_ACID_CHANGE=V345L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52544628_52544885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400366    GT:AD:DP:GQ:PL    0/1:37,26:64:99:707,0,1304
13    52548140    rs1801243    A    C    1561.30    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7273;MQ=59.49;MQ0=0;MQRankSum=-1.474;QD=17.16;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=S295A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52548071_52548220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400366    GT:AD:DP:GQ:PL    0/1:36,55:91:99:1591,0,1103
13    52549492    .    T    C    1292.66    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.621;DP=79;Dels=0.0;FS=0.894;HRun=0;HaplotypeScore=2.8774;MQ=59.12;MQ0=0;MQRankSum=0.036;QD=16.36;ReadPosRankSum=0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242839    GT:AD:DP:GQ:PL    0/1:34,45:79:99:1323,0,1052
13    52585548    rs2277448    G    T    182.65    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=55.3;MQ0=0;MQRankSum=-0.048;QD=10.74;ReadPosRankSum=-0.144;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521508    GT:AD:DP:GQ:PL    0/1:9,8:17:99:213,0,319
13    52602919    rs3825528    A    C    470.90    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.414;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=13.45;ReadPosRankSum=-2.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519151    GT:AD:DP:GQ:PL    0/1:19,16:35:99:501,0,645
13    52603194    rs3742289    G    T    2427.42    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.192;DB;DP=173;Dels=0.0;FS=4.984;HRun=0;HaplotypeScore=6.0041;MQ=59.78;MQ0=0;MQRankSum=0.597;QD=14.03;ReadPosRankSum=-0.519;SNPEFF_AMINO_ACID_CHANGE=G85V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52602455_52607701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP14C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521776    GT:AD:DP:GQ:PL    0/1:92,81:173:99:2457,0,2985
13    52603775    rs3742291    C    T    1770.72    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.797;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=0.792;QD=14.63;ReadPosRankSum=-1.046;SNPEFF_AMINO_ACID_CHANGE=L279;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52602455_52607701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP14C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000521776    GT:AD:DP:GQ:PL    0/1:64,57:121:99:1801,0,2011
13    52657287    rs9563091    A    G    48.35    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=57.66;MQ0=0;MQRankSum=-0.731;QD=4.84;ReadPosRankSum=2.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355568    GT:AD:DP:GQ:PL    0/1:7,3:10:78.34:78,0,215
13    52663491    rs9535861    A    G    307.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.248;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.182;QD=13.99;ReadPosRankSum=0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355568    GT:AD:DP:GQ:PL    0/1:11,11:22:99:338,0,354
13    52686240    rs9535866    T    C    33.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=8.41;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355568    GT:AD:DP:GQ:PL    0/1:2,2:4:63.63:64,0,73
13    52701490    rs3076657    A    ACTT    1984.09    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.155;DB;DP=78;FS=8.09;HRun=0;HaplotypeScore=244.0125;IndelType=I;MQ=58.65;MQ0=0;MQRankSum=-1.533;QD=25.44;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355568    GT:AD:DP:GQ:PL    0/1:45,33:78:99:2023,0,1812
13    52701637    rs1886544    T    G    786.96    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=78;Dels=0.0;FS=7.889;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.753;QD=10.09;ReadPosRankSum=1.189;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NEK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465811    GT:AD:DP:GQ:PL    0/1:46,32:78:99:817,0,1500
13    52701782    rs1886543    T    C    238.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=19.89;ReadPosRankSum=1.932;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258597    GT:AD:DP:GQ:PL    0/1:4,8:12:99:269,0,129
13    52707240    rs3368    C    G    263.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=21;Dels=0.0;FS=4.706;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=12.56;ReadPosRankSum=0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547820    GT:AD:DP:GQ:PL    0/1:12,9:21:99:294,0,354
13    52707751    rs3831081    T    TCA    538.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=158.1686;IndelType=I;MQ=50.65;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339406    GT:AD:DP:GQ:PL    1/1:15,5:24:48.09:581,48,0
13    52709742    rs2408611    G    A    237.34    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.022;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.22;QD=15.82;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339406    GT:AD:DP:GQ:PL    0/1:7,8:15:99:267,0,175
13    52710044    rs2296350    T    C    1424.12    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.789;DB;DP=114;Dels=0.0;FS=1.643;HRun=0;HaplotypeScore=2.5767;MQ=60.0;MQ0=0;MQRankSum=-0.233;QD=12.49;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339406    GT:AD:DP:GQ:PL    0/1:58,56:114:99:1454,0,1809
13    52710058    rs2296349    T    G    1410.98    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.976;DB;DP=92;Dels=0.0;FS=0.908;HRun=0;HaplotypeScore=0.8941;MQ=59.75;MQ0=0;MQRankSum=0.242;QD=15.34;ReadPosRankSum=0.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339406    GT:AD:DP:GQ:PL    0/1:45,47:92:99:1441,0,1470
13    52710136    rs2296348    T    G    973.03    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.431;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.855;QD=16.49;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339406    GT:AD:DP:GQ:PL    0/1:29,30:59:99:1003,0,1017
13    52718050    rs3837575    C    CT    169.15    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.372;DB;DP=17;FS=0.0;HRun=7;HaplotypeScore=39.3164;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=-1.215;QD=9.95;ReadPosRankSum=-0.521;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_13_52718051_52718122;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000339406    GT:AD:DP:GQ:PL    0/1:9,8:17:99:208,0,187
13    52728423    rs2296347    G    T    196.15    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.296;QD=19.61;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339406    GT:AD:DP:GQ:PL    0/1:3,7:10:87.82:226,0,88
13    52730056    rs9526843    C    T    211.23    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=14.08;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NEK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339406    GT:AD:DP:GQ:PL    0/1:8,7:15:99:241,0,269
13    52797537    rs11148246    C    T    589.04    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.443;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.3;MQ0=0;MQRankSum=0.714;QD=15.92;ReadPosRankSum=0.744;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-64P12.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422308    GT:AD:DP:GQ:PL    0/1:19,18:37:99:619,0,644
13    52803641    .    CT    C    101.07    QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DP=40;FS=1.96;HRun=19;HaplotypeScore=299.5459;IndelType=D;MQ=36.96;MQ0=4;MQRankSum=2.256;QD=1.77;ReadPosRankSum=1.728;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-64P12.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422308    GT:AD:DP:GQ:PL    0/1:35,10:40:99:140,0,125
13    52803669    .    C    G    131    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=0.655;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.47;MQ0=0;MQRankSum=-3.628;QD=3.54;ReadPosRankSum=0.336;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-64P12.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422308    GT:AD:DP:GQ:PL    0/1:28,9:37:99:161,0,865
13    52809355    .    C    A    627.29    MQFilter40    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.224;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.62;MQ0=25;MQRankSum=0.228;QD=7.13;ReadPosRankSum=-0.754;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-64P12.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422308    GT:AD:DP:GQ:PL    0/1:52,36:88:99:657,0,1090
13    52855275    rs2181567    T    C    32.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.35;MQ0=0;MQRankSum=-1.026;QD=6.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-64P12.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422308    GT:AD:DP:GQ:PL    0/1:3,2:5:62.74:63,0,68
13    52952928    rs113543720    CA    C    108.52    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=19;FS=3.31;HRun=9;HaplotypeScore=107.2836;IndelType=D;MQ=56.25;MQ0=0;MQRankSum=-0.058;QD=5.71;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258613    GT:AD:DP:GQ:PL    0/1:12,7:19:99:148,0,232
13    52971893    rs3803264    G    A    570.86    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.026;DB;DP=41;Dels=0.0;FS=12.593;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=13.92;ReadPosRankSum=-0.17;SNPEFF_AMINO_ACID_CHANGE=I165;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_52971367_52972329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258613    GT:AD:DP:GQ:PL    0/1:22,19:41:99:601,0,657
13    52989863    rs1056335    C    T    1021.12    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.819;QD=15.47;ReadPosRankSum=-0.663;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462289    GT:AD:DP:GQ:PL    0/1:34,32:66:99:1051,0,1200
13    53007968    rs12430144    A    G    363.40    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.262;QD=12.53;ReadPosRankSum=0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475375    GT:AD:DP:GQ:PL    0/1:17,12:29:99:393,0,607
13    53009048    rs11148252    C    T    1285.19    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.701;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=57.83;MQ0=0;MQRankSum=0.186;QD=13.25;ReadPosRankSum=0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475375    GT:AD:DP:GQ:PL    0/1:52,45:97:99:1315,0,1499
13    53029485    rs3892337    C    G    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.15;ReadPosRankSum=-1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258607    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:67,0,73
13    53030565    rs9536079    G    A    316.10    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.702;QD=16.64;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258607    GT:AD:DP:GQ:PL    0/1:8,11:19:99:346,0,242
13    53035783    rs7337054    T    C    1700.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=59.53;MQ0=0;QD=34.7;SNPEFF_AMINO_ACID_CHANGE=T226;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_53035193_53036061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000490903    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1734,132,0
13    53035925    rs7335867    A    G    2185.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=I274V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_53035193_53036061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000490903    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2219,163,0
13    53036398    rs3803262    A    G    247.95    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=15.5;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468284    GT:AD:DP:GQ:PL    0/1:7,9:16:99:278,0,238
13    53151291    rs117961669    T    G    803.69    MQFilter40    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.677;DB;DP=85;Dels=0.0;FS=7.943;HRun=0;HaplotypeScore=1.7297;MQ=28.98;MQ0=0;MQRankSum=-1.01;QD=9.46;ReadPosRankSum=-1.645;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TPTE2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427445    GT:AD:DP:GQ:PL    0/1:39,46:85:99:834,0,749
13    53153549    rs342767    C    T    1037.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.13;MQ0=3;QD=29.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=TPTE2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427445    GT:AD:DP:GQ:PL    1/1:0,35:35:84.25:1070,84,0
13    53217493    rs78872760    A    G    1546.56    MQFilter40    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=4.03;DB;DP=145;Dels=0.0;FS=4.284;HRun=0;HaplotypeScore=2.311;MQ=39.68;MQ0=18;MQRankSum=0.981;QD=10.67;ReadPosRankSum=0.803;SNPEFF_AMINO_ACID_CHANGE=Y289C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_53216541_53217919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPA1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342657    GT:AD:DP:GQ:PL    0/1:75,70:145:99:1577,0,1772
13    53231454    rs7335091    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310528    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
13    53231523    rs6561675    G    A    194.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310528    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
13    53232489    rs4542538    A    G    1880.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310528    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1914,144,0
13    53238087    rs181586060    A    G    149.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.93;ReadPosRankSum=0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310528    GT:AD:DP:GQ:PL    0/1:5,5:10:99:179,0,175
13    53240884    rs9316580    G    C    771.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=36.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483074    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:805,60,0
13    53253938    rs7987405    T    C    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310528    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
13    53254082    rs4539485    T    C    1288.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310528    GT:AD:DP:GQ:PL    1/1:0,36:37:96.31:1321,96,0
13    53254296    rs7986540    A    G    2038.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310528    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2071,162,0
13    53254497    rs9536235    T    C    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310528    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
13    53262175    rs2408657    G    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SUGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343788    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
13    53277639    rs9536243    G    A    762.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377962    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:795,60,0
13    53277646    rs9536244    T    C    843.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.33;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377962    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:876,66,0
13    53283062    rs7338913    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LECT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431550    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
13    53394421    rs17089897    G    A    134.55    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=65.05;MQ0=0;MQRankSum=0.198;QD=19.22;ReadPosRankSum=1.495;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377951    GT:AD:DP:GQ:PL    0/1:2,5:7:48.28:165,0,48
13    53394436    rs151290353    G    GT    215.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=79.4572;IndelType=I;MQ=61.95;MQ0=0;QD=30.85;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377951    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:258,18,0
13    53395036    rs7334339    A    G    1251.14    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=99;Dels=0.0;FS=9.967;HRun=0;HaplotypeScore=0.8321;MQ=59.49;MQ0=0;MQRankSum=-0.361;QD=12.64;ReadPosRankSum=0.263;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377951    GT:AD:DP:GQ:PL    0/1:52,47:99:99:1281,0,1490
13    53395092    rs7334868    G    A    1284.46    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.167;DB;DP=103;Dels=0.0;FS=0.787;HRun=0;HaplotypeScore=0.734;MQ=59.78;MQ0=0;MQRankSum=0.829;QD=12.47;ReadPosRankSum=-0.051;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377951    GT:AD:DP:GQ:PL    0/1:55,48:103:99:1314,0,1573
13    53602970    rs2298229    A    G    1240.16    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.696;DB;DP=84;Dels=0.0;FS=8.555;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.519;QD=14.76;ReadPosRankSum=1.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OLFM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489054    GT:AD:DP:GQ:PL    0/1:37,46:84:99:1270,0,980
13    53603405    rs67353875    A    G    148.97    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OLFM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219022    GT:AD:DP:GQ:PL    0/1:1,5:6:17.20:179,0,17
13    55015081    rs811605    G    A    873.32    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.121;DB;DP=87;Dels=0.0;FS=16.546;HRun=1;HaplotypeScore=0.0;MQ=45.64;MQ0=4;MQRankSum=2.33;QD=10.04;ReadPosRankSum=-0.149;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL13AP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484130    GT:AD:DP:GQ:PL    0/1:48,38:87:99:903,0,1183
13    55015244    rs2785935    A    G    2143.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=58.28;MQ0=0;QD=32.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL13AP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484130    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2177,172,0
13    55015509    rs115738668    C    T    284.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.194;QD=11.37;ReadPosRankSum=-0.305;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL13AP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484130    GT:AD:DP:GQ:PL    0/1:15,10:25:99:314,0,533
13    57747574    rs473750    C    T    1583.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.96;MQ0=1;QD=33.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR20E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434815    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1616,123,0
13    57747640    rs472915    C    G    837.51    MQFilter40    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.393;DB;DP=179;Dels=0.0;FS=2.737;HRun=1;HaplotypeScore=2.1992;MQ=22.08;MQ0=106;MQRankSum=-0.285;QD=4.68;ReadPosRankSum=-0.797;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR20E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434815    GT:AD:DP:GQ:PL    0/1:128,50:179:99:868,0,670
13    57747674    rs7983667    G    T    500.80    MQFilter40    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.631;DB;DP=250;DS;Dels=0.0;FS=2.177;HRun=0;HaplotypeScore=0.0;MQ=17.12;MQ0=173;MQRankSum=0.331;QD=2.0;ReadPosRankSum=-0.914;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR20E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434815    GT:AD:DP:GQ:PL    0/1:214,36:250:99:531,0,1060
13    57747714    rs9597529    C    T    762.67    MQFilter40    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=0.934;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=15.74;MQ0=179;MQRankSum=-0.201;QD=3.06;ReadPosRankSum=0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR20E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434815    GT:AD:DP:GQ:PL    0/1:211,37:249:99:793,0,1064
13    57747992    rs7983930    C    G    92.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.768;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.98;MQ0=0;MQRankSum=0.354;QD=6.59;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR20E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434815    GT:AD:DP:GQ:PL    0/1:10,4:14:99:122,0,289
13    60240571    rs3803205    A    T    126.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377908    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
13    60348143    rs68106478    CAAT    C    350.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=34.9002;IndelType=D;MQ=43.31;MQ0=0;QD=43.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267214    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:392,24,0
13    60565621    rs339542    T    C    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267214    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
13    60566071    rs72626800    A    G    131.33    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.75;MQ0=0;MQRankSum=-0.295;QD=8.76;ReadPosRankSum=0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267214    GT:AD:DP:GQ:PL    0/1:9,6:15:99:161,0,323
13    60582651    rs339540    C    G    1335.34    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2428;MQ=59.7;MQ0=0;MQRankSum=-0.182;QD=17.57;ReadPosRankSum=-0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267214    GT:AD:DP:GQ:PL    0/1:36,40:76:99:1365,0,1257
13    60590299    rs2762134    C    T    510.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267215    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:544,39,0
13    60617060    rs2800294    A    G    158.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=15.84;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267215    GT:AD:DP:GQ:PL    0/1:4,6:10:99:188,0,122
13    60686017    rs1225834    G    C    68.39    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.77;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267215    GT:AD:DP:GQ:PL    0/1:4,3:7:98.38:98,0,126
13    60707316    rs4886208    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267215    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    60849792    rs141131232    A    G    951.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=TARDBPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448913    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:984,72,0
13    61057778    rs7322888    C    T    67.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.25;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000196169    GT:AD:DP:GQ:PL    0/1:3,3:6:97.50:98,0,108
13    61058724    rs7329723    G    A    264.21    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=29.36;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000196169    GT:AD:DP:GQ:PL    0/1:1,8:9:12.92:294,0,13
13    61102575    rs148917045    GATA    G    2498.95    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=7.963;DB;DP=118;FS=6.086;HRun=0;HaplotypeScore=486.8576;IndelType=D;MQ=58.75;MQ0=0;MQRankSum=-0.295;QD=21.18;ReadPosRankSum=3.145;SNPEFF_AMINO_ACID_CHANGE=DN313D;SNPEFF_CODON_CHANGE=gataat/gat;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_13_61102501_61103351;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000196169    GT:AD:DP:GQ:PL    0/1:56,62:118:99:2538,0,2819
13    61103438    rs9538735    A    G    293.80    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.612;QD=15.46;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484389    GT:AD:DP:GQ:PL    0/1:9,10:19:99:324,0,316
13    61986918    rs3812872    C    A    2680.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_AMINO_ACID_CHANGE=V184;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_61985150_61987919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358674    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2713,214,0
13    61988107    rs4281600    T    G    139.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358674    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:173,15,0
13    61988153    rs3812873    C    G    76.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358674    GT:AD:DP:GQ:PL    0/1:1,3:4:16.61:107,0,17
13    62334287    rs9539295    C    T    681.09    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.504;DB;DP=61;Dels=0.0;FS=3.832;HRun=0;HaplotypeScore=0.9999;MQ=59.62;MQ0=0;MQRankSum=0.405;QD=11.17;ReadPosRankSum=-0.06;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL596329.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390718    GT:AD:DP:GQ:PL    0/1:35,26:61:99:711,0,1227
13    62334543    rs74081624    A    C    209.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.936;QD=14.96;ReadPosRankSum=0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL596329.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390718    GT:AD:DP:GQ:PL    0/1:7,7:14:99:239,0,251
13    63745832    rs298898    G    A    83.05    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.31;MQ0=0;MQRankSum=-1.221;QD=10.38;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,5:8:72.73:113,0,73
13    64321070    rs143346428    G    C    714.23    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.438;DB;DP=51;Dels=0.0;FS=1.149;HRun=0;HaplotypeScore=0.9997;MQ=51.05;MQ0=0;MQRankSum=0.962;QD=14.0;ReadPosRankSum=0.507;SNPEFF_AMINO_ACID_CHANGE=C46S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_64320934_64321323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL445989.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453638    GT:AD:DP:GQ:PL    0/1:25,26:51:99:744,0,684
13    64385632    rs12429435    C    T    578.88    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.879;DB;DP=45;Dels=0.0;FS=1.464;HRun=1;HaplotypeScore=0.0;MQ=45.77;MQ0=2;MQRankSum=0.182;QD=12.86;ReadPosRankSum=0.911;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPP1R2P10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393023    GT:AD:DP:GQ:PL    0/1:23,22:45:99:609,0,563
13    64413054    rs11617716    G    A    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E104P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400311    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
13    64413292    rs111556974    G    C    152.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=20;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.6651;MQ=57.88;MQ0=0;MQRankSum=0.042;QD=7.63;ReadPosRankSum=1.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E104P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400311    GT:AD:DP:GQ:PL    0/1:12,8:20:99:183,0,407
13    64413296    rs2635991    A    G    132.20    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=21;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=1.399;MQ=57.99;MQ0=0;MQRankSum=-0.555;QD=6.3;ReadPosRankSum=1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E104P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400311    GT:AD:DP:GQ:PL    0/1:13,8:21:99:162,0,432
13    64413478    rs35914111    A    G    101.85    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=17;Dels=0.0;FS=2.077;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.791;QD=5.99;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E104P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400311    GT:AD:DP:GQ:PL    0/1:12,5:17:99:132,0,413
13    64413947    rs9564124    A    C    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E104P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400311    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:71,0,30
13    64414231    rs61958597    C    T    95.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=11.98;ReadPosRankSum=2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E104P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400311    GT:AD:DP:GQ:PL    0/1:4,4:8:99:126,0,142
13    64414234    rs61958598    A    G    102.23    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=14.6;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E104P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400311    GT:AD:DP:GQ:PL    0/1:3,4:7:99:132,0,101
13    64417500    rs2807157    C    G    62.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.36;MQ0=0;MQRankSum=-0.55;QD=8.89;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,3:7:92.24:92,0,109
13    64417732    rs61958602    C    T    219.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.069;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=2.454;QD=12.2;ReadPosRankSum=1.491;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,9:18:99:250,0,246
13    64417800    rs4884520    A    C    64.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.98;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:65.60:95,0,66
13    65884191    rs892261    T    C    709.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=STARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397973    GT:AD:DP:GQ:PL    1/1:0,26:26:57.18:743,57,0
13    67800061    .    A    C    1214.14    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DP=81;Dels=0.0;FS=0.86;HRun=1;HaplotypeScore=0.9989;MQ=59.72;MQ0=0;MQRankSum=-0.005;QD=14.99;ReadPosRankSum=-1.009;SNPEFF_AMINO_ACID_CHANGE=C838G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_67799537_67802572;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328454    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1244,0,1159
13    67800935    rs9571740    G    A    876.83    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=68;Dels=0.0;FS=4.876;HRun=0;HaplotypeScore=0.9999;MQ=59.66;MQ0=0;MQRankSum=1.253;QD=12.89;ReadPosRankSum=1.163;SNPEFF_AMINO_ACID_CHANGE=D546;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_67799537_67802572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328454    GT:AD:DP:GQ:PL    0/1:37,31:68:99:907,0,1113
13    67802339    rs8000556    A    T    780.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.531;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.965;MQ=60.0;MQ0=0;MQRankSum=0.31;QD=15.62;ReadPosRankSum=0.66;SNPEFF_AMINO_ACID_CHANGE=V78;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_67799537_67802572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328454    GT:AD:DP:GQ:PL    0/1:25,25:50:99:811,0,893
13    68476397    rs289056    T    C    711.41    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.924;DB;DP=71;Dels=0.0;FS=0.997;HRun=0;HaplotypeScore=2.8054;MQ=58.79;MQ0=0;MQRankSum=-0.382;QD=10.02;ReadPosRankSum=-1.1;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E111P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442229    GT:AD:DP:GQ:PL    0/1:43,28:71:99:741,0,1205
13    68476664    rs7983616    T    C    2399.69    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DB;DP=163;Dels=0.0;FS=1.233;HRun=1;HaplotypeScore=0.0;MQ=58.06;MQ0=0;MQRankSum=-1.068;QD=14.72;ReadPosRankSum=-0.085;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E111P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442229    GT:AD:DP:GQ:PL    0/1:78,85:163:99:2430,0,2445
13    68476807    rs9541247    C    G    2373.48    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=166;Dels=0.0;FS=4.613;HRun=0;HaplotypeScore=3.5638;MQ=55.91;MQ0=0;MQRankSum=-0.735;QD=14.3;ReadPosRankSum=-2.405;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E111P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442229    GT:AD:DP:GQ:PL    0/1:82,84:166:99:2403,0,2443
13    68477024    rs12561359    A    G    629.86    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.175;DB;DP=114;Dels=0.0;FS=5.767;HRun=2;HaplotypeScore=0.0;MQ=46.68;MQ0=6;MQRankSum=-7.695;QD=5.53;ReadPosRankSum=0.569;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E111P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442229    GT:AD:DP:GQ:PL    0/1:69,45:114:99:660,0,2262
13    68477059    rs176417    T    C    438.82    PASS    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.524;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=47.12;MQ0=3;MQRankSum=-7.767;QD=4.43;ReadPosRankSum=-2.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E111P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442229    GT:AD:DP:GQ:PL    0/1:62,37:99:99:469,0,1969
13    68477134    rs7319270    C    T    1085.70    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.258;DB;DP=107;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7351;MQ=48.29;MQ0=4;MQRankSum=-1.947;QD=10.15;ReadPosRankSum=-2.022;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E111P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442229    GT:AD:DP:GQ:PL    0/1:56,50:107:99:1116,0,1788
13    68485324    rs1831482    A    G    1006.53    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=132;Dels=0.0;FS=27.985;HRun=0;HaplotypeScore=4.6155;MQ=48.36;MQ0=3;MQRankSum=-7.051;QD=7.63;ReadPosRankSum=-1.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E33P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437705    GT:AD:DP:GQ:PL    0/1:78,54:132:99:1037,0,2581
13    68485388    rs4089507    C    T    555.69    PASS    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=0.733;DB;DP=139;Dels=0.0;FS=36.867;HRun=1;HaplotypeScore=0.7887;MQ=43.05;MQ0=7;MQRankSum=-8.229;QD=4.0;ReadPosRankSum=-1.925;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR7E33P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437705    GT:AD:DP:GQ:PL    0/1:93,46:139:99:586,0,2944
13    70314433    rs1559465    A    G    39.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.9;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377844    GT:AD:DP:GQ:PL    0/1:2,3:5:69.51:70,0,72
13    70314807    rs7331253    A    T    146.71    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=20.96;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377844    GT:AD:DP:GQ:PL    0/1:1,6:7:18.26:177,0,18
13    70370853    rs17727950    A    G    307.84    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.046;QD=10.62;ReadPosRankSum=-2.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377844    GT:AD:DP:GQ:PL    0/1:16,13:29:99:338,0,538
13    70535355    rs9592668    T    A    624.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=24.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377844    GT:AD:DP:GQ:PL    1/1:0,25:25:63.14:657,63,0
13    70549636    rs71693665    CTTAAAAAAAT    C    481.30    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=149.0172;IndelType=D;MQ=51.97;MQ0=0;MQRankSum=-1.468;QD=34.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377844    GT:AD:DP:GQ:PL    0/1:6,8:14:99:520,0,918
13    70550028    rs9542143    T    A    99.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.43;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377844    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,142
13    70681305    rs9564649    G    A    646.36    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=40;Dels=0.0;FS=5.13;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.414;QD=16.16;ReadPosRankSum=0.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377844    GT:AD:DP:GQ:PL    0/1:17,23:40:99:676,0,490
13    72038512    rs1931485    A    G    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377826    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    72038653    rs915052    C    A    1861.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377826    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1894,138,0
13    72249162    rs71123296    A    AG    483.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=55.2677;IndelType=I;MQ=41.51;MQ0=0;QD=30.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305425    GT:AD:DP:GQ:PL    1/1:2,13:14:36.12:526,36,0
13    72249648    rs78399604    AT    A    253.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=38.536;IndelType=D;MQ=37.34;MQ0=0;QD=15.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305425    GT:AD:DP:GQ:PL    1/1:4,12:16:35.93:295,36,0
13    73284411    rs7931    A    T    695.98    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=51;Dels=0.0;FS=1.128;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.179;QD=13.65;ReadPosRankSum=-0.952;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MZT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377818    GT:AD:DP:GQ:PL    0/1:26,25:51:99:726,0,728
13    73292860    rs9543098    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MZT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377818    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    73301655    rs1465897    A    C    561.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MZT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377818    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:595,45,0
13    73301728    rs1465896    T    C    479.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=S5G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_73301662_73301825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MZT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377818    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:512,42,0
13    73302157    rs35753402    CT    C    144.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=3;HaplotypeScore=16.4154;IndelType=D;MQ=56.04;MQ0=0;QD=24.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377815    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:186,15,0
13    73312359    rs6562726    G    T    72.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377815    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
13    73320455    rs2281847    C    T    130.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464754    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
13    73329086    rs8002668    G    A    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377767    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
13    73329358    rs10887    G    A    290.46    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.957;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=11.17;ReadPosRankSum=-0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377767    GT:AD:DP:GQ:PL    0/1:14,12:26:99:320,0,500
13    73343039    rs2196979    C    T    2206.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=36.18;SNPEFF_AMINO_ACID_CHANGE=T427;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_73342923_73343050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545453    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2240,163,0
13    73343180    .    T    C    35.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377767    GT:AD:DP:GQ:PL    0/1:2,2:4:64.45:65,0,64
13    73346117    rs77807178    G    A    538.19    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=0.943;QD=17.94;ReadPosRankSum=0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377767    GT:AD:DP:GQ:PL    0/1:14,16:30:99:568,0,433
13    73346502    .    T    C    220.44    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=16.96;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377767    GT:AD:DP:GQ:PL    0/1:6,7:13:99:250,0,159
13    73349225    rs7332140    G    A    150.75    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.826;QD=8.38;ReadPosRankSum=0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377767    GT:AD:DP:GQ:PL    0/1:12,6:18:99:181,0,369
13    73349359    rs7332388    G    C    1542.14    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.209;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4891;MQ=59.59;MQ0=0;MQRankSum=1.329;QD=13.77;ReadPosRankSum=-0.309;SNPEFF_AMINO_ACID_CHANGE=T164R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_73349349_73349513;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545453    GT:AD:DP:GQ:PL    0/1:53,59:112:99:1572,0,1656
13    73366704    rs11148921    A    T    232.16    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.807;DB;DP=34;Dels=0.03;FS=0.0;HRun=8;HaplotypeScore=0.9665;MQ=58.0;MQ0=0;MQRankSum=1.453;QD=6.63;ReadPosRankSum=-0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326291    GT:AD:DP:GQ:PL    0/1:21,13:34:99:262,0,670
13    73369642    rs1372000    A    G    1253.78    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.599;DB;DP=81;Dels=0.0;FS=0.847;HRun=0;HaplotypeScore=1.7338;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=15.48;ReadPosRankSum=0.347;SNPEFF_AMINO_ACID_CHANGE=I167V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_73369497_73369695;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIBF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326291    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1284,0,1311
13    73409508    .    T    TA    487.54    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.438;DP=93;FS=1.166;HRun=13;HaplotypeScore=343.5793;IndelType=I;MQ=57.27;MQ0=0;MQRankSum=0.611;QD=5.24;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492803    GT:AD:DP:GQ:PL    0/1:62,27:93:99:527,0,601
13    73409634    rs2038847    T    C    321.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492803    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:354,30,0
13    73491108    rs9592872    T    C    58.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=5.86;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326291    GT:AD:DP:GQ:PL    0/1:6,4:10:88.60:89,0,215
13    73539286    rs17284007    A    G    225.92    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=11.89;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326291    GT:AD:DP:GQ:PL    0/1:10,9:19:99:256,0,352
13    73636910    rs113148226    A    AGT    1450.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=61;FS=0.0;HRun=0;HaplotypeScore=261.2102;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=1.249;QD=23.78;ReadPosRankSum=0.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476859    GT:AD:DP:GQ:PL    1/1:24,22:61:90.97:1492,91,0
13    73637012    .    TA    T    56.70    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DP=12;FS=0.0;HRun=14;HaplotypeScore=79.4702;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=1.001;QD=4.73;ReadPosRankSum=2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476859    GT:AD:DP:GQ:PL    0/1:6,6:12:55.52:96,0,56
13    73650112    rs9573097    C    A    258.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.929;MQ=52.84;MQ0=0;QD=19.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464404    GT:AD:DP:GQ:PL    1/1:0,13:13:24.07:291,24,0
13    73650117    rs9573098    G    A    258.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.929;MQ=52.2;MQ0=0;QD=21.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KLF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464404    GT:AD:DP:GQ:PL    1/1:0,12:12:24.07:291,24,0
13    74269426    rs2281984    G    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
13    74289799    rs6562780    A    T    287.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342812    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
13    74387138    rs1426    C    T    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342812    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
13    74534245    rs7321264    G    C    132.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342812    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
13    74534247    rs7320779    A    C    138.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342812    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:171,12,0
13    74989267    rs79348499    G    C    106.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.55;QD=15.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL355390.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325811    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,106
13    75814018    rs513306    C    T    7931.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=237;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1964;MQ=59.25;MQ0=0;QD=33.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTAGE11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451540    GT:AD:DP:GQ:PL    1/1:0,236:237:99:7932,593,0
13    75814070    rs61960513    C    G    2836.42    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.745;DB;DP=250;DS;Dels=0.0;FS=2.185;HRun=0;HaplotypeScore=0.9967;MQ=58.81;MQ0=0;MQRankSum=-0.7;QD=11.35;ReadPosRankSum=-0.324;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTAGE11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451540    GT:AD:DP:GQ:PL    0/1:140,110:250:99:2866,0,4455
13    75814344    rs61960514    C    A    1007.13    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=101;Dels=0.0;FS=2.765;HRun=1;HaplotypeScore=2.8441;MQ=58.92;MQ0=0;MQRankSum=1.615;QD=9.97;ReadPosRankSum=-0.674;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTAGE11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451540    GT:AD:DP:GQ:PL    0/1:60,41:101:99:1037,0,1939
13    75814504    rs1888258    A    G    147.07    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.68;MQ0=0;MQRankSum=1.123;QD=7.0;ReadPosRankSum=-0.688;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTAGE11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451540    GT:AD:DP:GQ:PL    0/1:13,8:21:99:177,0,373
13    75860804    rs534538    C    A    126.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
13    75863315    rs7332292    G    C    128.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.125;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.35;QD=6.44;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    0/1:12,8:20:99:159,0,403
13    75868841    rs4885284    C    T    37.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478591    GT:AD:DP:GQ:PL    0/1:3,2:5:67.83:68,0,111
13    75873787    rs2297207    G    A    189.95    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.895;QD=19.0;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    0/1:3,7:10:87.79:220,0,88
13    75876389    rs2297208    G    A    929.04    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=69;Dels=0.0;FS=4.975;HRun=1;HaplotypeScore=1.7337;MQ=59.46;MQ0=0;MQRankSum=-0.24;QD=13.46;ReadPosRankSum=0.215;SNPEFF_AMINO_ACID_CHANGE=L131;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_75876379_75876537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425511    GT:AD:DP:GQ:PL    0/1:37,32:69:99:959,0,969
13    75880384    rs33992075    CAA    C    122.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=12;HaplotypeScore=22.8686;IndelType=D;MQ=60.0;MQ0=0;QD=20.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413735    GT:AD:DP:GQ:PL    1/1:0,5:6:17.78:164,18,0
13    75880667    rs2297209    G    A    503.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413735    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:536,39,0
13    75884216    rs1062087    C    T    1990.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.33;SNPEFF_AMINO_ACID_CHANGE=V268I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_75884171_75884287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413735    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2024,153,0
13    75887127    rs2274757    T    C    48.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=8.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,6:6:9:81,9,0
13    75894015    rs2274758    T    C    122.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
13    75898163    rs7330796    T    C    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
13    75898596    rs2297210    C    A    325.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:358,27,0
13    75901749    rs2297206    G    T    742.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:776,60,0
13    75910909    rs693134    C    A    172.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
13    75910950    rs9573525    T    G    414.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=27.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:447,36,0
13    75915250    rs35018625    T    TA    1846.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=3;HaplotypeScore=330.3926;IndelType=I;MQ=56.05;MQ0=0;QD=42.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1889,126,0
13    75915859    rs9888477    C    A    128.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
13    75923536    rs11413649    T    TA    271.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=5;HaplotypeScore=15.9125;IndelType=I;MQ=62.65;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
13    75935986    rs3825441    C    G    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
13    75936519    rs7983969    C    G    838.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=57.01;MQ0=0;QD=27.94;SNPEFF_AMINO_ACID_CHANGE=G241;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_75936162_75936743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    1/1:0,30:30:78.17:871,78,0
13    75936636    rs17254379    G    A    1504.17    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.653;DB;DP=128;Dels=0.0;FS=1.447;HRun=2;HaplotypeScore=2.3001;MQ=59.46;MQ0=0;MQRankSum=1.882;QD=11.75;ReadPosRankSum=0.136;SNPEFF_AMINO_ACID_CHANGE=F202;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_75936162_75936743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    0/1:68,60:128:99:1534,0,1832
13    76055397    rs9573565    C    T    422.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.214;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.133;QD=17.59;ReadPosRankSum=1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    0/1:8,16:24:99:452,0,221
13    76055602    rs77685055    G    A    429.58    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.575;DB;DP=42;Dels=0.0;FS=1.559;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.164;QD=10.23;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=A101V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_76055406_76056250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377625    GT:AD:DP:GQ:PL    0/1:24,17:42:99:460,0,695
13    76101863    rs1408042    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464050    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:72,0,69
13    76101979    rs77512031    G    A    307.26    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=18;Dels=0.0;FS=6.107;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.721;QD=17.07;ReadPosRankSum=-1.268;SNPEFF_AMINO_ACID_CHANGE=L72;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_76101949_76101987;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355801    GT:AD:DP:GQ:PL    0/1:7,11:18:99:337,0,213
13    76111657    rs41286112    G    A    614.96    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.72;MQ0=0;MQRankSum=0.522;QD=17.08;ReadPosRankSum=-0.993;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355801    GT:AD:DP:GQ:PL    0/1:15,21:36:99:645,0,441
13    76111694    .    G    C    41.37    QDFilter2    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.902;DP=30;Dels=0.0;FS=34.757;HRun=1;HaplotypeScore=4.9696;MQ=53.52;MQ0=0;MQRankSum=-3.464;QD=1.38;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355801    GT:AD:DP:GQ:PL    0/1:23,7:30:71.37:71,0,816
13    76112102    rs7335949    C    T    492.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377615    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:525,39,0
13    76123901    rs67763278    CGGCGGCGGCGGCGAA    C    762.89    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=16;FS=3.31;HRun=0;HaplotypeScore=209.8328;IndelType=D;MQ=52.23;MQ0=0;MQRankSum=-1.555;QD=47.68;ReadPosRankSum=-0.872;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UCHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471792    GT:AD:DP:GQ:PL    0/1:8,8:16:99:802,0,1487
13    76124151    rs8192738    C    T    762.96    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.542;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-1.638;QD=12.93;ReadPosRankSum=1.974;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UCHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377589    GT:AD:DP:GQ:PL    0/1:30,29:59:99:793,0,972
13    76135028    rs4884008    T    A    342.23    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=19;Dels=0.0;FS=9.425;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=18.01;ReadPosRankSum=0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UCHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377589    GT:AD:DP:GQ:PL    0/1:7,12:19:99:372,0,200
13    76140814    rs66613969    CT    C    418.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;DB;DP=22;FS=0.0;HRun=11;HaplotypeScore=72.1901;IndelType=D;MQ=59.44;MQ0=0;MQRankSum=-1.073;QD=19.01;ReadPosRankSum=-1.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UCHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377589    GT:AD:DP:GQ:PL    1/1:1,21:22:30.96:460,31,0
13    76143572    rs2296146    T    C    823.66    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.981;DB;DP=48;Dels=0.0;FS=10.403;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.427;QD=17.16;ReadPosRankSum=0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UCHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377589    GT:AD:DP:GQ:PL    0/1:18,30:48:99:854,0,547
13    76169234    rs7330411    G    A    2018.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.58;MQ0=0;QD=36.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UCHL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471792    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2052,153,0
13    76210742    rs2224797    A    C    208.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341547    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:241,21,0
13    76369702    rs17065053    A    C    223.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=13.95;ReadPosRankSum=2.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321797    GT:AD:DP:GQ:PL    0/1:8,8:16:99:253,0,266
13    76369746    rs668008    C    T    153.25    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=21.89;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321797    GT:AD:DP:GQ:PL    0/1:2,5:7:63.34:183,0,63
13    76378459    rs625033    T    C    2443.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=37.59;SNPEFF_AMINO_ACID_CHANGE=F193;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_76378425_76378677;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526202    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2476,187,0
13    76382100    rs2241913    C    T    2466.87    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.091;DB;DP=161;Dels=0.0;FS=1.274;HRun=2;HaplotypeScore=0.8941;MQ=59.71;MQ0=0;MQRankSum=-1.292;QD=15.32;ReadPosRankSum=0.234;SNPEFF_AMINO_ACID_CHANGE=L328F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_76381616_76382335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321797    GT:AD:DP:GQ:PL    0/1:78,83:161:99:2497,0,2248
13    76406981    rs9544051    C    T    59.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.91;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321797    GT:AD:DP:GQ:PL    0/1:3,3:6:89.43:89,0,105
13    76409436    rs2273997    A    G    524.84    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.507;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=11.17;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=L1150;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_76409369_76409475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357063    GT:AD:DP:GQ:PL    0/1:28,19:47:99:555,0,771
13    76415379    rs3736858    C    G    230.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.178;QD=10.95;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485987    GT:AD:DP:GQ:PL    0/1:12,9:21:99:260,0,412
13    76417101    rs920701    C    T    975.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485987    GT:AD:DP:GQ:PL    1/1:0,28:28:78.23:1008,78,0
13    76419421    rs3832886    AT    A    516.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=3;HaplotypeScore=50.8149;IndelType=D;MQ=57.16;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533809    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:558,45,0
13    76423248    rs7986131    T    C    1461.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=36.54;SNPEFF_AMINO_ACID_CHANGE=M1039T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_76423215_76423428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526202    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1494,114,0
13    76429311    rs9573671    G    A    209.09    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.056;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=11.0;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321797    GT:AD:DP:GQ:PL    0/1:12,7:19:99:239,0,396
13    76429619    rs4885354    C    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321797    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:79,6,0
13    76445155    rs9544057    G    C    4175.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359392.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318245    GT:AD:DP:GQ:PL    1/1:0,115:115:99:4176,334,0
13    76445189    rs9600566    A    G    1257.69    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-2.057;QD=13.52;ReadPosRankSum=-0.714;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_76445187_76445379;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359392.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318245    GT:AD:DP:GQ:PL    0/1:51,42:93:99:1288,0,1785
13    76445316    rs9600567    C    T    1276.30    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=2.778;DB;DP=90;Dels=0.0;FS=4.661;HRun=2;HaplotypeScore=0.9734;MQ=59.49;MQ0=0;MQRankSum=1.58;QD=14.18;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=S18;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_76445187_76445379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359392.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318245    GT:AD:DP:GQ:PL    0/1:41,49:90:99:1306,0,1186
13    76457148    rs7987971    A    G    618.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359392.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318245    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:651,48,0
13    76457183    rs9530477    T    C    781.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL359392.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318245    GT:AD:DP:GQ:PL    1/1:0,26:26:63.20:814,63,0
13    77522725    rs67524409    GACTT    G    4160.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.0;HRun=0;HaplotypeScore=412.4395;IndelType=D;MQ=55.67;MQ0=1;QD=51.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377462    GT:AD:DP:GQ:PL    1/1:4,77:80:99:4161,229,0
13    77527707    rs9530614    A    G    1866.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377462    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1899,141,0
13    77566320    rs138037471    C    G    71.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=14.22;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=A29;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_77566219_77566406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541907    GT:AD:DP:GQ:PL    0/1:2,3:5:21.40:101,0,21
13    77569901    rs605153    G    A    176    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377453    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
13    77589284    rs619520    T    C    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470210    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
13    77589725    rs599115    A    C    653.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355619    GT:AD:DP:GQ:PL    1/1:0,29:29:60.17:687,60,0
13    77624972    rs7991760    C    T    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    77635527    rs2285389    G    A    356.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:389,30,0
13    77643151    rs700359    A    G    78.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
13    77644862    .    G    A    142.32    HaplotypeScoreFilter13;QDFilter2    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.44;DP=70;Dels=0.03;FS=23.362;HRun=14;HaplotypeScore=18.4378;MQ=56.04;MQ0=0;MQRankSum=-1.809;QD=1.98;ReadPosRankSum=0.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    0/1:43,27:70:99:172,0,748
13    77651738    rs2153506    T    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    77661528    rs7992704    C    T    123.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
13    77671331    rs927852    T    C    134.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360084    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
13    77692800    rs9544421    C    T    458.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466564    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:491,36,0
13    77715202    rs17692643    T    G    134.52    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=8.97;ReadPosRankSum=-2.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486679    GT:AD:DP:GQ:PL    0/1:8,7:15:99:165,0,284
13    77725106    rs9574006    C    A    897.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,31:31:72.21:930,72,0
13    77732333    rs3861128    G    A    81.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
13    77736319    rs2296855    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
13    77739291    rs9318468    A    T    470.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:503,36,0
13    77745911    rs7990717    A    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
13    77750901    rs4885444    T    C    79.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
13    77751892    rs4885445    C    T    813.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_AMINO_ACID_CHANGE=L1739;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_77751883_77752089;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    1/1:0,26:26:60.20:847,60,0
13    77768146    .    C    T    251.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=17.95;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    0/1:6,8:14:99:281,0,167
13    77780665    rs17693337    T    C    68.21    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.221;QD=8.53;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    0/1:5,3:8:98.21:98,0,146
13    77818100    rs35429706    C    CA    184.09    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=0.037;DB;DP=28;FS=0.0;HRun=16;HaplotypeScore=202.1522;IndelType=I;MQ=50.88;MQ0=0;MQRankSum=-0.858;QD=6.57;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    0/1:22,6:28:42.82:223,0,43
13    77835520    rs11436373    T    TA    274.43    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=22;FS=0.0;HRun=11;HaplotypeScore=85.3272;IndelType=I;MQ=56.78;MQ0=0;MQRankSum=0.456;QD=12.47;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357337    GT:AD:DP:GQ:PL    0/1:8,14:22:4.09:313,0,4
13    78146301    rs678047    C    T    1190.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_AMINO_ACID_CHANGE=S151;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_78146259_78146324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348770    GT:AD:DP:GQ:PL    1/1:0,38:38:93.29:1224,93,0
13    78163474    rs17774740    A    C    332.14    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=23.72;ReadPosRankSum=-1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348770    GT:AD:DP:GQ:PL    0/1:4,10:14:99:362,0,124
13    78177082    rs7490669    T    A    273.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348770    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:306,24,0
13    78178451    rs6563011    C    T    1924.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348770    GT:AD:DP:GQ:PL    1/1:0,56:57:99:1957,147,0
13    78183087    rs9593240    A    C    158.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348770    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
13    78183167    rs912293    G    C    812.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348770    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:846,60,0
13    78187846    rs4595685    A    G    180.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471491    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:213,18,0
13    78188254    rs2181614    G    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471491    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    78191824    rs4142585    G    T    1565.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469982    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1598,129,0
13    78192207    rs9574090    T    C    1996.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469982    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2030,165,0
13    78211386    rs67385926    CAT    C    144.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=47.3103;IndelType=D;MQ=60.0;MQ0=0;QD=18.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348770    GT:AD:DP:GQ:PL    1/1:3,5:8:15.52:186,16,0
13    78216873    rs1053985    A    G    1315.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=L618;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_78216841_78216943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCEL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535157    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1349,99,0
13    78235317    rs2105439    T    C    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SPTLC1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450718    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
13    78235487    rs4885480    A    G    2302.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.69;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0232;MQ=51.28;MQ0=0;MQRankSum=-0.803;QD=28.08;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SPTLC1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450718    GT:AD:DP:GQ:PL    1/1:1,81:82:99:2335,175,0
13    78235493    rs4885481    A    G    3077.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.4446;MQ=48.8;MQ0=0;QD=32.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SPTLC1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450718    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3111,259,0
13    78235993    rs4052459    A    G    331.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.15;MQ0=21;QD=6.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SPTLC1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450718    GT:AD:DP:GQ:PL    1/1:0,55:55:44.81:365,45,0
13    78236177    rs12385880    T    C    736.33    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.179;DB;DP=145;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.6221;MQ=12.34;MQ0=87;MQRankSum=1.673;QD=5.04;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SPTLC1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450718    GT:AD:DP:GQ:PL    1/1:23,122:145:83.83:769,84,0
13    78236316    rs71436667    G    A    4037.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=29.55;MQ0=40;QD=23.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SPTLC1P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450718    GT:AD:DP:GQ:PL    1/1:1,171:172:99:4037,358,0
13    78317054    .    CT    C    91.57    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DP=27;FS=0.0;HRun=15;HaplotypeScore=183.511;IndelType=D;MQ=55.58;MQ0=0;MQRankSum=-0.289;QD=3.39;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267219    GT:AD:DP:GQ:PL    0/1:17,10:27:99:131,0,141
13    78317069    .    TA    T    35.52    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=1.561;DP=33;FS=2.722;HRun=1;HaplotypeScore=199.9679;IndelType=D;MQ=56.41;MQ0=0;MQRankSum=-0.809;QD=1.08;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267219    GT:AD:DP:GQ:PL    0/1:27,6:33:74.55:75,0,367
13    78318389    rs17777179    G    A    374.09    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.364;DB;DP=27;Dels=0.0;FS=2.251;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.383;QD=13.86;ReadPosRankSum=0.898;SNPEFF_AMINO_ACID_CHANGE=W9*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_13_78318327_78318567;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLAIN1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000377236    GT:AD:DP:GQ:PL    0/1:13,14:27:99:404,0,408
13    78475313    rs5351    T    C    579.52    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.787;DB;DP=41;Dels=0.0;FS=1.571;HRun=0;HaplotypeScore=1.5782;MQ=60.0;MQ0=0;MQRankSum=-0.3;QD=14.13;ReadPosRankSum=-0.483;SNPEFF_AMINO_ACID_CHANGE=L277;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_78475193_78475342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDNRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334286    GT:AD:DP:GQ:PL    0/1:20,21:41:99:610,0,658
13    78477674    rs5348    A    G    2438.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=59.7;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=S184;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_78477630_78477742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDNRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334286    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2472,193,0
13    78477897    rs3027108    T    C    78.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDNRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334286    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
13    78492856    rs12716722    T    C    31.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.33;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDNRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377211    GT:AD:DP:GQ:PL    0/1:4,2:6:61.97:62,0,140
13    79766188    rs2988039    A    G    308.73    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.805;QD=11.03;ReadPosRankSum=0.61;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,13:28:99:339,0,467
13    79894736    rs3187338    C    T    673.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449987    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:707,54,0
13    79894877    rs34668220    CA    C    292.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=14;HaplotypeScore=97.8327;IndelType=D;MQ=59.93;MQ0=0;QD=16.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:1,16:18:49.64:334,50,0
13    79915389    rs7981067    G    T    1018.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.2;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,29:29:84.26:1052,84,0
13    79916633    rs3742117    G    A    232.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:265,21,0
13    79916792    rs79278660    T    TA    5243.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;FS=0.0;HRun=3;HaplotypeScore=271.5505;IndelType=I;MQ=60.9;MQ0=0;QD=40.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:3,126:129:99:5243,376,0
13    79916973    rs3742118    A    T    2005.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2038,153,0
13    79916994    rs3742119    A    G    1561.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1594,120,0
13    79927157    rs68032355    CA    C    246.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=29.4072;IndelType=D;MQ=57.05;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:288,24,0
13    79929326    rs9530901    G    A    1167.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,36:36:87.29:1201,87,0
13    79929638    rs4328330    T    C    201.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
13    79932178    rs9601216    G    C    75.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.72;MQ0=0;QD=25.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
13    79932246    rs9574412    C    G    154.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=30.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
13    79932617    rs7994560    A    G    731.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:765,57,0
13    79940150    rs3831152    CTG    C    1845.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=179.7919;IndelType=D;MQ=58.78;MQ0=1;QD=41.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1887,132,0
13    79940811    rs7327603    T    C    1451.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.88;SNPEFF_AMINO_ACID_CHANGE=V364;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_79940768_79941007;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1485,114,0
13    79943166    rs10710579    TA    T    681.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=12;HaplotypeScore=116.1345;IndelType=D;MQ=59.07;MQ0=0;QD=17.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:6,31:38:94.67:724,95,0
13    79946071    .    TA    T    81.38    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.611;DP=21;FS=0.0;HRun=16;HaplotypeScore=188.2499;IndelType=D;MQ=56.55;MQ0=0;MQRankSum=0.322;QD=3.88;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472143    GT:AD:DP:GQ:PL    0/1:10,10:21:16.81:120,0,17
13    79946104    rs9545093    A    G    497.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.62;MQ0=0;QD=27.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472143    GT:AD:DP:GQ:PL    1/1:0,18:18:39.13:530,39,0
13    79946163    rs7325232    G    C    221.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.56;MQ0=0;QD=31.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472143    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:255,21,0
13    79951356    rs7998224    C    T    135.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
13    79952795    rs1749982    G    C    199.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:232,18,0
13    79979679    rs2763810    T    C    174.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267229    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
13    80113652    rs1408049    G    C    177.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218652    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
13    80910786    rs4728    C    A    74.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.59;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=V352L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_80910307_80910912;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRY2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541655    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:104,0,30
13    80910792    rs700397    T    G    66.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.55;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=R350;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_80910307_80910912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541655    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:96,0,29
13    82264343    rs7326041    A    G    1102.60    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.108;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7853;MQ=57.87;MQ0=0;MQRankSum=0.76;QD=12.39;ReadPosRankSum=0.811;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PTMAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393073    GT:AD:DP:GQ:PL    0/1:46,43:89:99:1133,0,1533
13    82264468    rs9574945    G    A    399.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.229;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=55.71;MQ0=0;MQRankSum=0.217;QD=8.87;ReadPosRankSum=-1.976;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PTMAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393073    GT:AD:DP:GQ:PL    0/1:27,18:45:99:429,0,835
13    82265231    rs7996225    G    A    75.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PTMAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393073    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:105,0,31
13    86369120    rs3825413    C    T    2650.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=L508;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_86366925_86370667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLITRK6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400286    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2684,205,0
13    86370827    rs356280    T    C    68.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.995;MQ=51.01;MQ0=0;MQRankSum=1.231;QD=13.76;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLITRK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400286    GT:AD:DP:GQ:PL    0/1:2,3:5:24.09:99,0,24
13    87045827    rs9513670    T    C    453.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:486,36,0
13    88840236    rs9558589    A    G    876.04    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.69;DB;DP=63;Dels=0.0;FS=2.182;HRun=2;HaplotypeScore=1.8824;MQ=60.0;MQ0=0;MQRankSum=-1.253;QD=13.91;ReadPosRankSum=0.648;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-545P6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430214    GT:AD:DP:GQ:PL    0/1:32,31:63:99:906,0,907
13    90014942    rs9560297    T    C    1117.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=SP3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414049    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1150,84,0
13    90883383    rs12857240    C    G    828.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=KRT18P27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427733    GT:AD:DP:GQ:PL    1/1:0,27:27:72.18:862,72,0
13    92408505    rs3783054    T    G    411.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.375;QD=13.7;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377067    GT:AD:DP:GQ:PL    0/1:15,15:30:99:441,0,499
13    92560425    rs1854735    G    T    145.97    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=20.85;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377067    GT:AD:DP:GQ:PL    0/1:2,5:7:60.81:176,0,61
13    92796964    rs12429836    G    A    52.13    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.774;QD=4.01;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377067    GT:AD:DP:GQ:PL    0/1:9,4:13:82.13:82,0,324
13    93142312    rs2149060    T    A    290.67    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.419;DB;DP=56;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=1.7883;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=5.19;ReadPosRankSum=0.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377067    GT:AD:DP:GQ:PL    0/1:36,20:56:99:321,0,1130
13    93142362    rs722178    C    T    514.69    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=57;Dels=0.0;FS=1.046;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.145;QD=9.03;ReadPosRankSum=-0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377067    GT:AD:DP:GQ:PL    0/1:37,20:57:99:545,0,998
13    94938785    rs1409174    A    G    330.01    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.646;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.585;QD=14.35;ReadPosRankSum=0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377047    GT:AD:DP:GQ:PL    0/1:11,12:23:99:360,0,361
13    94938808    rs148500936    GAT    G    220.33    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=16;FS=6.99;HRun=0;HaplotypeScore=77.6998;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=0.984;QD=13.77;ReadPosRankSum=-2.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377047    GT:AD:DP:GQ:PL    0/1:9,7:16:99:259,0,405
13    95096013    rs1407995    T    C    114.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377028    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
13    95096409    rs7317214    C    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377028    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    95096505    rs7339198    G    A    923.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377028    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:957,72,0
13    95097956    rs755684    C    T    694.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377028    GT:AD:DP:GQ:PL    1/1:0,21:21:57.16:728,57,0
13    95117676    rs61964069    C    T    317.90    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.127;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.09;MQ0=0;MQRankSum=-2.005;QD=8.15;ReadPosRankSum=0.629;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472871    GT:AD:DP:GQ:PL    0/1:25,14:39:99:348,0,700
13    95117697    .    G    GAT    1238.49    PASS    AC=2;AF=1.00;AN=2;DP=40;FS=0.0;HRun=0;HaplotypeScore=228.8541;IndelType=I;MQ=60.09;MQ0=0;QD=30.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472871    GT:AD:DP:GQ:PL    1/1:25,15:40:99:1281,115,0
13    95117701    rs57468086    T    TA    1174.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.087;DB;DP=41;FS=0.0;HRun=1;HaplotypeScore=212.6581;IndelType=I;MQ=60.09;MQ0=0;MQRankSum=1.126;QD=28.66;ReadPosRankSum=1.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472871    GT:AD:DP:GQ:PL    1/1:17,24:41:86.79:1217,87,0
13    95118735    rs12864325    T    C    51.31    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.0;QD=4.28;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377028    GT:AD:DP:GQ:PL    0/1:9,3:12:81.31:81,0,337
13    95118741    rs12877849    C    T    71.79    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.386;QD=5.52;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377028    GT:AD:DP:GQ:PL    0/1:9,4:13:99:102,0,340
13    95119007    rs41275878    A    G    167.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.036;QD=14.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377028    GT:AD:DP:GQ:PL    0/1:6,6:12:97.67:198,0,98
13    95121488    rs4773794    G    A    114.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.08;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377028    GT:AD:DP:GQ:PL    0/1:2,4:6:65.46:144,0,65
13    95131563    rs9584235    T    C    164.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=13.69;ReadPosRankSum=0.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472871    GT:AD:DP:GQ:PL    0/1:6,6:12:99:194,0,198
13    95227138    .    AAAG    A    301.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DP=18;FS=0.0;HRun=0;HaplotypeScore=110.4656;IndelType=D;MQ=54.17;MQ0=0;MQRankSum=-0.818;QD=16.74;ReadPosRankSum=-1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470480    GT:AD:DP:GQ:PL    0/1:9,9:18:99:340,0,367
13    95230877    rs16949940    G    A    395.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.264;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.161;QD=14.14;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470480    GT:AD:DP:GQ:PL    0/1:14,14:28:99:426,0,502
13    95231981    rs2275648    T    C    30.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261296    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:62,6,0
13    95243270    rs9301979    G    A    377.21    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.985;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=16.4;ReadPosRankSum=0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261296    GT:AD:DP:GQ:PL    0/1:11,12:23:99:407,0,380
13    95264604    rs9524559    C    T    1340.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=34.37;SNPEFF_AMINO_ACID_CHANGE=A155;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_95264444_95264644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR180;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376958    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1373,102,0
13    95275576    rs4296139    C    G    508.36    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.358;DB;DP=37;Dels=0.0;FS=1.594;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.747;QD=13.74;ReadPosRankSum=-2.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376958    GT:AD:DP:GQ:PL    0/1:18,19:37:99:538,0,561
13    95275706    rs4238308    A    G    74.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.59;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376958    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,136
13    95279505    rs9524568    T    A    282.54    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.922;QD=17.66;ReadPosRankSum=-1.03;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376958    GT:AD:DP:GQ:PL    0/1:6,10:16:99:313,0,152
13    95364337    rs2253604    T    G    775.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.91;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_95361886_95364389;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376945    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:808,60,0
13    95673939    rs9524765    A    G    557.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:590,45,0
13    95696470    rs12875235    T    G    90.11    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=13;Dels=0.0;FS=18.543;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=6.93;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:9,4:13:99:120,0,335
13    95714942    rs11568656    G    T    1407.28    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=4.765;DB;DP=124;Dels=0.0;FS=1.502;HRun=0;HaplotypeScore=1.5774;MQ=59.63;MQ0=0;MQRankSum=-0.478;QD=11.35;ReadPosRankSum=-0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:74,50:124:99:1437,0,2051
13    95726541    rs1189466    A    G    572.83    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.469;DB;DP=38;Dels=0.0;FS=1.384;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=15.07;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=F901;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_95726468_95726578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412704    GT:AD:DP:GQ:PL    0/1:15,23:38:99:603,0,364
13    95727780    rs1678339    T    C    1340.47    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.644;DB;DP=80;Dels=0.0;FS=6.011;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-0.564;QD=16.76;ReadPosRankSum=-0.437;SNPEFF_AMINO_ACID_CHANGE=L857;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_95727686_95727805;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412704    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1370,0,1171
13    95727861    rs11568672    G    A    592.54    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.137;DB;DP=44;Dels=0.0;FS=1.686;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.966;QD=13.47;ReadPosRankSum=-1.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:25,19:44:99:623,0,690
13    95735604    rs1189437    G    T    440.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.014;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.8387;MQ=57.85;MQ0=0;MQRankSum=1.073;QD=18.34;ReadPosRankSum=-0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:9,15:24:99:470,0,294
13    95735729    rs12864844    C    T    131.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
13    95829870    rs1751005    T    C    413.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:446,33,0
13    95838784    rs2148529    G    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
13    95858686    rs3818493    G    A    173.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=17.34;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:4,6:10:99:203,0,122
13    95858704    rs3818494    G    C    177.90    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=12.71;ReadPosRankSum=1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:8,6:14:99:208,0,281
13    95858978    rs2274405    T    C    3043    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.145;DB;DP=203;Dels=0.0;FS=0.535;HRun=0;HaplotypeScore=0.9159;MQ=59.55;MQ0=0;MQRankSum=-0.735;QD=14.99;ReadPosRankSum=-0.375;SNPEFF_AMINO_ACID_CHANGE=S248;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_95858786_95859035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536256    GT:AD:DP:GQ:PL    0/1:91,112:203:99:3073,0,2775
13    95858996    rs2274406    T    C    2878.75    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=221;Dels=0.0;FS=1.045;HRun=3;HaplotypeScore=5.281;MQ=59.58;MQ0=0;MQRankSum=1.267;QD=13.03;ReadPosRankSum=-1.765;SNPEFF_AMINO_ACID_CHANGE=R242;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_95858786_95859035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536256    GT:AD:DP:GQ:PL    0/1:100,121:221:99:2909,0,2965
13    95859160    rs3818495    A    T    720.26    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.681;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.577;QD=18.95;ReadPosRankSum=0.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:16,22:38:99:750,0,535
13    95859974    rs2274408    T    C    37.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.32;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:4,2:6:67.94:68,0,112
13    95860288    rs2274410    C    A    200.68    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.475;QD=9.56;ReadPosRankSum=0.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:13,8:21:99:231,0,397
13    95861530    rs2389204    A    G    31.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.38;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:3,2:5:61.89:62,0,69
13    95861804    rs899494    A    G    1291.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=I148;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_95861688_95861851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536256    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1324,99,0
13    95861981    rs1678403    C    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
13    95861997    rs2389203    G    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    95862860    rs3046400    AGAGT    A    413.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=65.8713;IndelType=D;MQ=50.65;MQ0=0;QD=51.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:456,24,0
13    95862896    rs899496    A    G    386.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=52.84;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:420,39,0
13    95886854    rs11568637    T    C    199.80    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=18;Dels=0.0;FS=7.57;HRun=0;HaplotypeScore=2.4971;MQ=60.0;MQ0=0;MQRankSum=-1.78;QD=11.1;ReadPosRankSum=0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376887    GT:AD:DP:GQ:PL    0/1:9,8:18:99:230,0,329
13    96086010    rs3751334    A    G    174.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=15.86;ReadPosRankSum=1.408;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_96085858_96086301;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376873    GT:AD:DP:GQ:PL    0/1:5,6:11:99:204,0,175
13    96205359    rs1886855    A    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299339    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
13    96230279    rs1325774    T    G    997.90    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.312;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.306;QD=14.05;ReadPosRankSum=0.859;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347108    GT:AD:DP:GQ:PL    0/1:33,37:71:99:1028,0,908
13    96234753    rs7324781    C    T    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299339    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    96239805    rs11070136    G    A    830.94    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.509;DB;DP=57;Dels=0.0;FS=9.746;HRun=1;HaplotypeScore=0.8321;MQ=59.19;MQ0=0;MQRankSum=0.261;QD=14.58;ReadPosRankSum=0.48;SNPEFF_AMINO_ACID_CHANGE=P717S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_96239793_96239983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361156    GT:AD:DP:GQ:PL    0/1:27,30:57:99:861,0,677
13    96241835    rs6492815    G    T    75.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.6;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347108    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,104
13    96258410    rs7319952    A    G    222.57    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=12.37;ReadPosRankSum=-0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347108    GT:AD:DP:GQ:PL    0/1:10,8:18:99:253,0,359
13    96263456    rs35588279    A    T    112.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.79;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347108    GT:AD:DP:GQ:PL    0/1:2,4:6:60.52:143,0,61
13    96270202    rs17268561    A    T    1314.73    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.89;DB;DP=118;Dels=0.0;FS=3.507;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.525;QD=11.14;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347108    GT:AD:DP:GQ:PL    0/1:69,49:118:99:1345,0,1823
13    96271882    rs7334692    G    A    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347108    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
13    96285729    rs3742150    A    G    154.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466027    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
13    96293523    rs61975171    A    C    1305    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.76;MQ0=0;MQRankSum=-0.088;QD=16.73;ReadPosRankSum=-0.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DZIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347108    GT:AD:DP:GQ:PL    0/1:31,47:78:99:1335,0,927
13    96484748    rs3101573    C    T    120.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:153,15,0
13    96484751    rs3125432    G    A    120.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:153,15,0
13    96485417    rs3099359    A    G    34.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
13    96505527    rs11840966    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462472    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
13    96505952    rs3099360    T    C    679.44    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.786;DB;DP=48;Dels=0.0;FS=6.725;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.791;QD=14.15;ReadPosRankSum=0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462472    GT:AD:DP:GQ:PL    0/1:20,28:48:99:709,0,615
13    96506664    rs11070154    A    G    920.03    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=61;Dels=0.0;FS=2.837;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.648;QD=15.08;ReadPosRankSum=0.545;SNPEFF_AMINO_ACID_CHANGE=T1358;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_96506569_96506729;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376747    GT:AD:DP:GQ:PL    0/1:27,34:61:99:950,0,916
13    96513187    rs34859372    T    C    285.83    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.286;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.102;QD=15.04;ReadPosRankSum=1.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476866    GT:AD:DP:GQ:PL    0/1:9,10:19:99:316,0,317
13    96529725    rs4773930    A    G    245.64    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=22.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:3,8:11:89.89:276,0,90
13    96539977    rs11842395    T    G    33.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=8.39;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:2,2:4:63.55:64,0,71
13    96539979    rs11842396    T    C    40.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=10.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:70,0,72
13    96540141    rs9525075    T    C    1252.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1286,99,0
13    96540143    rs9525076    T    C    1248.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=28.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1282,99,0
13    96540204    rs12876018    T    G    861.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.146;DB;DP=58;Dels=0.0;FS=5.324;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.389;QD=14.85;ReadPosRankSum=-0.762;SNPEFF_AMINO_ACID_CHANGE=M994L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_96540146_96540225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376747    GT:AD:DP:GQ:PL    0/1:29,29:58:99:891,0,867
13    96554927    rs7334320    C    T    169.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
13    96578189    rs7985727    G    A    132.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486643    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
13    96579462    rs9525086    T    C    936.23    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=66;Dels=0.0;FS=0.936;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.809;QD=14.19;ReadPosRankSum=-0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:31,35:66:99:966,0,954
13    96589076    rs9525093    G    A    105.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.13;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,142
13    96592506    rs7333370    T    C    69.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.63;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,104
13    96599271    rs7986005    C    T    862.05    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=59;Dels=0.0;FS=2.599;HRun=0;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=14.61;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:29,30:59:99:892,0,976
13    96599433    rs9556512    A    C    884.67    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.761;DB;DP=77;Dels=0.0;FS=0.886;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.969;QD=11.49;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:42,35:77:99:915,0,1279
13    96599445    rs9556513    C    T    962.22    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.577;DB;DP=72;Dels=0.0;FS=0.957;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.187;QD=13.36;ReadPosRankSum=-1.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:39,33:72:99:992,0,1196
13    96599565    rs9561995    T    C    116.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.281;QD=8.96;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:7,6:13:99:146,0,251
13    96622673    rs816139    T    C    175.46    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.847;QD=10.97;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376722    GT:AD:DP:GQ:PL    0/1:9,7:16:99:205,0,315
13    96636170    rs9562008    G    C    323.67    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=19.04;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397618    GT:AD:DP:GQ:PL    0/1:6,11:17:99:354,0,169
13    96638636    rs816142    A    C    1120.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.01;SNPEFF_AMINO_ACID_CHANGE=S328A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_96638587_96638686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376747    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1153,84,0
13    96641695    rs555120    T    G    434.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376712    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:467,36,0
13    96676124    rs473930    G    A    352.67    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.794;QD=14.11;ReadPosRankSum=1.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UGGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376712    GT:AD:DP:GQ:PL    0/1:14,11:25:99:383,0,501
13    97639414    rs9284174    C    T    1824.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=33.18;SNPEFF_AMINO_ACID_CHANGE=L200;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_97637973_97640087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXGR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298440    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1858,138,0
13    98017211    rs3825422    A    G    189.85    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=17.26;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343600    GT:AD:DP:GQ:PL    0/1:4,7:11:99:220,0,132
13    98019036    rs7333641    C    T    68.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.63;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376679    GT:AD:DP:GQ:PL    0/1:6,3:9:98.66:99,0,226
13    98087096    rs3803251    T    C    622.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245304    GT:AD:DP:GQ:PL    1/1:0,22:22:60.10:655,60,0
13    98622187    rs57918250    A    C    164.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=23.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482642    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:198,18,0
13    98634572    rs11620106    T    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261574    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
13    98637917    rs67901179    CT    C    133.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=123.618;IndelType=D;MQ=55.52;MQ0=0;QD=8.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421861    GT:AD:DP:GQ:PL    1/1:6,10:16:26.18:175,26,0
13    98645580    rs56411106    G    A    293.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403772    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
13    98650024    rs651241    G    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261574    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
13    98652834    .    G    T    118.59    FSFilter60    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.12;DP=54;Dels=0.0;FS=85.42;HRun=2;HaplotypeScore=0.7887;MQ=51.77;MQ0=0;MQRankSum=-2.672;QD=2.2;ReadPosRankSum=-0.901;SNPEFF_AMINO_ACID_CHANGE=C223F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_98652793_98652899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539640    GT:AD:DP:GQ:PL    0/1:29,25:54:99:149,0,1002
13    98658358    rs633161    G    A    1756.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.27;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261574    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1790,144,0
13    98666549    rs6491395    T    C    180.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=22.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261574    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:214,18,0
13    98670641    rs528546    G    C    424.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261574    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:457,33,0
13    98828260    rs774690    T    A    248.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319562    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
13    98829176    rs628778    T    C    677.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=27.08;SNPEFF_AMINO_ACID_CHANGE=P105;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_98828536_98829519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF113B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267291    GT:AD:DP:GQ:PL    1/1:0,24:25:57.17:710,57,0
13    98829618    rs626950    A    G    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319562    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
13    99061556    rs5806061    C    CT    688.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=9;HaplotypeScore=66.2943;IndelType=I;MQ=59.48;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319562    GT:AD:DP:GQ:PL    1/1:1,21:22:66.18:730,66,0
13    99088006    rs1792    G    A    1015.28    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.117;DB;DP=69;Dels=0.0;FS=6.515;HRun=1;HaplotypeScore=0.0;MQ=59.12;MQ0=0;MQRankSum=0.552;QD=14.71;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319562    GT:AD:DP:GQ:PL    0/1:35,34:69:99:1045,0,1007
13    99088113    rs1998535    C    T    1120.56    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=83;Dels=0.0;FS=2.962;HRun=1;HaplotypeScore=0.8941;MQ=59.72;MQ0=0;MQRankSum=-0.681;QD=13.5;ReadPosRankSum=0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319562    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1151,0,1380
13    99092052    rs4772080    G    T    515.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319562    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:548,45,0
13    99093094    rs2146998    T    C    281.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319562    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:315,27,0
13    99098318    rs2274053    C    T    907.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376554    GT:AD:DP:GQ:PL    1/1:0,28:28:69.23:940,69,0
13    99098470    rs2274054    C    T    1249.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376554    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1283,96,0
13    99098882    rs2281766    A    C    1054.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376554    GT:AD:DP:GQ:PL    1/1:0,31:31:87.23:1088,87,0
13    99099338    rs2281767    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376554    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
13    99100547    rs12261    T    C    1384.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=S1038;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_99100490_99102023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319562    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1417,105,0
13    99109319    rs2031237    C    T    78.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.79;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543110    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:109,0,68
13    99112468    rs112280830    T    TGCCTGAC    495.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=32.6999;IndelType=I;MQ=48.03;MQ0=0;QD=82.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543110    GT:AD:DP:GQ:PL    1/1:0,4:6:18.06:538,18,0
13    99112680    rs4771305    C    T    1301.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.17;SNPEFF_AMINO_ACID_CHANGE=P337;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_99112626_99112694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539966    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1334,99,0
13    99112754    rs4772083    T    G    484.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543110    GT:AD:DP:GQ:PL    1/1:0,19:19:54.05:517,54,0
13    99112755    rs62827661    T    C    484.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543110    GT:AD:DP:GQ:PL    1/1:0,19:19:54.05:517,54,0
13    99115838    rs66470175    TA    T    53.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=15;HaplotypeScore=55.2671;IndelType=D;MQ=53.82;MQ0=0;QD=8.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376533    GT:AD:DP:GQ:PL    1/1:0,6:6:14.72:95,15,0
13    99115927    rs2296149    A    G    669.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.04;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.68;MQ0=0;QD=24.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376533    GT:AD:DP:GQ:PL    1/1:0,26:26:57.17:702,57,0
13    99127252    rs9513430    C    G    365.07    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=30;Dels=0.0;FS=17.723;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.561;QD=12.17;ReadPosRankSum=-0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376533    GT:AD:DP:GQ:PL    0/1:16,14:30:99:395,0,417
13    99127496    rs2274055    C    T    643.92    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=28;Dels=0.0;FS=5.077;HRun=1;HaplotypeScore=1.5253;MQ=59.17;MQ0=0;MQRankSum=0.737;QD=23.0;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376533    GT:AD:DP:GQ:PL    0/1:8,20:28:99:674,0,236
13    99134626    rs9513431    A    T    75.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DB;DP=15;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.8667;MQ=58.45;MQ0=0;MQRankSum=0.412;QD=5.0;ReadPosRankSum=1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376533    GT:AD:DP:GQ:PL    0/1:9,6:15:99:105,0,325
13    99340037    rs950905    C    T    421.60    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.781;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.869;QD=17.57;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376503    GT:AD:DP:GQ:PL    0/1:11,13:24:99:452,0,256
13    99340085    rs950906    G    A    31.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.55;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376503    GT:AD:DP:GQ:PL    0/1:5,2:7:61.81:62,0,190
13    99354931    rs1768042    C    T    109.36    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=21.87;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376503    GT:AD:DP:GQ:PL    0/1:1,4:5:20.21:139,0,20
13    99356612    rs1339067    A    G    747.27    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.034;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.852;QD=14.95;ReadPosRankSum=-0.021;SNPEFF_AMINO_ACID_CHANGE=A449;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_99356543_99356689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376503    GT:AD:DP:GQ:PL    0/1:21,29:50:99:777,0,700
13    99361959    rs2297319    G    A    652.72    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=4.039;DB;DP=42;Dels=0.0;FS=5.407;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.458;QD=15.54;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376503    GT:AD:DP:GQ:PL    0/1:19,23:42:99:683,0,482
13    99364295    rs1289393    T    C    134.12    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=11.18;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376503    GT:AD:DP:GQ:PL    0/1:7,5:12:99:164,0,233
13    99374306    rs4646219    C    T    36.73    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=5.25;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313260    GT:AD:DP:GQ:PL    0/1:3,4:7:66.72:67,0,91
13    99376181    rs2297322    C    T    316.50    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.655;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.356;QD=12.66;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=S117N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_99376166_99376285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376503    GT:AD:DP:GQ:PL    0/1:14,11:25:99:346,0,504
13    99376482    rs4350452    G    C    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC15A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313260    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
13    99447005    rs812808    T    C    3103.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.67;SNPEFF_AMINO_ACID_CHANGE=R2046;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_99445741_99447005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400235    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3137,244,0
13    99448441    rs9554522    T    A    888.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:921,69,0
13    99448623    rs9554524    A    G    88.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
13    99449579    rs1289314    T    C    2866.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    1/1:0,93:93:99:2900,226,0
13    99449755    rs1289315    G    A    784.44    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.105;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.786;MQ=58.89;MQ0=0;MQRankSum=0.656;QD=18.68;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:15,27:42:99:814,0,442
13    99449898    rs1289316    T    C    247.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
13    99457072    rs2296982    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340449    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
13    99457161    rs2296983    G    C    154.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340449    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:187,15,0
13    99457431    rs2296984    T    G    241.88    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=32;Dels=0.0;FS=6.023;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.516;QD=7.56;ReadPosRankSum=-0.476;SNPEFF_AMINO_ACID_CHANGE=A1841;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_99457253_99457463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400235    GT:AD:DP:GQ:PL    0/1:21,11:32:99:272,0,668
13    99457552    rs7990741    T    A    275.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340449    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:308,24,0
13    99459891    rs9557078    A    C    1925.27    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.728;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.38;MQ0=0;MQRankSum=0.826;QD=13.01;ReadPosRankSum=1.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340449    GT:AD:DP:GQ:PL    0/1:81,67:148:99:1955,0,2455
13    99461532    rs67107122    GTTTTT    G    503.63    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=3.695;DB;DP=26;FS=0.0;HRun=10;HaplotypeScore=142.0522;IndelType=D;MQ=50.39;MQ0=0;MQRankSum=-2.655;QD=19.37;ReadPosRankSum=-0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340449    GT:AD:DP:GQ:PL    0/1:15,11:26:99:543,0,1136
13    99462593    rs2282134    C    T    1466.60    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=5.088;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7549;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=12.75;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:63,52:115:99:1497,0,1942
13    99479376    rs9300515    T    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449796    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
13    99482030    rs9517459    G    C    1179.78    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.736;DB;DP=80;Dels=0.0;FS=2.066;HRun=0;HaplotypeScore=5.8204;MQ=59.13;MQ0=0;MQRankSum=-1.387;QD=14.75;ReadPosRankSum=-0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449796    GT:AD:DP:GQ:PL    0/1:35,45:80:99:1210,0,1092
13    99483856    rs2296986    C    T    957.84    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=77;Dels=0.0;FS=2.155;HRun=0;HaplotypeScore=0.9665;MQ=59.46;MQ0=0;MQRankSum=0.454;QD=12.44;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:42,35:77:99:988,0,1279
13    99484109    rs17709432    G    C    1162.63    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=0.389;DB;DP=101;Dels=0.0;FS=5.298;HRun=1;HaplotypeScore=0.9469;MQ=59.82;MQ0=0;MQRankSum=0.506;QD=11.51;ReadPosRankSum=1.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:59,42:101:99:1193,0,1905
13    99497760    rs2183093    G    T    544.79    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.537;QD=25.94;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472874    GT:AD:DP:GQ:PL    0/1:5,16:21:99:575,0,135
13    99505632    rs9513497    C    T    1508.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.688;DB;DP=106;Dels=0.0;FS=1.042;HRun=0;HaplotypeScore=1.6316;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=14.1;ReadPosRankSum=-0.804;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:53,53:106:99:1539,0,1728
13    99532622    rs6491460    G    A    77.06    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.84;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:1,5:6:25.76:107,0,26
13    99534048    rs6491461    G    A    1315.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1349,99,0
13    99536031    rs9517474    G    A    758.30    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=1.049;QD=12.43;ReadPosRankSum=-0.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    0/1:36,25:61:99:788,0,1083
13    99536215    rs2296996    C    T    366.61    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.07;MQ0=0;MQRankSum=-0.245;QD=14.66;ReadPosRankSum=-0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    0/1:13,12:25:99:397,0,423
13    99536220    rs2296997    A    G    289.19    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.232;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.03;MQ0=0;MQRankSum=0.232;QD=12.05;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    0/1:13,11:24:99:319,0,466
13    99536275    rs7320272    G    A    288.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
13    99537202    rs2274641    C    A    816.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=56;Dels=0.0;FS=2.504;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.564;QD=14.58;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    0/1:28,28:56:99:846,0,877
13    99537217    rs2274642    G    T    935.77    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.034;DB;DP=63;Dels=0.0;FS=5.68;HRun=0;HaplotypeScore=0.7887;MQ=59.27;MQ0=0;MQRankSum=-0.227;QD=14.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    0/1:32,31:63:99:966,0,964
13    99537431    rs2026024    G    A    506.20    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=35;Dels=0.0;FS=4.715;HRun=1;HaplotypeScore=0.7887;MQ=58.67;MQ0=0;MQRankSum=1.007;QD=14.46;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    0/1:18,17:35:99:536,0,569
13    99538711    rs60011886    C    G    1258.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=37.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1292,96,0
13    99538935    rs6491466    C    G    961.71    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9248;MQ=59.52;MQ0=0;MQRankSum=-0.011;QD=20.04;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473165    GT:AD:DP:GQ:PL    0/1:17,31:48:99:992,0,517
13    99540395    rs1928104    A    G    431.66    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.56;DB;DP=32;Dels=0.0;FS=1.967;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.973;QD=13.49;ReadPosRankSum=0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:15,17:32:99:462,0,407
13    99540500    rs2274643    A    G    1161.03    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.167;DB;DP=60;Dels=0.0;FS=1.043;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.03;QD=19.35;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:23,37:60:99:1191,0,711
13    99556863    rs17783411    T    G    499.63    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.564;QD=13.5;ReadPosRankSum=-0.777;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:17,20:37:99:530,0,534
13    99566435    rs1886551    G    A    131.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=13.16;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:5,5:10:99:162,0,151
13    99578265    rs7318788    T    C    408.47    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.436;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.561;QD=13.18;ReadPosRankSum=-0.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:17,14:31:99:438,0,552
13    99578304    rs9557092    T    C    135.61    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.976;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.439;QD=7.98;ReadPosRankSum=-2.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:10,7:17:99:166,0,361
13    99582656    rs6491468    G    A    59.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.92;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:3,3:6:89.52:90,0,104
13    99607550    rs9517510    G    A    40.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=8.08;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479769    GT:AD:DP:GQ:PL    0/1:3,2:5:58.38:70,0,58
13    99607581    rs9513518    T    A    107.05    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DB;DP=15;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.752;QD=7.14;ReadPosRankSum=0.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479769    GT:AD:DP:GQ:PL    0/1:8,7:15:99:137,0,272
13    99607911    rs8002389    A    G    305.43    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.666;QD=16.97;ReadPosRankSum=-1.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:8,10:18:99:335,0,283
13    99629961    rs34071102    C    CTTGA    1085.83    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.037;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=144.7211;IndelType=I;MQ=57.7;MQ0=0;MQRankSum=-0.814;QD=30.16;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:25,11:36:99:1125,0,943
13    99630263    rs9513522    G    A    245.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.991;QD=17.52;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:6,8:14:99:275,0,158
13    99667619    rs9517546    A    G    1028.34    PASS    AB=0.34;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.676;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.56;MQ0=0;MQRankSum=-2.489;QD=19.4;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:18,35:53:99:1058,0,609
13    99667961    rs7330438    G    A    835.28    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=58.55;MQ0=0;MQRankSum=0.522;QD=17.4;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:23,25:48:99:865,0,706
13    99667982    rs4772168    T    C    502.03    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.456;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-0.143;QD=12.24;ReadPosRankSum=-0.848;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339416    GT:AD:DP:GQ:PL    0/1:21,20:41:99:532,0,647
13    99947261    rs2230341    C    T    775.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.013;DB;DP=42;Dels=0.0;FS=1.906;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.734;QD=18.47;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355700    GT:AD:DP:GQ:PL    0/1:14,28:42:99:806,0,473
13    99948097    rs2230343    A    G    765.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.375;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=58.1;MQ0=0;MQRankSum=0.082;QD=14.72;ReadPosRankSum=0.375;SNPEFF_AMINO_ACID_CHANGE=D101;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_99946784_99948417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR183;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376414    GT:AD:DP:GQ:PL    0/1:26,26:52:99:795,0,855
13    99948178    rs2230342    C    A    550.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.5;DB;DP=42;Dels=0.0;FS=4.646;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=1.552;QD=13.1;ReadPosRankSum=0.43;SNPEFF_AMINO_ACID_CHANGE=V74;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_99946784_99948417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR183;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376414    GT:AD:DP:GQ:PL    0/1:21,21:42:99:580,0,624
13    99966291    rs9517681    A    G    628.05    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.51;DB;DP=56;Dels=0.0;FS=1.594;HRun=0;HaplotypeScore=0.9665;MQ=57.99;MQ0=0;MQRankSum=0.107;QD=11.22;ReadPosRankSum=-1.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355700    GT:AD:DP:GQ:PL    0/1:30,26:56:99:658,0,947
13    99970429    rs66993388    CT    C    285.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=39.6438;IndelType=D;MQ=60.63;MQ0=0;QD=19.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473091    GT:AD:DP:GQ:PL    1/1:3,12:15:36.02:327,36,0
13    100008313    rs7993715    C    G    1064.21    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.551;DB;DP=64;Dels=0.0;FS=2.289;HRun=1;HaplotypeScore=1.9799;MQ=59.64;MQ0=0;MQRankSum=1.041;QD=16.63;ReadPosRankSum=1.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355700    GT:AD:DP:GQ:PL    0/1:30,34:64:99:1094,0,937
13    100020212    rs7318947    G    A    565.48    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.969;DB;DP=41;Dels=0.0;FS=1.435;HRun=2;HaplotypeScore=2.5577;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=13.79;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355700    GT:AD:DP:GQ:PL    0/1:21,20:41:99:595,0,647
13    100424929    rs9517878    C    T    210.14    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=23.35;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLYBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339105    GT:AD:DP:GQ:PL    0/1:2,7:9:54.15:240,0,54
13    100511247    rs35680839    G    A    566.31    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=38;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.623;QD=14.9;ReadPosRankSum=0.833;SNPEFF_AMINO_ACID_CHANGE=V128I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_100511115_100511303;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLYBL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339105    GT:AD:DP:GQ:PL    0/1:18,20:38:99:596,0,544
13    100515193    rs4771346    C    T    235.78    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=10.25;ReadPosRankSum=0.484;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLYBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339105    GT:AD:DP:GQ:PL    0/1:15,8:23:99:266,0,517
13    100523386    rs3742254    T    C    903.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLYBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339105    GT:AD:DP:GQ:PL    1/1:0,28:28:78.22:937,78,0
13    100537221    rs912283    T    C    1346.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLYBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339105    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1379,108,0
13    100537232    rs912284    T    C    1638.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_AMINO_ACID_CHANGE=V16A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_100537231_100537359;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLYBL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425186    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1671,120,0
13    100537376    rs912285    G    A    898.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLYBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339105    GT:AD:DP:GQ:PL    1/1:0,26:27:78.20:931,78,0
13    100622667    rs71114653    T    TGGC    102.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=66.2867;IndelType=I;MQ=52.56;MQ0=0;QD=10.21;SNPEFF_AMINO_ACID_CHANGE=P421RP;SNPEFF_CODON_CHANGE=cca/cGCCca;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_13_100622381_100624163;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267294    GT:AD:DP:GQ:PL    1/1:4,6:10:9.49:143,9,0
13    100635606    rs1334586    G    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376335    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
13    100909783    .    A    G    114.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.29;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376277    GT:AD:DP:GQ:PL    0/1:3,4:7:99:144,0,105
13    100921056    rs4306370    A    G    1149.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376277    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1183,87,0
13    100945533    rs9300598    G    A    2412.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376277    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2445,183,0
13    100945603    rs8002928    A    G    1044.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=59.2;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376277    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:1077,81,0
13    101020695    rs9518061    A    G    1192.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=35;Dels=0.0;FS=7.659;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.436;QD=34.06;ReadPosRankSum=1.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376254    GT:AD:DP:GQ:PL    1/1:1,34:35:53:1225,53,0
13    101167993    rs837286    C    T    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376254    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
13    101192069    rs35498477    C    CT    122.91    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=0.056;DB;DP=43;FS=0.0;HRun=18;HaplotypeScore=297.7207;IndelType=I;MQ=40.98;MQ0=2;MQRankSum=2.975;QD=2.16;ReadPosRankSum=0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A2LD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376250    GT:AD:DP:GQ:PL    0/1:29,15:43:99:162,0,140
13    101286822    rs1890860    A    G    336.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496511    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:369,33,0
13    101286837    rs2297942    A    G    209.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=14.99;ReadPosRankSum=0.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496511    GT:AD:DP:GQ:PL    0/1:7,7:14:99:240,0,236
13    101286924    rs1890861    T    C    1737.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=7.608;MQ=59.49;MQ0=0;QD=38.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496511    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1771,132,0
13    101286974    rs17475563    G    A    1718.74    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=5.244;DB;DP=101;Dels=0.0;FS=0.925;HRun=0;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;MQRankSum=1.164;QD=17.02;ReadPosRankSum=-1.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496511    GT:AD:DP:GQ:PL    0/1:43,58:101:99:1749,0,1128
13    101287340    rs946837    C    T    511.69    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.178;DB;DP=42;Dels=0.0;FS=1.193;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;MQRankSum=0.564;QD=12.18;ReadPosRankSum=-0.512;SNPEFF_AMINO_ACID_CHANGE=V308I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_101287278_101287449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:25,17:42:99:542,0,630
13    101287365    rs946838    T    C    968.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=58.69;MQ0=0;QD=30.25;SNPEFF_AMINO_ACID_CHANGE=A299;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_101287278_101287449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    1/1:0,32:32:81.23:1001,81,0
13    101288992    rs3803256    C    T    814.48    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.261;DB;DP=44;Dels=0.0;FS=4.197;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.584;QD=18.51;ReadPosRankSum=1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:18,26:44:99:844,0,470
13    101289595    rs9300613    C    T    37.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.38;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:2,2:4:67.52:68,0,69
13    101289998    rs7985718    C    A    506.83    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.343;DB;DP=33;Dels=0.0;FS=4.43;HRun=1;HaplotypeScore=1.9628;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=15.36;ReadPosRankSum=-0.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:13,20:33:99:537,0,441
13    101294267    rs9518121    A    G    69.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.95;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:2,3:5:68.83:100,0,69
13    101294428    rs9585476    C    G    886.25    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=64;Dels=0.0;FS=3.164;HRun=0;HaplotypeScore=0.8667;MQ=59.64;MQ0=0;MQRankSum=0.145;QD=13.85;ReadPosRankSum=-0.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:29,35:64:99:916,0,950
13    101308453    rs946841    C    T    45.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.13;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:75,0,33
13    101315175    rs1283210    G    A    822.39    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.697;DB;DP=53;Dels=0.0;FS=4.38;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.009;QD=15.52;ReadPosRankSum=0.258;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440120    GT:AD:DP:GQ:PL    0/1:25,28:53:99:852,0,656
13    101316313    rs1298168    C    T    32.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=8.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423847    GT:AD:DP:GQ:PL    0/1:1,3:4:33.21:62,0,33
13    101321067    rs2791680    T    C    168.69    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=14;Dels=0.0;FS=3.282;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=12.05;ReadPosRankSum=-2.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:5,9:14:99:199,0,169
13    101322622    rs1283201    G    C    292.18    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.768;QD=19.48;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMTC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328767    GT:AD:DP:GQ:PL    0/1:4,11:15:99:322,0,117
13    101720088    rs76173802    G    A    96.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=13.83;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:3,4:7:99:127,0,99
13    101720300    rs1289556    T    G    3031.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=I1472;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_101720270_101720385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3064,226,0
13    101720487    rs17581500    T    A    739.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,20:20:60.15:773,60,0
13    101721029    rs11616341    T    C    589.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=28.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,21:21:48.15:623,48,0
13    101726145    rs651737    C    T    207.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
13    101727043    rs34229756    C    CAG    1296.26    PASS    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=258.2879;IndelType=I;MQ=56.39;MQ0=0;MQRankSum=-0.394;QD=24.0;ReadPosRankSum=-1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:43,11:53:99:1335,0,196
13    101727071    rs112963196    CAG    C    803.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=293.9867;IndelType=D;MQ=56.24;MQ0=0;QD=18.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:35,7:42:74.89:845,75,0
13    101736075    rs686141    A    G    910.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.39;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=L1190;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_101736062_101736155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:944,75,0
13    101742479    rs35491955    A    G    691.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:725,54,0
13    101747878    rs609246    C    T    671.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:704,51,0
13    101747892    rs8000023    A    G    884.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:918,75,0
13    101753023    rs113145864    C    CTG    384.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=40.1687;IndelType=I;MQ=54.75;MQ0=0;QD=54.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:426,21,0
13    101753025    rs67795359    GT    G    180.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=3;HaplotypeScore=48.0271;IndelType=D;MQ=51.77;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:222,18,0
13    101755285    rs650273    G    C    176.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
13    101755480    rs9300647    G    T    2744.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2777,214,0
13    101776954    rs41281140    G    A    694.12    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=55;Dels=0.0;FS=1.124;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.374;QD=12.62;ReadPosRankSum=0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:31,24:55:99:724,0,851
13    101833290    rs1889240    C    T    174.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.742;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.273;QD=8.75;ReadPosRankSum=-1.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:12,8:20:99:205,0,442
13    101833386    rs9582462    A    C    1139.46    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=15.4;ReadPosRankSum=0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1169,0,1095
13    101833450    rs896560    C    T    1610.02    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=4.778;DB;DP=129;Dels=0.0;FS=2.293;HRun=1;HaplotypeScore=3.9729;MQ=60.0;MQ0=0;MQRankSum=1.946;QD=12.48;ReadPosRankSum=-0.764;SNPEFF_AMINO_ACID_CHANGE=R668Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_101832749_101833688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376196    GT:AD:DP:GQ:PL    0/1:69,59:129:99:1640,0,1968
13    101881777    rs3916906    G    A    5797.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8654;MQ=59.55;MQ0=0;QD=37.41;SNPEFF_AMINO_ACID_CHANGE=V531;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_101881744_101881935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,155:155:99:5798,427,0
13    101882016    rs10599518    ATTATT    A    1949.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=237.5407;IndelType=D;MQ=52.47;MQ0=0;QD=47.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:10,31:41:96.33:1991,96,0
13    101882181    rs7326909    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
13    101910617    rs7995032    G    A    202.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
13    101944752    rs570252    C    T    351.32    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=25;Dels=0.0;FS=4.222;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=14.05;ReadPosRankSum=-0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:13,12:25:99:381,0,475
13    102028898    rs6491605    C    T    87.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-0.851;QD=8.76;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:5,5:10:99:118,0,168
13    102030762    rs59237663    C    T    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:66,0,33
13    102030837    rs59301533    G    A    185.17    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.91;MQ0=0;MQRankSum=-1.215;QD=12.34;ReadPosRankSum=1.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NALCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251127    GT:AD:DP:GQ:PL    0/1:8,7:15:99:215,0,292
13    102106276    rs2297700    G    C    37.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.5;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S47;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_102106234_102106451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGBL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376180    GT:AD:DP:GQ:PL    0/1:2,2:4:51.06:68,0,51
13    102227495    rs9557704    A    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376162    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    102235764    .    TA    T    67.79    QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=1.311;DP=46;FS=0.0;HRun=15;HaplotypeScore=233.5592;IndelType=D;MQ=56.92;MQ0=0;MQRankSum=0.461;QD=1.47;ReadPosRankSum=-1.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376162    GT:AD:DP:GQ:PL    0/1:34,9:46:99:107,0,431
13    102344867    rs981073    A    G    1170.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376162    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1204,99,0
13    102366825    rs2281991    A    G    1245.91    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.174;DB;DP=99;Dels=0.0;FS=1.63;HRun=1;HaplotypeScore=0.9789;MQ=59.53;MQ0=0;MQRankSum=-0.286;QD=12.58;ReadPosRankSum=0.192;SNPEFF_AMINO_ACID_CHANGE=E298;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_102366788_102366901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGBL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539955    GT:AD:DP:GQ:PL    0/1:54,45:99:99:1276,0,1518
13    102368056    rs1436266    G    T    1259.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545560    GT:AD:DP:GQ:PL    1/1:0,33:33:96.32:1292,96,0
13    102375150    rs149661933    C    T    364.19    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=29;Dels=0.0;FS=1.77;HRun=0;HaplotypeScore=1.933;MQ=58.39;MQ0=0;MQRankSum=-0.218;QD=12.56;ReadPosRankSum=2.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376143    GT:AD:DP:GQ:PL    0/1:15,14:29:99:394,0,456
13    103271206    rs4576935    G    A    1093.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.173;DB;DP=64;Dels=0.0;FS=3.675;HRun=0;HaplotypeScore=1.7356;MQ=59.28;MQ0=0;MQRankSum=0.09;QD=17.08;ReadPosRankSum=0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:28,35:64:99:1123,0,812
13    103275386    rs2230854    T    C    1211.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.095;DB;DP=112;Dels=0.0;FS=3.78;HRun=0;HaplotypeScore=0.9967;MQ=59.59;MQ0=0;MQRankSum=1.232;QD=10.81;ReadPosRankSum=-0.538;SNPEFF_AMINO_ACID_CHANGE=S260;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_103275227_103275390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:64,48:112:99:1241,0,1948
13    103275495    rs17507043    C    T    204.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.705;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.949;QD=8.51;ReadPosRankSum=0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:16,8:24:99:234,0,490
13    103281625    rs674197    C    T    72.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.1;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496126    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,101
13    103281635    rs687303    G    A    73.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.51;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496126    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,122
13    103289338    rs2274463    C    T    168.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;MQRankSum=-0.839;QD=12.01;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:8,6:14:99:198,0,297
13    103290535    rs613926    G    C    575.82    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=3.306;DB;DP=30;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.19;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:8,22:30:99:606,0,202
13    103290574    rs614290    G    A    806.17    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=3.525;DB;DP=44;Dels=0.0;FS=5.567;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.988;QD=18.32;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:16,28:44:99:836,0,435
13    103292810    rs634293    G    A    97.93    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:5,4:9:99:128,0,185
13    103295551    rs66530927    CTTCT    C    362.86    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.595;DB;DP=27;FS=2.207;HRun=0;HaplotypeScore=133.8583;IndelType=D;MQ=57.81;MQ0=0;MQRankSum=0.142;QD=13.44;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:18,9:27:99:402,0,1122
13    103297435    rs11342465    CT    C    34.01    QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=19;FS=0.0;HRun=12;HaplotypeScore=81.5083;IndelType=D;MQ=59.36;MQ0=0;MQRankSum=0.53;QD=1.79;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:12,6:19:73.04:73,0,229
13    103301130    rs685874    T    G    129.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
13    103301537    rs664660    G    T    3203.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=59.62;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3237,238,0
13    103301619    rs11412680    G    GT    572.58    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.964;DB;DP=37;FS=3.702;HRun=1;HaplotypeScore=136.2214;IndelType=I;MQ=59.67;MQ0=0;MQRankSum=-0.143;QD=15.48;ReadPosRankSum=1.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:20,17:37:99:612,0,671
13    103302024    rs677251    G    C    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
13    103307218    rs673424    C    T    57.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.684;QD=7.24;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:5,3:8:87.90:88,0,180
13    103307322    rs677248    A    G    268.97    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.09;DB;DP=26;Dels=0.0;FS=1.545;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.038;QD=10.34;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:15,11:26:99:299,0,431
13    103307360    rs677179    G    A    322.78    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=24;Dels=0.0;FS=3.741;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=13.45;ReadPosRankSum=0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:13,11:24:99:353,0,360
13    103307483    rs672129    G    A    97.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=13.98;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:3,4:7:94.79:128,0,95
13    103315876    rs9585958    G    A    115.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.27;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:2,4:6:65.82:146,0,66
13    103315948    rs9585959    G    C    131.36    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.558;QD=7.73;ReadPosRankSum=-1.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:11,6:17:99:161,0,409
13    103316113    rs7334625    G    A    172.82    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=24;Dels=0.0;FS=3.851;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.06;QD=7.2;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:15,9:24:99:203,0,496
13    103326489    rs41281656    C    G    96.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376052    GT:AD:DP:GQ:PL    0/1:2,4:6:64.41:127,0,64
13    103328619    rs584710    C    A    117.50    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.713;DB;DP=20;Dels=0.0;FS=2.315;HRun=3;HaplotypeScore=0.0;MQ=60.54;MQ0=0;MQRankSum=-0.238;QD=5.88;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482393    GT:AD:DP:GQ:PL    0/1:13,7:20:99:147,0,452
13    103330718    rs3806    G    A    473.58    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.604;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.58;QD=21.53;ReadPosRankSum=-1.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466153    GT:AD:DP:GQ:PL    0/1:8,14:22:99:504,0,259
13    103338230    rs1587    A    C    113.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.18;ReadPosRankSum=-1.3;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267273    GT:AD:DP:GQ:PL    0/1:3,4:7:99:143,0,106
13    103339194    rs641652    G    A    208.07    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.0;ReadPosRankSum=-1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267273    GT:AD:DP:GQ:PL    0/1:9,7:16:99:238,0,311
13    103339365    rs660207    A    G    950.50    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=58;Dels=0.0;FS=1.013;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.325;QD=16.39;ReadPosRankSum=-0.639;SNPEFF_AMINO_ACID_CHANGE=L109;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_103339290_103339407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267273    GT:AD:DP:GQ:PL    0/1:27,31:58:99:980,0,760
13    103346659    rs7981120    G    A    575.07    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.265;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=51.02;MQ0=0;MQRankSum=1.865;QD=14.03;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267273    GT:AD:DP:GQ:PL    0/1:21,20:41:99:605,0,657
13    103346806    rs2390760    C    G    658.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=44.99;MQ0=0;QD=24.39;SNPEFF_AMINO_ACID_CHANGE=G15R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_103346719_103346854;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267273    GT:AD:DP:GQ:PL    1/1:0,27:27:57.17:691,57,0
13    103381522    rs8000750    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC168;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322527    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
13    103418728    rs8054    A    G    381.66    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=23;Dels=0.0;FS=10.307;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.523;QD=16.59;ReadPosRankSum=1.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487260    GT:AD:DP:GQ:PL    0/1:11,12:23:99:412,0,377
13    103420671    rs5806323    T    TA    635.07    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=5.045;DB;DP=60;FS=6.777;HRun=7;HaplotypeScore=238.2655;IndelType=I;MQ=59.41;MQ0=0;MQRankSum=-0.899;QD=10.58;ReadPosRankSum=2.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376019    GT:AD:DP:GQ:PL    0/1:37,23:60:99:674,0,658
13    103420680    rs1470654    C    A    724.24    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.845;DB;DP=53;Dels=0.0;FS=6.793;HRun=1;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;MQRankSum=-0.303;QD=13.66;ReadPosRankSum=1.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376019    GT:AD:DP:GQ:PL    0/1:29,24:53:99:754,0,752
13    103441731    rs12427768    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486540    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
13    103445609    rs11441956    G    GT    1298.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=65.4637;IndelType=I;MQ=60.98;MQ0=0;QD=39.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376004    GT:AD:DP:GQ:PL    1/1:2,31:33:90.30:1340,90,0
13    103459956    .    G    C    577.60    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.224;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.7427;MQ=59.03;MQ0=0;MQRankSum=-0.362;QD=12.03;ReadPosRankSum=-0.735;SNPEFF_AMINO_ACID_CHANGE=P113;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_103459496_103460095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIVM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257336    GT:AD:DP:GQ:PL    0/1:26,22:48:99:608,0,718
13    103474031    rs2148449    C    T    758.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIVM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474443    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:791,57,0
13    103484060    rs2181676    G    A    976.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIVM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257336    GT:AD:DP:GQ:PL    1/1:0,30:30:75.23:1010,75,0
13    103484107    rs3825519    C    T    375.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIVM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257336    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:409,30,0
13    103491172    rs2281886    G    A    454.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIVM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257336    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:488,36,0
13    103491223    rs7337774    C    G    108.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIVM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257336    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
13    103504517    rs1047768    T    C    2230.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=H46;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_103504468_103504643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355739    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2264,178,0
13    103506362    rs11290823    AT    A    318.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=4;HaplotypeScore=24.4562;IndelType=D;MQ=61.07;MQ0=0;QD=31.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375958    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:360,30,0
13    103506509    rs1535729    A    C    218.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375958    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:251,18,0
13    103510896    rs3736865    C    T    651.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=38.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375958    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:685,51,0
13    103510997    rs7321648    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375958    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
13    103514091    rs7982448    T    C    1455.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.46;MQ0=0;QD=33.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535557    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1489,114,0
13    103518769    rs6491716    T    C    993.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355739    GT:AD:DP:GQ:PL    1/1:0,32:32:78.25:1027,78,0
13    103520764    rs4772505    G    A    321.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481099    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
13    103524762    rs4150360    C    T    582.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481099    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:615,48,0
13    103527849    rs9514066    G    C    5683.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2618;MQ=59.49;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=G1053R;SNPEFF_CODON_CHANGE=Gga/Cga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_103527657_103528345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355739    GT:AD:DP:GQ:PL    1/1:0,171:171:99:5684,436,0
13    103527930    rs9514067    G    C    3626.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7675;MQ=59.64;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=G1080R;SNPEFF_CODON_CHANGE=Gga/Cga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_103527657_103528345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355739    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3626,292,0
13    103528337    rs873601    G    A    744.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375954    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:778,57,0
13    103543611    rs9518863    C    G    576.24    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.706;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.188;QD=20.58;ReadPosRankSum=1.882;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-255P5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298105    GT:AD:DP:GQ:PL    0/1:11,17:28:99:606,0,372
13    103544905    rs34557658    CTT    C    582.46    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.929;DB;DP=57;FS=0.0;HRun=14;HaplotypeScore=326.1249;IndelType=D;MQ=56.45;MQ0=1;MQRankSum=-0.032;QD=10.04;ReadPosRankSum=-0.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-255P5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298105    GT:AD:DP:GQ:PL    0/1:11,27:57:57.39:621,0,57
13    103547812    rs2146987    T    C    2149.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=34.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-255P5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298105    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2183,172,0
13    103698363    rs2301157    A    G    362.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245312    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:395,30,0
13    103698630    rs279940    C    T    726.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245312    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:760,57,0
13    103703579    rs8000956    T    C    1237.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.59;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245312    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1270,105,0
13    103705044    rs188096    A    C    1274.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=S171A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_103704970_103705058;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245312    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1307,99,0
13    103710571    rs142412008    G    A    1007.80    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=1.183;DB;DP=60;Dels=0.0;FS=2.26;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.372;QD=16.8;ReadPosRankSum=0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC10A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245312    GT:AD:DP:GQ:PL    0/1:23,37:60:99:1038,0,637
13    106119446    rs2391191    G    A    1079.08    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=96;Dels=0.0;FS=2.752;HRun=3;HaplotypeScore=1.7356;MQ=59.52;MQ0=0;MQRankSum=-1.541;QD=11.24;ReadPosRankSum=2.822;SNPEFF_AMINO_ACID_CHANGE=R30K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_106119402_106119490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DAOA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375936    GT:AD:DP:GQ:PL    0/1:55,41:96:99:1109,0,1756
13    107145463    rs7995379    G    C    1145.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.72;SNPEFF_AMINO_ACID_CHANGE=G309;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_107142093_107145776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245323    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1179,90,0
13    107145829    rs3742160    A    T    1222.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.636;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.665;MQ=59.36;MQ0=0;MQRankSum=-0.866;QD=33.95;ReadPosRankSum=-0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245323    GT:AD:DP:GQ:PL    1/1:1,35:36:56:1255,56,0
13    107145904    rs3742159    C    T    253.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245323    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:286,21,0
13    107147011    rs3818379    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245323    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
13    107187479    rs113560651    T    C    113.02    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.6;ReadPosRankSum=0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245323    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:143,0,27
13    107209378    rs9587157    T    C    1763.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6567;MQ=59.54;MQ0=0;QD=35.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARGLU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360629    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1796,132,0
13    107516247    rs9520222    T    C    3159.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.51;MQ0=0;QD=33.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328558    GT:AD:DP:GQ:PL    1/1:0,93:94:99:3193,238,0
13    107516389    rs9520223    C    T    3512.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=33.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328558    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3513,262,0
13    107516407    rs9520224    C    T    3593.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6809;MQ=59.13;MQ0=0;QD=33.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328558    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3593,268,0
13    107516570    rs9558886    A    G    1891.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=36.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328558    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1925,150,0
13    107516667    rs9520225    T    C    575.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.404;QD=27.42;ReadPosRankSum=-1.569;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328558    GT:AD:DP:GQ:PL    1/1:1,20:21:16.52:609,17,0
13    108288223    rs4772896    T    C    1244.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM155A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375915    GT:AD:DP:GQ:PL    1/1:0,34:34:96.30:1278,96,0
13    108288422    rs4772897    C    A    2326.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=38.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM155A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375915    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2360,175,0
13    108288722    rs9520531    C    A    124.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM155A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375915    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
13    108288730    rs9520532    A    G    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM155A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375915    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
13    108517801    rs35231512    G    A    206.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM155A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375915    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
13    108519066    rs35028871    CCTCT    C    284.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=45.8548;IndelType=D;MQ=55.43;MQ0=0;QD=35.59;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_108518030_108519083;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM155A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375915    GT:AD:DP:GQ:PL    1/1:3,5:8:18.06:327,18,0
13    108955464    rs1224145    C    G    246.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TNFSF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375887    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:280,24,0
13    108956169    rs1224146    T    A    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TNFSF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479435    GT:AD:DP:GQ:PL    0/1:2,2:4:69.25:70,0,69
13    109311665    rs149670466    C    T    148.17    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.398;DB;DP=27;Dels=0.0;FS=2.9;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.982;QD=5.49;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    0/1:19,8:27:99:178,0,692
13    109311775    rs4378499    G    A    736.87    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=59;Dels=0.0;FS=7.741;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.023;QD=12.49;ReadPosRankSum=-2.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    0/1:32,27:59:99:767,0,1043
13    109318212    rs55718090    G    A    1734.75    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=4.66;DB;DP=108;Dels=0.0;FS=3.058;HRun=0;HaplotypeScore=2.9979;MQ=59.48;MQ0=0;MQRankSum=-1.392;QD=16.06;ReadPosRankSum=-2.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    0/1:45,63:108:99:1765,0,1170
13    109318692    rs16972894    C    T    31.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.22;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    0/1:3,2:5:61.09:61,0,106
13    109446080    rs34426959    ATTG    A    268.03    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=59.9795;IndelType=D;MQ=59.24;MQ0=0;MQRankSum=0.135;QD=16.75;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    0/1:9,7:16:99:307,0,299
13    109458889    rs9514920    A    G    122.56    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.32;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    0/1:3,5:8:94.14:153,0,94
13    109459020    rs9301323    G    A    589.76    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.226;DB;DP=34;Dels=0.0;FS=1.5;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.362;QD=17.35;ReadPosRankSum=0.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    0/1:16,18:34:99:620,0,420
13    109472601    rs2146327    G    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    109496601    rs7989143    C    T    216.73    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=-0.66;QD=16.67;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    0/1:6,7:13:99:247,0,213
13    109496928    rs7989802    C    T    334.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.306;QD=22.29;ReadPosRankSum=-2.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    0/1:5,10:15:99:364,0,125
13    109518667    rs56326713    TA    T    288.51    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=3.575;DB;DP=29;FS=0.0;HRun=8;HaplotypeScore=95.9593;IndelType=D;MQ=59.36;MQ0=0;MQRankSum=-0.334;QD=9.95;ReadPosRankSum=-0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    0/1:14,15:29:99:328,0,357
13    109550561    rs7322768    A    G    410.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:444,33,0
13    109562621    rs2195734    T    A    410.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251041    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:444,33,0
13    109707594    rs141188908    TAC    T    264.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=37.8562;IndelType=D;MQ=56.84;MQ0=0;QD=26.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    1/1:1,9:10:27.08:307,27,0
13    109707827    rs9521141    T    C    1224.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.12;SNPEFF_AMINO_ACID_CHANGE=D1051;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_109707738_109707943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1258,93,0
13    109717928    rs1431267    A    G    814.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=25.45;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000397258    GT:AD:DP:GQ:PL    1/1:0,32:32:69.19:847,69,0
13    109753331    rs56414043    C    A    65.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.88;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    0/1:3,3:6:95.29:95,0,104
13    109777331    rs157023    G    T    186.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.866;QD=18.6;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    0/1:4,6:10:99:216,0,127
13    109777503    rs157024    A    G    839.26    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.238;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.065;QD=15.54;ReadPosRankSum=-0.147;SNPEFF_AMINO_ACID_CHANGE=I1171M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_109777460_109777706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    0/1:26,28:54:99:869,0,732
13    109779906    rs3815983    C    T    205.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=15;Dels=0.0;FS=2.796;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.648;QD=13.7;ReadPosRankSum=-0.766;SNPEFF_AMINO_ACID_CHANGE=P843;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_109779630_109780039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457511    GT:AD:DP:GQ:PL    0/1:6,9:15:99:236,0,204
13    109792472    rs275953    T    C    173.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
13    109793474    rs28705148    T    C    302.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=27.53;SNPEFF_AMINO_ACID_CHANGE=V1616;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_109792612_109793724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    1/1:0,11:11:27.06:336,27,0
13    109793720    rs7986595    A    C    152.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=16.92;SNPEFF_AMINO_ACID_CHANGE=A1698;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_109792612_109793724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    1/1:0,9:9:15.04:185,15,0
13    109832084    rs1033870    G    A    127.97    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.532;QD=11.63;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    0/1:6,5:11:99:158,0,219
13    109858890    rs11430851    A    AT    308.76    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=43.374;IndelType=I;MQ=58.78;MQ0=0;MQRankSum=-0.449;QD=16.25;ReadPosRankSum=1.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356711    GT:AD:DP:GQ:PL    0/1:10,9:19:99:348,0,332
13    110408608    rs1865434    C    T    689.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375856    GT:AD:DP:GQ:PL    1/1:0,23:23:51.17:723,51,0
13    110434310    rs11618950    G    A    60.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=6.72;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375856    GT:AD:DP:GQ:PL    0/1:6,3:9:90.44:90,0,203
13    110435953    rs4773092    A    G    34.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.41;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=C816;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110434389_110438915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375856    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:64,0,32
13    110436232    rs3742210    G    A    36.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.03;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=S723;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110434389_110438915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375856    GT:AD:DP:GQ:PL    0/1:3,2:6:49.15:66,0,49
13    110807474    rs615742    T    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
13    110807496    rs616089    T    C    202.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
13    110813709    rs1133219    G    A    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.87;SNPEFF_AMINO_ACID_CHANGE=A1133;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110813539_110813716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:79,6,0
13    110818598    rs3742207    T    G    1028.30    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.442;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.792;QD=12.7;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=Q1334H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110818579_110818650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375820    GT:AD:DP:GQ:PL    0/1:44,37:81:99:1058,0,1380
13    110819362    rs1213026    A    G    405.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.218;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.069;QD=14.5;ReadPosRankSum=0.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:14,14:28:99:436,0,500
13    110819457    rs652572    A    G    1285.88    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.598;DB;DP=110;Dels=0.0;FS=4.319;HRun=1;HaplotypeScore=1.79;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=11.69;ReadPosRankSum=0.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:58,52:110:99:1316,0,1681
13    110819460    rs1778817    G    A    1489.97    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=3.356;DB;DP=115;Dels=0.0;FS=6.744;HRun=0;HaplotypeScore=1.79;MQ=60.0;MQ0=0;MQRankSum=-0.458;QD=12.96;ReadPosRankSum=0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:62,53:115:99:1520,0,1500
13    110819586    rs589985    G    A    1321.77    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.525;DB;DP=92;Dels=0.0;FS=0.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.214;QD=14.37;ReadPosRankSum=-0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:42,50:92:99:1352,0,1265
13    110821834    rs1838557    G    A    165.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.998;MQ=47.82;MQ0=0;MQRankSum=-0.572;QD=20.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:2,6:8:56.58:196,0,57
13    110822288    rs28544154    G    A    100.31    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=-0.731;QD=20.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:1,4:5:12.03:133,12,0
13    110824974    rs2289799    C    G    693.05    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=37;Dels=0.0;FS=3.921;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.634;QD=18.73;ReadPosRankSum=0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:15,22:37:99:723,0,466
13    110827303    rs1000989    T    C    88.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.47;QD=8.06;ReadPosRankSum=1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:5,6:11:99:119,0,181
13    110827318    rs1000990    T    C    96.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.098;QD=9.63;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:5,5:10:99:126,0,181
13    110827574    rs874203    T    A    565.71    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.337;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.56;MQ0=0;MQRankSum=1.009;QD=10.67;ReadPosRankSum=-0.427;SNPEFF_AMINO_ACID_CHANGE=R1063;SNPEFF_CODON_CHANGE=cgA/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110827565_110827704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375820    GT:AD:DP:GQ:PL    0/1:32,21:53:99:596,0,892
13    110827580    rs874204    C    T    517.45    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.44;DB;DP=55;Dels=0.0;FS=2.473;HRun=0;HaplotypeScore=0.9734;MQ=59.58;MQ0=0;MQRankSum=1.165;QD=9.41;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=G1061;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110827565_110827704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375820    GT:AD:DP:GQ:PL    0/1:34,21:55:99:547,0,867
13    110828891    rs1975514    T    C    191.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.116;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.501;QD=9.58;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:12,8:20:99:222,0,429
13    110828922    rs1562173    G    A    257.31    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.536;DB;DP=22;Dels=0.0;FS=4.246;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.469;QD=11.7;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:13,9:22:99:287,0,433
13    110830090    rs2305081    G    A    69.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.67;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:5,3:8:99:99,0,167
13    110831451    rs503053    T    C    172.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.779;QD=14.37;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:6,6:12:99:202,0,213
13    110833564    rs16975491    C    T    185.72    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.71;MQ0=0;MQRankSum=-1.708;QD=10.32;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:10,8:18:99:216,0,361
13    110833702    rs16975492    C    T    299.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.707;DB;DP=22;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.263;QD=13.6;ReadPosRankSum=0.131;SNPEFF_AMINO_ACID_CHANGE=P710;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110833639_110833736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375820    GT:AD:DP:GQ:PL    0/1:11,11:22:99:329,0,321
13    110835195    rs7329411    C    A    34.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
13    110838646    rs565470    A    G    729.43    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.962;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.62;MQ0=0;MQRankSum=-2.866;QD=11.96;ReadPosRankSum=0.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543140    GT:AD:DP:GQ:PL    0/1:35,26:61:99:759,0,1133
13    110838703    rs2305080    T    C    1245.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.996;DB;DP=115;Dels=0.0;FS=1.577;HRun=0;HaplotypeScore=0.9989;MQ=59.6;MQ0=0;MQRankSum=-0.19;QD=10.83;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543140    GT:AD:DP:GQ:PL    0/1:67,48:115:99:1276,0,1918
13    110839428    rs9521638    A    G    1031.91    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.526;DB;DP=83;Dels=0.0;FS=2.082;HRun=0;HaplotypeScore=0.9983;MQ=59.78;MQ0=0;MQRankSum=-0.224;QD=12.43;ReadPosRankSum=1.455;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543140    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1062,0,1333
13    110839550    rs536174    T    G    2361.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=T555P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110839485_110839676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375820    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2394,181,0
13    110845314    rs685884    G    A    159.71    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.433;QD=9.39;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:8,9:17:99:190,0,246
13    110850770    rs683309    T    C    943.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:976,72,0
13    110850842    rs995224    A    G    500.38    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.809;DB;DP=44;Dels=0.0;FS=4.638;HRun=4;HaplotypeScore=1.8273;MQ=59.48;MQ0=0;MQRankSum=0.305;QD=11.37;ReadPosRankSum=1.057;SNPEFF_AMINO_ACID_CHANGE=P413;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110850814_110850984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:23,21:44:99:530,0,731
13    110851036    rs995223    T    C    402.29    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.79;MQ=60.0;MQ0=0;MQRankSum=-0.355;QD=17.49;ReadPosRankSum=0.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:8,15:23:99:432,0,214
13    110855677    rs538390    G    T    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:4,2:6:65.94:66,0,125
13    110856153    rs648705    A    C    74.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.85;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:2,3:5:66.50:104,0,66
13    110856180    rs648735    A    G    42.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.17;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
13    110857823    rs482757    C    T    2019.03    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=147;Dels=0.0;FS=3.982;HRun=0;HaplotypeScore=0.9469;MQ=59.69;MQ0=0;MQRankSum=0.208;QD=13.73;ReadPosRankSum=-1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:80,67:147:99:2049,0,2328
13    110857895    rs677877    A    G    1469.83    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=5.515;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.41;MQ0=0;MQRankSum=-0.986;QD=13.36;ReadPosRankSum=-0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:55,54:110:99:1500,0,1669
13    110859069    rs9588116    G    C    986.35    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.599;DB;DP=65;Dels=0.0;FS=13.335;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.02;QD=15.17;ReadPosRankSum=0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:33,32:65:99:1016,0,1071
13    110859316    rs67772891    GA    G    193.92    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=32;FS=0.0;HRun=12;HaplotypeScore=105.8677;IndelType=D;MQ=59.62;MQ0=0;MQRankSum=-0.217;QD=6.06;ReadPosRankSum=0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:18,14:32:99:233,0,235
13    110859690    rs598819    A    G    622.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:656,48,0
13    110859743    rs598893    C    T    653.70    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.783;DB;DP=38;Dels=0.0;FS=1.471;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.488;QD=17.2;ReadPosRankSum=1.789;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:16,22:38:99:684,0,480
13    110861096    rs35092560    CTA    C    344.36    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=3.633;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=57.8921;IndelType=D;MQ=59.36;MQ0=0;MQRankSum=-1.592;QD=18.12;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:9,10:19:99:383,0,449
13    110861342    rs12869358    T    C    169.53    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.984;QD=11.3;ReadPosRankSum=0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:8,7:15:99:200,0,275
13    110861395    rs12868203    A    T    63.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.537;QD=10.5;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:3,3:6:93:93,0,97
13    110861417    rs12869391    T    A    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
13    110861422    rs12868210    A    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
13    110861444    rs9559744    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
13    110861620    rs35638294    T    TAAAG    413.95    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=3.266;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=100.5656;IndelType=I;MQ=51.64;MQ0=0;MQRankSum=-3.367;QD=24.35;ReadPosRankSum=2.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:11,6:17:99:453,0,608
13    110861651    rs10687642    G    GAA    361.07    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=3.937;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=162.8302;IndelType=I;MQ=51.65;MQ0=0;MQRankSum=-4.0;QD=15.7;ReadPosRankSum=-1.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:18,5:23:99:400,0,549
13    110861670    rs7332120    G    A    119.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.25;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=53.41;MQ0=0;MQRankSum=-3.356;QD=4.8;ReadPosRankSum=-2.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:15,10:25:99:150,0,448
13    110861671    rs7333204    T    C    116.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=53.41;MQ0=0;MQRankSum=-2.801;QD=4.68;ReadPosRankSum=-2.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:15,10:25:99:147,0,458
13    110861785    rs645114    C    G    269.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.334;DB;DP=42;Dels=0.0;FS=3.186;HRun=0;HaplotypeScore=1.4538;MQ=57.2;MQ0=0;MQRankSum=-1.401;QD=6.42;ReadPosRankSum=-0.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:28,14:42:99:300,0,901
13    110862268    rs2166207    A    C    1397.38    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.429;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=0.582;QD=18.15;ReadPosRankSum=0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:27,50:77:99:1427,0,877
13    110862303    rs9521649    G    A    1185.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.471;DB;DP=70;Dels=0.0;FS=4.821;HRun=0;HaplotypeScore=3.9831;MQ=59.04;MQ0=0;MQRankSum=1.672;QD=16.94;ReadPosRankSum=-0.198;SNPEFF_AMINO_ACID_CHANGE=S204;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_110862300_110862389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:28,42:70:99:1216,0,810
13    110866065    rs3737328    C    T    129.22    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.054;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.488;QD=8.08;ReadPosRankSum=2.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:10,6:16:99:159,0,335
13    110866265    rs9521650    G    A    1739.05    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=4.413;DB;DP=108;Dels=0.0;FS=0.763;HRun=0;HaplotypeScore=3.5964;MQ=59.36;MQ0=0;MQRankSum=0.076;QD=16.1;ReadPosRankSum=0.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:51,57:108:99:1769,0,1244
13    110895092    rs41275104    A    G    2527.33    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=4.522;DB;DP=181;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.6586;MQ=59.62;MQ0=0;MQRankSum=-1.08;QD=13.96;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375815    GT:AD:DP:GQ:PL    0/1:87,94:181:99:2557,0,2792
13    111076940    rs4771678    T    C    243.15    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.89;MQ0=0;MQRankSum=-0.929;QD=20.26;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:4,8:12:99:273,0,129
13    111076987    rs71127938    C    CAAAA    317.35    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=150.0831;IndelType=I;MQ=56.84;MQ0=0;MQRankSum=0.163;QD=15.11;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:15,5:21:99:356,0,336
13    111077197    rs4238272    G    A    1367.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=30.38;SNPEFF_AMINO_ACID_CHANGE=T99;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111077081_111077215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1400,105,0
13    111077400    rs66983274    AT    A    534.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=4;HaplotypeScore=58.6669;IndelType=D;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400163    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:576,48,0
13    111077450    rs7326522    G    A    169.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400163    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
13    111080609    rs7334986    G    A    111.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400163    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
13    111090734    rs9559799    G    A    238.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
13    111091995    rs7991229    T    G    183.07    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.807;DB;DP=23;Dels=0.0;FS=4.586;HRun=0;HaplotypeScore=0.9469;MQ=59.19;MQ0=0;MQRankSum=-0.226;QD=7.96;ReadPosRankSum=1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:15,8:23:99:213,0,538
13    111098017    rs4771680    T    C    32.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.69;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:4,3:7:62.84:63,0,108
13    111098110    rs7489705    C    T    373.66    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=17;Dels=0.0;FS=4.523;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.156;QD=21.98;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:6,11:17:99:404,0,194
13    111098226    rs4103    C    T    566.49    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.763;DB;DP=49;Dels=0.0;FS=2.627;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.014;QD=11.56;ReadPosRankSum=0.763;SNPEFF_AMINO_ACID_CHANGE=P336;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111098176_111098229;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:28,20:49:99:596,0,855
13    111098338    rs7988186    A    T    444.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:478,36,0
13    111099057    rs45612833    G    A    568.34    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=3.669;DB;DP=29;Dels=0.0;FS=2.716;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=19.6;ReadPosRankSum=2.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:11,17:29:99:598,0,228
13    111099122    rs7326449    G    A    960.86    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.356;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4097;MQ=59.75;MQ0=0;MQRankSum=0.38;QD=12.64;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:40,36:76:99:991,0,1239
13    111109415    rs9521779    C    G    91.31    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.95;MQ0=2;MQRankSum=0.69;QD=4.15;ReadPosRankSum=-0.591;SNPEFF_AMINO_ACID_CHANGE=Q256H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111108743_111109703;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2-AS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458403    GT:AD:DP:GQ:PL    0/1:17,5:22:99:121,0,263
13    111109461    rs9515215    A    G    290.87    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=25;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=0.5784;MQ=47.58;MQ0=2;MQRankSum=0.688;QD=11.63;ReadPosRankSum=1.702;SNPEFF_AMINO_ACID_CHANGE=M241T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111108743_111109703;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2-AS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458403    GT:AD:DP:GQ:PL    0/1:9,16:25:99:321,0,196
13    111110069    rs189880291    G    A    228.12    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.376;QD=8.15;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2-AS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458403    GT:AD:DP:GQ:PL    0/1:17,11:28:99:258,0,548
13    111118580    rs1927352    G    A    75.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478681    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
13    111130226    rs9559818    G    A    135.44    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.2;MQ0=0;MQRankSum=-1.134;QD=10.42;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494852    GT:AD:DP:GQ:PL    0/1:8,5:13:99:165,0,241
13    111132413    rs72657977    C    T    97.03    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.135;QD=8.09;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:7,5:12:99:127,0,244
13    111132490    rs4773194    A    G    1243.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1277,102,0
13    111132556    rs9521803    C    T    1000.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9979;MQ=58.69;MQ0=0;MQRankSum=-0.121;QD=12.21;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:45,36:82:99:1031,0,1238
13    111134780    rs3803229    G    A    2261.13    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=7.008;DB;DP=131;Dels=0.0;FS=5.283;HRun=3;HaplotypeScore=1.9992;MQ=59.82;MQ0=0;MQRankSum=-1.223;QD=17.26;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:57,74:131:99:2291,0,1556
13    111137167    rs1983930    T    C    553.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:587,45,0
13    111137906    rs9521806    G    A    321.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=45.17;MQ0=0;QD=13.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,23:23:30.08:355,30,0
13    111143755    rs413756    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
13    111145310    rs2274545    A    C    65.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.89;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    0/1:3,3:6:95.34:95,0,108
13    111145676    rs2391833    G    C    927.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,36:36:84.22:961,84,0
13    111153934    rs378601    G    A    162.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
13    111154058    rs439831    T    A    1049.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=27.62;SNPEFF_AMINO_ACID_CHANGE=P1268;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111154015_111154131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,38:38:81.22:1082,81,0
13    111154061    rs409858    T    C    1071.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=28.97;SNPEFF_AMINO_ACID_CHANGE=G1269;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111154015_111154131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,37:37:81.26:1105,81,0
13    111154160    rs2281968    G    A    747.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:781,57,0
13    111154377    rs364488    G    A    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
13    111155363    rs406174    G    A    1182.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,33:33:90.30:1215,90,0
13    111155428    rs401316    C    T    1567.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1601,126,0
13    111155773    rs438758    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_AMINO_ACID_CHANGE=T1361;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111155730_111155828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
13    111156011    rs422514    A    C    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
13    111156411    rs414881    G    A    1055.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,32:33:81.26:1088,81,0
13    111156499    rs4771683    C    T    1080.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_AMINO_ACID_CHANGE=F1430;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111156495_111156611;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1113,87,0
13    111156773    rs4771684    A    G    128.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
13    111158874    rs445348    A    G    515.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=28.64;SNPEFF_AMINO_ACID_CHANGE=P1505;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111158762_111158953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,18:18:42.12:549,42,0
13    111159054    rs7316969    G    A    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257309    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
13    111164102    rs3742186    T    C    46.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480609    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
13    111164198    rs2479426    T    C    145.96    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.92;QD=18.25;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480609    GT:AD:DP:GQ:PL    0/1:3,5:8:91.76:176,0,92
13    111176393    rs419244    A    G    1494.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=F108;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111175417_111176544;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267328    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1528,120,0
13    111274467    rs441805    G    A    57.63    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.4;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309957    GT:AD:DP:GQ:PL    0/1:6,3:9:87.63:88,0,117
13    111274915    rs383382    A    G    121.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309957    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
13    111276726    rs10544782    ATATCT    A    235.65    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=3.11;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=102.4946;IndelType=D;MQ=57.77;MQ0=0;MQRankSum=0.369;QD=11.22;ReadPosRankSum=1.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309957    GT:AD:DP:GQ:PL    0/1:16,5:21:99:275,0,1001
13    111280002    rs3742193    T    C    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309957    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
13    111280078    rs3742194    G    C    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309957    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:80,6,0
13    111289698    rs3825467    A    G    135.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=9.06;ReadPosRankSum=-0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397191    GT:AD:DP:GQ:PL    0/1:10,5:15:99:166,0,332
13    111290880    rs330563    G    A    543.11    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.478;DB;DP=37;Dels=0.0;FS=1.43;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.168;QD=14.68;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397191    GT:AD:DP:GQ:PL    0/1:17,20:37:99:573,0,545
13    111294920    rs76743748    G    GC    428.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=5;HaplotypeScore=28.1799;IndelType=I;MQ=60.77;MQ0=0;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309957    GT:AD:DP:GQ:PL    1/1:2,12:14:36.12:471,36,0
13    111298392    rs436462    A    G    518.85    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.033;QD=10.81;ReadPosRankSum=0.228;SNPEFF_AMINO_ACID_CHANGE=D151;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111298314_111298437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542993    GT:AD:DP:GQ:PL    0/1:29,19:48:99:549,0,870
13    111319754    rs4628819    T    C    2004.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=E22;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111319687_111319820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542993    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2037,153,0
13    111319884    rs9521884    G    A    789.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257347    GT:AD:DP:GQ:PL    1/1:0,28:28:63.18:822,63,0
13    111329610    rs76103038    A    G    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.6;MQ0=0;QD=16.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257347    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:116,9,0
13    111329612    rs78214217    A    G    82.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.6;MQ0=0;QD=16.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257347    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:115,9,0
13    111340342    rs2304767    G    A    388.17    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.529;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=59.33;MQ0=0;MQRankSum=0.461;QD=13.86;ReadPosRankSum=0.315;SNPEFF_AMINO_ACID_CHANGE=L130;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111340294_111340365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542709    GT:AD:DP:GQ:PL    0/1:13,15:28:99:418,0,448
13    111354110    rs9555724    T    C    84.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485188    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
13    111367650    rs1441043    A    G    41.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.86;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_13_111367329_111368355;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375774    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
13    111368164    rs7338333    T    G    220.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.48;SNPEFF_AMINO_ACID_CHANGE=L125R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111367329_111368355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375774    GT:AD:DP:GQ:PL    1/1:0,8:9:21.05:253,21,0
13    111368316    rs9555726    C    T    399.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=24.96;SNPEFF_AMINO_ACID_CHANGE=L176;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111367329_111368355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ING1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375774    GT:AD:DP:GQ:PL    1/1:0,16:16:33.10:432,33,0
13    111531885    rs1547178    C    A    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485844    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
13    111562803    rs35930208    T    C    178.84    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.253;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=8.52;ReadPosRankSum=-0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267339    GT:AD:DP:GQ:PL    0/1:13,8:21:99:209,0,482
13    111566989    rs59070384    A    G    69.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267339    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:102,9,0
13    111567039    rs56924528    G    C    122.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267339    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:155,12,0
13    111567385    rs4773274    T    C    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310847    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
13    111857428    rs7317770    G    A    43.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218789    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:73,0,29
13    111953625    rs4771739    G    A    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218789    GT:AD:DP:GQ:PL    0/1:2,2:4:63.55:70,0,64
13    111955465    rs1555751    T    C    429.57    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.663;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=59.39;MQ0=0;MQRankSum=-0.979;QD=11.3;ReadPosRankSum=-1.447;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARHGEF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218789    GT:AD:DP:GQ:PL    0/1:20,18:38:99:460,0,648
13    111973050    rs11841171    G    A    223.13    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=24.79;ReadPosRankSum=-0.762;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_13_111973015_111973109;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C13orf16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283547    GT:AD:DP:GQ:PL    0/1:2,7:9:43.21:253,0,43
13    111973098    rs12855715    T    C    597.86    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.559;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=0.0;QD=19.93;ReadPosRankSum=-0.129;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C13orf16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497241    GT:AD:DP:GQ:PL    0/1:11,19:30:99:628,0,348
13    111980478    rs2479955    A    G    77.20    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.76;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.394;QD=4.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C13orf16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283547    GT:AD:DP:GQ:PL    0/1:13,5:18:99:107,0,463
13    111980537    rs1359428    C    T    261.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.623;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.095;QD=7.92;ReadPosRankSum=-0.286;SNPEFF_AMINO_ACID_CHANGE=D22;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_111980530_111980640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C13orf16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283547    GT:AD:DP:GQ:PL    0/1:22,11:33:99:291,0,617
13    112278338    rs7992732    G    A    757.01    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=67;Dels=0.0;FS=2.374;HRun=1;HaplotypeScore=0.9993;MQ=59.66;MQ0=0;MQRankSum=-0.505;QD=11.3;ReadPosRankSum=-1.384;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_112278334_112278457;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-65D24.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375713    GT:AD:DP:GQ:PL    0/1:40,26:67:99:787,0,1216
13    112278521    rs7992659    C    G    733.67    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=50;Dels=0.0;FS=9.65;HRun=1;HaplotypeScore=0.7887;MQ=59.54;MQ0=0;MQRankSum=0.577;QD=14.67;ReadPosRankSum=-1.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-65D24.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375713    GT:AD:DP:GQ:PL    0/1:22,28:50:99:764,0,645
13    112297403    rs8000950    C    T    196.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-65D24.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375713    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
13    113032915    rs7324712    A    G    137.55    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.391;QD=8.09;ReadPosRankSum=-0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283550    GT:AD:DP:GQ:PL    0/1:10,7:17:99:168,0,368
13    113032962    rs9550063    G    C    466.93    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.936;DB;DP=38;Dels=0.0;FS=1.342;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=12.29;ReadPosRankSum=-1.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283550    GT:AD:DP:GQ:PL    0/1:21,17:38:99:497,0,565
13    113052388    rs2296895    A    G    1446.64    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.257;DB;DP=96;Dels=0.0;FS=0.768;HRun=1;HaplotypeScore=0.0;MQ=59.1;MQ0=0;MQRankSum=0.279;QD=15.07;ReadPosRankSum=-2.312;SNPEFF_AMINO_ACID_CHANGE=L28;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113052363_113052452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375699    GT:AD:DP:GQ:PL    0/1:47,49:96:99:1477,0,1275
13    113052562    rs2296894    T    C    64.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.577;MQ=47.51;MQ0=0;MQRankSum=-1.754;QD=8.0;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283550    GT:AD:DP:GQ:PL    0/1:4,4:8:94.01:94,0,110
13    113053470    rs10816    T    A    504.78    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.753;DB;DP=28;Dels=0.0;FS=4.192;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=18.03;ReadPosRankSum=-0.612;SNPEFF_AMINO_ACID_CHANGE=V111D;SNPEFF_CODON_CHANGE=gTc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113053380_113053487;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283550    GT:AD:DP:GQ:PL    0/1:11,17:28:99:535,0,336
13    113055295    rs3742225    A    G    146.42    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=13.31;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414180    GT:AD:DP:GQ:PL    0/1:5,6:11:99:176,0,177
13    113153617    rs17690363    G    A    367.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9947;MQ=58.55;MQ0=0;MQRankSum=1.448;QD=28.29;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261965    GT:AD:DP:GQ:PL    1/1:1,11:13:7.46:399,7,0
13    113158861    rs139460436    C    CAT    221.61    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=40.7038;IndelType=I;MQ=58.28;MQ0=0;MQRankSum=0.633;QD=20.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261965    GT:AD:DP:GQ:PL    0/1:5,6:11:99:261,0,116
13    113181415    rs9603905    G    A    418.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261965    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:452,36,0
13    113201819    rs41288616    C    T    48.73    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=15;Dels=0.0;FS=2.869;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.217;QD=3.25;ReadPosRankSum=1.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261965    GT:AD:DP:GQ:PL    0/1:12,3:15:78.72:79,0,349
13    113201852    rs75968030    A    G    43.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.515;DB;DP=18;Dels=0.0;FS=4.634;HRun=0;HaplotypeScore=5.981;MQ=54.65;MQ0=0;MQRankSum=-2.388;QD=2.44;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261965    GT:AD:DP:GQ:PL    0/1:12,6:18:73.87:74,0,362
13    113333684    rs7338610    C    T    1000.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_13_113333491_113333952;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C13orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356049    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1034,75,0
13    113439586    rs11616475    G    T    1421.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.51;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1454,114,0
13    113439694    rs140210789    C    T    115.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.38;QD=7.22;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    0/1:10,6:16:99:145,0,365
13    113479820    rs368865    A    G    319.12    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=43;Dels=0.0;FS=1.391;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=7.42;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=M317V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113479744_113479894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    0/1:29,14:43:99:349,0,910
13    113489103    .    G    A    187.47    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.091;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.996;QD=10.41;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    0/1:11,7:18:99:217,0,395
13    113512004    rs7325522    C    G    119.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489577    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
13    113525952    rs1765767    A    G    904.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    1/1:0,29:29:81.21:937,81,0
13    113527967    rs1320525    G    A    300.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.39;MQ0=0;MQRankSum=-0.812;QD=10.73;ReadPosRankSum=-0.07;SNPEFF_AMINO_ACID_CHANGE=S1046;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113527887_113527990;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    0/1:16,12:28:99:330,0,503
13    113530322    rs1278756    G    A    301.20    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=21.51;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    0/1:5,9:14:99:331,0,163
13    113534907    rs9577174    T    C    67.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=7.46;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    0/1:6,3:9:97.13:97,0,116
13    113534984    rs9577395    C    G    50.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=10.01;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    0/1:2,3:5:53.66:80,0,54
13    113535949    rs1278768    G    C    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    0/1:2,3:5:68.24:110,0,68
13    113536132    rs1290177    T    C    481    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.163;QD=14.58;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=N102;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113536130_113538272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419631    GT:AD:DP:GQ:PL    0/1:15,18:33:99:511,0,484
13    113536627    rs1278769    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283558    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
13    113563351    rs2993328    A    G    132.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375608    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
13    113633796    rs2993282    G    A    35.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375604    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
13    113634091    rs6577024    G    C    142.58    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.633;QD=12.96;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375601    GT:AD:DP:GQ:PL    0/1:4,7:11:99:173,0,104
13    113639671    rs9577407    G    A    182.12    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.329;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.27;QD=11.38;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375601    GT:AD:DP:GQ:PL    0/1:7,9:16:99:212,0,166
13    113639862    rs2993287    G    A    105.36    SnpCluster    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=-0.101;QD=8.1;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375601    GT:AD:DP:GQ:PL    0/1:7,6:13:99:135,0,243
13    113639869    rs3011543    A    G    297.37    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=27.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375601    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:330,24,0
13    113639872    rs3011542    A    G    293.48    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375601    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
13    113678830    rs2993305    T    C    249.38    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.531;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=13.13;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    0/1:10,9:19:99:279,0,353
13    113681400    rs3011512    G    T    261.72    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.953;QD=16.36;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397024    GT:AD:DP:GQ:PL    0/1:7,9:16:99:292,0,199
13    113698785    rs4907577    G    A    34.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.75;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    0/1:2,2:4:64.97:65,0,69
13    113708697    rs7319791    C    T    1225.44    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=5.616;DB;DP=80;Dels=0.0;FS=2.502;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.347;QD=15.32;ReadPosRankSum=-0.019;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473345    GT:AD:DP:GQ:PL    0/1:37,43:80:99:1255,0,976
13    113720476    rs2297192    C    T    85.45    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-1.077;QD=4.5;ReadPosRankSum=-0.983;SNPEFF_AMINO_ACID_CHANGE=T132;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113720360_113720484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440749    GT:AD:DP:GQ:PL    0/1:13,6:19:99:115,0,286
13    113728781    rs3814264    G    A    674    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.829;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0234;MQ=60.0;MQ0=0;MQRankSum=0.544;QD=11.62;ReadPosRankSum=1.269;SNPEFF_AMINO_ACID_CHANGE=A181;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113728758_113728877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440749    GT:AD:DP:GQ:PL    0/1:31,27:58:99:704,0,848
13    113729091    rs35463691    G    T    88.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464800    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
13    113735733    rs497724    G    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
13    113736543    rs527264    C    T    69.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
13    113738175    rs491455    G    A    340.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:373,27,0
13    113739518    rs546818    G    A    1075.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1109,81,0
13    113740706    rs1745949    A    G    84.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487354    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
13    113741851    rs514181    C    A    126.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487354    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
13    113742398    rs568077    C    G    88.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487354    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
13    113742805    rs7986589    C    G    720.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487354    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:753,60,0
13    113743768    rs534298    T    C    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487354    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
13    113744139    rs4907483    G    A    3886.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=59.61;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487354    GT:AD:DP:GQ:PL    1/1:0,117:117:99:3886,298,0
13    113745611    rs4907485    T    G    108.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=18.05;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    0/1:2,4:6:21.94:138,0,22
13    113747124    rs516497    A    G    187.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:221,18,0
13    113747135    rs505964    T    C    212.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=21.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,10:10:18.05:245,18,0
13    113748690    rs7327099    C    T    489.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:523,39,0
13    113749097    rs2480950    C    A    150    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:183,15,0
13    113749475    rs2146752    G    A    1665    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375597    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1698,123,0
13    113760415    rs2774030    G    A    43.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346342    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
13    113771962    rs564965    T    C    369.79    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.925;DB;DP=33;Dels=0.0;FS=3.471;HRun=3;HaplotypeScore=0.9578;MQ=54.05;MQ0=2;MQRankSum=-2.362;QD=11.21;ReadPosRankSum=1.409;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444337    GT:AD:DP:GQ:PL    0/1:14,19:33:99:400,0,406
13    113783990    rs3211736    C    T    413.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.837;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.804;QD=13.78;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375551    GT:AD:DP:GQ:PL    0/1:15,15:30:99:443,0,387
13    113792754    rs2251102    T    C    2050.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=59.62;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375551    GT:AD:DP:GQ:PL    1/1:0,60:61:99:2083,157,0
13    113792893    rs2026160    C    A    1293.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375551    GT:AD:DP:GQ:PL    1/1:0,33:33:96.32:1327,96,0
13    113801737    rs5960    C    T    662.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=31.53;SNPEFF_AMINO_ACID_CHANGE=T264;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113801693_113801800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375551    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:695,51,0
13    113801843    rs2031184    A    G    644.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410083    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:678,54,0
13    113812962    rs2273971    G    A    174.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342783    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:207,15,0
13    113818708    rs3024731    A    T    236.03    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=29.5;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342783    GT:AD:DP:GQ:PL    0/1:1,7:8:15.24:266,0,15
13    113818817    rs3024732    T    TC    768.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DB;DP=25;FS=0.0;HRun=2;HaplotypeScore=104.6764;IndelType=I;MQ=62.96;MQ0=0;MQRankSum=-0.144;QD=30.75;ReadPosRankSum=1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342783    GT:AD:DP:GQ:PL    1/1:4,21:25:67.02:811,67,0
13    113818900    rs564081    A    G    841.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.891;MQ=60.78;MQ0=0;QD=32.36;SNPEFF_AMINO_ACID_CHANGE=T149;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113818827_113818958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375547    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:874,66,0
13    113819009    rs494860    T    A    142.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=17.77;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342783    GT:AD:DP:GQ:PL    0/1:3,5:8:85.84:172,0,86
13    113819513    rs3024735    G    A    31.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=3.99;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342783    GT:AD:DP:GQ:PL    0/1:5,3:8:61.92:62,0,182
13    113826100    rs3024772    G    A    241.53    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.18;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.075;QD=8.63;ReadPosRankSum=0.527;SNPEFF_AMINO_ACID_CHANGE=R295H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113825908_113826694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375547    GT:AD:DP:GQ:PL    0/1:18,10:28:99:272,0,564
13    113833221    rs9549352    A    G    383.48    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.484;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=17.43;ReadPosRankSum=0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475433    GT:AD:DP:GQ:PL    0/1:10,12:22:99:413,0,314
13    113833499    rs486407    G    A    66.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=11.12;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475433    GT:AD:DP:GQ:PL    0/1:2,4:6:69.19:97,0,69
13    113845059    rs556990    T    C    73.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.44;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246505    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,140
13    113851633    rs9549356    A    G    226.11    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.269;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-1.402;QD=10.28;ReadPosRankSum=-0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246505    GT:AD:DP:GQ:PL    0/1:13,9:22:99:256,0,455
13    113852282    rs545026    A    G    129.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246505    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
13    113852425    rs546686    C    T    1064.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246505    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1097,81,0
13    113854600    rs3751412    T    C    208.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246505    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
13    113854715    rs3751413    C    T    346.29    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.923;DB;DP=37;Dels=0.0;FS=11.005;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.594;QD=9.36;ReadPosRankSum=0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246505    GT:AD:DP:GQ:PL    0/1:24,13:37:99:376,0,782
13    113888201    rs2146408    T    C    1184.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463426    GT:AD:DP:GQ:PL    1/1:0,31:31:90.30:1217,90,0
13    113888425    rs9549705    T    C    44.57    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=6.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463426    GT:AD:DP:GQ:PL    0/1:3,4:7:74.56:75,0,104
13    113889355    rs2287249    A    G    306.05    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.604;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=10.2;ReadPosRankSum=-0.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463426    GT:AD:DP:GQ:PL    0/1:16,14:30:99:336,0,514
13    113889474    rs2287250    C    T    620.26    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=1.129;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.82;QD=16.32;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463426    GT:AD:DP:GQ:PL    0/1:15,23:38:99:650,0,434
13    113889499    rs2287251    A    G    342.83    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=24;Dels=0.0;FS=2.395;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=14.28;ReadPosRankSum=0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463426    GT:AD:DP:GQ:PL    0/1:13,11:24:99:373,0,460
13    113891075    rs2287253    G    A    356.95    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=-1.357;QD=21.0;ReadPosRankSum=1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    0/1:6,11:17:99:387,0,175
13    113891359    rs2287254    A    G    45.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.36;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498562    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:75,0,31
13    113893625    rs7317558    G    A    243.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.285;QD=16.23;ReadPosRankSum=1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498562    GT:AD:DP:GQ:PL    0/1:6,9:15:99:273,0,120
13    113893729    rs3794422    G    A    679.47    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.581;DB;DP=42;Dels=0.0;FS=1.273;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=16.18;ReadPosRankSum=0.567;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498562    GT:AD:DP:GQ:PL    0/1:20,22:42:99:709,0,474
13    113897320    rs3764124    C    T    661.28    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.401;DB;DP=44;Dels=0.0;FS=2.977;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.43;QD=15.03;ReadPosRankSum=-1.289;SNPEFF_AMINO_ACID_CHANGE=D258;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113897282_113897474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    0/1:20,24:44:99:691,0,568
13    113900197    rs2302756    G    A    175.46    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=57.87;MQ0=0;MQRankSum=0.466;QD=15.95;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    0/1:5,6:11:99:205,0,130
13    113900557    rs9549711    C    T    35.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.78;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:65,0,31
13    113907190    rs9549714    T    G    39.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:71,6,0
13    113907391    rs9549365    A    G    534.93    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=2.775;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=20.57;ReadPosRankSum=-0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    0/1:7,19:26:99:565,0,221
13    113907644    rs9549366    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    113908826    rs9549717    A    G    42.62    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=6.09;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    0/1:4,3:7:72.61:73,0,142
13    113909339    rs2302757    A    G    412.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.302;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.36;MQ0=0;MQRankSum=0.239;QD=11.45;ReadPosRankSum=0.653;SNPEFF_AMINO_ACID_CHANGE=K544R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113909267_113909439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    0/1:20,16:36:99:442,0,719
13    113917767    rs4907602    T    C    1209.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326335    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1243,93,0
13    113960668    rs11453956    C    CA    731.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.243;DB;DP=36;FS=0.0;HRun=13;HaplotypeScore=228.4997;IndelType=I;MQ=55.31;MQ0=0;MQRankSum=-0.729;QD=20.31;ReadPosRankSum=-0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332556    GT:AD:DP:GQ:PL    1/1:7,27:36:39.83:773,40,0
13    113964756    rs4907608    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
13    113965176    rs9577503    C    A    1324.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=R186;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_113965024_113965182;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332556    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1357,99,0
13    113978969    rs912010    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
13    113999419    rs2025248    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
13    114018038    rs9549753    C    A    104.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=56.45;MQ0=0;MQRankSum=0.922;QD=13.06;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375430    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,114
13    114078558    rs41306688    A    C    740.74    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.471;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=15.76;ReadPosRankSum=2.426;SNPEFF_AMINO_ACID_CHANGE=L212R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114078532_114078664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPRHL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356501    GT:AD:DP:GQ:PL    0/1:21,26:47:99:771,0,599
13    114078685    rs41315960    C    T    472.55    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=4.387;DB;DP=33;Dels=0.0;FS=1.573;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.855;QD=14.32;ReadPosRankSum=-0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPRHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413169    GT:AD:DP:GQ:PL    0/1:14,19:33:99:503,0,352
13    114098496    rs9549796    G    T    130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPRHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356501    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
13    114112287    rs3814254    C    A    3904.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.18;MQ0=0;QD=34.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DCUN1D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375399    GT:AD:DP:GQ:PL    1/1:0,112:113:99:3905,298,0
13    114154230    rs3794443    G    A    262.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.489;QD=14.58;ReadPosRankSum=-0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473287    GT:AD:DP:GQ:PL    0/1:8,10:18:99:292,0,278
13    114155965    rs2490958    G    A    1332.96    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.807;DB;DP=96;Dels=0.0;FS=2.991;HRun=0;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=0.265;QD=13.88;ReadPosRankSum=0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473287    GT:AD:DP:GQ:PL    0/1:45,51:96:99:1363,0,1451
13    114157650    rs2248742    C    T    32.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.94;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473287    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:63,0,33
13    114158094    rs79532189    A    T    99.35    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.87;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375391    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:129,0,27
13    114175038    rs7319493    G    A    367.17    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.006;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=56.7;MQ0=0;MQRankSum=1.66;QD=8.54;ReadPosRankSum=-0.88;SNPEFF_AMINO_ACID_CHANGE=A445T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114174931_114175048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434316    GT:AD:DP:GQ:PL    0/1:27,16:43:99:397,0,757
13    114175109    rs12430718    C    G    176.72    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.766;QD=11.04;ReadPosRankSum=0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462877    GT:AD:DP:GQ:PL    0/1:10,6:16:99:207,0,318
13    114188114    rs2260728    T    C    72.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=18.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375391    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:103,0,29
13    114188165    rs2260727    C    T    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.358;QD=7.34;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375391    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,107
13    114188291    rs2260722    A    G    661.69    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.515;DB;DP=50;Dels=0.0;FS=2.211;HRun=1;HaplotypeScore=1.7621;MQ=59.45;MQ0=0;MQRankSum=-0.67;QD=13.23;ReadPosRankSum=0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375391    GT:AD:DP:GQ:PL    0/1:26,24:50:99:692,0,868
13    114193525    rs2257451    A    C    172.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.813;QD=14.36;ReadPosRankSum=-0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474393    GT:AD:DP:GQ:PL    0/1:6,6:12:99:202,0,208
13    114193547    rs2316117    G    A    356.93    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.978;QD=17.0;ReadPosRankSum=-0.616;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474393    GT:AD:DP:GQ:PL    0/1:8,13:21:99:387,0,222
13    114201742    rs2259387    T    C    41.55    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.135;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.749;QD=2.6;ReadPosRankSum=-0.538;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375391    GT:AD:DP:GQ:PL    0/1:13,3:16:71.54:72,0,450
13    114202532    rs12428641    T    C    119.13    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.996;MQ=40.36;MQ0=0;MQRankSum=-1.495;QD=17.02;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375391    GT:AD:DP:GQ:PL    0/1:2,5:7:26.72:149,0,27
13    114202560    rs12429311    G    A    63.03    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;MQRankSum=-0.55;QD=5.25;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375391    GT:AD:DP:GQ:PL    0/1:6,5:12:93.02:93,0,132
13    114202575    rs2259398    T    C    119.79    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=1.186;QD=8.56;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375391    GT:AD:DP:GQ:PL    0/1:6,8:14:99:150,0,206
13    114240067    rs113638790    CT    C    159.50    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.104;DB;DP=33;FS=3.31;HRun=16;HaplotypeScore=145.7906;IndelType=D;MQ=59.26;MQ0=0;MQRankSum=0.436;QD=4.83;ReadPosRankSum=-1.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375370    GT:AD:DP:GQ:PL    0/1:14,18:33:99:199,0,241
13    114288085    rs3751451    A    G    144.42    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=13.13;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453989    GT:AD:DP:GQ:PL    0/1:5,6:11:99:174,0,160
13    114288971    rs4150792    C    T    496.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=36;Dels=0.0;FS=2.16;HRun=3;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=2.085;QD=13.8;ReadPosRankSum=0.366;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453989    GT:AD:DP:GQ:PL    0/1:16,20:36:99:527,0,517
13    114309226    rs11164142    G    A    744.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_AMINO_ACID_CHANGE=Y48;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114309129_114309257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335288    GT:AD:DP:GQ:PL    1/1:0,21:22:57.18:777,57,0
13    114312354    rs9285616    T    G    114.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=R36;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114312348_114312501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335288    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
13    114322289    rs9796035    A    G    539.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=L196;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114321594_114322400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335678    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:573,45,0
13    114323997    rs9796234    T    C    6527.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=203;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335678    GT:AD:DP:GQ:PL    1/1:0,203:203:99:6528,500,0
13    114325584    rs113303775    G    A    52.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.61;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335678    GT:AD:DP:GQ:PL    0/1:4,4:8:82.89:83,0,92
13    114498034    rs9577895    G    A    249.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
13    114498328    rs117636092    G    A    97.24    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.45;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:127,0,28
13    114498362    rs28653123    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
13    114502416    rs7400029    T    C    606.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=21.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    1/1:0,28:28:51.14:640,51,0
13    114503915    rs9577890    C    T    227.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    1/1:0,10:10:27.02:260,27,0
13    114503916    rs9577889    A    G    227.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    1/1:0,10:10:27.02:260,27,0
13    114504003    rs3934940    A    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=13.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
13    114504024    rs3934941    A    G    36.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=12.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
13    114504036    rs67005433    T    C    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=14.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375348    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
13    114504663    rs41284482    G    A    71.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=7.12;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=V183I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114504626_114504785;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375353    GT:AD:DP:GQ:PL    0/1:6,4:10:99:101,0,175
13    114507836    rs7323732    A    G    141.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375353    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:174,15,0
13    114507840    rs7332019    G    A    223.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375353    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:256,21,0
13    114514918    rs34217684    T    A    935.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DB;DP=48;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.9983;MQ=59.52;MQ0=0;MQRankSum=0.217;QD=19.49;ReadPosRankSum=-0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375353    GT:AD:DP:GQ:PL    1/1:1,47:48:65.72:969,66,0
13    114515105    rs3088277    T    C    37.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM70B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375353    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
13    114530114    rs1803628    G    A    767.38    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.306;DB;DP=52;Dels=0.0;FS=1.07;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.435;QD=14.76;ReadPosRankSum=1.065;SNPEFF_AMINO_ACID_CHANGE=C145;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114529969_114530137;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GAS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418959    GT:AD:DP:GQ:PL    0/1:22,30:52:99:797,0,661
13    114531565    rs8191975    C    G    461.76    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=37;Dels=0.0;FS=3.053;HRun=0;HaplotypeScore=0.9665;MQ=58.87;MQ0=0;MQRankSum=-0.684;QD=12.48;ReadPosRankSum=-1.838;SNPEFF_AMINO_ACID_CHANGE=L122;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114531520_114531684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GAS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418959    GT:AD:DP:GQ:PL    0/1:18,19:37:99:492,0,599
13    114537583    .    T    G    72.17    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DP=7;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=1.7323;MQ=40.36;MQ0=0;MQRankSum=-1.495;QD=10.31;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=T205P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114537524_114537645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GAS6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355761    GT:AD:DP:GQ:PL    0/1:2,5:7:55.28:102,0,55
13    114542858    rs9604573    G    A    955.30    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=59;Dels=0.0;FS=1.176;HRun=1;HaplotypeScore=2.2772;MQ=59.61;MQ0=0;MQRankSum=0.441;QD=16.19;ReadPosRankSum=-0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GAS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327773    GT:AD:DP:GQ:PL    0/1:22,37:59:99:985,0,636
13    114542942    rs9604490    C    T    326.60    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=-0.906;QD=19.21;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GAS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327773    GT:AD:DP:GQ:PL    0/1:5,11:16:99:357,0,130
13    114542957    rs9604489    C    G    259.80    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.588;QD=16.24;ReadPosRankSum=-1.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GAS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327773    GT:AD:DP:GQ:PL    0/1:4,12:16:99:290,0,120
13    114748709    rs11147333    G    A    416.03    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.895;DB;DP=38;Dels=0.0;FS=3.377;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=10.95;ReadPosRankSum=0.68;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:20,18:38:99:446,0,511
13    114751359    rs10781677    A    G    175.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.259;QD=14.58;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:6,6:12:99:205,0,207
13    114761979    rs61967993    C    T    157.91    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.691;DB;DP=21;Dels=0.0;FS=4.506;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.196;QD=7.52;ReadPosRankSum=0.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:15,6:21:99:188,0,417
13    114772949    rs61971854    T    C    301.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:334,27,0
13    114772954    rs61971855    A    G    360.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=27.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:394,36,0
13    114773126    rs9562086    C    T    148.18    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.34;MQ0=0;MQRankSum=-0.028;QD=5.7;ReadPosRankSum=-0.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:17,9:26:99:178,0,526
13    114773188    rs61971856    A    G    255.49    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.931;QD=23.23;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:3,8:11:92.59:285,0,93
13    114774698    rs6560942    T    C    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
13    114774813    rs6560943    C    T    915.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    1/1:0,28:28:69.23:948,69,0
13    114774952    rs41291211    C    T    381.14    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.548;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.558;QD=14.12;ReadPosRankSum=-0.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:14,13:27:99:411,0,439
13    114774991    rs41291213    C    T    209.35    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=3.588;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.424;QD=9.97;ReadPosRankSum=-1.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:13,8:21:99:239,0,356
13    114778561    rs28714290    C    A    34.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=4.99;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542651    GT:AD:DP:GQ:PL    0/1:4,3:7:64.94:65,0,92
13    114778593    rs7322518    C    T    192.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=1.9995;MQ=60.0;MQ0=0;MQRankSum=-1.377;QD=16.03;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542651    GT:AD:DP:GQ:PL    0/1:4,8:12:89.87:222,0,90
13    114780648    rs2274719    A    C    1112.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542651    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1145,87,0
13    114780764    rs2274717    A    G    1395.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=T410;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_13_114780685_114780808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389544    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1428,114,0
13    114781579    rs61973864    G    A    129.38    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=10.78;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542651    GT:AD:DP:GQ:PL    0/1:7,5:12:99:159,0,178
13    114781868    rs2274716    G    A    95.07    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=8.64;ReadPosRankSum=1.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542651    GT:AD:DP:GQ:PL    0/1:7,4:11:99:125,0,243
13    114783929    rs6560952    T    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
13    114787031    rs2274713    T    G    664.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9532;MQ=58.99;MQ0=0;MQRankSum=-1.281;QD=28.91;ReadPosRankSum=0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    1/1:1,22:23:27.56:698,28,0
13    114787091    rs9525206    G    A    71.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.2;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:6,4:10:99:102,0,214
13    114789571    rs61973867    G    T    349.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.131;QD=15.9;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:11,11:22:99:380,0,325
13    114792842    rs3829340    C    T    1314.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=38.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1347,99,0
13    114793486    rs41315962    G    A    60.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=7.55;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:5,3:8:90.40:90,0,135
13    114817659    rs9525355    G    T    404.74    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.387;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=15.57;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:11,15:26:99:435,0,304
13    114817751    rs9525356    C    T    113.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.25;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:3,4:7:87.24:144,0,87
13    114838992    rs9525234    A    G    33.25    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.7;MQ0=0;MQRankSum=0.731;QD=6.65;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:1,4:5:24.41:63,0,24
13    114839484    rs4287443    G    A    67.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.25;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334062    GT:AD:DP:GQ:PL    0/1:3,3:6:97.50:98,0,106
13    115010254    rs3211416    C    T    365.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494766    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:399,30,0
14    19110105    .    A    G    81.24    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.97;MQ0=0;MQRankSum=-3.317;QD=3.69;ReadPosRankSum=-1.833;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:17,5:22:99:111,0,414
14    19110115    rs113741778    C    T    137.10    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=54.8;MQ0=0;MQRankSum=-3.901;QD=4.57;ReadPosRankSum=-0.747;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:23,7:30:99:167,0,602
14    19110239    rs112902543    T    C    332.65    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=2.612;DB;DP=87;Dels=0.0;FS=3.867;HRun=0;HaplotypeScore=0.8941;MQ=55.6;MQ0=0;MQRankSum=-5.116;QD=3.82;ReadPosRankSum=0.751;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:67,20:87:99:363,0,2220
14    19110251    rs112036853    A    C    304.92    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.858;DB;DP=92;Dels=0.0;FS=1.061;HRun=0;HaplotypeScore=1.8874;MQ=55.75;MQ0=0;MQRankSum=-5.698;QD=3.31;ReadPosRankSum=1.232;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:72,20:92:99:335,0,2347
14    19110263    rs113807567    T    C    363.97    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.421;DB;DP=96;Dels=0.0;FS=6.791;HRun=0;HaplotypeScore=1.9891;MQ=54.54;MQ0=1;MQRankSum=-5.172;QD=3.79;ReadPosRankSum=-0.299;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:71,25:96:99:394,0,2287
14    19110349    rs61969173    C    T    286.13    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=4.899;DB;DP=84;Dels=0.0;FS=1.277;HRun=0;HaplotypeScore=0.0;MQ=52.78;MQ0=3;MQRankSum=-6.601;QD=3.41;ReadPosRankSum=0.648;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:61,23:84:99:316,0,1605
14    19114436    .    C    T    30.10    QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.317;DP=242;Dels=0.0;FS=1.043;HRun=1;HaplotypeScore=5.1612;MQ=55.9;MQ0=2;MQRankSum=-8.954;QD=0.12;ReadPosRankSum=-0.712;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:208,33:242:60.09:60,0,6961
14    19114642    rs112497772    A    G    130.82    QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=204;DS;Dels=0.0;FS=5.534;HRun=0;HaplotypeScore=1.4972;MQ=51.51;MQ0=0;MQRankSum=-9.032;QD=0.64;ReadPosRankSum=1.673;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:169,35:204:99:161,0,5820
14    19114712    rs61476567    A    T    1364.99    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=2.271;DB;DP=242;Dels=0.0;FS=3.013;HRun=1;HaplotypeScore=2.9939;MQ=54.69;MQ0=8;MQRankSum=1.961;QD=5.64;ReadPosRankSum=0.003;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:184,58:242:99:1395,0,5624
14    19116892    rs61969175    G    A    80.53    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.24;MQ0=0;MQRankSum=-0.386;QD=6.19;ReadPosRankSum=-1.003;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:9,4:13:99:111,0,284
14    19117128    rs141168980    GA    G    517.77    PASS    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=3.885;DB;DP=178;FS=5.447;HRun=4;HaplotypeScore=600.8267;IndelType=D;MQ=42.47;MQ0=11;MQRankSum=-0.258;QD=2.49;ReadPosRankSum=-0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:179,29:178:99:557,0,6053
14    19117185    rs118092272    C    A    1122.99    HaplotypeScoreFilter13    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.119;DB;DP=173;Dels=0.0;FS=1.528;HRun=1;HaplotypeScore=13.2901;MQ=53.2;MQ0=0;MQRankSum=0.722;QD=6.49;ReadPosRankSum=0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:128,45:173:99:1153,0,4071
14    19117262    rs28430302    G    A    493.27    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=76;Dels=0.0;FS=3.931;HRun=0;HaplotypeScore=0.0;MQ=55.48;MQ0=0;MQRankSum=2.375;QD=6.49;ReadPosRankSum=1.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:57,19:76:99:523,0,1930
14    19117980    rs28722473    C    G    359.41    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.921;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1445;MQ=45.69;MQ0=0;MQRankSum=-2.11;QD=15.63;ReadPosRankSum=-1.291;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:9,14:23:99:389,0,304
14    19118011    .    C    T    195.58    HaplotypeScoreFilter13    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.524;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=27.5509;MQ=44.58;MQ0=1;MQRankSum=-0.32;QD=4.35;ReadPosRankSum=-0.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:36,9:45:99:226,0,1128
14    19118075    rs61969181    A    G    153.89    QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.033;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=46.64;MQ0=16;MQRankSum=-6.802;QD=1.15;ReadPosRankSum=-0.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:99,35:134:99:184,0,3637
14    19118192    rs77434589    A    G    912.05    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=1.856;DB;DP=250;DS;Dels=0.0;FS=2.753;HRun=0;HaplotypeScore=0.8667;MQ=52.92;MQ0=5;MQRankSum=-9.329;QD=3.65;ReadPosRankSum=-0.992;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:185,65:250:99:942,0,6293
14    19118232    rs147013435    C    G    936.86    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=1.068;DB;DP=250;DS;Dels=0.0;FS=2.802;HRun=1;HaplotypeScore=6.7953;MQ=53.01;MQ0=6;MQRankSum=-10.05;QD=3.75;ReadPosRankSum=-1.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:180,69:250:99:967,0,6453
14    19118254    rs140014336    T    A    911.23    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=3.89;DB;DP=250;DS;Dels=0.0;FS=2.999;HRun=1;HaplotypeScore=1.9243;MQ=52.7;MQ0=10;MQRankSum=-10.516;QD=3.64;ReadPosRankSum=1.677;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:180,70:250:99:941,0,6218
14    19118308    .    T    C    325.69    QDFilter2    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.699;DP=220;DS;Dels=0.0;FS=7.968;HRun=1;HaplotypeScore=4.2079;MQ=51.0;MQ0=16;MQRankSum=-10.377;QD=1.48;ReadPosRankSum=1.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:154,66:220:99:356,0,5593
14    19118330    .    T    C    272.58    QDFilter2    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.54;DP=220;DS;Dels=0.0;FS=11.382;HRun=0;HaplotypeScore=0.9665;MQ=50.82;MQ0=18;MQRankSum=-10.301;QD=1.24;ReadPosRankSum=-0.655;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549208    GT:AD:DP:GQ:PL    0/1:155,65:220:99:303,0,5666
14    19118375    rs145722730    G    C    77.82    HaplotypeScoreFilter13;QDFilter2    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=173;Dels=0.0;FS=2.129;HRun=0;HaplotypeScore=13.929;MQ=52.11;MQ0=15;MQRankSum=-8.049;QD=0.45;ReadPosRankSum=0.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:128,45:173:99:108,0,4725
14    19118405    rs146152937    T    C    117.10    QDFilter2    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=2.346;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.94;MQ0=6;MQRankSum=-7.003;QD=0.92;ReadPosRankSum=-0.057;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:97,30:127:99:147,0,3405
14    19118569    rs28578483    A    G    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-754I20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514609    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:68,0,33
14    19123663    rs28587166    A    G    3652.06    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=6.287;DB;DP=246;DS;Dels=0.0;FS=0.468;HRun=1;HaplotypeScore=1.8824;MQ=55.95;MQ0=0;MQRankSum=-6.702;QD=14.79;ReadPosRankSum=2.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384179    GT:AD:DP:GQ:PL    0/1:127,119:246:99:3652,0,4100
14    19123816    rs111719869    CA    C    250.64    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=4.397;DB;DP=91;FS=0.0;HRun=10;HaplotypeScore=258.3264;IndelType=D;MQ=58.12;MQ0=0;MQRankSum=-1.284;QD=2.75;ReadPosRankSum=-0.622;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384179    GT:AD:DP:GQ:PL    0/1:69,21:91:99:290,0,1640
14    19378030    rs138051664    T    A    91.39    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.462;DB;DP=249;DS;Dels=0.0;FS=3.356;HRun=0;HaplotypeScore=15.8425;MQ=18.98;MQ0=63;MQRankSum=-3.057;QD=0.37;ReadPosRankSum=-2.221;SNPEFF_AMINO_ACID_CHANGE=L146H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19377522_19378606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR383656.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550708    GT:AD:DP:GQ:PL    0/1:163,85:249:99:121,0,2617
14    19378079    .    G    A    600.74    MQFilter40    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.864;DP=250;DS;Dels=0.0;FS=7.748;HRun=0;HaplotypeScore=3.6108;MQ=19.13;MQ0=78;MQRankSum=0.407;QD=2.4;ReadPosRankSum=-1.667;SNPEFF_AMINO_ACID_CHANGE=L162;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19377522_19378606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR383656.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000550708    GT:AD:DP:GQ:PL    0/1:204,46:250:99:631,0,2662
14    19378296    .    C    A    41.75    MQFilter40;QDFilter2    AB=0.923;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6425;MQ=5.73;MQ0=214;MQRankSum=2.598;QD=0.17;ReadPosRankSum=0.113;SNPEFF_AMINO_ACID_CHANGE=L235I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19377522_19378606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR383656.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550708    GT:AD:DP:GQ:PL    0/1:228,19:248:71.75:72,0,168
14    19378395    .    A    G    73.66    MQFilter40;QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=0.007;DP=249;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=10.75;MQ0=170;MQRankSum=-1.236;QD=0.3;ReadPosRankSum=-1.837;SNPEFF_AMINO_ACID_CHANGE=S268G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19377522_19378606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR383656.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550708    GT:AD:DP:GQ:PL    0/1:201,48:249:99:104,0,1029
14    19413363    .    G    A    171.44    MQFilter40;QDFilter2    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.364;DP=158;Dels=0.0;FS=3.213;HRun=0;HaplotypeScore=1.6553;MQ=22.99;MQ0=29;MQRankSum=-0.714;QD=1.09;ReadPosRankSum=-1.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-536C10.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548793    GT:AD:DP:GQ:PL    0/1:126,32:158:99:201,0,2261
14    19422536    rs140306405    C    G    179.30    HaplotypeScoreFilter13;MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=54;Dels=0.0;FS=21.725;HRun=0;HaplotypeScore=16.3042;MQ=37.69;MQ0=0;MQRankSum=-1.051;QD=3.32;ReadPosRankSum=1.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546860    GT:AD:DP:GQ:PL    0/1:42,12:54:99:209,0,933
14    19553372    .    G    A    125.30    MQFilter40;QDFilter2    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=5.969;DP=199;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8737;MQ=7.93;MQ0=147;MQRankSum=-0.663;QD=0.63;ReadPosRankSum=-1.179;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_19553365_19553937;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:118,81:199:99:155,0,177
14    19553436    .    C    T    64.77    MQFilter40;QDFilter2    AB=0.834;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DP=248;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2779;MQ=9.27;MQ0=158;MQRankSum=0.136;QD=0.26;ReadPosRankSum=0.18;SNPEFF_AMINO_ACID_CHANGE=S7L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19553365_19553937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:206,41:248:94.76:95,0,440
14    19553443    .    G    A    46.06    MQFilter40;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=4.88;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5439;MQ=9.06;MQ0=161;MQRankSum=0.299;QD=0.18;ReadPosRankSum=0.231;SNPEFF_AMINO_ACID_CHANGE=P9;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19553365_19553937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:211,39:250:76.05:76,0,424
14    19553642    .    A    G    200    MQFilter40;QDFilter2    AB=0.005;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DP=196;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8635;MQ=6.74;MQ0=155;MQRankSum=-1.733;QD=1.02;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=S76G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19553365_19553937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:1,195:196:3.43:229,0,3
14    19553764    rs77983807    A    G    2247.68    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.426;DB;DP=245;DS;Dels=0.0;FS=6.026;HRun=1;HaplotypeScore=5.7179;MQ=24.14;MQ0=24;MQRankSum=0.657;QD=9.17;ReadPosRankSum=0.18;SNPEFF_AMINO_ACID_CHANGE=K116;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19553365_19553937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:122,122:245:99:2278,0,1840
14    19553842    .    G    A    82.76    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.613;DP=244;DS;Dels=0.0;FS=16.879;HRun=2;HaplotypeScore=32.2767;MQ=15.18;MQ0=112;MQRankSum=-2.505;QD=0.34;ReadPosRankSum=0.905;SNPEFF_AMINO_ACID_CHANGE=K142;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19553365_19553937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:201,43:244:99:113,0,1544
14    19553845    rs145769706    C    A    597.60    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.92;DB;DP=248;DS;Dels=0.0;FS=11.599;HRun=0;HaplotypeScore=31.29;MQ=14.85;MQ0=119;MQRankSum=-0.944;QD=2.41;ReadPosRankSum=0.178;SNPEFF_AMINO_ACID_CHANGE=L143;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19553365_19553937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:155,93:248:99:628,0,888
14    19553852    rs138358738    G    A    425.68    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.542;DB;DP=237;DS;Dels=0.0;FS=8.08;HRun=1;HaplotypeScore=22.786;MQ=12.72;MQ0=129;MQRankSum=-0.103;QD=1.8;ReadPosRankSum=0.084;SNPEFF_AMINO_ACID_CHANGE=A146T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19553365_19553937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:149,88:237:99:456,0,587
14    19553978    .    A    T    93.87    MQFilter40;QDFilter2    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=2.547;DP=152;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=7.09;MQ0=128;MQRankSum=0.205;QD=0.62;ReadPosRankSum=-0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:120,32:152:99:124,0,141
14    19558679    .    G    A    160.08    MQFilter40;QDFilter2    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.571;DP=119;Dels=0.0;FS=4.2;HRun=0;HaplotypeScore=0.0;MQ=9.52;MQ0=93;MQRankSum=1.349;QD=1.35;ReadPosRankSum=-1.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:83,36:119:99:190,0,273
14    19563366    .    A    C    460.28    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.33;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.75;MQ0=105;MQRankSum=1.652;QD=3.11;ReadPosRankSum=-0.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    1/1:64,84:148:62.80:493,63,0
14    19565943    rs139109489    C    T    247.70    MQFilter40    AB=0.242;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.971;DB;DP=62;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=13.64;MQ0=12;MQRankSum=-0.885;QD=4.0;ReadPosRankSum=-1.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:15,47:62:40.88:278,0,41
14    19571464    .    G    T    172.91    MQFilter40    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=3.571;DP=74;Dels=0.01;FS=1.922;HRun=13;HaplotypeScore=9.4058;MQ=35.51;MQ0=1;MQRankSum=0.989;QD=2.31;ReadPosRankSum=3.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409832    GT:AD:DP:GQ:PL    0/1:44,29:74:99:203,0,935
14    19585159    .    G    A    32.20    MQFilter40    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.12;MQ0=3;MQRankSum=0.727;QD=4.6;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547889    GT:AD:DP:GQ:PL    0/1:1,6:7:12.70:62,0,13
14    19585357    rs78450896    A    G    1518.88    MQFilter40    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.065;DB;DP=173;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.72;MQ=18.39;MQ0=63;MQRankSum=5.29;QD=8.78;ReadPosRankSum=-5.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547889    GT:AD:DP:GQ:PL    0/1:89,83:173:99:1549,0,231
14    19585390    rs79225118    A    G    2180.94    MQFilter40    AB=0.337;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DB;DP=166;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=22.24;MQ0=25;MQRankSum=5.047;QD=13.14;ReadPosRankSum=2.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547889    GT:AD:DP:GQ:PL    0/1:56,110:166:78.30:2211,0,78
14    19585511    .    C    G    371.49    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.78;MQ0=86;MQRankSum=2.202;QD=2.77;ReadPosRankSum=-0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547889    GT:AD:DP:GQ:PL    1/1:76,58:134:35.15:404,35,0
14    19585517    .    T    C    280.85    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-3.032;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.74;MQ0=91;MQRankSum=1.611;QD=2.1;ReadPosRankSum=0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547889    GT:AD:DP:GQ:PL    1/1:80,54:134:23.20:314,23,0
14    19585527    .    A    G    255.22    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=8.64;MQ0=92;MQRankSum=2.182;QD=1.93;ReadPosRankSum=1.661;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547889    GT:AD:DP:GQ:PL    1/1:78,54:132:20.21:288,20,0
14    19806525    rs28565980    G    T    1076.59    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.602;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=37.93;MQ0=51;MQRankSum=2.254;QD=4.32;ReadPosRankSum=-0.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR11H12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359695    GT:AD:DP:GQ:PL    0/1:193,55:249:99:1107,0,3978
14    19806567    .    C    T    200.87    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.361;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7987;MQ=45.9;MQ0=18;MQRankSum=-7.884;QD=0.81;ReadPosRankSum=1.553;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR11H12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359695    GT:AD:DP:GQ:PL    0/1:186,62:249:99:231,0,6088
14    19806700    rs4111007    A    G    4705.18    PASS    AB=0.256;AC=1;AF=0.50;AN=2;BaseQRankSum=4.191;DB;DP=250;DS;Dels=0.0;FS=19.223;HRun=0;HaplotypeScore=6.2531;MQ=42.3;MQ0=7;MQRankSum=-7.852;QD=18.82;ReadPosRankSum=-0.131;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR11H12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359695    GT:AD:DP:GQ:PL    0/1:64,186:250:99:4705,0,1744
14    19806717    rs1575832    A    C    1235.59    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.772;DB;DP=248;DS;Dels=0.0;FS=1.273;HRun=0;HaplotypeScore=6.6397;MQ=41.2;MQ0=8;MQRankSum=0.709;QD=4.98;ReadPosRankSum=0.957;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR11H12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359695    GT:AD:DP:GQ:PL    0/1:186,62:248:99:1266,0,4983
14    19806874    rs146461426    A    T    2611.84    PASS    AB=0.277;AC=1;AF=0.50;AN=2;BaseQRankSum=4.135;DB;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5443;MQ=43.73;MQ0=1;MQRankSum=4.561;QD=21.77;ReadPosRankSum=4.345;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR11H12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359695    GT:AD:DP:GQ:PL    0/1:33,86:120:99:2642,0,642
14    19806988    .    G    T    648.29    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=3.085;DP=179;Dels=0.0;FS=2.901;HRun=0;HaplotypeScore=2.9759;MQ=41.93;MQ0=9;MQRankSum=-5.989;QD=3.62;ReadPosRankSum=-0.219;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR11H12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359695    GT:AD:DP:GQ:PL    0/1:126,53:179:99:678,0,3319
14    19807178    rs2260154    C    T    886.46    MQFilter40    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=2.357;DB;DP=141;Dels=0.0;FS=19.441;HRun=1;HaplotypeScore=0.0;MQ=39.71;MQ0=21;MQRankSum=-9.134;QD=6.29;ReadPosRankSum=1.416;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=OR11H12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359695    GT:AD:DP:GQ:PL    0/1:59,82:141:99:916,0,1845
14    19855589    rs76788399    G    C    74.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.21;MQ0=9;QD=5.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL589182.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493038    GT:AD:DP:GQ:PL    1/1:0,13:13:11.99:107,12,0
14    19889793    rs187412518    C    G    46.69    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=11;Dels=0.0;FS=7.202;HRun=0;HaplotypeScore=0.0;MQ=47.23;MQ0=0;MQRankSum=-0.633;QD=4.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2314B22.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400192    GT:AD:DP:GQ:PL    0/1:7,4:11:76.68:77,0,190
14    19889910    rs114693680    G    T    85.36    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.23;MQ0=0;MQRankSum=-0.326;QD=5.34;ReadPosRankSum=0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2314B22.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400192    GT:AD:DP:GQ:PL    0/1:12,4:16:99:115,0,308
14    19890068    rs28488273    T    C    178.07    MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.44;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=29.91;MQ0=2;MQRankSum=-1.898;QD=9.37;ReadPosRankSum=1.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2314B22.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400192    GT:AD:DP:GQ:PL    0/1:7,12:19:99:208,0,123
14    19891116    rs28488391    C    A    642.71    MQFilter40    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.42;DB;DP=117;Dels=0.0;FS=0.953;HRun=1;HaplotypeScore=0.0;MQ=29.81;MQ0=39;MQRankSum=1.461;QD=5.49;ReadPosRankSum=-1.121;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2314B22.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400192    GT:AD:DP:GQ:PL    0/1:76,41:117:99:673,0,1229
14    19891134    rs59324519    G    A    70.80    MQFilter40;QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=135;Dels=0.0;FS=2.664;HRun=0;HaplotypeScore=0.0;MQ=25.51;MQ0=65;MQRankSum=-1.47;QD=0.52;ReadPosRankSum=1.127;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-2314B22.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400192    GT:AD:DP:GQ:PL    0/1:113,22:135:99:101,0,1673
14    19990641    rs138327719    C    T    46.79    MQFilter40;QDFilter2    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.976;DB;DP=194;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=4.88;MQ0=171;MQRankSum=1.039;QD=0.24;ReadPosRankSum=0.22;SNPEFF_AMINO_ACID_CHANGE=K478;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_19990547_19990665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551509    GT:AD:DP:GQ:PL    0/1:151,42:194:29.41:77,0,29
14    20002167    .    CAA    C    207.05    QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DP=128;FS=11.152;HRun=20;HaplotypeScore=854.8039;IndelType=D;MQ=33.3;MQ0=13;MQRankSum=-0.503;QD=1.47;ReadPosRankSum=1.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344684    GT:AD:DP:GQ:PL    0/1:88,23:128:99:246,0,1272
14    20002181    rs185398916    A    T    126.72    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.659;DB;DP=195;Dels=0.0;FS=2.297;HRun=0;HaplotypeScore=16.8058;MQ=30.66;MQ0=13;MQRankSum=4.149;QD=0.65;ReadPosRankSum=3.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344684    GT:AD:DP:GQ:PL    0/1:169,26:195:99:157,0,2595
14    20002224    .    C    T    71    MQFilter40;QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6911;MQ=24.23;MQ0=91;MQRankSum=0.183;QD=0.29;ReadPosRankSum=-0.135;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEM;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000551509    GT:AD:DP:GQ:PL    0/1:212,36:248:99:101,0,2543
14    20002286    .    A    G    75.61    MQFilter40;QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DP=223;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=14.45;MQ0=152;MQRankSum=-1.102;QD=0.34;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=L379S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20002225_20002295;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344684    GT:AD:DP:GQ:PL    0/1:183,40:223:99:106,0,1264
14    20007701    rs138213305    G    A    162.93    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.977;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=13.25;MQ0=23;MQRankSum=-0.044;QD=3.97;ReadPosRankSum=0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344684    GT:AD:DP:GQ:PL    0/1:25,16:41:99:193,0,144
14    20010412    .    G    A    32.78    MQFilter40    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9557;MQ=25.76;MQ0=6;MQRankSum=1.589;QD=2.19;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344684    GT:AD:DP:GQ:PL    0/1:12,2:15:62.77:63,0,74
14    20136912    rs10151391    G    T    261.96    MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=2.107;DB;DP=19;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=33.74;MQ0=1;MQRankSum=-0.609;QD=13.79;ReadPosRankSum=-0.047;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548456    GT:AD:DP:GQ:PL    0/1:7,12:19:99:292,0,147
14    20136930    rs150483980    G    C    111    MQFilter40    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.305;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.87;MQ0=2;MQRankSum=-0.785;QD=3.47;ReadPosRankSum=-0.392;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548456    GT:AD:DP:GQ:PL    0/1:23,9:32:99:141,0,646
14    20136941    rs138353201    G    A    199.55    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.789;DB;DP=40;Dels=0.0;FS=2.558;HRun=0;HaplotypeScore=0.0;MQ=38.04;MQ0=4;MQRankSum=-1.581;QD=4.99;ReadPosRankSum=1.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548456    GT:AD:DP:GQ:PL    0/1:24,16:40:99:230,0,748
14    20136982    rs149558515    C    A    237.14    MQFilter40    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=87;Dels=0.0;FS=7.512;HRun=3;HaplotypeScore=1.748;MQ=31.33;MQ0=25;MQRankSum=-1.492;QD=2.73;ReadPosRankSum=0.746;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548456    GT:AD:DP:GQ:PL    0/1:68,18:87:99:267,0,1280
14    20137084    rs117962083    A    G    5421.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=38.05;MQ0=2;QD=28.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548456    GT:AD:DP:GQ:PL    1/1:1,186:187:99:5421,421,0
14    20137126    rs79288167    GA    G    2380.47    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.873;DB;DP=242;FS=2.234;HRun=11;HaplotypeScore=1544.2331;IndelType=D;MQ=42.01;MQ0=2;MQRankSum=-0.56;QD=9.64;ReadPosRankSum=0.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548456    GT:AD:DP:GQ:PL    0/1:25,126:242:99:2419,0,943
14    20137340    rs2999998    C    T    1354.84    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.611;DB;DP=156;Dels=0.0;FS=17.866;HRun=0;HaplotypeScore=0.0;MQ=47.16;MQ0=1;MQRankSum=-0.918;QD=8.68;ReadPosRankSum=0.888;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548456    GT:AD:DP:GQ:PL    0/1:100,56:156:99:1385,0,3103
14    20137484    rs7144170    C    G    1047.45    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=138;Dels=0.0;FS=0.778;HRun=0;HaplotypeScore=1.5226;MQ=55.87;MQ0=0;MQRankSum=1.735;QD=7.59;ReadPosRankSum=-0.014;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548456    GT:AD:DP:GQ:PL    0/1:91,46:138:99:1077,0,2941
14    20146255    rs147018882    C    T    1392.91    MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.056;DB;DP=233;Dels=0.0;FS=2.941;HRun=0;HaplotypeScore=0.9469;MQ=28.33;MQ0=45;MQRankSum=-0.032;QD=5.98;ReadPosRankSum=-0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-597A11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548217    GT:AD:DP:GQ:PL    0/1:150,83:233:99:1423,0,2632
14    20146528    rs60664680    G    GC    3184.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.0;HRun=1;HaplotypeScore=180.8758;IndelType=I;MQ=53.21;MQ0=1;QD=41.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-597A11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548217    GT:AD:DP:GQ:PL    1/1:3,73:75:99:3226,220,0
14    20146674    rs10141222    G    A    832.49    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.285;DB;DP=85;Dels=0.0;FS=19.379;HRun=0;HaplotypeScore=4.6561;MQ=46.93;MQ0=2;MQRankSum=-6.983;QD=9.79;ReadPosRankSum=-0.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-597A11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548217    GT:AD:DP:GQ:PL    0/1:46,39:85:99:862,0,1307
14    20146688    rs7147762    A    T    608.31    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=75;Dels=0.0;FS=5.024;HRun=0;HaplotypeScore=1.8808;MQ=48.0;MQ0=2;MQRankSum=-6.826;QD=8.11;ReadPosRankSum=0.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-597A11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548217    GT:AD:DP:GQ:PL    0/1:42,33:75:99:638,0,1373
14    20146769    rs7147795    A    C    349.15    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.601;DB;DP=65;Dels=0.0;FS=11.842;HRun=1;HaplotypeScore=0.6651;MQ=41.6;MQ0=6;MQRankSum=-5.73;QD=5.37;ReadPosRankSum=-0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-597A11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548217    GT:AD:DP:GQ:PL    0/1:32,33:65:99:379,0,977
14    20146809    rs7145720    C    G    75.95    MQFilter40;QDFilter2    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.616;DB;DP=78;Dels=0.0;FS=5.605;HRun=1;HaplotypeScore=0.7887;MQ=39.12;MQ0=13;MQRankSum=-6.254;QD=0.97;ReadPosRankSum=0.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-597A11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548217    GT:AD:DP:GQ:PL    0/1:42,36:78:99:106,0,1240
14    20181502    .    C    T    1144.66    MQFilter40    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.633;DP=200;DS;Dels=0.0;FS=6.522;HRun=0;HaplotypeScore=1.4679;MQ=20.85;MQ0=99;MQRankSum=1.043;QD=5.72;ReadPosRankSum=2.096;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556246    GT:AD:DP:GQ:PL    0/1:139,61:200:99:1175,0,1252
14    20181609    .    T    C    317.05    MQFilter40;QDFilter2    AB=0.801;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DP=191;Dels=0.0;FS=34.532;HRun=0;HaplotypeScore=0.0;MQ=16.09;MQ0=123;MQRankSum=1.016;QD=1.66;ReadPosRankSum=0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-536C10.24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556246    GT:AD:DP:GQ:PL    0/1:153,38:191:99:347,0,1050
14    20216298    rs12896533    T    C    791.21    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=80;Dels=0.0;FS=0.868;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.069;QD=9.89;ReadPosRankSum=-0.417;SNPEFF_AMINO_ACID_CHANGE=F238L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20215587_20216528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4Q3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331723    GT:AD:DP:GQ:PL    0/1:49,31:80:99:821,0,1557
14    20227924    rs7151620    A    G    210.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.154;QD=15.0;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4N2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557414    GT:AD:DP:GQ:PL    0/1:7,7:14:99:240,0,206
14    20265201    rs17276836    A    G    512.96    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.689;DB;DP=60;Dels=0.0;FS=9.766;HRun=1;HaplotypeScore=0.734;MQ=58.23;MQ0=0;MQRankSum=0.775;QD=8.55;ReadPosRankSum=0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4N2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557414    GT:AD:DP:GQ:PL    0/1:39,21:60:99:543,0,1210
14    20265265    rs12100572    T    A    1533.42    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=74;Dels=0.0;FS=0.923;HRun=1;HaplotypeScore=0.9999;MQ=59.02;MQ0=0;MQRankSum=-0.13;QD=20.72;ReadPosRankSum=-0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4N2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557414    GT:AD:DP:GQ:PL    0/1:30,44:74:99:1563,0,886
14    20265369    rs2489769    C    G    453.77    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=4.255;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=58.76;MQ0=0;MQRankSum=0.288;QD=9.86;ReadPosRankSum=2.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4N2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557414    GT:AD:DP:GQ:PL    0/1:30,16:46:99:484,0,943
14    20295627    rs72663752    C    G    801.43    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.989;DB;DP=143;Dels=0.0;FS=3.907;HRun=0;HaplotypeScore=4.6493;MQ=59.83;MQ0=0;MQRankSum=0.784;QD=5.6;ReadPosRankSum=-1.467;SNPEFF_AMINO_ACID_CHANGE=T7R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20295608_20296531;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4N2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315947    GT:AD:DP:GQ:PL    0/1:111,32:143:99:831,0,3491
14    20345346    rs12883767    A    T    268.79    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=47;Dels=0.0;FS=1.295;HRun=4;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-1.873;QD=5.72;ReadPosRankSum=-0.244;SNPEFF_AMINO_ACID_CHANGE=N307I;SNPEFF_CODON_CHANGE=aAt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20344391_20345468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298642    GT:AD:DP:GQ:PL    0/1:33,14:47:99:299,0,1097
14    20403703    rs8015196    T    C    473.15    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.762;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=12.45;ReadPosRankSum=0.329;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285600    GT:AD:DP:GQ:PL    0/1:23,15:38:99:503,0,798
14    20404091    rs12885778    G    A    1196.28    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=1.103;DB;DP=123;Dels=0.0;FS=0.746;HRun=0;HaplotypeScore=2.4892;MQ=59.62;MQ0=0;MQRankSum=1.947;QD=9.73;ReadPosRankSum=0.238;SNPEFF_AMINO_ACID_CHANGE=R89H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20403767_20404842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285600    GT:AD:DP:GQ:PL    0/1:81,41:123:99:1226,0,2481
14    20404238    rs3916626    G    A    722.26    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=1.922;DB;DP=79;Dels=0.0;FS=15.763;HRun=0;HaplotypeScore=1.5518;MQ=59.42;MQ0=0;MQRankSum=1.21;QD=9.14;ReadPosRankSum=0.334;SNPEFF_AMINO_ACID_CHANGE=R138Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20403767_20404842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285600    GT:AD:DP:GQ:PL    0/1:53,26:79:99:752,0,1547
14    20404735    rs34394400    C    T    625.43    HaplotypeScoreFilter13    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=2.02;DB;DP=61;Dels=0.0;FS=1.298;HRun=0;HaplotypeScore=16.9817;MQ=60.0;MQ0=0;MQRankSum=0.233;QD=10.25;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=R304C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20403767_20404842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285600    GT:AD:DP:GQ:PL    0/1:39,22:61:99:655,0,1139
14    20404736    rs2792146    G    A    495.81    HaplotypeScoreFilter13    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.193;DB;DP=60;Dels=0.0;FS=5.061;HRun=0;HaplotypeScore=16.9817;MQ=60.0;MQ0=0;MQRankSum=1.038;QD=8.26;ReadPosRankSum=1.302;SNPEFF_AMINO_ACID_CHANGE=R304H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20403767_20404842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285600    GT:AD:DP:GQ:PL    0/1:39,21:60:99:526,0,1339
14    20404767    rs2792145    A    G    469.60    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.256;QD=11.18;ReadPosRankSum=-0.256;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285600    GT:AD:DP:GQ:PL    0/1:25,17:42:99:500,0,870
14    20443872    rs4499148    C    G    981.02    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DB;DP=118;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=42.36;MQ0=1;MQRankSum=-1.447;QD=8.31;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=G65;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:68,50:118:99:1011,0,1771
14    20443943    rs4060024    A    G    732.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.917;DB;DP=84;Dels=0.0;FS=8.709;HRun=0;HaplotypeScore=0.8321;MQ=43.63;MQ0=1;MQRankSum=-1.355;QD=8.72;ReadPosRankSum=-2.008;SNPEFF_AMINO_ACID_CHANGE=N89S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:48,36:84:99:762,0,1326
14    20444012    rs3861512    A    T    1175.12    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.197;DB;DP=76;Dels=0.0;FS=6.011;HRun=0;HaplotypeScore=1.9846;MQ=57.06;MQ0=0;MQRankSum=2.656;QD=15.46;ReadPosRankSum=0.483;SNPEFF_AMINO_ACID_CHANGE=E112V;SNPEFF_CODON_CHANGE=gAg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:36,40:76:99:1205,0,1163
14    20444026    rs3861513    T    G    1279.82    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=78;Dels=0.0;FS=1.919;HRun=0;HaplotypeScore=1.9699;MQ=56.6;MQ0=0;MQRankSum=0.408;QD=16.41;ReadPosRankSum=-0.646;SNPEFF_AMINO_ACID_CHANGE=S117A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:32,46:78:99:1310,0,1058
14    20444193    rs2318556    A    C    1284.12    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=92;Dels=0.0;FS=4.159;HRun=1;HaplotypeScore=1.4538;MQ=58.0;MQ0=0;MQRankSum=-0.375;QD=13.96;ReadPosRankSum=-2.7;SNPEFF_AMINO_ACID_CHANGE=S172;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:44,47:92:99:1314,0,1433
14    20444441    rs10135246    C    A    1027.11    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.987;DB;DP=90;Dels=0.0;FS=5.589;HRun=2;HaplotypeScore=0.5784;MQ=58.63;MQ0=0;MQRankSum=0.203;QD=11.41;ReadPosRankSum=2.036;SNPEFF_AMINO_ACID_CHANGE=A255E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:52,38:90:99:1057,0,1763
14    20444490    rs11158071    C    T    1049.32    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.106;DB;DP=71;Dels=0.0;FS=4.817;HRun=1;HaplotypeScore=1.9581;MQ=58.58;MQ0=0;MQRankSum=2.153;QD=14.78;ReadPosRankSum=0.906;SNPEFF_AMINO_ACID_CHANGE=V271;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:33,38:71:99:1079,0,1054
14    20444588    rs2153466    T    C    854.01    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=77;Dels=0.0;FS=2.155;HRun=1;HaplotypeScore=2.6469;MQ=57.59;MQ0=0;MQRankSum=-5.408;QD=11.09;ReadPosRankSum=-0.178;SNPEFF_AMINO_ACID_CHANGE=L304P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:44,33:77:99:884,0,1305
14    20444607    rs10135467    C    G    893.80    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.195;DB;DP=65;Dels=0.0;FS=5.428;HRun=0;HaplotypeScore=0.8667;MQ=57.77;MQ0=0;MQRankSum=-4.527;QD=13.75;ReadPosRankSum=-0.895;SNPEFF_AMINO_ACID_CHANGE=I310M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20443603_20444818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305051    GT:AD:DP:GQ:PL    0/1:35,30:65:99:924,0,1015
14    20482471    rs12590785    C    T    2495.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4133;MQ=59.71;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=E294;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20482419_20483352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305045    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2528,193,0
14    20501962    rs2775261    G    C    780.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315693    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:814,60,0
14    20502120    rs17277032    C    T    727.10    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.656;DB;DP=44;Dels=0.0;FS=6.562;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.504;QD=16.53;ReadPosRankSum=-0.746;SNPEFF_AMINO_ACID_CHANGE=S266;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20502003_20502919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315693    GT:AD:DP:GQ:PL    0/1:20,24:44:99:757,0,554
14    20502921    rs2775236    G    A    106.43    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=29;Dels=0.0;FS=4.501;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.05;QD=3.67;ReadPosRankSum=-0.511;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4K13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315693    GT:AD:DP:GQ:PL    0/1:23,6:29:99:136,0,679
14    20528014    rs1959631    G    T    87.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
14    20528207    rs1958715    G    A    1311.82    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.474;DB;DP=113;Dels=0.0;FS=7.999;HRun=1;HaplotypeScore=1.4679;MQ=59.59;MQ0=0;MQRankSum=-0.148;QD=11.61;ReadPosRankSum=0.835;SNPEFF_AMINO_ACID_CHANGE=D2N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:62,51:113:99:1342,0,1993
14    20528321    rs1958716    A    G    1658.04    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.826;DB;DP=125;Dels=0.0;FS=2.306;HRun=1;HaplotypeScore=3.5264;MQ=56.98;MQ0=0;MQRankSum=0.06;QD=13.26;ReadPosRankSum=-1.156;SNPEFF_AMINO_ACID_CHANGE=M40V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:66,59:125:99:1688,0,1991
14    20528359    rs1959630    G    T    3946.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7826;MQ=57.11;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=R52S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3947,313,0
14    20528362    rs1958717    A    G    844.94    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=109;Dels=0.0;FS=5.219;HRun=0;HaplotypeScore=2.7859;MQ=57.63;MQ0=0;MQRankSum=-0.459;QD=7.75;ReadPosRankSum=1.523;SNPEFF_AMINO_ACID_CHANGE=S53;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:74,35:109:99:875,0,2356
14    20528448    rs112192573    TCATAGATTTGCTCACTGAC    T    2777.33    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=6.736;DB;DP=82;FS=23.721;HRun=0;HaplotypeScore=1294.5643;IndelType=D;MQ=53.15;MQ0=0;MQRankSum=-5.982;QD=33.87;ReadPosRankSum=1.363;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:61,21:82:99:2816,0,14385
14    20528505    rs2775253    T    A    423.69    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.977;DB;DP=72;Dels=0.0;FS=3.564;HRun=1;HaplotypeScore=2.4148;MQ=55.34;MQ0=0;MQRankSum=-4.896;QD=5.88;ReadPosRankSum=-3.673;SNPEFF_AMINO_ACID_CHANGE=M101K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:50,22:72:99:454,0,1743
14    20528528    rs2775254    G    A    376.11    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.339;DB;DP=73;Dels=0.0;FS=5.614;HRun=0;HaplotypeScore=2.9064;MQ=57.08;MQ0=0;MQRankSum=-2.231;QD=5.15;ReadPosRankSum=-1.17;SNPEFF_AMINO_ACID_CHANGE=G109S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:52,21:73:99:406,0,1624
14    20529019    rs1959629    C    T    1028.14    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=3.627;DB;DP=79;Dels=0.0;FS=3.112;HRun=0;HaplotypeScore=3.4519;MQ=59.71;MQ0=0;MQRankSum=0.143;QD=13.01;ReadPosRankSum=-1.623;SNPEFF_AMINO_ACID_CHANGE=A272;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:44,35:79:99:1058,0,1239
14    20529043    rs1959628    C    G    591.64    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.455;DB;DP=64;Dels=0.0;FS=2.195;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.7;QD=9.24;ReadPosRankSum=-0.196;SNPEFF_AMINO_ACID_CHANGE=P280;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20528204_20529142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:41,23:64:99:622,0,1180
14    20529177    rs1959627    C    T    247.34    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=4.096;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=9.51;ReadPosRankSum=0.431;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315683    GT:AD:DP:GQ:PL    0/1:17,9:26:99:277,0,528
14    20641690    rs9285595    C    T    203.49    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=2.246;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.905;QD=12.72;ReadPosRankSum=-0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-98N22.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554443    GT:AD:DP:GQ:PL    0/1:9,7:16:99:233,0,313
14    20641707    rs9323621    T    A    192.05    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.048;QD=11.3;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-98N22.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554443    GT:AD:DP:GQ:PL    0/1:8,9:17:99:222,0,280
14    20641788    rs9323622    A    T    713.50    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.566;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.926;QD=15.18;ReadPosRankSum=-0.243;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-98N22.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554443    GT:AD:DP:GQ:PL    0/1:22,25:47:99:743,0,671
14    20642034    rs7143334    A    T    376.45    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.892;DB;DP=30;Dels=0.0;FS=7.464;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.339;QD=12.55;ReadPosRankSum=0.837;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-98N22.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554443    GT:AD:DP:GQ:PL    0/1:17,13:30:99:406,0,521
14    20665790    rs4981822    T    A    2073.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=I99N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20665495_20666605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11G2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357366    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2107,159,0
14    20665840    rs4981088    G    A    1417.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.29;SNPEFF_AMINO_ACID_CHANGE=V116I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20665495_20666605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11G2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357366    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1450,111,0
14    20665887    rs4981823    G    C    1356.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=38.77;SNPEFF_AMINO_ACID_CHANGE=S131;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20665495_20666605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11G2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357366    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1390,102,0
14    20666175    rs77577169    C    CA    2595.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.0;HRun=6;HaplotypeScore=190.1172;IndelType=I;MQ=60.4;MQ0=0;QD=33.71;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_14_20665495_20666605;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11G2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000357366    GT:AD:DP:GQ:PL    1/1:5,72:77:99:2638,211,0
14    20666556    rs2318886    C    T    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=34.39;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357366    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3267,244,0
14    20666623    rs2318887    T    C    1367.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357366    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1400,108,0
14    20692188    rs12891553    T    C    1043.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.641;QD=15.81;ReadPosRankSum=0.551;SNPEFF_AMINO_ACID_CHANGE=I107T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20691791_20692964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315519    GT:AD:DP:GQ:PL    0/1:33,33:66:99:1073,0,979
14    20692291    rs34693535    C    T    1008.52    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=82;Dels=0.0;FS=3.176;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.128;QD=12.3;ReadPosRankSum=-0.564;SNPEFF_AMINO_ACID_CHANGE=Y141;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20691791_20692964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11H6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315519    GT:AD:DP:GQ:PL    0/1:44,38:82:99:1039,0,1207
14    20692453    rs17211285    G    T    325.30    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=58.71;MQ0=0;MQRankSum=-0.887;QD=18.07;ReadPosRankSum=-1.577;SNPEFF_AMINO_ACID_CHANGE=L195F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20691791_20692964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315519    GT:AD:DP:GQ:PL    0/1:5,13:18:99:355,0,148
14    20692574    rs17277221    T    C    633.60    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.33;DB;DP=34;Dels=0.0;FS=3.037;HRun=0;HaplotypeScore=0.7887;MQ=58.07;MQ0=0;MQRankSum=-1.912;QD=18.64;ReadPosRankSum=0.455;SNPEFF_AMINO_ACID_CHANGE=Y236H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20691791_20692964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315519    GT:AD:DP:GQ:PL    0/1:14,20:34:99:664,0,383
14    20692643    rs17277228    T    C    695.16    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=59.57;MQ0=0;MQRankSum=-0.584;QD=16.17;ReadPosRankSum=1.105;SNPEFF_AMINO_ACID_CHANGE=C259R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20691791_20692964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11H6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315519    GT:AD:DP:GQ:PL    0/1:17,26:43:99:725,0,511
14    20692999    rs11851950    T    G    100.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=8.36;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11H6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315519    GT:AD:DP:GQ:PL    0/1:8,4:12:99:130,0,296
14    20697600    rs12434822    T    G    1092.66    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.167;DB;DP=66;Dels=0.0;FS=19.001;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.128;QD=16.56;ReadPosRankSum=-0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR11H6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315519    GT:AD:DP:GQ:PL    0/1:31,35:66:99:1123,0,979
14    20698068    rs4981844    G    T    1000.89    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.472;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=59.41;MQ0=0;MQRankSum=-0.021;QD=12.83;ReadPosRankSum=0.052;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=OR11H7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553765    GT:AD:DP:GQ:PL    0/1:44,34:78:99:1031,0,1466
14    20698239    rs1953558    T    C    986.04    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.021;DB;DP=68;Dels=0.0;FS=7.537;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-1.161;QD=14.5;ReadPosRankSum=0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=OR11H7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553765    GT:AD:DP:GQ:PL    0/1:36,32:68:99:1016,0,1172
14    20698298    rs1953559    T    G    433.47    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=36;Dels=0.0;FS=1.958;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.557;QD=12.04;ReadPosRankSum=-1.003;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=OR11H7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553765    GT:AD:DP:GQ:PL    0/1:20,16:36:99:463,0,646
14    20763446    rs1953551    T    C    154.84    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.256;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.48;QD=6.73;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258821    GT:AD:DP:GQ:PL    0/1:15,7:23:99:185,0,450
14    20767618    rs2318864    G    A    540.98    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=52;Dels=0.0;FS=4.281;HRun=2;HaplotypeScore=1.8519;MQ=59.11;MQ0=0;MQRankSum=0.531;QD=10.4;ReadPosRankSum=0.338;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553828    GT:AD:DP:GQ:PL    0/1:31,21:52:99:571,0,899
14    20767706    rs945459    C    T    39.81    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.942;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.942;QD=2.34;ReadPosRankSum=-0.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553828    GT:AD:DP:GQ:PL    0/1:13,4:17:69.80:70,0,441
14    20769870    rs3825766    G    A    198    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.117;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=12.37;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258821    GT:AD:DP:GQ:PL    0/1:9,7:16:99:228,0,309
14    20770036    rs3742945    T    C    412.39    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.626;DB;DP=54;Dels=0.0;FS=2.61;HRun=1;HaplotypeScore=1.5762;MQ=60.0;MQ0=0;MQRankSum=0.41;QD=7.64;ReadPosRankSum=1.639;SNPEFF_AMINO_ACID_CHANGE=Q47R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20769992_20770124;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258821    GT:AD:DP:GQ:PL    0/1:37,17:54:99:442,0,1209
14    20784718    rs1132644    G    T    963.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.07;SNPEFF_AMINO_ACID_CHANGE=P20T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20784573_20784719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNB1IP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556563    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:997,75,0
14    20794509    rs884368    A    G    161.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.17;ReadPosRankSum=-2.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNB1IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353689    GT:AD:DP:GQ:PL    0/1:4,6:10:99:192,0,135
14    20812951    rs3093888    G    A    182.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=20.23;ReadPosRankSum=2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250416    GT:AD:DP:GQ:PL    0/1:3,6:9:79.10:212,0,79
14    20813289    rs2297616    G    A    716.46    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.477;QD=19.9;ReadPosRankSum=1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250416    GT:AD:DP:GQ:PL    0/1:10,26:36:99:746,0,284
14    20813672    rs3093890    A    G    172.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.766;DB;DP=15;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=11.49;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250416    GT:AD:DP:GQ:PL    0/1:9,6:15:99:202,0,282
14    20815013    rs1713430    C    T    599.34    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.443;DB;DP=51;Dels=0.0;FS=3.959;HRun=0;HaplotypeScore=0.0;MQ=57.7;MQ0=0;MQRankSum=-0.462;QD=11.75;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250416    GT:AD:DP:GQ:PL    0/1:27,24:51:99:629,0,749
14    20818602    rs3093902    C    G    80.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=6.74;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250416    GT:AD:DP:GQ:PL    0/1:8,4:12:99:111,0,289
14    20819112    rs3093904    T    A    276.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=18.45;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250416    GT:AD:DP:GQ:PL    0/1:5,10:15:99:307,0,162
14    20820537    rs1760919    A    G    403.62    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=3.248;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.893;QD=12.23;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250416    GT:AD:DP:GQ:PL    0/1:19,14:33:99:434,0,563
14    20822115    rs1713413    C    G    38.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.77;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250416    GT:AD:DP:GQ:PL    0/1:3,2:5:68.83:69,0,113
14    20824181    rs3093930    T    C    864.03    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.884;DB;DP=79;Dels=0.0;FS=3.041;HRun=0;HaplotypeScore=0.8941;MQ=59.12;MQ0=0;MQRankSum=-0.315;QD=10.94;ReadPosRankSum=-1.105;SNPEFF_AMINO_ACID_CHANGE=Y364;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20824056_20824190;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429687    GT:AD:DP:GQ:PL    0/1:41,38:79:99:894,0,1273
14    20824415    rs3093933    G    T    1519.38    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=82;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=1.203;QD=18.53;ReadPosRankSum=-0.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527384    GT:AD:DP:GQ:PL    0/1:32,50:82:99:1549,0,955
14    20825321    rs10625811    T    TTTCAC    777.29    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;FS=4.964;HRun=0;HaplotypeScore=134.1247;IndelType=I;MQ=48.56;MQ0=0;MQRankSum=-3.799;QD=38.86;ReadPosRankSum=1.899;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527384    GT:AD:DP:GQ:PL    0/1:11,9:20:99:816,0,695
14    20825362    rs3093939    G    A    203.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.23;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.33;MQ0=0;MQRankSum=-1.776;QD=10.18;ReadPosRankSum=0.794;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527384    GT:AD:DP:GQ:PL    0/1:10,10:20:99:233,0,368
14    20825965    rs2700    A    C    445.79    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=38;Dels=0.0;FS=5.301;HRun=0;HaplotypeScore=0.5784;MQ=59.51;MQ0=0;MQRankSum=0.107;QD=11.73;ReadPosRankSum=-0.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527384    GT:AD:DP:GQ:PL    0/1:22,16:38:99:476,0,685
14    20836923    rs10677311    GCA    G    71.66    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=15;FS=2.808;HRun=0;HaplotypeScore=68.8873;IndelType=D;MQ=59.18;MQ0=0;MQRankSum=1.447;QD=4.78;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545983    GT:AD:DP:GQ:PL    0/1:10,5:15:99:111,0,169
14    20837701    rs938886    G    C    632.46    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.841;DB;DP=47;Dels=0.0;FS=6.369;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.117;QD=13.46;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=I2378M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20837503_20837735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556935    GT:AD:DP:GQ:PL    0/1:23,24:47:99:662,0,787
14    20841162    rs1760909    C    T    712.25    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=52;Dels=0.0;FS=2.471;HRun=0;HaplotypeScore=3.6991;MQ=56.35;MQ0=0;MQRankSum=0.236;QD=13.7;ReadPosRankSum=-0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556488    GT:AD:DP:GQ:PL    0/1:25,27:52:99:742,0,699
14    20841313    rs1713448    G    A    908.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.661;DB;DP=50;Dels=0.0;FS=4.263;HRun=1;HaplotypeScore=0.734;MQ=59.54;MQ0=0;MQRankSum=0.376;QD=18.17;ReadPosRankSum=-0.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556488    GT:AD:DP:GQ:PL    0/1:20,30:50:99:938,0,620
14    20841707    rs1713449    C    T    443.98    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.379;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4875;MQ=59.46;MQ0=0;MQRankSum=1.162;QD=10.33;ReadPosRankSum=2.067;SNPEFF_AMINO_ACID_CHANGE=V2106I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20841666_20841742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556935    GT:AD:DP:GQ:PL    0/1:24,19:43:99:474,0,668
14    20843889    rs1760908    G    A    122.63    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=17;Dels=0.0;FS=5.528;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.318;QD=7.21;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    0/1:12,5:17:99:153,0,367
14    20847202    rs938887    A    G    912.08    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=80;Dels=0.0;FS=0.856;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=2.602;QD=11.4;ReadPosRankSum=-1.101;SNPEFF_AMINO_ACID_CHANGE=D1622;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20847140_20847264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556935    GT:AD:DP:GQ:PL    0/1:43,37:80:99:942,0,1251
14    20848963    rs1108613    C    T    323.84    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.514;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=15.42;ReadPosRankSum=1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    0/1:10,11:21:99:354,0,350
14    20850014    rs1713455    G    A    501.92    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=2.462;DB;DP=31;Dels=0.0;FS=1.446;HRun=0;HaplotypeScore=0.9958;MQ=58.5;MQ0=0;MQRankSum=-0.34;QD=16.19;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    0/1:13,18:31:99:532,0,391
14    20850093    rs1713456    C    T    279.07    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.207;DB;DP=38;Dels=0.0;FS=3.326;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.782;QD=7.34;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=C1360Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20850072_20850222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556935    GT:AD:DP:GQ:PL    0/1:24,14:38:99:309,0,611
14    20851839    rs112044157    GA    G    186.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.532;DB;DP=14;FS=0.0;HRun=9;HaplotypeScore=59.039;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=0.825;QD=13.29;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    1/1:5,9:14:12.21:228,12,0
14    20852029    rs1760904    A    G    502.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=S1087P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20851902_20852077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556935    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:535,42,0
14    20852770    rs1713458    G    T    2285.34    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.018;DB;DP=175;Dels=0.0;FS=1.227;HRun=1;HaplotypeScore=5.3147;MQ=59.58;MQ0=0;MQRankSum=1.157;QD=13.06;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=I1070;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20852759_20852872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    0/1:87,86:175:99:2315,0,2480
14    20852817    rs1760903    G    A    5282.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.66;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=R1055C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20852759_20852872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    1/1:0,150:150:99:5283,391,0
14    20854734    rs945011    A    G    902.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_AMINO_ACID_CHANGE=H803;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20854606_20854782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556935    GT:AD:DP:GQ:PL    1/1:0,26:26:72.20:936,72,0
14    20859013    rs872072    G    A    537.28    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=28;Dels=0.0;FS=6.029;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.376;QD=19.19;ReadPosRankSum=-2.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    0/1:11,17:28:99:567,0,369
14    20860073    rs1713423    G    A    167.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
14    20863677    rs2228036    C    A    2134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=R512;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20863609_20863786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556935    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2167,163,0
14    20869819    rs2297612    A    T    1664.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.624;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7886;MQ=60.0;MQ0=0;MQRankSum=0.069;QD=32.64;ReadPosRankSum=-0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    1/1:1,50:51:90.19:1697,90,0
14    20871645    rs8009925    C    A    1848.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556549    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1881,138,0
14    20871846    rs55790286    A    G    191.83    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.55;MQ0=0;MQRankSum=0.068;QD=11.99;ReadPosRankSum=1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556549    GT:AD:DP:GQ:PL    0/1:7,9:16:99:222,0,248
14    20871973    rs2228035    T    C    639.46    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=1.224;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=11.22;ReadPosRankSum=0.959;SNPEFF_AMINO_ACID_CHANGE=K368R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20871882_20872043;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    0/1:33,23:57:99:669,0,871
14    20873524    rs3762146    A    G    2052.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.632;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.1924;MQ=58.69;MQ0=0;MQRankSum=0.226;QD=28.91;ReadPosRankSum=-0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556549    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2086,129,0
14    20875750    rs1713439    T    C    80.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=26.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556549    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
14    20876253    rs1760897    A    G    2743.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.899;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6643;MQ=59.76;MQ0=0;MQRankSum=-0.504;QD=34.72;ReadPosRankSum=-0.504;SNPEFF_AMINO_ACID_CHANGE=S116P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20876032_20876622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262715    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2776,174,0
14    20896828    rs7154662    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344581    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
14    20897064    rs7145318    C    T    716.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=A516T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20896970_20897560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344581    GT:AD:DP:GQ:PL    1/1:0,21:22:54.18:750,54,0
14    20897676    rs1953225    T    C    1250.02    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=85;Dels=0.0;FS=2.966;HRun=1;HaplotypeScore=1.786;MQ=60.0;MQ0=0;MQRankSum=0.032;QD=14.71;ReadPosRankSum=0.724;SNPEFF_AMINO_ACID_CHANGE=E345G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20897661_20897828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344581    GT:AD:DP:GQ:PL    0/1:43,42:85:99:1280,0,1212
14    20898442    rs11160645    C    T    129.06    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=18.44;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=Q131;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20897954_20898878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344581    GT:AD:DP:GQ:PL    0/1:2,5:7:61.61:159,0,62
14    20898917    rs4982086    A    G    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344581    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
14    20916958    rs938883    T    C    686.23    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.413;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.095;QD=11.63;ReadPosRankSum=0.032;SNPEFF_AMINO_ACID_CHANGE=L190;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20916892_20916970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000206542    GT:AD:DP:GQ:PL    0/1:35,24:59:99:716,0,981
14    20917442    rs938881    A    T    308.38    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=33;Dels=0.0;FS=1.763;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.688;QD=9.34;ReadPosRankSum=0.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488532    GT:AD:DP:GQ:PL    0/1:19,13:33:99:338,0,666
14    20920043    rs1320150    C    T    242.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=14;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.35;ReadPosRankSum=1.468;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556252    GT:AD:DP:GQ:PL    0/1:6,8:14:99:273,0,173
14    20920250    rs2275007    T    C    589.46    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=34;Dels=0.0;FS=3.506;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.554;QD=17.34;ReadPosRankSum=0.592;SNPEFF_AMINO_ACID_CHANGE=Q98;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_20920133_20920308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000206542    GT:AD:DP:GQ:PL    0/1:11,23:34:99:619,0,279
14    20920340    rs2275006    A    G    656.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.326;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.698;QD=23.45;ReadPosRankSum=-0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206542    GT:AD:DP:GQ:PL    0/1:7,21:28:99:687,0,197
14    20920360    rs3215948    A    AG    809.58    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=3.214;DB;DP=33;FS=1.67;HRun=1;HaplotypeScore=144.8674;IndelType=I;MQ=59.3;MQ0=0;MQRankSum=1.825;QD=24.53;ReadPosRankSum=1.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206542    GT:AD:DP:GQ:PL    0/1:12,21:33:99:849,0,332
14    20920749    rs1878703    C    G    46.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.54;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206542    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:77,0,31
14    20978444    rs2319197    A    G    270.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430083    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:303,24,0
14    20978531    rs2319198    G    A    759    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430083    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:792,60,0
14    21024605    rs8014474    G    A    965.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338904    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:998,72,0
14    21024619    rs1243647    A    G    988.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_AMINO_ACID_CHANGE=S204P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21024252_21025242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338904    GT:AD:DP:GQ:PL    1/1:0,31:31:75.22:1022,75,0
14    21024786    rs12590446    A    G    1050.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7256;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=F148S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21024252_21025242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338904    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1083,81,0
14    21058337    rs4981259    C    T    376.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.71;MQ0=0;QD=20.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL163195.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556526    GT:AD:DP:GQ:PL    1/1:0,17:18:36.08:409,36,0
14    21058683    rs117757779    A    C    857.74    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.499;DB;DP=62;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.085;QD=13.83;ReadPosRankSum=1.931;SNPEFF_AMINO_ACID_CHANGE=V67G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21058352_21058982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL163195.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556526    GT:AD:DP:GQ:PL    0/1:35,27:62:99:888,0,1048
14    21108748    rs11621507    G    A    42.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-0.727;QD=10.51;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    1/1:1,3:4:8.99:74,9,0
14    21108749    rs11621774    C    T    32.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=8.02;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    0/1:1,3:4:24.13:62,0,24
14    21108786    .    T    TTC    430.16    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DP=21;FS=0.0;HRun=0;HaplotypeScore=147.2156;IndelType=I;MQ=32.82;MQ0=0;MQRankSum=1.091;QD=20.48;ReadPosRankSum=1.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    0/1:15,5:21:99:469,0,298
14    21109141    rs17277522    C    T    1249.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.859;DB;DP=78;Dels=0.0;FS=3.097;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.999;QD=16.02;ReadPosRankSum=-0.879;SNPEFF_AMINO_ACID_CHANGE=R237H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21108855_21109850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    0/1:39,39:78:99:1279,0,1104
14    21109170    rs11628297    T    A    2555.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=A227;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21108855_21109850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2589,193,0
14    21109278    rs11627438    A    T    621.25    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.673;DB;DP=46;Dels=0.0;FS=7.274;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.742;QD=13.51;ReadPosRankSum=1.23;SNPEFF_AMINO_ACID_CHANGE=A191;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21108855_21109850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    0/1:26,20:46:99:651,0,793
14    21109385    rs11622969    C    T    432.54    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=29;Dels=0.0;FS=1.449;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.329;QD=14.92;ReadPosRankSum=1.206;SNPEFF_AMINO_ACID_CHANGE=V156I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21108855_21109850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    0/1:13,16:29:99:463,0,362
14    21109671    rs11627574    A    G    780.75    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.874;DB;DP=61;Dels=0.0;FS=2.235;HRun=4;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.022;QD=12.8;ReadPosRankSum=-0.599;SNPEFF_AMINO_ACID_CHANGE=P60;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21108855_21109850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    0/1:32,29:61:99:811,0,1059
14    21109726    rs11622794    G    A    787.07    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.008;DB;DP=85;Dels=0.0;FS=0.922;HRun=0;HaplotypeScore=3.1942;MQ=59.18;MQ0=0;MQRankSum=-2.171;QD=9.26;ReadPosRankSum=1.061;SNPEFF_AMINO_ACID_CHANGE=T42I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21108855_21109850;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    0/1:52,33:85:99:817,0,1775
14    21109859    rs11156622    T    C    617.57    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.084;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.42;MQ0=0;MQRankSum=0.296;QD=7.82;ReadPosRankSum=-1.039;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320704    GT:AD:DP:GQ:PL    0/1:50,29:79:99:648,0,1500
14    21161931    rs121909541    A    G    883.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.92;DB;DP=64;Dels=0.0;FS=0.954;HRun=0;HaplotypeScore=2.4449;MQ=59.64;MQ0=0;MQRankSum=0.302;QD=13.8;ReadPosRankSum=-0.906;SNPEFF_AMINO_ACID_CHANGE=I70V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21161706_21162345;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336811    GT:AD:DP:GQ:PL    0/1:32,32:64:99:913,0,970
14    21168055    rs3094    T    C    286.57    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.79;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=11.94;ReadPosRankSum=0.673;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554073    GT:AD:DP:GQ:PL    0/1:14,10:24:99:317,0,508
14    21168084    rs11541061    C    T    267.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.532;DB;DP=18;Dels=0.0;FS=3.854;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.733;QD=14.84;ReadPosRankSum=-1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554073    GT:AD:DP:GQ:PL    0/1:8,10:18:99:297,0,229
14    21215600    rs17211691    A    G    105.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.65;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDDM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326842    GT:AD:DP:GQ:PL    0/1:2,4:6:63.23:136,0,63
14    21215692    rs10136680    C    T    794.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDDM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326842    GT:AD:DP:GQ:PL    1/1:0,23:23:66.18:827,66,0
14    21215728    rs10135976    G    C    1234.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_21215714_21216539;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDDM3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326842    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1267,93,0
14    21215997    rs11847654    C    T    666.16    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=1.817;DB;DP=43;Dels=0.0;FS=7.713;HRun=0;HaplotypeScore=1.7005;MQ=59.03;MQ0=0;MQRankSum=0.064;QD=15.49;ReadPosRankSum=-0.674;SNPEFF_AMINO_ACID_CHANGE=S86;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21215714_21216539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDDM3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326842    GT:AD:DP:GQ:PL    0/1:18,25:43:99:696,0,475
14    21238318    rs3827905    G    A    868.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_AMINO_ACID_CHANGE=S3;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21238292_21239107;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDDM3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326783    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:902,66,0
14    21238798    rs3827907    T    C    204.56    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.38;QD=17.05;ReadPosRankSum=0.135;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDDM3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326783    GT:AD:DP:GQ:PL    0/1:5,7:12:99:235,0,172
14    21250366    rs7156801    T    C    1233.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304677    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1266,108,0
14    21359808    rs2233859    C    A    813.32    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.004;DB;DP=92;Dels=0.0;FS=0.914;HRun=0;HaplotypeScore=4.0068;MQ=59.8;MQ0=0;MQRankSum=-0.004;QD=8.84;ReadPosRankSum=0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304639    GT:AD:DP:GQ:PL    0/1:57,35:92:99:843,0,1684
14    21360216    rs2073342    C    G    1712.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=35.69;SNPEFF_AMINO_ACID_CHANGE=T124R;SNPEFF_CODON_CHANGE=aCg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21359841_21360507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304639    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1746,129,0
14    21387994    rs10459477    A    G    3980.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1101;MQ=59.06;MQ0=0;QD=32.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-219E7.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553534    GT:AD:DP:GQ:PL    1/1:0,124:124:99:3980,328,0
14    21388266    rs3748340    G    C    3729.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.77;MQ0=0;QD=33.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-219E7.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553534    GT:AD:DP:GQ:PL    1/1:0,111:112:99:3729,274,0
14    21388302    rs3748341    G    A    3344.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3893;MQ=59.51;MQ0=0;QD=33.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-219E7.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553534    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3344,244,0
14    21388431    rs61977374    A    T    192.19    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.916;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.141;QD=7.69;ReadPosRankSum=0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-84C10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258817    GT:AD:DP:GQ:PL    0/1:16,9:25:99:222,0,532
14    21458131    rs2741733    G    A    1182.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.56;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382985    GT:AD:DP:GQ:PL    1/1:0,40:40:93.27:1215,93,0
14    21458320    rs3215962    CCCCG    C    2847.85    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=9.339;DB;DP=160;FS=0.646;HRun=0;HaplotypeScore=763.0743;IndelType=D;MQ=58.27;MQ0=0;MQRankSum=0.217;QD=17.8;ReadPosRankSum=-2.001;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_14_21458139_21458542;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000536700    GT:AD:DP:GQ:PL    0/1:97,63:160:99:2887,0,6579
14    21460160    rs2741737    C    T    301.77    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=15.88;ReadPosRankSum=2.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556442    GT:AD:DP:GQ:PL    0/1:9,10:19:99:332,0,305
14    21460902    rs2741738    T    C    108.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.55;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554283    GT:AD:DP:GQ:PL    0/1:3,4:7:99:139,0,103
14    21461090    rs2771347    C    G    35.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.9;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554283    GT:AD:DP:GQ:PL    0/1:4,2:6:65.40:65,0,151
14    21461502    rs2783779    A    G    241.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=20.16;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553441    GT:AD:DP:GQ:PL    0/1:4,8:12:99:272,0,129
14    21463430    rs2741739    G    T    2969.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536700    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3003,223,0
14    21463474    rs2783801    G    A    1663.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536700    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1696,123,0
14    21463602    rs2771349    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536700    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    21467913    rs2234632    T    G    1011.46    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.037;DB;DP=72;Dels=0.0;FS=6.522;HRun=0;HaplotypeScore=3.6145;MQ=59.68;MQ0=0;MQRankSum=-0.079;QD=14.05;ReadPosRankSum=0.214;SNPEFF_AMINO_ACID_CHANGE=L43R;SNPEFF_CODON_CHANGE=cTa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21467901_21468031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298681    GT:AD:DP:GQ:PL    0/1:37,35:72:99:1041,0,1155
14    21468156    rs2149666    T    G    160.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.71;DB;DP=16;Dels=0.0;FS=2.027;HRun=1;HaplotypeScore=0.734;MQ=58.55;MQ0=0;MQRankSum=0.194;QD=10.0;ReadPosRankSum=0.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339374    GT:AD:DP:GQ:PL    0/1:8,8:16:99:190,0,287
14    21468818    rs12878211    A    G    183.61    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=47.12;MQ0=0;MQRankSum=-0.747;QD=22.95;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339374    GT:AD:DP:GQ:PL    0/1:1,7:8:17.70:214,0,18
14    21468955    rs12886630    T    C    1500.73    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6442;MQ=59.52;MQ0=0;MQRankSum=0.441;QD=17.25;ReadPosRankSum=-0.623;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339374    GT:AD:DP:GQ:PL    0/1:42,45:87:99:1531,0,1392
14    21469151    rs2234636    T    C    3036.09    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.06;DB;DP=190;DS;Dels=0.0;FS=0.689;HRun=0;HaplotypeScore=2.4714;MQ=59.88;MQ0=0;MQRankSum=-1.417;QD=15.98;ReadPosRankSum=1.141;SNPEFF_AMINO_ACID_CHANGE=F115L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21469106_21470030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298681    GT:AD:DP:GQ:PL    0/1:81,109:190:99:3066,0,2482
14    21486054    rs74784175    T    C    1077.42    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=61;Dels=0.0;FS=2.094;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=17.66;ReadPosRankSum=-1.889;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366204    GT:AD:DP:GQ:PL    0/1:28,33:61:99:1107,0,905
14    21486137    rs1243445    G    C    4544.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366204    GT:AD:DP:GQ:PL    1/1:1,133:135:99:4544,349,0
14    21486442    rs1243446    A    G    108.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.378;QD=9.03;ReadPosRankSum=-0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366204    GT:AD:DP:GQ:PL    0/1:6,6:12:99:138,0,219
14    21487364    rs45529231    A    G    547.45    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=32;Dels=0.0;FS=6.789;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.171;QD=17.11;ReadPosRankSum=-0.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366204    GT:AD:DP:GQ:PL    0/1:15,17:32:99:577,0,482
14    21488046    rs1243448    G    C    832.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366204    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:865,66,0
14    21489044    rs34056586    G    A    460.75    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.157;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=15.36;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553563    GT:AD:DP:GQ:PL    0/1:11,19:30:99:491,0,311
14    21490125    rs1243449    A    C    806.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554415    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:840,63,0
14    21499054    rs1243459    G    A    438.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382951    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:472,36,0
14    21499072    rs2282035    T    C    590.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382951    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:624,48,0
14    21499884    rs1243461    A    G    71.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
14    21500395    rs1243462    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    21500411    rs3818613    C    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
14    21511458    rs1263872    G    C    3565.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9713;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_AMINO_ACID_CHANGE=A103P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21511112_21512392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298690    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3566,295,0
14    21511497    rs1243469    C    T    4315.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9575;MQ=59.83;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=H116Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21511112_21512392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298690    GT:AD:DP:GQ:PL    1/1:0,134:135:99:4315,334,0
14    21526044    rs12435011    T    C    334.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403829    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:368,27,0
14    21526079    rs12437266    C    T    343.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.46;SNPEFF_AMINO_ACID_CHANGE=P10S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21525981_21526614;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308227    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:377,30,0
14    21526690    rs4246989    A    G    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=18.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308227    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
14    21542037    rs4982405    C    T    876.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298693    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:909,69,0
14    21544056    rs7140850    C    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555038    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
14    21544842    rs67558375    T    TG    2903.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=4;HaplotypeScore=205.8035;IndelType=I;MQ=60.1;MQ0=0;QD=37.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555038    GT:AD:DP:GQ:PL    1/1:6,72:78:99:2946,217,0
14    21549893    rs7143633    G    C    203.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_AMINO_ACID_CHANGE=V956L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21549668_21550278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298693    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
14    21551058    rs1958395    G    A    1822.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.62;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=A1185;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21550990_21551076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298693    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1856,141,0
14    21551069    rs1958396    T    C    1728.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=L1189S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21550990_21551076;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298693    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1761,129,0
14    21555087    rs71888411    AAATC    A    253.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=58.5689;IndelType=D;MQ=40.19;MQ0=0;QD=36.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553670    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:295,18,0
14    21556963    rs71417002    A    AT    1357.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=2;HaplotypeScore=74.3918;IndelType=I;MQ=61.74;MQ0=0;QD=37.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555232    GT:AD:DP:GQ:PL    1/1:3,33:36:99:1399,99,0
14    21623010    rs8007993    T    C    897.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;QD=37.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304418    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:930,69,0
14    21623290    rs7145814    T    C    1019.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=I299V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21623026_21624222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AU1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304418    GT:AD:DP:GQ:PL    1/1:0,29:29:84.22:1053,84,0
14    21623648    rs7161544    G    A    638.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_AMINO_ACID_CHANGE=N179;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21623026_21624222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AU1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304418    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:672,51,0
14    21623836    rs4982419    G    A    970.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_AMINO_ACID_CHANGE=L117F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21623026_21624222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AU1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304418    GT:AD:DP:GQ:PL    1/1:0,31:31:81.17:1003,81,0
14    21624197    rs10135366    T    C    3960.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=32.73;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_21623026_21624222;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR5AU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304418    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3961,307,0
14    21699069    rs8016099    A    C    1218.44    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.431;DB;DP=83;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.194;QD=14.68;ReadPosRankSum=1.223;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557336    GT:AD:DP:GQ:PL    0/1:41,42:83:99:1248,0,1284
14    21702445    rs77383205    TA    T    253.39    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.303;DB;DP=33;FS=0.0;HRun=4;HaplotypeScore=79.4372;IndelType=D;MQ=58.04;MQ0=0;MQRankSum=0.554;QD=7.68;ReadPosRankSum=0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216296    GT:AD:DP:GQ:PL    0/1:22,11:33:99:292,0,816
14    21770730    rs6571751    A    G    1015.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=56.78;MQ0=0;QD=23.09;SNPEFF_AMINO_ACID_CHANGE=K192E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21770647_21770743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000206660    GT:AD:DP:GQ:PL    1/1:2,42:44:78.26:1049,78,0
14    21771335    rs7140589    C    T    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.19;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554750    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:63,0,71
14    21771866    rs7140235    G    T    37.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.42;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554750    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:67,0,32
14    21775816    rs8005773    G    C    726.15    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.486;DB;DP=42;Dels=0.0;FS=3.053;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.25;QD=17.29;ReadPosRankSum=-0.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554750    GT:AD:DP:GQ:PL    0/1:19,23:42:99:756,0,591
14    21778792    rs1957414    T    C    209.49    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.9578;MQ=56.43;MQ0=0;MQRankSum=-1.106;QD=17.46;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206660    GT:AD:DP:GQ:PL    0/1:3,9:12:55.49:239,0,55
14    21780245    rs61977482    G    A    291.79    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.01;QD=17.16;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206660    GT:AD:DP:GQ:PL    0/1:8,9:17:99:322,0,238
14    21780316    rs8021536    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
14    21789828    rs3748359    C    T    66.27    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=8.28;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557351    GT:AD:DP:GQ:PL    0/1:5,3:8:96.27:96,0,170
14    21792811    rs9322965    G    A    1127.06    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.79;MQ0=0;MQRankSum=2.049;QD=10.15;ReadPosRankSum=0.459;SNPEFF_AMINO_ACID_CHANGE=R8H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21792789_21792884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307974    GT:AD:DP:GQ:PL    0/1:70,41:111:99:1157,0,1829
14    21793236    rs7157052    G    A    1216.51    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.558;DB;DP=106;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;MQRankSum=-0.761;QD=11.48;ReadPosRankSum=0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554303    GT:AD:DP:GQ:PL    0/1:61,45:106:99:1247,0,1865
14    21796784    rs3748361    G    C    2194.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_AMINO_ACID_CHANGE=E1033Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21796583_21796786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000206660    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2228,163,0
14    21821821    rs3736824    A    C    2367.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.48;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206660    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2401,184,0
14    21826718    rs3762157    T    G    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538230    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
14    21828520    rs927412    T    A    300.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538230    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:333,24,0
14    21829129    rs3762158    C    G    1720.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7997;MQ=59.56;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=G644;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21829005_21829131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216297    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1753,132,0
14    21829404    rs1543494    T    C    1160.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=29.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538230    GT:AD:DP:GQ:PL    1/1:1,37:39:96.30:1193,96,0
14    21830635    rs1983768    C    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216297    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
14    21831052    rs10138699    T    C    4215.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4987;MQ=59.63;MQ0=0;QD=37.31;SNPEFF_AMINO_ACID_CHANGE=P522;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21830953_21831106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216297    GT:AD:DP:GQ:PL    1/1:0,113:113:99:4216,328,0
14    21831112    rs10146717    G    A    4933.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216297    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4933,373,0
14    21831692    rs10139379    T    A    1472.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216297    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1506,114,0
14    21833147    rs2295866    G    A    588.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556217    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:621,48,0
14    21836400    rs8008670    T    C    1390.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=30.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555752    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1423,111,0
14    21837240    rs8009789    A    G    550.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555752    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:584,45,0
14    21838160    rs2181125    A    G    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=17.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555752    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:119,9,0
14    21838781    rs4982445    C    T    236.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555752    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:270,21,0
14    21838846    rs4982446    T    C    85.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT16H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555752    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
14    21859536    rs3762159    T    C    375.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555301    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:408,30,0
14    21860360    rs1998332    G    A    1859.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555301    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1892,138,0
14    21861133    rs71875399    G    GA    269.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DB;DP=20;FS=0.0;HRun=15;HaplotypeScore=92.3259;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=0.116;QD=13.49;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555301    GT:AD:DP:GQ:PL    1/1:6,11:20:26.62:312,27,0
14    21861211    rs7152833    C    A    803.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=32.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555301    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:836,63,0
14    21863716    rs1952554    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262707    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    21864124    rs10134108    C    A    1967.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262707    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2001,153,0
14    21865259    rs10151764    T    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262707    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    21869705    rs113076568    C    CT    1638.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.85;DB;DP=62;FS=0.0;HRun=10;HaplotypeScore=162.0864;IndelType=I;MQ=59.41;MQ0=0;MQRankSum=-1.48;QD=26.42;ReadPosRankSum=-1.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262707    GT:AD:DP:GQ:PL    1/1:7,54:62:99:1680,141,0
14    21871653    rs8022395    C    T    2717.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.14;SNPEFF_AMINO_ACID_CHANGE=V1159;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21871612_21871822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399982    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2751,205,0
14    21871999    rs8011945    T    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554384    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
14    21874068    rs7155123    G    C    1678.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554384    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1711,132,0
14    21928556    .    C    T    498.60    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.306;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.126;QD=15.11;ReadPosRankSum=0.955;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417141    GT:AD:DP:GQ:PL    0/1:16,17:33:99:529,0,543
14    21930596    rs10143000    G    A    1486.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304034    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1520,111,0
14    21944955    rs17516362    G    C    748.72    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=2.595;DB;DP=79;Dels=0.0;FS=13.312;HRun=3;HaplotypeScore=0.9665;MQ=57.74;MQ0=0;MQRankSum=0.768;QD=9.48;ReadPosRankSum=-1.611;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304034    GT:AD:DP:GQ:PL    0/1:48,31:79:99:779,0,1161
14    21945415    rs2282046    A    G    452.10    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.366;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.493;QD=11.59;ReadPosRankSum=1.451;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416256    GT:AD:DP:GQ:PL    0/1:21,18:39:99:482,0,556
14    21955930    rs1061031    G    A    114.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=9.53;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487242    GT:AD:DP:GQ:PL    0/1:7,5:12:99:144,0,247
14    21960318    rs3737049    A    C    110.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.8;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416256    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,125
14    21960408    rs3737050    A    G    792.34    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.274;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=-0.915;QD=14.95;ReadPosRankSum=0.481;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416256    GT:AD:DP:GQ:PL    0/1:26,27:53:99:822,0,823
14    21960424    rs59860769    TG    T    1265.92    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.327;DB;DP=83;FS=4.446;HRun=1;HaplotypeScore=580.5034;IndelType=D;MQ=57.16;MQ0=0;MQRankSum=-1.176;QD=15.25;ReadPosRankSum=0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416256    GT:AD:DP:GQ:PL    0/1:51,32:83:99:1305,0,1156
14    21960816    rs1060722    T    C    1352.08    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=109;Dels=0.0;FS=9.47;HRun=0;HaplotypeScore=0.8667;MQ=58.93;MQ0=0;MQRankSum=-0.218;QD=12.4;ReadPosRankSum=0.144;SNPEFF_AMINO_ACID_CHANGE=L275;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21960667_21961416;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545559    GT:AD:DP:GQ:PL    0/1:63,46:109:99:1382,0,2133
14    21960969    rs7617    G    A    1940.77    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.456;DB;DP=143;Dels=0.0;FS=5.221;HRun=0;HaplotypeScore=1.8561;MQ=59.19;MQ0=0;MQRankSum=-0.369;QD=13.57;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=R326;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21960667_21961416;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545559    GT:AD:DP:GQ:PL    0/1:69,74:143:99:1971,0,2120
14    21967133    rs1061027    C    A    688.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377543    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:722,54,0
14    21967438    rs3168880    G    A    472.98    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.288;DB;DP=48;Dels=0.0;FS=4.351;HRun=0;HaplotypeScore=0.8321;MQ=59.03;MQ0=0;MQRankSum=0.736;QD=9.85;ReadPosRankSum=0.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377543    GT:AD:DP:GQ:PL    0/1:25,23:48:99:503,0,764
14    21967916    rs1139130    A    G    2452.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=31.45;ReadPosRankSum=-1.244;SNPEFF_AMINO_ACID_CHANGE=N445;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21967908_21967946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METTL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298717    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2486,144,0
14    21971729    rs2242526    C    G    452.43    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.605;DB;DP=34;Dels=0.0;FS=1.455;HRun=1;HaplotypeScore=5.4294;MQ=60.0;MQ0=0;MQRankSum=0.017;QD=13.31;ReadPosRankSum=-2.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=METTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000367606    GT:AD:DP:GQ:PL    0/1:18,16:34:99:482,0,461
14    21991626    rs1263810    C    G    161.48    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.809;DB;DP=26;Dels=0.0;FS=1.77;HRun=0;HaplotypeScore=1.8313;MQ=59.11;MQ0=0;MQRankSum=1.503;QD=6.21;ReadPosRankSum=-1.098;SNPEFF_AMINO_ACID_CHANGE=G609R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21990967_21993065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450879    GT:AD:DP:GQ:PL    0/1:19,7:26:99:191,0,636
14    21993498    rs1263811    G    A    1186.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.72;MQ0=0;QD=32.96;SNPEFF_AMINO_ACID_CHANGE=P120S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_21993471_21993788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450879    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1219,93,0
14    22037905    rs8009501    G    A    146.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=18;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=1.9454;MQ=58.71;MQ0=0;MQRankSum=1.358;QD=8.14;ReadPosRankSum=0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303532    GT:AD:DP:GQ:PL    0/1:12,6:18:99:177,0,373
14    22038525    rs11626693    G    T    396.46    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.941;DB;DP=34;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.602;QD=11.66;ReadPosRankSum=-1.941;SNPEFF_AMINO_ACID_CHANGE=T117;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_22037934_22038875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303532    GT:AD:DP:GQ:PL    0/1:18,16:34:99:426,0,529
14    22038659    rs17792778    T    C    146.92    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.1;DB;DP=24;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.3;QD=6.12;ReadPosRankSum=-0.3;SNPEFF_AMINO_ACID_CHANGE=S73G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_22037934_22038875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303532    GT:AD:DP:GQ:PL    0/1:18,6:24:99:177,0,591
14    22038915    rs4982462    A    G    105.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=10.52;ReadPosRankSum=-0.365;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303532    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,207
14    22070146    rs10134340    C    T    479.68    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=3.482;DB;DP=58;Dels=0.0;FS=1.221;HRun=0;HaplotypeScore=0.0;MQ=43.41;MQ0=1;MQRankSum=-2.742;QD=8.27;ReadPosRankSum=-0.716;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AE000658.26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312058    GT:AD:DP:GQ:PL    0/1:33,25:58:99:510,0,888
14    22070509    rs11157069    G    A    752.48    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.569;DB;DP=57;Dels=0.0;FS=1.323;HRun=0;HaplotypeScore=2.4715;MQ=59.1;MQ0=0;MQRankSum=-0.161;QD=13.2;ReadPosRankSum=-2.418;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AE000658.26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312058    GT:AD:DP:GQ:PL    0/1:25,32:57:99:782,0,651
14    22070595    rs67642368    AC    A    308.25    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.862;DB;DP=23;FS=1.76;HRun=2;HaplotypeScore=67.0842;IndelType=D;MQ=58.42;MQ0=0;MQRankSum=0.092;QD=13.4;ReadPosRankSum=-0.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AE000658.26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312058    GT:AD:DP:GQ:PL    0/1:12,11:23:99:347,0,471
14    22070898    rs12897308    T    G    874.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.03;DB;DP=50;Dels=0.0;FS=1.097;HRun=0;HaplotypeScore=1.7219;MQ=58.45;MQ0=0;MQRankSum=0.228;QD=17.48;ReadPosRankSum=0.802;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AE000658.26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312058    GT:AD:DP:GQ:PL    0/1:20,30:50:99:904,0,617
14    22070944    rs12893117    A    G    607.48    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.618;DB;DP=44;Dels=0.0;FS=1.17;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.28;QD=13.81;ReadPosRankSum=-0.061;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AE000658.26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312058    GT:AD:DP:GQ:PL    0/1:21,23:44:99:637,0,629
14    22071105    rs12891635    G    A    110.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.72;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AE000658.26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312058    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,102
14    22090208    rs8016939    A    G    142.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.453;QD=14.3;ReadPosRankSum=-0.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV1-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542354    GT:AD:DP:GQ:PL    0/1:5,5:10:99:173,0,158
14    22133648    rs2874103    G    A    2177.10    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.331;DB;DP=130;Dels=0.0;FS=0.667;HRun=0;HaplotypeScore=3.8494;MQ=59.36;MQ0=0;MQRankSum=-0.742;QD=16.75;ReadPosRankSum=-0.002;SNPEFF_AMINO_ACID_CHANGE=V118M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_22133297_22134238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4E2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408935    GT:AD:DP:GQ:PL    0/1:62,68:130:99:2207,0,1829
14    22133997    rs970382    A    G    397.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.917;DB;DP=35;Dels=0.0;FS=4.938;HRun=1;HaplotypeScore=0.8667;MQ=58.67;MQ0=0;MQRankSum=1.317;QD=11.35;ReadPosRankSum=0.083;SNPEFF_AMINO_ACID_CHANGE=Q234R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_22133297_22134238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4E2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408935    GT:AD:DP:GQ:PL    0/1:20,15:35:99:427,0,637
14    22167296    rs6572018    G    C    2113.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=46.67;MQ0=1;QD=30.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AE000658.30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539655    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2146,171,0
14    22192106    rs926027    A    G    2869.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6597;MQ=58.86;MQ0=0;QD=28.13;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_22191960_22192181;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390425    GT:AD:DP:GQ:PL    1/1:0,101:102:99:2902,229,0
14    22204568    rs2049788    G    A    137.06    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=10.54;ReadPosRankSum=-0.101;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390426    GT:AD:DP:GQ:PL    0/1:7,6:13:99:167,0,252
14    22217356    rs2075477    G    A    724.99    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.397;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.012;QD=16.11;ReadPosRankSum=-0.505;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AE000659.23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496596    GT:AD:DP:GQ:PL    0/1:23,22:45:99:755,0,756
14    22218051    rs2075478    C    T    646.91    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.802;DB;DP=36;Dels=0.0;FS=6.778;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.77;QD=17.97;ReadPosRankSum=-0.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390427    GT:AD:DP:GQ:PL    0/1:15,21:36:99:677,0,409
14    22237127    rs760008    C    T    1741.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.55;MQ0=0;QD=34.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390428    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1775,135,0
14    22279576    rs10138170    C    T    149.95    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=18.74;ReadPosRankSum=1.517;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV9-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390431    GT:AD:DP:GQ:PL    0/1:3,5:8:97.11:180,0,97
14    22279809    rs2856411    A    C    361.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV9-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390431    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:395,30,0
14    22280199    rs2733773    C    T    783.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV9-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390431    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:816,60,0
14    22293554    rs112397277    G    GC    849.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=67.8404;IndelType=I;MQ=60.54;MQ0=0;QD=42.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390432    GT:AD:DP:GQ:PL    1/1:0,19:20:60.20:891,60,0
14    22337119    rs909075    G    C    556.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV13-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390436    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:590,45,0
14    22337181    rs909076    C    T    764.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV13-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390436    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:797,60,0
14    22337393    rs876093    G    A    4029.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9789;MQ=59.82;MQ0=0;QD=31.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV13-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390436    GT:AD:DP:GQ:PL    1/1:0,129:130:99:4030,334,0
14    22356081    rs12885687    T    C    348.22    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=16.58;ReadPosRankSum=0.317;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_22356037_22356190;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV12-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390437    GT:AD:DP:GQ:PL    0/1:10,11:21:99:378,0,347
14    22356225    rs17197550    G    T    212.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.103;QD=13.26;ReadPosRankSum=0.578;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV12-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390437    GT:AD:DP:GQ:PL    0/1:8,8:16:99:242,0,281
14    22356551    rs10483261    T    C    1985.94    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=3.465;DB;DP=133;Dels=0.0;FS=8.746;HRun=1;HaplotypeScore=1.8893;MQ=59.83;MQ0=0;MQRankSum=2.139;QD=14.93;ReadPosRankSum=-1.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV12-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390437    GT:AD:DP:GQ:PL    0/1:65,68:133:99:2016,0,2050
14    22356791    rs10483262    T    G    529.67    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.563;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.111;QD=12.32;ReadPosRankSum=1.292;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV12-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390437    GT:AD:DP:GQ:PL    0/1:25,18:43:99:560,0,879
14    22362971    rs2075481    A    G    1191.13    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.895;DB;DP=90;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.49;MQ0=0;MQRankSum=-1.144;QD=13.23;ReadPosRankSum=0.214;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV8-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390438    GT:AD:DP:GQ:PL    0/1:49,41:90:99:1221,0,1595
14    22363080    rs12895616    T    A    2112.23    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=163;Dels=0.0;FS=5.796;HRun=1;HaplotypeScore=1.9142;MQ=49.2;MQ0=0;MQRankSum=-1.704;QD=12.96;ReadPosRankSum=0.154;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV8-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390438    GT:AD:DP:GQ:PL    0/1:81,82:163:99:2142,0,2302
14    22363084    rs12890675    C    G    1967.48    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=4.957;DB;DP=164;Dels=0.0;FS=3.748;HRun=2;HaplotypeScore=1.9142;MQ=48.78;MQ0=0;MQRankSum=-1.151;QD=12.0;ReadPosRankSum=0.253;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV8-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390438    GT:AD:DP:GQ:PL    0/1:81,83:164:99:1997,0,2075
14    22386246    rs10140594    T    G    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV13-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390439    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:67,0,30
14    22386484    rs10138404    A    G    803.22    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.039;DB;DP=62;Dels=0.0;FS=7.092;HRun=0;HaplotypeScore=1.581;MQ=59.25;MQ0=0;MQRankSum=-0.341;QD=12.96;ReadPosRankSum=1.054;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV13-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390439    GT:AD:DP:GQ:PL    0/1:32,29:62:99:833,0,912
14    22386489    rs10140867    T    A    701.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.74;DB;DP=59;Dels=0.0;FS=7.811;HRun=1;HaplotypeScore=1.581;MQ=59.22;MQ0=0;MQRankSum=1.307;QD=11.89;ReadPosRankSum=0.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV13-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390439    GT:AD:DP:GQ:PL    0/1:29,29:59:99:732,0,867
14    22386659    rs10149013    G    A    420.48    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.137;DB;DP=22;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=19.11;ReadPosRankSum=-0.735;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV13-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390439    GT:AD:DP:GQ:PL    0/1:9,13:22:99:450,0,291
14    22392283    rs28501628    G    A    63.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=7.98;ReadPosRankSum=1.221;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_22392239_22392362;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=AE000659.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390440    GT:AD:DP:GQ:PL    0/1:5,3:8:93.82:94,0,176
14    22392304    rs34365759    G    A    115.69    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=2.632;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=10.52;ReadPosRankSum=1.031;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_22392239_22392362;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=AE000659.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390440    GT:AD:DP:GQ:PL    0/1:6,5:11:99:146,0,220
14    22392366    rs12437316    C    T    201.74    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.992;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.449;QD=10.62;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=AE000659.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390440    GT:AD:DP:GQ:PL    0/1:11,8:19:99:232,0,314
14    22392499    rs12435124    T    C    392.16    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.127;QD=13.52;ReadPosRankSum=-0.285;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=AE000659.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390440    GT:AD:DP:GQ:PL    0/1:16,13:29:99:422,0,508
14    22392626    rs10140810    A    C    1254.90    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=0.519;DB;DP=73;Dels=0.0;FS=0.99;HRun=1;HaplotypeScore=1.9774;MQ=59.49;MQ0=0;MQRankSum=0.764;QD=17.19;ReadPosRankSum=0.508;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=AE000659.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390440    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1285,0,933
14    22392703    rs8021861    G    C    1808.75    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.98;DB;DP=118;Dels=0.0;FS=4.523;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.384;QD=15.33;ReadPosRankSum=-1.579;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=AE000659.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390440    GT:AD:DP:GQ:PL    0/1:58,60:118:99:1839,0,1580
14    22392845    rs17112255    C    T    982.21    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.963;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=13.1;ReadPosRankSum=-1.836;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=AE000659.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390440    GT:AD:DP:GQ:PL    0/1:40,35:75:99:1012,0,979
14    22392983    rs8007442    C    T    136.46    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=12.41;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=AE000659.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390440    GT:AD:DP:GQ:PL    0/1:4,7:11:99:166,0,138
14    22409532    rs3045130    TC    T    155.62    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DB;DP=22;FS=3.821;HRun=1;HaplotypeScore=247.4454;IndelType=D;MQ=46.41;MQ0=0;MQRankSum=-3.606;QD=7.07;ReadPosRankSum=1.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390441    GT:AD:DP:GQ:PL    0/1:12,8:22:99:195,0,400
14    22409534    .    TCTCTC    T    456.22    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DP=21;FS=4.018;HRun=0;HaplotypeScore=258.9991;IndelType=D;MQ=45.67;MQ0=0;MQRankSum=-3.234;QD=21.72;ReadPosRankSum=0.462;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390441    GT:AD:DP:GQ:PL    0/1:13,8:21:99:495,0,447
14    22409571    rs2178779    A    G    659.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=50.65;MQ0=0;QD=27.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390441    GT:AD:DP:GQ:PL    1/1:0,24:24:57.16:693,57,0
14    22409771    rs4982531    A    G    1114.28    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.84;DB;DP=71;Dels=0.0;FS=15.196;HRun=1;HaplotypeScore=1.8907;MQ=59.35;MQ0=0;MQRankSum=-0.773;QD=15.69;ReadPosRankSum=0.486;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390441    GT:AD:DP:GQ:PL    0/1:29,42:71:99:1144,0,935
14    22433866    rs17182972    C    T    247.52    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.069;QD=13.75;ReadPosRankSum=1.203;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV12-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390442    GT:AD:DP:GQ:PL    0/1:8,10:18:99:278,0,268
14    22446740    rs2072607    A    G    111.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=15.92;ReadPosRankSum=0.55;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_22446699_22446964;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV8-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390443    GT:AD:DP:GQ:PL    0/1:3,4:7:92.72:141,0,93
14    22458695    rs956037    A    G    260.48    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=18.61;ReadPosRankSum=0.267;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390444    GT:AD:DP:GQ:PL    0/1:5,9:14:99:290,0,160
14    22466017    rs2280763    T    C    477.07    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=33;Dels=0.0;FS=5.093;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.018;QD=14.46;ReadPosRankSum=-1.402;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390445    GT:AD:DP:GQ:PL    0/1:14,19:33:99:507,0,502
14    22509188    rs4982545    T    C    1372.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390448    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1406,102,0
14    22520684    rs2072611    A    G    227.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=22.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390449    GT:AD:DP:GQ:PL    1/1:0,10:10:24.04:260,24,0
14    22520692    rs2072612    G    T    362.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=24.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390449    GT:AD:DP:GQ:PL    1/1:1,14:15:33.06:396,33,0
14    22521012    rs2072613    C    G    3185.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.84;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.66;MQ0=0;MQRankSum=-0.58;QD=30.63;ReadPosRankSum=-1.077;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390449    GT:AD:DP:GQ:PL    1/1:2,102:104:99:3219,196,0
14    22521051    rs2072614    G    A    3410.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.197;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3264;MQ=59.36;MQ0=0;MQRankSum=-0.778;QD=31.58;ReadPosRankSum=0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390449    GT:AD:DP:GQ:PL    1/1:2,105:108:99:3410,214,0
14    22539108    rs2272547    C    T    1509.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=1.479;QD=36.82;ReadPosRankSum=-1.056;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390450    GT:AD:DP:GQ:PL    1/1:1,40:41:82.60:1543,83,0
14    22539116    rs2272548    G    A    1780.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.36;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=58.68;MQ0=0;MQRankSum=-1.144;QD=33.59;ReadPosRankSum=-1.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390450    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1813,103,0
14    22565073    rs12897143    G    A    61.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.741;QD=6.19;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRDV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390452    GT:AD:DP:GQ:PL    0/1:6,4:10:91.92:92,0,189
14    22573582    rs2075498    A    C    526.46    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.254;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.894;QD=12.53;ReadPosRankSum=-0.088;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390453    GT:AD:DP:GQ:PL    0/1:22,20:42:99:556,0,686
14    22580993    rs2242541    T    C    404.43    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=28;Dels=0.0;FS=1.69;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.655;QD=14.44;ReadPosRankSum=-0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390454    GT:AD:DP:GQ:PL    0/1:13,14:28:99:434,0,378
14    22581071    rs10130061    G    A    148.47    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=18.56;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390454    GT:AD:DP:GQ:PL    0/1:3,5:8:81.66:178,0,82
14    22591821    rs8018887    T    C    228.14    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=10.37;ReadPosRankSum=-1.402;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV26-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390455    GT:AD:DP:GQ:PL    0/1:13,9:22:99:258,0,478
14    22592304    rs35932640    G    A    109.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=-0.4;QD=6.08;ReadPosRankSum=-2.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV26-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390455    GT:AD:DP:GQ:PL    0/1:10,8:18:99:139,0,347
14    22600490    rs8014493    C    T    456.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV8-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390456    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:489,36,0
14    22616547    rs2293730    A    G    763.96    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.591;DB;DP=67;Dels=0.0;FS=8.254;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.654;QD=11.4;ReadPosRankSum=0.449;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390457    GT:AD:DP:GQ:PL    0/1:34,33:67:99:794,0,1018
14    22631217    rs2075492    C    T    347.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.052;DB;DP=36;Dels=0.0;FS=5.978;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.685;QD=9.64;ReadPosRankSum=0.191;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_22631134_22631296;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV29DV5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390458    GT:AD:DP:GQ:PL    0/1:24,12:36:99:377,0,738
14    22631678    rs2075493    C    T    147.67    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.7;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.456;QD=5.68;ReadPosRankSum=2.039;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV29DV5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390458    GT:AD:DP:GQ:PL    0/1:20,6:26:99:178,0,537
14    22631885    rs11845279    T    C    109.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.63;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV29DV5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390458    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,143
14    22636774    rs34504645    A    T    618.43    SnpCluster    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.007;DB;DP=44;Dels=0.0;FS=1.254;HRun=0;HaplotypeScore=0.9159;MQ=58.95;MQ0=0;MQRankSum=0.743;QD=14.06;ReadPosRankSum=-1.351;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557168    GT:AD:DP:GQ:PL    0/1:21,23:44:99:648,0,672
14    22636776    rs34544774    G    C    537.38    SnpCluster    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=44;Dels=0.0;FS=1.25;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.864;QD=12.21;ReadPosRankSum=-1.376;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557168    GT:AD:DP:GQ:PL    0/1:21,23:44:99:567,0,662
14    22636784    rs11157435    A    C    613.47    SnpCluster    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=47;Dels=0.0;FS=1.182;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.032;QD=13.05;ReadPosRankSum=0.586;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557168    GT:AD:DP:GQ:PL    0/1:25,22:47:99:643,0,806
14    22636874    rs11157436    C    T    807.41    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.557;DB;DP=57;Dels=0.0;FS=1.092;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.49;QD=14.17;ReadPosRankSum=-1.627;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557168    GT:AD:DP:GQ:PL    0/1:25,32:57:99:837,0,618
14    22636954    rs11157437    C    T    377.51    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.404;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.669;QD=17.16;ReadPosRankSum=-1.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557168    GT:AD:DP:GQ:PL    0/1:9,13:22:99:408,0,241
14    22637043    rs11157438    C    T    74.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.99;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557168    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:105,0,69
14    22670458    rs2075494    C    T    117.93    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=17;Dels=0.0;FS=15.586;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.352;QD=6.55;ReadPosRankSum=-1.357;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV26-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390460    GT:AD:DP:GQ:PL    0/1:11,6:17:99:148,0,375
14    22670975    rs2242542    G    A    583.59    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=41;Dels=0.0;FS=2.859;HRun=1;HaplotypeScore=0.9469;MQ=59.44;MQ0=0;MQRankSum=0.836;QD=14.23;ReadPosRankSum=-0.156;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV26-2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000390460    GT:AD:DP:GQ:PL    0/1:19,22:41:99:614,0,485
14    22676095    rs7156975    T    C    329.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.392;DB;DP=28;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.237;QD=11.78;ReadPosRankSum=-0.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV26-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390460    GT:AD:DP:GQ:PL    0/1:14,14:28:99:360,0,466
14    22676121    rs17255537    C    T    249.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=1.06;QD=13.88;ReadPosRankSum=-0.971;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV26-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390460    GT:AD:DP:GQ:PL    0/1:9,9:18:99:280,0,303
14    22676183    rs7150514    G    T    78.41    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.68;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV26-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390460    GT:AD:DP:GQ:PL    0/1:1,4:5:28.61:108,0,29
14    22690209    rs2272551    A    C    3353.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390462    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3354,265,0
14    22694777    rs2242544    A    G    337.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.451;DB;DP=32;Dels=0.0;FS=3.393;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.451;QD=10.54;ReadPosRankSum=-1.564;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390462    GT:AD:DP:GQ:PL    0/1:16,16:32:99:367,0,570
14    22694926    rs2075496    C    T    674.17    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=2.555;DB;DP=50;Dels=0.0;FS=4.335;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.797;QD=13.48;ReadPosRankSum=-0.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390462    GT:AD:DP:GQ:PL    0/1:23,27:50:99:704,0,654
14    22695084    rs4982579    C    T    707.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390462    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:741,57,0
14    22695128    rs12889091    A    G    385.71    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.903;QD=17.53;ReadPosRankSum=0.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390462    GT:AD:DP:GQ:PL    0/1:7,15:22:99:416,0,192
14    22772541    rs1467890    A    G    333.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRAV39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390466    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
14    22891883    rs2072616    G    C    1965.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8255;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AE000661.50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555460    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1998,150,0
14    22930038    rs1882705    C    T    655.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AE000661.37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556777    GT:AD:DP:GQ:PL    1/1:0,22:22:54.15:689,54,0
14    22933390    rs36090939    GC    G    210.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=18.0987;IndelType=D;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRDV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535880    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:252,18,0
14    22934658    rs11997    C    A    3568.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRDV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535880    GT:AD:DP:GQ:PL    1/1:0,110:111:99:3569,259,0
14    22934918    rs11627907    C    A    365.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRDV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535880    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:399,30,0
14    22935508    .    T    C    351.49    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=-0.504;QD=11.34;ReadPosRankSum=0.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRDV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535880    GT:AD:DP:GQ:PL    0/1:15,16:31:99:381,0,396
14    22935509    .    G    A    357.50    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.592;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=-0.767;QD=11.53;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRDV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535880    GT:AD:DP:GQ:PL    0/1:15,16:31:99:387,0,390
14    22937795    rs17118194    C    A    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_V_gene;SNPEFF_GENE_NAME=TRDV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535880    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
14    22938211    rs17198805    G    A    1527.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AE000661.37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514473    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1560,114,0
14    22938561    rs11850502    A    T    341.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AE000661.37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514473    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:375,27,0
14    22944295    rs76132819    C    T    176.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=25.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AE000661.37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514473    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:210,15,0
14    22946959    rs8012946    G    C    340.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390480    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:374,27,0
14    22948402    rs78367991    T    C    136.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390480    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
14    22952088    rs227861    G    A    1110.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_pseudogene;SNPEFF_GENE_NAME=TRAJ55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509135    GT:AD:DP:GQ:PL    1/1:0,37:37:93.28:1143,93,0
14    22959592    rs3751467    A    G    314.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=20.98;ReadPosRankSum=1.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_pseudogene;SNPEFF_GENE_NAME=TRAJ51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504127    GT:AD:DP:GQ:PL    0/1:5,10:15:99:345,0,166
14    22959603    rs79714671    C    G    146.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=12.17;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_pseudogene;SNPEFF_GENE_NAME=TRAJ51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504127    GT:AD:DP:GQ:PL    0/1:7,5:12:99:176,0,248
14    22964840    rs66986550    T    TG    2335.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=2;HaplotypeScore=134.6942;IndelType=I;MQ=58.8;MQ0=0;QD=40.27;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    1/1:1,56:58:99:2378,166,0
14    22965118    rs67138389    TC    T    342.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=52.7005;IndelType=D;MQ=50.82;MQ0=0;QD=31.15;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:385,30,0
14    22965144    rs11334442    AC    A    168.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=33.2893;IndelType=D;MQ=29.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
14    22968797    rs61272337    G    A    516.59    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=41;Dels=0.0;FS=3.096;HRun=2;HaplotypeScore=3.7792;MQ=60.0;MQ0=0;MQRankSum=-0.824;QD=12.6;ReadPosRankSum=-1.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    0/1:19,22:41:99:547,0,684
14    22970547    rs141548050    G    T    694.32    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.409;DB;DP=42;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9762;MQ=59.45;MQ0=0;MQRankSum=-1.384;QD=16.53;ReadPosRankSum=-0.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    0/1:17,25:42:99:724,0,506
14    22971137    rs17118919    G    T    760.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=4.22;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.974;QD=23.05;ReadPosRankSum=0.859;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    0/1:11,22:33:99:791,0,256
14    22971265    rs17118924    C    G    1088.58    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.834;DB;DP=79;Dels=0.0;FS=7.589;HRun=2;HaplotypeScore=0.7887;MQ=59.42;MQ0=0;MQRankSum=-0.691;QD=13.78;ReadPosRankSum=2.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1119,0,1149
14    22971360    rs72677510    G    C    284.47    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.003;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.14;MQ0=0;MQRankSum=-1.334;QD=10.54;ReadPosRankSum=0.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    0/1:14,13:27:99:314,0,508
14    22971386    rs78418054    T    G    364.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.033;QD=16.57;ReadPosRankSum=-0.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    0/1:10,12:22:99:394,0,340
14    22972622    rs226990    A    G    98.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=47.12;MQ0=0;QD=24.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:131,12,0
14    22972742    rs2170810    G    A    322.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
14    22972783    rs5807141    AC    A    386.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=96.76;IndelType=D;MQ=57.87;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:429,33,0
14    22972815    rs2170811    C    T    272.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=27.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    1/1:0,10:10:24.05:306,24,0
14    22972844    rs5020726    A    G    293.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390497    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:326,24,0
14    22974041    rs4343185    T    G    753.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:786,63,0
14    22974150    rs35133481    TC    T    1320.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=4;HaplotypeScore=108.7671;IndelType=D;MQ=61.37;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ36;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1362,114,0
14    22974256    rs3811207    A    C    493.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:526,42,0
14    22975700    rs969914    T    G    3673.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8606;MQ=54.54;MQ0=0;QD=32.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3674,286,0
14    22975728    rs3794450    G    A    2535.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.04;MQ0=0;QD=31.69;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:0,79:80:99:2568,199,0
14    22975755    rs3794451    T    C    895.18    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=22.9159;MQ=47.63;MQ0=0;QD=17.9;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:1,49:50:87.18:928,87,0
14    22975756    rs112338851    G    GCACACACACA    3200.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=736.7445;IndelType=I;MQ=44.73;MQ0=0;QD=61.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:25,22:52:99:3243,99,0
14    22976431    rs226994    G    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    22976559    rs1872160    A    T    166.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
14    22978335    rs226997    C    T    742.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;QD=29.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:0,25:25:57.19:776,57,0
14    22978451    rs11443893    G    GC    407.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=19.9987;IndelType=I;MQ=60.0;MQ0=0;QD=40.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390503    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:449,30,0
14    22982737    rs66487334    AC    A    250.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=3;HaplotypeScore=49.882;IndelType=D;MQ=61.34;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:293,24,0
14    22982760    rs227002    T    G    346.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=61.07;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:380,30,0
14    22983223    rs170544    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
14    22984499    rs227027    C    T    148.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9941;MQ=47.12;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:181,15,0
14    22984500    rs3072573    G    GGTT    370.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=49.3283;IndelType=I;MQ=51.02;MQ0=0;QD=52.99;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,5:7:21.07:413,21,0
14    22985386    rs138797989    A    G    898.49    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.178;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.152;QD=14.73;ReadPosRankSum=-1.643;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:33,28:61:99:928,0,1133
14    22985463    rs227029    G    A    334.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:368,27,0
14    22985487    rs11453171    A    AC    246.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=35.458;IndelType=I;MQ=60.0;MQ0=0;QD=41.01;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:288,18,0
14    22987269    rs2204993    C    T    150.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=12.54;ReadPosRankSum=1.191;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,6:12:99:180,0,212
14    22987573    rs141450846    C    T    469.84    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.149;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7273;MQ=58.92;MQ0=0;MQRankSum=1.433;QD=12.05;ReadPosRankSum=-0.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390516    GT:AD:DP:GQ:PL    0/1:24,15:39:99:500,0,811
14    22989292    rs3811199    A    T    422.48    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.723;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.48;QD=15.65;ReadPosRankSum=-1.723;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390516    GT:AD:DP:GQ:PL    0/1:14,13:27:99:452,0,498
14    22989652    rs72521801    G    GA    183.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=10.4432;IndelType=I;MQ=62.13;MQ0=0;QD=36.64;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390516    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
14    22990844    rs11624650    C    T    188.23    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.07;MQ0=0;MQRankSum=1.214;QD=18.82;ReadPosRankSum=0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390516    GT:AD:DP:GQ:PL    0/1:3,7:10:94.68:218,0,95
14    22990930    rs11380759    A    AT    2261.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=136.3385;IndelType=I;MQ=59.76;MQ0=0;QD=45.23;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390516    GT:AD:DP:GQ:PL    1/1:3,47:50:99:2303,144,0
14    22991210    rs227012    T    C    662.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390516    GT:AD:DP:GQ:PL    1/1:0,21:21:60.15:696,60,0
14    22997524    rs227024    A    G    1364.82    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.617;DB;DP=107;Dels=0.0;FS=0.724;HRun=4;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.203;QD=12.76;ReadPosRankSum=-0.446;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390516    GT:AD:DP:GQ:PL    0/1:51,56:107:99:1395,0,1500
14    22997667    rs3074418    A    AGC    563.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=25.6597;IndelType=I;MQ=55.19;MQ0=0;QD=56.4;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390527    GT:AD:DP:GQ:PL    1/1:0,9:10:30.10:606,30,0
14    22998590    rs66883841    AG    A    476.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=65.0562;IndelType=D;MQ=39.19;MQ0=0;QD=31.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_pseudogene;SNPEFF_GENE_NAME=TRAJ15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390522    GT:AD:DP:GQ:PL    1/1:2,13:14:42.13:518,42,0
14    22998619    rs67514043    AC    A    398.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=68.1374;IndelType=D;MQ=38.48;MQ0=0;QD=28.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_pseudogene;SNPEFF_GENE_NAME=TRAJ15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390522    GT:AD:DP:GQ:PL    1/1:1,13:13:36.11:441,36,0
14    22999179    rs11412657    T    TC    389.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=50.795;IndelType=I;MQ=42.94;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_pseudogene;SNPEFF_GENE_NAME=TRAJ15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390522    GT:AD:DP:GQ:PL    1/1:2,9:11:30.10:431,30,0
14    22999202    rs11412658    A    AG    572.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=50.2893;IndelType=I;MQ=47.52;MQ0=0;QD=40.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_pseudogene;SNPEFF_GENE_NAME=TRAJ15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390522    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:614,42,0
14    23000062    rs227003    T    C    145.61    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=18.2;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390523    GT:AD:DP:GQ:PL    0/1:3,5:8:97.71:176,0,98
14    23000185    rs227004    C    T    123.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390523    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
14    23001388    rs227006    T    A    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390523    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
14    23002265    rs11301911    GC    G    181.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=3;HaplotypeScore=14.5219;IndelType=D;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390523    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:223,18,0
14    23004710    rs227008    G    T    84.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390527    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
14    23005041    rs11399696    A    AG    947.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=53.5064;IndelType=I;MQ=60.47;MQ0=0;QD=41.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390527    GT:AD:DP:GQ:PL    1/1:1,22:23:66.22:989,66,0
14    23006663    rs11412533    G    GC    1082.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=1;HaplotypeScore=83.7046;IndelType=I;MQ=61.24;MQ0=0;QD=41.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390527    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1124,75,0
14    23006674    rs1154157    G    C    194.91    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.388;DB;DP=23;Dels=0.0;FS=2.793;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.032;QD=8.47;ReadPosRankSum=0.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390527    GT:AD:DP:GQ:PL    0/1:15,8:23:99:225,0,506
14    23009291    rs1263637    G    C    58.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.5;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_J_gene;SNPEFF_GENE_NAME=TRAJ9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390528    GT:AD:DP:GQ:PL    0/1:6,3:9:88.49:88,0,179
14    23011096    rs1263639    T    A    114.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.31;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,4:7:68.94:144,0,69
14    23012926    rs11627600    T    C    213.02    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=11;Dels=0.0;FS=5.229;HRun=0;HaplotypeScore=0.9997;MQ=57.87;MQ0=0;MQRankSum=0.546;QD=19.37;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,7:11:89.03:243,0,89
14    23013878    rs56031439    C    T    153.25    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.219;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.307;QD=7.66;ReadPosRankSum=0.57;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,6:20:99:183,0,468
14    23014062    rs1263641    G    C    663.53    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7675;MQ=60.0;MQ0=0;MQRankSum=-0.99;QD=13.54;ReadPosRankSum=1.83;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,24:49:99:694,0,755
14    23014106    rs7153643    C    G    352.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.308;DB;DP=26;Dels=0.0;FS=6.198;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-2.0;QD=13.57;ReadPosRankSum=-0.564;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,13:26:99:383,0,452
14    23016202    rs5807166    G    GC    288.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=67.6904;IndelType=I;MQ=60.86;MQ0=0;QD=26.24;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:331,24,0
14    23016644    rs184088135    A    G    1199.15    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.353;DB;DP=76;Dels=0.0;FS=1.185;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-2.011;QD=15.78;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRAC;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:34,42:76:99:1229,0,1156
14    23019657    rs1263658    C    G    343.62    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=16.36;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=TR_C_gene;SNPEFF_GENE_NAME=TRAC;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,11:21:99:374,0,262
14    23020489    rs76024046    T    C    631.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AE000662.93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557232    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:665,51,0
14    23020638    rs15795    T    C    1032.78    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.804;DB;DP=90;Dels=0.01;FS=5.434;HRun=2;HaplotypeScore=2.8799;MQ=59.48;MQ0=0;MQRankSum=-0.431;QD=11.35;ReadPosRankSum=-0.596;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AE000662.92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557595    GT:AD:DP:GQ:PL    0/1:47,42:90:99:1063,0,1558
14    23020688    rs72524111    G    GC    5051.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;FS=0.0;HRun=1;HaplotypeScore=320.6487;IndelType=I;MQ=59.53;MQ0=0;QD=44.31;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AE000662.92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557595    GT:AD:DP:GQ:PL    1/1:2,112:114:99:5051,340,0
14    23020820    rs5807168    G    GC    4514.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;FS=0.0;HRun=1;HaplotypeScore=607.5446;IndelType=I;MQ=60.0;MQ0=0;QD=43.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AE000662.92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557595    GT:AD:DP:GQ:PL    1/1:2,101:103:99:4514,304,0
14    23020825    rs3699    G    C    2968.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2593;MQ=59.91;MQ0=0;QD=29.98;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AE000662.92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557595    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3001,232,0
14    23020919    rs3700    C    T    1373.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.25;MQ0=0;QD=25.92;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AE000662.92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557595    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1407,144,0
14    23020921    rs3701    G    C    1298.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.02;MQ0=0;QD=24.97;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AE000662.92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557595    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1331,138,0
14    23020970    rs3702    G    T    923.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2566;MQ=58.1;MQ0=0;QD=34.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AE000662.92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557595    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:956,72,0
14    23021039    rs9125    G    A    597.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=33.21;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AE000662.92;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557595    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:631,48,0
14    23044002    rs7621    G    T    2425.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479564    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2459,178,0
14    23058084    rs1051101    A    G    1226.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479564    GT:AD:DP:GQ:PL    1/1:0,35:35:96.27:1260,96,0
14    23058214    rs5742729    C    A    45.45    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.36;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250498    GT:AD:DP:GQ:PL    0/1:1,3:4:25.32:75,0,25
14    23102626    rs11846290    G    A    334.16    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=1.022;QD=15.19;ReadPosRankSum=-0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:10,12:22:99:364,0,327
14    23102784    rs1753429    A    G    777.46    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=60;Dels=0.0;FS=8.098;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=0.114;QD=12.96;ReadPosRankSum=-0.053;SNPEFF_AMINO_ACID_CHANGE=F311;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:29,30:60:99:807,0,972
14    23102882    rs1681596    C    A    659.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.42;DB;DP=46;Dels=0.0;FS=13.953;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.578;QD=14.35;ReadPosRankSum=-0.783;SNPEFF_AMINO_ACID_CHANGE=V279L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:23,23:46:99:690,0,671
14    23102896    rs1681597    A    G    746.23    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.886;DB;DP=48;Dels=0.0;FS=14.314;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.01;QD=15.55;ReadPosRankSum=-0.776;SNPEFF_AMINO_ACID_CHANGE=L274S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:22,26:48:99:776,0,666
14    23102969    rs1753430    G    A    974.47    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.534;DB;DP=64;Dels=0.0;FS=1.003;HRun=2;HaplotypeScore=0.7887;MQ=59.28;MQ0=0;MQRankSum=1.204;QD=15.23;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=P250S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:31,33:64:99:1004,0,904
14    23103040    rs3829405    C    T    1017.74    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.797;DB;DP=77;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=4.2234;MQ=58.43;MQ0=0;MQRankSum=1.459;QD=13.22;ReadPosRankSum=0.472;SNPEFF_AMINO_ACID_CHANGE=R226H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:42,34:77:99:1048,0,1158
14    23103282    rs3751481    T    C    763.01    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=1.956;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=56.49;MQ0=0;MQRankSum=-1.174;QD=16.59;ReadPosRankSum=-0.865;SNPEFF_AMINO_ACID_CHANGE=V145;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:17,29:46:99:793,0,422
14    23103347    rs3751482    T    C    956.40    SnpCluster    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=0.062;DB;DP=73;Dels=0.0;FS=8.998;HRun=0;HaplotypeScore=2.9451;MQ=57.69;MQ0=0;MQRankSum=0.051;QD=13.1;ReadPosRankSum=-0.389;SNPEFF_AMINO_ACID_CHANGE=T124A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:34,39:73:99:986,0,1023
14    23103354    rs3751483    A    G    912.43    SnpCluster    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.541;DB;DP=80;Dels=0.0;FS=6.568;HRun=0;HaplotypeScore=2.9451;MQ=57.89;MQ0=0;MQRankSum=-0.192;QD=11.41;ReadPosRankSum=-1.554;SNPEFF_AMINO_ACID_CHANGE=R121;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:35,44:80:99:942,0,1115
14    23103355    rs3751484    C    T    930.84    SnpCluster    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=81;Dels=0.0;FS=6.373;HRun=0;HaplotypeScore=2.9451;MQ=57.92;MQ0=0;MQRankSum=-0.813;QD=11.49;ReadPosRankSum=-1.402;SNPEFF_AMINO_ACID_CHANGE=R121H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23102673_23103716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:36,45:81:99:961,0,1091
14    23103743    rs56305436    C    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR6J1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540461    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,72
14    23235697    rs1957373    C    T    649.77    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=3.359;DB;DP=69;Dels=0.0;FS=1.166;HRun=3;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.589;QD=9.42;ReadPosRankSum=0.514;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285848    GT:AD:DP:GQ:PL    0/1:42,27:69:99:680,0,1396
14    23235808    rs1957374    G    A    1225.70    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.465;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.59;MQ0=0;MQRankSum=0.231;QD=10.94;ReadPosRankSum=-0.212;SNPEFF_AMINO_ACID_CHANGE=L26;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23235731_23235973;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXA1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285848    GT:AD:DP:GQ:PL    0/1:66,46:112:99:1256,0,2008
14    23236524    rs8572    C    T    803.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=30.91;SNPEFF_AMINO_ACID_CHANGE=A104V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23236457_23236618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXA1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285848    GT:AD:DP:GQ:PL    1/1:0,26:26:66.19:837,66,0
14    23239512    rs2075846    A    G    450.32    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.402;QD=13.65;ReadPosRankSum=-0.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483939    GT:AD:DP:GQ:PL    0/1:19,14:33:99:480,0,624
14    23239880    rs1957502    G    A    627.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431881    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:661,51,0
14    23242828    rs1061040    T    C    800.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=K243;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23242782_23242925;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554517    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:834,63,0
14    23242980    rs11568422    A    G    223.91    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=17;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.78;QD=13.17;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285848    GT:AD:DP:GQ:PL    0/1:8,9:17:99:254,0,284
14    23244929    rs3751485    A    T    873.69    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.575;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5782;MQ=59.75;MQ0=0;MQRankSum=-0.874;QD=11.81;ReadPosRankSum=-0.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285848    GT:AD:DP:GQ:PL    0/1:44,30:74:99:904,0,1512
14    23245301    rs3850290    T    C    2327.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXA1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285848    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2360,181,0
14    23299286    rs4982685    T    C    181.74    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=2.693;DB;DP=25;Dels=0.0;FS=4.969;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.846;QD=7.27;ReadPosRankSum=-0.938;SNPEFF_AMINO_ACID_CHANGE=V18A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23299262_23299319;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRPL52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397496    GT:AD:DP:GQ:PL    0/1:18,7:25:99:212,0,588
14    23302585    rs12050397    T    A    526.08    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=48;Dels=0.0;FS=6.777;HRun=0;HaplotypeScore=0.5784;MQ=59.61;MQ0=0;MQRankSum=-0.274;QD=10.96;ReadPosRankSum=-0.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRPL52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553482    GT:AD:DP:GQ:PL    0/1:29,19:48:99:556,0,853
14    23303641    rs4982686    A    C    211.72    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.545;QD=16.29;ReadPosRankSum=-1.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MRPL52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397505    GT:AD:DP:GQ:PL    0/1:5,8:13:99:242,0,164
14    23306048    rs1042703    C    T    422.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.919;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=24.87;ReadPosRankSum=1.123;SNPEFF_AMINO_ACID_CHANGE=P8S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23305766_23306134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311852    GT:AD:DP:GQ:PL    1/1:1,16:17:8.69:455,9,0
14    23310485    rs8006914    C    T    38.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547279    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:69,0,24
14    23311042    rs112947355    CT    C    596.78    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=4.719;DB;DP=33;FS=0.0;HRun=2;HaplotypeScore=156.4361;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=0.806;QD=18.08;ReadPosRankSum=0.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547074    GT:AD:DP:GQ:PL    0/1:13,20:33:99:636,0,489
14    23312718    rs2236303    C    T    354.29    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.598;DB;DP=30;Dels=0.0;FS=14.8;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.766;QD=11.81;ReadPosRankSum=0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547074    GT:AD:DP:GQ:PL    0/1:16,14:30:99:384,0,373
14    23312863    rs2236304    C    G    761.09    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.827;DB;DP=66;Dels=0.0;FS=2.725;HRun=0;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;MQRankSum=1.178;QD=11.53;ReadPosRankSum=0.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547074    GT:AD:DP:GQ:PL    0/1:39,27:66:99:791,0,1314
14    23313182    rs2236308    A    G    212.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547074    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
14    23313405    rs33967775    CA    C    420.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DB;DP=30;FS=0.0;HRun=12;HaplotypeScore=225.5287;IndelType=D;MQ=56.42;MQ0=0;MQRankSum=-1.583;QD=14.03;ReadPosRankSum=1.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547074    GT:AD:DP:GQ:PL    1/1:3,24:30:37.27:463,37,0
14    23314675    rs911912    C    T    155.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547074    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:189,15,0
14    23341666    rs8011536    G    C    173.99    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.772;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.927;QD=11.6;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359591    GT:AD:DP:GQ:PL    0/1:7,8:15:99:204,0,129
14    23352464    rs144414813    TGCACAC    T    414.66    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=105.6298;IndelType=D;MQ=48.42;MQ0=0;MQRankSum=-2.431;QD=25.92;ReadPosRankSum=-0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359591    GT:AD:DP:GQ:PL    0/1:9,7:16:99:454,0,577
14    23354699    rs12891954    A    G    288.22    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.71;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=15.17;ReadPosRankSum=0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359591    GT:AD:DP:GQ:PL    0/1:8,10:19:99:318,0,183
14    23371055    rs1127066    G    C    2045.26    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=151;Dels=0.0;FS=1.339;HRun=0;HaplotypeScore=2.6837;MQ=59.57;MQ0=0;MQRankSum=-1.038;QD=13.54;ReadPosRankSum=-0.237;SNPEFF_AMINO_ACID_CHANGE=F178L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23371023_23371092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555209    GT:AD:DP:GQ:PL    0/1:81,70:151:99:2075,0,2333
14    23371255    rs61680322    G    GGGC    5217.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=122;FS=0.0;HRun=0;HaplotypeScore=363.2933;IndelType=I;MQ=61.75;MQ0=0;MQRankSum=0.527;QD=42.77;ReadPosRankSum=-0.941;SNPEFF_AMINO_ACID_CHANGE=A143AP;SNPEFF_CODON_CHANGE=gcc/gcGCCc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_14_23371189_23371308;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555209    GT:AD:DP:GQ:PL    1/1:31,90:122:99:5218,249,0
14    23373986    rs1043209    G    A    1284.03    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.052;DB;DP=105;Dels=0.0;FS=6.365;HRun=1;HaplotypeScore=0.8941;MQ=59.78;MQ0=0;MQRankSum=-1.456;QD=12.23;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553738    GT:AD:DP:GQ:PL    0/1:62,43:105:99:1314,0,2079
14    23374435    rs2295680    G    A    741.38    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.9;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.276;QD=13.99;ReadPosRankSum=1.363;SNPEFF_AMINO_ACID_CHANGE=I164;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23374303_23374455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346528    GT:AD:DP:GQ:PL    0/1:28,25:53:99:771,0,911
14    23374862    rs2295682    C    T    317.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.977;DB;DP=36;Dels=0.0;FS=1.33;HRun=0;HaplotypeScore=0.734;MQ=59.36;MQ0=0;MQRankSum=-1.275;QD=8.81;ReadPosRankSum=1.176;SNPEFF_AMINO_ACID_CHANGE=R113;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23374815_23374868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338980    GT:AD:DP:GQ:PL    0/1:20,16:36:99:347,0,614
14    23375809    rs8016061    A    G    43.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-0.736;QD=10.86;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553876    GT:AD:DP:GQ:PL    0/1:1,3:4:34.29:73,0,34
14    23391533    rs148891418    C    CACAA    2461.28    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.438;DB;DP=84;FS=10.434;HRun=0;HaplotypeScore=300.2869;IndelType=I;MQ=56.99;MQ0=0;MQRankSum=0.577;QD=29.3;ReadPosRankSum=-0.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421938    GT:AD:DP:GQ:PL    0/1:48,33:84:99:2500,0,1966
14    23391905    rs11624624    G    A    592.08    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8319;MQ=60.0;MQ0=0;MQRankSum=-0.757;QD=20.42;ReadPosRankSum=0.069;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421938    GT:AD:DP:GQ:PL    0/1:10,19:29:99:622,0,320
14    23391913    rs8007089    T    C    239.56    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=9.21;ReadPosRankSum=1.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421938    GT:AD:DP:GQ:PL    0/1:17,9:26:99:270,0,517
14    23394007    rs1956880    T    C    325.79    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=2.437;DB;DP=37;Dels=0.0;FS=1.639;HRun=0;HaplotypeScore=4.4363;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=8.81;ReadPosRankSum=0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421938    GT:AD:DP:GQ:PL    0/1:23,13:37:99:356,0,779
14    23394069    rs1956881    A    C    902.61    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.624;DB;DP=71;Dels=0.0;FS=2.27;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.9;QD=12.71;ReadPosRankSum=0.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421938    GT:AD:DP:GQ:PL    0/1:39,32:71:99:933,0,1154
14    23396600    rs10130756    C    G    71.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.95;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556032    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,104
14    23396680    rs12589539    T    C    273.59    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.335;QD=9.12;ReadPosRankSum=-1.507;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556032    GT:AD:DP:GQ:PL    0/1:17,13:30:99:304,0,515
14    23424186    rs2016392    A    G    551.51    PASS    AB=0.276;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.123;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=54.66;MQ0=0;MQRankSum=1.195;QD=19.02;ReadPosRankSum=-0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206474    GT:AD:DP:GQ:PL    0/1:8,21:29:99:582,0,241
14    23443882    rs941720    A    G    36.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262713    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
14    23443962    rs941721    T    C    146.64    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=11.28;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262713    GT:AD:DP:GQ:PL    0/1:7,6:13:99:177,0,256
14    23445536    rs10134257    G    T    760.03    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.29;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.17;QD=15.51;ReadPosRankSum=-0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262713    GT:AD:DP:GQ:PL    0/1:24,25:49:99:790,0,792
14    23447341    rs6572891    G    A    74.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.97;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262713    GT:AD:DP:GQ:PL    0/1:2,3:5:65.76:105,0,66
14    23459156    rs11624528    G    A    1130.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=37.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299088    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1164,87,0
14    23504238    rs4144360    G    A    85.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425762    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
14    23511304    rs28633242    A    C    196.02    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=13.07;ReadPosRankSum=1.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397359    GT:AD:DP:GQ:PL    0/1:8,7:15:99:226,0,292
14    23511357    rs4981456    G    C    1112.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397359    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1145,84,0
14    23518791    rs2295689    A    G    409.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.31;DB;DP=34;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.034;QD=12.05;ReadPosRankSum=1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267383    GT:AD:DP:GQ:PL    0/1:17,17:34:99:440,0,413
14    23518918    rs11623976    T    C    106.66    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.317;QD=5.93;ReadPosRankSum=-1.122;SNPEFF_AMINO_ACID_CHANGE=R505;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23518836_23518947;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000487137    GT:AD:DP:GQ:PL    0/1:10,8:18:99:137,0,329
14    23523244    rs11625828    C    G    371.02    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.558;QD=21.82;ReadPosRankSum=-0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262710    GT:AD:DP:GQ:PL    0/1:6,11:17:99:401,0,199
14    23524137    rs11418548    T    TG    518.79    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.875;DB;DP=38;FS=0.0;HRun=8;HaplotypeScore=100.2423;IndelType=I;MQ=61.41;MQ0=0;MQRankSum=0.269;QD=13.65;ReadPosRankSum=-0.806;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262710    GT:AD:DP:GQ:PL    0/1:18,19:38:99:558,0,261
14    23530622    rs60168438    T    C    612.84    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.268;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8907;MQ=54.41;MQ0=0;MQRankSum=0.826;QD=8.88;ReadPosRankSum=-1.156;SNPEFF_AMINO_ACID_CHANGE=S1121;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23530507_23530831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457657    GT:AD:DP:GQ:PL    0/1:30,39:69:99:643,0,681
14    23548783    .    A    AGAACGT    3208.15    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.672;DP=120;FS=5.016;HRun=0;HaplotypeScore=576.8454;IndelType=I;MQ=54.0;MQ0=0;MQRankSum=-5.409;QD=26.73;ReadPosRankSum=0.22;SNPEFF_AMINO_ACID_CHANGE=S605YVP;SNPEFF_CODON_CHANGE=tct/tACGTTCct;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_14_23548756_23550018;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457657    GT:AD:DP:GQ:PL    0/1:82,34:120:99:3247,0,3619
14    23549319    rs1885097    A    G    1091.33    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.357;DB;DP=73;Dels=0.0;FS=8.145;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.767;QD=14.95;ReadPosRankSum=-0.182;SNPEFF_AMINO_ACID_CHANGE=S427P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23548756_23550018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457657    GT:AD:DP:GQ:PL    0/1:35,38:73:99:1121,0,1156
14    23549379    rs941719    C    G    1702.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=28.37;SNPEFF_AMINO_ACID_CHANGE=A407P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23548756_23550018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457657    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1735,138,0
14    23549785    rs3811182    T    C    1290.50    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=4.654;DB;DP=91;Dels=0.0;FS=1.775;HRun=0;HaplotypeScore=6.6546;MQ=59.29;MQ0=0;MQRankSum=-0.417;QD=14.03;ReadPosRankSum=-0.23;SNPEFF_AMINO_ACID_CHANGE=I271M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23548756_23550018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457657    GT:AD:DP:GQ:PL    0/1:48,42:91:99:1320,0,1369
14    23550126    rs4982727    T    C    1084.69    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6196;MQ=58.84;MQ0=0;MQRankSum=1.41;QD=18.08;ReadPosRankSum=1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262710    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1115,0,789
14    23550792    rs45461391    T    C    34.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.8;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262710    GT:AD:DP:GQ:PL    0/1:4,2:6:64.82:65,0,148
14    23550887    rs717984    C    A    289.32    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.304;DB;DP=32;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.681;QD=9.04;ReadPosRankSum=0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262710    GT:AD:DP:GQ:PL    0/1:20,12:32:99:319,0,686
14    23559973    rs8020434    T    C    77.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262710    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
14    23567369    rs12400    C    T    359.02    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.343;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.304;QD=17.95;ReadPosRankSum=-1.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262710    GT:AD:DP:GQ:PL    0/1:9,11:20:99:389,0,259
14    23596320    rs761874    A    G    384.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528186    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:417,36,0
14    23596621    rs2180395    G    A    269.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.164;QD=17.98;ReadPosRankSum=0.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528186    GT:AD:DP:GQ:PL    0/1:5,10:15:99:300,0,160
14    23596740    rs11625112    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528186    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
14    23598849    rs7157207    T    G    594.36    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=61;Dels=0.0;FS=3.014;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=2.015;QD=9.74;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206514    GT:AD:DP:GQ:PL    0/1:37,24:61:99:624,0,1090
14    23598952    rs7157021    A    G    3824.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.41;SNPEFF_AMINO_ACID_CHANGE=C187R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23598859_23599008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334354    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3824,295,0
14    23600662    rs12436035    G    T    59.37    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=4.57;ReadPosRankSum=-1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206514    GT:AD:DP:GQ:PL    0/1:10,3:13:89.36:89,0,305
14    23607246    rs1015089    C    A    904.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532568    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:937,72,0
14    23609916    rs10151002    A    T    1059    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206514    GT:AD:DP:GQ:PL    1/1:0,33:34:87.23:1092,87,0
14    23612489    rs2273394    C    G    571.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206514    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:604,45,0
14    23624583    rs8011016    C    T    271.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_14_23624375_23624667;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC7A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529705    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:305,24,0
14    23727902    rs10547691    CTT    C    172    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.216;DB;DP=63;FS=4.212;HRun=19;HaplotypeScore=456.4963;IndelType=D;MQ=55.45;MQ0=0;MQRankSum=2.837;QD=2.73;ReadPosRankSum=3.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399905    GT:AD:DP:GQ:PL    0/1:37,17:63:99:211,0,319
14    23729750    rs2064483    G    A    477.32    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.243;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=14.46;ReadPosRankSum=-0.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399905    GT:AD:DP:GQ:PL    0/1:17,16:33:99:507,0,584
14    23730096    rs7149868    C    A    187.51    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.689;QD=15.63;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399905    GT:AD:DP:GQ:PL    0/1:5,7:12:99:218,0,160
14    23732091    rs11625337    A    G    796.91    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.17;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.676;QD=9.84;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399905    GT:AD:DP:GQ:PL    0/1:35,46:81:99:827,0,1064
14    23732092    rs11626235    T    C    966.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.817;QD=11.78;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399905    GT:AD:DP:GQ:PL    0/1:36,45:82:99:996,0,1067
14    23732300    rs71425080    G    GT    100.29    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.13;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=54.6437;IndelType=I;MQ=59.42;MQ0=0;MQRankSum=0.065;QD=4.78;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399905    GT:AD:DP:GQ:PL    0/1:14,7:21:99:139,0,144
14    23744800    rs148005528    ACAT    A    1027.65    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=6.228;DB;DP=106;FS=5.758;HRun=0;HaplotypeScore=427.2488;IndelType=D;MQ=61.1;MQ0=0;MQRankSum=2.573;QD=9.69;ReadPosRankSum=0.582;SNPEFF_AMINO_ACID_CHANGE=DV545V;SNPEFF_CODON_CHANGE=gatgtg/gtg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_14_23742844_23746396;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMEZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357460    GT:AD:DP:GQ:PL    0/1:75,31:106:99:1067,0,2473
14    23745533    rs10131813    C    T    451.75    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.921;DB;DP=48;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=9.4227;MQ=52.87;MQ0=0;MQRankSum=-0.094;QD=9.41;ReadPosRankSum=-0.509;SNPEFF_AMINO_ACID_CHANGE=A302T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23742844_23746396;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMEZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357460    GT:AD:DP:GQ:PL    0/1:22,17:48:99:482,0,441
14    23777374    rs910332    A    G    905.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.84;SNPEFF_AMINO_ACID_CHANGE=Q133R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23776969_23777408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL2L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250405    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:939,72,0
14    23778198    rs2231302    G    A    89.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=15;Dels=0.0;FS=2.796;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.709;QD=5.97;ReadPosRankSum=-1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553824    GT:AD:DP:GQ:PL    0/1:9,6:15:99:120,0,306
14    23792019    rs8020117    T    C    337.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-124D2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556100    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:370,27,0
14    23816998    rs12896494    T    C    338.68    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.165;QD=14.73;ReadPosRankSum=-1.984;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC22A17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556803    GT:AD:DP:GQ:PL    0/1:9,14:23:99:369,0,260
14    23861811    rs365990    A    G    1448.07    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.098;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9912;MQ=60.0;MQ0=0;MQRankSum=0.033;QD=12.93;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=V1101A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23861771_23861861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356287    GT:AD:DP:GQ:PL    0/1:61,51:112:99:1478,0,1889
14    23865885    rs452036    G    A    577.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.15;DB;DP=44;Dels=0.0;FS=1.267;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.425;QD=13.13;ReadPosRankSum=1.008;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557461    GT:AD:DP:GQ:PL    0/1:22,22:44:99:608,0,639
14    23866713    rs412768    A    G    405.18    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.388;DB;DP=30;Dels=0.0;FS=4.389;HRun=0;HaplotypeScore=2.7336;MQ=59.38;MQ0=0;MQRankSum=-0.603;QD=13.51;ReadPosRankSum=0.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557461    GT:AD:DP:GQ:PL    0/1:14,16:30:99:435,0,350
14    23869806    rs28671012    A    G    181.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=12.96;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356287    GT:AD:DP:GQ:PL    0/1:6,8:14:99:211,0,168
14    23872382    rs17091631    C    T    63.02    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=6.3;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356287    GT:AD:DP:GQ:PL    0/1:7,3:10:93.01:93,0,240
14    23872666    rs434273    T    C    2146.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7884;MQ=59.13;MQ0=0;MQRankSum=1.59;QD=28.62;ReadPosRankSum=-0.451;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356287    GT:AD:DP:GQ:PL    1/1:1,74:75:99:2179,150,0
14    23874117    rs440466    T    C    198.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.153;QD=12.43;ReadPosRankSum=-0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356287    GT:AD:DP:GQ:PL    0/1:8,8:16:99:229,0,281
14    23874541    rs17277970    C    T    1000.42    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.767;DB;DP=87;Dels=0.0;FS=0.918;HRun=0;HaplotypeScore=0.8941;MQ=59.2;MQ0=0;MQRankSum=1.154;QD=11.5;ReadPosRankSum=0.488;SNPEFF_AMINO_ACID_CHANGE=L131;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23874432_23874588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356287    GT:AD:DP:GQ:PL    0/1:54,33:87:99:1030,0,1670
14    23876267    rs28711516    C    T    3071.68    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.065;DB;DP=239;Dels=0.0;FS=8.251;HRun=0;HaplotypeScore=3.0023;MQ=59.42;MQ0=0;MQRankSum=-0.453;QD=12.85;ReadPosRankSum=-0.543;SNPEFF_AMINO_ACID_CHANGE=G56R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23876232_23876445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356287    GT:AD:DP:GQ:PL    0/1:126,113:239:99:3102,0,3704
14    23882144    rs2284651    T    C    115.29    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.71;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6598;MQ=58.71;MQ0=0;MQRankSum=-1.288;QD=6.4;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:10,8:18:99:145,0,332
14    23882186    rs7149517    T    G    70.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4101;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=8.85;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:4,3:8:99:101,0,147
14    23882855    rs2331979    A    G    116.03    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-0.956;QD=12.89;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:4,5:9:91.94:146,0,92
14    23884137    rs3729832    T    A    267.41    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=11.14;ReadPosRankSum=-0.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:15,9:24:99:297,0,545
14    23884889    rs3729830    C    T    704.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.602;DB;DP=60;Dels=0.0;FS=3.679;HRun=0;HaplotypeScore=1.8154;MQ=59.62;MQ0=0;MQRankSum=0.591;QD=11.75;ReadPosRankSum=-0.373;SNPEFF_AMINO_ACID_CHANGE=A1702;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23884838_23885041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:30,30:60:99:735,0,851
14    23885997    rs59799414    G    A    358.34    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=3.507;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.972;QD=18.86;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:7,12:19:99:388,0,196
14    23888323    rs34598192    T    TG    758.21    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.759;DB;DP=40;FS=7.279;HRun=0;HaplotypeScore=92.5333;IndelType=I;MQ=59.11;MQ0=0;MQRankSum=-1.197;QD=18.96;ReadPosRankSum=-0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:21,19:40:99:797,0,683
14    23888617    .    G    T    124.69    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.331;DP=38;Dels=0.0;FS=28.102;HRun=2;HaplotypeScore=5.3285;MQ=42.25;MQ0=0;MQRankSum=-2.936;QD=3.28;ReadPosRankSum=2.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:16,22:38:99:155,0,489
14    23888665    rs2277475    A    T    421.56    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=48.72;MQ0=0;MQRankSum=0.459;QD=9.37;ReadPosRankSum=-1.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:23,19:45:99:452,0,569
14    23892581    rs8019322    T    C    64.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=10.67;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:2,4:6:68.83:94,0,69
14    23892645    rs10545532    AAC    A    54.81    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=173.8247;IndelType=D;MQ=48.17;MQ0=0;MQRankSum=3.201;QD=2.11;ReadPosRankSum=0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:18,6:26:93.84:94,0,289
14    23892888    rs7157716    A    G    1058.01    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=97;Dels=0.0;FS=5.768;HRun=0;HaplotypeScore=1.3123;MQ=59.57;MQ0=0;MQRankSum=-0.407;QD=10.91;ReadPosRankSum=-1.348;SNPEFF_AMINO_ACID_CHANGE=I989;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23892756_23892932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:55,42:97:99:1088,0,1843
14    23893453    rs45457293    G    A    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.61;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:108,0,68
14    23895083    rs3729818    T    C    438.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.951;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.01;MQ0=3;MQRankSum=-5.133;QD=10.95;ReadPosRankSum=0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:20,20:40:99:468,0,601
14    23897507    rs2754163    T    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    23897996    rs3729814    G    A    123.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=6.854;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=12.34;ReadPosRankSum=-1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:5,5:10:99:153,0,163
14    23898994    rs2231126    G    A    664.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.678;DB;DP=50;Dels=0.0;FS=10.029;HRun=0;HaplotypeScore=1.7262;MQ=56.78;MQ0=0;MQRankSum=0.543;QD=13.29;ReadPosRankSum=-0.601;SNPEFF_AMINO_ACID_CHANGE=D376;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23898984_23899122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:25,25:50:99:694,0,744
14    23899725    rs3729810    A    G    78.74    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=6.56;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:7,5:12:99:109,0,248
14    23900794    rs2069542    G    A    775.93    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.442;DB;DP=84;Dels=0.0;FS=0.885;HRun=2;HaplotypeScore=1.5317;MQ=59.56;MQ0=0;MQRankSum=-0.636;QD=9.24;ReadPosRankSum=-0.53;SNPEFF_AMINO_ACID_CHANGE=F244;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23900794_23900886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:52,32:84:99:806,0,1527
14    23902753    rs2069540    G    A    835.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.041;DB;DP=39;Dels=0.0;FS=1.378;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.074;QD=21.43;ReadPosRankSum=0.76;SNPEFF_AMINO_ACID_CHANGE=T63;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23902741_23902949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355349    GT:AD:DP:GQ:PL    0/1:13,26:39:99:866,0,368
14    23938813    rs8015781    A    G    171.74    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.261;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=10.1;ReadPosRankSum=-0.433;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397154    GT:AD:DP:GQ:PL    0/1:9,8:17:99:202,0,287
14    23940081    rs1028587    A    G    992.97    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.481;DB;DP=88;Dels=0.0;FS=2.026;HRun=0;HaplotypeScore=1.7074;MQ=57.87;MQ0=0;MQRankSum=0.234;QD=11.28;ReadPosRankSum=0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557097    GT:AD:DP:GQ:PL    0/1:49,39:88:99:1023,0,1496
14    23940086    rs1028588    A    G    1026.16    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.437;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=57.5;MQ0=0;MQRankSum=1.768;QD=10.92;ReadPosRankSum=0.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557097    GT:AD:DP:GQ:PL    0/1:51,43:94:99:1056,0,1548
14    23940089    rs3215682    AC    A    1444.06    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=8.108;DB;DP=94;FS=0.0;HRun=1;HaplotypeScore=540.1649;IndelType=D;MQ=57.68;MQ0=0;MQRankSum=0.808;QD=15.36;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557097    GT:AD:DP:GQ:PL    0/1:51,43:94:99:1483,0,2070
14    23944505    rs2236260    G    A    417.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=32;Dels=0.0;FS=10.813;HRun=0;HaplotypeScore=0.9995;MQ=59.28;MQ0=0;MQRankSum=-0.546;QD=13.06;ReadPosRankSum=-0.471;SNPEFF_AMINO_ACID_CHANGE=V65;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23944380_23944517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGDN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555128    GT:AD:DP:GQ:PL    0/1:16,16:32:99:448,0,433
14    23944514    rs2236261    C    A    374.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=28;Dels=0.0;FS=4.869;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.023;QD=13.37;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=R68;SNPEFF_CODON_CHANGE=cgC/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23944380_23944517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGDN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555128    GT:AD:DP:GQ:PL    0/1:14,14:28:99:404,0,405
14    23945366    rs2295706    A    G    921.56    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=72;Dels=0.0;FS=12.672;HRun=0;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;MQRankSum=0.755;QD=12.8;ReadPosRankSum=-0.484;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553336    GT:AD:DP:GQ:PL    0/1:35,37:72:99:952,0,1119
14    23947374    rs1956950    G    A    149.24    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.32;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553336    GT:AD:DP:GQ:PL    0/1:2,5:7:52.66:179,0,53
14    23992742    rs223124    T    G    306.15    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.337;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.735;QD=13.92;ReadPosRankSum=0.735;SNPEFF_AMINO_ACID_CHANGE=S2137R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23992412_23995888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419474    GT:AD:DP:GQ:PL    0/1:9,13:22:99:336,0,284
14    23994517    rs4982766    A    G    194.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.578;QD=10.83;ReadPosRankSum=-1.644;SNPEFF_AMINO_ACID_CHANGE=V1545A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_23992412_23995888;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419474    GT:AD:DP:GQ:PL    0/1:10,8:18:99:225,0,317
14    23999520    rs7150257    A    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412565    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:75,0,33
14    24408679    rs77147457    G    A    963.40    PASS    AB=0.34;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.413;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.819;QD=20.5;ReadPosRankSum=-0.64;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_24407940_24409196;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354854    GT:AD:DP:GQ:PL    0/1:16,31:47:99:993,0,472
14    24408866    rs1885810    G    A    162.69    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.141;QD=10.85;ReadPosRankSum=0.984;SNPEFF_AMINO_ACID_CHANGE=A45T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24407940_24409196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136419.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354854    GT:AD:DP:GQ:PL    0/1:8,7:15:99:193,0,265
14    24408954    rs1885811    A    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.59;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354854    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
14    24410092    rs8003627    G    A    77.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=12.95;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354854    GT:AD:DP:GQ:PL    0/1:3,3:6:91.07:108,0,91
14    24410262    rs58941536    C    G    595.20    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.708;DB;DP=57;Dels=0.0;FS=2.277;HRun=0;HaplotypeScore=1.5362;MQ=58.86;MQ0=0;MQRankSum=-1.391;QD=10.44;ReadPosRankSum=0.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354854    GT:AD:DP:GQ:PL    0/1:34,23:57:99:625,0,1002
14    24410417    rs57901513    A    G    111.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136419.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354854    GT:AD:DP:GQ:PL    0/1:3,4:7:99:142,0,99
14    24422915    rs78299733    T    G    122.95    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.221;QD=15.37;ReadPosRankSum=-0.956;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:3,5:8:84.14:153,0,84
14    24422936    rs112883733    C    G    141.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=7.202;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-1.036;QD=14.19;ReadPosRankSum=0.633;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:4,6:10:97.02:172,0,97
14    24422946    rs113357631    A    ACT    306.38    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;FS=10.561;HRun=0;HaplotypeScore=73.6027;IndelType=I;MQ=50.96;MQ0=0;MQRankSum=-1.398;QD=27.85;ReadPosRankSum=0.678;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:4,7:11:99:345,0,135
14    24422995    rs4457918    T    G    94.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=-1.683;QD=10.46;ReadPosRankSum=-1.422;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543741    GT:AD:DP:GQ:PL    0/1:3,6:9:99:124,0,101
14    24423007    rs17099455    G    A    111.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=-1.001;QD=12.44;ReadPosRankSum=-0.573;SNPEFF_AMINO_ACID_CHANGE=A4T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24422964_24423125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313250    GT:AD:DP:GQ:PL    0/1:3,6:9:99:142,0,101
14    24423090    rs2273944    A    G    109.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=13.73;SNPEFF_AMINO_ACID_CHANGE=A13;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24422979_24423125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:142,12,0
14    24424367    rs12147221    G    A    687.59    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.449;DB;DP=43;Dels=0.0;FS=1.778;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.692;QD=15.99;ReadPosRankSum=-0.863;SNPEFF_AMINO_ACID_CHANGE=T66;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24424244_24424421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:22,21:43:99:718,0,684
14    24428929    rs10151581    C    T    408.51    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.543;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=49.35;MQ0=1;MQRankSum=-4.73;QD=7.86;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:27,25:52:99:438,0,920
14    24428930    rs10140455    A    G    391.13    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.253;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=49.56;MQ0=1;MQRankSum=-5.022;QD=7.67;ReadPosRankSum=0.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:27,24:51:99:421,0,946
14    24428950    rs76340890    A    G    51.49    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=49.96;MQ0=1;MQRankSum=-3.215;QD=0.83;ReadPosRankSum=2.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:53,9:62:81.48:81,0,1929
14    24428995    rs28373485    C    T    359.95    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0453;MQ=46.33;MQ0=1;MQRankSum=-3.667;QD=3.71;ReadPosRankSum=-0.338;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:77,20:97:99:390,0,2509
14    24429093    rs11158474    A    C    2251.42    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=250;DS;Dels=0.0;FS=54.469;HRun=1;HaplotypeScore=3.8627;MQ=44.12;MQ0=20;MQRankSum=-11.986;QD=9.01;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:138,111:250:99:2281,0,4101
14    24429298    rs3742492    C    G    626.29    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.452;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.5;MQ0=0;MQRankSum=1.704;QD=13.33;ReadPosRankSum=0.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:23,24:47:99:656,0,700
14    24429334    rs3742493    G    A    235.39    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.255;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.87;MQ0=0;MQRankSum=-0.538;QD=9.42;ReadPosRankSum=0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:16,9:25:99:265,0,547
14    24435672    .    A    C    596.77    MQFilter40    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DP=94;Dels=0.0;FS=8.781;HRun=1;HaplotypeScore=0.8321;MQ=29.56;MQ0=28;MQRankSum=0.673;QD=6.35;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:63,31:94:99:627,0,1062
14    24436381    rs149952034    GA    G    365.87    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=1.038;DB;DP=39;FS=2.174;HRun=10;HaplotypeScore=139.0592;IndelType=D;MQ=46.41;MQ0=2;MQRankSum=-0.658;QD=8.71;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:21,20:39:99:405,0,465
14    24436511    .    T    C    225.47    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.9;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.04;MQ0=14;MQRankSum=2.18;QD=5.12;ReadPosRankSum=-2.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    0/1:28,16:44:99:255,0,452
14    24437922    rs61999779    A    C    450.38    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.013;DB;DP=46;Dels=0.0;FS=1.345;HRun=1;HaplotypeScore=0.9578;MQ=41.59;MQ0=3;MQRankSum=-4.269;QD=9.79;ReadPosRankSum=1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543741    GT:AD:DP:GQ:PL    0/1:20,26:46:99:480,0,559
14    24438189    rs79913059    C    A    139.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=30.93;MQ0=1;QD=19.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308178    GT:AD:DP:GQ:PL    1/1:1,6:7:18:172,18,0
14    24458139    .    G    C    40.14    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.404;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=0.404;QD=2.36;ReadPosRankSum=0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348916    GT:AD:DP:GQ:PL    0/1:13,4:17:70.14:70,0,426
14    24458162    rs2273946    G    C    551.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;QD=34.47;SNPEFF_AMINO_ACID_CHANGE=Q2H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24458031_24458284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:584,45,0
14    24459493    rs60865462    G    A    372.94    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=37;Dels=0.0;FS=1.692;HRun=1;HaplotypeScore=3.429;MQ=55.23;MQ0=0;MQRankSum=-0.751;QD=10.08;ReadPosRankSum=-1.272;SNPEFF_AMINO_ACID_CHANGE=Q49;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24459391_24459568;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348916    GT:AD:DP:GQ:PL    0/1:21,16:37:99:403,0,677
14    24459520    rs45583341    T    C    89.03    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.442;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.63;MQ0=0;MQRankSum=-3.17;QD=4.95;ReadPosRankSum=0.996;SNPEFF_AMINO_ACID_CHANGE=T58;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24459391_24459568;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348916    GT:AD:DP:GQ:PL    0/1:11,7:18:99:119,0,402
14    24464059    rs74396817    C    T    73.62    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.73;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=41.96;MQ0=3;MQRankSum=0.876;QD=2.3;ReadPosRankSum=-0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    0/1:18,14:32:99:104,0,440
14    24464060    rs77951062    A    G    73.61    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.25;MQ0=3;MQRankSum=0.264;QD=2.37;ReadPosRankSum=-0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    0/1:18,13:31:99:104,0,450
14    24464080    rs10139600    A    G    35.41    MQFilter40;QDFilter2    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.828;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7977;MQ=32.7;MQ0=5;MQRankSum=2.35;QD=0.79;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    0/1:33,12:45:65.40:65,0,594
14    24464081    rs7142727    T    C    138.73    MQFilter40    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.173;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7977;MQ=32.7;MQ0=5;MQRankSum=0.152;QD=3.08;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    0/1:24,21:45:99:169,0,490
14    24464125    rs4982834    T    C    1196.09    MQFilter40    AB=0.242;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.178;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4947;MQ=28.0;MQ0=17;MQRankSum=-2.477;QD=12.08;ReadPosRankSum=-0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    0/1:24,75:99:99:1226,0,529
14    24464514    rs75370830    T    A    198.23    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.448;QD=13.22;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    0/1:7,8:15:99:228,0,245
14    24464590    rs10151272    C    A    75.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.77;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:105,0,31
14    24470138    rs1811890    C    T    374.73    MQFilter40    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=1.66;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=32.67;MQ0=21;MQRankSum=-2.219;QD=3.99;ReadPosRankSum=0.404;SNPEFF_AMINO_ACID_CHANGE=R157*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_14_24470072_24470142;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000382755    GT:AD:DP:GQ:PL    0/1:64,30:94:99:405,0,1428
14    24470231    rs79847141    T    G    1092.81    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=0.469;DB;DP=117;Dels=0.0;FS=11.329;HRun=0;HaplotypeScore=0.0;MQ=44.41;MQ0=3;MQRankSum=0.14;QD=9.34;ReadPosRankSum=0.885;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335125    GT:AD:DP:GQ:PL    0/1:73,43:117:99:1123,0,1969
14    24475265    .    T    C    52.21    MQFilter40    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.45;MQ0=2;MQRankSum=1.466;QD=3.48;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537912    GT:AD:DP:GQ:PL    0/1:11,4:15:82.20:82,0,211
14    24475318    .    C    A    58.52    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=20.21;MQ0=2;QD=11.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537912    GT:AD:DP:GQ:PL    1/1:2,3:5:9.01:91,9,0
14    24505614    rs8006288    A    G    56.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.34;MQ0=0;MQRankSum=0.406;QD=6.28;ReadPosRankSum=-0.988;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    0/1:3,6:9:71.28:87,0,71
14    24505722    rs8005834    C    G    397.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=56.35;MQ0=0;QD=30.6;SNPEFF_AMINO_ACID_CHANGE=R5G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24505710_24505837;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:431,33,0
14    24506073    rs2277477    A    C    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
14    24506076    rs2277478    T    C    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:72,0,29
14    24507003    rs28599797    A    C    447.98    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.614;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8295;MQ=60.0;MQ0=0;MQRankSum=-1.087;QD=9.96;ReadPosRankSum=-0.202;SNPEFF_AMINO_ACID_CHANGE=V60;SNPEFF_CODON_CHANGE=gtA/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24506952_24507129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    0/1:25,19:45:99:478,0,637
14    24507010    rs12587718    C    A    556.66    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=3.724;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8295;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=14.27;ReadPosRankSum=-0.354;SNPEFF_AMINO_ACID_CHANGE=R63S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24506952_24507129;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    0/1:17,22:39:99:587,0,509
14    24517936    .    G    T    125.41    QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.57;DP=195;Dels=0.0;FS=11.421;HRun=0;HaplotypeScore=3.656;MQ=50.57;MQ0=2;MQRankSum=-6.965;QD=0.64;ReadPosRankSum=-0.673;SNPEFF_AMINO_ACID_CHANGE=K197N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24517886_24518020;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    0/1:170,25:195:99:155,0,5258
14    24517940    .    T    C    96.39    QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.982;DP=188;Dels=0.0;FS=10.049;HRun=2;HaplotypeScore=2.6594;MQ=50.19;MQ0=2;MQRankSum=-7.033;QD=0.51;ReadPosRankSum=0.518;SNPEFF_AMINO_ACID_CHANGE=L199;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24517886_24518020;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    0/1:164,24:188:99:126,0,5328
14    24522911    rs35809913    C    G    153.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.236;DB;DP=18;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=1.7675;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=8.51;ReadPosRankSum=-0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL136295.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397065    GT:AD:DP:GQ:PL    0/1:9,9:18:99:183,0,328
14    24525634    rs4982851    C    A    440.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:473,36,0
14    24525782    rs4982852    A    G    724.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:758,63,0
14    24526206    rs45484702    T    C    91.18    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=6.51;ReadPosRankSum=-0.696;SNPEFF_AMINO_ACID_CHANGE=P345;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24526124_24526233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342740    GT:AD:DP:GQ:PL    0/1:8,5:14:99:121,0,260
14    24526287    rs7161473    G    C    438.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:472,36,0
14    24526478    rs12879859    A    G    146.64    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.212;QD=9.16;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:9,7:16:99:177,0,289
14    24527220    rs4982853    C    T    754.01    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=52;Dels=0.0;FS=2.512;HRun=0;HaplotypeScore=2.5599;MQ=59.11;MQ0=0;MQRankSum=1.486;QD=14.5;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=Y423;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24527169_24527273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342740    GT:AD:DP:GQ:PL    0/1:24,28:52:99:784,0,709
14    24529209    rs61564890    C    T    825.96    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=1.327;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.447;QD=13.11;ReadPosRankSum=0.763;SNPEFF_AMINO_ACID_CHANGE=P633;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24529179_24529272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342740    GT:AD:DP:GQ:PL    0/1:32,31:63:99:856,0,929
14    24529260    rs58283036    C    T    821.41    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=61;Dels=0.0;FS=2.15;HRun=0;HaplotypeScore=0.9916;MQ=59.69;MQ0=0;MQRankSum=0.685;QD=13.47;ReadPosRankSum=-1.854;SNPEFF_AMINO_ACID_CHANGE=D650;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24529179_24529272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342740    GT:AD:DP:GQ:PL    0/1:31,30:61:99:851,0,904
14    24529637    rs1951637    T    G    37.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:2,2:4:67.17:67,0,72
14    24529820    rs1951636    C    G    232.76    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.315;DB;DP=36;Dels=0.0;FS=3.631;HRun=0;HaplotypeScore=2.6967;MQ=59.36;MQ0=0;MQRankSum=-0.27;QD=6.47;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:23,13:36:99:263,0,684
14    24529890    rs1951635    A    G    1039.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=L705;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24529837_24529965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342740    GT:AD:DP:GQ:PL    1/1:0,32:32:84.26:1072,84,0
14    24531641    rs960266    G    C    889.39    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=3.291;DB;DP=86;Dels=0.0;FS=3.47;HRun=1;HaplotypeScore=1.8662;MQ=59.3;MQ0=0;MQRankSum=0.479;QD=10.34;ReadPosRankSum=-0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:44,42:86:99:919,0,1307
14    24534270    rs117833529    C    T    349.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=4.146;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.615;QD=10.91;ReadPosRankSum=1.032;SNPEFF_AMINO_ACID_CHANGE=R1062W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24534167_24534482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342740    GT:AD:DP:GQ:PL    0/1:20,12:32:99:379,0,575
14    24534762    rs10150428    C    G    370.84    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.207;DB;DP=40;Dels=0.0;FS=4.107;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.343;QD=9.27;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:27,13:40:99:401,0,794
14    24534781    rs12590548    G    A    802.44    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DB;DP=41;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.635;QD=19.57;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:14,27:41:99:832,0,415
14    24537701    rs8021991    T    C    754.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.339;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.213;QD=14.51;ReadPosRankSum=0.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:26,26:52:99:785,0,835
14    24538205    rs2070344    A    G    156.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=19.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:2,6:8:58.61:186,0,59
14    24542458    rs3742497    T    A    43.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
14    24543158    rs75415848    C    T    221.19    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.278;QD=20.11;ReadPosRankSum=1.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    0/1:4,7:11:99:251,0,129
14    24543787    rs143981627    C    T    403.84    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=0.792;DB;DP=55;Dels=0.0;FS=5.855;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.137;QD=7.34;ReadPosRankSum=-0.428;SNPEFF_AMINO_ACID_CHANGE=N182;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24543740_24543823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216775    GT:AD:DP:GQ:PL    0/1:38,17:55:99:434,0,1042
14    24543808    rs2070343    G    C    1436.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=L189;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24543740_24543823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216775    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1470,114,0
14    24543873    rs2025256    G    A    1148.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334420    GT:AD:DP:GQ:PL    1/1:0,34:34:90.27:1181,90,0
14    24545366    rs2070342    T    C    361    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=40;Dels=0.0;FS=1.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=9.03;ReadPosRankSum=-1.303;SNPEFF_AMINO_ACID_CHANGE=I311;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24545358_24545491;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216775    GT:AD:DP:GQ:PL    0/1:22,18:40:99:391,0,676
14    24545375    rs2070341    C    T    719.29    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.374;DB;DP=42;Dels=0.0;FS=3.069;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=17.13;ReadPosRankSum=0.538;SNPEFF_AMINO_ACID_CHANGE=T314;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24545358_24545491;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216775    GT:AD:DP:GQ:PL    0/1:17,25:42:99:749,0,376
14    24545835    rs45621931    C    T    236.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=21;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.03;QD=11.24;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396995    GT:AD:DP:GQ:PL    0/1:12,9:21:99:266,0,375
14    24545984    rs2070345    G    C    131.50    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=10.12;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396995    GT:AD:DP:GQ:PL    0/1:8,5:13:99:161,0,289
14    24551657    .    C    G    707.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=11.23;ReadPosRankSum=-0.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216775    GT:AD:DP:GQ:PL    0/1:35,28:63:99:738,0,1051
14    24567304    rs2759409    C    A    62.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=10.48;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216780    GT:AD:DP:GQ:PL    0/1:3,3:6:92.85:93,0,108
14    24567498    rs3021119    A    C    586.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.946;QD=25.49;ReadPosRankSum=-1.734;SNPEFF_AMINO_ACID_CHANGE=Q121P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24567412_24567596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216780    GT:AD:DP:GQ:PL    1/1:2,21:23:48.15:619,48,0
14    24587515    rs2277480    G    A    572.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.439;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=13.63;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326009    GT:AD:DP:GQ:PL    0/1:21,21:42:99:603,0,698
14    24587545    rs2277481    A    G    738.33    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=50;Dels=0.0;FS=1.472;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.693;QD=14.77;ReadPosRankSum=1.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326009    GT:AD:DP:GQ:PL    0/1:22,28:50:99:768,0,696
14    24587639    rs3825584    G    A    1393.18    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=4.135;DB;DP=82;Dels=0.0;FS=0.839;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.864;QD=16.99;ReadPosRankSum=-0.575;SNPEFF_AMINO_ACID_CHANGE=R107H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24587597_24587743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396936    GT:AD:DP:GQ:PL    0/1:36,46:82:99:1423,0,1045
14    24587667    rs17101367    C    T    1103.44    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DB;DP=72;Dels=0.0;FS=4.817;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.161;QD=15.12;ReadPosRankSum=0.572;SNPEFF_AMINO_ACID_CHANGE=D116;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24587597_24587743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396936    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1133,0,837
14    24587795    rs2277482    C    T    219.69    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.433;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=12.92;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326009    GT:AD:DP:GQ:PL    0/1:8,9:17:99:250,0,262
14    24601049    .    T    C    411.39    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.189;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=-0.79;QD=9.79;ReadPosRankSum=-0.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FITM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267426    GT:AD:DP:GQ:PL    0/1:26,16:42:99:441,0,831
14    24601318    rs11574503    G    C    415.16    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=3.578;DB;DP=26;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.414;QD=15.97;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FITM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267426    GT:AD:DP:GQ:PL    0/1:11,15:26:99:445,0,285
14    24614361    rs7146672    T    G    4123.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.83;MQ0=0;QD=37.14;SNPEFF_AMINO_ACID_CHANGE=H89P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24614267_24614364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216802    GT:AD:DP:GQ:PL    1/1:0,110:111:99:4123,310,0
14    24625110    rs78953135    G    A    38.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324103    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
14    24642348    rs11547058    C    T    683.15    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.159;DB;DP=57;Dels=0.0;FS=2.266;HRun=0;HaplotypeScore=1.5717;MQ=59.6;MQ0=0;MQRankSum=-0.28;QD=11.99;ReadPosRankSum=-0.511;SNPEFF_AMINO_ACID_CHANGE=H94;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24642335_24642407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311457    GT:AD:DP:GQ:PL    0/1:32,25:57:99:713,0,839
14    24646406    rs10690822    G    GGAA    1582.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=74.7914;IndelType=I;MQ=58.17;MQ0=0;QD=58.59;SNPEFF_AMINO_ACID_CHANGE=-228E;SNPEFF_CODON_CHANGE=-/GAA;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_14_24646350_24646428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REC8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311457    GT:AD:DP:GQ:PL    1/1:2,25:27:75.26:1624,75,0
14    24646469    rs17199551    T    C    271.78    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=31;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=1.562;QD=8.77;ReadPosRankSum=-1.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IPO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354464    GT:AD:DP:GQ:PL    0/1:20,11:31:99:302,0,684
14    24679877    rs2295322    C    T    6120.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.87;MQ0=0;MQRankSum=0.077;QD=34.19;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=G153R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24679860_24679974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-468E2.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000530611    GT:AD:DP:GQ:PL    1/1:2,176:178:99:6120,398,0
14    24680006    rs17693590    G    A    1346.25    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.718;DB;DP=123;Dels=0.0;FS=3.989;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-1.168;QD=10.95;ReadPosRankSum=1.132;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL096870.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527154    GT:AD:DP:GQ:PL    0/1:72,51:123:99:1376,0,2278
14    24702987    rs11158615    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348719    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
14    24709240    .    T    C    2840.30    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.674;DP=249;DS;Dels=0.0;FS=4.661;HRun=4;HaplotypeScore=4.0436;MQ=60.0;MQ0=0;MQRankSum=-0.44;QD=11.41;ReadPosRankSum=-2.384;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348719    GT:AD:DP:GQ:PL    0/1:132,117:249:99:2870,0,4132
14    24718515    rs2229463    G    A    471.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=31.44;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206765    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:505,39,0
14    24736027    rs14193    G    A    927.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.23;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=R474;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24735982_24736095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216840    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:961,72,0
14    24736157    rs941503    G    A    214.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=19.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543002    GT:AD:DP:GQ:PL    1/1:0,11:11:18.06:247,18,0
14    24736961    rs729421    T    C    551.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=T420A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24736866_24736982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216840    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:584,42,0
14    24737203    rs941502    A    T    673.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216840    GT:AD:DP:GQ:PL    1/1:0,23:23:54.15:707,54,0
14    24739043    rs2295314    G    A    48.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABGGTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216840    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
14    24760009    rs4568    G    A    1164.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288111    GT:AD:DP:GQ:PL    1/1:0,34:34:87.29:1198,87,0
14    24760255    rs2295310    C    T    456    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288111    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:489,36,0
14    24760764    rs10134537    G    A    7609.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=227;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4594;MQ=59.82;MQ0=0;QD=33.52;SNPEFF_AMINO_ACID_CHANGE=T241I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24760762_24760831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288111    GT:AD:DP:GQ:PL    1/1:0,227:227:99:7609,557,0
14    24769849    rs113258190    A    AGAG    4343.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.237;DB;DP=120;FS=0.0;HRun=0;HaplotypeScore=399.6946;IndelType=I;MQ=60.48;MQ0=0;MQRankSum=-0.877;QD=36.2;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=-162E;SNPEFF_CODON_CHANGE=-/GAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_14_24769614_24770063;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267425    GT:AD:DP:GQ:PL    1/1:47,69:120:99:4344,190,0
14    24771137    rs4247000    G    A    6683.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=189;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0463;MQ=59.63;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIDEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258807    GT:AD:DP:GQ:PL    1/1:0,188:189:99:6684,497,0
14    24771256    rs4247001    T    C    3951.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5449;MQ=59.79;MQ0=0;QD=36.25;SNPEFF_AMINO_ACID_CHANGE=H298;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24771171_24771312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267425    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3952,295,0
14    24772829    rs4981501    A    T    544.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIDEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258807    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:577,42,0
14    24772922    rs4982895    C    T    1342.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=29.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIDEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258807    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1376,102,0
14    24774617    rs2144493    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396802    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
14    24775846    rs2281472    C    T    317.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396802    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:350,27,0
14    24776018    rs74476682    C    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396802    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
14    24776344    rs1053648    T    C    40.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396802    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
14    24776401    rs1053649    C    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396802    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
14    24787588    rs3181385    T    C    931.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396747    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:964,72,0
14    24791136    rs4981504    A    G    383.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=25.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396747    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:416,36,0
14    24791571    rs12886362    A    C    250.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396747    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
14    24793600    rs1884366    G    A    1625.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554959    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1659,123,0
14    24793647    rs6573722    T    C    535.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554959    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:569,48,0
14    24793762    rs17184682    T    G    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.57;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554959    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:64,0,71
14    24794440    rs17184689    T    G    135.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=12.3;ReadPosRankSum=1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554959    GT:AD:DP:GQ:PL    0/1:5,6:11:99:165,0,169
14    24795237    rs55970272    T    C    203.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.799;MQ=55.66;MQ0=0;QD=18.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    1/1:0,11:11:18.06:236,18,0
14    24795258    rs11622863    C    T    40.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.344;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.495;QD=2.73;ReadPosRankSum=-1.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    0/1:10,5:15:70.96:71,0,368
14    24795495    rs17256902    G    A    578.76    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.43;DB;DP=39;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=0.8667;MQ=60.28;MQ0=0;MQRankSum=0.295;QD=14.84;ReadPosRankSum=1.897;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    0/1:19,20:39:99:609,0,587
14    24795585    rs78289669    GT    G    518.50    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=2.872;DB;DP=23;FS=5.275;HRun=1;HaplotypeScore=58.3658;IndelType=D;MQ=60.47;MQ0=0;MQRankSum=-2.55;QD=22.54;ReadPosRankSum=0.549;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    0/1:8,15:23:99:558,0,311
14    24798245    rs17102976    C    T    267.83    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.451;DB;DP=27;Dels=0.0;FS=4.682;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=9.92;ReadPosRankSum=-1.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    0/1:17,10:27:99:298,0,539
14    24799024    rs1109152    G    C    773.46    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=61;Dels=0.0;FS=1.381;HRun=0;HaplotypeScore=1.9581;MQ=60.0;MQ0=0;MQRankSum=1.893;QD=12.68;ReadPosRankSum=-0.795;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    0/1:30,29:61:99:803,0,819
14    24799287    rs1109153    A    T    187.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=58.89;MQ0=0;MQRankSum=0.036;QD=8.91;ReadPosRankSum=-1.812;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    0/1:12,9:21:99:217,0,371
14    24799358    rs10483285    C    A    628.55    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.695;DB;DP=38;Dels=0.0;FS=2.974;HRun=1;HaplotypeScore=0.8941;MQ=59.39;MQ0=0;MQRankSum=0.31;QD=16.54;ReadPosRankSum=-0.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    0/1:16,22:38:99:659,0,459
14    24799578    rs12436417    C    G    264.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.191;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;MQRankSum=-0.527;QD=10.16;ReadPosRankSum=-0.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554674    GT:AD:DP:GQ:PL    0/1:15,10:26:99:294,0,429
14    24802263    rs8003158    A    G    131.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216274    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
14    24805463    rs3212254    G    T    570.84    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.42;DB;DP=54;Dels=0.0;FS=2.518;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.188;QD=10.57;ReadPosRankSum=-0.009;SNPEFF_AMINO_ACID_CHANGE=P492Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24805227_24805601;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216274    GT:AD:DP:GQ:PL    0/1:30,24:54:99:601,0,963
14    24838621    rs1955915    C    T    2735.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFATC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250373    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2769,220,0
14    24839165    rs2228233    C    T    828.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.13;SNPEFF_AMINO_ACID_CHANGE=D117;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24838705_24839800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFATC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553879    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:861,63,0
14    24841517    rs10141527    A    G    362.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFATC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440487    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:395,30,0
14    24845185    rs45570732    C    T    1929.79    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=142;Dels=0.0;FS=1.346;HRun=0;HaplotypeScore=2.4892;MQ=59.84;MQ0=0;MQRankSum=-0.223;QD=13.59;ReadPosRankSum=0.294;SNPEFF_AMINO_ACID_CHANGE=T180M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24845181_24845307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFATC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000554473    GT:AD:DP:GQ:PL    0/1:73,69:142:99:1960,0,2065
14    24846757    rs2243891    A    G    648.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=38.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFATC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554779    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:682,51,0
14    24846961    rs10362    G    T    357.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.574;DB;DP=21;Dels=0.0;FS=6.043;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=17.01;ReadPosRankSum=-0.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NFATC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553469    GT:AD:DP:GQ:PL    0/1:7,14:21:99:387,0,237
14    24882373    rs3818251    G    A    164.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NYNRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382554    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
14    24882440    rs4982909    G    C    125.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NYNRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382554    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
14    24883887    rs8017377    G    A    790.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_AMINO_ACID_CHANGE=A978T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24883802_24888494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NYNRIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382554    GT:AD:DP:GQ:PL    1/1:0,24:24:63.17:824,63,0
14    24887462    rs3814811    T    C    482.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NYNRIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554505    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:515,39,0
14    24896830    rs7154785    G    T    298.36    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.62;QD=22.95;ReadPosRankSum=-0.694;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    0/1:4,9:13:99:328,0,126
14    24900231    rs3825588    G    C    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:68,6,0
14    24901276    rs7151995    G    T    737.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.33;SNPEFF_AMINO_ACID_CHANGE=W270L;SNPEFF_CODON_CHANGE=tGg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24900669_24901816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    1/1:0,27:27:63.19:771,63,0
14    24901433    rs17795094    C    T    317.06    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.42;DB;DP=31;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.387;QD=10.23;ReadPosRankSum=-0.258;SNPEFF_AMINO_ACID_CHANGE=H322;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24900669_24901816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    0/1:20,11:31:99:347,0,571
14    24901844    rs2255591    A    G    521.40    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.405;DB;DP=47;Dels=0.0;FS=1.162;HRun=2;HaplotypeScore=1.565;MQ=58.61;MQ0=0;MQRankSum=2.298;QD=11.09;ReadPosRankSum=1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556510    GT:AD:DP:GQ:PL    0/1:27,20:47:99:551,0,869
14    24905123    rs2038502    G    A    362.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=36.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556510    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
14    24905533    rs2277488    G    A    333.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556510    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
14    24905548    rs2277489    G    A    347.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556510    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:381,30,0
14    24909281    rs1043839    C    T    1014.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553935    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1048,78,0
14    24909362    rs1043831    T    C    1112.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=30.08;SNPEFF_AMINO_ACID_CHANGE=Q103R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24909108_24909698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SDR39U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555365    GT:AD:DP:GQ:PL    1/1:0,37:37:90.26:1146,90,0
14    24909475    rs3211056    C    G    907.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_AMINO_ACID_CHANGE=L107F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24908985_24909807;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SDR39U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553930    GT:AD:DP:GQ:PL    1/1:0,28:28:75.22:941,75,0
14    24909731    rs2273628    C    T    125.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_AMINO_ACID_CHANGE=R22K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24908985_24909807;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SDR39U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553930    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
14    24910210    rs712487    C    A    2894.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=58.69;MQ0=0;QD=32.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553935    GT:AD:DP:GQ:PL    1/1:0,88:89:99:2928,223,0
14    24910317    rs10668100    C    CTT    2103.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=1;HaplotypeScore=81.5902;IndelType=I;MQ=58.41;MQ0=0;QD=56.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553935    GT:AD:DP:GQ:PL    1/1:1,36:37:99:2146,111,0
14    24910846    rs11628143    C    T    451.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    1/1:0,16:16:39.09:485,39,0
14    24910876    rs11158703    G    A    590.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:623,48,0
14    24910973    rs11625819    T    G    597.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.97;SNPEFF_AMINO_ACID_CHANGE=I105L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24910880_24911001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SDR39U1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336353    GT:AD:DP:GQ:PL    1/1:0,26:26:60.06:630,60,0
14    24910974    rs11625820    T    A    606.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.34;SNPEFF_AMINO_ACID_CHANGE=V104;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24910880_24911001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SDR39U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336353    GT:AD:DP:GQ:PL    1/1:0,26:26:60.08:640,60,0
14    24911116    rs11158704    C    T    324.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:358,27,0
14    24911169    rs11158705    C    T    159.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:192,15,0
14    24911764    rs1956903    G    A    1439.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHNYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251343    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1472,114,0
14    24911852    rs12897925    C    G    1856.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=30.95;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_14_24911604_24911982;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SDR39U1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336353    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1890,168,0
14    24974963    rs10140250    G    C    725.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206446    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:759,57,0
14    24975032    rs1951133    C    T    313.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206446    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:346,27,0
14    24975435    rs5249    G    T    1067.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.34;MQ0=0;QD=30.5;SNPEFF_AMINO_ACID_CHANGE=S133;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_24975234_24975488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250378    GT:AD:DP:GQ:PL    1/1:0,34:35:84.25:1101,84,0
14    24975509    rs1885108    T    C    970.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206446    GT:AD:DP:GQ:PL    1/1:0,29:30:78.24:1004,78,0
14    25043068    rs1885597    T    G    410.95    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.632;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.23;MQ0=0;MQRankSum=-0.628;QD=13.7;ReadPosRankSum=0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CTSG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216336    GT:AD:DP:GQ:PL    0/1:17,13:30:99:441,0,543
14    25044089    rs2070697    C    T    133.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.653;QD=8.91;ReadPosRankSum=1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CTSG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216336    GT:AD:DP:GQ:PL    0/1:10,5:15:99:164,0,255
14    25044712    rs1957523    C    T    792.78    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=4.055;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.705;QD=20.33;ReadPosRankSum=0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CTSG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216336    GT:AD:DP:GQ:PL    0/1:15,24:39:99:823,0,392
14    25078914    rs1957526    A    C    296.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216338    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:330,27,0
14    25102160    rs8192917    C    T    2223.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=57.35;MQ0=0;QD=35.87;SNPEFF_AMINO_ACID_CHANGE=R43Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_25102121_25102281;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415355    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2257,175,0
14    25281843    rs712491    C    T    326.29    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.553;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=19.19;ReadPosRankSum=0.553;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548182    GT:AD:DP:GQ:PL    0/1:6,11:17:99:356,0,196
14    25287095    rs854398    T    C    133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STXBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358326    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
14    25901275    rs112958249    G    A    951.69    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.053;DB;DP=83;Dels=0.0;FS=4.383;HRun=0;HaplotypeScore=2.3893;MQ=58.64;MQ0=0;MQRankSum=-0.391;QD=11.47;ReadPosRankSum=-1.512;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-388G3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547237    GT:AD:DP:GQ:PL    0/1:50,32:83:99:982,0,1502
14    26641276    rs7144417    G    A    401.31    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;MQRankSum=-0.767;QD=13.84;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL049831.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390748    GT:AD:DP:GQ:PL    0/1:16,13:29:99:431,0,477
14    26939474    rs1245213    T    A    144.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NOVA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547619    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
14    30046816    rs8010772    G    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331968    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    30047580    rs2273815    C    T    1011.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331968    GT:AD:DP:GQ:PL    1/1:0,33:33:75.25:1045,75,0
14    30066929    rs2230505    A    G    1680.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.34;SNPEFF_AMINO_ACID_CHANGE=I734;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_30066697_30066964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331968    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1713,126,0
14    30066976    rs3783299    A    T    1007.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331968    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1041,78,0
14    30068194    rs2273813    T    G    1629.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.63;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331968    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1663,123,0
14    30103441    rs1191599    T    C    162.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468370    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
14    30105291    rs2273810    G    A    116.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=23.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468370    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
14    30125577    rs5007053    A    G    462.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331968    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:495,36,0
14    30125660    rs6571317    A    G    1003.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=27.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331968    GT:AD:DP:GQ:PL    1/1:0,36:36:81.24:1037,81,0
14    31050215    rs58049    A    T    353.93    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.645;DB;DP=29;Dels=0.0;FS=3.15;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.428;QD=12.2;ReadPosRankSum=-0.875;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G2E3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206595    GT:AD:DP:GQ:PL    0/1:13,15:29:99:384,0,472
14    31097345    rs2273522    G    A    111.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.92;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396629    GT:AD:DP:GQ:PL    0/1:3,4:7:98.90:141,0,99
14    31097394    rs45492697    G    T    187.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=21;Dels=0.0;FS=2.73;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=8.94;ReadPosRankSum=-0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396629    GT:AD:DP:GQ:PL    0/1:14,7:21:99:218,0,434
14    31099738    rs229150    A    G    661.53    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.008;DB;DP=71;Dels=0.0;FS=0.917;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.575;QD=9.32;ReadPosRankSum=-0.757;SNPEFF_AMINO_ACID_CHANGE=K38R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31099683_31099771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000557076    GT:AD:DP:GQ:PL    0/1:41,30:71:99:692,0,1232
14    31103012    rs229154    A    C    41.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.46;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556413    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:72,0,70
14    31107564    rs229162    T    G    157.57    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=22.51;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557713    GT:AD:DP:GQ:PL    0/1:2,5:7:62.22:188,0,62
14    31108977    rs2273521    T    C    108.53    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=26;Dels=0.0;FS=2.021;HRun=0;HaplotypeScore=0.7887;MQ=59.14;MQ0=0;MQRankSum=-0.822;QD=4.02;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557713    GT:AD:DP:GQ:PL    0/1:20,6:26:99:139,0,652
14    31139349    rs230364    G    C    2067.88    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=5.113;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.242;QD=16.81;ReadPosRankSum=0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396629    GT:AD:DP:GQ:PL    0/1:60,63:123:99:2098,0,1974
14    31188414    rs11625381    A    G    765.74    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=59.58;MQ0=0;MQRankSum=0.871;QD=17.4;ReadPosRankSum=-0.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555259    GT:AD:DP:GQ:PL    0/1:18,26:44:99:796,0,599
14    31354374    rs12881068    A    T    668.75    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=2.098;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.079;QD=11.53;ReadPosRankSum=-0.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=COCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553772    GT:AD:DP:GQ:PL    0/1:35,23:58:99:699,0,1209
14    31355096    rs1045644    C    G    1133.10    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=62;Dels=0.0;FS=1.042;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.619;QD=18.28;ReadPosRankSum=-1.372;SNPEFF_AMINO_ACID_CHANGE=L240V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31355072_31355518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=COCH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542225    GT:AD:DP:GQ:PL    0/1:23,39:62:99:1163,0,681
14    31380191    rs3736742    T    G    226.95    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.085;QD=9.08;ReadPosRankSum=1.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366206    GT:AD:DP:GQ:PL    0/1:16,9:25:99:257,0,556
14    31380215    rs35462418    TA    T    496.30    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.207;DB;DP=34;FS=0.0;HRun=8;HaplotypeScore=111.1385;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=0.775;QD=14.6;ReadPosRankSum=1.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366206    GT:AD:DP:GQ:PL    0/1:12,22:34:99:535,0,331
14    31381351    rs2273171    T    C    1025.35    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=69;Dels=0.0;FS=6.814;HRun=0;HaplotypeScore=0.734;MQ=59.33;MQ0=0;MQRankSum=-0.174;QD=14.86;ReadPosRankSum=1.883;SNPEFF_AMINO_ACID_CHANGE=N387S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31381213_31381388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355683    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1055,0,1015
14    31388446    rs55956948    T    C    178.26    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.183;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=11.88;ReadPosRankSum=-0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355683    GT:AD:DP:GQ:PL    0/1:8,7:15:99:208,0,284
14    31404277    rs9322868    T    C    186.64    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.97;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355683    GT:AD:DP:GQ:PL    0/1:5,6:11:99:217,0,175
14    31405591    rs148364191    TGTAAA    T    563.02    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=4.188;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=140.1841;IndelType=D;MQ=54.83;MQ0=0;MQRankSum=-0.411;QD=20.85;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355683    GT:AD:DP:GQ:PL    0/1:16,11:27:99:602,0,1207
14    31424790    rs141450154    TA    T    198.60    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=36;FS=2.031;HRun=13;HaplotypeScore=191.5054;IndelType=D;MQ=57.31;MQ0=0;MQRankSum=-1.193;QD=5.52;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355683    GT:AD:DP:GQ:PL    0/1:17,18:36:99:238,0,218
14    31425457    rs17097614    A    T    1106.42    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.991;DB;DP=76;Dels=0.0;FS=3.655;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=-0.343;QD=14.56;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355683    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1136,0,1097
14    31535603    rs6571386    G    C    1121.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.32;MQ0=0;QD=33.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555417    GT:AD:DP:GQ:PL    1/1:0,34:34:87.26:1155,87,0
14    31535756    rs6571387    C    G    76.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555417    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:109,9,0
14    31538984    rs7155228    C    G    611.86    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.733;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.379;QD=14.23;ReadPosRankSum=0.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555417    GT:AD:DP:GQ:PL    0/1:24,19:43:99:642,0,809
14    31549745    rs11621299    T    G    697.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216366    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:730,57,0
14    31578762    rs17097735    C    T    338.04    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=39;Dels=0.0;FS=1.461;HRun=1;HaplotypeScore=0.9734;MQ=59.52;MQ0=0;MQRankSum=-0.308;QD=8.67;ReadPosRankSum=0.8;SNPEFF_AMINO_ACID_CHANGE=E2107;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31578603_31578804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399332    GT:AD:DP:GQ:PL    0/1:25,14:39:99:368,0,849
14    31582380    rs1315794    A    G    1018.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.84;SNPEFF_AMINO_ACID_CHANGE=L1454P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31582346_31582395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553957    GT:AD:DP:GQ:PL    1/1:0,31:31:81.24:1051,81,0
14    31582526    rs2273483    T    C    2604.52    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.022;DB;DP=173;Dels=0.0;FS=1.437;HRun=0;HaplotypeScore=1.99;MQ=59.6;MQ0=0;MQRankSum=0.94;QD=15.06;ReadPosRankSum=1.222;SNPEFF_AMINO_ACID_CHANGE=L1434;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31582483_31582690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553957    GT:AD:DP:GQ:PL    0/1:85,88:173:99:2635,0,2637
14    31597685    rs7157007    C    G    647.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261312    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:681,51,0
14    31598248    rs17097743    A    G    1318.27    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.01;DB;DP=85;Dels=0.0;FS=4.213;HRun=1;HaplotypeScore=0.9993;MQ=58.91;MQ0=0;MQRankSum=-0.57;QD=15.51;ReadPosRankSum=0.314;SNPEFF_AMINO_ACID_CHANGE=S1443;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31597818_31598654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399332    GT:AD:DP:GQ:PL    0/1:38,47:85:99:1348,0,1245
14    31610964    rs72670364    C    A    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556224    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,73
14    31617880    rs11845860    A    C    329.79    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.672;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.138;QD=11.78;ReadPosRankSum=-0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261312    GT:AD:DP:GQ:PL    0/1:15,13:28:99:360,0,558
14    31619392    rs11620816    T    C    1041.65    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=76;Dels=0.0;FS=2.02;HRun=0;HaplotypeScore=0.734;MQ=59.45;MQ0=0;MQRankSum=-0.336;QD=13.71;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=Q130;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31619205_31619427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553957    GT:AD:DP:GQ:PL    0/1:41,35:76:99:1072,0,1241
14    31637815    rs11625570    A    G    318.70    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.531;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=16.77;ReadPosRankSum=-1.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554471    GT:AD:DP:GQ:PL    0/1:9,10:19:99:349,0,308
14    31647241    rs2274201    G    A    718.21    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=5.227;DB;DP=51;Dels=0.0;FS=3.066;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.196;QD=14.08;ReadPosRankSum=-1.103;SNPEFF_AMINO_ACID_CHANGE=A120;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31647226_31647460;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HECTD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261312    GT:AD:DP:GQ:PL    0/1:26,25:51:99:748,0,685
14    31778080    rs144369949    C    CA    159.39    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.753;DB;DP=33;FS=0.0;HRun=13;HaplotypeScore=179.4364;IndelType=I;MQ=55.8;MQ0=0;MQRankSum=-1.411;QD=4.83;ReadPosRankSum=-1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:24,8:33:99:198,0,247
14    31782112    rs113193812    A    AAAAAG    2328.04    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.289;DB;DP=69;FS=2.235;HRun=0;HaplotypeScore=290.9397;IndelType=I;MQ=56.77;MQ0=0;MQRankSum=-1.837;QD=33.74;ReadPosRankSum=-0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:37,30:69:99:2367,0,1606
14    31787557    rs12323409    C    T    1010.04    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.796;DB;DP=75;Dels=0.0;FS=1.334;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.319;QD=13.47;ReadPosRankSum=0.719;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:38,37:75:99:1040,0,1257
14    31790886    rs28396248    T    G    901.19    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=2.626;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=-0.605;QD=17.0;ReadPosRankSum=0.388;SNPEFF_AMINO_ACID_CHANGE=N1257T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31790705_31790886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:22,31:53:99:931,0,676
14    31790917    rs17097814    A    G    655.09    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=2.02;DB;DP=37;Dels=0.0;FS=4.095;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.423;QD=17.71;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:14,23:37:99:685,0,397
14    31793053    rs72168257    GAT    G    452.87    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=1.762;DB;DP=28;FS=4.973;HRun=0;HaplotypeScore=95.1631;IndelType=D;MQ=59.17;MQ0=0;MQRankSum=-0.352;QD=16.17;ReadPosRankSum=1.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:13,15:28:99:492,0,278
14    31795361    rs3736917    A    G    1305.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.373;DB;DP=82;Dels=0.0;FS=9.982;HRun=0;HaplotypeScore=0.6651;MQ=59.72;MQ0=0;MQRankSum=-0.714;QD=15.93;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:41,41:82:99:1336,0,1383
14    31806943    rs4595710    T    C    213.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.683;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=13.36;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:8,8:16:99:244,0,279
14    31819047    rs3736918    C    T    1035.03    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.381;DB;DP=79;Dels=0.0;FS=3.084;HRun=2;HaplotypeScore=1.7356;MQ=60.0;MQ0=0;MQRankSum=-1.236;QD=13.1;ReadPosRankSum=0.583;SNPEFF_AMINO_ACID_CHANGE=V593M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31818995_31819185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439727    GT:AD:DP:GQ:PL    0/1:43,36:79:99:1065,0,1426
14    31819913    rs7158257    A    G    1130.35    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=78;Dels=0.0;FS=0.869;HRun=0;HaplotypeScore=0.0;MQ=60.27;MQ0=0;MQRankSum=2.591;QD=14.31;ReadPosRankSum=-0.877;SNPEFF_AMINO_ACID_CHANGE=L515;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31819818_31819923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439727    GT:AD:DP:GQ:PL    0/1:36,42:78:99:1160,0,1087
14    31819966    rs72055697    TTTTG    T    574.65    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=4.561;DB;DP=50;FS=3.163;HRun=0;HaplotypeScore=269.9157;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=-1.331;QD=11.49;ReadPosRankSum=-0.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:35,15:50:99:614,0,917
14    31828076    rs942907    A    C    1412.12    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.993;DB;DP=104;Dels=0.0;FS=0.758;HRun=0;HaplotypeScore=1.2434;MQ=59.15;MQ0=0;MQRankSum=-0.939;QD=13.58;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:58,46:104:99:1442,0,1781
14    31841162    rs5025288    T    C    215.81    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.2;MQ0=0;MQRankSum=-0.271;QD=16.6;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:5,8:13:99:246,0,129
14    31844285    rs12885363    C    T    275    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=13.75;ReadPosRankSum=-0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:10,10:20:99:305,0,334
14    31844402    rs10134212    T    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
14    31849524    rs4981841    T    A    149.62    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7882;MQ=58.45;MQ0=0;MQRankSum=0.058;QD=9.97;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:8,7:15:99:180,0,278
14    31857834    rs10147468    C    T    100.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.368;QD=12.62;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,135
14    31858025    rs3887865    C    T    1733.98    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.219;DB;DP=115;Dels=0.0;FS=3.113;HRun=1;HaplotypeScore=1.612;MQ=59.6;MQ0=0;MQRankSum=-1.701;QD=15.08;ReadPosRankSum=-0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    0/1:60,55:115:99:1764,0,2008
14    31863133    rs10138277    T    C    369.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:403,30,0
14    31864300    rs7142126    T    C    564.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:598,45,0
14    31864485    rs7141532    G    C    2150.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.65;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=P173A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_31864405_31864554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389961    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2184,162,0
14    31922408    rs34278949    G    A    74.70    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.67;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf126;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310850    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,115
14    32034147    rs3759779    A    T    592.85    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.787;DB;DP=33;Dels=0.0;FS=3.724;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=17.97;ReadPosRankSum=-0.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550005    GT:AD:DP:GQ:PL    0/1:14,19:33:99:623,0,462
14    32142544    rs35659584    A    AT    186.85    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.736;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=69.3144;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=0.297;QD=7.79;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281081    GT:AD:DP:GQ:PL    0/1:14,9:24:99:226,0,197
14    32142901    rs77139143    C    T    34.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.73;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550355    GT:AD:DP:GQ:PL    0/1:4,2:6:64.35:64,0,129
14    32142930    rs8013530    A    G    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550355    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
14    32295772    rs17379143    T    A    298.61    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.334;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.002;QD=13.57;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281081    GT:AD:DP:GQ:PL    0/1:9,13:22:99:329,0,315
14    32296018    rs1540425    A    G    471.43    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.217;QD=29.46;ReadPosRankSum=0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281081    GT:AD:DP:GQ:PL    1/1:1,15:16:2.13:501,2,0
14    32315901    rs8006872    A    G    315.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=57.66;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281081    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:348,27,0
14    32328164    rs3742923    G    T    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281081    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:84,6,0
14    32563640    rs8004384    A    G    2494.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.82;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555814    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2527,187,0
14    32741250    rs11627833    A    G    794.72    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.463;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=53.07;MQ0=0;MQRankSum=-1.104;QD=15.28;ReadPosRankSum=0.481;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-134E15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556746    GT:AD:DP:GQ:PL    0/1:24,28:52:99:825,0,674
14    33014327    rs11844955    C    T    134.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4326;MQ=60.0;MQ0=0;MQRankSum=-0.674;QD=8.97;ReadPosRankSum=2.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    0/1:10,5:15:99:165,0,362
14    33015014    rs7150894    G    A    2426.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=37.33;SNPEFF_AMINO_ACID_CHANGE=T143;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_33014436_33015655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553547    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2460,184,0
14    33046388    rs1950703    A    G    2108.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=E803;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_33046326_33046448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2142,166,0
14    33046471    rs768787    T    G    1441.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9025;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1474,111,0
14    33165051    rs3825754    G    C    80.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=16.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    0/1:2,3:5:56.19:111,0,56
14    33165084    rs3742927    A    T    192.78    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.38;QD=16.07;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    0/1:5,7:12:99:223,0,167
14    33165182    rs3742929    C    T    583.44    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.629;DB;DP=38;Dels=0.0;FS=3.297;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.687;QD=15.35;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    0/1:20,18:38:99:613,0,628
14    33242863    rs2273163    T    C    3466    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3466,259,0
14    33291583    rs34711402    G    A    1039.11    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.574;QD=15.99;ReadPosRankSum=1.01;SNPEFF_AMINO_ACID_CHANGE=V1522I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_33290608_33294021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    0/1:29,36:65:99:1069,0,974
14    33292743    rs2239647    A    C    961.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.957;MQ=59.3;MQ0=0;QD=29.13;SNPEFF_AMINO_ACID_CHANGE=G1908;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_33290608_33294021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    1/1:0,33:33:75.24:994,75,0
14    33293122    rs1051695    A    G    2048.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=N2035D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_33290608_33294021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2082,162,0
14    33293531    rs4647899    T    A    921.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=F2171Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_33290608_33294021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    1/1:0,28:28:75.22:955,75,0
14    33294042    rs2057121    G    A    2158.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280979    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2192,163,0
14    33525317    rs71448285    G    GA    192.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=12;FS=0.0;HRun=9;HaplotypeScore=24.1201;IndelType=I;MQ=62.65;MQ0=0;MQRankSum=1.708;QD=16.01;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341321    GT:AD:DP:GQ:PL    0/1:4,8:12:44.45:231,0,44
14    33836490    rs3831133    AAAG    A    362.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=60.6262;IndelType=D;MQ=58.36;MQ0=0;MQRankSum=0.933;QD=24.17;ReadPosRankSum=-0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341321    GT:AD:DP:GQ:PL    0/1:6,9:15:99:402,0,294
14    34149916    rs2297118    T    C    643.56    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=43;Dels=0.0;FS=4.058;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=14.97;ReadPosRankSum=-0.499;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341321    GT:AD:DP:GQ:PL    0/1:20,23:43:99:674,0,644
14    34149997    rs2297117    T    C    145.90    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.715;QD=10.42;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341321    GT:AD:DP:GQ:PL    0/1:6,8:14:99:176,0,204
14    34204634    rs67458622    T    C    183.34    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.27;QD=11.46;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346562    GT:AD:DP:GQ:PL    0/1:9,7:16:99:213,0,295
14    34243477    rs8019077    T    A    662.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346562    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:696,54,0
14    34263034    rs10536695    TAAA    T    462.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=15;HaplotypeScore=112.7507;IndelType=D;MQ=50.61;MQ0=0;QD=23.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346562    GT:AD:DP:GQ:PL    1/1:2,18:20:44.96:505,45,0
14    34396100    rs10137361    C    T    129.01    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.586;QD=8.06;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487915    GT:AD:DP:GQ:PL    0/1:11,5:16:99:159,0,410
14    34398078    rs1680705    T    C    127.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487915    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
14    34398101    rs1769604    G    C    198.24    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.32;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487915    GT:AD:DP:GQ:PL    0/1:1,6:7:18.94:228,0,19
14    34993863    rs5807778    A    ATGTGTGTGTGTG    1820.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=215.8433;IndelType=I;MQ=41.07;MQ0=0;QD=86.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EAPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555705    GT:AD:DP:GQ:PL    1/1:7,8:21:36.12:1862,36,0
14    35050586    rs4403967    G    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557265    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    35062166    rs12435717    T    C    424.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355110    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:457,33,0
14    35062312    rs12432539    C    T    1496.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=E103;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35062251_35062356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396526    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1530,111,0
14    35075022    rs7151774    G    T    522.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355110    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:556,42,0
14    35182348    rs72060495    GA    G    53.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=10;FS=3.332;HRun=12;HaplotypeScore=32.0896;IndelType=D;MQ=61.07;MQ0=0;MQRankSum=-1.221;QD=5.33;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298159    GT:AD:DP:GQ:PL    0/1:4,5:10:51.40:92,0,51
14    35182406    rs35219728    GATA    G    307.83    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=73.5342;IndelType=D;MQ=54.6;MQ0=0;MQRankSum=-1.78;QD=18.11;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298159    GT:AD:DP:GQ:PL    0/1:8,9:17:99:347,0,461
14    35209580    rs10130939    G    C    939.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.76;MQ0=1;QD=30.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-434O22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495231    GT:AD:DP:GQ:PL    1/1:0,31:31:75.21:972,75,0
14    35209891    rs59235701    G    A    307.07    MQFilter40    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=41;Dels=0.0;FS=1.77;HRun=0;HaplotypeScore=0.0;MQ=29.62;MQ0=12;MQRankSum=0.415;QD=7.49;ReadPosRankSum=-0.276;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-434O22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495231    GT:AD:DP:GQ:PL    0/1:24,17:41:99:337,0,329
14    35209986    rs9671638    G    A    185.07    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.81;MQ0=3;MQRankSum=-0.715;QD=13.22;ReadPosRankSum=-0.978;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-434O22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495231    GT:AD:DP:GQ:PL    0/1:6,8:14:86.93:215,0,87
14    35222623    rs3742371    T    C    75.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=49.17;MQ0=0;MQRankSum=1.754;QD=10.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543083    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,116
14    35223971    rs8009900    A    G    339.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.893;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.66;MQ0=0;MQRankSum=0.656;QD=16.97;ReadPosRankSum=-0.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557739    GT:AD:DP:GQ:PL    0/1:8,12:20:99:369,0,251
14    35227831    rs60358922    G    A    132.18    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=13.22;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    0/1:3,7:10:89.28:162,0,89
14    35227880    rs61981201    G    T    336.91    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-1.732;QD=12.48;ReadPosRankSum=-0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    0/1:15,12:27:99:367,0,505
14    35230906    rs17526787    G    A    322.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=4.427;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.101;QD=10.76;ReadPosRankSum=-0.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    0/1:18,12:30:99:353,0,510
14    35230980    rs45620534    C    T    893.82    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.322;DB;DP=79;Dels=0.0;FS=1.043;HRun=5;HaplotypeScore=1.8665;MQ=59.42;MQ0=0;MQRankSum=-0.497;QD=11.31;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=R1061K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35230963_35231429;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543083    GT:AD:DP:GQ:PL    0/1:43,36:79:99:924,0,1398
14    35231108    rs1044140    A    T    1225.88    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=3.023;DB;DP=88;Dels=0.0;FS=1.743;HRun=2;HaplotypeScore=3.9276;MQ=59.53;MQ0=0;MQRankSum=-0.115;QD=13.93;ReadPosRankSum=-1.756;SNPEFF_AMINO_ACID_CHANGE=N1018K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35230963_35231429;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543083    GT:AD:DP:GQ:PL    0/1:46,42:88:99:1256,0,1466
14    35240582    rs41301471    T    C    845.71    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.484;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.619;QD=12.81;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    0/1:38,28:66:99:876,0,1340
14    35240664    rs41309244    C    G    2678.44    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.874;DB;DP=196;Dels=0.0;FS=1.202;HRun=0;HaplotypeScore=4.0751;MQ=59.76;MQ0=0;MQRankSum=-2.826;QD=13.67;ReadPosRankSum=-1.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    0/1:107,89:196:99:2708,0,3152
14    35242633    rs6571688    G    T    252.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.53;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
14    35242700    rs3818801    C    T    310.25    HaplotypeScoreFilter13    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=26.6741;MQ=55.89;MQ0=0;MQRankSum=0.103;QD=9.7;ReadPosRankSum=0.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    0/1:21,11:32:99:340,0,715
14    35242709    rs10713079    CA    C    370.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.5;DB;DP=39;FS=0.0;HRun=16;HaplotypeScore=269.1986;IndelType=D;MQ=56.05;MQ0=0;MQRankSum=2.159;QD=9.25;ReadPosRankSum=1.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    1/1:7,24:39:41.14:412,41,0
14    35242828    rs2275145    G    A    1191.33    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=92;Dels=0.0;FS=4.036;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=0.581;QD=12.95;ReadPosRankSum=-0.086;SNPEFF_AMINO_ACID_CHANGE=D1002;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35242778_35242932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    0/1:51,41:92:99:1221,0,1515
14    35243006    rs2275146    G    A    228.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:261,21,0
14    35244950    rs3783317    A    G    175.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555273    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
14    35249171    rs75096261    G    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553385    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:75,0,30
14    35249324    rs17527243    A    G    736.79    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=58;Dels=0.0;FS=2.847;HRun=1;HaplotypeScore=2.4892;MQ=59.2;MQ0=0;MQRankSum=-2.134;QD=12.7;ReadPosRankSum=2.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553385    GT:AD:DP:GQ:PL    0/1:31,27:58:99:767,0,951
14    35252574    rs66648817    C    CT    32.22    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=9;FS=0.0;HRun=17;HaplotypeScore=96.8734;IndelType=I;MQ=55.96;MQ0=0;MQRankSum=-0.72;QD=3.58;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553385    GT:AD:DP:GQ:PL    0/1:3,5:9:13.16:71,0,13
14    35263983    rs17102745    T    C    1061.07    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=67;Dels=0.0;FS=3.497;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.677;QD=15.84;ReadPosRankSum=0.032;SNPEFF_AMINO_ACID_CHANGE=Q129;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35263955_35264093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543083    GT:AD:DP:GQ:PL    0/1:29,38:67:99:1091,0,994
14    35331288    rs17592803    G    A    1642.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.724;DB;DP=110;Dels=0.0;FS=0.751;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.09;QD=14.93;ReadPosRankSum=0.084;SNPEFF_AMINO_ACID_CHANGE=V118;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35331250_35331528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAZ1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358716    GT:AD:DP:GQ:PL    0/1:55,55:110:99:1672,0,1542
14    35343629    rs2145031    A    C    149.77    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=13.62;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-73E17.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556747    GT:AD:DP:GQ:PL    0/1:5,6:11:99:180,0,147
14    35469015    rs72680641    G    A    39.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.84;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553544    GT:AD:DP:GQ:PL    0/1:3,2:5:69.20:69,0,75
14    35476673    rs28456062    G    A    55.63    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=4.28;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555535    GT:AD:DP:GQ:PL    0/1:10,3:13:85.63:86,0,357
14    35477785    rs1712351    G    A    535.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555535    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:569,42,0
14    35497266    rs17510813    C    T    897.96    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=73;Dels=0.0;FS=3.025;HRun=1;HaplotypeScore=5.441;MQ=57.75;MQ0=0;MQRankSum=-0.402;QD=12.3;ReadPosRankSum=-0.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216774    GT:AD:DP:GQ:PL    0/1:42,31:73:99:928,0,1247
14    35546373    rs8011060    T    C    4175.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.6342;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=G119;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35546356_35546422;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000280987    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4175,322,0
14    35546452    rs17103013    A    G    1433.71    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=0.376;DB;DP=95;Dels=0.0;FS=2.061;HRun=0;HaplotypeScore=1.7803;MQ=59.8;MQ0=0;MQRankSum=1.083;QD=15.09;ReadPosRankSum=0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280987    GT:AD:DP:GQ:PL    0/1:47,48:95:99:1464,0,1443
14    35546498    rs8011242    T    A    1668.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280987    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1702,126,0
14    35547897    rs7154292    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280987    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
14    35550464    rs139237361    TAA    T    3149.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.0;HRun=2;HaplotypeScore=323.9627;IndelType=D;MQ=59.27;MQ0=0;QD=45.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553955    GT:AD:DP:GQ:PL    1/1:0,68:69:99:3192,199,0
14    35560539    rs17103034    T    A    250.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP2R3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554899    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
14    35565873    rs80012713    C    A    528.35    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.009;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.1291;MQ=59.21;MQ0=0;MQRankSum=-0.861;QD=9.97;ReadPosRankSum=1.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP2R3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554265    GT:AD:DP:GQ:PL    0/1:30,22:53:99:558,0,993
14    35576783    rs2273159    A    G    87.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP2R3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553282    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
14    35578990    rs72664814    A    G    302.60    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.354;DB;DP=27;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.024;QD=11.21;ReadPosRankSum=-0.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP2R3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553282    GT:AD:DP:GQ:PL    0/1:14,13:27:99:333,0,474
14    35579228    rs144725443    AGTTT    A    215.81    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=49.3304;IndelType=D;MQ=55.66;MQ0=0;MQRankSum=0.103;QD=19.62;ReadPosRankSum=1.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP2R3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261475    GT:AD:DP:GQ:PL    0/1:6,5:11:99:255,0,375
14    35585629    rs72664829    T    A    68.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM177A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555260    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
14    35591174    rs1056879    T    C    1168.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0391;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556711    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1201,93,0
14    35593599    rs2899830    C    G    138.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0391;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553978    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:171,12,0
14    35595842    rs79131050    C    T    52.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=5.84;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0391;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553978    GT:AD:DP:GQ:PL    0/1:6,3:9:82.52:83,0,221
14    35649897    .    T    C    570.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.254;DP=56;Dels=0.0;FS=1.297;HRun=1;HaplotypeScore=0.7887;MQ=59.59;MQ0=0;MQRankSum=0.094;QD=10.18;ReadPosRankSum=0.282;SNPEFF_AMINO_ACID_CHANGE=F25L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35649876_35649983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0391;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556912    GT:AD:DP:GQ:PL    0/1:32,24:56:99:600,0,1127
14    35732369    rs8017330    G    A    110.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=15.78;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0391;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250377    GT:AD:DP:GQ:PL    0/1:2,5:7:64.95:140,0,65
14    35736198    .    T    TAA    170.16    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DP=19;FS=0.0;HRun=13;HaplotypeScore=96.8569;IndelType=I;MQ=58.12;MQ0=0;MQRankSum=-0.312;QD=8.96;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0391;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250377    GT:AD:DP:GQ:PL    0/1:13,6:19:99:209,0,122
14    35743063    rs7218    T    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0391;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554896    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    35761573    rs2277460    C    A    311.71    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.489;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=18.34;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540871    GT:AD:DP:GQ:PL    0/1:7,10:17:99:342,0,227
14    35777358    rs8012896    T    G    283.02    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=17.69;ReadPosRankSum=1.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261479    GT:AD:DP:GQ:PL    0/1:6,10:16:99:313,0,198
14    35781881    rs17597246    A    G    254.53    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.382;QD=23.14;ReadPosRankSum=2.262;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554843    GT:AD:DP:GQ:PL    0/1:3,8:11:91.64:285,0,92
14    35781904    rs17597267    T    C    250.91    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.237;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=58.33;MQ0=0;MQRankSum=0.231;QD=17.92;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554843    GT:AD:DP:GQ:PL    0/1:4,9:14:90.59:281,0,91
14    35781938    rs80315070    G    T    218.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;MQRankSum=1.022;QD=12.12;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554843    GT:AD:DP:GQ:PL    0/1:10,8:18:99:248,0,343
14    35782300    rs17597281    C    G    1331.50    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.586;DB;DP=73;Dels=0.0;FS=9.865;HRun=1;HaplotypeScore=1.5449;MQ=59.68;MQ0=0;MQRankSum=0.508;QD=18.24;ReadPosRankSum=-0.698;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553688    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1361,0,997
14    35783706    rs77796720    G    A    275.71    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.182;QD=22.98;ReadPosRankSum=-0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553688    GT:AD:DP:GQ:PL    0/1:2,10:12:49.32:306,0,49
14    35871093    rs696    C    T    510.82    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.073;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.268;QD=18.92;ReadPosRankSum=0.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    0/1:12,15:27:99:541,0,411
14    35871217    rs8904    G    A    1518.15    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=3.827;DB;DP=156;Dels=0.0;FS=3.08;HRun=0;HaplotypeScore=1.445;MQ=58.51;MQ0=0;MQRankSum=-0.869;QD=9.73;ReadPosRankSum=1.661;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    0/1:98,57:156:99:1548,0,2631
14    35871407    rs1022714    A    G    894.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=47.61;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    1/1:0,28:28:78.19:928,78,0
14    35871441    rs70937092    A    AGTAAGCTATTAAAAAAAGG    4764.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=381.2113;IndelType=I;MQ=42.17;MQ0=0;QD=183.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    1/1:9,6:26:78.26:4764,78,0
14    35871960    rs2233419    G    A    598.27    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=57;Dels=0.0;FS=4.001;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.275;QD=10.5;ReadPosRankSum=-1.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    0/1:26,30:57:99:628,0,704
14    35872094    rs2233417    C    T    193.58    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.176;QD=9.22;ReadPosRankSum=-0.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    0/1:11,10:21:99:224,0,369
14    35872307    rs3138054    C    T    329.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.576;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.264;QD=18.31;ReadPosRankSum=-2.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    0/1:6,12:18:99:360,0,198
14    35872765    rs2233416    G    A    36.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,112
14    35872792    rs2233415    A    G    77.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.35;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553342    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:107,0,28
14    35872926    rs1050851    G    A    173.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=2.158;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=11.57;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=A102;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_35872896_35873004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216797    GT:AD:DP:GQ:PL    0/1:6,9:15:99:204,0,209
14    36003426    .    T    C    702.05    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=3.376;DP=49;Dels=0.0;FS=2.739;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.952;QD=14.33;ReadPosRankSum=-0.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258840    GT:AD:DP:GQ:PL    0/1:23,26:49:99:732,0,682
14    36004075    rs1958260    A    G    850.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.38;SNPEFF_AMINO_ACID_CHANGE=D206G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_36003248_36006260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307169    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:884,69,0
14    36010886    .    C    G    172.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=17.28;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307169    GT:AD:DP:GQ:PL    0/1:4,6:10:99:203,0,139
14    36096255    rs34349314    G    GA    222    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=25;FS=6.067;HRun=15;HaplotypeScore=135.5429;IndelType=I;MQ=43.82;MQ0=0;MQRankSum=-1.48;QD=8.88;ReadPosRankSum=-1.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258840    GT:AD:DP:GQ:PL    0/1:8,14:25:40.25:261,0,40
14    36121087    rs141910795    CA    C    1955.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.0;HRun=9;HaplotypeScore=228.526;IndelType=D;MQ=61.04;MQ0=0;QD=23.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258840    GT:AD:DP:GQ:PL    1/1:8,74:82:99:1997,219,0
14    36217581    rs7160735    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555828    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
14    36231816    rs11847872    G    A    727.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258840    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:760,57,0
14    36296014    rs1169023    T    G    90.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216807    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
14    36334030    rs12890607    G    C    546.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRMS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216807    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:580,45,0
14    36665556    rs1766121    A    G    1442.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL162511.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390782    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1475,114,0
14    36665604    rs1766122    G    A    2503.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL162511.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390782    GT:AD:DP:GQ:PL    1/1:1,79:80:99:2537,193,0
14    36768276    rs4900833    T    C    2063.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553877    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2096,156,0
14    36781037    rs7154340    C    T    954.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553549    GT:AD:DP:GQ:PL    1/1:0,25:25:75.22:988,75,0
14    36789729    rs3168891    T    G    1993.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=59.64;MQ0=0;QD=31.14;SNPEFF_AMINO_ACID_CHANGE=T3P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_36789659_36789867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553549    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2026,156,0
14    36789775    rs2899849    A    T    1371.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=25.41;SNPEFF_AMINO_ACID_CHANGE=L7H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_36789666_36789833;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318473    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1405,111,0
14    36789795    rs11558802    G    A    1289.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.25;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556427    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1323,99,0
14    36840650    rs3742592    A    T    3406.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9815;MQ=53.18;MQ0=0;QD=32.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL137226.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340350    GT:AD:DP:GQ:PL    1/1:0,103:104:99:3407,268,0
14    36840695    rs3742593    A    G    3075.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.08;MQ0=0;QD=35.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL137226.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340350    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3109,232,0
14    36841288    rs3861481    C    G    145.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.77;MQ0=0;QD=20.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL137226.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553589    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:178,18,0
14    36945922    rs7156370    A    G    197.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=32.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SFTA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521380    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:230,18,0
14    37051427    rs11624339    C    T    109.26    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=10.93;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX2-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258829    GT:AD:DP:GQ:PL    0/1:6,4:10:99:139,0,178
14    37051634    rs35669843    G    C    71.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=7.13;ReadPosRankSum=-1.447;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_37051438_37051812;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKX2-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258829    GT:AD:DP:GQ:PL    0/1:6,4:10:99:101,0,173
14    37131993    rs12883298    G    C    51.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=7.35;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361487    GT:AD:DP:GQ:PL    0/1:3,4:7:81.48:81,0,101
14    37132061    rs12883049    A    G    73.37    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=49.17;MQ0=0;MQRankSum=-2.219;QD=5.24;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361487    GT:AD:DP:GQ:PL    0/1:5,8:14:99:103,0,156
14    37132769    rs2236007    G    A    207.83    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=12;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.294;QD=17.32;ReadPosRankSum=-2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361487    GT:AD:DP:GQ:PL    0/1:3,9:12:82.47:238,0,82
14    37153163    rs1884217    A    G    115.99    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=16.57;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361487    GT:AD:DP:GQ:PL    0/1:2,5:7:57.20:146,0,57
14    37153185    rs10132292    T    A    64.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.22;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361487    GT:AD:DP:GQ:PL    0/1:3,4:7:94.51:95,0,108
14    37344229    rs5807914    A    AG    1923.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=147.0932;IndelType=I;MQ=61.1;MQ0=0;QD=44.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331299    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1966,126,0
14    37344275    rs712384    C    T    895.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331299    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:928,69,0
14    37737625    rs1950885    G    A    130.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554114    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
14    37737658    rs1950886    G    A    177.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554114    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
14    37738197    rs10145536    C    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    37838604    rs35983250    C    CA    516.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=10;HaplotypeScore=57.5507;IndelType=I;MQ=59.93;MQ0=0;QD=27.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327441    GT:AD:DP:GQ:PL    1/1:1,17:19:54:558,54,0
14    37993323    rs2180609    C    T    1110.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327441    GT:AD:DP:GQ:PL    1/1:0,29:29:84.28:1144,84,0
14    38016044    rs10151200    C    G    328.53    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.551;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=13.14;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545536    GT:AD:DP:GQ:PL    0/1:12,13:25:99:359,0,423
14    38016099    rs991786    C    T    594.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=46;Dels=0.0;FS=2.893;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=0.879;QD=12.92;ReadPosRankSum=-0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545536    GT:AD:DP:GQ:PL    0/1:23,23:46:99:624,0,696
14    38016179    rs5807955    G    GA    400.49    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.614;DB;DP=48;FS=0.0;HRun=8;HaplotypeScore=133.6148;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=8.34;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIPOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545536    GT:AD:DP:GQ:PL    0/1:31,16:48:99:440,0,583
14    38060646    rs33984772    C    T    292.25    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=29;Dels=0.0;FS=3.969;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.046;QD=10.08;ReadPosRankSum=1.198;SNPEFF_AMINO_ACID_CHANGE=S415N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_38060254_38061916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540786    GT:AD:DP:GQ:PL    0/1:15,14:29:99:322,0,426
14    38061742    rs7144658    C    T    302.97    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=11.65;ReadPosRankSum=-0.571;SNPEFF_AMINO_ACID_CHANGE=A50T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_38060254_38061916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540786    GT:AD:DP:GQ:PL    0/1:14,12:26:99:333,0,401
14    38064215    rs79519281    G    C    163.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.71;MQ0=0;MQRankSum=0.706;QD=9.07;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557418    GT:AD:DP:GQ:PL    0/1:9,9:18:99:193,0,277
14    38222291    rs4901176    G    C    2483.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553443    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2517,193,0
14    38256769    rs12878846    A    G    1346.81    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.435;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9157;MQ=59.57;MQ0=0;MQRankSum=-0.244;QD=12.59;ReadPosRankSum=-0.237;SNPEFF_AMINO_ACID_CHANGE=L1121;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_38256673_38256842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553443    GT:AD:DP:GQ:PL    0/1:55,51:106:99:1377,0,1642
14    38256994    rs35706871    C    T    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.82;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476979    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:69,0,63
14    38259876    rs12590844    G    A    390.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=27;Dels=0.0;FS=2.231;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.342;QD=14.45;ReadPosRankSum=0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476979    GT:AD:DP:GQ:PL    0/1:12,15:27:99:420,0,382
14    38260034    rs17107106    T    C    334.13    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.407;QD=9.28;ReadPosRankSum=-0.745;SNPEFF_AMINO_ACID_CHANGE=S1183;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_38259922_38260042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553443    GT:AD:DP:GQ:PL    0/1:20,16:36:99:364,0,663
14    38260089    rs7153624    C    T    797.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476979    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:830,60,0
14    38261757    rs1957584    G    A    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476979    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
14    38264358    rs969446    C    T    179.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=17.97;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476979    GT:AD:DP:GQ:PL    0/1:4,6:10:99:210,0,134
14    38265457    rs35791659    A    G    227.66    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=22.77;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267368    GT:AD:DP:GQ:PL    0/1:3,7:10:87.80:258,0,88
14    38266174    rs188958632    G    A    345.41    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=31;Dels=0.0;FS=1.561;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.258;QD=11.14;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267368    GT:AD:DP:GQ:PL    0/1:17,14:31:99:375,0,565
14    38273922    rs12896790    T    G    1847.03    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.976;DB;DP=137;Dels=0.0;FS=2.14;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.488;QD=13.48;ReadPosRankSum=-1.002;SNPEFF_AMINO_ACID_CHANGE=I1356S;SNPEFF_CODON_CHANGE=aTt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_38273885_38274019;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553443    GT:AD:DP:GQ:PL    0/1:72,65:137:99:1877,0,2217
14    38273954    rs17768654    G    A    1512.67    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.755;DB;DP=119;Dels=0.0;FS=0.7;HRun=1;HaplotypeScore=3.255;MQ=60.0;MQ0=0;MQRankSum=-0.483;QD=12.71;ReadPosRankSum=0.894;SNPEFF_AMINO_ACID_CHANGE=A1367T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_38273885_38274019;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553443    GT:AD:DP:GQ:PL    0/1:65,54:119:99:1543,0,2044
14    38276408    rs66617416    T    C    139.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=11.62;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554555    GT:AD:DP:GQ:PL    0/1:6,6:12:99:169,0,220
14    38276433    rs66496750    G    A    241.05    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.755;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.266;QD=12.69;ReadPosRankSum=-0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554555    GT:AD:DP:GQ:PL    0/1:10,9:19:99:271,0,356
14    38277999    rs4901284    C    T    1945.53    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.087;DB;DP=154;Dels=0.0;FS=2.876;HRun=0;HaplotypeScore=3.3288;MQ=60.0;MQ0=0;MQRankSum=-0.136;QD=12.63;ReadPosRankSum=0.791;SNPEFF_AMINO_ACID_CHANGE=T140I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_38277938_38278051;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267368    GT:AD:DP:GQ:PL    0/1:86,68:154:99:1976,0,2530
14    38295231    rs7154349    G    A    209.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267368    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
14    38295646    rs10483494    T    C    378.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267368    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:411,36,0
14    38310537    rs11629163    G    A    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267368    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
14    38310606    rs10151474    G    A    809.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267368    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:843,63,0
14    39502539    rs11418467    G    GA    2214.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=6;HaplotypeScore=161.4659;IndelType=I;MQ=57.88;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    1/1:8,59:67:99:2257,181,0
14    39502626    rs11283010    A    AAATAGAAC    1651.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=65.4273;IndelType=I;MQ=29.83;MQ0=0;QD=117.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    1/1:4,9:14:39.13:1693,39,0
14    39511952    rs3837584    CT    C    743.98    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=5.512;DB;DP=61;FS=9.005;HRun=3;HaplotypeScore=150.118;IndelType=D;MQ=60.18;MQ0=0;MQRankSum=1.44;QD=12.2;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    0/1:35,26:61:99:783,0,1289
14    39512122    rs4902326    T    A    1893.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8305;MQ=59.59;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1926,147,0
14    39517691    rs4902344    T    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:81,6,0
14    39517925    rs12895000    T    C    502.86    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.912;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.637;QD=14.79;ReadPosRankSum=-1.184;SNPEFF_AMINO_ACID_CHANGE=K354;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39517856_39517933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537403    GT:AD:DP:GQ:PL    0/1:14,20:34:99:533,0,430
14    39531281    rs3742354    T    C    39.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553925    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:69,0,32
14    39532492    rs55993688    T    C    61.22    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=12;Dels=0.0;FS=2.932;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.74;QD=5.1;ReadPosRankSum=0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553925    GT:AD:DP:GQ:PL    0/1:9,3:12:91.22:91,0,261
14    39543508    rs12164875    T    C    217.50    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.48;MQ0=0;MQRankSum=-0.268;QD=7.77;ReadPosRankSum=-1.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    0/1:15,13:28:99:247,0,550
14    39543814    .    T    TAAG    965.36    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.834;DP=29;FS=0.0;HRun=0;HaplotypeScore=97.3971;IndelType=I;MQ=52.38;MQ0=0;MQRankSum=-1.741;QD=33.29;ReadPosRankSum=-1.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    0/1:18,11:29:99:1004,0,516
14    39554893    rs111753233    TACACACACACACACAC    T    886.46    PASS    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.272;DB;DP=33;FS=3.882;HRun=0;HaplotypeScore=529.4878;IndelType=D;MQ=46.62;MQ0=0;MQRankSum=-1.202;QD=26.86;ReadPosRankSum=-0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556595    GT:AD:DP:GQ:PL    0/1:25,7:33:99:925,0,2408
14    39556185    rs8018720    G    C    1347.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=L182V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39556133_39556212;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545328    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1380,102,0
14    39562619    rs2180217    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553970    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
14    39565403    rs3818163    T    A    792.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=37.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:826,60,0
14    39565453    rs1964842    A    G    165.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SEC23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307712    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
14    39583481    rs2277458    A    G    392.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.56;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250379    GT:AD:DP:GQ:PL    1/1:0,16:16:30.10:426,30,0
14    39587348    rs10136536    A    G    150.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=16.73;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250379    GT:AD:DP:GQ:PL    0/1:4,5:9:99:181,0,135
14    39591565    rs61692397    C    CT    109.21    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=9;HaplotypeScore=16.4381;IndelType=I;MQ=41.96;MQ0=0;MQRankSum=0.736;QD=18.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250379    GT:AD:DP:GQ:PL    0/1:1,5:6:8.01:148,0,8
14    39601190    rs74640611    G    T    146.39    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.09;DB;DP=86;Dels=0.0;FS=95.692;HRun=2;HaplotypeScore=20.3891;MQ=50.09;MQ0=0;MQRankSum=-2.674;QD=1.7;ReadPosRankSum=2.041;SNPEFF_AMINO_ACID_CHANGE=C206F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39601162_39601272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250379    GT:AD:DP:GQ:PL    0/1:41,45:86:99:176,0,1054
14    39603156    rs10130972    C    T    76.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.7;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250379    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,101
14    39605542    rs9322993    T    C    288.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524781    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
14    39620788    rs8003485    A    T    245.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRAPPC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554018    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
14    39620936    rs8003807    C    T    1692.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8824;MQ=59.61;MQ0=0;QD=28.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRAPPC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554018    GT:AD:DP:GQ:PL    1/1:0,55:59:99:1726,135,0
14    39623533    rs12147991    T    C    471.25    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.103;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.889;QD=15.2;ReadPosRankSum=0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRAPPC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330149    GT:AD:DP:GQ:PL    0/1:15,16:31:99:501,0,450
14    39627433    rs35270180    G    A    443.08    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.041;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.298;QD=18.46;ReadPosRankSum=-0.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRAPPC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330149    GT:AD:DP:GQ:PL    0/1:9,15:24:99:473,0,266
14    39627695    rs9322994    C    T    210.34    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.123;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.109;QD=10.02;ReadPosRankSum=-0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRAPPC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330149    GT:AD:DP:GQ:PL    0/1:13,8:21:99:240,0,455
14    39627747    rs761804    A    G    206.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TRAPPC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330149    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
14    39644498    rs1061583    G    A    403.16    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=16.8;ReadPosRankSum=-0.179;SNPEFF_AMINO_ACID_CHANGE=V5;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39644417_39644596;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216832    GT:AD:DP:GQ:PL    0/1:9,15:24:99:433,0,263
14    39645863    rs2252040    G    A    541.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554117    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:575,42,0
14    39647188    rs68193573    T    A    1142.10    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=104;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9734;MQ=59.56;MQ0=0;MQRankSum=-0.063;QD=10.98;ReadPosRankSum=0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554117    GT:AD:DP:GQ:PL    0/1:49,55:104:99:1172,0,1626
14    39650234    rs2180792    A    T    2213.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=T441S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39649707_39652422;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216832    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2247,169,0
14    39651193    rs532    A    G    361.37    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.84;MQ0=0;MQRankSum=0.0;QD=18.07;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553331    GT:AD:DP:GQ:PL    0/1:7,13:20:99:391,0,221
14    39716808    rs3825549    T    C    576.23    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=3.412;DB;DP=53;Dels=0.0;FS=3.933;HRun=2;HaplotypeScore=1.7998;MQ=60.0;MQ0=0;MQRankSum=-0.971;QD=10.87;ReadPosRankSum=-0.882;SNPEFF_AMINO_ACID_CHANGE=S343P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39716115_39717407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556784    GT:AD:DP:GQ:PL    0/1:28,25:53:99:606,0,769
14    39734473    rs17693279    G    A    36.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.04;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-407N17.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553728    GT:AD:DP:GQ:PL    0/1:4,2:6:66.24:66,0,105
14    39736680    rs7140561    T    C    364.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.08;SNPEFF_AMINO_ACID_CHANGE=V6A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39736350_39736726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:398,30,0
14    39748480    rs7158558    G    A    1723.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.07;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1757,132,0
14    39762347    rs2025029    T    C    300.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:333,24,0
14    39762369    rs8018990    A    C    534.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:568,42,0
14    39763006    rs956109    T    C    134.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554392    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
14    39764007    rs12432397    C    G    713.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554392    GT:AD:DP:GQ:PL    1/1:0,26:26:63.18:746,63,0
14    39773435    rs3831108    A    AT    629.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=6;HaplotypeScore=35.588;IndelType=I;MQ=60.63;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:671,51,0
14    39773639    rs2274398    G    T    477.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:511,39,0
14    39777676    rs1950952    G    C    2145.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.632;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-1.182;QD=34.05;ReadPosRankSum=-0.247;SNPEFF_AMINO_ACID_CHANGE=E280Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39777653_39777791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000557038    GT:AD:DP:GQ:PL    1/1:1,62:63:99:2178,120,0
14    39784014    rs2415539    A    G    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9916;MQ=38.39;MQ0=0;QD=1.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:0,27:27:6.02:67,6,0
14    39784042    rs2415540    A    G    45.75    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3001;MQ=36.44;MQ0=0;MQRankSum=0.919;QD=2.69;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:1,16:17:8.98:78,9,0
14    39784965    rs10150863    G    T    2201.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.01;FS=0.0;HRun=7;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556593    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2234,187,0
14    39796048    rs112310335    GT    G    1631.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=9;HaplotypeScore=177.7417;IndelType=D;MQ=60.8;MQ0=0;QD=24.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:6,61:67:99:1674,183,0
14    39815250    rs3831107    TTTC    T    1010.52    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=5.647;DB;DP=69;FS=3.721;HRun=0;HaplotypeScore=269.2511;IndelType=D;MQ=58.64;MQ0=0;MQRankSum=0.063;QD=14.65;ReadPosRankSum=0.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    0/1:43,26:69:99:1050,0,2200
14    39816781    rs12882375    C    T    173.15    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.143;QD=15.74;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    0/1:5,6:11:99:203,0,151
14    39818145    rs1060878    G    A    2106.41    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.037;DB;DP=150;Dels=0.0;FS=0.708;HRun=1;HaplotypeScore=0.734;MQ=59.72;MQ0=0;MQRankSum=-0.637;QD=14.04;ReadPosRankSum=-1.626;SNPEFF_AMINO_ACID_CHANGE=G1273R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39817947_39818181;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-407N17.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553728    GT:AD:DP:GQ:PL    0/1:74,76:150:99:2136,0,2314
14    39818222    rs7156249    G    T    1502.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280083    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1536,126,0
14    39856043    rs10146207    G    C    900    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341502    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:933,72,0
14    39870296    rs10146622    T    C    265.84    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=20.45;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298097    GT:AD:DP:GQ:PL    0/1:5,8:13:99:296,0,162
14    39871017    rs7156962    T    C    527.72    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.503;DB;DP=37;Dels=0.0;FS=2.966;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.965;QD=14.26;ReadPosRankSum=0.997;SNPEFF_AMINO_ACID_CHANGE=K253;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_39870380_39871065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298097    GT:AD:DP:GQ:PL    0/1:19,18:37:99:558,0,592
14    39871159    rs71435659    AT    A    149.97    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=25.9625;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=-0.572;QD=18.75;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298097    GT:AD:DP:GQ:PL    0/1:2,6:8:60.01:189,0,60
14    39871742    rs7158282    T    C    177.30    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.55;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.807;QD=7.39;ReadPosRankSum=0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298097    GT:AD:DP:GQ:PL    0/1:15,9:24:99:207,0,529
14    44589434    rs11620704    A    G    1655.73    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6648;MQ=59.02;MQ0=0;MQRankSum=1.434;QD=13.8;ReadPosRankSum=-1.169;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-305B6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555080    GT:AD:DP:GQ:PL    0/1:55,65:120:99:1686,0,1773
14    44973638    rs412408    C    T    144.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=14.42;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537803    GT:AD:DP:GQ:PL    0/1:4,6:10:99:174,0,130
14    44974189    rs11621923    C    A    106.96    MQFilter40    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.12;MQ0=9;MQRankSum=1.134;QD=5.09;ReadPosRankSum=1.239;SNPEFF_AMINO_ACID_CHANGE=A561S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_44973713_44974383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537803    GT:AD:DP:GQ:PL    0/1:16,5:21:99:137,0,139
14    44974922    rs3825632    A    T    694.05    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.857;DB;DP=47;Dels=0.0;FS=4.41;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.011;QD=14.77;ReadPosRankSum=-0.695;SNPEFF_AMINO_ACID_CHANGE=D423E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_44973545_44976482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340446    GT:AD:DP:GQ:PL    0/1:26,21:47:99:724,0,882
14    44974966    rs1959379    G    A    941.61    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.445;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=0.859;QD=14.05;ReadPosRankSum=-1.173;SNPEFF_AMINO_ACID_CHANGE=P409S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_44973545_44976482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340446    GT:AD:DP:GQ:PL    0/1:33,34:67:99:972,0,1097
14    44975052    rs3825630    A    G    1801.04    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=-1.236;QD=13.05;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=L380P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_44973545_44976482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340446    GT:AD:DP:GQ:PL    0/1:73,65:138:99:1831,0,2289
14    44975147    rs11623175    A    G    2027.71    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=140;Dels=0.0;FS=1.393;HRun=1;HaplotypeScore=7.5278;MQ=59.84;MQ0=0;MQRankSum=0.099;QD=14.48;ReadPosRankSum=0.31;SNPEFF_AMINO_ACID_CHANGE=A348;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_44973545_44976482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340446    GT:AD:DP:GQ:PL    0/1:71,69:140:99:2058,0,2155
14    44975606    rs3809429    G    T    1089.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=98;Dels=0.0;FS=2.672;HRun=1;HaplotypeScore=3.0503;MQ=59.57;MQ0=0;MQRankSum=1.7;QD=11.11;ReadPosRankSum=-0.164;SNPEFF_AMINO_ACID_CHANGE=H195Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_44973545_44976482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340446    GT:AD:DP:GQ:PL    0/1:56,42:98:99:1119,0,1910
14    44976241    rs11629125    T    A    699.38    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=2.585;DB;DP=59;Dels=0.0;FS=1.616;HRun=1;HaplotypeScore=2.516;MQ=60.0;MQ0=0;MQRankSum=0.224;QD=11.85;ReadPosRankSum=2.245;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537803    GT:AD:DP:GQ:PL    0/1:35,24:59:99:729,0,1138
14    45468761    rs17115735    C    T    316.66    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=16;Dels=0.0;FS=5.051;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=19.79;ReadPosRankSum=-1.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555945    GT:AD:DP:GQ:PL    0/1:5,11:16:99:347,0,155
14    45513743    rs111614438    C    CA    140.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=11;HaplotypeScore=22.1974;IndelType=I;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM179B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361462    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:183,18,0
14    45579253    .    G    T    1479.90    FSFilter60    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.162;DP=137;Dels=0.0;FS=185.175;HRun=2;HaplotypeScore=10.9598;MQ=46.15;MQ0=0;MQRankSum=-5.319;QD=10.8;ReadPosRankSum=3.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355765    GT:AD:DP:GQ:PL    0/1:52,83:137:99:1510,0,1284
14    45579256    .    C    T    303.99    FSFilter60;HaplotypeScoreFilter13    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.726;DP=135;Dels=0.0;FS=75.675;HRun=2;HaplotypeScore=18.407;MQ=47.01;MQ0=0;MQRankSum=-6.362;QD=2.25;ReadPosRankSum=3.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355765    GT:AD:DP:GQ:PL    0/1:59,76:135:99:334,0,1829
14    45610117    rs170542    T    C    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554030    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
14    45669014    .    T    C    1058.81    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=0.468;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.197;QD=15.57;ReadPosRankSum=-0.049;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIS18BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310806    GT:AD:DP:GQ:PL    0/1:31,37:68:99:1089,0,989
14    45693929    rs75790782    C    T    589.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.911;DB;DP=44;Dels=0.0;FS=3.432;HRun=0;HaplotypeScore=1.7172;MQ=59.48;MQ0=0;MQRankSum=0.207;QD=13.39;ReadPosRankSum=0.134;SNPEFF_AMINO_ACID_CHANGE=V621I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_45693121_45693949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIS18BP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310806    GT:AD:DP:GQ:PL    0/1:22,22:44:99:619,0,691
14    45696752    rs35448855    G    GA    48.78    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=19;FS=0.0;HRun=16;HaplotypeScore=118.8234;IndelType=I;MQ=57.53;MQ0=0;MQRankSum=0.705;QD=2.57;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIS18BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453142    GT:AD:DP:GQ:PL    0/1:13,6:19:87.81:88,0,109
14    45700409    rs61741592    C    T    2364.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_AMINO_ACID_CHANGE=R510Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_45700344_45700501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIS18BP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310806    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2397,175,0
14    47121018    rs139502430    G    GC    341.85    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.758;DB;DP=23;FS=0.0;HRun=4;HaplotypeScore=49.6703;IndelType=I;MQ=59.94;MQ0=0;MQRankSum=0.46;QD=14.86;ReadPosRankSum=-0.722;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_47120222_47121028;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298283    GT:AD:DP:GQ:PL    0/1:12,11:23:99:381,0,305
14    47314938    rs1388568    C    T    431.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.622;DB;DP=31;Dels=0.0;FS=3.163;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.249;QD=13.91;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    0/1:15,15:31:99:461,0,451
14    47315127    rs1388567    G    A    660.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:694,51,0
14    47324127    rs3007133    G    A    520.14    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=3.876;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.656;QD=20.81;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    0/1:9,16:25:99:550,0,258
14    47343536    rs3007095    G    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
14    47530841    rs7147260    A    C    144.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=14.46;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,179
14    47530845    rs7147741    G    C    329.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:363,27,0
14    47566475    rs10140596    A    T    40.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=6.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    0/1:2,4:6:70.37:70,0,70
14    47601130    rs192663312    T    C    540.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.642;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=15.01;ReadPosRankSum=-1.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    0/1:18,18:36:99:570,0,657
14    47687112    rs12886776    G    C    429.38    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.181;QD=20.45;ReadPosRankSum=0.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486952    GT:AD:DP:GQ:PL    0/1:8,13:21:99:459,0,260
14    47687187    rs8011854    A    C    2045.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486952    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2079,156,0
14    47770498    rs112839963    CCA    C    63.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=25.1576;IndelType=D;MQ=62.65;MQ0=0;QD=8.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MDGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357362    GT:AD:DP:GQ:PL    1/1:3,5:8:9.03:105,9,0
14    50044392    rs2883438    T    C    2428.21    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=4.004;DB;DP=162;Dels=0.0;FS=2.811;HRun=0;HaplotypeScore=3.6002;MQ=60.0;MQ0=0;MQRankSum=-0.232;QD=14.99;ReadPosRankSum=-0.117;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396020    GT:AD:DP:GQ:PL    0/1:75,87:162:99:2458,0,2183
14    50065717    rs2281836    G    C    36.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.14;ReadPosRankSum=-0.72;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_14_50065415_50065921;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298288    GT:AD:DP:GQ:PL    0/1:4,2:6:66.83:67,0,103
14    50066796    rs28405032    T    A    265.38    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=29;Dels=0.0;FS=1.596;HRun=0;HaplotypeScore=0.0;MQ=56.75;MQ0=0;MQRankSum=1.271;QD=9.15;ReadPosRankSum=-0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298288    GT:AD:DP:GQ:PL    0/1:18,11:29:99:295,0,466
14    50067605    rs4127814    C    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.09;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298288    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:71,0,69
14    50069282    rs2354444    A    T    199.23    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=28.46;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298288    GT:AD:DP:GQ:PL    0/1:1,6:7:21.16:229,0,21
14    50074014    rs2354445    G    T    659.37    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8136;MQ=59.34;MQ0=0;MQRankSum=1.197;QD=18.84;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298288    GT:AD:DP:GQ:PL    0/1:14,20:35:99:689,0,421
14    50080871    rs6572592    G    A    131.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.718;QD=10.98;ReadPosRankSum=-0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL36AL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298289    GT:AD:DP:GQ:PL    0/1:6,6:12:99:162,0,194
14    50085363    rs17121611    C    T    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298288    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
14    50092471    rs9989177    T    C    1923.88    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=122;Dels=0.0;FS=2.314;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=15.77;ReadPosRankSum=0.341;SNPEFF_AMINO_ACID_CHANGE=D720G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50091892_50092766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406043    GT:AD:DP:GQ:PL    0/1:62,60:122:99:1954,0,2113
14    50094913    rs2985696    C    A    173.23    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.522;DB;DP=29;Dels=0.0;FS=6.689;HRun=0;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;MQRankSum=0.259;QD=5.97;ReadPosRankSum=-1.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305386    GT:AD:DP:GQ:PL    0/1:20,9:29:99:203,0,638
14    50100386    rs2985687    T    C    648.34    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.451;DB;DP=52;Dels=0.0;FS=3.997;HRun=0;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=1.24;QD=12.47;ReadPosRankSum=-0.615;SNPEFF_AMINO_ACID_CHANGE=T494;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50100005_50101948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298292    GT:AD:DP:GQ:PL    0/1:28,23:52:99:678,0,770
14    50101370    rs2985685    G    A    393.70    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.187;DB;DP=33;Dels=0.0;FS=10.692;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=11.93;ReadPosRankSum=0.09;SNPEFF_AMINO_ACID_CHANGE=A166;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50100005_50101948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298292    GT:AD:DP:GQ:PL    0/1:18,15:33:99:424,0,556
14    50101682    rs2985684    C    G    60.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.76;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=E62D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50100005_50101948;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298292    GT:AD:DP:GQ:PL    0/1:5,4:9:90.79:91,0,178
14    50175792    rs11157703    T    C    332.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359332    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:365,30,0
14    50195679    rs4301946    A    G    2208.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=31.55;SNPEFF_AMINO_ACID_CHANGE=T201;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50195644_50195727;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359332    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2242,175,0
14    50199337    rs67928425    A    AT    245.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=65.5255;IndelType=I;MQ=58.77;MQ0=0;QD=24.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553274    GT:AD:DP:GQ:PL    1/1:1,9:10:27.07:288,27,0
14    50199375    rs10146753    A    C    830.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=37.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553274    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:864,63,0
14    50199680    rs10136379    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553274    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
14    50206702    rs4898631    G    A    251.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359332    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
14    50241205    rs66520673    TAGA    T    692.56    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=3.438;DB;DP=42;FS=2.304;HRun=0;HaplotypeScore=274.4158;IndelType=D;MQ=58.97;MQ0=0;MQRankSum=1.451;QD=16.49;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298307    GT:AD:DP:GQ:PL    0/1:23,19:42:99:732,0,1248
14    50241258    rs4499141    A    C    2704.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298307    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2737,205,0
14    50244835    rs4900949    C    T    1148.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553703    GT:AD:DP:GQ:PL    1/1:0,30:31:87.27:1182,87,0
14    50246764    rs4488363    A    T    32.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553538    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:63,6,0
14    50247290    rs4900952    G    T    187.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553538    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:221,18,0
14    50251369    rs10143621    A    G    1564    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=3.4779;MQ=59.56;MQ0=0;QD=30.08;SNPEFF_AMINO_ACID_CHANGE=N1030;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50250532_50251431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545773    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1597,120,0
14    50251888    rs8009346    C    T    1202.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298307    GT:AD:DP:GQ:PL    1/1:0,32:32:90.30:1236,90,0
14    50266091    rs68063911    GA    G    318.43    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=125.9961;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=-1.064;QD=15.92;ReadPosRankSum=1.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555411    GT:AD:DP:GQ:PL    0/1:9,11:20:99:357,0,310
14    50266095    rs35690553    G    A    345.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=10.6316;MQ=60.51;MQ0=0;QD=16.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555411    GT:AD:DP:GQ:PL    1/1:0,21:21:30.09:379,30,0
14    50267424    .    T    TA    836.66    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.666;DP=46;FS=1.253;HRun=1;HaplotypeScore=106.7761;IndelType=I;MQ=60.21;MQ0=0;MQRankSum=1.306;QD=18.19;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298310    GT:AD:DP:GQ:PL    0/1:24,22:46:99:876,0,722
14    50280577    rs3126194    T    C    190.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298310    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:223,18,0
14    50280688    rs3126195    T    A    1111.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298310    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1145,87,0
14    50298153    rs11365862    AT    A    330.35    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DB;DP=38;FS=0.0;HRun=10;HaplotypeScore=96.8752;IndelType=D;MQ=61.41;MQ0=0;MQRankSum=2.44;QD=8.69;ReadPosRankSum=1.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL627171.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358799    GT:AD:DP:GQ:PL    0/1:20,18:38:99:369,0,399
14    50298962    rs3100906    T    A    1605.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=S215C;SNPEFF_CODON_CHANGE=Agc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50298925_50298995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545773    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1638,120,0
14    50299051    rs113486836    CT    C    178.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.488;DB;DP=22;FS=0.0;HRun=14;HaplotypeScore=141.6335;IndelType=D;MQ=55.66;MQ0=0;MQRankSum=1.24;QD=8.13;ReadPosRankSum=1.488;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL627171.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358799    GT:AD:DP:GQ:PL    1/1:9,10:22:34.86:221,35,0
14    50300310    rs3100904    A    G    274.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=34.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL627171.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358799    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:307,24,0
14    50319327    rs3126160    T    C    259.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298310    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:293,21,0
14    50319499    rs3100887    G    T    606.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEMF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554162    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:639,48,0
14    50459609    rs10134002    T    C    325.24    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.256;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.17;MQ0=0;MQRankSum=1.48;QD=11.62;ReadPosRankSum=0.946;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399206    GT:AD:DP:GQ:PL    0/1:15,13:28:99:355,0,428
14    50550242    rs2355666    C    T    384.97    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.385;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.523;QD=16.74;ReadPosRankSum=-0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf183;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305273    GT:AD:DP:GQ:PL    0/1:11,12:23:99:415,0,379
14    50557968    rs10873032    C    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf183;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305273    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
14    50582321    rs12895760    G    A    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:70,0,29
14    50583083    rs11157729    G    T    393.51    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.263;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.353;QD=12.69;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=A63D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50583005_50583297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL21D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395859    GT:AD:DP:GQ:PL    0/1:15,16:31:99:423,0,461
14    50585248    rs2227276    C    T    711.77    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=1.015;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.708;QD=18.73;ReadPosRankSum=1.385;SNPEFF_AMINO_ACID_CHANGE=P1238;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50585028_50585571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543680    GT:AD:DP:GQ:PL    0/1:13,25:38:99:742,0,340
14    50585574    rs75654803    C    CA    159.18    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.999;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=76.966;IndelType=I;MQ=58.84;MQ0=0;MQRankSum=-1.111;QD=6.63;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:14,9:24:99:198,0,174
14    50596862    rs3759597    T    C    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
14    50597012    rs1955930    T    C    45.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.03;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:1,2:3:13.67:75,0,14
14    50600995    rs28565912    A    T    1736.24    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.116;DB;DP=107;Dels=0.0;FS=2.073;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.577;QD=16.23;ReadPosRankSum=0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:51,56:107:99:1766,0,1631
14    50601078    rs12882504    C    T    465.91    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.756;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.855;QD=14.12;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:17,16:33:99:496,0,600
14    50605158    rs7147778    C    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    50605267    rs35961944    A    AT    153.33    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=32;FS=2.674;HRun=12;HaplotypeScore=195.278;IndelType=I;MQ=55.52;MQ0=0;MQRankSum=1.342;QD=4.79;ReadPosRankSum=-0.726;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:22,9:32:99:192,0,348
14    50605507    rs71703941    T    TA    111.28    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=22;FS=0.0;HRun=13;HaplotypeScore=96.8574;IndelType=I;MQ=56.78;MQ0=0;MQRankSum=0.637;QD=5.06;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:15,7:22:99:150,0,120
14    50606897    rs2024808    A    G    311.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:344,27,0
14    50611845    rs2064667    C    T    1132.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,31:31:87.29:1166,87,0
14    50612401    rs1014879    T    C    555.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:589,45,0
14    50612414    rs726797    C    T    516.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:550,42,0
14    50612457    rs726798    C    T    241.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
14    50616878    rs2229869    G    A    1560.77    PASS    AB=0.337;AC=1;AF=0.50;AN=2;BaseQRankSum=3.048;DB;DP=83;Dels=0.0;FS=6.177;HRun=0;HaplotypeScore=1.7172;MQ=59.72;MQ0=0;MQRankSum=0.708;QD=18.8;ReadPosRankSum=0.679;SNPEFF_AMINO_ACID_CHANGE=N711;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50616726_50616948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543680    GT:AD:DP:GQ:PL    0/1:28,55:83:99:1591,0,758
14    50619682    rs111310052    CA    C    104.74    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=34.18;IndelType=D;MQ=60.77;MQ0=0;MQRankSum=0.225;QD=7.48;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555794    GT:AD:DP:GQ:PL    0/1:6,8:14:99:144,0,141
14    50619927    rs11628935    A    G    686.30    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=47;Dels=0.0;FS=1.738;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.503;QD=14.6;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555794    GT:AD:DP:GQ:PL    0/1:25,22:47:99:716,0,764
14    50623657    rs3736759    G    A    31.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,3:3:5.99:62,6,0
14    50626836    rs4900992    C    T    942.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:975,72,0
14    50628481    rs12717405    C    A    213.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.66;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:247,21,0
14    50641054    rs67214612    TTAAA    T    249.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=25.6461;IndelType=D;MQ=49.96;MQ0=0;QD=49.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:291,15,0
14    50641347    rs10782418    T    G    439.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:473,36,0
14    50649088    rs2024811    C    T    148.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=14.87;ReadPosRankSum=-0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556469    GT:AD:DP:GQ:PL    0/1:5,5:10:99:179,0,178
14    50655146    rs139780957    CTATT    C    710.62    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.143;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=79.6927;IndelType=D;MQ=39.12;MQ0=0;MQRankSum=-1.985;QD=44.41;ReadPosRankSum=-1.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:2,14:16:99:750,0,114
14    50666263    rs1955924    C    T    60.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.01;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555666    GT:AD:DP:GQ:PL    0/1:1,3:4:30.21:90,0,30
14    50667526    rs6572648    G    A    380.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556452    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:414,30,0
14    50670965    rs1075537    G    C    4065.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.8;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    1/1:0,113:113:99:4066,298,0
14    50671133    rs12888783    A    G    1365.54    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.256;DB;DP=124;Dels=0.0;FS=0.979;HRun=0;HaplotypeScore=2.4534;MQ=59.63;MQ0=0;MQRankSum=1.066;QD=11.01;ReadPosRankSum=-0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216373    GT:AD:DP:GQ:PL    0/1:68,56:124:99:1396,0,2341
14    50704331    rs4901000    C    T    2225.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=A437T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50704281_50704443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2258,171,0
14    50713679    rs7143186    T    G    656.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    1/1:0,20:20:60.16:690,60,0
14    50732042    rs12432673    G    A    560.85    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.46;QD=18.09;ReadPosRankSum=1.781;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557131    GT:AD:DP:GQ:PL    0/1:13,18:31:99:591,0,403
14    50735846    .    G    GA    737.63    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.852;DP=63;FS=1.422;HRun=7;HaplotypeScore=163.0344;IndelType=I;MQ=59.98;MQ0=0;MQRankSum=0.649;QD=11.71;ReadPosRankSum=-0.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557131    GT:AD:DP:GQ:PL    0/1:37,25:63:99:777,0,669
14    50750577    rs12433038    A    G    3066.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=32.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3100,244,0
14    50769327    rs2297993    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
14    50769455    rs2297994    G    T    493.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:526,39,0
14    50769717    rs2297995    G    A    3483.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.314;MQ=59.56;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=I53;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50769620_50769735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3483,253,0
14    50769868    rs1962578    G    A    92.47    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=57.66;MQ0=0;MQRankSum=1.568;QD=9.25;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    0/1:6,4:10:99:122,0,200
14    50769901    rs1974327    A    G    170.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
14    50778816    rs2275591    A    C    248.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.6;SNPEFF_AMINO_ACID_CHANGE=L18R;SNPEFF_CODON_CHANGE=cTt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50778729_50778886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L2HGDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261699    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:281,24,0
14    50786004    rs12433794    A    G    330.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=E18G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50785952_50786019;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5S;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358473    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:363,30,0
14    50788213    rs2275592    C    T    763.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_AMINO_ACID_CHANGE=P18L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50788201_50788312;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5S;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245448    GT:AD:DP:GQ:PL    1/1:0,24:24:57.19:797,57,0
14    50789578    rs8017316    G    C    118.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245448    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:151,12,0
14    50792273    rs8003113    A    G    2047.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426751    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2080,154,0
14    50798665    rs4901015    C    T    92.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554438    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:124,9,0
14    50798743    rs4901016    G    A    483.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=G164R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50798740_50798954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5S;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358473    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:517,39,0
14    50799126    rs7161563    G    C    2156.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_AMINO_ACID_CHANGE=Q275E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_50798980_50799150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395834    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2189,163,0
14    50799338    rs7141289    T    C    130.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356146    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
14    50801102    rs7141402    G    A    497.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=35.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356146    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:531,42,0
14    50802727    rs7148089    A    C    4477.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358473    GT:AD:DP:GQ:PL    1/1:0,126:126:99:4477,337,0
14    50802840    rs7148292    A    G    3022.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6882;MQ=59.47;MQ0=0;QD=34.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP5S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358473    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3055,226,0
14    50807624    rs11570840    C    T    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528197    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,74
14    50808802    rs7142237    G    T    898.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:932,69,0
14    50808965    rs11570836    A    C    304.46    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.607;DB;DP=24;Dels=0.0;FS=3.388;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.348;QD=12.69;ReadPosRankSum=2.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:13,11:24:99:334,0,451
14    50809895    rs2226054    G    C    70.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=17.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:102,9,0
14    50824839    rs11157737    G    A    328.14    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=23;Dels=0.0;FS=1.76;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.523;QD=14.27;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:12,11:23:99:358,0,350
14    50824954    rs11157738    T    C    174.37    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.33;MQ0=0;MQRankSum=1.093;QD=12.45;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:6,7:14:99:204,0,187
14    50844119    rs10143848    T    C    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
14    50844367    rs78942968    G    GA    361.99    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=29;FS=5.988;HRun=1;HaplotypeScore=70.0952;IndelType=I;MQ=61.11;MQ0=0;MQRankSum=2.443;QD=12.48;ReadPosRankSum=-0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:17,12:29:99:401,0,542
14    50844856    rs1890978    A    G    621.08    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.419;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=1.35;QD=10.9;ReadPosRankSum=-0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:30,27:57:99:651,0,955
14    50845301    .    G    C    190.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=15.86;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:4,8:12:99:220,0,141
14    50847107    rs10141601    G    A    125.53    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=9.66;ReadPosRankSum=2.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:8,5:13:99:156,0,294
14    50856641    rs3783412    A    G    116.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.453;QD=11.67;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:5,5:10:99:147,0,178
14    50856927    rs10131126    A    G    2290.35    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.821;DB;DP=152;Dels=0.0;FS=2.872;HRun=0;HaplotypeScore=0.9332;MQ=59.85;MQ0=0;MQRankSum=1.026;QD=15.07;ReadPosRankSum=0.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216378    GT:AD:DP:GQ:PL    0/1:73,79:152:99:2320,0,2397
14    50863945    rs190089769    G    A    1402.81    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=4.589;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=15.59;ReadPosRankSum=0.045;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356146    GT:AD:DP:GQ:PL    0/1:42,48:90:99:1433,0,1159
14    50877491    rs1265878    C    A    459.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=38.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356146    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:493,36,0
14    50895348    rs187665966    G    A    153.82    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=13.98;ReadPosRankSum=1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP4K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013125    GT:AD:DP:GQ:PL    0/1:3,8:11:83.28:184,0,83
14    50910240    rs4901035    C    T    129.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP4K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013125    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
14    50929508    rs11624731    C    A    2933.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP4K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554091    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2966,226,0
14    50930991    rs8022257    G    T    335.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP4K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557578    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:369,27,0
14    50935150    rs6572670    A    G    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP4K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557578    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
14    50942047    rs12717408    C    T    33.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP4K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557390    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
14    50949196    rs67174049    TA    T    218.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=8;HaplotypeScore=37.4948;IndelType=D;MQ=60.9;MQ0=0;QD=18.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP4K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554066    GT:AD:DP:GQ:PL    1/1:2,10:12:27.04:261,27,0
14    50971446    rs7146431    C    T    828.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAP4K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554273    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:861,66,0
14    51054598    rs35014209    A    G    697.89    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.859;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3336;MQ=59.54;MQ0=0;MQRankSum=1.914;QD=13.96;ReadPosRankSum=0.652;SNPEFF_AMINO_ACID_CHANGE=P28;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51054549_51054796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354525    GT:AD:DP:GQ:PL    0/1:22,27:50:99:728,0,776
14    51057727    rs1060197    G    A    1337.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=E117;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51057659_51057793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354525    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1371,99,0
14    51058234    rs2934684    G    T    908.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553509    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:942,69,0
14    51060452    rs2291672    A    G    213.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553746    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:246,21,0
14    51062162    rs3015455    G    A    103.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553746    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,139
14    51062236    rs3834518    TTC    T    1152.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=165.9442;IndelType=D;MQ=58.75;MQ0=1;QD=28.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553746    GT:AD:DP:GQ:PL    1/1:4,36:39:99:1195,102,0
14    51062357    rs3759588    G    A    980.92    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.195;DB;DP=69;Dels=0.0;FS=1.046;HRun=1;HaplotypeScore=0.0;MQ=58.72;MQ0=0;MQRankSum=0.245;QD=14.22;ReadPosRankSum=-1.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553746    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1011,0,980
14    51062455    rs10131107    G    A    176.88    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=14.74;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553746    GT:AD:DP:GQ:PL    0/1:5,7:12:99:207,0,175
14    51087263    rs11157759    A    G    239.03    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=13;Dels=0.0;FS=2.774;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.606;QD=18.39;ReadPosRankSum=-0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354525    GT:AD:DP:GQ:PL    0/1:3,10:13:86.87:269,0,87
14    51088757    .    G    A    115.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.24;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354525    GT:AD:DP:GQ:PL    0/1:2,4:6:65.23:145,0,65
14    51089727    rs3736307    G    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354525    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
14    51096610    rs3080579    G    GTTCTT    1982.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=155.5124;IndelType=I;MQ=43.04;MQ0=0;QD=86.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555266    GT:AD:DP:GQ:PL    1/1:3,20:23:69.23:2024,69,0
14    51096644    .    G    GAAT    816.38    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DP=29;FS=17.975;HRun=0;HaplotypeScore=238.4579;IndelType=I;MQ=46.81;MQ0=0;MQRankSum=-3.47;QD=28.15;ReadPosRankSum=1.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555266    GT:AD:DP:GQ:PL    0/1:21,8:29:99:855,0,588
14    51107452    rs871643    T    C    1269.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324679    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1303,99,0
14    51107737    rs4075253    G    A    159.90    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=12.3;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324679    GT:AD:DP:GQ:PL    0/1:7,6:13:99:190,0,260
14    51111889    rs2934687    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324679    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
14    51134705    .    G    A    182.99    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.752;QD=9.63;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535862    GT:AD:DP:GQ:PL    0/1:9,10:19:99:213,0,258
14    51192659    rs1983764    G    A    1210.49    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=1.413;DB;DP=62;Dels=0.0;FS=9.553;HRun=0;HaplotypeScore=1.9552;MQ=59.7;MQ0=0;MQRankSum=-0.922;QD=19.52;ReadPosRankSum=0.431;SNPEFF_AMINO_ACID_CHANGE=P1355;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51192545_51192784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382043    GT:AD:DP:GQ:PL    0/1:21,41:62:99:1240,0,577
14    51196142    rs2984274    T    C    361.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.66;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:394,30,0
14    51197893    rs2984278    A    G    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    51204996    rs11376    C    T    1774.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_AMINO_ACID_CHANGE=Q1166;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51204858_51205004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382043    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1808,135,0
14    51206021    rs3015485    A    G    3510.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480476    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3510,259,0
14    51208236    rs76858548    T    TGTA    1929.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=82.0175;IndelType=I;MQ=53.18;MQ0=0;QD=66.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    1/1:0,28:29:87.30:1972,87,0
14    51219500    rs34725615    TA    T    63.67    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=16;FS=0.0;HRun=15;HaplotypeScore=74.5857;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=0.271;QD=3.98;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    0/1:6,8:16:93.91:103,0,94
14    51223106    rs2295846    G    T    206.21    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=3.423;DB;DP=19;Dels=0.0;FS=3.039;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=10.85;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    0/1:12,7:19:99:236,0,332
14    51223789    rs2073347    C    T    843.27    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.255;DB;DP=59;Dels=0.0;FS=2.677;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-1.095;QD=14.29;ReadPosRankSum=-1.798;SNPEFF_AMINO_ACID_CHANGE=G1303E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51223210_51225348;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311149    GT:AD:DP:GQ:PL    0/1:28,31:59:99:873,0,901
14    51224374    rs12882191    T    G    1157.19    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.671;DB;DP=103;Dels=0.0;FS=1.658;HRun=1;HaplotypeScore=2.4916;MQ=59.78;MQ0=0;MQRankSum=0.766;QD=11.23;ReadPosRankSum=-1.089;SNPEFF_AMINO_ACID_CHANGE=Q1108P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51223210_51225348;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311149    GT:AD:DP:GQ:PL    0/1:58,45:103:99:1187,0,1919
14    51224658    rs2073348    T    A    1040.77    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.504;DB;DP=103;Dels=0.0;FS=5.072;HRun=0;HaplotypeScore=1.4538;MQ=59.78;MQ0=0;MQRankSum=0.586;QD=10.1;ReadPosRankSum=-0.264;SNPEFF_AMINO_ACID_CHANGE=S1013;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51223210_51225348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311149    GT:AD:DP:GQ:PL    0/1:63,40:103:99:1071,0,2106
14    51225132    rs2073349    G    T    330.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.268;DB;DP=42;Dels=0.0;FS=12.8;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.481;QD=7.88;ReadPosRankSum=0.509;SNPEFF_AMINO_ACID_CHANGE=A855;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51223210_51225348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311149    GT:AD:DP:GQ:PL    0/1:28,14:42:99:361,0,942
14    51226336    rs7155230    A    G    212.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.52;MQ0=0;QD=23.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:245,24,0
14    51226439    rs12892462    C    G    543.33    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.248;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=-1.752;QD=13.58;ReadPosRankSum=0.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    0/1:21,19:40:99:573,0,673
14    51228682    rs6572694    G    A    706.50    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.503;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.226;QD=13.08;ReadPosRankSum=0.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    0/1:29,25:54:99:736,0,865
14    51230431    rs10557077    CTT    C    327.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=80.1047;IndelType=D;MQ=58.46;MQ0=0;QD=20.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    1/1:2,11:16:46.83:370,47,0
14    51237701    rs17793018    A    G    1209.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9831;MQ=58.85;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=V338;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51237570_51237710;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453401    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1242,99,0
14    51239067    rs8020503    C    G    1342.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_AMINO_ACID_CHANGE=L273;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51239019_51239186;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453401    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1375,111,0
14    51245666    rs7143959    T    C    318.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:352,27,0
14    51289874    rs1547077    G    T    1104.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.569;DB;DP=47;Dels=0.02;FS=0.0;HRun=12;HaplotypeScore=2.9329;MQ=59.52;MQ0=0;MQRankSum=0.432;QD=23.02;ReadPosRankSum=-0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    1/1:3,44:47:96.28:1138,96,0
14    51290141    rs9672090    A    G    440.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245441    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:474,36,0
14    51332335    rs17123039    T    G    34.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=4.91;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532462    GT:AD:DP:GQ:PL    0/1:4,3:7:64.35:64,0,137
14    51332728    rs17720642    T    C    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532462    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
14    51344584    rs71443128    C    CAAA    1985.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=9;HaplotypeScore=184.6236;IndelType=I;MQ=52.98;MQ0=0;QD=52.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    1/1:6,26:38:99:2028,111,0
14    51347023    rs12889998    T    C    205.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:239,18,0
14    51347107    rs2185300    G    A    988.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1021,75,0
14    51348281    rs71986843    C    CTT    1777.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.91;DB;DP=127;FS=2.295;HRun=17;HaplotypeScore=1255.3769;IndelType=I;MQ=46.77;MQ0=0;MQRankSum=0.717;QD=14.0;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    1/1:48,41:127:99:1820,120,0
14    51348379    .    T    C    3199.56    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=3.381;DP=217;Dels=0.0;FS=9.112;HRun=0;HaplotypeScore=4.6449;MQ=54.09;MQ0=0;MQRankSum=1.475;QD=14.74;ReadPosRankSum=-0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    0/1:103,114:217:99:3230,0,2899
14    51352159    rs4898675    C    T    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
14    51353493    rs7158183    T    C    408.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:442,33,0
14    51355517    rs10144606    C    A    464.01    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.103;DB;DP=20;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=0.124;QD=23.2;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    0/1:6,14:20:99:494,0,183
14    51368495    rs17123103    G    A    278.46    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.333;QD=19.89;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216392    GT:AD:DP:GQ:PL    0/1:5,9:14:99:308,0,153
14    51368610    rs28564871    A    G    352.59    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=25;Dels=0.0;FS=1.68;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.753;QD=14.1;ReadPosRankSum=0.695;SNPEFF_AMINO_ACID_CHANGE=I175V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51368547_51368629;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395752    GT:AD:DP:GQ:PL    0/1:13,12:25:99:383,0,427
14    51370539    rs17123107    A    G    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.02;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216392    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
14    51370784    rs4901064    G    C    1596.30    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=5.637;DB;DP=99;Dels=0.0;FS=0.862;HRun=1;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.885;QD=16.12;ReadPosRankSum=-0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216392    GT:AD:DP:GQ:PL    0/1:49,50:99:99:1626,0,1365
14    51371121    rs4901065    C    T    957.26    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.717;DB;DP=73;Dels=0.0;FS=1.073;HRun=0;HaplotypeScore=0.9947;MQ=59.68;MQ0=0;MQRankSum=0.237;QD=13.11;ReadPosRankSum=1.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553715    GT:AD:DP:GQ:PL    0/1:35,38:73:99:987,0,1054
14    51371130    rs11157780    C    T    747.59    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.261;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.613;QD=11.68;ReadPosRankSum=0.965;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553715    GT:AD:DP:GQ:PL    0/1:30,33:64:99:778,0,918
14    51371150    rs11157781    C    T    634.44    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.967;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.2434;MQ=59.46;MQ0=0;MQRankSum=1.608;QD=14.75;ReadPosRankSum=0.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553715    GT:AD:DP:GQ:PL    0/1:20,22:43:99:664,0,641
14    51372098    rs3216001    CA    C    781.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=6.114;DB;DP=52;FS=1.289;HRun=2;HaplotypeScore=229.1133;IndelType=D;MQ=60.21;MQ0=0;MQRankSum=0.518;QD=15.04;ReadPosRankSum=0.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    0/1:26,26:52:99:821,0,1016
14    51372103    rs1042266    C    G    858.53    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=55;Dels=0.0;FS=1.236;HRun=0;HaplotypeScore=0.8321;MQ=59.78;MQ0=0;MQRankSum=1.155;QD=15.61;ReadPosRankSum=-0.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    0/1:26,29:55:99:889,0,857
14    51372333    rs1959527    A    G    719.22    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=1.587;DB;DP=33;Dels=0.0;FS=2.833;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.764;QD=21.79;ReadPosRankSum=-0.294;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    0/1:10,23:33:99:749,0,314
14    51375797    rs8004768    T    G    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.59;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337334    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,112
14    51378590    rs11356035    CT    C    836.57    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=5.504;DB;DP=68;FS=0.946;HRun=3;HaplotypeScore=160.6605;IndelType=D;MQ=60.48;MQ0=0;MQRankSum=0.207;QD=12.3;ReadPosRankSum=-0.297;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000544180    GT:AD:DP:GQ:PL    0/1:39,29:68:99:876,0,1374
14    51381286    rs4901066    T    C    275    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.376;QD=17.19;ReadPosRankSum=-0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528757    GT:AD:DP:GQ:PL    0/1:7,9:16:99:305,0,223
14    51381950    rs2075646    T    A    843.35    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.043;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.36;MQ0=0;MQRankSum=0.728;QD=11.71;ReadPosRankSum=0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553872    GT:AD:DP:GQ:PL    0/1:41,31:72:99:873,0,1411
14    51382358    rs1890701    T    C    318.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553872    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:351,27,0
14    51382405    rs1890700    T    C    230.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=14;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.892;QD=16.43;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553872    GT:AD:DP:GQ:PL    0/1:6,8:14:99:260,0,193
14    51383432    rs2075643    G    A    933.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.522;DB;DP=57;Dels=0.0;FS=1.075;HRun=0;HaplotypeScore=0.9832;MQ=59.19;MQ0=0;MQRankSum=-1.995;QD=16.38;ReadPosRankSum=-0.952;SNPEFF_AMINO_ACID_CHANGE=D306;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51383360_51383452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544180    GT:AD:DP:GQ:PL    0/1:24,32:57:99:964,0,628
14    51402011    rs117171255    A    G    34.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.83;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216392    GT:AD:DP:GQ:PL    0/1:3,2:5:64.16:64,0,103
14    51402055    rs3818871    G    A    115.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.19;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216392    GT:AD:DP:GQ:PL    0/1:2,4:6:65.23:145,0,65
14    51445969    rs2275463    C    G    716.70    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.807;DB;DP=41;Dels=0.0;FS=6.836;HRun=0;HaplotypeScore=1.5362;MQ=59.44;MQ0=0;MQRankSum=-1.495;QD=17.48;ReadPosRankSum=-0.966;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555170    GT:AD:DP:GQ:PL    0/1:17,24:41:99:747,0,555
14    51446216    rs2275462    T    G    6062.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7254;MQ=59.48;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=L653F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51446105_51446267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298355    GT:AD:DP:GQ:PL    1/1:0,179:179:99:6062,460,0
14    51448364    rs10137862    C    T    282.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555933    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:315,24,0
14    51449874    rs28504356    C    T    116.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298355    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
14    51449906    rs10873039    G    C    246.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298355    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
14    51465051    rs34153026    T    C    246.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298355    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
14    51475794    rs2297889    A    T    1737.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298355    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1770,132,0
14    51491956    rs11848681    T    C    1465.65    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.798;DB;DP=125;Dels=0.0;FS=3.715;HRun=2;HaplotypeScore=3.6415;MQ=55.84;MQ0=0;MQRankSum=0.096;QD=11.73;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298355    GT:AD:DP:GQ:PL    0/1:66,59:125:99:1496,0,1782
14    51492135    rs11268748    C    CCACACAGGTGTTTT    8787.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=397.433;IndelType=I;MQ=33.19;MQ0=0;QD=186.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298355    GT:AD:DP:GQ:PL    1/1:24,17:47:99:8787,138,0
14    51710508    rs66509045    T    TA    1929.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.922;DB;DP=49;FS=0.0;HRun=1;HaplotypeScore=290.217;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=1.511;QD=39.38;ReadPosRankSum=-1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457354    GT:AD:DP:GQ:PL    1/1:3,46:49:99:1972,133,0
14    51710551    rs10131881    A    T    861.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DB;DP=79;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=3.8919;MQ=59.81;MQ0=0;MQRankSum=-1.425;QD=10.9;ReadPosRankSum=-0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457354    GT:AD:DP:GQ:PL    1/1:1,78:79:53.88:894,54,0
14    51712092    rs4606635    T    C    556.05    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=27;Dels=0.0;FS=3.823;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.582;QD=20.59;ReadPosRankSum=1.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457354    GT:AD:DP:GQ:PL    0/1:10,17:27:99:586,0,299
14    51713659    rs11625621    G    C    100.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.81;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555574    GT:AD:DP:GQ:PL    0/1:2,4:6:62.76:131,0,63
14    51713995    .    A    ATAT    643.29    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.786;DP=34;FS=3.032;HRun=0;HaplotypeScore=144.7271;IndelType=I;MQ=56.14;MQ0=0;MQRankSum=0.199;QD=18.92;ReadPosRankSum=-0.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555574    GT:AD:DP:GQ:PL    0/1:23,11:34:99:682,0,732
14    51716161    rs150684130    GT    G    949.81    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=0.948;DB;DP=115;FS=6.675;HRun=11;HaplotypeScore=612.2576;IndelType=D;MQ=60.27;MQ0=0;MQRankSum=-0.019;QD=8.26;ReadPosRankSum=0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555574    GT:AD:DP:GQ:PL    0/1:60,55:115:99:989,0,1348
14    51716188    rs7161242    T    G    3854.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.296;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.99;MQ0=0;MQRankSum=1.578;QD=28.34;ReadPosRankSum=0.09;SNPEFF_AMINO_ACID_CHANGE=T164;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51716186_51716287;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457354    GT:AD:DP:GQ:PL    1/1:1,135:136:99:3855,274,0
14    51716467    rs7160810    G    A    1699.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=P216;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_51716411_51716483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457354    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1733,126,0
14    51720906    rs11157811    T    G    275.63    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.448;QD=22.97;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457354    GT:AD:DP:GQ:PL    0/1:1,11:12:10.55:305,0,11
14    52165083    rs6572784    T    G    124.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554778    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
14    52169091    rs10140556    G    A    315.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554778    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:349,27,0
14    52175047    rs6572787    C    A    166.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.656;QD=11.9;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555936    GT:AD:DP:GQ:PL    0/1:8,6:14:99:197,0,232
14    52179059    rs4901146    T    C    46.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555936    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
14    52182081    rs731715    T    A    2412.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.01;MQ0=0;QD=36.55;SNPEFF_AMINO_ACID_CHANGE=S219;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52182043_52182217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554167    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2445,181,0
14    52182406    rs9323218    T    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
14    52186972    rs2277494    A    G    509.83    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.595;DB;DP=47;Dels=0.0;FS=4.24;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.617;QD=10.85;ReadPosRankSum=-0.331;SNPEFF_AMINO_ACID_CHANGE=P138;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52186773_52187243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555197    GT:AD:DP:GQ:PL    0/1:26,21:47:99:540,0,850
14    52194407    rs4433726    G    A    558.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.379;QD=13.96;ReadPosRankSum=-0.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FRMD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555703    GT:AD:DP:GQ:PL    0/1:20,20:40:99:588,0,658
14    52223628    rs34838851    A    G    394.33    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.053;DB;DP=25;Dels=0.0;FS=6.908;HRun=0;HaplotypeScore=0.6651;MQ=52.29;MQ0=0;MQRankSum=0.794;QD=15.77;ReadPosRankSum=-1.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-280K24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557308    GT:AD:DP:GQ:PL    0/1:11,14:25:99:424,0,278
14    52223641    rs60514509    A    T    300.69    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5317;MQ=53.24;MQ0=0;MQRankSum=-0.704;QD=11.14;ReadPosRankSum=0.315;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-280K24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557308    GT:AD:DP:GQ:PL    0/1:13,14:27:99:331,0,393
14    52224005    rs9671290    G    A    5416.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=51.3;MQ0=0;QD=33.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-280K24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557308    GT:AD:DP:GQ:PL    1/1:0,164:164:99:5416,424,0
14    52224280    rs9796332    C    T    1192.89    MQFilter40    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.401;DB;DP=163;Dels=0.0;FS=2.251;HRun=0;HaplotypeScore=0.6651;MQ=29.47;MQ0=38;MQRankSum=1.714;QD=7.32;ReadPosRankSum=-2.154;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-280K24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557308    GT:AD:DP:GQ:PL    0/1:87,76:163:99:1223,0,1167
14    52433103    rs1032582    A    G    190.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335281    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:223,18,0
14    52433115    rs1032583    G    A    281.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335281    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
14    52465078    rs34968560    T    C    67.55    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.51;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261700    GT:AD:DP:GQ:PL    0/1:6,3:9:97.55:98,0,222
14    52465460    rs1151570    G    A    242.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261700    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
14    52471017    rs71444718    G    GAAAT    1492.14    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.955;DB;DP=55;FS=1.05;HRun=0;HaplotypeScore=193.405;IndelType=I;MQ=58.51;MQ0=0;MQRankSum=-1.398;QD=27.13;ReadPosRankSum=0.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553707    GT:AD:DP:GQ:PL    0/1:33,21:55:99:1531,0,1445
14    52474721    rs1476284    C    T    973.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261700    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1006,75,0
14    52477867    rs10146989    G    A    63.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.322;QD=7.96;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395707    GT:AD:DP:GQ:PL    0/1:5,3:8:93.68:94,0,186
14    52478315    rs1051069    A    G    3359.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=A1068;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52478272_52478401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541773    GT:AD:DP:GQ:PL    1/1:0,105:106:99:3360,271,0
14    52478541    rs61971549    A    G    394.21    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=20;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.656;QD=19.71;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395707    GT:AD:DP:GQ:PL    0/1:8,12:20:99:424,0,269
14    52480965    rs35387228    G    A    500.86    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.142;DB;DP=44;Dels=0.0;FS=2.724;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.156;QD=11.38;ReadPosRankSum=0.261;SNPEFF_AMINO_ACID_CHANGE=L1156F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52480888_52481174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395707    GT:AD:DP:GQ:PL    0/1:25,19:44:99:531,0,726
14    52481917    rs946615    C    T    517.26    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=41;Dels=0.0;FS=2.755;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.013;QD=12.62;ReadPosRankSum=0.49;SNPEFF_AMINO_ACID_CHANGE=R1035;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52481772_52481993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:24,17:41:99:547,0,707
14    52486961    rs77091361    C    T    188.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.648;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.957;MQ=58.89;MQ0=0;MQRankSum=-0.112;QD=8.98;ReadPosRankSum=-1.679;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:14,7:21:99:219,0,425
14    52493723    rs60511209    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    52494092    rs28663441    G    C    241.98    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=11.52;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554284    GT:AD:DP:GQ:PL    0/1:13,8:21:99:272,0,410
14    52495354    rs74049344    T    G    319.33    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.564;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.14;MQ0=0;MQRankSum=-0.769;QD=11.83;ReadPosRankSum=-1.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:13,14:27:99:349,0,419
14    52495375    rs7144352    C    T    1077.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    1/1:0,35:35:84.24:1111,84,0
14    52496091    rs1497087    A    C    235.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:269,21,0
14    52496231    rs35706797    C    T    635.05    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.185;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.3601;MQ=59.17;MQ0=0;MQRankSum=1.534;QD=11.34;ReadPosRankSum=-0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:31,24:56:99:665,0,919
14    52496275    rs12887495    C    A    681.12    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.136;DB;DP=57;Dels=0.0;FS=5.483;HRun=0;HaplotypeScore=1.81;MQ=58.78;MQ0=0;MQRankSum=0.211;QD=11.95;ReadPosRankSum=1.53;SNPEFF_AMINO_ACID_CHANGE=R391;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52496265_52496408;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316204    GT:AD:DP:GQ:PL    0/1:30,27:57:99:711,0,1032
14    52496387    rs2273430    C    A    1131.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=G354V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52496265_52496408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316204    GT:AD:DP:GQ:PL    1/1:0,34:34:93.25:1165,93,0
14    52496407    rs2273431    C    T    271.80    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.246;QD=10.87;ReadPosRankSum=0.411;SNPEFF_AMINO_ACID_CHANGE=E347;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52496265_52496408;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316204    GT:AD:DP:GQ:PL    0/1:14,11:25:99:302,0,440
14    52505717    rs34552350    T    C    254.45    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.508;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.092;QD=11.06;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:11,12:23:99:284,0,398
14    52507429    rs3742536    A    G    781.54    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=62;Dels=0.0;FS=0.968;HRun=1;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;MQRankSum=0.716;QD=12.61;ReadPosRankSum=0.007;SNPEFF_AMINO_ACID_CHANGE=S250P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52507369_52507569;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316204    GT:AD:DP:GQ:PL    0/1:34,28:62:99:812,0,1016
14    52508678    rs10133930    G    C    277.45    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.931;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=25.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:3,8:11:49.11:307,0,49
14    52509101    rs1982963    G    A    755.50    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.072;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.6;MQ0=0;MQRankSum=-1.562;QD=13.25;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:31,26:57:99:785,0,992
14    52509131    rs2273433    G    A    519.42    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.557;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.15;QD=12.99;ReadPosRankSum=-0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:22,18:40:99:549,0,732
14    52509483    rs56834750    T    C    425.92    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=42;Dels=0.0;FS=1.361;HRun=2;HaplotypeScore=0.0;MQ=57.37;MQ0=0;MQRankSum=-0.051;QD=9.91;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:25,17:42:99:456,0,775
14    52509484    rs4901186    G    A    422.22    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DB;DP=43;Dels=0.0;FS=1.361;HRun=0;HaplotypeScore=0.0;MQ=57.37;MQ0=0;MQRankSum=0.436;QD=9.82;ReadPosRankSum=-0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:26,17:43:99:452,0,760
14    52509501    rs3818186    T    C    450.17    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.704;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.72;MQ0=0;MQRankSum=0.115;QD=9.19;ReadPosRankSum=-1.391;SNPEFF_AMINO_ACID_CHANGE=E473;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52509500_52509649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541773    GT:AD:DP:GQ:PL    0/1:29,20:49:99:480,0,896
14    52509788    rs3818187    A    G    78.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.74;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:109,0,67
14    52520368    rs2101919    C    T    1245.79    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.596;DB;DP=79;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.877;QD=15.77;ReadPosRankSum=-0.246;SNPEFF_AMINO_ACID_CHANGE=G400D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52520297_52520656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541773    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1276,0,1164
14    52520853    rs904059    A    G    1109.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.34;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=Y265;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52520738_52521039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541773    GT:AD:DP:GQ:PL    1/1:0,35:35:90.22:1142,90,0
14    52534997    rs7151874    T    C    96.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:129,12,0
14    52535387    rs984051    A    C    347.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:381,30,0
14    52535415    rs984050    G    A    298.89    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;MQRankSum=1.592;QD=14.94;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216286    GT:AD:DP:GQ:PL    0/1:9,11:20:99:329,0,312
14    52535648    rs3920038    G    T    149.71    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=23;Dels=0.0;FS=2.066;HRun=0;HaplotypeScore=1.612;MQ=60.0;MQ0=0;MQRankSum=0.167;QD=6.51;ReadPosRankSum=-1.036;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000395707    GT:AD:DP:GQ:PL    0/1:16,7:23:99:180,0,536
14    52536512    rs1497082    T    C    125.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=I12V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52536474_52536545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NID2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395707    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
14    52735656    rs803009    A    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306051    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
14    52741646    rs17125273    G    A    424.74    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.607;QD=15.73;ReadPosRankSum=-0.461;SNPEFF_AMINO_ACID_CHANGE=R348;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52741449_52743442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGDR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306051    GT:AD:DP:GQ:PL    0/1:14,13:27:99:455,0,467
14    52781195    rs1254598    G    A    379.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.92;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_52781113_52782109;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245457    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:412,30,0
14    52794234    rs708502    T    C    473.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557436    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:507,42,0
14    52906081    rs2249922    T    G    1565.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.3;SNPEFF_AMINO_ACID_CHANGE=R679;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52905922_52906112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1598,120,0
14    52906179    rs2249925    C    T    293.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:327,24,0
14    52907353    rs1952254    C    T    1794.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=Q644;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52907282_52907442;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1827,132,0
14    52921896    rs11623917    A    G    85.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
14    52924042    rs75363086    C    T    210.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
14    52936602    rs45497892    A    G    101.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,212
14    52937255    rs7155490    C    T    2097.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_AMINO_ACID_CHANGE=E486K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52937230_52937398;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2131,157,0
14    52948990    rs111824837    C    T    342.89    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.591;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.805;QD=8.36;ReadPosRankSum=-1.098;SNPEFF_AMINO_ACID_CHANGE=A424T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_52948948_52949007;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    0/1:26,14:41:99:373,0,724
14    52957731    .    G    GA    119.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=39;FS=0.0;HRun=18;HaplotypeScore=383.1687;IndelType=I;MQ=50.9;MQ0=0;MQRankSum=-2.633;QD=3.06;ReadPosRankSum=-2.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:26,6:39:5.32:159,5,0
14    52981401    rs3742533    G    T    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
14    52981483    rs111299323    G    T    431.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=27;Dels=0.04;FS=0.0;HRun=2;HaplotypeScore=1.933;MQ=62.01;MQ0=0;MQRankSum=0.22;QD=15.42;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    0/1:12,15:27:99:462,0,416
14    52981552    rs11387534    G    GA    2962.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.267;DB;DP=111;FS=3.008;HRun=10;HaplotypeScore=328.1976;IndelType=I;MQ=61.04;MQ0=0;MQRankSum=0.215;QD=26.69;ReadPosRankSum=-0.526;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:12,98:111:99:3004,208,0
14    52985654    rs7150790    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    52985760    rs7150981    T    G    751.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,23:23:69.16:785,69,0
14    52985764    rs7151107    T    C    905.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=39.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281741    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:939,69,0
14    53019944    rs147785041    A    G    105.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.04;SNPEFF_AMINO_ACID_CHANGE=S27G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_53019866_53020309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR137C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321662    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:138,12,0
14    53098902    rs762063    G    A    1646.25    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=4.993;DB;DP=95;Dels=0.0;FS=3.999;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.901;QD=17.33;ReadPosRankSum=-0.247;SNPEFF_AMINO_ACID_CHANGE=V248I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_53098878_53099027;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR137C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321662    GT:AD:DP:GQ:PL    0/1:43,52:95:99:1676,0,1221
14    53100760    rs11157925    A    G    1704.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR137C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321662    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1737,126,0
14    53119201    rs10144981    G    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395686    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:123,9,0
14    53120048    rs141108666    GAATTA    G    2638.79    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=8.488;DB;DP=117;FS=0.0;HRun=0;HaplotypeScore=620.1854;IndelType=D;MQ=56.05;MQ0=2;MQRankSum=0.061;QD=22.17;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395686    GT:AD:DP:GQ:PL    0/1:71,48:117:99:2678,0,4700
14    53124593    rs76880703    A    G    578.31    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.061;QD=18.66;ReadPosRankSum=-0.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395686    GT:AD:DP:GQ:PL    0/1:12,19:31:99:608,0,413
14    53124773    rs74832745    T    C    997.41    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.266;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.766;QD=17.81;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395686    GT:AD:DP:GQ:PL    0/1:23,33:56:99:1027,0,677
14    53124807    rs3783453    C    T    1840.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395686    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1873,135,0
14    53133036    rs12885338    T    C    1002.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554251    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1036,78,0
14    53150695    rs11621485    G    C    737.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERO1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395686    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:770,57,0
14    53194419    rs6696    T    C    279.06    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.968;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.85;MQ0=0;MQRankSum=-0.239;QD=11.63;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557557    GT:AD:DP:GQ:PL    0/1:15,9:24:99:309,0,466
14    53197042    rs2277493    G    C    38.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.69;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445930    GT:AD:DP:GQ:PL    0/1:2,2:4:68.77:69,0,72
14    53235545    rs2274274    A    T    297.55    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.084;DB;DP=40;Dels=0.0;FS=3.807;HRun=10;HaplotypeScore=2.5226;MQ=58.84;MQ0=0;MQRankSum=-0.468;QD=7.44;ReadPosRankSum=0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STYX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354586    GT:AD:DP:GQ:PL    0/1:26,14:40:99:328,0,857
14    53250293    rs2296494    G    C    314.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.738;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.448;QD=26.18;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPNAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216410    GT:AD:DP:GQ:PL    1/1:1,11:12:2.64:344,3,0
14    53324891    rs7143400    A    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    53325090    rs6572868    C    T    1738.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7046;MQ=58.9;MQ0=0;QD=31.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399304    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1771,135,0
14    53326454    rs3818453    C    A    606.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341590    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:640,48,0
14    53339777    rs1952089    C    T    505.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341590    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:539,42,0
14    53342148    rs113177107    C    T    290.15    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.37;QD=24.18;ReadPosRankSum=-1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341590    GT:AD:DP:GQ:PL    0/1:3,9:12:87.66:320,0,88
14    53345266    rs2357946    G    C    2548.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7256;MQ=59.71;MQ0=0;QD=32.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554288    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2582,205,0
14    53345378    rs2357947    G    A    3654.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.97;MQ=59.56;MQ0=0;QD=35.13;SNPEFF_AMINO_ACID_CHANGE=Y248;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_53345300_53345407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554152    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3654,262,0
14    53386172    rs5808695    A    ATAAT    895    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=51.8146;IndelType=I;MQ=52.67;MQ0=0;QD=55.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341590    GT:AD:DP:GQ:PL    1/1:2,13:16:42.14:937,42,0
14    53386237    rs3825593    C    G    128.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341590    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
14    53416942    rs4901320    G    A    416.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341590    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:449,33,0
14    53513478    rs113847447    AAG    A    1921.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DB;DP=50;FS=4.349;HRun=0;HaplotypeScore=178.1592;IndelType=D;MQ=59.54;MQ0=0;MQRankSum=1.096;QD=38.43;ReadPosRankSum=-0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555621    GT:AD:DP:GQ:PL    1/1:2,48:50:93.41:1964,93,0
14    53518551    rs78491021    AT    A    1488.55    PASS    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=7.025;DB;DP=79;FS=2.102;HRun=1;HaplotypeScore=205.5648;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=0.747;QD=18.84;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555400    GT:AD:DP:GQ:PL    0/1:34,45:79:99:1528,0,1390
14    53522324    rs11402447    T    TA    1351.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=1;HaplotypeScore=76.0235;IndelType=I;MQ=60.95;MQ0=0;QD=39.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    1/1:1,33:34:93.31:1394,93,0
14    53525392    rs915436    C    T    347.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:380,30,0
14    53525427    rs12882412    C    T    75.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=12.6;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    0/1:3,3:6:97.78:106,0,98
14    53529669    rs4898778    A    T    1310.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=T457;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_53529661_53529923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395610    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1344,102,0
14    53539471    rs875663    A    G    935.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=38.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:969,72,0
14    53540249    rs1959351    A    G    88.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
14    53560385    rs150100092    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    53619463    rs2358188    G    A    303.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=25.28;SNPEFF_AMINO_ACID_CHANGE=H118;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_53618979_53619816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    1/1:1,11:12:30.07:336,30,0
14    53619480    .    T    TGCCGCC    437.64    PASS    AC=2;AF=1.00;AN=2;DP=13;FS=0.0;HRun=0;HaplotypeScore=110.155;IndelType=I;MQ=46.98;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=G112GAA;SNPEFF_CODON_CHANGE=ggc/ggGGCGGCc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_14_53618979_53619816;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    1/1:6,3:13:18.05:480,18,0
14    53619544    rs2358189    G    A    321.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.42;MQ0=0;QD=29.21;SNPEFF_AMINO_ACID_CHANGE=F91;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_53618979_53619816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323669    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:354,30,0
14    54417522    rs17563    A    G    629.86    PASS    AB=0.289;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.483;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=16.58;ReadPosRankSum=-1.094;SNPEFF_AMINO_ACID_CHANGE=V152A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_54416454_54417606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245451    GT:AD:DP:GQ:PL    0/1:11,27:38:99:660,0,301
14    54418411    rs2071047    G    A    390.68    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.128;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.11;MQ0=0;MQRankSum=0.68;QD=15.03;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245451    GT:AD:DP:GQ:PL    0/1:12,14:26:99:421,0,311
14    54418986    rs2761880    T    C    826.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245451    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:860,63,0
14    54458078    rs1957844    C    T    1042.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ATP5C1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441945    GT:AD:DP:GQ:PL    1/1:0,29:29:81.23:1076,81,0
14    54458159    rs1957845    T    C    1159.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ATP5C1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441945    GT:AD:DP:GQ:PL    1/1:0,34:34:93.28:1193,93,0
14    54875276    rs4251623    C    A    39.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDKN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335183    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:69,0,28
14    54875514    rs2179896    A    G    1445.89    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.42;DB;DP=121;Dels=0.0;FS=1.473;HRun=0;HaplotypeScore=0.8321;MQ=59.43;MQ0=0;MQRankSum=0.105;QD=11.95;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDKN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335183    GT:AD:DP:GQ:PL    0/1:62,58:121:99:1476,0,1792
14    54875607    rs4251626    A    G    295.23    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.084;DB;DP=43;Dels=0.0;FS=2.292;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.377;QD=6.87;ReadPosRankSum=-0.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDKN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335183    GT:AD:DP:GQ:PL    0/1:20,23:43:99:325,0,710
14    54875608    rs4251627    A    C    304.83    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=42;Dels=0.0;FS=2.356;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.693;QD=7.26;ReadPosRankSum=-0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDKN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335183    GT:AD:DP:GQ:PL    0/1:19,23:42:99:335,0,675
14    54896852    rs78534712    G    A    67.16    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.19;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNIH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556113    GT:AD:DP:GQ:PL    0/1:2,4:6:56.03:97,0,56
14    54947501    rs59955412    T    C    102.94    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=12.87;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553566    GT:AD:DP:GQ:PL    0/1:3,5:8:99:133,0,100
14    54955677    rs3737314    A    T    93.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=9.31;ReadPosRankSum=-0.633;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553952    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,126
14    54997404    rs147996328    T    C    46.09    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=13;Dels=0.0;FS=2.92;HRun=0;HaplotypeScore=0.9159;MQ=59.04;MQ0=0;MQRankSum=-0.761;QD=3.55;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CGRRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216420    GT:AD:DP:GQ:PL    0/1:10,3:13:76.09:76,0,373
14    55168673    rs1022754    A    G    594.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251091    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:628,54,0
14    55203703    rs10133272    G    T    1012.76    PASS    AB=0.369;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.084;DB;DP=66;Dels=0.0;FS=8.166;HRun=0;HaplotypeScore=3.474;MQ=57.51;MQ0=0;MQRankSum=1.269;QD=15.34;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557013    GT:AD:DP:GQ:PL    0/1:24,41:66:99:1043,0,720
14    55241941    rs2295824    G    C    187.70    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=58.89;MQ0=0;MQRankSum=0.181;QD=8.94;ReadPosRankSum=1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251091    GT:AD:DP:GQ:PL    0/1:13,8:21:99:218,0,426
14    55251438    .    T    TG    356.11    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DP=15;FS=0.0;HRun=5;HaplotypeScore=43.6878;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.678;QD=23.74;ReadPosRankSum=-0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251091    GT:AD:DP:GQ:PL    0/1:4,11:15:25.39:395,0,25
14    55255673    rs11431    C    T    354.73    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.621;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.861;QD=11.09;ReadPosRankSum=1.221;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553988    GT:AD:DP:GQ:PL    0/1:18,14:32:99:385,0,510
14    55429902    rs34874701    AG    A    45.33    QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=38;FS=0.0;HRun=14;HaplotypeScore=216.2141;IndelType=D;MQ=43.87;MQ0=0;MQRankSum=0.212;QD=1.19;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359167    GT:AD:DP:GQ:PL    0/1:31,5:38:59.37:84,0,59
14    55433193    .    C    T    746.62    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DP=72;Dels=0.0;FS=4.793;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.262;QD=10.37;ReadPosRankSum=-0.273;SNPEFF_AMINO_ACID_CHANGE=A288;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_55433193_55433324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359167    GT:AD:DP:GQ:PL    0/1:41,31:72:99:777,0,1280
14    55473968    rs150624333    G    A    35.49    QDFilter2    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.517;DB;DP=30;Dels=0.0;FS=4.15;HRun=18;HaplotypeScore=2.6972;MQ=45.12;MQ0=0;MQRankSum=-2.638;QD=1.18;ReadPosRankSum=2.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455555    GT:AD:DP:GQ:PL    0/1:14,16:30:65.48:65,0,219
14    55493350    rs1187878    T    C    758.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360586    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:791,63,0
14    55493408    rs1201378    T    C    1511.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360586    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1545,114,0
14    55510110    rs17128136    G    A    513.23    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.315;DB;DP=76;Dels=0.0;FS=1.037;HRun=0;HaplotypeScore=1.5115;MQ=59.7;MQ0=0;MQRankSum=0.678;QD=6.75;ReadPosRankSum=-0.254;SNPEFF_AMINO_ACID_CHANGE=P117;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_55509670_55516204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOCS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339298    GT:AD:DP:GQ:PL    0/1:56,20:76:99:543,0,1715
14    55611700    .    AT    A    80.91    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DP=13;FS=0.0;HRun=6;HaplotypeScore=31.1568;IndelType=D;MQ=61.64;MQ0=0;MQRankSum=1.381;QD=6.22;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247191    GT:AD:DP:GQ:PL    0/1:8,5:13:99:120,0,274
14    55612006    rs71792561    T    TA    32.97    QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=51;FS=8.226;HRun=13;HaplotypeScore=241.5124;IndelType=I;MQ=57.92;MQ0=0;MQRankSum=0.217;QD=0.65;ReadPosRankSum=0.362;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247191    GT:AD:DP:GQ:PL    0/1:45,6:51:71.99:72,0,438
14    55636060    rs34824914    TA    T    77.10    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=29;FS=0.0;HRun=18;HaplotypeScore=233.252;IndelType=D;MQ=48.61;MQ0=0;MQRankSum=-1.44;QD=2.66;ReadPosRankSum=-0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247191    GT:AD:DP:GQ:PL    0/1:13,8:29:70.74:116,0,71
14    55902542    rs7149317    G    A    347.78    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=23;Dels=0.0;FS=2.291;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.646;QD=15.12;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556755    GT:AD:DP:GQ:PL    0/1:11,12:23:99:378,0,391
14    55902698    rs113744998    T    TAA    234.47    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.215;DB;DP=26;FS=0.0;HRun=13;HaplotypeScore=113.5884;IndelType=I;MQ=55.08;MQ0=0;MQRankSum=-0.462;QD=9.02;ReadPosRankSum=0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556755    GT:AD:DP:GQ:PL    0/1:16,6:26:99:273,0,225
14    55907025    rs8020152    T    A    336.89    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=23;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.215;QD=14.65;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247219    GT:AD:DP:GQ:PL    0/1:11,12:23:99:367,0,354
14    55907172    rs8019270    C    G    438.07    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.19;DB;DP=36;Dels=0.0;FS=3.093;HRun=1;HaplotypeScore=0.9665;MQ=59.36;MQ0=0;MQRankSum=0.982;QD=12.17;ReadPosRankSum=0.127;SNPEFF_AMINO_ACID_CHANGE=R31P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_55907114_55907334;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247219    GT:AD:DP:GQ:PL    0/1:17,19:36:99:468,0,445
14    56100160    rs10135907    G    T    187.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395308    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:220,18,0
14    56103882    rs10483647    A    G    42.43    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.93;QD=3.26;ReadPosRankSum=-1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395308    GT:AD:DP:GQ:PL    0/1:10,3:13:72.42:72,0,343
14    56108033    rs2341890    G    A    382.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554567    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:416,30,0
14    56119413    rs11158047    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395308    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    56122613    rs4901595    T    A    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554890    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
14    56126456    rs7160678    C    A    2442.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555164    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2475,178,0
14    56142480    rs3736877    A    G    46.45    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.278;QD=4.22;ReadPosRankSum=-2.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553624    GT:AD:DP:GQ:PL    0/1:7,4:11:76.45:76,0,249
14    56232970    rs2184557    T    C    693.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=31.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-813I20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554458    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:726,54,0
14    56233069    rs10144431    G    T    1146.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.94;MQ0=0;QD=33.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-813I20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554458    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1179,87,0
14    56233260    rs2152281    C    T    2758.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=32.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-813I20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554458    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2791,217,0
14    56233307    rs56190279    C    T    2432.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=32.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-813I20.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554458    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2465,202,0
14    56233561    rs12589473    G    A    798.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=36.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RPL13AP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487479    GT:AD:DP:GQ:PL    1/1:0,22:22:66.18:831,66,0
14    56542034    rs434713    A    G    247.33    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.674;DB;DP=19;Dels=0.0;FS=3.245;HRun=2;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=0.939;QD=13.02;ReadPosRankSum=-0.204;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL163952.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408327    GT:AD:DP:GQ:PL    0/1:9,10:19:99:277,0,321
14    56756743    rs173352    T    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PELI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267460    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    57046829    rs2275025    C    A    89.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261556    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:122,9,0
14    57052511    rs3737171    G    T    2261.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_AMINO_ACID_CHANGE=T38;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_57052479_57052620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556810    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2294,166,0
14    57070501    rs10782433    A    G    1367.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=59.45;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261556    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1401,117,0
14    57072203    rs3818777    T    A    703.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554981    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:737,57,0
14    57088070    rs8006843    A    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553335    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
14    57092038    rs2274706    A    G    762.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261556    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:796,60,0
14    57099859    rs1041316    G    A    2091.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=S565N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_57099713_57099889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261556    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2124,166,0
14    57101412    rs1810816    G    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261556    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
14    57101682    rs913742    A    G    2111.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=56.43;MQ0=0;QD=34.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538838    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2145,162,0
14    57268443    rs171978    C    T    438.49    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=34;Dels=0.0;FS=1.523;HRun=2;HaplotypeScore=0.8321;MQ=59.34;MQ0=0;MQRankSum=-2.359;QD=12.53;ReadPosRankSum=0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408990    GT:AD:DP:GQ:PL    0/1:16,18:34:99:468,0,572
14    57270684    rs709948    C    G    141    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339475    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:174,15,0
14    57672540    rs3742577    T    C    97.95    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=7.0;ReadPosRankSum=-0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340918    GT:AD:DP:GQ:PL    0/1:9,5:14:99:128,0,332
14    57672715    rs3742578    C    T    614.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.012;DB;DP=42;Dels=0.0;FS=6.641;HRun=0;HaplotypeScore=1.788;MQ=59.45;MQ0=0;MQRankSum=1.006;QD=14.63;ReadPosRankSum=0.377;SNPEFF_AMINO_ACID_CHANGE=H46Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_57671888_57673291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391152.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391612    GT:AD:DP:GQ:PL    0/1:21,21:42:99:645,0,613
14    57672871    rs7141911    A    G    135.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340918    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
14    57675185    rs10150771    C    T    295.80    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.297;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.986;QD=11.38;ReadPosRankSum=-1.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL391152.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391612    GT:AD:DP:GQ:PL    0/1:15,11:26:99:326,0,510
14    57676330    rs1804820    G    T    1868.86    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.264;DB;DP=113;Dels=0.0;FS=7.672;HRun=1;HaplotypeScore=1.8288;MQ=60.0;MQ0=0;MQRankSum=-0.223;QD=16.54;ReadPosRankSum=1.361;SNPEFF_AMINO_ACID_CHANGE=A566;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_57676285_57676500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340918    GT:AD:DP:GQ:PL    0/1:49,63:113:99:1899,0,1373
14    57688856    rs11846972    A    T    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340918    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
14    57702687    rs3736904    C    T    366.06    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.61;QD=13.56;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554598    GT:AD:DP:GQ:PL    0/1:15,12:27:99:396,0,511
14    57711181    rs9323303    C    T    286.48    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.307;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.102;QD=15.08;ReadPosRankSum=0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340918    GT:AD:DP:GQ:PL    0/1:10,9:19:99:316,0,302
14    57735954    rs7152744    T    C    331.40    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9982;MQ=60.0;MQ0=0;MQRankSum=1.283;QD=25.49;ReadPosRankSum=1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUDENG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556995    GT:AD:DP:GQ:PL    0/1:2,11:13:45.18:361,0,45
14    57740793    rs1189898    T    G    153.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUDENG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554213    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
14    57741550    rs1189899    A    G    1060.99    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=72;Dels=0.0;FS=0.898;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=14.74;ReadPosRankSum=0.617;SNPEFF_AMINO_ACID_CHANGE=Q221;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_57740962_57741607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUDENG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261558    GT:AD:DP:GQ:PL    0/1:37,35:72:99:1091,0,1193
14    57866623    rs2152360    A    G    3020.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395257    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3053,223,0
14    57876265    rs11620639    G    A    2000.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=30.77;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395257    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2033,156,0
14    57938124    rs1152531    C    T    1262.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=36.07;SNPEFF_AMINO_ACID_CHANGE=R279;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_57937973_57938308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf105;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534126    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1295,99,0
14    57938260    rs1152530    T    C    570.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_AMINO_ACID_CHANGE=Y234C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_57937973_57938308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf105;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534126    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:603,45,0
14    57948380    rs1152522    T    C    1961.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf105;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000216445    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1995,147,0
14    57957654    rs1203339    T    C    381.71    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.855;QD=13.16;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216445    GT:AD:DP:GQ:PL    0/1:16,13:29:99:412,0,537
14    57957664    rs1203338    T    A    1215.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216445    GT:AD:DP:GQ:PL    1/1:0,34:34:93.31:1248,93,0
14    58055806    rs1703441    T    A    417.24    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.771;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8245;MQ=60.0;MQ0=0;MQRankSum=0.109;QD=14.39;ReadPosRankSum=-0.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556828    GT:AD:DP:GQ:PL    0/1:15,14:29:99:447,0,542
14    58056257    rs1190313    G    T    1131.39    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.46;DB;DP=77;Dels=0.0;FS=5.036;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=14.69;ReadPosRankSum=0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556828    GT:AD:DP:GQ:PL    0/1:38,39:77:99:1161,0,1354
14    58060586    rs180872    C    T    707.57    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.979;DB;DP=51;Dels=0.0;FS=2.043;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.39;QD=13.87;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556828    GT:AD:DP:GQ:PL    0/1:29,22:51:99:738,0,993
14    58060598    rs238377    C    G    739.89    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.983;DB;DP=59;Dels=0.0;FS=1.934;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=1.52;QD=12.54;ReadPosRankSum=1.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556828    GT:AD:DP:GQ:PL    0/1:35,24:59:99:770,0,1218
14    58060862    rs17724076    G    A    653.89    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.042;DB;DP=51;Dels=0.0;FS=3.213;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.049;QD=12.82;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35F4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339762    GT:AD:DP:GQ:PL    0/1:29,22:51:99:684,0,889
14    58471289    rs2256270    A    G    234.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=15.61;ReadPosRankSum=-0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438670    GT:AD:DP:GQ:PL    0/1:6,9:15:99:264,0,192
14    58471699    rs727203    T    C    633.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.85;QD=11.52;ReadPosRankSum=0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267485    GT:AD:DP:GQ:PL    0/1:33,22:55:99:664,0,1097
14    58478873    rs33931374    GA    G    357.45    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=4.091;DB;DP=34;FS=3.256;HRun=7;HaplotypeScore=79.1297;IndelType=D;MQ=60.32;MQ0=0;MQRankSum=-0.85;QD=10.51;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267485    GT:AD:DP:GQ:PL    0/1:18,16:34:99:396,0,471
14    58478979    rs3783688    G    T    150.16    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=18.77;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267485    GT:AD:DP:GQ:PL    0/1:3,5:8:99:180,0,103
14    58478990    rs3783689    T    A    146.55    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.32;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267485    GT:AD:DP:GQ:PL    0/1:3,5:8:99:177,0,100
14    58563694    rs2273442    G    C    628.33    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.598;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.813;QD=15.71;ReadPosRankSum=-0.867;SNPEFF_AMINO_ACID_CHANGE=Q613E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_58563442_58563699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267485    GT:AD:DP:GQ:PL    0/1:19,21:40:99:658,0,604
14    58600107    rs2180520    T    A    302.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DB;DP=17;Dels=0.0;FS=0.0;HRun=12;HaplotypeScore=1.9958;MQ=60.0;MQ0=0;MQRankSum=-1.123;QD=17.79;ReadPosRankSum=1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267485    GT:AD:DP:GQ:PL    1/1:1,16:17:13.37:335,13,0
14    58605790    rs3829765    G    A    1847.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=59.16;MQ0=0;MQRankSum=1.48;QD=33.58;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=T134I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_58604708_58606132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438670    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1880,144,0
14    58666882    rs61975916    A    G    396.29    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=16;Dels=0.0;FS=5.898;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.783;QD=24.77;ReadPosRankSum=-0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438670    GT:AD:DP:GQ:PL    0/1:2,14:16:2.66:425,0,3
14    58669660    rs75291796    AT    A    2234.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=1;HaplotypeScore=156.767;IndelType=D;MQ=61.5;MQ0=0;QD=39.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTR10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254286    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2277,166,0
14    58674469    rs17832885    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTR10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254286    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:81,6,0
14    58678269    rs6573192    A    G    127.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACTR10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556243    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
14    58724817    rs35486640    C    CTT    263.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=10.6153;IndelType=I;MQ=60.0;MQ0=0;QD=52.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556321    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:305,15,0
14    58727859    rs11426708    C    CT    75.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=10;FS=0.0;HRun=14;HaplotypeScore=79.3834;IndelType=I;MQ=57.52;MQ0=0;MQRankSum=0.736;QD=7.58;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553665    GT:AD:DP:GQ:PL    0/1:5,5:10:1.26:113,0,1
14    58730626    rs2348071    A    G    299.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438670    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:333,24,0
14    58734282    rs35846334    G    C    532.83    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.35;DB;DP=49;Dels=0.0;FS=1.308;HRun=0;HaplotypeScore=2.5114;MQ=60.0;MQ0=0;MQRankSum=0.09;QD=10.87;ReadPosRankSum=-2.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555743    GT:AD:DP:GQ:PL    0/1:25,24:49:99:563,0,794
14    58737402    rs1885133    C    T    174.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL132989.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399076    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
14    58737530    rs1885134    T    A    207.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL132989.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399076    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
14    58737766    rs8005100    A    T    764.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL132989.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399076    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:798,60,0
14    58766617    rs1957038    A    G    2699.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.71;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348476    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2733,211,0
14    58771632    rs7155580    A    G    2121.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348476    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2154,157,0
14    58827881    rs140418008    C    T    99.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=9.94;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469635    GT:AD:DP:GQ:PL    0/1:5,5:10:99:129,0,183
14    58838668    rs1051860    A    G    888.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=S1176;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_58838604_58840448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348476    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:922,69,0
14    58838701    rs1051861    C    T    673.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=C1187;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_58838604_58840448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348476    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:707,51,0
14    58869510    rs7153357    T    C    2041.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM20L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360945    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2075,168,0
14    58875038    rs4901856    A    G    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216463    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
14    58893531    rs2031419    C    T    117.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=19.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395159    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:150,12,0
14    58910543    rs1743733    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557192    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
14    58917225    rs1748970    C    G    935.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555833    GT:AD:DP:GQ:PL    1/1:0,31:31:72.24:968,72,0
14    58917454    rs1748971    G    A    2812.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_AMINO_ACID_CHANGE=S233;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_58917297_58917464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546216    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2845,211,0
14    58920240    rs1748975    A    C    1000.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1034,75,0
14    58923395    rs1743721    G    A    1760.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1794,129,0
14    58926527    rs1748980    C    T    1479.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1512,108,0
14    58932772    rs1743716    A    G    2998.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3032,235,0
14    58934371    rs1632390    G    A    2106.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2140,159,0
14    58937416    rs1748986    T    C    4039    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7333;MQ=59.68;MQ0=0;QD=31.07;SNPEFF_AMINO_ACID_CHANGE=L703P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_58937331_58937441;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546216    GT:AD:DP:GQ:PL    1/1:0,129:130:99:4039,313,0
14    58949144    rs2757712    G    A    280.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:314,24,0
14    58949560    rs186337875    C    T    272.15    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.076;QD=13.61;ReadPosRankSum=-1.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    0/1:9,11:20:99:302,0,321
14    58953617    rs1743702    T    C    663.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:697,54,0
14    58953746    rs1617510    C    G    3932.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8115;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=P1012A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_58953725_58953884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423743    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3932,307,0
14    58954588    rs35914991    T    TA    3977.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.225;DB;DP=137;FS=0.0;HRun=9;HaplotypeScore=321.6756;IndelType=I;MQ=59.27;MQ0=0;MQRankSum=1.704;QD=29.03;ReadPosRankSum=0.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:15,121:137:99:3977,344,0
14    58955029    rs1748997    T    C    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261244    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
14    58955715    rs1748998    A    G    1020.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546216    GT:AD:DP:GQ:PL    1/1:0,28:28:84.26:1054,84,0
14    59105188    rs2003021    C    T    367.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_AMINO_ACID_CHANGE=L90;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_59104897_59105265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DACT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335867    GT:AD:DP:GQ:PL    1/1:0,12:13:30.10:400,30,0
14    59108643    .    T    G    39.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DACT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335867    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
14    59112475    rs863091    C    T    731.34    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DB;DP=50;Dels=0.0;FS=6.406;HRun=1;HaplotypeScore=0.8667;MQ=57.27;MQ0=0;MQRankSum=-0.871;QD=14.63;ReadPosRankSum=0.463;SNPEFF_AMINO_ACID_CHANGE=V341;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_59112087_59115039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DACT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395153    GT:AD:DP:GQ:PL    0/1:21,29:50:99:761,0,615
14    59112732    rs17832998    C    T    1328.34    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.364;DB;DP=96;Dels=0.0;FS=2.696;HRun=1;HaplotypeScore=0.9998;MQ=57.56;MQ0=0;MQRankSum=-0.905;QD=13.84;ReadPosRankSum=1.143;SNPEFF_AMINO_ACID_CHANGE=A183V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_59111952_59115003;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DACT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395151    GT:AD:DP:GQ:PL    0/1:47,49:96:99:1358,0,1366
14    59113430    rs698025    G    A    310.58    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.413;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.629;QD=9.41;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=G416S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_59111952_59115003;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DACT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395151    GT:AD:DP:GQ:PL    0/1:21,12:33:99:341,0,574
14    59787053    rs12586981    G    A    114.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
14    59789586    rs8021976    A    G    2124.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2158,174,0
14    59789727    rs8022614    G    A    1532.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_AMINO_ACID_CHANGE=K186;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_59789610_59789943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1565,126,0
14    59792207    rs17096088    T    G    33.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.72;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557327    GT:AD:DP:GQ:PL    0/1:3,2:5:63.58:64,0,96
14    59797115    rs941883    A    G    567.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556894    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:600,45,0
14    59797235    rs941884    A    G    1509.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=Q463;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_59797219_59797406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1542,117,0
14    59798473    rs2146012    C    G    4616.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.65;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    1/1:0,130:131:99:4616,349,0
14    59804999    rs1958180    A    G    140.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=14.05;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    0/1:4,6:10:99:170,0,136
14    59820780    rs34744474    AT    A    47.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=16;HaplotypeScore=70.864;IndelType=D;MQ=57.05;MQ0=0;QD=5.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    1/1:1,7:8:14.61:90,15,0
14    59834017    rs10130826    G    T    249.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
14    59834048    rs10130669    C    T    673.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DAAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351081    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:706,51,0
14    59970459    rs35606604    TA    T    439.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=32.9809;IndelType=D;MQ=62.65;MQ0=0;QD=36.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:482,36,0
14    59978366    rs10658081    A    ATG    576.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=26.4478;IndelType=I;MQ=60.0;MQ0=0;QD=52.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:619,33,0
14    59992416    rs1956364    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
14    60004494    rs1884735    T    C    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
14    60004621    rs1884734    G    A    385.81    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,20:20:50.85:419,51,0
14    60004622    rs5013570    C    T    122.75    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=6.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,20:20:17.96:156,18,0
14    60004625    rs5013569    C    T    121.80    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.54;MQ0=0;QD=5.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,23:23:17.96:155,18,0
14    60004637    rs1956358    A    G    955.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.37;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:988,81,0
14    60004844    rs4261431    C    T    2861.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=G507E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60004741_60004872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2894,220,0
14    60005074    rs12586723    A    G    160.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:193,15,0
14    60007366    rs34112354    C    CT    171.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.0;HRun=24;HaplotypeScore=439.6538;IndelType=I;MQ=38.86;MQ0=0;QD=2.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:45,9:66:34.97:214,35,0
14    60030675    rs17255905    A    G    337.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:370,27,0
14    60031645    rs4901941    C    T    2062.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.62;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2096,168,0
14    60031996    rs1980580    G    A    3888.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3889,295,0
14    60032046    rs1980579    A    G    2337.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2371,175,0
14    60034840    rs982862    G    C    782.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,22:22:63.16:816,63,0
14    60039374    rs12886261    G    A    127.29    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.639;DB;DP=19;Dels=0.0;FS=5.909;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=6.7;ReadPosRankSum=0.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    0/1:14,5:19:99:157,0,385
14    60041749    rs35273647    G    GA    93.92    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;FS=0.0;HRun=9;HaplotypeScore=25.3166;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=7.83;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    0/1:7,5:12:99:133,0,123
14    60043422    rs4898996    A    G    243.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.05;SNPEFF_AMINO_ACID_CHANGE=T24;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60043337_60043493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555041    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:276,21,0
14    60063472    rs6573275    A    G    2706.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=H191;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60062695_60063505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395090    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2739,202,0
14    60069591    rs11622741    T    C    81.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-0.727;QD=20.49;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490111    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:112,0,29
14    60071972    rs1950787    T    C    55.14    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.89;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267484    GT:AD:DP:GQ:PL    0/1:5,3:8:85.13:85,0,186
14    60072023    rs1950786    G    A    1226.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=38.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267484    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1259,93,0
14    60073935    rs1956372    A    G    149.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.221;QD=18.72;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267484    GT:AD:DP:GQ:PL    0/1:3,5:8:83.09:180,0,83
14    60076783    rs1998111    G    C    1124.92    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.332;DB;DP=72;Dels=0.0;FS=6.0;HRun=0;HaplotypeScore=0.9789;MQ=59.68;MQ0=0;MQRankSum=0.548;QD=15.62;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267484    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1155,0,954
14    60411549    rs35724288    AT    A    399.74    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.816;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=52.7762;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=0.27;QD=19.99;ReadPosRankSum=0.347;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    0/1:8,12:20:99:439,0,314
14    60444652    rs219328    A    T    1561.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1595,126,0
14    60448572    rs34896205    G    C    962.69    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=2.013;DB;DP=101;Dels=0.0;FS=19.396;HRun=1;HaplotypeScore=2.0321;MQ=60.0;MQ0=0;MQRankSum=0.964;QD=9.53;ReadPosRankSum=-0.807;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    0/1:63,38:101:99:993,0,1797
14    60451770    rs219341    G    A    555.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:589,45,0
14    60451816    rs219342    G    A    1112.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1145,87,0
14    60452152    rs219343    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
14    60464691    rs219364    T    G    727.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:760,57,0
14    60468661    rs219369    C    T    1147.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=37.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,31:31:90.28:1181,90,0
14    60483598    rs219388    C    T    171.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:205,15,0
14    60484865    rs219390    G    T    82.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
14    60484931    rs219391    C    T    597.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:630,48,0
14    60485240    rs219392    G    A    568.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=LRRC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254271    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:602,48,0
14    60574539    rs12465    A    G    6229.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7381;MQ=59.76;MQ0=0;QD=35.8;SNPEFF_AMINO_ACID_CHANGE=L61;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60574304_60577875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf135;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391611    GT:AD:DP:GQ:PL    1/1:0,174:174:99:6230,454,0
14    60575240    rs61294013    T    C    284.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317623    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:318,24,0
14    60581309    rs11399265    G    GT    834.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.777;DB;DP=31;FS=0.0;HRun=9;HaplotypeScore=82.7511;IndelType=I;MQ=62.65;MQ0=0;MQRankSum=-0.06;QD=26.93;ReadPosRankSum=-1.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391611    GT:AD:DP:GQ:PL    1/1:4,26:31:61:877,61,0
14    60581673    rs72261200    CT    C    2162.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DB;DP=97;FS=4.624;HRun=10;HaplotypeScore=248.161;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=-1.215;QD=22.29;ReadPosRankSum=-1.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391611    GT:AD:DP:GQ:PL    1/1:11,86:97:99:2204,228,0
14    60581863    rs219314    G    A    6268.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_AMINO_ACID_CHANGE=P113;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60581692_60582179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf135;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317623    GT:AD:DP:GQ:PL    1/1:0,171:171:99:6268,460,0
14    60581935    rs150687    C    T    8339.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=236;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.9442;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_AMINO_ACID_CHANGE=S137;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60581692_60582179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf135;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317623    GT:AD:DP:GQ:PL    1/1:0,236:236:99:8340,626,0
14    60582053    rs150688    G    A    7900.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=230;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.9;MQ0=0;QD=34.35;SNPEFF_AMINO_ACID_CHANGE=V177I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60581692_60582179;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf135;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317623    GT:AD:DP:GQ:PL    1/1:0,230:230:99:7900,575,0
14    60712515    rs8018093    G    C    127.53    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.2;MQ0=0;MQRankSum=0.555;QD=9.81;ReadPosRankSum=1.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325658    GT:AD:DP:GQ:PL    0/1:7,6:13:99:158,0,238
14    60750349    rs4899009    C    A    164.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.73;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525399    GT:AD:DP:GQ:PL    0/1:6,6:12:99:195,0,212
14    60750365    rs8012816    C    T    143.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=14.39;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525399    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,163
14    60921673    rs1262175    T    C    2175.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321731    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2209,175,0
14    60923783    rs11625921    C    T    6268.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=165;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_AMINO_ACID_CHANGE=V404I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60923635_60923813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321731    GT:AD:DP:GQ:PL    1/1:0,165:165:99:6269,466,0
14    60924009    rs12147690    A    G    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321731    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
14    60928201    rs1956549    G    A    1474.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321731    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1507,114,0
14    60935281    rs12878738    C    T    1928.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555476    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1961,147,0
14    60945203    rs11158285    G    A    357.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321731    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:391,30,0
14    60945298    rs10133403    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321731    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
14    60975956    rs1956558    T    C    207.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=23.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556799    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:240,18,0
14    60976537    rs33912345    C    A    734.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=59.07;MQ0=0;QD=29.39;SNPEFF_AMINO_ACID_CHANGE=H141N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_60975869_60976688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIX6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327720    GT:AD:DP:GQ:PL    1/1:0,25:25:60.16:768,60,0
14    60978071    rs1061108    C    G    606.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.63;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556799    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:639,48,0
14    61180657    rs3742636    T    G    729.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=38.42;SNPEFF_AMINO_ACID_CHANGE=H278P;SNPEFF_CODON_CHANGE=cAt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_61179885_61180921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000554079    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:763,57,0
14    61278684    rs2020892    A    G    2748.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MNAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553354    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2781,232,0
14    61285352    rs973063    A    G    820.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MNAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261245    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:854,63,0
14    61445967    rs7142228    A    G    1174.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=S217P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_61445949_61446604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261249    GT:AD:DP:GQ:PL    1/1:0,36:36:90.28:1207,90,0
14    61449167    rs2296923    T    C    807.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267488    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:841,63,0
14    61449328    rs976272    T    A    2028.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_AMINO_ACID_CHANGE=L16M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_61449083_61449356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526105    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2062,156,0
14    61451329    rs2182985    G    A    602.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267488    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:636,48,0
14    61451589    rs2149303    C    T    1003.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267488    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1037,75,0
14    61496971    rs1465148    A    T    77.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.84;MQ0=0;QD=25.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267488    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
14    61497058    rs1465147    T    C    333.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=37.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267488    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:367,27,0
14    61497147    rs1465146    A    T    1473.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267488    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1507,114,0
14    61497285    rs1465145    T    C    997.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267488    GT:AD:DP:GQ:PL    1/1:0,32:32:84.24:1030,84,0
14    61509924    rs2296921    T    C    1338.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8516;MQ=59.0;MQ0=0;QD=31.87;SNPEFF_AMINO_ACID_CHANGE=G19;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_61509868_61509930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529212    GT:AD:DP:GQ:PL    1/1:1,41:42:99:1371,102,0
14    61519304    rs10139651    G    A    117.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527591    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
14    61643045    rs4902033    C    A    1594.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1627,126,0
14    61747644    rs3196765    A    G    122.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=G74;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_61746021_61747959;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM30B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355702    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
14    61789192    rs79204130    G    A    270.38    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=24;Dels=0.0;FS=1.77;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=11.27;ReadPosRankSum=1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557294    GT:AD:DP:GQ:PL    0/1:14,10:24:99:300,0,420
14    61789318    rs1886466    C    G    85.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=21.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557294    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:118,9,0
14    61857969    rs3742633    A    G    485.58    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.013;DB;DP=42;Dels=0.0;FS=4.675;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=-1.343;QD=11.56;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=V130;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_61857943_61858006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332981    GT:AD:DP:GQ:PL    0/1:21,20:42:99:516,0,652
14    61915751    rs2296273    G    A    38.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.49;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553830    GT:AD:DP:GQ:PL    0/1:4,2:6:68.95:69,0,86
14    61917736    rs150788890    T    C    462.42    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.302;DB;DP=32;Dels=0.0;FS=6.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.882;QD=14.45;ReadPosRankSum=-0.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553265    GT:AD:DP:GQ:PL    0/1:13,19:32:99:492,0,398
14    61952124    rs2251380    G    C    1799.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332981    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1833,132,0
14    61952133    rs2251382    A    G    2287.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.23;MQ0=0;QD=38.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332981    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2321,172,0
14    61952429    rs1536016    T    C    1980.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.19;MQ0=0;MQRankSum=-1.611;QD=34.74;ReadPosRankSum=1.611;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332981    GT:AD:DP:GQ:PL    1/1:1,56:57:99:2013,114,0
14    61995673    rs2463117    C    T    135.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.65;MQ0=0;MQRankSum=-2.054;QD=15.06;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332981    GT:AD:DP:GQ:PL    0/1:3,6:9:98.35:166,0,98
14    61996018    rs17098729    C    G    181.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=13.99;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555110    GT:AD:DP:GQ:PL    0/1:7,6:13:99:212,0,247
14    61997019    rs1092184    T    A    552.05    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.544;DB;DP=48;Dels=0.0;FS=6.214;HRun=7;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=11.5;ReadPosRankSum=1.183;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555110    GT:AD:DP:GQ:PL    0/1:22,25:48:99:582,0,724
14    61997226    rs1088680    C    T    1272.97    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=5.144;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.46;MQ0=0;MQRankSum=-1.035;QD=16.53;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=N126;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_61997125_61997302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555185    GT:AD:DP:GQ:PL    0/1:37,40:77:99:1303,0,1116
14    61997393    rs1088679    T    C    122.92    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.467;QD=8.78;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555110    GT:AD:DP:GQ:PL    0/1:9,5:14:99:153,0,333
14    62014289    rs2184633    T    A    350.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;MQRankSum=-0.746;QD=15.93;ReadPosRankSum=-1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332981    GT:AD:DP:GQ:PL    0/1:10,12:22:99:381,0,290
14    62198923    rs12885226    T    C    76.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556237    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
14    62198954    rs11158358    G    C    213.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556237    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
14    62203462    rs10873142    C    T    272.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323441    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:306,24,0
14    62205175    rs10138153    T    C    2494.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.66;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554177    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2528,193,0
14    62208005    rs4902080    T    C    330.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547430    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
14    62211578    rs10645014    CGTGT    C    164.58    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=123.0959;IndelType=D;MQ=59.94;MQ0=0;MQRankSum=0.956;QD=7.48;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547430    GT:AD:DP:GQ:PL    0/1:13,5:22:33.27:204,0,33
14    62212675    rs4902082    C    T    145.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555014    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:178,15,0
14    62213553    rs10147275    T    G    585.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323441    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:618,48,0
14    62213848    rs2057482    T    C    1714.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556827    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1747,132,0
14    62213929    rs5809121    A    AT    528.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=4;HaplotypeScore=51.9628;IndelType=I;MQ=60.72;MQ0=0;QD=35.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HIF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556827    GT:AD:DP:GQ:PL    1/1:1,14:15:42.14:571,42,0
14    62233806    rs1254677    A    G    585.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216294    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:619,45,0
14    62249191    rs35450258    C    T    169.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.133;QD=16.97;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216294    GT:AD:DP:GQ:PL    0/1:4,6:10:99:200,0,127
14    62462766    rs8019076    T    C    4012.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0035;MQ=59.42;MQ0=0;QD=33.72;SNPEFF_AMINO_ACID_CHANGE=V10A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_62462541_62463260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430451    GT:AD:DP:GQ:PL    1/1:0,119:119:99:4013,292,0
14    62463303    rs61743836    G    A    1517.43    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.461;DB;DP=126;Dels=0.0;FS=2.909;HRun=1;HaplotypeScore=3.4351;MQ=59.64;MQ0=0;MQRankSum=-0.287;QD=11.95;ReadPosRankSum=-1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430451    GT:AD:DP:GQ:PL    0/1:70,56:126:99:1547,0,2279
14    62463311    rs62639692    A    G    1373.69    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=3.018;DB;DP=106;Dels=0.0;FS=2.016;HRun=0;HaplotypeScore=1.6598;MQ=59.78;MQ0=0;MQRankSum=0.892;QD=12.96;ReadPosRankSum=-0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430451    GT:AD:DP:GQ:PL    0/1:60,46:106:99:1404,0,1900
14    62536686    rs8018978    G    A    130.40    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.267;QD=9.31;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430451    GT:AD:DP:GQ:PL    0/1:9,5:14:99:160,0,324
14    62542186    rs35785416    TA    T    153.53    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=0.076;DB;DP=47;FS=0.0;HRun=15;HaplotypeScore=283.5948;IndelType=D;MQ=57.84;MQ0=0;MQRankSum=-0.302;QD=3.27;ReadPosRankSum=1.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430451    GT:AD:DP:GQ:PL    0/1:24,21:47:99:193,0,339
14    62550877    rs2353778    G    A    841.27    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=5.04;DB;DP=77;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.392;QD=10.93;ReadPosRankSum=-0.089;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446982    GT:AD:DP:GQ:PL    0/1:47,30:77:99:871,0,1307
14    63174616    rs7161127    T    C    2211.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=29.89;SNPEFF_AMINO_ACID_CHANGE=R859;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_63173287_63175173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2245,184,0
14    63174960    rs4902176    C    T    828.66    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.263;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=17.63;ReadPosRankSum=-0.639;SNPEFF_AMINO_ACID_CHANGE=A745T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_63173287_63175173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    0/1:19,28:47:99:859,0,647
14    63179333    rs12435381    C    T    1014.80    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.799;DB;DP=58;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=2.7479;MQ=59.6;MQ0=0;MQRankSum=1.149;QD=17.5;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    0/1:24,34:58:99:1045,0,754
14    63179593    rs2171877    T    C    381.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    1/1:0,14:14:36.10:415,36,0
14    63269317    rs12588427    T    C    396.21    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.078;DB;DP=21;Dels=0.0;FS=2.969;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.499;QD=18.87;ReadPosRankSum=-0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    0/1:8,13:21:99:426,0,270
14    63453773    rs1950975    A    G    2121.79    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.846;QD=14.05;ReadPosRankSum=2.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    0/1:75,76:151:99:2152,0,2220
14    63454129    rs1950974    A    T    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,71
14    63467873    rs72730205    A    C    135.48    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=16.93;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    0/1:3,5:8:98.77:165,0,99
14    63467879    rs10142809    C    T    145.28    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.14;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322893    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,142
14    63735954    rs10145453    T    G    324.23    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DB;DP=23;Dels=0.0;FS=10.307;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.031;QD=14.1;ReadPosRankSum=-1.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RHOJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316754    GT:AD:DP:GQ:PL    0/1:11,12:23:99:354,0,385
14    63747634    rs7146249    T    C    683.45    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=1.907;QD=17.99;ReadPosRankSum=0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RHOJ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316754    GT:AD:DP:GQ:PL    0/1:16,22:38:99:713,0,471
14    63779846    rs5809192    G    GA    2226.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=3;HaplotypeScore=123.5477;IndelType=I;MQ=59.89;MQ0=0;QD=39.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=GPHB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314140    GT:AD:DP:GQ:PL    1/1:3,54:57:99:2269,163,0
14    63784378    rs34096978    G    A    765.39    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=4.088;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.97;MQ0=0;MQRankSum=0.476;QD=15.01;ReadPosRankSum=-0.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=GPHB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314140    GT:AD:DP:GQ:PL    0/1:24,27:51:99:795,0,671
14    63784407    rs11382440    A    AG    2451.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=1;HaplotypeScore=224.2941;IndelType=I;MQ=60.17;MQ0=0;QD=43.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=GPHB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314140    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2494,169,0
14    64375985    rs2275018    G    T    582.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.212;DB;DP=40;Dels=0.0;FS=2.981;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.728;QD=14.56;ReadPosRankSum=-1.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:16,24:40:99:612,0,574
14    64416814    rs2775001    A    G    478.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=22.81;ReadPosRankSum=1.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:7,14:21:99:509,0,180
14    64416884    rs945025    G    A    68.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=7.58;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:5,4:9:98.17:98,0,162
14    64416898    rs2781426    T    G    109.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=13.7;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,142
14    64421392    rs1255874    G    A    313.91    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=2.051;QD=22.42;ReadPosRankSum=-0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:4,10:14:63.89:344,0,64
14    64423187    rs2792201    C    A    769.32    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.79;DB;DP=64;Dels=0.0;FS=3.371;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.011;QD=12.02;ReadPosRankSum=-1.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356081    GT:AD:DP:GQ:PL    0/1:35,29:64:99:799,0,1141
14    64428154    rs1255884    A    G    34.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341472    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
14    64434652    rs1255891    G    A    246.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=15.38;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:8,8:16:99:276,0,283
14    64434701    rs1255892    C    T    149.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=14.96;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:5,5:10:99:180,0,108
14    64449723    rs1255898    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
14    64457079    rs1255907    G    A    264.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=9.79;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:18,9:27:99:294,0,656
14    64457441    rs1273193    G    A    180.88    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.717;QD=16.44;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:5,6:11:99:211,0,174
14    64457638    rs1255908    T    G    519.64    PASS    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.254;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.826;QD=21.65;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:7,17:24:99:550,0,217
14    64460536    rs60596461    A    AT    242.29    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=32;FS=2.092;HRun=14;HaplotypeScore=173.3965;IndelType=I;MQ=56.65;MQ0=0;MQRankSum=-0.109;QD=7.57;ReadPosRankSum=0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:13,17:32:77.98:281,0,78
14    64462007    rs1255912    A    C    72.75    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=4.55;ReadPosRankSum=-0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:11,5:16:99:103,0,380
14    64462071    rs1255913    G    T    116.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.34;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:146,0,67
14    64468394    rs56169604    A    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
14    64468918    rs12147217    G    A    168.02    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.513;QD=9.88;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:10,7:17:99:198,0,334
14    64470159    rs35918931    ACT    A    249.28    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.931;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=69.1781;IndelType=D;MQ=61.07;MQ0=0;MQRankSum=-0.041;QD=12.46;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:12,8:20:99:288,0,560
14    64476680    rs7146588    T    A    453.23    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.393;DB;DP=44;Dels=0.0;FS=1.256;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.829;QD=10.3;ReadPosRankSum=-0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:25,19:44:99:483,0,824
14    64488881    rs17101566    T    G    180.56    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=13.89;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:7,6:13:99:211,0,245
14    64491457    rs74056279    C    A    128.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
14    64491695    rs4902264    T    C    658.68    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.195;DB;DP=42;Dels=0.0;FS=1.266;HRun=0;HaplotypeScore=0.9159;MQ=59.45;MQ0=0;MQRankSum=0.649;QD=15.68;ReadPosRankSum=-0.814;SNPEFF_AMINO_ACID_CHANGE=M1969T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64491630_64491749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:17,25:42:99:689,0,546
14    64494278    rs10151127    C    T    3874.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.72;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=L2161;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64494202_64494511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3875,286,0
14    64496749    rs4027402    C    T    394.44    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.152;DB;DP=34;Dels=0.0;FS=5.632;HRun=0;HaplotypeScore=0.6651;MQ=57.93;MQ0=0;MQRankSum=-0.27;QD=11.6;ReadPosRankSum=-0.342;SNPEFF_AMINO_ACID_CHANGE=A2284V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64496613_64496777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:16,18:34:99:424,0,455
14    64496763    rs11850509    T    C    437.84    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.415;DB;DP=31;Dels=0.0;FS=3.876;HRun=0;HaplotypeScore=0.9665;MQ=57.73;MQ0=0;MQRankSum=-0.938;QD=14.12;ReadPosRankSum=-0.676;SNPEFF_AMINO_ACID_CHANGE=L2289;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64496613_64496777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:16,15:31:99:468,0,423
14    64496872    rs3866737    G    C    378.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:411,30,0
14    64497547    rs4027403    G    A    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:74,0,28
14    64497930    rs4027404    G    A    2384.29    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.16;DB;DP=172;Dels=0.0;FS=1.968;HRun=1;HaplotypeScore=0.7887;MQ=59.46;MQ0=0;MQRankSum=-1.594;QD=13.86;ReadPosRankSum=-0.957;SNPEFF_AMINO_ACID_CHANGE=S2359N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64497734_64498075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:92,80:172:99:2414,0,2973
14    64498037    rs4027405    G    A    2345.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=A2395T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64497734_64498075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2378,181,0
14    64519035    rs1890908    A    G    1613.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=32.93;SNPEFF_AMINO_ACID_CHANGE=S2802G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64518275_64520375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344113    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1647,129,0
14    64519455    rs3829767    A    G    411.13    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.478;DB;DP=30;Dels=0.0;FS=1.367;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=13.7;ReadPosRankSum=-0.935;SNPEFF_AMINO_ACID_CHANGE=I2942V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64518275_64520375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344113    GT:AD:DP:GQ:PL    0/1:16,14:30:99:441,0,503
14    64520020    rs11847087    A    G    506.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.291;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6439;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=16.87;ReadPosRankSum=1.291;SNPEFF_AMINO_ACID_CHANGE=N3130S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64518275_64520375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344113    GT:AD:DP:GQ:PL    0/1:12,18:30:99:536,0,418
14    64520416    rs10138253    G    A    100.13    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=9.1;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557005    GT:AD:DP:GQ:PL    0/1:6,5:11:99:130,0,182
14    64522550    rs10676670    T    TAATAA    701.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=33.683;IndelType=I;MQ=56.98;MQ0=0;QD=70.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:1,8:10:27.09:743,27,0
14    64522674    rs8010911    G    C    332.25    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=16;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=-0.061;QD=20.77;ReadPosRankSum=0.306;SNPEFF_AMINO_ACID_CHANGE=D3253H;SNPEFF_CODON_CHANGE=Gat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64522662_64522984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344113    GT:AD:DP:GQ:PL    0/1:6,10:16:99:362,0,127
14    64522843    rs8010699    A    G    607.36    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=45;Dels=0.0;FS=6.884;HRun=0;HaplotypeScore=1.7653;MQ=59.49;MQ0=0;MQRankSum=-1.011;QD=13.5;ReadPosRankSum=0.455;SNPEFF_AMINO_ACID_CHANGE=H3309R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64522662_64522984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344113    GT:AD:DP:GQ:PL    0/1:19,26:45:99:637,0,607
14    64523043    rs35787394    TA    T    157.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=27.3338;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=0.248;QD=15.72;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:4,6:10:99:196,0,103
14    64523094    rs7153376    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
14    64529791    rs72718393    A    T    75.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.08;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:2,3:5:64.17:105,0,64
14    64532003    rs1255973    T    A    30.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:62,6,0
14    64532107    rs1255972    A    G    265.44    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.633;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=57.53;MQ0=0;MQRankSum=0.286;QD=13.97;ReadPosRankSum=-0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:9,10:19:99:295,0,316
14    64532414    rs8017952    T    A    63.04    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=57.63;MQ0=0;MQRankSum=0.322;QD=7.88;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:5,3:8:93.04:93,0,189
14    64537295    rs1255965    T    G    101.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.43;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    0/1:8,4:12:99:131,0,229
14    64537657    rs1255964    G    A    778.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:811,60,0
14    64540437    rs1255961    G    A    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
14    64542872    rs1255960    G    A    728.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261678    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:762,60,0
14    64548132    rs17101624    C    G    580.54    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=30;Dels=0.0;FS=1.497;HRun=0;HaplotypeScore=0.9578;MQ=59.23;MQ0=0;MQRankSum=-1.046;QD=19.35;ReadPosRankSum=0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    0/1:13,17:30:99:611,0,418
14    64548419    rs17101626    C    G    191.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9399;MQ=58.33;MQ0=0;MQRankSum=-0.555;QD=13.65;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    0/1:6,8:14:99:221,0,176
14    64554266    rs72720309    G    A    2257.54    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=182;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3249;MQ=59.13;MQ0=0;MQRankSum=-0.518;QD=12.4;ReadPosRankSum=-0.679;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    0/1:99,82:182:99:2288,0,3111
14    64554517    rs17101637    A    G    609.67    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.913;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=9.24;ReadPosRankSum=-0.007;SNPEFF_AMINO_ACID_CHANGE=V256;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64554389_64554574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357395    GT:AD:DP:GQ:PL    0/1:42,24:66:99:640,0,1409
14    64556271    rs72720312    T    C    443.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;MQRankSum=0.048;QD=12.31;ReadPosRankSum=0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    0/1:20,16:36:99:473,0,629
14    64556472    rs146429933    AAATAT    A    965.68    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=3.952;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=200.0805;IndelType=D;MQ=59.01;MQ0=0;MQRankSum=2.302;QD=26.1;ReadPosRankSum=0.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    0/1:18,19:37:99:1005,0,1068
14    64557444    rs1255949    G    A    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.91;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,146
14    64557567    rs10137916    C    T    685.90    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.66;DB;DP=44;Dels=0.0;FS=1.424;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.033;QD=15.59;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    0/1:23,21:44:99:716,0,722
14    64557734    rs10137972    A    C    243.02    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.55;MQ0=0;MQRankSum=0.718;QD=7.59;ReadPosRankSum=0.718;SNPEFF_AMINO_ACID_CHANGE=N367H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64557584_64557766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357395    GT:AD:DP:GQ:PL    0/1:22,9:32:99:273,0,668
14    64564527    rs8007972    C    T    705.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:738,54,0
14    64564680    rs17101661    G    A    1731.82    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=3.326;DB;DP=115;Dels=0.0;FS=3.513;HRun=0;HaplotypeScore=6.0902;MQ=59.4;MQ0=0;MQRankSum=-1.249;QD=15.06;ReadPosRankSum=0.182;SNPEFF_AMINO_ACID_CHANGE=R4041H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64564667_64564864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344113    GT:AD:DP:GQ:PL    0/1:51,64:115:99:1762,0,1305
14    64612845    rs11629287    C    T    1424    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.339;DB;DP=45;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.181;QD=31.64;ReadPosRankSum=-1.26;SNPEFF_AMINO_ACID_CHANGE=I1566;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64612786_64612941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357395    GT:AD:DP:GQ:PL    1/1:1,44:45:77.05:1457,77,0
14    64612858    rs10151658    C    A    1559.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.63;DB;DP=44;Dels=0.0;FS=3.647;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.394;QD=35.45;ReadPosRankSum=-1.654;SNPEFF_AMINO_ACID_CHANGE=L1571M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64612786_64612941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357395    GT:AD:DP:GQ:PL    1/1:1,43:44:82.16:1593,82,0
14    64625181    rs17751454    T    A    80.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
14    64631751    rs4027395    T    G    136.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557024    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:169,15,0
14    64637147    rs7161192    C    A    819.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=L2119;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64636946_64637180;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357395    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:853,63,0
14    64655161    rs1255986    C    T    368.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:402,33,0
14    64656855    rs2256191    T    C    1302.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.98;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=L2365;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64656789_64656955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357395    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1335,105,0
14    64669771    rs6573548    C    T    242.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542956    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
14    64675895    rs1152593    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555241    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
14    64676098    rs1152592    A    G    653.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=28.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555241    GT:AD:DP:GQ:PL    1/1:0,21:23:54.17:686,54,0
14    64680848    rs1152591    A    G    980.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7779;MQ=58.63;MQ0=0;QD=28.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553801    GT:AD:DP:GQ:PL    1/1:0,34:34:87.24:1014,87,0
14    64681193    rs1152590    C    T    584.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553806    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:618,48,0
14    64686125    rs35648226    G    T    426.71    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.891;DB;DP=33;Dels=0.0;FS=7.574;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.486;QD=12.93;ReadPosRankSum=-0.847;SNPEFF_AMINO_ACID_CHANGE=L127;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64685926_64686128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441438    GT:AD:DP:GQ:PL    0/1:17,16:33:99:457,0,578
14    64686207    rs915057    A    G    334.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=37.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557084    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
14    64688175    rs1152588    G    C    2161.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=36.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557084    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2194,160,0
14    64691644    rs35455974    AT    A    230.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=18;FS=0.0;HRun=14;HaplotypeScore=90.5913;IndelType=D;MQ=61.12;MQ0=0;MQRankSum=1.504;QD=12.81;ReadPosRankSum=1.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344288    GT:AD:DP:GQ:PL    1/1:2,16:18:30.08:273,30,0
14    64694195    rs928554    C    T    2176.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=37.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344288    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2210,166,0
14    64699816    rs4986938    C    T    795.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=31.84;ReadPosRankSum=0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267525    GT:AD:DP:GQ:PL    1/1:1,24:25:26.99:829,27,0
14    64746933    rs5809225    G    GA    629.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.261;DB;DP=28;FS=0.0;HRun=9;HaplotypeScore=60.3513;IndelType=I;MQ=59.33;MQ0=0;MQRankSum=0.946;QD=22.47;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267525    GT:AD:DP:GQ:PL    1/1:7,21:28:40.12:671,40,0
14    64855041    rs1076991    T    C    766.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_AMINO_ACID_CHANGE=W22R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64854958_64855186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216605    GT:AD:DP:GQ:PL    1/1:0,26:26:63.18:799,63,0
14    64882380    rs1950902    A    G    999.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=K114R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64882357_64882457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555252    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1033,75,0
14    64886426    rs2295640    C    G    376.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554739    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
14    64902493    rs3818240    T    C    170.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556025    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
14    64905976    rs45618332    C    T    340.13    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.791;QD=30.92;ReadPosRankSum=-0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556025    GT:AD:DP:GQ:PL    0/1:1,10:11:5.47:370,0,5
14    64911627    rs1256143    T    C    197.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554677    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
14    64935411    rs2230491    C    T    4685.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DB;DP=132;Dels=0.0;FS=6.634;HRun=0;HaplotypeScore=4.9511;MQ=59.33;MQ0=0;MQRankSum=1.678;QD=35.5;ReadPosRankSum=1.705;SNPEFF_AMINO_ACID_CHANGE=P100L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64933825_64936425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320636    GT:AD:DP:GQ:PL    1/1:1,131:132:99:4686,343,0
14    64935720    rs1256149    C    T    4146.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=59.58;MQ0=0;QD=37.7;SNPEFF_AMINO_ACID_CHANGE=T203I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64933825_64936425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320636    GT:AD:DP:GQ:PL    1/1:0,110:110:99:4147,307,0
14    64947181    rs8003790    C    T    2268.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=52.72;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555220    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2301,178,0
14    64953580    rs10132969    T    A    445.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555220    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:479,39,0
14    64953591    rs10143839    C    T    488.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555220    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:521,39,0
14    64988114    rs10687678    C    CAA    1989.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=1;HaplotypeScore=86.8658;IndelType=I;MQ=56.68;MQ0=0;QD=55.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBTB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358738    GT:AD:DP:GQ:PL    1/1:7,29:36:99:2032,105,0
14    64988279    rs28626711    A    G    3451.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7653;MQ=59.15;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=E19;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64988205_64990120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBTB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358738    GT:AD:DP:GQ:PL    1/1:0,103:104:99:3452,256,0
14    64988924    rs10133411    T    C    1370.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=31.87;SNPEFF_AMINO_ACID_CHANGE=H234;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_64988205_64990120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZBTB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358738    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1404,114,0
14    65008251    rs1063391    C    T    1482.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.63;MQ0=0;QD=29.07;SNPEFF_AMINO_ACID_CHANGE=D228;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_65007186_65009952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247207    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1515,114,0
14    65016702    rs7156953    T    G    90.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.19;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_14_65016620_65016784;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298705    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:123,9,0
14    65032226    rs8007313    C    T    938.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555645    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:971,72,0
14    65041483    rs9671808    A    G    326.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298705    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
14    65066813    rs7148289    C    T    67.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.02;MQ0=0;QD=22.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-973N13.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556933    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:99,9,0
14    65066986    rs61987039    T    C    1167.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.45;MQ0=0;QD=27.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-973N13.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556933    GT:AD:DP:GQ:PL    1/1:0,41:42:93.28:1201,93,0
14    65230358    rs94788    C    T    187.34    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.445;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.119;QD=7.81;ReadPosRankSum=-0.835;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389720    GT:AD:DP:GQ:PL    0/1:15,9:24:99:217,0,537
14    65233900    rs60545775    G    A    1264.60    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=5.843;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=59.63;MQ0=0;MQRankSum=0.202;QD=20.07;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542694    GT:AD:DP:GQ:PL    0/1:26,37:63:99:1295,0,610
14    65239877    rs92070    C    T    146.56    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.729;QD=11.27;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:6,7:13:99:177,0,136
14    65239894    rs747860    C    T    170.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=12.21;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:7,7:14:99:201,0,237
14    65242044    rs184528    C    T    263.91    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=13.89;ReadPosRankSum=0.755;SNPEFF_AMINO_ACID_CHANGE=A1547;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_65241843_65242121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389720    GT:AD:DP:GQ:PL    0/1:9,10:19:99:294,0,222
14    65245863    rs1741489    C    G    129.58    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=9.97;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:7,6:13:99:160,0,179
14    65245956    rs1741488    C    T    247.14    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.241;QD=14.54;ReadPosRankSum=0.914;SNPEFF_AMINO_ACID_CHANGE=V1494;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_65245875_65245964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389720    GT:AD:DP:GQ:PL    0/1:9,8:17:99:277,0,214
14    65245962    rs1741487    A    G    234.41    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.529;QD=13.79;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=L1492;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_65245875_65245964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389720    GT:AD:DP:GQ:PL    0/1:9,8:17:99:264,0,208
14    65246006    rs1741486    G    A    65.89    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.387;QD=5.99;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:6,5:11:95.89:96,0,181
14    65246040    rs2357726    G    A    69.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=13.81;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:2,3:5:69.42:99,0,69
14    65246227    rs3819932    C    A    154.49    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=22.07;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:1,6:7:23.70:184,0,24
14    65246310    rs1695765    A    G    168.33    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.002;QD=10.52;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:6,10:16:99:198,0,194
14    65246312    rs1695764    G    C    206.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.225;QD=13.77;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:6,9:15:99:236,0,166
14    65246350    rs1741485    A    G    265.84    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=21;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=12.66;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:10,11:21:99:296,0,346
14    65246623    rs1626923    T    C    1362.35    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.527;DB;DP=106;Dels=0.0;FS=2.885;HRun=1;HaplotypeScore=3.1438;MQ=59.56;MQ0=0;MQRankSum=0.577;QD=12.85;ReadPosRankSum=-0.525;SNPEFF_AMINO_ACID_CHANGE=R1431;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_65246443_65246649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389720    GT:AD:DP:GQ:PL    0/1:50,56:106:99:1392,0,1554
14    65250939    rs229634    A    G    178.33    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.821;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.71;QD=9.91;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335612    GT:AD:DP:GQ:PL    0/1:8,10:18:99:208,0,212
14    65253232    rs77806    T    C    538.25    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=43;Dels=0.0;FS=12.527;HRun=2;HaplotypeScore=2.2859;MQ=53.91;MQ0=0;MQRankSum=-0.081;QD=12.52;ReadPosRankSum=0.503;SNPEFF_AMINO_ACID_CHANGE=N1151D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_65253122_65253878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389720    GT:AD:DP:GQ:PL    0/1:14,29:43:99:568,0,343
14    65289978    rs179338    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542895    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
14    65470831    rs12587546    A    G    38.55    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=4.28;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341653    GT:AD:DP:GQ:PL    0/1:5,4:9:68.54:69,0,182
14    65472874    rs56964460    CT    C    80.90    QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=0.629;DB;DP=141;FS=17.9;HRun=17;HaplotypeScore=1022.8067;IndelType=D;MQ=51.01;MQ0=0;MQRankSum=-0.068;QD=0.57;ReadPosRankSum=1.168;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341653    GT:AD:DP:GQ:PL    0/1:81,30:141:99:120,0,1174
14    65473196    rs7148590    G    A    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL139022.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246166    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:66,0,33
14    65543102    rs45604339    C    T    736.77    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.786;DB;DP=47;Dels=0.02;FS=0.0;HRun=2;HaplotypeScore=3.9033;MQ=58.55;MQ0=0;MQRankSum=-0.772;QD=15.35;ReadPosRankSum=0.353;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441116    GT:AD:DP:GQ:PL    0/1:22,25:47:99:767,0,688
14    65550816    rs7159443    T    A    638.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=44;Dels=0.0;FS=2.175;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.43;QD=14.5;ReadPosRankSum=-0.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284165    GT:AD:DP:GQ:PL    0/1:22,22:44:99:668,0,619
14    65568215    rs2781373    G    A    263.15    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=17;Dels=0.0;FS=8.82;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.491;QD=15.48;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246163    GT:AD:DP:GQ:PL    0/1:8,9:17:99:293,0,209
14    66028446    rs3783711    A    G    1360.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=35.79;SNPEFF_AMINO_ACID_CHANGE=Q55;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_66028055_66028484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360689    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1393,102,0
14    66028505    rs3825639    T    C    706.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553924    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:739,60,0
14    66082573    rs8012278    A    G    791.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358307    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:825,60,0
14    66188882    rs4143898    T    A    123.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554765    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
14    66209190    rs1054218    C    G    335.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342677    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
14    66955828    rs12896419    C    T    2003.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00238;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359454    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2036,156,0
14    67555878    rs12323748    A    G    164.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=23.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPHN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305960    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:198,15,0
14    67814219    rs113348396    C    CT    295.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;DB;DP=21;FS=0.0;HRun=14;HaplotypeScore=78.0311;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=1.042;QD=14.06;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553687    GT:AD:DP:GQ:PL    1/1:6,13:21:37.89:337,38,0
14    67819567    rs11351002    CA    C    1352.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=11;HaplotypeScore=178.97;IndelType=D;MQ=60.88;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP6V1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216442    GT:AD:DP:GQ:PL    1/1:2,56:61:99:1395,174,0
14    68022410    rs3742868    C    T    418.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:451,33,0
14    68022414    rs3742869    C    T    127.99    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=11.64;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:6,5:11:99:158,0,213
14    68024134    rs3825723    A    T    920.96    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.972;DB;DP=67;Dels=0.0;FS=0.944;HRun=0;HaplotypeScore=2.5316;MQ=60.0;MQ0=0;MQRankSum=-1.153;QD=13.75;ReadPosRankSum=1.578;SNPEFF_AMINO_ACID_CHANGE=Q113L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68023986_68024135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:37,30:67:99:951,0,1042
14    68028538    rs11628043    A    G    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
14    68029313    rs2236235    G    A    230.52    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.933;QD=12.81;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=R322Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68028854_68029611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:10,8:18:99:261,0,345
14    68035879    rs3825725    A    G    1001.25    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.127;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=0.98;QD=13.72;ReadPosRankSum=1.251;SNPEFF_AMINO_ACID_CHANGE=T430A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68035855_68035933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1031,0,1116
14    68038697    rs2236234    C    G    322.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:355,27,0
14    68038729    rs2236233    A    G    95.93    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=13.7;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,103
14    68039027    rs2236231    A    G    139.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=11.63;ReadPosRankSum=1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:6,6:12:99:170,0,214
14    68039898    rs117185632    C    G    62.75    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=3.3;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:13,6:19:92.74:93,0,457
14    68040389    rs11625701    T    C    34.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.89;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:5,2:7:64.22:64,0,186
14    68040681    rs79889192    A    G    51    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=13;Dels=0.0;FS=2.774;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.085;QD=3.92;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:10,3:13:80.99:81,0,368
14    68041124    rs1555400    G    C    184.93    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=18.49;ReadPosRankSum=1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:3,7:10:98.14:215,0,98
14    68041915    rs4902489    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
14    68041931    rs4899209    A    G    67.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:99,9,0
14    68042496    rs4902491    A    G    173.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,9:9:18.04:206,18,0
14    68042574    rs11158685    A    G    167.69    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.858;DB;DP=16;Dels=0.0;FS=6.726;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=10.48;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=H735R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68042540_68042722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:9,7:16:99:198,0,241
14    68044005    rs4902492    C    T    306.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:340,24,0
14    68045753    rs7152499    T    C    236.48    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.747;QD=29.56;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:1,7:8:17.15:266,0,17
14    68045840    rs10635755    C    CTTCT    1733.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=85.2959;IndelType=I;MQ=58.16;MQ0=1;QD=72.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:2,21:23:66.21:1775,66,0
14    68045935    rs6573781    G    A    218.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.888;DB;DP=21;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.9789;MQ=59.94;MQ0=0;MQRankSum=0.959;QD=10.4;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=S978;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68045851_68046028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:12,9:21:99:248,0,298
14    68046275    rs4902493    C    T    119.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
14    68048759    rs45451797    C    T    461.18    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=33;Dels=0.0;FS=2.21;HRun=1;HaplotypeScore=0.9159;MQ=59.43;MQ0=0;MQRankSum=0.27;QD=13.98;ReadPosRankSum=-1.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:16,17:33:99:491,0,516
14    68048764    rs3809389    T    C    557.61    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.48;MQ0=0;MQRankSum=-0.634;QD=15.49;ReadPosRankSum=-1.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:17,19:36:99:588,0,529
14    68049118    rs75339412    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
14    68050687    rs76327566    A    G    1452.13    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.539;DB;DP=109;Dels=0.0;FS=0.708;HRun=0;HaplotypeScore=3.4192;MQ=59.4;MQ0=0;MQRankSum=0.666;QD=13.32;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    0/1:59,50:109:99:1482,0,1743
14    68052983    rs749269    G    A    264.18    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.607;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.237;QD=9.78;ReadPosRankSum=-1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216452    GT:AD:DP:GQ:PL    0/1:16,11:27:99:294,0,544
14    68053802    rs734028    T    C    1519.65    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.649;DB;DP=126;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=2.001;QD=12.06;ReadPosRankSum=0.233;SNPEFF_AMINO_ACID_CHANGE=Y257H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68053791_68054265;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417684    GT:AD:DP:GQ:PL    0/1:69,57:126:99:1550,0,2132
14    68053977    rs6573783    A    C    3159.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=59.76;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=N315T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68053791_68054265;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417684    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3192,247,0
14    68060375    rs2038490    C    T    293.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329153    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
14    68066949    rs11547225    G    A    118.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_68066741_68066965;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216452    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
14    68067123    rs78509795    A    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216452    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
14    68108747    rs12896052    G    A    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261783    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:75,0,26
14    68113293    rs742869    G    A    408.09    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=3.487;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.634;QD=20.4;ReadPosRankSum=-0.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTI1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216456    GT:AD:DP:GQ:PL    0/1:7,13:20:99:438,0,167
14    68115001    rs3742879    A    G    103.88    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=11.54;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556491    GT:AD:DP:GQ:PL    0/1:4,5:9:99:134,0,136
14    68151984    rs2273160    C    G    222.62    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.134;QD=18.55;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381346    GT:AD:DP:GQ:PL    0/1:5,7:12:99:253,0,174
14    68191109    rs33931118    GTTT    G    435.10    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.187;DB;DP=34;FS=5.775;HRun=17;HaplotypeScore=325.9497;IndelType=D;MQ=50.6;MQ0=0;MQRankSum=1.927;QD=12.8;ReadPosRankSum=2.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547463    GT:AD:DP:GQ:PL    0/1:6,18:34:99:474,0,264
14    68191368    rs61991867    G    A    399.29    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.071;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.372;QD=22.18;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547463    GT:AD:DP:GQ:PL    0/1:4,14:18:99:429,0,109
14    68192653    rs7156725    G    C    1004.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=38.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394455    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1037,75,0
14    68196636    rs718212    C    T    138.73    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=17.34;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552873    GT:AD:DP:GQ:PL    0/1:3,5:8:99:169,0,99
14    68220499    rs111891063    A    AATC    299.94    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=20;FS=2.185;HRun=0;HaplotypeScore=67.9506;IndelType=I;MQ=59.0;MQ0=0;MQRankSum=-0.395;QD=15.0;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:14,6:20:99:339,0,554
14    68228790    rs8012365    A    T    235.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    1/1:0,11:11:27.05:268,27,0
14    68232767    rs8006137    T    C    73.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
14    68232797    rs17782871    C    G    84.51    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.9;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:1,4:5:27.20:114,0,27
14    68234539    rs3742883    T    C    1685.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=N1870S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68234421_68234557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411699    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1718,129,0
14    68236522    rs2295111    G    A    185.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=13.27;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:7,7:14:99:216,0,219
14    68238687    rs1474796    T    C    118.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:151,12,0
14    68242898    rs12886915    G    A    560.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.321;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.402;QD=13.36;ReadPosRankSum=1.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557204    GT:AD:DP:GQ:PL    0/1:21,21:42:99:591,0,727
14    68244202    rs767972    C    T    240.12    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=1.107;QD=14.12;ReadPosRankSum=-0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557204    GT:AD:DP:GQ:PL    0/1:9,8:17:99:270,0,272
14    68246855    rs2295106    T    A    65.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:97,9,0
14    68246876    rs2295107    C    T    242.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:275,24,0
14    68248281    rs2235962    C    T    387.63    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.136;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.062;QD=12.5;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:16,15:31:99:418,0,443
14    68249499    rs2235967    C    T    2998.61    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.83;DB;DP=227;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.92;MQ0=0;MQRankSum=-1.254;QD=13.21;ReadPosRankSum=-1.769;SNPEFF_AMINO_ACID_CHANGE=C1436Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68249497_68250242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411699    GT:AD:DP:GQ:PL    0/1:122,105:227:99:3029,0,3693
14    68252852    rs112787369    A    T    585.51    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.83;MQ0=0;MQRankSum=-1.002;QD=14.64;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=S1019T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68252831_68252950;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411699    GT:AD:DP:GQ:PL    0/1:19,21:40:99:616,0,559
14    68257083    rs10131048    T    C    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:71,0,70
14    68264867    rs12891164    A    G    606.66    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=49;Dels=0.0;FS=1.164;HRun=3;HaplotypeScore=0.9992;MQ=59.53;MQ0=0;MQRankSum=-0.01;QD=12.38;ReadPosRankSum=0.511;SNPEFF_AMINO_ACID_CHANGE=P683;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68264731_68265339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411699    GT:AD:DP:GQ:PL    0/1:26,23:49:99:637,0,820
14    68265616    rs7159982    C    A    40.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.736;QD=10.08;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:2,2:4:30.29:70,0,30
14    68273412    rs145323881    GT    G    503.33    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.074;DB;DP=29;FS=0.0;HRun=2;HaplotypeScore=111.0829;IndelType=D;MQ=60.37;MQ0=0;MQRankSum=1.752;QD=17.36;ReadPosRankSum=0.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:12,17:29:99:542,0,401
14    68273430    rs181576    A    G    202.79    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.861;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.05;QD=9.22;ReadPosRankSum=0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:14,8:22:99:233,0,417
14    68274020    rs181572    C    G    138.35    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=7.69;ReadPosRankSum=-2.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    0/1:10,8:18:99:168,0,355
14    68276125    rs71425359    C    A    30.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=10.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347230    GT:AD:DP:GQ:PL    1/1:0,3:3:6:62,6,0
14    68280848    rs181563    A    C    234.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.965;QD=16.73;ReadPosRankSum=-1.892;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZFYVE26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553399    GT:AD:DP:GQ:PL    0/1:6,8:14:99:264,0,208
14    68290372    rs17783124    T    G    89.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=5.6;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    0/1:10,6:16:99:120,0,326
14    68290426    rs28604984    T    C    45.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.1;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    0/1:6,3:9:75.90:76,0,223
14    68290464    rs28623567    G    A    34.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.69;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    0/1:2,2:4:64.74:65,0,70
14    68301767    rs34564590    G    GA    458.90    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.709;DB;DP=28;FS=8.541;HRun=8;HaplotypeScore=65.6671;IndelType=I;MQ=60.39;MQ0=0;MQRankSum=0.204;QD=16.39;ReadPosRankSum=-0.728;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    0/1:12,16:28:99:498,0,145
14    68302127    rs17783160    A    G    37.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.35;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553334    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:67,0,32
14    68331675    rs1474939    A    T    190.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:223,21,0
14    68353893    rs34594234    A    G    820.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.14;MQ0=0;MQRankSum=1.142;QD=15.19;ReadPosRankSum=0.709;SNPEFF_AMINO_ACID_CHANGE=K243R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_68353738_68353921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    0/1:27,27:54:99:850,0,907
14    68773296    rs60295618    AC    A    758.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=191.209;IndelType=D;MQ=59.94;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    1/1:0,21:21:63.17:800,63,0
14    68773353    rs2180770    G    A    750.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=27.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    1/1:0,27:27:57.19:784,57,0
14    68773469    rs3784104    A    G    343.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:376,27,0
14    68888534    rs8013236    G    A    1565.84    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.785;DB;DP=100;Dels=0.0;FS=1.64;HRun=0;HaplotypeScore=0.6651;MQ=50.31;MQ0=1;MQRankSum=-3.215;QD=15.66;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    0/1:44,56:100:99:1596,0,1210
14    68888659    rs10747299    T    C    1595.96    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.827;DB;DP=119;Dels=0.0;FS=7.098;HRun=0;HaplotypeScore=0.6651;MQ=55.2;MQ0=0;MQRankSum=-2.013;QD=13.41;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    0/1:62,57:119:99:1626,0,2079
14    68935789    rs2525505    T    C    1646.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342389    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1679,123,0
14    69077688    rs17834971    G    A    141.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=15.7;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390683    GT:AD:DP:GQ:PL    0/1:3,6:9:99:171,0,100
14    69077699    rs56104115    T    A    329.47    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=23.53;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390683    GT:AD:DP:GQ:PL    0/1:4,10:14:99:359,0,124
14    69117387    rs8021657    A    G    92.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390683    GT:AD:DP:GQ:PL    0/1:8,4:12:99:122,0,215
14    69117512    rs8023214    T    C    402.96    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.204;QD=9.37;ReadPosRankSum=-1.102;SNPEFF_AMINO_ACID_CHANGE=C351R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_69117498_69117562;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RAD51B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390683    GT:AD:DP:GQ:PL    0/1:25,17:43:99:433,0,816
14    69262441    rs3742887    A    G    706.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP36L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553375    GT:AD:DP:GQ:PL    1/1:0,27:27:63.18:740,63,0
14    69263074    rs6573857    G    A    797.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP36L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336440    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:830,66,0
14    69376658    rs743128    A    C    840.51    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.876;DB;DP=64;Dels=0.0;FS=9.311;HRun=4;HaplotypeScore=2.966;MQ=59.64;MQ0=0;MQRankSum=1.441;QD=13.13;ReadPosRankSum=0.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553779    GT:AD:DP:GQ:PL    0/1:36,28:64:99:870,0,1038
14    69392264    rs4899272    T    G    723.15    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.842;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.008;QD=12.05;ReadPosRankSum=0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553659    GT:AD:DP:GQ:PL    0/1:31,29:60:99:753,0,869
14    69392445    rs3742897    G    A    588.28    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.514;DB;DP=56;Dels=0.0;FS=4.782;HRun=0;HaplotypeScore=3.1706;MQ=59.25;MQ0=0;MQRankSum=0.551;QD=10.51;ReadPosRankSum=-1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193403    GT:AD:DP:GQ:PL    0/1:31,24:56:99:618,0,997
14    69445646    rs4902685    A    G    207    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193403    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:240,21,0
14    69521345    rs61741172    G    A    782.17    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.076;DB;DP=65;Dels=0.0;FS=1.329;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=-0.772;QD=12.03;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=T604;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_69518572_69522328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554215    GT:AD:DP:GQ:PL    0/1:34,24:65:99:812,0,1050
14    69529031    rs72718277    T    C    212.46    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=22;Dels=0.0;FS=2.172;HRun=0;HaplotypeScore=1.7552;MQ=58.95;MQ0=0;MQRankSum=-1.847;QD=9.66;ReadPosRankSum=0.833;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556111    GT:AD:DP:GQ:PL    0/1:13,8:22:99:242,0,374
14    69589249    rs7141235    G    A    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341516    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
14    69695792    rs3742899    G    A    448.63    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.207;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.378;QD=9.97;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000193422    GT:AD:DP:GQ:PL    0/1:28,17:45:99:479,0,890
14    69697289    rs35010854    G    A    897.08    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.633;DB;DP=75;Dels=0.0;FS=1.963;HRun=1;HaplotypeScore=4.7431;MQ=59.13;MQ0=0;MQRankSum=-0.698;QD=11.96;ReadPosRankSum=0.351;SNPEFF_AMINO_ACID_CHANGE=D106N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_69697189_69697315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409014    GT:AD:DP:GQ:PL    0/1:39,36:75:99:927,0,1196
14    69697453    rs1013762    C    G    106.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.64;ReadPosRankSum=1.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413191    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,219
14    69704553    rs8007859    G    T    304.58    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.56;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=0.363;QD=13.24;ReadPosRankSum=-0.824;SNPEFF_AMINO_ACID_CHANGE=Q393H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_69704292_69704648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409014    GT:AD:DP:GQ:PL    0/1:10,13:23:99:335,0,319
14    69787224    rs68043164    GAAAAAAAGAA    G    362.71    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=102.966;IndelType=D;MQ=59.47;MQ0=0;MQRankSum=1.179;QD=40.3;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337827    GT:AD:DP:GQ:PL    0/1:2,7:9:99:402,0,265
14    69791308    rs2045194    T    A    118.42    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=9.87;ReadPosRankSum=-0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554317    GT:AD:DP:GQ:PL    0/1:7,5:12:99:148,0,255
14    69795199    rs12879377    G    A    1236.22    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.395;DB;DP=66;Dels=0.0;FS=0.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.724;QD=18.73;ReadPosRankSum=1.552;SNPEFF_AMINO_ACID_CHANGE=V201M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_69795167_69795288;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337827    GT:AD:DP:GQ:PL    0/1:27,39:66:99:1266,0,669
14    69798284    rs1147461    G    A    712.70    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.078;DB;DP=38;Dels=0.0;FS=4.247;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.924;QD=18.76;ReadPosRankSum=0.611;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337827    GT:AD:DP:GQ:PL    0/1:14,24:38:99:743,0,437
14    69799892    rs1275677    A    G    640.89    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=35;Dels=0.0;FS=4.099;HRun=1;HaplotypeScore=1.9664;MQ=58.67;MQ0=0;MQRankSum=0.739;QD=18.31;ReadPosRankSum=2.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337827    GT:AD:DP:GQ:PL    0/1:12,23:35:99:671,0,320
14    69806055    rs1275683    A    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337827    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    69808627    rs1275685    G    C    47.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=11.99;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556677    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:78,0,33
14    69818549    rs45443301    A    G    120.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GALNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553669    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
14    69921479    rs2232057    A    G    262.55    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=13.82;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556125    GT:AD:DP:GQ:PL    0/1:9,10:19:99:293,0,305
14    69921674    rs2232058    T    C    189.81    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=15.82;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC39A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556125    GT:AD:DP:GQ:PL    0/1:5,7:12:99:220,0,172
14    69988954    rs10146531    T    G    381.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLEKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322564    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:414,33,0
14    69992873    rs8004574    A    G    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLEKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322564    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
14    69994473    rs1885400    C    G    371.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLEKHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322564    GT:AD:DP:GQ:PL    1/1:0,19:19:39.04:404,39,0
14    70235741    rs3104    G    A    116.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.45;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555412    GT:AD:DP:GQ:PL    0/1:2,4:6:64.93:147,0,65
14    70351983    .    C    CTT    131.44    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.225;DP=15;FS=0.0;HRun=15;HaplotypeScore=100.4323;IndelType=I;MQ=51.27;MQ0=0;MQRankSum=0.627;QD=8.76;ReadPosRankSum=-0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361956    GT:AD:DP:GQ:PL    0/1:6,5:15:99:170,0,102
14    70352477    rs55954985    G    A    250.26    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.949;DB;DP=27;Dels=0.0;FS=6.219;HRun=0;HaplotypeScore=0.5784;MQ=56.22;MQ0=0;MQRankSum=0.962;QD=9.27;ReadPosRankSum=-0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361956    GT:AD:DP:GQ:PL    0/1:16,11:27:99:280,0,447
14    70480215    rs1885482    T    A    586.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.372;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.058;QD=14.31;ReadPosRankSum=-0.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557483    GT:AD:DP:GQ:PL    0/1:20,20:40:99:617,0,568
14    70489680    rs227405    T    G    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361956    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    70490264    rs2281663    A    G    274.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.247;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.038;QD=13.7;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361956    GT:AD:DP:GQ:PL    0/1:10,10:20:99:304,0,316
14    70496919    rs34504720    CT    C    92.40    QDFilter2    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.182;DB;DP=64;FS=5.18;HRun=17;HaplotypeScore=450.1575;IndelType=D;MQ=48.49;MQ0=0;MQRankSum=2.793;QD=1.42;ReadPosRankSum=2.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361956    GT:AD:DP:GQ:PL    0/1:40,17:64:56.74:131,0,57
14    70518958    rs72729825    T    C    223.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.473;QD=13.96;ReadPosRankSum=0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216568    GT:AD:DP:GQ:PL    0/1:8,8:16:99:253,0,276
14    70530706    rs150956    C    G    880    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.086;DB;DP=55;Dels=0.0;FS=1.513;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.844;QD=16.0;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216568    GT:AD:DP:GQ:PL    0/1:28,27:55:99:910,0,888
14    70634087    rs2114024    A    G    1548.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5396;MQ=58.05;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=R351;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70633356_70635201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356921    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1581,126,0
14    70634546    rs7161524    C    T    407.87    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=44;Dels=0.0;FS=1.232;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.012;QD=9.27;ReadPosRankSum=0.207;SNPEFF_AMINO_ACID_CHANGE=K198;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70633356_70635201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356921    GT:AD:DP:GQ:PL    0/1:28,16:44:99:438,0,964
14    70712324    rs34402526    CA    C    413.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=11;HaplotypeScore=109.8501;IndelType=D;MQ=58.99;MQ0=0;QD=17.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    1/1:2,18:23:60.01:456,60,0
14    70712731    .    T    G    678.62    MQFilter40    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.149;DP=102;Dels=0.0;FS=5.745;HRun=1;HaplotypeScore=3.2791;MQ=32.78;MQ0=10;MQRankSum=-2.611;QD=6.65;ReadPosRankSum=-0.229;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:57,45:102:99:709,0,1430
14    70712880    rs2296918    A    C    214.08    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.87;DB;DP=37;Dels=0.0;FS=17.284;HRun=0;HaplotypeScore=0.9992;MQ=45.19;MQ0=7;MQRankSum=0.682;QD=5.79;ReadPosRankSum=-0.374;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:20,17:37:99:244,0,688
14    70713586    rs150958502    T    G    205.38    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=1.351;DB;DP=37;Dels=0.0;FS=1.512;HRun=0;HaplotypeScore=0.9997;MQ=57.39;MQ0=0;MQRankSum=-1.043;QD=5.55;ReadPosRankSum=0.427;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:27,10:37:99:235,0,847
14    70713720    rs34309925    AATC    A    1552.47    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=4.028;DB;DP=47;FS=3.166;HRun=0;HaplotypeScore=204.0159;IndelType=D;MQ=47.55;MQ0=2;MQRankSum=4.556;QD=31.05;ReadPosRankSum=-3.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:16,34:47:99:1592,0,626
14    70713961    .    G    A    420.75    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=4.088;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.23;MQ0=4;MQRankSum=-0.846;QD=8.41;ReadPosRankSum=0.141;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:24,26:50:99:451,0,696
14    70713962    .    T    C    427.12    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.832;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.23;MQ0=4;MQRankSum=-0.239;QD=8.54;ReadPosRankSum=0.421;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:24,26:50:99:457,0,825
14    70713981    rs12586570    A    G    1709.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.94;MQ0=5;QD=27.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1743,147,0
14    70714091    rs117006186    C    T    1112.76    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=3.986;DB;DP=131;Dels=0.0;FS=0.716;HRun=0;HaplotypeScore=2.1356;MQ=50.1;MQ0=11;MQRankSum=2.704;QD=8.49;ReadPosRankSum=-0.157;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:89,42:131:99:1143,0,2261
14    70714162    rs4899340    A    G    2020.40    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.698;DB;DP=130;Dels=0.0;FS=12.588;HRun=0;HaplotypeScore=12.7759;MQ=47.48;MQ0=11;MQRankSum=-1.035;QD=15.54;ReadPosRankSum=-0.086;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:47,83:130:99:2050,0,1491
14    70714259    rs7144638    A    G    2527.16    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.836;DB;DP=100;Dels=0.0;FS=4.877;HRun=3;HaplotypeScore=9.4215;MQ=32.23;MQ0=13;MQRankSum=-1.528;QD=25.27;ReadPosRankSum=-1.039;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    1/1:1,99:100:99:2560,186,0
14    70714560    .    GA    G    104.16    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DP=13;FS=0.0;HRun=3;HaplotypeScore=31.0718;IndelType=D;MQ=52.63;MQ0=0;MQRankSum=1.545;QD=8.01;ReadPosRankSum=-0.978;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-486O13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529267    GT:AD:DP:GQ:PL    0/1:8,5:13:99:143,0,303
14    70795668    rs2332419    C    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389912    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
14    70795712    rs17566073    T    G    142.48    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=17.81;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389912    GT:AD:DP:GQ:PL    0/1:3,5:8:98.92:172,0,99
14    70795756    rs7157430    G    T    370.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389912    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:404,33,0
14    70795769    rs56128802    T    A    411.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=29.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389912    GT:AD:DP:GQ:PL    1/1:0,14:14:42.10:444,42,0
14    70795772    rs10648369    T    TAC    769.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=148.6886;IndelType=I;MQ=48.92;MQ0=0;QD=48.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389912    GT:AD:DP:GQ:PL    1/1:2,14:16:42.14:812,42,0
14    70809496    rs72733767    A    G    476.59    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.308;DB;DP=43;Dels=0.0;FS=1.543;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=1.145;QD=11.08;ReadPosRankSum=-0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389912    GT:AD:DP:GQ:PL    0/1:25,18:43:99:507,0,852
14    70924072    rs4143920    A    G    768.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.98;MQ0=0;QD=29.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:0,26:26:69.19:801,69,0
14    70924450    rs58247196    C    T    1563.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.98;MQ0=9;QD=24.82;SNPEFF_AMINO_ACID_CHANGE=V78;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1597,138,0
14    70924462    rs3751523    A    G    1102.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.71;MQ0=8;QD=22.98;SNPEFF_AMINO_ACID_CHANGE=L82;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1136,99,0
14    70924501    rs8010994    C    G    1529.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.28;MQ0=9;QD=28.32;SNPEFF_AMINO_ACID_CHANGE=D95E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1562,129,0
14    70924602    rs72735759    T    G    2777.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.175;DB;DP=96;Dels=0.0;FS=4.823;HRun=0;HaplotypeScore=0.0;MQ=51.14;MQ0=7;MQRankSum=-0.776;QD=28.93;ReadPosRankSum=1.613;SNPEFF_AMINO_ACID_CHANGE=F129C;SNPEFF_CODON_CHANGE=tTt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:1,95:96:99:2810,190,0
14    70924852    rs3829455    A    C    1074.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.05;MQ0=5;QD=21.92;SNPEFF_AMINO_ACID_CHANGE=L212;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1107,105,0
14    70925257    rs12436346    A    G    1235.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.42;MQ0=8;QD=26.29;SNPEFF_AMINO_ACID_CHANGE=L347;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1269,114,0
14    70925501    rs72735760    G    C    1373.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.26;MQ0=2;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=E429Q;SNPEFF_CODON_CHANGE=Gaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:1,41:42:99:1406,108,0
14    70925818    rs2022624    T    C    368.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.89;MQ0=5;QD=19.38;SNPEFF_AMINO_ACID_CHANGE=N534;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    1/1:0,19:19:36.10:401,36,0
14    70925863    rs45466397    A    C    418.45    MQFilter40    AB=0.226;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.351;DB;DP=31;Dels=0.0;FS=9.574;HRun=1;HaplotypeScore=0.8667;MQ=22.78;MQ0=13;MQRankSum=1.897;QD=13.5;ReadPosRankSum=-1.194;SNPEFF_AMINO_ACID_CHANGE=T549;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_70924217_70926622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267499    GT:AD:DP:GQ:PL    0/1:7,24:31:5.23:448,0,5
14    71050792    rs56322329    T    C    424.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430055    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:458,36,0
14    71050892    rs11158867    A    G    1101.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440435    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1134,81,0
14    71057900    rs55831916    T    C    1822.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.706;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.962;QD=33.75;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553611    GT:AD:DP:GQ:PL    1/1:1,53:54:99:1856,100,0
14    71059826    rs2233136    T    C    319.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553523    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:352,27,0
14    71064314    rs1007402    C    T    1399.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256379    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1432,105,0
14    71064577    rs7154970    T    G    538.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256379    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:572,42,0
14    71067155    rs111681910    A    AG    216.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=11.4552;IndelType=I;MQ=61.78;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256379    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:259,18,0
14    71109153    rs4902834    C    G    57.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=19.24;SNPEFF_AMINO_ACID_CHANGE=P103A;SNPEFF_CODON_CHANGE=Ccg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_71108504_71109252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256367    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:90,9,0
14    71109276    rs3742852    G    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256367    GT:AD:DP:GQ:PL    1/1:0,2:4:6.02:81,6,0
14    71202650    rs4141095    C    T    785.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005198    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:819,63,0
14    71208996    rs4899368    A    G    1729.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=31.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005198    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1763,135,0
14    71209025    rs4902843    C    A    845.46    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.967;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;MQRankSum=0.024;QD=11.74;ReadPosRankSum=-0.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005198    GT:AD:DP:GQ:PL    0/1:42,30:72:99:875,0,1205
14    71215380    rs2332457    T    G    59.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=11.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554024    GT:AD:DP:GQ:PL    0/1:2,3:5:62.07:90,0,62
14    71215729    rs10129495    G    A    634.29    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.924;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-0.157;QD=11.53;ReadPosRankSum=0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554024    GT:AD:DP:GQ:PL    0/1:32,23:55:99:664,0,1058
14    71216863    rs10630067    C    CAT    619.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=23.9546;IndelType=I;MQ=60.98;MQ0=0;QD=56.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005198    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:662,33,0
14    71227913    rs3814872    A    C    505.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005198    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:539,45,0
14    71228000    rs11621281    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005198    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    71267345    rs4902857    C    T    902.26    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.567;DB;DP=57;Dels=0.0;FS=6.889;HRun=1;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=1.317;QD=15.83;ReadPosRankSum=-1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005198    GT:AD:DP:GQ:PL    0/1:28,29:57:99:932,0,860
14    71374702    rs2526882    G    A    130.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.922;QD=16.3;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=L45;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_71374122_71374720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:2,6:8:53.02:160,0,53
14    71444338    rs34646737    G    A    815.07    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=64;Dels=0.0;FS=1.02;HRun=1;HaplotypeScore=2.694;MQ=59.71;MQ0=0;MQRankSum=1.128;QD=12.74;ReadPosRankSum=0.04;SNPEFF_AMINO_ACID_CHANGE=G428;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_71443659_71445365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:33,31:64:99:845,0,1065
14    71444788    rs3814871    G    A    1819.94    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.164;DB;DP=106;Dels=0.0;FS=1.699;HRun=0;HaplotypeScore=1.57;MQ=59.17;MQ0=0;MQRankSum=-0.372;QD=17.17;ReadPosRankSum=0.097;SNPEFF_AMINO_ACID_CHANGE=R578;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_71443659_71445365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:42,62:106:99:1850,0,1358
14    71445413    rs4391999    A    G    419.92    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.391;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.172;QD=14.48;ReadPosRankSum=0.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553272    GT:AD:DP:GQ:PL    0/1:14,15:29:99:450,0,460
14    71455540    rs3829954    A    G    913.61    PASS    AB=0.289;AC=1;AF=0.50;AN=2;BaseQRankSum=2.157;DB;DP=38;Dels=0.0;FS=5.384;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.772;QD=24.04;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:11,27:38:99:944,0,315
14    71485578    rs1859915    T    C    160.91    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.736;QD=26.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:1,5:6:21.25:191,0,21
14    71485692    rs1859914    A    T    1387.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1420,105,0
14    71495288    rs34488204    C    T    102.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.71;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554707    GT:AD:DP:GQ:PL    0/1:3,4:7:99:133,0,108
14    71500626    rs34175551    G    GT    128.13    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.37;DB;DP=35;FS=0.0;HRun=9;HaplotypeScore=87.7206;IndelType=I;MQ=59.34;MQ0=0;MQRankSum=-0.293;QD=3.66;ReadPosRankSum=1.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:28,7:35:99:167,0,503
14    71513930    rs3217014    TG    T    135.67    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=32.2363;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=-0.717;QD=12.33;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:6,5:11:99:175,0,255
14    71522001    rs7143595    A    T    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
14    71568683    rs34093157    T    A    97.38    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.342;DB;DP=17;Dels=0.0;FS=3.854;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=5.73;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:10,7:17:99:127,0,360
14    71575201    rs7155247    G    A    33.82    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=4.23;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PCNX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238570    GT:AD:DP:GQ:PL    0/1:6,2:8:63.81:64,0,169
14    72055468    rs1859643    A    C    777.33    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.038;DB;DP=48;Dels=0.0;FS=1.145;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.9;QD=16.19;ReadPosRankSum=-0.176;SNPEFF_AMINO_ACID_CHANGE=S293;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_72054288_72056087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIPA1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358550    GT:AD:DP:GQ:PL    0/1:22,26:48:99:807,0,704
14    72090505    rs3784062    T    G    30.59    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=7.65;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIPA1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358550    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:61,0,33
14    72117156    rs8017465    T    C    1399.18    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.345;DB;DP=104;Dels=0.0;FS=0.837;HRun=1;HaplotypeScore=1.6208;MQ=59.38;MQ0=0;MQRankSum=2.155;QD=13.45;ReadPosRankSum=1.332;SNPEFF_AMINO_ACID_CHANGE=F116;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_72117052_72117226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIPA1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537413    GT:AD:DP:GQ:PL    0/1:51,53:104:99:1429,0,1644
14    72936954    rs8012037    T    C    31.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=10.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343854    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:61,0,33
14    72939495    rs10131300    C    A    823.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.045;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.502;QD=15.24;ReadPosRankSum=1.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343854    GT:AD:DP:GQ:PL    0/1:27,27:54:99:853,0,964
14    72944943    rs2239277    T    G    58.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=5.88;ReadPosRankSum=1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553690    GT:AD:DP:GQ:PL    0/1:6,4:10:88.75:89,0,214
14    72977199    rs12147474    G    A    40.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343854    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:71,0,32
14    72984879    rs2189810    A    G    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553519    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
14    73006579    rs757652    A    G    143.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=28.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RGS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355512    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
14    73079291    rs75889177    G    GAA    2402.29    PASS    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.066;DB;DP=103;FS=0.978;HRun=3;HaplotypeScore=310.0258;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=-0.502;QD=23.32;ReadPosRankSum=-0.847;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_14_73075742_73079333;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000540281    GT:AD:DP:GQ:PL    0/1:52,51:103:99:2441,0,1625
14    73079464    rs2803956    A    G    131.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540281    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
14    73138189    rs1060570    C    A    2926.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=58.98;MQ0=0;QD=33.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554594    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2959,226,0
14    73190201    rs10151620    C    G    696.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553608    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:730,54,0
14    73198336    rs12882805    G    A    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.16;MQ0=0;MQRankSum=1.231;QD=7.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398816    GT:AD:DP:GQ:PL    0/1:3,2:5:66.25:66,0,93
14    73198506    rs6574094    T    C    623.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398816    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:656,51,0
14    73220153    rs3742835    C    T    201.14    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.935;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=11.83;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398816    GT:AD:DP:GQ:PL    0/1:9,8:17:99:231,0,204
14    73360819    rs5809598    T    TTGTC    10073.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=152;FS=0.0;HRun=0;HaplotypeScore=496.5425;IndelType=I;MQ=55.95;MQ0=1;QD=65.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366353    GT:AD:DP:GQ:PL    1/1:18,130:152:99:10074,394,0
14    73360949    rs2215901    A    G    658.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366353    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:692,54,0
14    73404795    rs2302587    G    A    1587.78    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.006;DB;DP=138;Dels=0.0;FS=5.598;HRun=0;HaplotypeScore=1.9995;MQ=59.67;MQ0=0;MQRankSum=-0.416;QD=11.51;ReadPosRankSum=-1.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353777    GT:AD:DP:GQ:PL    0/1:71,66:138:99:1618,0,2305
14    73408355    rs3742832    G    A    1313.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.32;MQ0=0;QD=38.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510612    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1346,102,0
14    73408369    rs3832967    A    AT    885.28    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.198;DB;DP=47;FS=0.0;HRun=1;HaplotypeScore=232.7701;IndelType=I;MQ=60.23;MQ0=0;MQRankSum=0.055;QD=18.84;ReadPosRankSum=0.759;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510612    GT:AD:DP:GQ:PL    0/1:23,24:47:99:924,0,710
14    73409613    rs2333012    G    A    68.68    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=6.87;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505361    GT:AD:DP:GQ:PL    0/1:7,3:10:98.67:99,0,188
14    73412739    rs2246976    C    T    1381.31    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=6.13;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.863;QD=13.95;ReadPosRankSum=-0.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505361    GT:AD:DP:GQ:PL    0/1:53,46:99:99:1411,0,1424
14    73413965    rs2243443    G    C    51.27    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.909;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.202;QD=3.66;ReadPosRankSum=-1.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513337    GT:AD:DP:GQ:PL    0/1:10,4:14:81.26:81,0,360
14    73418732    rs11299441    GT    G    84.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=10;FS=0.0;HRun=8;HaplotypeScore=28.2713;IndelType=D;MQ=61.07;MQ0=0;MQRankSum=-0.198;QD=8.44;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353777    GT:AD:DP:GQ:PL    0/1:5,5:10:51.46:123,0,51
14    73420642    rs2535910    G    A    44.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=14.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353777    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:74,0,24
14    73421966    rs2535909    C    G    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353777    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
14    73422350    rs2806034    T    G    2139    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.409;DB;DP=142;Dels=0.0;FS=1.348;HRun=1;HaplotypeScore=0.9789;MQ=59.38;MQ0=0;MQRankSum=-1.426;QD=15.06;ReadPosRankSum=0.027;SNPEFF_AMINO_ACID_CHANGE=S205;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73422231_73422404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353777    GT:AD:DP:GQ:PL    0/1:68,74:142:99:2169,0,2003
14    73425462    rs12882409    G    A    599.27    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=58.99;MQ0=0;MQRankSum=0.813;QD=13.03;ReadPosRankSum=1.355;SNPEFF_AMINO_ACID_CHANGE=P309;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73425320_73426300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353777    GT:AD:DP:GQ:PL    0/1:21,25:46:99:629,0,501
14    73440864    rs12931    C    T    1254.90    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.234;DB;DP=68;Dels=0.0;FS=0.946;HRun=0;HaplotypeScore=2.6793;MQ=59.66;MQ0=0;MQRankSum=0.789;QD=18.45;ReadPosRankSum=1.107;SNPEFF_AMINO_ACID_CHANGE=T260;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73440788_73440901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394207    GT:AD:DP:GQ:PL    0/1:25,43:68:99:1285,0,686
14    73459917    rs2333016    C    T    1174.30    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.32;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.998;MQ=59.48;MQ0=0;MQRankSum=0.501;QD=14.68;ReadPosRankSum=0.963;SNPEFF_AMINO_ACID_CHANGE=E379;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73459851_73460065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318876    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1204,0,1189
14    73465003    rs997667    A    G    595.57    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=1.263;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=54.58;MQ0=0;MQRankSum=2.446;QD=10.09;ReadPosRankSum=1.604;SNPEFF_AMINO_ACID_CHANGE=F168;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73464519_73465023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318876    GT:AD:DP:GQ:PL    0/1:35,23:59:99:626,0,807
14    73465027    rs5809599    C    CAA    801.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.0;HRun=15;HaplotypeScore=368.4063;IndelType=I;MQ=53.16;MQ0=0;QD=17.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318876    GT:AD:DP:GQ:PL    1/1:11,17:45:96.80:844,97,0
14    73572825    rs362429    G    A    2131.75    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=123;Dels=0.0;FS=4.86;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.186;QD=17.33;ReadPosRankSum=0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525321    GT:AD:DP:GQ:PL    0/1:55,68:123:99:2162,0,1745
14    73581074    rs2158581    T    C    1761.80    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.877;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=16.78;ReadPosRankSum=0.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530978    GT:AD:DP:GQ:PL    0/1:40,65:105:99:1792,0,1113
14    73664853    rs165932    G    T    323.72    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.61;QD=17.04;ReadPosRankSum=-2.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261970    GT:AD:DP:GQ:PL    0/1:8,11:19:99:354,0,246
14    73712922    rs12895249    T    C    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
14    73716633    rs2293793    T    C    176.97    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=16;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.15;QD=11.06;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    0/1:7,9:16:99:207,0,243
14    73716774    rs177393    G    A    123.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=10.32;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=T139;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73716692_73716822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    0/1:6,5:12:99:154,0,187
14    73717452    rs17182237    T    C    30.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    0/1:3,2:5:60.62:61,0,92
14    73717720    rs741842    G    A    548.62    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=48;Dels=0.0;FS=2.555;HRun=0;HaplotypeScore=2.0321;MQ=59.03;MQ0=0;MQRankSum=-0.565;QD=11.43;ReadPosRankSum=-0.764;SNPEFF_AMINO_ACID_CHANGE=A191T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73717615_73717738;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    0/1:27,21:48:99:579,0,709
14    73719334    rs2242611    G    A    441.86    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.312;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.287;QD=17.67;ReadPosRankSum=-0.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394134    GT:AD:DP:GQ:PL    0/1:11,14:25:99:472,0,291
14    73719984    rs2242613    C    T    108.86    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.1;ReadPosRankSum=1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394134    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,138
14    73720214    rs2079319    G    C    77.10    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394134    GT:AD:DP:GQ:PL    0/1:1,5:6:25.76:107,0,26
14    73720873    rs177392    C    T    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394134    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
14    73721162    rs2293796    G    A    793.26    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=2.477;DB;DP=41;Dels=0.0;FS=12.485;HRun=2;HaplotypeScore=0.8941;MQ=59.44;MQ0=0;MQRankSum=1.286;QD=19.35;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394134    GT:AD:DP:GQ:PL    0/1:15,26:41:99:823,0,362
14    73721775    rs11628713    C    T    64.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.83;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394134    GT:AD:DP:GQ:PL    0/1:2,3:5:66.73:94,0,67
14    73727509    rs177389    T    G    278.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_AMINO_ACID_CHANGE=M666R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73727417_73727537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:311,24,0
14    73728957    rs177387    G    A    1162.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    1/1:0,34:34:93.24:1195,93,0
14    73730290    rs177385    C    A    1937.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3471;MQ=58.88;MQ0=0;MQRankSum=-0.617;QD=31.25;ReadPosRankSum=-1.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1970,147,0
14    73732302    rs177383    C    G    550.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554314    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:584,45,0
14    73735366    rs4903104    C    T    330.70    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=3.27;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=0.259;QD=12.72;ReadPosRankSum=1.661;SNPEFF_AMINO_ACID_CHANGE=T1174M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73735265_73735431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPLN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340738    GT:AD:DP:GQ:PL    0/1:15,11:26:99:361,0,416
14    73739050    rs3087637    C    A    183.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.0;QD=15.32;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326018    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,202
14    73743458    rs17781919    C    T    310.95    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.936;DB;DP=21;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.599;QD=14.81;ReadPosRankSum=0.81;SNPEFF_AMINO_ACID_CHANGE=G389D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73743257_73744001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUMB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000554521    GT:AD:DP:GQ:PL    0/1:10,11:21:99:341,0,321
14    73746312    rs177380    C    G    83.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553997    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
14    73822611    rs17127085    C    T    169.63    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=15.42;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326018    GT:AD:DP:GQ:PL    0/1:5,6:11:99:200,0,177
14    73957682    rs10144461    C    G    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    73957772    rs10144469    A    G    463.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:0,18:18:42.12:497,42,0
14    73957981    rs71959639    G    GC    505.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=29.0269;IndelType=I;MQ=60.83;MQ0=0;QD=38.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:0,11:13:38.87:547,39,0
14    73958812    rs3813563    T    C    1861.15    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=3.985;DB;DP=121;Dels=0.0;FS=2.392;HRun=3;HaplotypeScore=1.9454;MQ=59.81;MQ0=0;MQRankSum=-0.81;QD=15.38;ReadPosRankSum=0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    0/1:52,69:121:99:1891,0,1391
14    73959703    rs34302440    C    CT    285.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.364;DB;DP=51;FS=0.0;HRun=16;HaplotypeScore=541.5999;IndelType=I;MQ=48.08;MQ0=0;MQRankSum=-1.036;QD=5.6;ReadPosRankSum=0.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:25,14:51:0.36:323,0,0
14    73961765    rs11365617    CA    C    216.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=83.5646;IndelType=D;MQ=64.19;MQ0=0;QD=21.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:0,10:10:29.99:259,30,0
14    73961821    rs4519287    T    C    407.34    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=61.58;MQ0=0;MQRankSum=1.092;QD=15.09;ReadPosRankSum=-0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    0/1:14,13:27:99:437,0,477
14    73961841    rs1019056    T    C    1833.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.9;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1866,135,0
14    73963383    rs8014577    T    C    1321.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=K802;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_73963305_73963383;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1354,99,0
14    73969368    rs61987096    C    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
14    73973364    rs35842680    A    G    251.50    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=16.77;ReadPosRankSum=0.772;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    0/1:7,8:15:99:281,0,237
14    73975179    rs4903117    A    G    173.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
14    73989859    rs1074501    C    T    339.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_73988976_73989928;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334988    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:373,27,0
14    74004595    rs72738342    C    T    38.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311148    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
14    74008071    rs66713913    G    A    411.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311148    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:444,33,0
14    74036216    rs56069624    A    G    186.37    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=20;Dels=0.0;FS=3.757;HRun=2;HaplotypeScore=0.0;MQ=48.61;MQ0=0;MQRankSum=-0.38;QD=9.32;ReadPosRankSum=0.456;SNPEFF_AMINO_ACID_CHANGE=E91G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74035763_74036587;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238651    GT:AD:DP:GQ:PL    0/1:11,9:20:99:216,0,346
14    74041475    rs145438128    T    C    155.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.68;MQ0=0;MQRankSum=0.53;QD=10.34;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238651    GT:AD:DP:GQ:PL    0/1:9,6:15:99:185,0,318
14    74041748    rs149033118    A    G    576.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=28.81;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=H131R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74041612_74042357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538782    GT:AD:DP:GQ:PL    1/1:0,19:20:57.11:610,57,0
14    74042189    rs7494    A    G    326.22    MQFilter40;QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.291;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.81;MQ0=92;MQRankSum=-0.167;QD=1.95;ReadPosRankSum=-0.093;SNPEFF_AMINO_ACID_CHANGE=H278R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74041612_74042357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538782    GT:AD:DP:GQ:PL    0/1:126,41:167:99:356,0,1745
14    74060487    rs45522539    G    C    1528.89    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.134;DB;DP=92;Dels=0.0;FS=17.541;HRun=2;HaplotypeScore=0.9734;MQ=59.75;MQ0=0;MQRankSum=-1.541;QD=16.62;ReadPosRankSum=0.356;SNPEFF_AMINO_ACID_CHANGE=G180A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74060406_74060608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326303    GT:AD:DP:GQ:PL    0/1:39,53:92:99:1559,0,1177
14    74061968    rs2010070    T    C    2406.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=I292;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74061753_74063200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326303    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2440,190,0
14    74083846    rs12891009    C    T    1353.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.708;DB;DP=119;Dels=0.0;FS=0.704;HRun=0;HaplotypeScore=1.5115;MQ=59.84;MQ0=0;MQRankSum=-1.507;QD=11.37;ReadPosRankSum=-1.606;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_74083548_74083896;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381139    GT:AD:DP:GQ:PL    0/1:68,51:119:99:1383,0,2077
14    74086623    rs67656337    C    CT    91.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=13;FS=0.0;HRun=15;HaplotypeScore=91.2033;IndelType=I;MQ=52.45;MQ0=0;MQRankSum=-0.747;QD=7.03;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381139    GT:AD:DP:GQ:PL    1/1:5,6:13:5.64:132,6,0
14    74086735    rs10047916    A    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381139    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
14    74327100    rs62005578    G    T    142.32    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=17.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267568    GT:AD:DP:GQ:PL    0/1:3,5:8:99:172,0,100
14    74340555    rs2336564    A    G    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267568    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
14    74340797    rs11159042    A    T    493.27    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=48;Dels=0.0;FS=6.36;HRun=0;HaplotypeScore=0.9789;MQ=59.52;MQ0=0;MQRankSum=0.032;QD=10.28;ReadPosRankSum=-1.53;SNPEFF_AMINO_ACID_CHANGE=G52;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74340726_74340846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554885    GT:AD:DP:GQ:PL    0/1:26,21:48:99:523,0,811
14    74349227    rs8005140    G    A    461.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=14.41;ReadPosRankSum=-0.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267568    GT:AD:DP:GQ:PL    0/1:16,16:32:99:491,0,532
14    74349313    rs8005014    C    T    135.45    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.532;QD=12.31;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267568    GT:AD:DP:GQ:PL    0/1:6,5:11:99:165,0,212
14    74358703    rs140665239    CCT    C    141.80    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=24.5199;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=-0.198;QD=20.26;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF410;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324593    GT:AD:DP:GQ:PL    0/1:2,5:7:82.52:181,0,83
14    74375956    rs2302136    A    C    707.33    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=4.455;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8658;MQ=60.0;MQ0=0;MQRankSum=0.595;QD=15.38;ReadPosRankSum=-0.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF410;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555602    GT:AD:DP:GQ:PL    0/1:25,21:46:99:737,0,862
14    74387450    rs2302120    A    T    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF410;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324593    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
14    74388908    rs1127392    T    C    168.90    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.409;DB;DP=19;Dels=0.0;FS=5.18;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=8.89;ReadPosRankSum=-0.531;SNPEFF_AMINO_ACID_CHANGE=D350;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74388769_74388909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF410;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540593    GT:AD:DP:GQ:PL    0/1:10,9:19:99:199,0,328
14    74401030    rs45609933    G    A    646.15    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.304;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=58.55;MQ0=0;MQRankSum=0.56;QD=12.43;ReadPosRankSum=-0.431;SNPEFF_AMINO_ACID_CHANGE=P625S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74400705_74401097;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM161B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534936    GT:AD:DP:GQ:PL    0/1:28,24:52:99:676,0,854
14    74404756    rs28927675    T    C    1835.28    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.178;DB;DP=122;Dels=0.0;FS=1.486;HRun=0;HaplotypeScore=1.3302;MQ=59.81;MQ0=0;MQRankSum=1.385;QD=15.04;ReadPosRankSum=-0.196;SNPEFF_AMINO_ACID_CHANGE=K487R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74404651_74404815;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM161B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534936    GT:AD:DP:GQ:PL    0/1:53,69:122:99:1865,0,1564
14    74409032    rs740506    G    A    244    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=12.84;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM161B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286544    GT:AD:DP:GQ:PL    0/1:10,9:19:99:274,0,320
14    74413129    rs7146634    C    G    1345.11    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=133;Dels=0.0;FS=1.473;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.442;QD=10.11;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=G141;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74412989_74413308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM161B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286544    GT:AD:DP:GQ:PL    0/1:79,54:133:99:1375,0,2354
14    74413420    rs7148485    T    C    143.12    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=17.89;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM161B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286544    GT:AD:DP:GQ:PL    0/1:3,5:8:99:173,0,103
14    74416600    rs11621743    T    C    140.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=10.8;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM161B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286544    GT:AD:DP:GQ:PL    0/1:7,6:13:99:170,0,241
14    74422329    rs2302118    G    C    287.35    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=26;Dels=0.0;FS=9.558;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=11.05;ReadPosRankSum=-0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554217    GT:AD:DP:GQ:PL    0/1:15,11:26:99:317,0,532
14    74424938    rs3180946    T    C    1111.43    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.938;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.642;QD=15.02;ReadPosRankSum=-0.056;SNPEFF_AMINO_ACID_CHANGE=H115;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74424850_74424980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238709    GT:AD:DP:GQ:PL    0/1:36,38:74:99:1141,0,1108
14    74425056    rs3764859    C    A    338.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=18.79;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=R155;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74424850_74425548;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553462    GT:AD:DP:GQ:PL    0/1:8,10:18:99:368,0,240
14    74428286    rs7141392    A    G    2971.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545052    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3004,220,0
14    74428445    rs8500    G    A    1561.49    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=4.205;DB;DP=111;Dels=0.0;FS=0.807;HRun=0;HaplotypeScore=2.722;MQ=59.79;MQ0=0;MQRankSum=0.866;QD=14.07;ReadPosRankSum=1.209;SNPEFF_AMINO_ACID_CHANGE=V331M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74428440_74428606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238709    GT:AD:DP:GQ:PL    0/1:59,52:111:99:1591,0,1743
14    74433552    rs13743    A    T    401.10    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.308;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=14.86;ReadPosRankSum=0.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238709    GT:AD:DP:GQ:PL    0/1:14,13:27:99:431,0,383
14    74433859    rs3742813    T    C    34.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=8.51;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COQ6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238709    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:64,0,31
14    74436502    rs2336742    G    A    39.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334696    GT:AD:DP:GQ:PL    0/1:2,2:4:48.91:69,0,49
14    74439495    rs11623794    G    A    594.86    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=3.582;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=16.08;ReadPosRankSum=1.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553284    GT:AD:DP:GQ:PL    0/1:17,20:37:99:625,0,436
14    74441537    rs2074933    T    C    1078.51    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=4.043;DB;DP=78;Dels=0.0;FS=4.538;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.086;QD=13.83;ReadPosRankSum=1.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553284    GT:AD:DP:GQ:PL    0/1:37,40:78:99:1109,0,1193
14    74441684    rs2074932    G    A    1007.11    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.869;DB;DP=81;Dels=0.0;FS=2.241;HRun=1;HaplotypeScore=0.0;MQ=58.85;MQ0=0;MQRankSum=0.866;QD=12.43;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=L243;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74441627_74441688;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334696    GT:AD:DP:GQ:PL    0/1:43,38:81:99:1037,0,1457
14    74449664    rs12431489    A    G    641.12    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=1.181;DB;DP=58;Dels=0.0;FS=4.71;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.469;QD=11.05;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556242    GT:AD:DP:GQ:PL    0/1:37,21:58:99:671,0,1168
14    74453706    rs71395617    AT    A    207.02    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.416;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=63.833;IndelType=D;MQ=57.16;MQ0=0;MQRankSum=1.002;QD=13.8;ReadPosRankSum=-0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554664    GT:AD:DP:GQ:PL    0/1:9,6:15:99:246,0,245
14    74454813    rs2302117    C    A    207.84    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.71;MQ0=0;MQRankSum=0.049;QD=11.55;ReadPosRankSum=-0.244;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_14_74454589_74454875;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334696    GT:AD:DP:GQ:PL    0/1:10,8:18:99:238,0,280
14    74454819    rs12434581    T    A    247.72    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.71;MQ0=0;MQRankSum=0.342;QD=13.76;ReadPosRankSum=0.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554664    GT:AD:DP:GQ:PL    0/1:8,10:18:99:278,0,237
14    74489735    rs3784039    G    A    1012.47    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=3.414;DB;DP=62;Dels=0.0;FS=0.975;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=16.33;ReadPosRankSum=-1.453;SNPEFF_AMINO_ACID_CHANGE=R58Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74489619_74489847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394009    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1042,0,820
14    74512698    rs6574158    T    C    603.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.284;QD=15.09;ReadPosRankSum=-0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394009    GT:AD:DP:GQ:PL    0/1:20,20:40:99:634,0,633
14    74514674    rs3784038    A    T    2215.73    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.053;DB;DP=134;Dels=0.0;FS=3.193;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=16.54;ReadPosRankSum=1.058;SNPEFF_AMINO_ACID_CHANGE=D230V;SNPEFF_CODON_CHANGE=gAt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74514633_74514777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394009    GT:AD:DP:GQ:PL    0/1:59,75:134:99:2246,0,1832
14    74527203    rs8017248    G    A    163.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492247    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
14    74537885    rs2072293    T    G    1022.68    PASS    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=99;Dels=0.0;FS=1.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.046;QD=10.33;ReadPosRankSum=1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553814    GT:AD:DP:GQ:PL    0/1:62,37:99:99:1053,0,1844
14    74538308    rs4243645    T    C    139.10    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=11.59;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556852    GT:AD:DP:GQ:PL    0/1:5,7:12:99:169,0,176
14    74538706    rs4646861    A    G    800.21    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=3.926;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.372;QD=16.67;ReadPosRankSum=-1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350259    GT:AD:DP:GQ:PL    0/1:23,24:48:99:830,0,773
14    74539325    rs78518596    C    A    291.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.888;DB;DP=21;Dels=0.05;FS=4.706;HRun=7;HaplotypeScore=2.9643;MQ=60.0;MQ0=0;MQRankSum=1.03;QD=13.25;ReadPosRankSum=0.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350259    GT:AD:DP:GQ:PL    0/1:9,12:21:99:321,0,273
14    74541898    rs8017319    A    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350259    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    74550908    rs2074939    A    T    54.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=10.83;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553773    GT:AD:DP:GQ:PL    0/1:2,3:5:59.63:84,0,60
14    74551249    rs1984511    T    C    70.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553773    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
14    74567736    rs2300193    T    C    431.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.456;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.083;QD=14.39;ReadPosRankSum=-0.995;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554289    GT:AD:DP:GQ:PL    0/1:15,15:30:99:462,0,507
14    74568089    rs74431323    A    G    117.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.64;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554289    GT:AD:DP:GQ:PL    0/1:2,4:6:47.88:148,0,48
14    74665543    rs10145171    G    A    297.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.371;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7044;MQ=59.03;MQ0=0;MQRankSum=-0.849;QD=12.38;ReadPosRankSum=-1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381098    GT:AD:DP:GQ:PL    0/1:14,10:24:99:327,0,514
14    74708144    rs11621203    G    C    33.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261980    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
14    74711883    rs35435463    C    T    474.09    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.046;DB;DP=37;Dels=0.0;FS=1.356;HRun=1;HaplotypeScore=0.9997;MQ=58.35;MQ0=0;MQRankSum=0.063;QD=12.81;ReadPosRankSum=0.475;SNPEFF_AMINO_ACID_CHANGE=S157;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74711868_74711991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261980    GT:AD:DP:GQ:PL    0/1:20,17:37:99:504,0,542
14    74726515    rs11383441    G    GC    576.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=3;HaplotypeScore=37.4674;IndelType=I;MQ=59.84;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261980    GT:AD:DP:GQ:PL    1/1:1,16:17:45.15:619,45,0
14    74753278    rs929449    T    C    2957.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466822    GT:AD:DP:GQ:PL    1/1:0,97:97:99:2991,247,0
14    74759006    rs3742801    C    T    1162.47    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.412;DB;DP=72;Dels=0.0;FS=0.908;HRun=1;HaplotypeScore=1.8136;MQ=59.68;MQ0=0;MQRankSum=-0.353;QD=16.15;ReadPosRankSum=-0.577;SNPEFF_AMINO_ACID_CHANGE=E264K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74758990_74759079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298816    GT:AD:DP:GQ:PL    0/1:33,39:72:99:1192,0,863
14    74759301    rs4148078    G    T    409.55    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.627;DB;DP=22;Dels=0.0;FS=7.908;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.037;QD=18.62;ReadPosRankSum=-0.479;SNPEFF_AMINO_ACID_CHANGE=L223;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74759254_74759345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298816    GT:AD:DP:GQ:PL    0/1:6,16:22:99:440,0,187
14    74759477    rs4148077    C    T    553.60    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.416;DB;DP=29;Dels=0.0;FS=4.386;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=2.0;QD=19.09;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=A200T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74759451_74759572;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298816    GT:AD:DP:GQ:PL    0/1:11,18:29:99:584,0,320
14    74762798    rs2074945    C    T    54.89    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.86;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477803    GT:AD:DP:GQ:PL    0/1:5,3:8:84.88:85,0,186
14    74766080    rs2301346    T    C    168.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=16.86;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489207    GT:AD:DP:GQ:PL    0/1:4,6:10:99:199,0,128
14    74766352    rs2301345    A    G    221.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-1.196;QD=11.06;ReadPosRankSum=-0.116;SNPEFF_AMINO_ACID_CHANGE=L62;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74766251_74766378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356924    GT:AD:DP:GQ:PL    0/1:12,8:20:99:251,0,446
14    74767128    rs7158118    G    A    119.46    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.07;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298816    GT:AD:DP:GQ:PL    0/1:2,5:7:66.35:149,0,66
14    74876355    rs61734850    G    C    586.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=S31R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74876031_74876504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNDIG1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331628    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:619,45,0
14    74950964    rs10148268    T    C    499.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.83;MQ0=0;QD=38.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555592    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:533,39,0
14    74951000    rs112636832    T    TCTG    820.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=62.3604;IndelType=I;MQ=52.38;MQ0=0;QD=63.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555592    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:863,39,0
14    74971374    rs11159087    C    T    325.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
14    74972942    rs2286411    G    A    778.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.11;MQ0=0;QD=29.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,26:26:69.19:811,69,0
14    74973579    rs45537036    T    C    279.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.47;MQ0=0;MQRankSum=0.639;QD=13.97;ReadPosRankSum=0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:1,19:20:30.07:312,30,0
14    74973581    rs60130392    T    C    279.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.64;MQ0=0;QD=16.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,17:17:30.06:312,30,0
14    74973583    .    C    CGT    675.12    PASS    AC=2;AF=1.00;AN=2;DP=15;FS=0.0;HRun=0;HaplotypeScore=132.1264;IndelType=I;MQ=53.88;MQ0=0;QD=45.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:2,13:15:40.95:717,41,0
14    74976986    rs7160756    A    G    294.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
14    74991855    rs862031    A    G    1248.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=T834;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74991827_74991928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1282,99,0
14    74991959    rs862030    T    C    422.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556359    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:455,39,0
14    74992800    rs699374    A    G    263.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_AMINO_ACID_CHANGE=T62;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_74992782_74992817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556359    GT:AD:DP:GQ:PL    1/1:0,11:11:21.07:297,21,0
14    74992861    rs699375    A    C    255.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:289,21,0
14    74999108    rs862025    C    T    1002.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557425    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1035,78,0
14    75002607    rs3742794    G    T    711.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557425    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:745,54,0
14    75016482    rs2196861    T    C    1109.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1143,87,0
14    75017650    rs934999    G    C    167.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
14    75018086    rs55971017    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
14    75019157    rs11622992    T    C    105.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:138,12,0
14    75070493    rs3742793    G    C    404.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261978    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:437,33,0
14    75130235    rs1045430    T    G    166.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0317;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556202    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
14    75137664    rs2302832    T    C    196.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0317;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553279    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
14    75143600    rs8017229    T    C    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0317;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356357    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
14    75151047    rs9671386    G    A    225.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0317;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356357    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:259,21,0
14    75182937    rs2287400    G    A    325.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341162    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:359,27,0
14    75200697    rs3825708    G    A    458.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554064    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:492,36,0
14    75230953    rs45599947    C    T    911.70    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=1.865;DB;DP=100;Dels=0.0;FS=2.75;HRun=1;HaplotypeScore=1.6006;MQ=59.07;MQ0=0;MQRankSum=0.771;QD=9.12;ReadPosRankSum=0.151;SNPEFF_AMINO_ACID_CHANGE=P254L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75230069_75231065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YLPM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238571    GT:AD:DP:GQ:PL    0/1:57,43:100:99:942,0,1741
14    75245002    rs2359237    G    A    823.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YLPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238571    GT:AD:DP:GQ:PL    1/1:0,22:22:66.19:857,66,0
14    75276079    rs957345    C    G    2685.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.43;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YLPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238571    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2719,205,0
14    75278181    rs12896360    A    C    329.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=23.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YLPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238571    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:363,30,0
14    75278211    rs12588415    G    A    751.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YLPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238571    GT:AD:DP:GQ:PL    1/1:0,26:26:63.17:784,63,0
14    75278302    rs8022046    G    A    2529.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YLPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238571    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2563,190,0
14    75279395    rs2302834    T    A    3161.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=P1098;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75279331_75279485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YLPM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552421    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3195,247,0
14    75282873    rs67970830    AT    A    244.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=15;HaplotypeScore=169.5354;IndelType=D;MQ=55.74;MQ0=0;QD=8.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YLPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238571    GT:AD:DP:GQ:PL    1/1:4,21:28:47.17:286,47,0
14    75373626    rs78810423    C    CTGAT    1895.29    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.738;DB;DP=54;FS=6.673;HRun=0;HaplotypeScore=212.083;IndelType=I;MQ=55.09;MQ0=0;MQRankSum=-0.651;QD=35.1;ReadPosRankSum=-1.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DLST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238671    GT:AD:DP:GQ:PL    0/1:32,21:54:99:1934,0,1121
14    75378331    rs759057    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPS6KL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354625    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
14    75386530    rs60425478    T    TGG    155.49    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=23;FS=6.286;HRun=8;HaplotypeScore=149.4982;IndelType=I;MQ=58.65;MQ0=0;MQRankSum=0.648;QD=6.76;ReadPosRankSum=-3.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPS6KL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556776    GT:AD:DP:GQ:PL    0/1:14,9:23:99:195,0,257
14    75386576    rs2286913    G    A    152.88    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.358;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3574;MQ=58.7;MQ0=0;MQRankSum=-0.609;QD=6.37;ReadPosRankSum=-1.077;SNPEFF_AMINO_ACID_CHANGE=P121L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75386548_75386672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPS6KL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354625    GT:AD:DP:GQ:PL    0/1:15,8:23:99:183,0,304
14    75388183    rs7156590    C    T    712    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=4.023;DB;DP=51;Dels=0.0;FS=1.263;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.142;QD=13.96;ReadPosRankSum=0.35;SNPEFF_AMINO_ACID_CHANGE=R21Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75387980_75388264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPS6KL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354625    GT:AD:DP:GQ:PL    0/1:23,28:51:99:742,0,618
14    75412908    rs8005277    A    G    1266.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555077    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1299,111,0
14    75415194    rs2159907    G    C    533.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238607    GT:AD:DP:GQ:PL    1/1:0,22:22:45.14:567,45,0
14    75416000    rs2268614    C    T    393.35    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=38;Dels=0.0;FS=1.32;HRun=1;HaplotypeScore=0.734;MQ=58.78;MQ0=0;MQRankSum=-1.531;QD=10.35;ReadPosRankSum=-0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238607    GT:AD:DP:GQ:PL    0/1:23,15:38:99:423,0,677
14    75469555    rs175040    A    G    248.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=16.58;ReadPosRankSum=-0.933;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266126    GT:AD:DP:GQ:PL    0/1:6,9:15:99:279,0,147
14    75470446    rs175041    C    A    610.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266126    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:643,48,0
14    75483812    rs13712    T    C    870.38    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.821;DB;DP=57;Dels=0.0;FS=7.241;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.759;QD=15.27;ReadPosRankSum=0.152;SNPEFF_AMINO_ACID_CHANGE=Q1267;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75483490_75483904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556257    GT:AD:DP:GQ:PL    0/1:30,27:57:99:900,0,910
14    75484057    rs175050    T    C    65.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=13.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238662    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:97,9,0
14    75485406    rs175052    G    A    552.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544985    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:585,42,0
14    75485489    rs175053    A    G    1623.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544985    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1657,126,0
14    75489438    rs41544017    G    C    734.08    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=59.16;MQ0=0;MQRankSum=-0.973;QD=14.68;ReadPosRankSum=-1.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544985    GT:AD:DP:GQ:PL    0/1:23,27:50:99:764,0,776
14    75489446    rs175056    T    C    1681.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.21;MQ0=0;QD=31.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544985    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1715,132,0
14    75489632    rs175057    C    T    824.45    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.208;DB;DP=61;Dels=0.0;FS=3.615;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.557;QD=13.52;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238662    GT:AD:DP:GQ:PL    0/1:33,28:61:99:854,0,1025
14    75497130    rs175070    C    A    938.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555499    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:972,72,0
14    75505008    rs3742780    G    C    637.31    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.84;MQ0=0;MQRankSum=0.137;QD=15.93;ReadPosRankSum=-0.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555671    GT:AD:DP:GQ:PL    0/1:17,23:40:99:667,0,542
14    75505016    rs175075    A    G    1440.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9652;MQ=58.89;MQ0=0;QD=34.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555671    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1474,111,0
14    75513828    rs175080    G    A    1311.56    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=1.458;DB;DP=76;Dels=0.0;FS=4.848;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.178;QD=17.26;ReadPosRankSum=-0.995;SNPEFF_AMINO_ACID_CHANGE=P844L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75513079_75516421;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238662    GT:AD:DP:GQ:PL    0/1:31,45:76:99:1342,0,1069
14    75513883    rs175081    T    C    2193.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=35.95;SNPEFF_AMINO_ACID_CHANGE=N826D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75513079_75516421;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238662    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2226,166,0
14    75520065    rs7303    T    C    666.34    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.42;MQ0=0;MQRankSum=-0.135;QD=16.66;ReadPosRankSum=-0.758;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238662    GT:AD:DP:GQ:PL    0/1:19,21:40:99:696,0,669
14    75537381    rs11546525    C    T    2151.44    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=2.191;DB;DP=118;Dels=0.0;FS=18.051;HRun=0;HaplotypeScore=2.3893;MQ=60.0;MQ0=0;MQRankSum=-0.562;QD=18.23;ReadPosRankSum=0.93;SNPEFF_AMINO_ACID_CHANGE=Y35;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75537258_75538441;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM164C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238686    GT:AD:DP:GQ:PL    0/1:53,65:118:99:2181,0,1537
14    75551254    rs175487    C    T    7053.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=193;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.37;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556170    GT:AD:DP:GQ:PL    1/1:0,193:193:99:7054,524,0
14    75551442    rs175486    A    C    1029.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556170    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1063,78,0
14    75553655    rs175485    T    C    1311.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238616    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1344,102,0
14    75572559    rs119077    T    C    295.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540227    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
14    75580152    rs175464    G    A    1555.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=36.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554258    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1589,117,0
14    75585493    .    T    C    133.71    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.195;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.518;QD=6.37;ReadPosRankSum=-0.662;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553823    GT:AD:DP:GQ:PL    0/1:15,6:21:99:164,0,556
14    75587351    rs175454    T    C    818.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238616    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:851,63,0
14    75590846    rs175449    A    T    935.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.42;SNPEFF_AMINO_ACID_CHANGE=I100;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75590749_75590926;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238616    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:969,72,0
14    75591071    rs175448    G    A    112.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEK9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238616    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
14    75601782    rs175444    G    C    866.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303575    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:899,69,0
14    75619035    rs175427    C    T    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303575    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
14    75745551    rs2239615    T    A    62.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.53;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556324    GT:AD:DP:GQ:PL    0/1:2,3:5:52.72:93,0,53
14    75745626    rs7101    C    T    222.27    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=22.23;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556324    GT:AD:DP:GQ:PL    0/1:2,8:10:58.20:252,0,58
14    75746690    rs1046117    C    T    655.78    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=3.337;DB;DP=53;Dels=0.0;FS=1.341;HRun=0;HaplotypeScore=4.4022;MQ=58.68;MQ0=0;MQRankSum=-1.738;QD=12.37;ReadPosRankSum=-1.098;SNPEFF_AMINO_ACID_CHANGE=R4C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75746681_75746831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000557139    GT:AD:DP:GQ:PL    0/1:29,24:53:99:686,0,731
14    75747407    rs11354110    AG    A    578.87    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=3.859;DB;DP=46;FS=6.635;HRun=4;HaplotypeScore=116.7538;IndelType=D;MQ=60.24;MQ0=0;MQRankSum=0.507;QD=12.58;ReadPosRankSum=0.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554212    GT:AD:DP:GQ:PL    0/1:25,21:46:99:618,0,887
14    75758770    rs3742770    G    A    616.31    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.081;DB;DP=49;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=1.8928;MQ=60.0;MQ0=0;MQRankSum=0.373;QD=12.58;ReadPosRankSum=-1.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF111167.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238638    GT:AD:DP:GQ:PL    0/1:26,23:49:99:646,0,702
14    75758885    rs3742769    A    G    769.73    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.941;DB;DP=53;Dels=0.0;FS=9.88;HRun=0;HaplotypeScore=0.734;MQ=59.56;MQ0=0;MQRankSum=0.311;QD=14.52;ReadPosRankSum=0.11;SNPEFF_AMINO_ACID_CHANGE=M109T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75758809_75759067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF111167.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238638    GT:AD:DP:GQ:PL    0/1:26,27:53:99:800,0,792
14    75759060    rs3742768    C    T    815.95    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=54;Dels=0.0;FS=1.099;HRun=0;HaplotypeScore=1.7853;MQ=59.65;MQ0=0;MQRankSum=0.312;QD=15.11;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=V51I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75758809_75759067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF111167.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000238638    GT:AD:DP:GQ:PL    0/1:25,29:54:99:846,0,646
14    75904660    rs3625    A    G    342.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_AMINO_ACID_CHANGE=T13A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_75904601_75904824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JDP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419727    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:375,30,0
14    75989286    rs175722    G    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BATF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286639    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    76135620    rs74635465    G    A    179.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.683;QD=19.9;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286650    GT:AD:DP:GQ:PL    0/1:3,6:9:94.46:209,0,94
14    76156609    rs2303345    C    T    763.73    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.335;DB;DP=69;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.637;QD=11.07;ReadPosRankSum=0.88;SNPEFF_AMINO_ACID_CHANGE=A149V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_76156535_76156665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286650    GT:AD:DP:GQ:PL    0/1:39,30:69:99:794,0,1186
14    76173860    rs1005224    T    A    99.10    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=9.01;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286650    GT:AD:DP:GQ:PL    0/1:6,5:11:99:129,0,189
14    76175565    rs1981898    C    A    1285.47    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=59.77;MQ0=0;MQRankSum=0.938;QD=12.6;ReadPosRankSum=1.292;SNPEFF_AMINO_ACID_CHANGE=L262I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_76175522_76176171;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286650    GT:AD:DP:GQ:PL    0/1:55,47:102:99:1315,0,1675
14    76175594    rs1981899    G    A    1151.17    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.443;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8633;MQ=60.0;MQ0=0;MQRankSum=-0.867;QD=12.25;ReadPosRankSum=-0.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    0/1:50,43:94:99:1181,0,1586
14    76175666    rs8007792    C    A    635.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.737;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.424;QD=12.98;ReadPosRankSum=1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    0/1:28,21:49:99:666,0,956
14    76198818    rs34989066    CT    C    85.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=18;FS=3.31;HRun=12;HaplotypeScore=98.1297;IndelType=D;MQ=60.53;MQ0=0;MQRankSum=1.324;QD=4.73;ReadPosRankSum=-2.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    0/1:9,7:18:99:124,0,169
14    76200523    rs17183712    A    G    78.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.16;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    0/1:3,4:7:65.29:108,0,65
14    76201482    rs2288141    G    T    1029.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1062,78,0
14    76223945    rs1477465    A    G    77.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554148    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
14    76223958    rs1477466    T    C    78.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554148    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
14    76224153    rs2113577    T    A    2034.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554148    GT:AD:DP:GQ:PL    1/1:0,58:59:99:2067,150,0
14    76232398    rs2359870    T    C    1185.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1218,87,0
14    76238254    rs113101100    AT    A    198.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.51;DB;DP=27;FS=0.0;HRun=15;HaplotypeScore=147.5629;IndelType=D;MQ=56.01;MQ0=0;MQRankSum=-0.51;QD=7.35;ReadPosRankSum=-1.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:11,14:27:20.99:241,21,0
14    76241559    rs1863035    G    A    132.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
14    76242089    rs1035614    A    T    336.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:370,27,0
14    76242139    rs1035615    T    C    128.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
14    76246172    rs2303346    T    A    216.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
14    76329867    rs10147054    G    C    793.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:827,63,0
14    76330269    .    A    AAAAAAAG    1450.09    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=4.198;DP=40;FS=0.0;HRun=0;HaplotypeScore=516.7727;IndelType=I;MQ=32.32;MQ0=0;MQRankSum=0.19;QD=36.25;ReadPosRankSum=-1.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    0/1:29,9:40:99:1489,0,364
14    76330279    rs9919890    G    A    86.61    HaplotypeScoreFilter13;MQFilter40    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.8564;MQ=34.37;MQ0=0;MQRankSum=1.281;QD=2.89;ReadPosRankSum=0.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    0/1:19,11:30:57.14:117,0,57
14    76352929    rs1882827    C    T    776.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=38.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286653    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:809,60,0
14    76368544    rs1133834    T    C    573.33    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=45;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.176;QD=12.74;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=F1267S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_76368485_76368567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTLL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298832    GT:AD:DP:GQ:PL    0/1:25,20:45:99:603,0,765
14    76429555    rs3917201    C    T    505.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TGFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238682    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:538,42,0
14    76432136    rs3917187    T    C    443.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TGFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238682    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:476,36,0
14    76488551    rs2058941    A    G    202.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IFT43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238628    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:236,21,0
14    76548783    rs137916626    GGACCTT    G    1531.78    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=5.405;DB;DP=55;FS=0.0;HRun=0;HaplotypeScore=352.4285;IndelType=D;MQ=48.68;MQ0=0;MQRankSum=-5.709;QD=27.85;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IFT43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238628    GT:AD:DP:GQ:PL    0/1:30,25:55:99:1571,0,2891
14    76549752    rs8536    G    A    864.11    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=54;Dels=0.0;FS=1.179;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.634;QD=16.0;ReadPosRankSum=0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IFT43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553438    GT:AD:DP:GQ:PL    0/1:24,30:54:99:894,0,680
14    76638466    rs3783997    A    G    212.06    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.215;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.678;QD=14.14;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261530    GT:AD:DP:GQ:PL    0/1:8,7:15:99:242,0,285
14    76662446    rs1900127    C    T    93.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;MQRankSum=-1.718;QD=7.78;ReadPosRankSum=1.191;SNPEFF_AMINO_ACID_CHANGE=T94I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_76662221_76662928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf118;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553588    GT:AD:DP:GQ:PL    0/1:6,6:12:99:123,0,214
14    76668356    rs2166322    A    G    296.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.709;QD=19.76;ReadPosRankSum=0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C14orf118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554375    GT:AD:DP:GQ:PL    0/1:6,9:15:99:326,0,201
14    76906157    rs12432875    T    C    124.92    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.88;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261532    GT:AD:DP:GQ:PL    0/1:4,5:9:99:155,0,123
14    76948262    rs35641516    C    CT    158.84    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=18.0297;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=1.159;QD=17.65;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261532    GT:AD:DP:GQ:PL    0/1:4,5:9:99:198,0,129
14    76948862    rs10134248    T    C    136.30    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.747;QD=15.14;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507951    GT:AD:DP:GQ:PL    0/1:1,8:9:24.59:166,0,25
14    76957887    rs2361293    T    C    243.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=Y295;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_76957790_76958059;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRRB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261532    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:277,24,0
14    77101031    rs112578361    CTTTTT    C    304.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=20;HaplotypeScore=160.8737;IndelType=D;MQ=42.64;MQ0=0;QD=17.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-187O7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464073    GT:AD:DP:GQ:PL    1/1:2,10:16:28.92:347,29,0
14    77101281    rs1676267    C    T    1970.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.09;MQ0=1;QD=25.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-187O7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464073    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2004,186,0
14    77101336    rs12590505    C    T    2299.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.25;MQ0=0;QD=32.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-187O7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464073    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2333,198,0
14    77101539    rs1676266    T    C    2994.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=54.47;MQ0=0;QD=32.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-187O7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464073    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3027,229,0
14    77101828    rs35588655    G    GC    2150.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=174.6657;IndelType=I;MQ=45.64;MQ0=0;QD=43.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-187O7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464073    GT:AD:DP:GQ:PL    1/1:1,48:47:99:2192,138,0
14    77101869    rs1642838    T    C    1057.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=12.9299;MQ=41.56;MQ0=0;QD=27.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-187O7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464073    GT:AD:DP:GQ:PL    1/1:0,38:38:96.22:1090,96,0
14    77229539    rs2270324    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    77269528    rs6574329    A    G    77.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251089    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
14    77275933    .    G    A    590.88    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.378;DP=34;Dels=0.0;FS=5.752;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.126;QD=17.38;ReadPosRankSum=-0.667;SNPEFF_AMINO_ACID_CHANGE=Q40*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_14_77275402_77275986;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGEL1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000251089    GT:AD:DP:GQ:PL    0/1:12,22:34:99:621,0,364
14    77294930    rs61740619    G    A    141.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=11.77;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=G129R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77294634_77295012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555189    GT:AD:DP:GQ:PL    0/1:6,6:12:99:171,0,211
14    77304292    rs4903497    T    C    124.45    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.169;DB;DP=23;Dels=0.0;FS=4.4;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=5.41;ReadPosRankSum=-1.102;SNPEFF_AMINO_ACID_CHANGE=S174;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77304218_77304314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450042    GT:AD:DP:GQ:PL    0/1:16,7:23:99:154,0,529
14    77304334    rs12887319    G    A    263.59    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.626;QD=18.83;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    0/1:4,10:14:99:294,0,119
14    77311296    rs12896621    A    G    882.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460005    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:915,66,0
14    77311473    rs12897081    C    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    77325585    rs57840012    T    C    1023.56    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=1.261;DB;DP=57;Dels=0.0;FS=4.699;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=17.96;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    0/1:23,34:57:99:1054,0,642
14    77327254    rs45536531    T    G    679.94    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.015;DB;DP=47;Dels=0.0;FS=1.738;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.117;QD=14.47;ReadPosRankSum=-0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    0/1:22,25:47:99:710,0,703
14    77327324    rs4619325    A    T    357.01    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.558;QD=21.0;ReadPosRankSum=3.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    0/1:6,11:17:99:387,0,188
14    77332197    rs1882843    T    C    269.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:303,24,0
14    77332247    .    G    A    321.67    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.273;QD=9.75;ReadPosRankSum=-0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    0/1:19,14:33:99:352,0,513
14    77332367    rs1882844    C    T    2407.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5741;MQ=58.82;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=P436;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77332311_77332418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2441,187,0
14    77332408    rs7160583    T    C    1105    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=85;Dels=0.0;FS=4.312;HRun=0;HaplotypeScore=3.4664;MQ=59.51;MQ0=0;MQRankSum=2.181;QD=13.0;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=V450A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77332311_77332418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    0/1:42,41:85:99:1135,0,1339
14    77333852    rs2293805    A    G    578.36    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.147;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.346;QD=17.53;ReadPosRankSum=-1.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    0/1:14,19:33:99:608,0,448
14    77333963    rs2242629    C    T    125.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=12;Dels=0.0;FS=2.632;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=10.45;ReadPosRankSum=-1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    0/1:6,6:12:99:155,0,204
14    77336428    rs11625243    G    A    2065.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf166B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393774    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2098,157,0
14    77492891    rs879027    G    A    417.06    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.228;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.551;QD=18.13;ReadPosRankSum=-1.543;SNPEFF_AMINO_ACID_CHANGE=Y415;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77490888_77495034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2BPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238647    GT:AD:DP:GQ:PL    0/1:9,14:23:99:447,0,243
14    77493647    rs61991619    A    G    32.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.922;QD=3.64;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=A163;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77490888_77495034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2BPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238647    GT:AD:DP:GQ:PL    0/1:4,4:9:62.75:63,0,144
14    77493875    rs71428775    T    C    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.96;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=E87;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77490888_77495034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2BPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238647    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,67
14    77685383    rs1319322    G    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554346    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
14    77697967    rs375566    A    G    1038.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=A129;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77697931_77698073;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298351    GT:AD:DP:GQ:PL    1/1:0,33:33:93.25:1072,93,0
14    77698214    rs376281    A    G    116.18    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.736;QD=19.36;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554766    GT:AD:DP:GQ:PL    0/1:1,5:6:20.20:146,0,20
14    77699933    rs17750404    C    T    241.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.949;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.457;QD=11.48;ReadPosRankSum=0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554766    GT:AD:DP:GQ:PL    0/1:12,9:21:99:271,0,361
14    77703057    rs403291    A    G    2584.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8273;MQ=59.42;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=A211;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77702967_77703075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298351    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2618,199,0
14    77704974    rs8010477    G    C    2022.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298351    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2056,153,0
14    77705726    rs4899646    C    T    337.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=30;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.402;QD=11.26;ReadPosRankSum=0.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298351    GT:AD:DP:GQ:PL    0/1:18,12:30:99:368,0,527
14    77709120    rs2287380    A    G    864.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298351    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:898,69,0
14    77709450    rs409109    T    G    1544.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298351    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1578,117,0
14    77709477    rs409306    A    G    952.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298351    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:985,78,0
14    77711077    rs436221    C    T    34.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM63C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298351    GT:AD:DP:GQ:PL    1/1:0,4:4:6.01:66,6,0
14    77745193    rs3209079    A    C    608.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=L637;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77745072_77745212;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261534    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:641,48,0
14    77750057    rs2216089    T    G    668.09    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.993;DB;DP=53;Dels=0.0;FS=1.623;HRun=1;HaplotypeScore=1.9443;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=12.61;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553880    GT:AD:DP:GQ:PL    0/1:29,24:53:99:698,0,1014
14    77751729    rs3815625    T    C    1326.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556404    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1360,102,0
14    77751925    rs2270419    C    T    7859.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=247;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=R461;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77751824_77751975;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261534    GT:AD:DP:GQ:PL    1/1:1,246:247:99:7859,617,0
14    77755221    rs2287387    T    G    177.15    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.874;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=10.42;ReadPosRankSum=1.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261534    GT:AD:DP:GQ:PL    0/1:10,7:17:99:207,0,348
14    77755326    rs76350342    G    A    155.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261534    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
14    77764884    rs7143099    G    A    34.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.75;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553863    GT:AD:DP:GQ:PL    0/1:2,2:4:62.67:65,0,63
14    77778207    rs181302842    C    T    68.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.72;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261534    GT:AD:DP:GQ:PL    0/1:4,3:7:98.02:98,0,145
14    77787080    .    C    T    53.09    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=6.64;ReadPosRankSum=0.322;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_14_77786777_77787227;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POMT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261534    GT:AD:DP:GQ:PL    0/1:5,3:8:83.08:83,0,97
14    77793207    rs7975    G    A    68.77    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=2.533;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=5.73;ReadPosRankSum=-1.788;SNPEFF_AMINO_ACID_CHANGE=E32K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77793181_77793248;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216465    GT:AD:DP:GQ:PL    0/1:7,5:12:98.76:99,0,207
14    77794283    rs1046428    T    C    741.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=M27T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77794255_77794380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361389    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:775,63,0
14    77795311    rs5809824    CT    C    188.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=14.8116;IndelType=D;MQ=63.51;MQ0=0;QD=31.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553268    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
14    77795638    rs2270423    G    A    88.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=7.38;ReadPosRankSum=-1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553268    GT:AD:DP:GQ:PL    0/1:8,4:12:99:119,0,260
14    77796641    rs731346    G    A    3273.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.09;DB;DP=114;Dels=0.0;FS=3.044;HRun=1;HaplotypeScore=1.787;MQ=59.19;MQ0=0;MQRankSum=0.919;QD=28.71;ReadPosRankSum=0.252;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553268    GT:AD:DP:GQ:PL    1/1:3,111:114:99:3273,190,0
14    77812542    rs11847248    A    T    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216468    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
14    77812646    rs76071665    T    G    175.12    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=13.47;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216468    GT:AD:DP:GQ:PL    0/1:7,6:13:99:205,0,247
14    77873571    rs35881785    C    T    121.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298358    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
14    77880493    rs8005759    C    T    580.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf148;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298358    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:614,45,0
14    77901456    rs963283    C    A    583.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.71;MQ0=0;QD=32.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553576    GT:AD:DP:GQ:PL    1/1:0,17:18:48.13:617,48,0
14    77901758    rs113558496    G    GAAA    924.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.016;DB;DP=33;FS=9.542;HRun=14;HaplotypeScore=259.9997;IndelType=I;MQ=48.37;MQ0=0;MQRankSum=-0.179;QD=28.02;ReadPosRankSum=-1.016;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553691    GT:AD:DP:GQ:PL    1/1:7,17:33:66.95:967,67,0
14    77901908    rs1008669    C    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553691    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
14    77914752    rs2091916    A    G    896.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557466    GT:AD:DP:GQ:PL    1/1:0,27:27:75.20:930,75,0
14    77919418    rs2364157    T    C    252.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556909    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
14    77919587    rs2364158    T    C    5398.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.85;MQ0=0;QD=34.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VIPAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556909    GT:AD:DP:GQ:PL    1/1:0,156:156:99:5398,409,0
14    77926011    rs1061629    C    T    1589.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=32.44;SNPEFF_AMINO_ACID_CHANGE=L45;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77925959_77926149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216479    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1622,123,0
14    77928476    rs12436593    C    T    237.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555517    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:270,21,0
14    77928525    rs1061638    A    G    461.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=Q98;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77928503_77928585;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216479    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:495,36,0
14    77930752    rs11624314    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554156    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
14    77932017    rs7146595    A    C    1056.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554156    GT:AD:DP:GQ:PL    1/1:0,31:31:81.25:1090,81,0
14    77932111    rs7146784    A    G    395.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554156    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:428,33,0
14    77934758    rs4903584    A    G    955.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.96;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556866    GT:AD:DP:GQ:PL    1/1:0,31:31:84.23:989,84,0
14    77934905    rs36001778    A    AT    76.30    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=27;FS=0.0;HRun=19;HaplotypeScore=182.3353;IndelType=I;MQ=52.23;MQ0=0;MQRankSum=-0.529;QD=2.83;ReadPosRankSum=-1.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556866    GT:AD:DP:GQ:PL    0/1:15,8:27:38.44:115,0,38
14    77935520    rs7250    G    A    2408.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=59.68;MQ0=0;QD=32.99;SNPEFF_AMINO_ACID_CHANGE=T180;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77935420_77935590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555133    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2441,181,0
14    77941865    rs11276328    G    GAGGGCCCTACC    6298.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=298.8573;IndelType=I;MQ=33.55;MQ0=0;QD=146.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ISM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487738    GT:AD:DP:GQ:PL    1/1:19,21:43:99:6298,123,0
14    77951124    rs3742728    C    T    411.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=A6T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_77951020_77951262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ISM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393684    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:444,36,0
14    77951502    rs7157218    T    C    77.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ISM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342219    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
14    77984573    rs926114    C    T    873.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216484    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:907,72,0
14    77987958    rs2072672    C    A    448.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216484    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:481,36,0
14    78018246    rs11159275    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554365    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    78018614    rs2178876    C    T    555.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216484    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:588,42,0
14    78021971    rs138521356    T    C    103.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.336;QD=10.34;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216484    GT:AD:DP:GQ:PL    0/1:5,5:10:99:133,0,173
14    78023519    rs2272587    C    G    1103.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216484    GT:AD:DP:GQ:PL    1/1:0,31:31:90.28:1136,90,0
14    78028803    rs2364602    A    G    2291.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.974;QD=35.8;ReadPosRankSum=1.299;SNPEFF_AMINO_ACID_CHANGE=N262;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_78028739_78028832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216484    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2324,171,0
14    78036899    rs11344772    AG    A    1072.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=1;HaplotypeScore=113.7386;IndelType=D;MQ=60.75;MQ0=0;QD=39.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216484    GT:AD:DP:GQ:PL    1/1:1,26:27:81.27:1114,81,0
14    78036935    rs4903606    A    G    468.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216484    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:502,39,0
14    78141858    rs3783981    A    G    115.97    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=19.33;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216489    GT:AD:DP:GQ:PL    0/1:1,5:6:27.18:146,0,27
14    78170896    rs8021036    C    G    372.69    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.984;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.364;QD=13.8;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216489    GT:AD:DP:GQ:PL    0/1:14,13:27:99:403,0,452
14    78174473    rs11159286    A    C    675.32    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.998;DB;DP=53;Dels=0.0;FS=17.021;HRun=0;HaplotypeScore=0.5784;MQ=59.13;MQ0=0;MQRankSum=0.136;QD=12.74;ReadPosRankSum=1.61;SNPEFF_AMINO_ACID_CHANGE=R7;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_78174422_78174551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIRP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000238688    GT:AD:DP:GQ:PL    0/1:27,25:53:99:705,0,749
14    78183706    rs176959    C    T    142.63    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=11.89;ReadPosRankSum=2.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNW1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261531    GT:AD:DP:GQ:PL    0/1:7,5:12:99:173,0,257
14    78184566    rs176960    C    A    2268.39    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.076;DB;DP=139;Dels=0.0;FS=3.089;HRun=1;HaplotypeScore=3.8282;MQ=59.83;MQ0=0;MQRankSum=1.546;QD=16.32;ReadPosRankSum=-0.197;SNPEFF_AMINO_ACID_CHANGE=C519F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_78184296_78184873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNW1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555761    GT:AD:DP:GQ:PL    0/1:63,76:139:99:2298,0,1844
14    78187316    rs176965    A    C    32.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.47;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238688    GT:AD:DP:GQ:PL    0/1:2,3:5:62.32:62,0,72
14    78197365    rs114763    C    T    2039.04    PASS    AB=0.369;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.966;DB;DP=111;Dels=0.0;FS=4.885;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.618;QD=18.37;ReadPosRankSum=0.631;SNPEFF_AMINO_ACID_CHANGE=E171;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_78197331_78197472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNW1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554775    GT:AD:DP:GQ:PL    0/1:41,70:111:99:2069,0,1147
14    78227632    rs2277917    C    G    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLIRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556310    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:69,0,32
14    78325300    rs10146144    T    C    284.83    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.971;QD=14.99;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238561    GT:AD:DP:GQ:PL    0/1:10,9:19:99:315,0,281
14    78325698    rs7149884    C    T    178.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=14.87;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238561    GT:AD:DP:GQ:PL    0/1:6,6:12:99:208,0,164
14    78353368    rs17826188    T    C    207.02    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=38;Dels=0.0;FS=5.193;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.124;QD=5.45;ReadPosRankSum=1.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238561    GT:AD:DP:GQ:PL    0/1:28,10:38:99:237,0,927
14    78374172    rs34272020    C    T    896.39    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.675;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.833;QD=16.3;ReadPosRankSum=-1.782;SNPEFF_AMINO_ACID_CHANGE=S188;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_78374146_78374262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341211    GT:AD:DP:GQ:PL    0/1:20,35:55:99:926,0,550
14    78374327    rs6574411    G    A    166.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=20;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.5784;MQ=57.88;MQ0=0;MQRankSum=1.042;QD=8.34;ReadPosRankSum=0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238561    GT:AD:DP:GQ:PL    0/1:12,8:20:99:197,0,428
14    78716226    rs8003110    C    T    76.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NRXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330071    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:109,9,0
14    78748366    rs10147289    C    T    247.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NRXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330071    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
14    79181046    rs1465481    A    T    5884.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=59.62;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NRXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330071    GT:AD:DP:GQ:PL    1/1:0,171:171:99:5885,430,0
14    79276732    .    AC    A    371.42    PASS    AC=2;AF=1.00;AN=2;DP=13;FS=0.0;HRun=1;HaplotypeScore=96.5181;IndelType=D;MQ=54.44;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NRXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330071    GT:AD:DP:GQ:PL    1/1:7,6:13:38.78:413,39,0
14    79433527    rs111478678    G    GT    71.31    QDFilter2    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=1.43;DB;DP=40;FS=0.0;HRun=15;HaplotypeScore=310.3827;IndelType=I;MQ=55.83;MQ0=0;MQRankSum=-1.524;QD=1.78;ReadPosRankSum=-0.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NRXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330071    GT:AD:DP:GQ:PL    0/1:29,6:40:99:110,0,240
14    80158755    rs188636369    C    T    142.63    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.97;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NRXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281127    GT:AD:DP:GQ:PL    0/1:6,5:11:99:173,0,194
14    80669580    rs225014    T    C    920.21    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.09;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6336;MQ=55.33;MQ0=0;MQRankSum=-0.282;QD=13.73;ReadPosRankSum=0.152;SNPEFF_AMINO_ACID_CHANGE=T128A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_80668941_80669631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555750    GT:AD:DP:GQ:PL    0/1:30,37:67:99:950,0,813
14    80669639    rs72035234    T    TA    114.56    PASS    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=51;FS=4.314;HRun=15;HaplotypeScore=305.4533;IndelType=I;MQ=53.03;MQ0=0;MQRankSum=-0.377;QD=2.25;ReadPosRankSum=-0.728;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388838    GT:AD:DP:GQ:PL    0/1:40,9:51:99:154,0,203
14    80672208    rs225011    T    C    162.20    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=6.49;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388838    GT:AD:DP:GQ:PL    0/1:18,7:25:99:192,0,657
14    80672279    rs225010    C    T    72.57    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=9.07;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388838    GT:AD:DP:GQ:PL    0/1:5,3:8:99:103,0,158
14    80993330    rs34838656    G    GA    294.53    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=0.192;DB;DP=33;FS=0.0;HRun=12;HaplotypeScore=111.1424;IndelType=I;MQ=60.33;MQ0=0;MQRankSum=1.013;QD=8.93;ReadPosRankSum=-0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281129    GT:AD:DP:GQ:PL    0/1:20,13:33:99:334,0,166
14    81025522    rs1530771    C    A    205.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.339;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=14.71;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281129    GT:AD:DP:GQ:PL    0/1:7,7:14:99:236,0,253
14    81046810    rs71456210    A    AACGAGTT    1773.28    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.548;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=185.359;IndelType=I;MQ=48.47;MQ0=0;MQRankSum=-4.505;QD=49.26;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281129    GT:AD:DP:GQ:PL    0/1:23,13:36:99:1812,0,1040
14    81251255    rs327463    T    C    2204.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=H732R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81251239_81251889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281129    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2238,166,0
14    81259254    rs45535733    A    T    1172.64    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.004;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.366;QD=15.64;ReadPosRankSum=-0.526;SNPEFF_AMINO_ACID_CHANGE=A470;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81259104_81259454;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000281129    GT:AD:DP:GQ:PL    0/1:35,40:75:99:1203,0,1162
14    81329059    rs75446124    C    A    792.08    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=61;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.865;QD=12.98;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216517    GT:AD:DP:GQ:PL    0/1:31,30:61:99:822,0,938
14    81360750    rs10141970    C    T    85.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327841    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
14    81360893    rs34375242    C    CA    979.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=10;HaplotypeScore=121.8773;IndelType=I;MQ=60.29;MQ0=0;QD=29.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327841    GT:AD:DP:GQ:PL    1/1:1,32:33:96.24:1022,96,0
14    81360958    rs2288347    C    T    2266.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=33.83;SNPEFF_AMINO_ACID_CHANGE=V177I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81360923_81361021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327841    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2300,169,0
14    81371088    rs8016507    A    G    869.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.509;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.168;QD=27.16;ReadPosRankSum=0.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554298    GT:AD:DP:GQ:PL    1/1:1,31:32:35.24:902,35,0
14    81382572    rs12434318    G    A    156.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556981    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:190,15,0
14    81422257    rs2239610    G    C    1525.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.491;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.927;QD=35.48;ReadPosRankSum=-0.282;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CEP128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556800    GT:AD:DP:GQ:PL    1/1:1,42:43:83.40:1558,83,0
14    81528412    rs17111401    T    A    197.56    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.815;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.449;QD=10.98;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298171    GT:AD:DP:GQ:PL    0/1:11,7:18:99:228,0,359
14    81534440    rs11159490    T    C    34.95    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.99;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298171    GT:AD:DP:GQ:PL    0/1:5,2:7:64.95:65,0,123
14    81557279    rs10147011    G    T    61.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.84;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298171    GT:AD:DP:GQ:PL    0/1:4,3:7:91.87:92,0,143
14    81558806    rs2075176    C    T    335.98    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=18.67;ReadPosRankSum=-0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555326    GT:AD:DP:GQ:PL    0/1:7,11:18:99:366,0,232
14    81558965    rs2241119    A    G    411.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=35;Dels=0.0;FS=3.003;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.297;QD=11.77;ReadPosRankSum=-0.577;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555326    GT:AD:DP:GQ:PL    0/1:21,14:35:99:442,0,660
14    81562998    rs2075179    T    C    266.90    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=21;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=1.57;MQ=60.0;MQ0=0;MQRankSum=-1.162;QD=12.71;ReadPosRankSum=-1.444;SNPEFF_AMINO_ACID_CHANGE=N187;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81562983_81563051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298171    GT:AD:DP:GQ:PL    0/1:11,10:21:99:297,0,364
14    81574687    rs3837640    T    TTCTC    799.31    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.899;DB;DP=39;FS=8.744;HRun=0;HaplotypeScore=144.6371;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=-0.871;QD=20.5;ReadPosRankSum=1.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298171    GT:AD:DP:GQ:PL    0/1:26,13:39:99:838,0,1028
14    81574845    .    T    TTTTTTCTTTTTAC    3488.84    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DP=66;FS=1.0;HRun=0;HaplotypeScore=760.9595;IndelType=I;MQ=50.66;MQ0=0;MQRankSum=-4.517;QD=52.07;ReadPosRankSum=-0.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298171    GT:AD:DP:GQ:PL    0/1:49,2:66:99:3489,0,2801
14    81574959    rs3783942    A    G    1072.44    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.393;DB;DP=73;Dels=0.0;FS=10.587;HRun=0;HaplotypeScore=0.6651;MQ=56.09;MQ0=0;MQRankSum=-1.241;QD=14.69;ReadPosRankSum=1.252;SNPEFF_AMINO_ACID_CHANGE=L232;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81574956_81575294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342443    GT:AD:DP:GQ:PL    0/1:37,36:73:99:1102,0,1112
14    81575005    rs3783941    C    A    624.41    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=4.635;DB;DP=53;Dels=0.0;FS=31.729;HRun=1;HaplotypeScore=0.8667;MQ=57.79;MQ0=0;MQRankSum=-1.379;QD=11.78;ReadPosRankSum=-2.589;SNPEFF_AMINO_ACID_CHANGE=R248S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81574956_81575294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342443    GT:AD:DP:GQ:PL    0/1:26,27:53:99:654,0,794
14    81610583    rs1991517    G    C    1861.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=34.47;SNPEFF_AMINO_ACID_CHANGE=E374D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81609654_81610809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TSHR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412429    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1895,138,0
14    81646773    rs72695722    C    A    442.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.239;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.239;QD=18.42;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344860    GT:AD:DP:GQ:PL    0/1:9,15:24:99:472,0,251
14    81652067    rs72695724    T    C    63.27    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.358;QD=12.65;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344860    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:93,0,67
14    81667852    rs8019633    A    T    532    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344860    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:565,42,0
14    81670033    rs1864169    G    T    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344860    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
14    81686938    .    A    AT    228.07    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=1;HaplotypeScore=49.8;IndelType=I;MQ=51.02;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434192    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:270,18,0
14    81737076    rs2241621    A    C    3032.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=S851A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81736851_81737216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267540    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3066,238,0
14    81737290    rs2241622    T    C    494.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267540    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:527,45,0
14    81744736    rs3813535    A    G    2770.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=S307P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_81743245_81745083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267540    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2804,217,0
14    81864618    rs17551467    G    C    423.31    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=22.28;ReadPosRankSum=0.057;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554710    GT:AD:DP:GQ:PL    0/1:6,13:19:99:453,0,120
14    81879363    rs8013454    C    T    717.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=48;Dels=0.0;FS=2.552;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.32;QD=14.94;ReadPosRankSum=-0.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554710    GT:AD:DP:GQ:PL    0/1:24,24:48:99:747,0,718
14    81879468    rs9743610    C    T    660.33    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=38;Dels=0.0;FS=2.879;HRun=0;HaplotypeScore=1.7128;MQ=58.39;MQ0=0;MQRankSum=-1.272;QD=17.38;ReadPosRankSum=1.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STON2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554710    GT:AD:DP:GQ:PL    0/1:17,21:38:99:690,0,519
14    81954386    rs190424539    T    A    134.13    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=22.35;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEL1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555923    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:164,0,23
14    83159052    rs71418905    C    T    338.26    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=-0.31;QD=8.9;ReadPosRankSum=-0.429;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-406A9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554405    GT:AD:DP:GQ:PL    0/1:22,16:38:99:368,0,701
14    86088056    rs10141266    T    C    2760.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3444;MQ=59.44;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=T66;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_86087483_86095034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330753    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2793,223,0
14    88401213    rs421262    T    C    714.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=T430A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88400810_88401222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539620    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:748,60,0
14    88401392    rs433764    G    A    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
14    88406120    rs45626938    C    T    90.33    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=10.04;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557316    GT:AD:DP:GQ:PL    0/1:5,4:9:99:120,0,167
14    88406127    rs45567441    G    C    94.95    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=8.63;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557316    GT:AD:DP:GQ:PL    0/1:6,5:11:99:125,0,209
14    88406404    rs417276    T    C    927.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557316    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:960,81,0
14    88407716    rs34752717    T    TA    780.89    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.513;DB;DP=127;FS=4.18;HRun=13;HaplotypeScore=793.0577;IndelType=I;MQ=55.9;MQ0=0;MQRankSum=-0.408;QD=6.15;ReadPosRankSum=-0.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557316    GT:AD:DP:GQ:PL    0/1:73,45:127:99:820,0,766
14    88407734    rs448805    G    C    4036.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.2697;MQ=56.77;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557316    GT:AD:DP:GQ:PL    1/1:0,158:162:99:4036,340,0
14    88407875    rs421466    T    A    5250.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=V355;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88407739_88407902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539620    GT:AD:DP:GQ:PL    1/1:0,148:149:99:5250,397,0
14    88407888    rs398607    A    G    2291.27    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=3.644;DB;DP=138;Dels=0.0;FS=7.746;HRun=0;HaplotypeScore=5.4924;MQ=58.99;MQ0=0;MQRankSum=-0.539;QD=16.6;ReadPosRankSum=0.038;SNPEFF_AMINO_ACID_CHANGE=I351T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88407739_88407902;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539620    GT:AD:DP:GQ:PL    0/1:61,75:138:99:2321,0,1990
14    88407917    rs12432149    G    A    1374.64    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.086;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4676;MQ=59.06;MQ0=0;MQRankSum=1.618;QD=13.89;ReadPosRankSum=-0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:55,44:99:99:1405,0,1818
14    88408064    rs381069    T    C    64.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.82;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:3,3:6:94.94:95,0,106
14    88411693    rs430536    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
14    88411803    rs444902    T    C    908.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=39.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:942,69,0
14    88411837    rs366615    G    A    722.62    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.465;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.46;MQ0=0;MQRankSum=0.775;QD=16.81;ReadPosRankSum=-0.726;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:18,25:43:99:753,0,520
14    88411947    rs367327    T    C    1865.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_AMINO_ACID_CHANGE=T329;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88411897_88412077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539620    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1898,153,0
14    88414211    rs398076    G    A    204.36    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.321;QD=7.3;ReadPosRankSum=-0.321;SNPEFF_AMINO_ACID_CHANGE=S239;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88414072_88414222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539620    GT:AD:DP:GQ:PL    0/1:17,11:28:99:234,0,512
14    88414283    rs398343    G    A    537.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:571,42,0
14    88416390    rs440426    A    G    611.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    1/1:0,18:18:54.10:644,54,0
14    88417095    rs150148753    GA    G    228.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=11;HaplotypeScore=43.5737;IndelType=D;MQ=56.62;MQ0=0;QD=16.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    1/1:3,11:14:32.94:271,33,0
14    88417161    rs431748    C    T    280.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=31.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
14    88419242    rs10483987    T    C    393.51    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=18;Dels=0.0;FS=5.315;HRun=1;HaplotypeScore=1.9552;MQ=59.84;MQ0=0;MQRankSum=2.07;QD=21.86;ReadPosRankSum=0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:5,13:18:99:423,0,152
14    88420282    rs17760079    A    G    1425.02    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.853;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.38;MQ0=0;MQRankSum=-0.201;QD=13.7;ReadPosRankSum=-1.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:50,54:104:99:1455,0,1607
14    88429690    rs17687109    A    G    586.20    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.875;QD=15.84;ReadPosRankSum=1.767;SNPEFF_AMINO_ACID_CHANGE=L400P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88429660_88429855;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445021    GT:AD:DP:GQ:PL    0/1:17,20:37:99:616,0,497
14    88429980    rs17760374    C    G    195.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=24.48;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477716    GT:AD:DP:GQ:PL    0/1:2,6:8:48.67:226,0,49
14    88431704    rs17760463    T    C    148.09    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.45;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477716    GT:AD:DP:GQ:PL    0/1:4,5:9:99:178,0,140
14    88434557    rs10483988    C    T    239.41    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.572;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=2.0;QD=12.6;ReadPosRankSum=-0.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477716    GT:AD:DP:GQ:PL    0/1:10,9:19:99:269,0,361
14    88434893    rs17687364    G    A    267.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=14.89;ReadPosRankSum=1.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:9,9:18:99:298,0,310
14    88442503    rs4904409    T    A    117.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554916    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:150,12,0
14    88442582    rs76114917    G    A    445.88    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.165;QD=19.39;ReadPosRankSum=0.976;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554916    GT:AD:DP:GQ:PL    0/1:9,14:23:99:476,0,260
14    88442646    rs76521220    A    G    648.29    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.596;DB;DP=45;Dels=0.0;FS=3.595;HRun=0;HaplotypeScore=1.612;MQ=60.0;MQ0=0;MQRankSum=0.172;QD=14.41;ReadPosRankSum=-1.505;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554916    GT:AD:DP:GQ:PL    0/1:19,26:45:99:678,0,592
14    88442712    rs34362748    C    T    1117.69    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.835;DB;DP=67;Dels=0.0;FS=6.672;HRun=1;HaplotypeScore=1.9632;MQ=59.31;MQ0=0;MQRankSum=0.383;QD=16.68;ReadPosRankSum=-0.577;SNPEFF_AMINO_ACID_CHANGE=D192N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88442702_88442832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544807    GT:AD:DP:GQ:PL    0/1:28,39:67:99:1148,0,817
14    88448451    rs17797981    A    G    59.19    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.966;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=6.58;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554372    GT:AD:DP:GQ:PL    0/1:5,4:9:89.18:89,0,154
14    88448486    rs17797987    A    T    249.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.148;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.971;QD=13.85;ReadPosRankSum=0.442;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554372    GT:AD:DP:GQ:PL    0/1:9,9:18:99:279,0,310
14    88448525    rs45568734    A    G    377.80    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.958;DB;DP=34;Dels=0.0;FS=3.837;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.163;QD=11.11;ReadPosRankSum=-1.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554372    GT:AD:DP:GQ:PL    0/1:16,18:34:99:408,0,548
14    88448643    rs79515863    C    T    298.33    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.317;DB;DP=24;Dels=0.0;FS=2.192;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=12.43;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556879    GT:AD:DP:GQ:PL    0/1:13,11:24:99:328,0,395
14    88448695    rs17797993    C    A    60.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.02;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556879    GT:AD:DP:GQ:PL    0/1:3,3:6:90.10:90,0,90
14    88450928    rs77468347    C    T    215.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=15.36;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555956    GT:AD:DP:GQ:PL    0/1:6,8:14:99:245,0,176
14    88452981    rs77466023    C    T    55.66    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=14;Dels=0.0;FS=5.441;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=3.98;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555956    GT:AD:DP:GQ:PL    0/1:10,4:14:85.65:86,0,369
14    88454469    rs74337989    A    T    238.69    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=26;Dels=0.0;FS=1.82;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=9.18;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:15,11:26:99:269,0,431
14    88454910    rs2289511    G    A    919.13    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.901;DB;DP=52;Dels=0.0;FS=1.565;HRun=1;HaplotypeScore=1.9899;MQ=59.56;MQ0=0;MQRankSum=0.03;QD=17.68;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:20,32:52:99:949,0,616
14    88454937    rs74689143    C    T    655.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=4.217;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.34;MQ0=0;MQRankSum=-0.65;QD=18.74;ReadPosRankSum=1.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=GALC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261304    GT:AD:DP:GQ:PL    0/1:15,20:35:99:686,0,389
14    88477413    rs6574978    C    T    1427.47    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.933;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.83;MQ0=0;MQRankSum=0.763;QD=12.86;ReadPosRankSum=0.199;SNPEFF_AMINO_ACID_CHANGE=T74;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88476733_88478419;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR65;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267549    GT:AD:DP:GQ:PL    0/1:62,49:111:99:1457,0,2061
14    88652546    rs78100695    T    C    239.20    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.29;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312350    GT:AD:DP:GQ:PL    0/1:7,11:18:99:269,0,189
14    88693676    rs3825678    C    T    737.64    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.176;DB;DP=49;Dels=0.0;FS=1.764;HRun=1;HaplotypeScore=0.9469;MQ=59.53;MQ0=0;MQRankSum=-0.062;QD=15.05;ReadPosRankSum=0.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312350    GT:AD:DP:GQ:PL    0/1:25,24:49:99:768,0,756
14    88693683    rs3825677    A    G    592.36    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.959;DB;DP=47;Dels=0.0;FS=3.792;HRun=0;HaplotypeScore=0.9469;MQ=59.51;MQ0=0;MQRankSum=0.055;QD=12.6;ReadPosRankSum=1.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312350    GT:AD:DP:GQ:PL    0/1:24,23:47:99:622,0,721
14    88693725    rs2277524    G    C    867.05    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=68;Dels=0.0;FS=2.317;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-2.099;QD=12.75;ReadPosRankSum=0.158;SNPEFF_AMINO_ACID_CHANGE=V220;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88693719_88693879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340700    GT:AD:DP:GQ:PL    0/1:37,31:68:99:897,0,1193
14    88693988    rs2277523    C    T    245.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.368;QD=15.35;ReadPosRankSum=-0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312350    GT:AD:DP:GQ:PL    0/1:8,8:16:99:276,0,272
14    88707225    rs3837636    CA    C    194.57    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.137;DB;DP=35;FS=0.0;HRun=12;HaplotypeScore=133.1241;IndelType=D;MQ=58.99;MQ0=0;MQRankSum=-0.465;QD=5.56;ReadPosRankSum=1.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312350    GT:AD:DP:GQ:PL    0/1:21,13:35:99:234,0,261
14    88729931    rs761971    G    T    146.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.093;QD=11.3;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312350    GT:AD:DP:GQ:PL    0/1:7,6:13:99:177,0,235
14    88737193    rs1298237    T    C    981.75    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.196;DB;DP=88;Dels=0.0;FS=6.931;HRun=3;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=1.265;QD=11.16;ReadPosRankSum=-2.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319231    GT:AD:DP:GQ:PL    0/1:48,40:88:99:1012,0,1655
14    88792816    rs3742690    T    G    1110.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319231    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1143,87,0
14    88852031    rs709886    A    G    163.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554102    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
14    88862529    rs3179969    G    A    1341.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.45;MQ0=0;MQRankSum=-0.33;QD=31.93;ReadPosRankSum=1.65;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA7;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000557248    GT:AD:DP:GQ:PL    1/1:1,41:42:99:1374,102,0
14    88883367    rs845760    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554168    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    88894210    rs2295135    T    G    221.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553885    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:255,18,0
14    88895669    rs386579    T    G    1755.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=58.24;MQ0=0;QD=36.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553885    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1788,135,0
14    88895941    rs61975260    C    G    805.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553885    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:838,60,0
14    88934651    rs366476    G    A    1451.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557249    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1485,114,0
14    88934702    rs2295136    G    A    143.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=6.85;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557249    GT:AD:DP:GQ:PL    0/1:14,7:21:99:174,0,511
14    88935651    rs2274737    A    G    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557249    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
14    88935925    rs2297129    A    G    1402.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.055;QD=30.5;ReadPosRankSum=-0.603;SNPEFF_AMINO_ACID_CHANGE=T1051;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88935843_88936077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328736    GT:AD:DP:GQ:PL    1/1:1,45:46:89.66:1436,90,0
14    88936254    rs2297128    A    G    923.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=29.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557249    GT:AD:DP:GQ:PL    1/1:0,31:31:72.22:956,72,0
14    88938652    rs2274736    A    G    1393.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.96;SNPEFF_AMINO_ACID_CHANGE=V936A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88938588_88938809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328736    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1426,111,0
14    88945591    rs879932    A    G    882.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.11;MQ0=0;QD=33.95;SNPEFF_AMINO_ACID_CHANGE=P728;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88945264_88946696;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328736    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:916,72,0
14    88946622    rs2401751    G    A    1479.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5179;MQ=58.97;MQ0=0;QD=32.87;SNPEFF_AMINO_ACID_CHANGE=L385F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_88945264_88946696;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328736    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1512,114,0
14    88967280    rs45446997    T    C    365.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.515;QD=20.32;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555243    GT:AD:DP:GQ:PL    0/1:6,12:18:99:396,0,191
14    88970925    rs1998670    C    T    857.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328736    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:890,66,0
14    88971758    rs2274735    T    G    2365.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328736    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2399,184,0
14    88974417    rs10143744    T    C    533.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554178    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:566,42,0
14    88983670    rs10150986    G    A    746.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328736    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:780,60,0
14    89037482    rs10682918    C    CAT    3535.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=0;HaplotypeScore=208.4008;IndelType=I;MQ=61.45;MQ0=0;QD=52.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251038    GT:AD:DP:GQ:PL    1/1:0,63:67:99:3536,196,0
14    89039491    rs111789299    G    A    76.70    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.31;MQ0=0;MQRankSum=1.754;QD=10.96;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553495    GT:AD:DP:GQ:PL    0/1:4,3:7:99:107,0,112
14    89042180    rs1469602    T    G    1422.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553495    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1456,111,0
14    89063167    rs2297124    A    G    1535.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.5;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251038    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1569,120,0
14    89069036    rs9323831    T    A    75.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556110    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:108,9,0
14    89082396    rs138476641    A    AT    3011.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.0;HRun=3;HaplotypeScore=172.9531;IndelType=I;MQ=60.18;MQ0=0;QD=38.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555823    GT:AD:DP:GQ:PL    1/1:4,75:79:99:3053,220,0
14    89087278    rs35953031    TA    T    55.07    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.981;DB;DP=98;FS=0.0;HRun=17;HaplotypeScore=729.9516;IndelType=D;MQ=54.18;MQ0=0;MQRankSum=1.419;QD=0.56;ReadPosRankSum=0.414;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553320    GT:AD:DP:GQ:PL    0/1:63,22:98:94.10:94,0,665
14    89089149    rs11382327    C    CT    870.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=10;HaplotypeScore=128.2057;IndelType=I;MQ=60.47;MQ0=0;QD=21.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553962    GT:AD:DP:GQ:PL    1/1:10,30:40:87.18:912,87,0
14    89094243    rs1144916    G    C    1168.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=38.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,30:30:87.29:1202,87,0
14    89105287    rs1152383    T    A    1112.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1146,87,0
14    89148486    rs17260380    C    T    1092.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,28:28:84.24:1126,84,0
14    89151196    rs12886799    G    A    454.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:487,36,0
14    89151392    rs17204164    C    A    1298.05    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.644;DB;DP=114;Dels=0.0;FS=2.457;HRun=1;HaplotypeScore=0.6651;MQ=59.8;MQ0=0;MQRankSum=0.829;QD=11.39;ReadPosRankSum=-1.179;SNPEFF_AMINO_ACID_CHANGE=V945;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_89151359_89151486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    0/1:66,48:114:99:1328,0,2004
14    89161553    rs142151065    CTATGAT    C    596.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=69.3498;IndelType=D;MQ=35.31;MQ0=0;QD=59.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:639,27,0
14    89162978    rs7146508    A    G    166.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
14    89172035    .    C    A    88.07    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7262;MQ=58.78;MQ0=0;MQRankSum=1.2;QD=4.64;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    0/1:5,14:19:37.87:118,0,38
14    89202569    rs8003018    C    T    453.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:486,36,0
14    89205265    rs17188228    T    C    1902.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=I269V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_89205223_89205358;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1935,141,0
14    89221161    rs78068036    T    C    133.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=19.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352093    GT:AD:DP:GQ:PL    1/1:0,7:7:15.01:166,15,0
14    89307320    rs17700296    T    C    2488.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338104    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2521,190,0
14    89310346    rs7155535    T    C    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338104    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
14    89343992    rs1048190    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338104    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
14    89747473    rs7147341    T    C    142.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261302    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
14    90263500    rs9026    T    A    421.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553871    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:455,33,0
14    90263525    rs1555616    C    A    578.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556078    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:611,48,0
14    90303065    rs8021113    T    C    933.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267544    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:967,72,0
14    90303113    rs8019848    A    T    338.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267544    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:371,27,0
14    90303276    rs11159936    T    C    321.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267544    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:354,27,0
14    90303383    rs8020323    A    G    1347.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=S110P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_90303360_90303489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267544    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1380,111,0
14    90303435    rs12437204    T    A    1987.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.19;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=K92N;SNPEFF_CODON_CHANGE=aaA/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_90303360_90303489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267544    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2021,159,0
14    90303445    rs12437206    T    C    1963.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=Q89R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_90303360_90303489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267544    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1997,153,0
14    90451303    rs1296406    A    G    36.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553617    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
14    90456188    rs2401863    G    T    144    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=1.532;QD=12.0;ReadPosRankSum=1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335725    GT:AD:DP:GQ:PL    0/1:7,5:12:99:174,0,219
14    90651357    rs12147332    G    A    110.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.729;QD=11.06;ReadPosRankSum=0.876;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282146    GT:AD:DP:GQ:PL    0/1:6,4:10:99:141,0,145
14    90723000    rs2277515    A    G    248.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261303    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
14    90723059    rs2277514    T    C    69.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261303    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:101,9,0
14    90726676    rs11844225    G    A    1183.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261303    GT:AD:DP:GQ:PL    1/1:0,31:31:90.29:1217,90,0
14    90729460    rs55962513    C    G    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261303    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
14    90729565    rs4904663    G    T    324.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261303    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:358,27,0
14    90729931    rs8022531    T    C    783.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.84;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261303    GT:AD:DP:GQ:PL    1/1:0,22:22:66.16:817,66,0
14    90729984    rs8015510    C    T    1348.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=51.68;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261303    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1381,114,0
14    90730071    rs4811    C    T    1867.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.95;MQ0=5;QD=28.73;SNPEFF_AMINO_ACID_CHANGE=I115;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_90730006_90730191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261303    GT:AD:DP:GQ:PL    1/1:0,64:65:99:1901,150,0
14    90730265    rs2282030    G    A    904.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.77;MQ0=0;QD=34.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554624    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:937,72,0
14    90752908    rs7160304    G    T    470.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf102;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554464    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:503,36,0
14    90754538    rs17799226    C    T    1193.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.251;QD=33.15;ReadPosRankSum=0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf102;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554464    GT:AD:DP:GQ:PL    1/1:1,35:36:57.54:1227,58,0
14    90770210    rs4904670    C    G    1449.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8831;MQ=59.44;MQ0=0;QD=35.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf102;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557064    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1483,114,0
14    90866346    rs2268433    C    T    1847.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.027;DB;DP=126;Dels=0.0;FS=1.662;HRun=0;HaplotypeScore=1.7206;MQ=59.82;MQ0=0;MQRankSum=-0.902;QD=14.66;ReadPosRankSum=-0.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555132    GT:AD:DP:GQ:PL    0/1:63,63:126:99:1878,0,1971
14    91007618    rs1294572    T    C    44.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554654    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
14    91059658    rs1286470    T    C    104.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.64;ReadPosRankSum=-1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    0/1:5,4:9:99:135,0,152
14    91077278    rs3215800    AC    A    449.13    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=2.029;DB;DP=29;FS=0.0;HRun=1;HaplotypeScore=70.3435;IndelType=D;MQ=60.37;MQ0=0;MQRankSum=-0.546;QD=15.49;ReadPosRankSum=0.371;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    0/1:15,14:29:99:488,0,603
14    91110196    rs8014329    G    C    65.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=6.59;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556490    GT:AD:DP:GQ:PL    0/1:5,5:10:95.94:96,0,181
14    91110582    rs3830889    TACATAC    T    844.16    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=28;FS=5.706;HRun=0;HaplotypeScore=200.7763;IndelType=D;MQ=48.16;MQ0=0;MQRankSum=-2.227;QD=30.15;ReadPosRankSum=0.871;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556749    GT:AD:DP:GQ:PL    0/1:17,11:28:99:883,0,643
14    91110623    rs71117367    ACG    A    220.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=98.0883;IndelType=D;MQ=48.43;MQ0=0;MQRankSum=-1.214;QD=20.03;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556749    GT:AD:DP:GQ:PL    1/1:5,6:11:0.17:258,0,0
14    91113471    rs2277512    G    A    166.40    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.482;QD=9.79;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    0/1:9,8:17:99:196,0,322
14    91113537    rs1286422    A    G    88.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
14    91119386    rs188635508    T    C    134.30    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=7.07;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    0/1:12,7:19:99:164,0,436
14    91121273    rs3742661    G    A    251.13    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.421;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.865;MQ=58.71;MQ0=0;MQRankSum=1.111;QD=13.95;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    0/1:8,10:18:99:281,0,244
14    91123575    rs3742660    T    C    640.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_AMINO_ACID_CHANGE=P170;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91123518_91123622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540938    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:674,51,0
14    91124887    rs2277510    G    A    187.17    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=23.4;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    0/1:2,6:8:58.80:217,0,59
14    91142779    rs1077697    C    T    1235.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=28.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1269,105,0
14    91156151    rs942738    G    A    151.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:184,15,0
14    91161862    rs10146731    C    T    1162.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=T151;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91161844_91161922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555768    GT:AD:DP:GQ:PL    1/1:0,36:36:87.29:1196,87,0
14    91162063    rs12893100    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
14    91196288    rs78149614    G    GA    764.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981;DB;DP=37;FS=0.0;HRun=9;HaplotypeScore=218.6559;IndelType=I;MQ=59.63;MQ0=0;MQRankSum=0.638;QD=20.65;ReadPosRankSum=0.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    1/1:6,20:37:56.63:806,57,0
14    91196317    rs10135495    T    C    986.62    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.797;DB;DP=61;Dels=0.0;FS=5.948;HRun=0;HaplotypeScore=2.5106;MQ=59.78;MQ0=0;MQRankSum=0.235;QD=16.17;ReadPosRankSum=0.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328459    GT:AD:DP:GQ:PL    0/1:30,31:61:99:1017,0,827
14    91340019    .    G    C    1160.31    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DP=76;Dels=0.01;FS=18.743;HRun=0;HaplotypeScore=0.9665;MQ=58.85;MQ0=0;MQRankSum=0.589;QD=15.07;ReadPosRankSum=0.211;SNPEFF_AMINO_ACID_CHANGE=S627C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91339976_91340139;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536315    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1190,0,1161
14    91360733    rs77438853    G    GT    733.65    PASS    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.578;DB;DP=58;FS=1.35;HRun=1;HaplotypeScore=142.5662;IndelType=I;MQ=60.56;MQ0=0;MQRankSum=0.302;QD=12.65;ReadPosRankSum=-1.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261991    GT:AD:DP:GQ:PL    0/1:37,21:58:99:773,0,1118
14    91365646    rs11380703    GAA    G    207.89    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.667;DB;DP=45;FS=13.424;HRun=17;HaplotypeScore=431.3572;IndelType=D;MQ=50.57;MQ0=0;MQRankSum=0.809;QD=4.62;ReadPosRankSum=1.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554206    GT:AD:DP:GQ:PL    0/1:15,16:45:99:247,0,434
14    91409615    rs72322733    A    AT    108.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=11;HaplotypeScore=14.4754;IndelType=I;MQ=63.02;MQ0=0;QD=15.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261991    GT:AD:DP:GQ:PL    1/1:2,5:7:15.03:150,15,0
14    91636395    rs4900071    C    T    948.60    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.769;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=58.4;MQ0=0;MQRankSum=0.667;QD=12.99;ReadPosRankSum=1.424;SNPEFF_AMINO_ACID_CHANGE=G102;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91636347_91636545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256324    GT:AD:DP:GQ:PL    0/1:39,34:73:99:979,0,1291
14    91636532    rs4900072    C    T    300.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.8;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.548;QD=12.5;ReadPosRankSum=-1.934;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000520328    GT:AD:DP:GQ:PL    0/1:12,12:24:99:330,0,372
14    91642234    rs2295528    A    G    855.93    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=3.346;DB;DP=56;Dels=0.0;FS=3.859;HRun=2;HaplotypeScore=1.8666;MQ=60.0;MQ0=0;MQRankSum=1.335;QD=15.28;ReadPosRankSum=-0.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519950    GT:AD:DP:GQ:PL    0/1:25,31:56:99:886,0,693
14    91647935    rs11621210    G    T    129.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518649    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
14    91662615    rs2295527    A    G    30.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.08;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256324    GT:AD:DP:GQ:PL    0/1:3,2:5:60.40:60,0,111
14    91662832    rs2295525    A    G    97.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=10.85;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517518    GT:AD:DP:GQ:PL    0/1:5,4:9:99:128,0,161
14    91662886    rs3818201    A    G    32.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.46;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517518    GT:AD:DP:GQ:PL    0/1:4,2:6:62.75:63,0,144
14    91666018    rs12886645    G    A    184.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.425;DB;DP=25;Dels=0.0;FS=11.69;HRun=0;HaplotypeScore=0.9958;MQ=58.13;MQ0=0;MQRankSum=0.381;QD=7.38;ReadPosRankSum=-2.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517518    GT:AD:DP:GQ:PL    0/1:15,10:25:99:214,0,411
14    91671124    rs2295524    G    A    254.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.413;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5253;MQ=59.11;MQ0=0;MQRankSum=0.361;QD=9.79;ReadPosRankSum=-1.747;SNPEFF_AMINO_ACID_CHANGE=D378N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91671050_91671169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525393    GT:AD:DP:GQ:PL    0/1:15,10:26:99:284,0,476
14    91681609    rs28625887    G    A    147.32    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=21.05;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256324    GT:AD:DP:GQ:PL    0/1:2,5:7:61.94:177,0,62
14    91681623    rs11622036    C    T    189.88    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=21.1;ReadPosRankSum=-1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256324    GT:AD:DP:GQ:PL    0/1:2,7:9:57.40:220,0,57
14    91739081    rs941920    A    G    667.04    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=43;Dels=0.0;FS=1.659;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.283;QD=15.51;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=L1992P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91737669_91739997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389857    GT:AD:DP:GQ:PL    0/1:18,25:43:99:697,0,592
14    91739805    rs142295786    C    T    406.51    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.77;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.36;MQ0=0;MQRankSum=2.118;QD=11.29;ReadPosRankSum=-1.059;SNPEFF_AMINO_ACID_CHANGE=V1751I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91737669_91739997;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389857    GT:AD:DP:GQ:PL    0/1:21,15:36:99:437,0,669
14    91763637    rs3742656    C    T    107.18    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.049;DB;DP=17;Dels=0.0;FS=2.307;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=6.3;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389857    GT:AD:DP:GQ:PL    0/1:10,7:17:99:137,0,324
14    91772026    rs56140907    C    T    266.32    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.513;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.098;QD=15.67;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389857    GT:AD:DP:GQ:PL    0/1:7,10:17:99:296,0,211
14    91772522    rs1285764    A    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389857    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
14    91773568    rs1970912    T    C    448.82    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.279;QD=13.6;ReadPosRankSum=-1.135;SNPEFF_AMINO_ACID_CHANGE=L1003;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91773382_91773570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389857    GT:AD:DP:GQ:PL    0/1:17,16:33:99:479,0,533
14    91787336    rs1285766    T    C    75.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389857    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
14    91806204    rs12883434    C    A    101.07    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=7.77;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553437    GT:AD:DP:GQ:PL    0/1:8,5:13:99:131,0,258
14    91874956    rs2295882    T    C    748.85    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.456;DB;DP=61;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.5784;MQ=59.31;MQ0=0;MQRankSum=0.223;QD=12.28;ReadPosRankSum=0.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389856    GT:AD:DP:GQ:PL    0/1:34,27:61:99:779,0,1075
14    91883129    rs45437097    G    A    1992.14    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=139;Dels=0.0;FS=1.532;HRun=0;HaplotypeScore=4.6191;MQ=59.67;MQ0=0;MQRankSum=-0.093;QD=14.33;ReadPosRankSum=-1.352;SNPEFF_AMINO_ACID_CHANGE=Y2;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91883082_91883170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541408    GT:AD:DP:GQ:PL    0/1:65,73:139:99:2022,0,1983
14    91883267    rs1285844    A    C    875.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389856    GT:AD:DP:GQ:PL    1/1:0,26:27:72.21:909,72,0
14    91883499    rs1742546    G    A    194.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.051;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.092;QD=8.1;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389856    GT:AD:DP:GQ:PL    0/1:16,8:24:99:224,0,387
14    91884116    rs3742653    C    A    175.48    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=21.94;ReadPosRankSum=0.572;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCDC88C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389856    GT:AD:DP:GQ:PL    0/1:2,6:8:15.91:205,0,16
14    91928286    rs2273647    C    T    330.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554390    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:363,27,0
14    91928301    rs2273648    C    A    496.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554390    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:529,39,0
14    91928700    rs2273649    G    A    200.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
14    91928908    rs17224453    C    G    91.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.48;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    0/1:4,4:8:99:122,0,139
14    91928933    rs4904784    T    C    377.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
14    91931448    rs2064965    C    A    200.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:233,18,0
14    91942342    rs10145724    T    A    1017.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    1/1:0,33:33:81.26:1050,81,0
14    91942407    rs10145809    T    G    735.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:768,57,0
14    91942461    rs12885921    C    T    37.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.47;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,97
14    91948043    rs17127374    T    C    645.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.563;DB;DP=45;Dels=0.0;FS=1.223;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;MQRankSum=-0.012;QD=14.35;ReadPosRankSum=-0.036;SNPEFF_AMINO_ACID_CHANGE=T264;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_91947920_91948537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    0/1:22,22:45:99:676,0,685
14    91948643    rs6575195    G    A    290.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=36.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554511    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
14    91957236    rs10131200    T    A    59.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=3.6564;MQ=38.13;MQ0=0;QD=6.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMEK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337238    GT:AD:DP:GQ:PL    1/1:0,9:9:9.01:91,9,0
14    92041075    rs1704614    C    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL133373.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498919    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
14    92047109    rs1743181    A    G    224.10    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=28.01;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    0/1:1,7:8:18.57:254,0,19
14    92058445    rs1285637    G    A    390.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:423,33,0
14    92070607    rs2402044    C    A    493.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:527,39,0
14    92071222    rs1704654    T    C    1127.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,38:38:87.28:1161,87,0
14    92074408    rs1704646    G    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
14    92074432    rs1743160    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
14    92074545    rs1743159    T    A    521.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:554,42,0
14    92074856    rs1743158    C    A    251.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
14    92083785    rs1621967    A    G    77.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
14    92084004    rs1620238    C    G    1739.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_AMINO_ACID_CHANGE=V779;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92083941_92084080;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1773,129,0
14    92088016    rs1296082    G    A    2806.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7046;MQ=60.0;MQ0=0;QD=37.92;SNPEFF_AMINO_ACID_CHANGE=I732;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92087952_92088281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2839,208,0
14    92102932    rs4900084    A    G    175.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=10.99;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    0/1:10,6:16:99:206,0,338
14    92105643    rs1704630    G    A    60.27    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;Dels=0.0;FS=3.802;HRun=5;HaplotypeScore=2.7591;MQ=58.05;MQ0=0;MQRankSum=-0.38;QD=5.02;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    0/1:7,5:12:90.26:90,0,269
14    92136126    rs3742652    C    G    304.07    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.669;DB;DP=22;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=13.82;ReadPosRankSum=1.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    0/1:10,12:22:99:334,0,293
14    92139032    rs10137809    C    T    326.33    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.569;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.154;QD=14.19;ReadPosRankSum=-1.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    0/1:11,12:23:99:356,0,378
14    92174343    rs4605095    C    T    143.26    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=20.47;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    0/1:2,5:7:58.89:173,0,59
14    92185731    rs17783516    G    A    339.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=24;Dels=0.0;FS=6.628;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=-0.144;QD=14.16;ReadPosRankSum=0.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553676    GT:AD:DP:GQ:PL    0/1:12,12:24:99:370,0,322
14    92189242    rs76686186    T    C    123.04    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=9.46;ReadPosRankSum=1.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553676    GT:AD:DP:GQ:PL    0/1:8,5:13:99:153,0,284
14    92189366    rs17127513    T    A    592.58    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=0.424;QD=11.18;ReadPosRankSum=0.551;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553676    GT:AD:DP:GQ:PL    0/1:31,22:53:99:623,0,922
14    92189548    rs35078318    G    GA    173.17    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.305;DB;DP=23;FS=0.0;HRun=11;HaplotypeScore=52.0317;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.888;QD=7.53;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    0/1:13,9:23:99:212,0,199
14    92191350    rs3814837    C    T    70.10    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.76;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CATSPERB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256343    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,174
14    92251363    rs4598831    C    T    248.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TC2N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340892    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
14    92254162    rs10140522    T    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TC2N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340892    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
14    92258565    rs11429165    T    TA    210.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=3;HaplotypeScore=10.888;IndelType=I;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TC2N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340892    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:252,18,0
14    92264080    rs112455274    TA    T    646.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=46;FS=0.0;HRun=14;HaplotypeScore=155.39;IndelType=D;MQ=59.71;MQ0=0;MQRankSum=0.648;QD=14.05;ReadPosRankSum=0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TC2N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340892    GT:AD:DP:GQ:PL    1/1:10,36:46:17.75:688,18,0
14    92265160    rs10873413    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TC2N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340892    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    92268615    rs2402073    T    G    1047.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.76;SNPEFF_AMINO_ACID_CHANGE=K151T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92268598_92268765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TC2N;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340892    GT:AD:DP:GQ:PL    1/1:0,33:33:87.26:1081,87,0
14    92280037    rs10134181    T    C    1176.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TC2N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340892    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1209,87,0
14    92343764    rs2430341    C    T    1264.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBLN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267620    GT:AD:DP:GQ:PL    1/1:0,36:36:96.31:1297,96,0
14    92347467    rs113395651    A    ACC    356.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=52.3526;IndelType=I;MQ=53.04;MQ0=0;QD=44.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBLN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267620    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:398,24,0
14    92347478    .    C    CAT    314.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;FS=0.0;HRun=0;HaplotypeScore=61.3372;IndelType=I;MQ=53.85;MQ0=0;MQRankSum=-0.751;QD=34.94;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBLN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267620    GT:AD:DP:GQ:PL    1/1:3,6:9:11.83:356,12,0
14    92347680    rs2430347    A    G    1409.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_AMINO_ACID_CHANGE=I315;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92347636_92347762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBLN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342058    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1442,117,0
14    92403660    rs2474028    T    C    30.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.12;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBLN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557570    GT:AD:DP:GQ:PL    0/1:4,2:6:60.68:61,0,139
14    92441066    rs1051340    C    T    578.10    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=2.536;DB;DP=28;Dels=0.0;FS=2.442;HRun=0;HaplotypeScore=0.0;MQ=57.48;MQ0=0;MQRankSum=0.929;QD=20.65;ReadPosRankSum=-0.778;SNPEFF_AMINO_ACID_CHANGE=G1563S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92440971_92441087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542257    GT:AD:DP:GQ:PL    0/1:11,17:28:99:608,0,216
14    92454604    rs2273182    A    G    145.83    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.8136;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=12.15;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    0/1:5,7:12:99:176,0,158
14    92454748    rs2273184    A    T    97.47    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.558;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6809;MQ=58.63;MQ0=0;MQRankSum=-0.452;QD=5.73;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    0/1:11,6:17:99:127,0,371
14    92460098    rs2273185    C    A    261.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.472;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=14.54;ReadPosRankSum=0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    0/1:9,9:18:99:292,0,306
14    92473943    rs3818095    T    C    895.48    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=4.314;DB;DP=48;Dels=0.0;FS=3.055;HRun=0;HaplotypeScore=1.6646;MQ=60.0;MQ0=0;MQRankSum=-1.852;QD=18.66;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    0/1:22,26:48:99:925,0,731
14    92477168    rs2277526    A    G    166.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
14    92481047    rs11160036    A    C    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555516    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:75,0,32
14    92484227    rs11849778    T    C    85.42    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.24;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    0/1:1,5:6:26.72:115,0,27
14    92491853    rs2295171    T    C    126.20    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.9997;MQ=57.9;MQ0=0;MQRankSum=-0.751;QD=14.02;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    0/1:1,8:9:21.95:156,0,22
14    92499848    rs7143499    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
14    92499856    rs7143506    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267622    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    92530513    rs709930    C    T    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526245    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
14    92537163    rs3092822    T    G    330.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.013;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=54.85;MQ0=0;MQRankSum=1.779;QD=11.79;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553287    GT:AD:DP:GQ:PL    0/1:16,12:28:99:360,0,462
14    92537223    rs7158733    G    T    563.65    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=4.599;DB;DP=43;Dels=0.0;FS=1.559;HRun=1;HaplotypeScore=1.57;MQ=54.39;MQ0=0;MQRankSum=0.581;QD=13.11;ReadPosRankSum=2.148;SNPEFF_AMINO_ACID_CHANGE=Y349*;SNPEFF_CODON_CHANGE=taC/taA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_14_92537089_92537397;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000532032    GT:AD:DP:GQ:PL    0/1:24,19:43:99:594,0,579
14    92537354    rs12895357    C    G    392.81    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.398;DB;DP=46;Dels=0.0;FS=4.524;HRun=0;HaplotypeScore=4.9325;MQ=48.99;MQ0=0;MQRankSum=0.572;QD=8.54;ReadPosRankSum=1.132;SNPEFF_AMINO_ACID_CHANGE=G127R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92537279_92537397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502250    GT:AD:DP:GQ:PL    0/1:21,25:46:99:423,0,546
14    92537379    rs12896583    T    C    424.80    SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.505;DB;DP=46;Dels=0.0;FS=1.203;HRun=0;HaplotypeScore=2.8995;MQ=43.82;MQ0=0;MQRankSum=-2.329;QD=9.23;ReadPosRankSum=-0.769;SNPEFF_AMINO_ACID_CHANGE=Q118;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92537279_92537397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502250    GT:AD:DP:GQ:PL    0/1:23,23:46:99:455,0,457
14    92537387    rs12896588    T    G    213.32    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.698;DB;DP=40;Dels=0.02;FS=2.906;HRun=0;HaplotypeScore=2.8995;MQ=43.02;MQ0=0;MQRankSum=-3.382;QD=5.2;ReadPosRankSum=-3.989;SNPEFF_AMINO_ACID_CHANGE=K116Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92537279_92537397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502250    GT:AD:DP:GQ:PL    0/1:24,16:40:99:243,0,524
14    92537388    rs12896589    T    C    188.57    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.311;DB;DP=40;Dels=0.02;FS=1.309;HRun=0;HaplotypeScore=2.8995;MQ=43.02;MQ0=0;MQRankSum=-3.768;QD=4.6;ReadPosRankSum=-4.155;SNPEFF_AMINO_ACID_CHANGE=Q115;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92537279_92537397;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502250    GT:AD:DP:GQ:PL    0/1:24,16:40:99:219,0,561
14    92547176    rs761552    G    A    126.65    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=10.55;ReadPosRankSum=-1.977;SNPEFF_AMINO_ACID_CHANGE=R302W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92547169_92547206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539555    GT:AD:DP:GQ:PL    0/1:7,5:12:99:157,0,218
14    92547425    rs761553    C    G    374.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=17.85;ReadPosRankSum=0.959;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526872    GT:AD:DP:GQ:PL    0/1:9,12:21:99:405,0,315
14    92548458    rs2295176    A    G    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.68;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526872    GT:AD:DP:GQ:PL    0/1:3,2:5:68.41:68,0,112
14    92548785    rs1048755    C    T    570.53    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.962;DB;DP=53;Dels=0.0;FS=1.122;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.177;QD=10.76;ReadPosRankSum=2.517;SNPEFF_AMINO_ACID_CHANGE=V106M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92548644_92548810;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000556220    GT:AD:DP:GQ:PL    0/1:31,22:53:99:601,0,990
14    92548896    rs10146519    A    C    118.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=11.88;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340660    GT:AD:DP:GQ:PL    0/1:5,5:10:99:149,0,180
14    92549586    rs16999141    G    A    2344.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=1.6316;MQ=59.31;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=V109;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92549470_92549602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340660    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2377,178,0
14    92549632    rs12590497    C    A    472.19    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=35;Dels=0.0;FS=5.059;HRun=2;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=0.513;QD=13.49;ReadPosRankSum=-0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340660    GT:AD:DP:GQ:PL    0/1:16,19:35:99:502,0,485
14    92555199    rs8003041    T    C    1365.07    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=89;Dels=0.0;FS=5.737;HRun=0;HaplotypeScore=3.5655;MQ=59.74;MQ0=0;MQRankSum=0.392;QD=15.34;ReadPosRankSum=0.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504047    GT:AD:DP:GQ:PL    0/1:43,46:89:99:1395,0,1431
14    92559678    rs4904834    G    C    133.55    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.533;QD=9.54;ReadPosRankSum=1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454964    GT:AD:DP:GQ:PL    0/1:9,5:14:99:164,0,257
14    92559768    rs1997917    T    C    79.39    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=15.88;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454964    GT:AD:DP:GQ:PL    0/1:2,3:5:29.19:109,0,29
14    92560008    rs1997920    G    A    243.32    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.059;QD=15.21;ReadPosRankSum=-2.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454964    GT:AD:DP:GQ:PL    0/1:7,9:16:99:273,0,193
14    92560311    rs2402108    A    G    76.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454964    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
14    92562277    rs17847278    C    T    39.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454964    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
14    92562568    rs12147767    T    C    416.28    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.701;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.361;QD=20.81;ReadPosRankSum=-1.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454964    GT:AD:DP:GQ:PL    0/1:6,14:20:99:446,0,187
14    92562825    rs7493524    G    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    92562967    .    C    CA    37.77    QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DP=31;FS=0.0;HRun=18;HaplotypeScore=323.6572;IndelType=I;MQ=50.32;MQ0=0;MQRankSum=-0.317;QD=1.22;ReadPosRankSum=-1.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340660    GT:AD:DP:GQ:PL    0/1:23,6:31:76.80:77,0,96
14    92563254    rs35079962    AT    A    49.15    QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.858;DB;DP=26;FS=0.0;HRun=15;HaplotypeScore=143.3139;IndelType=D;MQ=55.64;MQ0=0;MQRankSum=1.799;QD=1.89;ReadPosRankSum=0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340660    GT:AD:DP:GQ:PL    0/1:12,8:26:88.10:88,0,88
14    92597242    rs117934581    T    C    365.19    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=21;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.091;QD=17.39;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298875    GT:AD:DP:GQ:PL    0/1:10,11:21:99:395,0,349
14    92788870    rs4144265    C    A    834.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:868,66,0
14    92790077    rs12883151    A    G    34.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.39;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393265    GT:AD:DP:GQ:PL    0/1:1,2:3:14.67:64,0,15
14    92792255    rs941646    G    A    924.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.07;MQ0=0;QD=36.97;SNPEFF_AMINO_ACID_CHANGE=T41;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92792212_92792322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:957,69,0
14    92792432    rs941645    T    C    199.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
14    92905817    rs4900122    A    G    1255.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.782;MQ=58.71;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1289,99,0
14    92908512    rs75348968    T    C    267.19    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.134;QD=12.15;ReadPosRankSum=1.469;SNPEFF_AMINO_ACID_CHANGE=V141A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92908433_92908517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    0/1:13,9:22:99:297,0,422
14    92909073    rs941650    T    C    739.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=H101;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92909057_92909160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393265    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:772,60,0
14    92911593    rs6575255    C    A    810.43    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.635;DB;DP=48;Dels=0.0;FS=8.648;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.717;QD=16.88;ReadPosRankSum=0.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554461    GT:AD:DP:GQ:PL    0/1:19,29:48:99:840,0,635
14    92920371    rs7144273    C    T    758.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.47;SNPEFF_AMINO_ACID_CHANGE=P188;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_92920244_92920413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318079    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:791,60,0
14    92922667    rs56007403    C    T    184.65    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.684;QD=10.86;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    0/1:9,8:17:99:215,0,265
14    92922681    rs7156906    A    G    146.83    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=23;Dels=0.0;FS=2.75;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.126;QD=6.38;ReadPosRankSum=-0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    0/1:14,9:23:99:177,0,434
14    92922713    rs7158400    T    C    1179.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    1/1:0,34:34:93.29:1213,93,0
14    92923626    rs78863223    A    G    383.23    HaplotypeScoreFilter13;MQFilter40    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=29;Dels=0.0;FS=5.722;HRun=1;HaplotypeScore=27.0622;MQ=33.56;MQ0=0;MQRankSum=-0.921;QD=13.21;ReadPosRankSum=0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    0/1:11,18:29:99:413,0,186
14    92923634    rs67723401    CTGT    C    669.96    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.771;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=400.2672;IndelType=D;MQ=35.73;MQ0=0;MQRankSum=0.0;QD=35.26;ReadPosRankSum=0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    0/1:5,14:19:19.36:709,0,19
14    92923638    rs11270511    CATTCCT    C    729.43    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.504;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=376.8027;IndelType=D;MQ=29.0;MQ0=0;MQRankSum=-0.579;QD=48.63;ReadPosRankSum=1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    0/1:1,14:15:16.97:768,0,17
14    92923646    rs60368323    GAA    G    443.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=372.4456;IndelType=D;MQ=29.0;MQ0=0;MQRankSum=-0.579;QD=29.54;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    1/1:1,14:15:7.75:484,8,0
14    92923836    rs67643956    T    C    658.13    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.302;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=-1.912;QD=10.45;ReadPosRankSum=-0.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    0/1:38,24:63:99:688,0,1223
14    92923947    rs17184250    C    T    565.12    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=1.54;DB;DP=71;Dels=0.0;FS=2.987;HRun=0;HaplotypeScore=0.734;MQ=59.35;MQ0=0;MQRankSum=-0.367;QD=7.96;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    0/1:45,26:71:99:595,0,1019
14    92924087    rs10133264    T    C    112.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298877    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:145,12,0
14    92960025    rs4904942    T    C    238.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526482    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:272,21,0
14    92960172    rs12888354    G    A    79.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526482    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
14    93043374    rs7154650    T    C    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216487    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
14    93043378    rs7154653    T    C    87.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216487    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
14    93117787    rs11278705    ACAACCT    A    637.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=79.4393;IndelType=D;MQ=29.0;MQ0=0;QD=57.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216487    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:679,30,0
14    93118198    rs3814830    C    T    571.83    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.84;DB;DP=40;Dels=0.0;FS=1.478;HRun=0;HaplotypeScore=0.7887;MQ=57.05;MQ0=0;MQRankSum=1.571;QD=14.3;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=A268;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93117927_93119420;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216487    GT:AD:DP:GQ:PL    0/1:19,21:40:99:602,0,456
14    93118668    rs3742717    C    T    548.50    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.254;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.856;QD=15.24;ReadPosRankSum=0.254;SNPEFF_AMINO_ACID_CHANGE=T349M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93118515_93119420;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428147    GT:AD:DP:GQ:PL    0/1:17,19:36:99:578,0,492
14    93118669    rs3742716    G    A    464    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.046;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7172;MQ=60.0;MQ0=0;MQRankSum=0.539;QD=12.89;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=T349;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93118515_93119420;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428147    GT:AD:DP:GQ:PL    0/1:19,17:36:99:494,0,589
14    93125790    rs145292991    G    A    692.20    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.14;DB;DP=53;Dels=0.0;FS=3.978;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.002;QD=13.06;ReadPosRankSum=-0.276;SNPEFF_AMINO_ACID_CHANGE=D695N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93125506_93125814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428147    GT:AD:DP:GQ:PL    0/1:27,26:53:99:722,0,729
14    93142534    rs2273925    T    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
14    93143047    rs12886618    G    A    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    93154537    rs71698059    TGGC    T    620.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=98.9904;IndelType=D;MQ=55.12;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=G891-;SNPEFF_CODON_CHANGE=ggc/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_14_93154271_93155332;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428147    GT:AD:DP:GQ:PL    1/1:2,17:19:45.15:663,45,0
14    93170741    rs2250672    T    C    2133.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557725    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2166,178,0
14    93170901    rs2402189    A    C    2774.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.77;MQ0=0;QD=34.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557725    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2808,217,0
14    93170993    rs9791    C    T    6311.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=P360;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93170985_93171052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGMN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262004    GT:AD:DP:GQ:PL    1/1:1,186:187:99:6311,472,0
14    93175780    rs3783934    T    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553802    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
14    93178191    rs1951708    A    G    2560.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.33;MQ0=0;QD=37.1;SNPEFF_AMINO_ACID_CHANGE=D205;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93178182_93178300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGMN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535855    GT:AD:DP:GQ:PL    1/1:0,68:69:99:2593,196,0
14    93178467    rs716097    C    T    109.40    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.63;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553802    GT:AD:DP:GQ:PL    0/1:3,4:7:99:139,0,104
14    93182466    rs1242119    G    A    562.36    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=3.422;DB;DP=56;Dels=0.0;FS=11.716;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.963;QD=10.04;ReadPosRankSum=-0.541;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553371    GT:AD:DP:GQ:PL    0/1:34,22:56:99:592,0,845
14    93199203    rs1613441    T    A    156.08    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=19.51;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262004    GT:AD:DP:GQ:PL    0/1:3,5:8:99:186,0,100
14    93276446    rs116911364    T    G    154.92    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=22.13;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163416    GT:AD:DP:GQ:PL    0/1:1,6:7:23.17:185,0,23
14    93276654    rs1040835    T    C    619.40    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.233;QD=16.3;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=F259L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93276599_93276722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439315    GT:AD:DP:GQ:PL    0/1:17,21:38:99:649,0,524
14    93276806    rs1040833    C    T    246.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.28;DB;DP=20;Dels=0.0;FS=3.139;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=12.32;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163416    GT:AD:DP:GQ:PL    0/1:8,12:20:99:276,0,286
14    93276808    rs1040832    A    G    253.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DB;DP=20;Dels=0.0;FS=3.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.032;QD=12.66;ReadPosRankSum=0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163416    GT:AD:DP:GQ:PL    0/1:8,12:20:99:283,0,283
14    93277899    rs142273431    G    A    556.88    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.055;DB;DP=48;Dels=0.0;FS=19.801;HRun=1;HaplotypeScore=0.9894;MQ=59.52;MQ0=0;MQRankSum=-0.667;QD=11.6;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=E283K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93277896_93278099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439315    GT:AD:DP:GQ:PL    0/1:29,19:48:99:587,0,913
14    93282872    rs140674114    T    TCTTCG    353.32    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=107.914;IndelType=I;MQ=59.06;MQ0=0;MQRankSum=0.717;QD=17.67;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163416    GT:AD:DP:GQ:PL    0/1:13,7:20:99:392,0,235
14    93285962    rs12880298    G    A    320.14    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=16.85;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163416    GT:AD:DP:GQ:PL    0/1:7,12:19:99:350,0,223
14    93286291    rs34178031    AC    A    153    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=10;FS=0.0;HRun=4;HaplotypeScore=30.6316;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.3;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163416    GT:AD:DP:GQ:PL    0/1:3,7:10:60.01:192,0,60
14    93303604    rs4904994    C    T    573.27    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.301;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9298;MQ=58.99;MQ0=0;MQRankSum=1.014;QD=12.46;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163416    GT:AD:DP:GQ:PL    0/1:25,21:46:99:603,0,815
14    93303850    rs4904995    T    TG    1223.12    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=7.094;DB;DP=103;FS=0.0;HRun=0;HaplotypeScore=614.5444;IndelType=I;MQ=56.55;MQ0=0;MQRankSum=-0.966;QD=11.87;ReadPosRankSum=0.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163416    GT:AD:DP:GQ:PL    0/1:65,38:103:99:1262,0,1699
14    93392834    rs7146118    C    A    321.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216492    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:355,27,0
14    93399050    rs9658667    G    A    202.71    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=13;Dels=0.0;FS=7.123;HRun=0;HaplotypeScore=0.8667;MQ=56.35;MQ0=0;MQRankSum=0.212;QD=15.59;ReadPosRankSum=-1.381;SNPEFF_AMINO_ACID_CHANGE=G231S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93398715_93399196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334654    GT:AD:DP:GQ:PL    0/1:5,8:13:99:233,0,133
14    93401178    rs941581    A    G    289.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.92;SNPEFF_AMINO_ACID_CHANGE=E290;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93401146_93401598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334654    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:322,24,0
14    93401316    rs7610    T    C    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553866    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
14    93404674    rs6575304    T    C    235.53    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=57.39;MQ0=0;MQRankSum=1.268;QD=13.09;ReadPosRankSum=-1.721;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216492    GT:AD:DP:GQ:PL    0/1:7,11:18:99:266,0,227
14    93412609    rs1998054    A    G    338.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553695    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:371,33,0
14    93429060    rs2295392    G    A    828    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=60;Dels=0.0;FS=5.324;HRun=1;HaplotypeScore=0.9789;MQ=59.46;MQ0=0;MQRankSum=0.221;QD=13.8;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553655    GT:AD:DP:GQ:PL    0/1:30,30:60:99:858,0,794
14    93482868    rs56857003    C    G    42.15    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=3.83;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267615    GT:AD:DP:GQ:PL    0/1:7,4:11:72.15:72,0,220
14    93649383    rs15837    C    T    112.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283534    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:145,12,0
14    93649501    rs1046099    A    G    805.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.486;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.609;QD=28.77;ReadPosRankSum=-0.99;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf109;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283534    GT:AD:DP:GQ:PL    1/1:1,27:28:41.79:839,42,0
14    93676430    rs3759714    T    A    199.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-371E8.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554824    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
14    93684814    rs10132640    T    C    464.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013070    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:498,36,0
14    93686568    rs71754580    CT    C    204.50    PASS    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.067;DB;DP=71;FS=0.0;HRun=18;HaplotypeScore=582.2496;IndelType=D;MQ=51.27;MQ0=0;MQRankSum=2.086;QD=2.88;ReadPosRankSum=1.564;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-371E8.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557048    GT:AD:DP:GQ:PL    0/1:35,18:71:99:244,0,235
14    93693175    rs11160108    T    G    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=17.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013070    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:120,9,0
14    93723806    rs12147676    T    G    184.37    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=26.34;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BTBD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334746    GT:AD:DP:GQ:PL    0/1:1,6:7:20.17:214,0,20
14    93943998    rs61992606    G    A    999.49    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=4.29;DB;DP=80;Dels=0.0;FS=1.978;HRun=0;HaplotypeScore=0.9665;MQ=59.42;MQ0=0;MQRankSum=1.838;QD=12.49;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=T181;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93943904_93944074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393151    GT:AD:DP:GQ:PL    0/1:45,35:80:99:1029,0,1140
14    93953904    rs61992611    G    A    131.90    HaplotypeScoreFilter13    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=13.9952;MQ=58.83;MQ0=0;MQRankSum=-0.813;QD=8.24;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    0/1:10,6:16:99:162,0,353
14    93953907    rs111982486    A    AT    475.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=11;HaplotypeScore=82.2084;IndelType=I;MQ=57.77;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:3,16:19:51.10:517,51,0
14    93954192    rs12884458    C    T    412.32    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=3.507;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.803;QD=21.7;ReadPosRankSum=0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    0/1:7,12:19:99:442,0,189
14    93962691    rs8006093    G    A    980.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1013,75,0
14    93963402    rs6575337    A    G    69.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.89;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,145
14    93994870    rs17094893    A    G    197.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=14;Dels=0.0;FS=3.256;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=14.1;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    0/1:6,8:14:99:227,0,210
14    93994954    rs28420706    G    A    487.63    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=27;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.025;QD=18.06;ReadPosRankSum=0.716;SNPEFF_AMINO_ACID_CHANGE=P161;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_93994904_93994992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    0/1:11,16:27:99:518,0,295
14    93998806    rs942068    C    A    732.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,19:20:57.19:765,57,0
14    94007075    rs1951716    C    T    1699.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=27.42;SNPEFF_AMINO_ACID_CHANGE=G297;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94007006_94007177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1733,138,0
14    94008753    rs12893237    A    G    174.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
14    94038549    rs2402315    C    A    209.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
14    94063949    rs11160132    C    T    421.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:455,33,0
14    94087775    rs10148274    C    A    207.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
14    94088587    rs4905081    G    A    2799.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=59.72;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=V1493I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94087967_94089187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2833,214,0
14    94097287    rs2148563    G    A    1327.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,39:41:99:1360,105,0
14    94100697    rs751838    C    T    122.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
14    94103602    rs4905082    G    A    1306.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=58.95;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=T1781;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94103562_94103645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1339,99,0
14    94109829    rs943318    G    A    1086.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,30:31:84.27:1119,84,0
14    94152768    rs2296686    C    G    190.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:224,18,0
14    94157873    rs10873435    A    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    94160521    rs943323    C    A    33.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,3:3:6:64,6,0
14    94160611    rs960888    G    A    341.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1409;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256339    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:374,30,0
14    94187832    rs1887197    C    T    816.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=S140;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94184644_94187892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393140    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:850,63,0
14    94192137    rs10873436    C    T    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316227    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
14    94192392    .    G    A    342.90    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.317;QD=12.7;ReadPosRankSum=1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316227    GT:AD:DP:GQ:PL    0/1:15,12:27:99:373,0,495
14    94245649    rs4905087    A    G    656.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=25.26;SNPEFF_AMINO_ACID_CHANGE=H34;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94245522_94245657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRIMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316227    GT:AD:DP:GQ:PL    1/1:0,26:26:57.15:690,57,0
14    94391699    rs10141024    G    A    573.04    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.873;QD=17.91;ReadPosRankSum=-1.23;SNPEFF_AMINO_ACID_CHANGE=A28T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94391394_94391716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM181A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267594    GT:AD:DP:GQ:PL    0/1:11,21:32:99:603,0,370
14    94391847    rs11160153    G    C    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM181A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267594    GT:AD:DP:GQ:PL    0/1:2,2:4:70.42:70,0,73
14    94394345    rs12895134    G    A    76.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.68;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM181A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267594    GT:AD:DP:GQ:PL    0/1:3,3:6:58:106,0,58
14    94405871    rs10873442    G    C    48.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.221;QD=5.42;ReadPosRankSum=1.221;SNPEFF_AMINO_ACID_CHANGE=A298;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94405454_94406018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543546    GT:AD:DP:GQ:PL    0/1:5,4:9:78.81:79,0,142
14    94417064    rs3790054    A    G    97.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=16.18;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555287    GT:AD:DP:GQ:PL    0/1:2,4:6:65.94:127,0,66
14    94417421    rs7147919    G    A    956.95    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.765;DB;DP=75;Dels=0.0;FS=1.193;HRun=0;HaplotypeScore=3.6602;MQ=59.75;MQ0=0;MQRankSum=0.4;QD=12.76;ReadPosRankSum=-0.8;SNPEFF_AMINO_ACID_CHANGE=N114;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94417356_94417590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556062    GT:AD:DP:GQ:PL    0/1:39,36:75:99:987,0,1213
14    94417541    rs4277287    A    G    533.70    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=58.73;MQ0=0;MQRankSum=0.604;QD=16.17;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=N126;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94417345_94417590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543546    GT:AD:DP:GQ:PL    0/1:16,17:33:99:564,0,473
14    94417586    rs4483793    G    A    351.57    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=23;Dels=0.0;FS=3.925;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-1.147;QD=15.29;ReadPosRankSum=-0.031;SNPEFF_AMINO_ACID_CHANGE=C111;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94417345_94417590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543546    GT:AD:DP:GQ:PL    0/1:10,13:23:99:382,0,302
14    94417675    rs4433745    A    C    112    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=11.2;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555287    GT:AD:DP:GQ:PL    0/1:5,5:10:99:142,0,138
14    94419888    rs4243701    A    G    132.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.073;QD=11.04;ReadPosRankSum=-1.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556793    GT:AD:DP:GQ:PL    0/1:6,6:12:99:162,0,212
14    94464432    rs733166    A    G    551.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314629    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:584,42,0
14    94464489    rs10142728    G    A    246.32    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=28;Dels=0.0;FS=1.536;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.395;QD=8.8;ReadPosRankSum=-0.673;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314629    GT:AD:DP:GQ:PL    0/1:16,12:28:99:276,0,477
14    94465789    rs8013933    T    C    180.28    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.324;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=12.02;ReadPosRankSum=-1.448;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314629    GT:AD:DP:GQ:PL    0/1:7,8:15:99:210,0,211
14    94466081    rs4905137    C    G    689.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449472    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:722,57,0
14    94468291    rs10132476    G    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C14orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449472    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,106
14    94503545    rs2273225    T    C    196.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203664    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
14    94503978    rs4905143    G    A    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203664    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
14    94510964    rs2273226    T    C    449.42    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.099;DB;DP=31;Dels=0.0;FS=11.831;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.561;QD=14.5;ReadPosRankSum=0.52;SNPEFF_AMINO_ACID_CHANGE=D112;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94510932_94511126;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000203664    GT:AD:DP:GQ:PL    0/1:15,16:31:99:479,0,420
14    94517533    rs112814907    C    CCAGGG    2238.38    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.718;DB;DP=51;FS=2.504;HRun=0;HaplotypeScore=230.1175;IndelType=I;MQ=56.14;MQ0=0;MQRankSum=-1.032;QD=43.89;ReadPosRankSum=0.451;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203664    GT:AD:DP:GQ:PL    0/1:26,24:51:99:2277,0,1324
14    94519199    rs3790045    C    T    136.14    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.467;QD=9.72;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203664    GT:AD:DP:GQ:PL    0/1:9,5:14:99:166,0,331
14    94521263    rs11624586    C    T    438.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.349;QD=13.28;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330836    GT:AD:DP:GQ:PL    0/1:18,15:33:99:468,0,614
14    94524333    rs11628346    G    C    91.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.0;QD=9.15;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330836    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,220
14    94526302    rs112452849    C    CAA    198.49    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=16;FS=0.0;HRun=13;HaplotypeScore=131.377;IndelType=I;MQ=54.69;MQ0=0;MQRankSum=0.0;QD=12.41;ReadPosRankSum=-2.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330836    GT:AD:DP:GQ:PL    0/1:9,5:16:99:238,0,117
14    94527525    rs11846519    C    T    377.79    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.768;QD=15.11;ReadPosRankSum=-2.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330836    GT:AD:DP:GQ:PL    0/1:12,13:25:99:408,0,411
14    94527534    rs77450541    T    C    309.33    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.838;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=14.06;ReadPosRankSum=-2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330836    GT:AD:DP:GQ:PL    0/1:12,10:22:99:339,0,403
14    94529123    rs34390971    G    A    113.56    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.71;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330836    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:144,0,27
14    94546194    rs11624943    G    A    477.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.441;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.487;QD=17.07;ReadPosRankSum=0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DDX24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330836    GT:AD:DP:GQ:PL    0/1:12,16:28:99:508,0,400
14    94563265    rs79237142    C    T    197.81    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=24.73;ReadPosRankSum=-1.067;SNPEFF_AMINO_ACID_CHANGE=R17*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_14_94563233_94563311;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI27L1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000553664    GT:AD:DP:GQ:PL    0/1:2,6:8:23.70:228,0,24
14    94567032    rs3818119    C    T    1055.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI27L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393115    GT:AD:DP:GQ:PL    1/1:0,36:36:96.21:1088,96,0
14    94567033    rs58664992    C    T    372.09    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.002;DB;DP=38;Dels=0.0;FS=3.804;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.716;QD=9.79;ReadPosRankSum=-0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI27L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393115    GT:AD:DP:GQ:PL    0/1:18,20:38:99:402,0,552
14    94568776    rs2295217    C    T    192.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.384;DB;DP=18;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.088;QD=10.72;ReadPosRankSum=0.353;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI27L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557600    GT:AD:DP:GQ:PL    0/1:9,9:18:99:223,0,326
14    94578162    rs2239644    G    T    460.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298902    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:493,36,0
14    94578188    rs1243080    C    A    398.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298902    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:431,33,0
14    94581285    rs2239645    G    A    249.52    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.437;QD=19.19;ReadPosRankSum=-0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555081    GT:AD:DP:GQ:PL    0/1:3,10:13:89.57:280,0,90
14    94582926    rs2799    C    G    149.22    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=13.57;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554448    GT:AD:DP:GQ:PL    0/1:5,6:11:99:179,0,139
14    94594768    rs958187    T    G    516.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IFI27L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238609    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:549,42,0
14    94595989    rs2273514    T    C    121.55    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=13.51;ReadPosRankSum=-2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IFI27L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556727    GT:AD:DP:GQ:PL    0/1:4,5:9:99:152,0,113
14    94696805    rs41301463    G    T    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328839    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:75,0,30
14    94700138    rs4905172    C    G    943.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553661    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:976,72,0
14    94772504    rs1042394    G    A    480.50    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.039;QD=11.72;ReadPosRankSum=0.67;SNPEFF_AMINO_ACID_CHANGE=L312;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94772408_94772555;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERPINA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341584    GT:AD:DP:GQ:PL    0/1:23,18:41:99:510,0,621
14    94776219    rs2228542    C    T    867.04    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=3.447;DB;DP=49;Dels=0.0;FS=4.763;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=2.342;QD=17.69;ReadPosRankSum=-1.859;SNPEFF_AMINO_ACID_CHANGE=S246;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94776073_94776343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERPINA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341584    GT:AD:DP:GQ:PL    0/1:22,27:49:99:897,0,621
14    94776221    rs2228541    A    C    609.68    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.042;DB;DP=51;Dels=0.0;FS=6.19;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.483;QD=11.95;ReadPosRankSum=1.618;SNPEFF_AMINO_ACID_CHANGE=S246A;SNPEFF_CODON_CHANGE=Tcg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94776073_94776343;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERPINA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341584    GT:AD:DP:GQ:PL    0/1:28,23:51:99:640,0,942
14    94776387    rs2281520    A    G    218.54    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.285;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=15.61;ReadPosRankSum=0.965;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERPINA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557225    GT:AD:DP:GQ:PL    0/1:6,8:14:99:249,0,193
14    94776401    rs11160168    T    C    425.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERPINA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557225    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:458,36,0
14    94780608    rs3748320    G    A    695.28    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=38;Dels=0.0;FS=7.781;HRun=0;HaplotypeScore=1.7172;MQ=60.0;MQ0=0;MQRankSum=-1.057;QD=18.3;ReadPosRankSum=-1.468;SNPEFF_AMINO_ACID_CHANGE=T126;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94780373_94781004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERPINA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341584    GT:AD:DP:GQ:PL    0/1:17,21:38:99:725,0,554
14    94831028    rs34362280    G    C    482.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-304M6.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553483    GT:AD:DP:GQ:PL    1/1:1,14:15:39.12:515,39,0
14    94833033    rs1956172    T    C    691.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-304M6.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553483    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:724,54,0
14    94909024    rs144603054    C    T    124.67    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=8.9;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=R396;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94908801_94909146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334708    GT:AD:DP:GQ:PL    0/1:9,5:14:99:155,0,337
14    94909630    rs3818257    C    T    140.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=14;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=10.03;ReadPosRankSum=0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334708    GT:AD:DP:GQ:PL    0/1:8,6:14:99:170,0,250
14    94912517    rs743208    G    T    199.33    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=11.73;ReadPosRankSum=1.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334708    GT:AD:DP:GQ:PL    0/1:10,7:17:99:229,0,346
14    94912799    rs12888805    G    A    1192.77    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=3.952;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.79;MQ0=0;MQRankSum=-0.917;QD=13.55;ReadPosRankSum=2.231;SNPEFF_AMINO_ACID_CHANGE=T262;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94912668_94912941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334708    GT:AD:DP:GQ:PL    0/1:50,38:88:99:1223,0,1446
14    94912896    rs57740714    T    G    1408.02    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=122;Dels=0.0;FS=1.482;HRun=0;HaplotypeScore=0.9894;MQ=59.66;MQ0=0;MQRankSum=-1.096;QD=11.54;ReadPosRankSum=0.877;SNPEFF_AMINO_ACID_CHANGE=E230A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94912668_94912941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334708    GT:AD:DP:GQ:PL    0/1:72,50:122:99:1438,0,2296
14    94914455    rs10129672    A    T    1596.92    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.664;DB;DP=104;Dels=0.0;FS=2.753;HRun=0;HaplotypeScore=1.9454;MQ=59.78;MQ0=0;MQRankSum=-0.333;QD=15.35;ReadPosRankSum=0.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334708    GT:AD:DP:GQ:PL    0/1:50,54:104:99:1627,0,1528
14    94929541    rs2224418    G    A    648.98    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.814;DB;DP=53;Dels=0.0;FS=5.731;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.256;QD=12.24;ReadPosRankSum=-0.123;SNPEFF_AMINO_ACID_CHANGE=G250;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94929054_94929633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424550    GT:AD:DP:GQ:PL    0/1:29,24:53:99:679,0,902
14    94930956    rs12891900    T    C    80.17    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.05;QD=4.22;ReadPosRankSum=-0.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538527    GT:AD:DP:GQ:PL    0/1:15,4:19:99:110,0,491
14    94930980    rs11628686    A    G    119.93    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.575;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;MQRankSum=1.069;QD=5.45;ReadPosRankSum=-1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298845    GT:AD:DP:GQ:PL    0/1:16,6:22:99:150,0,589
14    94931016    rs8020984    T    G    339.22    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=0.395;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.91;QD=9.42;ReadPosRankSum=1.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298845    GT:AD:DP:GQ:PL    0/1:23,13:36:99:369,0,762
14    94931105    rs11628722    A    G    657.63    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.049;DB;DP=60;Dels=0.0;FS=3.761;HRun=1;HaplotypeScore=0.9894;MQ=59.62;MQ0=0;MQRankSum=0.517;QD=10.96;ReadPosRankSum=0.517;SNPEFF_AMINO_ACID_CHANGE=V199A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94931044_94931191;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424550    GT:AD:DP:GQ:PL    0/1:37,23:60:99:688,0,1045
14    94933709    rs6575433    C    T    206.24    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.941;DB;DP=28;Dels=0.0;FS=3.616;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=7.37;ReadPosRankSum=-1.176;SNPEFF_AMINO_ACID_CHANGE=E131;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94933446_94933719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298845    GT:AD:DP:GQ:PL    0/1:17,11:28:99:236,0,559
14    94935566    rs4900231    G    A    1848.71    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.281;DB;DP=110;Dels=0.0;FS=7.166;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.176;QD=16.81;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=N122;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_94935550_94935661;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298845    GT:AD:DP:GQ:PL    0/1:48,62:110:99:1879,0,1529
14    94936222    rs55683719    G    T    252.49    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.431;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.883;QD=9.02;ReadPosRankSum=-0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298845    GT:AD:DP:GQ:PL    0/1:17,11:28:99:282,0,594
14    94962475    rs1956710    C    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341228    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
14    95033275    rs1005348    T    G    530.57    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.222;DB;DP=38;Dels=0.0;FS=6.768;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.529;QD=13.96;ReadPosRankSum=-0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298841    GT:AD:DP:GQ:PL    0/1:15,23:38:99:561,0,431
14    95033356    rs5510    C    T    787.85    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=63;Dels=0.0;FS=2.222;HRun=2;HaplotypeScore=0.5784;MQ=59.63;MQ0=0;MQRankSum=0.007;QD=12.51;ReadPosRankSum=-0.452;SNPEFF_AMINO_ACID_CHANGE=F233;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95033307_95033580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000298841    GT:AD:DP:GQ:PL    0/1:30,33:63:99:818,0,700
14    95033671    rs3827893    A    T    298.40    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=27.13;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298841    GT:AD:DP:GQ:PL    0/1:2,9:11:43.19:328,0,43
14    95033681    rs10133253    A    G    269.19    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=24.47;ReadPosRankSum=1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298841    GT:AD:DP:GQ:PL    0/1:3,8:11:91:299,0,91
14    95033708    rs17091071    A    C    110.39    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.08;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298841    GT:AD:DP:GQ:PL    0/1:1,4:5:24.27:140,0,24
14    95034342    rs2070777    T    A    149.82    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=58.95;MQ0=0;MQRankSum=0.336;QD=6.81;ReadPosRankSum=-0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298841    GT:AD:DP:GQ:PL    0/1:15,7:22:99:180,0,510
14    95053541    rs2069972    C    T    310.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329597    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:344,27,0
14    95053551    rs2069973    C    G    362.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329597    GT:AD:DP:GQ:PL    1/1:0,12:12:33.06:396,33,0
14    95053572    rs2069974    G    A    509.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329597    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:542,42,0
14    95053890    rs6115    G    A    1200.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=S64N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95053683_95054318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329597    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1233,93,0
14    95054176    rs6112    T    C    1675.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95053976_95054318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537685    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1708,132,0
14    95057270    rs6107    G    A    751.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.45;MQ0=0;QD=35.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553511    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:785,60,0
14    95058360    rs6109    A    G    3470.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.873;MQ=59.54;MQ0=0;QD=34.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553511    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3470,256,0
14    95058462    rs6116    A    C    3529.39    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=3.048;DB;DP=211;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5204;MQ=59.34;MQ0=0;MQRankSum=0.915;QD=16.73;ReadPosRankSum=-0.927;SNPEFF_AMINO_ACID_CHANGE=I145;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95058394_95058472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554506    GT:AD:DP:GQ:PL    0/1:91,119:211:99:3529,0,2530
14    95058614    rs2069990    G    A    1681.87    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.034;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.43;MQ0=0;MQRankSum=1.459;QD=13.79;ReadPosRankSum=-1.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553511    GT:AD:DP:GQ:PL    0/1:67,55:122:99:1712,0,2157
14    95058631    rs6108    A    T    3595.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;QD=38.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553511    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3595,265,0
14    95078677    rs1884082    G    T    1973.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=29.45;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380354    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2006,156,0
14    95080635    rs61976122    C    T    290.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485588    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:324,27,0
14    95089867    rs742897    A    T    351.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555820    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:385,30,0
14    95109739    rs17091191    G    A    396.43    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.536;DB;DP=34;Dels=0.0;FS=1.884;HRun=2;HaplotypeScore=0.734;MQ=59.32;MQ0=0;MQRankSum=1.466;QD=11.66;ReadPosRankSum=0.983;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469935    GT:AD:DP:GQ:PL    0/1:18,16:34:99:426,0,570
14    95110017    rs1884084    G    T    561.02    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=34;Dels=0.0;FS=8.562;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.249;QD=16.5;ReadPosRankSum=-0.798;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469935    GT:AD:DP:GQ:PL    0/1:15,19:34:99:591,0,437
14    95267305    rs35133663    T    C    542.59    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.205;DB;DP=47;Dels=0.0;FS=9.704;HRun=0;HaplotypeScore=1.8317;MQ=44.4;MQ0=0;MQRankSum=0.224;QD=11.54;ReadPosRankSum=2.377;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL15P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490252    GT:AD:DP:GQ:PL    0/1:25,22:47:99:573,0,634
14    95267453    rs111687768    C    T    901.19    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=2.207;DB;DP=49;Dels=0.0;FS=4.189;HRun=0;HaplotypeScore=0.0;MQ=55.67;MQ0=0;MQRankSum=1.251;QD=18.39;ReadPosRankSum=-0.559;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL15P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490252    GT:AD:DP:GQ:PL    0/1:20,29:49:99:931,0,586
14    95556747    rs13078    A    T    252.82    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=14.87;ReadPosRankSum=-0.433;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DICER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527554    GT:AD:DP:GQ:PL    0/1:9,8:17:99:283,0,314
14    95566068    rs71838494    TACACACACACACAC    T    1133.23    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.636;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=455.6647;IndelType=D;MQ=45.28;MQ0=0;MQRankSum=0.194;QD=37.77;ReadPosRankSum=1.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DICER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554367    GT:AD:DP:GQ:PL    0/1:17,13:30:99:1172,0,759
14    95566103    rs35300142    AC    A    60.48    QDFilter2    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=3.972;DB;DP=41;FS=0.0;HRun=1;HaplotypeScore=388.9431;IndelType=D;MQ=47.59;MQ0=0;MQRankSum=-0.139;QD=1.48;ReadPosRankSum=2.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DICER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554367    GT:AD:DP:GQ:PL    0/1:34,7:41:99:100,0,390
14    95566105    rs58202892    ACAC    A    258.79    PASS    AB=0.865;AC=1;AF=0.50;AN=2;BaseQRankSum=4.907;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=435.9215;IndelType=D;MQ=48.19;MQ0=0;MQRankSum=-0.856;QD=5.75;ReadPosRankSum=2.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DICER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554367    GT:AD:DP:GQ:PL    0/1:38,7:45:99:298,0,306
14    95581899    rs2275182    G    A    569.64    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.958;DB;DP=36;Dels=0.0;FS=4.499;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.366;QD=15.82;ReadPosRankSum=-0.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DICER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343455    GT:AD:DP:GQ:PL    0/1:16,20:36:99:600,0,549
14    95595654    rs11620843    T    C    180.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.07;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DICER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527865    GT:AD:DP:GQ:PL    0/1:6,6:12:99:211,0,212
14    95598665    rs4905282    G    C    241.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DICER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527865    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:275,21,0
14    95668918    rs1187618    A    C    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298912    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    95884323    rs12434757    G    A    605.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_AMINO_ACID_CHANGE=A680V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95883941_95884363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000554873    GT:AD:DP:GQ:PL    1/1:0,21:21:57.10:639,57,0
14    95884514    rs12434804    G    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    95898487    rs60574336    G    A    59.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:92,9,0
14    95903027    rs729667    G    C    31.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.39;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555759    GT:AD:DP:GQ:PL    0/1:3,2:5:61.97:62,0,97
14    95905695    rs17092230    C    T    74.29    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.57;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553340    GT:AD:DP:GQ:PL    0/1:1,3:4:23.22:104,0,23
14    95905840    rs17092236    C    T    543.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553340    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:576,45,0
14    95906321    rs9671369    G    A    2528.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7605;MQ=55.98;MQ0=0;QD=29.4;SNPEFF_AMINO_ACID_CHANGE=T425M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95906251_95906412;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000554873    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2562,193,0
14    95906441    rs910791    A    G    2141.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553340    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2175,163,0
14    95906476    rs910790    C    T    1165.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553340    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1199,108,0
14    95909876    rs7144367    A    C    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553340    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
14    95910933    rs9919918    T    C    1580.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_AMINO_ACID_CHANGE=A312;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95910822_95910965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554873    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1613,126,0
14    95911008    rs9919887    A    G    1076.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,35:35:81.27:1110,81,0
14    95911123    rs8007583    G    T    249.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
14    95918466    rs7144636    A    G    709.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:742,60,0
14    95918473    rs7144641    A    G    867.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=56.95;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:901,69,0
14    95918548    rs78625400    AC    A    1720.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=3;HaplotypeScore=233.5445;IndelType=D;MQ=59.31;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1763,144,0
14    95918625    rs4905318    T    C    1401.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=P168;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95918584_95918720;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554873    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1434,114,0
14    95918741    rs4905319    G    A    786.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=55.21;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,26:26:66.18:820,66,0
14    95918745    rs4905320    C    T    796.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.04;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.01;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,24:24:63.17:830,63,0
14    95918759    rs4905321    C    T    744.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.44;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:778,60,0
14    95921741    rs4905324    C    T    681.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=E127;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95921714_95922526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000554873    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:714,54,0
14    95923421    rs72280378    CAA    C    139.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DB;DP=22;FS=0.0;HRun=18;HaplotypeScore=193.2823;IndelType=D;MQ=37.6;MQ0=0;MQRankSum=-1.741;QD=6.06;ReadPosRankSum=-1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:8,12:22:19.68:181,20,0
14    95923470    rs146162422    ACTGTC    A    3424.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DB;DP=59;FS=0.0;HRun=0;HaplotypeScore=458.7044;IndelType=D;MQ=40.72;MQ0=0;MQRankSum=-0.706;QD=57.07;ReadPosRankSum=1.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:5,54:59:78.50:3424,79,0
14    95923670    rs2024863    A    C    2516.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=55.51;MQ0=0;QD=30.31;SNPEFF_AMINO_ACID_CHANGE=R211;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_95923514_95923675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:1,81:83:99:2549,202,0
14    95923806    rs8007606    T    C    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
14    95932223    rs12434921    A    G    147.65    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.659;DB;DP=22;Dels=0.0;FS=1.958;HRun=0;HaplotypeScore=2.1877;MQ=57.87;MQ0=0;MQRankSum=0.964;QD=6.71;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    0/1:14,8:22:99:178,0,357
14    95932628    rs4900270    T    C    289.87    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=15;Dels=0.0;FS=5.74;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.979;QD=19.32;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334258    GT:AD:DP:GQ:PL    0/1:4,11:15:99:320,0,120
14    95999820    rs3825546    T    C    5385.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0608;MQ=59.07;MQ0=0;QD=30.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLRX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331334    GT:AD:DP:GQ:PL    1/1:0,174:175:99:5385,436,0
14    96010589    rs7120    G    A    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GLRX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553672    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
14    96103099    rs4905366    A    G    1361.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.51;MQ0=0;MQRankSum=-0.808;QD=28.97;ReadPosRankSum=-0.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-1070N10.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555032    GT:AD:DP:GQ:PL    1/1:1,46:47:71.34:1395,71,0
14    96103269    rs11160283    G    A    139.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-1070N10.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555032    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:172,15,0
14    96131432    rs1743491    A    G    175.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=sense_overlapping;SNPEFF_GENE_NAME=RP11-1070N10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461160    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
14    96134589    rs7151040    C    T    911.54    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.722;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.985;QD=15.45;ReadPosRankSum=0.841;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=sense_overlapping;SNPEFF_GENE_NAME=RP11-1070N10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461160    GT:AD:DP:GQ:PL    0/1:26,33:59:99:942,0,815
14    96135857    rs1748965    C    T    298.61    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=28;Dels=0.0;FS=6.903;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.531;QD=10.66;ReadPosRankSum=-0.628;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=sense_overlapping;SNPEFF_GENE_NAME=RP11-1070N10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461160    GT:AD:DP:GQ:PL    0/1:18,10:28:99:329,0,477
14    96136775    rs2296310    C    A    567.11    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.967;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.029;QD=14.92;ReadPosRankSum=-1.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486671    GT:AD:DP:GQ:PL    0/1:17,21:38:99:597,0,561
14    96136794    rs2249778    A    G    592.10    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.086;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=1.262;QD=14.8;ReadPosRankSum=-0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TCL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486671    GT:AD:DP:GQ:PL    0/1:17,23:40:99:622,0,530
14    96152728    rs11160284    T    C    501.38    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=28;Dels=0.0;FS=2.764;HRun=1;HaplotypeScore=0.0;MQ=57.48;MQ0=0;MQRankSum=0.386;QD=17.91;ReadPosRankSum=-0.9;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340722    GT:AD:DP:GQ:PL    0/1:9,19:28:99:531,0,286
14    96157331    rs2075770    G    T    254.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340722    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:288,24,0
14    96157679    rs34993719    T    A    327.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.849;MQ=58.95;MQ0=0;MQRankSum=0.362;QD=14.89;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340722    GT:AD:DP:GQ:PL    0/1:11,11:22:99:358,0,229
14    96157698    rs1748958    A    G    603.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCL1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556665    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:636,48,0
14    96178173    rs2296311    G    A    247.23    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=22;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.531;QD=11.24;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402399    GT:AD:DP:GQ:PL    0/1:12,10:22:99:277,0,318
14    96178323    rs2296312    T    C    73.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.31;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402399    GT:AD:DP:GQ:PL    0/1:3,3:6:98.37:104,0,98
14    96180242    rs1122138    C    A    343.33    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.487;QD=11.84;ReadPosRankSum=0.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402399    GT:AD:DP:GQ:PL    0/1:16,13:29:99:373,0,499
14    96703347    rs2069577    C    A    569.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.459;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.36;MQ0=0;MQRankSum=0.413;QD=15.83;ReadPosRankSum=1.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDKRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306005    GT:AD:DP:GQ:PL    0/1:18,18:36:99:600,0,575
14    96707457    rs5224    A    G    303.55    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=22;Dels=0.0;FS=4.32;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.265;QD=13.8;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=T237;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96706740_96707944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDKRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539359    GT:AD:DP:GQ:PL    0/1:12,10:22:99:334,0,285
14    96730142    rs2071084    A    G    401.68    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.931;DB;DP=32;Dels=0.0;FS=10.606;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.703;QD=12.55;ReadPosRankSum=0.399;SNPEFF_AMINO_ACID_CHANGE=P41;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96730010_96731100;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BDKRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216629    GT:AD:DP:GQ:PL    0/1:18,14:32:99:432,0,650
14    96756058    rs144991946    G    C    904.04    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.347;DB;DP=85;Dels=0.0;FS=5.264;HRun=2;HaplotypeScore=5.3384;MQ=59.46;MQ0=0;MQRankSum=-1.465;QD=10.64;ReadPosRankSum=1.588;SNPEFF_AMINO_ACID_CHANGE=R1981G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96755993_96756142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:47,38:85:99:934,0,1336
14    96757361    rs10454690    T    A    291.07    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.693;QD=15.32;ReadPosRankSum=1.858;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554151    GT:AD:DP:GQ:PL    0/1:8,11:19:99:321,0,279
14    96758160    rs2275022    C    T    317.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-2.021;QD=21.14;ReadPosRankSum=-2.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554151    GT:AD:DP:GQ:PL    0/1:5,10:15:99:347,0,164
14    96761514    rs45468796    T    A    609.52    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=32;Dels=0.0;FS=1.735;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.499;QD=19.05;ReadPosRankSum=-1.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:13,19:32:99:640,0,403
14    96761557    rs1770547    A    C    196.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.468;QD=14.03;ReadPosRankSum=-0.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:6,8:14:99:226,0,202
14    96770720    rs8007718    T    G    91.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.194;QD=6.55;ReadPosRankSum=-0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:8,6:14:99:122,0,285
14    96770952    rs36013915    CAA    C    332.45    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.257;DB;DP=61;FS=1.935;HRun=14;HaplotypeScore=360.9763;IndelType=D;MQ=56.29;MQ0=0;MQRankSum=0.183;QD=5.45;ReadPosRankSum=2.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:40,18:61:99:371,0,798
14    96771959    rs2289622    A    G    749.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=I1567T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96771926_96772152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:782,57,0
14    96772330    rs2289623    A    C    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
14    96772942    rs72704880    C    T    48.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=49.96;MQ0=0;MQRankSum=0.727;QD=9.74;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:1,3:5:30.20:79,0,30
14    96776008    rs2289628    A    G    82.55    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=6.35;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:8,5:13:99:113,0,293
14    96778095    rs7359066    T    G    140.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=11.72;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:6,6:12:99:171,0,222
14    96779865    rs7155874    C    T    125.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473234    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
14    96781912    rs9323945    T    C    788.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=N1124D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96781721_96781920;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:822,63,0
14    96783464    rs17094014    C    T    990.65    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.334;DB;DP=80;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.77;MQ0=0;MQRankSum=0.933;QD=12.38;ReadPosRankSum=1.746;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473234    GT:AD:DP:GQ:PL    0/1:44,36:80:99:1021,0,1446
14    96783727    rs17094017    A    T    152.86    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.562;QD=10.19;ReadPosRankSum=-1.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488421    GT:AD:DP:GQ:PL    0/1:8,7:15:99:183,0,287
14    96790337    rs34296665    T    TA    271.71    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.079;DB;DP=23;FS=3.039;HRun=9;HaplotypeScore=69.6964;IndelType=I;MQ=59.47;MQ0=0;MQRankSum=0.181;QD=11.81;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:11,11:23:99:311,0,128
14    96795997    rs17094019    G    C    941.66    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.233;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.46;MQ0=0;MQRankSum=-0.864;QD=12.07;ReadPosRankSum=-0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:42,36:78:99:972,0,1398
14    96797473    rs8012399    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
14    96797724    rs1822372    G    A    1486.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=H573;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96797713_96797974;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1520,114,0
14    96811843    rs10145015    A    G    174.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
14    96813703    rs4905483    A    T    490.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=27.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    1/1:0,17:18:39.13:523,39,0
14    96829290    rs12434329    G    A    301.66    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.15;DB;DP=38;Dels=0.0;FS=3.247;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.416;QD=7.94;ReadPosRankSum=-1.283;SNPEFF_AMINO_ACID_CHANGE=S8;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96829152_96830207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359933    GT:AD:DP:GQ:PL    0/1:22,16:38:99:332,0,667
14    96858667    rs3742473    A    G    118.54    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.055;QD=6.97;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267584    GT:AD:DP:GQ:PL    0/1:11,6:17:99:149,0,365
14    96864309    rs8019939    A    G    311.45    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.853;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.84;MQ0=0;MQRankSum=-0.792;QD=15.57;ReadPosRankSum=-1.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267584    GT:AD:DP:GQ:PL    0/1:7,13:20:99:341,0,229
14    96871104    rs2275554    G    A    542.51    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.225;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=15.5;ReadPosRankSum=-0.086;SNPEFF_AMINO_ACID_CHANGE=R102Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96871094_96871202;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267584    GT:AD:DP:GQ:PL    0/1:17,18:35:99:573,0,473
14    96916228    rs10444759    C    T    78.04    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.6161;MQ=57.66;MQ0=0;MQRankSum=0.393;QD=2.6;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267584    GT:AD:DP:GQ:PL    0/1:21,7:30:99:108,0,357
14    96922752    rs2369679    C    G    883.96    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.822;DB;DP=58;Dels=0.0;FS=9.058;HRun=0;HaplotypeScore=0.0;MQ=56.32;MQ0=0;MQRankSum=0.296;QD=15.24;ReadPosRankSum=-1.154;SNPEFF_AMINO_ACID_CHANGE=N389K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_96922684_96922812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267584    GT:AD:DP:GQ:PL    0/1:27,31:58:99:914,0,842
14    96954871    .    T    G    74.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267584    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:104,0,28
14    97299853    rs2145635    A    G    567.73    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.121;DB;DP=56;Dels=0.0;FS=1.064;HRun=0;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;MQRankSum=0.326;QD=10.14;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=A15;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_97299804_97299968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216639    GT:AD:DP:GQ:PL    0/1:34,22:56:99:598,0,988
14    97321689    rs2230532    C    T    583.40    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.83;DB;DP=48;Dels=0.0;FS=6.267;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=12.15;ReadPosRankSum=0.24;SNPEFF_AMINO_ACID_CHANGE=G235;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_97321561_97321693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216639    GT:AD:DP:GQ:PL    0/1:28,20:48:99:613,0,850
14    97323184    rs12892609    G    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555351    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:79,6,0
14    99182626    rs4905757    T    C    203.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.249;DB;DP=30;Dels=0.0;FS=1.484;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=6.78;ReadPosRankSum=-0.191;SNPEFF_AMINO_ACID_CHANGE=V33A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_99182454_99182727;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325812    GT:AD:DP:GQ:PL    0/1:18,12:30:99:233,0,554
14    99961830    rs2069492    T    C    2483.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.73;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553636    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2516,196,0
14    100002473    rs12882209    A    G    113.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555049    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:146,12,0
14    100119238    rs3825570    G    T    262.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:295,24,0
14    100123087    rs35951752    T    TG    174.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=52.3399;IndelType=I;MQ=23.83;MQ0=0;QD=13.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:4,9:5:15.05:216,15,0
14    100123117    .    AG    A    615.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.969;DP=34;FS=0.0;HRun=1;HaplotypeScore=714.9533;IndelType=D;MQ=26.15;MQ0=0;MQRankSum=1.319;QD=14.65;ReadPosRankSum=1.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:21,21:34:41.38:658,41,0
14    100123118    .    GA    G    562.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;DP=34;FS=0.0;HRun=5;HaplotypeScore=724.1863;IndelType=D;MQ=26.15;MQ0=0;MQRankSum=0.523;QD=13.4;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:31,11:34:76.22:605,76,0
14    100123122    rs56777391;rs57839380    AG    A    762.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=1;HaplotypeScore=830.5789;IndelType=D;MQ=26.74;MQ0=0;QD=16.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:27,20:39:96.30:805,96,0
14    100123125    .    A    AAG    1413.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.169;DP=50;FS=0.0;HRun=0;HaplotypeScore=1444.4244;IndelType=I;MQ=27.18;MQ0=0;MQRankSum=-0.675;QD=24.38;ReadPosRankSum=0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:42,15:50:52.47:1456,52,0
14    100123136    rs71464624    GA    G    229.25    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=4.914;DB;DP=55;FS=0.0;HRun=3;HaplotypeScore=868.1012;IndelType=D;MQ=27.33;MQ0=0;MQRankSum=0.298;QD=3.64;ReadPosRankSum=2.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    0/1:43,20:55:99:268,0,1157
14    100123177    rs59236290    G    A    79.93    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=8.6521;MQ=26.6;MQ0=0;MQRankSum=0.794;QD=1.63;ReadPosRankSum=-1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:1,48:49:12:112,12,0
14    100123181    .    G    A    84.91    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.6982;MQ=26.72;MQ0=0;MQRankSum=0.377;QD=1.81;ReadPosRankSum=-1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:2,45:47:12.02:117,12,0
14    100123185    .    G    A    84.89    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=27.52;MQ0=0;MQRankSum=1.111;QD=2.18;ReadPosRankSum=-0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:1,38:39:12.02:117,12,0
14    100123189    .    G    A    82.98    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=28.43;MQ0=0;MQRankSum=-1.733;QD=2.44;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:1,33:34:12.02:115,12,0
14    100123193    .    G    A    79.07    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=28.68;MQ0=0;MQRankSum=-0.347;QD=2.64;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:1,29:30:12.01:112,12,0
14    100123197    .    G    A    126.92    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=-1.828;QD=5.29;ReadPosRankSum=2.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:2,22:24:17.98:160,18,0
14    100123201    .    G    A    154.42    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=1.091;QD=5.72;ReadPosRankSum=1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:1,26:27:20.98:187,21,0
14    100123205    .    G    A    160.36    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.9181;MQ=29.0;MQ0=0;MQRankSum=0.0;QD=4.72;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:1,33:34:21:193,21,0
14    100123209    .    G    A    164.26    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.8932;MQ=29.0;MQ0=0;MQRankSum=-0.193;QD=4.56;ReadPosRankSum=0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:1,35:36:21:197,21,0
14    100123213    .    G    A    130.87    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.9019;MQ=29.0;MQ0=0;MQRankSum=-1.348;QD=3.54;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:2,35:37:18:164,18,0
14    100123217    .    G    A    159.46    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.917;MQ=29.67;MQ0=0;MQRankSum=-1.238;QD=3.8;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:1,41:42:21:192,21,0
14    100123221    .    G    A    157.52    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9717;MQ=29.13;MQ0=0;QD=3.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,51:51:21:190,21,0
14    100123225    .    G    A    154.54    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=29.12;MQ0=0;QD=2.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,55:55:20.99:187,21,0
14    100123229    rs147970548    G    A    221.45    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=33.19;MQ0=0;QD=3.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,70:70:29.94:254,30,0
14    100123232    rs61984401    G    A    223.56    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=35.83;MQ0=0;QD=2.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,77:77:29.95:257,30,0
14    100126416    rs2400763    T    C    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
14    100128985    rs10873508    T    G    84.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
14    100129071    rs11160535    A    G    230.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=17.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,13:13:29.95:263,30,0
14    100129072    rs75111612    T    G    232.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=16.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,14:14:29.95:266,30,0
14    100141689    rs7158073    T    C    32.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.23;SNPEFF_AMINO_ACID_CHANGE=V692A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100141428_100146906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HHIPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330710    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
14    100157967    rs754203    A    G    31.40    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=6.28;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP46A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261835    GT:AD:DP:GQ:PL    0/1:1,4:5:30.29:61,0,30
14    100158241    rs4900442    C    T    186.49    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=19;Dels=0.0;FS=6.419;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=9.82;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP46A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261835    GT:AD:DP:GQ:PL    0/1:11,8:19:99:216,0,363
14    100165673    rs3742376    C    T    810.70    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.94;DB;DP=58;Dels=0.0;FS=3.502;HRun=1;HaplotypeScore=2.6548;MQ=60.0;MQ0=0;MQRankSum=-0.216;QD=13.98;ReadPosRankSum=0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP46A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261835    GT:AD:DP:GQ:PL    0/1:32,26:58:99:841,0,1106
14    100166489    rs943880    G    C    45.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.248;QD=5.1;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP46A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261835    GT:AD:DP:GQ:PL    0/1:6,3:9:75.91:76,0,219
14    100172899    rs2273839    A    G    230.07    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=13.53;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP46A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261835    GT:AD:DP:GQ:PL    0/1:8,9:17:99:260,0,267
14    100174092    rs35688975    A    AT    220.66    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.505;DB;DP=33;FS=0.0;HRun=14;HaplotypeScore=251.619;IndelType=I;MQ=52.03;MQ0=0;MQRankSum=-0.794;QD=6.69;ReadPosRankSum=-0.938;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP46A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261835    GT:AD:DP:GQ:PL    0/1:17,16:33:12.46:260,0,12
14    100184589    rs7151522    A    G    192.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP46A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554611    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:226,18,0
14    100317376    rs72708401    G    A    403    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262233    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:436,33,0
14    100317472    rs4905905    G    A    233.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262233    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:266,21,0
14    100331655    rs12432209    G    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262233    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
14    100331876    rs11160553    T    C    1604.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_AMINO_ACID_CHANGE=P61;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100331851_100331983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327921    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1637,129,0
14    100344698    rs1191118    T    C    213.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262233    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
14    100363336    rs17652784    T    C    262.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262233    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:295,21,0
14    100377548    rs12435250    A    G    35.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554479    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
14    100380948    rs2250718    T    C    788.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.53;SNPEFF_AMINO_ACID_CHANGE=S544P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100380903_100381034;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327921    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:821,60,0
14    100384032    rs75719251    TTGTG    T    693.88    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=92.6673;IndelType=D;MQ=54.15;MQ0=0;MQRankSum=-0.434;QD=40.82;ReadPosRankSum=-0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554111    GT:AD:DP:GQ:PL    0/1:2,15:17:31.93:733,0,32
14    100387242    rs34263849    A    AT    1689.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=7;HaplotypeScore=118.8937;IndelType=I;MQ=60.17;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262233    GT:AD:DP:GQ:PL    1/1:8,48:55:99:1731,144,0
14    100404351    rs2295787    T    C    559.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262233    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:593,45,0
14    100406193    rs4900449    T    A    417.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262233    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:450,36,0
14    100563669    rs941895    G    A    199.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392920    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
14    100592959    rs726514    G    A    1981.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=37.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555706    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2014,153,0
14    100599164    rs941897    G    A    1141.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553875    GT:AD:DP:GQ:PL    1/1:0,34:34:93.24:1175,93,0
14    100602450    rs67380624    TCCCCCAGAGCCTC    T    737.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=125.6627;IndelType=D;MQ=43.99;MQ0=0;QD=73.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557384    GT:AD:DP:GQ:PL    1/1:2,8:10:24.08:780,24,0
14    100607360    rs1951486    T    C    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544450    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
14    100608274    rs4905933    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEGS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305631    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
14    100615665    rs4905936    T    C    563.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.29;SNPEFF_AMINO_ACID_CHANGE=T155;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100615305_100616047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEGS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305631    GT:AD:DP:GQ:PL    1/1:0,18:18:51.13:596,51,0
14    100740904    rs4905942    G    C    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262238    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
14    100759046    rs3825555    C    A    116.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=29.04;SNPEFF_AMINO_ACID_CHANGE=T162;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100757448_100759369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359232    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
14    100759738    rs3809409    A    C    287.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553359    GT:AD:DP:GQ:PL    1/1:0,13:13:30.05:321,30,0
14    100792126    rs35097172    C    T    190.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=27.18;SNPEFF_AMINO_ACID_CHANGE=G10;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100792125_100792168;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A47;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361529    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:223,18,0
14    100792220    rs7155877    C    T    128.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361529    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
14    100793431    rs1535464    G    A    579.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361529    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:612,45,0
14    100795338    rs8015259    G    C    501.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_AMINO_ACID_CHANGE=A201;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100795063_100795381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A47;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361529    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:535,45,0
14    100801423    rs2234532    T    C    639.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361529    GT:AD:DP:GQ:PL    1/1:0,22:22:60.12:672,60,0
14    100803682    rs4905951    T    C    476.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=26.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344102    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:509,45,0
14    100803742    rs11622361    C    G    112.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344102    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
14    100847523    rs2181170    T    C    1257.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.81;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=W88R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100847247_100848083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335290    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1290,102,0
14    100847707    rs2273800    A    G    2591.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=H149R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100847247_100848083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335290    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2624,202,0
14    100847930    rs3742387    A    G    1480.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_AMINO_ACID_CHANGE=P223;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100847247_100848083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335290    GT:AD:DP:GQ:PL    1/1:0,40:41:99:1513,117,0
14    100934602    rs4905966    C    T    502.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335290    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:535,39,0
14    100947641    rs8019212    T    C    1764.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DB;DP=57;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.94;MQ0=3;MQRankSum=0.49;QD=30.96;ReadPosRankSum=0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335290    GT:AD:DP:GQ:PL    1/1:4,53:57:99:1798,144,0
14    100947776    rs34968968    C    CT    255.69    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.324;DB;DP=25;FS=2.445;HRun=15;HaplotypeScore=160.9998;IndelType=I;MQ=52.3;MQ0=1;MQRankSum=1.342;QD=9.47;ReadPosRankSum=0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335290    GT:AD:DP:GQ:PL    0/1:12,15:25:30.84:295,0,31
14    100996312    rs13065    T    C    1097.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_AMINO_ACID_CHANGE=Y266;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_100996157_100996627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542471    GT:AD:DP:GQ:PL    1/1:0,39:39:87.27:1131,87,0
14    101005215    rs12893951    T    C    186.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.31;SNPEFF_AMINO_ACID_CHANGE=A227;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_101003490_101005652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556751    GT:AD:DP:GQ:PL    1/1:0,8:8:18.03:219,18,0
14    101005236    rs12892571    A    G    236.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_AMINO_ACID_CHANGE=H220;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_101003490_101005652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556751    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:269,21,0
14    101007072    rs6575788    C    G    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554274    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    101011209    rs4074037    A    G    191.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554747    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:224,18,0
14    101012728    rs183903487    C    G    46.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355173    GT:AD:DP:GQ:PL    1/1:0,3:3:8.99:79,9,0
14    101012762    .    C    G    89.71    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=17.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355173    GT:AD:DP:GQ:PL    1/1:1,4:5:12.02:122,12,0
14    101012779    .    C    G    308.84    PASS    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355173    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:342,30,0
14    101012796    rs187835186    C    G    273.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.45;MQ0=0;QD=21.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355173    GT:AD:DP:GQ:PL    1/1:0,13:13:30.03:306,30,0
14    101012813    rs71421237    C    G    463.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.32;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEGAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355173    GT:AD:DP:GQ:PL    1/1:0,16:16:45.09:496,45,0
14    101138605    rs11849923    C    T    990.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-566J3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553367    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1023,81,0
14    101138673    rs11846102    T    C    157.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-566J3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553367    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:190,15,0
14    101194561    rs10139403    A    G    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331224    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
14    101194944    rs67893184    T    G    158.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=19.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331224    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:192,15,0
14    101198417    rs6575799    A    G    1229.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=R101G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_101198379_101198520;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331224    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1263,108,0
14    101198609    rs77235285    C    T    473.97    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=4.407;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.066;QD=15.8;ReadPosRankSum=-0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392848    GT:AD:DP:GQ:PL    0/1:14,16:30:99:504,0,341
14    101200445    rs17577779    T    C    251.10    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=19.32;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392848    GT:AD:DP:GQ:PL    0/1:4,9:13:99:281,0,125
14    101200645    rs1802710    T    C    406.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.446;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8188;MQ=60.0;MQ0=0;MQRankSum=1.35;QD=7.97;ReadPosRankSum=0.675;SNPEFF_AMINO_ACID_CHANGE=I188;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_101200486_101200765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331224    GT:AD:DP:GQ:PL    0/1:30,18:51:99:437,0,790
14    101297454    rs35431412    T    C    1349.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.353;DB;DP=96;Dels=0.0;FS=3.889;HRun=1;HaplotypeScore=4.5816;MQ=59.52;MQ0=0;MQRankSum=0.316;QD=14.06;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MEG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455286    GT:AD:DP:GQ:PL    0/1:48,48:96:99:1379,0,1511
14    101297515    rs10147988    A    G    1196.07    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=105;Dels=0.0;FS=2.651;HRun=2;HaplotypeScore=1.5678;MQ=59.56;MQ0=0;MQRankSum=1.987;QD=11.39;ReadPosRankSum=-0.255;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MEG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455286    GT:AD:DP:GQ:PL    0/1:56,47:105:99:1226,0,1610
14    101299000    rs3742390    C    T    236.46    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=1.68;QD=6.76;ReadPosRankSum=-1.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MEG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455286    GT:AD:DP:GQ:PL    0/1:26,9:35:99:266,0,702
14    101299065    rs3742391    T    C    319.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MEG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455286    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:352,27,0
14    101300567    rs2400941    C    G    1410.75    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.621;DB;DP=100;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=1.8835;MQ=59.31;MQ0=0;MQRankSum=1.564;QD=14.11;ReadPosRankSum=0.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MEG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452120    GT:AD:DP:GQ:PL    0/1:52,48:100:99:1441,0,1640
14    101302463    rs55996894    G    C    143.56    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=23.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MEG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452120    GT:AD:DP:GQ:PL    0/1:1,5:6:17.20:174,0,17
14    101311729    rs56363527    C    T    120.24    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.05;ReadPosRankSum=-0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=MEG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398461    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:150,0,28
14    101348584    rs11623267    C    G    328.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_AMINO_ACID_CHANGE=E848Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_101346992_101351184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534062    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:361,27,0
14    101349017    rs6575805    A    G    1838.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=F703;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_101346992_101351184;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534062    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1872,147,0
14    101351283    rs41286564    C    G    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534062    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
14    101418192    rs11309521    TG    T    1706.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=3;HaplotypeScore=124.9582;IndelType=D;MQ=59.52;MQ0=0;QD=35.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL132709.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555354    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1749,141,0
14    101421903    rs72700527    G    A    282.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL132709.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427085    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
14    101489703    rs111906529    T    C    640.78    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.651;DB;DP=56;Dels=0.0;FS=2.347;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.863;QD=11.44;ReadPosRankSum=-3.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR379;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362218    GT:AD:DP:GQ:PL    0/1:30,26:56:99:671,0,900
14    101490412    rs12435862    A    G    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR299;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385016    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
14    101492224    rs7141987    T    C    317.66    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.296;DB;DP=33;Dels=0.0;FS=1.385;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.56;QD=9.63;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1197;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408818    GT:AD:DP:GQ:PL    0/1:18,15:33:99:348,0,621
14    101496145    rs9324030    A    G    439.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1197;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408818    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:472,36,0
14    101496574    rs12435041    C    T    146.34    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=3.43;DB;DP=27;Dels=0.0;FS=5.545;HRun=2;HaplotypeScore=0.5784;MQ=59.14;MQ0=0;MQRankSum=-0.419;QD=5.42;ReadPosRankSum=-1.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1193;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408109    GT:AD:DP:GQ:PL    0/1:16,11:27:99:176,0,443
14    101496579    rs12435042    C    G    73.36    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=24;Dels=0.0;FS=3.882;HRun=4;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;MQRankSum=-1.259;QD=3.06;ReadPosRankSum=-1.786;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1193;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408109    GT:AD:DP:GQ:PL    0/1:14,10:24:99:103,0,454
14    101496705    rs12432187    T    G    39.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=9.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1193;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408109    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:70,0,33
14    101498483    rs8018238    C    T    67.14    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=52.21;MQ0=0;MQRankSum=-1.532;QD=4.48;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1193;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408109    GT:AD:DP:GQ:PL    0/1:8,7:15:97.13:97,0,219
14    101499937    rs8004162    A    G    176.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1193;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408109    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:209,18,0
14    101505899    rs12883533    G    A    175.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=29.25;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1185-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408598    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
14    101507727    rs12894467    C    T    3048.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR376C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459389    GT:AD:DP:GQ:PL    1/1:0,82:82:99:3081,226,0
14    101509225    rs75777456    C    G    94.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.361;QD=10.46;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401138    GT:AD:DP:GQ:PL    0/1:5,4:9:99:124,0,108
14    101509274    rs112829040    G    A    267.83    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=12;Dels=0.0;FS=4.616;HRun=2;HaplotypeScore=0.9998;MQ=58.05;MQ0=0;MQRankSum=0.589;QD=22.32;ReadPosRankSum=1.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401138    GT:AD:DP:GQ:PL    0/1:3,9:12:32.96:298,0,33
14    101513795    rs72700576    C    T    101.01    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=8.42;ReadPosRankSum=1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1185-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408598    GT:AD:DP:GQ:PL    0/1:7,5:12:99:131,0,212
14    101521108    .    C    T    164.31    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DP=18;Dels=0.0;FS=1.958;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=9.13;ReadPosRankSum=-0.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR134;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385258    GT:AD:DP:GQ:PL    0/1:11,7:18:99:194,0,320
14    101531854    rs61992671    A    G    691.66    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=2.719;DB;DP=44;Dels=0.0;FS=4.643;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=15.72;ReadPosRankSum=0.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR377;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362145    GT:AD:DP:GQ:PL    0/1:19,25:44:99:722,0,491
14    102349540    rs1741125    C    T    98.23    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.134;QD=7.56;ReadPosRankSum=-1.468;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553730    GT:AD:DP:GQ:PL    0/1:9,4:13:99:128,0,298
14    102349542    rs1741126    G    T    90.93    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.599;QD=6.99;ReadPosRankSum=-1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553730    GT:AD:DP:GQ:PL    0/1:9,4:13:99:121,0,225
14    102349907    rs2720207    A    G    1042.03    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=66;Dels=0.0;FS=3.556;HRun=0;HaplotypeScore=0.0;MQ=58.65;MQ0=0;MQRankSum=0.448;QD=15.79;ReadPosRankSum=2.613;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553730    GT:AD:DP:GQ:PL    0/1:31,34:66:99:1072,0,890
14    102356475    rs1904298    C    T    209.64    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=19.06;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328724    GT:AD:DP:GQ:PL    0/1:4,7:11:99:240,0,124
14    102359489    rs2720219    A    G    241.45    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=21;Dels=0.0;FS=2.318;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=11.5;ReadPosRankSum=-0.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556805    GT:AD:DP:GQ:PL    0/1:11,10:21:99:271,0,384
14    102360745    rs7142002    T    C    86.45    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=7.86;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556805    GT:AD:DP:GQ:PL    0/1:7,4:11:99:116,0,260
14    102391181    rs59784377    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328724    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    102391212    rs58553858    C    A    173.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328724    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
14    102391577    rs3742424    G    C    1465.57    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DB;DP=120;Dels=0.0;FS=5.737;HRun=2;HaplotypeScore=0.7887;MQ=59.42;MQ0=0;MQRankSum=-1.694;QD=12.21;ReadPosRankSum=0.348;SNPEFF_AMINO_ACID_CHANGE=A476P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102391478_102393856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350249    GT:AD:DP:GQ:PL    0/1:66,54:120:99:1496,0,1860
14    102445607    rs2273438    T    C    667.90    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.197;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.854;QD=16.29;ReadPosRankSum=1.563;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:18,23:41:99:698,0,629
14    102449188    rs11851402    G    A    64.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:1,3:4:20.48:94,0,20
14    102449338    rs11450443    C    CT    990.40    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.541;DB;DP=63;FS=0.0;HRun=3;HaplotypeScore=159.7372;IndelType=I;MQ=59.98;MQ0=0;MQRankSum=0.178;QD=15.72;ReadPosRankSum=-0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:33,30:63:99:1029,0,933
14    102451983    rs2983422    G    A    614.14    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=3.841;DB;DP=48;Dels=0.0;FS=6.732;HRun=0;HaplotypeScore=2.2424;MQ=59.52;MQ0=0;MQRankSum=0.57;QD=12.79;ReadPosRankSum=0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:28,20:48:99:644,0,715
14    102454115    rs12891749    A    G    230.34    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=25.59;ReadPosRankSum=1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:2,7:9:50.80:260,0,51
14    102454933    rs4906172    C    A    117.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:2,4:6:65.59:148,0,66
14    102457817    rs2720205    T    A    239.92    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.373;QD=11.42;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:11,10:21:99:270,0,322
14    102461209    rs4900529    A    G    486.09    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.066;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.329;QD=16.2;ReadPosRankSum=-0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:14,16:30:99:516,0,445
14    102463407    rs12893215    A    G    442.85    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.97;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.9;MQ0=0;MQRankSum=-0.524;QD=13.03;ReadPosRankSum=-1.103;SNPEFF_AMINO_ACID_CHANGE=Q1200;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102463372_102463611;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:18,16:34:99:473,0,605
14    102466178    rs8014930    A    G    66.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:98,9,0
14    102466253    rs8015117    C    T    194.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.998;QD=12.13;ReadPosRankSum=-1.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:8,8:16:99:224,0,283
14    102466430    rs34690489    G    A    560.11    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.189;DB;DP=42;Dels=0.0;FS=1.204;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=13.34;ReadPosRankSum=0.894;SNPEFF_AMINO_ACID_CHANGE=A1303;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102466326_102466481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:22,20:42:99:590,0,600
14    102467847    rs2251644    A    G    583.94    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.909;DB;DP=43;Dels=0.0;FS=2.878;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.491;QD=13.58;ReadPosRankSum=-2.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:20,23:43:99:614,0,681
14    102470762    rs2749896    G    C    43.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.98;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:74,0,70
14    102483881    rs35640591    C    CAGCT    1398.38    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.413;DB;DP=56;FS=16.488;HRun=0;HaplotypeScore=225.0995;IndelType=I;MQ=57.03;MQ0=0;MQRankSum=-0.373;QD=24.97;ReadPosRankSum=-1.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:37,18:56:99:1437,0,1579
14    102485051    rs34216239    AT    A    318.06    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=13;FS=0.0;HRun=4;HaplotypeScore=30.9973;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.493;QD=24.47;ReadPosRankSum=0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:2,11:13:44.91:357,0,45
14    102486042    rs3742426    G    A    71.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.19;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,116
14    102486200    rs2180510    G    A    949.17    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=3.988;DB;DP=56;Dels=0.0;FS=2.631;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=16.95;ReadPosRankSum=-0.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:23,33:56:99:979,0,658
14    102493761    rs8010870    A    G    1156.63    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.76;DB;DP=67;Dels=0.0;FS=5.048;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-1.855;QD=17.26;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=L2976;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102493720_102493881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:31,36:67:99:1187,0,987
14    102494586    rs4906173    T    C    58.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.38;QD=9.78;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555204    GT:AD:DP:GQ:PL    0/1:2,4:6:68.95:89,0,69
14    102496352    rs2253998    C    A    217.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.971;DB;DP=18;Dels=0.0;FS=4.752;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=12.08;ReadPosRankSum=0.706;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554854    GT:AD:DP:GQ:PL    0/1:9,9:18:99:247,0,296
14    102496394    rs60087609    AGT    A    301.86    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=125.1363;IndelType=D;MQ=60.41;MQ0=0;MQRankSum=-0.619;QD=13.12;ReadPosRankSum=1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554854    GT:AD:DP:GQ:PL    0/1:12,11:23:99:341,0,295
14    102506308    rs8013679    A    G    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555800    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    102507065    rs17541540    G    C    224.93    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=14;Dels=0.0;FS=3.256;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=16.07;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555800    GT:AD:DP:GQ:PL    0/1:6,8:14:99:255,0,215
14    102507751    rs45444691    C    T    124.81    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.195;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.177;QD=4.8;ReadPosRankSum=-0.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555800    GT:AD:DP:GQ:PL    0/1:19,7:26:99:155,0,716
14    102510428    rs1190606    A    G    121.74    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=2.817;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=10.15;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555102    GT:AD:DP:GQ:PL    0/1:7,5:12:99:152,0,250
14    102510874    rs2273440    G    A    533.73    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.322;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.16;MQ0=0;MQRankSum=2.152;QD=16.17;ReadPosRankSum=-0.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555102    GT:AD:DP:GQ:PL    0/1:16,17:33:99:564,0,420
14    102514227    rs13749    T    C    746.28    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.943;DB;DP=38;Dels=0.0;FS=1.323;HRun=1;HaplotypeScore=1.6006;MQ=59.01;MQ0=0;MQRankSum=0.589;QD=19.64;ReadPosRankSum=0.239;SNPEFF_AMINO_ACID_CHANGE=T4360;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102514154_102514365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360184    GT:AD:DP:GQ:PL    0/1:13,25:38:99:776,0,425
14    102514713    rs941792    G    A    154.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=19.33;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555102    GT:AD:DP:GQ:PL    0/1:3,5:8:82.54:185,0,83
14    102515015    rs1004903    G    A    417.34    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.063;DB;DP=21;Dels=0.0;FS=5.518;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.051;QD=19.87;ReadPosRankSum=-1.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555102    GT:AD:DP:GQ:PL    0/1:6,15:21:99:447,0,197
14    102515171    rs1004904    A    G    67.78    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.94;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNC1H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556229    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:98,0,30
14    102548224    rs2298877    T    C    582.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441629    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:615,48,0
14    102548384    rs6575895    C    T    766.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=38.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441629    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:799,60,0
14    102549231    rs10873530    C    T    647.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553585    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:681,51,0
14    102549262    rs10782495    A    G    1092.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=28.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553585    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1125,99,0
14    102549839    rs7155973    A    G    2006.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553585    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2039,150,0
14    102550569    rs3742429    G    A    271.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553585    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:305,24,0
14    102550803    rs4947    G    A    2276.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=35.02;SNPEFF_AMINO_ACID_CHANGE=N181;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102550736_102550901;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441629    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2309,172,0
14    102551795    rs35308930    T    TTAA    1391.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=69.4089;IndelType=I;MQ=55.49;MQ0=0;QD=57.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556554    GT:AD:DP:GQ:PL    1/1:2,22:24:66.23:1434,66,0
14    102552773    rs8004640    A    G    1372.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216281    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1405,108,0
14    102552775    rs3736807    T    G    1411.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=36.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216281    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1445,108,0
14    102568296    rs10873531    G    A    2312.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=35.58;SNPEFF_AMINO_ACID_CHANGE=T94;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102568212_102568422;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334701    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2346,175,0
14    102568367    rs8005905    T    A    2710.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=35.2;SNPEFF_AMINO_ACID_CHANGE=M71L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102568212_102568422;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSP90AA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334701    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2743,205,0
14    102808330    rs12590618    C    T    1312.68    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=2.434;DB;DP=74;Dels=0.0;FS=3.253;HRun=1;HaplotypeScore=0.6651;MQ=58.74;MQ0=0;MQRankSum=1.32;QD=17.74;ReadPosRankSum=-0.138;SNPEFF_AMINO_ACID_CHANGE=V284;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102807660_102808704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF839;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420933    GT:AD:DP:GQ:PL    0/1:31,43:74:99:1343,0,816
14    102808655    rs11704    G    C    377.33    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=20.96;ReadPosRankSum=-0.158;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF839;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262236    GT:AD:DP:GQ:PL    0/1:5,12:18:99:407,0,147
14    102814945    rs7012    G    A    216.82    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=15.49;ReadPosRankSum=0.267;SNPEFF_AMINO_ACID_CHANGE=S196;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102814619_102815096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CINP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216756    GT:AD:DP:GQ:PL    0/1:5,9:14:99:247,0,134
14    102873886    rs60215817    A    G    311.63    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.437;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.761;QD=22.26;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359520    GT:AD:DP:GQ:PL    0/1:4,10:14:90.99:342,0,91
14    102881323    rs9324048    T    G    31.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.42;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359520    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:61,0,31
14    102894593    rs1309353    G    A    301.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=46.48;MQ0=0;QD=13.1;SNPEFF_AMINO_ACID_CHANGE=V320I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102894587_102894719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359520    GT:AD:DP:GQ:PL    1/1:0,19:23:27.06:334,27,0
14    102897958    rs1190542    C    T    117.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=10.64;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359520    GT:AD:DP:GQ:PL    0/1:6,5:11:99:147,0,214
14    102900956    rs118141823    C    T    247.60    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.456;QD=12.38;ReadPosRankSum=0.532;SNPEFF_AMINO_ACID_CHANGE=P601L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_102900572_102901548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359520    GT:AD:DP:GQ:PL    0/1:11,9:20:99:278,0,342
14    102964654    rs2403058    A    G    125.25    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=15.66;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TECPR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380088    GT:AD:DP:GQ:PL    0/1:3,5:8:99:155,0,102
14    103177420    rs3783383    G    C    394.73    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.084;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.267;QD=21.93;ReadPosRankSum=-1.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262241    GT:AD:DP:GQ:PL    0/1:5,13:18:99:425,0,158
14    103338324    rs2295402    T    A    514.27    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=39;Dels=0.0;FS=10.671;HRun=2;HaplotypeScore=0.9987;MQ=59.41;MQ0=0;MQRankSum=0.585;QD=13.19;ReadPosRankSum=0.842;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347662    GT:AD:DP:GQ:PL    0/1:16,23:39:99:544,0,544
14    103341865    rs113276391    G    GT    103.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;FS=0.0;HRun=12;HaplotypeScore=32.504;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=8.59;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347662    GT:AD:DP:GQ:PL    0/1:6,6:12:76.40:142,0,76
14    103342049    rs1131877    T    C    362.86    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.41;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.31;QD=9.55;ReadPosRankSum=-0.163;SNPEFF_AMINO_ACID_CHANGE=M129T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103341961_103342065;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347662    GT:AD:DP:GQ:PL    0/1:22,16:38:99:393,0,658
14    103357603    rs2273393    G    T    188.47    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.067;QD=20.94;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347662    GT:AD:DP:GQ:PL    0/1:2,6:9:44.55:218,0,45
14    103390383    rs1190226    T    C    484.99    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.304;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.236;QD=15.64;ReadPosRankSum=-0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299155    GT:AD:DP:GQ:PL    0/1:12,19:31:99:515,0,347
14    103397055    rs1190233    G    C    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.32;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361246    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,68
14    103406368    rs2269317    C    T    431.23    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=34;Dels=0.0;FS=5.752;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=1.5;QD=12.68;ReadPosRankSum=0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541396    GT:AD:DP:GQ:PL    0/1:18,15:34:99:461,0,532
14    103413941    rs8007924    T    C    203.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361246    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
14    103414179    rs12886225    G    A    244.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=33;Dels=0.0;FS=2.755;HRun=0;HaplotypeScore=1.9399;MQ=57.15;MQ0=0;MQRankSum=1.17;QD=7.42;ReadPosRankSum=0.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361246    GT:AD:DP:GQ:PL    0/1:22,11:33:99:275,0,606
14    103416096    rs12590961    G    A    917.01    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.952;DB;DP=51;Dels=0.0;FS=10.099;HRun=0;HaplotypeScore=0.9989;MQ=59.63;MQ0=0;MQRankSum=0.45;QD=17.98;ReadPosRankSum=0.526;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361246    GT:AD:DP:GQ:PL    0/1:21,30:51:99:947,0,588
14    103434530    rs2093414    T    A    379.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.07;MQ0=0;QD=22.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361246    GT:AD:DP:GQ:PL    1/1:0,17:17:39.09:413,39,0
14    103440282    rs1018550    G    T    1441.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361246    GT:AD:DP:GQ:PL    1/1:0,42:43:99:1475,108,0
14    103440473    rs8009219    G    C    296.52    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=19;Dels=0.0;FS=2.527;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=15.61;ReadPosRankSum=0.844;SNPEFF_AMINO_ACID_CHANGE=L507;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103440353_103440486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361246    GT:AD:DP:GQ:PL    0/1:8,11:19:99:327,0,264
14    103449773    rs2269322    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42BPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361246    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
14    103576415    rs729184    A    G    133.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.22;SNPEFF_AMINO_ACID_CHANGE=Q675R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103576368_103576892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3L4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380069    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:166,15,0
14    103593950    rs1132339    C    G    164.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=27.42;SNPEFF_AMINO_ACID_CHANGE=Q282E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103593342_103593966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333007    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
14    103595997    rs2234130    G    C    401.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333007    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:435,33,0
14    103596488    rs2234131    G    A    366.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=26.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333007    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:400,30,0
14    103596609    rs2234133    T    A    84.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333007    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
14    103597565    rs749206    G    A    603.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333007    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:636,48,0
14    103599311    rs1887940    G    A    139.39    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333007    GT:AD:DP:GQ:PL    0/1:1,5:6:24.18:169,0,24
14    103599597    rs8176367    G    A    146.46    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.27;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333007    GT:AD:DP:GQ:PL    0/1:4,5:9:99:176,0,128
14    103599938    rs2234143    C    T    620.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333007    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:653,48,0
14    103806850    rs1804617    G    A    2062.93    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=141;DS;Dels=0.0;FS=1.79;HRun=1;HaplotypeScore=2.8558;MQ=59.67;MQ0=0;MQRankSum=0.487;QD=14.63;ReadPosRankSum=-1.644;SNPEFF_AMINO_ACID_CHANGE=E386;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103806764_103806898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216554    GT:AD:DP:GQ:PL    0/1:63,78:141:99:2093,0,2003
14    103840904    rs11629297    C    G    2728.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=57.44;MQ0=0;QD=29.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-600F24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485258    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2762,229,0
14    103841018    rs6575979    A    G    2591.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=33.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-600F24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485258    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2624,208,0
14    103871723    rs2065020    T    C    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
14    103918029    rs2273703    C    G    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.34;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,107
14    103918182    rs2273702    G    C    1062.11    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=62;Dels=0.0;FS=1.556;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.181;QD=17.13;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    0/1:30,32:62:99:1092,0,942
14    103923414    rs2273700    A    G    207.30    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.176;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.164;QD=12.96;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    0/1:7,9:16:99:237,0,243
14    103923475    rs2273699    A    G    640.33    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=1.842;DB;DP=39;Dels=0.0;FS=1.481;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.385;QD=16.42;ReadPosRankSum=0.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    0/1:16,23:39:99:670,0,472
14    103928657    rs4906326    T    A    356.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:390,30,0
14    103931879    rs1116095    A    G    417.76    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=2.088;DB;DP=47;Dels=0.0;FS=3.307;HRun=1;HaplotypeScore=1.5678;MQ=60.0;MQ0=0;MQRankSum=0.605;QD=8.89;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    0/1:32,15:47:99:448,0,1024
14    103932888    rs1951393    C    T    190.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:224,18,0
14    103933341    rs146120511    CA    C    35.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=20;HaplotypeScore=94.7358;IndelType=D;MQ=57.87;MQ0=0;QD=3.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    1/1:3,6:11:18.09:77,18,0
14    103933556    rs8010247    A    G    440.81    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=3.114;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=-0.492;QD=13.36;ReadPosRankSum=-2.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    0/1:19,14:33:99:471,0,542
14    103934488    rs10137161    T    C    1555.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;QD=29.91;SNPEFF_AMINO_ACID_CHANGE=F331S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103934370_103934523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440884    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1588,126,0
14    103946636    rs8014010    A    G    1322.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216288    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1356,102,0
14    103986255    rs1803283    C    T    555.09    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=34;Dels=0.0;FS=3.155;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.006;QD=16.33;ReadPosRankSum=-0.902;SNPEFF_AMINO_ACID_CHANGE=E162;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103986199_103986379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000553610    GT:AD:DP:GQ:PL    0/1:15,19:34:99:585,0,456
14    103988180    rs1136165    G    T    33.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.322;QD=3.37;ReadPosRankSum=-0.322;SNPEFF_AMINO_ACID_CHANGE=R118S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103988178_103988195;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428256    GT:AD:DP:GQ:PL    0/1:6,4:10:63.68:64,0,142
14    103996396    rs2765037    G    A    962.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=33.2;SNPEFF_AMINO_ACID_CHANGE=A27;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_103996287_103996646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT61A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299201    GT:AD:DP:GQ:PL    1/1:0,29:29:75.22:996,75,0
14    103996733    rs2756138    C    G    257.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT61A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299201    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
14    104000802    rs36121325    AG    A    211.63    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=43.5627;IndelType=D;MQ=59.13;MQ0=0;MQRankSum=-0.627;QD=15.12;ReadPosRankSum=-2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT61A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299201    GT:AD:DP:GQ:PL    0/1:6,8:14:99:251,0,217
14    104027557    rs11625397    C    T    801.16    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=2.871;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.384;QD=19.54;ReadPosRankSum=2.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299204    GT:AD:DP:GQ:PL    0/1:17,24:41:99:831,0,522
14    104029378    rs2274268    C    G    57.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=11.4;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=P14A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104029331_104029461;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-73M18.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247618    GT:AD:DP:GQ:PL    0/1:2,3:5:68.95:87,0,69
14    104129352    rs7150141    G    A    30.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.03;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246489    GT:AD:DP:GQ:PL    0/1:3,2:5:60.15:60,0,109
14    104136469    rs80093988    CT    C    904.22    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=5.601;DB;DP=62;FS=1.212;HRun=2;HaplotypeScore=169.4624;IndelType=D;MQ=59.25;MQ0=0;MQRankSum=-0.198;QD=14.58;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246489    GT:AD:DP:GQ:PL    0/1:33,29:62:99:943,0,1275
14    104139570    rs11160757    G    T    331.44    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.277;DB;DP=32;Dels=0.0;FS=6.023;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.448;QD=10.36;ReadPosRankSum=-0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246489    GT:AD:DP:GQ:PL    0/1:20,12:32:99:361,0,709
14    104143928    rs4906357    A    C    327.98    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=19.29;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246489    GT:AD:DP:GQ:PL    0/1:6,11:17:99:358,0,199
14    104145531    rs8003289    G    A    116.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=14.57;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246489    GT:AD:DP:GQ:PL    0/1:2,6:8:60.04:147,0,60
14    104165753    rs861539    G    A    314.11    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.888;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.489;QD=17.45;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=T241M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104165701_104165913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352127    GT:AD:DP:GQ:PL    0/1:8,10:18:99:344,0,217
14    104167075    rs861537    C    T    453.25    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=26;Dels=0.0;FS=4.06;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.317;QD=17.43;ReadPosRankSum=-0.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553807    GT:AD:DP:GQ:PL    0/1:10,16:26:99:483,0,313
14    104194196    rs1535100    C    G    976.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_AMINO_ACID_CHANGE=L101;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104194083_104194251;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216602    GT:AD:DP:GQ:PL    1/1:0,31:31:75.23:1010,75,0
14    104194278    rs1535099    C    T    374.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFYVE21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216602    GT:AD:DP:GQ:PL    1/1:0,15:15:36.08:407,36,0
14    104378852    rs8095    G    A    392.97    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.669;QD=17.09;ReadPosRankSum=-0.668;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553449    GT:AD:DP:GQ:PL    0/1:9,14:23:99:423,0,269
14    104381502    rs1053419    T    C    691.75    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.874;DB;DP=66;Dels=0.0;FS=3.477;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.122;QD=10.48;ReadPosRankSum=1.161;SNPEFF_AMINO_ACID_CHANGE=I26V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104381403_104381526;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414262    GT:AD:DP:GQ:PL    0/1:39,27:66:99:722,0,1089
14    104381687    rs11850704    A    G    37.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286953    GT:AD:DP:GQ:PL    0/1:2,2:4:63.86:68,0,64
14    104394835    rs9324065    T    C    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554880    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
14    104394850    rs9324066    C    T    123.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=L2;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104394817_104395061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
14    104429453    rs6576013    A    G    1144.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=28.61;SNPEFF_AMINO_ACID_CHANGE=T120;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104429416_104429513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,40:40:90.28:1178,90,0
14    104436931    rs11851097    C    T    532.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=25.37;SNPEFF_AMINO_ACID_CHANGE=L273;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104436878_104436958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,21:21:42.14:566,42,0
14    104441925    rs10147923    C    T    1193    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1226,90,0
14    104452405    rs10143030    C    G    396.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:430,33,0
14    104452640    rs10143389    G    A    3997.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.144;DB;DP=114;Dels=0.0;FS=3.771;HRun=0;HaplotypeScore=0.9999;MQ=59.84;MQ0=0;MQRankSum=0.68;QD=35.07;ReadPosRankSum=-1.361;SNPEFF_AMINO_ACID_CHANGE=L366;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104452554_104452657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:1,112:114:99:3998,252,0
14    104460436    rs76188495    G    A    54.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.73;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    0/1:4,3:7:84.10:84,0,119
14    104465037    rs10133836    T    C    6119.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=186;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6018;MQ=58.01;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=A485;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104464961_104465065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,186:186:99:6120,473,0
14    104465223    rs45487593    G    C    185.21    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.797;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=13.23;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    0/1:6,8:14:99:215,0,200
14    104470686    rs28391043    G    A    296.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.96;MQ0=0;QD=26.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,11:11:27.06:330,27,0
14    104470763    rs2368994    A    G    128.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.52;MQ0=0;QD=25.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
14    104471857    rs12147828    C    T    775.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.3;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=32.32;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:1,23:24:33.94:809,34,0
14    104471965    rs12147936    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
14    104473253    rs4900607    A    G    929.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:963,69,0
14    104473744    rs12100528    G    A    206.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466378    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
14    104481016    rs7150795    G    A    4033.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.36;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,109:109:99:4034,301,0
14    104481083    rs11160779    T    C    4978.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1222;MQ=59.53;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=L710;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104481062_104481178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,145:145:99:4979,364,0
14    104481200    rs138399618    A    AT    3657.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;FS=0.0;HRun=8;HaplotypeScore=251.152;IndelType=I;MQ=60.15;MQ0=0;QD=31.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:8,107:115:99:3657,319,0
14    104488829    rs118168613    C    T    113.28    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=14.16;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    0/1:3,5:8:84.85:143,0,85
14    104491086    rs71863477    TACACACACACAC    T    2396.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=0;HaplotypeScore=626.5968;IndelType=D;MQ=44.56;MQ0=0;QD=40.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:33,25:59:72.23:2439,72,0
14    104497543    rs10135507    C    T    2255.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=L1127;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104497445_104497600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409874    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2288,166,0
14    104498472    rs4906405    G    A    218.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
14    104498584    rs8021210    T    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
14    104500427    rs10150865    A    G    3037.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.74;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339063    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3071,229,0
14    104552382    rs1770988    A    G    81.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
14    104559552    rs941951    G    C    160.81    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.572;QD=20.1;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455920    GT:AD:DP:GQ:PL    0/1:2,6:8:56.59:191,0,57
14    104559623    rs941952    T    C    407.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=28;Dels=0.0;FS=7.346;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.209;QD=14.57;ReadPosRankSum=-0.487;SNPEFF_AMINO_ACID_CHANGE=L24P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104558970_104559939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:12,16:28:99:438,0,392
14    104559852    rs941953    T    C    656.16    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=1.137;DB;DP=74;Dels=0.0;FS=0.913;HRun=1;HaplotypeScore=1.9916;MQ=57.46;MQ0=0;MQRankSum=-0.838;QD=8.87;ReadPosRankSum=0.057;SNPEFF_AMINO_ACID_CHANGE=I100;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104558970_104559939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:43,30:74:99:686,0,1300
14    104559919    rs1770984    T    C    282.98    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.345;DB;DP=63;Dels=0.0;FS=18.92;HRun=0;HaplotypeScore=0.8941;MQ=57.39;MQ0=0;MQRankSum=-1.208;QD=4.49;ReadPosRankSum=-1.445;SNPEFF_AMINO_ACID_CHANGE=C123R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104558970_104559939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:47,16:63:99:313,0,1589
14    104559922    rs1744284    C    G    240.76    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.592;DB;DP=59;Dels=0.0;FS=10.586;HRun=0;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=-1.185;QD=4.08;ReadPosRankSum=-1.399;SNPEFF_AMINO_ACID_CHANGE=L124V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104558970_104559939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:45,14:59:99:271,0,1484
14    104559959    rs72094813    CTGGGTGGGGCTGTGGTGTGTGGGTGGGGCTGAGGTGTG    C    1088.41    PASS    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=1032.9039;IndelType=D;MQ=55.61;MQ0=0;MQRankSum=-2.646;QD=29.42;ReadPosRankSum=0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:29,8:37:99:1127,0,2410
14    104561712    rs72714947    G    A    143.59    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=15.95;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,127
14    104561998    rs1770983    T    C    687.32    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.009;DB;DP=54;Dels=0.0;FS=2.369;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.205;QD=12.73;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:26,28:54:99:717,0,758
14    104562060    rs56007227    G    A    396.02    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.946;DB;DP=28;Dels=0.0;FS=3.188;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=14.14;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:14,13:28:99:426,0,415
14    104562189    rs1770982    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    104570904    rs1744299    T    C    359.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:392,30,0
14    104571826    rs1744300    A    G    238.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556267    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:272,21,0
14    104573690    rs1744301    A    G    164.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548372    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
14    104575466    rs1771012    C    T    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548372    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
14    104575531    rs1744302    C    G    120.22    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=10.93;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548372    GT:AD:DP:GQ:PL    0/1:5,6:11:99:150,0,134
14    104578817    rs11850264    G    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299234    GT:AD:DP:GQ:PL    0/1:2,2:4:68.40:72,0,68
14    104638712    rs1557013    C    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    104639519    rs61743517    C    G    48.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=5.4;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=L403;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104639314_104639576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    0/1:6,3:9:78.63:79,0,181
14    104640011    rs2275593    T    C    168.19    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.07;DB;DP=22;Dels=0.0;FS=2.005;HRun=1;HaplotypeScore=1.5362;MQ=57.87;MQ0=0;MQRankSum=-0.705;QD=7.64;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    0/1:15,7:22:99:198,0,441
14    104640098    rs61745565    G    A    300.30    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.17;MQ0=0;MQRankSum=-0.571;QD=10.72;ReadPosRankSum=-1.115;SNPEFF_AMINO_ACID_CHANGE=A502;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104640043_104640205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    0/1:14,13:28:99:330,0,368
14    104641612    rs4906422    T    C    277.04    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=12.59;ReadPosRankSum=0.462;SNPEFF_AMINO_ACID_CHANGE=G690;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104641319_104644235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    0/1:9,13:22:99:307,0,301
14    104642341    rs2487304    A    G    233.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.91;SNPEFF_AMINO_ACID_CHANGE=P1072;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104641319_104644235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423312    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:266,21,0
14    104642524    rs78184481    C    T    109.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.21;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=F1133;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104641319_104644235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423312    GT:AD:DP:GQ:PL    0/1:2,4:6:56.14:139,0,56
14    104642722    .    G    C    73.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.16;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=W1060C;SNPEFF_CODON_CHANGE=tgG/tgC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104641319_104644235;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    0/1:6,6:12:99:104,0,111
14    104643409    rs2487303    A    G    149.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=18.74;SNPEFF_AMINO_ACID_CHANGE=A1289;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104641319_104644235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:183,15,0
14    104643421    rs2487302    T    C    206.87    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.66;MQ0=0;MQRankSum=-1.179;QD=20.69;ReadPosRankSum=-0.762;SNPEFF_AMINO_ACID_CHANGE=L1293;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104641319_104644235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    0/1:3,7:10:52.14:237,0,52
14    104644147    rs11621644    C    T    187.46    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=26.78;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=S1535;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104641319_104644235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    0/1:1,6:7:21.58:217,0,22
14    104644212    rs61743202    A    G    131.95    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=10.15;ReadPosRankSum=1.092;SNPEFF_AMINO_ACID_CHANGE=K1557R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_104641319_104644235;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF26A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315264    GT:AD:DP:GQ:PL    0/1:8,5:13:99:162,0,216
14    105063253    rs11629201    C    T    168.57    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.734;MQ=56.35;MQ0=0;MQRankSum=-0.555;QD=12.97;ReadPosRankSum=-1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-614O9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415614    GT:AD:DP:GQ:PL    0/1:7,6:13:99:199,0,209
14    105070791    rs3803313    G    T    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_AMINO_ACID_CHANGE=L96;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105070774_105071096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-614O9.3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415614    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
14    105167807    rs4983530    C    T    193.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=P35;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105167694_105168093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330634    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:227,18,0
14    105177351    rs3840006    CA    C    660.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=44.2959;IndelType=D;MQ=61.88;MQ0=0;QD=38.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330634    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:703,51,0
14    105178089    rs4983531    T    C    99.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=9.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,10:10:12:132,12,0
14    105178098    rs4983532    G    C    245.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:278,21,0
14    105178153    rs4983533    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
14    105178478    rs4983534    T    C    31.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
14    105179043    rs4497619    G    C    456.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:490,36,0
14    105179081    rs10144190    G    A    449.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:483,36,0
14    105179194    rs10133301    T    C    1319.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_AMINO_ACID_CHANGE=D880;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105179165_105179329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330634    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1353,105,0
14    105180484    rs9672043    C    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
14    105180565    rs4983535    T    C    130.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.7;SNPEFF_AMINO_ACID_CHANGE=D1022;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105180540_105181193;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330634    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:163,12,0
14    105181421    .    C    T    34.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=4.98;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    0/1:4,3:7:64.84:65,0,134
14    105181848    rs4247030    A    G    283.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,11:11:24.07:316,24,0
14    105181851    rs4247031    C    T    246.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474229    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
14    105196230    rs80097179    A    C    89.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=M1L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_START;SNPEFF_EXON_ID=exon_14_105196071_105196550;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332972    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
14    105196235    rs34672588    G    A    87.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_AMINO_ACID_CHANGE=V2;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105196071_105196550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332972    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
14    105196365    rs33958252    T    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_AMINO_ACID_CHANGE=L46;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105196071_105196550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSSL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332972    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
14    105239192    rs2494732    T    C    369.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554826    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:403,30,0
14    105258892    rs2494748    C    T    165.49    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DB;DP=31;Dels=0.0;FS=3.155;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.353;QD=5.34;ReadPosRankSum=-0.145;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553797    GT:AD:DP:GQ:PL    0/1:17,14:31:99:195,0,506
14    105258893    rs2494749    A    G    771.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=24.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553797    GT:AD:DP:GQ:PL    1/1:0,31:31:66.17:805,66,0
14    105344111    rs78118267    G    A    127.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.88;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
14    105344157    rs75824199    G    A    212.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7153;MQ=41.37;MQ0=0;QD=19.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,10:11:24.02:246,24,0
14    105344188    .    TCCCC    T    204.65    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DP=17;FS=3.09;HRun=14;HaplotypeScore=197.6045;IndelType=D;MQ=38.48;MQ0=0;MQRankSum=-0.278;QD=12.04;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    0/1:8,7:17:88.66:244,0,89
14    105344293    rs61995995    C    T    1329.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.71;MQ0=0;QD=28.29;SNPEFF_AMINO_ACID_CHANGE=F19;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105344222_105344300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418279    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1362,105,0
14    105344318    rs2304758    G    A    1028.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.79;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:1,31:32:87.25:1061,87,0
14    105344347    rs2304757    C    G    686.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:719,60,0
14    105344419    rs34009344    A    G    308.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:341,27,0
14    105344568    rs2304755    C    T    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
14    105344603    rs41310934    C    T    123.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
14    105344761    rs41317300    C    T    1971.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2004,150,0
14    105344872    rs61995998    C    T    1412.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1445,117,0
14    105345035    rs7150561    C    A    160.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
14    105346907    rs2841233    T    C    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    105349220    rs2028415    T    G    191.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:224,18,0
14    105349388    rs2028414    A    C    206.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_AMINO_ACID_CHANGE=P128;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105349372_105349845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418279    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:240,18,0
14    105349877    rs10145119    C    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=9.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,6:6:6.02:85,6,0
14    105349886    rs10145122    C    T    93.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=13.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,7:7:9.03:125,9,0
14    105349891    rs10145270    G    A    81.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=11.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,7:7:9.03:113,9,0
14    105349897    rs10145031    A    G    93.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=13.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,7:7:9.03:126,9,0
14    105350355    rs2841236    A    G    499.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=T133;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105350168_105350375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556215    GT:AD:DP:GQ:PL    1/1:0,15:15:42.10:532,42,0
14    105350868    rs9788594    C    T    98.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.51;SNPEFF_AMINO_ACID_CHANGE=A514;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105350168_105350886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418279    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:131,12,0
14    105351673    rs894038    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
14    105354293    rs2582548    A    G    137    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.83;SNPEFF_AMINO_ACID_CHANGE=S1169;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105352612_105354315;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418279    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:169,12,0
14    105356137    rs2919629    G    C    1512.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.075;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.68;MQ0=0;MQRankSum=1.506;QD=32.88;ReadPosRankSum=1.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:1,45:46:80.38:1546,80,0
14    105359077    rs117364891    C    T    119.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
14    105359306    rs3742939    G    C    245.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
14    105359827    rs2247712    T    C    110.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:143,12,0
14    105360355    rs6576062    C    T    81.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
14    105360746    rs2841244    T    C    859.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=26.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414716    GT:AD:DP:GQ:PL    1/1:0,33:33:75.20:893,75,0
14    105398787    rs2582533    G    C    73.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:106,9,0
14    105404384    rs1048257    T    C    3058.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.125;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6649;MQ=59.24;MQ0=0;MQRankSum=0.54;QD=33.61;ReadPosRankSum=1.121;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392593    GT:AD:DP:GQ:PL    1/1:2,88:91:99:3091,162,0
14    105405599    rs3742935    G    C    3897.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.82;MQ0=0;MQRankSum=1.594;QD=30.69;ReadPosRankSum=-1.594;SNPEFF_AMINO_ACID_CHANGE=P395A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403590_105406896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000557457    GT:AD:DP:GQ:PL    1/1:1,126:127:99:3898,266,0
14    105405942    rs28454709    G    A    4191.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3003;MQ=58.49;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=L280;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403590_105406896;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000557457    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4192,325,0
14    105406238    rs2819419    A    C    6736.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=191;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.472;MQ=59.66;MQ0=0;QD=35.27;SNPEFF_AMINO_ACID_CHANGE=Y182D;SNPEFF_CODON_CHANGE=Tac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403590_105406896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000557457    GT:AD:DP:GQ:PL    1/1:0,191:191:99:6737,503,0
14    105406372    rs61421370    C    T    2683.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=G137E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403590_105406896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000557457    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2717,208,0
14    105407031    rs11623422    A    G    719.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_AMINO_ACID_CHANGE=S4919;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:753,57,0
14    105407208    rs11851053    T    C    371.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=28.56;SNPEFF_AMINO_ACID_CHANGE=V4860;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:404,30,0
14    105407798    rs4465542    T    C    2006.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.87;SNPEFF_AMINO_ACID_CHANGE=T4664A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2040,159,0
14    105408030    rs9671643    A    G    6537.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=201;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4084;MQ=59.68;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=D4586;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,200:201:99:6537,529,0
14    105408182    rs9672139    T    G    6797.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=201;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5774;MQ=59.12;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=M4536L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,201:201:99:6798,509,0
14    105408315    rs28600075    T    C    5618.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.091;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3894;MQ=59.87;MQ0=0;MQRankSum=0.436;QD=32.11;ReadPosRankSum=0.719;SNPEFF_AMINO_ACID_CHANGE=P4491;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,174:175:99:5618,411,0
14    105408811    rs2819421    A    G    6162.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=199;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=45.57;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=L4326P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,199:199:99:6162,520,0
14    105408827    rs11850949    A    C    6832.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=236;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=43.87;MQ0=0;QD=28.95;SNPEFF_AMINO_ACID_CHANGE=L4321V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,236:236:99:6832,562,0
14    105408955    rs2819422    A    G    6268.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=206;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=55.12;MQ0=0;QD=30.43;SNPEFF_AMINO_ACID_CHANGE=V4278A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,206:206:99:6268,505,0
14    105409907    rs10141053    T    C    7200.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DB;DP=235;DS;Dels=0.0;FS=3.151;HRun=0;HaplotypeScore=3.4936;MQ=56.44;MQ0=0;MQRankSum=0.353;QD=30.64;ReadPosRankSum=-0.179;SNPEFF_AMINO_ACID_CHANGE=M3961V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:3,232:235:99:7201,550,0
14    105409959    rs10152073    G    T    7904.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=236;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5783;MQ=56.56;MQ0=0;MQRankSum=0.179;QD=33.49;ReadPosRankSum=-0.971;SNPEFF_AMINO_ACID_CHANGE=A3943;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,235:236:99:7905,571,0
14    105410183    rs10438246    T    C    5241.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;DB;DP=166;Dels=0.0;FS=7.092;HRun=0;HaplotypeScore=2.7591;MQ=58.78;MQ0=0;MQRankSum=0.58;QD=31.57;ReadPosRankSum=0.279;SNPEFF_AMINO_ACID_CHANGE=M3869V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:2,164:166:99:5241,373,0
14    105410411    rs11160825    C    T    8214.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.449;DB;DP=232;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2217;MQ=59.8;MQ0=0;MQRankSum=0.264;QD=35.41;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=D3793N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:3,229:232:99:8215,518,0
14    105410775    rs2819424    A    G    5365.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7249;MQ=58.5;MQ0=0;QD=32.13;SNPEFF_AMINO_ACID_CHANGE=D3671;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,166:167:99:5365,436,0
14    105410827    rs28380382    C    T    7738.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.67;DB;DP=227;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.5938;MQ=59.39;MQ0=0;MQRankSum=0.654;QD=34.09;ReadPosRankSum=-1.239;SNPEFF_AMINO_ACID_CHANGE=G3654E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,226:227:99:7739,541,0
14    105411153    rs34499888    G    A    5864.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6417;MQ=58.4;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=P3545;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,178:179:99:5864,448,0
14    105411700    rs4264326    A    G    5812.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;DB;DP=182;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.133;MQ=58.7;MQ0=0;MQRankSum=1.479;QD=31.94;ReadPosRankSum=0.993;SNPEFF_AMINO_ACID_CHANGE=V3363A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,180:182:99:5812,427,0
14    105411753    .    G    A    2551.62    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.766;DP=195;Dels=0.0;FS=3.513;HRun=1;HaplotypeScore=2.8784;MQ=55.97;MQ0=0;MQRankSum=-0.056;QD=13.09;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=P3345;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:92,101:195:99:2582,0,2646
14    105411781    rs10438247    G    A    6426.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=219;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=53.09;MQ0=0;QD=29.34;SNPEFF_AMINO_ACID_CHANGE=P3336L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,218:219:99:6426,473,0
14    105411957    .    G    A    799.51    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.929;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.09;MQ0=14;MQRankSum=-1.732;QD=8.08;ReadPosRankSum=0.042;SNPEFF_AMINO_ACID_CHANGE=D3277;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:3,96:99:42.97:833,43,0
14    105411971    rs28737397    T    C    515.77    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.522;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=24.54;MQ0=13;MQRankSum=-1.732;QD=6.29;ReadPosRankSum=1.26;SNPEFF_AMINO_ACID_CHANGE=S3273G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,81:82:13.50:548,13,0
14    105412005    rs28564728    A    G    1782.78    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.2;MQ0=9;QD=20.26;SNPEFF_AMINO_ACID_CHANGE=D3261;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,88:88:99:1816,156,0
14    105412009    rs28714612    A    G    1894.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.58;MQ0=13;QD=21.05;SNPEFF_AMINO_ACID_CHANGE=M3260T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,90:90:99:1928,165,0
14    105412066    rs77154428    C    T    3032.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.1;MQ0=22;QD=23.51;SNPEFF_AMINO_ACID_CHANGE=R3241H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,129:129:99:3066,232,0
14    105412138    .    A    G    511.58    MQFilter40    AC=2;AF=1.00;AN=2;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=35.67;MQ0=9;QD=15.5;SNPEFF_AMINO_ACID_CHANGE=L3217P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,33:33:48.09:545,48,0
14    105412347    rs55842266    C    T    974.96    MQFilter40    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.091;DB;DP=66;Dels=0.0;FS=58.527;HRun=2;HaplotypeScore=0.0;MQ=24.95;MQ0=11;MQRankSum=5.293;QD=14.77;ReadPosRankSum=-6.132;SNPEFF_AMINO_ACID_CHANGE=K3147;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:27,39:66:99:1005,0,349
14    105412363    .    T    C    212.99    MQFilter40    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.176;DP=77;Dels=0.0;FS=38.008;HRun=1;HaplotypeScore=0.9894;MQ=30.08;MQ0=10;MQRankSum=-6.245;QD=2.77;ReadPosRankSum=6.231;SNPEFF_AMINO_ACID_CHANGE=K3142R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:54,23:77:99:243,0,1501
14    105412541    rs12433837    C    T    1658.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.05;MQ0=19;QD=18.22;SNPEFF_AMINO_ACID_CHANGE=V3083I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,91:91:99:1691,186,0
14    105412542    rs12433815    A    G    1645.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.99;MQ0=19;QD=18.29;SNPEFF_AMINO_ACID_CHANGE=D3082;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,90:90:99:1679,186,0
14    105412554    rs12436986    T    G    1682.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=25.42;MQ0=23;QD=19.34;SNPEFF_AMINO_ACID_CHANGE=G3078;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,86:87:99:1716,153,0
14    105412561    rs3000771    C    T    2239.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=30.85;MQ0=23;QD=23.09;SNPEFF_AMINO_ACID_CHANGE=R3076H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,96:97:99:2272,199,0
14    105413204    rs2582514    G    T    7238.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DB;DP=208;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3647;MQ=54.19;MQ0=1;MQRankSum=-0.515;QD=34.8;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=R2862S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,207:208:99:7239,536,0
14    105413223    rs55797226    A    G    7483.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DB;DP=213;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5456;MQ=53.79;MQ0=1;MQRankSum=-1.235;QD=35.13;ReadPosRankSum=-0.721;SNPEFF_AMINO_ACID_CHANGE=D2855;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:3,210:213:99:7483,541,0
14    105413790    rs11848564    G    A    7354    PASS    AC=2;AF=1.00;AN=2;DB;DP=213;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2079;MQ=58.85;MQ0=0;QD=34.53;SNPEFF_AMINO_ACID_CHANGE=S2666;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,213:213:99:7354,551,0
14    105414238    rs60754080    C    A    6325.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DB;DP=208;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4494;MQ=43.14;MQ0=2;MQRankSum=-0.474;QD=30.41;ReadPosRankSum=-0.353;SNPEFF_AMINO_ACID_CHANGE=G2517V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,206:208:99:6325,520,0
14    105414252    rs60106058    C    T    6778.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=211;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9793;MQ=47.8;MQ0=1;QD=32.13;SNPEFF_AMINO_ACID_CHANGE=K2512;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,210:211:99:6778,557,0
14    105414280    rs2819429    T    G    7642.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=239;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=54.63;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=E2503A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,239:239:99:7642,629,0
14    105414629    rs72702027    G    A    8211.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=240;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.69;MQ0=0;QD=34.21;SNPEFF_AMINO_ACID_CHANGE=P2387S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,240:240:99:8211,614,0
14    105414790    rs2582513    A    G    7847.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.09;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.2992;MQ=59.42;MQ0=0;MQRankSum=-1.217;QD=31.52;ReadPosRankSum=1.064;SNPEFF_AMINO_ACID_CHANGE=L2333P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,248:249:99:7848,590,0
14    105414810    rs10145032    C    G    8687.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.075;DB;DP=248;DS;Dels=0.0;FS=3.028;HRun=0;HaplotypeScore=0.9983;MQ=59.42;MQ0=0;MQRankSum=0.432;QD=35.03;ReadPosRankSum=0.691;SNPEFF_AMINO_ACID_CHANGE=L2326;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:2,246:248:99:8688,570,0
14    105415200    rs10145566    G    C    3187.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.242;DB;DP=105;Dels=0.0;FS=5.071;HRun=0;HaplotypeScore=1.6988;MQ=48.76;MQ0=3;MQRankSum=-0.624;QD=30.36;ReadPosRankSum=1.282;SNPEFF_AMINO_ACID_CHANGE=L2196;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,104:105:99:3221,213,0
14    105415229    rs10134675    T    C    1715.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.492;DB;DP=76;Dels=0.0;FS=5.283;HRun=0;HaplotypeScore=0.9665;MQ=43.54;MQ0=3;MQRankSum=-0.77;QD=22.57;ReadPosRankSum=-0.866;SNPEFF_AMINO_ACID_CHANGE=M2187V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,75:76:99:1748,112,0
14    105415745    rs117379881    C    G    4448.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DB;DP=150;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2929;MQ=50.87;MQ0=4;MQRankSum=-0.037;QD=29.66;ReadPosRankSum=-1.314;SNPEFF_AMINO_ACID_CHANGE=A2015P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,149:150:99:4449,343,0
14    105415748    rs118171013    G    A    4650.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DB;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5812;MQ=51.14;MQ0=4;MQRankSum=0.462;QD=29.62;ReadPosRankSum=-1.524;SNPEFF_AMINO_ACID_CHANGE=P2014S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,156:157:99:4650,331,0
14    105416010    rs2582511    T    C    7258.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=223;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9552;MQ=59.15;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=T1926;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,223:223:99:7258,563,0
14    105416220    rs2819435    T    A    8028.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.1602;MQ=56.79;MQ0=2;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=E1856D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,242:250:99:8028,608,0
14    105416323    rs11847209    T    C    166.61    QDFilter2    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.229;DB;DP=240;DS;Dels=0.0;FS=9.839;HRun=1;HaplotypeScore=1.367;MQ=50.03;MQ0=4;MQRankSum=-6.468;QD=0.69;ReadPosRankSum=1.061;SNPEFF_AMINO_ACID_CHANGE=K1822R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:205,35:240:99:197,0,6869
14    105416649    rs28593209    G    A    6082.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=52.91;MQ0=3;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=A1713;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,179:180:99:6082,466,0
14    105416685    rs2582506    C    G    7209.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=209;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3687;MQ=52.93;MQ0=3;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=L1701;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,209:209:99:7210,554,0
14    105416784    rs59373922    A    G    2859.53    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=250;DS;Dels=0.0;FS=2.249;HRun=0;HaplotypeScore=3.4872;MQ=52.02;MQ0=1;MQRankSum=-4.286;QD=11.44;ReadPosRankSum=-0.145;SNPEFF_AMINO_ACID_CHANGE=F1668;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:131,119:250:99:2890,0,3980
14    105416790    rs143480617    T    C    2961.62    PASS    AB=0.498;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.576;DB;DP=245;DS;Dels=0.0;FS=2.957;HRun=0;HaplotypeScore=1.8319;MQ=52.12;MQ0=1;MQRankSum=-4.474;QD=12.09;ReadPosRankSum=-1.552;SNPEFF_AMINO_ACID_CHANGE=P1666;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:122,123:245:99:2992,0,3780
14    105416959    rs2013462    A    G    6266.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=213;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4132;MQ=39.13;MQ0=8;QD=29.42;SNPEFF_AMINO_ACID_CHANGE=V1610A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,213:213:99:6267,535,0
14    105417102    rs2248966    T    C    5919.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.179;DB;DP=219;Dels=0.0;FS=3.516;HRun=1;HaplotypeScore=2.7306;MQ=47.83;MQ0=1;MQRankSum=0.968;QD=27.03;ReadPosRankSum=1.179;SNPEFF_AMINO_ACID_CHANGE=P1562;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,218:219:99:5920,469,0
14    105417103    rs61996045    G    A    5890.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.032;DB;DP=221;Dels=0.0;FS=3.563;HRun=0;HaplotypeScore=2.7306;MQ=47.69;MQ0=1;MQRankSum=0.994;QD=26.65;ReadPosRankSum=1.251;SNPEFF_AMINO_ACID_CHANGE=P1562L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,220:221:99:5890,469,0
14    105417147    rs2013445    A    G    5887.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085;DB;DP=208;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=4.6815;MQ=44.9;MQ0=8;MQRankSum=-1.067;QD=28.3;ReadPosRankSum=0.105;SNPEFF_AMINO_ACID_CHANGE=S1547;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,207:208:99:5887,448,0
14    105417222    rs2013274    C    T    1902.88    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;DB;DP=106;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.41;MQ0=12;MQRankSum=-0.628;QD=17.95;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=K1522;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,105:106:99:1936,156,0
14    105417225    rs2894635    C    G    1951.37    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DB;DP=102;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.19;MQ0=12;MQRankSum=-0.669;QD=19.13;ReadPosRankSum=-0.827;SNPEFF_AMINO_ACID_CHANGE=P1521;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,101:102:99:1984,159,0
14    105417228    rs2248960    C    T    1924.87    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.07;MQ0=12;MQRankSum=-0.063;QD=19.84;ReadPosRankSum=-0.647;SNPEFF_AMINO_ACID_CHANGE=A1520;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,95:97:99:1958,153,0
14    105417243    rs77111827    T    C    1835.91    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.183;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.97;MQ0=7;MQRankSum=-0.76;QD=20.17;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=S1515;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,90:91:99:1869,147,0
14    105417313    rs80275639    T    C    272.43    MQFilter40    AB=0.028;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=18.86;MQ0=4;MQRankSum=-1.733;QD=7.57;ReadPosRankSum=1.408;SNPEFF_AMINO_ACID_CHANGE=K1492R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:1,35:36:0.70:301,0,1
14    105417326    rs79775171    T    C    226.16    MQFilter40    AB=0.032;AC=1;AF=0.50;AN=2;BaseQRankSum=0.835;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6229;MQ=19.02;MQ0=4;MQRankSum=-1.733;QD=7.3;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=T1488A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:1,30:31:1.82:255,0,2
14    105417353    rs77667449    T    G    142.07    MQFilter40    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.67;MQ0=1;MQRankSum=-0.751;QD=14.21;ReadPosRankSum=-0.751;SNPEFF_AMINO_ACID_CHANGE=M1479L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:1,9:10:17.23:172,0,17
14    105417358    rs75990247    T    C    94.92    MQFilter40    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.47;MQ0=0;MQRankSum=-0.742;QD=13.56;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=E1477G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    0/1:1,6:7:18.11:125,0,18
14    105418149    rs147978925    A    T    706.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.97;MQ0=1;QD=22.08;SNPEFF_AMINO_ACID_CHANGE=I1213;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,32:32:60.15:739,60,0
14    105418155    rs141600524    G    C    779.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.69;MQ0=1;QD=19.48;SNPEFF_AMINO_ACID_CHANGE=L1211;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,40:40:69.15:812,69,0
14    105418166    rs78116894    T    C    1273.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.86;MQ0=1;QD=22.74;SNPEFF_AMINO_ACID_CHANGE=T1208A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1307,111,0
14    105418194    rs78447535    A    G    2087.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=35.56;MQ0=1;QD=25.46;SNPEFF_AMINO_ACID_CHANGE=S1198;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2121,186,0
14    105418260    rs56330864    T    A    3048.39    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.975;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7206;MQ=35.01;MQ0=9;MQRankSum=-2.462;QD=23.63;ReadPosRankSum=0.051;SNPEFF_AMINO_ACID_CHANGE=S1176;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:3,126:129:99:3081,220,0
14    105418264    rs55650155    G    A    3060.95    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.774;DB;DP=136;Dels=0.0;FS=2.84;HRun=0;HaplotypeScore=0.734;MQ=34.58;MQ0=9;MQRankSum=-2.448;QD=22.51;ReadPosRankSum=0.456;SNPEFF_AMINO_ACID_CHANGE=A1175V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:5,131:136:99:3094,191,0
14    105418275    rs2819441    T    C    4015.26    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.788;DB;DP=164;Dels=0.0;FS=3.691;HRun=0;HaplotypeScore=3.0588;MQ=38.32;MQ0=9;MQRankSum=-2.358;QD=24.48;ReadPosRankSum=-1.523;SNPEFF_AMINO_ACID_CHANGE=P1171;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:3,161:164:99:4015,285,0
14    105418344    rs55791176    T    G    6966.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.296;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.8886;MQ=48.82;MQ0=1;MQRankSum=-0.668;QD=27.86;ReadPosRankSum=1.568;SNPEFF_AMINO_ACID_CHANGE=E1148D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:6,243:250:99:6966,464,0
14    105418391    rs11625007    C    T    6846.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DB;DP=217;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8265;MQ=51.66;MQ0=1;MQRankSum=0.406;QD=31.55;ReadPosRankSum=0.157;SNPEFF_AMINO_ACID_CHANGE=V1133I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,216:217:99:6846,501,0
14    105420927    rs879210    A    G    448.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_AMINO_ACID_CHANGE=P287;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:481,36,0
14    105421050    rs879209    T    G    388.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.78;SNPEFF_AMINO_ACID_CHANGE=P246;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105403654_105421136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:422,33,0
14    105421236    rs66540327    CAGCCAGCAGGGTAGTGA    C    1307.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=216.8434;IndelType=D;MQ=42.22;MQ0=0;QD=100.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:1350,36,0
14    105423227    rs11621410    A    G    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AHNAK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333244    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
14    105453413    rs2241867    G    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf79;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547315    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
14    105457771    rs2247140    A    G    835.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.48;MQ0=0;QD=23.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf79;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551046    GT:AD:DP:GQ:PL    1/1:0,34:36:78.14:868,78,0
14    105461050    rs34350817    C    T    687.45    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=41;Dels=0.0;FS=2.908;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.229;QD=16.77;ReadPosRankSum=-1.313;SNPEFF_AMINO_ACID_CHANGE=T311I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105460935_105461849;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf79;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547315    GT:AD:DP:GQ:PL    0/1:15,26:41:99:717,0,422
14    105461067    rs894039    C    T    1267.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_AMINO_ACID_CHANGE=L317;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105460935_105461849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf79;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547315    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1300,96,0
14    105478102    rs3803294    G    A    1591.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=58.67;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=N55;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105475910_105478272;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDCA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336219    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1624,123,0
14    105622056    rs2816679    A    G    167.87    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.054;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=9.87;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331782    GT:AD:DP:GQ:PL    0/1:11,6:17:99:198,0,317
14    105676048    rs3087836    G    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327359    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
14    105686570    rs8005486    T    C    142.41    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=17.8;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549655    GT:AD:DP:GQ:PL    0/1:3,5:8:99:172,0,100
14    105692697    rs12883636    G    C    643.61    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.471;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7675;MQ=59.48;MQ0=0;MQRankSum=-1.348;QD=17.88;ReadPosRankSum=0.963;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550208    GT:AD:DP:GQ:PL    0/1:15,21:36:99:674,0,435
14    105695324    rs112359070    C    A    1083.15    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.559;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.186;QD=15.7;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327359    GT:AD:DP:GQ:PL    0/1:35,34:69:99:1113,0,1152
14    105716377    rs45452103    C    T    319.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.017;DB;DP=35;Dels=0.0;FS=1.524;HRun=2;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-1.283;QD=9.12;ReadPosRankSum=0.383;SNPEFF_AMINO_ACID_CHANGE=L201;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105715977_105717421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327471    GT:AD:DP:GQ:PL    0/1:20,15:35:99:349,0,632
14    105833623    rs111376436    C    T    412.25    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.264;DB;DP=44;Dels=0.0;FS=5.287;HRun=0;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=0.581;QD=9.37;ReadPosRankSum=1.339;SNPEFF_AMINO_ACID_CHANGE=A136V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105833550_105833712;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PACS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547217    GT:AD:DP:GQ:PL    0/1:24,19:44:99:442,0,689
14    105904830    rs7153174    C    T    554.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331320    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:588,45,0
14    105905126    rs4983620    C    T    1962.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8255;MQ=58.86;MQ0=0;MQRankSum=-1.732;QD=32.17;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331320    GT:AD:DP:GQ:PL    1/1:2,59:61:99:1995,153,0
14    105911639    rs6576102    G    A    272.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331320    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:305,24,0
14    105916420    rs4983409    C    T    1202.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.34;MQ0=0;QD=34.37;SNPEFF_AMINO_ACID_CHANGE=N3;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105916395_105916521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000498644    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1236,93,0
14    105924538    rs7492915    G    A    361.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331320    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:394,30,0
14    105929443    rs7143366    C    T    1581.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=54.09;MQ0=0;QD=35.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494026    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1615,123,0
14    105929745    rs74092385    C    T    296.67    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=24;Dels=0.0;FS=1.685;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.254;QD=12.36;ReadPosRankSum=1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481012    GT:AD:DP:GQ:PL    0/1:14,10:24:99:327,0,500
14    105930406    rs4983413    G    A    3182.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.15;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=V164I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105930369_105930484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434050    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3215,241,0
14    105930923    rs11845995    G    A    504.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8947;MQ=58.02;MQ0=0;QD=19.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481012    GT:AD:DP:GQ:PL    1/1:1,21:26:48.09:538,48,0
14    105935721    rs10150545    A    G    167.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=15.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469140    GT:AD:DP:GQ:PL    1/1:0,10:11:18.03:200,18,0
14    105935824    rs13707    G    A    557.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=26.54;SNPEFF_AMINO_ACID_CHANGE=A152T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105935804_105935835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435036    GT:AD:DP:GQ:PL    1/1:0,21:21:45.14:590,45,0
14    105945891    rs11849001    C    T    902.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=27.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548923    GT:AD:DP:GQ:PL    1/1:0,33:33:72.23:935,72,0
14    105953204    rs12323571    T    C    210.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496700    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
14    105953324    rs7160340    C    T    187.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8325;MQ=60.0;MQ0=0;QD=26.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392531    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:221,18,0
14    105953330    rs34296176    GC    G    111.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=7;HaplotypeScore=34.4514;IndelType=D;MQ=60.0;MQ0=0;QD=18.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392531    GT:AD:DP:GQ:PL    1/1:1,5:6:15.03:153,15,0
14    105962234    rs7494350    T    C    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_AMINO_ACID_CHANGE=A234;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_14_105962217_105962423;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C14orf80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392523    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    106054428    rs9972103    C    G    347.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.18;MQ0=3;QD=20.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390539    GT:AD:DP:GQ:PL    1/1:0,16:17:33.09:381,33,0
14    106054456    rs61984162    A    G    355.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=35.99;MQ0=3;QD=22.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390539    GT:AD:DP:GQ:PL    1/1:0,16:16:33.09:389,33,0
14    106054748    rs74519992    G    A    148.05    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.301;DB;DP=24;Dels=0.0;FS=2.236;HRun=0;HaplotypeScore=0.8941;MQ=52.75;MQ0=0;MQRankSum=-2.773;QD=6.17;ReadPosRankSum=1.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390539    GT:AD:DP:GQ:PL    0/1:17,7:24:99:178,0,483
14    106054791    rs73357622    G    T    84.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=16;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=52.84;MQ0=0;MQRankSum=-2.224;QD=5.28;ReadPosRankSum=-0.163;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390539    GT:AD:DP:GQ:PL    0/1:10,6:16:99:115,0,287
14    106054796    rs74091253    A    G    104.71    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=53.08;MQ0=0;MQRankSum=-1.791;QD=8.05;ReadPosRankSum=-1.791;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390539    GT:AD:DP:GQ:PL    0/1:7,6:13:99:135,0,125
14    106066454    rs4983454    T    C    1866.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.61;MQ0=8;QD=27.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390540    GT:AD:DP:GQ:PL    1/1:0,69:69:99:1900,171,0
14    106067618    rs12884681    G    A    528.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390540    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:562,42,0
14    106090724    rs11622180    C    T    121.03    MQFilter40    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.391;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.52;MQ0=0;MQRankSum=1.025;QD=7.12;ReadPosRankSum=-1.708;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    0/1:7,10:17:58.94:151,0,59
14    106090728    rs11622181    C    T    124.88    MQFilter40    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.52;MQ0=0;MQRankSum=1.025;QD=7.35;ReadPosRankSum=-1.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    0/1:7,10:17:58.94:155,0,59
14    106090741    rs11557943    C    G    161.19    MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=28.86;MQ0=0;MQRankSum=1.479;QD=8.48;ReadPosRankSum=-0.718;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    0/1:7,12:19:55.93:191,0,56
14    106090927    rs8010914    G    T    4900.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.302;DB;DP=147;Dels=0.0;FS=6.368;HRun=1;HaplotypeScore=2.3894;MQ=55.92;MQ0=0;MQRankSum=4.057;QD=33.34;ReadPosRankSum=0.912;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    1/1:6,141:147:99:4901,333,0
14    106091857    rs118149474    G    C    306.70    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.03;MQ0=0;MQRankSum=-0.163;QD=18.04;ReadPosRankSum=-1.356;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    0/1:7,10:17:99:337,0,167
14    106092003    rs4983479    C    A    715.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.29;MQ0=0;QD=34.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:749,60,0
14    106092383    rs12434110    C    G    378.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=29.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:412,33,0
14    106092486    rs28582906    T    C    93.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=23.26;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:126,12,0
14    106092522    rs28562180    C    T    77.12    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.54;MQ0=0;MQRankSum=0.731;QD=15.42;ReadPosRankSum=-0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390543    GT:AD:DP:GQ:PL    0/1:1,4:5:18.56:107,0,19
14    106109493    rs112515991    G    A    175.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.87;MQ0=7;QD=10.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460164    GT:AD:DP:GQ:PL    1/1:0,16:16:18.04:208,18,0
14    106109573    rs28371022    T    C    1516.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.88;MQ0=29;QD=16.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460164    GT:AD:DP:GQ:PL    1/1:0,93:94:99:1550,147,0
14    106109752    rs4983499    A    C    2551.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8628;MQ=28.79;MQ0=22;QD=20.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460164    GT:AD:DP:GQ:PL    1/1:0,121:122:99:2584,237,0
14    106110057    rs11160859    G    A    4834.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.498;DB;DP=160;Dels=0.0;FS=6.088;HRun=1;HaplotypeScore=4.5444;MQ=57.73;MQ0=0;MQRankSum=4.406;QD=30.03;ReadPosRankSum=-1.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460164    GT:AD:DP:GQ:PL    1/1:7,153:160:99:4834,261,0
14    106110330    rs8014709    T    C    1391.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.94;MQ0=0;QD=33.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460164    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1425,117,0
14    106110966    rs11557955    C    T    887.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.35;MQ0=0;QD=38.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497397    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:920,69,0
14    106111210    rs11623478    T    C    89.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.72;MQ0=0;QD=12.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497397    GT:AD:DP:GQ:PL    1/1:0,7:7:12.02:122,12,0
14    106111211    rs11627700    G    A    85.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.99;MQ0=0;QD=14.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-731F5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497397    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:118,12,0
14    106133338    rs28715820    C    G    850.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.14;MQ0=6;QD=22.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGHGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390555    GT:AD:DP:GQ:PL    1/1:3,35:38:75.17:884,75,0
14    106133346    rs28441278    T    C    815.39    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.76;MQ0=5;QD=23.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGHGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390555    GT:AD:DP:GQ:PL    1/1:3,30:34:69.14:848,69,0
14    106133355    rs12878669    G    C    496.17    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.09;MQ0=3;QD=15.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGHGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390555    GT:AD:DP:GQ:PL    1/1:2,31:33:53.97:529,54,0
14    106133356    rs12878671    G    A    491.18    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.09;MQ0=3;QD=14.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGHGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390555    GT:AD:DP:GQ:PL    1/1:2,31:33:53.95:524,54,0
14    106134510    rs10144438    G    C    167.54    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.97;MQ0=3;MQRankSum=-1.522;QD=4.41;ReadPosRankSum=0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ELK2AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392510    GT:AD:DP:GQ:PL    0/1:27,11:38:99:198,0,730
14    106134588    rs11349453    AC    A    327.62    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=4.356;DB;DP=57;FS=3.194;HRun=4;HaplotypeScore=214.4928;IndelType=D;MQ=51.45;MQ0=0;MQRankSum=-4.28;QD=5.12;ReadPosRankSum=0.746;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGHGP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000390555    GT:AD:DP:GQ:PL    0/1:42,22:57:99:367,0,1491
14    106134628    rs10144455    C    G    128.03    QDFilter2    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=88;Dels=0.0;FS=17.916;HRun=0;HaplotypeScore=0.5784;MQ=52.41;MQ0=1;MQRankSum=-6.608;QD=1.45;ReadPosRankSum=-1.388;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ELK2AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392510    GT:AD:DP:GQ:PL    0/1:63,25:88:99:158,0,2043
14    106134672    rs10144636    G    C    328.26    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=0.7;DB;DP=114;Dels=0.0;FS=9.134;HRun=1;HaplotypeScore=3.1713;MQ=50.77;MQ0=4;MQRankSum=-6.202;QD=2.88;ReadPosRankSum=-1.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ELK2AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392510    GT:AD:DP:GQ:PL    0/1:84,30:114:99:358,0,2680
14    106134706    rs10144399    A    G    813.02    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=128;Dels=0.0;FS=8.164;HRun=0;HaplotypeScore=2.8925;MQ=52.33;MQ0=3;MQRankSum=-7.272;QD=6.35;ReadPosRankSum=0.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ELK2AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392510    GT:AD:DP:GQ:PL    0/1:84,44:128:99:843,0,2587
14    106134806    rs10144746    G    A    1342.41    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.51;DB;DP=135;Dels=0.0;FS=2.308;HRun=0;HaplotypeScore=2.3977;MQ=56.26;MQ0=0;MQRankSum=-2.278;QD=9.94;ReadPosRankSum=-0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ELK2AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392510    GT:AD:DP:GQ:PL    0/1:80,55:135:99:1372,0,2468
14    106135271    rs34678053    G    A    794.76    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.39;DB;DP=54;Dels=0.0;FS=6.274;HRun=0;HaplotypeScore=0.5784;MQ=58.99;MQ0=0;MQRankSum=0.926;QD=14.72;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ELK2AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392510    GT:AD:DP:GQ:PL    0/1:26,28:54:99:825,0,854
14    106136310    rs7154333    A    G    33.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=-1.026;QD=8.31;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ELK2AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392510    GT:AD:DP:GQ:PL    0/1:2,2:4:63.22:63,0,71
14    106170930    rs146575147    C    G    263.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.94;MQ0=2;QD=21.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390547    GT:AD:DP:GQ:PL    1/1:1,11:12:24.06:297,24,0
14    106173790    rs17349690    A    G    498.16    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=0.63;DB;DP=100;Dels=0.0;FS=2.462;HRun=0;HaplotypeScore=1.5774;MQ=42.0;MQ0=4;MQRankSum=0.872;QD=4.98;ReadPosRankSum=-1.682;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390547    GT:AD:DP:GQ:PL    0/1:74,26:100:99:528,0,1765
14    106173808    .    G    A    100.99    QDFilter2    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.116;DP=87;Dels=0.0;FS=9.645;HRun=0;HaplotypeScore=2.6182;MQ=45.1;MQ0=2;MQRankSum=-2.408;QD=1.16;ReadPosRankSum=0.354;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390547    GT:AD:DP:GQ:PL    0/1:74,13:87:99:131,0,1956
14    106173971    rs10220590    T    C    76.10    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=12;Dels=0.0;FS=3.31;HRun=3;HaplotypeScore=0.734;MQ=23.1;MQ0=4;MQRankSum=0.55;QD=6.34;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390547    GT:AD:DP:GQ:PL    0/1:5,6:12:36.32:106,0,36
14    106174261    rs1407    C    G    238.61    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.671;QD=11.93;ReadPosRankSum=-0.532;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390547    GT:AD:DP:GQ:PL    0/1:11,9:20:99:269,0,341
14    106174654    .    C    G    77.50    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DP=17;Dels=0.0;FS=6.69;HRun=1;HaplotypeScore=0.0;MQ=50.89;MQ0=0;MQRankSum=-3.172;QD=4.56;ReadPosRankSum=-0.906;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390547    GT:AD:DP:GQ:PL    0/1:11,5:17:99:107,0,384
14    106188045    rs11624491    C    T    254.75    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=54.05;MQ0=0;MQRankSum=-1.271;QD=11.08;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGHEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521393    GT:AD:DP:GQ:PL    0/1:13,10:23:99:285,0,455
14    106188230    rs1134590    C    T    305.99    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.748;DB;DP=69;Dels=0.0;FS=6.048;HRun=1;HaplotypeScore=0.0;MQ=46.37;MQ0=10;MQRankSum=-6.387;QD=4.43;ReadPosRankSum=-0.745;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGHEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521393    GT:AD:DP:GQ:PL    0/1:37,32:69:99:336,0,1244
14    106188309    rs11624581    C    T    167.45    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=22;Dels=0.0;FS=4.786;HRun=0;HaplotypeScore=0.0;MQ=47.01;MQ0=3;MQRankSum=-1.648;QD=7.61;ReadPosRankSum=0.803;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGHEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521393    GT:AD:DP:GQ:PL    0/1:13,9:22:99:197,0,298
14    106203983    rs7141233    T    C    203.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.18;MQ0=0;QD=29.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    1/1:0,6:7:18.05:236,18,0
14    106206603    rs4774023    A    G    80.13    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.54;MQ0=3;MQRankSum=0.55;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    0/1:5,5:10:49.65:110,0,50
14    106206606    rs10149890    A    G    51.81    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.25;MQ0=3;MQRankSum=0.406;QD=5.76;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    0/1:5,4:9:52.64:82,0,53
14    106207691    rs2983752    A    C    90.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.72;MQ0=10;QD=5.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390548    GT:AD:DP:GQ:PL    1/1:0,16:16:14.98:123,15,0
14    106207763    rs12431749    G    A    587.44    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7143;MQ=20.71;MQ0=16;MQRankSum=2.237;QD=14.69;ReadPosRankSum=0.927;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390548    GT:AD:DP:GQ:PL    1/1:7,33:40:57.07:620,57,0
14    106207805    rs12880412    G    C    404.57    MQFilter40    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.461;DB;DP=80;Dels=0.0;FS=20.025;HRun=0;HaplotypeScore=0.0;MQ=18.54;MQ0=37;MQRankSum=-0.623;QD=5.06;ReadPosRankSum=-2.986;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390548    GT:AD:DP:GQ:PL    0/1:37,42:80:99:435,0,374
14    106207843    rs28562334    T    C    1441.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8947;MQ=18.29;MQ0=54;QD=12.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    1/1:0,117:117:99:1475,147,0
14    106207933    rs17841087    G    A    980.10    MQFilter40    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.538;DB;DP=155;Dels=0.0;FS=1.624;HRun=0;HaplotypeScore=4.2001;MQ=32.16;MQ0=40;MQRankSum=-4.492;QD=6.32;ReadPosRankSum=0.061;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    0/1:100,53:155:99:1010,0,1669
14    106208082    rs11621259    G    T    524.30    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=47.52;MQ0=4;MQRankSum=-7.952;QD=4.85;ReadPosRankSum=-2.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    0/1:70,38:108:99:554,0,2188
14    106208086    rs1045853    A    C    461.03    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=0.957;DB;DP=103;Dels=0.0;FS=1.951;HRun=1;HaplotypeScore=1.9628;MQ=48.71;MQ0=3;MQRankSum=-7.492;QD=4.48;ReadPosRankSum=-1.503;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    0/1:70,33:103:99:491,0,2187
14    106209031    rs10139901    G    A    300.72    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.045;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.69;MQ0=0;MQRankSum=0.162;QD=10.74;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    0/1:16,12:28:99:331,0,524
14    106209119    rs1071803    T    C    602.66    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=0.728;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.25;MQ0=3;MQRankSum=-1.38;QD=8.86;ReadPosRankSum=-1.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    0/1:41,27:68:99:633,0,1273
14    106209340    rs11552998    T    C    435.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.27;MQ0=0;QD=27.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:469,36,0
14    106209522    rs28627103    C    T    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390542    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
14    106232168    rs7150765    T    G    355.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.08;MQ0=0;MQRankSum=0.031;QD=14.81;ReadPosRankSum=2.554;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,12:24:99:385,0,339
14    106234314    rs2983772    T    C    53.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.17;MQ0=1;QD=13.44;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:86,9,0
14    106235485    rs112228168    T    C    40.90    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.596;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8723;MQ=41.95;MQ0=2;MQRankSum=-1.234;QD=1.7;ReadPosRankSum=-1.149;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,4:24:70.89:71,0,492
14    106235489    rs15979    C    T    68.13    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9782;MQ=40.95;MQ0=2;MQRankSum=-3.482;QD=2.52;ReadPosRankSum=-0.142;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,11:27:98.13:98,0,556
14    106235528    .    C    T    257.74    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.271;DP=60;Dels=0.0;FS=12.758;HRun=0;HaplotypeScore=0.0;MQ=40.83;MQ0=5;MQRankSum=-2.286;QD=4.3;ReadPosRankSum=0.373;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:41,19:60:99:288,0,1108
14    106235535    .    C    G    235.03    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.502;DP=70;Dels=0.0;FS=14.48;HRun=0;HaplotypeScore=0.0;MQ=42.44;MQ0=5;MQRankSum=-2.874;QD=3.36;ReadPosRankSum=1.725;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:50,20:70:99:265,0,1358
14    106235567    rs139488657    G    A    668.40    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=3.798;DB;DP=111;Dels=0.0;FS=10.069;HRun=0;HaplotypeScore=0.8321;MQ=42.9;MQ0=8;MQRankSum=-5.381;QD=6.02;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:65,46:111:99:698,0,1523
14    106235569    rs4042058    C    G    663.22    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=108;Dels=0.0;FS=8.07;HRun=1;HaplotypeScore=0.8321;MQ=43.13;MQ0=8;MQRankSum=-5.064;QD=6.08;ReadPosRankSum=1.18;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:64,44:108:99:693,0,1654
14    106235611    rs1051112    A    T    1562.36    HaplotypeScoreFilter13    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.86;DB;DP=133;Dels=0.0;FS=0.794;HRun=0;HaplotypeScore=15.2374;MQ=47.75;MQ0=6;MQRankSum=-8.151;QD=11.75;ReadPosRankSum=-2.102;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:59,73:133:99:1592,0,1645
14    106235766    rs78376194    G    A    413.69    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DB;DP=121;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=1.9198;MQ=48.22;MQ0=6;MQRankSum=-8.293;QD=3.42;ReadPosRankSum=0.441;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:77,44:121:99:444,0,2366
14    106235767    rs77307099    C    T    413.68    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=119;Dels=0.0;FS=1.909;HRun=1;HaplotypeScore=1.9198;MQ=48.18;MQ0=6;MQRankSum=-8.252;QD=3.48;ReadPosRankSum=0.888;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:77,42:119:99:444,0,2449
14    106236035    .    G    C    1426.82    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DP=169;Dels=0.0;FS=6.255;HRun=1;HaplotypeScore=2.7246;MQ=45.94;MQ0=6;MQRankSum=-7.087;QD=8.44;ReadPosRankSum=-0.516;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:98,71:169:99:1457,0,2817
14    106236128    rs12890621    T    A    1843.90    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=4.525;DB;DP=141;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.94;MQ0=0;MQRankSum=-1.95;QD=13.08;ReadPosRankSum=0.255;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:73,68:141:99:1874,0,2115
14    106236143    rs74093865    G    A    1956.42    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.266;DB;DP=136;Dels=0.0;FS=4.268;HRun=0;HaplotypeScore=3.0603;MQ=50.57;MQ0=0;MQRankSum=2.191;QD=14.39;ReadPosRankSum=-0.258;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:65,71:136:99:1986,0,1875
14    106236451    rs12895160    T    G    378.37    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.281;DB;DP=83;Dels=0.0;FS=22.247;HRun=0;HaplotypeScore=1.445;MQ=48.61;MQ0=0;MQRankSum=-1.796;QD=4.56;ReadPosRankSum=-1.71;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:55,28:83:99:408,0,1571
14    106236458    rs11628528    C    T    466.19    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.49;DB;DP=84;Dels=0.0;FS=22.663;HRun=0;HaplotypeScore=0.8667;MQ=46.61;MQ0=2;MQRankSum=-2.048;QD=5.55;ReadPosRankSum=-2.008;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:57,27:84:99:496,0,1497
14    106237105    rs2753552    A    G    2009.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.97;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2043,153,0
14    106237642    rs2983777    T    G    437.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=39.08;MQ0=1;QD=29.17;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHG3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:471,42,0
14    106237898    rs61985868    C    G    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
14    106304553    rs33962628    ACG    A    302.91    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=92.4391;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=-1.237;QD=18.93;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHD;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,9:16:99:342,0,283
14    106304563    rs56235597    G    A    310.77    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.95;MQ0=0;MQRankSum=-0.362;QD=16.36;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHD;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,11:19:99:341,0,192
14    106304899    rs762807    G    T    61.15    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;MQRankSum=0.358;QD=12.23;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHD;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:51.82:91,0,52
14    106306841    rs709589    C    T    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHD;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
14    106307054    rs2753491    C    G    81.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.25;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHD;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
14    106307418    rs2753492    G    A    160.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHD;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:193,15,0
14    106311374    rs2856940    A    G    223.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=27.99;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHD;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:257,21,0
14    106312113    rs76290209    A    G    271.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=16.99;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,10:16:99:302,0,198
14    106312198    rs74091832    T    C    164.81    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=18.31;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,8:9:14.23:195,0,14
14    106312199    rs77245500    G    A    147.55    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=18.44;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,7:8:18.22:178,0,18
14    106318342    rs2256593    T    C    35.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390559    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:66,0,33
14    106318440    rs2256589    T    C    493.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390559    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:526,39,0
14    106318450    rs2753504    G    A    493.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390559    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:526,39,0
14    106320284    rs2753505    A    G    129.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390559    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:162,15,0
14    106321590    rs12365    C    A    571.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390559    GT:AD:DP:GQ:PL    1/1:0,17:17:48.13:605,48,0
14    106321663    rs1059216    T    C    193.53    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=30;Dels=0.0;FS=1.596;HRun=1;HaplotypeScore=1.9226;MQ=58.45;MQ0=0;MQRankSum=-0.952;QD=6.45;ReadPosRankSum=0.334;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390559    GT:AD:DP:GQ:PL    0/1:19,11:30:99:224,0,541
14    106321913    rs1136534    G    A    394.36    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.498;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9995;MQ=52.93;MQ0=0;MQRankSum=1.008;QD=10.38;ReadPosRankSum=0.652;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGHM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390559    GT:AD:DP:GQ:PL    0/1:17,19:38:99:424,0,431
14    106329287    rs13379369    G    A    258.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=56.04;MQ0=0;MQRankSum=0.382;QD=21.53;ReadPosRankSum=1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD7-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439842    GT:AD:DP:GQ:PL    0/1:4,8:12:69.94:288,0,70
14    106329435    rs1950943    T    G    465.43    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.264;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7219;MQ=57.45;MQ0=0;MQRankSum=0.809;QD=7.89;ReadPosRankSum=-2.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD7-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439842    GT:AD:DP:GQ:PL    0/1:37,22:59:99:495,0,1240
14    106329919    rs3752943    G    A    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD7-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439842    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
14    106330126    rs3752945    C    A    36.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.3;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD7-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439842    GT:AD:DP:GQ:PL    0/1:3,2:5:66.50:66,0,92
14    106330370    rs2857384    G    A    76.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD7-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439842    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
14    106330880    rs2236228    C    T    265.31    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.185;DB;DP=23;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.523;QD=11.54;ReadPosRankSum=-0.339;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD7-27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439842    GT:AD:DP:GQ:PL    0/1:12,11:23:99:295,0,358
14    106346740    rs2244932    A    G    64.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=21.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD1-26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390567    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:97,9,0
14    106346795    rs2244930    G    T    146.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD1-26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390567    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:179,15,0
14    106346990    rs2244917    G    C    332.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=23.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD3-22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390571    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:365,30,0
14    106347085    rs2857372    A    G    202.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD3-22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390571    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:235,18,0
14    106347467    rs2516984    A    C    1329.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.99;MQ0=0;QD=28.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD3-22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390571    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1362,102,0
14    106349932    rs12587150    A    C    400.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=30.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390572    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:434,33,0
14    106350569    rs2516978    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390572    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
14    106350623    rs2753523    G    C    547.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390572    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:581,42,0
14    106350696    rs2857368    A    G    1281.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390572    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1315,108,0
14    106351952    .    G    T    36.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.08;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390572    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:66,0,33
14    106354334    rs2516973    T    C    142.54    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.0;QD=11.88;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD1-20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450276    GT:AD:DP:GQ:PL    0/1:5,7:12:99:173,0,167
14    106354353    rs2516972    C    T    606.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=30.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD1-20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450276    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:640,48,0
14    106356913    .    G    A    104.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.07;ReadPosRankSum=-2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD1-20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450276    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,111
14    106356974    rs2753529    G    C    921.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=32.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD1-20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450276    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:954,72,0
14    106359259    rs2857366    A    G    127.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390578    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
14    106359495    rs34536736    C    G    297.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.07;MQ0=2;QD=18.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390578    GT:AD:DP:GQ:PL    1/1:0,16:16:30.03:331,30,0
14    106359542    rs28406267    A    G    53.97    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.19;MQ0=3;QD=7.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390578    GT:AD:DP:GQ:PL    1/1:1,6:7:8.98:86,9,0
14    106361418    rs2753533    T    C    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_D_gene;SNPEFF_GENE_NAME=IGHD2-15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390578    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
14    106363687    rs2753538    G    C    60.53    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;MQRankSum=-1.246;QD=5.5;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL122127.25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414005    GT:AD:DP:GQ:PL    0/1:7,4:11:90.53:91,0,219
14    106378884    rs144796508    C    G    85.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AB019441.33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482999    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
14    106380174    rs2157630    C    A    160.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.91;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AB019441.33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429431    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:193,15,0
14    106452628    rs7144717    T    G    952.51    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=1.242;DB;DP=74;Dels=0.0;FS=2.759;HRun=3;HaplotypeScore=0.0;MQ=53.37;MQ0=0;MQRankSum=-4.17;QD=12.87;ReadPosRankSum=0.363;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390594    GT:AD:DP:GQ:PL    0/1:34,40:74:99:983,0,1112
14    106452817    rs1065059    A    G    1996.32    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.82;DB;DP=169;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2565;MQ=58.34;MQ0=0;MQRankSum=0.12;QD=11.81;ReadPosRankSum=0.454;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390594    GT:AD:DP:GQ:PL    0/1:93,75:169:99:2026,0,2773
14    106471095    rs1055017    C    T    89.30    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.273;QD=5.58;ReadPosRankSum=0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:12,4:16:99:119,0,452
14    106471268    rs1143505    A    G    2139.23    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.832;DB;DP=175;Dels=0.0;FS=12.897;HRun=0;HaplotypeScore=8.7121;MQ=56.29;MQ0=1;MQRankSum=-1.297;QD=12.22;ReadPosRankSum=-1.735;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:84,91:175:99:2169,0,2667
14    106471273    rs77346190    C    T    2457.20    HaplotypeScoreFilter13    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.283;DB;DP=186;Dels=0.0;FS=7.851;HRun=1;HaplotypeScore=14.6273;MQ=56.41;MQ0=1;MQRankSum=-1.758;QD=13.21;ReadPosRankSum=-1.756;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:89,97:186:99:2487,0,2724
14    106471353    rs34069216    C    T    2840.51    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.063;DB;DP=188;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9326;MQ=55.83;MQ0=2;MQRankSum=-1.066;QD=15.11;ReadPosRankSum=2.058;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:84,104:188:99:2871,0,2643
14    106471388    rs34874585    C    A    2257.10    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.07;DB;DP=160;Dels=0.0;FS=5.252;HRun=0;HaplotypeScore=6.9263;MQ=54.67;MQ0=2;MQRankSum=-3.382;QD=14.11;ReadPosRankSum=-0.273;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:75,85:160:99:2287,0,2043
14    106471528    rs35966079    C    A    974.75    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=102;Dels=0.0;FS=9.036;HRun=1;HaplotypeScore=10.8234;MQ=53.76;MQ0=1;MQRankSum=-1.836;QD=9.56;ReadPosRankSum=0.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:61,41:102:99:1005,0,1825
14    106471534    rs36065697    A    G    930.14    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=3.492;DB;DP=100;Dels=0.0;FS=4.239;HRun=1;HaplotypeScore=8.8716;MQ=53.03;MQ0=2;MQRankSum=-3.103;QD=9.3;ReadPosRankSum=0.113;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:54,41:100:99:960,0,1716
14    106471547    rs1143496    A    G    861.57    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.23;DB;DP=97;Dels=0.0;FS=1.838;HRun=2;HaplotypeScore=5.8852;MQ=52.46;MQ0=2;MQRankSum=-3.886;QD=8.88;ReadPosRankSum=0.064;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:55,42:97:99:892,0,1642
14    106471580    rs56320742    G    T    469.43    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=1.367;DB;DP=72;Dels=0.0;FS=4.201;HRun=0;HaplotypeScore=9.8528;MQ=48.61;MQ0=1;MQRankSum=-4.812;QD=6.52;ReadPosRankSum=-0.604;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:43,29:72:99:499,0,1187
14    106471581    rs56303590    C    T    478.42    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=72;Dels=0.0;FS=8.321;HRun=0;HaplotypeScore=9.8528;MQ=48.61;MQ0=1;MQRankSum=-4.913;QD=6.64;ReadPosRankSum=-0.375;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:41,29:72:99:508,0,1143
14    106471595    rs34652473    T    C    450.89    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=63;Dels=0.0;FS=6.082;HRun=1;HaplotypeScore=1.3123;MQ=46.89;MQ0=1;MQRankSum=-5.968;QD=7.16;ReadPosRankSum=-0.623;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:35,28:63:99:481,0,947
14    106471685    rs34315295    G    A    509.45    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.824;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5713;MQ=53.23;MQ0=0;MQRankSum=-2.361;QD=9.43;ReadPosRankSum=-0.347;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-2-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518843    GT:AD:DP:GQ:PL    0/1:29,25:54:99:539,0,860
14    106471873    .    T    G    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.73;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390595    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
14    106477919    rs34399539    C    G    63.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.71;MQ0=0;MQRankSum=-1.38;QD=10.53;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    0/1:2,4:6:67.19:93,0,67
14    106478053    rs139556761    C    A    402.03    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=125;Dels=0.0;FS=10.935;HRun=0;HaplotypeScore=1.6643;MQ=45.27;MQ0=6;MQRankSum=-6.102;QD=3.22;ReadPosRankSum=-1.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    0/1:93,32:125:99:432,0,2681
14    106478137    rs147818197    C    T    525.98    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=3.741;DB;DP=236;DS;Dels=0.0;FS=6.443;HRun=0;HaplotypeScore=6.8851;MQ=42.23;MQ0=26;MQRankSum=-7.265;QD=2.23;ReadPosRankSum=-0.543;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    0/1:174,62:236:99:556,0,3925
14    106478183    rs77628366    G    T    57.46    QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=157;DS;Dels=0.0;FS=14.626;HRun=1;HaplotypeScore=8.0611;MQ=45.6;MQ0=18;MQRankSum=-4.228;QD=0.37;ReadPosRankSum=-2.083;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    0/1:124,17:157:87.45:87,0,3328
14    106478194    rs76899215    C    T    273.55    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.748;DB;DP=133;DS;Dels=0.0;FS=22.735;HRun=0;HaplotypeScore=3.5474;MQ=47.8;MQ0=17;MQRankSum=-7.705;QD=2.06;ReadPosRankSum=-1.187;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    0/1:87,46:133:99:304,0,2755
14    106478401    rs78225485    G    A    304.27    MQFilter40    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.717;DB;DP=62;Dels=0.0;FS=18.859;HRun=0;HaplotypeScore=0.9665;MQ=28.88;MQ0=19;MQRankSum=0.487;QD=4.91;ReadPosRankSum=-0.743;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    0/1:43,19:62:99:334,0,601
14    106478464    rs80132192    T    C    1760.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.7206;MQ=40.79;MQ0=3;QD=26.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    1/1:4,62:66:99:1793,150,0
14    106478513    rs1141386    C    G    1416.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=35.72;MQ0=3;QD=27.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1450,123,0
14    106478560    rs56086041    T    G    574.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.68;MQ0=4;QD=20.53;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_106478494_106478603;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    1/1:1,27:28:54.12:608,54,0
14    106478563    rs55998743    G    C    551.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.99;MQ0=4;QD=21.21;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_106478494_106478603;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    1/1:1,25:26:51.12:585,51,0
14    106478637    rs4042140    G    A    228.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.29;MQ0=1;QD=28.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390596    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:261,21,0
14    106494269    rs12895651    T    C    1476.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.187;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=6.5963;MQ=57.61;MQ0=0;MQRankSum=0.177;QD=25.03;ReadPosRankSum=-1.137;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-5-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523059    GT:AD:DP:GQ:PL    1/1:2,57:59:87.61:1509,88,0
14    106494503    rs17705658    G    A    538.34    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.596;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.394;QD=13.13;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-5-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523059    GT:AD:DP:GQ:PL    0/1:22,19:41:99:568,0,528
14    106494719    rs113328667    G    A    154.20    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=19.27;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-5-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523059    GT:AD:DP:GQ:PL    0/1:3,5:8:98.97:184,0,99
14    106494738    rs7141237    C    G    174.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-5-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523059    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
14    106518184    rs79770653    G    C    113.84    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DB;DP=17;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=44.55;MQ0=1;MQRankSum=-2.011;QD=6.7;ReadPosRankSum=0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:9,8:17:99:144,0,293
14    106518191    rs75767497    C    T    114.21    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.517;DB;DP=15;Dels=0.0;FS=7.16;HRun=1;HaplotypeScore=0.0;MQ=44.19;MQ0=1;MQRankSum=-1.872;QD=7.61;ReadPosRankSum=-0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:8,7:15:99:144,0,255
14    106518236    rs2073681    G    A    121.28    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.649;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.914;MQ=41.25;MQ0=2;MQRankSum=-3.179;QD=6.06;ReadPosRankSum=0.706;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:9,11:20:99:151,0,302
14    106518307    rs56825562    A    C    312.34    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.152;DB;DP=50;Dels=0.0;FS=2.691;HRun=3;HaplotypeScore=7.0673;MQ=44.69;MQ0=3;MQRankSum=-3.647;QD=6.25;ReadPosRankSum=1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:27,23:50:99:342,0,978
14    106518315    .    A    G    169.19    HaplotypeScoreFilter13;SnpCluster    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.824;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=35.2456;MQ=44.78;MQ0=2;MQRankSum=-3.602;QD=3.13;ReadPosRankSum=0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:30,24:54:99:199,0,1099
14    106518318    .    C    T    73.64    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.108;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.0815;MQ=43.13;MQ0=2;MQRankSum=-0.408;QD=1.23;ReadPosRankSum=2.877;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:45,15:60:99:104,0,1098
14    106518319    .    C    G    70.63    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.85;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.0815;MQ=43.36;MQ0=2;MQRankSum=-0.71;QD=1.14;ReadPosRankSum=2.549;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:46,16:62:99:101,0,1145
14    106518400    rs113404618    T    C    1528.43    MQFilter40    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=0.827;DB;DP=243;Dels=0.0;FS=43.976;HRun=1;HaplotypeScore=7.2347;MQ=30.31;MQ0=64;MQRankSum=0.13;QD=6.29;ReadPosRankSum=-2.061;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:174,69:243:99:1558,0,2618
14    106518415    rs188349361    C    A    125.40    MQFilter40;QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=1.558;DB;DP=250;DS;Dels=0.0;FS=29.207;HRun=1;HaplotypeScore=3.3599;MQ=31.98;MQ0=65;MQRankSum=-1.971;QD=0.5;ReadPosRankSum=-1.23;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:206,44:250:99:155,0,4223
14    106518565    rs113460079    C    T    2813.45    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=209;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.0742;MQ=55.12;MQ0=0;MQRankSum=1.016;QD=13.46;ReadPosRankSum=0.845;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:98,111:209:99:2843,0,2764
14    106518738    rs112149134    C    A    2311.22    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.043;DB;DP=171;Dels=0.0;FS=2.826;HRun=0;HaplotypeScore=3.8383;MQ=57.23;MQ0=4;MQRankSum=0.932;QD=13.52;ReadPosRankSum=1.831;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:91,80:171:99:2341,0,2431
14    106518848    rs2073679    T    C    2652.22    HaplotypeScoreFilter13    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.467;DB;DP=166;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.2313;MQ=59.09;MQ0=0;MQRankSum=-0.203;QD=15.98;ReadPosRankSum=-0.354;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:69,97:166:99:2682,0,2130
14    106518930    rs112920599    C    T    997.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.642;DB;DP=67;Dels=0.0;FS=3.078;HRun=0;HaplotypeScore=3.8733;MQ=59.58;MQ0=0;MQRankSum=0.321;QD=14.89;ReadPosRankSum=-0.654;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_106518808_106518932;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390598    GT:AD:DP:GQ:PL    0/1:33,33:67:99:1028,0,1102
14    106552773    .    C    G    49.05    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=1.661;DP=42;Dels=0.0;FS=2.448;HRun=0;HaplotypeScore=0.0;MQ=52.66;MQ0=4;MQRankSum=-3.823;QD=1.17;ReadPosRankSum=1.341;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_106552684_106552809;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390600    GT:AD:DP:GQ:PL    0/1:33,9:42:79.05:79,0,989
14    106573248    .    C    A    206.17    HaplotypeScoreFilter13;QDFilter2    AB=0.749;AC=1;AF=0.50;AN=2;BaseQRankSum=5.703;DP=199;Dels=0.0;FS=21.135;HRun=1;HaplotypeScore=44.8136;MQ=43.29;MQ0=4;MQRankSum=-7.576;QD=1.04;ReadPosRankSum=2.698;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-11-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522733    GT:AD:DP:GQ:PL    0/1:149,50:199:99:236,0,3957
14    106573251    rs10149795    G    A    1129.55    HaplotypeScoreFilter13    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=5.948;DB;DP=199;Dels=0.0;FS=12.973;HRun=0;HaplotypeScore=44.8136;MQ=43.42;MQ0=5;MQRankSum=-11.507;QD=5.68;ReadPosRankSum=1.389;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-11-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522733    GT:AD:DP:GQ:PL    0/1:102,97:199:99:1160,0,2828
14    106573311    rs75474934    C    T    1847.76    MQRankSumFilter12_5    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=246;DS;Dels=0.0;FS=13.009;HRun=0;HaplotypeScore=7.1567;MQ=41.51;MQ0=13;MQRankSum=-12.702;QD=7.51;ReadPosRankSum=3.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-11-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522733    GT:AD:DP:GQ:PL    0/1:101,145:246:99:1878,0,3116
14    106573364    rs2003432    C    T    531.52    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=1.082;DB;DP=232;DS;Dels=0.01;FS=32.329;HRun=0;HaplotypeScore=12.7316;MQ=44.44;MQ0=2;MQRankSum=-4.459;QD=2.27;ReadPosRankSum=-1.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-11-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522733    GT:AD:DP:GQ:PL    0/1:171,60:232:99:562,0,4435
14    106573559    rs10152051    A    G    2635.95    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.858;DB;DP=180;Dels=0.0;FS=2.678;HRun=1;HaplotypeScore=2.8572;MQ=57.12;MQ0=0;MQRankSum=-2.519;QD=14.64;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-11-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522733    GT:AD:DP:GQ:PL    0/1:86,94:180:99:2666,0,2872
14    106578952    rs11160922    A    T    841.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV1-12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518307    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:875,66,0
14    106586259    rs11625174    T    G    1164.04    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=3.946;DB;DP=93;Dels=0.0;FS=2.696;HRun=1;HaplotypeScore=0.9665;MQ=58.58;MQ0=0;MQRankSum=0.128;QD=12.52;ReadPosRankSum=-0.601;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390602    GT:AD:DP:GQ:PL    0/1:53,40:93:99:1194,0,1791
14    106622428    rs111337191    A    AG    648.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=56.6811;IndelType=I;MQ=30.09;MQ0=1;QD=29.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390604    GT:AD:DP:GQ:PL    1/1:3,19:18:48.16:691,48,0
14    106641761    rs72695948    A    G    2254.71    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.453;DB;DP=165;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.051;QD=13.66;ReadPosRankSum=-3.066;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390605    GT:AD:DP:GQ:PL    0/1:81,84:165:99:2285,0,2475
14    106667902    rs58794564    A    AC    4923.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;FS=0.0;HRun=2;HaplotypeScore=323.5451;IndelType=I;MQ=46.84;MQ0=0;QD=39.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AB019440.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408253    GT:AD:DP:GQ:PL    1/1:7,118:122:99:4923,349,0
14    106668098    rs4774076    G    C    1784.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=45.07;MQ0=3;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AB019440.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408253    GT:AD:DP:GQ:PL    1/1:0,78:78:99:1817,153,0
14    106668130    rs71132083    G    GC    831.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=150.0517;IndelType=I;MQ=21.22;MQ0=2;QD=27.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AB019440.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408253    GT:AD:DP:GQ:PL    1/1:0,30:19:57.16:873,57,0
14    106668154    rs71132084    A    AC    317.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=144.5942;IndelType=I;MQ=37.21;MQ0=2;QD=15.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AB019440.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408253    GT:AD:DP:GQ:PL    1/1:6,15:12:30.09:360,30,0
14    106691430    .    G    A    80.70    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DP=22;Dels=0.0;FS=2.754;HRun=1;HaplotypeScore=0.0;MQ=54.21;MQ0=0;MQRankSum=-1.362;QD=3.67;ReadPosRankSum=1.693;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    0/1:17,5:22:99:111,0,516
14    106691444    .    A    G    86.62    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DP=23;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=0.0;MQ=53.14;MQ0=0;MQRankSum=-1.954;QD=3.77;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    0/1:17,6:23:99:117,0,499
14    106691518    rs12878231    G    C    760.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.8;MQ0=4;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    1/1:0,27:27:66.17:793,66,0
14    106691555    rs10129387    G    C    508.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.92;MQ0=9;QD=15.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    1/1:0,32:32:45.11:541,45,0
14    106691557    rs11629456    A    C    493.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.04;MQ0=9;QD=15.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    1/1:0,31:31:45.09:526,45,0
14    106691579    rs12431380    A    C    417.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=26.69;MQ0=11;QD=10.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    1/1:0,41:41:39.08:450,39,0
14    106691601    rs59323128    G    GC    445.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=4;HaplotypeScore=167.0797;IndelType=I;MQ=22.53;MQ0=10;QD=8.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    1/1:5,47:14:36.12:487,36,0
14    106691620    rs71132090    A    AC    1336.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=3;HaplotypeScore=71.9918;IndelType=I;MQ=17.13;MQ0=13;QD=18.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    1/1:8,66:33:99:1378,99,0
14    106691778    rs4470054    T    A    437.68    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.79;DB;DP=203;DS;Dels=0.0;FS=3.825;HRun=0;HaplotypeScore=0.7887;MQ=40.94;MQ0=16;MQRankSum=-6.901;QD=2.16;ReadPosRankSum=0.119;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    0/1:146,57:203:99:468,0,4342
14    106691796    .    GTAA    G    318.38    QDFilter2    AB=0.901;AC=1;AF=0.50;AN=2;BaseQRankSum=6.434;DP=179;DS;FS=6.12;HRun=0;HaplotypeScore=868.7676;IndelType=D;MQ=45.67;MQ0=14;MQRankSum=-4.979;QD=1.52;ReadPosRankSum=3.375;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390607    GT:AD:DP:GQ:PL    0/1:186,23:179:99:357,0,11065
14    106714891    rs112480427    C    G    110.85    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=50;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=1.399;MQ=51.47;MQ0=2;MQRankSum=-4.608;QD=2.22;ReadPosRankSum=-0.546;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520721    GT:AD:DP:GQ:PL    0/1:38,12:50:99:141,0,1249
14    106725090    rs11627242    C    G    242.72    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9916;MQ=60.0;MQ0=0;MQRankSum=-0.011;QD=4.76;ReadPosRankSum=0.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390609    GT:AD:DP:GQ:PL    0/1:40,11:51:99:273,0,1471
14    106725145    rs11623161    T    G    643.42    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.064;DB;DP=119;Dels=0.0;FS=7.668;HRun=0;HaplotypeScore=0.9998;MQ=59.81;MQ0=0;MQRankSum=1.148;QD=5.41;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390609    GT:AD:DP:GQ:PL    0/1:90,29:119:99:673,0,2941
14    106725797    rs76784317    T    C    409.26    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.313;QD=7.87;ReadPosRankSum=-0.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390609    GT:AD:DP:GQ:PL    0/1:37,15:52:99:439,0,1184
14    106732976    .    C    T    43.55    QDFilter2    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.904;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=52.03;MQ0=0;MQRankSum=-3.775;QD=1.89;ReadPosRankSum=-0.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:16,7:23:73.54:74,0,599
14    106732991    .    C    T    41.42    QDFilter2    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.244;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.7;MQ0=0;MQRankSum=-4.123;QD=1.43;ReadPosRankSum=0.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:21,8:29:71.41:71,0,789
14    106733001    .    C    T    62.56    QDFilter2    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.113;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.6;MQ0=0;MQRankSum=-4.609;QD=1.74;ReadPosRankSum=-0.371;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:26,10:36:92.55:93,0,995
14    106733005    .    G    T    59.55    QDFilter2    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.12;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.82;MQ0=0;MQRankSum=-4.634;QD=1.61;ReadPosRankSum=-0.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:27,10:37:89.54:90,0,1018
14    106733041    .    AG    A    40.48    QDFilter2    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=3.94;DP=57;FS=0.0;HRun=1;HaplotypeScore=683.4384;IndelType=D;MQ=54.34;MQ0=0;MQRankSum=-4.095;QD=0.69;ReadPosRankSum=0.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:46,13:57:79.51:80,0,2022
14    106733051    .    T    C    60.20    QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=0.559;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.8;MQ0=0;MQRankSum=-5.802;QD=0.97;ReadPosRankSum=-0.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:47,15:62:90.19:90,0,1796
14    106733060    .    C    G    91.25    QDFilter2    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.173;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=53.56;MQ0=0;MQRankSum=-6.151;QD=1.29;ReadPosRankSum=-1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:54,17:71:99:121,0,2028
14    106733078    .    T    C    37.07    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.927;MQ=55.35;MQ0=0;MQRankSum=-6.362;QD=0.38;ReadPosRankSum=0.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:81,17:98:67.06:67,0,2715
14    106733094    .    A    C    178.34    QDFilter2    AB=0.819;AC=1;AF=0.50;AN=2;BaseQRankSum=0.901;DP=116;Dels=0.0;FS=1.199;HRun=1;HaplotypeScore=0.9578;MQ=55.98;MQ0=0;MQRankSum=-5.961;QD=1.54;ReadPosRankSum=-1.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:95,21:116:99:208,0,3165
14    106733113    .    G    A    148    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=4.379;DP=145;Dels=0.0;FS=1.019;HRun=0;HaplotypeScore=0.9998;MQ=55.52;MQ0=0;MQRankSum=-6.406;QD=1.02;ReadPosRankSum=-2.859;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:116,29:145:99:178,0,3298
14    106733121    .    G    C    176.71    QDFilter2    AB=0.801;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DP=156;Dels=0.0;FS=1.009;HRun=0;HaplotypeScore=2.6582;MQ=55.65;MQ0=0;MQRankSum=-5.974;QD=1.13;ReadPosRankSum=-2.114;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:125,31:156:99:207,0,4187
14    106733216    .    T    C    519.21    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.835;DP=235;Dels=0.0;FS=4.608;HRun=0;HaplotypeScore=6.2559;MQ=56.42;MQ0=0;MQRankSum=-6.939;QD=2.21;ReadPosRankSum=-0.044;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:192,42:235:99:549,0,6161
14    106733223    .    T    G    357.53    QDFilter2    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.051;DP=222;Dels=0.0;FS=2.67;HRun=0;HaplotypeScore=4.6457;MQ=56.9;MQ0=0;MQRankSum=-6.113;QD=1.61;ReadPosRankSum=0.383;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:189,33:222:99:388,0,6197
14    106733228    .    C    T    276.40    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.931;DP=224;Dels=0.0;FS=2.757;HRun=1;HaplotypeScore=3.7125;MQ=57.03;MQ0=0;MQRankSum=-5.693;QD=1.23;ReadPosRankSum=-0.109;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390610    GT:AD:DP:GQ:PL    0/1:192,32:224:99:306,0,6164
14    106780647    rs112563792    A    G    145.36    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=3.751;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.6342;MQ=55.77;MQ0=1;MQRankSum=-6.985;QD=0.91;ReadPosRankSum=0.684;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390612    GT:AD:DP:GQ:PL    0/1:135,24:159:99:175,0,4584
14    106780817    rs8009554    A    C    112.97    QDFilter2    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=4.174;DB;DP=77;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7802;MQ=49.38;MQ0=1;MQRankSum=-6.37;QD=1.47;ReadPosRankSum=-1.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-28-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519887    GT:AD:DP:GQ:PL    0/1:58,19:77:99:143,0,1886
14    106791006    rs10148365    C    T    5386.14    PASS    AB=0.281;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.687;DB;DP=249;DS;Dels=0.0;FS=2.124;HRun=1;HaplotypeScore=11.328;MQ=54.13;MQ0=2;MQRankSum=1.229;QD=21.63;ReadPosRankSum=1.122;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390613    GT:AD:DP:GQ:PL    0/1:70,179:249:99:5386,0,1779
14    106791119    rs4502119    A    G    1454.78    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.549;DB;DP=250;DS;Dels=0.0;FS=10.065;HRun=0;HaplotypeScore=3.4764;MQ=53.88;MQ0=0;MQRankSum=-1.058;QD=5.82;ReadPosRankSum=3.367;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390613    GT:AD:DP:GQ:PL    0/1:190,60:250:99:1485,0,6360
14    106791131    rs10148460    A    G    1535.10    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=5.689;DB;DP=244;DS;Dels=0.0;FS=10.141;HRun=0;HaplotypeScore=0.0;MQ=54.46;MQ0=0;MQRankSum=1.429;QD=6.29;ReadPosRankSum=1.824;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390613    GT:AD:DP:GQ:PL    0/1:183,61:244:99:1565,0,5713
14    106791479    .    C    A    39.37    MQFilter40;QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DP=217;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.53;MQ0=203;MQRankSum=0.934;QD=0.18;ReadPosRankSum=0.778;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520707    GT:AD:DP:GQ:PL    0/1:185,32:217:69.37:69,0,190
14    106804939    rs7155983    C    T    74.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-0.727;QD=18.59;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:104,0,31
14    106804999    rs59137420    G    T    85.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.998;MQ=48.73;MQ0=0;MQRankSum=-0.956;QD=7.79;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:3,5:11:99:116,0,104
14    106805044    rs61995640    T    A    324.74    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.72;MQ0=0;MQRankSum=0.157;QD=11.2;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:18,11:29:99:355,0,492
14    106805111    rs61743763    G    A    699.79    HaplotypeScoreFilter13    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=7.041;DB;DP=112;Dels=0.0;FS=5.19;HRun=0;HaplotypeScore=16.1992;MQ=46.56;MQ0=1;MQRankSum=-2.772;QD=6.25;ReadPosRankSum=-0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:76,35:112:99:730,0,1934
14    106805135    rs61742559    C    A    602    HaplotypeScoreFilter13;SnpCluster    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=2.303;DB;DP=137;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=30.5152;MQ=47.19;MQ0=2;MQRankSum=-4.17;QD=4.39;ReadPosRankSum=0.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:100,36:137:99:632,0,3129
14    106805143    rs61742556    C    G    458.54    HaplotypeScoreFilter13;SnpCluster    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.381;DB;DP=159;Dels=0.0;FS=1.622;HRun=1;HaplotypeScore=17.7054;MQ=47.16;MQ0=3;MQRankSum=-5.099;QD=2.88;ReadPosRankSum=0.967;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:120,38:159:99:489,0,3666
14    106805145    rs61742555    C    T    483.06    HaplotypeScoreFilter13;SnpCluster    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.305;DB;DP=161;Dels=0.0;FS=3.386;HRun=0;HaplotypeScore=16.9715;MQ=47.14;MQ0=3;MQRankSum=-5.253;QD=3.0;ReadPosRankSum=1.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:122,39:161:99:513,0,3756
14    106805212    rs61740545    C    G    2317.53    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.539;DB;DP=250;DS;Dels=0.0;FS=20.289;HRun=1;HaplotypeScore=5.0604;MQ=53.51;MQ0=4;MQRankSum=-6.469;QD=9.27;ReadPosRankSum=-0.192;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:149,101:250:99:2348,0,4547
14    106805236    rs61740539    C    T    1785.07    HaplotypeScoreFilter13    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=2.644;DB;DP=247;DS;Dels=0.0;FS=8.459;HRun=0;HaplotypeScore=19.4901;MQ=54.0;MQ0=3;MQRankSum=-5.013;QD=7.23;ReadPosRankSum=2.442;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:167,80:247:99:1815,0,4892
14    106805278    rs61739320    A    G    1621.51    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.239;DB;DP=179;DS;Dels=0.0;FS=4.873;HRun=1;HaplotypeScore=9.2697;MQ=54.6;MQ0=1;MQRankSum=-6.026;QD=9.06;ReadPosRankSum=-0.817;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:105,74:179:99:1652,0,3479
14    106805381    rs77489245    T    G    836.91    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=4.246;DB;DP=150;Dels=0.0;FS=1.634;HRun=3;HaplotypeScore=9.9861;MQ=56.52;MQ0=1;MQRankSum=-1.965;QD=5.58;ReadPosRankSum=1.082;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:108,42:150:99:867,0,3366
14    106805395    rs61995641    G    A    722.61    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=140;Dels=0.0;FS=1.72;HRun=1;HaplotypeScore=7.9866;MQ=55.89;MQ0=0;MQRankSum=1.001;QD=5.16;ReadPosRankSum=0.325;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:108,32:140:99:753,0,3299
14    106805408    rs61995642    C    T    701.65    PASS    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6542;MQ=56.06;MQ0=0;MQRankSum=0.166;QD=4.81;ReadPosRankSum=-0.271;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    0/1:112,33:145:99:732,0,3419
14    106805440    rs6576153    A    G    4389.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9427;MQ=52.21;MQ0=1;QD=33.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4390,340,0
14    106805508    rs4462488    G    A    2931.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=43.09;MQ0=6;QD=27.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438142    GT:AD:DP:GQ:PL    1/1:0,107:107:99:2964,256,0
14    106805729    rs111595338    T    C    61.57    QDFilter2    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=0.493;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.45;MQ0=3;MQRankSum=-1.633;QD=1.81;ReadPosRankSum=-0.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-31-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521012    GT:AD:DP:GQ:PL    0/1:25,9:34:91.56:92,0,861
14    106805772    rs3858876    C    G    573    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=43.64;MQ0=1;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-31-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521012    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:606,48,0
14    106805829    rs2015688    G    A    110.49    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.25;MQ0=2;MQRankSum=0.72;QD=13.81;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-31-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521012    GT:AD:DP:GQ:PL    0/1:4,4:8:61.95:140,0,62
14    106815662    rs61997385    G    C    1959.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.02;FS=0.0;HRun=3;HaplotypeScore=1.8317;MQ=50.42;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390615    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1992,162,0
14    106845144    rs10129975    C    A    102.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=21.51;MQ0=0;QD=17.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390617    GT:AD:DP:GQ:PL    1/1:0,6:6:14.98:135,15,0
14    106845193    rs10129987    C    G    163.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.27;MQ0=0;QD=18.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390617    GT:AD:DP:GQ:PL    1/1:0,9:9:20.99:196,21,0
14    106845209    rs10129994    C    G    336.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.28;MQ0=0;QD=24.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390617    GT:AD:DP:GQ:PL    1/1:0,14:14:36.03:369,36,0
14    106859131    rs61997353    G    C    47.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=15;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=52.8;MQ0=2;MQRankSum=0.085;QD=3.15;ReadPosRankSum=1.437;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,5:15:77.31:77,0,338
14    106859351    rs1008525    G    C    1123.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.4;MQ0=10;QD=21.6;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1156,99,0
14    106866163    rs11625176    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390618    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
14    106866565    rs58308167    C    A    2210.14    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.82;DB;DP=170;Dels=0.0;FS=2.701;HRun=0;HaplotypeScore=3.4838;MQ=59.3;MQ0=0;MQRankSum=0.379;QD=13.0;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390618    GT:AD:DP:GQ:PL    0/1:86,84:170:99:2240,0,2680
14    106877519    rs11847538    A    G    163.74    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.834;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=52.54;MQ0=0;MQRankSum=-4.534;QD=4.31;ReadPosRankSum=1.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390619    GT:AD:DP:GQ:PL    0/1:25,13:38:99:194,0,851
14    106877535    rs73367258    C    G    130.42    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.085;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9542;MQ=53.14;MQ0=0;MQRankSum=-3.031;QD=2.66;ReadPosRankSum=1.665;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390619    GT:AD:DP:GQ:PL    0/1:38,11:49:99:160,0,1283
14    106877551    rs8020298    A    C    1444.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=11.5318;MQ=53.7;MQ0=0;QD=23.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390619    GT:AD:DP:GQ:PL    1/1:0,53:62:99:1477,111,0
14    106877562    .    A    C    241.57    HaplotypeScoreFilter13    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=1.101;DP=80;Dels=0.0;FS=2.204;HRun=1;HaplotypeScore=25.1495;MQ=49.57;MQ0=2;MQRankSum=-3.389;QD=3.02;ReadPosRankSum=-1.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390619    GT:AD:DP:GQ:PL    0/1:63,17:80:99:272,0,1839
14    106877591    .    G    C    688.84    HaplotypeScoreFilter13    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DP=124;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=14.7143;MQ=49.27;MQ0=4;MQRankSum=-3.106;QD=5.56;ReadPosRankSum=1.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390619    GT:AD:DP:GQ:PL    0/1:93,31:124:99:719,0,2456
14    106877618    rs11847658    G    C    30.76    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.795;DB;DP=147;Dels=0.0;FS=10.199;HRun=0;HaplotypeScore=2.7619;MQ=49.41;MQ0=6;MQRankSum=-7.041;QD=0.21;ReadPosRankSum=0.641;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390619    GT:AD:DP:GQ:PL    0/1:119,28:147:60.75:61,0,3406
14    106877637    rs11847603    A    G    1196.72    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.277;DB;DP=165;Dels=0.0;FS=0.662;HRun=1;HaplotypeScore=6.3575;MQ=49.07;MQ0=8;MQRankSum=-9.171;QD=7.25;ReadPosRankSum=1.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:86,78:165:99:1227,0,2560
14    106877700    rs11847691    G    T    1327.65    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=154;Dels=0.0;FS=0.705;HRun=0;HaplotypeScore=3.5757;MQ=48.7;MQ0=11;MQRankSum=-8.77;QD=8.62;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:82,72:154:99:1358,0,2539
14    106877753    rs35281264    A    G    1121.40    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=129;Dels=0.0;FS=6.21;HRun=0;HaplotypeScore=3.7744;MQ=50.54;MQ0=2;MQRankSum=-7.092;QD=8.69;ReadPosRankSum=1.714;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:73,56:129:99:1151,0,2267
14    106877796    rs34195693    G    C    497.12    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=84;Dels=0.0;FS=2.041;HRun=1;HaplotypeScore=0.9665;MQ=51.71;MQ0=0;MQRankSum=-5.745;QD=5.92;ReadPosRankSum=-2.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:52,32:84:99:527,0,1671
14    106877818    .    CTA    C    199.45    PASS    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=5.25;DP=59;FS=0.0;HRun=0;HaplotypeScore=389.9563;IndelType=D;MQ=53.0;MQ0=0;MQRankSum=-5.288;QD=3.22;ReadPosRankSum=-0.701;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:50,12:59:99:238,0,2464
14    106877821    .    CT    C    113.55    QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=4.962;DP=59;FS=0.0;HRun=1;HaplotypeScore=385.6364;IndelType=D;MQ=52.5;MQ0=0;MQRankSum=-5.207;QD=1.83;ReadPosRankSum=-0.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:50,12:59:99:153,0,1921
14    106877849    rs113422537    T    C    87.14    QDFilter2    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.845;DB;DP=73;Dels=0.0;FS=1.314;HRun=0;HaplotypeScore=1.9955;MQ=51.28;MQ0=0;MQRankSum=-6.73;QD=1.19;ReadPosRankSum=-0.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:50,23:73:99:117,0,1545
14    106877912    rs74093494    G    C    229.05    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.969;DB;DP=61;Dels=0.0;FS=12.31;HRun=1;HaplotypeScore=0.0;MQ=50.88;MQ0=0;MQRankSum=-3.674;QD=3.75;ReadPosRankSum=2.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:45,16:61:99:259,0,1479
14    106877945    rs117765373    A    T    268.60    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=45;Dels=0.0;FS=8.931;HRun=0;HaplotypeScore=2.6808;MQ=51.75;MQ0=0;MQRankSum=-4.336;QD=5.97;ReadPosRankSum=-1.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:29,15:45:99:299,0,870
14    106877947    rs73367262    A    G    261.71    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.213;DB;DP=46;Dels=0.0;FS=8.845;HRun=1;HaplotypeScore=2.6808;MQ=52.64;MQ0=0;MQRankSum=-3.848;QD=5.69;ReadPosRankSum=-0.833;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:32,14:46:99:292,0,955
14    106877969    rs149317298    AG    A    141.11    PASS    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=4.052;DB;DP=37;FS=0.0;HRun=1;HaplotypeScore=290.7439;IndelType=D;MQ=54.94;MQ0=0;MQRankSum=-4.091;QD=3.81;ReadPosRankSum=0.873;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:30,7:37:99:180,0,1329
14    106877983    rs116371596    C    T    56.82    QDFilter2;SnpCluster    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.679;DB;DP=37;Dels=0.0;FS=2.301;HRun=1;HaplotypeScore=0.8667;MQ=54.94;MQ0=0;MQRankSum=-4.077;QD=1.54;ReadPosRankSum=-1.999;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:30,7:37:86.81:87,0,968
14    106877986    rs138877885    T    C    57.75    QDFilter2;SnpCluster    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.113;DB;DP=38;Dels=0.0;FS=2.37;HRun=0;HaplotypeScore=0.0;MQ=55.08;MQ0=0;MQRankSum=-4.091;QD=1.52;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:31,7:38:87.75:88,0,973
14    106877992    rs149478092    C    G    59.83    QDFilter2;SnpCluster    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.756;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.42;MQ0=0;MQRankSum=-3.975;QD=1.57;ReadPosRankSum=-2.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:31,7:38:89.83:90,0,925
14    106878038    rs113208890    G    A    63.78    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.298;DB;DP=36;Dels=0.0;FS=7.258;HRun=2;HaplotypeScore=0.734;MQ=53.94;MQ0=0;MQRankSum=-4.046;QD=1.77;ReadPosRankSum=0.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:28,7:36:93.77:94,0,886
14    106878056    rs4774113    T    G    112.11    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=31;Dels=0.0;FS=2.354;HRun=0;HaplotypeScore=0.6651;MQ=52.21;MQ0=0;MQRankSum=-3.995;QD=3.62;ReadPosRankSum=0.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:23,8:31:99:142,0,757
14    106878067    rs4774114    T    G    60.99    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=2.185;DB;DP=27;Dels=0.0;FS=2.737;HRun=1;HaplotypeScore=1.4538;MQ=51.95;MQ0=0;MQRankSum=-3.845;QD=2.26;ReadPosRankSum=0.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:20,7:27:90.98:91,0,627
14    106878071    rs4774115    A    G    57.98    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=27;Dels=0.0;FS=2.682;HRun=1;HaplotypeScore=3.2363;MQ=51.95;MQ0=0;MQRankSum=-3.735;QD=2.15;ReadPosRankSum=0.526;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:20,7:27:87.97:88,0,654
14    106878131    rs34777410    G    T    80.22    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=48.93;MQ0=0;MQRankSum=-2.52;QD=7.29;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520963    GT:AD:DP:GQ:PL    0/1:7,4:11:99:110,0,222
14    106926025    rs17112772    T    C    74.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434710    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
14    106926064    rs61999674    G    A    535.70    PASS    AB=0.19;AC=1;AF=0.50;AN=2;BaseQRankSum=1.654;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=-0.142;QD=25.51;ReadPosRankSum=2.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434710    GT:AD:DP:GQ:PL    0/1:4,17:21:99:566,0,103
14    106926107    rs7401587    T    C    2073.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=57.5;MQ0=0;QD=36.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434710    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2107,160,0
14    106926145    rs7401516    C    G    1123.90    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=94;Dels=0.0;FS=4.677;HRun=1;HaplotypeScore=1.367;MQ=58.31;MQ0=0;MQRankSum=1.067;QD=11.83;ReadPosRankSum=0.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434710    GT:AD:DP:GQ:PL    0/1:54,40:94:99:1154,0,1607
14    106926167    rs7401540    G    A    1289.90    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.865;DB;DP=108;Dels=0.0;FS=10.382;HRun=0;HaplotypeScore=1.8332;MQ=57.53;MQ0=0;MQRankSum=0.389;QD=11.94;ReadPosRankSum=-0.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434710    GT:AD:DP:GQ:PL    0/1:61,47:108:99:1320,0,1618
14    106926176    rs7401517    C    T    1243.24    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=0.057;DB;DP=112;Dels=0.0;FS=8.714;HRun=0;HaplotypeScore=3.3694;MQ=57.62;MQ0=0;MQRankSum=0.459;QD=11.1;ReadPosRankSum=0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434710    GT:AD:DP:GQ:PL    0/1:66,46:112:99:1273,0,2030
14    106926223    rs2467912    T    C    2045.91    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.35;DB;DP=165;Dels=0.0;FS=5.743;HRun=0;HaplotypeScore=0.9958;MQ=57.84;MQ0=0;MQRankSum=0.664;QD=12.4;ReadPosRankSum=-0.932;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:90,74:165:99:2076,0,2780
14    106926287    rs2467911    G    A    2240.25    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.559;DB;DP=172;Dels=0.0;FS=1.893;HRun=0;HaplotypeScore=1.8664;MQ=58.78;MQ0=0;MQRankSum=0.652;QD=13.02;ReadPosRankSum=-1.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:89,83:172:99:2270,0,2780
14    106926328    rs61999676    A    C    2297.01    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=146;Dels=0.0;FS=0.624;HRun=3;HaplotypeScore=3.0088;MQ=57.82;MQ0=0;MQRankSum=-1.852;QD=15.73;ReadPosRankSum=-1.975;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:67,79:146:99:2327,0,2113
14    106926362    rs61999677    C    T    2135.77    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=5.203;DB;DP=146;Dels=0.0;FS=1.333;HRun=0;HaplotypeScore=1.79;MQ=56.82;MQ0=0;MQRankSum=-2.434;QD=14.63;ReadPosRankSum=2.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:72,74:146:99:2166,0,2060
14    106926388    rs2467910    T    C    5055.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.849;MQ=55.61;MQ0=0;QD=33.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    1/1:0,151:151:99:5055,388,0
14    106926456    rs79008247    A    C    1298.08    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=139;Dels=0.0;FS=5.749;HRun=1;HaplotypeScore=4.104;MQ=52.89;MQ0=0;MQRankSum=-5.868;QD=9.34;ReadPosRankSum=2.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:78,61:139:99:1328,0,2249
14    106926515    rs75166537    C    A    520.57    SnpCluster    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=124;Dels=0.0;FS=9.396;HRun=0;HaplotypeScore=3.2817;MQ=49.07;MQ0=0;MQRankSum=-7.872;QD=4.2;ReadPosRankSum=-1.602;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:80,44:124:99:551,0,2441
14    106926516    rs77723961    T    A    526.05    SnpCluster    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=3.868;DB;DP=124;Dels=0.0;FS=9.396;HRun=0;HaplotypeScore=3.2817;MQ=49.07;MQ0=0;MQRankSum=-8.203;QD=4.24;ReadPosRankSum=-1.496;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:79,45:124:99:556,0,2426
14    106926524    rs78205365    C    A    422.32    SnpCluster    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.6;DB;DP=123;Dels=0.0;FS=4.488;HRun=1;HaplotypeScore=2.6166;MQ=49.68;MQ0=1;MQRankSum=-7.68;QD=3.43;ReadPosRankSum=0.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:82,40:123:99:452,0,2518
14    106926536    rs75638554    T    A    510.60    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=3.654;DB;DP=126;Dels=0.0;FS=1.802;HRun=1;HaplotypeScore=0.8941;MQ=50.53;MQ0=1;MQRankSum=-7.622;QD=4.05;ReadPosRankSum=0.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:83,43:126:99:541,0,2675
14    106926649    rs61999678    C    A    3827.98    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=105.2972;MQ=54.65;MQ0=1;MQRankSum=-0.558;QD=31.38;ReadPosRankSum=1.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    1/1:1,121:122:99:3828,248,0
14    106926651    rs142878466    TTC    T    1816.82    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=7.816;DB;DP=112;FS=6.078;HRun=0;HaplotypeScore=845.3385;IndelType=D;MQ=54.7;MQ0=1;MQRankSum=0.086;QD=15.27;ReadPosRankSum=0.695;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:66,53:112:99:1856,0,2680
14    106926714    rs2467909    C    T    851.86    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=3.307;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.0508;MQ=52.69;MQ0=4;MQRankSum=0.312;QD=11.36;ReadPosRankSum=-2.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:43,32:75:99:882,0,1107
14    106926808    rs2467908    A    G    128.05    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=-0.555;QD=9.85;ReadPosRankSum=-1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    0/1:6,7:13:99:158,0,219
14    106926878    rs2427701    C    T    33.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVII-43-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522649    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
14    106937400    rs10134807    T    A    111.89    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.181;QD=6.22;ReadPosRankSum=-0.181;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521827    GT:AD:DP:GQ:PL    0/1:11,7:18:99:142,0,388
14    106939783    rs2013024    G    C    194.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=44.59;MQ0=0;QD=32.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334298    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:228,18,0
14    106940006    rs6576178    G    T    228.22    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.926;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8561;MQ=53.6;MQ0=0;MQRankSum=-2.178;QD=7.61;ReadPosRankSum=0.682;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334298    GT:AD:DP:GQ:PL    0/1:20,10:30:99:258,0,605
14    106940306    rs1557583    A    C    65.52    QDFilter2    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.083;DB;DP=84;Dels=0.0;FS=7.246;HRun=0;HaplotypeScore=0.9578;MQ=51.73;MQ0=9;MQRankSum=-4.926;QD=0.78;ReadPosRankSum=-0.366;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334298    GT:AD:DP:GQ:PL    0/1:64,20:84:95.52:96,0,2166
14    106940351    rs142032068    C    T    229.13    QDFilter2    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.551;DB;DP=122;Dels=0.0;FS=25.648;HRun=0;HaplotypeScore=1.6643;MQ=49.89;MQ0=11;MQRankSum=-7.893;QD=1.88;ReadPosRankSum=-0.567;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334298    GT:AD:DP:GQ:PL    0/1:83,39:122:99:259,0,2622
14    106962749    rs2467896    G    A    66.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.26;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390621    GT:AD:DP:GQ:PL    0/1:5,3:8:96.04:96,0,177
14    106962779    rs2467897    G    A    84.77    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.415;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.11;QD=5.65;ReadPosRankSum=1.632;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390621    GT:AD:DP:GQ:PL    0/1:11,4:15:99:115,0,324
14    106963101    rs7141669    C    T    1399.36    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=88;Dels=0.0;FS=0.854;HRun=0;HaplotypeScore=1.7987;MQ=59.48;MQ0=0;MQRankSum=-0.399;QD=15.9;ReadPosRankSum=1.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390622    GT:AD:DP:GQ:PL    0/1:40,47:88:99:1429,0,1198
14    106963326    rs12884037    G    A    1164.71    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.729;DB;DP=85;Dels=0.0;FS=1.814;HRun=0;HaplotypeScore=1.8808;MQ=60.0;MQ0=0;MQRankSum=-0.804;QD=13.7;ReadPosRankSum=2.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390622    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1195,0,1336
14    106966894    rs2073676    A    C    504.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.504;QD=31.54;ReadPosRankSum=1.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390622    GT:AD:DP:GQ:PL    1/1:1,15:16:5.13:536,5,0
14    106974556    rs61996504    T    A    3708.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6336;MQ=59.79;MQ0=0;QD=34.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425060    GT:AD:DP:GQ:PL    1/1:1,107:108:99:3709,274,0
14    106974665    rs35455417    G    A    4829.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5594;MQ=58.65;MQ0=0;MQRankSum=-0.28;QD=35.0;ReadPosRankSum=1.426;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425060    GT:AD:DP:GQ:PL    1/1:1,137:138:99:4830,335,0
14    106974701    rs35202628    A    G    4892.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425060    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4892,376,0
14    106974744    rs36100449    T    G    4268.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.569;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4565;MQ=59.39;MQ0=0;MQRankSum=-1.163;QD=28.08;ReadPosRankSum=-0.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425060    GT:AD:DP:GQ:PL    1/1:1,150:151:99:4268,316,0
14    106974828    rs34580689    A    C    3468.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.0316;MQ=59.19;MQ0=0;QD=30.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425060    GT:AD:DP:GQ:PL    1/1:0,113:114:99:3469,295,0
14    106974831    rs35221693    A    G    3513.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4533;MQ=59.16;MQ0=0;QD=31.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425060    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3514,298,0
14    106993543    .    TTA    T    118.17    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DP=17;FS=2.963;HRun=0;HaplotypeScore=102.9043;IndelType=D;MQ=51.3;MQ0=0;MQRankSum=-0.061;QD=6.57;ReadPosRankSum=2.388;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    0/1:13,5:17:99:157,0,121
14    106993544    rs61344213    TAA    T    239.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=17;FS=0.0;HRun=13;HaplotypeScore=91.7245;IndelType=D;MQ=51.3;MQ0=0;MQRankSum=-1.488;QD=13.29;ReadPosRankSum=1.488;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    1/1:8,10:17:11.67:281,12,0
14    106993613    .    G    A    37.52    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.646;DP=18;Dels=0.0;FS=10.386;HRun=1;HaplotypeScore=0.0;MQ=45.66;MQ0=0;MQRankSum=-1.752;QD=2.08;ReadPosRankSum=-0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    0/1:14,4:18:67.51:68,0,487
14    106993637    rs7148047    T    C    267.62    MQFilter40    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=23;Dels=0.0;FS=9.944;HRun=3;HaplotypeScore=4.8239;MQ=37.94;MQ0=0;MQRankSum=0.742;QD=11.64;ReadPosRankSum=-0.484;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    0/1:8,15:23:99:298,0,180
14    106993659    rs76656258    C    A    69.54    MQFilter40    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.575;DB;DP=23;Dels=0.0;FS=2.667;HRun=0;HaplotypeScore=4.894;MQ=35.31;MQ0=1;MQRankSum=0.894;QD=3.02;ReadPosRankSum=1.064;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    0/1:18,5:23:99:100,0,392
14    106993722    rs7148082    T    C    143.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=27.52;MQ0=2;QD=9.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    1/1:0,15:15:17.99:177,18,0
14    106993734    rs7146933    C    G    33.49    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.66;MQ0=2;MQRankSum=0.988;QD=3.72;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    0/1:6,3:9:27.95:63,0,28
14    106993757    rs74323970    C    G    187.06    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.076;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9119;MQ=21.84;MQ0=7;MQRankSum=-0.269;QD=7.79;ReadPosRankSum=-1.345;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    1/1:3,21:24:21.04:220,21,0
14    106993798    rs7146961    C    T    138.72    MQFilter40    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.39;DB;DP=44;Dels=0.0;FS=9.756;HRun=1;HaplotypeScore=0.0;MQ=20.79;MQ0=13;MQRankSum=-0.644;QD=3.15;ReadPosRankSum=-2.432;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    0/1:25,19:44:99:169,0,251
14    106993829    rs7147125    C    A    292.44    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=62;Dels=0.0;FS=1.706;HRun=1;HaplotypeScore=0.8941;MQ=21.81;MQ0=14;MQRankSum=-1.247;QD=4.72;ReadPosRankSum=0.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    0/1:36,26:62:99:322,0,352
14    106993845    rs7148408    T    G    801.25    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.51;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.89;MQ0=10;MQRankSum=-1.732;QD=13.14;ReadPosRankSum=-1.393;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    1/1:1,60:61:45.34:834,45,0
14    106993886    rs7146990    A    G    1471.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=24.02;MQ0=11;QD=17.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    1/1:3,79:82:99:1505,150,0
14    106993945    rs7148607    T    C    2528.44    FSFilter60;HaplotypeScoreFilter13;MQFilter40    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=2.511;DB;DP=147;Dels=0.0;FS=78.049;HRun=1;HaplotypeScore=28.3317;MQ=32.61;MQ0=19;MQRankSum=1.957;QD=17.2;ReadPosRankSum=-2.453;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    0/1:38,109:147:99:2558,0,189
14    106994015    rs34891277    G    A    4559.56    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.153;DB;DP=184;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.0754;MQ=37.01;MQ0=8;MQRankSum=0.82;QD=24.78;ReadPosRankSum=-0.387;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    1/1:6,177:184:99:4560,315,0
14    106994063    rs4774148    C    T    3508.18    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.188;DB;DP=193;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.0281;MQ=33.46;MQ0=21;MQRankSum=3.852;QD=18.18;ReadPosRankSum=-1.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390624    GT:AD:DP:GQ:PL    1/1:31,162:193:99:3508,167,0
14    107012766    rs2583348    C    T    158.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390625    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
14    107012852    rs2583349    G    T    829.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390625    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:862,66,0
14    107012917    rs2073675    T    C    1926.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390625    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1959,144,0
14    107013129    rs2073674    A    C    4638.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.3228;MQ=59.59;MQ0=0;QD=31.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390625    GT:AD:DP:GQ:PL    1/1:0,147:147:99:4638,358,0
14    107034624    rs2073672    A    G    480.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.61;MQ0=0;QD=25.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV5-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390626    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:514,45,0
14    107034652    .    A    T    58.94    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.757;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.38;MQ0=0;MQRankSum=-3.879;QD=2.03;ReadPosRankSum=-0.805;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV5-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390626    GT:AD:DP:GQ:PL    0/1:21,8:29:88.93:89,0,737
14    107034659    .    A    G    52.91    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.14;MQ0=0;MQRankSum=-4.2;QD=1.65;ReadPosRankSum=-0.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV5-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390626    GT:AD:DP:GQ:PL    0/1:24,8:32:82.90:83,0,830
14    107034679    .    C    T    84.87    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.129;DP=38;Dels=0.0;FS=5.682;HRun=0;HaplotypeScore=0.734;MQ=54.28;MQ0=0;MQRankSum=-3.54;QD=2.23;ReadPosRankSum=-1.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV5-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390626    GT:AD:DP:GQ:PL    0/1:28,10:38:99:115,0,1001
14    107034681    .    G    C    86.91    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.547;DP=38;Dels=0.0;FS=5.563;HRun=0;HaplotypeScore=0.734;MQ=54.28;MQ0=0;MQRankSum=-3.126;QD=2.29;ReadPosRankSum=-1.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV5-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390626    GT:AD:DP:GQ:PL    0/1:28,10:38:99:117,0,960
14    107034705    .    G    A    205.46    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=3.898;DP=51;Dels=0.0;FS=8.541;HRun=0;HaplotypeScore=1.5115;MQ=55.31;MQ0=0;MQRankSum=-2.575;QD=4.03;ReadPosRankSum=-0.882;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV5-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390626    GT:AD:DP:GQ:PL    0/1:37,14:51:99:235,0,1001
14    107034707    .    G    T    198.72    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.144;DP=50;Dels=0.0;FS=8.772;HRun=0;HaplotypeScore=1.5115;MQ=55.21;MQ0=0;MQRankSum=-3.023;QD=3.97;ReadPosRankSum=-0.645;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV5-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390626    GT:AD:DP:GQ:PL    0/1:37,13:50:99:229,0,1164
14    107034789    rs72686840    G    A    292.04    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.396;DB;DP=78;Dels=0.0;FS=6.5;HRun=0;HaplotypeScore=0.0;MQ=55.97;MQ0=0;MQRankSum=-2.78;QD=3.74;ReadPosRankSum=-0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-51-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519403    GT:AD:DP:GQ:PL    0/1:63,15:78:99:322,0,1812
14    107034807    rs72686841    G    A    163.54    PASS    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=0.425;DB;DP=73;Dels=0.0;FS=3.182;HRun=0;HaplotypeScore=0.0;MQ=55.96;MQ0=0;MQRankSum=-3.323;QD=2.24;ReadPosRankSum=-0.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-51-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519403    GT:AD:DP:GQ:PL    0/1:60,13:73:99:194,0,1795
14    107034822    .    C    G    32.48    QDFilter2    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.928;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=56.26;MQ0=0;MQRankSum=-4.169;QD=0.49;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-51-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519403    GT:AD:DP:GQ:PL    0/1:56,9:66:62.47:62,0,1756
14    107048394    rs2583344    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
14    107048513    rs2956475    A    G    98.49    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.3;MQ0=0;MQRankSum=0.876;QD=10.94;ReadPosRankSum=-1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:4,5:9:99:128,0,135
14    107048608    rs60624622    TCC    T    643.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=6;HaplotypeScore=126.7133;IndelType=D;MQ=34.36;MQ0=7;QD=19.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    1/1:0,33:20:54.09:686,54,0
14    107048654    rs8012872    A    G    445.26    MQFilter40    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8627;MQ=28.54;MQ0=6;MQRankSum=-0.194;QD=7.95;ReadPosRankSum=1.785;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:29,27:56:99:475,0,486
14    107048656    rs2427705    T    C    477.86    MQFilter40    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=62;Dels=0.0;FS=2.714;HRun=1;HaplotypeScore=2.8627;MQ=30.23;MQ0=6;MQRankSum=0.221;QD=7.71;ReadPosRankSum=1.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:32,30:62:99:508,0,579
14    107048702    rs2072047    G    A    617.08    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=4.89;DB;DP=128;Dels=0.0;FS=5.775;HRun=0;HaplotypeScore=0.8667;MQ=33.09;MQ0=14;MQRankSum=-1.333;QD=4.82;ReadPosRankSum=1.321;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:88,40:128:99:647,0,1653
14    107048749    rs11627238    C    G    546.08    MQFilter40    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.021;DB;DP=183;Dels=0.0;FS=7.733;HRun=0;HaplotypeScore=0.8321;MQ=33.59;MQ0=15;MQRankSum=-2.724;QD=2.98;ReadPosRankSum=-1.147;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:136,47:183:99:576,0,3146
14    107048767    .    G    T    732.92    MQFilter40    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=7.041;DP=216;Dels=0.0;FS=2.321;HRun=0;HaplotypeScore=2.5439;MQ=32.46;MQ0=13;MQRankSum=-3.404;QD=3.39;ReadPosRankSum=-0.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:157,59:216:99:763,0,3672
14    107048885    .    C    T    178.29    MQFilter40;QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.07;DP=208;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0724;MQ=19.63;MQ0=66;MQRankSum=-0.542;QD=0.86;ReadPosRankSum=-0.868;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:160,48:208:99:208,0,1842
14    107048929    rs35608607    T    C    1024.19    HaplotypeScoreFilter13;MQFilter40    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=1.802;DB;DP=209;DS;Dels=0.0;FS=0.866;HRun=1;HaplotypeScore=26.2684;MQ=18.01;MQ0=72;MQRankSum=-0.851;QD=4.9;ReadPosRankSum=-0.746;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:90,119:209:99:1054,0,821
14    107048944    rs35850880    A    T    689.30    HaplotypeScoreFilter13;MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=1.19;DB;DP=205;DS;Dels=0.0;FS=0.88;HRun=0;HaplotypeScore=25.6951;MQ=18.23;MQ0=73;MQRankSum=0.797;QD=3.35;ReadPosRankSum=0.302;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:132,73:205:99:719,0,1046
14    107049049    rs2731153    A    G    1716.85    MQFilter40    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.431;DB;DP=187;Dels=0.0;FS=4.224;HRun=0;HaplotypeScore=0.9469;MQ=38.75;MQ0=30;MQRankSum=-1.018;QD=9.18;ReadPosRankSum=-0.342;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:94,93:187:99:1747,0,2253
14    107049080    rs2731152    A    G    2419.19    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=3.373;DB;DP=199;Dels=0.0;FS=2.586;HRun=0;HaplotypeScore=1.8455;MQ=44.37;MQ0=19;MQRankSum=0.052;QD=12.16;ReadPosRankSum=-0.438;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    0/1:105,94:199:99:2449,0,2595
14    107049249    rs2516921    G    C    1216.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=34.75;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_107049075_107049341;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390627    GT:AD:DP:GQ:PL    1/1:0,35:35:96.30:1249,96,0
14    107062209    rs1778    G    T    1754.14    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.125;DB;DP=109;Dels=0.0;FS=0.721;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.71;QD=16.09;ReadPosRankSum=0.862;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV7-56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518372    GT:AD:DP:GQ:PL    0/1:48,60:109:99:1784,0,1465
14    107066435    rs2583360    A    G    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV4-55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520889    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
14    107078567    rs2516904    T    C    1216.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.619;DB;DP=77;Dels=0.0;FS=3.176;HRun=0;HaplotypeScore=0.9578;MQ=57.56;MQ0=0;MQRankSum=0.005;QD=15.8;ReadPosRankSum=2.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390629    GT:AD:DP:GQ:PL    0/1:33,44:77:99:1246,0,891
14    107078790    rs1858692    C    T    2989.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV4-59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390629    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3022,223,0
14    107083126    rs11628176    T    A    327.45    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6616;MQ=45.73;MQ0=1;MQRankSum=-1.781;QD=10.23;ReadPosRankSum=-0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521678    GT:AD:DP:GQ:PL    0/1:19,13:32:99:357,0,621
14    107083138    rs11623505    C    A    318.83    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.277;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9326;MQ=44.91;MQ0=1;MQRankSum=-2.031;QD=7.09;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521678    GT:AD:DP:GQ:PL    0/1:26,18:45:99:349,0,886
14    107083151    rs11623507    C    G    432.95    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.496;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=43.53;MQ0=2;MQRankSum=-1.009;QD=6.66;ReadPosRankSum=-0.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521678    GT:AD:DP:GQ:PL    0/1:37,28:65:99:463,0,1103
14    107083633    rs2516932    T    C    1412.25    PASS    AB=0.312;AC=1;AF=0.50;AN=2;BaseQRankSum=1.358;DB;DP=93;Dels=0.0;FS=1.9;HRun=0;HaplotypeScore=1.8937;MQ=43.5;MQ0=5;MQRankSum=-3.089;QD=15.19;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521678    GT:AD:DP:GQ:PL    0/1:29,64:93:99:1442,0,803
14    107083740    rs12588296    A    C    443.88    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.224;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.82;MQ0=0;MQRankSum=-1.03;QD=20.18;ReadPosRankSum=-0.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521678    GT:AD:DP:GQ:PL    0/1:4,18:22:99:474,0,107
14    107095326    rs1064309    C    T    1915.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.572;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.86;MQ0=0;MQRankSum=4.301;QD=26.6;ReadPosRankSum=-3.327;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362610    GT:AD:DP:GQ:PL    1/1:8,64:72:3:1945,3,0
14    107095616    rs34526849    A    C    692.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.91;MQ0=1;QD=23.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362610    GT:AD:DP:GQ:PL    1/1:0,29:29:57.17:725,57,0
14    107095719    rs12893971    C    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.48;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362610    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
14    107099132    .    G    A    262.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.693;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.42;MQ0=2;MQRankSum=-0.117;QD=5.83;ReadPosRankSum=-1.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:30,15:45:99:293,0,621
14    107099142    .    CA    C    269.46    PASS    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=4.6;DP=37;FS=0.0;HRun=1;HaplotypeScore=320.323;IndelType=D;MQ=42.68;MQ0=2;MQRankSum=0.975;QD=5.18;ReadPosRankSum=0.325;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:35,17:37:99:308,0,1158
14    107099154    .    A    G    334.21    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.442;DP=59;Dels=0.0;FS=1.435;HRun=0;HaplotypeScore=1.8773;MQ=44.08;MQ0=4;MQRankSum=-1.308;QD=5.66;ReadPosRankSum=-1.602;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:36,23:59:99:364,0,807
14    107099160    .    C    T    366.97    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.106;DP=65;Dels=0.0;FS=4.921;HRun=0;HaplotypeScore=2.9731;MQ=44.91;MQ0=4;MQRankSum=-1.496;QD=5.65;ReadPosRankSum=-1.138;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:40,25:65:99:397,0,844
14    107099190    rs28445868    G    T    735.40    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.639;DB;DP=80;Dels=0.0;FS=29.905;HRun=0;HaplotypeScore=0.9578;MQ=42.36;MQ0=6;MQRankSum=-1.363;QD=9.19;ReadPosRankSum=-0.414;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:39,41:80:99:765,0,812
14    107099216    rs2904630    G    A    555.85    MQFilter40    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=99;Dels=0.0;FS=34.668;HRun=0;HaplotypeScore=0.0;MQ=39.86;MQ0=13;MQRankSum=0.996;QD=5.61;ReadPosRankSum=-0.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:69,30:99:99:586,0,1404
14    107099230    rs2904629    G    A    371.50    MQFilter40    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=2.085;DB;DP=95;Dels=0.0;FS=23.941;HRun=0;HaplotypeScore=0.0;MQ=39.01;MQ0=14;MQRankSum=0.738;QD=3.91;ReadPosRankSum=-0.426;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:71,24:95:99:401,0,1312
14    107099262    rs72483334    T    C    515.98    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=94;Dels=0.0;FS=5.663;HRun=1;HaplotypeScore=2.7719;MQ=40.11;MQ0=13;MQRankSum=-3.81;QD=5.49;ReadPosRankSum=0.491;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:50,44:94:99:546,0,1327
14    107099293    rs72688610    A    C    353.81    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=94;Dels=0.0;FS=10.234;HRun=1;HaplotypeScore=5.4109;MQ=43.81;MQ0=17;MQRankSum=-4.906;QD=3.76;ReadPosRankSum=-0.502;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:51,43:94:99:384,0,1512
14    107099305    rs117541988    T    C    251.41    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=91;Dels=0.0;FS=8.893;HRun=1;HaplotypeScore=9.9244;MQ=45.08;MQ0=15;MQRankSum=-5.941;QD=2.76;ReadPosRankSum=-0.041;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:55,36:91:99:281,0,1832
14    107099307    rs116885373    G    A    257.89    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.128;DB;DP=91;Dels=0.0;FS=11.16;HRun=0;HaplotypeScore=11.6333;MQ=44.87;MQ0=15;MQRankSum=-4.599;QD=2.83;ReadPosRankSum=-1.894;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:61,30:91:99:288,0,1727
14    107099328    rs113692972    A    T    413.12    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.731;DB;DP=98;Dels=0.0;FS=20.162;HRun=1;HaplotypeScore=2.5225;MQ=46.99;MQ0=8;MQRankSum=-5.186;QD=4.17;ReadPosRankSum=-2.844;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:70,28:98:99:443,0,2015
14    107099393    rs76492778    G    T    241.32    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.78;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5964;MQ=46.18;MQ0=2;MQRankSum=-6.05;QD=2.05;ReadPosRankSum=-0.329;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:93,25:118:99:271,0,2616
14    107099403    rs75068889    T    C    153.38    QDFilter2    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.505;DB;DP=117;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.5226;MQ=46.05;MQ0=2;MQRankSum=-6.099;QD=1.31;ReadPosRankSum=-1.873;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:90,27:117:99:183,0,2537
14    107099450    .    A    T    44.90    QDFilter2    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=2.553;DP=116;Dels=0.0;FS=24.367;HRun=0;HaplotypeScore=4.4676;MQ=49.02;MQ0=4;MQRankSum=-5.861;QD=0.39;ReadPosRankSum=-0.851;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:88,28:116:74.89:75,0,2896
14    107099451    rs117361638    A    G    45.63    QDFilter2    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=0.734;DB;DP=116;Dels=0.0;FS=24.949;HRun=0;HaplotypeScore=4.4676;MQ=49.22;MQ0=4;MQRankSum=-6.171;QD=0.39;ReadPosRankSum=-1.092;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:86,30:116:75.63:76,0,2884
14    107099480    rs113778466    C    T    512.99    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=117;Dels=0.0;FS=26.235;HRun=0;HaplotypeScore=0.9734;MQ=49.46;MQ0=4;MQRankSum=-6.773;QD=4.38;ReadPosRankSum=0.605;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:75,40:117:99:543,0,2582
14    107099502    rs112024498    T    C    733.60    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=0.489;DB;DP=117;Dels=0.0;FS=13.721;HRun=0;HaplotypeScore=1.866;MQ=49.88;MQ0=4;MQRankSum=-6.854;QD=6.27;ReadPosRankSum=2.837;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:75,42:117:99:764,0,2483
14    107099511    rs72622061    C    A    812.54    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.086;DB;DP=117;Dels=0.0;FS=11.309;HRun=0;HaplotypeScore=1.866;MQ=50.19;MQ0=3;MQRankSum=-7.24;QD=6.94;ReadPosRankSum=2.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:71,45:117:99:843,0,2425
14    107099559    rs111398850    A    G    806.25    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.739;DB;DP=147;Dels=0.0;FS=2.571;HRun=0;HaplotypeScore=1.7297;MQ=53.24;MQ0=0;MQRankSum=-7.822;QD=5.48;ReadPosRankSum=0.744;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:101,46:147:99:836,0,3183
14    107099619    rs73378200    G    C    403.86    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.251;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.7066;MQ=53.22;MQ0=0;MQRankSum=-6.522;QD=3.96;ReadPosRankSum=0.635;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:71,31:102:99:434,0,2146
14    107099633    rs115274959    G    A    141.46    QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.096;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7615;MQ=53.06;MQ0=0;MQRankSum=-6.458;QD=1.68;ReadPosRankSum=2.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:65,19:84:99:171,0,1993
14    107099642    rs28548301    C    T    146.88    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.578;DB;DP=67;Dels=0.0;FS=1.72;HRun=0;HaplotypeScore=2.9729;MQ=52.11;MQ0=0;MQRankSum=-5.972;QD=2.19;ReadPosRankSum=1.535;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:50,17:67:99:177,0,1672
14    107099677    rs113965766    G    GGA    389.71    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=4.502;DB;DP=41;FS=7.901;HRun=0;HaplotypeScore=202.155;IndelType=I;MQ=51.69;MQ0=0;MQRankSum=-4.534;QD=8.86;ReadPosRankSum=-0.745;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:32,12:41:99:429,0,1397
14    107099715    rs10467897    C    T    241.66    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=3.776;DB;DP=33;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=51.24;MQ0=0;MQRankSum=-4.403;QD=7.32;ReadPosRankSum=1.455;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520057    GT:AD:DP:GQ:PL    0/1:20,13:33:99:272,0,612
14    107113632    rs7149274    G    C    397.18    SnpCluster    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=2.061;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9916;MQ=54.52;MQ0=0;MQRankSum=-0.219;QD=18.05;ReadPosRankSum=-1.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:7,13:22:99:427,0,150
14    107113635    rs61997589    C    T    434.31    SnpCluster    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9916;MQ=53.52;MQ0=0;MQRankSum=-0.905;QD=14.48;ReadPosRankSum=-0.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:9,21:30:99:464,0,298
14    107113640    rs7150292    T    G    424.94    SnpCluster    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.331;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=54.56;MQ0=0;MQRankSum=-1.035;QD=13.71;ReadPosRankSum=-0.824;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:10,21:31:99:455,0,335
14    107113780    .    G    A    78.92    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.131;DP=180;Dels=0.0;FS=42.24;HRun=0;HaplotypeScore=1.8136;MQ=55.55;MQ0=2;MQRankSum=-6.893;QD=0.44;ReadPosRankSum=-0.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:152,28:180:99:109,0,5079
14    107113846    .    A    G    933.96    HaplotypeScoreFilter13;SnpCluster    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.728;DP=225;Dels=0.0;FS=2.063;HRun=1;HaplotypeScore=106.8731;MQ=54.23;MQ0=0;MQRankSum=-6.352;QD=4.15;ReadPosRankSum=0.059;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:171,54:225:99:964,0,5944
14    107113851    rs2072045    C    T    2229.16    HaplotypeScoreFilter13;SnpCluster    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=1.431;DB;DP=230;Dels=0.0;FS=5.712;HRun=1;HaplotypeScore=163.003;MQ=54.34;MQ0=0;MQRankSum=2.522;QD=9.69;ReadPosRankSum=-1.339;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:146,84:230:99:2259,0,4470
14    107113855    rs111637096    A    G    1006.54    HaplotypeScoreFilter13;SnpCluster    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.259;DB;DP=240;Dels=0.0;FS=2.014;HRun=0;HaplotypeScore=169.9883;MQ=54.31;MQ0=0;MQRankSum=-6.577;QD=4.19;ReadPosRankSum=0.651;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:182,58:240:99:1037,0,6135
14    107113858    rs111853090    A    G    1091.46    HaplotypeScoreFilter13;SnpCluster    AB=0.749;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.883;DB;DP=243;Dels=0.0;FS=0.578;HRun=0;HaplotypeScore=121.3219;MQ=54.32;MQ0=0;MQRankSum=-5.545;QD=4.49;ReadPosRankSum=0.683;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:182,61:243:99:1121,0,6205
14    107113968    rs113324720    C    A    752.47    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.974;DB;DP=229;DS;Dels=0.0;FS=2.302;HRun=1;HaplotypeScore=2.6602;MQ=45.76;MQ0=4;MQRankSum=-3.363;QD=3.29;ReadPosRankSum=3.687;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:173,55:229:99:782,0,4871
14    107114009    rs11846079    T    C    2765.04    PASS    AB=0.398;AC=1;AF=0.50;AN=2;BaseQRankSum=3.976;DB;DP=247;DS;Dels=0.0;FS=2.596;HRun=4;HaplotypeScore=9.7695;MQ=42.79;MQ0=6;MQRankSum=-6.674;QD=11.19;ReadPosRankSum=-2.456;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:98,148:247:99:2795,0,2690
14    107114193    rs2073670    A    G    1521.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=105;Dels=0.0;FS=0.818;HRun=0;HaplotypeScore=12.8723;MQ=57.99;MQ0=0;MQRankSum=-0.017;QD=14.49;ReadPosRankSum=2.273;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454421    GT:AD:DP:GQ:PL    0/1:52,52:105:99:1551,0,1567
14    107130943    rs1964193    G    A    899.86    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.675;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6492;MQ=43.91;MQ0=3;MQRankSum=-1.446;QD=13.43;ReadPosRankSum=0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:37,30:67:99:930,0,960
14    107130971    rs4436694    C    T    1690.03    PASS    AB=0.301;AC=1;AF=0.50;AN=2;BaseQRankSum=1.765;DB;DP=103;Dels=0.0;FS=7.127;HRun=2;HaplotypeScore=10.287;MQ=44.64;MQ0=6;MQRankSum=-6.552;QD=16.41;ReadPosRankSum=2.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:31,72:103:99:1720,0,794
14    107130977    rs1811153    A    G    1914.09    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=109;Dels=0.0;FS=9.363;HRun=0;HaplotypeScore=8.4971;MQ=43.5;MQ0=7;MQRankSum=-6.834;QD=17.56;ReadPosRankSum=3.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:33,76:109:99:1944,0,891
14    107131051    rs2583287    A    G    127.25    QDFilter2    AB=0.799;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.818;DB;DP=169;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7272;MQ=41.68;MQ0=23;MQRankSum=-2.625;QD=0.75;ReadPosRankSum=-3.029;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:135,34:169:99:157,0,3566
14    107131063    rs2583286    A    G    947.34    HaplotypeScoreFilter13    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.883;DB;DP=180;Dels=0.0;FS=57.192;HRun=1;HaplotypeScore=20.9754;MQ=40.69;MQ0=22;MQRankSum=-3.537;QD=5.26;ReadPosRankSum=1.643;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:114,66:180:99:977,0,2933
14    107131128    rs10143945    G    T    742.32    MQFilter40    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=3.926;DB;DP=177;Dels=0.0;FS=37.548;HRun=0;HaplotypeScore=3.4039;MQ=36.49;MQ0=14;MQRankSum=-4.484;QD=4.19;ReadPosRankSum=1.319;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:124,51:177:99:772,0,3025
14    107131164    rs6423677    A    C    478.01    FSFilter60;MQFilter40    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.307;DB;DP=159;Dels=0.0;FS=68.244;HRun=1;HaplotypeScore=0.0;MQ=37.82;MQ0=7;MQRankSum=-2.382;QD=3.01;ReadPosRankSum=-1.153;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:119,40:159:99:508,0,3281
14    107131246    rs141606676    C    T    168.25    MQFilter40;QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.852;DB;DP=190;Dels=0.0;FS=32.05;HRun=0;HaplotypeScore=4.3435;MQ=20.95;MQ0=91;MQRankSum=1.71;QD=0.89;ReadPosRankSum=0.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:162,27:190:99:198,0,1582
14    107131290    rs149638514    T    C    494.75    MQFilter40    AB=0.601;AC=1;AF=0.50;AN=2;BaseQRankSum=0.345;DB;DP=188;Dels=0.0;FS=19.876;HRun=1;HaplotypeScore=0.6651;MQ=16.42;MQ0=108;MQRankSum=3.407;QD=2.63;ReadPosRankSum=0.049;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:113,75:188:99:525,0,859
14    107131300    rs34376395    T    C    522.52    MQFilter40    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=3.697;DB;DP=189;Dels=0.0;FS=19.182;HRun=2;HaplotypeScore=1.6439;MQ=16.59;MQ0=111;MQRankSum=3.058;QD=2.76;ReadPosRankSum=-0.352;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:148,41:189:99:553,0,828
14    107131357    rs11623082    T    C    686.84    MQFilter40    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.311;DB;DP=144;Dels=0.0;FS=2.075;HRun=0;HaplotypeScore=0.9894;MQ=20.39;MQ0=77;MQRankSum=2.03;QD=4.77;ReadPosRankSum=1.471;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:104,40:144:99:717,0,937
14    107131394    rs11627259    G    A    1208.21    MQFilter40    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=6.012;DB;DP=158;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=31.42;MQ0=46;MQRankSum=-1.779;QD=7.65;ReadPosRankSum=-0.273;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:100,58:158:99:1238,0,1652
14    107131396    rs11627260    G    C    1212.38    MQFilter40    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DB;DP=162;Dels=0.0;FS=0.811;HRun=0;HaplotypeScore=0.9159;MQ=33.15;MQ0=42;MQRankSum=-1.2;QD=7.48;ReadPosRankSum=-0.872;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:100,62:162:99:1242,0,1824
14    107131410    rs11627183    A    G    1286.76    MQFilter40    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.975;DB;DP=174;Dels=0.0;FS=1.513;HRun=0;HaplotypeScore=0.0;MQ=37.85;MQ0=34;MQRankSum=-3.058;QD=7.4;ReadPosRankSum=-0.305;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-66;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390632    GT:AD:DP:GQ:PL    0/1:100,74:174:99:1317,0,2341
14    107169755    rs56130005    T    A    35.19    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.715;QD=3.2;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:8,3:11:65.19:65,0,276
14    107169769    rs34124558    A    AGAG    779.46    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=124.7641;IndelType=I;MQ=51.38;MQ0=0;MQRankSum=-2.137;QD=33.89;ReadPosRankSum=0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:13,10:23:99:818,0,384
14    107169846    rs74604042    C    A    2324.17    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=1.849;DB;DP=131;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6828;MQ=58.58;MQ0=0;MQRankSum=-0.458;QD=17.74;ReadPosRankSum=-0.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:45,86:131:99:2354,0,1449
14    107170005    rs1141720    T    C    1181.09    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.335;DB;DP=193;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.5839;MQ=59.04;MQ0=0;MQRankSum=0.846;QD=6.12;ReadPosRankSum=0.544;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:140,53:193:99:1211,0,4693
14    107170055    rs8009570    G    A    1934.40    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=203;DS;Dels=0.0;FS=1.85;HRun=0;HaplotypeScore=3.2215;MQ=58.51;MQ0=0;MQRankSum=-0.129;QD=9.53;ReadPosRankSum=-1.787;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:130,73:203:99:1964,0,4064
14    107170062    rs55891010    A    G    1619.71    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.06;DB;DP=195;DS;Dels=0.0;FS=1.197;HRun=1;HaplotypeScore=6.1877;MQ=58.33;MQ0=0;MQRankSum=-0.409;QD=8.31;ReadPosRankSum=-1.394;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:126,69:195:99:1650,0,4048
14    107170077    rs11845244    C    T    1400.86    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=3.49;DB;DP=195;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.1534;MQ=58.81;MQ0=0;MQRankSum=1.033;QD=7.18;ReadPosRankSum=1.821;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:135,60:195:99:1431,0,4026
14    107170219    rs2187989    C    G    1132.30    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=5.563;DB;DP=141;Dels=0.0;FS=3.706;HRun=1;HaplotypeScore=0.7887;MQ=58.85;MQ0=0;MQRankSum=0.718;QD=8.03;ReadPosRankSum=0.317;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:97,42:141:99:1162,0,3171
14    107170398    rs4448834    C    T    988.30    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=67;Dels=0.0;FS=4.6;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.345;QD=14.75;ReadPosRankSum=-0.32;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_107170322_107170428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1018,0,1034
14    107170410    rs10220412    G    C    331.60    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=1.696;DB;DP=59;Dels=0.0;FS=15.227;HRun=0;HaplotypeScore=0.734;MQ=59.29;MQ0=0;MQRankSum=0.548;QD=5.62;ReadPosRankSum=0.6;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_14_107170322_107170428;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:43,16:59:99:362,0,1477
14    107170472    rs9324094    G    A    196.55    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.905;QD=9.36;ReadPosRankSum=0.181;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:13,8:21:99:227,0,482
14    107170485    rs10220416    G    T    145.99    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=8.59;ReadPosRankSum=0.634;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:10,7:17:99:176,0,338
14    107170516    rs10220409    C    T    139.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7552;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=15.45;ReadPosRankSum=0.361;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:4,5:9:88.35:169,0,88
14    107170524    rs11623124    G    C    38.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=4.82;ReadPosRankSum=-1.221;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1-69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390633    GT:AD:DP:GQ:PL    0/1:5,3:8:68.55:69,0,173
14    107178560    rs35907179    G    A    80.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=20.19;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:111,0,28
14    107178613    rs74091554    T    C    66.31    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.55;QD=9.47;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    0/1:3,4:7:96.31:96,0,105
14    107178653    rs10144204    A    G    218.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:252,21,0
14    107178655    rs10144211    A    G    218.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:252,21,0
14    107178699    rs10144314    C    G    1007.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.27;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:0,28:28:84.25:1040,84,0
14    107178704    rs68104115    TG    T    1037.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=3;HaplotypeScore=455.1523;IndelType=D;MQ=45.57;MQ0=0;QD=35.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:0,29:29:87.27:1079,87,0
14    107178748    rs10144316    A    G    1349.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.96;MQ0=0;QD=30.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1382,129,0
14    107178770    rs59340064    A    G    1384.49    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=46.6532;MQ=31.25;MQ0=0;QD=26.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1417,141,0
14    107178773    rs57624663    A    G    1392.18    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=48.6263;MQ=31.04;MQ0=0;QD=25.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:0,53:55:99:1425,141,0
14    107178775    rs111549351    A    AG    3026.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.0;HRun=0;HaplotypeScore=1054.5565;IndelType=I;MQ=34.4;MQ0=0;QD=44.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:16,52:68:99:3068,196,0
14    107178795    rs10144331    A    G    2212.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.83;MQ0=0;QD=26.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2246,204,0
14    107178832    rs10144402    A    G    3907.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=47.27;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3907,322,0
14    107178941    rs10133751    T    A    849.04    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=2.392;DB;DP=122;Dels=0.0;FS=4.095;HRun=1;HaplotypeScore=3.0714;MQ=54.21;MQ0=0;MQRankSum=0.84;QD=6.96;ReadPosRankSum=-0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:84,38:122:99:879,0,2355
14    107178965    rs2073669    A    C    1502.14    PASS    AB=0.282;AC=1;AF=0.50;AN=2;BaseQRankSum=0.799;DB;DP=111;Dels=0.0;FS=13.986;HRun=0;HaplotypeScore=4.2482;MQ=54.94;MQ0=0;MQRankSum=-0.622;QD=13.53;ReadPosRankSum=-0.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:31,79:111:99:1532,0,747
14    107179017    rs61732209    A    G    600.43    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DB;DP=81;Dels=0.0;FS=0.894;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;MQRankSum=0.63;QD=7.41;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:53,28:81:99:630,0,1684
14    107179106    rs10144703    C    T    658.92    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=2.455;DB;DP=75;Dels=0.0;FS=6.614;HRun=1;HaplotypeScore=0.8941;MQ=59.19;MQ0=0;MQRankSum=0.54;QD=8.79;ReadPosRankSum=0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:49,26:75:99:689,0,1578
14    107179268    rs10144801    A    G    314.10    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=2.765;DB;DP=43;Dels=0.0;FS=1.406;HRun=2;HaplotypeScore=0.9967;MQ=59.48;MQ0=0;MQRankSum=0.65;QD=7.14;ReadPosRankSum=-0.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:28,15:43:99:344,0,912
14    107183367    rs3213599    C    T    2777.69    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=3.58;DB;DP=165;Dels=0.0;FS=3.878;HRun=0;HaplotypeScore=1.8136;MQ=47.59;MQ0=6;MQRankSum=-5.323;QD=16.83;ReadPosRankSum=2.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:56,109:165:99:2808,0,1537
14    107183382    rs3213598    T    C    86.65    QDFilter2    AB=0.888;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.552;DB;DP=170;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.7674;MQ=48.38;MQ0=6;MQRankSum=-3.65;QD=0.51;ReadPosRankSum=0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:151,19:170:99:117,0,4427
14    107183416    rs3213595    G    A    1625.24    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=5.109;DB;DP=145;Dels=0.0;FS=3.259;HRun=0;HaplotypeScore=3.6769;MQ=51.95;MQ0=5;MQRankSum=-3.262;QD=11.21;ReadPosRankSum=-1.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:72,73:145:99:1655,0,1939
14    107183620    rs3213594    T    A    1968.54    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.481;DB;DP=188;Dels=0.0;FS=6.562;HRun=2;HaplotypeScore=4.0706;MQ=53.09;MQ0=2;MQRankSum=-1.088;QD=10.47;ReadPosRankSum=0.946;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:112,76:188:99:1999,0,2913
14    107183677    rs28362068    G    A    1629.74    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.472;DB;DP=152;Dels=0.0;FS=6.752;HRun=0;HaplotypeScore=2.3196;MQ=51.34;MQ0=0;MQRankSum=-6.06;QD=10.65;ReadPosRankSum=-2.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:81,71:152:99:1660,0,2456
14    107183802    rs10137564    A    C    799.18    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.503;DB;DP=75;Dels=0.01;FS=0.966;HRun=1;HaplotypeScore=9.8213;MQ=46.48;MQ0=0;MQRankSum=-0.817;QD=10.52;ReadPosRankSum=-1.584;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHV3-71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523324    GT:AD:DP:GQ:PL    0/1:38,36:75:99:829,0,1171
14    107183934    rs10150044    T    A    755.15    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.655;DB;DP=50;Dels=0.0;FS=6.209;HRun=0;HaplotypeScore=0.0;MQ=54.3;MQ0=0;MQRankSum=1.202;QD=15.1;ReadPosRankSum=0.283;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    0/1:22,28:50:99:785,0,764
14    107183974    rs10137980    G    C    379.69    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.48;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.52;MQ0=0;MQRankSum=0.952;QD=13.09;ReadPosRankSum=0.766;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV2-70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390634    GT:AD:DP:GQ:PL    0/1:12,17:29:99:410,0,404
14    107198866    rs1987970    T    G    1586.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.51;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433072    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1620,129,0
14    107211211    rs2073668    G    A    2278.15    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.727;DB;DP=169;Dels=0.0;FS=2.809;HRun=0;HaplotypeScore=7.1321;MQ=58.68;MQ0=0;MQRankSum=0.599;QD=13.48;ReadPosRankSum=-1.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV3-73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390636    GT:AD:DP:GQ:PL    0/1:82,87:169:99:2308,0,2236
14    107282909    .    T    C    301.30    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.614;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6385;MQ=53.86;MQ0=0;MQRankSum=-7.522;QD=2.64;ReadPosRankSum=1.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522058    GT:AD:DP:GQ:PL    0/1:89,25:114:99:331,0,3009
14    107282926    rs149038822    A    T    222.79    QDFilter2    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=0.815;DB;DP=128;Dels=0.0;FS=1.096;HRun=1;HaplotypeScore=1.7621;MQ=55.04;MQ0=0;MQRankSum=-7.484;QD=1.74;ReadPosRankSum=4.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522058    GT:AD:DP:GQ:PL    0/1:105,23:128:99:253,0,3379
14    107282935    .    A    T    229.72    QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.293;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=55.27;MQ0=0;MQRankSum=-7.472;QD=1.77;ReadPosRankSum=3.816;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522058    GT:AD:DP:GQ:PL    0/1:106,23:130:99:260,0,3481
14    107282973    .    G    C    38.35    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.01;DP=125;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5634;MQ=56.2;MQ0=0;MQRankSum=-6.751;QD=0.31;ReadPosRankSum=-4.288;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGHVIII-82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522058    GT:AD:DP:GQ:PL    0/1:106,18:125:68.35:68,0,3451
15    20083754    rs7495373    G    A    378.61    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=87;Dels=0.0;FS=1.119;HRun=0;HaplotypeScore=0.7887;MQ=53.92;MQ0=1;MQRankSum=-6.516;QD=4.35;ReadPosRankSum=0.413;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:65,22:87:99:409,0,2140
15    20083800    rs79499772    C    T    564.70    PASS    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.122;DB;DP=135;Dels=0.0;FS=3.058;HRun=1;HaplotypeScore=1.7885;MQ=53.75;MQ0=1;MQRankSum=-8.513;QD=4.18;ReadPosRankSum=-0.173;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400231    GT:AD:DP:GQ:PL    0/1:101,34:135:99:595,0,3222
15    20083824    rs75698804    T    C    374.27    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=5.74;DB;DP=148;Dels=0.0;FS=1.913;HRun=1;HaplotypeScore=6.8923;MQ=53.62;MQ0=4;MQRankSum=-8.39;QD=2.53;ReadPosRankSum=-0.103;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:112,36:148:99:404,0,3505
15    20083839    rs10444913    A    G    438.76    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.003;DB;DP=148;Dels=0.0;FS=5.729;HRun=0;HaplotypeScore=7.2757;MQ=53.58;MQ0=4;MQRankSum=-8.499;QD=2.96;ReadPosRankSum=-0.825;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:112,36:148:99:469,0,3839
15    20083857    rs76341458    C    T    472.54    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=3.578;DB;DP=150;Dels=0.0;FS=7.045;HRun=1;HaplotypeScore=3.1977;MQ=54.25;MQ0=4;MQRankSum=-8.532;QD=3.15;ReadPosRankSum=-0.762;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:114,36:150:99:503,0,3884
15    20083896    rs10444914    G    T    1361.43    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.302;DB;DP=206;Dels=0.0;FS=0.58;HRun=1;HaplotypeScore=6.354;MQ=53.36;MQ0=4;MQRankSum=-8.61;QD=6.61;ReadPosRankSum=1.218;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:147,59:206:99:1391,0,4597
15    20083988    rs10444915    A    G    714.02    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=2.207;DB;DP=156;Dels=0.0;FS=10.143;HRun=0;HaplotypeScore=6.734;MQ=50.34;MQ0=8;MQRankSum=-7.603;QD=4.58;ReadPosRankSum=0.306;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:110,45:156:99:744,0,3625
15    20084006    rs10444916    A    G    473.44    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.434;DB;DP=139;Dels=0.0;FS=9.507;HRun=0;HaplotypeScore=5.781;MQ=49.85;MQ0=8;MQRankSum=-7.606;QD=3.41;ReadPosRankSum=-0.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:100,39:139:99:503,0,3479
15    20084088    rs7496176    C    T    1797.70    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.913;DB;DP=239;Dels=0.0;FS=32.745;HRun=0;HaplotypeScore=6.1828;MQ=50.19;MQ0=11;MQRankSum=-12.168;QD=7.52;ReadPosRankSum=-0.263;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:137,102:239:99:1828,0,4528
15    20084176    rs7496199    C    T    2895.61    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.221;DB;DP=249;DS;Dels=0.0;FS=1.012;HRun=1;HaplotypeScore=3.9017;MQ=54.57;MQ0=0;MQRankSum=-7.629;QD=11.63;ReadPosRankSum=0.739;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:128,120:249:99:2926,0,4117
15    20084188    rs112942337    T    TA    4240.94    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=13.015;DB;DP=235;DS;FS=1.647;HRun=0;HaplotypeScore=1357.2662;IndelType=I;MQ=55.52;MQ0=0;MQRankSum=-5.498;QD=17.67;ReadPosRankSum=1.249;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:129,111:235:99:4241,0,4478
15    20084263    rs7494972    T    C    370.46    QDFilter2    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.853;DB;DP=204;DS;Dels=0.0;FS=20.156;HRun=0;HaplotypeScore=1.5778;MQ=53.94;MQ0=10;MQRankSum=-5.168;QD=1.82;ReadPosRankSum=-0.102;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:162,42:204:99:400,0,5299
15    20084378    rs10444960    A    G    104.40    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.303;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=52.25;MQ0=0;MQRankSum=-3.775;QD=4.54;ReadPosRankSum=0.768;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:16,7:23:99:134,0,586
15    20084389    rs10444917    G    A    86.02    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=52.81;MQ0=0;MQRankSum=-3.215;QD=5.06;ReadPosRankSum=1.107;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:12,5:17:99:116,0,435
15    20086615    rs141247988    A    G    365.05    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.695;DB;DP=46;Dels=0.0;FS=1.92;HRun=0;HaplotypeScore=1.7323;MQ=50.38;MQ0=1;MQRankSum=1.476;QD=7.94;ReadPosRankSum=-1.452;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC138701.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400208    GT:AD:DP:GQ:PL    0/1:29,17:46:99:395,0,875
15    20279507    .    G    A    92.67    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DP=8;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=39.39;MQ0=1;MQRankSum=-0.198;QD=11.58;ReadPosRankSum=-1.495;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-173D3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553953    GT:AD:DP:GQ:PL    0/1:2,6:8:43.90:123,0,44
15    20362818    .    G    T    655    MQFilter40    AC=2;AF=1.00;AN=2;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.81;MQ0=25;QD=11.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554269    GT:AD:DP:GQ:PL    1/1:18,39:57:66.09:688,66,0
15    20433755    rs4114043    G    A    132.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.23;MQ0=0;QD=22.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    1/1:0,6:6:15.01:165,15,0
15    20444794    rs2722084    C    T    685.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.94;MQ0=5;QD=20.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    1/1:0,34:34:63.16:718,63,0
15    20444902    rs2722085    C    T    170.67    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=28.94;MQ0=0;MQRankSum=1.589;QD=21.33;ReadPosRankSum=-1.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    1/1:2,6:8:18.04:204,18,0
15    20447987    rs8024775    A    G    174.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.11;MQ0=2;QD=19.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    1/1:0,9:9:18.03:207,18,0
15    20448056    rs8024950    A    G    158.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.96;MQ0=5;QD=9.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    1/1:0,17:17:21.01:192,21,0
15    20448077    rs3963874    T    A    465.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.3;MQ0=4;QD=15.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    1/1:0,22:30:45.08:498,45,0
15    20450014    rs2466363    G    A    61.30    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.99;MQ0=0;MQRankSum=0.727;QD=15.33;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    0/1:1,3:4:24.95:91,0,25
15    20453825    rs7167849    A    G    228.12    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.89;MQ0=0;MQRankSum=-0.751;QD=25.35;ReadPosRankSum=0.751;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    0/1:1,8:9:13.56:258,0,14
15    20453896    rs2601517    G    C    624.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;QD=29.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:657,48,0
15    20456935    rs2954581    A    G    216.62    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.07;MQ0=0;MQRankSum=-0.66;QD=16.66;ReadPosRankSum=-1.369;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    0/1:6,7:13:99:247,0,211
15    20457291    rs6599891    T    C    906.76    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.22;MQ0=2;MQRankSum=-1.523;QD=25.19;ReadPosRankSum=-0.158;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    1/1:1,35:36:60.52:940,61,0
15    20457319    rs8038741    C    A    292.77    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.517;DB;DP=31;Dels=0.0;FS=3.372;HRun=1;HaplotypeScore=0.7887;MQ=42.17;MQ0=2;MQRankSum=-0.022;QD=9.44;ReadPosRankSum=1.865;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=AC126603.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557586    GT:AD:DP:GQ:PL    0/1:18,13:31:99:323,0,506
15    20488870    rs299671    G    A    371.76    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.135;DB;DP=46;Dels=0.0;FS=3.953;HRun=0;HaplotypeScore=0.8941;MQ=51.32;MQ0=0;MQRankSum=2.93;QD=8.08;ReadPosRankSum=-0.184;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-492D6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554701    GT:AD:DP:GQ:PL    0/1:32,14:46:99:402,0,973
15    20489155    rs167259    T    C    63.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.63;MQ0=1;QD=15.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-492D6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554701    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:95,9,0
15    20489310    rs4105745    A    G    398.16    MQFilter40    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.253;DB;DP=84;Dels=0.0;FS=17.621;HRun=0;HaplotypeScore=1.7333;MQ=30.77;MQ0=9;MQRankSum=0.617;QD=4.74;ReadPosRankSum=0.066;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-492D6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554701    GT:AD:DP:GQ:PL    0/1:64,20:84:99:428,0,1606
15    20489619    rs11632340    G    A    664.70    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.511;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8317;MQ=49.54;MQ0=4;MQRankSum=0.832;QD=10.9;ReadPosRankSum=0.331;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-492D6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554701    GT:AD:DP:GQ:PL    0/1:37,24:61:99:695,0,1117
15    20495201    rs139401442    GA    G    639.28    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=31;FS=3.979;HRun=1;HaplotypeScore=102.6695;IndelType=D;MQ=48.62;MQ0=0;MQRankSum=-1.318;QD=19.98;ReadPosRankSum=-1.399;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-492D6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554701    GT:AD:DP:GQ:PL    0/1:13,19:31:99:678,0,253
15    20495202    rs55739462    A    AG    234.80    PASS    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.983;DB;DP=32;FS=4.472;HRun=6;HaplotypeScore=153.8217;IndelType=I;MQ=48.31;MQ0=0;MQRankSum=2.381;QD=7.12;ReadPosRankSum=0.589;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-492D6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554701    GT:AD:DP:GQ:PL    0/1:25,8:32:99:274,0,107
15    20495408    rs2954587    G    A    319.49    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.287;DB;DP=73;Dels=0.0;FS=4.403;HRun=4;HaplotypeScore=0.0;MQ=52.34;MQ0=0;MQRankSum=1.94;QD=4.38;ReadPosRankSum=1.713;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-492D6.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554701    GT:AD:DP:GQ:PL    0/1:57,16:73:99:349,0,1807
15    20536565    .    G    A    78.62    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.08;MQ0=3;MQRankSum=1.495;QD=7.86;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:3,7:10:14.92:111,15,0
15    20588458    rs2291971    G    C    135.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HERC2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437318    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:168,12,0
15    20588563    rs2291972    A    G    381.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.21;MQ0=0;QD=29.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HERC2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426501    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:414,33,0
15    20644502    rs4931828    T    C    203.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=29.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HERC2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436934    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:236,18,0
15    20644521    rs56232550    G    A    204.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=29.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HERC2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436934    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
15    20644709    rs10902992    C    T    33.73    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=10;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=17.83;MQ0=5;MQRankSum=0.358;QD=3.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HERC2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440441    GT:AD:DP:GQ:PL    0/1:6,4:10:34.47:64,0,34
15    20645859    rs141439386    C    T    250.78    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.45;MQ0=0;QD=22.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HERC2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440441    GT:AD:DP:GQ:PL    1/1:0,11:11:24.04:284,24,0
15    20663293    .    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HERC2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412154    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
15    20663324    .    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.5;MQ0=5;QD=5.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HERC2P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412154    GT:AD:DP:GQ:PL    1/1:4,3:7:6.02:67,6,0
15    20744023    rs80042697    G    T    369.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.17;MQ0=4;QD=17.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427390    GT:AD:DP:GQ:PL    1/1:1,20:21:42.04:402,42,0
15    20771594    .    C    T    74.15    MQFilter40    AC=2;AF=1.00;AN=2;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=13.24;MQ0=14;QD=3.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=GOLGA8DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446144    GT:AD:DP:GQ:PL    1/1:9,10:19:9.03:106,9,0
15    20771825    rs12592066    G    T    773.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.62;MQ0=18;QD=15.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=GOLGA8DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446144    GT:AD:DP:GQ:PL    1/1:14,35:49:60.20:807,60,0
15    20772195    .    G    T    322.43    MQFilter40    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.751;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=23.9;MQ0=2;MQRankSum=0.576;QD=7.86;ReadPosRankSum=0.716;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=GOLGA8DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446144    GT:AD:DP:GQ:PL    0/1:20,21:41:99:352,0,320
15    20772207    .    G    A    166.36    MQFilter40    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.42;MQ0=3;MQRankSum=-0.669;QD=4.89;ReadPosRankSum=1.602;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=GOLGA8DP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446144    GT:AD:DP:GQ:PL    0/1:21,13:34:99:196,0,348
15    20867065    rs62000590    T    C    34.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.55;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=NBEAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556948    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:65,0,33
15    20867271    rs141345421    CTAA    C    1675.63    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=6.039;DB;DP=69;FS=0.0;HRun=0;HaplotypeScore=327.0581;IndelType=D;MQ=57.67;MQ0=0;MQRankSum=0.384;QD=24.28;ReadPosRankSum=-1.959;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=NBEAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556948    GT:AD:DP:GQ:PL    0/1:30,39:69:99:1715,0,1761
15    20867353    rs28707283    C    T    2210.22    PASS    AB=0.311;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.611;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9445;MQ=57.96;MQ0=0;MQRankSum=0.334;QD=20.85;ReadPosRankSum=0.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=NBEAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556948    GT:AD:DP:GQ:PL    0/1:33,73:106:99:2240,0,880
15    20867597    rs7170657    T    C    209.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.94;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=NBEAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556948    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
15    20876515    rs6422240    A    G    5514.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=33.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=NBEAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554452    GT:AD:DP:GQ:PL    1/1:0,163:163:99:5514,421,0
15    21071192    rs149235289    C    T    1704.09    MQFilter40    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.748;DB;DP=221;Dels=0.0;FS=5.058;HRun=0;HaplotypeScore=3.3435;MQ=17.2;MQ0=62;MQRankSum=2.286;QD=7.71;ReadPosRankSum=1.075;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-403B2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438063    GT:AD:DP:GQ:PL    0/1:80,141:221:99:1734,0,833
15    21140121    rs140760837    G    T    77.61    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.5;MQ0=3;MQRankSum=0.0;QD=5.54;ReadPosRankSum=-0.278;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-810K23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554622    GT:AD:DP:GQ:PL    0/1:7,7:14:45.76:108,0,46
15    21366545    .    C    T    65.35    MQFilter40;QDFilter2    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=2.014;DP=104;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=8.62;MQ0=86;MQRankSum=0.796;QD=0.63;ReadPosRankSum=1.545;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-854K16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556075    GT:AD:DP:GQ:PL    0/1:63,41:104:95.35:95,0,127
15    21366582    .    T    C    67.39    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DP=66;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=7.83;MQ0=58;MQRankSum=1.38;QD=1.02;ReadPosRankSum=-1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-854K16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556075    GT:AD:DP:GQ:PL    1/1:37,29:66:9.02:99,9,0
15    21369358    .    G    A    345.29    MQFilter40    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=4.243;DP=102;Dels=0.0;FS=5.561;HRun=0;HaplotypeScore=1.9468;MQ=19.34;MQ0=34;MQRankSum=-1.456;QD=3.39;ReadPosRankSum=0.221;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-854K16.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556075    GT:AD:DP:GQ:PL    0/1:70,32:102:99:375,0,615
15    21902821    rs143766262    T    TA    215.06    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.705;DB;DP=38;FS=0.0;HRun=9;HaplotypeScore=167.145;IndelType=I;MQ=54.65;MQ0=0;MQRankSum=0.515;QD=5.66;ReadPosRankSum=-1.612;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-32B5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555285    GT:AD:DP:GQ:PL    0/1:27,11:38:99:254,0,565
15    21902874    rs28642802    T    C    1373.28    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=53.73;MQ0=0;MQRankSum=-0.894;QD=18.56;ReadPosRankSum=-0.598;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-32B5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555285    GT:AD:DP:GQ:PL    0/1:28,46:74:99:1403,0,822
15    21902992    rs28375448    G    A    2447.25    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=2.117;DB;DP=137;Dels=0.0;FS=3.37;HRun=0;HaplotypeScore=0.9469;MQ=53.86;MQ0=0;MQRankSum=-0.67;QD=17.86;ReadPosRankSum=0.292;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-32B5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555285    GT:AD:DP:GQ:PL    0/1:51,86:137:99:2477,0,1397
15    21903068    rs113063164    T    TTAAA    3491.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=196.0333;IndelType=I;MQ=40.73;MQ0=1;QD=62.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-32B5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555285    GT:AD:DP:GQ:PL    1/1:6,49:52:99:3492,135,0
15    21903156    rs4983775    T    C    160.84    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.054;QD=10.05;ReadPosRankSum=0.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-32B5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555285    GT:AD:DP:GQ:PL    0/1:10,6:16:99:191,0,318
15    21937747    rs140872152    T    TAGAACTTTA    2477.40    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.482;DB;DP=39;FS=2.951;HRun=0;HaplotypeScore=269.8504;IndelType=I;MQ=40.42;MQ0=0;MQRankSum=-4.117;QD=40.61;ReadPosRankSum=1.291;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    0/1:25,34:39:99:2516,0,1485
15    21937819    rs4984133    G    C    1291.39    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=4.846;DB;DP=102;Dels=0.0;FS=2.104;HRun=3;HaplotypeScore=1.8332;MQ=56.5;MQ0=0;MQRankSum=2.188;QD=12.66;ReadPosRankSum=-0.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    0/1:57,45:102:99:1321,0,1421
15    21938049    rs2343906    C    T    5581    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DB;DP=175;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7803;MQ=58.28;MQ0=0;MQRankSum=1.613;QD=31.89;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    1/1:1,174:175:99:5581,433,0
15    21938114    rs2343905    T    C    3661.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.33;MQ0=0;QD=31.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3662,307,0
15    21938136    rs4247058    A    T    3214.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.89;MQ0=0;QD=32.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3247,265,0
15    21938163    rs4247057    T    G    1103.05    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=66;Dels=0.0;FS=4.123;HRun=1;HaplotypeScore=0.9999;MQ=56.21;MQ0=0;MQRankSum=-0.854;QD=16.71;ReadPosRankSum=0.827;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    0/1:26,40:66:99:1133,0,818
15    21938182    rs2343904    A    G    1359.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.38;MQ0=0;QD=35.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1393,105,0
15    21938208    rs151198681    GCGGAGGCGC    G    396.84    PASS    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=0.923;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=488.8601;IndelType=D;MQ=55.44;MQ0=0;MQRankSum=-2.195;QD=13.68;ReadPosRankSum=0.541;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    0/1:23,6:29:99:436,0,2342
15    21938287    rs4641705    T    C    55.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=-1.38;QD=9.21;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC068446.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500487    GT:AD:DP:GQ:PL    0/1:2,4:6:63.54:85,0,64
15    22074582    .    A    C    105.41    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.24;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.21;MQ0=7;MQRankSum=1.371;QD=4.79;ReadPosRankSum=-0.065;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POTEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435397    GT:AD:DP:GQ:PL    1/1:5,17:22:2.20:135,2,0
15    22074697    .    G    C    161.75    MQFilter40    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=15.5;MQ0=12;MQRankSum=1.371;QD=4.37;ReadPosRankSum=-0.596;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POTEB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435397    GT:AD:DP:GQ:PL    0/1:14,23:37:60.99:192,0,61
15    22140237    .    G    A    119.25    MQFilter40    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=16.92;MQ0=7;MQRankSum=1.776;QD=5.42;ReadPosRankSum=-1.653;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_processed_pseudogene;SNPEFF_GENE_NAME=RP11-928F19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556855    GT:AD:DP:GQ:PL    0/1:7,15:22:3.69:148,0,4
15    22297399    rs2435191    T    C    869.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=32.25;MQ0=0;QD=22.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-69H14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554547    GT:AD:DP:GQ:PL    1/1:0,39:39:81.04:903,81,0
15    22297466    rs3910010    G    C    3604.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=42.58;MQ0=0;QD=31.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-69H14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554547    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3604,289,0
15    22298164    rs1816291    G    T    3228.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.407;DB;DP=131;Dels=0.0;FS=3.278;HRun=7;HaplotypeScore=2.6077;MQ=40.63;MQ0=3;MQRankSum=0.526;QD=24.46;ReadPosRankSum=1.061;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-69H14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554547    GT:AD:DP:GQ:PL    1/1:3,128:131:99:3261,252,0
15    22298333    rs1816290    A    T    4225.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3302;MQ=56.4;MQ0=0;QD=36.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-69H14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554547    GT:AD:DP:GQ:PL    1/1:0,116:116:99:4226,319,0
15    22332331    rs1429492    A    G    385.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-69H14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557009    GT:AD:DP:GQ:PL    1/1:0,12:12:36.07:419,36,0
15    22332751    rs930109    T    C    953.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.18;MQ0=1;QD=28.05;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-69H14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557009    GT:AD:DP:GQ:PL    1/1:1,33:34:78.23:987,78,0
15    22333041    rs112228926    G    A    265.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.381;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.036;QD=12.06;ReadPosRankSum=1.315;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-69H14.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557009    GT:AD:DP:GQ:PL    0/1:12,9:22:99:295,0,397
15    22344739    rs58030160    T    C    2733.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.748;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.98;MQ0=0;MQRankSum=-0.791;QD=33.34;ReadPosRankSum=0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=snoU13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459608    GT:AD:DP:GQ:PL    1/1:1,80:82:99:2767,170,0
15    22344871    rs28571003    A    G    4640.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.45;MQ0=1;QD=31.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=snoU13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459608    GT:AD:DP:GQ:PL    1/1:0,146:146:99:4641,361,0
15    22344879    rs1366870    C    G    4460.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=47.66;MQ0=1;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=snoU13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459608    GT:AD:DP:GQ:PL    1/1:0,142:143:99:4461,355,0
15    22344951    rs1366871    T    C    1862.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.33;MQ0=9;QD=25.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=snoU13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459608    GT:AD:DP:GQ:PL    1/1:0,72:72:99:1895,162,0
15    22345038    rs1429471    T    C    953.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=22.64;MQ0=18;QD=18.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=snoU13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459608    GT:AD:DP:GQ:PL    1/1:0,51:51:93.18:986,93,0
15    22345178    rs61690271    C    A    2449.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.35;MQ0=9;QD=27.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=snoU13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459608    GT:AD:DP:GQ:PL    1/1:3,87:90:99:2482,199,0
15    22345490    rs77518658    A    G    2335.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.048;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.665;MQ=59.7;MQ0=0;MQRankSum=-1.504;QD=30.73;ReadPosRankSum=-1.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=snoU13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459608    GT:AD:DP:GQ:PL    1/1:1,75:76:99:2369,135,0
15    22368376    rs489674    G    A    252.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=36.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332663    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
15    22369248    rs491208    T    C    2363.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.7;MQ0=6;QD=26.56;SNPEFF_AMINO_ACID_CHANGE=F225L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_22368478_22369561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4M2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332663    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2397,198,0
15    22369426    rs4087943    G    A    1207.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=57.08;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=R284H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_22368478_22369561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4M2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332663    GT:AD:DP:GQ:PL    1/1:0,36:36:96.23:1241,96,0
15    22382739    rs2671839    A    G    180.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.93;MQ0=4;QD=7.85;SNPEFF_AMINO_ACID_CHANGE=K89;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_22382382_22383507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4N4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328795    GT:AD:DP:GQ:PL    1/1:0,22:23:24.01:213,24,0
15    22413597    rs79042047    A    AT    4783.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;FS=0.0;HRun=4;HaplotypeScore=246.1979;IndelType=I;MQ=45.38;MQ0=8;QD=35.44;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:7,128:122:99:4784,352,0
15    22413700    rs267612    A    G    2592.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=27.52;MQ0=16;QD=25.17;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,102:103:99:2625,232,0
15    22413940    rs7167256    T    C    1330.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.84;MQ0=0;QD=27.71;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1363,117,0
15    22414262    rs1429510    C    T    2336.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.876;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.37;MQ0=1;MQRankSum=0.287;QD=31.15;ReadPosRankSum=-0.051;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,73:75:99:2369,139,0
15    22466002    rs4779314    C    T    3869.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.67;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.79;MQ0=0;MQRankSum=-0.835;QD=34.55;ReadPosRankSum=-0.062;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,111:112:99:3869,258,0
15    22466126    rs1985064    A    C    7017.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=197;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9258;MQ=59.45;MQ0=1;QD=35.62;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,197:197:99:7018,518,0
15    22472942    rs586350    C    G    6494.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=238;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2312;MQ=43.64;MQ0=7;QD=27.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=VSIG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338567    GT:AD:DP:GQ:PL    1/1:0,238:238:99:6494,544,0
15    22473042    rs72687775    G    T    1037.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.49;DB;DP=183;DS;Dels=0.0;FS=10.234;HRun=0;HaplotypeScore=7.5849;MQ=51.68;MQ0=1;MQRankSum=-5.141;QD=5.67;ReadPosRankSum=1.063;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=VSIG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338567    GT:AD:DP:GQ:PL    0/1:122,61:183:99:1067,0,3845
15    22473106    rs72687776    G    A    749.13    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=118;Dels=0.0;FS=9.159;HRun=1;HaplotypeScore=1.6598;MQ=53.43;MQ0=1;MQRankSum=-1.643;QD=6.35;ReadPosRankSum=0.506;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=VSIG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338567    GT:AD:DP:GQ:PL    0/1:81,37:118:99:779,0,2565
15    22473146    rs75509601    A    G    318.08    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=2.078;DB;DP=101;Dels=0.0;FS=26.984;HRun=0;HaplotypeScore=3.1023;MQ=53.81;MQ0=2;MQRankSum=-2.298;QD=3.15;ReadPosRankSum=-1.074;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=VSIG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338567    GT:AD:DP:GQ:PL    0/1:75,26:101:99:348,0,2539
15    22473167    .    T    C    181.05    QDFilter2    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.25;DP=94;Dels=0.0;FS=34.878;HRun=2;HaplotypeScore=1.7323;MQ=51.2;MQ0=2;MQRankSum=-1.938;QD=1.91;ReadPosRankSum=-2.556;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=VSIG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338567    GT:AD:DP:GQ:PL    0/1:76,18:94:99:211,0,2504
15    22482721    rs1973424    T    C    1824.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5253;MQ=57.12;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,51:53:99:1858,138,0
15    22482858    rs1807224    A    G    7631.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.924;DB;DP=242;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5515;MQ=56.22;MQ0=0;MQRankSum=-1.342;QD=31.53;ReadPosRankSum=-1.169;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,240:242:99:7631,569,0
15    22483277    rs753259    A    G    1320.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1354,102,0
15    22483328    rs550604    T    C    819    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,24:24:69.20:852,69,0
15    22489958    rs111826301    C    T    60.35    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.546;QD=6.04;ReadPosRankSum=1.386;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,3:10:90.34:90,0,210
15    22489966    rs72687799    A    C    51.93    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.97;MQ0=1;MQRankSum=-1.214;QD=4.72;ReadPosRankSum=1.818;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,4:11:81.92:82,0,246
15    22489988    rs72687801    G    A    94.51    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=1;MQRankSum=-0.694;QD=6.75;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,5:14:99:125,0,247
15    22490035    rs72687802    A    G    51.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.45;MQ0=1;MQRankSum=-0.382;QD=4.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,4:12:81.83:82,0,229
15    22567264    rs1826883    A    G    1087.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=58.83;MQ0=0;MQRankSum=-1.392;QD=15.99;ReadPosRankSum=0.006;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-603B24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556034    GT:AD:DP:GQ:PL    0/1:34,34:68:99:1118,0,990
15    22709020    rs150718647    C    T    51.19    MQFilter40;QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.75;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6609;MQ=26.94;MQ0=3;MQRankSum=1.35;QD=1.09;ReadPosRankSum=0.25;SNPEFF_AMINO_ACID_CHANGE=R160Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_22708983_22709239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC116165.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314246    GT:AD:DP:GQ:PL    0/1:35,10:47:81.19:81,0,199
15    22709060    .    C    G    97.82    MQFilter40;QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.503;DP=98;Dels=0.0;FS=9.066;HRun=0;HaplotypeScore=1.6498;MQ=20.23;MQ0=31;MQRankSum=0.198;QD=1.0;ReadPosRankSum=-0.112;SNPEFF_AMINO_ACID_CHANGE=E147Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_22708983_22709239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC116165.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314246    GT:AD:DP:GQ:PL    0/1:83,15:98:99:128,0,827
15    22709569    .    A    C    108.13    MQFilter40;QDFilter2    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DP=96;Dels=0.0;FS=2.165;HRun=1;HaplotypeScore=0.6651;MQ=28.62;MQ0=20;MQRankSum=-3.272;QD=1.13;ReadPosRankSum=-2.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC116165.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314246    GT:AD:DP:GQ:PL    0/1:61,35:96:99:138,0,1745
15    22711629    .    G    A    695.62    MQFilter40    AC=2;AF=1.00;AN=2;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=24.57;MQ0=6;QD=18.8;SNPEFF_AMINO_ACID_CHANGE=A139;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_22711614_22711661;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC116165.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317692    GT:AD:DP:GQ:PL    1/1:4,33:37:66.01:729,66,0
15    22835646    rs8029154    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283645    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
15    22840279    rs61744212    G    T    1420.36    PASS    AB=0.402;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=87;Dels=0.0;FS=0.824;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.897;QD=16.33;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=L115;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_22840244_22840340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283645    GT:AD:DP:GQ:PL    0/1:35,52:87:99:1450,0,989
15    22845538    rs12910073    G    A    34.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.74;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283645    GT:AD:DP:GQ:PL    0/1:2,2:4:64.45:65,0,64
15    22845637    .    T    TTATTTTTAAA    912.11    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=3.388;DP=20;FS=0.0;HRun=0;HaplotypeScore=176.1076;IndelType=I;MQ=52.58;MQ0=0;MQRankSum=-2.082;QD=45.61;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283645    GT:AD:DP:GQ:PL    0/1:14,4:20:99:951,0,868
15    22845652    rs71400446    T    C    199.07    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.144;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=53.38;MQ0=0;MQRankSum=-1.68;QD=8.29;ReadPosRankSum=-1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283645    GT:AD:DP:GQ:PL    0/1:13,11:24:99:229,0,433
15    22853997    rs1544285    C    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283645    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
15    22864438    rs35914296    A    G    287.72    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=13.7;ReadPosRankSum=1.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283645    GT:AD:DP:GQ:PL    0/1:11,10:21:99:318,0,391
15    22867122    rs80302399    A    AAAG    251.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=41.9807;IndelType=I;MQ=58.98;MQ0=0;MQRankSum=-0.259;QD=20.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283645    GT:AD:DP:GQ:PL    0/1:6,6:12:99:290,0,224
15    22872992    rs11631470    G    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453949    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    22873325    rs1046860    A    G    359.22    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.117;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6785;MQ=59.36;MQ0=0;MQRankSum=0.143;QD=9.98;ReadPosRankSum=0.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453949    GT:AD:DP:GQ:PL    0/1:20,16:36:99:389,0,690
15    22926229    rs2289824    G    A    133.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
15    22947334    rs12910040    T    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
15    22955013    rs2289816    T    G    72.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=9.08;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    0/1:4,4:8:99:103,0,124
15    22958104    rs4134803    A    G    167.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:201,18,0
15    22958151    rs55859252    C    T    399.99    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=20;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=1.7653;MQ=58.84;MQ0=0;MQRankSum=0.041;QD=20.0;ReadPosRankSum=1.773;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    0/1:6,14:20:99:430,0,157
15    22960700    rs2289817    A    G    111.70    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=2.359;QD=10.15;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    0/1:5,6:11:99:142,0,177
15    22960868    rs2289818    G    C    1307.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=L256;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_22960793_22960889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435939    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1341,102,0
15    22960938    rs2289819    C    T    294.63    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=14.03;ReadPosRankSum=-0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    0/1:10,11:21:99:325,0,333
15    22962184    rs7359217    T    A    251.12    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=17.94;ReadPosRankSum=0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    0/1:6,8:14:99:281,0,202
15    22964125    rs4778471    A    G    68.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=22.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    1/1:0,3:3:9:101,9,0
15    22989918    rs12441373    A    G    169.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=14.09;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    0/1:6,6:12:99:199,0,168
15    22990345    rs12913456    T    G    70.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=17.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    1/1:0,4:4:9:103,9,0
15    22992946    .    T    G    266.71    MQFilter40    AB=0.048;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9993;MQ=36.97;MQ0=0;MQRankSum=-1.736;QD=12.7;ReadPosRankSum=1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYFIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313077    GT:AD:DP:GQ:PL    0/1:1,20:21:0.92:295,0,1
15    23000272    rs999842    A    G    396.88    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.82;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.218;QD=14.7;ReadPosRankSum=0.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337451    GT:AD:DP:GQ:PL    0/1:14,13:27:99:427,0,412
15    23021113    rs7170784    G    A    2467.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337451    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2501,196,0
15    23052632    rs11263683    T    C    3991.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.45;SNPEFF_AMINO_ACID_CHANGE=T147;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23052595_23052755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337435    GT:AD:DP:GQ:PL    1/1:0,123:123:99:3992,307,0
15    23098401    rs2347177    C    T    69.57    MQFilter40;QDFilter2    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=40;Dels=0.0;FS=8.232;HRun=2;HaplotypeScore=0.9973;MQ=34.02;MQ0=11;MQRankSum=-3.502;QD=1.74;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,12:40:99:100,0,598
15    23098449    rs2347179    C    T    534.79    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=90;Dels=0.0;FS=4.413;HRun=0;HaplotypeScore=0.9947;MQ=33.15;MQ0=8;MQRankSum=-3.696;QD=5.94;ReadPosRankSum=-0.281;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:45,45:90:99:565,0,1099
15    23098568    rs3057774    A    AGCAC    984.66    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=4.002;DB;DP=50;FS=5.102;HRun=0;HaplotypeScore=281.5823;IndelType=I;MQ=32.78;MQ0=13;MQRankSum=1.139;QD=11.19;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:47,41:50:99:1024,0,1919
15    23105196    rs28405611    A    G    218.21    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=16;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=13.64;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,9:16:99:248,0,216
15    23131745    rs7181884    G    A    84.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.83;MQ0=9;QD=4.69;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,18:18:12.01:117,12,0
15    23138992    .    G    A    92.09    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.66;MQ0=45;QD=1.77;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:23,29:52:12.02:125,12,0
15    23145716    rs28391453    T    C    103.78    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=-0.361;QD=11.53;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,176
15    23200055    rs7177771    T    C    34.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.48;MQ0=0;QD=17.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
15    23200056    rs7168067    G    A    34.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.48;MQ0=0;QD=17.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
15    23200095    rs142526030    G    A    44.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.64;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    0/1:1,2:3:18.64:74,0,19
15    23200294    rs148910586    T    C    385.74    MQFilter40    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=3.574;DB;DP=80;Dels=0.0;FS=14.14;HRun=0;HaplotypeScore=0.0;MQ=38.44;MQ0=4;MQRankSum=-0.043;QD=4.82;ReadPosRankSum=1.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    0/1:61,19:80:99:416,0,1578
15    23200323    rs59830212    T    G    1477.06    MQFilter40    AB=0.241;AC=1;AF=0.50;AN=2;BaseQRankSum=0.499;DB;DP=87;Dels=0.0;FS=3.878;HRun=0;HaplotypeScore=0.9665;MQ=33.1;MQ0=11;MQRankSum=-1.658;QD=16.98;ReadPosRankSum=1.745;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    0/1:21,66:87:99:1507,0,387
15    23200412    rs7177205    A    G    1022.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.72;MQ0=4;QD=23.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1056,102,0
15    23200489    .    C    T    31.51    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.18;MQ0=8;MQRankSum=-0.296;QD=1.75;ReadPosRankSum=1.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    0/1:15,3:18:61.50:61,0,173
15    23200698    rs58552405    A    T    1648.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=22.58;MQ0=31;QD=15.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    1/1:17,90:107:99:1682,156,0
15    23201364    .    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC138649.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340286    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
15    23258264    .    TTCTC    T    1188.65    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=4.744;DP=48;FS=0.0;HRun=0;HaplotypeScore=258.7507;IndelType=D;MQ=26.99;MQ0=19;MQRankSum=1.877;QD=16.28;ReadPosRankSum=2.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:46,27:48:99:1228,0,1564
15    23258393    .    C    G    188.60    MQFilter40;QDFilter2    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=2.129;DP=127;Dels=0.0;FS=1.757;HRun=0;HaplotypeScore=4.2231;MQ=16.72;MQ0=58;MQRankSum=-0.911;QD=1.49;ReadPosRankSum=0.163;SNPEFF_AMINO_ACID_CHANGE=I100M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23258322_23258402;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:88,39:127:99:219,0,431
15    23259270    .    A    G    34.70    MQFilter40;QDFilter2    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.614;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.45;MQ0=78;MQRankSum=-0.137;QD=0.3;ReadPosRankSum=-0.309;SNPEFF_AMINO_ACID_CHANGE=K108;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23259256_23259294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:82,33:115:64.70:65,0,239
15    23261129    .    A    G    1300.75    MQFilter40    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DP=131;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5731;MQ=37.5;MQ0=13;MQRankSum=0.044;QD=9.93;ReadPosRankSum=1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:64,67:131:99:1331,0,1330
15    23261646    rs3896789    T    C    245.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.768;DB;DP=28;Dels=0.0;FS=3.183;HRun=0;HaplotypeScore=0.9997;MQ=41.6;MQ0=2;MQRankSum=-1.659;QD=8.77;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:12,16:28:99:276,0,372
15    23261950    rs11857654    A    G    534.93    MQFilter40    AB=0.376;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.944;DB;DP=125;Dels=0.0;FS=0.944;HRun=1;HaplotypeScore=0.0;MQ=30.96;MQ0=1;MQRankSum=-5.307;QD=4.28;ReadPosRankSum=-2.064;SNPEFF_AMINO_ACID_CHANGE=E354;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23261763_23262019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:47,78:125:99:565,0,1207
15    23262031    rs11856345    C    A    46.54    MQFilter40;QDFilter2    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.282;DB;DP=46;Dels=0.0;FS=5.999;HRun=1;HaplotypeScore=0.0;MQ=31.92;MQ0=1;MQRankSum=-4.676;QD=1.01;ReadPosRankSum=-0.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:24,22:46:76.54:77,0,448
15    23262033    rs11853703    G    A    48.99    MQFilter40;QDFilter2    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.219;DB;DP=45;Dels=0.0;FS=5.999;HRun=1;HaplotypeScore=2.7476;MQ=32.22;MQ0=1;MQRankSum=-4.847;QD=1.09;ReadPosRankSum=-1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:23,22:45:78.98:79,0,464
15    23263419    rs79435024    G    A    170.31    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.3;MQ0=1;MQRankSum=-0.731;QD=15.48;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339078    GT:AD:DP:GQ:PL    0/1:4,7:11:67.19:200,0,67
15    23263535    rs71401066    C    T    81.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=18;Dels=0.0;FS=25.233;HRun=0;HaplotypeScore=0.0;MQ=45.65;MQ0=2;MQRankSum=-1.653;QD=4.53;ReadPosRankSum=-1.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339078    GT:AD:DP:GQ:PL    0/1:10,8:18:99:112,0,276
15    23264927    rs79976599    A    C    239.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.39;MQ0=33;QD=4.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339078    GT:AD:DP:GQ:PL    1/1:1,52:53:27.02:272,27,0
15    23264983    rs74732485    G    A    207.43    MQFilter40    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=1.081;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.3556;MQ=15.02;MQ0=32;MQRankSum=2.036;QD=2.69;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=R502H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23264948_23265045;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    0/1:46,31:77:68.66:237,0,69
15    23264985    rs62000634    G    T    330.75    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.143;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.3556;MQ=15.02;MQ0=32;MQRankSum=1.55;QD=4.3;ReadPosRankSum=-1.112;SNPEFF_AMINO_ACID_CHANGE=A503S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23264948_23265045;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    1/1:15,62:77:33.04:364,33,0
15    23265051    rs62000635    G    T    53.75    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=8.69;MQ0=25;MQRankSum=0.978;QD=1.49;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339078    GT:AD:DP:GQ:PL    1/1:12,24:36:9.01:86,9,0
15    23265262    .    C    T    68.27    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.17;MQ0=73;QD=0.88;SNPEFF_AMINO_ACID_CHANGE=A563;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23265141_23265296;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GOLGA8IP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450802    GT:AD:DP:GQ:PL    1/1:69,9:78:9.02:100,9,0
15    23288063    rs8037979    T    C    364.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.9;MQ0=0;QD=24.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091565.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454333    GT:AD:DP:GQ:PL    1/1:0,15:15:39.05:398,39,0
15    23436828    .    T    G    188.30    MQFilter40    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.99;MQ0=2;MQRankSum=-1.833;QD=7.53;ReadPosRankSum=-1.903;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOLGA8E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328919    GT:AD:DP:GQ:PL    0/1:9,16:25:99:218,0,134
15    23443591    rs183821600    T    C    195.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.66;MQ0=9;QD=6.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOLGA8E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328919    GT:AD:DP:GQ:PL    1/1:0,29:29:23.99:228,24,0
15    23445323    .    G    T    44.72    MQFilter40;QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.794;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=10.37;MQ0=87;MQRankSum=0.552;QD=0.3;ReadPosRankSum=-2.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC100757.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458911    GT:AD:DP:GQ:PL    0/1:118,29:147:74.71:75,0,128
15    23604557    rs142962485    A    C    84.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.67;MQ0=0;QD=28.11;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC100756.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491146    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
15    23606317    .    T    TTTTCTTTTC    510.61    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=0;HaplotypeScore=95.3659;IndelType=I;MQ=36.79;MQ0=1;QD=25.53;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC100756.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459602    GT:AD:DP:GQ:PL    1/1:5,12:14:38.84:553,39,0
15    23609538    rs149847867    G    C    1254.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.247;DB;DP=171;Dels=0.0;FS=10.605;HRun=0;HaplotypeScore=3.5523;MQ=47.09;MQ0=8;MQRankSum=-0.57;QD=7.34;ReadPosRankSum=-1.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC100756.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491146    GT:AD:DP:GQ:PL    0/1:114,57:171:99:1285,0,3116
15    23609708    rs141294239    G    A    430.67    MQFilter40    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=1.216;DB;DP=90;Dels=0.0;FS=3.902;HRun=0;HaplotypeScore=1.5717;MQ=29.72;MQ0=14;MQRankSum=-1.65;QD=4.79;ReadPosRankSum=-1.661;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC100756.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459602    GT:AD:DP:GQ:PL    0/1:61,29:90:99:461,0,948
15    23609710    rs150829726    G    T    434.36    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.145;DB;DP=90;Dels=0.0;FS=3.746;HRun=1;HaplotypeScore=1.5717;MQ=29.31;MQ0=14;MQRankSum=-1.534;QD=4.83;ReadPosRankSum=-1.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC100756.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459602    GT:AD:DP:GQ:PL    0/1:60,30:90:99:464,0,913
15    23609721    rs3826014    G    A    309.49    MQFilter40    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.53;MQ0=17;MQRankSum=-0.2;QD=3.77;ReadPosRankSum=0.443;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC100756.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459602    GT:AD:DP:GQ:PL    0/1:59,23:82:99:339,0,752
15    23609776    rs4036663    G    T    183.17    MQFilter40    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=2.318;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.87;MQ0=14;MQRankSum=2.025;QD=4.26;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC100756.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459602    GT:AD:DP:GQ:PL    0/1:28,15:43:88.03:213,0,88
15    23610192    rs145107361    G    A    1678.16    MQFilter40    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=6.202;DB;DP=189;Dels=0.0;FS=1.96;HRun=0;HaplotypeScore=7.4914;MQ=29.28;MQ0=11;MQRankSum=0.32;QD=8.83;ReadPosRankSum=1.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC100756.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459602    GT:AD:DP:GQ:PL    0/1:96,92:189:99:1708,0,1362
15    23610305    rs139243742    C    T    1505.77    MQFilter40    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=2.174;DB;DP=152;Dels=0.0;FS=2.846;HRun=1;HaplotypeScore=0.5784;MQ=36.83;MQ0=2;MQRankSum=-1.888;QD=9.91;ReadPosRankSum=1.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC100756.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459602    GT:AD:DP:GQ:PL    0/1:82,70:152:99:1536,0,1895
15    23684528    rs2020361    C    T    239.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:273,21,0
15    23686598    rs35708006    T    C    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_AMINO_ACID_CHANGE=K342E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23685990_23686829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
15    23686673    rs59122400    G    A    171.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=R317W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23685990_23686829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
15    23686914    rs57504140    T    A    578.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=24.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,24:24:57.14:611,57,0
15    23686924    rs58446506    T    C    728.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:761,60,0
15    23687081    rs57599072    T    C    843.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:876,66,0
15    23687214    rs12594944    C    G    2053.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.88;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=R235P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23687126_23687267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2086,162,0
15    23687440    rs12594986    C    A    671.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.72;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:705,57,0
15    23687812    rs2344891    T    G    382.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7321;MQ=57.15;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:416,33,0
15    23687818    rs112337611    CT    C    154.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=11;HaplotypeScore=71.0725;IndelType=D;MQ=58.79;MQ0=0;QD=14.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:3,8:11:23.97:197,24,0
15    23687915    rs2344892    T    C    96.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=24.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:129,12,0
15    23688944    rs4778531    A    G    482.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=W191R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23688924_23689220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:515,42,0
15    23689510    rs12902150    C    G    640.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:673,54,0
15    23690510    rs3866720    T    G    65.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.38;MQ0=2;QD=9.34;SNPEFF_AMINO_ACID_CHANGE=N54H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23690457_23690585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,7:7:9.01:97,9,0
15    23690543    rs2344900    T    C    133.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.97;MQ0=2;QD=11.13;SNPEFF_AMINO_ACID_CHANGE=R43G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_23690457_23690585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,12:12:15.02:166,15,0
15    23690696    rs3896866    C    T    33.45    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.28;MQ0=1;QD=11.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312015    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:65,6,0
15    24921771    rs1563102    G    C    363.30    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=39;Dels=0.0;FS=5.019;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.043;QD=9.32;ReadPosRankSum=1.198;SNPEFF_AMINO_ACID_CHANGE=G253R;SNPEFF_CODON_CHANGE=Gga/Cga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_24920541_24928593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329468    GT:AD:DP:GQ:PL    0/1:24,15:39:99:393,0,783
15    25154434    rs8023367    T    C    899.33    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.946;DB;DP=72;Dels=0.01;FS=2.213;HRun=0;HaplotypeScore=10.1886;MQ=58.68;MQ0=1;MQRankSum=-0.727;QD=12.15;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400097    GT:AD:DP:GQ:PL    0/1:38,34:72:99:929,0,1104
15    25219512    rs705    T    C    3940.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=59.82;MQ0=0;QD=31.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNURF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346403    GT:AD:DP:GQ:PL    1/1:0,125:126:99:3940,295,0
15    25299309    rs2554432    C    T    1102.91    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=59;Dels=0.0;FS=1.944;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.07;QD=18.69;ReadPosRankSum=0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384335    GT:AD:DP:GQ:PL    0/1:23,36:59:99:1133,0,784
15    25299615    rs56039610    G    A    180.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.741;QD=18.08;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384335    GT:AD:DP:GQ:PL    0/1:4,6:10:99:211,0,129
15    25301956    .    G    T    56.79    QDFilter2    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DP=60;Dels=0.0;FS=2.933;HRun=2;HaplotypeScore=5.8397;MQ=48.77;MQ0=0;MQRankSum=-2.582;QD=0.95;ReadPosRankSum=3.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384274    GT:AD:DP:GQ:PL    0/1:26,33:60:86.78:87,0,418
15    25307428    .    G    T    188.10    MQFilter40    AB=0.161;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.755;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.2298;MQ=34.79;MQ0=0;MQRankSum=-1.868;QD=6.07;ReadPosRankSum=2.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384733    GT:AD:DP:GQ:PL    0/1:5,26:31:81.09:218,0,81
15    25307432    .    A    C    39.59    MQFilter40;QDFilter2    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.561;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.2298;MQ=38.51;MQ0=0;MQRankSum=-2.826;QD=1.13;ReadPosRankSum=2.384;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384733    GT:AD:DP:GQ:PL    0/1:13,22:35:69.59:70,0,271
15    25307562    rs7402542    A    G    2011    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.65;MQ0=1;QD=30.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384733    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2044,165,0
15    25310440    rs6576402    A    G    73.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384462    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
15    25312695    rs11637737    G    A    34.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384711    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
15    25312845    rs34400725    TCC    T    1239.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=6;HaplotypeScore=119.0088;IndelType=D;MQ=57.42;MQ0=0;QD=37.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384711    GT:AD:DP:GQ:PL    1/1:1,32:33:96.32:1281,96,0
15    25321029    rs4906699    C    T    1110.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.748;MQ=59.32;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363791    GT:AD:DP:GQ:PL    1/1:0,34:34:93.28:1144,93,0
15    25324141    rs4344720    C    T    1631.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=38.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363791    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1665,123,0
15    25328715    rs3803326    T    C    4047.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9365;MQ=59.64;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384408    GT:AD:DP:GQ:PL    1/1:1,133:134:99:4048,325,0
15    25330550    rs3803328    T    A    3384.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=53.09;MQ0=0;QD=30.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384445    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3384,256,0
15    25332718    rs6576404    T    C    946.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.61;MQ0=0;QD=35.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384533    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:979,78,0
15    25334086    rs3863396    T    C    2539.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.65;MQ0=0;QD=33.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD116-18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383961    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2572,223,0
15    25415693    rs2739837    T    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=ncrna_host;SNPEFF_GENE_NAME=UBE3A-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549301    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
15    25415759    rs2714734    G    A    1461.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.39;MQ0=0;QD=38.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=ncrna_host;SNPEFF_GENE_NAME=UBE3A-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549301    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1495,114,0
15    25415809    rs2739838    C    T    2179.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=36.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=ncrna_host;SNPEFF_GENE_NAME=UBE3A-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549301    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2212,172,0
15    25415825    rs1883009    C    T    2470.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2312;MQ=59.37;MQ0=0;QD=33.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=ncrna_host;SNPEFF_GENE_NAME=UBE3A-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549301    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2503,187,0
15    25417676    rs2739839    C    T    290.45    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.436;DB;DP=25;Dels=0.0;FS=2.481;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.724;QD=11.62;ReadPosRankSum=1.341;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD115-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000364961    GT:AD:DP:GQ:PL    0/1:14,11:25:99:320,0,468
15    25453014    rs6576414    T    C    120.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD115-18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363293    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
15    25496028    rs72546368    A    G    2747.13    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=3.085;DB;DP=162;Dels=0.0;FS=0.604;HRun=0;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;MQRankSum=-1.776;QD=16.96;ReadPosRankSum=0.345;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD115-42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000364273    GT:AD:DP:GQ:PL    0/1:73,89:162:99:2777,0,2094
15    25496337    rs187228854    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD115-42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000364273    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    25652101    rs8032479    C    G    670.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000232165    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:703,54,0
15    25925094    rs3816800    C    G    1572.18    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.466;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1544;MQ=59.78;MQ0=0;MQRankSum=-1.231;QD=15.26;ReadPosRankSum=1.446;SNPEFF_AMINO_ACID_CHANGE=R1298S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_25922420_25925121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    0/1:42,61:103:99:1602,0,1278
15    25925195    rs3736186    T    C    1344.03    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=74;Dels=0.0;FS=0.91;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=18.16;ReadPosRankSum=0.679;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555450    GT:AD:DP:GQ:PL    0/1:31,43:74:99:1374,0,1007
15    25925933    rs901003    C    A    922.71    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.509;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=59.42;MQ0=0;MQRankSum=1.921;QD=12.82;ReadPosRankSum=-0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555450    GT:AD:DP:GQ:PL    0/1:39,33:72:99:953,0,1255
15    25926186    rs2076743    G    A    1042.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.631;DB;DP=68;Dels=0.0;FS=2.052;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.558;QD=15.33;ReadPosRankSum=0.73;SNPEFF_AMINO_ACID_CHANGE=A1176;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_25926141_25926221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    0/1:34,34:68:99:1073,0,924
15    25926325    rs35849027    T    TAAC    449.87    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=42.4199;IndelType=I;MQ=56.13;MQ0=0;MQRankSum=-0.354;QD=32.13;ReadPosRankSum=0.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555756    GT:AD:DP:GQ:PL    0/1:6,8:14:59.77:489,0,60
15    25932726    .    A    T    43.55    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-3.071;QD=2.18;ReadPosRankSum=-2.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    0/1:16,4:20:73.54:74,0,599
15    25937004    rs2066705    C    T    2335.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2368,175,0
15    25937033    rs4906745    T    G    616.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=42;Dels=0.0;FS=3.118;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.613;QD=14.68;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    0/1:21,21:42:99:647,0,728
15    25937150    rs4906746    G    T    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
15    25946965    rs4906620    A    C    201.49    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.259;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.556;QD=8.06;ReadPosRankSum=-2.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    0/1:14,11:25:99:231,0,477
15    25953068    rs2291355    G    A    218.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=14.59;ReadPosRankSum=-0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    0/1:5,10:15:99:249,0,167
15    25961964    rs10873607    A    G    2545.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5226;MQ=59.72;MQ0=0;QD=31.04;SNPEFF_AMINO_ACID_CHANGE=P563;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_25961877_25962071;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:1,81:82:99:2579,208,0
15    25966618    rs8043329    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
15    25966664    rs8043353    C    T    366.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:399,33,0
15    25966690    rs59037981    CGT    C    224.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=133.6083;IndelType=D;MQ=55.31;MQ0=0;QD=12.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:7,6:18:33.80:267,34,0
15    25967085    rs1564828    T    C    1785.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1819,150,0
15    25972202    rs33946132    C    CAAAA    728.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=169.5496;IndelType=I;MQ=31.98;MQ0=0;QD=52.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:8,5:14:39.13:770,39,0
15    25981190    rs7173593    A    G    807.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:0,25:25:69.19:840,69,0
15    25981367    rs7177724    C    T    329.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:362,27,0
15    25981436    rs7178556    A    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    26026139    rs8038726    A    G    953.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=29.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356865    GT:AD:DP:GQ:PL    1/1:0,32:32:84.23:986,84,0
15    26260450    rs12440137    C    T    244.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DB;DP=22;Dels=0.0;FS=6.69;HRun=0;HaplotypeScore=5.7982;MQ=58.38;MQ0=0;MQRankSum=0.131;QD=11.11;ReadPosRankSum=0.328;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-1084I9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383019    GT:AD:DP:GQ:PL    0/1:11,11:22:99:274,0,390
15    26260477    rs12437822    T    C    228.38    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.101;DB;DP=24;Dels=0.0;FS=2.007;HRun=1;HaplotypeScore=3.898;MQ=58.05;MQ0=0;MQRankSum=1.043;QD=9.52;ReadPosRankSum=0.348;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-1084I9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383019    GT:AD:DP:GQ:PL    0/1:13,11:24:99:258,0,399
15    26806064    rs3751582    T    C    1500.91    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=105;Dels=0.0;FS=2.517;HRun=0;HaplotypeScore=1.9315;MQ=59.78;MQ0=0;MQRankSum=1.567;QD=14.29;ReadPosRankSum=1.291;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554556    GT:AD:DP:GQ:PL    0/1:53,52:105:99:1531,0,1519
15    26866738    rs45542840    C    T    133.12    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.66;MQ0=0;MQRankSum=0.437;QD=9.51;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299267    GT:AD:DP:GQ:PL    0/1:9,5:14:99:163,0,252
15    27126284    rs9286393    G    T    242.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557484    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
15    27182212    rs140681    G    A    693.80    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.58;QD=20.41;ReadPosRankSum=-0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335625    GT:AD:DP:GQ:PL    0/1:13,21:34:99:724,0,384
15    27182357    rs140682    T    C    2218.51    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.848;DB;DP=163;Dels=0.0;FS=0.59;HRun=0;HaplotypeScore=2.531;MQ=59.72;MQ0=0;MQRankSum=-0.144;QD=13.61;ReadPosRankSum=-1.337;SNPEFF_AMINO_ACID_CHANGE=V202;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_27182332_27182475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335625    GT:AD:DP:GQ:PL    0/1:83,80:163:99:2248,0,2518
15    27182656    rs61999613    A    G    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555182    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
15    27184435    rs12910925    C    T    2377.81    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=3.454;DB;DP=158;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.7323;MQ=59.56;MQ0=0;MQRankSum=0.835;QD=15.05;ReadPosRankSum=-0.587;SNPEFF_AMINO_ACID_CHANGE=R50Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_27184384_27184686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541819    GT:AD:DP:GQ:PL    0/1:78,79:158:99:2408,0,2106
15    27184482    rs34560927    C    T    1584.71    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=4.612;DB;DP=111;Dels=0.0;FS=0.777;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.012;QD=14.28;ReadPosRankSum=0.03;SNPEFF_AMINO_ACID_CHANGE=A34;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_27184384_27184686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541819    GT:AD:DP:GQ:PL    0/1:58,53:111:99:1615,0,1572
15    27184517    rs17647384    G    A    1315.49    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.018;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.579;QD=15.66;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=R23C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_27184384_27184686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541819    GT:AD:DP:GQ:PL    0/1:39,45:84:99:1345,0,1219
15    27188459    rs140685    C    T    250.24    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.951;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=11.92;ReadPosRankSum=0.81;SNPEFF_AMINO_ACID_CHANGE=A325;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_27188362_27188573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335625    GT:AD:DP:GQ:PL    0/1:11,10:21:99:280,0,314
15    27222015    rs140670    T    A    315.01    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.152;QD=15.75;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:9,11:20:99:345,0,283
15    27222098    rs140671    C    G    784.66    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.811;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9963;MQ=59.4;MQ0=0;MQRankSum=0.113;QD=12.66;ReadPosRankSum=-1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:29,33:62:99:815,0,868
15    27271789    rs35270520    G    T    567.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.471;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.111;QD=15.76;ReadPosRankSum=-0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:18,18:36:99:597,0,573
15    27272120    rs28399527    TAA    T    226.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DB;DP=20;FS=0.0;HRun=11;HaplotypeScore=63.0865;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=0.666;QD=11.31;ReadPosRankSum=0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:10,10:20:99:265,0,315
15    27725673    rs140676    T    A    139.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=9.95;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:7,7:14:99:169,0,233
15    27764940    rs12904612    T    A    81.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.4;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:112,0,26
15    27764968    rs140677    C    A    113.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=18.87;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:2,4:6:66.40:143,0,66
15    27772505    rs140678    G    T    229.78    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.324;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=15.32;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:7,8:15:99:260,0,237
15    27772676    rs140679    C    T    1005.94    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.833;DB;DP=72;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.088;QD=13.97;ReadPosRankSum=0.739;SNPEFF_AMINO_ACID_CHANGE=T321;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_27772579_27772775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333743    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1036,0,1141
15    27772892    rs2303879    G    A    217.48    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=12.08;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554696    GT:AD:DP:GQ:PL    0/1:10,8:18:99:247,0,354
15    27890491    rs1871017    G    T    1414.76    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.558;DB;DP=103;Dels=0.0;FS=9.566;HRun=1;HaplotypeScore=1.996;MQ=60.21;MQ0=0;MQRankSum=0.151;QD=13.74;ReadPosRankSum=-1.248;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:53,50:103:99:1445,0,1645
15    27890571    rs5811500    GT    G    452.92    PASS    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=5.8;DB;DP=52;FS=4.606;HRun=9;HaplotypeScore=230.4792;IndelType=D;MQ=60.62;MQ0=0;MQRankSum=-1.626;QD=8.71;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:29,23:52:99:492,0,655
15    27890589    rs1871018    A    G    651.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.946;DB;DP=44;Dels=0.0;FS=2.169;HRun=0;HaplotypeScore=0.0;MQ=60.25;MQ0=0;MQRankSum=-1.796;QD=14.8;ReadPosRankSum=-0.364;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,22:44:99:681,0,634
15    27890683    rs1382062    G    T    106.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:63.90:136,0,64
15    28116275    rs7175046    G    C    266.83    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.71;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=10.67;ReadPosRankSum=1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353809    GT:AD:DP:GQ:PL    0/1:14,11:25:99:297,0,414
15    28116282    rs41304383    T    C    271.94    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.868;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=10.46;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353809    GT:AD:DP:GQ:PL    0/1:15,11:26:99:302,0,506
15    28195534    rs11632387    C    T    168.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=12.01;ReadPosRankSum=-1.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382996    GT:AD:DP:GQ:PL    0/1:7,7:14:99:198,0,224
15    28196821    rs7173419    T    C    31.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.22;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353809    GT:AD:DP:GQ:PL    0/1:3,2:5:61.09:61,0,108
15    28200408    rs7170989    T    C    635.02    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.149;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=59.56;MQ0=0;MQRankSum=0.67;QD=11.98;ReadPosRankSum=-0.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478435    GT:AD:DP:GQ:PL    0/1:28,25:53:99:665,0,884
15    28202573    rs11638265    G    A    407.38    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.038;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=16.3;ReadPosRankSum=-0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478435    GT:AD:DP:GQ:PL    0/1:11,14:25:99:437,0,349
15    28211758    rs4778218    A    G    436.04    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=24;Dels=0.0;FS=4.075;HRun=0;HaplotypeScore=0.9987;MQ=58.84;MQ0=0;MQRankSum=-1.431;QD=18.17;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353809    GT:AD:DP:GQ:PL    0/1:9,15:24:99:466,0,290
15    28211921    rs1800411    G    A    457.42    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.476;DB;DP=29;Dels=0.0;FS=7.067;HRun=0;HaplotypeScore=0.9734;MQ=59.04;MQ0=0;MQRankSum=-0.288;QD=15.77;ReadPosRankSum=0.509;SNPEFF_AMINO_ACID_CHANGE=C493;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28211836_28211968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353809    GT:AD:DP:GQ:PL    0/1:12,17:29:99:487,0,392
15    28228644    rs12910433    G    A    624.21    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=43;Dels=0.0;FS=5.299;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.33;QD=14.52;ReadPosRankSum=-1.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353809    GT:AD:DP:GQ:PL    0/1:19,24:43:99:654,0,637
15    28230318    rs1800407    C    T    61.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=13;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.239;QD=4.69;ReadPosRankSum=1.835;SNPEFF_AMINO_ACID_CHANGE=R395Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28230210_28230334;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353809    GT:AD:DP:GQ:PL    0/1:8,4:13:91:91,0,270
15    28231793    rs10852218    T    C    1241.11    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.939;DB;DP=111;Dels=0.0;FS=0.753;HRun=0;HaplotypeScore=0.9665;MQ=59.21;MQ0=0;MQRankSum=1.271;QD=11.18;ReadPosRankSum=0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353809    GT:AD:DP:GQ:PL    0/1:64,47:111:99:1271,0,1930
15    28235773    rs1800404    C    T    1384.46    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=5.503;DB;DP=95;Dels=0.0;FS=1.908;HRun=0;HaplotypeScore=3.8812;MQ=60.0;MQ0=0;MQRankSum=-0.019;QD=14.57;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=A355;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28235722_28235793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354638    GT:AD:DP:GQ:PL    0/1:47,48:95:99:1414,0,1203
15    28356859    rs1129038    C    T    447.99    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.25;DB;DP=31;Dels=0.0;FS=2.251;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.417;QD=14.45;ReadPosRankSum=-0.329;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:13,18:31:99:478,0,367
15    28357230    rs4778245    T    C    993.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1027,78,0
15    28359744    rs7495441    G    A    1023.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1057,78,0
15    28360081    rs7497014    T    C    113.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:146,12,0
15    28361764    rs4778247    C    T    940.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:973,75,0
15    28362459    rs7495875    G    A    115.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
15    28368969    rs11635884    C    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    28368995    rs11074322    C    T    275.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:308,24,0
15    28369975    rs6416602    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    28370389    rs61585051    C    T    772.68    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=5.697;DB;DP=61;Dels=0.0;FS=1.738;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.911;QD=12.67;ReadPosRankSum=0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:33,28:61:99:803,0,861
15    28375872    rs6416603    A    G    601.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:635,48,0
15    28377772    rs8025035    C    T    542.64    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.072;DB;DP=45;Dels=0.0;FS=3.278;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-1.167;QD=12.06;ReadPosRankSum=-1.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:25,20:45:99:573,0,799
15    28378122    rs4778141    T    G    190.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:223,18,0
15    28380518    rs4778249    T    A    1183.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,32:32:96.26:1216,96,0
15    28389508    rs7403363    C    T    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
15    28414665    rs7494786    T    C    1810.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.28;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=S3398;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28414630_28414801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1844,141,0
15    28419497    rs66875833    TA    T    144.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=3;HaplotypeScore=13.3179;IndelType=D;MQ=41.35;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
15    28422609    rs61756153    C    T    625.73    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=1.655;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.685;QD=9.78;ReadPosRankSum=0.243;SNPEFF_AMINO_ACID_CHANGE=S3070;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28422565_28422655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:40,23:63:99:656,0,1177
15    28422819    rs58164482    C    T    67.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.27;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:3,3:6:97.63:98,0,107
15    28427801    rs73362608    A    T    66.46    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.61;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:96,0,29
15    28441817    rs2525936    G    T    114.94    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=50.98;MQ0=0;MQRankSum=0.529;QD=9.58;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:7,5:12:99:145,0,213
15    28443658    rs8041209    G    T    759.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.646;DB;DP=63;Dels=0.0;FS=0.979;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.535;QD=12.06;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:36,27:63:99:790,0,1115
15    28456306    .    A    T    158.08    MQFilter40    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=3.787;DP=62;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=14.96;MQ0=22;MQRankSum=0.499;QD=2.55;ReadPosRankSum=-1.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:43,18:62:99:188,0,176
15    28483001    rs78699119    T    C    31.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.68;MQ0=0;MQRankSum=-1.026;QD=7.77;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:2,2:4:61.07:61,0,68
15    28483186    .    C    T    655.65    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.017;DP=80;Dels=0.0;FS=4.576;HRun=0;HaplotypeScore=1.5115;MQ=28.63;MQ0=7;MQRankSum=1.115;QD=8.2;ReadPosRankSum=-0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:45,35:80:99:686,0,751
15    28483809    rs149204675    G    A    407.81    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=3.225;DB;DP=28;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.8667;MQ=56.43;MQ0=0;MQRankSum=0.507;QD=14.56;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=D1229;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28483748_28483918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:13,15:28:99:438,0,312
15    28499451    .    A    G    200.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DP=30;Dels=0.0;FS=1.9;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.064;QD=6.69;ReadPosRankSum=-1.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:18,12:30:99:231,0,626
15    28499459    rs8036480    T    C    315.36    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.994;DB;DP=32;Dels=0.0;FS=6.872;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=-0.426;QD=9.85;ReadPosRankSum=-1.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:19,13:32:99:345,0,641
15    28502279    rs11631797    A    G    466.96    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=48;Dels=0.0;FS=1.212;HRun=0;HaplotypeScore=0.0;MQ=55.49;MQ0=0;MQRankSum=-2.123;QD=9.73;ReadPosRankSum=0.575;SNPEFF_AMINO_ACID_CHANGE=G815;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28502207_28502407;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:28,20:48:99:497,0,809
15    28510895    rs2240202    G    A    1030.27    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=0.007;DB;DP=61;Dels=0.0;FS=2.376;HRun=0;HaplotypeScore=1.7621;MQ=59.62;MQ0=0;MQRankSum=-0.604;QD=16.89;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:27,34:61:99:1060,0,775
15    28516084    rs8039195    C    T    140.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.08;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,175
15    28517184    .    C    T    41.51    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.69;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
15    28517207    .    A    G    33.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.73;MQ0=0;MQRankSum=-0.736;QD=11.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:64,0,28
15    28517240    rs79979051    A    G    61.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.12;MQ0=0;MQRankSum=-1.231;QD=12.23;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:91,0,67
15    28517436    rs75181529    T    C    220.42    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=53.64;MQ0=0;MQRankSum=-2.662;QD=8.48;ReadPosRankSum=1.08;SNPEFF_AMINO_ACID_CHANGE=P336;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28517361_28517532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:16,10:26:99:250,0,493
15    28517969    rs2016277    A    G    97.19    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.253;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.676;QD=5.4;ReadPosRankSum=1.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:13,5:18:99:127,0,480
15    28518229    rs71467328    C    T    84.24    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=2.228;QD=7.66;ReadPosRankSum=2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    0/1:7,4:11:99:114,0,243
15    28544359    rs1667400    A    C    151.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.99;MQ0=0;QD=25.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261609    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:184,15,0
15    28600134    .    G    A    447.84    MQFilter40    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.931;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.74;MQ0=18;MQRankSum=2.314;QD=3.73;ReadPosRankSum=-1.45;SNPEFF_AMINO_ACID_CHANGE=Q102*;SNPEFF_CODON_CHANGE=Caa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_15_28600102_28600152;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091304.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000424531    GT:AD:DP:GQ:PL    0/1:93,26:120:99:478,0,1358
15    28600158    .    G    A    446.44    MQFilter40    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.709;DP=107;Dels=0.0;FS=1.232;HRun=3;HaplotypeScore=2.482;MQ=32.31;MQ0=13;MQRankSum=-0.52;QD=4.17;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091304.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424531    GT:AD:DP:GQ:PL    0/1:75,32:107:99:476,0,1415
15    28650078    .    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.97;MQ0=8;QD=3.56;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,10:10:6.02:67,6,0
15    28650244    .    A    AAC    266.60    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=20.2362;IndelType=I;MQ=27.29;MQ0=0;QD=44.43;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:309,18,0
15    28798855    .    C    A    125.35    MQFilter40;QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.769;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6648;MQ=18.48;MQ0=44;MQRankSum=0.136;QD=1.67;ReadPosRankSum=1.403;SNPEFF_AMINO_ACID_CHANGE=T27;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28798718_28798912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC138749.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419645    GT:AD:DP:GQ:PL    0/1:62,13:75:99:155,0,369
15    28803398    rs138088246    A    G    122.33    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.68;MQ0=1;MQRankSum=0.684;QD=13.59;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC138749.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419645    GT:AD:DP:GQ:PL    0/1:4,5:9:77.63:152,0,78
15    28924661    rs379103    A    G    348.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.68;MQ0=15;QD=10.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HERC2P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528584    GT:AD:DP:GQ:PL    1/1:0,34:34:36.07:381,36,0
15    28947315    .    G    GC    369.08    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.482;DP=49;FS=0.0;HRun=5;HaplotypeScore=115.0193;IndelType=I;MQ=35.88;MQ0=7;MQRankSum=-0.714;QD=6.05;ReadPosRankSum=-0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    0/1:42,19:49:99:408,0,951
15    28947674    rs2003233    G    A    957.27    MQFilter40    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=4.802;DB;DP=103;Dels=0.0;FS=2.771;HRun=0;HaplotypeScore=0.734;MQ=34.02;MQ0=16;MQRankSum=-0.851;QD=9.29;ReadPosRankSum=-1.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    0/1:54,49:103:99:987,0,823
15    28947844    rs80303640    A    C    986.89    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=133;Dels=0.0;FS=41.883;HRun=1;HaplotypeScore=2.6645;MQ=42.56;MQ0=7;MQRankSum=-6.44;QD=7.42;ReadPosRankSum=-1.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    0/1:73,60:133:99:1017,0,2181
15    28947935    .    C    G    563.15    MQFilter40    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.658;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=21.57;MQ0=21;MQRankSum=1.425;QD=9.88;ReadPosRankSum=-1.279;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    0/1:28,29:57:96.38:593,0,96
15    28948317    rs62009580    C    T    205.31    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.9;MQ0=0;MQRankSum=1.664;QD=17.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    1/1:3,9:12:1.35:234,1,0
15    28948331    rs62009581    G    T    217.31    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.086;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.58;MQ0=0;MQRankSum=1.678;QD=16.72;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    1/1:2,11:13:24.03:250,24,0
15    28953403    .    G    A    410.48    MQFilter40    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.847;DP=60;Dels=0.0;FS=14.271;HRun=0;HaplotypeScore=0.8941;MQ=22.79;MQ0=12;MQRankSum=2.785;QD=6.84;ReadPosRankSum=-0.229;SNPEFF_AMINO_ACID_CHANGE=H8Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28953272_28953559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    0/1:37,23:60:99:440,0,428
15    28953412    .    C    T    540.12    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DP=63;Dels=0.0;FS=11.78;HRun=0;HaplotypeScore=0.6651;MQ=23.28;MQ0=12;MQRankSum=1.856;QD=8.57;ReadPosRankSum=-1.065;SNPEFF_AMINO_ACID_CHANGE=V5I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_28953272_28953559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    0/1:36,27:63:99:570,0,487
15    28954976    .    A    C    114.49    MQFilter40    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.651;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.21;MQ0=11;MQRankSum=-0.553;QD=3.18;ReadPosRankSum=0.961;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340249    GT:AD:DP:GQ:PL    0/1:23,13:36:99:144,0,351
15    28990579    rs117359629    G    A    31.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.64;MQ0=1;QD=10.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC055876.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508764    GT:AD:DP:GQ:PL    1/1:1,2:3:6.01:63,6,0
15    28991161    rs4513070    C    T    85.90    QDFilter2    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=60;Dels=0.0;FS=8.389;HRun=2;HaplotypeScore=0.0;MQ=41.6;MQ0=8;MQRankSum=-5.135;QD=1.43;ReadPosRankSum=1.522;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC055876.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508764    GT:AD:DP:GQ:PL    0/1:39,21:60:99:116,0,1160
15    28991269    rs142516212    T    C    64.73    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=32;Dels=0.0;FS=16.99;HRun=0;HaplotypeScore=0.9469;MQ=45.51;MQ0=0;MQRankSum=-2.867;QD=2.02;ReadPosRankSum=-1.693;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC055876.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508764    GT:AD:DP:GQ:PL    0/1:24,8:32:94.72:95,0,811
15    28991313    rs79519154    G    A    252.29    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DB;DP=25;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=42.9;MQ0=0;MQRankSum=-2.475;QD=10.09;ReadPosRankSum=0.626;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC055876.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508764    GT:AD:DP:GQ:PL    0/1:12,13:25:99:282,0,415
15    28991374    rs76760482    G    A    133.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.29;MQ0=0;QD=26.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC055876.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508764    GT:AD:DP:GQ:PL    1/1:0,5:5:15:167,15,0
15    28996719    .    A    G    56.43    MQFilter40;QDFilter2    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.11;MQ0=50;MQRankSum=-0.953;QD=0.85;ReadPosRankSum=-1.059;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC055876.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508764    GT:AD:DP:GQ:PL    0/1:46,20:66:86.42:86,0,138
15    29034546    .    G    C    52.34    MQFilter40;QDFilter2    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.35;MQ0=28;MQRankSum=0.406;QD=1.5;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430589    GT:AD:DP:GQ:PL    0/1:21,13:34:63.76:82,0,64
15    29034720    rs12101582    G    C    285.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.13;MQ0=0;MQRankSum=0.177;QD=19.07;ReadPosRankSum=1.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC055876.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430589    GT:AD:DP:GQ:PL    0/1:6,9:15:99:316,0,183
15    29050198    rs8040604    G    T    36.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=56.03;MQ0=0;MQRankSum=0.358;QD=7.21;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,2:5:66.03:66,0,107
15    29385149    rs4779760    A    G    367.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.0;MQ0=0;QD=26.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219865    GT:AD:DP:GQ:PL    1/1:0,14:14:39.04:400,39,0
15    29385204    rs4779761    A    G    739.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219865    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:772,60,0
15    29386593    rs8037972    G    A    877.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219865    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:911,72,0
15    29386733    rs2279492    T    C    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219865    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
15    29400379    rs2279483    C    T    886.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=29.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219865    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:920,72,0
15    29415560    rs3751562    G    A    857.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=D534;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_29412455_29415858;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:890,66,0
15    29415698    rs3751563    A    G    413.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=D488;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_29412455_29415858;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:446,33,0
15    29416901    rs2279482    A    G    132.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=16.59;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=V431A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_29416890_29416964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    0/1:2,6:8:50.22:163,0,50
15    29417099    rs12438521    G    C    35.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
15    29418520    rs2256273    C    T    95.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.62;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=R393H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_29418470_29418694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    0/1:2,6:9:61.51:126,0,62
15    29418573    rs2672680    A    G    52.41    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=7.49;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=H375;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_29418470_29418694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    0/1:2,5:7:68.48:82,0,68
15    29418574    rs2256277    T    C    80.95    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=11.56;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=H375R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_29418470_29418694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    0/1:2,5:7:64.19:111,0,64
15    29421014    rs2306934    G    C    480.72    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.85;DB;DP=43;Dels=0.0;FS=12.349;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.51;QD=11.18;ReadPosRankSum=-0.301;SNPEFF_AMINO_ACID_CHANGE=T327;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_29420992_29421067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    0/1:22,21:43:99:511,0,714
15    29421054    rs2306933    C    T    570.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8317;MQ=59.45;MQ0=0;MQRankSum=1.031;QD=13.59;ReadPosRankSum=-0.83;SNPEFF_AMINO_ACID_CHANGE=G314D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_29420992_29421067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    0/1:21,21:42:99:601,0,676
15    29428556    rs8023368    C    G    203.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:237,21,0
15    29429088    rs1877910    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    29429159    rs2292629    A    T    127.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
15    29444130    rs66461020    GC    G    737.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=51.983;IndelType=D;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:780,60,0
15    29526279    rs11071543    C    T    769.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=58.99;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:802,63,0
15    29526409    rs11071544    G    T    1435.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM189A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261275    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1469,111,0
15    30001328    rs17683205    C    T    166    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=15.09;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,152
15    30008856    rs7166878    C    A    1863.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=A1307;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_30008815_30009042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356107    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1897,138,0
15    30008889    rs2229518    G    A    1793.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.454;MQ=59.6;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=A1296;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_30008815_30009042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356107    GT:AD:DP:GQ:PL    1/1:0,57:58:99:1826,138,0
15    30010328    rs72143374    TA    T    30.16    QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=1.544;DB;DP=111;FS=10.691;HRun=20;HaplotypeScore=834.848;IndelType=D;MQ=51.87;MQ0=0;MQRankSum=0.17;QD=0.27;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    0/1:72,23:111:69.18:69,0,569
15    30011427    rs11073215    C    T    415.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:449,33,0
15    30018553    rs4073316    A    T    976.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:1010,75,0
15    30018627    rs7179270    T    C    352.59    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=35;Dels=0.0;FS=2.958;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.513;QD=10.07;ReadPosRankSum=-0.579;SNPEFF_AMINO_ACID_CHANGE=I790V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_30018583_30018683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    0/1:19,16:35:99:383,0,580
15    30020106    rs11073221    A    G    279.51    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.5784;MQ=58.63;MQ0=0;MQRankSum=0.048;QD=16.44;ReadPosRankSum=-0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462916    GT:AD:DP:GQ:PL    0/1:8,9:17:99:310,0,239
15    30026692    rs68147958    C    CT    58.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;FS=0.0;HRun=13;HaplotypeScore=56.5265;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=0.731;QD=5.81;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    0/1:5,5:10:5.56:97,0,6
15    30053684    rs2293186    T    C    452.12    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=20;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.792;QD=22.61;ReadPosRankSum=0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    0/1:7,13:20:99:482,0,228
15    30058297    rs10775231    G    A    214.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
15    30064495    rs1383315    C    T    401.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:435,33,0
15    30070181    rs9920621    C    A    60.53    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=4.66;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    0/1:9,4:13:90.53:91,0,340
15    30070198    rs1904812    A    C    423.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346128    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:456,33,0
15    30384693    .    C    G    146.74    MQFilter40    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=1.1;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.58;MQ0=3;MQRankSum=1.767;QD=5.06;ReadPosRankSum=0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA8J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341650    GT:AD:DP:GQ:PL    0/1:10,19:29:9.54:176,0,10
15    30516461    rs79014356    A    C    182.29    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=2.294;DB;DP=67;Dels=0.0;FS=12.903;HRun=1;HaplotypeScore=0.9578;MQ=40.76;MQ0=8;MQRankSum=-1.161;QD=2.72;ReadPosRankSum=-0.893;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:47,20:67:99:212,0,1326
15    30516531    rs72723299    A    G    1066.38    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.544;DB;DP=168;Dels=0.0;FS=5.887;HRun=0;HaplotypeScore=0.8941;MQ=38.54;MQ0=4;MQRankSum=-9.392;QD=6.35;ReadPosRankSum=-1.172;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:105,63:168:99:1096,0,3224
15    30516622    .    C    T    755.06    MQFilter40    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=4.675;DP=171;Dels=0.0;FS=1.012;HRun=0;HaplotypeScore=1.782;MQ=25.18;MQ0=62;MQRankSum=2.837;QD=4.42;ReadPosRankSum=-0.219;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:123,48:171:99:785,0,1505
15    30663407    rs149768281    C    T    43.69    MQFilter40;QDFilter2    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=2.052;DB;DP=111;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=8.45;MQ0=90;MQRankSum=0.187;QD=0.39;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRFAM7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299847    GT:AD:DP:GQ:PL    0/1:84,27:111:73.69:74,0,159
15    30664453    rs149526715    C    T    579.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.55;MQ0=19;QD=13.47;SNPEFF_AMINO_ACID_CHANGE=T140;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_30664350_30664544;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRFAM7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299847    GT:AD:DP:GQ:PL    1/1:12,31:43:63.06:612,63,0
15    30675505    .    C    G    322.28    MQFilter40    AB=0.894;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.67;MQ0=97;MQRankSum=0.788;QD=2.85;ReadPosRankSum=0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRFAM7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299847    GT:AD:DP:GQ:PL    0/1:101,12:113:61.06:352,0,61
15    30696515    .    C    A    63.30    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.1;MQ0=47;MQRankSum=0.727;QD=1.24;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=A502S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_30696455_30696552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019322.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327271    GT:AD:DP:GQ:PL    1/1:46,5:51:9.02:95,9,0
15    30696517    .    C    T    63.30    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.24;MQ0=45;MQRankSum=0.727;QD=1.29;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=R501H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_30696455_30696552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019322.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327271    GT:AD:DP:GQ:PL    1/1:44,5:49:9.02:95,9,0
15    30699639    .    A    C    62.50    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=143;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=4.13;MQ0=139;QD=0.44;SNPEFF_AMINO_ACID_CHANGE=S164A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_30699478_30699734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019322.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544495    GT:AD:DP:GQ:PL    1/1:20,123:143:9.02:95,9,0
15    30700263    rs2564642    T    C    2178.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8218;MQ=33.54;MQ0=7;QD=23.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019322.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327271    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2212,198,0
15    30700278    rs62016505    C    T    1541.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3609;MQ=26.8;MQ0=6;QD=22.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019322.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327271    GT:AD:DP:GQ:PL    1/1:1,68:69:99:1575,144,0
15    30770870    .    G    A    48    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=7.29;MQ0=47;QD=0.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC019322.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399971    GT:AD:DP:GQ:PL    1/1:0,57:57:9:80,9,0
15    30771310    .    A    C    186.05    MQFilter40;QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=3.197;DP=100;Dels=0.0;FS=5.193;HRun=0;HaplotypeScore=0.0;MQ=19.22;MQ0=43;MQRankSum=-1.344;QD=1.86;ReadPosRankSum=1.344;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC019322.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399971    GT:AD:DP:GQ:PL    0/1:81,19:100:99:216,0,790
15    30851899    .    A    T    37.39    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=18.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026150.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333156    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
15    30888946    .    T    A    693.50    MQFilter40    AC=2;AF=1.00;AN=2;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=15.42;MQ0=40;QD=9.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399994    GT:AD:DP:GQ:PL    1/1:31,39:70:77.99:727,78,0
15    30896284    rs188447192    A    T    43.78    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=14.21;MQ0=3;MQRankSum=0.717;QD=3.13;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399994    GT:AD:DP:GQ:PL    0/1:8,6:14:47.10:74,0,47
15    30898293    rs4583199    C    T    325.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.34;MQ0=4;QD=14.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:2,21:23:35.99:358,36,0
15    30898332    rs143536437    C    T    174.61    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.52;MQ0=2;MQRankSum=1.792;QD=10.91;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:8,8:16:99:205,0,140
15    30899125    .    G    A    56.74    MQFilter40;QDFilter2    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.879;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5518;MQ=18.4;MQ0=7;MQRankSum=0.539;QD=0.72;ReadPosRankSum=1.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:51,27:79:86.73:87,0,243
15    30900628    .    C    G    1025.59    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.3095;MQ=29.85;MQ0=12;MQRankSum=-0.257;QD=15.54;ReadPosRankSum=-0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:10,56:66:62.74:1059,63,0
15    30900637    .    T    G    303.74    MQFilter40    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.292;DP=68;Dels=0.01;FS=3.518;HRun=0;HaplotypeScore=2.8315;MQ=34.66;MQ0=11;MQRankSum=-0.539;QD=4.4;ReadPosRankSum=0.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:41,27:68:99:334,0,815
15    30900873    .    T    C    598.18    MQFilter40    AC=2;AF=1.00;AN=2;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.61;MQ0=5;QD=17.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:0,35:35:57.15:631,57,0
15    30900895    rs80198225    G    A    49.25    MQFilter40    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.93;MQ0=4;MQRankSum=0.884;QD=2.59;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:13,6:19:79.24:79,0,113
15    30902964    .    G    C    167.73    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.57;MQ0=111;QD=1.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:103,13:116:18.05:201,18,0
15    30905994    .    G    A    371.18    MQFilter40    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.192;DP=149;Dels=0.0;FS=2.535;HRun=1;HaplotypeScore=1.445;MQ=14.78;MQ0=68;MQRankSum=0.929;QD=2.49;ReadPosRankSum=0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:98,51:149:99:401,0,629
15    30906165    .    T    C    95.74    MQFilter40;QDFilter2    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.973;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=10.36;MQ0=77;MQRankSum=0.7;QD=0.85;ReadPosRankSum=1.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:84,29:113:99:126,0,246
15    30906604    .    G    C    43.79    MQFilter40;QDFilter2    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=3.508;DP=135;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=9.28;MQ0=65;MQRankSum=-0.241;QD=0.32;ReadPosRankSum=1.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:86,49:135:50.10:74,0,50
15    30922783    .    T    A    42.75    MQFilter40;QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.9;MQ0=0;MQRankSum=-0.175;QD=1.38;ReadPosRankSum=-2.125;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428041    GT:AD:DP:GQ:PL    0/1:25,6:31:72.74:73,0,896
15    30925921    .    A    AT    80.33    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=11;HaplotypeScore=22.8995;IndelType=I;MQ=50.73;MQ0=1;QD=10.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428041    GT:AD:DP:GQ:PL    1/1:3,5:7:12.02:122,12,0
15    30927867    rs141692578    A    G    618.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.425;DB;DP=52;Dels=0.0;FS=5.429;HRun=1;HaplotypeScore=0.0;MQ=51.12;MQ0=1;MQRankSum=-0.466;QD=11.9;ReadPosRankSum=-0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428041    GT:AD:DP:GQ:PL    0/1:26,26:52:99:649,0,734
15    30936939    rs138514498    CTG    C    3730.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;FS=0.0;HRun=0;HaplotypeScore=818.5593;IndelType=D;MQ=44.27;MQ0=1;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:105,11:115:99:3730,295,0
15    30936940    rs35282460    TG    T    3790.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;FS=0.0;HRun=1;HaplotypeScore=720.9925;IndelType=D;MQ=45.4;MQ0=1;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:19,87:104:99:3790,307,0
15    30936942    rs34886023    TC    T    3682.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;FS=0.0;HRun=1;HaplotypeScore=706.3738;IndelType=D;MQ=44.85;MQ0=1;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:14,88:100:99:3682,296,0
15    30937124    rs114298729    T    A    37.96    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.29;MQ0=0;MQRankSum=-0.727;QD=9.49;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:68,0,32
15    31042778    rs12902692    C    T    257.82    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.578;DB;DP=55;Dels=0.0;FS=7.425;HRun=1;HaplotypeScore=0.0;MQ=45.15;MQ0=0;MQRankSum=0.91;QD=4.69;ReadPosRankSum=0.526;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:41,13:55:99:288,0,1061
15    31089526    rs798088    A    G    957.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.882;DB;DP=72;Dels=0.0;FS=4.963;HRun=2;HaplotypeScore=0.0;MQ=56.99;MQ0=0;MQRankSum=0.995;QD=13.12;ReadPosRankSum=0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:36,36:72:99:988,0,1132
15    31090389    rs11070609    G    A    1259.73    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.831;DB;DP=84;Dels=0.0;FS=4.074;HRun=0;HaplotypeScore=1.9454;MQ=58.62;MQ0=0;MQRankSum=-1.036;QD=15.0;ReadPosRankSum=-0.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:40,43:84:99:1290,0,1120
15    31090456    rs12902714    G    A    1762.10    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.934;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8519;MQ=53.41;MQ0=0;MQRankSum=0.402;QD=14.21;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:60,62:124:99:1792,0,1643
15    31090601    rs1852033    T    C    1440.62    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.519;DB;DP=127;Dels=0.0;FS=8.083;HRun=0;HaplotypeScore=3.4141;MQ=51.51;MQ0=0;MQRankSum=1.824;QD=11.34;ReadPosRankSum=1.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:68,58:127:99:1471,0,1410
15    31090831    rs7166578    C    A    1029.11    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DB;DP=80;Dels=0.0;FS=4.444;HRun=0;HaplotypeScore=0.8941;MQ=44.53;MQ0=4;MQRankSum=0.504;QD=12.86;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:44,35:80:99:1059,0,1164
15    31090995    rs12904833    C    T    1751.29    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.904;DB;DP=108;Dels=0.0;FS=0.83;HRun=0;HaplotypeScore=4.9196;MQ=50.25;MQ0=0;MQRankSum=0.086;QD=16.22;ReadPosRankSum=1.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:47,61:108:99:1781,0,1296
15    31091201    rs798089    C    A    319.54    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=23;Dels=0.0;FS=1.899;HRun=0;HaplotypeScore=0.0;MQ=55.34;MQ0=0;MQRankSum=0.837;QD=13.89;ReadPosRankSum=-0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:10,13:23:99:350,0,258
15    31092808    .    G    C    123.25    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.409;DP=24;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.8321;MQ=25.21;MQ0=0;MQRankSum=-0.85;QD=5.14;ReadPosRankSum=-1.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:15,9:24:99:153,0,296
15    31092949    rs2091235    T    C    205.28    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.22;MQ0=1;MQRankSum=-2.576;QD=7.9;ReadPosRankSum=-0.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:17,9:26:99:235,0,543
15    31092951    rs34190638    G    A    204.14    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.028;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.22;MQ0=1;MQRankSum=-2.519;QD=7.85;ReadPosRankSum=-0.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:17,9:26:99:234,0,536
15    31093202    rs36093771    G    A    203.97    MQFilter40    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=0.836;DB;DP=48;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.0;MQ=21.16;MQ0=25;MQRankSum=0.76;QD=4.25;ReadPosRankSum=1.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:37,11:48:99:234,0,258
15    31093281    rs808869    T    C    140.33    MQFilter40    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=44;Dels=0.0;FS=2.447;HRun=1;HaplotypeScore=0.5784;MQ=19.45;MQ0=19;MQRankSum=-2.136;QD=3.19;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:34,10:44:99:170,0,368
15    31093425    rs798093    A    C    897.54    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.594;DB;DP=112;Dels=0.0;FS=31.563;HRun=1;HaplotypeScore=3.4922;MQ=43.28;MQ0=5;MQRankSum=-4.718;QD=8.01;ReadPosRankSum=-2.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:62,50:112:99:928,0,1918
15    31093529    rs35480234    C    T    1867.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.277;DB;DP=157;Dels=0.0;FS=3.958;HRun=0;HaplotypeScore=1.5362;MQ=52.05;MQ0=1;MQRankSum=-2.081;QD=11.89;ReadPosRankSum=0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:85,71:157:99:1897,0,2191
15    31093647    rs183010080    T    G    51.38    QDFilter2    AB=0.902;AC=1;AF=0.50;AN=2;BaseQRankSum=2.864;DB;DP=133;Dels=0.0;FS=28.537;HRun=2;HaplotypeScore=4.6752;MQ=48.41;MQ0=0;MQRankSum=-5.231;QD=0.39;ReadPosRankSum=0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:119,13:133:81.37:81,0,3379
15    31093881    rs7163291    C    T    651.17    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=0.128;DB;DP=66;Dels=0.0;FS=7.396;HRun=0;HaplotypeScore=0.734;MQ=58.05;MQ0=0;MQRankSum=2.663;QD=9.87;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:40,26:66:99:681,0,1226
15    31110071    rs3815112    A    G    200.50    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.543;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.97;MQ0=0;MQRankSum=-3.748;QD=8.35;ReadPosRankSum=0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:14,10:24:99:230,0,432
15    31110226    rs798111    A    G    62.92    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=12;Dels=0.0;FS=13.222;HRun=0;HaplotypeScore=0.0;MQ=48.35;MQ0=1;MQRankSum=-2.383;QD=5.24;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:7,5:12:92.91:93,0,193
15    31110279    rs798112    G    A    277.15    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DB;DP=17;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=49.04;MQ0=0;MQRankSum=-2.039;QD=16.3;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:5,12:17:99:307,0,130
15    31110418    rs3815126    A    C    177.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.81;MQ0=0;QD=25.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:210,18,0
15    31129037    rs11070624    G    A    210.71    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.752;DB;DP=17;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.7887;MQ=57.46;MQ0=0;MQRankSum=0.752;QD=12.39;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:10,7:17:99:241,0,219
15    31129211    rs798086    C    G    324.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:358,27,0
15    31197564    rs4779794    G    A    381.57    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.707;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8268;MQ=60.0;MQ0=0;MQRankSum=-0.298;QD=10.31;ReadPosRankSum=-0.235;SNPEFF_AMINO_ACID_CHANGE=G233E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31196715_31198100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000362065    GT:AD:DP:GQ:PL    0/1:23,14:37:99:412,0,738
15    31203093    rs3794594    C    T    112.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.01;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:3,4:7:97.08:142,0,97
15    31210651    rs2293314    A    G    64.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.84;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:2,3:5:64.27:94,0,64
15    31212684    rs10163148    G    C    393.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.27;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.347;QD=18.72;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:9,12:21:99:423,0,237
15    31214649    rs1474382    A    G    166.11    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9463;MQ=60.0;MQ0=0;MQRankSum=-1.54;QD=8.74;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:11,8:19:99:196,0,406
15    31218164    rs2959037    T    C    1693.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1727,150,0
15    31220709    rs61136501    T    TTGTG    1731.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=0;HaplotypeScore=361.8991;IndelType=I;MQ=47.04;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:23,15:51:90.30:1774,90,0
15    31223026    rs3794596    C    G    74.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.98;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:105,0,66
15    31229420    rs2955795    T    C    996.18    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.633;DB;DP=74;Dels=0.0;FS=2.219;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.724;QD=13.46;ReadPosRankSum=-0.724;SNPEFF_AMINO_ACID_CHANGE=H1005;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31229322_31229462;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000362065    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1026,0,1076
15    31234064    rs6493352    C    T    606.26    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.687;DB;DP=53;Dels=0.0;FS=11.501;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.969;QD=11.44;ReadPosRankSum=-0.762;SNPEFF_AMINO_ACID_CHANGE=R648H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31231144_31234275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435680    GT:AD:DP:GQ:PL    0/1:33,20:53:99:636,0,1071
15    31244083    rs2955790    T    G    395.54    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.346;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.334;QD=15.21;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:12,14:26:99:426,0,423
15    31244263    rs2955789    C    T    548.42    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.63;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.618;QD=10.16;ReadPosRankSum=0.672;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:34,20:54:99:578,0,1164
15    31245880    rs1404467    C    T    355.88    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=3.507;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=58.78;MQ0=0;MQRankSum=0.887;QD=18.73;ReadPosRankSum=-1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:7,12:19:99:386,0,174
15    31246840    rs34294266    A    G    427.81    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.062;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.351;QD=14.26;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:16,14:30:99:458,0,553
15    31251333    rs11340006    GA    G    92.25    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.976;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=80.23;IndelType=D;MQ=59.49;MQ0=0;MQRankSum=-0.342;QD=3.84;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:15,9:24:99:131,0,280
15    31251366    rs2949573    G    A    207.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.119;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.6;MQ0=0;MQRankSum=2.384;QD=11.52;ReadPosRankSum=-1.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:9,9:18:99:237,0,289
15    31260448    rs2955778    A    G    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
15    31267147    rs1133642    C    T    649.15    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.176;DB;DP=48;Dels=0.0;FS=6.062;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.475;QD=13.52;ReadPosRankSum=-0.537;SNPEFF_AMINO_ACID_CHANGE=E106;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31267134_31267206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425768    GT:AD:DP:GQ:PL    0/1:25,23:48:99:679,0,886
15    31283136    rs3743231    A    C    68.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.61;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:2,3:5:65.60:98,0,66
15    31294343    rs12898290    A    T    2128.97    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.445;DB;DP=163;Dels=0.0;FS=6.931;HRun=3;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.649;QD=13.06;ReadPosRankSum=0.68;SNPEFF_AMINO_ACID_CHANGE=H1498Q;SNPEFF_CODON_CHANGE=caT/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31293553_31295273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397793    GT:AD:DP:GQ:PL    0/1:83,80:163:99:2159,0,2488
15    31294714    rs3784589    C    A    1138.56    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.596;DB;DP=89;Dels=0.0;FS=6.879;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.991;QD=12.79;ReadPosRankSum=-0.485;SNPEFF_AMINO_ACID_CHANGE=E1375*;SNPEFF_CODON_CHANGE=Gaa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_15_31293553_31295273;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000397793    GT:AD:DP:GQ:PL    0/1:51,38:89:99:1169,0,1684
15    31329730    rs2911852    G    A    129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
15    31329944    rs12911350    G    A    818.79    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.344;DB;DP=66;Dels=0.0;FS=0.968;HRun=0;HaplotypeScore=1.4972;MQ=59.65;MQ0=0;MQRankSum=-0.748;QD=12.41;ReadPosRankSum=0.204;SNPEFF_AMINO_ACID_CHANGE=N825;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31329914_31330045;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397793    GT:AD:DP:GQ:PL    0/1:39,27:66:99:849,0,1037
15    31330280    rs2288242    A    G    396.25    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.432;DB;DP=30;Dels=0.0;FS=5.71;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.143;QD=13.21;ReadPosRankSum=0.769;SNPEFF_AMINO_ACID_CHANGE=N780;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31330247_31330369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397793    GT:AD:DP:GQ:PL    0/1:16,14:30:99:426,0,543
15    31330313    rs12913672    A    G    287.44    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.38;DB;DP=24;Dels=0.0;FS=3.796;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.651;QD=11.98;ReadPosRankSum=-0.403;SNPEFF_AMINO_ACID_CHANGE=Y769;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31330247_31330369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397793    GT:AD:DP:GQ:PL    0/1:14,10:24:99:317,0,478
15    31332239    rs12708421    C    A    338.17    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.909;QD=24.16;ReadPosRankSum=0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:4,10:14:99:368,0,108
15    31333960    rs7179304    A    G    34.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
15    31338500    rs12907509    T    G    347.05    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.801;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.601;QD=15.77;ReadPosRankSum=-0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:9,13:22:99:377,0,302
15    31341364    rs7173280    T    C    73.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.31;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,109
15    31341773    rs10162957    C    T    304.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=25.42;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:3,9:12:78.05:335,0,78
15    31342498    rs17815780    A    T    389.65    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.814;DB;DP=31;Dels=0.0;FS=4.629;HRun=3;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.576;QD=12.57;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:14,17:31:99:420,0,458
15    31357138    rs919001    A    G    894.66    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.593;DB;DP=64;Dels=0.0;FS=3.438;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=13.98;ReadPosRankSum=-0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:35,29:64:99:925,0,1237
15    31359203    rs8039189    G    T    246.10    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.938;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=10.7;ReadPosRankSum=0.961;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:13,10:23:99:276,0,372
15    31359211    rs11354407    CA    C    317.95    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=4.215;DB;DP=26;FS=2.269;HRun=4;HaplotypeScore=112.6577;IndelType=D;MQ=58.2;MQ0=0;MQRankSum=-1.115;QD=12.23;ReadPosRankSum=0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:14,12:26:99:357,0,464
15    31359333    rs188852505    C    T    659.42    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.436;DB;DP=75;Dels=0.0;FS=1.974;HRun=0;HaplotypeScore=2.564;MQ=59.69;MQ0=0;MQRankSum=-1.651;QD=8.79;ReadPosRankSum=1.336;SNPEFF_AMINO_ACID_CHANGE=R162Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31359266_31359390;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397793    GT:AD:DP:GQ:PL    0/1:48,27:75:99:689,0,1336
15    31359552    rs3784600    C    T    114.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=14.3;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:4,4:8:99:144,0,134
15    31362352    rs2241493    C    T    3055.83    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.056;DB;DP=221;DS;Dels=0.0;FS=4.227;HRun=3;HaplotypeScore=1.6281;MQ=59.83;MQ0=0;MQRankSum=-0.447;QD=13.83;ReadPosRankSum=0.473;SNPEFF_AMINO_ACID_CHANGE=S32N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31362234_31362429;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397793    GT:AD:DP:GQ:PL    0/1:106,115:221:99:3086,0,3308
15    31362494    rs34491369    A    G    555.06    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.591;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.682;QD=10.47;ReadPosRankSum=1.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:32,21:53:99:585,0,1136
15    31368890    rs2241496    T    C    121.83    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.37;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:152,0,26
15    31368915    rs2241497    C    G    152.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=16.89;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:4,5:9:99:182,0,138
15    31369123    rs4779816    A    G    828.54    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.831;DB;DP=59;Dels=0.0;FS=5.136;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.842;QD=14.04;ReadPosRankSum=0.22;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_15_31369108_31369187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000397795    GT:AD:DP:GQ:PL    0/1:28,31:59:99:859,0,859
15    31369223    rs4779817    C    T    458.09    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=18.32;ReadPosRankSum=0.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:9,16:25:99:488,0,244
15    31776210    .    TGGC    T    118.68    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=71.4467;IndelType=D;MQ=44.47;MQ0=0;QD=19.78;SNPEFF_AMINO_ACID_CHANGE=A689-;SNPEFF_CODON_CHANGE=gcc/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_15_31773281_31776927;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUD7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307050    GT:AD:DP:GQ:PL    1/1:1,5:6:12.04:160,12,0
15    31779595    rs62004065    G    A    280.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5767;MQ=59.36;MQ0=0;MQRankSum=-0.886;QD=7.79;ReadPosRankSum=0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:24,12:36:99:310,0,789
15    31779838    rs16956777    C    G    101.38    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.44;MQ0=0;MQRankSum=0.466;QD=9.22;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:6,5:11:99:131,0,209
15    31793930    rs7164569    A    G    2172.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=L371;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_31793893_31794042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTUD7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307050    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2205,172,0
15    31795669    rs3812925    T    C    44.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.12;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:1,3:4:30.28:74,0,30
15    31862437    rs12915326    C    T    738.86    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=4.467;DB;DP=47;Dels=0.0;FS=5.268;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.97;QD=15.72;ReadPosRankSum=-0.565;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:22,25:47:99:769,0,645
15    31862448    rs1459198    C    T    1567.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1601,117,0
15    31862529    rs12898674    G    A    225.09    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.762;QD=22.51;ReadPosRankSum=-1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:3,7:10:55.79:255,0,56
15    32322929    rs2292571    G    A    85.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_AMINO_ACID_CHANGE=A44;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_32322691_32322939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454250    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
15    32393486    rs34476605    C    CTT    2011.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;DB;DP=107;FS=0.0;HRun=15;HaplotypeScore=807.9639;IndelType=I;MQ=54.55;MQ0=0;MQRankSum=-1.589;QD=18.8;ReadPosRankSum=-0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306901    GT:AD:DP:GQ:PL    1/1:24,41:107:99:2053,118,0
15    32393663    rs28650375    C    A    1364.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=53.8;MQ0=0;QD=31.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306901    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1398,120,0
15    32450062    .    C    T    129.16    MQFilter40    AC=2;AF=1.00;AN=2;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.26;MQ0=2;QD=11.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306901    GT:AD:DP:GQ:PL    1/1:1,10:11:18.01:162,18,0
15    32450704    .    G    A    517.58    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.012;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7234;MQ=25.93;MQ0=15;MQRankSum=1.336;QD=5.88;ReadPosRankSum=1.79;SNPEFF_AMINO_ACID_CHANGE=T140;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_32450613_32450807;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437966    GT:AD:DP:GQ:PL    0/1:49,38:88:99:548,0,877
15    32460419    .    C    T    38.10    MQFilter40;QDFilter2    AB=0.171;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.63;MQ0=35;MQRankSum=-0.736;QD=0.93;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=G242;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_32460141_32461086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455693    GT:AD:DP:GQ:PL    0/1:7,34:41:14.67:68,0,15
15    32620127    rs3809581    G    A    397.67    MQFilter40    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.895;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3302;MQ=25.59;MQ0=14;MQRankSum=-0.768;QD=8.12;ReadPosRankSum=0.188;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,27:49:99:428,0,263
15    32686365    .    A    G    896.19    MQFilter40    AC=2;AF=1.00;AN=2;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=30.74;MQ0=14;QD=20.84;SNPEFF_AMINO_ACID_CHANGE=L397P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_32686346_32686434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-395E19.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000510574    GT:AD:DP:GQ:PL    1/1:14,29:43:78.20:929,78,0
15    32686392    .    T    C    378.54    MQFilter40    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.565;DP=47;Dels=0.0;FS=10.248;HRun=1;HaplotypeScore=0.0;MQ=35.01;MQ0=8;MQRankSum=1.544;QD=8.05;ReadPosRankSum=-0.794;SNPEFF_AMINO_ACID_CHANGE=Q388R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_32686346_32686434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-395E19.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000510574    GT:AD:DP:GQ:PL    0/1:32,15:47:99:409,0,712
15    32686530    rs144099523    A    T    324.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.27;MQ0=14;QD=12.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-395E19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510574    GT:AD:DP:GQ:PL    1/1:14,12:26:33.08:357,33,0
15    32693850    .    G    GA    145.60    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.363;DP=16;FS=0.0;HRun=12;HaplotypeScore=53.9532;IndelType=I;MQ=40.16;MQ0=1;MQRankSum=1.733;QD=8.09;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC139426.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435655    GT:AD:DP:GQ:PL    0/1:10,8:16:99:185,0,127
15    32744831    .    T    C    32.97    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.66;MQ0=31;QD=0.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-632K20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414865    GT:AD:DP:GQ:PL    1/1:0,38:38:8.94:65,9,0
15    32820880    rs62003033    C    G    472.24    MQFilter40    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=20.78;MQ0=18;MQRankSum=0.734;QD=7.87;ReadPosRankSum=-0.414;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC135983.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454486    GT:AD:DP:GQ:PL    0/1:23,37:60:99:502,0,212
15    32820915    rs140705101    G    A    32.97    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=8.2;MQ0=13;QD=1.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC135983.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454486    GT:AD:DP:GQ:PL    1/1:0,21:21:8.94:65,9,0
15    32821239    .    C    T    153.79    MQFilter40    AC=2;AF=1.00;AN=2;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.75;MQ0=47;QD=2.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC135983.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454486    GT:AD:DP:GQ:PL    1/1:0,59:59:21.01:187,21,0
15    32915945    rs113918912    G    A    157.21    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=22.46;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361627    GT:AD:DP:GQ:PL    0/1:2,5:7:57.96:187,0,58
15    32917091    .    T    C    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361627    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
15    32926076    rs11632524    C    T    206.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361627    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:239,18,0
15    32971758    rs3817592    G    A    56.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=7.02;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300175    GT:AD:DP:GQ:PL    0/1:5,3:8:86.13:86,0,178
15    32971934    rs7177843    C    T    1556.69    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.251;DB;DP=122;Dels=0.0;FS=0.748;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.045;QD=12.76;ReadPosRankSum=1.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300175    GT:AD:DP:GQ:PL    0/1:67,55:122:99:1587,0,2037
15    32984196    rs6494593    A    G    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470349    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
15    32988596    rs3825861    G    A    66.49    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.26;MQ0=0;MQRankSum=0.55;QD=7.39;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470349    GT:AD:DP:GQ:PL    0/1:3,5:8:96.49:96,0,103
15    33023486    rs12915554    C    A    695.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300177    GT:AD:DP:GQ:PL    1/1:0,20:21:57.18:729,57,0
15    33180232    rs12595237    A    G    183.86    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=20.43;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:2,7:9:55.34:214,0,55
15    33191023    rs173224    A    G    1364.79    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.826;DB;DP=81;Dels=0.0;FS=0.884;HRun=0;HaplotypeScore=1.929;MQ=60.0;MQ0=0;MQRankSum=-0.147;QD=16.85;ReadPosRankSum=-0.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1395,0,1073
15    33191986    rs112769345    G    GA    147.61    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=48.1078;IndelType=I;MQ=60.15;MQ0=0;MQRankSum=0.578;QD=7.03;ReadPosRankSum=-0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:13,8:21:99:187,0,178
15    33192236    rs75033201    G    T    79.21    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.034;DB;DP=223;DS;Dels=0.0;FS=199.706;HRun=2;HaplotypeScore=21.9471;MQ=57.26;MQ0=0;MQRankSum=-1.07;QD=0.36;ReadPosRankSum=0.895;SNPEFF_AMINO_ACID_CHANGE=Q977K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33192180_33192326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:156,66:223:99:109,0,4975
15    33200804    rs71965189    CAA    C    78.08    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=38;FS=8.049;HRun=20;HaplotypeScore=427.7719;IndelType=D;MQ=40.04;MQ0=0;MQRankSum=0.047;QD=2.05;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:22,7:38:99:117,0,314
15    33256192    .    GGTAT    G    1132.81    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=6.228;DP=55;FS=0.0;HRun=0;HaplotypeScore=583.7057;IndelType=D;MQ=46.96;MQ0=0;MQRankSum=-5.808;QD=20.6;ReadPosRankSum=1.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:32,23:55:99:1172,0,2271
15    33256215    rs74014361    G    A    242.09    HaplotypeScoreFilter13    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=5.972;DB;DP=74;Dels=0.04;FS=0.0;HRun=1;HaplotypeScore=49.4929;MQ=45.34;MQ0=0;MQRankSum=-6.058;QD=3.14;ReadPosRankSum=-1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:38,30:74:99:272,0,1032
15    33256217    .    T    TAC    1670.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.405;DP=79;FS=0.0;HRun=0;HaplotypeScore=780.3409;IndelType=I;MQ=45.6;MQ0=0;MQRankSum=-0.502;QD=20.88;ReadPosRankSum=-1.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    1/1:42,22:79:99:1713,100,0
15    33256251    rs11637012    T    C    154.35    QDFilter2    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.242;DB;DP=105;Dels=0.0;FS=3.579;HRun=0;HaplotypeScore=5.4157;MQ=50.93;MQ0=0;MQRankSum=-3.733;QD=1.47;ReadPosRankSum=-3.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:59,44:105:99:184,0,1685
15    33261232    rs2930131    G    A    392.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_AMINO_ACID_CHANGE=P667;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33260915_33261678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:426,33,0
15    33261838    rs7168080    T    C    103.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.851;QD=10.4;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,174
15    33300291    rs11630735    A    C    360.54    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=33;Dels=0.0;FS=3.746;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.621;QD=10.93;ReadPosRankSum=-0.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:19,14:33:99:391,0,641
15    33300482    rs343925    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    33356935    rs2306278    T    G    94.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=13.56;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:3,4:7:99:125,0,100
15    33357262    rs2306277    A    G    1993.92    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=150;Dels=0.0;FS=1.76;HRun=2;HaplotypeScore=1.9367;MQ=59.16;MQ0=0;MQRankSum=0.892;QD=13.29;ReadPosRankSum=-1.418;SNPEFF_AMINO_ACID_CHANGE=L463P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33357158_33357275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:77,73:150:99:2024,0,2586
15    33359370    rs11072170    C    T    1522.93    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.829;DB;DP=118;Dels=0.0;FS=1.478;HRun=0;HaplotypeScore=1.9466;MQ=60.0;MQ0=0;MQRankSum=-1.381;QD=12.91;ReadPosRankSum=-0.637;SNPEFF_AMINO_ACID_CHANGE=G239E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33358712_33360085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:64,54:118:99:1553,0,2012
15    33359574    rs11858145    C    A    1748.89    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=139;Dels=0.0;FS=1.421;HRun=1;HaplotypeScore=2.6147;MQ=59.83;MQ0=0;MQRankSum=0.037;QD=12.58;ReadPosRankSum=-0.667;SNPEFF_AMINO_ACID_CHANGE=G171V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33358712_33360085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334528    GT:AD:DP:GQ:PL    0/1:75,64:139:99:1779,0,2306
15    33446879    rs1399077    G    T    209.02    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=19.0;ReadPosRankSum=0.896;SNPEFF_AMINO_ACID_CHANGE=P79;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33445249_33447246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC090098.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320930    GT:AD:DP:GQ:PL    0/1:4,7:11:99:239,0,134
15    33446947    rs1399078    A    C    279.79    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.113;QD=17.49;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=S57A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33445249_33447246;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC090098.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320930    GT:AD:DP:GQ:PL    0/1:5,11:16:99:310,0,160
15    33533615    rs72723472    G    T    70.54    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.08;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMCO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526835    GT:AD:DP:GQ:PL    0/1:3,4:7:99:101,0,100
15    33533625    rs72723473    A    G    125.24    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.92;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMCO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526835    GT:AD:DP:GQ:PL    0/1:4,5:9:99:155,0,137
15    33533869    rs55785768    G    A    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=7.23;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMCO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526835    GT:AD:DP:GQ:PL    0/1:2,4:6:73.38:73,0,74
15    33533971    rs77483789    C    T    35.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.78;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMCO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526835    GT:AD:DP:GQ:PL    0/1:1,2:3:26.23:65,0,26
15    33535057    rs4779612    C    T    195.71    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=27.96;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMCO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526835    GT:AD:DP:GQ:PL    0/1:1,6:7:18.94:226,0,19
15    33538908    rs11630201    C    T    288.24    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.224;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=16.96;ReadPosRankSum=-1.395;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMCO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529623    GT:AD:DP:GQ:PL    0/1:8,9:17:99:318,0,227
15    33757840    rs2596163    G    A    3442.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389232    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3442,253,0
15    33765761    rs2245508    A    G    1305.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1339,105,0
15    33795710    rs2572204    A    G    652.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:686,57,0
15    33795775    rs41279198    G    A    772.91    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.845;DB;DP=55;Dels=0.0;FS=4.65;HRun=0;HaplotypeScore=1.9981;MQ=60.0;MQ0=0;MQRankSum=-0.685;QD=14.05;ReadPosRankSum=1.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:30,25:55:99:803,0,864
15    33795950    rs3751634    G    A    1081.12    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.114;DB;DP=63;Dels=0.0;FS=6.733;HRun=2;HaplotypeScore=2.6204;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=17.16;ReadPosRankSum=1.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:27,36:63:99:1111,0,795
15    33831295    rs2117574    C    T    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
15    33840414    rs1435100    A    G    1166.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.39;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,37:38:93.30:1199,93,0
15    33842222    rs1865496    C    G    525.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:559,42,0
15    33855345    rs2304379    G    A    695.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:729,54,0
15    33858581    rs7164455    C    T    92.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=18.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
15    33872177    rs674155    C    T    3182.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3937;MQ=59.76;MQ0=0;QD=32.81;SNPEFF_AMINO_ACID_CHANGE=S423;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33872177_33872345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3215,244,0
15    33873657    rs668570    C    T    3422.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3423,253,0
15    33876517    rs2643364    A    G    645.01    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.82;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.147;QD=16.97;ReadPosRankSum=0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:17,21:38:99:675,0,598
15    33876543    rs624954    C    T    1123.31    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=65;Dels=0.0;FS=1.422;HRun=0;HaplotypeScore=0.5784;MQ=58.93;MQ0=0;MQRankSum=0.497;QD=17.28;ReadPosRankSum=0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:28,37:65:99:1153,0,920
15    33893484    rs2437143    C    T    434.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:468,36,0
15    33893769    rs2437135    C    T    2937.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,88:89:99:2970,223,0
15    33893828    rs3829479    C    G    1547.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1580,117,0
15    33905410    rs2229116    A    G    735.14    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.226;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.67;MQ0=0;MQRankSum=-0.368;QD=10.5;ReadPosRankSum=2.274;SNPEFF_AMINO_ACID_CHANGE=I731V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33905384_33905576;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:38,32:70:99:765,0,1192
15    33915805    rs11637033    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
15    33916380    rs2279661    T    C    598.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,20:20:54.15:631,54,0
15    33920662    rs35706688    T    C    3957.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.596;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=59.81;MQ0=0;MQRankSum=-0.199;QD=31.92;ReadPosRankSum=-1.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:1,123:124:99:3958,272,0
15    33920925    rs34022625    TC    T    350.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=4;HaplotypeScore=32.4039;IndelType=D;MQ=62.45;MQ0=0;QD=26.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:2,11:13:33.10:392,33,0
15    33923314    rs1495279    A    G    654.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:688,51,0
15    33923634    rs35022943    A    G    255.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
15    33925364    rs2291732    G    A    1274.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,37:37:96.32:1308,96,0
15    33938396    rs8031151    A    T    416.39    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.701;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.827;QD=24.49;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:3,14:17:80.96:446,0,81
15    33939495    rs2291736    C    T    286.41    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=20.46;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:5,9:14:99:316,0,163
15    33954652    rs4780144    C    T    798.14    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.337;DB;DP=58;Dels=0.0;FS=5.333;HRun=0;HaplotypeScore=1.8332;MQ=59.2;MQ0=0;MQRankSum=-0.153;QD=13.76;ReadPosRankSum=0.378;SNPEFF_AMINO_ACID_CHANGE=R1641C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_33954354_33955149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:26,32:58:99:828,0,692
15    33962440    rs34219516    AT    A    243.58    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=2.887;DB;DP=29;FS=0.0;HRun=10;HaplotypeScore=96.1512;IndelType=D;MQ=59.16;MQ0=0;MQRankSum=0.073;QD=8.4;ReadPosRankSum=-1.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:15,14:29:99:283,0,347
15    33962559    rs11072596    G    C    1332.74    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=104;Dels=0.0;FS=5.016;HRun=0;HaplotypeScore=1.5226;MQ=59.33;MQ0=0;MQRankSum=0.0;QD=12.81;ReadPosRankSum=-1.721;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:54,50:104:99:1363,0,1593
15    33962955    rs55869153    T    G    36.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.231;QD=6.01;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:3,3:6:66.03:66,0,96
15    33990041    rs3736531    A    G    2120.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2154,165,0
15    33990250    rs1111611    G    A    2459.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.67;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2493,190,0
15    33991716    rs1495277    A    G    175.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
15    33992220    rs3817408    T    C    250.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
15    33992272    rs17817536    G    A    118.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:151,12,0
15    33992960    rs7175886    G    C    85.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
15    33993320    rs2280419    G    A    1660.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1694,123,0
15    33993358    rs2280418    G    A    1252.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1286,93,0
15    33993483    rs2280417    A    G    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
15    34014753    rs11635223    T    C    326.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
15    34016274    rs6495228    G    A    1047.88    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.065;DB;DP=80;Dels=0.0;FS=0.88;HRun=0;HaplotypeScore=0.9832;MQ=59.71;MQ0=0;MQRankSum=-0.603;QD=13.1;ReadPosRankSum=0.005;SNPEFF_AMINO_ACID_CHANGE=G2270E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34016266_34016377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:42,38:80:99:1078,0,1160
15    34030865    rs4780171    T    C    671.57    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.441;DB;DP=33;Dels=0.0;FS=9.031;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.516;QD=20.35;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:12,21:33:99:702,0,363
15    34038511    rs3812937    A    G    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
15    34060684    rs4779644    C    G    350.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:383,33,0
15    34060740    rs2278317    C    T    1312.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1345,105,0
15    34064043    rs1429754    T    C    2041.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2074,153,0
15    34103272    rs4780181    C    G    423.79    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.899;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.532;QD=11.45;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:19,18:37:99:454,0,523
15    34109269    rs2288610    G    T    283.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=18.9;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:6,9:15:99:313,0,202
15    34111876    rs10631080    AAAATAAATAAATAAAT    A    846.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=272.1761;IndelType=D;MQ=46.95;MQ0=0;MQRankSum=-0.592;QD=42.33;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:10,10:20:99:886,0,644
15    34112825    rs1036005    C    T    52.56    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.296;QD=5.26;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:7,3:10:82.56:83,0,264
15    34112865    rs1036006    G    A    201.14    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.146;QD=11.83;ReadPosRankSum=-0.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:10,7:17:99:231,0,314
15    34112906    rs1036007    C    A    416.50    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.95;DB;DP=35;Dels=0.0;FS=6.835;HRun=0;HaplotypeScore=1.578;MQ=56.75;MQ0=0;MQRankSum=-0.083;QD=11.9;ReadPosRankSum=-0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:20,15:35:99:446,0,622
15    34113010    rs2288613    C    T    1377.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=58.16;MQ0=0;QD=36.26;SNPEFF_AMINO_ACID_CHANGE=F3599;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34112957_34113013;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1411,105,0
15    34113054    rs3815965    G    A    276.77    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.734;DB;DP=25;Dels=0.0;FS=2.269;HRun=2;HaplotypeScore=0.9159;MQ=56.2;MQ0=0;MQRankSum=-0.299;QD=11.07;ReadPosRankSum=0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:13,12:25:99:307,0,434
15    34113454    rs35254800    AT    A    389.49    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=3.927;DB;DP=42;FS=3.254;HRun=8;HaplotypeScore=129.2098;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=0.515;QD=9.27;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:23,19:42:99:429,0,639
15    34113536    rs2288614    A    G    942.08    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.474;DB;DP=68;Dels=0.0;FS=0.96;HRun=1;HaplotypeScore=2.8233;MQ=59.98;MQ0=0;MQRankSum=-0.209;QD=13.85;ReadPosRankSum=0.31;SNPEFF_AMINO_ACID_CHANGE=A3622;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34113471_34113570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:30,38:68:99:972,0,817
15    34113592    rs2288615    T    G    464.78    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=42;Dels=0.0;FS=1.363;HRun=3;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.038;QD=11.07;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:24,18:42:99:495,0,786
15    34115088    rs8032198    C    T    63.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:4,3:7:93.83:94,0,143
15    34117923    rs141803334    TC    T    32.17    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=3.136;DB;DP=47;FS=19.799;HRun=1;HaplotypeScore=530.3373;IndelType=D;MQ=44.61;MQ0=0;MQRankSum=-3.741;QD=0.68;ReadPosRankSum=-3.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:36,11:47:71.20:71,0,339
15    34117954    rs72715190    A    G    186.54    HaplotypeScoreFilter13    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=29.9936;MQ=43.04;MQ0=0;MQRankSum=-0.811;QD=6.22;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:14,16:30:99:217,0,266
15    34118022    .    C    G    42.19    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.39;MQ0=0;MQRankSum=-0.421;QD=4.69;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:4,5:9:72.19:72,0,128
15    34118994    rs4041449    C    CAG    5002.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;FS=0.0;HRun=0;HaplotypeScore=208.4895;IndelType=I;MQ=60.21;MQ0=0;QD=59.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,83:84:99:5003,253,0
15    34127456    rs6495270    C    G    271.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:304,24,0
15    34129357    rs7182398    C    T    32.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.63;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:5,2:7:62.40:62,0,158
15    34133130    rs3764232    A    G    1034.25    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.69;MQ0=0;MQRankSum=-0.092;QD=13.79;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:40,35:75:99:1064,0,1307
15    34134386    rs2278312    A    G    280.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
15    34135607    rs17817680    A    G    323.77    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.532;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=9.52;ReadPosRankSum=-0.542;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:20,14:34:99:354,0,717
15    34135676    rs117754976    C    G    1347.86    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.417;DB;DP=97;Dels=0.0;FS=2.08;HRun=0;HaplotypeScore=0.8321;MQ=59.73;MQ0=0;MQRankSum=-1.006;QD=13.9;ReadPosRankSum=-0.916;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:43,53:97:99:1378,0,1346
15    34135826    rs2303868    G    A    1468.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1502,117,0
15    34136971    rs7181900    T    C    961.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:995,75,0
15    34137079    rs149087920    TAGA    T    1233.80    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=6.788;DB;DP=84;FS=0.895;HRun=0;HaplotypeScore=323.6833;IndelType=D;MQ=59.23;MQ0=0;MQRankSum=0.678;QD=14.69;ReadPosRankSum=0.08;SNPEFF_AMINO_ACID_CHANGE=LE4434L;SNPEFF_CODON_CHANGE=ttagaa/tta;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_15_34137063_34137263;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:52,32:84:99:1273,0,3091
15    34137200    rs41279228    T    G    1597.29    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=3.92;DB;DP=115;Dels=0.0;FS=1.514;HRun=1;HaplotypeScore=1.9989;MQ=59.64;MQ0=0;MQRankSum=0.709;QD=13.89;ReadPosRankSum=1.0;SNPEFF_AMINO_ACID_CHANGE=R4474;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34137063_34137263;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:61,54:115:99:1627,0,1862
15    34137292    rs12899715    C    G    1031.46    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=72;Dels=0.0;FS=8.14;HRun=0;HaplotypeScore=1.5661;MQ=59.42;MQ0=0;MQRankSum=-1.246;QD=14.33;ReadPosRankSum=-0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1061,0,1039
15    34140735    rs2278314    A    G    889.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:923,69,0
15    34145444    rs721400    T    A    155.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.39;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:3,5:8:99:185,0,101
15    34146886    rs713201    T    C    1136.30    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.319;DB;DP=89;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.1514;MQ=59.27;MQ0=0;MQRankSum=0.957;QD=12.77;ReadPosRankSum=0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:46,42:89:99:1166,0,1570
15    34146922    rs713203    C    T    2236.55    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=145;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=-0.527;QD=15.42;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:70,75:145:99:2267,0,2240
15    34151668    rs7180084    G    C    363.80    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.492;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=-0.113;QD=21.4;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:6,11:17:99:394,0,131
15    34152549    rs4780186    A    G    85.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
15    34152777    rs2303310    T    A    966.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.371;DB;DP=77;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;MQRankSum=0.304;QD=12.56;ReadPosRankSum=-1.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361728    GT:AD:DP:GQ:PL    0/1:44,33:77:99:997,0,1421
15    34156284    rs11072759    C    G    225.10    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.484;DB;DP=23;Dels=0.0;FS=2.793;HRun=1;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=0.355;QD=9.79;ReadPosRankSum=1.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AVEN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306730    GT:AD:DP:GQ:PL    0/1:15,8:23:99:255,0,523
15    34156312    rs11072760    T    C    399.78    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.302;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.07;MQ0=0;MQRankSum=0.793;QD=11.76;ReadPosRankSum=-1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AVEN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306730    GT:AD:DP:GQ:PL    0/1:19,15:34:99:430,0,559
15    34441102    rs6495551    C    T    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256544    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    34446955    rs77111922    C    T    103.71    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.398;QD=9.43;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256544    GT:AD:DP:GQ:PL    0/1:7,4:11:99:134,0,192
15    34517929    rs17236763    T    C    305.92    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.303;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=13.3;ReadPosRankSum=-0.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:10,12:23:99:336,0,328
15    34520863    rs17236784    A    G    503.16    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.465;DB;DP=52;Dels=0.0;FS=3.233;HRun=2;HaplotypeScore=3.5897;MQ=53.94;MQ0=0;MQRankSum=-0.406;QD=9.68;ReadPosRankSum=0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:27,25:52:99:533,0,720
15    34521940    rs8033087    C    A    587.51    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.87;DB;DP=50;Dels=0.0;FS=1.172;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.256;QD=11.75;ReadPosRankSum=0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:29,21:50:99:618,0,889
15    34522108    rs149415459    ACT    A    519.52    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.268;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=67.8088;IndelType=D;MQ=59.39;MQ0=0;MQRankSum=1.608;QD=25.98;ReadPosRankSum=-0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:6,14:20:99:559,0,247
15    34528475    rs17817800    G    A    74.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.42;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,107
15    34529776    rs17817806    A    G    346.09    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=29;Dels=0.0;FS=3.696;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.938;QD=11.93;ReadPosRankSum=0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:14,15:29:99:376,0,429
15    34531474    .    T    TA    187.36    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.097;DP=14;FS=0.0;HRun=1;HaplotypeScore=32.3105;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.097;QD=13.38;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:8,6:14:99:226,0,270
15    34532726    rs60604568    C    T    53.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.869;QD=4.42;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:6,6:12:83:83,0,211
15    34536090    rs59209438    C    T    232.06    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=0.021;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.232;QD=7.49;ReadPosRankSum=1.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:21,10:31:99:262,0,771
15    34536143    rs79436830    G    T    354.34    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=3.725;DB;DP=52;Dels=0.0;FS=2.995;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.03;QD=6.81;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:35,16:52:99:384,0,981
15    34537435    rs4371122    C    T    1075.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    1/1:0,31:31:87.25:1108,87,0
15    34537617    rs74010036    G    A    654.87    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.608;QD=9.77;ReadPosRankSum=0.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:39,28:67:99:685,0,1251
15    34542730    rs61549125    T    C    317.48    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=18.68;ReadPosRankSum=-1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:7,10:17:99:347,0,238
15    34542739    rs56761496    G    C    201.84    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.059;QD=12.61;ReadPosRankSum=-1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:7,9:16:99:232,0,248
15    34542872    rs17236798    C    G    500.08    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.233;DB;DP=32;Dels=0.0;FS=3.192;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.217;QD=15.63;ReadPosRankSum=2.589;SNPEFF_AMINO_ACID_CHANGE=P329;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34542832_34542930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451844    GT:AD:DP:GQ:PL    0/1:15,16:32:99:530,0,369
15    34543298    rs11382535    G    GA    932.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=10;HaplotypeScore=104.6703;IndelType=I;MQ=59.42;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    1/1:10,30:40:93.10:975,93,0
15    34544274    rs2290942    G    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    34544351    rs2290941    C    A    255.06    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.787;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=18.22;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:3,11:14:87.22:285,0,87
15    34544468    rs2290940    C    T    286.38    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DB;DP=19;Dels=0.0;FS=4.359;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-1.266;QD=15.07;ReadPosRankSum=0.122;SNPEFF_AMINO_ACID_CHANGE=S224;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34544371_34544585;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000451844    GT:AD:DP:GQ:PL    0/1:9,10:19:99:316,0,249
15    34546267    rs76027545    A    C    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
15    34546434    rs2705344    T    C    1516.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1549,114,0
15    34546451    rs2615358    G    C    1846.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1880,135,0
15    34547638    rs17817830    A    T    429.22    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.649;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.849;QD=16.51;ReadPosRankSum=-0.746;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    0/1:12,14:26:99:459,0,383
15    34550118    rs2705350    C    T    172.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290209    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
15    34551082    rs7164902    G    A    2059.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34551014_34551145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397702    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2093,157,0
15    34610964    rs347867    G    C    439.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354181    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:472,36,0
15    34628570    rs347836    C    G    1063.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354181    GT:AD:DP:GQ:PL    1/1:0,31:31:84.24:1097,84,0
15    34634033    rs3063    A    G    92.20    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.344;QD=6.59;ReadPosRankSum=-0.071;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    0/1:10,4:14:99:122,0,353
15    34634124    rs1045238    C    G    678.69    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.593;DB;DP=64;Dels=0.0;FS=1.688;HRun=0;HaplotypeScore=0.7887;MQ=56.52;MQ0=0;MQRankSum=0.052;QD=10.6;ReadPosRankSum=-1.904;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    0/1:35,29:64:99:709,0,1048
15    34634138    rs1045204    G    A    721.75    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.524;DB;DP=73;Dels=0.0;FS=1.045;HRun=0;HaplotypeScore=0.0;MQ=56.83;MQ0=0;MQRankSum=-0.615;QD=9.89;ReadPosRankSum=-2.49;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    0/1:37,36:73:99:752,0,1093
15    34634139    rs1045194    T    C    711.65    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.87;MQ0=0;MQRankSum=-1.872;QD=9.62;ReadPosRankSum=-1.927;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    0/1:38,36:74:99:742,0,1014
15    34634324    rs422388    C    G    1277.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=36.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328848    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1310,96,0
15    34635029    rs2615357    G    T    35.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328848    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
15    34635200    rs2169479    C    T    362.27    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.096;DB;DP=42;Dels=0.0;FS=3.493;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=1.031;QD=8.63;ReadPosRankSum=-1.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328848    GT:AD:DP:GQ:PL    0/1:27,15:42:99:392,0,843
15    34635369    rs2169480    A    G    157.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.71;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.452;QD=11.25;ReadPosRankSum=-0.839;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    0/1:8,6:14:99:188,0,245
15    34638030    rs8031961    C    T    66.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.14;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438749    GT:AD:DP:GQ:PL    0/1:3,3:6:96.81:97,0,106
15    34638198    rs12595504    A    G    711.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.12;DB;DP=49;Dels=0.0;FS=1.115;HRun=1;HaplotypeScore=0.9469;MQ=59.53;MQ0=0;MQRankSum=1.164;QD=14.52;ReadPosRankSum=-1.476;SNPEFF_AMINO_ACID_CHANGE=Q21R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34638143_34638236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537011    GT:AD:DP:GQ:PL    0/1:21,28:49:99:742,0,689
15    34638342    rs12592913    G    T    217.01    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.372;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=14.47;ReadPosRankSum=-0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    0/1:8,7:15:99:247,0,293
15    34640218    rs374230    C    T    2073.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.39;SNPEFF_AMINO_ACID_CHANGE=P22L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34640170_34640878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2106,159,0
15    34640378    rs430083    T    C    2872.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5395;MQ=59.7;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=D103;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34640170_34640878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537011    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2906,229,0
15    34640959    rs371061    G    A    713.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:746,54,0
15    34643103    rs347796    A    G    691.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:724,54,0
15    34651752    rs71464862    C    T    133.30    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DB;DP=17;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=7.84;ReadPosRankSum=1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    0/1:11,6:17:99:163,0,340
15    34651983    rs34997758    T    C    33.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.24;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:64,0,32
15    34654339    rs10626628    T    TTCTC    2604.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=309.5388;IndelType=I;MQ=51.35;MQ0=1;QD=42.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    1/1:22,25:60:99:2646,134,0
15    34654718    rs2279686    C    T    340.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.47;QD=24.33;ReadPosRankSum=-1.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333756    GT:AD:DP:GQ:PL    1/1:1,13:14:30.09:374,30,0
15    34655092    rs2339434    T    C    291.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314891    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:325,27,0
15    34657589    rs4984237    A    G    189.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314891    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:222,18,0
15    34673722    rs76522922    C    T    2610.92    MQFilter40    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=3.581;DB;DP=186;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5318;MQ=30.46;MQ0=2;MQRankSum=-2.06;QD=14.04;ReadPosRankSum=-0.379;SNPEFF_AMINO_ACID_CHANGE=V425I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_34671272_34673814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA8A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543376    GT:AD:DP:GQ:PL    0/1:57,128:186:99:2641,0,949
15    34678807    .    G    A    570.84    MQFilter40    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DP=138;Dels=0.0;FS=0.817;HRun=1;HaplotypeScore=0.9469;MQ=26.94;MQ0=26;MQRankSum=0.614;QD=4.14;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359187    GT:AD:DP:GQ:PL    0/1:90,48:138:99:601,0,1677
15    34781941    rs117772948    C    T    80.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=13.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543376    GT:AD:DP:GQ:PL    0/1:2,4:6:68.41:110,0,68
15    34787280    rs4099552    T    G    140.05    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.27;MQ0=0;MQRankSum=-0.736;QD=23.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543376    GT:AD:DP:GQ:PL    0/1:1,5:6:17.20:170,0,17
15    34824908    rs139423478    G    T    132.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.79;MQ0=11;QD=6.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543376    GT:AD:DP:GQ:PL    1/1:7,13:20:18.02:165,18,0
15    35045312    rs651724    T    A    862    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=1.265;DB;DP=77;Dels=0.0;FS=6.706;HRun=0;HaplotypeScore=0.9734;MQ=59.7;MQ0=0;MQRankSum=1.578;QD=11.19;ReadPosRankSum=1.416;SNPEFF_AMINO_ACID_CHANGE=T111;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_35043233_35045573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290374    GT:AD:DP:GQ:PL    0/1:48,29:77:99:892,0,1535
15    35045759    rs73387632    G    T    42.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.68;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GJD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290374    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:73,0,31
15    35083508    rs59431308    TCACA    T    132.36    PASS    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=276.8419;IndelType=D;MQ=54.44;MQ0=0;MQRankSum=1.357;QD=3.58;ReadPosRankSum=2.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290378    GT:AD:DP:GQ:PL    0/1:23,6:37:99:171,0,520
15    35087284    .    A    G    92.44    PASS    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290378    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:125,12,0
15    35149008    rs8035240    C    T    1423    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=P1481;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_35148553_35149307;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543879    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1456,105,0
15    35155405    rs2293126    A    C    71.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
15    35168056    rs2290321    C    T    1284.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1318,99,0
15    35185808    rs59397470    G    GCACGCACA    1408.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=179.9642;IndelType=I;MQ=55.24;MQ0=0;QD=58.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:9,15:24:66.20:1450,66,0
15    35196379    rs12899377    T    A    173.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:207,18,0
15    35196492    rs12898639    C    T    1493.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1526,111,0
15    35196878    rs717941    A    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    35207397    rs2044920    C    G    601.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7356;MQ=54.85;MQ0=0;QD=21.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,24:28:51.12:634,51,0
15    35222318    rs2290320    T    C    502.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:536,39,0
15    35230924    rs12594085    A    G    1802.33    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=0.838;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=55.9324;MQ=51.83;MQ0=0;MQRankSum=0.503;QD=29.07;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1835,121,0
15    35230934    rs10701045    A    ATAGT    5753.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.0;HRun=0;HaplotypeScore=418.5933;IndelType=I;MQ=52.74;MQ0=0;QD=81.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:1,67:71:99:5754,214,0
15    35231184    rs3816447    A    G    83.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
15    35256624    rs9920529    C    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    35261649    rs7164169    A    G    359.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:392,30,0
15    35261952    rs7164070    C    T    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.59;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_35261740_35261956;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156471    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
15    35377036    rs4286068    C    T    109.10    MQFilter40;QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=1.039;DB;DP=144;Dels=0.0;FS=5.805;HRun=0;HaplotypeScore=0.734;MQ=37.8;MQ0=3;MQRankSum=-1.027;QD=0.75;ReadPosRankSum=1.855;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=NANOGP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455486    GT:AD:DP:GQ:PL    0/1:125,19:144:99:139,0,3226
15    35377109    rs146363687    G    T    1787.13    MQFilter40    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.193;DB;DP=157;Dels=0.0;FS=16.701;HRun=0;HaplotypeScore=0.0;MQ=37.64;MQ0=2;MQRankSum=-0.754;QD=11.38;ReadPosRankSum=-1.746;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=NANOGP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455486    GT:AD:DP:GQ:PL    0/1:82,75:157:99:1817,0,2155
15    35377265    rs2004079    T    G    180.38    MQFilter40    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.81;DB;DP=52;Dels=0.0;FS=6.256;HRun=0;HaplotypeScore=0.0;MQ=35.21;MQ0=5;MQRankSum=-4.232;QD=3.47;ReadPosRankSum=0.588;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=NANOGP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455486    GT:AD:DP:GQ:PL    0/1:31,21:52:99:210,0,834
15    35385338    rs12901760    T    C    314.46    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.247;DB;DP=34;Dels=0.0;FS=6.2;HRun=0;HaplotypeScore=0.5784;MQ=56.93;MQ0=0;MQRankSum=0.475;QD=9.25;ReadPosRankSum=-0.285;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,14:34:99:344,0,528
15    35385434    rs12916766    C    T    582.64    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=46;Dels=0.0;FS=4.265;HRun=0;HaplotypeScore=1.8245;MQ=52.3;MQ0=0;MQRankSum=-3.09;QD=12.67;ReadPosRankSum=-1.374;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,24:46:99:613,0,637
15    35834547    rs1020307    T    C    1193.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=38.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATPBD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256538    GT:AD:DP:GQ:PL    1/1:0,31:31:93.28:1227,93,0
15    36871957    rs3743337    C    T    31.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_15_36871812_36872162;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437989    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:61,0,30
15    36936793    rs4923721    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338183    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
15    36937405    rs11073191    G    T    165.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338183    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
15    36946441    rs10220785    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    36949952    rs6495863    T    A    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338183    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
15    36984409    rs3743338    T    C    1035.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338183    GT:AD:DP:GQ:PL    1/1:0,32:32:84.23:1069,84,0
15    36989469    rs2381887    G    A    4030.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.79;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338183    GT:AD:DP:GQ:PL    1/1:0,110:110:99:4031,307,0
15    37026600    rs33956166    A    AT    108.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=11;HaplotypeScore=18.253;IndelType=I;MQ=61.78;MQ0=0;QD=18.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338183    GT:AD:DP:GQ:PL    1/1:1,5:6:15.03:151,15,0
15    37110637    rs1194621    T    C    370.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.7;MQ0=0;QD=30.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC019016.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430593    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:404,33,0
15    37184735    .    AG    A    230.37    PASS    AB=0.926;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DP=63;FS=0.0;HRun=1;HaplotypeScore=421.6644;IndelType=D;MQ=53.85;MQ0=0;MQRankSum=-1.034;QD=3.66;ReadPosRankSum=-2.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEIS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219869    GT:AD:DP:GQ:PL    0/1:58,5:63:99:269,0,534
15    37187197    rs112362371    A    AT    292.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=6;HaplotypeScore=26.0075;IndelType=I;MQ=62.89;MQ0=0;QD=26.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEIS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219869    GT:AD:DP:GQ:PL    1/1:2,9:11:27.09:334,27,0
15    37187299    .    T    G    36.92    QDFilter2    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.245;DP=44;Dels=0.0;FS=5.477;HRun=2;HaplotypeScore=2.7134;MQ=47.12;MQ0=0;MQRankSum=-2.131;QD=0.84;ReadPosRankSum=1.728;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEIS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219869    GT:AD:DP:GQ:PL    0/1:25,19:44:66.91:67,0,685
15    37242440    rs11293336    GA    G    283.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=14;HaplotypeScore=78.0135;IndelType=D;MQ=61.78;MQ0=0;QD=11.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEIS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219869    GT:AD:DP:GQ:PL    1/1:6,18:24:47.43:325,47,0
15    37375938    rs77652060    C    T    695.78    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.975;DB;DP=64;Dels=0.0;FS=2.684;HRun=1;HaplotypeScore=1.8997;MQ=60.0;MQ0=0;MQRankSum=1.277;QD=10.87;ReadPosRankSum=-0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEIS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219869    GT:AD:DP:GQ:PL    0/1:39,24:64:99:726,0,1220
15    38228992    rs17557582    A    G    68.56    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=5.27;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319669    GT:AD:DP:GQ:PL    0/1:7,6:13:98.55:99,0,256
15    38233223    rs1021796    T    C    112.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.421;QD=12.53;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319669    GT:AD:DP:GQ:PL    0/1:4,4:9:99:143,0,141
15    38233869    rs2937991    T    C    1976.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319669    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2010,150,0
15    38234301    rs72723044    T    C    324.58    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.39;MQ0=0;MQRankSum=-1.569;QD=8.54;ReadPosRankSum=-1.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319669    GT:AD:DP:GQ:PL    0/1:25,13:38:99:355,0,895
15    38235521    rs12443282    T    A    756.96    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.311;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=2.336;QD=17.2;ReadPosRankSum=-0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319669    GT:AD:DP:GQ:PL    0/1:20,24:44:99:787,0,576
15    38240024    rs112503245    CAA    C    267.44    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=39.8441;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=22.29;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319669    GT:AD:DP:GQ:PL    0/1:5,7:12:99:306,0,269
15    38243151    rs76176576    G    A    331.34    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.377;QD=18.41;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319669    GT:AD:DP:GQ:PL    0/1:8,10:18:99:361,0,270
15    38614525    rs7182445    G    A    1212.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=105;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.1207;MQ=59.56;MQ0=0;MQRankSum=-0.133;QD=11.55;ReadPosRankSum=1.441;SNPEFF_AMINO_ACID_CHANGE=K97;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_38614442_38614610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    0/1:60,45:105:99:1242,0,1869
15    38617113    rs1879938    C    T    158.94    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=14.45;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    0/1:5,6:11:99:189,0,175
15    38617115    rs1879937    C    G    397.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:430,33,0
15    38631840    rs7163339    T    C    190.09    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.853;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.512;QD=8.64;ReadPosRankSum=-0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    0/1:14,8:22:99:220,0,516
15    38631920    rs7179118    G    A    836.87    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.047;DB;DP=53;Dels=0.0;FS=4.048;HRun=1;HaplotypeScore=0.9997;MQ=59.56;MQ0=0;MQRankSum=0.313;QD=15.79;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    0/1:24,29:53:99:867,0,772
15    38631930    rs7180446    C    A    781.51    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.129;DB;DP=56;Dels=0.0;FS=9.901;HRun=0;HaplotypeScore=0.9997;MQ=59.59;MQ0=0;MQRankSum=-0.243;QD=13.96;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    0/1:25,30:56:99:812,0,729
15    38632148    rs7181472    A    G    415.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:449,36,0
15    38641891    rs10083640    A    G    79.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:109,0,29
15    38643574    rs3751526    T    C    1113.71    PASS    AB=0.322;AC=1;AF=0.50;AN=2;BaseQRankSum=2.344;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.706;QD=18.88;ReadPosRankSum=-0.56;SNPEFF_AMINO_ACID_CHANGE=V348;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_38643215_38649450;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRED1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299084    GT:AD:DP:GQ:PL    0/1:19,40:59:99:1144,0,524
15    38762701    rs7162389    A    G    59.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=5.96;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM98B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305752    GT:AD:DP:GQ:PL    0/1:6,4:10:89.64:90,0,221
15    38790885    rs4467032    T    C    331.73    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=17.46;ReadPosRankSum=-1.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310803    GT:AD:DP:GQ:PL    0/1:8,11:19:99:362,0,271
15    38804020    rs11413668    T    TA    338    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=41.0474;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=0.044;QD=18.78;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310803    GT:AD:DP:GQ:PL    0/1:8,10:18:99:377,0,258
15    38804104    rs6495977    C    A    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.03;MQ0=0;MQRankSum=1.026;QD=9.63;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310803    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:69,0,64
15    38988760    rs7171233    T    A    179.72    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=23;Dels=0.0;FS=2.006;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.346;QD=7.81;ReadPosRankSum=-2.047;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318792    GT:AD:DP:GQ:PL    0/1:14,9:23:99:210,0,408
15    38988815    rs7165988    C    G    694.15    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=41;Dels=0.0;FS=6.463;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.785;QD=16.93;ReadPosRankSum=0.677;SNPEFF_AMINO_ACID_CHANGE=L3V;SNPEFF_CODON_CHANGE=Cta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_38988799_38988940;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318792    GT:AD:DP:GQ:PL    0/1:20,21:41:99:724,0,533
15    38989121    rs71403553    C    A    71.91    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=10.27;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318792    GT:AD:DP:GQ:PL    0/1:2,5:7:66.50:102,0,66
15    38989168    rs35755738    T    C    123.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318792    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
15    39545032    rs156783    T    G    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318578    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
15    40030440    rs1906163    G    A    648.35    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.536;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.97;MQ0=0;MQRankSum=-0.309;QD=13.79;ReadPosRankSum=1.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:22,25:47:99:678,0,692
15    40030457    rs34646792    GA    G    289.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.451;DB;DP=32;FS=0.0;HRun=10;HaplotypeScore=154.9618;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=-0.724;QD=9.06;ReadPosRankSum=1.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:16,16:32:99:329,0,344
15    40031715    rs8033687    C    T    446.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    1/1:0,12:13:36.12:479,36,0
15    40056219    rs34937456    G    A    207.17    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.872;QD=13.81;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:7,8:15:99:237,0,240
15    40056223    rs62004778    T    C    174    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.34;QD=11.6;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:7,8:15:99:204,0,233
15    40058088    rs34185057    A    G    135.91    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=10.45;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:8,5:13:99:166,0,295
15    40062825    rs1565560    C    A    206.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.135;DB;DP=26;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=2.4385;MQ=59.11;MQ0=0;MQRankSum=-0.849;QD=7.96;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:14,12:26:99:237,0,380
15    40062838    rs7179838    G    A    265.15    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.462;QD=10.61;ReadPosRankSum=-0.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:13,12:25:99:295,0,463
15    40062855    rs1565561    C    T    115.71    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;Dels=0.0;FS=3.31;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=7.23;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:9,7:16:99:146,0,282
15    40062884    rs7180846    T    C    65.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=7.27;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350221    GT:AD:DP:GQ:PL    0/1:4,5:9:95.40:95,0,148
15    40226495    rs566792    T    C    107.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.33;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=I33;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40226347_40226540;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,100
15    40247689    rs503830    A    G    127.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
15    40248122    rs8030025    G    A    196.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:230,18,0
15    40254155    rs510949    A    G    1999.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.25;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,61:62:99:2033,156,0
15    40254332    rs509200    T    C    102.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=25.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:135,12,0
15    40257603    rs8035930    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    40265404    rs2307106    T    C    128.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
15    40265799    rs2307105    A    G    2271.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=E556G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40265793_40265950;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2304,175,0
15    40269052    rs34298786    G    A    957.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,29:31:78.25:990,78,0
15    40269102    rs71309403    A    AT    256.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=9;HaplotypeScore=64.4189;IndelType=I;MQ=58.88;MQ0=0;QD=23.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:2,9:11:27.07:299,27,0
15    40270047    rs7173708    A    G    110.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
15    40270214    rs7174071    A    G    1392.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1425,111,0
15    40282625    rs4144472    T    C    1339.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1372,102,0
15    40282701    rs2307104    T    C    176.42    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=19;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.693;QD=9.29;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    0/1:11,8:19:99:206,0,361
15    40284523    rs7178419    C    T    622.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:656,51,0
15    40284802    rs11070241    C    T    164.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
15    40285120    rs11633992    A    G    792.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:826,63,0
15    40293036    rs10567295    AAAT    A    1964.16    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=6.834;DB;DP=82;FS=7.468;HRun=0;HaplotypeScore=323.929;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=-0.328;QD=23.95;ReadPosRankSum=0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    0/1:35,47:82:99:2003,0,2056
15    40300092    rs2279581    T    C    486.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:519,39,0
15    40300214    rs2279580    G    C    915.14    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=1.937;DB;DP=99;Dels=0.0;FS=8.117;HRun=0;HaplotypeScore=1.8519;MQ=58.92;MQ0=0;MQRankSum=0.429;QD=9.24;ReadPosRankSum=-0.944;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    0/1:65,34:99:99:945,0,1989
15    40300443    rs2279579    T    G    1996.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.956;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.6;MQ0=0;MQRankSum=1.434;QD=34.43;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:1,57:58:99:2030,119,0
15    40313083    rs12916520    G    T    1785.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1819,138,0
15    40313141    rs3207297    C    T    840.07    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.021;DB;DP=55;Dels=0.0;FS=2.268;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.447;QD=15.27;ReadPosRankSum=-0.851;SNPEFF_AMINO_ACID_CHANGE=G1377;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40313100_40313228;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382727    GT:AD:DP:GQ:PL    0/1:29,26:55:99:870,0,898
15    40314526    rs3816899    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
15    40314967    rs8030856    C    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
15    40322552    rs2250402    G    T    619.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:652,51,0
15    40324837    rs2291621    C    T    372.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=37.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267884    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:405,30,0
15    40328575    rs7535    G    C    1454.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=53.98;MQ0=0;QD=35.47;SNPEFF_AMINO_ACID_CHANGE=P124A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40327891_40328701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267884    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1487,117,0
15    40328665    rs8208    G    A    2860.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.48;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=L94;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40327891_40328701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267884    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2894,214,0
15    40328973    rs2291620    A    G    128.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
15    40329033    rs2291619    A    G    72.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:105,9,0
15    40330564    rs7321    C    T    1825.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=K43;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40330483_40330595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267884    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1859,153,0
15    40330629    rs8041057    C    T    1240.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,32:32:93.30:1274,93,0
15    40330693    rs937215    C    T    346.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2AK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263791    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:379,30,0
15    40397936    rs539846    G    T    589.76    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.977;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.381;QD=11.8;ReadPosRankSum=1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220446    GT:AD:DP:GQ:PL    0/1:28,22:50:99:620,0,874
15    40453307    rs2277559    A    G    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_40453227_40453456;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287598    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
15    40457129    rs3214012    A    C    152.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=15.24;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287598    GT:AD:DP:GQ:PL    0/1:5,5:10:99:182,0,172
15    40457431    rs17668261    A    C    451.42    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.274;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8519;MQ=60.0;MQ0=0;MQRankSum=0.41;QD=11.29;ReadPosRankSum=0.821;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287598    GT:AD:DP:GQ:PL    0/1:23,17:40:99:481,0,697
15    40462780    rs1801389    G    A    265.41    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.103;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.358;QD=6.32;ReadPosRankSum=-1.648;SNPEFF_AMINO_ACID_CHANGE=K108;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40462738_40462882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412359    GT:AD:DP:GQ:PL    0/1:29,13:42:99:295,0,974
15    40477831    rs1801376    G    A    738.55    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.598;DB;DP=56;Dels=0.0;FS=12.119;HRun=1;HaplotypeScore=1.7128;MQ=59.59;MQ0=0;MQRankSum=-0.362;QD=13.19;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=R295Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40477752_40477843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442874    GT:AD:DP:GQ:PL    0/1:30,26:56:99:769,0,979
15    40494952    rs2412482    A    T    533.32    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.686;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=59.03;MQ0=0;MQRankSum=1.391;QD=12.4;ReadPosRankSum=-0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287598    GT:AD:DP:GQ:PL    0/1:25,18:43:99:563,0,805
15    40505429    rs34358001    T    C    36.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.14;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287598    GT:AD:DP:GQ:PL    0/1:4,2:6:66.82:67,0,144
15    40510056    rs1494533    T    C    166.98    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.747;QD=20.87;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BUB1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287598    GT:AD:DP:GQ:PL    0/1:1,7:8:20.17:197,0,20
15    40544493    rs55799438    A    G    42.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.55;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=I160T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40542868_40544740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319503    GT:AD:DP:GQ:PL    0/1:2,3:5:67.28:73,0,67
15    40544520    rs55974545    G    C    73.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.68;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=P151R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40542868_40544740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319503    GT:AD:DP:GQ:PL    0/1:2,3:5:57.88:103,0,58
15    40556713    rs12902461    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260404    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
15    40557268    rs936216    C    A    301.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=27.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260404    GT:AD:DP:GQ:PL    1/1:0,10:11:27.08:334,27,0
15    40558744    rs748556    G    A    154.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=30.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260404    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
15    40565055    rs2253603    G    A    1497.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.49;MQ0=0;MQRankSum=1.501;QD=33.27;ReadPosRankSum=-1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260404    GT:AD:DP:GQ:PL    1/1:1,44:45:88.84:1530,89,0
15    40582159    .    AGAGAGAGAGAGTGT    A    860.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DP=20;FS=0.0;HRun=0;HaplotypeScore=305.3067;IndelType=D;MQ=45.42;MQ0=0;MQRankSum=1.55;QD=43.04;ReadPosRankSum=0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    0/1:8,12:20:99:900,0,130
15    40582647    rs936210    G    T    938.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:0,28:28:81.20:972,81,0
15    40583093    rs2412506    A    G    61.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=12.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:94,9,0
15    40583107    rs117658605    T    G    149.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.399;MQ=53.03;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:183,18,0
15    40583458    rs936209    A    G    244.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
15    40583876    rs9972418    T    G    306.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:339,27,0
15    40584164    rs2290550    C    A    607.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:1,18:20:51.15:641,51,0
15    40589218    rs2305650    C    G    490.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543785    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:523,39,0
15    40589830    rs2305649    G    A    867.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=30.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543785    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:900,69,0
15    40590134    rs2229690    G    A    1756.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.6;MQ0=0;QD=30.81;SNPEFF_AMINO_ACID_CHANGE=S394;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40590078_40590160;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1789,135,0
15    40590265    rs2305648    C    G    201.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543785    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:235,18,0
15    40595414    rs1869902    G    C    974.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1008,78,0
15    40595627    rs1869901    G    A    544.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260402    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:578,42,0
15    40655845    rs1898883    C    G    1815.53    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.722;DB;DP=142;Dels=0.0;FS=2.124;HRun=1;HaplotypeScore=4.33;MQ=59.18;MQ0=0;MQRankSum=1.11;QD=12.79;ReadPosRankSum=0.098;SNPEFF_AMINO_ACID_CHANGE=P47A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40655826_40656155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267889    GT:AD:DP:GQ:PL    0/1:73,69:142:99:1846,0,2047
15    40655873    rs1898882    G    C    1619.65    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.817;DB;DP=122;Dels=0.0;FS=2.463;HRun=1;HaplotypeScore=0.734;MQ=59.05;MQ0=0;MQRankSum=0.906;QD=13.28;ReadPosRankSum=-0.315;SNPEFF_AMINO_ACID_CHANGE=C56S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40655826_40656155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267889    GT:AD:DP:GQ:PL    0/1:58,63:122:99:1650,0,1613
15    40660515    rs35565646    G    A    184.21    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=19;Dels=0.0;FS=1.952;HRun=0;HaplotypeScore=0.5784;MQ=57.53;MQ0=0;MQRankSum=0.537;QD=9.7;ReadPosRankSum=-0.95;SNPEFF_AMINO_ACID_CHANGE=P734;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40659259_40663257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DISP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267889    GT:AD:DP:GQ:PL    0/1:11,8:19:99:214,0,313
15    40683780    rs2289332    G    A    660.20    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.253;QD=13.2;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249776    GT:AD:DP:GQ:PL    0/1:27,23:50:99:690,0,876
15    40699940    rs2289331    T    C    845.08    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.938;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.35;MQ0=0;MQRankSum=-0.762;QD=13.63;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249760    GT:AD:DP:GQ:PL    0/1:27,35:62:99:875,0,842
15    40700006    rs3214685    G    GTT    845.80    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=4.604;DB;DP=39;FS=1.289;HRun=2;HaplotypeScore=181.0871;IndelType=I;MQ=56.02;MQ0=0;MQRankSum=-0.714;QD=21.69;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249760    GT:AD:DP:GQ:PL    0/1:22,16:39:99:885,0,705
15    40700022    rs10518693    C    T    386.42    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.063;DB;DP=36;Dels=0.0;FS=2.958;HRun=0;HaplotypeScore=1.9667;MQ=57.03;MQ0=0;MQRankSum=-0.634;QD=10.73;ReadPosRankSum=-1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249760    GT:AD:DP:GQ:PL    0/1:19,17:36:99:416,0,659
15    40703211    rs9635324    A    G    30.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.68;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249760    GT:AD:DP:GQ:PL    0/1:2,2:4:60.71:61,0,71
15    40703339    rs8034416    C    T    937.01    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.527;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.551;QD=15.36;ReadPosRankSum=-1.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249760    GT:AD:DP:GQ:PL    0/1:31,30:61:99:967,0,1112
15    40703609    rs4924466    A    G    413.26    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.071;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=-0.471;QD=10.33;ReadPosRankSum=-1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490194    GT:AD:DP:GQ:PL    0/1:23,16:40:99:443,0,777
15    40705159    rs2289329    T    C    488.65    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=23;Dels=0.0;FS=18.468;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=21.25;ReadPosRankSum=-0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490194    GT:AD:DP:GQ:PL    0/1:9,14:23:99:519,0,267
15    40708422    rs11070270    A    G    120.28    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.77;MQ0=0;MQRankSum=-0.66;QD=5.23;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484250    GT:AD:DP:GQ:PL    0/1:12,11:23:99:150,0,179
15    40758337    rs3743145    A    C    733.42    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.915;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.759;QD=13.84;ReadPosRankSum=-0.234;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306243    GT:AD:DP:GQ:PL    0/1:24,29:53:99:763,0,758
15    40849680    rs8029384    C    G    489.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358005    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:522,39,0
15    40855210    rs10152546    T    A    4644.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4003;MQ=59.51;MQ0=0;QD=35.45;SNPEFF_AMINO_ACID_CHANGE=K11I;SNPEFF_CODON_CHANGE=aAa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40854971_40855226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416810    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4644,352,0
15    40856989    rs3803354    C    T    1382.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf57;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000358005    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1416,105,0
15    40862064    rs1058734    C    T    406.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_AMINO_ACID_CHANGE=A155;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40861853_40862142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417769    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:440,33,0
15    40898643    rs7177192    G    C    1998.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=R43T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40898591_40898650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260369    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2032,147,0
15    40907698    rs11427985    T    TG    362.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=32.7941;IndelType=I;MQ=55.21;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260369    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:405,27,0
15    40913840    rs2412541    G    T    2363.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5584;MQ=59.27;MQ0=0;QD=37.51;SNPEFF_AMINO_ACID_CHANGE=A460S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40912838_40917664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260369    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2396,178,0
15    40915190    rs8040502    A    G    1908.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=R910G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40912838_40917664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260369    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1941,144,0
15    40916237    rs17747633    A    G    1404.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;QD=27.0;SNPEFF_AMINO_ACID_CHANGE=K1259E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_40912838_40917664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260369    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1437,123,0
15    40920144    rs6492957    C    T    411.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260369    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:444,33,0
15    40937727    rs6492959    C    T    411.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346991    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:444,33,0
15    40939448    rs8041095    G    A    80.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.19;MQ0=0;QD=26.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534204    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
15    40942715    rs34904135    G    GT    94.11    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=0.326;DB;DP=26;FS=3.981;HRun=14;HaplotypeScore=125.1464;IndelType=I;MQ=54.68;MQ0=0;MQRankSum=-0.471;QD=3.62;ReadPosRankSum=-0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528967    GT:AD:DP:GQ:PL    0/1:17,7:26:99:133,0,181
15    41068771    rs79709714    T    G    121.22    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.944;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.571;QD=3.03;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=E117A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41068740_41068825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000220496    GT:AD:DP:GQ:PL    0/1:20,18:40:99:151,0,542
15    41146581    rs3736287    T    C    489.71    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.682;DB;DP=43;Dels=0.0;FS=7.314;HRun=3;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.509;QD=11.13;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344051    GT:AD:DP:GQ:PL    0/1:21,22:43:99:520,0,687
15    41146880    rs8028552    T    C    696.58    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.406;DB;DP=63;Dels=0.0;FS=6.836;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=1.055;QD=11.06;ReadPosRankSum=-0.49;SNPEFF_AMINO_ACID_CHANGE=S353;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41146837_41146887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536281    GT:AD:DP:GQ:PL    0/1:34,29:63:99:727,0,1101
15    41148199    rs659232    C    T    1490.75    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=4.772;DB;DP=101;Dels=0.0;FS=3.89;HRun=0;HaplotypeScore=2.8119;MQ=59.77;MQ0=0;MQRankSum=0.939;QD=14.76;ReadPosRankSum=-1.084;SNPEFF_AMINO_ACID_CHANGE=Y392;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41148090_41148260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536281    GT:AD:DP:GQ:PL    0/1:47,54:101:99:1521,0,1258
15    41149161    rs690458    G    C    1281.84    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=0.77;DB;DP=107;Dels=0.0;FS=2.869;HRun=1;HaplotypeScore=0.8321;MQ=58.96;MQ0=0;MQRankSum=-1.206;QD=11.98;ReadPosRankSum=0.049;SNPEFF_AMINO_ACID_CHANGE=T493;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41148968_41149369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536281    GT:AD:DP:GQ:PL    0/1:54,53:107:99:1312,0,1568
15    41165739    rs1814692    A    C    801.47    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.12;DB;DP=57;Dels=0.0;FS=1.105;HRun=1;HaplotypeScore=1.9468;MQ=58.77;MQ0=0;MQRankSum=0.279;QD=14.06;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220507    GT:AD:DP:GQ:PL    0/1:28,29:57:99:831,0,890
15    41193274    rs9806730    T    C    174.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220509    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:208,18,0
15    41193316    rs9806683    C    T    183.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220509    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:216,18,0
15    41224124    rs3212278    G    A    33.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.53;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249749    GT:AD:DP:GQ:PL    0/1:4,2:6:63.18:63,0,151
15    41224280    rs3212279    G    T    111.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.92;ReadPosRankSum=2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249749    GT:AD:DP:GQ:PL    0/1:4,4:8:99:141,0,133
15    41245676    rs11557249    G    A    164.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=16.45;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=E7;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41245636_41246012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444189    GT:AD:DP:GQ:PL    0/1:4,6:10:99:195,0,112
15    41247383    rs2412576    G    A    213.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444189    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
15    41272340    rs66470529    CG    C    188.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=20;FS=0.0;HRun=4;HaplotypeScore=58.9561;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=-0.424;QD=9.45;ReadPosRankSum=-0.579;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263793    GT:AD:DP:GQ:PL    0/1:12,8:20:99:228,0,444
15    41275014    rs7173954    T    G    484.84    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.401;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=59.5;MQ0=0;MQRankSum=-0.92;QD=10.54;ReadPosRankSum=1.075;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263793    GT:AD:DP:GQ:PL    0/1:26,20:46:99:515,0,735
15    41276158    rs11855248    G    A    387.02    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.092;DB;DP=40;Dels=0.0;FS=1.329;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.587;QD=9.68;ReadPosRankSum=1.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263793    GT:AD:DP:GQ:PL    0/1:23,17:40:99:417,0,691
15    41279519    rs2305656    T    A    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263793    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
15    41313064    rs3214068    C    G    375.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.744;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.513;QD=14.43;ReadPosRankSum=-0.923;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361937    GT:AD:DP:GQ:PL    0/1:13,13:26:99:405,0,426
15    41339481    rs11070320    C    T    100.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361937    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:133,12,0
15    41346092    rs2899010    T    C    666.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=39.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361937    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:700,51,0
15    41347658    rs2306083    G    A    132.12    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.68;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361937    GT:AD:DP:GQ:PL    0/1:4,5:9:99:162,0,140
15    41371788    .    AC    A    219.15    PASS    AB=0.885;AC=1;AF=0.50;AN=2;BaseQRankSum=4.581;DP=69;FS=0.0;HRun=1;HaplotypeScore=556.0253;IndelType=D;MQ=52.54;MQ0=0;MQRankSum=-0.899;QD=3.18;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361937    GT:AD:DP:GQ:PL    0/1:60,9:69:99:258,0,625
15    41455804    rs28551767    A    T    293.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.701;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.6;MQ0=0;MQRankSum=1.172;QD=14.65;ReadPosRankSum=2.154;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM92A1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528023    GT:AD:DP:GQ:PL    0/1:10,10:20:99:323,0,251
15    41456066    rs138110289    CAGTT    C    3626.75    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=9.433;DB;DP=156;FS=8.53;HRun=0;HaplotypeScore=725.8514;IndelType=D;MQ=58.02;MQ0=0;MQRankSum=3.24;QD=22.95;ReadPosRankSum=0.262;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM92A1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528023    GT:AD:DP:GQ:PL    0/1:85,73:156:99:3627,0,6217
15    41456701    rs2947490    T    G    329.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM92A1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528023    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:362,27,0
15    41476101    rs521088    T    C    1175.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=37.92;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314992    GT:AD:DP:GQ:PL    1/1:0,31:31:87.29:1209,87,0
15    41476209    rs522063    T    C    2339.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=35.99;SNPEFF_AMINO_ACID_CHANGE=T489A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41474926_41476791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314992    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2372,181,0
15    41476875    rs2467297    T    C    73.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=9.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314992    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:106,9,0
15    41483631    rs75754919    T    TA    1082.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=1;HaplotypeScore=165.8776;IndelType=I;MQ=58.38;MQ0=0;QD=41.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314992    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1125,75,0
15    41483636    rs2412609    C    T    871.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314992    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:905,69,0
15    41679685    rs12900702    G    C    882.11    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=1.612;DB;DP=92;Dels=0.0;FS=0.839;HRun=1;HaplotypeScore=0.0;MQ=58.53;MQ0=0;MQRankSum=0.247;QD=9.59;ReadPosRankSum=0.156;SNPEFF_AMINO_ACID_CHANGE=A314G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41679547_41679791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260361    GT:AD:DP:GQ:PL    0/1:55,37:92:99:912,0,1606
15    41766966    rs167581    G    A    1049.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=37.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389629    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1082,81,0
15    41770639    .    C    T    45.51    HaplotypeScoreFilter13;QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.451;DP=90;Dels=0.01;FS=0.0;HRun=12;HaplotypeScore=46.5853;MQ=48.86;MQ0=0;MQRankSum=-3.868;QD=0.5;ReadPosRankSum=2.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473214    GT:AD:DP:GQ:PL    0/1:75,14:90:75.50:76,0,1477
15    41797573    rs35233496    T    TG    314.63    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.979;DB;DP=18;FS=15.911;HRun=7;HaplotypeScore=51.2074;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.457;QD=17.48;ReadPosRankSum=-0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260386    GT:AD:DP:GQ:PL    0/1:7,11:18:70.79:354,0,71
15    41809530    rs11070333    T    C    301.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263800    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:335,24,0
15    41810439    rs932959    G    C    335.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=25.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:369,30,0
15    41813279    rs3743031    C    T    1334.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=R1035;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41812589_41813345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1367,102,0
15    41815516    rs8027526    G    C    736.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=29.44;SNPEFF_AMINO_ACID_CHANGE=Q825E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41815443_41815552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    1/1:0,25:25:57.16:769,57,0
15    41815649    rs2297377    A    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
15    41817367    rs2274858    A    G    273.47    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=18;Dels=0.0;FS=2.527;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.311;QD=15.19;ReadPosRankSum=1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:8,10:18:99:303,0,275
15    41818917    rs1473781    G    A    344.47    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=16.4;ReadPosRankSum=-0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:9,12:21:99:374,0,304
15    41819283    rs2297379    G    A    629.42    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.136;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.381;QD=17.98;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:16,19:35:99:659,0,412
15    41819322    rs2297380    C    T    540.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.607;DB;DP=30;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.966;QD=18.02;ReadPosRankSum=-0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:12,18:30:99:571,0,357
15    41819367    rs11630901    T    C    507.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=40;Dels=0.0;FS=2.614;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=12.68;ReadPosRankSum=0.771;SNPEFF_AMINO_ACID_CHANGE=R582G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41819365_41819499;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:20,20:40:99:537,0,628
15    41819716    rs1200345    C    T    467.06    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.891;DB;DP=35;Dels=0.0;FS=1.666;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.613;QD=13.34;ReadPosRankSum=0.182;SNPEFF_AMINO_ACID_CHANGE=E506K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41819621_41819803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:19,16:35:99:497,0,507
15    41819998    rs11070334    G    A    251.43    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.333;QD=17.96;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:5,9:14:99:281,0,135
15    41822323    rs11632399    C    T    61.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.79;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:6,3:9:91.13:91,0,210
15    41827243    rs7181115    A    G    129.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
15    41827655    rs2297381    C    T    723.20    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.06;DB;DP=66;Dels=0.0;FS=1.028;HRun=1;HaplotypeScore=0.734;MQ=59.65;MQ0=0;MQRankSum=0.987;QD=10.96;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:37,28:66:99:753,0,1137
15    41828571    rs2297383    A    T    297.83    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=14;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.546;QD=21.27;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:5,9:14:99:328,0,123
15    41829230    rs721772    A    G    997.41    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.194;DB;DP=76;Dels=0.0;FS=9.658;HRun=0;HaplotypeScore=3.8392;MQ=59.7;MQ0=0;MQRankSum=-2.295;QD=13.12;ReadPosRankSum=0.325;SNPEFF_AMINO_ACID_CHANGE=L32;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41829143_41829399;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304330    GT:AD:DP:GQ:PL    0/1:40,36:76:99:1027,0,1177
15    41854518    rs1200338    G    A    37.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263798    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
15    41856543    rs11070339    A    G    421.41    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.228;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.05;MQ0=0;MQRankSum=1.039;QD=17.56;ReadPosRankSum=-0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263798    GT:AD:DP:GQ:PL    0/1:9,14:24:99:451,0,295
15    41857216    rs11639399    G    A    1506.52    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=3.695;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5483;MQ=59.14;MQ0=0;MQRankSum=0.014;QD=17.52;ReadPosRankSum=-0.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263798    GT:AD:DP:GQ:PL    0/1:35,51:86:99:1537,0,896
15    41857303    rs2277536    T    C    626.27    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.91;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9327;MQ=56.39;MQ0=0;MQRankSum=2.285;QD=6.66;ReadPosRankSum=-0.502;SNPEFF_AMINO_ACID_CHANGE=A181;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41857224_41857339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540218    GT:AD:DP:GQ:PL    0/1:64,30:94:99:656,0,2084
15    41859499    rs17676332    C    T    405.24    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=15.59;ReadPosRankSum=2.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263798    GT:AD:DP:GQ:PL    0/1:12,14:26:99:435,0,393
15    41859974    rs4924552    C    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263798    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
15    41860411    rs7171675    G    A    734.68    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=-0.77;QD=15.97;ReadPosRankSum=-1.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263798    GT:AD:DP:GQ:PL    0/1:19,26:46:99:765,0,563
15    41860490    rs12148316    T    A    734.86    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.609;DB;DP=61;Dels=0.0;FS=11.697;HRun=1;HaplotypeScore=0.9997;MQ=57.99;MQ0=0;MQRankSum=2.675;QD=12.05;ReadPosRankSum=-0.773;SNPEFF_AMINO_ACID_CHANGE=I278N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41860415_41860560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540218    GT:AD:DP:GQ:PL    0/1:34,27:61:99:765,0,977
15    41860698    rs2289743    C    G    217.26    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.58;QD=21.73;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263798    GT:AD:DP:GQ:PL    0/1:3,7:10:75.25:247,0,75
15    41863181    rs8024626    G    A    649.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.185;DB;DP=44;Dels=0.0;FS=2.169;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.303;QD=14.77;ReadPosRankSum=-0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYRO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263798    GT:AD:DP:GQ:PL    0/1:22,22:44:99:680,0,712
15    41991300    .    A    G    889.26    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.404;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.19;QD=14.82;ReadPosRankSum=-0.463;SNPEFF_AMINO_ACID_CHANGE=I711V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41991262_41991357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    0/1:29,31:60:99:919,0,843
15    41991315    rs2178004    A    T    2023.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_AMINO_ACID_CHANGE=T716S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_41991262_41991357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2057,153,0
15    42019338    .    G    C    1063.10    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=1.204;DP=86;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4105;MQ=59.73;MQ0=0;MQRankSum=-0.323;QD=12.36;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    0/1:49,37:86:99:1093,0,1443
15    42019344    .    A    G    974.91    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.94;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2624;MQ=59.75;MQ0=0;MQRankSum=2.066;QD=10.48;ReadPosRankSum=0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    0/1:52,41:93:99:1005,0,1535
15    42026764    rs1918314    C    T    2930.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=58.86;MQ0=0;QD=31.18;SNPEFF_AMINO_ACID_CHANGE=D1296;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42026720_42026792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    1/1:0,93:94:99:2963,223,0
15    42028354    rs2577960    C    A    343.25    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.742;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.14;MQ0=0;MQRankSum=-1.917;QD=12.71;ReadPosRankSum=0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    0/1:14,13:27:99:373,0,466
15    42032383    rs17677991    C    G    1152.24    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.45;DB;DP=92;Dels=0.0;FS=5.682;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.174;QD=12.52;ReadPosRankSum=0.036;SNPEFF_AMINO_ACID_CHANGE=P1523A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42032251_42032401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    0/1:50,42:92:99:1182,0,1557
15    42041712    rs2695163    G    A    3332.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=59.38;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=K1760;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42041309_42042813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545763    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3333,256,0
15    42046568    rs2695164    A    G    370.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:403,30,0
15    42059521    rs2605570    A    T    2410.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.44;MQ0=0;QD=32.58;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219905    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2444,186,0
15    42091858    rs78480115    G    A    34.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.95;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221214    GT:AD:DP:GQ:PL    0/1:3,2:5:64.76:65,0,94
15    42105918    rs1201689    C    G    1010.01    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.744;DB;DP=99;Dels=0.0;FS=1.689;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=2.213;QD=10.2;ReadPosRankSum=0.47;SNPEFF_AMINO_ACID_CHANGE=L195V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42105819_42105979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260357    GT:AD:DP:GQ:PL    0/1:60,39:99:99:1040,0,1840
15    42109223    rs1197689    T    C    1988.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=58.28;MQ0=0;QD=29.25;SNPEFF_AMINO_ACID_CHANGE=V406;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42109108_42109233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260357    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2022,153,0
15    42109975    rs2303518    T    G    30.71    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.39;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502292    GT:AD:DP:GQ:PL    0/1:5,2:7:60.70:61,0,188
15    42111298    rs890498    C    G    119.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.041;QD=8.0;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502292    GT:AD:DP:GQ:PL    0/1:10,5:15:99:150,0,355
15    42111753    rs58865566    G    GC    699.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.542;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=110.5188;IndelType=I;MQ=57.48;MQ0=0;MQRankSum=2.113;QD=24.1;ReadPosRankSum=1.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502292    GT:AD:DP:GQ:PL    1/1:7,21:29:10.42:740,10,0
15    42114414    rs2303517    C    T    1297.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=37.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221214    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1330,102,0
15    42115019    rs34055060    C    T    486.72    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.436;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.384;QD=11.32;ReadPosRankSum=0.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502695    GT:AD:DP:GQ:PL    0/1:25,18:43:99:517,0,883
15    42115426    rs1197688    A    G    469.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502695    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:502,39,0
15    42115747    rs3959569    G    C    608.93    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=3.035;DB;DP=43;Dels=0.0;FS=1.256;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.574;QD=14.16;ReadPosRankSum=1.096;SNPEFF_AMINO_ACID_CHANGE=R1073P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42115645_42116259;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPKBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260357    GT:AD:DP:GQ:PL    0/1:23,20:43:99:639,0,639
15    42126779    rs28432037    G    A    234.68    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=26.08;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    0/1:2,7:9:39.52:265,0,40
15    42127734    rs2241522    A    G    340.13    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.852;DB;DP=35;Dels=0.0;FS=1.377;HRun=1;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=-2.082;QD=9.72;ReadPosRankSum=1.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    0/1:20,15:35:99:370,0,621
15    42128229    rs1197702    C    T    111.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.54;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    0/1:2,4:6:64.95:141,0,65
15    42128568    rs2303516    C    G    267.88    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=18;Dels=0.0;FS=1.952;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=14.88;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    0/1:8,10:18:99:298,0,275
15    42128855    rs7166139    T    C    71.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431823    GT:AD:DP:GQ:PL    0/1:2,3:5:68.83:101,0,69
15    42129158    rs890505    G    A    423.87    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.236;DB;DP=44;Dels=0.0;FS=16.105;HRun=0;HaplotypeScore=2.4703;MQ=59.48;MQ0=0;MQRankSum=-0.981;QD=9.63;ReadPosRankSum=0.335;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431823    GT:AD:DP:GQ:PL    0/1:26,17:44:99:454,0,756
15    42129176    rs890504    T    C    412.87    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=2.625;DB;DP=43;Dels=0.0;FS=10.688;HRun=1;HaplotypeScore=3.5633;MQ=59.46;MQ0=0;MQRankSum=1.155;QD=9.6;ReadPosRankSum=0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431823    GT:AD:DP:GQ:PL    0/1:28,15:43:99:443,0,938
15    42129373    rs11547012    C    G    302.62    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=2.021;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5757;MQ=59.56;MQ0=0;MQRankSum=1.156;QD=5.71;ReadPosRankSum=-1.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    0/1:39,14:53:99:333,0,1051
15    42132896    rs1122884    C    T    686.11    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=67;Dels=0.0;FS=2.471;HRun=1;HaplotypeScore=0.734;MQ=58.47;MQ0=0;MQRankSum=-1.018;QD=10.24;ReadPosRankSum=-1.524;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    0/1:34,33:67:99:716,0,728
15    42133502    rs11635415    T    C    236.27    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.356;DB;DP=26;Dels=0.0;FS=2.114;HRun=1;HaplotypeScore=2.8069;MQ=55.4;MQ0=0;MQRankSum=0.416;QD=9.09;ReadPosRankSum=1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    0/1:15,11:26:99:266,0,475
15    42133885    rs1648837    T    C    171.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    1/1:0,9:9:21:204,21,0
15    42133886    rs1648836    G    A    197.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    1/1:0,9:9:23.99:231,24,0
15    42134301    rs1648835    A    C    856.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335032    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:890,69,0
15    42134371    rs1648834    G    C    1273.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1307,102,0
15    42134523    rs1648833    C    T    706.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:740,57,0
15    42134652    rs1672464    G    A    278.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.89;MQ0=0;QD=30.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:312,27,0
15    42134839    rs1672465    T    C    229.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:263,24,0
15    42134930    rs1648832    G    T    158.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
15    42135988    rs1672466    C    T    560.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=D286;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42135874_42136009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458483    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:594,45,0
15    42136199    rs1648830    A    G    80.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=26.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:113,9,0
15    42137282    rs1648829    G    A    242.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
15    42137576    rs1648828    C    T    458.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.83;MQ=58.45;MQ0=0;QD=30.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:492,36,0
15    42137581    rs1648827    A    C    430.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.33;MQ0=0;QD=30.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476036    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:463,33,0
15    42137773    rs4924580    G    A    53.27    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=11;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=4.84;ReadPosRankSum=-1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461382    GT:AD:DP:GQ:PL    0/1:7,4:11:83.27:83,0,164
15    42138321    rs1197670    A    G    930.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461382    GT:AD:DP:GQ:PL    1/1:0,31:31:87.15:963,87,0
15    42138456    rs1197669    G    A    1405.52    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.554;DB;DP=103;Dels=0.0;FS=4.921;HRun=1;HaplotypeScore=0.734;MQ=59.55;MQ0=0;MQRankSum=-0.077;QD=13.65;ReadPosRankSum=0.184;SNPEFF_AMINO_ACID_CHANGE=R552;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42138401_42138580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458483    GT:AD:DP:GQ:PL    0/1:53,50:103:99:1436,0,1597
15    42139038    rs890508    G    A    1834.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461382    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1867,141,0
15    42143118    rs78489122    T    C    62.51    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=10.561;HRun=1;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=0.597;QD=5.21;ReadPosRankSum=1.034;SNPEFF_AMINO_ACID_CHANGE=I3619V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42143052_42143137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:7,4:11:92.50:93,0,219
15    42143145    rs113487115    C    CCA    530.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=40.6317;IndelType=I;MQ=58.88;MQ0=0;QD=48.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342159    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:572,33,0
15    42143533    rs1197665    T    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_AMINO_ACID_CHANGE=N3564T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42143481_42143567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    42143811    rs1212818    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342159    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
15    42144332    rs1197662    T    C    599.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342159    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:633,48,0
15    42144979    rs1197661    C    G    314.88    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.028;DB;DP=83;Dels=0.0;FS=3.822;HRun=11;HaplotypeScore=0.0;MQ=54.86;MQ0=0;MQRankSum=-0.479;QD=3.79;ReadPosRankSum=-0.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD7-PLA2G4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342159    GT:AD:DP:GQ:PL    0/1:48,35:83:99:345,0,1416
15    42145936    rs1197660    G    C    400.48    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=24;Dels=0.0;FS=3.821;HRun=2;HaplotypeScore=3.3043;MQ=57.44;MQ0=0;MQRankSum=0.381;QD=16.69;ReadPosRankSum=-0.732;SNPEFF_AMINO_ACID_CHANGE=A3275G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42145780_42145985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:10,14:24:99:430,0,288
15    42147206    rs1648826    T    C    1696.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=29.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1729,138,0
15    42147639    rs2305655    A    C    252.57    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.924;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.026;QD=9.02;ReadPosRankSum=-0.343;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:17,11:28:99:283,0,438
15    42147663    rs1672467    G    C    641.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:675,51,0
15    42148550    rs28495273    T    C    283    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.151;QD=16.65;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:6,11:17:99:313,0,166
15    42149472    rs1456235    T    C    34.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=5.76;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=Q2862R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42149436_42149692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:4,2:6:64.53:65,0,92
15    42149506    rs12442525    G    C    147.82    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=21.12;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=Q2851E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42149436_42149692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:2,5:7:24.17:178,0,24
15    42149596    rs1197675    C    G    134.47    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.742;DB;DP=17;Dels=0.0;FS=2.796;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.433;QD=7.91;ReadPosRankSum=-0.144;SNPEFF_AMINO_ACID_CHANGE=G2821R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42149436_42149692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:9,8:17:99:164,0,290
15    42150888    rs890503    G    A    640.45    PASS    AB=0.258;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.759;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.868;QD=20.66;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=T2713I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42150800_42150946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:8,23:31:99:670,0,251
15    42155702    rs1197658    A    G    133.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:166,12,0
15    42155812    rs2278966    G    C    447.95    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.313;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.121;QD=10.18;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:27,17:44:99:478,0,852
15    42155841    rs1648841    T    C    966.93    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.796;DB;DP=71;Dels=0.0;FS=1.24;HRun=0;HaplotypeScore=1.6545;MQ=59.35;MQ0=0;MQRankSum=0.318;QD=13.62;ReadPosRankSum=0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:37,34:71:99:997,0,1013
15    42156321    rs1197657    T    C    460.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,16:16:45.09:494,45,0
15    42159290    rs2290553    C    T    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.48;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=R2116Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42159157_42159324;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:3,2:5:67.42:67,0,97
15    42159623    rs8032462    T    C    1359.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9784;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1392,102,0
15    42166500    rs12593397    C    T    780.20    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.86;MQ0=0;MQRankSum=1.092;QD=12.79;ReadPosRankSum=0.679;SNPEFF_AMINO_ACID_CHANGE=R1560H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42166490_42166676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:33,27:61:99:810,0,974
15    42167207    .    C    T    484.26    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.706;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.127;QD=14.67;ReadPosRankSum=0.777;SNPEFF_AMINO_ACID_CHANGE=S1445;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42167040_42167254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:15,18:33:99:514,0,396
15    42167485    rs12902949    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
15    42168400    rs2290559    C    T    477.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.732;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=-1.275;QD=12.58;ReadPosRankSum=1.01;SNPEFF_AMINO_ACID_CHANGE=R1345H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42168312_42168482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:19,19:38:99:508,0,413
15    42170499    rs1201690    T    G    320.12    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=25;Dels=0.0;FS=1.721;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.789;QD=12.8;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:13,12:25:99:350,0,371
15    42170506    rs747780    C    T    356.23    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.895;DB;DP=29;Dels=0.0;FS=1.55;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=12.28;ReadPosRankSum=0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:15,14:29:99:386,0,425
15    42171462    rs12708402    C    T    531.49    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.0;MQ0=0;MQRankSum=-0.177;QD=15.19;ReadPosRankSum=-0.673;SNPEFF_AMINO_ACID_CHANGE=V1060I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42171458_42171697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:13,22:35:99:561,0,405
15    42171537    rs1197683    A    G    964.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=55.66;MQ0=0;QD=29.23;SNPEFF_AMINO_ACID_CHANGE=C1035R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42171458_42171697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,33:33:81.23:997,81,0
15    42171800    rs2271283    T    C    88.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=0.0;QD=12.68;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:3,4:7:79.36:119,0,79
15    42171877    rs1197685    A    G    459.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.5;MQ0=0;QD=24.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,18:19:42.12:493,42,0
15    42173313    rs76003397    G    A    480.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.266;DB;DP=27;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.797;QD=17.78;ReadPosRankSum=-1.62;SNPEFF_AMINO_ACID_CHANGE=D859;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42173232_42173432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:9,18:27:99:510,0,309
15    42175104    rs1197691    G    C    208.80    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.255;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.991;QD=8.35;ReadPosRankSum=-0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:16,9:25:99:239,0,540
15    42175507    rs1197692    T    C    1013.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,28:28:84.26:1047,84,0
15    42178155    rs1210795    T    C    309.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=34.35;SNPEFF_AMINO_ACID_CHANGE=H433R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42177933_42178564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:342,27,0
15    42182442    rs12905012    T    C    106.54    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=19;Dels=0.0;FS=5.815;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.197;QD=5.61;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:11,8:19:99:137,0,374
15    42185439    rs1672459    C    G    576.28    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.357;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.9;MQ0=0;MQRankSum=-0.21;QD=11.3;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320955    GT:AD:DP:GQ:PL    0/1:26,25:51:99:606,0,804
15    42187492    rs1197701    T    C    126.52    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=19;Dels=0.0;FS=8.193;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=6.66;ReadPosRankSum=1.826;SNPEFF_AMINO_ACID_CHANGE=C104R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42184991_42187534;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020659.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309874    GT:AD:DP:GQ:PL    0/1:13,6:19:99:157,0,393
15    42187661    rs1704380    T    C    60.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220325    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:92,9,0
15    42201702    rs890500    T    C    284.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220325    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:317,24,0
15    42211486    rs1704396    A    G    640.35    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=44;Dels=0.0;FS=6.714;HRun=0;HaplotypeScore=0.5784;MQ=59.48;MQ0=0;MQRankSum=-1.01;QD=14.55;ReadPosRankSum=-1.598;SNPEFF_AMINO_ACID_CHANGE=F282;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42211408_42211820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220325    GT:AD:DP:GQ:PL    0/1:23,21:44:99:670,0,587
15    42235316    rs11549015    C    T    177.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.63;SNPEFF_AMINO_ACID_CHANGE=V154I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42235265_42235362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000220325    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:211,15,0
15    42285301    rs937993    A    G    33.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
15    42287578    rs1668586    G    A    1978.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=T380;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42287558_42287694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413860    GT:AD:DP:GQ:PL    1/1:0,58:59:99:2011,150,0
15    42289522    rs1704357    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    42292532    rs1668557    T    C    152.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:185,15,0
15    42293638    rs1668555    G    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    42297092    rs2598464    G    A    129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
15    42298133    rs1704366    A    G    635.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:668,51,0
15    42302119    rs1704369    T    C    213.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
15    42302590    rs1668568    A    G    318.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:351,27,0
15    42305852    rs146948794    A    AGAG    977.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=76.7779;IndelType=I;MQ=53.53;MQ0=0;QD=57.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:2,15:17:45.15:1019,45,0
15    42305998    rs1668565    T    C    439.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:473,36,0
15    42306015    rs1668564    G    A    391.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399518    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:424,33,0
15    42363769    rs1668589    A    G    1358.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290472    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1392,108,0
15    42364652    rs1668587    G    A    1090.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290472    GT:AD:DP:GQ:PL    1/1:0,30:30:87.27:1124,87,0
15    42371752    rs4924618    A    T    390.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.03;SNPEFF_AMINO_ACID_CHANGE=S434T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42371735_42371957;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290472    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:423,33,0
15    42373810    rs11635685    G    C    1480.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.05;MQ0=0;QD=30.22;SNPEFF_AMINO_ACID_CHANGE=P275R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42373677_42373812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290472    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1514,126,0
15    42376212    rs776729    C    T    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290472    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
15    42377744    rs605253    C    G    1611.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290472    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1645,120,0
15    42433382    rs694456    A    T    213.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357924    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:247,18,0
15    42434254    rs655427    G    A    937.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=N822;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42433332_42434402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:971,72,0
15    42434395    .    C    T    118.48    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.155;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=5.15;ReadPosRankSum=0.261;SNPEFF_AMINO_ACID_CHANGE=E775;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42433332_42434402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    0/1:18,5:23:99:148,0,526
15    42434505    rs654527    C    A    170.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
15    42434837    rs1356410    T    C    1234.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=M736V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42434726_42434912;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1267,99,0
15    42435967    rs649588    C    T    92.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.27;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    0/1:5,4:9:99:122,0,182
15    42436002    rs649526    C    T    206.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=14.72;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    0/1:7,7:14:99:236,0,201
15    42436043    rs681264    G    A    418.46    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.792;DB;DP=21;Dels=0.0;FS=5.006;HRun=0;HaplotypeScore=1.5226;MQ=58.89;MQ0=0;MQRankSum=0.951;QD=19.93;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    0/1:8,13:21:99:448,0,191
15    42436599    rs636535    T    C    91.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.11;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,175
15    42437711    rs621560    T    C    760.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=59.47;MQ0=0;MQRankSum=-0.292;QD=14.63;ReadPosRankSum=-0.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290497    GT:AD:DP:GQ:PL    0/1:26,26:52:99:791,0,849
15    42453851    rs148082104    GA    G    2507.24    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=9.091;DB;DP=140;FS=0.714;HRun=1;HaplotypeScore=342.034;IndelType=D;MQ=60.06;MQ0=0;MQRankSum=0.756;QD=17.91;ReadPosRankSum=-0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318006    GT:AD:DP:GQ:PL    0/1:68,72:140:99:2546,0,2831
15    42503678    rs77215191    C    T    72.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318006    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
15    42518824    rs1678989    T    C    701.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389834    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:734,54,0
15    42519136    rs1678988    T    C    1876.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5612;MQ=58.36;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389834    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1909,144,0
15    42520760    rs1678987    C    T    91.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389834    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
15    42520829    rs1712417    T    C    315.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389834    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:349,27,0
15    42521188    rs1678986    G    C    82.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389834    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
15    42523341    rs79425484    T    TC    2621.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=1;HaplotypeScore=166.7668;IndelType=I;MQ=60.67;MQ0=0;QD=39.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389834    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2664,181,0
15    42528676    rs1679012    C    T    2624.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=59.66;MQ0=0;QD=38.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389834    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2658,196,0
15    42531768    rs11070363    C    T    1798.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=39.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389834    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1831,135,0
15    42553218    rs5812215    AT    A    1786.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=1;HaplotypeScore=111.0405;IndelType=D;MQ=60.46;MQ0=0;QD=40.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307216    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1829,132,0
15    42560312    rs2412681    C    T    604.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307216    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:637,48,0
15    42564369    rs4244587    C    T    819.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307216    GT:AD:DP:GQ:PL    1/1:0,32:32:69.22:853,69,0
15    42564370    rs4244588    A    G    800.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307216    GT:AD:DP:GQ:PL    1/1:0,32:32:69.21:834,69,0
15    42565588    rs2277533    C    A    423.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.054;DB;DP=33;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=1.9841;MQ=59.3;MQ0=0;MQRankSum=-0.777;QD=12.84;ReadPosRankSum=-0.343;SNPEFF_AMINO_ACID_CHANGE=A3;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42565453_42565755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM87A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307216    GT:AD:DP:GQ:PL    0/1:18,15:33:99:454,0,486
15    42568547    rs8043515    C    G    977.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=L11V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42568546_42568608;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:1010,75,0
15    42568630    rs8023678    G    A    1081.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6637;MQ=59.3;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:0,33:33:84.26:1115,84,0
15    42570718    rs8024732    A    G    1534.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_AMINO_ACID_CHANGE=Q44R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42570680_42570788;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1568,123,0
15    42579686    rs12902924    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440615    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    42579822    rs11070371    T    C    456.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440615    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:490,36,0
15    42579948    rs8037627    T    C    1303.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=N87;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42579889_42580016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1336,102,0
15    42580106    rs8036596    A    C    482.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440615    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:516,39,0
15    42580305    rs8037100    C    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440615    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
15    42584909    rs4923939    C    T    1170.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=30.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:0,39:39:93.27:1204,93,0
15    42589987    rs4924651    T    C    222.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:255,21,0
15    42589996    rs4924652    C    T    227.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:261,21,0
15    42603083    rs2412694    C    T    1232.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1265,93,0
15    42618531    rs2578652    T    A    911.96    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.908;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.601;QD=13.03;ReadPosRankSum=-1.252;SNPEFF_AMINO_ACID_CHANGE=D443E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42618496_42618622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    0/1:34,36:70:99:942,0,1022
15    42619508    rs1659215    C    T    1858.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.667;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-1.405;QD=34.41;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    1/1:1,53:54:99:1891,107,0
15    42630722    .    G    A    406.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.858;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7262;MQ=59.25;MQ0=0;MQRankSum=0.471;QD=16.26;ReadPosRankSum=-0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GANC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318010    GT:AD:DP:GQ:PL    0/1:10,15:25:99:436,0,316
15    42651900    rs149698681    G    C    540.96    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.714;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-1.261;QD=14.62;ReadPosRankSum=-0.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337522    GT:AD:DP:GQ:PL    0/1:19,18:37:99:571,0,666
15    42680251    rs187256466    A    T    53.92    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.48;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318023    GT:AD:DP:GQ:PL    0/1:1,3:4:28:84,0,28
15    42704105    rs3098423    C    T    327.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318023    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:361,27,0
15    42805000    rs4573906    G    A    172.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249647    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
15    42820451    rs9302112    C    T    1173.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249647    GT:AD:DP:GQ:PL    1/1:0,33:33:90.30:1206,90,0
15    42840523    .    C    T    572.83    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.801;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=57.82;MQ0=0;MQRankSum=0.541;QD=13.32;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323443    GT:AD:DP:GQ:PL    0/1:23,20:43:99:603,0,680
15    42851464    rs11070374    C    T    379.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260372    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:412,30,0
15    42930891    rs1197550    A    T    547.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290607    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:580,42,0
15    42982421    .    C    G    992.62    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7128;MQ=59.27;MQ0=0;MQRankSum=0.817;QD=15.76;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=S2882C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_42976314_42986540;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290607    GT:AD:DP:GQ:PL    0/1:27,36:63:99:1023,0,880
15    43023327    rs74858594    G    A    1043.26    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.171;DB;DP=69;Dels=0.0;FS=2.079;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.919;QD=15.12;ReadPosRankSum=-0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267892    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1073,0,1047
15    43026163    rs140424619    C    T    336.52    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=1.574;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.44;MQ0=0;MQRankSum=-0.44;QD=8.21;ReadPosRankSum=1.319;SNPEFF_AMINO_ACID_CHANGE=R445Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_43026136_43026245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDAN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267892    GT:AD:DP:GQ:PL    0/1:27,14:41:99:367,0,772
15    43028338    .    C    A    543.96    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.665;QD=15.54;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267892    GT:AD:DP:GQ:PL    0/1:16,19:35:99:574,0,469
15    43075531    rs9920092    C    T    1862.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263802    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1896,138,0
15    43075942    rs66489844    T    TA    124.88    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=19;FS=0.0;HRun=15;HaplotypeScore=205.3535;IndelType=I;MQ=53.61;MQ0=0;MQRankSum=-1.733;QD=6.57;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263802    GT:AD:DP:GQ:PL    0/1:10,8:19:6.09:163,0,6
15    43170690    rs10650948    T    TAC    864.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=117.158;IndelType=I;MQ=60.68;MQ0=0;MQRankSum=-0.667;QD=30.88;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263802    GT:AD:DP:GQ:PL    1/1:4,18:28:44.87:907,45,0
15    43170793    rs6493068    A    G    687.61    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=-0.317;QD=9.05;ReadPosRankSum=0.863;SNPEFF_AMINO_ACID_CHANGE=L8P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_43170747_43170882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267890    GT:AD:DP:GQ:PL    0/1:49,27:76:99:718,0,1380
15    43170823    rs16957250    C    T    570.95    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.856;DB;DP=68;Dels=0.0;FS=1.028;HRun=0;HaplotypeScore=0.9469;MQ=58.63;MQ0=0;MQRankSum=1.141;QD=8.4;ReadPosRankSum=-1.128;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_43170747_43170882;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTBK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263802    GT:AD:DP:GQ:PL    0/1:45,23:68:99:601,0,1309
15    43244699    rs2277532    A    G    587.52    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.075;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.183;QD=12.5;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:25,22:47:99:618,0,883
15    43256121    rs2054389    T    C    346.28    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=25;Dels=0.0;FS=4.684;HRun=4;HaplotypeScore=5.799;MQ=59.07;MQ0=0;MQRankSum=-1.435;QD=13.85;ReadPosRankSum=-0.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:11,14:25:99:376,0,315
15    43268787    rs34312632    G    GATAA    408.96    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=36.6955;IndelType=I;MQ=55.21;MQ0=0;MQRankSum=-0.633;QD=40.9;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:4,6:10:99:448,0,194
15    43322113    rs3736054    C    A    1052.18    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=81;Dels=0.0;FS=2.358;HRun=1;HaplotypeScore=0.8321;MQ=59.72;MQ0=0;MQRankSum=-0.893;QD=12.99;ReadPosRankSum=-0.321;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:46,35:81:99:1082,0,1442
15    43324942    rs6493077    C    T    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:68,0,69
15    43328663    rs3784265    C    T    426    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DB;DP=45;Dels=0.0;FS=4.057;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.889;QD=9.47;ReadPosRankSum=-0.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:29,16:45:99:456,0,1062
15    43330175    rs7166596    A    T    197.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:230,18,0
15    43348679    rs78940367    C    T    622.14    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.675;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.68;MQ0=0;MQRankSum=0.71;QD=11.74;ReadPosRankSum=-0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:30,23:53:99:652,0,884
15    43352041    rs4924704    G    A    542.88    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.079;DB;DP=37;Dels=0.0;FS=1.463;HRun=2;HaplotypeScore=0.7887;MQ=59.38;MQ0=0;MQRankSum=0.137;QD=14.67;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:19,18:37:99:573,0,594
15    43378010    rs12905967    C    A    35.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:66,0,32
15    43398108    rs68062403    A    G    540.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290650    GT:AD:DP:GQ:PL    1/1:0,21:21:45.14:573,45,0
15    43453056    rs11070392    C    G    956.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260403    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:990,72,0
15    43478113    rs540587    G    C    155.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260403    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:189,15,0
15    43478511    rs530118    C    T    501.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260403    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:535,42,0
15    43483537    rs495286    T    C    569.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9979;MQ=41.96;MQ0=0;QD=31.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300215    GT:AD:DP:GQ:PL    1/1:0,18:18:54.12:603,54,0
15    43527236    rs579178    A    G    293.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220420    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:326,24,0
15    43568999    rs530683    C    T    663.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452443    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:696,51,0
15    43594352    .    G    A    184.99    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=2.472;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.361;QD=6.85;ReadPosRankSum=1.861;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452443    GT:AD:DP:GQ:PL    0/1:19,8:27:99:215,0,534
15    43635276    rs11634407    A    G    888.12    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.618;DB;DP=59;Dels=0.0;FS=1.084;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.237;QD=15.05;ReadPosRankSum=-0.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389651    GT:AD:DP:GQ:PL    0/1:26,33:59:99:918,0,722
15    43690114    .    T    C    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260383    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,109
15    43784000    rs555252    C    T    1902.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263801    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1936,159,0
15    43817972    .    A    G    2535.31    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.181;DP=178;Dels=0.0;FS=4.462;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.718;QD=14.24;ReadPosRankSum=-1.255;SNPEFF_AMINO_ACID_CHANGE=K1434R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_43813522_43821706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300231    GT:AD:DP:GQ:PL    0/1:86,92:178:99:2565,0,2701
15    43902255    rs140608596    G    A    32.32    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.66;MQ0=2;MQRankSum=-0.736;QD=6.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456110    GT:AD:DP:GQ:PL    0/1:3,2:5:30.29:62,0,30
15    43910121    rs139848805    C    T    376.14    MQFilter40    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=4.49;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=22.85;MQ0=25;MQRankSum=0.312;QD=3.33;ReadPosRankSum=1.144;SNPEFF_AMINO_ACID_CHANGE=P106;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_43909769_43910438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432436    GT:AD:DP:GQ:PL    0/1:82,31:113:99:406,0,1373
15    43927623    .    CA    C    71.38    QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=3.612;DP=158;FS=0.0;HRun=12;HaplotypeScore=588.2849;IndelType=D;MQ=54.11;MQ0=0;MQRankSum=0.748;QD=0.45;ReadPosRankSum=0.108;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415968    GT:AD:DP:GQ:PL    0/1:134,19:158:99:110,0,2723
15    43932348    rs188961241    C    T    50.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.57;MQ0=1;QD=10.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299989    GT:AD:DP:GQ:PL    1/1:1,4:5:9.01:83,9,0
15    44028569    rs56181031    G    C    907.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=31.34;MQ0=10;QD=20.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CATSPER2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416302    GT:AD:DP:GQ:PL    1/1:2,43:45:84.19:941,84,0
15    44037533    rs61158558    CAG    C    1018.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=82.7198;IndelType=D;MQ=58.07;MQ0=0;QD=46.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300289    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:1061,66,0
15    44038463    rs7174732    C    A    34.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.4;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300289    GT:AD:DP:GQ:PL    1/1:0,3:3:6:65,6,0
15    44038899    rs2411284    C    T    872.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.12;MQ0=0;QD=31.17;SNPEFF_AMINO_ACID_CHANGE=A29;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_44038889_44038904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538826    GT:AD:DP:GQ:PL    1/1:1,26:27:69.22:906,69,0
15    44053617    rs8040336    C    T    2008.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446523    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2042,153,0
15    44060542    rs116994383    G    A    62.15    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=5.65;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319359    GT:AD:DP:GQ:PL    0/1:8,3:11:92.15:92,0,233
15    44061802    rs1053492    C    T    1541.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=50.53;MQ0=0;QD=34.25;SNPEFF_AMINO_ACID_CHANGE=H182;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_44061716_44061844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537673    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1574,117,0
15    44062874    rs7181912    A    T    148.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319359    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:181,15,0
15    44068160    rs3844075    C    G    852.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497700    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:885,66,0
15    44084282    rs6493090    A    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SERINC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249714    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
15    44090854    rs654276    T    C    291.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_15_44088340_44092346;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406925    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
15    44091351    rs656473    A    T    1215.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=28.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249786    GT:AD:DP:GQ:PL    1/1:0,42:42:93.30:1248,93,0
15    44120559    rs678084    T    G    935.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=S153A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_44120163_44120564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR76;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263795    GT:AD:DP:GQ:PL    1/1:0,29:29:69.23:968,69,0
15    44176936    rs146504694    C    T    145.74    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;MQRankSum=-1.505;QD=6.07;ReadPosRankSum=-0.665;SNPEFF_AMINO_ACID_CHANGE=P305;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_44176925_44176993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449926    GT:AD:DP:GQ:PL    0/1:18,6:24:99:176,0,510
15    44751507    rs186797277    C    T    187.29    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.4;MQ0=0;MQRankSum=-0.387;QD=17.03;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDSPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260327    GT:AD:DP:GQ:PL    0/1:5,6:11:99:217,0,144
15    44778936    rs2453275    T    A    1365.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DB;DP=78;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=9.3812;MQ=54.26;MQ0=0;MQRankSum=1.635;QD=17.5;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDSPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260327    GT:AD:DP:GQ:PL    1/1:3,75:78:99:1398,135,0
15    44778956    .    G    GT    30.86    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=56;FS=0.0;HRun=18;HaplotypeScore=539.1796;IndelType=I;MQ=52.31;MQ0=0;MQRankSum=0.283;QD=0.55;ReadPosRankSum=-0.698;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDSPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260327    GT:AD:DP:GQ:PL    0/1:44,7:56:69.89:70,0,230
15    44900675    rs36014111    C    T    183.51    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.905;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.255;QD=5.24;ReadPosRankSum=0.884;SNPEFF_AMINO_ACID_CHANGE=L1140;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_44900642_44900803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261866    GT:AD:DP:GQ:PL    0/1:27,8:35:99:214,0,812
15    44903285    rs12909507    C    A    156.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=53.03;MQ0=0;QD=22.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261866    GT:AD:DP:GQ:PL    1/1:1,6:7:15.05:189,15,0
15    44943757    rs3759871    A    G    1153.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=F463S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_44943689_44944137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261866    GT:AD:DP:GQ:PL    1/1:0,38:38:93.26:1187,93,0
15    44951174    rs7165146    A    G    1235.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261866    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1269,105,0
15    45026171    rs1137516    G    C    972.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329464    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1005,75,0
15    45028710    rs2470908    T    C    133.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338264    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
15    45028919    rs2468068    C    CT    533.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.514;DB;DP=28;FS=3.183;HRun=11;HaplotypeScore=104.7554;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=0.4;QD=19.04;ReadPosRankSum=-0.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329464    GT:AD:DP:GQ:PL    1/1:6,20:28:36.04:575,36,0
15    45047134    rs2470911    G    A    2701.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=D15N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45047098_45047574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM69;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329464    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2735,199,0
15    45047573    rs3100139    C    T    1592.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=T161M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45047098_45047574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM69;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329464    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1626,120,0
15    45059390    rs6493127    C    T    1499.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=25.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329464    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1532,135,0
15    45060014    rs3100143    A    T    467.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329464    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:500,39,0
15    45119115    .    G    T    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
15    45250755    rs373082    C    T    409.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340827    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:442,36,0
15    45250756    rs75560370    A    G    405.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340827    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:438,36,0
15    45353230    rs2854446    C    T    280.96    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=12;Dels=0.0;FS=10.414;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.448;QD=23.41;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267814    GT:AD:DP:GQ:PL    0/1:1,11:12:9.91:311,0,10
15    45353365    rs11542063    G    A    682.84    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=56;Dels=0.0;FS=10.821;HRun=0;HaplotypeScore=1.9048;MQ=59.33;MQ0=0;MQRankSum=-0.898;QD=12.19;ReadPosRankSum=-0.009;SNPEFF_AMINO_ACID_CHANGE=T122;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45353265_45353424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267814    GT:AD:DP:GQ:PL    0/1:29,26:56:99:713,0,747
15    45357410    rs2854437    T    G    1129.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.31;MQ0=1;QD=14.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267814    GT:AD:DP:GQ:PL    1/1:0,76:76:90.25:1163,90,0
15    45360587    rs2019651    G    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SORD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267814    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:79,6,0
15    45387550    rs199138    A    G    1170.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1204,93,0
15    45388382    rs2554451    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    45391566    rs269869    A    T    482.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.82;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:516,39,0
15    45392075    rs269868    G    A    764.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.23;SNPEFF_AMINO_ACID_CHANGE=S1067L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45391860_45392090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:798,60,0
15    45398965    rs269862    G    T    680.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=37.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:714,54,0
15    45399467    rs190599    A    G    2242.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.65;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,65:66:99:2276,175,0
15    45400164    rs269861    T    C    659.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:692,54,0
15    45400358    rs269860    C    G    1402.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=29.23;SNPEFF_AMINO_ACID_CHANGE=G487;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45400245_45400420;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1436,114,0
15    45402940    rs269859    A    G    553.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.03;MQ0=1;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:587,45,0
15    45403017    rs74011359    A    G    171.76    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.94;MQ0=1;MQRankSum=-0.387;QD=14.31;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    0/1:5,7:12:99:202,0,163
15    45403037    rs113800136    G    A    73.19    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.15;MQ0=1;MQRankSum=-0.406;QD=10.46;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    0/1:3,4:7:99:103,0,107
15    45403664    rs35157799    G    A    30.30    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=39.81;MQ0=0;MQRankSum=-0.937;QD=3.79;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=F211;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45403582_45403783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    0/1:4,4:8:60.29:60,0,60
15    45404066    rs2001616    G    A    121.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=12.18;SNPEFF_AMINO_ACID_CHANGE=P138L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45403966_45404153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389039    GT:AD:DP:GQ:PL    1/1:0,10:10:12.04:154,12,0
15    45404979    rs182090    T    G    649.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267803    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:683,51,0
15    45405463    rs269856    G    T    117.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=23.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267803    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:150,12,0
15    45408414    rs2576090    C    G    2487.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=R100G;SNPEFF_CODON_CHANGE=Cgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45408322_45408456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323030    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2521,196,0
15    45408691    rs2576091    C    G    1804.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.69;MQ0=0;QD=25.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267803    GT:AD:DP:GQ:PL    1/1:0,71:71:99:1837,153,0
15    45408699    rs2252371    C    T    2304.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.09;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267803    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2338,178,0
15    45408710    rs2554459    A    G    2416.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.19;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267803    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2450,196,0
15    45408933    rs2576092    T    C    435.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267803    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:468,39,0
15    45409013    rs2252479    G    A    108.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267803    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:141,12,0
15    45409271    rs955152    C    T    265.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267803    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:298,24,0
15    45413541    rs17594910    T    C    74.16    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.24;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323030    GT:AD:DP:GQ:PL    0/1:5,4:9:99:104,0,141
15    45414944    rs112736714    T    G    93.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=7.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323030    GT:AD:DP:GQ:PL    0/1:8,4:12:99:123,0,265
15    45424286    rs1706810    C    G    1751.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1785,138,0
15    45425864    rs1648282    G    A    128.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
15    45430276    rs72204897    A    ATGTG    516.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=132.3495;IndelType=I;MQ=56.63;MQ0=0;QD=20.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:16,8:25:26.83:558,27,0
15    45432055    rs1706765    T    G    37.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
15    45433646    rs1648283    T    G    1001.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.25;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,30:31:81.24:1035,81,0
15    45437272    rs77233266    C    T    458.39    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.341;QD=14.79;ReadPosRankSum=1.341;SNPEFF_AMINO_ACID_CHANGE=F772;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45437093_45437278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    0/1:13,18:31:99:488,0,335
15    45439910    rs938129    A    G    654.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.95;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:688,51,0
15    45442687    rs1706803    G    C    154.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:187,15,0
15    45444518    rs1706804    A    G    648.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=T1076;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45444484_45444714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:682,57,0
15    45445499    rs1648304    G    C    437.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:1,14:15:36.11:470,36,0
15    45445691    .    AAT    A    636.21    PASS    AC=2;AF=1.00;AN=2;DP=26;FS=0.0;HRun=0;HaplotypeScore=189.3638;IndelType=D;MQ=48.24;MQ0=0;QD=24.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:20,6:26:58.17:678,58,0
15    45446084    rs35447034    CA    C    208.16    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.492;DB;DP=25;FS=0.0;HRun=14;HaplotypeScore=197.0776;IndelType=D;MQ=55.02;MQ0=2;MQRankSum=1.616;QD=7.71;ReadPosRankSum=1.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    0/1:8,17:25:4:246,0,4
15    45446156    rs2458236    C    T    1296.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.02;MQ0=0;QD=28.81;SNPEFF_AMINO_ACID_CHANGE=L1178F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45446149_45446198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1330,99,0
15    45453237    rs7495495    G    A    174.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=19.35;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    0/1:3,6:9:99:204,0,99
15    45454720    rs1706811    G    A    198.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290894    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
15    45456194    rs1648314    G    A    1300.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.42;MQ0=0;QD=32.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290894    GT:AD:DP:GQ:PL    1/1:0,40:40:96.32:1333,96,0
15    45456221    rs1706813    C    G    854.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290894    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:888,66,0
15    45460422    rs1706816    A    G    250.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321429    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:283,21,0
15    45467540    rs1632144    C    G    569.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=A167P;SNPEFF_CODON_CHANGE=Gcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45467417_45467623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413198    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:603,48,0
15    45545378    rs67280101    GC    G    509.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=3;HaplotypeScore=45.1408;IndelType=D;MQ=62.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347644    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:551,45,0
15    45545478    rs61637002    C    T    784.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=P22L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45545398_45545494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347644    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:817,60,0
15    45554267    rs1060896    C    A    2548.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.544;QD=35.89;ReadPosRankSum=-1.534;SNPEFF_AMINO_ACID_CHANGE=S75R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45554213_45554304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347644    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2581,193,0
15    45556829    rs11631021    A    G    744.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347644    GT:AD:DP:GQ:PL    1/1:0,23:24:63.17:778,63,0
15    45557456    rs11632419    C    A    442.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347644    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:476,39,0
15    45557468    rs2271438    A    G    322.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347644    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:355,27,0
15    45567871    rs2458225    T    C    408.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.12;MQ0=0;QD=29.18;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347644    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:441,39,0
15    45658681    rs146057680    T    C    531.81    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.82;DB;DP=47;Dels=0.0;FS=1.191;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.351;QD=11.32;ReadPosRankSum=-0.819;SNPEFF_AMINO_ACID_CHANGE=D234G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45658569_45658706;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396659    GT:AD:DP:GQ:PL    0/1:23,24:47:99:562,0,613
15    45707063    .    A    G    71.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA5L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525552    GT:AD:DP:GQ:PL    0/1:2,3:5:71.54:102,0,72
15    45777344    rs1153829    T    C    221.11    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.132;DB;DP=27;Dels=0.0;FS=1.653;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.344;QD=8.19;ReadPosRankSum=-0.712;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261867    GT:AD:DP:GQ:PL    0/1:16,11:27:99:251,0,425
15    45779810    rs2453531    G    A    2688.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_AMINO_ACID_CHANGE=D305;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_45779725_45779830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC30A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261867    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2722,208,0
15    45848230    .    CT    C    37.74    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=0.888;DP=34;FS=0.0;HRun=16;HaplotypeScore=170.0575;IndelType=D;MQ=57.85;MQ0=0;MQRankSum=-0.462;QD=1.11;ReadPosRankSum=-0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HMGN2P46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421698    GT:AD:DP:GQ:PL    0/1:23,7:34:76.77:77,0,216
15    45968535    rs12914266    A    C    644.49    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=50;Dels=0.0;FS=2.986;HRun=1;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;MQRankSum=0.256;QD=12.89;ReadPosRankSum=1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SQRDL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260324    GT:AD:DP:GQ:PL    0/1:29,21:50:99:674,0,944
15    48023229    rs150484536    A    G    56.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316364    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:87,6,0
15    48053730    rs9920019    A    G    268.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.087;DB;DP=24;Dels=0.0;FS=7.196;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.954;QD=11.18;ReadPosRankSum=0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316364    GT:AD:DP:GQ:PL    0/1:15,9:24:99:298,0,521
15    48054072    rs8023364    G    A    127.79    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.13;ReadPosRankSum=-2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316364    GT:AD:DP:GQ:PL    0/1:9,5:14:99:158,0,341
15    48054311    rs117854445    G    A    308.60    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=3.963;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.39;MQ0=0;MQRankSum=0.642;QD=10.64;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316364    GT:AD:DP:GQ:PL    0/1:17,12:29:99:339,0,453
15    48055932    rs483656    T    C    572.24    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=2.993;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.25;MQ0=0;MQRankSum=0.846;QD=18.46;ReadPosRankSum=-0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316364    GT:AD:DP:GQ:PL    0/1:11,20:31:99:602,0,348
15    48058071    rs532598    G    A    662.51    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.266;DB;DP=47;Dels=0.0;FS=2.552;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.16;QD=14.1;ReadPosRankSum=-1.969;SNPEFF_AMINO_ACID_CHANGE=S478N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_48058066_48058206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316364    GT:AD:DP:GQ:PL    0/1:24,23:47:99:693,0,858
15    48059137    rs35781153    CT    C    283.59    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=32;FS=0.0;HRun=12;HaplotypeScore=116.3344;IndelType=D;MQ=57.05;MQ0=0;MQRankSum=-1.187;QD=8.86;ReadPosRankSum=1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389425    GT:AD:DP:GQ:PL    0/1:14,17:32:99:323,0,270
15    48059323    rs576914    C    A    676.24    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.578;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.445;QD=18.28;ReadPosRankSum=-0.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389425    GT:AD:DP:GQ:PL    0/1:11,26:37:99:706,0,318
15    48063076    rs568215    T    C    614.52    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.665;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=10.97;ReadPosRankSum=-1.411;SNPEFF_AMINO_ACID_CHANGE=P697;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_48062694_48066417;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389428    GT:AD:DP:GQ:PL    0/1:31,25:56:99:645,0,1030
15    48443699    rs2470103    T    C    7801.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=241;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.0827;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=Q38R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_48443670_48443768;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454655    GT:AD:DP:GQ:PL    1/1:0,241:241:99:7801,608,0
15    48450517    rs3736482    T    C    329.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267836    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:363,27,0
15    48450800    rs3736483    G    C    194.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267836    GT:AD:DP:GQ:PL    1/1:0,7:7:21.02:228,21,0
15    48460786    rs11070626    T    C    1376.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267836    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1410,105,0
15    48460927    rs8023906    C    T    2977.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.74;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=A91T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_48460828_48461036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYEF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267836    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3010,223,0
15    48538979    rs35669481    A    AAAC    1799.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=301.1748;IndelType=I;MQ=59.19;MQ0=0;QD=51.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:5,28:35:96.32:1841,96,0
15    48539026    rs11636073    A    T    2566.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=58.83;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2599,208,0
15    48539043    rs8028035    G    A    3616.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.02;MQ0=0;QD=37.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3617,274,0
15    48541700    rs2279365    G    A    2909.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2943,214,0
15    48561834    rs1484551    A    G    2744.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2778,217,0
15    48562180    rs8028210    C    A    416.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:450,33,0
15    48580713    rs1552311    T    C    4090.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9025;MQ=59.86;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=V958A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_48580602_48580713;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4090,319,0
15    48594823    rs35095948    C    CAAA    317.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=24;HaplotypeScore=237.8834;IndelType=I;MQ=29.83;MQ0=0;QD=22.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:6,5:14:37.16:360,37,0
15    48595192    rs8025278    G    T    600.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=35.35;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:634,48,0
15    48595366    rs12902028    A    G    80.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=26.73;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380993    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
15    48713996    rs1820488    G    T    180.82    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.9996;MQ=58.11;MQ0=0;MQRankSum=0.0;QD=18.08;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:4,6:10:99:211,0,105
15    48720271    rs3929051    C    T    118.46    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=13.16;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537463    GT:AD:DP:GQ:PL    0/1:4,5:9:82.52:148,0,83
15    48720526    rs363832    G    C    164.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-1.452;QD=9.13;ReadPosRankSum=0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537463    GT:AD:DP:GQ:PL    0/1:12,6:18:99:194,0,405
15    48729648    rs2042746    T    C    298.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.561;DB;DP=27;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=-0.22;QD=11.07;ReadPosRankSum=-0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:15,12:27:99:329,0,491
15    48736684    rs2303502    A    T    766.22    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=1.663;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.291;QD=15.32;ReadPosRankSum=0.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:21,29:50:99:796,0,665
15    48755168    rs9806595    T    C    470.46    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=29;Dels=0.0;FS=4.21;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=16.22;ReadPosRankSum=-0.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:11,18:29:99:500,0,341
15    48760897    rs11855195    G    A    74.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:104,0,31
15    48763008    rs75227249    A    T    54.69    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=4.97;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:8,3:11:84.69:85,0,243
15    48764655    rs67860867    TAA    T    39.38    QDFilter2    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.537;DB;DP=72;FS=14.149;HRun=20;HaplotypeScore=663.4589;IndelType=D;MQ=47.39;MQ0=0;MQRankSum=1.112;QD=0.55;ReadPosRankSum=0.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:46,11:72:78.41:78,0,401
15    48765033    rs28730794    A    C    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.43;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,145
15    48779402    rs11853943    C    T    657.73    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=2.35;DB;DP=46;Dels=0.0;FS=1.154;HRun=1;HaplotypeScore=0.9332;MQ=59.5;MQ0=0;MQRankSum=0.67;QD=14.3;ReadPosRankSum=1.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:22,24:46:99:688,0,672
15    48789634    rs140605    T    C    368.64    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=27;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.237;QD=13.65;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:13,14:27:99:399,0,403
15    48795877    rs16961033    G    A    196.80    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=15.14;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:6,7:13:99:227,0,142
15    48797124    rs35464791    T    A    463.33    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.701;DB;DP=37;Dels=0.0;FS=3.05;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.015;QD=12.52;ReadPosRankSum=0.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:21,16:37:99:493,0,751
15    48797307    rs25458    A    G    1168.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.942;DB;DP=72;Dels=0.0;FS=0.968;HRun=0;HaplotypeScore=1.9612;MQ=59.48;MQ0=0;MQRankSum=1.125;QD=16.22;ReadPosRankSum=1.274;SNPEFF_AMINO_ACID_CHANGE=N625;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_48797222_48797344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:30,42:72:99:1198,0,977
15    48797424    rs8037304    C    A    237.13    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=12.48;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:8,10:19:99:267,0,283
15    48805637    rs2306352    G    A    310.75    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.342;QD=18.28;ReadPosRankSum=-1.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:7,10:17:99:341,0,235
15    48807637    rs4775765    C    T    1549.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=C472Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_48807584_48807724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1583,123,0
15    48813107    rs2413907    G    T    204.53    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.817;QD=15.73;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:5,8:13:99:235,0,168
15    48826427    .    GA    G    855    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=4.394;DP=161;DS;FS=1.934;HRun=12;HaplotypeScore=556.2964;IndelType=D;MQ=58.99;MQ0=0;MQRankSum=0.924;QD=5.31;ReadPosRankSum=1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    0/1:102,57:161:99:894,0,1829
15    48903126    rs1018148    A    G    169.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316623    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
15    49040864    rs34352957    TA    T    96.96    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.086;DB;DP=26;FS=0.0;HRun=16;HaplotypeScore=175.4483;IndelType=D;MQ=52.45;MQ0=0;MQRankSum=0.296;QD=3.73;ReadPosRankSum=1.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP152;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325747    GT:AD:DP:GQ:PL    0/1:8,13:26:13.01:136,0,13
15    49088486    rs5812462    TACAC    T    208.01    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=82.0954;IndelType=D;MQ=61.88;MQ0=0;MQRankSum=0.573;QD=12.24;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP152;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325747    GT:AD:DP:GQ:PL    0/1:11,6:17:99:247,0,165
15    49098016    rs1426200    C    A    113.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP152;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325747    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:146,12,0
15    49127134    rs1426199    G    A    253.99    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.28;QD=12.09;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=S237;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_49126966_49127219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537958    GT:AD:DP:GQ:PL    0/1:10,11:21:99:284,0,270
15    49148356    rs16961733    C    A    812.45    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=45;Dels=0.0;FS=3.303;HRun=0;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.05;ReadPosRankSum=0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332408    GT:AD:DP:GQ:PL    0/1:19,26:45:99:842,0,470
15    49149828    rs4774526    C    T    1487.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332408    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1520,111,0
15    49255422    rs4583185    T    C    42.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.24;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_49254628_49255641;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332408    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
15    49288880    rs5812470    G    GAC    343.20    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.512;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=45.7315;IndelType=I;MQ=59.32;MQ0=0;MQRankSum=0.241;QD=19.07;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECISBP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261847    GT:AD:DP:GQ:PL    0/1:10,8:18:99:382,0,327
15    49301293    rs7167402    A    C    147.30    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=13.39;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECISBP2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261847    GT:AD:DP:GQ:PL    0/1:5,6:11:99:177,0,167
15    49325289    rs11638215    A    C    541.62    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.96;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.531;QD=12.9;ReadPosRankSum=-1.061;SNPEFF_AMINO_ACID_CHANGE=L179;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_49325162_49325297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECISBP2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261847    GT:AD:DP:GQ:PL    0/1:23,19:42:99:572,0,753
15    49421868    rs507054    T    G    37.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.36;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299259    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:67,0,32
15    49422885    rs2289389    T    G    948.22    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=3.809;DB;DP=51;Dels=0.0;FS=4.906;HRun=1;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;MQRankSum=-0.36;QD=18.59;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299259    GT:AD:DP:GQ:PL    0/1:19,32:51:99:978,0,585
15    49423098    rs2289390    C    T    97.81    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=8.89;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299259    GT:AD:DP:GQ:PL    0/1:6,5:11:99:128,0,214
15    49425756    rs34147325    A    AAGT    554.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=26.2914;IndelType=I;MQ=50.35;MQ0=0;QD=55.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299259    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:596,27,0
15    49426048    rs11858814    G    A    428.89    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=32;Dels=0.0;FS=1.446;HRun=3;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=13.4;ReadPosRankSum=1.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299259    GT:AD:DP:GQ:PL    0/1:17,15:32:99:459,0,529
15    49432016    rs489813    C    T    174.45    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.656;QD=13.42;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299259    GT:AD:DP:GQ:PL    0/1:7,6:13:99:204,0,234
15    49432064    rs490621    G    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299259    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
15    49448012    rs17435932    C    A    275.86    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.299;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=16.23;ReadPosRankSum=1.395;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299259    GT:AD:DP:GQ:PL    0/1:8,9:17:99:306,0,280
15    49620971    rs33957781    AT    A    273.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.35;DB;DP=38;FS=0.0;HRun=15;HaplotypeScore=217.4374;IndelType=D;MQ=58.12;MQ0=0;MQRankSum=0.261;QD=7.2;ReadPosRankSum=1.828;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543495    GT:AD:DP:GQ:PL    1/1:10,23:38:14.38:315,14,0
15    49663405    rs12903238    G    A    429.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.69;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.48;MQ0=0;MQRankSum=-0.334;QD=11.92;ReadPosRankSum=0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    0/1:20,16:36:99:459,0,688
15    49716478    rs17478047    C    T    692.19    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.391;DB;DP=67;Dels=0.0;FS=3.891;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=2.15;QD=10.33;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    0/1:39,27:67:99:722,0,1118
15    49716845    rs16962440    T    C    437.63    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=0.962;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=25.74;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    0/1:4,13:17:99:468,0,111
15    49776431    rs12438444    C    T    163.39    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.35;MQ0=1;MQRankSum=-0.815;QD=8.17;ReadPosRankSum=0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    0/1:12,7:19:99:193,0,395
15    49800394    rs58845336    G    A    549.72    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=1.014;DB;DP=70;Dels=0.0;FS=3.372;HRun=3;HaplotypeScore=1.6584;MQ=59.73;MQ0=0;MQRankSum=-1.774;QD=7.85;ReadPosRankSum=-1.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    0/1:43,27:70:99:580,0,1361
15    49867122    rs12901416    A    G    503.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:537,42,0
15    49867148    rs12902794    T    C    1122.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    1/1:0,29:29:84.28:1156,84,0
15    49867323    rs12902107    G    A    1454.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1488,111,0
15    49869141    rs12912703    C    G    171    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=15.55;ReadPosRankSum=1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299338    GT:AD:DP:GQ:PL    0/1:5,6:11:99:201,0,171
15    50087964    rs61096655    C    A    321.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.243;DB;DP=18;Dels=0.0;FS=7.259;HRun=1;HaplotypeScore=1.5717;MQ=57.64;MQ0=0;MQRankSum=0.044;QD=17.87;ReadPosRankSum=2.443;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,10:18:99:352,0,225
15    50152583    rs4774549    G    T    2281.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=36.8;SNPEFF_AMINO_ACID_CHANGE=G1129;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50150435_50152672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2314,178,0
15    50189448    rs2413976    C    A    1455.45    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.985;DB;DP=105;Dels=0.0;FS=4.556;HRun=5;HaplotypeScore=2.4097;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=13.86;ReadPosRankSum=0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:51,54:105:99:1485,0,1794
15    50193070    rs12914341    T    C    53.76    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=10.75;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:2,3:5:67.97:84,0,68
15    50193553    rs2009833    G    A    75.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.06;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:2,3:5:63.98:105,0,64
15    50209357    rs35453457    G    A    190.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=21.15;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:3,6:9:99:220,0,100
15    50212572    rs72733094    G    T    439.18    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.982;DB;DP=30;Dels=0.0;FS=4.091;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.24;QD=14.64;ReadPosRankSum=0.807;SNPEFF_AMINO_ACID_CHANGE=I598;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50212443_50212607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:16,14:30:99:469,0,523
15    50215854    rs76407108    C    T    91.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.6;QD=7.65;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:8,4:12:99:122,0,286
15    50226313    rs2452524    G    T    2915.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=H452N;SNPEFF_CODON_CHANGE=Cat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50226214_50226379;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2948,223,0
15    50254280    rs12442430    T    C    676    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:709,54,0
15    50272082    rs72734846    C    T    75.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.73;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,125
15    50272085    rs8034382    A    G    116.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.59;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:3,4:7:99:146,0,103
15    50279662    rs16963151    T    C    1014.74    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.616;DB;DP=73;Dels=0.0;FS=3.214;HRun=0;HaplotypeScore=2.1877;MQ=59.37;MQ0=0;MQRankSum=0.512;QD=13.9;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=N225S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50279588_50279746;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:38,35:73:99:1045,0,1091
15    50289094    rs72734852    C    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:2,2:4:70.28:72,0,70
15    50399011    rs56757311    C    T    186.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=18.62;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284509    GT:AD:DP:GQ:PL    0/1:4,6:10:99:216,0,130
15    50474766    rs1648348    A    C    66.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=8.35;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=K48Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50474394_50475102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:4,4:8:96.83:97,0,135
15    50474900    rs34490804    C    T    780.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=58;Dels=0.0;FS=1.137;HRun=0;HaplotypeScore=5.1268;MQ=58.8;MQ0=0;MQRankSum=1.477;QD=13.45;ReadPosRankSum=0.375;SNPEFF_AMINO_ACID_CHANGE=A92;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50474394_50475102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:29,29:58:99:810,0,891
15    50489677    rs1863511    A    T    1128.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1162,90,0
15    50490042    rs933857    G    A    117.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
15    50490078    rs2433283    C    G    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
15    50497294    rs17415911    A    G    117.94    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.398;QD=10.72;ReadPosRankSum=-1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:4,7:11:99:148,0,131
15    50497354    rs2278166    G    T    1130.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.542;QD=34.27;ReadPosRankSum=-0.325;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    1/1:1,32:33:90.25:1164,90,0
15    50518087    rs8024292    T    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:71,0,70
15    50518146    rs8043431    A    G    227.35    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=16.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:6,8:14:99:257,0,201
15    50521265    rs5812509    T    TA    513.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=23.8317;IndelType=I;MQ=60.83;MQ0=0;QD=39.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:556,39,0
15    50526030    rs16963464    T    A    212.93    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.678;QD=14.2;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:8,7:15:99:243,0,232
15    50526249    rs17848313    A    T    183.80    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.387;DB;DP=26;Dels=0.0;FS=5.557;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.636;QD=7.07;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:19,7:26:99:214,0,643
15    50527914    rs8029462    A    G    40.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:70,0,32
15    50527931    rs8030902    T    C    76.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:2,3:5:59.31:107,0,59
15    50528414    rs1802536    C    A    174.65    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.43;ReadPosRankSum=-0.555;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267842    GT:AD:DP:GQ:PL    0/1:7,6:13:99:205,0,221
15    50555544    rs17740607    G    A    851.77    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.734;DB;DP=50;Dels=0.0;FS=7.829;HRun=0;HaplotypeScore=0.9469;MQ=59.54;MQ0=0;MQRankSum=-0.693;QD=17.04;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=T31M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50555432_50555604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000267845    GT:AD:DP:GQ:PL    0/1:22,28:50:99:882,0,680
15    50570999    rs35773490    G    GT    852.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=10;HaplotypeScore=114.0644;IndelType=I;MQ=58.88;MQ0=0;QD=25.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220429    GT:AD:DP:GQ:PL    1/1:6,27:34:87.05:894,87,0
15    50571061    rs71993721    T    TA    107.80    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=14;FS=0.0;HRun=11;HaplotypeScore=43.5801;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=-1.813;QD=7.7;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220429    GT:AD:DP:GQ:PL    0/1:8,6:14:99:147,0,103
15    50581634    rs34330339    T    TA    195.24    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.622;DB;DP=29;FS=3.388;HRun=12;HaplotypeScore=105.4935;IndelType=I;MQ=59.53;MQ0=0;MQRankSum=1.043;QD=6.73;ReadPosRankSum=-0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220429    GT:AD:DP:GQ:PL    0/1:17,11:29:99:234,0,212
15    50596070    rs7164798    T    C    88.86    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.326;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.457;QD=5.92;ReadPosRankSum=-1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220429    GT:AD:DP:GQ:PL    0/1:11,4:15:99:119,0,411
15    50601811    rs11636564    T    C    742.77    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.025;QD=13.5;ReadPosRankSum=-1.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220429    GT:AD:DP:GQ:PL    0/1:31,24:55:99:773,0,1096
15    50602067    rs35446819    T    C    256.44    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.695;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.63;QD=10.26;ReadPosRankSum=-1.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220429    GT:AD:DP:GQ:PL    0/1:14,11:25:99:286,0,497
15    50751050    rs3098168    T    C    76.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.05;MQ0=0;MQRankSum=0.421;QD=9.54;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307179    GT:AD:DP:GQ:PL    0/1:4,4:8:99:106,0,123
15    50754687    rs114283306    T    G    31.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=6.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307179    GT:AD:DP:GQ:PL    0/1:3,2:5:61.73:62,0,102
15    50773755    rs3131561    G    A    1490.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_AMINO_ACID_CHANGE=Q355;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50773678_50774262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425032    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1523,111,0
15    50776525    rs10220843    T    C    613.22    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=2.724;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.568;QD=12.26;ReadPosRankSum=-0.805;SNPEFF_AMINO_ACID_CHANGE=F619;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50776472_50776558;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307179    GT:AD:DP:GQ:PL    0/1:23,27:50:99:643,0,687
15    50782335    rs2289108    G    A    224.32    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=5.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.43;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307179    GT:AD:DP:GQ:PL    0/1:3,7:10:76.33:254,0,76
15    50821945    rs3098200    G    A    727.72    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.146;DB;DP=64;Dels=0.0;FS=6.872;HRun=0;HaplotypeScore=1.8533;MQ=58.91;MQ0=0;MQRankSum=0.063;QD=11.37;ReadPosRankSum=-0.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532404    GT:AD:DP:GQ:PL    0/1:36,28:64:99:758,0,1244
15    50822277    rs3109896    A    G    898.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532404    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:931,72,0
15    50833113    rs2003359    A    G    74.32    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=56.35;MQ0=0;MQRankSum=-0.696;QD=5.72;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532404    GT:AD:DP:GQ:PL    0/1:8,5:13:99:104,0,247
15    50835679    rs2135451    G    C    185.63    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.056;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=9.77;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532404    GT:AD:DP:GQ:PL    0/1:12,7:19:99:216,0,437
15    50854029    rs113891105    T    TA    50.26    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=17;FS=3.123;HRun=12;HaplotypeScore=80.4769;IndelType=I;MQ=55.66;MQ0=0;MQRankSum=0.212;QD=2.96;ReadPosRankSum=-2.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:11,5:17:89.29:89,0,136
15    50867082    rs473357    G    A    1204.92    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=61;Dels=0.0;FS=3.684;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.406;QD=19.75;ReadPosRankSum=-0.275;SNPEFF_AMINO_ACID_CHANGE=Y1662;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50867049_50867332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:23,38:61:99:1235,0,734
15    50867142    rs16963774    C    T    1177.96    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.754;DB;DP=81;Dels=0.0;FS=6.18;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.866;QD=14.54;ReadPosRankSum=0.808;SNPEFF_AMINO_ACID_CHANGE=G1642;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_50867049_50867332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:40,41:81:99:1208,0,1338
15    50867441    rs16963775    G    C    127.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.56;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:6,5:11:99:157,0,219
15    50873121    .    A    AAC    955.39    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.855;DP=76;FS=2.53;HRun=0;HaplotypeScore=230.808;IndelType=I;MQ=60.12;MQ0=0;MQRankSum=1.327;QD=12.57;ReadPosRankSum=-0.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:52,24:76:99:994,0,1052
15    50885976    rs567109    G    T    532.16    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.291;DB;DP=40;Dels=0.0;FS=7.319;HRun=0;HaplotypeScore=0.8941;MQ=59.53;MQ0=0;MQRankSum=0.802;QD=13.3;ReadPosRankSum=-0.911;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:22,18:40:99:562,0,711
15    50886493    rs644890    C    T    155.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.43;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:3,5:8:99:185,0,101
15    50888619    rs675011    A    T    179.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:213,18,0
15    50899309    rs11633404    C    A    247.73    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=9.18;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:15,12:27:99:278,0,535
15    50901929    rs35281039    TA    T    565.73    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=66;FS=0.0;HRun=13;HaplotypeScore=227.0628;IndelType=D;MQ=60.27;MQ0=0;MQRankSum=0.248;QD=8.57;ReadPosRankSum=0.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:29,36:66:99:605,0,401
15    50903600    rs4775894    C    T    65.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=9.42;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:4,3:7:95.92:96,0,140
15    50920509    .    C    CT    121.87    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DP=32;FS=0.0;HRun=13;HaplotypeScore=109.1046;IndelType=I;MQ=58.5;MQ0=0;MQRankSum=-0.529;QD=3.81;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:22,8:32:99:161,0,106
15    50925063    rs79443717    T    C    730.46    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.259;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=15.22;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:23,25:48:99:760,0,737
15    50926523    rs144003181    AAAATAAAT    A    668.12    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=115.0853;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=0.623;QD=47.72;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    0/1:3,11:14:99:707,0,335
15    50941108    rs2063011    C    G    646.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313478    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:680,51,0
15    51039891    rs17599340    T    C    411.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.85;QD=14.68;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC012100.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261854    GT:AD:DP:GQ:PL    0/1:14,14:28:99:441,0,420
15    51204364    rs1147129    G    A    1747.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.97;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261842    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1780,132,0
15    51204394    rs3214932    C    CT    1424.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=1;HaplotypeScore=165.7544;IndelType=I;MQ=61.38;MQ0=0;QD=45.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261842    GT:AD:DP:GQ:PL    1/1:0,31:31:93.32:1466,93,0
15    51207818    rs2663553    G    C    1497.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.201;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.46;MQ0=0;MQRankSum=1.41;QD=34.82;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261842    GT:AD:DP:GQ:PL    1/1:1,42:43:78.15:1530,78,0
15    51207983    rs1147128    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261842    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
15    51276128    rs2306335    A    G    221.87    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=11.09;ReadPosRankSum=-1.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261842    GT:AD:DP:GQ:PL    0/1:11,9:20:99:252,0,395
15    51293542    .    A    G    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP4E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261842    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
15    51350287    rs78897873    T    G    336.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=30;Dels=0.0;FS=1.527;HRun=2;HaplotypeScore=1.5774;MQ=59.23;MQ0=0;MQRankSum=1.207;QD=11.23;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=N224H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51348801_51350640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP8L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327536    GT:AD:DP:GQ:PL    0/1:18,12:30:99:367,0,606
15    51350655    rs76241791    AT    A    363.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=24.2204;IndelType=D;MQ=62.13;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP8L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327536    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:405,30,0
15    51502844    rs4646    A    C    291.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420301    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:324,27,0
15    51502986    rs10046    G    A    1118.24    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.919;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.63;MQ0=0;MQRankSum=-0.955;QD=13.47;ReadPosRankSum=1.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420301    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1148,0,1285
15    51504811    rs1065779    A    C    501.09    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.71;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.149;QD=14.32;ReadPosRankSum=0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478421    GT:AD:DP:GQ:PL    0/1:18,17:35:99:531,0,618
15    51504934    rs8029120    T    G    37.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478421    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:67,0,32
15    51507508    rs2289105    T    C    215.96    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=16.61;ReadPosRankSum=-0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478421    GT:AD:DP:GQ:PL    0/1:5,8:13:99:246,0,168
15    51507610    rs28757192    C    T    35.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.17;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478421    GT:AD:DP:GQ:PL    0/1:3,2:5:59.29:66,0,59
15    51507782    rs2289106    T    G    323.13    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.107;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.224;QD=12.43;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478421    GT:AD:DP:GQ:PL    0/1:12,14:26:99:353,0,429
15    51508120    rs2304463    A    C    486.86    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.9;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.765;QD=18.03;ReadPosRankSum=0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260433    GT:AD:DP:GQ:PL    0/1:11,16:27:99:517,0,358
15    51510702    rs1143704    T    A    1363.73    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=3.466;DB;DP=89;Dels=0.0;FS=11.656;HRun=2;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.737;QD=15.32;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405913    GT:AD:DP:GQ:PL    0/1:38,51:89:99:1394,0,1205
15    51510868    rs4324076    A    C    873.06    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.487;DB;DP=70;Dels=0.0;FS=2.899;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.726;QD=12.47;ReadPosRankSum=0.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405913    GT:AD:DP:GQ:PL    0/1:36,34:70:99:903,0,1046
15    51514572    rs28757184    G    A    222.84    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=2.024;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.25;MQ0=0;MQRankSum=-0.326;QD=7.19;ReadPosRankSum=-0.022;SNPEFF_AMINO_ACID_CHANGE=T201M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51514546_51514722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260433    GT:AD:DP:GQ:PL    0/1:22,9:31:99:253,0,602
15    51519945    rs28892005    A    AAAG    1079.31    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.664;DB;DP=39;FS=9.787;HRun=0;HaplotypeScore=125.9638;IndelType=I;MQ=56.33;MQ0=0;MQRankSum=-1.747;QD=27.67;ReadPosRankSum=1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405011    GT:AD:DP:GQ:PL    0/1:20,19:39:99:1118,0,742
15    51520206    rs1065778    T    C    240.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-2.048;QD=15.03;ReadPosRankSum=-1.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260433    GT:AD:DP:GQ:PL    0/1:8,8:16:99:271,0,277
15    51529112    rs700518    T    C    475.20    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.16;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1992;MQ=59.2;MQ0=0;MQRankSum=0.373;QD=8.19;ReadPosRankSum=-0.177;SNPEFF_AMINO_ACID_CHANGE=V80;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51529056_51529206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260433    GT:AD:DP:GQ:PL    0/1:35,22:58:99:505,0,973
15    51529166    rs60308277    G    A    603.39    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.237;DB;DP=37;Dels=0.0;FS=4.519;HRun=0;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=1.25;QD=16.31;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=H62;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51529056_51529206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260433    GT:AD:DP:GQ:PL    0/1:18,19:37:99:633,0,596
15    51529265    rs3759811    T    C    108.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=10.9;ReadPosRankSum=1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260433    GT:AD:DP:GQ:PL    0/1:5,5:10:99:139,0,167
15    51535192    rs28757164    G    T    416.60    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=31;Dels=0.0;FS=2.393;HRun=0;HaplotypeScore=1.665;MQ=59.25;MQ0=0;MQRankSum=0.576;QD=13.44;ReadPosRankSum=0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260433    GT:AD:DP:GQ:PL    0/1:17,14:31:99:447,0,579
15    51634255    rs2446421    T    G    950.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=54.37;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:984,81,0
15    51634304    rs11632569    G    T    109.08    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.25;MQ0=0;MQRankSum=-2.935;QD=6.42;ReadPosRankSum=-0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    0/1:8,9:17:99:139,0,279
15    51634312    rs11632571    G    T    79.53    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.24;MQ0=0;MQRankSum=-2.424;QD=6.12;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    0/1:6,7:13:99:110,0,215
15    51634322    rs72363270    TCTTCTCCCCTGGCCAGG    T    642.94    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=240.641;IndelType=D;MQ=50.27;MQ0=0;MQRankSum=-0.825;QD=49.46;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    0/1:7,6:13:99:682,0,1159
15    51675625    rs2445738    C    T    5219.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9975;MQ=59.43;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    1/1:0,147:147:99:5220,376,0
15    51675880    rs11306244    GA    G    256.87    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DB;DP=13;FS=2.92;HRun=1;HaplotypeScore=44.7679;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=1.381;QD=19.76;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    0/1:5,8:13:99:296,0,201
15    51687250    rs75938739    G    A    73.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.21;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,102
15    51689624    rs1147142    A    C    124.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
15    51696422    rs2459399    T    G    710.30    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.148;DB;DP=53;Dels=0.0;FS=5.93;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.156;QD=13.4;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335449    GT:AD:DP:GQ:PL    0/1:25,28:53:99:740,0,799
15    51743718    rs16964357    T    C    144.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=14.49;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,175
15    51748146    rs2061425    T    C    358.02    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=17.05;ReadPosRankSum=-0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:10,11:21:99:388,0,332
15    51748610    rs3736485    A    G    296.01    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=13.45;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:10,12:22:99:326,0,353
15    51749726    rs930920    A    C    200.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=18;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=11.14;ReadPosRankSum=-2.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:9,9:18:99:230,0,327
15    51750609    rs11630743    C    T    164.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.96;MQ0=0;MQRankSum=-1.171;QD=9.15;ReadPosRankSum=0.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:12,6:18:99:195,0,435
15    51750652    rs11630842    G    A    395.06    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.315;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.51;MQ0=0;MQRankSum=-0.62;QD=10.4;ReadPosRankSum=-2.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:24,14:38:99:425,0,767
15    51750846    rs7165887    G    A    486.72    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.977;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.34;MQ0=0;MQRankSum=-0.844;QD=13.91;ReadPosRankSum=0.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:19,16:35:99:517,0,581
15    51751091    rs111734926    TAGCAGC    T    474.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=91.4773;IndelType=D;MQ=49.99;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    1/1:5,9:14:27.09:517,27,0
15    51757621    rs1080394    G    A    648.22    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.41;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.947;QD=21.61;ReadPosRankSum=-2.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:11,19:30:99:678,0,306
15    51758345    rs35044869    CA    C    1870.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.0;HRun=10;HaplotypeScore=218.6697;IndelType=D;MQ=60.98;MQ0=0;QD=24.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    1/1:0,75:77:99:1912,223,0
15    51763249    rs11070851    C    G    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:2,2:4:69.18:72,0,69
15    51770456    rs11291027    AT    A    808.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=9;HaplotypeScore=81.9857;IndelType=D;MQ=60.98;MQ0=0;QD=24.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    1/1:2,31:33:93.05:851,93,0
15    51780722    rs17524750    C    T    557.68    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.242;DB;DP=36;Dels=0.0;FS=6.315;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.381;QD=15.49;ReadPosRankSum=1.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:17,19:36:99:588,0,547
15    51783820    rs10851500    T    C    1409.47    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=88;Dels=0.0;FS=3.582;HRun=2;HaplotypeScore=3.5979;MQ=59.48;MQ0=0;MQRankSum=-0.756;QD=16.02;ReadPosRankSum=-0.539;SNPEFF_AMINO_ACID_CHANGE=G1000;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51783775_51783944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449909    GT:AD:DP:GQ:PL    0/1:42,46:88:99:1439,0,1357
15    51783981    rs12101858    G    C    827.98    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.149;DB;DP=45;Dels=0.0;FS=1.965;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.115;QD=18.4;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:19,26:45:99:858,0,583
15    51791559    rs12102203    A    G    1657.07    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=130;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4103;MQ=59.29;MQ0=0;MQRankSum=0.691;QD=12.75;ReadPosRankSum=-1.186;SNPEFF_AMINO_ACID_CHANGE=S1288P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51790749_51792428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:68,62:130:99:1687,0,1983
15    51795172    rs12592889    G    A    877.62    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.77;DB;DP=55;Dels=0.0;FS=1.404;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.632;QD=15.96;ReadPosRankSum=-0.026;SNPEFF_AMINO_ACID_CHANGE=N941;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51795003_51795230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:26,29:55:99:908,0,813
15    51829812    rs17524906    G    A    1272.03    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=88;Dels=0.0;FS=4.055;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.768;QD=14.45;ReadPosRankSum=-0.134;SNPEFF_AMINO_ACID_CHANGE=T497M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51829685_51829956;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:43,45:88:99:1302,0,1205
15    51829995    rs12904173    T    C    489.23    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=29;Dels=0.0;FS=10.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.069;QD=16.87;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:14,15:29:99:519,0,405
15    51856190    rs66673629    GA    G    536.38    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=5.369;DB;DP=56;FS=0.0;HRun=7;HaplotypeScore=131.0968;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.367;QD=9.58;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:32,24:56:99:575,0,935
15    51857220    rs11070857    C    T    197.98    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=16.5;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:5,7:12:99:228,0,168
15    51868373    rs2414105    A    G    272.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=34;Dels=0.03;FS=4.419;HRun=0;HaplotypeScore=8.6986;MQ=49.37;MQ0=0;MQRankSum=0.387;QD=7.79;ReadPosRankSum=-0.317;SNPEFF_AMINO_ACID_CHANGE=Y31;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51868253_51868378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:20,12:34:99:303,0,367
15    51914662    rs2278990    G    A    39.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.94;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=P27;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_51914656_51914949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMXL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251076    GT:AD:DP:GQ:PL    0/1:2,3:5:63.22:70,0,63
15    51974910    rs2054166    A    T    221.61    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=20.15;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220478    GT:AD:DP:GQ:PL    0/1:4,7:11:99:252,0,101
15    51980311    rs2606145    G    A    36.72    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.34;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220478    GT:AD:DP:GQ:PL    0/1:2,3:5:48.79:67,0,49
15    51981291    rs2305716    C    T    279.20    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.847;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=17.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220478    GT:AD:DP:GQ:PL    0/1:7,9:16:99:309,0,244
15    52005713    rs2305720    C    T    94.02    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=8.55;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220478    GT:AD:DP:GQ:PL    0/1:7,4:11:99:124,0,219
15    52017345    rs2414116    A    G    495.25    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.719;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.324;QD=15.98;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220478    GT:AD:DP:GQ:PL    0/1:16,15:31:99:525,0,558
15    52066189    rs690638    A    C    574.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249700    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:608,48,0
15    52155314    rs2570251    T    C    60.51    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=5.5;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308580    GT:AD:DP:GQ:PL    0/1:7,4:11:90.51:91,0,266
15    52155395    rs12593708    A    G    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308580    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
15    52179679    rs2912186    T    A    1318.40    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.026;DB;DP=97;Dels=0.0;FS=6.711;HRun=0;HaplotypeScore=3.8547;MQ=59.76;MQ0=0;MQRankSum=-0.107;QD=13.59;ReadPosRankSum=0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308580    GT:AD:DP:GQ:PL    0/1:52,45:97:99:1348,0,1604
15    52185937    rs2959307    G    A    135.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=57.66;MQ0=0;MQRankSum=-0.876;QD=13.55;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308580    GT:AD:DP:GQ:PL    0/1:5,5:10:99:165,0,134
15    52185961    rs35113939    C    CA    119.50    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.532;DB;DP=24;FS=7.225;HRun=13;HaplotypeScore=131.3072;IndelType=I;MQ=58.52;MQ0=0;MQRankSum=-0.304;QD=4.98;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308580    GT:AD:DP:GQ:PL    0/1:14,8:24:99:159,0,166
15    52186158    rs2959285    A    C    483.45    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.747;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.491;QD=11.24;ReadPosRankSum=0.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308580    GT:AD:DP:GQ:PL    0/1:22,21:43:99:513,0,771
15    52193939    rs2554350    A    C    41.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308580    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:71,0,34
15    52194469    rs2554349    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308580    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:82,6,0
15    52239380    rs2414122    C    A    470.29    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.834;QD=18.81;ReadPosRankSum=1.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299601    GT:AD:DP:GQ:PL    0/1:11,14:25:99:500,0,382
15    52241822    rs2570275    A    G    36.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.48;MQ0=0;QD=18.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299601    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
15    52246665    rs2959293    G    A    1194.24    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=5.235;DB;DP=71;Dels=0.0;FS=2.69;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=-0.731;QD=16.82;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299601    GT:AD:DP:GQ:PL    0/1:29,42:71:99:1224,0,825
15    52250789    rs2593187    T    C    164.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=27.39;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299601    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:197,15,0
15    52252799    rs2258248    C    T    267.27    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.755;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.367;QD=14.07;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299601    GT:AD:DP:GQ:PL    0/1:10,9:19:99:297,0,308
15    52257874    rs2241503    A    G    569.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.01;QD=11.38;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299601    GT:AD:DP:GQ:PL    0/1:30,20:50:99:599,0,1015
15    52357227    rs150964739    C    T    608.07    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.604;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9557;MQ=58.69;MQ0=0;MQRankSum=0.054;QD=17.88;ReadPosRankSum=-0.162;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261845    GT:AD:DP:GQ:PL    0/1:12,22:34:99:638,0,336
15    52433249    rs41277708    C    T    131.63    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=9.4;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261837    GT:AD:DP:GQ:PL    0/1:9,5:14:99:162,0,332
15    52486335    rs59434591    G    A    275.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:308,24,0
15    52487523    rs3751604    T    A    1089.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1122,84,0
15    52504142    rs2278295    T    C    901    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,31:31:72.23:934,72,0
15    52505563    rs3751608    C    T    153.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
15    52515523    rs4405491    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    52515678    rs4405492    G    T    1168.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1201,87,0
15    52516942    rs11070886    C    A    254.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443683    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
15    52528080    rs8031357    G    A    53.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,3:3:8.98:86,9,0
15    52531941    rs11635028    A    G    1269.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_AMINO_ACID_CHANGE=L898;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52531930_52532076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1303,96,0
15    52534344    rs3751631    G    A    7809.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=231;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.5753;MQ=59.8;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=R819;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52534245_52534410;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,230:231:99:7809,584,0
15    52539673    rs10163109    C    T    2039.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.57;MQ0=0;QD=34.57;SNPEFF_AMINO_ACID_CHANGE=R621;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52539655_52539789;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2072,156,0
15    52548784    rs71425737    A    ACGCGCGCGCG    1855.67    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.677;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=449.8336;IndelType=I;MQ=43.0;MQ0=0;MQRankSum=-2.099;QD=44.18;ReadPosRankSum=0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541028    GT:AD:DP:GQ:PL    0/1:30,9:41:99:1895,0,749
15    52553007    rs4497629    C    G    784.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541028    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:818,63,0
15    52553453    rs12903919    C    G    58.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=11.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:89,0,69
15    52556429    rs4776032    A    G    821.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.43;SNPEFF_AMINO_ACID_CHANGE=M235T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52556387_52556493;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541028    GT:AD:DP:GQ:PL    1/1:0,27:27:63.21:855,63,0
15    52567631    rs11854890    G    A    34.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.74;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    0/1:4,2:6:64.44:64,0,111
15    52572053    rs75976000    C    G    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261839    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:74,0,31
15    52640990    rs11386962    T    TA    451.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DB;DP=39;FS=3.979;HRun=13;HaplotypeScore=251.124;IndelType=I;MQ=55.35;MQ0=0;MQRankSum=-1.214;QD=11.57;ReadPosRankSum=0.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    1/1:16,22:39:39.39:493,39,0
15    52641120    .    T    TAA    403.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.8;DP=16;FS=0.0;HRun=4;HaplotypeScore=38.8657;IndelType=I;MQ=50.65;MQ0=0;MQRankSum=0.667;QD=25.23;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    0/1:8,8:16:99:443,0,158
15    52664408    rs11637651    G    A    902.09    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.513;DB;DP=73;Dels=0.0;FS=3.465;HRun=1;HaplotypeScore=0.7887;MQ=58.85;MQ0=0;MQRankSum=-0.061;QD=12.36;ReadPosRankSum=-0.127;SNPEFF_AMINO_ACID_CHANGE=I444;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52664321_52664560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399229    GT:AD:DP:GQ:PL    0/1:38,35:73:99:932,0,1165
15    52667552    rs2414145    G    A    1624.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6545;MQ=59.03;MQ0=0;QD=33.85;SNPEFF_AMINO_ACID_CHANGE=I376;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52667501_52667657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399229    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1658,120,0
15    52668822    rs1009157    G    A    78.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.07;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    0/1:2,4:6:69.41:108,0,69
15    52671784    rs2242058    C    T    430.12    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.168;DB;DP=36;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.111;QD=11.95;ReadPosRankSum=-1.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    0/1:20,16:36:99:460,0,702
15    52672284    rs4238391    T    C    135.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:169,15,0
15    52675261    rs4774621    T    C    581.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469611    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:615,48,0
15    52676207    rs2242059    G    A    156.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469611    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:189,15,0
15    52681573    rs1724623    A    G    1073.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9134;MQ=58.92;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    1/1:0,39:39:96.26:1106,96,0
15    52684004    rs1669872    C    A    207.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:240,21,0
15    52689526    rs2924130    T    C    1127.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.92;SNPEFF_AMINO_ACID_CHANGE=T27;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52689398_52689663;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546028    GT:AD:DP:GQ:PL    1/1:0,39:39:93.25:1161,93,0
15    52689631    rs1724577    T    G    1567.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=E362D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52689398_52689663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1601,123,0
15    52689772    rs1669875    T    C    155.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.39;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    0/1:2,6:8:59.58:185,0,60
15    52720908    rs1526169    G    T    96.43    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356338    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,176
15    52897478    rs2414163    T    C    1426.03    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.064;DB;DP=95;Dels=0.0;FS=3.548;HRun=0;HaplotypeScore=1.6647;MQ=60.0;MQ0=0;MQRankSum=-1.123;QD=15.01;ReadPosRankSum=-0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1370;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261844    GT:AD:DP:GQ:PL    0/1:44,51:95:99:1456,0,1434
15    52901433    rs12915981    C    T    1603.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.993;DB;DP=104;Dels=0.0;FS=3.657;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.491;QD=15.42;ReadPosRankSum=1.336;SNPEFF_AMINO_ACID_CHANGE=V559I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52900765_52902580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1370;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534964    GT:AD:DP:GQ:PL    0/1:52,52:104:99:1633,0,1706
15    52901638    rs3751614    T    C    2715.26    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.353;DB;DP=208;Dels=0.0;FS=6.846;HRun=0;HaplotypeScore=5.3604;MQ=59.74;MQ0=0;MQRankSum=0.839;QD=12.99;ReadPosRankSum=-1.258;SNPEFF_AMINO_ACID_CHANGE=Q490;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52900765_52902580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1370;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534964    GT:AD:DP:GQ:PL    0/1:111,97:208:99:2745,0,3437
15    52901977    rs2414166    G    A    2482.32    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=2.33;DB;DP=166;Dels=0.0;FS=8.196;HRun=0;HaplotypeScore=1.5767;MQ=59.58;MQ0=0;MQRankSum=0.263;QD=14.95;ReadPosRankSum=0.168;SNPEFF_AMINO_ACID_CHANGE=A377;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52900765_52902580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1370;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534964    GT:AD:DP:GQ:PL    0/1:78,88:166:99:2512,0,2338
15    52903749    rs8036671    T    C    948.39    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=75;Dels=0.0;FS=2.996;HRun=0;HaplotypeScore=0.8321;MQ=59.69;MQ0=0;MQRankSum=0.595;QD=12.65;ReadPosRankSum=0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1370;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261844    GT:AD:DP:GQ:PL    0/1:43,32:75:99:978,0,1400
15    52903772    rs8036680    T    C    1377.48    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.128;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.75;MQ0=0;MQRankSum=-0.827;QD=14.81;ReadPosRankSum=-1.089;SNPEFF_AMINO_ACID_CHANGE=Q134R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_52903772_52903974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1370;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534964    GT:AD:DP:GQ:PL    0/1:49,44:93:99:1407,0,1587
15    52904046    rs4776063    C    A    1108.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1370;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261844    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1141,84,0
15    53178012    rs2414185    T    C    3419.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.55;MQ0=0;QD=36.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-209K10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477347    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3420,259,0
15    53230662    rs12050508    C    T    3085.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3118,232,0
15    53905729    rs62005937    T    C    127.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
15    53905779    rs35292476    C    T    885.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:918,69,0
15    53905820    rs34829468    GA    G    1259    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=10;HaplotypeScore=239.7961;IndelType=D;MQ=59.95;MQ0=0;QD=24.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:2,50:52:99:1301,150,0
15    53907679    rs16966318    T    C    609.35    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=2.065;DB;DP=54;Dels=0.0;FS=6.397;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.091;QD=11.28;ReadPosRankSum=1.34;SNPEFF_AMINO_ACID_CHANGE=L908;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_53907623_53908440;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:35,19:54:99:639,0,1164
15    53907906    rs16966320    A    C    1716.70    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=2.12;DB;DP=101;Dels=0.0;FS=2.855;HRun=0;HaplotypeScore=1.6634;MQ=59.63;MQ0=0;MQRankSum=-0.134;QD=17.0;ReadPosRankSum=0.277;SNPEFF_AMINO_ACID_CHANGE=S833A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_53907623_53908440;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:44,57:101:99:1747,0,1426
15    53908062    rs60404950    T    C    1978.73    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=3.117;DB;DP=141;Dels=0.0;FS=5.386;HRun=0;HaplotypeScore=5.3706;MQ=58.85;MQ0=0;MQRankSum=-0.984;QD=14.03;ReadPosRankSum=-0.984;SNPEFF_AMINO_ACID_CHANGE=K781E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_53907623_53908440;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:73,68:141:99:2009,0,2311
15    53908516    .    AT    A    124.68    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DP=14;FS=0.0;HRun=5;HaplotypeScore=36.6676;IndelType=D;MQ=59.13;MQ0=0;MQRankSum=-1.2;QD=8.91;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:8,6:14:99:164,0,241
15    53994493    rs6416452    A    G    978.86    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.687;DB;DP=85;Dels=0.0;FS=5.137;HRun=2;HaplotypeScore=2.8522;MQ=58.96;MQ0=0;MQRankSum=0.758;QD=11.52;ReadPosRankSum=1.511;SNPEFF_AMINO_ACID_CHANGE=Y469;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_53994331_53994551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:50,35:85:99:1009,0,1539
15    53997089    rs578595    C    A    463.12    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=58.39;MQ0=0;MQRankSum=-0.22;QD=15.97;ReadPosRankSum=0.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:12,17:29:99:493,0,400
15    53998314    rs690235    G    T    639.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:673,51,0
15    54002909    rs553054    T    C    131.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
15    54002939    rs552960    T    C    73.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.53;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,141
15    54003091    rs551225    G    A    429.16    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.207;DB;DP=41;Dels=0.0;FS=4.786;HRun=1;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;MQRankSum=0.014;QD=10.47;ReadPosRankSum=-0.373;SNPEFF_AMINO_ACID_CHANGE=P306L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_54003054_54003150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:24,17:41:99:459,0,709
15    54005244    rs2459380    T    A    82.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.67;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:113,0,29
15    54007118    rs690526    T    G    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
15    54008795    rs690337    T    C    1427.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8835;MQ=56.75;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1460,117,0
15    54008845    rs690346    T    C    1704.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.18;MQ0=0;QD=28.9;SNPEFF_AMINO_ACID_CHANGE=M100V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_54008804_54008882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1738,132,0
15    54008889    rs34828731    GA    G    596.36    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=46;FS=1.238;HRun=2;HaplotypeScore=251.4464;IndelType=D;MQ=57.52;MQ0=0;MQRankSum=-0.012;QD=12.96;ReadPosRankSum=-0.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    0/1:26,20:46:99:635,0,940
15    54025013    rs690001    A    G    38.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360509    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:69,6,0
15    54306925    rs12437941    G    A    2415.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_AMINO_ACID_CHANGE=G609S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_54305101_54308083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2448,187,0
15    54529560    rs7183052    A    T    113.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=18.85;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:2,4:6:65.40:143,0,65
15    54529629    rs7162346    T    C    262.71    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=18.76;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:4,10:14:99:293,0,122
15    54529997    rs7183952    A    G    105.41    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.71;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:5,4:9:99:135,0,180
15    54556259    rs12917364    A    G    114.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=7.6;ReadPosRankSum=-0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:10,5:15:99:144,0,377
15    54586473    rs11630766    T    A    108.96    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.79;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:139,0,26
15    54586504    rs11635437    A    G    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
15    54592355    rs7164993    T    C    304.48    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.254;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.029;QD=12.69;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:14,10:24:99:334,0,443
15    54613936    rs12917191    A    C    34.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.99;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:3,2:5:64.96:65,0,104
15    54624313    rs11856987    T    A    892.28    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.898;DB;DP=75;Dels=0.0;FS=3.311;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=11.9;ReadPosRankSum=0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:42,33:75:99:922,0,1248
15    54685448    rs73417774    G    A    679.72    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.246;DB;DP=45;Dels=0.0;FS=2.444;HRun=0;HaplotypeScore=0.9867;MQ=59.49;MQ0=0;MQRankSum=0.332;QD=15.1;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:20,25:45:99:710,0,597
15    54685463    rs489526    G    A    1560.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1593,117,0
15    54792428    rs8025195    A    G    272.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.096;QD=12.97;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:12,9:21:99:302,0,363
15    54841696    rs10468008    G    A    172.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.663;QD=12.35;ReadPosRankSum=0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:7,7:14:99:203,0,246
15    54841874    rs9302181    A    G    1954.93    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=137;Dels=0.0;FS=3.169;HRun=0;HaplotypeScore=1.9784;MQ=59.86;MQ0=0;MQRankSum=0.159;QD=14.27;ReadPosRankSum=-0.002;SNPEFF_AMINO_ACID_CHANGE=Q1952;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_54841833_54841889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537900    GT:AD:DP:GQ:PL    0/1:68,69:137:99:1985,0,1962
15    54847509    rs8039515    G    T    174.28    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.174;QD=11.62;ReadPosRankSum=-0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:8,7:15:99:204,0,288
15    54847677    rs11639005    C    T    684.97    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.86;DB;DP=63;Dels=0.0;FS=2.304;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.777;QD=10.87;ReadPosRankSum=-0.064;SNPEFF_AMINO_ACID_CHANGE=C1973;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_54847630_54847710;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537900    GT:AD:DP:GQ:PL    0/1:37,26:63:99:715,0,1069
15    54847786    rs11639014    A    G    210.62    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=13.16;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:9,7:16:99:241,0,330
15    54914716    rs2681964    C    T    742.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=39.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:776,57,0
15    54915830    rs2414331    G    C    73.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
15    54915975    rs2414332    A    T    2158.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.27;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2191,169,0
15    54918755    rs28704578    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    54918863    rs11852668    C    T    499.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:532,39,0
15    54918911    rs11856235    T    C    958.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:992,75,0
15    54918943    rs11852743    G    A    1773.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1807,135,0
15    54919047    rs1520411    A    G    4762.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;DB;DP=129;Dels=0.0;FS=2.672;HRun=1;HaplotypeScore=2.3919;MQ=60.0;MQ0=0;MQRankSum=-0.874;QD=36.92;ReadPosRankSum=-2.008;SNPEFF_AMINO_ACID_CHANGE=R2125;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_54919026_54920806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537900    GT:AD:DP:GQ:PL    1/1:2,126:129:99:4762,278,0
15    54919411    rs1053864    C    G    365.16    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.631;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5781;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=15.88;ReadPosRankSum=1.446;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260323    GT:AD:DP:GQ:PL    0/1:11,12:23:99:395,0,356
15    55619990    .    A    C    50.38    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.67;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.6;MQ0=0;MQRankSum=-2.382;QD=2.96;ReadPosRankSum=2.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164305    GT:AD:DP:GQ:PL    0/1:3,14:17:80.38:80,0,102
15    55647227    rs8039224    G    C    1571.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.48;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310958    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1605,120,0
15    55647492    rs8043415    C    T    3622.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=33.85;SNPEFF_AMINO_ACID_CHANGE=S314;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_55647484_55647845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539642    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3622,271,0
15    55647786    rs11732    A    G    387.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425574    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:420,33,0
15    55653031    rs501231    A    G    1715.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=L314;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_55647438_55653142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310958    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1748,138,0
15    55653181    rs8042642    A    G    444    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310958    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:477,36,0
15    55664110    rs117236526    G    C    1071.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=A196G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_55663991_55664242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310958    GT:AD:DP:GQ:PL    1/1:0,30:30:84.26:1104,84,0
15    55664220    rs3203152    G    A    1200.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=D159;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_55663991_55664242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310958    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1233,90,0
15    55665089    rs8041885    T    C    1113.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420792    GT:AD:DP:GQ:PL    1/1:0,28:28:84.27:1147,84,0
15    55665313    rs8041044    C    A    667.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420792    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:700,51,0
15    55669392    rs6493781    T    C    773.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310958    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:806,60,0
15    55710369    rs6493785    T    A    965.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=27.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380679    GT:AD:DP:GQ:PL    1/1:0,35:35:81.25:998,81,0
15    55722882    rs57809907    C    A    2546.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=E417*;SNPEFF_CODON_CHANGE=Gaa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_15_55722506_55722977;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000321149    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2579,190,0
15    55789793    rs112865941    TA    T    150.48    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=23;FS=9.7;HRun=12;HaplotypeScore=91.4076;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=1.707;QD=6.54;ReadPosRankSum=1.773;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321149    GT:AD:DP:GQ:PL    0/1:12,11:23:99:190,0,265
15    55790298    rs28369251    A    G    131.82    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=10.99;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321149    GT:AD:DP:GQ:PL    0/1:7,5:12:99:162,0,215
15    55790310    rs3743204    G    T    220.92    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.794;QD=14.73;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321149    GT:AD:DP:GQ:PL    0/1:8,7:15:99:251,0,196
15    55790530    rs3743205    C    T    398.33    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=1.179;QD=14.75;ReadPosRankSum=-0.769;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_15_55790405_55790782;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYX1C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321149    GT:AD:DP:GQ:PL    0/1:14,13:27:99:428,0,308
15    55840995    rs2617227    A    G    347.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302000    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:381,30,0
15    55841032    rs12917202    A    G    439.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302000    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:472,39,0
15    55881107    rs1992237    C    T    311.68    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.782;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.88;QD=14.84;ReadPosRankSum=1.021;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401688    GT:AD:DP:GQ:PL    0/1:10,11:21:99:342,0,343
15    55881111    rs1992236    A    G    277.23    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=14.59;ReadPosRankSum=1.674;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401688    GT:AD:DP:GQ:PL    0/1:10,9:19:99:307,0,367
15    55919139    rs12591646    T    G    107.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.39;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,141
15    55921013    rs7165971    T    C    739.66    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=1.304;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-1.285;QD=14.79;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:27,23:50:99:770,0,809
15    55933199    rs1550326    G    T    38.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.7;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:3,2:5:68.47:68,0,108
15    55965521    rs28556884    T    C    337.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=22.49;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:5,10:15:99:367,0,158
15    55965971    rs62043869    T    C    137.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.453;QD=13.75;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,160
15    55967916    rs2118781    T    C    280.61    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=33;Dels=0.0;FS=8.661;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.682;QD=8.5;ReadPosRankSum=0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:20,13:33:99:311,0,725
15    55967975    rs77798634    C    G    161.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.75;MQ0=0;MQRankSum=-1.12;QD=10.79;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:9,6:15:99:192,0,320
15    55970041    rs11854213    A    G    383.81    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.174;DB;DP=61;Dels=0.0;FS=1.083;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.39;QD=6.29;ReadPosRankSum=-0.008;SNPEFF_AMINO_ACID_CHANGE=N445;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_55969995_55970242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:41,20:61:99:414,0,1314
15    55972515    rs576456    A    G    275.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:308,24,0
15    55972797    rs16976466    T    C    929.03    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.125;DB;DP=65;Dels=0.0;FS=1.109;HRun=0;HaplotypeScore=1.5783;MQ=58.57;MQ0=0;MQRankSum=-0.033;QD=14.29;ReadPosRankSum=2.5;SNPEFF_AMINO_ACID_CHANGE=T236A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_55972689_55972826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:33,32:65:99:959,0,1147
15    55974746    rs550226    A    T    241.03    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.909;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.768;QD=17.22;ReadPosRankSum=-1.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389286    GT:AD:DP:GQ:PL    0/1:4,10:14:99:271,0,106
15    56122664    rs12910830    T    C    1973.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2006,156,0
15    56125135    rs8024944    C    A    1271.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,32:32:96.32:1304,96,0
15    56125182    rs8026172    T    A    1750.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1784,150,0
15    56130286    rs11071227    A    T    631.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:665,48,0
15    56130909    rs8028559    A    G    176.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
15    56139153    rs2288346    T    C    970.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=58.45;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,30:30:75.20:1003,75,0
15    56140995    rs12232351    T    A    2022.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2056,153,0
15    56152598    rs4774228    A    G    1822.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514893    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1856,144,0
15    56152729    rs2303579    T    C    2125.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=36.64;SNPEFF_AMINO_ACID_CHANGE=N279S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_56152605_56152772;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435532    GT:AD:DP:GQ:PL    1/1:0,57:58:99:2158,162,0
15    56152872    rs2303580    C    T    3332.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6545;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_AMINO_ACID_CHANGE=R260Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_56152859_56152976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435532    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3332,247,0
15    56161609    rs1912401    G    A    115.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
15    56161919    rs1912402    C    T    1591.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1625,120,0
15    56164876    rs1912407    T    C    113.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338963    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
15    56243792    rs11478553    TA    T    76.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DB;DP=34;FS=0.0;HRun=17;HaplotypeScore=261.277;IndelType=D;MQ=54.51;MQ0=0;MQRankSum=1.004;QD=2.26;ReadPosRankSum=0.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435532    GT:AD:DP:GQ:PL    1/1:13,11:34:7.70:118,8,0
15    56386577    rs7170589    T    G    5193.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4187;MQ=59.54;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=N1020H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_56385831_56388818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422057    GT:AD:DP:GQ:PL    1/1:0,148:149:99:5193,388,0
15    56387931    rs11071247    C    T    5906.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=59.73;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=Q568;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_56385831_56388818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422057    GT:AD:DP:GQ:PL    1/1:0,172:172:99:5907,454,0
15    56390616    rs748344    T    G    297.35    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.366;QD=10.25;ReadPosRankSum=1.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317318    GT:AD:DP:GQ:PL    0/1:19,10:29:99:327,0,589
15    56394295    rs17238601    T    C    565.10    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.435;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.51;MQ0=0;MQRankSum=-1.389;QD=14.87;ReadPosRankSum=-1.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317318    GT:AD:DP:GQ:PL    0/1:18,20:38:99:595,0,619
15    56435375    rs8025379    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317318    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    56657581    rs2682033    A    C    242.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.27;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352903    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
15    56680865    rs16976890    G    A    109.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.63;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352903    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,129
15    56680944    rs1477589    T    C    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352903    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
15    56686239    rs34544252    A    T    142.39    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=10.95;ReadPosRankSum=1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352903    GT:AD:DP:GQ:PL    0/1:8,5:13:99:172,0,291
15    56719797    rs795785    G    T    1566.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.46;MQ0=0;QD=36.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260453    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1600,120,0
15    56720715    rs1554410    T    G    473.87    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.655;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.068;QD=18.95;ReadPosRankSum=1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260453    GT:AD:DP:GQ:PL    0/1:11,14:25:99:504,0,352
15    56721264    rs795787    G    A    334.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352903    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:368,27,0
15    56721406    rs808730    C    T    802.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260453    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:835,63,0
15    56726212    rs72742658    T    C    359.04    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.373;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=17.1;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260453    GT:AD:DP:GQ:PL    0/1:10,11:21:99:389,0,336
15    56736208    rs795793    T    C    142.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260453    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:176,15,0
15    56757145    .    T    C    3005.98    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.959;DP=231;DS;Dels=0.0;FS=2.356;HRun=0;HaplotypeScore=0.734;MQ=50.86;MQ0=0;MQRankSum=0.482;QD=13.01;ReadPosRankSum=1.497;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260453    GT:AD:DP:GQ:PL    0/1:117,114:231:99:3036,0,3110
15    56923536    rs3803457    A    G    130.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260435    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
15    56923714    rs8043381    G    A    2346.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=D961;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_56922379_56924320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455329    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2380,175,0
15    56923895    rs61741526    C    A    753.57    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.288;DB;DP=64;Dels=0.0;FS=8.969;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.487;QD=11.77;ReadPosRankSum=0.677;SNPEFF_AMINO_ACID_CHANGE=G901V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_56922379_56924320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455329    GT:AD:DP:GQ:PL    0/1:37,27:64:99:784,0,1256
15    56946296    rs8028457    C    A    1598.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=58.97;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396245    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1632,129,0
15    56946980    rs12911381    T    G    302.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=P410;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_56946944_56947040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396245    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:335,27,0
15    56961272    rs12911191    T    A    368.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260435    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:401,33,0
15    56974304    rs11638707    T    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260435    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
15    56981703    rs1871861    T    A    338.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260435    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:371,33,0
15    57212228    .    TTTTG    T    182.84    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DP=16;FS=0.0;HRun=0;HaplotypeScore=91.1995;IndelType=D;MQ=57.76;MQ0=0;MQRankSum=0.729;QD=11.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:11,5:16:99:222,0,226
15    57258531    rs12901780    T    A    834.59    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.992;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=59.44;MQ0=0;MQRankSum=-0.666;QD=20.36;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:14,27:41:99:865,0,466
15    57258736    rs12900986    C    G    636.85    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.63;DB;DP=48;Dels=0.0;FS=2.147;HRun=1;HaplotypeScore=1.3123;MQ=59.13;MQ0=0;MQRankSum=0.268;QD=13.27;ReadPosRankSum=-1.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:23,25:48:99:667,0,793
15    57258866    rs1628067    C    T    108.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.52;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,136
15    57458784    rs3794617    C    T    199.01    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.013;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.102;QD=9.05;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:14,8:22:99:229,0,504
15    57484613    rs12914481    G    A    361.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.076;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.94;MQ0=0;MQRankSum=0.076;QD=17.23;ReadPosRankSum=-0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:9,12:21:99:392,0,305
15    57523542    rs1037958    A    G    235.75    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.914;QD=13.87;ReadPosRankSum=0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:9,8:17:99:266,0,319
15    57524756    rs2248620    G    A    321.90    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.419;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.321;QD=11.92;ReadPosRankSum=0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:16,11:27:99:352,0,568
15    57524857    rs2290938    T    C    364.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.068;DB;DP=24;Dels=0.0;FS=1.641;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.26;QD=15.2;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:12,12:24:99:395,0,360
15    57555523    rs7182038    C    A    479.04    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.123;DB;DP=27;Dels=0.0;FS=2.049;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.344;QD=17.74;ReadPosRankSum=0.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267811    GT:AD:DP:GQ:PL    0/1:11,16:27:99:509,0,333
15    57731335    rs1280395    A    C    2620.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_AMINO_ACID_CHANGE=T380P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_57730183_57731799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2654,199,0
15    57731573    rs7182648    C    T    488.59    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.977;QD=16.29;ReadPosRankSum=-0.021;SNPEFF_AMINO_ACID_CHANGE=S459F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_57730183_57731799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    0/1:14,16:30:99:519,0,447
15    57731728    rs1280396    A    G    1905.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.17;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=T511A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_57730183_57731799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1938,144,0
15    57743508    rs1706353    A    G    174.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:208,18,0
15    57743933    rs1280406    A    G    123.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
15    57744311    rs1018269    T    A    1482.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1515,111,0
15    57744582    rs1018268    A    G    318.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:351,27,0
15    57817050    rs10518925    G    A    105.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.55;QD=15.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    0/1:3,4:7:99:135,0,106
15    57836493    rs1625458    G    A    62.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=10.42;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    0/1:3,3:6:92.53:93,0,97
15    57836823    rs8029295    G    A    174.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
15    57838258    rs2635390    T    C    111.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.098;QD=11.19;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000281282    GT:AD:DP:GQ:PL    0/1:5,5:10:99:142,0,143
15    57896311    rs7163748    T    G    260.95    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.664;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.07;MQ0=0;MQRankSum=-0.205;QD=10.44;ReadPosRankSum=0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    0/1:14,10:24:99:291,0,438
15    57896366    rs2172611    A    T    1079.92    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.992;DB;DP=54;Dels=0.0;FS=4.021;HRun=1;HaplotypeScore=1.7886;MQ=59.57;MQ0=0;MQRankSum=-0.337;QD=20.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    0/1:21,33:54:99:1110,0,711
15    57896658    rs2453091    C    A    345.98    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.463;QD=14.42;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    0/1:11,13:24:99:376,0,328
15    57910164    rs937254    G    A    271.32    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.873;DB;DP=22;Dels=0.0;FS=3.882;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=12.33;ReadPosRankSum=-0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    0/1:13,9:22:99:301,0,401
15    57910444    rs935548    A    G    1162.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    1/1:0,37:37:93.29:1196,93,0
15    57918069    rs2069133    A    G    449.81    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=38;Dels=0.0;FS=1.512;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.881;QD=11.84;ReadPosRankSum=-2.378;SNPEFF_AMINO_ACID_CHANGE=A137;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_57917977_57918090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380561    GT:AD:DP:GQ:PL    0/1:21,17:38:99:480,0,668
15    57918090    rs2958059    A    G    1098.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=Q144;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_57917977_57918090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380561    GT:AD:DP:GQ:PL    1/1:0,34:34:87.27:1131,87,0
15    57924586    rs2733593    T    A    997.79    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=75;Dels=0.0;FS=2.174;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=1.072;QD=13.3;ReadPosRankSum=-0.671;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    0/1:40,35:75:99:1028,0,1332
15    57953564    rs986868    C    T    232.53    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=23.25;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    0/1:3,7:10:91.13:263,0,91
15    57967219    rs1991252    T    C    1179    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.03;SNPEFF_AMINO_ACID_CHANGE=T350;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_57967166_57967266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380560    GT:AD:DP:GQ:PL    1/1:0,38:38:93.28:1212,93,0
15    57967285    rs5812908    AT    A    376.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=11;HaplotypeScore=78.3731;IndelType=D;MQ=57.66;MQ0=0;QD=18.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    1/1:3,17:20:50.93:419,51,0
15    57976523    rs6493944    A    G    1131.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    1/1:0,31:31:90.25:1164,90,0
15    57976583    rs2554032    A    C    3088.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9648;MQ=59.71;MQ0=0;QD=38.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267853    GT:AD:DP:GQ:PL    1/1:0,80:80:99:3122,232,0
15    58000981    rs1062707    C    T    1408.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=37.06;SNPEFF_AMINO_ACID_CHANGE=A61;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58000912_58001556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRINL1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299638    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1441,105,0
15    58285388    rs4646607    C    A    173.43    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=15.77;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249750    GT:AD:DP:GQ:PL    0/1:5,6:11:99:203,0,176
15    58303165    rs4646589    C    T    31.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.85;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249750    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:61,0,70
15    58465171    rs2292712    G    A    951.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219919    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:985,75,0
15    58465483    rs2292713    C    T    775.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219919    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:808,60,0
15    58467446    rs1663244    G    A    209.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219919    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
15    58471368    rs2249783    C    T    1503.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=I179;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58471327_58471544;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219919    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1537,117,0
15    58476092    rs78341359    G    GA    1259.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=5;HaplotypeScore=74.5886;IndelType=I;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219919    GT:AD:DP:GQ:PL    1/1:1,33:34:99:1302,99,0
15    58476281    rs1867380    A    G    1912.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_AMINO_ACID_CHANGE=T279A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58476160_58478110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219919    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1946,144,0
15    58723597    rs36041167    G    A    490.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.022;DB;DP=30;Dels=0.0;FS=1.987;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=16.35;ReadPosRankSum=-0.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356113    GT:AD:DP:GQ:PL    0/1:10,20:30:99:520,0,330
15    58723675    rs1800588    C    T    510.61    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.942;DB;DP=47;Dels=0.0;FS=1.171;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.413;QD=10.86;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356113    GT:AD:DP:GQ:PL    0/1:28,19:47:99:541,0,814
15    58834539    rs7177852    A    C    318.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
15    58834741    rs690    G    T    2591.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=V155;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58834733_58834850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2624,199,0
15    58837910    rs2414592    T    C    768.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:802,60,0
15    58838010    rs6083    A    G    619.06    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=46;Dels=0.0;FS=11.612;HRun=0;HaplotypeScore=0.9789;MQ=59.5;MQ0=0;MQRankSum=0.575;QD=13.46;ReadPosRankSum=0.669;SNPEFF_AMINO_ACID_CHANGE=N154S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58837941_58838174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433326    GT:AD:DP:GQ:PL    0/1:24,22:46:99:649,0,643
15    58838038    rs6084    C    G    464.47    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=48;Dels=0.0;FS=4.224;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=1.272;QD=9.68;ReadPosRankSum=0.957;SNPEFF_AMINO_ACID_CHANGE=T163;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58837941_58838174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433326    GT:AD:DP:GQ:PL    0/1:28,19:48:99:494,0,815
15    58840450    rs1007543    A    C    1046.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1079,81,0
15    58840882    rs1973025    G    C    64.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
15    58840922    rs1973026    A    T    86.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
15    58840930    rs1973027    T    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
15    58853079    rs3829462    C    A    1235.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.23;MQ0=0;QD=34.32;SNPEFF_AMINO_ACID_CHANGE=F295L;SNPEFF_CODON_CHANGE=ttC/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58853063_58853180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433326    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1269,99,0
15    58853109    rs3829461    A    G    1648.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=56.73;MQ0=0;QD=25.37;SNPEFF_AMINO_ACID_CHANGE=T305;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58853063_58853180;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433326    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1682,135,0
15    58853212    rs71964604    GAC    G    1928.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=375.8589;IndelType=D;MQ=54.38;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:3,49:52:99:1970,145,0
15    58853307    rs4774305    C    G    510.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:544,39,0
15    58853363    rs1869129    C    T    171.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
15    58856086    rs6494019    C    T    72.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299022    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:104,9,0
15    58860963    rs6074    C    A    189.25    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.071;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.53;MQ0=0;MQRankSum=-0.211;QD=9.96;ReadPosRankSum=-1.648;SNPEFF_AMINO_ACID_CHANGE=T418;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_58860915_58861151;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433326    GT:AD:DP:GQ:PL    0/1:12,7:19:99:219,0,312
15    58891949    rs35772938    GA    G    328.13    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=3.321;DB;DP=62;FS=0.0;HRun=12;HaplotypeScore=212.1098;IndelType=D;MQ=58.12;MQ0=0;MQRankSum=1.645;QD=5.29;ReadPosRankSum=1.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:39,22:62:99:367,0,631
15    58903083    rs2305421    A    G    215.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.683;QD=13.47;ReadPosRankSum=1.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462061    GT:AD:DP:GQ:PL    0/1:8,8:16:99:246,0,277
15    58904237    rs8039791    C    T    291.50    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.181;QD=16.19;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:7,11:18:99:321,0,241
15    58932932    rs7165402    T    C    267.64    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=13.38;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:11,9:20:99:298,0,393
15    58935986    rs2303532    T    C    122.05    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.709;QD=8.14;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:9,6:15:99:152,0,321
15    58938436    rs12912286    T    C    369.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.812;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.441;QD=13.21;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:16,12:28:99:400,0,496
15    58983425    rs7161889    G    C    1917.96    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=4.526;DB;DP=121;Dels=0.0;FS=1.478;HRun=1;HaplotypeScore=3.762;MQ=59.62;MQ0=0;MQRankSum=1.257;QD=15.85;ReadPosRankSum=0.728;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091046.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331871    GT:AD:DP:GQ:PL    0/1:57,63:121:99:1948,0,1622
15    58983588    rs7163162    T    A    1304.51    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=99;Dels=0.0;FS=0.771;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.286;QD=13.18;ReadPosRankSum=1.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091046.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331871    GT:AD:DP:GQ:PL    0/1:53,46:99:99:1334,0,1640
15    58984394    rs12437998    G    C    1244.37    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.748;DB;DP=84;Dels=0.0;FS=0.954;HRun=0;HaplotypeScore=2.8146;MQ=59.73;MQ0=0;MQRankSum=0.126;QD=14.81;ReadPosRankSum=1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:47,37:84:99:1274,0,1535
15    58984407    rs12437955    C    T    1273.77    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.399;DB;DP=101;Dels=0.0;FS=0.802;HRun=0;HaplotypeScore=4.3203;MQ=59.77;MQ0=0;MQRankSum=0.677;QD=12.61;ReadPosRankSum=-0.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:57,44:101:99:1304,0,1747
15    58985164    rs4774310    T    G    2119.58    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.329;DB;DP=143;Dels=0.0;FS=2.135;HRun=3;HaplotypeScore=0.734;MQ=59.84;MQ0=0;MQRankSum=-2.362;QD=14.82;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:68,75:143:99:2150,0,1904
15    59010111    rs6494034    C    G    1021.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.289;DB;DP=81;Dels=0.0;FS=13.894;HRun=1;HaplotypeScore=0.9983;MQ=59.43;MQ0=0;MQRankSum=0.583;QD=12.61;ReadPosRankSum=-2.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260408    GT:AD:DP:GQ:PL    0/1:40,40:81:99:1052,0,1205
15    59080203    rs7169205    A    G    1566.59    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.334;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.76;MQ0=0;MQRankSum=-2.501;QD=16.15;ReadPosRankSum=0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM63B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316848    GT:AD:DP:GQ:PL    0/1:40,57:97:99:1597,0,1224
15    59113853    rs147930380    T    C    83.73    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=11.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM63B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316848    GT:AD:DP:GQ:PL    0/1:3,4:7:98.08:114,0,98
15    59144199    rs16940850    A    G    464.69    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=28;Dels=0.0;FS=2.649;HRun=1;HaplotypeScore=1.6809;MQ=57.65;MQ0=0;MQRankSum=0.188;QD=16.6;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM63B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316848    GT:AD:DP:GQ:PL    0/1:11,17:28:99:495,0,303
15    59172382    rs34042545    T    TG    229.21    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=19.8325;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=-0.296;QD=22.92;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380516    GT:AD:DP:GQ:PL    0/1:3,7:10:81.54:268,0,82
15    59185929    rs4238332    T    C    970.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473359    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:1003,72,0
15    59190930    rs10518991    C    T    269    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=26;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.525;QD=10.35;ReadPosRankSum=0.804;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249736    GT:AD:DP:GQ:PL    0/1:15,11:26:99:299,0,558
15    59192257    rs35822874    GA    G    67.50    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=10;FS=0.0;HRun=14;HaplotypeScore=48.0578;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=6.75;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLTM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249736    GT:AD:DP:GQ:PL    0/1:3,6:10:5.01:106,0,5
15    59225818    rs2279719    G    A    137.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=17.15;ReadPosRankSum=0.322;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_15_59225603_59225886;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLTM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249736    GT:AD:DP:GQ:PL    0/1:3,5:8:91.94:167,0,92
15    59323048    rs2899642    C    G    910.89    PASS    AB=0.262;AC=1;AF=0.50;AN=2;BaseQRankSum=2.718;DB;DP=43;Dels=0.0;FS=3.289;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.058;QD=21.18;ReadPosRankSum=-0.544;SNPEFF_AMINO_ACID_CHANGE=N9K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_59323003_59323901;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF111;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348370    GT:AD:DP:GQ:PL    0/1:11,31:43:99:941,0,234
15    59463957    rs2306789    A    G    359.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:393,33,0
15    59464039    rs2306788    G    A    884.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:918,66,0
15    59480141    rs11071412    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
15    59510189    rs2230155    G    A    1294.51    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=3.102;DB;DP=108;Dels=0.0;FS=1.588;HRun=0;HaplotypeScore=2.3609;MQ=59.14;MQ0=0;MQRankSum=0.102;QD=11.99;ReadPosRankSum=0.168;SNPEFF_AMINO_ACID_CHANGE=S336;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_59510090_59510286;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    0/1:60,47:108:99:1325,0,1804
15    59515104    rs3816813    C    G    80.63    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.392;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.849;QD=6.2;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    0/1:9,4:13:99:111,0,297
15    59515434    rs2306779    C    T    392.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.464;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=57.39;MQ0=0;MQRankSum=-0.756;QD=14.53;ReadPosRankSum=-1.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    0/1:12,15:27:99:422,0,411
15    59515446    rs2306780    C    G    278.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.076;DB;DP=22;Dels=0.0;FS=4.269;HRun=0;HaplotypeScore=0.9578;MQ=57.3;MQ0=0;MQRankSum=1.14;QD=12.66;ReadPosRankSum=1.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    0/1:11,11:22:99:309,0,321
15    59524056    rs7165587    T    C    483.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:516,42,0
15    59548475    rs4508371    C    T    927.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288235    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:960,72,0
15    59750606    rs11071447    G    A    130.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
15    59750930    rs11071448    G    A    1040.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1073,78,0
15    59750960    rs7359171    A    G    646.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:680,51,0
15    59752053    rs3803445    G    A    481.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:514,39,0
15    59784334    rs4291860    C    A    335.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
15    59784493    rs4296198    C    T    1775.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=A106;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_59784470_59784588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1809,135,0
15    59784648    rs4417505    A    G    557.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    1/1:0,16:16:45.10:591,45,0
15    59799278    rs4278683    T    C    480.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:513,39,0
15    59799643    rs16941452    C    G    503.54    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.706;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.33;MQ0=0;MQRankSum=-0.659;QD=17.98;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM81A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288228    GT:AD:DP:GQ:PL    0/1:11,17:28:99:534,0,357
15    59911892    rs3743119    G    T    523.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396065    GT:AD:DP:GQ:PL    1/1:0,15:15:45.08:556,45,0
15    59931429    rs2306354    G    C    468.03    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.396;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.553;QD=21.27;ReadPosRankSum=-1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396060    GT:AD:DP:GQ:PL    0/1:6,16:22:99:498,0,194
15    59931556    rs8033208    G    C    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396060    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
15    59944203    rs11637071    A    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472508    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    59944300    rs4774340    T    C    240.88    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.01;QD=14.17;ReadPosRankSum=-2.261;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472508    GT:AD:DP:GQ:PL    0/1:9,8:17:99:271,0,325
15    59960155    rs6151570    G    C    145.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=14.54;ReadPosRankSum=-2.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464390    GT:AD:DP:GQ:PL    0/1:4,6:10:99:175,0,126
15    59960261    rs6151568    T    C    387.95    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=28;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.626;QD=13.86;ReadPosRankSum=0.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464390    GT:AD:DP:GQ:PL    0/1:13,14:28:99:418,0,391
15    59960956    rs71425879    T    TAC    177.46    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=47.8359;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=19.72;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464390    GT:AD:DP:GQ:PL    0/1:4,5:9:99:216,0,110
15    59960980    rs6151565    C    T    201.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.489;QD=11.17;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464390    GT:AD:DP:GQ:PL    0/1:10,8:18:99:231,0,334
15    59961646    rs2307273    T    C    464.94    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8203;MQ=60.0;MQ0=0;MQRankSum=0.976;QD=20.21;ReadPosRankSum=0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464390    GT:AD:DP:GQ:PL    0/1:9,14:23:99:495,0,294
15    59961752    rs6151561    C    T    71.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464390    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:101,0,70
15    59963488    rs1135148    A    G    657.29    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DB;DP=48;Dels=0.0;FS=6.534;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.371;QD=13.69;ReadPosRankSum=-0.784;SNPEFF_AMINO_ACID_CHANGE=L263;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_59963382_59963513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415213    GT:AD:DP:GQ:PL    0/1:25,23:48:99:687,0,853
15    59964675    rs6151536    C    T    76.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.31;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267859    GT:AD:DP:GQ:PL    0/1:2,3:5:61.95:107,0,62
15    59964798    rs4774342    C    G    2194.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267859    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2228,169,0
15    59964987    rs6151535    G    A    1341.60    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.803;DB;DP=99;Dels=0.0;FS=0.96;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.318;QD=13.55;ReadPosRankSum=1.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267859    GT:AD:DP:GQ:PL    0/1:54,45:99:99:1372,0,1646
15    59970298    rs2307272    C    A    1076.06    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=0.064;DB;DP=79;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9782;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=13.62;ReadPosRankSum=-0.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477543    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1106,0,1289
15    59970407    rs4775199    C    A    366.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=30.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477543    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:399,30,0
15    59970420    rs6151514    A    G    149.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-0.361;QD=16.66;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477543    GT:AD:DP:GQ:PL    0/1:4,5:9:99:180,0,140
15    59972372    rs6151510    A    C    38.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.4691;MQ=56.85;MQ0=0;MQRankSum=1.268;QD=2.59;ReadPosRankSum=-0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267859    GT:AD:DP:GQ:PL    0/1:10,5:15:68.86:69,0,299
15    59974458    rs6151487    G    A    332.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.415;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.657;QD=15.1;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267859    GT:AD:DP:GQ:PL    0/1:11,11:22:99:362,0,274
15    59974481    rs6151486    G    T    263.13    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.255;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.425;QD=10.53;ReadPosRankSum=1.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267859    GT:AD:DP:GQ:PL    0/1:16,9:25:99:293,0,494
15    59974566    rs2307275    C    G    1371.52    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.052;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4201;MQ=59.81;MQ0=0;MQRankSum=-0.954;QD=12.82;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267859    GT:AD:DP:GQ:PL    0/1:59,48:107:99:1402,0,1624
15    59974777    rs6151483    A    G    583.42    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.909;DB;DP=40;Dels=0.0;FS=6.348;HRun=0;HaplotypeScore=1.6208;MQ=58.84;MQ0=0;MQRankSum=-1.389;QD=14.59;ReadPosRankSum=1.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BNIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267859    GT:AD:DP:GQ:PL    0/1:21,19:40:99:613,0,627
15    60297110    rs75582291    G    A    175.74    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=12.55;ReadPosRankSum=-1.097;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_60297106_60298142;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396057    GT:AD:DP:GQ:PL    0/1:8,6:14:99:206,0,240
15    60643302    rs3743269    T    C    416.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:449,36,0
15    60643598    rs3743270    C    G    128.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
15    60643853    rs8037326    C    G    1115.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=38.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    1/1:0,29:29:84.28:1149,84,0
15    60644074    rs11633619    C    T    339.67    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.782;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=57.77;MQ0=0;MQRankSum=0.246;QD=16.17;ReadPosRankSum=-0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    0/1:10,11:21:99:370,0,265
15    60648214    rs12898604    T    C    642.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.687;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2312;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=11.48;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    0/1:32,24:56:99:673,0,1109
15    60678298    rs11855679    T    A    506.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    1/1:0,15:16:39.13:540,39,0
15    60678328    rs11858864    C    T    374.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    1/1:0,14:14:33.08:407,33,0
15    60678350    rs7182242    T    C    282.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:315,24,0
15    60690089    rs12904657    A    G    31.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.22;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=C8;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_60690070_60690185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANXA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332680    GT:AD:DP:GQ:PL    0/1:3,2:5:61.07:61,0,62
15    60715800    rs1046657    T    G    64.11    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.264;QD=3.77;ReadPosRankSum=0.264;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    0/1:12,5:17:94.10:94,0,347
15    60720488    rs59228235    T    C    219.53    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=18.29;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    0/1:5,7:12:99:250,0,161
15    60721057    rs4775271    C    T    135.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=19.43;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    0/1:2,5:7:57.96:166,0,58
15    60724118    rs12437617    C    G    623.90    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.913;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.278;QD=10.76;ReadPosRankSum=-2.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    0/1:27,31:58:99:654,0,836
15    60724317    rs60675189    T    TA    342.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=16.9165;IndelType=I;MQ=60.0;MQ0=0;QD=42.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:384,24,0
15    60734460    rs12442393    C    G    81.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
15    60734697    rs1063100    A    G    1196.39    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=82;Dels=0.0;FS=1.868;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.801;QD=14.59;ReadPosRankSum=-0.45;SNPEFF_AMINO_ACID_CHANGE=Y644;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_60734615_60734744;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439632    GT:AD:DP:GQ:PL    0/1:37,45:82:99:1226,0,1088
15    60740915    rs1901993    C    T    238.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:272,21,0
15    60742063    rs1869484    G    T    564.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.859;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;MQRankSum=0.979;QD=13.44;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    0/1:24,18:42:99:594,0,651
15    60745693    rs12324091    T    C    226.09    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=17.39;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261520    GT:AD:DP:GQ:PL    0/1:5,8:13:99:256,0,174
15    60789798    rs11071539    G    T    2055.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=36.07;SNPEFF_AMINO_ACID_CHANGE=T421;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_60780483_60789818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449337    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2089,153,0
15    60791954    rs2290430    A    C    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.48;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261523    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,113
15    60794759    rs1869488    C    T    136.09    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.37;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261523    GT:AD:DP:GQ:PL    0/1:6,5:11:99:166,0,217
15    60794766    rs1869487    A    T    444.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261523    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:477,36,0
15    60794807    rs1869486    A    G    328.51    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.598;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.465;QD=11.33;ReadPosRankSum=-1.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261523    GT:AD:DP:GQ:PL    0/1:17,12:29:99:359,0,596
15    60795314    rs1866006    C    T    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261523    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
15    60797607    rs7171309    T    C    785.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261523    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:819,60,0
15    60824108    rs10851682    T    C    530.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261523    GT:AD:DP:GQ:PL    1/1:0,17:17:48.12:564,48,0
15    60850320    rs4774369    A    T    513.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RORA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261523    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:547,42,0
15    62146969    rs2241491    T    A    203    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=18.45;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:4,7:11:99:233,0,135
15    62147207    rs2241492    T    A    166.55    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.0;QD=13.88;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:5,7:12:99:197,0,162
15    62156690    rs3210522    C    T    243.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=18;Dels=0.0;FS=7.259;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=13.52;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395896    GT:AD:DP:GQ:PL    0/1:10,8:18:99:273,0,356
15    62160758    rs7163441    C    A    693.22    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.061;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=59.46;MQ0=0;MQRankSum=-1.13;QD=16.12;ReadPosRankSum=2.685;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:21,22:43:99:723,0,719
15    62167017    rs6494299    G    A    752.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=5.042;DB;DP=48;Dels=0.0;FS=7.221;HRun=0;HaplotypeScore=1.865;MQ=59.52;MQ0=0;MQRankSum=0.031;QD=15.68;ReadPosRankSum=0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:24,24:48:99:782,0,649
15    62167897    rs12708469    G    A    552.42    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=45;Dels=0.0;FS=9.861;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=12.28;ReadPosRankSum=-0.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:26,19:45:99:582,0,868
15    62169072    rs11071634    A    G    419.28    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.792;DB;DP=20;Dels=0.0;FS=4.559;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=20.96;ReadPosRankSum=0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:7,13:20:99:449,0,222
15    62172985    rs3809517    G    A    649.70    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=42;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.093;QD=15.47;ReadPosRankSum=0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:17,25:42:99:680,0,586
15    62175019    rs12912348    T    C    392.76    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.253;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.326;QD=18.7;ReadPosRankSum=0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:8,13:21:99:423,0,274
15    62199342    rs28413840    T    A    315.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.828;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9559;MQ=60.0;MQ0=0;MQRankSum=0.037;QD=15.04;ReadPosRankSum=-0.783;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:7,14:21:99:346,0,238
15    62201333    rs35201581    GA    G    324.38    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=2.73;DB;DP=35;FS=0.0;HRun=11;HaplotypeScore=111.0878;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.262;QD=9.27;ReadPosRankSum=0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:15,19:35:99:363,0,216
15    62202482    rs10851704    C    T    645.01    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.707;DB;DP=59;Dels=0.0;FS=2.245;HRun=3;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.55;QD=10.93;ReadPosRankSum=-1.083;SNPEFF_AMINO_ACID_CHANGE=S2870N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_62202376_62202504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:34,25:59:99:675,0,1068
15    62202638    rs10851705    T    C    153.97    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=57.44;MQ0=0;MQRankSum=-1.408;QD=14.0;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:5,6:11:99:184,0,169
15    62203884    rs12906423    T    A    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:69,6,0
15    62210274    rs11071639    G    T    995.35    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.655;DB;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=1.624;QD=16.87;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:23,36:59:99:1025,0,687
15    62211450    rs963024    G    A    477.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.97;DB;DP=42;Dels=0.0;FS=1.511;HRun=0;HaplotypeScore=1.9075;MQ=60.0;MQ0=0;MQRankSum=-1.334;QD=11.36;ReadPosRankSum=-0.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:24,18:42:99:507,0,714
15    62212467    rs143926369    C    T    862.64    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.04;DB;DP=62;Dels=0.0;FS=3.54;HRun=0;HaplotypeScore=1.5362;MQ=60.0;MQ0=0;MQRankSum=-0.064;QD=13.91;ReadPosRankSum=-0.615;SNPEFF_AMINO_ACID_CHANGE=V2383I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_62212266_62212530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:34,28:62:99:893,0,1117
15    62213933    rs7164933    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    62221592    rs28411984    A    C    338.68    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=1.182;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.182;QD=28.22;ReadPosRankSum=0.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:2,10:12:45.78:369,0,46
15    62223273    rs9788670    C    T    1199.40    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.946;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.194;QD=16.89;ReadPosRankSum=-0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:32,39:71:99:1229,0,888
15    62228696    rs11071641    G    C    204.67    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=18.61;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:4,7:11:99:235,0,130
15    62232796    rs7172838    C    T    842.43    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.236;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.52;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:22,29:51:99:872,0,558
15    62238231    rs2113932    G    A    164.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=11.0;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:9,6:15:99:195,0,323
15    62239304    rs7166891    A    T    318.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.972;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6809;MQ=60.0;MQ0=0;MQRankSum=0.052;QD=9.1;ReadPosRankSum=-1.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:21,14:35:99:349,0,758
15    62243090    rs10639244    A    AATAT    635.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=30.3923;IndelType=I;MQ=56.78;MQ0=1;QD=63.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    1/1:1,8:9:27.09:678,27,0
15    62244281    rs17238252    C    G    267.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.4;QD=17.84;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:5,10:15:99:298,0,163
15    62255172    rs17304010    A    G    80.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.14;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:111,0,67
15    62259637    rs3784634    C    T    791.77    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.339;DB;DP=63;Dels=0.0;FS=2.422;HRun=4;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.601;QD=12.57;ReadPosRankSum=0.036;SNPEFF_AMINO_ACID_CHANGE=R931K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_62259567_62259646;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:30,33:63:99:822,0,822
15    62265019    rs3833020    A    AT    863.96    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.507;DB;DP=48;FS=1.61;HRun=0;HaplotypeScore=110.5226;IndelType=I;MQ=60.2;MQ0=0;MQRankSum=-0.011;QD=18.0;ReadPosRankSum=0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:25,23:48:99:903,0,895
15    62265507    rs11071645    G    A    127.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
15    62270765    rs3784632    G    A    640.95    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=3.115;DB;DP=40;Dels=0.0;FS=7.315;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=16.02;ReadPosRankSum=0.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:21,19:40:99:671,0,602
15    62284101    rs8032433    A    G    211.13    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.992;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=57.39;MQ0=0;MQRankSum=1.268;QD=11.73;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:7,11:18:99:241,0,226
15    62299820    rs9635310    T    C    44.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.76;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
15    62304420    rs72385459    GACAC    G    273.41    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=1.523;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=155.1627;IndelType=D;MQ=55.75;MQ0=0;MQRankSum=1.208;QD=8.82;ReadPosRankSum=2.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:22,8:31:99:312,0,525
15    62327127    rs2414758    T    C    855.63    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.928;DB;DP=41;Dels=0.0;FS=7.602;HRun=0;HaplotypeScore=1.6229;MQ=60.0;MQ0=0;MQRankSum=0.838;QD=20.87;ReadPosRankSum=3.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS13C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249837    GT:AD:DP:GQ:PL    0/1:15,25:41:99:886,0,449
15    62456358    rs8040712    A    C    199.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=F276V;SNPEFF_CODON_CHANGE=Ttc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_62455737_62457223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2CD4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380392    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
15    62535864    rs11635709    T    C    1388.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=29.54;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429274    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1421,108,0
15    62538959    rs2955804    A    G    253.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;QD=21.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429274    GT:AD:DP:GQ:PL    1/1:0,12:12:24.07:287,24,0
15    62538972    rs2271783    C    A    248.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429274    GT:AD:DP:GQ:PL    1/1:0,12:12:24.06:281,24,0
15    62539151    rs7402021    T    C    712.77    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=20.9709;MQ=35.73;MQ0=2;QD=27.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429274    GT:AD:DP:GQ:PL    1/1:1,25:26:63.16:746,63,0
15    62539153    rs113348682    T    TGG    1307.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=2;HaplotypeScore=318.1049;IndelType=I;MQ=36.91;MQ0=2;QD=48.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429274    GT:AD:DP:GQ:PL    1/1:3,24:25:72.25:1349,72,0
15    62539162    rs2955803    A    C    759.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.4;MQ0=2;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429274    GT:AD:DP:GQ:PL    1/1:1,26:27:66.17:792,66,0
15    62539185    rs2945418    T    C    800.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.86;MQ0=2;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429274    GT:AD:DP:GQ:PL    1/1:1,26:27:72.17:834,72,0
15    62539894    rs17271570    A    G    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429274    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
15    62546263    rs2611794    G    A    281.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
15    62546460    rs35208395    T    TCTC    1528.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=83.1637;IndelType=I;MQ=58.7;MQ0=0;QD=61.16;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,23:25:75.25:1571,75,0
15    62546657    rs11633729    T    C    521.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:554,45,0
15    62546659    rs2250367    G    C    513.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:547,45,0
15    62939440    rs938979    T    C    485.66    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.31;DB;DP=48;Dels=0.0;FS=6.404;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.287;QD=10.12;ReadPosRankSum=-0.671;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:30,18:48:99:516,0,931
15    62944448    rs10775179    G    C    57.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=6.36;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:4,5:9:87.25:87,0,142
15    62945250    rs12916083    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
15    62967342    rs1878785    A    G    631.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,21:21:57.14:664,57,0
15    62967395    rs1878784    C    T    911.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:944,69,0
15    62967554    rs1878783    T    C    636.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,22:22:57.15:670,57,0
15    62979016    rs12917611    A    C    84.33    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.0;QD=6.49;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:7,5:13:99:114,0,256
15    62984874    rs11630525    G    A    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
15    62985267    rs2009523    G    A    64.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=9.23;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:4,3:7:94.62:95,0,143
15    62989775    rs8034474    T    C    1026.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,30:30:84.25:1060,84,0
15    62994428    rs12594220    G    C    157.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:190,15,0
15    62994784    rs67465793    C    T    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    62994928    rs12908653    G    A    300.41    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.22;QD=17.67;ReadPosRankSum=-3.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:7,10:17:99:330,0,211
15    63000620    rs116926722    C    G    517.30    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.079;DB;DP=37;Dels=0.0;FS=5.78;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.319;QD=13.98;ReadPosRankSum=-1.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:18,19:37:99:547,0,589
15    63004025    rs57185050    A    G    226.64    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=17.43;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:5,8:13:99:257,0,149
15    63009804    rs1320191    C    T    111.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-2.148;QD=11.17;ReadPosRankSum=-1.453;SNPEFF_AMINO_ACID_CHANGE=A931;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63009775_63009888;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:5,5:10:99:142,0,159
15    63014548    rs10775181    A    G    317.84    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.893;QD=21.19;ReadPosRankSum=-0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:4,11:15:99:348,0,118
15    63030398    rs12900862    T    C    1309.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1342,102,0
15    63044379    rs7171264    A    G    725.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:758,57,0
15    63044637    rs7176359    A    G    1037.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1071,78,0
15    63047778    rs8033767    C    T    889.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=27.8;SNPEFF_AMINO_ACID_CHANGE=C1508;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63047731_63047892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,32:32:72.22:923,72,0
15    63055658    rs10152548    T    A    797.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,24:24:63.17:831,63,0
15    63073639    rs4774450    T    A    107.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=26.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:140,12,0
15    63075918    rs10543147    CTCTGTG    C    288.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=41.7215;IndelType=D;MQ=44.47;MQ0=1;QD=41.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:1,6:6:18.06:331,18,0
15    63092334    rs2271801    C    G    105    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=8.75;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:6,6:12:99:135,0,212
15    63111739    rs3816988    T    C    1148.54    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.236;DB;DP=72;Dels=0.0;FS=3.383;HRun=0;HaplotypeScore=0.7887;MQ=59.68;MQ0=0;MQRankSum=0.166;QD=15.95;ReadPosRankSum=-1.478;SNPEFF_AMINO_ACID_CHANGE=F2266L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63111715_63111820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1179,0,933
15    63125463    rs75982915    C    G    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=9.15;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:2,2:4:59.35:67,0,59
15    63125960    rs79818289    C    G    119.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.9;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:2,4:6:65.93:149,0,66
15    63128005    rs7180139    T    A    1058.71    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.699;DB;DP=72;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=1.057;QD=14.7;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1089,0,1049
15    63131117    rs937418    T    A    1863.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.58;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=A2479;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63131055_63131180;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1896,144,0
15    63131237    rs10679176    C    CAG    1676.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=91.7568;IndelType=I;MQ=61.64;MQ0=0;QD=42.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306829    GT:AD:DP:GQ:PL    1/1:6,32:39:99:1719,99,0
15    63349096    rs4775613    G    A    3495.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.5631;MQ=59.2;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267996    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3496,265,0
15    63351687    rs4775614    A    G    833.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267996    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:866,66,0
15    63351840    rs1071646    C    A    1354.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=58.92;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=A115;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63351762_63351879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334895    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1388,108,0
15    63353760    rs4774472    C    A    516.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267996    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:550,45,0
15    63363401    rs2652810    C    CATTTTGTTTT    2015.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=100.3002;IndelType=I;MQ=38.15;MQ0=0;QD=125.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334895    GT:AD:DP:GQ:PL    1/1:2,12:16:48.16:2058,48,0
15    63414083    rs34317102    A    C    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_AMINO_ACID_CHANGE=M5L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63413999_63414427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261893    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
15    63420001    rs2652824    C    T    299.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261893    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:333,24,0
15    63433766    rs2729835    G    A    227.52    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=26;Dels=0.0;FS=3.851;HRun=3;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.014;QD=8.75;ReadPosRankSum=1.908;SNPEFF_AMINO_ACID_CHANGE=R469K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63433479_63434260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261893    GT:AD:DP:GQ:PL    0/1:17,9:26:99:258,0,457
15    63434110    rs8468    C    T    41.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5149;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=8.29;ReadPosRankSum=0.358;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LACTB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261893    GT:AD:DP:GQ:PL    0/1:3,2:5:64.33:71,0,64
15    63449543    rs7170846    A    C    1234.23    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.172;DB;DP=102;Dels=0.0;FS=0.85;HRun=0;HaplotypeScore=3.3608;MQ=59.55;MQ0=0;MQRankSum=-0.332;QD=12.1;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS27L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330964    GT:AD:DP:GQ:PL    0/1:52,50:102:99:1264,0,1344
15    63449680    rs2292038    C    G    663.69    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=4.288;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.458;QD=14.12;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS27L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411926    GT:AD:DP:GQ:PL    0/1:23,24:47:99:694,0,639
15    63547859    rs3784673    G    C    158.50    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.849;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.78;MQ0=0;MQRankSum=0.95;QD=8.34;ReadPosRankSum=1.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB8B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321437    GT:AD:DP:GQ:PL    0/1:11,8:19:99:188,0,362
15    63570441    rs112744564    GA    G    96.54    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=15;FS=0.0;HRun=15;HaplotypeScore=65.6005;IndelType=D;MQ=59.18;MQ0=0;MQRankSum=-0.54;QD=6.44;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261879    GT:AD:DP:GQ:PL    0/1:6,9:15:46.43:136,0,46
15    63571209    rs8023653    C    T    31.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261879    GT:AD:DP:GQ:PL    0/1:4,2:6:61.26:61,0,147
15    63571779    rs55729424    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261879    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
15    63598162    rs184584190    G    A    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APH1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380340    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
15    63639016    rs2270764    A    G    192.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=21.43;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000178638    GT:AD:DP:GQ:PL    0/1:3,6:9:93.70:223,0,94
15    63848805    rs3751043    C    G    807.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268049    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:840,63,0
15    63866708    rs74018128    G    C    190.62    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=21.18;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536001    GT:AD:DP:GQ:PL    0/1:3,6:9:95.52:221,0,96
15    63881298    rs145019700    T    C    362.68    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.553;DB;DP=28;Dels=0.03;FS=0.0;HRun=2;HaplotypeScore=4.3514;MQ=59.04;MQ0=0;MQRankSum=1.06;QD=12.51;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268049    GT:AD:DP:GQ:PL    0/1:13,15:28:99:393,0,452
15    63889934    rs8035931    G    C    215.73    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.093;QD=9.38;ReadPosRankSum=-0.031;SNPEFF_AMINO_ACID_CHANGE=V109L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63889596_63889944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539570    GT:AD:DP:GQ:PL    0/1:13,10:23:99:246,0,454
15    63907940    rs7178853    T    C    1077.76    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.787;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5773;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=12.11;ReadPosRankSum=-0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:47,41:89:99:1108,0,1474
15    63908449    rs34447047    C    CTCTA    354.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=14.0206;IndelType=I;MQ=49.96;MQ0=0;QD=70.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:396,15,0
15    63921152    rs67330370    CT    C    54.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=15;HaplotypeScore=40.5764;IndelType=D;MQ=52.65;MQ0=0;QD=5.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:5,5:10:14.71:96,15,0
15    63922474    rs11071759    T    C    159.17    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=9.95;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:9,7:16:99:189,0,309
15    63922752    rs10851731    T    A    6021.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.606;DB;DP=168;DS;Dels=0.0;FS=6.532;HRun=1;HaplotypeScore=1.6649;MQ=59.59;MQ0=0;MQRankSum=-1.328;QD=35.84;ReadPosRankSum=1.626;SNPEFF_AMINO_ACID_CHANGE=I4293;SNPEFF_CODON_CHANGE=atA/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63922665_63922834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:1,165:168:99:6022,411,0
15    63930798    rs80088271    G    A    1957.24    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=4.288;DB;DP=107;Dels=0.0;FS=1.656;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=1.055;QD=18.29;ReadPosRankSum=-0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:48,59:107:99:1987,0,1394
15    63932513    rs2228517    G    C    2039.04    PASS    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.96;DB;DP=180;Dels=0.0;FS=0.566;HRun=0;HaplotypeScore=3.5564;MQ=59.74;MQ0=0;MQRankSum=1.006;QD=11.33;ReadPosRankSum=0.588;SNPEFF_AMINO_ACID_CHANGE=L3913;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63932351_63932644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:103,77:180:99:2069,0,3117
15    63935030    rs76285931    G    A    105.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.58;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:2,4:6:64.82:135,0,65
15    63937209    rs2229749    C    G    7856    PASS    AC=2;AF=1.00;AN=2;DB;DP=236;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9512;MQ=59.71;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=E3722D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63937191_63937296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:0,235:236:99:7856,581,0
15    63937657    rs8029051    G    T    812.37    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=4.802;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.062;QD=15.33;ReadPosRankSum=0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:25,28:53:99:842,0,713
15    63953153    rs2272209    A    G    2261.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2295,178,0
15    63954029    rs2228511    C    T    8554.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.409;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7473;MQ=59.63;MQ0=0;MQRankSum=0.75;QD=34.22;ReadPosRankSum=0.933;SNPEFF_AMINO_ACID_CHANGE=P3031;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63953952_63954220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:1,249:250:99:8555,601,0
15    63955576    rs2414828    A    C    448.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:481,42,0
15    63958762    rs1815130    T    C    1254.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.36;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1288,99,0
15    63962021    rs7175463    G    A    196.81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=13.12;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:6,9:15:99:227,0,204
15    63964568    rs7166366    A    G    164.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
15    63970456    rs2228510    T    C    1462.74    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.973;DB;DP=89;Dels=0.0;FS=5.706;HRun=0;HaplotypeScore=4.3225;MQ=59.32;MQ0=0;MQRankSum=2.503;QD=16.44;ReadPosRankSum=1.638;SNPEFF_AMINO_ACID_CHANGE=I2220V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63970044_63970564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:39,50:89:99:1493,0,1098
15    63972456    rs185593457    A    C    258.07    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.198;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.681;QD=11.73;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:10,12:22:99:288,0,334
15    63987224    rs36115945    A    AG    581.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=31.8262;IndelType=I;MQ=61.64;MQ0=0;QD=44.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:624,39,0
15    63988357    rs63019465    C    G    2648.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=G1696A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_63988323_63988538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2681,205,0
15    63998863    rs17186968    T    G    156.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
15    63998900    rs142578274    T    G    118.90    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.717;QD=10.81;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:6,5:11:99:149,0,207
15    64005722    rs61749474    A    G    1537.22    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.873;DB;DP=112;Dels=0.0;FS=2.55;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=1.407;QD=13.73;ReadPosRankSum=-0.965;SNPEFF_AMINO_ACID_CHANGE=L1431;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64005552_64005864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:55,57:112:99:1567,0,1720
15    64008341    rs7176625    G    A    369.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.947;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.529;QD=17.61;ReadPosRankSum=-1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:7,14:21:99:400,0,229
15    64011104    rs7176133    T    C    2217.56    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=3.35;DB;DP=126;Dels=0.0;FS=12.947;HRun=0;HaplotypeScore=1.9134;MQ=59.82;MQ0=0;MQRankSum=0.267;QD=17.6;ReadPosRankSum=-0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:58,68:126:99:2248,0,1682
15    64015369    rs143278098    T    C    798.39    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=3.794;DB;DP=69;Dels=0.0;FS=1.253;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.458;QD=11.57;ReadPosRankSum=-1.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:41,28:69:99:828,0,1324
15    64015649    rs188437905    A    T    705.57    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.713;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.731;QD=14.4;ReadPosRankSum=-0.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:23,26:49:99:736,0,811
15    64019758    rs113752258    T    TA    483.49    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=43.4483;IndelType=I;MQ=58.22;MQ0=0;MQRankSum=0.57;QD=24.17;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:7,13:20:99:523,0,177
15    64020073    rs9920746    C    T    1451.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1484,114,0
15    64022096    rs11856836    T    C    38.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
15    64025223    rs35978932    T    C    1284.75    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.994;DB;DP=120;Dels=0.0;FS=1.531;HRun=0;HaplotypeScore=0.6651;MQ=59.81;MQ0=0;MQRankSum=-1.568;QD=10.71;ReadPosRankSum=-0.81;SNPEFF_AMINO_ACID_CHANGE=N923S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64025123_64025344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443617    GT:AD:DP:GQ:PL    0/1:71,49:120:99:1315,0,2365
15    64025473    rs1039819    A    C    160.09    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=9.42;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:11,6:17:99:190,0,366
15    64039005    rs74321359    G    A    104.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=10.42;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,177
15    64046999    rs74019008    T    C    305.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.34;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.398;QD=15.26;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:10,10:20:99:335,0,344
15    64050300    rs12912999    G    A    1640.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.45;MQ0=0;QD=39.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1673,123,0
15    64067037    rs2228515    T    C    2619.78    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.674;DB;DP=176;Dels=0.0;FS=5.541;HRun=1;HaplotypeScore=3.3936;MQ=59.5;MQ0=0;MQRankSum=-1.586;QD=14.89;ReadPosRankSum=2.45;SNPEFF_AMINO_ACID_CHANGE=R262;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64066893_64067848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425434    GT:AD:DP:GQ:PL    0/1:89,87:176:99:2650,0,2602
15    64162957    rs16947527    A    T    30.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.17;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR422A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362286    GT:AD:DP:GQ:PL    0/1:3,2:5:60.85:61,0,106
15    64200675    rs113724599    C    T    145.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=14.55;ReadPosRankSum=0.365;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261891    GT:AD:DP:GQ:PL    0/1:4,6:10:99:176,0,138
15    64217094    rs16947584    T    A    243.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.618;QD=13.54;ReadPosRankSum=-1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261891    GT:AD:DP:GQ:PL    0/1:9,9:18:99:274,0,313
15    64365021    rs332254    A    G    374.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM96A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300030    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:407,30,0
15    64365340    rs4622459    C    T    142.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=17.77;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM96A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300030    GT:AD:DP:GQ:PL    0/1:3,5:8:97.15:172,0,97
15    64367775    rs332234    T    C    627.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM96A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300030    GT:AD:DP:GQ:PL    1/1:0,25:25:57.13:660,57,0
15    64385851    rs332259    T    C    2130    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.86;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=E39;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64385844_64386217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM96A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300030    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2163,166,0
15    64410484    rs2290117    G    T    1625.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1659,123,0
15    64418221    rs2290119    C    G    679.52    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=52;Dels=0.0;FS=5.747;HRun=0;HaplotypeScore=2.8723;MQ=59.11;MQ0=0;MQRankSum=0.186;QD=13.07;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    0/1:29,23:52:99:710,0,802
15    64418397    rs1130603    G    A    1627.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5544;MQ=59.14;MQ0=0;MQRankSum=0.395;QD=27.59;ReadPosRankSum=0.213;SNPEFF_AMINO_ACID_CHANGE=P145;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64418278_64418419;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1661,138,0
15    64418483    rs2290121    C    T    884.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8224;MQ=59.07;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    1/1:0,25:25:72.20:917,72,0
15    64419374    rs34257057    G    T    208.01    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.402;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=9.46;ReadPosRankSum=0.735;SNPEFF_AMINO_ACID_CHANGE=G153;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64419373_64419451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    0/1:13,9:22:99:238,0,371
15    64428657    rs2290122    G    A    324.99    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=1.678;DB;DP=13;Dels=0.0;FS=5.304;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.27;QD=25.0;ReadPosRankSum=0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    0/1:2,11:13:36.69:355,0,37
15    64428860    rs117752476    C    G    42.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=8.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    0/1:2,3:5:72.37:72,0,73
15    64429643    rs72755099    G    A    116.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.7;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    0/1:3,4:7:91.43:147,0,91
15    64429898    .    G    A    109.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.65;ReadPosRankSum=-1.3;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261889    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,107
15    64445681    rs34975001    GC    G    140.98    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=8.451;HRun=1;HaplotypeScore=16.4376;IndelType=D;MQ=61.53;MQ0=0;MQRankSum=0.198;QD=20.14;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300026    GT:AD:DP:GQ:PL    0/1:2,5:7:74.91:180,0,75
15    64448365    rs2253557    C    T    946.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300026    GT:AD:DP:GQ:PL    1/1:0,29:29:75.23:980,75,0
15    64496926    rs62024569    T    C    254.20    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=16;Dels=0.0;FS=5.237;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.573;QD=15.89;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303032    GT:AD:DP:GQ:PL    0/1:6,10:16:99:284,0,183
15    64508647    rs72756938    C    A    180.34    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=16.39;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303032    GT:AD:DP:GQ:PL    0/1:5,6:11:99:210,0,178
15    64508763    rs6494466    G    A    562.65    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=48;Dels=0.0;FS=2.557;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=1.004;QD=11.72;ReadPosRankSum=-0.279;SNPEFF_AMINO_ACID_CHANGE=L104;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64508761_64508850;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447727    GT:AD:DP:GQ:PL    0/1:26,22:48:99:593,0,748
15    64551279    rs6494469    C    T    121.16    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.19;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303032    GT:AD:DP:GQ:PL    0/1:1,4:6:19.30:151,0,19
15    64668865    rs150562530    G    A    55.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.88;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300035    GT:AD:DP:GQ:PL    0/1:4,3:7:85.16:85,0,112
15    64673615    rs11554310    A    G    330.37    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.301;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.866;MQ=55.8;MQ0=0;MQRankSum=0.137;QD=9.72;ReadPosRankSum=-1.724;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_64673525_64673709;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300035    GT:AD:DP:GQ:PL    0/1:19,15:34:99:360,0,486
15    64693149    rs11380356    G    GT    165.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=8;HaplotypeScore=11.0807;IndelType=I;MQ=61.78;MQ0=0;QD=27.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261884    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:208,18,0
15    64702168    rs10468032    G    A    104.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.754;QD=14.96;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261884    GT:AD:DP:GQ:PL    0/1:3,4:7:92.81:135,0,93
15    64706259    rs2046356    G    A    390.85    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.801;DB;DP=37;Dels=0.0;FS=1.631;HRun=0;HaplotypeScore=0.9665;MQ=58.74;MQ0=0;MQRankSum=-0.391;QD=10.56;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261884    GT:AD:DP:GQ:PL    0/1:23,14:37:99:421,0,704
15    64706332    rs34758599    A    G    940.65    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=59.28;MQ0=0;MQRankSum=-0.477;QD=14.7;ReadPosRankSum=0.021;SNPEFF_AMINO_ACID_CHANGE=P364;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64706284_64706410;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261884    GT:AD:DP:GQ:PL    0/1:28,35:64:99:971,0,818
15    64737103    rs7167394    G    C    322.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261884    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:355,27,0
15    64737225    rs7167612    G    A    2040.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_AMINO_ACID_CHANGE=E532;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64737205_64737307;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261884    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2073,150,0
15    64885245    rs117686856    G    T    1689.62    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.508;DB;DP=129;Dels=0.0;FS=1.521;HRun=1;HaplotypeScore=0.8667;MQ=55.51;MQ0=0;MQRankSum=1.353;QD=13.1;ReadPosRankSum=1.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326648    GT:AD:DP:GQ:PL    0/1:69,60:129:99:1720,0,2051
15    64915106    rs525878    C    T    2134.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=P276;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64915026_64915251;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF609;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326648    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2167,175,0
15    64962630    rs11633399    A    C    450.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.24;DB;DP=45;Dels=0.0;FS=1.256;HRun=5;HaplotypeScore=0.9665;MQ=58.97;MQ0=0;MQRankSum=0.103;QD=10.02;ReadPosRankSum=-0.948;SNPEFF_AMINO_ACID_CHANGE=P353;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64962545_64962632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF609;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326648    GT:AD:DP:GQ:PL    0/1:25,20:45:99:481,0,838
15    64967654    rs16948170    C    T    1346.82    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.187;DB;DP=81;Dels=0.0;FS=3.181;HRun=0;HaplotypeScore=1.7313;MQ=60.0;MQ0=0;MQRankSum=-0.837;QD=16.63;ReadPosRankSum=0.846;SNPEFF_AMINO_ACID_CHANGE=A867;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_64966115_64968455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF609;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326648    GT:AD:DP:GQ:PL    0/1:36,44:81:99:1377,0,999
15    64970798    rs16948172    G    A    167.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=58.05;MQ0=0;MQRankSum=-0.259;QD=13.93;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326648    GT:AD:DP:GQ:PL    0/1:6,6:12:99:197,0,212
15    64972760    .    T    TTG    500.36    PASS    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.279;DP=53;FS=0.0;HRun=0;HaplotypeScore=193.5827;IndelType=I;MQ=59.06;MQ0=0;MQRankSum=0.577;QD=9.44;ReadPosRankSum=0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326648    GT:AD:DP:GQ:PL    0/1:34,16:53:99:539,0,731
15    65033311    rs6494489    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    65040928    rs12911708    C    T    115.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:148,12,0
15    65041044    rs6494492    C    A    127.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
15    65041232    rs145944256    C    T    335.23    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.622;DB;DP=26;Dels=0.0;FS=4.31;HRun=0;HaplotypeScore=1.7987;MQ=58.2;MQ0=0;MQRankSum=0.0;QD=12.89;ReadPosRankSum=-0.695;SNPEFF_AMINO_ACID_CHANGE=A129T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65041199_65041349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    0/1:11,14:26:99:365,0,360
15    65041622    rs6494493    C    A    994.17    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.839;DB;DP=100;Dels=0.0;FS=6.6;HRun=0;HaplotypeScore=1.5518;MQ=59.58;MQ0=0;MQRankSum=-0.33;QD=9.94;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    0/1:63,37:100:99:1024,0,1887
15    65042312    rs72744734    C    A    428.05    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.775;QD=17.84;ReadPosRankSum=-0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    0/1:10,14:24:99:458,0,311
15    65054533    rs72744744    C    T    242.42    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=24;Dels=0.0;FS=7.877;HRun=0;HaplotypeScore=0.8667;MQ=37.63;MQ0=0;MQRankSum=-0.088;QD=10.1;ReadPosRankSum=1.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    0/1:14,10:24:99:272,0,423
15    65054562    rs80059074    T    TG    1289.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=3;HaplotypeScore=217.8141;IndelType=I;MQ=36.07;MQ0=0;QD=42.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    1/1:3,27:30:90.30:1331,90,0
15    65054571    rs71133474    A    AG    1408.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=2;HaplotypeScore=226.2427;IndelType=I;MQ=39.64;MQ0=0;QD=41.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPMS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300069    GT:AD:DP:GQ:PL    1/1:5,29:34:99:1451,102,0
15    65111797    rs3803377    C    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268043    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
15    65113493    rs1872592    G    A    3018.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.04;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268043    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3052,235,0
15    65114833    rs35204896    G    A    328.06    PASS    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=1.734;DB;DP=15;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.822;QD=21.87;ReadPosRankSum=-1.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268043    GT:AD:DP:GQ:PL    0/1:2,13:15:32.11:358,0,32
15    65140715    rs35048171    C    G    769.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC069368.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437723    GT:AD:DP:GQ:PL    1/1:0,25:25:69.19:803,69,0
15    65158047    rs77456635    G    A    474.23    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.805;DB;DP=28;Dels=0.0;FS=3.831;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.903;QD=16.94;ReadPosRankSum=0.268;SNPEFF_AMINO_ACID_CHANGE=R478Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65157098_65160206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323544    GT:AD:DP:GQ:PL    0/1:12,15:28:99:504,0,287
15    65208227    rs1471834    G    A    130.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AC069368.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437723    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
15    65235776    rs34988193    A    G    2964.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.224;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.13;MQ0=0;MQRankSum=0.876;QD=34.88;ReadPosRankSum=-1.325;SNPEFF_AMINO_ACID_CHANGE=K264E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65235680_65235778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKDD1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395723    GT:AD:DP:GQ:PL    1/1:1,84:85:99:2997,184,0
15    65235861    rs35136467    TC    T    702.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=3;HaplotypeScore=80.6498;IndelType=D;MQ=60.49;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKDD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357698    GT:AD:DP:GQ:PL    1/1:1,21:22:60.19:744,60,0
15    65236875    rs2414865    T    C    436.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_AMINO_ACID_CHANGE=A364;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65236849_65236944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKDD1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380230    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:470,36,0
15    65242260    rs67821096    C    T    426.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKDD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357698    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:459,36,0
15    65256045    rs147428832    G    A    902.84    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=63;Dels=0.0;FS=5.677;HRun=0;HaplotypeScore=3.7244;MQ=58.84;MQ0=0;MQRankSum=2.144;QD=14.33;ReadPosRankSum=-1.477;SNPEFF_AMINO_ACID_CHANGE=Y254;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65255364_65256077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416889    GT:AD:DP:GQ:PL    0/1:27,35:63:99:933,0,758
15    65268979    rs4776255    C    G    175.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204566    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
15    65298672    rs4776660    G    A    255.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTFMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220058    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:288,21,0
15    65308583    rs34348990    C    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTFMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220058    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    65308981    rs12912782    T    A    985.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.418;QD=34.0;ReadPosRankSum=0.657;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTFMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220058    GT:AD:DP:GQ:PL    1/1:1,28:29:55.57:1019,56,0
15    65344035    rs2946676    G    A    194.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220062    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:227,18,0
15    65344086    rs4238399    C    T    79.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.82;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220062    GT:AD:DP:GQ:PL    0/1:1,3:4:23.21:109,0,23
15    65345033    rs11071825    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220062    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    65347405    rs2232762    G    A    124.13    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=20.69;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=T192;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65346719_65347612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421977    GT:AD:DP:GQ:PL    0/1:1,5:6:18.11:154,0,18
15    65350743    rs2232759    C    G    206.47    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=11.47;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220062    GT:AD:DP:GQ:PL    0/1:10,8:18:99:236,0,265
15    65350968    rs2232758    T    A    308.57    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.093;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.837;QD=12.86;ReadPosRankSum=-1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220062    GT:AD:DP:GQ:PL    0/1:10,14:24:99:339,0,264
15    65351654    rs2232756    C    T    266.48    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=21;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=1.8773;MQ=57.77;MQ0=0;MQRankSum=0.246;QD=12.69;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220062    GT:AD:DP:GQ:PL    0/1:11,10:21:99:296,0,385
15    65357434    rs2232754    C    T    60.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.61;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220062    GT:AD:DP:GQ:PL    0/1:4,3:7:90.24:90,0,107
15    65357491    rs2232753    G    A    380.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220062    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:413,33,0
15    65369531    rs2946642    G    T    41.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_AMINO_ACID_CHANGE=A126;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65369154_65372276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432196    GT:AD:DP:GQ:PL    0/1:2,2:4:52.44:72,0,52
15    65369951    rs2919359    A    G    265.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=24.16;SNPEFF_AMINO_ACID_CHANGE=E266;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65369154_65372276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432196    GT:AD:DP:GQ:PL    1/1:0,11:11:24.06:299,24,0
15    65370353    rs2919360    T    C    591.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=28.18;SNPEFF_AMINO_ACID_CHANGE=G400;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65369154_65372276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KBTBD13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432196    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:625,54,0
15    65447833    rs2414876    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
15    65449169    rs2946670    C    T    954.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300107    GT:AD:DP:GQ:PL    1/1:0,31:31:72.22:988,72,0
15    65489128    rs938952    C    T    874.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=G1166S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65488337_65491437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261883    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:908,69,0
15    65489688    rs2679117    T    C    1336.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=Q979R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65488337_65491437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261883    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1369,105,0
15    65490901    rs2679118    T    C    1414.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7313;MQ=59.46;MQ0=0;QD=32.89;SNPEFF_AMINO_ACID_CHANGE=K575E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65488337_65491437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261883    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1447,111,0
15    65494212    rs2073711    A    G    388.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=35;Dels=0.0;FS=12.767;HRun=0;HaplotypeScore=0.8667;MQ=58.93;MQ0=0;MQRankSum=1.006;QD=11.1;ReadPosRankSum=-0.798;SNPEFF_AMINO_ACID_CHANGE=I395T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65494210_65494367;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261883    GT:AD:DP:GQ:PL    0/1:20,15:35:99:418,0,613
15    65495820    rs2072048    A    G    533.56    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.361;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7938;MQ=58.58;MQ0=0;MQRankSum=-0.959;QD=10.89;ReadPosRankSum=-1.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261883    GT:AD:DP:GQ:PL    0/1:28,20:49:99:564,0,944
15    65495827    rs2073707    A    G    482.21    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.915;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5257;MQ=58.55;MQ0=0;MQRankSum=1.087;QD=10.05;ReadPosRankSum=-1.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261883    GT:AD:DP:GQ:PL    0/1:28,20:48:99:512,0,927
15    65496587    rs2585034    C    T    349.91    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.595;DB;DP=34;Dels=0.0;FS=1.974;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=10.29;ReadPosRankSum=-0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261883    GT:AD:DP:GQ:PL    0/1:22,12:34:99:380,0,653
15    65497849    rs2681038    A    G    89.86    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=11;Dels=0.0;FS=3.31;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=8.17;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261883    GT:AD:DP:GQ:PL    0/1:6,5:11:99:120,0,180
15    65553246    rs2304896    C    T    1269.48    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=113;Dels=0.0;FS=5.111;HRun=0;HaplotypeScore=2.5061;MQ=59.59;MQ0=0;MQRankSum=1.08;QD=11.23;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=V155;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65553223_65553364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444347    GT:AD:DP:GQ:PL    0/1:64,49:113:99:1299,0,1755
15    65621138    rs11853777    G    A    291.58    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.573;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.813;QD=17.15;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443278    GT:AD:DP:GQ:PL    0/1:7,10:17:99:322,0,193
15    65621441    rs12907128    C    A    137.32    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=10.56;ReadPosRankSum=1.493;SNPEFF_AMINO_ACID_CHANGE=V574L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65621247_65621483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443278    GT:AD:DP:GQ:PL    0/1:7,6:13:99:167,0,224
15    65621857    rs509652    T    C    1801.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=L692;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65621728_65621935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327987    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1834,135,0
15    65624228    rs686739    G    C    1160.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327987    GT:AD:DP:GQ:PL    1/1:0,39:39:96.28:1193,96,0
15    65667724    rs666623    A    G    580.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=A40;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65667435_65667740;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327987    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:614,48,0
15    65676617    rs2292933    T    C    430.66    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.862;DB;DP=36;Dels=0.0;FS=1.496;HRun=1;HaplotypeScore=0.9894;MQ=59.48;MQ0=0;MQRankSum=-0.048;QD=11.96;ReadPosRankSum=-1.576;SNPEFF_AMINO_ACID_CHANGE=P1161;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65673802_65676757;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352385    GT:AD:DP:GQ:PL    0/1:20,16:36:99:461,0,656
15    65678141    rs7183130    A    T    363.82    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=20;Dels=0.0;FS=9.951;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.238;QD=18.19;ReadPosRankSum=-0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352385    GT:AD:DP:GQ:PL    0/1:7,13:20:99:394,0,187
15    65680584    rs35193741    G    GA    101.79    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.865;DB;DP=22;FS=0.0;HRun=15;HaplotypeScore=224.7502;IndelType=I;MQ=50.96;MQ0=0;MQRankSum=0.193;QD=4.63;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352385    GT:AD:DP:GQ:PL    0/1:12,5:22:32.28:141,0,32
15    65684422    rs112947536    T    TC    458.57    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.241;DB;DP=40;FS=10.179;HRun=4;HaplotypeScore=103.2479;IndelType=I;MQ=60.81;MQ0=0;MQRankSum=1.344;QD=11.46;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352385    GT:AD:DP:GQ:PL    0/1:25,15:40:99:498,0,663
15    65684533    rs2277582    A    G    580.30    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.173;QD=15.27;ReadPosRankSum=1.509;SNPEFF_AMINO_ACID_CHANGE=A416;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65684472_65684708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356152    GT:AD:DP:GQ:PL    0/1:17,21:38:99:610,0,508
15    65685695    rs2277583    G    A    338.48    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=4.113;DB;DP=25;Dels=0.0;FS=10.307;HRun=0;HaplotypeScore=0.9332;MQ=59.07;MQ0=0;MQRankSum=-0.406;QD=13.54;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352385    GT:AD:DP:GQ:PL    0/1:13,12:25:99:368,0,351
15    65686908    rs12437686    A    G    403.79    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.26;DB;DP=33;Dels=0.0;FS=3.038;HRun=0;HaplotypeScore=1.7273;MQ=60.0;MQ0=0;MQRankSum=-1.501;QD=12.24;ReadPosRankSum=1.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352385    GT:AD:DP:GQ:PL    0/1:20,13:33:99:434,0,610
15    65688824    rs1550028    C    G    186.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=-0.4;QD=10.34;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352385    GT:AD:DP:GQ:PL    0/1:10,8:18:99:216,0,352
15    65694613    rs12439363    C    G    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGDCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352385    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
15    65744267    .    TA    T    38.49    QDFilter2    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DP=60;FS=1.7;HRun=18;HaplotypeScore=414.5817;IndelType=D;MQ=51.12;MQ0=0;MQRankSum=1.633;QD=0.63;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    0/1:35,16:60:77.52:78,0,333
15    65748446    rs77392210    A    ACT    437.07    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=48.2353;IndelType=I;MQ=61.26;MQ0=0;MQRankSum=-0.813;QD=25.71;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    0/1:7,10:17:99:476,0,199
15    65756072    rs3825891    T    C    477.99    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.052;DB;DP=26;Dels=0.0;FS=2.551;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.882;QD=18.38;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    0/1:11,15:26:99:508,0,341
15    65758874    rs7496362    C    G    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,110
15    65782451    rs60062953    A    AT    582.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=23.9673;IndelType=I;MQ=60.0;MQ0=0;QD=44.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:624,39,0
15    65790058    rs3759852    T    C    93.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=7.83;ReadPosRankSum=-1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    0/1:7,5:12:99:124,0,255
15    65792839    rs11071846    G    A    380.18    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.803;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=20.01;ReadPosRankSum=-2.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    0/1:7,12:19:99:410,0,220
15    65804537    rs352477    A    T    298.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:331,27,0
15    65804986    rs9635366    G    A    154.33    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.427;DB;DP=21;Dels=0.0;FS=8.316;HRun=0;HaplotypeScore=0.9789;MQ=58.89;MQ0=0;MQRankSum=1.582;QD=7.35;ReadPosRankSum=-1.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300141    GT:AD:DP:GQ:PL    0/1:13,8:21:99:184,0,450
15    65847512    rs1630765    A    G    90.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261875    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
15    65856805    rs12916360    G    T    668.53    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.113;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.018;QD=20.26;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261875    GT:AD:DP:GQ:PL    0/1:13,20:33:99:699,0,437
15    65874368    rs72049725    T    TA    377.24    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.547;DB;DP=42;FS=4.536;HRun=11;HaplotypeScore=148.7277;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=0.93;QD=8.98;ReadPosRankSum=0.586;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPLAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261875    GT:AD:DP:GQ:PL    0/1:24,17:42:99:416,0,276
15    65877174    rs75178492    C    T    293.63    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8857;MQ=58.71;MQ0=0;MQRankSum=-0.373;QD=8.16;ReadPosRankSum=-0.16;SNPEFF_AMINO_ACID_CHANGE=L312;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65877108_65877226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf44;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431261    GT:AD:DP:GQ:PL    0/1:24,11:36:99:324,0,791
15    65916527    rs3743171    A    T    1487.52    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.743;DB;DP=92;Dels=0.0;FS=4.117;HRun=1;HaplotypeScore=5.2607;MQ=59.04;MQ0=0;MQRankSum=0.872;QD=16.17;ReadPosRankSum=0.983;SNPEFF_AMINO_ACID_CHANGE=T37S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65916293_65918308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC24A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261892    GT:AD:DP:GQ:PL    0/1:43,49:92:99:1518,0,1336
15    65956602    rs67680918    TAAA    T    468.99    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.802;DB;DP=21;FS=0.0;HRun=5;HaplotypeScore=80.7371;IndelType=D;MQ=57.64;MQ0=0;MQRankSum=0.249;QD=22.33;ReadPosRankSum=-0.675;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SLC24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537259    GT:AD:DP:GQ:PL    0/1:9,12:21:99:508,0,560
15    65959729    rs12591647    T    C    1308.54    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.359;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.816;QD=17.45;ReadPosRankSum=0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:33,42:75:99:1339,0,1073
15    65960195    rs6494531    A    G    756.70    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=61;Dels=0.0;FS=2.83;HRun=1;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=1.62;QD=12.4;ReadPosRankSum=-0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:33,27:61:99:787,0,1162
15    65963947    .    C    T    147.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.44;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:4,5:9:99:178,0,138
15    65982628    rs34408949    AC    A    791.07    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=5.529;DB;DP=45;FS=0.0;HRun=1;HaplotypeScore=186.9854;IndelType=D;MQ=59.49;MQ0=0;MQRankSum=-2.373;QD=17.58;ReadPosRankSum=1.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:22,23:45:99:830,0,919
15    65982677    rs28513670    A    G    1456.38    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.74;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=1.098;QD=15.66;ReadPosRankSum=-2.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:44,49:93:99:1486,0,1552
15    65994034    rs16948954    T    C    946.60    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=57;Dels=0.0;FS=1.738;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.535;QD=16.61;ReadPosRankSum=0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:28,29:57:99:977,0,903
15    65994602    rs28377658    A    G    375.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.292;DB;DP=24;Dels=0.0;FS=2.793;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-1.969;QD=15.63;ReadPosRankSum=-0.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:8,16:24:99:405,0,261
15    65994733    rs17810074    C    T    1189.33    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=88;Dels=0.0;FS=2.831;HRun=3;HaplotypeScore=0.9973;MQ=59.53;MQ0=0;MQRankSum=0.599;QD=13.52;ReadPosRankSum=-0.403;SNPEFF_AMINO_ACID_CHANGE=V780;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_65994643_65994849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:46,42:88:99:1219,0,1408
15    65995082    rs16948959    C    G    555.90    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.769;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=12.35;ReadPosRankSum=-1.321;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:26,19:45:99:586,0,951
15    65998702    rs7176565    T    C    61.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.19;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:3,3:6:91.12:91,0,98
15    66007972    rs28687655    A    T    440.91    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.43;DB;DP=41;Dels=0.0;FS=1.986;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.04;QD=10.75;ReadPosRankSum=-0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:25,16:41:99:471,0,862
15    66010379    rs2060454    C    T    577.24    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.697;DB;DP=34;Dels=0.0;FS=8.305;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.472;QD=16.98;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:14,20:34:99:607,0,372
15    66023799    rs28556680    G    T    37.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.47;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,109
15    66025010    rs11071849    G    A    283.22    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.108;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.027;QD=11.33;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:14,11:25:99:313,0,490
15    66044499    rs8033578    A    G    75.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
15    66044551    rs10431765    G    A    196.07    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9983;MQ=58.63;MQ0=0;MQRankSum=-0.762;QD=21.79;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:2,7:9:33.97:226,0,34
15    66044604    rs8033741    A    T    578.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.2;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:611,51,0
15    66063428    rs2727099    C    T    152.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=12.68;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:6,6:12:99:182,0,215
15    66063531    rs2727100    G    A    1104.84    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=3.948;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=1.084;QD=19.05;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431932    GT:AD:DP:GQ:PL    0/1:21,37:58:99:1135,0,563
15    66249807    rs333569    G    T    722.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288745    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:756,57,0
15    66257236    rs3840018    C    CA    182.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=18.1941;IndelType=I;MQ=62.13;MQ0=0;QD=36.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469917    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:225,15,0
15    66257408    rs333550    T    C    657.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=H21R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_66257246_66257458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455812    GT:AD:DP:GQ:PL    1/1:0,22:22:54.15:690,54,0
15    66274690    rs551474    T    C    115.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_AMINO_ACID_CHANGE=A102;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_66274580_66274826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288745    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:148,12,0
15    66411441    rs16949528    C    T    480.36    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.845;DB;DP=31;Dels=0.0;FS=3.776;HRun=1;HaplotypeScore=0.9987;MQ=59.4;MQ0=0;MQRankSum=1.075;QD=15.5;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=S95N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_66411424_66411524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEGF11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360698    GT:AD:DP:GQ:PL    0/1:12,19:31:99:510,0,385
15    66601254    rs8025589    G    T    383.80    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.976;DB;DP=39;Dels=0.0;FS=2.673;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=9.84;ReadPosRankSum=-0.542;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525134    GT:AD:DP:GQ:PL    0/1:25,14:39:99:414,0,853
15    66604032    rs28616181    C    T    1296.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.04;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=32.4;ReadPosRankSum=-0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525134    GT:AD:DP:GQ:PL    1/1:1,39:40:59.69:1329,60,0
15    66612818    rs750295    A    C    437.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319194    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:471,36,0
15    66618342    rs3803412    A    G    1928.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.323;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9973;MQ=59.3;MQ0=0;MQRankSum=1.086;QD=29.22;ReadPosRankSum=0.323;SNPEFF_AMINO_ACID_CHANGE=D531G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_66618169_66618702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319194    GT:AD:DP:GQ:PL    1/1:1,65:66:99:1961,116,0
15    66629666    rs28537939    C    A    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=9.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIS3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319194    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:69,6,0
15    66641189    rs2899717    G    A    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261881    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
15    66643979    rs56040501    C    CT    480.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=14;HaplotypeScore=137.8705;IndelType=I;MQ=60.75;MQ0=0;QD=15.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261881    GT:AD:DP:GQ:PL    1/1:14,17:31:59.98:523,60,0
15    66644521    rs9806123    C    G    1113.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_AMINO_ACID_CHANGE=R53P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_66644467_66644545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261881    GT:AD:DP:GQ:PL    1/1:0,37:37:81.27:1147,81,0
15    66645341    rs28614039    A    G    615.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIPIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261881    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:649,48,0
15    66672021    rs55652624    T    C    3751.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.71;MQ0=0;QD=32.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-352G18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489563    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3751,289,0
15    66727597    rs16949924    G    C    1987.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=33.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307102    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2020,168,0
15    66735551    rs6494573    C    T    581.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307102    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:615,45,0
15    66787518    rs74765803    C    T    40.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307102    GT:AD:DP:GQ:PL    0/1:2,2:4:59.26:70,0,59
15    66791601    rs28708806    A    G    658.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.83;MQ0=0;QD=34.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432669    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:692,51,0
15    66792761    rs28706938    A    G    254.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307961    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:288,24,0
15    66793480    rs11071895    C    T    969.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.18;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307961    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1002,78,0
15    66793677    rs12101954    G    C    847.54    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=61;Dels=0.0;FS=24.539;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=13.89;ReadPosRankSum=0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307961    GT:AD:DP:GQ:PL    0/1:36,25:61:99:878,0,1052
15    66794037    rs10851759    A    C    920.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=38.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307961    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:953,69,0
15    66795315    rs117657369    C    T    253.59    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.894;DB;DP=28;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.376;QD=9.06;ReadPosRankSum=1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307961    GT:AD:DP:GQ:PL    0/1:17,11:28:99:284,0,555
15    66795937    rs28673176    C    T    211.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307961    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
15    66795980    rs8043062    A    G    121.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307961    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
15    66797492    rs3087660    G    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307961    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    66801309    rs72144734    GCT    G    223.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=24.6553;IndelType=D;MQ=57.19;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZWILCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307897    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:265,18,0
15    66806308    rs4238406    C    T    1318.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZWILCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307897    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1352,99,0
15    66806517    rs4420479    G    A    418.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZWILCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307897    GT:AD:DP:GQ:PL    1/1:0,11:12:33.11:452,33,0
15    66815908    rs28509265    A    G    2729.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZWILCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307897    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2763,208,0
15    66816183    rs6494579    C    G    742.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZWILCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307897    GT:AD:DP:GQ:PL    1/1:0,22:22:63.11:776,63,0
15    66821174    rs6494580    G    C    877.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZWILCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307897    GT:AD:DP:GQ:PL    1/1:1,29:30:66.22:911,66,0
15    66824526    rs4488397    A    T    399.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZWILCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307897    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:433,33,0
15    67336557    rs266350    C    T    747.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC087482.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502544    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:781,57,0
15    67457335    rs1065080    A    G    3495.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.21;MQ=59.3;MQ0=0;QD=35.31;SNPEFF_AMINO_ACID_CHANGE=L103;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_67457233_67457426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327367    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3496,265,0
15    67457485    rs2289261    G    C    1635.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.157;DB;DP=56;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.7883;MQ=59.59;MQ0=0;MQRankSum=0.724;QD=29.2;ReadPosRankSum=-0.724;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327367    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1668,115,0
15    67501782    rs28693872    T    C    2742.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=5.635;DB;DP=215;Dels=0.0;FS=18.34;HRun=2;HaplotypeScore=0.9734;MQ=59.89;MQ0=0;MQRankSum=0.086;QD=12.75;ReadPosRankSum=0.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAGAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261880    GT:AD:DP:GQ:PL    0/1:119,95:215:99:2772,0,3616
15    67501977    rs28418884    C    T    355.28    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.572;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.857;QD=10.45;ReadPosRankSum=-0.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAGAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261880    GT:AD:DP:GQ:PL    0/1:20,14:34:99:385,0,729
15    67528550    rs4776907    C    T    212.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AAGAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261880    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:246,18,0
15    67629175    rs956129    G    A    183.39    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=14.11;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335894    GT:AD:DP:GQ:PL    0/1:6,7:13:99:213,0,212
15    67665566    rs34983272    A    G    134.12    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=14.9;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535744    GT:AD:DP:GQ:PL    0/1:4,5:9:99:164,0,139
15    67687397    rs4776925    C    T    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335894    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:121,9,0
15    67692502    rs7495023    T    C    1237.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.38;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=R309;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_67692452_67692643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546225    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1271,96,0
15    67757764    rs2414957    T    C    241.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335894    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
15    67768151    rs3985641    G    C    1062.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_AMINO_ACID_CHANGE=V589L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_67768034_67768156;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546225    GT:AD:DP:GQ:PL    1/1:0,31:31:84.24:1095,84,0
15    67782440    rs141893673    AGGAAAT    A    3084.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=312.1123;IndelType=D;MQ=36.88;MQ0=0;QD=71.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335894    GT:AD:DP:GQ:PL    1/1:0,43:43:99:3127,129,0
15    67818538    rs72747462    G    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342683    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    67818540    rs72747464    C    T    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342683    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
15    67872983    rs7172298    T    C    774.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000178640    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:807,60,0
15    67879418    rs28730805    G    A    231.28    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=28.91;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000178640    GT:AD:DP:GQ:PL    0/1:1,7:8:8.42:261,0,8
15    67984705    rs4343227    G    A    251.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000178640    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
15    67985720    rs66548496    TA    T    261.14    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=23.5384;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=-0.751;QD=29.02;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000178640    GT:AD:DP:GQ:PL    0/1:1,8:9:20.92:300,0,21
15    67985931    rs8034680    T    C    1530.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.14;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000178640    GT:AD:DP:GQ:PL    1/1:0,52:54:99:1563,126,0
15    68040775    rs28730809    G    A    339.83    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.113;QD=26.14;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000178640    GT:AD:DP:GQ:PL    0/1:3,10:13:79.62:370,0,80
15    68041070    rs8037011    A    G    425.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000178640    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:458,33,0
15    68124665    rs72751453    C    A    2350.12    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=7.201;DB;DP=217;DS;Dels=0.0;FS=5.345;HRun=2;HaplotypeScore=2.6113;MQ=59.89;MQ0=0;MQRankSum=-0.381;QD=10.83;ReadPosRankSum=-1.098;SNPEFF_AMINO_ACID_CHANGE=R784;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_68124612_68124686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKOR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341418    GT:AD:DP:GQ:PL    0/1:128,89:217:99:2380,0,3497
15    68124853    rs12901293    G    C    185.66    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.566;QD=16.88;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341418    GT:AD:DP:GQ:PL    0/1:3,8:11:94.03:216,0,94
15    68346549    rs11855475    T    C    74.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.89;MQ0=0;QD=24.95;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249636    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
15    68434212    rs113300929    T    TG    676.34    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.809;DB;DP=42;FS=0.0;HRun=1;HaplotypeScore=190.1877;IndelType=I;MQ=59.61;MQ0=0;MQRankSum=3.164;QD=16.1;ReadPosRankSum=-0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249636    GT:AD:DP:GQ:PL    0/1:19,23:42:99:715,0,534
15    68445752    rs8036555    G    A    288.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=36.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249636    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
15    68445912    rs11633620    T    A    3270.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=59.74;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249636    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3271,241,0
15    68468695    rs12438361    T    C    378.06    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.64;MQ0=0;MQRankSum=-1.917;QD=12.2;ReadPosRankSum=0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249636    GT:AD:DP:GQ:PL    0/1:16,15:31:99:408,0,561
15    68486603    rs146763730    G    T    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354678    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
15    68492028    rs11071986    G    A    643.03    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.128;DB;DP=55;Dels=0.0;FS=2.623;HRun=0;HaplotypeScore=2.5165;MQ=60.0;MQ0=0;MQRankSum=-1.058;QD=11.69;ReadPosRankSum=0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALML4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395463    GT:AD:DP:GQ:PL    0/1:30,25:55:99:673,0,861
15    68501710    rs11632516    C    T    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249806    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,106
15    68510770    rs8025947    A    G    417.64    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.023;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.023;QD=18.16;ReadPosRankSum=-1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249806    GT:AD:DP:GQ:PL    0/1:10,13:23:99:448,0,302
15    68571164    rs11630865    G    A    72.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.29;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FEM1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306917    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,149
15    68583175    rs6494729    T    C    3465.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=N493;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_68581945_68588203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FEM1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306917    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3465,259,0
15    68599875    rs2271721    C    T    440.60    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.206;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.049;QD=11.59;ReadPosRankSum=0.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    0/1:24,14:38:99:471,0,723
15    68603625    rs898591    C    T    246.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.44;SNPEFF_AMINO_ACID_CHANGE=V1030;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_68603625_68603741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423218    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:280,21,0
15    68605067    rs4776394    A    C    211.12    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.529;QD=12.42;ReadPosRankSum=1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    0/1:9,8:17:99:241,0,289
15    68605169    rs4777035    G    A    485.01    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=32;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.178;QD=15.16;ReadPosRankSum=-1.166;SNPEFF_AMINO_ACID_CHANGE=P607L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_68605111_68605201;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535491    GT:AD:DP:GQ:PL    0/1:15,17:32:99:515,0,456
15    68606109    rs2271727    C    T    176.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=12.59;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    0/1:7,7:14:99:206,0,245
15    68609833    rs1516871    T    C    236.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:270,24,0
15    68612385    rs35808090    C    A    213.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
15    68618961    rs2271722    T    C    691.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,24:24:57.16:725,57,0
15    68623187    rs56095343    T    C    34.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.89;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    0/1:5,2:7:64.22:64,0,182
15    68624175    rs7167822    C    T    992.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1025,75,0
15    68624290    rs2292745    G    A    653.43    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=46;Dels=0.0;FS=8.695;HRun=0;HaplotypeScore=0.9789;MQ=59.5;MQ0=0;MQRankSum=-0.198;QD=14.2;ReadPosRankSum=0.176;SNPEFF_AMINO_ACID_CHANGE=D194;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_68624197_68624400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535491    GT:AD:DP:GQ:PL    0/1:25,21:46:99:683,0,728
15    68624396    rs7168069    A    C    965.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_AMINO_ACID_CHANGE=L159R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_68624197_68624400;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535491    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:999,81,0
15    68624641    rs6494733    A    C    599.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,18:18:51.12:632,51,0
15    68628143    rs2306023    C    T    712.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.41;SNPEFF_AMINO_ACID_CHANGE=R439;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_68628035_68628183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,26:26:57.17:746,57,0
15    68631740    rs2125998    A    G    110.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
15    68641362    rs67978927    AG    A    111.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=7;HaplotypeScore=15.0247;IndelType=D;MQ=60.0;MQ0=0;QD=18.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:1,5:6:15.03:153,15,0
15    68643439    rs2279101    G    A    75.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
15    68649587    rs12907890    G    A    4317.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.91;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=N217;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_68649489_68649637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4317,325,0
15    68656960    rs2306012    A    G    66.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:98,9,0
15    68661273    rs11072010    C    T    74.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:106,9,0
15    68695105    rs73433950    C    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    0/1:1,2:3:34.29:74,0,34
15    68695165    rs73433952    C    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315757    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
15    68987341    rs7359311    A    G    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
15    69003788    rs71402285    G    A    82.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=13.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    0/1:2,4:6:59.73:113,0,60
15    69003871    rs3736272    G    T    150.15    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.159;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=5.36;ReadPosRankSum=0.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    0/1:21,7:28:99:180,0,630
15    69007656    rs1542746    T    G    1747.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1780,135,0
15    69011119    rs33913544    C    T    295.88    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=2.02;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.38;MQ0=0;MQRankSum=-0.111;QD=8.0;ReadPosRankSum=-1.702;SNPEFF_AMINO_ACID_CHANGE=I345;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_69011037_69011149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540068    GT:AD:DP:GQ:PL    0/1:24,13:37:99:326,0,680
15    69011255    rs1491641    A    G    158.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
15    69011389    rs1491640    A    C    563.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0463;MQ=58.95;MQ0=0;QD=25.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    1/1:0,17:22:48.13:597,48,0
15    69011394    rs1491639    C    T    1034.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.0463;MQ=59.17;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1067,81,0
15    69011918    rs55921407    C    T    607.66    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.599;DB;DP=39;Dels=0.0;FS=1.958;HRun=0;HaplotypeScore=0.8321;MQ=59.41;MQ0=0;MQRankSum=0.365;QD=15.58;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    0/1:19,20:39:99:638,0,494
15    69017999    rs12914115    G    A    244.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261861    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
15    69112946    rs4777089    C    A    146.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=1.5449;MQ=42.5;MQ0=0;QD=7.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANP32A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358235    GT:AD:DP:GQ:PL    1/1:7,13:20:18.02:179,18,0
15    69112971    rs35802209    G    GCA    752.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.898;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=299.5007;IndelType=I;MQ=51.17;MQ0=0;MQRankSum=0.116;QD=22.12;ReadPosRankSum=-0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANP32A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358235    GT:AD:DP:GQ:PL    1/1:14,18:34:7.43:793,7,0
15    69238445    rs3743093    G    A    1165.26    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.661;DB;DP=75;Dels=0.0;FS=2.019;HRun=0;HaplotypeScore=0.9578;MQ=59.75;MQ0=0;MQRankSum=0.117;QD=15.54;ReadPosRankSum=0.728;SNPEFF_AMINO_ACID_CHANGE=G191E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_69237938_69239150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPESP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310673    GT:AD:DP:GQ:PL    0/1:33,42:75:99:1195,0,1032
15    69325581    rs311893    C    T    273.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.43;SNPEFF_AMINO_ACID_CHANGE=C238;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_69325383_69325617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455873    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:307,24,0
15    69327825    rs311889    C    T    599.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_AMINO_ACID_CHANGE=T294;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_69327694_69327847;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455873    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:633,45,0
15    69327998    rs2277554    C    T    884.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388866    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:918,69,0
15    69328226    rs12907196    C    T    1290.17    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=2.538;DB;DP=89;Dels=0.0;FS=2.868;HRun=1;HaplotypeScore=0.7887;MQ=59.27;MQ0=0;MQRankSum=0.336;QD=14.5;ReadPosRankSum=-0.693;SNPEFF_AMINO_ACID_CHANGE=L345F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_69328098_69328276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455873    GT:AD:DP:GQ:PL    0/1:41,48:89:99:1320,0,1241
15    69329216    rs2654995    T    C    77.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388866    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:109,9,0
15    69329624    rs2246273    A    G    169.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388866    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
15    69330948    rs446269    G    A    119.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388866    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
15    69347593    rs311905    G    A    835.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388866    GT:AD:DP:GQ:PL    1/1:0,27:29:63.21:869,63,0
15    69349087    rs311906    T    C    737.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=27.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448182    GT:AD:DP:GQ:PL    1/1:0,27:27:63.16:770,63,0
15    69373215    .    G    T    219.09    FSFilter60    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.562;DP=85;Dels=0.0;FS=146.889;HRun=2;HaplotypeScore=5.3825;MQ=50.29;MQ0=0;MQRankSum=-4.537;QD=2.58;ReadPosRankSum=-0.013;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00277;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415504    GT:AD:DP:GQ:PL    0/1:51,34:85:99:249,0,1646
15    69553728    rs8023271    C    A    1104.88    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=65;Dels=0.0;FS=2.97;HRun=0;HaplotypeScore=0.9933;MQ=59.36;MQ0=0;MQRankSum=0.218;QD=17.0;ReadPosRankSum=0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLCE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261858    GT:AD:DP:GQ:PL    0/1:27,38:65:99:1135,0,736
15    69561518    rs3865014    G    A    8368.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=240;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.71;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=V597I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_69560559_69564538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLCE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261858    GT:AD:DP:GQ:PL    1/1:0,239:240:99:8369,617,0
15    69676892    rs11632206    A    G    307.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.07;MQ0=0;QD=21.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAQR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340965    GT:AD:DP:GQ:PL    1/1:0,14:14:33.06:341,33,0
15    69676904    rs59560663    C    T    459.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.76;MQ0=0;QD=24.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAQR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340965    GT:AD:DP:GQ:PL    1/1:0,19:19:45.09:493,45,0
15    69676944    rs11637493    T    C    774.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=47.89;MQ0=0;QD=28.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAQR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340965    GT:AD:DP:GQ:PL    1/1:0,27:27:66.17:807,66,0
15    69681833    rs937722    A    G    279.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAQR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340965    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:312,24,0
15    69696249    rs1394415    T    C    631.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAQR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340965    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:664,54,0
15    69696370    rs3743097    T    C    89.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAQR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340965    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
15    69709686    rs3759825    G    A    1320.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260363    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1353,99,0
15    69715263    rs7180230    C    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260363    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
15    69728949    rs3825858    A    G    1687.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=59.55;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=P298;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_69728903_69729061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537891    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1721,138,0
15    69732483    rs4776448    G    A    422.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260363    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:455,33,0
15    69732736    rs937724    C    T    1553.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=32.36;SNPEFF_AMINO_ACID_CHANGE=T476;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_69732647_69732826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537891    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1586,117,0
15    69745852    rs56071524    A    G    95.91    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=6.85;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395392    GT:AD:DP:GQ:PL    0/1:9,5:14:99:126,0,323
15    69747406    rs75215491    G    T    662.97    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.688;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6437;MQ=59.65;MQ0=0;MQRankSum=0.045;QD=12.51;ReadPosRankSum=-0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395392    GT:AD:DP:GQ:PL    0/1:29,24:53:99:693,0,915
15    69747675    rs1463911    A    T    323.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395392    GT:AD:DP:GQ:PL    1/1:0,15:15:33.08:356,33,0
15    70342714    rs3215108    TG    T    162.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=5;HaplotypeScore=16.6498;IndelType=D;MQ=54.43;MQ0=0;QD=23.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542329    GT:AD:DP:GQ:PL    1/1:1,6:7:18.05:204,18,0
15    70344616    rs3743310    A    G    266.06    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=12.09;ReadPosRankSum=0.601;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542329    GT:AD:DP:GQ:PL    0/1:13,9:22:99:296,0,458
15    70345626    rs1057865    C    T    260.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=18.63;ReadPosRankSum=-0.715;SNPEFF_AMINO_ACID_CHANGE=T568;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_70345566_70345713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539550    GT:AD:DP:GQ:PL    0/1:6,8:14:99:291,0,188
15    70345871    rs3743312    G    A    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542329    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:75,0,33
15    70346923    rs2228178    C    T    309.98    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.969;DB;DP=32;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=0.021;QD=9.69;ReadPosRankSum=-0.868;SNPEFF_AMINO_ACID_CHANGE=S490;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_70346777_70347024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539550    GT:AD:DP:GQ:PL    0/1:19,12:32:99:340,0,546
15    70347303    rs661936    A    G    175.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542329    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:208,18,0
15    70347362    rs4777227    C    A    361.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=R205L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_70347346_70347816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542329    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:394,30,0
15    70348468    rs3817045    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317509    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
15    70348523    rs2270871    G    C    350.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317509    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:384,30,0
15    70349744    rs8036209    T    C    84.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317509    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
15    70350457    rs2291982    C    A    609.98    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.417;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-2.249;QD=17.94;ReadPosRankSum=1.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317509    GT:AD:DP:GQ:PL    0/1:10,24:34:99:640,0,325
15    70351649    rs7176098    C    A    320.73    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.765;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.246;QD=12.83;ReadPosRankSum=-0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317509    GT:AD:DP:GQ:PL    0/1:14,11:25:99:351,0,468
15    70351788    rs2133977    T    C    1110.94    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=2.449;DB;DP=90;Dels=0.0;FS=1.795;HRun=2;HaplotypeScore=2.7088;MQ=59.28;MQ0=0;MQRankSum=0.95;QD=12.34;ReadPosRankSum=0.149;SNPEFF_AMINO_ACID_CHANGE=G186;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_70351749_70351799;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539550    GT:AD:DP:GQ:PL    0/1:49,40:90:99:1141,0,1419
15    70368432    rs2291986    T    C    1467    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=106;Dels=0.0;FS=0.809;HRun=0;HaplotypeScore=1.8255;MQ=60.0;MQ0=0;MQRankSum=-1.004;QD=13.84;ReadPosRankSum=0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317509    GT:AD:DP:GQ:PL    0/1:55,51:106:99:1497,0,1772
15    70958937    rs2241530    G    A    157.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=19.7;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322954    GT:AD:DP:GQ:PL    0/1:2,6:8:54.49:188,0,54
15    70960068    rs934005    G    A    1392.22    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.693;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3589;MQ=59.4;MQ0=0;MQRankSum=-1.318;QD=12.0;ReadPosRankSum=2.118;SNPEFF_AMINO_ACID_CHANGE=Y876;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_70959063_70961801;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UACA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539319    GT:AD:DP:GQ:PL    0/1:65,51:116:99:1422,0,1910
15    70991925    rs4776525    G    C    797.72    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.687;DB;DP=69;Dels=0.0;FS=6.633;HRun=0;HaplotypeScore=1.6643;MQ=59.67;MQ0=0;MQRankSum=0.852;QD=11.56;ReadPosRankSum=0.448;SNPEFF_AMINO_ACID_CHANGE=T38;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_70991866_70991999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UACA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379983    GT:AD:DP:GQ:PL    0/1:34,35:69:99:828,0,999
15    71125093    rs3825970    G    A    246.17    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=0.486;DB;DP=31;Dels=0.0;FS=1.938;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.148;QD=7.94;ReadPosRankSum=-2.388;SNPEFF_AMINO_ACID_CHANGE=C258;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_71123891_71125455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299213    GT:AD:DP:GQ:PL    0/1:21,10:31:99:276,0,660
15    71125204    rs1549317    A    G    316.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=12.68;ReadPosRankSum=1.025;SNPEFF_AMINO_ACID_CHANGE=F221;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_71123891_71125455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299213    GT:AD:DP:GQ:PL    0/1:10,15:25:99:347,0,329
15    71175296    rs1528828    A    G    381.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544974    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:414,30,0
15    71184278    rs2959174    G    T    100.38    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.597;QD=8.37;ReadPosRankSum=-0.278;SNPEFF_AMINO_ACID_CHANGE=R112;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_71184183_71185098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249861    GT:AD:DP:GQ:PL    0/1:7,5:12:99:130,0,232
15    71184495    rs2955035    A    G    186.09    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=18.61;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=G39;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_71184183_71185098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249861    GT:AD:DP:GQ:PL    0/1:3,7:10:81.12:216,0,81
15    71185837    rs2955037    G    A    263.48    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=26.35;ReadPosRankSum=-0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260382    GT:AD:DP:GQ:PL    0/1:2,8:10:48.93:293,0,49
15    71185853    rs3840844    CTT    C    221.54    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.511;DB;DP=15;FS=0.0;HRun=12;HaplotypeScore=89.3554;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.041;QD=14.77;ReadPosRankSum=1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260382    GT:AD:DP:GQ:PL    0/1:4,10:15:99:261,0,130
15    71276480    rs3834543    GCAA    G    512.91    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=3.586;DB;DP=39;FS=3.216;HRun=0;HaplotypeScore=150.8427;IndelType=D;MQ=57.88;MQ0=0;MQRankSum=-0.051;QD=13.15;ReadPosRankSum=0.421;SNPEFF_AMINO_ACID_CHANGE=Q308-;SNPEFF_CODON_CHANGE=caa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_15_71276433_71276596;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443425    GT:AD:DP:GQ:PL    0/1:25,14:39:99:552,0,1233
15    71534790    rs11633459    C    T    234.26    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=26.03;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261862    GT:AD:DP:GQ:PL    0/1:2,7:9:58.20:264,0,58
15    71548937    rs4777350    T    C    2824.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261862    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2857,208,0
15    72023422    rs2277540    C    T    281.33    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.674;DB;DP=19;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.674;QD=14.81;ReadPosRankSum=-0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261862    GT:AD:DP:GQ:PL    0/1:9,10:19:99:311,0,286
15    72037610    rs2291994    G    A    882.72    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.451;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=13.58;ReadPosRankSum=-0.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261862    GT:AD:DP:GQ:PL    0/1:34,31:65:99:913,0,1145
15    72040774    rs1872056    C    T    217.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.694;QD=8.06;ReadPosRankSum=0.386;SNPEFF_AMINO_ACID_CHANGE=C392;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_72040760_72040933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357769    GT:AD:DP:GQ:PL    0/1:18,9:27:99:248,0,554
15    72050163    rs2625533    C    G    420.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261862    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:453,33,0
15    72073003    rs2291275    C    T    791.58    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.777;DB;DP=62;Dels=0.0;FS=7.038;HRun=0;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;MQRankSum=1.464;QD=12.77;ReadPosRankSum=-1.767;SNPEFF_AMINO_ACID_CHANGE=P130;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_72072881_72073273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345002    GT:AD:DP:GQ:PL    0/1:32,30:62:99:822,0,893
15    72073189    rs17811309    G    A    1722.20    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.136;DB;DP=109;Dels=0.0;FS=5.525;HRun=0;HaplotypeScore=0.9933;MQ=59.66;MQ0=0;MQRankSum=-0.826;QD=15.8;ReadPosRankSum=0.596;SNPEFF_AMINO_ACID_CHANGE=R192;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_72072881_72073273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THSD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345002    GT:AD:DP:GQ:PL    0/1:51,58:109:99:1752,0,1632
15    72105928    rs11351249    AC    A    1782.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=5;HaplotypeScore=156.9817;IndelType=D;MQ=60.34;MQ0=0;QD=31.83;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_15_72105729_72105929;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2E3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000326995    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1824,162,0
15    72170762    rs6494974    C    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356056    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    72186286    rs2128112    A    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356056    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    72189606    rs6494976    C    T    286.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261864    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:319,24,0
15    72191073    rs2415128    T    C    4247.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_AMINO_ACID_CHANGE=R1238;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_72189802_72191373;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444904    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4248,316,0
15    72191266    rs2415129    C    T    6552.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=186;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7823;MQ=59.75;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=G1174E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_72189802_72191373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444904    GT:AD:DP:GQ:PL    1/1:0,186:186:99:6553,494,0
15    72286995    rs79934816    T    C    375.01    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.845;DB;DP=44;Dels=0.0;FS=2.827;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.085;QD=8.52;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261864    GT:AD:DP:GQ:PL    0/1:27,17:44:99:405,0,935
15    72300031    rs3759820    A    C    171.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261864    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
15    72300471    rs12148078    G    C    173.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261864    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
15    72302894    rs2957742    G    C    286.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261864    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
15    72431883    rs7175792    G    C    4037.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.77;MQ0=0;QD=39.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340912    GT:AD:DP:GQ:PL    1/1:0,102:102:99:4037,292,0
15    72432583    rs930871    A    G    1416.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_AMINO_ACID_CHANGE=T207A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_72431918_72433304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340912    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1449,105,0
15    72454729    rs897731    C    G    1245.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309731    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1279,99,0
15    72457551    rs2959944    A    G    301.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=53.36;MQ0=0;QD=13.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309731    GT:AD:DP:GQ:PL    1/1:0,22:22:33.01:334,33,0
15    72459847    rs8023788    A    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309731    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
15    72460339    rs8025939    T    A    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309731    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
15    72462165    rs11072348    A    C    1773.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309731    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1807,132,0
15    72492779    rs8040828    C    A    535.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319622    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:568,42,0
15    72543656    rs2959904    T    C    400.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.1447;MQ=53.95;MQ0=0;QD=25.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260376    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:433,36,0
15    72545876    rs1426166    T    C    653.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260376    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:687,54,0
15    72546765    rs2912227    A    G    1282.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260376    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1315,99,0
15    72551712    rs11637611    C    T    408.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260376    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:442,33,0
15    72556799    rs11072352    G    A    644.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260376    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:677,51,0
15    72557955    rs1426170    T    C    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260376    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
15    72637795    rs4777502    T    C    618.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=E506;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_72637787_72637891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268097    GT:AD:DP:GQ:PL    1/1:0,19:19:51.13:651,51,0
15    72638892    rs1800431    T    C    3932.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.11;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=I263V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_72638868_72639051;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429918    GT:AD:DP:GQ:PL    1/1:0,119:120:99:3932,298,0
15    72672037    rs6495003    A    G    246.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=30.86;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268097    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
15    72859047    rs11403578    A    AT    798.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.238;DB;DP=29;FS=0.0;HRun=9;HaplotypeScore=83.9279;IndelType=I;MQ=59.58;MQ0=0;MQRankSum=-1.362;QD=27.52;ReadPosRankSum=-0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299305    GT:AD:DP:GQ:PL    1/1:3,26:29:56.41:840,56,0
15    72864578    rs34776818    AT    A    97.51    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.41;DB;DP=43;FS=6.435;HRun=18;HaplotypeScore=382.3669;IndelType=D;MQ=55.35;MQ0=1;MQRankSum=1.41;QD=2.22;ReadPosRankSum=2.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299305    GT:AD:DP:GQ:PL    0/1:17,18:43:38.41:137,0,38
15    72879653    rs139334001    A    ATTG    1030.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=55.304;IndelType=I;MQ=54.87;MQ0=0;QD=54.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARIH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299305    GT:AD:DP:GQ:PL    1/1:2,17:19:48.16:1073,48,0
15    72957467    rs146159669    G    T    94.78    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.879;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=24.74;MQ0=4;MQRankSum=-0.758;QD=3.65;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421285    GT:AD:DP:GQ:PL    0/1:14,12:26:99:125,0,325
15    72957500    .    G    A    66.84    MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.19;MQ0=10;MQRankSum=-1.312;QD=2.91;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421285    GT:AD:DP:GQ:PL    0/1:16,7:23:96.83:97,0,213
15    72958267    rs181034191    G    A    416    MQFilter40;QDFilter2    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.089;DB;DP=223;DS;Dels=0.0;FS=1.461;HRun=0;HaplotypeScore=3.1547;MQ=27.66;MQ0=10;MQRankSum=4.201;QD=1.86;ReadPosRankSum=0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421285    GT:AD:DP:GQ:PL    0/1:181,42:223:99:446,0,4047
15    72958777    rs189329606    A    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.11;MQ0=1;QD=17.07;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421285    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:100,9,0
15    72987588    rs4777527    G    T    2144.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268057    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2178,166,0
15    73002035    rs8033604    G    A    1569.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268057    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1603,120,0
15    73007893    rs730180    G    A    236.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268057    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:269,21,0
15    73021855    rs6495015    T    C    89.50    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.85;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=5.59;ReadPosRankSum=-0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268057    GT:AD:DP:GQ:PL    0/1:12,4:16:99:119,0,409
15    73023725    .    G    T    79.68    QDFilter2    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.365;DP=55;Dels=0.0;FS=54.498;HRun=2;HaplotypeScore=2.531;MQ=51.45;MQ0=0;MQRankSum=-3.29;QD=1.45;ReadPosRankSum=-0.038;SNPEFF_AMINO_ACID_CHANGE=C252F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73023646_73023798;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539603    GT:AD:DP:GQ:PL    0/1:36,19:55:99:110,0,1186
15    73023937    rs12914333    T    C    2429.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.53;MQ0=0;QD=30.76;SNPEFF_AMINO_ACID_CHANGE=F130;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73023896_73024067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542334    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2463,196,0
15    73024181    rs9806635    G    A    419.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268057    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:452,33,0
15    73027478    rs2277598    T    C    489.40    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.514;DB;DP=48;Dels=0.0;FS=6.438;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.427;QD=10.2;ReadPosRankSum=-0.142;SNPEFF_AMINO_ACID_CHANGE=I182T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73027454_73027523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542334    GT:AD:DP:GQ:PL    0/1:29,19:48:99:519,0,841
15    73028375    rs12324395    G    A    695.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268057    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:728,54,0
15    73029068    rs117852179    G    C    563.38    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=5.319;DB;DP=46;Dels=0.0;FS=3.34;HRun=1;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=0.012;QD=12.25;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268057    GT:AD:DP:GQ:PL    0/1:26,20:46:99:593,0,663
15    73044575    rs9460    G    A    58.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=9.77;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331065    GT:AD:DP:GQ:PL    0/1:3,3:6:88.63:89,0,107
15    73044594    rs148487929    C    A    77.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.94;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331065    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,110
15    73047881    rs79189970    G    A    394.03    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.688;DB;DP=33;Dels=0.0;FS=4.451;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=-0.153;QD=11.94;ReadPosRankSum=1.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311669    GT:AD:DP:GQ:PL    0/1:19,13:33:99:424,0,600
15    73048529    rs2304598    G    A    279.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=52.52;MQ0=0;MQRankSum=-0.749;QD=11.16;ReadPosRankSum=-0.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311669    GT:AD:DP:GQ:PL    0/1:15,10:25:99:309,0,490
15    73048556    rs189660095    G    A    384.68    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.757;DB;DP=40;Dels=0.0;FS=9.039;HRun=1;HaplotypeScore=0.0;MQ=44.43;MQ0=1;MQRankSum=-0.274;QD=9.62;ReadPosRankSum=-0.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311669    GT:AD:DP:GQ:PL    0/1:24,16:40:99:415,0,588
15    73050222    rs4777534    C    T    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.89;MQ0=0;MQRankSum=0.0;QD=9.5;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311669    GT:AD:DP:GQ:PL    0/1:2,2:4:62.53:68,0,63
15    73050330    rs190012856    G    A    330.81    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=57.49;MQ0=0;MQRankSum=1.592;QD=17.41;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311669    GT:AD:DP:GQ:PL    0/1:9,10:19:99:361,0,268
15    73052840    rs8024644    T    C    763.68    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.66;MQ0=0;MQRankSum=-1.436;QD=11.23;ReadPosRankSum=-0.805;SNPEFF_AMINO_ACID_CHANGE=K103R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73052748_73052868;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443764    GT:AD:DP:GQ:PL    0/1:37,31:68:99:794,0,1283
15    73052845    rs8023358    A    G    798.74    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=3.879;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.67;MQ0=0;MQRankSum=0.32;QD=11.58;ReadPosRankSum=-1.379;SNPEFF_AMINO_ACID_CHANGE=G101;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73052748_73052868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443764    GT:AD:DP:GQ:PL    0/1:38,31:69:99:829,0,1256
15    73067234    rs11634630    T    C    1859.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.437;MQ=59.69;MQ0=0;QD=30.99;SNPEFF_AMINO_ACID_CHANGE=A146;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73067213_73067438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADPGK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311669    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1893,138,0
15    73415367    rs2010793    A    G    42.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:73,0,23
15    73528937    rs747873    T    C    443.37    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.99;DB;DP=30;Dels=0.0;FS=5.539;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=14.78;ReadPosRankSum=-1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    0/1:11,19:30:99:473,0,384
15    73541513    rs3736510    A    G    483.13    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.705;QD=14.64;ReadPosRankSum=0.235;SNPEFF_AMINO_ACID_CHANGE=K311;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73541401_73541549;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379842    GT:AD:DP:GQ:PL    0/1:18,15:33:99:513,0,583
15    73545732    rs2623989    T    C    376.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9497;MQ=54.45;MQ0=0;QD=15.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    1/1:4,20:24:33.09:409,33,0
15    73551250    rs2251205    A    G    457.56    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.268;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8336;MQ=59.04;MQ0=0;MQRankSum=0.171;QD=15.78;ReadPosRankSum=-1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    0/1:13,16:29:99:488,0,382
15    73564881    rs1131854    C    T    223.48    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.033;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.181;QD=7.45;ReadPosRankSum=-1.131;SNPEFF_AMINO_ACID_CHANGE=S703;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73564796_73564903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379842    GT:AD:DP:GQ:PL    0/1:21,9:30:99:253,0,525
15    73566942    rs497539    G    A    1186.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.41;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    1/1:0,33:33:96.29:1219,96,0
15    73567137    .    CT    C    42.24    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DP=45;FS=0.0;HRun=16;HaplotypeScore=413.5678;IndelType=D;MQ=51.01;MQ0=0;MQRankSum=0.185;QD=0.94;ReadPosRankSum=1.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    0/1:36,7:45:81.27:81,0,374
15    73581444    rs489531    A    G    239.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.933;QD=13.33;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    0/1:8,10:18:99:270,0,213
15    73590579    rs2292915    C    T    267.67    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=26.77;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    0/1:2,8:10:50.70:298,0,51
15    73595089    rs11448348    T    TA    281.80    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=27.2361;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=-0.271;QD=20.13;ReadPosRankSum=-1.855;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261908    GT:AD:DP:GQ:PL    0/1:6,8:14:99:321,0,156
15    73614834    rs529004    T    C    299.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=P1200;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73612200_73616290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261917    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:333,24,0
15    73616635    rs481579    T    C    432.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=27.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261917    GT:AD:DP:GQ:PL    1/1:0,16:16:42.09:465,42,0
15    73621986    rs139590882    G    A    513.58    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=39;Dels=0.0;FS=1.289;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.323;QD=13.17;ReadPosRankSum=-0.675;SNPEFF_AMINO_ACID_CHANGE=Y506;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73621914_73622132;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261917    GT:AD:DP:GQ:PL    0/1:17,21:39:99:544,0,497
15    73832623    rs12442903    C    T    142.83    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.85;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331090    GT:AD:DP:GQ:PL    0/1:3,5:8:96.53:173,0,97
15    73848808    rs922687    A    C    737.23    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.756;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=26.33;ReadPosRankSum=-0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345330    GT:AD:DP:GQ:PL    0/1:6,22:28:99:767,0,168
15    73994806    rs7173448    C    T    211.67    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.692;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.54;MQ0=0;MQRankSum=0.139;QD=8.47;ReadPosRankSum=-1.525;SNPEFF_AMINO_ACID_CHANGE=P97L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73994596_73994934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318424    GT:AD:DP:GQ:PL    0/1:15,10:25:99:242,0,431
15    73994847    rs7173476    C    A    90.85    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=18;Dels=0.0;FS=2.246;HRun=0;HaplotypeScore=0.9159;MQ=51.34;MQ0=0;MQRankSum=0.369;QD=5.05;ReadPosRankSum=1.001;SNPEFF_AMINO_ACID_CHANGE=R111S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73994596_73994934;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318424    GT:AD:DP:GQ:PL    0/1:12,5:18:99:121,0,331
15    73995165    rs111801073    A    C    42.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=43.38;MQ0=1;MQRankSum=0.678;QD=3.54;ReadPosRankSum=-0.678;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73995113_73995427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537340    GT:AD:DP:GQ:PL    0/1:8,4:12:72.50:72,0,222
15    73995173    rs11574479    C    T    174.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.18;MQ0=1;MQRankSum=-0.244;QD=12.46;ReadPosRankSum=-1.788;SNPEFF_AMINO_ACID_CHANGE=T14M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73995113_73995427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537340    GT:AD:DP:GQ:PL    0/1:7,7:14:99:204,0,143
15    73995431    rs11574480    G    T    173.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.663;QD=12.43;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318424    GT:AD:DP:GQ:PL    0/1:7,7:14:99:204,0,203
15    73996066    rs11574483    G    A    326.19    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.28;DB;DP=31;Dels=0.0;FS=10.544;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=10.52;ReadPosRankSum=-0.199;SNPEFF_AMINO_ACID_CHANGE=R121H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73996000_73996338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537340    GT:AD:DP:GQ:PL    0/1:17,14:31:99:356,0,439
15    73996101    rs10083681    G    A    486.37    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.877;DB;DP=39;Dels=0.0;FS=7.182;HRun=0;HaplotypeScore=1.6498;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=12.47;ReadPosRankSum=0.734;SNPEFF_AMINO_ACID_CHANGE=A133T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73996000_73996338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537340    GT:AD:DP:GQ:PL    0/1:21,18:39:99:516,0,535
15    73996211    .    G    A    631.88    PASS    AB=0.233;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DP=30;Dels=0.0;FS=1.89;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=2.256;QD=21.06;ReadPosRankSum=2.108;SNPEFF_AMINO_ACID_CHANGE=P169;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_73996000_73996338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537340    GT:AD:DP:GQ:PL    0/1:7,23:30:99:662,0,186
15    73996359    rs2291014    G    A    145.29    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=52.57;MQ0=0;MQRankSum=-0.684;QD=18.16;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318424    GT:AD:DP:GQ:PL    0/1:3,5:8:90.39:175,0,90
15    74000503    rs11574490    G    A    127.85    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=18.26;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318424    GT:AD:DP:GQ:PL    0/1:2,5:7:60.82:158,0,61
15    74000729    rs2291012    G    C    386.70    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.668;QD=16.11;ReadPosRankSum=0.067;SNPEFF_AMINO_ACID_CHANGE=V118L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74000680_74000814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543481    GT:AD:DP:GQ:PL    0/1:10,14:24:99:417,0,266
15    74001993    rs11552770    T    C    554.40    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.593;DB;DP=54;Dels=0.0;FS=1.043;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.153;QD=10.27;ReadPosRankSum=-0.26;SNPEFF_AMINO_ACID_CHANGE=A285;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74001989_74002030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318424    GT:AD:DP:GQ:PL    0/1:31,23:54:99:584,0,986
15    74003533    rs966378    G    A    515.62    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.41;MQ0=0;MQRankSum=-0.482;QD=13.22;ReadPosRankSum=-1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD276;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318424    GT:AD:DP:GQ:PL    0/1:21,18:39:99:546,0,680
15    74032234    rs11857595    C    T    599.55    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=1.42;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=57.87;MQ0=0;MQRankSum=0.153;QD=18.17;ReadPosRankSum=1.842;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379822    GT:AD:DP:GQ:PL    0/1:13,19:33:99:630,0,387
15    74032783    rs28594180    A    G    1200.93    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=87;Dels=0.0;FS=6.56;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=13.8;ReadPosRankSum=0.242;SNPEFF_AMINO_ACID_CHANGE=S119;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74032152_74032983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf59;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379822    GT:AD:DP:GQ:PL    0/1:41,46:87:99:1231,0,1031
15    74033033    rs11858458    A    G    1311.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379822    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1344,99,0
15    74043523    rs7497362    A    G    205.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_74043316_74043816;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379822    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
15    74176453    rs67485728    GA    G    2997.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.0;HRun=4;HaplotypeScore=226.9369;IndelType=D;MQ=61.49;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300504    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3040,256,0
15    74177250    rs35697698    C    T    327.78    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.323;DB;DP=24;Dels=0.0;FS=1.76;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.831;QD=13.66;ReadPosRankSum=-1.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300504    GT:AD:DP:GQ:PL    0/1:11,13:24:99:358,0,375
15    74177553    rs896590    G    C    460.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=30.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300504    GT:AD:DP:GQ:PL    1/1:0,15:15:42.07:493,42,0
15    74178966    rs62007098    G    A    285.45    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.344;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.032;QD=15.02;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300504    GT:AD:DP:GQ:PL    0/1:8,11:19:99:315,0,215
15    74179024    rs62007099    C    A    145.68    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.21;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300504    GT:AD:DP:GQ:PL    0/1:3,5:8:99:176,0,103
15    74180923    .    TTCC    T    105.67    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=13;FS=0.0;HRun=0;HaplotypeScore=89.382;IndelType=D;MQ=58.1;MQ0=0;MQRankSum=1.38;QD=8.13;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300504    GT:AD:DP:GQ:PL    0/1:8,5:13:50.81:145,0,51
15    74181255    rs7170803    A    G    148.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300504    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:182,15,0
15    74183709    rs62007101    C    T    81.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300504    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:111,0,68
15    74239869    rs4595753    G    T    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261921    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
15    74241624    rs4243042    A    T    716.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261921    GT:AD:DP:GQ:PL    1/1:0,21:21:63.14:749,63,0
15    74244278    rs8818    C    G    331.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261921    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
15    74276551    rs9630436    T    C    31.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.26;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316900    GT:AD:DP:GQ:PL    0/1:4,2:6:61.57:62,0,136
15    74277795    rs10851866    T    C    90.26    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=18.05;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=A168;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74277659_74277854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOML1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316911    GT:AD:DP:GQ:PL    0/1:1,4:5:26.72:120,0,27
15    74284406    rs2304715    C    G    121.49    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=13.5;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STOML1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316900    GT:AD:DP:GQ:PL    0/1:4,5:9:99:151,0,123
15    74286929    rs5742914    C    T    40.05    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.01;ReadPosRankSum=-0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268058    GT:AD:DP:GQ:PL    0/1:1,4:5:30.29:70,0,30
15    74317043    rs2277599    T    C    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268058    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,72
15    74325182    rs2304716    A    G    68.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.56;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268058    GT:AD:DP:GQ:PL    0/1:5,3:8:98.45:98,0,168
15    74326557    rs2304717    T    C    38.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.7;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268058    GT:AD:DP:GQ:PL    0/1:3,2:5:68.50:69,0,74
15    74326711    rs2304718    G    A    950.22    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.393;DB;DP=61;Dels=0.0;FS=1.734;HRun=0;HaplotypeScore=0.8321;MQ=59.62;MQ0=0;MQRankSum=0.725;QD=15.58;ReadPosRankSum=0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268058    GT:AD:DP:GQ:PL    0/1:30,31:61:99:980,0,781
15    74328116    rs743580    A    G    1198.83    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.065;DB;DP=87;Dels=0.0;FS=0.913;HRun=1;HaplotypeScore=1.995;MQ=59.2;MQ0=0;MQRankSum=-0.105;QD=13.78;ReadPosRankSum=1.269;SNPEFF_AMINO_ACID_CHANGE=S724G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74327513_74328735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354026    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1229,0,1217
15    74328141    rs743581    G    T    1528.25    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.761;DB;DP=111;Dels=0.0;FS=2.885;HRun=1;HaplotypeScore=1.5253;MQ=59.38;MQ0=0;MQRankSum=0.773;QD=13.77;ReadPosRankSum=1.264;SNPEFF_AMINO_ACID_CHANGE=G732V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74327513_74328735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354026    GT:AD:DP:GQ:PL    0/1:56,55:111:99:1558,0,1728
15    74336394    rs8032123    C    T    191.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359928    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:225,18,0
15    74336633    rs5742915    T    C    749.25    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.105;DB;DP=65;Dels=0.0;FS=11.063;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.37;QD=11.53;ReadPosRankSum=1.594;SNPEFF_AMINO_ACID_CHANGE=F206L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74336562_74337473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PML;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417341    GT:AD:DP:GQ:PL    0/1:35,30:65:99:779,0,1155
15    74364434    .    C    T    47.07    MQFilter40    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DP=15;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=21.06;MQ0=4;MQRankSum=1.034;QD=3.14;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    0/1:8,7:15:77.07:77,0,126
15    74364445    .    C    T    47.96    MQFilter40    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.565;MQ=24.08;MQ0=2;MQRankSum=2.606;QD=2.4;ReadPosRankSum=-1.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    0/1:17,3:20:77.95:78,0,287
15    74364458    rs150292556    G    A    34.53    MQFilter40;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=0.096;DB;DP=25;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=0.5784;MQ=23.69;MQ0=3;MQRankSum=2.679;QD=1.38;ReadPosRankSum=0.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    0/1:22,3:25:64.52:65,0,383
15    74364467    rs143211531    C    A    331.10    MQFilter40    AB=0.192;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=25.43;MQ0=2;MQRankSum=-3.412;QD=12.73;ReadPosRankSum=0.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    0/1:5,21:26:99:361,0,139
15    74364502    rs145973585    G    C    120.10    MQFilter40    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.257;DB;DP=46;Dels=0.0;FS=11.487;HRun=0;HaplotypeScore=0.9469;MQ=25.76;MQ0=9;MQRankSum=-1.257;QD=2.61;ReadPosRankSum=-2.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    0/1:25,21:46:99:150,0,609
15    74364703    rs79759400    G    C    2114.02    HaplotypeScoreFilter13;MQFilter40    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=154;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=21.822;MQ=37.76;MQ0=7;MQRankSum=2.739;QD=13.73;ReadPosRankSum=-0.497;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    0/1:69,85:154:99:2144,0,1474
15    74364710    rs76931631    C    T    63.66    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.817;AC=1;AF=0.50;AN=2;BaseQRankSum=3.74;DB;DP=142;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=22.6107;MQ=37.3;MQ0=7;MQRankSum=-6.186;QD=0.45;ReadPosRankSum=-2.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    0/1:116,26:142:93.66:94,0,3028
15    74365264    rs148647622    T    G    342.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.9;MQ0=1;QD=10.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    1/1:0,33:33:36.07:375,36,0
15    74365266    .    C    T    49.54    MQFilter40;QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=3.53;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.75;MQ0=1;MQRankSum=0.245;QD=1.6;ReadPosRankSum=-0.098;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    0/1:24,7:31:79.53:80,0,192
15    74367358    .    G    C    1428.18    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.048;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8947;MQ=19.95;MQ0=2;MQRankSum=-0.684;QD=18.08;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290438    GT:AD:DP:GQ:PL    1/1:3,76:79:99:1461,157,0
15    74467856    rs1052622    G    A    672.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=23.19;SNPEFF_AMINO_ACID_CHANGE=T219;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74467192_74469213;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISLR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249842    GT:AD:DP:GQ:PL    1/1:0,24:29:60.08:705,60,0
15    74472199    rs10910    C    T    75.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9789;MQ=51.77;MQ0=0;QD=25.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249842    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
15    74472716    rs351242    G    A    156.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249842    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:189,15,0
15    74477216    rs351238    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323940    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    74477239    rs351237    G    A    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323940    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
15    74483020    rs351229    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    74483415    rs351228    T    C    213.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432245    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:247,21,0
15    74486510    rs148231779    AGAG    A    196.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=21.1972;IndelType=D;MQ=44.1;MQ0=0;QD=39.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432245    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:238,15,0
15    74536285    rs67845844    CA    C    560.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.456;DB;DP=77;FS=0.0;HRun=15;HaplotypeScore=401.538;IndelType=D;MQ=57.26;MQ0=0;MQRankSum=0.821;QD=7.28;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321288    GT:AD:DP:GQ:PL    1/1:21,48:77:79.91:603,80,0
15    74558927    rs440793    A    G    1588.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321288    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1621,135,0
15    74560566    rs1038436    C    T    160.55    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.276;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=10.7;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321288    GT:AD:DP:GQ:PL    0/1:7,8:15:99:191,0,252
15    74565181    rs79172627    G    A    435.14    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.268;DB;DP=36;Dels=0.0;FS=3.436;HRun=0;HaplotypeScore=1.7885;MQ=60.0;MQ0=0;MQRankSum=1.374;QD=12.09;ReadPosRankSum=0.579;SNPEFF_AMINO_ACID_CHANGE=P236;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74565112_74565232;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398814    GT:AD:DP:GQ:PL    0/1:19,16:36:99:465,0,533
15    74572242    rs351165    T    A    784.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321288    GT:AD:DP:GQ:PL    1/1:0,25:25:60.17:817,60,0
15    74572917    rs351164    A    G    1419.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321288    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1452,120,0
15    74573907    rs901130    G    C    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=7.68;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321288    GT:AD:DP:GQ:PL    0/1:3,2:5:68.42:68,0,100
15    74588024    rs1484212    T    C    870.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321288    GT:AD:DP:GQ:PL    1/1:0,26:26:75.20:903,75,0
15    74588380    rs173272    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321288    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
15    74622457    rs2277602    A    C    167.63    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=12.175;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=15.24;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268082    GT:AD:DP:GQ:PL    0/1:5,6:11:99:198,0,174
15    74623272    rs2277605    G    A    121.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.22;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268082    GT:AD:DP:GQ:PL    0/1:3,5:8:83.86:152,0,84
15    74623302    rs2277606    T    C    56.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=11.29;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268082    GT:AD:DP:GQ:PL    0/1:2,3:5:56.35:86,0,56
15    74626429    rs149705756    G    A    83.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268053    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:113,0,29
15    74627222    rs2279356    G    T    189.30    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=14.56;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268053    GT:AD:DP:GQ:PL    0/1:5,7:13:99:219,0,172
15    74628242    rs900802    C    T    1280.40    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=0.829;DB;DP=87;Dels=0.0;FS=0.844;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.027;QD=14.72;ReadPosRankSum=-0.523;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321374    GT:AD:DP:GQ:PL    0/1:37,50:87:99:1310,0,1062
15    74628891    rs2959003    A    G    94.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.82;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268082    GT:AD:DP:GQ:PL    0/1:4,4:8:99:125,0,139
15    74632284    rs12917295    C    G    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268082    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,69
15    74654146    rs4505257    T    C    1665.14    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.467;DB;DP=127;Dels=0.0;FS=2.322;HRun=0;HaplotypeScore=0.9469;MQ=59.53;MQ0=0;MQRankSum=-0.215;QD=13.01;ReadPosRankSum=0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268053    GT:AD:DP:GQ:PL    0/1:65,62:127:99:1695,0,2133
15    74659609    rs28681535    G    T    513.81    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.871;DB;DP=42;Dels=0.0;FS=3.114;HRun=0;HaplotypeScore=1.6988;MQ=58.33;MQ0=0;MQRankSum=1.49;QD=12.23;ReadPosRankSum=-0.894;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP11A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268053    GT:AD:DP:GQ:PL    0/1:21,20:42:99:544,0,644
15    74703929    rs741761    T    C    358.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.51;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.995;QD=11.94;ReadPosRankSum=0.412;SNPEFF_AMINO_ACID_CHANGE=Q350;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_74703897_74704051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542748    GT:AD:DP:GQ:PL    0/1:15,15:30:99:388,0,411
15    74706791    .    C    T    409.07    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=0.161;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.226;QD=17.79;ReadPosRankSum=-0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261918    GT:AD:DP:GQ:PL    0/1:8,15:23:99:439,0,232
15    74709566    rs2075590    T    G    458.65    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.535;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.094;QD=19.94;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261918    GT:AD:DP:GQ:PL    0/1:9,14:23:99:489,0,291
15    74710593    rs28362912    C    T    1088.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.83;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261918    GT:AD:DP:GQ:PL    1/1:0,36:36:90.27:1122,90,0
15    74920220    rs116916068    G    A    1043.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.676;DB;DP=45;Dels=0.0;FS=5.216;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.391;QD=23.2;ReadPosRankSum=-2.507;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315127    GT:AD:DP:GQ:PL    0/1:15,30:45:99:1074,0,396
15    75041917    rs762551    C    A    294.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=19.6;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343932    GT:AD:DP:GQ:PL    0/1:5,10:15:99:324,0,167
15    75044238    rs2472304    G    A    355.43    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.045;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=10.77;ReadPosRankSum=-0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343932    GT:AD:DP:GQ:PL    0/1:20,13:33:99:385,0,705
15    75047426    rs2470890    C    T    362.10    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.354;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;MQRankSum=1.795;QD=13.93;ReadPosRankSum=-0.472;SNPEFF_AMINO_ACID_CHANGE=N516;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75047132_75048941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343932    GT:AD:DP:GQ:PL    0/1:11,15:26:99:392,0,268
15    75109093    rs191127849    C    A    65.46    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.731;QD=10.91;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMAN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309664    GT:AD:DP:GQ:PL    0/1:1,5:6:27.22:95,0,27
15    75109094    rs182868784    C    T    67.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.731;QD=11.22;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMAN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309664    GT:AD:DP:GQ:PL    0/1:2,4:6:25:97,0,25
15    75114322    rs11636952    T    C    160.12    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.727;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.555;QD=10.01;ReadPosRankSum=-1.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMAN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456603    GT:AD:DP:GQ:PL    0/1:7,9:16:99:190,0,243
15    75114374    rs11072509    C    G    53.63    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=6.7;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMAN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456603    GT:AD:DP:GQ:PL    0/1:5,3:8:83.62:84,0,150
15    75115895    rs7162232    G    A    695.07    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.05;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8977;MQ=60.0;MQ0=0;MQRankSum=-1.33;QD=14.19;ReadPosRankSum=0.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMAN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456603    GT:AD:DP:GQ:PL    0/1:25,24:49:99:725,0,743
15    75116167    rs12917376    C    T    77.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.51;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMAN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456603    GT:AD:DP:GQ:PL    0/1:2,3:5:53.66:108,0,54
15    75116184    rs11634474    C    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMAN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    75117912    rs79217743    G    T    1124.19    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.329;DB;DP=102;Dels=0.0;FS=3.655;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.553;QD=11.02;ReadPosRankSum=0.787;SNPEFF_AMINO_ACID_CHANGE=R504M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75117817_75118095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LMAN1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379709    GT:AD:DP:GQ:PL    0/1:53,49:102:99:1154,0,1713
15    75129594    rs2290573    G    A    68.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.4;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418051    GT:AD:DP:GQ:PL    0/1:3,3:6:98.37:98,0,102
15    75130093    rs12898397    T    C    117.90    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=0.429;QD=7.37;ReadPosRankSum=-0.306;SNPEFF_AMINO_ACID_CHANGE=K445R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75130092_75130139;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440863    GT:AD:DP:GQ:PL    0/1:10,6:16:99:148,0,293
15    75130573    rs2290572    A    G    35.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.77;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418051    GT:AD:DP:GQ:PL    0/1:2,2:4:58.84:65,0,59
15    75131661    rs4886615    A    G    34.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=8.75;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A302;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75131609_75131714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440863    GT:AD:DP:GQ:PL    0/1:2,2:4:61.40:65,0,61
15    75132490    rs12908814    C    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268099    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    75140854    rs3765066    G    A    99.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=16.58;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268099    GT:AD:DP:GQ:PL    0/1:2,4:6:57.50:129,0,57
15    75183935    rs11638130    G    A    1070.65    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.056;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.71;MQ0=0;MQRankSum=0.478;QD=14.87;ReadPosRankSum=0.904;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323744    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1101,0,1112
15    75185670    rs7495739    A    G    223.54    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DB;DP=21;Dels=0.0;FS=2.199;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.445;QD=10.64;ReadPosRankSum=1.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323744    GT:AD:DP:GQ:PL    0/1:11,10:21:99:254,0,400
15    75188506    rs139190144    C    T    995.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.416;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9363;MQ=59.25;MQ0=0;MQRankSum=-2.277;QD=17.78;ReadPosRankSum=0.306;SNPEFF_AMINO_ACID_CHANGE=N167;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75188493_75188666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323744    GT:AD:DP:GQ:PL    0/1:24,32:56:99:1026,0,765
15    75189930    rs1130741    A    G    887.71    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=1.7;DB;DP=53;Dels=0.0;FS=2.427;HRun=0;HaplotypeScore=4.0772;MQ=58.77;MQ0=0;MQRankSum=-0.264;QD=16.75;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=V316;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75189853_75190569;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323744    GT:AD:DP:GQ:PL    0/1:21,32:53:99:918,0,653
15    75221245    rs12912839    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322347    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    75308837    rs4886648    G    A    434.87    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=3.44;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.05;QD=19.77;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361900    GT:AD:DP:GQ:PL    0/1:9,13:22:99:465,0,205
15    75310075    rs12593566    C    A    288.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361900    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:321,24,0
15    75311036    rs2289583    C    A    236.75    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.29;MQ0=0;MQRankSum=0.137;QD=9.11;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAMP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361900    GT:AD:DP:GQ:PL    0/1:15,11:26:99:267,0,428
15    75336729    rs2304899    A    G    950.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=I78M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75336727_75336855;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPCDC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342932    GT:AD:DP:GQ:PL    1/1:0,30:30:72.24:984,72,0
15    75340727    rs2304902    G    T    83.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.92;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPCDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342932    GT:AD:DP:GQ:PL    0/1:1,3:4:19.51:114,0,20
15    75498548    rs1466663    A    G    1239    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.44;MQ0=0;QD=30.22;SNPEFF_AMINO_ACID_CHANGE=A53;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75498340_75501165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360639    GT:AD:DP:GQ:PL    1/1:0,41:41:96.31:1272,96,0
15    75498744    rs1873379    G    C    360.70    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.655;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.27;MQ0=0;MQRankSum=0.558;QD=13.36;ReadPosRankSum=1.189;SNPEFF_AMINO_ACID_CHANGE=A119P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75498340_75501165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf39;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360639    GT:AD:DP:GQ:PL    0/1:13,14:27:99:391,0,396
15    75499602    rs12591506    C    A    3038.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=R405;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75498340_75501165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360639    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3071,229,0
15    75499619    rs11072531    T    C    1914.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=27.35;SNPEFF_AMINO_ACID_CHANGE=P410;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75498340_75501165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360639    GT:AD:DP:GQ:PL    1/1:0,70:70:99:1947,171,0
15    75499861    rs11072532    G    A    1522.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.59;SNPEFF_AMINO_ACID_CHANGE=G491D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75498340_75501165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf39;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360639    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1555,120,0
15    75499995    rs28509789    T    G    343.40    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.161;DB;DP=29;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=-0.253;QD=11.84;ReadPosRankSum=1.723;SNPEFF_AMINO_ACID_CHANGE=S536A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75498340_75501165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf39;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360639    GT:AD:DP:GQ:PL    0/1:14,15:29:99:373,0,453
15    75503147    rs3743211    G    A    761.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=G343D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75503090_75503502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf39;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446981    GT:AD:DP:GQ:PL    1/1:0,25:25:60.18:794,60,0
15    75561290    .    G    C    35.92    MQFilter40;QDFilter2    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=0.149;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=22.46;MQ0=12;MQRankSum=-2.258;QD=0.61;ReadPosRankSum=1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300576    GT:AD:DP:GQ:PL    0/1:47,12:59:65.92:66,0,802
15    75562409    .    G    A    406.45    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=2.214;DP=189;Dels=0.0;FS=14.176;HRun=2;HaplotypeScore=4.0989;MQ=41.49;MQ0=11;MQRankSum=-0.735;QD=2.15;ReadPosRankSum=-0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300576    GT:AD:DP:GQ:PL    0/1:149,40:189:99:436,0,3335
15    75594175    rs58341256    C    T    435.84    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=50.69;MQ0=3;MQRankSum=-1.338;QD=13.62;ReadPosRankSum=0.11;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,17:32:99:466,0,430
15    75594324    rs145834281    T    C    64.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.87;MQ0=0;MQRankSum=-0.358;QD=12.82;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:47.29:94,0,47
15    75630318    .    G    C    34.20    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-2.589;QD=2.85;ReadPosRankSum=1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267935    GT:AD:DP:GQ:PL    0/1:9,3:12:64.19:64,0,328
15    75630342    .    C    G    146.24    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DP=18;Dels=0.0;FS=3.14;HRun=2;HaplotypeScore=0.0;MQ=50.27;MQ0=0;MQRankSum=-3.532;QD=8.12;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267935    GT:AD:DP:GQ:PL    0/1:11,7:18:99:176,0,339
15    75630363    .    G    T    105.88    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.675;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.24;MQ0=0;MQRankSum=-3.464;QD=5.57;ReadPosRankSum=-0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267935    GT:AD:DP:GQ:PL    0/1:13,6:19:99:136,0,443
15    75631839    rs11639290    A    C    109.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267935    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:142,12,0
15    75632280    rs117112913    C    T    392.04    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.258;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.479;QD=17.82;ReadPosRankSum=-1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267935    GT:AD:DP:GQ:PL    0/1:6,16:22:99:422,0,174
15    75650836    rs1128933    G    A    419.98    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.892;DB;DP=44;Dels=0.0;FS=1.232;HRun=0;HaplotypeScore=0.8667;MQ=57.87;MQ0=0;MQRankSum=0.458;QD=9.55;ReadPosRankSum=-0.771;SNPEFF_AMINO_ACID_CHANGE=D790;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75650803_75650959;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000267978    GT:AD:DP:GQ:PL    0/1:27,17:44:99:450,0,739
15    75650972    rs3809549    G    A    168.95    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.431;DB;DP=26;Dels=0.0;FS=1.941;HRun=0;HaplotypeScore=0.0;MQ=51.96;MQ0=0;MQRankSum=-0.108;QD=6.5;ReadPosRankSum=-0.808;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421803    GT:AD:DP:GQ:PL    0/1:17,9:26:99:199,0,513
15    75651022    rs144059216    C    CCCACATGCTGCCCAGCCCATA    4531.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=344.78;IndelType=I;MQ=43.88;MQ0=0;QD=167.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421803    GT:AD:DP:GQ:PL    1/1:13,11:27:57.19:4532,57,0
15    75653378    rs7174408    T    C    363.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421803    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:397,30,0
15    75660662    rs75458893    C    T    32.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.16;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360439    GT:AD:DP:GQ:PL    0/1:2,2:4:54.57:63,0,55
15    75692186    rs75782768    C    T    106.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.72;QD=17.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360439    GT:AD:DP:GQ:PL    0/1:2,4:6:58.53:137,0,59
15    75702754    rs79147131    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.026;QD=7.72;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIN3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360439    GT:AD:DP:GQ:PL    0/1:2,2:5:64.10:69,0,64
15    75890612    rs3210683    G    A    95.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=7.99;ReadPosRankSum=-0.289;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNUPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308588    GT:AD:DP:GQ:PL    0/1:8,4:12:99:126,0,292
15    75890689    rs1128585    G    T    301.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=30;Dels=0.0;FS=3.948;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.686;QD=10.07;ReadPosRankSum=1.218;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNUPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308588    GT:AD:DP:GQ:PL    0/1:18,12:30:99:332,0,589
15    75913430    rs77935734    C    T    508.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.488;DB;DP=35;Dels=0.0;FS=6.778;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=14.52;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNUPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308588    GT:AD:DP:GQ:PL    0/1:14,21:35:99:538,0,405
15    75931777    rs4886724    C    T    233.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542473    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:267,21,0
15    75967814    rs1127646    A    G    154.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537176    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:187,15,0
15    75969781    rs11853792    C    T    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
15    75970070    rs8023621    C    T    1226.84    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=3.166;DB;DP=84;Dels=0.0;FS=0.97;HRun=0;HaplotypeScore=1.2434;MQ=59.45;MQ0=0;MQRankSum=-0.046;QD=14.61;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=R1703H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75970044_75970227;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    0/1:41,43:84:99:1257,0,961
15    75977920    rs62027240    A    G    561.13    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=34.42;MQ0=2;QD=25.51;SNPEFF_AMINO_ACID_CHANGE=P1304;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75977560_75978042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    1/1:0,22:22:51.14:594,51,0
15    75979782    rs8030131    G    T    945.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.59;MQ0=0;QD=28.64;SNPEFF_AMINO_ACID_CHANGE=R1208;SNPEFF_CODON_CHANGE=cgC/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75979617_75983153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    1/1:1,32:33:75.23:978,75,0
15    75980112    rs4414463    A    G    1334.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=A1098;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75979617_75983153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1368,114,0
15    75981507    rs12900539    A    G    1685.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.48;MQ0=0;QD=31.81;SNPEFF_AMINO_ACID_CHANGE=G633;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75979617_75983153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1719,135,0
15    75982227    rs78884605    T    G    353.25    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.563;DB;DP=17;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=1.8273;MQ=53.31;MQ0=0;MQRankSum=1.256;QD=20.78;ReadPosRankSum=0.854;SNPEFF_AMINO_ACID_CHANGE=G393;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75979617_75983153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    0/1:6,11:17:99:383,0,169
15    75982239    rs148229217    G    A    234.70    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.932;DB;DP=13;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.9332;MQ=51.08;MQ0=0;MQRankSum=0.289;QD=18.05;ReadPosRankSum=-0.289;SNPEFF_AMINO_ACID_CHANGE=D389;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75979617_75983153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    0/1:4,9:13:90.93:265,0,91
15    75982428    rs7182906    C    T    88.70    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=16;Dels=0.0;FS=3.041;HRun=0;HaplotypeScore=0.0;MQ=50.48;MQ0=0;MQRankSum=-0.495;QD=5.54;ReadPosRankSum=-0.636;SNPEFF_AMINO_ACID_CHANGE=G326;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_75979617_75983153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    0/1:11,5:16:99:119,0,311
15    75985669    rs185438072    C    T    158.31    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.44;MQ0=0;MQRankSum=-0.244;QD=13.19;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308508    GT:AD:DP:GQ:PL    0/1:5,7:12:99:188,0,155
15    76019278    .    G    A    755.42    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.104;DP=58;Dels=0.0;FS=15.955;HRun=0;HaplotypeScore=0.9973;MQ=54.6;MQ0=0;MQRankSum=0.133;QD=13.02;ReadPosRankSum=-1.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332145    GT:AD:DP:GQ:PL    0/1:26,32:58:99:785,0,862
15    76031587    rs4886457    G    T    243.82    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.889;DB;DP=25;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=0.854;QD=9.75;ReadPosRankSum=1.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543887    GT:AD:DP:GQ:PL    0/1:13,12:25:99:274,0,370
15    76031692    rs28657001    C    T    44.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543887    GT:AD:DP:GQ:PL    0/1:1,2:3:13.67:75,0,14
15    76073218    rs35237189    C    A    2412.55    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.138;DB;DP=153;Dels=0.0;FS=1.297;HRun=0;HaplotypeScore=0.7887;MQ=57.36;MQ0=0;MQRankSum=1.051;QD=15.77;ReadPosRankSum=0.961;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:74,79:153:99:2443,0,2057
15    76075649    rs34909574    G    A    855.51    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=2.478;DB;DP=99;Dels=0.0;FS=1.01;HRun=1;HaplotypeScore=6.0445;MQ=51.66;MQ0=0;MQRankSum=-3.182;QD=8.64;ReadPosRankSum=-0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:58,40:99:99:886,0,804
15    76075731    rs75085810    T    C    211.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.32;MQ0=1;MQRankSum=-5.625;QD=4.8;ReadPosRankSum=1.081;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:22,22:44:99:241,0,780
15    76075732    rs75899417    A    C    213.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.765;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.32;MQ0=1;MQRankSum=-5.625;QD=4.86;ReadPosRankSum=1.008;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:22,22:44:99:244,0,792
15    76075943    rs11852472    C    A    1469.23    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.855;DB;DP=96;Dels=0.0;FS=0.777;HRun=1;HaplotypeScore=1.7653;MQ=58.73;MQ0=0;MQRankSum=-0.384;QD=15.3;ReadPosRankSum=0.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:44,51:96:99:1499,0,1333
15    76077583    rs68086049    T    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    76077988    rs57654272    C    G    436.79    MQFilter40    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=33;Dels=0.0;FS=6.043;HRun=0;HaplotypeScore=4.9987;MQ=27.08;MQ0=3;MQRankSum=-3.395;QD=13.24;ReadPosRankSum=1.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:6,27:33:99:467,0,132
15    76077992    rs61053099    C    G    112.40    MQFilter40    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=0.374;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7874;MQ=27.68;MQ0=3;MQRankSum=-1.43;QD=3.41;ReadPosRankSum=-2.442;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:23,10:33:99:142,0,469
15    76078004    rs34818937    G    GT    389.09    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=26;FS=2.291;HRun=3;HaplotypeScore=234.1812;IndelType=I;MQ=30.52;MQ0=2;MQRankSum=3.377;QD=11.79;ReadPosRankSum=-1.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:17,16:26:99:428,0,360
15    76078022    rs2593292    T    G    177.88    MQFilter40    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=3.13;DB;DP=31;Dels=0.0;FS=2.58;HRun=0;HaplotypeScore=0.9995;MQ=31.72;MQ0=2;MQRankSum=3.077;QD=5.74;ReadPosRankSum=2.441;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:22,8:31:99:208,0,491
15    76078031    rs74817895    C    T    221.71    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.218;DB;DP=25;Dels=0.0;FS=5.102;HRun=0;HaplotypeScore=1.7882;MQ=35.81;MQ0=2;MQRankSum=2.218;QD=8.87;ReadPosRankSum=1.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:16,9:25:99:252,0,414
15    76078044    rs28515129    G    A    224.47    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.11;DB;DP=25;Dels=0.0;FS=1.999;HRun=0;HaplotypeScore=0.7887;MQ=37.36;MQ0=2;MQRankSum=0.913;QD=8.98;ReadPosRankSum=0.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:15,10:25:99:254,0,428
15    76078089    rs12439425    G    A    57.08    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=13;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=45.86;MQ0=1;MQRankSum=-0.825;QD=4.39;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:8,5:13:87.08:87,0,259
15    76078115    rs8037509    C    T    37.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.55;MQ0=1;MQRankSum=-1.001;QD=3.74;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:6,4:10:67.35:67,0,218
15    76078119    rs8037787    G    T    58.37    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.46;MQ0=0;MQRankSum=-1.398;QD=5.31;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:7,4:11:88.36:88,0,237
15    76078148    rs117379723    G    C    73.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.88;MQ0=0;MQRankSum=-2.359;QD=6.13;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395215    GT:AD:DP:GQ:PL    0/1:8,4:12:99:104,0,272
15    76078875    .    G    A    544.05    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.238;DP=49;Dels=0.0;FS=7.067;HRun=2;HaplotypeScore=1.9497;MQ=58.58;MQ0=0;MQRankSum=0.682;QD=11.1;ReadPosRankSum=-1.921;SNPEFF_AMINO_ACID_CHANGE=K72;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_76078870_76079023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC019294.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338857    GT:AD:DP:GQ:PL    0/1:27,22:49:99:574,0,729
15    76085273    rs34821913    G    T    149.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.336;QD=14.95;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,5:10:99:180,0,160
15    76136194    rs2047866    C    T    150.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267938    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:183,15,0
15    76168406    rs71440278    C    CAA    160.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.756;DB;DP=35;FS=0.0;HRun=18;HaplotypeScore=599.9503;IndelType=I;MQ=34.0;MQ0=0;MQRankSum=-2.318;QD=4.59;ReadPosRankSum=-1.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267938    GT:AD:DP:GQ:PL    1/1:20,6:35:11.26:202,11,0
15    76175828    rs1868020    G    A    933.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267938    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:967,72,0
15    76182596    rs335714    A    G    76.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267938    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
15    76182949    rs335713    C    T    401.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267938    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:435,33,0
15    76189108    rs1910510    G    T    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267938    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
15    76191644    rs28607641    A    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267938    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
15    76191802    rs335689    G    A    1360.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=28.35;SNPEFF_AMINO_ACID_CHANGE=V307M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_76191768_76193380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338677    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1394,102,0
15    76191852    rs335688    T    C    1272.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308275    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1306,96,0
15    76191966    rs335687    T    C    186.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308275    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:220,18,0
15    76196674    rs2455895    T    C    80.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Q2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267938    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
15    76205523    .    AT    A    262.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.459;DP=36;FS=1.608;HRun=12;HaplotypeScore=111.4355;IndelType=D;MQ=59.02;MQ0=0;MQRankSum=-0.479;QD=7.3;ReadPosRankSum=0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308275    GT:AD:DP:GQ:PL    0/1:17,18:36:99:302,0,391
15    76209482    .    G    T    239.31    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.369;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.9978;MQ=38.52;MQ0=0;MQRankSum=-2.014;QD=13.29;ReadPosRankSum=2.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308275    GT:AD:DP:GQ:PL    0/1:3,15:18:72.85:269,0,73
15    76222140    rs335679    G    T    907.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308275    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:941,69,0
15    76248427    rs66577660    GT    G    380.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=12;HaplotypeScore=65.0995;IndelType=D;MQ=59.88;MQ0=0;QD=16.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498750    GT:AD:DP:GQ:PL    1/1:4,18:23:55.82:423,56,0
15    76448776    rs2955732    C    T    72.38    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.769;QD=6.58;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388942    GT:AD:DP:GQ:PL    0/1:7,4:11:99:102,0,260
15    76448796    rs2935971    G    A    205.41    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.424;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=15.8;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388942    GT:AD:DP:GQ:PL    0/1:6,7:13:99:235,0,213
15    76496742    rs191520541    G    A    242.56    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.627;QD=17.33;ReadPosRankSum=0.225;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388942    GT:AD:DP:GQ:PL    0/1:6,8:14:99:273,0,207
15    76518346    rs11281932    C    CCCTTA    2915.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=117.2651;IndelType=I;MQ=49.28;MQ0=0;QD=91.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267950    GT:AD:DP:GQ:PL    1/1:2,28:32:96.32:2957,96,0
15    76578997    rs2456069    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267950    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    76584686    rs11421336    T    TA    882.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=3;HaplotypeScore=40.1426;IndelType=I;MQ=60.0;MQ0=0;QD=40.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267950    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:925,66,0
15    76587777    rs3759853    C    T    253.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267950    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:286,24,0
15    76630303    rs4636879    T    C    833.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_AMINO_ACID_CHANGE=Y81;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_76630119_76630308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290759    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:866,69,0
15    76631027    rs4489970    A    G    175.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290759    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:208,15,0
15    76632907    rs7180257    A    G    865.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.56;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290759    GT:AD:DP:GQ:PL    1/1:0,27:27:69.21:899,69,0
15    76640855    rs79434076    C    T    172.36    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.853;QD=5.94;ReadPosRankSum=-0.415;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324767    GT:AD:DP:GQ:PL    0/1:21,8:29:99:202,0,748
15    76673627    rs17460201    T    C    451.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324767    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:484,36,0
15    76696635    rs2957614    C    T    206.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303521    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
15    76763248    rs185860    C    G    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303521    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
15    76763439    .    CTT    C    265.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.253;DP=20;FS=0.0;HRun=14;HaplotypeScore=138.2696;IndelType=D;MQ=58.64;MQ0=0;MQRankSum=2.07;QD=13.25;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303521    GT:AD:DP:GQ:PL    0/1:5,15:20:53.95:304,0,54
15    76957958    rs280021    A    G    2701.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303521    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2734,208,0
15    77064389    rs66496622    TGAA    T    1095.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=125.2331;IndelType=D;MQ=55.99;MQ0=0;QD=36.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303521    GT:AD:DP:GQ:PL    1/1:5,25:30:75.25:1137,75,0
15    77154589    rs66508413    GCTTTTATAAAA    G    1624.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=197.2334;IndelType=D;MQ=33.46;MQ0=0;QD=95.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAPER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303521    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:1666,48,0
15    77241568    rs1711018    T    C    2118.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8274;MQ=59.17;MQ0=0;QD=18.91;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320963    GT:AD:DP:GQ:PL    1/1:0,109:112:99:2151,210,0
15    77241751    rs1706848    T    C    46.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.73;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320963    GT:AD:DP:GQ:PL    1/1:0,4:4:8.99:79,9,0
15    77310636    rs3812911    G    C    37.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSTPIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267939    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
15    77323009    rs2469237    T    C    154.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSTPIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267939    GT:AD:DP:GQ:PL    1/1:0,8:8:18.03:187,18,0
15    77323029    rs12903227    C    A    69.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.56;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSTPIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267939    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,100
15    77328108    rs11373069    G    GA    558.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=33.6962;IndelType=I;MQ=60.77;MQ0=0;QD=39.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSTPIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267939    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:601,42,0
15    77344793    rs11737    T    A    722.19    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.97;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.463;QD=15.37;ReadPosRankSum=-0.551;SNPEFF_AMINO_ACID_CHANGE=V137;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_77344727_77344810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424443    GT:AD:DP:GQ:PL    0/1:21,25:47:99:752,0,515
15    77406396    rs3743479    C    T    367.31    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.739;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.4;QD=15.97;ReadPosRankSum=-0.215;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087465.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312493    GT:AD:DP:GQ:PL    0/1:11,12:23:99:397,0,380
15    77407114    rs1867780    C    G    490.67    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=3.138;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.08;QD=18.17;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=S1542T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_77400471_77407661;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087465.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312493    GT:AD:DP:GQ:PL    0/1:10,17:27:99:521,0,275
15    77471105    rs11856513    C    A    39.03    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.217;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.072;QD=2.44;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087465.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312493    GT:AD:DP:GQ:PL    0/1:12,4:16:69.02:69,0,452
15    77756418    rs2307141    A    G    50.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=10.13;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMG20A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336216    GT:AD:DP:GQ:PL    0/1:2,3:5:64.93:81,0,65
15    77759295    rs2055901    G    A    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.3;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMG20A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336216    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:67,0,66
15    77907145    rs3743481    G    A    949.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=S368;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_77905369_77908242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINGO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355300    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:982,75,0
15    77907535    rs2271396    C    G    2079.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=34.66;SNPEFF_AMINO_ACID_CHANGE=L238;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_77905369_77908242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINGO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355300    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2113,159,0
15    77907775    rs2271397    T    C    4270.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2436;MQ=59.62;MQ0=0;QD=35.29;SNPEFF_AMINO_ACID_CHANGE=L158;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_77905369_77908242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINGO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355300    GT:AD:DP:GQ:PL    1/1:0,120:120:99:4270,313,0
15    77907784    rs2271398    G    A    3856.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5518;MQ=59.58;MQ0=0;QD=35.38;SNPEFF_AMINO_ACID_CHANGE=I155;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_77905369_77908242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINGO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355300    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3856,283,0
15    78189075    rs4569232    G    A    121.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.4;MQ0=0;MQRankSum=0.336;QD=12.15;ReadPosRankSum=-1.098;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,5:10:99:151,0,153
15    78189084    rs4243062    T    C    368.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.31;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:402,33,0
15    78189206    rs4886959    C    T    189.81    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=54.14;MQ0=0;MQRankSum=-2.166;QD=18.98;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,7:10:88.67:220,0,89
15    78189268    rs11630652    A    T    150.35    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.7887;MQ=49.44;MQ0=0;MQRankSum=-2.037;QD=13.67;ReadPosRankSum=-2.228;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,7:11:99:180,0,134
15    78189370    rs4441238    A    C    459.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.8;MQ0=0;QD=28.69;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:492,39,0
15    78189525    rs4886960    C    T    330.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=29;Dels=0.0;FS=6.569;HRun=0;HaplotypeScore=0.9916;MQ=41.18;MQ0=3;MQRankSum=1.877;QD=11.39;ReadPosRankSum=1.55;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,12:29:99:360,0,333
15    78189539    rs4414461    T    A    207.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=27;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=0.0;MQ=40.18;MQ0=3;MQRankSum=-3.194;QD=7.69;ReadPosRankSum=-1.581;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,13:27:99:238,0,417
15    78189544    rs4335744    C    T    788.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=41.05;MQ0=3;QD=28.17;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,28:28:66.20:822,66,0
15    78189652    rs4243063    A    C    36    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=1.29;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,28:28:8.96:68,9,0
15    78189653    rs4243064    G    A    44.87    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=1.6;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,27:28:8.98:77,9,0
15    78190364    rs4429256    T    C    1398.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.9;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1432,117,0
15    78191288    rs4886537    T    G    493.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.395;DB;DP=28;Dels=0.0;FS=5.59;HRun=0;HaplotypeScore=1.5741;MQ=59.17;MQ0=0;MQRankSum=0.487;QD=17.62;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,16:28:99:523,0,365
15    78191543    rs8041172    C    T    790.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:823,63,0
15    78191710    rs6495256    G    A    775.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,23:24:66.19:808,66,0
15    78191756    rs6495257    C    A    447.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=17.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,26:26:39.09:481,39,0
15    78191787    rs6495258    G    A    1144.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;QD=38.16;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,30:30:87.29:1178,87,0
15    78191852    rs6495259    A    G    1374.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.37;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1407,114,0
15    78193710    rs3902971    A    G    173.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=12.43;ReadPosRankSum=-1.222;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,8:14:99:204,0,212
15    78193730    rs3902785    G    A    180.28    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=12.02;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,7:15:99:210,0,203
15    78196212    rs7178928    A    G    104.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:137,12,0
15    78207347    rs60729630    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.99;MQ0=1;MQRankSum=0.736;QD=8.91;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    1/1:2,2:4:6.02:67,6,0
15    78207469    rs60003906    C    G    1285.02    PASS    AB=0.236;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.293;DB;DP=55;Dels=0.0;FS=5.57;HRun=0;HaplotypeScore=0.9867;MQ=45.19;MQ0=4;MQRankSum=3.76;QD=23.36;ReadPosRankSum=-1.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:13,42:55:59.91:1315,0,60
15    78207495    rs57630695    C    T    1718.90    PASS    AB=0.169;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.76;MQ0=2;MQRankSum=4.37;QD=26.44;ReadPosRankSum=-1.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:11,54:65:3.31:1748,0,3
15    78207558    rs59521538    C    T    1892.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.232;DB;DP=79;Dels=0.0;FS=8.429;HRun=0;HaplotypeScore=0.9734;MQ=45.98;MQ0=2;MQRankSum=3.544;QD=23.96;ReadPosRankSum=0.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    1/1:9,70:79:21.83:1926,22,0
15    78207625    rs55782515    A    G    2005.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.2;MQ0=6;QD=25.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2039,177,0
15    78207671    rs57708464    C    T    840.41    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.943;DB;DP=68;Dels=0.0;FS=27.476;HRun=0;HaplotypeScore=1.9468;MQ=42.22;MQ0=5;MQRankSum=1.479;QD=12.36;ReadPosRankSum=0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:30,38:68:99:870,0,757
15    78207729    rs59711627    G    C    349.40    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.012;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.57;MQ0=4;MQRankSum=-3.043;QD=7.13;ReadPosRankSum=0.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:27,22:49:99:379,0,815
15    78207753    rs61520355    G    A    384.06    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.15;DB;DP=44;Dels=0.0;FS=1.348;HRun=0;HaplotypeScore=0.9983;MQ=47.38;MQ0=4;MQRankSum=-3.823;QD=8.73;ReadPosRankSum=0.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:24,20:44:99:414,0,663
15    78207762    rs57642131    C    A    408.81    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=46;Dels=0.0;FS=1.341;HRun=1;HaplotypeScore=0.0;MQ=47.65;MQ0=4;MQRankSum=-3.951;QD=8.89;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:25,21:46:99:439,0,678
15    78207818    rs150380130    C    T    250.93    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=2.051;DB;DP=41;Dels=0.0;FS=1.415;HRun=0;HaplotypeScore=0.0;MQ=52.17;MQ0=1;MQRankSum=-2.878;QD=6.12;ReadPosRankSum=-0.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:28,13:41:99:281,0,811
15    78207864    rs66955965    C    A    295.21    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=1.191;DB;DP=38;Dels=0.0;FS=3.114;HRun=2;HaplotypeScore=0.9734;MQ=54.6;MQ0=0;MQRankSum=-2.478;QD=7.77;ReadPosRankSum=1.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:27,11:38:99:325,0,866
15    78207914    rs67793790    T    C    226.81    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=31;Dels=0.0;FS=10.401;HRun=3;HaplotypeScore=2.7883;MQ=54.7;MQ0=0;MQRankSum=-2.496;QD=7.32;ReadPosRankSum=-2.539;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:20,11:31:99:257,0,601
15    78207974    rs71400903    T    C    339.19    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.774;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.84;MQ0=2;MQRankSum=-4.062;QD=8.48;ReadPosRankSum=-0.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:22,18:40:99:369,0,689
15    78208021    rs58158543    T    C    905.18    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.69;DB;DP=77;Dels=0.0;FS=9.111;HRun=1;HaplotypeScore=0.6651;MQ=51.22;MQ0=2;MQRankSum=-3.799;QD=11.76;ReadPosRankSum=-0.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:38,39:77:99:935,0,1210
15    78208607    rs11072697    T    G    55.49    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.709;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.34;MQ0=0;MQRankSum=-1.473;QD=3.7;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:9,6:15:85.48:85,0,308
15    78208634    rs11072698    C    T    124.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.52;MQ0=0;MQRankSum=-1.517;QD=10.38;ReadPosRankSum=-0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:6,6:12:99:155,0,220
15    78208711    rs11072699    C    T    194.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.01;MQ0=0;MQRankSum=0.068;QD=13.9;ReadPosRankSum=-1.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:7,7:14:99:225,0,243
15    78208723    rs11072700    A    G    151.17    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.951;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.66;MQ0=0;MQRankSum=-0.752;QD=10.08;ReadPosRankSum=-0.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:8,7:15:99:181,0,285
15    78208775    rs11072701    C    G    174.23    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=43.71;MQ0=0;MQRankSum=0.272;QD=9.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:12,7:19:99:204,0,278
15    78208776    rs11633920    G    A    238.68    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.86;MQ0=0;MQRankSum=-0.039;QD=11.37;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:8,13:21:99:269,0,207
15    78208833    rs56082827    C    T    393.50    MQFilter40    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.366;MQ=34.86;MQ0=0;MQRankSum=-0.37;QD=7.72;ReadPosRankSum=-0.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:27,24:51:99:423,0,736
15    78208880    rs7182575    G    A    1765.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=38.28;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1799,147,0
15    78209131    rs7161792    T    C    41.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:72,0,24
15    78210475    rs4435227    G    A    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.29;MQ0=0;MQRankSum=-1.026;QD=9.5;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:2,2:4:58.38:68,0,58
15    78210491    rs4550415    A    C    75.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=52.38;MQ0=0;MQRankSum=1.231;QD=15.19;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:2,3:5:66.19:106,0,66
15    78210745    rs4886543    G    T    488.77    MQFilter40    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=120;Dels=0.0;FS=2.928;HRun=2;HaplotypeScore=2.951;MQ=21.61;MQ0=18;MQRankSum=-2.018;QD=4.07;ReadPosRankSum=1.03;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:58,62:120:99:519,0,664
15    78210765    rs4886966    G    A    963.65    MQFilter40    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=3.481;DB;DP=140;Dels=0.0;FS=3.788;HRun=0;HaplotypeScore=1.9301;MQ=26.57;MQ0=12;MQRankSum=-2.104;QD=6.88;ReadPosRankSum=0.409;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:61,78:140:99:994,0,958
15    78210883    .    C    T    900.14    MQFilter40    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.184;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.09;MQ0=0;MQRankSum=1.948;QD=10.72;ReadPosRankSum=0.515;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:44,40:84:99:930,0,978
15    78211007    rs4886967    G    C    200.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.52;MQ0=2;QD=13.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    1/1:0,15:15:21.05:234,21,0
15    78211079    rs12594768    T    G    327.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.04;MQ0=3;QD=17.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    1/1:0,19:19:33.09:360,33,0
15    78211148    rs12592276    C    T    481.40    MQFilter40    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.72;DB;DP=76;Dels=0.0;FS=4.15;HRun=1;HaplotypeScore=2.1593;MQ=33.18;MQ0=2;MQRankSum=0.501;QD=6.33;ReadPosRankSum=-0.289;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:36,40:76:99:511,0,311
15    78211164    rs56350880    G    A    1277.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.0343;MQ=35.35;MQ0=1;QD=14.52;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    1/1:1,87:88:99:1311,114,0
15    78211171    rs12592262    A    G    537.04    MQFilter40    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.919;DB;DP=94;Dels=0.0;FS=6.769;HRun=0;HaplotypeScore=2.5619;MQ=34.8;MQ0=1;MQRankSum=0.231;QD=5.71;ReadPosRankSum=-1.189;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:42,51:94:99:567,0,644
15    78211200    rs35577276    G    C    726.03    MQFilter40    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.456;DB;DP=138;Dels=0.0;FS=4.621;HRun=0;HaplotypeScore=1.6643;MQ=39.05;MQ0=1;MQRankSum=-3.538;QD=5.26;ReadPosRankSum=0.641;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:79,59:138:99:756,0,2036
15    78211339    rs71400918    T    C    1102.61    SnpCluster    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.835;DB;DP=197;Dels=0.0;FS=6.163;HRun=2;HaplotypeScore=3.824;MQ=48.3;MQ0=0;MQRankSum=-5.492;QD=5.6;ReadPosRankSum=0.843;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:126,70:197:99:1133,0,3767
15    78211344    rs144363575    C    T    944.66    SnpCluster    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=3.961;DB;DP=191;Dels=0.0;FS=6.23;HRun=0;HaplotypeScore=1.9721;MQ=47.91;MQ0=0;MQRankSum=-5.526;QD=4.95;ReadPosRankSum=0.729;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:121,70:191:99:975,0,3205
15    78211345    rs12592294    A    G    5213.66    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=191;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9721;MQ=48.21;MQ0=0;QD=27.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    1/1:0,191:191:99:5214,436,0
15    78211427    rs78547308    G    T    281.17    HaplotypeScoreFilter13    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=102;Dels=0.03;FS=5.206;HRun=0;HaplotypeScore=53.9883;MQ=49.08;MQ0=0;MQRankSum=-6.966;QD=2.68;ReadPosRankSum=1.05;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:73,28:102:99:311,0,2377
15    78211471    rs67630434    C    T    1229.67    HaplotypeScoreFilter13    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.391;DB;DP=126;Dels=0.0;FS=1.518;HRun=1;HaplotypeScore=17.5407;MQ=49.87;MQ0=0;MQRankSum=-2.954;QD=9.76;ReadPosRankSum=0.888;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:73,52:126:99:1260,0,2215
15    78211598    rs12908616    C    T    1403.15    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.423;DB;DP=135;Dels=0.0;FS=1.568;HRun=1;HaplotypeScore=0.9894;MQ=43.44;MQ0=7;MQRankSum=-0.275;QD=10.39;ReadPosRankSum=-1.744;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:77,58:135:99:1433,0,2079
15    78211801    rs4366682    C    G    66.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.38;MQ0=0;MQRankSum=1.309;QD=4.18;ReadPosRankSum=2.793;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:8,8:16:96.95:97,0,215
15    78211979    rs4530095    C    T    721.46    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.721;DB;DP=58;Dels=0.0;FS=6.646;HRun=0;HaplotypeScore=1.7883;MQ=35.38;MQ0=2;MQRankSum=-3.591;QD=12.44;ReadPosRankSum=-0.935;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:29,29:58:99:751,0,753
15    78212177    rs12913714    G    T    1653.36    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.721;DB;DP=96;Dels=0.0;FS=1.955;HRun=0;HaplotypeScore=1.8315;MQ=54.46;MQ0=0;MQRankSum=1.615;QD=17.22;ReadPosRankSum=0.806;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:39,57:96:99:1683,0,1144
15    78212605    rs4479193    T    C    604.51    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.888;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4404;MQ=37.8;MQ0=3;MQRankSum=-1.72;QD=7.37;ReadPosRankSum=-0.342;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:45,36:81:99:635,0,1045
15    78212644    rs4514642    G    A    459.44    MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.076;DB;DP=57;Dels=0.0;FS=1.328;HRun=1;HaplotypeScore=1.8305;MQ=39.06;MQ0=3;MQRankSum=-1.791;QD=8.06;ReadPosRankSum=0.062;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:31,26:57:99:489,0,839
15    78212654    rs28709127    T    G    511.48    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=52;Dels=0.0;FS=1.503;HRun=2;HaplotypeScore=1.8305;MQ=38.49;MQ0=3;MQRankSum=-1.775;QD=9.84;ReadPosRankSum=-0.537;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:26,26:52:99:541,0,652
15    78213760    rs4886968    C    T    1088.42    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.021;DB;DP=92;Dels=0.0;FS=7.812;HRun=0;HaplotypeScore=0.0;MQ=53.4;MQ0=1;MQRankSum=2.35;QD=11.83;ReadPosRankSum=0.589;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:51,41:92:99:1118,0,1416
15    78213768    rs12904130    C    A    1116.11    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.514;DB;DP=96;Dels=0.0;FS=4.172;HRun=1;HaplotypeScore=0.0;MQ=52.64;MQ0=2;MQRankSum=1.857;QD=11.63;ReadPosRankSum=1.565;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:57,39:96:99:1146,0,1712
15    78213834    rs4886969    C    T    1772.55    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.292;DB;DP=151;Dels=0.0;FS=1.41;HRun=1;HaplotypeScore=1.5782;MQ=54.13;MQ0=2;MQRankSum=2.327;QD=11.74;ReadPosRankSum=-0.401;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:84,67:151:99:1803,0,2482
15    78213975    rs4886970    T    A    2492.69    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.753;DB;DP=192;Dels=0.0;FS=11.167;HRun=0;HaplotypeScore=3.8382;MQ=53.14;MQ0=0;MQRankSum=-2.358;QD=12.98;ReadPosRankSum=0.057;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:97,94:192:99:2523,0,3023
15    78214075    rs4886971    T    C    2050.52    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.884;DB;DP=158;Dels=0.0;FS=1.293;HRun=1;HaplotypeScore=0.9916;MQ=57.92;MQ0=0;MQRankSum=-2.497;QD=12.9;ReadPosRankSum=0.057;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:82,76:158:99:2081,0,2488
15    78214221    rs4886972    A    G    557.10    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=45;Dels=0.0;FS=1.203;HRun=2;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=0.575;QD=12.38;ReadPosRankSum=-0.293;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC104758.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487317    GT:AD:DP:GQ:PL    0/1:23,22:45:99:587,0,719
15    78214312    rs4886973    A    G    705.15    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.012;DB;DP=69;Dels=0.0;FS=17.803;HRun=0;HaplotypeScore=0.8667;MQ=54.43;MQ0=0;MQRankSum=-0.069;QD=10.22;ReadPosRankSum=1.091;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,32:69:99:735,0,1281
15    78214375    rs4886974    T    C    1629.89    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DB;DP=130;Dels=0.0;FS=0.691;HRun=0;HaplotypeScore=2.9348;MQ=55.58;MQ0=0;MQRankSum=0.72;QD=12.54;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:68,60:130:99:1660,0,2085
15    78214612    rs4468574    G    A    300.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.73;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:334,27,0
15    78215590    rs4243070    A    T    321.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=21.41;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:33.08:354,33,0
15    78217119    rs11630442    C    T    34.71    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.09;MQ0=1;MQRankSum=-2.45;QD=3.16;ReadPosRankSum=-1.668;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,6:11:64.70:65,0,168
15    78217315    rs2004373    T    C    1192.44    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=113;Dels=0.0;FS=6.176;HRun=1;HaplotypeScore=0.9916;MQ=49.55;MQ0=1;MQRankSum=1.991;QD=10.55;ReadPosRankSum=-0.481;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:63,50:113:99:1222,0,1823
15    78217423    rs4073671    T    C    629.81    MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=101;Dels=0.0;FS=2.015;HRun=1;HaplotypeScore=3.0506;MQ=39.79;MQ0=1;MQRankSum=-0.796;QD=6.24;ReadPosRankSum=0.127;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:65,36:101:99:660,0,1700
15    78217442    rs4374138    T    C    2365.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5731;MQ=39.35;MQ0=1;QD=26.28;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,87:90:99:2398,201,0
15    78231874    rs4563013    G    C    64.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.14;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104758.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398727    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:95,0,30
15    78232240    rs12907147    G    C    288.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104758.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398727    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:322,27,0
15    78233843    rs4886547    C    T    197.67    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=43.47;MQ0=0;MQRankSum=-0.667;QD=14.12;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=R108H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78233784_78233864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104758.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398727    GT:AD:DP:GQ:PL    0/1:5,9:14:99:228,0,131
15    78234637    rs12899446    G    T    45.89    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=14;Dels=0.0;FS=2.774;HRun=0;HaplotypeScore=1.6567;MQ=43.79;MQ0=0;MQRankSum=1.09;QD=3.28;ReadPosRankSum=0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104758.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398727    GT:AD:DP:GQ:PL    0/1:11,3:14:75.88:76,0,339
15    78234836    rs11630788    C    T    277.39    MQFilter40    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.558;DB;DP=31;Dels=0.0;FS=13.877;HRun=1;HaplotypeScore=0.5784;MQ=24.21;MQ0=13;MQRankSum=1.759;QD=8.95;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104758.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398727    GT:AD:DP:GQ:PL    0/1:15,16:31:92.63:307,0,93
15    78269472    rs12906542    A    G    66.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.06;MQ0=0;MQRankSum=0.937;QD=9.55;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,4:7:96.85:97,0,107
15    78269731    rs11852862    G    T    206.24    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=34.83;MQ0=0;QD=6.87;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,29:30:21.06:239,21,0
15    78269737    rs11852790    A    T    130.86    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.05;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=27.29;MQ0=0;QD=6.54;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,19:19:17.99:164,18,0
15    78269738    rs11852821    C    T    130.86    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=27.29;MQ0=0;QD=6.54;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,20:20:17.99:164,18,0
15    78269747    rs11852867    G    A    134.43    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.85;MQ0=0;MQRankSum=-1.187;QD=6.72;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,19:20:15.04:167,15,0
15    78269760    rs71402931    C    T    130.13    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.37;MQ0=0;QD=6.2;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,21:21:18.01:163,18,0
15    78269762    rs78023616    C    T    113.22    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.37;MQ0=0;QD=5.39;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,20:21:17.96:146,18,0
15    78269763    rs75184028    A    G    113.22    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.37;MQ0=0;QD=5.39;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,21:21:17.96:146,18,0
15    78269793    rs67603081    CT    C    226.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=264.052;IndelType=D;MQ=27.01;MQ0=0;QD=18.9;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:4,8:10:21.07:269,21,0
15    78271217    rs11632062    G    C    229.31    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=44.13;MQ0=0;MQRankSum=0.715;QD=20.85;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,8:11:51.11:259,0,51
15    78272318    rs12439777    C    G    70.35    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=0.037;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9545;MQ=44.62;MQ0=3;MQRankSum=-0.261;QD=2.61;ReadPosRankSum=1.081;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:21,5:27:99:100,0,431
15    78272330    rs56081051    C    T    135.95    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.058;DB;DP=27;Dels=0.0;FS=1.707;HRun=1;HaplotypeScore=0.9578;MQ=44.93;MQ0=3;MQRankSum=-3.242;QD=5.04;ReadPosRankSum=-1.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:14,12:27:99:166,0,396
15    78272529    rs12595494    T    C    31.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9983;MQ=46.43;MQ0=0;MQRankSum=1.231;QD=6.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:3,2:5:61.33:61,0,98
15    78272536    rs12592934    A    C    57.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9983;MQ=46.43;MQ0=0;MQRankSum=0.358;QD=11.51;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:2,3:5:62.76:88,0,63
15    78273788    rs11072715    A    G    784.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=34.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:817,63,0
15    78278154    rs11072716    T    C    88.97    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=50.03;MQ0=0;MQRankSum=-2.945;QD=5.23;ReadPosRankSum=0.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:12,5:17:99:119,0,363
15    78278186    rs12372950    A    G    355.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=20;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=50.02;MQ0=0;MQRankSum=2.507;QD=17.76;ReadPosRankSum=1.427;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:8,12:20:99:385,0,214
15    78278253    rs10775213    T    C    448.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.28;MQ0=0;QD=28.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:0,16:16:39.10:481,39,0
15    78278264    rs10775214    G    T    426.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.04;MQ0=0;QD=25.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:0,17:17:36.11:460,36,0
15    78278724    rs12912014    C    T    208.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
15    78278764    rs60497311    C    T    97.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.421;QD=12.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:4,4:8:99:127,0,136
15    78278820    rs12439578    C    T    35.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=50.68;MQ0=0;MQRankSum=1.495;QD=5.13;ReadPosRankSum=-0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:5,2:7:65.93:66,0,140
15    78278875    rs62011469    T    C    173.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.41;MQ0=1;QD=19.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:0,9:9:18.04:206,18,0
15    78278925    rs11072718    T    C    78.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=19.05;MQ0=5;QD=7.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:3,8:11:9.03:111,9,0
15    78278928    rs11072719    T    C    112.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=20.06;MQ0=5;QD=9.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:3,9:12:12.04:145,12,0
15    78278964    rs11072720    T    G    103.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=15.5;MQ0=11;QD=6.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:6,9:15:12.03:136,12,0
15    78278974    rs74029745    T    C    54.40    MQFilter40    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=17;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=15.51;MQ0=12;MQRankSum=0.358;QD=3.2;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:13,4:17:48.02:84,0,48
15    78278986    rs62011470    G    A    91.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.26;MQ0=14;QD=4.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:9,10:19:12.01:124,12,0
15    78278996    rs111840153    T    A    90.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.72;MQ0=18;QD=4.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:12,10:22:12.01:123,12,0
15    78279124    rs28494058    T    C    62.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.98;MQ0=6;QD=5.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:6,6:12:9.02:95,9,0
15    78279229    rs28560025    A    G    184.21    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DB;DP=27;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=0.0;MQ=43.82;MQ0=1;MQRankSum=-2.714;QD=6.82;ReadPosRankSum=-0.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:16,11:27:99:214,0,439
15    78279233    rs28392705    C    G    211.43    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=31;Dels=0.0;FS=7.204;HRun=1;HaplotypeScore=0.0;MQ=43.24;MQ0=1;MQRankSum=-2.668;QD=6.82;ReadPosRankSum=0.086;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:19,12:31:99:241,0,495
15    78279286    rs11633290    C    T    718.39    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=48;Dels=0.0;FS=2.745;HRun=0;HaplotypeScore=0.0;MQ=50.71;MQ0=1;MQRankSum=2.937;QD=14.97;ReadPosRankSum=0.183;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:21,27:48:99:748,0,481
15    78279314    rs12592891    G    A    395.02    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=47;Dels=0.0;FS=1.167;HRun=1;HaplotypeScore=0.0;MQ=53.14;MQ0=1;MQRankSum=-1.482;QD=8.4;ReadPosRankSum=-0.724;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:26,21:47:99:425,0,710
15    78280129    rs7495018    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:2,2:4:60.19:72,0,60
15    78280170    rs34940027    T    C    33.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=4.84;ReadPosRankSum=1.537;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    0/1:4,3:7:63.86:64,0,74
15    78280404    rs7163997    C    T    107.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465531    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:140,12,0
15    78301664    rs1004855    G    C    32.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.69;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300584    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:62,0,33
15    78316386    rs1992470    T    A    117.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.9958;MQ=54.65;MQ0=0;MQRankSum=1.001;QD=13.04;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435468    GT:AD:DP:GQ:PL    0/1:3,6:9:86.73:147,0,87
15    78337225    rs4886995    G    A    1023.63    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.865;DB;DP=75;Dels=0.0;FS=5.467;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=13.65;ReadPosRankSum=-0.639;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482562    GT:AD:DP:GQ:PL    0/1:40,35:75:99:1054,0,1365
15    78346728    rs4886997    C    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300584    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
15    78386264    rs8028378    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328828    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
15    78390414    rs2289524    T    C    1272.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.89;MQ0=0;QD=30.3;SNPEFF_AMINO_ACID_CHANGE=M1T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_15_78390271_78390436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D7;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000409568    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1305,114,0
15    78390909    rs12593575    C    T    874.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=57.89;MQ0=0;QD=30.16;SNPEFF_AMINO_ACID_CHANGE=R206W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78390726_78390938;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328828    GT:AD:DP:GQ:PL    1/1:0,28:29:69.22:908,69,0
15    78398230    rs34057735    C    T    467.94    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=36;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.544;QD=13.0;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=T131;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78398081_78398276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258930    GT:AD:DP:GQ:PL    0/1:20,16:36:99:498,0,507
15    78401534    rs3214707    T    TC    369.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=5;HaplotypeScore=109.2548;IndelType=I;MQ=55.21;MQ0=0;QD=24.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328828    GT:AD:DP:GQ:PL    1/1:4,11:15:35.35:412,35,0
15    78401540    rs76396091    A    C    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=10.973;MQ=56.85;MQ0=0;QD=2.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328828    GT:AD:DP:GQ:PL    1/1:0,15:15:6.02:70,6,0
15    78401620    rs77370542    C    T    454.24    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DB;DP=35;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.09;QD=12.98;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=S101;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78401577_78401724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258930    GT:AD:DP:GQ:PL    0/1:19,16:35:99:484,0,470
15    78423479    rs8040395    T    C    226.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258930    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:259,21,0
15    78471320    rs2868606    C    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258873    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    78557086    rs146955745    GC    G    131.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=8;HaplotypeScore=15.631;IndelType=D;MQ=56.04;MQ0=0;QD=21.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343789    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:174,18,0
15    78558509    rs2037347    G    A    650.34    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.148;DB;DP=45;Dels=0.0;FS=2.28;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.239;QD=14.45;ReadPosRankSum=0.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489435    GT:AD:DP:GQ:PL    0/1:24,21:45:99:680,0,801
15    78562693    rs3743084    A    G    201.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.005;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=13.45;ReadPosRankSum=-0.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489435    GT:AD:DP:GQ:PL    0/1:6,9:15:99:232,0,200
15    78563103    rs3169166    A    C    326.76    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.347;QD=16.34;ReadPosRankSum=0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489435    GT:AD:DP:GQ:PL    0/1:8,12:20:99:357,0,271
15    78565414    rs11629630    A    G    1060.65    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.463;DB;DP=83;Dels=0.0;FS=1.942;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.516;QD=12.78;ReadPosRankSum=0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343789    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1091,0,1322
15    78567675    rs967820    C    T    120.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419495    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
15    78567853    rs967821    G    T    129.99    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.064;DB;DP=29;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.688;QD=4.48;ReadPosRankSum=-0.025;SNPEFF_AMINO_ACID_CHANGE=G193;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78567840_78568070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446172    GT:AD:DP:GQ:PL    0/1:22,7:29:99:160,0,759
15    78572359    rs9806426    C    G    1276.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=32.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485075    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1309,99,0
15    78578482    rs3832993    TG    T    380.15    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DB;DP=24;FS=2.969;HRun=3;HaplotypeScore=57.7531;IndelType=D;MQ=60.45;MQ0=0;MQRankSum=0.471;QD=15.84;ReadPosRankSum=-0.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343789    GT:AD:DP:GQ:PL    0/1:11,13:24:99:419,0,283
15    78581892    rs1879153    C    T    397.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267973    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:431,33,0
15    78581938    rs16969675    C    A    162.36    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.433;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=5.8;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267973    GT:AD:DP:GQ:PL    0/1:21,7:28:99:192,0,717
15    78585433    rs2280365    C    A    418.39    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.333;QD=18.19;ReadPosRankSum=-1.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267973    GT:AD:DP:GQ:PL    0/1:10,13:23:99:448,0,346
15    78587910    rs1040262    A    G    190.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000267973    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:223,18,0
15    78632830    rs1127472    C    G    209.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.19;MQ0=0;QD=23.26;SNPEFF_AMINO_ACID_CHANGE=L20;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78632666_78632840;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRABP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299529    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:242,18,0
15    78633595    rs2139440    T    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRABP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299529    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    78730591    rs954144    C    T    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=-1.026;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_15_78730531_78730698;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    0/1:2,2:4:55.71:71,0,56
15    78757913    rs2938674    C    A    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
15    78758677    rs2958720    G    C    1357.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_AMINO_ACID_CHANGE=V159L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78758613_78758831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1390,102,0
15    78758853    rs2938672    A    C    665.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=28.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    1/1:0,23:23:57.15:698,57,0
15    78758902    rs11372841    T    TC    497.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=53.7829;IndelType=I;MQ=60.9;MQ0=0;QD=41.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:540,36,0
15    78777312    rs9788758    G    A    806.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:839,60,0
15    78780104    rs2230940    T    C    580.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=I580T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78780075_78780159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:614,48,0
15    78783355    .    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    78786410    rs4887060    A    C    2678.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2711,202,0
15    78789488    rs13180    C    T    539.83    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.29;DB;DP=39;Dels=0.0;FS=6.983;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.436;QD=13.84;ReadPosRankSum=0.014;SNPEFF_AMINO_ACID_CHANGE=A872;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78789468_78789653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IREB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258886    GT:AD:DP:GQ:PL    0/1:20,19:39:99:570,0,612
15    78819606    rs12903129    C    T    34.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9916;MQ=47.12;MQ0=0;MQRankSum=0.736;QD=8.61;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388988    GT:AD:DP:GQ:PL    0/1:1,2:4:33.62:64,0,34
15    78825498    rs12907169    G    C    130.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.259;QD=10.85;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388988    GT:AD:DP:GQ:PL    0/1:6,6:12:99:160,0,217
15    78825562    rs12906951    C    T    238.77    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.403;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.899;QD=10.38;ReadPosRankSum=-0.341;SNPEFF_AMINO_ACID_CHANGE=H224;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78825552_78826012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388988    GT:AD:DP:GQ:PL    0/1:13,10:23:99:269,0,402
15    78834689    rs2292117    A    G    432.82    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DB;DP=25;Dels=0.0;FS=7.562;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.416;QD=17.31;ReadPosRankSum=-0.305;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGPHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408962    GT:AD:DP:GQ:PL    0/1:10,15:25:99:463,0,322
15    78836631    rs67437837    CTGA    C    240.88    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.32;DB;DP=24;FS=5.935;HRun=0;HaplotypeScore=122.5419;IndelType=D;MQ=53.55;MQ0=0;MQRankSum=-1.231;QD=10.04;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000044462    GT:AD:DP:GQ:PL    0/1:16,8:24:99:280,0,876
15    78837801    rs4887062    G    A    72.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.35;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000044462    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,118
15    78839110    rs67461503    CT    C    62.83    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=27;FS=3.468;HRun=16;HaplotypeScore=161.1062;IndelType=D;MQ=55.76;MQ0=0;MQRankSum=1.14;QD=2.33;ReadPosRankSum=-0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000044462    GT:AD:DP:GQ:PL    0/1:19,7:27:99:102,0,161
15    78841220    rs8053    T    C    1155.50    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.412;DB;DP=85;Dels=0.0;FS=0.831;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.492;QD=13.59;ReadPosRankSum=0.707;SNPEFF_AMINO_ACID_CHANGE=H169;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78841132_78841560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413382    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1185,0,1371
15    78873119    rs569207    C    T    1355.18    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.411;DB;DP=97;Dels=0.0;FS=1.765;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.487;QD=13.97;ReadPosRankSum=0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299565    GT:AD:DP:GQ:PL    0/1:47,50:97:99:1385,0,1431
15    78879242    rs555018    G    A    364.36    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.225;QD=19.18;ReadPosRankSum=0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299565    GT:AD:DP:GQ:PL    0/1:7,12:19:99:394,0,221
15    78894759    rs3743078    C    G    75.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.79;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326828    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:105,0,29
15    78909452    rs3743075    T    C    220.12    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=2.267;QD=15.72;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=K97;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78909366_78909475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326828    GT:AD:DP:GQ:PL    0/1:5,9:14:99:250,0,138
15    78909480    rs3743074    G    A    184.81    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=18.48;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326828    GT:AD:DP:GQ:PL    0/1:3,7:10:95.95:215,0,96
15    78909539    rs3743073    G    T    78    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.5;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326828    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:108,0,30
15    78911261    rs2869547    T    C    917.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.37;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326828    GT:AD:DP:GQ:PL    1/1:0,30:30:81.19:950,81,0
15    78917399    rs1948    A    G    361.54    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.321;DB;DP=33;Dels=0.0;FS=2.127;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.392;QD=10.96;ReadPosRankSum=0.054;SNPEFF_AMINO_ACID_CHANGE=A198;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_78916636_78917633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412074    GT:AD:DP:GQ:PL    0/1:18,15:33:99:392,0,535
15    78923845    rs28534575    T    G    39.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.81;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261751    GT:AD:DP:GQ:PL    0/1:3,2:5:69.04:69,0,73
15    79024355    rs34099810    A    G    1394.89    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=89;Dels=0.0;FS=12.95;HRun=1;HaplotypeScore=2.6632;MQ=55.88;MQ0=0;MQRankSum=1.506;QD=15.67;ReadPosRankSum=1.498;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:44,45:89:99:1425,0,1459
15    79024766    rs11072797    A    T    4248.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=44.43;MQ0=1;QD=29.3;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,144:145:99:4248,322,0
15    79024784    rs9920207    G    A    3914.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8279;MQ=42.4;MQ0=1;QD=28.37;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,136:138:99:3915,304,0
15    79024805    rs11072798    T    G    3040.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.445;MQ=39.47;MQ0=1;QD=25.55;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,118:119:99:3074,271,0
15    79024949    rs4887081    C    T    2384.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=38.81;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2418,196,0
15    79026069    rs2415186    A    G    780.63    MQFilter40    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7351;MQ=38.94;MQ0=3;MQRankSum=-0.993;QD=9.41;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:45,38:83:99:811,0,1098
15    79027561    rs67775542    A    G    408.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6648;MQ=55.54;MQ0=0;MQRankSum=0.849;QD=15.7;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,14:26:99:438,0,415
15    79027814    rs11072799    G    T    900.85    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.524;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6626;MQ=58.49;MQ0=0;MQRankSum=0.903;QD=14.08;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,33:64:99:931,0,900
15    79045517    rs34816637    G    A    309.11    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.507;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=48.89;MQ0=0;MQRankSum=-4.321;QD=8.83;ReadPosRankSum=-0.944;SNPEFF_AMINO_ACID_CHANGE=R65Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79045455_79045715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022748.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434914    GT:AD:DP:GQ:PL    0/1:19,16:35:99:339,0,568
15    79045521    rs12917502    T    C    273.99    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=34;Dels=0.0;FS=3.452;HRun=0;HaplotypeScore=0.9332;MQ=49.45;MQ0=0;MQRankSum=-3.972;QD=8.06;ReadPosRankSum=-0.122;SNPEFF_AMINO_ACID_CHANGE=R66;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79045455_79045715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022748.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434914    GT:AD:DP:GQ:PL    0/1:20,14:34:99:304,0,655
15    79051716    rs184659738    G    A    35.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.358;QD=7.1;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:3,2:5:65.50:65,0,100
15    79051721    rs1045130    G    A    96.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-1.38;QD=16.08;ReadPosRankSum=0.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:2,4:6:59.57:126,0,60
15    79058013    rs2929155    C    T    463.43    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.94;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=50.63;MQ0=2;MQRankSum=-3.404;QD=8.58;ReadPosRankSum=0.798;SNPEFF_AMINO_ACID_CHANGE=G1414S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79057987_79059393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:29,24:54:99:493,0,781
15    79058572    rs1809421    T    G    668.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.84;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=R1227;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79057987_79059393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    1/1:0,21:21:60.12:702,60,0
15    79058923    rs1809422    G    A    337.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.23;MQ0=0;QD=22.51;SNPEFF_AMINO_ACID_CHANGE=P1110;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79057987_79059393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    1/1:1,14:15:30.06:371,30,0
15    79059449    rs1810165    G    A    163.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.23;MQ0=0;QD=20.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:196,15,0
15    79065562    rs8036224    A    G    117.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=25.47;MQ0=3;QD=14.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:150,12,0
15    79066653    rs57708073    A    G    68.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=0.0;QD=7.61;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:5,4:9:98.49:98,0,124
15    79066932    rs12900168    A    G    122.90    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9998;MQ=54.4;MQ0=1;MQRankSum=-3.567;QD=3.61;ReadPosRankSum=1.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:26,8:34:99:153,0,710
15    79066940    rs77513133    A    G    117.09    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=0.072;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9998;MQ=55.0;MQ0=1;MQRankSum=-3.549;QD=3.44;ReadPosRankSum=2.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:26,7:33:99:147,0,835
15    79066953    .    G    A    71.76    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DP=36;Dels=0.0;FS=1.96;HRun=0;HaplotypeScore=0.0;MQ=55.29;MQ0=1;MQRankSum=-3.637;QD=1.99;ReadPosRankSum=2.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:29,7:36:99:102,0,905
15    79069734    rs7161774    G    T    128.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
15    79080798    rs3743058    C    T    623.66    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=3.584;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=59.31;MQ0=0;MQRankSum=0.133;QD=23.1;ReadPosRankSum=-1.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:8,19:27:99:654,0,176
15    79083120    rs2127898    G    A    571.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.459;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=47.89;MQ0=0;MQRankSum=-3.816;QD=11.0;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=T307M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79083012_79083136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    0/1:26,26:52:99:602,0,687
15    79089007    rs3743057    T    C    2813.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7172;MQ=59.02;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=V248;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79088932_79089128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2846,223,0
15    79092481    rs3971703    G    C    267.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:301,27,0
15    79092603    rs6495329    G    A    388.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=H129;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79092534_79092889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388820    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:421,33,0
15    79172744    rs11852969    C    T    246.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORF4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331268    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
15    79177460    rs16970187    C    G    525.43    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.187;DB;DP=34;Dels=0.0;FS=1.554;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=1.067;QD=15.45;ReadPosRankSum=1.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORF4L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331268    GT:AD:DP:GQ:PL    0/1:15,19:34:99:555,0,467
15    79215247    rs2289692    C    T    148.15    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.792;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.84;MQ0=0;MQRankSum=-0.238;QD=7.41;ReadPosRankSum=-0.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527138    GT:AD:DP:GQ:PL    0/1:13,7:20:99:178,0,423
15    79217690    rs2044226    G    C    855.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_AMINO_ACID_CHANGE=T252;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79217676_79217782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394758    GT:AD:DP:GQ:PL    1/1:0,29:29:72.21:889,72,0
15    79223681    rs2289699    G    A    37.77    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.715;QD=3.43;ReadPosRankSum=0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444399    GT:AD:DP:GQ:PL    0/1:8,3:11:67.76:68,0,247
15    79231478    rs12148472    T    C    833.21    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.519;DB;DP=62;Dels=0.0;FS=1.03;HRun=1;HaplotypeScore=0.8667;MQ=59.63;MQ0=0;MQRankSum=0.74;QD=13.44;ReadPosRankSum=0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220166    GT:AD:DP:GQ:PL    0/1:27,35:62:99:863,0,769
15    79231518    rs11638844    A    G    586.22    HaplotypeScoreFilter13    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.175;DB;DP=52;Dels=0.0;FS=5.139;HRun=0;HaplotypeScore=21.7098;MQ=58.75;MQ0=0;MQRankSum=-0.74;QD=11.27;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220166    GT:AD:DP:GQ:PL    0/1:27,25:52:99:616,0,742
15    79231523    rs71706509    G    GA    503.70    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.378;DB;DP=49;FS=13.202;HRun=10;HaplotypeScore=265.6454;IndelType=I;MQ=58.67;MQ0=0;MQRankSum=-0.143;QD=10.28;ReadPosRankSum=-0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220166    GT:AD:DP:GQ:PL    0/1:28,21:49:99:543,0,369
15    79231616    rs10400902    A    G    111.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=15.92;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220166    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,103
15    79237324    rs1036939    C    A    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528741    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
15    79254480    rs4778732    T    A    159.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:192,15,0
15    79264082    rs4238513    A    G    391.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:425,36,0
15    79264097    rs4238514    G    A    540.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=36.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:574,42,0
15    79265866    rs3743195    G    A    327.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
15    79273098    rs2278650    C    G    474.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011944.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316148    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:508,39,0
15    79277150    rs3840034    A    AC    246.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=21.84;IndelType=I;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:288,18,0
15    79277247    rs4778750    A    C    783.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:1,24:25:60.20:816,60,0
15    79277298    rs3803544    T    C    780.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.609;QD=27.89;ReadPosRankSum=-0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:1,27:28:40.56:814,41,0
15    79277511    rs2230518    A    G    988.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.973;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.428;QD=30.88;ReadPosRankSum=1.674;SNPEFF_AMINO_ACID_CHANGE=N1084;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79277349_79277546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:2,30:32:39.50:1021,39,0
15    79277608    rs4778751    G    A    466.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:500,36,0
15    79287803    rs8033780    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    79288011    rs6495359    A    C    816.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:850,63,0
15    79288420    rs4778764    T    C    82.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
15    79296172    rs1562008    G    A    621.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=P39;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79296144_79296517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394745    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:654,48,0
15    79296648    rs3825929    T    A    185.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:218,18,0
15    79324419    rs2304991    A    G    284.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:318,27,0
15    79327686    rs736554    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
15    79350422    rs62011243    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
15    79350624    rs16970524    G    A    907.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394741    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:940,72,0
15    79502096    rs12903401    G    C    280.68    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=14.77;ReadPosRankSum=0.449;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR184;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384962    GT:AD:DP:GQ:PL    0/1:9,10:19:99:311,0,293
15    79605948    rs7170565    T    C    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299705    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
15    79606137    rs3825933    G    A    1884.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=34.27;SNPEFF_AMINO_ACID_CHANGE=V69;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79606099_79606347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299705    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1918,147,0
15    79606408    rs3784544    C    T    577.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299705    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:611,48,0
15    79614206    rs906440    T    A    450.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299705    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:484,36,0
15    79614224    rs8037898    A    G    240.66    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=17;Dels=0.0;FS=3.274;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.684;QD=14.16;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299705    GT:AD:DP:GQ:PL    0/1:9,8:17:99:271,0,306
15    79614418    rs906439    A    G    1907.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79614320_79615189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299705    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1940,156,0
15    79750307    rs1004724    T    C    1891.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=I606;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79748440_79750787;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1024;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305428    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1925,153,0
15    79755604    rs2297773    A    G    501.16    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.357;DB;DP=43;Dels=0.0;FS=1.206;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.673;QD=11.65;ReadPosRankSum=0.208;SNPEFF_AMINO_ACID_CHANGE=I832V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_79755409_79755663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1024;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305428    GT:AD:DP:GQ:PL    0/1:24,19:43:99:531,0,734
15    79755685    rs3831283    GGT    G    136.59    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=2.76;DB;DP=18;FS=5.563;HRun=0;HaplotypeScore=59.7468;IndelType=D;MQ=58.71;MQ0=0;MQRankSum=0.197;QD=7.59;ReadPosRankSum=0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1024;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305428    GT:AD:DP:GQ:PL    0/1:13,5:18:99:176,0,650
15    80137560    rs8923    T    C    782.83    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=3.86;DB;DP=58;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.871;QD=13.5;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=T202A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_80137318_80137784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258874    GT:AD:DP:GQ:PL    0/1:30,28:58:99:813,0,959
15    80191343    rs7257    G    A    739.45    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.057;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.128;QD=10.72;ReadPosRankSum=-0.202;SNPEFF_AMINO_ACID_CHANGE=P57L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_80191185_80191467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322484    GT:AD:DP:GQ:PL    0/1:41,28:69:99:769,0,1393
15    80215300    rs2733102    T    C    810.63    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=65;Dels=0.0;FS=1.082;HRun=0;HaplotypeScore=1.1567;MQ=58.57;MQ0=0;MQRankSum=0.65;QD=12.47;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322484    GT:AD:DP:GQ:PL    0/1:27,37:65:99:841,0,623
15    80412579    rs1916048    C    T    415.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261749    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:448,36,0
15    80413935    rs934003    C    T    320.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261749    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:354,27,0
15    80414173    rs1522636    C    G    619.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFAND6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261749    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:653,48,0
15    80450328    rs1370276    T    C    450.10    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=29;Dels=0.0;FS=3.485;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.373;QD=15.52;ReadPosRankSum=-0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    0/1:13,16:29:99:480,0,417
15    80450389    rs1370275    G    A    1037.98    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=4.618;DB;DP=59;Dels=0.0;FS=1.207;HRun=0;HaplotypeScore=0.9999;MQ=59.61;MQ0=0;MQRankSum=0.525;QD=17.59;ReadPosRankSum=2.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    0/1:27,32:59:99:1068,0,765
15    80452075    rs1370274    T    C    519.36    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=45;Dels=0.0;FS=2.6;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.224;QD=11.54;ReadPosRankSum=1.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    0/1:24,21:45:99:549,0,793
15    80452268    rs1370273    G    A    65.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.19;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    0/1:5,3:8:95.48:95,0,183
15    80452886    rs733679    T    G    221.14    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=11.06;ReadPosRankSum=1.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    0/1:11,9:20:99:251,0,375
15    80454745    rs2114716    T    C    730.83    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.414;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=22.15;ReadPosRankSum=0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    0/1:12,21:33:99:761,0,342
15    80460524    rs1545119    A    G    1582.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.01;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1615,123,0
15    80465248    rs58363292    GA    G    704.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=57.1472;IndelType=D;MQ=59.36;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:747,54,0
15    80467162    rs11072883    A    G    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
15    80472431    rs2043691    C    A    540.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261755    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:573,42,0
15    80743350    rs2278708    C    T    732.59    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=4.162;DB;DP=48;Dels=0.0;FS=4.139;HRun=0;HaplotypeScore=2.4551;MQ=58.55;MQ0=0;MQRankSum=-0.396;QD=15.26;ReadPosRankSum=-1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303329    GT:AD:DP:GQ:PL    0/1:21,26:48:99:763,0,628
15    80762526    rs34883643    TC    T    634.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=5;HaplotypeScore=51.3157;IndelType=D;MQ=61.6;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303329    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:677,60,0
15    80767141    rs11852674    G    A    277.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303329    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:310,24,0
15    80806183    rs11072922    T    C    291.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=22.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303329    GT:AD:DP:GQ:PL    1/1:0,12:13:27.03:325,27,0
15    80844858    rs73494721    G    A    110.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.421;QD=13.86;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303329    GT:AD:DP:GQ:PL    0/1:4,4:8:88.96:141,0,89
15    80867550    rs72732085    A    G    421.57    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.716;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.17;MQ0=0;MQRankSum=0.814;QD=15.06;ReadPosRankSum=0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ARNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303329    GT:AD:DP:GQ:PL    0/1:11,16:28:99:452,0,381
15    81187194    rs142904834    C    A    164.24    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=10.27;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1199;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220244    GT:AD:DP:GQ:PL    0/1:10,6:16:99:194,0,364
15    81188137    rs75139019    G    A    174.90    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=58.05;MQ0=0;MQRankSum=-1.034;QD=14.58;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1199;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220244    GT:AD:DP:GQ:PL    0/1:4,7:12:99:205,0,137
15    81199236    rs2271164    A    G    88.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1199;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220244    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:121,9,0
15    81212608    rs1553647    G    A    1243.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=P657;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_81212435_81212640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1199;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000220244    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1277,96,0
15    81217848    rs2271163    C    T    73.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.19;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1199;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220244    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,110
15    81234741    rs1553646    C    G    495.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1199;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000220244    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:529,42,0
15    81271406    rs8039384    C    A    296.51    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.723;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=12.35;ReadPosRankSum=-1.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MESDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422879    GT:AD:DP:GQ:PL    0/1:13,11:24:99:326,0,473
15    81271557    rs8039607    C    A    872.38    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.05;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.711;QD=14.07;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MESDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422879    GT:AD:DP:GQ:PL    0/1:30,32:62:99:902,0,922
15    81281900    rs56314660    G    A    330.51    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.02;DB;DP=33;Dels=0.0;FS=1.573;HRun=0;HaplotypeScore=0.9999;MQ=59.3;MQ0=0;MQRankSum=-0.741;QD=10.02;ReadPosRankSum=1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MESDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261758    GT:AD:DP:GQ:PL    0/1:19,14:33:99:361,0,521
15    81430287    rs80206514    C    CA    394.58    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=19;FS=0.0;HRun=6;HaplotypeScore=38.158;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-2.149;QD=20.77;ReadPosRankSum=2.149;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286732    GT:AD:DP:GQ:PL    0/1:6,13:19:99:434,0,127
15    81440147    rs11395672    C    CA    75.57    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=25.8525;IndelType=I;MQ=60.9;MQ0=0;MQRankSum=0.529;QD=6.3;ReadPosRankSum=-1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286732    GT:AD:DP:GQ:PL    0/1:7,5:12:99:115,0,127
15    81571849    rs59298568    T    A    208.70    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=11;Dels=0.0;FS=8.195;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=18.97;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302987    GT:AD:DP:GQ:PL    0/1:3,8:11:84.83:239,0,85
15    81577808    rs8023541    T    C    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302987    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
15    81578189    rs75838746    A    G    1359.60    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=0.187;DB;DP=93;Dels=0.0;FS=6.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.976;QD=14.62;ReadPosRankSum=-1.242;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302987    GT:AD:DP:GQ:PL    0/1:47,46:93:99:1390,0,1466
15    81582868    rs8031107    G    A    1154.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_AMINO_ACID_CHANGE=Q301;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_81582794_81582881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355368    GT:AD:DP:GQ:PL    1/1:0,34:34:87.26:1187,87,0
15    81589448    rs17875502    G    A    439.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394655    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:473,36,0
15    81598593    rs17875581    T    C    625.83    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.805;QD=18.96;ReadPosRankSum=-2.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302824    GT:AD:DP:GQ:PL    0/1:12,21:33:99:656,0,385
15    81600995    rs4238526    A    G    3222.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=L1116;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_81600946_81601436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355368    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3255,238,0
15    81610592    rs4503751    A    C    80.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394660    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:111,0,27
15    81610902    rs4617815    T    C    314.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.636;QD=22.46;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394660    GT:AD:DP:GQ:PL    0/1:4,10:14:99:344,0,127
15    81611982    rs8024824    A    T    319.18    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.62;MQ0=0;MQRankSum=1.061;QD=22.8;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302824    GT:AD:DP:GQ:PL    0/1:4,10:14:99:349,0,106
15    81614669    rs74028610    C    A    247.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=15;Dels=0.0;FS=4.472;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.12;QD=16.51;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302824    GT:AD:DP:GQ:PL    0/1:6,9:15:99:278,0,154
15    81624768    rs4417518    C    T    909.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_AMINO_ACID_CHANGE=D1099N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_81624553_81625603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    1/1:0,30:30:69.23:942,69,0
15    81625028    rs8031046    C    T    161.03    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.191;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.889;QD=6.71;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=R1012K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_81624553_81625603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:17,7:24:99:191,0,564
15    81625385    rs11636318    C    T    1930.54    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.941;DB;DP=158;Dels=0.0;FS=3.82;HRun=0;HaplotypeScore=0.8321;MQ=59.85;MQ0=0;MQRankSum=-0.039;QD=12.22;ReadPosRankSum=-0.339;SNPEFF_AMINO_ACID_CHANGE=C893Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_81624553_81625603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:87,71:158:99:1961,0,2570
15    81627447    rs6495564    G    A    86.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=1.368;QD=10.8;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:4,4:8:99:116,0,128
15    81630421    rs3922930    G    A    68.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=9.73;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:4,3:7:24.94:98,0,25
15    81631681    rs4489964    C    T    1712.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1746,129,0
15    81632077    rs4077174    A    C    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,71
15    81636267    rs7161991    C    T    3049.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.46;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=E546;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_81636258_81636386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3083,232,0
15    81636476    rs28605554    T    C    266.62    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=25;Dels=0.0;FS=14.075;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.333;QD=10.66;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:13,12:25:99:297,0,469
15    81637284    rs4278705    G    A    1166.58    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DB;DP=92;Dels=0.0;FS=9.007;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-1.012;QD=12.68;ReadPosRankSum=0.314;SNPEFF_AMINO_ACID_CHANGE=A447;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_81637107_81637352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1197,0,1527
15    81637404    rs117886930    C    T    240.92    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.882;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.33;QD=7.53;ReadPosRankSum=0.726;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:22,10:32:99:271,0,612
15    81641549    rs13329328    C    G    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.37;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,108
15    81642028    rs9630439    C    T    111.75    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=16;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=-0.227;QD=6.98;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:11,5:16:99:142,0,310
15    81643915    rs9972519    A    G    263.50    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.71;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=13.87;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:9,10:19:99:293,0,268
15    81644314    rs9972530    A    T    133.61    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.66;QD=10.28;ReadPosRankSum=-2.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:7,6:13:99:164,0,227
15    81649001    rs7167034    T    C    442.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:476,39,0
15    81651003    rs7178648    G    A    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
15    81651651    rs12903128    G    A    542.97    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=4.817;DB;DP=36;Dels=0.0;FS=9.739;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.19;QD=15.08;ReadPosRankSum=1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:17,19:36:99:573,0,515
15    81654757    rs5814058    T    TG    152.85    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=22.2626;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-2.637;QD=13.9;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:6,5:11:99:192,0,201
15    81666529    rs11634486    G    A    37.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.45;ReadPosRankSum=-1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359440    GT:AD:DP:GQ:PL    0/1:2,2:4:56.30:68,0,56
15    82335444    rs11073028    G    A    281.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEX3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329713    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
15    82431219    rs2457497    A    G    537.73    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=-1.142;QD=15.36;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268206    GT:AD:DP:GQ:PL    0/1:16,19:35:99:568,0,482
15    82443939    rs4725    G    A    1289.68    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=97;Dels=0.0;FS=0.779;HRun=1;HaplotypeScore=2.4521;MQ=59.76;MQ0=0;MQRankSum=2.133;QD=13.3;ReadPosRankSum=0.255;SNPEFF_AMINO_ACID_CHANGE=D901;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82443806_82444764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359445    GT:AD:DP:GQ:PL    0/1:53,43:97:99:1320,0,1576
15    82444437    rs905450    A    G    680.44    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=61;Dels=0.0;FS=7.245;HRun=0;HaplotypeScore=0.8321;MQ=59.39;MQ0=0;MQRankSum=-1.005;QD=11.15;ReadPosRankSum=-0.77;SNPEFF_AMINO_ACID_CHANGE=G735;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82443806_82444764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359445    GT:AD:DP:GQ:PL    0/1:36,25:61:99:710,0,1175
15    82444663    rs2292071    T    C    1624.77    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.132;DB;DP=121;Dels=0.0;FS=3.296;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.92;QD=13.43;ReadPosRankSum=0.324;SNPEFF_AMINO_ACID_CHANGE=K660R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82443806_82444764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359445    GT:AD:DP:GQ:PL    0/1:62,59:121:99:1655,0,1946
15    82456227    rs1128431    T    C    479.14    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.014;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.51;QD=17.11;ReadPosRankSum=0.364;SNPEFF_AMINO_ACID_CHANGE=I566V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82456194_82456325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359445    GT:AD:DP:GQ:PL    0/1:13,15:28:99:509,0,381
15    82512429    rs2292189    C    G    2603.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7046;MQ=54.45;MQ0=0;QD=25.03;SNPEFF_AMINO_ACID_CHANGE=E427D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82512419_82512570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359445    GT:AD:DP:GQ:PL    1/1:0,103:104:99:2636,243,0
15    82545214    rs4344697    A    T    626.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.35;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268206    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:660,51,0
15    82563991    rs16973457    C    T    624.28    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.777;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.81;MQ=59.3;MQ0=0;MQRankSum=0.633;QD=18.92;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=P19L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82563944_82564143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM154B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427381    GT:AD:DP:GQ:PL    0/1:15,18:33:99:654,0,466
15    82574879    rs11630197    T    C    843.49    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.695;DB;DP=43;Dels=0.0;FS=4.732;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;MQRankSum=0.777;QD=19.62;ReadPosRankSum=0.803;SNPEFF_AMINO_ACID_CHANGE=W210R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82574460_82575769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM154B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427381    GT:AD:DP:GQ:PL    0/1:15,28:43:99:873,0,427
15    82620272    rs141755317    A    T    152.18    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=32.52;MQ0=0;MQRankSum=1.309;QD=12.68;ReadPosRankSum=-0.529;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC139425.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438558    GT:AD:DP:GQ:PL    0/1:5,7:12:89.96:182,0,90
15    82620590    rs78476694    G    A    104.39    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.574;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.99;MQ0=1;MQRankSum=-1.525;QD=3.48;ReadPosRankSum=-0.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC139425.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438558    GT:AD:DP:GQ:PL    0/1:20,10:30:99:134,0,365
15    82620683    .    A    G    85.67    MQFilter40    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.43;MQ0=1;QD=8.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC139425.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438558    GT:AD:DP:GQ:PL    1/1:0,10:10:14.96:118,15,0
15    82620686    rs192290052    G    A    50.06    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.77;MQ0=1;MQRankSum=0.322;QD=5.56;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC139425.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438558    GT:AD:DP:GQ:PL    0/1:3,6:9:8.72:80,0,9
15    82634977    .    T    C    47.55    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.17;MQ0=3;MQRankSum=0.727;QD=6.79;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430944    GT:AD:DP:GQ:PL    0/1:4,3:7:21.42:78,0,21
15    82635023    .    CAAAT    C    189.74    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DP=12;FS=0.0;HRun=0;HaplotypeScore=66.7772;IndelType=D;MQ=26.51;MQ0=9;MQRankSum=-0.689;QD=9.04;ReadPosRankSum=1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430944    GT:AD:DP:GQ:PL    0/1:16,5:12:99:229,0,481
15    82635163    .    C    G    309.89    MQFilter40    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.418;DP=82;Dels=0.0;FS=2.908;HRun=1;HaplotypeScore=0.0;MQ=27.96;MQ0=36;MQRankSum=0.107;QD=3.78;ReadPosRankSum=-2.041;SNPEFF_AMINO_ACID_CHANGE=A469;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82633122_82635262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439287    GT:AD:DP:GQ:PL    0/1:61,20:82:99:340,0,717
15    82637069    .    C    G    83.53    MQFilter40    AC=2;AF=1.00;AN=2;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.51;MQ0=28;QD=2.69;SNPEFF_AMINO_ACID_CHANGE=R339T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82636945_82637157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430944    GT:AD:DP:GQ:PL    1/1:25,6:31:9.03:116,9,0
15    82638212    rs188883284    C    T    470.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=18.86;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430944    GT:AD:DP:GQ:PL    1/1:0,23:23:62.83:503,63,0
15    82808471    .    G    T    53.33    MQFilter40;QDFilter2    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=1.305;DP=53;Dels=0.0;FS=4.832;HRun=0;HaplotypeScore=0.0;MQ=13.99;MQ0=20;MQRankSum=-0.806;QD=1.01;ReadPosRankSum=-3.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP13-608F4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506975    GT:AD:DP:GQ:PL    0/1:37,16:53:83.32:83,0,295
15    82808611    .    G    A    34.02    MQFilter40;QDFilter2    AB=0.905;AC=1;AF=0.50;AN=2;BaseQRankSum=0.138;DP=190;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.429;MQ=10.33;MQ0=103;MQRankSum=1.227;QD=0.18;ReadPosRankSum=-2.486;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP13-608F4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506975    GT:AD:DP:GQ:PL    0/1:172,18:190:64.02:64,0,542
15    82934598    .    A    G    57.09    MQFilter40;QDFilter2    AB=0.976;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.429;DP=246;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7727;MQ=11.61;MQ0=134;MQRankSum=2.998;QD=0.23;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=C314R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:239,6:246:87.08:87,0,237
15    82934599    .    T    C    75.83    MQFilter40;QDFilter2    AB=0.858;AC=1;AF=0.50;AN=2;BaseQRankSum=1.719;DP=247;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7727;MQ=11.58;MQ0=135;MQRankSum=2.467;QD=0.31;ReadPosRankSum=-0.772;SNPEFF_AMINO_ACID_CHANGE=L313;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:212,35:247:99:106,0,217
15    82934619    .    A    G    145.91    MQFilter40;QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.478;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2005;MQ=11.45;MQ0=137;MQRankSum=0.398;QD=0.59;ReadPosRankSum=-3.864;SNPEFF_AMINO_ACID_CHANGE=C307R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:195,51:249:99:176,0,102
15    82934620    rs62012750    C    T    150.70    MQFilter40;QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.158;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2005;MQ=11.45;MQ0=137;MQRankSum=-0.479;QD=0.61;ReadPosRankSum=-2.81;SNPEFF_AMINO_ACID_CHANGE=L306;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:188,60:248:99:181,0,102
15    82934765    .    T    C    139.58    MQFilter40;QDFilter2    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=3.295;DP=250;DS;Dels=0.0;FS=12.334;HRun=0;HaplotypeScore=4.3594;MQ=17.89;MQ0=103;MQRankSum=-1.999;QD=0.56;ReadPosRankSum=0.784;SNPEFF_AMINO_ACID_CHANGE=H258R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:193,56:250:99:170,0,1865
15    82934786    .    T    C    520.88    MQFilter40    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.668;DP=250;DS;Dels=0.0;FS=4.716;HRun=0;HaplotypeScore=0.0;MQ=19.65;MQ0=87;MQRankSum=-2.818;QD=2.08;ReadPosRankSum=1.439;SNPEFF_AMINO_ACID_CHANGE=H251R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:175,74:250:99:551,0,1869
15    82934804    rs148567200    T    A    1012.85    HaplotypeScoreFilter13;MQFilter40    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.482;DB;DP=249;DS;Dels=0.0;FS=9.54;HRun=0;HaplotypeScore=44.7478;MQ=21.18;MQ0=78;MQRankSum=5.952;QD=4.07;ReadPosRankSum=1.967;SNPEFF_AMINO_ACID_CHANGE=E245V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:185,63:249:99:1043,0,1540
15    82934808    .    G    A    257.96    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=3.449;DP=248;DS;Dels=0.0;FS=0.95;HRun=0;HaplotypeScore=43.0191;MQ=21.52;MQ0=76;MQRankSum=-2.995;QD=1.04;ReadPosRankSum=0.386;SNPEFF_AMINO_ACID_CHANGE=R244C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:165,79:248:99:288,0,2246
15    82934828    .    C    T    798.46    MQFilter40    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DP=250;DS;Dels=0.0;FS=0.785;HRun=0;HaplotypeScore=0.9159;MQ=24.38;MQ0=51;MQRankSum=0.01;QD=3.19;ReadPosRankSum=-2.806;SNPEFF_AMINO_ACID_CHANGE=R237H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934266_82934859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:186,64:250:99:828,0,2343
15    82934936    rs4076899    A    C    454.88    MQFilter40    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.14;DB;DP=226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.93;MQ0=159;MQRankSum=5.114;QD=2.01;ReadPosRankSum=0.442;SNPEFF_AMINO_ACID_CHANGE=L215R;SNPEFF_CODON_CHANGE=cTa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_82934902_82935146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC126339.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426571    GT:AD:DP:GQ:PL    0/1:148,75:226:99:485,0,407
15    83013581    .    C    T    360.13    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.39;MQ0=58;MQRankSum=1.041;QD=4.62;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:33,45:78:39.05:393,39,0
15    83014106    .    T    C    462.73    MQFilter40    AC=2;AF=1.00;AN=2;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.18;MQ0=25;QD=10.76;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:21,22:43:45.12:496,45,0
15    83192822    .    T    G    105.58    MQFilter40    AC=2;AF=1.00;AN=2;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.49;MQ0=4;QD=8.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GOLGA6L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503347    GT:AD:DP:GQ:PL    1/1:1,11:12:15.01:138,15,0
15    83215251    rs1267657    T    C    3779.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.58;MQ0=0;QD=34.68;SNPEFF_AMINO_ACID_CHANGE=L279;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_83215191_83215271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398592    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3780,280,0
15    83224696    rs1145171    C    T    1824.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3617;MQ=58.66;MQ0=0;QD=35.08;SNPEFF_AMINO_ACID_CHANGE=P186;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_83224620_83224872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398591    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1857,138,0
15    83240293    rs783544    A    C    1292.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPEB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261723    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1325,99,0
15    83346018    rs3217364    TC    T    746.27    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=55;FS=6.118;HRun=3;HaplotypeScore=237.5021;IndelType=D;MQ=59.45;MQ0=0;MQRankSum=1.802;QD=13.57;ReadPosRankSum=0.757;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535385    GT:AD:DP:GQ:PL    0/1:27,28:55:99:785,0,769
15    83428192    rs1108134    C    T    1120.72    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.514;DB;DP=75;Dels=0.0;FS=6.282;HRun=2;HaplotypeScore=0.734;MQ=59.44;MQ0=0;MQRankSum=1.519;QD=14.94;ReadPosRankSum=0.892;SNPEFF_AMINO_ACID_CHANGE=E675K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_83428026_83428352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541889    GT:AD:DP:GQ:PL    0/1:38,37:75:99:1151,0,1103
15    83428193    rs1108135    G    A    1091.67    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.725;DB;DP=75;Dels=0.0;FS=4.565;HRun=0;HaplotypeScore=0.734;MQ=59.44;MQ0=0;MQRankSum=0.411;QD=14.56;ReadPosRankSum=-1.18;SNPEFF_AMINO_ACID_CHANGE=H674;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_83428026_83428352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541889    GT:AD:DP:GQ:PL    0/1:36,39:75:99:1122,0,1159
15    83433778    rs8036185    A    G    91.50    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=18.3;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334574    GT:AD:DP:GQ:PL    0/1:1,4:5:26.72:121,0,27
15    83440621    rs113012183    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334574    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    83452049    rs6422425    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334574    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
15    83455137    rs11259947    A    G    123.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=14;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.839;QD=8.82;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334574    GT:AD:DP:GQ:PL    0/1:8,6:14:99:154,0,258
15    83455423    rs62011702    G    A    2221.48    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=6.231;DB;DP=141;Dels=0.0;FS=3.154;HRun=0;HaplotypeScore=3.5333;MQ=59.67;MQ0=0;MQRankSum=0.659;QD=15.76;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334574    GT:AD:DP:GQ:PL    0/1:71,70:141:99:2251,0,2133
15    83485804    rs12903411    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.52;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHAMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234505    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
15    83499250    rs77885195    C    T    1256.45    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.439;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.84;MQ0=0;MQRankSum=-0.376;QD=22.04;ReadPosRankSum=0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WHAMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234505    GT:AD:DP:GQ:PL    0/1:20,37:57:99:1286,0,674
15    83521036    rs1256429    C    T    2189.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.306;DB;DP=67;Dels=0.0;FS=5.576;HRun=0;HaplotypeScore=2.5222;MQ=59.1;MQ0=0;MQRankSum=1.572;QD=32.69;ReadPosRankSum=-0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304231    GT:AD:DP:GQ:PL    1/1:1,65:67:99:2223,130,0
15    83528056    rs112463543    G    GT    690.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=10;HaplotypeScore=87.3857;IndelType=I;MQ=60.49;MQ0=0;QD=22.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304231    GT:AD:DP:GQ:PL    1/1:8,23:31:69.17:733,69,0
15    83543848    rs1256453    C    A    203.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.959;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.457;QD=9.69;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304231    GT:AD:DP:GQ:PL    0/1:12,9:21:99:233,0,442
15    83561295    rs7169401    G    A    638.07    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=4.856;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.624;QD=18.23;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304231    GT:AD:DP:GQ:PL    0/1:16,19:35:99:668,0,378
15    83680287    rs4842860    A    G    428.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.77;SNPEFF_AMINO_ACID_CHANGE=C25R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_83680249_83680393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C15orf40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451195    GT:AD:DP:GQ:PL    1/1:1,15:16:36.11:461,36,0
15    83680319    rs79927613    G    A    168.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=14.04;ReadPosRankSum=0.467;SNPEFF_AMINO_ACID_CHANGE=T14I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_83680249_83680393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C15orf40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451195    GT:AD:DP:GQ:PL    0/1:6,6:12:99:198,0,204
15    83680329    rs17361375    G    A    156.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=13.07;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=L11F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_83680249_83680393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C15orf40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451195    GT:AD:DP:GQ:PL    0/1:6,6:12:99:187,0,165
15    83719057    rs12437558    C    G    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261721    GT:AD:DP:GQ:PL    0/1:2,2:4:59.97:71,0,60
15    83725076    rs183370286    T    C    219.78    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.135;QD=18.31;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261721    GT:AD:DP:GQ:PL    0/1:5,7:12:99:250,0,153
15    83781474    rs1075619    T    C    279.79    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.249;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=13.32;ReadPosRankSum=0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258909    GT:AD:DP:GQ:PL    0/1:12,9:21:99:310,0,392
15    83793622    rs17507693    A    T    238.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9998;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=11.94;ReadPosRankSum=0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258909    GT:AD:DP:GQ:PL    0/1:12,8:20:99:269,0,367
15    83808103    rs8043224    T    C    901.32    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.885;DB;DP=62;Dels=0.0;FS=1.719;HRun=2;HaplotypeScore=0.9999;MQ=58.52;MQ0=0;MQRankSum=-0.237;QD=14.54;ReadPosRankSum=-0.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258909    GT:AD:DP:GQ:PL    0/1:29,33:62:99:931,0,908
15    83832698    rs12440562    T    G    349.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=24;Dels=0.0;FS=3.203;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.26;QD=14.55;ReadPosRankSum=0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC024270.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299633    GT:AD:DP:GQ:PL    0/1:12,12:24:99:379,0,409
15    84255758    rs17158793    T    C    144.16    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=0.9332;MQ=58.05;MQ0=0;MQRankSum=-1.134;QD=12.01;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=A216;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84255735_84255838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3GL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427482    GT:AD:DP:GQ:PL    0/1:5,7:12:99:174,0,141
15    84324441    rs2730080    G    A    92.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.24;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:5,4:9:99:122,0,178
15    84373319    rs3079595    C    CAG    3025.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=133.0087;IndelType=I;MQ=62.45;MQ0=0;QD=58.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    1/1:1,49:52:99:3068,157,0
15    84373370    rs890309    G    A    72.56    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=61.78;MQ0=0;MQRankSum=0.584;QD=4.03;ReadPosRankSum=0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:14,4:18:99:103,0,528
15    84473531    rs7179507    G    A    207.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=29.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:240,18,0
15    84488529    rs4583200    T    C    630.98    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=2.43;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=58.2;MQ0=0;MQRankSum=-2.318;QD=16.18;ReadPosRankSum=0.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:19,20:39:99:661,0,520
15    84488636    rs4483821    A    G    458.43    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.176;DB;DP=30;Dels=0.0;FS=1.419;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.544;QD=15.28;ReadPosRankSum=-1.339;SNPEFF_AMINO_ACID_CHANGE=H146R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84488563_84488799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:13,17:30:99:488,0,445
15    84539619    rs4144691    C    G    2795.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.95;SNPEFF_AMINO_ACID_CHANGE=L290V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84539554_84539711;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2829,205,0
15    84554018    rs8028931    G    C    176.50    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=25.21;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:1,6:7:20.16:206,0,20
15    84566444    rs7162129    T    C    130.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
15    84566544    rs11259927    C    T    302.60    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.061;QD=25.22;ReadPosRankSum=-1.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:2,10:12:52.85:333,0,53
15    84568504    rs6603004    A    G    804.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    1/1:0,26:26:63.20:838,63,0
15    84581889    rs12439867    G    A    577.88    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=50;Dels=0.0;FS=5.9;HRun=0;HaplotypeScore=0.8667;MQ=59.54;MQ0=0;MQRankSum=0.903;QD=11.56;ReadPosRankSum=0.476;SNPEFF_AMINO_ACID_CHANGE=P582;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84581844_84582130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:26,24:50:99:608,0,803
15    84581904    rs4842923    T    C    1316.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.5;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=R587;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84581844_84582130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1350,108,0
15    84582124    rs4842838    G    T    662.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=V661L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84581844_84582130;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    1/1:0,21:21:54.12:696,54,0
15    84611630    rs12901723    G    A    601.65    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=1.669;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.14;MQ0=0;MQRankSum=0.063;QD=18.8;ReadPosRankSum=0.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:11,21:32:99:632,0,288
15    84651185    rs8031704    C    A    984.32    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=79;Dels=0.0;FS=6.308;HRun=0;HaplotypeScore=1.9998;MQ=59.12;MQ0=0;MQRankSum=0.623;QD=12.46;ReadPosRankSum=0.693;SNPEFF_AMINO_ACID_CHANGE=P935;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84651025_84652096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:44,35:79:99:1014,0,1371
15    84651290    rs7176737    T    C    2103.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.74;MQ0=0;MQRankSum=-1.347;QD=28.82;ReadPosRankSum=1.347;SNPEFF_AMINO_ACID_CHANGE=H970;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84651025_84652096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2137,157,0
15    84657643    rs11629550    T    A    115.82    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.072;QD=11.58;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:4,6:10:99:146,0,140
15    84706461    rs950169    C    T    1176.52    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=78;Dels=0.0;FS=6.345;HRun=0;HaplotypeScore=0.734;MQ=59.17;MQ0=0;MQRankSum=0.472;QD=15.08;ReadPosRankSum=1.048;SNPEFF_AMINO_ACID_CHANGE=T1660I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84706452_84708594;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286744    GT:AD:DP:GQ:PL    0/1:33,45:78:99:1207,0,923
15    84722233    rs114637845    C    T    593.43    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.74;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.824;QD=19.14;ReadPosRankSum=-0.444;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,21:31:99:623,0,325
15    84722521    rs1818950    A    G    565.93    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=43;Dels=0.0;FS=8.338;HRun=0;HaplotypeScore=0.6651;MQ=58.69;MQ0=0;MQRankSum=0.77;QD=13.16;ReadPosRankSum=1.357;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,19:43:99:596,0,877
15    84749820    rs139071720    TTTA    T    319.81    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=4.29;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=136.2534;IndelType=D;MQ=58.88;MQ0=0;MQRankSum=-0.529;QD=8.42;ReadPosRankSum=0.42;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,11:37:99:359,0,1479
15    84753177    rs12437525    A    G    413.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:446,33,0
15    84758840    rs1567086    A    G    107.16    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.244;QD=8.93;ReadPosRankSum=2.141;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,5:12:99:137,0,229
15    84858672    rs7403404    A    G    1018.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=27.75;MQ0=2;QD=18.19;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,56:56:93.24:1052,93,0
15    84858679    rs11633897    C    T    326.85    MQFilter40    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.371;DB;DP=58;Dels=0.0;FS=3.185;HRun=1;HaplotypeScore=0.8941;MQ=28.77;MQ0=2;MQRankSum=-0.277;QD=5.64;ReadPosRankSum=2.527;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:38,20:58:99:357,0,622
15    84859270    .    C    T    105.94    MQFilter40;QDFilter2    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.049;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=11.28;MQ0=52;MQRankSum=0.659;QD=1.08;ReadPosRankSum=0.903;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:69,27:97:99:136,0,453
15    84908899    rs78949916    C    T    32.74    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.581;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=4.88;MQ0=118;MQRankSum=1.485;QD=0.25;ReadPosRankSum=-1.485;SNPEFF_AMINO_ACID_CHANGE=R265C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84908540_84909534;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOLGA6L4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000510439    GT:AD:DP:GQ:PL    1/1:106,25:132:6.01:64,6,0
15    84917194    rs144561950    G    A    108.58    MQFilter40    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=17.92;MQ0=5;MQRankSum=0.895;QD=7.24;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,8:15:31.13:139,0,31
15    84944192    rs62028145    C    G    63.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.89;MQ0=0;MQRankSum=0.358;QD=12.63;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC136704.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459938    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:93,0,69
15    84944337    rs1134020    G    T    546.90    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.13;MQ0=0;MQRankSum=0.821;QD=17.64;ReadPosRankSum=1.181;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC136704.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459938    GT:AD:DP:GQ:PL    0/1:13,18:31:99:577,0,445
15    84945185    rs3860265    C    T    1345.23    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.939;DB;DP=100;Dels=0.0;FS=2.675;HRun=0;HaplotypeScore=6.5098;MQ=53.64;MQ0=0;MQRankSum=0.795;QD=13.45;ReadPosRankSum=-0.879;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC136704.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408320    GT:AD:DP:GQ:PL    0/1:52,47:100:99:1375,0,1581
15    84945257    rs141855466    C    T    1110.30    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.974;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=51.56;MQ0=0;MQRankSum=-0.068;QD=13.22;ReadPosRankSum=0.461;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC136704.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408320    GT:AD:DP:GQ:PL    0/1:44,40:84:99:1140,0,1407
15    84945512    rs2401432    C    T    877.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.22;DB;DP=92;Dels=0.0;FS=2.394;HRun=1;HaplotypeScore=2.8305;MQ=53.29;MQ0=0;MQRankSum=0.078;QD=9.54;ReadPosRankSum=0.729;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC136704.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408320    GT:AD:DP:GQ:PL    0/1:54,36:92:99:907,0,1768
15    84949363    rs11637672    C    T    30.62    MQFilter40;QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.11;MQ0=8;MQRankSum=1.881;QD=1.8;ReadPosRankSum=-1.881;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:13,4:17:60.61:61,0,102
15    84949664    rs11632988    A    G    1120.92    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=81;Dels=0.0;FS=4.425;HRun=2;HaplotypeScore=1.9786;MQ=53.99;MQ0=0;MQRankSum=0.999;QD=13.84;ReadPosRankSum=0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:36,45:81:99:1151,0,1126
15    84949825    rs2257335    G    A    341.27    MQFilter40    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=72;Dels=0.0;FS=6.604;HRun=0;HaplotypeScore=1.7323;MQ=34.53;MQ0=0;MQRankSum=-2.627;QD=4.74;ReadPosRankSum=-0.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:51,21:72:99:371,0,1167
15    84949834    rs2563917    G    A    1681.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7256;MQ=33.88;MQ0=0;QD=25.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1715,147,0
15    84949839    rs140404279    T    C    383.79    MQFilter40    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.974;DB;DP=73;Dels=0.0;FS=17.253;HRun=1;HaplotypeScore=0.0;MQ=33.08;MQ0=3;MQRankSum=-1.871;QD=5.26;ReadPosRankSum=-0.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:53,20:73:99:414,0,1145
15    84949847    rs149704851    A    G    327.15    MQFilter40    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=69;Dels=0.0;FS=15.181;HRun=0;HaplotypeScore=0.8941;MQ=31.91;MQ0=5;MQRankSum=-1.255;QD=4.74;ReadPosRankSum=0.297;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:51,18:69:99:357,0,1086
15    84949951    .    C    G    409.82    MQFilter40    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.539;DP=116;Dels=0.0;FS=9.625;HRun=0;HaplotypeScore=0.0;MQ=18.53;MQ0=62;MQRankSum=-0.637;QD=3.53;ReadPosRankSum=-0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:71,45:116:99:440,0,569
15    84949964    .    G    A    221.53    MQFilter40;QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=1.399;DP=125;Dels=0.0;FS=7.768;HRun=3;HaplotypeScore=0.9916;MQ=18.04;MQ0=70;MQRankSum=2.136;QD=1.77;ReadPosRankSum=0.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:107,18:125:99:252,0,924
15    84950081    rs189555017    G    A    643.91    MQFilter40    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.397;DB;DP=102;Dels=0.0;FS=3.452;HRun=0;HaplotypeScore=3.0042;MQ=38.01;MQ0=8;MQRankSum=-0.153;QD=6.31;ReadPosRankSum=2.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:71,30:102:99:674,0,1965
15    84950110    rs62029582    G    C    379.79    MQFilter40    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.507;DB;DP=73;Dels=0.0;FS=9.558;HRun=2;HaplotypeScore=0.8321;MQ=37.34;MQ0=6;MQRankSum=0.0;QD=5.2;ReadPosRankSum=-1.671;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:51,22:73:99:410,0,1499
15    84950209    rs10152249    T    C    1012.47    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.087;DB;DP=47;Dels=0.0;FS=7.014;HRun=0;HaplotypeScore=1.8319;MQ=37.87;MQ0=9;MQRankSum=1.259;QD=21.54;ReadPosRankSum=0.744;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    1/1:9,38:47:26.53:1045,27,0
15    84950295    rs9329365    G    T    1548.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.29;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1581,123,0
15    84950369    rs67119537    T    C    247.55    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.204;DB;DP=38;Dels=0.0;FS=12.329;HRun=6;HaplotypeScore=0.8667;MQ=57.07;MQ0=0;MQRankSum=-0.763;QD=6.51;ReadPosRankSum=-2.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:21,17:38:99:278,0,654
15    84958078    rs8034390    C    T    298.65    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=14;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.667;QD=21.33;ReadPosRankSum=1.867;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:5,9:14:99:329,0,162
15    84958278    rs8035359    A    G    2106.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.4;MQ0=1;QD=30.98;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2140,162,0
15    84958318    rs12910334    G    A    1065.61    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.27;MQ0=1;MQRankSum=-4.399;QD=11.58;ReadPosRankSum=1.709;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:50,42:92:99:1096,0,1553
15    84958359    rs142959789    G    A    799.97    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.157;DB;DP=91;Dels=0.0;FS=1.82;HRun=0;HaplotypeScore=2.5787;MQ=51.0;MQ0=1;MQRankSum=-2.769;QD=8.79;ReadPosRankSum=0.702;SNPEFF_AMINO_ACID_CHANGE=S433;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84957768_84960865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:59,32:91:99:830,0,1840
15    84958367    rs468120    C    T    692.77    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=2.058;DB;DP=92;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=2.6075;MQ=50.74;MQ0=1;MQRankSum=-2.7;QD=7.53;ReadPosRankSum=-1.057;SNPEFF_AMINO_ACID_CHANGE=V431I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84957768_84960865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:61,31:92:99:723,0,1791
15    84958495    .    G    A    1123.82    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.854;DP=126;Dels=0.0;FS=7.735;HRun=0;HaplotypeScore=0.0;MQ=26.74;MQ0=76;MQRankSum=3.496;QD=8.92;ReadPosRankSum=-0.609;SNPEFF_AMINO_ACID_CHANGE=P388L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84957768_84960865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    0/1:75,51:126:73.61:1154,0,74
15    84958618    rs113469675    G    A    431.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.61;MQ0=99;QD=3.82;SNPEFF_AMINO_ACID_CHANGE=T347M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_84957768_84960865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSPG4P5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456932    GT:AD:DP:GQ:PL    1/1:78,35:113:42.08:464,42,0
15    85053124    rs192508624    G    T    460.77    MQFilter40    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=1.083;DB;DP=31;Dels=0.0;FS=0.0;HRun=12;HaplotypeScore=0.0;MQ=38.94;MQ0=5;MQRankSum=-0.028;QD=14.86;ReadPosRankSum=-0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515341    GT:AD:DP:GQ:PL    0/1:12,19:31:99:491,0,202
15    85053142    rs184555335    C    T    657.93    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6647;MQ=36.13;MQ0=10;MQRankSum=-0.829;QD=18.28;ReadPosRankSum=-0.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515341    GT:AD:DP:GQ:PL    1/1:12,24:36:21.61:691,22,0
15    85053188    .    C    G    43.67    MQFilter40;QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=27.5;MQ0=16;MQRankSum=-0.303;QD=1.32;ReadPosRankSum=0.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414190    GT:AD:DP:GQ:PL    0/1:27,6:33:73.67:74,0,370
15    85053219    .    C    T    189.97    MQFilter40    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.67;MQ0=38;MQRankSum=-1.835;QD=3.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414190    GT:AD:DP:GQ:PL    0/1:42,8:50:98.20:220,0,98
15    85055547    .    C    T    67.58    MQFilter40;QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.771;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8317;MQ=11.67;MQ0=72;MQRankSum=0.07;QD=0.27;ReadPosRankSum=0.418;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414190    GT:AD:DP:GQ:PL    0/1:189,61:250:97.57:98,0,383
15    85055683    .    C    T    254.86    MQFilter40;QDFilter2    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DP=242;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8534;MQ=14.7;MQ0=114;MQRankSum=-0.418;QD=1.05;ReadPosRankSum=-1.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414190    GT:AD:DP:GQ:PL    0/1:162,80:242:99:285,0,1088
15    85055706    rs62637746    T    C    1312.54    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.333;DB;DP=237;DS;Dels=0.0;FS=25.433;HRun=0;HaplotypeScore=3.6417;MQ=22.92;MQ0=92;MQRankSum=1.396;QD=5.54;ReadPosRankSum=-0.469;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414190    GT:AD:DP:GQ:PL    0/1:141,96:237:99:1343,0,1142
15    85055769    rs1727705    C    T    265.95    MQFilter40;QDFilter2    AB=0.887;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.446;DB;DP=250;DS;Dels=0.0;FS=0.97;HRun=0;HaplotypeScore=6.8656;MQ=34.36;MQ0=44;MQRankSum=0.113;QD=1.06;ReadPosRankSum=-2.688;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414190    GT:AD:DP:GQ:PL    0/1:220,28:250:99:296,0,4354
15    85055802    rs1727704    C    A    1055.27    HaplotypeScoreFilter13;MQFilter40    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.095;DB;DP=250;DS;Dels=0.0;FS=5.796;HRun=0;HaplotypeScore=34.8637;MQ=34.56;MQ0=11;MQRankSum=-3.325;QD=4.22;ReadPosRankSum=0.564;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414190    GT:AD:DP:GQ:PL    0/1:186,64:250:99:1085,0,4518
15    85055872    rs62029638    C    T    1240.39    MQFilter40    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.606;DB;DP=248;DS;Dels=0.0;FS=1.206;HRun=0;HaplotypeScore=0.9867;MQ=28.79;MQ0=11;MQRankSum=-0.918;QD=5.0;ReadPosRankSum=0.563;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414190    GT:AD:DP:GQ:PL    0/1:167,81:248:99:1270,0,3161
15    85081832    rs150964    A    G    1205.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=28.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339094    GT:AD:DP:GQ:PL    1/1:0,43:43:96.27:1238,96,0
15    85112536    rs34395289    T    G    35.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.72;MQ0=0;MQRankSum=0.736;QD=11.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC048382.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339094    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:66,0,31
15    85149771    rs2271433    G    T    777.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_AMINO_ACID_CHANGE=V140F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85149760_85150120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334141    GT:AD:DP:GQ:PL    1/1:0,25:25:60.20:811,60,0
15    85159397    rs10083683    C    G    282.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327179    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:315,24,0
15    85163605    rs2036949    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379358    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    85163998    rs2044502    G    C    2315.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=S172T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85163833_85166947;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379353    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2348,184,0
15    85175102    rs2121452    G    A    1489.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303310    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1522,114,0
15    85177208    rs698620    G    A    215.04    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.15;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=14.34;ReadPosRankSum=-0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-182J1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530891    GT:AD:DP:GQ:PL    0/1:7,8:15:99:245,0,170
15    85177723    rs36126054    T    G    949.57    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=68;Dels=0.0;FS=4.886;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.061;QD=13.96;ReadPosRankSum=-1.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-182J1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530891    GT:AD:DP:GQ:PL    0/1:35,33:68:99:980,0,1131
15    85186577    rs7237    C    T    205.65    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.0;MQ0=0;MQRankSum=0.386;QD=14.69;ReadPosRankSum=0.386;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398528    GT:AD:DP:GQ:PL    0/1:6,8:14:99:236,0,206
15    85186637    rs510875    G    C    658.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=38.75;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398528    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:692,51,0
15    85187103    rs75840938    C    T    134.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.248;QD=14.96;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398528    GT:AD:DP:GQ:PL    0/1:3,6:9:91.12:165,0,91
15    85188994    rs2271432    T    C    1621.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=29.49;SNPEFF_AMINO_ACID_CHANGE=S197;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85188702_85189067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR73;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434634    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1655,129,0
15    85189464    rs2271431    T    G    638.87    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.258;DB;DP=45;Dels=0.0;FS=4.875;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=14.2;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=R156;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85189415_85189579;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR73;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434634    GT:AD:DP:GQ:PL    0/1:23,21:45:99:669,0,774
15    85191274    rs7169629    C    G    412.11    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.651;QD=17.92;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398528    GT:AD:DP:GQ:PL    0/1:10,13:23:99:442,0,326
15    85197283    rs75697182    G    C    71.94    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=8.99;ReadPosRankSum=1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360476    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,127
15    85198362    rs1107179    G    T    332.82    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=0.137;QD=13.31;ReadPosRankSum=0.082;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398528    GT:AD:DP:GQ:PL    0/1:14,11:25:99:363,0,479
15    85259053    rs6496355    C    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268220    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
15    85333953    rs2241645    A    G    2506.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=Q746;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85333936_85334114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF592;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299927    GT:AD:DP:GQ:PL    1/1:0,76:77:99:2540,193,0
15    85334332    rs2241644    G    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF592;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299927    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
15    85360101    rs11857356    T    C    128.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.35;SNPEFF_AMINO_ACID_CHANGE=Y8;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85359911_85360826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:161,15,0
15    85370597    rs891286    C    G    534.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:568,42,0
15    85382193    rs1896864    C    A    293.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:327,24,0
15    85383145    rs3803403    C    G    191.95    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.557;DB;DP=22;Dels=0.0;FS=5.898;HRun=0;HaplotypeScore=2.5873;MQ=58.95;MQ0=0;MQRankSum=-1.412;QD=8.73;ReadPosRankSum=-0.616;SNPEFF_AMINO_ACID_CHANGE=T414S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85382933_85384163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    0/1:13,8:22:99:222,0,451
15    85383640    rs3803405    G    A    464.62    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.175;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=2.277;QD=16.59;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=G579E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85382933_85384163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    0/1:10,18:28:99:495,0,331
15    85383839    rs3803406    G    A    870.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_AMINO_ACID_CHANGE=G645;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85382933_85384163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:903,69,0
15    85399542    rs80014104    C    T    556.87    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.62;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8665;MQ=60.0;MQ0=0;MQRankSum=0.304;QD=12.95;ReadPosRankSum=0.911;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    0/1:22,21:43:99:587,0,716
15    85401259    rs306197    C    T    89.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=9.95;ReadPosRankSum=0.729;SNPEFF_AMINO_ACID_CHANGE=P1299L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85399623_85401786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    0/1:4,5:9:96.48:119,0,96
15    85401419    rs167379    T    C    305.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_AMINO_ACID_CHANGE=G1352;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85399623_85401786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:338,24,0
15    85401861    rs75389719    G    A    143.83    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=15.98;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,136
15    85405995    rs187316    T    C    386.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.217;DB;DP=35;Dels=0.0;FS=13.359;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.383;QD=11.05;ReadPosRankSum=0.283;SNPEFF_AMINO_ACID_CHANGE=L1622P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85405866_85406146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    0/1:20,15:35:99:417,0,658
15    85407564    rs2289138    A    C    249.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258888    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
15    85430838    rs3743161    G    T    73.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.64;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:103,0,66
15    85430969    rs3743162    C    T    328.12    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.967;QD=11.72;ReadPosRankSum=1.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:15,13:28:99:358,0,510
15    85431144    rs12442557    G    A    237.62    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.746;DB;DP=22;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.604;QD=10.8;ReadPosRankSum=-0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:13,9:22:99:268,0,436
15    85438117    rs61602610    G    A    70.26    PASS    AB=0.033;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=30;Dels=0.0;FS=7.634;HRun=0;HaplotypeScore=0.8321;MQ=57.5;MQ0=0;MQRankSum=-0.538;QD=2.34;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:1,29:30:27.64:100,0,28
15    85438311    rs75301511    C    CTTG    1277.34    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.271;DB;DP=47;FS=13.887;HRun=0;HaplotypeScore=168.3457;IndelType=I;MQ=56.44;MQ0=0;MQRankSum=-0.243;QD=27.18;ReadPosRankSum=0.816;SNPEFF_AMINO_ACID_CHANGE=L140LV;SNPEFF_CODON_CHANGE=ctc/cTTGtc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_15_85438171_85438354;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:28,19:47:99:1316,0,1110
15    85447220    rs1545470    C    T    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:71,0,34
15    85447431    rs2290272    G    A    613.46    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.921;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-1.573;QD=12.78;ReadPosRankSum=1.016;SNPEFF_AMINO_ACID_CHANGE=V111I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85447328_85447469;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537703    GT:AD:DP:GQ:PL    0/1:26,22:48:99:643,0,713
15    85447635    rs2290271    A    C    57.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.001;QD=6.39;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:6,3:9:87.49:87,0,199
15    85449043    rs11073794    A    G    110.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:143,12,0
15    85449072    rs4247408    T    C    32.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:64,6,0
15    85461898    rs1562885    G    C    158.46    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.992;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=8.34;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:11,8:19:99:188,0,396
15    85461971    rs1562884    G    A    224.53    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=20.41;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:4,7:11:88.27:255,0,88
15    85467207    rs3825875    T    C    437.40    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.79;QD=18.23;ReadPosRankSum=-0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:10,14:24:99:467,0,303
15    85476222    rs3217613    GTAT    G    229.22    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=59.886;IndelType=D;MQ=59.92;MQ0=0;MQRankSum=1.059;QD=14.33;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:9,7:16:99:268,0,521
15    85476441    rs2305367    G    A    1264.45    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.573;DB;DP=79;Dels=0.0;FS=1.186;HRun=2;HaplotypeScore=4.908;MQ=59.12;MQ0=0;MQRankSum=0.691;QD=16.01;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=K383;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85476376_85476506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:35,44:79:99:1294,0,1061
15    85478038    rs7173463    T    C    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:66,6,0
15    85478153    rs7163966    G    T    632.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:666,48,0
15    85478410    rs2242048    A    G    1031.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=Q456;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85478257_85478425;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    1/1:0,32:33:84.24:1065,84,0
15    85478729    rs2242046    G    A    443.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=38;Dels=0.0;FS=1.463;HRun=1;HaplotypeScore=0.5784;MQ=59.51;MQ0=0;MQRankSum=0.409;QD=11.66;ReadPosRankSum=0.584;SNPEFF_AMINO_ACID_CHANGE=D521N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85478552_85478749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:19,19:38:99:473,0,515
15    85487960    rs35102918    GC    G    1180.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=4;HaplotypeScore=106.2467;IndelType=D;MQ=61.49;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    1/1:1,35:36:99:1223,102,0
15    85488128    rs2305366    G    A    127.69    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.551;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.564;QD=5.8;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:15,7:22:99:158,0,526
15    85488298    rs62021453    G    A    266.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=28;Dels=0.0;FS=7.273;HRun=0;HaplotypeScore=0.7887;MQ=59.17;MQ0=0;MQRankSum=1.012;QD=9.51;ReadPosRankSum=-0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286749    GT:AD:DP:GQ:PL    0/1:16,12:28:99:296,0,572
15    85488572    rs8025045    T    G    90.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC28A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538177    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:123,9,0
15    85619248    rs11631548    C    T    1671.24    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.972;DB;DP=123;Dels=0.0;FS=4.584;HRun=0;HaplotypeScore=3.1943;MQ=59.66;MQ0=0;MQRankSum=0.489;QD=13.59;ReadPosRankSum=-0.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    0/1:64,59:123:99:1701,0,2027
15    85632381    rs744422    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
15    85634551    rs28401313    T    C    116.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=1.38;QD=19.45;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    0/1:2,4:6:61.16:147,0,61
15    85640983    rs2304418    T    C    74.17    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.54;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:104,0,27
15    85656568    rs2304422    A    G    1619.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.055;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.979;QD=35.2;ReadPosRankSum=-0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    1/1:1,45:46:93.10:1652,93,0
15    85657062    rs66934208    T    C    152.05    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=8.45;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    0/1:11,7:18:99:182,0,391
15    85657120    rs62019510    A    G    598.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.761;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9729;MQ=59.45;MQ0=0;MQRankSum=1.509;QD=14.24;ReadPosRankSum=0.478;SNPEFF_AMINO_ACID_CHANGE=N355S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_85657104_85657268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339708    GT:AD:DP:GQ:PL    0/1:21,21:42:99:628,0,642
15    85659027    rs4842867    C    T    37.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:68,0,26
15    85659150    rs71466073    C    CAA    789.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.347;DB;DP=43;FS=0.0;HRun=16;HaplotypeScore=322.7123;IndelType=I;MQ=53.99;MQ0=0;MQRankSum=0.347;QD=18.36;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    1/1:10,18:43:76.56:831,77,0
15    85659479    rs11073951    A    G    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:125,9,0
15    85660716    rs994989    G    C    212.35    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=23.59;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    0/1:2,7:9:55.91:242,0,56
15    85661270    rs11073952    T    C    31.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.39;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    0/1:3,2:5:61.96:62,0,108
15    85679984    rs11073962    G    A    229.98    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.666;QD=23.0;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310298    GT:AD:DP:GQ:PL    0/1:2,8:10:58.20:260,0,58
15    85739148    rs56189605    T    C    606.10    MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.986;DB;DP=64;Dels=0.0;FS=1.181;HRun=1;HaplotypeScore=0.9665;MQ=37.57;MQ0=0;MQRankSum=0.468;QD=9.47;ReadPosRankSum=0.524;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,27:64:99:636,0,1001
15    85739209    .    G    A    264.91    MQFilter40    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=0.191;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.33;MQ0=13;MQRankSum=-0.91;QD=6.16;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:28,15:43:99:295,0,499
15    85787698    .    A    G    45.23    MQFilter40;QDFilter2    AB=0.885;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.964;DP=130;Dels=0.0;FS=8.741;HRun=1;HaplotypeScore=1.7333;MQ=13.7;MQ0=81;MQRankSum=-0.285;QD=0.35;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426424    GT:AD:DP:GQ:PL    0/1:115,15:130:75.22:75,0,734
15    85787959    rs62020899    G    T    1462.33    MQFilter40    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.213;DB;DP=242;DS;Dels=0.0;FS=0.652;HRun=0;HaplotypeScore=8.6462;MQ=33.39;MQ0=31;MQRankSum=3.117;QD=6.04;ReadPosRankSum=3.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426424    GT:AD:DP:GQ:PL    0/1:170,72:242:99:1492,0,2934
15    85788160    .    G    A    239.60    MQFilter40;QDFilter2    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.372;DP=244;DS;Dels=0.0;FS=9.748;HRun=0;HaplotypeScore=0.7887;MQ=9.81;MQ0=164;MQRankSum=3.317;QD=0.98;ReadPosRankSum=-0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426424    GT:AD:DP:GQ:PL    0/1:208,34:244:99:270,0,370
15    85788161    .    T    C    232    MQFilter40;QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.161;DP=241;DS;Dels=0.0;FS=12.798;HRun=0;HaplotypeScore=0.7887;MQ=9.87;MQ0=161;MQRankSum=3.25;QD=0.96;ReadPosRankSum=-0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426424    GT:AD:DP:GQ:PL    0/1:209,31:241:99:262,0,375
15    85788181    .    A    G    39.48    MQFilter40;QDFilter2    AB=0.95;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DP=239;DS;Dels=0.0;FS=2.53;HRun=0;HaplotypeScore=3.9058;MQ=11.2;MQ0=162;MQRankSum=2.813;QD=0.17;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426424    GT:AD:DP:GQ:PL    0/1:227,12:239:69.48:69,0,752
15    85788182    .    C    T    137.97    MQFilter40;QDFilter2    AB=0.913;AC=1;AF=0.50;AN=2;BaseQRankSum=4.401;DP=240;DS;Dels=0.0;FS=5.359;HRun=0;HaplotypeScore=3.9058;MQ=11.02;MQ0=165;MQRankSum=2.666;QD=0.57;ReadPosRankSum=0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426424    GT:AD:DP:GQ:PL    0/1:219,21:240:99:168,0,611
15    85790519    .    A    G    38.63    MQFilter40;QDFilter2    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=24.68;MQ0=9;MQRankSum=-1.408;QD=1.61;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426424    GT:AD:DP:GQ:PL    0/1:15,9:24:68.62:69,0,306
15    85805243    rs58677120    T    C    31.37    MQFilter40;QDFilter2    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=17;Dels=0.0;FS=11.553;HRun=1;HaplotypeScore=0.0;MQ=39.23;MQ0=2;MQRankSum=-1.099;QD=1.85;ReadPosRankSum=0.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426424    GT:AD:DP:GQ:PL    0/1:12,5:17:61.36:61,0,285
15    86029097    rs11856869    C    G    169.31    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.98;MQ0=0;MQRankSum=-1.749;QD=15.39;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:5,6:11:99:199,0,175
15    86064870    rs143785838    TA    T    323.62    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.592;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=70.826;IndelType=D;MQ=60.57;MQ0=0;MQRankSum=-0.612;QD=17.03;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:9,10:19:99:363,0,375
15    86076749    rs62023885    T    G    265.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=20;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=13.27;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:10,10:20:99:295,0,300
15    86087212    rs7162720    C    T    681.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,23:23:57.16:715,57,0
15    86087309    rs2291049    T    C    36.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
15    86122654    rs2061821    T    C    1557.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_AMINO_ACID_CHANGE=M451T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1590,129,0
15    86122779    rs2061822    T    C    1366.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.58;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=W493R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1399,111,0
15    86122916    rs2061823    T    C    3068.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=59.29;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=A538;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3102,238,0
15    86123019    rs2061824    C    T    3710.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8136;MQ=59.77;MQ0=0;QD=36.38;SNPEFF_AMINO_ACID_CHANGE=R573C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3711,277,0
15    86123170    rs745191    G    T    733    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.383;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.22;MQ0=0;MQRankSum=1.18;QD=13.57;ReadPosRankSum=-1.162;SNPEFF_AMINO_ACID_CHANGE=G623V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    0/1:29,25:54:99:763,0,1050
15    86123364    rs7177107    G    A    970.03    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.504;QD=12.93;ReadPosRankSum=-0.811;SNPEFF_AMINO_ACID_CHANGE=E688K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    0/1:44,31:75:99:1000,0,1251
15    86123770    rs114705815    A    T    1572.99    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=4.478;DB;DP=129;Dels=0.0;FS=8.273;HRun=2;HaplotypeScore=3.5052;MQ=59.82;MQ0=0;MQRankSum=-0.925;QD=12.19;ReadPosRankSum=0.628;SNPEFF_AMINO_ACID_CHANGE=Y823F;SNPEFF_CODON_CHANGE=tAt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    0/1:71,58:129:99:1603,0,2209
15    86123833    rs4075256    T    C    3437.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3437;MQ=59.54;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=V844A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3437,259,0
15    86123924    rs4075255    C    T    2698.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.42;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=P874;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,78:79:99:2731,208,0
15    86123988    rs4075254    G    A    2729.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=59.73;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=V896M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2762,211,0
15    86124419    rs4843073    C    T    998.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_AMINO_ACID_CHANGE=S1039;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1031,75,0
15    86124483    rs4843074    C    G    1372.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.48;SNPEFF_AMINO_ACID_CHANGE=P1061A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1406,111,0
15    86124555    rs4843075    G    A    1685.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.86;SNPEFF_AMINO_ACID_CHANGE=D1085N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1718,126,0
15    86124824    rs115468498    G    A    469.86    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.353;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.048;QD=13.05;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=E1174;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    0/1:20,16:36:99:500,0,600
15    86124946    rs7162168    T    C    475.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_AMINO_ACID_CHANGE=M1215T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,17:17:42.09:508,42,0
15    86124968    rs11633087    G    A    618.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_AMINO_ACID_CHANGE=R1222;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:651,48,0
15    86125031    rs7178065    G    A    821.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_AMINO_ACID_CHANGE=G1243;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86122161_86125338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394516    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:855,66,0
15    86128717    rs10520595    C    T    77.25    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:107,0,28
15    86129201    rs931082    T    A    207.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:241,18,0
15    86182512    rs56092539    A    G    138.64    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.6;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:6,5:11:99:169,0,211
15    86189006    rs71468130    G    GTT    931.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.308;DB;DP=41;FS=0.0;HRun=12;HaplotypeScore=242.653;IndelType=I;MQ=56.68;MQ0=1;MQRankSum=-0.306;QD=22.19;ReadPosRankSum=0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:9,18:41:26.15:974,26,0
15    86199049    rs17635450    C    G    471.26    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.778;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.38;MQ0=0;MQRankSum=0.076;QD=12.74;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:18,19:37:99:501,0,564
15    86205850    rs338543    G    A    339.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:373,30,0
15    86207621    rs7163838    T    C    238.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=19.88;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:4,8:12:99:269,0,124
15    86213172    rs338523    A    G    52.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    86227952    rs2306225    A    G    400.27    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.423;DB;DP=45;Dels=0.0;FS=1.61;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.878;QD=8.89;ReadPosRankSum=-1.885;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:28,17:45:99:430,0,962
15    86235235    rs16943251    T    G    228.92    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.381;QD=17.61;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:5,8:13:99:259,0,172
15    86236291    rs75331605    C    G    59.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.55;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:4,3:7:89.84:90,0,142
15    86253768    rs8037947    T    A    912.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:945,72,0
15    86253911    rs8038249    T    G    1151.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.044;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=29.54;ReadPosRankSum=-0.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:1,38:39:51.54:1185,52,0
15    86265644    rs7179917    G    A    865.65    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=1.153;DB;DP=53;Dels=0.0;FS=3.121;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=16.33;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:24,29:53:99:896,0,784
15    86265663    rs7164373    T    A    693.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=45;Dels=0.0;FS=9.345;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.293;QD=15.42;ReadPosRankSum=0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:22,22:45:99:724,0,744
15    86265782    rs7182210    A    C    71.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.21;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:2,3:5:64.96:101,0,65
15    86278174    rs2241267    C    T    3997.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3997,304,0
15    86278309    rs2241268    G    A    1824.42    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=2.841;DB;DP=137;Dels=0.0;FS=11.887;HRun=0;HaplotypeScore=5.2353;MQ=59.86;MQ0=0;MQRankSum=-0.304;QD=13.32;ReadPosRankSum=0.493;SNPEFF_AMINO_ACID_CHANGE=G2436S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86278223_86278381;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458540    GT:AD:DP:GQ:PL    0/1:74,63:137:99:1854,0,1960
15    86278395    rs17638180    A    C    961.64    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.682;DB;DP=67;Dels=0.0;FS=4.181;HRun=0;HaplotypeScore=0.9967;MQ=59.03;MQ0=0;MQRankSum=0.033;QD=14.35;ReadPosRankSum=-1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:32,35:67:99:992,0,857
15    86278479    rs16943741    A    G    183.72    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=15.31;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:5,7:12:99:214,0,134
15    86278597    rs2241269    T    C    207.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
15    86284817    rs13511    T    C    170    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
15    86287724    rs11629690    G    A    524.96    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=4.668;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.81;MQ0=0;MQRankSum=0.939;QD=13.46;ReadPosRankSum=0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:21,17:39:99:555,0,627
15    86287910    rs11073517    C    T    1385.13    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.457;DB;DP=116;Dels=0.0;FS=2.944;HRun=0;HaplotypeScore=2.7883;MQ=59.39;MQ0=0;MQRankSum=0.095;QD=11.94;ReadPosRankSum=0.164;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361243    GT:AD:DP:GQ:PL    0/1:61,55:116:99:1415,0,1881
15    86311695    rs1978391    G    A    925.97    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=66;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.401;QD=14.03;ReadPosRankSum=0.611;SNPEFF_AMINO_ACID_CHANGE=F418;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86311248_86312849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538153    GT:AD:DP:GQ:PL    0/1:35,31:66:99:956,0,936
15    86312681    rs11073537    G    A    528.55    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.015;DB;DP=38;Dels=0.0;FS=1.279;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.102;QD=13.91;ReadPosRankSum=1.389;SNPEFF_AMINO_ACID_CHANGE=L121;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86311248_86313051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337975    GT:AD:DP:GQ:PL    0/1:18,20:38:99:559,0,594
15    86313048    rs2614657    T    C    318.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_86311248_86313051;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337975    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:352,27,0
15    86697596    rs7161846    G    C    1318.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.38;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421325    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1352,102,0
15    86702077    rs138607491    TA    T    200.04    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=4.287;DB;DP=32;FS=0.0;HRun=3;HaplotypeScore=110.8822;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.196;QD=6.25;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421325    GT:AD:DP:GQ:PL    0/1:23,9:32:99:239,0,850
15    86799873    rs1908787    A    T    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421325    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
15    86800041    rs72752192    G    C    932.28    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.805;DB;DP=52;Dels=0.0;FS=1.513;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.181;QD=17.93;ReadPosRankSum=1.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421325    GT:AD:DP:GQ:PL    0/1:22,30:52:99:962,0,692
15    86800209    rs1353578    C    T    942.41    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=3.445;DB;DP=74;Dels=0.0;FS=0.969;HRun=0;HaplotypeScore=0.9159;MQ=59.38;MQ0=0;MQRankSum=0.072;QD=12.74;ReadPosRankSum=-1.83;SNPEFF_AMINO_ACID_CHANGE=P241;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86800084_86800249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421325    GT:AD:DP:GQ:PL    0/1:39,35:74:99:972,0,1232
15    86806029    rs1566088    C    T    1735.02    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=118;Dels=0.0;FS=0.734;HRun=0;HaplotypeScore=2.9065;MQ=59.8;MQ0=0;MQRankSum=0.999;QD=14.7;ReadPosRankSum=-1.474;SNPEFF_AMINO_ACID_CHANGE=D15;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86806009_86806125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:60,57:118:99:1765,0,1709
15    86807761    rs10520618    A    G    1624.02    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.321;DB;DP=117;Dels=0.0;FS=10.243;HRun=0;HaplotypeScore=1.7608;MQ=59.18;MQ0=0;MQRankSum=0.453;QD=13.76;ReadPosRankSum=-0.564;SNPEFF_AMINO_ACID_CHANGE=E138;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86807489_86808069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:61,56:117:99:1654,0,2001
15    86808262    rs8029304    G    C    250.56    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.241;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.355;QD=15.66;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:7,9:16:99:281,0,204
15    86809807    rs8041327    C    T    98.20    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.05;MQ0=0;MQRankSum=0.135;QD=8.18;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:7,5:12:99:128,0,259
15    86814654    rs11852354    T    G    77.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.41;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:108,0,27
15    86814866    rs11858435    A    G    1196.36    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=2.487;DB;DP=100;Dels=0.0;FS=2.679;HRun=0;HaplotypeScore=4.3891;MQ=59.54;MQ0=0;MQRankSum=2.146;QD=11.96;ReadPosRankSum=-0.011;SNPEFF_AMINO_ACID_CHANGE=L353;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_86814850_86814937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:56,43:100:99:1226,0,1700
15    86838338    rs35186403    C    T    157.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=22.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:190,15,0
15    87066367    rs2346740    C    A    98.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.66;QD=7.57;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:6,7:13:99:128,0,205
15    87097468    rs9788743    T    C    92.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
15    87097892    rs10162993    C    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    87099537    rs752270    T    C    1120.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.38;MQ0=0;QD=30.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441037    GT:AD:DP:GQ:PL    1/1:0,37:37:87.28:1154,87,0
15    87217488    rs11853730    T    C    488.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.147;DB;DP=45;Dels=0.0;FS=2.683;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.846;QD=10.86;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:27,18:45:99:519,0,962
15    87217613    rs8028043    A    G    1067.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_AMINO_ACID_CHANGE=Q1010R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_87217504_87217667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421325    GT:AD:DP:GQ:PL    1/1:0,33:33:87.23:1100,87,0
15    87217721    rs11856329    C    G    372.29    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=29;Dels=0.0;FS=1.786;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.899;QD=12.84;ReadPosRankSum=-0.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389298    GT:AD:DP:GQ:PL    0/1:16,13:29:99:402,0,468
15    87531281    rs1006030    A    C    8149.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=59.82;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=T1049;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_87531218_87531323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGBL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421325    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8149,638,0
15    88576185    rs55703281    G    C    89.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.275;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.858;QD=4.26;ReadPosRankSum=-2.275;SNPEFF_AMINO_ACID_CHANGE=A398;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_88576088_88576276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542733    GT:AD:DP:GQ:PL    0/1:14,7:21:99:119,0,408
15    88669382    rs3825882    G    C    136.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317501    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:169,12,0
15    88678680    rs2059588    T    C    196.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317501    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:230,21,0
15    88679785    rs1863480    G    A    529.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=N128;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_88679698_88679840;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542733    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:562,42,0
15    88680684    rs1128994    G    A    571.04    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=2.042;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.665;QD=17.84;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=N191;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_88680635_88680792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317501    GT:AD:DP:GQ:PL    0/1:13,19:32:99:601,0,255
15    88680943    rs7168040    G    T    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317501    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
15    88726586    rs55725904    G    A    809.26    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.385;DB;DP=58;Dels=0.0;FS=18.107;HRun=0;HaplotypeScore=3.4273;MQ=60.0;MQ0=0;MQRankSum=-1.375;QD=13.95;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTRK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317501    GT:AD:DP:GQ:PL    0/1:32,26:58:99:839,0,861
15    89056040    rs13835    C    A    131.58    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;MQRankSum=1.179;QD=14.62;ReadPosRankSum=0.067;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268148    GT:AD:DP:GQ:PL    0/1:2,7:9:54.62:162,0,55
15    89056502    rs17190166    C    A    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268148    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
15    89081771    rs6496496    T    C    454.14    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=30;Dels=0.0;FS=2.207;HRun=1;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=-0.312;QD=15.14;ReadPosRankSum=1.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DET1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268148    GT:AD:DP:GQ:PL    0/1:16,14:30:99:484,0,498
15    89155014    rs41276928    C    T    97.67    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.387;QD=8.88;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1179;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408703    GT:AD:DP:GQ:PL    0/1:6,5:11:99:128,0,176
15    89169703    rs8026929    C    G    344.58    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.619;QD=18.14;ReadPosRankSum=0.372;SNPEFF_AMINO_ACID_CHANGE=S88C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89169377_89169980;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332810    GT:AD:DP:GQ:PL    0/1:8,11:19:99:375,0,262
15    89169858    rs8027765    A    G    1625.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=N140D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89169377_89169980;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332810    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1659,126,0
15    89172352    rs3826040    C    T    270.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332810    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:304,24,0
15    89172370    rs73451733    T    C    213.56    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=13.35;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332810    GT:AD:DP:GQ:PL    0/1:8,7:16:99:244,0,279
15    89172558    rs3743475    G    C    1882.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=31.9;SNPEFF_AMINO_ACID_CHANGE=T214;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89172457_89172657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332810    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1915,150,0
15    89173136    rs3826039    A    C    149.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.58;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AEN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332810    GT:AD:DP:GQ:PL    0/1:4,5:9:99:179,0,142
15    89183019    rs77518826    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306072    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    89195178    rs6496516    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_AMINO_ACID_CHANGE=V30;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89195089_89195541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546338    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    89195526    rs1137166    A    G    862.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=37.48;SNPEFF_AMINO_ACID_CHANGE=L138;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89195341_89195541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306072    GT:AD:DP:GQ:PL    1/1:0,23:23:69.18:895,69,0
15    89198560    rs8041687    A    G    281.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=28;Dels=0.0;FS=3.023;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.348;QD=10.06;ReadPosRankSum=-1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISG20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306072    GT:AD:DP:GQ:PL    0/1:16,12:28:99:312,0,573
15    89379295    rs938610    G    A    324.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:358,27,0
15    89383006    rs883325    T    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    89384733    rs34936657    AT    A    185.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=25.3204;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=26.49;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:2,5:7:4.04:225,4,0
15    89385151    rs2293087    T    G    793.03    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.352;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.125;QD=17.24;ReadPosRankSum=-0.816;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:21,25:46:99:823,0,636
15    89386543    rs67038426    AG    A    860.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=6;HaplotypeScore=88.1446;IndelType=D;MQ=60.33;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:1,28:29:84.21:903,84,0
15    89386652    rs34949187    G    A    585.60    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.204;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.222;QD=12.73;ReadPosRankSum=-1.108;SNPEFF_AMINO_ACID_CHANGE=R275Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89386586_89386879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:25,21:46:99:616,0,676
15    89391160    rs2272023    C    A    2440.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=59.05;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=P541;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89391142_89391269;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2473,190,0
15    89392745    rs1568116    T    C    974.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;DB;DP=35;Dels=0.0;FS=3.912;HRun=1;HaplotypeScore=0.9665;MQ=58.0;MQ0=0;MQRankSum=0.053;QD=27.85;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=A603;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89392669_89392962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:1,34:35:47.92:1008,48,0
15    89398105    rs2351491    C    T    674.03    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.119;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6673;MQ=59.42;MQ0=0;MQRankSum=1.11;QD=10.53;ReadPosRankSum=-1.612;SNPEFF_AMINO_ACID_CHANGE=P763;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89398083_89399037;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:37,27:64:99:704,0,1173
15    89398330    rs3743399    G    A    1707.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=30.49;SNPEFF_AMINO_ACID_CHANGE=S838;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89398083_89399037;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1740,129,0
15    89398553    rs35430524    C    A    1137.59    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.939;DB;DP=59;Dels=0.0;FS=5.616;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=0.321;QD=19.28;ReadPosRankSum=0.368;SNPEFF_AMINO_ACID_CHANGE=P913T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89398083_89399037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:22,37:59:99:1168,0,673
15    89398605    rs938608    G    T    923.08    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=69;Dels=0.0;FS=12.729;HRun=0;HaplotypeScore=0.0;MQ=56.89;MQ0=0;MQRankSum=-0.389;QD=13.38;ReadPosRankSum=0.92;SNPEFF_AMINO_ACID_CHANGE=S930I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89398083_89399037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:39,30:69:99:953,0,1249
15    89398631    rs938609    T    A    1434.63    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.975;DB;DP=97;Dels=0.0;FS=18.738;HRun=0;HaplotypeScore=0.9998;MQ=55.99;MQ0=0;MQRankSum=0.19;QD=14.79;ReadPosRankSum=-1.277;SNPEFF_AMINO_ACID_CHANGE=S939T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89398083_89399037;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:47,50:97:99:1465,0,1468
15    89400023    rs12899191    A    G    758.07    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.559;DB;DP=214;DS;Dels=0.0;FS=7.437;HRun=0;HaplotypeScore=2.3964;MQ=45.11;MQ0=19;MQRankSum=-1.711;QD=3.54;ReadPosRankSum=-2.591;SNPEFF_AMINO_ACID_CHANGE=T1289A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89399380_89402648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:148,66:214:99:788,0,4181
15    89400339    rs2882676    A    C    2152.14    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=158;Dels=0.0;FS=12.843;HRun=0;HaplotypeScore=2.5608;MQ=59.85;MQ0=0;MQRankSum=0.85;QD=13.62;ReadPosRankSum=1.446;SNPEFF_AMINO_ACID_CHANGE=E1394A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89399380_89402648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:87,70:158:99:2182,0,2716
15    89401109    rs4932439    A    G    2985.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=32.1;SNPEFF_AMINO_ACID_CHANGE=I1651V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89399380_89402648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3018,238,0
15    89401615    rs3825994    T    G    2226.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=T1819;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89399380_89402648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2260,178,0
15    89402051    rs1042630    A    G    1597.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=31.32;SNPEFF_AMINO_ACID_CHANGE=I1965V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89399380_89402648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1630,129,0
15    89402239    rs1042631    T    C    2796.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=33.69;SNPEFF_AMINO_ACID_CHANGE=L2027;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89399380_89402648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2830,220,0
15    89402596    rs698621    T    G    1313.06    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.653;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=59.52;MQ0=0;MQRankSum=1.351;QD=13.54;ReadPosRankSum=0.8;SNPEFF_AMINO_ACID_CHANGE=A2146;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89399380_89402648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:48,49:97:99:1343,0,1508
15    89402896    rs953066    G    A    35.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.92;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:66,0,33
15    89402925    rs953065    T    C    75.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
15    89421120    rs80355480    G    T    212.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=17.72;ReadPosRankSum=-1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268134    GT:AD:DP:GQ:PL    0/1:4,8:12:96.96:243,0,97
15    89421327    rs2280463    A    G    804.72    PASS    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=2.212;DB;DP=73;Dels=0.0;FS=2.157;HRun=0;HaplotypeScore=0.734;MQ=59.05;MQ0=0;MQRankSum=-0.907;QD=11.02;ReadPosRankSum=1.115;SNPEFF_AMINO_ACID_CHANGE=G319;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89420519_89421487;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAPLN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359595    GT:AD:DP:GQ:PL    0/1:45,28:73:99:835,0,1267
15    89444760    rs2015495    T    C    225.38    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.666;QD=25.04;ReadPosRankSum=1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFGE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268150    GT:AD:DP:GQ:PL    0/1:2,7:9:53.56:255,0,54
15    89449627    rs2271715    G    A    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFGE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268150    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
15    89450312    rs1878328    T    C    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFGE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268150    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
15    89450546    rs1878327    C    T    543.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=S45;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89450426_89450607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFGE8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542878    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:577,42,0
15    89450587    rs1878326    G    T    968.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=L32M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89450426_89450607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFGE8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542878    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:1001,72,0
15    89453184    rs72749922    A    G    543.21    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.961;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.54;MQ0=0;MQRankSum=0.452;QD=10.86;ReadPosRankSum=-0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFGE8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268150    GT:AD:DP:GQ:PL    0/1:30,19:50:99:573,0,818
15    89718913    rs1005399    C    T    114.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=16.4;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352732    GT:AD:DP:GQ:PL    0/1:3,4:7:99:145,0,105
15    89719375    rs1005398    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352732    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,72
15    89731347    rs2239288    G    C    230.19    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.635;QD=19.18;ReadPosRankSum=1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352732    GT:AD:DP:GQ:PL    0/1:5,7:12:99:260,0,163
15    89736558    rs6496562    T    C    381.70    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.499;DB;DP=38;Dels=0.0;FS=3.375;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.703;QD=10.04;ReadPosRankSum=1.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352732    GT:AD:DP:GQ:PL    0/1:21,17:38:99:412,0,676
15    89738265    rs8025822    C    T    132.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352732    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
15    89753349    rs834    A    C    61.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=7.66;ReadPosRankSum=0.421;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268125    GT:AD:DP:GQ:PL    0/1:4,4:8:91.30:91,0,140
15    89754864    rs950540    C    T    132.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=12.08;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268125    GT:AD:DP:GQ:PL    0/1:6,5:11:99:163,0,197
15    89754954    rs950541    G    A    679.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.012;DB;DP=42;Dels=0.0;FS=1.368;HRun=1;HaplotypeScore=0.9332;MQ=59.45;MQ0=0;MQRankSum=1.69;QD=16.17;ReadPosRankSum=-1.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268125    GT:AD:DP:GQ:PL    0/1:18,24:42:99:709,0,401
15    89758552    rs4932483    A    G    189.53    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=-0.817;QD=14.58;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268125    GT:AD:DP:GQ:PL    0/1:5,8:13:99:220,0,134
15    89761664    rs3825991    C    A    113.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=16.26;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268125    GT:AD:DP:GQ:PL    0/1:3,4:7:99:144,0,104
15    89804043    rs17803620    C    T    705.91    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.287;DB;DP=58;Dels=0.0;FS=1.031;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=12.17;ReadPosRankSum=0.519;SNPEFF_AMINO_ACID_CHANGE=A86V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89803944_89804074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:31,27:58:99:736,0,896
15    89804111    rs16942918    G    A    530.93    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=2.322;QD=11.8;ReadPosRankSum=-0.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:24,21:45:99:561,0,801
15    89806710    rs1981623    C    T    251.38    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=34;Dels=0.0;FS=3.261;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.104;QD=7.39;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:19,15:34:99:281,0,637
15    89806721    rs1981624    G    A    395.46    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.845;DB;DP=34;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.017;QD=11.63;ReadPosRankSum=0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:18,16:34:99:425,0,587
15    89811482    rs7497351    T    C    40.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.05;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451393    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:70,0,66
15    89811543    rs7496308    G    C    287.07    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=17.94;ReadPosRankSum=-1.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451393    GT:AD:DP:GQ:PL    0/1:6,10:16:99:317,0,182
15    89816541    rs72300014    TA    T    261.81    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.293;DB;DP=48;FS=1.97;HRun=16;HaplotypeScore=354.8942;IndelType=D;MQ=54.27;MQ0=0;MQRankSum=1.791;QD=5.45;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:34,11:48:99:301,0,206
15    89816557    rs60761593    AG    A    233.61    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=4.41;DB;DP=77;FS=35.903;HRun=1;HaplotypeScore=434.1585;IndelType=D;MQ=54.89;MQ0=0;MQRankSum=-0.836;QD=3.03;ReadPosRankSum=2.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:63,14:77:99:273,0,961
15    89816742    rs72401852    TAA    T    72.31    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.801;DB;DP=67;FS=0.0;HRun=24;HaplotypeScore=521.8377;IndelType=D;MQ=47.01;MQ0=0;MQRankSum=1.082;QD=1.08;ReadPosRankSum=1.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:53,6:67:99:111,0,164
15    89817689    rs11073853    G    C    59.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.92;QD=7.45;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:5,3:8:89.60:90,0,188
15    89824258    rs1990229    A    C    191.67    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=19.17;ReadPosRankSum=1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:3,7:10:96.55:222,0,97
15    89826496    rs9806604    C    T    1879.75    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=5.98;DB;DP=141;Dels=0.0;FS=2.624;HRun=0;HaplotypeScore=7.5215;MQ=59.51;MQ0=0;MQRankSum=0.753;QD=13.33;ReadPosRankSum=-0.808;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:74,67:141:99:1910,0,2165
15    89836228    rs2283432    G    C    1171.81    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.409;DB;DP=61;Dels=0.0;FS=1.047;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.752;QD=19.21;ReadPosRankSum=-0.707;SNPEFF_AMINO_ACID_CHANGE=C742S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89836173_89836294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:23,38:61:99:1202,0,742
15    89838045    rs2283431    G    A    491.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:525,39,0
15    89838236    rs7183618    G    A    1478.95    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.463;DB;DP=126;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.7645;MQ=59.63;MQ0=0;MQRankSum=-0.408;QD=11.74;ReadPosRankSum=-1.597;SNPEFF_AMINO_ACID_CHANGE=K849;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89838146_89838325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310775    GT:AD:DP:GQ:PL    0/1:66,60:126:99:1509,0,1916
15    89844688    rs2159081    A    C    647.11    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.695;DB;DP=48;Dels=0.0;FS=2.581;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.565;QD=13.48;ReadPosRankSum=2.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:23,25:48:99:677,0,630
15    89844849    rs12592258    C    T    38.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.77;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:3,2:5:68.84:69,0,81
15    89844860    rs12592110    G    A    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:3,2:5:66.25:66,0,99
15    89858602    rs1138465    T    C    564.53    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.603;DB;DP=62;Dels=0.0;FS=7.463;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.756;QD=9.11;ReadPosRankSum=-0.817;SNPEFF_AMINO_ACID_CHANGE=G1242;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89858513_89858620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:33,28:62:99:595,0,1115
15    89859932    rs3087377    A    AC    453.47    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.899;DB;DP=23;FS=2.521;HRun=2;HaplotypeScore=74.4713;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=19.72;ReadPosRankSum=-0.651;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447611    GT:AD:DP:GQ:PL    0/1:10,13:23:99:493,0,303
15    89859994    rs3087374    C    A    537.37    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=37;Dels=0.0;FS=1.366;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=3.01;QD=14.52;ReadPosRankSum=-0.444;SNPEFF_AMINO_ACID_CHANGE=Q1236H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_89859534_89860058;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268124    GT:AD:DP:GQ:PL    0/1:18,19:37:99:567,0,484
15    89860427    rs3176238    C    T    36.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.31;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310775    GT:AD:DP:GQ:PL    0/1:2,3:5:66.54:67,0,73
15    89860786    rs2307438    A    C    791.46    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.229;DB;DP=53;Dels=0.0;FS=8.143;HRun=1;HaplotypeScore=1.9399;MQ=59.29;MQ0=0;MQRankSum=0.365;QD=14.93;ReadPosRankSum=-0.863;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:27,26:53:99:821,0,718
15    89862341    rs2302084    A    G    1013.21    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.141;DB;DP=68;Dels=0.0;FS=3.745;HRun=1;HaplotypeScore=0.9967;MQ=59.39;MQ0=0;MQRankSum=1.59;QD=14.9;ReadPosRankSum=0.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1043,0,953
15    89862366    rs2246900    T    C    750.08    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.232;DB;DP=57;Dels=0.0;FS=6.462;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=13.16;ReadPosRankSum=-0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:31,26:57:99:780,0,1030
15    89863928    rs2307449    T    G    110.14    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.24;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:4,5:9:99:140,0,134
15    89864316    rs2307433    G    GCTAC    4033.48    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.785;DB;DP=104;FS=0.0;HRun=0;HaplotypeScore=377.3548;IndelType=I;MQ=58.06;MQ0=0;MQRankSum=-0.837;QD=38.78;ReadPosRankSum=-0.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:53,51:104:99:4033,0,2496
15    89864763    rs3176208    G    T    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.79;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300027    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,95
15    89865692    rs3176205    T    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526314    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
15    89866954    rs2072266    A    G    121.78    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=7.61;ReadPosRankSum=0.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532363    GT:AD:DP:GQ:PL    0/1:11,5:16:99:152,0,376
15    89867154    rs2072267    A    G    265.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.578;MQ=60.0;MQ0=0;MQRankSum=-0.97;QD=8.31;ReadPosRankSum=-1.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532363    GT:AD:DP:GQ:PL    0/1:20,12:32:99:296,0,739
15    89876236    rs2283430    C    A    200.37    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.592;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.215;QD=6.68;ReadPosRankSum=0.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268124    GT:AD:DP:GQ:PL    0/1:19,11:30:99:230,0,575
15    90022438    rs78940601    A    G    112.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=16.01;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268122    GT:AD:DP:GQ:PL    0/1:3,4:7:65.93:142,0,66
15    90026485    rs4932134    T    C    80.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.0;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268122    GT:AD:DP:GQ:PL    0/1:4,4:8:99:110,0,107
15    90126121    rs10775247    C    T    1571.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.51;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=R287C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90125917_90126196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1604,117,0
15    90127775    rs117209589    C    T    360.92    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.886;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=1.028;QD=10.62;ReadPosRankSum=-0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    0/1:21,13:34:99:391,0,583
15    90128834    rs11639246    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
15    90128966    rs11629584    C    T    834.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_AMINO_ACID_CHANGE=R402W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90128939_90129173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:868,63,0
15    90129188    rs1540504    T    C    1207.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,34:34:90.30:1240,90,0
15    90129227    rs1540503    A    C    653.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:687,54,0
15    90135172    rs35892197    C    T    125.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
15    90135196    rs8041127    A    G    150.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:183,15,0
15    90135432    rs34494298    A    G    1275.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,40:40:96.29:1309,96,0
15    90138670    rs8042146    C    T    1589.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.63;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=C576;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90138624_90138842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1622,123,0
15    90142287    rs8039002    G    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
15    90142345    rs8024868    T    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
15    90144851    rs4932233    T    C    1907.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1941,153,0
15    90144894    rs4932234    T    C    1880.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1913,150,0
15    90144944    rs4244876    G    A    2318.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2351,172,0
15    90152325    .    G    T    31.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=5.4976;MQ=51.77;MQ0=0;MQRankSum=0.0;QD=5.33;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    0/1:2,4:6:61.97:62,0,67
15    90161104    rs12148152    A    G    81.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=27.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
15    90161134    rs12148154    A    G    82.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
15    90161355    rs2289486    G    A    4346.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,126:126:99:4347,316,0
15    90168108    rs894157    C    T    2161.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=59.63;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=R1523C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90166854_90169017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2194,163,0
15    90172133    rs12914042    C    G    1752.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.18;MQ0=0;QD=34.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1785,132,0
15    90172419    rs143394914    GGGGTGGGGGCTGTGGGCTGGGT    G    512.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=155.4302;IndelType=D;MQ=46.84;MQ0=0;QD=64.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268138    GT:AD:DP:GQ:PL    1/1:3,5:8:15.05:554,15,0
15    90172778    rs142032413    G    C    849.23    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=0.966;DB;DP=61;Dels=0.0;FS=3.633;HRun=0;HaplotypeScore=0.0;MQ=57.69;MQ0=0;MQRankSum=0.486;QD=13.92;ReadPosRankSum=1.779;SNPEFF_AMINO_ACID_CHANGE=H1115Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90172606_90172804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    0/1:27,34:61:99:879,0,727
15    90174789    rs9672286    C    T    126.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_AMINO_ACID_CHANGE=S1016;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90174726_90174941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
15    90174824    rs12900805    C    T    107.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.94;SNPEFF_AMINO_ACID_CHANGE=G1005R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90174726_90174941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
15    90176073    rs3803530    C    A    476.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.76;SNPEFF_AMINO_ACID_CHANGE=S958I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90176051_90176227;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:1,15:16:39.12:509,39,0
15    90176432    rs3803531    T    G    132.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=A886;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90176372_90176497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
15    90177159    rs11633151    C    T    643.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=57.97;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:676,54,0
15    90188514    rs894159    A    G    980.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445906    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1014,78,0
15    90190048    rs1110060    A    G    971.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445906    GT:AD:DP:GQ:PL    1/1:0,32:32:81.21:1004,81,0
15    90191355    rs12906938    T    C    293.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445906    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
15    90192905    rs4932240    T    C    323.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:357,27,0
15    90195765    rs11630003    A    G    57.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:90,9,0
15    90195766    rs11630004    A    G    56.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:89,9,0
15    90195967    rs8179066    C    G    117.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_AMINO_ACID_CHANGE=A65;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90195834_90196185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394412    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
15    90209135    rs8179074    G    A    152.08    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=0.573;QD=15.21;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=F416;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90207596_90209173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300055    GT:AD:DP:GQ:PL    0/1:3,7:10:85.40:182,0,85
15    90210263    rs2304795    A    G    206.43    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.616;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.08;MQ0=0;MQRankSum=-0.181;QD=9.38;ReadPosRankSum=1.992;SNPEFF_AMINO_ACID_CHANGE=P371;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90210167_90210412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300055    GT:AD:DP:GQ:PL    0/1:13,9:22:99:236,0,375
15    90210437    rs4032998    C    A    389.94    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.889;DB;DP=28;Dels=0.0;FS=1.576;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.967;QD=13.93;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300055    GT:AD:DP:GQ:PL    0/1:13,15:28:99:420,0,354
15    90211047    rs894162    A    T    179.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300055    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:213,15,0
15    90212612    rs1561724    C    G    450.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300055    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:483,36,0
15    90213134    rs2304794    T    A    168.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300055    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
15    90213229    rs6496589    G    C    605.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=P194A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90213211_90213475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300055    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:638,48,0
15    90226947    rs7169981    C    A    3377.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=59.58;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=L135;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90224762_90227179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300056    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3378,256,0
15    90281045    rs11638276    C    G    585.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268130    GT:AD:DP:GQ:PL    1/1:0,19:19:54.12:618,54,0
15    90293794    rs2305440    G    C    63.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.406;QD=9.01;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=F223L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90293740_90294541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MESP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300057    GT:AD:DP:GQ:PL    0/1:4,3:7:75.58:93,0,76
15    90342466    rs117770999    C    T    279.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.523;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.457;QD=13.33;ReadPosRankSum=-1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANPEP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300060    GT:AD:DP:GQ:PL    0/1:9,12:21:99:310,0,322
15    90344352    rs8192297    T    C    477.10    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.904;DB;DP=36;Dels=0.0;FS=3.368;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.05;QD=13.25;ReadPosRankSum=-0.513;SNPEFF_AMINO_ACID_CHANGE=I603M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90344342_90344418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANPEP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300060    GT:AD:DP:GQ:PL    0/1:16,19:36:99:507,0,504
15    90414642    rs3759831    C    G    283.87    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.799;QD=17.74;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3S2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336418    GT:AD:DP:GQ:PL    0/1:7,9:16:99:314,0,232
15    90446653    rs1256843    C    T    780.08    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.074;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.62;MQ0=0;MQRankSum=1.228;QD=13.0;ReadPosRankSum=-0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf38-AP3S2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398333    GT:AD:DP:GQ:PL    0/1:31,29:60:99:810,0,1014
15    90455379    rs1256837    C    G    155.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf38-AP3S2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398333    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:189,15,0
15    90611663    .    C    T    541.37    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=1.089;DP=50;Dels=0.0;FS=6.054;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.176;QD=10.83;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=P432S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90610342_90611827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF710;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268154    GT:AD:DP:GQ:PL    0/1:31,19:50:99:571,0,960
15    90616132    rs9806319    G    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF710;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268154    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
15    90616617    rs2277556    T    C    256.37    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.312;QD=19.72;ReadPosRankSum=1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF710;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268154    GT:AD:DP:GQ:PL    0/1:4,9:13:99:286,0,111
15    90617245    .    C    A    37.50    QDFilter2    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DP=19;Dels=0.0;FS=2.963;HRun=12;HaplotypeScore=4.5311;MQ=47.89;MQ0=0;MQRankSum=-3.325;QD=1.97;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF710;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268154    GT:AD:DP:GQ:PL    0/1:12,7:19:67.50:67,0,263
15    90617539    rs6496620    C    T    204.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.203;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=12.75;ReadPosRankSum=-1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF710;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268154    GT:AD:DP:GQ:PL    0/1:8,8:16:99:234,0,289
15    90623052    rs2970357    T    C    150.64    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.657;DB;DP=21;Dels=0.0;FS=2.128;HRun=0;HaplotypeScore=0.734;MQ=59.11;MQ0=0;MQRankSum=-0.326;QD=7.17;ReadPosRankSum=-1.123;SNPEFF_AMINO_ACID_CHANGE=N662;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90622892_90625432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF710;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268154    GT:AD:DP:GQ:PL    0/1:13,8:21:99:181,0,471
15    90627616    rs60147683    T    C    112.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=12.53;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF710;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268154    GT:AD:DP:GQ:PL    0/1:4,5:9:99:143,0,139
15    90630892    rs9972327    C    A    172.57    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.786;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=6.64;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330062    GT:AD:DP:GQ:PL    0/1:17,9:26:99:203,0,528
15    90634941    rs10852126    A    G    572.05    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.611;DB;DP=28;Dels=0.0;FS=6.668;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=20.43;ReadPosRankSum=1.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330062    GT:AD:DP:GQ:PL    0/1:9,19:28:99:602,0,254
15    90744960    rs12050812    G    A    30.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.09;ReadPosRankSum=1.38;SNPEFF_AMINO_ACID_CHANGE=L45;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90744690_90744967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379122    GT:AD:DP:GQ:PL    0/1:4,2:6:60.52:61,0,148
15    90766754    rs908048    A    G    313.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332496    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:346,27,0
15    90768156    rs1040083    A    G    1126.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6918;MQ=58.2;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332496    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1159,99,0
15    90768959    rs908044    A    C    126.79    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.453;QD=10.57;ReadPosRankSum=-0.336;SNPEFF_AMINO_ACID_CHANGE=R525;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90768893_90769059;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379122    GT:AD:DP:GQ:PL    0/1:6,5:12:99:157,0,160
15    90771750    rs3751655    T    G    249.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.038;DB;DP=20;Dels=0.0;FS=1.871;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.643;QD=12.48;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=S797A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90771136_90772892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332496    GT:AD:DP:GQ:PL    0/1:10,10:20:99:280,0,294
15    90772005    rs11547962    G    A    110.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.42;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328649    GT:AD:DP:GQ:PL    0/1:2,4:6:64.59:140,0,65
15    90775643    rs4451921    G    A    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.84;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332496    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
15    90784207    rs7166441    A    G    4033.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.13;MQ0=0;QD=30.1;SNPEFF_AMINO_ACID_CHANGE=R23G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90784141_90785298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329600    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4034,337,0
15    90784250    rs7171194    T    C    2381.99    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.017;DB;DP=206;Dels=0.0;FS=6.047;HRun=0;HaplotypeScore=2.7202;MQ=59.64;MQ0=0;MQRankSum=-0.867;QD=11.56;ReadPosRankSum=0.98;SNPEFF_AMINO_ACID_CHANGE=M37T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90784141_90785298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329600    GT:AD:DP:GQ:PL    0/1:116,90:206:99:2412,0,3381
15    90784930    rs10152994    C    A    711.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.262;DB;DP=54;Dels=0.0;FS=2.39;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.74;QD=13.17;ReadPosRankSum=1.384;SNPEFF_AMINO_ACID_CHANGE=P264T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90784141_90785298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329600    GT:AD:DP:GQ:PL    0/1:30,24:54:99:741,0,1020
15    90785060    rs10153004    C    T    967.29    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.235;DB;DP=67;Dels=0.0;FS=11.65;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.019;QD=14.44;ReadPosRankSum=-1.273;SNPEFF_AMINO_ACID_CHANGE=T307I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90784141_90785298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329600    GT:AD:DP:GQ:PL    0/1:34,33:67:99:997,0,1051
15    90794757    rs4357917    T    G    3022.73    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.737;DB;DP=190;Dels=0.0;FS=2.657;HRun=0;HaplotypeScore=3.6686;MQ=59.51;MQ0=0;MQRankSum=-0.074;QD=15.91;ReadPosRankSum=0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339615    GT:AD:DP:GQ:PL    0/1:88,102:190:99:3053,0,2726
15    90802227    rs67188155    G    T    293.80    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=20.99;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438251    GT:AD:DP:GQ:PL    0/1:5,9:14:99:324,0,169
15    90809633    rs9635390    G    A    261.46    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=20.11;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438251    GT:AD:DP:GQ:PL    0/1:5,8:13:99:291,0,171
15    90837691    rs2003172    C    G    66.93    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.9578;MQ=53.75;MQ0=0;MQRankSum=-2.037;QD=6.08;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC091167.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469674    GT:AD:DP:GQ:PL    0/1:7,4:11:96.92:97,0,255
15    90837693    rs2003173    G    A    57.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=0.0;MQ=54.3;MQ0=0;MQRankSum=-1.239;QD=4.77;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC091167.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469674    GT:AD:DP:GQ:PL    0/1:8,4:12:87.23:87,0,244
15    90837721    rs1810246    T    C    46.10    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=13;Dels=0.0;FS=6.264;HRun=1;HaplotypeScore=0.0;MQ=52.78;MQ0=0;MQRankSum=-2.404;QD=3.55;ReadPosRankSum=-0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC091167.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469674    GT:AD:DP:GQ:PL    0/1:10,3:13:76.09:76,0,253
15    90838041    rs7183871    G    A    922.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.976;DB;DP=63;Dels=0.0;FS=7.038;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-2.29;QD=14.64;ReadPosRankSum=1.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC091167.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469674    GT:AD:DP:GQ:PL    0/1:27,36:63:99:953,0,711
15    90838253    rs8023427    G    A    1155    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=3.481;DB;DP=72;Dels=0.0;FS=1.91;HRun=0;HaplotypeScore=1.6649;MQ=59.68;MQ0=0;MQRankSum=-0.124;QD=16.04;ReadPosRankSum=1.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC091167.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469674    GT:AD:DP:GQ:PL    0/1:33,39:72:99:1185,0,972
15    90838350    rs35925382    C    T    906.64    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.4;MQ0=0;MQRankSum=0.999;QD=11.77;ReadPosRankSum=-1.187;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC091167.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469674    GT:AD:DP:GQ:PL    0/1:40,37:77:99:937,0,1182
15    90838759    rs10152346    G    A    556.12    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.476;DB;DP=48;Dels=0.0;FS=1.156;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.964;QD=11.59;ReadPosRankSum=-1.008;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091167.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408382    GT:AD:DP:GQ:PL    0/1:28,20:48:99:586,0,878
15    90838955    rs8034911    T    A    944.67    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.537;DB;DP=57;Dels=0.0;FS=5.412;HRun=0;HaplotypeScore=2.5476;MQ=57.73;MQ0=0;MQRankSum=-0.253;QD=16.57;ReadPosRankSum=0.515;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091167.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408382    GT:AD:DP:GQ:PL    0/1:20,36:57:99:975,0,625
15    90839021    rs71461860    T    TAA    325.45    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DB;DP=27;FS=2.73;HRun=14;HaplotypeScore=213.566;IndelType=I;MQ=56.92;MQ0=0;MQRankSum=0.112;QD=12.05;ReadPosRankSum=0.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC091167.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408382    GT:AD:DP:GQ:PL    0/1:14,10:27:99:364,0,115
15    90903311    rs2589957    A    G    850.13    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.798;DB;DP=69;Dels=0.0;FS=0.917;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.519;QD=12.32;ReadPosRankSum=0.853;SNPEFF_AMINO_ACID_CHANGE=N83S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90903275_90904714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF774;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354377    GT:AD:DP:GQ:PL    0/1:39,30:69:99:880,0,1176
15    90903502    rs11854320    G    A    607.35    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=41;Dels=0.0;FS=2.709;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.665;QD=14.81;ReadPosRankSum=-1.135;SNPEFF_AMINO_ACID_CHANGE=V147I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_90903275_90904714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF774;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354377    GT:AD:DP:GQ:PL    0/1:20,21:41:99:637,0,654
15    90969335    rs2256388    G    T    361.07    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.281;DB;DP=35;Dels=0.0;FS=1.407;HRun=3;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=10.32;ReadPosRankSum=-0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:19,16:35:99:391,0,643
15    90982482    rs7177137    A    T    278.79    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=21.45;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:4,9:13:99:309,0,121
15    90982756    rs6496675    C    T    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.25;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:3,2:5:66.25:66,0,89
15    91009484    rs2074585    G    A    882.71    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=0.359;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.842;QD=15.22;ReadPosRankSum=-0.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:27,31:58:99:913,0,841
15    91010776    rs1505936    T    C    634.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.688;DB;DP=44;Dels=0.0;FS=1.172;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.387;QD=14.41;ReadPosRankSum=0.833;SNPEFF_AMINO_ACID_CHANGE=P710;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91010682_91010824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:22,22:44:99:664,0,639
15    91017232    rs1145325    G    A    497.84    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=2.026;QD=13.1;ReadPosRankSum=-0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:17,21:38:99:528,0,579
15    91017274    rs10657378    T    TTTC    935.26    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.243;DB;DP=34;FS=1.412;HRun=0;HaplotypeScore=150.9885;IndelType=I;MQ=57.56;MQ0=0;MQRankSum=0.02;QD=27.51;ReadPosRankSum=0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:18,16:34:99:974,0,543
15    91030640    rs3833031    GTGC    G    271.70    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=90.2885;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.377;QD=16.98;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:8,7:16:99:311,0,150
15    91031048    rs16974215    C    T    32.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
15    91034456    rs6496678    A    G    52.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=6.55;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:4,4:8:82.36:82,0,135
15    91034559    rs6496679    C    G    636.59    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.721;QD=12.24;ReadPosRankSum=2.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:32,20:52:99:667,0,1105
15    91043192    rs71988271    A    ATGTTT    341.18    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=11;FS=4.771;HRun=0;HaplotypeScore=56.6656;IndelType=I;MQ=55.53;MQ0=0;MQRankSum=0.736;QD=31.02;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268182    GT:AD:DP:GQ:PL    0/1:5,4:11:16.78:380,0,17
15    91083353    rs8033595    G    A    1028.80    PASS    AB=0.365;AC=1;AF=0.50;AN=2;BaseQRankSum=1.724;DB;DP=52;Dels=0.0;FS=2.617;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.38;QD=19.78;ReadPosRankSum=1.802;SNPEFF_AMINO_ACID_CHANGE=S36N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91083271_91083369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437186    GT:AD:DP:GQ:PL    0/1:19,33:52:99:1059,0,513
15    91145800    rs4932352    C    T    150.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.03;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268184    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:184,15,0
15    91145838    rs4932353    T    C    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268184    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
15    91147512    rs1104880    A    G    350.69    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=20.63;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268184    GT:AD:DP:GQ:PL    0/1:5,12:17:99:381,0,151
15    91181567    rs6496717    C    T    318.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268184    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:352,27,0
15    91312313    rs17273206    G    A    482.31    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.576;QD=15.56;ReadPosRankSum=0.258;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    0/1:14,17:31:99:512,0,401
15    91312823    rs3815003    T    C    109.30    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.433;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8737;MQ=60.0;MQ0=0;MQRankSum=0.701;QD=5.2;ReadPosRankSum=1.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    0/1:14,7:21:99:139,0,482
15    91334179    rs2072352    G    A    188.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.84;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    0/1:4,6:10:99:218,0,136
15    91337479    rs2227933    G    A    741.69    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.995;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.58;MQ0=0;MQRankSum=0.227;QD=13.49;ReadPosRankSum=-0.833;SNPEFF_AMINO_ACID_CHANGE=T1034;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91337397_91337587;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    0/1:28,27:55:99:772,0,860
15    91341599    rs17273842    T    G    514.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.778;DB;DP=42;Dels=0.0;FS=1.478;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.483;QD=12.25;ReadPosRankSum=1.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    0/1:21,21:42:99:545,0,726
15    91346630    rs11377009    C    CA    427.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=21.4246;IndelType=I;MQ=61.07;MQ0=0;QD=42.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:470,30,0
15    91346923    rs2227934    C    A    606.27    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.521;DB;DP=48;Dels=0.0;FS=2.541;HRun=0;HaplotypeScore=0.5784;MQ=57.65;MQ0=0;MQRankSum=1.252;QD=12.63;ReadPosRankSum=-0.424;SNPEFF_AMINO_ACID_CHANGE=A1177;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91346751_91346950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    0/1:26,22:48:99:636,0,810
15    91347135    rs28385139    C    A    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
15    91347302    rs2301602    G    A    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
15    91352774    rs436723    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    91354505    rs1063147    C    T    1114.81    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.397;DB;DP=72;Dels=0.0;FS=3.185;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.698;QD=15.48;ReadPosRankSum=0.987;SNPEFF_AMINO_ACID_CHANGE=L1315;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91354435_91354636;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355112    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1145,0,950
15    91358271    rs10685387    G    GGAA    687.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=56.6204;IndelType=I;MQ=50.27;MQ0=0;QD=52.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543977    GT:AD:DP:GQ:PL    1/1:1,11:13:33.11:729,33,0
15    91424574    rs6226    G    C    652.25    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=57;Dels=0.0;FS=2.369;HRun=0;HaplotypeScore=1.4679;MQ=58.78;MQ0=0;MQRankSum=0.716;QD=11.44;ReadPosRankSum=-0.548;SNPEFF_AMINO_ACID_CHANGE=G617;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91424516_91426688;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FURIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268171    GT:AD:DP:GQ:PL    0/1:31,26:57:99:682,0,874
15    91428197    rs2071382    T    C    1701.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FURIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268171    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1734,129,0
15    91428290    rs11539637    C    T    3168.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5953;MQ=59.03;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=S5;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91428267_91428488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328850    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3201,235,0
15    91428589    rs7183988    T    G    462.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=25.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416779    GT:AD:DP:GQ:PL    1/1:0,18:18:42.10:496,42,0
15    91428636    rs7177338    G    A    591.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416779    GT:AD:DP:GQ:PL    1/1:0,19:19:48.12:625,48,0
15    91430436    rs2071383    T    C    2498.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_AMINO_ACID_CHANGE=A110;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91430417_91430600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FES;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394300    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2531,184,0
15    91430617    rs2071384    G    A    233.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416779    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:267,21,0
15    91433265    rs4932376    C    G    220.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=24.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416779    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:253,21,0
15    91435422    rs12909124    G    A    782.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448367    GT:AD:DP:GQ:PL    1/1:0,23:23:69.19:815,69,0
15    91450236    rs74470807    G    A    94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=15;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=6.27;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360468    GT:AD:DP:GQ:PL    0/1:10,5:15:99:124,0,328
15    91453186    rs55689110    A    C    95.05    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.876;QD=10.56;ReadPosRankSum=-1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAN2A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360468    GT:AD:DP:GQ:PL    0/1:4,5:9:99:125,0,141
15    91483531    rs17593423    C    T    345.19    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.458;DB;DP=32;Dels=0.0;FS=1.422;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=10.79;ReadPosRankSum=0.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UNC45A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495068    GT:AD:DP:GQ:PL    0/1:19,13:32:99:375,0,621
15    91504900    rs77876906    C    T    496.42    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=45;Dels=0.0;FS=4.669;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.971;QD=11.03;ReadPosRankSum=0.213;SNPEFF_AMINO_ACID_CHANGE=R133;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91504848_91504999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCCD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000556333    GT:AD:DP:GQ:PL    0/1:26,19:45:99:526,0,697
15    91517584    .    C    A    151.59    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=25.27;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556982    GT:AD:DP:GQ:PL    0/1:1,5:6:3.63:181,0,4
15    91524841    rs7172758    G    T    1272.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=37.44;SNPEFF_AMINO_ACID_CHANGE=A146E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_91524729_91524899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442656    GT:AD:DP:GQ:PL    1/1:0,34:34:96.32:1306,96,0
15    91524915    rs147700515    A    G    501.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=40;Dels=0.0;FS=9.729;HRun=0;HaplotypeScore=0.734;MQ=59.42;MQ0=0;MQRankSum=-0.676;QD=12.55;ReadPosRankSum=-0.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555745    GT:AD:DP:GQ:PL    0/1:24,16:40:99:532,0,847
15    91546087    rs11437266    T    TA    251.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=13.7355;IndelType=I;MQ=61.53;MQ0=0;QD=35.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS33B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556096    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
15    91550818    rs192781432    C    A    43.25    QDFilter2    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.162;DB;DP=35;Dels=0.0;FS=13.691;HRun=2;HaplotypeScore=1.5741;MQ=48.36;MQ0=0;MQRankSum=-2.025;QD=1.24;ReadPosRankSum=2.594;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS33B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554264    GT:AD:DP:GQ:PL    0/1:13,22:35:73.24:73,0,381
15    91574757    rs1443253    G    C    288.57    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=12.55;ReadPosRankSum=0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC068831.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501381    GT:AD:DP:GQ:PL    0/1:12,11:23:99:319,0,360
15    91575297    rs11629955    T    C    358.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.62;DB;DP=28;Dels=0.0;FS=6.262;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=12.8;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC068831.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501381    GT:AD:DP:GQ:PL    0/1:14,14:28:99:388,0,427
15    91575419    rs9920813    G    A    158.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=15;Dels=0.0;FS=6.41;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=10.6;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC068831.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501381    GT:AD:DP:GQ:PL    0/1:9,6:15:99:189,0,293
15    91575429    rs9920815    G    T    217.47    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=4.713;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=11.45;ReadPosRankSum=0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC068831.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000501381    GT:AD:DP:GQ:PL    0/1:11,8:19:99:247,0,347
15    91769465    rs2073967    G    A    401.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545111    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:434,33,0
15    91801907    rs1075840    T    G    566.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330276    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:599,45,0
15    91810011    rs11629714    C    T    480.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SV2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330276    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:514,39,0
15    92459187    rs4077721    T    C    819.98    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=57;Dels=0.0;FS=5.821;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.539;QD=14.39;ReadPosRankSum=-0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318445    GT:AD:DP:GQ:PL    0/1:25,32:57:99:850,0,712
15    92647304    rs77421906    G    A    115.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9748;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=11.58;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318445    GT:AD:DP:GQ:PL    0/1:5,5:10:99:146,0,162
15    92647645    rs1517618    G    C    1062.32    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.311;DB;DP=62;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=17.13;ReadPosRankSum=0.485;SNPEFF_AMINO_ACID_CHANGE=E13D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_92647509_92647772;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO3A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555549    GT:AD:DP:GQ:PL    0/1:24,37:62:99:1092,0,609
15    92647834    rs917355    A    G    70.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.03;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556649    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,143
15    92663496    rs6496892    C    T    244.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318445    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
15    92663630    rs6496893    A    G    2078.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318445    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2111,166,0
15    92690548    rs732546    A    G    70.13    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=10.02;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318445    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,144
15    92937137    rs142883061    T    C    54.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539113    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
15    93015321    rs1455774    T    G    71.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=11.85;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268164    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,104
15    93015427    rs1455773    G    A    118.91    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=6.26;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=A17T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_93014884_93015752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333334    GT:AD:DP:GQ:PL    0/1:11,8:19:99:149,0,353
15    93016049    rs145499675    C    G    178.62    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.58;QD=17.86;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268164    GT:AD:DP:GQ:PL    0/1:3,7:10:97.11:209,0,97
15    93016128    rs13380006    C    T    562.79    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.951;DB;DP=49;Dels=0.0;FS=14.592;HRun=1;HaplotypeScore=2.5446;MQ=59.53;MQ0=0;MQRankSum=0.478;QD=11.49;ReadPosRankSum=0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268164    GT:AD:DP:GQ:PL    0/1:28,21:49:99:593,0,914
15    93043545    rs7178722    T    G    280.42    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DB;DP=29;Dels=0.0;FS=5.639;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.173;QD=9.67;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C15orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333334    GT:AD:DP:GQ:PL    0/1:17,12:29:99:310,0,538
15    93198784    rs2438194    A    G    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_AMINO_ACID_CHANGE=W36R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_93198546_93199188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM174B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327355    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
15    93255319    rs35095971    G    A    4346.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=55.33;MQ0=0;QD=31.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM174B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556424    GT:AD:DP:GQ:PL    1/1:0,136:137:99:4347,334,0
15    93255526    rs35663415    T    C    1639.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.63;MQ0=0;QD=37.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM174B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556424    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1673,126,0
15    93255623    rs35982819    T    C    1862.14    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.645;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=39.99;MQ0=0;MQRankSum=-2.045;QD=27.38;ReadPosRankSum=0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM174B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556424    GT:AD:DP:GQ:PL    1/1:2,66:68:99:1895,121,0
15    93255827    rs1808818    G    A    201.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.34;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM174B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556424    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
15    93467391    rs3826036    C    T    57.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=1.537;QD=9.51;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:3,3:6:87.04:87,0,102
15    93482656    rs3743469    G    A    261.86    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.076;QD=12.47;ReadPosRankSum=-0.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556722    GT:AD:DP:GQ:PL    0/1:9,11:20:99:292,0,314
15    93487854    rs1320819    G    C    137.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=13.7;ReadPosRankSum=0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553323    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,172
15    93496874    rs1371390    C    T    358.89    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.906;QD=19.94;ReadPosRankSum=0.906;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420239    GT:AD:DP:GQ:PL    0/1:7,11:18:99:389,0,222
15    93510603    rs4777755    A    G    667.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=56;Dels=0.0;FS=2.619;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=11.91;ReadPosRankSum=-0.664;SNPEFF_AMINO_ACID_CHANGE=E683;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_93510555_93510743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:28,28:56:99:697,0,951
15    93510828    rs144172255    GT    G    40.77    QDFilter2    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=23;FS=0.0;HRun=14;HaplotypeScore=127.6012;IndelType=D;MQ=57.97;MQ0=0;MQRankSum=0.146;QD=1.77;ReadPosRankSum=2.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:16,6:23:79.80:80,0,199
15    93515439    rs62023144    G    A    369.23    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=21;Dels=0.0;FS=2.969;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=17.58;ReadPosRankSum=-0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:8,13:21:99:399,0,275
15    93521604    rs11074121    A    G    1141.22    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=65;Dels=0.0;FS=3.918;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.199;QD=17.56;ReadPosRankSum=0.007;SNPEFF_AMINO_ACID_CHANGE=Q906;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_93521464_93521613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:23,42:65:99:1171,0,659
15    93521651    rs11074122    T    G    564.98    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.577;DB;DP=36;Dels=0.0;FS=10.136;HRun=5;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.997;QD=15.69;ReadPosRankSum=0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:14,22:36:99:595,0,440
15    93522312    rs2272461    G    A    792.79    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.732;DB;DP=69;Dels=0.0;FS=9.67;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.128;QD=11.33;ReadPosRankSum=-2.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:35,34:69:99:823,0,1139
15    93527843    rs2272458    G    A    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
15    93534933    rs3826035    A    G    149.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=21.36;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:2,5:7:55.52:179,0,56
15    93542000    rs7173849    C    G    77.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.94;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553402    GT:AD:DP:GQ:PL    0/1:3,3:6:93.34:108,0,93
15    93552330    rs12915582    C    T    290.10    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=13.19;ReadPosRankSum=-1.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:12,10:22:99:320,0,397
15    93552656    rs12900461    C    T    95.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=12.0;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    0/1:4,4:8:99:126,0,142
15    93563164    rs57995034    C    CAA    274.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=13;HaplotypeScore=103.6604;IndelType=I;MQ=54.85;MQ0=0;QD=19.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394196    GT:AD:DP:GQ:PL    1/1:3,6:14:31.05:317,31,0
15    93567526    rs28558199    G    A    169.16    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.869;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4396;MQ=59.17;MQ0=0;MQRankSum=-0.394;QD=6.04;ReadPosRankSum=0.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557381    GT:AD:DP:GQ:PL    0/1:19,9:28:99:199,0,690
15    93588030    rs1969589    T    C    83.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556658    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
15    93588309    rs62021480    C    G    237.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.54;QD=15.86;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=A315;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_93586647_93588935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGMA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538818    GT:AD:DP:GQ:PL    0/1:6,9:15:61.07:268,0,61
15    93588336    rs4238485    A    C    560.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.16;SNPEFF_AMINO_ACID_CHANGE=D306E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_93586647_93588935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGMA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538818    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:594,45,0
15    93595116    rs117499128    G    A    77.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.48;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555584    GT:AD:DP:GQ:PL    0/1:2,3:5:32.51:107,0,33
15    93595855    rs1997382    T    C    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329082    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
15    93616283    rs112633977    A    AAGG    529.34    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=22;FS=1.971;HRun=0;HaplotypeScore=69.9427;IndelType=I;MQ=59.94;MQ0=0;MQRankSum=1.162;QD=24.06;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329082    GT:AD:DP:GQ:PL    0/1:12,10:22:99:568,0,487
15    93844518    rs12909353    C    G    493.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-326A13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556538    GT:AD:DP:GQ:PL    1/1:0,16:16:42.10:526,42,0
15    93844616    rs12914371    T    A    904.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.299;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.25;MQ0=0;MQRankSum=1.494;QD=29.17;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-326A13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556538    GT:AD:DP:GQ:PL    1/1:1,30:31:34.02:937,34,0
15    93844762    rs12909691    C    T    614.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=25;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.069;QD=24.57;ReadPosRankSum=0.347;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-326A13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556538    GT:AD:DP:GQ:PL    1/1:1,24:25:23.74:647,24,0
15    93844836    rs34239935    G    A    474.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=36.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-326A13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556538    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:507,39,0
15    93844843    rs12914719    T    A    451.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=37.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-326A13.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556538    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:485,36,0
15    94624369    rs4984357    A    C    898.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.158;DB;DP=50;Dels=0.0;FS=1.308;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.842;QD=17.97;ReadPosRankSum=-0.505;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-3049M7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556357    GT:AD:DP:GQ:PL    0/1:20,30:50:99:929,0,615
15    94624377    rs4984342    T    G    727.95    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.183;QD=16.93;ReadPosRankSum=0.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-3049M7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556357    GT:AD:DP:GQ:PL    0/1:20,23:43:99:758,0,636
15    94624477    rs72649567    G    A    92.61    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.091;DB;DP=18;Dels=0.0;FS=1.913;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=5.14;ReadPosRankSum=-1.902;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CTD-3049M7.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556357    GT:AD:DP:GQ:PL    0/1:11,7:18:99:123,0,365
15    94841284    rs921845    T    C    74.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.39;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543482    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,107
15    94842037    rs9806303    A    G    88.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-0.922;QD=8.88;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    0/1:5,4:10:92.45:119,0,92
15    94858686    rs1655455    G    A    152.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.05;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    0/1:3,5:8:84.84:182,0,85
15    94882509    rs4984382    C    T    719.84    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.459;DB;DP=74;Dels=0.0;FS=2.321;HRun=4;HaplotypeScore=0.9332;MQ=59.69;MQ0=0;MQRankSum=-0.534;QD=9.73;ReadPosRankSum=-0.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    0/1:44,30:74:99:750,0,1468
15    94883599    rs10152496    T    C    173.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.968;QD=12.39;ReadPosRankSum=-1.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    0/1:8,6:14:99:203,0,285
15    94884108    rs8025851    G    C    339.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=0.462;QD=16.17;ReadPosRankSum=-1.883;SNPEFF_AMINO_ACID_CHANGE=V308;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_94884042_94884153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357742    GT:AD:DP:GQ:PL    0/1:9,12:21:99:370,0,200
15    94927237    rs56166130    T    C    137.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=16;Dels=0.0;FS=9.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.007;QD=8.57;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    0/1:10,6:16:99:167,0,356
15    94942040    rs10852210    C    T    95.30    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=19.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:125,0,26
15    94942081    rs7495471    C    T    254.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=18.18;ReadPosRankSum=1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    0/1:6,8:14:99:284,0,208
15    94945031    rs2304296    C    G    712.34    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.381;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.349;QD=22.26;ReadPosRankSum=-1.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555493    GT:AD:DP:GQ:PL    0/1:11,21:32:99:742,0,368
15    94945324    rs6497203    G    A    372.29    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.126;QD=14.89;ReadPosRankSum=0.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555493    GT:AD:DP:GQ:PL    0/1:12,13:25:99:402,0,423
15    94945704    rs7180682    A    G    529.89    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=35;Dels=0.0;FS=1.666;HRun=0;HaplotypeScore=0.8321;MQ=58.67;MQ0=0;MQRankSum=-1.04;QD=15.14;ReadPosRankSum=-0.314;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555493    GT:AD:DP:GQ:PL    0/1:17,18:35:99:560,0,540
15    94945719    rs7178698    G    T    1412.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=R285L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_94945715_94945786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1445,105,0
15    94945882    rs68179993    C    T    202.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.027;QD=14.45;ReadPosRankSum=0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331706    GT:AD:DP:GQ:PL    0/1:7,7:14:99:232,0,233
15    95019834    rs10574224    CAGAT    C    195.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=69.5971;IndelType=D;MQ=61.43;MQ0=0;MQRankSum=0.633;QD=13.06;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357742    GT:AD:DP:GQ:PL    0/1:9,6:15:99:235,0,251
15    97326748    rs12911590    G    T    200.22    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.663;QD=18.2;ReadPosRankSum=0.896;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_15_97326619_97326974;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328504    GT:AD:DP:GQ:PL    0/1:4,7:11:99:230,0,104
15    97634258    rs8032233    G    A    110.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC055873.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401129    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
15    98508736    rs55909216    G    A    498.16    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=4.144;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.381;QD=17.18;ReadPosRankSum=-0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268042    GT:AD:DP:GQ:PL    0/1:13,16:29:99:528,0,373
15    98512431    rs61747226    C    T    888.42    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.949;DB;DP=49;Dels=0.0;FS=1.239;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.817;QD=18.13;ReadPosRankSum=-0.072;SNPEFF_AMINO_ACID_CHANGE=T148M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_98512353_98512609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538249    GT:AD:DP:GQ:PL    0/1:23,26:49:99:918,0,633
15    98980829    rs3935898    A    G    1504.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.97;MQ0=0;QD=28.38;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332908    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1537,123,0
15    98980902    rs34892000    C    T    553.36    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=28.405;MQ=37.22;MQ0=0;QD=19.08;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332908    GT:AD:DP:GQ:PL    1/1:0,29:29:51.14:586,51,0
15    98980910    rs58790202    T    TG    526.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=26;FS=0.0;HRun=1;HaplotypeScore=450.8348;IndelType=I;MQ=35.15;MQ0=0;MQRankSum=1.037;QD=20.25;ReadPosRankSum=-0.382;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332908    GT:AD:DP:GQ:PL    0/1:5,13:26:14.50:565,0,14
15    98980920    rs71146872    A    AT    401.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=363.7163;IndelType=I;MQ=29.0;MQ0=0;MQRankSum=1.156;QD=22.31;ReadPosRankSum=1.542;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332908    GT:AD:DP:GQ:PL    1/1:9,8:18:43.08:444,43,0
15    98995052    rs77262002    G    GT    778.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=91.3126;IndelType=I;MQ=62.65;MQ0=0;QD=38.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332908    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:821,60,0
15    98995081    rs12101356    A    G    775.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.94;MQ0=0;QD=35.27;SNPEFF_AMINO_ACID_CHANGE=S115P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_98995057_98995239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332908    GT:AD:DP:GQ:PL    1/1:0,22:22:63.19:809,63,0
15    99023968    rs4528551    T    G    917.18    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=3.483;DB;DP=54;Dels=0.0;FS=8.513;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.078;QD=16.98;ReadPosRankSum=-0.953;SNPEFF_AMINO_ACID_CHANGE=L15;SNPEFF_CODON_CHANGE=ctA/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99023829_99024006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM169B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332908    GT:AD:DP:GQ:PL    0/1:25,29:54:99:947,0,704
15    99454363    rs2715415    A    G    63.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=15.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:96,9,0
15    99456553    rs951715    G    A    2146.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2180,165,0
15    99465285    rs2684806    C    T    850.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:883,66,0
15    99466969    rs2715429    C    G    151.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=18.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:185,15,0
15    99467930    rs186895929    G    A    476.97    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.358;DB;DP=37;Dels=0.0;FS=13.341;HRun=1;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=-1.14;QD=12.89;ReadPosRankSum=-1.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    0/1:18,19:37:99:507,0,548
15    99467934    rs1464430    A    C    396.35    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.34;DB;DP=35;Dels=0.0;FS=9.834;HRun=0;HaplotypeScore=0.8321;MQ=59.34;MQ0=0;MQRankSum=0.347;QD=11.32;ReadPosRankSum=1.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    0/1:17,18:35:99:426,0,554
15    99472734    rs4486868    T    C    688.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.112;DB;DP=40;Dels=0.0;FS=4.289;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.759;QD=17.21;ReadPosRankSum=-0.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    0/1:16,24:40:99:719,0,482
15    99477911    rs2715449    T    G    164.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
15    99478225    rs2229765    G    A    208.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.424;DB;DP=21;Dels=0.0;FS=1.74;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.733;QD=9.93;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=E1043;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99478053_99478282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    0/1:12,9:21:99:238,0,329
15    99478493    rs10400894    T    C    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
15    99486429    rs41472951    A    G    217.41    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=21.74;ReadPosRankSum=1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    0/1:3,7:10:87.28:247,0,87
15    99492045    rs2684789    G    A    426.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:459,36,0
15    99492061    rs17847195    G    A    341.15    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.113;QD=26.24;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    0/1:3,10:13:85.34:371,0,85
15    99500256    rs2593053    G    A    349.11    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.433;DB;DP=35;Dels=0.0;FS=1.67;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=-1.568;QD=9.97;ReadPosRankSum=0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    0/1:22,12:35:99:379,0,566
15    99509744    rs2037446    G    C    511.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF1R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268035    GT:AD:DP:GQ:PL    1/1:0,18:18:42.10:545,42,0
15    99512940    rs73465778    A    G    676.88    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=46;Dels=0.0;FS=1.339;HRun=0;HaplotypeScore=1.8997;MQ=59.5;MQ0=0;MQRankSum=0.424;QD=14.71;ReadPosRankSum=-1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGPEP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378919    GT:AD:DP:GQ:PL    0/1:19,27:46:99:707,0,562
15    99670265    rs3743244    C    T    1190.48    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.623;DB;DP=79;Dels=0.0;FS=3.006;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.476;QD=15.07;ReadPosRankSum=0.838;SNPEFF_AMINO_ACID_CHANGE=P566L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99672018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1220,0,1166
15    99670400    rs5030692    A    C    707.89    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.311;DB;DP=50;Dels=0.0;FS=1.096;HRun=0;HaplotypeScore=0.6651;MQ=59.63;MQ0=0;MQRankSum=0.359;QD=14.16;ReadPosRankSum=-0.146;SNPEFF_AMINO_ACID_CHANGE=E611A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99672018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:24,26:50:99:738,0,826
15    99670518    rs1670227    T    C    949.17    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.332;DB;DP=62;Dels=0.0;FS=5.137;HRun=1;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=1.308;QD=15.31;ReadPosRankSum=0.686;SNPEFF_AMINO_ACID_CHANGE=T650;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99672018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:28,34:62:99:979,0,853
15    99670989    rs3743248    T    C    513.63    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.88;DB;DP=52;Dels=0.0;FS=8.114;HRun=2;HaplotypeScore=1.8308;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=9.88;ReadPosRankSum=-1.547;SNPEFF_AMINO_ACID_CHANGE=P807;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99672018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:30,22:52:99:544,0,1033
15    99671492    rs5030695    A    G    56.38    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=6.99;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.64;ReadPosRankSum=0.895;SNPEFF_AMINO_ACID_CHANGE=Q975R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99672018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:7,3:10:86.37:86,0,251
15    99671760    rs260087    T    C    250.79    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-1.6;QD=17.91;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=F1064;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99672018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:5,9:14:99:281,0,149
15    99671795    rs5030699    C    T    249    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=2.158;HRun=2;HaplotypeScore=0.8667;MQ=58.83;MQ0=0;MQRankSum=-1.482;QD=15.56;ReadPosRankSum=1.27;SNPEFF_AMINO_ACID_CHANGE=S1076L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99672018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:7,9:16:99:279,0,192
15    99672445    rs142629386    G    A    1587.40    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.384;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9132;MQ=60.0;MQ0=0;MQRankSum=0.342;QD=13.12;ReadPosRankSum=-0.743;SNPEFF_AMINO_ACID_CHANGE=D1293N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99675770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336292    GT:AD:DP:GQ:PL    0/1:65,56:121:99:1617,0,2129
15    99672599    rs7167599    G    C    1307.45    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.707;DB;DP=104;Dels=0.0;FS=1.612;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.279;QD=12.57;ReadPosRankSum=-0.909;SNPEFF_AMINO_ACID_CHANGE=G1344A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99669572_99675770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336292    GT:AD:DP:GQ:PL    0/1:56,48:104:99:1337,0,1864
15    99678145    rs260089    G    A    484.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.831;DB;DP=30;Dels=0.0;FS=5.636;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.445;QD=16.16;ReadPosRankSum=1.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:12,18:30:99:515,0,282
15    99679489    rs34077294    GAGAT    G    826.99    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.479;DB;DP=37;FS=1.624;HRun=0;HaplotypeScore=181.7085;IndelType=D;MQ=54.97;MQ0=0;MQRankSum=-0.482;QD=22.35;ReadPosRankSum=-0.138;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:19,18:37:99:866,0,1275
15    99679655    rs181987    C    A    1079.65    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.582;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.05;MQ0=0;MQRankSum=1.067;QD=14.79;ReadPosRankSum=-0.835;SNPEFF_AMINO_ACID_CHANGE=L387;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99679634_99679672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394130    GT:AD:DP:GQ:PL    0/1:34,39:73:99:1110,0,1210
15    99679830    rs260118    A    G    1292.82    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=3.346;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.464;QD=14.21;ReadPosRankSum=-0.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328642    GT:AD:DP:GQ:PL    0/1:45,46:91:99:1323,0,1391
15    99715352    rs2602016    A    G    194.70    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=22;Dels=0.0;FS=4.593;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.543;QD=8.85;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=L256;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_99715255_99715360;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262074    GT:AD:DP:GQ:PL    0/1:14,8:22:99:225,0,409
15    99798405    rs34471005    C    T    549    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=49;Dels=0.0;FS=2.397;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.071;QD=10.98;ReadPosRankSum=-0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301981    GT:AD:DP:GQ:PL    0/1:28,21:49:99:579,0,832
15    99799138    .    G    C    1313.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.795;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8633;MQ=60.0;MQ0=0;MQRankSum=-0.63;QD=12.16;ReadPosRankSum=0.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301981    GT:AD:DP:GQ:PL    0/1:60,48:108:99:1343,0,1858
15    99799474    rs62023769    C    T    1682.36    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.165;DB;DP=168;Dels=0.0;FS=2.832;HRun=2;HaplotypeScore=0.9867;MQ=59.73;MQ0=0;MQRankSum=1.197;QD=10.01;ReadPosRankSum=0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301981    GT:AD:DP:GQ:PL    0/1:104,64:168:99:1712,0,3132
15    99799750    rs1976589    T    C    3307.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=28.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301981    GT:AD:DP:GQ:PL    1/1:1,115:116:99:3307,277,0
15    99901749    rs3817147    C    G    718.74    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=55;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.182;QD=13.07;ReadPosRankSum=-0.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301981    GT:AD:DP:GQ:PL    0/1:29,26:55:99:749,0,824
15    100214958    rs2033547    A    T    755.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338042    GT:AD:DP:GQ:PL    1/1:0,22:22:66.19:788,66,0
15    100230908    rs325385    T    C    357.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338042    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:391,30,0
15    100243487    rs34131461    GT    G    828.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=6;HaplotypeScore=70.0135;IndelType=D;MQ=61.19;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338042    GT:AD:DP:GQ:PL    1/1:0,27:27:81.20:870,81,0
15    100246718    rs325410    C    T    131.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338042    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
15    100246834    rs325409    T    G    2365.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.62;MQ0=0;QD=38.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338042    GT:AD:DP:GQ:PL    1/1:0,60:61:99:2398,178,0
15    100246936    rs325408    T    C    6241.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=202;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.54;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=N227;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100246934_100247060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449277    GT:AD:DP:GQ:PL    1/1:0,202:202:99:6241,484,0
15    100246942    rs325407    G    A    6759.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=202;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.54;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=Q229;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100246934_100247060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449277    GT:AD:DP:GQ:PL    1/1:0,202:202:99:6760,512,0
15    100251015    rs325403    C    G    923.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022692.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378904    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:956,69,0
15    100252709    .    CCAG    C    169.18    PASS    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=2.866;DP=66;FS=7.546;HRun=0;HaplotypeScore=458.2767;IndelType=D;MQ=57.73;MQ0=0;MQRankSum=1.984;QD=2.56;ReadPosRankSum=-0.976;SNPEFF_AMINO_ACID_CHANGE=Q350-;SNPEFF_CODON_CHANGE=cag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_15_100252595_100256627;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449277    GT:AD:DP:GQ:PL    0/1:57,9:66:99:208,0,651
15    100252805    rs325400    G    T    456.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=30;Dels=0.0;FS=1.455;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.664;QD=15.22;ReadPosRankSum=1.576;SNPEFF_AMINO_ACID_CHANGE=G381;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100252595_100256627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449277    GT:AD:DP:GQ:PL    0/1:15,15:30:99:487,0,440
15    100252892    rs34851361    A    G    480.47    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.925;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.5;MQ0=0;MQRankSum=-1.172;QD=10.44;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=P410;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100252595_100256627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEF2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449277    GT:AD:DP:GQ:PL    0/1:25,21:46:99:510,0,792
15    100256618    rs325380    A    C    1147.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_AMINO_ACID_CHANGE=F129V;SNPEFF_CODON_CHANGE=Ttc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100255908_100258029;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022692.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378904    GT:AD:DP:GQ:PL    1/1:0,33:33:90.28:1180,90,0
15    100269309    rs6598263    T    G    4408.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYSMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450512    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4409,340,0
15    100269680    rs2061007    G    C    3899.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7338;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=A180G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100267614_100269936;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYSMD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332728    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3900,289,0
15    100269796    rs6598264    A    G    2808.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.612;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_AMINO_ACID_CHANGE=S141;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100267614_100269936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LYSMD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332728    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2842,217,0
15    100291628    rs28572291    T    C    54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090825.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408764    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
15    100291929    rs62042315    G    C    463    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.856;DB;DP=45;Dels=0.0;FS=3.219;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.216;QD=10.29;ReadPosRankSum=0.444;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090825.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408764    GT:AD:DP:GQ:PL    0/1:24,21:45:99:493,0,767
15    100292091    rs11636039    C    T    38.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=9.69;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090825.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408764    GT:AD:DP:GQ:PL    0/1:2,2:4:58.47:69,0,58
15    100332799    rs11639102    A    C    588.47    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.829;DB;DP=116;Dels=0.0;FS=2.843;HRun=0;HaplotypeScore=3.3012;MQ=53.33;MQ0=3;MQRankSum=-2.635;QD=5.07;ReadPosRankSum=-0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090825.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408584    GT:AD:DP:GQ:PL    0/1:83,33:116:99:618,0,2612
15    100332807    rs11633999    C    T    646.04    HaplotypeScoreFilter13    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=68.7639;MQ=53.37;MQ0=3;MQRankSum=-1.512;QD=5.43;ReadPosRankSum=-2.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090825.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408584    GT:AD:DP:GQ:PL    0/1:82,36:119:99:676,0,2330
15    100332919    rs2603217    T    C    462.29    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.884;DB;DP=99;Dels=0.0;FS=19.85;HRun=0;HaplotypeScore=0.0;MQ=43.49;MQ0=0;MQRankSum=-2.222;QD=4.67;ReadPosRankSum=-2.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090825.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408584    GT:AD:DP:GQ:PL    0/1:73,26:99:99:492,0,2191
15    100340282    .    T    C    287.16    QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.244;DP=170;Dels=0.0;FS=10.728;HRun=1;HaplotypeScore=1.8455;MQ=55.24;MQ0=2;MQRankSum=-3.521;QD=1.69;ReadPosRankSum=2.258;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNM1P46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341853    GT:AD:DP:GQ:PL    0/1:141,29:170:99:317,0,4363
15    100340296    rs76795743    C    G    313    QDFilter2    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=3.961;DB;DP=173;Dels=0.0;FS=13.262;HRun=1;HaplotypeScore=2.7306;MQ=55.09;MQ0=2;MQRankSum=-6.638;QD=1.81;ReadPosRankSum=-1.232;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DNM1P46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341853    GT:AD:DP:GQ:PL    0/1:137,36:173:99:343,0,4148
15    100514418    rs2581343    C    G    36.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.22;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
15    100514494    rs2581341    T    C    421.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=38.29;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
15    100514525    rs3825894    C    T    480.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=26.67;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,18:18:48.06:513,48,0
15    100514561    rs2581340    G    C    836.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=29.89;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:870,69,0
15    100514614    rs2573652    T    C    1209.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.42;MQ0=0;QD=30.24;SNPEFF_AMINO_ACID_CHANGE=N1094S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100511794_100514767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,40:40:90.30:1243,90,0
15    100533218    rs7175995    C    T    1001.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,31:32:78.23:1035,78,0
15    100537494    rs12900132    C    T    502.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=27.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,18:18:42.12:536,42,0
15    100603776    rs6598297    T    A    848.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378898    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:881,66,0
15    100604126    rs6598298    A    G    252.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:286,21,0
15    100649010    rs72768102    A    T    333.45    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=1.944;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=25.65;ReadPosRankSum=1.944;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:3,10:13:85.51:363,0,86
15    100649248    rs61752832    G    A    549.76    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=43;Dels=0.0;FS=1.529;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.592;QD=12.79;ReadPosRankSum=1.272;SNPEFF_AMINO_ACID_CHANGE=D411;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100649194_100649321;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378898    GT:AD:DP:GQ:PL    0/1:22,20:43:99:580,0,652
15    100672237    rs12907333    T    G    1073.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9454;MQ=57.26;MQ0=0;QD=24.96;SNPEFF_AMINO_ACID_CHANGE=R323;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100672212_100672357;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378898    GT:AD:DP:GQ:PL    1/1:0,42:43:87.24:1106,87,0
15    100692782    rs7162227    C    G    804.58    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=2.454;DB;DP=46;Dels=0.0;FS=10.275;HRun=1;HaplotypeScore=0.9332;MQ=59.5;MQ0=0;MQRankSum=0.268;QD=17.49;ReadPosRankSum=1.316;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:19,27:46:99:835,0,550
15    100692953    rs72755233    G    A    754.30    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=39;Dels=0.0;FS=3.57;HRun=0;HaplotypeScore=0.0;MQ=56.59;MQ0=0;MQRankSum=0.779;QD=19.34;ReadPosRankSum=-0.207;SNPEFF_AMINO_ACID_CHANGE=T203I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100692817_100692967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378898    GT:AD:DP:GQ:PL    0/1:14,24:39:99:784,0,376
15    100693032    rs10664668    C    CTT    305.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=11;HaplotypeScore=48.4296;IndelType=I;MQ=49.81;MQ0=1;QD=25.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:4,8:11:24.08:348,24,0
15    100695347    rs8024690    T    C    285.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.066;QD=13.0;ReadPosRankSum=-1.773;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:11,11:22:99:316,0,347
15    100794172    rs7172834    T    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    100794363    rs4369638    C    T    870.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.06;SNPEFF_AMINO_ACID_CHANGE=K108;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100794341_100794384;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378898    GT:AD:DP:GQ:PL    1/1:0,31:31:69.22:903,69,0
15    100801603    rs4965295    T    C    285.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:319,24,0
15    100801698    rs4965613    G    A    987.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.97;SNPEFF_AMINO_ACID_CHANGE=A339;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100801684_100801841;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1020,75,0
15    100801965    rs6598316    G    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
15    100802395    rs28587707    G    T    214.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;MQRankSum=0.545;QD=15.31;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:7,7:14:99:244,0,207
15    100802427    rs28448376    G    A    382.78    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=4.392;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.461;QD=14.18;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:14,13:27:99:413,0,396
15    100802495    rs4965296    G    A    1040.22    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.076;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9766;MQ=58.44;MQ0=0;MQRankSum=0.635;QD=15.08;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:30,39:69:99:1070,0,902
15    100802499    rs4965297    A    G    2269.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9766;MQ=58.51;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2302,175,0
15    100802766    rs4965298    C    T    86.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
15    100821151    rs7496894    T    C    41.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
15    100821237    rs56388124    G    A    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
15    100821426    rs7496614    G    A    1558.23    PASS    AB=0.398;AC=1;AF=0.50;AN=2;BaseQRankSum=3.192;DB;DP=88;Dels=0.0;FS=9.212;HRun=0;HaplotypeScore=0.0;MQ=57.6;MQ0=0;MQRankSum=1.156;QD=17.71;ReadPosRankSum=1.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:35,53:88:99:1588,0,850
15    100821467    rs7496640    G    A    1205.27    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=69;Dels=0.0;FS=1.094;HRun=0;HaplotypeScore=0.8321;MQ=57.27;MQ0=0;MQRankSum=1.306;QD=17.47;ReadPosRankSum=-0.925;SNPEFF_AMINO_ACID_CHANGE=A252;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100821434_100821606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:27,42:69:99:1235,0,714
15    100821576    rs7496668    G    A    225.45    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.25;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.43;MQ0=0;MQRankSum=1.47;QD=8.67;ReadPosRankSum=-0.028;SNPEFF_AMINO_ACID_CHANGE=S216L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100821434_100821606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:16,10:26:99:255,0,256
15    100821647    rs7497712    T    C    109.81    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=9.15;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268070    GT:AD:DP:GQ:PL    0/1:7,5:12:99:140,0,254
15    100889496    rs2289584    T    G    313.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC015723.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340644    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:346,24,0
15    100890439    rs35809769    G    A    207.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.96;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC015723.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340644    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:241,21,0
15    100942843    rs1023782    G    T    524.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.99;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:558,42,0
15    100942962    rs2439928    T    C    605.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=30.26;SNPEFF_AMINO_ACID_CHANGE=R370G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_100940600_100943070;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    1/1:0,20:20:54.15:638,54,0
15    100995925    rs12050655    A    G    213.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
15    100996038    rs12595207    C    T    1186.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1219,90,0
15    100996395    rs2014940    G    A    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
15    101009474    rs34108242    A    T    563.32    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.539;QD=15.22;ReadPosRankSum=0.982;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    0/1:18,19:37:99:593,0,583
15    101009530    rs12909732    G    A    1327.58    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=70;Dels=0.0;FS=2.778;HRun=1;HaplotypeScore=1.9367;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=18.97;ReadPosRankSum=0.959;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    0/1:29,41:70:99:1358,0,832
15    101013123    rs1566775    G    A    605.28    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=3.469;DB;DP=39;Dels=0.0;FS=3.041;HRun=0;HaplotypeScore=0.9996;MQ=59.41;MQ0=0;MQRankSum=1.459;QD=15.52;ReadPosRankSum=-1.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    0/1:17,22:39:99:635,0,475
15    101019529    rs2654574    C    T    217.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
15    101019793    rs12437474    C    A    206.89    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=58.2;MQ0=0;MQRankSum=-0.437;QD=15.91;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    0/1:5,8:13:99:237,0,176
15    101041896    rs1354332    T    C    209.27    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.226;DB;DP=23;Dels=0.0;FS=1.824;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=9.1;ReadPosRankSum=-2.033;SNPEFF_AMINO_ACID_CHANGE=R53;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101041882_101042055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    0/1:15,8:23:99:239,0,474
15    101042097    rs147295392    CG    C    278.67    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=21;FS=2.098;HRun=1;HaplotypeScore=59.2574;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=-0.76;QD=13.27;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    0/1:11,10:21:99:318,0,468
15    101044032    rs72759164    G    A    288.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.15;MQ0=0;MQRankSum=-0.066;QD=13.11;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284382    GT:AD:DP:GQ:PL    0/1:11,11:22:99:318,0,347
15    101109358    rs28438569    A    G    180.45    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=51.77;MQ0=0;MQRankSum=0.825;QD=10.03;ReadPosRankSum=-1.134;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:7,9:18:34.64:210,0,35
15    101109677    rs8451    C    A    467.29    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.396;DB;DP=60;Dels=0.0;FS=1.108;HRun=0;HaplotypeScore=0.734;MQ=59.3;MQ0=0;MQRankSum=-0.121;QD=7.79;ReadPosRankSum=0.008;SNPEFF_AMINO_ACID_CHANGE=R680S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101107119_101110322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:42,18:60:99:497,0,1449
15    101109794    rs12157    C    G    763.60    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=67;Dels=0.0;FS=9.075;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.24;QD=11.4;ReadPosRankSum=0.473;SNPEFF_AMINO_ACID_CHANGE=E641D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101107119_101110322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:42,25:67:99:794,0,1376
15    101109818    rs12460    G    A    803.32    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=69;Dels=0.0;FS=8.751;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=11.64;ReadPosRankSum=-0.326;SNPEFF_AMINO_ACID_CHANGE=D633;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101107119_101110322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:42,27:69:99:833,0,1268
15    101109893    rs6598356    C    A    980.89    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.151;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.245;QD=14.64;ReadPosRankSum=0.648;SNPEFF_AMINO_ACID_CHANGE=G608;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101107119_101110322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:31,36:67:99:1011,0,978
15    101110265    rs2411836    T    A    549.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=45;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=0.948;QD=12.22;ReadPosRankSum=-1.09;SNPEFF_AMINO_ACID_CHANGE=T484;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101107119_101110322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:25,20:45:99:580,0,845
15    101110302    rs2411837    C    G    519.81    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.337;DB;DP=53;Dels=0.0;FS=5.672;HRun=1;HaplotypeScore=0.8321;MQ=59.13;MQ0=0;MQRankSum=-0.099;QD=9.81;ReadPosRankSum=-1.032;SNPEFF_AMINO_ACID_CHANGE=S472T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101107119_101110322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:30,23:53:99:550,0,991
15    101110356    rs2411838    T    C    394.07    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.089;DB;DP=34;Dels=0.0;FS=6.69;HRun=0;HaplotypeScore=0.0;MQ=57.94;MQ0=0;MQRankSum=0.431;QD=11.59;ReadPosRankSum=-0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:16,18:34:99:424,0,503
15    101110372    rs142607196    AAC    A    514.17    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=4.635;DB;DP=31;FS=4.738;HRun=0;HaplotypeScore=170.8635;IndelType=D;MQ=57.73;MQ0=0;MQRankSum=-0.686;QD=16.59;ReadPosRankSum=-0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:17,14:31:99:553,0,838
15    101111932    rs8024825    A    G    188.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.749;QD=17.14;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:5,6:11:99:219,0,169
15    101112342    rs1493652    T    C    330.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:363,27,0
15    101113862    rs12719734    C    T    1387.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=V406M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101113856_101114446;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1421,105,0
15    101113950    rs12592868    A    G    989.50    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.226;DB;DP=65;Dels=0.0;FS=0.978;HRun=2;HaplotypeScore=0.0;MQ=59.0;MQ0=0;MQRankSum=-0.033;QD=15.22;ReadPosRankSum=2.069;SNPEFF_AMINO_ACID_CHANGE=S376;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101113856_101114446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:31,34:65:99:1019,0,980
15    101114418    rs8039437    G    A    566.61    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=48;Dels=0.0;FS=8.425;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.559;QD=11.8;ReadPosRankSum=0.665;SNPEFF_AMINO_ACID_CHANGE=F220;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101113856_101114446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:27,21:48:99:597,0,805
15    101115159    rs1532765    T    C    611.15    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=45;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.555;QD=13.58;ReadPosRankSum=1.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:23,22:45:99:641,0,791
15    101115448    rs4965678    C    A    124.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
15    101120963    rs11247226    T    C    439.11    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.24;DB;DP=26;Dels=0.0;FS=3.992;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=0.184;QD=16.89;ReadPosRankSum=0.87;SNPEFF_AMINO_ACID_CHANGE=I29V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101120649_101121150;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314742    GT:AD:DP:GQ:PL    0/1:10,16:26:99:469,0,304
15    101152745    rs4965683    A    C    321.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332783    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:354,27,0
15    101169694    rs61752833    A    G    413.53    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.667;DB;DP=38;Dels=0.0;FS=2.862;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.173;QD=10.88;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=A88;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101169642_101170247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332783    GT:AD:DP:GQ:PL    0/1:20,18:38:99:444,0,686
15    101188340    rs4965692    C    G    76.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332783    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
15    101440988    rs4646674    A    C    71.33    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.83;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329841    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:101,0,25
15    101445900    rs3825924    G    A    111.24    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=17;Dels=0.0;FS=2.307;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=-1.133;QD=6.54;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329841    GT:AD:DP:GQ:PL    0/1:12,5:17:99:141,0,364
15    101447588    rs4646684    A    G    306.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.222;QD=17.04;ReadPosRankSum=-0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329841    GT:AD:DP:GQ:PL    0/1:8,10:18:99:337,0,266
15    101448571    rs4646686    T    A    194.55    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.598;DB;DP=24;Dels=0.0;FS=2.172;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=8.11;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329841    GT:AD:DP:GQ:PL    0/1:14,10:24:99:225,0,375
15    101523661    rs11632621    G    C    1642.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1675,129,0
15    101524209    rs7176253    A    G    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:2,3:5:66.50:110,0,66
15    101529118    rs4357923    C    T    275.69    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=29;Dels=0.0;FS=2.965;HRun=1;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=9.51;ReadPosRankSum=1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:17,12:29:99:306,0,484
15    101550858    rs12595297    G    T    2155.23    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=59.8093;MQ=53.68;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2188,178,0
15    101550861    rs11300776    CT    C    426.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.857;DB;DP=75;FS=8.343;HRun=15;HaplotypeScore=678.5095;IndelType=D;MQ=53.52;MQ0=0;MQRankSum=-0.139;QD=5.68;ReadPosRankSum=1.494;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    1/1:31,33:75:8.59:467,9,0
15    101551136    rs878274    C    T    289.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:323,24,0
15    101561896    rs930844    C    G    81.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
15    101562793    rs11247253    G    A    70.39    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.06;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=S683;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101562588_101562802;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,150
15    101566118    rs4427776    C    T    378.96    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.984;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.866;QD=16.48;ReadPosRankSum=-2.047;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525617    GT:AD:DP:GQ:PL    0/1:9,14:23:99:409,0,308
15    101566456    rs1107212    T    C    95.13    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=13.59;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525617    GT:AD:DP:GQ:PL    0/1:3,4:7:99:125,0,102
15    101567547    rs41319544    G    C    236.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=18;Dels=0.0;FS=8.383;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.914;QD=13.14;ReadPosRankSum=0.818;SNPEFF_AMINO_ACID_CHANGE=V826;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101567466_101567586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:9,9:18:99:267,0,206
15    101569467    rs11639307    T    C    193.66    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=16;Dels=0.0;FS=2.757;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=11.39;ReadPosRankSum=-1.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525617    GT:AD:DP:GQ:PL    0/1:6,10:16:99:224,0,137
15    101589019    rs11635234    C    T    68.40    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.68;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:2,3:5:48.23:98,0,48
15    101589765    rs897484    T    G    585.51    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.487;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.227;QD=15.82;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:15,22:37:99:616,0,423
15    101591784    rs13329684    C    T    42.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:72,0,22
15    101591834    rs13329662    G    A    125.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=11.45;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:6,5:11:99:156,0,168
15    101591857    rs11311602    CG    C    377.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=6;HaplotypeScore=87.2082;IndelType=D;MQ=60.67;MQ0=0;QD=23.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    1/1:0,16:16:39.10:419,39,0
15    101592369    rs1531118    C    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
15    101598200    rs11857803    G    A    572.94    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=2.691;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.258;QD=13.97;ReadPosRankSum=-1.014;SNPEFF_AMINO_ACID_CHANGE=P1508;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101598195_101598346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:20,21:41:99:603,0,525
15    101598314    rs11853661    C    T    444.48    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=3.962;DB;DP=28;Dels=0.0;FS=1.576;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;MQRankSum=-0.138;QD=15.87;ReadPosRankSum=1.981;SNPEFF_AMINO_ACID_CHANGE=T103;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101598195_101598346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542170    GT:AD:DP:GQ:PL    0/1:13,15:28:99:474,0,325
15    101601367    .    C    CACTT    911.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.824;DP=24;FS=0.0;HRun=0;HaplotypeScore=87.4347;IndelType=I;MQ=58.05;MQ0=0;MQRankSum=0.406;QD=37.97;ReadPosRankSum=1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:12,12:24:99:950,0,528
15    101601564    rs72766872    A    T    107.50    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.159;QD=11.94;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284395    GT:AD:DP:GQ:PL    0/1:4,5:9:99:137,0,124
15    101717680    rs8024370    G    T    505.34    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.173;QD=9.02;ReadPosRankSum=1.488;SNPEFF_AMINO_ACID_CHANGE=T502;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101717306_101719185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHSY1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543813    GT:AD:DP:GQ:PL    0/1:37,19:56:99:535,0,1062
15    101718927    rs3743193    G    A    599.74    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=48;Dels=0.0;FS=6.185;HRun=0;HaplotypeScore=0.734;MQ=59.13;MQ0=0;MQRankSum=-1.759;QD=12.49;ReadPosRankSum=0.586;SNPEFF_AMINO_ACID_CHANGE=P359S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_101715928_101719185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHSY1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254190    GT:AD:DP:GQ:PL    0/1:25,22:48:99:630,0,792
15    101719380    rs7164068    G    C    91.01    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=18.2;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHSY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254190    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:121,0,25
15    101871941    rs34318939    G    GA    1317.62    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.567;DB;DP=69;FS=0.0;HRun=1;HaplotypeScore=169.5129;IndelType=I;MQ=60.27;MQ0=0;MQRankSum=-1.199;QD=19.1;ReadPosRankSum=-0.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348070    GT:AD:DP:GQ:PL    0/1:33,36:69:99:1357,0,1034
15    101872306    rs2073592    G    A    249.30    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.628;QD=14.66;ReadPosRankSum=-1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348070    GT:AD:DP:GQ:PL    0/1:9,8:17:99:279,0,294
15    101887767    rs2949    C    T    265.40    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.212;QD=16.59;ReadPosRankSum=0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348070    GT:AD:DP:GQ:PL    0/1:7,9:16:99:295,0,225
15    101887794    rs1030    T    C    409.83    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.69;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=17.82;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348070    GT:AD:DP:GQ:PL    0/1:10,13:23:99:440,0,313
15    101888081    rs875293    C    T    94.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.85;MQ0=0;MQRankSum=0.674;QD=6.31;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344273    GT:AD:DP:GQ:PL    0/1:10,5:15:99:125,0,327
15    101929459    rs59311420    G    A    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.66;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    0/1:2,2:4:58.26:69,0,58
15    101929632    rs33912717    ATT    A    388.02    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.052;DB;DP=37;FS=1.624;HRun=12;HaplotypeScore=174.2477;IndelType=D;MQ=59.67;MQ0=0;MQRankSum=0.63;QD=10.49;ReadPosRankSum=0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    0/1:6,16:37:85.06:427,0,85
15    101929825    rs6598460    G    C    811.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:845,63,0
15    101933258    rs4965844    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
15    101933823    rs2277587    A    G    90.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:123,12,0
15    101933825    rs10400857    C    A    90.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:123,12,0
15    101938994    rs62018986    G    A    34.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.7;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    0/1:4,2:6:64.18:64,0,147
15    101970308    rs2643354    G    A    2968.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    1/1:0,76:77:99:3001,223,0
15    101971388    rs2643356    T    C    288.92    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.906;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.986;QD=11.11;ReadPosRankSum=0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331826    GT:AD:DP:GQ:PL    0/1:15,11:26:99:319,0,537
15    101972035    rs2643358    G    A    31.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.31;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344273    GT:AD:DP:GQ:PL    0/1:3,2:5:61.54:62,0,81
15    101984036    rs11855154    C    T    139.46    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.8;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=9.3;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344273    GT:AD:DP:GQ:PL    0/1:9,5:15:99:169,0,207
15    102003207    rs4965386    G    A    133.01    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=14;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.0;MQ=51.43;MQ0=1;MQRankSum=0.811;QD=9.5;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344273    GT:AD:DP:GQ:PL    0/1:8,6:14:99:163,0,197
15    102003209    rs4965387    G    A    149.72    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.0;MQ=49.81;MQ0=1;MQRankSum=-0.811;QD=10.69;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344273    GT:AD:DP:GQ:PL    0/1:8,6:14:99:180,0,193
15    102004231    rs4965874    A    G    121.43    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=13;Dels=0.0;FS=2.43;HRun=2;HaplotypeScore=0.9665;MQ=37.1;MQ0=2;MQRankSum=-0.825;QD=9.34;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344273    GT:AD:DP:GQ:PL    0/1:7,6:13:99:151,0,129
15    102004318    rs28546895    T    G    79.04    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=51.07;MQ0=0;MQRankSum=0.143;QD=7.19;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344273    GT:AD:DP:GQ:PL    0/1:6,5:11:99:109,0,179
15    102004368    rs12911813    G    A    154.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.57;MQ0=0;QD=25.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344273    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:187,15,0
15    102190091    rs568165    T    C    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333018    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
15    102191869    rs672314    G    A    2951.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=37.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333018    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2984,220,0
15    102192034    rs507903    A    G    1914.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=37.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333018    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1947,144,0
15    102192540    rs675436    T    G    623.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.09;SNPEFF_AMINO_ACID_CHANGE=R9;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_102192474_102192570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM2D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333202    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:656,51,0
15    102192548    rs2939587    A    C    519.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=24.76;SNPEFF_AMINO_ACID_CHANGE=L6R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_102192474_102192570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM2D3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333202    GT:AD:DP:GQ:PL    1/1:0,20:21:48.10:553,48,0
15    102195035    rs626073    A    C    223.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333018    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:256,21,0
15    102211654    rs606511    T    C    1504.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333018    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1538,114,0
15    102224601    rs56224006    A    C    81.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333018    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
15    102251993    rs11247320    G    A    275.72    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DB;DP=17;Dels=0.0;FS=6.726;HRun=1;HaplotypeScore=1.6828;MQ=58.63;MQ0=0;MQRankSum=0.635;QD=16.22;ReadPosRankSum=-1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TARSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333018    GT:AD:DP:GQ:PL    0/1:8,9:17:99:306,0,235
15    102287886    .    G    A    85.66    MQFilter40    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.4;MQ0=20;MQRankSum=-0.474;QD=2.76;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,22:31:8.67:115,0,9
15    102291604    rs389380    C    G    135.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.06;MQ0=1;QD=22.66;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:169,15,0
15    102292601    rs2658653    C    G    1046.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.535;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.8;MQ0=0;MQRankSum=-0.743;QD=29.9;ReadPosRankSum=-1.238;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:1,34:35:56.62:1079,57,0
15    102292723    .    A    C    254.39    QDFilter2    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DP=165;Dels=0.0;FS=3.044;HRun=1;HaplotypeScore=1.8606;MQ=47.02;MQ0=1;MQRankSum=-8.314;QD=1.54;ReadPosRankSum=-3.141;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:127,38:165:99:284,0,3842
15    102292726    .    G    A    277.07    QDFilter2    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DP=162;Dels=0.0;FS=5.662;HRun=1;HaplotypeScore=0.9867;MQ=46.46;MQ0=1;MQRankSum=-8.084;QD=1.71;ReadPosRankSum=-3.104;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:122,40:162:99:307,0,3714
15    102292767    rs113047734    C    T    483.88    MQFilter40    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=2.413;DB;DP=217;Dels=0.0;FS=10.077;HRun=0;HaplotypeScore=3.6934;MQ=36.29;MQ0=36;MQRankSum=-4.773;QD=2.23;ReadPosRankSum=4.988;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:160,55:217:99:514,0,2934
15    102292820    .    G    C    81.37    MQFilter40;QDFilter2    AB=0.905;AC=1;AF=0.50;AN=2;BaseQRankSum=2.345;DP=220;DS;Dels=0.0;FS=3.823;HRun=1;HaplotypeScore=4.4034;MQ=20.47;MQ0=105;MQRankSum=0.223;QD=0.37;ReadPosRankSum=-3.004;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:199,21:220:99:111,0,1381
15    102292839    rs62026971    C    A    769.57    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.028;DB;DP=210;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8747;MQ=15.62;MQ0=113;MQRankSum=6.66;QD=3.66;ReadPosRankSum=-2.828;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:159,50:210:13.14:802,13,0
15    102292892    rs78492423    A    C    157.50    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9077;MQ=8.46;MQ0=52;MQRankSum=2.429;QD=2.16;ReadPosRankSum=-2.007;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:61,12:73:21:190,21,0
15    102293002    .    G    C    266.45    MQFilter40;QDFilter2    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.352;DP=180;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4709;MQ=11.76;MQ0=97;MQRankSum=3.429;QD=1.48;ReadPosRankSum=0.879;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:116,64:180:7.41:296,0,7
15    102293038    .    C    G    233.62    MQFilter40;QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DP=250;DS;Dels=0.0;FS=6.421;HRun=1;HaplotypeScore=0.0;MQ=9.86;MQ0=163;MQRankSum=1.94;QD=0.93;ReadPosRankSum=0.082;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:182,67:250:82.98:264,0,83
15    102293084    .    T    C    117.15    MQFilter40;QDFilter2    AB=0.9;AC=1;AF=0.50;AN=2;BaseQRankSum=1.523;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=7.49;MQ0=200;MQRankSum=0.053;QD=0.47;ReadPosRankSum=1.246;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:225,25:250:99:147,0,142
15    102294169    .    G    A    143.54    MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.401;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=12.86;MQ0=31;MQRankSum=-0.401;QD=3.19;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:26,19:45:0.68:172,0,1
15    102294715    .    C    T    984.30    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.478;DP=250;DS;Dels=0.0;FS=5.456;HRun=0;HaplotypeScore=1.7206;MQ=13.35;MQ0=152;MQRankSum=5.853;QD=3.94;ReadPosRankSum=0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:192,58:250:28.38:1017,28,0
15    102294828    .    C    G    46.77    MQFilter40    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=13.91;MQ0=9;MQRankSum=0.0;QD=3.12;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:2,13:15:20.48:77,0,20
15    102294916    .    A    G    50.96    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.04;MQ0=1;QD=10.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:83,9,0
15    102295820    .    G    C    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.448;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=7.43;MQ0=120;MQRankSum=1.448;QD=0.27;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:121,11:132:6.02:67,6,0
15    102295832    .    G    C    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.29;DP=142;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1623;MQ=7.21;MQ0=129;MQRankSum=1.448;QD=0.25;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:131,11:142:6.02:67,6,0
15    102295839    .    C    A    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=7.04;MQ0=136;MQRankSum=2.073;QD=0.24;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:138,11:149:6.02:67,6,0
15    102295873    .    TCTC    T    237.94    QDFilter2    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=89.4808;IndelType=D;MQ=5.02;MQ0=172;QD=1.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:174,7:5:15.05:280,15,0
15    102296079    .    G    C    251.16    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.979;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=10.28;MQ0=85;MQRankSum=2.807;QD=2.51;ReadPosRankSum=-2.938;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:89,11:100:27.04:284,27,0
15    102296086    rs151047229    C    A    419.55    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.423;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.09;MQ0=72;MQRankSum=2.646;QD=4.51;ReadPosRankSum=-2.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:74,18:93:39.09:453,39,0
15    102296120    rs138462043    C    T    1186.50    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.257;DB;DP=56;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=3.8891;MQ=27.7;MQ0=12;MQRankSum=2.421;QD=21.19;ReadPosRankSum=2.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:15,41:56:99:1220,105,0
15    102296215    .    G    A    99.41    MQFilter40;QDFilter2    AB=0.968;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DP=247;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=6.26;MQ0=222;MQRankSum=2.028;QD=0.4;ReadPosRankSum=2.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:239,8:247:99:129,0,137
15    102296231    .    C    T    49.25    MQFilter40;QDFilter2    AB=0.901;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DP=243;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=5.45;MQ0=228;MQRankSum=1.067;QD=0.2;ReadPosRankSum=2.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    0/1:218,24:243:79.24:79,0,113
15    102296265    .    A    C    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.754;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=3.27;MQ0=243;MQRankSum=1.754;QD=0.14;ReadPosRankSum=-1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:245,4:250:6.02:67,6,0
15    102296272    .    C    A    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=3.27;MQ0=243;MQRankSum=0.742;QD=0.14;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:225,23:250:6.02:67,6,0
15    102296488    .    G    C    33.74    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=229;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=2.84;MQ0=225;QD=0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:65,136:229:6.02:65,6,0
15    102296565    .    G    A    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=181;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=3.4;MQ0=174;MQRankSum=1.495;QD=0.2;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426730    GT:AD:DP:GQ:PL    1/1:179,2:181:6.02:67,6,0
15    102299886    .    C    CG    1109.82    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DP=105;DS;FS=1.782;HRun=1;HaplotypeScore=521.337;IndelType=I;MQ=16.63;MQ0=120;MQRankSum=1.088;QD=4.44;ReadPosRankSum=-0.904;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413770    GT:AD:DP:GQ:PL    0/1:178,72:105:99:1149,0,1915
15    102303172    rs74595601    C    T    82.89    MQFilter40;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.44;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.3609;MQ=13.98;MQ0=123;MQRankSum=1.735;QD=0.33;ReadPosRankSum=-0.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:222,27:250:99:113,0,333
15    102303232    .    C    T    271.91    MQFilter40;QDFilter2    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.928;DP=250;DS;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.9578;MQ=10.99;MQ0=159;MQRankSum=-0.484;QD=1.09;ReadPosRankSum=1.945;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:163,86:250:99:302,0,317
15    102303271    rs4965964    C    T    426.13    MQFilter40;QDFilter2    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.402;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6884;MQ=16.32;MQ0=136;MQRankSum=-0.21;QD=1.7;ReadPosRankSum=-1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:153,82:250:99:456,0,756
15    102303399    rs71416239    C    T    1741.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2592;MQ=20.43;MQ0=25;QD=11.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    1/1:0,147:149:99:1774,183,0
15    102303423    rs71409354    A    G    1083.13    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.491;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5518;MQ=21.31;MQ0=24;MQRankSum=1.577;QD=11.52;ReadPosRankSum=-0.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    1/1:1,93:94:99:1116,102,0
15    102303449    .    A    C    219.72    MQFilter40    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.438;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8807;MQ=21.81;MQ0=28;MQRankSum=0.936;QD=2.53;ReadPosRankSum=-0.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:58,28:86:99:250,0,503
15    102303468    .    G    T    147.18    MQFilter40;QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.193;DP=101;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=19.71;MQ0=43;MQRankSum=1.501;QD=1.46;ReadPosRankSum=-0.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:85,16:101:99:177,0,722
15    102303495    rs71416241    C    A    260.77    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.281;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.242;DB;DP=122;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=21.4385;MQ=14.93;MQ0=77;MQRankSum=0.998;QD=2.14;ReadPosRankSum=-1.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:34,87:122:99:291,0,390
15    102303499    .    C    T    53.16    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.95;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.945;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=21.4385;MQ=13.54;MQ0=97;MQRankSum=0.371;QD=0.38;ReadPosRankSum=-0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:132,7:139:83.16:83,0,622
15    102303503    rs71416242    T    C    453.86    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.781;DB;DP=158;Dels=0.0;FS=6.368;HRun=0;HaplotypeScore=23.9695;MQ=12.1;MQ0=117;MQRankSum=1.074;QD=2.87;ReadPosRankSum=2.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:125,33:158:99:484,0,133
15    102303526    .    A    G    281.80    MQFilter40;QDFilter2    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=1.538;DP=232;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=3.9933;MQ=8.19;MQ0=200;MQRankSum=1.032;QD=1.21;ReadPosRankSum=-2.783;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:200,32:232:99:312,0,151
15    102303533    .    A    C    179.83    MQFilter40;QDFilter2    AB=0.931;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.348;DP=250;DS;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=8.3155;MQ=7.22;MQ0=220;MQRankSum=0.502;QD=0.72;ReadPosRankSum=-1.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448059    GT:AD:DP:GQ:PL    0/1:229,17:250:99:210,0,160
15    102304296    .    A    C    42.73    MQFilter40;QDFilter2    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DP=240;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.0146;MQ=4.93;MQ0=210;MQRankSum=1.358;QD=0.18;ReadPosRankSum=0.136;SNPEFF_AMINO_ACID_CHANGE=E115A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_102304051_102304336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:149,91:240:72.72:73,0,110
15    102304305    .    G    C    76.73    MQFilter40;QDFilter2    AB=0.976;AC=1;AF=0.50;AN=2;BaseQRankSum=3.18;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.6486;MQ=5.36;MQ0=216;MQRankSum=3.18;QD=0.31;ReadPosRankSum=0.08;SNPEFF_AMINO_ACID_CHANGE=R118P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_102304051_102304336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:244,6:250:99:107,0,103
15    102304498    .    G    A    779.28    MQFilter40    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DP=250;DS;Dels=0.0;FS=8.334;HRun=0;HaplotypeScore=2.521;MQ=12.39;MQ0=144;MQRankSum=0.831;QD=3.12;ReadPosRankSum=2.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:118,132:250:99:809,0,924
15    102304515    rs111318154    G    A    387.03    MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=214;DS;Dels=0.0;FS=2.128;HRun=0;HaplotypeScore=6.766;MQ=14.29;MQ0=101;MQRankSum=1.563;QD=1.81;ReadPosRankSum=-1.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:172,42:214:99:417,0,1448
15    102304579    rs7169206    G    C    325.37    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.358;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=166;DS;Dels=0.0;FS=40.804;HRun=1;HaplotypeScore=13.1787;MQ=14.45;MQ0=83;MQRankSum=2.254;QD=1.96;ReadPosRankSum=0.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:59,106:166:99:355,0,562
15    102304631    .    C    T    371.41    HaplotypeScoreFilter13;MQFilter40    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DP=110;Dels=0.0;FS=9.947;HRun=1;HaplotypeScore=27.2898;MQ=16.27;MQ0=43;MQRankSum=3.97;QD=3.38;ReadPosRankSum=0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:85,25:110:99:401,0,425
15    102304638    rs137881065    C    T    106.71    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=0.875;DB;DP=111;Dels=0.0;FS=2.637;HRun=0;HaplotypeScore=21.2622;MQ=16.18;MQ0=42;MQRankSum=0.687;QD=0.96;ReadPosRankSum=1.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:94,17:111:99:137,0,658
15    102304643    rs78414495    G    C    411.01    HaplotypeScoreFilter13;MQFilter40    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=3.079;DB;DP=108;Dels=0.0;FS=11.729;HRun=0;HaplotypeScore=18.4334;MQ=15.89;MQ0=42;MQRankSum=3.388;QD=3.81;ReadPosRankSum=1.957;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:78,29:108:99:441,0,294
15    102304650    rs7169244    G    A    936.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.787;MQ=15.93;MQ0=39;QD=8.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    1/1:1,104:105:96.13:970,96,0
15    102304728    rs7169413    G    C    98.55    MQFilter40;QDFilter2    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=207;Dels=0.0;FS=7.537;HRun=1;HaplotypeScore=2.5712;MQ=30.08;MQ0=39;MQRankSum=-6.964;QD=0.48;ReadPosRankSum=6.367;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:158,49:207:99:129,0,3072
15    102304740    rs7169420    G    C    87.92    MQFilter40;QDFilter2    AB=0.751;AC=1;AF=0.50;AN=2;BaseQRankSum=4.283;DB;DP=198;Dels=0.0;FS=7.458;HRun=1;HaplotypeScore=2.7692;MQ=32.0;MQ0=29;MQRankSum=-7.474;QD=0.44;ReadPosRankSum=1.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:148,49:198:99:118,0,3215
15    102304758    rs2943085    C    G    1967.84    MQFilter40    AB=0.601;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=188;Dels=0.0;FS=28.678;HRun=1;HaplotypeScore=0.9578;MQ=33.86;MQ0=21;MQRankSum=6.331;QD=10.47;ReadPosRankSum=5.396;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:113,75:188:99:1998,0,1550
15    102304770    rs62026988    C    T    589.32    MQFilter40    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=2.286;DB;DP=163;Dels=0.0;FS=33.328;HRun=0;HaplotypeScore=2.9783;MQ=34.87;MQ0=14;MQRankSum=-1.344;QD=3.62;ReadPosRankSum=-0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    0/1:114,49:163:99:619,0,2405
15    102304823    rs2943084    T    C    2901.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=43.67;MQ0=2;QD=27.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    1/1:1,105:107:99:2935,241,0
15    102305129    rs2456491    T    C    571.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.77;MQ0=0;QD=27.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC107977.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455423    GT:AD:DP:GQ:PL    1/1:0,21:21:45.14:605,45,0
15    102312130    .    C    A    717.77    MQFilter40    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=2.339;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.04;MQ0=8;MQRankSum=-0.496;QD=7.89;ReadPosRankSum=-0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC107977.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488309    GT:AD:DP:GQ:PL    0/1:50,41:91:99:748,0,824
15    102312315    rs79507447    GA    G    229.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=39.741;IndelType=D;MQ=28.36;MQ0=3;QD=11.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC107977.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488309    GT:AD:DP:GQ:PL    1/1:0,20:7:21.07:272,21,0
15    102369183    rs8037368    A    G    1823.86    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.137;DB;DP=156;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9916;MQ=59.45;MQ0=0;MQRankSum=-0.367;QD=11.69;ReadPosRankSum=-0.309;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4F14P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355745    GT:AD:DP:GQ:PL    0/1:90,66:156:99:1854,0,2862
15    102388991    rs34449200    C    T    1451.66    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.043;DB;DP=124;Dels=0.0;FS=4.344;HRun=1;HaplotypeScore=2.9165;MQ=60.0;MQ0=0;MQRankSum=-0.568;QD=11.71;ReadPosRankSum=-1.895;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR4F13P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428478    GT:AD:DP:GQ:PL    0/1:66,58:124:99:1482,0,1997
15    102416096    rs72763630    T    C    272.67    MQFilter40    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.281;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=27.31;MQ0=19;MQRankSum=-0.58;QD=5.24;ReadPosRankSum=0.505;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC107977.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536946    GT:AD:DP:GQ:PL    0/1:38,14:52:99:303,0,602
15    102416331    .    A    G    290.60    MQFilter40;QDFilter2    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DP=246;DS;Dels=0.0;FS=8.759;HRun=0;HaplotypeScore=2.0234;MQ=12.54;MQ0=96;MQRankSum=-0.025;QD=1.18;ReadPosRankSum=0.616;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC107977.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536946    GT:AD:DP:GQ:PL    0/1:170,76:246:99:321,0,461
15    102416490    rs150205630    T    C    870.97    MQFilter40    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.276;DB;DP=235;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1232;MQ=18.59;MQ0=40;MQRankSum=0.273;QD=3.71;ReadPosRankSum=-0.667;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC107977.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536946    GT:AD:DP:GQ:PL    0/1:143,92:235:99:901,0,1304
15    102463408    rs145297176    T    A    59.63    MQFilter40    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=20;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=18.4;MQ0=13;MQRankSum=-0.937;QD=2.98;ReadPosRankSum=-1.754;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4F4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326183    GT:AD:DP:GQ:PL    0/1:13,7:20:74.31:90,0,74
15    102506389    rs11858570    C    T    48.55    MQFilter40;QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.325;DB;DP=36;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.9983;MQ=21.77;MQ0=9;MQRankSum=0.917;QD=1.35;ReadPosRankSum=0.034;SNPEFF_AMINO_ACID_CHANGE=Q38*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_15_102506278_102506430;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH3P;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000378819    GT:AD:DP:GQ:PL    0/1:30,5:36:78.54:79,0,334
15    102515282    .    G    A    38.57    MQFilter40;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=0.503;DP=32;Dels=0.0;FS=6.41;HRun=0;HaplotypeScore=0.0;MQ=29.44;MQ0=8;MQRankSum=0.271;QD=1.21;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=R368H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_15_102515216_102515368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH3P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398121    GT:AD:DP:GQ:PL    0/1:27,5:32:68.56:69,0,333
15    102516242    .    C    G    66.30    MQFilter40;QDFilter2    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.6219;MQ=23.18;MQ0=2;MQRankSum=-1.094;QD=1.66;ReadPosRankSum=-0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11L9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515173    GT:AD:DP:GQ:PL    0/1:29,11:40:96.29:96,0,503
15    102516492    rs17157198    C    G    462.96    MQFilter40    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.243;DB;DP=92;Dels=0.0;FS=2.835;HRun=0;HaplotypeScore=0.0;MQ=24.28;MQ0=11;MQRankSum=0.35;QD=5.03;ReadPosRankSum=-1.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX11L9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515173    GT:AD:DP:GQ:PL    0/1:61,31:92:99:493,0,902
16    64341    .    G    GC    303.65    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=2;HaplotypeScore=15.584;IndelType=I;MQ=40.37;MQ0=1;QD=33.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483390    GT:AD:DP:GQ:PL    1/1:1,8:8:24.08:346,24,0
16    64458    rs12444477    G    A    265.68    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.74;MQ0=5;QD=18.98;SNPEFF_AMINO_ACID_CHANGE=R453C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_64043_64511;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326592    GT:AD:DP:GQ:PL    1/1:4,10:14:24.05:299,24,0
16    64637    .    G    A    30.76    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.13;MQ0=44;QD=0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483390    GT:AD:DP:GQ:PL    1/1:35,12:47:6:62,6,0
16    65561    .    G    C    94.24    MQFilter40    AC=2;AF=1.00;AN=2;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.35;MQ0=12;QD=5.54;SNPEFF_AMINO_ACID_CHANGE=A385G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_65481_65633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326592    GT:AD:DP:GQ:PL    1/1:9,8:17:11.99:127,12,0
16    67058    rs181746417    A    G    169.70    MQFilter40;QDFilter2    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.154;DB;DP=89;Dels=0.0;FS=5.393;HRun=2;HaplotypeScore=0.8941;MQ=27.55;MQ0=5;MQRankSum=-0.133;QD=1.91;ReadPosRankSum=-2.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494585    GT:AD:DP:GQ:PL    0/1:68,21:89:99:200,0,910
16    67832    rs145341953    A    G    113.09    MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=4.212;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6158;MQ=26.31;MQ0=21;MQRankSum=-3.007;QD=1.15;ReadPosRankSum=1.846;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326592    GT:AD:DP:GQ:PL    0/1:68,30:98:99:143,0,996
16    68977    rs147678346    C    A    210.58    MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=46;Dels=0.0;FS=2.707;HRun=0;HaplotypeScore=0.8321;MQ=19.07;MQ0=5;MQRankSum=0.179;QD=4.58;ReadPosRankSum=1.086;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462860    GT:AD:DP:GQ:PL    0/1:32,14:46:99:241,0,506
16    68995    rs142430828    T    A    172.50    MQFilter40    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.275;DB;DP=34;Dels=0.0;FS=4.393;HRun=1;HaplotypeScore=1.7552;MQ=18.71;MQ0=4;MQRankSum=0.995;QD=5.07;ReadPosRankSum=0.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462860    GT:AD:DP:GQ:PL    0/1:21,13:34:99:202,0,298
16    79609    rs80001234    C    G    152.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.52;MQ0=1;QD=25.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=WASIR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329244    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:185,15,0
16    79811    rs57625436    T    C    201.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.28;MQ0=6;QD=15.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=WASIR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329244    GT:AD:DP:GQ:PL    1/1:0,13:13:21.06:234,21,0
16    81639    rs118023239    C    A    80.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.92;MQ0=3;QD=11.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=IL9RP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442856    GT:AD:DP:GQ:PL    1/1:0,7:7:12:113,12,0
16    81779    rs141542623    G    T    635.87    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=125;Dels=0.0;FS=14.955;HRun=1;HaplotypeScore=5.3137;MQ=40.22;MQ0=1;MQRankSum=-0.431;QD=5.09;ReadPosRankSum=0.351;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=IL9RP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442856    GT:AD:DP:GQ:PL    0/1:92,33:125:99:666,0,2402
16    103423    rs2541593    C    A    742.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=57.53;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:0,24:24:63.17:776,63,0
16    103449    rs78456807    C    CG    1470.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=1;HaplotypeScore=240.7024;IndelType=I;MQ=57.27;MQ0=0;QD=42.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1513,102,0
16    103517    rs183360    A    C    1657.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.75;MQ0=0;QD=28.09;SNPEFF_AMINO_ACID_CHANGE=S24A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_103476_103628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3K;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293860    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1690,132,0
16    103923    rs2562145    C    G    99.01    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=16.5;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    0/1:1,5:6:26.72:129,0,27
16    105320    rs216596    A    G    784.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:0,25:25:69.18:818,69,0
16    105325    rs2858042    G    A    1021.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=35.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1055,78,0
16    105444    rs2541594    C    T    3014.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7262;MQ=58.8;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3048,253,0
16    106777    rs216597    G    C    210.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:244,18,0
16    106952    rs72526673    G    GC    1161.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=1;HaplotypeScore=84.0102;IndelType=I;MQ=59.95;MQ0=0;QD=40.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:1,28:29:81.27:1204,81,0
16    107275    rs1045001    T    G    330.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
16    108585    rs216598    T    C    1811.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=31.23;SNPEFF_AMINO_ACID_CHANGE=S774;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_108058_108758;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1845,150,0
16    108796    rs75176433    T    TG    779.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=39.1672;IndelType=I;MQ=58.89;MQ0=0;QD=37.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338527    GT:AD:DP:GQ:PL    1/1:2,19:21:57.19:821,57,0
16    109671    rs216599    A    G    168.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338527    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:201,18,0
16    110165    rs216600    T    C    1172.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=28.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338527    GT:AD:DP:GQ:PL    1/1:0,41:41:93.28:1206,93,0
16    112151    rs216602    A    G    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=14.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417043    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
16    112376    rs216603    T    C    198.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417043    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
16    112513    rs216604    T    C    1803.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417043    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1837,147,0
16    113493    rs743724    G    C    235.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419764    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:268,21,0
16    113883    rs3056232    G    GCC    245.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=29.4931;IndelType=I;MQ=49.96;MQ0=0;QD=49.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472390    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:287,15,0
16    113886    rs11285099    GC    G    125.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=5;HaplotypeScore=38.4584;IndelType=D;MQ=49.96;MQ0=0;QD=25.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472390    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:168,15,0
16    114535    rs2562147    A    G    135.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472390    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:168,15,0
16    115041    rs2288490    C    T    373.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.193;DB;DP=32;Dels=0.0;FS=7.368;HRun=0;HaplotypeScore=0.0;MQ=58.09;MQ0=0;MQRankSum=-2.32;QD=11.68;ReadPosRankSum=-0.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    0/1:16,16:32:99:404,0,393
16    115072    rs6600227    A    C    229.84    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=23;Dels=0.0;FS=2.643;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=-1.135;QD=9.99;ReadPosRankSum=0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262316    GT:AD:DP:GQ:PL    0/1:14,9:23:99:260,0,441
16    136888    rs743725    T    C    216.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219431    GT:AD:DP:GQ:PL    1/1:0,10:10:21.05:249,21,0
16    138772    rs75244038    A    AG    1390.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=97.7184;IndelType=I;MQ=58.21;MQ0=0;QD=42.14;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_138773_138888;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPRL3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000262313    GT:AD:DP:GQ:PL    1/1:0,33:33:96.32:1433,96,0
16    139636    rs2239299    A    G    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219431    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
16    142825    rs2541618    T    C    84.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473674    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
16    148352    rs2541616    G    A    575.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262313    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:609,45,0
16    150695    rs2256153    C    T    80.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=60.0;MQ0=0;QD=20.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262313    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
16    160668    rs808892    T    C    956.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419636    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:990,78,0
16    162998    rs2541613    G    A    85.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPRL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262313    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
16    213329    rs2885589    A    G    163.65    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=23.38;ReadPosRankSum=0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HBM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472539    GT:AD:DP:GQ:PL    0/1:1,6:7:12.40:194,0,12
16    223706    rs2541640    A    G    69.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482565    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
16    240280    rs1211375    A    C    214.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430864    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
16    242770    rs7185345    A    G    246.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293872    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:280,24,0
16    287078    rs8050592    A    T    69.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301678    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:101,9,0
16    304514    rs3213508    C    T    2334.42    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.1;DB;DP=162;Dels=0.0;FS=2.065;HRun=0;HaplotypeScore=5.4604;MQ=59.57;MQ0=0;MQRankSum=1.891;QD=14.41;ReadPosRankSum=0.501;SNPEFF_AMINO_ACID_CHANGE=N34;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_304387_304680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301678    GT:AD:DP:GQ:PL    0/1:88,74:162:99:2364,0,2612
16    304803    rs7189020    A    T    286.94    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=1.681;QD=17.93;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417499    GT:AD:DP:GQ:PL    0/1:6,10:16:99:317,0,196
16    309720    rs56337617    C    T    709.64    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=4.675;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.07;MQ0=0;MQRankSum=1.285;QD=15.77;ReadPosRankSum=-0.148;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419173    GT:AD:DP:GQ:PL    0/1:21,24:45:99:740,0,637
16    310243    rs56284809    G    A    153.15    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.2;QD=11.78;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419173    GT:AD:DP:GQ:PL    0/1:7,6:13:99:183,0,214
16    312015    .    T    TCCCCAGGCTCACGTCCC    257.93    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=11;FS=0.0;HRun=0;HaplotypeScore=143.273;IndelType=I;MQ=63.26;MQ0=0;MQRankSum=1.749;QD=23.45;ReadPosRankSum=-2.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419173    GT:AD:DP:GQ:PL    0/1:5,1:11:99:297,0,508
16    312253    rs10903013    A    G    122.42    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=7.65;ReadPosRankSum=1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419173    GT:AD:DP:GQ:PL    0/1:11,5:16:99:152,0,362
16    312635    rs11248925    T    C    128.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=12.89;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419173    GT:AD:DP:GQ:PL    0/1:4,6:10:99:159,0,131
16    313202    rs2239738    C    A    424.46    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.716;QD=9.65;ReadPosRankSum=2.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419173    GT:AD:DP:GQ:PL    0/1:27,17:44:99:454,0,761
16    313406    rs7189326    A    G    146.46    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=16;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.766;QD=9.15;ReadPosRankSum=0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419173    GT:AD:DP:GQ:PL    0/1:9,7:16:99:176,0,325
16    313848    rs12325227    C    T    289.01    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=19;Dels=0.0;FS=2.171;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=15.21;ReadPosRankSum=-0.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419173    GT:AD:DP:GQ:PL    0/1:7,12:19:99:319,0,196
16    319511    rs739999    A    G    199.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.994;DB;DP=27;Dels=0.0;FS=1.757;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.97;QD=7.39;ReadPosRankSum=1.347;SNPEFF_AMINO_ACID_CHANGE=M406T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_319502_319584;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316163    GT:AD:DP:GQ:PL    0/1:18,9:27:99:230,0,474
16    319725    rs740000    T    C    41.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301678    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:73,6,0
16    320759    rs9806942    C    T    61.46    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=6.15;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=V330M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_320743_320830;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316163    GT:AD:DP:GQ:PL    0/1:6,4:10:91.45:91,0,148
16    336660    rs11647490    G    A    1150.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_AMINO_ACID_CHANGE=T418;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_336554_336735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDIA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455994    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1183,87,0
16    396264    rs1805105    A    G    705.45    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.544;DB;DP=48;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=2.114;QD=14.7;ReadPosRankSum=-1.268;SNPEFF_AMINO_ACID_CHANGE=D254;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_396148_397106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262320    GT:AD:DP:GQ:PL    0/1:19,28:48:99:735,0,545
16    418429    rs11642334    A    G    931.28    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.057;DB;DP=68;Dels=0.0;FS=0.921;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.019;QD=13.7;ReadPosRankSum=-0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250930    GT:AD:DP:GQ:PL    0/1:37,31:68:99:961,0,1132
16    418462    rs11640313    C    G    791.33    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=66;Dels=0.0;FS=6.768;HRun=1;HaplotypeScore=1.8939;MQ=57.87;MQ0=0;MQRankSum=1.184;QD=11.99;ReadPosRankSum=0.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250930    GT:AD:DP:GQ:PL    0/1:37,29:66:99:821,0,1007
16    419092    rs3830160    A    G    724.15    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.106;DB;DP=57;Dels=0.0;FS=1.116;HRun=0;HaplotypeScore=0.5784;MQ=58.82;MQ0=0;MQRankSum=0.008;QD=12.7;ReadPosRankSum=-1.17;SNPEFF_AMINO_ACID_CHANGE=Y139;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_419068_419220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000199706    GT:AD:DP:GQ:PL    0/1:28,29:57:99:754,0,835
16    419283    rs11434190    A    AG    736.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=54.4427;IndelType=I;MQ=58.95;MQ0=0;QD=33.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250930    GT:AD:DP:GQ:PL    1/1:3,19:22:54.18:778,54,0
16    424403    rs11641325    C    T    67.56    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=5.2;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427313    GT:AD:DP:GQ:PL    0/1:9,4:13:97.56:98,0,222
16    425277    rs11642686    C    T    274.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.47;ReadPosRankSum=-0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427313    GT:AD:DP:GQ:PL    0/1:11,11:22:99:304,0,324
16    425298    rs11648905    G    T    439.08    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.968;DB;DP=24;Dels=0.0;FS=4.481;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.193;QD=18.3;ReadPosRankSum=-0.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427313    GT:AD:DP:GQ:PL    0/1:9,15:24:99:469,0,266
16    426432    rs2071915    T    C    251.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=15;Dels=0.0;FS=9.249;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.53;QD=16.76;ReadPosRankSum=-1.473;SNPEFF_AMINO_ACID_CHANGE=I117V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_426136_426455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250930    GT:AD:DP:GQ:PL    0/1:6,9:15:99:281,0,203
16    426476    rs2071916    T    C    247.79    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.721;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.091;QD=13.04;ReadPosRankSum=0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427313    GT:AD:DP:GQ:PL    0/1:7,12:19:99:278,0,236
16    427013    rs763140    G    C    139.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=16;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=8.75;ReadPosRankSum=-0.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476735    GT:AD:DP:GQ:PL    0/1:10,6:16:99:170,0,279
16    427309    rs763141    G    A    70.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.1;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250930    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:101,0,66
16    427349    rs763142    C    A    50.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=12.57;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250930    GT:AD:DP:GQ:PL    0/1:1,3:4:30.21:80,0,30
16    427479    rs11248931    T    C    34.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.0;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=T136A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_427378_427585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431232    GT:AD:DP:GQ:PL    0/1:3,2:5:61.38:65,0,61
16    427516    rs11649031    T    C    36.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=7.3;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=V123;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_427378_427585;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM8A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431232    GT:AD:DP:GQ:PL    0/1:3,2:5:66.50:67,0,92
16    449162    rs7185254    T    C    424.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219479    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:457,39,0
16    449178    rs2363759    T    G    257.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219479    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:291,24,0
16    449345    rs763151    G    C    2882.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219479    GT:AD:DP:GQ:PL    1/1:0,82:84:99:2916,211,0
16    449554    rs2071914    G    C    525.41    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.352;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=-0.9;QD=12.81;ReadPosRankSum=1.108;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454619    GT:AD:DP:GQ:PL    0/1:20,21:41:99:555,0,698
16    449659    rs14293    G    A    1794.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.48;MQ0=0;QD=32.04;SNPEFF_AMINO_ACID_CHANGE=S120;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_449627_449739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219479    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1827,138,0
16    449934    rs11863625    T    C    120.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.85;MQ0=0;QD=24.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454619    GT:AD:DP:GQ:PL    1/1:0,5:5:15:153,15,0
16    449980    rs28394836    C    T    52.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=48.85;MQ0=0;QD=10.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454619    GT:AD:DP:GQ:PL    1/1:0,5:5:8.99:84,9,0
16    450140    rs35963490    C    CAG    1132.22    PASS    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.462;DB;DP=59;FS=7.738;HRun=0;HaplotypeScore=342.7249;IndelType=I;MQ=58.93;MQ0=0;MQRankSum=-0.988;QD=19.19;ReadPosRankSum=-1.211;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454619    GT:AD:DP:GQ:PL    0/1:37,22:59:99:1171,0,1407
16    450165    rs448063    T    C    1862.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;QD=28.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454619    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1895,141,0
16    450309    rs5841    C    T    1461.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.76;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=D107;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_450219_450746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397722    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1495,114,0
16    455646    rs873477    A    G    492.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.17;SNPEFF_AMINO_ACID_CHANGE=I95V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_455513_455665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DECR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397710    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:525,39,0
16    456239    rs11391097    G    GC    303.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=32.3755;IndelType=I;MQ=48.72;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219481    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:346,24,0
16    456291    rs11391098    G    GC    734.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=4;HaplotypeScore=64.5924;IndelType=I;MQ=54.25;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219481    GT:AD:DP:GQ:PL    1/1:3,18:21:57.19:777,57,0
16    457768    rs78372346    G    C    192.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.19;MQ0=0;QD=24.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461802    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:226,21,0
16    461697    rs4984667    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397710    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
16    539088    rs3830847    T    TAA    238.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=55.5256;IndelType=I;MQ=58.04;MQ0=0;MQRankSum=-0.248;QD=26.54;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262305    GT:AD:DP:GQ:PL    0/1:3,6:9:99:278,0,120
16    570454    rs11863276    T    C    824.26    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.269;DB;DP=52;Dels=0.0;FS=5.655;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.898;QD=15.85;ReadPosRankSum=0.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461009    GT:AD:DP:GQ:PL    0/1:22,30:52:99:854,0,731
16    570557    rs11537754    T    C    1232.26    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.985;DB;DP=109;Dels=0.0;FS=2.529;HRun=1;HaplotypeScore=0.9999;MQ=59.4;MQ0=0;MQRankSum=0.253;QD=11.31;ReadPosRankSum=-0.19;SNPEFF_AMINO_ACID_CHANGE=S409;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_570459_570599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448401    GT:AD:DP:GQ:PL    0/1:56,53:109:99:1262,0,1645
16    570623    rs2071978    G    A    1133.82    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.809;DB;DP=83;Dels=0.0;FS=0.906;HRun=0;HaplotypeScore=1.933;MQ=59.22;MQ0=0;MQRankSum=0.142;QD=13.66;ReadPosRankSum=0.897;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461009    GT:AD:DP:GQ:PL    0/1:42,41:83:99:1164,0,1278
16    601632    rs3213574    T    C    135.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.288;DB;DP=18;Dels=0.0;FS=6.726;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.578;QD=7.51;ReadPosRankSum=1.377;SNPEFF_AMINO_ACID_CHANGE=G771;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_601512_601664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOLH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219611    GT:AD:DP:GQ:PL    0/1:10,8:18:99:165,0,283
16    601914    rs12449064    G    A    34.31    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=3.81;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOLH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219611    GT:AD:DP:GQ:PL    0/1:5,3:9:64.30:64,0,171
16    602595    rs9922777    G    C    65.30    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=9.33;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOLH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219611    GT:AD:DP:GQ:PL    0/1:4,3:7:95.29:95,0,98
16    613147    rs35903260    T    C    58.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.727;QD=9.77;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409413    GT:AD:DP:GQ:PL    1/1:1,4:6:9:91,9,0
16    613168    rs12597975    A    G    117.82    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.736;QD=16.83;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409413    GT:AD:DP:GQ:PL    0/1:2,5:7:22.61:148,0,23
16    614445    rs57546191    C    T    102.70    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=14.67;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409413    GT:AD:DP:GQ:PL    0/1:2,5:7:53.28:133,0,53
16    614821    rs1010761    A    G    70.27    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=14.05;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=R410;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_614674_615528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409413    GT:AD:DP:GQ:PL    0/1:2,3:5:59.95:100,0,60
16    624114    rs2071979    A    G    185.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=11.553;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.792;QD=13.22;ReadPosRankSum=0.201;SNPEFF_AMINO_ACID_CHANGE=T14A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_624066_624763;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000026218    GT:AD:DP:GQ:PL    0/1:7,7:14:99:215,0,211
16    624713    rs4984669    C    T    65.05    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.447;QD=6.51;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=C213;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_624066_624763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000026218    GT:AD:DP:GQ:PL    0/1:6,4:10:95.04:95,0,181
16    628302    rs3752568    A    G    74.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293874    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
16    629006    rs59476302    C    T    95.93    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.731;QD=19.19;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293874    GT:AD:DP:GQ:PL    0/1:1,4:5:20.21:126,0,20
16    630025    rs2071981    C    G    74.86    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=14.97;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409439    GT:AD:DP:GQ:PL    0/1:1,4:5:27.21:105,0,27
16    630089    rs7191939    C    T    398.30    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.53;MQ0=0;MQRankSum=-0.796;QD=20.96;ReadPosRankSum=0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409439    GT:AD:DP:GQ:PL    0/1:7,12:19:99:428,0,198
16    630665    rs1981483    G    A    32.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409439    GT:AD:DP:GQ:PL    0/1:2,2:4:62.96:63,0,66
16    630710    rs1981484    A    G    96.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=10.71;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409439    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,168
16    630902    rs1045274    C    G    1044.67    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.145;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9494;MQ=58.9;MQ0=0;MQRankSum=1.215;QD=13.06;ReadPosRankSum=-0.145;SNPEFF_AMINO_ACID_CHANGE=L45;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_630858_630972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540241    GT:AD:DP:GQ:PL    0/1:39,41:80:99:1075,0,1086
16    632283    rs7187227    G    A    30.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=6.03;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=G523S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_632248_632309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321878    GT:AD:DP:GQ:PL    0/1:3,2:5:60.15:60,0,99
16    632699    rs3743901    C    G    241.28    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.626;QD=17.23;ReadPosRankSum=0.919;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537901    GT:AD:DP:GQ:PL    0/1:4,10:14:99:271,0,124
16    632728    rs3743902    T    C    273.25    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.55;MQ0=0;MQRankSum=0.597;QD=17.08;ReadPosRankSum=1.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537901    GT:AD:DP:GQ:PL    0/1:6,10:16:99:303,0,165
16    632736    rs3743903    T    C    325.72    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.087;QD=18.1;ReadPosRankSum=0.815;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537901    GT:AD:DP:GQ:PL    0/1:7,11:18:99:356,0,224
16    632767    rs3743904    A    G    152.01    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.781;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.45;MQ0=0;MQRankSum=-1.506;QD=5.07;ReadPosRankSum=-0.232;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537901    GT:AD:DP:GQ:PL    0/1:13,16:30:99:182,0,381
16    633125    rs1045277    T    C    951.31    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=72;Dels=0.0;FS=2.317;HRun=2;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;MQRankSum=0.8;QD=13.21;ReadPosRankSum=0.631;SNPEFF_AMINO_ACID_CHANGE=C592R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_632883_634109;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000026218    GT:AD:DP:GQ:PL    0/1:37,35:72:99:981,0,1213
16    633353    rs710924    T    C    413.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.292;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4101;MQ=60.0;MQ0=0;MQRankSum=0.902;QD=9.85;ReadPosRankSum=-0.546;SNPEFF_AMINO_ACID_CHANGE=C668R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_632883_634109;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000026218    GT:AD:DP:GQ:PL    0/1:18,24:42:99:444,0,578
16    633354    rs710925    G    A    426.60    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4101;MQ=60.0;MQ0=0;MQRankSum=-0.302;QD=10.4;ReadPosRankSum=-0.433;SNPEFF_AMINO_ACID_CHANGE=C668Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_632883_634109;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000026218    GT:AD:DP:GQ:PL    0/1:18,23:41:99:457,0,574
16    633706    rs1045283    C    T    82.05    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DB;DP=20;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.5784;MQ=55.21;MQ0=0;MQRankSum=-1.264;QD=4.1;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409527    GT:AD:DP:GQ:PL    0/1:13,7:20:99:112,0,187
16    701839    .    G    A    175.79    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DP=19;Dels=0.0;FS=4.242;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=9.25;ReadPosRankSum=-1.395;SNPEFF_AMINO_ACID_CHANGE=A285T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_701827_702039;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=WDR90;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293879    GT:AD:DP:GQ:PL    0/1:12,7:19:99:206,0,354
16    712127    rs10903018    A    G    151.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=WDR90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548844    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:184,15,0
16    718514    rs7204542    C    G    338.58    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=20;Dels=0.0;FS=2.112;HRun=0;HaplotypeScore=0.8321;MQ=59.06;MQ0=0;MQRankSum=0.986;QD=16.93;ReadPosRankSum=-1.479;SNPEFF_AMINO_ACID_CHANGE=T41;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_718488_718569;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315082    GT:AD:DP:GQ:PL    0/1:6,14:20:99:369,0,143
16    772473    rs149988255    C    T    110.70    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=12.3;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=A208;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_772309_772590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM173A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219535    GT:AD:DP:GQ:PL    0/1:4,5:9:64.51:141,0,65
16    815628    rs1737340    A    G    511.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSLNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293892    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:544,45,0
16    837310    rs531278    A    G    129.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPUSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007264    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:162,12,0
16    839262    rs569951    A    G    78.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.71;SNPEFF_AMINO_ACID_CHANGE=R113;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_839210_839360;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHTF18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262315    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:111,9,0
16    845901    rs2982244    T    C    865.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHTF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440239    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:898,66,0
16    1034834    rs237674    T    C    672.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.583;MQ=58.99;MQ0=0;QD=29.23;SNPEFF_AMINO_ACID_CHANGE=N263;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1034701_1036979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293894    GT:AD:DP:GQ:PL    1/1:0,23:23:57.16:705,57,0
16    1034954    rs11542178    T    C    57.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=15;Dels=0.0;FS=6.421;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.8;QD=3.87;ReadPosRankSum=-1.2;SNPEFF_AMINO_ACID_CHANGE=Y303;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1034701_1036979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293894    GT:AD:DP:GQ:PL    0/1:10,5:15:87.98:88,0,252
16    1129872    rs169068    C    T    847.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.83;SNPEFF_AMINO_ACID_CHANGE=P335L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1128781_1131454;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSTR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293897    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:880,66,0
16    1129912    rs642249    A    G    490.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=P348;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1128781_1131454;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSTR5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293897    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:523,42,0
16    1244877    rs9936834    G    A    600.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=55.8;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:633,48,0
16    1244887    rs3751661    T    A    63.73    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.265;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=56.62;MQ0=0;MQRankSum=1.752;QD=3.03;ReadPosRankSum=0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:15,5:21:93.73:94,0,420
16    1250559    rs8044363    T    C    520.29    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.48;MQ0=0;MQRankSum=-0.301;QD=11.82;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=I369;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1250256_1250571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:23,20:44:99:550,0,735
16    1251562    rs8043905    G    A    140.91    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=12.81;ReadPosRankSum=1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:6,5:11:99:171,0,174
16    1252259    rs9934839    A    G    206.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=R603;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1251663_1252452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
16    1253907    rs4984768    G    T    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
16    1255058    rs8052049    T    G    85.58    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.807;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.979;QD=5.71;ReadPosRankSum=0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:11,4:15:99:116,0,323
16    1257940    rs2738896    T    C    50.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.42;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:2,3:6:51.31:81,0,51
16    1260481    rs8063574    T    C    134.90    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.643;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.337;QD=5.4;ReadPosRankSum=0.092;SNPEFF_AMINO_ACID_CHANGE=D1319;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1260370_1260493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:16,9:25:99:165,0,517
16    1260969    rs61910714    G    A    620.03    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.692;DB;DP=46;Dels=0.0;FS=2.648;HRun=1;HaplotypeScore=1.5616;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=13.48;ReadPosRankSum=1.254;SNPEFF_AMINO_ACID_CHANGE=L1407;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1260787_1260971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:21,25:46:99:650,0,514
16    1261024    rs2738898    C    T    574.09    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=3.572;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=19.8;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:11,18:29:99:604,0,261
16    1261119    rs2738899    G    A    354.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.843;DB;DP=26;Dels=0.0;FS=7.952;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.571;QD=13.65;ReadPosRankSum=-1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:13,13:26:99:385,0,377
16    1261219    rs2753326    A    G    584.35    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.227;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7128;MQ=59.24;MQ0=0;MQRankSum=2.026;QD=9.58;ReadPosRankSum=0.421;SNPEFF_AMINO_ACID_CHANGE=S1425;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1261168_1261294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:34,27:61:99:614,0,997
16    1261222    rs2753325    A    G    575.35    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.181;DB;DP=64;Dels=0.0;FS=1.043;HRun=0;HaplotypeScore=1.7128;MQ=59.28;MQ0=0;MQRankSum=-0.281;QD=8.99;ReadPosRankSum=-0.31;SNPEFF_AMINO_ACID_CHANGE=S1426;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1261168_1261294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:33,31:64:99:605,0,964
16    1261282    rs4984637    T    C    1067.10    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.36;MQ0=0;MQRankSum=-0.391;QD=11.35;ReadPosRankSum=0.437;SNPEFF_AMINO_ACID_CHANGE=I1446;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1261168_1261294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:53,41:94:99:1097,0,1557
16    1261377    rs2738900    G    A    713.07    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.045;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=12.96;ReadPosRankSum=1.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:31,24:55:99:743,0,883
16    1265412    .    G    A    61.10    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.818;QD=6.11;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:7,3:10:91.09:91,0,251
16    1269029    rs2738893    T    C    112.61    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2243;MQ=57.39;MQ0=0;MQRankSum=-1.307;QD=12.51;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=L1977;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1268970_1269130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358590    GT:AD:DP:GQ:PL    0/1:4,5:9:71.48:143,0,71
16    1270162    rs1054645    G    A    164.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.278;QD=13.75;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=R2071H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1269981_1271771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358590    GT:AD:DP:GQ:PL    0/1:4,8:12:99:195,0,118
16    1270349    rs4247094    T    C    167.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=14;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;MQRankSum=1.493;QD=11.99;ReadPosRankSum=-0.811;SNPEFF_AMINO_ACID_CHANGE=D2133;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1269981_1271771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358590    GT:AD:DP:GQ:PL    0/1:6,8:14:99:198,0,143
16    1272038    rs11248860    G    A    325.66    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-1.042;QD=15.51;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=T239I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1271651_1272096;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234798    GT:AD:DP:GQ:PL    0/1:8,13:21:99:356,0,216
16    1272472    rs7198064    C    T    421.20    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=22;Dels=0.0;FS=7.829;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.2;QD=19.15;ReadPosRankSum=-2.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:9,13:22:99:451,0,298
16    1272865    rs4984639    G    A    36.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.03;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1272652_1272917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234798    GT:AD:DP:GQ:PL    0/1:4,2:6:66.19:66,0,115
16    1274412    rs185223629    G    T    30.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.1;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    0/1:3,2:5:60.51:61,0,105
16    1275135    rs9938123    T    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348261    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
16    1278599    rs4360940    A    G    1421.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=46.95;MQ0=0;QD=34.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPSB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339687    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1454,111,0
16    1278609    rs77309587    G    C    586.37    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.012;DB;DP=46;Dels=0.0;FS=1.77;HRun=1;HaplotypeScore=0.0;MQ=45.97;MQ0=0;MQRankSum=-0.407;QD=12.75;ReadPosRankSum=-0.583;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TPSB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339687    GT:AD:DP:GQ:PL    0/1:22,24:46:99:616,0,708
16    1291114    rs28580251    C    G    137.57    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=39.62;MQ0=5;MQRankSum=0.694;QD=7.24;ReadPosRankSum=-2.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338844    GT:AD:DP:GQ:PL    0/1:9,9:19:92.79:168,0,93
16    1291622    rs149113013    A    G    79.44    MQFilter40    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=24;Dels=0.0;FS=8.82;HRun=0;HaplotypeScore=0.0;MQ=33.85;MQ0=5;MQRankSum=1.62;QD=3.31;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=T141A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1291435_1291700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSAB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338844    GT:AD:DP:GQ:PL    0/1:19,5:24:99:109,0,351
16    1306268    rs1969652    C    T    348.77    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.052;DB;DP=28;Dels=0.0;FS=3.741;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=1;MQRankSum=-1.816;QD=12.46;ReadPosRankSum=1.142;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_16_1306134_1306363;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000211076    GT:AD:DP:GQ:PL    0/1:12,16:28:99:379,0,297
16    1306355    rs1800984    T    C    380.40    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.349;DB;DP=28;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.9734;MQ=55.53;MQ0=0;MQRankSum=0.461;QD=13.59;ReadPosRankSum=0.599;SNPEFF_AMINO_ACID_CHANGE=V18A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1306303_1306363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397534    GT:AD:DP:GQ:PL    0/1:13,15:28:99:410,0,362
16    1306377    rs3927397    G    A    337.49    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.96;MQ0=0;MQRankSum=0.775;QD=14.67;ReadPosRankSum=-0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC120498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440800    GT:AD:DP:GQ:PL    0/1:10,13:23:99:367,0,254
16    1306559    rs5815084    AG    A    706.12    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=3.397;DB;DP=36;FS=8.568;HRun=2;HaplotypeScore=100.1144;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.324;QD=19.61;ReadPosRankSum=-0.29;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_1306517_1306688;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSD1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000211076    GT:AD:DP:GQ:PL    0/1:14,22:36:99:745,0,479
16    1306981    rs2272971    G    A    238.04    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.784;DB;DP=19;Dels=0.0;FS=7.521;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.867;QD=12.53;ReadPosRankSum=0.206;SNPEFF_AMINO_ACID_CHANGE=T139;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1306798_1307063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397534    GT:AD:DP:GQ:PL    0/1:11,8:19:99:268,0,375
16    1311222    rs112783753    C    T    83.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=57.39;MQ0=0;MQRankSum=-1.221;QD=9.24;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211076    GT:AD:DP:GQ:PL    0/1:3,6:9:72.37:113,0,72
16    1311333    rs3765436    A    G    221.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.212;QD=14.74;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=L237P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1310953_1311463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC120498.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440800    GT:AD:DP:GQ:PL    0/1:5,10:15:98.55:251,0,99
16    1311513    rs3085832    G    GGGCA    171.73    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=8;FS=10.0;HRun=0;HaplotypeScore=26.5806;IndelType=I;MQ=56.19;MQ0=0;MQRankSum=-0.358;QD=21.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211076    GT:AD:DP:GQ:PL    0/1:3,5:8:87.33:211,0,87
16    1311797    rs753357    G    T    236.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211076    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:269,21,0
16    1312012    rs183064470    G    A    30.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000211076    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:61,0,24
16    1323781    rs1610294    T    C    158.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
16    1358917    rs11644706    A    T    144.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325437    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
16    1358976    rs11645809    T    A    160.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.4;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325437    GT:AD:DP:GQ:PL    1/1:0,12:12:18.03:194,18,0
16    1364140    rs9941160    T    C    852.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=58.13;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325437    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:886,69,0
16    1364281    rs4984806    T    C    1334.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325437    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1367,111,0
16    1365935    rs4984807    C    G    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325437    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
16    1370303    rs909916    T    C    1619.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473256    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1653,126,0
16    1370309    rs909917    C    G    1660.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473256    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1693,141,0
16    1370597    rs4017786    G    C    1285.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=R164S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1370439_1371777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402301    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1319,102,0
16    1370614    rs8063770    C    G    989.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_AMINO_ACID_CHANGE=T170R;SNPEFF_CODON_CHANGE=aCg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1370439_1371777;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402301    GT:AD:DP:GQ:PL    1/1:0,26:26:78.25:1023,78,0
16    1370630    rs8043720    A    G    876.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.11;SNPEFF_AMINO_ACID_CHANGE=P175;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1370439_1371777;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402301    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:909,66,0
16    1370729    rs909918    C    A    77.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473256    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
16    1374513    rs2369700    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402301    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    1374656    rs761060    A    G    1040.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402301    GT:AD:DP:GQ:PL    1/1:0,35:35:93.24:1074,93,0
16    1374818    rs8063    A    G    804.22    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=3.565;DB;DP=44;Dels=0.0;FS=4.019;HRun=0;HaplotypeScore=0.9789;MQ=59.48;MQ0=0;MQRankSum=0.669;QD=18.28;ReadPosRankSum=0.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402301    GT:AD:DP:GQ:PL    0/1:15,29:44:99:834,0,482
16    1379523    rs1811834    T    C    47.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325437    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    1379555    rs1811835    T    C    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325437    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
16    1388888    rs7197416    C    T    794.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324385    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:828,60,0
16    1389153    rs7202563    C    A    147.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=24.6;SNPEFF_AMINO_ACID_CHANGE=P87T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1389114_1389245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397488    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:180,15,0
16    1389629    rs78268478    A    G    288.79    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.127;DB;DP=19;Dels=0.0;FS=1.83;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.127;QD=15.2;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324385    GT:AD:DP:GQ:PL    0/1:7,12:19:99:319,0,159
16    1389709    .    C    T    65.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=8.24;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324385    GT:AD:DP:GQ:PL    0/1:4,4:8:95.88:96,0,119
16    1391132    rs11866635    C    T    505.57    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=34;Dels=0.0;FS=1.393;HRun=0;HaplotypeScore=0.9159;MQ=58.07;MQ0=0;MQRankSum=0.0;QD=14.87;ReadPosRankSum=1.624;SNPEFF_AMINO_ACID_CHANGE=A157;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1391130_1391196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421665    GT:AD:DP:GQ:PL    0/1:15,18:34:99:536,0,413
16    1391221    rs34468534    G    A    297.68    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.958;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=0.301;QD=11.91;ReadPosRankSum=0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324385    GT:AD:DP:GQ:PL    0/1:14,11:25:99:328,0,403
16    1391871    rs2369699    C    G    1907.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=30.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324385    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1940,141,0
16    1392877    rs742458    T    C    392.35    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.214;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5226;MQ=57.29;MQ0=0;MQRankSum=-0.765;QD=15.09;ReadPosRankSum=-0.827;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324385    GT:AD:DP:GQ:PL    0/1:10,16:26:99:422,0,213
16    1394507    rs1132356    A    C    2009.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=D511A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1394470_1394526;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421665    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2043,153,0
16    1394551    rs11248872    A    G    2171.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.952;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.02;MQ0=0;MQRankSum=1.049;QD=30.59;ReadPosRankSum=0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007390    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2205,149,0
16    1394741    rs151251565    AGCCAACAGG    A    1234.40    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=4.117;DB;DP=37;FS=9.259;HRun=0;HaplotypeScore=328.1307;IndelType=D;MQ=50.17;MQ0=0;MQRankSum=-4.35;QD=33.36;ReadPosRankSum=0.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007390    GT:AD:DP:GQ:PL    0/1:21,16:37:99:1273,0,2556
16    1397518    rs79072389    G    GC    183.29    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=19.7779;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=22.91;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007390    GT:AD:DP:GQ:PL    0/1:2,6:8:44.01:222,0,44
16    1397698    rs8055112    G    A    330.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.001;QD=20.67;ReadPosRankSum=-0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007390    GT:AD:DP:GQ:PL    0/1:4,12:16:77.45:361,0,77
16    1398077    rs34766513    C    CCT    1272.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=56.8782;IndelType=I;MQ=59.94;MQ0=0;QD=57.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007390    GT:AD:DP:GQ:PL    1/1:0,21:22:66.23:1315,66,0
16    1400693    rs2294605    C    T    95.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=13.71;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324385    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,102
16    1417375    rs79959864    A    C    36.39    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.28;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNPTG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204679    GT:AD:DP:GQ:PL    0/1:2,3:5:17.66:66,0,18
16    1420487    rs12597285    A    G    40.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248104    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:71,6,0
16    1433766    rs12918814    T    C    293.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.35;SNPEFF_AMINO_ACID_CHANGE=I677V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1433524_1433933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNKL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397462    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:327,27,0
16    1447278    rs61738727    A    G    162.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=S251;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1447179_1447296;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNKL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389221    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
16    1451852    .    G    A    107.47    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=21.49;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301712    GT:AD:DP:GQ:PL    0/1:1,4:5:17.45:137,0,17
16    1455900    rs8044833    C    T    452.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301712    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:486,36,0
16    1464636    rs111437424    A    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_AMINO_ACID_CHANGE=T19;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1464616_1464697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNKL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301712    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    1476465    rs4984834    A    G    241.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=24.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310355    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:275,21,0
16    1478319    rs113339946    C    T    114.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=14.3;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310355    GT:AD:DP:GQ:PL    0/1:4,4:8:99:144,0,121
16    1479072    .    C    CCTGGGCTGTGGGCTCCCTGGGCTATGGGGTCACCTGGCTGTGGGGTCA    532.13    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DP=9;FS=0.0;HRun=0;HaplotypeScore=252.716;IndelType=I;MQ=59.76;MQ0=0;MQRankSum=0.322;QD=59.13;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310355    GT:AD:DP:GQ:PL    0/1:4,1:9:99:571,0,266
16    1484338    rs7192100    A    G    202.44    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=18.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389176    GT:AD:DP:GQ:PL    0/1:3,8:11:91.08:232,0,91
16    1484348    rs7196951    T    G    96.08    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.932;QD=8.01;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389176    GT:AD:DP:GQ:PL    0/1:8,4:12:99:126,0,234
16    1484385    rs78398531    C    A    220.05    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.28;QD=11.58;ReadPosRankSum=0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389176    GT:AD:DP:GQ:PL    0/1:11,8:19:99:250,0,263
16    1484392    rs12598718    G    C    265.09    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.372;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=13.95;ReadPosRankSum=-0.867;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463299    GT:AD:DP:GQ:PL    0/1:8,11:19:99:295,0,249
16    1484473    rs7192331    A    G    425.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.01;SNPEFF_AMINO_ACID_CHANGE=L502P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1484386_1484535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409671    GT:AD:DP:GQ:PL    1/1:0,17:17:33.11:458,33,0
16    1484528    rs61744665    G    A    93.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=13.41;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=R484C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1484386_1484535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409671    GT:AD:DP:GQ:PL    0/1:3,4:7:82.17:124,0,82
16    1486352    rs909974    T    C    36.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.08;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389176    GT:AD:DP:GQ:PL    0/1:2,2:4:61.69:66,0,62
16    1486398    rs6600145    A    G    190.36    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=19.04;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389176    GT:AD:DP:GQ:PL    0/1:2,8:10:53.07:220,0,53
16    1488224    rs4984843    T    C    99.42    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=7.65;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389176    GT:AD:DP:GQ:PL    0/1:8,5:13:99:129,0,259
16    1488646    rs8054054    A    G    76.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.65;SNPEFF_AMINO_ACID_CHANGE=R188;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1488620_1488738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409671    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
16    1489261    rs2050152    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=1.026;QD=12.79;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC154;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389176    GT:AD:DP:GQ:PL    1/1:2,2:4:6.02:82,6,0
16    1493030    rs1883480    C    G    109.29    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=13.66;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:3,5:8:60.15:139,0,60
16    1493098    rs760994    G    A    32.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.77;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:62,0,34
16    1493759    rs12596752    C    T    34.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.59;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:1,2:3:22.53:65,0,23
16    1497137    rs12599176    C    T    42.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    1498520    rs12597739    A    G    120.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=14;Dels=0.0;FS=9.89;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.78;QD=8.64;ReadPosRankSum=-0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:7,7:14:99:151,0,213
16    1503879    rs2235579    T    A    702.38    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.58;MQ0=0;MQRankSum=1.358;QD=11.51;ReadPosRankSum=-0.821;SNPEFF_AMINO_ACID_CHANGE=A332;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1503835_1503895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428756    GT:AD:DP:GQ:PL    0/1:36,25:61:99:732,0,1082
16    1504017    rs4786337    A    G    290.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:323,27,0
16    1504633    rs4265806    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:70,0,28
16    1504934    rs9934018    T    C    115.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.3;QD=16.47;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:3,4:7:84.56:145,0,85
16    1505599    rs7190701    C    T    186.04    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=23.26;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:2,6:8:58.91:216,0,59
16    1506130    rs41286695    C    T    40.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.66;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=A242;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1506114_1506207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428756    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:71,0,31
16    1507276    rs61743590    C    T    335.74    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=2.8;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.67;MQ0=0;MQRankSum=0.048;QD=6.1;ReadPosRankSum=-1.598;SNPEFF_AMINO_ACID_CHANGE=T209;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1507255_1507338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428756    GT:AD:DP:GQ:PL    0/1:39,16:55:99:366,0,1122
16    1507428    .    C    T    183.55    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.89;MQ0=0;MQRankSum=0.742;QD=22.94;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:1,7:8:15.91:213,0,16
16    1507629    rs116970554    C    T    65.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.406;QD=10.94;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:3,3:6:95.62:96,0,106
16    1507778    rs9922189    T    C    168.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.069;DB;DP=18;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=9.37;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:9,9:18:99:199,0,253
16    1510284    rs6600148    A    G    127.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=15.88;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:2,6:8:60.23:157,0,60
16    1510567    rs2072950    T    G    197.29    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=12.33;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:9,7:16:99:227,0,251
16    1510800    rs115071340    C    T    269.05    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.598;DB;DP=23;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.157;QD=11.7;ReadPosRankSum=-1.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:9,14:23:99:299,0,294
16    1511552    rs2744994    G    T    172.62    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.578;QD=10.15;ReadPosRankSum=-0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262318    GT:AD:DP:GQ:PL    0/1:8,9:17:99:203,0,284
16    1515503    rs2744997    G    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382745    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
16    1524850    rs3751884    A    G    49.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_AMINO_ACID_CHANGE=P42;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1524835_1525581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382745    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
16    1536372    rs28444604    G    A    285.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=14.26;ReadPosRankSum=0.367;SNPEFF_AMINO_ACID_CHANGE=P330;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1535940_1536580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293922    GT:AD:DP:GQ:PL    0/1:10,10:20:99:315,0,246
16    1536535    rs2745098    C    T    355.57    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5362;MQ=57.66;MQ0=0;MQRankSum=0.391;QD=11.85;ReadPosRankSum=-0.804;SNPEFF_AMINO_ACID_CHANGE=R276K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1535940_1536580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293922    GT:AD:DP:GQ:PL    0/1:16,14:30:99:386,0,477
16    1537839    rs2745101    G    A    953.25    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=3.16;DB;DP=95;Dels=0.0;FS=0.846;HRun=0;HaplotypeScore=3.593;MQ=59.76;MQ0=0;MQRankSum=-0.829;QD=10.03;ReadPosRankSum=-1.4;SNPEFF_AMINO_ACID_CHANGE=R87W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1537317_1537971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293922    GT:AD:DP:GQ:PL    0/1:56,39:95:99:983,0,1501
16    1537926    rs150305846    C    T    1431.45    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=3.49;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=59.23;MQ0=0;MQRankSum=0.257;QD=13.13;ReadPosRankSum=-0.394;SNPEFF_AMINO_ACID_CHANGE=A58T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1537317_1537971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293922    GT:AD:DP:GQ:PL    0/1:58,51:109:99:1461,0,1403
16    1538363    rs1040499    C    A    463.60    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.734;DB;DP=31;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.456;QD=14.95;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=G36C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1538343_1538468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293922    GT:AD:DP:GQ:PL    0/1:14,17:31:99:494,0,405
16    1538433    rs2745102    A    G    355.35    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.014;DB;DP=27;Dels=0.0;FS=14.835;HRun=2;HaplotypeScore=0.7887;MQ=58.44;MQ0=0;MQRankSum=-0.218;QD=13.16;ReadPosRankSum=-1.189;SNPEFF_AMINO_ACID_CHANGE=P12;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1538343_1538468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293922    GT:AD:DP:GQ:PL    0/1:14,13:27:99:385,0,405
16    1538464    rs2745103    C    T    143.08    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.056;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.5;MQ0=0;MQRankSum=1.141;QD=7.53;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=G2E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1538343_1538468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293922    GT:AD:DP:GQ:PL    0/1:12,7:19:99:173,0,340
16    1547220    rs2235630    C    T    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TELO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262319    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
16    1551826    rs72779276    C    G    163.34    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.71;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.839;QD=11.67;ReadPosRankSum=-1.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TELO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262319    GT:AD:DP:GQ:PL    0/1:8,6:14:99:193,0,272
16    1557794    rs12927760    A    T    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361339    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
16    1573810    rs2745176    A    G    654.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361339    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:687,54,0
16    1584618    rs2076438    T    C    166.76    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=17;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.8667;MQ=58.63;MQ0=0;MQRankSum=-0.473;QD=9.81;ReadPosRankSum=-1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:9,8:17:99:197,0,228
16    1584628    rs12446975    G    A    198.46    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=16;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.637;QD=12.4;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:9,7:16:99:228,0,239
16    1604701    rs2272976    T    C    663.92    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=41;Dels=0.0;FS=1.964;HRun=2;HaplotypeScore=0.9332;MQ=58.86;MQ0=0;MQRankSum=-1.742;QD=16.19;ReadPosRankSum=-0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:18,23:41:99:694,0,562
16    1605053    rs12443939    C    T    34.93    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=3.49;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:7,3:10:64.92:65,0,162
16    1608177    rs2235641    A    G    479.51    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=40;Dels=0.0;FS=6.758;HRun=0;HaplotypeScore=1.8308;MQ=59.53;MQ0=0;MQRankSum=-0.313;QD=11.99;ReadPosRankSum=-0.884;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM204;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253934    GT:AD:DP:GQ:PL    0/1:22,18:40:99:510,0,720
16    1614097    rs8048410    A    G    668.81    PASS    AB=0.289;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=39;Dels=0.0;FS=1.493;HRun=0;HaplotypeScore=0.9983;MQ=58.81;MQ0=0;MQRankSum=-0.137;QD=17.15;ReadPosRankSum=-0.687;SNPEFF_AMINO_ACID_CHANGE=S656;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1613998_1614163;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:11,27:39:99:699,0,310
16    1614240    rs11248883    C    G    72.70    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.17;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:103,0,21
16    1616201    rs11648609    C    T    1373.68    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.62;DB;DP=102;Dels=0.0;FS=1.587;HRun=0;HaplotypeScore=2.5096;MQ=59.77;MQ0=0;MQRankSum=0.931;QD=13.47;ReadPosRankSum=-0.083;SNPEFF_AMINO_ACID_CHANGE=R621Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1616162_1616292;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:52,50:102:99:1404,0,1391
16    1621702    rs72481037    C    T    32.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
16    1635908    rs11640303    G    A    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
16    1639793    rs12447357    C    G    225.80    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.065;DB;DP=23;Dels=0.0;FS=7.537;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=9.82;ReadPosRankSum=-0.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:15,8:23:99:256,0,455
16    1642423    rs2273679    C    T    757.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.617;DB;DP=50;Dels=0.0;FS=1.16;HRun=0;HaplotypeScore=1.86;MQ=60.0;MQ0=0;MQRankSum=-0.173;QD=15.16;ReadPosRankSum=-1.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:20,30:50:99:788,0,618
16    1642660    rs112565100    T    C    124.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=10.38;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:6,6:12:99:155,0,206
16    1652614    rs2236269    T    A    306.03    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=19;Dels=0.0;FS=2.629;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.775;QD=16.11;ReadPosRankSum=1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:8,11:19:99:336,0,245
16    1652621    rs59000332    A    G    262.42    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.144;QD=15.44;ReadPosRankSum=1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:8,9:17:99:292,0,253
16    1657284    rs1894649    C    G    632.74    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.121;DB;DP=51;Dels=0.0;FS=3.167;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.576;QD=12.41;ReadPosRankSum=0.859;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_1657121_1657298;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:28,23:51:99:663,0,851
16    1660274    rs1057983    A    G    601.69    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.213;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=58.33;MQ0=0;MQRankSum=0.051;QD=14.33;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT140;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397417    GT:AD:DP:GQ:PL    0/1:19,23:42:99:632,0,528
16    1706435    rs61739874    C    T    164.39    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.833;DB;DP=22;Dels=0.0;FS=4.738;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.493;QD=7.47;ReadPosRankSum=0.423;SNPEFF_AMINO_ACID_CHANGE=D556;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1705878_1706993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAMP1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436138    GT:AD:DP:GQ:PL    0/1:15,7:22:99:194,0,379
16    1716010    rs8058190    A    C    111.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=4.26;HRun=2;HaplotypeScore=0.0;MQ=45.47;MQ0=0;MQRankSum=-1.652;QD=12.34;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRAMP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262317    GT:AD:DP:GQ:PL    0/1:4,5:9:91.24:141,0,91
16    1813523    rs3751828    G    A    35.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=47.12;MQ0=0;MQRankSum=0.736;QD=8.92;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250894    GT:AD:DP:GQ:PL    0/1:2,2:4:17.66:66,0,18
16    1814440    rs2294619    A    G    34.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.82;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=T747A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1814302_1814460;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356010    GT:AD:DP:GQ:PL    0/1:3,2:5:64.09:64,0,108
16    1814964    rs2294621    C    T    322.18    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=17;Dels=0.0;FS=5.528;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=18.95;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250894    GT:AD:DP:GQ:PL    0/1:6,11:17:99:352,0,160
16    1815946    rs2575371    C    T    163.69    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=23.38;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219302    GT:AD:DP:GQ:PL    0/1:1,6:7:17.19:194,0,17
16    1817397    rs2575368    T    G    224.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:257,21,0
16    1817431    rs2575369    C    T    177.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=13.66;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    0/1:7,6:13:99:208,0,232
16    1817754    rs2076427    A    G    393.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:426,33,0
16    1817768    rs2076428    T    G    453.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:486,39,0
16    1817935    rs2076429    A    C    980.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=28.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:0,34:34:75.25:1013,75,0
16    1818152    rs2076430    C    T    88.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=2.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:1,34:35:14.96:121,15,0
16    1818153    rs2437734    T    C    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=2.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:0,36:36:14.95:116,15,0
16    1818503    rs2076431    G    C    77.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.72;SNPEFF_AMINO_ACID_CHANGE=G1249;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1818478_1818627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356010    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
16    1818680    rs2072989    G    C    607.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:640,51,0
16    1819020    rs2076432    A    T    33.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
16    1819021    rs2575330    A    G    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177742    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
16    1820992    rs11890    T    A    656.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=V94;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1820882_1820994;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219302    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:689,54,0
16    1824075    rs1033476    A    G    73.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250894    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
16    1825768    rs2745169    A    C    654.91    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=55.98;MQ0=0;MQRankSum=1.539;QD=9.22;ReadPosRankSum=-1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPSB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301717    GT:AD:DP:GQ:PL    0/1:42,29:71:99:685,0,1240
16    1826377    rs2235636    A    G    74.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307394    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
16    1827836    rs1178432    T    C    341.80    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.893;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=21.36;ReadPosRankSum=-0.718;SNPEFF_AMINO_ACID_CHANGE=S211;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1827748_1827873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPSB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301717    GT:AD:DP:GQ:PL    0/1:4,11:15:99:372,0,119
16    1830551    rs1178434    C    G    180.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=12.87;ReadPosRankSum=0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307394    GT:AD:DP:GQ:PL    0/1:7,7:14:99:210,0,246
16    1830621    rs1178435    T    C    558.80    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.053;QD=18.03;ReadPosRankSum=-0.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307394    GT:AD:DP:GQ:PL    0/1:12,19:31:99:589,0,378
16    1836709    rs2575351    G    C    188.21    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=21;Dels=0.0;FS=7.474;HRun=3;HaplotypeScore=1.9992;MQ=60.0;MQ0=0;MQRankSum=0.794;QD=8.96;ReadPosRankSum=0.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFALS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215539    GT:AD:DP:GQ:PL    0/1:11,10:21:99:218,0,291
16    1836796    rs2235648    C    A    121.23    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.306;DB;DP=22;Dels=0.0;FS=12.555;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.485;QD=5.51;ReadPosRankSum=-0.634;SNPEFF_AMINO_ACID_CHANGE=I58;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1836758_1836956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262302    GT:AD:DP:GQ:PL    0/1:14,8:22:99:151,0,475
16    1837900    rs344358    T    C    863.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFALS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215539    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:897,69,0
16    1838640    rs344359    T    C    411.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=29.41;SNPEFF_AMINO_ACID_CHANGE=P106;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1838570_1839083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543305    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:445,36,0
16    1838703    rs11540961    G    A    203.60    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.409;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.041;QD=10.72;ReadPosRankSum=-0.776;SNPEFF_AMINO_ACID_CHANGE=A127;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1838570_1839083;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543305    GT:AD:DP:GQ:PL    0/1:10,9:19:99:234,0,287
16    1838836    rs1065656    C    G    156    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFALS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215539    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:189,15,0
16    1842209    rs3751893    A    G    268.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.86;SNPEFF_AMINO_ACID_CHANGE=D108;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1840416_1842516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFALS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415638    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:302,24,0
16    1843672    rs3817902    T    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262302    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
16    1859032    rs1625344    C    T    126.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
16    1859150    rs1057071    G    A    737.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:770,60,0
16    1859153    rs1057070    T    C    797.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=37.97;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,21:21:63.18:830,63,0
16    1859432    rs1628812    G    C    521.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.45;MQ0=0;QD=24.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,21:21:48.12:555,48,0
16    1859476    rs1629513    G    A    138.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=13.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,10:10:15.04:171,15,0
16    1859482    rs1629534    A    C    103.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=40.85;MQ0=0;QD=10.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,10:10:12.03:136,12,0
16    1859618    rs2076448    G    A    113.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
16    1859638    rs2076449    T    C    204.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:238,18,0
16    1859730    rs2745199    G    A    917.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,28:28:72.22:950,72,0
16    1859850    rs1742442    A    G    734.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.89;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:768,57,0
16    1870037    rs144480059    TGGGCTGCCTGCTGAGCTGAGG    T    128.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=334.6839;IndelType=D;MQ=53.62;MQ0=0;QD=6.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:16,5:21:15.04:170,15,0
16    1872479    rs238679    A    G    336.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:370,27,0
16    1873087    rs104843    C    A    1141.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=39.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAGH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397353    GT:AD:DP:GQ:PL    1/1:0,29:29:87.28:1174,87,0
16    1902889    rs1617255    T    C    249.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
16    1903934    rs1742421    A    G    196.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:230,18,0
16    1903938    rs1742422    A    G    214.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:247,21,0
16    1904239    rs10500322    T    A    1111.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1144,84,0
16    1904322    rs1742423    G    C    390.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:424,33,0
16    1904811    rs1742426    C    G    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    1904959    rs1742428    A    G    299.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.87;MQ0=0;QD=27.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:332,27,0
16    1905006    rs1742429    C    T    411.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;QD=37.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:445,33,0
16    1905058    rs4786724    A    G    191.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=23.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:224,18,0
16    1905201    rs5006376    G    T    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    1905227    rs5006375    G    A    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    1905231    rs5006374    A    G    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
16    1905278    rs5006373    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    1907652    rs428123    G    A    1086.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=37.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1119,84,0
16    1907701    rs408286    A    C    43.91    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=57.94;MQ0=0;MQRankSum=1.466;QD=0.65;ReadPosRankSum=-0.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:2,65:68:8.98:76,9,0
16    1907702    rs427948    G    A    131.85    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=57.94;MQ0=0;QD=1.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460494    GT:AD:DP:GQ:PL    1/1:0,68:68:18:165,18,0
16    1907946    rs411193    C    T    547.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,16:16:48.10:581,48,0
16    1910219    rs391288    A    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
16    1910373    rs433268    C    G    1450.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1484,108,0
16    1912139    rs380846    T    C    771.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:804,63,0
16    1915570    rs387777    G    A    79.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
16    1915581    rs391546    T    G    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
16    1915583    rs391543    T    G    80.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
16    1917998    rs1742444    T    C    239.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:272,21,0
16    1918125    rs1742446    T    G    1048.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_AMINO_ACID_CHANGE=T18P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1918108_1918186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325962    GT:AD:DP:GQ:PL    1/1:0,34:34:78.25:1081,78,0
16    1927265    rs11863652    C    T    2389.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.29;MQ0=0;MQRankSum=0.153;QD=33.19;ReadPosRankSum=-0.102;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470044    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2423,147,0
16    1961674    rs337285    G    C    817.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.29;SNPEFF_AMINO_ACID_CHANGE=L285V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_1961464_1962206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443547    GT:AD:DP:GQ:PL    1/1:0,27:27:69.18:851,69,0
16    1996015    .    A    AG    116.29    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DP=15;FS=0.0;HRun=5;HaplotypeScore=37.0002;IndelType=I;MQ=58.75;MQ0=0;MQRankSum=-0.133;QD=7.75;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268661    GT:AD:DP:GQ:PL    0/1:10,5:15:99:155,0,248
16    2004718    rs2815301    T    C    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268668    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
16    2011126    rs758335    A    G    1158.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343262    GT:AD:DP:GQ:PL    1/1:0,37:37:93.28:1192,93,0
16    2013314    rs758336    T    C    129.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=16.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268668    GT:AD:DP:GQ:PL    1/1:0,8:8:15.03:162,15,0
16    2014130    rs11643780    C    A    286.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268668    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:320,24,0
16    2014283    rs2286466    A    G    1099.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=30.55;SNPEFF_AMINO_ACID_CHANGE=P25;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2014277_2014357;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533186    GT:AD:DP:GQ:PL    1/1:0,36:36:87.24:1133,87,0
16    2014424    rs403609    C    G    657.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=28.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268668    GT:AD:DP:GQ:PL    1/1:0,23:23:57.16:690,57,0
16    2026442    rs2240690    G    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354249    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
16    2028402    rs8460    A    C    205.24    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.746;DB;DP=27;Dels=0.0;FS=1.603;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.693;QD=7.6;ReadPosRankSum=0.749;SNPEFF_AMINO_ACID_CHANGE=R741;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2028314_2028472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332704    GT:AD:DP:GQ:PL    0/1:16,11:27:99:235,0,510
16    2034661    rs2075812    T    C    238.72    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=14.04;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFER;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248114    GT:AD:DP:GQ:PL    0/1:8,9:17:99:269,0,233
16    2035868    rs1046502    C    T    788.62    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.957;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5027;MQ=59.03;MQ0=0;MQRankSum=0.93;QD=11.77;ReadPosRankSum=0.046;SNPEFF_AMINO_ACID_CHANGE=L153;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2035867_2037746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFER;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248114    GT:AD:DP:GQ:PL    0/1:37,30:67:99:819,0,1137
16    2048826    rs2240691    C    G    50.01    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.467;QD=3.33;ReadPosRankSum=1.09;SNPEFF_AMINO_ACID_CHANGE=A746;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2048703_2048853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF598;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431526    GT:AD:DP:GQ:PL    0/1:11,4:15:80:80,0,339
16    2049003    rs2286468    A    T    31.52    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=5.25;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=C725S;SNPEFF_CODON_CHANGE=Tgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2048966_2049122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF598;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431526    GT:AD:DP:GQ:PL    0/1:4,2:6:61.51:62,0,129
16    2049640    rs2286469    A    G    912.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_AMINO_ACID_CHANGE=M637T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2049497_2050257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF598;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431526    GT:AD:DP:GQ:PL    1/1:0,30:30:72.22:945,72,0
16    2050293    rs3743847    C    G    205.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.804;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.07;MQ0=0;MQRankSum=-1.914;QD=8.23;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF598;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431526    GT:AD:DP:GQ:PL    0/1:15,10:25:99:236,0,506
16    2050346    rs3743846    A    G    61.58    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=11;Dels=0.0;FS=17.482;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=5.6;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF598;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431526    GT:AD:DP:GQ:PL    0/1:5,6:11:91.57:92,0,167
16    2052806    rs55662859    G    A    37.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.23;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF598;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431526    GT:AD:DP:GQ:PL    0/1:4,2:6:67.37:67,0,89
16    2070200    rs11248906    G    C    100.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.29;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=E100Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2069521_2070313;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPW;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329610    GT:AD:DP:GQ:PL    0/1:3,4:7:93.41:130,0,93
16    2070568    rs2286472    A    C    67.65    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=8.46;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=D149A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2070534_2070755;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPW;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329610    GT:AD:DP:GQ:PL    0/1:5,3:8:84.96:98,0,85
16    2087460    rs12447809    G    T    55.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.127;DB;DP=21;Dels=0.0;FS=4.523;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.14;QD=2.63;ReadPosRankSum=-2.279;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219066    GT:AD:DP:GQ:PL    0/1:12,9:21:85.24:85,0,365
16    2087658    rs12445258    A    G    290.19    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.81;MQ=60.0;MQ0=0;MQRankSum=-0.793;QD=9.07;ReadPosRankSum=-0.671;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219066    GT:AD:DP:GQ:PL    0/1:22,10:32:99:320,0,711
16    2087785    rs34165865    T    C    65.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.34;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTHL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219066    GT:AD:DP:GQ:PL    0/1:4,3:7:95.36:95,0,139
16    2105335    rs2516734    C    G    296.55    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.27;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.9434;MQ=53.67;MQ0=0;MQRankSum=2.122;QD=12.89;ReadPosRankSum=-1.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445113    GT:AD:DP:GQ:PL    0/1:11,12:23:99:327,0,226
16    2105400    rs1800720    C    T    853.20    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.333;DB;DP=71;Dels=0.0;FS=1.142;HRun=0;HaplotypeScore=1.7172;MQ=59.35;MQ0=0;MQRankSum=1.211;QD=12.02;ReadPosRankSum=-0.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445113    GT:AD:DP:GQ:PL    0/1:36,35:71:99:883,0,978
16    2110571    rs2074968    C    G    655.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432909    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:688,51,0
16    2111779    rs17135764    T    C    408.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219476    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:442,33,0
16    2115481    rs45477195    C    T    1311.30    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.794;DB;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7203;MQ=50.21;MQ0=0;MQRankSum=0.52;QD=9.5;ReadPosRankSum=-1.784;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463601    GT:AD:DP:GQ:PL    0/1:77,57:138:99:1341,0,2171
16    2115819    rs8063461    A    G    197.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463601    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
16    2120402    rs7187438    T    C    373.87    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=29;Dels=0.0;FS=10.328;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.373;QD=12.89;ReadPosRankSum=-0.724;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490108    GT:AD:DP:GQ:PL    0/1:13,16:29:99:404,0,459
16    2136624    rs13335638    T    C    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:70,0,29
16    2138218    rs1800718    A    C    778.89    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=4.636;DB;DP=79;Dels=0.0;FS=6.289;HRun=1;HaplotypeScore=1.7323;MQ=58.53;MQ0=0;MQRankSum=1.195;QD=9.86;ReadPosRankSum=-1.777;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:47,32:79:99:809,0,1331
16    2138269    rs1748    T    C    680.66    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=0.292;QD=8.84;ReadPosRankSum=1.569;SNPEFF_AMINO_ACID_CHANGE=D1619;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2138228_2138326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382538    GT:AD:DP:GQ:PL    0/1:50,27:77:99:711,0,1256
16    2138398    rs13332221    C    T    200.82    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.495;DB;DP=38;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.8667;MQ=59.39;MQ0=0;MQRankSum=1.383;QD=5.28;ReadPosRankSum=-1.314;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:24,14:38:99:231,0,599
16    2138422    rs13332222    C    G    365.82    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DB;DP=46;Dels=0.0;FS=1.337;HRun=0;HaplotypeScore=2.1188;MQ=59.5;MQ0=0;MQRankSum=0.168;QD=7.95;ReadPosRankSum=-0.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:29,16:46:99:396,0,786
16    2140454    rs3087632    T    C    229.21    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.98;DB;DP=19;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.449;QD=12.06;ReadPosRankSum=-1.021;SNPEFF_AMINO_ACID_CHANGE=A3426;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2140286_2140591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306101    GT:AD:DP:GQ:PL    0/1:9,10:19:99:259,0,309
16    2140680    rs10960    T    C    321.50    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.062;DB;DP=31;Dels=0.0;FS=6.181;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.466;QD=10.37;ReadPosRankSum=0.64;SNPEFF_AMINO_ACID_CHANGE=I3379V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2140675_2140809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306101    GT:AD:DP:GQ:PL    0/1:20,11:31:99:351,0,604
16    2144299    rs34123233    T    G    36.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415938    GT:AD:DP:GQ:PL    0/1:2,2:4:53.22:67,0,53
16    2152387    rs77028972    A    G    42.35    MQFilter40;QDFilter2    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.18;DB;DP=29;Dels=0.0;FS=8.318;HRun=0;HaplotypeScore=0.7887;MQ=26.99;MQ0=2;MQRankSum=-1.682;QD=1.46;ReadPosRankSum=0.427;SNPEFF_AMINO_ACID_CHANGE=F2401L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2152382_2152634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306101    GT:AD:DP:GQ:PL    0/1:19,10:29:72.34:72,0,360
16    2152388    rs78003543    C    G    43.34    MQFilter40;QDFilter2    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.828;DB;DP=29;Dels=0.0;FS=8.318;HRun=0;HaplotypeScore=0.7887;MQ=26.99;MQ0=2;MQRankSum=-1.531;QD=1.49;ReadPosRankSum=0.226;SNPEFF_AMINO_ACID_CHANGE=V2400;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2152382_2152634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306101    GT:AD:DP:GQ:PL    0/1:19,10:29:73.33:73,0,366
16    2152651    rs9928278    T    C    326.12    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=25;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.8667;MQ=55.71;MQ0=0;MQRankSum=-0.836;QD=13.04;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473780    GT:AD:DP:GQ:PL    0/1:9,14:25:99:356,0,244
16    2155819    rs28610092    A    C    121.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=18;Dels=0.0;FS=8.495;HRun=3;HaplotypeScore=0.9332;MQ=58.96;MQ0=0;MQRankSum=0.609;QD=6.75;ReadPosRankSum=-0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468674    GT:AD:DP:GQ:PL    0/1:12,6:18:99:151,0,373
16    2156021    rs28575767    A    G    111.14    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.34;MQ0=1;MQRankSum=-3.699;QD=4.27;ReadPosRankSum=-0.087;SNPEFF_AMINO_ACID_CHANGE=L1921;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2155866_2156025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306101    GT:AD:DP:GQ:PL    0/1:18,8:26:99:141,0,478
16    2157079    rs3874658    T    C    48.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=33.9;MQ0=0;QD=12.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468674    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:80,6,0
16    2159996    rs9935526    G    A    294.27    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=26;Dels=0.0;FS=10.78;HRun=0;HaplotypeScore=0.0;MQ=48.32;MQ0=0;MQRankSum=0.027;QD=11.32;ReadPosRankSum=-0.571;SNPEFF_AMINO_ACID_CHANGE=A1256;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2159402_2160103;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306101    GT:AD:DP:GQ:PL    0/1:14,12:26:99:324,0,374
16    2160503    rs71385734    T    G    511.01    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.25;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.79;MQ0=1;MQRankSum=-0.155;QD=12.78;ReadPosRankSum=0.042;SNPEFF_AMINO_ACID_CHANGE=A1555;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2158253_2161872;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:19,21:40:99:541,0,578
16    2160973    rs116092985    A    G    257.52    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.68;DB;DP=35;Dels=0.0;FS=3.565;HRun=2;HaplotypeScore=1.4972;MQ=41.38;MQ0=3;MQRankSum=-3.933;QD=7.36;ReadPosRankSum=-0.889;SNPEFF_AMINO_ACID_CHANGE=W1080R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2160596_2161651;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306101    GT:AD:DP:GQ:PL    0/1:16,19:35:99:288,0,498
16    2162887    rs2369068    A    G    602.41    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=2.21;DB;DP=32;Dels=0.0;FS=12.49;HRun=1;HaplotypeScore=1.5661;MQ=59.43;MQ0=0;MQRankSum=0.061;QD=18.83;ReadPosRankSum=0.426;SNPEFF_AMINO_ACID_CHANGE=G1021;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2162789_2162964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:12,19:32:99:632,0,369
16    2164148    rs183977076    G    A    70.96    MQFilter40    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.8;MQ0=0;MQRankSum=-0.271;QD=5.46;ReadPosRankSum=-1.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:5,8:13:28.33:101,0,28
16    2165737    rs116189075    A    G    60.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=54.4;MQ0=0;MQRankSum=0.406;QD=10.13;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:3,3:6:90.58:91,0,91
16    2165740    rs114796022    T    C    65.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=54.4;MQ0=0;MQRankSum=0.406;QD=10.9;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262304    GT:AD:DP:GQ:PL    0/1:3,3:6:95.39:95,0,105
16    2202898    .    G    T    219.49    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DP=17;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.491;QD=12.91;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000210187    GT:AD:DP:GQ:PL    0/1:9,8:17:99:249,0,265
16    2203456    rs26931    T    C    572.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541451    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:606,45,0
16    2216073    rs8062006    G    C    58.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.322;QD=7.32;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAF7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326181    GT:AD:DP:GQ:PL    0/1:5,3:8:88.59:89,0,156
16    2225255    .    G    A    561.24    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.52;DP=42;Dels=0.0;FS=7.194;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.11;QD=13.36;ReadPosRankSum=0.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343516    GT:AD:DP:GQ:PL    0/1:20,22:42:99:591,0,649
16    2233565    rs889495    T    C    166.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343516    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:199,15,0
16    2259865    rs25852    C    G    250.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLST8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301724    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
16    2260556    .    T    C    34.82    QDFilter2    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.126;DP=27;Dels=0.0;FS=9.745;HRun=3;HaplotypeScore=0.8321;MQ=55.58;MQ0=0;MQRankSum=-0.786;QD=1.29;ReadPosRankSum=1.66;SNPEFF_AMINO_ACID_CHANGE=G49;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2260523_2260651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf79;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328540    GT:AD:DP:GQ:PL    0/1:17,10:27:64.81:65,0,465
16    2260612    rs26856    T    C    139.40    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.794;QD=9.29;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=S31G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2260523_2260651;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf79;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328540    GT:AD:DP:GQ:PL    0/1:8,7:15:99:169,0,201
16    2263507    rs160545    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLST8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301724    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    2279370    rs2241071    G    A    107.39    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=17.9;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E4F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301727    GT:AD:DP:GQ:PL    0/1:1,5:6:27.18:137,0,27
16    2282256    rs26839    G    A    900.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=29.06;SNPEFF_AMINO_ACID_CHANGE=R167H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2282172_2282365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E4F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301727    GT:AD:DP:GQ:PL    1/1:0,31:31:72.23:934,72,0
16    2287026    rs117794268    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E4F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301727    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    2305539    rs155243    A    G    226.14    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.134;DB;DP=21;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.599;QD=10.77;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009065.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454671    GT:AD:DP:GQ:PL    0/1:11,10:21:99:256,0,396
16    2313343    rs40342    C    T    303.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.42;DB;DP=26;Dels=0.0;FS=12.525;HRun=0;HaplotypeScore=0.9159;MQ=57.82;MQ0=0;MQRankSum=-0.19;QD=11.68;ReadPosRankSum=0.571;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009065.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454671    GT:AD:DP:GQ:PL    0/1:13,13:26:99:334,0,358
16    2314401    rs161431    G    A    462.21    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.335;QD=15.41;ReadPosRankSum=-1.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009065.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454671    GT:AD:DP:GQ:PL    0/1:13,17:30:99:492,0,454
16    2331430    rs149532    A    G    620.32    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=2.984;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.187;QD=16.77;ReadPosRankSum=-0.096;SNPEFF_AMINO_ACID_CHANGE=S1372;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2331382_2331510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    0/1:15,22:37:99:650,0,450
16    2348208    rs323044    G    C    635.99    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.577;QD=24.46;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    0/1:6,20:26:74.79:666,0,75
16    2348528    rs323043    G    C    341.59    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.185;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.875;QD=9.49;ReadPosRankSum=-1.634;SNPEFF_AMINO_ACID_CHANGE=P585;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2348387_2348541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    0/1:19,17:36:99:372,0,589
16    2348781    rs323042    A    G    50.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
16    2349206    rs114077531    C    T    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
16    2349371    rs170447    T    C    287.21    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.931;DB;DP=26;Dels=0.0;FS=7.952;HRun=1;HaplotypeScore=0.9159;MQ=59.11;MQ0=0;MQRankSum=0.571;QD=11.05;ReadPosRankSum=-2.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    0/1:14,12:26:99:317,0,448
16    2350115    rs141621969    G    A    833.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.323;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.165;QD=12.63;ReadPosRankSum=0.191;SNPEFF_AMINO_ACID_CHANGE=A501V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2350006_2350149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    0/1:30,35:66:99:863,0,851
16    2358313    rs323074    C    T    146.49    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=18.31;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    0/1:3,5:8:99:176,0,101
16    2369485    rs11407743    C    CA    109.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=9;FS=0.0;HRun=13;HaplotypeScore=58.2257;IndelType=I;MQ=57.23;MQ0=0;MQRankSum=0.747;QD=12.21;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    1/1:2,6:9:2.91:149,3,0
16    2373786    rs323060    C    A    337.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.69;MQ0=0;QD=10.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    1/1:1,30:31:30.09:370,30,0
16    2375961    rs46725    C    T    662.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301732    GT:AD:DP:GQ:PL    1/1:1,18:19:51.17:695,51,0
16    2475021    rs11641123    T    C    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    2480948    rs12923030    A    G    1599.39    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.426;DB;DP=138;Dels=0.0;FS=5.224;HRun=0;HaplotypeScore=3.5487;MQ=59.83;MQ0=0;MQRankSum=0.758;QD=11.59;ReadPosRankSum=-0.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:80,58:138:99:1629,0,2575
16    2485896    rs12928789    A    G    61.06    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.429;QD=3.82;ReadPosRankSum=0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:10,6:16:91.06:91,0,334
16    2486998    rs12921396    A    T    320.07    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.054;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9778;MQ=60.0;MQ0=0;MQRankSum=1.03;QD=20.0;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:6,10:16:99:350,0,194
16    2487012    rs34456414    C    CT    553.80    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=91.2903;IndelType=I;MQ=60.49;MQ0=0;MQRankSum=0.034;QD=25.17;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:8,14:22:99:593,0,270
16    2488211    rs12926008    T    C    87.51    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.688;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.474;QD=5.15;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:12,5:17:99:118,0,428
16    2498828    rs28417759    A    G    785.45    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.867;DB;DP=84;Dels=0.0;FS=3.045;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.192;QD=9.35;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:51,33:84:99:815,0,1523
16    2498849    rs28670436    G    A    890.80    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DB;DP=86;Dels=0.0;FS=5.728;HRun=0;HaplotypeScore=0.9998;MQ=59.24;MQ0=0;MQRankSum=-0.516;QD=10.36;ReadPosRankSum=-1.808;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:51,35:86:99:921,0,1461
16    2499011    rs8060813    T    C    423.12    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.572;DB;DP=30;Dels=0.0;FS=5.891;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=-0.731;QD=14.1;ReadPosRankSum=-1.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:13,17:30:99:453,0,380
16    2499786    .    G    GTCCCCTCCA    1630.59    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.722;DP=52;FS=24.774;HRun=0;HaplotypeScore=359.3283;IndelType=I;MQ=54.67;MQ0=0;MQRankSum=-1.505;QD=31.36;ReadPosRankSum=-1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:32,18:52:99:1670,0,1646
16    2500071    rs12919892    G    C    151.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.036;QD=15.14;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:4,6:10:99:181,0,139
16    2510603    rs4786284    C    T    274.67    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.769;QD=11.94;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293968    GT:AD:DP:GQ:PL    0/1:12,11:23:99:305,0,358
16    2512523    rs3810794    G    A    35.47    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.07;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S286;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2512416_2512527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf59;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361837    GT:AD:DP:GQ:PL    0/1:5,2:7:65.46:65,0,151
16    2607998    .    C    G    441.73    HaplotypeScoreFilter13    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=3.305;DP=68;Dels=0.0;FS=1.046;HRun=1;HaplotypeScore=18.777;MQ=41.52;MQ0=0;MQRankSum=1.318;QD=6.5;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474706    GT:AD:DP:GQ:PL    0/1:46,21:68:99:472,0,1189
16    2608001    rs77373540    G    A    913.42    HaplotypeScoreFilter13    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=68;Dels=0.0;FS=3.528;HRun=1;HaplotypeScore=19.7636;MQ=41.8;MQ0=0;MQRankSum=0.211;QD=13.43;ReadPosRankSum=-2.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474706    GT:AD:DP:GQ:PL    0/1:28,40:68:99:943,0,746
16    2645965    rs1005273    G    A    296.46    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=28;Dels=0.0;FS=1.974;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.176;QD=10.59;ReadPosRankSum=-0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268673    GT:AD:DP:GQ:PL    0/1:17,11:28:99:326,0,553
16    2747616    rs3094476    A    G    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301738    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    2747857    rs3094475    C    T    983.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301738    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1017,78,0
16    2748063    rs3094474    C    T    591.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301738    GT:AD:DP:GQ:PL    1/1:0,24:24:51.15:624,51,0
16    2752154    rs739717    A    G    69.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301738    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
16    2790068    rs3094786    G    T    68.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.77;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092117.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382313    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
16    2807263    rs2107321    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    2808085    rs3094779    G    T    518    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:551,42,0
16    2808363    rs3094778    C    T    2315.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9321;MQ=59.27;MQ0=0;MQRankSum=-1.402;QD=36.75;ReadPosRankSum=-0.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    1/1:1,62:63:99:2348,148,0
16    2810623    rs2285879    T    G    126.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
16    2812890    rs2240141    A    G    8349.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.298;DB;DP=245;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.1753;MQ=59.81;MQ0=0;MQRankSum=-1.328;QD=34.08;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=K39;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2811562_2818262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544933    GT:AD:DP:GQ:PL    1/1:2,243:245:99:8349,564,0
16    2812939    rs2240140    C    A    8190.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DB;DP=244;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.355;MQ=59.91;MQ0=0;MQRankSum=-1.718;QD=33.57;ReadPosRankSum=0.438;SNPEFF_AMINO_ACID_CHANGE=P56T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2811562_2818262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544933    GT:AD:DP:GQ:PL    1/1:1,243:244:99:8190,611,0
16    2814162    rs3094775    G    A    1896.66    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=124;Dels=0.0;FS=3.385;HRun=0;HaplotypeScore=0.9979;MQ=59.63;MQ0=0;MQRankSum=0.553;QD=15.3;ReadPosRankSum=0.397;SNPEFF_AMINO_ACID_CHANGE=R1211;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2811562_2818262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    0/1:59,65:124:99:1927,0,1889
16    2815237    rs3094773    A    C    2483.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.648;DB;DP=82;Dels=0.0;FS=3.456;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=30.29;ReadPosRankSum=0.549;SNPEFF_AMINO_ACID_CHANGE=R1570;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2811562_2818262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    1/1:1,81:82:99:2517,156,0
16    2818161    rs2301802    T    C    658.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_AMINO_ACID_CHANGE=S1796;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2811562_2818262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544933    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:692,57,0
16    2818704    rs3094792    T    G    67.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.4;SNPEFF_AMINO_ACID_CHANGE=Y75D;SNPEFF_CODON_CHANGE=Tac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2818482_2818942;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382300    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
16    2821573    rs8017    C    T    1576.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4947;MQ=58.95;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=S129N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2821415_2821605;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262306    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1610,120,0
16    2821763    rs1058855    C    G    115.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=1.6988;MQ=51.77;MQ0=0;MQRankSum=0.731;QD=19.32;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    0/1:2,4:6:26.71:146,0,27
16    2821988    rs3214191    TC    T    425.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=30.1383;IndelType=D;MQ=60.9;MQ0=0;QD=35.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:468,36,0
16    2825594    rs3094774    A    G    534.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301740    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:568,42,0
16    2834826    rs12931183    A    G    171.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293851    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
16    2835189    rs12599918    G    A    31.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293851    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
16    2836027    rs7195287    T    G    538.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=28.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293851    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:572,45,0
16    2836271    rs11643898    C    G    120.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293851    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
16    2836398    rs79879395    A    G    293.04    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=22.54;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293851    GT:AD:DP:GQ:PL    0/1:4,9:13:99:323,0,119
16    2867450    rs71386691    G    C    100.42    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=0.198;QD=14.35;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=P28;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2867431_2867457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005995    GT:AD:DP:GQ:PL    0/1:2,5:7:45.01:130,0,45
16    2868641    rs2074907    A    G    113.32    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.376;DB;DP=16;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.588;QD=7.08;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005995    GT:AD:DP:GQ:PL    0/1:9,7:16:99:143,0,316
16    2871121    rs11076844    T    C    1479.85    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.262;DB;DP=123;Dels=0.0;FS=3.154;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.044;QD=12.03;ReadPosRankSum=0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005995    GT:AD:DP:GQ:PL    0/1:69,53:123:99:1510,0,2269
16    2871555    rs10641    G    A    468.52    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.856;DB;DP=38;Dels=0.0;FS=3.012;HRun=0;HaplotypeScore=1.8519;MQ=60.0;MQ0=0;MQRankSum=-0.254;QD=12.33;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=P284;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2871367_2871716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450020    GT:AD:DP:GQ:PL    0/1:21,17:38:99:499,0,523
16    2880614    rs2190809    T    C    842.83    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=4.537;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.411;QD=13.82;ReadPosRankSum=-0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382280    GT:AD:DP:GQ:PL    0/1:33,28:61:99:873,0,999
16    2880870    rs2240614    G    C    571.25    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.484;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.48;MQ0=0;MQRankSum=1.752;QD=12.42;ReadPosRankSum=-0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382280    GT:AD:DP:GQ:PL    0/1:17,29:46:99:601,0,593
16    2880960    rs1860061    G    C    97.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=16.27;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382280    GT:AD:DP:GQ:PL    0/1:2,4:6:66.35:128,0,66
16    2881675    rs758189    G    A    235.78    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.347;QD=12.41;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382280    GT:AD:DP:GQ:PL    0/1:9,10:19:99:266,0,280
16    2882197    rs12373    G    T    334.43    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=32;Dels=0.0;FS=1.651;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.038;QD=10.45;ReadPosRankSum=-0.959;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382280    GT:AD:DP:GQ:PL    0/1:19,13:32:99:364,0,639
16    2882267    rs886953    G    C    107.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9166;MQ=57.66;MQ0=0;MQRankSum=1.307;QD=10.71;ReadPosRankSum=0.361;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382280    GT:AD:DP:GQ:PL    0/1:5,4:10:99:137,0,180
16    2903047    rs1054912    G    C    173.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.61;MQ0=0;QD=28.98;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161006    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
16    2903068    rs113609771    A    C    69.62    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=-0.406;QD=9.95;ReadPosRankSum=0.406;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161006    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,104
16    2903081    rs3743944    G    A    254.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.19;MQ0=0;QD=28.31;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161006    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:288,21,0
16    2903845    rs2074294    G    T    447.20    PASS    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=0.128;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-1.149;QD=18.63;ReadPosRankSum=-0.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161006    GT:AD:DP:GQ:PL    0/1:5,19:24:88.74:477,0,89
16    2903850    rs112285893    G    C    61.49    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.372;QD=2.2;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000161006    GT:AD:DP:GQ:PL    0/1:22,6:28:91.48:91,0,452
16    2946325    rs111441980    A    G    34.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.51;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293981    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:64,0,32
16    2979640    rs11644380    T    C    110.81    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=15.83;ReadPosRankSum=1.495;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_2979614_2980011;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:2,5:7:61.90:141,0,62
16    2984542    rs76530521    C    T    450.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:483,39,0
16    2986289    rs9921808    C    G    107.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.86;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:2,4:6:61.97:137,0,62
16    2986323    rs9928222    T    C    270.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:303,24,0
16    2986894    rs113530410    G    T    71.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.38;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:2,3:5:58.06:102,0,58
16    2987315    rs61747749    G    A    132.64    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.95;MQ0=0;MQRankSum=0.702;QD=6.98;ReadPosRankSum=1.171;SNPEFF_AMINO_ACID_CHANGE=P181;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_2987122_2987385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344592    GT:AD:DP:GQ:PL    0/1:12,7:19:99:163,0,355
16    2988064    rs75310238    G    A    291.71    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.529;QD=18.23;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:7,9:16:99:322,0,199
16    2988113    rs34921588    A    G    199.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.742;DB;DP=18;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.203;QD=11.09;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:10,8:18:99:230,0,195
16    2988469    rs12929501    C    G    437.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.781;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9601;MQ=57.21;MQ0=0;MQRankSum=0.464;QD=16.19;ReadPosRankSum=-1.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:12,15:27:99:467,0,314
16    2988507    rs12373088    T    C    216.40    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.31;DB;DP=22;Dels=0.0;FS=2.282;HRun=1;HaplotypeScore=0.0;MQ=55.47;MQ0=0;MQRankSum=0.675;QD=9.84;ReadPosRankSum=-0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:13,9:22:99:246,0,337
16    2988553    rs71158126    C    CTG    324.58    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=54.8734;IndelType=I;MQ=52.95;MQ0=0;MQRankSum=0.296;QD=29.51;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:4,7:11:99:364,0,102
16    2989884    rs1060485    T    C    80.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=16.14;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:111,0,68
16    2989905    rs1060484    G    T    143.38    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=17.92;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLYWCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253928    GT:AD:DP:GQ:PL    0/1:2,6:8:53.71:173,0,54
16    3014412    rs1076231    G    C    167.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.201;QD=11.99;ReadPosRankSum=0.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKMYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431515    GT:AD:DP:GQ:PL    0/1:7,7:14:99:198,0,206
16    3014999    rs62032327    C    G    31.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.49;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=H78Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3014860_3015034;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KREMEN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303746    GT:AD:DP:GQ:PL    0/1:5,2:7:61.40:61,0,150
16    3016885    rs58462745    A    G    149.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKMYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431515    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:182,15,0
16    3021116    rs4786365    T    C    217.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KREMEN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303746    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:251,18,0
16    3024188    rs2074528    T    C    189.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=27.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAQR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293978    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:223,21,0
16    3063585    rs151129127    G    A    653.33    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.059;DB;DP=45;Dels=0.0;FS=2.549;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.604;QD=14.52;ReadPosRankSum=1.445;SNPEFF_AMINO_ACID_CHANGE=P74;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3062457_3064506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445369    GT:AD:DP:GQ:PL    0/1:21,24:45:99:683,0,649
16    3064060    rs150261223    G    A    378.13    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.513;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.644;QD=12.6;ReadPosRankSum=-0.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328796    GT:AD:DP:GQ:PL    0/1:16,14:30:99:408,0,499
16    3073225    rs150529156    G    C    276.31    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=19;Dels=0.0;FS=2.003;HRun=0;HaplotypeScore=0.9933;MQ=59.01;MQ0=0;MQRankSum=1.91;QD=14.54;ReadPosRankSum=0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC64B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389347    GT:AD:DP:GQ:PL    0/1:8,10:19:99:306,0,271
16    3075999    rs2245000    C    G    1227.31    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3204;MQ=59.53;MQ0=0;MQRankSum=0.792;QD=13.95;ReadPosRankSum=-0.723;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC64B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389347    GT:AD:DP:GQ:PL    0/1:47,41:88:99:1257,0,1420
16    3077710    rs71391797    CT    C    102.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=24;FS=0.0;HRun=17;HaplotypeScore=104.1876;IndelType=D;MQ=53.91;MQ0=0;MQRankSum=-0.361;QD=4.26;ReadPosRankSum=-0.794;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC64B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389347    GT:AD:DP:GQ:PL    0/1:12,11:24:19.15:141,0,19
16    3077867    rs1052458    G    C    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC64B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389347    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
16    3078544    rs2079244    T    G    53.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=13.5;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253952    GT:AD:DP:GQ:PL    0/1:1,3:4:23.24:84,0,23
16    3085574    rs58816873    C    G    185.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.289;QD=15.49;ReadPosRankSum=-1.835;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC64B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389347    GT:AD:DP:GQ:PL    0/1:4,8:12:82.89:216,0,83
16    3106994    rs1064948    A    T    989.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325800    GT:AD:DP:GQ:PL    1/1:0,30:30:78.24:1023,78,0
16    3115628    rs1554999    A    C    774.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9736;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336577    GT:AD:DP:GQ:PL    1/1:0,21:21:63.16:808,63,0
16    3117272    rs5815153    CTG    C    236.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=100.2699;IndelType=D;MQ=50.09;MQ0=1;QD=13.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008180    GT:AD:DP:GQ:PL    1/1:7,9:16:31.81:278,32,0
16    3117937    rs2239303    G    A    170.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9472;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=12.18;ReadPosRankSum=-0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532086    GT:AD:DP:GQ:PL    0/1:6,8:14:99:200,0,175
16    3118849    rs12922880    C    T    159.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.0;MQ0=0;QD=26.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532086    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
16    3118865    rs12934561    T    C    154.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.94;MQ0=0;QD=22.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532086    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:187,15,0
16    3119020    .    A    G    147.37    MQFilter40    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DP=33;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.9734;MQ=17.59;MQ0=13;MQRankSum=-0.921;QD=4.47;ReadPosRankSum=1.886;SNPEFF_AMINO_ACID_CHANGE=R101;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3118991_3119376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552936    GT:AD:DP:GQ:PL    0/1:16,17:33:99:177,0,101
16    3119167    rs34184287    T    C    225.69    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=27;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=33.72;MQ0=5;MQRankSum=-1.286;QD=8.36;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=V106;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3118991_3119820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000008180    GT:AD:DP:GQ:PL    0/1:12,15:27:99:256,0,270
16    3119297    rs71818662    C    CG    1000.37    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=7.281;DB;DP=77;FS=0.872;HRun=6;HaplotypeScore=323.6143;IndelType=I;MQ=53.51;MQ0=4;MQRankSum=-0.254;QD=12.35;ReadPosRankSum=-0.378;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_3118991_3119820;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000008180    GT:AD:DP:GQ:PL    0/1:44,37:77:99:1039,0,947
16    3119384    .    C    A    268.84    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.71;DP=40;Dels=0.0;FS=1.668;HRun=0;HaplotypeScore=0.5784;MQ=49.25;MQ0=4;MQRankSum=-4.332;QD=6.72;ReadPosRankSum=-0.957;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525228    GT:AD:DP:GQ:PL    0/1:22,18:40:99:299,0,562
16    3131566    rs2741927    G    T    108.62    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.05;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525377    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
16    3131663    rs4247354    A    G    118.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.97;MQ0=21;QD=4.4;SNPEFF_AMINO_ACID_CHANGE=R123;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3131634_3131908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525377    GT:AD:DP:GQ:PL    1/1:8,18:27:12.04:151,12,0
16    3141713    rs12935803    G    C    250.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252463    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:283,24,0
16    3165425    rs909410    A    G    1595.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_AMINO_ACID_CHANGE=T43A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3165356_3165569;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF205;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219091    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1629,126,0
16    3166618    rs4785928    C    G    164.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF205;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444510    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
16    3191356    rs2735537    G    A    671.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC108134.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428155    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:705,54,0
16    3254470    rs1834026    T    C    1597.41    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=1.953;DB;DP=98;Dels=0.0;FS=0.814;HRun=1;HaplotypeScore=1.8216;MQ=59.76;MQ0=0;MQRankSum=0.071;QD=16.3;ReadPosRankSum=-1.363;SNPEFF_AMINO_ACID_CHANGE=F75S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3254247_3255188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304646    GT:AD:DP:GQ:PL    0/1:36,62:98:99:1627,0,1047
16    3254972    rs2075851    T    C    1348.32    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=3.85;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7219;MQ=59.1;MQ0=0;MQRankSum=0.723;QD=14.5;ReadPosRankSum=1.083;SNPEFF_AMINO_ACID_CHANGE=G242;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3254247_3255188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304646    GT:AD:DP:GQ:PL    0/1:48,45:93:99:1378,0,1545
16    3282275    rs9927763    C    A    530.05    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.51;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=18.93;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF200;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396868    GT:AD:DP:GQ:PL    0/1:10,18:28:99:560,0,333
16    3282605    rs2075852    T    C    524.03    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.875;DB;DP=32;Dels=0.0;FS=2.993;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=1.381;QD=16.38;ReadPosRankSum=-0.499;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF200;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396868    GT:AD:DP:GQ:PL    0/1:13,19:32:99:554,0,439
16    3283909    rs12598599    C    G    225.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.053;QD=14.12;ReadPosRankSum=-1.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF200;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396868    GT:AD:DP:GQ:PL    0/1:8,8:16:99:256,0,283
16    3296429    rs224204    G    A    216.44    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=15.46;ReadPosRankSum=0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219596    GT:AD:DP:GQ:PL    0/1:6,8:14:99:246,0,171
16    3296616    rs224205    C    T    134.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=15;Dels=0.0;FS=5.88;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=8.98;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219596    GT:AD:DP:GQ:PL    0/1:9,6:15:99:165,0,262
16    3297073    rs224206    A    G    2292    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=31.83;SNPEFF_AMINO_ACID_CHANGE=D299;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3297016_3297246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534868    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2325,187,0
16    3297175    rs224207    T    C    2896.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=31.83;SNPEFF_AMINO_ACID_CHANGE=Q265;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3297016_3297246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534868    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2929,226,0
16    3297181    rs224208    C    T    3060.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=E263;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3297016_3297246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534868    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3094,229,0
16    3298865    rs224212    T    C    2750.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9992;MQ=59.18;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219596    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2784,220,0
16    3299749    rs224213    G    A    93.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.61;SNPEFF_AMINO_ACID_CHANGE=R103;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3299431_3299780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534868    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
16    3304654    rs224224    T    C    239.61    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=17;Dels=0.0;FS=2.218;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.241;QD=14.09;ReadPosRankSum=0.818;SNPEFF_AMINO_ACID_CHANGE=G138;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3304158_3304790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219596    GT:AD:DP:GQ:PL    0/1:9,8:17:99:270,0,238
16    3304762    rs224225    A    G    379.79    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.271;DB;DP=43;Dels=0.0;FS=2.747;HRun=0;HaplotypeScore=1.9648;MQ=58.92;MQ0=0;MQRankSum=-0.793;QD=8.83;ReadPosRankSum=-0.547;SNPEFF_AMINO_ACID_CHANGE=D102;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3304158_3304790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEFV;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219596    GT:AD:DP:GQ:PL    0/1:26,17:43:99:410,0,716
16    3362953    rs37840    T    G    83.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF75A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293995    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
16    3405875    rs1009429    T    C    733.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.91;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304936    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:766,60,0
16    3405986    rs1218762    G    A    863.92    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.063;DB;DP=63;Dels=0.0;FS=3.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.134;QD=13.71;ReadPosRankSum=-1.289;SNPEFF_AMINO_ACID_CHANGE=G16S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3405889_3406924;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304936    GT:AD:DP:GQ:PL    0/1:33,30:63:99:894,0,1072
16    3405994    rs1228348    A    G    2035.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_AMINO_ACID_CHANGE=S18;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3405889_3406924;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304936    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2069,165,0
16    3406387    rs1218763    C    G    1300.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=C149W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3405889_3406924;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304936    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1333,102,0
16    3406516    rs11643487    A    G    413.44    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.247;DB;DP=32;Dels=0.0;FS=3.254;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=12.92;ReadPosRankSum=0.855;SNPEFF_AMINO_ACID_CHANGE=T192;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3405889_3406924;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304936    GT:AD:DP:GQ:PL    0/1:18,14:32:99:443,0,505
16    3406626    rs11648783    G    A    416.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.815;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-1.034;QD=14.89;ReadPosRankSum=-1.172;SNPEFF_AMINO_ACID_CHANGE=R229H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3405889_3406924;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304936    GT:AD:DP:GQ:PL    0/1:14,14:28:99:447,0,388
16    3434699    rs27230    A    G    1418.74    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=2.168;DB;DP=115;Dels=0.0;FS=12.379;HRun=0;HaplotypeScore=2.8656;MQ=59.4;MQ0=0;MQRankSum=-1.031;QD=12.34;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=Y120H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3434459_3434941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF434;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304926    GT:AD:DP:GQ:PL    0/1:61,54:115:99:1449,0,1851
16    3434966    rs27231    T    C    919.78    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.372;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=1.247;QD=19.16;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF434;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304926    GT:AD:DP:GQ:PL    0/1:21,27:48:99:950,0,633
16    3447282    rs27241    C    G    925.90    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.007;DB;DP=63;Dels=0.0;FS=0.968;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.255;QD=14.7;ReadPosRankSum=1.259;SNPEFF_AMINO_ACID_CHANGE=E91D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3447192_3447744;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF434;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418960    GT:AD:DP:GQ:PL    0/1:30,33:63:99:956,0,909
16    3451881    rs37810    C    T    719.54    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=43;Dels=0.0;FS=2.637;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=16.73;ReadPosRankSum=-1.118;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF434;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304926    GT:AD:DP:GQ:PL    0/1:16,27:43:99:750,0,480
16    3452193    rs37811    T    G    4326.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=A63;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3451420_3452406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF174;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268655    GT:AD:DP:GQ:PL    1/1:1,130:131:99:4326,337,0
16    3452453    rs34247880    C    CT    691.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.541;DB;DP=54;FS=0.0;HRun=15;HaplotypeScore=362.656;IndelType=I;MQ=54.6;MQ0=0;MQRankSum=-0.478;QD=12.8;ReadPosRankSum=-0.923;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268655    GT:AD:DP:GQ:PL    1/1:23,30:54:75.53:733,76,0
16    3455079    rs37813    T    C    437.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344823    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:471,36,0
16    3458219    rs37819    C    T    928    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344823    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:961,72,0
16    3486285    rs12737    C    A    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF597;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301744    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
16    3487556    rs40534    A    T    413.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.762;DB;DP=28;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.487;QD=14.75;ReadPosRankSum=-1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF597;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301744    GT:AD:DP:GQ:PL    0/1:12,16:28:99:443,0,428
16    3487576    rs37825    T    C    293.01    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.184;QD=15.42;ReadPosRankSum=0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF597;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301744    GT:AD:DP:GQ:PL    0/1:9,10:19:99:323,0,304
16    3490922    rs2270494    G    C    565.11    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.816;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8316;MQ=59.57;MQ0=0;MQRankSum=0.266;QD=10.47;ReadPosRankSum=0.106;SNPEFF_AMINO_ACID_CHANGE=L15;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3490807_3490933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF597;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301744    GT:AD:DP:GQ:PL    0/1:33,21:54:99:595,0,1071
16    3493240    rs3816916    A    C    121.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=10.12;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF597;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301744    GT:AD:DP:GQ:PL    0/1:6,6:12:99:151,0,208
16    3493288    rs34496784    T    C    137.48    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=17.19;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF597;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301744    GT:AD:DP:GQ:PL    0/1:2,6:8:50.01:167,0,50
16    3493301    rs7500590    T    C    155.16    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=22.17;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF597;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301744    GT:AD:DP:GQ:PL    0/1:1,6:7:21.18:185,0,21
16    3533577    rs1137454    C    G    595.61    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.09;DB;DP=50;Dels=0.0;FS=1.298;HRun=2;HaplotypeScore=0.9983;MQ=58.6;MQ0=0;MQRankSum=1.03;QD=11.91;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=G119;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3533363_3533597;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA60;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360862    GT:AD:DP:GQ:PL    0/1:25,24:50:99:626,0,837
16    3534892    rs13740    G    A    411.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=56.35;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=R180Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3534691_3535083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421765    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:444,33,0
16    3544512    rs61731450    G    C    296.48    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DB;DP=26;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=1.9301;MQ=58.2;MQ0=0;MQRankSum=0.606;QD=11.4;ReadPosRankSum=0.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437192    GT:AD:DP:GQ:PL    0/1:16,10:26:99:326,0,508
16    3544586    rs61731451    C    T    472.08    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=2.206;DB;DP=43;Dels=0.0;FS=7.143;HRun=0;HaplotypeScore=0.9867;MQ=55.44;MQ0=0;MQRankSum=0.663;QD=10.98;ReadPosRankSum=1.719;SNPEFF_AMINO_ACID_CHANGE=R113H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3544524_3544877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf90;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437192    GT:AD:DP:GQ:PL    0/1:26,17:43:99:502,0,640
16    3558262    rs74751146    CT    C    136.45    PASS    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=2.199;DB;DP=62;FS=1.144;HRun=13;HaplotypeScore=250.0173;IndelType=D;MQ=58.5;MQ0=0;MQRankSum=0.358;QD=2.2;ReadPosRankSum=1.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341633    GT:AD:DP:GQ:PL    0/1:45,16:62:99:175,0,893
16    3602227    rs140902603    AG    A    1669.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=3;HaplotypeScore=111.4175;IndelType=D;MQ=60.47;MQ0=0;QD=36.3;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000301749    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1712,138,0
16    3611610    rs8050566    C    T    216.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.91;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=12.03;ReadPosRankSum=0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324659    GT:AD:DP:GQ:PL    0/1:10,8:18:99:247,0,357
16    3613126    rs12445430    C    T    65.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=10.94;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=L586;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3612901_3614613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324659    GT:AD:DP:GQ:PL    0/1:3,3:6:95.64:96,0,99
16    3638809    rs8058233    G    A    400.55    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.004;QD=12.52;ReadPosRankSum=1.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294008    GT:AD:DP:GQ:PL    0/1:19,13:32:99:431,0,594
16    3639139    rs3810812    A    G    2043.61    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=2.455;DB;DP=137;Dels=0.0;FS=5.206;HRun=0;HaplotypeScore=0.9832;MQ=59.66;MQ0=0;MQRankSum=-1.027;QD=14.92;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=N1500;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3639003_3641311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294008    GT:AD:DP:GQ:PL    0/1:68,69:137:99:2074,0,2066
16    3656482    rs8061528    C    T    1891.13    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=2.386;DB;DP=189;Dels=0.0;FS=2.681;HRun=0;HaplotypeScore=1.7219;MQ=59.88;MQ0=0;MQRankSum=-0.007;QD=10.01;ReadPosRankSum=-0.037;SNPEFF_AMINO_ACID_CHANGE=A251;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3656475_3656699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294008    GT:AD:DP:GQ:PL    0/1:116,72:189:99:1921,0,3414
16    3707409    rs1799892    G    C    157.95    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=17;Dels=0.0;FS=6.422;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=9.29;ReadPosRankSum=-0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246957    GT:AD:DP:GQ:PL    0/1:10,7:17:99:188,0,328
16    3707747    rs1053874    G    A    371.87    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.388;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.613;QD=16.17;ReadPosRankSum=0.355;SNPEFF_AMINO_ACID_CHANGE=R127Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3707721_3707817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414110    GT:AD:DP:GQ:PL    0/1:8,15:23:99:402,0,239
16    3721773    rs1136948    G    C    248.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=-1.134;QD=20.7;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=D342E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3721723_3721792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538171    GT:AD:DP:GQ:PL    0/1:4,8:12:99:278,0,120
16    3726160    rs8050400    A    G    575.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246957    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:608,48,0
16    3738887    rs2072379    C    T    157.35    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.577;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=22.48;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246957    GT:AD:DP:GQ:PL    0/1:2,5:7:48.83:187,0,49
16    3811556    rs886528    A    G    1185.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.495;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.825;QD=27.57;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREBBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262367    GT:AD:DP:GQ:PL    1/1:1,42:43:54.08:1219,54,0
16    3828172    rs130003    A    G    1210.84    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.891;DB;DP=77;Dels=0.0;FS=5.75;HRun=1;HaplotypeScore=1.8273;MQ=59.7;MQ0=0;MQRankSum=-0.145;QD=15.73;ReadPosRankSum=-1.039;SNPEFF_AMINO_ACID_CHANGE=Y613;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3828012_3828183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREBBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382070    GT:AD:DP:GQ:PL    0/1:37,39:77:99:1241,0,1135
16    3860539    rs130043    G    A    557.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.688;DB;DP=34;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.654;QD=16.39;ReadPosRankSum=0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREBBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262367    GT:AD:DP:GQ:PL    0/1:17,17:34:99:587,0,538
16    3860700    rs144344016    C    T    761.97    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=46;Dels=0.0;FS=2.713;HRun=2;HaplotypeScore=0.9665;MQ=59.5;MQ0=0;MQRankSum=1.444;QD=16.56;ReadPosRankSum=2.089;SNPEFF_AMINO_ACID_CHANGE=V293;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_3860604_3860780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREBBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262367    GT:AD:DP:GQ:PL    0/1:19,26:46:99:792,0,562
16    4015729    rs879620    C    T    706.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:739,54,0
16    4016676    rs2230742    A    G    3957.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6487;MQ=59.65;MQ0=0;QD=30.44;SNPEFF_AMINO_ACID_CHANGE=H1054;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4012657_4016967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,130:130:99:3957,310,0
16    4027605    rs2240735    C    T    155.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.4;SNPEFF_AMINO_ACID_CHANGE=A902;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4027483_4027631;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:188,15,0
16    4027688    rs2531990    T    C    103.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,6:6:12.01:136,12,0
16    4027749    rs2601774    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    4028877    rs2531987    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    4033436    rs2230739    T    C    133.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.7;SNPEFF_AMINO_ACID_CHANGE=I772M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4033233_4033441;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
16    4039141    rs2072341    A    G    1113.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,32:32:87.25:1147,87,0
16    4042049    rs2601790    A    G    192.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:225,18,0
16    4042449    rs2239307    C    T    243.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
16    4042470    rs2239308    T    C    89.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=12.82;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    0/1:3,4:7:99:120,0,104
16    4043292    rs2239309    C    G    125.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
16    4164364    rs2230738    C    T    963.90    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.323;DB;DP=75;Dels=0.0;FS=8.121;HRun=0;HaplotypeScore=1.5572;MQ=59.69;MQ0=0;MQRankSum=0.887;QD=12.85;ReadPosRankSum=-1.654;SNPEFF_AMINO_ACID_CHANGE=R360;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4163751_4165486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    0/1:44,31:75:99:994,0,1400
16    4165432    rs2530898    T    C    128.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.41;SNPEFF_AMINO_ACID_CHANGE=P4;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4163751_4165486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000294016    GT:AD:DP:GQ:PL    1/1:0,5:6:15.02:161,15,0
16    4242028    rs10852642    A    T    685.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=38.08;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:718,54,0
16    4242093    rs8051399    C    T    1957.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7335;MQ=59.59;MQ0=0;QD=34.96;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1991,153,0
16    4245349    rs11076819    G    C    73.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=24.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
16    4245351    rs11076820    A    C    71.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=23.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
16    4245365    rs11076821    T    A    149.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:183,15,0
16    4245393    rs11076822    T    C    275.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:309,24,0
16    4245426    rs11076823    C    T    646.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=56.04;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:680,51,0
16    4245693    rs10852643    A    G    1813.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.72;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=R115;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4245554_4245787;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537996    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1847,138,0
16    4245909    rs11865087    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    4247607    rs150105361    T    C    67.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.76;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:97,0,25
16    4247679    rs12449233    G    A    378.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:411,33,0
16    4254490    rs142234010    G    C    224.61    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=37;Dels=0.0;FS=1.662;HRun=2;HaplotypeScore=0.0;MQ=56.81;MQ0=0;MQRankSum=-1.252;QD=6.07;ReadPosRankSum=-1.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330063    GT:AD:DP:GQ:PL    0/1:23,14:37:99:255,0,695
16    4386814    rs669561    T    C    391.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;QD=24.47;SNPEFF_AMINO_ACID_CHANGE=Y288;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4386726_4389598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262366    GT:AD:DP:GQ:PL    1/1:0,16:16:33.10:425,33,0
16    4387424    rs8057701    A    G    122.25    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=17.46;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=T492A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4386726_4389598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262366    GT:AD:DP:GQ:PL    0/1:1,6:7:20.55:152,0,21
16    4390688    rs78320503    A    G    78.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262366    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
16    4390873    rs73507245    A    G    1117.87    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.0876;MQ=59.42;MQ0=0;MQRankSum=-1.496;QD=14.15;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262366    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1148,0,1130
16    4391040    rs2072151    T    C    547.73    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.45;DB;DP=36;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=1.7465;MQ=57.39;MQ0=0;MQRankSum=0.683;QD=15.21;ReadPosRankSum=0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLIS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262366    GT:AD:DP:GQ:PL    0/1:15,21:36:99:578,0,447
16    4408267    rs12448148    A    G    70.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.573;QD=7.85;ReadPosRankSum=-1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423908    GT:AD:DP:GQ:PL    0/1:6,3:9:99:101,0,177
16    4410243    rs28597097    T    G    344.75    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=17;Dels=0.0;FS=2.694;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.58;QD=20.28;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423908    GT:AD:DP:GQ:PL    0/1:5,12:17:99:375,0,154
16    4410374    rs58057409    T    C    312.71    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=15.64;ReadPosRankSum=0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423908    GT:AD:DP:GQ:PL    0/1:9,11:20:99:343,0,284
16    4411506    rs2277853    A    G    114.33    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DB;DP=22;Dels=0.0;FS=3.183;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.111;QD=5.2;ReadPosRankSum=-1.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251166    GT:AD:DP:GQ:PL    0/1:16,6:22:99:144,0,520
16    4431202    rs758044    A    G    464.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_AMINO_ACID_CHANGE=T108;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4430870_4433529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304735    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:498,39,0
16    4432029    rs3810818    A    C    82.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.59;SNPEFF_AMINO_ACID_CHANGE=E384A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4430870_4433529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304735    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:115,9,0
16    4445327    rs3747579    C    T    485.23    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=3.189;DB;DP=41;Dels=0.0;FS=1.298;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=11.83;ReadPosRankSum=-1.098;SNPEFF_AMINO_ACID_CHANGE=R108Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4445290_4445340;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537233    GT:AD:DP:GQ:PL    0/1:24,17:41:99:515,0,652
16    4455597    rs142375319    C    T    140.59    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.717;QD=11.72;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251166    GT:AD:DP:GQ:PL    0/1:5,7:12:99:171,0,151
16    4455675    rs3747580    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251166    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    4457907    rs3761679    C    G    101.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251166    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:134,12,0
16    4475868    rs2304631    A    T    79.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.43;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_4475806_4476093;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262375    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
16    4476089    rs1139652    T    C    344.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=Y33H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4475866_4476093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431375    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:377,27,0
16    4484328    rs4785962    A    G    266.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.283;DB;DP=22;Dels=0.0;FS=3.222;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.525;QD=12.12;ReadPosRankSum=-1.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262375    GT:AD:DP:GQ:PL    0/1:11,11:22:99:297,0,322
16    4484396    rs4785963    A    T    700.10    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.055;DB;DP=54;Dels=0.0;FS=7.26;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=1.013;QD=12.96;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=N75Y;SNPEFF_CODON_CHANGE=Aac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4484385_4484518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262375    GT:AD:DP:GQ:PL    0/1:31,23:54:99:730,0,869
16    4484613    rs4785964    A    G    1276.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262375    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1309,102,0
16    4494549    rs12446640    A    G    110.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.39;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262375    GT:AD:DP:GQ:PL    0/1:2,4:6:56.94:140,0,57
16    4496973    rs2304633    T    A    315.63    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.205;QD=10.52;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G208;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4496887_4497015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431375    GT:AD:DP:GQ:PL    0/1:19,11:30:99:346,0,572
16    4497199    rs6500601    G    C    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262375    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    4505331    rs1861652    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262375    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    4511752    rs7191458    T    C    592.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=52;Dels=0.0;FS=1.866;HRun=4;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.156;QD=11.39;ReadPosRankSum=0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262375    GT:AD:DP:GQ:PL    0/1:28,24:52:99:622,0,885
16    4516092    rs3747584    T    C    446.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMRAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283429    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:479,36,0
16    4519140    rs3747585    C    G    790.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMRAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283429    GT:AD:DP:GQ:PL    1/1:0,23:23:66.18:824,66,0
16    4519548    rs62039231    A    G    749.68    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.178;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6598;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=15.95;ReadPosRankSum=0.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMRAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283429    GT:AD:DP:GQ:PL    0/1:22,24:47:99:780,0,688
16    4519586    rs11862204    G    A    344.27    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.751;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.609;QD=13.24;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMRAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283429    GT:AD:DP:GQ:PL    0/1:15,11:26:99:374,0,542
16    4524060    rs3761680    C    A    196.13    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=16.34;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMRAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283429    GT:AD:DP:GQ:PL    0/1:5,7:12:99:226,0,164
16    4524155    rs17137053    C    G    210.45    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=21;Dels=0.0;FS=7.474;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.567;QD=10.02;ReadPosRankSum=0.265;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219700    GT:AD:DP:GQ:PL    0/1:10,11:21:99:240,0,330
16    4556911    rs25685    G    A    2925.83    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=6.397;DB;DP=201;Dels=0.0;FS=8.568;HRun=0;HaplotypeScore=2.6204;MQ=59.89;MQ0=0;MQRankSum=0.392;QD=14.56;ReadPosRankSum=-0.795;SNPEFF_AMINO_ACID_CHANGE=S34;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4556896_4557013;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMOX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219700    GT:AD:DP:GQ:PL    0/1:99,102:201:99:2956,0,2756
16    4562351    rs8129    T    C    213.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219700    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:246,18,0
16    4562512    rs7665    A    G    427.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=26.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219700    GT:AD:DP:GQ:PL    1/1:0,16:16:39.10:460,39,0
16    4621725    rs35531180    GA    G    713.31    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=3.323;DB;DP=29;FS=6.575;HRun=1;HaplotypeScore=84.4325;IndelType=D;MQ=59.58;MQ0=0;MQRankSum=-0.778;QD=24.6;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444310    GT:AD:DP:GQ:PL    0/1:10,19:29:99:752,0,345
16    4624892    rs9922925    C    T    388.68    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.272;DB;DP=19;Dels=0.0;FS=4.931;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.395;QD=20.46;ReadPosRankSum=-0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444310    GT:AD:DP:GQ:PL    0/1:6,13:19:99:419,0,182
16    4625126    rs9673241    G    A    124.22    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=17.75;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444310    GT:AD:DP:GQ:PL    0/1:2,5:7:58.50:154,0,59
16    4660342    rs841184    C    T    127.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM100A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283474    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
16    4664833    rs860889    T    G    126.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.25;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_4664679_4664927;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM100A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283474    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:159,15,0
16    4675280    rs56268873    T    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
16    4700318    .    CA    C    54.14    QDFilter2    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DP=31;FS=0.0;HRun=18;HaplotypeScore=198.2621;IndelType=D;MQ=50.32;MQ0=0;MQRankSum=1.466;QD=1.75;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    0/1:18,11:31:93.17:93,0,117
16    4714639    rs1659479    T    C    926.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:959,72,0
16    4715012    rs3813746    C    T    704.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:738,57,0
16    4718388    rs34069734    A    G    255.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
16    4721468    rs715109    T    C    897.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    1/1:0,31:31:72.21:930,72,0
16    4723451    rs2289314    A    G    3832.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.0;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    1/1:0,114:116:99:3832,292,0
16    4723552    .    C    T    1691.55    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=3.05;DP=125;Dels=0.0;FS=2.601;HRun=0;HaplotypeScore=1.6584;MQ=59.07;MQ0=0;MQRankSum=-1.05;QD=13.53;ReadPosRankSum=1.979;SNPEFF_AMINO_ACID_CHANGE=S283;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4723499_4723658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    0/1:64,61:125:99:1722,0,1494
16    4736316    rs841225    C    T    429.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;QD=28.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGRN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262370    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:462,36,0
16    4747136    rs841215    G    C    490.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450067    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:524,42,0
16    4748825    rs841214    C    T    890.02    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DB;DP=61;Dels=0.0;FS=2.171;HRun=1;HaplotypeScore=0.9832;MQ=58.86;MQ0=0;MQRankSum=2.0;QD=14.59;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=Q380;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4748801_4748942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446014    GT:AD:DP:GQ:PL    0/1:29,32:61:99:920,0,844
16    4751045    rs863980    C    T    4132.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=A198T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4749755_4751135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450067    GT:AD:DP:GQ:PL    1/1:0,120:121:99:4132,316,0
16    4752134    rs841210    A    G    241.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.8;SNPEFF_AMINO_ACID_CHANGE=D120;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4752103_4752243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450067    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:274,21,0
16    4755278    .    G    A    368.01    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.888;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.775;QD=11.5;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304283    GT:AD:DP:GQ:PL    0/1:17,15:32:99:398,0,615
16    4780262    rs859302    G    A    127.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304283    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:160,15,0
16    4786281    rs703815    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299320    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
16    4786456    rs859314    A    G    644.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299320    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:678,51,0
16    4787987    rs859310    G    A    828.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299320    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:861,63,0
16    4790059    rs111697257    C    CA    401.06    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=35;FS=2.556;HRun=15;HaplotypeScore=280.671;IndelType=I;MQ=50.96;MQ0=0;MQRankSum=-1.03;QD=11.46;ReadPosRankSum=-1.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299320    GT:AD:DP:GQ:PL    0/1:16,16:35:0.07:438,0,0
16    4790273    rs859305    G    A    3451.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.59;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=E132;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4790154_4790660;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf71;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299320    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3451,268,0
16    4794873    rs2075469    C    T    1461.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.46;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=R302C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4794871_4795012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299320    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1494,108,0
16    4796192    rs737697    T    C    94.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF500;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219478    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
16    4796393    rs737700    A    G    1091.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.31;SNPEFF_AMINO_ACID_CHANGE=Q109R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4796376_4796513;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411541    GT:AD:DP:GQ:PL    1/1:0,36:36:90.28:1124,90,0
16    4796595    rs759988    T    C    358.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=29.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF500;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219478    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:392,33,0
16    4796871    rs2341988    A    G    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF500;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219478    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    4797226    rs759989    T    C    875.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF500;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219478    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:908,66,0
16    4797457    rs17853375    C    T    1227.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.26;MQ0=0;QD=28.54;SNPEFF_AMINO_ACID_CHANGE=P220L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4797344_4797635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf71;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411541    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1260,102,0
16    4812209    rs12599765    G    A    246.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF500;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219478    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
16    4815425    rs4786548    T    C    520.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF500;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219478    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:554,42,0
16    4815501    rs12928542    G    C    568.08    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=38;Dels=0.0;FS=3.497;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=-0.979;QD=14.95;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF500;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219478    GT:AD:DP:GQ:PL    0/1:18,20:38:99:598,0,565
16    4815608    rs4786549    A    G    1833.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_AMINO_ACID_CHANGE=L124;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4815566_4816077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF500;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219478    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1866,147,0
16    4829602    rs79848476    T    C    650.46    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=15.49;ReadPosRankSum=0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268231    GT:AD:DP:GQ:PL    0/1:19,22:42:99:680,0,640
16    4829684    rs72771910    C    T    1143.73    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.926;DB;DP=101;Dels=0.0;FS=0.798;HRun=0;HaplotypeScore=6.6381;MQ=58.95;MQ0=0;MQRankSum=-0.053;QD=11.21;ReadPosRankSum=0.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268231    GT:AD:DP:GQ:PL    0/1:57,44:101:99:1174,0,1719
16    4861709    rs2085329    G    C    676.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_AMINO_ACID_CHANGE=H378Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4861624_4861803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436648    GT:AD:DP:GQ:PL    1/1:0,23:23:54.15:709,54,0
16    4882425    rs146064211    C    T    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321919    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:70,0,30
16    4926726    rs2660226    G    A    397.70    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=0.942;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.807;QD=24.86;ReadPosRankSum=0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262376    GT:AD:DP:GQ:PL    0/1:3,13:16:76.74:428,0,77
16    4933301    rs2734732    A    T    422.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262376    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:456,33,0
16    4933409    rs116861592    C    G    327.56    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=19;Dels=0.0;FS=2.515;HRun=1;HaplotypeScore=2.9677;MQ=57.02;MQ0=0;MQRankSum=0.793;QD=17.24;ReadPosRankSum=0.34;SNPEFF_AMINO_ACID_CHANGE=A1749;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4932508_4936048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    0/1:7,11:19:99:358,0,110
16    4933939    rs2037912    G    C    2040.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=Q1573E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4932508_4936048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2073,159,0
16    4934549    rs1049208    G    A    4065.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=S1369;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4932508_4936048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,116:117:99:4066,307,0
16    4934564    rs1049207    C    G    4595.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=L1364;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4932508_4936048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,143:144:99:4595,349,0
16    4937339    rs2660238    A    G    475.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.866;MQ=56.62;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262376    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:508,39,0
16    4937909    rs2734743    T    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    4938160    rs2734742    T    G    1611.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=R819S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4938103_4938219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1644,123,0
16    4938280    rs2075637    T    C    944.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:977,72,0
16    4938321    rs2075636    A    T    563.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:596,45,0
16    4938335    rs55849185    T    G    185.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=15.44;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    0/1:6,6:12:99:215,0,196
16    4938758    rs2660239    T    A    287.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=26.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:320,24,0
16    4939232    rs71139659    TG    T    203.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=119.3538;IndelType=D;MQ=39.1;MQ0=0;QD=20.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:1,9:10:29.76:246,30,0
16    4940387    rs11644917    G    A    371.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:404,33,0
16    4940809    rs2471844    A    G    748.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=C694;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4940729_4940922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,24:24:60.15:781,60,0
16    4941662    rs11076855    T    C    380.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:414,30,0
16    4942099    rs1049205    C    T    978.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=R589Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4942036_4942214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:1012,75,0
16    4944270    rs2734734    A    G    115.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
16    4944303    rs2734733    A    G    152.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=25.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:186,15,0
16    4944518    rs1876363    C    G    1464.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=V448;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_4944468_4944619;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1498,111,0
16    4945221    rs12709119    A    G    528.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:561,45,0
16    4947534    rs8051246    T    C    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
16    4948936    rs12443906    C    T    169.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
16    4949137    rs55735519    G    A    512.76    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.399;DB;DP=33;Dels=0.0;FS=1.446;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.425;QD=15.54;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    0/1:14,19:33:99:543,0,394
16    4952598    rs2048098    C    G    595.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7335;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=24.8;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:1,23:24:12.59:628,13,0
16    4952627    rs79655418    A    G    128.51    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.63;MQ0=0;MQRankSum=0.34;QD=7.56;ReadPosRankSum=-0.906;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    0/1:12,5:17:99:159,0,361
16    4961003    rs8057613    A    G    411.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345988    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:444,33,0
16    5040717    rs3743845    C    T    150.73    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.011;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.475;QD=7.18;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    0/1:13,7:21:99:181,0,413
16    5041778    rs2972265    T    C    55.16    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=6.89;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    0/1:4,3:8:85.15:85,0,127
16    5046787    rs2270260    G    C    341.11    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.99;MQ0=0;MQRankSum=-0.341;QD=14.83;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    0/1:10,13:23:99:371,0,336
16    5050897    rs2286966    G    C    70.04    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=58.55;MQ0=0;MQRankSum=0.453;QD=4.38;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=G367;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5050856_5050926;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    0/1:11,5:16:99:100,0,362
16    5056122    rs2302555    C    T    205.08    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.355;DB;DP=19;Dels=0.0;FS=2.058;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;MQRankSum=1.63;QD=10.79;ReadPosRankSum=2.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    0/1:11,8:19:99:235,0,298
16    5056153    rs2302554    G    T    95.74    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=8.7;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    0/1:6,5:11:99:126,0,213
16    5058271    rs7198316    C    G    137.91    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.322;QD=17.24;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    0/1:3,5:8:99:168,0,103
16    5058791    rs3743842    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
16    5061085    rs2908669    A    C    423.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:457,33,0
16    5064917    rs2012649    C    T    1071.29    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=15.75;ReadPosRankSum=-1.451;SNPEFF_AMINO_ACID_CHANGE=A679;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5064860_5069156;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251170    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1101,0,760
16    5075246    rs2937113    C    G    80.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.01;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312251    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:113,12,0
16    5075542    rs887854    G    A    1128.58    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.007;DB;DP=66;Dels=0.0;FS=1.189;HRun=0;HaplotypeScore=0.9958;MQ=58.95;MQ0=0;MQRankSum=-0.201;QD=17.1;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=N461;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5074873_5075686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381955    GT:AD:DP:GQ:PL    0/1:31,35:66:99:1159,0,807
16    5075557    rs139512285    C    T    553.01    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.69;DB;DP=60;Dels=0.0;FS=1.305;HRun=0;HaplotypeScore=2.8271;MQ=58.84;MQ0=0;MQRankSum=1.979;QD=9.22;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=P456;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5074873_5075686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381955    GT:AD:DP:GQ:PL    0/1:33,27:60:99:583,0,918
16    5075633    rs7188856    G    A    360.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=27;Dels=0.0;FS=3.123;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.122;QD=13.36;ReadPosRankSum=-0.415;SNPEFF_AMINO_ACID_CHANGE=T431I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5074873_5075686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGPA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381955    GT:AD:DP:GQ:PL    0/1:15,12:27:99:391,0,530
16    5078622    rs62036221    C    A    67.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312251    GT:AD:DP:GQ:PL    0/1:2,3:5:65.29:97,0,65
16    5078841    rs1995278    T    C    3687.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8216;MQ=59.45;MQ0=0;QD=30.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312251    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3687,283,0
16    5083483    rs2972272    T    C    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.5;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G111;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5083274_5083729;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312251    GT:AD:DP:GQ:PL    0/1:2,2:4:55.64:68,0,56
16    5094191    rs8057204    T    C    118.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C16orf89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525830    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
16    5097947    rs1127920    A    G    396.86    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9913;MQ=60.0;MQ0=0;MQRankSum=-1.25;QD=20.89;ReadPosRankSum=-1.898;SNPEFF_AMINO_ACID_CHANGE=L296S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5097879_5097965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C16orf89;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000472572    GT:AD:DP:GQ:PL    0/1:5,14:19:99:427,0,158
16    5105440    rs741166    T    C    35.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=55.21;MQ0=0;MQRankSum=1.026;QD=7.17;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C16orf89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471525    GT:AD:DP:GQ:PL    0/1:2,3:5:65.59:66,0,66
16    5106184    rs741164    C    T    109.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=6.84;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=G211;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5106054_5106189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C16orf89;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315997    GT:AD:DP:GQ:PL    0/1:10,6:16:99:139,0,328
16    5122768    rs8050532    T    G    152.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:186,15,0
16    5122784    rs8045473    C    G    67.39    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.63;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    0/1:4,3:7:97.38:97,0,148
16    5125365    rs4786590    C    T    2485.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2401;MQ=59.69;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2519,193,0
16    5127335    rs11076869    T    A    533.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:567,42,0
16    5127721    rs2302552    G    T    242.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
16    5127853    rs7194217    G    A    1650.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.4;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1683,129,0
16    5128647    rs2110339    T    C    656.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.88;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,20:20:57.14:689,57,0
16    5128981    rs1846690    G    A    390    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.18;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:423,33,0
16    5128995    rs1846689    C    T    354.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.18;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:387,30,0
16    5129174    rs1846688    C    T    184.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.05;MQ0=0;QD=26.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:1,6:7:18.05:218,18,0
16    5132636    rs1047732    C    T    1758.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.42;MQ0=0;QD=32.57;SNPEFF_AMINO_ACID_CHANGE=F272;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5132560_5132674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544428    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1792,135,0
16    5133606    rs8056523    G    T    591.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.85;MQ0=0;QD=28.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:625,48,0
16    5135947    rs4483845    C    G    155.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.45;MQ0=0;QD=31.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262374    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:188,15,0
16    5139186    rs12928528    G    C    1428.36    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=4.056;DB;DP=94;Dels=0.0;FS=4.078;HRun=1;HaplotypeScore=0.8667;MQ=58.41;MQ0=0;MQRankSum=-0.374;QD=15.2;ReadPosRankSum=0.957;SNPEFF_AMINO_ACID_CHANGE=H238D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5139108_5139257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458008    GT:AD:DP:GQ:PL    0/1:43,51:94:99:1458,0,1156
16    5139217    rs9745857    C    G    2622.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.16;MQ0=0;QD=28.51;SNPEFF_AMINO_ACID_CHANGE=G227;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_5139108_5139257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458008    GT:AD:DP:GQ:PL    1/1:0,90:92:99:2656,217,0
16    5141588    rs7192972    G    A    69.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.66;MQ0=0;QD=23.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:101,9,0
16    5143603    rs147567393    C    T    1122.38    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=5.831;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8675;MQ=47.5;MQ0=5;MQRankSum=2.007;QD=11.11;ReadPosRankSum=-0.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    0/1:60,41:101:99:1152,0,1341
16    5143629    rs148035692    G    A    1040.43    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.056;DB;DP=73;Dels=0.0;FS=2.967;HRun=2;HaplotypeScore=1.9598;MQ=46.24;MQ0=4;MQRankSum=-1.168;QD=14.25;ReadPosRankSum=1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    0/1:34,39:73:99:1070,0,888
16    5143647    rs35736978    A    G    883.01    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=44.36;MQ0=3;MQRankSum=-0.287;QD=16.05;ReadPosRankSum=-0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    0/1:25,30:55:99:913,0,617
16    5143662    rs142461963    C    T    481.76    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.731;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6545;MQ=44.05;MQ0=2;MQRankSum=0.72;QD=10.04;ReadPosRankSum=1.806;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    0/1:28,20:48:99:512,0,680
16    5143737    rs9746353    T    C    263.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.34;MQ0=0;QD=23.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    1/1:0,11:11:30:296,30,0
16    5145744    rs9673518    C    T    123.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.27;MQ0=0;QD=20.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:156,12,0
16    5145753    rs9673486    G    A    120.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.27;MQ0=0;QD=20.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:153,12,0
16    5145783    rs79576050    C    G    107.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.5;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM86A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427587    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
16    5313349    rs2178182    C    G    8720.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8255;MQ=59.22;MQ0=0;QD=34.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC074051.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408882    GT:AD:DP:GQ:PL    1/1:0,249:250:99:8720,653,0
16    7101976    rs10500344    T    A    137.82    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.044;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.219;QD=7.25;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422070    GT:AD:DP:GQ:PL    0/1:13,6:19:99:168,0,472
16    7657373    rs1507010    A    G    795.36    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.069;DB;DP=59;Dels=0.0;FS=6.082;HRun=1;HaplotypeScore=1.581;MQ=59.37;MQ0=0;MQRankSum=-0.344;QD=13.48;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311745    GT:AD:DP:GQ:PL    0/1:33,26:59:99:825,0,991
16    7657432    rs4616299    A    G    325.57    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=13.02;ReadPosRankSum=0.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311745    GT:AD:DP:GQ:PL    0/1:13,12:25:99:356,0,464
16    7704032    rs2302216    T    C    33.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547605    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
16    7715108    rs8064206    T    C    783.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311745    GT:AD:DP:GQ:PL    1/1:0,23:23:69.19:816,69,0
16    7726691    rs2191134    A    G    662.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311745    GT:AD:DP:GQ:PL    1/1:0,22:22:63.14:696,63,0
16    7759164    rs7196923    T    C    796.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311745    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:830,66,0
16    7759206    rs62011897    G    T    340.23    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.579;QD=28.35;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311745    GT:AD:DP:GQ:PL    0/1:1,11:12:8.12:370,0,8
16    7760846    rs5815427    T    TA    128.81    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=18;FS=0.0;HRun=14;HaplotypeScore=70.7423;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=7.16;ReadPosRankSum=-1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422070    GT:AD:DP:GQ:PL    0/1:10,8:18:57.33:168,0,57
16    8719385    rs3180118    T    C    37.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=5.42;ReadPosRankSum=0.55;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_8719353_8719655;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:4,3:7:67.94:68,0,140
16    8719738    rs62019681    G    A    264.58    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.411;QD=10.58;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:14,11:25:99:295,0,502
16    8728671    rs1641039    A    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
16    8728764    rs11866607    C    G    79.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=13.31;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:3,3:6:70.50:110,0,70
16    8728772    rs1731045    C    T    232.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:266,21,0
16    8728953    rs1731044    C    T    1027.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,37:38:78.25:1060,78,0
16    8729011    rs116928307    C    T    462.39    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=33;Dels=0.0;FS=5.632;HRun=1;HaplotypeScore=0.0;MQ=57.15;MQ0=0;MQRankSum=-0.774;QD=14.01;ReadPosRankSum=1.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:16,17:33:99:492,0,469
16    8729124    rs2302607    G    A    62.09    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.213;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=0.894;QD=2.82;ReadPosRankSum=-0.468;SNPEFF_AMINO_ACID_CHANGE=A219T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_8729025_8729169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381920    GT:AD:DP:GQ:PL    0/1:18,4:22:92.09:92,0,508
16    8729254    rs3108687    C    A    247.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
16    8729275    rs1641040    T    C    89.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:122,9,0
16    8729323    rs1731043    A    T    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
16    8729356    rs1641041    C    G    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    8732882    rs5815485    CA    C    537.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=6;HaplotypeScore=92.169;IndelType=D;MQ=50.98;MQ0=0;QD=29.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:579,54,0
16    8733071    rs1641048    A    G    577.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:610,48,0
16    8733154    rs1641049    G    A    200.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
16    8733200    rs1641050    G    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    8735120    rs8062990    T    C    197.09    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.099;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=12.32;ReadPosRankSum=0.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:9,7:16:99:227,0,245
16    8735200    rs8045911    G    A    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.12;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,110
16    8735212    rs1629322    T    C    108.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:141,12,0
16    8735813    rs4985091    G    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:73,0,26
16    8736028    rs1614616    T    C    1483.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.748;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_AMINO_ACID_CHANGE=L291;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_8735984_8736064;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381920    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1517,114,0
16    8736150    rs1615559    A    C    1044.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,30:30:84.26:1078,84,0
16    8736246    rs1731007    G    A    3446.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.49;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3447,259,0
16    8736499    rs1618219    C    T    1557.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=37.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1591,120,0
16    8738194    rs1641064    G    A    485.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:518,39,0
16    8738213    rs12934921    G    C    474.70    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=57.39;MQ0=0;MQRankSum=-0.123;QD=17.58;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:11,16:27:99:505,0,341
16    8738350    rs11645418    C    T    2103.64    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.97;DB;DP=190;Dels=0.0;FS=4.016;HRun=0;HaplotypeScore=3.838;MQ=59.71;MQ0=0;MQRankSum=-0.192;QD=11.07;ReadPosRankSum=-0.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    0/1:106,82:190:99:2134,0,3513
16    8738398    rs1641065    A    G    7898.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=236;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,236:236:99:7899,584,0
16    8738427    rs1641066    T    C    7799.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=235;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.203;MQ=59.57;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=L342;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_8738414_8738582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381920    GT:AD:DP:GQ:PL    1/1:2,233:235:99:7799,584,0
16    8738499    rs1731000    G    A    4445.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=34.19;SNPEFF_AMINO_ACID_CHANGE=A366T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_8738414_8738582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381920    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4445,349,0
16    8738579    rs1641067    A    G    1708.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=Q392;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_8738414_8738582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381920    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1742,132,0
16    8738622    rs9933132    C    T    647.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.28;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:680,51,0
16    8738641    rs1730999    A    G    319.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.69;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:352,27,0
16    8738708    rs1730998    C    T    70.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
16    8739843    .    C    CCTTGCCTGCTCCGTGGCTGACGTGTTGTCTAACTACTCTCCTT    1729.15    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=240.1768;IndelType=I;MQ=44.22;MQ0=0;QD=216.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:3,1:8:18.06:1771,18,0
16    8739954    rs1641070    G    A    1309.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.26;MQ0=0;QD=30.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1343,102,0
16    8740015    rs1730994    A    C    1116.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=27.91;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000163678    GT:AD:DP:GQ:PL    1/1:0,40:40:84.28:1150,84,0
16    8839954    rs1731017    A    G    1136.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=Q56R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_8839858_8839955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,35:35:90.28:1169,90,0
16    8840025    rs2103340    C    T    541.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:575,42,0
16    8841794    rs753071    T    G    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
16    8841960    rs1641010    T    C    1427.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1461,111,0
16    8842128    rs1641011    T    A    289.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
16    8842154    rs1731036    A    G    208.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
16    8851767    rs12930438    C    T    182.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:215,18,0
16    8858580    rs2302608    T    A    1516.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.51;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1549,126,0
16    8862212    rs8049072    C    T    313.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:346,27,0
16    8862232    rs33948976    CA    C    251.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=55.1855;IndelType=D;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
16    8862271    rs8053509    G    T    117.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
16    8862296    rs8057362    A    G    125.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
16    8862506    rs1273406    C    A    1290.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1324,102,0
16    8862592    rs1273407    T    C    3842.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3843,286,0
16    8862956    rs3815508    G    T    252.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:285,21,0
16    8863058    rs79725896    C    T    68.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
16    8875046    rs71398454    TGATG    T    2230.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=0;HaplotypeScore=307.8224;IndelType=D;MQ=62.08;MQ0=0;QD=38.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268251    GT:AD:DP:GQ:PL    1/1:9,49:58:99:2272,141,0
16    8889628    rs12049    T    C    558.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268261    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:591,48,0
16    8905054    rs11074924    T    C    262.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268261    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:296,24,0
16    8907145    rs9924186    G    T    392.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268261    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:425,33,0
16    8948974    rs6898    T    C    392.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARHSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311052    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:426,33,0
16    8952113    rs62033507    C    A    160.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARHSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311052    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
16    8952248    rs988065    A    G    598.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_AMINO_ACID_CHANGE=T80;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_8952207_8952329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARHSP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311052    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:631,48,0
16    8953081    rs8097    C    G    304.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.38;SNPEFF_AMINO_ACID_CHANGE=R35;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_8953028_8953192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARHSP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311052    GT:AD:DP:GQ:PL    1/1:0,12:12:27.07:338,27,0
16    8979046    rs40398    A    G    349.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:382,30,0
16    8979146    rs112773706    C    T    445    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.332;DB;DP=33;Dels=0.0;FS=1.356;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.63;QD=13.48;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,17:33:99:475,0,540
16    8979335    rs56093217    C    CCATA    417.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=35.1678;IndelType=I;MQ=50.65;MQ0=0;MQRankSum=-1.067;QD=52.18;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,6:8:87.95:456,0,88
16    8988238    rs1677472    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544549    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    8988386    rs71155414    CG    C    183.02    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.879;DB;DP=18;FS=0.0;HRun=9;HaplotypeScore=99.5185;IndelType=D;MQ=61.12;MQ0=0;MQRankSum=0.342;QD=10.17;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544549    GT:AD:DP:GQ:PL    0/1:3,10:18:52.26:222,0,52
16    8988777    rs2304467    C    G    332.96    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.35;DB;DP=33;Dels=0.0;FS=7.731;HRun=2;HaplotypeScore=0.9734;MQ=59.3;MQ0=0;MQRankSum=0.239;QD=10.09;ReadPosRankSum=1.013;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544549    GT:AD:DP:GQ:PL    0/1:20,13:33:99:363,0,693
16    8989042    rs79003022    T    A    2236.20    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.591;DB;DP=131;Dels=0.0;FS=1.053;HRun=0;HaplotypeScore=1.367;MQ=59.08;MQ0=0;MQRankSum=0.707;QD=17.07;ReadPosRankSum=0.343;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:63,68:131:99:2266,0,1921
16    8989403    rs1677473    A    G    317.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:351,27,0
16    8990680    rs2257181    C    A    119.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=11.95;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:4,6:10:99:149,0,128
16    8992342    rs2304465    G    A    1669.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.542;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8255;MQ=59.79;MQ0=0;MQRankSum=0.028;QD=15.46;ReadPosRankSum=-0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542333    GT:AD:DP:GQ:PL    0/1:54,54:108:99:1699,0,1740
16    8992828    rs2289109    G    T    363.33    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=19.12;ReadPosRankSum=0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542333    GT:AD:DP:GQ:PL    0/1:8,11:19:99:393,0,272
16    8994325    rs74483636    C    T    234.93    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=17;Dels=0.0;FS=3.274;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=13.82;ReadPosRankSum=-0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542333    GT:AD:DP:GQ:PL    0/1:9,8:17:99:265,0,280
16    8994563    rs2447919    C    T    173.95    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.38;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542333    GT:AD:DP:GQ:PL    0/1:7,6:13:99:204,0,253
16    8995927    rs2304466    G    A    631.48    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=2.975;DB;DP=66;Dels=0.0;FS=4.172;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.686;QD=9.57;ReadPosRankSum=0.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542333    GT:AD:DP:GQ:PL    0/1:40,26:66:99:661,0,1069
16    8996377    rs2447918    C    T    50.55    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=2.335;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.467;QD=3.61;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:11,3:14:80.54:81,0,343
16    8996838    rs4985011    A    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
16    8998571    rs2437727    G    C    108.93    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.9866;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=13.62;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:2,5:8:62.94:139,0,63
16    9004564    rs2447916    C    A    380.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:413,33,0
16    9010091    rs2447913    C    A    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
16    9010213    rs7195624    T    G    239.19    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=20;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=1.975;QD=11.96;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:11,9:20:99:269,0,354
16    9010260    rs141752211    ATTTTCTGAATTAGGTC    A    1661.91    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=4.247;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=513.2052;IndelType=D;MQ=51.54;MQ0=0;MQRankSum=-4.247;QD=43.73;ReadPosRankSum=2.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:26,12:38:99:1701,0,5341
16    9010446    rs57510291    A    AC    4064.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;FS=0.0;HRun=0;HaplotypeScore=180.954;IndelType=I;MQ=59.14;MQ0=0;QD=46.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:0,87:87:99:4064,259,0
16    9010826    rs34357840    T    TA    256.17    PASS    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=2.315;DB;DP=61;FS=0.0;HRun=17;HaplotypeScore=579.9903;IndelType=I;MQ=50.81;MQ0=0;MQRankSum=-2.764;QD=4.2;ReadPosRankSum=-2.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:36,11:61:41.86:295,0,42
16    9012686    rs12708738    G    A    140.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=15.66;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:3,6:9:99:171,0,100
16    9014350    rs1677470    T    C    1105.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:2,31:33:87.28:1139,87,0
16    9014385    rs7189170    G    A    144.80    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.78;MQ0=0;MQRankSum=-0.465;QD=7.62;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:12,7:19:99:175,0,412
16    9014434    rs2447912    T    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    9014928    rs42554    C    G    259.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
16    9015252    rs30761    A    T    553.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:586,45,0
16    9015258    rs9940652    T    C    76.08    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=5.43;ReadPosRankSum=1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    0/1:10,4:14:99:106,0,329
16    9030196    rs1622768    G    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344836    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    9030444    rs1382390    C    G    2500.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=28.74;SNPEFF_AMINO_ACID_CHANGE=L33;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_9030440_9030586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381886    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2534,202,0
16    9186735    rs4630540    C    G    56.66    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=48.43;MQ0=0;MQRankSum=1.034;QD=5.15;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327827    GT:AD:DP:GQ:PL    0/1:7,4:11:86.65:87,0,220
16    9210373    rs8045589    A    T    651.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327827    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:684,54,0
16    9250260    rs12929693    T    G    183.94    MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.056;DB;DP=19;Dels=0.0;FS=13.919;HRun=0;HaplotypeScore=0.8321;MQ=38.2;MQ0=0;MQRankSum=-2.578;QD=9.68;ReadPosRankSum=-0.042;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-473I1.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403916    GT:AD:DP:GQ:PL    0/1:7,12:19:99:214,0,192
16    9862556    rs11866328    G    T    771.56    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.557;DB;DP=52;Dels=0.0;FS=3.082;HRun=0;HaplotypeScore=0.9993;MQ=59.11;MQ0=0;MQRankSum=0.179;QD=14.84;ReadPosRankSum=0.878;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330684    GT:AD:DP:GQ:PL    0/1:27,25:52:99:802,0,889
16    10524656    rs78023765    GGAC    G    774.31    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=5.112;DB;DP=69;FS=7.434;HRun=0;HaplotypeScore=259.3305;IndelType=D;MQ=58.38;MQ0=0;MQRankSum=-2.176;QD=11.22;ReadPosRankSum=0.489;SNPEFF_AMINO_ACID_CHANGE=RT60R;SNPEFF_CODON_CHANGE=aggacg/agg;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_16_10524478_10525312;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7IP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324570    GT:AD:DP:GQ:PL    0/1:49,20:69:99:813,0,2643
16    10527174    rs7203570    G    A    129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324570    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
16    10532211    rs1532824    A    C    38.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.573;QD=3.85;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324570    GT:AD:DP:GQ:PL    0/1:6,4:10:68.45:68,0,206
16    10566146    rs4453490    G    T    193.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.406;QD=13.79;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324570    GT:AD:DP:GQ:PL    0/1:7,7:14:99:223,0,245
16    10574829    rs12596111    A    T    1585.59    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=3.348;DB;DP=115;Dels=0.0;FS=6.111;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.261;QD=13.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324570    GT:AD:DP:GQ:PL    0/1:61,54:115:99:1616,0,1895
16    10575824    rs1970817    C    A    1030.01    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.403;DB;DP=86;Dels=0.0;FS=13.538;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.041;QD=11.98;ReadPosRankSum=-0.887;SNPEFF_AMINO_ACID_CHANGE=P133;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_10575693_10576343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF7IP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543967    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1060,0,1595
16    10625887    rs7195563    C    T    78.95    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=11;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.365;QD=7.18;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536829    GT:AD:DP:GQ:PL    0/1:7,4:11:99:109,0,221
16    10625997    rs7194566    G    A    185.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536829    GT:AD:DP:GQ:PL    1/1:0,9:9:18.04:218,18,0
16    10626059    rs148189744    AG    A    101.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;FS=0.0;HRun=9;HaplotypeScore=46.0137;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=1.067;QD=12.72;ReadPosRankSum=1.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536829    GT:AD:DP:GQ:PL    0/1:2,6:8:45.21:141,0,45
16    10626122    rs12928389    G    C    57.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.98;MQ0=0;MQRankSum=-0.896;QD=5.19;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536829    GT:AD:DP:GQ:PL    0/1:7,4:11:87.03:87,0,219
16    10627085    rs4780939    A    G    78.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.64;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359543    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:109,0,29
16    10631945    rs1504883    G    A    1361.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359543    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1394,111,0
16    10631985    rs1504884    T    C    616.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359543    GT:AD:DP:GQ:PL    1/1:0,24:24:57.13:650,57,0
16    10632129    rs2279869    T    C    82.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359543    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
16    10632213    rs2279870    C    T    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359543    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    10775822    rs10221070    G    T    526.73    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.591;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.039;QD=11.97;ReadPosRankSum=-1.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283025    GT:AD:DP:GQ:PL    0/1:24,20:44:99:557,0,798
16    10776063    rs10221071    G    T    297.79    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.345;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.553;QD=11.45;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283025    GT:AD:DP:GQ:PL    0/1:16,10:26:99:328,0,556
16    10783651    rs12597911    T    C    67.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.17;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283025    GT:AD:DP:GQ:PL    0/1:3,3:6:97.01:97,0,109
16    10783654    rs1344519    A    G    67.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.26;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283025    GT:AD:DP:GQ:PL    0/1:3,3:6:97.54:98,0,105
16    10783663    rs1344518    C    T    62.92    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.86;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283025    GT:AD:DP:GQ:PL    0/1:5,3:8:92.91:93,0,181
16    10787973    rs2541489    T    C    154.44    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=12.87;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283025    GT:AD:DP:GQ:PL    0/1:5,7:12:99:184,0,170
16    10788106    rs2251984    A    G    1968.02    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.456;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.274;QD=14.26;ReadPosRankSum=-0.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283025    GT:AD:DP:GQ:PL    0/1:58,80:138:99:1998,0,1753
16    10788129    rs2251985    G    T    2665.98    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.028;DB;DP=153;Dels=0.0;FS=0.646;HRun=0;HaplotypeScore=2.6934;MQ=59.24;MQ0=0;MQRankSum=0.788;QD=17.42;ReadPosRankSum=0.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283025    GT:AD:DP:GQ:PL    0/1:63,90:153:99:2696,0,1828
16    10852033    rs1092688    G    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456096    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
16    10855739    rs1084544    G    A    170.02    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=13.08;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299866    GT:AD:DP:GQ:PL    0/1:7,6:13:99:200,0,203
16    10861914    rs2233541    T    C    417.17    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.906;DB;DP=27;Dels=0.0;FS=3.736;HRun=0;HaplotypeScore=0.6651;MQ=59.14;MQ0=0;MQRankSum=1.868;QD=15.45;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456096    GT:AD:DP:GQ:PL    0/1:12,15:27:99:447,0,352
16    10862964    rs11716    A    G    562.51    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=1.647;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.333;QD=10.04;ReadPosRankSum=-0.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299866    GT:AD:DP:GQ:PL    0/1:33,23:56:99:593,0,924
16    10865359    rs8055601    T    C    184.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.48;ReadPosRankSum=-1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283027    GT:AD:DP:GQ:PL    0/1:4,6:10:99:215,0,138
16    10934114    rs7188603    T    C    601.49    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.393;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=59.05;MQ0=0;MQRankSum=0.308;QD=13.67;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,19:44:99:631,0,853
16    10935167    .    C    CT    659.20    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=4.721;DP=40;FS=13.466;HRun=1;HaplotypeScore=167.7863;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=0.424;QD=16.48;ReadPosRankSum=-0.219;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,19:40:99:698,0,709
16    10989374    rs11074937    C    T    365.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324288    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:398,30,0
16    10992715    rs6498121    T    G    600.43    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=3.101;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.86;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=15.4;ReadPosRankSum=0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324288    GT:AD:DP:GQ:PL    0/1:17,22:39:99:630,0,494
16    10995850    rs6498124    G    T    1640.84    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.186;DB;DP=132;Dels=0.0;FS=3.467;HRun=0;HaplotypeScore=4.7758;MQ=58.59;MQ0=0;MQRankSum=0.211;QD=12.43;ReadPosRankSum=1.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324288    GT:AD:DP:GQ:PL    0/1:72,60:132:99:1671,0,2077
16    10995933    rs8046121    A    G    3917.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9336;MQ=58.31;MQ0=0;QD=30.85;SNPEFF_AMINO_ACID_CHANGE=R174G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_10995895_10996041;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324288    GT:AD:DP:GQ:PL    1/1:0,127:127:99:3918,301,0
16    10996332    rs6498125    C    G    36.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324288    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
16    11002904    rs2228238    G    A    1062.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=36.63;SNPEFF_AMINO_ACID_CHANGE=T308;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11002840_11003044;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381835    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1095,81,0
16    11002927    rs7197779    A    G    882.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=30.44;SNPEFF_AMINO_ACID_CHANGE=Q316R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11002840_11003044;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381835    GT:AD:DP:GQ:PL    1/1:0,29:29:75.20:916,75,0
16    11003157    rs45481191    C    T    135.84    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=11.32;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388910    GT:AD:DP:GQ:PL    0/1:7,5:12:99:166,0,252
16    11004150    rs4781019    C    T    131.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388910    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
16    11009253    rs7500886    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324288    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    11010150    rs6498130    G    T    143.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324288    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:177,15,0
16    11015906    rs6498134    A    G    637.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIITA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324288    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:670,51,0
16    11056618    rs1700820    A    G    168.99    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=15.36;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409552    GT:AD:DP:GQ:PL    0/1:5,6:11:99:199,0,165
16    11065307    rs16957849    T    C    85.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=14.24;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409552    GT:AD:DP:GQ:PL    0/1:2,4:6:65.94:115,0,66
16    11219761    rs140162037    TC    T    611.52    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.051;DB;DP=69;FS=0.0;HRun=10;HaplotypeScore=504.9567;IndelType=D;MQ=50.67;MQ0=0;MQRankSum=4.21;QD=8.86;ReadPosRankSum=1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465491    GT:AD:DP:GQ:PL    0/1:34,35:69:99:651,0,569
16    11260522    rs10852331    A    C    120.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC16A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381822    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
16    11349403    rs27829    A    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOCS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332029    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    11362554    rs181695    T    C    132.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327157    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
16    11367195    rs35598356    G    C    124.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_AMINO_ACID_CHANGE=H86Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11367144_11367452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327157    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
16    11369855    rs2070923    G    T    173.62    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=57.23;MQ0=0;MQRankSum=0.34;QD=10.21;ReadPosRankSum=-0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312511    GT:AD:DP:GQ:PL    0/1:8,9:17:99:204,0,193
16    11369930    rs1646022    C    G    281.75    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=22;Dels=0.0;FS=4.32;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.122;QD=12.81;ReadPosRankSum=0.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312511    GT:AD:DP:GQ:PL    0/1:12,9:22:99:312,0,345
16    11374866    rs737008    G    T    2407.01    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.613;DB;DP=173;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7791;MQ=59.47;MQ0=0;MQRankSum=-0.04;QD=13.91;ReadPosRankSum=0.631;SNPEFF_AMINO_ACID_CHANGE=R47;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11374693_11374892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312511    GT:AD:DP:GQ:PL    0/1:94,79:173:99:2437,0,2437
16    11444403    rs2032929    T    C    172.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.75;MQ0=0;MQRankSum=-1.447;QD=15.68;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312499    GT:AD:DP:GQ:PL    0/1:4,6:11:99:203,0,125
16    11444430    rs2032930    T    G    206.50    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.9;MQ0=0;MQRankSum=-0.696;QD=15.88;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312499    GT:AD:DP:GQ:PL    0/1:5,8:13:99:236,0,162
16    11444454    rs112241429    GA    G    536.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=11;HaplotypeScore=175.6375;IndelType=D;MQ=59.52;MQ0=0;QD=19.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312499    GT:AD:DP:GQ:PL    1/1:2,24:28:74.21:579,74,0
16    11444469    rs2032931    C    T    519.30    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.551;DB;DP=33;Dels=0.0;FS=1.594;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=0.399;QD=15.74;ReadPosRankSum=-0.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312499    GT:AD:DP:GQ:PL    0/1:14,19:33:99:549,0,402
16    11444716    rs2032932    A    G    328.78    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.107;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-2.041;QD=27.4;ReadPosRankSum=-1.396;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RMI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312499    GT:AD:DP:GQ:PL    0/1:2,10:12:45.43:359,0,45
16    11540596    rs4359463    A    C    548.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:581,45,0
16    11540712    rs4500747    T    C    104.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=20.94;SNPEFF_AMINO_ACID_CHANGE=T472;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11540604_11540766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:137,12,0
16    11541685    rs4296278    A    G    167.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:200,15,0
16    11541896    rs4238608    G    A    294.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_AMINO_ACID_CHANGE=R419W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11541790_11541929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:327,24,0
16    11542006    rs4238609    A    G    265.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:299,24,0
16    11542071    rs4238610    A    G    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    11542087    rs4277362    C    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    11542894    rs4467099    C    T    243.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_AMINO_ACID_CHANGE=A368T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11542775_11542963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:277,21,0
16    11544673    rs12932948    G    A    518.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_AMINO_ACID_CHANGE=A275V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11544465_11544676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:551,42,0
16    11544741    rs6498192    G    A    86.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
16    11544824    rs6498194    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    11550619    rs72777209    G    A    116.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=55.69;MQ0=0;MQRankSum=-0.851;QD=11.69;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    0/1:5,5:10:99:147,0,175
16    11550979    rs4559925    C    T    42.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.63;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    0/1:2,2:4:22.52:73,0,23
16    11553842    rs7206698    G    C    460.24    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.431;DB;DP=24;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.656;QD=19.18;ReadPosRankSum=0.239;SNPEFF_AMINO_ACID_CHANGE=H183Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11553752_11553910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    0/1:9,15:24:99:490,0,258
16    11553883    rs35839588    C    G    213.12    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=24;Dels=0.0;FS=4.1;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.477;QD=8.88;ReadPosRankSum=1.133;SNPEFF_AMINO_ACID_CHANGE=G170R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11553752_11553910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    0/1:15,9:24:99:243,0,407
16    11554301    rs72777212    C    G    30.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=6.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    0/1:3,2:5:60.62:61,0,110
16    11554737    rs8046254    C    T    167.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:201,15,0
16    11554867    rs8050530    C    T    97.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=9.75;ReadPosRankSum=1.159;SNPEFF_AMINO_ACID_CHANGE=R100Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11554820_11554975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    0/1:4,6:10:99:127,0,125
16    11555016    rs6498202    C    G    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:73,6,0
16    11556121    rs4254342    A    G    114.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.88;SNPEFF_AMINO_ACID_CHANGE=A14;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11555973_11556159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC099489.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344649    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:147,12,0
16    11650325    rs3743582    G    A    90.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.951;QD=9.08;ReadPosRankSum=-1.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LITAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339430    GT:AD:DP:GQ:PL    0/1:5,5:10:99:121,0,168
16    11797719    rs8055787    G    A    331.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283033    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:364,27,0
16    11828018    rs4780398    A    G    757.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283033    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:791,60,0
16    11836508    rs3743588    G    A    163.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=P27S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11836333_11836648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283033    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
16    11836744    rs3743589    A    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283033    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
16    11850003    rs7198247    A    G    688.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:721,54,0
16    11852354    rs8743    A    C    1461.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=V787;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11852287_11852395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1495,114,0
16    11852555    rs1014279    C    G    92.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
16    11859341    rs7199993    A    G    1757.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.22;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1790,141,0
16    11861199    rs66892828    C    CT    407.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=26.5679;IndelType=I;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    1/1:2,10:12:30.10:450,30,0
16    11862376    rs71406290    G    GA    493.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DB;DP=35;FS=0.0;HRun=14;HaplotypeScore=247.7342;IndelType=I;MQ=55.92;MQ0=0;MQRankSum=-2.361;QD=14.09;ReadPosRankSum=0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    1/1:20,12:35:41.50:535,41,0
16    11862433    rs17234473    T    C    385.79    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.264;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.639;QD=20.3;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    0/1:6,13:19:99:416,0,199
16    11870137    rs77237326    T    TA    3511.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;DB;DP=115;FS=0.0;HRun=9;HaplotypeScore=274.333;IndelType=I;MQ=61.49;MQ0=0;MQRankSum=-0.706;QD=30.53;ReadPosRankSum=-0.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    1/1:8,107:115:99:3511,299,0
16    11870494    rs8054729    T    A    416.51    PASS    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=0.496;DB;DP=14;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.496;QD=29.75;ReadPosRankSum=0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    0/1:1,13:14:0.10:445,0,0
16    11873158    rs16958654    T    C    1242.50    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.73;DB;DP=114;Dels=0.0;FS=12.868;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=10.9;ReadPosRankSum=2.158;SNPEFF_AMINO_ACID_CHANGE=H57R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11873022_11873219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    0/1:65,49:114:99:1272,0,2060
16    11876203    rs1429077    T    C    971.77    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.996;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.28;MQ0=0;MQRankSum=0.399;QD=15.18;ReadPosRankSum=0.332;SNPEFF_AMINO_ACID_CHANGE=N3S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11876143_11876244;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355758    GT:AD:DP:GQ:PL    0/1:28,36:64:99:1002,0,832
16    11935436    rs2288547    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSL1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355674    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,72
16    11940390    rs8052900    T    C    1207.69    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8055;MQ=59.18;MQ0=0;MQRankSum=0.661;QD=16.32;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=T201;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11940358_11940459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSL1D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355674    GT:AD:DP:GQ:PL    0/1:33,41:74:99:1238,0,1076
16    11940764    rs1019814    T    C    1442.19    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.371;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5576;MQ=59.51;MQ0=0;MQRankSum=-1.934;QD=15.34;ReadPosRankSum=-1.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSL1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355674    GT:AD:DP:GQ:PL    0/1:45,47:94:99:1472,0,1423
16    11940829    rs1019813    C    T    511.77    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.441;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9889;MQ=60.0;MQ0=0;MQRankSum=0.774;QD=16.51;ReadPosRankSum=-0.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSL1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355674    GT:AD:DP:GQ:PL    0/1:14,17:31:99:542,0,445
16    11945231    rs2075158    T    C    322.12    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=36;Dels=0.0;FS=4.232;HRun=1;HaplotypeScore=0.8941;MQ=59.48;MQ0=0;MQRankSum=1.636;QD=8.95;ReadPosRankSum=1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSL1D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355674    GT:AD:DP:GQ:PL    0/1:21,15:36:99:352,0,711
16    11969724    rs33657    G    C    1285.59    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=89;Dels=0.0;FS=2.886;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.275;QD=14.44;ReadPosRankSum=0.907;SNPEFF_AMINO_ACID_CHANGE=V447;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11969618_11969786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    0/1:45,44:89:99:1316,0,1436
16    11970223    rs33656    A    C    311.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:345,27,0
16    11980878    rs71408212    G    GT    59.36    QDFilter2    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=32;FS=0.0;HRun=17;HaplotypeScore=274.5598;IndelType=I;MQ=53.14;MQ0=0;MQRankSum=0.382;QD=1.85;ReadPosRankSum=-0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    0/1:21,8:32:8.54:98,0,9
16    11981487    rs3752426    G    A    2753.28    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.392;DB;DP=180;Dels=0.0;FS=6.393;HRun=0;HaplotypeScore=0.8941;MQ=59.87;MQ0=0;MQRankSum=-0.644;QD=15.3;ReadPosRankSum=1.353;SNPEFF_AMINO_ACID_CHANGE=G161;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_11981427_11981607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    0/1:89,91:180:99:2783,0,2793
16    11990323    rs33636    C    G    447.35    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.027;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=17.89;ReadPosRankSum=0.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    0/1:11,14:25:99:477,0,369
16    11991944    rs33635    C    T    121.84    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=16;Dels=0.0;FS=4.26;HRun=3;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=7.61;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    0/1:10,6:16:99:152,0,348
16    12009150    rs28653099    C    A    43.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:73,0,24
16    12009279    rs424518    A    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=10.67;SNPEFF_AMINO_ACID_CHANGE=V100A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_12009226_12009825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434724    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:74,6,0
16    12009614    rs435108    G    A    385.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:419,33,0
16    12009781    rs434762    G    A    1064.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=23.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420576    GT:AD:DP:GQ:PL    1/1:0,44:44:93.19:1097,93,0
16    12021332    rs256390    G    A    2391.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=55.21;MQ0=0;QD=36.8;SNPEFF_AMINO_ACID_CHANGE=P364;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_12021230_12021736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-166B2.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399147    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2425,184,0
16    12027474    rs71139503    CAT    C    11457.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=241;DS;FS=0.0;HRun=0;HaplotypeScore=850.167;IndelType=D;MQ=49.37;MQ0=2;QD=46.96;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_12027374_12027569;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-166B2.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399147    GT:AD:DP:GQ:PL    1/1:1,243:241:99:11458,719,0
16    12031390    rs677507    C    T    2893.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.41;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-166B2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399147    GT:AD:DP:GQ:PL    1/1:0,103:103:99:2927,220,0
16    12031448    rs636664    T    C    5675.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6202;MQ=45.15;MQ0=0;QD=31.01;SNPEFF_AMINO_ACID_CHANGE=A47;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_12031397_12031525;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-166B2.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399147    GT:AD:DP:GQ:PL    1/1:0,183:183:99:5676,427,0
16    12059038    rs11570139    C    T    253.25    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.14;QD=12.66;ReadPosRankSum=0.912;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_16_12058964_12059311;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000053243    GT:AD:DP:GQ:PL    0/1:11,9:20:99:283,0,403
16    12059882    rs432140    T    C    83.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-166B2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538896    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
16    12060163    rs373496    A    G    2536.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=N78S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_12060052_12060198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435355    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2570,190,0
16    12136954    rs1703492    A    C    320.70    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.63;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.84;MQ0=0;MQRankSum=0.362;QD=17.82;ReadPosRankSum=0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268271    GT:AD:DP:GQ:PL    0/1:7,11:18:99:351,0,224
16    12140484    rs1641838    G    T    32.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=1.231;QD=6.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268271    GT:AD:DP:GQ:PL    0/1:3,2:5:62.06:62,0,110
16    12162969    rs1641843    A    G    3648.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=P48;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_12162914_12162989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3649,274,0
16    12172873    rs4352067    C    A    233.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=19.43;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:4,8:12:99:263,0,111
16    12181702    rs11648228    G    T    530.28    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=2.656;DB;DP=29;Dels=0.0;FS=4.301;HRun=1;HaplotypeScore=0.9734;MQ=59.2;MQ0=0;MQRankSum=0.197;QD=18.29;ReadPosRankSum=-0.984;SNPEFF_AMINO_ACID_CHANGE=R171S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_12180609_12182042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007601.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312019    GT:AD:DP:GQ:PL    0/1:9,20:29:99:560,0,260
16    12223637    rs62038898    A    G    68.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.77;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:3,4:7:98.41:98,0,107
16    12296803    rs1701115    G    T    3675.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.23;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3675,289,0
16    12297011    rs9933762    C    G    3270.76    HaplotypeScoreFilter13    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=4.909;DB;DP=220;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=25.6247;MQ=59.09;MQ0=0;MQRankSum=0.176;QD=14.87;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:105,111:220:99:3271,0,2920
16    12297186    rs7187644    C    T    104.36    HaplotypeScoreFilter13;QDFilter2    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=0.31;DB;DP=248;DS;Dels=0.0;FS=55.377;HRun=0;HaplotypeScore=18.123;MQ=56.11;MQ0=0;MQRankSum=-6.99;QD=0.42;ReadPosRankSum=0.874;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:214,32:248:99:134,0,6477
16    12297201    rs68145755    C    G    140.99    HaplotypeScoreFilter13;QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.605;DB;DP=239;DS;Dels=0.0;FS=27.48;HRun=1;HaplotypeScore=34.314;MQ=55.08;MQ0=0;MQRankSum=-4.797;QD=0.59;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:198,30:239:99:171,0,6272
16    12297234    rs76402650    A    G    1015.14    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=245;DS;Dels=0.0;FS=10.802;HRun=0;HaplotypeScore=8.9507;MQ=54.3;MQ0=0;MQRankSum=-2.381;QD=4.14;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:183,59:245:99:1045,0,5436
16    12297247    rs7188380    A    G    1434.28    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=2.811;DB;DP=244;DS;Dels=0.0;FS=17.404;HRun=0;HaplotypeScore=5.6131;MQ=53.79;MQ0=0;MQRankSum=-2.971;QD=5.88;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:176,68:244:99:1464,0,5136
16    12297313    rs1704128    T    A    1069.45    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=1.942;DB;DP=233;DS;Dels=0.0;FS=4.865;HRun=0;HaplotypeScore=10.7688;MQ=54.65;MQ0=0;MQRankSum=-2.886;QD=4.59;ReadPosRankSum=2.547;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:178,53:233:99:1099,0,5647
16    12297388    rs12927412    T    G    208.55    HaplotypeScoreFilter13;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=4.344;DB;DP=243;Dels=0.0;FS=56.905;HRun=1;HaplotypeScore=52.4496;MQ=54.3;MQ0=0;MQRankSum=-9.13;QD=0.86;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:200,37:243:99:239,0,6047
16    12297562    rs1701113    G    A    1168.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=35.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    1/1:0,33:33:93.29:1202,93,0
16    12371673    rs146684343    C    T    289.11    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=17;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.732;QD=17.01;ReadPosRankSum=1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:7,10:17:99:319,0,237
16    12371915    rs12448443    T    C    1098.56    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.353;DB;DP=83;Dels=0.0;FS=1.936;HRun=0;HaplotypeScore=2.6547;MQ=59.72;MQ0=0;MQRankSum=-0.118;QD=13.24;ReadPosRankSum=2.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:40,42:83:99:1129,0,1311
16    12449925    rs11075062    C    G    72.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.48;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:102,0,70
16    12450163    rs4781211    C    G    334.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.049;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=59.17;MQ0=0;MQRankSum=1.537;QD=11.94;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:16,12:28:99:364,0,417
16    12662295    rs79129526    C    G    818.23    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.643;DB;DP=86;Dels=0.0;FS=2.009;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=0.844;QD=9.51;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306030    GT:AD:DP:GQ:PL    0/1:51,35:86:99:848,0,1481
16    12758966    rs1713480    T    C    643.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_AMINO_ACID_CHANGE=K241R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_12756919_12758972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPPED1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381774    GT:AD:DP:GQ:PL    1/1:0,23:23:51.15:676,51,0
16    12759027    rs1713479    A    G    481.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPPED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261660    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:514,39,0
16    13002359    rs9938751    T    C    1181.07    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=84;Dels=0.0;FS=0.84;HRun=0;HaplotypeScore=1.1567;MQ=59.73;MQ0=0;MQRankSum=0.288;QD=14.06;ReadPosRankSum=1.597;SNPEFF_AMINO_ACID_CHANGE=M237T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_13002336_13005507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423335    GT:AD:DP:GQ:PL    0/1:40,43:84:99:1211,0,1211
16    13297096    rs4781429    A    G    254.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424107    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:287,21,0
16    13297242    rs13331224    C    T    916.52    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.202;DB;DP=71;Dels=0.0;FS=1.051;HRun=2;HaplotypeScore=0.8321;MQ=59.68;MQ0=0;MQRankSum=0.246;QD=12.91;ReadPosRankSum=-1.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424107    GT:AD:DP:GQ:PL    0/1:37,34:71:99:947,0,1161
16    13307302    rs7195991    C    A    120.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424107    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
16    13328814    rs71147791    A    ACT    336.52    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=113.341;IndelType=I;MQ=58.38;MQ0=0;MQRankSum=0.578;QD=15.3;ReadPosRankSum=1.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424107    GT:AD:DP:GQ:PL    0/1:10,9:22:99:376,0,179
16    14026007    rs254942    G    A    2647.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9832;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311895    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2680,196,0
16    14031520    rs31869    G    A    257.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439007    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
16    14530726    rs113631743    G    A    32.93    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.495;QD=4.12;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341484    GT:AD:DP:GQ:PL    0/1:6,2:8:62.92:63,0,185
16    14675943    rs72787692    C    G    876.76    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.662;DB;DP=81;Dels=0.0;FS=8.363;HRun=0;HaplotypeScore=2.8212;MQ=60.0;MQ0=0;MQRankSum=1.715;QD=10.82;ReadPosRankSum=-0.565;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341484    GT:AD:DP:GQ:PL    0/1:49,32:81:99:907,0,1705
16    14678349    rs71373034    A    AC    476.22    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=36;FS=4.058;HRun=7;HaplotypeScore=91.828;IndelType=I;MQ=60.9;MQ0=0;MQRankSum=0.0;QD=13.23;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341484    GT:AD:DP:GQ:PL    0/1:19,17:36:99:515,0,233
16    14700254    rs4782156    G    A    545.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.783;DB;DP=24;Dels=0.04;FS=0.0;HRun=11;HaplotypeScore=1.933;MQ=56.2;MQ0=0;MQRankSum=1.097;QD=21.84;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341484    GT:AD:DP:GQ:PL    1/1:2,22:24:54.13:579,54,0
16    14737968    rs2081271    T    C    128.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.24;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261658    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
16    14742400    rs11546303    T    G    2328.13    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=2.175;DB;DP=160;Dels=0.0;FS=3.047;HRun=3;HaplotypeScore=4.7133;MQ=60.0;MQ0=0;MQRankSum=1.313;QD=14.55;ReadPosRankSum=0.878;SNPEFF_AMINO_ACID_CHANGE=M140R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_14742245_14742449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFAR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261658    GT:AD:DP:GQ:PL    0/1:73,87:160:99:2358,0,2118
16    14916988    rs2606913    T    A    109    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.84;MQ0=1;MQRankSum=-1.733;QD=7.27;ReadPosRankSum=1.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432470    GT:AD:DP:GQ:PL    0/1:5,10:15:99:139,0,121
16    14932177    .    T    G    83.81    MQFilter40;QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.103;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.61;MQ0=47;MQRankSum=2.153;QD=1.33;ReadPosRankSum=1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287667    GT:AD:DP:GQ:PL    0/1:49,14:63:6.69:113,0,7
16    14957070    .    A    G    53.05    MQFilter40;QDFilter2    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.76;MQ0=57;MQRankSum=-0.348;QD=0.79;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287667    GT:AD:DP:GQ:PL    0/1:39,28:67:8.71:83,0,9
16    14969502    rs4781615    A    G    144.19    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.56;MQ0=0;MQRankSum=1.036;QD=14.42;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287667    GT:AD:DP:GQ:PL    0/1:4,6:10:99:174,0,118
16    14975292    rs4780563    A    G    444.65    MQFilter40    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.079;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6828;MQ=37.54;MQ0=0;MQRankSum=0.851;QD=11.7;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287667    GT:AD:DP:GQ:PL    0/1:17,21:38:99:475,0,479
16    14978207    rs140061889    T    C    69.34    MQFilter40;QDFilter2    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.821;DB;DP=68;Dels=0.0;FS=4.723;HRun=0;HaplotypeScore=0.0;MQ=35.7;MQ0=12;MQRankSum=-3.758;QD=1.02;ReadPosRankSum=-1.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287667    GT:AD:DP:GQ:PL    0/1:48,20:68:99:99,0,1515
16    14988868    .    A    G    1719.92    MQFilter40    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.075;DP=180;Dels=0.0;FS=3.351;HRun=1;HaplotypeScore=1.7853;MQ=31.75;MQ0=50;MQRankSum=2.134;QD=9.56;ReadPosRankSum=0.64;SNPEFF_AMINO_ACID_CHANGE=E1153G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_14988855_14988947;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287667    GT:AD:DP:GQ:PL    0/1:102,78:180:99:1750,0,1372
16    14988984    .    G    A    240.65    MQFilter40    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.476;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.64;MQ0=63;MQRankSum=1.428;QD=2.53;ReadPosRankSum=0.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287667    GT:AD:DP:GQ:PL    0/1:73,22:95:99:271,0,560
16    14989420    rs77101519    C    T    879.31    MQFilter40    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=0.799;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7864;MQ=36.5;MQ0=0;MQRankSum=0.655;QD=3.52;ReadPosRankSum=-0.323;SNPEFF_AMINO_ACID_CHANGE=A1029V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_14989371_14989498;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536948    GT:AD:DP:GQ:PL    0/1:189,60:250:99:909,0,4698
16    14989844    rs55937835    G    A    1164.68    MQFilter40    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.004;DB;DP=196;Dels=0.0;FS=53.108;HRun=1;HaplotypeScore=2.6206;MQ=34.29;MQ0=26;MQRankSum=-10.702;QD=5.94;ReadPosRankSum=0.629;SNPEFF_AMINO_ACID_CHANGE=G1060E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_14989830_14990002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536948    GT:AD:DP:GQ:PL    0/1:73,123:196:99:1195,0,2228
16    15022063    rs2665215    G    C    57.67    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.65;MQ0=1;MQRankSum=-0.72;QD=8.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432470    GT:AD:DP:GQ:PL    0/1:2,5:7:55.10:88,0,55
16    15022065    rs2665216    G    C    56.98    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.23;MQ0=1;MQRankSum=-0.198;QD=7.12;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432470    GT:AD:DP:GQ:PL    0/1:2,6:8:64.99:87,0,65
16    15045766    rs147546015    C    T    1059.36    MQFilter40    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.806;DB;DP=250;DS;Dels=0.0;FS=0.757;HRun=1;HaplotypeScore=2.6785;MQ=21.56;MQ0=56;MQRankSum=-0.767;QD=4.24;ReadPosRankSum=-1.134;SNPEFF_AMINO_ACID_CHANGE=L313F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15045472_15045913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328085    GT:AD:DP:GQ:PL    0/1:142,108:250:99:1089,0,1766
16    15082975    .    A    G    100.02    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.427;DP=42;Dels=0.0;FS=9.652;HRun=0;HaplotypeScore=0.9159;MQ=57.88;MQ0=0;MQRankSum=-0.356;QD=2.38;ReadPosRankSum=0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:35,7:42:99:130,0,1035
16    15090212    .    C    CAA    358.04    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=4.958;DP=61;FS=1.396;HRun=0;HaplotypeScore=202.938;IndelType=I;MQ=42.93;MQ0=2;MQRankSum=-1.88;QD=5.34;ReadPosRankSum=-0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:55,12:61:99:397,0,2292
16    15091589    rs71375012    C    CT    372.46    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.612;DB;DP=29;FS=0.0;HRun=11;HaplotypeScore=89.123;IndelType=I;MQ=47.52;MQ0=0;MQRankSum=-1.019;QD=12.42;ReadPosRankSum=-0.786;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:12,15:29:94.71:411,0,95
16    15092116    rs6498535    C    T    228.35    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.014;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.84;MQ0=0;MQRankSum=0.589;QD=7.87;ReadPosRankSum=0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:20,9:29:99:258,0,702
16    15100202    rs71271216    A    G    816.98    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=4.875;DB;DP=121;Dels=0.0;FS=1.779;HRun=0;HaplotypeScore=3.0304;MQ=41.4;MQ0=3;MQRankSum=-0.83;QD=6.75;ReadPosRankSum=1.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:84,37:121:99:847,0,2331
16    15110077    rs4262938    C    T    919.23    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=4.838;DB;DP=117;Dels=0.0;FS=7.736;HRun=0;HaplotypeScore=1.6988;MQ=29.93;MQ0=5;MQRankSum=0.392;QD=7.86;ReadPosRankSum=0.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:63,54:117:99:949,0,1033
16    15116400    rs4985161    T    A    145.11    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=13.19;ReadPosRankSum=1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:6,5:11:99:175,0,207
16    15116521    rs4985160    C    T    428.45    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.078;DB;DP=58;Dels=0.0;FS=3.333;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;MQRankSum=-2.189;QD=7.39;ReadPosRankSum=1.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:41,17:58:99:458,0,1332
16    15116625    rs1058637    G    T    529.39    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=68;Dels=0.0;FS=1.095;HRun=2;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.725;QD=7.79;ReadPosRankSum=-1.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:44,24:68:99:559,0,1508
16    15120411    rs62039476    T    C    221.90    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.489;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.12;MQ0=0;MQRankSum=-3.464;QD=13.05;ReadPosRankSum=-1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:7,10:17:99:252,0,241
16    15120451    .    C    T    140.98    MQFilter40    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.631;DP=46;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=36.37;MQ0=1;MQRankSum=-0.99;QD=3.06;ReadPosRankSum=-1.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    0/1:35,11:46:99:171,0,1082
16    15123680    rs140699316    G    C    166.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=1.591;QD=11.1;ReadPosRankSum=-0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455313    GT:AD:DP:GQ:PL    0/1:9,6:15:99:196,0,307
16    15127986    rs7192563    T    C    149.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=14.97;ReadPosRankSum=-0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287706    GT:AD:DP:GQ:PL    0/1:5,5:10:99:180,0,179
16    15129940    rs3198697    C    T    1915.35    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=134;Dels=0.0;FS=3.156;HRun=0;HaplotypeScore=0.8941;MQ=59.31;MQ0=0;MQRankSum=-1.371;QD=14.29;ReadPosRankSum=-0.525;SNPEFF_AMINO_ACID_CHANGE=H634;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15129873_15130251;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447912    GT:AD:DP:GQ:PL    0/1:69,65:134:99:1945,0,2036
16    15135071    rs7498279    G    A    619.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:653,48,0
16    15135269    rs9926473    T    G    240.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325823    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
16    15156971    rs2941259    A    G    489.14    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.25;MQ0=0;MQRankSum=-0.234;QD=14.82;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535621    GT:AD:DP:GQ:PL    0/1:17,16:33:99:519,0,590
16    15161909    rs56212104    C    T    39.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.69;MQ0=0;MQRankSum=0.0;QD=9.76;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535621    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:69,0,68
16    15168760    rs4985147    T    C    222.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=18.55;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535621    GT:AD:DP:GQ:PL    0/1:4,8:12:99:253,0,127
16    15170494    .    C    T    1021.81    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.914;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=59.15;MQ0=0;MQRankSum=0.094;QD=14.0;ReadPosRankSum=-0.602;SNPEFF_AMINO_ACID_CHANGE=R227Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15170415_15170507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327307    GT:AD:DP:GQ:PL    0/1:38,35:73:99:1052,0,1085
16    15178688    rs8061051    C    A    44.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.19;MQ0=0;MQRankSum=-0.727;QD=11.13;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535621    GT:AD:DP:GQ:PL    0/1:1,3:4:25.32:74,0,25
16    15179686    rs2966179    C    T    78.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=54.64;MQ0=0;MQRankSum=0.358;QD=15.73;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535621    GT:AD:DP:GQ:PL    0/1:2,3:5:55.27:109,0,55
16    15198066    .    A    G    110.80    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.89;MQ0=1;MQRankSum=0.361;QD=11.08;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358815    GT:AD:DP:GQ:PL    0/1:5,5:10:99:141,0,113
16    15198260    .    TGGGAGGTGTCTTGAGATTATCATCCGCTGAGGGTGGAGCTGAGGGTGGAAGGGGAGTGAGCAGACACACTC    T    859.85    PASS    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=6.588;DP=207;FS=2.177;HRun=0;HaplotypeScore=9574.6406;IndelType=D;MQ=57.57;MQ0=1;MQRankSum=3.935;QD=4.08;ReadPosRankSum=1.433;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_15198187_15198615;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPP1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000547107    GT:AD:DP:GQ:PL    0/1:179,32:207:99:899,0,2354
16    15198598    rs62039525    C    T    649.11    MQFilter40    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=4.258;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6905;MQ=18.35;MQ0=66;MQRankSum=4.881;QD=2.61;ReadPosRankSum=0.52;SNPEFF_AMINO_ACID_CHANGE=A220;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15198187_15198615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547107    GT:AD:DP:GQ:PL    0/1:198,50:249:99:679,0,606
16    15198604    .    C    T    611.83    MQFilter40    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=5.027;DP=250;DS;Dels=0.0;FS=1.243;HRun=0;HaplotypeScore=4.0453;MQ=18.23;MQ0=68;MQRankSum=3.3;QD=2.45;ReadPosRankSum=1.022;SNPEFF_AMINO_ACID_CHANGE=A218;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15198187_15198615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000547107    GT:AD:DP:GQ:PL    0/1:199,49:250:99:642,0,777
16    15212716    .    G    T    118.31    MQFilter40;QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.642;DP=115;Dels=0.0;FS=2.405;HRun=1;HaplotypeScore=0.0;MQ=23.04;MQ0=29;MQRankSum=-3.387;QD=1.03;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358815    GT:AD:DP:GQ:PL    0/1:88,27:115:99:148,0,1274
16    15219494    .    C    T    392.04    MQFilter40    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.035;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.71;MQ0=14;MQRankSum=0.558;QD=8.34;ReadPosRankSum=-1.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358815    GT:AD:DP:GQ:PL    0/1:26,21:47:99:422,0,388
16    15221957    rs9923527    T    C    355.38    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.327;DB;DP=60;Dels=0.0;FS=4.565;HRun=0;HaplotypeScore=1.9454;MQ=46.16;MQ0=2;MQRankSum=-5.085;QD=5.92;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=S347;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15221849_15221992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358815    GT:AD:DP:GQ:PL    0/1:31,28:60:99:385,0,980
16    15229662    rs28444099    A    G    219.38    MQFilter40    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.56;DB;DP=38;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=38.36;MQ0=2;MQRankSum=-3.755;QD=5.77;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535621    GT:AD:DP:GQ:PL    0/1:23,15:38:99:249,0,685
16    15457642    .    G    C    372.82    HaplotypeScoreFilter13;QDFilter2    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=1.959;DP=228;Dels=0.0;FS=56.468;HRun=1;HaplotypeScore=17.2591;MQ=45.01;MQ0=10;MQRankSum=-7.668;QD=1.64;ReadPosRankSum=-5.632;SNPEFF_AMINO_ACID_CHANGE=A309;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15457516_15457926;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-82O18.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360151    GT:AD:DP:GQ:PL    0/1:172,56:228:99:403,0,4261
16    15501658    rs5815832    C    CT    108.49    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=32;FS=2.56;HRun=11;HaplotypeScore=111.6986;IndelType=I;MQ=58.91;MQ0=0;MQRankSum=0.941;QD=3.39;ReadPosRankSum=1.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPV17L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287594    GT:AD:DP:GQ:PL    0/1:23,7:32:99:148,0,330
16    15609029    rs7501278    T    C    575.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300006    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:609,45,0
16    15705605    rs7185421    A    G    256.53    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=26;Dels=0.0;FS=10.139;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.826;QD=9.87;ReadPosRankSum=-1.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552535    GT:AD:DP:GQ:PL    0/1:12,14:26:99:287,0,407
16    15718591    rs2071333    G    A    1195.29    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.771;DB;DP=83;Dels=0.0;FS=4.962;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.274;QD=14.4;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321370    GT:AD:DP:GQ:PL    0/1:45,38:83:99:1225,0,1401
16    15724113    rs3752422    C    T    158.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.766;QD=10.56;ReadPosRankSum=0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548216    GT:AD:DP:GQ:PL    0/1:9,6:15:99:188,0,312
16    15727459    rs5815838    AT    A    203.41    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=3.254;DB;DP=45;FS=2.018;HRun=12;HaplotypeScore=151.7917;IndelType=D;MQ=59.11;MQ0=0;MQRankSum=0.44;QD=4.52;ReadPosRankSum=-0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549219    GT:AD:DP:GQ:PL    0/1:28,16:45:99:242,0,667
16    15730245    rs4781677    G    A    453.71    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=22.69;ReadPosRankSum=-1.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321370    GT:AD:DP:GQ:PL    0/1:6,14:20:99:484,0,195
16    15758906    rs7184854    T    C    33.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.08;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342673    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:63,0,32
16    15771601    rs6498567    T    C    64.17    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=1.05;DB;DP=19;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.85;QD=3.38;ReadPosRankSum=-1.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342673    GT:AD:DP:GQ:PL    0/1:15,4:19:94.16:94,0,518
16    15781054    rs8044738    A    G    68.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342673    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
16    15781092    rs55734390    G    T    112.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.8;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342673    GT:AD:DP:GQ:PL    0/1:2,4:6:58.08:143,0,58
16    15811023    rs1050163    C    T    1013.06    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.428;DB;DP=82;Dels=0.0;FS=9.418;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.521;QD=12.35;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=L1826;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15810997_15811205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:43,39:82:99:1043,0,1357
16    15811062    rs1050162    C    T    1022.77    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.777;DB;DP=74;Dels=0.0;FS=1.949;HRun=2;HaplotypeScore=0.7887;MQ=59.38;MQ0=0;MQRankSum=0.758;QD=13.82;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=K1813;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15810997_15811205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:40,34:74:99:1053,0,1247
16    15813211    rs11646134    G    T    196.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=21;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=9.34;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:12,9:21:99:226,0,420
16    15813633    rs17284411    G    A    607.84    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=29;Dels=0.0;FS=2.741;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.895;QD=20.96;ReadPosRankSum=-1.721;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:10,19:29:99:638,0,312
16    15813945    rs2075512    C    T    667.80    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=0.072;DB;DP=43;Dels=0.0;FS=4.251;HRun=2;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.159;QD=15.53;ReadPosRankSum=-0.621;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:16,27:43:99:698,0,453
16    15818141    rs2075511    A    C    529.50    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.557;DB;DP=50;Dels=0.0;FS=2.485;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.16;QD=10.59;ReadPosRankSum=0.995;SNPEFF_AMINO_ACID_CHANGE=A1414;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15818018_15818266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:26,24:50:99:559,0,899
16    15818310    rs11130    G    A    365.24    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.0;FS=11.634;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.277;QD=15.88;ReadPosRankSum=0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:11,12:23:99:395,0,366
16    15820863    rs16967494    C    T    1461.05    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.748;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.44;MQ0=0;MQRankSum=0.509;QD=11.88;ReadPosRankSum=-0.792;SNPEFF_AMINO_ACID_CHANGE=A1234T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15820705_15820911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:67,56:123:99:1491,0,1796
16    15831212    rs2272555    G    A    36.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=6.07;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:4,2:6:66.44:66,0,110
16    15838940    rs2384934    G    C    515.15    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.483;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.426;QD=10.96;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:26,21:47:99:545,0,772
16    15839034    rs1050113    G    A    661.64    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.09;DB;DP=57;Dels=0.0;FS=3.885;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.828;QD=11.61;ReadPosRankSum=0.287;SNPEFF_AMINO_ACID_CHANGE=A824;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15838986_15839094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:35,22:57:99:692,0,1023
16    15843899    rs6498570    G    A    648.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:682,51,0
16    15843965    rs79295535    G    A    585.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=30;Dels=0.0;FS=3.654;HRun=1;HaplotypeScore=0.5784;MQ=59.23;MQ0=0;MQRankSum=-1.391;QD=19.52;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:10,20:30:99:616,0,216
16    15850204    rs2272554    A    G    270.77    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.027;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4679;MQ=59.14;MQ0=0;MQRankSum=-1.014;QD=10.03;ReadPosRankSum=1.073;SNPEFF_AMINO_ACID_CHANGE=A581;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_15850198_15850371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:10,17:27:99:301,0,244
16    15853596    rs2280764    C    G    558.24    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.28;DB;DP=44;Dels=0.0;FS=4.549;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.181;QD=12.69;ReadPosRankSum=-0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:23,20:44:99:588,0,835
16    15869801    rs2072619    T    C    209.27    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=1.977;QD=17.44;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:5,7:12:99:239,0,150
16    15872609    rs2075514    A    G    686.74    PASS    AB=0.349;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.361;DB;DP=43;Dels=0.0;FS=1.408;HRun=0;HaplotypeScore=2.7815;MQ=60.0;MQ0=0;MQRankSum=0.654;QD=15.97;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:15,28:43:99:717,0,380
16    15872748    rs11644832    G    T    314.92    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.162;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.951;QD=15.0;ReadPosRankSum=-0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:10,11:21:99:345,0,323
16    15872807    rs11645883    G    A    333.27    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=19.6;ReadPosRankSum=0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:6,11:17:99:363,0,198
16    15876471    rs2075513    T    C    32.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.17;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:2,2:4:62.67:63,0,72
16    15892480    rs139462998    AC    A    1470.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.2;DB;DP=52;FS=0.0;HRun=1;HaplotypeScore=408.992;IndelType=D;MQ=42.5;MQ0=0;MQRankSum=-1.466;QD=28.27;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    1/1:42,10:52:99:1512,132,0
16    15892491    .    ACAG    A    141.92    PASS    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=3.64;DP=52;FS=57.928;HRun=0;HaplotypeScore=538.6485;IndelType=D;MQ=43.73;MQ0=0;MQRankSum=-1.205;QD=2.73;ReadPosRankSum=-2.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:42,6:52:99:181,0,1394
16    15917321    rs2272552    T    C    325.99    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.774;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.792;QD=16.3;ReadPosRankSum=2.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300036    GT:AD:DP:GQ:PL    0/1:7,13:20:99:356,0,196
16    15967236    rs8056910    T    C    70.15    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=6.38;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOPNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255759    GT:AD:DP:GQ:PL    0/1:7,4:11:99:100,0,247
16    15973654    rs8045082    G    T    614.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOPNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255759    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:648,48,0
16    16025750    rs12924488    T    C    1008.71    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.384;QD=12.3;ReadPosRankSum=-0.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTA-972D3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482912    GT:AD:DP:GQ:PL    0/1:42,40:82:99:1039,0,1332
16    16108282    rs4148337    T    C    177.87    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=16.17;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:5,6:11:99:208,0,163
16    16110244    rs185005    C    G    447.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.732;QD=18.63;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:10,14:24:99:477,0,339
16    16110253    rs246215    T    C    500.23    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.046;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.167;QD=16.67;ReadPosRankSum=-0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:13,17:30:99:530,0,449
16    16161976    rs35604    G    A    312.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=10.43;ReadPosRankSum=-0.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:18,12:30:99:343,0,511
16    16162019    rs35605    T    C    385.63    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.496;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9997;MQ=60.0;MQ0=0;MQRankSum=0.888;QD=8.38;ReadPosRankSum=-0.427;SNPEFF_AMINO_ACID_CHANGE=L236;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16162013_16162159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536381    GT:AD:DP:GQ:PL    0/1:30,16:46:99:416,0,1016
16    16162039    rs8187858    C    T    462.42    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=1.696;DB;DP=49;Dels=0.0;FS=1.234;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.843;QD=9.44;ReadPosRankSum=-0.208;SNPEFF_AMINO_ACID_CHANGE=Y242;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16162013_16162159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536381    GT:AD:DP:GQ:PL    0/1:30,19:49:99:492,0,989
16    16162264    rs35606    C    T    333.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.662;DB;DP=24;Dels=0.0;FS=3.203;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.385;QD=13.9;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:12,12:24:99:363,0,337
16    16184232    rs2074087    C    G    264.63    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.532;QD=24.06;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:2,9:11:55.55:295,0,56
16    16192565    rs2239995    G    A    194.68    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=24.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:2,6:8:49.75:225,0,50
16    16200756    rs11075296    C    T    193.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:227,18,0
16    16205141    rs4780592    A    G    307.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.14;MQ0=0;QD=21.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    1/1:0,14:14:33.06:341,33,0
16    16205143    rs4780593    A    G    424.04    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.14;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    1/1:0,14:14:42.10:457,42,0
16    16205161    rs4238623    G    A    552.50    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=13.9748;MQ=33.88;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:586,51,0
16    16205167    rs111263400    G    GTGGGGC    2109.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=261.7382;IndelType=I;MQ=34.78;MQ0=0;QD=81.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    1/1:11,14:26:69.23:2152,69,0
16    16205449    rs3851716    G    A    466.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:500,42,0
16    16205501    rs3887893    T    C    70.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=14.13;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:101,0,67
16    16219596    rs113369901    G    GAAAAAAAA    1543.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=7;HaplotypeScore=113.0224;IndelType=I;MQ=39.54;MQ0=0;QD=96.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    1/1:1,10:16:45.15:1585,45,0
16    16228242    rs2230671    G    A    729.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=52;Dels=0.0;FS=2.381;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.179;QD=14.03;ReadPosRankSum=-0.254;SNPEFF_AMINO_ACID_CHANGE=S1018;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16228207_16228365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536381    GT:AD:DP:GQ:PL    0/1:26,26:52:99:759,0,802
16    16230290    rs212087    G    A    176.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.763;DB;DP=18;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.234;QD=9.82;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:12,6:18:99:207,0,302
16    16232433    rs212088    G    A    134.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=12.19;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345148    GT:AD:DP:GQ:PL    0/1:6,5:11:99:164,0,144
16    16244129    rs212097    T    C    168.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.45;MQ0=0;MQRankSum=-1.093;QD=11.22;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    0/1:6,9:15:99:198,0,212
16    16251435    rs3896244    G    A    240.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:274,21,0
16    16251599    rs2238472    C    T    92.42    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=19;Dels=0.0;FS=2.251;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.57;QD=4.86;ReadPosRankSum=-1.973;SNPEFF_AMINO_ACID_CHANGE=R1268Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16251520_16251666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    0/1:13,6:19:99:122,0,409
16    16253283    rs66477669    GC    G    342.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=9;HaplotypeScore=49.764;IndelType=D;MQ=61.34;MQ0=0;QD=21.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:2,14:16:42.02:384,42,0
16    16255195    rs3851721    T    G    209.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:243,18,0
16    16256767    rs3213473    T    G    1579.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1613,135,0
16    16267079    rs11866320    A    G    200.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
16    16271357    rs111973031    T    C    2155.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=33.15;SNPEFF_AMINO_ACID_CHANGE=M848V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16271309_16271483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2188,169,0
16    16271628    rs6498616    C    T    324.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
16    16272508    rs2283508    G    A    1066.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=39.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,27:27:81.27:1100,81,0
16    16272670    rs7500834    T    C    2472.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.399;MQ=58.92;MQ0=0;QD=30.16;SNPEFF_AMINO_ACID_CHANGE=G800;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16272655_16272822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2506,187,0
16    16278695    rs2239323    A    T    246.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
16    16278863    rs8058694    G    T    864.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.01;SNPEFF_AMINO_ACID_CHANGE=H632Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16278816_16278891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:897,66,0
16    16278869    rs8058696    G    C    703.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=26.04;SNPEFF_AMINO_ACID_CHANGE=T630;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16278816_16278891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,27:27:60.15:736,60,0
16    16278975    rs66675036    GC    G    246.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=56.2755;IndelType=D;MQ=59.41;MQ0=0;QD=22.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:1,10:11:30.05:289,30,0
16    16279048    rs150467    G    C    115.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:148,12,0
16    16280889    rs7192265    C    T    154.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:188,15,0
16    16280895    rs7192961    A    G    176.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:210,18,0
16    16280921    rs8056103    T    C    360.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=57.87;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:394,30,0
16    16281007    rs12931472    A    G    817.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=V614A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16280981_16281068;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,24:25:63.20:850,63,0
16    16281154    rs4369696    C    A    84.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
16    16284272    rs7193932    C    T    755.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:788,57,0
16    16286614    rs6498618    G    C    592.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:626,48,0
16    16291627    rs12929610    G    A    313.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:347,27,0
16    16291821    .    G    T    118.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=11.87;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    0/1:4,6:10:99:149,0,105
16    16291858    rs12929920    G    C    493.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,17:17:42.10:527,42,0
16    16291871    rs9940089    G    C    533.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:567,45,0
16    16291971    rs9940825    C    T    249.31    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=13.85;ReadPosRankSum=-0.732;SNPEFF_AMINO_ACID_CHANGE=V415;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16291878_16292039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    0/1:7,11:18:99:279,0,228
16    16291983    rs9930886    A    G    129.64    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=11.79;ReadPosRankSum=1.186;SNPEFF_AMINO_ACID_CHANGE=N411;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_16291878_16292039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205557    GT:AD:DP:GQ:PL    0/1:6,5:11:99:160,0,211
16    16368159    rs113110392    A    G    41.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263012    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    16456641    .    G    A    123.64    MQFilter40    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=22.74;MQ0=2;MQRankSum=0.634;QD=5.38;ReadPosRankSum=0.803;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-958N24.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532739    GT:AD:DP:GQ:PL    0/1:15,7:23:99:154,0,142
16    16458709    .    G    A    43.54    MQFilter40;QDFilter2    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=2.188;DP=43;Dels=0.0;FS=2.645;HRun=0;HaplotypeScore=2.1877;MQ=20.49;MQ0=7;MQRankSum=-0.319;QD=1.01;ReadPosRankSum=-0.456;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-958N24.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532739    GT:AD:DP:GQ:PL    0/1:34,9:43:73.53:74,0,411
16    16463033    rs2380351    G    A    137.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.68;MQ0=0;QD=22.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-958N24.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532739    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:170,15,0
16    16465403    .    C    T    206    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.68;MQ0=8;MQRankSum=-0.957;QD=4.68;ReadPosRankSum=1.063;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-958N24.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532739    GT:AD:DP:GQ:PL    0/1:25,18:43:99:236,0,476
16    16468294    .    C    T    178.06    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.665;DP=70;Dels=0.0;FS=1.609;HRun=0;HaplotypeScore=0.734;MQ=19.99;MQ0=7;MQRankSum=-0.893;QD=2.54;ReadPosRankSum=0.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-467M13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530217    GT:AD:DP:GQ:PL    0/1:50,20:70:99:208,0,859
16    17190040    rs3889206    G    T    793.79    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=5.194;DB;DP=72;Dels=0.0;FS=3.564;HRun=1;HaplotypeScore=0.9992;MQ=55.13;MQ0=0;MQRankSum=-3.418;QD=11.02;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:43,29:72:99:824,0,1183
16    17221423    rs4782034    C    T    2416.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261381    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2450,187,0
16    17221755    rs3812961    T    G    318.47    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.139;DB;DP=33;Dels=0.0;FS=10.916;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.576;QD=9.65;ReadPosRankSum=0.814;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261381    GT:AD:DP:GQ:PL    0/1:17,16:33:99:348,0,618
16    17228368    rs12708815    G    A    393.26    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=43;Dels=0.0;FS=1.226;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=9.15;ReadPosRankSum=0.528;SNPEFF_AMINO_ACID_CHANGE=A663;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_17228330_17228592;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261381    GT:AD:DP:GQ:PL    0/1:28,15:43:99:423,0,783
16    18026440    rs1428102    G    A    133.97    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=57.6;MQ0=0;MQRankSum=0.717;QD=12.18;ReadPosRankSum=-0.466;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTA-481E9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497299    GT:AD:DP:GQ:PL    0/1:5,6:11:99:164,0,135
16    18026445    rs1428101    T    C    162.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=57.8;MQ0=0;MQRankSum=-1.191;QD=13.56;ReadPosRankSum=0.259;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTA-481E9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497299    GT:AD:DP:GQ:PL    0/1:6,6:12:99:193,0,214
16    18026490    rs1428100    C    A    1170.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTA-481E9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497299    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1203,90,0
16    18026736    rs1834943    G    A    5492.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.43;MQ0=0;QD=35.9;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTA-481E9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497299    GT:AD:DP:GQ:PL    1/1:0,153:153:99:5492,409,0
16    18470801    .    G    T    37.20    MQFilter40    AC=2;AF=1.00;AN=2;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.99;MQ0=7;QD=3.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-1212A22.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546267    GT:AD:DP:GQ:PL    1/1:6,4:10:6.01:68,6,0
16    18532017    .    T    C    64.47    MQFilter40;QDFilter2    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DP=172;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.96;MQ0=145;MQRankSum=1.244;QD=0.37;ReadPosRankSum=2.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330537    GT:AD:DP:GQ:PL    0/1:124,47:172:56.85:94,0,57
16    18597258    rs144160531    G    A    586.98    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.944;DB;DP=75;Dels=0.0;FS=20.248;HRun=0;HaplotypeScore=1.6988;MQ=45.74;MQ0=5;MQRankSum=-5.297;QD=7.72;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=G151R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_18597128_18597259;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC6P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546162    GT:AD:DP:GQ:PL    0/1:43,32:75:99:617,0,1342
16    18812675    rs75206489    G    C    37.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.6;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389467    GT:AD:DP:GQ:PL    0/1:2,3:5:54.69:68,0,55
16    18823379    rs2606556    T    C    3468.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.79;MQ0=0;QD=31.53;SNPEFF_AMINO_ACID_CHANGE=Q3564;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_18823270_18823449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446231    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3468,280,0
16    18828440    rs11332992    CG    C    96.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=11;HaplotypeScore=66.4739;IndelType=D;MQ=52.81;MQ0=0;QD=13.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389467    GT:AD:DP:GQ:PL    1/1:2,5:7:17.89:139,18,0
16    18850829    rs2257618    T    C    239.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389467    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:273,24,0
16    18878120    rs78722271    T    C    6040.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=191;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=47.69;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389467    GT:AD:DP:GQ:PL    1/1:0,191:191:99:6041,469,0
16    18883413    .    T    A    448.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.588;DP=32;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=51.37;MQ0=1;MQRankSum=-0.345;QD=14.0;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389467    GT:AD:DP:GQ:PL    0/1:12,20:32:99:478,0,393
16    19032780    rs7190066    G    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304381    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    19041491    rs4381586    T    C    1203.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304381    GT:AD:DP:GQ:PL    1/1:0,39:39:96.28:1236,96,0
16    19041595    rs28583298    G    A    643.80    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.615;DB;DP=55;Dels=0.0;FS=2.368;HRun=0;HaplotypeScore=0.9947;MQ=59.58;MQ0=0;MQRankSum=-0.355;QD=11.71;ReadPosRankSum=-0.528;SNPEFF_AMINO_ACID_CHANGE=G144E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19041546_19041691;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421369    GT:AD:DP:GQ:PL    0/1:29,26:55:99:674,0,895
16    19046960    rs12933286    T    C    687.05    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=4.637;DB;DP=41;Dels=0.0;FS=1.684;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.644;QD=16.76;ReadPosRankSum=0.512;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304381    GT:AD:DP:GQ:PL    0/1:18,23:41:99:717,0,561
16    19049378    rs8043993    A    G    689.03    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=2.155;DB;DP=67;Dels=0.0;FS=2.448;HRun=0;HaplotypeScore=1.7883;MQ=59.66;MQ0=0;MQRankSum=-0.551;QD=10.28;ReadPosRankSum=1.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304381    GT:AD:DP:GQ:PL    0/1:41,26:67:99:719,0,1261
16    19051520    rs11074355    A    G    135.07    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.424;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.88;MQ0=0;MQRankSum=0.66;QD=9.0;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304381    GT:AD:DP:GQ:PL    0/1:8,7:15:99:165,0,184
16    19056069    rs55792501    A    G    171.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=24.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304381    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:204,18,0
16    19056769    rs12051270    G    A    259.63    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.199;DB;DP=29;Dels=0.0;FS=3.948;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.041;QD=8.95;ReadPosRankSum=-0.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304381    GT:AD:DP:GQ:PL    0/1:17,12:29:99:290,0,518
16    19067933    rs17854511    G    A    565.41    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=3.638;DB;DP=51;Dels=0.0;FS=8.237;HRun=0;HaplotypeScore=0.9973;MQ=59.09;MQ0=0;MQRankSum=0.14;QD=11.09;ReadPosRankSum=0.74;SNPEFF_AMINO_ACID_CHANGE=T537;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19067864_19068019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421369    GT:AD:DP:GQ:PL    0/1:31,20:51:99:595,0,885
16    19079095    rs4531717    T    G    840.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304381    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:874,66,0
16    19083035    rs12443533    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321998    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    19083221    rs4782202    A    G    1352.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.56;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321998    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1386,111,0
16    19083549    rs9673167    C    T    70.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.07;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321998    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,108
16    19085298    rs11074359    C    T    1326.53    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.647;DB;DP=99;Dels=0.0;FS=0.765;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.224;QD=13.4;ReadPosRankSum=1.276;SNPEFF_AMINO_ACID_CHANGE=T103M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19085243_19085357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321998    GT:AD:DP:GQ:PL    0/1:50,49:99:99:1357,0,1505
16    19297219    rs179196    T    G    480.95    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.315;DB;DP=36;Dels=0.0;FS=3.079;HRun=0;HaplotypeScore=0.9665;MQ=59.48;MQ0=0;MQRankSum=1.738;QD=13.36;ReadPosRankSum=-1.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CLEC19A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465414    GT:AD:DP:GQ:PL    0/1:17,19:36:99:511,0,520
16    19310092    rs1548450    T    C    910.25    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.842;DB;DP=68;Dels=0.0;FS=3.905;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.338;QD=13.39;ReadPosRankSum=-0.576;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CLEC19A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465414    GT:AD:DP:GQ:PL    0/1:28,40:68:99:940,0,891
16    19315621    rs16971804    C    G    370.47    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.182;QD=23.15;ReadPosRankSum=-0.667;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CLEC19A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465414    GT:AD:DP:GQ:PL    0/1:4,12:16:99:400,0,121
16    19451080    rs11074394    G    T    40.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381414    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
16    19451190    rs727187    G    A    56.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.44;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381414    GT:AD:DP:GQ:PL    0/1:3,3:6:85.74:87,0,86
16    19455284    rs8052298    T    C    386.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.54;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381414    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:420,36,0
16    19455318    rs144130376    AATGGATGG    A    1533.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=235.616;IndelType=D;MQ=37.02;MQ0=0;QD=66.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381414    GT:AD:DP:GQ:PL    1/1:2,21:23:63.21:1576,63,0
16    19455615    rs4782247    G    A    525.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381414    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:558,42,0
16    19460842    rs6497373    A    G    354.53    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.815;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.08;QD=11.44;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381414    GT:AD:DP:GQ:PL    0/1:18,13:31:99:385,0,578
16    19471571    rs36019638    G    A    963.74    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=3.077;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.707;QD=16.62;ReadPosRankSum=1.602;SNPEFF_AMINO_ACID_CHANGE=A109T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19471557_19471656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:25,33:58:99:994,0,602
16    19471665    rs6497375    T    C    370.18    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.91;DB;DP=36;Dels=0.0;FS=1.982;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=10.28;ReadPosRankSum=0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:23,13:36:99:400,0,725
16    19475099    rs61737709    C    A    837.75    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.728;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.314;MQ=60.0;MQ0=0;MQRankSum=-0.383;QD=10.34;ReadPosRankSum=0.422;SNPEFF_AMINO_ACID_CHANGE=A167D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19475098_19475346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:51,30:81:99:868,0,1522
16    19475526    rs8044419    C    T    114.60    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.731;QD=19.1;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:1,5:6:24.27:145,0,24
16    19481220    rs71375642    CTT    C    113.28    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=24;FS=10.386;HRun=14;HaplotypeScore=146.4395;IndelType=D;MQ=57.52;MQ0=0;MQRankSum=2.532;QD=4.72;ReadPosRankSum=0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:16,6:24:99:152,0,300
16    19490544    rs3743958    G    A    65.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.96;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:3,3:6:95.78:96,0,105
16    19492898    rs7185836    A    C    368.10    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=2.382;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8737;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=24.54;ReadPosRankSum=0.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:3,12:15:46.11:398,0,46
16    19498565    rs34170384    A    G    729.27    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=36;Dels=0.0;FS=1.511;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.23;QD=20.26;ReadPosRankSum=0.653;SNPEFF_AMINO_ACID_CHANGE=S513;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19498515_19498648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440743    GT:AD:DP:GQ:PL    0/1:10,26:36:99:759,0,294
16    19503598    rs1475962    C    T    564.42    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=4.998;DB;DP=53;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=-0.336;QD=10.45;ReadPosRankSum=-0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:32,21:53:99:594,0,937
16    19505406    rs1475964    T    C    31.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=4.56;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:4,3:7:61.90:62,0,149
16    19505730    rs2245423    T    C    1007.74    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=0.576;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.524;QD=17.68;ReadPosRankSum=0.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:23,34:57:99:1038,0,665
16    19505751    rs2856608    G    A    867.41    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=41;Dels=0.0;FS=4.559;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=21.16;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:14,27:41:99:897,0,399
16    19505813    rs2353696    T    A    270.43    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=24.58;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    0/1:2,9:11:47.70:300,0,48
16    19505852    rs4421962    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219821    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
16    19508573    rs2187659    A    G    147.50    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.037;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=2.175;QD=6.7;ReadPosRankSum=0.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353258    GT:AD:DP:GQ:PL    0/1:16,6:22:99:177,0,589
16    19508583    rs2187660    C    G    203.07    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.828;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.336;QD=9.67;ReadPosRankSum=0.112;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353258    GT:AD:DP:GQ:PL    0/1:14,7:21:99:233,0,508
16    19509333    rs2245086    C    T    1376.53    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=5.829;DB;DP=107;Dels=0.0;FS=2.479;HRun=0;HaplotypeScore=0.9987;MQ=59.0;MQ0=0;MQRankSum=0.909;QD=12.86;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353258    GT:AD:DP:GQ:PL    0/1:58,49:107:99:1407,0,1561
16    19522394    rs12923369    A    G    166.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.66;MQ0=0;MQRankSum=-0.573;QD=16.62;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353258    GT:AD:DP:GQ:PL    0/1:4,6:10:82.61:196,0,83
16    19539467    rs12446804    A    G    181.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.67;QD=12.98;ReadPosRankSum=0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:7,7:14:99:212,0,230
16    19543981    rs12927277    G    C    181.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=15.09;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:4,8:12:99:211,0,130
16    19547747    rs226891    C    G    794.01    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.402;DB;DP=48;Dels=0.0;FS=1.133;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=-0.267;QD=16.54;ReadPosRankSum=0.631;SNPEFF_AMINO_ACID_CHANGE=I252M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19547262_19548909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:21,26:48:99:824,0,662
16    19548116    rs7190666    G    A    279.52    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.013;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.258;QD=9.32;ReadPosRankSum=-0.689;SNPEFF_AMINO_ACID_CHANGE=M375I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19547262_19548909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:19,11:30:99:310,0,658
16    19548290    rs7191012    G    A    530.12    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=3.013;DB;DP=44;Dels=0.0;FS=4.566;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.121;QD=12.05;ReadPosRankSum=1.735;SNPEFF_AMINO_ACID_CHANGE=A433;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19547262_19548909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:27,17:44:99:560,0,807
16    19548740    rs17227190    A    G    1022.66    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=71;Dels=0.0;FS=3.195;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.581;QD=14.4;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=K583;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19547262_19548909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:35,36:71:99:1053,0,1164
16    19553059    rs142289038    AGAAG    A    205.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=42.7952;IndelType=D;MQ=53.03;MQ0=0;MQRankSum=0.736;QD=29.41;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:1,6:7:58.62:245,0,59
16    19556258    rs34827175    CAT    C    937.97    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=5.109;DB;DP=41;FS=3.206;HRun=0;HaplotypeScore=133.1071;IndelType=D;MQ=59.14;MQ0=0;MQRankSum=0.044;QD=22.88;ReadPosRankSum=0.512;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:16,25:41:99:977,0,648
16    19557844    rs112602419    G    GA    81.96    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=18;FS=3.123;HRun=10;HaplotypeScore=45.8852;IndelType=I;MQ=59.64;MQ0=0;MQRankSum=-0.696;QD=4.55;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:12,6:18:99:121,0,158
16    19559049    rs12599884    G    A    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
16    19567194    rs2285662    T    A    120.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.14;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCP110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381396    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:151,0,27
16    19580699    rs121235    A    G    785.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251143    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:818,63,0
16    19584332    rs371889    A    G    484.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251143    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:517,39,0
16    19586519    rs12925996    G    A    546.76    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.315;DB;DP=38;Dels=0.0;FS=3.972;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=14.39;ReadPosRankSum=0.943;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537186    GT:AD:DP:GQ:PL    0/1:16,22:38:99:577,0,420
16    19592587    rs8060828    T    C    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.79;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544670    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,110
16    19592730    rs9935995    G    A    940.83    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.993;DB;DP=62;Dels=0.0;FS=5.178;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.106;QD=15.17;ReadPosRankSum=1.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544670    GT:AD:DP:GQ:PL    0/1:32,30:62:99:971,0,927
16    19592990    rs5816059    T    TC    979.89    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.966;DB;DP=90;FS=0.933;HRun=5;HaplotypeScore=214.185;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=0.005;QD=10.89;ReadPosRankSum=0.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544670    GT:AD:DP:GQ:PL    0/1:58,32:90:99:1019,0,1330
16    19593163    rs7184710    G    A    56.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.48;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544670    GT:AD:DP:GQ:PL    0/1:3,3:6:86.88:87,0,106
16    19619355    rs6497388    G    C    65.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.3;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251143    GT:AD:DP:GQ:PL    0/1:6,3:9:95.69:96,0,220
16    19640099    rs10549603    TTTTA    T    306.89    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=124.958;IndelType=D;MQ=61.11;MQ0=0;MQRankSum=-0.437;QD=10.58;ReadPosRankSum=0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538552    GT:AD:DP:GQ:PL    0/1:21,8:29:99:346,0,323
16    19653700    rs11643482    T    C    701.96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.561;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=13.0;ReadPosRankSum=-0.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251143    GT:AD:DP:GQ:PL    0/1:30,24:54:99:732,0,912
16    19661458    rs7192824    A    G    105.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251143    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:138,12,0
16    19663269    rs875648    T    C    809.76    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=57;Dels=0.0;FS=2.578;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=14.21;ReadPosRankSum=0.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251143    GT:AD:DP:GQ:PL    0/1:28,29:57:99:840,0,890
16    19680414    rs957675    C    T    443.43    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.257;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=14.3;ReadPosRankSum=-0.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251143    GT:AD:DP:GQ:PL    0/1:16,15:31:99:473,0,505
16    19680546    rs957676    T    C    731.09    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.197;QD=12.39;ReadPosRankSum=-1.23;SNPEFF_AMINO_ACID_CHANGE=D612;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19680482_19680621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448695    GT:AD:DP:GQ:PL    0/1:30,29:59:99:761,0,914
16    19693729    rs3815036    C    T    247.65    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.564;DB;DP=28;Dels=0.0;FS=1.974;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.753;QD=8.84;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251143    GT:AD:DP:GQ:PL    0/1:17,11:28:99:278,0,553
16    19725339    .    G    GT    536.60    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.791;DP=35;FS=0.0;HRun=1;HaplotypeScore=127.164;IndelType=I;MQ=59.47;MQ0=0;MQRankSum=0.777;QD=15.33;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219837    GT:AD:DP:GQ:PL    0/1:20,15:35:99:576,0,595
16    19725410    rs79810083    G    A    2116.64    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=6.429;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8997;MQ=59.88;MQ0=0;MQRankSum=-0.349;QD=14.21;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219837    GT:AD:DP:GQ:PL    0/1:77,72:149:99:2147,0,2011
16    19726275    rs11640454    C    T    935.30    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=84;Dels=0.0;FS=0.849;HRun=1;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=-1.423;QD=11.13;ReadPosRankSum=-0.373;SNPEFF_AMINO_ACID_CHANGE=R28Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19725440_19726359;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf88;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219837    GT:AD:DP:GQ:PL    0/1:52,32:84:99:965,0,1563
16    19799962    rs4782283    T    A    85.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308214    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:118,12,0
16    19838260    rs16969203    G    A    212.46    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.837;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.427;QD=7.87;ReadPosRankSum=0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308214    GT:AD:DP:GQ:PL    0/1:17,10:27:99:242,0,627
16    19838302    rs75971389    C    T    492.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.695;DB;DP=50;Dels=0.0;FS=1.427;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=9.85;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308214    GT:AD:DP:GQ:PL    0/1:30,20:50:99:522,0,959
16    19838319    rs79851136    G    C    870.52    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.88;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.417;QD=12.62;ReadPosRankSum=-1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308214    GT:AD:DP:GQ:PL    0/1:35,33:69:99:901,0,1145
16    19872922    rs227763    A    G    52.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=10.49;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308214    GT:AD:DP:GQ:PL    0/1:2,3:5:68.49:82,0,68
16    19873107    rs2074427    G    A    716.25    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=3.8;DB;DP=62;Dels=0.0;FS=2.583;HRun=1;HaplotypeScore=1.6439;MQ=59.33;MQ0=0;MQRankSum=-0.412;QD=11.55;ReadPosRankSum=-0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308214    GT:AD:DP:GQ:PL    0/1:37,24:62:99:746,0,934
16    19883623    rs189232467    A    C    32.03    QDFilter2    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.77;DB;DP=35;Dels=0.0;FS=21.021;HRun=2;HaplotypeScore=2.6377;MQ=57.31;MQ0=0;MQRankSum=-1.604;QD=0.92;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=V182G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_19883138_19884168;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300571    GT:AD:DP:GQ:PL    0/1:22,13:35:62.02:62,0,635
16    19884285    rs2240047    C    T    32.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=4.71;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300571    GT:AD:DP:GQ:PL    0/1:5,2:7:62.93:63,0,154
16    20084743    rs34142406    G    A    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR139;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326571    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:68,0,69
16    20322425    rs11647569    T    C    85.86    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=21.47;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302555    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:118,9,0
16    20322439    rs11642182    A    G    131.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302555    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
16    20328685    rs1129818    T    C    285.21    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=20;Dels=0.0;FS=2.282;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.26;ReadPosRankSum=-1.368;SNPEFF_AMINO_ACID_CHANGE=Q275;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20328535_20328697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341642    GT:AD:DP:GQ:PL    0/1:9,11:20:99:315,0,279
16    20331498    rs36017565    G    C    191.36    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=-2.117;QD=11.96;ReadPosRankSum=-1.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302555    GT:AD:DP:GQ:PL    0/1:9,7:16:99:221,0,297
16    20334932    rs4393582    G    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302555    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    20335325    rs12930599    G    A    685.50    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.494;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=1.368;QD=11.62;ReadPosRankSum=0.711;SNPEFF_AMINO_ACID_CHANGE=D116;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20335138_20335578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302555    GT:AD:DP:GQ:PL    0/1:32,26:59:99:715,0,903
16    20352756    rs9646256    A    G    248.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.144;QD=13.83;ReadPosRankSum=-0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302509    GT:AD:DP:GQ:PL    0/1:9,9:18:99:279,0,281
16    20357398    rs4506906    G    A    173.90    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.732;QD=10.23;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302509    GT:AD:DP:GQ:PL    0/1:10,7:17:99:204,0,287
16    20359633    rs28544423    C    T    983.56    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.237;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=10.04;ReadPosRankSum=1.475;SNPEFF_AMINO_ACID_CHANGE=G273;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20359545_20359652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMOD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429954    GT:AD:DP:GQ:PL    0/1:61,37:98:99:1014,0,1767
16    20359831    rs13335818    C    T    142.69    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=3.332;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=17.84;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=V242;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20359758_20360166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMOD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429954    GT:AD:DP:GQ:PL    0/1:3,5:8:63.71:173,0,64
16    20360993    rs71377647    G    GCCACATTC    488.75    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=45.4044;IndelType=I;MQ=44.28;MQ0=0;MQRankSum=-1.92;QD=61.09;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302509    GT:AD:DP:GQ:PL    0/1:3,4:8:99:528,0,220
16    20361087    rs111285796    T    TTCTGCCAGA    979.50    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DB;DP=16;FS=11.139;HRun=0;HaplotypeScore=101.0223;IndelType=I;MQ=48.35;MQ0=0;MQRankSum=-2.431;QD=61.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302509    GT:AD:DP:GQ:PL    0/1:10,6:16:99:1019,0,548
16    20361950    rs36060036    C    T    421.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=26;Dels=0.0;FS=10.193;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.136;QD=16.22;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMOD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302509    GT:AD:DP:GQ:PL    0/1:13,13:26:99:452,0,351
16    20370810    rs9652588    C    T    1272.70    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=90;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=1.9981;MQ=59.49;MQ0=0;MQRankSum=-0.513;QD=14.14;ReadPosRankSum=0.111;SNPEFF_AMINO_ACID_CHANGE=G529E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20370492_20370889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    0/1:46,44:90:99:1303,0,1451
16    20370816    rs9652589    C    T    1099.46    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.419;DB;DP=88;Dels=0.0;FS=3.18;HRun=1;HaplotypeScore=1.8319;MQ=59.74;MQ0=0;MQRankSum=-0.968;QD=12.49;ReadPosRankSum=-0.292;SNPEFF_AMINO_ACID_CHANGE=R527K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20370492_20370889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    0/1:45,43:88:99:1129,0,1408
16    20370981    rs9929710    A    C    75.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.02;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    0/1:2,3:5:66.19:105,0,66
16    20376588    rs8053146    G    T    115.98    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.57;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    0/1:3,4:7:97.94:146,0,98
16    20376734    rs8052918    A    G    1189.48    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=74;Dels=0.0;FS=2.298;HRun=1;HaplotypeScore=1.8154;MQ=59.38;MQ0=0;MQRankSum=0.609;QD=16.07;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    0/1:34,40:74:99:1219,0,952
16    20376755    rs8054266    T    C    1088.70    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.484;DB;DP=75;Dels=0.0;FS=4.972;HRun=0;HaplotypeScore=1.8055;MQ=59.38;MQ0=0;MQRankSum=1.275;QD=14.52;ReadPosRankSum=0.259;SNPEFF_AMINO_ACID_CHANGE=V408;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20376742_20376862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    0/1:40,35:75:99:1119,0,1037
16    20386115    rs4522429    T    C    1496.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1529,117,0
16    20410488    rs7185940    G    A    966.76    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.024;DB;DP=69;Dels=0.0;FS=8.648;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.183;QD=14.01;ReadPosRankSum=1.363;SNPEFF_AMINO_ACID_CHANGE=L45;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20410421_20410629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    0/1:36,33:69:99:997,0,1136
16    20410547    rs9926580    C    T    791.43    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.306;DB;DP=80;Dels=0.0;FS=8.011;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=9.89;ReadPosRankSum=-0.991;SNPEFF_AMINO_ACID_CHANGE=A26T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20410421_20410629;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDILT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302451    GT:AD:DP:GQ:PL    0/1:49,31:80:99:821,0,1250
16    20441053    rs8062344    C    G    605.47    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=54.07;MQ0=0;MQRankSum=-2.966;QD=11.64;ReadPosRankSum=-0.553;SNPEFF_AMINO_ACID_CHANGE=P352R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20441000_20441123;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331849    GT:AD:DP:GQ:PL    0/1:29,23:52:99:635,0,910
16    20441084    rs8063682    T    C    509.49    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.389;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7883;MQ=51.37;MQ0=0;MQRankSum=-3.122;QD=11.32;ReadPosRankSum=-1.737;SNPEFF_AMINO_ACID_CHANGE=T362;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20441000_20441123;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331849    GT:AD:DP:GQ:PL    0/1:23,22:45:99:539,0,717
16    20441215    rs8062563    A    G    158.60    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.08;MQ0=0;MQRankSum=-1.408;QD=14.42;ReadPosRankSum=2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331849    GT:AD:DP:GQ:PL    0/1:5,6:11:99:189,0,163
16    20477021    rs146045291    G    A    93.59    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.309;DB;DP=27;Dels=0.0;FS=10.055;HRun=0;HaplotypeScore=0.0;MQ=34.71;MQ0=6;MQRankSum=0.662;QD=3.47;ReadPosRankSum=2.297;SNPEFF_AMINO_ACID_CHANGE=W120*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_16_20476839_20477049;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000219054    GT:AD:DP:GQ:PL    0/1:21,6:27:99:124,0,367
16    20488803    rs1634306    T    A    1840.12    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.39;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8389;MQ=28.72;MQ0=14;MQRankSum=0.087;QD=19.58;ReadPosRankSum=-0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219054    GT:AD:DP:GQ:PL    1/1:9,85:94:99:1873,156,0
16    20492000    rs146233716    A    G    240.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.12;MQ0=48;QD=3.65;SNPEFF_AMINO_ACID_CHANGE=N235D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20491895_20492022;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536134    GT:AD:DP:GQ:PL    1/1:1,65:66:27.05:274,27,0
16    20497775    rs4783532    G    C    823.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219054    GT:AD:DP:GQ:PL    1/1:0,22:23:66.19:856,66,0
16    20498079    rs2072080    T    G    1826.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-1.027;QD=33.21;ReadPosRankSum=-1.732;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219054    GT:AD:DP:GQ:PL    1/1:1,53:55:99:1860,113,0
16    20548334    rs7404298    C    T    275.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=56.12;MQ0=0;QD=30.56;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329697    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:308,24,0
16    20551855    rs28750179    A    G    495.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.95;MQ0=0;QD=26.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329697    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:528,45,0
16    20552075    rs16970280    G    T    3026.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.193;DB;DP=91;Dels=0.0;FS=4.228;HRun=0;HaplotypeScore=0.9999;MQ=54.57;MQ0=0;MQRankSum=0.654;QD=33.26;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=I510;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20551976_20552095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329697    GT:AD:DP:GQ:PL    1/1:1,90:91:99:3060,193,0
16    20570661    rs62035059    T    C    472.29    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.07;MQ0=1;QD=27.78;SNPEFF_AMINO_ACID_CHANGE=I96V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20570559_20570769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329697    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:505,45,0
16    20647921    rs62033279    C    T    215.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219151    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
16    20682762    rs71377675    GAC    G    78.63    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=69.0792;IndelType=D;MQ=59.88;MQ0=0;MQRankSum=0.731;QD=7.15;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219151    GT:AD:DP:GQ:PL    0/1:6,5:11:21.99:118,0,22
16    20749461    rs9788809    T    C    1967.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THUMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381337    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2000,168,0
16    20750044    rs1466770    G    A    172.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THUMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381337    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
16    20750137    rs1466768    C    T    1480.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THUMPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381337    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1513,120,0
16    20792188    rs5715    T    C    2078.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4875;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289416    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2111,166,0
16    20796508    rs8058758    T    C    1124.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.056;QD=35.15;ReadPosRankSum=0.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289416    GT:AD:DP:GQ:PL    1/1:2,30:32:52.64:1158,53,0
16    20809122    rs76921366    G    T    123.63    QDFilter2    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.574;DB;DP=90;Dels=0.0;FS=52.363;HRun=3;HaplotypeScore=6.0791;MQ=53.34;MQ0=0;MQRankSum=-3.981;QD=1.37;ReadPosRankSum=1.041;SNPEFF_AMINO_ACID_CHANGE=T402K;SNPEFF_CODON_CHANGE=aCa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20808506_20810389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389345    GT:AD:DP:GQ:PL    0/1:62,28:90:99:154,0,1888
16    20810067    rs3213646    T    C    4149.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=59.63;MQ0=0;QD=36.72;SNPEFF_AMINO_ACID_CHANGE=Y352C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20807666_20810389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357967    GT:AD:DP:GQ:PL    1/1:0,113:113:99:4150,304,0
16    20810730    rs7198770    A    G    542.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.51;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9981;MQ=57.5;MQ0=0;MQRankSum=1.327;QD=31.92;ReadPosRankSum=-1.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289416    GT:AD:DP:GQ:PL    1/1:1,16:17:8.15:575,8,0
16    20811092    rs4783504    G    T    72.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289416    GT:AD:DP:GQ:PL    1/1:0,3:3:9:104,9,0
16    20811681    rs2301771    C    T    2122.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=K168;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20811624_20811724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300005    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2156,166,0
16    20826502    rs8057137    A    G    525.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004381.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261377    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:559,48,0
16    20827647    rs66706339    AT    A    122.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=36.831;IndelType=D;MQ=62.28;MQ0=0;QD=8.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004381.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261377    GT:AD:DP:GQ:PL    1/1:6,8:14:23.77:164,24,0
16    20855309    rs9929443    A    G    2768.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=E560;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20855256_20855348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004381.6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261377    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2801,205,0
16    20857260    rs2269863    C    T    306.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004381.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261377    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:340,27,0
16    20860897    rs6654    C    T    550.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004381.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261377    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:584,45,0
16    20873767    rs7187522    T    G    4397.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.81;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=R32;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20873430_20873965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCUN1D3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324344    GT:AD:DP:GQ:PL    1/1:0,143:143:99:4397,349,0
16    20974740    rs111539520    C    T    584.92    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.497;DB;DP=43;Dels=0.0;FS=1.264;HRun=0;HaplotypeScore=1.1567;MQ=59.46;MQ0=0;MQRankSum=1.242;QD=13.6;ReadPosRankSum=-1.19;SNPEFF_AMINO_ACID_CHANGE=R3489Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20974606_20976747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:23,20:43:99:615,0,620
16    20986506    rs3115438    C    T    1201.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.316;DB;DP=60;Dels=0.0;FS=8.459;HRun=0;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=1.486;QD=20.03;ReadPosRankSum=-0.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:24,36:60:99:1232,0,827
16    20998720    rs111770788    G    A    878.27    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.109;QD=14.89;ReadPosRankSum=0.374;SNPEFF_AMINO_ACID_CHANGE=F2311;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_20998627_20998770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:27,31:59:99:908,0,771
16    20999464    rs4783517    C    A    617.08    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.92;DB;DP=39;Dels=0.0;FS=7.405;HRun=1;HaplotypeScore=1.5774;MQ=58.81;MQ0=0;MQRankSum=1.784;QD=15.82;ReadPosRankSum=1.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:20,19:39:99:647,0,492
16    21008690    rs3115446    T    C    641.97    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.331;DB;DP=46;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=1.8808;MQ=59.5;MQ0=0;MQRankSum=-0.537;QD=13.96;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=K2172;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21008605_21008784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:20,26:46:99:672,0,663
16    21030897    rs3095922    T    C    1574.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1608,117,0
16    21035826    rs330135    G    C    75.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.08;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:2,3:5:59.21:105,0,59
16    21049388    rs80246148    C    T    30.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.09;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:4,2:6:60.53:61,0,131
16    21080949    .    A    C    65.93    QDFilter2    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.515;DP=38;Dels=0.0;FS=6.317;HRun=2;HaplotypeScore=2.6386;MQ=54.95;MQ0=0;MQRankSum=-1.928;QD=1.74;ReadPosRankSum=3.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:12,26:38:95.93:96,0,340
16    21116051    rs11074481    T    C    147.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=12.29;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:6,6:12:99:177,0,212
16    21117655    rs7205031    T    G    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
16    21132298    rs13330317    T    C    631.05    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.691;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=19.72;ReadPosRankSum=0.576;SNPEFF_AMINO_ACID_CHANGE=T39A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21131081_21132910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544558    GT:AD:DP:GQ:PL    0/1:13,19:32:99:661,0,401
16    21136477    rs7191215    A    G    1984.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2017,153,0
16    21145648    rs11074483    C    T    697.48    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=71;Dels=0.0;FS=3.371;HRun=2;HaplotypeScore=0.9665;MQ=59.02;MQ0=0;MQRankSum=-1.404;QD=9.82;ReadPosRankSum=-1.088;SNPEFF_AMINO_ACID_CHANGE=K309;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21145580_21145775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396036    GT:AD:DP:GQ:PL    0/1:42,29:71:99:727,0,1249
16    21147462    rs28481901    T    C    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.98;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,108
16    21147885    rs3743698    T    C    328.37    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DB;DP=25;Dels=0.0;FS=2.521;HRun=0;HaplotypeScore=1.8664;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=13.13;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:11,14:25:99:358,0,318
16    21151913    rs72780891    G    T    1172.42    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=77;Dels=0.0;FS=3.002;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.517;QD=15.23;ReadPosRankSum=1.257;SNPEFF_AMINO_ACID_CHANGE=Q185K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21151857_21152031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396036    GT:AD:DP:GQ:PL    0/1:39,38:77:99:1202,0,1291
16    21161559    rs67703371    T    TA    190.25    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=28;FS=0.0;HRun=12;HaplotypeScore=125.4528;IndelType=I;MQ=56.98;MQ0=0;MQRankSum=0.387;QD=6.79;ReadPosRankSum=-1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261383    GT:AD:DP:GQ:PL    0/1:17,11:28:99:229,0,174
16    21172263    rs72780898    G    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM159;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233047    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
16    21185384    rs1046480    G    A    1000.30    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.535;DB;DP=78;Dels=0.0;FS=8.64;HRun=0;HaplotypeScore=0.9469;MQ=59.41;MQ0=0;MQRankSum=0.092;QD=12.82;ReadPosRankSum=-0.265;SNPEFF_AMINO_ACID_CHANGE=G107S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21185331_21185469;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM159;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233047    GT:AD:DP:GQ:PL    0/1:42,36:78:99:1030,0,1244
16    21190853    rs1063087    A    C    1213.87    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.22;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.416;QD=16.86;ReadPosRankSum=0.265;SNPEFF_AMINO_ACID_CHANGE=E154D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21190796_21191937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM159;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233047    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1244,0,1045
16    21221324    rs13331814    T    G    207.64    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=15.97;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219593    GT:AD:DP:GQ:PL    0/1:6,7:13:99:238,0,210
16    21222672    rs2075520    C    A    1665.01    PASS    AB=0.599;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.014;DB;DP=142;Dels=0.0;FS=0.646;HRun=0;HaplotypeScore=1.6647;MQ=59.68;MQ0=0;MQRankSum=-1.111;QD=11.73;ReadPosRankSum=0.137;SNPEFF_AMINO_ACID_CHANGE=G36V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21222628_21222716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219593    GT:AD:DP:GQ:PL    0/1:85,57:142:99:1695,0,2716
16    21272591    rs14122    G    C    1366.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.07;MQ0=0;QD=29.7;SNPEFF_AMINO_ACID_CHANGE=T246;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21272575_21272659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415987    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1399,108,0
16    21273286    rs226048    A    G    225.48    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.469;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.202;QD=10.25;ReadPosRankSum=-0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219599    GT:AD:DP:GQ:PL    0/1:13,9:22:99:255,0,431
16    21279144    rs78459225    G    A    235.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.0;MQ0=0;MQRankSum=0.965;QD=16.83;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219599    GT:AD:DP:GQ:PL    0/1:6,8:14:99:266,0,214
16    21286699    rs2733911    C    T    77.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219599    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:107,0,29
16    21286927    rs226045    A    G    362.16    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.712;DB;DP=46;Dels=0.0;FS=1.184;HRun=1;HaplotypeScore=0.9997;MQ=59.19;MQ0=0;MQRankSum=0.394;QD=7.87;ReadPosRankSum=1.542;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219599    GT:AD:DP:GQ:PL    0/1:28,18:46:99:392,0,950
16    21289626    rs3848259    C    G    42.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.55;ReadPosRankSum=0.736;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_21289403_21289657;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219599    GT:AD:DP:GQ:PL    0/1:2,2:4:33.20:72,0,33
16    21358552    .    G    A    267.38    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DP=33;Dels=0.0;FS=5.722;HRun=0;HaplotypeScore=0.0;MQ=50.6;MQ0=1;MQRankSum=-0.409;QD=8.1;ReadPosRankSum=-0.097;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTD-2547E10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549658    GT:AD:DP:GQ:PL    0/1:21,12:33:99:297,0,602
16    21388110    rs2686119    T    C    112.29    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=41.66;MQ0=1;MQRankSum=-1.63;QD=5.91;ReadPosRankSum=1.449;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RUNDC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324089    GT:AD:DP:GQ:PL    0/1:11,8:19:99:142,0,306
16    21397273    .    C    CTG    338.12    PASS    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.442;DP=30;FS=0.0;HRun=0;HaplotypeScore=96.9706;IndelType=I;MQ=27.42;MQ0=24;MQRankSum=0.651;QD=6.26;ReadPosRankSum=0.341;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RUNDC2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324089    GT:AD:DP:GQ:PL    0/1:43,9:30:99:377,0,330
16    21416094    rs144101135    G    A    74.12    MQFilter40;QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=0.314;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9454;MQ=8.57;MQ0=160;MQRankSum=-0.045;QD=0.3;ReadPosRankSum=-0.015;SNPEFF_AMINO_ACID_CHANGE=P172L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21416044_21416640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542817    GT:AD:DP:GQ:PL    0/1:218,32:250:99:104,0,183
16    21416114    .    C    T    88.82    MQFilter40;QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.041;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8938;MQ=8.71;MQ0=164;MQRankSum=-0.088;QD=0.36;ReadPosRankSum=-1.393;SNPEFF_AMINO_ACID_CHANGE=A165;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21416044_21416640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542817    GT:AD:DP:GQ:PL    0/1:216,34:250:99:119,0,205
16    21416278    .    G    C    52.72    MQFilter40;QDFilter2    AB=0.94;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.887;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4151;MQ=15.81;MQ0=126;MQRankSum=3.043;QD=0.21;ReadPosRankSum=-4.691;SNPEFF_AMINO_ACID_CHANGE=L111V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_21416044_21416640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542817    GT:AD:DP:GQ:PL    0/1:235,15:250:82.72:83,0,1429
16    21458337    .    T    A    57.75    MQFilter40    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=12;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=19.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543368    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:90,9,0
16    21531494    rs42138    T    C    923.89    PASS    AB=0.256;AC=1;AF=0.50;AN=2;BaseQRankSum=1.305;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5807;MQ=51.74;MQ0=0;MQRankSum=-1.614;QD=23.69;ReadPosRankSum=0.755;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2547E10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437413    GT:AD:DP:GQ:PL    0/1:10,29:39:99:954,0,119
16    21531609    rs42139    C    T    162.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=57.07;MQ0=0;MQRankSum=-0.377;QD=12.46;ReadPosRankSum=-0.811;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2547E10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522841    GT:AD:DP:GQ:PL    0/1:6,7:13:99:192,0,182
16    21531681    rs42140    C    G    35.77    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=7;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=55.84;MQ0=0;MQRankSum=0.358;QD=5.11;ReadPosRankSum=0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2547E10.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522841    GT:AD:DP:GQ:PL    0/1:2,5:7:65.76:66,0,66
16    21558789    .    G    A    1324.27    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DP=184;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=57.82;MQ0=0;MQRankSum=1.769;QD=7.2;ReadPosRankSum=0.424;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTB-31N19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550637    GT:AD:DP:GQ:PL    0/1:129,55:184:99:1354,0,3995
16    21561333    rs71231440    G    A    89.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.33;MQ0=0;MQRankSum=0.72;QD=14.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTB-31N19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550637    GT:AD:DP:GQ:PL    0/1:2,4:6:18.41:119,0,18
16    21561541    .    G    A    755.67    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=2.561;DP=209;Dels=0.0;FS=2.675;HRun=0;HaplotypeScore=4.9921;MQ=48.04;MQ0=0;MQRankSum=-0.257;QD=3.62;ReadPosRankSum=-2.161;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CTB-31N19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550637    GT:AD:DP:GQ:PL    0/1:162,47:209:99:786,0,3637
16    21652720    rs1055740    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358154    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
16    21654369    rs1454372    A    T    875.35    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.724;DB;DP=56;Dels=0.0;FS=1.469;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.475;QD=15.63;ReadPosRankSum=-1.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268389    GT:AD:DP:GQ:PL    0/1:24,32:56:99:905,0,726
16    21658389    rs1454373    G    A    515.20    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=3.217;DB;DP=39;Dels=0.0;FS=3.005;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=13.21;ReadPosRankSum=-1.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268389    GT:AD:DP:GQ:PL    0/1:19,20:39:99:545,0,590
16    21663795    rs3091402    G    A    486.60    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.048;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.996;QD=15.7;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268389    GT:AD:DP:GQ:PL    0/1:15,16:31:99:517,0,506
16    21690559    rs12445216    G    A    534.20    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-1.096;QD=11.13;ReadPosRankSum=-0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:25,23:48:99:564,0,856
16    21696458    .    A    AT    559.97    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.633;DP=25;FS=0.0;HRun=1;HaplotypeScore=65.9922;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-2.136;QD=22.4;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:10,15:25:99:599,0,309
16    21716134    .    CGGA    C    353.33    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DP=13;FS=0.0;HRun=0;HaplotypeScore=89.8911;IndelType=D;MQ=49.67;MQ0=0;MQRankSum=-0.888;QD=27.18;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:4,9:13:99:392,0,99
16    21730449    rs215901    C    T    470.04    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=35;Dels=0.0;FS=1.348;HRun=1;HaplotypeScore=1.9265;MQ=60.0;MQ0=0;MQRankSum=-0.644;QD=13.43;ReadPosRankSum=0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:18,17:35:99:500,0,526
16    21734417    rs12598177    A    G    132.79    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=10.21;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:8,5:13:99:163,0,268
16    21737626    rs8054407    G    A    37.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=5.42;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:4,3:7:67.94:68,0,145
16    21739373    rs12597963    A    G    89.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
16    21739430    rs4408531    T    C    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
16    21747556    rs56065183    C    T    600.10    MQFilter40    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.786;DB;DP=57;Dels=0.0;FS=7.582;HRun=1;HaplotypeScore=1.6828;MQ=33.46;MQ0=14;MQRankSum=-0.717;QD=10.53;ReadPosRankSum=0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:34,23:57:99:630,0,579
16    21764325    .    C    T    303.45    MQFilter40;QDFilter2    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.137;DP=193;Dels=0.0;FS=7.762;HRun=0;HaplotypeScore=0.0;MQ=14.32;MQ0=116;MQRankSum=0.488;QD=1.57;ReadPosRankSum=-2.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:150,43:193:99:333,0,959
16    21771908    rs74415880    A    G    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.73;MQ0=1;MQRankSum=-1.754;QD=4.81;ReadPosRankSum=0.937;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286149    GT:AD:DP:GQ:PL    0/1:4,4:8:68.50:69,0,147
16    21811211    .    C    T    59.21    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.0;MQ0=51;MQRankSum=1.214;QD=0.97;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-645C24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514813    GT:AD:DP:GQ:PL    1/1:31,30:61:11.95:92,12,0
16    21817398    rs149686515    T    TA    128.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;FS=0.0;HRun=7;HaplotypeScore=40.6389;IndelType=I;MQ=46.58;MQ0=0;MQRankSum=-0.825;QD=10.7;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-645C24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551681    GT:AD:DP:GQ:PL    0/1:6,6:12:99:167,0,112
16    21817457    .    G    A    283.35    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.617;DP=36;Dels=0.0;FS=8.415;HRun=1;HaplotypeScore=0.0;MQ=45.2;MQ0=1;MQRankSum=-3.317;QD=7.87;ReadPosRankSum=1.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-645C24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551681    GT:AD:DP:GQ:PL    0/1:20,16:36:99:313,0,606
16    21823156    rs493020    A    G    167.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=25.11;MQ0=2;QD=20.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-645C24.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514813    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:201,18,0
16    21983136    rs2967156    T    C    402.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UQCRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268379    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:436,33,0
16    21983194    rs10521119    A    G    518.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.149;DB;DP=36;Dels=0.0;FS=1.817;HRun=0;HaplotypeScore=0.9469;MQ=59.36;MQ0=0;MQRankSum=-0.347;QD=14.41;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UQCRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268379    GT:AD:DP:GQ:PL    0/1:18,18:36:99:549,0,595
16    21992122    rs2965803    T    C    611.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;QD=32.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286143    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:645,51,0
16    22128052    rs11649656    T    G    1558.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.38;MQ0=0;QD=23.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299840    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1591,159,0
16    22128053    rs11649657    T    C    1504.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.38;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299840    GT:AD:DP:GQ:PL    1/1:0,67:67:99:1538,156,0
16    22132090    rs72768903    C    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.12;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299840    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,104
16    22137603    rs55732851    G    A    1861.45    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=143;Dels=0.0;FS=3.3;HRun=0;HaplotypeScore=0.9999;MQ=59.84;MQ0=0;MQRankSum=-0.319;QD=13.02;ReadPosRankSum=2.404;SNPEFF_AMINO_ACID_CHANGE=C169Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_22137499_22137618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299840    GT:AD:DP:GQ:PL    0/1:81,62:143:99:1891,0,2572
16    22161136    rs1991020    T    C    1816.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.6;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=F1005L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_22161108_22161252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VWA3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389398    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1849,156,0
16    22177490    rs79651149    A    T    70.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=10.12;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDR42E2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330898    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,138
16    22260058    rs79637818    G    A    298.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.725;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.739;QD=13.56;ReadPosRankSum=-2.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263026    GT:AD:DP:GQ:PL    0/1:11,11:22:99:328,0,345
16    22269867    rs4783453    A    G    2081.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_AMINO_ACID_CHANGE=Q361R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_22269815_22270016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2K;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263026    GT:AD:DP:GQ:PL    1/1:0,63:64:99:2115,172,0
16    22276105    rs72768938    G    A    374.65    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.921;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.745;QD=19.72;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263026    GT:AD:DP:GQ:PL    0/1:6,13:19:99:405,0,135
16    22314354    .    C    T    1413.58    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=5.167;DP=74;Dels=0.0;FS=1.369;HRun=0;HaplotypeScore=2.6511;MQ=59.31;MQ0=0;MQRankSum=0.333;QD=19.1;ReadPosRankSum=0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299853    GT:AD:DP:GQ:PL    0/1:31,43:74:99:1444,0,766
16    22328094    rs2290830    G    T    165.57    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.33;MQ0=0;MQRankSum=0.811;QD=11.83;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299853    GT:AD:DP:GQ:PL    0/1:7,6:14:99:196,0,244
16    22330038    rs2926362    T    C    109.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=10.93;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299853    GT:AD:DP:GQ:PL    0/1:5,5:10:99:139,0,174
16    22360385    rs4238735    A    G    304.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268383    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:337,27,0
16    22441095    .    A    G    770.36    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.531;DP=78;Dels=0.0;FS=5.211;HRun=0;HaplotypeScore=0.0;MQ=51.86;MQ0=0;MQRankSum=-6.075;QD=9.88;ReadPosRankSum=4.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-21M24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549207    GT:AD:DP:GQ:PL    0/1:48,30:78:99:800,0,1591
16    22441145    .    C    A    502.83    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=4.229;DP=118;Dels=0.0;FS=5.993;HRun=1;HaplotypeScore=2.3893;MQ=50.58;MQ0=0;MQRankSum=-6.886;QD=4.26;ReadPosRankSum=-4.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-21M24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549207    GT:AD:DP:GQ:PL    0/1:90,28:118:99:533,0,2815
16    22441236    .    G    A    46.86    QDFilter2    AB=0.899;AC=1;AF=0.50;AN=2;BaseQRankSum=1.661;DP=119;Dels=0.0;FS=29.777;HRun=1;HaplotypeScore=3.2176;MQ=47.05;MQ0=0;MQRankSum=-4.474;QD=0.39;ReadPosRankSum=-1.198;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-21M24.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549207    GT:AD:DP:GQ:PL    0/1:107,12:119:76.85:77,0,3183
16    22492615    .    A    T    74.39    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.595;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.57;MQ0=10;MQRankSum=0.311;QD=2.07;ReadPosRankSum=-1.661;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-368J21.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415654    GT:AD:DP:GQ:PL    0/1:20,16:36:79.70:104,0,80
16    22545865    .    G    C    489.99    QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=1.512;DP=250;DS;Dels=0.0;FS=19.389;HRun=3;HaplotypeScore=10.3851;MQ=41.55;MQ0=4;MQRankSum=1.38;QD=1.96;ReadPosRankSum=1.558;SNPEFF_AMINO_ACID_CHANGE=A399P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_22544947_22546779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-368J21.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000503072    GT:AD:DP:GQ:PL    0/1:209,39:250:99:520,0,5870
16    22545897    rs143579045    G    T    887.28    MQFilter40    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.7666;MQ=25.45;MQ0=134;MQRankSum=-1.011;QD=3.55;ReadPosRankSum=-0.173;SNPEFF_AMINO_ACID_CHANGE=K409N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_22544947_22546779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-368J21.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000503072    GT:AD:DP:GQ:PL    0/1:201,48:250:99:917,0,1781
16    22579730    rs429457    ATG    A    184.79    PASS    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.529;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=252.6695;IndelType=D;MQ=33.64;MQ0=5;MQRankSum=-1.754;QD=4.2;ReadPosRankSum=0.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-368J21.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548889    GT:AD:DP:GQ:PL    0/1:31,6:38:99:224,0,490
16    22587868    rs4783422    G    C    72.94    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.9;MQ0=1;MQRankSum=-0.421;QD=7.29;ReadPosRankSum=-0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-368J21.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548889    GT:AD:DP:GQ:PL    0/1:4,5:10:99:103,0,103
16    22588087    .    G    C    96.76    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=38.78;MQ0=2;MQRankSum=-0.796;QD=5.69;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-368J21.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548889    GT:AD:DP:GQ:PL    0/1:10,7:17:99:127,0,351
16    22588118    rs56041217    G    A    131.98    MQFilter40    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=33.73;MQ0=2;MQRankSum=0.198;QD=14.66;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-368J21.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548889    GT:AD:DP:GQ:PL    0/1:2,7:9:24.59:162,0,25
16    23079353    rs8047644    T    C    1345.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.44;MQ0=0;QD=31.3;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219689    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1379,105,0
16    23080634    rs10083789    C    A    411.31    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.162;DB;DP=35;Dels=0.0;FS=3.261;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.337;QD=11.75;ReadPosRankSum=0.677;SNPEFF_AMINO_ACID_CHANGE=R234L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23080144_23080937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381162    GT:AD:DP:GQ:PL    0/1:18,17:35:99:441,0,462
16    23117305    rs146579518    G    A    33.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.41;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219689    GT:AD:DP:GQ:PL    0/1:2,2:4:63.63:64,0,66
16    23205657    rs4247210    G    C    496.81    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.38;QD=15.53;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:14,18:32:99:527,0,438
16    23221183    rs5740    A    G    725.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:758,60,0
16    23221238    rs4281710    A    G    244.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
16    23223233    rs9941210    G    T    236.71    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.667;QD=16.91;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:5,9:14:99:267,0,164
16    23223262    rs9941215    G    A    276.91    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.342;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.244;QD=16.29;ReadPosRankSum=0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:7,10:17:99:307,0,229
16    23223300    rs9931527    T    C    333.07    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=20;Dels=0.0;FS=1.922;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.456;QD=16.65;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:9,11:20:99:363,0,283
16    23224106    rs12708649    T    C    588.86    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=58;Dels=0.0;FS=7.679;HRun=0;HaplotypeScore=0.9332;MQ=59.28;MQ0=0;MQRankSum=-0.137;QD=10.15;ReadPosRankSum=-1.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:32,26:58:99:619,0,885
16    23224416    rs13306653    G    A    500.15    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.563;DB;DP=44;Dels=0.0;FS=7.815;HRun=0;HaplotypeScore=0.734;MQ=56.78;MQ0=0;MQRankSum=-0.16;QD=11.37;ReadPosRankSum=-0.874;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:25,19:44:99:530,0,666
16    23224517    rs13306654    T    G    661.61    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.002;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6219;MQ=53.81;MQ0=0;MQRankSum=0.867;QD=14.08;ReadPosRankSum=0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:23,22:47:99:692,0,544
16    23224698    rs4402571    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    23225984    rs11643517    A    G    352.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=18;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=19.61;ReadPosRankSum=1.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:6,12:18:99:383,0,166
16    23226787    rs5723    C    G    640.39    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.481;DB;DP=61;Dels=0.0;FS=7.845;HRun=0;HaplotypeScore=3.7978;MQ=59.69;MQ0=0;MQRankSum=1.927;QD=10.5;ReadPosRankSum=-0.588;SNPEFF_AMINO_ACID_CHANGE=L649;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23226410_23228204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300061    GT:AD:DP:GQ:PL    0/1:38,23:61:99:670,0,1143
16    23315577    rs60997643    C    CACACACACAT    317.07    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=77.7432;IndelType=I;MQ=58.87;MQ0=0;MQRankSum=0.0;QD=26.42;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307331    GT:AD:DP:GQ:PL    0/1:7,5:12:99:356,0,183
16    23360199    rs238547    T    C    584.03    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.033;QD=13.27;ReadPosRankSum=-0.51;SNPEFF_AMINO_ACID_CHANGE=P138;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23359913_23360231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307331    GT:AD:DP:GQ:PL    0/1:20,24:44:99:614,0,620
16    23364081    rs63982    A    C    692.40    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.361;DB;DP=53;Dels=0.0;FS=2.794;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.62;QD=13.06;ReadPosRankSum=-0.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307331    GT:AD:DP:GQ:PL    0/1:30,23:53:99:722,0,1006
16    23390201    rs2303153    G    C    141.51    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=58.11;MQ0=0;MQRankSum=0.296;QD=14.15;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307331    GT:AD:DP:GQ:PL    0/1:3,7:10:99:172,0,100
16    23391630    rs3743966    A    T    302.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=25.22;ReadPosRankSum=-0.925;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCNN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307331    GT:AD:DP:GQ:PL    0/1:3,9:12:78.43:333,0,78
16    23400194    rs250587    G    A    233.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.618;QD=12.97;ReadPosRankSum=0.265;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307149    GT:AD:DP:GQ:PL    0/1:9,9:18:99:263,0,285
16    23400494    rs250586    C    A    189.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307149    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:223,18,0
16    23404355    rs30020    G    A    83.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307149    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
16    23454121    rs391662    T    C    73.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.35;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307149    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:103,0,30
16    23456578    rs540719    T    C    277.16    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=16;Dels=0.0;FS=9.031;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=17.32;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307149    GT:AD:DP:GQ:PL    0/1:6,10:16:99:307,0,200
16    23486197    rs11074559    A    G    1488.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.772;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498959    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1521,126,0
16    23489529    rs4968007    A    G    977.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=55.48;MQ0=0;QD=26.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309859    GT:AD:DP:GQ:PL    1/1:0,37:37:87.25:1011,87,0
16    23489711    rs1135045    C    G    3057.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=58.14;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=A424P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23489689_23489822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309859    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3091,232,0
16    23490353    rs4968008    T    G    501.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.61;SNPEFF_AMINO_ACID_CHANGE=S4R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23489583_23490537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000498959    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:535,39,0
16    23506940    rs722069    G    A    303.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309859    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:337,24,0
16    23535680    rs1468138    A    C    3160.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.53;MQ0=0;QD=31.93;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341597    GT:AD:DP:GQ:PL    1/1:0,97:99:99:3194,241,0
16    23536366    rs6497670    T    C    41.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341597    GT:AD:DP:GQ:PL    1/1:0,3:3:8.98:73,9,0
16    23536684    rs6497671    T    C    1732.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=S457G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23536565_23536700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EARS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341597    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1766,129,0
16    23540798    rs2072062    C    T    493.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341597    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:527,42,0
16    23541223    rs2072061    G    A    2035.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341597    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2068,153,0
16    23546561    rs2073951    G    C    908.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=V202;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23546209_23546681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341597    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:941,69,0
16    23555726    rs2369009    C    T    129.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EARS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341597    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
16    23563501    rs7187920    C    T    2012.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.61;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=A88;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23563470_23563625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EARS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341597    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2045,153,0
16    23615042    rs35294437    T    TA    53.22    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=114.1991;IndelType=I;MQ=51.0;MQ0=0;MQRankSum=-1.186;QD=3.8;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261584    GT:AD:DP:GQ:PL    0/1:8,5:14:70.21:92,0,70
16    23625463    rs249936    A    T    280.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261584    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:313,24,0
16    23640467    rs249954    G    A    710.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261584    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:744,54,0
16    23654509    rs703769    T    G    112.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=16.06;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300087    GT:AD:DP:GQ:PL    1/1:1,6:7:12.04:145,12,0
16    23677006    rs35586    A    G    1436.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=33.42;SNPEFF_AMINO_ACID_CHANGE=P136;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23676947_23677049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300087    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1470,111,0
16    23677111    rs35585    G    A    672.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300087    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:705,54,0
16    23692405    rs40076    A    G    2033.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300093    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2067,153,0
16    23698547    rs8043623    G    T    123.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
16    23700231    rs112964547    C    CTT    189.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=11;HaplotypeScore=40.1895;IndelType=I;MQ=61.53;MQ0=0;QD=27.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    1/1:1,6:7:18.05:232,18,0
16    23700266    rs26765    A    C    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
16    23700676    rs45569335    T    A    459.76    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.347;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6863;MQ=59.41;MQ0=0;MQRankSum=0.95;QD=11.79;ReadPosRankSum=0.219;SNPEFF_AMINO_ACID_CHANGE=L366H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23700559_23700713;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425844    GT:AD:DP:GQ:PL    0/1:21,18:39:99:490,0,669
16    23701538    rs27770    A    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.16;SNPEFF_AMINO_ACID_CHANGE=V247;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23701459_23701688;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330792    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:84,6,0
16    23702074    .    C    CCTGGCGGTCTTTT    1162.78    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=59.1331;IndelType=I;MQ=30.43;MQ0=0;QD=145.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300093    GT:AD:DP:GQ:PL    1/1:3,4:8:24.08:1205,24,0
16    23711925    rs26764    C    G    2606    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=S435T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_23711860_23712025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457008    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2639,202,0
16    23712183    rs26763    A    G    643.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:677,54,0
16    23712448    rs26762    G    T    1826.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1859,138,0
16    23713313    rs113691777    C    CAAA    278.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=17.398;IndelType=I;MQ=64.19;MQ0=0;QD=55.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:320,15,0
16    23713395    rs8058610    C    T    1015.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.82;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1049,78,0
16    23721395    rs34876439    A    G    126.43    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=11.49;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    0/1:6,5:11:99:156,0,210
16    23721601    rs4967959    T    G    494.77    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.465;DB;DP=30;Dels=0.0;FS=3.155;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.046;QD=16.49;ReadPosRankSum=0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    0/1:13,17:30:99:525,0,373
16    23722042    rs3899652    T    C    324.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=21.65;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256797    GT:AD:DP:GQ:PL    0/1:5,10:15:99:355,0,152
16    23724753    rs3809682    G    A    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.51;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457008    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
16    23768380    rs5816221    T    TG    228.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=5;HaplotypeScore=12.7827;IndelType=I;MQ=61.53;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130454.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300113    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
16    23768710    rs109592    C    T    679.79    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.316;DB;DP=44;Dels=0.0;FS=9.013;HRun=0;HaplotypeScore=0.0;MQ=60.25;MQ0=0;MQRankSum=-0.47;QD=15.45;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130454.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300113    GT:AD:DP:GQ:PL    0/1:23,21:44:99:710,0,756
16    23768727    rs194821    C    T    515.27    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.71;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.21;MQ0=0;MQRankSum=-3.57;QD=10.1;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130454.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300113    GT:AD:DP:GQ:PL    0/1:25,26:51:99:545,0,799
16    23768802    rs80950    T    G    4391.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.0224;MQ=59.66;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC130454.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300113    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4392,334,0
16    23847747    rs150723603    TGCGCCCTCC    T    1124.32    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=4.925;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=397.6977;IndelType=D;MQ=51.03;MQ0=0;MQRankSum=-3.399;QD=30.39;ReadPosRankSum=1.075;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303531    GT:AD:DP:GQ:PL    0/1:19,18:37:99:1163,0,1675
16    23847786    rs7185969    T    C    283.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.57;DB;DP=24;Dels=0.0;FS=2.793;HRun=2;HaplotypeScore=0.0;MQ=48.84;MQ0=0;MQRankSum=-2.506;QD=11.8;ReadPosRankSum=-1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303531    GT:AD:DP:GQ:PL    0/1:8,16:24:99:313,0,173
16    23847797    rs7184949    G    C    224.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.24;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.22;MQ0=0;MQRankSum=-1.479;QD=11.24;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303531    GT:AD:DP:GQ:PL    0/1:8,12:20:99:255,0,194
16    23848762    rs3729883    G    A    869.96    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.592;QD=18.91;ReadPosRankSum=1.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303531    GT:AD:DP:GQ:PL    0/1:17,29:46:99:900,0,564
16    24104328    rs880824    A    G    424.20    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.671;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.603;QD=19.28;ReadPosRankSum=1.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486868    GT:AD:DP:GQ:PL    0/1:9,13:22:99:454,0,300
16    24105669    rs7196765    G    A    840.62    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.884;DB;DP=51;Dels=0.0;FS=1.641;HRun=0;HaplotypeScore=1.9978;MQ=60.0;MQ0=0;MQRankSum=-0.199;QD=16.48;ReadPosRankSum=0.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486868    GT:AD:DP:GQ:PL    0/1:23,28:51:99:871,0,733
16    24124149    rs68132728    AAAAACAAACC    A    1234.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=166.6067;IndelType=D;MQ=39.0;MQ0=0;QD=77.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482000    GT:AD:DP:GQ:PL    1/1:1,15:16:45.15:1277,45,0
16    24135112    rs1013316    T    C    290.33    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.44;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=17.08;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303531    GT:AD:DP:GQ:PL    0/1:7,10:17:99:320,0,190
16    24166130    rs432998    T    C    407.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.95;SNPEFF_AMINO_ACID_CHANGE=P397;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_24166005_24166178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303531    GT:AD:DP:GQ:PL    1/1:0,17:17:33.10:440,33,0
16    24202458    rs3729904    C    T    2645.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_AMINO_ACID_CHANGE=G590;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_24202411_24202551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303531    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2678,208,0
16    24202615    rs198145    A    G    1921.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303531    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1955,144,0
16    24231252    rs41278144    G    A    158.61    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.858;DB;DP=27;Dels=0.0;FS=3.385;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=5.87;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321728    GT:AD:DP:GQ:PL    0/1:20,7:27:99:189,0,703
16    24357998    rs5816249    T    TG    1167.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=2;HaplotypeScore=65.2022;IndelType=I;MQ=59.95;MQ0=0;QD=41.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005284    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1210,84,0
16    24557619    rs3214553    C    CT    214.90    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=25.0855;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=16.53;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319715    GT:AD:DP:GQ:PL    0/1:5,8:13:79.83:254,0,80
16    24564879    rs72196182    GTA    G    745.84    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=3.453;DB;DP=61;FS=1.482;HRun=0;HaplotypeScore=221.6394;IndelType=D;MQ=59.68;MQ0=0;MQRankSum=1.487;QD=12.03;ReadPosRankSum=0.339;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319715    GT:AD:DP:GQ:PL    0/1:33,24:61:99:785,0,698
16    24567320    rs7202501    A    G    172.15    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=15.65;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319715    GT:AD:DP:GQ:PL    0/1:5,6:11:99:202,0,172
16    24570757    rs3815906    T    C    144.48    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=13.13;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319715    GT:AD:DP:GQ:PL    0/1:6,5:11:99:174,0,192
16    24572884    rs138253390    CTT    C    556.95    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=4.131;DB;DP=31;FS=0.0;HRun=3;HaplotypeScore=95.8707;IndelType=D;MQ=60.69;MQ0=0;MQRankSum=0.613;QD=17.97;ReadPosRankSum=-0.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319715    GT:AD:DP:GQ:PL    0/1:16,15:31:99:596,0,830
16    24574645    rs139004713    AT    A    516.02    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=3.245;DB;DP=78;FS=1.361;HRun=8;HaplotypeScore=439.1394;IndelType=D;MQ=53.45;MQ0=0;MQRankSum=1.466;QD=6.62;ReadPosRankSum=0.547;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319715    GT:AD:DP:GQ:PL    0/1:53,25:78:99:555,0,1085
16    24578458    rs7195386    T    C    497.17    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.012;DB;DP=43;Dels=0.0;FS=6.673;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;MQRankSum=-0.644;QD=11.56;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319715    GT:AD:DP:GQ:PL    0/1:22,21:43:99:527,0,589
16    24583406    rs7593    A    G    968.39    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.101;DB;DP=90;Dels=0.0;FS=2.849;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=10.76;ReadPosRankSum=1.694;SNPEFF_AMINO_ACID_CHANGE=A1639;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_24582197_24584184;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348022    GT:AD:DP:GQ:PL    0/1:51,39:90:99:998,0,1642
16    24741686    rs7202252    T    C    1465.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315183    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1499,126,0
16    24807165    rs1030211    G    A    1809.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.54;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315183    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1842,135,0
16    24826541    .    A    C    38.18    QDFilter2    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.725;DP=58;Dels=0.0;FS=16.435;HRun=2;HaplotypeScore=4.6435;MQ=58.8;MQ0=0;MQRankSum=1.474;QD=0.66;ReadPosRankSum=1.827;SNPEFF_AMINO_ACID_CHANGE=S1533;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_24826468_24826626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315183    GT:AD:DP:GQ:PL    0/1:31,27:58:68.18:68,0,939
16    24869833    rs62032815    C    T    372.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347898    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:405,33,0
16    24888299    rs141064922    G    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347898    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    24888646    rs11074656    T    C    5665.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.445;DB;DP=169;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9443;MQ=59.73;MQ0=0;MQRankSum=-0.461;QD=33.52;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=V112A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_24888579_24888684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545376    GT:AD:DP:GQ:PL    1/1:1,168:169:99:5665,384,0
16    24902194    rs274081    T    C    3421.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=30.28;SNPEFF_AMINO_ACID_CHANGE=F153;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_24902190_24902395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545376    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3422,271,0
16    24918048    rs17772929    C    T    1238.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.213;QD=30.96;ReadPosRankSum=1.646;SNPEFF_AMINO_ACID_CHANGE=R227C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_24917978_24918085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449109    GT:AD:DP:GQ:PL    1/1:1,39:40:93.29:1271,93,0
16    24919245    rs113206122    C    CAGGGA    11586.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;FS=0.0;HRun=0;HaplotypeScore=475.1487;IndelType=I;MQ=50.58;MQ0=0;QD=89.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347898    GT:AD:DP:GQ:PL    1/1:11,110:130:99:11587,376,0
16    24921854    .    A    ATT    158.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DP=12;FS=9.031;HRun=13;HaplotypeScore=84.5625;IndelType=I;MQ=55.96;MQ0=0;MQRankSum=-0.747;QD=13.18;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347898    GT:AD:DP:GQ:PL    0/1:6,6:12:2.44:196,0,2
16    25137289    rs7189229    G    C    1373.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.61;MQ0=4;QD=25.44;SNPEFF_AMINO_ACID_CHANGE=L2;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_25137284_25137447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380962    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1407,108,0
16    25137385    rs11861481    G    A    187.39    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=32;Dels=0.0;FS=5.961;HRun=0;HaplotypeScore=0.7887;MQ=47.83;MQ0=1;MQRankSum=-1.458;QD=5.86;ReadPosRankSum=-2.024;SNPEFF_AMINO_ACID_CHANGE=R34;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_25137284_25137447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380962    GT:AD:DP:GQ:PL    0/1:22,10:32:99:217,0,696
16    25137449    rs7188975    A    T    300.39    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.678;DB;DP=28;Dels=0.0;FS=4.678;HRun=0;HaplotypeScore=0.0;MQ=48.35;MQ0=2;MQRankSum=1.877;QD=10.73;ReadPosRankSum=-0.489;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCMT1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000380962    GT:AD:DP:GQ:PL    0/1:16,12:28:99:330,0,450
16    25137623    rs55774726    T    C    41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.67;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380962    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:71,0,24
16    25172307    rs111379361    A    ATT    481.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=161.5488;IndelType=I;MQ=52.39;MQ0=0;QD=22.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380962    GT:AD:DP:GQ:PL    1/1:1,11:21:56.04:524,56,0
16    25180610    rs6497812    G    A    1230.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.38;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380962    GT:AD:DP:GQ:PL    1/1:0,37:37:93.31:1264,93,0
16    25944700    rs4303490    A    G    419.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331351    GT:AD:DP:GQ:PL    1/1:0,14:15:33.11:453,33,0
16    27077922    rs6497990    A    T    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=C16orf82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418886    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    27078867    rs12446622    A    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=C16orf82;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418886    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    27226437    rs8054431    G    T    84.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=10.54;ReadPosRankSum=-2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286096    GT:AD:DP:GQ:PL    0/1:4,4:8:99:114,0,145
16    27227122    rs7405158    T    C    119.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.91;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286096    GT:AD:DP:GQ:PL    0/1:2,4:6:61.50:149,0,61
16    27227168    rs11645703    T    G    202.07    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=13.47;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286096    GT:AD:DP:GQ:PL    0/1:7,8:15:99:232,0,225
16    27236403    rs2958    G    A    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286096    GT:AD:DP:GQ:PL    0/1:2,2:4:60.11:68,0,60
16    27238034    rs34940876    C    T    249.15    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.71;QD=7.79;ReadPosRankSum=0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286096    GT:AD:DP:GQ:PL    0/1:19,13:32:99:279,0,568
16    27238110    rs1127228    C    T    471.55    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.22;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.29;QD=9.62;ReadPosRankSum=1.124;SNPEFF_AMINO_ACID_CHANGE=E177;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_27238041_27238157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMCE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361439    GT:AD:DP:GQ:PL    0/1:30,19:49:99:502,0,828
16    27244548    rs28456036    A    G    248.60    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=19.12;ReadPosRankSum=-1.855;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361439    GT:AD:DP:GQ:PL    0/1:5,8:13:99:279,0,171
16    27245712    rs34939984    C    T    185.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=18.57;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361439    GT:AD:DP:GQ:PL    0/1:4,6:10:70.25:216,0,70
16    27269023    rs7201652    T    C    163.95    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=13.66;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSMCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361439    GT:AD:DP:GQ:PL    0/1:5,7:12:99:194,0,172
16    27358098    rs2301807    A    C    342.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170630    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:375,30,0
16    27363686    rs3024608    G    C    94.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170630    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
16    27364158    rs3024610    C    T    232.31    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7781;MQ=57.9;MQ0=0;MQRankSum=-0.751;QD=25.81;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170630    GT:AD:DP:GQ:PL    0/1:1,8:9:1.61:261,0,2
16    27364200    rs3024611    A    C    125.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=25.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170630    GT:AD:DP:GQ:PL    1/1:0,4:5:12.04:158,12,0
16    27364233    rs3024612    G    A    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170630    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
16    27367334    rs4787423    C    T    244.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449195    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
16    27370454    rs3024658    A    G    132.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449195    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
16    27370932    rs138640688    AGTG    A    537.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=51.5456;IndelType=D;MQ=57.0;MQ0=0;QD=44.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449195    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:580,36,0
16    27371158    rs3024660    C    T    2081.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.25;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380925    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2115,159,0
16    27371949    rs3024668    A    G    1158.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380925    GT:AD:DP:GQ:PL    1/1:0,31:31:93.29:1192,93,0
16    27441283    rs179760    A    G    99.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL21R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337929    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:132,12,0
16    27487686    rs79257651    C    T    146    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.777;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=11.23;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356183    GT:AD:DP:GQ:PL    0/1:7,6:13:99:176,0,256
16    27510117    rs11452553    C    CA    1213.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=1;HaplotypeScore=58.6116;IndelType=I;MQ=60.74;MQ0=0;QD=41.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF3C1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356183    GT:AD:DP:GQ:PL    1/1:1,28:29:84.28:1255,84,0
16    27561584    rs4787969    G    A    333.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0556;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261588    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:367,27,0
16    27629661    rs4787980    G    C    229.39    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=25.49;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0556;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261588    GT:AD:DP:GQ:PL    0/1:1,8:9:16.57:259,0,17
16    27666204    rs233470    A    G    654.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0556;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261588    GT:AD:DP:GQ:PL    1/1:0,18:19:54.11:688,54,0
16    27772901    rs4787984    G    A    1227.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.71;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=A1267T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_27772734_27772911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0556;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261588    GT:AD:DP:GQ:PL    1/1:0,35:36:96.30:1261,96,0
16    27777831    rs8043555    A    G    120.84    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-1.505;QD=5.25;ReadPosRankSum=1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0556;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261588    GT:AD:DP:GQ:PL    0/1:17,6:23:99:151,0,545
16    27974418    rs2051742    T    C    394.58    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=4.056;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.206;QD=13.61;ReadPosRankSum=-1.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380898    GT:AD:DP:GQ:PL    0/1:16,13:29:99:425,0,480
16    27974487    rs2051743    T    C    608.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.367;DB;DP=40;Dels=0.0;FS=6.93;HRun=0;HaplotypeScore=0.9997;MQ=59.53;MQ0=0;MQRankSum=0.207;QD=15.21;ReadPosRankSum=1.505;SNPEFF_AMINO_ACID_CHANGE=A129;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_27974477_27974524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395724    GT:AD:DP:GQ:PL    0/1:16,24:40:99:638,0,427
16    28123226    rs205384    G    A    377.80    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.643;DB;DP=26;Dels=0.0;FS=3.674;HRun=0;HaplotypeScore=1.7719;MQ=58.2;MQ0=0;MQRankSum=1.003;QD=14.53;ReadPosRankSum=-1.826;SNPEFF_AMINO_ACID_CHANGE=H751;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28123138_28123327;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    0/1:12,14:26:99:408,0,361
16    28124081    rs205388    A    G    110.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=11.03;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    0/1:4,6:10:99:140,0,130
16    28132951    rs33048    T    C    1279.44    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=4.611;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=-1.267;QD=12.3;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    0/1:59,44:104:99:1309,0,1788
16    28133152    rs39998    C    A    199.26    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=9.96;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    0/1:13,7:20:99:229,0,475
16    28137248    rs39631    C    A    743.52    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.837;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.921;QD=16.52;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    0/1:21,24:45:99:774,0,590
16    28157351    rs28379290    T    C    1193.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1226,93,0
16    28167914    rs10445001    C    A    233.70    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9654;MQ=61.43;MQ0=0;MQRankSum=-0.556;QD=15.58;ReadPosRankSum=1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    0/1:7,8:15:99:264,0,226
16    28181306    rs28479048    A    G    374.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:407,30,0
16    28181378    rs9927275    C    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPO6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304658    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
16    28330636    rs34675302    A    G    167.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341901    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
16    28354090    rs609553    C    G    1734.29    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.009;DB;DP=152;Dels=0.0;FS=3.973;HRun=2;HaplotypeScore=1.8824;MQ=29.45;MQ0=1;MQRankSum=-1.182;QD=11.41;ReadPosRankSum=-0.829;SNPEFF_AMINO_ACID_CHANGE=P354;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28353876_28354509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-57A19.3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000533640    GT:AD:DP:GQ:PL    0/1:76,76:152:99:1764,0,2013
16    28354223    rs457403    G    A    644.38    MQFilter40    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=4.503;DB;DP=250;DS;Dels=0.0;FS=30.441;HRun=0;HaplotypeScore=5.557;MQ=16.27;MQ0=119;MQRankSum=3.224;QD=2.58;ReadPosRankSum=2.355;SNPEFF_AMINO_ACID_CHANGE=P310L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28353876_28354509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-57A19.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533640    GT:AD:DP:GQ:PL    0/1:165,85:250:99:674,0,1508
16    28356769    .    G    A    91.04    MQFilter40    AC=2;AF=1.00;AN=2;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.54;MQ0=13;QD=4.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-57A19.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532254    GT:AD:DP:GQ:PL    1/1:7,15:22:12.02:124,12,0
16    28468295    .    A    G    344.84    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DP=173;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4328;MQ=7.75;MQ0=111;MQRankSum=-1.534;QD=1.99;ReadPosRankSum=-0.498;SNPEFF_AMINO_ACID_CHANGE=L232P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28467693_28468347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452313    GT:AD:DP:GQ:PL    1/1:10,163:173:29.15:378,29,0
16    28489342    rs28374519    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357076    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
16    28508716    rs40832    T    C    182.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.34;SNPEFF_AMINO_ACID_CHANGE=V776A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28507438_28509317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328423    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:215,18,0
16    28596129    rs189493249    G    A    39.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=18;Dels=0.0;FS=0.0;HRun=19;HaplotypeScore=2.0899;MQ=45.47;MQ0=0;MQRankSum=-3.298;QD=2.2;ReadPosRankSum=2.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317058    GT:AD:DP:GQ:PL    0/1:9,9:18:69.64:70,0,173
16    28603393    rs27742    T    C    1444.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=33.67;MQ0=0;QD=30.74;SNPEFF_AMINO_ACID_CHANGE=K249E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28603264_28603461;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SULT1A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000533150    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1478,132,0
16    28604449    rs193654    A    G    322.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317058    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
16    28604480    rs12920841    G    A    129.69    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.091;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=8.11;ReadPosRankSum=0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317058    GT:AD:DP:GQ:PL    0/1:10,6:16:99:160,0,309
16    28615708    rs11074904    G    A    423.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314752    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:457,33,0
16    28617485    rs1801030    C    T    1726.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6335;MQ=37.09;MQ0=3;QD=25.03;SNPEFF_AMINO_ACID_CHANGE=V145M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28617377_28617557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350842    GT:AD:DP:GQ:PL    1/1:0,69:69:99:1760,147,0
16    28618238    rs7499134    A    G    2542.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314752    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2576,193,0
16    28631314    .    T    TTGTGTG    1239.90    PASS    AC=2;AF=1.00;AN=2;DP=20;FS=0.0;HRun=0;HaplotypeScore=136.8607;IndelType=I;MQ=39.95;MQ0=0;QD=62.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350842    GT:AD:DP:GQ:PL    1/1:8,10:20:42.14:1282,42,0
16    28631360    rs28410083    A    T    1401.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.46;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350842    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1434,114,0
16    28631585    rs1968752    T    G    400.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350842    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:433,33,0
16    28780970    rs77748785    G    A    372.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.53;MQ0=2;QD=16.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTB-134H23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357796    GT:AD:DP:GQ:PL    1/1:0,23:23:33.05:406,33,0
16    28780994    rs80119505    C    T    367.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.41;MQ0=2;QD=15.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTB-134H23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357796    GT:AD:DP:GQ:PL    1/1:0,23:23:33.05:401,33,0
16    28838073    rs12448482    A    G    601.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325215    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:634,48,0
16    28842311    rs4344749    A    G    725.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=52.57;MQ0=0;QD=21.98;SNPEFF_AMINO_ACID_CHANGE=Q413;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28842283_28842393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325215    GT:AD:DP:GQ:PL    1/1:1,32:33:60.18:758,60,0
16    28844068    rs7498491    T    A    1008.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=38.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325215    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1042,78,0
16    28845584    rs35725751    C    T    2060.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325215    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2093,163,0
16    28856819    rs8061877    C    T    1184.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.9;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUFM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313511    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1218,99,0
16    28883327    rs28433345    T    C    804.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8519;MQ=57.39;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322610    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:837,66,0
16    28906084    rs9931989    G    C    569.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357084    GT:AD:DP:GQ:PL    1/1:0,21:21:48.14:602,48,0
16    28913787    rs7189927    T    C    340.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357573    GT:AD:DP:GQ:PL    1/1:0,14:14:33.08:374,33,0
16    28914026    rs41292394    G    A    552.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357573    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:586,45,0
16    28915217    rs8046545    G    A    653.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357573    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:686,54,0
16    28915527    rs10499    G    A    1505.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357573    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1539,114,0
16    28917644    rs7188071    T    C    38.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
16    28922149    rs11646653    C    T    696.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357573    GT:AD:DP:GQ:PL    1/1:0,25:25:54.16:729,54,0
16    28925978    rs3924376    T    C    2001.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.445;MQ=58.61;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357573    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2034,165,0
16    28944396    rs2904880    C    G    738.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_AMINO_ACID_CHANGE=L174V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28944232_28944435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324662    GT:AD:DP:GQ:PL    1/1:0,25:25:57.19:771,57,0
16    28993049    rs6565300    A    C    1154.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311008    GT:AD:DP:GQ:PL    1/1:0,33:33:93.25:1188,93,0
16    28995757    rs7140    C    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354453    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    28997997    rs1131543    G    A    712.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=A119;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_28997978_28998035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454369    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:746,57,0
16    29001460    rs9929088    A    C    118.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354453    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
16    29088128    rs67548829    TACAACTATTGCTGTTATACTAAAGACCAATAGAAATAGCAAGATTAATTAAGATACCAGTTGAAA    T    2683.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=2865.3999;IndelType=D;MQ=42.81;MQ0=1;QD=55.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219758    GT:AD:DP:GQ:PL    1/1:1,47:47:99:2726,138,0
16    29088221    rs2442141    A    G    563.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3117;MQ=46.35;MQ0=0;QD=18.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219758    GT:AD:DP:GQ:PL    1/1:0,30:30:45.15:597,45,0
16    29105873    rs252264    T    C    185.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.74;MQ0=1;QD=23.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219758    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:218,18,0
16    29113263    rs149472124    C    T    2912.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=39.7;MQ0=4;QD=28.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415221    GT:AD:DP:GQ:PL    1/1:1,103:104:99:2946,238,0
16    29113497    rs66955531    AT    A    204.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DB;DP=18;FS=0.0;HRun=10;HaplotypeScore=68.1296;IndelType=D;MQ=47.19;MQ0=2;MQRankSum=1.107;QD=8.88;ReadPosRankSum=-1.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415221    GT:AD:DP:GQ:PL    1/1:6,16:18:18.60:246,19,0
16    29115577    rs36050267    G    C    672.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.14;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427965    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:705,60,0
16    29124421    rs1641997    T    C    2299.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8305;MQ=52.96;MQ0=0;QD=30.25;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427965    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2332,192,0
16    29124524    rs2430674    T    C    858.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427965    GT:AD:DP:GQ:PL    1/1:0,27:27:75.21:891,75,0
16    29127350    rs1540389    T    C    114.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.3;MQ0=1;QD=22.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009093.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427965    GT:AD:DP:GQ:PL    1/1:1,4:5:12.03:147,12,0
16    29332380    rs257878    T    C    2227.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.67;MQ0=0;QD=29.3;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_29332249_29332416;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398878    GT:AD:DP:GQ:PL    1/1:0,75:76:99:2260,196,0
16    29375985    .    C    CT    185.19    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DP=33;FS=4.158;HRun=14;HaplotypeScore=171.408;IndelType=I;MQ=49.43;MQ0=0;MQRankSum=0.75;QD=4.75;ReadPosRankSum=-0.547;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509141    GT:AD:DP:GQ:PL    0/1:24,13:33:99:224,0,273
16    29394552    rs145966436    G    T    1023.06    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.674;DB;DP=220;DS;Dels=0.0;FS=11.144;HRun=0;HaplotypeScore=4.5266;MQ=41.96;MQ0=13;MQRankSum=-1.051;QD=4.65;ReadPosRankSum=0.018;SNPEFF_AMINO_ACID_CHANGE=P567;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29392675_29395610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-231C14.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524087    GT:AD:DP:GQ:PL    0/1:159,60:220:99:1053,0,3809
16    29394748    .    T    C    66.09    MQFilter40;QDFilter2    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.832;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5449;MQ=13.46;MQ0=24;MQRankSum=2.492;QD=1.65;ReadPosRankSum=-0.34;SNPEFF_AMINO_ACID_CHANGE=H502R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29392675_29395610;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-231C14.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000524087    GT:AD:DP:GQ:PL    0/1:34,6:40:96.09:96,0,124
16    29394804    .    G    T    385    MQFilter40    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DP=120;Dels=0.0;FS=2.657;HRun=0;HaplotypeScore=1.81;MQ=25.43;MQ0=21;MQRankSum=2.294;QD=3.21;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=P483;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29392675_29395610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-231C14.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524087    GT:AD:DP:GQ:PL    0/1:102,18:120:99:415,0,1082
16    29394822    .    A    G    582.94    MQFilter40    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=2.306;DP=135;Dels=0.0;FS=11.345;HRun=1;HaplotypeScore=3.1127;MQ=26.61;MQ0=11;MQRankSum=2.674;QD=4.32;ReadPosRankSum=0.331;SNPEFF_AMINO_ACID_CHANGE=S477;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29392675_29395610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-231C14.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000524087    GT:AD:DP:GQ:PL    0/1:109,26:135:99:613,0,1259
16    29437061    .    TA    T    122.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.034;DP=12;FS=0.0;HRun=13;HaplotypeScore=42.8079;IndelType=D;MQ=60.9;MQ0=0;MQRankSum=-0.555;QD=10.18;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398878    GT:AD:DP:GQ:PL    0/1:3,9:12:51.72:161,0,52
16    29437170    rs144236784    T    G    957.39    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.849;DB;DP=51;Dels=0.0;FS=2.564;HRun=1;HaplotypeScore=0.8667;MQ=54.52;MQ0=0;MQRankSum=0.55;QD=18.77;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398878    GT:AD:DP:GQ:PL    0/1:20,31:51:99:987,0,571
16    29438361    rs151067447    CAT    C    205.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=25.4221;IndelType=D;MQ=25.43;MQ0=1;MQRankSum=-0.742;QD=17.09;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398878    GT:AD:DP:GQ:PL    0/1:4,8:7:35.17:244,0,35
16    29439531    rs142007221    CT    C    598.71    PASS    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=5.778;DB;DP=46;FS=9.519;HRun=2;HaplotypeScore=196.3058;IndelType=D;MQ=30.26;MQ0=3;MQRankSum=1.301;QD=8.55;ReadPosRankSum=2.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398878    GT:AD:DP:GQ:PL    0/1:47,23:46:99:638,0,989
16    29446943    .    C    T    558.93    MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=4.63;DP=148;Dels=0.0;FS=1.194;HRun=0;HaplotypeScore=0.5784;MQ=18.14;MQ0=37;MQRankSum=0.486;QD=3.78;ReadPosRankSum=-0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398878    GT:AD:DP:GQ:PL    0/1:100,48:148:99:589,0,899
16    29496834    .    C    T    34.58    MQFilter40;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DP=247;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=10.02;MQ0=165;MQRankSum=-2.058;QD=0.14;ReadPosRankSum=-0.871;SNPEFF_AMINO_ACID_CHANGE=K147;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29495010_29497154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-231C14.4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354563    GT:AD:DP:GQ:PL    0/1:207,40:247:64.57:65,0,850
16    29548475    .    C    A    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=7.89;MQ0=25;QD=1.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=snoU13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459406    GT:AD:DP:GQ:PL    1/1:25,2:27:6.02:67,6,0
16    29576590    .    G    C    501.07    MQFilter40    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=4.374;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.9;MQ0=26;MQRankSum=0.613;QD=5.57;ReadPosRankSum=0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009086.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447140    GT:AD:DP:GQ:PL    0/1:53,37:90:99:531,0,592
16    29576811    .    A    G    114.44    MQFilter40;QDFilter2    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DP=241;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=8.82;MQ0=178;MQRankSum=-0.182;QD=0.47;ReadPosRankSum=-1.358;SNPEFF_AMINO_ACID_CHANGE=N69;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29576672_29576827;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009086.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447140    GT:AD:DP:GQ:PL    0/1:179,61:241:99:144,0,278
16    29606414    rs58651091    A    G    40.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=54.36;MQ0=0;MQRankSum=0.727;QD=10.25;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009086.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447140    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:71,0,30
16    29644424    rs77185413    C    T    45.76    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.93;MQ0=0;MQRankSum=-0.727;QD=11.44;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,3:4:30.21:76,0,30
16    29644494    rs2531566    T    C    107.09    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.17;MQ0=0;MQRankSum=-0.825;QD=9.74;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,5:11:99:137,0,215
16    29644794    rs11150561    A    G    602.39    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=2.253;DB;DP=50;Dels=0.0;FS=6.927;HRun=0;HaplotypeScore=0.0;MQ=42.84;MQ0=1;MQRankSum=-5.95;QD=12.05;ReadPosRankSum=1.828;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,29:50:99:632,0,721
16    29645078    rs12597368    C    A    209.98    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.656;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.31;MQ0=2;MQRankSum=-0.716;QD=7.78;ReadPosRankSum=-1.252;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,11:27:99:240,0,518
16    29645104    rs71834127    CA    C    137.76    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=0.646;DB;DP=36;FS=2.291;HRun=14;HaplotypeScore=240.3594;IndelType=D;MQ=51.49;MQ0=3;MQRankSum=1.077;QD=3.53;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,15:36:99:177,0,210
16    29645440    rs8063200    T    C    78.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.8;MQ0=0;MQRankSum=0.0;QD=13.15;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:48.41:109,0,48
16    29647342    rs9926100    T    C    76.71    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=10.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,4:7:84.52:107,0,85
16    29647700    .    C    T    391.37    MQFilter40    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DP=177;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6006;MQ=13.65;MQ0=94;MQRankSum=0.735;QD=2.21;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:124,53:177:99:421,0,487
16    29675473    .    A    G    641.13    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.723;DP=62;Dels=0.0;FS=3.737;HRun=0;HaplotypeScore=0.9993;MQ=59.25;MQ0=0;MQRankSum=1.738;QD=10.34;ReadPosRankSum=-1.371;SNPEFF_AMINO_ACID_CHANGE=T142A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29675016_29681811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360121    GT:AD:DP:GQ:PL    0/1:36,25:62:99:671,0,1120
16    29675855    rs34710374    T    C    362.30    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.645;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.645;QD=12.94;ReadPosRankSum=0.737;SNPEFF_AMINO_ACID_CHANGE=V269A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29675016_29681811;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360121    GT:AD:DP:GQ:PL    0/1:15,13:28:99:392,0,512
16    29705854    rs9936468    C    T    219.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219771    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:253,21,0
16    29705974    .    C    CT    316.62    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.381;DP=21;FS=0.0;HRun=2;HaplotypeScore=63.2945;IndelType=I;MQ=59.69;MQ0=0;MQRankSum=-0.416;QD=15.08;ReadPosRankSum=-1.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219771    GT:AD:DP:GQ:PL    0/1:11,10:21:99:356,0,308
16    29708350    rs9932770    A    G    638.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.39;SNPEFF_AMINO_ACID_CHANGE=T195A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29708317_29708448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPRT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395384    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:671,51,0
16    29790669    rs235634    T    A    1329.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400752    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1362,105,0
16    29790678    rs183527    T    G    1146.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400752    GT:AD:DP:GQ:PL    1/1:0,34:34:96.30:1179,96,0
16    29790709    rs12933548    C    T    567.94    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.042;DB;DP=30;Dels=0.0;FS=3.155;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.084;QD=18.93;ReadPosRankSum=1.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400752    GT:AD:DP:GQ:PL    0/1:13,17:30:99:598,0,433
16    29790767    rs235635    A    G    812.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400752    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:845,66,0
16    29790864    rs235636    G    A    1160.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=G32S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29790826_29790958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400752    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1193,90,0
16    29791561    rs235637    T    G    1731.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_AMINO_ACID_CHANGE=L109V;SNPEFF_CODON_CHANGE=Tta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29791425_29791839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400752    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1765,135,0
16    29791721    rs235638    G    C    1089.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5741;MQ=58.05;MQ0=0;QD=30.26;SNPEFF_AMINO_ACID_CHANGE=S162T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29791425_29791839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400752    GT:AD:DP:GQ:PL    1/1:0,36:36:84.26:1122,84,0
16    29791818    rs35586094    TA    T    189.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=8;HaplotypeScore=41.1587;IndelType=D;MQ=58.77;MQ0=0;QD=18.9;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZG16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400752    GT:AD:DP:GQ:PL    1/1:2,8:10:24.04:231,24,0
16    29809634    rs6145811    TACAC    T    782.68    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=302.4916;IndelType=D;MQ=46.35;MQ0=0;MQRankSum=-0.32;QD=20.6;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160827    GT:AD:DP:GQ:PL    0/1:15,19:38:65.07:822,0,65
16    29809673    rs67578835    ATTTC    A    1048.37    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=2.741;DB;DP=61;FS=1.125;HRun=0;HaplotypeScore=477.2911;IndelType=D;MQ=51.56;MQ0=0;MQRankSum=-2.585;QD=17.19;ReadPosRankSum=1.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160827    GT:AD:DP:GQ:PL    0/1:37,24:61:99:1087,0,2029
16    29811319    rs235648    C    T    1350.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.93;SNPEFF_AMINO_ACID_CHANGE=I342;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29811234_29811369;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400751    GT:AD:DP:GQ:PL    1/1:0,40:41:99:1383,105,0
16    29814234    rs2450399    G    A    2974.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=34.59;SNPEFF_AMINO_ACID_CHANGE=V407;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29814090_29814258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400751    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3008,223,0
16    29817998    rs111993640    C    T    201.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_16_29817855_29818214;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219782    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
16    29825126    rs11150573    T    C    1503.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.82;MQ0=0;QD=34.96;SNPEFF_AMINO_ACID_CHANGE=L251;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29824311_29827201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300797    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1536,117,0
16    29828710    rs8058824    C    G    31.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.47;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300797    GT:AD:DP:GQ:PL    0/1:4,3:7:61.26:61,0,141
16    29830829    rs11864180    T    C    1100.44    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=2.111;DB;DP=83;Dels=0.0;FS=8.324;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=0.033;QD=13.26;ReadPosRankSum=-0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300797    GT:AD:DP:GQ:PL    0/1:40,43:83:99:1130,0,1208
16    29852860    rs3815824    C    T    161.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=11.54;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357402    GT:AD:DP:GQ:PL    0/1:8,6:14:99:192,0,207
16    29855731    rs9939514    G    A    466.75    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=35;Dels=0.0;FS=3.554;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.34;ReadPosRankSum=1.734;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452209    GT:AD:DP:GQ:PL    0/1:19,16:35:99:497,0,647
16    29857316    rs4787480    G    A    298.56    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.566;DB;DP=34;Dels=0.0;FS=1.854;HRun=1;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=0.866;QD=8.78;ReadPosRankSum=0.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452209    GT:AD:DP:GQ:PL    0/1:21,13:34:99:329,0,641
16    29872361    rs3815822    G    A    469.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.272;DB;DP=34;Dels=0.0;FS=4.746;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.378;QD=13.81;ReadPosRankSum=-2.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDIPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219789    GT:AD:DP:GQ:PL    0/1:17,17:34:99:500,0,475
16    29906546    rs4787484    C    T    383.86    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.756;DB;DP=60;Dels=0.0;FS=7.323;HRun=0;HaplotypeScore=2.7997;MQ=48.56;MQ0=0;MQRankSum=-0.557;QD=6.4;ReadPosRankSum=-0.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308713    GT:AD:DP:GQ:PL    0/1:33,27:60:99:414,0,739
16    29907298    rs71888113    G    GT    450.31    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.149;DB;DP=20;FS=0.0;HRun=4;HaplotypeScore=60.7746;IndelType=I;MQ=59.39;MQ0=0;MQRankSum=-1.184;QD=22.52;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308713    GT:AD:DP:GQ:PL    0/1:7,13:20:99:489,0,157
16    29908947    rs79142080    TCTGA    T    215.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=45.4112;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=-0.47;QD=21.56;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308713    GT:AD:DP:GQ:PL    0/1:5,5:10:99:255,0,333
16    29934754    rs12596042    T    A    98.75    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.597;QD=8.98;ReadPosRankSum=-0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ASPHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414952    GT:AD:DP:GQ:PL    0/1:4,7:11:99:129,0,136
16    29937081    rs5816505    G    GA    198.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=16.6272;IndelType=I;MQ=56.04;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308768    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:240,15,0
16    29982611    rs10624125    A    ATTTTCCC    1377.19    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.971;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=117.0665;IndelType=I;MQ=41.96;MQ0=0;MQRankSum=-3.253;QD=65.58;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM219;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279396    GT:AD:DP:GQ:PL    0/1:12,8:21:99:1416,0,316
16    29982961    rs9932702    C    T    413.06    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=27;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.607;QD=15.3;ReadPosRankSum=0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM219;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279396    GT:AD:DP:GQ:PL    0/1:14,13:27:99:443,0,395
16    29993108    rs11642046    C    G    591.94    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.447;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.95;MQ0=0;MQRankSum=-0.353;QD=13.45;ReadPosRankSum=-2.885;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279394    GT:AD:DP:GQ:PL    0/1:20,24:44:99:622,0,576
16    29994736    rs3814884    T    A    1306.47    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.278;DB;DP=104;Dels=0.0;FS=7.445;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.545;QD=12.56;ReadPosRankSum=-0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279394    GT:AD:DP:GQ:PL    0/1:59,45:104:99:1336,0,2139
16    29994922    rs3814883    C    T    2710.77    HaplotypeScoreFilter13    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.848;DB;DP=245;DS;Dels=0.0;FS=8.69;HRun=0;HaplotypeScore=13.8009;MQ=58.25;MQ0=0;MQRankSum=1.155;QD=11.06;ReadPosRankSum=-1.42;SNPEFF_AMINO_ACID_CHANGE=S453;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29994824_29994985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279394    GT:AD:DP:GQ:PL    0/1:128,116:245:99:2741,0,2545
16    29998200    rs4077410    A    G    452.75    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.371;DB;DP=29;Dels=0.0;FS=5.636;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.787;QD=15.61;ReadPosRankSum=-0.112;SNPEFF_AMINO_ACID_CHANGE=T756;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_29998165_29999502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543033    GT:AD:DP:GQ:PL    0/1:11,18:29:99:483,0,363
16    30000901    rs3814881    G    A    508.15    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.743;DB;DP=28;Dels=0.0;FS=1.51;HRun=0;HaplotypeScore=0.8667;MQ=59.17;MQ0=0;MQRankSum=-0.168;QD=18.15;ReadPosRankSum=-0.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIRIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279392    GT:AD:DP:GQ:PL    0/1:10,18:28:99:538,0,301
16    30017895    rs3814880    T    C    220.70    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.088;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.682;QD=7.88;ReadPosRankSum=1.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304516    GT:AD:DP:GQ:PL    0/1:18,10:28:99:251,0,583
16    30018500    rs3935873    C    T    268.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;Dels=0.0;FS=1.957;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=13.41;ReadPosRankSum=0.939;SNPEFF_AMINO_ACID_CHANGE=Q216;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30018494_30018620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOC2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350119    GT:AD:DP:GQ:PL    0/1:10,10:20:99:298,0,243
16    30018720    rs12921753    C    T    78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=13.0;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304516    GT:AD:DP:GQ:PL    0/1:3,3:6:57.70:108,0,58
16    30021402    rs1140239    C    T    250.32    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.017;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4726;MQ=51.99;MQ0=0;MQRankSum=-2.732;QD=6.26;ReadPosRankSum=-0.149;SNPEFF_AMINO_ACID_CHANGE=G48S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30021282_30021556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOC2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350119    GT:AD:DP:GQ:PL    0/1:18,22:40:99:280,0,533
16    30037128    rs11544328    A    C    1296.19    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=5.208;DB;DP=84;Dels=0.0;FS=1.009;HRun=3;HaplotypeScore=1.5592;MQ=59.73;MQ0=0;MQRankSum=0.297;QD=15.43;ReadPosRankSum=-0.595;SNPEFF_AMINO_ACID_CHANGE=G153;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30037047_30037142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM57B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380495    GT:AD:DP:GQ:PL    0/1:37,47:84:99:1326,0,1021
16    30041966    rs3814878    A    G    32.60    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.66;ReadPosRankSum=-1.495;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_30041724_30042194;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM57B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380495    GT:AD:DP:GQ:PL    0/1:5,2:7:62.59:63,0,153
16    30078492    rs9783783    G    C    232.50    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.167;DB;DP=42;Dels=0.0;FS=2.386;HRun=0;HaplotypeScore=3.7832;MQ=59.0;MQ0=0;MQRankSum=-0.411;QD=5.54;ReadPosRankSum=1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338110    GT:AD:DP:GQ:PL    0/1:28,12:42:99:262,0,932
16    30081367    rs2071390    G    T    222.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=21;Dels=0.0;FS=5.651;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.173;QD=10.61;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338110    GT:AD:DP:GQ:PL    0/1:12,9:21:99:253,0,363
16    30093779    rs2278557    C    G    528.48    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.544;DB;DP=40;Dels=0.0;FS=1.384;HRun=0;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=0.298;QD=13.21;ReadPosRankSum=0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279386    GT:AD:DP:GQ:PL    0/1:21,19:40:99:558,0,622
16    30095236    rs11644459    C    T    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279386    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
16    30096468    rs71724227    T    TG    247.19    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.062;DB;DP=22;FS=0.0;HRun=8;HaplotypeScore=51.8204;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.096;QD=11.24;ReadPosRankSum=-0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279386    GT:AD:DP:GQ:PL    0/1:12,10:22:99:286,0,215
16    30097630    rs2289292    C    T    163.80    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8499;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.92;ReadPosRankSum=-0.225;SNPEFF_AMINO_ACID_CHANGE=P409;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30097117_30097759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000279386    GT:AD:DP:GQ:PL    0/1:6,9:15:99:194,0,146
16    30102802    rs3809624    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398838    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    30119525    rs8061772    C    A    1117.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=38.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360688    GT:AD:DP:GQ:PL    1/1:0,28:29:84.28:1151,84,0
16    30198151    rs1132812    A    G    142.69    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.608;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.865;QD=10.19;ReadPosRankSum=-1.739;SNPEFF_AMINO_ACID_CHANGE=P112;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30198137_30198266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CORO1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219150    GT:AD:DP:GQ:PL    0/1:6,8:14:99:173,0,175
16    30208527    rs2304624    C    T    330.01    MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=59;Dels=0.0;FS=1.274;HRun=0;HaplotypeScore=1.782;MQ=22.81;MQ0=8;MQRankSum=-0.852;QD=5.59;ReadPosRankSum=-1.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLX1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251303    GT:AD:DP:GQ:PL    0/1:38,21:59:99:360,0,684
16    30292500    rs147462150    A    T    533.59    MQFilter40    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.277;DB;DP=38;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9947;MQ=34.56;MQ0=0;MQRankSum=1.354;QD=14.04;ReadPosRankSum=0.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-347C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411546    GT:AD:DP:GQ:PL    0/1:13,25:38:99:564,0,257
16    30293117    .    CT    C    30.13    QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=2.953;DP=36;FS=0.0;HRun=12;HaplotypeScore=109.5144;IndelType=D;MQ=36.17;MQ0=3;MQRankSum=-2.008;QD=0.77;ReadPosRankSum=-0.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-347C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411546    GT:AD:DP:GQ:PL    0/1:32,7:36:69.16:69,0,638
16    30376691    rs4500754    G    A    249.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.523;DB;DP=21;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=0.0;MQ=55.45;MQ0=0;MQRankSum=1.741;QD=11.87;ReadPosRankSum=1.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TBC1D10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409939    GT:AD:DP:GQ:PL    0/1:12,9:21:99:279,0,310
16    30380486    rs4238961    T    C    93.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=7.81;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TBC1D10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409939    GT:AD:DP:GQ:PL    0/1:8,4:12:99:124,0,276
16    30386262    rs8046445    C    T    278.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321367    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:311,24,0
16    30390314    rs12447833    T    C    604.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.99;MQ0=0;QD=31.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322861    GT:AD:DP:GQ:PL    1/1:0,19:19:51.11:637,51,0
16    30393660    rs4787643    G    A    1693.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_AMINO_ACID_CHANGE=A10;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30393596_30393686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321367    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1726,126,0
16    30393771    rs4788409    G    A    482.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=37.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLPF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322861    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:515,39,0
16    30407269    rs13333093    C    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320159    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
16    30408765    rs12921440    C    T    3405.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.77;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=A190V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30408651_30410681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000495929    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3406,253,0
16    30410445    rs4788413    C    T    571.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=33.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524644    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:605,45,0
16    30495412    rs2285459    T    C    1924.50    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.695;DB;DP=163;Dels=0.0;FS=0.613;HRun=1;HaplotypeScore=3.6638;MQ=59.86;MQ0=0;MQRankSum=1.573;QD=11.81;ReadPosRankSum=-0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356798    GT:AD:DP:GQ:PL    0/1:90,73:163:99:1954,0,2814
16    30495657    rs7197010    T    C    476.79    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.172;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=14.9;ReadPosRankSum=-1.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454514    GT:AD:DP:GQ:PL    0/1:14,18:32:99:507,0,464
16    30500761    rs3087438    G    A    239.92    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.456;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.608;QD=12.0;ReadPosRankSum=-0.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356798    GT:AD:DP:GQ:PL    0/1:11,9:20:99:270,0,314
16    30505513    rs4350585    A    G    735.78    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DB;DP=76;Dels=0.0;FS=3.397;HRun=0;HaplotypeScore=0.9665;MQ=59.7;MQ0=0;MQRankSum=0.275;QD=9.68;ReadPosRankSum=-0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356798    GT:AD:DP:GQ:PL    0/1:45,31:76:99:766,0,1218
16    30507972    rs28708641    T    C    74.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=10.64;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356798    GT:AD:DP:GQ:PL    0/1:2,5:7:68.41:104,0,68
16    30510571    rs1557672    C    T    688.92    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.691;DB;DP=76;Dels=0.0;FS=4.594;HRun=1;HaplotypeScore=1.7334;MQ=59.39;MQ0=0;MQRankSum=-0.753;QD=9.06;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356798    GT:AD:DP:GQ:PL    0/1:46,29:76:99:719,0,1376
16    30516492    rs2073917    A    G    66.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356798    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:98,9,0
16    30522152    rs3087443    G    A    285.26    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=24;Dels=0.0;FS=4.669;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.142;QD=11.89;ReadPosRankSum=0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356798    GT:AD:DP:GQ:PL    0/1:14,10:24:99:315,0,446
16    30536672    rs3751847    A    G    653.89    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=53;Dels=0.0;FS=1.093;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.33;QD=12.34;ReadPosRankSum=-0.48;SNPEFF_AMINO_ACID_CHANGE=C232;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30536621_30537372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF768;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538507    GT:AD:DP:GQ:PL    0/1:26,27:53:99:684,0,842
16    30536918    rs10871453    C    G    1369.75    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.395;DB;DP=140;Dels=0.0;FS=5.349;HRun=0;HaplotypeScore=8.4513;MQ=59.87;MQ0=0;MQRankSum=-0.264;QD=9.78;ReadPosRankSum=1.289;SNPEFF_AMINO_ACID_CHANGE=E150D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30536621_30537372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF768;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538507    GT:AD:DP:GQ:PL    0/1:85,55:140:99:1400,0,2491
16    30724070    rs4889500    G    T    1588.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=R688;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30724000_30724136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262518    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1622,123,0
16    30724221    rs4889501    C    T    319.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262518    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:353,27,0
16    30731272    rs10153105    G    C    466.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262518    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:500,39,0
16    30732406    rs1470129    C    G    624.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262518    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:657,51,0
16    30734963    rs4889502    C    A    3041.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6527;MQ=59.53;MQ0=0;MQRankSum=-0.811;QD=30.72;ReadPosRankSum=-0.737;SNPEFF_AMINO_ACID_CHANGE=S1248;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30734905_30736403;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344771    GT:AD:DP:GQ:PL    1/1:5,94:99:99:3075,238,0
16    30740142    rs2053426    T    C    691.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=36.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483083    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:724,54,0
16    30740333    rs117480926    A    G    699.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.881;DB;DP=54;Dels=0.0;FS=5.608;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.543;QD=12.95;ReadPosRankSum=-0.294;SNPEFF_AMINO_ACID_CHANGE=E1744G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30740287_30740552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344771    GT:AD:DP:GQ:PL    0/1:27,27:54:99:729,0,798
16    30744826    rs62057183    C    T    449.14    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DB;DP=25;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.765;QD=17.97;ReadPosRankSum=-1.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262518    GT:AD:DP:GQ:PL    0/1:11,14:25:99:479,0,378
16    30760364    .    G    C    31.82    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=10.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380361    GT:AD:DP:GQ:PL    1/1:0,2:3:6.01:63,6,0
16    30762640    rs4889504    C    T    669.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328273    GT:AD:DP:GQ:PL    1/1:0,22:22:57.16:702,57,0
16    30768492    rs71820772    GCTCTGGC    G    952.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=189.347;IndelType=D;MQ=49.3;MQ0=0;QD=38.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354963    GT:AD:DP:GQ:PL    1/1:9,16:25:45.15:994,45,0
16    30770267    rs7188077    C    G    1475.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545809    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1508,114,0
16    30773822    rs1550477    T    C    161.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424889    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
16    30779716    rs7195142    A    G    895.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7046;MQ=59.2;MQ0=0;QD=30.88;SNPEFF_AMINO_ACID_CHANGE=Q307R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30779424_30779851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402121    GT:AD:DP:GQ:PL    1/1:0,29:29:78.21:928,78,0
16    30780828    rs4889506    A    G    525.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_AMINO_ACID_CHANGE=L163;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30780796_30780921;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538323    GT:AD:DP:GQ:PL    1/1:0,20:20:42.11:559,42,0
16    30832463    rs6565205    A    C    449.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:483,36,0
16    30832475    rs6565206    T    C    473.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:507,39,0
16    30832701    rs8045550    A    C    1869.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1903,144,0
16    30833246    rs9319587    C    T    108.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.12;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:51.27:139,0,51
16    30833272    rs8046609    A    G    239.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.66;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:273,21,0
16    30833321    rs8046001    C    T    37.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=10.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.59;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,2:5:67.96:68,0,81
16    30833425    rs4889510    G    C    90.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    30934075    rs3813020    G    A    118.11    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=13.12;ReadPosRankSum=1.159;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338343    GT:AD:DP:GQ:PL    0/1:4,5:9:99:148,0,109
16    30938811    rs12930545    A    G    62.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.96;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338343    GT:AD:DP:GQ:PL    0/1:6,3:9:92.63:93,0,207
16    30941160    rs147901631    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.66;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FBXL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338343    GT:AD:DP:GQ:PL    0/1:2,2:4:64.74:69,0,65
16    30964940    rs9926903    A    G    4326.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5271;MQ=57.25;MQ0=0;QD=28.1;SNPEFF_AMINO_ACID_CHANGE=Q221;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30964506_30966259;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORAI3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318663    GT:AD:DP:GQ:PL    1/1:0,154:154:99:4327,340,0
16    30965308    rs11647243    G    A    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=8.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORAI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420438    GT:AD:DP:GQ:PL    0/1:1,2:4:32.20:65,0,32
16    30980902    rs897986    T    C    152.84    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.383;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.367;MQ=59.23;MQ0=0;MQRankSum=-1.008;QD=5.09;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262519    GT:AD:DP:GQ:PL    0/1:22,8:30:99:183,0,788
16    30999142    rs9938550    A    G    511.03    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.126;DB;DP=71;Dels=0.0;FS=3.685;HRun=0;HaplotypeScore=0.9998;MQ=59.74;MQ0=0;MQRankSum=-0.425;QD=7.2;ReadPosRankSum=-1.488;SNPEFF_AMINO_ACID_CHANGE=T250A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30999089_31000473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD3B7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000297679    GT:AD:DP:GQ:PL    0/1:48,23:71:99:541,0,1534
16    30999198    rs17849880    C    T    1254.11    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.363;DB;DP=84;Dels=0.0;FS=1.78;HRun=0;HaplotypeScore=0.7887;MQ=59.45;MQ0=0;MQRankSum=-0.023;QD=14.93;ReadPosRankSum=0.005;SNPEFF_AMINO_ACID_CHANGE=Y268;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_30999089_31000473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD3B7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000297679    GT:AD:DP:GQ:PL    0/1:39,45:84:99:1284,0,1108
16    31004812    rs12445568    T    C    346.37    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.201;DB;DP=40;Dels=0.0;FS=13.889;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.109;QD=8.66;ReadPosRankSum=0.356;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD3B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262520    GT:AD:DP:GQ:PL    0/1:23,17:40:99:376,0,708
16    31004926    rs7194921    C    T    188.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD3B7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262520    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:221,18,0
16    31012781    rs12920772    G    A    54.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.406;QD=9.14;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215095    GT:AD:DP:GQ:PL    0/1:3,3:6:80.36:85,0,80
16    31012813    rs61239537    G    T    140.23    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.324;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.872;QD=9.35;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215095    GT:AD:DP:GQ:PL    0/1:7,8:15:99:170,0,216
16    31044683    rs58726213    A    G    257.16    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=17;Dels=0.0;FS=3.256;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=15.13;ReadPosRankSum=1.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394998    GT:AD:DP:GQ:PL    0/1:7,10:17:99:287,0,190
16    31049155    rs55979739    A    G    70.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.8;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457779    GT:AD:DP:GQ:PL    0/1:4,4:8:99:100,0,143
16    31050023    rs732173    C    A    148.02    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.529;QD=12.34;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457779    GT:AD:DP:GQ:PL    0/1:5,7:12:99:178,0,132
16    31050033    rs732172    C    T    106.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.098;QD=10.6;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457779    GT:AD:DP:GQ:PL    0/1:5,5:10:99:136,0,139
16    31072909    rs8046978    G    A    296.42    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=37;Dels=0.0;FS=3.12;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.893;QD=8.01;ReadPosRankSum=-0.239;SNPEFF_AMINO_ACID_CHANGE=A33T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31072813_31073451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC135050.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417110    GT:AD:DP:GQ:PL    0/1:24,13:37:99:326,0,762
16    31075708    rs2032917    C    G    1351.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.98;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=V25L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31075134_31075802;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF668;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300849    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1385,108,0
16    31090407    rs35713203    G    C    291.12    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.651;DB;DP=23;Dels=0.0;FS=4.669;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;MQRankSum=-0.217;QD=12.66;ReadPosRankSum=0.403;SNPEFF_AMINO_ACID_CHANGE=G921A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31087567_31093022;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF646;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300850    GT:AD:DP:GQ:PL    0/1:13,10:23:99:321,0,447
16    31091209    rs3751855    T    C    230.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=16;Dels=0.0;FS=2.027;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-2.048;QD=14.39;ReadPosRankSum=0.788;SNPEFF_AMINO_ACID_CHANGE=T1188;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31087567_31093022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF646;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300850    GT:AD:DP:GQ:PL    0/1:8,8:16:99:260,0,205
16    31092075    rs7196726    G    A    149.18    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.953;QD=5.97;ReadPosRankSum=0.635;SNPEFF_AMINO_ACID_CHANGE=G1477D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31087567_31093022;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF646;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300850    GT:AD:DP:GQ:PL    0/1:18,7:25:99:179,0,564
16    31095171    rs11865038    C    T    93.91    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=8.54;ReadPosRankSum=-1.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492427    GT:AD:DP:GQ:PL    0/1:6,5:11:99:124,0,194
16    31097574    rs4889535    G    C    572.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-196G11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529564    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:606,48,0
16    31105353    rs17708472    G    A    221.25    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=1.214;QD=22.13;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-196G11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529564    GT:AD:DP:GQ:PL    0/1:3,7:10:92.17:251,0,92
16    31121793    rs14235    G    A    589.60    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.075;DB;DP=35;Dels=0.0;FS=1.852;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-1.11;QD=16.85;ReadPosRankSum=1.178;SNPEFF_AMINO_ACID_CHANGE=T205;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31121722_31121820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219794    GT:AD:DP:GQ:PL    0/1:13,22:35:99:620,0,407
16    31122229    rs1549296    C    T    315.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=28.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484226    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:349,27,0
16    31131337    rs4889621    T    C    162.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KAT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543774    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
16    31131614    rs4527034    A    G    584.76    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.124;DB;DP=62;Dels=0.0;FS=1.077;HRun=3;HaplotypeScore=2.2424;MQ=58.88;MQ0=0;MQRankSum=1.486;QD=9.43;ReadPosRankSum=-1.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KAT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543774    GT:AD:DP:GQ:PL    0/1:36,26:62:99:615,0,1114
16    31138445    rs72785553    G    A    515.85    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.406;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=12.58;ReadPosRankSum=-0.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317508    GT:AD:DP:GQ:PL    0/1:23,18:41:99:546,0,673
16    31141826    rs1549295    A    G    793.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_AMINO_ACID_CHANGE=P352;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31141777_31141927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KAT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219797    GT:AD:DP:GQ:PL    1/1:0,25:25:66.18:827,66,0
16    31141880    rs1549294    A    G    800.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.66;SNPEFF_AMINO_ACID_CHANGE=L370;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31141777_31141927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KAT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219797    GT:AD:DP:GQ:PL    1/1:0,27:27:60.20:834,60,0
16    31141993    rs1549293    C    T    450.51    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=29;Dels=0.0;FS=12.657;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=15.53;ReadPosRankSum=0.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317508    GT:AD:DP:GQ:PL    0/1:14,15:29:99:481,0,474
16    31142271    rs17855606    A    G    72.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.02;ReadPosRankSum=1.92;SNPEFF_AMINO_ACID_CHANGE=I454M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31142067_31142680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KAT8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448516    GT:AD:DP:GQ:PL    0/1:6,3:9:99:102,0,157
16    31142381    rs2855479    A    G    250.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317508    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
16    31143993    rs45619735    C    T    582.90    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.428;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=58.39;MQ0=0;MQRankSum=-0.872;QD=20.1;ReadPosRankSum=0.448;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KAT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219797    GT:AD:DP:GQ:PL    0/1:9,20:29:99:613,0,284
16    31151521    rs8047469    A    G    388.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;QD=19.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268281    GT:AD:DP:GQ:PL    1/1:0,20:20:39.07:421,39,0
16    31152717    rs79540642    T    C    1685.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268281    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1718,126,0
16    31153105    rs1549300    A    G    1899.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=D566;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31153044_31153281;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268281    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1932,141,0
16    31154146    rs1549299    G    A    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.48;SNPEFF_AMINO_ACID_CHANGE=S423;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31154058_31154314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268281    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    31191482    rs929867    A    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487045    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
16    31193942    rs741810    C    A    1824.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=G49;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31193834_31193985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254108    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1857,138,0
16    31196105    rs2735393    T    C    310.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.74;MQ0=0;QD=28.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487045    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:343,30,0
16    31196141    rs71771375    GTCTTTTTACTT    G    2164.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=354.78;IndelType=D;MQ=36.79;MQ0=0;QD=77.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487045    GT:AD:DP:GQ:PL    1/1:3,25:28:75.25:2206,75,0
16    31232437    rs9927298    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322122    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    31342608    rs7188189    T    C    263.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9997;MQ=51.13;MQ0=0;QD=18.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287497    GT:AD:DP:GQ:PL    1/1:0,14:14:24.07:296,24,0
16    31366758    rs9938765    C    T    204.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268296    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
16    31371193    rs4264407    C    G    1786.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268296    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1819,138,0
16    31384422    rs72162200    AAAGAAG    A    321.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=41.7155;IndelType=D;MQ=46.84;MQ0=0;QD=53.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268296    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:363,18,0
16    31384554    rs2070896    T    C    1381.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=58.05;MQ0=0;QD=28.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268296    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1415,111,0
16    31388640    rs112819413    G    GA    274.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.567;DB;DP=21;FS=0.0;HRun=13;HaplotypeScore=128.4122;IndelType=I;MQ=55.59;MQ0=0;MQRankSum=-1.071;QD=13.09;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268296    GT:AD:DP:GQ:PL    1/1:7,13:21:2.86:314,3,0
16    31392189    rs11150620    G    C    267.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=33;Dels=0.0;FS=3.599;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.095;QD=8.1;ReadPosRankSum=0.974;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268296    GT:AD:DP:GQ:PL    0/1:22,11:33:99:297,0,673
16    31404467    rs8050328    T    G    83.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=16.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316569    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:116,9,0
16    31404571    rs8050500    T    C    1600.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316569    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1634,126,0
16    31422429    rs12444660    T    C    2134.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=29.24;SNPEFF_AMINO_ACID_CHANGE=S463;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31422397_31422537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389202    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2167,168,0
16    31429267    rs67781883    CA    C    424.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=9;HaplotypeScore=64.1419;IndelType=D;MQ=59.92;MQ0=0;QD=24.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389202    GT:AD:DP:GQ:PL    1/1:0,17:17:51.03:467,51,0
16    31470886    rs151069962    T    A    158.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=12;Dels=0.0;FS=6.818;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=13.2;ReadPosRankSum=-0.6;SNPEFF_AMINO_ACID_CHANGE=F109Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31470789_31471320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408912    GT:AD:DP:GQ:PL    0/1:4,8:12:99:188,0,118
16    31471378    rs9926717    A    G    670    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268314    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:703,51,0
16    31471604    rs4889660    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268314    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
16    31476695    rs111510548    T    C    62.48    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=15.62;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268314    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:92,0,27
16    31489033    rs13143    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFB1I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361773    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    31495873    rs9934336    G    A    580.37    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=2.178;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.351;QD=32.24;ReadPosRankSum=-1.897;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327237    GT:AD:DP:GQ:PL    0/1:2,16:18:6.86:610,0,7
16    31503751    rs4536493    A    G    190.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430477    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:224,18,0
16    31519048    rs11861164    A    G    251.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327237    GT:AD:DP:GQ:PL    1/1:0,7:8:21.07:285,21,0
16    31539386    rs8050390    G    A    827.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHSP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302312    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:861,66,0
16    31613625    rs34368131    GT    G    512.28    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.548;DB;DP=40;FS=2.794;HRun=1;HaplotypeScore=97.0005;IndelType=D;MQ=55.95;MQ0=0;MQRankSum=0.787;QD=12.81;ReadPosRankSum=0.538;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,16:40:99:551,0,1032
16    31716601    rs9938037    A    T    807.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0664L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254109    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:840,63,0
16    31724836    rs2884713    T    C    114.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF720;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316491    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:147,12,0
16    31734197    rs71375941    G    GA    819.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=9;HaplotypeScore=76.3452;IndelType=I;MQ=59.96;MQ0=0;QD=25.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF720;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316491    GT:AD:DP:GQ:PL    1/1:6,26:32:78.21:861,78,0
16    31926619    rs3850114    G    A    3100.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.95;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=C350Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_31925797_31928622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF267;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300870    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3134,232,0
16    31993277    rs192980088    G    T    246.55    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5486;MQ=56.4;MQ0=0;MQRankSum=0.776;QD=12.98;ReadPosRankSum=2.654;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,9:19:99:277,0,288
16    31993418    rs141464783    G    C    101.16    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=35.78;MQ0=0;MQRankSum=1.134;QD=8.43;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,5:12:99:131,0,160
16    32077240    rs62052116    T    C    727.68    MQFilter40    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=201;Dels=0.0;FS=0.83;HRun=0;HaplotypeScore=0.9159;MQ=31.54;MQ0=31;MQRankSum=0.569;QD=3.62;ReadPosRankSum=-0.781;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142381.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354689    GT:AD:DP:GQ:PL    0/1:149,52:201:99:758,0,2625
16    32077537    rs28719639    G    T    2195.96    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=2.542;DB;DP=243;DS;Dels=0.0;FS=1.044;HRun=1;HaplotypeScore=11.5744;MQ=54.39;MQ0=2;MQRankSum=-7.918;QD=9.04;ReadPosRankSum=-1.841;SNPEFF_AMINO_ACID_CHANGE=S51I;SNPEFF_CODON_CHANGE=aGt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_32077386_32077673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142381.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354689    GT:AD:DP:GQ:PL    0/1:144,99:243:99:2226,0,4826
16    32077580    rs28541432    A    G    1973.54    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.675;DB;DP=246;DS;Dels=0.0;FS=1.07;HRun=2;HaplotypeScore=4.4117;MQ=53.45;MQ0=5;MQRankSum=-9.336;QD=8.02;ReadPosRankSum=3.322;SNPEFF_AMINO_ACID_CHANGE=K65;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_32077386_32077673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142381.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354689    GT:AD:DP:GQ:PL    0/1:153,93:246:99:2004,0,5350
16    32077740    rs2215566    A    G    958.79    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=3.598;DB;DP=113;Dels=0.0;FS=3.629;HRun=0;HaplotypeScore=3.8504;MQ=57.03;MQ0=0;MQRankSum=-3.124;QD=8.48;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142381.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354689    GT:AD:DP:GQ:PL    0/1:77,36:113:99:989,0,2629
16    32077803    rs2191766    G    T    337.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.36;MQ0=1;MQRankSum=-3.137;QD=7.5;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142381.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354689    GT:AD:DP:GQ:PL    0/1:30,15:45:99:367,0,1068
16    32077919    rs4026454    A    ATTT    199.01    PASS    AB=0.913;AC=1;AF=0.50;AN=2;BaseQRankSum=4.173;DB;DP=70;FS=9.999;HRun=7;HaplotypeScore=282.9129;IndelType=I;MQ=46.51;MQ0=2;MQRankSum=0.301;QD=2.73;ReadPosRankSum=-0.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142381.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354689    GT:AD:DP:GQ:PL    0/1:66,7:70:99:238,0,2104
16    32077979    rs2191768    G    C    49.53    MQFilter40;QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.24;DB;DP=91;Dels=0.0;FS=7.542;HRun=0;HaplotypeScore=0.0;MQ=36.22;MQ0=19;MQRankSum=-0.851;QD=0.54;ReadPosRankSum=-0.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142381.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354689    GT:AD:DP:GQ:PL    0/1:80,11:91:79.52:80,0,1679
16    32163518    .    C    T    207.38    HaplotypeScoreFilter13;MQFilter40    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.076;DP=79;Dels=0.0;FS=2.442;HRun=0;HaplotypeScore=19.6163;MQ=29.41;MQ0=1;MQRankSum=1.318;QD=2.63;ReadPosRankSum=-0.427;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:61,18:79:99:237,0,1320
16    32163525    rs116644637    G    A    770.16    HaplotypeScoreFilter13;MQFilter40    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.657;DB;DP=78;Dels=0.0;FS=1.966;HRun=0;HaplotypeScore=19.5325;MQ=29.94;MQ0=1;MQRankSum=-0.365;QD=9.87;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,41:78:99:800,0,692
16    32163560    .    C    T    112.69    MQFilter40;QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.02;MQ0=3;MQRankSum=-0.387;QD=1.98;ReadPosRankSum=-0.644;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:46,11:57:99:143,0,997
16    32163833    .    G    T    224.97    MQFilter40    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=2.714;DP=63;Dels=0.0;FS=1.397;HRun=2;HaplotypeScore=0.9159;MQ=27.73;MQ0=0;MQRankSum=-0.345;QD=3.57;ReadPosRankSum=-1.05;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:44,19:63:99:255,0,849
16    32164030    .    T    C    88.65    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.02;MQ0=1;QD=17.73;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:121,12,0
16    32164063    rs144783232    A    G    110.96    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.26;MQ0=1;MQRankSum=1.099;QD=6.93;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,7:16:99:141,0,191
16    32170517    .    G    A    138.91    MQFilter40;QDFilter2    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=2.696;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=13.09;MQ0=41;MQRankSum=-0.156;QD=1.19;ReadPosRankSum=0.364;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:88,29:117:99:169,0,363
16    32178057    .    A    C    185.74    MQFilter40;QDFilter2    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=0.813;DP=203;Dels=0.0;FS=5.228;HRun=1;HaplotypeScore=3.4653;MQ=20.02;MQ0=47;MQRankSum=0.696;QD=0.91;ReadPosRankSum=0.349;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:167,36:203:99:216,0,2586
16    32265022    rs149357881    G    C    996.71    MQFilter40    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.655;DB;DP=221;Dels=0.0;FS=1.741;HRun=1;HaplotypeScore=1.6988;MQ=32.36;MQ0=9;MQRankSum=-0.957;QD=4.51;ReadPosRankSum=-1.492;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=ambiguous_orf;SNPEFF_GENE_NAME=AC133485.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354614    GT:AD:DP:GQ:PL    0/1:158,63:221:99:1027,0,3520
16    32265727    rs62043559    T    C    246.13    PASS    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=96;Dels=0.0;FS=7.834;HRun=1;HaplotypeScore=3.1678;MQ=46.53;MQ0=4;MQRankSum=-6.182;QD=2.56;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=ambiguous_orf;SNPEFF_GENE_NAME=AC133485.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354614    GT:AD:DP:GQ:PL    0/1:73,22:96:99:276,0,2252
16    32329273    .    C    G    635.66    MQFilter40    AB=0.246;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.429;DP=126;Dels=0.0;FS=5.955;HRun=0;HaplotypeScore=0.9159;MQ=16.51;MQ0=77;MQRankSum=-0.291;QD=5.04;ReadPosRankSum=-0.942;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,95:126:99:666,0,192
16    32369619    rs329980    T    C    1710.45    MQFilter40    AB=0.27;AC=1;AF=0.50;AN=2;BaseQRankSum=2.963;DB;DP=138;Dels=0.0;FS=10.298;HRun=1;HaplotypeScore=1.4679;MQ=30.24;MQ0=20;MQRankSum=-7.828;QD=12.39;ReadPosRankSum=0.114;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,100:138:99:1740,0,826
16    32369773    rs329979    G    A    473.63    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.084;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7554;MQ=38.59;MQ0=1;MQRankSum=-1.311;QD=7.4;ReadPosRankSum=-0.772;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:40,24:64:99:504,0,1123
16    32374762    rs4045277    G    C    44.50    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.344;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.1;MQ0=0;MQRankSum=-2.819;QD=1.78;ReadPosRankSum=-0.374;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,5:25:74.49:74,0,694
16    32374780    rs75926343    G    T    72.46    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=48.24;MQ0=0;MQRankSum=-2.725;QD=2.2;ReadPosRankSum=0.375;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:26,6:33:99:102,0,647
16    32374808    rs146382985    C    A    37.38    MQFilter40;QDFilter2    AB=0.908;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=36.59;MQ0=0;MQRankSum=0.679;QD=0.58;ReadPosRankSum=2.522;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:59,6:65:67.38:67,0,1151
16    32399425    rs2432478    A    G    613.42    MQFilter40    AB=0.121;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.87;MQ0=5;MQRankSum=-2.462;QD=18.59;ReadPosRankSum=1.083;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,29:33:85.22:643,0,85
16    32399457    rs2456386    C    T    990.57    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.727;DB;DP=60;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=41.6;MQ0=10;MQRankSum=0.594;QD=16.51;ReadPosRankSum=-1.07;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,37:60:99:1021,0,328
16    32399615    rs2456385    C    T    1657.40    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.334;DB;DP=168;Dels=0.0;FS=5.641;HRun=2;HaplotypeScore=0.8941;MQ=33.46;MQ0=33;MQRankSum=1.321;QD=9.87;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:95,73:168:99:1687,0,1704
16    32399668    rs2432477    T    C    685.57    MQFilter40    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=74;Dels=0.0;FS=4.581;HRun=0;HaplotypeScore=6.7858;MQ=36.52;MQ0=15;MQRankSum=-6.406;QD=9.26;ReadPosRankSum=1.017;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,50:74:99:716,0,665
16    32399726    rs75546615    A    T    57.42    QDFilter2    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=2.227;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.48;MQ0=6;MQRankSum=-4.441;QD=1.2;ReadPosRankSum=-0.798;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,13:48:87.42:87,0,935
16    32399729    rs76895075    T    C    64.08    QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.806;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.06;MQ0=6;MQRankSum=-4.245;QD=1.39;ReadPosRankSum=-0.593;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:34,12:46:94.08:94,0,910
16    32399765    rs62042165    G    A    243.74    HaplotypeScoreFilter13    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.978;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.1511;MQ=44.89;MQ0=1;MQRankSum=-3.367;QD=7.17;ReadPosRankSum=-0.292;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,13:34:99:274,0,698
16    32399770    rs145143261    ATG    A    169.32    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=253.8712;IndelType=D;MQ=44.91;MQ0=1;MQRankSum=1.858;QD=5.64;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,7:28:99:208,0,467
16    32399793    rs78960957    T    C    194.37    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.571;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=42.91;MQ0=0;MQRankSum=-2.811;QD=9.72;ReadPosRankSum=1.975;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,9:20:99:224,0,332
16    32399799    rs75828174    T    C    186.45    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=41.73;MQ0=0;MQRankSum=-2.742;QD=10.97;ReadPosRankSum=1.299;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,9:17:99:216,0,269
16    32402059    rs112245491    ATAAAG    A    2091.10    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=4.538;DB;DP=57;FS=5.005;HRun=0;HaplotypeScore=322.9769;IndelType=D;MQ=33.18;MQ0=4;MQRankSum=-0.093;QD=29.45;ReadPosRankSum=-1.664;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,46:57:99:2130,0,1051
16    32416231    rs2911218    C    T    362.10    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.671;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.47;MQ0=4;MQRankSum=-3.326;QD=8.42;ReadPosRankSum=0.043;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,16:43:99:392,0,754
16    32416372    rs4116239    C    T    482.81    FSFilter60;MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.067;DB;DP=140;Dels=0.0;FS=83.043;HRun=1;HaplotypeScore=1.748;MQ=35.3;MQ0=51;MQRankSum=-7.524;QD=3.45;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:58,81:140:99:513,0,1991
16    32416429    rs4116240    T    C    298.43    FSFilter60;MQFilter40;QDFilter2    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=184;Dels=0.0;FS=64.928;HRun=0;HaplotypeScore=2.4078;MQ=33.41;MQ0=56;MQRankSum=-5.852;QD=1.62;ReadPosRankSum=1.621;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:93,91:184:99:328,0,2591
16    32437070    rs112347455    A    AT    1062.28    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=1.902;DB;DP=93;FS=10.208;HRun=9;HaplotypeScore=446.4426;IndelType=I;MQ=54.32;MQ0=4;MQRankSum=1.548;QD=10.84;ReadPosRankSum=-0.432;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:57,41:93:99:1101,0,914
16    32437093    rs2456358    A    G    2397.98    PASS    AB=0.336;AC=1;AF=0.50;AN=2;BaseQRankSum=3.145;DB;DP=122;Dels=0.0;FS=17.447;HRun=0;HaplotypeScore=1.9866;MQ=53.91;MQ0=6;MQRankSum=2.12;QD=19.66;ReadPosRankSum=-0.443;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:41,81:122:99:2428,0,845
16    32438164    rs4080263    A    G    249.72    MQFilter40;QDFilter2    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.333;DB;DP=188;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=9.89;MQ0=157;MQRankSum=-1.837;QD=1.33;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:110,77:188:99:280,0,241
16    32442104    rs139974249    ATAT    A    796.81    PASS    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=7.037;DB;DP=175;DS;FS=17.494;HRun=0;HaplotypeScore=648.8025;IndelType=D;MQ=35.29;MQ0=21;MQRankSum=-4.011;QD=3.81;ReadPosRankSum=1.803;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:170,39:175:99:836,0,9594
16    32442304    rs1847943    G    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.05;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    32447350    rs62040906    C    T    1002.93    PASS    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=3.247;DB;DP=208;Dels=0.0;FS=3.482;HRun=0;HaplotypeScore=7.47;MQ=56.05;MQ0=1;MQRankSum=-0.305;QD=4.82;ReadPosRankSum=1.767;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:166,42:208:99:1033,0,5105
16    32486499    rs228788    A    G    218.73    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.572;DB;DP=21;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.9159;MQ=52.05;MQ0=0;MQRankSum=-2.245;QD=10.42;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,11:21:99:249,0,305
16    32486548    rs28429248    A    C    710.49    PASS    AB=0.306;AC=1;AF=0.50;AN=2;BaseQRankSum=0.888;DB;DP=36;Dels=0.0;FS=1.926;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.094;QD=19.74;ReadPosRankSum=1.342;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,25:36:99:740,0,227
16    32486756    rs28495417    A    G    552.88    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=28;Dels=0.0;FS=3.909;HRun=2;HaplotypeScore=0.0;MQ=49.01;MQ0=2;MQRankSum=-2.601;QD=19.75;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,21:28:99:583,0,208
16    32487025    rs74772219    C    T    31.63    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.13;DB;DP=28;Dels=0.0;FS=7.52;HRun=0;HaplotypeScore=0.0;MQ=53.04;MQ0=0;MQRankSum=-3.79;QD=1.13;ReadPosRankSum=0.526;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,7:28:61.62:62,0,590
16    32490111    .    C    T    47.95    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.908;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DP=67;Dels=0.0;FS=2.525;HRun=0;HaplotypeScore=28.2029;MQ=36.98;MQ0=9;MQRankSum=-0.388;QD=0.72;ReadPosRankSum=2.954;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:59,6:67:77.94:78,0,890
16    32490125    .    G    A    41.30    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.2483;MQ=38.67;MQ0=14;MQRankSum=-6.17;QD=0.5;ReadPosRankSum=-0.518;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:44,39:83:71.29:71,0,1157
16    32490184    rs4094840    G    A    578.71    MQFilter40    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=1.782;DB;DP=137;Dels=0.0;FS=7.686;HRun=1;HaplotypeScore=12.3419;MQ=31.43;MQ0=30;MQRankSum=-0.094;QD=4.22;ReadPosRankSum=-0.238;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:85,52:137:99:609,0,973
16    32490387    rs62043367    G    C    30.60    MQFilter40;QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.611;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=29.21;MQ0=4;MQRankSum=1.396;QD=1.91;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,2:16:60.59:61,0,126
16    32891522    rs138173595    G    C    50.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.0;MQ0=0;QD=16.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC138915.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330048    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:83,9,0
16    32893792    rs149656617    A    G    341.50    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.26;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7719;MQ=14.33;MQ0=42;MQRankSum=-3.086;QD=3.48;ReadPosRankSum=0.408;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142086.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398669    GT:AD:DP:GQ:PL    0/1:28,70:98:99:371,0,152
16    32893876    .    T    C    1106.05    MQFilter40    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.823;DP=202;Dels=0.0;FS=21.297;HRun=1;HaplotypeScore=5.8433;MQ=24.24;MQ0=38;MQRankSum=-2.323;QD=5.48;ReadPosRankSum=-2.065;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142086.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398669    GT:AD:DP:GQ:PL    0/1:111,90:202:99:1136,0,1910
16    32896606    rs139370574    G    A    101.40    MQFilter40    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.35;MQ0=0;MQRankSum=-1.346;QD=3.27;ReadPosRankSum=-0.024;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142086.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398669    GT:AD:DP:GQ:PL    0/1:24,7:31:99:131,0,521
16    32896607    rs143958955    C    T    101.40    MQFilter40    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.339;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.35;MQ0=0;MQRankSum=-1.158;QD=3.27;ReadPosRankSum=-0.165;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC142086.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398669    GT:AD:DP:GQ:PL    0/1:24,7:31:99:131,0,522
16    32928498    rs28482103    C    G    123.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8255;MQ=22.24;MQ0=5;QD=10.29;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,12:12:12.03:156,12,0
16    32957041    rs62046846    C    T    46.24    MQFilter40;QDFilter2    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.069;DB;DP=32;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=0.0;MQ=28.61;MQ0=2;MQRankSum=-0.995;QD=1.44;ReadPosRankSum=-0.021;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,12:32:76.23:76,0,400
16    32957043    rs62046847    T    C    49.22    MQFilter40;QDFilter2    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.819;DB;DP=31;Dels=0.0;FS=5.907;HRun=0;HaplotypeScore=0.0;MQ=28.17;MQ0=2;MQRankSum=-0.775;QD=1.59;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:19,12:31:79.22:79,0,436
16    33013901    rs147888019    G    T    222.33    MQFilter40    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.549;DB;DP=95;Dels=0.0;FS=2.996;HRun=1;HaplotypeScore=0.9894;MQ=35.92;MQ0=9;MQRankSum=-0.489;QD=2.34;ReadPosRankSum=0.99;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:79,16:95:99:252,0,2005
16    33326625    rs75702648    T    C    297.88    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=25.27;MQ0=16;MQRankSum=1.644;QD=5.23;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:38,19:57:99:328,0,482
16    33366647    rs55897768    C    T    329.26    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.572;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=52.02;MQ0=0;MQRankSum=0.863;QD=11.35;ReadPosRankSum=0.332;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:17,12:29:99:359,0,607
16    33366648    rs59819998    AG    A    375.58    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=4.495;DB;DP=30;FS=0.0;HRun=2;HaplotypeScore=118.8006;IndelType=D;MQ=52.47;MQ0=0;MQRankSum=-0.197;QD=12.52;ReadPosRankSum=-0.329;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:17,13:30:99:415,0,625
16    33372666    rs4985326    C    T    1278.63    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=1.281;DB;DP=250;DS;Dels=0.0;FS=1.277;HRun=0;HaplotypeScore=2.8325;MQ=51.9;MQ0=2;MQRankSum=-9.27;QD=5.11;ReadPosRankSum=-1.857;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:168,82:250:99:1309,0,5386
16    33372673    rs4985325    T    C    1279.98    PASS    AB=0.668;AC=1;AF=0.50;AN=2;BaseQRankSum=4.038;DB;DP=250;DS;Dels=0.0;FS=2.775;HRun=0;HaplotypeScore=2.5442;MQ=51.85;MQ0=2;MQRankSum=-9.582;QD=5.12;ReadPosRankSum=-1.523;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:167,83:250:99:1310,0,5341
16    33372677    rs4985324    C    T    1217.10    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.464;DB;DP=249;DS;Dels=0.0;FS=7.204;HRun=2;HaplotypeScore=3.1003;MQ=52.15;MQ0=2;MQRankSum=-9.747;QD=4.89;ReadPosRankSum=-0.037;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:172,77:249:99:1247,0,5480
16    33372694    rs4985323    T    C    1384.73    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=250;DS;Dels=0.0;FS=6.453;HRun=0;HaplotypeScore=1.6281;MQ=51.4;MQ0=2;MQRankSum=-10.097;QD=5.54;ReadPosRankSum=0.275;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:167,82:250:99:1415,0,5483
16    33379851    rs4566180    G    A    69.47    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=3.0;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.91;MQ0=0;MQRankSum=1.836;QD=3.16;ReadPosRankSum=2.194;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:18,4:22:99:99,0,500
16    33380000    rs4536488    G    A    1193.36    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=2.241;DB;DP=153;Dels=0.0;FS=0.687;HRun=2;HaplotypeScore=4.3437;MQ=56.33;MQ0=0;MQRankSum=-2.747;QD=7.8;ReadPosRankSum=-0.025;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:105,48:153:99:1223,0,3231
16    33380074    rs28591591    A    G    1073.53    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.9;DB;DP=177;Dels=0.0;FS=2.121;HRun=1;HaplotypeScore=4.404;MQ=52.86;MQ0=1;MQRankSum=-6.458;QD=6.07;ReadPosRankSum=-1.83;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:126,51:177:99:1104,0,4018
16    33380234    rs57545706    C    T    529.85    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=46;Dels=0.0;FS=2.559;HRun=0;HaplotypeScore=0.0;MQ=57.92;MQ0=0;MQRankSum=-2.259;QD=11.52;ReadPosRankSum=0.892;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:28,18:46:99:560,0,919
16    33380263    rs57312786    C    G    492.78    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.966;DB;DP=37;Dels=0.0;FS=3.378;HRun=1;HaplotypeScore=0.9832;MQ=57.92;MQ0=0;MQRankSum=-2.118;QD=13.32;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,17:37:99:523,0,694
16    33401859    rs11490449    G    A    70.36    MQFilter40    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.22;MQ0=3;MQRankSum=-2.197;QD=2.43;ReadPosRankSum=-0.058;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,9:29:99:100,0,600
16    33401967    rs8047578    G    A    379.55    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=1.226;DB;DP=83;Dels=0.0;FS=3.484;HRun=1;HaplotypeScore=1.9466;MQ=53.72;MQ0=0;MQRankSum=-1.161;QD=4.57;ReadPosRankSum=-2.057;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:63,20:83:99:410,0,1701
16    33401997    rs8048197    T    C    369.86    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.029;DB;DP=71;Dels=0.0;FS=3.871;HRun=1;HaplotypeScore=0.9996;MQ=54.59;MQ0=0;MQRankSum=-0.262;QD=5.21;ReadPosRankSum=0.826;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:51,20:71:99:400,0,1608
16    33402061    rs8047387    G    A    291.22    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.515;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.17;MQ0=0;MQRankSum=0.418;QD=7.66;ReadPosRankSum=-0.032;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,11:38:99:321,0,839
16    33402125    rs4887703    C    T    159.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.044;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=56.82;MQ0=0;MQRankSum=-0.047;QD=8.84;ReadPosRankSum=-0.14;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,6:18:99:189,0,303
16    33402192    rs4887704    G    T    110.67    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.3;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,145
16    33413927    rs59120870    G    A    53.79    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=52.28;MQ0=0;MQRankSum=-1.683;QD=5.38;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,3:10:83.79:84,0,173
16    33413939    rs55963762    T    G    34    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=53.64;MQ0=0;MQRankSum=-1.849;QD=2.83;ReadPosRankSum=0.185;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,3:12:63.99:64,0,328
16    33413957    rs28392505    C    T    160.08    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.61;MQ0=0;MQRankSum=-2.684;QD=8.43;ReadPosRankSum=-1.197;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,8:19:99:190,0,357
16    33414106    rs56355026    T    C    417.16    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.93;DB;DP=59;Dels=0.0;FS=9.294;HRun=0;HaplotypeScore=0.0;MQ=47.56;MQ0=3;MQRankSum=-5.495;QD=7.07;ReadPosRankSum=-0.189;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,29:59:99:447,0,960
16    33414143    rs55927096    C    T    410.53    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.778;DB;DP=38;Dels=0.0;FS=9.298;HRun=0;HaplotypeScore=0.9578;MQ=51.24;MQ0=3;MQRankSum=-2.156;QD=10.8;ReadPosRankSum=1.397;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:18,19:38:99:441,0,496
16    33414188    rs7196786    A    G    425.84    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=-2.048;QD=15.77;ReadPosRankSum=-0.518;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,16:27:99:456,0,378
16    33414214    rs12445102    C    G    254.61    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=20;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=54.32;MQ0=0;MQRankSum=-0.988;QD=12.73;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,11:20:99:285,0,313
16    33414234    rs12448077    C    T    229.51    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=18;Dels=0.0;FS=2.796;HRun=0;HaplotypeScore=0.0;MQ=51.35;MQ0=0;MQRankSum=-1.903;QD=12.75;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,11:18:99:260,0,193
16    33414269    rs9926582    T    G    83.13    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.003;DB;DP=13;Dels=0.0;FS=4.771;HRun=3;HaplotypeScore=0.0;MQ=46.75;MQ0=0;MQRankSum=-1.003;QD=6.39;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,9:13:99:113,0,138
16    33414277    rs12448049    C    T    94.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=45.66;MQ0=0;MQRankSum=-1.133;QD=9.43;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,6:10:99:124,0,135
16    33424691    rs2632824    T    C    448.34    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=2.044;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.18;MQ0=0;MQRankSum=0.136;QD=13.59;ReadPosRankSum=0.642;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,20:33:99:478,0,399
16    33424787    rs2632823    C    T    1482.34    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.914;DB;DP=93;Dels=0.0;FS=1.777;HRun=0;HaplotypeScore=0.9979;MQ=57.43;MQ0=0;MQRankSum=-0.948;QD=15.94;ReadPosRankSum=-0.798;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:39,54:93:99:1512,0,1286
16    33424917    rs1906318    A    C    1569.64    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=126;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=52.95;MQ0=4;MQRankSum=-5.748;QD=12.46;ReadPosRankSum=0.934;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:62,64:126:99:1600,0,1870
16    33424950    rs2927971    C    T    1472.26    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=3.239;DB;DP=107;Dels=0.0;FS=1.698;HRun=1;HaplotypeScore=1.8665;MQ=45.66;MQ0=8;MQRankSum=-4.618;QD=13.76;ReadPosRankSum=-1.254;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:46,61:107:99:1502,0,1375
16    33425005    rs79490911    T    C    535.06    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.063;DB;DP=86;Dels=0.0;FS=5.592;HRun=1;HaplotypeScore=0.9916;MQ=44.34;MQ0=7;MQRankSum=2.816;QD=6.22;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:62,24:86:99:565,0,1695
16    33490727    rs145526138    T    C    68.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=54.38;MQ0=0;MQRankSum=-0.421;QD=8.52;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,4:8:98.16:98,0,144
16    33497306    rs62029822    T    C    73.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.24;MQ0=0;MQRankSum=-2.219;QD=8.21;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,5:9:99:104,0,136
16    33497322    rs62029823    G    A    67.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.97;MQ0=1;MQRankSum=-2.219;QD=6.78;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,5:10:97.83:98,0,115
16    33497373    rs62029824    G    C    48.37    MQFilter40    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.905;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=35.91;MQ0=1;MQRankSum=-2.117;QD=2.85;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,7:17:78.36:78,0,257
16    33497468    rs149742156    G    A    157.22    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=2.275;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7382;MQ=40.95;MQ0=1;MQRankSum=0.821;QD=5.07;ReadPosRankSum=-0.07;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,8:31:99:187,0,369
16    33498922    rs3878379    C    T    79.19    MQFilter40;QDFilter2    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=39.59;MQ0=5;MQRankSum=-4.093;QD=1.58;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,13:50:99:109,0,1254
16    33498945    rs62039468    C    T    132.71    MQFilter40;QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.992;DB;DP=75;Dels=0.0;FS=3.669;HRun=0;HaplotypeScore=0.0;MQ=38.75;MQ0=6;MQRankSum=-3.582;QD=1.77;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:58,17:75:99:163,0,1573
16    33498965    rs3878381    T    A    198.25    MQFilter40    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.59;DB;DP=89;Dels=0.0;FS=7.052;HRun=0;HaplotypeScore=0.6651;MQ=37.1;MQ0=4;MQRankSum=-2.755;QD=2.23;ReadPosRankSum=-0.594;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:70,18:89:99:228,0,1642
16    33499035    rs28590552    A    G    454.41    MQFilter40    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=1.217;DB;DP=176;Dels=0.0;FS=22.947;HRun=1;HaplotypeScore=1.5757;MQ=25.2;MQ0=38;MQRankSum=0.264;QD=2.58;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:140,36:176:99:484,0,2347
16    33499100    rs28565257    C    G    636.02    MQFilter40    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=174;Dels=0.0;FS=1.627;HRun=0;HaplotypeScore=4.5081;MQ=33.69;MQ0=24;MQRankSum=1.831;QD=3.66;ReadPosRankSum=1.151;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:134,39:174:99:666,0,2423
16    33499956    rs4079597    C    T    65.65    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.36;MQ0=0;MQRankSum=-0.727;QD=16.41;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:96,0,29
16    33499967    rs3870451    G    A    62.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.46;MQ0=0;MQRankSum=-1.231;QD=12.53;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:67.20:93,0,67
16    33500148    rs3870452    T    C    206.24    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=71;Dels=0.0;FS=10.089;HRun=0;HaplotypeScore=0.0;MQ=41.07;MQ0=4;MQRankSum=-5.711;QD=2.9;ReadPosRankSum=-0.764;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:46,25:71:99:236,0,1452
16    33500412    rs56050635    A    G    106.22    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=2.363;DB;DP=52;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.734;MQ=49.66;MQ0=0;MQRankSum=-5.534;QD=2.04;ReadPosRankSum=1.091;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,15:52:99:136,0,1336
16    33500439    rs56083581    C    A    274.81    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=3.037;DB;DP=78;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.4725;MQ=51.18;MQ0=0;MQRankSum=-5.213;QD=3.52;ReadPosRankSum=1.094;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:56,22:78:99:305,0,1942
16    33500509    rs28500776    C    T    670.52    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=157;Dels=0.0;FS=1.537;HRun=0;HaplotypeScore=3.3932;MQ=51.67;MQ0=0;MQRankSum=-5.604;QD=4.27;ReadPosRankSum=-0.055;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:117,40:157:99:701,0,3603
16    33500537    rs12923870    C    T    737.57    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=0.132;DB;DP=182;Dels=0.0;FS=1.43;HRun=1;HaplotypeScore=0.8321;MQ=50.98;MQ0=0;MQRankSum=-6.465;QD=4.05;ReadPosRankSum=-0.753;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:136,46:182:99:768,0,4189
16    33500591    rs28534544    G    C    697.42    PASS    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=0.944;DB;DP=165;Dels=0.0;FS=0.808;HRun=0;HaplotypeScore=0.5784;MQ=46.0;MQ0=1;MQRankSum=-4.56;QD=4.23;ReadPosRankSum=2.155;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:126,39:165:99:727,0,3795
16    33500685    rs28500606    T    C    156.80    QDFilter2    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=105;Dels=0.0;FS=3.035;HRun=0;HaplotypeScore=0.0;MQ=40.37;MQ0=3;MQRankSum=-5.62;QD=1.49;ReadPosRankSum=2.544;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:83,22:105:99:187,0,2477
16    33500743    rs3888934    T    C    271.36    PASS    AB=0.779;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=86;Dels=0.0;FS=4.287;HRun=0;HaplotypeScore=1.5317;MQ=49.59;MQ0=0;MQRankSum=-5.86;QD=3.16;ReadPosRankSum=1.524;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:67,19:86:99:301,0,2299
16    33500893    rs4079166    C    T    522.03    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=101;Dels=0.0;FS=10.745;HRun=0;HaplotypeScore=2.133;MQ=50.22;MQ0=1;MQRankSum=-5.0;QD=5.17;ReadPosRankSum=2.607;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:72,29:101:99:552,0,2322
16    33500900    rs4079165    C    T    546.03    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.579;DB;DP=102;Dels=0.0;FS=14.833;HRun=0;HaplotypeScore=0.7887;MQ=50.3;MQ0=0;MQRankSum=-5.578;QD=5.35;ReadPosRankSum=1.572;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:71,31:102:99:576,0,2209
16    33500908    rs3888935    C    A    562.69    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.697;DB;DP=102;Dels=0.0;FS=20.84;HRun=0;HaplotypeScore=3.5363;MQ=50.41;MQ0=0;MQRankSum=-4.352;QD=5.52;ReadPosRankSum=0.991;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:71,31:102:99:593,0,2222
16    33500915    rs4079164    T    A    565.59    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.288;DB;DP=103;Dels=0.0;FS=18.614;HRun=1;HaplotypeScore=3.5363;MQ=50.37;MQ0=0;MQRankSum=-4.522;QD=5.49;ReadPosRankSum=-0.677;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:69,33:103:99:596,0,2154
16    33500973    rs112379714;rs112962565    CAG    C    637.97    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.905;DB;DP=51;FS=1.719;HRun=0;HaplotypeScore=204.4369;IndelType=D;MQ=51.14;MQ0=0;MQRankSum=-2.028;QD=11.81;ReadPosRankSum=3.547;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,17:51:99:677,0,1767
16    33503507    rs4887663    G    A    30.63    MQFilter40    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.11;MQ0=4;MQRankSum=1.38;QD=3.06;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,2:10:60.62:61,0,98
16    33503571    rs62039495    C    T    382.11    MQFilter40    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.468;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.5345;MQ=23.24;MQ0=4;MQRankSum=-2.37;QD=6.82;ReadPosRankSum=-2.443;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,29:56:99:412,0,612
16    33503580    rs4887664    G    A    81.94    MQFilter40;QDFilter2    AB=0.892;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.4865;MQ=22.05;MQ0=11;MQRankSum=3.451;QD=1.24;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:58,7:66:99:112,0,943
16    33503642    rs62039496    A    C    354.49    MQFilter40;QDFilter2    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.262;DB;DP=205;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9785;MQ=25.08;MQ0=48;MQRankSum=-7.134;QD=1.73;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:127,78:205:99:384,0,2984
16    33503668    rs4887665    T    C    915.86    MQFilter40    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=2.099;DB;DP=250;DS;Dels=0.0;FS=1.307;HRun=0;HaplotypeScore=0.0;MQ=25.75;MQ0=64;MQRankSum=4.305;QD=3.66;ReadPosRankSum=0.13;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:205,45:250:99:946,0,2846
16    33504558    rs4890083    G    A    55.01    MQFilter40;QDFilter2    AB=0.894;AC=1;AF=0.50;AN=2;BaseQRankSum=0.375;DB;DP=47;Dels=0.0;FS=10.62;HRun=0;HaplotypeScore=4.1607;MQ=24.92;MQ0=20;MQRankSum=1.536;QD=1.17;ReadPosRankSum=-0.512;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:42,5:47:85:85,0,460
16    33530740    .    TA    T    92.88    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=1.9;DP=34;FS=0.0;HRun=13;HaplotypeScore=149.2765;IndelType=D;MQ=57.0;MQ0=0;MQRankSum=0.814;QD=2.65;ReadPosRankSum=-0.123;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,12:34:99:132,0,350
16    33534128    rs4247491    G    C    632.87    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=2.727;DB;DP=88;Dels=0.0;FS=21.825;HRun=0;HaplotypeScore=0.0;MQ=44.04;MQ0=10;MQRankSum=-6.654;QD=7.19;ReadPosRankSum=-1.73;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:38,50:88:99:663,0,1345
16    33534161    rs4247492    T    C    632.59    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.088;DB;DP=113;Dels=0.0;FS=38.524;HRun=0;HaplotypeScore=0.9973;MQ=45.85;MQ0=13;MQRankSum=-8.445;QD=5.6;ReadPosRankSum=3.021;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:59,54:113:99:663,0,1976
16    33534194    rs112954068    C    CA    817.38    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=7.903;DB;DP=103;FS=15.732;HRun=3;HaplotypeScore=745.5304;IndelType=I;MQ=47.29;MQ0=7;MQRankSum=-7.745;QD=6.44;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:77,50:103:99:856,0,2153
16    33534205    rs75274563    T    C    357.01    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=135;Dels=0.0;FS=24.703;HRun=1;HaplotypeScore=3.8502;MQ=48.1;MQ0=6;MQRankSum=-9.339;QD=2.64;ReadPosRankSum=-3.969;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:81,54:135:99:387,0,2489
16    33534254    rs79370116    C    A    297.40    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=141;Dels=0.0;FS=2.363;HRun=5;HaplotypeScore=2.4916;MQ=50.31;MQ0=3;MQRankSum=-5.821;QD=2.11;ReadPosRankSum=3.668;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:112,29:141:99:327,0,3136
16    33534278    rs10445205    A    G    1693.34    PASS    AB=0.369;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.066;DB;DP=111;Dels=0.0;FS=2.467;HRun=0;HaplotypeScore=4.2384;MQ=49.46;MQ0=1;MQRankSum=-3.492;QD=15.26;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:41,70:111:99:1723,0,1225
16    33534325    .    CT    C    88.75    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=3.971;DP=42;FS=0.0;HRun=4;HaplotypeScore=314.3272;IndelType=D;MQ=54.17;MQ0=0;MQRankSum=-3.495;QD=1.97;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,9:42:99:128,0,1194
16    33534330    rs28594967    G    A    277.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.5845;MQ=54.03;MQ0=0;MQRankSum=-1.655;QD=6.3;ReadPosRankSum=-0.763;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,22:44:99:307,0,784
16    33539414    rs139523030    T    TA    128.88    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;FS=0.0;HRun=9;HaplotypeScore=104.0386;IndelType=I;MQ=42.13;MQ0=1;MQRankSum=-2.313;QD=8.59;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,7:13:93.84:168,0,94
16    33539475    rs3902216    G    T    320.53    MQFilter40    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=0.665;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=32.67;MQ0=11;MQRankSum=-2.836;QD=9.43;ReadPosRankSum=-0.735;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,28:34:99:351,0,191
16    33539512    rs78972024    C    T    660.36    MQFilter40    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.149;DB;DP=62;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.9958;MQ=31.57;MQ0=12;MQRankSum=-4.467;QD=10.65;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:18,44:62:99:690,0,434
16    33539541    rs80334711    A    C    1142.26    MQFilter40    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.187;DB;DP=102;Dels=0.0;FS=7.078;HRun=0;HaplotypeScore=3.9268;MQ=31.47;MQ0=7;MQRankSum=-5.224;QD=11.2;ReadPosRankSum=-0.639;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,78:102:99:1172,0,580
16    33539560    rs78715113    A    C    148.15    MQFilter40;QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=118;Dels=0.0;FS=1.341;HRun=0;HaplotypeScore=0.0;MQ=32.8;MQ0=12;MQRankSum=-1.229;QD=1.26;ReadPosRankSum=-0.123;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:100,18:118:99:178,0,2066
16    33539588    rs79792636    T    G    1169.10    MQFilter40    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.808;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8037;MQ=31.61;MQ0=28;MQRankSum=-7.277;QD=7.9;ReadPosRankSum=-0.65;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:45,103:148:99:1199,0,1155
16    33539634    rs76750868    C    T    568.02    HaplotypeScoreFilter13;MQFilter40    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.076;DB;DP=131;Dels=0.0;FS=11.066;HRun=0;HaplotypeScore=24.3134;MQ=33.46;MQ0=35;MQRankSum=-7.204;QD=4.34;ReadPosRankSum=1.912;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:53,78:131:99:598,0,1201
16    33539635    .    A    G    103.97    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DP=129;Dels=0.0;FS=1.299;HRun=0;HaplotypeScore=24.3134;MQ=33.23;MQ0=35;MQRankSum=-4.755;QD=0.81;ReadPosRankSum=1.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:97,32:129:99:134,0,1680
16    33539648    rs56161129    C    A    520.29    MQFilter40    AB=0.292;AC=1;AF=0.50;AN=2;BaseQRankSum=4.05;DB;DP=106;Dels=0.0;FS=9.545;HRun=0;HaplotypeScore=1.6229;MQ=33.91;MQ0=29;MQRankSum=-7.284;QD=4.91;ReadPosRankSum=1.703;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,75:106:99:550,0,799
16    33539699    rs75616192    A    C    43.05    MQFilter40;QDFilter2    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.5627;MQ=34.7;MQ0=8;MQRankSum=-4.848;QD=0.86;ReadPosRankSum=0.542;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,27:50:73.04:73,0,653
16    33547882    rs78110565    A    G    1341.05    PASS    AB=0.276;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.73;MQ0=2;MQRankSum=-4.066;QD=15.41;ReadPosRankSum=0.044;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,63:87:99:1371,0,765
16    33547905    rs4123885    T    A    2594.40    PASS    AB=0.246;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6522;MQ=46.81;MQ0=3;MQRankSum=-5.095;QD=18.8;ReadPosRankSum=0.36;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:34,104:138:99:2624,0,1043
16    33547962    rs74596538    T    C    4987.32    PASS    AB=0.24;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DB;DP=250;DS;Dels=0.0;FS=2.489;HRun=2;HaplotypeScore=2.2392;MQ=44.9;MQ0=5;MQRankSum=-8.842;QD=19.95;ReadPosRankSum=2.487;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:60,190:250:99:4987,0,1807
16    33547966    rs78448652    G    A    5070.72    HaplotypeScoreFilter13    AB=0.228;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.926;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=17.6382;MQ=44.65;MQ0=5;MQRankSum=-8.555;QD=20.28;ReadPosRankSum=1.13;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:57,193:250:99:5071,0,1678
16    33548013    rs80024711    T    G    3029.61    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=0.21;DB;DP=243;DS;Dels=0.0;FS=1.748;HRun=0;HaplotypeScore=4.1523;MQ=46.41;MQ0=8;MQRankSum=-10.306;QD=12.47;ReadPosRankSum=2.148;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:88,155:243:99:3060,0,2843
16    33548025    rs74768650    A    C    3020.97    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.781;DB;DP=236;DS;Dels=0.0;FS=9.038;HRun=1;HaplotypeScore=1.6006;MQ=47.05;MQ0=7;MQRankSum=-10.364;QD=12.8;ReadPosRankSum=3.703;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:100,136:236:99:3051,0,3246
16    33548046    rs28449878    T    C    3842.81    PASS    AB=0.284;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.444;DB;DP=250;DS;Dels=0.0;FS=11.399;HRun=0;HaplotypeScore=2.7003;MQ=45.09;MQ0=18;MQRankSum=-8.788;QD=15.37;ReadPosRankSum=-0.089;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:71,179:250:99:3843,0,2288
16    33548084    rs77515676    A    G    2380.95    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=6.678;DB;DP=237;DS;Dels=0.0;FS=56.697;HRun=2;HaplotypeScore=1.8332;MQ=44.75;MQ0=16;MQRankSum=-11.818;QD=10.05;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:102,135:237:99:2411,0,3340
16    33548091    rs79448546    G    A    1612.72    FSFilter60    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.472;DB;DP=219;DS;Dels=0.0;FS=84.733;HRun=1;HaplotypeScore=2.8265;MQ=45.07;MQ0=14;MQRankSum=-12.168;QD=7.36;ReadPosRankSum=1.983;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:105,114:219:99:1643,0,3657
16    33548115    rs79602761    G    A    975.50    FSFilter60    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=2.692;DB;DP=220;DS;Dels=0.0;FS=80.742;HRun=0;HaplotypeScore=4.094;MQ=45.5;MQ0=11;MQRankSum=-12.277;QD=4.43;ReadPosRankSum=2.064;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:113,105:220:99:1005,0,3953
16    33548181    rs76401252    G    C    538.27    FSFilter60    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.486;DB;DP=236;DS;Dels=0.0;FS=90.613;HRun=0;HaplotypeScore=0.7887;MQ=47.43;MQ0=23;MQRankSum=-11.67;QD=2.28;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:143,93:236:99:568,0,4795
16    33548195    .    C    G    572.23    FSFilter60    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.883;DP=223;DS;Dels=0.0;FS=71.708;HRun=0;HaplotypeScore=5.6145;MQ=47.51;MQ0=30;MQRankSum=-10.791;QD=2.57;ReadPosRankSum=-0.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:137,86:223:99:602,0,4328
16    33548261    rs75249900    C    A    520.86    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=181;DS;Dels=0.0;FS=11.743;HRun=1;HaplotypeScore=0.5784;MQ=45.33;MQ0=23;MQRankSum=-7.494;QD=2.88;ReadPosRankSum=3.785;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:130,51:181:99:551,0,3729
16    33586012    rs241924    A    C    77.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.82;MQ0=0;MQRankSum=0.551;QD=5.17;ReadPosRankSum=0.674;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,5:15:99:107,0,291
16    33586187    rs241925    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=50.49;MQ0=0;QD=10.47;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:73,6,0
16    33629521    rs2005871    A    G    153.81    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.566;DB;DP=20;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.743;QD=7.69;ReadPosRankSum=-2.06;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,7:20:99:184,0,431
16    33629620    rs2005870    C    T    955.78    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.918;DB;DP=110;Dels=0.0;FS=27.364;HRun=0;HaplotypeScore=0.9665;MQ=59.41;MQ0=0;MQRankSum=1.012;QD=8.69;ReadPosRankSum=-0.464;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:67,42:110:99:986,0,2402
16    33629637    rs2005869    T    G    1249.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.128;DB;DP=128;Dels=0.0;FS=20.055;HRun=1;HaplotypeScore=0.6651;MQ=59.49;MQ0=0;MQRankSum=-0.173;QD=9.76;ReadPosRankSum=-0.671;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:80,48:128:99:1279,0,2597
16    33629700    rs2019670    G    A    1299.16    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.941;DB;DP=183;Dels=0.0;FS=0.616;HRun=0;HaplotypeScore=1.4972;MQ=59.57;MQ0=0;MQRankSum=1.35;QD=7.1;ReadPosRankSum=-1.756;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:129,54:183:99:1329,0,3936
16    33629846    rs28494899    T    A    1556.04    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=5.199;DB;DP=197;Dels=0.0;FS=7.94;HRun=0;HaplotypeScore=2.8131;MQ=56.71;MQ0=0;MQRankSum=1.968;QD=7.9;ReadPosRankSum=-1.069;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:137,60:197:99:1586,0,4167
16    33629950    rs4077614    G    T    1260.15    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.048;DB;DP=194;Dels=0.0;FS=2.891;HRun=0;HaplotypeScore=2.3001;MQ=49.85;MQ0=0;MQRankSum=0.452;QD=6.5;ReadPosRankSum=0.075;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:143,51:194:99:1290,0,4681
16    33629973    rs2002923    G    A    1258.20    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=199;Dels=0.0;FS=2.053;HRun=0;HaplotypeScore=4.7423;MQ=48.9;MQ0=1;MQRankSum=2.179;QD=6.32;ReadPosRankSum=0.863;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:145,54:199:99:1288,0,4411
16    33630022    rs2075113    A    T    1886.98    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=5.414;DB;DP=225;Dels=0.0;FS=8.549;HRun=1;HaplotypeScore=7.7355;MQ=57.23;MQ0=1;MQRankSum=3.141;QD=8.39;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:156,68:225:99:1917,0,5104
16    33630336    rs492688    A    G    375.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.77;MQ0=1;MQRankSum=0.869;QD=28.9;ReadPosRankSum=1.448;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,12:13:7.46:407,7,0
16    33710145    rs1318539    T    A    86.82    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.9;MQ0=0;MQRankSum=0.58;QD=5.11;ReadPosRankSum=-1.212;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,5:17:99:117,0,363
16    33710177    rs1811313    C    T    38.31    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=15;Dels=0.0;FS=2.963;HRun=2;HaplotypeScore=0.0;MQ=46.02;MQ0=0;MQRankSum=1.083;QD=2.55;ReadPosRankSum=0.072;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,3:15:68.30:68,0,322
16    33730779    .    C    A    102.68    MQFilter40    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.717;DP=25;Dels=0.0;FS=19.445;HRun=0;HaplotypeScore=0.0;MQ=30.0;MQ0=7;MQRankSum=-1.268;QD=4.11;ReadPosRankSum=1.902;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,11:25:99:133,0,316
16    33730784    .    T    C    109.53    MQFilter40    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DP=26;Dels=0.0;FS=10.296;HRun=1;HaplotypeScore=0.0;MQ=29.59;MQ0=7;MQRankSum=-0.983;QD=4.21;ReadPosRankSum=2.107;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,11:26:99:140,0,323
16    33736737    rs2519367    C    T    154.83    MQFilter40    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.78;MQ0=20;MQRankSum=2.106;QD=3.97;ReadPosRankSum=-0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC140658.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450856    GT:AD:DP:GQ:PL    0/1:28,11:39:99:185,0,196
16    33736755    rs2519366    G    A    151.35    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.94;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=18.25;MQ0=14;MQRankSum=0.124;QD=4.59;ReadPosRankSum=-0.619;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC140658.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450856    GT:AD:DP:GQ:PL    0/1:22,11:33:99:181,0,223
16    33738885    rs58856893    G    A    135.87    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.88;MQ0=1;MQRankSum=-0.433;QD=7.15;ReadPosRankSum=-1.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC140658.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450856    GT:AD:DP:GQ:PL    0/1:8,11:19:99:166,0,236
16    33740747    rs2549429    C    T    415.64    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.538;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=50.79;MQ0=1;MQRankSum=-5.904;QD=4.83;ReadPosRankSum=1.703;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC140658.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450856    GT:AD:DP:GQ:PL    0/1:63,23:86:99:446,0,1855
16    33740770    rs2549428    C    G    587.43    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.566;DB;DP=98;Dels=0.0;FS=3.893;HRun=0;HaplotypeScore=1.5572;MQ=52.71;MQ0=0;MQRankSum=-5.344;QD=5.99;ReadPosRankSum=-1.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC140658.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450856    GT:AD:DP:GQ:PL    0/1:67,31:98:99:617,0,2010
16    33741216    rs2519346    G    A    460.09    PASS    AB=0.747;AC=1;AF=0.50;AN=2;BaseQRankSum=3.664;DB;DP=83;Dels=0.0;FS=7.213;HRun=2;HaplotypeScore=0.0;MQ=52.87;MQ0=1;MQRankSum=-1.977;QD=5.54;ReadPosRankSum=2.284;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC140658.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450856    GT:AD:DP:GQ:PL    0/1:62,21:83:99:490,0,2068
16    33782742    rs139040346    T    C    212.69    MQFilter40    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=19;Dels=0.0;FS=1.984;HRun=1;HaplotypeScore=0.0;MQ=29.38;MQ0=0;MQRankSum=-1.197;QD=11.19;ReadPosRankSum=-1.362;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC133561.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380145    GT:AD:DP:GQ:PL    0/1:8,11:19:99:243,0,160
16    33783187    .    A    G    48    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.14;MQ0=52;QD=0.87;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_16_33781916_33783310;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC133561.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359871    GT:AD:DP:GQ:PL    1/1:22,32:55:9:80,9,0
16    33783551    .    T    G    171.09    MQFilter40    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.15;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.63;MQ0=23;MQRankSum=0.921;QD=3.72;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC133561.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359871    GT:AD:DP:GQ:PL    0/1:21,25:46:63.70:201,0,64
16    33784056    .    A    G    35.03    MQFilter40;QDFilter2    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=10.86;MQ0=25;MQRankSum=-0.831;QD=0.92;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC133561.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359871    GT:AD:DP:GQ:PL    0/1:18,20:38:38.35:65,0,38
16    33941774    .    G    A    65.67    MQFilter40;QDFilter2    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DP=52;Dels=0.0;FS=5.076;HRun=3;HaplotypeScore=6.5802;MQ=29.78;MQ0=13;MQRankSum=-0.84;QD=1.26;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:38,12:52:95.66:96,0,449
16    33941856    rs75915968    G    A    165.52    MQFilter40    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.291;DB;DP=49;Dels=0.0;FS=1.55;HRun=3;HaplotypeScore=4.6621;MQ=37.88;MQ0=12;MQRankSum=-3.694;QD=3.38;ReadPosRankSum=-1.609;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,22:49:99:196,0,679
16    33941918    rs77703973    G    A    726    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.662;DB;DP=77;Dels=0.0;FS=2.442;HRun=1;HaplotypeScore=1.7046;MQ=42.06;MQ0=10;MQRankSum=-4.747;QD=9.43;ReadPosRankSum=2.289;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,40:77:99:756,0,969
16    33941931    rs78963127    T    A    740.50    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=2.48;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9156;MQ=43.65;MQ0=8;MQRankSum=-5.56;QD=10.14;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,43:73:99:770,0,904
16    33941961    rs79098043    C    A    682.04    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.747;DB;DP=101;Dels=0.0;FS=3.229;HRun=0;HaplotypeScore=1.9142;MQ=44.24;MQ0=19;MQRankSum=-5.707;QD=6.75;ReadPosRankSum=-0.404;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:54,43:101:99:712,0,1358
16    33941963    rs79711111    C    T    662.19    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.561;DB;DP=100;Dels=0.0;FS=6.21;HRun=0;HaplotypeScore=1.9142;MQ=43.9;MQ0=20;MQRankSum=-5.567;QD=6.62;ReadPosRankSum=-0.553;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:58,42:100:99:692,0,1405
16    33942022    rs62029032    A    G    503.05    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=2.535;DB;DP=111;Dels=0.0;FS=15.566;HRun=0;HaplotypeScore=0.0;MQ=42.15;MQ0=35;MQRankSum=-5.659;QD=4.49;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:46,65:111:99:533,0,1262
16    34274796    rs17782957    T    C    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407030    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
16    34281663    .    C    A    89.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=11.0952;MQ=54.74;MQ0=0;MQRankSum=-1.564;QD=2.81;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNYL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407030    GT:AD:DP:GQ:PL    0/1:16,16:32:99:120,0,141
16    34681938    rs237988    C    T    2479.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC018558.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398617    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2512,193,0
16    34682019    rs237989    G    A    2244.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC018558.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398617    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2278,166,0
16    46565019    rs1436436    T    G    730.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.09;SNPEFF_AMINO_ACID_CHANGE=K265T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_46565016_46565046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543951    GT:AD:DP:GQ:PL    1/1:0,28:28:57.19:763,57,0
16    46602415    rs7191748    T    C    107.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543951    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:140,12,0
16    46602819    rs12934443    C    T    177.13    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=11;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.9999;MQ=57.87;MQ0=0;MQRankSum=-0.48;QD=16.1;ReadPosRankSum=-0.898;SNPEFF_AMINO_ACID_CHANGE=R3;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_46602577_46602827;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD26P1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543951    GT:AD:DP:GQ:PL    0/1:3,8:11:54.28:207,0,54
16    46637746    rs4967259    T    C    416.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHCBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303383    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:450,36,0
16    46642456    rs8052092    A    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHCBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303383    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
16    46651417    rs34949348    TA    T    792.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=51.9582;IndelType=D;MQ=62.13;MQ0=0;QD=39.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHCBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303383    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:834,60,0
16    46655210    rs6598679    A    G    794.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=29.41;SNPEFF_AMINO_ACID_CHANGE=M21T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_46655169_46655538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHCBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303383    GT:AD:DP:GQ:PL    1/1:0,27:27:66.18:827,66,0
16    46696284    rs168745    G    A    1665.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_AMINO_ACID_CHANGE=H511;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_46696155_46696394;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541330    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1698,126,0
16    46697098    rs2304492    A    G    718.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299138    GT:AD:DP:GQ:PL    1/1:0,23:23:60.16:752,60,0
16    46702740    rs117178911    T    C    510.03    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.112;QD=13.78;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299138    GT:AD:DP:GQ:PL    0/1:19,18:37:99:540,0,636
16    46705502    rs36310    T    C    465.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299138    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:499,36,0
16    46714529    rs700582    A    G    410.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299138    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:443,33,0
16    46715191    rs700581    G    A    1114.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299138    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1147,87,0
16    46717312    rs695997    A    G    82.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=20.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299138    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
16    46726642    rs36314    A    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ORC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219097    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    46743355    rs34137112    G    GA    170.69    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=37;FS=2.722;HRun=13;HaplotypeScore=189.2528;IndelType=I;MQ=55.48;MQ0=0;MQRankSum=-0.057;QD=4.61;ReadPosRankSum=-0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394809    GT:AD:DP:GQ:PL    0/1:26,11:37:99:210,0,327
16    46743675    rs4141491    G    A    579.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394809    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:612,45,0
16    46744689    rs77620762    C    A    37.99    FSFilter60;HaplotypeScoreFilter13;QDFilter2    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.462;DB;DP=160;Dels=0.0;FS=125.834;HRun=2;HaplotypeScore=36.7624;MQ=51.66;MQ0=0;MQRankSum=-2.567;QD=0.24;ReadPosRankSum=2.397;SNPEFF_AMINO_ACID_CHANGE=L368F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_46744549_46744701;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536476    GT:AD:DP:GQ:PL    0/1:87,73:160:67.99:68,0,2399
16    46755213    rs194055    C    G    730.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394809    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:764,60,0
16    46764295    rs57610637    G    A    93.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394809    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
16    46764482    rs36460    A    C    1217.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394809    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1250,105,0
16    46773999    rs28407821    C    A    2991.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.636;DB;DP=98;Dels=0.0;FS=3.488;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.601;QD=30.53;ReadPosRankSum=0.813;SNPEFF_AMINO_ACID_CHANGE=V180L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_46773969_46774059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394809    GT:AD:DP:GQ:PL    1/1:1,97:98:99:3025,205,0
16    46774301    rs36463    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394809    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    46991292    rs12719758    G    A    342.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317089    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:376,27,0
16    46998384    rs12925077    G    A    69.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.64;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317089    GT:AD:DP:GQ:PL    0/1:3,3:6:89.43:100,0,89
16    47347780    rs2058769    G    A    292.06    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=19;Dels=0.0;FS=3.245;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=15.37;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320640    GT:AD:DP:GQ:PL    0/1:9,10:19:99:322,0,280
16    47462851    rs17811434    A    G    263.67    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.327;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=13.88;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320640    GT:AD:DP:GQ:PL    0/1:10,9:19:99:294,0,353
16    47486817    rs2111227    C    T    71.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.9;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITFG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320640    GT:AD:DP:GQ:PL    0/1:3,3:6:97.49:101,0,97
16    47549597    rs78297758    G    A    177.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.572;QD=22.19;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299167    GT:AD:DP:GQ:PL    0/1:2,6:8:57.22:208,0,57
16    47630455    rs117536391    G    T    817.46    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.14;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6649;MQ=59.69;MQ0=0;MQRankSum=-0.479;QD=10.9;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299167    GT:AD:DP:GQ:PL    0/1:46,29:75:99:847,0,1507
16    47684686    rs150516784    TATTA    T    899.35    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.618;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=142.5406;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=1.91;QD=29.98;ReadPosRankSum=2.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299167    GT:AD:DP:GQ:PL    0/1:12,18:30:99:938,0,755
16    47684830    rs34667348    C    A    365.64    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.523;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.508;QD=9.62;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=Q650K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_47684742_47684832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299167    GT:AD:DP:GQ:PL    0/1:23,15:38:99:396,0,761
16    47732512    rs35641157    C    CT    57.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=28;FS=0.0;HRun=21;HaplotypeScore=289.3545;IndelType=I;MQ=47.55;MQ0=0;MQRankSum=-0.747;QD=2.04;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299167    GT:AD:DP:GQ:PL    1/1:20,6:28:9.90:98,10,0
16    48118036    rs4785376    C    T    1224.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526251    GT:AD:DP:GQ:PL    1/1:0,35:35:96.29:1257,96,0
16    48122582    rs7193955    G    A    1773.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=36.95;SNPEFF_AMINO_ACID_CHANGE=R1117C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_48122456_48122645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311303    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1806,132,0
16    48134842    rs41280921    G    A    520.41    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=-0.065;QD=12.69;ReadPosRankSum=0.431;SNPEFF_AMINO_ACID_CHANGE=L915F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_48134783_48134920;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448542    GT:AD:DP:GQ:PL    0/1:22,19:41:99:550,0,703
16    48164777    rs12149826    T    C    1236.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=V328;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_48164699_48164806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449939    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1269,93,0
16    48173381    rs8046826    G    A    203.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527640    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:236,18,0
16    48201432    rs16945916    T    C    1534.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.49;MQ0=0;QD=34.11;SNPEFF_AMINO_ACID_CHANGE=H1306R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_48201407_48201571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353782    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1568,120,0
16    48201678    rs41280941    C    A    433.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353782    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:467,36,0
16    48201707    rs16945917    A    G    240.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353782    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:274,24,0
16    48203877    .    T    TTGTTGC    811.23    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DP=13;FS=0.0;HRun=0;HaplotypeScore=55.8348;IndelType=I;MQ=49.59;MQ0=0;MQRankSum=-0.668;QD=62.4;ReadPosRankSum=-1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353782    GT:AD:DP:GQ:PL    0/1:1,10:13:30.01:850,0,30
16    48204078    rs61739606    T    A    4689.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.404;DB;DP=149;Dels=0.0;FS=3.04;HRun=0;HaplotypeScore=0.9967;MQ=58.37;MQ0=0;MQRankSum=-0.094;QD=31.47;ReadPosRankSum=-0.936;SNPEFF_AMINO_ACID_CHANGE=N1277Y;SNPEFF_CODON_CHANGE=Aac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_48204016_48204129;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356608    GT:AD:DP:GQ:PL    1/1:1,148:149:99:4689,316,0
16    48227862    rs11866251    G    A    851.99    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.558;DB;DP=65;Dels=0.0;FS=5.067;HRun=2;HaplotypeScore=0.5784;MQ=59.65;MQ0=0;MQRankSum=-0.598;QD=13.11;ReadPosRankSum=-0.847;SNPEFF_AMINO_ACID_CHANGE=F812;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_48227790_48227893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353782    GT:AD:DP:GQ:PL    0/1:34,31:65:99:882,0,930
16    48261815    rs145048685    C    T    764.08    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.135;DB;DP=48;Dels=0.0;FS=15.413;HRun=0;HaplotypeScore=4.3641;MQ=60.0;MQ0=0;MQRankSum=1.116;QD=15.92;ReadPosRankSum=0.726;SNPEFF_AMINO_ACID_CHANGE=W99*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_16_48261717_48261875;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000353782    GT:AD:DP:GQ:PL    0/1:19,29:48:99:794,0,617
16    48532560    rs4785521    A    G    698.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,20:21:57.18:731,57,0
16    48579938    rs66763234    C    CA    44.54    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;FS=0.0;HRun=14;HaplotypeScore=78.6942;IndelType=I;MQ=58.88;MQ0=0;MQRankSum=0.361;QD=4.05;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N4BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262384    GT:AD:DP:GQ:PL    0/1:6,5:11:39.56:84,0,40
16    49314837    rs61735589    T    G    544.27    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=3.024;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=11.58;ReadPosRankSum=-1.616;SNPEFF_AMINO_ACID_CHANGE=I127;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_49314834_49314953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219197    GT:AD:DP:GQ:PL    0/1:25,22:47:99:574,0,717
16    49412531    rs27813    A    G    487.22    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=0.256;DB;DP=37;Dels=0.0;FS=1.402;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.939;QD=13.17;ReadPosRankSum=1.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299191    GT:AD:DP:GQ:PL    0/1:14,23:37:99:517,0,363
16    49432926    rs4785287    C    A    325.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=18.06;ReadPosRankSum=1.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299191    GT:AD:DP:GQ:PL    0/1:8,10:18:99:355,0,194
16    49670390    rs3803667    A    G    390.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=36;Dels=0.0;FS=1.365;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.949;QD=10.86;ReadPosRankSum=-1.777;SNPEFF_AMINO_ACID_CHANGE=C774;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_49669571_49672785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF423;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535559    GT:AD:DP:GQ:PL    0/1:18,18:36:99:421,0,573
16    49672520    rs3803665    A    G    414.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.487;DB;DP=28;Dels=0.0;FS=3.558;HRun=0;HaplotypeScore=1.3123;MQ=57.48;MQ0=0;MQRankSum=0.952;QD=14.79;ReadPosRankSum=0.673;SNPEFF_AMINO_ACID_CHANGE=R181;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_49669571_49672785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF423;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262383    GT:AD:DP:GQ:PL    0/1:12,16:28:99:444,0,376
16    49764948    rs2292155    C    T    749.37    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=5.203;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=15.94;ReadPosRankSum=1.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF423;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262383    GT:AD:DP:GQ:PL    0/1:24,23:47:99:779,0,678
16    49856691    rs8060387    G    C    1025.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF423;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262383    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1058,78,0
16    50059500    rs7194313    C    T    276.76    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=17;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=16.28;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389134    GT:AD:DP:GQ:PL    0/1:8,9:17:99:307,0,240
16    50060203    rs17213264    A    G    270.17    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.099;QD=20.78;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389134    GT:AD:DP:GQ:PL    0/1:3,10:13:85.54:300,0,86
16    50069312    rs2041918    C    G    85.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=14.17;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM188;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389134    GT:AD:DP:GQ:PL    0/1:2,4:6:69.19:115,0,69
16    50100253    rs4389139    T    A    105.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.51;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,179
16    50102618    rs60730387    G    GAAAT    1991.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=85.665;IndelType=I;MQ=51.01;MQ0=0;QD=73.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    1/1:0,25:27:78.27:2033,78,0
16    50106594    rs2287197    T    C    136.43    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.664;DB;DP=25;Dels=0.0;FS=4.304;HRun=2;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.888;QD=5.46;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=F111;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_50106516_50106625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    0/1:17,8:25:99:166,0,528
16    50109478    rs12931497    G    A    824.54    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.564;DB;DP=61;Dels=0.0;FS=1.077;HRun=0;HaplotypeScore=0.9789;MQ=59.62;MQ0=0;MQRankSum=-1.178;QD=13.52;ReadPosRankSum=-0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    0/1:33,28:61:99:855,0,866
16    50112971    rs66756058    GT    G    724.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DB;DP=38;FS=5.586;HRun=10;HaplotypeScore=115.2898;IndelType=D;MQ=59.59;MQ0=0;MQRankSum=1.134;QD=19.08;ReadPosRankSum=0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    1/1:5,33:38:35.59:767,36,0
16    50117828    rs11356088    CT    C    193.99    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=45;FS=10.372;HRun=16;HaplotypeScore=242.6298;IndelType=D;MQ=56.02;MQ0=0;MQRankSum=-0.127;QD=4.31;ReadPosRankSum=0.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    0/1:21,21:45:99:233,0,299
16    50118245    rs877639    G    A    46.95    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=4.27;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    0/1:8,3:11:76.95:77,0,305
16    50120122    rs2287196    C    T    105.33    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.07;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:135,0,28
16    50128489    rs137967056    TTTTG    T    211.15    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=2.663;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=83.9366;IndelType=D;MQ=57.53;MQ0=0;MQRankSum=-0.251;QD=11.11;ReadPosRankSum=0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    0/1:13,6:19:99:250,0,730
16    50134008    rs11355227    TA    T    160.78    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=48.4766;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=0.177;QD=10.05;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    0/1:10,6:16:99:200,0,387
16    50136526    rs1477132    C    T    84.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HEATR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285767    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
16    50251590    rs3887556    G    A    505.60    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.021;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.31;MQ0=0;MQRankSum=-0.742;QD=11.24;ReadPosRankSum=-0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357464    GT:AD:DP:GQ:PL    0/1:25,20:45:99:536,0,789
16    50261735    rs4624170    C    T    3599.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357464    GT:AD:DP:GQ:PL    1/1:1,101:103:99:3600,262,0
16    50326661    rs8051594    A    G    1396.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=27.38;SNPEFF_AMINO_ACID_CHANGE=A204;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_50326587_50326736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254235    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1429,114,0
16    50327439    rs2302712    A    G    138.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=15;Dels=0.0;FS=19.59;HRun=0;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=0.53;QD=9.21;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254235    GT:AD:DP:GQ:PL    0/1:9,6:15:99:168,0,306
16    50327456    rs2302713    C    T    262.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=26.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254235    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:296,24,0
16    50327462    rs2302714    G    A    103.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=12.95;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254235    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,135
16    50328483    rs8061123    G    C    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254235    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:75,0,30
16    50338723    rs9924714    C    T    66.28    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.63;MQ0=0;MQRankSum=-1.709;QD=3.9;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254235    GT:AD:DP:GQ:PL    0/1:10,7:17:96.27:96,0,285
16    50339289    rs12444679    C    T    366.15    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=15.92;ReadPosRankSum=0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254235    GT:AD:DP:GQ:PL    0/1:11,12:23:99:396,0,378
16    50345778    rs2302679    T    C    235.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.43;MQ0=0;QD=21.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537579    GT:AD:DP:GQ:PL    1/1:0,10:11:24.05:269,24,0
16    50346748    rs35732926    T    TCC    2093.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=2;HaplotypeScore=85.9089;IndelType=I;MQ=58.37;MQ0=1;QD=52.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537579    GT:AD:DP:GQ:PL    1/1:1,39:38:99:2136,114,0
16    50348409    rs9926131    A    T    233.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537579    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:267,21,0
16    50353708    rs72786265    C    T    1478.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=38.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCY7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254235    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1512,108,0
16    50359901    rs8046783    G    A    247.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394688    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
16    50367633    rs79338456    T    TA    2436    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.0;HRun=10;HaplotypeScore=248.5707;IndelType=I;MQ=59.81;MQ0=0;QD=28.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475877    GT:AD:DP:GQ:PL    1/1:7,78:86:99:2478,234,0
16    50368863    rs143461189    GCATTTTTTTCCCCA    G    1362.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=225.7695;IndelType=D;MQ=38.61;MQ0=0;QD=75.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394688    GT:AD:DP:GQ:PL    1/1:5,13:17:39.13:1404,39,0
16    50388657    rs4407056    G    A    4078.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8216;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394688    GT:AD:DP:GQ:PL    1/1:0,125:125:99:4078,298,0
16    50642201    rs933566    G    C    1944.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.39;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268459    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1978,144,0
16    50733374    rs2076753    G    T    1740.59    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=4.951;DB;DP=112;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=1.7608;MQ=59.79;MQ0=0;MQRankSum=-0.324;QD=15.54;ReadPosRankSum=-0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300589    GT:AD:DP:GQ:PL    0/1:53,59:112:99:1771,0,1351
16    50733859    rs2067085    C    G    233.67    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=18;Dels=0.0;FS=2.304;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=12.98;ReadPosRankSum=0.844;SNPEFF_AMINO_ACID_CHANGE=S151;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_50733399_50733865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526417    GT:AD:DP:GQ:PL    0/1:10,8:18:99:264,0,270
16    50733969    rs2111235    A    G    156.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531674    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:190,15,0
16    50744624    rs2066842    C    T    277.05    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=17;Dels=0.0;FS=9.971;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=16.3;ReadPosRankSum=1.122;SNPEFF_AMINO_ACID_CHANGE=P241S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_50744469_50746284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000526417    GT:AD:DP:GQ:PL    0/1:7,10:17:99:307,0,228
16    50745199    rs2066843    C    T    1112.62    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.178;DB;DP=78;Dels=0.0;FS=8.317;HRun=0;HaplotypeScore=0.9469;MQ=58.81;MQ0=0;MQRankSum=0.769;QD=14.26;ReadPosRankSum=0.197;SNPEFF_AMINO_ACID_CHANGE=R432;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_50744469_50746284;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526417    GT:AD:DP:GQ:PL    0/1:38,40:78:99:1143,0,1126
16    50745583    rs1861759    T    G    459.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6643;MQ=60.0;MQ0=0;MQRankSum=1.746;QD=22.99;ReadPosRankSum=0.436;SNPEFF_AMINO_ACID_CHANGE=R560;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_50744469_50746284;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526417    GT:AD:DP:GQ:PL    0/1:5,15:20:99:490,0,143
16    50756540    rs2066845    G    C    1794.92    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.64;DB;DP=139;Dels=0.0;FS=3.051;HRun=0;HaplotypeScore=0.5784;MQ=59.67;MQ0=0;MQRankSum=1.071;QD=12.91;ReadPosRankSum=-0.334;SNPEFF_AMINO_ACID_CHANGE=G48R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_50756533_50756616;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431240    GT:AD:DP:GQ:PL    0/1:71,68:139:99:1825,0,2270
16    50759267    rs138198313    AC    A    178.97    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=56.9456;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=16.27;ReadPosRankSum=-2.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524712    GT:AD:DP:GQ:PL    0/1:4,7:11:99:218,0,159
16    50759547    rs1077861    A    T    1132.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524712    GT:AD:DP:GQ:PL    1/1:0,34:34:90.27:1165,90,0
16    50813997    rs17222902    G    A    554.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.642;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.48;MQ0=0;MQRankSum=0.459;QD=15.39;ReadPosRankSum=0.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311559    GT:AD:DP:GQ:PL    0/1:18,18:36:99:584,0,502
16    50815432    rs1420871    C    T    157.01    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=15.7;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311559    GT:AD:DP:GQ:PL    0/1:3,7:10:73.34:187,0,73
16    50826462    rs10451132    G    T    128.61    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=2.065;DB;DP=23;Dels=0.0;FS=3.349;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.645;QD=5.59;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311559    GT:AD:DP:GQ:PL    0/1:17,6:23:99:159,0,514
16    50827518    rs2066852    C    T    1649.40    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=3.738;DB;DP=115;Dels=0.0;FS=3.625;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.199;QD=14.34;ReadPosRankSum=-0.773;SNPEFF_AMINO_ACID_CHANGE=D801;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_50827457_50827575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398568    GT:AD:DP:GQ:PL    0/1:54,61:115:99:1679,0,1498
16    50827601    rs2302759    A    G    1877.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYLD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311559    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1910,144,0
16    51098427    rs1528601    G    C    286.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:320,24,0
16    51171175    rs4614723    C    T    1891.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.57;MQ0=0;QD=32.06;SNPEFF_AMINO_ACID_CHANGE=V1178I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_51169886_51171463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440970    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1925,144,0
16    51171670    rs1465338    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251020    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
16    51173559    rs1965024    G    A    2852.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_AMINO_ACID_CHANGE=L761;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_51172599_51176056;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440970    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2886,214,0
16    52479771    rs2075236    A    T    240.40    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.897;DB;DP=25;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.278;QD=9.62;ReadPosRankSum=-2.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219746    GT:AD:DP:GQ:PL    0/1:13,12:25:99:270,0,456
16    52484079    rs67375262    T    C    69.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.68;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219746    GT:AD:DP:GQ:PL    0/1:6,3:9:99:99,0,224
16    52502318    rs2287144    A    G    652.54    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.68;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8279;MQ=59.62;MQ0=0;MQRankSum=-0.399;QD=10.7;ReadPosRankSum=-2.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219746    GT:AD:DP:GQ:PL    0/1:32,29:61:99:683,0,1102
16    52502571    rs9928698    A    C    783.22    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.368;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.085;QD=15.36;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219746    GT:AD:DP:GQ:PL    0/1:24,27:51:99:813,0,819
16    53191470    rs12597487    T    C    1474.89    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.623;DB;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.713;QD=12.61;ReadPosRankSum=-0.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398510    GT:AD:DP:GQ:PL    0/1:62,55:117:99:1505,0,2115
16    53243263    rs8053957    G    T    93.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=9.33;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:5,5:10:99:123,0,177
16    53256494    rs12597253    T    A    63.92    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.354;QD=4.57;ReadPosRankSum=1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:10,4:14:93.92:94,0,372
16    53260159    rs12599784    T    A    107.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:2,4:6:58.72:137,0,59
16    53262964    rs35198193    C    T    1093.51    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.734;DB;DP=78;Dels=0.0;FS=4.638;HRun=1;HaplotypeScore=1.9998;MQ=59.46;MQ0=0;MQRankSum=-0.185;QD=14.02;ReadPosRankSum=-0.165;SNPEFF_AMINO_ACID_CHANGE=I272;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53262895_53263012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:40,38:78:99:1124,0,1157
16    53269316    rs2110843    T    A    610.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    1/1:0,16:17:48.16:644,48,0
16    53272216    rs8049913    A    C    810.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.44;DB;DP=78;Dels=0.0;FS=4.239;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.49;QD=10.39;ReadPosRankSum=1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:39,39:78:99:841,0,1360
16    53279123    rs138968213    TA    T    164.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=31.6882;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.47;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:4,6:10:99:204,0,150
16    53283966    rs8052283    G    A    2130.08    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=153;Dels=0.0;FS=7.96;HRun=2;HaplotypeScore=0.8941;MQ=59.4;MQ0=0;MQRankSum=-1.297;QD=13.92;ReadPosRankSum=0.983;SNPEFF_AMINO_ACID_CHANGE=Q1283;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53283783_53283978;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398510    GT:AD:DP:GQ:PL    0/1:76,77:153:99:2160,0,2347
16    53288265    rs6499510    G    A    1168.25    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.743;QD=18.84;ReadPosRankSum=0.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:28,34:62:99:1198,0,956
16    53319390    rs112281896    T    TAATGA    2522.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=118.2406;IndelType=I;MQ=52.71;MQ0=0;QD=78.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    1/1:9,23:32:87.30:2564,87,0
16    53320025    rs8056394    G    A    335.18    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.675;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.571;QD=12.89;ReadPosRankSum=0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:15,11:26:99:365,0,532
16    53321734    rs3815548    T    C    577.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:610,45,0
16    53325691    rs1894903    G    A    1615.98    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=2.82;DB;DP=128;Dels=0.0;FS=4.474;HRun=0;HaplotypeScore=8.4933;MQ=59.64;MQ0=0;MQRankSum=-0.906;QD=12.62;ReadPosRankSum=-1.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:67,61:128:99:1646,0,1981
16    53326860    rs2287078    G    A    2263.28    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.98;DB;DP=153;Dels=0.0;FS=0.644;HRun=1;HaplotypeScore=4.14;MQ=59.67;MQ0=0;MQRankSum=0.23;QD=14.79;ReadPosRankSum=0.552;SNPEFF_AMINO_ACID_CHANGE=Q170;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53326745_53326964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450543    GT:AD:DP:GQ:PL    0/1:78,75:153:99:2293,0,2348
16    53327041    rs7188463    A    G    238    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.556;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.176;QD=15.87;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:7,8:15:99:268,0,242
16    53340080    rs3760010    G    A    2261.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=59.64;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2295,172,0
16    53341748    rs6499548    T    G    2870.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.73;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=D2312E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53341593_53341817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398510    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2904,217,0
16    53342860    rs12596466    C    T    335.07    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=13.96;ReadPosRankSum=-1.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:11,13:24:99:365,0,385
16    53348207    rs8055218    T    A    301.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.07;MQ0=0;MQRankSum=0.25;QD=12.08;ReadPosRankSum=0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:15,10:25:99:332,0,505
16    53348583    rs3803658    T    C    136.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=6.532;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.336;QD=13.69;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,174
16    53349000    rs12596829    G    A    684.67    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.709;DB;DP=65;Dels=0.0;FS=1.268;HRun=1;HaplotypeScore=1.7319;MQ=60.0;MQ0=0;MQRankSum=-1.047;QD=10.53;ReadPosRankSum=0.948;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:39,26:65:99:715,0,1209
16    53352329    rs16952168    T    C    272.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.006;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.131;QD=12.38;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219084    GT:AD:DP:GQ:PL    0/1:11,11:22:99:302,0,393
16    53358439    rs3743771    A    G    1429.64    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9148;MQ=59.27;MQ0=0;MQRankSum=-0.237;QD=11.26;ReadPosRankSum=-0.82;SNPEFF_AMINO_ACID_CHANGE=T2760A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53357932_53361413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398510    GT:AD:DP:GQ:PL    0/1:73,54:127:99:1460,0,2253
16    53396356    rs2908778    T    C    2384.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2417,193,0
16    53476804    rs17800577    G    A    237.78    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.2;DB;DP=22;Dels=0.0;FS=4.775;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.668;QD=10.81;ReadPosRankSum=1.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262133    GT:AD:DP:GQ:PL    0/1:13,9:22:99:268,0,368
16    53496439    rs71951793    GT    G    547.68    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=2.231;DB;DP=46;FS=3.927;HRun=11;HaplotypeScore=138.3662;IndelType=D;MQ=59.91;MQ0=0;MQRankSum=2.149;QD=11.91;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262133    GT:AD:DP:GQ:PL    0/1:16,30:46:99:587,0,282
16    53496598    rs7204496    G    A    309.63    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.847;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=14.07;ReadPosRankSum=-1.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262133    GT:AD:DP:GQ:PL    0/1:8,13:22:99:340,0,274
16    53498402    rs4784312    T    C    301.27    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.775;QD=12.55;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262133    GT:AD:DP:GQ:PL    0/1:14,10:24:99:331,0,476
16    53499599    rs1072910    A    G    193.96    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.049;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.39;MQ0=0;MQRankSum=-1.317;QD=10.78;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262133    GT:AD:DP:GQ:PL    0/1:11,7:18:99:224,0,362
16    53503934    rs1131220    G    A    609.50    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9866;MQ=58.84;MQ0=0;MQRankSum=0.489;QD=10.88;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=T404;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53503828_53504097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379935    GT:AD:DP:GQ:PL    0/1:29,27:56:99:639,0,824
16    53504721    rs10748    T    C    1147.45    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.241;DB;DP=73;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=1.502;QD=15.72;ReadPosRankSum=-0.98;SNPEFF_AMINO_ACID_CHANGE=L574;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53504658_53504834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379935    GT:AD:DP:GQ:PL    0/1:33,40:73:99:1177,0,1103
16    53513033    rs8043918    C    T    489.60    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.48;QD=13.6;ReadPosRankSum=0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262133    GT:AD:DP:GQ:PL    0/1:20,16:36:99:520,0,663
16    53513055    rs8049033    T    C    579.51    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=45;Dels=0.0;FS=6.515;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.103;QD=12.88;ReadPosRankSum=-0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262133    GT:AD:DP:GQ:PL    0/1:24,21:45:99:610,0,692
16    53524308    rs3929    G    C    199.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.154;QD=14.28;ReadPosRankSum=0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300245    GT:AD:DP:GQ:PL    0/1:7,7:14:99:230,0,251
16    53526551    rs9931702    C    T    686.97    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.236;DB;DP=55;Dels=0.0;FS=11.311;HRun=0;HaplotypeScore=8.6308;MQ=59.58;MQ0=0;MQRankSum=-0.385;QD=12.49;ReadPosRankSum=-0.875;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262133    GT:AD:DP:GQ:PL    0/1:32,23:55:99:717,0,1088
16    53534095    rs17193678    T    A    398.05    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.918;DB;DP=31;Dels=0.0;FS=8.806;HRun=3;HaplotypeScore=0.9998;MQ=58.5;MQ0=0;MQRankSum=0.377;QD=12.84;ReadPosRankSum=-1.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300245    GT:AD:DP:GQ:PL    0/1:14,17:31:99:428,0,489
16    53635933    rs4784319    A    T    134.19    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=19.17;ReadPosRankSum=0.922;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262135    GT:AD:DP:GQ:PL    0/1:2,5:7:60.01:164,0,60
16    53644789    rs147132440    C    T    263.47    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.839;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.203;QD=15.5;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262135    GT:AD:DP:GQ:PL    0/1:8,9:17:99:293,0,275
16    53671754    rs2111119    C    T    813.12    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=76;Dels=0.0;FS=2.003;HRun=2;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.925;QD=10.7;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=G1025S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53671607_53671766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379925    GT:AD:DP:GQ:PL    0/1:46,30:76:99:843,0,1325
16    53672355    rs7203525    C    T    239.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.561;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.706;QD=13.32;ReadPosRankSum=-1.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262135    GT:AD:DP:GQ:PL    0/1:9,9:18:99:270,0,314
16    53692199    rs7192060    T    C    156.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.52;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262135    GT:AD:DP:GQ:PL    0/1:3,5:8:93.64:186,0,94
16    53698676    rs5005161    T    C    204.81    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.556;DB;DP=16;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=12.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262135    GT:AD:DP:GQ:PL    0/1:7,9:16:99:235,0,232
16    53699003    rs4133017    G    A    676.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262135    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:709,57,0
16    53720436    rs61747071    C    T    601.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.83;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=14.33;ReadPosRankSum=0.665;SNPEFF_AMINO_ACID_CHANGE=A229T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_53720345_53720488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262135    GT:AD:DP:GQ:PL    0/1:21,21:42:99:632,0,691
16    53725914    rs76665976    G    T    601.94    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.318;DB;DP=38;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.8667;MQ=59.39;MQ0=0;MQRankSum=1.155;QD=15.84;ReadPosRankSum=1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPGRIP1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262135    GT:AD:DP:GQ:PL    0/1:18,20:38:99:632,0,574
16    53860481    rs3826169    G    A    63.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.322;QD=7.06;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394647    GT:AD:DP:GQ:PL    0/1:6,3:9:93.55:94,0,188
16    53913930    rs11076004    G    A    35.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.13;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394647    GT:AD:DP:GQ:PL    0/1:4,3:7:65.93:66,0,150
16    54144925    rs708278    A    G    4602.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8646;MQ=59.27;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268349    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4602,340,0
16    54318102    rs8050831    C    T    406.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541845    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:440,33,0
16    54318172    rs1126960    C    A    333.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.591;QD=15.14;ReadPosRankSum=-1.182;SNPEFF_AMINO_ACID_CHANGE=Q479H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_54318158_54318224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329734    GT:AD:DP:GQ:PL    0/1:11,11:22:99:363,0,356
16    54319571    rs1868692    A    G    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329734    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    54319994    rs1868691    G    C    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541845    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
16    54967957    rs7190373    A    C    179.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447390    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:212,18,0
16    54967959    rs1133610    A    C    166.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447390    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:199,18,0
16    55359126    rs31078    A    T    152.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290552    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:186,15,0
16    55359141    rs31079    T    C    130.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290552    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:163,15,0
16    55360208    rs31081    G    T    56.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290552    GT:AD:DP:GQ:PL    1/1:0,6:6:9.01:88,9,0
16    55516708    rs857403    T    A    474.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:508,39,0
16    55517880    rs17859871    C    T    361.60    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.573;DB;DP=32;Dels=0.0;FS=2.013;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.842;QD=11.3;ReadPosRankSum=0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    0/1:19,13:32:99:392,0,662
16    55523705    rs243849    T    C    893.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.516;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.108;QD=27.91;ReadPosRankSum=0.433;SNPEFF_AMINO_ACID_CHANGE=D307;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55523563_55523736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543485    GT:AD:DP:GQ:PL    1/1:1,31:32:43.01:926,43,0
16    55523998    rs243847    T    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
16    55525913    rs243846    G    C    391.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:424,33,0
16    55527026    rs11640428    A    T    189.64    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=11.16;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    0/1:9,8:17:99:220,0,321
16    55527113    rs2287074    G    A    1013.19    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.783;DB;DP=57;Dels=0.0;FS=5.455;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.455;QD=17.78;ReadPosRankSum=-0.538;SNPEFF_AMINO_ACID_CHANGE=T384;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55527070_55527205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543485    GT:AD:DP:GQ:PL    0/1:24,33:57:99:1043,0,635
16    55527298    rs243843    G    A    833.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    1/1:0,25:25:72.20:866,72,0
16    55530762    rs171498    G    T    296.59    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=15.61;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    0/1:8,11:19:99:327,0,257
16    55530772    rs243838    T    G    604.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:637,51,0
16    55532458    rs2287076    T    C    135.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.191;QD=11.27;ReadPosRankSum=-1.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    0/1:6,6:12:99:165,0,215
16    55536622    rs243835    C    T    84.49    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.244;QD=7.04;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    0/1:7,5:12:99:114,0,258
16    55536687    rs243834    A    G    590.56    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=1.675;DB;DP=29;Dels=0.0;FS=1.708;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.849;QD=20.36;ReadPosRankSum=0.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    0/1:10,19:29:99:621,0,322
16    55536727    rs14070    C    T    363.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.522;QD=10.09;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=F526;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55536691_55536800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543485    GT:AD:DP:GQ:PL    0/1:22,14:36:99:393,0,665
16    55539191    rs243832    C    G    1167.64    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.305;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.69;MQ0=0;MQRankSum=-2.48;QD=16.45;ReadPosRankSum=-0.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    0/1:34,37:71:99:1198,0,1078
16    55543073    rs17302903    G    C    35.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.9;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    0/1:2,2:4:60.19:66,0,60
16    55543322    rs2241147    G    T    125.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219070    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
16    55562257    rs837549    G    A    895.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:928,69,0
16    55562466    rs837550    G    A    1083.93    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=67;Dels=0.0;FS=0.936;HRun=0;HaplotypeScore=2.651;MQ=59.66;MQ0=0;MQRankSum=-0.987;QD=16.18;ReadPosRankSum=0.094;SNPEFF_AMINO_ACID_CHANGE=M163I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55562289_55562506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    0/1:31,36:67:99:1114,0,922
16    55562572    rs71393085    T    C    393.44    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.403;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.279;QD=17.11;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    0/1:10,13:23:99:423,0,332
16    55571303    rs67945276    C    A    31.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=14;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
16    55579899    rs2397722    G    A    122.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
16    55583149    rs2160277    T    A    1186.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=1.9978;MQ=59.13;MQ0=0;QD=22.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1220,123,0
16    55583448    rs9934904    A    T    211.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
16    55601388    rs1502003    A    G    1385.24    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=95;Dels=0.0;FS=5.738;HRun=0;HaplotypeScore=0.9789;MQ=59.76;MQ0=0;MQRankSum=1.599;QD=14.58;ReadPosRankSum=-1.229;SNPEFF_AMINO_ACID_CHANGE=E240;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55600584_55601599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPNS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457326    GT:AD:DP:GQ:PL    0/1:43,51:95:99:1415,0,1446
16    55612918    rs4784549    T    A    814.02    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.827;DB;DP=57;Dels=0.0;FS=7.151;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.025;QD=14.28;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    0/1:28,29:57:99:844,0,996
16    55617127    rs12934747    C    T    150.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-1.001;QD=16.73;ReadPosRankSum=-1.422;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262134    GT:AD:DP:GQ:PL    0/1:3,6:9:89.89:181,0,90
16    55690425    rs2242446    C    T    362.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414754    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
16    55718884    rs2270935    T    C    130.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
16    55728081    rs28613651    T    G    442.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:476,39,0
16    55729124    rs2279805    T    C    534.84    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.63;DB;DP=34;Dels=0.0;FS=3.456;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.463;QD=15.73;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    0/1:15,19:34:99:565,0,435
16    55729396    rs41280878    C    T    123.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.065;QD=8.83;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    0/1:8,6:14:99:154,0,274
16    55730124    rs5568    A    C    315.48    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=2.715;DB;DP=43;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.181;QD=7.34;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    0/1:30,13:43:99:345,0,1046
16    55730435    rs28553550    T    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    55731835    rs5569    G    A    351.20    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=25;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.021;QD=14.05;ReadPosRankSum=0.458;SNPEFF_AMINO_ACID_CHANGE=T143;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55731809_55731937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537705    GT:AD:DP:GQ:PL    0/1:12,13:25:99:381,0,317
16    55731946    rs998424    G    A    673.05    PASS    AB=0.325;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.704;DB;DP=40;Dels=0.0;FS=3.057;HRun=0;HaplotypeScore=0.8941;MQ=59.42;MQ0=0;MQRankSum=-0.606;QD=16.83;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    0/1:13,27:40:99:703,0,371
16    55733589    rs1800887    T    C    167.56    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.71;QD=11.17;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    0/1:8,6:15:99:198,0,283
16    55735912    rs2242447    C    T    539.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=17.97;ReadPosRankSum=0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219833    GT:AD:DP:GQ:PL    0/1:12,18:30:99:569,0,393
16    55762200    rs4784559    G    A    1163.62    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.677;DB;DP=87;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=0.6651;MQ=59.79;MQ0=0;MQRankSum=0.428;QD=13.37;ReadPosRankSum=1.23;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:46,40:87:99:1194,0,1447
16    55780826    rs6499782    G    A    959.64    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.31;MQ0=0;MQRankSum=0.367;QD=16.55;ReadPosRankSum=0.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:26,32:58:99:990,0,813
16    55783511    rs73547960    G    A    192.36    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=29;Dels=0.0;FS=1.707;HRun=0;HaplotypeScore=0.0;MQ=44.37;MQ0=2;MQRankSum=0.871;QD=6.63;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,8:29:99:222,0,416
16    55783706    rs1807210    T    C    181.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.88;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:214,18,0
16    55807252    rs62030211    G    T    251.58    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.73;MQ0=2;QD=22.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:2,9:11:27.05:285,27,0
16    55807256    rs60044394    A    G    240.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.73;MQ0=2;QD=21.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,11:11:27.04:273,27,0
16    55807448    rs149224370    C    T    194.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.43;MQ0=33;QD=4.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:18,22:40:21.04:227,21,0
16    55807461    rs28444662    C    A    156.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.17;MQ0=27;QD=4.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:13,20:33:18.03:190,18,0
16    55810670    rs28406579    A    G    1563.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1597,132,0
16    55810836    rs77976572    A    C    50.45    QDFilter2    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=2.641;DB;DP=134;Dels=0.0;FS=2.953;HRun=1;HaplotypeScore=1.6229;MQ=55.87;MQ0=7;MQRankSum=-5.795;QD=0.38;ReadPosRankSum=0.271;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    0/1:114,20:134:80.44:80,0,3385
16    55810871    rs79413564    G    T    159.41    QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=0.22;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=54.18;MQ0=8;MQRankSum=-5.922;QD=1.64;ReadPosRankSum=2.643;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    0/1:75,22:97:99:189,0,2573
16    55810901    .    A    G    181.47    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=1.341;DP=61;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8255;MQ=53.69;MQ0=4;MQRankSum=-5.295;QD=2.97;ReadPosRankSum=-1.634;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    0/1:45,16:61:99:211,0,1543
16    55813552    rs28666799    C    T    2616.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=56.2;MQ0=0;MQRankSum=1.311;QD=34.88;ReadPosRankSum=1.217;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:1,73:74:99:2649,202,0
16    55813600    rs28538101    T    C    4314.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.12;MQ0=0;QD=30.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,142:143:99:4314,349,0
16    55813644    rs28418425    C    T    6020.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=189;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1146;MQ=58.02;MQ0=0;QD=31.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,189:189:99:6020,463,0
16    55813712    rs28613114    G    T    4877.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=59.59;MQ0=0;QD=35.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4877,361,0
16    55813750    rs28594163    G    A    3068.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=35.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3102,232,0
16    55817357    rs28496801    G    A    296.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:330,24,0
16    55819305    rs28495768    G    T    77.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=25.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
16    55819323    rs28698786    A    G    87.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
16    55819500    rs28620993    C    T    900.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:933,69,0
16    55819676    rs28420798    A    C    642.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=58.71;MQ0=0;QD=35.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:675,54,0
16    55819902    rs34676034    GAGA    G    3322.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.0;HRun=0;HaplotypeScore=280.117;IndelType=D;MQ=55.98;MQ0=0;QD=51.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CES1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421606    GT:AD:DP:GQ:PL    1/1:1,64:65:99:3322,196,0
16    55844609    rs2244613    G    T    1685.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1718,129,0
16    55844617    rs2244614    G    A    1606.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1639,120,0
16    55844926    rs2244725    A    AC    575.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=65.0139;IndelType=I;MQ=60.99;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:2,17:19:54.06:617,54,0
16    55846689    rs1965658    T    C    276.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:310,24,0
16    55847045    rs3859092    A    G    676.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=37.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:710,54,0
16    55847051    rs3859093    C    T    603.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:637,48,0
16    55850566    rs2302720    G    A    163.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
16    55850708    rs2302719    T    G    1700.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1733,153,0
16    55853318    rs1833250    G    T    973.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1007,75,0
16    55854246    rs2307242    G    T    88.40    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.49;MQ0=31;MQRankSum=0.421;QD=2.27;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:18,21:39:99:118,0,115
16    55854259    rs2307237    G    A    85.43    MQFilter40;QDFilter2    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=14.34;MQ0=38;MQRankSum=0.365;QD=1.78;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:23,25:48:99:115,0,159
16    55854412    rs2307229    A    T    386.60    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.576;DB;DP=45;Dels=0.0;FS=5.969;HRun=0;HaplotypeScore=0.0;MQ=25.48;MQ0=20;MQRankSum=0.481;QD=8.59;ReadPosRankSum=-3.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:18,27:45:99:417,0,257
16    55854452    rs2307233    G    A    437.04    MQFilter40    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.445;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.99;MQ0=4;MQRankSum=2.147;QD=15.61;ReadPosRankSum=3.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:9,19:28:99:467,0,249
16    55854455    rs2307235    A    C    454.93    MQFilter40    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.99;MQ0=4;MQRankSum=0.417;QD=16.25;ReadPosRankSum=3.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:9,19:28:99:485,0,241
16    55854514    rs8192940    G    A    191.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:224,18,0
16    55857396    rs150951789    A    C    218.74    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.14;MQ0=1;MQRankSum=1.805;QD=11.51;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:8,11:19:99:249,0,190
16    55862590    rs79821028    G    T    38.39    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.45;MQ0=0;MQRankSum=-2.976;QD=2.13;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:11,7:18:68.39:68,0,377
16    55862605    rs3848300    G    A    596.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.2;MQ0=0;QD=28.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    1/1:0,21:21:48.14:630,48,0
16    55862647    rs62028646    A    G    348.31    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.217;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=52.96;MQ0=0;MQRankSum=-1.75;QD=9.41;ReadPosRankSum=0.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:22,15:37:99:378,0,570
16    55862691    rs62028647    G    A    562.38    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=2.941;DB;DP=60;Dels=0.0;FS=1.084;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=1;MQRankSum=-1.546;QD=9.37;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=S82L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55862679_55862883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361503    GT:AD:DP:GQ:PL    0/1:37,23:60:99:592,0,1018
16    55862717    rs76828834    T    C    512.54    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.193;DB;DP=67;Dels=0.0;FS=3.633;HRun=0;HaplotypeScore=0.0;MQ=54.15;MQ0=1;MQRankSum=-2.003;QD=7.65;ReadPosRankSum=-1.058;SNPEFF_AMINO_ACID_CHANGE=P73;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55862679_55862883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361503    GT:AD:DP:GQ:PL    0/1:38,29:67:99:543,0,1149
16    55862720    rs74019278    T    C    584.86    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.899;DB;DP=68;Dels=0.0;FS=5.039;HRun=0;HaplotypeScore=0.0;MQ=53.63;MQ0=1;MQRankSum=-2.3;QD=8.6;ReadPosRankSum=-1.563;SNPEFF_AMINO_ACID_CHANGE=E72;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55862679_55862883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361503    GT:AD:DP:GQ:PL    0/1:37,31:68:99:615,0,1098
16    55862762    rs3826194    C    G    505.16    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=3.436;DB;DP=60;Dels=0.0;FS=3.9;HRun=2;HaplotypeScore=0.9958;MQ=52.36;MQ0=1;MQRankSum=-4.28;QD=8.42;ReadPosRankSum=2.194;SNPEFF_AMINO_ACID_CHANGE=P58;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55862679_55862883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361503    GT:AD:DP:GQ:PL    0/1:34,26:60:99:535,0,960
16    55862791    rs114632091    T    C    358.39    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.178;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.01;MQ0=1;MQRankSum=-2.796;QD=8.53;ReadPosRankSum=-1.616;SNPEFF_AMINO_ACID_CHANGE=I49V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55862679_55862883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361503    GT:AD:DP:GQ:PL    0/1:22,20:42:99:388,0,642
16    55862824    rs3826192    C    T    192.18    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.892;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7608;MQ=54.41;MQ0=1;MQRankSum=-1.509;QD=5.65;ReadPosRankSum=-0.168;SNPEFF_AMINO_ACID_CHANGE=V38I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55862679_55862883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361503    GT:AD:DP:GQ:PL    0/1:24,10:34:99:222,0,677
16    55862836    rs3826191    G    A    98.05    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=26;Dels=0.0;FS=3.51;HRun=1;HaplotypeScore=0.0;MQ=54.7;MQ0=1;MQRankSum=-1.877;QD=3.77;ReadPosRankSum=-0.223;SNPEFF_AMINO_ACID_CHANGE=L34;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55862679_55862883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361503    GT:AD:DP:GQ:PL    0/1:19,7:26:99:128,0,628
16    55862883    rs3826190    C    A    37.10    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.142;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.14;MQ0=0;MQRankSum=-1.181;QD=1.85;ReadPosRankSum=-0.331;SNPEFF_AMINO_ACID_CHANGE=G18V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55862679_55862883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361503    GT:AD:DP:GQ:PL    0/1:16,4:20:67.09:67,0,538
16    55866894    rs56278207    T    TA    1974.35    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.039;DB;DP=95;FS=0.0;HRun=1;HaplotypeScore=215.8955;IndelType=I;MQ=59.43;MQ0=0;MQRankSum=-0.02;QD=20.57;ReadPosRankSum=-2.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360526    GT:AD:DP:GQ:PL    0/1:47,49:95:99:2013,0,1566
16    55883412    rs2110815    G    T    371.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.663;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.059;QD=10.31;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    0/1:21,15:36:99:401,0,702
16    55883618    rs2160276    T    C    1573.28    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.35;DB;DP=137;Dels=0.0;FS=1.499;HRun=1;HaplotypeScore=1.8455;MQ=59.83;MQ0=0;MQRankSum=0.393;QD=11.48;ReadPosRankSum=0.89;SNPEFF_AMINO_ACID_CHANGE=P227;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55883536_55883685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541580    GT:AD:DP:GQ:PL    0/1:73,64:137:99:1603,0,2219
16    55883761    rs7186875    A    C    449.34    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=14.04;ReadPosRankSum=-1.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    0/1:13,19:32:99:479,0,388
16    55883883    rs4309387    G    A    117.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.75;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    0/1:3,4:7:99:147,0,104
16    55886576    rs4783913    G    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:72,0,34
16    55886662    rs4783914    G    A    184.31    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=16.76;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    0/1:3,8:11:94.68:214,0,95
16    55886715    rs4784596    C    G    1016.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1049,78,0
16    55903309    rs6499797    C    T    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536025    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
16    55905389    rs4784601    A    G    75.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
16    55905636    rs3859108    A    G    412.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=H106;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_55905537_55905675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:446,33,0
16    55907600    rs6416763    C    T    176.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CES5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290567    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:209,15,0
16    56226638    .    G    GCACA    399.83    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DP=20;FS=0.0;HRun=0;HaplotypeScore=100.4291;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=0.471;QD=19.99;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262493    GT:AD:DP:GQ:PL    0/1:13,7:20:99:439,0,230
16    56362725    rs2241952    T    C    483.41    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=15.59;ReadPosRankSum=2.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262493    GT:AD:DP:GQ:PL    0/1:13,18:31:99:513,0,313
16    56362881    rs4784654    A    C    67.92    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.98;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262493    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:98,0,28
16    56368689    rs1065375    C    T    678.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.861;DB;DP=39;Dels=0.0;FS=3.211;HRun=0;HaplotypeScore=0.9987;MQ=59.41;MQ0=0;MQRankSum=-0.256;QD=17.4;ReadPosRankSum=0.324;SNPEFF_AMINO_ACID_CHANGE=T171;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56368641_56368769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262493    GT:AD:DP:GQ:PL    0/1:13,26:39:99:709,0,296
16    56368886    rs2251025    C    T    78.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262493    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
16    56375099    rs9922360    A    G    44.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.12;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262493    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:74,0,34
16    56377748    rs1799917    A    G    351.33    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.016;DB;DP=23;Dels=0.0;FS=4.904;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.217;QD=15.28;ReadPosRankSum=-0.403;SNPEFF_AMINO_ACID_CHANGE=K317;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56377675_56378096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262494    GT:AD:DP:GQ:PL    0/1:10,13:23:99:381,0,349
16    56396486    rs4924    C    T    1252.34    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=1.486;DB;DP=90;Dels=0.0;FS=5.62;HRun=0;HaplotypeScore=0.8321;MQ=58.97;MQ0=0;MQRankSum=-0.609;QD=13.91;ReadPosRankSum=-0.251;SNPEFF_AMINO_ACID_CHANGE=V177I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56396337_56396528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMFR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314566    GT:AD:DP:GQ:PL    0/1:48,41:90:99:1282,0,1433
16    56401294    rs2241957    T    C    6395.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.894;MQ=59.5;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290649    GT:AD:DP:GQ:PL    1/1:0,182:183:99:6396,487,0
16    56401352    rs77132693    T    C    3409.23    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.026;DB;DP=250;DS;Dels=0.0;FS=11.464;HRun=0;HaplotypeScore=4.9821;MQ=59.82;MQ0=0;MQRankSum=-0.754;QD=13.64;ReadPosRankSum=-0.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290649    GT:AD:DP:GQ:PL    0/1:130,119:250:99:3409,0,4116
16    56436824    rs2440472    A    G    418.85    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.859;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.637;QD=14.44;ReadPosRankSum=-0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290649    GT:AD:DP:GQ:PL    0/1:14,15:29:99:449,0,473
16    56441862    rs2920704    A    G    705.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290649    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:738,60,0
16    56442066    rs4238787    C    T    212.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=15.19;ReadPosRankSum=-1.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290649    GT:AD:DP:GQ:PL    0/1:6,8:14:99:243,0,174
16    56468561    rs8056687    C    T    772.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.946;QD=35.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300291    GT:AD:DP:GQ:PL    1/1:1,21:22:31.85:806,32,0
16    56481955    rs79883699    T    C    185    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=14.23;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300291    GT:AD:DP:GQ:PL    0/1:6,7:13:99:215,0,210
16    56487006    rs74535849    G    C    77.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=12.91;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336111    GT:AD:DP:GQ:PL    0/1:2,4:6:69.72:107,0,70
16    56487445    rs8056171    C    G    30.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.07;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336111    GT:AD:DP:GQ:PL    0/1:4,2:6:60.39:60,0,135
16    56500132    rs34883368    C    T    363.26    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.759;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.615;QD=11.35;ReadPosRankSum=0.218;SNPEFF_AMINO_ACID_CHANGE=P173S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56500064_56500180;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFOD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336111    GT:AD:DP:GQ:PL    0/1:18,14:32:99:393,0,514
16    56500176    rs11544885    T    A    319.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.026;QD=12.76;ReadPosRankSum=1.137;SNPEFF_AMINO_ACID_CHANGE=I187;SNPEFF_CODON_CHANGE=atT/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56500064_56500180;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFOD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336111    GT:AD:DP:GQ:PL    0/1:15,10:25:99:349,0,394
16    56501806    rs2288055    C    T    397.41    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.208;DB;DP=34;Dels=0.0;FS=13.299;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.659;QD=11.69;ReadPosRankSum=0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336111    GT:AD:DP:GQ:PL    0/1:19,15:34:99:427,0,588
16    56519608    .    A    G    773.42    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.064;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.203;QD=10.89;ReadPosRankSum=-0.473;SNPEFF_AMINO_ACID_CHANGE=N651;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56519502_56519650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    0/1:43,28:71:99:803,0,1328
16    56535613    rs9929724    A    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
16    56536080    rs76163868    C    T    851.60    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.219;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=19.8;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    0/1:18,25:43:99:882,0,619
16    56536494    rs41280890    G    A    685.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.484;DB;DP=32;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.993;QD=21.42;ReadPosRankSum=-1.499;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    0/1:12,20:32:99:716,0,342
16    56539982    rs79900021    C    T    397.72    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.63;DB;DP=33;Dels=0.0;FS=5.188;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.486;QD=12.05;ReadPosRankSum=-0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    0/1:17,16:33:99:428,0,587
16    56540190    rs4784675    G    C    226.25    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=22.63;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    0/1:3,7:10:94.54:256,0,95
16    56545175    rs11373    T    C    1455.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=35.5;SNPEFF_AMINO_ACID_CHANGE=I123V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56545071_56545196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1489,108,0
16    56548501    rs4784677    C    T    2113.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_AMINO_ACID_CHANGE=S70N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56548365_56548592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2147,157,0
16    56553814    rs115078074    A    G    52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_56553658_56554008;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245157    GT:AD:DP:GQ:PL    0/1:4,3:7:81.99:82,0,136
16    56598904    rs2071005    G    A    225.42    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.337;QD=13.26;ReadPosRankSum=0.625;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219162    GT:AD:DP:GQ:PL    0/1:8,9:17:99:255,0,230
16    56599221    rs182221    C    G    370.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219162    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:404,30,0
16    56601720    rs666636    A    G    2077.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.15;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=Y30C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56601663_56601728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219162    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2110,157,0
16    56601722    rs666647    T    C    1834.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.12;MQ0=0;QD=29.59;SNPEFF_AMINO_ACID_CHANGE=W31R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56601663_56601728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219162    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1868,153,0
16    56659525    rs1610215    C    G    94.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.63;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330439    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:127,12,0
16    56660685    rs117777471    A    G    1146.34    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.95;DB;DP=118;Dels=0.0;FS=1.613;HRun=0;HaplotypeScore=3.0128;MQ=58.57;MQ0=0;MQRankSum=0.877;QD=9.71;ReadPosRankSum=0.097;SNPEFF_AMINO_ACID_CHANGE=K112;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56660378_56661024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330439    GT:AD:DP:GQ:PL    0/1:70,47:118:99:1176,0,2169
16    56666397    rs1604123    A    T    67.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.75;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444023    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:99,9,0
16    56666445    rs1846691    T    A    280.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444023    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:314,24,0
16    56666886    rs1827208    C    T    88.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379818    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
16    56667165    rs1827209    A    G    1702.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.884;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5442;MQ=58.9;MQ0=0;MQRankSum=1.591;QD=34.04;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379818    GT:AD:DP:GQ:PL    1/1:1,48:50:99:1735,135,0
16    56667282    rs1827210    C    A    4603.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=58.72;MQ0=0;QD=35.14;SNPEFF_AMINO_ACID_CHANGE=T20K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56667252_56667317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1M;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379818    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4604,337,0
16    56667854    rs2270837    A    G    980.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=39.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444023    GT:AD:DP:GQ:PL    1/1:0,25:25:75.24:1014,75,0
16    56670226    rs4094215    C    A    197.92    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.12;MQ0=0;MQRankSum=0.634;QD=9.9;ReadPosRankSum=0.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379818    GT:AD:DP:GQ:PL    0/1:13,7:20:99:228,0,476
16    56670667    rs4784701    T    G    467.62    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.838;DB;DP=45;Dels=0.0;FS=2.876;HRun=3;HaplotypeScore=0.8321;MQ=59.59;MQ0=0;MQRankSum=0.711;QD=10.39;ReadPosRankSum=1.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379818    GT:AD:DP:GQ:PL    0/1:25,20:45:99:498,0,882
16    56673143    rs11076160    A    G    1313.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444023    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1346,102,0
16    56673148    rs11076161    A    G    1329.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444023    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1362,108,0
16    56673227    rs11640851    C    A    993.74    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.172;DB;DP=82;Dels=0.0;FS=4.394;HRun=1;HaplotypeScore=1.8401;MQ=59.38;MQ0=0;MQRankSum=0.142;QD=12.12;ReadPosRankSum=0.142;SNPEFF_AMINO_ACID_CHANGE=T27N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56673176_56673241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290705    GT:AD:DP:GQ:PL    0/1:43,39:82:99:1024,0,1226
16    56673249    rs11647171    T    C    682.20    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.128;DB;DP=70;Dels=0.0;FS=3.482;HRun=0;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=-0.037;QD=9.75;ReadPosRankSum=-1.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026461.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444023    GT:AD:DP:GQ:PL    0/1:39,31:70:99:712,0,1126
16    56677634    rs57778164    C    T    376.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290705    GT:AD:DP:GQ:PL    1/1:0,15:15:30.09:409,30,0
16    56677663    rs72487916    T    C    217.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=9.89;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=16.69;ReadPosRankSum=1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290705    GT:AD:DP:GQ:PL    0/1:6,7:13:99:247,0,174
16    56677666    rs192491645    T    G    140.56    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=9.89;HRun=2;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=10.81;ReadPosRankSum=-2.074;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290705    GT:AD:DP:GQ:PL    0/1:7,6:13:99:171,0,219
16    56677754    rs60111035    G    A    90.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.31;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290705    GT:AD:DP:GQ:PL    0/1:4,4:8:99:120,0,139
16    56678025    rs66564161    G    A    973.98    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.145;DB;DP=63;Dels=0.0;FS=2.325;HRun=0;HaplotypeScore=1.9998;MQ=59.7;MQ0=0;MQRankSum=-0.159;QD=15.46;ReadPosRankSum=-0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290705    GT:AD:DP:GQ:PL    0/1:29,34:63:99:1004,0,912
16    56678865    rs8044719    T    G    140.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290705    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:174,15,0
16    56683134    rs8050217    T    C    105.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379816    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:138,12,0
16    56686002    rs2070838    G    C    297.63    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;MQRankSum=-0.254;QD=22.89;ReadPosRankSum=0.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379816    GT:AD:DP:GQ:PL    0/1:3,10:13:88.63:328,0,89
16    56686005    rs4619400    T    A    284.47    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.592;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.099;QD=21.88;ReadPosRankSum=0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379816    GT:AD:DP:GQ:PL    0/1:3,10:13:77.46:314,0,77
16    56686030    rs964372    C    G    107.73    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=17.95;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379816    GT:AD:DP:GQ:PL    0/1:1,5:6:20.21:138,0,20
16    56686470    rs12051311    C    T    2433.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.7887;MQ=59.7;MQ0=0;QD=31.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379816    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2467,190,0
16    56687031    rs35231457    AT    A    418.84    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=4.15;DB;DP=42;FS=0.0;HRun=11;HaplotypeScore=119.1597;IndelType=D;MQ=59.94;MQ0=0;MQRankSum=1.12;QD=9.74;ReadPosRankSum=-0.889;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1CP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379816    GT:AD:DP:GQ:PL    0/1:20,23:42:99:458,0,308
16    56696551    rs11647796    A    G    74.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334350    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
16    56696760    rs9937790    A    C    571.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334350    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:605,51,0
16    56696786    rs9939951    T    C    492.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334350    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:525,39,0
16    56696796    rs9926687    G    A    437.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334350    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:471,36,0
16    56700722    rs12315    G    T    438.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=1.677;QD=15.66;ReadPosRankSum=-0.988;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332374    GT:AD:DP:GQ:PL    0/1:14,14:28:99:468,0,476
16    56700907    rs72784736    G    A    954.33    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.191;DB;DP=114;Dels=0.0;FS=2.07;HRun=0;HaplotypeScore=3.6906;MQ=59.6;MQ0=0;MQRankSum=0.01;QD=8.37;ReadPosRankSum=-0.721;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379811    GT:AD:DP:GQ:PL    0/1:80,34:114:99:984,0,2406
16    56701294    rs2298847    T    A    809.70    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.602;DB;DP=72;Dels=0.0;FS=2.166;HRun=1;HaplotypeScore=3.4152;MQ=59.68;MQ0=0;MQRankSum=-0.988;QD=11.25;ReadPosRankSum=-1.07;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1G;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000379811    GT:AD:DP:GQ:PL    0/1:42,30:72:99:840,0,1297
16    56702000    rs904770    T    C    187.36    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.635;QD=9.86;ReadPosRankSum=-0.847;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379811    GT:AD:DP:GQ:PL    0/1:9,10:19:99:217,0,306
16    56704217    rs2062546    T    A    42.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=14.1;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332374    GT:AD:DP:GQ:PL    0/1:1,2:3:20.60:72,0,21
16    56704683    rs72784739    A    G    134.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=16;Dels=0.0;FS=2.447;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.103;QD=8.4;ReadPosRankSum=-0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332374    GT:AD:DP:GQ:PL    0/1:8,8:16:99:164,0,282
16    56704994    .    C    CT    187.66    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DP=9;FS=0.0;HRun=7;HaplotypeScore=28.5882;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=20.85;ReadPosRankSum=-1.666;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379811    GT:AD:DP:GQ:PL    0/1:2,7:9:30.89:227,0,31
16    56710323    rs113968244    C    CT    249.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DB;DP=14;FS=0.0;HRun=9;HaplotypeScore=81.7473;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=1.393;QD=17.82;ReadPosRankSum=1.393;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:5,9:14:21.85:291,22,0
16    56716982    rs2301234    T    G    837.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394485    GT:AD:DP:GQ:PL    1/1:0,24:24:66.19:871,66,0
16    56717596    rs8051405    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394485    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    56718116    rs150248797    T    C    280.77    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-1.059;QD=16.52;ReadPosRankSum=1.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MT1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394485    GT:AD:DP:GQ:PL    0/1:7,10:17:99:311,0,233
16    56839439    rs1803870    C    T    520.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.628;DB;DP=60;Dels=0.0;FS=2.17;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.072;QD=8.67;ReadPosRankSum=-2.43;SNPEFF_AMINO_ACID_CHANGE=Y128;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56839416_56839544;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    0/1:36,24:60:99:550,0,1031
16    56855496    rs2118017    C    G    2567.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.04;MQ0=0;QD=35.66;SNPEFF_AMINO_ACID_CHANGE=L215;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56855416_56855505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2600,190,0
16    56855549    rs140136028    TC    T    691.05    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=42;FS=0.0;HRun=2;HaplotypeScore=222.3168;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=-0.164;QD=16.45;ReadPosRankSum=0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    0/1:20,22:42:99:730,0,764
16    56863215    rs76940876    C    T    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.59;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,94
16    56864398    rs1561140    C    T    1722.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1756,138,0
16    56864618    rs4461062    C    T    450.97    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=3.979;DB;DP=39;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.864;QD=11.56;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    0/1:22,17:39:99:481,0,600
16    56866054    .    A    AT    138.57    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DP=18;FS=1.987;HRun=6;HaplotypeScore=44.647;IndelType=I;MQ=60.6;MQ0=0;MQRankSum=-0.054;QD=7.7;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    0/1:12,6:18:99:178,0,258
16    56866196    rs2241770    T    C    645.72    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.557;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.876;QD=14.35;ReadPosRankSum=1.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    0/1:21,24:45:99:676,0,665
16    56868700    rs1347591    A    G    352.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=30;Dels=0.0;FS=3.873;HRun=0;HaplotypeScore=0.8321;MQ=58.75;MQ0=0;MQRankSum=1.327;QD=11.75;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    0/1:15,15:30:99:382,0,510
16    56872824    rs3764266    G    A    989.76    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6902;MQ=59.38;MQ0=0;MQRankSum=0.476;QD=13.2;ReadPosRankSum=0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308159    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1020,0,1166
16    56899006    rs4784733    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    56900931    rs13306673    C    T    419.79    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.349;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4558;MQ=57.48;MQ0=0;MQRankSum=0.783;QD=14.99;ReadPosRankSum=-0.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:13,15:28:99:450,0,301
16    56904587    rs1529927    C    G    643.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_AMINO_ACID_CHANGE=A263G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56904538_56904648;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438926    GT:AD:DP:GQ:PL    1/1:0,21:21:54.14:676,54,0
16    56912903    rs2289119    C    T    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
16    56913419    rs3816119    C    T    263.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-1.671;QD=12.57;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:9,12:21:99:294,0,278
16    56917953    rs2304483    T    C    352.74    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.626;DB;DP=25;Dels=0.0;FS=1.721;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=14.11;ReadPosRankSum=0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:12,13:25:99:383,0,351
16    56920969    rs5803    C    T    629.96    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.487;DB;DP=37;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.192;QD=17.03;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=A713;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56920865_56921005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438926    GT:AD:DP:GQ:PL    0/1:16,21:37:99:660,0,428
16    56924160    rs3764264    C    T    280.77    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.346;DB;DP=29;Dels=0.0;FS=3.646;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=9.68;ReadPosRankSum=-0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:16,13:29:99:311,0,546
16    56925894    rs2304482    C    T    513.73    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.435;DB;DP=27;Dels=0.0;FS=5.63;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-1.13;QD=19.03;ReadPosRankSum=-0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:10,17:27:99:544,0,341
16    56926176    rs12443855    G    A    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,151
16    56926793    rs2278490    C    T    96.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:2,4:6:65.46:127,0,65
16    56926828    rs2278489    T    C    146.72    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=14.67;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    0/1:4,6:10:99:177,0,101
16    56928277    rs13306678    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    56928519    rs5804    C    T    120.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.466;QD=10.0;ReadPosRankSum=-0.717;SNPEFF_AMINO_ACID_CHANGE=G874;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_56928443_56928554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438926    GT:AD:DP:GQ:PL    0/1:7,5:12:99:150,0,196
16    56933315    rs9922270    T    C    255.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262502    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
16    56966011    rs37025    G    A    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HERPUD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300302    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    56994990    rs17245715    C    T    35.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:3,2:5:65.61:66,0,97
16    56995038    rs4783962    T    C    40.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:70,0,70
16    56995236    rs1800775    C    A    110.82    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=13.85;ReadPosRankSum=-1.221;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:3,5:8:99:141,0,102
16    56996158    rs3816117    T    C    89.94    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:1,5:6:26.72:120,0,27
16    56996211    rs711752    G    A    103.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.72;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:3,4:7:93.91:133,0,94
16    56996288    rs708272    G    A    116.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.94;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:4,5:9:99:146,0,133
16    57003723    rs891141    G    T    194.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:228,18,0
16    57003977    rs891142    T    C    233.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:267,21,0
16    57003980    rs891143    T    C    226.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:259,21,0
16    57004889    rs7205804    G    A    135.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=14;Dels=0.0;FS=3.256;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.194;QD=9.69;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:8,6:14:99:166,0,214
16    57005301    rs1532625    C    T    1099.46    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=4.217;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7885;MQ=58.97;MQ0=0;MQRankSum=0.664;QD=12.22;ReadPosRankSum=-0.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:50,39:90:99:1129,0,1334
16    57005479    rs1532624    C    A    67.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=11.27;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:3,3:6:97.61:98,0,100
16    57007451    rs289714    G    A    513.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:546,42,0
16    57014875    rs4784745    A    G    108.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=10.87;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:5,5:10:99:139,0,178
16    57015463    rs7195984    G    A    518.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:551,42,0
16    57016092    rs5882    G    A    385.18    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.079;DB;DP=24;Dels=0.0;FS=1.685;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=16.05;ReadPosRankSum=-1.552;SNPEFF_AMINO_ACID_CHANGE=V362I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57016077_57016149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379780    GT:AD:DP:GQ:PL    0/1:10,14:24:99:415,0,306
16    57017474    rs289741    G    A    626.38    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=2.449;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5731;MQ=59.23;MQ0=0;MQRankSum=-0.234;QD=10.44;ReadPosRankSum=2.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:35,24:60:99:656,0,915
16    57017662    rs1801706    G    A    220.80    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.181;QD=10.04;ReadPosRankSum=-0.253;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    0/1:13,9:22:99:251,0,462
16    57017762    rs289742    C    G    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CETP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200676    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
16    57057654    rs1672865    A    G    166.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538059    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
16    57059427    rs74439742    C    T    1412.38    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=3.276;DB;DP=92;Dels=0.0;FS=4.005;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=15.35;ReadPosRankSum=-0.189;SNPEFF_AMINO_ACID_CHANGE=P191L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57059280_57060930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262510    GT:AD:DP:GQ:PL    0/1:41,51:92:99:1442,0,1163
16    57062177    rs1684576    T    A    3036.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262510    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3069,232,0
16    57065199    rs72780004    G    A    241.79    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=17.27;ReadPosRankSum=1.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536231    GT:AD:DP:GQ:PL    0/1:6,8:14:99:272,0,187
16    57067595    rs58124158    A    T    228.59    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DB;DP=25;Dels=0.0;FS=8.541;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.252;QD=9.14;ReadPosRankSum=0.786;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536231    GT:AD:DP:GQ:PL    0/1:17,8:25:99:259,0,544
16    57071113    rs78176773    T    C    1344.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.6;MQ0=0;QD=28.6;SNPEFF_AMINO_ACID_CHANGE=S205;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57071107_57071196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543030    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1377,114,0
16    57071114    rs1672867    A    G    1208.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.6;MQ0=0;QD=25.71;SNPEFF_AMINO_ACID_CHANGE=N206D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57071107_57071196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543030    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1241,108,0
16    57071232    rs1684580    C    G    824.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262510    GT:AD:DP:GQ:PL    1/1:0,29:29:69.21:858,69,0
16    57071335    rs1651670    G    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262510    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
16    57073683    rs864750    G    C    2725.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5194;MQ=59.21;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262510    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2759,202,0
16    57074451    rs289726    T    C    302.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262510    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:335,24,0
16    57085762    rs7194740    G    A    84.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539881    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
16    57095842    rs3833830    AAAAG    A    837.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=109.2389;IndelType=D;MQ=59.94;MQ0=0;QD=38.06;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_57095772_57095878;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000543030    GT:AD:DP:GQ:PL    1/1:4,18:22:54.18:879,54,0
16    57111444    rs27726    C    T    144.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544189    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:177,15,0
16    57111825    rs27392    T    C    844.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544189    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:878,66,0
16    57113229    rs42221    A    G    994.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544189    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1027,78,0
16    57115274    rs154043    T    C    736.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544189    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:769,57,0
16    57116287    rs27195    A    G    778.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262510    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:812,60,0
16    57116514    rs27194    T    A    319.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NLRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534927    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:352,27,0
16    57144920    rs8053682    T    A    655.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9867;MQ=57.93;MQ0=0;MQRankSum=1.456;QD=26.22;ReadPosRankSum=0.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290776    GT:AD:DP:GQ:PL    1/1:1,24:25:46.43:689,46,0
16    57144921    rs8047463    G    C    640.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.3;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9867;MQ=57.85;MQ0=0;MQRankSum=1.445;QD=26.67;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290776    GT:AD:DP:GQ:PL    1/1:1,23:24:40.57:673,41,0
16    57149174    rs66736014    C    T    108.21    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.64;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290776    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:138,0,28
16    57157206    rs2305696    C    T    366.18    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.614;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=15.92;ReadPosRankSum=-1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290776    GT:AD:DP:GQ:PL    0/1:9,14:23:99:396,0,305
16    57170936    rs72778715    G    C    95.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290776    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:128,9,0
16    57171233    rs2305693    C    G    593.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290776    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:626,48,0
16    57197745    rs62037356    G    T    4115.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=59.44;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM192A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309137    GT:AD:DP:GQ:PL    1/1:0,124:124:99:4116,310,0
16    57206637    rs3751702    G    A    604.48    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=4.108;DB;DP=31;Dels=0.0;FS=2.783;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.053;QD=19.5;ReadPosRankSum=-0.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM192A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309137    GT:AD:DP:GQ:PL    0/1:11,20:31:99:634,0,293
16    57206662    rs55680142    T    C    624.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.144;DB;DP=42;Dels=0.0;FS=5.885;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.617;QD=14.88;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM192A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309137    GT:AD:DP:GQ:PL    0/1:18,24:42:99:655,0,599
16    57249981    rs11391063    A    AT    140.84    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.662;DB;DP=42;FS=0.0;HRun=18;HaplotypeScore=330.7339;IndelType=I;MQ=49.83;MQ0=0;MQRankSum=-0.793;QD=3.35;ReadPosRankSum=-0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPRY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394420    GT:AD:DP:GQ:PL    0/1:24,11:42:99:180,0,102
16    57255363    rs7206038    T    C    1457.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPRY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394420    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1490,120,0
16    57261146    rs11643790    A    C    169.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSPRY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394420    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
16    57392733    rs4359426    A    C    2149.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.23;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=D2A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57392684_57392801;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219235    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2182,166,0
16    57415810    rs62037085    C    T    150.33    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=21.48;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CX3CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006053    GT:AD:DP:GQ:PL    0/1:2,5:7:62.92:180,0,63
16    57417134    rs4151117    G    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CX3CL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006053    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
16    57466539    rs639132    A    G    592.03    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.191;QD=19.1;ReadPosRankSum=-0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIAPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394391    GT:AD:DP:GQ:PL    0/1:12,19:31:99:622,0,390
16    57466549    rs667380    C    T    418.51    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.529;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=19.02;ReadPosRankSum=-0.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIAPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394391    GT:AD:DP:GQ:PL    0/1:7,15:22:99:449,0,232
16    57466602    rs1273578    C    A    274.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIAPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394391    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:308,24,0
16    57474971    rs588430    C    T    60.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=10.14;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIAPIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394391    GT:AD:DP:GQ:PL    0/1:3,3:6:90.85:91,0,96
16    57486613    rs686402    C    T    448.40    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=59.42;MQ0=0;MQRankSum=1.563;QD=11.21;ReadPosRankSum=0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262507    GT:AD:DP:GQ:PL    0/1:22,18:40:99:478,0,724
16    57490721    rs223865    G    A    210.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262507    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
16    57493802    rs36209698    TCATTTG    T    711.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=85.5557;IndelType=D;MQ=37.54;MQ0=0;QD=59.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262507    GT:AD:DP:GQ:PL    1/1:1,11:12:33.11:754,33,0
16    57496931    rs223837    G    C    369.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.023;DB;DP=28;Dels=0.0;FS=3.785;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=13.2;ReadPosRankSum=0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262507    GT:AD:DP:GQ:PL    0/1:16,12:28:99:399,0,519
16    57499841    rs223839    A    G    694.29    PASS    AB=0.258;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.46;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.196;QD=22.4;ReadPosRankSum=-0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COQ9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262507    GT:AD:DP:GQ:PL    0/1:8,23:31:99:724,0,202
16    57499902    rs4937    T    C    1393.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9667;MQ=58.84;MQ0=0;QD=31.67;SNPEFF_AMINO_ACID_CHANGE=V58;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57499865_57499933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219252    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1427,111,0
16    57503213    rs601194    C    T    774.28    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=1.326;DB;DP=53;Dels=0.0;FS=4.409;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.792;QD=14.61;ReadPosRankSum=-0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340099    GT:AD:DP:GQ:PL    0/1:26,27:53:99:804,0,705
16    57503773    rs223874    G    A    1043.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=38.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340099    GT:AD:DP:GQ:PL    1/1:0,27:27:81.26:1077,81,0
16    57507777    rs11458669    T    TC    408.07    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=33;FS=0.0;HRun=6;HaplotypeScore=115.2;IndelType=I;MQ=60.33;MQ0=0;MQRankSum=-0.558;QD=12.37;ReadPosRankSum=-0.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219252    GT:AD:DP:GQ:PL    0/1:18,15:33:99:447,0,316
16    57507991    rs75862393    C    T    252.26    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.652;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3639;MQ=60.0;MQ0=0;MQRankSum=0.15;QD=16.82;ReadPosRankSum=0.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219252    GT:AD:DP:GQ:PL    0/1:7,8:15:99:282,0,238
16    57508960    rs477025    T    C    617.48    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=41;Dels=0.0;FS=1.684;HRun=2;HaplotypeScore=0.8667;MQ=58.98;MQ0=0;MQRankSum=1.116;QD=15.06;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219252    GT:AD:DP:GQ:PL    0/1:18,23:41:99:647,0,584
16    57509164    rs223877    A    G    2501.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5644;MQ=58.9;MQ0=0;QD=31.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219252    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2535,196,0
16    57550331    rs74901418    C    T    246.43    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.222;QD=12.97;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=Q431;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57550205_57550375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258214    GT:AD:DP:GQ:PL    0/1:10,9:19:99:276,0,287
16    57551892    rs28536001    C    T    371.61    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=14.86;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258214    GT:AD:DP:GQ:PL    0/1:13,12:25:99:402,0,389
16    57551966    rs28649020    A    T    974.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.637;DB;DP=68;Dels=0.0;FS=3.492;HRun=0;HaplotypeScore=2.6287;MQ=60.0;MQ0=0;MQRankSum=-0.975;QD=14.33;ReadPosRankSum=0.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258214    GT:AD:DP:GQ:PL    0/1:34,34:68:99:1004,0,888
16    57552088    rs28756858    T    C    1925.63    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.235;DB;DP=124;Dels=0.0;FS=3.936;HRun=0;HaplotypeScore=2.3893;MQ=59.25;MQ0=0;MQRankSum=0.461;QD=15.53;ReadPosRankSum=-0.568;SNPEFF_AMINO_ACID_CHANGE=A380;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57551980_57552189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258214    GT:AD:DP:GQ:PL    0/1:51,72:124:99:1956,0,1223
16    57555076    rs28446687    C    T    929.20    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.111;DB;DP=50;Dels=0.0;FS=7.039;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.03;QD=18.58;ReadPosRankSum=0.939;SNPEFF_AMINO_ACID_CHANGE=A275;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57554980_57555088;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258214    GT:AD:DP:GQ:PL    0/1:22,28:50:99:959,0,568
16    57562804    rs12935069    G    A    381.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.25;SNPEFF_AMINO_ACID_CHANGE=R96W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57562505_57563236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258214    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:415,30,0
16    57595999    rs1004363    A    G    305.56    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.716;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.285;QD=9.26;ReadPosRankSum=1.007;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349457    GT:AD:DP:GQ:PL    0/1:18,14:33:99:336,0,517
16    57596111    .    C    T    345.68    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.39;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.592;QD=11.92;ReadPosRankSum=-0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340339    GT:AD:DP:GQ:PL    0/1:16,13:29:99:376,0,411
16    57597597    rs9921158    C    G    30.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.04;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340339    GT:AD:DP:GQ:PL    0/1:3,3:6:60.21:60,0,110
16    57601792    rs9937918    C    T    257.83    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8154;MQ=60.0;MQ0=0;MQRankSum=-0.463;QD=10.74;ReadPosRankSum=0.869;SNPEFF_AMINO_ACID_CHANGE=R282;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57601768_57602036;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR114;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340339    GT:AD:DP:GQ:PL    0/1:13,11:24:99:288,0,389
16    57625470    rs11646739    C    T    243.76    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9891;MQ=57.23;MQ0=0;MQRankSum=-0.927;QD=14.34;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349457    GT:AD:DP:GQ:PL    0/1:7,10:17:99:274,0,213
16    57687714    rs8054093    A    C    102.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.27;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379694    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,209
16    57689028    rs7202126    C    T    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379694    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
16    57689230    rs142256187    GGT    G    555.11    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=4.229;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=203.6427;IndelType=D;MQ=58.39;MQ0=1;MQRankSum=-0.492;QD=12.07;ReadPosRankSum=-1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379694    GT:AD:DP:GQ:PL    0/1:25,20:45:99:594,0,813
16    57689385    rs1801257    C    G    502.67    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.191;DB;DP=36;Dels=0.0;FS=8.008;HRun=4;HaplotypeScore=0.8321;MQ=59.36;MQ0=0;MQRankSum=0.466;QD=13.96;ReadPosRankSum=0.811;SNPEFF_AMINO_ACID_CHANGE=S106R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57689311_57689442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544297    GT:AD:DP:GQ:PL    0/1:16,20:36:99:533,0,467
16    57689805    rs1801255    A    C    1427.83    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.157;DB;DP=97;Dels=0.0;FS=2.674;HRun=0;HaplotypeScore=0.7887;MQ=59.28;MQ0=0;MQRankSum=0.463;QD=14.72;ReadPosRankSum=-0.117;SNPEFF_AMINO_ACID_CHANGE=Q131H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57689788_57689904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544297    GT:AD:DP:GQ:PL    0/1:45,52:97:99:1458,0,1385
16    57689883    rs1376041    T    C    2734.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.46;MQ0=0;QD=32.17;SNPEFF_AMINO_ACID_CHANGE=T157;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57689788_57689904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544297    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2768,220,0
16    57690606    rs11866912    C    A    437.72    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DB;DP=23;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.643;QD=19.03;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379694    GT:AD:DP:GQ:PL    0/1:10,13:23:99:468,0,329
16    57691265    rs2305309    C    A    615.02    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.094;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=59.51;MQ0=0;MQRankSum=-2.626;QD=13.09;ReadPosRankSum=2.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379694    GT:AD:DP:GQ:PL    0/1:27,20:47:99:645,0,787
16    57693247    rs60907901    G    A    302.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.564;QD=14.43;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379694    GT:AD:DP:GQ:PL    0/1:9,12:21:99:333,0,172
16    57697532    rs10852554    T    G    465.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327655    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:499,39,0
16    57697568    rs10852555    C    A    54.50    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.45;ReadPosRankSum=-0.296;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327655    GT:AD:DP:GQ:PL    0/1:7,3:10:84.49:84,0,208
16    57707249    rs73552781    C    T    214.23    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=0.68;DB;DP=40;Dels=0.0;FS=3.4;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=5.36;ReadPosRankSum=0.13;SNPEFF_AMINO_ACID_CHANGE=T25;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57707233_57707380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR97;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333493    GT:AD:DP:GQ:PL    0/1:31,9:40:99:244,0,862
16    57710093    rs12596635    C    G    906.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327655    GT:AD:DP:GQ:PL    1/1:0,31:31:81.21:940,81,0
16    57735900    rs7196016    G    C    625.15    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.798;DB;DP=50;Dels=0.0;FS=8.146;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=-0.136;QD=12.5;ReadPosRankSum=0.876;SNPEFF_AMINO_ACID_CHANGE=C186S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57735848_57736042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC135;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360716    GT:AD:DP:GQ:PL    0/1:27,23:50:99:655,0,818
16    57739041    rs34851280    A    G    63.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336825    GT:AD:DP:GQ:PL    0/1:2,3:5:27.28:94,0,27
16    57741612    rs2122486    G    C    171.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.443;DB;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=9.51;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336825    GT:AD:DP:GQ:PL    0/1:10,8:18:99:201,0,361
16    57756643    rs3809611    C    T    654.40    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.933;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5628;MQ=59.64;MQ0=0;MQRankSum=-0.606;QD=10.22;ReadPosRankSum=-1.177;SNPEFF_AMINO_ACID_CHANGE=P368L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57756625_57756753;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC135;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336825    GT:AD:DP:GQ:PL    0/1:36,26:64:99:684,0,1050
16    57762401    rs2923147    T    C    478.83    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.05;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.01;MQ0=0;MQRankSum=1.345;QD=10.19;ReadPosRankSum=-1.676;SNPEFF_AMINO_ACID_CHANGE=C701R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57762302_57762496;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC135;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336825    GT:AD:DP:GQ:PL    0/1:26,21:47:99:509,0,817
16    57775372    rs2967150    A    G    117.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379661    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
16    57778488    rs2967152    A    G    998.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379661    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1032,75,0
16    57778550    rs2967153    C    G    188.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379661    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:222,18,0
16    57784901    rs142208582    G    A    333.42    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.995;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.121;QD=11.91;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379661    GT:AD:DP:GQ:PL    0/1:15,13:28:99:363,0,449
16    57786711    rs2965798    C    T    533.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=D242;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57786690_57786840;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379661    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:567,42,0
16    57794888    rs2965799    A    T    211.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=23.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379661    GT:AD:DP:GQ:PL    1/1:0,8:9:18.06:245,18,0
16    57795394    rs2967172    G    A    1101.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=57.73;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=D459;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57795325_57795448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543930    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1134,84,0
16    57797913    rs11649013    C    T    112.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379655    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:145,12,0
16    57803911    rs3803590    A    G    733.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379655    GT:AD:DP:GQ:PL    1/1:0,23:23:60.15:766,60,0
16    57805048    rs2967166    A    G    511.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379655    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:545,42,0
16    57805078    rs2965790    C    T    661.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379655    GT:AD:DP:GQ:PL    1/1:0,21:21:57.14:694,57,0
16    57805176    rs2967165    A    G    2151.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=L131;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57805110_57805349;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540079    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2185,169,0
16    57806030    rs2965789    A    G    1146.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIFC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379655    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1180,90,0
16    57921556    rs2033249    G    A    131.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
16    57921752    rs11076207    A    G    656.77    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.129;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=11.94;ReadPosRankSum=0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    0/1:26,29:55:99:687,0,850
16    57935085    rs190319    T    C    232.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:266,21,0
16    57937788    rs2303785    T    C    345.70    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=18.19;ReadPosRankSum=-1.986;SNPEFF_AMINO_ACID_CHANGE=K911R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57937726_57937885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    0/1:7,12:19:99:376,0,238
16    57937856    rs413562    G    T    289.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.26;SNPEFF_AMINO_ACID_CHANGE=A888;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57937726_57937885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,10:13:24.08:322,24,0
16    57937895    rs437920    G    A    224.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:257,21,0
16    57950178    rs440565    G    C    824.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:858,66,0
16    57950270    rs4784871    C    T    171.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
16    57951394    rs3991715    T    G    1018.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1052,81,0
16    57954268    rs166000    A    G    1503.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1536,117,0
16    57957138    rs247065    G    C    251.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:285,24,0
16    57973068    rs17821436    T    C    70.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=23.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
16    57974240    rs2303778    G    A    161.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
16    57983037    rs152141    T    G    360.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,15:15:33.08:394,33,0
16    57984483    rs152143    G    A    611.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;QD=27.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311183    GT:AD:DP:GQ:PL    1/1:0,22:22:48.15:645,48,0
16    57991123    rs34759686    GC    G    216.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=6;HaplotypeScore=25.8621;IndelType=D;MQ=60.0;MQ0=0;QD=24.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:1,8:9:24.06:258,24,0
16    57991317    rs503686    C    T    628.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,22:22:51.15:661,51,0
16    57992424    rs78224588    G    A    148.41    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.55;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,102
16    57992499    rs73545176    C    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    57994235    rs2405011    C    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    57996932    rs17821448    G    A    351.19    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=39;Dels=0.0;FS=16.026;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.192;QD=9.0;ReadPosRankSum=-1.7;SNPEFF_AMINO_ACID_CHANGE=G109;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57996878_57996968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    0/1:23,16:39:99:381,0,597
16    57996960    rs13336595    C    T    958.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=59.23;MQ0=0;MQRankSum=-1.617;QD=31.94;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=R100H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_57996878_57996968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:1,29:30:75.24:991,75,0
16    57998345    rs3859043    C    T    901.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    1/1:0,29:29:72.22:934,72,0
16    57998543    rs75649887    A    G    70.81    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.85;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251102    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,176
16    58019253    rs2304486    G    C    136.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=15.18;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290871    GT:AD:DP:GQ:PL    0/1:3,6:9:93.58:167,0,94
16    58019396    rs9934227    G    A    1130.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=34.26;SNPEFF_AMINO_ACID_CHANGE=S233N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58019386_58019450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEPP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441824    GT:AD:DP:GQ:PL    1/1:1,32:33:87.28:1164,87,0
16    58021395    rs2241771    A    C    67.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.57;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290871    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:100,9,0
16    58072153    rs2241774    C    T    484    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.047;DB;DP=45;Dels=0.0;FS=1.281;HRun=1;HaplotypeScore=1.9863;MQ=57.39;MQ0=0;MQRankSum=-0.122;QD=10.76;ReadPosRankSum=0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219271    GT:AD:DP:GQ:PL    0/1:27,18:45:99:514,0,618
16    58074210    rs2304488    A    G    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.36;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219271    GT:AD:DP:GQ:PL    0/1:2,2:4:71.42:71,0,73
16    58076422    rs2118018    A    G    77.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.95;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219271    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,110
16    58079165    rs3743563    G    A    76.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=12.8;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=G609R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58078911_58080805;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219271    GT:AD:DP:GQ:PL    0/1:2,4:6:56.18:107,0,56
16    58296040    rs11076235    G    C    95.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:128,9,0
16    58296047    rs11076236    C    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
16    58296172    rs11076237    C    T    515.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:548,42,0
16    58296542    rs9923694    T    C    794.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:828,66,0
16    58296545    rs3815802    G    A    837.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:870,66,0
16    58301187    rs7197565    C    A    195.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:228,18,0
16    58313566    rs6499945    T    G    822.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=29.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219301    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:855,69,0
16    58313578    rs111791754    CT    C    584.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=12;HaplotypeScore=191.368;IndelType=D;MQ=59.18;MQ0=0;QD=19.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219301    GT:AD:DP:GQ:PL    1/1:2,28:30:80.68:627,81,0
16    58313806    rs4784915    C    A    470.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219301    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:503,36,0
16    58313948    rs17241091    G    A    95.35    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=13.62;ReadPosRankSum=0.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    0/1:3,4:7:96.05:125,0,96
16    58318604    rs3815803    T    C    835.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=S182G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58318494_58318625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219301    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:869,66,0
16    58318721    rs11313996    AT    A    70.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=15;HaplotypeScore=45.575;IndelType=D;MQ=56.04;MQ0=0;QD=5.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    1/1:6,6:12:17.60:112,18,0
16    58320211    rs4784916    T    C    584.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC113;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219299    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:617,51,0
16    58327646    rs2288012    A    G    330.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=Y25;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58327636_58327726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219301    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:363,27,0
16    58528812    rs34720527    G    A    191.44    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=18;Dels=0.0;FS=15.091;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=10.64;ReadPosRankSum=-1.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258187    GT:AD:DP:GQ:PL    0/1:6,10:18:99:221,0,202
16    58537897    rs2427787    G    A    1076.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258187    GT:AD:DP:GQ:PL    1/1:0,31:31:87.23:1110,87,0
16    58544751    rs37038    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDRG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258187    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    58583975    rs1549607    A    G    88.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245138    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
16    58585369    rs7184114    C    A    403.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245138    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:436,33,0
16    58592278    rs41445346    C    T    234.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:268,21,0
16    58593522    rs7201946    C    T    251.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
16    58594340    rs71739184    AT    A    120.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=9;FS=0.0;HRun=14;HaplotypeScore=40.6108;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=0.751;QD=13.4;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:1,8:9:22.91:163,23,0
16    58610257    rs9936144    C    T    425.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:459,33,0
16    58614733    rs72790275    C    T    426.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:460,33,0
16    58616984    rs17854029    T    C    1749.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=G303;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58616960_58617086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1783,132,0
16    58619065    .    A    G    34.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.7;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    0/1:4,2:6:64.18:64,0,150
16    58620360    .    GT    G    501.51    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=1;HaplotypeScore=93.0648;IndelType=D;MQ=44.98;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:6,8:14:42.13:544,42,0
16    58620367    .    G    GA    1085.70    PASS    AC=2;AF=1.00;AN=2;DP=28;FS=0.0;HRun=1;HaplotypeScore=112.4824;IndelType=I;MQ=55.56;MQ0=0;QD=38.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:2,26:28:78.26:1128,78,0
16    58620885    rs950843    C    T    114.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:147,12,0
16    58620995    rs12443835    A    G    728.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:761,57,0
16    58622870    rs79349898    G    A    270.86    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=20.84;ReadPosRankSum=1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317147    GT:AD:DP:GQ:PL    0/1:4,9:13:99:301,0,127
16    58703966    rs9923128    A    G    548.20    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.317;DB;DP=37;Dels=0.0;FS=4.218;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.7;QD=14.82;ReadPosRankSum=-2.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219320    GT:AD:DP:GQ:PL    0/1:15,22:37:99:578,0,434
16    58714121    .    C    G    134.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.741;QD=13.49;ReadPosRankSum=-0.365;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_58713761_58714145;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219320    GT:AD:DP:GQ:PL    0/1:4,6:10:99:165,0,101
16    58743182    rs142747599    AAAAAC    A    437.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=60.4052;IndelType=D;MQ=66.18;MQ0=0;QD=43.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245206    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:479,30,0
16    58743454    rs30842    A    C    5396.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3106;MQ=57.27;MQ0=0;QD=31.56;SNPEFF_AMINO_ACID_CHANGE=V303G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58743321_58743471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434819    GT:AD:DP:GQ:PL    1/1:0,170:170:99:5396,397,0
16    58743723    rs30841    C    T    82.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245206    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
16    58750604    rs1058192    G    A    1539.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=C229;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58750567_58750717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434819    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1573,117,0
16    58750869    rs7204324    A    T    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492378    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:68,0,62
16    58752466    rs11076256    C    T    670.23    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.055;DB;DP=46;Dels=0.0;FS=1.145;HRun=0;HaplotypeScore=1.8932;MQ=60.0;MQ0=0;MQRankSum=-0.511;QD=14.57;ReadPosRankSum=-1.26;SNPEFF_AMINO_ACID_CHANGE=G145S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58752431_58752592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434819    GT:AD:DP:GQ:PL    0/1:24,22:46:99:700,0,766
16    58755848    rs187277    C    T    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245206    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
16    58755927    rs257631    A    G    157.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245206    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:190,18,0
16    58757398    rs257634    G    A    329.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245206    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:363,27,0
16    58757668    rs14221    A    C    4432.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.14;MQ0=0;QD=34.36;SNPEFF_AMINO_ACID_CHANGE=V76;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58757650_58757806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245206    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4432,334,0
16    58757683    rs257636    A    G    4414.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=N71;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_58757650_58757806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245206    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4415,337,0
16    61687701    rs16963768    C    T    355.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.971;QD=14.23;ReadPosRankSum=-0.915;SNPEFF_AMINO_ACID_CHANGE=T737;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_61685917_61688005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299345    GT:AD:DP:GQ:PL    0/1:10,15:25:99:386,0,255
16    61747669    rs12446623    T    G    109.06    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.231;QD=5.45;ReadPosRankSum=0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299345    GT:AD:DP:GQ:PL    0/1:14,5:20:99:139,0,517
16    61761418    rs11862141    A    C    240.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299345    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
16    64985093    rs35145    A    G    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268603    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
16    65015699    rs35215    C    T    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268603    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
16    65015908    rs35214    C    G    378.84    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.518;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.76;MQ0=0;MQRankSum=0.111;QD=6.76;ReadPosRankSum=0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268603    GT:AD:DP:GQ:PL    0/1:41,15:56:99:409,0,1350
16    65016087    rs35213    A    C    626.87    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.297;DB;DP=54;Dels=0.0;FS=1.065;HRun=0;HaplotypeScore=0.734;MQ=58.79;MQ0=0;MQRankSum=0.581;QD=11.61;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=S356A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_65015951_65016204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538390    GT:AD:DP:GQ:PL    0/1:30,24:54:99:657,0,929
16    65016285    rs35212    C    A    247.80    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.445;QD=13.04;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268603    GT:AD:DP:GQ:PL    0/1:11,8:19:99:278,0,331
16    65022114    rs28216    C    T    3410.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_AMINO_ACID_CHANGE=S298;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_65022060_65022247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538390    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3411,247,0
16    65025658    rs35196    T    C    930.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268603    GT:AD:DP:GQ:PL    1/1:0,28:28:75.21:963,75,0
16    65025718    rs35195    G    A    762.50    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=4.431;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.374;QD=17.33;ReadPosRankSum=-0.166;SNPEFF_AMINO_ACID_CHANGE=T238M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_65025671_65025838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538390    GT:AD:DP:GQ:PL    0/1:19,25:44:99:792,0,548
16    65025849    rs35194    A    G    1237.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268603    GT:AD:DP:GQ:PL    1/1:0,36:36:93.31:1271,93,0
16    65038674    rs35182    G    A    203.29    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=17;Dels=0.0;FS=6.286;HRun=1;HaplotypeScore=1.9134;MQ=57.23;MQ0=0;MQRankSum=-0.412;QD=11.96;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=P33;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_65038545_65038944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268603    GT:AD:DP:GQ:PL    0/1:8,9:17:99:233,0,191
16    65397282    rs3913028    A    G    39.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.97;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,2:5:69.83:70,0,98
16    65397291    rs58616603    T    C    64.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.0;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:68.42:95,0,68
16    66413150    rs2344564    T    C    559.36    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.294;QD=21.51;ReadPosRankSum=1.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341529    GT:AD:DP:GQ:PL    0/1:9,17:26:99:589,0,285
16    66413195    rs7499886    G    A    844.12    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=0.596;DB;DP=47;Dels=0.0;FS=2.856;HRun=1;HaplotypeScore=4.8677;MQ=59.01;MQ0=0;MQRankSum=-0.596;QD=17.96;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341529    GT:AD:DP:GQ:PL    0/1:19,28:47:99:874,0,577
16    66420885    rs1130844    C    T    291.50    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=1.901;DB;DP=35;Dels=0.0;FS=3.21;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.515;QD=8.33;ReadPosRankSum=0.622;SNPEFF_AMINO_ACID_CHANGE=G128;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_66420712_66421000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341529    GT:AD:DP:GQ:PL    0/1:24,11:35:99:321,0,697
16    66424235    rs2304527    T    G    178    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=17.8;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341529    GT:AD:DP:GQ:PL    0/1:4,6:10:99:208,0,139
16    66429808    rs6499079    A    G    98.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341529    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:131,12,0
16    66432190    rs2289148    C    T    37.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.72;QD=6.23;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341529    GT:AD:DP:GQ:PL    0/1:4,2:6:67.36:67,0,93
16    66432303    rs113303884    GACCACCCC    G    405.79    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=110.6402;IndelType=D;MQ=49.96;MQ0=0;MQRankSum=-2.383;QD=27.05;ReadPosRankSum=-2.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341529    GT:AD:DP:GQ:PL    0/1:9,6:15:99:445,0,479
16    66434571    rs6499082    G    C    339.46    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.303;QD=16.16;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341529    GT:AD:DP:GQ:PL    0/1:10,11:21:99:369,0,330
16    66657495    rs12446021    G    A    185.62    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-1.001;QD=20.62;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMTM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330687    GT:AD:DP:GQ:PL    0/1:3,6:9:95.47:216,0,95
16    66918096    .    AG    A    112.39    PASS    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=3.934;DP=34;FS=0.0;HRun=1;HaplotypeScore=255.9372;IndelType=D;MQ=51.25;MQ0=0;MQRankSum=-1.632;QD=3.31;ReadPosRankSum=1.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311765    GT:AD:DP:GQ:PL    0/1:29,5:34:99:151,0,242
16    66946894    rs112552212    CGT    C    48.86    QDFilter2    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=2.1;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=283.3795;IndelType=D;MQ=56.92;MQ0=0;MQRankSum=-1.43;QD=1.06;ReadPosRankSum=-1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299752    GT:AD:DP:GQ:PL    0/1:39,5:46:87.89:88,0,768
16    67178973    rs61023332    C    T    107.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.38;QD=15.38;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449549    GT:AD:DP:GQ:PL    0/1:3,4:7:64.18:138,0,64
16    67188455    rs79616223    A    G    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRADD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486556    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,70
16    67197776    rs76287029    C    CG    304.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=8;HaplotypeScore=39.2948;IndelType=I;MQ=60.77;MQ0=0;QD=21.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518148    GT:AD:DP:GQ:PL    1/1:3,11:14:30.09:346,30,0
16    67221050    rs9924876    A    G    2059.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=59.25;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314553    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2092,157,0
16    67233266    rs12923138    A    C    332.60    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.024;DB;DP=28;Dels=0.0;FS=8.916;HRun=1;HaplotypeScore=0.0;MQ=57.48;MQ0=0;MQRankSum=1.781;QD=11.88;ReadPosRankSum=-2.22;SNPEFF_AMINO_ACID_CHANGE=K66Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67233014_67233307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360833    GT:AD:DP:GQ:PL    0/1:15,13:28:99:363,0,480
16    67273173    rs150016766    G    A    196.36    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=13.09;ReadPosRankSum=-0.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258201    GT:AD:DP:GQ:PL    0/1:7,8:15:99:226,0,221
16    67315122    rs145100039    TC    T    60.13    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=3.205;DB;DP=29;FS=5.898;HRun=1;HaplotypeScore=219.7686;IndelType=D;MQ=52.81;MQ0=0;MQRankSum=0.868;QD=2.07;ReadPosRankSum=2.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360461    GT:AD:DP:GQ:PL    0/1:22,7:29:99:99,0,345
16    67315123    rs67243268    CT    C    161.81    PASS    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=1.644;DB;DP=27;FS=0.0;HRun=4;HaplotypeScore=202.2043;IndelType=D;MQ=53.2;MQ0=0;MQRankSum=0.044;QD=5.99;ReadPosRankSum=2.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360461    GT:AD:DP:GQ:PL    0/1:22,5:27:99:201,0,255
16    67316234    rs11860295    C    T    169.05    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.39;ReadPosRankSum=-1.268;SNPEFF_AMINO_ACID_CHANGE=T331I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67316104_67316252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450733    GT:AD:DP:GQ:PL    0/1:11,7:18:99:199,0,352
16    67316600    rs7200919    G    A    556.39    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.982;QD=15.46;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360461    GT:AD:DP:GQ:PL    0/1:19,17:36:99:586,0,615
16    67318242    rs8044843    A    G    187.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=9;Dels=0.0;FS=3.332;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=20.79;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=D444G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67318178_67318360;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450733    GT:AD:DP:GQ:PL    0/1:3,6:9:51.48:217,0,51
16    67320223    rs3868142    G    A    1088.62    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.728;DB;DP=67;Dels=0.0;FS=3.497;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=2.727;QD=16.25;ReadPosRankSum=0.664;SNPEFF_AMINO_ACID_CHANGE=R749H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67320177_67320266;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450733    GT:AD:DP:GQ:PL    0/1:29,38:67:99:1119,0,870
16    67324827    rs8053912    A    G    133.08    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=9.51;ReadPosRankSum=-0.779;SNPEFF_AMINO_ACID_CHANGE=D876;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67324788_67324889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304372    GT:AD:DP:GQ:PL    0/1:6,7:13:99:163,0,177
16    67324907    rs60723963    A    G    164.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=14;Dels=0.0;FS=5.756;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=11.77;ReadPosRankSum=-1.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360461    GT:AD:DP:GQ:PL    0/1:6,8:14:99:195,0,199
16    67324957    rs27860    T    C    227.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360461    GT:AD:DP:GQ:PL    1/1:0,9:9:24.02:260,24,0
16    67325711    rs16957289    C    T    267.15    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.803;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.259;QD=10.28;ReadPosRankSum=2.076;SNPEFF_AMINO_ACID_CHANGE=E750K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67325549_67325740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304372    GT:AD:DP:GQ:PL    0/1:15,11:26:99:297,0,412
16    67328453    rs3868143    T    C    776.12    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.303;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.239;QD=14.93;ReadPosRankSum=-0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304372    GT:AD:DP:GQ:PL    0/1:28,24:52:99:806,0,911
16    67380550    rs7184253    T    C    75.88    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.97;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329956    GT:AD:DP:GQ:PL    0/1:1,3:4:22.31:106,0,22
16    67381383    rs79636320    G    C    335.57    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=36;Dels=0.0;FS=3.749;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.153;QD=9.32;ReadPosRankSum=-1.317;SNPEFF_AMINO_ACID_CHANGE=R5P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67381311_67381494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435835    GT:AD:DP:GQ:PL    0/1:23,13:36:99:366,0,635
16    67384060    rs35595978    C    CT    191.78    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=2.53;DB;DP=47;FS=0.0;HRun=14;HaplotypeScore=374.7968;IndelType=I;MQ=50.43;MQ0=0;MQRankSum=-1.927;QD=4.08;ReadPosRankSum=-1.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290940    GT:AD:DP:GQ:PL    0/1:30,10:47:99:231,0,174
16    67384226    rs1966913    A    T    1161.72    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.359;DB;DP=85;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.63;MQ0=0;MQRankSum=0.635;QD=13.67;ReadPosRankSum=1.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290940    GT:AD:DP:GQ:PL    0/1:40,45:85:99:1192,0,1199
16    67397580    rs9922085    G    C    910.99    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=0.508;DB;DP=65;Dels=0.0;FS=2.107;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=14.02;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=R101P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67397493_67397617;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435835    GT:AD:DP:GQ:PL    0/1:29,36:65:99:941,0,844
16    67409180    rs8052655    G    A    3542.70    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=7.526;DB;DP=250;DS;Dels=0.0;FS=4.486;HRun=0;HaplotypeScore=6.7551;MQ=58.98;MQ0=0;MQRankSum=-1.414;QD=14.17;ReadPosRankSum=-0.238;SNPEFF_AMINO_ACID_CHANGE=G241S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67409150_67409315;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290940    GT:AD:DP:GQ:PL    0/1:128,122:250:99:3543,0,3551
16    67410583    rs7205526    C    T    587.96    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.518;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.659;QD=15.89;ReadPosRankSum=1.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290940    GT:AD:DP:GQ:PL    0/1:16,21:37:99:618,0,554
16    67418957    rs16957415    A    G    298.94    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=38;Dels=0.0;FS=4.079;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.958;QD=7.87;ReadPosRankSum=-0.581;SNPEFF_AMINO_ACID_CHANGE=S216G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67418773_67419028;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541146    GT:AD:DP:GQ:PL    0/1:26,12:38:99:329,0,788
16    67424122    rs11552319    G    A    401.26    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.283;DB;DP=35;Dels=0.0;FS=3.654;HRun=0;HaplotypeScore=0.8941;MQ=59.34;MQ0=0;MQRankSum=1.717;QD=11.46;ReadPosRankSum=0.817;SNPEFF_AMINO_ACID_CHANGE=S162;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67423728_67424265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290942    GT:AD:DP:GQ:PL    0/1:20,15:35:99:431,0,565
16    67424412    rs11552322    T    A    1383.06    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.574;DB;DP=111;Dels=0.0;FS=1.921;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.011;QD=12.46;ReadPosRankSum=0.404;SNPEFF_AMINO_ACID_CHANGE=A104;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67424382_67424535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPPP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290942    GT:AD:DP:GQ:PL    0/1:58,53:111:99:1413,0,1912
16    67424693    rs8053264    T    C    169.85    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.224;DB;DP=16;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=10.62;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348579    GT:AD:DP:GQ:PL    0/1:10,6:16:99:200,0,354
16    67432255    rs150874973    C    A    131.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=8.76;ReadPosRankSum=0.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348579    GT:AD:DP:GQ:PL    0/1:10,5:15:99:161,0,295
16    67441762    rs874469    G    A    283.96    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.204;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.776;QD=14.95;ReadPosRankSum=2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348579    GT:AD:DP:GQ:PL    0/1:10,9:19:99:314,0,358
16    67469733    rs5479    C    A    278.68    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.4;DB;DP=23;Dels=0.0;FS=6.373;HRun=1;HaplotypeScore=0.5784;MQ=58.99;MQ0=0;MQRankSum=-0.215;QD=12.12;ReadPosRankSum=-1.077;SNPEFF_AMINO_ACID_CHANGE=T156;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67469531_67469743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD11B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326152    GT:AD:DP:GQ:PL    0/1:12,11:23:99:309,0,376
16    67469915    rs45483293    G    A    388.72    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.412;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5661;MQ=59.2;MQ0=0;MQRankSum=0.437;QD=13.4;ReadPosRankSum=0.528;SNPEFF_AMINO_ACID_CHANGE=E178;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67469860_67470045;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD11B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326152    GT:AD:DP:GQ:PL    0/1:14,15:29:99:419,0,414
16    67516945    rs5030980    C    T    1060.16    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.064;DB;DP=91;Dels=0.0;FS=12.861;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.662;QD=11.65;ReadPosRankSum=0.916;SNPEFF_AMINO_ACID_CHANGE=A67T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67516928_67517013;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AGRP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290953    GT:AD:DP:GQ:PL    0/1:48,43:91:99:1090,0,1396
16    67574408    rs75204333    T    C    501.77    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.384;DB;DP=45;Dels=0.0;FS=6.473;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.916;QD=11.15;ReadPosRankSum=-1.974;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000042381    GT:AD:DP:GQ:PL    0/1:24,21:45:99:532,0,726
16    67578143    rs79437914    C    A    197.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.959;QD=9.42;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000042381    GT:AD:DP:GQ:PL    0/1:12,9:21:99:228,0,393
16    67671828    rs149059545    C    T    239.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.555;QD=13.3;ReadPosRankSum=1.111;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264010    GT:AD:DP:GQ:PL    0/1:10,8:18:99:269,0,277
16    67681170    rs59376497    C    T    400.08    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=31;Dels=0.0;FS=2.176;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.67;QD=12.91;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLTPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334583    GT:AD:DP:GQ:PL    0/1:13,18:31:99:430,0,371
16    67682580    rs9972635    T    C    317.25    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=24;Dels=0.0;FS=2.143;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.381;QD=13.22;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RLTPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334583    GT:AD:DP:GQ:PL    0/1:10,14:24:99:347,0,306
16    67691258    rs117444844    C    T    452.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.028;DB;DP=26;Dels=0.0;FS=1.603;HRun=1;HaplotypeScore=1.9866;MQ=58.2;MQ0=0;MQRankSum=-0.416;QD=17.41;ReadPosRankSum=0.693;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219251    GT:AD:DP:GQ:PL    0/1:10,15:26:99:483,0,254
16    67691668    rs6979    A    G    477.06    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.963;DB;DP=31;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=1.9995;MQ=60.0;MQ0=0;MQRankSum=-0.586;QD=15.39;ReadPosRankSum=-0.502;SNPEFF_AMINO_ACID_CHANGE=V515A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67691665_67691756;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219251    GT:AD:DP:GQ:PL    0/1:14,17:31:99:507,0,405
16    67696365    rs35356834    G    A    375.12    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=34;Dels=0.0;FS=1.352;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.052;QD=11.03;ReadPosRankSum=0.535;SNPEFF_AMINO_ACID_CHANGE=V285I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67695799_67696680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD6A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458121    GT:AD:DP:GQ:PL    0/1:18,16:34:99:405,0,608
16    67699948    rs7187476    T    C    297.35    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.802;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.088;QD=13.52;ReadPosRankSum=0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219255    GT:AD:DP:GQ:PL    0/1:12,10:22:99:327,0,392
16    67701447    rs145929427    G    A    159.25    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.482;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.212;QD=9.37;ReadPosRankSum=-0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219255    GT:AD:DP:GQ:PL    0/1:10,7:17:99:189,0,275
16    67761825    rs73591936    G    A    208.40    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=13.89;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425512    GT:AD:DP:GQ:PL    0/1:8,7:15:99:238,0,256
16    67761917    rs112526325    T    C    51.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=10.22;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425512    GT:AD:DP:GQ:PL    0/1:2,3:5:66.25:81,0,66
16    67854534    rs28367503    A    G    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TSNAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388833    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,73
16    67855107    rs62636658    C    T    68.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.82;MQ0=0;MQRankSum=1.231;QD=11.35;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=H85Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67855002_67855128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TSNAXIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415766    GT:AD:DP:GQ:PL    0/1:3,3:6:32.73:98,0,33
16    67857436    rs11865098    A    G    199.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219172    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:232,21,0
16    67860637    rs62620177    C    T    1201.09    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.143;DB;DP=83;Dels=0.0;FS=3.307;HRun=1;HaplotypeScore=0.8321;MQ=59.72;MQ0=0;MQRankSum=-1.735;QD=14.47;ReadPosRankSum=-0.524;SNPEFF_AMINO_ACID_CHANGE=R218C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67860595_67860747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TSNAXIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431934    GT:AD:DP:GQ:PL    0/1:42,41:83:99:1231,0,1243
16    67863451    rs3743733    T    C    198.47    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=2.817;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=16.54;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445712    GT:AD:DP:GQ:PL    0/1:5,7:12:99:228,0,128
16    67865073    rs8052287    G    A    1345.65    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.853;DB;DP=107;Dels=0.0;FS=0.729;HRun=0;HaplotypeScore=1.6553;MQ=59.78;MQ0=0;MQRankSum=0.505;QD=12.58;ReadPosRankSum=1.672;SNPEFF_AMINO_ACID_CHANGE=P147L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67864808_67865261;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445712    GT:AD:DP:GQ:PL    0/1:58,49:107:99:1376,0,1573
16    67865287    rs8052191    A    C    230.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=14;Dels=0.0;FS=7.83;HRun=0;HaplotypeScore=0.9867;MQ=58.33;MQ0=0;MQRankSum=1.892;QD=16.46;ReadPosRankSum=-2.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TSNAXIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388833    GT:AD:DP:GQ:PL    0/1:6,8:14:99:260,0,198
16    67876823    rs34213159    ACAG    A    609.05    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=4.378;DB;DP=60;FS=3.367;HRun=0;HaplotypeScore=285.4958;IndelType=D;MQ=62.09;MQ0=0;MQRankSum=3.39;QD=10.15;ReadPosRankSum=-1.942;SNPEFF_AMINO_ACID_CHANGE=Q123-;SNPEFF_CODON_CHANGE=cag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_16_67876213_67878097;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303596    GT:AD:DP:GQ:PL    0/1:39,21:60:99:648,0,1409
16    67898797    rs1123072    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219169    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    67902326    rs2271294    A    T    1277.36    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.477;DB;DP=108;Dels=0.0;FS=1.816;HRun=0;HaplotypeScore=1.8991;MQ=59.57;MQ0=0;MQRankSum=0.978;QD=11.83;ReadPosRankSum=-0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219169    GT:AD:DP:GQ:PL    0/1:63,45:108:99:1307,0,2193
16    67909800    rs147343788    T    C    1037.38    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.705;DB;DP=59;Dels=0.0;FS=2.707;HRun=0;HaplotypeScore=2.246;MQ=58.82;MQ0=0;MQRankSum=-0.64;QD=17.58;ReadPosRankSum=-1.612;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUTF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219169    GT:AD:DP:GQ:PL    0/1:24,35:59:99:1067,0,683
16    67911517    rs8060686    T    C    897.24    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.94;DB;DP=61;Dels=0.0;FS=2.22;HRun=0;HaplotypeScore=1.9907;MQ=58.86;MQ0=0;MQRankSum=-0.418;QD=14.71;ReadPosRankSum=-0.464;SNPEFF_AMINO_ACID_CHANGE=C181;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67911412_67911559;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536072    GT:AD:DP:GQ:PL    0/1:27,34:61:99:927,0,823
16    67911874    rs8061384    T    G    117.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.64;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358933    GT:AD:DP:GQ:PL    0/1:2,4:6:65.23:148,0,65
16    67914967    .    C    T    1042.81    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.693;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7905;MQ=59.77;MQ0=0;MQRankSum=-0.982;QD=12.87;ReadPosRankSum=-1.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536072    GT:AD:DP:GQ:PL    0/1:39,42:81:99:1073,0,1170
16    67916047    rs117539386    C    G    329.32    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.249;DB;DP=21;Dels=0.0;FS=7.06;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.107;QD=15.68;ReadPosRankSum=0.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536072    GT:AD:DP:GQ:PL    0/1:9,12:21:99:359,0,242
16    67916072    .    GCTT    G    470.53    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DP=23;FS=0.0;HRun=0;HaplotypeScore=120.2263;IndelType=D;MQ=58.45;MQ0=0;MQRankSum=-0.462;QD=20.46;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536072    GT:AD:DP:GQ:PL    0/1:11,12:23:99:510,0,632
16    67916271    rs145920378    T    C    433.19    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.049;DB;DP=27;Dels=0.0;FS=1.576;HRun=2;HaplotypeScore=0.9578;MQ=59.31;MQ0=0;MQRankSum=-0.317;QD=16.04;ReadPosRankSum=1.586;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536072    GT:AD:DP:GQ:PL    0/1:12,15:27:99:463,0,410
16    67964203    rs1134760    T    C    401.26    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.542;DB;DP=34;Dels=0.0;FS=5.287;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.207;QD=11.8;ReadPosRankSum=0.367;SNPEFF_AMINO_ACID_CHANGE=H173R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67964088_67964221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTRL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319955    GT:AD:DP:GQ:PL    0/1:20,14:34:99:431,0,627
16    67969531    rs14178    A    G    373.89    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=0.744;DB;DP=41;Dels=0.0;FS=8.018;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.907;QD=9.12;ReadPosRankSum=0.447;SNPEFF_AMINO_ACID_CHANGE=G151;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67969485_67969600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358514    GT:AD:DP:GQ:PL    0/1:26,15:41:99:404,0,745
16    67969930    rs20549    A    G    333.70    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DB;DP=32;Dels=0.0;FS=7.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=10.43;ReadPosRankSum=0.586;SNPEFF_AMINO_ACID_CHANGE=L107;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67969866_67970006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358514    GT:AD:DP:GQ:PL    0/1:19,13:32:99:364,0,523
16    67973953    rs5923    G    A    787.90    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.581;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=55.97;MQ0=0;MQRankSum=1.662;QD=12.12;ReadPosRankSum=1.011;SNPEFF_AMINO_ACID_CHANGE=L393;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67973653_67974381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCAT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264005    GT:AD:DP:GQ:PL    0/1:35,30:65:99:818,0,1038
16    67980969    rs11860125    G    C    252.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.706;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.501;QD=14.0;ReadPosRankSum=-0.265;SNPEFF_AMINO_ACID_CHANGE=L673;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67980840_67981008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541864    GT:AD:DP:GQ:PL    0/1:9,9:18:99:282,0,270
16    67981896    rs7200210    A    G    442.88    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.34;MQ0=0;MQRankSum=0.59;QD=12.65;ReadPosRankSum=1.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316341    GT:AD:DP:GQ:PL    0/1:20,15:35:99:473,0,616
16    67984589    rs11542821    A    G    30.98    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=3.87;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=G443;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_67984557_67984614;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541864    GT:AD:DP:GQ:PL    0/1:6,2:8:60.97:61,0,150
16    67984804    rs116856853    G    A    255.20    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=18.23;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316341    GT:AD:DP:GQ:PL    0/1:5,9:14:99:285,0,135
16    68010195    rs28668419    C    G    426.10    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.234;QD=12.53;ReadPosRankSum=0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268793    GT:AD:DP:GQ:PL    0/1:16,18:34:99:456,0,559
16    68010262    rs28490940    G    C    112.32    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.48;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268793    GT:AD:DP:GQ:PL    0/1:4,5:9:99:142,0,147
16    68013471    rs255049    T    C    262.93    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.142;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.498;QD=10.96;ReadPosRankSum=-1.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268793    GT:AD:DP:GQ:PL    0/1:14,10:24:99:293,0,477
16    68021468    rs1133090    G    C    1245.95    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.449;DB;DP=102;Dels=0.0;FS=5.59;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=-0.854;QD=12.22;ReadPosRankSum=0.119;SNPEFF_AMINO_ACID_CHANGE=H381D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68021300_68021663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322384    GT:AD:DP:GQ:PL    0/1:48,54:102:99:1276,0,1476
16    68023169    rs117782866    G    A    258    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.876;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.651;QD=11.22;ReadPosRankSum=0.899;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268795    GT:AD:DP:GQ:PL    0/1:13,10:23:99:288,0,331
16    68023790    rs76177657    C    T    136.62    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.267;QD=9.76;ReadPosRankSum=-2.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268795    GT:AD:DP:GQ:PL    0/1:9,5:14:99:167,0,322
16    68025801    rs255051    G    C    1087.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_AMINO_ACID_CHANGE=P114R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68025741_68025882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322384    GT:AD:DP:GQ:PL    1/1:0,36:36:87.25:1121,87,0
16    68026126    rs73596365    T    C    294    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=11.76;ReadPosRankSum=1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268795    GT:AD:DP:GQ:PL    0/1:14,11:25:99:324,0,475
16    68057096    rs237831    T    C    150.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_AMINO_ACID_CHANGE=T4A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68055179_68057770;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332395    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:183,15,0
16    68072004    rs11555012    A    G    597.16    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.392;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.557;QD=12.44;ReadPosRankSum=-1.919;SNPEFF_AMINO_ACID_CHANGE=P26;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68071909_68072052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUS2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358896    GT:AD:DP:GQ:PL    0/1:25,23:48:99:627,0,823
16    68100461    rs2285912    C    T    1775.44    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=2.421;DB;DP=136;Dels=0.0;FS=3.116;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=13.05;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358896    GT:AD:DP:GQ:PL    0/1:75,61:136:99:1805,0,2215
16    68104229    rs147204112    A    G    159.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=15.97;ReadPosRankSum=2.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUS2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358896    GT:AD:DP:GQ:PL    0/1:4,6:10:99:190,0,129
16    68269479    rs141865143    A    G    31.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.5;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473183    GT:AD:DP:GQ:PL    0/1:4,3:7:61.50:61,0,145
16    68288983    rs2290700    T    G    242.35    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=14;Dels=0.0;FS=2.963;HRun=4;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.6;QD=17.31;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219345    GT:AD:DP:GQ:PL    0/1:5,9:14:99:272,0,148
16    68289059    rs2290699    C    T    147.86    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6384;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=21.12;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219345    GT:AD:DP:GQ:PL    0/1:2,5:7:43.27:178,0,43
16    68289739    rs76404867    C    T    476.72    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.224;DB;DP=42;Dels=0.0;FS=1.264;HRun=0;HaplotypeScore=0.9947;MQ=59.45;MQ0=0;MQRankSum=1.289;QD=11.35;ReadPosRankSum=1.44;SNPEFF_AMINO_ACID_CHANGE=P191;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68289669_68289893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219345    GT:AD:DP:GQ:PL    0/1:23,19:42:99:507,0,578
16    68293320    rs3743739    T    C    728.71    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=3.574;DB;DP=56;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.399;QD=13.01;ReadPosRankSum=-2.411;SNPEFF_AMINO_ACID_CHANGE=G133;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68293049_68293810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444212    GT:AD:DP:GQ:PL    0/1:31,25:56:99:759,0,847
16    68321923    rs150599161    T    C    30.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219343    GT:AD:DP:GQ:PL    0/1:2,2:4:56.62:60,0,57
16    68337798    rs6499167    T    A    145.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219343    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:178,15,0
16    68344696    rs3803650    C    T    1455.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.214;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.534;QD=26.95;ReadPosRankSum=-1.351;SNPEFF_AMINO_ACID_CHANGE=G45D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68344638_68344848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A6OS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263997    GT:AD:DP:GQ:PL    1/1:2,52:54:75.59:1488,76,0
16    68362809    rs2290698    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    68363181    rs1111571    G    A    126.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
16    68371591    rs12920348    A    G    49.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=7.13;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    0/1:4,3:7:79.93:80,0,126
16    68371606    rs34788981    T    TG    139.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=7;HaplotypeScore=16.3078;IndelType=I;MQ=60.0;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:181,15,0
16    68373954    rs9928605    C    T    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.61;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:108,0,67
16    68382447    rs2863975    T    C    126.09    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=14.01;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    0/1:4,5:9:99:156,0,139
16    68383936    rs8061122    A    G    348.14    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.171;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.217;QD=14.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    0/1:11,13:24:99:378,0,384
16    68384010    rs4783554    A    G    2888.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    1/1:0,81:82:99:2922,217,0
16    68384039    rs11075672    T    C    1257.24    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=92;Dels=0.0;FS=6.233;HRun=0;HaplotypeScore=0.9665;MQ=59.5;MQ0=0;MQRankSum=-0.858;QD=13.67;ReadPosRankSum=1.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    0/1:49,43:92:99:1287,0,1510
16    68387373    rs1562479    C    T    133.33    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.047;QD=7.41;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219334    GT:AD:DP:GQ:PL    0/1:12,6:18:99:163,0,376
16    68387496    rs1868159    A    C    1262.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.7887;MQ=57.19;MQ0=0;QD=30.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219334    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1296,102,0
16    68389772    rs1131933    C    T    233.21    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=23.32;ReadPosRankSum=-1.271;SNPEFF_AMINO_ACID_CHANGE=T451;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68389626_68389786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348497    GT:AD:DP:GQ:PL    0/1:2,8:10:49.92:263,0,50
16    68390697    rs61733486    C    T    30.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.09;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=P487;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68390604_68390700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348497    GT:AD:DP:GQ:PL    0/1:4,2:6:60.53:61,0,124
16    68391189    rs7192234    C    G    718.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:752,60,0
16    68395094    rs2279539    G    A    168.22    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=24.03;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    0/1:1,6:7:16.75:198,0,17
16    68395313    rs71393993    G    A    58.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=14.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339507    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:91,9,0
16    68395522    rs71395853    C    T    944.52    PASS    AB=0.352;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=55;Dels=0.0;FS=1.138;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;MQRankSum=0.282;QD=17.17;ReadPosRankSum=-0.653;SNPEFF_AMINO_ACID_CHANGE=C617Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68395506_68395662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000219334    GT:AD:DP:GQ:PL    0/1:19,35:55:99:975,0,550
16    68397530    rs3826167    T    G    313.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219334    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:347,27,0
16    68398924    rs1868158    C    T    516.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.09;MQ0=1;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=P465;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68398920_68398995;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMPD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219334    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:550,42,0
16    68573945    rs1182968    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398253    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    68598007    rs1177648    A    G    1993.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.05;MQ0=0;QD=31.14;SNPEFF_AMINO_ACID_CHANGE=Q439;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68596947_68601039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP90;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398253    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2026,154,0
16    68710165    rs3118229    T    C    186.13    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=26.59;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:1,6:7:20.16:216,0,20
16    68711999    rs1952048    A    G    443.20    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.893;DB;DP=32;Dels=0.0;FS=13.169;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.02;QD=13.85;ReadPosRankSum=1.925;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:17,15:32:99:473,0,589
16    68712217    rs2296410    T    C    681.83    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.918;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.933;MQ=59.64;MQ0=0;MQRankSum=-0.624;QD=14.2;ReadPosRankSum=0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:22,26:48:99:712,0,688
16    68713730    rs2296409    G    A    780.39    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.512;DB;DP=46;Dels=0.0;FS=6.133;HRun=0;HaplotypeScore=1.9416;MQ=53.67;MQ0=0;MQRankSum=-0.033;QD=16.97;ReadPosRankSum=0.454;SNPEFF_AMINO_ACID_CHANGE=T185;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68713702_68713877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542274    GT:AD:DP:GQ:PL    0/1:20,26:46:99:810,0,562
16    68713823    rs2296408    C    A    759.38    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.169;DB;DP=63;Dels=0.0;FS=0.983;HRun=1;HaplotypeScore=0.0;MQ=58.15;MQ0=0;MQRankSum=1.608;QD=12.05;ReadPosRankSum=-0.621;SNPEFF_AMINO_ACID_CHANGE=T216;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68713702_68713877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542274    GT:AD:DP:GQ:PL    0/1:34,29:63:99:789,0,972
16    68716179    rs1886697    T    C    254.22    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=13;Dels=0.0;FS=2.757;HRun=0;HaplotypeScore=0.9578;MQ=58.2;MQ0=0;MQRankSum=-0.54;QD=19.56;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:4,9:13:99:284,0,122
16    68718367    rs4783661    T    C    2141.49    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=5.294;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6545;MQ=60.0;MQ0=0;MQRankSum=-0.434;QD=16.1;ReadPosRankSum=-0.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:67,66:133:99:2171,0,2176
16    68718750    rs2281850    A    G    960.95    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=3.316;DB;DP=88;Dels=0.0;FS=11.745;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.477;QD=10.92;ReadPosRankSum=-1.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:53,35:88:99:991,0,1713
16    68721340    rs2296406    G    A    226.19    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.769;QD=20.56;ReadPosRankSum=1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:4,7:11:99:256,0,111
16    68721470    rs2296405    T    C    1259.22    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.873;DB;DP=73;Dels=0.0;FS=0.987;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.442;QD=17.25;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=N487;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68721415_68721639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542274    GT:AD:DP:GQ:PL    0/1:27,46:73:99:1289,0,856
16    68725486    rs2274240    A    G    224.53    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=18.71;ReadPosRankSum=-1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:5,7:12:99:255,0,162
16    68725783    rs2274239    G    A    698.41    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.155;DB;DP=49;Dels=0.0;FS=2.969;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.459;QD=14.25;ReadPosRankSum=0.424;SNPEFF_AMINO_ACID_CHANGE=K597;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68725623_68725829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542274    GT:AD:DP:GQ:PL    0/1:23,26:49:99:728,0,632
16    68728938    rs3785134    C    T    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=51.77;MQ0=0;QD=13.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
16    68728976    rs3785135    C    A    120.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
16    68729112    rs8060790    A    G    469.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.334;QD=17.39;ReadPosRankSum=-0.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264012    GT:AD:DP:GQ:PL    0/1:9,18:27:99:500,0,176
16    68729785    rs17715450    C    A    484.91    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=35;Dels=0.0;FS=1.5;HRun=0;HaplotypeScore=1.8332;MQ=59.34;MQ0=0;MQRankSum=0.259;QD=13.85;ReadPosRankSum=1.742;SNPEFF_AMINO_ACID_CHANGE=R692;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68729680_68729826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542274    GT:AD:DP:GQ:PL    0/1:19,16:35:99:515,0,486
16    68732457    rs1886699    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429102    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    68842895    rs7188750    G    A    77.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.5;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261769    GT:AD:DP:GQ:PL    0/1:2,3:5:66.50:107,0,66
16    68847584    rs8056633    T    G    421.29    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.195;DB;DP=39;Dels=0.0;FS=3.921;HRun=1;HaplotypeScore=8.9849;MQ=58.81;MQ0=0;MQRankSum=-1.105;QD=10.8;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261769    GT:AD:DP:GQ:PL    0/1:23,15:39:99:451,0,802
16    68857036    rs73562605    C    G    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261769    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
16    68857289    rs2276330    T    C    331.62    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.603;DB;DP=33;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.313;QD=10.05;ReadPosRankSum=0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261769    GT:AD:DP:GQ:PL    0/1:20,13:33:99:362,0,665
16    68857441    rs1801552    T    C    688.03    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.051;DB;DP=55;Dels=0.0;FS=1.131;HRun=1;HaplotypeScore=1.6637;MQ=58.73;MQ0=0;MQRankSum=1.881;QD=12.51;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=A631;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68857302_68857529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422392    GT:AD:DP:GQ:PL    0/1:22,33:55:99:718,0,638
16    68867456    rs1801026    C    T    76.64    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.988;QD=9.58;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422392    GT:AD:DP:GQ:PL    0/1:3,5:8:94.48:107,0,94
16    68893781    rs17690624    C    T    92.72    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=7.13;ReadPosRankSum=-1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261778    GT:AD:DP:GQ:PL    0/1:9,4:13:99:123,0,338
16    68893953    rs4597312    T    C    854.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.175;DB;DP=54;Dels=0.0;FS=6.554;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.949;QD=15.82;ReadPosRankSum=-0.374;SNPEFF_AMINO_ACID_CHANGE=S87;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_68893787_68894427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261778    GT:AD:DP:GQ:PL    0/1:24,30:54:99:884,0,800
16    68901284    rs17623268    C    T    121.99    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=9.38;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261778    GT:AD:DP:GQ:PL    0/1:8,5:13:99:152,0,272
16    68953309    rs34379411    C    T    81.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.42;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMCO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261778    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:112,0,30
16    69143481    rs2232227    T    G    333.86    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=29;Dels=0.0;FS=3.473;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.364;QD=11.51;ReadPosRankSum=-0.995;SNPEFF_AMINO_ACID_CHANGE=L61;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69143299_69143934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219322    GT:AD:DP:GQ:PL    0/1:15,14:29:99:364,0,460
16    69143577    rs2232228    A    G    205.75    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DB;DP=20;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=10.29;ReadPosRankSum=-1.266;SNPEFF_AMINO_ACID_CHANGE=A93;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69143299_69143934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219322    GT:AD:DP:GQ:PL    0/1:10,9:20:99:236,0,327
16    69155309    rs118093016    C    A    135.05    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.188;DB;DP=19;Dels=0.0;FS=1.82;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.362;QD=7.11;ReadPosRankSum=-2.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219322    GT:AD:DP:GQ:PL    0/1:11,8:19:99:165,0,373
16    69187318    rs5011579    C    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIRH1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314423    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
16    69201050    rs61185783    C    T    1071.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.02;DB;DP=70;Dels=0.0;FS=3.464;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.305;QD=15.31;ReadPosRankSum=0.763;SNPEFF_AMINO_ACID_CHANGE=R521C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69200978_69201088;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIRH1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352319    GT:AD:DP:GQ:PL    0/1:35,35:70:99:1102,0,919
16    69221510    rs10650    C    G    69.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=3.136;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=8.7;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=P147;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69221032_69221649;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336278    GT:AD:DP:GQ:PL    0/1:4,4:8:91.52:100,0,92
16    69303943    rs17624424    G    A    490.41    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.996;DB;DP=36;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9916;MQ=59.36;MQ0=0;MQRankSum=-0.887;QD=13.62;ReadPosRankSum=1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336278    GT:AD:DP:GQ:PL    0/1:17,19:36:99:520,0,515
16    69317807    rs12325242    G    C    109.84    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.2;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336278    GT:AD:DP:GQ:PL    0/1:5,4:9:99:140,0,182
16    69337574    rs8058805    G    A    963.13    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=64;Dels=0.0;FS=2.104;HRun=1;HaplotypeScore=2.6487;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=15.05;ReadPosRankSum=-0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467311    GT:AD:DP:GQ:PL    0/1:33,31:64:99:993,0,1067
16    69349738    rs153050    T    C    72.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.36;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254950    GT:AD:DP:GQ:PL    0/1:3,4:7:99:103,0,105
16    69349785    rs11644691    T    C    284.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.189;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=14.22;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254950    GT:AD:DP:GQ:PL    0/1:10,10:20:99:314,0,345
16    69350035    rs3817030    A    C    478.53    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=44;Dels=0.0;FS=1.202;HRun=0;HaplotypeScore=0.734;MQ=58.95;MQ0=0;MQRankSum=-1.484;QD=10.88;ReadPosRankSum=0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254950    GT:AD:DP:GQ:PL    0/1:25,19:44:99:509,0,762
16    69350069    rs12708896    C    G    430.99    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.904;DB;DP=38;Dels=0.0;FS=1.377;HRun=2;HaplotypeScore=0.6651;MQ=58.16;MQ0=0;MQRankSum=1.456;QD=11.34;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254950    GT:AD:DP:GQ:PL    0/1:22,16:38:99:461,0,589
16    69354963    rs1127231    A    G    319.23    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.861;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.541;QD=9.98;ReadPosRankSum=-0.901;SNPEFF_AMINO_ACID_CHANGE=K287;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69354954_69355173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254950    GT:AD:DP:GQ:PL    0/1:19,13:32:99:349,0,548
16    69356695    rs11075714    A    G    41.56    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=3.78;ReadPosRankSum=-2.262;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306875    GT:AD:DP:GQ:PL    0/1:8,3:11:71.55:72,0,304
16    69362777    rs1055401    T    A    419.72    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.375;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.126;QD=19.08;ReadPosRankSum=0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254950    GT:AD:DP:GQ:PL    0/1:8,14:22:99:450,0,260
16    69362779    rs1055399    C    A    419.69    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.033;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.226;QD=18.25;ReadPosRankSum=0.355;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254950    GT:AD:DP:GQ:PL    0/1:8,15:23:99:450,0,266
16    69365123    rs9928658    G    T    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306875    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:76,6,0
16    69372927    rs3759979    T    C    341.54    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.196;QD=22.77;ReadPosRankSum=0.588;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288025    GT:AD:DP:GQ:PL    0/1:4,11:15:99:372,0,122
16    69373894    rs11643686    T    A    453.66    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.258;DB;DP=53;Dels=0.0;FS=1.141;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.059;QD=8.56;ReadPosRankSum=-0.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288025    GT:AD:DP:GQ:PL    0/1:35,18:53:99:484,0,1220
16    69374461    rs2062547    G    C    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288025    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
16    69375658    rs8053850    G    A    806.44    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.406;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-2.425;QD=15.81;ReadPosRankSum=-1.463;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMED6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288025    GT:AD:DP:GQ:PL    0/1:24,27:51:99:836,0,833
16    69385426    rs72795299    G    A    579.42    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=70;Dels=0.0;FS=13.359;HRun=0;HaplotypeScore=3.6985;MQ=59.16;MQ0=0;MQRankSum=-2.183;QD=8.28;ReadPosRankSum=2.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TERF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254942    GT:AD:DP:GQ:PL    0/1:44,26:70:99:609,0,1259
16    69395434    rs251796    A    G    865.98    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=3.887;DB;DP=43;Dels=0.0;FS=2.776;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=1.702;QD=20.14;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TERF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254942    GT:AD:DP:GQ:PL    0/1:17,26:43:99:896,0,416
16    69689350    rs2304526    A    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349945    GT:AD:DP:GQ:PL    0/1:2,2:4:69.92:72,0,70
16    69704090    rs56046919    T    TA    478.68    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.525;DB;DP=40;FS=7.555;HRun=8;HaplotypeScore=205.4755;IndelType=I;MQ=54.88;MQ0=0;MQRankSum=-0.974;QD=11.97;ReadPosRankSum=0.809;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349945    GT:AD:DP:GQ:PL    0/1:23,17:40:99:518,0,362
16    69704122    rs72523664    C    CTG    2238.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=147.3101;IndelType=I;MQ=53.77;MQ0=0;QD=54.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349945    GT:AD:DP:GQ:PL    1/1:7,33:41:99:2281,123,0
16    69704204    rs34536141    CT    C    1181.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=7;HaplotypeScore=193.5838;IndelType=D;MQ=56.11;MQ0=0;QD=24.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349945    GT:AD:DP:GQ:PL    1/1:6,42:48:99:1224,120,0
16    69704342    rs7192380    T    C    106.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349945    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
16    69718972    rs9934681    C    T    152.01    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.658;QD=8.94;ReadPosRankSum=-1.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349945    GT:AD:DP:GQ:PL    0/1:11,6:17:99:182,0,408
16    69719009    rs72783121    G    A    224.93    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=24.99;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349945    GT:AD:DP:GQ:PL    0/1:2,7:9:54.87:255,0,55
16    69752373    rs689453    C    T    654.30    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.101;DB;DP=64;Dels=0.0;FS=1.002;HRun=1;HaplotypeScore=1.9663;MQ=60.0;MQ0=0;MQRankSum=0.057;QD=10.22;ReadPosRankSum=-1.193;SNPEFF_AMINO_ACID_CHANGE=E24;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69752273_69752437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320623    GT:AD:DP:GQ:PL    0/1:37,27:64:99:684,0,1157
16    69752464    rs689452    C    G    455.15    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.086;DB;DP=35;Dels=0.0;FS=1.431;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=13.0;ReadPosRankSum=0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NQO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320623    GT:AD:DP:GQ:PL    0/1:18,17:35:99:485,0,460
16    69790583    rs75398372    G    A    604.73    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.121;DB;DP=47;Dels=0.0;FS=2.834;HRun=3;HaplotypeScore=1.6642;MQ=58.01;MQ0=0;MQRankSum=0.407;QD=12.87;ReadPosRankSum=0.913;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268802    GT:AD:DP:GQ:PL    0/1:25,22:47:99:635,0,764
16    69791266    rs3811349    T    G    366.36    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.25;MQ0=0;MQRankSum=-0.849;QD=13.57;ReadPosRankSum=-2.495;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268802    GT:AD:DP:GQ:PL    0/1:13,14:27:99:396,0,418
16    69873992    rs2291959    T    G    1442.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1475,123,0
16    69874198    rs2291960    C    T    551.64    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=3.663;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=19.02;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    0/1:11,18:29:99:582,0,287
16    69876164    rs9940315    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    69942608    rs35094061    AG    A    930.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=4;HaplotypeScore=66.4883;IndelType=D;MQ=59.95;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,27:27:81.25:973,81,0
16    69963355    rs1566452    G    A    1007.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.917;QD=29.62;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=K297;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69963351_69963432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542271    GT:AD:DP:GQ:PL    1/1:1,33:34:81.24:1040,81,0
16    69964374    rs4985460    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    69965024    rs2270840    A    T    1956.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1989,147,0
16    69965281    rs8052727    T    G    438.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:471,39,0
16    69965592    rs2291961    A    G    1012.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1045,81,0
16    69967093    rs2102066    G    A    114.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:147,12,0
16    69967732    rs8047818    G    A    281.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
16    69967897    rs2270841    T    C    2040.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=H130;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69967873_69968032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545099    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2073,156,0
16    69968201    rs8048678    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    69970000    rs2270842    T    G    738.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:772,63,0
16    69970329    rs1983016    A    G    1046.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=T258;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69970215_69970355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545099    GT:AD:DP:GQ:PL    1/1:0,33:33:81.25:1079,81,0
16    69970529    rs904803    A    G    109.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:142,12,0
16    69973127    rs2270843    A    G    393.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:426,33,0
16    69973655    rs4985461    C    G    152.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356003    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
16    69985383    .    G    A    452.90    MQFilter40    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8154;MQ=20.87;MQ0=28;MQRankSum=-0.147;QD=3.77;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=P38;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_69985161_69985393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288040    GT:AD:DP:GQ:PL    0/1:76,44:120:99:483,0,1133
16    69996985    .    G    C    232.28    MQFilter40    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.39;MQ0=10;MQRankSum=-0.787;QD=2.83;ReadPosRankSum=-0.496;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545150    GT:AD:DP:GQ:PL    0/1:59,22:82:99:262,0,970
16    70010458    rs3206834    G    A    4977.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.9799;MQ=46.37;MQ0=0;QD=28.77;SNPEFF_AMINO_ACID_CHANGE=L274F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70010291_70010635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532298    GT:AD:DP:GQ:PL    1/1:0,173:173:99:4978,430,0
16    70010589    rs62050636    T    C    1431.36    FSFilter60;MQFilter40    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.522;DB;DP=165;Dels=0.0;FS=134.169;HRun=0;HaplotypeScore=3.8284;MQ=24.33;MQ0=28;MQRankSum=1.828;QD=8.67;ReadPosRankSum=1.99;SNPEFF_AMINO_ACID_CHANGE=Y230C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70010291_70010635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000532298    GT:AD:DP:GQ:PL    0/1:84,81:165:99:1461,0,840
16    70010646    .    G    A    630.92    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.514;DP=111;Dels=0.0;FS=58.636;HRun=2;HaplotypeScore=0.9469;MQ=34.03;MQ0=1;MQRankSum=-2.083;QD=5.68;ReadPosRankSum=-0.496;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    0/1:71,40:111:99:661,0,1399
16    70010650    .    A    G    540.22    MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=3.692;DP=102;Dels=0.0;FS=43.957;HRun=1;HaplotypeScore=0.9469;MQ=34.81;MQ0=1;MQRankSum=-1.582;QD=5.3;ReadPosRankSum=0.236;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    0/1:69,33:102:99:570,0,1428
16    70011298    rs117345837    T    C    566.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.93;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:599,45,0
16    70011361    rs140336246    A    G    443.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=22.79;MQ0=17;QD=13.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:5,27:32:39.12:476,39,0
16    70011737    .    T    C    74.15    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.12;MQ0=58;QD=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:41,21:62:9.03:106,9,0
16    70011854    .    T    C    968.13    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.93;MQ0=3;MQRankSum=1.636;QD=24.82;ReadPosRankSum=-0.963;SNPEFF_AMINO_ACID_CHANGE=K224R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70011775_70011948;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:2,37:39:90.25:1001,90,0
16    70011947    .    C    CTA    3051.71    PASS    AC=2;AF=1.00;AN=2;DP=64;FS=0.0;HRun=0;HaplotypeScore=179.8416;IndelType=I;MQ=35.2;MQ0=0;QD=46.95;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_70011775_70011948;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:15,46:64:99:3094,166,0
16    70012342    rs62050640    T    C    583.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.62;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,21:21:54.14:616,54,0
16    70012447    rs62050641    C    T    70.28    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.9;MQ0=0;MQRankSum=0.731;QD=14.06;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    0/1:1,4:5:17.59:100,0,18
16    70012948    rs62050643    T    C    83.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.25;MQ0=1;QD=5.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,15:15:9.03:115,9,0
16    70029924    rs62051314    T    C    851.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.1;MQ0=5;QD=22.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,38:38:75.22:884,75,0
16    70030103    rs62051315    G    A    1977.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.24;MQ0=0;QD=34.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532298    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2010,153,0
16    70030496    rs62051316    A    G    155.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.09;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:188,15,0
16    70045748    rs929843    A    C    823.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.449;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.75;MQ0=1;MQRankSum=-0.321;QD=28.39;ReadPosRankSum=0.064;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_70045744_70045832;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:1,28:29:38.22:856,38,0
16    70045816    rs929842    G    A    802.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.12;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.82;MQ0=1;MQRankSum=-1.289;QD=25.06;ReadPosRankSum=0.457;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_70045744_70045832;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:2,30:32:34.86:835,35,0
16    70045828    rs929841    T    C    712.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=44.62;MQ0=1;MQRankSum=-0.433;QD=25.43;ReadPosRankSum=0.289;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_70045744_70045832;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:1,27:28:30.94:745,31,0
16    70045908    rs929840    C    A    441.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.58;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:475,36,0
16    70051916    rs1833934    G    A    1025.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.28;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,35:35:84.23:1059,84,0
16    70051945    rs2303181    C    T    1510.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.83;MQ0=0;QD=29.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1544,117,0
16    70068086    rs34921671    G    C    2828.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.338;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8936;MQ=49.44;MQ0=5;MQRankSum=-1.142;QD=29.77;ReadPosRankSum=1.693;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_70068074_70068263;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:5,90:95:99:2861,191,0
16    70070119    rs3762176    G    A    99.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.72;MQ0=1;QD=19.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:132,12,0
16    70070254    rs147056548    G    C    547.28    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=47;Dels=0.0;FS=1.954;HRun=0;HaplotypeScore=0.8667;MQ=48.44;MQ0=0;MQRankSum=0.358;QD=11.64;ReadPosRankSum=1.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    0/1:28,19:47:99:577,0,883
16    70073067    rs4985389    A    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
16    70076479    rs143666377    G    A    139.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.0;MQ0=0;QD=13.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:0,10:10:18.01:173,18,0
16    70076912    rs71385635    GA    G    168.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=68.678;IndelType=D;MQ=45.46;MQ0=0;QD=11.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-419C5.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325845    GT:AD:DP:GQ:PL    1/1:3,11:14:31.76:210,32,0
16    70154204    rs4985501    T    C    117.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.77;MQ0=1;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:150,12,0
16    70154480    .    A    G    235.40    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.172;DP=99;Dels=0.0;FS=14.147;HRun=0;HaplotypeScore=0.0;MQ=52.4;MQ0=6;MQRankSum=-6.596;QD=2.38;ReadPosRankSum=-1.34;SNPEFF_AMINO_ACID_CHANGE=T29A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70154364_70154622;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:71,27:99:99:265,0,2188
16    70160994    rs62050961    T    C    281.41    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.46;MQ0=0;MQRankSum=-1.247;QD=17.59;ReadPosRankSum=-1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:6,10:16:99:311,0,199
16    70161013    rs28556668    C    T    276.67    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.47;MQ0=0;MQRankSum=-0.292;QD=9.54;ReadPosRankSum=-0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:18,11:29:99:307,0,637
16    70161263    rs2549532    T    C    2215.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.08;MQ0=50;QD=14.97;SNPEFF_AMINO_ACID_CHANGE=Y10H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70161163_70161296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398122    GT:AD:DP:GQ:PL    1/1:0,147:147:99:2248,210,0
16    70161414    rs112103716    C    A    144.16    PASS    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=3.584;DB;DP=50;Dels=0.0;FS=7.597;HRun=0;HaplotypeScore=0.0;MQ=41.27;MQ0=0;MQRankSum=0.69;QD=2.88;ReadPosRankSum=-0.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:42,8:50:99:174,0,1188
16    70162581    rs140558805    TC    T    602.03    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=3.974;DB;DP=59;FS=0.0;HRun=3;HaplotypeScore=169.099;IndelType=D;MQ=42.68;MQ0=1;MQRankSum=1.042;QD=10.03;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:38,22:59:99:641,0,1403
16    70164115    rs62050964    G    A    37.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.49;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:67,0,31
16    70164248    rs7206450    T    C    1462.30    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=1.894;DB;DP=82;Dels=0.01;FS=1.587;HRun=1;HaplotypeScore=2.8098;MQ=55.34;MQ0=0;MQRankSum=-0.984;QD=17.62;ReadPosRankSum=2.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:35,47:82:99:1492,0,1180
16    70164334    rs10852462    A    G    2559.08    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.455;DB;DP=167;Dels=0.0;FS=1.294;HRun=1;HaplotypeScore=1.7333;MQ=59.02;MQ0=0;MQRankSum=-0.664;QD=15.32;ReadPosRankSum=0.889;SNPEFF_AMINO_ACID_CHANGE=I106V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70164326_70164447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398122    GT:AD:DP:GQ:PL    0/1:80,87:167:99:2589,0,2427
16    70164741    rs2549541    T    C    343.28    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.301;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.66;MQ0=1;MQRankSum=-1.411;QD=4.83;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:53,18:71:99:373,0,1685
16    70165439    rs62050965    C    T    511.75    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.313;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=40.79;MQ0=6;MQRankSum=0.527;QD=9.66;ReadPosRankSum=-0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:33,20:53:99:542,0,788
16    70165793    rs4985507    G    C    1947.03    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=3.709;DB;DP=140;Dels=0.0;FS=5.574;HRun=0;HaplotypeScore=2.8924;MQ=49.31;MQ0=0;MQRankSum=-1.906;QD=13.91;ReadPosRankSum=-2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288050    GT:AD:DP:GQ:PL    0/1:70,69:140:99:1977,0,2192
16    70165914    rs2113175    T    C    921.06    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.882;DB;DP=133;Dels=0.0;FS=24.513;HRun=0;HaplotypeScore=1.9092;MQ=40.55;MQ0=2;MQRankSum=-2.468;QD=6.93;ReadPosRankSum=0.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:87,46:133:99:951,0,2389
16    70166225    rs2549550    C    A    1377.49    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=6.761;DB;DP=168;DS;Dels=0.0;FS=2.811;HRun=0;HaplotypeScore=2.2566;MQ=52.98;MQ0=1;MQRankSum=-0.722;QD=8.2;ReadPosRankSum=-1.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:113,55:168:99:1407,0,3275
16    70170004    rs8045700    C    A    159.29    MQFilter40    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.1557;MQ=39.09;MQ0=0;MQRankSum=-0.755;QD=7.96;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:10,9:20:99:189,0,216
16    70170016    rs8045569    A    G    236.65    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.5016;MQ=36.58;MQ0=2;MQRankSum=-0.465;QD=8.76;ReadPosRankSum=0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:14,12:27:99:267,0,213
16    70170222    rs59034887    G    T    270.16    PASS    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=2.744;DB;DP=89;Dels=0.0;FS=11.976;HRun=1;HaplotypeScore=0.7887;MQ=44.88;MQ0=0;MQRankSum=0.177;QD=3.04;ReadPosRankSum=0.063;SNPEFF_AMINO_ACID_CHANGE=V103L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70170097_70170289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:75,14:89:99:300,0,2410
16    70172773    rs114934918    G    A    415.77    QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=229;Dels=0.0;FS=0.76;HRun=1;HaplotypeScore=2.8251;MQ=43.46;MQ0=0;MQRankSum=0.586;QD=1.82;ReadPosRankSum=0.995;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:193,36:229:99:446,0,5646
16    70172890    rs142218067    C    T    219.63    MQFilter40;QDFilter2    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=6.155;DB;DP=181;DS;Dels=0.0;FS=3.479;HRun=0;HaplotypeScore=3.2933;MQ=21.26;MQ0=46;MQRankSum=0.108;QD=1.21;ReadPosRankSum=-1.11;SNPEFF_AMINO_ACID_CHANGE=R155C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70172802_70172926;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:152,29:181:99:250,0,1937
16    70176076    rs2549125    G    T    225.87    QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.222;DB;DP=145;Dels=0.0;FS=1.332;HRun=1;HaplotypeScore=2.1445;MQ=55.33;MQ0=1;MQRankSum=-5.046;QD=1.56;ReadPosRankSum=-1.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:117,28:145:99:256,0,3525
16    70176321    rs113493832    CT    C    83.63    QDFilter2    AB=0.886;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=115;FS=8.465;HRun=14;HaplotypeScore=594.1167;IndelType=D;MQ=49.93;MQ0=0;MQRankSum=1.005;QD=0.67;ReadPosRankSum=1.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:101,13:115:99:123,0,1459
16    70176740    rs11866642    A    G    47.04    QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=2.858;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.45;MQ0=0;MQRankSum=-0.202;QD=1.62;ReadPosRankSum=0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:24,5:29:77.03:77,0,853
16    70177577    rs2303198    G    A    455.52    MQFilter40    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.936;DB;DP=76;Dels=0.0;FS=2.542;HRun=0;HaplotypeScore=1.8628;MQ=36.48;MQ0=5;MQRankSum=-1.494;QD=5.99;ReadPosRankSum=1.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:47,29:76:99:486,0,1031
16    70177618    rs7191901    G    A    433.33    MQFilter40    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.069;DB;DP=45;Dels=0.0;FS=1.773;HRun=0;HaplotypeScore=0.0;MQ=36.74;MQ0=3;MQRankSum=-4.697;QD=9.63;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:16,29:45:99:463,0,479
16    70177648    rs2303200    G    A    369.37    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.49;MQ0=0;MQRankSum=-2.917;QD=13.19;ReadPosRankSum=0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:11,17:28:99:399,0,333
16    70182325    rs55843501    T    C    421.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.1;MQ0=6;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    1/1:0,21:21:39.09:455,39,0
16    70182375    rs62050977    T    C    223.47    MQFilter40    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.907;DB;DP=48;Dels=0.0;FS=3.986;HRun=0;HaplotypeScore=0.0;MQ=37.71;MQ0=6;MQRankSum=-2.241;QD=4.66;ReadPosRankSum=-0.153;SNPEFF_AMINO_ACID_CHANGE=S2;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70182367_70182456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542659    GT:AD:DP:GQ:PL    0/1:34,14:48:99:253,0,868
16    70182390    rs62050978    T    G    370.29    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=54;Dels=0.0;FS=14.828;HRun=3;HaplotypeScore=0.0;MQ=40.0;MQ0=5;MQRankSum=-2.267;QD=6.86;ReadPosRankSum=-0.236;SNPEFF_AMINO_ACID_CHANGE=N390K;SNPEFF_CODON_CHANGE=aaT/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70182367_70182456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:34,20:54:99:400,0,801
16    70182489    rs145754705    ACTTCCCTTCC    A    477.12    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=338.3967;IndelType=D;MQ=48.65;MQ0=1;MQRankSum=-0.4;QD=12.56;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:26,12:37:99:516,0,1468
16    70187164    rs63048564    G    A    1177.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    1/1:0,36:36:90.30:1211,90,0
16    70187270    rs2287980    T    G    1651.37    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.005;DB;DP=161;Dels=0.0;FS=2.655;HRun=1;HaplotypeScore=0.9469;MQ=59.86;MQ0=0;MQRankSum=0.567;QD=10.26;ReadPosRankSum=0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:103,58:161:99:1681,0,3255
16    70187550    rs2287981    A    T    559.09    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.936;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.063;QD=16.94;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:16,17:33:99:589,0,518
16    70190401    rs6499302    C    T    4644.94    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.084;DB;DP=224;Dels=0.0;FS=6.555;HRun=0;HaplotypeScore=3.5171;MQ=59.59;MQ0=0;MQRankSum=1.452;QD=20.74;ReadPosRankSum=-0.906;SNPEFF_AMINO_ACID_CHANGE=D420;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70190378_70190765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:79,145:224:99:4645,0,2285
16    70191029    rs4985509    T    G    2000.68    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=3.284;DB;DP=100;Dels=0.0;FS=4.667;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-1.41;QD=20.01;ReadPosRankSum=1.097;SNPEFF_AMINO_ACID_CHANGE=F567C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70190954_70191075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:38,62:100:99:2031,0,1102
16    70191161    rs11647087    C    T    452.35    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=3.258;DB;DP=20;Dels=0.0;FS=3.299;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.701;QD=22.62;ReadPosRankSum=0.701;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:6,14:20:99:482,0,147
16    70191237    rs2287982    G    A    50.19    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.27;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205055    GT:AD:DP:GQ:PL    0/1:5,3:8:80.18:80,0,183
16    70211226    rs150357848    T    C    277.19    MQFilter40    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=80;Dels=0.0;FS=8.443;HRun=2;HaplotypeScore=7.7674;MQ=18.94;MQ0=28;MQRankSum=-2.195;QD=3.46;ReadPosRankSum=0.405;SNPEFF_AMINO_ACID_CHANGE=L100P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70211144_70211383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314151    GT:AD:DP:GQ:PL    0/1:40,39:80:99:307,0,378
16    70211290    rs76842247    T    C    539.06    MQFilter40    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.625;DB;DP=92;Dels=0.0;FS=2.043;HRun=0;HaplotypeScore=0.9933;MQ=25.53;MQ0=9;MQRankSum=-4.686;QD=5.86;ReadPosRankSum=0.443;SNPEFF_AMINO_ACID_CHANGE=L118S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70211265_70211297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539438    GT:AD:DP:GQ:PL    0/1:53,38:92:99:569,0,954
16    70219659    .    G    A    40.20    MQFilter40;QDFilter2    AB=0.095;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.98;MQ0=11;MQRankSum=-0.751;QD=1.91;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314151    GT:AD:DP:GQ:PL    0/1:2,19:21:10.68:70,0,11
16    70219914    .    T    C    69.22    MQFilter40    AC=2;AF=1.00;AN=2;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=15.08;MQ0=10;QD=3.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314151    GT:AD:DP:GQ:PL    1/1:1,19:20:11.99:102,12,0
16    70287177    rs4081753    A    G    540.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=27.01;SNPEFF_AMINO_ACID_CHANGE=V905;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70287171_70287284;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261772    GT:AD:DP:GQ:PL    1/1:0,20:20:45.13:573,45,0
16    70292744    rs7186104    T    C    172.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=28.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261772    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:205,15,0
16    70292798    rs67112563    CAG    C    339.69    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=1.936;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=80.6044;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=2.007;QD=16.18;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261772    GT:AD:DP:GQ:PL    0/1:11,10:21:99:379,0,555
16    70302034    rs62049419    G    T    69.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.0;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261772    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,148
16    70303580    rs2070203    G    A    4661.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.346;MQ=59.52;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=H301;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70303521_70303666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AARS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261772    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4661,343,0
16    70365466    rs74954378    G    A    39.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.93;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX19B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288071    GT:AD:DP:GQ:PL    0/1:2,2:4:58.09:70,0,58
16    70367494    .    A    C    58.74    FSFilter60;QDFilter2    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.159;DP=164;Dels=0.0;FS=79.156;HRun=2;HaplotypeScore=11.7774;MQ=42.32;MQ0=6;MQRankSum=0.247;QD=0.36;ReadPosRankSum=2.256;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX19B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288071    GT:AD:DP:GQ:PL    0/1:83,80:164:88.73:89,0,1932
16    70395387    rs1134074    C    T    522.29    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=4.158;DB;DP=51;Dels=0.0;FS=1.228;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.646;QD=10.24;ReadPosRankSum=-0.743;SNPEFF_AMINO_ACID_CHANGE=N120;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70395321_70395413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX19A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302243    GT:AD:DP:GQ:PL    0/1:31,20:51:99:552,0,886
16    70398634    .    G    A    125.84    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DP=11;Dels=0.0;FS=3.522;HRun=2;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=11.44;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX19A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302227    GT:AD:DP:GQ:PL    0/1:6,5:11:99:156,0,176
16    70400857    rs8058224    A    G    333.72    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=3.927;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=56.09;MQ0=0;MQRankSum=0.831;QD=10.11;ReadPosRankSum=-0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX19A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302227    GT:AD:DP:GQ:PL    0/1:17,16:33:99:364,0,547
16    70405898    .    A    C    80.34    FSFilter60;QDFilter2    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.578;DP=172;Dels=0.0;FS=108.445;HRun=2;HaplotypeScore=12.8395;MQ=44.08;MQ0=3;MQRankSum=-2.084;QD=0.47;ReadPosRankSum=3.139;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX19A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302227    GT:AD:DP:GQ:PL    0/1:88,84:172:99:110,0,2227
16    70422231    rs4985526    C    T    1259.30    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.643;DB;DP=104;Dels=0.0;FS=5.87;HRun=1;HaplotypeScore=5.3882;MQ=59.56;MQ0=0;MQRankSum=0.143;QD=12.11;ReadPosRankSum=-0.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST3GAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342907    GT:AD:DP:GQ:PL    0/1:59,45:104:99:1289,0,1750
16    70502493    rs12445830    G    A    118.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428974    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
16    70502610    rs12446395    C    G    844    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-1.445;QD=35.17;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428974    GT:AD:DP:GQ:PL    1/1:1,23:24:31:877,31,0
16    70506907    rs7192865    T    C    69.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.18;SNPEFF_AMINO_ACID_CHANGE=P476;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70506886_70507256;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288078    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
16    70514828    rs7919    A    C    727.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288078    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:760,57,0
16    70515355    rs11054    C    T    1932.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=58.52;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=S170;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70515262_70515390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526700    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1966,156,0
16    70515600    rs6416698    T    G    358.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288078    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:392,33,0
16    70516109    rs12447090    G    A    316.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288078    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:350,27,0
16    70548297    rs3931036    G    A    1031.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_AMINO_ACID_CHANGE=T158I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70548238_70548412;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338984    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1064,78,0
16    70563087    rs76371422    C    G    82.80    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.64;DB;DP=32;Dels=0.0;FS=27.724;HRun=3;HaplotypeScore=8.2338;MQ=49.09;MQ0=0;MQRankSum=-3.775;QD=2.59;ReadPosRankSum=1.462;SNPEFF_AMINO_ACID_CHANGE=R128G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70562776_70563102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302516    GT:AD:DP:GQ:PL    0/1:17,14:32:99:113,0,419
16    70693872    rs67512302    C    CT    1474.57    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=203;FS=0.0;HRun=11;HaplotypeScore=876.7695;IndelType=I;MQ=57.79;MQ0=0;MQRankSum=-0.789;QD=7.23;ReadPosRankSum=0.335;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254951    GT:AD:DP:GQ:PL    0/1:125,72:203:99:1514,0,1723
16    70698313    .    T    C    233.67    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.865;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.471;QD=16.69;ReadPosRankSum=1.625;SNPEFF_AMINO_ACID_CHANGE=D504G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70697580_70698352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338779    GT:AD:DP:GQ:PL    0/1:6,8:14:99:264,0,171
16    70708165    .    G    A    37.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=63.51;MQ0=0;MQRankSum=0.736;QD=12.59;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254951    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:68,0,32
16    70712109    .    T    G    755.24    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.911;DP=54;Dels=0.0;FS=1.124;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.063;QD=13.99;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254951    GT:AD:DP:GQ:PL    0/1:24,30:54:99:785,0,669
16    70713047    rs35566469    A    G    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTSS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    70726795    rs2278983    C    A    294.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_AMINO_ACID_CHANGE=P137;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70726724_70726874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAC14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536184    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
16    70726940    rs2278984    G    C    76.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.23;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261776    GT:AD:DP:GQ:PL    0/1:2,3:5:68.41:106,0,68
16    70731302    rs2242126    G    A    90.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261776    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    70732483    rs7201952    G    A    631.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261776    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:665,51,0
16    70732761    rs9673700    G    C    245.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261776    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:279,21,0
16    70796515    rs2305689    G    A    191.51    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.597;QD=15.96;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398177    GT:AD:DP:GQ:PL    0/1:5,7:12:82.87:221,0,83
16    70796535    rs2305690    C    T    113.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=10.35;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020763.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398177    GT:AD:DP:GQ:PL    0/1:5,5:11:99:144,0,127
16    70816893    rs1875941    C    T    873.38    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=52;Dels=0.0;FS=4.119;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.32;QD=16.8;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261776    GT:AD:DP:GQ:PL    0/1:19,31:52:99:903,0,569
16    70818759    rs2271047    A    G    1222.60    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.581;DB;DP=82;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.6208;MQ=59.72;MQ0=0;MQRankSum=-1.951;QD=14.91;ReadPosRankSum=-1.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261776    GT:AD:DP:GQ:PL    0/1:40,42:82:99:1253,0,1328
16    70934817    rs71246958    CTGTG    C    156.23    PASS    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.812;DB;DP=40;FS=1.976;HRun=0;HaplotypeScore=238.4827;IndelType=D;MQ=40.52;MQ0=3;MQRankSum=0.588;QD=2.89;ReadPosRankSum=0.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYDIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316490    GT:AD:DP:GQ:PL    0/1:37,7:40:99:195,0,1068
16    70954915    rs1798531    G    T    332.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.5;MQ0=25;QD=7.08;SNPEFF_AMINO_ACID_CHANGE=P2454Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70954494_70955120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYDIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316490    GT:AD:DP:GQ:PL    1/1:0,47:47:36.05:366,36,0
16    70972595    rs2502726    T    C    200.01    MQFilter40    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=40;Dels=0.0;FS=4.222;HRun=1;HaplotypeScore=0.0;MQ=26.1;MQ0=8;MQRankSum=-0.923;QD=5.0;ReadPosRankSum=-2.167;SNPEFF_AMINO_ACID_CHANGE=E2305G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_70972517_70972658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYDIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316490    GT:AD:DP:GQ:PL    0/1:22,18:40:99:230,0,335
16    71007657    rs783761    G    A    38.10    MQFilter40    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.75;MQ0=7;MQRankSum=0.55;QD=2.54;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYDIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316490    GT:AD:DP:GQ:PL    0/1:7,8:15:14.67:68,0,15
16    71015329    rs78763837    G    T    725.97    MQFilter40    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.106;DB;DP=76;Dels=0.0;FS=9.963;HRun=0;HaplotypeScore=2.6744;MQ=28.34;MQ0=11;MQRankSum=-0.462;QD=9.55;ReadPosRankSum=-1.497;SNPEFF_AMINO_ACID_CHANGE=P1491H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_71015294_71015471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYDIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316490    GT:AD:DP:GQ:PL    0/1:31,45:76:99:756,0,507
16    71026137    rs145870479    TA    T    566.01    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=3.814;DB;DP=32;FS=3.952;HRun=2;HaplotypeScore=88.9063;IndelType=D;MQ=30.39;MQ0=8;MQRankSum=-2.606;QD=12.58;ReadPosRankSum=0.982;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYDIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316490    GT:AD:DP:GQ:PL    0/1:26,19:32:99:605,0,576
16    71100838    rs74361942    T    C    1377.11    MQFilter40    AB=0.317;AC=1;AF=0.50;AN=2;BaseQRankSum=1.593;DB;DP=83;Dels=0.0;FS=3.21;HRun=1;HaplotypeScore=0.9734;MQ=31.85;MQ0=1;MQRankSum=0.106;QD=16.59;ReadPosRankSum=-1.067;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HYDIN;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000393550    GT:AD:DP:GQ:PL    0/1:26,56:83:99:1407,0,460
16    71319539    rs3826247    C    T    2216.39    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DB;DP=67;Dels=0.0;FS=3.637;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-1.37;QD=33.08;ReadPosRankSum=-1.37;SNPEFF_AMINO_ACID_CHANGE=A95;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_71316203_71319842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338099    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2249,138,0
16    71319646    rs3096380    G    A    2196.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5115;MQ=59.62;MQ0=0;QD=36.01;SNPEFF_AMINO_ACID_CHANGE=L60F;SNPEFF_CODON_CHANGE=Ctt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_71316203_71319842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338099    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2230,169,0
16    71319986    rs10775325    C    T    160.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338099    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
16    71406249    rs8061026    A    T    317.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:351,27,0
16    71406361    rs4788797    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    71408475    rs12444419    T    G    85.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
16    71408527    rs8046337    A    G    130.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:163,15,0
16    71411446    rs12445308    G    T    394.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:427,33,0
16    71417763    rs12597011    A    G    578.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.39;MQ0=0;MQRankSum=0.501;QD=15.23;ReadPosRankSum=-1.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    0/1:19,19:38:99:609,0,615
16    71418291    rs41280904    T    C    499.27    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.907;DB;DP=45;Dels=0.0;FS=2.704;HRun=0;HaplotypeScore=0.9993;MQ=59.49;MQ0=0;MQRankSum=-1.786;QD=11.09;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    0/1:24,21:45:99:529,0,657
16    71418554    .    A    AT    129.99    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DP=13;FS=0.0;HRun=0;HaplotypeScore=586.4449;IndelType=I;MQ=32.45;MQ0=0;MQRankSum=-0.717;QD=10.0;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    0/1:5,6:13:52.78:169,0,53
16    71418573    rs150813562    A    C    66.17    HaplotypeScoreFilter13;MQFilter40    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=24;Dels=0.0;FS=5.836;HRun=1;HaplotypeScore=17.448;MQ=30.92;MQ0=0;MQRankSum=-0.805;QD=2.76;ReadPosRankSum=-1.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    0/1:6,17:24:69.63:96,0,70
16    71418582    rs144836690    T    C    64.48    HaplotypeScoreFilter13;MQFilter40    AB=0.087;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.164;DB;DP=24;Dels=0.04;FS=10.607;HRun=1;HaplotypeScore=66.6445;MQ=30.84;MQ0=0;MQRankSum=-1.364;QD=2.58;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    0/1:2,21:24:25:94,0,25
16    71418586    rs144263868    ACATG    A    841.53    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=25;FS=9.777;HRun=0;HaplotypeScore=863.6961;IndelType=D;MQ=30.84;MQ0=0;MQRankSum=-1.542;QD=33.66;ReadPosRankSum=0.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302628    GT:AD:DP:GQ:PL    0/1:9,16:25:17.15:881,0,17
16    71419595    rs4327058    A    G    839.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490520    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:873,66,0
16    71423906    rs8063760    T    C    316.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467817    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:350,30,0
16    71509779    rs10500557    C    T    199.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=20;Dels=0.0;FS=4.481;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.042;QD=9.95;ReadPosRankSum=-0.039;SNPEFF_AMINO_ACID_CHANGE=R224Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_71507486_71510175;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288177    GT:AD:DP:GQ:PL    0/1:12,8:20:99:229,0,380
16    71668634    rs12932850    T    G    503.17    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.011;QD=10.27;ReadPosRankSum=-0.119;SNPEFF_AMINO_ACID_CHANGE=A378;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_71668096_71670368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268485    GT:AD:DP:GQ:PL    0/1:29,20:49:99:533,0,802
16    71668800    rs7206470    G    A    566.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540628    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:599,45,0
16    71674882    rs2303225    C    G    360.83    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=26;Dels=0.0;FS=1.685;HRun=2;HaplotypeScore=2.8271;MQ=60.0;MQ0=0;MQRankSum=-0.334;QD=13.88;ReadPosRankSum=-1.054;SNPEFF_AMINO_ACID_CHANGE=R767P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_71674803_71674943;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    0/1:12,14:26:99:391,0,287
16    71675136    rs8058188    G    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268485    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
16    71678663    rs3752681    T    C    987.99    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=54;Dels=0.0;FS=2.02;HRun=0;HaplotypeScore=0.9998;MQ=59.65;MQ0=0;MQRankSum=0.367;QD=18.3;ReadPosRankSum=0.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299952    GT:AD:DP:GQ:PL    0/1:23,31:54:99:1018,0,794
16    71678679    rs7204608    G    C    2466.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=35.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299952    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2500,187,0
16    71678932    rs8203    T    C    32.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=5.35;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARVELD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299952    GT:AD:DP:GQ:PL    0/1:3,3:6:62.06:62,0,105
16    71682698    .    G    T    296.53    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=3.873;DP=31;Dels=0.0;FS=3.078;HRun=0;HaplotypeScore=4.1844;MQ=57.73;MQ0=0;MQRankSum=1.076;QD=9.57;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    0/1:20,11:31:99:327,0,402
16    71688977    rs2052584    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    71692443    rs2303224    A    G    271.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.706;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.088;QD=15.08;ReadPosRankSum=1.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    0/1:9,9:18:99:302,0,300
16    71697752    rs1035545    T    C    187.16    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.074;QD=14.4;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    0/1:6,7:13:99:217,0,215
16    71701248    rs1423983    G    A    1057.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    1/1:0,32:33:81.24:1091,81,0
16    71702975    rs11075895    C    T    93.29    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=18.66;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    0/1:1,4:5:27.20:123,0,27
16    71703436    rs2032918    T    G    65.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:97,9,0
16    71712462    rs9927437    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    71715378    rs6499529    C    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    71715915    rs11439127    G    GA    359.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=8;HaplotypeScore=38.7211;IndelType=I;MQ=60.0;MQ0=0;QD=25.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    1/1:2,11:14:36.07:402,36,0
16    71718366    rs7195059    C    T    1779.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1812,135,0
16    71724369    rs12448022    T    C    570.25    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.009;DB;DP=39;Dels=0.0;FS=4.639;HRun=0;HaplotypeScore=0.734;MQ=56.95;MQ0=0;MQRankSum=1.564;QD=14.62;ReadPosRankSum=1.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    0/1:20,19:39:99:600,0,605
16    71736359    rs17356206    G    C    114.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.35;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    0/1:4,4:8:99:145,0,142
16    71736702    rs10626314    G    GTATTTT    523.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=30.1422;IndelType=I;MQ=50.33;MQ0=0;QD=65.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299971    GT:AD:DP:GQ:PL    1/1:0,7:8:24.08:566,24,0
16    71768500    rs2278031    T    C    1859.44    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.719;DB;DP=175;Dels=0.0;FS=10.943;HRun=0;HaplotypeScore=2.1567;MQ=59.87;MQ0=0;MQRankSum=-0.898;QD=10.63;ReadPosRankSum=1.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:106,69:175:99:1889,0,3234
16    71772795    rs904764    G    A    805.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.03;FS=0.0;HRun=10;HaplotypeScore=0.734;MQ=59.23;MQ0=0;QD=26.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:839,72,0
16    71773284    rs71389699    C    CA    269.78    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.839;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=39.5953;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=15.87;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:9,8:17:99:309,0,295
16    71780485    rs2270832    G    A    469.23    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.711;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.387;QD=13.41;ReadPosRankSum=1.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:19,16:35:99:499,0,584
16    71780599    rs2270831    T    C    747.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.373;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9399;MQ=59.13;MQ0=0;MQRankSum=1.181;QD=15.57;ReadPosRankSum=1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:24,24:48:99:777,0,732
16    71784000    rs2270829    A    T    730.72    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.355;DB;DP=41;Dels=0.0;FS=2.681;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=17.82;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:18,23:41:99:761,0,603
16    71787588    rs12920890    G    A    528.21    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.607;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.237;QD=20.32;ReadPosRankSum=-0.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:10,16:26:99:558,0,337
16    71790166    rs8053186    G    A    442.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450149    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:476,36,0
16    71790221    rs8052910    A    G    160.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450149    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:193,15,0
16    71792696    rs12919271    C    A    418.13    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=31;Dels=0.0;FS=5.371;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.758;QD=13.49;ReadPosRankSum=1.674;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450149    GT:AD:DP:GQ:PL    0/1:18,13:31:99:448,0,598
16    71799347    rs12149092    A    G    539.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.032;QD=19.97;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:9,18:27:99:569,0,272
16    71801594    rs12920243    G    C    111.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=12.42;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:5,4:9:99:142,0,127
16    71801946    rs12149533    C    T    138.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.05;MQ0=0;MQRankSum=-0.869;QD=11.53;ReadPosRankSum=2.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:6,6:12:99:168,0,211
16    71801958    rs7192956    T    C    179.43    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.05;MQ0=0;MQRankSum=0.831;QD=14.95;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:5,7:12:99:209,0,171
16    71804956    rs9635524    C    G    280.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:313,24,0
16    71805160    rs4788443    G    A    645.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=26.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    1/1:0,24:24:54.17:679,54,0
16    71808235    rs10083757    C    T    31.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.77;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299980    GT:AD:DP:GQ:PL    0/1:2,2:4:61.07:61,0,63
16    71897926    rs2335714    T    C    933.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF821;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313565    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:966,72,0
16    71899189    rs8052358    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF821;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313565    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    71950201    rs79169855    A    G    31.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.77;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329908    GT:AD:DP:GQ:PL    0/1:2,2:4:61.07:61,0,70
16    71950293    rs12921279    G    A    634.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329908    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:667,51,0
16    71955426    rs56089063    C    CAT    1001.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=47.3391;IndelType=I;MQ=61.69;MQ0=0;QD=52.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424485    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:1043,57,0
16    71956511    rs148848854    AATGCCC    A    1397.97    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=6.386;DB;DP=73;FS=9.508;HRun=0;HaplotypeScore=445.7749;IndelType=D;MQ=52.44;MQ0=0;MQRankSum=-4.816;QD=19.15;ReadPosRankSum=2.03;SNPEFF_AMINO_ACID_CHANGE=MP168-;SNPEFF_CODON_CHANGE=atgccc/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_16_71956377_71956583;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456820    GT:AD:DP:GQ:PL    0/1:45,28:73:99:1437,0,3030
16    71961339    rs3794692    T    C    294.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534994    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
16    71961906    rs3751820    A    G    123.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=30.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535424    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
16    71963186    rs7195988    C    T    53.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329908    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
16    71963924    rs34029919    C    T    800.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.495;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=28.59;ReadPosRankSum=0.619;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329908    GT:AD:DP:GQ:PL    1/1:1,27:28:25.57:833,26,0
16    71967599    rs8063324    T    G    221.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329908    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:254,21,0
16    71967695    rs4788581    T    A    196.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329908    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:229,18,0
16    71967783    rs12445641    C    T    402.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KIAA0174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329908    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:436,33,0
16    71967927    rs17358402    C    T    1324.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1357,99,0
16    71968091    rs12149307    A    C    297.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,13:13:30.06:331,30,0
16    71968147    rs12149325    G    C    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
16    71969497    rs11865456    C    T    1254.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=38.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,33:33:96.29:1288,96,0
16    71971091    rs7191848    T    C    922.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.8;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=57.56;MQ0=0;MQRankSum=1.467;QD=34.15;ReadPosRankSum=0.133;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:1,26:27:72.22:955,72,0
16    71976316    rs141401625    CTT    C    498.34    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=4.392;DB;DP=27;FS=0.0;HRun=4;HaplotypeScore=81.9132;IndelType=D;MQ=60.4;MQ0=0;MQRankSum=0.51;QD=18.46;ReadPosRankSum=1.383;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    0/1:13,14:27:99:537,0,650
16    71978313    rs8049508    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    71981374    rs8050058    T    G    660.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=33.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:694,57,0
16    71981414    .    C    CTTTG    2732.26    PASS    AC=2;AF=1.00;AN=2;DP=38;FS=0.0;HRun=0;HaplotypeScore=167.1356;IndelType=I;MQ=56.52;MQ0=0;QD=71.9;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:2,35:38:99:2774,108,0
16    71981630    rs9934803    T    G    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
16    71981652    rs9934812    T    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    71983929    rs35377660    A    T    1611.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1645,126,0
16    71986764    rs11648353    G    A    151.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:184,15,0
16    71986946    rs7204708    A    G    1538.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=34.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1572,117,0
16    71987044    rs71153686    CAA    C    1015.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=3;HaplotypeScore=92.3873;IndelType=D;MQ=59.48;MQ0=0;QD=39.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:3,23:26:69.23:1057,69,0
16    71987816    rs9889011    T    A    78.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
16    71987851    rs9888748    G    A    173.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
16    71987960    rs34041171    A    AC    1330.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.265;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=242.2682;IndelType=I;MQ=55.62;MQ0=0;MQRankSum=0.714;QD=27.15;ReadPosRankSum=-0.403;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:15,29:49:99:1373,106,0
16    71988106    rs9921412    C    T    2944.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=35.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:1,82:83:99:2978,226,0
16    71988383    rs11639843    G    A    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    72007399    rs9925415    C    T    1169.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,35:35:87.29:1203,87,0
16    72007571    rs9927573    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    72011040    rs3929023    A    G    537.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:571,48,0
16    72011181    rs1559401    G    T    1522.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=31.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1556,111,0
16    72011193    rs1559400    A    C    1297.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=29.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1330,102,0
16    72011261    rs1559399    A    G    1007.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,30:30:84.25:1041,84,0
16    72011450    rs1559398    G    A    339.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9632;MQ=40.69;MQ0=0;QD=15.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,20:22:30.07:373,30,0
16    72011457    rs55908226    C    G    123.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.8142;MQ=39.99;MQ0=0;QD=6.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:2,18:20:17.98:157,18,0
16    72012072    rs8053841    C    T    760.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:793,63,0
16    72012408    .    A    G    35.63    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=21.5612;MQ=30.75;MQ0=0;MQRankSum=1.398;QD=2.74;ReadPosRankSum=-0.278;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:4,9:13:6.02:67,6,0
16    72012417    rs79306391    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9749;MQ=30.89;MQ0=0;MQRankSum=-0.876;QD=2.97;ReadPosRankSum=-1.881;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:7,5:12:6.02:67,6,0
16    72013539    rs9302633    T    C    514.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:548,42,0
16    72013797    rs7185272    G    C    3592.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=59.53;MQ0=0;QD=36.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3593,265,0
16    72017683    rs36114735    C    T    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    72018099    rs12443563    C    T    1154.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,37:37:87.29:1187,87,0
16    72019948    rs4788589    T    A    452.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.75;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:486,36,0
16    72020134    rs12708923    T    C    3469.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=33.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-498D10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467090    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3469,271,0
16    72020294    rs4788590    G    A    1697.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-498D10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467090    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1730,129,0
16    72020323    rs4788591    A    G    1785.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.985;DB;DP=51;Dels=0.0;FS=4.065;HRun=1;HaplotypeScore=1.983;MQ=60.0;MQ0=0;MQRankSum=-0.374;QD=35.0;ReadPosRankSum=1.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-498D10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467090    GT:AD:DP:GQ:PL    1/1:1,50:51:97.81:1818,98,0
16    72027191    rs7191148    T    A    814.68    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.712;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3479;MQ=59.38;MQ0=0;MQRankSum=0.391;QD=10.86;ReadPosRankSum=0.359;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    0/1:43,32:75:99:845,0,1370
16    72033801    rs72787027    G    T    837.04    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.252;DB;DP=60;Dels=0.0;FS=2.203;HRun=1;HaplotypeScore=3.6203;MQ=59.23;MQ0=0;MQRankSum=-0.053;QD=13.95;ReadPosRankSum=1.054;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PKD1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335106    GT:AD:DP:GQ:PL    0/1:31,29:60:99:867,0,948
16    72050885    rs11075914    G    C    766.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219240    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:799,60,0
16    72054984    rs1862752    G    T    128.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219240    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
16    72057282    rs2288002    A    G    1189.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219240    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1222,99,0
16    72088467    rs5472    A    G    823.68    MQFilter40    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.589;DB;DP=73;Dels=0.0;FS=6.36;HRun=1;HaplotypeScore=2.9321;MQ=32.86;MQ0=12;MQRankSum=0.386;QD=11.28;ReadPosRankSum=0.357;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355906    GT:AD:DP:GQ:PL    0/1:36,37:73:99:854,0,669
16    72088652    rs9927981    C    T    222.71    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=3.726;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=45.5;MQ0=0;MQRankSum=-1.607;QD=6.02;ReadPosRankSum=-1.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355906    GT:AD:DP:GQ:PL    0/1:26,11:37:99:253,0,739
16    72088675    rs4788458    T    C    761.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.79;MQ0=2;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355906    GT:AD:DP:GQ:PL    1/1:1,25:26:69.17:795,69,0
16    72089740    rs2070937    A    G    369.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355906    GT:AD:DP:GQ:PL    1/1:0,15:15:36.09:402,36,0
16    72092017    rs2070938    A    T    714.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.35;MQ0=0;QD=32.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355906    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:747,57,0
16    72093134    rs3852780    C    A    1132.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.481;DB;DP=36;Dels=0.0;FS=10.792;HRun=2;HaplotypeScore=0.9983;MQ=52.99;MQ0=0;MQRankSum=1.155;QD=31.45;ReadPosRankSum=0.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355906    GT:AD:DP:GQ:PL    1/1:1,35:36:62.87:1165,63,0
16    72108474    rs2070939    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.67;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228226    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
16    72109246    rs147743352    C    T    37.98    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.88;MQ0=11;MQRankSum=1.231;QD=2.37;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000228226    GT:AD:DP:GQ:PL    0/1:12,4:16:60.11:68,0,60
16    72110948    rs12646    C    G    1247.36    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=94;Dels=0.0;FS=17.544;HRun=1;HaplotypeScore=0.0;MQ=45.75;MQ0=1;MQRankSum=-1.814;QD=13.27;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=H339D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72110202_72110980;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356967    GT:AD:DP:GQ:PL    0/1:48,46:94:99:1277,0,1247
16    72122706    rs12708925    A    T    40.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNL4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268483    GT:AD:DP:GQ:PL    0/1:2,2:4:55.88:71,0,56
16    72122765    rs12932845    G    A    351.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNL4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268483    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:384,30,0
16    72124495    rs2303285    A    C    478.68    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.841;DB;DP=49;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=1.811;MQ=59.05;MQ0=0;MQRankSum=-0.41;QD=9.77;ReadPosRankSum=1.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNL4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268483    GT:AD:DP:GQ:PL    0/1:32,17:49:99:509,0,1136
16    72130203    rs1050361    C    G    341.06    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.536;DB;DP=22;Dels=0.0;FS=4.018;HRun=2;HaplotypeScore=1.5661;MQ=58.95;MQ0=0;MQRankSum=-0.334;QD=15.5;ReadPosRankSum=1.336;SNPEFF_AMINO_ACID_CHANGE=L49;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72130038_72130379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:9,13:22:99:371,0,282
16    72130556    rs9926927    G    T    413.21    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.761;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.752;QD=15.3;ReadPosRankSum=1.432;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:14,13:27:99:443,0,403
16    72130815    rs1050362    C    A    1609.97    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=5.911;DB;DP=106;Dels=0.0;FS=5.737;HRun=0;HaplotypeScore=2.5801;MQ=59.13;MQ0=0;MQRankSum=0.491;QD=15.19;ReadPosRankSum=-0.465;SNPEFF_AMINO_ACID_CHANGE=R140;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72130721_72130908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:52,54:106:99:1640,0,1387
16    72132356    rs11862813    C    T    41.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:72,0,25
16    72132713    rs2072142    C    T    459.91    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.16;DB;DP=27;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.025;QD=17.03;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:11,16:27:99:490,0,329
16    72133519    .    T    C    32.61    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.43;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:4,2:6:62.60:63,0,124
16    72134831    rs2269918    C    A    220.04    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=16;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9916;MQ=58.55;MQ0=0;MQRankSum=-0.922;QD=13.75;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:6,10:16:99:250,0,200
16    72135014    rs1050363    T    C    1581.63    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=113;Dels=0.0;FS=3.397;HRun=1;HaplotypeScore=2.4947;MQ=59.59;MQ0=0;MQRankSum=0.867;QD=14.0;ReadPosRankSum=0.506;SNPEFF_AMINO_ACID_CHANGE=A436;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72134985_72135092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:55,58:113:99:1612,0,1571
16    72136769    rs2074627    C    T    72.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.01;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,107
16    72137227    rs12708928    C    A    113.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.9;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:2,4:6:64.26:143,0,64
16    72137561    rs2240243    G    A    282.81    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=11.78;ReadPosRankSum=-1.333;SNPEFF_AMINO_ACID_CHANGE=T566;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72137501_72137687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:13,11:24:99:313,0,378
16    72138112    rs12325142    G    T    136.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.717;QD=11.35;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:6,6:12:99:166,0,210
16    72139184    rs2074626    C    A    557.01    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DB;DP=42;Dels=0.0;FS=4.947;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=13.26;ReadPosRankSum=-0.102;SNPEFF_AMINO_ACID_CHANGE=A772;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72139131_72139247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    0/1:20,22:42:99:587,0,562
16    72139396    rs150617    T    C    1310.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1343,102,0
16    72139537    rs42544    T    C    953.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    1/1:0,32:32:84.24:987,84,0
16    72142038    rs36033103    G    T    343.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.039;QD=17.2;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537792    GT:AD:DP:GQ:PL    0/1:8,12:20:99:374,0,217
16    72142072    rs8051882    C    T    378.50    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=18.92;ReadPosRankSum=0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537792    GT:AD:DP:GQ:PL    0/1:6,14:20:99:408,0,165
16    72142595    rs9925763    C    A    216.81    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=19.71;ReadPosRankSum=-1.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537792    GT:AD:DP:GQ:PL    0/1:4,7:11:99:247,0,134
16    72142895    rs9926156    G    C    141.97    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=7.16;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=10.92;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537792    GT:AD:DP:GQ:PL    0/1:6,7:13:99:172,0,208
16    72146441    rs7940    C    G    423.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268482    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:457,33,0
16    72153125    rs4788459    C    G    213.82    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;MQRankSum=0.796;QD=14.25;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537792    GT:AD:DP:GQ:PL    0/1:5,10:15:99:244,0,168
16    72156674    rs72787077    C    T    34.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=6.95;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537392    GT:AD:DP:GQ:PL    0/1:3,2:5:64.76:65,0,100
16    72156842    rs16973716    T    G    1798.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=K768N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72156813_72156887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355636    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1831,135,0
16    72157000    rs12935266    C    G    228.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537392    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:262,21,0
16    72157718    rs11075922    C    T    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537392    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
16    72158493    rs72787078    C    T    199.98    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.57;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537392    GT:AD:DP:GQ:PL    0/1:1,6:7:21.58:230,0,22
16    72158920    rs3812987    C    A    916.45    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=50;Dels=0.0;FS=1.659;HRun=0;HaplotypeScore=1.8665;MQ=59.63;MQ0=0;MQRankSum=-0.713;QD=18.33;ReadPosRankSum=-0.987;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237353    GT:AD:DP:GQ:PL    0/1:22,28:50:99:946,0,705
16    72158950    rs3812986    T    C    1288.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.45;MQ0=0;QD=37.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237353    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1321,102,0
16    72162855    rs6499562    G    A    1042.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237353    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1075,81,0
16    72162966    rs34832584    G    T    1638.33    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=7.525;DB;DP=109;Dels=0.0;FS=11.272;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=1.317;QD=15.03;ReadPosRankSum=-0.404;SNPEFF_AMINO_ACID_CHANGE=T505K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72162965_72163132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355636    GT:AD:DP:GQ:PL    0/1:59,50:109:99:1668,0,1676
16    72184566    rs35370634    C    T    2046.38    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=4.39;DB;DP=135;Dels=0.0;FS=0.672;HRun=1;HaplotypeScore=1.6828;MQ=59.45;MQ0=0;MQRankSum=0.278;QD=15.16;ReadPosRankSum=-0.763;SNPEFF_AMINO_ACID_CHANGE=E193K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72184507_72184728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000237353    GT:AD:DP:GQ:PL    0/1:66,69:135:99:2076,0,1980
16    72187957    rs3812985    A    T    166.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.87;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536211    GT:AD:DP:GQ:PL    0/1:6,6:12:99:196,0,215
16    72198642    rs3852785    G    A    687.16    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;MQRankSum=0.556;QD=11.26;ReadPosRankSum=-0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540440    GT:AD:DP:GQ:PL    0/1:32,29:61:99:717,0,933
16    72205021    rs71391445    GA    G    596.09    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=4.244;DB;DP=34;FS=3.746;HRun=2;HaplotypeScore=79.5763;IndelType=D;MQ=60.32;MQ0=0;MQRankSum=1.075;QD=17.53;ReadPosRankSum=0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMFBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237353    GT:AD:DP:GQ:PL    0/1:15,19:34:99:635,0,530
16    72821625    .    C    T    401.79    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.857;DP=88;Dels=0.0;FS=11.119;HRun=0;HaplotypeScore=3.9631;MQ=49.08;MQ0=0;MQRankSum=0.464;QD=4.57;ReadPosRankSum=1.475;SNPEFF_AMINO_ACID_CHANGE=G2603D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72816784_72822747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397992    GT:AD:DP:GQ:PL    0/1:51,35:88:99:432,0,759
16    72827758    rs699444    T    C    1566.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=G2027;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72827154_72832613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397992    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1599,123,0
16    72832135    rs740178    T    A    1812.33    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.102;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5525;MQ=59.65;MQ0=0;MQRankSum=0.675;QD=13.83;ReadPosRankSum=-0.438;SNPEFF_AMINO_ACID_CHANGE=A1482;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72827154_72832613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268489    GT:AD:DP:GQ:PL    0/1:65,66:131:99:1842,0,2085
16    72991286    rs2157786    C    T    292.95    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;MQRankSum=-0.066;QD=10.1;ReadPosRankSum=-0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268489    GT:AD:DP:GQ:PL    0/1:17,12:29:99:323,0,510
16    72991660    rs10852515    C    G    2162.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.274;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.697;MQ=56.07;MQ0=0;MQRankSum=1.172;QD=28.83;ReadPosRankSum=-1.223;SNPEFF_AMINO_ACID_CHANGE=P795;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72991326_72994093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268489    GT:AD:DP:GQ:PL    1/1:2,73:75:99:2195,138,0
16    72991715    rs4788682    A    G    1181.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.645;DB;DP=58;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=55.8;MQ0=0;MQRankSum=-1.597;QD=20.03;ReadPosRankSum=-1.053;SNPEFF_AMINO_ACID_CHANGE=V777A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72991326_72994093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268489    GT:AD:DP:GQ:PL    1/1:1,55:58:88.55:1215,89,0
16    72992221    rs61735550    G    A    560.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=35;Dels=0.0;FS=1.402;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.312;QD=16.0;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=S608;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_72991326_72994093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFHX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268489    GT:AD:DP:GQ:PL    0/1:15,20:35:99:590,0,463
16    73126858    rs7189194    T    G    1396.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.58;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1429,117,0
16    73164795    rs34115176    A    C    97.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.461;QD=6.97;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358463    GT:AD:DP:GQ:PL    0/1:8,6:14:99:128,0,254
16    73165038    rs56203505    A    G    621.93    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=0.461;DB;DP=34;Dels=0.0;FS=5.686;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.29;ReadPosRankSum=0.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358463    GT:AD:DP:GQ:PL    0/1:13,21:34:99:652,0,442
16    74114562    rs9926844    A    G    288.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,10:10:27.03:321,27,0
16    74366426    .    G    GTTGT    619.46    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.873;DP=23;FS=3.067;HRun=0;HaplotypeScore=423.2292;IndelType=I;MQ=44.55;MQ0=0;MQRankSum=-3.94;QD=20.65;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,10:23:99:658,0,698
16    74366531    rs3743922    A    C    572.74    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.048;DB;DP=66;Dels=0.0;FS=3.687;HRun=3;HaplotypeScore=0.734;MQ=48.6;MQ0=1;MQRankSum=-3.332;QD=8.68;ReadPosRankSum=-0.658;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:34,32:66:99:603,0,1073
16    74366672    rs3743923    G    A    63.11    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=49.24;MQ0=0;MQRankSum=-1.157;QD=4.85;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,4:13:93.10:93,0,310
16    74372302    rs2549259    C    T    888.09    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.217;DB;DP=83;Dels=0.0;FS=7.903;HRun=0;HaplotypeScore=0.0;MQ=47.48;MQ0=1;MQRankSum=-4.203;QD=10.7;ReadPosRankSum=0.278;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009053.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429810    GT:AD:DP:GQ:PL    0/1:48,35:83:99:918,0,1475
16    74372357    .    C    T    954.62    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.734;DP=129;Dels=0.0;FS=0.741;HRun=1;HaplotypeScore=3.4445;MQ=44.46;MQ0=2;MQRankSum=-2.301;QD=7.4;ReadPosRankSum=1.128;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009053.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429810    GT:AD:DP:GQ:PL    0/1:84,45:129:99:985,0,2504
16    74372481    .    G    A    247.39    MQFilter40;QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DP=145;Dels=0.0;FS=25.383;HRun=0;HaplotypeScore=0.0;MQ=22.26;MQ0=64;MQRankSum=2.349;QD=1.71;ReadPosRankSum=-0.082;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009053.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429810    GT:AD:DP:GQ:PL    0/1:120,25:145:99:277,0,1513
16    74372914    rs67181940    GT    G    112.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DB;DP=17;FS=0.0;HRun=15;HaplotypeScore=71.0426;IndelType=D;MQ=56.13;MQ0=0;MQRankSum=-0.791;QD=5.61;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009053.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429810    GT:AD:DP:GQ:PL    1/1:10,9:17:5.20:152,5,0
16    74394379    rs5817904    T    TA    423.11    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=4.176;DB;DP=46;FS=0.0;HRun=3;HaplotypeScore=215.3622;IndelType=I;MQ=31.61;MQ0=4;MQRankSum=-1.347;QD=6.04;ReadPosRankSum=0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009053.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429810    GT:AD:DP:GQ:PL    0/1:44,23:46:99:462,0,876
16    74394425    rs3852692    A    G    1039.60    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.166;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4029;MQ=43.22;MQ0=0;MQRankSum=-0.662;QD=8.96;ReadPosRankSum=-1.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009053.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429810    GT:AD:DP:GQ:PL    0/1:68,47:115:99:1070,0,1797
16    74394671    rs62055171    T    C    1794.68    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.208;DB;DP=171;Dels=0.0;FS=14.411;HRun=0;HaplotypeScore=5.0732;MQ=52.49;MQ0=3;MQRankSum=-5.758;QD=10.5;ReadPosRankSum=-0.556;SNPEFF_AMINO_ACID_CHANGE=A29;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74394531_74394789;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009053.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429810    GT:AD:DP:GQ:PL    0/1:90,81:171:99:1825,0,2970
16    74394745    rs71391080    A    G    933    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.279;DB;DP=149;Dels=0.0;FS=4.888;HRun=1;HaplotypeScore=0.0;MQ=47.71;MQ0=19;MQRankSum=-9.127;QD=6.26;ReadPosRankSum=-0.407;SNPEFF_AMINO_ACID_CHANGE=W5R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74394531_74394789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009053.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429810    GT:AD:DP:GQ:PL    0/1:89,60:149:99:963,0,2832
16    74415392    .    C    A    54.74    QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.053;DP=132;Dels=0.0;FS=14.941;HRun=0;HaplotypeScore=0.5784;MQ=44.24;MQ0=9;MQRankSum=-6.631;QD=0.41;ReadPosRankSum=-0.476;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429990    GT:AD:DP:GQ:PL    0/1:103,29:132:84.73:85,0,3165
16    74415652    .    T    C    900.39    MQFilter40    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.515;DP=132;DS;Dels=0.0;FS=1.149;HRun=0;HaplotypeScore=2.453;MQ=35.26;MQ0=7;MQRankSum=-0.51;QD=6.82;ReadPosRankSum=-0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429990    GT:AD:DP:GQ:PL    0/1:82,50:132:99:930,0,2076
16    74425358    rs6564065    G    A    903.05    MQFilter40    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.87;DB;DP=248;DS;Dels=0.0;FS=54.796;HRun=2;HaplotypeScore=2.5683;MQ=36.57;MQ0=43;MQRankSum=-8.633;QD=3.64;ReadPosRankSum=-0.194;SNPEFF_AMINO_ACID_CHANGE=A116T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74425289_74425741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504746    GT:AD:DP:GQ:PL    0/1:136,110:248:99:933,0,4105
16    74425548    rs2868591    A    G    2866.22    PASS    AB=0.572;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=250;DS;Dels=0.0;FS=2.872;HRun=0;HaplotypeScore=4.728;MQ=57.73;MQ0=0;MQRankSum=0.403;QD=11.46;ReadPosRankSum=-1.61;SNPEFF_AMINO_ACID_CHANGE=Y179C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74425289_74425741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504746    GT:AD:DP:GQ:PL    0/1:143,107:250:99:2896,0,4509
16    74425569    rs11641596    C    T    2541.52    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4716;MQ=57.49;MQ0=0;MQRankSum=0.146;QD=10.17;ReadPosRankSum=1.14;SNPEFF_AMINO_ACID_CHANGE=P186L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74425289_74425741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPIPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504746    GT:AD:DP:GQ:PL    0/1:153,95:250:99:2572,0,5052
16    74443401    .    T    C    194.11    MQFilter40    AC=2;AF=1.00;AN=2;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=14.51;MQ0=14;QD=5.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    1/1:0,38:38:24.03:227,24,0
16    74443433    .    C    G    51.60    MQFilter40;QDFilter2    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.17;MQ0=22;MQRankSum=0.516;QD=0.65;ReadPosRankSum=-1.608;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:62,17:79:81.59:82,0,708
16    74443542    rs146555914    G    C    1020.90    MQFilter40    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=122;Dels=0.0;FS=1.7;HRun=1;HaplotypeScore=1.1567;MQ=32.74;MQ0=4;MQRankSum=0.098;QD=8.37;ReadPosRankSum=-2.004;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:72,50:122:99:1051,0,1531
16    74443733    .    T    G    266.92    MQFilter40    AC=2;AF=1.00;AN=2;DP=58;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=14.17;MQ0=28;QD=4.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    1/1:1,56:58:35.94:300,36,0
16    74443789    rs79314098    T    TG    169.45    PASS    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.638;DB;DP=40;FS=0.0;HRun=4;HaplotypeScore=125.0086;IndelType=I;MQ=18.34;MQ0=16;MQRankSum=-0.314;QD=2.78;ReadPosRankSum=-1.384;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:49,12:40:99:208,0,876
16    74444248    rs149584896    G    A    30.18    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.52;MQ0=0;MQRankSum=0.358;QD=6.04;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:3,2:5:60.17:60,0,71
16    74444384    .    C    T    156.49    MQFilter40    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.328;DP=51;Dels=0.0;FS=7.669;HRun=0;HaplotypeScore=0.0;MQ=34.99;MQ0=7;MQRankSum=0.786;QD=3.07;ReadPosRankSum=-1.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:41,10:51:99:186,0,991
16    74444538    .    G    A    46.85    MQFilter40;QDFilter2    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=2.716;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8284;MQ=15.69;MQ0=43;MQRankSum=0.045;QD=0.53;ReadPosRankSum=1.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:73,15:88:76.85:77,0,536
16    74444838    rs142404156    A    G    259.17    MQFilter40;QDFilter2    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.218;DB;DP=185;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=10.56;MQ0=90;MQRankSum=-1.492;QD=1.4;ReadPosRankSum=-1.093;SNPEFF_AMINO_ACID_CHANGE=I360T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74444803_74444932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339953    GT:AD:DP:GQ:PL    0/1:78,107:185:99:289,0,242
16    74445003    .    C    T    229.60    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.229;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.51;MQ0=2;MQRankSum=0.468;QD=2.55;ReadPosRankSum=-1.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:70,20:90:99:260,0,1379
16    74445522    .    C    A    128.43    MQFilter40;QDFilter2    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DP=154;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8188;MQ=16.35;MQ0=52;MQRankSum=0.673;QD=0.83;ReadPosRankSum=0.621;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:125,29:154:99:158,0,1606
16    74445539    .    T    C    111.84    MQFilter40;QDFilter2    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=1.437;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7129;MQ=14.26;MQ0=72;MQRankSum=1.693;QD=0.69;ReadPosRankSum=0.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:133,28:162:99:142,0,1194
16    74445689    .    C    T    212.85    MQFilter40;QDFilter2    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=2.14;DP=137;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=12.37;MQ0=94;MQRankSum=0.759;QD=1.55;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:94,42:137:99:243,0,259
16    74445817    rs143675471    C    A    1107.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.28;MQ0=15;QD=24.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    1/1:0,46:46:90.25:1141,90,0
16    74445850    rs141835564    GA    G    236.67    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=40;FS=0.0;HRun=10;HaplotypeScore=222.6842;IndelType=D;MQ=36.92;MQ0=2;MQRankSum=-0.043;QD=5.64;ReadPosRankSum=-0.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425714    GT:AD:DP:GQ:PL    0/1:27,15:40:99:276,0,650
16    74447124    .    C    CT    242.35    PASS    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.551;DP=42;FS=1.672;HRun=1;HaplotypeScore=103.326;IndelType=I;MQ=49.59;MQ0=0;MQRankSum=2.032;QD=5.64;ReadPosRankSum=1.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268492    GT:AD:DP:GQ:PL    0/1:34,9:42:99:281,0,1123
16    74452071    .    G    A    354.07    MQFilter40    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.916;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.75;MQ0=13;MQRankSum=0.521;QD=6.81;ReadPosRankSum=-0.634;SNPEFF_AMINO_ACID_CHANGE=P114;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74451957_74452196;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268492    GT:AD:DP:GQ:PL    0/1:30,22:52:99:384,0,363
16    74455302    rs3851723    A    G    751.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.66;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429489    GT:AD:DP:GQ:PL    1/1:0,22:22:63.17:784,63,0
16    74455385    rs2550835    C    G    64.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=27.73;MQ0=0;QD=21.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429489    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
16    74486189    rs7978    T    C    50.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
16    74490789    rs12446054    G    A    97.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.23;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:4,4:8:99:128,0,128
16    74491575    rs2288053    C    A    110.83    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=13.85;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:3,5:8:99:141,0,108
16    74497523    .    G    A    85.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=10.71;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:4,4:8:90.27:116,0,90
16    74499939    rs4888243    C    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    74501856    rs6564117    C    G    112.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.63;MQ0=0;MQRankSum=-0.421;QD=14.05;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,139
16    74503860    rs2303278    T    A    403.08    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.138;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.494;QD=13.0;ReadPosRankSum=-1.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:16,15:31:99:433,0,493
16    74504005    rs2303279    T    C    257.34    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.626;DB;DP=18;Dels=0.0;FS=3.039;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=14.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:7,11:18:99:287,0,242
16    74504097    rs12716764    G    C    250.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:284,21,0
16    74504843    rs12447531    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:2,2:4:71.42:72,0,71
16    74513985    rs918781    C    T    275.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:309,24,0
16    74514032    rs1005715    T    C    404.48    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.845;QD=23.79;ReadPosRankSum=-0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:5,12:17:99:434,0,151
16    74514476    rs4887771    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    74517155    rs2303281    A    G    72.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.42;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,146
16    74519533    rs968649    C    A    332.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
16    74526752    rs2010910    G    A    189.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=50.65;MQ0=0;QD=23.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:222,18,0
16    74530611    rs71376211    T    TAC    272.50    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=118.1899;IndelType=I;MQ=55.68;MQ0=0;MQRankSum=0.74;QD=10.9;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:17,5:25:55.72:312,0,56
16    74537591    rs4887772    C    T    551.92    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.3;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=10.41;ReadPosRankSum=-0.7;SNPEFF_AMINO_ACID_CHANGE=L193;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74537429_74537644;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447066    GT:AD:DP:GQ:PL    0/1:32,21:53:99:582,0,1057
16    74565806    rs3960602    C    T    65.49    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.78;MQ0=0;MQRankSum=0.727;QD=16.37;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:95,0,28
16    74566058    .    G    A    213.78    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.756;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.75;MQ0=1;MQRankSum=0.184;QD=13.36;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    0/1:6,10:16:99:244,0,170
16    74640386    rs4438331    T    G    232.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205061    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:265,21,0
16    74657783    rs117357621    A    G    457.97    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.19;DB;DP=33;Dels=0.0;FS=1.686;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.719;QD=13.88;ReadPosRankSum=0.34;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    0/1:15,18:33:99:488,0,423
16    74660174    rs12933037    G    A    609.86    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.701;QD=19.06;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    0/1:14,18:32:99:640,0,439
16    74664743    rs7193541    T    C    1212.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=I564V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74664679_74664855;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:0,34:34:90.30:1245,90,0
16    74664810    rs7188880    A    T    1313.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=P541;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74664679_74664855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1346,99,0
16    74664969    rs7193959    T    A    114.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:147,12,0
16    74666634    rs4072450    G    C    299.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:332,27,0
16    74670458    rs4888262    C    T    769.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=29.61;SNPEFF_AMINO_ACID_CHANGE=T404;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74670244_74670475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:0,26:26:60.19:803,60,0
16    74685589    rs6564154    C    T    130.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
16    74686166    rs9923145    G    A    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
16    74694692    rs56143602    T    C    324.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:357,27,0
16    74695079    rs8058922    G    T    1720.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.21;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.75;QD=32.46;ReadPosRankSum=0.07;SNPEFF_AMINO_ACID_CHANGE=T90N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74694830_74695349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFWD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361070    GT:AD:DP:GQ:PL    1/1:2,51:53:60.41:1753,60,0
16    74706298    rs4888274    A    T    693.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=52;Dels=0.0;FS=1.89;HRun=0;HaplotypeScore=0.5784;MQ=59.56;MQ0=0;MQRankSum=0.138;QD=13.34;ReadPosRankSum=-1.221;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306247    GT:AD:DP:GQ:PL    0/1:28,24:52:99:724,0,957
16    74709737    rs7184423    C    A    408.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.701;QD=19.46;ReadPosRankSum=-0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306247    GT:AD:DP:GQ:PL    0/1:7,14:21:99:439,0,174
16    74712905    rs6564158    A    T    303.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=22;Dels=0.0;FS=2.318;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.182;QD=13.79;ReadPosRankSum=-0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306247    GT:AD:DP:GQ:PL    0/1:11,11:22:99:333,0,317
16    74726270    rs55929310    T    G    927.27    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=0.917;DB;DP=75;Dels=0.0;FS=1.936;HRun=1;HaplotypeScore=9.6115;MQ=59.39;MQ0=0;MQRankSum=-0.328;QD=12.2;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=M169L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74726240_74726314;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLKL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306247    GT:AD:DP:GQ:PL    0/1:43,32:75:99:957,0,1236
16    74729501    rs34251827    C    G    624.30    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.218;DB;DP=46;Dels=0.0;FS=2.597;HRun=1;HaplotypeScore=0.5784;MQ=58.99;MQ0=0;MQRankSum=0.563;QD=13.57;ReadPosRankSum=-0.931;SNPEFF_AMINO_ACID_CHANGE=S52T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74729196_74729657;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLKL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306247    GT:AD:DP:GQ:PL    0/1:26,20:46:99:654,0,787
16    74750405    rs2301865    G    A    638.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_AMINO_ACID_CHANGE=P293;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_74750245_74750497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FA2H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219368    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:671,48,0
16    74760292    rs35568796    CT    C    131.70    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;FS=0.0;HRun=11;HaplotypeScore=43.0191;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=14.63;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FA2H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219368    GT:AD:DP:GQ:PL    0/1:1,8:9:4.72:170,0,5
16    74908439    rs2870148    C    T    107.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
16    74920374    rs4888305    C    T    364.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:398,30,0
16    74923487    rs56178162    T    C    58.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.573;QD=6.5;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:6,3:9:88.47:88,0,220
16    74937650    rs11149778    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
16    74937723    rs3636    C    G    112.13    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.754;QD=16.02;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:3,4:7:81.28:142,0,81
16    74938083    rs9930498    A    G    71.93    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=14.39;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:102,0,30
16    74943022    rs34084472    C    G    49.25    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.16;MQ0=0;MQRankSum=-1.3;QD=7.04;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    0/1:4,3:7:79.24:79,0,120
16    74943047    rs35509388    C    T    36.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.73;MQ0=0;MQRankSum=0.736;QD=12.22;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    0/1:1,2:3:25.33:67,0,25
16    74943056    rs11862494    A    G    80.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
16    74943099    rs2303250    A    G    40.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=13.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:70,0,30
16    74943164    rs2303251    C    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    74943216    rs56094665    C    A    169.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
16    74943260    rs2303254    A    G    248.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=20.69;ReadPosRankSum=0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    0/1:4,8:12:99:278,0,126
16    74943890    rs12325318    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=12.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
16    74944006    rs12324960    C    T    92.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536050    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
16    74983525    rs12447476    C    T    85.59    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=7.78;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:7,4:11:99:116,0,260
16    74985516    rs3743921    T    A    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
16    74999503    rs73609906    A    C    51.21    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.931;QD=4.66;ReadPosRankSum=-1.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:8,3:11:81.21:81,0,300
16    74999522    rs72798674    T    A    523.21    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.564;QD=22.75;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:7,15:23:99:553,0,218
16    74999617    rs4888324    A    C    1344.47    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.132;DB;DP=99;Dels=0.0;FS=7.994;HRun=0;HaplotypeScore=3.4384;MQ=59.3;MQ0=0;MQRankSum=-1.718;QD=13.58;ReadPosRankSum=2.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:54,45:99:99:1374,0,1649
16    74999625    rs4887796    A    T    1334.27    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=104;Dels=0.0;FS=7.141;HRun=1;HaplotypeScore=2.4711;MQ=59.33;MQ0=0;MQRankSum=0.771;QD=12.83;ReadPosRankSum=1.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:57,47:104:99:1364,0,1781
16    75018874    rs12448858    G    A    104.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=8.74;ReadPosRankSum=-1.718;SNPEFF_AMINO_ACID_CHANGE=F14;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75018862_75018915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:6,6:12:99:135,0,171
16    75019111    rs111962068    A    G    63.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.78;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262144    GT:AD:DP:GQ:PL    0/1:2,3:5:62.07:94,0,62
16    75034133    rs6564195    A    G    87.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320619    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
16    75146711    rs34195333    C    G    411.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320619    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:444,36,0
16    75148604    rs755099    G    A    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320619    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    75186727    rs11859007    G    A    992.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332307    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1026,78,0
16    75200378    rs9929570    T    C    159.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332307    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
16    75200407    rs11865310    G    C    149.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332307    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:182,15,0
16    75200416    rs7200789    T    C    256.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332307    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
16    75201060    rs6564215    T    C    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332307    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    75202998    rs12716783    A    C    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332307    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
16    75238103    rs4737    C    T    1155.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.8;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=A250T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75237994_75238220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303037    GT:AD:DP:GQ:PL    1/1:0,35:35:93.28:1188,93,0
16    75263974    rs6564241    T    C    453.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162330    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:486,39,0
16    75267676    rs4888361    A    G    209.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162330    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:242,21,0
16    75269267    rs3169330    A    G    731.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=30.47;SNPEFF_AMINO_ACID_CHANGE=A362;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75268787_75269884;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535626    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:764,60,0
16    75276295    rs7195938    A    G    448.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162330    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:482,36,0
16    75276775    rs1035539    G    A    354.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.09;MQ0=0;QD=25.35;SNPEFF_AMINO_ACID_CHANGE=P122S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75276368_75276988;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418647    GT:AD:DP:GQ:PL    1/1:0,14:14:30.08:388,30,0
16    75277344    rs4888363    A    T    1467.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=58.48;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162330    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1500,111,0
16    75281964    rs1862737    A    C    1124.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162330    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1157,87,0
16    75327700    rs6625    G    A    74.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:3,3:6:96.95:104,0,97
16    75327916    rs2073619    A    G    1439.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=L278;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75327608_75327940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1472,111,0
16    75338855    rs3743607    C    T    806.22    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.909;DB;DP=34;Dels=0.0;FS=2.941;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.624;QD=23.71;ReadPosRankSum=-0.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:10,24:34:99:836,0,274
16    75339131    rs7192981    T    G    876.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    1/1:0,24:24:66.19:910,66,0
16    75429252    rs2285225    T    C    116.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.34;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:2,4:6:26.71:146,0,27
16    75429291    rs2285224    A    G    76.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.26;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:2,3:5:32.73:106,0,33
16    75445605    rs1109341    G    A    88.43    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.051;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=6.32;ReadPosRankSum=1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:10,4:14:99:118,0,372
16    75445675    rs1109342    G    A    532.12    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.262;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.05;QD=15.2;ReadPosRankSum=1.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:19,16:35:99:562,0,488
16    75445906    rs247435    C    T    1148.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    1/1:0,32:32:90.28:1182,90,0
16    75446257    rs7206589    G    T    227.01    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.206;QD=11.95;ReadPosRankSum=-0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:11,8:19:99:257,0,386
16    75448273    rs8056236    C    T    31.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.49;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:5,2:7:61.39:61,0,187
16    75448659    rs8051407    A    G    190.07    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.228;DB;DP=23;Dels=0.0;FS=13.239;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.48;QD=8.26;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CFDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283882    GT:AD:DP:GQ:PL    0/1:14,9:23:99:220,0,506
16    75481215    rs451589    C    T    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM170A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357613    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
16    75481771    rs2242405    A    G    75.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM170A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357613    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
16    75563835    rs148051752    C    T    724.51    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=3.811;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=53.85;MQ0=0;MQRankSum=0.638;QD=7.71;ReadPosRankSum=-0.383;SNPEFF_AMINO_ACID_CHANGE=A150T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75562430_75565538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336257    GT:AD:DP:GQ:PL    0/1:52,35:94:99:755,0,1158
16    75573754    rs2242408    G    A    72.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=1.3;QD=9.07;ReadPosRankSum=0.937;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460606    GT:AD:DP:GQ:PL    0/1:4,4:8:99:103,0,117
16    75573884    rs2242407    T    C    727.97    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1288;MQ=58.62;MQ0=0;MQRankSum=-0.543;QD=8.0;ReadPosRankSum=0.569;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460606    GT:AD:DP:GQ:PL    0/1:59,32:91:99:758,0,1927
16    75575567    rs2641799    G    C    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM231;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258173    GT:AD:DP:GQ:PL    0/1:1,2:3:34.29:73,0,34
16    75576391    rs146731200    CG    C    185.21    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=29.4725;IndelType=D;MQ=41.46;MQ0=0;MQRankSum=0.135;QD=12.35;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM231;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258173    GT:AD:DP:GQ:PL    0/1:7,8:12:99:224,0,180
16    75579233    rs2738801    A    T    2184.06    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.613;DB;DP=171;Dels=0.0;FS=2.01;HRun=1;HaplotypeScore=0.8321;MQ=51.74;MQ0=0;MQRankSum=2.514;QD=12.77;ReadPosRankSum=0.542;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM231;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258173    GT:AD:DP:GQ:PL    0/1:88,83:171:99:2214,0,2579
16    75579470    .    T    G    127.92    MQFilter40;QDFilter2    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=13.12;MQ0=55;MQRankSum=-0.278;QD=1.94;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM231;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258173    GT:AD:DP:GQ:PL    0/1:46,20:66:99:158,0,118
16    75579924    rs8055668    A    C    287.61    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=41.9;MQ0=1;MQRankSum=-1.456;QD=9.92;ReadPosRankSum=1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM231;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258173    GT:AD:DP:GQ:PL    0/1:17,12:29:99:318,0,420
16    75600485    rs8192516    G    C    92.28    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.421;QD=10.25;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABARAPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000037243    GT:AD:DP:GQ:PL    0/1:4,5:9:99:122,0,107
16    75642592    rs4888438    G    C    105.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=13.16;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307921    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,110
16    75646423    rs62619985    A    G    726.80    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=1.182;DB;DP=50;Dels=0.0;FS=1.248;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.859;QD=14.54;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=I225T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75646141_75646759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542252    GT:AD:DP:GQ:PL    0/1:21,29:50:99:757,0,631
16    75646685    rs3743598    G    T    1054.34    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=2.837;DB;DP=75;Dels=0.0;FS=4.78;HRun=1;HaplotypeScore=4.3845;MQ=59.01;MQ0=0;MQRankSum=-0.746;QD=14.06;ReadPosRankSum=0.194;SNPEFF_AMINO_ACID_CHANGE=H138N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75646141_75646759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542252    GT:AD:DP:GQ:PL    0/1:34,41:75:99:1084,0,987
16    75661803    rs6834    G    C    617.22    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.84;DB;DP=44;Dels=0.0;FS=5.031;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-0.163;QD=14.03;ReadPosRankSum=0.108;SNPEFF_AMINO_ACID_CHANGE=T595S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_75661622_75661891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:20,24:44:99:647,0,638
16    75663188    rs112389955    C    CA    382.44    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=33;FS=4.26;HRun=2;HaplotypeScore=76.7608;IndelType=I;MQ=60.33;MQ0=0;MQRankSum=1.226;QD=11.59;ReadPosRankSum=0.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:21,12:33:99:421,0,643
16    75665005    rs7187847    G    A    106.12    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=15.16;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:2,5:7:64.40:136,0,64
16    75665019    rs7189895    A    G    95.98    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.0;QD=12.0;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:3,5:8:94.48:126,0,94
16    75667954    rs6564270    C    T    384.36    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.875;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.645;QD=13.73;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:15,13:28:99:414,0,464
16    75674252    .    TA    T    149.67    QDFilter2    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.147;DP=76;FS=0.0;HRun=18;HaplotypeScore=521.2398;IndelType=D;MQ=52.2;MQ0=0;MQRankSum=-0.315;QD=1.97;ReadPosRankSum=1.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:40,24:76:91.74:189,0,92
16    75674476    rs16941533    C    T    116.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
16    75681603    rs1865492    G    A    148.07    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.036;QD=13.46;ReadPosRankSum=0.365;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:4,7:11:99:178,0,133
16    75681743    rs1865493    C    G    251.68    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=23;Dels=0.0;FS=1.808;HRun=1;HaplotypeScore=0.0;MQ=56.92;MQ0=0;MQRankSum=0.528;QD=10.94;ReadPosRankSum=0.176;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:12,11:23:99:282,0,371
16    75681756    rs2233810    C    A    322.40    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.04;DB;DP=27;Dels=0.0;FS=1.721;HRun=0;HaplotypeScore=0.9665;MQ=57.39;MQ0=0;MQRankSum=-0.789;QD=11.94;ReadPosRankSum=0.897;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302445    GT:AD:DP:GQ:PL    0/1:14,13:27:99:352,0,465
16    75689900    rs56892159    C    T    83.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=53.95;MQ0=0;MQRankSum=-0.727;QD=20.95;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TERF2IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300086    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:116,9,0
16    75728261    rs7198138    G    T    109.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC025287.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398113    GT:AD:DP:GQ:PL    0/1:3,4:7:99:139,0,103
16    75730037    rs5817959    T    TA    523.15    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=51.4127;IndelType=I;MQ=62.13;MQ0=0;MQRankSum=0.739;QD=20.93;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC025287.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398113    GT:AD:DP:GQ:PL    0/1:11,14:25:99:562,0,371
16    75730165    rs116559961    C    G    30.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.4;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC025287.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398113    GT:AD:DP:GQ:PL    0/1:5,2:7:60.81:61,0,177
16    75734218    rs77712026    C    T    137.49    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=12.5;ReadPosRankSum=1.668;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC025287.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398113    GT:AD:DP:GQ:PL    0/1:5,6:11:99:167,0,143
16    76311602    rs78088927    G    GT    575.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=49.2326;IndelType=I;MQ=59.13;MQ0=0;QD=41.14;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000377504    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:618,42,0
16    76482546    rs56137120    C    T    370.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:403,30,0
16    76482910    rs3947083    G    A    1265.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1298,99,0
16    76482994    rs4366733    G    A    415.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:448,33,0
16    76483019    rs1506825    A    T    157.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:190,15,0
16    76486241    rs34174420    T    C    112.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
16    76495818    .    T    C    970.75    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DP=81;Dels=0.0;FS=9.823;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.599;QD=11.98;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    0/1:49,32:81:99:1001,0,1544
16    76496025    rs57292037    A    G    1630.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.074;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.371;QD=31.96;ReadPosRankSum=0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:2,49:51:53.03:1663,53,0
16    76496131    rs34782687    C    T    262.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:296,21,0
16    76501222    rs72797097    G    A    1089.39    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=5.593;DB;DP=91;Dels=0.0;FS=1.049;HRun=0;HaplotypeScore=1.612;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=11.97;ReadPosRankSum=-1.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    0/1:54,37:91:99:1119,0,1504
16    76523792    rs7201030    A    G    1017.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,29:29:81.20:1051,81,0
16    76528976    rs4268783    T    C    4145.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.67;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,140:140:99:4146,337,0
16    76529100    rs1567114    G    A    582.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471618    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:615,48,0
16    76529120    rs1567115    G    C    414.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471618    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:447,36,0
16    76529215    rs1567116    T    C    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471618    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    76532392    rs12932943    C    T    1702.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471618    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1735,126,0
16    76532583    rs12933808    A    G    2282.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=Q713R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_76532464_76532591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000478060    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2316,184,0
16    76555015    rs67991446    CT    C    2361.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;FS=0.0;HRun=11;HaplotypeScore=368.4636;IndelType=D;MQ=60.19;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:11,99:115:99:2403,303,0
16    76569754    rs6564348    A    T    1626.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1660,123,0
16    76587148    rs9938561    A    G    367.02    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=22;Dels=0.0;FS=2.126;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.034;QD=16.68;ReadPosRankSum=-0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    0/1:8,14:22:99:397,0,266
16    76587202    rs7202925    T    G    523.91    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=40;Dels=0.0;FS=1.222;HRun=0;HaplotypeScore=0.9997;MQ=59.42;MQ0=0;MQRankSum=-0.204;QD=13.1;ReadPosRankSum=-0.014;SNPEFF_AMINO_ACID_CHANGE=D1082E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_76587180_76587398;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000478060    GT:AD:DP:GQ:PL    0/1:22,18:40:99:554,0,687
16    76587331    rs7184958    T    C    450.95    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.175;DB;DP=34;Dels=0.0;FS=5.121;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.199;QD=13.26;ReadPosRankSum=-0.38;SNPEFF_AMINO_ACID_CHANGE=T1125;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_76587180_76587398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000478060    GT:AD:DP:GQ:PL    0/1:15,19:34:99:481,0,488
16    76587647    rs4243123    G    C    1405.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1439,105,0
16    76592313    rs7196722    T    G    507.27    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.396;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.944;QD=12.68;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CNTNAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307431    GT:AD:DP:GQ:PL    0/1:22,18:40:99:537,0,807
16    77227180    rs2241416    G    A    171.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248248    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:205,15,0
16    77227942    rs3743762    T    C    36.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248248    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:66,0,30
16    77227965    rs3743763    G    A    31.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=7.96;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248248    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:62,0,32
16    77228629    rs2232503    A    G    1214.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.07;MQ0=0;QD=35.72;SNPEFF_AMINO_ACID_CHANGE=R145;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_77228232_77229051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545553    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1247,99,0
16    77228866    rs2232504    T    C    422.97    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.932;DB;DP=36;Dels=0.0;FS=3.82;HRun=0;HaplotypeScore=0.5784;MQ=57.39;MQ0=0;MQRankSum=-0.111;QD=11.75;ReadPosRankSum=-0.493;SNPEFF_AMINO_ACID_CHANGE=V224;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_77228232_77229051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545553    GT:AD:DP:GQ:PL    0/1:20,16:36:99:453,0,623
16    77231935    rs2232509    C    T    1966.78    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.831;DB;DP=135;Dels=0.0;FS=0.962;HRun=0;HaplotypeScore=4.4126;MQ=59.83;MQ0=0;MQRankSum=-0.392;QD=14.57;ReadPosRankSum=-0.857;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320859    GT:AD:DP:GQ:PL    0/1:63,72:135:99:1997,0,2138
16    77240217    rs9928151    G    C    817.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.801;QD=20.96;ReadPosRankSum=-1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MON1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248248    GT:AD:DP:GQ:PL    0/1:13,26:39:99:848,0,386
16    77241847    rs9933644    G    A    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378644    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    77242035    rs9933799    G    A    481.29    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.64;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.25;MQ0=0;MQRankSum=0.771;QD=15.53;ReadPosRankSum=1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378644    GT:AD:DP:GQ:PL    0/1:15,16:31:99:511,0,466
16    77242083    rs9934426    C    G    1848.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378644    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1882,138,0
16    77242284    rs1424146    G    A    728.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378644    GT:AD:DP:GQ:PL    1/1:0,19:19:57.17:762,57,0
16    77244795    rs4887895    G    T    178.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=14.91;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378644    GT:AD:DP:GQ:PL    0/1:6,6:12:99:209,0,213
16    77244837    rs4887896    T    C    142.58    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.63;MQ0=0;MQRankSum=-1.156;QD=8.39;ReadPosRankSum=-0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378644    GT:AD:DP:GQ:PL    0/1:11,6:17:99:173,0,406
16    77325325    rs35478105    G    T    3288.52    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=4.378;DB;DP=201;Dels=0.0;FS=4.103;HRun=0;HaplotypeScore=3.8515;MQ=60.0;MQ0=0;MQRankSum=1.095;QD=16.36;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=S1080R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_77325163_77325375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    0/1:90,110:201:99:3289,0,2395
16    77327226    rs4888618    C    A    527.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:561,42,0
16    77353973    rs9930984    G    T    627.55    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.516;DB;DP=32;Dels=0.0;FS=3.261;HRun=0;HaplotypeScore=0.9973;MQ=59.28;MQ0=0;MQRankSum=1.071;QD=19.61;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L769I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_77353746_77353990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    0/1:11,21:32:99:658,0,317
16    77359919    rs11640912    A    T    272.35    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.11;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.472;QD=11.84;ReadPosRankSum=-0.22;SNPEFF_AMINO_ACID_CHANGE=L626I;SNPEFF_CODON_CHANGE=Tta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_77359763_77359935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    0/1:14,9:23:99:302,0,481
16    77389956    rs8059275    A    G    1733.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=D447;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_77389837_77389974;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1766,132,0
16    77390128    rs10514415    T    C    77.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
16    77393072    rs891134    C    G    79.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
16    77393207    rs2650907    G    C    368.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:401,30,0
16    77395948    rs1909802    C    G    901.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=37.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,24:24:72.20:935,72,0
16    77396307    rs2650904    T    C    90.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    77397899    rs1948718    T    C    181.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:214,18,0
16    77398081    rs1948719    T    C    1691.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6584;MQ=59.14;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1725,129,0
16    77398386    rs2562119    A    T    217.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=27.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:250,21,0
16    77401684    rs2434895    T    G    587.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:621,48,0
16    77465036    rs1366545    C    G    131.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
16    77469711    rs62043630    G    A    334.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=47.12;MQ0=0;QD=33.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:368,30,0
16    77469909    rs150986433    ATGTGTGTGTGTGTGTGTGTGTG    A    1123.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.294;DB;DP=12;FS=3.424;HRun=0;HaplotypeScore=338.3387;IndelType=D;MQ=36.07;MQ0=0;MQRankSum=-0.925;QD=93.6;ReadPosRankSum=0.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:5,5:12:4.06:1163,4,0
16    77469954    .    T    TACAC    800.19    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=0;HaplotypeScore=287.1132;IndelType=I;MQ=35.95;MQ0=0;QD=66.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,11:12:36.12:842,36,0
16    77469974    rs2343699    T    C    61.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.75;MQ0=0;QD=4.43;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282849    GT:AD:DP:GQ:PL    1/1:0,14:14:9:94,9,0
16    77759136    rs3743756    T    C    123.90    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=15.49;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268533    GT:AD:DP:GQ:PL    0/1:3,5:8:96.27:154,0,96
16    77769647    rs186305    C    T    3413.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=59.53;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268533    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3413,262,0
16    77775459    rs11648791    G    A    807.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.938;DB;DP=45;Dels=0.0;FS=2.822;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.096;QD=17.94;ReadPosRankSum=0.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268533    GT:AD:DP:GQ:PL    0/1:15,30:45:99:837,0,476
16    77775672    rs16946429    A    G    587.33    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=1.112;DB;DP=37;Dels=0.0;FS=7.118;HRun=1;HaplotypeScore=1.8255;MQ=58.35;MQ0=0;MQRankSum=-1.082;QD=15.87;ReadPosRankSum=-0.442;SNPEFF_AMINO_ACID_CHANGE=E128G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_77775479_77775847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437314    GT:AD:DP:GQ:PL    0/1:17,20:37:99:617,0,517
16    77775917    rs1133108    A    G    519.21    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.503;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.709;QD=18.54;ReadPosRankSum=-0.455;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437314    GT:AD:DP:GQ:PL    0/1:10,18:28:99:549,0,298
16    77776059    rs1133110    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUDT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437314    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    77910418    rs3751765    A    G    412.66    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.362;DB;DP=32;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.235;QD=12.9;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302536    GT:AD:DP:GQ:PL    0/1:18,14:32:99:443,0,610
16    77912966    rs3751767    T    C    228.73    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=17.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302536    GT:AD:DP:GQ:PL    0/1:5,8:13:99:259,0,158
16    77913219    rs9930395    C    T    183.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.468;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.263;QD=11.45;ReadPosRankSum=0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302536    GT:AD:DP:GQ:PL    0/1:8,8:16:99:213,0,187
16    78005533    rs111366    C    T    306.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302536    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:339,27,0
16    78061851    rs2072662    C    G    142.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.779;QD=11.86;ReadPosRankSum=1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299642    GT:AD:DP:GQ:PL    0/1:6,6:12:99:172,0,211
16    78062159    rs2075738    C    T    429.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.574;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.156;QD=20.44;ReadPosRankSum=-2.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299642    GT:AD:DP:GQ:PL    0/1:7,14:21:99:459,0,192
16    78062190    rs2735403    T    C    311.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=28.33;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299642    GT:AD:DP:GQ:PL    1/1:1,10:11:2.43:341,2,0
16    78062219    rs2204891    C    T    256.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299642    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
16    78064220    rs12917942    T    G    444.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299642    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:478,36,0
16    78064351    rs2293776    C    G    1067.84    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.406;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.109;QD=15.94;ReadPosRankSum=-1.867;SNPEFF_AMINO_ACID_CHANGE=L69;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_78064344_78066003;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299642    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1098,0,1048
16    78142209    rs4887937    T    C    223.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355860    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:256,21,0
16    78143607    rs2287972    C    T    788.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355860    GT:AD:DP:GQ:PL    1/1:0,27:27:66.17:822,66,0
16    78148744    rs2072587    T    A    375.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.243;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.273;QD=23.45;ReadPosRankSum=1.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355860    GT:AD:DP:GQ:PL    0/1:4,12:16:99:405,0,112
16    78148794    rs1469117    T    G    1793.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.3;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355860    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1827,144,0
16    78198192    rs2303191    T    C    313.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299644    GT:AD:DP:GQ:PL    1/1:0,13:13:27.08:347,27,0
16    78312497    rs8050128    C    A    183.19    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=2.502;DB;DP=32;Dels=0.0;FS=1.617;HRun=1;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=-0.109;QD=5.72;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299644    GT:AD:DP:GQ:PL    0/1:22,9:32:99:213,0,709
16    78420775    rs12918952    G    A    2119.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=A179T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_78420757_78420845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408984    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2152,160,0
16    78790592    rs7198697    C    A    162    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299644    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
16    78790765    rs7199110    C    T    1342.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299644    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1375,105,0
16    79245439    rs78590104    G    A    57.57    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=5.23;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299644    GT:AD:DP:GQ:PL    0/1:8,3:11:87.56:88,0,246
16    79245465    rs384216    T    C    658.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.473;QD=28.62;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299644    GT:AD:DP:GQ:PL    1/1:1,21:23:54.15:691,54,0
16    79245820    rs383362    G    T    1208.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=36.63;SNPEFF_AMINO_ACID_CHANGE=S242I;SNPEFF_CODON_CHANGE=aGt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_79245505_79246031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402655    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1242,93,0
16    79245956    rs2288034    C    G    2344.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.23;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=C287W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_79245505_79246031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402655    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2377,178,0
16    79245961    rs2288033    T    C    1921.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.18;MQ0=0;QD=30.03;SNPEFF_AMINO_ACID_CHANGE=V289A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_79245505_79246031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402655    GT:AD:DP:GQ:PL    1/1:0,63:64:99:1955,150,0
16    79246078    rs2288032    G    A    726.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.29;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.723;QD=13.21;ReadPosRankSum=1.601;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299644    GT:AD:DP:GQ:PL    0/1:27,27:54:99:757,0,719
16    79246190    rs1126520    A    G    138.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.668;QD=13.83;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299644    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,177
16    79633805    rs5818251    TGCC    T    379.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=109.0501;IndelType=D;MQ=60.0;MQ0=0;QD=17.24;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_79632682_79634611;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326043    GT:AD:DP:GQ:PL    1/1:10,11:22:30.10:421,30,0
16    79703829    rs4243177    A    G    218.27    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.355;QD=14.55;ReadPosRankSum=0.412;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC009159.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408403    GT:AD:DP:GQ:PL    0/1:6,9:15:99:248,0,190
16    80574886    rs9922406    T    C    278.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.28;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNLRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338542    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:311,24,0
16    80575167    rs7202313    C    G    35.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNLRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305904    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
16    80577098    rs8049769    G    T    1011.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9958;MQ=59.11;MQ0=0;QD=38.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNLRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305904    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1045,78,0
16    80581547    rs6564762    C    T    580.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNLRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305904    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:613,48,0
16    80581580    rs6564763    A    C    833.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNLRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305904    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:866,66,0
16    80581631    rs6564764    G    A    1524.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNLRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305904    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1558,114,0
16    80583276    rs12934612    T    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYNLRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305904    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
16    80718879    rs8049284    A    G    1006.32    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.015;DB;DP=76;Dels=0.0;FS=6.737;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.067;QD=13.24;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=L58;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_80718435_80719026;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDYL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299564    GT:AD:DP:GQ:PL    0/1:44,32:76:99:1036,0,1384
16    80719086    rs8047798    G    C    368.75    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.771;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.27;MQ0=0;MQRankSum=-1.237;QD=13.66;ReadPosRankSum=0.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDYL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299564    GT:AD:DP:GQ:PL    0/1:13,14:27:99:399,0,425
16    81009949    rs72813721    T    G    56.87    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=5.17;ReadPosRankSum=0.382;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486645    GT:AD:DP:GQ:PL    0/1:8,3:11:86.86:87,0,286
16    81015560    rs2549822    C    T    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C16orf61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219400    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
16    81050769    rs72528139    T    TA    362.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=29.7599;IndelType=I;MQ=58.11;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299572    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:405,27,0
16    81050965    rs935939    A    T    4096.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.2;MQ0=0;QD=35.32;SNPEFF_AMINO_ACID_CHANGE=E84D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81050931_81050990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299572    GT:AD:DP:GQ:PL    1/1:0,116:116:99:4097,298,0
16    81051327    rs935940    C    T    1174.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299572    GT:AD:DP:GQ:PL    1/1:0,34:34:90.30:1207,90,0
16    81053682    rs10602593    CT    C    368.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=59.5564;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=1.561;QD=18.44;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299572    GT:AD:DP:GQ:PL    1/1:1,19:20:29.33:411,29,0
16    81061827    rs2549887    G    A    1482.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=30.88;SNPEFF_AMINO_ACID_CHANGE=E254K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81061776_81061902;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428963    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1515,117,0
16    81062030    rs2549888    G    T    574.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305850    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:607,45,0
16    81062151    rs10579473    CTT    C    651.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DB;DP=30;FS=0.0;HRun=14;HaplotypeScore=325.8752;IndelType=D;MQ=56.15;MQ0=0;MQRankSum=-0.043;QD=21.72;ReadPosRankSum=2.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305850    GT:AD:DP:GQ:PL    1/1:3,27:30:79.35:694,79,0
16    81062171    rs2602428    C    T    1188.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.12;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305850    GT:AD:DP:GQ:PL    1/1:0,40:40:93.30:1222,93,0
16    81074737    rs2911157    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATMIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299575    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
16    81074800    rs2970077    A    G    320.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATMIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299575    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:354,27,0
16    81075289    rs2602454    C    G    133.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATMIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299575    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
16    81077915    rs2257378    T    C    1290.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.03;MQ0=0;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=A375;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81076766_81078779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATMIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539819    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1324,105,0
16    81087939    rs2549896    C    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378611    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    81094760    rs804884    A    G    1209.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.489;QD=31.02;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378611    GT:AD:DP:GQ:PL    1/1:1,38:39:96.30:1243,96,0
16    81095363    rs804885    C    T    3230.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=37.56;SNPEFF_AMINO_ACID_CHANGE=L197;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81094592_81095743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf46;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299578    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3264,250,0
16    81118289    rs7187102    C    T    314.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.19;MQ0=0;QD=24.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315467    GT:AD:DP:GQ:PL    1/1:0,12:13:30.06:347,30,0
16    81118316    rs111388132    CT    C    53.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=16;HaplotypeScore=61.7066;IndelType=D;MQ=47.82;MQ0=0;QD=6.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315467    GT:AD:DP:GQ:PL    1/1:2,5:8:16.72:95,17,0
16    81121145    rs7200400    T    C    333.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315467    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:366,27,0
16    81142257    rs1869348    T    C    1039.76    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.628;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-1.227;QD=15.75;ReadPosRankSum=-1.447;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    0/1:29,37:66:99:1070,0,939
16    81142358    rs4520846    C    A    232.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=11.63;ReadPosRankSum=-0.887;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    0/1:12,8:20:99:263,0,428
16    81145630    rs8053975    C    G    838.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=36.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:871,66,0
16    81145664    rs8054611    A    G    1689.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.94;MQ0=0;QD=33.78;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1722,135,0
16    81145675    rs8059153    T    C    1951.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.56;MQ0=0;QD=35.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1985,147,0
16    81145737    rs8059318    T    G    3831.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4304;MQ=58.95;MQ0=0;QD=29.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,128:128:99:3832,313,0
16    81145755    rs11647962    A    T    2379.61    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.896;DB;DP=156;Dels=0.0;FS=0.644;HRun=0;HaplotypeScore=0.9958;MQ=59.14;MQ0=0;MQRankSum=1.276;QD=15.25;ReadPosRankSum=0.846;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    0/1:70,86:156:99:2410,0,2140
16    81145807    rs8054182    C    G    6561.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=193;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2869;MQ=59.09;MQ0=0;QD=34.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,193:193:99:6561,482,0
16    81150865    rs6564823    T    C    149.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.4897;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=21.31;ReadPosRankSum=0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:1,6:7:15.04:182,15,0
16    81150938    rs6564824    G    C    267.91    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.035;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.89;MQ0=0;MQRankSum=1.162;QD=12.76;ReadPosRankSum=0.035;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    0/1:11,10:21:99:298,0,374
16    81151122    rs4889238    A    C    5338.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8633;MQ=59.57;MQ0=0;QD=32.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,162:162:99:5339,394,0
16    81151163    rs8053191    C    T    4461.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4462,337,0
16    81157324    rs4889241    G    A    2561.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=34.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2595,196,0
16    81157521    rs4889242    G    A    443.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525539    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:476,36,0
16    81164274    rs11150345    C    G    260.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:294,21,0
16    81167342    rs11150346    T    G    734.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=36.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:767,57,0
16    81173030    rs4889243    A    G    121.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,4:5:12.04:154,12,0
16    81173136    rs12918619    T    C    410.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.85;MQ0=0;QD=27.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,15:15:39.07:444,39,0
16    81173193    rs4889244    C    T    467.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.34;MQ0=0;QD=29.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:500,39,0
16    81180988    rs7194136    C    G    5660.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,164:164:99:5661,412,0
16    81181180    rs7194509    C    T    463.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:497,39,0
16    81183266    rs8044870    A    G    762.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529079    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:796,60,0
16    81185326    rs11649028    G    A    463.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529079    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:497,39,0
16    81185416    rs8061038    A    G    2387.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3913;MQ=59.68;MQ0=0;QD=33.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529079    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2421,178,0
16    81190294    rs4889251    G    A    90.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    81190308    rs4889252    G    T    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    81190328    rs4889253    G    A    204.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
16    81190601    rs1453325    T    C    575.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,18:18:51.13:608,51,0
16    81190613    rs1453324    A    G    612.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:646,51,0
16    81190708    rs1453323    A    C    182.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:215,18,0
16    81192672    rs4889254    C    T    396.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.258;DB;DP=28;Dels=0.0;FS=5.787;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.123;QD=14.16;ReadPosRankSum=-0.666;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    0/1:12,16:28:99:427,0,284
16    81193156    rs10871403    C    G    192.50    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.039;QD=9.17;ReadPosRankSum=0.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    0/1:13,8:21:99:222,0,433
16    81193433    rs734823    G    C    403.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:437,36,0
16    81194094    rs1123636    A    G    107.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=13.46;ReadPosRankSum=-1.368;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,141
16    81194382    rs2317117    T    C    1770.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6634;MQ=59.58;MQ0=0;QD=32.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1803,144,0
16    81194528    rs11647564    C    T    524.92    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.778;DB;DP=44;Dels=0.0;FS=2.958;HRun=1;HaplotypeScore=1.8533;MQ=59.48;MQ0=0;MQRankSum=0.203;QD=11.93;ReadPosRankSum=-0.155;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    0/1:26,18:44:99:555,0,830
16    81197030    rs113761504    T    TA    133.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=12;HaplotypeScore=34.0865;IndelType=I;MQ=60.0;MQ0=0;QD=22.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:175,18,0
16    81197117    rs4889255    A    G    697.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=58.99;MQ0=0;QD=30.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    1/1:0,23:23:63.16:730,63,0
16    81197467    rs10153089    C    A    97.04    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=10.78;ReadPosRankSum=0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    0/1:4,5:9:99:127,0,131
16    81198441    rs7191852    T    C    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=5.05;ReadPosRankSum=-1.638;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299598    GT:AD:DP:GQ:PL    0/1:4,4:8:70.37:70,0,112
16    81199429    rs12925622    G    A    632.77    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.052;DB;DP=49;Dels=0.0;FS=1.092;HRun=0;HaplotypeScore=1.983;MQ=55.62;MQ0=0;MQRankSum=-1.593;QD=12.91;ReadPosRankSum=0.671;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:26,23:49:99:663,0,755
16    81199520    rs12931217    T    C    603.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.78;MQ0=0;QD=22.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,27:27:57.10:637,57,0
16    81199538    rs12931227    T    C    166.90    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.086;DB;DP=25;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-2.375;QD=6.68;ReadPosRankSum=-2.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:11,13:25:99:197,0,353
16    81199544    rs12925771    G    A    110.08    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=24;Dels=0.0;FS=14.287;HRun=2;HaplotypeScore=0.8321;MQ=49.5;MQ0=0;MQRankSum=-2.677;QD=4.59;ReadPosRankSum=-2.554;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:11,13:24:99:140,0,348
16    81199555    rs12597040    A    G    48.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=22;Dels=0.0;FS=10.447;HRun=1;HaplotypeScore=1.4972;MQ=49.71;MQ0=0;MQRankSum=-3.349;QD=2.19;ReadPosRankSum=-1.904;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:11,11:22:78.11:78,0,377
16    81199572    rs12927442    A    G    407.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.23;MQ0=0;QD=22.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,18:18:36.11:441,36,0
16    81199600    rs12599110    G    A    41.42    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.369;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=-1.739;QD=2.44;ReadPosRankSum=1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:12,5:17:71.42:71,0,380
16    81201419    rs11639507    G    T    218.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
16    81201422    rs11639795    C    G    211.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
16    81201440    rs35726804    TG    T    130.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=8;HaplotypeScore=84.5159;IndelType=D;MQ=60.0;MQ0=0;QD=21.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:172,18,0
16    81201507    rs34188236    C    A    59.30    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=5.93;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:7,3:10:89.29:89,0,224
16    81201620    rs35292101    C    A    30.71    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.39;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:5,2:7:60.70:61,0,187
16    81201774    rs34172014    C    G    39.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.64;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:3,2:6:69.83:70,0,106
16    81201837    rs35055907    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    81201853    rs72822032    C    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    81204423    rs11640279    T    C    124.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.073;QD=10.4;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527937    GT:AD:DP:GQ:PL    0/1:6,6:12:99:155,0,201
16    81204720    rs35271642    C    A    280.09    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.133;QD=15.56;ReadPosRankSum=1.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527937    GT:AD:DP:GQ:PL    0/1:8,10:18:99:310,0,228
16    81208048    rs745210    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529791    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    81208056    rs745209    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529791    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
16    81208175    rs11150361    C    T    274.94    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=17.18;ReadPosRankSum=0.318;SNPEFF_AMINO_ACID_CHANGE=L232;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81204820_81208519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000527937    GT:AD:DP:GQ:PL    0/1:7,9:16:99:305,0,246
16    81208203    rs11150362    G    T    288.92    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=16.05;ReadPosRankSum=1.377;SNPEFF_AMINO_ACID_CHANGE=P223H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81204820_81208519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527937    GT:AD:DP:GQ:PL    0/1:8,10:18:99:319,0,225
16    81208515    rs12596941    G    A    815.73    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.85;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=16.99;ReadPosRankSum=-0.125;SNPEFF_AMINO_ACID_CHANGE=A119V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81204820_81208519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527937    GT:AD:DP:GQ:PL    0/1:21,27:48:99:846,0,667
16    81209207    rs2317114    T    C    667.32    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.011;DB;DP=49;Dels=0.0;FS=2.811;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.475;QD=13.62;ReadPosRankSum=-1.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:26,23:49:99:697,0,807
16    81211163    rs8044690    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    81213081    rs4889259    G    A    161.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
16    81213142    rs4889260    C    T    453.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:486,36,0
16    81213378    rs4889261    A    G    1214.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=L26P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81213250_81213391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527937    GT:AD:DP:GQ:PL    1/1:0,37:37:96.29:1247,96,0
16    81213422    rs4889262    C    T    766.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:799,60,0
16    81213593    rs4889264    G    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    81219131    .    C    G    242.13    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.373;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.796;QD=11.53;ReadPosRankSum=0.669;SNPEFF_AMINO_ACID_CHANGE=V655L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81219097_81219304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:10,11:21:99:272,0,263
16    81219329    rs9319563    G    T    799.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:833,63,0
16    81219396    rs9674042    T    A    358.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:392,30,0
16    81222227    rs11862005    G    A    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
16    81222672    rs4889271    T    C    926.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:960,72,0
16    81224234    rs12716909    T    C    3732.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9148;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,116:116:99:3733,292,0
16    81224423    rs11647179    G    A    1111.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1145,87,0
16    81232275    rs7205673    G    A    1112.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=P512L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81232267_81232671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1145,84,0
16    81232564    rs7194871    T    G    1554.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_AMINO_ACID_CHANGE=K416Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81232267_81232671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1587,117,0
16    81235903    rs8045756    C    G    215.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
16    81236516    rs4889275    G    A    81.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
16    81236525    rs4889276    T    A    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
16    81240912    rs12919179    G    C    53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
16    81240931    rs11150368    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
16    81241098    rs11150369    C    T    1481.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=22.45;SNPEFF_AMINO_ACID_CHANGE=P301;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81241093_81241240;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1514,156,0
16    81241100    rs11150370    G    C    1513.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=22.94;SNPEFF_AMINO_ACID_CHANGE=P301A;SNPEFF_CODON_CHANGE=Ccg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81241093_81241240;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1547,159,0
16    81241864    rs4889280    T    C    70.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
16    81241905    rs4889281    C    G    86.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
16    81241965    rs72831353    T    C    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.43;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,142
16    81242102    rs6420424    G    A    704.96    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=3.115;DB;DP=56;Dels=0.0;FS=4.129;HRun=0;HaplotypeScore=0.5784;MQ=59.17;MQ0=0;MQRankSum=0.527;QD=12.59;ReadPosRankSum=0.577;SNPEFF_AMINO_ACID_CHANGE=R252W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81242096_81242206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:31,25:56:99:735,0,884
16    81242148    rs55980345    GTT    G    1028.06    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=5.081;DB;DP=59;FS=0.995;HRun=3;HaplotypeScore=516.5676;IndelType=D;MQ=58.34;MQ0=0;MQRankSum=-0.195;QD=17.42;ReadPosRankSum=-1.393;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_81242096_81242206;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:32,27:59:99:1067,0,1567
16    81242194    rs6564838    T    C    1419.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.4;MQ0=0;QD=30.21;SNPEFF_AMINO_ACID_CHANGE=E221G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81242096_81242206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1453,114,0
16    81242198    rs7499011    G    A    536.48    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.16;DB;DP=44;Dels=0.0;FS=1.448;HRun=0;HaplotypeScore=0.0;MQ=57.22;MQ0=0;MQRankSum=0.702;QD=12.19;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=Q220*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_16_81242096_81242206;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:25,19:44:99:566,0,750
16    81242222    rs147165608    A    G    425.11    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.367;QD=12.5;ReadPosRankSum=0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:20,14:34:99:455,0,621
16    81242366    rs6564839    T    C    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    81242386    rs6564840    T    G    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
16    81248745    rs8060294    A    G    77.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=9.7;ReadPosRankSum=1.221;SNPEFF_AMINO_ACID_CHANGE=L173S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81248614_81248799;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:3,5:8:99:108,0,104
16    81248935    rs8044334    T    G    39.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:70,0,30
16    81249737    rs7186093    A    G    516.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,17:17:48.10:549,48,0
16    81249760    rs7186108    A    G    179.05    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=18;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=57.38;MQ0=0;MQRankSum=0.473;QD=9.95;ReadPosRankSum=1.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:10,8:18:99:209,0,263
16    81249764    rs7206918    G    A    539.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.38;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:572,45,0
16    81249927    rs7185774    C    T    434.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.657;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5253;MQ=59.28;MQ0=0;MQRankSum=0.433;QD=13.58;ReadPosRankSum=0.773;SNPEFF_AMINO_ACID_CHANGE=G129D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81249850_81250011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:16,16:32:99:465,0,433
16    81249954    rs7191351    T    A    1113.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.83;MQ0=0;MQRankSum=-0.385;QD=30.93;ReadPosRankSum=-0.578;SNPEFF_AMINO_ACID_CHANGE=Q120L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81249850_81250011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:1,35:36:70.56:1146,71,0
16    81253637    rs9924275    A    G    427.54    SnpCluster    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.076;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.151;QD=13.36;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:15,17:32:99:458,0,398
16    81253642    rs62052455    A    T    331.06    SnpCluster    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.296;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.15;MQ0=0;MQRankSum=-0.991;QD=10.03;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:16,17:33:99:361,0,432
16    81253643    rs9933579    G    C    335.47    SnpCluster    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.15;MQ0=0;MQRankSum=-1.351;QD=10.17;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:16,17:33:99:365,0,433
16    81253745    rs9934272    C    G    938.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.614;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.687;QD=16.75;ReadPosRankSum=-0.455;SNPEFF_AMINO_ACID_CHANGE=K77N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81253675_81253975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:24,32:56:99:968,0,737
16    81253759    rs9924371    A    G    2008.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.38;SNPEFF_AMINO_ACID_CHANGE=W73R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81253675_81253975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2041,162,0
16    81253917    rs9924530    A    G    1696.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.128;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.77;QD=30.85;ReadPosRankSum=1.091;SNPEFF_AMINO_ACID_CHANGE=V20A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81253675_81253975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    1/1:1,54:55:90.65:1730,91,0
16    81254023    rs35807120    T    TA    383.86    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.388;DB;DP=19;FS=2.35;HRun=0;HaplotypeScore=57.3343;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.204;QD=20.2;ReadPosRankSum=-0.857;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:9,10:19:99:423,0,321
16    81254052    rs7187615    G    A    166.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=15.13;ReadPosRankSum=-0.717;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PKD1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337114    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,171
16    81314496    rs7501331    C    T    355.26    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.692;DB;DP=37;Dels=0.0;FS=3.069;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.198;QD=9.6;ReadPosRankSum=0.263;SNPEFF_AMINO_ACID_CHANGE=A310V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81314462_81314567;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCMO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425577    GT:AD:DP:GQ:PL    0/1:23,14:37:99:385,0,650
16    81320830    rs8048342    A    G    767.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258168    GT:AD:DP:GQ:PL    1/1:1,25:26:69.18:801,69,0
16    81398520    rs4889313    G    A    571.01    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.245;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.11;MQ0=0;MQRankSum=0.032;QD=12.15;ReadPosRankSum=-1.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248272    GT:AD:DP:GQ:PL    0/1:23,24:47:99:601,0,668
16    81529174    rs2925994    A    G    34.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=4.87;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537098    GT:AD:DP:GQ:PL    0/1:3,3:7:64.07:64,0,100
16    81636936    .    C    T    287.01    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.367;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.9916;MQ=57.53;MQ0=0;MQRankSum=-1.021;QD=15.11;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537098    GT:AD:DP:GQ:PL    0/1:9,10:19:99:317,0,300
16    81694336    rs66465921    C    CT    753.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=9;HaplotypeScore=64.6882;IndelType=I;MQ=59.89;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398040    GT:AD:DP:GQ:PL    1/1:1,22:24:72.19:795,72,0
16    81703861    rs11150398    G    A    1431.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398040    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1464,108,0
16    81704033    rs8044418    C    G    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398040    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
16    81730381    rs9933631    C    A    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398040    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
16    81735012    rs3751859    G    A    43.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.51;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398040    GT:AD:DP:GQ:PL    0/1:1,2:3:14.67:73,0,15
16    81816733    rs8045964    C    T    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:2,2:4:70.42:70,0,74
16    81816787    rs4476171    T    A    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
16    81819486    rs4354929    C    G    116.80    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=17;Dels=0.0;FS=5.315;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.369;QD=6.87;ReadPosRankSum=-1.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:12,5:17:99:147,0,445
16    81819768    rs4586425    T    C    665.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_AMINO_ACID_CHANGE=A58;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81819548_81819787;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:698,57,0
16    81819820    rs4294811    G    A    140.23    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.093;QD=10.79;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:7,6:13:99:170,0,240
16    81887903    rs4072831    A    G    138.60    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=17.33;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:3,5:8:94.67:169,0,95
16    81887938    rs4522412    T    C    326.32    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.216;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9916;MQ=58.84;MQ0=0;MQRankSum=0.532;QD=16.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:9,11:20:99:356,0,290
16    81887957    rs4072830    A    C    365.13    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.418;QD=15.88;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:11,12:23:99:395,0,338
16    81888152    rs1143686    A    G    1197.48    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=81;Dels=0.0;FS=11.177;HRun=0;HaplotypeScore=0.9469;MQ=59.43;MQ0=0;MQRankSum=0.184;QD=14.78;ReadPosRankSum=-1.573;SNPEFF_AMINO_ACID_CHANGE=L99;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81888049_81888192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:40,41:81:99:1227,0,1295
16    81888237    rs4072828    G    C    902    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=45;Dels=0.0;FS=3.413;HRun=0;HaplotypeScore=1.9997;MQ=60.0;MQ0=0;MQRankSum=0.396;QD=20.04;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:15,30:45:99:932,0,472
16    81888344    rs7184243    G    A    314.03    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.054;QD=19.63;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:6,10:16:99:344,0,199
16    81891722    rs72400582    GA    G    141.79    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=104.1217;IndelType=D;MQ=51.13;MQ0=0;MQRankSum=1.872;QD=10.13;ReadPosRankSum=0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:8,6:14:99:181,0,304
16    81891998    rs4341734    G    C    1565.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.6;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1598,120,0
16    81892041    rs5818357    GGGA    G    599.31    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=256.2832;IndelType=D;MQ=51.9;MQ0=0;MQRankSum=-1.765;QD=23.05;ReadPosRankSum=-0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:11,15:26:99:638,0,429
16    81892043    rs67774541    GAAAA    G    214.69    PASS    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.532;DB;DP=26;FS=0.0;HRun=13;HaplotypeScore=312.8592;IndelType=D;MQ=51.9;MQ0=0;MQRankSum=1.63;QD=8.26;ReadPosRankSum=0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:19,7:26:99:254,0,117
16    81892708    rs4888183    T    A    364.51    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.561;QD=11.76;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:16,14:31:99:395,0,489
16    81892895    rs41309272    C    T    155.95    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=22.28;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:1,6:7:17.19:186,0,17
16    81902570    rs7202250    T    C    73.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.28;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,107
16    81902583    rs72837429    C    G    99.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.48;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:4,4:8:99:130,0,141
16    81902600    rs7195281    G    C    183.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=20.34;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:3,6:9:69.75:213,0,70
16    81902729    rs77062887    GC    G    1433.40    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.483;DB;DP=84;FS=7.078;HRun=1;HaplotypeScore=313.2233;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=1.285;QD=17.06;ReadPosRankSum=1.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:42,42:84:99:1472,0,1653
16    81902797    rs12445580    A    G    3065.64    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.305;DB;DP=200;Dels=0.0;FS=1.176;HRun=0;HaplotypeScore=1.6809;MQ=60.15;MQ0=0;MQRankSum=-1.157;QD=15.33;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:93,107:200:99:3096,0,2822
16    81903055    rs4889420    G    A    59.56    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=5.96;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:7,3:10:89.55:90,0,264
16    81904433    rs67362927    TG    T    292.91    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=3.134;DB;DP=34;FS=1.67;HRun=2;HaplotypeScore=106.1772;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=0.0;QD=8.61;ReadPosRankSum=-1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:23,11:34:99:332,0,849
16    81914583    rs11865395    C    T    462.12    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.194;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.494;QD=14.91;ReadPosRankSum=-1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:15,16:31:99:492,0,332
16    81925026    .    C    T    159.14    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.564;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.282;QD=6.92;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:15,8:23:99:189,0,512
16    81929488    rs1143688    C    T    282.36    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.6;DB;DP=38;Dels=0.0;FS=3.384;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.114;QD=7.43;ReadPosRankSum=0.243;SNPEFF_AMINO_ACID_CHANGE=D383;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81929412_81929532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:26,12:38:99:312,0,697
16    81939150    rs4435248    G    C    398.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=26.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:431,33,0
16    81941319    rs1143689    C    T    1102.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=29.81;SNPEFF_AMINO_ACID_CHANGE=A499;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_81941290_81941379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:0,36:36:81.27:1136,81,0
16    81941444    rs71400183    C    T    156.34    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.387;QD=14.21;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:5,6:11:99:186,0,137
16    81953081    rs12448130    T    C    1456.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1489,114,0
16    81953368    rs12448152    A    G    227.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:260,21,0
16    81954789    rs12446127    C    G    305.37    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=18;Dels=0.0;FS=6.245;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.256;QD=16.97;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:6,12:18:99:335,0,198
16    81956927    rs4485360    C    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    81960497    rs6564938    A    C    258.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.625;QD=14.38;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:9,9:18:99:289,0,310
16    81961002    rs3813010    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=16.26;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:80,6,0
16    81962071    rs4366702    A    C    306.13    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=23.55;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:4,9:13:99:336,0,127
16    81971582    rs4258608    A    G    272.88    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6649;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=14.36;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:10,9:19:99:303,0,362
16    81972283    rs12596299    T    G    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,71
16    81972289    rs4888192    A    C    103.68    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=17.28;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:2,4:6:63.18:134,0,63
16    81973442    rs11150425    T    C    930.70    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=1.695;DB;DP=44;Dels=0.0;FS=2.717;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=21.15;ReadPosRankSum=-0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:15,29:44:99:961,0,483
16    81973474    rs4405546    C    A    442.42    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.297;DB;DP=54;Dels=0.0;FS=1.375;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=8.19;ReadPosRankSum=-2.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:35,19:54:99:472,0,1160
16    81973788    rs4996272    T    C    82.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=13.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359376    GT:AD:DP:GQ:PL    0/1:2,4:6:60.39:113,0,60
16    82068897    rs4445895    T    C    133.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=11.15;ReadPosRankSum=-0.583;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_82068866_82069294;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199936    GT:AD:DP:GQ:PL    0/1:6,6:12:99:164,0,212
16    82124776    rs2955154    G    T    713.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199936    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:747,57,0
16    82131578    rs2955160    C    G    275.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=25.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199936    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:309,27,0
16    82182832    rs11859599    C    G    364.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:397,30,0
16    82185320    rs7203990    A    G    90.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    82197883    rs2303266    G    A    534.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:567,42,0
16    82203705    rs2303265    A    C    377.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.52;MQ0=0;QD=25.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,15:15:33.05:410,33,0
16    82203711    rs2303264    G    T    379.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=27.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,14:14:33.05:412,33,0
16    82203742    rs1134847    T    C    474.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.25;MQ0=0;QD=27.9;SNPEFF_AMINO_ACID_CHANGE=L13;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_82203730_82203831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,17:17:39.10:507,39,0
16    82203758    rs2303262    C    T    442.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.6;SNPEFF_AMINO_ACID_CHANGE=R8K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_82203730_82203831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,18:18:39.09:476,39,0
16    82203768    rs2303261    G    T    385.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.97;MQ0=0;QD=24.06;SNPEFF_AMINO_ACID_CHANGE=R5;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_82203730_82203831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,15:16:33.10:418,33,0
16    82203786    rs2303260    C    G    186.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.06;MQ0=0;QD=18.64;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_82203730_82203831;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPHOSPH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258169    GT:AD:DP:GQ:PL    1/1:0,10:10:18.05:219,18,0
16    82875750    rs12921382    T    C    63.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:95,9,0
16    83065664    rs6565105    G    A    952.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_AMINO_ACID_CHANGE=S116;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_83065615_83065823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:985,72,0
16    83065904    rs7197530    T    C    379.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:413,33,0
16    83065965    rs2228685    T    A    83.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
16    83159350    rs7196370    A    C    105.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:138,12,0
16    83250824    rs4077621    C    A    123.70    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.864;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.482;MQ=58.71;MQ0=0;MQRankSum=0.754;QD=6.87;ReadPosRankSum=-0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:11,7:18:99:154,0,415
16    83251210    rs4572385    G    A    268.89    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=57.87;MQ0=0;MQRankSum=1.259;QD=8.15;ReadPosRankSum=-1.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:21,12:33:99:299,0,669
16    83251259    rs4077622    C    A    60.35    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=0.296;QD=5.49;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:8,3:11:90.34:90,0,199
16    83434063    rs7202692    C    T    162.06    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=22;Dels=0.0;FS=7.282;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.263;QD=7.37;ReadPosRankSum=-1.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:14,8:22:99:192,0,419
16    83434387    rs7185293    G    A    130.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.336;QD=13.0;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:5,5:10:99:160,0,172
16    83519982    rs17686433    G    T    441.91    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.557;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.018;QD=14.73;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:14,16:30:99:472,0,498
16    83520078    rs2306907    G    A    1230.61    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.676;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=59.5;MQ0=0;MQRankSum=1.148;QD=12.18;ReadPosRankSum=-0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:52,49:101:99:1261,0,1449
16    83781604    rs16961631    T    C    813.11    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=3.832;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.56;MQ0=0;MQRankSum=-1.398;QD=15.64;ReadPosRankSum=0.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:22,30:52:99:843,0,712
16    83781919    rs889490    T    C    1877.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.751;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=0.587;QD=17.38;ReadPosRankSum=1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    0/1:48,60:108:99:1907,0,1431
16    83816621    rs153653    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    83816828    rs153654    A    G    1109.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.18;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268613    GT:AD:DP:GQ:PL    1/1:0,36:36:96.27:1142,96,0
16    83817019    rs1048612    A    G    1836.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8941;MQ=59.22;MQ0=0;QD=31.13;SNPEFF_AMINO_ACID_CHANGE=A251;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_83816859_83817082;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539548    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1870,150,0
16    83828453    rs464557    A    G    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540531    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
16    83842792    rs8053753    G    T    562.18    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=4.096;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.132;QD=21.62;ReadPosRankSum=-0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433866    GT:AD:DP:GQ:PL    0/1:9,17:26:99:592,0,207
16    83843061    .    TC    T    77.52    PASS    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=3.097;DP=30;FS=9.472;HRun=1;HaplotypeScore=251.4113;IndelType=D;MQ=46.88;MQ0=0;MQRankSum=-2.888;QD=2.58;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433866    GT:AD:DP:GQ:PL    0/1:25,5:30:99:117,0,516
16    83933296    rs446036    T    C    114.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLYCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262430    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:147,12,0
16    83982960    rs4782864    C    T    181.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.813;QD=15.16;ReadPosRankSum=1.718;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393306    GT:AD:DP:GQ:PL    0/1:6,6:12:99:212,0,213
16    83983071    rs4782865    C    T    347.46    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=35;Dels=0.0;FS=3.256;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.24;QD=9.93;ReadPosRankSum=-0.177;SNPEFF_AMINO_ACID_CHANGE=P6L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_83982672_83983111;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343939    GT:AD:DP:GQ:PL    0/1:22,13:35:99:377,0,582
16    83984844    rs2244899    A    C    33.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=11.01;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=M57L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_83984733_83984892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGIN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343939    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:63,0,20
16    83992785    rs2665296    G    A    526.26    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=3.21;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.55;MQ0=0;MQRankSum=0.731;QD=18.15;ReadPosRankSum=0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343939    GT:AD:DP:GQ:PL    0/1:12,17:29:99:556,0,318
16    83994569    rs2136662    G    T    226.95    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.976;DB;DP=23;Dels=0.0;FS=7.546;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.409;QD=9.87;ReadPosRankSum=0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343939    GT:AD:DP:GQ:PL    0/1:14,9:23:99:257,0,388
16    83998662    rs733728    A    G    636.86    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.879;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.059;QD=11.58;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343939    GT:AD:DP:GQ:PL    0/1:30,25:55:99:667,0,849
16    83999033    rs173776    A    G    228.34    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.31;DB;DP=22;Dels=0.0;FS=1.922;HRun=1;HaplotypeScore=0.0;MQ=48.43;MQ0=0;MQRankSum=0.533;QD=10.38;ReadPosRankSum=-1.67;SNPEFF_AMINO_ACID_CHANGE=S285;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_83998667_83999937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSGIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361711    GT:AD:DP:GQ:PL    0/1:12,9:22:99:258,0,379
16    84034552    rs9934787    G    A    115.76    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.15;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305202    GT:AD:DP:GQ:PL    0/1:1,4:5:24.27:146,0,24
16    84036227    rs2280027    T    C    77.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.92;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NECAB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305202    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
16    84043380    rs7196330    A    G    100.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=8.41;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:8,4:12:99:131,0,278
16    84046402    rs11864124    G    C    63.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.59;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:3,3:6:93.52:94,0,97
16    84046412    rs11149615    T    C    163.54    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=52.65;MQ0=0;MQRankSum=-0.731;QD=16.35;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:3,7:10:79.65:194,0,80
16    84046432    rs11864037    A    G    250.68    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.09;MQ0=0;MQRankSum=-1.24;QD=16.71;ReadPosRankSum=-0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:4,11:15:90.68:281,0,91
16    84046490    rs11864162    G    A    224.78    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=11.3296;MQ=52.91;MQ0=0;MQRankSum=-1.708;QD=7.25;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:14,17:31:99:255,0,133
16    84046499    rs11864095    C    T    305.11    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=33;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=9.333;MQ=55.06;MQ0=0;MQRankSum=-0.462;QD=8.97;ReadPosRankSum=0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:13,20:33:99:335,0,341
16    84050037    rs12929392    G    C    114.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.33;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:3,4:7:96.05:144,0,96
16    84050209    rs77876966    G    A    814.38    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=1.269;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.909;QD=18.1;ReadPosRankSum=0.083;SNPEFF_AMINO_ACID_CHANGE=L359;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84050124_84050332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:16,29:45:99:844,0,440
16    84056325    rs5818479    CTT    C    267.50    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=37.1351;IndelType=D;MQ=59.5;MQ0=0;MQRankSum=0.38;QD=22.29;ReadPosRankSum=-1.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:5,7:12:99:307,0,269
16    84070238    rs8057543    C    A    111.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.63;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:2,4:6:49.87:142,0,50
16    84070500    rs1317524    C    G    40.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=5.85;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=S65;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84070307_84070505;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:4,3:7:69.71:71,0,70
16    84075563    rs1105355    C    A    734.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.582;DB;DP=46;Dels=0.0;FS=1.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=15.98;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299709    GT:AD:DP:GQ:PL    0/1:23,23:46:99:765,0,639
16    84089536    rs11415464    T    TG    644.26    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.514;DB;DP=46;FS=0.0;HRun=4;HaplotypeScore=115.7435;IndelType=I;MQ=60.47;MQ0=0;MQRankSum=0.766;QD=14.01;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:26,20:46:99:683,0,680
16    84093062    rs2280024    G    A    132.77    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=18;Dels=0.0;FS=2.029;HRun=5;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-1.54;QD=7.38;ReadPosRankSum=1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:11,7:18:99:163,0,328
16    84101240    rs3835163    C    CACATTTT    1451.57    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.248;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=154.9245;IndelType=I;MQ=51.38;MQ0=0;MQRankSum=-2.771;QD=50.05;ReadPosRankSum=-1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:18,7:29:99:1491,0,1032
16    84101677    rs71404145    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    84101687    rs17849036    T    C    45.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:76,0,33
16    84101875    rs3817151    C    T    1089.36    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.203;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.63;MQ0=0;MQRankSum=-0.05;QD=17.57;ReadPosRankSum=1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:26,36:62:99:1119,0,872
16    84102135    rs870584    G    C    373.28    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.432;DB;DP=40;Dels=0.0;FS=8.46;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=9.33;ReadPosRankSum=0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:26,14:40:99:403,0,832
16    84103181    rs28706499    G    C    64.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=21.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    1/1:0,3:3:9:97,9,0
16    84104478    rs1980011    C    T    199.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:232,18,0
16    84115393    rs12933523    G    A    366.12    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.757;DB;DP=41;Dels=0.0;FS=4.316;HRun=1;HaplotypeScore=0.0;MQ=56.54;MQ0=0;MQRankSum=0.572;QD=8.93;ReadPosRankSum=-1.334;SNPEFF_AMINO_ACID_CHANGE=L469;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84115352_84115513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:23,17:41:99:396,0,556
16    84124604    rs11325729    CA    C    115.57    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DB;DP=36;FS=2.645;HRun=16;HaplotypeScore=291.9613;IndelType=D;MQ=53.91;MQ0=0;MQRankSum=0.307;QD=3.21;ReadPosRankSum=1.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:19,14:36:92.41:155,0,92
16    84125629    rs2292321    G    C    42.05    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.51;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:72,0,32
16    84132628    rs10690442    G    GAC    1712.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=68.5185;IndelType=I;MQ=60.65;MQ0=0;QD=55.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    1/1:0,30:31:93.32:1755,93,0
16    84135453    rs1049884    A    T    564.99    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.046;DB;DP=37;Dels=0.0;FS=5.905;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.201;QD=15.27;ReadPosRankSum=0.696;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_84135226_84135712;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:15,22:37:99:595,0,518
16    84135493    rs907045    A    G    384.38    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.009;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.053;QD=21.35;ReadPosRankSum=-0.584;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_84135226_84135712;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:4,14:18:99:414,0,103
16    84135515    rs11550471    C    T    260.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.479;QD=21.72;ReadPosRankSum=0.74;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_84135226_84135712;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343411    GT:AD:DP:GQ:PL    0/1:3,9:12:82.73:291,0,83
16    84158248    rs4378600    G    C    387.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.193;DB;DP=48;Dels=0.0;FS=4.546;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-0.449;QD=8.08;ReadPosRankSum=0.142;SNPEFF_AMINO_ACID_CHANGE=S272C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84155744_84158333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSDL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434463    GT:AD:DP:GQ:PL    0/1:30,18:48:99:418,0,963
16    84203612    rs17856705    A    G    620.41    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.309;DB;DP=48;Dels=0.0;FS=2.597;HRun=1;HaplotypeScore=1.7987;MQ=60.0;MQ0=0;MQRankSum=-0.883;QD=12.93;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=K393R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84203465_84203659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334315    GT:AD:DP:GQ:PL    0/1:23,24:48:99:650,0,781
16    84205726    rs12926474    G    A    402.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.802;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.249;QD=19.18;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334315    GT:AD:DP:GQ:PL    0/1:9,12:21:99:433,0,217
16    84209634    rs2288019    C    G    412.58    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.149;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=1.54;QD=11.79;ReadPosRankSum=-0.712;SNPEFF_AMINO_ACID_CHANGE=L598;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84209539_84209905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378553    GT:AD:DP:GQ:PL    0/1:19,16:35:99:443,0,646
16    84209815    rs2288021    C    G    458.61    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.284;QD=15.81;ReadPosRankSum=0.109;SNPEFF_AMINO_ACID_CHANGE=L659V;SNPEFF_CODON_CHANGE=Cta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84209539_84209905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378553    GT:AD:DP:GQ:PL    0/1:14,15:29:99:489,0,408
16    84211483    rs8692    C    T    38.67    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.845;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=2.27;ReadPosRankSum=-1.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537450    GT:AD:DP:GQ:PL    0/1:12,5:17:68.66:69,0,405
16    84212853    rs4150174    G    C    160.99    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=17.89;ReadPosRankSum=-1.179;SNPEFF_AMINO_ACID_CHANGE=P291;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84212355_84213457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544090    GT:AD:DP:GQ:PL    0/1:2,7:9:62.92:191,0,63
16    84213434    rs2230129    A    T    139.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.779;QD=11.62;ReadPosRankSum=1.073;SNPEFF_AMINO_ACID_CHANGE=L481M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84211464_84213457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341690    GT:AD:DP:GQ:PL    0/1:6,6:12:99:169,0,152
16    84213684    rs4150167    C    T    190.65    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=24;Dels=0.0;FS=4.649;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.477;QD=7.94;ReadPosRankSum=-0.06;SNPEFF_AMINO_ACID_CHANGE=G429R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84213552_84213686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341690    GT:AD:DP:GQ:PL    0/1:15,9:24:99:221,0,488
16    84214837    rs2303234    G    C    362.11    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DB;DP=40;Dels=0.0;FS=3.96;HRun=2;HaplotypeScore=0.6651;MQ=59.42;MQ0=0;MQRankSum=-1.901;QD=9.05;ReadPosRankSum=0.602;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378553    GT:AD:DP:GQ:PL    0/1:19,21:40:99:392,0,556
16    84215314    rs3815814    T    C    378.99    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=58.63;MQ0=0;MQRankSum=-1.175;QD=11.15;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378553    GT:AD:DP:GQ:PL    0/1:18,16:34:99:409,0,568
16    84215390    rs2230127    T    C    877.81    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.584;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.33;MQ0=0;MQRankSum=-0.058;QD=12.72;ReadPosRankSum=-0.327;SNPEFF_AMINO_ACID_CHANGE=A239;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84215352_84215469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341690    GT:AD:DP:GQ:PL    0/1:35,34:69:99:908,0,896
16    84216546    rs4150140    A    G    111.78    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.36;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378553    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:142,0,25
16    84216585    rs4150139    T    C    194.63    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=17.69;ReadPosRankSum=2.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378553    GT:AD:DP:GQ:PL    0/1:4,7:11:99:225,0,118
16    84216606    rs4150138    C    T    195.78    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=12.24;ReadPosRankSum=1.799;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378553    GT:AD:DP:GQ:PL    0/1:9,7:16:99:226,0,303
16    84217062    rs4782591    C    T    325.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.03;SNPEFF_AMINO_ACID_CHANGE=C24Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84217016_84217113;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341690    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:358,30,0
16    84228612    rs35353940    CT    C    301.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=35.5991;IndelType=D;MQ=60.72;MQ0=0;MQRankSum=1.164;QD=20.13;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268624    GT:AD:DP:GQ:PL    0/1:5,10:15:99:341,0,180
16    84229436    rs62049905    G    A    71.78    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=6.53;ReadPosRankSum=1.036;SNPEFF_AMINO_ACID_CHANGE=S356;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84229421_84229650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315906    GT:AD:DP:GQ:PL    0/1:7,4:11:99:102,0,167
16    84229559    rs2303238    T    C    631.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=S397;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84229421_84229650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315906    GT:AD:DP:GQ:PL    1/1:0,20:20:51.15:664,51,0
16    84229580    rs2303239    C    T    252.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=14.04;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=A404;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84229421_84229650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315906    GT:AD:DP:GQ:PL    0/1:9,9:18:99:283,0,236
16    84230082    .    AACCCCTTC    A    414.68    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DP=15;FS=5.497;HRun=0;HaplotypeScore=220.5409;IndelType=D;MQ=45.61;MQ0=0;MQRankSum=-3.298;QD=27.65;ReadPosRankSum=2.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009123.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536986    GT:AD:DP:GQ:PL    0/1:9,6:15:99:454,0,698
16    84230091    .    GCTCAA    G    252.97    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DP=16;FS=2.187;HRun=0;HaplotypeScore=213.8871;IndelType=D;MQ=46.64;MQ0=0;MQRankSum=-3.308;QD=15.81;ReadPosRankSum=2.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009123.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536986    GT:AD:DP:GQ:PL    0/1:10,6:16:99:292,0,704
16    84230235    rs16962986    T    C    748.44    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.328;DB;DP=58;Dels=0.0;FS=3.742;HRun=0;HaplotypeScore=0.0;MQ=57.98;MQ0=0;MQRankSum=-1.738;QD=12.9;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009123.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536986    GT:AD:DP:GQ:PL    0/1:30,28:58:99:778,0,899
16    84230376    rs2303242    T    C    264.44    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.738;DB;DP=24;Dels=0.0;FS=2.141;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.2;QD=11.02;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009123.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536986    GT:AD:DP:GQ:PL    0/1:9,15:24:99:294,0,298
16    84255809    rs56796255    T    C    980.87    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=53;Dels=0.0;FS=2.766;HRun=0;HaplotypeScore=1.5449;MQ=59.56;MQ0=0;MQRankSum=1.458;QD=18.51;ReadPosRankSum=-1.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308251    GT:AD:DP:GQ:PL    0/1:14,38:53:99:1011,0,406
16    84256410    rs7196482    C    T    145.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.097;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.323;QD=10.39;ReadPosRankSum=0.968;SNPEFF_AMINO_ACID_CHANGE=G325R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84255816_84256626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308251    GT:AD:DP:GQ:PL    0/1:8,6:14:99:175,0,222
16    84256732    rs7197070    C    T    61.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.27;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308251    GT:AD:DP:GQ:PL    0/1:3,3:6:91.08:92,0,91
16    84270381    rs244811    G    A    709.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=S237;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84270336_84271131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308251    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:743,57,0
16    84270476    rs11646443    G    A    261.17    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.692;DB;DP=28;Dels=0.0;FS=3.831;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.083;QD=9.33;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=R206W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84270336_84271131;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308251    GT:AD:DP:GQ:PL    0/1:18,10:28:99:291,0,451
16    84271193    rs11647665    C    T    119.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308251    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
16    84328347    rs375427    T    C    198.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_84328252_84328721;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:231,18,0
16    84328494    rs400345    C    T    363.08    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.362;QD=19.11;ReadPosRankSum=0.537;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_16_84328252_84328721;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    0/1:8,11:19:99:393,0,261
16    84328752    rs369797    G    T    1182.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7256;MQ=59.38;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    1/1:0,37:37:93.29:1216,93,0
16    84328756    rs401782    G    C    1092.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9863;MQ=59.38;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    1/1:0,37:37:84.26:1126,84,0
16    84328826    rs429725    A    G    470.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:503,39,0
16    84351828    rs187372    G    A    276    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.244;QD=16.24;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    0/1:7,10:17:99:306,0,122
16    84352115    rs6564012    A    C    75.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:107,9,0
16    84357925    rs244786    G    T    621.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:654,51,0
16    84358121    rs244787    A    C    1378.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1412,117,0
16    84358260    rs244788    C    T    133.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219454    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
16    84432023    rs6564033    C    A    34.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.537;QD=5.71;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:3,3:6:64.27:64,0,108
16    84441989    rs9935544    C    T    388.14    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=37;Dels=0.0;FS=9.186;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=10.49;ReadPosRankSum=-0.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:20,17:37:99:418,0,591
16    84444113    rs2291006    C    T    1519.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1553,114,0
16    84444349    rs247818    A    C    1475.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=57.41;MQ0=0;QD=29.52;SNPEFF_AMINO_ACID_CHANGE=M165L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84444310_84444371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1509,111,0
16    84455766    rs2163036    C    T    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:68,0,68
16    84455781    rs3943846    A    G    33.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:63,0,32
16    84455961    rs2288573    A    G    497.82    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=40;Dels=0.0;FS=4.908;HRun=1;HaplotypeScore=0.9332;MQ=58.84;MQ0=0;MQRankSum=0.758;QD=12.45;ReadPosRankSum=-0.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:21,19:40:99:528,0,701
16    84456439    rs72383087    A    AT    136.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=14;FS=0.0;HRun=11;HaplotypeScore=41.3948;IndelType=I;MQ=62.28;MQ0=0;MQRankSum=0.38;QD=9.72;ReadPosRankSum=-1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:7,7:14:79.73:175,0,80
16    84456642    rs247814    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
16    84456705    rs185063    C    T    175.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:209,18,0
16    84459512    rs1887    G    C    411.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.638;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4003;MQ=58.89;MQ0=0;MQRankSum=-0.419;QD=9.81;ReadPosRankSum=-0.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:24,18:42:99:442,0,850
16    84459557    rs247805    T    C    443.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,16:16:42.09:477,42,0
16    84472552    rs247906    A    G    37.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.5;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:2,2:4:57.86:68,0,58
16    84472599    rs2241641    G    C    70.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.04;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,144
16    84472972    rs247905    G    A    1857.77    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.541;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=60.14;MQ0=0;MQRankSum=-1.199;QD=18.96;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:38,60:98:99:1888,0,1213
16    84473004    rs10624155    C    CTT    2488.04    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-9.099;DB;DP=135;FS=0.0;HRun=2;HaplotypeScore=551.6629;IndelType=I;MQ=60.11;MQ0=0;MQRankSum=0.798;QD=18.29;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:81,53:135:99:2527,0,2905
16    84473137    rs247904    G    C    3720    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.5468;MQ=59.58;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3720,283,0
16    84473192    rs931077    A    G    734.27    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.384;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.508;QD=12.45;ReadPosRankSum=-0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:33,26:59:99:764,0,1086
16    84473195    rs247903    T    A    2061.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2095,157,0
16    84474484    rs2303853    G    A    41.36    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.493;QD=2.18;ReadPosRankSum=-2.563;SNPEFF_AMINO_ACID_CHANGE=G260S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84474463_84474564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420010    GT:AD:DP:GQ:PL    0/1:13,6:19:71.36:71,0,388
16    84476022    rs2288582    A    G    802.75    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.157;DB;DP=73;Dels=0.0;FS=3.962;HRun=0;HaplotypeScore=4.3814;MQ=59.17;MQ0=0;MQRankSum=1.1;QD=11.0;ReadPosRankSum=0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:39,34:73:99:833,0,1260
16    84476297    rs2288580    G    C    277.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;MQRankSum=0.177;QD=18.53;ReadPosRankSum=1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:6,9:15:99:308,0,202
16    84476301    rs2288579    G    A    269.36    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.33;MQ0=0;MQRankSum=-0.4;QD=19.24;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:5,9:14:99:299,0,171
16    84481995    rs247891    T    C    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    84485395    rs116851095    C    T    585.55    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=0.482;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.2;MQ0=0;MQRankSum=-1.399;QD=20.19;ReadPosRankSum=0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:10,19:29:99:616,0,307
16    84485423    rs247886    G    A    176.94    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=2.589;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.87;MQ0=0;MQRankSum=0.595;QD=4.32;ReadPosRankSum=-2.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:31,10:41:99:207,0,864
16    84485573    rs247885    C    A    3362.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8988;MQ=59.76;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=L418;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84485527_84485697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420010    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3362,253,0
16    84485677    rs62640926    T    A    595.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.985;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.088;QD=15.67;ReadPosRankSum=-0.701;SNPEFF_AMINO_ACID_CHANGE=L453Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84485527_84485697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420010    GT:AD:DP:GQ:PL    0/1:19,19:38:99:625,0,600
16    84486700    rs193704    G    A    34.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.71;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:4,2:6:64.28:64,0,92
16    84486867    rs2435172    A    G    2386.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6462;MQ=58.95;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2420,216,0
16    84486903    rs114737121    C    T    1538.10    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.328;DB;DP=124;Dels=0.0;FS=0.73;HRun=2;HaplotypeScore=3.1209;MQ=59.25;MQ0=0;MQRankSum=0.858;QD=12.4;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:64,60:124:99:1568,0,1761
16    84487056    rs247884    C    T    545.13    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=5.102;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.349;QD=15.14;ReadPosRankSum=0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:19,17:36:99:575,0,526
16    84492559    rs919422    C    A    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    84492683    rs693552    A    C    808.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:841,63,0
16    84493080    rs3743655    A    G    37.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=7.59;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:3,2:5:67.92:68,0,68
16    84493081    rs437299    G    A    35.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=7.02;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:2,3:5:65.07:65,0,68
16    84494020    rs393515    G    T    34.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
16    84494168    rs62050916    A    T    750.29    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.116;DB;DP=48;Dels=0.0;FS=2.211;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=2.931;QD=15.63;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:25,23:48:99:780,0,852
16    84494450    rs381467    G    A    1181.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1214,93,0
16    84494586    rs2432112    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    84495224    rs369750    A    G    1161.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1195,111,0
16    84495509    rs62050919    G    A    1453.09    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.462;DB;DP=92;Dels=0.0;FS=0.914;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.109;QD=15.79;ReadPosRankSum=-0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:42,50:92:99:1483,0,1298
16    84495770    rs2241639    G    A    766.68    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.007;DB;DP=46;Dels=0.0;FS=6.67;HRun=1;HaplotypeScore=0.8667;MQ=59.5;MQ0=0;MQRankSum=-0.268;QD=16.67;ReadPosRankSum=0.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:17,29:46:99:797,0,424
16    84495841    rs2241638    A    G    199.86    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=12.49;ReadPosRankSum=-1.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:9,7:16:99:230,0,320
16    84497064    rs691818    T    C    85.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
16    84497169    rs891258    G    A    761.75    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6166;MQ=58.84;MQ0=0;MQRankSum=1.01;QD=19.04;ReadPosRankSum=1.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:14,26:40:99:792,0,344
16    84497186    rs2241634    C    T    416.34    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DB;DP=50;Dels=0.0;FS=6.274;HRun=0;HaplotypeScore=6.435;MQ=58.6;MQ0=0;MQRankSum=1.425;QD=8.33;ReadPosRankSum=0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262429    GT:AD:DP:GQ:PL    0/1:34,16:50:99:446,0,1106
16    84513463    rs899250    T    G    160.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.83;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:194,15,0
16    84514341    rs444170    A    G    1079.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1112,84,0
16    84516090    rs392199    A    G    325.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:358,27,0
16    84516309    rs433293    G    A    184.52    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=13;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=14.19;ReadPosRankSum=0.38;SNPEFF_AMINO_ACID_CHANGE=N295;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84516198_84516316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535580    GT:AD:DP:GQ:PL    0/1:5,7:13:99:215,0,176
16    84520080    rs397038    T    C    207.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
16    84520223    rs431629    A    T    1433.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    1/1:1,45:46:99:1467,111,0
16    84520292    rs3743667    C    T    670.40    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.519;DB;DP=51;Dels=0.0;FS=3.925;HRun=2;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=0.123;QD=13.15;ReadPosRankSum=-1.463;SNPEFF_AMINO_ACID_CHANGE=K274;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84520237_84520665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535580    GT:AD:DP:GQ:PL    0/1:27,24:51:99:700,0,823
16    84520325    rs431389    T    C    1090.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=30.29;SNPEFF_AMINO_ACID_CHANGE=G263;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84520237_84520665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535580    GT:AD:DP:GQ:PL    1/1:0,36:36:90.25:1123,90,0
16    84520396    rs422145    A    G    900.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=C240R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84520237_84520665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535580    GT:AD:DP:GQ:PL    1/1:0,28:28:75.22:934,75,0
16    84520450    rs148673734    G    C    439.40    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=41;Dels=0.0;FS=2.681;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;MQRankSum=-0.512;QD=10.72;ReadPosRankSum=-1.537;SNPEFF_AMINO_ACID_CHANGE=L222V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84520237_84520665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535580    GT:AD:DP:GQ:PL    0/1:23,18:41:99:469,0,738
16    84520537    rs431818    T    C    1385.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.92;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=I193V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84520237_84520665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535580    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1419,111,0
16    84520780    rs378384    G    C    170.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
16    84522666    rs417632    C    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    84522867    rs422918    C    A    759.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    1/1:0,24:24:57.19:792,57,0
16    84522897    rs436278    G    C    913.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=31.49;SNPEFF_AMINO_ACID_CHANGE=D145E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84522884_84523028;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535580    GT:AD:DP:GQ:PL    1/1:0,29:29:69.22:946,69,0
16    84523084    rs1864267    G    A    326.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.066;QD=14.85;ReadPosRankSum=-0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    0/1:11,11:22:99:357,0,334
16    84531307    rs442288    G    C    40.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:71,0,33
16    84531767    rs79169411    C    A    1510.37    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.693;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.0658;MQ=59.76;MQ0=0;MQRankSum=0.092;QD=15.57;ReadPosRankSum=2.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    0/1:51,46:97:99:1540,0,1672
16    84531780    rs501782    T    C    1045.71    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3305;MQ=59.69;MQ0=0;MQRankSum=-0.526;QD=13.94;ReadPosRankSum=-0.526;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1609;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343629    GT:AD:DP:GQ:PL    0/1:40,35:75:99:1076,0,1428
16    84623636    rs74418947    C    T    155.43    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.77;MQ0=0;MQRankSum=-0.219;QD=7.4;ReadPosRankSum=0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262428    GT:AD:DP:GQ:PL    0/1:13,7:21:99:185,0,424
16    84623989    rs2288584    T    C    157.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262428    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:190,15,0
16    84690289    rs35874869    G    GA    156.71    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=61.231;IndelType=I;MQ=57.94;MQ0=0;MQRankSum=0.762;QD=13.06;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258157    GT:AD:DP:GQ:PL    0/1:5,7:12:22.23:196,0,22
16    84695126    rs12924673    G    A    141.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.609;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.609;QD=7.88;ReadPosRankSum=0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258157    GT:AD:DP:GQ:PL    0/1:12,6:18:99:172,0,378
16    84695280    rs17755815    A    G    434.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.13;DB;DP=28;Dels=0.0;FS=8.916;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.364;QD=15.51;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=L401;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84695184_84695915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258157    GT:AD:DP:GQ:PL    0/1:14,14:28:99:464,0,421
16    84695490    rs12928590    C    T    188.30    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=14.48;ReadPosRankSum=0.66;SNPEFF_AMINO_ACID_CHANGE=H471;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84695184_84695915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258157    GT:AD:DP:GQ:PL    0/1:7,6:13:99:218,0,132
16    84767152    rs3764281    A    G    2819.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.767;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.701;MQ=59.71;MQ0=0;MQRankSum=-0.724;QD=35.69;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2853,174,0
16    84774022    rs12448489    G    A    2158.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2191,160,0
16    84774120    rs4510001    T    C    275.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:309,27,0
16    84778222    rs3751759    G    A    3335.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.575;MQ=59.08;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3335,244,0
16    84778762    rs4553618    C    T    2812.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.36;MQ0=0;QD=34.29;SNPEFF_AMINO_ACID_CHANGE=D225;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84778239_84779279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2845,211,0
16    84779248    rs7185949    T    G    2334.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.917;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.82;MQ0=0;MQRankSum=1.668;QD=28.13;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=V387;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84778239_84779279;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:2,81:83:99:2368,142,0
16    84792371    rs71386866    C    G    1334.53    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=109;Dels=0.0;FS=2.519;HRun=0;HaplotypeScore=4.7928;MQ=59.79;MQ0=0;MQRankSum=-1.432;QD=12.24;ReadPosRankSum=0.203;SNPEFF_AMINO_ACID_CHANGE=P414;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84792322_84792413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    0/1:53,55:109:99:1365,0,1607
16    84793261    rs3764333    A    G    570.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:604,45,0
16    84796603    rs12932018    A    G    2639.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.836;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8665;MQ=59.74;MQ0=0;MQRankSum=1.039;QD=30.34;ReadPosRankSum=0.346;SNPEFF_AMINO_ACID_CHANGE=Q521;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84796595_84796694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:1,85:87:99:2673,170,0
16    84796864    rs35594082    A    C    352.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:386,33,0
16    84798089    rs35307127    T    C    125.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
16    84802172    rs11149681    A    G    120.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
16    84808824    rs774298    C    G    4988.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1615;MQ=59.21;MQ0=0;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=L734;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84808766_84808831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000219473    GT:AD:DP:GQ:PL    1/1:0,145:146:99:4989,361,0
16    84872051    rs1546124    G    C    636.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-0.331;QD=12.01;ReadPosRankSum=0.539;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_84872028_84872341;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:28,24:52:99:666,0,790
16    84879286    rs12931881    G    A    361.20    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=19;Dels=0.0;FS=2.813;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.564;QD=19.01;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:7,12:19:99:391,0,198
16    84879324    rs12051168    T    C    382.96    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=32;Dels=0.0;FS=9.138;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=11.97;ReadPosRankSum=-0.982;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:17,15:32:99:413,0,506
16    84879464    rs12051468    A    G    738.61    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=47;Dels=0.0;FS=1.408;HRun=1;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=0.936;QD=15.72;ReadPosRankSum=-1.065;SNPEFF_AMINO_ACID_CHANGE=S105G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84879392_84879510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:20,27:47:99:769,0,629
16    84882911    rs4783086    T    C    371.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:405,33,0
16    84882974    rs4783087    C    A    741.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5769;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:0,24:24:57.19:774,57,0
16    84883102    rs8061351    C    T    754.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.45;MQ0=0;QD=35.94;SNPEFF_AMINO_ACID_CHANGE=P157;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84882991_84883123;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:0,21:21:63.16:788,63,0
16    84883195    rs141227639    A    ATTG    762.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=31.459;IndelType=I;MQ=51.77;MQ0=0;QD=63.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:1,11:12:36.12:805,36,0
16    84884072    rs4782673    T    G    674.72    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.825;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.888;QD=14.06;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:21,27:48:99:705,0,718
16    84884116    rs4783090    A    G    3078.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3112,241,0
16    84888541    rs2646127    T    C    155.04    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=58.63;MQ0=0;MQRankSum=0.146;QD=9.12;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:10,7:17:99:185,0,328
16    84888597    rs2646126    C    G    156.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=19.52;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:3,5:8:99:186,0,101
16    84900472    rs72799566    T    C    470.49    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.693;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=59.36;MQ0=0;MQRankSum=-0.158;QD=13.07;ReadPosRankSum=0.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:17,19:36:99:500,0,539
16    84900752    rs774192    G    A    200.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
16    84902549    rs796487    A    G    134.13    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.833;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.84;MQ0=0;MQRankSum=-0.658;QD=6.71;ReadPosRankSum=-0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:14,6:20:99:164,0,402
16    84906098    rs721005    C    G    713.97    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.945;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=13.73;ReadPosRankSum=-0.854;SNPEFF_AMINO_ACID_CHANGE=T322S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84906048_84906114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:24,28:52:99:744,0,673
16    84906820    rs2934490    T    C    364.39    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.574;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.465;QD=14.02;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:12,14:26:99:394,0,297
16    84906909    rs2934489    G    C    100.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=9.11;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:6,5:11:99:130,0,220
16    84907450    rs2968143    G    A    391.61    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.354;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=55.86;MQ0=0;MQRankSum=-1.102;QD=17.03;ReadPosRankSum=0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:9,14:23:99:422,0,296
16    84907499    rs11298434    GTT    G    103.69    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=0.997;DB;DP=51;FS=0.0;HRun=20;HaplotypeScore=428.4186;IndelType=D;MQ=45.35;MQ0=0;MQRankSum=-0.892;QD=2.03;ReadPosRankSum=1.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:26,13:51:99:143,0,419
16    84907670    rs2934486    G    C    1061.87    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.414;DB;DP=69;Dels=0.0;FS=1.421;HRun=1;HaplotypeScore=1.4942;MQ=54.77;MQ0=0;MQRankSum=-0.174;QD=15.39;ReadPosRankSum=1.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1092,0,855
16    84907842    rs2934485    G    A    35.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.9;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:66,0,33
16    84910897    rs2646122    G    A    108.44    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=7.75;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:9,5:14:99:138,0,302
16    84910912    rs2641662    G    C    582.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:616,45,0
16    84911195    rs2244486    G    C    124.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.674;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.061;QD=8.33;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:10,5:15:99:155,0,363
16    84922859    rs767050    C    T    867.51    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.254;DB;DP=59;Dels=0.0;FS=2.277;HRun=0;HaplotypeScore=1.9997;MQ=60.0;MQ0=0;MQRankSum=-0.584;QD=14.7;ReadPosRankSum=-0.903;SNPEFF_AMINO_ACID_CHANGE=A443;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_84922836_84922969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:28,31:59:99:898,0,736
16    84940016    rs2646107    C    G    121.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
16    84940062    rs1874621    A    C    164.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=18.25;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    0/1:3,6:9:97.04:194,0,97
16    84940479    rs1874008    T    C    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRISPLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262424    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
16    85009970    rs7195377    A    G    860.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.084;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=59.72;MQ0=0;MQRankSum=0.153;QD=10.5;ReadPosRankSum=0.331;SNPEFF_AMINO_ACID_CHANGE=G302;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_85007787_85010125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313732    GT:AD:DP:GQ:PL    0/1:45,36:81:99:891,0,1313
16    85011480    rs8045409    T    C    2150.11    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=1.191;DB;DP=149;Dels=0.0;FS=1.415;HRun=2;HaplotypeScore=1.811;MQ=59.69;MQ0=0;MQRankSum=-1.424;QD=14.43;ReadPosRankSum=0.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313732    GT:AD:DP:GQ:PL    0/1:74,75:149:99:2180,0,2363
16    85011622    rs8044638    G    A    1159.69    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.361;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.49;MQ0=0;MQRankSum=-0.544;QD=12.74;ReadPosRankSum=-2.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313732    GT:AD:DP:GQ:PL    0/1:46,45:91:99:1190,0,1548
16    85015671    rs56033302    G    C    155.18    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=22;Dels=0.0;FS=3.882;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=7.05;ReadPosRankSum=-1.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313732    GT:AD:DP:GQ:PL    0/1:13,9:22:99:185,0,469
16    85023855    rs931713    C    T    422.89    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.336;QD=18.39;ReadPosRankSum=-1.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313732    GT:AD:DP:GQ:PL    0/1:9,14:23:99:453,0,261
16    85111943    rs12932076    A    G    137.08    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0513;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258180    GT:AD:DP:GQ:PL    0/1:1,5:6:23.71:167,0,24
16    85112002    rs2291967    T    G    267.01    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=20.54;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0513;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258180    GT:AD:DP:GQ:PL    0/1:3,10:13:91.06:297,0,91
16    85112097    rs12932461    C    G    285.25    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=1.004;DB;DP=14;Dels=0.0;FS=4.027;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.456;QD=20.38;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0513;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258180    GT:AD:DP:GQ:PL    0/1:2,12:14:37.17:315,0,37
16    85120609    rs2291962    A    G    166.09    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.849;DB;DP=19;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=8.74;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0513;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258180    GT:AD:DP:GQ:PL    0/1:11,8:19:99:196,0,384
16    85135968    rs35852446    G    A    470.14    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.55;DB;DP=31;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=15.17;ReadPosRankSum=0.889;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM92B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393246    GT:AD:DP:GQ:PL    0/1:16,15:31:99:500,0,492
16    85141823    rs7184421    T    C    101.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM92B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393246    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
16    85145800    rs60296580    C    G    78.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=15.69;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM92B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393246    GT:AD:DP:GQ:PL    0/1:2,3:5:51.82:108,0,52
16    85145977    rs9931038    T    C    146.19    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.51;DB;DP=19;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.489;QD=7.69;ReadPosRankSum=0.044;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_85145939_85146114;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM92B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393246    GT:AD:DP:GQ:PL    0/1:11,8:19:99:176,0,345
16    85682071    rs34108640    G    C    247.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=30;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=1.9142;MQ=53.52;MQ0=0;MQRankSum=-2.096;QD=8.24;ReadPosRankSum=-0.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253458    GT:AD:DP:GQ:PL    0/1:18,12:30:99:277,0,555
16    85682471    rs67659612    C    T    53.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.63;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253458    GT:AD:DP:GQ:PL    0/1:3,4:7:83.41:83,0,91
16    85689842    rs35004989    A    G    320.81    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.06;DB;DP=21;Dels=0.0;FS=2.128;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=15.28;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411612    GT:AD:DP:GQ:PL    0/1:8,13:21:99:351,0,198
16    85690878    rs71388003    C    CA    569.35    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.775;DB;DP=33;FS=0.0;HRun=1;HaplotypeScore=85.3281;IndelType=I;MQ=60.33;MQ0=0;MQRankSum=-0.415;QD=17.25;ReadPosRankSum=-1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411612    GT:AD:DP:GQ:PL    0/1:17,16:33:99:608,0,484
16    85691294    rs7404958    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411612    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    85701572    rs11268657    A    ACGCTGGGTC    819.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=115.6469;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=-2.637;QD=68.26;ReadPosRankSum=1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479488    GT:AD:DP:GQ:PL    0/1:6,6:12:99:858,0,433
16    85701586    rs4843481    C    T    226.05    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.641;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.49;MQ0=0;MQRankSum=-2.289;QD=10.76;ReadPosRankSum=-0.458;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479488    GT:AD:DP:GQ:PL    0/1:10,11:21:99:256,0,338
16    85706047    rs9940601    A    C    667    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.01;DB;DP=37;Dels=0.0;FS=7.203;HRun=0;HaplotypeScore=1.581;MQ=59.38;MQ0=0;MQRankSum=0.017;QD=18.03;ReadPosRankSum=0.554;SNPEFF_AMINO_ACID_CHANGE=R1082;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_85706011_85706960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405402    GT:AD:DP:GQ:PL    0/1:12,24:37:99:697,0,366
16    85712105    rs3815795    C    T    760.56    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=1.479;DB;DP=68;Dels=0.0;FS=2.072;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.429;QD=11.18;ReadPosRankSum=1.015;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0182;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253458    GT:AD:DP:GQ:PL    0/1:41,27:68:99:791,0,1154
16    85715440    rs4843506    T    A    41.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.23;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GINS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253462    GT:AD:DP:GQ:PL    0/1:2,3:5:65.53:71,0,66
16    85720955    rs3815797    G    A    260.33    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.847;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.188;QD=9.3;ReadPosRankSum=-0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GINS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253462    GT:AD:DP:GQ:PL    0/1:17,11:28:99:290,0,624
16    85721297    rs9930592    T    A    288.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GINS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253462    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:321,27,0
16    85768717    rs1862733    C    T    108.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=10.85;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284245    GT:AD:DP:GQ:PL    0/1:4,6:10:99:138,0,140
16    85769034    rs410639    A    C    41.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    85775064    rs388855    A    G    34.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
16    85775175    rs446444    G    A    216.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284245    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
16    85813231    rs8587    A    C    423.03    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.931;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.842;QD=13.22;ReadPosRankSum=0.133;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4NB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253457    GT:AD:DP:GQ:PL    0/1:14,18:32:99:453,0,497
16    85813526    rs301163    G    A    113.46    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=15;Dels=0.0;FS=2.059;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=7.56;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4NB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253457    GT:AD:DP:GQ:PL    0/1:9,6:15:99:143,0,282
16    85813880    rs301164    T    C    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.86;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4NB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253457    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,110
16    85813963    rs301165    C    T    590.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4NB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253457    GT:AD:DP:GQ:PL    1/1:0,20:20:51.13:624,51,0
16    85814899    rs3081701    T    TAGTC    1724.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=71.6948;IndelType=I;MQ=56.3;MQ0=0;QD=74.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4NB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253457    GT:AD:DP:GQ:PL    1/1:2,20:23:66.23:1767,66,0
16    85814995    rs301166    A    G    157.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=31.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4NB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253457    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:190,15,0
16    85838503    rs2599090    T    C    588.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253452    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:622,48,0
16    85838532    rs2733965    A    G    770.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253452    GT:AD:DP:GQ:PL    1/1:0,23:23:60.17:803,60,0
16    85838653    rs2599091    T    C    1396.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=L62;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_85838543_85838710;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4I1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253452    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1430,108,0
16    85838804    rs11419687    G    GA    438.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=18.1338;IndelType=I;MQ=60.0;MQ0=0;QD=43.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253452    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:480,30,0
16    85838916    rs2075531    A    G    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253452    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
16    85839186    rs2733966    C    T    208.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253452    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
16    85839211    rs2075532    G    C    249.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253452    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
16    85839543    rs2641797    C    G    546.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX4I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253452    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:580,45,0
16    85942420    rs16939917    T    A    70.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.727;QD=17.65;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268638    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:101,0,29
16    85942496    rs305079    T    C    248.35    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.0;QD=17.74;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268638    GT:AD:DP:GQ:PL    0/1:6,8:14:99:278,0,206
16    85945076    rs2292980    T    C    199.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=28.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268638    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:233,18,0
16    85945231    rs8052064    C    T    372.76    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.785;DB;DP=23;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.444;QD=16.21;ReadPosRankSum=-0.034;SNPEFF_AMINO_ACID_CHANGE=C138;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_85945176_85945264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268638    GT:AD:DP:GQ:PL    0/1:8,15:23:99:403,0,216
16    85946481    rs11649318    G    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268638    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    85946494    rs11863590    A    G    37.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268638    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:69,6,0
16    85951738    rs9924484    C    G    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268638    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
16    85951796    rs8064189    T    G    124.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268638    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
16    86369170    rs9937792    G    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304488    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
16    86369260    rs72813299    C    T    175.71    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.4;QD=12.55;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304488    GT:AD:DP:GQ:PL    0/1:5,9:14:99:206,0,127
16    86369298    rs12448286    G    A    205.48    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6297;MQ=58.45;MQ0=0;MQRankSum=0.209;QD=13.7;ReadPosRankSum=0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304488    GT:AD:DP:GQ:PL    0/1:7,8:15:99:235,0,194
16    86369306    rs3828516    C    A    181.65    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=15;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=1.7356;MQ=58.45;MQ0=0;MQRankSum=-0.058;QD=12.11;ReadPosRankSum=-0.752;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304488    GT:AD:DP:GQ:PL    0/1:8,7:15:99:212,0,195
16    86369368    rs2581295    G    A    226.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=15.09;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304488    GT:AD:DP:GQ:PL    0/1:5,10:15:99:256,0,133
16    86371037    rs61744045    G    A    77.21    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=2.817;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=5.94;ReadPosRankSum=0.811;SNPEFF_AMINO_ACID_CHANGE=A62V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_86370967_86371198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092327.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304488    GT:AD:DP:GQ:PL    0/1:7,6:13:99:107,0,190
16    86371181    .    G    A    448.12    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.846;DP=20;Dels=0.0;FS=13.778;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.701;QD=22.41;ReadPosRankSum=-1.608;SNPEFF_AMINO_ACID_CHANGE=S14L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_86370967_86371198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092327.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304488    GT:AD:DP:GQ:PL    0/1:6,14:20:99:478,0,146
16    86371461    rs62051157    G    A    43.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.99;ReadPosRankSum=0.727;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_86371288_86372267;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092327.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304488    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:74,0,33
16    86544047    rs77626209    C    A    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262426    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
16    86546789    rs80321560    A    G    65.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=7.33;ReadPosRankSum=-0.248;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262426    GT:AD:DP:GQ:PL    0/1:6,3:9:95.96:96,0,223
16    86565486    rs3829536    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322911    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    86565537    rs56017283    C    G    36.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322911    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:67,0,36
16    86565826    rs3751803    C    G    206.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.46;SNPEFF_AMINO_ACID_CHANGE=G152R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_86564439_86566087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546093    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:239,21,0
16    86565882    rs3751802    G    C    59.46    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.95;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=S133C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_86564439_86566087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546093    GT:AD:DP:GQ:PL    0/1:7,3:10:89.46:89,0,223
16    86566039    rs3751801    C    T    66.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.52;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=A242T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_86563782_86566087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543303    GT:AD:DP:GQ:PL    0/1:1,3:4:27.29:96,0,27
16    86566042    rs3751800    G    A    78.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.74;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=R241C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_86563782_86566087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543303    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:109,0,30
16    86575460    rs3213418    C    G    814.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322911    GT:AD:DP:GQ:PL    1/1:0,28:28:63.20:847,63,0
16    86575737    rs3829533    C    T    461.37    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.737;DB;DP=44;Dels=0.0;FS=2.714;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=10.49;ReadPosRankSum=-0.134;SNPEFF_AMINO_ACID_CHANGE=T12;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_86575707_86575819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546093    GT:AD:DP:GQ:PL    0/1:21,23:44:99:491,0,636
16    86585905    rs8046613    C    A    147.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTHFSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322911    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
16    87349333    rs6540037    A    G    724.87    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=4.107;DB;DP=48;Dels=0.0;FS=1.454;HRun=3;HaplotypeScore=1.5983;MQ=59.52;MQ0=0;MQRankSum=-1.955;QD=15.1;ReadPosRankSum=-0.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253461    GT:AD:DP:GQ:PL    0/1:22,26:48:99:755,0,663
16    87349489    rs7193801    A    G    582.26    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=43;Dels=0.0;FS=1.77;HRun=1;HaplotypeScore=3.4931;MQ=58.92;MQ0=0;MQRankSum=0.668;QD=13.54;ReadPosRankSum=0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253461    GT:AD:DP:GQ:PL    0/1:22,21:43:99:612,0,614
16    87349529    rs7198660    T    C    331.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.03;MQ0=0;MQRankSum=1.819;QD=13.82;ReadPosRankSum=-1.761;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253461    GT:AD:DP:GQ:PL    0/1:12,12:24:99:362,0,412
16    87349541    rs147122963    C    T    306.33    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.274;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.303;QD=13.92;ReadPosRankSum=1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253461    GT:AD:DP:GQ:PL    0/1:10,12:22:99:336,0,284
16    87350773    rs3748393    C    A    174.54    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=50.96;MQ0=0;MQRankSum=0.365;QD=15.87;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=A26S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_87350697_87351022;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf95;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253461    GT:AD:DP:GQ:PL    0/1:4,7:11:91.12:205,0,91
16    87350997    rs4843592    A    G    40.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=1.026;QD=10.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_16_87350697_87351022;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf95;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253461    GT:AD:DP:GQ:PL    0/1:2,2:4:54.83:71,0,55
16    87376605    rs2303763    C    T    276.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311635    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:310,24,0
16    87376623    rs62936960    C    G    209.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311635    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:242,18,0
16    87377455    rs2303764    G    C    459.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311635    GT:AD:DP:GQ:PL    1/1:0,16:16:42.10:493,42,0
16    87417621    rs2318450    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311635    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
16    87426028    rs8043569    T    C    145.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1LC3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534986    GT:AD:DP:GQ:PL    1/1:0,8:8:15.03:178,15,0
16    87436382    rs8044820    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    87436720    rs1054521    G    T    1662.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.21;MQ0=0;QD=32.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1696,126,0
16    87436734    .    G    T    58.02    QDFilter2    AB=0.891;AC=1;AF=0.50;AN=2;BaseQRankSum=3.01;DP=55;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.49;MQ0=0;MQRankSum=-2.443;QD=1.05;ReadPosRankSum=3.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    0/1:49,6:55:88.01:88,0,1465
16    87436764    rs1054528    A    G    1041.62    PASS    AB=0.146;AC=1;AF=0.50;AN=2;BaseQRankSum=1.088;DB;DP=41;Dels=0.0;FS=2.466;HRun=3;HaplotypeScore=0.0;MQ=52.21;MQ0=0;MQRankSum=2.453;QD=25.41;ReadPosRankSum=1.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    0/1:6,35:41:99:1072,0,132
16    87443734    rs1050847    C    T    415.83    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=15.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    0/1:11,15:26:99:446,0,370
16    87445839    rs3748400    C    T    1793.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.6;MQ0=0;QD=35.88;SNPEFF_AMINO_ACID_CHANGE=V693M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_87445122_87446582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1827,135,0
16    87446053    rs2042395    G    A    1911.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_AMINO_ACID_CHANGE=A621;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_87445122_87446582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1945,144,0
16    87447903    rs7206322    C    T    3937.41    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DB;DP=130;Dels=0.0;FS=4.107;HRun=0;HaplotypeScore=0.9933;MQ=54.74;MQ0=0;MQRankSum=2.371;QD=30.29;ReadPosRankSum=1.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    1/1:2,128:130:99:3937,279,0
16    87452546    rs4240794    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268616    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
16    87677654    rs56119180    G    A    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284262    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
16    87677693    rs918366    G    A    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284262    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
16    87677763    rs76960347    G    A    60.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.75;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284262    GT:AD:DP:GQ:PL    0/1:6,3:9:90.72:91,0,221
16    87677791    rs918367    A    C    172.30    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=13.25;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284262    GT:AD:DP:GQ:PL    0/1:6,7:13:99:202,0,192
16    87678144    rs918368    T    C    699.96    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.134;DB;DP=54;Dels=0.0;FS=1.07;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.007;QD=12.96;ReadPosRankSum=-0.686;SNPEFF_AMINO_ACID_CHANGE=S221;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_87677864_87678641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284262    GT:AD:DP:GQ:PL    0/1:28,26:54:99:730,0,800
16    87678441    rs8051448    C    T    421.92    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.074;DB;DP=29;Dels=0.0;FS=3.473;HRun=0;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;MQRankSum=0.197;QD=14.55;ReadPosRankSum=0.855;SNPEFF_AMINO_ACID_CHANGE=R183;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_87677864_87678641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537256    GT:AD:DP:GQ:PL    0/1:13,16:29:99:452,0,326
16    87742092    rs2290018    G    A    551.17    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=42;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=0.8667;MQ=57.2;MQ0=0;MQRankSum=0.315;QD=13.12;ReadPosRankSum=-0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270583    GT:AD:DP:GQ:PL    0/1:22,20:42:99:581,0,548
16    87760239    .    G    C    48.72    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270583    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
16    87760337    rs67926154    A    C    352.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=23.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270583    GT:AD:DP:GQ:PL    1/1:0,15:15:30.10:385,30,0
16    87788756    rs2303770    A    G    338.57    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.571;DB;DP=21;Dels=0.0;FS=2.75;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.34;QD=16.12;ReadPosRankSum=-1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270583    GT:AD:DP:GQ:PL    0/1:8,13:21:99:369,0,260
16    87795764    rs117661455    T    C    144.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=16.03;ReadPosRankSum=-2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270583    GT:AD:DP:GQ:PL    0/1:3,6:9:99:174,0,104
16    87903082    rs3829509    G    C    92.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=23.09;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_16_87902491_87903125;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261622    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:125,12,0
16    87921607    rs61607056    C    T    276.49    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.333;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=-0.847;QD=7.9;ReadPosRankSum=-0.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:23,12:35:99:306,0,828
16    87921654    rs58800453    G    A    993.58    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.674;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6466;MQ=57.6;MQ0=0;MQRankSum=-0.543;QD=15.29;ReadPosRankSum=-0.502;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:32,33:65:99:1024,0,995
16    87921846    rs72816311    T    A    1768.47    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=3.483;DB;DP=103;Dels=0.0;FS=0.785;HRun=0;HaplotypeScore=0.8667;MQ=55.7;MQ0=0;MQRankSum=-1.45;QD=17.17;ReadPosRankSum=-1.103;SNPEFF_AMINO_ACID_CHANGE=A269;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_87921625_87921878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:44,59:103:99:1798,0,1332
16    87921935    rs60779524    T    C    804.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.624;DB;DP=45;Dels=0.0;FS=3.78;HRun=1;HaplotypeScore=0.9789;MQ=53.64;MQ0=0;MQRankSum=-1.384;QD=17.88;ReadPosRankSum=-0.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:15,30:45:99:835,0,415
16    87922036    rs8056952    A    G    100.88    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=-0.365;QD=10.09;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:6,4:10:99:131,0,214
16    87925260    rs11859896    T    C    78.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.13;MQ0=0;MQRankSum=0.727;QD=19.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:1,3:4:9.65:108,0,10
16    87925279    rs11859898    T    G    111.44    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.57;MQ0=0;MQRankSum=0.731;QD=22.29;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:1,4:5:18.39:141,0,18
16    87935958    rs11438148    C    CA    142.98    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=20;FS=3.274;HRun=12;HaplotypeScore=64.2844;IndelType=I;MQ=50.37;MQ0=1;MQRankSum=0.433;QD=6.81;ReadPosRankSum=-0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:12,9:20:99:182,0,146
16    87938308    rs116928297    C    T    723.12    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.584;DB;DP=52;Dels=0.0;FS=1.438;HRun=0;HaplotypeScore=0.8941;MQ=58.5;MQ0=0;MQRankSum=-1.584;QD=13.91;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:22,30:52:99:753,0,695
16    87938398    rs7186698    G    A    2026.89    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=5.274;DB;DP=154;Dels=0.0;FS=3.251;HRun=0;HaplotypeScore=4.5215;MQ=57.17;MQ0=0;MQRankSum=1.122;QD=13.16;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=P151;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_87938392_87938510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:78,75:154:99:2057,0,2122
16    87938699    rs7193111    C    A    161.56    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.22;MQ0=1;MQRankSum=1.684;QD=8.98;ReadPosRankSum=-1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:10,8:18:99:192,0,212
16    87938700    rs8051832    C    G    217.90    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.22;MQ0=1;MQRankSum=-1.78;QD=12.11;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:8,10:18:99:248,0,249
16    87938783    rs35306202    G    A    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,70
16    87960560    rs12922226    A    T    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309893    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:73,0,26
16    88039979    rs8055024    G    C    64.32    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=16.08;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436970    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:94,0,29
16    88052161    rs7499814    C    A    592.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.04;SNPEFF_AMINO_ACID_CHANGE=L218;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88052034_88052273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289484    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:626,48,0
16    88060989    rs8045732    G    C    1243.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286122    GT:AD:DP:GQ:PL    1/1:0,33:33:96.31:1277,96,0
16    88066655    rs11641367    A    G    301.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.858;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=53.75;MQ0=0;MQRankSum=-3.56;QD=8.36;ReadPosRankSum=0.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286122    GT:AD:DP:GQ:PL    0/1:20,16:36:99:331,0,553
16    88066659    rs11646301    C    A    369.55    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=35;Dels=0.0;FS=1.459;HRun=1;HaplotypeScore=1.8319;MQ=53.56;MQ0=0;MQRankSum=-4.354;QD=10.56;ReadPosRankSum=-0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286122    GT:AD:DP:GQ:PL    0/1:19,16:35:99:400,0,566
16    88066717    rs74992447    C    T    727.58    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.928;DB;DP=52;Dels=0.0;FS=2.418;HRun=0;HaplotypeScore=0.0;MQ=55.89;MQ0=0;MQRankSum=3.254;QD=13.99;ReadPosRankSum=0.088;SNPEFF_AMINO_ACID_CHANGE=P313S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88066715_88066851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289484    GT:AD:DP:GQ:PL    0/1:22,30:52:99:758,0,588
16    88105053    rs11117358    T    A    72.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=12.13;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=Y19N;SNPEFF_CODON_CHANGE=Tac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88104679_88105535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537202    GT:AD:DP:GQ:PL    0/1:3,3:6:56.19:103,0,56
16    88105725    rs8050209    G    A    152.30    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=19.04;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=A196;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88105675_88105818;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537202    GT:AD:DP:GQ:PL    0/1:2,6:8:17.19:182,0,17
16    88105966    rs11864872    A    G    82.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.54;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286122    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:112,0,29
16    88123327    rs6540168    A    C    211.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537202    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
16    88123598    rs8063486    C    G    524.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=R200T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88121647_88124848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134312.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378417    GT:AD:DP:GQ:PL    1/1:0,16:16:45.10:557,45,0
16    88123697    rs8063654    C    A    456.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.87;SNPEFF_AMINO_ACID_CHANGE=G167V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88121647_88124848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134312.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378417    GT:AD:DP:GQ:PL    1/1:0,17:17:36.12:490,36,0
16    88555301    rs34251187    C    A    216.77    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=19.71;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319555    GT:AD:DP:GQ:PL    0/1:3,8:11:79.59:247,0,80
16    88600079    rs13335396    C    G    175.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=25.05;SNPEFF_AMINO_ACID_CHANGE=P571;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88599556_88601389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFPM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319555    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:208,18,0
16    88620037    rs11647496    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378416    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
16    88620148    rs11647546    C    G    423.90    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.25;MQ0=0;MQRankSum=1.076;QD=24.94;ReadPosRankSum=2.287;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378416    GT:AD:DP:GQ:PL    0/1:3,14:17:27.61:454,0,28
16    88620195    rs2879897    T    G    916.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=32.73;SNPEFF_AMINO_ACID_CHANGE=E145D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88620112_88620470;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378416    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:949,75,0
16    88620312    rs2340955    T    C    234.01    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=26;Dels=0.0;FS=3.682;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.137;QD=9.0;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=A106;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88620112_88620470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf85;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378416    GT:AD:DP:GQ:PL    0/1:16,10:26:99:264,0,541
16    88620628    rs899739    A    G    76.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378416    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
16    88620693    rs883489    C    A    34.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=11.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378416    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:64,0,30
16    88643457    rs936621    A    G    587.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:620,48,0
16    88644005    rs899728    A    G    915.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=K158;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88643518_88644134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,29:29:78.22:949,78,0
16    88666035    rs6500481    G    A    651.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:684,54,0
16    88666048    rs62050304    G    A    367.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.664;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.664;QD=15.31;ReadPosRankSum=1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    0/1:12,12:24:99:397,0,404
16    88666553    rs3751678    C    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
16    88675194    rs9932692    A    G    667.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,20:20:60.16:701,60,0
16    88675529    rs9930974    C    T    531.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:565,42,0
16    88688435    rs1111434    G    T    69.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:102,9,0
16    88688547    rs1111433    T    C    565.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:599,45,0
16    88688832    rs3751675    A    G    169.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:202,15,0
16    88690882    rs3830228    G    GAGC    366.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=34.9335;IndelType=I;MQ=40.36;MQ0=0;QD=52.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:408,18,0
16    88695332    rs4782306    G    C    468.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:501,39,0
16    88697412    rs117311218    G    A    312.91    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=21;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.9832;MQ=57.77;MQ0=0;MQRankSum=0.228;QD=14.9;ReadPosRankSum=1.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289509    GT:AD:DP:GQ:PL    0/1:9,11:21:99:343,0,234
16    88705804    rs2254073    T    C    37.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYBA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261623    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
16    88706330    rs11076688    C    T    66.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.07;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=S148;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88706222_88706884;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244241    GT:AD:DP:GQ:PL    0/1:3,3:6:87.42:96,0,87
16    88713236    rs4673    A    G    301.19    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.655;DB;DP=27;Dels=0.0;FS=6.455;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=11.16;ReadPosRankSum=1.529;SNPEFF_AMINO_ACID_CHANGE=Y72H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88713163_88713246;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYBA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261623    GT:AD:DP:GQ:PL    0/1:14,13:27:99:331,0,432
16    88713473    rs4782308    G    A    136.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.588;DB;DP=12;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-0.467;QD=11.34;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301012    GT:AD:DP:GQ:PL    0/1:6,6:12:99:166,0,153
16    88713501    rs4782393    A    G    161.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=14;Dels=0.0;FS=3.282;HRun=2;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.831;QD=11.51;ReadPosRankSum=-1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301012    GT:AD:DP:GQ:PL    0/1:7,7:14:99:191,0,150
16    88714559    rs2306422    C    T    75.59    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.9;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301012    GT:AD:DP:GQ:PL    0/1:1,3:4:22.32:106,0,22
16    88717386    rs8053867    T    C    174.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.85;SNPEFF_AMINO_ACID_CHANGE=E12;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88717364_88717457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYBA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261623    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:208,15,0
16    88719877    rs12926212    C    G    33.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=4.23;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301012    GT:AD:DP:GQ:PL    0/1:5,3:8:63.82:64,0,149
16    88721012    rs12935454    G    A    247.96    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.224;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=14.59;ReadPosRankSum=1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301012    GT:AD:DP:GQ:PL    0/1:9,8:17:99:278,0,248
16    88722946    rs28501323    C    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301012    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
16    88724275    rs56812649    A    T    352.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.391;DB;DP=27;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.854;QD=13.04;ReadPosRankSum=1.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301012    GT:AD:DP:GQ:PL    0/1:15,12:27:99:382,0,513
16    88724347    rs2279258    G    T    858.73    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.922;DB;DP=67;Dels=0.0;FS=7.854;HRun=0;HaplotypeScore=1.8991;MQ=59.66;MQ0=0;MQRankSum=0.256;QD=12.82;ReadPosRankSum=0.637;SNPEFF_AMINO_ACID_CHANGE=R78;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88724323_88724437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MVD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301012    GT:AD:DP:GQ:PL    0/1:33,34:67:99:889,0,792
16    88747894    rs140441889    A    G    443.77    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=0.215;DB;DP=37;Dels=0.0;FS=8.984;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.215;QD=11.99;ReadPosRankSum=0.348;SNPEFF_AMINO_ACID_CHANGE=I102T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88747502_88748122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAI3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332281    GT:AD:DP:GQ:PL    0/1:20,17:37:99:474,0,542
16    88767769    rs2306049    G    C    509.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=27;Dels=0.0;FS=6.965;HRun=0;HaplotypeScore=0.734;MQ=57.39;MQ0=0;MQRankSum=-1.569;QD=18.85;ReadPosRankSum=-0.746;SNPEFF_AMINO_ACID_CHANGE=L71;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88767670_88767826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF166;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312838    GT:AD:DP:GQ:PL    0/1:9,18:27:99:539,0,281
16    88767861    rs2306048    C    G    76.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;MQRankSum=-0.715;QD=6.39;ReadPosRankSum=-1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312838    GT:AD:DP:GQ:PL    0/1:3,9:12:99:107,0,101
16    88773396    rs2340973    G    A    141.70    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=20.24;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:2,5:7:62.22:172,0,62
16    88773528    rs11641194    C    A    320.93    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.284;QD=8.91;ReadPosRankSum=1.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:23,13:36:99:351,0,592
16    88776141    rs4598894    G    A    42.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:72,0,20
16    88776148    rs4377140    C    T    34.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.71;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:3,3:6:64.27:64,0,102
16    88776297    rs4390574    T    C    744.95    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=58.5;MQ0=0;MQRankSum=1.007;QD=13.3;ReadPosRankSum=0.238;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:27,29:56:99:775,0,781
16    88776499    rs61744010    G    T    703.75    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.876;DB;DP=43;Dels=0.0;FS=1.464;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.718;QD=16.37;ReadPosRankSum=0.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:21,22:43:99:734,0,672
16    88777995    rs11076704    C    T    231.05    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.214;DB;DP=28;Dels=0.0;FS=2.41;HRun=1;HaplotypeScore=0.9332;MQ=59.17;MQ0=0;MQRankSum=-0.295;QD=8.25;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:19,9:28:99:261,0,649
16    88778133    rs2879902    C    A    397.98    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.31;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=59.36;MQ0=0;MQRankSum=-0.346;QD=11.06;ReadPosRankSum=-1.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:21,15:36:99:428,0,579
16    88778615    rs7205989    G    A    202.96    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=7.368;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.58;QD=20.3;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:3,7:10:91.68:233,0,92
16    88778831    rs7201610    C    T    70.23    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=8;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.78;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,146
16    88779952    rs74757912    C    CCT    491.16    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=25;FS=6.779;HRun=0;HaplotypeScore=93.7629;IndelType=I;MQ=59.33;MQ0=0;MQRankSum=-0.63;QD=19.65;ReadPosRankSum=-1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:14,11:25:99:530,0,527
16    88780023    rs1317756    G    A    515.93    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.122;DB;DP=42;Dels=0.0;FS=6.069;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.639;QD=12.28;ReadPosRankSum=-0.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:23,19:42:99:546,0,689
16    88780472    rs7205626    T    C    244.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.031;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.706;QD=13.57;ReadPosRankSum=-0.795;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:9,9:18:99:274,0,244
16    88780518    rs3826076    A    G    337.33    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.826;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.25;MQ0=0;MQRankSum=-0.059;QD=10.88;ReadPosRankSum=0.178;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:16,15:31:99:367,0,509
16    88780634    rs11278302    AGGTGTG    A    673.86    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=4.269;DB;DP=36;FS=1.468;HRun=0;HaplotypeScore=239.5666;IndelType=D;MQ=55.44;MQ0=0;MQRankSum=-1.8;QD=18.72;ReadPosRankSum=-0.042;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_16_88780544_88780635;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:23,13:36:99:713,0,1500
16    88780685    rs7191439    C    T    205.77    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.411;DB;DP=29;Dels=0.0;FS=2.08;HRun=0;HaplotypeScore=0.9967;MQ=54.17;MQ0=0;MQRankSum=-3.246;QD=7.1;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:18,11:29:99:236,0,582
16    88780923    rs8050715    C    G    407.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=36;Dels=0.0;FS=1.377;HRun=4;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.347;QD=11.31;ReadPosRankSum=-0.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:18,18:36:99:437,0,508
16    88781125    rs8043637    T    C    189.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.191;DB;DP=25;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.248;QD=7.57;ReadPosRankSum=-0.86;SNPEFF_AMINO_ACID_CHANGE=C357;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88780995_88781145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378384    GT:AD:DP:GQ:PL    0/1:15,10:25:99:219,0,523
16    88781419    rs2306046    A    G    221.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.473;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8273;MQ=60.0;MQ0=0;MQRankSum=-0.473;QD=13.84;ReadPosRankSum=-1.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:8,8:16:99:251,0,255
16    88781614    rs1058158    G    C    294.90    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=15.52;ReadPosRankSum=1.528;SNPEFF_AMINO_ACID_CHANGE=G482R;SNPEFF_CODON_CHANGE=Gga/Cga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88781590_88781784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:5,14:19:99:325,0,157
16    88783374    rs8044367    A    G    50.85    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.26;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:2,5:7:56.54:81,0,57
16    88783521    rs6500491    T    C    947.13    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.428;DB;DP=62;Dels=0.0;FS=2.683;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.496;QD=15.28;ReadPosRankSum=0.969;SNPEFF_AMINO_ACID_CHANGE=P2190;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88783431_88783619;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:27,35:62:99:977,0,799
16    88783738    rs4782432    A    G    136.17    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=11.35;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312060    GT:AD:DP:GQ:PL    0/1:7,5:12:99:166,0,256
16    88786967    rs4401037    C    T    72.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.29;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475586    GT:AD:DP:GQ:PL    0/1:4,3:7:99:102,0,137
16    88787607    rs150376294    CCTT    C    292.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.356;DB;DP=20;FS=4.415;HRun=0;HaplotypeScore=88.381;IndelType=D;MQ=58.22;MQ0=0;MQRankSum=-0.579;QD=14.65;ReadPosRankSum=0.27;SNPEFF_AMINO_ACID_CHANGE=K1878-;SNPEFF_CODON_CHANGE=aag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_16_88787574_88787838;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:12,8:20:99:332,0,743
16    88787673    rs35159887    G    A    170.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=11.181;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=17.05;ReadPosRankSum=1.133;SNPEFF_AMINO_ACID_CHANGE=P1857S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88787574_88787838;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:4,6:10:99:201,0,132
16    88787704    rs8043924    G    C    113.25    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=16.18;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=A1846;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88787574_88787838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:2,5:7:59.57:143,0,60
16    88792047    rs4782430    A    G    489.42    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=2.189;DB;DP=40;Dels=0.0;FS=1.252;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.274;QD=12.24;ReadPosRankSum=0.438;SNPEFF_AMINO_ACID_CHANGE=F1338;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88792003_88792092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:17,23:40:99:519,0,561
16    88792097    rs4782429    A    G    542.30    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=2.913;DB;DP=34;Dels=0.0;FS=8.562;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=15.95;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491917    GT:AD:DP:GQ:PL    0/1:15,19:34:99:572,0,439
16    88802473    rs76354120    C    T    38.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:68,0,34
16    88803557    rs9936610    G    A    37.37    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:3,2:5:67.36:67,0,93
16    88803982    rs6500493    C    G    109.05    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.81;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=V394L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88803967_88804054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301015    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:139,0,27
16    88809686    rs9927855    T    C    31.27    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.63;MQ0=0;MQRankSum=-0.55;QD=3.91;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=L106;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88809175_88809898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC138028.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333666    GT:AD:DP:GQ:PL    0/1:5,3:8:61.26:61,0,138
16    88809773    rs8048714    G    C    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.37;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=T135;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88809175_88809898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC138028.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333666    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,109
16    88870034    rs4356464    C    G    36.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.63;MQ0=0;MQRankSum=0.736;QD=9.04;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301019    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:66,0,32
16    88872102    .    G    A    334.68    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=10.46;ReadPosRankSum=-0.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378364    GT:AD:DP:GQ:PL    0/1:19,13:32:99:365,0,603
16    88872145    rs507329    T    C    945.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_AMINO_ACID_CHANGE=C234R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88872132_88872277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301019    GT:AD:DP:GQ:PL    1/1:0,30:30:78.23:979,78,0
16    88872229    rs480727    A    G    146.34    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=17;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.415;QD=8.61;ReadPosRankSum=-0.342;SNPEFF_AMINO_ACID_CHANGE=T262A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88872132_88872277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301019    GT:AD:DP:GQ:PL    0/1:10,7:17:99:176,0,277
16    88872511    rs510862    T    C    117.29    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=10.66;ReadPosRankSum=-1.186;SNPEFF_AMINO_ACID_CHANGE=H305;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88872429_88872529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301019    GT:AD:DP:GQ:PL    0/1:5,6:11:99:147,0,173
16    88874632    rs572275    C    G    166.51    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.244;QD=13.88;ReadPosRankSum=1.0;SNPEFF_AMINO_ACID_CHANGE=L529;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88874523_88875665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301019    GT:AD:DP:GQ:PL    0/1:5,7:12:99:197,0,117
16    88876666    rs8191489    C    G    125.69    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;Dels=0.0;FS=4.472;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.933;QD=8.98;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301019    GT:AD:DP:GQ:PL    0/1:9,5:14:99:156,0,270
16    88893013    rs3859024    C    G    33.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=5.53;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:3,3:6:63.16:63,0,110
16    88901850    rs11076721    T    A    287.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=12;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=23.96;ReadPosRankSum=0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:3,9:12:88.11:318,0,88
16    88902183    rs1064315    G    A    319.54    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.287;DB;DP=29;Dels=0.0;FS=1.549;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.109;QD=11.02;ReadPosRankSum=0.109;SNPEFF_AMINO_ACID_CHANGE=H161;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_88902133_88902257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542788    GT:AD:DP:GQ:PL    0/1:14,15:29:99:350,0,424
16    88902276    rs12934499    C    T    289.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=22;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.394;QD=13.14;ReadPosRankSum=1.576;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:11,11:22:99:319,0,299
16    88902471    rs2269335    G    T    63.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=5.74;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:6,5:11:93.13:93,0,165
16    88902484    rs2269334    T    C    162.02    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=2.632;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=14.73;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:5,6:11:99:192,0,159
16    88902518    rs2269333    A    G    200.13    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.715;QD=18.19;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:3,8:11:49.29:230,0,49
16    88902780    rs12444543    A    G    73.89    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.24;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:3,5:8:98.10:104,0,98
16    88903896    rs3784883    C    T    34.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=4.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:4,3:7:64.93:65,0,151
16    88904426    rs117624874    C    T    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
16    88907283    rs8054994    G    T    187.70    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=17.06;ReadPosRankSum=-1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:4,7:11:83.99:218,0,84
16    88909095    rs35137494    G    A    142.43    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=13;Dels=0.0;FS=10.925;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.529;QD=10.96;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268695    GT:AD:DP:GQ:PL    0/1:8,5:13:99:172,0,200
16    88927221    rs3826061    T    C    38.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPN1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378358    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:68,0,29
16    88931363    .    A    AGGGAG    452.30    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DP=16;FS=5.434;HRun=0;HaplotypeScore=70.6606;IndelType=I;MQ=57.68;MQ0=0;MQRankSum=0.66;QD=28.27;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301021    GT:AD:DP:GQ:PL    0/1:9,6:16:99:491,0,311
16    88931914    rs889753    T    C    95.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=9.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301021    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,215
16    88958282    rs3743541    C    G    31.51    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.573;QD=3.15;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBFA2T3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268679    GT:AD:DP:GQ:PL    0/1:7,3:10:61.50:62,0,173
16    89016494    rs12102677    A    C    80.77    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.835;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.86;MQ0=0;MQRankSum=-1.239;QD=6.21;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:8,5:13:99:111,0,274
16    89016611    rs67473005    TC    T    107.12    QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=5.173;DB;DP=109;FS=1.51;HRun=4;HaplotypeScore=429.0652;IndelType=D;MQ=52.97;MQ0=0;MQRankSum=-2.665;QD=0.97;ReadPosRankSum=1.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:98,13:109:99:146,0,3608
16    89016732    rs111763399    G    A    167.19    QDFilter2    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.317;DB;DP=174;Dels=0.0;FS=3.639;HRun=0;HaplotypeScore=6.2947;MQ=48.54;MQ0=9;MQRankSum=-7.742;QD=0.96;ReadPosRankSum=-3.105;SNPEFF_AMINO_ACID_CHANGE=G69D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89016665_89017932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:128,44:174:99:197,0,3503
16    89016735    rs12930980    A    T    164.12    QDFilter2    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=2.229;DB;DP=169;Dels=0.0;FS=1.001;HRun=0;HaplotypeScore=5.4038;MQ=48.33;MQ0=11;MQRankSum=-8.229;QD=0.97;ReadPosRankSum=-3.159;SNPEFF_AMINO_ACID_CHANGE=Q70L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89016665_89017932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:119,48:169:99:194,0,3379
16    89016761    .    C    T    3315.47    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=1.241;DP=178;Dels=0.0;FS=17.402;HRun=0;HaplotypeScore=3.5266;MQ=50.61;MQ0=7;MQRankSum=7.635;QD=18.63;ReadPosRankSum=2.528;SNPEFF_AMINO_ACID_CHANGE=R79C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89016665_89017932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:73,105:178:99:3315,0,864
16    89016884    rs12924185    C    T    2654.06    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.753;DB;DP=247;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5553;MQ=53.78;MQ0=1;MQRankSum=0.017;QD=10.75;ReadPosRankSum=1.156;SNPEFF_AMINO_ACID_CHANGE=R120W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89016665_89017932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:132,115:247:99:2684,0,3383
16    89017334    rs28617399    C    T    1509.68    MQFilter40    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=3.935;DB;DP=239;Dels=0.0;FS=4.349;HRun=0;HaplotypeScore=5.4645;MQ=31.29;MQ0=55;MQRankSum=-0.034;QD=6.32;ReadPosRankSum=0.291;SNPEFF_AMINO_ACID_CHANGE=R270W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89016665_89017932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:137,102:239:99:1540,0,1762
16    89017471    .    A    G    225.24    QDFilter2    AB=0.858;AC=1;AF=0.50;AN=2;BaseQRankSum=2.46;DP=148;Dels=0.0;FS=13.993;HRun=2;HaplotypeScore=1.6545;MQ=46.54;MQ0=3;MQRankSum=-0.275;QD=1.52;ReadPosRankSum=-3.626;SNPEFF_AMINO_ACID_CHANGE=G315;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89016665_89017932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:127,21:148:99:255,0,3362
16    89017617    rs71395351    G    C    500.34    PASS    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=3.686;DB;DP=190;Dels=0.0;FS=3.752;HRun=3;HaplotypeScore=0.9997;MQ=48.02;MQ0=6;MQRankSum=0.495;QD=2.63;ReadPosRankSum=-3.911;SNPEFF_AMINO_ACID_CHANGE=R364P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89016665_89017932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:154,36:190:99:530,0,3891
16    89017620    rs71395352    C    G    477.61    PASS    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.927;DB;DP=196;Dels=0.0;FS=1.552;HRun=0;HaplotypeScore=0.9997;MQ=48.94;MQ0=5;MQRankSum=0.855;QD=2.44;ReadPosRankSum=-3.678;SNPEFF_AMINO_ACID_CHANGE=P365R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89016665_89017932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092384.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378347    GT:AD:DP:GQ:PL    0/1:155,40:196:99:508,0,4403
16    89167140    rs7201122    G    C    565.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=28.29;SNPEFF_AMINO_ACID_CHANGE=A17;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89167070_89167755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:599,45,0
16    89167395    rs6500526    C    T    345.22    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=3.061;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.6;MQ0=0;MQRankSum=-0.259;QD=6.9;ReadPosRankSum=-0.216;SNPEFF_AMINO_ACID_CHANGE=C102;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89167070_89167755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:33,17:50:99:375,0,884
16    89167404    rs7193255    T    C    361.98    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.74;DB;DP=55;Dels=0.0;FS=1.13;HRun=0;HaplotypeScore=1.8924;MQ=58.73;MQ0=0;MQRankSum=-0.423;QD=6.58;ReadPosRankSum=-0.273;SNPEFF_AMINO_ACID_CHANGE=D105;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89167070_89167755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:34,21:55:99:392,0,1014
16    89167431    rs6500527    G    C    506.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.392;DB;DP=49;Dels=0.0;FS=1.115;HRun=1;HaplotypeScore=0.6651;MQ=59.05;MQ0=0;MQRankSum=-1.122;QD=10.34;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=A114;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89167070_89167755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:28,21:49:99:536,0,787
16    89167443    rs6500528    T    C    418.04    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.153;DB;DP=52;Dels=0.0;FS=4.175;HRun=0;HaplotypeScore=1.399;MQ=57.92;MQ0=0;MQRankSum=0.029;QD=8.04;ReadPosRankSum=0.852;SNPEFF_AMINO_ACID_CHANGE=S118;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89167070_89167755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:31,21:52:99:448,0,898
16    89167458    rs6500529    C    A    414.20    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.797;DB;DP=47;Dels=0.0;FS=4.591;HRun=0;HaplotypeScore=0.9933;MQ=58.2;MQ0=0;MQRankSum=-0.164;QD=8.81;ReadPosRankSum=1.39;SNPEFF_AMINO_ACID_CHANGE=V123;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89167070_89167755;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:29,18:47:99:444,0,882
16    89168911    rs7200676    T    C    186.28    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=57.05;MQ0=0;MQRankSum=-0.742;QD=23.28;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541755    GT:AD:DP:GQ:PL    0/1:1,6:8:16.73:216,0,17
16    89168935    rs4782458    G    C    78.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=13.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541755    GT:AD:DP:GQ:PL    0/1:2,4:6:54.52:108,0,55
16    89168981    rs4782457    T    C    196.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=14.05;ReadPosRankSum=0.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541755    GT:AD:DP:GQ:PL    0/1:7,7:14:99:227,0,247
16    89169205    rs4782456    C    G    203.71    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.888;QD=15.67;ReadPosRankSum=-0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537290    GT:AD:DP:GQ:PL    0/1:2,11:13:51.12:234,0,51
16    89169219    rs144103499    CCT    C    263.17    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=55.9595;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=0.067;QD=29.24;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537290    GT:AD:DP:GQ:PL    0/1:2,7:9:94.82:302,0,95
16    89169312    rs4782455    T    C    88.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537290    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
16    89178457    .    G    GTGCCTGCTCATCTTCCCACCGAGTGCTTCCTTTCCTCCG    5182.86    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=4.525;DP=74;FS=7.377;HRun=0;HaplotypeScore=2332.8081;IndelType=I;MQ=49.88;MQ0=0;MQRankSum=-3.435;QD=70.04;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:55,6:74:99:5183,0,6899
16    89178458    .    T    C    102.78    HaplotypeScoreFilter13;QDFilter2    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.502;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.995;MQ=49.88;MQ0=0;MQRankSum=1.384;QD=1.39;ReadPosRankSum=-4.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:60,8:74:99:133,0,1399
16    89178773    rs4782449    A    G    234.05    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.049;QD=13.0;ReadPosRankSum=-1.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:7,11:18:99:264,0,227
16    89178839    rs4782329    T    C    49.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=-0.937;QD=7.06;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:3,4:7:79.41:79,0,99
16    89180664    rs9940965    C    G    465.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:498,42,0
16    89180883    rs3743979    G    A    331.67    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=1.032;DB;DP=32;Dels=0.0;FS=3.467;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.635;QD=10.36;ReadPosRankSum=0.397;SNPEFF_AMINO_ACID_CHANGE=V107M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89180747_89180895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378345    GT:AD:DP:GQ:PL    0/1:21,11:32:99:362,0,560
16    89180935    rs3743980    G    T    143.92    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=20;Dels=0.0;FS=5.379;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.872;QD=7.2;ReadPosRankSum=0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537895    GT:AD:DP:GQ:PL    0/1:13,7:20:99:174,0,443
16    89187378    rs3743983    G    C    100.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-2.181;QD=8.36;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:6,6:12:99:130,0,217
16    89199651    rs12447947    G    A    580.19    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=1.331;QD=12.61;ReadPosRankSum=0.011;SNPEFF_AMINO_ACID_CHANGE=L184;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89199544_89199670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378345    GT:AD:DP:GQ:PL    0/1:24,21:46:99:610,0,724
16    89212200    rs4302032    A    G    150.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544543    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:183,15,0
16    89226845    rs117495642    A    G    55.27    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=1.9532;MQ=35.14;MQ0=0;MQRankSum=0.358;QD=7.9;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:2,4:7:58.40:85,0,58
16    89226862    .    TTG    T    181.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DP=8;FS=0.0;HRun=0;HaplotypeScore=106.6343;IndelType=D;MQ=34.44;MQ0=0;MQRankSum=0.198;QD=22.71;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:3,5:8:99:221,0,101
16    89226865    .    C    CA    176.81    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DP=9;FS=0.0;HRun=0;HaplotypeScore=110.1387;IndelType=I;MQ=38.13;MQ0=0;MQRankSum=-0.198;QD=19.65;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:4,5:9:62.90:216,0,63
16    89226869    .    G    A    73.26    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.9916;MQ=38.13;MQ0=0;MQRankSum=-1.495;QD=8.14;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:3,6:9:52.37:103,0,52
16    89226873    rs113949453    A    AC    145.01    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=106.2594;IndelType=I;MQ=39.12;MQ0=0;MQRankSum=-1.495;QD=18.13;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317447    GT:AD:DP:GQ:PL    0/1:3,5:8:47.01:184,0,47
16    89234676    rs12597281    A    G    194.37    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=9.89;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=14.95;ReadPosRankSum=0.377;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289746    GT:AD:DP:GQ:PL    0/1:6,7:13:99:224,0,186
16    89234948    rs12922670    C    A    94.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=9;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=10.47;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=T88K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89234517_89235555;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378340    GT:AD:DP:GQ:PL    0/1:5,4:9:99:124,0,130
16    89246670    rs59865771    T    C    79.97    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.344;QD=5.71;ReadPosRankSum=0.636;SNPEFF_AMINO_ACID_CHANGE=D88;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89246608_89246763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289746    GT:AD:DP:GQ:PL    0/1:10,4:14:99:110,0,292
16    89251776    rs58079876    G    A    152.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=15.21;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521087    GT:AD:DP:GQ:PL    0/1:4,6:10:99:182,0,128
16    89251798    rs2287356    C    T    110.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.39;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521087    GT:AD:DP:GQ:PL    0/1:2,4:6:42.06:140,0,42
16    89258747    rs75791347    A    C    42.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=6.11;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=K584Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89258613_89258852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289746    GT:AD:DP:GQ:PL    0/1:3,4:7:72.74:73,0,74
16    89259993    rs3815615    A    G    43.64    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=13;Dels=0.0;FS=6.264;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.74;QD=3.36;ReadPosRankSum=1.294;SNPEFF_AMINO_ACID_CHANGE=Q657;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89259878_89260014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289746    GT:AD:DP:GQ:PL    0/1:9,4:13:73.63:74,0,270
16    89265087    rs61732365    A    G    129.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=10.8;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289746    GT:AD:DP:GQ:PL    0/1:6,6:12:99:160,0,170
16    89265101    rs74640353    C    T    140.32    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=11.69;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289746    GT:AD:DP:GQ:PL    0/1:7,5:12:99:170,0,186
16    89265466    rs12926888    A    G    110.57    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=18.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDH15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289746    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:141,0,27
16    89287613    rs10586525    CAG    C    289.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=29.6424;IndelType=D;MQ=59.81;MQ0=0;QD=41.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:331,21,0
16    89288418    rs9931258    A    G    838.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:872,66,0
16    89289373    rs10560227    CAG    C    251.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=25.7565;IndelType=D;MQ=60.0;MQ0=0;QD=41.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:294,18,0
16    89289912    rs9922578    G    C    127.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
16    89289963    rs9930572    C    G    124.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
16    89291210    rs113560259    G    GGTGA    407.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=36.7828;IndelType=I;MQ=52.04;MQ0=0;QD=50.95;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,6:8:18.06:450,18,0
16    89291309    rs28533907    A    T    189.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:222,18,0
16    89291357    rs4785779    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
16    89291945    rs11464538    A    AT    2607.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=2;HaplotypeScore=784.2337;IndelType=I;MQ=57.18;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:7,71:78:99:2649,223,0
16    89291951    rs12926997    C    T    56.71    HaplotypeScoreFilter13;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=61.168;MQ=56.74;MQ0=0;QD=0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,78:78:9.01:89,9,0
16    89292892    rs28444583    C    T    192.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:225,18,0
16    89292920    rs11642976    A    G    291.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC009113.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378337    GT:AD:DP:GQ:PL    1/1:0,10:11:30.06:324,30,0
16    89293271    rs28417933    A    C    3473.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.661;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.76;MQ0=0;MQRankSum=0.99;QD=35.44;ReadPosRankSum=-1.167;SNPEFF_AMINO_ACID_CHANGE=K122T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89293102_89295122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF778;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306502    GT:AD:DP:GQ:PL    1/1:1,97:98:99:3473,231,0
16    89293614    rs4785626    A    G    2665.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;QD=35.54;SNPEFF_AMINO_ACID_CHANGE=E236;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89293102_89295122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF778;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306502    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2699,208,0
16    89294184    rs4785627    G    A    4068.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=59.58;MQ0=0;QD=36.65;SNPEFF_AMINO_ACID_CHANGE=A426;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89293102_89295122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF778;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306502    GT:AD:DP:GQ:PL    1/1:0,110:111:99:4068,298,0
16    89294381    rs28415940    T    C    2838.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=33.79;SNPEFF_AMINO_ACID_CHANGE=I492T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89293102_89295122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF778;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306502    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2872,211,0
16    89294439    rs9921361    G    T    3000.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=Q511H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89293102_89295122;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF778;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306502    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3034,223,0
16    89294511    rs28638280    C    T    3473.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=36.56;SNPEFF_AMINO_ACID_CHANGE=T535;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89293102_89295122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF778;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306502    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3473,253,0
16    89294697    rs60437616    C    T    2482.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=35.46;SNPEFF_AMINO_ACID_CHANGE=H597;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89293102_89295122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF778;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306502    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2515,190,0
16    89341168    rs12709112    C    G    137.68    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.155;DB;DP=24;Dels=0.0;FS=2.682;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.735;QD=5.74;ReadPosRankSum=-0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    0/1:18,6:24:99:168,0,508
16    89346883    rs60520302    C    G    113.11    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=36.07;MQ0=0;MQRankSum=-1.214;QD=9.43;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=A2023P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89345480_89352057;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    0/1:5,7:12:76.24:143,0,76
16    89348018    rs72821356    C    T    1351.79    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.99;DB;DP=119;Dels=0.0;FS=1.523;HRun=0;HaplotypeScore=0.6651;MQ=59.61;MQ0=0;MQRankSum=1.767;QD=11.36;ReadPosRankSum=-0.797;SNPEFF_AMINO_ACID_CHANGE=G1644;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89345480_89352057;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    0/1:67,52:119:99:1382,0,1990
16    89349128    rs61741725    G    A    732.14    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=3.608;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.33;QD=13.81;ReadPosRankSum=0.518;SNPEFF_AMINO_ACID_CHANGE=A1274;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89345480_89352057;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    0/1:26,27:53:99:762,0,749
16    89349377    rs62000377    G    C    609.59    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.829;DB;DP=74;Dels=0.0;FS=5.107;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.309;QD=8.24;ReadPosRankSum=1.211;SNPEFF_AMINO_ACID_CHANGE=A1191;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89345480_89352057;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    0/1:49,25:74:99:640,0,1435
16    89350178    rs2279349    G    A    1721.03    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=3.875;DB;DP=111;Dels=0.0;FS=2.525;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=0.879;QD=15.5;ReadPosRankSum=0.285;SNPEFF_AMINO_ACID_CHANGE=T543;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89350139_89351806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330736    GT:AD:DP:GQ:PL    0/1:51,60:111:99:1751,0,1429
16    89367149    rs72803314    C    T    273.59    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.664;QD=22.8;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    0/1:3,9:12:83.85:304,0,84
16    89371827    rs3114912    G    A    100.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=10.03;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    0/1:5,5:10:99:130,0,179
16    89371839    rs2277908    G    A    103.97    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=11.55;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,170
16    89383725    rs3114908    T    C    32.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301030    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
16    89612979    rs139537418    AC    A    113.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=167.8812;IndelType=D;MQ=55.49;MQ0=0;MQRankSum=-0.158;QD=4.71;ReadPosRankSum=0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268704    GT:AD:DP:GQ:PL    1/1:7,14:24:1.24:151,1,0
16    89629218    rs258327    A    G    634.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.44;MQ0=0;QD=26.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467736    GT:AD:DP:GQ:PL    1/1:0,24:24:60.13:668,60,0
16    89629229    rs72805539    A    T    555.72    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.234;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.97;MQ0=0;MQRankSum=-0.424;QD=16.84;ReadPosRankSum=-0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467736    GT:AD:DP:GQ:PL    0/1:13,20:33:99:586,0,389
16    89645437    rs369230    G    T    69.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.034;QD=6.28;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268720    GT:AD:DP:GQ:PL    0/1:7,4:11:99:99,0,183
16    89650371    rs408800    T    G    278.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525982    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:312,27,0
16    89651175    rs3830555    T    TC    247.37    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;FS=0.0;HRun=4;HaplotypeScore=33.607;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.468;QD=17.67;ReadPosRankSum=-1.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525982    GT:AD:DP:GQ:PL    0/1:6,8:14:99:286,0,162
16    89652796    rs62068677    G    C    55.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525982    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
16    89653032    rs452176    G    A    593.62    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.734;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6201;MQ=60.0;MQ0=0;MQRankSum=-1.527;QD=14.84;ReadPosRankSum=-0.763;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525982    GT:AD:DP:GQ:PL    0/1:18,22:40:99:624,0,455
16    89653175    rs147819908    G    C    229.60    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.503;DB;DP=32;Dels=0.0;FS=8.243;HRun=1;HaplotypeScore=0.7887;MQ=59.28;MQ0=0;MQRankSum=1.174;QD=7.17;ReadPosRankSum=-0.964;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525982    GT:AD:DP:GQ:PL    0/1:23,9:32:99:260,0,764
16    89656163    rs397564    A    G    104.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532500    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:137,12,0
16    89656251    rs464349    T    C    260.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532500    GT:AD:DP:GQ:PL    1/1:0,12:12:24.07:294,24,0
16    89661807    rs12445560    C    T    386.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.217;DB;DP=26;Dels=0.0;FS=7.282;HRun=0;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;MQRankSum=1.043;QD=14.87;ReadPosRankSum=1.333;SNPEFF_AMINO_ACID_CHANGE=G165;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89661775_89661831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529800    GT:AD:DP:GQ:PL    0/1:13,13:26:99:417,0,234
16    89662837    rs12447806    C    T    289.24    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.188;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.2;MQ0=0;MQRankSum=0.329;QD=9.97;ReadPosRankSum=0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529800    GT:AD:DP:GQ:PL    0/1:17,12:29:99:319,0,517
16    89662990    rs694285    T    C    380.05    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=23;Dels=0.0;FS=2.143;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.472;QD=16.52;ReadPosRankSum=-0.283;SNPEFF_AMINO_ACID_CHANGE=G546;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89662892_89663654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319518    GT:AD:DP:GQ:PL    0/1:9,14:23:99:410,0,283
16    89663072    rs659974    G    A    191.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=21.25;ReadPosRankSum=2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPNE7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529800    GT:AD:DP:GQ:PL    0/1:3,6:9:61.92:221,0,62
16    89696999    rs395593    C    T    65.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261615    GT:AD:DP:GQ:PL    1/1:0,3:3:9:98,9,0
16    89702620    rs2070992    G    C    216.11    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.382;QD=19.65;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261615    GT:AD:DP:GQ:PL    0/1:3,8:11:79.57:246,0,80
16    89703797    rs34422500    C    T    230.61    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=2.686;DB;DP=29;Dels=0.0;FS=1.617;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.276;QD=7.95;ReadPosRankSum=0.427;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261615    GT:AD:DP:GQ:PL    0/1:17,12:29:99:261,0,528
16    89704365    rs1126464    G    C    305.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=15;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.429;QD=20.35;ReadPosRankSum=-0.429;SNPEFF_AMINO_ACID_CHANGE=E351Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89704244_89704379;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPEP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261615    GT:AD:DP:GQ:PL    0/1:5,10:15:99:335,0,127
16    89720409    rs258338    T    A    1116.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.25;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253475    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1149,84,0
16    89724572    rs154664    T    C    1109.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301031    GT:AD:DP:GQ:PL    1/1:0,34:34:90.26:1143,90,0
16    89735923    rs9937322    G    C    207.34    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.065;DB;DP=23;Dels=0.0;FS=2.793;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.032;QD=9.01;ReadPosRankSum=1.388;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301031    GT:AD:DP:GQ:PL    0/1:15,8:23:99:237,0,486
16    89755903    rs258322    A    G    133.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331006    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
16    89757132    rs12598665    C    G    99.04    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.169;DB;DP=18;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.591;QD=5.5;ReadPosRankSum=0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503560    GT:AD:DP:GQ:PL    0/1:13,5:18:99:129,0,334
16    89757199    rs62068364    C    T    79.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.79;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503560    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:109,0,30
16    89757725    rs164742    A    G    74.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.99;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503560    GT:AD:DP:GQ:PL    0/1:2,3:5:67.94:105,0,68
16    89758973    rs187282    A    G    699.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000502547    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:732,54,0
16    89760552    rs460057    T    C    1042.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8245;MQ=58.83;MQ0=0;QD=28.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378277    GT:AD:DP:GQ:PL    1/1:0,36:36:81.25:1076,81,0
16    89760652    rs2162943    C    T    1212.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378277    GT:AD:DP:GQ:PL    1/1:0,33:33:90.30:1245,90,0
16    89760712    rs2115400    G    A    773.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378277    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:807,60,0
16    89763619    rs3751696    A    T    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331006    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
16    89774396    rs1110331    G    A    586.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261625    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:620,48,0
16    89774411    rs11860230    T    C    367.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=24.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261625    GT:AD:DP:GQ:PL    1/1:0,15:15:36.06:401,36,0
16    89777761    rs12920315    C    T    436.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_AMINO_ACID_CHANGE=V269;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89777735_89777820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389386    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:469,36,0
16    89779139    rs111488775    AGCT    A    222.01    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=44.4624;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=1.031;QD=20.18;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261625    GT:AD:DP:GQ:PL    0/1:5,6:11:99:261,0,302
16    89782556    rs140019243    C    T    81.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=16.26;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261625    GT:AD:DP:GQ:PL    0/1:2,3:5:29.72:111,0,30
16    89782989    rs7206570    A    G    2569.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_AMINO_ACID_CHANGE=I104;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89782870_89783032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389386    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2603,214,0
16    89783187    rs4785706    C    T    446.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.77;SNPEFF_AMINO_ACID_CHANGE=K104;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89783138_89783230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261625    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:480,36,0
16    89785820    rs56112321    T    C    656.72    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.824;DB;DP=37;Dels=0.0;FS=5.617;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.947;QD=17.75;ReadPosRankSum=-2.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C16orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389386    GT:AD:DP:GQ:PL    0/1:16,21:37:99:687,0,512
16    89789311    rs8056353    G    A    149.37    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.972;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.995;MQ=58.78;MQ0=0;MQRankSum=-1.31;QD=7.86;ReadPosRankSum=0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF276;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289816    GT:AD:DP:GQ:PL    0/1:12,7:19:99:179,0,444
16    89789898    rs6500437    T    C    380.92    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.823;DB;DP=21;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.238;QD=18.14;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=W188R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89789668_89790117;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF276;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000289816    GT:AD:DP:GQ:PL    0/1:8,13:21:99:411,0,223
16    89795485    rs7204478    C    T    67.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=11.31;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF276;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289816    GT:AD:DP:GQ:PL    0/1:3,3:6:97.84:98,0,102
16    89800058    rs3803689    C    T    451.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:485,36,0
16    89804335    rs17233826    CT    C    607.42    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=3.815;DB;DP=44;FS=1.157;HRun=1;HaplotypeScore=146.7356;IndelType=D;MQ=58.76;MQ0=0;MQRankSum=0.071;QD=13.81;ReadPosRankSum=-1.469;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    0/1:25,19:44:99:646,0,959
16    89804624    rs17227424    G    C    133.81    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=19;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=0.489;QD=7.04;ReadPosRankSum=-0.044;SNPEFF_AMINO_ACID_CHANGE=E391D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89804384_89804689;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF276;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446326    GT:AD:DP:GQ:PL    0/1:10,9:19:99:164,0,320
16    89805261    rs1800359    A    G    1215.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1248,102,0
16    89806347    rs7195906    A    T    555.31    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.585;DB;DP=58;Dels=0.0;FS=2.589;HRun=1;HaplotypeScore=0.9159;MQ=59.6;MQ0=0;MQRankSum=-1.535;QD=9.57;ReadPosRankSum=0.042;SNPEFF_AMINO_ACID_CHANGE=I307N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89806149_89806507;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    0/1:36,22:58:99:585,0,1188
16    89808956    .    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF276;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289816    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
16    89815217    rs1800345    C    T    45.76    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.15;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    0/1:1,4:5:29.55:76,0,30
16    89818265    rs11646910    G    A    33.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.12;MQ0=0;MQRankSum=0.0;QD=6.64;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    0/1:3,2:5:46.10:63,0,46
16    89818310    rs3743862    G    C    274.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.32;MQ0=0;QD=30.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
16    89818340    rs3743861    G    C    166.15    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.21;MQ0=0;MQRankSum=0.573;QD=15.1;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    0/1:3,7:10:78.58:196,0,79
16    89818491    rs3743860    T    C    2564.39    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=2.032;DB;DP=169;Dels=0.0;FS=6.156;HRun=0;HaplotypeScore=7.5864;MQ=59.17;MQ0=0;MQRankSum=1.986;QD=15.17;ReadPosRankSum=0.842;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    0/1:84,85:169:99:2594,0,2520
16    89824753    rs12709093    T    C    40.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.54;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305699    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:71,0,30
16    89831510    rs2159116    C    A    224.11    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.276;QD=14.94;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:8,7:15:99:254,0,208
16    89836323    rs7195066    C    T    361    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.918;DB;DP=34;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.806;QD=10.62;ReadPosRankSum=-1.228;SNPEFF_AMINO_ACID_CHANGE=G809D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89836245_89836432;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:21,13:34:99:391,0,663
16    89836507    rs62989960    T    C    212.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
16    89838078    rs1800340    A    G    755.71    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.294;DB;DP=56;Dels=0.0;FS=2.334;HRun=0;HaplotypeScore=0.6651;MQ=59.59;MQ0=0;MQRankSum=0.419;QD=13.49;ReadPosRankSum=1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:30,26:56:99:786,0,933
16    89845194    rs1800337    A    G    484.49    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.834;DB;DP=42;Dels=0.0;FS=2.885;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.365;QD=11.54;ReadPosRankSum=1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:23,19:42:99:514,0,699
16    89845197    rs183513839    G    A    670.81    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.105;DB;DP=45;Dels=0.0;FS=4.491;HRun=0;HaplotypeScore=0.0;MQ=56.31;MQ0=0;MQRankSum=0.739;QD=14.91;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:21,24:45:99:701,0,571
16    89846195    rs1800335    A    G    62.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.7;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:93,0,29
16    89849480    rs2239359    C    T    747.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=G501S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89849415_89849510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:780,57,0
16    89849583    rs2239360    C    T    32.60    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.66;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:5,2:7:62.59:63,0,150
16    89857964    rs1800330    T    C    181.69    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=25;Dels=0.0;FS=1.893;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.191;QD=7.27;ReadPosRankSum=0.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:18,7:25:99:212,0,555
16    89858024    rs6500450    A    G    200.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.14;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:9,9:18:99:231,0,287
16    89858184    rs6500451    A    G    271.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:304,27,0
16    89858505    rs6500452    T    C    646.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.078;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7653;MQ=59.07;MQ0=0;MQRankSum=0.252;QD=12.93;ReadPosRankSum=-1.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:25,25:50:99:676,0,670
16    89858525    rs1800287    C    G    456.45    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=4.062;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.39;MQ0=0;MQRankSum=-2.1;QD=12.01;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:22,16:38:99:486,0,562
16    89858657    rs6500453    C    G    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,104
16    89858759    rs17226159    C    T    364.62    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.975;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.06;MQ0=0;MQRankSum=-0.076;QD=18.23;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:9,11:20:99:395,0,280
16    89859008    rs3856    G    A    311.14    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.304;QD=15.56;ReadPosRankSum=0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:9,11:20:99:341,0,318
16    89859015    rs67724854    GT    G    335.54    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=2.536;DB;DP=18;FS=0.0;HRun=5;HaplotypeScore=93.1824;IndelType=D;MQ=58.71;MQ0=0;MQRankSum=0.725;QD=18.64;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:7,11:18:99:375,0,261
16    89862202    rs17226075    C    T    179    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.27;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389302    GT:AD:DP:GQ:PL    0/1:5,6:11:99:209,0,156
16    89865242    rs10852623    T    C    170.51    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=18.95;ReadPosRankSum=0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534992    GT:AD:DP:GQ:PL    0/1:2,7:9:57.70:201,0,58
16    89866043    rs7190823    T    C    569.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.456;DB;DP=42;Dels=0.0;FS=2.837;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.013;QD=13.55;ReadPosRankSum=1.09;SNPEFF_AMINO_ACID_CHANGE=T234A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89866013_89866046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543736    GT:AD:DP:GQ:PL    0/1:18,24:42:99:599,0,496
16    89866160    rs7186192    A    G    33.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.65;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:2,3:5:63.22:63,0,71
16    89869564    rs76622883    G    A    347.35    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.135;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=59.03;MQ0=0;MQRankSum=2.137;QD=14.47;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:10,14:24:99:377,0,307
16    89869761    rs1800286    T    C    2702.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2736,202,0
16    89874477    rs68094133    AG    A    293.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=150.5498;IndelType=D;MQ=29.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:335,24,0
16    89874486    rs7202331    G    A    196.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=21.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:229,21,0
16    89874559    rs11076627    A    C    530.67    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.967;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.6;MQ0=0;MQRankSum=2.295;QD=13.96;ReadPosRankSum=0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:20,18:38:99:561,0,500
16    89874628    rs1800285    C    T    1402.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.945;DB;DP=90;Dels=0.0;FS=1.465;HRun=2;HaplotypeScore=0.5784;MQ=58.18;MQ0=0;MQRankSum=0.024;QD=15.58;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389301    GT:AD:DP:GQ:PL    0/1:45,45:90:99:1432,0,1556
16    89911681    rs17719345    G    C    286.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=21;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=1.4679;MQ=58.89;MQ0=0;MQRankSum=0.107;QD=13.63;ReadPosRankSum=-1.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378247    GT:AD:DP:GQ:PL    0/1:9,12:21:99:316,0,240
16    89925556    rs7200842    G    A    470.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.89;MQ0=0;QD=22.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378247    GT:AD:DP:GQ:PL    1/1:0,21:21:42.10:503,42,0
16    89930129    rs55999134    G    C    390.93    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=23;Dels=0.0;FS=4.129;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.097;QD=17.0;ReadPosRankSum=-0.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378247    GT:AD:DP:GQ:PL    0/1:8,15:23:99:421,0,255
16    89973777    rs143440936    CTCCCAGT    C    1728.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=605.4346;IndelType=D;MQ=48.29;MQ0=0;MQRankSum=-1.733;QD=48.01;ReadPosRankSum=1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263346    GT:AD:DP:GQ:PL    1/1:6,30:36:83.41:1770,83,0
16    89973796    rs111916961    A    G    119.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.8325;MQ=42.24;MQ0=0;QD=4.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263346    GT:AD:DP:GQ:PL    1/1:0,28:28:15.03:152,15,0
16    89973812    .    C    T    115.06    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.0;MQ0=0;QD=6.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263346    GT:AD:DP:GQ:PL    1/1:0,17:17:15.01:148,15,0
16    89973816    rs190789120    A    C    132.86    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.0;MQ0=0;QD=7.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263346    GT:AD:DP:GQ:PL    1/1:0,17:17:18:166,18,0
16    89973821    .    T    C    137.64    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=30.43;MQ0=0;QD=8.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263346    GT:AD:DP:GQ:PL    1/1:0,16:16:18:171,18,0
16    89973832    rs12927596    G    C    88.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.43;MQ0=0;QD=11.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263346    GT:AD:DP:GQ:PL    1/1:0,8:8:12.01:121,12,0
16    89981303    rs9796835    G    T    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.48;ReadPosRankSum=-1.026;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_16_89979826_89981548;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-566K11.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555427    GT:AD:DP:GQ:PL    0/1:2,2:4:54.69:68,0,55
16    89981345    rs61652828    T    TTG    278.63    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=32.0735;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=27.86;ReadPosRankSum=-0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263346    GT:AD:DP:GQ:PL    0/1:3,7:10:45.84:318,0,46
16    89986154    rs885479    G    A    780.56    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=2.069;DB;DP=58;Dels=0.0;FS=2.439;HRun=1;HaplotypeScore=1.9912;MQ=51.62;MQ0=0;MQRankSum=1.12;QD=13.23;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=R163Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89984287_89987385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC1R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000555147    GT:AD:DP:GQ:PL    0/1:22,36:58:99:811,0,430
16    89986458    rs181269865    C    T    2499.08    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.03;DB;DP=162;Dels=0.0;FS=10.681;HRun=1;HaplotypeScore=2.5073;MQ=59.43;MQ0=0;MQRankSum=0.932;QD=15.43;ReadPosRankSum=0.928;SNPEFF_AMINO_ACID_CHANGE=I264;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_89984287_89987385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC1R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000555147    GT:AD:DP:GQ:PL    0/1:70,91:162:99:2529,0,2024
16    89998794    rs2302898    G    A    35.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.15;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-566K11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554116    GT:AD:DP:GQ:PL    0/1:3,2:5:65.76:66,0,71
16    90002290    rs1135425    T    C    107.85    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.26;MQ0=0;MQRankSum=0.956;QD=13.48;ReadPosRankSum=-1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-566K11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553656    GT:AD:DP:GQ:PL    0/1:3,5:8:68.63:138,0,69
16    90020861    rs7195043    C    T    364.59    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=3.338;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=19.19;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268676    GT:AD:DP:GQ:PL    0/1:7,12:19:99:395,0,185
16    90050880    rs4785759    A    C    243.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=57.05;MQ0=0;MQRankSum=0.368;QD=15.24;ReadPosRankSum=0.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AFG3L1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429663    GT:AD:DP:GQ:PL    0/1:8,8:16:99:274,0,239
16    90066936    rs4785763    A    C    245.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBNDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000002501    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:278,24,0
16    90102835    rs868045    A    G    603.03    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=31;Dels=0.0;FS=1.63;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.177;QD=19.45;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=E170;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_90102789_90102994;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540721    GT:AD:DP:GQ:PL    0/1:10,21:31:99:633,0,254
16    90107043    rs9922090    A    G    30.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC133919.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409768    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
16    90108832    rs2241035    C    T    148.92    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.41;ReadPosRankSum=-2.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC133919.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409768    GT:AD:DP:GQ:PL    0/1:5,6:12:99:179,0,165
16    90109078    rs78319320    G    A    79.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.92;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC133919.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409768    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:110,0,29
16    90109711    rs3743825    A    G    1150.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=33.82;SNPEFF_AMINO_ACID_CHANGE=T440;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_90109604_90109880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536122    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1183,90,0
16    90109756    rs3833069    G    GC    281.31    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;FS=2.35;HRun=6;HaplotypeScore=92.7752;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=-0.122;QD=14.07;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC133919.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409768    GT:AD:DP:GQ:PL    0/1:10,10:20:99:320,0,218
16    90110289    rs1048148    C    A    200.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.031;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.795;QD=11.12;ReadPosRankSum=-0.442;SNPEFF_AMINO_ACID_CHANGE=V73F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_90109310_90110397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC133919.6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000517889    GT:AD:DP:GQ:PL    0/1:9,9:18:99:230,0,298
16    90110950    rs1048149    C    T    393.14    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.63;DB;DP=25;Dels=0.0;FS=4.099;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=15.73;ReadPosRankSum=-0.246;SNPEFF_AMINO_ACID_CHANGE=W23*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_16_90110910_90111031;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC133919.6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000517889    GT:AD:DP:GQ:PL    0/1:11,14:25:99:423,0,337
16    90128224    rs2077426    C    G    1818.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.25;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325921    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1851,153,0
16    90133035    rs12445466    T    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407825    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
16    90133064    rs12444840    A    C    77.30    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.32;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407825    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:107,0,29
16    90133137    rs16966444    G    T    793.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=37.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407825    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:827,63,0
16    90141355    rs12925933    A    C    919.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=57.56;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=D90E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_16_90141324_90141431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414728    GT:AD:DP:GQ:PL    1/1:0,27:27:72.21:953,72,0
16    90141477    rs7196459    T    G    859.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.16;MQ0=0;QD=37.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407825    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:892,66,0
16    90142087    rs35256427    G    A    270.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407825    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:304,24,0
16    90160953    rs9928076    T    C    239.47    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.782;DB;DP=49;Dels=0.0;FS=11.989;HRun=2;HaplotypeScore=0.0;MQ=43.51;MQ0=5;MQRankSum=-5.378;QD=4.89;ReadPosRankSum=2.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC133919.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458979    GT:AD:DP:GQ:PL    0/1:27,22:49:99:269,0,844
16    90161065    rs8051193    A    T    374.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.619;DB;DP=36;Dels=0.0;FS=10.813;HRun=0;HaplotypeScore=0.5784;MQ=42.81;MQ0=1;MQRankSum=-3.444;QD=10.41;ReadPosRankSum=-1.481;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC133919.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458979    GT:AD:DP:GQ:PL    0/1:18,18:36:99:405,0,505
16    90161753    rs6500470    T    C    1595.50    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=4.049;DB;DP=156;Dels=0.0;FS=6.542;HRun=0;HaplotypeScore=3.8427;MQ=41.63;MQ0=2;MQRankSum=-4.183;QD=10.23;ReadPosRankSum=0.992;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC133919.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458979    GT:AD:DP:GQ:PL    0/1:81,75:156:99:1625,0,2294
16    90161852    rs11076666    A    G    529.35    MQFilter40    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=130;Dels=0.0;FS=38.383;HRun=1;HaplotypeScore=5.3002;MQ=39.69;MQ0=6;MQRankSum=-2.235;QD=4.07;ReadPosRankSum=1.065;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC133919.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458979    GT:AD:DP:GQ:PL    0/1:96,34:130:99:559,0,2596
16    90162186    rs4299156    T    C    820.92    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.043;DB;DP=133;Dels=0.0;FS=10.988;HRun=0;HaplotypeScore=6.7826;MQ=46.13;MQ0=13;MQRankSum=-7.881;QD=6.17;ReadPosRankSum=-0.123;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC133919.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458979    GT:AD:DP:GQ:PL    0/1:78,55:133:99:851,0,2493
17    63561    .    G    T    66.70    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.34;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3AL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323434    GT:AD:DP:GQ:PL    0/1:2,3:5:57.19:97,0,57
17    65610    rs62057050    G    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3AL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323434    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
17    96685    rs4985571    G    A    76.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=12.78;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3AL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323434    GT:AD:DP:GQ:PL    0/1:3,3:6:87.70:107,0,88
17    131516    rs12942829    C    A    246.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3AL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323434    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:279,21,0
17    169399    rs11654845    T    C    164.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=16.45;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPH3AL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323434    GT:AD:DP:GQ:PL    0/1:4,6:10:87.32:194,0,87
17    293100    .    G    T    230.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.897;DP=33;Dels=0.0;FS=1.523;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.286;QD=6.97;ReadPosRankSum=-2.043;SNPEFF_AMINO_ACID_CHANGE=T97N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_289769_293285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM101B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329099    GT:AD:DP:GQ:PL    0/1:22,11:33:99:260,0,764
17    423051    rs2034088    T    C    350.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437048    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:383,30,0
17    424880    rs16953156    G    A    931.61    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.881;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.711;QD=14.79;ReadPosRankSum=0.866;SNPEFF_AMINO_ACID_CHANGE=I24;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_424841_424978;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541903    GT:AD:DP:GQ:PL    0/1:31,32:63:99:962,0,887
17    425099    rs11651340    G    T    330.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437048    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:364,30,0
17    435896    rs11650424    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389040    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    436221    rs2304947    G    C    102.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=10.27;ReadPosRankSum=2.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,216
17    440108    rs11653961    A    C    109.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:142,12,0
17    440497    rs7219151    G    A    119.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:149,0,67
17    455232    rs2304949    C    T    108.25    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.65;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:1,4:5:18.39:138,0,18
17    456407    rs2361187    C    T    53.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.43;MQ0=0;QD=17.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    1/1:0,3:3:9:86,9,0
17    456563    rs142478715    C    T    232.38    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=18;Dels=0.0;FS=5.315;HRun=0;HaplotypeScore=0.0;MQ=53.17;MQ0=0;MQRankSum=-0.144;QD=12.91;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:8,10:18:99:262,0,273
17    463843    rs741677    A    G    224.05    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.14;DB;DP=23;Dels=0.0;FS=14.055;HRun=0;HaplotypeScore=0.6651;MQ=58.99;MQ0=0;MQRankSum=-0.775;QD=9.74;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:13,10:23:99:254,0,475
17    465775    rs2075443    G    A    586.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.122;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.0028;MQ=59.49;MQ0=0;MQRankSum=-0.328;QD=13.03;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=Y231;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_465743_465985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401468    GT:AD:DP:GQ:PL    0/1:22,22:45:99:616,0,571
17    504888    rs117255969    T    C    159.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=15.95;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:4,6:10:99:189,0,138
17    505162    rs4968055    A    G    536.35    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.24;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=58.92;MQ0=0;MQRankSum=0.859;QD=13.75;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:21,18:39:99:566,0,641
17    505227    rs7225041    G    C    115.07    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.424;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.07;MQ0=0;MQRankSum=-0.935;QD=8.85;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:7,6:13:99:145,0,248
17    505250    rs4968092    A    G    36.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=1.537;QD=6.09;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:3,3:6:66.55:67,0,101
17    526746    rs73975715    G    A    488.41    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=3.437;DB;DP=43;Dels=0.0;FS=5.045;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.051;QD=11.36;ReadPosRankSum=-1.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:23,20:43:99:518,0,635
17    530339    rs16954064    T    C    141.01    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=12.82;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:6,5:11:99:171,0,201
17    600502    rs2657633    C    T    207.49    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.722;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.01;QD=12.21;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:9,8:17:99:237,0,312
17    602469    rs2543781    G    C    198.17    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.927;QD=11.66;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:10,7:17:99:228,0,356
17    617869    rs11558129    G    A    308.30    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.956;DB;DP=32;Dels=0.0;FS=1.455;HRun=1;HaplotypeScore=0.0;MQ=57.95;MQ0=0;MQRankSum=-0.171;QD=9.63;ReadPosRankSum=-0.133;SNPEFF_AMINO_ACID_CHANGE=I27;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_617863_618096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:18,14:32:99:338,0,481
17    618100    rs2955626    C    G    33.19    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=3.522;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.159;QD=3.69;ReadPosRankSum=1.881;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291074    GT:AD:DP:GQ:PL    0/1:4,5:9:63.18:63,0,146
17    648186    rs7813    G    A    498.19    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.657;DB;DP=42;Dels=0.0;FS=2.709;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.379;QD=11.86;ReadPosRankSum=0.404;SNPEFF_AMINO_ACID_CHANGE=R1033C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_647661_651272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319004    GT:AD:DP:GQ:PL    0/1:23,19:42:99:528,0,717
17    648498    rs2740349    C    T    529.45    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.994;DB;DP=26;Dels=0.0;FS=3.791;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.647;QD=20.36;ReadPosRankSum=-0.269;SNPEFF_AMINO_ACID_CHANGE=D929N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_647661_651272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319004    GT:AD:DP:GQ:PL    0/1:9,17:26:99:559,0,264
17    649232    rs3744741    C    T    623.50    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=43;Dels=0.0;FS=3.513;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=14.5;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=R684Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_647661_651272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319004    GT:AD:DP:GQ:PL    0/1:21,22:43:99:653,0,598
17    649547    rs910925    G    C    1132.79    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.782;DB;DP=87;Dels=0.0;FS=5.887;HRun=2;HaplotypeScore=2.1445;MQ=59.74;MQ0=0;MQRankSum=1.87;QD=13.02;ReadPosRankSum=0.963;SNPEFF_AMINO_ACID_CHANGE=A579G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_647661_651272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319004    GT:AD:DP:GQ:PL    0/1:44,43:87:99:1163,0,1414
17    649935    rs2740348    G    C    1014.41    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.446;DB;DP=71;Dels=0.0;FS=0.909;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.534;QD=14.29;ReadPosRankSum=0.714;SNPEFF_AMINO_ACID_CHANGE=Q450E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_647661_651272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319004    GT:AD:DP:GQ:PL    0/1:35,36:71:99:1044,0,1128
17    656304    rs473250    A    C    218.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.37;MQ0=0;QD=31.19;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319004    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:251,21,0
17    673895    rs2644706    C    G    420.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLOD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301328    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
17    673934    rs78487684    T    C    41.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7331;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.92;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLOD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301328    GT:AD:DP:GQ:PL    0/1:3,3:6:71.49:71,0,108
17    674393    rs11649996    A    G    114.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=16.29;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLOD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301328    GT:AD:DP:GQ:PL    0/1:3,4:7:94.77:144,0,95
17    685606    rs16955542    G    A    276.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=8.675;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.884;QD=18.46;ReadPosRankSum=0.53;SNPEFF_AMINO_ACID_CHANGE=P168L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_685482_685691;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLOD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397393    GT:AD:DP:GQ:PL    0/1:6,9:15:99:307,0,208
17    686133    rs2750013    A    G    246.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLOD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397393    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
17    686296    rs112614179    GT    G    816.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.721;DB;DP=46;FS=0.0;HRun=12;HaplotypeScore=177.5989;IndelType=D;MQ=59.97;MQ0=0;MQRankSum=1.759;QD=17.74;ReadPosRankSum=0.721;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLOD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397393    GT:AD:DP:GQ:PL    1/1:6,39:46:66.14:858,66,0
17    686589    rs113638969    C    CT    41.75    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=16;FS=3.979;HRun=13;HaplotypeScore=68.7583;IndelType=I;MQ=62.0;MQ0=0;MQRankSum=0.365;QD=2.61;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304478    GT:AD:DP:GQ:PL    0/1:10,6:16:80.78:81,0,93
17    686638    rs148690836    G    A    107.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=61.53;MQ0=0;MQRankSum=-1.754;QD=15.34;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304478    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,102
17    686643    rs12945945    C    G    63.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=61.53;MQ0=0;MQRankSum=1.3;QD=9.13;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304478    GT:AD:DP:GQ:PL    0/1:4,3:7:93.92:94,0,117
17    694758    .    C    CCTGT    1068.23    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.685;DP=29;FS=2.341;HRun=0;HaplotypeScore=106.9111;IndelType=I;MQ=56.25;MQ0=0;MQRankSum=-1.75;QD=36.84;ReadPosRankSum=-0.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304478    GT:AD:DP:GQ:PL    0/1:15,13:29:99:1107,0,670
17    695061    rs75658007    G    A    217.29    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.497;DB;DP=37;Dels=0.0;FS=3.33;HRun=0;HaplotypeScore=0.8667;MQ=58.11;MQ0=0;MQRankSum=-0.207;QD=5.87;ReadPosRankSum=-0.939;SNPEFF_AMINO_ACID_CHANGE=V339I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_694774_695749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304478    GT:AD:DP:GQ:PL    0/1:24,13:37:99:247,0,885
17    695062    rs80220493    T    A    206.67    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=37;Dels=0.0;FS=1.531;HRun=0;HaplotypeScore=0.8667;MQ=57.46;MQ0=0;MQRankSum=0.116;QD=5.59;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=V339D;SNPEFF_CODON_CHANGE=gTt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_694774_695749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304478    GT:AD:DP:GQ:PL    0/1:26,11:37:99:237,0,912
17    704480    rs570710    C    A    38.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.68;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336868    GT:AD:DP:GQ:PL    0/1:3,2:5:68.42:68,0,95
17    706862    rs598974    G    C    574.20    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=1.427;DB;DP=28;Dels=0.0;FS=6.3;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.935;QD=20.51;ReadPosRankSum=0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336868    GT:AD:DP:GQ:PL    0/1:9,19:28:99:604,0,257
17    707174    rs610542    C    G    275.57    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.071;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.62;MQ0=0;MQRankSum=-0.071;QD=19.68;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336868    GT:AD:DP:GQ:PL    0/1:4,10:14:99:306,0,126
17    725356    rs654728    T    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336868    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    725433    rs503779    C    T    75.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9577;MQ=55.26;MQ0=0;MQRankSum=0.406;QD=12.61;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336868    GT:AD:DP:GQ:PL    0/1:3,3:6:87.04:106,0,87
17    729712    rs12603534    T    C    580.99    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.29;DB;DP=41;Dels=0.0;FS=5.04;HRun=1;HaplotypeScore=0.734;MQ=59.44;MQ0=0;MQRankSum=0.464;QD=14.17;ReadPosRankSum=1.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336868    GT:AD:DP:GQ:PL    0/1:21,20:41:99:611,0,624
17    902322    rs2586238    A    G    146.04    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=16.23;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:4,5:9:99:176,0,137
17    910401    rs2586305    G    A    313.48    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=21;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.6651;MQ=54.23;MQ0=1;MQRankSum=-0.124;QD=14.93;ReadPosRankSum=-1.693;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382259    GT:AD:DP:GQ:PL    0/1:8,13:21:99:343,0,212
17    910636    rs2586304    A    G    97.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=9.78;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382259    GT:AD:DP:GQ:PL    0/1:6,4:10:99:128,0,195
17    912768    rs333653    G    A    35.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-0.736;QD=8.77;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382259    GT:AD:DP:GQ:PL    0/1:2,2:4:20.60:65,0,21
17    953456    rs2257540    C    T    512.99    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=3.733;DB;DP=28;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.805;QD=18.32;ReadPosRankSum=0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:13,15:28:99:543,0,291
17    954003    rs11653072    C    G    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.79;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,107
17    959515    rs2304958    A    G    71.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=11.96;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,104
17    960221    rs2304959    C    G    1295.56    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=75;Dels=0.0;FS=6.102;HRun=0;HaplotypeScore=1.6483;MQ=60.0;MQ0=0;MQRankSum=0.756;QD=17.27;ReadPosRankSum=0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:31,44:75:99:1326,0,1035
17    960510    rs2440044    C    T    165.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.04;MQ0=0;QD=27.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
17    961149    rs9912632    T    A    502.63    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.54;DB;DP=35;Dels=0.0;FS=7.272;HRun=3;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.149;QD=14.36;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:16,19:35:99:533,0,542
17    961304    rs2260448    C    A    1090.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1124,84,0
17    962146    rs118109021    C    T    538.77    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.62;QD=16.84;ReadPosRankSum=-0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:13,19:32:99:569,0,315
17    970251    rs2258097    T    C    74.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
17    970413    rs2262150    C    T    590.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_AMINO_ACID_CHANGE=E144;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_970317_970482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536794    GT:AD:DP:GQ:PL    1/1:0,19:19:48.11:623,48,0
17    970601    rs2262155    A    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    973137    rs71358531    G    A    36.65    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.6266;MQ=38.13;MQ0=0;MQRankSum=0.736;QD=4.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:2,3:9:31.62:67,0,32
17    975830    rs77792616    G    A    34.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=5.68;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:3,3:6:64.07:64,0,110
17    976711    rs2258893    T    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    986742    rs2257468    A    G    409.62    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.447;DB;DP=45;Dels=0.0;FS=1.684;HRun=0;HaplotypeScore=2.6018;MQ=59.49;MQ0=0;MQRankSum=0.036;QD=9.1;ReadPosRankSum=-1.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:26,19:45:99:440,0,795
17    994735    rs2289632    G    T    40.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:2,2:4:46.09:71,0,46
17    1004108    rs12942046    G    A    98.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.26;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291107    GT:AD:DP:GQ:PL    0/1:4,4:8:99:128,0,135
17    1183133    rs12453182    T    C    75.61    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_1182957_1183682;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUSC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333813    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:106,0,67
17    1183354    rs6502774    T    C    1332.52    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.376;DB;DP=95;Dels=0.0;FS=1.776;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=14.03;ReadPosRankSum=-0.371;SNPEFF_AMINO_ACID_CHANGE=F20S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1182957_1183682;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUSC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333813    GT:AD:DP:GQ:PL    0/1:45,50:95:99:1363,0,1384
17    1183464    rs6502776    A    G    1440.89    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.437;DB;DP=92;Dels=0.0;FS=0.843;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=2.437;QD=15.66;ReadPosRankSum=-0.06;SNPEFF_AMINO_ACID_CHANGE=S57G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1182957_1183682;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUSC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333813    GT:AD:DP:GQ:PL    0/1:43,49:92:99:1471,0,1293
17    1198628    rs902965    A    G    224.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.207;DB;DP=31;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.2426;MQ=58.5;MQ0=0;MQRankSum=-1.588;QD=7.24;ReadPosRankSum=0.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUSC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333813    GT:AD:DP:GQ:PL    0/1:18,12:31:99:254,0,646
17    1264611    rs148149371    TA    T    143.23    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=0.564;DB;DP=29;FS=0.0;HRun=16;HaplotypeScore=156.0326;IndelType=D;MQ=57.09;MQ0=0;MQRankSum=0.141;QD=4.94;ReadPosRankSum=-0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469398    GT:AD:DP:GQ:PL    0/1:14,13:29:88.08:182,0,88
17    1265064    rs3752826    A    C    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489287    GT:AD:DP:GQ:PL    1/1:0,4:4:6:66,6,0
17    1265285    rs34137556    C    T    311.21    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.904;DB;DP=23;Dels=0.0;FS=7.384;HRun=3;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=2.561;QD=13.53;ReadPosRankSum=1.313;SNPEFF_AMINO_ACID_CHANGE=K72;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1265196_1265302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414131    GT:AD:DP:GQ:PL    0/1:12,11:23:99:341,0,285
17    1268444    rs140211249    GA    G    142.05    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;FS=0.0;HRun=7;HaplotypeScore=27.8777;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=1.034;QD=12.91;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264335    GT:AD:DP:GQ:PL    0/1:4,7:11:99:181,0,118
17    1268569    rs7212894    G    A    92.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264335    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
17    1359363    rs2229075    T    G    602.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=R17;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1359171_1359552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300574    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:636,51,0
17    1370459    rs2302459    T    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535421    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
17    1370720    rs2302457    C    T    168    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.452;QD=12.0;ReadPosRankSum=0.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535421    GT:AD:DP:GQ:PL    0/1:8,6:14:99:198,0,276
17    1371123    rs8072859    T    C    378.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535421    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:411,30,0
17    1371473    rs8079811    C    G    293.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:327,27,0
17    1371818    rs8080389    C    T    571.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:604,45,0
17    1371996    rs2286870    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    1372987    rs9303175    T    G    91.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    1373518    rs9905106    T    C    221.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.73;SNPEFF_AMINO_ACID_CHANGE=Q791R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1373469_1373628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361007    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:255,21,0
17    1375362    rs144446489    GC    G    963.54    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.856;DB;DP=57;FS=5.994;HRun=2;HaplotypeScore=199.9777;IndelType=D;MQ=59.55;MQ0=0;MQRankSum=0.879;QD=16.9;ReadPosRankSum=-0.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    0/1:25,32:57:99:1003,0,892
17    1377878    rs2286871    T    C    2409.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.48;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2442,199,0
17    1377884    rs2286872    C    T    1189.67    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.434;DB;DP=84;Dels=0.0;FS=3.087;HRun=0;HaplotypeScore=1.5253;MQ=57.54;MQ0=0;MQRankSum=2.244;QD=14.16;ReadPosRankSum=0.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    0/1:38,46:84:99:1220,0,1102
17    1377943    rs2286873    A    G    1099.82    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.689;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=1.002;QD=11.22;ReadPosRankSum=1.754;SNPEFF_AMINO_ACID_CHANGE=F551;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1377904_1377984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361007    GT:AD:DP:GQ:PL    0/1:52,46:98:99:1130,0,1506
17    1380955    rs2286875    G    T    55.52    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.55;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    0/1:7,3:10:85.51:86,0,252
17    1381005    rs2286876    T    C    554.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:588,45,0
17    1381521    rs45456691    T    C    314.46    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.275;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.429;QD=13.67;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    0/1:10,13:23:99:344,0,325
17    1381891    rs76826401    G    C    517.71    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.238;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.21;MQ0=0;MQRankSum=1.7;QD=14.79;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359786    GT:AD:DP:GQ:PL    0/1:18,17:35:99:548,0,474
17    1384066    rs4790518    A    G    1095.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=29.61;SNPEFF_AMINO_ACID_CHANGE=G212;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1384000_1384179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361007    GT:AD:DP:GQ:PL    1/1:0,37:37:90.24:1128,90,0
17    1395682    rs12941864    C    T    154.68    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=19.34;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320345    GT:AD:DP:GQ:PL    0/1:2,6:8:21.26:185,0,21
17    1401613    rs1879488    A    C    124.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320345    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
17    1410259    rs2240999    C    G    79.15    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=11;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=7.2;ReadPosRankSum=-1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445774    GT:AD:DP:GQ:PL    0/1:6,5:11:99:109,0,180
17    1410393    rs34308535    A    C    54.84    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=4.99;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445774    GT:AD:DP:GQ:PL    0/1:5,6:11:84.84:85,0,148
17    1410441    rs35417891    C    T    36.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.21;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445774    GT:AD:DP:GQ:PL    0/1:3,2:5:66.03:66,0,100
17    1411158    rs74251973    T    G    38.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.58;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445774    GT:AD:DP:GQ:PL    0/1:2,2:4:63.55:68,0,64
17    1411597    rs2286868    C    T    496.68    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=1.784;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=9.55;ReadPosRankSum=1.508;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445774    GT:AD:DP:GQ:PL    0/1:33,19:52:99:527,0,1158
17    1412455    rs5818804    GC    G    815.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=2;HaplotypeScore=94.8363;IndelType=D;MQ=57.37;MQ0=0;QD=33.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INPP5K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445774    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:857,66,0
17    1424948    rs2277669    A    G    727.91    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=2.085;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.18;MQ0=0;MQRankSum=0.061;QD=8.56;ReadPosRankSum=0.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313486    GT:AD:DP:GQ:PL    0/1:53,32:85:99:758,0,1652
17    1425064    rs73294784    A    G    208.31    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=57.77;MQ0=0;MQRankSum=-0.253;QD=9.92;ReadPosRankSum=0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313486    GT:AD:DP:GQ:PL    0/1:13,8:21:99:238,0,472
17    1437174    rs2270227    T    C    200.85    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=15.45;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313486    GT:AD:DP:GQ:PL    0/1:6,7:13:99:231,0,209
17    1437334    rs2270229    A    C    2541.30    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.421;DB;DP=203;Dels=0.0;FS=2.98;HRun=1;HaplotypeScore=6.2581;MQ=59.77;MQ0=0;MQRankSum=0.166;QD=12.52;ReadPosRankSum=1.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313486    GT:AD:DP:GQ:PL    0/1:103,99:203:99:2571,0,3186
17    1442349    rs73296927    G    T    146.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=14.6;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313486    GT:AD:DP:GQ:PL    0/1:4,6:10:99:176,0,139
17    1444702    rs2302460    T    C    198.26    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.32;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313486    GT:AD:DP:GQ:PL    0/1:1,6:7:20.69:228,0,21
17    1478712    rs7342891    G    T    54.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=13.72;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412517    GT:AD:DP:GQ:PL    0/1:1,3:4:21.43:85,0,21
17    1479741    rs6502794    A    G    140.98    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=17.62;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301335    GT:AD:DP:GQ:PL    0/1:3,5:8:99:171,0,100
17    1480088    rs7222193    G    A    225.36    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=12;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.734;MQ=58.05;MQ0=0;MQRankSum=-0.731;QD=18.78;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301335    GT:AD:DP:GQ:PL    0/1:4,7:12:52.92:255,0,53
17    1489076    rs72820319    G    A    144.98    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=13;Dels=0.0;FS=3.358;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=11.15;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301335    GT:AD:DP:GQ:PL    0/1:7,6:13:99:175,0,242
17    1489088    rs4790208    C    G    533.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301335    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:566,42,0
17    1494567    rs63598260    G    A    502.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.907;DB;DP=36;Dels=0.0;FS=13.219;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.395;QD=13.96;ReadPosRankSum=1.819;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1494563_1494765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412517    GT:AD:DP:GQ:PL    0/1:18,18:36:99:533,0,503
17    1494919    .    G    A    63.48    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=15.87;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=L223;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1494860_1494993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301335    GT:AD:DP:GQ:PL    0/1:1,3:4:29.74:93,0,30
17    1516480    rs7219369    T    C    897.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301335    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:931,69,0
17    1518576    rs56212206    T    C    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC43A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301335    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
17    1538546    rs4790250    C    T    668.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.66;MQ0=0;QD=27.87;SNPEFF_AMINO_ACID_CHANGE=G581S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1537152_1538911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348987    GT:AD:DP:GQ:PL    1/1:0,24:24:57.14:702,57,0
17    1538628    rs3744644    C    G    836.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=E553D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1537152_1538911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348987    GT:AD:DP:GQ:PL    1/1:0,29:29:78.14:870,78,0
17    1538714    rs61738531    T    G    512.26    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=45;Dels=0.0;FS=2.649;HRun=2;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.967;QD=11.38;ReadPosRankSum=-0.944;SNPEFF_AMINO_ACID_CHANGE=S525R;SNPEFF_CODON_CHANGE=Agc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1537152_1538911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348987    GT:AD:DP:GQ:PL    0/1:24,21:45:99:542,0,721
17    1542153    rs2272012    G    A    850.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_AMINO_ACID_CHANGE=G351;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1542100_1542220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348987    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:884,69,0
17    1542190    rs2272011    G    A    809.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_AMINO_ACID_CHANGE=A339V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1542100_1542220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348987    GT:AD:DP:GQ:PL    1/1:0,25:25:66.17:843,66,0
17    1543182    rs144103456    C    T    757.12    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.526;DB;DP=57;Dels=0.0;FS=2.207;HRun=0;HaplotypeScore=2.1992;MQ=60.0;MQ0=0;MQRankSum=0.855;QD=13.28;ReadPosRankSum=-1.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263071    GT:AD:DP:GQ:PL    0/1:30,27:57:99:787,0,762
17    1550106    rs2293067    C    T    163.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304992    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
17    1563933    rs80348743    C    T    630.64    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=71;Dels=0.0;FS=9.608;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-0.161;QD=8.88;ReadPosRankSum=-0.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304992    GT:AD:DP:GQ:PL    0/1:47,23:71:99:661,0,1430
17    1577384    rs7223681    C    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    1587639    rs7223663    T    C    212.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304992    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
17    1611433    rs4790809    A    G    169.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=S142;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1611064_1611516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLCD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330676    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
17    1612777    rs11078594    G    C    392.72    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.069;DB;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.2;MQ0=0;MQRankSum=-0.474;QD=7.85;ReadPosRankSum=-1.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330676    GT:AD:DP:GQ:PL    0/1:28,20:50:99:423,0,759
17    1630584    rs7221974    A    G    37.95    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=4.74;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=L777;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1628254_1631920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409644    GT:AD:DP:GQ:PL    0/1:5,3:8:67.94:68,0,144
17    1633868    rs62090047    C    T    34.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.74;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309182    GT:AD:DP:GQ:PL    0/1:2,2:4:61.63:65,0,62
17    1635614    rs62090048    T    C    500.88    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.131;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.12;MQ0=0;MQRankSum=-0.044;QD=8.08;ReadPosRankSum=0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455636    GT:AD:DP:GQ:PL    0/1:34,28:62:99:531,0,719
17    1636934    rs3809870    A    G    586.87    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.157;DB;DP=59;Dels=0.0;FS=3.41;HRun=0;HaplotypeScore=1.5661;MQ=59.22;MQ0=0;MQRankSum=0.62;QD=9.95;ReadPosRankSum=0.902;SNPEFF_AMINO_ACID_CHANGE=M120V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1636821_1636973;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR81;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418841    GT:AD:DP:GQ:PL    0/1:38,21:59:99:617,0,1165
17    1637074    rs3809871    A    G    391.22    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=32;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.982;QD=12.23;ReadPosRankSum=1.662;SNPEFF_AMINO_ACID_CHANGE=P1581;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1636821_1637510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409644    GT:AD:DP:GQ:PL    0/1:15,17:32:99:421,0,520
17    1637302    rs3809872    A    G    825.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.706;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=1.345;QD=14.24;ReadPosRankSum=-2.46;SNPEFF_AMINO_ACID_CHANGE=L1657;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1636821_1637510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409644    GT:AD:DP:GQ:PL    0/1:29,29:58:99:856,0,964
17    1639458    rs11549259    A    G    397.92    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=35;Dels=0.0;FS=1.475;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=11.37;ReadPosRankSum=-1.208;SNPEFF_AMINO_ACID_CHANGE=T1817;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1639333_1639512;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR81;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409644    GT:AD:DP:GQ:PL    0/1:16,19:35:99:428,0,462
17    1649267    rs7501729    A    G    329.69    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.84;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.129;QD=10.64;ReadPosRankSum=-1.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324015    GT:AD:DP:GQ:PL    0/1:19,12:31:99:360,0,622
17    1651780    rs2277695    A    G    273.39    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.093;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.031;QD=11.89;ReadPosRankSum=-0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423861    GT:AD:DP:GQ:PL    0/1:11,12:23:99:303,0,391
17    1673276    rs1136287    C    T    584.49    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=61;Dels=0.0;FS=2.302;HRun=0;HaplotypeScore=3.8729;MQ=59.24;MQ0=0;MQRankSum=-0.146;QD=9.58;ReadPosRankSum=-0.1;SNPEFF_AMINO_ACID_CHANGE=T72M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1673146_1673344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:35,25:61:99:614,0,931
17    1673405    rs12603825    G    A    169.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=11.31;ReadPosRankSum=-2.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:9,6:15:99:200,0,334
17    1674429    rs8074840    T    C    323.05    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.708;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=58.84;MQ0=0;MQRankSum=1.051;QD=8.08;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=T130;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1674323_1674478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:21,19:40:99:353,0,628
17    1674687    rs4511575    T    C    40.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
17    1675127    rs4274474    C    T    322    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.076;DB;DP=26;Dels=0.0;FS=10.458;HRun=1;HaplotypeScore=1.9985;MQ=60.0;MQ0=0;MQRankSum=1.401;QD=12.38;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:15,11:26:99:352,0,352
17    1675138    rs4274475    C    T    353.47    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.927;DB;DP=27;Dels=0.0;FS=7.707;HRun=0;HaplotypeScore=1.9985;MQ=60.0;MQ0=0;MQRankSum=0.903;QD=13.09;ReadPosRankSum=0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:15,12:27:99:383,0,371
17    1675451    rs5008943    T    C    143.78    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=20.54;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:1,6:7:24.18:174,0,24
17    1678256    rs2269344    G    C    98.97    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=9.0;ReadPosRankSum=1.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:6,5:11:99:129,0,143
17    1679793    rs2071021    A    G    644.91    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.538;DB;DP=52;Dels=0.0;FS=5.949;HRun=2;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;MQRankSum=0.878;QD=12.4;ReadPosRankSum=0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:27,25:52:99:675,0,815
17    1679805    rs2071022    A    G    792.84    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.66;DB;DP=60;Dels=0.0;FS=1.286;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=2.062;QD=13.21;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:28,32:60:99:823,0,867
17    1680002    rs6828    T    C    1048.42    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.986;DB;DP=71;Dels=0.0;FS=4.729;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.132;QD=14.77;ReadPosRankSum=1.938;SNPEFF_AMINO_ACID_CHANGE=Y321;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1679826_1680036;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:35,36:71:99:1078,0,1177
17    1680192    rs11654472    A    T    141.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.14;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,176
17    1680318    rs9889773    A    G    497.49    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=2.027;QD=17.77;ReadPosRankSum=-0.138;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:13,15:28:99:527,0,462
17    1684772    rs7224977    T    C    104.59    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=8.05;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254722    GT:AD:DP:GQ:PL    0/1:8,5:13:99:135,0,259
17    1686410    rs9902398    T    C    560.36    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=3.348;DB;DP=54;Dels=0.0;FS=3.978;HRun=0;HaplotypeScore=1.9787;MQ=60.0;MQ0=0;MQRankSum=-0.135;QD=10.38;ReadPosRankSum=0.713;SNPEFF_AMINO_ACID_CHANGE=Y727C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1686329_1686452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:31,23:54:99:590,0,982
17    1686563    rs11078639    C    T    311.25    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.287;DB;DP=26;Dels=0.0;FS=3.892;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=11.97;ReadPosRankSum=-0.958;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:14,12:26:99:341,0,393
17    1687796    rs3815612    A    G    511.92    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.926;DB;DP=34;Dels=0.0;FS=1.845;HRun=1;HaplotypeScore=1.811;MQ=60.0;MQ0=0;MQRankSum=1.662;QD=15.06;ReadPosRankSum=-1.511;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:15,19:34:99:542,0,491
17    1687900    rs9893644    C    T    302.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:335,24,0
17    1690303    rs72056130    AAG    A    303.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.838;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=78.9439;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=12.15;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:15,10:25:99:343,0,516
17    1703543    rs3809875    G    C    1805.10    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.51;DB;DP=97;Dels=0.0;FS=2.826;HRun=0;HaplotypeScore=0.9916;MQ=59.81;MQ0=0;MQRankSum=0.058;QD=18.61;ReadPosRankSum=0.799;SNPEFF_AMINO_ACID_CHANGE=P382R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1703151_1704318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:37,60:97:99:1835,0,1170
17    1704296    rs7224496    C    A    1894.65    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.355;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.82;MQ0=0;MQRankSum=-0.319;QD=14.8;ReadPosRankSum=1.473;SNPEFF_AMINO_ACID_CHANGE=R131I;SNPEFF_CODON_CHANGE=aGa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1703151_1704318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:65,63:128:99:1925,0,1971
17    1704398    rs34564270    C    A    230.08    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.058;QD=10.46;ReadPosRankSum=2.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:14,8:22:99:260,0,499
17    1707762    rs8067685    A    G    68.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
17    1707893    rs8072508    T    A    428.04    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.037;DB;DP=31;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=13.81;ReadPosRankSum=-0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    0/1:16,15:31:99:458,0,427
17    1715435    rs7503422    G    A    3095.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3128,238,0
17    1731268    rs8067660    T    C    663.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_AMINO_ACID_CHANGE=E7;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1731155_1731300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMYD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305513    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:696,51,0
17    1733399    rs5030749    A    G    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_AMINO_ACID_CHANGE=Q4;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1733266_1733420;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    1748028    rs4790827    A    G    318.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:352,27,0
17    1756351    rs2287321    A    G    201.29    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.674;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.28;QD=10.59;ReadPosRankSum=-1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    0/1:11,8:19:99:231,0,394
17    1756637    rs2287320    G    A    88.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    1761431    rs3809874    T    C    1481.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=34.52;MQ0=14;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1514,132,0
17    1761446    rs11656253    G    A    394.43    MQFilter40    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=4.223;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=35.25;MQ0=14;MQRankSum=-4.383;QD=5.72;ReadPosRankSum=0.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    0/1:35,34:69:99:424,0,917
17    1782952    rs5030755    A    G    1335.93    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.91;DB;DP=118;Dels=0.0;FS=0.705;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.357;QD=11.32;ReadPosRankSum=-0.097;SNPEFF_AMINO_ACID_CHANGE=T351A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1782854_1782993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    0/1:64,54:118:99:1366,0,1868
17    1783812    rs2277694    T    C    566.44    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.923;QD=14.16;ReadPosRankSum=-0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    0/1:19,21:40:99:596,0,588
17    1787020    rs17338990    T    C    722.24    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=3.408;DB;DP=51;Dels=0.0;FS=7.17;HRun=1;HaplotypeScore=0.5784;MQ=59.55;MQ0=0;MQRankSum=1.097;QD=14.16;ReadPosRankSum=-0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    0/1:25,26:51:99:752,0,758
17    1792174    rs2270412    G    A    420.52    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.247;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=13.14;ReadPosRankSum=-1.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    0/1:18,14:32:99:451,0,609
17    1795299    .    C    A    174.49    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1445;MQ=58.63;MQ0=0;MQRankSum=0.471;QD=10.26;ReadPosRankSum=1.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    0/1:9,8:17:99:204,0,164
17    1795389    rs6503049    C    T    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254719    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
17    1839674    rs9902457    G    C    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4RL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331238    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    1840468    rs9903800    C    T    536.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=29.81;SNPEFF_AMINO_ACID_CHANGE=A216;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1837978_1841102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN4RL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331238    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:570,42,0
17    1936755    rs72809541    T    C    687.21    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.112;QD=16.36;ReadPosRankSum=-0.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263083    GT:AD:DP:GQ:PL    0/1:19,23:42:99:717,0,505
17    1942861    rs7207466    C    T    159.55    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=46.34;MQ0=0;MQRankSum=-0.731;QD=15.96;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263083    GT:AD:DP:GQ:PL    0/1:3,7:10:95.44:190,0,95
17    1943888    rs2236375    T    C    742.22    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.02;DB;DP=57;Dels=0.0;FS=1.26;HRun=2;HaplotypeScore=0.9734;MQ=59.6;MQ0=0;MQRankSum=-0.471;QD=13.02;ReadPosRankSum=-1.014;SNPEFF_AMINO_ACID_CHANGE=P337;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_1943799_1943899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263083    GT:AD:DP:GQ:PL    0/1:29,28:57:99:772,0,936
17    1945744    rs55801908    C    T    126.53    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=9.73;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263083    GT:AD:DP:GQ:PL    0/1:8,5:13:99:157,0,283
17    1946503    rs1051322    C    G    302.85    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=23.3;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OVCA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263084    GT:AD:DP:GQ:PL    0/1:4,9:13:99:333,0,128
17    1959822    rs9901806    C    T    72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.0;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    0/1:3,3:6:73.48:102,0,73
17    1968983    rs2232486    T    C    259.59    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=20;Dels=0.0;FS=2.473;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=12.98;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    0/1:11,9:20:99:290,0,354
17    1985050    rs8076897    T    C    1156.89    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.081;DB;DP=75;Dels=0.0;FS=6.441;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=1.021;QD=15.43;ReadPosRankSum=0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    0/1:31,44:75:99:1187,0,912
17    2139654    rs2273984    C    G    358.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:391,30,0
17    2195933    rs3215741    GA    G    2147.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.0;HRun=6;HaplotypeScore=216.5878;IndelType=D;MQ=59.35;MQ0=0;QD=29.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    1/1:3,70:73:99:2190,205,0
17    2196088    rs216206    C    T    665.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:698,51,0
17    2196150    rs216205    C    T    1099.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    1/1:0,36:36:90.25:1132,90,0
17    2200434    rs170043    A    C    666.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:700,51,0
17    2202178    rs72819599    G    C    1975.09    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.523;DB;DP=152;Dels=0.0;FS=18.026;HRun=2;HaplotypeScore=4.4485;MQ=57.84;MQ0=0;MQRankSum=1.175;QD=12.99;ReadPosRankSum=0.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263073    GT:AD:DP:GQ:PL    0/1:85,66:152:99:2005,0,2421
17    2202943    rs216196    T    C    751.97    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=1.093;QD=17.49;ReadPosRankSum=-0.565;SNPEFF_AMINO_ACID_CHANGE=S337;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2202200_2203958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544865    GT:AD:DP:GQ:PL    0/1:16,27:43:99:782,0,527
17    2203025    rs1885987    T    G    792.76    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.058;DB;DP=76;Dels=0.0;FS=10.82;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.765;QD=10.43;ReadPosRankSum=-0.377;SNPEFF_AMINO_ACID_CHANGE=N310T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2202200_2203958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544865    GT:AD:DP:GQ:PL    0/1:43,33:76:99:823,0,1318
17    2203167    rs216195    T    G    841.86    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.57;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.24;MQ=60.0;MQ0=0;MQRankSum=1.006;QD=13.58;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=K263Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2202200_2203958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544865    GT:AD:DP:GQ:PL    0/1:33,29:62:99:872,0,1049
17    2203175    rs1885986    C    G    892.64    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=2.921;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5283;MQ=60.0;MQ0=0;MQRankSum=0.328;QD=15.94;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=R260P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2202200_2203958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544865    GT:AD:DP:GQ:PL    0/1:27,29:56:99:923,0,796
17    2203348    rs216194    T    C    2330.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=59.35;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=P202;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2202200_2203958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544865    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2364,190,0
17    2203453    rs216193    A    G    7982.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7876;MQ=59.63;MQ0=0;QD=31.93;SNPEFF_AMINO_ACID_CHANGE=A167;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2202200_2203958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544865    GT:AD:DP:GQ:PL    1/1:0,250:250:99:7982,629,0
17    2222325    rs8081273    C    T    224.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.582;QD=11.24;ReadPosRankSum=0.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301364    GT:AD:DP:GQ:PL    0/1:12,8:20:99:255,0,408
17    2227655    rs35343613    G    T    562.37    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=1.73;DB;DP=51;Dels=0.0;FS=4.108;HRun=1;HaplotypeScore=1.57;MQ=59.55;MQ0=0;MQRankSum=-0.491;QD=11.03;ReadPosRankSum=-0.491;SNPEFF_AMINO_ACID_CHANGE=H750Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2225992_2227668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301364    GT:AD:DP:GQ:PL    0/1:29,22:51:99:592,0,960
17    2234005    rs2236376    C    T    48.62    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=6.95;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545727    GT:AD:DP:GQ:PL    0/1:4,3:7:78.61:79,0,140
17    2236404    rs2281726    T    C    495.99    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.624;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.8;MQ0=0;MQRankSum=0.642;QD=15.03;ReadPosRankSum=-0.227;SNPEFF_AMINO_ACID_CHANGE=S386G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2236255_2236418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301364    GT:AD:DP:GQ:PL    0/1:16,17:33:99:526,0,534
17    2238741    rs71978672    T    TAA    283.72    PASS    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=0.313;DB;DP=64;FS=5.076;HRun=18;HaplotypeScore=571.5183;IndelType=I;MQ=46.48;MQ0=0;MQRankSum=-0.157;QD=4.43;ReadPosRankSum=-2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301364    GT:AD:DP:GQ:PL    0/1:48,6:64:24.86:323,0,25
17    2264774    rs2429905    C    T    123.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
17    2264794    rs2447102    G    A    158.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
17    2265113    rs2429906    C    A    274.75    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.458;QD=12.49;ReadPosRankSum=-1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:10,12:22:99:305,0,322
17    2266508    .    C    T    40.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:2,2:4:56.59:70,0,57
17    2266709    rs2003969    T    C    31.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.21;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:4,2:6:61.26:61,0,149
17    2266799    rs745400    G    A    47.68    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.377;QD=4.33;ReadPosRankSum=0.978;SNPEFF_AMINO_ACID_CHANGE=R238K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2266759_2266893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:8,3:11:77.67:78,0,279
17    2266812    rs2003968    T    C    79.15    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=7.2;ReadPosRankSum=-0.896;SNPEFF_AMINO_ACID_CHANGE=C242;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2266759_2266893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:7,4:11:99:109,0,208
17    2268139    rs2447099    G    C    513.40    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.882;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.155;QD=16.56;ReadPosRankSum=0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:13,18:31:99:543,0,367
17    2268311    rs2248821    G    A    430.71    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=14.85;ReadPosRankSum=-1.74;SNPEFF_AMINO_ACID_CHANGE=R374Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2268191_2268351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:12,17:29:99:461,0,336
17    2270777    rs2429910    T    C    128.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
17    2278609    rs2252909    C    T    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
17    2278644    rs2252910    C    T    33.74    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.736;QD=6.75;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:1,4:5:22.52:64,0,23
17    2279621    rs2429916    A    G    101.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=11.32;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    0/1:3,6:9:99:132,0,103
17    2280934    rs2429917    T    C    155.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268989    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:188,15,0
17    2297477    rs78101376    G    C    222.90    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.44;DB;DP=29;Dels=0.0;FS=16.472;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.317;QD=7.69;ReadPosRankSum=-1.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174618    GT:AD:DP:GQ:PL    0/1:16,13:29:99:253,0,546
17    2297571    rs35367394    G    GCA    292.74    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=82.4373;IndelType=I;MQ=61.88;MQ0=0;MQRankSum=2.358;QD=13.31;ReadPosRankSum=-1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174618    GT:AD:DP:GQ:PL    0/1:13,7:22:99:332,0,172
17    2310332    rs74415860    G    A    956.52    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=2.783;DB;DP=48;Dels=0.0;FS=6.285;HRun=1;HaplotypeScore=0.7887;MQ=59.52;MQ0=0;MQRankSum=-0.021;QD=19.93;ReadPosRankSum=0.78;SNPEFF_AMINO_ACID_CHANGE=T147I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2310279_2310524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006435.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381977    GT:AD:DP:GQ:PL    0/1:19,29:48:99:987,0,600
17    2318550    rs4613098    G    C    1862.35    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=156;Dels=0.0;FS=0.599;HRun=0;HaplotypeScore=3.3945;MQ=59.41;MQ0=0;MQRankSum=-1.464;QD=11.94;ReadPosRankSum=0.74;SNPEFF_AMINO_ACID_CHANGE=F34L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2318482_2318731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006435.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381977    GT:AD:DP:GQ:PL    0/1:87,69:156:99:1892,0,2621
17    2318695    rs4790335    G    A    3668.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9312;MQ=57.63;MQ0=0;QD=33.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263092    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3668,277,0
17    2371000    rs10163513    G    A    899.72    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=5.43;DB;DP=55;Dels=0.0;FS=2.144;HRun=0;HaplotypeScore=2.7327;MQ=59.58;MQ0=0;MQRankSum=-1.625;QD=16.36;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263092    GT:AD:DP:GQ:PL    0/1:28,27:55:99:930,0,762
17    2573652    rs3213696    C    T    1567.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397193    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1601,120,0
17    2585113    rs6628    C    T    345.40    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.04;MQ0=0;MQRankSum=1.637;QD=11.91;ReadPosRankSum=-1.113;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAFAH1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397193    GT:AD:DP:GQ:PL    0/1:14,15:29:99:375,0,425
17    2594218    rs2240730    G    A    32.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.48;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322335    GT:AD:DP:GQ:PL    0/1:4,2:6:62.84:63,0,105
17    2595535    rs2240732    G    T    69.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322335    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:102,9,0
17    2595964    rs2302199    G    A    329.88    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=21;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.599;QD=15.71;ReadPosRankSum=-0.035;SNPEFF_AMINO_ACID_CHANGE=A1074;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2595865_2595990;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435359    GT:AD:DP:GQ:PL    0/1:10,11:21:99:360,0,327
17    2597717    rs12941928    A    G    33.21    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9994;MQ=58.91;MQ0=0;MQRankSum=0.736;QD=5.54;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322335    GT:AD:DP:GQ:PL    0/1:1,5:6:32.20:63,0,32
17    2598627    rs1003398    T    C    2478.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9713;MQ=59.69;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322335    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2511,196,0
17    2598639    rs1003399    C    G    958.97    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.144;DB;DP=72;Dels=0.0;FS=6.44;HRun=1;HaplotypeScore=2.9291;MQ=59.68;MQ0=0;MQRankSum=-0.512;QD=13.32;ReadPosRankSum=-0.926;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322335    GT:AD:DP:GQ:PL    0/1:37,35:72:99:989,0,955
17    2599612    rs2302200    C    G    223.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=12;Dels=0.0;FS=2.632;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.708;QD=18.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322335    GT:AD:DP:GQ:PL    0/1:4,8:12:82.96:254,0,83
17    2604375    rs758417    C    T    150.82    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=18.85;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322335    GT:AD:DP:GQ:PL    0/1:2,6:8:63.81:181,0,64
17    2606715    rs1065479    G    A    243.66    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=24;Dels=0.0;FS=3.834;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.174;QD=10.15;ReadPosRankSum=0.927;SNPEFF_AMINO_ACID_CHANGE=R86;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2606612_2606783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0664;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322335    GT:AD:DP:GQ:PL    0/1:13,11:24:99:274,0,439
17    2703764    rs11869022    C    G    1593.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.05;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1627,132,0
17    2867073    rs56215214    G    A    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    2868935    rs12950923    T    C    824.17    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.12;DB;DP=51;Dels=0.0;FS=4.233;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.763;QD=16.16;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=L179;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2868834_2868937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540393    GT:AD:DP:GQ:PL    0/1:26,25:51:99:854,0,811
17    2883588    rs17762452    C    A    994.95    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=1.904;DB;DP=73;Dels=0.0;FS=1.083;HRun=3;HaplotypeScore=1.6439;MQ=59.37;MQ0=0;MQRankSum=-0.451;QD=13.63;ReadPosRankSum=-1.589;SNPEFF_AMINO_ACID_CHANGE=L183M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2883581_2883659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540393    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1025,0,1131
17    2908816    rs2289648    A    G    887.80    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.69;MQ0=0;MQRankSum=1.072;QD=14.55;ReadPosRankSum=0.687;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    0/1:31,30:61:99:918,0,1009
17    2921637    rs3752045    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    2923545    rs3816273    T    G    39.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.14;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:69,0,33
17    2923597    rs2304981    C    A    116.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.36;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    0/1:2,4:6:61.50:146,0,61
17    2923767    rs2304982    A    G    424.07    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DB;DP=35;Dels=0.0;FS=1.32;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.348;QD=12.12;ReadPosRankSum=2.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    0/1:19,16:35:99:454,0,532
17    2924011    rs4790416    T    C    34.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.82;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    0/1:3,3:6:64.91:65,0,111
17    2929286    rs4072679    A    C    956.81    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.282;DB;DP=62;Dels=0.0;FS=1.046;HRun=1;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;MQRankSum=0.83;QD=15.43;ReadPosRankSum=0.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    0/1:30,32:62:99:987,0,854
17    2929674    rs12941934    T    C    148.15    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=14.81;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=R613;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2929644_2929758;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540393    GT:AD:DP:GQ:PL    0/1:3,7:10:95.71:178,0,96
17    2935591    rs4239039    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAP1GAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254695    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
17    2965855    .    C    T    111.83    MQFilter40    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.49;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.36;MQ0=1;MQRankSum=-0.875;QD=2.73;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:32,9:41:99:142,0,753
17    2965915    .    A    T    159.79    MQFilter40;QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.151;DP=108;Dels=0.0;FS=5.001;HRun=0;HaplotypeScore=0.0;MQ=15.13;MQ0=59;MQRankSum=0.081;QD=1.48;ReadPosRankSum=0.314;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:89,19:108:99:190,0,692
17    2965929    .    G    A    98.37    MQFilter40;QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=3.453;DP=121;Dels=0.0;FS=1.864;HRun=0;HaplotypeScore=0.9916;MQ=13.71;MQ0=72;MQRankSum=0.174;QD=0.81;ReadPosRankSum=-0.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:101,20:121:99:128,0,579
17    2965945    rs182442561    C    T    71.64    MQFilter40;QDFilter2    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=0.497;DB;DP=144;Dels=0.0;FS=4.158;HRun=0;HaplotypeScore=0.9916;MQ=11.99;MQ0=93;MQRankSum=0.497;QD=0.5;ReadPosRankSum=1.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:123,21:144:99:102,0,550
17    2965978    .    A    G    114.79    MQFilter40;QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DP=197;Dels=0.0;FS=6.196;HRun=1;HaplotypeScore=0.9983;MQ=11.46;MQ0=126;MQRankSum=1.308;QD=0.58;ReadPosRankSum=0.253;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:167,30:197:99:145,0,578
17    2966032    .    C    G    251.74    MQFilter40;QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.786;DP=224;Dels=0.0;FS=2.867;HRun=1;HaplotypeScore=0.9578;MQ=13.94;MQ0=121;MQRankSum=2.197;QD=1.12;ReadPosRankSum=0.455;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:180,43:224:99:282,0,1012
17    2966173    rs61752193    G    C    455.09    MQFilter40    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.151;DB;DP=90;Dels=0.0;FS=12.887;HRun=0;HaplotypeScore=0.0;MQ=37.08;MQ0=0;MQRankSum=0.804;QD=5.06;ReadPosRankSum=0.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:68,22:90:99:485,0,1902
17    2966191    rs61752194    G    A    343.87    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=77;Dels=0.0;FS=6.556;HRun=2;HaplotypeScore=0.0;MQ=40.5;MQ0=0;MQRankSum=-0.018;QD=4.47;ReadPosRankSum=1.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:59,18:77:99:374,0,1773
17    2966273    rs2676567    G    A    264.98    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.929;DB;DP=64;Dels=0.0;FS=6.388;HRun=0;HaplotypeScore=1.4538;MQ=44.45;MQ0=0;MQRankSum=-0.46;QD=4.14;ReadPosRankSum=-0.169;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:48,16:64:99:295,0,1627
17    2966308    rs2855605    C    T    327.62    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=1.582;DB;DP=61;Dels=0.0;FS=13.922;HRun=0;HaplotypeScore=3.5444;MQ=45.49;MQ0=0;MQRankSum=0.126;QD=5.37;ReadPosRankSum=-0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR1D5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333466    GT:AD:DP:GQ:PL    0/1:44,17:61:99:358,0,1203
17    2996173    rs140099014    C    G    1269.56    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=0.516;DB;DP=117;Dels=0.0;FS=4.783;HRun=0;HaplotypeScore=0.8941;MQ=49.66;MQ0=2;MQRankSum=-7.48;QD=10.85;ReadPosRankSum=-2.064;SNPEFF_AMINO_ACID_CHANGE=V40L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_2995352_2996290;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331459    GT:AD:DP:GQ:PL    0/1:59,58:117:99:1300,0,1809
17    3100827    rs2241093    T    C    1850.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.165;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.157;QD=33.65;ReadPosRankSum=-0.094;SNPEFF_AMINO_ACID_CHANGE=N5;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3100813_3101742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381951    GT:AD:DP:GQ:PL    1/1:1,54:55:99:1884,115,0
17    3101076    rs2241092    G    C    2666.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.42;MQ0=0;QD=33.33;SNPEFF_AMINO_ACID_CHANGE=G88;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3100813_3101742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381951    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2700,208,0
17    3101578    rs2241091    G    T    3480.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_AMINO_ACID_CHANGE=G256C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3100813_3101742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381951    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3480,265,0
17    3101691    rs12150427    G    T    2884.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=W293C;SNPEFF_CODON_CHANGE=tgG/tgT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3100813_3101742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381951    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2918,217,0
17    3119008    rs4325604    T    C    2656.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=59.38;MQ0=0;QD=35.41;SNPEFF_AMINO_ACID_CHANGE=L32;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3118915_3119844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304094    GT:AD:DP:GQ:PL    1/1:1,74:75:99:2689,211,0
17    3119049    rs4374201    C    T    1484.24    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=108;Dels=0.0;FS=10.037;HRun=1;HaplotypeScore=0.9958;MQ=59.57;MQ0=0;MQRankSum=2.036;QD=13.74;ReadPosRankSum=1.3;SNPEFF_AMINO_ACID_CHANGE=I45;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3118915_3119844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304094    GT:AD:DP:GQ:PL    0/1:57,51:108:99:1514,0,1760
17    3119297    rs4375699    G    A    642    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.197;DB;DP=47;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.813;QD=13.66;ReadPosRankSum=0.703;SNPEFF_AMINO_ACID_CHANGE=R128H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3118915_3119844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304094    GT:AD:DP:GQ:PL    0/1:23,24:47:99:672,0,707
17    3132254    rs9904653    C    T    351.23    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-2.138;QD=9.76;ReadPosRankSum=-1.263;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401281    GT:AD:DP:GQ:PL    0/1:22,14:36:99:381,0,568
17    3132362    rs79243485    A    AC    183.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=11.6564;IndelType=I;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC090282.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401281    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:225,15,0
17    3181384    rs769434    C    T    558.49    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=57;Dels=0.0;FS=6.032;HRun=0;HaplotypeScore=2.5508;MQ=59.67;MQ0=0;MQRankSum=-0.162;QD=9.8;ReadPosRankSum=-0.624;SNPEFF_AMINO_ACID_CHANGE=G282;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3181193_3182268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR3A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408891    GT:AD:DP:GQ:PL    0/1:36,21:57:99:588,0,1198
17    3182309    rs2014057    G    T    599.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=43.52;MQ0=0;QD=35.29;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408891    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:633,48,0
17    3182396    rs743610    A    C    110.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=27.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408891    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
17    3195503    rs703903    C    T    2957.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=37.43;SNPEFF_AMINO_ACID_CHANGE=R125Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3194929_3195876;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR3A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323404    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2990,223,0
17    3213448    rs231679    T    C    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR3A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323164    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
17    3214181    rs231678    T    G    3581.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.146;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.79;MQ0=0;MQRankSum=-0.599;QD=33.16;ReadPosRankSum=-1.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR3A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323164    GT:AD:DP:GQ:PL    1/1:1,106:108:99:3581,239,0
17    3214314    rs231677    G    A    917.84    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=0.479;DB;DP=66;Dels=0.0;FS=5.098;HRun=3;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;MQRankSum=0.204;QD=13.91;ReadPosRankSum=0.177;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR3A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323164    GT:AD:DP:GQ:PL    0/1:31,35:66:99:948,0,939
17    3301549    rs150988    G    A    1284.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=45.47;MQ0=7;QD=27.92;SNPEFF_AMINO_ACID_CHANGE=D52;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3300398_3301704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1E1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322608    GT:AD:DP:GQ:PL    1/1:3,43:46:99:1317,102,0
17    3324004    rs146946227    C    T    119    MQFilter40;QDFilter2    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=71;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.8941;MQ=9.81;MQ0=63;MQRankSum=0.956;QD=1.68;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=T48I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3323862_3324827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR3A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291231    GT:AD:DP:GQ:PL    0/1:47,24:71:68.55:149,0,69
17    3324086    rs227788    G    A    179.95    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.51;MQ0=65;QD=2.43;SNPEFF_AMINO_ACID_CHANGE=L75;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3323862_3324827;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR3A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291231    GT:AD:DP:GQ:PL    1/1:30,44:74:21.03:213,21,0
17    3324810    rs227787    A    G    662.31    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=2.395;DB;DP=63;Dels=0.0;FS=3.585;HRun=4;HaplotypeScore=2.0508;MQ=60.0;MQ0=0;MQRankSum=0.541;QD=10.51;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=K317E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3323862_3324827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR3A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291231    GT:AD:DP:GQ:PL    0/1:38,25:63:99:692,0,1155
17    3337057    rs769431    A    G    648.35    MQFilter40    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=26.28;MQ0=25;MQRankSum=0.779;QD=7.81;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=C26R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3336746_3337132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1E2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454364    GT:AD:DP:GQ:PL    0/1:50,33:83:99:678,0,829
17    3343406    rs2257732    G    A    1050.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.306;DB;DP=68;Dels=0.0;FS=1.349;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.601;QD=15.45;ReadPosRankSum=0.742;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268981    GT:AD:DP:GQ:PL    0/1:34,34:68:99:1081,0,1038
17    3343519    rs17822627    T    C    1270.68    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.33;DB;DP=93;Dels=0.0;FS=0.834;HRun=0;HaplotypeScore=1.7465;MQ=59.75;MQ0=0;MQRankSum=1.092;QD=13.66;ReadPosRankSum=-1.171;SNPEFF_AMINO_ACID_CHANGE=E295;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3343308_3343632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355380    GT:AD:DP:GQ:PL    0/1:48,45:93:99:1301,0,1467
17    3352294    rs1488689    A    G    1615.54    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.981;DB;DP=108;Dels=0.0;FS=3.613;HRun=0;HaplotypeScore=2.2429;MQ=59.83;MQ0=0;MQRankSum=-0.447;QD=14.96;ReadPosRankSum=-0.657;SNPEFF_AMINO_ACID_CHANGE=I117T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3352101_3352443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355380    GT:AD:DP:GQ:PL    0/1:48,60:108:99:1646,0,1457
17    3352331    rs1488690    C    T    1721.37    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DB;DP=105;Dels=0.0;FS=3.642;HRun=1;HaplotypeScore=1.5783;MQ=59.64;MQ0=0;MQRankSum=0.584;QD=16.39;ReadPosRankSum=2.451;SNPEFF_AMINO_ACID_CHANGE=V105M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3352101_3352443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355380    GT:AD:DP:GQ:PL    0/1:50,55:105:99:1751,0,1500
17    3352455    rs72094582    C    CAA    660.93    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.389;DB;DP=49;FS=2.258;HRun=9;HaplotypeScore=165.1875;IndelType=I;MQ=57.84;MQ0=0;MQRankSum=-1.155;QD=13.49;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268981    GT:AD:DP:GQ:PL    0/1:31,17:49:99:700,0,524
17    3352494    rs71377602    C    CA    152.20    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=18;FS=0.0;HRun=8;HaplotypeScore=53.1999;IndelType=I;MQ=54.65;MQ0=0;MQRankSum=-2.001;QD=8.46;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268981    GT:AD:DP:GQ:PL    0/1:11,7:18:99:191,0,224
17    3379815    rs9889588    T    C    35.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=5.13;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263080    GT:AD:DP:GQ:PL    0/1:4,3:7:65.93:66,0,146
17    3379842    rs9889604    T    C    30.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.03;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263080    GT:AD:DP:GQ:PL    0/1:4,2:6:60.15:60,0,149
17    3385249    rs1488688    A    C    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263080    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    3397969    rs2279567    G    A    79.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263080    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
17    3402521    rs1552830    C    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541913    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    3417123    rs906418    C    T    686.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.14;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_3416706_3417146;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541913    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:720,54,0
17    3419495    rs6502730    G    A    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
17    3419689    rs8081785    C    T    382.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.306;DB;DP=27;Dels=0.0;FS=2.764;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=0.306;QD=14.16;ReadPosRankSum=-0.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    0/1:9,18:27:99:412,0,229
17    3419690    rs8082339    A    G    659.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=24.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,27:27:63.14:692,63,0
17    3422032    rs7216486    G    A    889.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=D625;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3421870_3422144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430263    GT:AD:DP:GQ:PL    1/1:1,25:26:69.22:923,69,0
17    3422077    rs12946883    G    A    420.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.137;DB;DP=35;Dels=0.0;FS=1.356;HRun=0;HaplotypeScore=4.4371;MQ=59.34;MQ0=0;MQRankSum=-0.723;QD=12.02;ReadPosRankSum=0.344;SNPEFF_AMINO_ACID_CHANGE=S610;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3421870_3422144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430263    GT:AD:DP:GQ:PL    0/1:17,17:35:99:451,0,503
17    3424183    rs8079980    A    G    475.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:508,42,0
17    3424220    rs72634011    A    G    251.86    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=20;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.608;QD=12.59;ReadPosRankSum=-0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    0/1:11,9:20:99:282,0,353
17    3430271    rs11657715    A    G    158.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
17    3433672    rs376793    C    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    3435872    rs373255    A    G    313.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:346,27,0
17    3435935    rs454738    C    A    450.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:483,36,0
17    3436080    rs395357    C    T    693.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=T296;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3435951_3436231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430263    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:726,54,0
17    3446885    rs322937    T    C    3332.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.1567;MQ=59.82;MQ0=0;QD=31.74;SNPEFF_AMINO_ACID_CHANGE=R101G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3446768_3446922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430263    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3332,256,0
17    3447130    rs322936    C    T    40.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
17    3447914    rs1039519    C    T    116.71    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.676;DB;DP=19;Dels=0.0;FS=2.345;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=1.281;QD=6.14;ReadPosRankSum=0.099;SNPEFF_AMINO_ACID_CHANGE=Q74;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3447873_3447959;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430263    GT:AD:DP:GQ:PL    0/1:14,5:19:99:147,0,418
17    3448434    rs9911213    A    G    228.67    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.02;DB;DP=16;Dels=0.0;FS=2.933;HRun=4;HaplotypeScore=0.0;MQ=57.34;MQ0=0;MQRankSum=0.793;QD=14.29;ReadPosRankSum=-1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    0/1:5,11:16:99:259,0,170
17    3457878    rs322966    T    C    153.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
17    3457954    rs76003551    T    TG    196.82    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.799;DB;DP=18;FS=8.392;HRun=7;HaplotypeScore=38.496;IndelType=I;MQ=58.71;MQ0=0;MQRankSum=-0.311;QD=10.93;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    0/1:10,8:18:99:236,0,236
17    3458072    rs322965    T    C    697.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_AMINO_ACID_CHANGE=I25V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3458026_3458146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301365    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:731,57,0
17    3470477    rs4790523    C    A    30.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:61,0,32
17    3474660    rs3826503    G    A    67.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=13.48;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:2,3:5:21.40:97,0,21
17    3475367    rs224548    T    G    728.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:762,57,0
17    3475405    rs224549    C    T    826.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    1/1:0,31:31:63.21:860,63,0
17    3475564    rs224550    C    T    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:121,9,0
17    3480396    rs8078936    C    T    413.89    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.297;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=11.83;ReadPosRankSum=0.542;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:20,14:35:99:444,0,668
17    3480447    rs8065080    T    C    543.44    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=37;Dels=0.0;FS=2.88;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.907;QD=14.69;ReadPosRankSum=-1.003;SNPEFF_AMINO_ACID_CHANGE=I525V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3480420_3480486;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310522    GT:AD:DP:GQ:PL    0/1:16,21:37:99:573,0,514
17    3486702    rs224534    G    A    280.88    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.181;DB;DP=31;Dels=0.0;FS=3.448;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.46;QD=9.06;ReadPosRankSum=0.58;SNPEFF_AMINO_ACID_CHANGE=T409I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3486632_3486724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310522    GT:AD:DP:GQ:PL    0/1:18,13:31:99:311,0,564
17    3489244    rs161394    G    A    129.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.56;DB;DP=21;Dels=0.0;FS=7.605;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.126;QD=6.17;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:14,7:21:99:160,0,481
17    3489249    rs3744686    C    T    360.55    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=19;Dels=0.0;FS=8.318;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.648;QD=18.98;ReadPosRankSum=1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:7,12:19:99:391,0,225
17    3489351    rs74389246    A    C    53.26    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.0;QD=4.1;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:6,7:13:83.26:83,0,140
17    3491258    rs161391    C    T    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
17    3492002    rs161390    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    3492057    rs161389    G    A    103.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.34;MQ0=0;MQRankSum=0.421;QD=12.94;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,114
17    3492120    .    A    AC    410.37    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.598;DP=36;FS=0.0;HRun=0;HaplotypeScore=237.3113;IndelType=I;MQ=56.28;MQ0=0;MQRankSum=2.852;QD=11.4;ReadPosRankSum=2.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:19,17:36:99:449,0,505
17    3492319    rs7220415    C    A    254.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.591;QD=16.97;ReadPosRankSum=1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:6,9:15:99:285,0,194
17    3492353    rs161388    A    G    302.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:336,27,0
17    3492998    rs12936340    G    A    351.27    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=3.002;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7309;MQ=58.17;MQ0=0;MQRankSum=-0.871;QD=12.55;ReadPosRankSum=-0.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:10,16:28:15.13:381,0,15
17    3493200    rs222747    C    G    506.73    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.199;DB;DP=35;Dels=0.0;FS=10.212;HRun=1;HaplotypeScore=0.9999;MQ=59.47;MQ0=0;MQRankSum=-0.669;QD=14.48;ReadPosRankSum=0.741;SNPEFF_AMINO_ACID_CHANGE=M313I;SNPEFF_CODON_CHANGE=atG/atC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3493101_3493399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:17,18:35:99:537,0,497
17    3493533    rs161387    A    G    3051.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.77;MQ0=0;MQRankSum=0.866;QD=30.21;ReadPosRankSum=1.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    1/1:1,99:101:99:3084,241,0
17    3493769    rs7502670    G    A    301.26    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.867;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.206;QD=15.86;ReadPosRankSum=0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:8,11:19:99:331,0,279
17    3494100    rs2277677    G    A    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    3494199    rs3216758    G    GC    125.53    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=20.3718;IndelType=I;MQ=61.34;MQ0=0;MQRankSum=0.322;QD=15.69;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000174621    GT:AD:DP:GQ:PL    0/1:3,5:8:66.59:165,0,67
17    3514028    rs224496    G    C    3600.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=D421E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3511893_3514266;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3600,271,0
17    3518976    rs2660974    A    G    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
17    3519060    rs150854    T    G    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
17    3524848    rs8079419    A    C    368.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:402,30,0
17    3526482    rs367264    T    A    378.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    1/1:0,12:12:36.07:411,36,0
17    3533310    rs161362    T    C    175.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:208,18,0
17    3533412    rs9913319    G    A    402.03    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.243;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.4034;MQ=57.29;MQ0=0;MQRankSum=-0.231;QD=15.46;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    0/1:12,14:26:99:432,0,301
17    3533748    rs161361    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    3533759    rs161360    C    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225519    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    3552038    rs222778    G    A    199.07    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.482;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.847;QD=12.44;ReadPosRankSum=1.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495445    GT:AD:DP:GQ:PL    0/1:9,7:16:99:229,0,295
17    3553526    rs161350    A    G    1632.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_AMINO_ACID_CHANGE=Q95R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3553468_3553813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399306    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1666,138,0
17    3558417    rs459613    C    G    1994.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399306    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2028,157,0
17    3558695    rs457419    A    G    764.09    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.441;DB;DP=57;Dels=0.0;FS=9.483;HRun=3;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.964;QD=13.41;ReadPosRankSum=2.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399306    GT:AD:DP:GQ:PL    0/1:31,25:57:99:794,0,836
17    3558698    rs467277    G    A    601.43    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.728;DB;DP=56;Dels=0.0;FS=5.472;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.602;QD=10.74;ReadPosRankSum=-2.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399306    GT:AD:DP:GQ:PL    0/1:25,29:56:99:631,0,670
17    3561396    rs161400    C    T    1142.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.42;MQ0=0;QD=28.56;SNPEFF_AMINO_ACID_CHANGE=T113I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3561299_3561469;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414524    GT:AD:DP:GQ:PL    1/1:0,40:40:90.25:1176,90,0
17    3563339    rs222753    C    T    232.94    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=11.65;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467663    GT:AD:DP:GQ:PL    0/1:9,11:20:99:263,0,241
17    3563963    rs2873624    C    G    835    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=62;Dels=0.0;FS=3.774;HRun=0;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;MQRankSum=-0.599;QD=13.47;ReadPosRankSum=-1.514;SNPEFF_AMINO_ACID_CHANGE=P272A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3563911_3564331;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441220    GT:AD:DP:GQ:PL    0/1:32,30:62:99:865,0,884
17    3566857    rs11541134    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046640    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    3567461    rs2235107    G    A    489.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000046640    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:523,39,0
17    3568012    rs8278    A    G    1737.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=34.07;SNPEFF_AMINO_ACID_CHANGE=D40;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3567973_3568092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAX1BP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225525    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1771,135,0
17    3577273    rs160587    A    G    65.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.16;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248378    GT:AD:DP:GQ:PL    0/1:2,3:5:69.42:96,0,69
17    3593074    rs220486    A    G    321.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440619    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
17    3593187    rs117455943    C    T    295.77    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=20;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.608;QD=14.79;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440619    GT:AD:DP:GQ:PL    0/1:9,11:20:99:326,0,293
17    3594276    rs5818907    TG    T    638.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=5;HaplotypeScore=70.7313;IndelType=D;MQ=59.94;MQ0=0;QD=29.04;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_3594250_3594321;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000225328    GT:AD:DP:GQ:PL    1/1:1,21:22:60.17:681,60,0
17    3618298    rs1367950    C    T    547.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:580,42,0
17    3619784    rs2737131    A    T    315.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:349,27,0
17    3620138    rs2293881    A    G    725.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:759,57,0
17    3626473    rs138225604    G    C    238.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.06;QD=13.26;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:9,9:18:99:269,0,308
17    3627473    rs9907144    C    T    298.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_AMINO_ACID_CHANGE=R82C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3627211_3630067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    1/1:0,13:13:27.08:331,27,0
17    3627840    rs220462    G    A    534.60    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=40;Dels=0.0;FS=3.497;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.532;QD=13.37;ReadPosRankSum=1.99;SNPEFF_AMINO_ACID_CHANGE=G204D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3627211_3630067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    0/1:21,19:40:99:565,0,527
17    3628212    rs220461    T    C    886.70    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=1.008;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.206;QD=18.87;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=I328T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3627211_3630067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    0/1:19,28:47:99:917,0,578
17    3628362    rs3809806    T    C    1924.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=35.64;SNPEFF_AMINO_ACID_CHANGE=V378A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3627211_3630067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1957,147,0
17    3629698    rs170208    A    G    1021.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1054,78,0
17    3629848    rs9896869    A    G    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    3631118    rs2915558    T    C    74.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=9.34;ReadPosRankSum=-2.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    0/1:4,4:8:99:105,0,141
17    3631241    rs2976230    A    G    340.11    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.293;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.293;QD=11.34;ReadPosRankSum=-1.925;SNPEFF_AMINO_ACID_CHANGE=V1019A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3631213_3631320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:17,13:30:99:370,0,570
17    3631473    rs7219600    C    G    403.46    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.767;DB;DP=42;Dels=0.0;FS=1.47;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.688;QD=9.61;ReadPosRankSum=0.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    0/1:27,15:42:99:433,0,784
17    3631620    rs12943844    G    C    198.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:232,21,0
17    3632592    rs2915555    C    T    31.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    0/1:2,2:4:61.63:62,0,73
17    3632836    rs1716    G    A    921.41    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.128;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8662;MQ=58.96;MQ0=0;MQRankSum=-1.814;QD=17.06;ReadPosRankSum=1.218;SNPEFF_AMINO_ACID_CHANGE=R950W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3632772_3632849;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:22,32:54:99:951,0,665
17    3632952    rs2915554    C    T    213.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.222;QD=15.28;ReadPosRankSum=-1.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325418    GT:AD:DP:GQ:PL    0/1:6,8:14:99:244,0,166
17    3635645    rs170209    A    G    843.17    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.715;DB;DP=65;Dels=0.0;FS=2.329;HRun=1;HaplotypeScore=1.9976;MQ=59.43;MQ0=0;MQRankSum=0.089;QD=12.97;ReadPosRankSum=0.516;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:33,32:65:99:873,0,953
17    3637915    rs220465    C    T    35.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
17    3637953    rs178323    C    T    113.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=22.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:146,12,0
17    3638037    rs184335    C    T    1286.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    1/1:0,41:42:99:1320,108,0
17    3638344    rs9674606    G    A    467.48    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.549;QD=20.33;ReadPosRankSum=0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:8,15:23:99:497,0,240
17    3646977    rs10642081    C    CTT    730.58    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.874;DB;DP=41;FS=0.0;HRun=7;HaplotypeScore=190.804;IndelType=I;MQ=55.23;MQ0=0;MQRankSum=-0.307;QD=17.82;ReadPosRankSum=0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:22,19:41:99:770,0,425
17    3649214    rs1183610    G    A    1026.90    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.373;DB;DP=88;Dels=0.0;FS=0.871;HRun=0;HaplotypeScore=0.9332;MQ=59.53;MQ0=0;MQRankSum=-0.571;QD=11.67;ReadPosRankSum=-1.595;SNPEFF_AMINO_ACID_CHANGE=R721;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3649058_3649221;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:48,40:88:99:1057,0,1452
17    3653959    rs1178563    A    T    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,71
17    3655126    rs149540181    C    T    859.33    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=3.565;DB;DP=59;Dels=0.0;FS=3.551;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=14.56;ReadPosRankSum=-0.588;SNPEFF_AMINO_ACID_CHANGE=G571R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3654944_3655168;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:26,33:59:99:889,0,759
17    3657159    rs2272606    C    T    691.88    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.827;DB;DP=53;Dels=0.0;FS=3.933;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.418;QD=13.05;ReadPosRankSum=0.347;SNPEFF_AMINO_ACID_CHANGE=R482Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3657077_3657219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:27,26:53:99:722,0,776
17    3657175    rs220479    T    C    670.85    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.342;DB;DP=54;Dels=0.0;FS=1.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.199;QD=12.42;ReadPosRankSum=1.878;SNPEFF_AMINO_ACID_CHANGE=I477V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3657077_3657219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:28,26:54:99:701,0,802
17    3660864    rs170213    G    A    587.33    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.518;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4103;MQ=59.38;MQ0=0;MQRankSum=-0.261;QD=15.87;ReadPosRankSum=0.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:16,21:37:99:617,0,558
17    3665160    rs220471    C    G    189.99    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=17.27;ReadPosRankSum=1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGAE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263087    GT:AD:DP:GQ:PL    0/1:4,7:11:48.67:220,0,49
17    3746231    rs115162532    C    T    134.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=14.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158149    GT:AD:DP:GQ:PL    0/1:4,5:9:99:165,0,130
17    3769357    rs2567875    G    A    64.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=8.12;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    0/1:4,4:8:94.92:95,0,109
17    3775916    rs7214864    T    C    359.69    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=25;Dels=0.0;FS=1.619;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=14.39;ReadPosRankSum=-0.192;SNPEFF_AMINO_ACID_CHANGE=P352;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3775848_3775921;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348335    GT:AD:DP:GQ:PL    0/1:11,14:25:99:390,0,333
17    3776555    rs34231122    T    C    446.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.744;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.24;QD=31.88;ReadPosRankSum=-0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    1/1:1,13:14:0.38:475,0,0
17    3776867    rs9904678    C    T    234.76    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.893;QD=13.81;ReadPosRankSum=0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    0/1:9,8:17:99:265,0,225
17    3776976    rs4790546    A    G    78.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:111,9,0
17    3786802    rs737360    T    C    293.54    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=11.74;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    0/1:13,12:25:99:324,0,408
17    3786804    rs737361    C    G    338.37    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7234;MQ=60.0;MQ0=0;MQRankSum=-0.19;QD=13.53;ReadPosRankSum=1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    0/1:12,13:25:99:368,0,378
17    3786907    rs758642    G    A    172.10    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=2.632;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=15.65;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    0/1:5,6:11:99:202,0,169
17    3786994    rs72825475    A    T    61.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=12.21;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    0/1:2,3:5:67.62:91,0,68
17    3787593    rs8082046    G    A    994.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.882;DB;DP=74;Dels=0.0;FS=1.093;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.359;QD=13.45;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    0/1:37,37:74:99:1025,0,960
17    3793843    rs11657386    T    C    554.09    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.05;DB;DP=33;Dels=0.0;FS=8.034;HRun=2;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.203;QD=16.79;ReadPosRankSum=-0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAMKK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158166    GT:AD:DP:GQ:PL    0/1:13,20:33:99:584,0,385
17    3806794    rs2074990    C    G    341.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225538    GT:AD:DP:GQ:PL    1/1:0,13:13:30.07:375,30,0
17    3807044    rs740794    T    C    181.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225538    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:214,18,0
17    3808032    rs2074989    A    G    66.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225538    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
17    3808497    rs12449598    A    G    687.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225538    GT:AD:DP:GQ:PL    1/1:0,28:28:69.09:720,69,0
17    3808498    rs68085968    A    C    694.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225538    GT:AD:DP:GQ:PL    1/1:0,28:28:69.09:727,69,0
17    3808713    rs2074988    T    C    406.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225538    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:440,36,0
17    3828086    rs1043246    C    G    126.25    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.098;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.439;QD=7.43;ReadPosRankSum=-1.122;SNPEFF_AMINO_ACID_CHANGE=G216R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3827169_3828095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397039    GT:AD:DP:GQ:PL    0/1:10,7:17:99:156,0,289
17    3828702    rs887387    T    C    532.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_AMINO_ACID_CHANGE=R1034;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3827169_3828735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352011    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:566,42,0
17    3828822    rs1076902    C    T    126.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=25.23;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:159,12,0
17    3831240    rs753960    C    T    374.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=20;Dels=0.0;FS=2.452;HRun=0;HaplotypeScore=5.799;MQ=58.84;MQ0=0;MQRankSum=0.515;QD=18.73;ReadPosRankSum=-0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:8,12:20:99:405,0,154
17    3833740    rs10153291    G    A    114.58    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=14;Dels=0.0;FS=5.756;HRun=0;HaplotypeScore=0.6651;MQ=54.85;MQ0=0;MQRankSum=-0.133;QD=8.18;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:9,5:14:99:145,0,230
17    3833972    rs35443604    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    3838717    rs8068346    T    C    81.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:113,9,0
17    3838757    rs8068362    T    C    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,71
17    3839685    rs1062683    G    A    1012.05    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.108;DB;DP=77;Dels=0.0;FS=4.67;HRun=0;HaplotypeScore=3.5764;MQ=59.7;MQ0=0;MQRankSum=-0.022;QD=13.14;ReadPosRankSum=-0.217;SNPEFF_AMINO_ACID_CHANGE=D800;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3839561_3839763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:39,37:77:99:1042,0,997
17    3839829    rs17846891    C    T    308.78    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.579;QD=14.7;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:9,12:21:99:339,0,257
17    3839874    rs35334668    A    G    203.38    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=18.49;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:4,7:11:78.40:233,0,78
17    3840928    rs3179783    A    G    143.88    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.626;DB;DP=18;Dels=0.0;FS=4.868;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.992;QD=7.99;ReadPosRankSum=0.543;SNPEFF_AMINO_ACID_CHANGE=T701;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3840710_3840930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:11,7:18:99:174,0,375
17    3844671    rs55858476    G    A    628.52    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.854;DB;DP=50;Dels=0.0;FS=1.154;HRun=1;HaplotypeScore=1.8332;MQ=59.07;MQ0=0;MQRankSum=0.204;QD=12.57;ReadPosRankSum=-0.476;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:26,24:50:99:659,0,797
17    3844985    rs17846890    A    C    209.99    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=19.09;ReadPosRankSum=0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:2,9:11:54.39:240,0,54
17    3845927    rs17846889    A    G    150.18    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=17;Dels=0.0;FS=1.987;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=8.83;ReadPosRankSum=-1.203;SNPEFF_AMINO_ACID_CHANGE=T506;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3845900_3846025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:9,8:17:99:180,0,290
17    3846565    rs72400226    CA    C    223.93    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.011;DB;DP=48;FS=13.041;HRun=15;HaplotypeScore=261.513;IndelType=D;MQ=57.56;MQ0=0;MQRankSum=1.756;QD=4.67;ReadPosRankSum=1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:26,17:48:99:263,0,434
17    3846675    rs71366582    C    T    1461.91    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.563;DB;DP=91;Dels=0.0;FS=0.84;HRun=0;HaplotypeScore=1.7621;MQ=58.98;MQ0=0;MQRankSum=0.353;QD=16.06;ReadPosRankSum=-0.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:40,51:91:99:1492,0,1229
17    3846802    rs758641    A    G    914.10    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.575;DB;DP=75;Dels=0.0;FS=3.226;HRun=0;HaplotypeScore=0.6651;MQ=59.28;MQ0=0;MQRankSum=0.355;QD=12.19;ReadPosRankSum=1.384;SNPEFF_AMINO_ACID_CHANGE=Y434;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3846685_3846816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:39,36:75:99:944,0,1053
17    3846891    rs146621763    TG    T    404.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=90.2739;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=1.264;QD=22.47;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:6,12:18:99:443,0,234
17    3846899    rs757611    C    A    378.11    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.02;QD=23.63;ReadPosRankSum=-0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:5,11:16:99:408,0,156
17    3848013    rs1800911    A    C    122.93    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=15.37;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=A424;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3847998_3848100;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:1,7:8:21.27:153,0,21
17    3856615    rs1800915    A    G    746.26    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.104;DB;DP=62;Dels=0.0;FS=1.122;HRun=2;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=12.04;ReadPosRankSum=0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309890    GT:AD:DP:GQ:PL    0/1:31,30:62:99:776,0,1026
17    3910125    rs62072392    A    G    78.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.79;ReadPosRankSum=0.358;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:2,3:5:64.76:109,0,65
17    3921307    rs2247194    C    G    379.72    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.038;DB;DP=26;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=14.6;ReadPosRankSum=-0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:11,15:26:99:410,0,343
17    3922918    rs711178    A    G    436.36    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.338;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=13.22;ReadPosRankSum=0.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:16,17:33:99:466,0,550
17    3923115    rs2290437    G    A    352.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.523;DB;DP=24;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=0.9159;MQ=59.03;MQ0=0;MQRankSum=0.831;QD=14.67;ReadPosRankSum=2.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:12,12:24:99:382,0,429
17    3924306    rs2290439    A    G    733.88    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9729;MQ=60.0;MQ0=0;MQRankSum=0.858;QD=12.03;ReadPosRankSum=1.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:36,25:61:99:764,0,1266
17    3935310    rs2254021    T    A    246.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=25;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.749;QD=9.86;ReadPosRankSum=1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:15,10:25:99:277,0,499
17    3945542    .    T    TAC    231.39    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DP=9;FS=0.0;HRun=0;HaplotypeScore=23.0125;IndelType=I;MQ=59.13;MQ0=0;MQRankSum=-0.573;QD=25.71;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:3,6:9:85.47:270,0,85
17    3947588    rs35284780    C    T    592.61    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.742;DB;DP=46;Dels=0.0;FS=4.119;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=12.88;ReadPosRankSum=-1.169;SNPEFF_AMINO_ACID_CHANGE=S2032;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3947518_3947668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:25,21:46:99:623,0,754
17    3947644    rs781831    T    C    549.99    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.6;DB;DP=40;Dels=0.0;FS=1.384;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.219;QD=13.75;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=I2014V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3947518_3947668;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:19,21:40:99:580,0,608
17    3953083    rs781853    T    C    1016.40    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.071;DB;DP=63;Dels=0.0;FS=1.003;HRun=1;HaplotypeScore=1.9598;MQ=60.0;MQ0=0;MQRankSum=0.057;QD=16.13;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=P1978;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3953002_3953153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:25,38:63:99:1046,0,724
17    3953102    rs781852    A    G    1012.99    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.117;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=1.618;QD=17.17;ReadPosRankSum=0.399;SNPEFF_AMINO_ACID_CHANGE=L1972P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3953002_3953153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:27,32:59:99:1043,0,756
17    3961200    rs12938597    C    T    213.53    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=2.223;QD=13.35;ReadPosRankSum=-1.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:9,7:16:99:244,0,323
17    3961489    rs781839    C    T    326.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:360,27,0
17    3962428    rs113259677    A    AT    855.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=8;HaplotypeScore=95.7129;IndelType=I;MQ=60.83;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,26:26:78.23:898,78,0
17    3962450    rs9900661    A    G    441.37    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.155;DB;DP=36;Dels=0.0;FS=7.319;HRun=0;HaplotypeScore=3.6687;MQ=59.57;MQ0=0;MQRankSum=-0.121;QD=12.26;ReadPosRankSum=0.086;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:20,16:36:99:471,0,540
17    3966064    rs781825    A    G    545.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=C1622;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3966047_3966211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:578,42,0
17    3966280    rs781823    G    C    197.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,11:11:21.03:230,21,0
17    3968149    rs71383514    G    GA    403.09    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=26;FS=2.682;HRun=12;HaplotypeScore=105.4476;IndelType=I;MQ=58.38;MQ0=0;MQRankSum=0.783;QD=15.5;ReadPosRankSum=1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:7,19:26:40.36:442,0,40
17    3969527    rs9892466    T    A    88.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
17    3970408    rs9893302    C    T    87.83    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.85;QD=4.62;ReadPosRankSum=0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:15,4:19:99:118,0,463
17    3976075    rs781820    C    G    889.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,29:29:66.22:923,66,0
17    3977532    rs34760976    G    A    2565.56    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=4.068;DB;DP=158;Dels=0.0;FS=4.735;HRun=0;HaplotypeScore=3.461;MQ=59.59;MQ0=0;MQRankSum=-0.17;QD=16.24;ReadPosRankSum=0.288;SNPEFF_AMINO_ACID_CHANGE=A1199;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3977444_3977645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:77,81:158:99:2596,0,2128
17    3978531    rs34356467    G    T    651.52    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.124;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.335;QD=11.23;ReadPosRankSum=0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:30,28:58:99:682,0,1060
17    3979907    rs8065054    G    A    117.41    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.369;DB;DP=17;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=1.423;QD=6.91;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:12,5:17:99:147,0,379
17    3979949    rs7207986    G    A    273.30    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.396;DB;DP=22;Dels=0.0;FS=13.693;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.89;QD=12.42;ReadPosRankSum=-0.297;SNPEFF_AMINO_ACID_CHANGE=P1072;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3979931_3980053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:10,12:22:99:303,0,317
17    3979982    rs8065185    G    A    360.47    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.177;DB;DP=18;Dels=0.0;FS=13.088;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=20.03;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=L1061;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3979931_3980053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:7,11:18:99:390,0,239
17    3980318    rs897026    T    C    657.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:690,51,0
17    3981066    rs8070737    G    T    280.16    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.612;QD=14.75;ReadPosRankSum=0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:10,9:19:99:310,0,269
17    3981148    rs8074454    G    C    1300.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,38:38:96.32:1333,96,0
17    3985864    rs8068804    G    A    343.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:377,27,0
17    3989639    rs7213928    G    A    30.63    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=5.11;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:4,2:6:60.62:61,0,89
17    3989669    rs4790166    G    A    571.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=38.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:605,45,0
17    3991943    rs67005107    A    G    156.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=6.455;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.422;QD=17.36;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:3,6:9:93.76:186,0,94
17    3994225    rs12950730    C    A    95.89    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=8.72;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:7,4:11:99:126,0,259
17    3999199    rs12947597    C    T    927.77    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=4.263;DB;DP=57;Dels=0.0;FS=6.124;HRun=0;HaplotypeScore=0.9159;MQ=59.6;MQ0=0;MQRankSum=-1.118;QD=16.28;ReadPosRankSum=-1.2;SNPEFF_AMINO_ACID_CHANGE=A613;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_3999125_3999273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:25,32:57:99:958,0,619
17    4005576    rs62071004    C    T    443.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.176;DB;DP=40;Dels=0.0;FS=1.582;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.311;QD=11.08;ReadPosRankSum=-1.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:20,20:40:99:473,0,613
17    4005770    rs1869493    T    C    760.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,26:26:66.18:793,66,0
17    4007761    rs62071005    T    A    73.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.67;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:2,3:5:66.03:103,0,66
17    4007875    rs9907500    C    T    573.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:606,45,0
17    4008021    rs7222392    T    C    632.03    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.234;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.37;QD=12.64;ReadPosRankSum=1.226;SNPEFF_AMINO_ACID_CHANGE=L493;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4007927_4008105;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:27,23:50:99:662,0,788
17    4008820    rs10521129    G    A    182.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=15.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:6,6:12:99:213,0,207
17    4015997    rs58625333    A    G    114.66    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.62;DB;DP=24;Dels=0.0;FS=16.333;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.953;QD=4.78;ReadPosRankSum=-1.08;SNPEFF_AMINO_ACID_CHANGE=N324;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4015903_4016102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:17,7:24:99:145,0,517
17    4017434    rs2123842    T    C    148.06    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=13.46;ReadPosRankSum=2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:6,5:11:99:178,0,200
17    4020029    rs62071007    T    C    80.38    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.1;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:110,0,28
17    4027047    rs7225521    A    G    197.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
17    4027152    rs7214284    T    C    363.15    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=23;Dels=0.0;FS=1.935;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=15.79;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:11,12:23:99:393,0,386
17    4027392    rs7208760    G    C    661.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:695,51,0
17    4027411    rs7214779    T    C    111.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=7.42;ReadPosRankSum=-0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:10,5:15:99:141,0,375
17    4045809    rs4239043    T    C    240.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:274,24,0
17    4046101    rs1454121    A    G    70.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.34;SNPEFF_AMINO_ACID_CHANGE=V30A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4045836_4046314;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:102,9,0
17    4046936    rs71905319    CGA    C    540.84    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=3.0;DB;DP=22;FS=2.935;HRun=0;HaplotypeScore=77.0018;IndelType=D;MQ=57.32;MQ0=0;MQRankSum=1.478;QD=24.58;ReadPosRankSum=0.94;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZZEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381638    GT:AD:DP:GQ:PL    0/1:5,17:22:99:580,0,127
17    4047389    rs146367581    TC    T    176.46    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=17;FS=8.451;HRun=8;HaplotypeScore=97.0571;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=10.38;ReadPosRankSum=1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301391    GT:AD:DP:GQ:PL    0/1:8,9:17:99:215,0,172
17    4047504    rs12453863    C    T    74.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.01;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301391    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
17    4058168    rs71936267    CCTT    C    268.35    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=12;FS=3.233;HRun=0;HaplotypeScore=55.1004;IndelType=D;MQ=57.0;MQ0=0;MQRankSum=0.296;QD=22.36;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301391    GT:AD:DP:GQ:PL    0/1:5,7:12:99:307,0,169
17    4074261    rs897030    A    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    4077485    rs4790585    G    A    351.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:385,30,0
17    4083242    rs9915922    T    C    1946.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1979,174,0
17    4085834    rs1808820    C    A    195.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
17    4088291    rs2020118    C    T    817.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_AMINO_ACID_CHANGE=T448;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4088113_4088341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535427    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:850,63,0
17    4092986    rs62066550    G    A    33.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433651    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
17    4098573    rs5818941    A    AT    3002.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.607;DB;DP=109;FS=4.636;HRun=9;HaplotypeScore=240.7573;IndelType=I;MQ=60.21;MQ0=0;MQRankSum=1.386;QD=27.55;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:13,96:109:99:3045,174,0
17    4098998    rs2304586    A    G    71.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
17    4100591    rs6502773    C    T    548.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:581,45,0
17    4120494    rs9907369    G    C    669.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:702,54,0
17    4145774    rs12944876    G    A    1964.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1998,150,0
17    4145818    rs12709336    T    C    916.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=38.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341657    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:950,69,0
17    4337283    rs35751906    G    A    148.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=15;Dels=0.0;FS=14.472;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=1.093;QD=9.9;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=A7;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4337219_4337461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355530    GT:AD:DP:GQ:PL    0/1:9,6:15:74.41:178,0,74
17    4337412    rs3809853    C    G    511.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.38;MQ0=0;MQRankSum=-0.679;QD=13.82;ReadPosRankSum=0.745;SNPEFF_AMINO_ACID_CHANGE=V50;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4337219_4337461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355530    GT:AD:DP:GQ:PL    0/1:16,20:37:99:541,0,470
17    4349200    rs62067396    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    4350182    rs2047233    T    C    762.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:796,60,0
17    4350367    rs2047232    A    G    264.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=7.7321;MQ=52.65;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,10:10:27.05:298,27,0
17    4350373    rs143222902    GGT    G    316.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=77.5395;IndelType=D;MQ=52.65;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:2,8:10:24.08:359,24,0
17    4350407    rs2047231    G    C    68.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:100,9,0
17    4351312    rs7219205    A    G    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    4351345    rs6502785    A    C    246.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
17    4351396    rs6502786    C    T    338.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:371,30,0
17    4351640    rs884250    G    A    416.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:450,33,0
17    4352539    rs7224464    C    T    1324.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.12;SNPEFF_AMINO_ACID_CHANGE=F133;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4352530_4352682;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1358,102,0
17    4352799    rs7210204    T    G    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
17    4391132    rs2291743    C    T    1018.81    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.501;DB;DP=82;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=0.5784;MQ=59.49;MQ0=0;MQRankSum=-1.216;QD=12.42;ReadPosRankSum=-0.443;SNPEFF_AMINO_ACID_CHANGE=N367;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4391101_4391498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    0/1:46,36:82:99:1049,0,1376
17    4391153    rs333122    A    G    1058.87    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=3.45;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.51;MQ0=0;MQRankSum=-1.659;QD=12.31;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=L374;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4391101_4391498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    0/1:46,40:86:99:1089,0,1290
17    4391201    rs2291742    A    G    588.90    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.506;DB;DP=51;Dels=0.0;FS=2.978;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.895;QD=11.55;ReadPosRankSum=0.331;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333476    GT:AD:DP:GQ:PL    0/1:28,23:51:99:619,0,737
17    4436005    rs9892232    T    C    625.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=27.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329078    GT:AD:DP:GQ:PL    1/1:0,23:23:54.15:659,54,0
17    4436435    .    G    A    279.43    PASS    AC=2;AF=1.00;AN=2;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329078    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:312,24,0
17    4436897    rs12949158    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329078    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    4437214    rs4790202    C    T    549.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBBP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254718    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:582,45,0
17    4439313    rs1077200    A    G    347.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBBP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254718    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:380,33,0
17    4439497    rs12945732    A    G    438.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=23.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBBP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254718    GT:AD:DP:GQ:PL    1/1:0,19:19:39.09:472,39,0
17    4439501    rs1076071    C    G    503.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=25.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBBP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254718    GT:AD:DP:GQ:PL    1/1:0,20:20:42.12:536,42,0
17    4439727    rs3053652    T    TGG    1409.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=7;HaplotypeScore=95.1498;IndelType=I;MQ=60.28;MQ0=0;QD=41.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBBP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254718    GT:AD:DP:GQ:PL    1/1:5,29:34:90.30:1452,90,0
17    4439795    rs12945562    C    G    96.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.876;QD=10.71;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBBP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254718    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,139
17    4443453    rs12949204    C    G    86.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329078    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
17    4445559    rs8078483    G    C    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPNS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329078    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
17    4448853    rs2306267    C    T    425.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBBP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254718    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:459,36,0
17    4455500    rs7206974    T    C    1397.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.57;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=A275;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4455420_4455587;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBBP1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254718    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1430,111,0
17    4458029    rs6502797    T    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301395    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
17    4458302    rs1871348    C    A    318.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=22.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301395    GT:AD:DP:GQ:PL    1/1:0,14:14:30.08:351,30,0
17    4458314    rs1871347    C    T    309.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301395    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:343,27,0
17    4463023    rs11657054    G    A    728.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_AMINO_ACID_CHANGE=A58V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4462853_4463055;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301395    GT:AD:DP:GQ:PL    1/1:0,24:24:60.15:761,60,0
17    4463699    rs7216284    G    A    442.25    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=2.357;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.82;QD=10.28;ReadPosRankSum=0.948;SNPEFF_AMINO_ACID_CHANGE=R40W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4463677_4463876;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301395    GT:AD:DP:GQ:PL    0/1:26,17:43:99:472,0,773
17    4495740    rs12449695    G    A    372.88    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.579;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.129;QD=10.08;ReadPosRankSum=2.211;SNPEFF_AMINO_ACID_CHANGE=A162T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4495656_4495743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389313    GT:AD:DP:GQ:PL    0/1:24,13:37:99:403,0,796
17    4497084    rs9908079    G    T    232.75    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=27;Dels=0.0;FS=10.386;HRun=0;HaplotypeScore=3.1598;MQ=55.58;MQ0=0;MQRankSum=0.4;QD=8.62;ReadPosRankSum=-1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338859    GT:AD:DP:GQ:PL    0/1:16,11:27:99:263,0,257
17    4497160    rs8080130    T    C    848.38    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.084;DB;DP=59;Dels=0.0;FS=5.378;HRun=0;HaplotypeScore=1.3302;MQ=58.42;MQ0=0;MQRankSum=-0.145;QD=14.38;ReadPosRankSum=1.886;SNPEFF_AMINO_ACID_CHANGE=Y114;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4497117_4497192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338859    GT:AD:DP:GQ:PL    0/1:26,33:59:99:878,0,691
17    4498611    rs12103697    G    A    273.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=18;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.265;QD=15.17;ReadPosRankSum=1.325;SNPEFF_AMINO_ACID_CHANGE=T182;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4498440_4498622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338859    GT:AD:DP:GQ:PL    0/1:9,9:18:99:303,0,303
17    4498641    rs12939239    A    G    197.97    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=18;Dels=0.0;FS=1.952;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.555;QD=11.0;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338859    GT:AD:DP:GQ:PL    0/1:10,8:18:99:228,0,278
17    4498682    rs4790655    C    G    282    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTNL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338859    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
17    4535385    rs2619112    A    G    528.11    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.025;QD=19.56;ReadPosRankSum=-0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    0/1:10,17:27:99:558,0,312
17    4535413    rs6502804    T    C    597.28    PASS    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=27;Dels=0.0;FS=4.101;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.079;QD=22.12;ReadPosRankSum=-1.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    0/1:7,20:27:99:627,0,214
17    4536241    rs743646    T    C    1906.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=T485;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4536156_4536277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1939,150,0
17    4536832    rs11568125    G    A    466.08    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.256;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.356;QD=11.65;ReadPosRankSum=-0.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    0/1:23,17:40:99:496,0,805
17    4538923    rs11568115    T    C    36.03    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.21;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    0/1:3,2:5:66.03:66,0,106
17    4539392    rs7217186    C    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    0/1:2,2:4:61.79:67,0,62
17    4540277    rs2619118    C    T    284.15    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=21.86;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    0/1:4,9:13:99:314,0,126
17    4544641    rs11568075    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    4544729    rs9906597    A    G    328.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293761    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:361,30,0
17    4544978    rs11568074    G    GAGA    1144.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=54.9533;IndelType=I;MQ=51.5;MQ0=0;QD=60.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545513    GT:AD:DP:GQ:PL    1/1:2,17:19:54.19:1186,54,0
17    4574751    rs9436    T    A    397.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.949;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.26;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=T1036S;SNPEFF_CODON_CHANGE=Aca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4574680_4574826;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    0/1:15,15:30:99:428,0,410
17    4575283    rs3862485    A    G    394.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=P1145;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4574986_4576440;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301396    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:428,33,0
17    4576620    rs55677157    C    T    138.38    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.736;QD=19.77;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=P443;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4576545_4576751;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436683    GT:AD:DP:GQ:PL    0/1:1,6:7:12.54:168,0,13
17    4577112    rs11658808    G    A    280.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=18.72;ReadPosRankSum=2.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    0/1:6,9:15:99:311,0,167
17    4578007    rs4790673    C    G    1292.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1326,105,0
17    4579301    rs55884013    G    A    542.15    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=2.894;DB;DP=48;Dels=0.0;FS=5.097;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.861;QD=11.29;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    0/1:27,20:48:99:572,0,799
17    4579638    rs8071990    G    A    1175.57    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=0.999;DB;DP=73;Dels=0.0;FS=0.891;HRun=1;HaplotypeScore=1.8824;MQ=59.05;MQ0=0;MQRankSum=-0.497;QD=16.1;ReadPosRankSum=-1.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1206,0,865
17    4580137    rs6502806    A    G    737.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:770,57,0
17    4580224    rs11078530    C    T    290.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
17    4586253    rs67370001    GA    G    202.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=7;HaplotypeScore=42.5587;IndelType=D;MQ=55.19;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    1/1:1,8:9:24.05:244,24,0
17    4594003    rs4790218    T    C    381.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:414,30,0
17    4594847    rs7226084    T    C    968.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    1/1:0,31:31:75.22:1001,75,0
17    4594937    rs906454    A    G    414.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:447,33,0
17    4594968    rs906452    G    A    128.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091153.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269230    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:162,15,0
17    4620497    rs7208257    C    T    1107.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.45;DB;DP=84;Dels=0.0;FS=5.812;HRun=2;HaplotypeScore=1.8519;MQ=59.45;MQ0=0;MQRankSum=-0.297;QD=13.18;ReadPosRankSum=-1.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269260    GT:AD:DP:GQ:PL    0/1:42,42:84:99:1137,0,1132
17    4620928    rs28365158    T    C    276.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.646;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.564;QD=8.9;ReadPosRankSum=-1.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269260    GT:AD:DP:GQ:PL    0/1:18,12:31:99:306,0,539
17    4621773    rs4522461    T    G    677.63    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=1.455;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=0.313;QD=20.53;ReadPosRankSum=0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269260    GT:AD:DP:GQ:PL    0/1:13,20:33:99:708,0,413
17    4622077    rs5818979    C    CT    54.34    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=19;FS=0.0;HRun=15;HaplotypeScore=188.9817;IndelType=I;MQ=53.61;MQ0=0;MQRankSum=2.45;QD=2.86;ReadPosRankSum=0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269260    GT:AD:DP:GQ:PL    0/1:13,6:19:24.02:93,0,24
17    4622551    rs28365160    A    G    749.50    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.82;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.209;QD=12.29;ReadPosRankSum=-0.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269260    GT:AD:DP:GQ:PL    0/1:31,30:61:99:779,0,1039
17    4637698    rs11658971    G    A    45.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.736;QD=11.35;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293777    GT:AD:DP:GQ:PL    0/1:2,2:4:25.32:75,0,25
17    4638010    rs3744700    T    G    1014.28    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=4.128;DB;DP=54;Dels=0.0;FS=2.941;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.188;QD=18.78;ReadPosRankSum=-0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293777    GT:AD:DP:GQ:PL    0/1:22,32:54:99:1044,0,749
17    4638484    rs1876444    T    C    636.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=31.8;SNPEFF_AMINO_ACID_CHANGE=P226;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4638387_4638803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293778    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:669,51,0
17    4638563    rs2277680    G    A    208.91    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.341;DB;DP=23;Dels=0.0;FS=1.768;HRun=1;HaplotypeScore=1.4538;MQ=56.92;MQ0=0;MQRankSum=0.899;QD=9.08;ReadPosRankSum=1.209;SNPEFF_AMINO_ACID_CHANGE=A200V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4638387_4638803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293778    GT:AD:DP:GQ:PL    0/1:13,10:23:99:239,0,432
17    4638737    rs1050998    A    G    493.56    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.614;DB;DP=31;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.9469;MQ=59.25;MQ0=0;MQRankSum=0.106;QD=15.92;ReadPosRankSum=2.477;SNPEFF_AMINO_ACID_CHANGE=I142T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4638387_4638803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293778    GT:AD:DP:GQ:PL    0/1:12,19:31:99:524,0,341
17    4641755    rs1050997    C    T    920.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.7;SNPEFF_AMINO_ACID_CHANGE=G102;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4641703_4641785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293778    GT:AD:DP:GQ:PL    1/1:0,31:31:72.23:954,72,0
17    4642069    rs2250333    A    G    754.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293778    GT:AD:DP:GQ:PL    1/1:0,29:29:69.16:788,69,0
17    4642222    rs2304973    G    A    188.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.261;QD=8.98;ReadPosRankSum=-0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXCL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293778    GT:AD:DP:GQ:PL    0/1:14,7:21:99:219,0,487
17    4642787    rs2304970    C    A    165.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269289    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:198,18,0
17    4645324    rs3826517    T    C    998.92    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.578;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.38;MQ0=0;MQRankSum=-0.108;QD=13.32;ReadPosRankSum=-0.162;SNPEFF_AMINO_ACID_CHANGE=H314;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4645210_4645365;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269289    GT:AD:DP:GQ:PL    0/1:37,38:75:99:1029,0,1212
17    4646480    rs12451720    C    T    912.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269289    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:946,75,0
17    4646533    rs66838288    C    CAA    568.32    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.402;DB;DP=56;FS=0.0;HRun=13;HaplotypeScore=406.4236;IndelType=I;MQ=54.86;MQ0=0;MQRankSum=-0.11;QD=10.15;ReadPosRankSum=-1.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269289    GT:AD:DP:GQ:PL    0/1:30,15:56:99:607,0,343
17    4647002    rs8082690    A    G    489.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269289    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:522,42,0
17    4675595    rs73339919    G    A    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM4SF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270560    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
17    4683867    rs79571386    T    C    44.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328739    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    4686340    rs3853643    T    G    1850.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.71;MQ0=0;QD=23.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328739    GT:AD:DP:GQ:PL    1/1:1,78:79:99:1883,180,0
17    4686341    rs3853644    T    G    1846.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328739    GT:AD:DP:GQ:PL    1/1:0,78:78:99:1879,180,0
17    4689313    rs2279961    G    C    1699.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_AMINO_ACID_CHANGE=T77S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4689232_4689347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VMO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328739    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1733,132,0
17    4689572    rs4790706    T    C    693.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.53;SNPEFF_AMINO_ACID_CHANGE=T26A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4689453_4689729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VMO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328739    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:726,54,0
17    4692559    rs2304969    G    T    373.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.34;SNPEFF_AMINO_ACID_CHANGE=V49F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4692521_4692585;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331264    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:406,30,0
17    4693170    rs34850425    T    C    70.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.63;SNPEFF_AMINO_ACID_CHANGE=V152A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4693054_4693591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331264    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:103,9,0
17    4693508    rs34421346    G    C    63.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.31;SNPEFF_AMINO_ACID_CHANGE=V265L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4693054_4693591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTPD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331264    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
17    4699947    rs2241933    T    G    2482.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=58.94;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270586    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2515,214,0
17    4700446    rs12942695    T    C    48.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270586    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    4712395    rs1132446    A    T    3331.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=30.28;SNPEFF_AMINO_ACID_CHANGE=R128;SNPEFF_CODON_CHANGE=cgA/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4712395_4712500;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3331,256,0
17    4713981    rs7212512    A    G    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    4714021    rs3081314    G    GGAAA    823.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=43.4648;IndelType=I;MQ=43.66;MQ0=0;QD=74.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:1,10:11:33.11:866,33,0
17    4719294    rs11658287    C    T    1560.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1593,120,0
17    4720131    rs2302325    C    G    2763.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=59.77;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2797,217,0
17    4722133    rs3764900    C    T    1512.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1546,117,0
17    4722299    rs2326097    T    C    393.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:427,33,0
17    4722606    rs3764899    G    A    464.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.62;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:497,39,0
17    4722618    rs3835027    AG    A    433.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=93.0147;IndelType=D;MQ=57.23;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:476,39,0
17    4724936    rs4790233    T    G    655.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,25:25:60.14:688,60,0
17    4724942    rs4790234    A    G    785.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=28.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263088    GT:AD:DP:GQ:PL    1/1:0,28:28:72.17:818,72,0
17    4758174    rs73341669    C    A    131.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MINK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347992    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
17    4795619    rs137930139    TG    T    112.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DB;DP=7;FS=3.68;HRun=5;HaplotypeScore=24.1437;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=16.12;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MINK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347992    GT:AD:DP:GQ:PL    1/1:2,5:7:0.20:150,0,0
17    4796271    rs76133128    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293780    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    4796274    rs11556634    T    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_AMINO_ACID_CHANGE=V734A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4796274_4796362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MINK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    4796286    rs11556635    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_AMINO_ACID_CHANGE=P738L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4796274_4796362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MINK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    4796660    rs147436680    C    T    1596.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.48;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293780    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1629,123,0
17    4800233    rs2586531    A    G    535.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293780    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:568,42,0
17    4800290    rs2302317    C    T    158.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293780    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
17    4802685    rs2075763    G    A    142.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MINK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347992    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
17    4837210    rs2586529    A    G    502.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.25;MQ0=0;QD=26.45;SNPEFF_AMINO_ACID_CHANGE=P437;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4835894_4838325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP1BA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329125    GT:AD:DP:GQ:PL    1/1:0,18:19:45.13:536,45,0
17    4837243    rs41466145    C    T    855.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=25.16;SNPEFF_AMINO_ACID_CHANGE=T448;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4835894_4838325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP1BA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329125    GT:AD:DP:GQ:PL    1/1:0,34:34:78.17:888,78,0
17    4837952    .    A    AG    677.61    PASS    AC=2;AF=1.00;AN=2;DP=19;FS=0.0;HRun=3;HaplotypeScore=42.8852;IndelType=I;MQ=62.79;MQ0=0;QD=35.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225665    GT:AD:DP:GQ:PL    1/1:2,17:19:54.15:720,54,0
17    4905227    .    A    G    149.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.408;QD=13.63;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320785    GT:AD:DP:GQ:PL    0/1:5,6:11:99:180,0,158
17    4926126    rs35748479    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320785    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    4926882    rs346828    A    G    585.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.89;SNPEFF_AMINO_ACID_CHANGE=P916;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4926763_4931696;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320785    GT:AD:DP:GQ:PL    1/1:0,21:21:48.14:619,48,0
17    4936898    rs2304445    C    T    398.37    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.701;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.021;QD=12.45;ReadPosRankSum=-0.5;SNPEFF_AMINO_ACID_CHANGE=V296M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4936774_4937653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR172B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254853    GT:AD:DP:GQ:PL    0/1:18,13:32:99:428,0,608
17    4937575    rs346822    T    C    1279.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_AMINO_ACID_CHANGE=Q70R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_4936774_4937653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR172B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254853    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1313,99,0
17    5012622    rs145816264    C    T    1108.25    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.968;DB;DP=67;Dels=0.0;FS=5.497;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-1.1;QD=16.54;ReadPosRankSum=0.172;SNPEFF_AMINO_ACID_CHANGE=A162T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5012221_5013163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF232;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416429    GT:AD:DP:GQ:PL    0/1:28,39:67:99:1138,0,924
17    5013287    rs12603357    C    T    31.35    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.48;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF232;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250076    GT:AD:DP:GQ:PL    0/1:5,2:7:61.34:61,0,158
17    5024419    rs3930860    T    C    2912.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.57;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332776    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2946,223,0
17    5035657    rs111575757    G    T    1804.78    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.311;DB;DP=107;Dels=0.0;FS=10.353;HRun=1;HaplotypeScore=2.0641;MQ=55.56;MQ0=0;MQRankSum=1.117;QD=16.87;ReadPosRankSum=-0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:45,62:107:99:1835,0,1297
17    5035964    rs3887943    C    G    208.24    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=23.14;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:2,7:9:43.21:238,0,43
17    5036152    .    C    T    80.61    QDFilter2    AB=0.817;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.358;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.31;MQ0=0;MQRankSum=-6.772;QD=0.78;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:85,19:104:99:111,0,3033
17    5036161    rs73976312    G    A    130.02    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.207;DB;DP=121;Dels=0.0;FS=4.451;HRun=2;HaplotypeScore=0.9999;MQ=55.13;MQ0=0;MQRankSum=-7.374;QD=1.07;ReadPosRankSum=-0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:98,23:121:99:160,0,3376
17    5036191    rs75631218    G    A    439.69    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.111;DB;DP=179;Dels=0.0;FS=45.723;HRun=0;HaplotypeScore=0.0;MQ=55.23;MQ0=0;MQRankSum=-9.049;QD=2.46;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:145,34:179:99:470,0,4735
17    5036205    rs80328123    A    C    417.64    FSFilter60    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=4.021;DB;DP=193;Dels=0.0;FS=65.628;HRun=0;HaplotypeScore=2.4892;MQ=55.33;MQ0=0;MQRankSum=-9.332;QD=2.16;ReadPosRankSum=-1.531;SNPEFF_AMINO_ACID_CHANGE=K66Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5036205_5036285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:157,36:193:99:448,0,5084
17    5036214    rs114647990    C    T    285.27    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.18;DB;DP=198;Dels=0.0;FS=59.949;HRun=0;HaplotypeScore=3.2231;MQ=55.86;MQ0=0;MQRankSum=-9.052;QD=1.44;ReadPosRankSum=-2.551;SNPEFF_AMINO_ACID_CHANGE=R69W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5036205_5036285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:165,33:198:99:315,0,5127
17    5036224    rs72830922    C    G    375.21    QDFilter2    AB=0.834;AC=1;AF=0.50;AN=2;BaseQRankSum=0.496;DB;DP=201;Dels=0.0;FS=28.342;HRun=0;HaplotypeScore=3.1808;MQ=55.93;MQ0=0;MQRankSum=-9.01;QD=1.87;ReadPosRankSum=-3.975;SNPEFF_AMINO_ACID_CHANGE=T72R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5036205_5036285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:166,33:201:99:405,0,5137
17    5036274    rs78465432    C    A    745.94    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=4.752;DB;DP=169;Dels=0.0;FS=6.364;HRun=1;HaplotypeScore=1.6828;MQ=54.4;MQ0=0;MQRankSum=-9.452;QD=4.41;ReadPosRankSum=2.525;SNPEFF_AMINO_ACID_CHANGE=H89N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5036205_5036285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:130,39:169:99:776,0,4091
17    5036281    rs76236903    G    C    761.34    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=152;Dels=0.0;FS=7.963;HRun=1;HaplotypeScore=1.6828;MQ=54.07;MQ0=0;MQRankSum=-9.085;QD=5.01;ReadPosRankSum=3.354;SNPEFF_AMINO_ACID_CHANGE=S91T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5036205_5036285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:114,38:152:99:791,0,3752
17    5036329    rs72830923    A    G    684.43    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=3.842;DB;DP=94;Dels=0.0;FS=2.61;HRun=0;HaplotypeScore=0.9665;MQ=51.45;MQ0=0;MQRankSum=-7.919;QD=7.28;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:62,32:94:99:714,0,2211
17    5036849    rs3867174    T    C    953.55    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.648;DB;DP=87;Dels=0.0;FS=2.974;HRun=0;HaplotypeScore=2.6722;MQ=56.26;MQ0=0;MQRankSum=-0.841;QD=10.96;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:47,40:87:99:984,0,1431
17    5037195    rs74900103    G    A    377.99    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=3.606;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=54.09;MQ0=0;MQRankSum=-7.274;QD=3.44;ReadPosRankSum=4.861;SNPEFF_AMINO_ACID_CHANGE=R133K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5037182_5037291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:87,23:110:99:408,0,2821
17    5039138    rs3213878    C    T    1174.99    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.349;DB;DP=90;Dels=0.0;FS=7.078;HRun=0;HaplotypeScore=0.7887;MQ=53.62;MQ0=1;MQRankSum=-2.798;QD=13.06;ReadPosRankSum=-0.292;SNPEFF_AMINO_ACID_CHANGE=T193;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5039103_5039223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:48,42:90:99:1205,0,1279
17    5040758    rs7221061    A    C    434.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.29;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:467,36,0
17    5041197    .    G    A    140.33    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DP=12;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=55.05;MQ0=0;MQRankSum=-0.244;QD=11.69;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:7,5:12:99:170,0,204
17    5041696    rs57083294    G    A    402.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5774;MQ=56.62;MQ0=0;MQRankSum=0.972;QD=19.18;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:9,12:21:99:433,0,221
17    5041704    rs113215752    A    G    107.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.45;MQ0=0;MQRankSum=-0.234;QD=5.36;ReadPosRankSum=-0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:12,8:20:99:137,0,447
17    5042346    rs11870506    C    A    134.70    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.97;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:4,5:9:99:165,0,120
17    5042422    rs4080179    G    A    323.70    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.18;DB;DP=26;Dels=0.0;FS=9.585;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.363;QD=12.45;ReadPosRankSum=-1.672;SNPEFF_AMINO_ACID_CHANGE=V25I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5042266_5042476;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304328    GT:AD:DP:GQ:PL    0/1:14,12:26:99:354,0,408
17    5042715    rs61740308    G    A    623.18    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.598;DB;DP=39;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=0.8321;MQ=58.08;MQ0=0;MQRankSum=-0.239;QD=15.98;ReadPosRankSum=-2.598;SNPEFF_AMINO_ACID_CHANGE=C415Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5042550_5042969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:15,24:39:99:653,0,474
17    5042837    rs61745111    C    T    509.86    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.862;DB;DP=46;Dels=0.0;FS=1.217;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.331;QD=11.08;ReadPosRankSum=0.445;SNPEFF_AMINO_ACID_CHANGE=R139W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5042550_5042969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304328    GT:AD:DP:GQ:PL    0/1:26,20:46:99:540,0,739
17    5042894    rs8073787    T    C    1950.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=W158R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5042550_5042969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304328    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1984,153,0
17    5043186    rs7502608    G    A    1424.37    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=119;Dels=0.0;FS=8.843;HRun=0;HaplotypeScore=1.8824;MQ=59.81;MQ0=0;MQRankSum=0.014;QD=11.97;ReadPosRankSum=-1.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357482    GT:AD:DP:GQ:PL    0/1:67,52:119:99:1454,0,1909
17    5048207    rs2304447    A    G    314.37    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.5;DB;DP=32;Dels=0.0;FS=1.996;HRun=1;HaplotypeScore=0.0;MQ=50.66;MQ0=0;MQRankSum=-4.084;QD=9.82;ReadPosRankSum=0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:18,14:32:99:344,0,575
17    5050148    rs4644905    G    A    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    5050609    rs56143992    A    G    99.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=11.01;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:3,6:9:99:129,0,102
17    5051848    rs112209972    T    C    838.76    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.59;DB;DP=53;Dels=0.0;FS=12.252;HRun=0;HaplotypeScore=0.0;MQ=52.26;MQ0=0;MQRankSum=-0.472;QD=15.83;ReadPosRankSum=0.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:25,28:53:99:869,0,765
17    5066305    rs2307138    A    T    2069.15    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.963;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1877;MQ=59.41;MQ0=0;MQRankSum=0.789;QD=13.89;ReadPosRankSum=0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:77,72:149:99:2099,0,2411
17    5072134    rs118059961    C    T    1834.34    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.401;DB;DP=151;Dels=0.0;FS=0.615;HRun=2;HaplotypeScore=4.7519;MQ=59.32;MQ0=0;MQRankSum=0.314;QD=12.15;ReadPosRankSum=0.298;SNPEFF_AMINO_ACID_CHANGE=R1101W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5072062_5072350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:88,62:151:99:1864,0,2659
17    5072333    rs3816913    T    G    667.63    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.33;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.22;MQ0=3;MQRankSum=-0.632;QD=11.92;ReadPosRankSum=-0.255;SNPEFF_AMINO_ACID_CHANGE=I1167S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5072062_5072350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    0/1:31,25:56:99:698,0,847
17    5073730    rs2467305    C    G    1549.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=33.02;MQ0=6;QD=28.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250066    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1583,132,0
17    5084763    rs1689965    G    A    6320.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=50.45;MQ0=4;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=R142C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5083373_5086253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF594;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381752    GT:AD:DP:GQ:PL    1/1:0,183:183:99:6320,467,0
17    5085857    rs1730488    C    T    2109.90    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=158;Dels=0.0;FS=0.608;HRun=3;HaplotypeScore=1.811;MQ=59.11;MQ0=0;MQRankSum=-0.292;QD=13.35;ReadPosRankSum=0.364;SNPEFF_AMINO_ACID_CHANGE=A160;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5085505_5086312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF594;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389222    GT:AD:DP:GQ:PL    0/1:84,73:158:99:2140,0,2457
17    5126481    .    T    G    111.08    QDFilter2    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.993;DP=125;Dels=0.0;FS=2.464;HRun=3;HaplotypeScore=8.1984;MQ=58.66;MQ0=0;MQRankSum=0.09;QD=0.89;ReadPosRankSum=5.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399592    GT:AD:DP:GQ:PL    0/1:47,77:125:99:141,0,1222
17    5126768    rs78015303    G    A    1213.05    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.462;DB;DP=108;Dels=0.0;FS=23.53;HRun=1;HaplotypeScore=0.5784;MQ=58.94;MQ0=0;MQRankSum=-0.188;QD=11.13;ReadPosRankSum=1.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf87;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399592    GT:AD:DP:GQ:PL    0/1:67,41:108:99:1243,0,2038
17    5211903    .    C    CAATT    573.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DP=12;FS=0.0;HRun=0;HaplotypeScore=43.4857;IndelType=I;MQ=56.04;MQ0=0;MQRankSum=0.6;QD=47.78;ReadPosRankSum=1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:6,6:12:99:612,0,192
17    5268337    rs57839578    A    T    139.95    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=17;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.914;QD=8.23;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:8,9:17:99:170,0,260
17    5268356    rs146619503    TA    T    517.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=13;HaplotypeScore=139.7432;IndelType=D;MQ=59.58;MQ0=0;QD=16.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    1/1:6,26:32:77.32:560,77,0
17    5268712    rs2309381    A    G    61    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=7.63;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:5,3:8:90.99:91,0,181
17    5280440    rs3026101    T    C    1582.03    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=104;Dels=0.0;FS=2.667;HRun=0;HaplotypeScore=1.8893;MQ=59.78;MQ0=0;MQRankSum=-1.144;QD=15.21;ReadPosRankSum=0.416;SNPEFF_AMINO_ACID_CHANGE=R642;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5280411_5280600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537505    GT:AD:DP:GQ:PL    0/1:44,60:104:99:1612,0,1371
17    5283617    rs11868032    A    T    442.58    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.237;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.829;QD=24.59;ReadPosRankSum=-2.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:3,15:18:73.65:473,0,74
17    5284480    rs3026109    T    C    80.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.04;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:110,0,69
17    5284698    rs1143206    A    G    621.77    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.278;QD=14.46;ReadPosRankSum=-1.035;SNPEFF_AMINO_ACID_CHANGE=Q752;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5284684_5284800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537505    GT:AD:DP:GQ:PL    0/1:20,23:43:99:652,0,604
17    5284719    rs1065482    T    C    511.16    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.318;DB;DP=38;Dels=0.0;FS=1.331;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.424;QD=13.45;ReadPosRankSum=1.973;SNPEFF_AMINO_ACID_CHANGE=N759;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5284684_5284800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537505    GT:AD:DP:GQ:PL    0/1:20,18:38:99:541,0,634
17    5284770    rs1065483    G    A    560.71    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.155;DB;DP=40;Dels=0.0;FS=2.795;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.726;QD=14.02;ReadPosRankSum=-0.992;SNPEFF_AMINO_ACID_CHANGE=R776;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5284684_5284800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537505    GT:AD:DP:GQ:PL    0/1:18,22:40:99:591,0,607
17    5289580    rs11209    A    G    1147.38    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.334;DB;DP=91;Dels=0.0;FS=8.621;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=-0.289;QD=12.61;ReadPosRankSum=-0.918;SNPEFF_AMINO_ACID_CHANGE=H609;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5289422_5289589;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543132    GT:AD:DP:GQ:PL    0/1:49,41:91:99:1177,0,1469
17    5289676    rs1806222    C    T    321.11    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.693;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.67;MQ0=0;MQRankSum=0.319;QD=9.17;ReadPosRankSum=-0.425;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:22,13:35:99:351,0,759
17    5290033    rs1071705    T    C    894.84    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.19;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.67;MQ0=0;MQRankSum=-0.515;QD=12.97;ReadPosRankSum=-0.319;SNPEFF_AMINO_ACID_CHANGE=K604;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5290028_5290146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543132    GT:AD:DP:GQ:PL    0/1:34,35:69:99:925,0,1024
17    5290599    rs739766    G    A    185.35    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=17;Dels=0.0;FS=12.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=10.9;ReadPosRankSum=-0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:10,7:17:99:215,0,362
17    5290681    rs739767    A    C    590.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.151;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.522;QD=10.54;ReadPosRankSum=1.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:32,24:56:99:620,0,1016
17    5290703    rs739768    G    A    954.81    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=11.94;ReadPosRankSum=0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:45,35:80:99:985,0,1360
17    5290824    rs748486    C    A    1236.39    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.177;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.8;MQ0=0;MQRankSum=-1.891;QD=10.75;ReadPosRankSum=1.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:66,49:115:99:1266,0,2369
17    5291276    rs112437444    AAAAT    A    640.10    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=4.188;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=115.3429;IndelType=D;MQ=56.14;MQ0=0;MQRankSum=-1.013;QD=25.6;ReadPosRankSum=0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262477    GT:AD:DP:GQ:PL    0/1:11,14:25:99:679,0,709
17    5294976    rs14231    T    A    128.59    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.563;DB;DP=18;Dels=0.0;FS=2.823;HRun=0;HaplotypeScore=1.9833;MQ=60.0;MQ0=0;MQRankSum=-1.971;QD=7.14;ReadPosRankSum=2.169;SNPEFF_AMINO_ACID_CHANGE=P332;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5294881_5294982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543132    GT:AD:DP:GQ:PL    0/1:13,5:18:99:159,0,482
17    5295001    rs2285748    A    G    141.52    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=13;Dels=0.0;FS=3.123;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=1.855;QD=10.89;ReadPosRankSum=-1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:8,5:13:99:172,0,262
17    5298320    rs1806240    C    T    166.19    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=18;Dels=0.0;FS=2.772;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=9.23;ReadPosRankSum=-0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:11,7:18:99:196,0,400
17    5298396    rs2309372    G    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
17    5302778    rs12602074    T    C    79.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:109,0,69
17    5308308    rs8067757    G    A    161.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
17    5308377    rs2301739    C    T    133.66    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.236;DB;DP=19;Dels=0.0;FS=2.185;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=7.03;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=T217;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5308377_5308563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543132    GT:AD:DP:GQ:PL    0/1:13,6:19:99:164,0,404
17    5308603    rs3026133    G    A    173.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.054;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.38;QD=10.84;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:10,6:16:99:203,0,327
17    5312271    rs929262    A    G    160.50    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=18;Dels=0.0;FS=5.008;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.453;QD=8.92;ReadPosRankSum=-1.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:11,7:18:99:190,0,364
17    5314263    rs1806255    G    C    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,71
17    5317492    rs1806263    C    A    207.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.048;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.368;QD=12.94;ReadPosRankSum=0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:8,8:16:99:237,0,275
17    5319748    rs1806264    A    C    197.69    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=15.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:5,8:13:99:228,0,156
17    5320044    rs1806265    T    A    194.22    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.604;DB;DP=21;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.858;QD=9.25;ReadPosRankSum=1.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP88;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225696    GT:AD:DP:GQ:PL    0/1:14,7:21:99:224,0,477
17    5324588    rs4444392    C    T    131.43    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.024;DB;DP=28;Dels=0.0;FS=1.711;HRun=9;HaplotypeScore=2.2611;MQ=59.17;MQ0=0;MQRankSum=-1.031;QD=4.69;ReadPosRankSum=0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327154    GT:AD:DP:GQ:PL    0/1:18,10:28:99:161,0,627
17    5324836    rs9303192    C    T    263.54    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.24;QD=17.57;ReadPosRankSum=-2.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327154    GT:AD:DP:GQ:PL    0/1:4,11:15:99:294,0,106
17    5324893    rs4790770    A    C    67.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.5;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327154    GT:AD:DP:GQ:PL    0/1:2,3:5:60.54:97,0,61
17    5326089    rs1071648    C    T    430.12    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.488;QD=11.03;ReadPosRankSum=-0.961;SNPEFF_AMINO_ACID_CHANGE=L85;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5326089_5326149;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAIN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327154    GT:AD:DP:GQ:PL    0/1:22,16:39:99:460,0,756
17    5326145    rs12761    C    G    599.71    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.254;DB;DP=42;Dels=0.0;FS=3.059;HRun=0;HaplotypeScore=2.3404;MQ=59.34;MQ0=0;MQRankSum=-1.574;QD=14.28;ReadPosRankSum=1.952;SNPEFF_AMINO_ACID_CHANGE=N103K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5326089_5326149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAIN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327154    GT:AD:DP:GQ:PL    0/1:22,20:42:99:630,0,587
17    5326162    rs2189336    G    A    610.34    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.059;DB;DP=39;Dels=0.0;FS=3.804;HRun=0;HaplotypeScore=0.5784;MQ=59.29;MQ0=0;MQRankSum=-1.585;QD=15.65;ReadPosRankSum=-0.499;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327154    GT:AD:DP:GQ:PL    0/1:18,21:39:99:640,0,528
17    5326178    rs2189337    C    T    502.19    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.116;DB;DP=36;Dels=0.0;FS=4.501;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=1.179;QD=13.95;ReadPosRankSum=-1.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327154    GT:AD:DP:GQ:PL    0/1:16,20:36:99:532,0,462
17    5329199    rs3809842    C    T    37.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.57;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004148.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399576    GT:AD:DP:GQ:PL    0/1:3,2:5:67.83:68,0,102
17    5334804    rs72152822    T    TAAAAAAAAAA    1331.93    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=2.399;DB;DP=40;FS=0.0;HRun=16;HaplotypeScore=536.3107;IndelType=I;MQ=43.48;MQ0=0;MQRankSum=-2.775;QD=33.3;ReadPosRankSum=-3.105;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_5334617_5334873;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004148.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399576    GT:AD:DP:GQ:PL    0/1:29,5:40:99:1371,0,696
17    5334850    rs72634034    G    A    515.20    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.52;DB;DP=63;Dels=0.0;FS=1.171;HRun=0;HaplotypeScore=5.5772;MQ=48.27;MQ0=0;MQRankSum=-0.79;QD=8.18;ReadPosRankSum=0.46;SNPEFF_AMINO_ACID_CHANGE=V146I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5334617_5334873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004148.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399576    GT:AD:DP:GQ:PL    0/1:32,28:63:99:545,0,699
17    5334873    rs79069182    GA    G    884.20    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=5.622;DB;DP=75;FS=2.122;HRun=3;HaplotypeScore=514.4927;IndelType=D;MQ=50.32;MQ0=0;MQRankSum=-1.521;QD=11.79;ReadPosRankSum=0.599;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004148.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399576    GT:AD:DP:GQ:PL    0/1:43,31:75:99:923,0,1225
17    5335752    rs8072363    C    T    177.64    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.15;ReadPosRankSum=1.246;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225698    GT:AD:DP:GQ:PL    0/1:4,7:11:99:208,0,129
17    5336058    rs1050390    G    A    32.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=5.48;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225698    GT:AD:DP:GQ:PL    0/1:3,3:6:62.84:63,0,105
17    5336188    rs1050456    A    G    156.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=15.69;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPAIN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405578    GT:AD:DP:GQ:PL    0/1:4,6:10:99:187,0,137
17    5336210    rs1050461    T    C    245.83    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.556;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.772;QD=16.39;ReadPosRankSum=0.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004148.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399576    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,235
17    5336791    rs4790264    G    T    820.41    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.237;DB;DP=78;Dels=0.0;FS=5.957;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.378;QD=10.52;ReadPosRankSum=0.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004148.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399576    GT:AD:DP:GQ:PL    0/1:47,31:78:99:850,0,1476
17    5337137    rs2285747    G    C    385.40    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.402;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-1.257;QD=11.68;ReadPosRankSum=-1.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004148.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399576    GT:AD:DP:GQ:PL    0/1:19,14:33:99:415,0,684
17    5338301    rs41307954    GAAAACAGACAAGGC    G    967.73    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=27;FS=2.596;HRun=0;HaplotypeScore=306.7183;IndelType=D;MQ=50.99;MQ0=0;MQRankSum=-2.646;QD=35.84;ReadPosRankSum=-0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004148.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399576    GT:AD:DP:GQ:PL    0/1:18,9:27:99:1007,0,1203
17    5347576    rs2074438    G    A    598.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=-1.701;QD=17.09;ReadPosRankSum=0.638;SNPEFF_AMINO_ACID_CHANGE=Y467;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5346810_5347833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433302    GT:AD:DP:GQ:PL    0/1:14,21:35:99:628,0,350
17    5354077    rs3744714    C    T    839.81    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.102;DB;DP=58;Dels=0.0;FS=6.174;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.967;QD=14.48;ReadPosRankSum=0.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225296    GT:AD:DP:GQ:PL    0/1:31,27:58:99:870,0,914
17    5383251    rs1805431    A    G    69.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.684;QD=8.74;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DERL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158771    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,179
17    5442951    rs72827628    C    T    75.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.51;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262467    GT:AD:DP:GQ:PL    0/1:3,3:6:88.06:105,0,88
17    5487164    rs884367    C    G    43.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=6.22;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=S38;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5487007_5487832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262467    GT:AD:DP:GQ:PL    0/1:3,4:7:23.47:74,0,23
17    5991344    rs2302836    C    T    1116.01    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.121;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8317;MQ=59.74;MQ0=0;MQRankSum=0.525;QD=12.68;ReadPosRankSum=-0.491;SNPEFF_AMINO_ACID_CHANGE=H154;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_5991310_5991424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSCD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317744    GT:AD:DP:GQ:PL    0/1:48,40:88:99:1146,0,1470
17    5993530    rs34168659    CAA    C    224.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=10;HaplotypeScore=28.8751;IndelType=D;MQ=59.83;MQ0=0;QD=28.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317744    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:266,24,0
17    6014176    rs2302837    A    G    3670.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=36.34;SNPEFF_AMINO_ACID_CHANGE=T365;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6014091_6014255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSCD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317744    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3670,274,0
17    6021541    rs2302838    C    T    372.23    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6918;MQ=59.25;MQ0=0;MQRankSum=-1.601;QD=12.01;ReadPosRankSum=-0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317744    GT:AD:DP:GQ:PL    0/1:15,16:31:99:402,0,440
17    6329846    rs71370441    G    A    63.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.67;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250087    GT:AD:DP:GQ:PL    0/1:2,3:5:61.44:93,0,61
17    6330068    rs2292546    T    C    1555.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.56;MQ0=0;QD=29.36;SNPEFF_AMINO_ACID_CHANGE=P154;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6329935_6330076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250087    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1589,123,0
17    6330109    rs2292545    G    A    678.33    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.9;DB;DP=46;Dels=0.0;FS=1.13;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.08;QD=14.75;ReadPosRankSum=-0.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250087    GT:AD:DP:GQ:PL    0/1:22,24:46:99:708,0,643
17    6330153    rs925616    C    T    697.51    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.097;DB;DP=50;Dels=0.0;FS=4.29;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.954;QD=13.95;ReadPosRankSum=-0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250087    GT:AD:DP:GQ:PL    0/1:23,27:50:99:728,0,720
17    6331803    rs8075035    T    C    766.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6331638_6331826;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381129    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:800,60,0
17    6331836    rs12453262    T    G    584.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250087    GT:AD:DP:GQ:PL    1/1:0,17:18:45.14:617,45,0
17    6337247    rs12449580    C    G    135.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=9.69;ReadPosRankSum=-0.194;SNPEFF_AMINO_ACID_CHANGE=D90H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6337239_6337418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250087    GT:AD:DP:GQ:PL    0/1:8,6:14:99:166,0,250
17    6337512    .    G    A    72.92    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.23;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250087    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:103,0,30
17    6348823    rs7220100    A    G    315.39    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=0.691;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.099;QD=24.26;ReadPosRankSum=1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM64A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250056    GT:AD:DP:GQ:PL    0/1:2,11:13:43.44:345,0,43
17    6350598    rs113827676    AT    A    71.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;FS=0.0;HRun=9;HaplotypeScore=22.74;IndelType=D;MQ=58.11;MQ0=0;MQRankSum=-0.361;QD=7.12;ReadPosRankSum=-1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262483    GT:AD:DP:GQ:PL    0/1:5,5:10:99:110,0,111
17    6353679    rs7218283    A    C    1909.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262483    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1942,141,0
17    6358989    rs73346328    G    C    74.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM64A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250056    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:107,9,0
17    6364753    rs11654099    A    G    2251.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=D774;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6364693_6364876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421306    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2284,187,0
17    6366928    rs76156693    T    C    33.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262483    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:64,0,33
17    6373561    rs9913373    G    A    79.17    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.79;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262483    GT:AD:DP:GQ:PL    0/1:1,3:4:22.31:109,0,22
17    6380567    rs187900964    G    T    45.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=5.03;ReadPosRankSum=-2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262483    GT:AD:DP:GQ:PL    0/1:6,3:9:75.24:75,0,173
17    6386947    rs34897053    G    A    451.20    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=28;Dels=0.0;FS=1.542;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.659;QD=16.11;ReadPosRankSum=-0.376;SNPEFF_AMINO_ACID_CHANGE=S123;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6386837_6387072;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421306    GT:AD:DP:GQ:PL    0/1:11,17:28:99:481,0,341
17    6406731    rs3809836    T    C    175.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262483    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
17    6483046    rs3744720    T    C    1176.37    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.631;DB;DP=85;Dels=0.0;FS=2.06;HRun=0;HaplotypeScore=0.9995;MQ=59.18;MQ0=0;MQRankSum=0.004;QD=13.84;ReadPosRankSum=0.355;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    0/1:46,39:85:99:1206,0,1375
17    6493056    rs367918    T    C    798.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:831,66,0
17    6493198    rs1443417    T    C    604.38    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.686;DB;DP=49;Dels=0.0;FS=6.129;HRun=1;HaplotypeScore=0.9983;MQ=59.53;MQ0=0;MQRankSum=-1.997;QD=12.33;ReadPosRankSum=1.5;SNPEFF_AMINO_ACID_CHANGE=Q352R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6493099_6493323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542826    GT:AD:DP:GQ:PL    0/1:26,23:49:99:634,0,769
17    6493434    rs74547253    C    T    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    0/1:2,2:4:64.10:67,0,64
17    6502399    rs77498065    A    G    71.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=8.95;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,180
17    6511781    rs4796519    A    G    1532.50    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.092;DB;DP=125;Dels=0.0;FS=0.712;HRun=1;HaplotypeScore=0.6651;MQ=59.63;MQ0=0;MQRankSum=0.107;QD=12.26;ReadPosRankSum=-1.058;SNPEFF_AMINO_ACID_CHANGE=A273;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6511668_6511784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542606    GT:AD:DP:GQ:PL    0/1:68,57:125:99:1562,0,2121
17    6513692    rs4796520    T    G    86.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
17    6515387    rs2289642    A    G    1456.31    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.521;DB;DP=107;Dels=0.0;FS=0.745;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.683;QD=13.61;ReadPosRankSum=-0.689;SNPEFF_AMINO_ACID_CHANGE=L167P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6515239_6515468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542606    GT:AD:DP:GQ:PL    0/1:56,51:107:99:1486,0,1814
17    6515392    rs79173884    T    G    1407.75    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.923;DB;DP=106;Dels=0.0;FS=0.737;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.222;QD=13.28;ReadPosRankSum=-0.035;SNPEFF_AMINO_ACID_CHANGE=I165;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6515239_6515468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542606    GT:AD:DP:GQ:PL    0/1:58,48:106:99:1438,0,1811
17    6524358    rs8074991    G    A    202.01    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.766;DB;DP=19;Dels=0.0;FS=7.858;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.702;QD=10.63;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    0/1:11,8:19:99:232,0,411
17    6531552    rs16955985    A    C    1057.61    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.396;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.868;QD=16.53;ReadPosRankSum=-0.91;SNPEFF_AMINO_ACID_CHANGE=H201Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6531437_6532061;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    0/1:28,36:64:99:1088,0,867
17    6531648    rs2072149    A    G    584.90    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.911;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9852;MQ=60.0;MQ0=0;MQRankSum=2.434;QD=16.71;ReadPosRankSum=-1.54;SNPEFF_AMINO_ACID_CHANGE=S169;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6531437_6532061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    0/1:16,19:35:99:615,0,532
17    6538355    rs2301873    G    A    876.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.224;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8902;MQ=59.63;MQ0=0;MQRankSum=0.113;QD=14.14;ReadPosRankSum=-2.07;SNPEFF_AMINO_ACID_CHANGE=S23;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6538331_6538491;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0753;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361413    GT:AD:DP:GQ:PL    0/1:31,31:62:99:907,0,925
17    6544248    rs1157900    G    A    30.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.12;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_6544078_6544547;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250101    GT:AD:DP:GQ:PL    1/1:0,2:2:6:61,6,0
17    6544275    rs1157901    T    C    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225728    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    6545702    rs9909640    C    T    275.91    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=23;Dels=0.0;FS=5.519;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.093;QD=12.0;ReadPosRankSum=0.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225728    GT:AD:DP:GQ:PL    0/1:13,10:23:99:306,0,431
17    6546167    rs78547240    G    A    263.04    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=20.23;ReadPosRankSum=-0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225728    GT:AD:DP:GQ:PL    0/1:5,8:13:99:293,0,145
17    6546259    rs2285999    T    C    801.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225728    GT:AD:DP:GQ:PL    1/1:1,23:24:66.21:835,66,0
17    6548168    rs2240277    T    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250101    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    6553543    rs17842438    A    T    327.22    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.567;QD=12.12;ReadPosRankSum=-1.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225728    GT:AD:DP:GQ:PL    0/1:16,11:27:99:357,0,577
17    6553583    rs2301874    G    A    602.70    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=12.3;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225728    GT:AD:DP:GQ:PL    0/1:25,24:49:99:633,0,841
17    6555546    rs111997393    C    CG    1272.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=2;HaplotypeScore=78.2649;IndelType=I;MQ=60.35;MQ0=0;QD=41.06;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_6554971_6556593;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf100;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000391428    GT:AD:DP:GQ:PL    1/1:0,31:31:93.30:1315,93,0
17    6591098    rs218692    A    T    285.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293800    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:319,24,0
17    6593922    rs218696    T    C    579.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293800    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:612,45,0
17    6599365    rs7220915    T    C    183.39    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=18.34;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293800    GT:AD:DP:GQ:PL    0/1:3,7:10:87.28:213,0,87
17    6616669    rs62061545    T    G    121.20    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=2.632;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=9.32;ReadPosRankSum=0.101;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_6616551_6616687;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293800    GT:AD:DP:GQ:PL    0/1:7,6:13:99:151,0,191
17    6716241    .    C    T    1458.22    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=4.331;DP=105;Dels=0.0;FS=2.593;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.862;QD=13.89;ReadPosRankSum=-0.189;SNPEFF_AMINO_ACID_CHANGE=R108H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6716150_6716372;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEKT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535086    GT:AD:DP:GQ:PL    0/1:51,54:105:99:1488,0,1460
17    6797773    rs2271314    A    C    103.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=15;Dels=0.0;FS=2.515;HRun=0;HaplotypeScore=0.734;MQ=58.45;MQ0=0;MQRankSum=-0.306;QD=6.88;ReadPosRankSum=-0.551;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,5:15:99:133,0,317
17    6797901    .    G    A    141.75    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.196;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.949;QD=7.09;ReadPosRankSum=0.949;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,6:20:99:172,0,368
17    6797932    rs115803787    A    T    307.92    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.373;QD=14.66;ReadPosRankSum=0.88;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,11:21:99:338,0,339
17    6798378    rs573836    G    T    3053.68    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=42.2249;MQ=57.95;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,85:86:99:3087,229,0
17    6798387    rs139475307    ATCT    A    1993.18    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=5.881;DB;DP=83;FS=4.24;HRun=0;HaplotypeScore=628.1603;IndelType=D;MQ=58.0;MQ0=0;MQRankSum=-0.703;QD=24.01;ReadPosRankSum=-0.397;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,47:83:99:2032,0,2009
17    6900362    rs2070589    C    T    131.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027763.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399540    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
17    6900383    rs312468    T    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027763.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399540    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    6901672    rs2292350    G    A    78.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027763.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399540    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
17    6902179    rs312470    G    A    1728.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.58;MQ0=0;QD=31.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027763.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399540    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1762,135,0
17    6902743    rs1042356    G    A    1290.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=S255;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6902625_6902785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251535    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1323,102,0
17    6902760    rs1126667    A    G    1173.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=Q261R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6902625_6902785;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251535    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1206,93,0
17    6902887    rs2292352    A    G    277.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027763.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399540    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:311,27,0
17    6903537    rs2292353    G    A    2040.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.6;MQ0=0;QD=35.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027763.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399540    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2074,157,0
17    6903944    rs11078659    G    A    80.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027763.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399540    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
17    6903998    rs312472    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027763.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399540    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    6905061    rs1042357    T    G    3322.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=59.74;MQ0=0;QD=36.92;SNPEFF_AMINO_ACID_CHANGE=T364;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6904921_6905130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251535    GT:AD:DP:GQ:PL    1/1:1,89:90:99:3323,262,0
17    6905624    rs13396    T    C    227.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480801    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:260,21,0
17    6905643    rs15966    T    C    294.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480801    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
17    6915401    rs2271316    C    G    101.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251535    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
17    6917703    rs7338    C    T    1013.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251535    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1046,78,0
17    6917798    rs12135    T    C    196.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251535    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:230,18,0
17    6919093    rs14309    T    C    1116.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_AMINO_ACID_CHANGE=G13;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6919093_6919194;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC040977.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000552775    GT:AD:DP:GQ:PL    1/1:0,34:34:87.26:1149,87,0
17    6926907    rs72834413    G    T    32.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.42;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293805    GT:AD:DP:GQ:PL    0/1:3,2:5:62.10:62,0,103
17    6927350    rs312461    A    G    1632.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293805    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1666,138,0
17    6928019    rs55799550    C    CCAG    348.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=92.6245;IndelType=I;MQ=60.47;MQ0=0;QD=15.16;SNPEFF_AMINO_ACID_CHANGE=S234SS;SNPEFF_CODON_CHANGE=tcc/tcCAGc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_17_6927720_6928082;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293805    GT:AD:DP:GQ:PL    1/1:16,7:23:21.07:391,21,0
17    6929924    rs379478    T    C    2444.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.79;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=H346;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6929776_6929940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCL6B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293805    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2478,187,0
17    6939522    rs11652868    C    T    75.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.07;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_6939477_6939900;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308027    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
17    6940393    rs312457    G    A    171.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308009    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
17    6942108    rs11078663    C    T    2160.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=S327;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6941471_6942208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308027    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2193,160,0
17    6943266    rs4796576    G    A    5057.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9953;MQ=59.84;MQ0=0;QD=34.64;SNPEFF_AMINO_ACID_CHANGE=G422;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6943082_6943438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308027    GT:AD:DP:GQ:PL    1/1:0,146:146:99:5057,379,0
17    6979179    rs364569    A    G    385.38    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.667;DB;DP=52;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.69;MQ0=0;MQRankSum=-1.66;QD=7.41;ReadPosRankSum=1.212;SNPEFF_AMINO_ACID_CHANGE=P158;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6979050_6979204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC10A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416562    GT:AD:DP:GQ:PL    0/1:31,21:52:99:415,0,1023
17    6979218    rs3830425    AATAGG    A    770.60    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=3.814;DB;DP=37;FS=8.984;HRun=0;HaplotypeScore=240.8759;IndelType=D;MQ=52.52;MQ0=0;MQRankSum=-2.44;QD=20.83;ReadPosRankSum=-0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254868    GT:AD:DP:GQ:PL    0/1:22,15:37:99:810,0,1483
17    6981353    rs732828    G    C    2239.69    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.521;DB;DP=153;DS;Dels=0.0;FS=8.695;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-1.047;QD=14.64;ReadPosRankSum=2.228;SNPEFF_AMINO_ACID_CHANGE=L49;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6981316_6981432;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC10A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254868    GT:AD:DP:GQ:PL    0/1:80,73:153:99:2270,0,2475
17    6981397    rs90951    A    G    1300.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.142;DB;DP=80;Dels=0.0;FS=3.066;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.652;QD=16.25;ReadPosRankSum=-1.338;SNPEFF_AMINO_ACID_CHANGE=C35R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_6981316_6981432;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC10A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254868    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1330,0,1372
17    7011722    rs62061385    G    A    59.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=14.99;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254850    GT:AD:DP:GQ:PL    0/1:1,3:4:20.47:90,0,20
17    7093975    .    A    G    252.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.012;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.69;MQ0=0;MQRankSum=0.455;QD=7.9;ReadPosRankSum=-1.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DLG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539674    GT:AD:DP:GQ:PL    0/1:16,16:32:99:283,0,490
17    7095507    rs2242449    C    T    69.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.91;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DLG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293813    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,108
17    7096707    rs3215125    TC    T    188.54    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=13;FS=3.09;HRun=5;HaplotypeScore=32.7801;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=0.536;QD=14.5;ReadPosRankSum=-0.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DLG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293813    GT:AD:DP:GQ:PL    0/1:5,8:13:99:228,0,128
17    7099811    rs17203281    G    A    1696.29    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=93;Dels=0.0;FS=4.034;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.849;QD=18.24;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=I329;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7099792_7099894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DLG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380912    GT:AD:DP:GQ:PL    0/1:40,53:93:99:1726,0,1123
17    7111624    rs178471    T    C    67.34    QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.233;DB;DP=35;Dels=0.0;FS=13.392;HRun=3;HaplotypeScore=0.5784;MQ=58.0;MQ0=0;MQRankSum=0.889;QD=1.92;ReadPosRankSum=-0.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DLG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293813    GT:AD:DP:GQ:PL    0/1:17,17:35:97.33:97,0,453
17    7121785    rs2521985    T    C    154.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=17.21;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543245    GT:AD:DP:GQ:PL    0/1:3,6:9:97.08:185,0,97
17    7127718    rs17671352    T    C    166.13    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=12.78;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000005340    GT:AD:DP:GQ:PL    0/1:7,6:13:99:196,0,168
17    7129840    rs35594616    T    C    220.67    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=30;Dels=0.0;FS=3.568;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.091;QD=7.36;ReadPosRankSum=1.403;SNPEFF_AMINO_ACID_CHANGE=Q554;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7129740_7129958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005340    GT:AD:DP:GQ:PL    0/1:21,9:30:99:251,0,590
17    7129974    rs2074222    A    G    181.71    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DB;DP=15;Dels=0.0;FS=2.246;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=1.524;QD=12.11;ReadPosRankSum=0.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322910    GT:AD:DP:GQ:PL    0/1:8,7:15:99:212,0,237
17    7132192    rs72839770    C    T    72.27    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=5.56;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACADVL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322910    GT:AD:DP:GQ:PL    0/1:8,5:13:99:102,0,262
17    7132556    rs222837    C    T    1106.61    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.505;DB;DP=77;Dels=0.0;FS=9.905;HRun=1;HaplotypeScore=3.2854;MQ=59.04;MQ0=0;MQRankSum=-1.056;QD=14.37;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=Q285;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7132454_7132593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005340    GT:AD:DP:GQ:PL    0/1:36,41:77:99:1137,0,1136
17    7133609    rs2074216    G    A    1452.08    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=3.608;DB;DP=121;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=-0.622;QD=12.0;ReadPosRankSum=-0.344;SNPEFF_AMINO_ACID_CHANGE=S135;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7133604_7133749;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DVL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000005340    GT:AD:DP:GQ:PL    0/1:61,60:121:99:1482,0,1806
17    7134129    rs222835    A    G    589.16    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.719;DB;DP=56;Dels=0.0;FS=1.275;HRun=0;HaplotypeScore=0.8321;MQ=59.59;MQ0=0;MQRankSum=0.221;QD=10.52;ReadPosRankSum=-0.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320316    GT:AD:DP:GQ:PL    0/1:31,25:56:99:619,0,964
17    7139238    rs222851    G    A    4354.31    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=5.539;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7074;MQ=59.82;MQ0=0;MQRankSum=1.969;QD=17.42;ReadPosRankSum=1.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABARAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302386    GT:AD:DP:GQ:PL    0/1:103,147:250:99:4354,0,2639
17    7140606    rs222852    A    G    474.68    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.377;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.723;QD=13.56;ReadPosRankSum=-0.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABARAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302386    GT:AD:DP:GQ:PL    0/1:17,18:35:99:505,0,607
17    7145117    rs11656323    T    C    248.53    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.625;QD=14.62;ReadPosRankSum=-1.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDNEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318988    GT:AD:DP:GQ:PL    0/1:8,9:17:99:279,0,282
17    7145492    rs58574748    C    CA    299.86    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.431;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=34.3041;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=-1.096;QD=19.99;ReadPosRankSum=-0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDNEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318988    GT:AD:DP:GQ:PL    0/1:7,8:15:99:339,0,249
17    7150552    rs2074217    A    G    281.46    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DB;DP=29;Dels=0.0;FS=9.773;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.531;QD=9.71;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDNEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318988    GT:AD:DP:GQ:PL    0/1:18,11:29:99:311,0,573
17    7154534    rs414206    G    A    204.23    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=15.71;ReadPosRankSum=1.256;SNPEFF_AMINO_ACID_CHANGE=L28;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7154514_7154920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDNEP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318988    GT:AD:DP:GQ:PL    0/1:5,8:13:99:234,0,123
17    7156186    rs2074218    A    G    527.99    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=40;Dels=0.0;FS=1.189;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.623;QD=13.2;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354429    GT:AD:DP:GQ:PL    0/1:21,19:40:99:558,0,704
17    7156447    rs2074219    A    G    110.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.73;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354429    GT:AD:DP:GQ:PL    0/1:3,4:7:98.27:140,0,98
17    7158203    rs402514    T    G    56.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.47;QD=5.65;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354429    GT:AD:DP:GQ:PL    0/1:5,5:10:86.47:86,0,176
17    7161767    rs34867349    C    CA    78.52    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=1.766;DB;DP=26;FS=0.0;HRun=16;HaplotypeScore=315.0597;IndelType=I;MQ=50.39;MQ0=0;MQRankSum=-1.06;QD=3.02;ReadPosRankSum=-1.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360325    GT:AD:DP:GQ:PL    0/1:13,5:26:77.53:118,0,78
17    7163739    rs4562    A    G    735.01    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.641;DB;DP=55;Dels=0.0;FS=6.944;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=-1.658;QD=13.36;ReadPosRankSum=-0.766;SNPEFF_AMINO_ACID_CHANGE=V197A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7163223_7163855;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDN7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360325    GT:AD:DP:GQ:PL    0/1:28,27:55:99:765,0,859
17    7187123    rs5435    T    C    556.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=29.31;SNPEFF_AMINO_ACID_CHANGE=N120;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7187057_7187181;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424875    GT:AD:DP:GQ:PL    1/1:0,19:19:45.14:590,45,0
17    7192091    rs222842    C    T    316.69    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.606;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;MQRankSum=1.184;QD=12.67;ReadPosRankSum=0.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317370    GT:AD:DP:GQ:PL    0/1:12,13:25:99:347,0,353
17    7192198    rs222841    T    G    129.90    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=9.28;ReadPosRankSum=-1.768;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317370    GT:AD:DP:GQ:PL    0/1:4,10:14:99:160,0,127
17    7193055    rs111420232    GA    G    445.67    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=4.684;DB;DP=35;FS=6.576;HRun=2;HaplotypeScore=176.7129;IndelType=D;MQ=60.92;MQ0=0;MQRankSum=-0.494;QD=12.73;ReadPosRankSum=-2.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317370    GT:AD:DP:GQ:PL    0/1:19,16:35:99:485,0,627
17    7193060    rs55781423    A    G    373.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=33;Dels=0.0;FS=10.328;HRun=2;HaplotypeScore=0.0;MQ=60.65;MQ0=0;MQRankSum=0.021;QD=11.33;ReadPosRankSum=-1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317370    GT:AD:DP:GQ:PL    0/1:18,15:33:99:404,0,502
17    7193255    rs3744405    G    A    112.26    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.041;DB;DP=20;Dels=0.0;FS=4.775;HRun=0;HaplotypeScore=1.6208;MQ=56.17;MQ0=0;MQRankSum=0.454;QD=5.61;ReadPosRankSum=1.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317370    GT:AD:DP:GQ:PL    0/1:14,6:20:99:142,0,426
17    7193448    rs222838    A    G    1231.86    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.032;DB;DP=67;Dels=0.0;FS=1.412;HRun=1;HaplotypeScore=0.5784;MQ=59.66;MQ0=0;MQRankSum=-0.195;QD=18.39;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317370    GT:AD:DP:GQ:PL    0/1:30,37:67:99:1262,0,970
17    7194261    rs1634382    A    G    106.34    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=8.86;ReadPosRankSum=-1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317370    GT:AD:DP:GQ:PL    0/1:7,5:12:99:136,0,254
17    7214824    rs11658072    C    T    1901.11    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=116;Dels=0.0;FS=3.451;HRun=2;HaplotypeScore=0.9578;MQ=59.45;MQ0=0;MQRankSum=0.201;QD=16.39;ReadPosRankSum=-1.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355068    GT:AD:DP:GQ:PL    0/1:50,66:116:99:1931,0,1539
17    7225425    rs2062771    T    C    514.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEURL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315614    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:548,45,0
17    7245371    rs4796407    A    G    283.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DB;DP=42;Dels=0.0;FS=3.022;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.347;QD=6.75;ReadPosRankSum=-0.734;SNPEFF_AMINO_ACID_CHANGE=P72;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7245267_7245386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:28,14:42:99:314,0,909
17    7245506    rs62059223    C    G    585.37    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=37;Dels=0.0;FS=7.36;HRun=0;HaplotypeScore=0.9469;MQ=59.38;MQ0=0;MQRankSum=-1.686;QD=15.82;ReadPosRankSum=-0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:18,19:37:99:615,0,525
17    7245674    rs8069505    G    A    1004.17    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=3.489;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.22;MQ0=0;MQRankSum=0.657;QD=17.02;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:24,34:58:99:1034,0,657
17    7246851    rs3809828    C    T    409.50    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.479;DB;DP=39;Dels=0.0;FS=2.873;HRun=0;HaplotypeScore=1.6229;MQ=60.0;MQ0=0;MQRankSum=1.377;QD=10.5;ReadPosRankSum=0.758;SNPEFF_AMINO_ACID_CHANGE=Y166;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7246698_7246881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:23,15:39:99:439,0,703
17    7246940    rs3809829    T    G    2687.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.72;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2720,229,0
17    7251159    rs72840986    C    T    272.90    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.9332;MQ=57.23;MQ0=0;MQRankSum=0.241;QD=16.05;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:8,9:17:99:303,0,248
17    7251605    rs2292066    G    C    411.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=37.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:444,33,0
17    7252148    rs2292067    G    T    426.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:460,33,0
17    7258481    rs72840988    C    T    41.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.39;ReadPosRankSum=-1.231;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_7258442_7258692;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM95;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389982    GT:AD:DP:GQ:PL    0/1:2,3:5:71.95:72,0,74
17    7258861    rs9895595    C    A    131.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=2.808;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=14.67;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:4,5:9:96.60:162,0,97
17    7259073    rs6503016    C    T    241.25    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.614;DB;DP=24;Dels=0.0;FS=5.969;HRun=1;HaplotypeScore=8.9695;MQ=60.0;MQ0=0;MQRankSum=0.094;QD=10.05;ReadPosRankSum=0.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:14,10:24:99:271,0,487
17    7259083    .    A    AG    506.77    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.977;DP=35;FS=0.0;HRun=4;HaplotypeScore=127.2173;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=0.579;QD=14.48;ReadPosRankSum=-0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:20,15:35:99:546,0,540
17    7259668    rs3744406    T    C    516.41    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=3.012;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.128;QD=13.24;ReadPosRankSum=0.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000158762    GT:AD:DP:GQ:PL    0/1:23,16:39:99:546,0,748
17    7286326    rs1554948    T    A    635.03    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.03;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.451;QD=12.96;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=L27;SNPEFF_CODON_CHANGE=ctT/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7286155_7286408;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311668    GT:AD:DP:GQ:PL    0/1:26,23:49:99:665,0,845
17    7290787    rs5819155    TG    T    311.46    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=3.529;DB;DP=29;FS=9.455;HRun=2;HaplotypeScore=89.4675;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=10.74;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324822    GT:AD:DP:GQ:PL    0/1:17,12:29:99:350,0,570
17    7290821    rs968580    T    C    95.76    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=2.881;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=7.37;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324822    GT:AD:DP:GQ:PL    0/1:8,5:13:99:126,0,256
17    7292107    rs6503018    G    A    510.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=V593M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7292107_7292202;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311668    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:544,42,0
17    7293715    rs3744549    C    T    106.74    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.35;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=V293I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7293055_7293760;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324822    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:137,0,26
17    7297452    rs4613118    A    G    540.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.522;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.48;MQ0=0;MQRankSum=-0.352;QD=12.29;ReadPosRankSum=-0.838;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_7297423_7297590;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLSCR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324822    GT:AD:DP:GQ:PL    0/1:22,22:44:99:571,0,566
17    7317647    rs79697127    A    AC    820.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=4;HaplotypeScore=52.9052;IndelType=I;MQ=60.49;MQ0=0;QD=37.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302926    GT:AD:DP:GQ:PL    1/1:1,21:22:63.21:862,63,0
17    7318396    rs2241233    C    T    583.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_AMINO_ACID_CHANGE=S322;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7318275_7318467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302926    GT:AD:DP:GQ:PL    1/1:0,18:19:48.15:617,48,0
17    7318559    rs6503019    G    A    129.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302926    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
17    7318935    rs12947017    C    T    846.53    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=58;Dels=0.0;FS=2.346;HRun=0;HaplotypeScore=2.71;MQ=59.6;MQ0=0;MQRankSum=1.017;QD=14.6;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=G381;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7318830_7319426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302926    GT:AD:DP:GQ:PL    0/1:28,30:58:99:877,0,750
17    7324094    rs111604078    G    A    929.22    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=75;Dels=0.0;FS=4.915;HRun=0;HaplotypeScore=0.8321;MQ=59.69;MQ0=0;MQRankSum=-1.672;QD=12.39;ReadPosRankSum=3.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302926    GT:AD:DP:GQ:PL    0/1:42,31:75:99:959,0,1178
17    7329632    rs13290    T    G    864.64    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.639;DB;DP=84;Dels=0.0;FS=1.98;HRun=0;HaplotypeScore=1.6624;MQ=58.95;MQ0=0;MQRankSum=0.645;QD=10.29;ReadPosRankSum=0.049;SNPEFF_AMINO_ACID_CHANGE=S108A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7329507_7330884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333870    GT:AD:DP:GQ:PL    0/1:43,37:84:99:895,0,1132
17    7345819    rs4151129    A    AGGTAC    1419.77    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.04;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=153.8936;IndelType=I;MQ=52.42;MQ0=0;MQRankSum=-2.558;QD=39.44;ReadPosRankSum=-1.832;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM102;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323206    GT:AD:DP:GQ:PL    0/1:22,10:36:99:1459,0,923
17    7346302    rs3853818    T    C    90.11    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=6.44;ReadPosRankSum=-1.909;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293829    GT:AD:DP:GQ:PL    0/1:10,4:14:99:120,0,345
17    7348625    rs17856697    A    G    67.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=11.26;ReadPosRankSum=1.537;SNPEFF_AMINO_ACID_CHANGE=E32G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7348589_7348728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306071    GT:AD:DP:GQ:PL    0/1:3,3:6:86.51:98,0,87
17    7350544    rs2302767    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293829    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
17    7358803    rs7214344    G    A    1661.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311403    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1695,129,0
17    7358861    rs2302762    T    C    159.95    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.151;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.251;QD=9.41;ReadPosRankSum=-0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311403    GT:AD:DP:GQ:PL    0/1:11,6:17:99:190,0,398
17    7358930    rs56074046    G    A    67.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.49;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311403    GT:AD:DP:GQ:PL    0/1:2,3:5:70.19:97,0,70
17    7360110    rs2302764    T    C    207.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.67;QD=14.79;ReadPosRankSum=1.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311403    GT:AD:DP:GQ:PL    0/1:7,7:14:99:237,0,235
17    7367365    rs3867593    G    A    211.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311403    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
17    7385174    rs8065577    G    C    159.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412468    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
17    7386055    rs4491591    C    T    1695.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.6198;MQ=43.59;MQ0=5;QD=26.91;SNPEFF_AMINO_ACID_CHANGE=P251L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7385307_7386383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412468    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1728,141,0
17    7386090    rs7209977    G    A    410.07    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=65;Dels=0.0;FS=2.668;HRun=0;HaplotypeScore=1.612;MQ=47.13;MQ0=5;MQRankSum=-4.841;QD=6.31;ReadPosRankSum=-0.105;SNPEFF_AMINO_ACID_CHANGE=A263T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7385307_7386383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412468    GT:AD:DP:GQ:PL    0/1:34,31:65:99:440,0,897
17    7386217    .    T    C    121.18    QDFilter2    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8234;MQ=45.23;MQ0=6;MQRankSum=-5.159;QD=1.59;ReadPosRankSum=-0.244;SNPEFF_AMINO_ACID_CHANGE=V305A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7385307_7386383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412468    GT:AD:DP:GQ:PL    0/1:53,23:76:99:151,0,1564
17    7386279    rs7219992    T    C    900.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.533;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.85;MQ0=2;MQRankSum=2.025;QD=24.33;ReadPosRankSum=1.528;SNPEFF_AMINO_ACID_CHANGE=W326R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7385307_7386383;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412468    GT:AD:DP:GQ:PL    1/1:3,34:37:50.81:933,51,0
17    7386280    rs7214088    G    A    931.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.695;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.61;MQ0=2;MQRankSum=2.013;QD=25.88;ReadPosRankSum=1.72;SNPEFF_AMINO_ACID_CHANGE=W326*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_7385307_7386383;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000412468    GT:AD:DP:GQ:PL    1/1:3,33:36:50.82:965,51,0
17    7386428    rs11078680    G    A    109.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.22;MQ0=0;QD=27.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412468    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:142,12,0
17    7400041    rs9890920    C    T    1429.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.775;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1463,114,0
17    7400137    rs9898024    T    C    993.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_AMINO_ACID_CHANGE=L154;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7400083_7400364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535204    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1026,75,0
17    7400815    rs2228128    T    C    437.83    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.098;DB;DP=41;Dels=0.0;FS=4.677;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=1.477;QD=10.68;ReadPosRankSum=-1.216;SNPEFF_AMINO_ACID_CHANGE=N276;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7400675_7400836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535204    GT:AD:DP:GQ:PL    0/1:19,22:41:99:468,0,601
17    7401335    rs111845660    G    GGCTCTGGGGT    3739.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=151.6835;IndelType=I;MQ=33.83;MQ0=0;QD=143.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:6,16:26:78.26:3739,78,0
17    7401572    rs41554719    A    T    280.31    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.77;MQ0=0;MQRankSum=-1.373;QD=13.35;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    0/1:11,10:21:99:310,0,319
17    7401690    rs7225446    T    C    132.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
17    7402556    rs2277638    G    A    1147.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1181,90,0
17    7402600    rs2228129    T    C    1116.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.34;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=S443;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7402600_7402810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535204    GT:AD:DP:GQ:PL    1/1:0,34:35:93.22:1149,93,0
17    7403942    rs12936464    A    C    892.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:925,69,0
17    7404107    rs7217707    T    C    1530.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=S563;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7403958_7404167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535204    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1564,120,0
17    7404209    rs6503030    G    A    1160.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=37.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,31:31:90.28:1194,90,0
17    7404991    rs2228130    T    C    2257.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_AMINO_ACID_CHANGE=N720;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7404845_7405048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535204    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2290,169,0
17    7405074    rs8075218    C    T    976.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,27:27:75.23:1010,75,0
17    7406134    rs11658168    A    G    131.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
17    7406343    rs9890028    T    C    155.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:189,15,0
17    7411447    rs11078685    C    T    84.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
17    7411455    rs3826440    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    7412212    rs9889368    A    G    2230.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2263,166,0
17    7412403    rs2228133    T    C    220.02    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.231;QD=7.86;ReadPosRankSum=0.643;SNPEFF_AMINO_ACID_CHANGE=F101;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7412263_7412509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545644    GT:AD:DP:GQ:PL    0/1:18,10:28:99:250,0,660
17    7413038    rs2269459    A    G    124.58    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.461;QD=10.38;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    0/1:7,5:12:99:155,0,228
17    7413057    rs7213878    C    T    193.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=27.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:226,18,0
17    7413120    rs7218412    A    G    32.55    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.61;MQ0=0;MQRankSum=0.736;QD=10.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:63,0,24
17    7414302    rs8080503    A    T    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
17    7414958    rs2071502    G    C    143.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322644    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:177,15,0
17    7416683    rs9894023    A    G    846.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=27.31;SNPEFF_AMINO_ACID_CHANGE=S1656;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7416340_7417933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535204    GT:AD:DP:GQ:PL    1/1:0,31:31:81.16:880,81,0
17    7417086    rs4344809    G    A    6720.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=194;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.7807;MQ=59.4;MQ0=0;QD=34.64;SNPEFF_AMINO_ACID_CHANGE=A1791T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7416340_7417933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535204    GT:AD:DP:GQ:PL    1/1:1,193:194:99:6720,521,0
17    7417551    rs9533    T    C    336.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545644    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:370,33,0
17    7453505    rs62059804    C    A    1498.87    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.573;DB;DP=108;Dels=0.0;FS=3.149;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.369;QD=13.88;ReadPosRankSum=0.215;SNPEFF_AMINO_ACID_CHANGE=R92;SNPEFF_CODON_CHANGE=cgC/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7453437_7453512;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF12-TNFSF13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293826    GT:AD:DP:GQ:PL    0/1:55,53:108:99:1529,0,1498
17    7460517    rs3803798    G    C    531.62    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=3.151;DB;DP=34;Dels=0.0;FS=3.247;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.127;QD=15.64;ReadPosRankSum=0.346;SNPEFF_AMINO_ACID_CHANGE=A200;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7460416_7461207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293825    GT:AD:DP:GQ:PL    0/1:15,19:34:99:562,0,409
17    7460559    rs4968189    T    G    1178.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_AMINO_ACID_CHANGE=G214;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7460416_7461207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293825    GT:AD:DP:GQ:PL    1/1:0,35:35:93.29:1212,93,0
17    7460685    rs1128963    G    A    437.59    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.407;DB;DP=35;Dels=0.0;FS=3.82;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=-0.679;QD=12.5;ReadPosRankSum=1.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462619    GT:AD:DP:GQ:PL    0/1:19,16:35:99:468,0,555
17    7462969    rs3803800    A    G    1080.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=N176S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7462941_7463019;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF12-TNFSF13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293826    GT:AD:DP:GQ:PL    1/1:0,31:31:84.26:1113,84,0
17    7468216    rs4968212    T    C    1498.72    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=3.343;DB;DP=100;Dels=0.0;FS=5.683;HRun=1;HaplotypeScore=0.9832;MQ=59.81;MQ0=0;MQRankSum=-1.831;QD=14.99;ReadPosRankSum=0.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF12-TNFSF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293826    GT:AD:DP:GQ:PL    0/1:49,51:100:99:1529,0,1602
17    7468688    rs8068222    G    T    116.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;MQRankSum=0.884;QD=7.28;ReadPosRankSum=-1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF12-TNFSF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293826    GT:AD:DP:GQ:PL    0/1:10,6:16:99:147,0,286
17    7470285    rs66811745    CA    C    1174.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=3;HaplotypeScore=87.6305;IndelType=D;MQ=60.6;MQ0=0;QD=34.54;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000429205    GT:AD:DP:GQ:PL    1/1:1,33:34:99:1217,99,0
17    7473457    rs4602096    C    A    128.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321337    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
17    7474277    rs4968213    C    T    997.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321337    GT:AD:DP:GQ:PL    1/1:1,34:35:78.25:1030,78,0
17    7474539    rs28625968    C    T    174.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=17.44;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321337    GT:AD:DP:GQ:PL    0/1:4,6:10:99:204,0,135
17    7477477    rs4968214    A    G    69.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.55;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SENP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321337    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,106
17    7477938    rs1057086    G    C    1863.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.47;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=A33;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7477864_7477996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380512    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1897,141,0
17    7480547    rs2270341    T    A    541.72    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.648;DB;DP=33;Dels=0.0;FS=3.192;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=-0.991;QD=16.42;ReadPosRankSum=0.594;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380512    GT:AD:DP:GQ:PL    0/1:16,17:33:99:572,0,496
17    7490379    rs2302661    G    C    320.85    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=19;Dels=0.0;FS=5.528;HRun=0;HaplotypeScore=1.9315;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=16.89;ReadPosRankSum=-2.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250092    GT:AD:DP:GQ:PL    0/1:8,11:19:99:351,0,148
17    7491910    rs7211847    G    A    94.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=13.55;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250113    GT:AD:DP:GQ:PL    0/1:3,4:7:91.70:125,0,92
17    7495378    rs71387972    GTC    G    178.35    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=11;FS=2.808;HRun=0;HaplotypeScore=40.47;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=16.21;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250124    GT:AD:DP:GQ:PL    0/1:5,6:11:99:217,0,183
17    7498191    rs858527    C    T    179.66    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.757;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.8911;MQ=58.13;MQ0=0;MQRankSum=-0.091;QD=7.19;ReadPosRankSum=0.575;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301597    GT:AD:DP:GQ:PL    0/1:18,7:25:99:210,0,638
17    7499382    rs858526    A    G    596.29    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=15.29;ReadPosRankSum=2.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301597    GT:AD:DP:GQ:PL    0/1:21,18:39:99:626,0,711
17    7499502    rs3933469    G    A    64.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=10.72;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPDU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301597    GT:AD:DP:GQ:PL    0/1:3,3:6:94.30:94,0,102
17    7504977    rs12452603    T    C    304.22    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=13.23;ReadPosRankSum=-0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250113    GT:AD:DP:GQ:PL    0/1:9,14:23:99:334,0,295
17    7530147    rs858521    G    C    646.81    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.525;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.366;QD=17.97;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269298    GT:AD:DP:GQ:PL    0/1:16,20:36:99:677,0,512
17    7530271    rs858520    C    T    519.84    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.478;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.284;QD=12.38;ReadPosRankSum=0.038;SNPEFF_AMINO_ACID_CHANGE=P177;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7530261_7530362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380466    GT:AD:DP:GQ:PL    0/1:24,18:42:99:550,0,744
17    7530817    rs147362343    G    A    145.21    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.473;DB;DP=22;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.363;QD=6.6;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269298    GT:AD:DP:GQ:PL    0/1:10,12:22:99:175,0,281
17    7533423    rs1799941    G    A    413.96    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.738;DB;DP=24;Dels=0.0;FS=1.706;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=17.25;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHBG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340624    GT:AD:DP:GQ:PL    0/1:11,13:24:99:444,0,300
17    7534271    rs858517    C    T    361.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.87;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHBG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340624    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:394,30,0
17    7554772    rs1642762    C    T    85.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_7554254_7554948;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250111    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
17    7557419    rs1642763    A    G    6923.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DB;DP=206;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3017;MQ=59.89;MQ0=0;MQRankSum=-0.434;QD=33.61;ReadPosRankSum=0.397;SNPEFF_AMINO_ACID_CHANGE=G132;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7557370_7557575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250111    GT:AD:DP:GQ:PL    1/1:2,204:206:99:6923,493,0
17    7557834    rs1642764    C    T    1242.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1B2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250111    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1276,99,0
17    7578115    rs1625895    T    C    231.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414315    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:264,21,0
17    7578645    rs2909430    C    T    379.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269305    GT:AD:DP:GQ:PL    1/1:0,11:12:30.10:412,30,0
17    7579472    rs1042522    G    C    3050.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=57.72;MQ0=0;QD=29.62;SNPEFF_AMINO_ACID_CHANGE=P72R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7579312_7579590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269305    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3084,256,0
17    7579643    rs17878362    CCCCCAGCCCTCCAGGT    C    4550.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;FS=0.0;HRun=0;HaplotypeScore=1173.8998;IndelType=D;MQ=48.85;MQ0=0;QD=54.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269305    GT:AD:DP:GQ:PL    1/1:41,43:84:99:4550,129,0
17    7579801    rs1642785    G    C    687.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;DB;DP=27;Dels=0.0;FS=3.736;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.333;QD=25.47;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269305    GT:AD:DP:GQ:PL    1/1:1,26:27:33.93:721,34,0
17    7612341    .    C    T    104.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.63;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226091    GT:AD:DP:GQ:PL    0/1:5,4:9:99:135,0,175
17    7621943    rs3744260    G    A    140.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=12.81;ReadPosRankSum=0.143;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000082259    GT:AD:DP:GQ:PL    0/1:6,5:11:99:171,0,218
17    7622209    rs3744259    G    A    141.78    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=20.25;ReadPosRankSum=-1.495;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000082259    GT:AD:DP:GQ:PL    0/1:2,5:7:63.81:172,0,64
17    7630295    rs2642157    G    T    111.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000082259    GT:AD:DP:GQ:PL    0/1:2,4:6:65.93:141,0,66
17    7630365    rs34219250    C    T    304.36    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.197;QD=16.02;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000082259    GT:AD:DP:GQ:PL    0/1:8,11:19:99:334,0,277
17    7673928    rs9909288    C    G    776.09    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.268;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4533;MQ=60.0;MQ0=0;MQRankSum=0.5;QD=11.09;ReadPosRankSum=-0.315;SNPEFF_AMINO_ACID_CHANGE=P1384;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7673875_7673957;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:38,32:70:99:806,0,1339
17    7674850    rs7212989    C    T    65.02    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.91;ReadPosRankSum=-1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:7,4:11:95.02:95,0,222
17    7674913    rs9889453    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
17    7677927    rs4791759    A    G    112.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
17    7680322    rs9303221    C    T    168.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
17    7681412    rs7359662    C    G    1440.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.99;MQ0=0;QD=31.32;SNPEFF_AMINO_ACID_CHANGE=V1755;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7681395_7681498;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1474,111,0
17    7682605    rs17806045    C    T    192.31    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.858;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.069;QD=6.63;ReadPosRankSum=-0.344;SNPEFF_AMINO_ACID_CHANGE=I1862;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7682561_7682741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:19,10:29:99:222,0,569
17    7690404    rs72840094    G    A    153.87    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=1.7552;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=19.23;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:3,5:8:60.48:184,0,60
17    7697412    rs9903135    A    G    257.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=32.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:291,21,0
17    7700303    rs111683614    C    T    107.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=54.56;MQ0=0;MQRankSum=1.221;QD=11.99;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:3,6:9:99:138,0,103
17    7700712    rs1565817    C    T    2232.73    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=0.002;DB;DP=149;Dels=0.0;FS=8.578;HRun=0;HaplotypeScore=3.6824;MQ=59.54;MQ0=0;MQRankSum=0.366;QD=14.98;ReadPosRankSum=0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:73,75:149:99:2263,0,2211
17    7701204    rs8072174    A    G    563.14    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.889;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.98;MQ0=0;MQRankSum=0.719;QD=13.74;ReadPosRankSum=-0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:22,19:41:99:593,0,741
17    7701806    rs2131810    C    T    264.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=21;Dels=0.0;FS=2.141;HRun=1;HaplotypeScore=1.8255;MQ=59.11;MQ0=0;MQRankSum=0.462;QD=12.61;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:12,9:21:99:295,0,368
17    7702126    rs138048200    GCACACCCCCACTGC    G    891.75    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=4.128;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=346.5827;IndelType=D;MQ=52.32;MQ0=0;MQRankSum=-2.8;QD=30.75;ReadPosRankSum=-0.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:18,11:29:99:931,0,2149
17    7702357    rs12949280    C    T    492.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:525,39,0
17    7705089    rs4791834    C    G    421.42    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.397;DB;DP=36;Dels=0.0;FS=1.356;HRun=0;HaplotypeScore=3.6868;MQ=58.71;MQ0=0;MQRankSum=-0.604;QD=11.71;ReadPosRankSum=1.432;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:19,17:36:99:451,0,512
17    7705344    rs8073196    G    C    256.88    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.432;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.2;MQ0=0;MQRankSum=1.616;QD=8.86;ReadPosRankSum=1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:17,12:29:99:287,0,586
17    7705410    rs8073332    G    T    141.11    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.52;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:1,5:6:24.60:171,0,25
17    7707839    rs56187054    C    T    150.88    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:1,5:6:18.07:181,0,18
17    7708096    rs9889268    G    A    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
17    7711126    rs7221056    C    T    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
17    7720091    rs11078708    G    C    450.95    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=27;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.716;QD=16.7;ReadPosRankSum=-0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:11,16:27:99:481,0,302
17    7721199    rs148024366    GC    G    710.59    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=4.176;DB;DP=66;FS=1.158;HRun=8;HaplotypeScore=200.1926;IndelType=D;MQ=60.31;MQ0=0;MQRankSum=1.118;QD=10.77;ReadPosRankSum=0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:34,32:66:99:750,0,799
17    7721542    rs1105813    G    A    549.47    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.085;DB;DP=41;Dels=0.0;FS=6.293;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.141;QD=13.4;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:22,19:41:99:579,0,718
17    7722365    rs7213894    C    T    538.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=T3561I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7722237_7722381;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:572,42,0
17    7726612    rs71388001    C    CA    72.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=16;FS=0.0;HRun=16;HaplotypeScore=142.054;IndelType=I;MQ=52.32;MQ0=0;MQRankSum=1.276;QD=4.51;ReadPosRankSum=1.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:4,6:16:25.48:111,0,25
17    7726665    rs71389703    C    CAGAG    555.91    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.636;DB;DP=36;FS=3.979;HRun=0;HaplotypeScore=267.3958;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=-0.693;QD=15.44;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:25,9:36:99:595,0,625
17    7728246    rs2279621    C    G    134.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
17    7733555    rs7405476    A    G    550.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.71;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:584,51,0
17    7733833    rs34121753    A    G    693.16    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.659;DB;DP=54;Dels=0.0;FS=7.783;HRun=0;HaplotypeScore=0.6651;MQ=58.71;MQ0=0;MQRankSum=-0.806;QD=12.84;ReadPosRankSum=0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:28,26:54:99:723,0,877
17    7736267    rs149521105    G    A    1992.10    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=135;DS;Dels=0.0;FS=2.328;HRun=0;HaplotypeScore=1.7338;MQ=59.83;MQ0=0;MQRankSum=-0.719;QD=14.76;ReadPosRankSum=-0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360606    GT:AD:DP:GQ:PL    0/1:68,67:135:99:2022,0,2334
17    7749954    rs60738318    C    G    874.67    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=69;Dels=0.0;FS=4.927;HRun=0;HaplotypeScore=2.8226;MQ=58.99;MQ0=0;MQRankSum=2.289;QD=12.68;ReadPosRankSum=-0.558;SNPEFF_AMINO_ACID_CHANGE=P203A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7749897_7750058;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:33,36:69:99:905,0,913
17    7750232    rs11078709    T    C    95.86    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.535;DB;DP=21;Dels=0.0;FS=7.656;HRun=1;HaplotypeScore=1.2434;MQ=50.81;MQ0=0;MQRankSum=-0.833;QD=4.56;ReadPosRankSum=1.359;SNPEFF_AMINO_ACID_CHANGE=A269;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7750137_7750334;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:13,8:21:99:126,0,356
17    7750357    rs56880362    T    C    651.08    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.418;DB;DP=72;Dels=0.0;FS=6.89;HRun=1;HaplotypeScore=1.6553;MQ=59.68;MQ0=0;MQRankSum=0.088;QD=9.04;ReadPosRankSum=-2.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:44,28:72:99:681,0,1362
17    7750847    rs2270517    T    C    157.97    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.807;DB;DP=23;Dels=0.0;FS=1.74;HRun=2;HaplotypeScore=0.0;MQ=55.86;MQ0=0;MQRankSum=0.32;QD=6.87;ReadPosRankSum=-1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:12,11:23:99:188,0,327
17    7750936    rs73233606    A    G    73.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.72;QD=10.5;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=S444G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7750864_7753046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:2,5:7:66.83:103,0,67
17    7751531    .    C    T    944.87    PASS    AB=0.279;AC=1;AF=0.50;AN=2;BaseQRankSum=2.369;DP=43;Dels=0.0;FS=7.748;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.42;QD=21.97;ReadPosRankSum=-0.88;SNPEFF_AMINO_ACID_CHANGE=P642L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7750864_7753046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:12,31:43:99:975,0,297
17    7751778    rs3744249    G    A    1094.05    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.271;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6935;MQ=59.01;MQ0=0;MQRankSum=-0.392;QD=12.29;ReadPosRankSum=1.105;SNPEFF_AMINO_ACID_CHANGE=P724;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7750864_7753046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:45,43:89:99:1124,0,1349
17    7752397    rs147901991    A    G    159.54    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=16;Dels=0.0;FS=2.158;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=9.97;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S931G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7750864_7753046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:9,7:16:99:190,0,254
17    7754993    rs12939056    G    A    61.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.86;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=L1348;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7754966_7755114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:6,3:9:91.72:92,0,186
17    7755732    rs3736305    G    A    418.24    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.622;DB;DP=25;Dels=0.0;FS=7.401;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.058;QD=16.73;ReadPosRankSum=-0.985;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333775    GT:AD:DP:GQ:PL    0/1:11,14:25:99:448,0,289
17    7756211    rs145011153    G    A    184.06    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=21;Dels=0.0;FS=8.822;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.485;QD=8.76;ReadPosRankSum=0.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333775    GT:AD:DP:GQ:PL    0/1:13,8:21:99:214,0,461
17    7758746    rs8065467    C    T    288.28    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=28;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.22;QD=10.3;ReadPosRankSum=-0.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254846    GT:AD:DP:GQ:PL    0/1:15,13:28:99:318,0,515
17    7760397    rs4724    G    A    1239.66    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.815;DB;DP=114;Dels=0.0;FS=6.697;HRun=2;HaplotypeScore=1.786;MQ=59.6;MQ0=0;MQRankSum=0.978;QD=10.87;ReadPosRankSum=0.709;SNPEFF_AMINO_ACID_CHANGE=F115;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7760333_7761172;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSMD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333775    GT:AD:DP:GQ:PL    0/1:66,47:114:99:1270,0,1797
17    7760704    rs8522    A    G    964.97    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.4;DB;DP=74;Dels=0.0;FS=0.913;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=13.04;ReadPosRankSum=0.118;SNPEFF_AMINO_ACID_CHANGE=L13P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7760333_7761172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSMD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333775    GT:AD:DP:GQ:PL    0/1:35,39:74:99:995,0,988
17    7761512    rs12453250    C    A    707.85    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.683;DB;DP=55;Dels=0.0;FS=1.035;HRun=1;HaplotypeScore=2.5793;MQ=59.58;MQ0=0;MQRankSum=-0.126;QD=12.87;ReadPosRankSum=0.683;SNPEFF_AMINO_ACID_CHANGE=F20L;SNPEFF_CODON_CHANGE=ttC/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7761064_7761612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332439    GT:AD:DP:GQ:PL    0/1:29,26:55:99:738,0,800
17    7776581    rs8078725    A    G    901.59    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=54;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=0.9987;MQ=59.57;MQ0=0;MQRankSum=1.368;QD=16.7;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541486    GT:AD:DP:GQ:PL    0/1:22,32:54:99:932,0,592
17    7777041    rs11078710    C    A    792.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.582;DB;DP=50;Dels=0.0;FS=6.078;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.058;QD=15.85;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541486    GT:AD:DP:GQ:PL    0/1:25,25:50:99:822,0,711
17    7794202    rs12450454    C    G    962.48    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.524;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9958;MQ=59.11;MQ0=0;MQRankSum=0.822;QD=13.18;ReadPosRankSum=0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330494    GT:AD:DP:GQ:PL    0/1:37,36:73:99:992,0,1034
17    7796815    rs150799852    G    C    132.01    HaplotypeScoreFilter13;QDFilter2    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.517;DB;DP=79;Dels=0.0;FS=33.294;HRun=6;HaplotypeScore=27.8439;MQ=42.07;MQ0=0;MQRankSum=-4.612;QD=1.67;ReadPosRankSum=3.842;SNPEFF_AMINO_ACID_CHANGE=A241P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_7796604_7796887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330494    GT:AD:DP:GQ:PL    0/1:46,33:79:99:162,0,799
17    7806529    rs7222046    A    G    239.34    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=22;Dels=0.0;FS=6.662;HRun=0;HaplotypeScore=0.8667;MQ=52.17;MQ0=0;MQRankSum=0.532;QD=10.88;ReadPosRankSum=-0.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330494    GT:AD:DP:GQ:PL    0/1:12,10:22:99:269,0,322
17    7811998    rs4239111    T    C    3870.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.8739;MQ=59.32;MQ0=0;QD=28.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466233    GT:AD:DP:GQ:PL    1/1:0,136:136:99:3871,319,0
17    7852887    rs7217194    T    G    225.86    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=20.53;ReadPosRankSum=1.663;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTROB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380255    GT:AD:DP:GQ:PL    0/1:4,7:11:99:256,0,134
17    7942434    rs73972649    A    G    288.01    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.071;DB;DP=24;Dels=0.0;FS=4.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.579;QD=12.0;ReadPosRankSum=0.232;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_7942358_7942620;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339694    GT:AD:DP:GQ:PL    0/1:11,13:24:99:318,0,311
17    7945593    rs7503115    G    T    263.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=22;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.76;QD=11.99;ReadPosRankSum=-1.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339694    GT:AD:DP:GQ:PL    0/1:11,11:22:99:294,0,312
17    7950826    rs138084644    C    T    198.97    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=12.44;ReadPosRankSum=-1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339694    GT:AD:DP:GQ:PL    0/1:9,7:16:99:229,0,282
17    7977105    rs12937410    A    G    102.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.05;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319144    GT:AD:DP:GQ:PL    0/1:2,4:6:64.94:132,0,65
17    7978751    rs6503075    G    A    100.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.56;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319144    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,131
17    7979463    rs2289586    A    G    591.46    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.87;DB;DP=51;Dels=0.0;FS=2.911;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.225;QD=11.6;ReadPosRankSum=1.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319144    GT:AD:DP:GQ:PL    0/1:28,23:51:99:621,0,803
17    7990437    rs3027307    G    A    112.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOX12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319144    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:145,12,0
17    8014563    rs3027210    C    T    250.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOXE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318227    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:283,21,0
17    8015579    rs894505    G    C    868.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.091;QD=32.16;ReadPosRankSum=0.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALOXE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318227    GT:AD:DP:GQ:PL    1/1:1,26:27:72.21:901,72,0
17    8019125    rs3027218    C    T    75.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.66;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HES7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317814    GT:AD:DP:GQ:PL    0/1:3,3:6:53.48:106,0,53
17    8027318    rs1372869    A    G    214.70    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.651;DB;DP=26;Dels=0.0;FS=5.969;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.651;QD=8.26;ReadPosRankSum=-0.991;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HES7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317814    GT:AD:DP:GQ:PL    0/1:17,9:26:99:245,0,453
17    8027593    rs3027279    G    T    60.25    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=12.05;ReadPosRankSum=-0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HES7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317814    GT:AD:DP:GQ:PL    0/1:1,4:5:30.21:90,0,30
17    8027644    rs1372868    G    A    88.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HES7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317814    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
17    8045060    rs55822222    CT    C    385.46    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=3.586;DB;DP=42;FS=0.0;HRun=6;HaplotypeScore=127.5433;IndelType=D;MQ=52.57;MQ0=0;MQRankSum=2.607;QD=9.18;ReadPosRankSum=0.807;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354903    GT:AD:DP:GQ:PL    0/1:25,17:42:99:424,0,833
17    8046772    rs2585405    C    G    274.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=A962P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8046584_8047194;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317276    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:307,24,0
17    8048169    rs2253820    T    C    351.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_AMINO_ACID_CHANGE=T771;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8047507_8048311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354903    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:385,30,0
17    8048283    rs2735611    G    A    547.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=36.52;SNPEFF_AMINO_ACID_CHANGE=G733;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8047507_8048311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PER1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354903    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:581,45,0
17    8051639    rs10462024    A    G    63.54    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=5.78;ReadPosRankSum=1.931;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VAMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498285    GT:AD:DP:GQ:PL    0/1:8,3:11:93.54:94,0,261
17    8052363    rs2518026    T    C    90.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.25;MQ0=1;QD=15.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VAMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498285    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:123,9,0
17    8052525    rs147233293    CAAAAACA    C    3785.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DB;DP=67;FS=7.715;HRun=0;HaplotypeScore=532.0232;IndelType=D;MQ=50.62;MQ0=0;MQRankSum=-0.293;QD=54.87;ReadPosRankSum=1.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VAMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498285    GT:AD:DP:GQ:PL    1/1:4,65:67:99:3786,162,0
17    8062583    rs1150    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VAMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404970    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    8064083    rs1061032    T    G    743.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VAMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481878    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:777,60,0
17    8076655    rs3202848    C    T    390.81    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.128;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=1.659;QD=15.63;ReadPosRankSum=1.605;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316425    GT:AD:DP:GQ:PL    0/1:12,13:25:99:421,0,405
17    8076778    rs9894790    C    T    1517.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316425    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1551,114,0
17    8076796    .    T    C    463.77    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DP=44;Dels=0.0;FS=1.202;HRun=0;HaplotypeScore=1.5782;MQ=58.41;MQ0=0;MQRankSum=-0.377;QD=10.54;ReadPosRankSum=-0.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316425    GT:AD:DP:GQ:PL    0/1:23,21:44:99:494,0,728
17    8076802    rs9901637    T    A    1423.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3121;MQ=58.48;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316425    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1456,114,0
17    8076911    rs11655582    A    G    1018.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316425    GT:AD:DP:GQ:PL    1/1:0,30:30:78.24:1052,78,0
17    8076916    rs11650713    C    T    939.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM107;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316425    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:972,72,0
17    8079029    rs8064449    G    C    1244.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=58.81;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=S101*;SNPEFF_CODON_CHANGE=tCa/tGa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_8077060_8079175;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM107;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000532998    GT:AD:DP:GQ:PL    1/1:0,39:39:96.26:1278,96,0
17    8092694    rs8531    T    G    250.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.06;SNPEFF_AMINO_ACID_CHANGE=P255;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8091652_8093564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf59;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389017    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:284,24,0
17    8107979    rs7503353    G    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316199    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    8108331    rs1059476    A    G    622.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_AMINO_ACID_CHANGE=M257T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8108061_8108362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534871    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:655,48,0
17    8108339    rs2241909    G    A    575.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_AMINO_ACID_CHANGE=S254;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8108061_8108362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534871    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:609,45,0
17    8110764    rs2289590    C    A    533.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316199    GT:AD:DP:GQ:PL    1/1:0,16:16:45.10:566,45,0
17    8125541    rs12938531    A    G    76.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315684    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
17    8126109    rs1017522    C    A    622.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=25.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315684    GT:AD:DP:GQ:PL    1/1:0,24:24:48.16:656,48,0
17    8132763    rs3826543    T    C    1373.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=28.62;SNPEFF_AMINO_ACID_CHANGE=I1005V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8132620_8132764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315684    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1407,114,0
17    8135061    rs3027238    T    C    1579.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=I785V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8135044_8135133;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449476    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1613,126,0
17    8139327    rs4791626    A    G    3711.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315684    GT:AD:DP:GQ:PL    1/1:0,120:120:99:3712,286,0
17    8141707    rs6503093    T    C    2903.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4805;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315684    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2937,226,0
17    8157310    rs9891699    C    T    1534.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=P19S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8157177_8157397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1567,117,0
17    8158273    rs6503094    A    G    286.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:320,27,0
17    8159232    rs7221716    A    G    1895.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5359;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1928,147,0
17    8161149    rs4791641    C    T    693.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.89;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=P367L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8161125_8161256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:727,54,0
17    8166091    rs4792700    A    G    199.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
17    8166097    rs4792701    G    C    211.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
17    8166297    rs34939404    G    A    1291.80    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.444;DB;DP=95;Dels=0.0;FS=2.713;HRun=0;HaplotypeScore=2.5584;MQ=60.0;MQ0=0;MQRankSum=-1.241;QD=13.6;ReadPosRankSum=-0.188;SNPEFF_AMINO_ACID_CHANGE=A42T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8166238_8166311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545834    GT:AD:DP:GQ:PL    0/1:47,48:95:99:1322,0,1425
17    8166378    rs7206953    T    C    2533.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2567,196,0
17    8167600    rs11078738    T    C    696.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=L197P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8167530_8167655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545834    GT:AD:DP:GQ:PL    1/1:0,22:22:63.17:729,63,0
17    8168224    rs9902252    T    C    92.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.14;SNPEFF_AMINO_ACID_CHANGE=S263;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8168213_8168443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545834    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
17    8168805    rs9897842    A    G    1658.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1692,138,0
17    8169006    rs11655563    T    C    1158.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1192,90,0
17    8172732    rs12951103    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    8192254    .    T    C    364.38    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.956;DP=32;Dels=0.0;FS=3.254;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.007;QD=11.39;ReadPosRankSum=0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226105    GT:AD:DP:GQ:PL    0/1:18,14:32:99:394,0,559
17    8193473    rs11245    G    A    125.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226105    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
17    8194318    rs72835272    G    A    809.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226105    GT:AD:DP:GQ:PL    1/1:0,32:32:78.18:843,78,0
17    8194319    rs6503098    T    C    784.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226105    GT:AD:DP:GQ:PL    1/1:0,32:32:75.17:818,75,0
17    8197663    rs6416894    T    C    454.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGRF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226105    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:488,36,0
17    8275001    rs2909439    C    T    44.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.82;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396267    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:74,0,24
17    8275023    rs1004151    T    G    33.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=11.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396267    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:63,0,31
17    8283379    rs409445    C    G    216.08    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.14;MQ0=0;MQRankSum=0.546;QD=21.61;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293842    GT:AD:DP:GQ:PL    0/1:3,7:10:55.16:246,0,55
17    8285398    rs422679    T    C    331.57    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.643;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=12.75;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293842    GT:AD:DP:GQ:PL    0/1:14,12:26:99:362,0,495
17    8349984    rs5819193    T    TC    707.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=7;HaplotypeScore=86.8067;IndelType=I;MQ=60.14;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299734    GT:AD:DP:GQ:PL    1/1:2,20:22:63.19:749,63,0
17    8357908    rs1874917    C    T    252.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299734    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
17    8363624    rs3817003    G    A    114.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.07;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299734    GT:AD:DP:GQ:PL    0/1:2,4:6:66.40:144,0,66
17    8378932    rs961    A    G    113.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476737    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:146,12,0
17    8383894    rs6503120    A    G    96.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.21;SNPEFF_AMINO_ACID_CHANGE=T352;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8383783_8383942;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDEL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299734    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:128,9,0
17    8384394    .    CCCTGCGGTGTGCAGGGCTCAGCAGGACTGGCACGGGTGCAGTGCCCGTTAGTGCACACCACGGCTCCCA    C    162.85    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=384.3842;IndelType=D;MQ=55.48;MQ0=0;QD=27.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299734    GT:AD:DP:GQ:PL    1/1:0,6:6:17.99:205,18,0
17    8384875    rs904417    T    G    201.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299734    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:234,18,0
17    8387438    rs113838551    G    GATGA    4604.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=0;HaplotypeScore=216.7755;IndelType=I;MQ=56.78;MQ0=0;QD=73.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299734    GT:AD:DP:GQ:PL    1/1:4,56:63:99:4604,175,0
17    8390655    rs7219356    C    T    642.25    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.655;DB;DP=44;Dels=0.0;FS=6.562;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.822;QD=14.6;ReadPosRankSum=0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:21,23:44:99:672,0,621
17    8390733    rs3826463    A    G    1416.28    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.86;DB;DP=83;Dels=0.0;FS=0.916;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=17.06;ReadPosRankSum=1.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:32,51:83:99:1446,0,898
17    8393900    rs2270744    G    C    548.91    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.393;DB;DP=41;Dels=0.0;FS=1.795;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.014;QD=13.39;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488329    GT:AD:DP:GQ:PL    0/1:20,21:41:99:579,0,658
17    8395894    rs904416    T    C    296.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488329    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:329,27,0
17    8396010    rs3744653    A    G    328.08    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=23;Dels=0.0;FS=2.858;HRun=0;HaplotypeScore=1.7987;MQ=58.99;MQ0=0;MQRankSum=1.545;QD=14.26;ReadPosRankSum=-1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:8,15:23:99:358,0,197
17    8397315    rs2277670    C    T    417.93    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=3.11;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.474;QD=24.58;ReadPosRankSum=-1.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:5,12:17:99:448,0,121
17    8411812    rs11658073    C    T    1793.16    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.044;DB;DP=130;Dels=0.0;FS=3.839;HRun=0;HaplotypeScore=0.9332;MQ=59.86;MQ0=0;MQRankSum=0.092;QD=13.79;ReadPosRankSum=-1.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:67,63:130:99:1823,0,2300
17    8412133    rs9889907    A    G    176    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
17    8413314    rs67578418    CCA    C    396.10    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=269.125;IndelType=D;MQ=52.32;MQ0=0;MQRankSum=-0.769;QD=12.38;ReadPosRankSum=-1.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:18,14:32:99:435,0,525
17    8413380    rs11650834    G    A    126.98    MQFilter40    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.14;MQ0=0;MQRankSum=0.742;QD=18.14;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:1,6:7:15.38:157,0,15
17    8416901    rs11374    C    T    1015.86    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=58.72;MQ0=0;MQRankSum=1.257;QD=14.72;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=T869;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8416856_8416987;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1046,0,989
17    8417006    rs71901496    GT    G    677.79    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=2.861;DB;DP=112;FS=2.868;HRun=13;HaplotypeScore=496.2544;IndelType=D;MQ=59.0;MQ0=0;MQRankSum=0.489;QD=6.05;ReadPosRankSum=0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:61,49:112:99:717,0,919
17    8424270    rs8067456    G    A    1229.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_AMINO_ACID_CHANGE=N702;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8424196_8424317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    1/1:0,33:33:93.28:1262,93,0
17    8424748    rs2277671    A    T    78.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5577;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=15.74;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:1,4:5:24.30:109,0,24
17    8449716    rs71359700    TA    T    48.24    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.191;DB;DP=13;FS=0.0;HRun=12;HaplotypeScore=76.8792;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=-0.259;QD=3.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459986    GT:AD:DP:GQ:PL    0/1:7,6:13:87.27:87,0,147
17    8449767    rs4791724    A    G    705.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.54;MQ0=0;QD=35.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459986    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:739,57,0
17    8451744    rs66963793    GA    G    790.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=10;HaplotypeScore=90.6866;IndelType=D;MQ=61.49;MQ0=0;QD=21.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    1/1:3,33:36:95.98:833,96,0
17    8455532    rs883811    G    A    35.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6624;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=5.13;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472728    GT:AD:DP:GQ:PL    0/1:5,2:7:65.93:66,0,152
17    8464856    rs75198914    G    A    2479.24    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.93;DB;DP=184;Dels=0.0;FS=5.431;HRun=0;HaplotypeScore=4.0688;MQ=54.94;MQ0=0;MQRankSum=1.339;QD=13.47;ReadPosRankSum=2.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:97,87:184:99:2509,0,2669
17    8464890    rs1845589    T    C    4771.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8198;MQ=56.3;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    1/1:0,148:149:99:4771,388,0
17    8464961    rs35840044    TA    T    260.50    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.169;DB;DP=65;FS=7.71;HRun=16;HaplotypeScore=529.107;IndelType=D;MQ=51.17;MQ0=0;MQRankSum=0.997;QD=3.95;ReadPosRankSum=2.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:32,24:65:99:300,0,220
17    8465114    rs1494964    C    A    72.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
17    8473182    rs422173    G    A    324.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.488;DB;DP=27;Dels=0.0;FS=2.02;HRun=0;HaplotypeScore=2.5236;MQ=58.27;MQ0=0;MQRankSum=-0.464;QD=12.03;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269243    GT:AD:DP:GQ:PL    0/1:15,12:27:99:355,0,501
17    8479841    rs1431307    A    C    311.77    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.174;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.543;QD=17.32;ReadPosRankSum=-1.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411957    GT:AD:DP:GQ:PL    0/1:7,11:18:99:342,0,245
17    8639090    rs35350593    T    C    36.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.18;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293845    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:67,0,31
17    8647337    rs7218546    A    G    30.88    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=58.05;MQ0=0;MQRankSum=-0.37;QD=2.57;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293845    GT:AD:DP:GQ:PL    0/1:9,3:12:60.87:61,0,294
17    8647931    rs10852904    G    C    413.63    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.805;DB;DP=28;Dels=0.0;FS=4.407;HRun=0;HaplotypeScore=0.5784;MQ=59.17;MQ0=0;MQRankSum=-1.175;QD=14.77;ReadPosRankSum=-0.839;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_8647845_8648154;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293845    GT:AD:DP:GQ:PL    0/1:10,18:28:99:444,0,307
17    8659680    rs3835150    TGGA    T    3148.33    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=9.193;DB;DP=142;FS=1.407;HRun=0;HaplotypeScore=571.1838;IndelType=D;MQ=58.9;MQ0=0;MQRankSum=-0.466;QD=22.17;ReadPosRankSum=1.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328794    GT:AD:DP:GQ:PL    0/1:72,70:142:99:3187,0,4275
17    8661423    rs72848105    G    A    71.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.3;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPDYE4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328794    GT:AD:DP:GQ:PL    0/1:2,3:5:63.39:101,0,63
17    8701423    rs34184531    A    G    466.40    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=28;Dels=0.0;FS=5.969;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=16.66;ReadPosRankSum=-0.07;SNPEFF_AMINO_ACID_CHANGE=I339T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_8700436_8702667;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD6L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329805    GT:AD:DP:GQ:PL    0/1:12,16:28:99:496,0,409
17    8706451    rs2242375    T    C    162.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.226;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.71;QD=11.63;ReadPosRankSum=0.452;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329805    GT:AD:DP:GQ:PL    0/1:8,6:14:99:193,0,287
17    8706496    rs28537446    C    T    262.16    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.929;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=10.08;ReadPosRankSum=-0.643;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329805    GT:AD:DP:GQ:PL    0/1:14,12:26:99:292,0,518
17    8707029    rs9912143    A    G    120.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329805    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
17    8725214    rs113072503    A    AG    157.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=9.2322;IndelType=I;MQ=59.73;MQ0=0;QD=31.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
17    8726160    rs2074258    A    G    494.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:528,39,0
17    8731745    rs12949852    T    C    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    8736394    rs12945801    T    C    130.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:164,15,0
17    8736433    rs16957648    C    T    167.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
17    8738493    rs28390979    C    T    85.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
17    8738553    rs2072089    G    A    123.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
17    8738575    rs1005898    A    G    147.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:180,15,0
17    8739735    rs12951637    A    C    548.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:581,42,0
17    8739821    rs12948724    G    C    2255.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=37.59;ReadPosRankSum=0.808;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2288,166,0
17    8741377    rs8064777    T    G    199.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=33.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
17    8742830    rs9910718    C    T    76.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
17    8742862    rs9910741    C    G    217.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:251,18,0
17    8743118    rs16957654    G    A    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PIK3R6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311434    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
17    9065935    rs7214739    T    C    103.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.95;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173229    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,138
17    9066001    rs2072321    C    T    294.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.429;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=1.091;QD=13.41;ReadPosRankSum=-1.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173229    GT:AD:DP:GQ:PL    0/1:11,11:22:99:325,0,394
17    9066098    rs2286510    C    T    382.42    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=1.25;DB;DP=50;Dels=0.0;FS=1.19;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=0.368;QD=7.65;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173229    GT:AD:DP:GQ:PL    0/1:32,18:50:99:412,0,877
17    9083081    rs9907119    C    T    343.40    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.251;QD=11.45;ReadPosRankSum=-1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173229    GT:AD:DP:GQ:PL    0/1:17,13:30:99:373,0,501
17    9083390    rs8081736    G    C    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173229    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
17    9086228    rs2302196    C    A    1180.54    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=76;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-1.473;QD=15.53;ReadPosRankSum=-0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173229    GT:AD:DP:GQ:PL    0/1:34,42:76:99:1211,0,847
17    9086293    rs2302197    G    C    478.01    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.841;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.46;MQ0=0;MQRankSum=0.239;QD=11.12;ReadPosRankSum=-2.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173229    GT:AD:DP:GQ:PL    0/1:22,20:43:99:508,0,728
17    9086561    rs16957995    C    A    309.16    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.393;DB;DP=39;Dels=0.0;FS=1.342;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.832;QD=7.93;ReadPosRankSum=-0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000173229    GT:AD:DP:GQ:PL    0/1:27,12:39:99:339,0,715
17    9086676    rs16957998    T    G    125.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.581;QD=8.94;ReadPosRankSum=-0.71;SNPEFF_AMINO_ACID_CHANGE=V128G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9086565_9086993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436734    GT:AD:DP:GQ:PL    0/1:8,6:14:99:155,0,214
17    9086708    rs62068199    T    C    56.22    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.03;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=W139R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9086565_9086993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436734    GT:AD:DP:GQ:PL    0/1:5,3:8:86.22:86,0,148
17    9153861    rs8974    G    C    303.66    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=23.36;ReadPosRankSum=-1.48;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    0/1:2,11:13:52.18:334,0,52
17    9395033    rs6503214    A    G    1083.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1117,99,0
17    9395231    rs9893664    G    A    2889.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=D152;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9395146_9395238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2923,214,0
17    9408594    rs2249929    A    C    240.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=24.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:274,21,0
17    9408609    rs2125348    A    G    119.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=19.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:152,12,0
17    9408644    rs2305923    C    A    133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
17    9471711    rs1133295    T    G    1033.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=R32;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9471688_9471787;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    1/1:0,30:30:87.26:1067,87,0
17    9479048    rs7210038    T    C    123.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
17    9479098    rs7224817    C    A    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306357    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
17    9488934    rs144307636    GC    G    404.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=39.4647;IndelType=D;MQ=53.61;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299764    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:447,36,0
17    9490341    rs11657876    C    A    34.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=8.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299764    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:66,6,0
17    9501313    rs7220517    A    G    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299764    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
17    9501395    rs6503233    G    T    100.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299764    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:133,12,0
17    9503644    rs2016355    T    C    364.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.81;QD=24.29;ReadPosRankSum=-0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299764    GT:AD:DP:GQ:PL    1/1:1,14:15:36.07:397,36,0
17    9515777    rs6503235    G    A    787.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_AMINO_ACID_CHANGE=E268K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9515626_9515796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396219    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:821,60,0
17    9586165    rs12453943    C    T    1110.29    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.616;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7886;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=13.88;ReadPosRankSum=1.034;SNPEFF_AMINO_ACID_CHANGE=S377;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9586140_9586275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285199    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1140,0,1227
17    9590319    rs7220651    T    G    144.71    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.08;ReadPosRankSum=-1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285199    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,136
17    9590356    rs7220671    T    C    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285199    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,152
17    9596372    rs151264652    C    T    1077.09    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=72;Dels=0.0;FS=5.336;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.479;QD=14.96;ReadPosRankSum=-1.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285199    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1107,0,968
17    9631107    rs9893729    G    A    75.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.61;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285199    GT:AD:DP:GQ:PL    0/1:3,3:6:92:106,0,92
17    9632247    rs12450515    A    G    1627.03    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.316;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3039;MQ=59.31;MQ0=0;MQRankSum=0.122;QD=12.14;ReadPosRankSum=-1.911;SNPEFF_AMINO_ACID_CHANGE=R1104;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9631271_9633001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP43;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285199    GT:AD:DP:GQ:PL    0/1:70,63:134:99:1657,0,2104
17    9711104    rs3848437    G    A    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027045.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399363    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
17    9712092    rs56256681    G    A    214.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027045.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399363    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
17    9712255    rs9908677    G    A    443.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.56;SNPEFF_AMINO_ACID_CHANGE=L135;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9712147_9712299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027045.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399363    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:476,36,0
17    9713714    rs4791874    C    T    130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027045.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399363    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
17    9714009    rs4079466    C    A    939.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.2;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC027045.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399363    GT:AD:DP:GQ:PL    1/1:0,28:29:78.23:973,78,0
17    9729413    rs115829319    G    A    288.88    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=26.26;ReadPosRankSum=0.118;SNPEFF_AMINO_ACID_CHANGE=G11;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9729381_9729569;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262441    GT:AD:DP:GQ:PL    0/1:2,9:11:48.13:319,0,48
17    9760716    rs2293100    G    T    497.74    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=28;Dels=0.0;FS=4.866;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.628;QD=17.78;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262441    GT:AD:DP:GQ:PL    0/1:11,17:28:99:528,0,332
17    9764531    rs2001486    A    G    952.60    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=81;Dels=0.0;FS=6.141;HRun=2;HaplotypeScore=8.9724;MQ=57.68;MQ0=0;MQRankSum=-0.313;QD=11.76;ReadPosRankSum=-0.965;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262441    GT:AD:DP:GQ:PL    0/1:34,47:81:99:983,0,643
17    9765598    rs2293101    T    C    148.48    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=13.5;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262441    GT:AD:DP:GQ:PL    0/1:5,6:11:99:178,0,184
17    9769199    rs756223    T    C    1616.14    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=110;Dels=0.0;FS=3.635;HRun=3;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.258;QD=14.69;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=F344L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9769151_9769222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304773    GT:AD:DP:GQ:PL    0/1:45,65:110:99:1646,0,1307
17    9769278    rs4791896    G    C    821.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.441;DB;DP=56;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=0.9578;MQ=59.59;MQ0=0;MQRankSum=-0.563;QD=14.66;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304773    GT:AD:DP:GQ:PL    0/1:28,28:56:99:851,0,903
17    9769421    rs4791897    C    A    32.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304773    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
17    9783566    rs4791903    G    C    915.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.46;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262441    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:948,72,0
17    9783855    rs2277690    A    G    1291.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.325;DB;DP=42;Dels=0.0;FS=4.126;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.384;QD=30.76;ReadPosRankSum=0.856;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262441    GT:AD:DP:GQ:PL    1/1:2,40:42:63.58:1325,64,0
17    9791159    rs2240737    G    A    921.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.069;QD=36.87;ReadPosRankSum=1.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLP2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262441    GT:AD:DP:GQ:PL    1/1:1,24:25:41.81:955,42,0
17    9801324    rs887259    C    T    264.08    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=22;Dels=0.04;FS=0.0;HRun=0;HaplotypeScore=10.6258;MQ=58.79;MQ0=0;MQRankSum=-1.14;QD=11.48;ReadPosRankSum=0.456;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCVRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226193    GT:AD:DP:GQ:PL    0/1:9,11:22:99:294,0,300
17    9804473    rs17744377    C    G    244.25    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.838;QD=14.37;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCVRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226193    GT:AD:DP:GQ:PL    0/1:9,8:17:99:274,0,260
17    9804493    rs6503264    C    T    57.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=5.21;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RCVRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226193    GT:AD:DP:GQ:PL    0/1:6,4:10:87.34:87,0,217
17    9820695    rs4791910    C    T    333.34    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=2.676;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.457;QD=20.83;ReadPosRankSum=1.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323816    GT:AD:DP:GQ:PL    0/1:5,11:16:97.80:363,0,98
17    9820739    rs11078821    A    G    77.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=12.86;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323816    GT:AD:DP:GQ:PL    0/1:2,4:6:50.95:107,0,51
17    9830171    rs56199323    C    T    281.04    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.123;QD=10.41;ReadPosRankSum=0.617;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323816    GT:AD:DP:GQ:PL    0/1:16,11:27:99:311,0,517
17    9846521    rs17339499    G    C    1015.11    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=106;Dels=0.0;FS=4.938;HRun=1;HaplotypeScore=0.9967;MQ=59.13;MQ0=0;MQRankSum=-1.063;QD=9.58;ReadPosRankSum=1.233;SNPEFF_AMINO_ACID_CHANGE=T155;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_9846438_9846553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437099    GT:AD:DP:GQ:PL    0/1:63,43:106:99:1045,0,1732
17    9846631    rs8066006    G    A    484.02    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.802;DB;DP=41;Dels=0.0;FS=4.27;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.367;QD=11.81;ReadPosRankSum=-0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323816    GT:AD:DP:GQ:PL    0/1:23,18:41:99:514,0,751
17    9846724    rs733804    C    A    148.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5873;MQ=56.04;MQ0=0;MQRankSum=-0.717;QD=12.41;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323816    GT:AD:DP:GQ:PL    0/1:6,6:12:99:179,0,146
17    9850440    rs62064532    C    T    99.43    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.89;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323816    GT:AD:DP:GQ:PL    0/1:1,4:5:21.08:129,0,21
17    10204401    rs76865302    C    T    113.64    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9279;MQ=60.0;MQ0=0;MQRankSum=-1.6;QD=8.12;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    0/1:9,5:14:99:144,0,272
17    10205047    rs62060457    C    G    430.38    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.994;DB;DP=29;Dels=0.0;FS=6.532;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.566;QD=14.84;ReadPosRankSum=1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    0/1:13,16:29:99:460,0,360
17    10205067    rs2008528    C    T    735.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:769,57,0
17    10214310    rs10852921    A    G    1213.53    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.506;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.006;QD=16.4;ReadPosRankSum=-0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    0/1:36,38:74:99:1244,0,1277
17    10214628    rs2074867    C    T    958.67    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=5.109;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6777;MQ=59.06;MQ0=0;MQRankSum=0.705;QD=13.89;ReadPosRankSum=-1.846;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    0/1:34,35:69:99:989,0,828
17    10216063    rs150690480    G    A    768.19    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.207;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-1.567;QD=13.48;ReadPosRankSum=1.03;SNPEFF_AMINO_ACID_CHANGE=A1398V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10215891_10216074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    0/1:31,26:57:99:798,0,745
17    10216442    rs4239113    C    A    1568.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1601,126,0
17    10218984    rs17763418    G    T    671.68    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.006;DB;DP=52;Dels=0.0;FS=2.625;HRun=0;HaplotypeScore=1.4105;MQ=58.66;MQ0=0;MQRankSum=0.048;QD=12.92;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418404    GT:AD:DP:GQ:PL    0/1:30,22:52:99:702,0,898
17    10219113    rs17690195    C    T    1453.66    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.882;DB;DP=111;Dels=0.0;FS=3.618;HRun=1;HaplotypeScore=1.8658;MQ=59.79;MQ0=0;MQRankSum=-0.003;QD=13.1;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=R1294Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10219010_10219128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    0/1:62,49:111:99:1484,0,1815
17    10219366    rs2240577    C    T    3157.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=36.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418404    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3190,232,0
17    10219470    rs2240578    A    T    733.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418404    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:766,60,0
17    10223714    rs2074877    T    C    4853.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_AMINO_ACID_CHANGE=M1071V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10223668_10223813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4853,355,0
17    10227708    rs3826442    C    T    874.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,23:23:69.19:907,69,0
17    10231498    rs2277645    A    C    1279.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.782;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1312,114,0
17    10235360    rs8064714    G    C    1477.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=37.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1511,111,0
17    10236465    rs2240579    G    A    392.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.17;SNPEFF_AMINO_ACID_CHANGE=N375;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10236391_10236508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418404    GT:AD:DP:GQ:PL    1/1:0,15:15:30.10:426,30,0
17    10243589    rs4445936    C    A    2268.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2301,172,0
17    10243717    rs3760423    G    A    1567.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=30.73;SNPEFF_AMINO_ACID_CHANGE=G307;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10243645_10243718;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418404    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1600,123,0
17    10243789    rs3760424    T    C    1036.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=58.87;MQ0=0;QD=28.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,37:37:90.25:1069,90,0
17    10243858    rs3760425    C    T    237.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:270,21,0
17    10247544    rs12453187    C    T    338.51    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.778;QD=24.18;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    0/1:4,10:14:94.76:369,0,95
17    10249888    rs112787404    G    GA    1931.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=3;HaplotypeScore=121.6067;IndelType=I;MQ=60.41;MQ0=0;QD=39.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:2,47:49:99:1974,141,0
17    10254197    rs2108568    A    G    310.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:343,27,0
17    10258153    rs111958758    GT    G    917.44    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=8.064;DB;DP=112;FS=0.0;HRun=10;HaplotypeScore=502.6773;IndelType=D;MQ=59.79;MQ0=0;MQRankSum=-0.064;QD=8.19;ReadPosRankSum=-1.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252172    GT:AD:DP:GQ:PL    0/1:65,46:112:99:956,0,1291
17    10297658    rs8069834    A    G    589.62    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=60;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=1.7206;MQ=59.23;MQ0=0;MQRankSum=-1.152;QD=9.83;ReadPosRankSum=0.713;SNPEFF_AMINO_ACID_CHANGE=W1692R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10297566_10297769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:37,23:60:99:620,0,1047
17    10298301    rs9901358    T    C    196.19    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.35;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:5,7:12:97.13:226,0,97
17    10303144    rs3815314    G    C    159.11    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.52;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:189,0,25
17    10304261    rs3744552    G    A    805.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.773;DB;DP=39;Dels=0.0;FS=7.072;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=0.849;QD=20.65;ReadPosRankSum=0.402;SNPEFF_AMINO_ACID_CHANGE=I1090;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10304186_10304276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:13,26:39:99:835,0,400
17    10309962    rs2024076    C    T    1446.58    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DB;DP=127;Dels=0.0;FS=4.665;HRun=0;HaplotypeScore=3.808;MQ=60.0;MQ0=0;MQRankSum=0.092;QD=11.39;ReadPosRankSum=-0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:78,49:127:99:1477,0,2373
17    10314375    rs12601552    G    A    130.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=8.73;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:10,5:15:99:161,0,371
17    10314395    rs12601678    C    T    90.26    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=8.21;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:7,4:11:99:120,0,258
17    10314484    rs9303258    G    C    42.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.31;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:73,0,26
17    10316275    rs2041125    C    T    83.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
17    10316279    rs2041126    T    C    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
17    10317125    rs11078845    G    A    235.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.647;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.936;QD=9.82;ReadPosRankSum=-0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:15,9:24:99:266,0,380
17    10317831    rs4791406    A    G    85.56    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=7.78;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:7,4:11:99:116,0,254
17    10317842    rs4791407    A    G    68.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=7.61;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:5,4:9:98.49:98,0,181
17    10318636    rs8068729    A    G    3645.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2348;MQ=59.79;MQ0=0;QD=32.85;SNPEFF_AMINO_ACID_CHANGE=T238;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10318609_10318701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    1/1:0,110:111:99:3646,277,0
17    10319148    rs7216301    A    G    63.19    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.64;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252173    GT:AD:DP:GQ:PL    0/1:2,3:5:67.95:93,0,68
17    10346781    rs3744554    T    C    1441.16    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.29;DB;DP=105;Dels=0.0;FS=0.839;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-0.013;QD=13.6;ReadPosRankSum=-0.624;SNPEFF_AMINO_ACID_CHANGE=K1911E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10346607_10346844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:48,57:105:99:1471,0,1593
17    10347049    rs144195802    C    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    10348354    rs2277649    T    C    1028.82    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.561;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7884;MQ=57.27;MQ0=0;MQRankSum=0.037;QD=13.72;ReadPosRankSum=1.225;SNPEFF_AMINO_ACID_CHANGE=D1802G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10348293_10348463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1059,0,1239
17    10348705    rs3833153    A    AGAAGC    1469.69    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.058;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=146.7782;IndelType=I;MQ=57.08;MQ0=0;MQRankSum=-0.971;QD=39.72;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:19,17:37:99:1509,0,798
17    10355371    rs11651295    C    T    624.56    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.753;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.525;QD=9.32;ReadPosRankSum=-1.445;SNPEFF_AMINO_ACID_CHANGE=E1209K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10355258_10355647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:42,25:67:99:655,0,1466
17    10355763    rs917361    T    C    981.82    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=3.684;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=58.63;MQ0=0;MQRankSum=-0.538;QD=16.93;ReadPosRankSum=0.157;SNPEFF_AMINO_ACID_CHANGE=I1106M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10355733_10355823;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:25,33:58:99:1012,0,781
17    10356816    rs3744557    C    G    498.97    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=22;Dels=0.0;FS=2.128;HRun=0;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=0.124;QD=22.68;ReadPosRankSum=2.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:6,16:22:99:529,0,144
17    10357281    rs3826444    T    G    496.84    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.421;DB;DP=41;Dels=0.0;FS=11.907;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.654;QD=12.12;ReadPosRankSum=0.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:24,17:41:99:527,0,777
17    10358831    rs3744559    T    C    326.01    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=21;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.091;QD=15.52;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:10,11:21:99:356,0,353
17    10359782    rs970292    A    G    831.10    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=61;Dels=0.0;FS=16.909;HRun=0;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;MQRankSum=0.705;QD=13.62;ReadPosRankSum=0.144;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:30,31:61:99:861,0,919
17    10360016    rs2041123    C    G    251.41    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.271;QD=25.14;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:2,8:10:51.16:281,0,51
17    10360065    rs2041124    T    G    118.04    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.61;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:148,0,25
17    10362746    rs2058099    A    G    1198.34    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=3.201;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.23;MQ0=0;MQRankSum=0.393;QD=16.19;ReadPosRankSum=0.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1228,0,1058
17    10363410    rs3744561    A    G    2103.48    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.978;DB;DP=148;Dels=0.0;FS=1.418;HRun=0;HaplotypeScore=4.8365;MQ=56.81;MQ0=0;MQRankSum=-0.14;QD=14.21;ReadPosRankSum=-1.272;SNPEFF_AMINO_ACID_CHANGE=N425;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10363269_10363418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255381    GT:AD:DP:GQ:PL    0/1:76,72:148:99:2133,0,2302
17    10364191    rs1029665    T    C    744.86    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.287;DB;DP=58;Dels=0.0;FS=5.083;HRun=0;HaplotypeScore=0.9469;MQ=59.6;MQ0=0;MQRankSum=-0.04;QD=12.84;ReadPosRankSum=1.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532288    GT:AD:DP:GQ:PL    0/1:30,28:58:99:775,0,874
17    10399897    rs3744563    A    G    338.04    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.481;DB;DP=41;Dels=0.0;FS=1.89;HRun=1;HaplotypeScore=0.8941;MQ=54.29;MQ0=0;MQRankSum=2.048;QD=8.24;ReadPosRankSum=-0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    0/1:27,14:41:99:368,0,895
17    10400963    rs723903    C    G    125.92    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=7.87;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    0/1:10,6:16:99:156,0,369
17    10402142    rs148781664    G    A    991.91    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.456;DB;DP=72;Dels=0.0;FS=1.491;HRun=1;HaplotypeScore=0.0;MQ=57.78;MQ0=0;MQRankSum=0.178;QD=13.78;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    0/1:33,38:72:99:1022,0,954
17    10411335    rs71365767    G    GT    381.01    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.705;DB;DP=35;FS=3.68;HRun=12;HaplotypeScore=296.8712;IndelType=I;MQ=47.54;MQ0=0;MQRankSum=-1.218;QD=10.89;ReadPosRankSum=-1.616;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    0/1:21,14:35:99:420,0,213
17    10411370    rs4791995    T    C    128.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.098;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;MQRankSum=-0.578;QD=8.06;ReadPosRankSum=1.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    0/1:8,8:16:99:159,0,245
17    10411397    rs4791996    G    A    162.04    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=20.26;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    0/1:2,6:8:55.90:192,0,56
17    10411632    rs35152572    A    G    424.93    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.496;DB;DP=39;Dels=0.0;FS=1.541;HRun=1;HaplotypeScore=0.9159;MQ=58.2;MQ0=0;MQRankSum=0.071;QD=10.9;ReadPosRankSum=-0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    0/1:22,17:39:99:455,0,575
17    10415040    rs4791997    A    T    917.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.88;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:951,72,0
17    10415840    rs2007027    A    G    1916.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.85;SNPEFF_AMINO_ACID_CHANGE=F344;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10415725_10415863;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1949,150,0
17    10418275    rs1017068    T    G    1011.92    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=3.568;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.1;MQ0=0;MQRankSum=1.608;QD=14.05;ReadPosRankSum=1.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226207    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1042,0,1229
17    10426266    rs7224268    A    G    35.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
17    10426343    rs7223755    C    T    177.44    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=6.82;ReadPosRankSum=0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:19,7:26:99:207,0,710
17    10427924    rs1042236    G    A    808.63    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=58;Dels=0.0;FS=1.105;HRun=0;HaplotypeScore=0.0;MQ=48.22;MQ0=0;MQRankSum=-4.532;QD=13.94;ReadPosRankSum=0.478;SNPEFF_AMINO_ACID_CHANGE=A1678;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10427783_10427986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:25,33:58:99:839,0,717
17    10430496    rs75608430    C    T    137.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=11.49;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,238
17    10431275    rs12952334    A    G    377.82    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6634;MQ=58.84;MQ0=0;MQRankSum=0.57;QD=18.89;ReadPosRankSum=0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:7,13:20:99:408,0,156
17    10431345    rs9899992    G    T    64.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=54.65;MQ0=0;MQRankSum=0.55;QD=7.13;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:5,4:9:94.20:94,0,133
17    10431877    rs71365771    A    AT    95.60    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DB;DP=19;FS=0.0;HRun=6;HaplotypeScore=41.271;IndelType=I;MQ=58.78;MQ0=0;MQRankSum=0.099;QD=5.03;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:14,5:19:99:135,0,344
17    10432638    rs2277651    T    C    1027.15    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.822;DB;DP=68;Dels=0.0;FS=4.857;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.344;QD=15.11;ReadPosRankSum=-2.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1057,0,1133
17    10434925    rs3744565    T    C    561.10    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.282;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.646;QD=10.59;ReadPosRankSum=-0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:32,21:53:99:591,0,1007
17    10435325    rs11379780    G    GA    516.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=6;HaplotypeScore=31.376;IndelType=I;MQ=62.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    1/1:2,14:16:45.14:558,45,0
17    10442977    rs2277653    T    C    138.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=13.85;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005323.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399342    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,174
17    10446182    rs719277    C    T    154.89    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.829;QD=7.04;ReadPosRankSum=-1.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420805    GT:AD:DP:GQ:PL    0/1:15,6:21:99:185,0,525
17    10446508    rs11078849    T    G    820.03    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=61;Dels=0.0;FS=12.011;HRun=0;HaplotypeScore=0.9665;MQ=59.24;MQ0=0;MQRankSum=0.802;QD=13.44;ReadPosRankSum=1.971;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420805    GT:AD:DP:GQ:PL    0/1:29,32:61:99:850,0,1007
17    10448769    rs11078850    A    T    2001.67    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=115;Dels=0.0;FS=5.098;HRun=0;HaplotypeScore=2.722;MQ=59.44;MQ0=0;MQRankSum=0.348;QD=17.41;ReadPosRankSum=-0.098;SNPEFF_AMINO_ACID_CHANGE=P133;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10448663_10448819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:43,71:115:99:2032,0,1282
17    10450816    rs12600539    T    C    1783.53    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.503;DB;DP=124;Dels=0.0;FS=1.447;HRun=0;HaplotypeScore=0.734;MQ=59.29;MQ0=0;MQRankSum=0.828;QD=14.38;ReadPosRankSum=0.335;SNPEFF_AMINO_ACID_CHANGE=E108;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10450792_10450935;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245503    GT:AD:DP:GQ:PL    0/1:58,65:124:99:1814,0,1753
17    10532884    rs12940161    G    A    331.69    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=33;Dels=0.0;FS=1.422;HRun=0;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;MQRankSum=0.921;QD=10.05;ReadPosRankSum=1.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:20,13:33:99:362,0,531
17    10533595    rs3216886    C    CT    1943.31    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.309;DB;DP=90;FS=0.82;HRun=1;HaplotypeScore=241.634;IndelType=I;MQ=60.11;MQ0=0;MQRankSum=-0.337;QD=21.59;ReadPosRankSum=-0.827;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:39,51:90:99:1982,0,1131
17    10535349    rs2239936    C    G    336.71    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.414;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.386;QD=12.95;ReadPosRankSum=-0.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:14,12:26:99:367,0,356
17    10535761    rs4792008    G    A    466.34    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.604;DB;DP=34;Dels=0.0;FS=1.884;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.087;QD=13.72;ReadPosRankSum=0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:18,16:34:99:496,0,557
17    10536018    rs2285479    G    A    2482.97    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=153;Dels=0.0;FS=0.619;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.84;QD=16.23;ReadPosRankSum=-0.196;SNPEFF_AMINO_ACID_CHANGE=I1577;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10535793_10536101;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:70,82:153:99:2513,0,1925
17    10536184    rs2285478    A    G    490.16    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.9;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.14;MQ0=0;MQRankSum=0.469;QD=18.15;ReadPosRankSum=-0.864;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:11,16:27:99:520,0,371
17    10536235    rs1981514    T    C    116.66    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=10.61;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:6,5:11:99:147,0,159
17    10541515    rs2285477    C    T    445.70    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.432;DB;DP=49;Dels=0.0;FS=1.19;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.282;QD=9.1;ReadPosRankSum=-1.83;SNPEFF_AMINO_ACID_CHANGE=A1192T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10541360_10541749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:28,21:49:99:476,0,823
17    10541741    rs201626    A    G    347.23    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.344;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.335;QD=11.2;ReadPosRankSum=-0.084;SNPEFF_AMINO_ACID_CHANGE=I1116;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10541360_10541749;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:18,13:31:99:377,0,476
17    10542471    rs2285475    T    G    960.02    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.573;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8313;MQ=59.69;MQ0=0;MQRankSum=0.839;QD=12.97;ReadPosRankSum=0.985;SNPEFF_AMINO_ACID_CHANGE=R1046;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10542361_10542506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:36,38:74:99:990,0,1074
17    10542765    rs2285474    A    G    453.87    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.155;DB;DP=36;Dels=0.0;FS=3.345;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.268;QD=12.61;ReadPosRankSum=-1.521;SNPEFF_AMINO_ACID_CHANGE=S984;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10542615_10542791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:19,17:36:99:484,0,681
17    10542803    rs2285473    T    C    753.29    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=2.745;DB;DP=50;Dels=0.0;FS=5.691;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.382;QD=15.07;ReadPosRankSum=0.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:23,27:50:99:783,0,767
17    10542886    rs2285472    T    C    1257.52    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.878;DB;DP=89;Dels=0.0;FS=5.757;HRun=1;HaplotypeScore=2.6274;MQ=59.48;MQ0=0;MQRankSum=0.485;QD=14.13;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=T972;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10542877_10543119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:41,48:89:99:1288,0,1279
17    10543183    rs2285471    A    G    410.15    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.275;DB;DP=24;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=0.8667;MQ=58.05;MQ0=0;MQRankSum=0.348;QD=17.09;ReadPosRankSum=1.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:11,13:24:99:440,0,363
17    10543218    rs2285470    A    G    421.69    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.737;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.79;MQ0=0;MQRankSum=-0.507;QD=15.06;ReadPosRankSum=-0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:13,15:28:99:452,0,444
17    10543281    rs71365788    TAA    T    166.86    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=0.665;DB;DP=46;FS=4.099;HRun=14;HaplotypeScore=269.9946;IndelType=D;MQ=56.14;MQ0=1;MQRankSum=1.184;QD=3.55;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:29,14:46:99:206,0,801
17    10543463    rs2285469    T    C    1215.09    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.888;DB;DP=97;Dels=0.0;FS=8.311;HRun=1;HaplotypeScore=0.9998;MQ=59.33;MQ0=0;MQRankSum=-0.041;QD=12.53;ReadPosRankSum=-0.153;SNPEFF_AMINO_ACID_CHANGE=A844;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10543313_10543568;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:51,46:97:99:1245,0,1584
17    10544018    rs876660    T    C    179.24    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.133;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.49;MQ0=0;MQRankSum=0.027;QD=7.17;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:14,11:25:99:209,0,472
17    10544416    rs876657    G    T    1255.12    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=4.524;DB;DP=102;Dels=0.0;FS=4.905;HRun=0;HaplotypeScore=2.8362;MQ=60.0;MQ0=0;MQRankSum=-0.375;QD=12.31;ReadPosRankSum=0.226;SNPEFF_AMINO_ACID_CHANGE=G717;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_10544402_10544519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:58,44:102:99:1285,0,1677
17    10544696    rs3216884    GA    G    465.99    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=3.42;DB;DP=61;FS=1.53;HRun=10;HaplotypeScore=162.8613;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=-1.065;QD=7.64;ReadPosRankSum=0.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:35,25:61:99:505,0,676
17    10546130    rs2285468    T    G    1567.85    PASS    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=2.541;DB;DP=100;Dels=0.0;FS=4.416;HRun=2;HaplotypeScore=2.4282;MQ=57.38;MQ0=0;MQRankSum=-0.525;QD=15.68;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:43,57:100:99:1598,0,890
17    10548184    rs2239935    T    C    36.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
17    10548992    rs2239934    C    T    545.28    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.113;DB;DP=43;Dels=0.0;FS=3.057;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.159;QD=12.68;ReadPosRankSum=1.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:24,19:43:99:575,0,787
17    10549184    rs2239933    G    A    910.48    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.611;DB;DP=73;Dels=0.0;FS=3.261;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=0.822;QD=12.47;ReadPosRankSum=-1.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:38,35:73:99:940,0,1057
17    10552000    rs3214114    A    AT    462.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.663;DB;DP=36;FS=0.0;HRun=9;HaplotypeScore=73.0583;IndelType=I;MQ=60.9;MQ0=0;MQRankSum=-1.021;QD=12.85;ReadPosRankSum=-1.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:18,18:36:99:502,0,245
17    10553046    rs1989810    A    G    823.99    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.152;DB;DP=49;Dels=0.0;FS=7.112;HRun=1;HaplotypeScore=0.5784;MQ=59.53;MQ0=0;MQRankSum=-1.553;QD=16.82;ReadPosRankSum=0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:23,26:49:99:854,0,757
17    10555021    rs2285467    T    C    611.64    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.224;DB;DP=55;Dels=0.0;FS=16.519;HRun=0;HaplotypeScore=0.9997;MQ=57.29;MQ0=0;MQRankSum=0.728;QD=11.12;ReadPosRankSum=-1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:26,29:55:99:642,0,849
17    10555028    rs2285466    G    A    673.14    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.31;DB;DP=50;Dels=0.0;FS=9.546;HRun=0;HaplotypeScore=2.6278;MQ=57.01;MQ0=0;MQRankSum=-0.321;QD=13.46;ReadPosRankSum=-1.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:22,28:50:99:703,0,692
17    10555049    rs138453847    TTTA    T    319.48    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.271;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=275.6211;IndelType=D;MQ=54.81;MQ0=0;MQRankSum=-0.702;QD=9.4;ReadPosRankSum=1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:26,8:34:99:359,0,371
17    10555526    rs2285464    C    T    38.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=12.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:70,6,0
17    10555602    rs2285463    G    A    332.75    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DB;DP=21;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=0.8667;MQ=58.89;MQ0=0;MQRankSum=-0.387;QD=15.85;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:10,11:21:99:363,0,245
17    10556096    rs6503316    A    G    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226209    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:72,0,29
17    10595388    rs2520178    A    G    262.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255390    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:295,24,0
17    10707241    rs1078643    G    A    317.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC002347.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379770    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:350,27,0
17    10707285    rs1550656    C    T    209.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC002347.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379770    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
17    11145535    rs72635524    T    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343478    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    11166782    rs62000368    G    A    407.15    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.095;DB;DP=33;Dels=0.0;FS=5.649;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.831;QD=12.34;ReadPosRankSum=-0.831;SNPEFF_AMINO_ACID_CHANGE=T144;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11166683_11166843;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343478    GT:AD:DP:GQ:PL    0/1:18,15:33:99:437,0,429
17    11166956    rs16944481    A    G    42.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.71;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343478    GT:AD:DP:GQ:PL    0/1:2,2:4:56.86:73,0,57
17    11455359    rs2969191    C    T    333.49    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=2.055;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.001;QD=19.62;ReadPosRankSum=1.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343478    GT:AD:DP:GQ:PL    0/1:5,12:17:98.70:363,0,99
17    11459012    rs1030055    G    C    3817.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHISA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343478    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3817,280,0
17    11511412    rs4792156    A    G    3433.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3434,283,0
17    11511457    rs11078022    C    T    2098.73    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.286;DB;DP=154;Dels=0.0;FS=1.321;HRun=0;HaplotypeScore=7.1928;MQ=59.7;MQ0=0;MQRankSum=0.781;QD=13.63;ReadPosRankSum=-0.419;SNPEFF_AMINO_ACID_CHANGE=P143;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11511446_11511642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:79,75:154:99:2129,0,2336
17    11513661    rs2191072    C    T    555.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:588,45,0
17    11514027    rs2215235    G    A    169.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
17    11522764    rs10852799    G    A    1168.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1201,90,0
17    11523082    rs9892256    A    G    2077.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=Q445R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11522865_11523098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2111,159,0
17    11536093    rs3744575    A    G    547.76    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=2.09;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.157;QD=18.26;ReadPosRankSum=0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:11,19:30:99:578,0,294
17    11543457    rs11658293    G    T    331.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.408;QD=22.09;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:5,10:15:99:361,0,154
17    11543520    rs11653848    T    C    818.07    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=3.524;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=16.04;ReadPosRankSum=-0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:20,29:51:99:848,0,512
17    11550340    rs11870495    T    C    510.83    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.327;DB;DP=37;Dels=0.0;FS=6.388;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.957;QD=13.81;ReadPosRankSum=-0.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:19,18:37:99:541,0,581
17    11555990    rs4792159    T    C    131.85    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=9.42;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:9,5:14:99:162,0,303
17    11556473    rs3744576    G    A    40.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=8.19;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:2,3:5:67.52:71,0,68
17    11582854    rs9902527    A    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
17    11583089    rs8071438    T    C    1584.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=D1123;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11583074_11583296;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1618,120,0
17    11592683    rs143029669    GT    G    67.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=13;HaplotypeScore=12.5233;IndelType=D;MQ=64.19;MQ0=0;QD=13.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,5:5:14.91:109,15,0
17    11603300    rs887233    G    T    239.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
17    11604598    rs7214186    T    A    1364.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1398,102,0
17    11622494    rs12945437    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    11622953    rs8076210    G    A    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
17    11622978    rs17602516    T    G    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:72,0,33
17    11645786    rs8082578    T    A    129.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
17    11648332    rs3744578    C    T    1397.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_AMINO_ACID_CHANGE=N2110;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11648114_11648401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1430,108,0
17    11648444    rs3744580    T    C    382.36    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.82;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.2;MQ0=0;MQRankSum=1.513;QD=13.18;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:16,13:29:99:412,0,515
17    11648532    rs3826450    A    G    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.37;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,109
17    11650958    rs61743635    G    A    772.95    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=55;Dels=0.0;FS=2.329;HRun=1;HaplotypeScore=1.6281;MQ=59.66;MQ0=0;MQRankSum=-0.815;QD=14.05;ReadPosRankSum=-0.26;SNPEFF_AMINO_ACID_CHANGE=R2162K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11650873_11651083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:25,30:55:99:803,0,774
17    11660722    rs11078030    G    T    420.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
17    11666586    rs11658438    G    A    64.55    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=5.87;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:8,3:11:94.55:95,0,213
17    11666674    rs2277657    T    C    343.36    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.218;QD=12.72;ReadPosRankSum=1.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:14,13:27:99:373,0,510
17    11684571    rs2277659    G    C    98.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=16.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:2,4:6:67.19:129,0,67
17    11697049    rs11456419    C    CA    1036.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=2;HaplotypeScore=50.5593;IndelType=I;MQ=59.46;MQ0=0;QD=41.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1079,75,0
17    11701224    rs77238283    C    T    70.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.75;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:3,3:6:96.72:100,0,97
17    11737752    rs8065377    A    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    11737899    rs3744584    T    G    83.55    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=16;Dels=0.0;FS=2.187;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.359;QD=5.22;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:11,5:16:99:114,0,335
17    11737938    rs3744585    G    A    69.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.007;DB;DP=21;Dels=0.0;FS=4.01;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=3.32;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:14,7:21:99:100,0,405
17    11737941    rs3744586    C    T    69.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=18;Dels=0.0;FS=4.634;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.171;QD=3.87;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:12,6:18:99:100,0,413
17    11738314    rs12942631    A    G    72.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.37;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:3,4:7:71.48:103,0,71
17    11738332    rs12453237    A    G    82.72    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:113,0,29
17    11757556    rs12449553    C    G    830.72    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.721;DB;DP=77;Dels=0.0;FS=3.446;HRun=1;HaplotypeScore=0.9159;MQ=59.7;MQ0=0;MQRankSum=-0.037;QD=10.79;ReadPosRankSum=1.05;SNPEFF_AMINO_ACID_CHANGE=P1830;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11757320_11757745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413703    GT:AD:DP:GQ:PL    0/1:42,35:77:99:861,0,1330
17    11772285    rs59647695    C    T    317.12    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.626;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-2.051;QD=22.65;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:4,10:14:99:347,0,128
17    11772879    rs8078938    C    T    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    11778156    rs7211691    G    A    383.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.545;QD=21.33;ReadPosRankSum=1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:6,12:18:99:414,0,172
17    11778240    rs7211854    G    A    816.69    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.753;DB;DP=62;Dels=0.0;FS=16.909;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=13.17;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:32,30:62:99:847,0,802
17    11786951    rs8070256    T    C    986.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.255;DB;DP=76;Dels=0.0;FS=0.845;HRun=0;HaplotypeScore=0.9789;MQ=59.7;MQ0=0;MQRankSum=-0.182;QD=12.98;ReadPosRankSum=-1.044;SNPEFF_AMINO_ACID_CHANGE=L2201;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11786903_11787067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413703    GT:AD:DP:GQ:PL    0/1:38,38:76:99:1017,0,1295
17    11794947    rs61611580    ACT    A    191.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=33.6712;IndelType=D;MQ=47.76;MQ0=0;QD=38.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:234,15,0
17    11794955    rs55944899    C    T    173.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.48;MQ0=0;QD=19.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,9:9:18.04:206,18,0
17    11806266    rs3815269    T    C    577.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,22:22:48.15:610,48,0
17    11826949    rs73300404    C    G    66.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-0.55;QD=9.49;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:4,3:7:96.46:96,0,144
17    11826952    rs73300406    T    C    70.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.55;QD=10.12;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,144
17    11827112    rs28622261    G    A    322.18    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=5.11;DB;DP=47;Dels=0.0;FS=1.471;HRun=0;HaplotypeScore=0.9987;MQ=59.51;MQ0=0;MQRankSum=-0.054;QD=6.85;ReadPosRankSum=0.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:27,20:47:99:352,0,837
17    11827113    rs28703615    C    A    321.19    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.39;DB;DP=48;Dels=0.0;FS=1.454;HRun=0;HaplotypeScore=0.9987;MQ=59.52;MQ0=0;MQRankSum=0.021;QD=6.69;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:27,21:48:99:351,0,959
17    11827353    rs2286300    T    C    1123.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=38.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,29:29:87.26:1157,87,0
17    11835321    rs2286305    C    T    6644.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DB;DP=203;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6671;MQ=59.66;MQ0=0;MQRankSum=-0.805;QD=32.73;ReadPosRankSum=1.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:1,202:203:99:6645,491,0
17    11840528    rs2240521    A    C    315.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:348,27,0
17    11845430    rs72815463    A    G    433.03    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.69;QD=24.06;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    0/1:5,13:18:99:463,0,150
17    11865110    rs11656157    G    A    2659.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7987;MQ=59.7;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262442    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2692,205,0
17    11865462    rs1990236    G    A    1664.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.325;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.645;QD=30.82;ReadPosRankSum=-1.461;SNPEFF_AMINO_ACID_CHANGE=M2880I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_11865184_11865573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAH9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413703    GT:AD:DP:GQ:PL    1/1:1,53:54:89.78:1697,90,0
17    11886864    rs17613212    T    C    112.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322748    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
17    11999147    rs3730339    G    A    677.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353533    GT:AD:DP:GQ:PL    1/1:0,19:19:54.14:711,54,0
17    12488114    rs12150051    C    A    1117.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC005358.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313495    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1151,84,0
17    12620761    rs12944823    A    G    175.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=15;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=11.72;ReadPosRankSum=1.827;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343344    GT:AD:DP:GQ:PL    0/1:9,6:15:99:206,0,310
17    12620897    rs12602716    G    A    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.02;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343344    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
17    12625926    rs10521200    G    A    70.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.12;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343344    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,127
17    12639294    rs1465249    T    C    480.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343344    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:513,39,0
17    12647490    rs12709295    T    C    1585.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343344    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1618,126,0
17    12656711    rs4792277    G    A    160.54    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7719;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=8.45;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343344    GT:AD:DP:GQ:PL    0/1:12,7:19:99:191,0,390
17    12659499    rs16946568    C    T    119.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343344    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:152,12,0
17    12664177    rs16946572    T    C    80.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395988    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
17    12799985    rs2302068    G    A    63.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=7.06;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:6,3:9:93.57:94,0,224
17    12819502    rs7225504    T    C    84.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
17    12844126    rs2072256    A    G    77.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:107,0,26
17    12844296    rs75445034    G    A    758.06    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=4.829;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.03;MQ0=0;MQRankSum=-0.103;QD=15.79;ReadPosRankSum=-1.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:23,25:48:99:788,0,690
17    12846708    rs767574    G    A    67.17    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.4;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:5,3:8:97.17:97,0,175
17    12847618    rs77150917    G    A    227.28    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=25.25;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:2,7:9:58.15:257,0,58
17    12852224    rs2270051    C    A    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
17    12855719    rs2072253    G    A    154.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=19.27;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:3,5:8:90.42:184,0,90
17    12862029    rs3213689    C    T    555.13    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=56;Dels=0.0;FS=7.883;HRun=0;HaplotypeScore=2.6005;MQ=51.61;MQ0=0;MQRankSum=0.904;QD=9.91;ReadPosRankSum=-0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:31,25:56:99:585,0,930
17    12862321    rs3815311    C    T    358.55    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.395;QD=9.69;ReadPosRankSum=-1.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:21,16:37:99:389,0,640
17    12883262    rs74868051    G    A    186.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=20.67;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:3,6:9:91.50:216,0,91
17    12897293    rs9915058    A    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    12898454    rs73981604    C    A    575.89    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.198;QD=17.45;ReadPosRankSum=-0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262444    GT:AD:DP:GQ:PL    0/1:16,17:33:99:606,0,536
17    12898994    rs2286338    C    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340825    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    12899726    rs4792308    A    G    205.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.95;MQ0=0;MQRankSum=-0.817;QD=14.66;ReadPosRankSum=-1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340825    GT:AD:DP:GQ:PL    0/1:6,8:14:99:235,0,174
17    12899963    rs11545302    T    C    205.89    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.969;DB;DP=23;Dels=0.0;FS=4.216;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.484;QD=8.95;ReadPosRankSum=-0.484;SNPEFF_AMINO_ACID_CHANGE=T198;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_12899864_12900002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457438    GT:AD:DP:GQ:PL    0/1:15,8:23:99:236,0,501
17    12903599    rs76549090    A    G    319.47    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.115;DB;DP=25;Dels=0.0;FS=1.58;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.68;QD=12.78;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:12,13:25:99:349,0,358
17    12905525    rs146168319    TG    T    197.69    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=57.5575;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=16.47;ReadPosRankSum=-2.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:5,7:12:99:237,0,189
17    12905574    rs55674356    T    A    663.94    PASS    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=31;Dels=0.0;FS=2.493;HRun=0;HaplotypeScore=0.9867;MQ=59.25;MQ0=0;MQRankSum=0.0;QD=21.42;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:9,22:31:99:694,0,230
17    12905743    rs55825263    G    A    429.13    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=17;Dels=0.0;FS=2.694;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.623;QD=25.24;ReadPosRankSum=1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:4,13:17:99:459,0,105
17    12908204    rs4792309    T    C    880.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.663;DB;DP=52;Dels=0.0;FS=3.096;HRun=0;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=16.94;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:26,26:52:99:911,0,864
17    12909046    rs3217019    A    AATC    2099.90    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.23;DB;DP=62;FS=2.445;HRun=0;HaplotypeScore=193.1244;IndelType=I;MQ=56.7;MQ0=0;MQRankSum=-0.49;QD=33.87;ReadPosRankSum=-0.816;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:27,34:62:99:2139,0,950
17    12914024    rs2302069    T    C    119.72    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.381;QD=8.55;ReadPosRankSum=-1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:8,5:13:99:150,0,293
17    12914795    rs73300518    G    C    78.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.69;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:109,0,31
17    12914920    rs41494747    A    G    588.64    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.797;DB;DP=49;Dels=0.0;FS=2.864;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.392;QD=12.01;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:24,25:49:99:619,0,744
17    12915009    rs4792311    G    A    999.29    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.578;DB;DP=68;Dels=0.0;FS=4.985;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.526;QD=14.7;ReadPosRankSum=-0.674;SNPEFF_AMINO_ACID_CHANGE=S198L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_12914980_12915099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395962    GT:AD:DP:GQ:PL    0/1:30,38:68:99:1029,0,770
17    12920260    rs58809197    A    G    1531.44    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.46;DB;DP=120;Dels=0.0;FS=6.768;HRun=0;HaplotypeScore=1.399;MQ=57.85;MQ0=0;MQRankSum=0.625;QD=12.76;ReadPosRankSum=0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338034    GT:AD:DP:GQ:PL    0/1:61,59:120:99:1561,0,2050
17    13399486    rs67951062    A    ATT    871.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=10;HaplotypeScore=76.7666;IndelType=I;MQ=43.99;MQ0=0;QD=37.89;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284110    GT:AD:DP:GQ:PL    1/1:2,20:23:65.44:914,65,0
17    13399616    rs62057033    A    T    777.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.35;MQ0=47;QD=10.65;SNPEFF_AMINO_ACID_CHANGE=P373;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_13399006_13400135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST3A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284110    GT:AD:DP:GQ:PL    1/1:23,49:73:69.20:810,69,0
17    13503831    rs191813363    G    A    78.33    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=13.06;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HS3ST3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284110    GT:AD:DP:GQ:PL    0/1:1,5:6:23.22:108,0,23
17    13927849    .    T    C    54.71    QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DP=28;Dels=0.0;FS=5.518;HRun=2;HaplotypeScore=0.6651;MQ=48.69;MQ0=4;MQRankSum=-3.022;QD=1.95;ReadPosRankSum=0.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COX10-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449363    GT:AD:DP:GQ:PL    0/1:20,8:28:84.71:85,0,523
17    13927856    .    T    C    98.76    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DP=30;Dels=0.0;FS=2.021;HRun=0;HaplotypeScore=0.0;MQ=47.89;MQ0=3;MQRankSum=-3.621;QD=3.29;ReadPosRankSum=0.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COX10-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449363    GT:AD:DP:GQ:PL    0/1:21,9:30:99:129,0,588
17    13927886    rs11649821    G    A    464.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.907;DB;DP=40;Dels=0.0;FS=1.258;HRun=1;HaplotypeScore=0.0;MQ=44.93;MQ0=4;MQRankSum=4.919;QD=11.6;ReadPosRankSum=-0.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COX10-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449363    GT:AD:DP:GQ:PL    0/1:20,20:40:99:494,0,375
17    13928093    rs62052313    G    A    59.47    MQFilter40    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=23;Dels=0.0;FS=5.315;HRun=0;HaplotypeScore=0.0;MQ=36.09;MQ0=6;MQRankSum=-0.623;QD=2.59;ReadPosRankSum=1.302;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC005304.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000389360    GT:AD:DP:GQ:PL    0/1:19,4:23:89.46:89,0,360
17    13928124    .    A    G    96.92    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=39.73;MQ0=7;MQRankSum=-2.84;QD=4.41;ReadPosRankSum=0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COX10-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449363    GT:AD:DP:GQ:PL    0/1:8,14:22:99:127,0,250
17    13928289    .    G    A    58.85    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.22;MQ0=1;MQRankSum=0.729;QD=5.89;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COX10-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449363    GT:AD:DP:GQ:PL    0/1:5,5:10:62:89,0,62
17    13972811    rs6502330    G    A    132.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
17    13972814    rs28680987    G    A    39.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.97;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    0/1:3,2:5:69.84:70,0,75
17    13977462    rs11870213    G    A    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
17    13977813    rs151129445    C    CTTTA    6311.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.0;HRun=0;HaplotypeScore=273.9284;IndelType=I;MQ=56.7;MQ0=0;QD=73.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    1/1:6,79:86:99:6312,244,0
17    14005373    rs1017076    C    T    2114    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2147,163,0
17    14005386    rs2108683    T    C    989.25    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.484;DB;DP=72;Dels=0.0;FS=4.142;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-1.628;QD=13.74;ReadPosRankSum=-0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    0/1:42,30:72:99:1019,0,1220
17    14005439    rs2159132    G    A    1415.82    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.821;DB;DP=105;Dels=0.0;FS=0.747;HRun=0;HaplotypeScore=1.8664;MQ=59.78;MQ0=0;MQRankSum=-0.403;QD=13.48;ReadPosRankSum=0.871;SNPEFF_AMINO_ACID_CHANGE=L168;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_14005435_14005559;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    0/1:53,52:105:99:1446,0,1683
17    14005647    rs3217030    C    CAT    781.69    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.114;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=134.3124;IndelType=I;MQ=60.7;MQ0=0;MQRankSum=-0.445;QD=16.99;ReadPosRankSum=0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    0/1:29,17:46:99:821,0,844
17    14005706    rs4486949    A    G    213.52    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=14.23;ReadPosRankSum=1.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    0/1:8,7:15:99:244,0,280
17    14063389    rs7212977    G    T    298.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:332,24,0
17    14095309    rs2230354    A    G    462.70    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.022;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.45;MQ0=2;MQRankSum=-0.68;QD=10.06;ReadPosRankSum=1.11;SNPEFF_AMINO_ACID_CHANGE=P16;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_14095306_14095538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537334    GT:AD:DP:GQ:PL    0/1:26,20:46:99:493,0,810
17    14095566    rs151441    T    C    178.35    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.741;DB;DP=81;Dels=0.0;FS=14.961;HRun=0;HaplotypeScore=1.79;MQ=39.63;MQ0=11;MQRankSum=-6.347;QD=2.2;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    0/1:54,27:81:99:208,0,1733
17    14095682    rs2158978    T    C    1108.61    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.816;DB;DP=100;Dels=0.0;FS=0.792;HRun=0;HaplotypeScore=0.734;MQ=47.1;MQ0=4;MQRankSum=-7.83;QD=11.09;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261643    GT:AD:DP:GQ:PL    0/1:42,57:100:99:1139,0,1202
17    14139414    rs146117581    C    G    157.18    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.04;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.64;MQ0=1;MQRankSum=-3.366;QD=9.25;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    0/1:8,9:17:99:187,0,219
17    14139472    .    C    T    131.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.861;DP=28;Dels=0.0;FS=2.021;HRun=0;HaplotypeScore=0.0;MQ=41.67;MQ0=1;MQRankSum=-2.139;QD=4.71;ReadPosRankSum=0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    0/1:18,9:28:99:162,0,598
17    14139565    rs4791563    T    C    663.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=56;Dels=0.0;FS=5.408;HRun=0;HaplotypeScore=1.6553;MQ=51.62;MQ0=0;MQRankSum=0.041;QD=11.63;ReadPosRankSum=-1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    0/1:32,24:56:99:693,0,1009
17    14139692    rs150694489    C    T    83.06    MQFilter40    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=1.854;DB;DP=41;Dels=0.0;FS=5.296;HRun=1;HaplotypeScore=0.0;MQ=37.14;MQ0=2;MQRankSum=-1.202;QD=2.03;ReadPosRankSum=-0.343;SNPEFF_AMINO_ACID_CHANGE=E106;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_14139599_14139747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    0/1:32,9:41:99:113,0,819
17    14139774    rs4791564    C    A    257.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.49;MQ0=5;QD=17.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    1/1:0,15:15:27.06:291,27,0
17    14139891    rs62052131    A    C    312.38    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.79;MQ0=4;QD=17.35;SNPEFF_AMINO_ACID_CHANGE=L87R;SNPEFF_CODON_CHANGE=cTt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_14139889_14140166;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    1/1:0,18:18:33.06:345,33,0
17    14140081    rs11651890    G    A    84.37    QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=2.978;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.51;MQ0=2;MQRankSum=-1.905;QD=1.21;ReadPosRankSum=-2.298;SNPEFF_AMINO_ACID_CHANGE=R24*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_14139889_14140166;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    0/1:59,11:70:99:114,0,1364
17    14140103    rs4792453    A    G    2228.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.97;MQ0=2;QD=25.04;SNPEFF_AMINO_ACID_CHANGE=N16;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_14139889_14140166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2261,183,0
17    14140191    rs28533558    G    A    479.50    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DB;DP=49;Dels=0.0;FS=11.368;HRun=0;HaplotypeScore=0.0;MQ=48.71;MQ0=0;MQRankSum=-0.021;QD=9.79;ReadPosRankSum=-0.686;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420162    GT:AD:DP:GQ:PL    0/1:27,22:49:99:509,0,872
17    14673431    rs72815721    C    A    243.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=15;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.298;QD=16.21;ReadPosRankSum=-0.648;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005863.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379640    GT:AD:DP:GQ:PL    0/1:6,9:15:99:273,0,206
17    15134175    rs13422    T    G    266.77    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.622;DB;DP=35;Dels=0.0;FS=8.352;HRun=1;HaplotypeScore=0.8321;MQ=59.34;MQ0=0;MQRankSum=1.333;QD=7.62;ReadPosRankSum=-2.683;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494511    GT:AD:DP:GQ:PL    0/1:24,11:35:99:297,0,748
17    15143011    rs230950    A    G    321.87    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.718;QD=21.46;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312280    GT:AD:DP:GQ:PL    0/1:4,11:15:90.30:352,0,90
17    15162389    rs231020    T    C    110.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.133;QD=7.36;ReadPosRankSum=-0.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471150    GT:AD:DP:GQ:PL    0/1:9,6:15:99:140,0,284
17    15207364    rs13961    T    G    881.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_AMINO_ACID_CHANGE=T454;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15207131_15207469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TEKT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338696    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:914,69,0
17    15217389    rs230897    G    A    276.94    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.297;DB;DP=34;Dels=0.0;FS=1.609;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.054;QD=8.15;ReadPosRankSum=-0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TEKT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338696    GT:AD:DP:GQ:PL    0/1:22,12:34:99:307,0,571
17    15217437    rs230898    C    G    357.11    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=42;Dels=0.0;FS=1.262;HRun=1;HaplotypeScore=1.5572;MQ=59.11;MQ0=0;MQRankSum=0.116;QD=8.5;ReadPosRankSum=0.433;SNPEFF_AMINO_ACID_CHANGE=G116A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15217404_15217547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TEKT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539245    GT:AD:DP:GQ:PL    0/1:29,13:42:99:387,0,836
17    15222535    rs11411664    C    CA    279.15    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.279;DB;DP=21;FS=0.0;HRun=3;HaplotypeScore=46.9468;IndelType=I;MQ=60.51;MQ0=0;MQRankSum=-0.38;QD=13.29;ReadPosRankSum=0.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TEKT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338696    GT:AD:DP:GQ:PL    0/1:12,9:21:99:318,0,336
17    15343524    rs79770715    C    CCTT    4301.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.0;HRun=0;HaplotypeScore=225.2178;IndelType=I;MQ=59.05;MQ0=0;QD=55.15;SNPEFF_AMINO_ACID_CHANGE=-10K;SNPEFF_CODON_CHANGE=-/AAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_17_15343525_15343599;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312177    GT:AD:DP:GQ:PL    1/1:12,65:77:99:4301,202,0
17    15443734    .    A    G    474.83    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.171;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=16.04;MQ0=83;MQRankSum=0.575;QD=3.86;ReadPosRankSum=0.192;SNPEFF_AMINO_ACID_CHANGE=W202R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15440295_15443875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428082    GT:AD:DP:GQ:PL    0/1:82,41:123:99:505,0,368
17    15443742    rs138309602    C    G    554.70    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=129;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.16;MQ0=87;MQRankSum=0.769;QD=4.3;ReadPosRankSum=-0.051;SNPEFF_AMINO_ACID_CHANGE=S199T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15440295_15443875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428082    GT:AD:DP:GQ:PL    0/1:86,43:129:99:585,0,369
17    15458722    rs148282820    T    C    663    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.231;DB;DP=51;Dels=0.0;FS=1.715;HRun=0;HaplotypeScore=2.9175;MQ=49.98;MQ0=0;MQRankSum=0.445;QD=13.0;ReadPosRankSum=-1.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDRT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520956    GT:AD:DP:GQ:PL    0/1:23,28:51:99:693,0,702
17    15492110    rs151443    C    T    378.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.57;MQ0=2;QD=27.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472534    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:412,36,0
17    15492409    rs151442    T    C    829.96    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.644;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=25.85;MQ0=17;MQRankSum=-1.436;QD=15.96;ReadPosRankSum=0.347;SNPEFF_AMINO_ACID_CHANGE=A213;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15491702_15492541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDRT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354433    GT:AD:DP:GQ:PL    1/1:1,51:52:41.20:863,41,0
17    15492426    rs28445278    C    T    227    MQFilter40    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.78;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.19;MQ0=17;MQRankSum=-1.067;QD=3.72;ReadPosRankSum=-3.044;SNPEFF_AMINO_ACID_CHANGE=V208M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15491702_15492541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDRT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354433    GT:AD:DP:GQ:PL    0/1:44,17:61:99:257,0,810
17    15496727    rs79385100    T    G    2471.24    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.911;DB;DP=213;Dels=0.0;FS=1.114;HRun=1;HaplotypeScore=2.4258;MQ=53.75;MQ0=1;MQRankSum=0.013;QD=11.6;ReadPosRankSum=-0.316;SNPEFF_AMINO_ACID_CHANGE=N144H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15496651_15496809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDRT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354433    GT:AD:DP:GQ:PL    0/1:116,97:213:99:2501,0,3585
17    15496730    rs8078150    A    G    2479.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.012;DB;DP=209;Dels=0.0;FS=0.532;HRun=1;HaplotypeScore=1.7882;MQ=53.6;MQ0=1;MQRankSum=0.752;QD=11.86;ReadPosRankSum=-0.409;SNPEFF_AMINO_ACID_CHANGE=F143L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15496651_15496809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDRT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354433    GT:AD:DP:GQ:PL    0/1:114,95:209:99:2509,0,3413
17    15499737    rs762697    A    G    77.63    MQFilter40    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.39;MQ0=11;MQRankSum=-2.107;QD=2.59;ReadPosRankSum=-0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354433    GT:AD:DP:GQ:PL    0/1:13,17:30:99:108,0,360
17    15500031    rs3217025    GA    G    192.74    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=10;FS=0.0;HRun=3;HaplotypeScore=23.4607;IndelType=D;MQ=49.56;MQ0=0;MQRankSum=0.067;QD=19.27;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354433    GT:AD:DP:GQ:PL    0/1:3,7:10:59.38:232,0,59
17    15508447    rs2190757    C    A    139.29    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=40.66;MQ0=0;MQRankSum=-0.111;QD=6.06;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-385D13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261644    GT:AD:DP:GQ:PL    0/1:16,7:23:99:169,0,526
17    15508521    rs2190756    T    C    32.34    MQFilter40;QDFilter2    AB=0.887;AC=1;AF=0.50;AN=2;BaseQRankSum=2.372;DB;DP=53;Dels=0.0;FS=30.401;HRun=1;HaplotypeScore=0.9933;MQ=36.78;MQ0=0;MQRankSum=0.323;QD=0.61;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-385D13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261644    GT:AD:DP:GQ:PL    0/1:47,6:53:62.33:62,0,1192
17    15554744    rs188307419    G    A    2112.53    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=4.314;DB;DP=167;Dels=0.0;FS=2.054;HRun=0;HaplotypeScore=3.1939;MQ=58.92;MQ0=0;MQRankSum=0.538;QD=12.65;ReadPosRankSum=1.361;SNPEFF_AMINO_ACID_CHANGE=S60;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15554405_15555260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336708    GT:AD:DP:GQ:PL    0/1:88,79:167:99:2143,0,2154
17    15578852    rs110675    G    A    902.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.418;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.16;MQ0=0;MQRankSum=0.368;QD=26.54;ReadPosRankSum=0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336708    GT:AD:DP:GQ:PL    1/1:1,33:34:41.60:935,42,0
17    15604395    rs77257979    T    C    659.75    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=4.907;DB;DP=85;Dels=0.0;FS=3.064;HRun=0;HaplotypeScore=0.8321;MQ=45.98;MQ0=7;MQRankSum=-3.847;QD=7.76;ReadPosRankSum=-1.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395893    GT:AD:DP:GQ:PL    0/1:39,46:85:99:690,0,1192
17    15604396    rs4792654    G    A    656.73    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.243;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=46.07;MQ0=7;MQRankSum=-4.12;QD=7.55;ReadPosRankSum=-2.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395893    GT:AD:DP:GQ:PL    0/1:39,48:87:99:687,0,1250
17    15604444    rs4792655    A    G    1998.91    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.435;DB;DP=167;Dels=0.0;FS=0.642;HRun=0;HaplotypeScore=3.2367;MQ=49.33;MQ0=6;MQRankSum=-2.677;QD=11.97;ReadPosRankSum=1.679;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395893    GT:AD:DP:GQ:PL    0/1:73,94:167:99:2029,0,2216
17    15604448    rs141604718    C    T    2161.05    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.732;DB;DP=170;Dels=0.0;FS=1.317;HRun=1;HaplotypeScore=4.0688;MQ=49.49;MQ0=5;MQRankSum=4.132;QD=12.71;ReadPosRankSum=-0.874;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395893    GT:AD:DP:GQ:PL    0/1:98,72:170:99:2191,0,2426
17    15607777    rs62071718    A    G    437.72    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=0.784;DB;DP=23;Dels=0.0;FS=2.172;HRun=1;HaplotypeScore=0.0;MQ=47.32;MQ0=1;MQRankSum=-0.784;QD=19.03;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395893    GT:AD:DP:GQ:PL    0/1:6,17:23:99:468,0,129
17    15607958    rs62071719    G    A    294.76    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=22;Dels=0.0;FS=2.251;HRun=0;HaplotypeScore=0.0;MQ=35.25;MQ0=4;MQRankSum=0.725;QD=13.4;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395893    GT:AD:DP:GQ:PL    0/1:10,12:22:99:325,0,190
17    15611495    rs3760299    T    C    449.41    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=41;Dels=0.0;FS=4.457;HRun=1;HaplotypeScore=1.7128;MQ=59.44;MQ0=0;MQRankSum=0.807;QD=10.96;ReadPosRankSum=-0.834;SNPEFF_AMINO_ACID_CHANGE=Y80H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15611469_15611561;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412988    GT:AD:DP:GQ:PL    0/1:24,17:41:99:479,0,739
17    15613021    rs2654397    C    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=42.61;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481540    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,105
17    15613114    rs146333759    AT    A    554.77    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=4.911;DB;DP=43;FS=4.263;HRun=8;HaplotypeScore=106.3055;IndelType=D;MQ=50.9;MQ0=0;MQRankSum=0.972;QD=12.9;ReadPosRankSum=-1.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481540    GT:AD:DP:GQ:PL    0/1:18,25:43:99:594,0,523
17    15620481    rs2530064    C    T    96.73    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.97;MQ0=4;MQRankSum=-2.083;QD=4.21;ReadPosRankSum=-0.046;SNPEFF_AMINO_ACID_CHANGE=L471;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15619373_15620627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412988    GT:AD:DP:GQ:PL    0/1:14,9:23:99:127,0,457
17    15620647    rs61435333    G    A    213.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.46;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF286A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472486    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:246,21,0
17    15640647    .    A    G    31.98    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=21.51;MQ0=1;MQRankSum=0.55;QD=4.0;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437605    GT:AD:DP:GQ:PL    0/1:4,4:8:61.97:62,0,90
17    15640815    .    A    G    123    MQFilter40    AB=0.045;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DP=22;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.9933;MQ=14.1;MQ0=14;MQRankSum=-0.747;QD=5.59;ReadPosRankSum=-0.747;SNPEFF_AMINO_ACID_CHANGE=H59R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_15640798_15640837;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437605    GT:AD:DP:GQ:PL    0/1:1,21:22:6.64:153,0,7
17    15643381    rs142114209    CA    C    1505.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.0;HRun=10;HaplotypeScore=194.4369;IndelType=D;MQ=54.64;MQ0=1;QD=21.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464963    GT:AD:DP:GQ:PL    1/1:7,64:69:99:1548,180,0
17    15643719    rs62072379    G    A    128.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.99;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464963    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
17    15644506    rs11650318    C    T    1192.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437605    GT:AD:DP:GQ:PL    1/1:0,38:38:93.28:1226,93,0
17    15644745    rs62072380    G    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437605    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    15645289    rs17855672    G    A    653.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437605    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:687,51,0
17    15646850    rs57267059    A    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437605    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
17    15668330    rs2955833    G    C    589.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.3;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.14;MQ0=0;MQRankSum=-1.734;QD=22.69;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC015922.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420606    GT:AD:DP:GQ:PL    1/1:1,25:26:16.51:623,17,0
17    15668720    rs935147    C    G    162.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.47;MQ0=1;QD=20.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC015922.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420606    GT:AD:DP:GQ:PL    1/1:0,8:8:18.03:195,18,0
17    15668775    rs1814454    A    G    191.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.01;MQ0=0;QD=21.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC015922.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420606    GT:AD:DP:GQ:PL    1/1:0,9:9:21.04:224,21,0
17    15688159    rs11867683    T    C    560.07    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.076;DB;DP=34;Dels=0.0;FS=5.598;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.092;QD=16.47;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516020    GT:AD:DP:GQ:PL    0/1:14,20:34:99:590,0,448
17    15689939    rs533073    A    G    168.27    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.57;MQ0=0;MQRankSum=-0.101;QD=12.94;ReadPosRankSum=1.093;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516020    GT:AD:DP:GQ:PL    0/1:6,7:13:99:198,0,132
17    15690046    rs62070980    C    T    66.75    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=29.54;MQ0=1;MQRankSum=1.034;QD=5.56;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516020    GT:AD:DP:GQ:PL    0/1:7,5:12:96.75:97,0,164
17    15690281    rs62070982    C    T    121.75    MQFilter40    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=34.37;MQ0=5;MQRankSum=0.839;QD=6.41;ReadPosRankSum=-1.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516020    GT:AD:DP:GQ:PL    0/1:13,6:19:99:152,0,194
17    15690664    rs184311786    G    A    406.30    MQFilter40    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=54;Dels=0.0;FS=1.313;HRun=0;HaplotypeScore=0.0;MQ=38.91;MQ0=0;MQRankSum=0.009;QD=7.52;ReadPosRankSum=0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516020    GT:AD:DP:GQ:PL    0/1:34,20:54:99:436,0,837
17    15690793    rs534861    T    C    948.04    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.257;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=54.74;MQ0=0;MQRankSum=0.638;QD=14.15;ReadPosRankSum=-0.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=IL6STP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346911    GT:AD:DP:GQ:PL    0/1:30,37:67:99:978,0,764
17    15690888    rs4791638    C    G    481.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.291;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.65;MQ0=0;MQRankSum=0.783;QD=16.04;ReadPosRankSum=-0.064;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=IL6STP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346911    GT:AD:DP:GQ:PL    0/1:12,18:30:99:511,0,390
17    15691119    rs1054119    C    A    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=5.99;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=IL6STP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346911    GT:AD:DP:GQ:PL    0/1:4,2:6:65.94:66,0,124
17    15881728    rs2109632    A    G    72.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADORA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304222    GT:AD:DP:GQ:PL    1/1:0,3:3:9:104,9,0
17    15884561    rs10491104    C    T    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=27.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZSWIM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399277    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:168,12,0
17    15903602    rs758853    C    A    160.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261647    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
17    15905190    rs3760298    A    G    696.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=38.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261647    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:729,54,0
17    15909728    rs3760297    A    G    984.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9663;MQ=59.32;MQ0=0;QD=28.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466729    GT:AD:DP:GQ:PL    1/1:0,34:34:87.23:1018,87,0
17    15928584    rs2301652    T    G    206.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261647    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
17    15930087    rs35168566    G    A    301.63    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=1.044;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.044;QD=30.16;ReadPosRankSum=-1.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:1,9:10:7.70:331,0,8
17    15943910    rs1075901    T    C    223.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC002553.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442828    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:257,21,0
17    15950198    rs1079533    G    A    632.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395886    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:665,51,0
17    15961951    rs2157991    A    G    1390.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1423,105,0
17    15961993    rs2157990    T    A    688.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:722,57,0
17    15962044    rs112205421    T    G    112.46    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=16.07;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:2,5:7:67.23:142,0,67
17    15965696    rs35950476    AAAAC    A    358.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=40.4902;IndelType=D;MQ=56.88;MQ0=0;QD=44.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:400,21,0
17    15968143    rs2285583    T    C    1037.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1070,78,0
17    15968549    rs3815038    A    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    15968673    rs2285582    G    A    233.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:267,21,0
17    15973417    .    GT    G    33.17    QDFilter2    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=1.949;DP=72;FS=0.0;HRun=17;HaplotypeScore=699.9851;IndelType=D;MQ=51.4;MQ0=0;MQRankSum=-1.691;QD=0.46;ReadPosRankSum=-1.536;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:46,12:72:72.20:72,0,649
17    15973844    rs12942295    A    T    1480.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.485;DB;DP=42;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.578;QD=35.25;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:1,41:42:77.73:1513,78,0
17    15977005    rs11078330    A    T    130.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:163,12,0
17    16004368    rs7207889    C    T    200.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
17    16011493    rs35417050    CA    C    50.27    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.256;DB;DP=28;FS=0.0;HRun=18;HaplotypeScore=186.41;IndelType=D;MQ=52.97;MQ0=0;MQRankSum=0.967;QD=1.8;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:8,13:28:4.10:90,4,0
17    16024701    rs34854811    C    CA    162.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=12;HaplotypeScore=20.8474;IndelType=I;MQ=57.05;MQ0=0;QD=20.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411510    GT:AD:DP:GQ:PL    1/1:2,6:8:21.03:204,21,0
17    16041306    rs2324142    C    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    16041636    rs2875265    T    C    146.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:180,15,0
17    16046845    rs2285579    A    T    532.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:566,45,0
17    16049626    rs11078333    A    T    1020.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=25.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1054,102,0
17    16056442    rs178659    C    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
17    16068234    .    A    T    63.77    QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.04;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=50.3;MQ0=2;MQRankSum=-4.768;QD=1.64;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:26,13:39:93.76:94,0,923
17    16068240    .    A    T    115.59    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=1.306;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.26;MQ0=2;MQRankSum=-5.142;QD=2.63;ReadPosRankSum=-0.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:29,15:44:99:146,0,994
17    16068252    .    C    A    127.16    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=2.25;DP=59;Dels=0.0;FS=7.713;HRun=3;HaplotypeScore=2.9139;MQ=49.68;MQ0=2;MQRankSum=-6.091;QD=2.16;ReadPosRankSum=0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:37,21:59:99:157,0,1218
17    16068278    .    A    G    115.40    QDFilter2    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=0.28;DP=77;Dels=0.0;FS=13.258;HRun=1;HaplotypeScore=0.5784;MQ=51.1;MQ0=5;MQRankSum=-6.327;QD=1.5;ReadPosRankSum=3.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:54,23:77:99:145,0,1845
17    16068287    .    A    T    167.52    QDFilter2    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=3.459;DP=85;Dels=0.0;FS=19.242;HRun=3;HaplotypeScore=1.4942;MQ=49.56;MQ0=5;MQRankSum=-7.041;QD=1.97;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:55,29:85:99:198,0,1775
17    16068340    rs76780359    C    T    573.22    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.82;DB;DP=117;Dels=0.0;FS=54.226;HRun=3;HaplotypeScore=0.9469;MQ=48.36;MQ0=3;MQRankSum=-8.838;QD=4.9;ReadPosRankSum=1.091;SNPEFF_AMINO_ACID_CHANGE=E191K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16068293_16068475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:72,45:117:99:603,0,2263
17    16068343    rs78230791    G    A    612.14    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=5.341;DB;DP=120;Dels=0.0;FS=41.85;HRun=1;HaplotypeScore=0.0;MQ=48.25;MQ0=3;MQRankSum=-8.612;QD=5.1;ReadPosRankSum=1.171;SNPEFF_AMINO_ACID_CHANGE=R190*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_16068293_16068475;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:73,47:120:99:642,0,2073
17    16068362    rs76375524    C    T    883.67    HaplotypeScoreFilter13    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.838;DB;DP=117;Dels=0.0;FS=45.97;HRun=1;HaplotypeScore=17.0287;MQ=47.08;MQ0=1;MQRankSum=-8.284;QD=7.55;ReadPosRankSum=1.086;SNPEFF_AMINO_ACID_CHANGE=Q183;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16068293_16068475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:62,55:117:99:914,0,2028
17    16068377    .    C    G    883.94    HaplotypeScoreFilter13    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.977;DP=118;Dels=0.0;FS=21.306;HRun=0;HaplotypeScore=13.8394;MQ=45.7;MQ0=2;MQRankSum=-7.901;QD=7.49;ReadPosRankSum=-1.156;SNPEFF_AMINO_ACID_CHANGE=K178N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16068293_16068475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:61,57:118:99:914,0,2008
17    16068383    .    G    A    959    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DP=131;Dels=0.0;FS=26.751;HRun=1;HaplotypeScore=0.6651;MQ=46.66;MQ0=3;MQRankSum=-7.64;QD=7.32;ReadPosRankSum=-1.066;SNPEFF_AMINO_ACID_CHANGE=L176;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16068293_16068475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:68,63:131:99:989,0,2153
17    16068396    rs150910818    G    A    1491.92    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.463;DB;DP=150;Dels=0.0;FS=10.147;HRun=2;HaplotypeScore=1.4725;MQ=45.12;MQ0=8;MQRankSum=-8.99;QD=9.95;ReadPosRankSum=-2.749;SNPEFF_AMINO_ACID_CHANGE=S172L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16068293_16068475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:67,83:150:99:1522,0,2115
17    16068463    rs74453660    C    T    283.38    QDFilter2    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=4.326;DB;DP=186;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.74;MQ0=18;MQRankSum=-3.811;QD=1.52;ReadPosRankSum=-0.356;SNPEFF_AMINO_ACID_CHANGE=G150R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16068293_16068475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:153,33:186:99:313,0,3612
17    16068506    .    T    C    1428.84    PASS    AB=0.306;AC=1;AF=0.50;AN=2;BaseQRankSum=2.052;DP=108;Dels=0.0;FS=10.908;HRun=0;HaplotypeScore=0.8941;MQ=41.87;MQ0=8;MQRankSum=-5.281;QD=13.23;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:33,75:108:99:1459,0,1038
17    16068545    rs77374546    A    C    379.68    MQFilter40    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.22;MQ0=4;MQRankSum=-3.993;QD=9.04;ReadPosRankSum=-0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:17,25:42:99:410,0,544
17    16097825    rs73281920    T    G    103.52    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=2.552;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1001;MQ=54.81;MQ0=2;MQRankSum=-5.081;QD=1.34;ReadPosRankSum=-2.167;SNPEFF_AMINO_ACID_CHANGE=Y20S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16097776_16097953;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:65,12:77:99:134,0,1984
17    16097870    rs76145228    C    A    185.86    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=103;Dels=0.0;FS=6.205;HRun=2;HaplotypeScore=0.9665;MQ=54.06;MQ0=4;MQRankSum=-6.444;QD=1.8;ReadPosRankSum=2.793;SNPEFF_AMINO_ACID_CHANGE=G5V;SNPEFF_CODON_CHANGE=gGt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16097776_16097953;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:83,20:103:99:216,0,2293
17    16097899    rs149293452    C    T    179.83    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=98;Dels=0.0;FS=9.072;HRun=1;HaplotypeScore=0.734;MQ=53.74;MQ0=4;MQRankSum=-6.324;QD=1.84;ReadPosRankSum=-1.964;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_16097776_16097953;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268712    GT:AD:DP:GQ:PL    0/1:79,19:98:99:210,0,2357
17    16185248    rs3785626    T    G    173.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225609    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
17    16219792    rs1005380    C    T    74.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225609    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
17    16221271    rs144731491    A    AC    1553.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=4;HaplotypeScore=146.2278;IndelType=I;MQ=60.11;MQ0=0;QD=38.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498772    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1596,117,0
17    16221319    rs9890539    T    C    963.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498772    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:996,78,0
17    16229232    rs15739    A    G    932.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=32.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477745    GT:AD:DP:GQ:PL    1/1:0,29:29:69.23:966,69,0
17    16246016    rs7477    A    C    554.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482983    GT:AD:DP:GQ:PL    1/1:0,17:18:45.15:587,45,0
17    16248083    rs9907546    T    A    741.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299736    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:774,60,0
17    16251859    rs2286666    A    G    1818.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299736    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1851,156,0
17    16256240    rs3095172    C    A    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299736    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
17    16323589    rs4273076    C    A    2359.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7342;MQ=55.08;MQ0=0;QD=30.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2393,184,0
17    16323608    rs68189233    ATAGT    A    3070.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=527.3805;IndelType=D;MQ=53.45;MQ0=1;QD=50.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:5,55:60:99:3112,166,0
17    16323738    rs4629007    A    G    289.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:323,24,0
17    16325968    rs8121    A    G    695.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_AMINO_ACID_CHANGE=G130;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16325913_16326203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:729,54,0
17    16326005    rs1129235    A    C    418.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_AMINO_ACID_CHANGE=R143;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16325913_16326203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:451,39,0
17    16326253    rs7225104    G    T    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
17    16329745    rs7222754    C    T    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    16330280    rs151033397    G    A    207.98    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=13.87;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    0/1:7,8:15:99:238,0,215
17    16331820    rs4792742    T    C    668.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:701,57,0
17    16335191    rs34786363    C    A    1200.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,41:41:96.30:1234,96,0
17    16336828    rs7213055    G    A    1709.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1743,132,0
17    16336992    rs14039    C    G    1365    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=P698;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16336888_16337012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338560    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1398,114,0
17    16340316    rs7214366    A    C    225.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409887    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:258,21,0
17    16342813    rs4072454    T    C    2460.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=36.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409083    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2493,187,0
17    16344314    rs55710649    A    ACT    4814.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;FS=0.0;HRun=0;HaplotypeScore=194.1462;IndelType=I;MQ=61.32;MQ0=0;QD=54.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409083    GT:AD:DP:GQ:PL    1/1:1,86:88:99:4814,262,0
17    16344523    rs146361133    C    CA    183.11    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.029;DB;DP=33;FS=13.704;HRun=10;HaplotypeScore=160.9162;IndelType=I;MQ=58.21;MQ0=0;MQRankSum=0.29;QD=5.55;ReadPosRankSum=0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409083    GT:AD:DP:GQ:PL    0/1:23,9:33:99:222,0,316
17    16344600    rs4617905    T    C    832.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.72;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409083    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:865,66,0
17    16344601    rs4622550    G    C    787.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=31.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409083    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:820,66,0
17    16346932    rs4792745    G    T    281.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=23.49;SNPEFF_AMINO_ACID_CHANGE=G335;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16346575_16347445;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000470794    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:315,24,0
17    16347567    rs4438345    T    G    90.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409083    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
17    16351041    rs12949081    G    A    206.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C17orf76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409083    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:239,18,0
17    16520433    rs4792757    C    G    319.60    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=30;Dels=0.0;FS=3.473;HRun=1;HaplotypeScore=1.9846;MQ=46.5;MQ0=2;MQRankSum=0.998;QD=10.65;ReadPosRankSum=-1.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF624;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311331    GT:AD:DP:GQ:PL    0/1:13,17:30:99:350,0,317
17    16527795    rs8065506    C    A    949.54    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.19;DB;DP=57;Dels=0.0;FS=4.597;HRun=0;HaplotypeScore=2.8836;MQ=58.44;MQ0=0;MQRankSum=1.557;QD=16.66;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=K135N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16524051_16527823;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF624;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311331    GT:AD:DP:GQ:PL    0/1:23,34:57:99:980,0,719
17    16537082    rs17791901    A    G    174.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=19.43;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF624;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423860    GT:AD:DP:GQ:PL    0/1:3,6:9:92.15:205,0,92
17    16537372    rs60858649    CA    C    185.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=37.685;IndelType=D;MQ=62.36;MQ0=0;MQRankSum=0.248;QD=20.64;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF624;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311331    GT:AD:DP:GQ:PL    0/1:3,6:9:99:225,0,117
17    16537397    rs9911677    T    C    63.24    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=0.922;QD=9.03;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF624;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311331    GT:AD:DP:GQ:PL    0/1:2,5:7:68.42:93,0,68
17    16538181    rs8075988    C    T    337.01    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=25.92;ReadPosRankSum=-0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF624;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311331    GT:AD:DP:GQ:PL    0/1:2,11:13:9.54:367,0,10
17    16550817    rs7218241    C    T    122.74    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.927;QD=8.77;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF624;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311331    GT:AD:DP:GQ:PL    0/1:9,5:14:99:153,0,284
17    16552913    rs28626982    C    A    176.91    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.682;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.7733;MQ=58.55;MQ0=0;MQRankSum=0.652;QD=11.06;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF624;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311331    GT:AD:DP:GQ:PL    0/1:7,9:16:99:207,0,252
17    16587108    rs28634753    C    T    360.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=43;Dels=0.0;FS=2.999;HRun=0;HaplotypeScore=0.9665;MQ=59.33;MQ0=0;MQRankSum=0.234;QD=8.38;ReadPosRankSum=0.454;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC098850.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419919    GT:AD:DP:GQ:PL    0/1:28,14:43:99:390,0,871
17    16593798    rs2349265    C    T    978.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.685;DB;DP=64;Dels=0.0;FS=3.561;HRun=0;HaplotypeScore=0.0;MQ=52.77;MQ0=1;MQRankSum=-0.353;QD=15.3;ReadPosRankSum=0.945;SNPEFF_AMINO_ACID_CHANGE=S28;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16593546_16594058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340621    GT:AD:DP:GQ:PL    0/1:32,32:64:99:1009,0,813
17    16613616    rs3101952    G    A    177.72    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.96;MQ0=1;MQRankSum=-2.878;QD=11.11;ReadPosRankSum=0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399264    GT:AD:DP:GQ:PL    0/1:5,11:16:99:208,0,164
17    16635980    rs61179727    G    A    1004.75    MQFilter40    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.475;DB;DP=67;Dels=0.0;FS=1.784;HRun=1;HaplotypeScore=1.8664;MQ=38.76;MQ0=1;MQRankSum=1.259;QD=15.0;ReadPosRankSum=-0.938;SNPEFF_AMINO_ACID_CHANGE=E526;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16635852_16635980;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456009    GT:AD:DP:GQ:PL    0/1:32,35:67:99:1035,0,1014
17    16640908    rs2261445    G    C    58    MQFilter40;QDFilter2    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=9.29;MQ0=89;MQRankSum=0.278;QD=0.58;ReadPosRankSum=0.678;SNPEFF_AMINO_ACID_CHANGE=T863;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16640852_16640989;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456009    GT:AD:DP:GQ:PL    0/1:52,48:100:88:88,0,149
17    16699832    rs778672    G    A    267.83    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.48;DB;DP=31;Dels=0.0;FS=4.357;HRun=0;HaplotypeScore=0.0;MQ=47.86;MQ0=0;MQRankSum=-0.547;QD=8.64;ReadPosRankSum=-0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443444    GT:AD:DP:GQ:PL    0/1:19,12:31:99:298,0,700
17    16701859    rs778675    C    T    188.78    MQFilter40    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=2.597;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.77;MQ0=8;MQRankSum=0.057;QD=3.31;ReadPosRankSum=0.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443444    GT:AD:DP:GQ:PL    0/1:40,17:57:99:219,0,572
17    16721538    rs2688024    T    C    67.21    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.44;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC022596.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445583    GT:AD:DP:GQ:PL    0/1:2,3:5:32.73:97,0,33
17    16725570    rs2621711    G    A    846.51    PASS    AB=0.293;AC=1;AF=0.50;AN=2;BaseQRankSum=0.325;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=52.38;MQ0=1;MQRankSum=-0.872;QD=20.65;ReadPosRankSum=0.325;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC022596.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417510    GT:AD:DP:GQ:PL    0/1:12,29:41:99:877,0,274
17    16734809    rs2688010    A    G    408    MQFilter40    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.36;DB;DP=48;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.9469;MQ=38.57;MQ0=5;MQRankSum=-4.243;QD=8.5;ReadPosRankSum=1.431;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399048    GT:AD:DP:GQ:PL    0/1:19,29:48:99:438,0,537
17    16734869    rs62074145    A    G    231.25    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.441;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.23;MQ0=1;MQRankSum=-3.617;QD=8.56;ReadPosRankSum=0.354;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399048    GT:AD:DP:GQ:PL    0/1:13,14:27:99:261,0,417
17    16734971    rs62074146    A    T    110.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=10;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=0.0;MQ=41.47;MQ0=1;MQRankSum=-2.219;QD=11.01;ReadPosRankSum=-0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399048    GT:AD:DP:GQ:PL    0/1:4,6:10:99:140,0,137
17    16735480    rs77849614    G    A    53.34    MQFilter40    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5986;MQ=33.96;MQ0=8;MQRankSum=-3.62;QD=2.05;ReadPosRankSum=-1.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399048    GT:AD:DP:GQ:PL    0/1:9,17:26:83.34:83,0,279
17    16735532    rs2456092    T    C    78.23    QDFilter2    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.08;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=40.08;MQ0=10;MQRankSum=-5.551;QD=1.45;ReadPosRankSum=-0.111;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399048    GT:AD:DP:GQ:PL    0/1:25,28:54:99:108,0,873
17    16735618    rs645134    G    A    1489.74    MQFilter40    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=3.775;DB;DP=111;Dels=0.0;FS=4.266;HRun=0;HaplotypeScore=0.5784;MQ=37.23;MQ0=2;MQRankSum=-4.256;QD=13.42;ReadPosRankSum=1.612;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399048    GT:AD:DP:GQ:PL    0/1:36,75:111:99:1520,0,905
17    16736027    rs151320551    A    G    82.57    MQFilter40    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=22.33;MQ0=7;MQRankSum=-0.415;QD=2.12;ReadPosRankSum=-0.512;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399048    GT:AD:DP:GQ:PL    0/1:27,11:39:99:113,0,485
17    16736080    .    G    A    106.28    MQFilter40    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.64;MQ0=20;MQRankSum=-0.298;QD=2.42;ReadPosRankSum=-1.133;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399048    GT:AD:DP:GQ:PL    0/1:21,23:44:99:136,0,99
17    16744291    .    C    G    105.60    MQFilter40    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.04;MQ0=9;MQRankSum=1.866;QD=5.56;ReadPosRankSum=-0.741;SNPEFF_AMINO_ACID_CHANGE=C415S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16744057_16744353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399211    GT:AD:DP:GQ:PL    0/1:10,9:19:26.38:136,0,26
17    16745092    rs590673    G    A    743.09    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=4.819;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=48.43;MQ0=6;MQRankSum=-5.385;QD=9.91;ReadPosRankSum=1.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:37,38:75:99:773,0,975
17    16745114    rs2656382    T    A    743.83    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.042;DB;DP=83;Dels=0.0;FS=0.932;HRun=0;HaplotypeScore=1.4105;MQ=48.95;MQ0=7;MQRankSum=-6.072;QD=8.96;ReadPosRankSum=1.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:44,39:83:99:774,0,1244
17    16745184    rs57771185    GA    G    461.65    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=3.41;DB;DP=82;FS=15.62;HRun=11;HaplotypeScore=337.4659;IndelType=D;MQ=45.86;MQ0=5;MQRankSum=-1.451;QD=5.25;ReadPosRankSum=-1.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:57,30:82:99:501,0,1020
17    16745274    rs3883349    C    T    204.57    MQFilter40    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=64;Dels=0.0;FS=1.885;HRun=1;HaplotypeScore=0.0;MQ=38.35;MQ0=9;MQRankSum=1.28;QD=3.2;ReadPosRankSum=-0.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:51,13:64:99:235,0,915
17    16746358    rs682770    G    A    725.47    HaplotypeScoreFilter13;MQFilter40    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.533;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.4169;MQ=31.34;MQ0=10;MQRankSum=0.921;QD=9.94;ReadPosRankSum=-0.064;SNPEFF_AMINO_ACID_CHANGE=R230*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_16746212_16746373;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399211    GT:AD:DP:GQ:PL    0/1:27,46:73:99:755,0,378
17    16746365    rs682755    G    A    204.31    HaplotypeScoreFilter13;MQFilter40    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DB;DP=64;Dels=0.0;FS=4.65;HRun=0;HaplotypeScore=18.4169;MQ=29.71;MQ0=10;MQRankSum=-0.468;QD=3.19;ReadPosRankSum=-0.908;SNPEFF_AMINO_ACID_CHANGE=N227;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16746212_16746373;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399211    GT:AD:DP:GQ:PL    0/1:45,19:64:99:234,0,726
17    16746881    rs139875800    C    T    244.48    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.078;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7892;MQ=35.52;MQ0=2;MQRankSum=-0.726;QD=7.64;ReadPosRankSum=-0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:22,10:32:99:274,0,436
17    16746950    rs680043    C    T    463.06    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.193;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=26.94;MQ0=9;MQRankSum=1.871;QD=5.94;ReadPosRankSum=-2.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:48,30:78:99:493,0,473
17    16747452    rs140351738    C    T    42.80    MQFilter40    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.18;MQ0=2;MQRankSum=1.294;QD=3.06;ReadPosRankSum=-0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:11,3:14:72.79:73,0,261
17    16748666    rs78187481    T    C    1193.48    MQFilter40    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=1.192;DB;DP=94;Dels=0.0;FS=4.768;HRun=5;HaplotypeScore=5.0359;MQ=39.19;MQ0=2;MQRankSum=-3.344;QD=12.7;ReadPosRankSum=-1.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:36,58:94:99:1223,0,872
17    16748785    rs648867    T    C    141.09    MQFilter40;QDFilter2    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5774;MQ=15.59;MQ0=61;MQRankSum=-1.505;QD=1.62;ReadPosRankSum=0.027;SNPEFF_AMINO_ACID_CHANGE=V115;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16748695_16749195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT17P1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340966    GT:AD:DP:GQ:PL    0/1:52,35:87:99:171,0,362
17    16796691    rs6502530    C    T    577.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.61;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,18:19:45.13:610,45,0
17    16827839    rs3752008    G    A    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261651    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,74
17    16828558    rs3752007    A    G    76.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437538    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
17    16855878    rs8072293    C    T    705.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=28.23;SNPEFF_AMINO_ACID_CHANGE=T27;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16855760_16855897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF13B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261652    GT:AD:DP:GQ:PL    1/1:0,25:25:57.18:739,57,0
17    16946073    .    C    CG    175.68    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=2;HaplotypeScore=90.6226;IndelType=I;MQ=53.95;MQ0=0;QD=21.96;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    1/1:2,6:8:15.05:217,15,0
17    16946343    rs61242604    G    C    289.99    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.785;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=58.99;MQ0=0;MQRankSum=0.646;QD=12.61;ReadPosRankSum=0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    0/1:11,12:23:99:320,0,389
17    16960911    rs7223686    A    G    789.93    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.284;DB;DP=78;Dels=0.0;FS=3.835;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.782;QD=10.13;ReadPosRankSum=0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    0/1:42,36:78:99:820,0,1292
17    16960978    rs6502557    G    A    1520.55    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.89;DB;DP=129;Dels=0.0;FS=0.666;HRun=0;HaplotypeScore=1.7172;MQ=59.46;MQ0=0;MQRankSum=-0.474;QD=11.79;ReadPosRankSum=-0.674;SNPEFF_AMINO_ACID_CHANGE=R51H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_16960950_16961264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395806    GT:AD:DP:GQ:PL    0/1:72,57:129:99:1551,0,1912
17    17030331    rs74521076    C    T    114.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
17    17035036    rs2271520    A    G    1091.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    1/1:0,32:32:84.24:1124,84,0
17    17039561    rs3833098    CCAG    C    524.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=156.1622;IndelType=D;MQ=58.61;MQ0=0;QD=14.58;SNPEFF_AMINO_ACID_CHANGE=TS178T;SNPEFF_CODON_CHANGE=accagc/acc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_17_17039533_17039764;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    1/1:22,14:36:42.14:567,42,0
17    17045733    rs3744139    G    T    123.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466186    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
17    17045861    rs3744138    C    T    537.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.022;DB;DP=30;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=0.9665;MQ=58.45;MQ0=0;MQRankSum=-2.854;QD=17.92;ReadPosRankSum=1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466186    GT:AD:DP:GQ:PL    0/1:12,18:30:99:568,0,305
17    17046024    rs3744137    C    A    1125.06    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=75;Dels=0.0;FS=8.879;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.462;QD=15.0;ReadPosRankSum=0.09;SNPEFF_AMINO_ACID_CHANGE=P327Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_17045941_17046079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    0/1:35,40:75:99:1155,0,1101
17    17046145    rs77888743    C    T    149.66    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=14.97;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466186    GT:AD:DP:GQ:PL    0/1:3,7:10:80.95:180,0,81
17    17046736    rs6502563    T    G    110.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
17    17049547    rs117407639    G    A    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:69,0,30
17    17050573    rs3744134    G    A    2319.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.55;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2353,178,0
17    17062241    rs11551189    C    G    290.80    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.542;DB;DP=51;Dels=0.0;FS=4.371;HRun=0;HaplotypeScore=1.8938;MQ=59.55;MQ0=0;MQRankSum=0.23;QD=5.7;ReadPosRankSum=-1.323;SNPEFF_AMINO_ACID_CHANGE=A619;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_17061746_17062316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444976    GT:AD:DP:GQ:PL    0/1:35,16:51:99:321,0,1024
17    17069105    rs3744131    G    A    1183.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1216,93,0
17    17071412    rs112865497    C    T    81.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPRIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341712    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
17    17079636    rs55784627    C    T    657.56    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.025;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.186;QD=21.21;ReadPosRankSum=0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf84;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255403    GT:AD:DP:GQ:PL    0/1:11,20:31:99:688,0,367
17    17118442    rs34235236    T    C    1567    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=36.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466317    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1600,123,0
17    17120204    rs7208065    T    C    43.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389169    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:74,0,24
17    17120344    rs41424546    C    T    64.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=5.34;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389169    GT:AD:DP:GQ:PL    0/1:8,4:12:94.12:94,0,297
17    17122286    rs8065572    C    T    551.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389169    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:584,45,0
17    17122327    rs8065832    G    A    439.67    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.231;DB;DP=36;Dels=0.0;FS=2.37;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.832;QD=12.21;ReadPosRankSum=-0.832;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389169    GT:AD:DP:GQ:PL    0/1:21,15:36:99:470,0,510
17    17124625    rs41400246    C    T    63.47    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=12.69;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389168    GT:AD:DP:GQ:PL    0/1:1,4:5:30.62:93,0,31
17    17127471    rs1736219    G    A    181.28    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=20.14;ReadPosRankSum=1.179;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389168    GT:AD:DP:GQ:PL    0/1:2,7:9:56.57:211,0,57
17    17168164    rs3182911    G    A    854.74    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.28;DB;DP=56;Dels=0.0;FS=1.028;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.348;QD=15.26;ReadPosRankSum=0.348;SNPEFF_AMINO_ACID_CHANGE=I171;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_17168116_17168295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539941    GT:AD:DP:GQ:PL    0/1:25,31:56:99:885,0,822
17    17179209    rs9892352    A    T    193.40    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.405;QD=12.89;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268717    GT:AD:DP:GQ:PL    0/1:8,7:15:99:223,0,252
17    17179299    rs4985760    C    G    411.65    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=12.47;ReadPosRankSum=1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268717    GT:AD:DP:GQ:PL    0/1:20,13:33:99:442,0,719
17    17179481    rs4985761    G    A    878.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=55;Dels=0.0;FS=2.359;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.273;QD=15.97;ReadPosRankSum=-0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268717    GT:AD:DP:GQ:PL    0/1:22,33:55:99:908,0,707
17    17184399    rs2012954    A    C    40.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=5.77;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268717    GT:AD:DP:GQ:PL    0/1:3,4:7:70.36:70,0,106
17    17398278    rs11545787    G    A    79.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.84;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268711    GT:AD:DP:GQ:PL    0/1:2,3:5:53.64:109,0,54
17    17399127    rs139149360    G    A    107.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=17.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268711    GT:AD:DP:GQ:PL    0/1:2,4:6:52.81:138,0,53
17    17412032    rs4646407    G    C    62.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.93;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421096    GT:AD:DP:GQ:PL    0/1:6,3:9:92.34:92,0,135
17    17696531    rs3803763    G    C    262.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.088;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.59;ReadPosRankSum=-1.413;SNPEFF_AMINO_ACID_CHANGE=G90A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_17696263_17701056;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261641    GT:AD:DP:GQ:PL    0/1:9,9:18:99:293,0,299
17    17696755    rs11649804    C    A    552.20    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=38;Dels=0.0;FS=1.325;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.598;QD=14.53;ReadPosRankSum=1.334;SNPEFF_AMINO_ACID_CHANGE=P165T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_17696263_17701056;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261641    GT:AD:DP:GQ:PL    0/1:17,21:38:99:582,0,499
17    17697098    rs35068024    AGC    A    229.77    PASS    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=4.523;DB;DP=41;FS=5.356;HRun=0;HaplotypeScore=222.3637;IndelType=D;MQ=60.23;MQ0=0;MQRankSum=0.246;QD=5.6;ReadPosRankSum=0.554;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_17696263_17701056;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000261641    GT:AD:DP:GQ:PL    0/1:32,9:41:99:269,0,1073
17    17697101    rs34083643    AG    A    137.78    PASS    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=4.517;DB;DP=42;FS=5.654;HRun=1;HaplotypeScore=206.3137;IndelType=D;MQ=60.23;MQ0=0;MQRankSum=0.132;QD=3.28;ReadPosRankSum=0.633;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_17696263_17701056;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000261641    GT:AD:DP:GQ:PL    0/1:33,9:42:99:177,0,992
17    17875836    rs9914127    A    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    17880877    rs7219320    A    G    736.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,23:23:60.19:770,60,0
17    17896090    rs4368210    C    T    1317.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.68;SNPEFF_AMINO_ACID_CHANGE=L152;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_17896079_17896225;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1351,105,0
17    17896205    rs4584886    C    T    2538.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.68;MQ0=0;QD=34.77;SNPEFF_AMINO_ACID_CHANGE=R191W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_17896079_17896225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2572,190,0
17    17897739    rs4924832    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    17898243    rs9899355    C    T    1584.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1618,120,0
17    17900990    rs8071238    T    C    479.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:513,39,0
17    17909775    rs7219324    A    G    89.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    17911014    rs12150369    G    A    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313838    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    17919749    rs9913277    G    T    412.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.273;QD=27.49;ReadPosRankSum=0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATPAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302530    GT:AD:DP:GQ:PL    1/1:1,14:15:3.85:443,4,0
17    17924868    rs9896837    A    G    230.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATPAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444058    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:263,21,0
17    17931884    rs72006230    C    CAAA    965.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=58;FS=0.0;HRun=17;HaplotypeScore=444.9628;IndelType=I;MQ=51.77;MQ0=0;MQRankSum=0.165;QD=16.65;ReadPosRankSum=-0.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATPAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444058    GT:AD:DP:GQ:PL    1/1:17,20:58:84.82:1008,85,0
17    17932008    rs80251201    A    G    885.84    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.849;MQ=53.44;MQ0=0;MQRankSum=0.542;QD=14.06;ReadPosRankSum=2.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATPAF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444058    GT:AD:DP:GQ:PL    0/1:31,32:63:99:916,0,882
17    17960011    rs16960835    C    T    83.75    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=16.75;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268719    GT:AD:DP:GQ:PL    0/1:1,4:5:18.55:114,0,19
17    17962351    rs17804843    A    T    106.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=15.24;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376345    GT:AD:DP:GQ:PL    0/1:2,5:7:58.31:137,0,58
17    18003648    rs854814    G    A    1383.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.299;MQ=59.44;MQ0=0;QD=33.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496428    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1417,105,0
17    18003671    rs2272570    T    G    1441.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496428    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1474,111,0
17    18005073    rs721669    A    G    184.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=26.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496428    GT:AD:DP:GQ:PL    1/1:0,6:7:18.05:217,18,0
17    18023897    rs2955365    G    A    96.67    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.278;QD=8.79;ReadPosRankSum=0.678;SNPEFF_AMINO_ACID_CHANGE=A595T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18021896_18025723;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,247
17    18025744    rs712268    C    G    290.12    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=18.13;ReadPosRankSum=-2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:4,12:16:99:320,0,116
17    18028318    rs854790    C    G    144.54    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=16.06;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,139
17    18029857    rs854791    C    T    157.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=19.7;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:2,6:8:62.22:188,0,62
17    18030240    rs854792    T    C    517.34    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.059;DB;DP=49;Dels=0.0;FS=3.388;HRun=1;HaplotypeScore=0.8941;MQ=59.05;MQ0=0;MQRankSum=0.424;QD=10.56;ReadPosRankSum=-0.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:26,23:49:99:547,0,914
17    18030524    rs854793    G    A    128.54    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=2.0;QD=9.18;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:9,5:14:99:159,0,300
17    18039263    rs854785    A    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
17    18041507    rs2280777    C    T    606.97    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.801;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.038;QD=13.49;ReadPosRankSum=-0.088;SNPEFF_AMINO_ACID_CHANGE=L1652;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18041429_18041560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:23,22:45:99:637,0,589
17    18042276    rs2075658    A    C    186.80    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=20.76;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:2,7:9:55.88:217,0,56
17    18042976    rs854782    C    A    75.34    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=6.85;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:6,5:11:99:105,0,211
17    18043766    rs854780    C    G    1128.86    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.213;DB;DP=106;Dels=0.0;FS=16.253;HRun=0;HaplotypeScore=0.6651;MQ=59.56;MQ0=0;MQRankSum=-0.01;QD=10.65;ReadPosRankSum=-0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:67,39:106:99:1159,0,1863
17    18043817    rs2072652    C    T    1788.51    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.737;DB;DP=149;Dels=0.0;FS=16.719;HRun=0;HaplotypeScore=3.4963;MQ=59.85;MQ0=0;MQRankSum=-1.033;QD=12.0;ReadPosRankSum=1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:83,64:149:99:1819,0,2130
17    18045098    rs2072653    G    A    613.79    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=55;Dels=0.0;FS=2.672;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.194;QD=11.16;ReadPosRankSum=1.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:33,22:55:99:644,0,944
17    18046058    rs854778    A    C    210.13    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=15;Dels=0.0;FS=2.027;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.892;QD=14.01;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412324    GT:AD:DP:GQ:PL    0/1:6,9:15:99:240,0,187
17    18046898    rs854777    T    C    41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.25;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=C1977R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18046880_18046933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:71,0,30
17    18047772    rs112595736    T    TC    857.12    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.48;DB;DP=52;FS=0.0;HRun=2;HaplotypeScore=126.9235;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.245;QD=16.48;ReadPosRankSum=0.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412324    GT:AD:DP:GQ:PL    0/1:27,25:52:99:896,0,709
17    18052466    rs4303606    A    G    1340.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1373,111,0
17    18052867    rs2955379    T    C    1666.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.61;MQ0=0;QD=28.25;SNPEFF_AMINO_ACID_CHANGE=F2395;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18052800_18052894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1700,135,0
17    18054692    rs2056841    G    A    657.95    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=45;Dels=0.0;FS=4.566;HRun=0;HaplotypeScore=0.8667;MQ=59.49;MQ0=0;MQRankSum=1.277;QD=14.62;ReadPosRankSum=-2.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:19,26:45:99:688,0,540
17    18054868    rs854773    G    T    420.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.226;QD=17.52;ReadPosRankSum=-0.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:9,15:24:99:450,0,227
17    18057272    rs712271    A    G    504.91    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.022;DB;DP=30;Dels=0.0;FS=11.95;HRun=1;HaplotypeScore=1.4538;MQ=59.23;MQ0=0;MQRankSum=-0.11;QD=16.83;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:13,17:30:99:535,0,425
17    18059454    rs2242595    G    A    479.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=28;Dels=0.0;FS=11.237;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.903;QD=17.11;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:12,16:28:99:509,0,338
17    18069628    rs72827432    G    T    223.57    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.353;DB;DP=19;Dels=0.0;FS=2.199;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=11.77;ReadPosRankSum=-0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473013    GT:AD:DP:GQ:PL    0/1:8,11:19:99:254,0,244
17    18070761    rs854796    G    A    293.05    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=13;Dels=0.0;FS=5.119;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=22.54;ReadPosRankSum=0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473013    GT:AD:DP:GQ:PL    0/1:4,9:13:76.08:323,0,76
17    18077175    rs854800    T    C    237.52    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.366;DB;DP=34;Dels=0.0;FS=3.542;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.356;QD=6.99;ReadPosRankSum=-0.842;SNPEFF_AMINO_ACID_CHANGE=Y3477;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18077095_18077235;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000205890    GT:AD:DP:GQ:PL    0/1:22,12:34:99:268,0,643
17    18098018    rs4925145    A    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALKBH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261650    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    18111344    rs9913262    A    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALKBH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261650    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:72,0,29
17    18111354    rs9913266    A    G    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ALKBH5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261650    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:118,9,0
17    18133495    rs2290502    G    A    171.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316843    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
17    18135753    rs2290503    T    C    262.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316843    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:295,24,0
17    18136988    rs2290504    T    C    541.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316843    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:575,42,0
17    18137141    rs2290505    A    G    1795.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9865;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=S148G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18137092_18137250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316843    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1829,144,0
17    18139793    rs7215678    A    C    363.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316843    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:396,30,0
17    18139896    rs2746028    G    T    973.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316843    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1006,75,0
17    18141705    rs2245430    C    T    252.80    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.511;DB;DP=20;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=1.266;QD=12.64;ReadPosRankSum=-1.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316843    GT:AD:DP:GQ:PL    0/1:9,10:20:99:283,0,246
17    18149854    rs2856289    A    G    810.64    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.331;DB;DP=46;Dels=0.0;FS=4.754;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.423;QD=17.62;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLII;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459958    GT:AD:DP:GQ:PL    0/1:20,26:46:99:841,0,605
17    18156541    rs2071241    A    G    124.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.35;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLII;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473425    GT:AD:DP:GQ:PL    0/1:6,5:11:99:155,0,215
17    18164239    rs2605141    T    C    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323019    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
17    18167505    rs2605143    T    C    213.09    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=17.76;ReadPosRankSum=-0.831;SNPEFF_AMINO_ACID_CHANGE=A264;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18167024_18169095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323019    GT:AD:DP:GQ:PL    0/1:5,7:12:99:243,0,163
17    18178012    rs3215557    C    CG    221.40    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=21.9424;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=1.422;QD=24.6;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540524    GT:AD:DP:GQ:PL    0/1:3,6:9:98.86:260,0,99
17    18181546    rs149596894    G    A    248.92    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.716;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.23;MQ0=0;MQRankSum=-0.302;QD=8.58;ReadPosRankSum=0.116;SNPEFF_AMINO_ACID_CHANGE=P287L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18180989_18181671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540524    GT:AD:DP:GQ:PL    0/1:17,12:29:99:279,0,508
17    18184011    rs6502644    G    T    247.93    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=17;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=14.58;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321105    GT:AD:DP:GQ:PL    0/1:7,10:17:99:278,0,244
17    18193941    rs2230154    G    A    65.13    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.479;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.185;QD=5.43;ReadPosRankSum=0.925;SNPEFF_AMINO_ACID_CHANGE=D39;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18193871_18194000;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540524    GT:AD:DP:GQ:PL    0/1:9,3:12:95.13:95,0,250
17    18194362    rs6502645    C    T    773.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321105    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:806,60,0
17    18197888    rs3764405    C    T    204.38    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9864;MQ=60.0;MQ0=0;MQRankSum=-0.984;QD=13.63;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321105    GT:AD:DP:GQ:PL    0/1:8,7:15:99:234,0,291
17    18202678    rs4632181    G    A    309.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.666;QD=17.17;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461127    GT:AD:DP:GQ:PL    0/1:8,10:18:99:339,0,245
17    18205750    rs66697088    TGGAGAGTGAA    T    911.34    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.256;DB;DP=29;FS=6.701;HRun=0;HaplotypeScore=269.6165;IndelType=D;MQ=52.3;MQ0=0;MQRankSum=-2.202;QD=31.43;ReadPosRankSum=0.837;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461127    GT:AD:DP:GQ:PL    0/1:16,13:29:99:950,0,1264
17    18208334    rs7225932    C    A    152.58    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=21.8;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472959    GT:AD:DP:GQ:PL    0/1:2,5:7:23.17:183,0,23
17    18208544    rs7207123    G    A    205.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.489;QD=11.39;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TOP3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472959    GT:AD:DP:GQ:PL    0/1:10,8:18:99:235,0,316
17    18220674    rs8080966    C    T    1635.15    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.682;DB;DP=117;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=3.3969;MQ=59.61;MQ0=0;MQRankSum=-0.588;QD=13.98;ReadPosRankSum=-1.278;SNPEFF_AMINO_ACID_CHANGE=P524L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18218716_18221463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406438    GT:AD:DP:GQ:PL    0/1:59,58:117:99:1665,0,1821
17    18220770    rs1563632    G    A    2181.40    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.159;DB;DP=151;Dels=0.0;FS=3.876;HRun=0;HaplotypeScore=2.4691;MQ=59.69;MQ0=0;MQRankSum=-0.019;QD=14.45;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=R556H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18218716_18221463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCR8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406438    GT:AD:DP:GQ:PL    0/1:74,76:151:99:2211,0,2119
17    18221134    rs1563631    C    T    908.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=60;Dels=0.0;FS=3.698;HRun=0;HaplotypeScore=1.7987;MQ=58.91;MQ0=0;MQRankSum=2.155;QD=15.15;ReadPosRankSum=-0.521;SNPEFF_AMINO_ACID_CHANGE=Y677;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18218716_18221463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCR8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406438    GT:AD:DP:GQ:PL    0/1:30,30:60:99:939,0,820
17    18226177    rs4925171    G    T    577.93    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.046;DB;DP=38;Dels=0.0;FS=3.053;HRun=1;HaplotypeScore=1.5767;MQ=59.39;MQ0=0;MQRankSum=-0.32;QD=15.21;ReadPosRankSum=-1.448;SNPEFF_AMINO_ACID_CHANGE=L869;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18225931_18226517;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCR8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406438    GT:AD:DP:GQ:PL    0/1:17,21:38:99:608,0,532
17    18231998    rs1979276    G    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316694    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
17    18232017    rs3783    G    C    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316694    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
17    18232096    rs1979277    G    A    154.49    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.75;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=L249F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18231187_18232233;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395684    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:184,0,25
17    18233810    rs12937300    T    C    433.04    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.07;DB;DP=22;Dels=0.0;FS=4.612;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.202;QD=19.68;ReadPosRankSum=1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316694    GT:AD:DP:GQ:PL    0/1:9,13:22:99:463,0,248
17    18239012    rs2273028    G    A    1388.19    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.878;DB;DP=73;Dels=0.0;FS=6.024;HRun=1;HaplotypeScore=0.9867;MQ=59.43;MQ0=0;MQRankSum=0.308;QD=19.02;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316694    GT:AD:DP:GQ:PL    0/1:30,43:73:99:1418,0,1017
17    18291456    rs578670    C    G    43.22    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-2.054;QD=4.8;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399134    GT:AD:DP:GQ:PL    0/1:6,3:9:73.22:73,0,225
17    18291470    rs586214    C    G    40.21    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-2.166;QD=4.02;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399134    GT:AD:DP:GQ:PL    0/1:7,3:10:70.21:70,0,262
17    18291544    rs586322    A    G    162.76    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.99;MQ0=0;MQRankSum=-1.339;QD=7.4;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=P296;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18291533_18291602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPLL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399134    GT:AD:DP:GQ:PL    0/1:15,7:22:99:193,0,483
17    18291618    rs586757    C    T    223.67    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.606;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.65;MQ0=1;MQRankSum=-0.553;QD=8.28;ReadPosRankSum=0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPLL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399134    GT:AD:DP:GQ:PL    0/1:17,10:27:99:254,0,476
17    18304397    rs80298607    C    T    58.64    MQFilter40    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=14.05;MQ0=12;MQRankSum=0.717;QD=2.17;ReadPosRankSum=0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AL353997.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338790    GT:AD:DP:GQ:PL    0/1:19,8:27:59.02:89,0,59
17    18315107    rs113907775    C    CCT    312.64    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.026;DB;DP=33;FS=11.614;HRun=0;HaplotypeScore=104.0426;IndelType=I;MQ=26.44;MQ0=4;MQRankSum=1.195;QD=8.45;ReadPosRankSum=0.268;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353997.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000407600    GT:AD:DP:GQ:PL    0/1:28,9:33:99:352,0,811
17    18334097    .    G    A    60.24    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.315;DP=31;Dels=0.0;FS=5.842;HRun=1;HaplotypeScore=1.5362;MQ=29.85;MQ0=10;MQRankSum=0.425;QD=1.94;ReadPosRankSum=0.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353997.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326333    GT:AD:DP:GQ:PL    0/1:25,5:31:90.23:90,0,404
17    18334279    .    C    T    271.33    MQFilter40    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=3.676;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=22.34;MQ0=24;MQRankSum=-0.37;QD=5.22;ReadPosRankSum=2.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353997.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326333    GT:AD:DP:GQ:PL    0/1:33,19:52:99:301,0,428
17    18334288    .    A    G    207.61    MQFilter40    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=1.193;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=23.03;MQ0=19;MQRankSum=-0.358;QD=4.72;ReadPosRankSum=1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353997.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326333    GT:AD:DP:GQ:PL    0/1:29,14:44:99:238,0,421
17    18334293    .    G    A    207.74    MQFilter40    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.068;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.15;MQ0=16;MQRankSum=-0.601;QD=5.47;ReadPosRankSum=1.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353997.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326333    GT:AD:DP:GQ:PL    0/1:25,13:38:99:238,0,360
17    18334353    .    G    A    100.93    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=24.01;MQ0=11;MQRankSum=-1.2;QD=3.88;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353997.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326333    GT:AD:DP:GQ:PL    0/1:14,12:26:99:131,0,288
17    18344514    .    T    A    63.40    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DP=18;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=24.74;MQ0=6;MQRankSum=-1.977;QD=3.52;ReadPosRankSum=-1.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399124    GT:AD:DP:GQ:PL    0/1:12,6:18:93.40:93,0,161
17    18380065    rs1682221    C    G    215.16    MQFilter40    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=13;Dels=0.0;FS=10.414;HRun=0;HaplotypeScore=3.3906;MQ=33.95;MQ0=1;MQRankSum=-1.835;QD=16.55;ReadPosRankSum=1.468;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:4,9:13:99:245,0,117
17    18380135    rs4924879    C    G    190.87    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.64;MQ0=1;MQRankSum=-0.847;QD=10.6;ReadPosRankSum=2.54;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_18380130_18380207;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:9,9:18:99:221,0,258
17    18380144    .    T    C    203.18    MQFilter40    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.433;DP=19;Dels=0.0;FS=1.822;HRun=0;HaplotypeScore=1.9891;MQ=38.19;MQ0=1;MQRankSum=-0.529;QD=10.69;ReadPosRankSum=2.742;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_18380130_18380207;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:9,10:19:99:233,0,261
17    18380154    rs1682220    A    G    335.04    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.783;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9191;MQ=41.84;MQ0=1;MQRankSum=-1.231;QD=15.23;ReadPosRankSum=2.052;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_18380130_18380207;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:7,15:22:99:365,0,174
17    18380185    rs79350397    G    C    225.35    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=18;Dels=0.0;FS=2.115;HRun=2;HaplotypeScore=0.5784;MQ=44.94;MQ0=1;MQRankSum=-1.78;QD=12.52;ReadPosRankSum=-0.433;SNPEFF_AMINO_ACID_CHANGE=C6S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18380130_18380207;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:8,10:18:99:255,0,202
17    18380260    rs77759205    C    A    43.26    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9717;MQ=49.48;MQ0=0;MQRankSum=-1.708;QD=3.6;ReadPosRankSum=2.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:9,3:12:73.25:73,0,191
17    18380298    .    T    C    72.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=44.98;MQ0=0;MQRankSum=-1.754;QD=10.42;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:3,4:7:96.96:103,0,97
17    18392175    .    T    C    156.76    MQFilter40    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.667;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.66;MQ0=2;MQRankSum=-0.133;QD=9.8;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:5,11:16:95.16:187,0,95
17    18393867    rs142058102    C    T    130.62    MQFilter40    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.5;MQ0=6;MQRankSum=-0.278;QD=7.68;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:8,9:17:77.62:161,0,78
17    18394010    .    G    A    58.70    MQFilter40;QDFilter2    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.1;MQ0=89;MQRankSum=0.922;QD=0.61;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:37,60:97:35.35:89,0,35
17    18394431    rs140402450    T    C    223.10    MQFilter40    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=33.69;MQ0=2;MQRankSum=0.761;QD=14.87;ReadPosRankSum=0.592;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:4,11:15:39.82:253,0,40
17    18394552    .    G    A    1368.37    MQFilter40    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=0.214;DP=113;Dels=0.0;FS=4.298;HRun=1;HaplotypeScore=2.1766;MQ=29.14;MQ0=15;MQRankSum=0.548;QD=12.11;ReadPosRankSum=-1.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:39,74:113:99:1398,0,571
17    18394706    .    A    G    570.24    MQFilter40    AB=0.293;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DP=92;Dels=0.0;FS=4.528;HRun=1;HaplotypeScore=0.8321;MQ=20.99;MQ0=21;MQRankSum=-0.911;QD=6.2;ReadPosRankSum=0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:27,65:92:99:600,0,247
17    18395647    .    G    T    62.75    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.49;MQ0=6;MQRankSum=-1.307;QD=4.18;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:5,10:15:92.74:93,0,156
17    18396007    rs1725650    C    G    108.91    MQFilter40    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=49;Dels=0.0;FS=22.583;HRun=0;HaplotypeScore=0.0;MQ=34.47;MQ0=8;MQRankSum=-1.134;QD=2.22;ReadPosRankSum=-2.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:32,17:49:99:139,0,845
17    18396131    rs138238232    T    C    101.43    MQFilter40    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.208;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.52;MQ0=19;MQRankSum=2.701;QD=2.36;ReadPosRankSum=-0.853;SNPEFF_AMINO_ACID_CHANGE=S206;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18396011_18396173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412421    GT:AD:DP:GQ:PL    0/1:26,17:43:99:131,0,348
17    18397711    rs75054442    G    A    1007.43    MQFilter40    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.438;DB;DP=76;Dels=0.0;FS=3.703;HRun=0;HaplotypeScore=0.0;MQ=26.3;MQ0=3;MQRankSum=0.925;QD=13.26;ReadPosRankSum=-0.9;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328114    GT:AD:DP:GQ:PL    0/1:26,50:76:99:1037,0,404
17    18417838    rs518349    C    A    754.09    MQFilter40    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=2.984;DB;DP=69;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=30.25;MQ0=9;MQRankSum=-2.549;QD=10.93;ReadPosRankSum=-0.915;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC107983.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420856    GT:AD:DP:GQ:PL    0/1:25,44:69:99:784,0,788
17    18417847    rs652735    T    C    917.20    MQFilter40    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=0.514;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6642;MQ=29.82;MQ0=9;MQRankSum=-3.667;QD=11.32;ReadPosRankSum=-1.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC107983.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420856    GT:AD:DP:GQ:PL    0/1:28,53:81:99:947,0,881
17    18498497    rs71844421    G    GA    828.04    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.293;DB;DP=69;FS=2.485;HRun=11;HaplotypeScore=176.2943;IndelType=I;MQ=53.15;MQ0=0;MQRankSum=0.83;QD=11.83;ReadPosRankSum=-0.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC107983.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285176    GT:AD:DP:GQ:PL    0/1:35,34:69:99:867,0,343
17    18528472    rs144491541    C    A    1664.98    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.947;DB;DP=174;Dels=0.0;FS=5.564;HRun=0;HaplotypeScore=2.5793;MQ=37.11;MQ0=24;MQRankSum=0.162;QD=9.57;ReadPosRankSum=-0.894;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC107983.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285176    GT:AD:DP:GQ:PL    0/1:93,80:174:99:1695,0,1811
17    18528623    rs34925025    A    G    802.39    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.541;DB;DP=82;Dels=0.0;FS=2.035;HRun=1;HaplotypeScore=0.0;MQ=44.84;MQ0=5;MQRankSum=-4.153;QD=9.79;ReadPosRankSum=0.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC107983.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285176    GT:AD:DP:GQ:PL    0/1:43,39:82:99:832,0,1289
17    18541775    rs9902086    A    G    178.25    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.955;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.32;MQ0=0;MQRankSum=-0.562;QD=6.15;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345096    GT:AD:DP:GQ:PL    0/1:18,11:29:99:208,0,581
17    18541852    .    ACC    A    90.69    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=3.266;DP=19;FS=4.771;HRun=3;HaplotypeScore=170.3769;IndelType=D;MQ=48.75;MQ0=0;MQRankSum=-3.367;QD=4.77;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345096    GT:AD:DP:GQ:PL    0/1:13,6:19:99:130,0,587
17    18541856    .    A    ATGGT    314.58    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DP=18;FS=2.218;HRun=0;HaplotypeScore=166.6427;IndelType=I;MQ=48.05;MQ0=0;MQRankSum=-3.419;QD=17.48;ReadPosRankSum=-0.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345096    GT:AD:DP:GQ:PL    0/1:12,6:18:99:354,0,697
17    18541868    rs55807264    A    G    172.12    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=26;Dels=0.0;FS=7.203;HRun=0;HaplotypeScore=0.0;MQ=46.86;MQ0=0;MQRankSum=-3.163;QD=6.62;ReadPosRankSum=-3.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345096    GT:AD:DP:GQ:PL    0/1:12,14:26:99:202,0,415
17    18542074    rs9908833    G    A    353.70    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.931;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=52.37;MQ0=0;MQRankSum=0.462;QD=14.15;ReadPosRankSum=-1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345096    GT:AD:DP:GQ:PL    0/1:13,12:25:99:384,0,456
17    18542432    .    T    C    90.59    MQFilter40    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.62;MQ0=16;MQRankSum=-4.514;QD=2.06;ReadPosRankSum=-2.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345096    GT:AD:DP:GQ:PL    0/1:15,29:44:99:121,0,522
17    18542519    rs74452761    T    G    191.89    MQFilter40;QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=31.7;MQ0=11;MQRankSum=-0.577;QD=1.37;ReadPosRankSum=1.048;SNPEFF_AMINO_ACID_CHANGE=E56A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18542488_18542527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345096    GT:AD:DP:GQ:PL    0/1:114,26:140:99:222,0,2425
17    18565143    rs55636053    T    C    31.46    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.81;MQ0=1;MQRankSum=-1.62;QD=2.25;ReadPosRankSum=-0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC026271.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285274    GT:AD:DP:GQ:PL    0/1:9,5:14:61.45:61,0,323
17    18610134    rs1973459    T    G    1273.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.421;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.29;MQ0=0;MQRankSum=1.639;QD=33.52;ReadPosRankSum=1.358;SNPEFF_AMINO_ACID_CHANGE=S14;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18610008_18610175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC026271.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417757    GT:AD:DP:GQ:PL    1/1:1,37:38:99:1307,102,0
17    18638151    rs9916065    A    G    82.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.99;MQ0=0;MQRankSum=0.851;QD=8.21;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM16L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395671    GT:AD:DP:GQ:PL    0/1:5,5:10:99:112,0,156
17    18647539    rs116483657    G    A    2699.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=34.15;MQ0=27;QD=22.31;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395665    GT:AD:DP:GQ:PL    1/1:0,120:121:99:2732,214,0
17    18647625    rs74502778    T    A    4710.11    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.57;MQ=34.12;MQ0=10;QD=28.9;SNPEFF_AMINO_ACID_CHANGE=I23N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18647388_18648062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301938    GT:AD:DP:GQ:PL    1/1:0,163:163:99:4710,436,0
17    18653070    rs9895749    G    A    917.47    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=5.897;DB;DP=85;Dels=0.0;FS=0.992;HRun=3;HaplotypeScore=0.0;MQ=44.4;MQ0=0;MQRankSum=-0.209;QD=10.79;ReadPosRankSum=-0.508;SNPEFF_AMINO_ACID_CHANGE=E236K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18653035_18653235;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301938    GT:AD:DP:GQ:PL    0/1:50,35:85:99:947,0,1208
17    18671733    rs10775382    C    A    449.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=32.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301938    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:482,36,0
17    18681913    rs77288131    G    A    1034    MQFilter40    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.835;DB;DP=105;Dels=0.0;FS=4.125;HRun=0;HaplotypeScore=0.9665;MQ=31.95;MQ0=12;MQRankSum=0.5;QD=9.85;ReadPosRankSum=-1.625;SNPEFF_AMINO_ACID_CHANGE=A768T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18681788_18682662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301938    GT:AD:DP:GQ:PL    0/1:57,48:105:99:1064,0,1058
17    18694277    rs61075345    G    A    2613.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.43;MQ0=16;QD=21.97;SNPEFF_AMINO_ACID_CHANGE=G55E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18694209_18694353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307767    GT:AD:DP:GQ:PL    1/1:0,118:118:99:2647,240,0
17    18702220    rs8080471    T    C    913.95    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.206;DB;DP=77;Dels=0.0;FS=1.984;HRun=1;HaplotypeScore=0.9332;MQ=52.24;MQ0=0;MQRankSum=-1.85;QD=11.87;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=A142;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18702125_18702256;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307767    GT:AD:DP:GQ:PL    0/1:40,37:77:99:944,0,1220
17    18707275    .    A    G    62.06    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.16;MQ0=1;MQRankSum=1.231;QD=10.34;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307767    GT:AD:DP:GQ:PL    0/1:3,3:6:51.82:92,0,52
17    18708788    rs17675577    A    G    232.11    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.171;DB;DP=26;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=46.47;MQ0=0;MQRankSum=0.116;QD=8.93;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307767    GT:AD:DP:GQ:PL    0/1:14,12:26:99:262,0,459
17    18708830    rs55974180    GT    G    276.42    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.211;DB;DP=36;FS=1.773;HRun=12;HaplotypeScore=193.3284;IndelType=D;MQ=47.87;MQ0=0;MQRankSum=0.235;QD=7.47;ReadPosRankSum=-0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307767    GT:AD:DP:GQ:PL    0/1:6,19:36:99:315,0,178
17    18708981    rs56889377    C    T    174.90    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=27.91;MQ0=5;MQRankSum=0.318;QD=8.33;ReadPosRankSum=2.117;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476139    GT:AD:DP:GQ:PL    0/1:12,9:21:99:205,0,224
17    18709002    rs59912867    CTT    C    123    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=66.5925;IndelType=D;MQ=32.27;MQ0=3;MQRankSum=0.38;QD=7.24;ReadPosRankSum=-2.141;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM18B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476139    GT:AD:DP:GQ:PL    0/1:10,7:13:99:162,0,370
17    18769349    rs2386404    T    C    115    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=14.38;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268835    GT:AD:DP:GQ:PL    0/1:3,5:8:99:145,0,103
17    18770733    rs2305064    G    A    140.43    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=12.77;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431320    GT:AD:DP:GQ:PL    0/1:4,7:11:99:170,0,134
17    18775900    rs4393623    A    G    1980.28    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.719;DB;DP=178;Dels=0.0;FS=3.936;HRun=0;HaplotypeScore=1.8455;MQ=59.3;MQ0=0;MQRankSum=0.416;QD=11.13;ReadPosRankSum=-0.707;SNPEFF_AMINO_ACID_CHANGE=T59;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18775896_18775962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268835    GT:AD:DP:GQ:PL    0/1:98,80:178:99:2010,0,3092
17    18776020    rs7503678    A    T    1748.92    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.869;DB;DP=149;Dels=0.0;FS=9.747;HRun=0;HaplotypeScore=2.8668;MQ=60.0;MQ0=0;MQRankSum=-1.518;QD=11.74;ReadPosRankSum=0.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268835    GT:AD:DP:GQ:PL    0/1:82,67:149:99:1779,0,2644
17    18785902    .    T    C    3172.82    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DP=249;DS;Dels=0.0;FS=1.073;HRun=0;HaplotypeScore=1.811;MQ=59.35;MQ0=0;MQRankSum=1.931;QD=12.74;ReadPosRankSum=0.564;SNPEFF_AMINO_ACID_CHANGE=M105T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18785881_18785996;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419071    GT:AD:DP:GQ:PL    0/1:131,118:249:99:3203,0,4154
17    18793061    rs3803835    C    T    425.78    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.463;QD=17.03;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268835    GT:AD:DP:GQ:PL    0/1:12,13:25:99:456,0,389
17    18793225    rs3826380    A    G    839.19    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=2.528;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.335;QD=22.08;ReadPosRankSum=1.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414602    GT:AD:DP:GQ:PL    0/1:12,26:38:99:869,0,317
17    18814661    rs55971101    T    TTA    1237.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=83.8802;IndelType=I;MQ=59.51;MQ0=0;QD=49.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422237    GT:AD:DP:GQ:PL    1/1:0,23:25:72.24:1280,72,0
17    18827391    rs62076164    C    T    294.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.53;QD=19.63;ReadPosRankSum=1.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412418    GT:AD:DP:GQ:PL    0/1:6,9:15:99:324,0,160
17    18827460    rs146275587    C    T    102.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=0.0;QD=14.63;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412418    GT:AD:DP:GQ:PL    0/1:3,4:7:88.84:132,0,89
17    18833810    rs1634411    C    T    745.08    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.273;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.933;QD=14.61;ReadPosRankSum=-0.725;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460724    GT:AD:DP:GQ:PL    0/1:26,25:51:99:775,0,812
17    18855611    rs2076562    T    C    63.80    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=4.91;ReadPosRankSum=-0.437;SNPEFF_AMINO_ACID_CHANGE=N31;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_18855501_18855629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395643    GT:AD:DP:GQ:PL    0/1:8,5:13:93.79:94,0,263
17    18856871    rs2472693    A    G    162.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317977    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
17    18882991    rs2472714    T    A    3385.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345041    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3386,256,0
17    18916893    rs11652575    T    C    107.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.48;MQ0=0;QD=17.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317977    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:140,12,0
17    18918258    rs28526726    C    G    378.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317977    GT:AD:DP:GQ:PL    1/1:0,14:14:33.07:412,33,0
17    18923818    rs1624825    G    A    353.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284154    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:387,30,0
17    18965567    rs114692504    T    C    510.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=37.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:543,42,0
17    18967152    rs116902881    C    T    3935.91    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.395;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7374;MQ=36.88;MQ0=6;MQRankSum=-2.512;QD=15.74;ReadPosRankSum=1.995;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    0/1:115,134:250:99:3936,0,3734
17    18967183    .    C    G    578.15    MQFilter40    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.319;DP=244;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2566;MQ=35.3;MQ0=16;MQRankSum=2.317;QD=2.37;ReadPosRankSum=0.366;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    0/1:207,36:244:99:608,0,5975
17    18967259    .    TCACTCC    T    457.35    QDFilter2    AB=0.936;AC=1;AF=0.50;AN=2;BaseQRankSum=6.023;DP=169;DS;FS=0.0;HRun=0;HaplotypeScore=1049.5445;IndelType=D;MQ=25.25;MQ0=71;MQRankSum=-1.466;QD=1.83;ReadPosRankSum=0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    0/1:233,17:169:99:496,0,15917
17    18967317    .    G    A    160.95    MQFilter40;QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.075;DP=173;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=24.88;MQ0=48;MQRankSum=-0.484;QD=0.93;ReadPosRankSum=1.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    0/1:142,31:173:99:191,0,3050
17    18967372    .    G    T    1102.90    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.12;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.66;MQ0=19;MQRankSum=-0.93;QD=17.79;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    1/1:21,41:62:20.03:1136,20,0
17    18967384    .    C    T    90.01    MQFilter40;QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=2.248;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=24.24;MQ0=15;MQRankSum=-0.474;QD=1.76;ReadPosRankSum=1.629;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    0/1:44,7:51:99:120,0,806
17    18967428    .    T    C    58.87    MQFilter40;QDFilter2    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.807;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=18.71;MQ0=18;MQRankSum=-0.326;QD=1.78;ReadPosRankSum=0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    0/1:24,9:33:88.86:89,0,268
17    18967452    .    T    C    195.61    MQFilter40    AC=2;AF=1.00;AN=2;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.72;MQ0=18;QD=7.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3B-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000363359    GT:AD:DP:GQ:PL    1/1:0,26:26:21.05:229,21,0
17    19091394    .    G    A    30.58    MQFilter40;QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=3.485;DP=242;Dels=0.0;FS=2.73;HRun=1;HaplotypeScore=5.1754;MQ=16.5;MQ0=50;MQRankSum=1.729;QD=0.13;ReadPosRankSum=0.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snoRNA;SNPEFF_GENE_NAME=SNORD3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362428    GT:AD:DP:GQ:PL    0/1:211,31:242:60.57:61,0,2729
17    19213335    rs2296981    C    G    759.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314728    GT:AD:DP:GQ:PL    1/1:0,22:23:60.18:793,60,0
17    19216174    rs6421434    T    G    152.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314728    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
17    19231898    rs7206963    T    C    461.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314728    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:495,39,0
17    19232078    rs6587220    T    C    1807.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.17;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=V116A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_19232024_19232200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395618    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1840,138,0
17    19233096    rs2296979    T    C    208.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314728    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
17    19247075    rs4924987    G    A    596.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=B9D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268841    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:630,48,0
17    19263424    rs7213401    T    G    173.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=B9D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468679    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:206,18,0
17    19288274    rs2240099    T    G    232.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299612    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:265,21,0
17    19314611    rs739830    T    C    389.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=32.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RNF112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461366    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:422,33,0
17    19314917    rs35694276    CT    C    47.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=18;HaplotypeScore=128.9278;IndelType=D;MQ=51.96;MQ0=0;QD=2.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RNF112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461366    GT:AD:DP:GQ:PL    1/1:8,6:19:20.93:90,21,0
17    19318031    rs1295330    A    G    938.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8836;MQ=58.27;MQ0=0;QD=34.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RNF112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453070    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:972,75,0
17    19319015    rs1295329    C    T    997.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RNF112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453070    GT:AD:DP:GQ:PL    1/1:0,32:32:75.24:1031,75,0
17    19349606    rs145279274    A    G    162.36    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.82;MQ0=4;QD=14.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC004448.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421796    GT:AD:DP:GQ:PL    1/1:0,11:11:18.04:195,18,0
17    19437187    rs2252281    T    C    30.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC47A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395585    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
17    19445923    rs12451696    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC47A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270570    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    19458777    rs2440149    G    C    388.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC47A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270570    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:422,33,0
17    19463343    rs2289669    G    A    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC47A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    19464023    rs3794805    C    G    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC47A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    19584543    rs1812051    A    C    34.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000176643    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:65,0,33
17    19646750    rs59102760    C    T    887.17    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.67;DB;DP=67;Dels=0.0;FS=0.978;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.083;QD=13.24;ReadPosRankSum=0.978;SNPEFF_AMINO_ACID_CHANGE=E121;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_19646545_19646776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH3A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379258    GT:AD:DP:GQ:PL    0/1:33,34:67:99:917,0,900
17    19687307    rs205090    G    A    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    19689559    rs205088    C    T    91.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
17    19699358    rs192511    T    C    1408.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5562;MQ=59.49;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1441,111,0
17    19699605    rs67889598    CAT    C    581.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=104.4885;IndelType=D;MQ=59.95;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    1/1:12,17:29:51.16:624,51,0
17    19705312    .    C    T    635.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.076;DP=38;Dels=0.0;FS=3.259;HRun=0;HaplotypeScore=0.9999;MQ=59.39;MQ0=0;MQRankSum=-1.656;QD=16.74;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    0/1:19,19:38:99:666,0,554
17    19713740    rs150122    C    T    6091.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.7994;MQ=59.12;MQ0=0;QD=33.84;SNPEFF_AMINO_ACID_CHANGE=V370M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_19713691_19713751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    1/1:0,180:180:99:6091,448,0
17    19729495    rs157397    T    C    2344.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=29.68;SNPEFF_AMINO_ACID_CHANGE=A264;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_19729452_19729499;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2377,184,0
17    19741877    rs34670978    G    A    435.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.382;QD=9.69;ReadPosRankSum=-0.058;SNPEFF_AMINO_ACID_CHANGE=P242S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_19741814_19741896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    0/1:27,18:45:99:466,0,888
17    19768917    .    T    A    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.94;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ULK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361658    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:110,0,67
17    19999781    rs12942179    G    A    279.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261503    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
17    20000131    rs4925085    G    T    2411.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261503    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2445,181,0
17    20013459    rs4925086    A    T    147    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261503    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:180,15,0
17    20135171    rs56020655    A    G    815.15    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=4.307;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.6;MQ0=0;MQRankSum=0.232;QD=14.3;ReadPosRankSum=0.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261503    GT:AD:DP:GQ:PL    0/1:30,27:57:99:845,0,893
17    20200129    rs144910117    CTCTG    C    248.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=42.5985;IndelType=D;MQ=49.49;MQ0=0;MQRankSum=-1.203;QD=27.57;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261503    GT:AD:DP:GQ:PL    0/1:3,6:9:99:287,0,210
17    20225037    .    G    A    76.63    QDFilter2    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.983;DP=92;Dels=0.0;FS=2.326;HRun=0;HaplotypeScore=0.6651;MQ=48.05;MQ0=3;MQRankSum=-4.84;QD=0.83;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395530    GT:AD:DP:GQ:PL    0/1:76,16:92:99:107,0,2594
17    20225135    rs112185038    CA    C    134.96    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.71;DB;DP=15;FS=0.0;HRun=4;HaplotypeScore=37.7234;IndelType=D;MQ=28.78;MQ0=0;MQRankSum=-0.065;QD=7.5;ReadPosRankSum=0.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395530    GT:AD:DP:GQ:PL    0/1:10,8:15:99:174,0,294
17    20244264    rs7223488    G    C    85.01    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.7;MQ0=0;MQRankSum=0.736;QD=14.17;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC144C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340196    GT:AD:DP:GQ:PL    0/1:1,5:6:25.63:115,0,26
17    20245520    rs55694354    T    C    39.76    MQFilter40    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.0;MQ0=9;MQRankSum=-1.652;QD=2.21;ReadPosRankSum=-1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC144C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340196    GT:AD:DP:GQ:PL    0/1:11,7:18:69.75:70,0,128
17    20268754    rs149074404    A    G    577.89    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.31;MQ0=5;QD=21.4;SNPEFF_AMINO_ACID_CHANGE=H738R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20268399_20269343;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC144C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425519    GT:AD:DP:GQ:PL    1/1:0,27:27:57.11:611,57,0
17    20295301    rs141410944    T    C    37.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.69;MQ0=1;QD=12.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC144C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425519    GT:AD:DP:GQ:PL    1/1:1,2:3:6.01:68,6,0
17    20297545    rs3874846    T    G    408.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.23;MQ0=20;QD=8.52;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC144C;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000425519    GT:AD:DP:GQ:PL    1/1:0,48:48:45.05:442,45,0
17    20319337    rs28513804    T    A    125.41    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379228    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
17    20320618    rs147942977    A    T    140.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.14;MQ0=3;QD=17.54;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM106B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379228    GT:AD:DP:GQ:PL    1/1:2,6:8:15.04:173,15,0
17    20330077    rs146668025    C    T    96.56    QDFilter2    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.273;DB;DP=54;Dels=0.0;FS=5.16;HRun=0;HaplotypeScore=0.0;MQ=40.41;MQ0=5;MQRankSum=-5.824;QD=1.79;ReadPosRankSum=-0.491;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413270    GT:AD:DP:GQ:PL    0/1:28,25:54:99:127,0,965
17    20332138    rs62066933    G    A    2653.75    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.055;DB;DP=125;Dels=0.0;FS=7.724;HRun=0;HaplotypeScore=1.9512;MQ=31.34;MQ0=31;MQRankSum=-2.207;QD=21.23;ReadPosRankSum=0.163;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413270    GT:AD:DP:GQ:PL    1/1:3,122:125:99:2687,157,0
17    20332305    .    T    C    116.12    MQFilter40    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DP=26;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=0.9933;MQ=19.71;MQ0=16;MQRankSum=-0.48;QD=4.47;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413270    GT:AD:DP:GQ:PL    0/1:2,24:26:48.37:146,0,48
17    20334398    rs2694201    G    A    2189.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8656;MQ=44.4;MQ0=1;QD=34.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413270    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2223,172,0
17    20353593    .    T    C    78.17    MQFilter40    AC=2;AF=1.00;AN=2;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.26;MQ0=4;QD=9.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324290    GT:AD:DP:GQ:PL    1/1:1,7:8:12.01:111,12,0
17    20354747    .    C    CCT    505.97    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=30.9446;IndelType=I;MQ=26.26;MQ0=6;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324290    GT:AD:DP:GQ:PL    1/1:3,13:9:27.09:548,27,0
17    20354836    rs150485558    A    G    296.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.61;MQ0=21;QD=6.05;SNPEFF_AMINO_ACID_CHANGE=S293;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20354794_20354956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423676    GT:AD:DP:GQ:PL    1/1:6,43:49:36.02:330,36,0
17    20370735    rs4985833    T    C    34.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=19.91;MQ0=4;QD=5.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324290    GT:AD:DP:GQ:PL    1/1:1,5:6:6.01:65,6,0
17    20397111    rs4417597    G    T    486.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.575;MQ=19.15;MQ0=18;QD=11.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455284    GT:AD:DP:GQ:PL    1/1:0,41:42:48.10:520,48,0
17    20397415    rs4419106    G    A    46.36    MQFilter40;QDFilter2    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.34;MQ0=13;MQRankSum=0.956;QD=1.78;ReadPosRankSum=-0.322;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KRT16P5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455284    GT:AD:DP:GQ:PL    0/1:16,9:26:46.08:76,0,46
17    20417077    .    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.09;MQ0=7;QD=2.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC025627.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453795    GT:AD:DP:GQ:PL    1/1:0,13:13:6.02:67,6,0
17    20420412    .    G    A    274.76    MQFilter40;QDFilter2    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=2.11;DP=194;Dels=0.0;FS=1.19;HRun=0;HaplotypeScore=8.5691;MQ=22.49;MQ0=24;MQRankSum=0.491;QD=1.42;ReadPosRankSum=0.875;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451704    GT:AD:DP:GQ:PL    0/1:146,47:194:99:305,0,1921
17    20420448    .    C    A    499.29    MQFilter40    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DP=186;Dels=0.0;FS=2.0;HRun=0;HaplotypeScore=3.9941;MQ=28.01;MQ0=4;MQRankSum=0.951;QD=2.68;ReadPosRankSum=-0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451704    GT:AD:DP:GQ:PL    0/1:143,43:186:99:529,0,2879
17    20420499    rs16963676    G    A    335.23    MQFilter40    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=165;Dels=0.0;FS=3.295;HRun=0;HaplotypeScore=0.8667;MQ=24.55;MQ0=17;MQRankSum=-0.68;QD=2.03;ReadPosRankSum=-0.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451704    GT:AD:DP:GQ:PL    0/1:127,38:165:99:365,0,2164
17    20420551    rs144026372    A    G    954.73    MQFilter40    AB=0.186;AC=1;AF=0.50;AN=2;BaseQRankSum=2.532;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.444;MQ=22.68;MQ0=22;MQRankSum=0.501;QD=9.27;ReadPosRankSum=4.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451704    GT:AD:DP:GQ:PL    0/1:19,83:103:15.20:985,0,15
17    20420652    .    G    T    106.05    MQFilter40    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DP=23;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=27.03;MQ0=6;MQRankSum=-0.752;QD=4.61;ReadPosRankSum=1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451704    GT:AD:DP:GQ:PL    0/1:15,8:23:99:136,0,192
17    20424936    rs62068043    A    G    208.25    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.322;DB;DP=29;Dels=0.0;FS=3.736;HRun=0;HaplotypeScore=0.8667;MQ=44.04;MQ0=1;MQRankSum=-3.892;QD=7.18;ReadPosRankSum=0.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC015818.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451704    GT:AD:DP:GQ:PL    0/1:15,13:29:99:238,0,536
17    20492807    .    C    G    221.50    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.611;DP=56;Dels=0.0;FS=6.473;HRun=0;HaplotypeScore=0.734;MQ=41.06;MQ0=2;MQRankSum=-0.83;QD=3.96;ReadPosRankSum=-2.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIS3P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340731    GT:AD:DP:GQ:PL    0/1:39,17:56:99:251,0,1085
17    20492893    rs116125666    C    T    371.35    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=54;Dels=0.0;FS=6.856;HRun=0;HaplotypeScore=0.8321;MQ=45.25;MQ0=4;MQRankSum=-2.158;QD=6.88;ReadPosRankSum=1.594;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIS3P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340731    GT:AD:DP:GQ:PL    0/1:37,17:54:99:401,0,966
17    20492954    .    C    T    98.54    QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=0.629;DP=54;Dels=0.0;FS=12.171;HRun=2;HaplotypeScore=0.0;MQ=42.97;MQ0=2;MQRankSum=-1.79;QD=1.82;ReadPosRankSum=-1.427;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIS3P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340731    GT:AD:DP:GQ:PL    0/1:43,11:54:99:129,0,1283
17    20493013    .    C    A    86.69    QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DP=48;Dels=0.0;FS=11.165;HRun=1;HaplotypeScore=0.0;MQ=48.24;MQ0=4;MQRankSum=-3.931;QD=1.81;ReadPosRankSum=-1.826;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MEIS3P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340731    GT:AD:DP:GQ:PL    0/1:37,11:48:99:117,0,1152
17    20624050    rs7501970    G    C    346.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC126365.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441215    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:380,30,0
17    20768601    rs62066973    C    T    61.82    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=45.61;MQ0=1;MQRankSum=-0.731;QD=10.3;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:1,5:6:30.97:92,0,31
17    20768608    rs4347684    G    A    70.63    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=47.75;MQ0=1;MQRankSum=0.956;QD=7.85;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:6,3:9:99:101,0,152
17    20768691    rs75640454    C    T    74.95    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.377;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.12;MQ0=2;MQRankSum=-0.833;QD=3.57;ReadPosRankSum=0.745;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:13,8:21:99:105,0,487
17    20768692    rs4629022    A    G    116.09    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.412;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.12;MQ0=2;MQRankSum=-0.482;QD=5.53;ReadPosRankSum=0.658;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:13,8:21:99:146,0,467
17    20768730    rs4605228    A    G    79.02    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=28;Dels=0.0;FS=2.53;HRun=0;HaplotypeScore=0.5784;MQ=48.35;MQ0=4;MQRankSum=-3.239;QD=2.82;ReadPosRankSum=-1.969;SNPEFF_AMINO_ACID_CHANGE=*222Q;SNPEFF_CODON_CHANGE=Taa/Caa;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_17_20766708_20768822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:17,11:28:99:109,0,534
17    20768744    rs62066974    G    T    83.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.611;DB;DP=30;Dels=0.0;FS=2.161;HRun=0;HaplotypeScore=1.5767;MQ=50.57;MQ0=2;MQRankSum=-3.584;QD=2.8;ReadPosRankSum=-0.611;SNPEFF_AMINO_ACID_CHANGE=S217Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20766708_20768822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:20,10:30:99:114,0,602
17    20768803    rs76135364    C    T    56.17    QDFilter2    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=0.769;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=50.85;MQ0=1;MQRankSum=-4.299;QD=1.81;ReadPosRankSum=-2.489;SNPEFF_AMINO_ACID_CHANGE=E197;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20766708_20768822;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:22,9:31:86.17:86,0,737
17    20768816    rs73298040    C    T    80.87    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.837;DB;DP=33;Dels=0.0;FS=8.501;HRun=0;HaplotypeScore=0.9973;MQ=50.79;MQ0=1;MQRankSum=-4.418;QD=2.45;ReadPosRankSum=-2.705;SNPEFF_AMINO_ACID_CHANGE=C193Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20766708_20768822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:21,12:33:99:111,0,664
17    20768839    .    GA    G    84.12    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=3.666;DP=26;FS=2.632;HRun=9;HaplotypeScore=179.1171;IndelType=D;MQ=51.18;MQ0=1;MQRankSum=-2.115;QD=2.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:19,12:26:99:123,0,453
17    20768867    rs9906896    A    C    293.47    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=26;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.0;MQ=48.22;MQ0=1;MQRankSum=-1.97;QD=11.29;ReadPosRankSum=1.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:11,15:26:99:323,0,336
17    20769768    rs9900791    A    G    82.30    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.23;MQ0=2;MQRankSum=-1.589;QD=8.23;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:2,8:10:61.51:112,0,62
17    20769802    rs75406219    G    A    89.76    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=12;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=43.35;MQ0=2;MQRankSum=-2.383;QD=7.48;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:5,7:12:99:120,0,122
17    20769832    rs76332742    C    T    83.56    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.07;MQ0=1;MQRankSum=-2.843;QD=6.43;ReadPosRankSum=1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:6,7:13:99:114,0,150
17    20769845    rs76435951    C    T    71.91    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.07;MQ0=1;MQRankSum=-2.843;QD=5.53;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539177    GT:AD:DP:GQ:PL    0/1:6,7:13:99:102,0,147
17    20769862    rs79433424    T    A    37.25    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=-2.219;QD=4.14;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=G190;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20769861_20770016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:5,4:9:67.24:67,0,130
17    20769866    rs79678106    G    A    39.57    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=-2.219;QD=4.4;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=P189L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20769861_20770016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:5,4:9:69.56:70,0,145
17    20769896    rs79843086    G    T    41.49    SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-2.017;QD=5.19;ReadPosRankSum=0.421;SNPEFF_AMINO_ACID_CHANGE=T179N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20769861_20770016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:4,4:8:71.48:71,0,146
17    20769899    rs79930314    G    T    41.49    SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-2.017;QD=5.19;ReadPosRankSum=0.421;SNPEFF_AMINO_ACID_CHANGE=S178*;SNPEFF_CODON_CHANGE=tCg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_20769861_20770016;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:4,4:8:71.48:71,0,148
17    20769904    rs74863563    G    A    40.90    SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-2.017;QD=5.11;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=H176;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20769861_20770016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:4,4:8:70.89:71,0,143
17    20798950    .    T    C    115.64    QDFilter2    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=1.063;DP=72;Dels=0.0;FS=1.52;HRun=3;HaplotypeScore=0.8941;MQ=44.95;MQ0=7;MQRankSum=-4.524;QD=1.61;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:55,17:72:99:146,0,1680
17    20798977    rs9906906    A    G    292.23    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.46;DB;DP=103;Dels=0.0;FS=1.085;HRun=0;HaplotypeScore=0.7887;MQ=40.88;MQ0=12;MQRankSum=-5.365;QD=2.84;ReadPosRankSum=-2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:70,33:103:99:322,0,1822
17    20799119    rs2279263    A    G    656.14    MQFilter40    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.875;DB;DP=89;Dels=0.0;FS=1.018;HRun=2;HaplotypeScore=0.9832;MQ=34.72;MQ0=17;MQRankSum=-3.677;QD=7.37;ReadPosRankSum=-0.65;SNPEFF_AMINO_ACID_CHANGE=L72P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20798990_20799453;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:41,48:89:99:686,0,1167
17    20799194    rs9907420    A    G    1076.10    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.975;DB;DP=91;Dels=0.0;FS=1.784;HRun=0;HaplotypeScore=0.9979;MQ=47.94;MQ0=4;MQRankSum=-2.659;QD=11.83;ReadPosRankSum=0.093;SNPEFF_AMINO_ACID_CHANGE=L47S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20798990_20799453;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCDC144NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327925    GT:AD:DP:GQ:PL    0/1:40,50:91:99:1106,0,1116
17    20906251    rs4985956    C    T    612.13    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.401;DB;DP=56;Dels=0.0;FS=3.138;HRun=0;HaplotypeScore=0.9987;MQ=59.98;MQ0=0;MQRankSum=-0.153;QD=10.93;ReadPosRankSum=0.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463692    GT:AD:DP:GQ:PL    0/1:31,25:56:99:642,0,923
17    20906257    rs4985957    A    G    2289.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9721;MQ=59.98;MQ0=0;QD=33.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463692    GT:AD:DP:GQ:PL    1/1:0,68:69:99:2323,187,0
17    20906272    rs3214918    G    GT    1898.88    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.958;DB;DP=110;FS=0.935;HRun=0;HaplotypeScore=603.5365;IndelType=I;MQ=60.6;MQ0=0;MQRankSum=0.106;QD=17.26;ReadPosRankSum=0.596;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463692    GT:AD:DP:GQ:PL    0/1:54,56:110:99:1938,0,1597
17    20908081    rs66644145    CTAGTGGAGCTGCGGGCAGCCAA    C    808.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=218.0708;IndelType=D;MQ=38.29;MQ0=0;QD=67.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478443    GT:AD:DP:GQ:PL    1/1:6,6:12:18.06:851,18,0
17    20908325    rs9797279    T    C    2064.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.96;MQ0=0;QD=33.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478443    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2098,160,0
17    20911204    rs11541311    G    T    777.40    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.633;DB;DP=63;Dels=0.0;FS=3.511;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.038;QD=12.34;ReadPosRankSum=-0.887;SNPEFF_AMINO_ACID_CHANGE=I391;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20911183_20911309;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537526    GT:AD:DP:GQ:PL    0/1:32,31:63:99:807,0,1040
17    20916022    rs17770614    A    C    34.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.75;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    0/1:3,3:6:64.51:65,0,107
17    20916035    rs4985962    A    G    222.56    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.741;QD=22.26;ReadPosRankSum=1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    0/1:1,9:10:7.28:252,0,7
17    20916362    rs719093    G    A    150.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=12.53;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476111    GT:AD:DP:GQ:PL    0/1:6,6:12:99:180,0,217
17    20921492    rs1038107    C    T    898.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.4;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:0,26:26:72.23:932,72,0
17    20921538    rs3047630    C    CAAG    502.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=89.9687;IndelType=I;MQ=49.96;MQ0=0;QD=50.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:3,7:10:24.08:544,24,0
17    20921548    rs1038108    C    A    233.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.65;MQ0=0;QD=29.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:266,21,0
17    20924236    rs7207724    A    G    66.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
17    20924270    rs899341    T    G    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
17    20924523    rs2291037    G    A    597.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_AMINO_ACID_CHANGE=Y107;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_20924426_20924539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:631,45,0
17    20924620    rs899342    T    C    49.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    20931660    rs4985820    G    T    513.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:546,39,0
17    20945887    rs4985967    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261497    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
17    21081820    rs2279163    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    21087963    rs3744225    T    G    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    21087988    rs3744224    A    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346603    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    21146911    rs897927    C    T    55.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C17orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399011    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
17    21147031    rs4324188    G    A    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C17orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399011    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
17    21147404    rs897926    A    G    709.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.27;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C17orf103;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399011    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:743,60,0
17    21201550    rs8072228    T    C    740.48    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=2.947;DB;DP=45;Dels=0.0;FS=3.076;HRun=0;HaplotypeScore=1.8255;MQ=55.76;MQ0=0;MQRankSum=-0.746;QD=16.46;ReadPosRankSum=-1.504;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:19,25:45:99:770,0,600
17    21201579    rs11651154    C    T    833.89    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.23;DB;DP=60;Dels=0.0;FS=1.719;HRun=0;HaplotypeScore=0.734;MQ=57.25;MQ0=0;MQRankSum=0.319;QD=13.9;ReadPosRankSum=0.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:28,32:60:99:864,0,930
17    21201719    rs8076154    T    C    2536.39    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.219;DB;DP=215;Dels=0.0;FS=1.707;HRun=0;HaplotypeScore=5.1738;MQ=58.48;MQ0=0;MQRankSum=-0.466;QD=11.8;ReadPosRankSum=-0.101;SNPEFF_AMINO_ACID_CHANGE=I19T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21201697_21201791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:122,92:215:99:2566,0,3679
17    21201851    rs8072386    A    G    1153.26    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=103;Dels=0.0;FS=6.79;HRun=0;HaplotypeScore=2.6247;MQ=55.79;MQ0=0;MQRankSum=-2.538;QD=11.2;ReadPosRankSum=-0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:58,45:103:99:1183,0,1727
17    21201884    rs2305875    T    C    419.56    SnpCluster    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.954;DB;DP=66;Dels=0.0;FS=2.413;HRun=3;HaplotypeScore=1.6828;MQ=54.06;MQ0=0;MQRankSum=-3.04;QD=6.36;ReadPosRankSum=-0.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:38,28:66:99:450,0,1154
17    21201890    rs8072401    A    G    412.33    SnpCluster    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=4.09;DB;DP=60;Dels=0.0;FS=2.904;HRun=0;HaplotypeScore=0.8941;MQ=53.0;MQ0=0;MQRankSum=-4.024;QD=6.87;ReadPosRankSum=0.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:36,24:60:99:442,0,1027
17    21201894    rs8071865    C    T    370.91    SnpCluster    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=5.971;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=53.0;MQ0=0;MQRankSum=-3.482;QD=7.0;ReadPosRankSum=0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:31,22:53:99:401,0,854
17    21201907    rs2305874    G    A    360.63    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.636;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.92;MQ0=0;MQRankSum=-3.389;QD=7.36;ReadPosRankSum=-0.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:27,22:49:99:391,0,940
17    21201934    rs4986015    T    C    260.45    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.178;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.226;QD=8.4;ReadPosRankSum=0.062;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:16,15:31:99:290,0,562
17    21201981    rs8072533    A    G    181.51    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.5;ReadPosRankSum=0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:5,6:11:99:211,0,152
17    21202015    rs34956489    G    A    74.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.38;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:3,3:6:97.96:104,0,98
17    21202102    rs35701021    C    T    147.30    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.32;MQ0=0;MQRankSum=-1.794;QD=9.21;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:9,7:16:99:177,0,265
17    21202191    rs33911218    C    A    382.52    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=56.13;MQ0=0;MQRankSum=-0.693;QD=8.9;ReadPosRankSum=-0.562;SNPEFF_AMINO_ACID_CHANGE=P11T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21202190_21202238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:24,19:43:99:413,0,623
17    21202237    rs36047035    G    C    362.99    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=0.3;DB;DP=44;Dels=0.0;FS=1.287;HRun=0;HaplotypeScore=0.0;MQ=55.1;MQ0=0;MQRankSum=-0.443;QD=8.25;ReadPosRankSum=0.271;SNPEFF_AMINO_ACID_CHANGE=R26T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21202190_21202238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:27,17:44:99:393,0,679
17    21202272    rs34880480    C    G    237.64    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=30;Dels=0.0;FS=1.735;HRun=0;HaplotypeScore=0.0;MQ=53.52;MQ0=0;MQRankSum=-2.674;QD=7.92;ReadPosRankSum=-0.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:19,11:30:99:268,0,549
17    21202310    rs77343934    G    A    60.49    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9899;MQ=52.65;MQ0=0;MQRankSum=-2.06;QD=3.02;ReadPosRankSum=-0.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:13,7:20:90.48:90,0,474
17    21202311    rs75476957    C    T    64.16    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9899;MQ=52.24;MQ0=0;MQRankSum=-2.662;QD=3.38;ReadPosRankSum=-1.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:12,7:19:94.15:94,0,428
17    21202435    rs35935588    A    T    34.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=5.82;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:3,3:6:64.91:65,0,103
17    21203820    rs78304829    G    C    78.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=1.638;QD=9.75;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:4,4:8:93.05:108,0,93
17    21203825    rs75854955    C    G    106.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.729;QD=11.79;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:4,5:9:68.95:136,0,69
17    21203893    rs34105301    T    C    260.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.639;QD=14.46;ReadPosRankSum=-1.639;SNPEFF_AMINO_ACID_CHANGE=S39P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21203857_21203970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:6,12:18:99:290,0,185
17    21203934    rs62057672    G    A    239.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.354;QD=16.0;ReadPosRankSum=0.495;SNPEFF_AMINO_ACID_CHANGE=V52;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21203857_21203970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:5,10:15:86.87:270,0,87
17    21203949    rs62057673    C    T    225.62    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.751;QD=20.51;ReadPosRankSum=-0.751;SNPEFF_AMINO_ACID_CHANGE=S57;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21203857_21203970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:3,8:11:12.05:255,0,12
17    21203998    rs62057674    G    A    99.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=12.43;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,112
17    21204067    rs73982730    G    A    119.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.86;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:2,4:6:27.18:149,0,27
17    21204074    rs73982732    G    A    109.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.3;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:2,4:6:59.74:140,0,60
17    21204153    rs66883103    C    T    355.92    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=25;Dels=0.0;FS=4.925;HRun=0;HaplotypeScore=0.9999;MQ=55.21;MQ0=0;MQRankSum=-2.856;QD=14.24;ReadPosRankSum=-0.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:12,13:25:99:386,0,421
17    21204187    rs56067280    G    T    433.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.203;DB;DP=36;Dels=0.0;FS=4.263;HRun=0;HaplotypeScore=0.0;MQ=54.79;MQ0=0;MQRankSum=-0.834;QD=12.05;ReadPosRankSum=1.412;SNPEFF_AMINO_ACID_CHANGE=R65L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21204186_21204305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:21,15:36:99:464,0,527
17    21204192    rs56216806    C    T    425.61    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.615;DB;DP=38;Dels=0.0;FS=4.167;HRun=0;HaplotypeScore=0.0;MQ=53.74;MQ0=0;MQRankSum=-3.435;QD=11.2;ReadPosRankSum=0.147;SNPEFF_AMINO_ACID_CHANGE=R100W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21204186_21204305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:21,17:38:99:456,0,666
17    21204210    rs55796947    C    T    531.24    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.324;DB;DP=44;Dels=0.0;FS=1.571;HRun=0;HaplotypeScore=0.8321;MQ=54.63;MQ0=0;MQRankSum=-2.053;QD=12.07;ReadPosRankSum=-0.668;SNPEFF_AMINO_ACID_CHANGE=Q102*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_21204186_21204305;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000342679    GT:AD:DP:GQ:PL    0/1:22,21:44:99:561,0,686
17    21204257    rs56166328    G    A    659.01    HaplotypeScoreFilter13    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=3.343;DB;DP=78;Dels=0.0;FS=2.287;HRun=0;HaplotypeScore=14.9689;MQ=54.11;MQ0=0;MQRankSum=-4.591;QD=8.45;ReadPosRankSum=0.857;SNPEFF_AMINO_ACID_CHANGE=T117;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21204186_21204305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342679    GT:AD:DP:GQ:PL    0/1:50,28:78:99:689,0,1299
17    21204266    rs2230435    T    C    1412.98    HaplotypeScoreFilter13    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.969;DB;DP=87;Dels=0.0;FS=8.551;HRun=0;HaplotypeScore=15.902;MQ=54.98;MQ0=0;MQRankSum=-2.181;QD=16.24;ReadPosRankSum=0.835;SNPEFF_AMINO_ACID_CHANGE=C120;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21204186_21204305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342679    GT:AD:DP:GQ:PL    0/1:36,51:87:99:1443,0,964
17    21204308    rs55777930    G    T    864.98    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=1.071;DB;DP=118;Dels=0.0;FS=0.748;HRun=1;HaplotypeScore=3.6648;MQ=54.91;MQ0=0;MQRankSum=-4.068;QD=7.33;ReadPosRankSum=-1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:74,44:118:99:895,0,2168
17    21204428    rs36191822    G    T    387.75    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.818;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=54.85;MQ0=0;MQRankSum=-1.076;QD=9.23;ReadPosRankSum=0.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:25,17:42:99:418,0,872
17    21204437    rs76549047    T    C    297.23    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.612;MQ=55.37;MQ0=0;MQRankSum=-1.967;QD=9.59;ReadPosRankSum=1.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:19,12:31:99:327,0,643
17    21204441    rs78162711    T    C    276.29    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.126;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.612;MQ=55.8;MQ0=0;MQRankSum=-3.153;QD=8.13;ReadPosRankSum=1.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475625    GT:AD:DP:GQ:PL    0/1:22,12:34:99:306,0,804
17    21204537    rs62057675    C    T    37.22    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=51.77;MQ0=0;MQRankSum=-2.262;QD=3.1;ReadPosRankSum=1.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:9,3:12:67.22:67,0,243
17    21204562    rs3785540    A    G    55.26    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.32;MQ0=0;MQRankSum=-1.231;QD=11.05;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:2,3:5:60.62:85,0,61
17    21205122    rs56165605    G    A    37.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
17    21205200    rs7217209    T    C    92.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
17    21205225    rs72831576    A    G    131.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
17    21205236    rs72831577    A    G    124.49    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=20.75;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:1,5:6:24.96:154,0,25
17    21205275    rs67586338    T    C    73.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.64;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:2,3:5:58.62:103,0,59
17    21205292    rs72831580    C    T    95.66    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=13.67;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,103
17    21205406    rs72831582    A    G    63.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=54.56;MQ0=0;MQRankSum=-0.421;QD=7.96;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:4,4:8:93.68:94,0,109
17    21205460    rs62057721    C    T    268.67    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=0.818;QD=15.8;ReadPosRankSum=0.914;SNPEFF_AMINO_ACID_CHANGE=D106;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21205455_21205571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:8,9:17:99:299,0,253
17    21205606    rs2305871    G    C    190.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.625;DB;DP=14;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=0.9983;MQ=56.95;MQ0=0;MQRankSum=0.865;QD=13.62;ReadPosRankSum=-0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:6,8:14:99:221,0,163
17    21205748    rs66482218    G    A    36.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
17    21206360    rs67280439    A    G    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.14;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:67,0,70
17    21206372    rs72838545    G    C    44.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=8.9;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:2,3:5:60.19:74,0,60
17    21206385    rs72838547    C    T    34.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=5.83;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:3,3:6:64.97:65,0,110
17    21206444    rs62057728    A    G    158.49    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=17;Dels=0.0;FS=4.708;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=9.32;ReadPosRankSum=-1.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:10,7:17:99:188,0,348
17    21206556    rs736103    C    T    287.55    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.163;QD=17.97;ReadPosRankSum=1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:6,10:16:99:318,0,129
17    21206616    rs57761454    G    A    62.22    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.246;QD=5.66;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:7,4:11:92.21:92,0,241
17    21207582    rs61142877    T    C    198.87    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=28.41;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:1,6:7:21.16:229,0,21
17    21207602    rs55677712    C    G    256.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.479;QD=21.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:3,9:12:90.36:287,0,90
17    21207649    rs56342308    C    T    302.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=15;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=20.15;ReadPosRankSum=-0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:5,10:15:99:332,0,161
17    21207844    rs2230436    C    T    368.88    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.799;DB;DP=37;Dels=0.0;FS=7.563;HRun=0;HaplotypeScore=5.5742;MQ=57.18;MQ0=0;MQRankSum=0.016;QD=9.97;ReadPosRankSum=-0.016;SNPEFF_AMINO_ACID_CHANGE=A196;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21207738_21207865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:23,14:37:99:399,0,609
17    21207916    rs7209761    A    G    574.79    PASS    AB=0.185;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.658;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=57.73;MQ0=0;MQRankSum=-0.039;QD=21.29;ReadPosRankSum=-0.968;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:5,22:27:97.89:605,0,98
17    21207945    rs9896440    A    G    291.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.928;DB;DP=20;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=2.6632;MQ=58.84;MQ0=0;MQRankSum=0.567;QD=14.6;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:10,10:20:99:322,0,273
17    21207982    rs76436552    G    A    48.01    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9992;MQ=55.21;MQ0=0;MQRankSum=-1.58;QD=4.8;ReadPosRankSum=-2.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:7,3:10:78:78,0,258
17    21207989    rs9893916    G    A    97.65    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9963;MQ=57.39;MQ0=0;MQRankSum=-1.159;QD=10.85;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:5,4:9:99:128,0,179
17    21208187    rs7209543    C    T    135.61    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.69;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:9,5:14:99:166,0,324
17    21208221    rs7208462    G    A    39.81    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=30;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.946;QD=1.33;ReadPosRankSum=1.113;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:25,5:30:69.80:70,0,893
17    21208292    rs7214432    T    C    821.32    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.972;DB;DP=69;Dels=0.0;FS=3.976;HRun=0;HaplotypeScore=2.3113;MQ=59.33;MQ0=0;MQRankSum=1.056;QD=11.9;ReadPosRankSum=-1.261;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:38,31:69:99:851,0,1275
17    21208317    rs4456559    G    A    1437.92    PASS    AB=0.352;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.433;DB;DP=88;Dels=0.0;FS=2.03;HRun=0;HaplotypeScore=0.6651;MQ=59.48;MQ0=0;MQRankSum=-2.254;QD=16.34;ReadPosRankSum=-1.293;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:31,57:88:99:1468,0,846
17    21208331    rs1898407    G    A    33.20    QDFilter2    AB=0.904;AC=1;AF=0.50;AN=2;BaseQRankSum=2.695;DB;DP=104;Dels=0.0;FS=3.073;HRun=0;HaplotypeScore=1.5717;MQ=59.56;MQ0=0;MQRankSum=0.186;QD=0.32;ReadPosRankSum=-0.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:94,10:104:63.19:63,0,2739
17    21208347    rs4559960    C    A    532.45    HaplotypeScoreFilter13    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=1.844;DB;DP=128;Dels=0.0;FS=3.154;HRun=1;HaplotypeScore=25.7085;MQ=59.64;MQ0=0;MQRankSum=0.157;QD=4.16;ReadPosRankSum=1.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:104,24:128:99:562,0,3055
17    21208349    rs7209860    C    G    1378.21    HaplotypeScoreFilter13    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.266;DB;DP=129;Dels=0.0;FS=6.983;HRun=0;HaplotypeScore=26.6026;MQ=59.64;MQ0=0;MQRankSum=0.415;QD=10.68;ReadPosRankSum=1.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:77,52:129:99:1408,0,2188
17    21208413    rs1657695    C    T    362.94    PASS    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=3.198;DB;DP=132;Dels=0.0;FS=4.92;HRun=0;HaplotypeScore=4.5204;MQ=59.51;MQ0=0;MQRankSum=-0.4;QD=2.75;ReadPosRankSum=0.752;SNPEFF_AMINO_ACID_CHANGE=S220;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21208363_21208440;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:110,21:132:99:393,0,3256
17    21208449    rs1657694    G    T    284.61    PASS    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.876;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5648;MQ=59.28;MQ0=0;MQRankSum=0.082;QD=3.16;ReadPosRankSum=-1.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:73,17:90:99:315,0,2484
17    21208456    rs1657693    A    G    163.40    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=78;Dels=0.0;FS=3.03;HRun=3;HaplotypeScore=2.8221;MQ=59.17;MQ0=0;MQRankSum=-0.563;QD=2.09;ReadPosRankSum=0.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479129    GT:AD:DP:GQ:PL    0/1:65,13:78:99:193,0,2091
17    21215263    rs62055360    G    A    42.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.08;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:72,0,23
17    21215297    rs62055361    G    A    34.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.73;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:4,2:6:64.36:64,0,115
17    21215434    rs35298639    A    AC    447.98    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=4.983;DB;DP=36;FS=0.0;HRun=5;HaplotypeScore=181.2611;IndelType=I;MQ=59.36;MQ0=0;MQRankSum=0.483;QD=12.44;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:21,15:36:99:487,0,540
17    21215446    rs62055363    C    T    522.12    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=40;Dels=0.0;FS=3.114;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.731;QD=13.05;ReadPosRankSum=-2.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:21,19:40:99:552,0,644
17    21215483    rs55935757    C    T    584.49    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.787;DB;DP=41;Dels=0.0;FS=3.005;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.17;QD=14.26;ReadPosRankSum=2.282;SNPEFF_AMINO_ACID_CHANGE=Y239;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21215454_21215593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:21,20:41:99:614,0,556
17    21215537    rs55736474    C    A    439.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.163;DB;DP=44;Dels=0.0;FS=2.7;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.033;QD=9.98;ReadPosRankSum=-0.588;SNPEFF_AMINO_ACID_CHANGE=S257;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21215454_21215593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:24,20:44:99:469,0,654
17    21215552    rs56369732    C    T    526.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.969;DB;DP=46;Dels=0.0;FS=1.194;HRun=0;HaplotypeScore=1.5226;MQ=58.48;MQ0=0;MQRankSum=0.458;QD=11.45;ReadPosRankSum=-0.129;SNPEFF_AMINO_ACID_CHANGE=A262;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21215454_21215593;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:23,23:46:99:557,0,582
17    21215557    rs35206134    G    A    527.93    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.716;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=58.01;MQ0=0;MQRankSum=-1.96;QD=11.23;ReadPosRankSum=0.129;SNPEFF_AMINO_ACID_CHANGE=R264H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21215454_21215593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:23,24:47:99:558,0,658
17    21215637    rs66486636    G    A    280.86    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=23;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=0.6651;MQ=56.92;MQ0=0;MQRankSum=-0.523;QD=12.21;ReadPosRankSum=-1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:11,12:23:99:311,0,277
17    21215643    rs73302034    A    G    170.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.189;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=56.45;MQ0=0;MQRankSum=-0.567;QD=8.52;ReadPosRankSum=-1.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:10,10:20:99:200,0,273
17    21215682    rs73302038    G    A    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.82;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:4,2:6:64.93:65,0,150
17    21216710    rs4994548    T    C    49.01    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.818;QD=4.9;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:7,3:10:79.01:79,0,247
17    21216758    rs5819747    G    GCTTC    239.47    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=103.2152;IndelType=I;MQ=55.99;MQ0=0;MQRankSum=-2.637;QD=15.96;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:10,4:15:99:278,0,380
17    21216788    rs1673840    C    T    148.52    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.037;DB;DP=22;Dels=0.0;FS=1.833;HRun=0;HaplotypeScore=0.8667;MQ=57.3;MQ0=0;MQRankSum=-1.828;QD=6.75;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    0/1:15,7:22:99:179,0,320
17    21216846    rs1657688    G    C    132.57    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.24;DB;DP=20;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=-1.648;QD=6.63;ReadPosRankSum=0.634;SNPEFF_AMINO_ACID_CHANGE=L290;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21216804_21216849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:13,7:20:99:163,0,398
17    21216964    rs1657686    T    C    69.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316920    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:102,9,0
17    21217238    rs1673838    G    C    79.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9713;MQ=56.45;MQ0=0;MQRankSum=-0.421;QD=9.92;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:4,4:8:99:109,0,134
17    21217258    rs4114290    A    G    31.63    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.88;MQ0=0;MQRankSum=-0.718;QD=2.11;ReadPosRankSum=-0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:11,4:15:61.62:62,0,297
17    21217290    rs1673837    G    A    285.96    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=1.107;DB;DP=42;Dels=0.0;FS=5.798;HRun=1;HaplotypeScore=0.8941;MQ=58.22;MQ0=0;MQRankSum=-0.428;QD=6.81;ReadPosRankSum=2.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:29,12:42:99:316,0,960
17    21217397    rs1657685    A    G    2196.45    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.717;DB;DP=199;Dels=0.0;FS=1.641;HRun=1;HaplotypeScore=4.1344;MQ=57.59;MQ0=0;MQRankSum=-1.583;QD=11.04;ReadPosRankSum=0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:112,87:199:99:2226,0,3622
17    21217400    rs1622401    G    A    2282.03    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=4.024;DB;DP=208;Dels=0.0;FS=0.69;HRun=1;HaplotypeScore=5.1211;MQ=57.38;MQ0=0;MQRankSum=-0.888;QD=10.97;ReadPosRankSum=-0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:114,94:208:99:2312,0,3578
17    21217411    rs1657684    T    C    2798.64    PASS    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=1.777;DB;DP=250;DS;Dels=0.0;FS=7.755;HRun=3;HaplotypeScore=3.1424;MQ=57.15;MQ0=0;MQRankSum=-1.671;QD=11.19;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:136,113:250:99:2829,0,4185
17    21217513    rs2363198    G    A    2859.56    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=2.655;DB;DP=222;DS;Dels=0.0;FS=0.544;HRun=0;HaplotypeScore=1.8947;MQ=56.15;MQ0=0;MQRankSum=-3.01;QD=12.88;ReadPosRankSum=0.987;SNPEFF_AMINO_ACID_CHANGE=V310M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21217459_21218525;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361818    GT:AD:DP:GQ:PL    0/1:118,104:222:99:2890,0,3498
17    21217547    rs2363197    T    C    2066.16    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.514;DB;DP=179;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6766;MQ=54.62;MQ0=0;MQRankSum=-4.461;QD=11.54;ReadPosRankSum=-1.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:86,93:179:99:2096,0,2752
17    21217554    rs2363196    C    T    2208.87    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=9.069;DB;DP=179;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3883;MQ=54.48;MQ0=0;MQRankSum=-2.215;QD=12.34;ReadPosRankSum=-1.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:87,92:179:99:2239,0,2295
17    21217566    rs2363375    C    T    1802.64    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=9.385;DB;DP=154;DS;Dels=0.0;FS=3.237;HRun=0;HaplotypeScore=2.0756;MQ=54.36;MQ0=0;MQRankSum=-4.098;QD=11.71;ReadPosRankSum=0.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:80,74:154:99:1833,0,2253
17    21217586    rs2363374    G    T    1393.08    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.436;DB;DP=122;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=53.8;MQ0=0;MQRankSum=-1.656;QD=11.42;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:57,64:122:99:1423,0,1977
17    21217596    rs2363373    C    G    907.81    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=8.463;DB;DP=103;Dels=0.01;FS=0.0;HRun=5;HaplotypeScore=3.5868;MQ=53.8;MQ0=0;MQRankSum=-2.649;QD=8.73;ReadPosRankSum=0.527;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:54,49:103:99:938,0,1584
17    21217660    rs2363195    C    T    414.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.147;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.13;MQ0=0;MQRankSum=-0.66;QD=12.95;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:16,16:32:99:444,0,472
17    21217690    rs2363194    C    T    139.89    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=11.66;ReadPosRankSum=0.689;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527123    GT:AD:DP:GQ:PL    0/1:7,5:12:99:170,0,206
17    21217749    rs2363369    G    C    30.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.2;MQ0=0;MQRankSum=0.358;QD=6.07;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477540    GT:AD:DP:GQ:PL    0/1:2,3:5:59.79:60,0,60
17    21318509    .    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
17    21318546    rs112960185    A    G    74.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=41.96;MQ0=0;MQRankSum=-1.38;QD=12.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:2,4:6:44.98:105,0,45
17    21318552    rs112854769    G    A    76.91    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=44.98;MQ0=0;MQRankSum=-1.754;QD=10.99;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:3,4:7:99:107,0,99
17    21318569    rs74584621    C    T    46.24    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=48.72;MQ0=0;MQRankSum=-1.92;QD=5.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:5,3:9:76.23:76,0,172
17    21318586    rs59891808    G    C    90.25    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9927;MQ=50.39;MQ0=0;MQRankSum=-2.281;QD=6.94;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:6,7:13:99:120,0,177
17    21318588    rs77791524    C    G    47.36    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9927;MQ=50.39;MQ0=0;MQRankSum=-2.927;QD=3.64;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:8,5:13:77.35:77,0,265
17    21318603    rs79809401    C    T    70.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=1.9998;MQ=53.52;MQ0=0;MQRankSum=-2.133;QD=4.71;ReadPosRankSum=-1.733;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:10,5:15:99:101,0,267
17    21318629    rs58862472    C    A    131.18    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.002;DB;DP=16;Dels=0.0;FS=4.832;HRun=0;HaplotypeScore=0.9996;MQ=52.32;MQ0=0;MQRankSum=-2.416;QD=8.2;ReadPosRankSum=-1.827;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:9,6:16:99:161,0,281
17    21318663    rs72846666    G    A    169.42    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.286;DB;DP=30;Dels=0.0;FS=3.646;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-2.805;QD=5.65;ReadPosRankSum=1.296;SNPEFF_AMINO_ACID_CHANGE=A3;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:21,9:30:99:199,0,557
17    21318698    rs1657738    C    T    218.05    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=33;Dels=0.0;FS=12.995;HRun=1;HaplotypeScore=0.0;MQ=54.91;MQ0=0;MQRankSum=0.697;QD=6.61;ReadPosRankSum=0.359;SNPEFF_AMINO_ACID_CHANGE=S15L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:21,12:33:99:248,0,571
17    21318741    rs75113504    C    T    230.94    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=32;Dels=0.0;FS=3.362;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.418;QD=7.22;ReadPosRankSum=0.594;SNPEFF_AMINO_ACID_CHANGE=N29;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:22,10:32:99:261,0,648
17    21318760    rs74880280    G    T    160.04    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.9907;MQ=57.15;MQ0=0;MQRankSum=-0.182;QD=4.85;ReadPosRankSum=1.96;SNPEFF_AMINO_ACID_CHANGE=V36L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:24,9:33:99:190,0,728
17    21318770    rs3752033    G    A    413.01    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.728;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.9704;MQ=57.46;MQ0=0;MQRankSum=1.143;QD=11.16;ReadPosRankSum=-1.112;SNPEFF_AMINO_ACID_CHANGE=R39Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:20,17:37:99:443,0,586
17    21318773    rs3752034    G    A    383.94    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.172;DB;DP=38;Dels=0.0;FS=1.366;HRun=0;HaplotypeScore=7.9681;MQ=57.53;MQ0=0;MQRankSum=1.028;QD=10.1;ReadPosRankSum=-1.057;SNPEFF_AMINO_ACID_CHANGE=R40H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:21,17:38:99:414,0,579
17    21318782    rs78117732    G    A    151.17    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=1.494;DB;DP=37;Dels=0.0;FS=1.831;HRun=0;HaplotypeScore=9.9246;MQ=57.46;MQ0=0;MQRankSum=-0.793;QD=4.09;ReadPosRankSum=0.683;SNPEFF_AMINO_ACID_CHANGE=R43H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:29,8:37:99:181,0,812
17    21318867    rs73979893    G    A    90.86    PASS    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.98;MQ0=0;MQRankSum=-0.018;QD=2.07;ReadPosRankSum=0.228;SNPEFF_AMINO_ACID_CHANGE=M71I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:38,6:44:99:121,0,1147
17    21318897    rs1657739    G    C    431.50    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.871;DB;DP=47;Dels=0.0;FS=4.565;HRun=0;HaplotypeScore=0.0;MQ=57.09;MQ0=0;MQRankSum=0.842;QD=9.18;ReadPosRankSum=-2.087;SNPEFF_AMINO_ACID_CHANGE=R81;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:30,17:47:99:461,0,990
17    21318918    rs79626424    G    A    170.77    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=44;Dels=0.0;FS=5.691;HRun=0;HaplotypeScore=0.9832;MQ=55.21;MQ0=0;MQRankSum=-2.659;QD=3.88;ReadPosRankSum=-0.446;SNPEFF_AMINO_ACID_CHANGE=S88;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:34,10:44:99:201,0,1018
17    21318948    rs112314728    C    T    110.76    HaplotypeScoreFilter13;SnpCluster    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=2.22;DB;DP=35;Dels=0.0;FS=3.675;HRun=2;HaplotypeScore=15.9761;MQ=53.9;MQ0=0;MQRankSum=-3.437;QD=3.16;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=F98;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:27,8:35:99:141,0,832
17    21318951    rs75757803    C    T    81.79    HaplotypeScoreFilter13;SnpCluster    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=1.116;DB;DP=35;Dels=0.0;FS=3.675;HRun=0;HaplotypeScore=15.9761;MQ=53.9;MQ0=0;MQRankSum=-3.796;QD=2.34;ReadPosRankSum=0.67;SNPEFF_AMINO_ACID_CHANGE=G99;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:27,8:35:99:112,0,824
17    21318952    rs8076599    A    G    596.79    HaplotypeScoreFilter13;SnpCluster    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.9765;MQ=53.71;MQ0=0;MQRankSum=-0.773;QD=17.55;ReadPosRankSum=-1.325;SNPEFF_AMINO_ACID_CHANGE=I100V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:11,23:34:99:627,0,284
17    21318969    rs79666990    C    T    110.78    PASS    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=37;Dels=0.0;FS=1.666;HRun=1;HaplotypeScore=0.0;MQ=53.56;MQ0=0;MQRankSum=-3.856;QD=2.99;ReadPosRankSum=0.268;SNPEFF_AMINO_ACID_CHANGE=I105;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:30,7:37:99:141,0,829
17    21318981    rs9909970    C    T    126.36    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=1.128;DB;DP=32;Dels=0.0;FS=1.664;HRun=0;HaplotypeScore=0.734;MQ=53.3;MQ0=0;MQRankSum=-2.942;QD=3.95;ReadPosRankSum=-1.471;SNPEFF_AMINO_ACID_CHANGE=H109;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:24,7:32:99:156,0,668
17    21319007    rs1657740    G    A    143.26    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=0.431;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5732;MQ=55.59;MQ0=0;MQRankSum=1.347;QD=5.51;ReadPosRankSum=1.455;SNPEFF_AMINO_ACID_CHANGE=R118Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:17,9:26:99:173,0,469
17    21319008    rs1657741    G    C    237.78    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.443;DB;DP=26;Dels=0.0;FS=3.442;HRun=0;HaplotypeScore=4.5732;MQ=55.59;MQ0=0;MQRankSum=0.18;QD=9.15;ReadPosRankSum=1.054;SNPEFF_AMINO_ACID_CHANGE=R118;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:14,12:26:99:268,0,402
17    21319069    rs76265595    G    A    84.07    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.547;DB;DP=34;Dels=0.0;FS=1.643;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.912;QD=2.47;ReadPosRankSum=0.274;SNPEFF_AMINO_ACID_CHANGE=E139K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:27,7:34:99:114,0,757
17    21319087    rs75029097    G    A    132.75    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=-1.199;QD=3.49;ReadPosRankSum=1.159;SNPEFF_AMINO_ACID_CHANGE=G145S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:31,7:38:99:163,0,869
17    21319110    rs77283567    G    A    94    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=1.679;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.33;MQ0=0;MQRankSum=0.129;QD=2.24;ReadPosRankSum=-0.646;SNPEFF_AMINO_ACID_CHANGE=T152;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:34,8:42:99:124,0,933
17    21319121    rs1714864    C    T    346.83    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.0;MQ0=0;MQRankSum=1.928;QD=9.91;ReadPosRankSum=-0.234;SNPEFF_AMINO_ACID_CHANGE=P156L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:23,12:35:99:377,0,716
17    21319171    rs73313922    G    A    309.04    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=3.214;DB;DP=50;Dels=0.0;FS=1.314;HRun=1;HaplotypeScore=1.9787;MQ=58.22;MQ0=0;MQRankSum=-0.375;QD=6.18;ReadPosRankSum=1.261;SNPEFF_AMINO_ACID_CHANGE=D173N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:38,12:50:99:339,0,1119
17    21319208    rs73979896    C    T    319.14    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.153;DB;DP=58;Dels=0.0;FS=1.206;HRun=0;HaplotypeScore=0.8941;MQ=58.47;MQ0=0;MQRankSum=0.627;QD=5.5;ReadPosRankSum=-0.518;SNPEFF_AMINO_ACID_CHANGE=A185V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:44,14:58:99:349,0,1417
17    21319230    rs1657742    G    C    348.35    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.585;DB;DP=58;Dels=0.0;FS=3.951;HRun=0;HaplotypeScore=1.9416;MQ=58.47;MQ0=0;MQRankSum=1.607;QD=6.01;ReadPosRankSum=-1.557;SNPEFF_AMINO_ACID_CHANGE=Q192H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:39,19:58:99:378,0,1231
17    21319251    rs73313923    C    T    193.37    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.556;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=-1.166;QD=3.33;ReadPosRankSum=-0.203;SNPEFF_AMINO_ACID_CHANGE=N199;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:47,11:58:99:223,0,1325
17    21319272    rs73313926    C    T    136.28    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.286;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.059;QD=2.52;ReadPosRankSum=0.343;SNPEFF_AMINO_ACID_CHANGE=D206;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:45,9:54:99:166,0,1274
17    21319285    rs72846667    C    T    163.53    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.27;MQ0=0;MQRankSum=-0.509;QD=3.03;ReadPosRankSum=0.012;SNPEFF_AMINO_ACID_CHANGE=L211F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:45,9:54:99:194,0,1466
17    21319302    rs1657743    T    C    763.59    HaplotypeScoreFilter13;SnpCluster    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.686;DB;DP=48;Dels=0.0;FS=6.261;HRun=0;HaplotypeScore=25.6326;MQ=57.56;MQ0=0;MQRankSum=-0.134;QD=15.91;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=G216;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:22,26:48:99:794,0,638
17    21319309    .    C    T    153.47    HaplotypeScoreFilter13;SnpCluster    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.73;DP=55;Dels=0.0;FS=14.138;HRun=0;HaplotypeScore=25.7945;MQ=56.56;MQ0=0;MQRankSum=0.709;QD=2.79;ReadPosRankSum=1.181;SNPEFF_AMINO_ACID_CHANGE=R219C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:44,11:55:99:183,0,1255
17    21319311    rs72846668    C    T    290.67    HaplotypeScoreFilter13;SnpCluster    AB=0.754;AC=1;AF=0.50;AN=2;BaseQRankSum=0.028;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=26.6885;MQ=56.68;MQ0=0;MQRankSum=0.104;QD=5.1;ReadPosRankSum=-1.315;SNPEFF_AMINO_ACID_CHANGE=R219;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:43,14:57:99:321,0,1324
17    21319359    rs147653221    G    A    114.37    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=48;Dels=0.0;FS=5.963;HRun=0;HaplotypeScore=2.2772;MQ=53.84;MQ0=0;MQRankSum=-1.29;QD=2.38;ReadPosRankSum=1.927;SNPEFF_AMINO_ACID_CHANGE=P235;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:40,8:48:99:144,0,1203
17    21319392    rs73979899    G    A    293.51    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.549;DB;DP=46;Dels=0.0;FS=2.837;HRun=0;HaplotypeScore=8.4494;MQ=52.31;MQ0=0;MQRankSum=-3.477;QD=6.38;ReadPosRankSum=-0.915;SNPEFF_AMINO_ACID_CHANGE=L246;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:30,16:46:99:324,0,916
17    21319399    rs4985866    A    G    49.93    QDFilter2    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=0.403;DB;DP=45;Dels=0.0;FS=1.684;HRun=1;HaplotypeScore=10.1621;MQ=53.29;MQ0=0;MQRankSum=1.349;QD=1.11;ReadPosRankSum=-0.158;SNPEFF_AMINO_ACID_CHANGE=I249V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:39,6:45:79.92:80,0,1191
17    21319436    rs77270326    G    A    65.61    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=2.73;DB;DP=36;Dels=0.0;FS=3.746;HRun=0;HaplotypeScore=0.8321;MQ=53.23;MQ0=0;MQRankSum=-3.987;QD=1.82;ReadPosRankSum=-0.648;SNPEFF_AMINO_ACID_CHANGE=R261H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:28,8:36:95.60:96,0,822
17    21319439    rs76684759    T    G    58.76    QDFilter2    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=1.388;DB;DP=38;Dels=0.0;FS=3.73;HRun=0;HaplotypeScore=0.9997;MQ=52.92;MQ0=0;MQRankSum=-4.457;QD=1.55;ReadPosRankSum=-1.206;SNPEFF_AMINO_ACID_CHANGE=I262S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:29,9:38:88.75:89,0,924
17    21319452    rs73313929    G    A    32.17    QDFilter2    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=41;Dels=0.0;FS=3.82;HRun=0;HaplotypeScore=2.8302;MQ=54.1;MQ0=0;MQRankSum=-4.298;QD=0.78;ReadPosRankSum=-0.609;SNPEFF_AMINO_ACID_CHANGE=S266;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:33,8:41:62.16:62,0,863
17    21319473    rs1657744    G    A    461.95    HaplotypeScoreFilter13    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=0.641;DB;DP=47;Dels=0.0;FS=4.756;HRun=1;HaplotypeScore=16.3216;MQ=53.7;MQ0=0;MQRankSum=2.676;QD=9.83;ReadPosRankSum=1.043;SNPEFF_AMINO_ACID_CHANGE=E273;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:29,18:47:99:492,0,710
17    21319488    rs77176173    C    T    83.71    QDFilter2    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.454;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5677;MQ=53.49;MQ0=0;MQRankSum=-3.098;QD=1.58;ReadPosRankSum=0.122;SNPEFF_AMINO_ACID_CHANGE=S278;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:40,13:53:99:114,0,1326
17    21319519    rs78113532    G    C    64.85    QDFilter2    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=0.464;DB;DP=65;Dels=0.0;FS=1.394;HRun=0;HaplotypeScore=0.0;MQ=54.37;MQ0=0;MQRankSum=-2.932;QD=1.0;ReadPosRankSum=0.166;SNPEFF_AMINO_ACID_CHANGE=E289Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:51,14:65:94.85:95,0,1650
17    21319523    rs77987694    C    T    59.35    QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=2.322;DB;DP=64;Dels=0.0;FS=5.444;HRun=0;HaplotypeScore=0.0;MQ=55.06;MQ0=0;MQRankSum=-2.303;QD=0.93;ReadPosRankSum=1.566;SNPEFF_AMINO_ACID_CHANGE=T290M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:52,12:64:89.34:89,0,1592
17    21319543    rs80335301    G    A    78.60    QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=0.075;DB;DP=76;Dels=0.0;FS=5.128;HRun=0;HaplotypeScore=0.734;MQ=55.4;MQ0=0;MQRankSum=-2.495;QD=1.03;ReadPosRankSum=-0.483;SNPEFF_AMINO_ACID_CHANGE=V297I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:61,15:76:99:109,0,2000
17    21319560    rs74801394    G    T    178.55    PASS    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.605;DB;DP=78;Dels=0.0;FS=1.314;HRun=1;HaplotypeScore=0.9469;MQ=55.96;MQ0=0;MQRankSum=-2.58;QD=2.29;ReadPosRankSum=-1.828;SNPEFF_AMINO_ACID_CHANGE=M302I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:62,16:78:99:209,0,1946
17    21319650    rs112163749    CGAG    C    642.01    PASS    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=6.787;DB;DP=117;FS=15.024;HRun=0;HaplotypeScore=543.665;IndelType=D;MQ=57.42;MQ0=0;MQRankSum=-2.921;QD=5.4;ReadPosRankSum=0.843;SNPEFF_AMINO_ACID_CHANGE=E333-;SNPEFF_CODON_CHANGE=gag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:98,21:117:99:681,0,5923
17    21319682    rs80203231    C    T    368.13    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=3.68;DB;DP=111;Dels=0.0;FS=3.287;HRun=1;HaplotypeScore=3.3499;MQ=56.46;MQ0=0;MQRankSum=-4.643;QD=3.32;ReadPosRankSum=-1.921;SNPEFF_AMINO_ACID_CHANGE=S343L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:87,24:111:99:398,0,2437
17    21319716    rs78135255    G    A    239.25    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.224;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9815;MQ=56.21;MQ0=0;MQRankSum=-5.027;QD=2.66;ReadPosRankSum=-0.735;SNPEFF_AMINO_ACID_CHANGE=T354;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:69,21:90:99:269,0,2339
17    21319728    rs76681424    T    C    311.06    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.347;DB;DP=85;Dels=0.0;FS=2.406;HRun=0;HaplotypeScore=0.0;MQ=56.91;MQ0=0;MQRankSum=-3.774;QD=3.66;ReadPosRankSum=0.481;SNPEFF_AMINO_ACID_CHANGE=S358;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:65,19:85:99:341,0,2257
17    21319743    rs76267885    A    G    480.59    PASS    AB=0.735;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.7;MQ0=0;MQRankSum=-2.936;QD=5.79;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=V363;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:61,22:83:99:511,0,1958
17    21319767    rs1612176    C    G    623.51    HaplotypeScoreFilter13    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DB;DP=71;Dels=0.0;FS=1.134;HRun=1;HaplotypeScore=22.6268;MQ=56.91;MQ0=0;MQRankSum=-2.39;QD=8.78;ReadPosRankSum=-0.01;SNPEFF_AMINO_ACID_CHANGE=S371R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:24,25:71:99:654,0,572
17    21319785    rs1657745    C    T    559.96    HaplotypeScoreFilter13    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.73;DB;DP=65;Dels=0.0;FS=1.072;HRun=0;HaplotypeScore=23.0113;MQ=57.25;MQ0=0;MQRankSum=1.939;QD=8.61;ReadPosRankSum=1.31;SNPEFF_AMINO_ACID_CHANGE=Y377;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:45,20:65:99:590,0,1213
17    21319786    rs78547883    G    A    592.53    HaplotypeScoreFilter13    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=0.036;DB;DP=65;Dels=0.0;FS=3.804;HRun=1;HaplotypeScore=23.0113;MQ=57.25;MQ0=0;MQRankSum=-1.892;QD=9.12;ReadPosRankSum=0.079;SNPEFF_AMINO_ACID_CHANGE=E378K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:42,23:65:99:623,0,1206
17    21319845    rs72846670    C    T    262.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.022;DB;DP=34;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=0.0;MQ=56.37;MQ0=0;MQRankSum=-1.221;QD=7.71;ReadPosRankSum=0.701;SNPEFF_AMINO_ACID_CHANGE=D397;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:18,15:34:99:292,0,456
17    21319860    rs2917720    C    A    423.32    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.928;DB;DP=28;Dels=0.0;FS=2.865;HRun=1;HaplotypeScore=6.9615;MQ=56.45;MQ0=0;MQRankSum=-1.361;QD=15.12;ReadPosRankSum=2.103;SNPEFF_AMINO_ACID_CHANGE=D402E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:6,15:28:99:453,0,145
17    21319868    rs73979902    G    T    350.28    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.094;DB;DP=26;Dels=0.0;FS=1.815;HRun=0;HaplotypeScore=3.9694;MQ=57.1;MQ0=0;MQRankSum=-1.006;QD=13.47;ReadPosRankSum=1.387;SNPEFF_AMINO_ACID_CHANGE=S405I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:12,13:26:99:380,0,389
17    21319908    rs66981137    C    T    259.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.852;DB;DP=20;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.34;QD=12.97;ReadPosRankSum=-0.038;SNPEFF_AMINO_ACID_CHANGE=G418;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:10,10:20:99:289,0,295
17    21319943    rs5021699    A    G    80.32    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=56.62;MQ0=0;MQRankSum=1.626;QD=5.74;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=E430G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:10,4:14:99:110,0,293
17    21319955    rs76506689    G    A    45.56    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.505;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=57.05;MQ0=0;MQRankSum=0.072;QD=2.85;ReadPosRankSum=-0.505;SNPEFF_AMINO_ACID_CHANGE=*434;SNPEFF_CODON_CHANGE=tGa/tAa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_17_21318599_21320404;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:13,3:16:75.55:76,0,368
17    21319989    rs5021700    C    T    54.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=1.9998;MQ=58.05;MQ0=0;MQRankSum=0.365;QD=4.58;ReadPosRankSum=-0.365;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:6,4:12:84.93:85,0,130
17    21319993    rs5021701    T    C    86.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=1.9998;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=7.89;ReadPosRankSum=0.717;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:6,5:11:99:117,0,105
17    21320114    rs5021704    T    G    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331718    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:69,0,34
17    21407795    rs12952340    G    T    280.46    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.501;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.66;MQ0=0;MQRankSum=0.588;QD=17.53;ReadPosRankSum=-0.718;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-822E23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482905    GT:AD:DP:GQ:PL    0/1:5,11:16:99:310,0,112
17    21407854    rs12952569    G    A    529.31    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=3.618;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.04;MQ0=0;MQRankSum=0.697;QD=18.25;ReadPosRankSum=0.966;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-822E23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482905    GT:AD:DP:GQ:PL    0/1:11,18:29:99:559,0,219
17    21407858    rs12937131    C    T    554.24    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=1.078;DB;DP=29;Dels=0.0;FS=1.631;HRun=0;HaplotypeScore=0.0;MQ=54.6;MQ0=0;MQRankSum=0.069;QD=19.11;ReadPosRankSum=-0.069;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-822E23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482905    GT:AD:DP:GQ:PL    0/1:10,19:29:99:584,0,269
17    21480997    rs9898898    A    G    1431.39    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.33;DB;DP=110;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.0;MQ=48.64;MQ0=0;MQRankSum=1.221;QD=13.01;ReadPosRankSum=0.094;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C17orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426261    GT:AD:DP:GQ:PL    0/1:56,54:110:99:1461,0,1513
17    21481436    rs7501910    G    A    84.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=10.56;ReadPosRankSum=0.922;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C17orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426261    GT:AD:DP:GQ:PL    0/1:4,4:8:99:114,0,141
17    21535856    rs9900476    A    T    156.79    MQFilter40    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.57;MQ0=2;MQRankSum=-0.751;QD=14.25;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,10:11:18.25:187,0,18
17    21535937    rs9325912    T    C    2078.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=47.51;MQ0=12;MQRankSum=2.267;QD=22.11;ReadPosRankSum=-1.168;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:8,86:94:15.40:2111,15,0
17    21535972    rs10221228    A    G    146.77    HaplotypeScoreFilter13;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.769;DB;DP=114;Dels=0.0;FS=1.392;HRun=0;HaplotypeScore=29.1755;MQ=48.25;MQ0=14;MQRankSum=-7.238;QD=1.29;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:76,38:114:99:177,0,2557
17    21535979    rs113145914    TCA    T    72.82    QDFilter2    AB=0.799;AC=1;AF=0.50;AN=2;BaseQRankSum=4.302;DB;DP=97;FS=0.0;HRun=0;HaplotypeScore=661.5604;IndelType=D;MQ=49.16;MQ0=11;MQRankSum=-4.683;QD=0.61;ReadPosRankSum=-0.235;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:89,30:97:99:112,0,4340
17    21536035    rs144926887    A    G    981.18    PASS    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=1.025;DB;DP=147;Dels=0.0;FS=10.517;HRun=0;HaplotypeScore=6.298;MQ=49.75;MQ0=20;MQRankSum=1.579;QD=6.67;ReadPosRankSum=1.402;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:110,36:147:99:1011,0,2385
17    21536065    rs9325914    A    G    461.98    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.702;DB;DP=169;Dels=0.0;FS=4.117;HRun=0;HaplotypeScore=10.4023;MQ=49.77;MQ0=18;MQRankSum=-7.635;QD=2.73;ReadPosRankSum=-3.088;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:110,59:169:99:492,0,3560
17    21536106    rs9325915    T    C    559.30    HaplotypeScoreFilter13    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=156;Dels=0.0;FS=35.766;HRun=2;HaplotypeScore=17.0308;MQ=49.17;MQ0=15;MQRankSum=-8.485;QD=3.59;ReadPosRankSum=4.594;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:95,61:156:99:589,0,3080
17    21536168    rs9325916    G    A    591.78    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.24;DB;DP=88;Dels=0.0;FS=14.623;HRun=0;HaplotypeScore=0.0;MQ=48.71;MQ0=6;MQRankSum=-6.574;QD=6.72;ReadPosRankSum=-1.125;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:48,40:88:99:622,0,1639
17    21536212    rs73309479    A    G    323.37    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=4.015;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=44.91;MQ0=2;MQRankSum=-5.03;QD=5.58;ReadPosRankSum=2.808;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,21:58:99:353,0,1039
17    21536250    rs62049662    G    A    361.28    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.315;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.05;MQ0=1;MQRankSum=-4.031;QD=9.51;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,22:38:99:391,0,553
17    21536277    rs9747488    C    T    232.57    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.19;MQ0=0;MQRankSum=-3.592;QD=12.24;ReadPosRankSum=1.395;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,12:19:99:263,0,230
17    21544395    rs9674474    T    C    630.93    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.189;DB;DP=98;Dels=0.0;FS=3.113;HRun=1;HaplotypeScore=0.9332;MQ=57.49;MQ0=0;MQRankSum=2.463;QD=6.37;ReadPosRankSum=0.786;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:69,29:98:99:661,0,2285
17    21544414    rs9909512    G    T    2557.13    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.963;DB;DP=137;Dels=0.0;FS=2.134;HRun=0;HaplotypeScore=6.1142;MQ=57.48;MQ0=1;MQRankSum=1.849;QD=18.67;ReadPosRankSum=1.798;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:53,84:137:99:2587,0,1248
17    21544462    rs9285742    G    A    1136.01    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DB;DP=187;Dels=0.0;FS=2.217;HRun=0;HaplotypeScore=2.3893;MQ=56.19;MQ0=4;MQRankSum=-0.324;QD=6.07;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:136,50:187:99:1166,0,4003
17    21544470    rs9285743    A    G    1227.90    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.568;DB;DP=198;Dels=0.0;FS=2.096;HRun=0;HaplotypeScore=4.4437;MQ=56.32;MQ0=4;MQRankSum=-0.672;QD=6.2;ReadPosRankSum=-1.605;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:144,54:198:99:1258,0,4106
17    21544587    rs9285744    A    G    1245.26    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=2.902;DB;DP=138;Dels=0.0;FS=2.686;HRun=0;HaplotypeScore=2.9175;MQ=58.99;MQ0=1;MQRankSum=-0.951;QD=9.02;ReadPosRankSum=-0.86;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:86,52:138:99:1275,0,2719
17    21544646    rs9285745    T    C    802.82    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.981;DB;DP=66;Dels=0.0;FS=3.632;HRun=0;HaplotypeScore=2.494;MQ=58.7;MQ0=0;MQRankSum=-0.521;QD=12.16;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,29:66:99:833,0,1213
17    21544674    rs9747056    T    A    336.62    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=59.19;MQ0=0;MQRankSum=-0.711;QD=8.86;ReadPosRankSum=-0.409;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,14:38:99:367,0,842
17    21562069    rs9748038    C    G    628.71    HaplotypeScoreFilter13    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=54;Dels=0.0;FS=2.914;HRun=1;HaplotypeScore=14.7106;MQ=53.55;MQ0=1;MQRankSum=2.332;QD=11.64;ReadPosRankSum=1.689;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,24:54:99:659,0,896
17    21562078    rs9325954    C    T    779.91    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=69;Dels=0.0;FS=4.367;HRun=1;HaplotypeScore=12.8241;MQ=52.81;MQ0=0;MQRankSum=2.093;QD=11.3;ReadPosRankSum=0.476;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:41,27:69:99:810,0,1208
17    21562091    .    G    C    36.67    QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.825;DP=87;Dels=0.0;FS=1.711;HRun=0;HaplotypeScore=4.6369;MQ=48.41;MQ0=4;MQRankSum=-4.261;QD=0.42;ReadPosRankSum=-1.15;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:72,14:87:66.66:67,0,2264
17    21562101    .    T    C    109.55    QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=2.744;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.35;MQ0=6;MQRankSum=-4.581;QD=1.1;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:81,19:100:99:140,0,2287
17    21562110    rs76043616    G    T    103.58    QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=104;Dels=0.0;FS=1.312;HRun=0;HaplotypeScore=4.5077;MQ=47.97;MQ0=7;MQRankSum=-4.748;QD=1.0;ReadPosRankSum=0.757;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:84,20:104:99:134,0,2294
17    21562146    rs78173938    C    G    238.78    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.998;DB;DP=116;Dels=0.0;FS=7.769;HRun=0;HaplotypeScore=10.1059;MQ=46.82;MQ0=7;MQRankSum=-5.966;QD=2.06;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:87,28:116:99:269,0,2413
17    21562187    rs75704404    C    G    48.41    QDFilter2    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=4.006;DB;DP=91;Dels=0.0;FS=20.571;HRun=3;HaplotypeScore=8.5191;MQ=46.95;MQ0=11;MQRankSum=-5.946;QD=0.53;ReadPosRankSum=1.433;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:63,26:91:78.40:78,0,2071
17    21562201    rs77565719    A    C    52.77    HaplotypeScoreFilter13;QDFilter2    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=5.575;DB;DP=82;Dels=0.0;FS=20.06;HRun=2;HaplotypeScore=14.1937;MQ=46.68;MQ0=8;MQRankSum=-6.331;QD=0.64;ReadPosRankSum=-0.598;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:56,26:82:82.76:83,0,1870
17    21562283    rs78871793    C    A    157.10    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.777;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9142;MQ=44.22;MQ0=8;MQRankSum=-5.077;QD=2.01;ReadPosRankSum=2.581;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:53,25:78:99:187,0,1477
17    21562296    rs77440273    A    G    288.02    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.413;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.8765;MQ=43.86;MQ0=7;MQRankSum=-6.21;QD=3.89;ReadPosRankSum=1.824;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:39,35:74:99:318,0,1261
17    21562345    .    G    T    49.42    MQFilter40;QDFilter2    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.128;DP=41;Dels=0.0;FS=2.5;HRun=0;HaplotypeScore=6.8404;MQ=37.58;MQ0=7;MQRankSum=-1.194;QD=1.21;ReadPosRankSum=-0.571;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,8:41:79.41:79,0,623
17    21562348    rs113305125    A    G    64.61    MQFilter40;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.7;DB;DP=37;Dels=0.0;FS=6.043;HRun=0;HaplotypeScore=8.5668;MQ=36.88;MQ0=7;MQRankSum=0.868;QD=1.75;ReadPosRankSum=-0.084;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,6:37:94.60:95,0,439
17    21562500    rs79308949    G    A    36.18    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=44.84;MQ0=1;MQRankSum=-0.736;QD=9.05;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,3:4:25.33:66,0,25
17    21730703    rs72842072    G    A    913.97    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=4.495;DB;DP=83;Dels=0.0;FS=0.91;HRun=0;HaplotypeScore=1.933;MQ=59.22;MQ0=0;MQRankSum=0.106;QD=11.01;ReadPosRankSum=-1.148;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:48,35:83:99:944,0,1357
17    21731041    rs145087783    G    A    1376.50    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.12;DB;DP=130;Dels=0.0;FS=1.503;HRun=1;HaplotypeScore=3.3001;MQ=47.97;MQ0=5;MQRankSum=-1.525;QD=10.59;ReadPosRankSum=-0.858;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:71,58:130:99:1406,0,1865
17    25308930    rs112805061    C    T    501.68    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.025;QD=11.94;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,19:42:99:532,0,736
17    25628820    rs9303634    T    C    1318.27    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=3.034;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.49;MQ0=0;MQRankSum=0.565;QD=14.49;ReadPosRankSum=-1.001;SNPEFF_AMINO_ACID_CHANGE=L16S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_25628814_25628982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262394    GT:AD:DP:GQ:PL    0/1:45,46:91:99:1348,0,1459
17    25630388    rs2270761    T    C    984.89    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=2.903;DB;DP=58;Dels=0.0;FS=1.113;HRun=2;HaplotypeScore=2.9996;MQ=59.6;MQ0=0;MQRankSum=-1.212;QD=16.98;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262394    GT:AD:DP:GQ:PL    0/1:24,34:58:99:1015,0,719
17    25631693    rs3762809    A    G    117.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=14.73;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262394    GT:AD:DP:GQ:PL    0/1:3,5:8:97.15:148,0,97
17    25636449    rs33949241    C    T    277.76    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=17.36;ReadPosRankSum=1.482;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427287    GT:AD:DP:GQ:PL    0/1:7,9:16:99:308,0,241
17    25636954    rs11080131    T    G    33.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.39;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427287    GT:AD:DP:GQ:PL    0/1:2,2:4:63.55:64,0,71
17    25639104    rs11305587    CT    C    125.61    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=3.536;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=50.735;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.455;QD=5.46;ReadPosRankSum=0.945;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WSB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427287    GT:AD:DP:GQ:PL    0/1:17,6:23:99:165,0,696
17    25753033    rs13341669    T    C    239.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.58;MQ0=1;QD=23.91;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:272,21,0
17    25783681    rs1829803    A    G    69.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=17.3;SNPEFF_AMINO_ACID_CHANGE=A4;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_25783670_25783900;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319524    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:101,9,0
17    25887530    rs2945397    G    C    1481.49    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=2.175;DB;DP=107;Dels=0.0;FS=1.693;HRun=2;HaplotypeScore=2.3002;MQ=59.57;MQ0=0;MQRankSum=-0.723;QD=13.85;ReadPosRankSum=-0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    0/1:50,56:107:99:1511,0,1274
17    25887541    rs2948526    C    T    1176.49    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=93;Dels=0.0;FS=1.898;HRun=0;HaplotypeScore=3.0342;MQ=59.5;MQ0=0;MQRankSum=0.044;QD=12.65;ReadPosRankSum=0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    0/1:46,47:93:99:1206,0,1224
17    25887571    rs61054489    T    C    883.15    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.327;DB;DP=54;Dels=0.0;FS=2.995;HRun=2;HaplotypeScore=2.4722;MQ=59.57;MQ0=0;MQRankSum=-0.157;QD=16.35;ReadPosRankSum=-1.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    0/1:23,31:54:99:913,0,788
17    25912828    rs2945373    A    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    0/1:2,2:4:62.67:72,0,63
17    25924596    rs16966333    C    T    170.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:204,15,0
17    25931637    rs2289567    G    T    474.92    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.85;DB;DP=39;Dels=0.0;FS=6.899;HRun=0;HaplotypeScore=2.7933;MQ=58.81;MQ0=0;MQRankSum=1.539;QD=12.18;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    0/1:21,17:39:99:505,0,684
17    25944235    rs4267373    A    G    393.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    1/1:0,15:15:36.07:427,36,0
17    25944557    rs4260103    T    C    204.49    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=21;Dels=0.0;FS=2.969;HRun=0;HaplotypeScore=0.8321;MQ=57.77;MQ0=0;MQRankSum=0.688;QD=9.74;ReadPosRankSum=0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    0/1:13,8:21:99:234,0,410
17    25944596    rs4268811    A    C    32.27    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=4.03;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268763    GT:AD:DP:GQ:PL    0/1:5,3:8:62.26:62,0,177
17    25969440    rs3094268    A    G    128.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.4;MQ0=1;MQRankSum=-2.014;QD=6.45;ReadPosRankSum=1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448970    GT:AD:DP:GQ:PL    0/1:12,8:20:99:159,0,380
17    25972311    rs2304886    C    T    1163.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.344;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=40.67;MQ0=1;MQRankSum=-0.478;QD=8.88;ReadPosRankSum=-0.255;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448970    GT:AD:DP:GQ:PL    0/1:78,52:131:99:1193,0,1831
17    25974258    rs4239242    T    C    657.53    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.83;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6671;MQ=59.54;MQ0=0;MQRankSum=-0.273;QD=13.15;ReadPosRankSum=-0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302228    GT:AD:DP:GQ:PL    0/1:27,23:50:99:688,0,917
17    26079689    rs117094752    T    C    203.08    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.424;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.97;MQ0=0;MQRankSum=-0.555;QD=15.62;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313735    GT:AD:DP:GQ:PL    0/1:6,7:13:99:233,0,203
17    26092555    rs2297512    G    A    137    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=24;Dels=0.0;FS=9.084;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.807;QD=5.71;ReadPosRankSum=0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302153    GT:AD:DP:GQ:PL    0/1:15,9:24:99:167,0,446
17    26092631    rs1060822    A    G    460.63    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.723;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.226;QD=15.35;ReadPosRankSum=1.185;SNPEFF_AMINO_ACID_CHANGE=G747;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_26092561_26092742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379105    GT:AD:DP:GQ:PL    0/1:14,16:30:99:491,0,443
17    26093792    rs4796034    G    A    32.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.13;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302153    GT:AD:DP:GQ:PL    0/1:2,2:4:62.53:63,0,70
17    26096473    rs9282801    C    A    131.01    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=10.92;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302153    GT:AD:DP:GQ:PL    0/1:7,5:12:99:161,0,248
17    26100321    rs2248814    A    G    686.45    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.839;DB;DP=58;Dels=0.0;FS=2.888;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.987;QD=11.84;ReadPosRankSum=-0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302153    GT:AD:DP:GQ:PL    0/1:34,24:58:99:716,0,1198
17    26108040    rs2297520    T    C    244.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.668;DB;DP=33;Dels=0.0;FS=1.465;HRun=0;HaplotypeScore=2.8809;MQ=58.59;MQ0=0;MQRankSum=0.21;QD=7.41;ReadPosRankSum=0.325;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302153    GT:AD:DP:GQ:PL    0/1:22,11:33:99:274,0,672
17    26109030    rs3729508    T    C    334.13    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=17;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.474;QD=19.65;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302153    GT:AD:DP:GQ:PL    0/1:5,12:17:99:364,0,119
17    26125918    rs3730013    G    A    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302153    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,109
17    26206414    rs3751972    C    A    1015.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C17orf108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503642    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:1049,81,0
17    26495361    .    CA    C    77.96    PASS    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=0.927;DP=39;FS=0.0;HRun=16;HaplotypeScore=188.6616;IndelType=D;MQ=59.41;MQ0=0;MQRankSum=0.402;QD=2.0;ReadPosRankSum=-2.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407008    GT:AD:DP:GQ:PL    0/1:25,9:39:99:117,0,373
17    26646434    rs5819836    G    GC    389.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=30.365;IndelType=I;MQ=58.63;MQ0=0;QD=43.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226230    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:432,27,0
17    26655878    rs148429122    GAAGA    G    230.37    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.266;DB;DP=21;FS=4.523;HRun=0;HaplotypeScore=95.6416;IndelType=D;MQ=52.26;MQ0=0;MQRankSum=-2.06;QD=10.97;ReadPosRankSum=-0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322326    GT:AD:DP:GQ:PL    0/1:15,6:21:99:269,0,801
17    26668560    rs2234117    C    T    157.27    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=8.74;ReadPosRankSum=-1.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226225    GT:AD:DP:GQ:PL    0/1:11,7:18:99:187,0,346
17    26669245    rs5819838    A    AG    396.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=19.3802;IndelType=I;MQ=61.07;MQ0=0;QD=39.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFAIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226225    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:439,30,0
17    26684283    rs11314852    GT    G    191.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=24.4527;IndelType=D;MQ=61.53;MQ0=0;QD=27.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM199;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292114    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:234,18,0
17    26684390    rs11448856    G    GC    318.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=56.8194;IndelType=I;MQ=61.19;MQ0=0;QD=35.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM199;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292114    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
17    26684449    rs4795429    G    C    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.51;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM199;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292114    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
17    26687484    rs78534465    G    GC    778.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=34.9096;IndelType=I;MQ=62.24;MQ0=0;QD=40.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTB-96E2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555059    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:820,57,0
17    26687898    rs11382918    G    GC    991.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=3;HaplotypeScore=56.4715;IndelType=I;MQ=61.24;MQ0=0;QD=38.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTB-96E2.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555059    GT:AD:DP:GQ:PL    1/1:1,25:26:75.25:1034,75,0
17    26691321    rs9910163    A    G    114.14    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=8.78;ReadPosRankSum=-0.817;SNPEFF_AMINO_ACID_CHANGE=L206S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_26691290_26691670;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438614    GT:AD:DP:GQ:PL    0/1:8,5:13:99:144,0,276
17    26691760    rs2277668    G    C    1243.23    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=81;Dels=0.0;FS=2.242;HRun=1;HaplotypeScore=3.0313;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=15.35;ReadPosRankSum=0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC002094.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226218    GT:AD:DP:GQ:PL    0/1:39,42:81:99:1273,0,1253
17    26691916    rs2277667    T    C    413.56    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.704;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.214;QD=15.91;ReadPosRankSum=0.153;SNPEFF_AMINO_ACID_CHANGE=L56;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_26691817_26691977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438614    GT:AD:DP:GQ:PL    0/1:10,16:26:99:444,0,261
17    26692224    rs11396339    A    AG    1427.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=2;HaplotypeScore=95.6056;IndelType=I;MQ=59.38;MQ0=0;QD=38.58;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_26692143_26692265;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTN;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000431468    GT:AD:DP:GQ:PL    1/1:3,34:37:99:1469,102,0
17    26694483    rs2227728    A    G    139.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=15;Dels=0.0;FS=4.832;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.551;QD=9.3;ReadPosRankSum=1.898;SNPEFF_AMINO_ACID_CHANGE=I32T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_26694472_26694502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438614    GT:AD:DP:GQ:PL    0/1:10,5:15:99:170,0,295
17    26694661    rs2227726    G    A    685.39    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=3.697;DB;DP=47;Dels=0.0;FS=1.621;HRun=0;HaplotypeScore=0.9332;MQ=56.47;MQ0=0;MQRankSum=1.604;QD=14.58;ReadPosRankSum=0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC002094.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539746    GT:AD:DP:GQ:PL    0/1:21,26:47:99:715,0,591
17    26694880    rs139385926    G    A    237.82    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=16;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.386;QD=14.86;ReadPosRankSum=1.003;SNPEFF_AMINO_ACID_CHANGE=R394C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_26694736_26695080;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC002094.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226218    GT:AD:DP:GQ:PL    0/1:7,9:16:99:268,0,124
17    26695704    rs2227725    A    G    1057.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC002094.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542029    GT:AD:DP:GQ:PL    1/1:0,34:34:87.22:1090,87,0
17    26695832    rs2071379    A    G    386.39    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.67;MQ0=0;MQRankSum=0.297;QD=11.04;ReadPosRankSum=0.542;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC002094.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542029    GT:AD:DP:GQ:PL    0/1:21,14:35:99:416,0,694
17    26696477    rs2071378    A    G    533.39    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.168;DB;DP=37;Dels=0.0;FS=1.348;HRun=3;HaplotypeScore=3.2856;MQ=60.0;MQ0=0;MQRankSum=-0.973;QD=14.42;ReadPosRankSum=-0.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC002094.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542029    GT:AD:DP:GQ:PL    0/1:13,22:37:99:563,0,409
17    26696482    rs2071377    C    T    643.64    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DB;DP=36;Dels=0.0;FS=3.014;HRun=0;HaplotypeScore=4.1178;MQ=60.0;MQ0=0;MQRankSum=-0.128;QD=17.88;ReadPosRankSum=0.802;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC002094.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542029    GT:AD:DP:GQ:PL    0/1:15,21:36:99:674,0,445
17    26699121    rs7212814    G    C    238.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=18.36;SNPEFF_AMINO_ACID_CHANGE=R23P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_26698987_26699206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SARM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457710    GT:AD:DP:GQ:PL    1/1:0,13:13:24.05:272,24,0
17    26708075    rs13339695    A    G    58.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=7.31;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SARM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003834    GT:AD:DP:GQ:PL    0/1:5,3:8:88.46:88,0,150
17    26727721    rs5819844    GA    G    1157.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=2;HaplotypeScore=172.8495;IndelType=D;MQ=59.96;MQ0=0;QD=32.16;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_26727722_26727783;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC46A1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000440501    GT:AD:DP:GQ:PL    1/1:1,35:36:93.30:1200,93,0
17    26729428    rs4795436    C    T    214.12    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.27;QD=13.38;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SARM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000003834    GT:AD:DP:GQ:PL    0/1:9,7:16:99:244,0,276
17    26732533    .    A    G    258.97    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.796;QD=16.19;ReadPosRankSum=-0.551;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SARM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457710    GT:AD:DP:GQ:PL    0/1:6,10:16:99:289,0,125
17    26794795    rs11654702    A    G    150.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;MQRankSum=-0.201;QD=10.77;ReadPosRankSum=2.98;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393464    GT:AD:DP:GQ:PL    0/1:7,7:14:99:181,0,234
17    26794816    rs56216739    G    A    520.80    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=4.042;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=55.98;MQ0=0;MQRankSum=-0.377;QD=20.03;ReadPosRankSum=-0.808;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393464    GT:AD:DP:GQ:PL    0/1:9,17:26:99:551,0,235
17    26795081    rs11080065    G    A    1681.29    MQFilter40    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DB;DP=149;Dels=0.0;FS=1.464;HRun=0;HaplotypeScore=3.1439;MQ=34.08;MQ0=22;MQRankSum=1.213;QD=11.28;ReadPosRankSum=-1.796;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393464    GT:AD:DP:GQ:PL    0/1:83,66:149:99:1711,0,1663
17    26795115    rs11080066    C    G    1432.73    MQFilter40    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=1.392;DB;DP=149;Dels=0.0;FS=6.919;HRun=1;HaplotypeScore=2.5707;MQ=35.11;MQ0=23;MQRankSum=0.26;QD=9.62;ReadPosRankSum=1.774;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393464    GT:AD:DP:GQ:PL    0/1:89,60:149:99:1463,0,1922
17    26795156    rs12449751    G    A    1708.62    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=4.264;DB;DP=160;Dels=0.0;FS=3.002;HRun=5;HaplotypeScore=0.9916;MQ=45.98;MQ0=12;MQRankSum=0.612;QD=10.68;ReadPosRankSum=-0.717;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393464    GT:AD:DP:GQ:PL    0/1:89,71:160:99:1739,0,2238
17    26795313    rs7501666    G    T    1729.17    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.375;DB;DP=132;Dels=0.0;FS=0.709;HRun=3;HaplotypeScore=1.8255;MQ=53.37;MQ0=0;MQRankSum=1.526;QD=13.1;ReadPosRankSum=0.136;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314669    GT:AD:DP:GQ:PL    0/1:68,64:132:99:1759,0,2046
17    26795460    rs34363695    TA    T    148.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.674;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=56.7954;IndelType=D;MQ=55.58;MQ0=0;MQRankSum=-0.306;QD=7.41;ReadPosRankSum=-0.919;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314669    GT:AD:DP:GQ:PL    0/1:10,10:20:99:187,0,107
17    26818676    rs9890678    T    C    856.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314669    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:890,66,0
17    26850929    rs483434    A    C    258.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=25.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226247    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:292,24,0
17    26851501    rs614434    G    A    1010.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226247    GT:AD:DP:GQ:PL    1/1:0,30:31:78.24:1043,78,0
17    26855971    rs634065    T    G    54.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=6.83;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226247    GT:AD:DP:GQ:PL    0/1:5,3:8:84.62:85,0,178
17    26855980    rs634061    G    A    66.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.36;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226247    GT:AD:DP:GQ:PL    0/1:5,3:8:96.91:97,0,162
17    26856261    rs548973    A    G    632.19    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=47;Dels=0.0;FS=4.88;HRun=3;HaplotypeScore=0.5784;MQ=58.49;MQ0=0;MQRankSum=-0.088;QD=13.45;ReadPosRankSum=-0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226247    GT:AD:DP:GQ:PL    0/1:22,25:47:99:662,0,564
17    26861171    rs667026    G    C    32.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226247    GT:AD:DP:GQ:PL    0/1:3,2:5:62.85:63,0,89
17    26861605    .    C    CA    74.02    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DP=13;FS=0.0;HRun=14;HaplotypeScore=132.1035;IndelType=I;MQ=51.66;MQ0=0;MQRankSum=0.067;QD=5.69;ReadPosRankSum=-1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226247    GT:AD:DP:GQ:PL    0/1:6,5:13:13.76:113,0,14
17    26864302    rs532648    G    C    644.13    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.634;DB;DP=51;Dels=0.0;FS=4.676;HRun=4;HaplotypeScore=0.9894;MQ=59.55;MQ0=0;MQRankSum=-0.11;QD=12.63;ReadPosRankSum=-0.09;SNPEFF_AMINO_ACID_CHANGE=A599P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_26864135_26865914;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000226247    GT:AD:DP:GQ:PL    0/1:28,23:51:99:674,0,851
17    26911529    rs71372388    C    A    2709.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5274;MQ=60.0;MQ0=0;MQRankSum=1.588;QD=36.62;ReadPosRankSum=0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005726.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378976    GT:AD:DP:GQ:PL    1/1:1,71:74:99:2743,174,0
17    26989076    rs190147576    C    G    165.50    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=23.64;ReadPosRankSum=0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480857    GT:AD:DP:GQ:PL    0/1:1,6:7:18.97:195,0,19
17    27000391    rs9904043    A    G    613.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_27000389_27000528;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT6H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314616    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:647,48,0
17    27002402    rs9892089    A    G    1428.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT6H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314616    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1462,117,0
17    27004703    rs7207976    C    A    4451.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=59.31;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT6H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314616    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4452,325,0
17    27053568    rs12952249    G    A    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394935    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    27075423    rs2070265    C    T    890.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.62;SNPEFF_AMINO_ACID_CHANGE=F202;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27075280_27075441;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRAF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262395    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:923,69,0
17    27085564    rs2043031    A    G    2234.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.41;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=L471;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27082996_27086894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341217    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2268,177,0
17    27093542    rs9900141    G    A    308.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=22.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341217    GT:AD:DP:GQ:PL    1/1:0,14:14:27.08:341,27,0
17    27207453    rs1060247    G    A    408.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465427    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:442,33,0
17    27212747    rs41280134    G    T    183.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.447;QD=18.37;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLOT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394906    GT:AD:DP:GQ:PL    0/1:4,6:10:99:214,0,132
17    27225937    rs4795473    C    T    116.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378895    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:149,12,0
17    27228198    rs4795474    G    A    1863.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.25;MQ0=0;MQRankSum=-0.894;QD=30.06;ReadPosRankSum=1.565;SNPEFF_AMINO_ACID_CHANGE=R114;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27228008_27228319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394901    GT:AD:DP:GQ:PL    1/1:1,61:62:99:1896,118,0
17    27239376    rs4795475    G    C    173.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332830    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
17    27244473    rs8066347    G    A    1108.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.149;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.644;QD=31.67;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268756    GT:AD:DP:GQ:PL    1/1:1,34:35:55.07:1142,55,0
17    27246368    rs68042462    CCTCCCCTCCTTGATCCTAACATT    C    676.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=210.6432;IndelType=D;MQ=48.34;MQ0=0;QD=61.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483934    GT:AD:DP:GQ:PL    1/1:5,6:11:18.06:718,18,0
17    27254179    rs17794574    C    T    282.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268756    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
17    27284443    rs12941884    A    G    2536.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=28.5;SNPEFF_AMINO_ACID_CHANGE=M681T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27284366_27284557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317338    GT:AD:DP:GQ:PL    1/1:0,88:89:99:2570,196,0
17    27284566    rs67322066    AG    A    638.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=5;HaplotypeScore=64.5758;IndelType=D;MQ=59.44;MQ0=0;QD=29.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317338    GT:AD:DP:GQ:PL    1/1:1,21:22:60.17:681,60,0
17    27286662    rs2277664    C    G    1019.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317338    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1053,78,0
17    27286851    rs1976165    T    C    158.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=2.383;QD=15.85;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=T421A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27286716_27286910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317338    GT:AD:DP:GQ:PL    0/1:4,6:10:99:189,0,132
17    27290969    rs11450637    T    TG    882.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=3;HaplotypeScore=44.0237;IndelType=I;MQ=59.59;MQ0=0;QD=40.13;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_27290965_27291165;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000541381    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:925,66,0
17    27412805    rs7209661    T    G    167.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.398;QD=13.93;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529889    GT:AD:DP:GQ:PL    0/1:4,8:12:99:197,0,125
17    27413403    rs8080570    T    C    134.84    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=10.37;ReadPosRankSum=-1.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529889    GT:AD:DP:GQ:PL    0/1:8,5:13:99:165,0,254
17    27413908    rs4795495    C    G    314.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531370    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:348,27,0
17    27416860    rs4965416    T    C    210.98    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.678;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.208;QD=12.41;ReadPosRankSum=1.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530557    GT:AD:DP:GQ:PL    0/1:8,9:17:99:241,0,246
17    27418106    rs4965417    C    T    74.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.84;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_27418057_27418537;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408971    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
17    27419695    rs12602934    G    A    143.57    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527686    GT:AD:DP:GQ:PL    0/1:1,5:6:12.54:173,0,13
17    27420304    rs12603438    G    C    129.03    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=18;Dels=0.0;FS=4.15;HRun=0;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;MQRankSum=0.177;QD=7.17;ReadPosRankSum=-0.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527686    GT:AD:DP:GQ:PL    0/1:7,11:18:99:159,0,130
17    27421490    rs9890030    C    T    138.57    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=12.6;ReadPosRankSum=2.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527686    GT:AD:DP:GQ:PL    0/1:5,6:11:99:169,0,174
17    27421601    rs71369699    G    A    1000.59    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=4.003;DB;DP=69;Dels=0.0;FS=1.422;HRun=1;HaplotypeScore=1.6281;MQ=59.67;MQ0=0;MQRankSum=1.545;QD=14.5;ReadPosRankSum=-1.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527686    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1031,0,864
17    27421911    rs2019988    T    G    671.92    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.267;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.73;MQ0=0;MQRankSum=0.675;QD=9.88;ReadPosRankSum=0.397;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527686    GT:AD:DP:GQ:PL    0/1:38,30:68:99:702,0,1254
17    27422053    rs2320786    C    T    70.20    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.03;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=A1082;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27421954_27422077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458428    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,122
17    27425793    rs12450936    A    G    316.88    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.11;MQ0=0;MQRankSum=0.688;QD=15.09;ReadPosRankSum=1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354329    GT:AD:DP:GQ:PL    0/1:8,13:21:99:347,0,201
17    27426153    rs12453624    G    A    39.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.736;QD=9.89;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354329    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:70,0,33
17    27434393    rs2279956    T    C    140.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533399    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:174,15,0
17    27437134    rs2279958    A    G    1146.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.4;QD=28.67;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533399    GT:AD:DP:GQ:PL    1/1:1,39:40:53.63:1180,54,0
17    27437208    rs2279959    A    G    807.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.16;MQ0=0;QD=35.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533399    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:841,66,0
17    27437710    rs1994663    C    G    141.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=17.67;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533399    GT:AD:DP:GQ:PL    0/1:3,5:8:97.78:171,0,98
17    27438469    rs8076604    G    A    96.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=10.71;ReadPosRankSum=-0.573;SNPEFF_AMINO_ACID_CHANGE=A570V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27438442_27438601;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458428    GT:AD:DP:GQ:PL    0/1:3,6:9:99:126,0,104
17    27441077    rs12601535    C    G    492.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=24.62;SNPEFF_AMINO_ACID_CHANGE=P462;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27441029_27441115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458428    GT:AD:DP:GQ:PL    1/1:0,20:20:42.10:525,42,0
17    27442561    rs12936218    A    G    215.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354329    GT:AD:DP:GQ:PL    1/1:0,9:9:21.03:249,21,0
17    27442710    rs28587908    G    C    128.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.71;SNPEFF_AMINO_ACID_CHANGE=P345;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27442682_27442858;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458428    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:161,15,0
17    27443252    rs12945223    A    G    115.18    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000531686    GT:AD:DP:GQ:PL    0/1:1,5:6:23.72:145,0,24
17    27446158    rs16964821    T    C    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528322    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    27449059    rs877492    C    A    559.44    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.409;DB;DP=42;Dels=0.0;FS=6.644;HRun=0;HaplotypeScore=0.0;MQ=55.45;MQ0=0;MQRankSum=-0.437;QD=13.32;ReadPosRankSum=-0.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354329    GT:AD:DP:GQ:PL    0/1:20,22:42:99:589,0,607
17    27492869    rs6505113    A    G    130.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354329    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
17    27530413    rs12943783    T    C    1240.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=58.83;MQ0=0;QD=35.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC005412.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318495    GT:AD:DP:GQ:PL    1/1:0,35:35:93.31:1273,93,0
17    27530666    rs28419601    C    T    2473.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.38;MQ0=0;QD=33.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC005412.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318495    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2507,193,0
17    27580756    rs1047790    C    T    791.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.8253;MQ=58.27;MQ0=0;MQRankSum=-0.093;QD=14.13;ReadPosRankSum=0.513;SNPEFF_AMINO_ACID_CHANGE=G152;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27580658_27580800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225387    GT:AD:DP:GQ:PL    0/1:28,28:56:99:821,0,809
17    27594333    rs708101    C    A    31.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225388    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
17    27594687    rs34178472    A    C    74.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=8.25;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225388    GT:AD:DP:GQ:PL    0/1:5,4:9:99:104,0,176
17    27614758    rs34613266    TA    T    160.21    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DB;DP=18;FS=0.0;HRun=11;HaplotypeScore=59.4685;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=-0.919;QD=8.9;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225388    GT:AD:DP:GQ:PL    0/1:7,11:18:99:199,0,113
17    27614837    rs797960    T    G    71.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.95;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUFIP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225388    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,102
17    27778834    rs4795510    G    A    107.98    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=15.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261716    GT:AD:DP:GQ:PL    0/1:3,4:7:90.48:138,0,90
17    27819051    rs2681179    T    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261716    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
17    27835138    rs508706    C    T    823.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_AMINO_ACID_CHANGE=A521;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27834914_27835150;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261716    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:857,63,0
17    27857698    rs536327    C    T    360.44    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.589;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.391;QD=17.16;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261716    GT:AD:DP:GQ:PL    0/1:9,12:21:99:390,0,260
17    27869968    rs507577    G    A    140.56    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=12;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=11.71;ReadPosRankSum=0.831;SNPEFF_AMINO_ACID_CHANGE=T830;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27869579_27871358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAOK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536202    GT:AD:DP:GQ:PL    0/1:5,7:12:99:171,0,174
17    27889578    rs539307    T    C    1284.03    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=79;Dels=0.0;FS=3.145;HRun=0;HaplotypeScore=5.6479;MQ=59.42;MQ0=0;MQRankSum=0.332;QD=16.25;ReadPosRankSum=1.3;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307201    GT:AD:DP:GQ:PL    0/1:30,48:79:99:1314,0,835
17    27889963    rs721479    C    G    242.56    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.131;DB;DP=28;Dels=0.0;FS=9.412;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=8.66;ReadPosRankSum=0.689;SNPEFF_AMINO_ACID_CHANGE=P341;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27887691_27890104;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307201    GT:AD:DP:GQ:PL    0/1:19,9:28:99:273,0,583
17    27889986    rs542939    T    C    978.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_AMINO_ACID_CHANGE=T334A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27887691_27890104;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307201    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1012,75,0
17    27893015    rs2292973    G    A    333.69    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=27.81;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307201    GT:AD:DP:GQ:PL    0/1:1,11:12:7.54:363,0,8
17    27898828    rs565977    T    C    2779.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225394    GT:AD:DP:GQ:PL    1/1:0,82:83:99:2813,217,0
17    27901975    rs550818    A    G    178.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491377    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:211,18,0
17    27904322    rs601364    A    G    1229.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53I13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301057    GT:AD:DP:GQ:PL    1/1:0,33:33:96.31:1262,96,0
17    27904617    rs2278217    C    A    126.12    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=0.907;DB;DP=31;Dels=0.0;FS=9.96;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=4.07;ReadPosRankSum=0.596;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53I13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301057    GT:AD:DP:GQ:PL    0/1:24,7:31:99:156,0,774
17    27904711    rs11080105    G    A    442.27    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=46;Dels=0.0;FS=11.484;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.275;QD=9.61;ReadPosRankSum=-0.704;SNPEFF_AMINO_ACID_CHANGE=A311;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27904663_27904760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225394    GT:AD:DP:GQ:PL    0/1:28,18:46:99:472,0,833
17    27905673    rs563976    A    G    2020.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=59.2;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225394    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2054,162,0
17    27908330    .    G    C    361.14    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DP=28;Dels=0.0;FS=1.69;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=12.9;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225394    GT:AD:DP:GQ:PL    0/1:13,15:28:99:391,0,395
17    27910706    rs2303623    C    T    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225394    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    27935688    rs7220401    T    C    76.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.02;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394859    GT:AD:DP:GQ:PL    0/1:1,3:4:15.63:106,0,16
17    27944089    rs11657079    C    T    1028.48    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=83;Dels=0.0;FS=3.213;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-1.098;QD=12.39;ReadPosRankSum=1.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD13B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394859    GT:AD:DP:GQ:PL    0/1:47,36:83:99:1058,0,1286
17    27959903    rs2289629    G    A    504.25    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=33;Dels=0.0;FS=5.792;HRun=1;HaplotypeScore=0.5784;MQ=58.59;MQ0=0;MQRankSum=-1.576;QD=15.28;ReadPosRankSum=-0.665;SNPEFF_AMINO_ACID_CHANGE=S743L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_27952956_27959949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269033    GT:AD:DP:GQ:PL    0/1:15,18:33:99:534,0,384
17    28029938    rs3102560    T    C    904.26    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.169;DB;DP=57;Dels=0.0;FS=4.293;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.249;QD=15.86;ReadPosRankSum=0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269033    GT:AD:DP:GQ:PL    0/1:25,32:57:99:934,0,840
17    28030267    rs3115087    G    C    40.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269033    GT:AD:DP:GQ:PL    0/1:2,2:4:61.74:70,0,62
17    28120851    rs2617882    A    C    379.34    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=30;Dels=0.0;FS=3.08;HRun=1;HaplotypeScore=0.0;MQ=55.25;MQ0=1;MQRankSum=-0.859;QD=12.64;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269033    GT:AD:DP:GQ:PL    0/1:13,17:30:99:409,0,409
17    28268800    rs4567782    A    C    861.53    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.514;DB;DP=55;Dels=0.0;FS=21.825;HRun=1;HaplotypeScore=0.8941;MQ=59.58;MQ0=0;MQRankSum=-0.357;QD=15.66;ReadPosRankSum=0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421238    GT:AD:DP:GQ:PL    0/1:24,31:55:99:892,0,739
17    28296327    rs9897794    T    G    1059.91    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=88;Dels=0.0;FS=4.03;HRun=2;HaplotypeScore=0.734;MQ=59.53;MQ0=0;MQRankSum=-0.278;QD=12.04;ReadPosRankSum=0.659;SNPEFF_AMINO_ACID_CHANGE=L181V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_28295809_28296385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423598    GT:AD:DP:GQ:PL    0/1:47,41:88:99:1090,0,1458
17    28320248    rs4795524    T    A    3547.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=I19K;SNPEFF_CODON_CHANGE=aTa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_28320183_28320339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534836    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3548,265,0
17    28320473    rs12150261    G    T    257.85    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.122;QD=13.57;ReadPosRankSum=1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:10,9:19:99:288,0,359
17    28323499    rs12944395    A    G    181.15    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.634;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=10.66;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:10,7:17:99:211,0,366
17    28378276    rs11653805    C    T    559.51    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=3.393;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=18.05;ReadPosRankSum=-0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:12,19:31:99:590,0,287
17    28381141    rs4074170    C    G    566.34    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.789;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.578;QD=16.18;ReadPosRankSum=0.116;SNPEFF_AMINO_ACID_CHANGE=T380;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_28380273_28381166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541045    GT:AD:DP:GQ:PL    0/1:17,18:35:99:596,0,567
17    28382704    rs9890205    C    T    82.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.67;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:113,0,29
17    28386526    rs4075623    A    G    959.13    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.301;DB;DP=85;Dels=0.0;FS=3.873;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.28;ReadPosRankSum=-0.187;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534836    GT:AD:DP:GQ:PL    0/1:50,35:85:99:989,0,1564
17    28407287    rs11080114    C    T    1237.22    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=94;Dels=0.0;FS=2.344;HRun=3;HaplotypeScore=3.3471;MQ=59.31;MQ0=0;MQRankSum=-0.875;QD=13.16;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:48,46:94:99:1267,0,1329
17    28407876    rs7221743    T    G    1499.32    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.901;DB;DP=129;Dels=0.0;FS=6.873;HRun=2;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=-0.478;QD=11.62;ReadPosRankSum=-1.017;SNPEFF_AMINO_ACID_CHANGE=G1101;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_28407771_28407999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394835    GT:AD:DP:GQ:PL    0/1:73,56:129:99:1529,0,2351
17    28408070    rs11080115    C    T    451.38    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.849;DB;DP=48;Dels=0.0;FS=4.732;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.697;QD=9.4;ReadPosRankSum=-1.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:31,17:48:99:481,0,1104
17    28408217    rs12103671    C    T    72.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.58;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:103,0,69
17    28410124    rs12941382    T    C    179.26    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.231;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.394;QD=6.4;ReadPosRankSum=0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:19,9:28:99:209,0,675
17    28410277    rs12951836    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    28417376    rs8065059    T    C    589.07    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.766;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.636;QD=11.55;ReadPosRankSum=1.828;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:30,21:51:99:619,0,1012
17    28434826    rs5819880    ACTTTT    A    1009.52    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=3.359;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=229.5884;IndelType=D;MQ=56.65;MQ0=0;MQRankSum=-1.035;QD=25.89;ReadPosRankSum=0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320856    GT:AD:DP:GQ:PL    0/1:21,18:39:99:1049,0,1240
17    28444183    rs6505162    A    C    47.31    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=6.76;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247026    GT:AD:DP:GQ:PL    0/1:4,3:7:77.30:77,0,118
17    28505024    rs7221154    G    A    463.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.981;DB;DP=40;Dels=0.0;FS=4.664;HRun=5;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.166;QD=11.58;ReadPosRankSum=0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247026    GT:AD:DP:GQ:PL    0/1:20,20:40:99:493,0,670
17    28505174    rs11544945    A    C    767.15    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.553;DB;DP=63;Dels=0.0;FS=5.835;HRun=0;HaplotypeScore=3.5711;MQ=58.97;MQ0=0;MQRankSum=0.542;QD=12.18;ReadPosRankSum=2.029;SNPEFF_AMINO_ACID_CHANGE=K17T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_28505173_28505217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSRP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540900    GT:AD:DP:GQ:PL    0/1:29,32:63:99:797,0,918
17    28511978    rs1979572    G    A    836.88    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=60;Dels=0.0;FS=3.724;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.023;QD=13.95;ReadPosRankSum=-0.568;SNPEFF_AMINO_ACID_CHANGE=Q252;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_28511633_28512865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540900    GT:AD:DP:GQ:PL    0/1:28,32:60:99:867,0,863
17    28538532    rs140701    C    T    147.69    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.44;MQ0=0;MQRankSum=0.387;QD=13.43;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261707    GT:AD:DP:GQ:PL    0/1:5,6:11:99:178,0,128
17    28549898    rs6354    G    T    1179.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401766    GT:AD:DP:GQ:PL    1/1:0,38:38:93.25:1212,93,0
17    28549978    rs25528    G    T    566.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261707    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:600,45,0
17    28765935    .    A    AT    262.29    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DP=25;FS=3.222;HRun=9;HaplotypeScore=98.0122;IndelType=I;MQ=59.02;MQ0=0;MQRankSum=1.373;QD=10.49;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225719    GT:AD:DP:GQ:PL    0/1:13,12:25:99:301,0,197
17    28771097    rs1057993    G    A    697.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225719    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:731,54,0
17    28773092    .    A    AT    523.71    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DP=28;FS=3.522;HRun=2;HaplotypeScore=108.2095;IndelType=I;MQ=58.29;MQ0=0;MQRankSum=0.464;QD=18.7;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225719    GT:AD:DP:GQ:PL    0/1:13,15:28:99:563,0,365
17    28778720    rs2253256    G    C    1482.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225719    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1516,111,0
17    28811553    rs5819900    TTTTTG    T    290.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=37.7917;IndelType=D;MQ=51.77;MQ0=0;QD=48.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467635    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:332,18,0
17    28811658    rs34359648    G    GT    715.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=26;FS=0.0;HRun=10;HaplotypeScore=66.6587;IndelType=I;MQ=60.42;MQ0=0;MQRankSum=0.667;QD=27.52;ReadPosRankSum=-0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467635    GT:AD:DP:GQ:PL    1/1:1,24:26:53.39:758,53,0
17    28849397    .    T    C    2250.06    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.809;DP=173;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2848;MQ=59.47;MQ0=0;MQRankSum=0.304;QD=13.01;ReadPosRankSum=-1.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427274    GT:AD:DP:GQ:PL    0/1:82,90:173:99:2280,0,2558
17    28890203    rs216455    T    C    238.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329040    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:271,21,0
17    28896442    rs190053    A    G    270.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.07;MQ0=1;QD=27.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006050.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436477    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:303,24,0
17    28900708    rs3764416    G    T    249.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.69;SNPEFF_AMINO_ACID_CHANGE=P124;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_28900489_28900795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006050.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436477    GT:AD:DP:GQ:PL    1/1:1,10:11:24.06:283,24,0
17    29096006    rs62070634    C    T    403.08    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.783;DB;DP=28;Dels=0.0;FS=6.262;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-1.382;QD=14.4;ReadPosRankSum=-0.507;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=SUZ12P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499895    GT:AD:DP:GQ:PL    0/1:13,15:28:99:433,0,430
17    29111368    rs11867457    A    G    632.15    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=0.686;DB;DP=50;Dels=0.0;FS=4.181;HRun=1;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;MQRankSum=-0.416;QD=12.64;ReadPosRankSum=-0.79;SNPEFF_AMINO_ACID_CHANGE=L273P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_29110954_29111461;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544695    GT:AD:DP:GQ:PL    0/1:29,21:50:99:662,0,872
17    29162212    rs78909753    T    G    1051.57    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.404;QD=15.93;ReadPosRankSum=-0.822;SNPEFF_AMINO_ACID_CHANGE=V371;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_29161166_29163066;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321990    GT:AD:DP:GQ:PL    0/1:27,39:66:99:1082,0,854
17    29221227    rs9898911    A    T    501.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=35.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306049    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:534,42,0
17    29221277    rs62070652    C    T    192.32    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=27.47;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306049    GT:AD:DP:GQ:PL    0/1:1,6:7:21.58:222,0,22
17    29226630    rs28539246    T    A    389.23    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.174;DB;DP=52;Dels=0.0;FS=11.516;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.01;QD=7.49;ReadPosRankSum=0.743;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321990    GT:AD:DP:GQ:PL    0/1:32,20:52:99:419,0,1066
17    29226652    rs9897628    A    G    450.98    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.913;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.78;QD=12.53;ReadPosRankSum=-1.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATAD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321990    GT:AD:DP:GQ:PL    0/1:20,16:36:99:481,0,696
17    29482878    rs2269855    G    A    178.29    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=13.71;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:6,7:13:99:208,0,215
17    29486152    rs2952976    G    A    650.27    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.463;DB;DP=38;Dels=0.0;FS=1.696;HRun=1;HaplotypeScore=1.9828;MQ=59.39;MQ0=0;MQRankSum=-0.03;QD=17.11;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:15,23:38:99:680,0,450
17    29496819    rs2905807    C    T    213.98    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.45;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:4,7:11:99:244,0,131
17    29508775    rs1801052    G    A    955.30    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.112;DB;DP=87;Dels=0.0;FS=1.992;HRun=0;HaplotypeScore=1.7825;MQ=53.21;MQ0=0;MQRankSum=0.504;QD=10.98;ReadPosRankSum=0.331;SNPEFF_AMINO_ACID_CHANGE=L234;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_29508728_29508803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:47,40:87:99:985,0,1101
17    29508819    rs71142032    A    AT    274.14    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=60;FS=5.516;HRun=16;HaplotypeScore=549.3487;IndelType=I;MQ=50.53;MQ0=0;MQRankSum=-1.856;QD=4.57;ReadPosRankSum=-3.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:36,15:60:13.75:313,0,14
17    29509791    rs2953000    C    T    102.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=12.8;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,140
17    29509801    rs2952999    G    T    101.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=12.64;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,143
17    29541339    rs2905875    A    T    73.53    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.354;QD=5.25;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:10,4:14:99:104,0,351
17    29541437    rs2905876    T    C    595.21    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.429;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.5;MQ0=0;MQRankSum=-1.808;QD=11.23;ReadPosRankSum=0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:29,23:53:99:625,0,984
17    29545987    rs67472948    A    AT    292.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.283;DB;DP=22;FS=0.0;HRun=7;HaplotypeScore=46.1034;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=-0.066;QD=13.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:11,11:22:99:331,0,253
17    29546175    rs2905880    T    C    211.58    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=17.63;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:5,7:12:99:242,0,174
17    29553485    rs2285892    G    A    439.23    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.889;DB;DP=40;Dels=0.0;FS=1.512;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.503;QD=10.98;ReadPosRankSum=-0.802;SNPEFF_AMINO_ACID_CHANGE=P344;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_29553453_29553702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456735    GT:AD:DP:GQ:PL    0/1:22,18:40:99:469,0,634
17    29557953    .    G    A    92.33    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DP=13;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=48.22;MQ0=0;MQRankSum=-2.927;QD=7.1;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:8,5:13:99:122,0,223
17    29559932    rs2066736    C    A    524.84    PASS    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.526;DB;DP=27;Dels=0.0;FS=4.075;HRun=4;HaplotypeScore=0.8321;MQ=59.14;MQ0=0;MQRankSum=1.245;QD=19.44;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:7,20:27:99:555,0,185
17    29563076    rs59745739    T    TG    349.24    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.738;DB;DP=24;FS=3.388;HRun=1;HaplotypeScore=130.0011;IndelType=I;MQ=58.05;MQ0=0;MQRankSum=-0.348;QD=14.55;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:15,9:24:99:388,0,321
17    29563085    rs56874702    T    TG    250.84    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=2.862;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=130.9298;IndelType=I;MQ=57.97;MQ0=0;MQRankSum=0.092;QD=10.91;ReadPosRankSum=2.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:14,9:23:99:290,0,356
17    29646032    rs1129506    G    A    1553.03    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.523;DB;DP=110;Dels=0.0;FS=0.738;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=0.846;QD=14.12;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=S23;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_29644578_29646041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247270    GT:AD:DP:GQ:PL    0/1:53,57:110:99:1583,0,1666
17    29647358    rs3837848    A    AT    296.64    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=19;FS=0.0;HRun=4;HaplotypeScore=185.6396;IndelType=I;MQ=53.23;MQ0=0;MQRankSum=1.156;QD=15.61;ReadPosRankSum=-0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247270    GT:AD:DP:GQ:PL    0/1:10,9:19:99:336,0,145
17    29653237    rs17887014    G    A    614.37    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.247;DB;DP=47;Dels=0.0;FS=1.121;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=0.458;QD=13.07;ReadPosRankSum=2.057;SNPEFF_AMINO_ACID_CHANGE=K1390;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_29652838_29653270;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456735    GT:AD:DP:GQ:PL    0/1:25,22:47:99:644,0,651
17    29653293    rs9894648    T    C    382.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=36;Dels=0.0;FS=1.672;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.931;QD=10.64;ReadPosRankSum=-0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:21,15:36:99:413,0,603
17    29654876    rs2285894    T    A    429.16    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.443;DB;DP=27;Dels=0.0;FS=10.243;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=15.89;ReadPosRankSum=-0.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:11,16:27:99:459,0,311
17    29663172    rs10853138    A    C    70.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493220    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
17    29670190    rs7405740    C    G    784.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:817,60,0
17    29672761    .    C    T    130.37    MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=0.234;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.48;MQ0=9;MQRankSum=0.422;QD=2.17;ReadPosRankSum=0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:46,14:60:99:160,0,829
17    29673099    .    G    A    524.84    MQFilter40    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=3.037;DP=90;Dels=0.0;FS=0.947;HRun=1;HaplotypeScore=1.4105;MQ=27.34;MQ0=11;MQRankSum=-0.208;QD=5.83;ReadPosRankSum=0.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:59,31:90:99:555,0,1156
17    29673127    .    G    A    243.31    MQFilter40    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=3.687;DP=86;Dels=0.0;FS=4.525;HRun=0;HaplotypeScore=0.7887;MQ=22.83;MQ0=19;MQRankSum=0.646;QD=2.83;ReadPosRankSum=-3.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:57,29:86:99:273,0,722
17    29673219    .    T    A    656.76    MQFilter40    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=4.812;DP=99;Dels=0.0;FS=1.078;HRun=2;HaplotypeScore=0.9469;MQ=24.51;MQ0=16;MQRankSum=0.041;QD=6.63;ReadPosRankSum=0.983;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:60,39:99:99:687,0,800
17    29679246    rs964288    G    A    403.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.142;DB;DP=25;Dels=0.0;FS=7.166;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.615;QD=16.13;ReadPosRankSum=0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356175    GT:AD:DP:GQ:PL    0/1:10,15:25:99:433,0,313
17    29849479    rs60594701    C    T    996.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325874    GT:AD:DP:GQ:PL    1/1:0,28:28:78.25:1029,78,0
17    29849492    rs113868347    C    T    742.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325874    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:775,57,0
17    29851024    rs73988086    G    T    437.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325874    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:471,36,0
17    29852092    rs2023795    A    G    45.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11FIP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325874    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    30183663    rs74864186    G    GC    854.16    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.097;DB;DP=49;FS=0.0;HRun=1;HaplotypeScore=112.712;IndelType=I;MQ=59.05;MQ0=0;MQRankSum=-1.798;QD=17.43;ReadPosRankSum=-0.841;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261708    GT:AD:DP:GQ:PL    0/1:27,22:49:99:893,0,794
17    30183857    rs8068049    T    C    3001.83    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.72;DB;DP=210;DS;Dels=0.0;FS=7.831;HRun=1;HaplotypeScore=3.551;MQ=59.67;MQ0=0;MQRankSum=0.549;QD=14.29;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=S31G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_30183818_30183884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf79;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378634    GT:AD:DP:GQ:PL    0/1:93,117:210:99:3032,0,2823
17    30185892    rs11542477    A    G    107.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261708    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:140,12,0
17    30192249    rs9906822    C    T    40.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.38;MQ0=0;MQRankSum=-1.537;QD=6.76;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261708    GT:AD:DP:GQ:PL    0/1:3,3:6:70.55:71,0,104
17    30219569    rs1034627    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261708    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    30222002    rs3760454    T    C    254.60    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=18.19;ReadPosRankSum=1.6;SNPEFF_AMINO_ACID_CHANGE=Q69R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_30221989_30222030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261708    GT:AD:DP:GQ:PL    0/1:5,9:14:99:285,0,136
17    30228656    rs2074101    G    A    713.58    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=0.77;DB;DP=49;Dels=0.0;FS=3.794;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.79;QD=14.56;ReadPosRankSum=0.79;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490218    GT:AD:DP:GQ:PL    0/1:24,25:49:99:744,0,791
17    30293149    rs72379756    C    CT    99.02    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=29;FS=6.726;HRun=14;HaplotypeScore=156.9277;IndelType=I;MQ=58.88;MQ0=0;MQRankSum=1.799;QD=3.41;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUZ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322652    GT:AD:DP:GQ:PL    0/1:14,13:29:99:138,0,113
17    30302411    rs548957    G    A    120.44    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.09;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUZ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322652    GT:AD:DP:GQ:PL    0/1:1,4:5:19.30:150,0,19
17    30303480    rs147986570    TATATC    T    439.64    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=77.8501;IndelType=D;MQ=45.16;MQ0=0;MQRankSum=-0.978;QD=33.82;ReadPosRankSum=0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUZ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322652    GT:AD:DP:GQ:PL    0/1:4,9:12:99:479,0,224
17    30315287    rs530209    A    G    463.62    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.416;DB;DP=28;Dels=0.0;FS=2.049;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.441;QD=16.56;ReadPosRankSum=-1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUZ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322652    GT:AD:DP:GQ:PL    0/1:12,16:28:99:494,0,331
17    30320860    rs55811201    C    CT    440.67    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=56;FS=0.0;HRun=11;HaplotypeScore=185.8277;IndelType=I;MQ=59.17;MQ0=0;MQRankSum=0.354;QD=7.87;ReadPosRankSum=-0.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUZ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322652    GT:AD:DP:GQ:PL    0/1:38,17:56:99:480,0,507
17    30321567    rs1557731    T    G    168.75    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.101;QD=12.98;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUZ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322652    GT:AD:DP:GQ:PL    0/1:6,7:13:99:199,0,160
17    30321762    rs473356    G    C    656.08    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7306;MQ=58.89;MQ0=0;MQRankSum=-1.739;QD=15.62;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUZ12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322652    GT:AD:DP:GQ:PL    0/1:19,22:42:99:686,0,588
17    30358510    .    G    A    125.49    MQFilter40    AC=2;AF=1.00;AN=2;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.86;MQ0=15;QD=4.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327564    GT:AD:DP:GQ:PL    1/1:0,27:27:15.02:158,15,0
17    30376461    .    G    A    515.79    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.166;DP=76;Dels=0.0;FS=10.713;HRun=0;HaplotypeScore=3.5544;MQ=45.9;MQ0=3;MQRankSum=-5.49;QD=6.79;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327564    GT:AD:DP:GQ:PL    0/1:46,30:76:99:546,0,1329
17    30376932    rs1843083    C    A    312.60    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=57.29;MQ0=0;MQRankSum=0.437;QD=12.02;ReadPosRankSum=-0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327564    GT:AD:DP:GQ:PL    0/1:14,12:26:99:343,0,507
17    30377162    rs16967101    A    G    751.25    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.252;DB;DP=67;Dels=0.0;FS=6.789;HRun=0;HaplotypeScore=0.0;MQ=49.3;MQ0=3;MQRankSum=0.094;QD=11.21;ReadPosRankSum=0.877;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327564    GT:AD:DP:GQ:PL    0/1:38,29:67:99:781,0,1074
17    30380381    rs17182434    A    G    786.70    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.924;DB;DP=46;Dels=0.0;FS=1.977;HRun=0;HaplotypeScore=0.0;MQ=54.67;MQ0=0;MQRankSum=-0.484;QD=17.1;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394713    GT:AD:DP:GQ:PL    0/1:18,28:46:99:817,0,570
17    30415954    rs145600725    A    G    79.04    MQFilter40;QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.59;MQ0=1;MQRankSum=0.35;QD=1.98;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:33,7:40:99:109,0,823
17    30418721    .    TTATC    T    956.82    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=5.024;DP=43;FS=0.0;HRun=0;HaplotypeScore=197.5913;IndelType=D;MQ=36.09;MQ0=5;MQRankSum=-1.07;QD=18.05;ReadPosRankSum=0.441;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:26,27:43:99:996,0,1683
17    30421924    .    T    G    33.74    MQFilter40;QDFilter2    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=0.95;DP=128;Dels=0.0;FS=33.466;HRun=1;HaplotypeScore=0.0;MQ=34.66;MQ0=18;MQRankSum=-0.583;QD=0.26;ReadPosRankSum=2.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:110,18:128:63.74:64,0,2672
17    30470028    rs36118203    G    GC    281.92    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.02;DB;DP=34;FS=3.329;HRun=3;HaplotypeScore=84.4591;IndelType=I;MQ=58.96;MQ0=0;MQRankSum=-0.02;QD=8.29;ReadPosRankSum=-0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC090616.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398832    GT:AD:DP:GQ:PL    0/1:24,10:34:99:321,0,729
17    30477681    rs73989707    C    A    581.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.508;DB;DP=46;Dels=0.0;FS=1.174;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.67;QD=12.65;ReadPosRankSum=-1.782;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    0/1:23,23:46:99:612,0,763
17    30502955    rs8076276    G    A    238.24    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.972;DB;DP=25;Dels=0.0;FS=4.5;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.255;QD=9.53;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    0/1:16,9:25:99:268,0,462
17    30509939    rs6505286    C    G    1097.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1130,87,0
17    30520411    rs72827703    G    C    34.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    0/1:1,2:3:21.57:65,0,22
17    30520958    rs41274290    C    T    1827.58    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.211;DB;DP=104;Dels=0.0;FS=5.682;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.746;QD=17.57;ReadPosRankSum=0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    0/1:43,61:104:99:1858,0,1479
17    30521346    .    A    T    109.29    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=9.94;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    0/1:6,5:11:99:139,0,195
17    30526328    rs10708193    GT    G    206.94    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=15;FS=0.0;HRun=4;HaplotypeScore=38.0493;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=13.8;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    0/1:7,8:15:99:246,0,210
17    30533970    rs16967164    A    G    1155.65    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=65;Dels=0.0;FS=2.397;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.223;QD=17.78;ReadPosRankSum=1.062;SNPEFF_AMINO_ACID_CHANGE=E486;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_30533929_30534048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    0/1:28,37:65:99:1186,0,870
17    30534311    rs2036376    A    G    78.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHOT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333942    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
17    30625205    rs4795690    G    A    421.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=V157M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_30625111_30625223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536287    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:455,33,0
17    30632274    rs16967266    G    A    198.31    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=11.67;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269051    GT:AD:DP:GQ:PL    0/1:8,9:17:99:228,0,229
17    30643011    rs56360040    C    G    42.34    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=57.39;MQ0=0;MQRankSum=-0.876;QD=4.7;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269051    GT:AD:DP:GQ:PL    0/1:5,4:9:72.33:72,0,177
17    30643361    rs2344973    A    G    2452    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269051    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2485,193,0
17    30659006    rs1019152    T    A    2360.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf75;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225805    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2393,190,0
17    30687522    rs6505295    G    C    112.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=14.01;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF207;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321233    GT:AD:DP:GQ:PL    0/1:4,4:8:99:142,0,138
17    30689814    rs9896320    G    A    231.69    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-1.666;QD=25.74;ReadPosRankSum=1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF207;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321233    GT:AD:DP:GQ:PL    0/1:2,7:9:53.56:262,0,54
17    30692396    rs3795244    G    T    478.08    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.758;DB;DP=56;Dels=0.0;FS=5.855;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.375;QD=8.54;ReadPosRankSum=-1.193;SNPEFF_AMINO_ACID_CHANGE=A141S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_30692349_30692506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF207;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341711    GT:AD:DP:GQ:PL    0/1:38,18:56:99:508,0,1168
17    30696292    rs2286645    C    T    556.57    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=36;Dels=0.0;FS=3.627;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.761;QD=15.46;ReadPosRankSum=-1.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF207;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321233    GT:AD:DP:GQ:PL    0/1:17,19:36:99:587,0,572
17    30696296    rs72813018    G    A    604.47    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=36;Dels=0.0;FS=3.627;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.204;QD=16.79;ReadPosRankSum=-2.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF207;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321233    GT:AD:DP:GQ:PL    0/1:17,19:36:99:634,0,498
17    30791503    rs2302276    C    T    145.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.858;DB;DP=25;Dels=0.0;FS=6.021;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.527;QD=5.81;ReadPosRankSum=-1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261712    GT:AD:DP:GQ:PL    0/1:15,10:25:99:175,0,524
17    30822034    rs9889257    C    G    407.21    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=23;Dels=0.0;FS=3.617;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=17.7;ReadPosRankSum=2.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313401    GT:AD:DP:GQ:PL    0/1:10,13:23:99:437,0,287
17    30980972    rs2249638    G    A    275.95    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.164;QD=17.25;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318217    GT:AD:DP:GQ:PL    0/1:7,9:16:99:306,0,209
17    31039255    rs11080184    T    C    790.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.003;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.213;QD=13.62;ReadPosRankSum=-2.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318217    GT:AD:DP:GQ:PL    0/1:29,29:58:99:820,0,1010
17    31048359    rs2302839    T    G    217.02    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-1.635;QD=18.09;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318217    GT:AD:DP:GQ:PL    0/1:5,7:12:99:247,0,170
17    31082747    rs4548927    T    C    107.17    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=15.31;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318217    GT:AD:DP:GQ:PL    0/1:2,5:7:53.18:137,0,53
17    31102744    rs9892827    C    T    34.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.73;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318217    GT:AD:DP:GQ:PL    0/1:4,2:6:64.35:64,0,149
17    31107845    rs10512439    A    G    457.02    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=22;Dels=0.0;FS=4.973;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.128;QD=20.77;ReadPosRankSum=-0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318217    GT:AD:DP:GQ:PL    0/1:7,15:22:99:487,0,181
17    31263239    .    T    TA    515.77    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DP=24;FS=3.132;HRun=0;HaplotypeScore=97.4264;IndelType=I;MQ=58.05;MQ0=0;MQRankSum=1.83;QD=21.49;ReadPosRankSum=0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261713    GT:AD:DP:GQ:PL    0/1:11,13:24:99:555,0,351
17    31266419    rs2726134    T    C    208.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.44;MQ0=0;QD=26.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395149    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:241,21,0
17    31266438    rs3841494    A    AAAGG    607.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=131.1269;IndelType=I;MQ=42.9;MQ0=0;QD=40.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395149    GT:AD:DP:GQ:PL    1/1:3,9:15:33.11:649,33,0
17    31268024    rs28258    A    T    109.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.69;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395149    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,101
17    31318829    rs4999077    C    T    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=7.07;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269053    GT:AD:DP:GQ:PL    0/1:3,3:6:72.42:72,0,75
17    31318933    rs34817428    A    ACTG    463.75    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=22;FS=1.74;HRun=0;HaplotypeScore=83.8908;IndelType=I;MQ=58.95;MQ0=0;MQRankSum=-0.836;QD=21.08;ReadPosRankSum=-0.228;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485015    GT:AD:DP:GQ:PL    0/1:13,9:22:99:503,0,430
17    31319092    rs2188952    T    G    55.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=4;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=11.08;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269053    GT:AD:DP:GQ:PL    0/1:2,3:5:66.51:85,0,67
17    31323728    rs75469748    A    AG    433.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=55.7167;IndelType=I;MQ=61.94;MQ0=0;QD=39.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485015    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:475,33,0
17    31324657    rs28958    T    C    481.99    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.561;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=17.85;ReadPosRankSum=-0.854;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485015    GT:AD:DP:GQ:PL    0/1:12,15:27:99:512,0,399
17    31324673    rs28957    G    A    345.66    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.237;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.9;QD=13.29;ReadPosRankSum=0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPACA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485015    GT:AD:DP:GQ:PL    0/1:14,12:26:99:376,0,446
17    31343175    rs3025251    C    T    69.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.97;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225823    GT:AD:DP:GQ:PL    0/1:2,3:5:58.91:100,0,59
17    31344549    rs2074215    T    C    196.15    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.405;DB;DP=15;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.405;QD=13.08;ReadPosRankSum=2.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225823    GT:AD:DP:GQ:PL    0/1:8,7:15:99:226,0,264
17    31351121    rs16569    A    G    493.55    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.42;DB;DP=31;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=3.0642;MQ=59.25;MQ0=0;MQRankSum=-0.26;QD=15.92;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225823    GT:AD:DP:GQ:PL    0/1:13,18:31:99:524,0,429
17    31355227    rs79815723    A    AG    798.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=3;HaplotypeScore=48.5315;IndelType=I;MQ=61.07;MQ0=0;QD=39.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225823    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:841,60,0
17    31618732    rs9893935    A    G    356.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=27.43;SNPEFF_AMINO_ACID_CHANGE=T134;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_31618426_31620006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225823    GT:AD:DP:GQ:PL    1/1:0,13:13:33.09:390,33,0
17    32364722    rs4795846    T    C    239.08    MQFilter40    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.648;DB;DP=42;Dels=0.0;FS=3.616;HRun=0;HaplotypeScore=0.9933;MQ=39.27;MQ0=9;MQRankSum=-4.881;QD=5.69;ReadPosRankSum=0.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359872    GT:AD:DP:GQ:PL    0/1:17,25:42:99:269,0,583
17    32483237    rs2228990    A    G    503.43    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.449;DB;DP=41;Dels=0.0;FS=2.794;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.122;QD=12.28;ReadPosRankSum=0.748;SNPEFF_AMINO_ACID_CHANGE=N105;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_32482997_32483551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359872    GT:AD:DP:GQ:PL    0/1:22,18:41:99:533,0,769
17    32483270    rs2228989    C    G    389.45    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=33;Dels=0.0;FS=5.884;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.298;QD=11.8;ReadPosRankSum=-1.131;SNPEFF_AMINO_ACID_CHANGE=L94;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_32482997_32483551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACCN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359872    GT:AD:DP:GQ:PL    0/1:18,15:33:99:419,0,514
17    32583132    rs2857657    G    C    722.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225831    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:755,54,0
17    32583269    rs4586    T    C    784.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.265;DB;DP=60;Dels=0.0;FS=5.303;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.842;QD=13.07;ReadPosRankSum=-0.584;SNPEFF_AMINO_ACID_CHANGE=C35;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_32583241_32583358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225831    GT:AD:DP:GQ:PL    0/1:30,30:60:99:814,0,901
17    32684389    rs159313    T    C    582.33    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.37;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7853;MQ=60.0;MQ0=0;MQRankSum=-0.809;QD=16.64;ReadPosRankSum=0.776;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225842    GT:AD:DP:GQ:PL    0/1:17,18:35:99:612,0,584
17    32688712    rs159271    T    C    1653.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225844    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1687,132,0
17    32904480    rs887231    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM132E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321639    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    32904586    rs887230    C    T    553.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=R155K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_32901142_32904639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf102;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357754    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:586,45,0
17    32908064    rs4795938    T    C    159.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf102;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357754    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:193,15,0
17    33269648    rs2230553    C    G    1097.70    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=83;Dels=0.0;FS=1.854;HRun=0;HaplotypeScore=1.7333;MQ=60.0;MQ0=0;MQRankSum=-0.487;QD=13.23;ReadPosRankSum=0.468;SNPEFF_AMINO_ACID_CHANGE=G202A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33269503_33269662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436961    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1128,0,1212
17    33285412    rs1967013    A    G    72.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314144    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
17    33286848    rs4796025    A    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314144    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    33288363    rs9635769    C    T    655.77    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.967;DB;DP=48;Dels=0.0;FS=4.825;HRun=0;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;MQRankSum=-1.331;QD=13.66;ReadPosRankSum=0.353;SNPEFF_AMINO_ACID_CHANGE=R17Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33288276_33288506;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT6B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314144    GT:AD:DP:GQ:PL    0/1:21,25:48:99:686,0,599
17    33288882    rs931196    T    G    2018.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=35.42;SNPEFF_AMINO_ACID_CHANGE=H99Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33288549_33290205;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF830;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361952    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2052,153,0
17    33318312    rs3135983    T    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467697    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    33330150    rs4796030    A    C    99.88    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=9.99;ReadPosRankSum=0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315249    GT:AD:DP:GQ:PL    0/1:6,4:10:99:130,0,197
17    33331575    rs1052536    C    T    191.17    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.058;QD=11.95;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262327    GT:AD:DP:GQ:PL    0/1:9,7:16:99:221,0,274
17    33341834    rs2074519    T    C    582.59    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.33;DB;DP=51;Dels=0.0;FS=1.429;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.316;QD=11.42;ReadPosRankSum=2.364;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413582    GT:AD:DP:GQ:PL    0/1:30,21:51:99:613,0,929
17    33353332    rs3926358    T    C    220.90    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.331;QD=14.73;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447669    GT:AD:DP:GQ:PL    0/1:8,7:15:99:251,0,241
17    33448818    rs1871892    T    C    876.48    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.974;DB;DP=75;Dels=0.0;FS=3.195;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.995;QD=11.69;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=S36P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33448650_33448921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000158009    GT:AD:DP:GQ:PL    0/1:38,37:75:99:906,0,1083
17    33454415    rs2306508    C    A    1339.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=5.125;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.39;MQ0=0;MQRankSum=-0.468;QD=13.53;ReadPosRankSum=-1.432;SNPEFF_AMINO_ACID_CHANGE=T188;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33454061_33454436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FNDC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000158009    GT:AD:DP:GQ:PL    0/1:55,44:99:99:1370,0,1440
17    33463568    rs3736143    C    T    365.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.848;DB;DP=30;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.769;QD=12.19;ReadPosRankSum=-1.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360831    GT:AD:DP:GQ:PL    0/1:16,14:30:99:396,0,478
17    33464864    rs7215209    C    T    377.47    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.487;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.88;QD=9.68;ReadPosRankSum=0.852;SNPEFF_AMINO_ACID_CHANGE=R169K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33464833_33464909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442241    GT:AD:DP:GQ:PL    0/1:24,15:39:99:407,0,666
17    33469279    rs1471615    G    C    151.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.3;SNPEFF_AMINO_ACID_CHANGE=P6A;SNPEFF_CODON_CHANGE=Ccg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33469277_33469322;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442241    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:185,15,0
17    33477242    rs80100968    G    A    211.65    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=32;Dels=0.0;FS=1.657;HRun=2;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=-0.326;QD=6.61;ReadPosRankSum=0.022;SNPEFF_AMINO_ACID_CHANGE=K127;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33477067_33477242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC45B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268876    GT:AD:DP:GQ:PL    0/1:22,10:32:99:242,0,654
17    33497050    rs8066133    C    T    577.34    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.072;DB;DP=49;Dels=0.0;FS=7.075;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.155;QD=11.78;ReadPosRankSum=-1.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC45B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268876    GT:AD:DP:GQ:PL    0/1:25,24:49:99:607,0,740
17    33497331    rs7213921    A    G    33.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=5.53;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC45B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268876    GT:AD:DP:GQ:PL    0/1:3,3:6:63.16:63,0,106
17    33501228    .    C    T    744.62    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DP=55;Dels=0.0;FS=2.418;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.446;QD=13.54;ReadPosRankSum=0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC45B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268876    GT:AD:DP:GQ:PL    0/1:27,28:55:99:775,0,754
17    33502937    rs11657816    G    A    251.90    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.749;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.139;QD=9.69;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC45B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268876    GT:AD:DP:GQ:PL    0/1:15,11:26:99:282,0,499
17    33510323    rs59781678    G    C    115.93    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=14.49;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC45B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268876    GT:AD:DP:GQ:PL    0/1:3,5:8:87.14:146,0,87
17    33520263    rs7208407    T    C    175.93    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9894;MQ=58.43;MQ0=0;MQRankSum=0.529;QD=11.0;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC45B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268876    GT:AD:DP:GQ:PL    0/1:9,7:16:99:206,0,289
17    33586840    rs899940    T    G    145.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=16.14;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299977    GT:AD:DP:GQ:PL    0/1:3,6:9:82.49:175,0,82
17    33591927    rs190252725    G    A    1123.39    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.804;DB;DP=74;Dels=0.0;FS=3.932;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.039;QD=15.18;ReadPosRankSum=-0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299977    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1153,0,1025
17    33591987    rs11080334    T    G    468.21    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2772;MQ=58.9;MQ0=0;MQRankSum=-1.092;QD=12.32;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299977    GT:AD:DP:GQ:PL    0/1:18,20:38:99:498,0,579
17    33592591    rs11651240    C    T    1196.93    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.552;QD=17.6;ReadPosRankSum=-1.244;SNPEFF_AMINO_ACID_CHANGE=P787L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33592091_33594739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299977    GT:AD:DP:GQ:PL    0/1:31,37:68:99:1227,0,888
17    33679204    rs74487502    G    GA    168.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=3;HaplotypeScore=9.0902;IndelType=I;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308377    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
17    33680807    rs9897352    G    A    136.81    MQFilter40    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.22;MQ0=8;MQRankSum=-0.067;QD=8.05;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=T490;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33680355_33681078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308377    GT:AD:DP:GQ:PL    0/1:5,12:17:35.19:167,0,35
17    33680811    rs9898983    C    A    146.54    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.85;MQ0=7;MQRankSum=-1.179;QD=9.16;ReadPosRankSum=0.067;SNPEFF_AMINO_ACID_CHANGE=R489L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33680355_33681078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308377    GT:AD:DP:GQ:PL    0/1:4,12:16:41.87:177,0,42
17    33680840    rs28571667    T    C    692.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.41;MQ0=1;QD=27.71;SNPEFF_AMINO_ACID_CHANGE=Q479;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33680355_33681078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308377    GT:AD:DP:GQ:PL    1/1:0,25:25:66.17:726,66,0
17    33687416    rs938298    C    T    468.12    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=28;Dels=0.0;FS=4.866;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.28;QD=16.72;ReadPosRankSum=0.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427966    GT:AD:DP:GQ:PL    0/1:11,17:28:99:498,0,328
17    33689926    rs4796077    T    C    3359.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4679;MQ=59.01;MQ0=0;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=N301D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33689758_33690845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308377    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3360,262,0
17    33690466    rs12453150    C    A    805.85    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.352;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.586;QD=13.43;ReadPosRankSum=-2.556;SNPEFF_AMINO_ACID_CHANGE=V121F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33689758_33690845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308377    GT:AD:DP:GQ:PL    0/1:32,28:60:99:836,0,979
17    33690863    rs4796078    G    T    980.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=33.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498396    GT:AD:DP:GQ:PL    1/1:0,29:29:78.21:1013,78,0
17    33748837    rs1060885    A    G    82.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428476    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
17    33748939    rs2671817    G    A    1094.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428476    GT:AD:DP:GQ:PL    1/1:0,28:28:84.28:1127,84,0
17    33749546    rs2586514    A    G    1179.58    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.266;DB;DP=81;Dels=0.0;FS=3.058;HRun=3;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=1.199;QD=14.56;ReadPosRankSum=-0.081;SNPEFF_AMINO_ACID_CHANGE=C168R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33749009_33750087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304905    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1210,0,1114
17    33749919    rs1849733    A    C    2286.14    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.712;DB;DP=167;Dels=0.0;FS=4.659;HRun=1;HaplotypeScore=0.8941;MQ=59.64;MQ0=0;MQRankSum=-1.416;QD=13.69;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=S43R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33749009_33750087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304905    GT:AD:DP:GQ:PL    0/1:85,82:167:99:2316,0,2626
17    33768199    rs1822403    G    A    1799.34    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=2.249;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=-0.744;QD=15.65;ReadPosRankSum=-0.342;SNPEFF_AMINO_ACID_CHANGE=D385;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33762115_33768385;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360502    GT:AD:DP:GQ:PL    0/1:56,59:115:99:1829,0,1770
17    33768354    rs3744371    C    T    758.72    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.776;DB;DP=69;Dels=0.0;FS=1.074;HRun=3;HaplotypeScore=0.8941;MQ=55.73;MQ0=0;MQRankSum=-1.662;QD=11.0;ReadPosRankSum=0.517;SNPEFF_AMINO_ACID_CHANGE=E334K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33762115_33768385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360502    GT:AD:DP:GQ:PL    0/1:37,32:69:99:789,0,1095
17    33769034    rs62078110    G    A    538.07    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.388;DB;DP=87;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=2.5594;MQ=30.99;MQ0=13;MQRankSum=-0.368;QD=6.18;ReadPosRankSum=-1.241;SNPEFF_AMINO_ACID_CHANGE=T172;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33768582_33769305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360502    GT:AD:DP:GQ:PL    0/1:49,38:87:99:568,0,883
17    33769038    rs62078111    C    A    606.49    MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.142;DB;DP=84;Dels=0.0;FS=2.089;HRun=0;HaplotypeScore=2.5594;MQ=31.5;MQ0=11;MQRankSum=-0.006;QD=7.22;ReadPosRankSum=-1.358;SNPEFF_AMINO_ACID_CHANGE=R171L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33768582_33769305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360502    GT:AD:DP:GQ:PL    0/1:46,38:84:99:636,0,894
17    33770706    rs16970975    G    A    197.59    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.174;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.177;QD=10.98;ReadPosRankSum=-0.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524511    GT:AD:DP:GQ:PL    0/1:11,7:18:99:228,0,374
17    33770802    rs10512469    C    T    567.72    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.736;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.48;MQ0=0;MQRankSum=2.068;QD=12.9;ReadPosRankSum=-1.974;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524511    GT:AD:DP:GQ:PL    0/1:23,21:44:99:598,0,732
17    33772658    rs8072510    G    T    589.06    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.366;QD=15.92;ReadPosRankSum=0.263;SNPEFF_AMINO_ACID_CHANGE=Y14*;SNPEFF_CODON_CHANGE=taC/taA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_33771634_33772712;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN13;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000285013    GT:AD:DP:GQ:PL    0/1:15,22:37:99:619,0,452
17    33805150    rs2304968    T    C    2807.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_AMINO_ACID_CHANGE=Y383C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33805094_33805204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN12L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000260908    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2841,208,0
17    33805956    rs78856173    A    G    121.44    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.29;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260908    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:151,0,27
17    33806863    rs12451746    G    A    1868.26    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.624;DB;DP=134;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5564;MQ=59.52;MQ0=0;MQRankSum=0.312;QD=13.94;ReadPosRankSum=-1.691;SNPEFF_AMINO_ACID_CHANGE=H122;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33806136_33807214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN12L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000260908    GT:AD:DP:GQ:PL    0/1:65,69:134:99:1898,0,2078
17    33807250    rs9905892    T    A    1725.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLFN12L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000260908    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1759,126,0
17    33933006    rs225284    A    C    169.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=28.17;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262325    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:202,15,0
17    33963611    rs78686213    AT    A    251.57    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;FS=0.0;HRun=2;HaplotypeScore=46.7909;IndelType=D;MQ=59.61;MQ0=0;MQRankSum=-0.228;QD=12.58;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262325    GT:AD:DP:GQ:PL    0/1:11,9:20:99:291,0,435
17    33968871    rs225270    A    T    322.94    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.951;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.162;QD=15.38;ReadPosRankSum=-1.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262325    GT:AD:DP:GQ:PL    0/1:11,10:21:99:353,0,381
17    33998584    rs6505488    C    T    1059.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262325    GT:AD:DP:GQ:PL    1/1:0,29:29:81.24:1092,81,0
17    33998593    rs4796101    C    T    576.97    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.301;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8319;MQ=58.78;MQ0=0;MQRankSum=-1.389;QD=15.18;ReadPosRankSum=0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262325    GT:AD:DP:GQ:PL    0/1:20,18:38:99:607,0,658
17    33998683    rs2301730    A    G    3049.25    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=4.202;DB;DP=177;Dels=0.0;FS=1.714;HRun=0;HaplotypeScore=0.9332;MQ=59.54;MQ0=0;MQRankSum=0.979;QD=17.23;ReadPosRankSum=-0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262325    GT:AD:DP:GQ:PL    0/1:75,102:177:99:3079,0,2184
17    33998802    rs1049379    G    C    2257.10    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.01;DB;DP=163;DS;Dels=0.0;FS=5.666;HRun=2;HaplotypeScore=4.8411;MQ=59.44;MQ0=0;MQRankSum=0.845;QD=13.85;ReadPosRankSum=0.783;SNPEFF_AMINO_ACID_CHANGE=V424;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_33998773_33998919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545922    GT:AD:DP:GQ:PL    0/1:84,78:163:99:2287,0,2491
17    34001121    rs8064895    T    C    422.23    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.015;QD=11.41;ReadPosRankSum=-0.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262325    GT:AD:DP:GQ:PL    0/1:21,16:37:99:452,0,720
17    34001139    rs8077826    G    A    656.25    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=45;Dels=0.0;FS=1.821;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=14.58;ReadPosRankSum=-2.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262325    GT:AD:DP:GQ:PL    0/1:24,21:45:99:686,0,798
17    34072555    rs3744374    G    A    1002.85    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.284;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8952;MQ=59.29;MQ0=0;MQRankSum=1.236;QD=11.02;ReadPosRankSum=-2.069;SNPEFF_AMINO_ACID_CHANGE=A654V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34071530_34073430;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254466    GT:AD:DP:GQ:PL    0/1:53,38:91:99:1033,0,1682
17    34100350    rs58543174    G    GC    1287.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=93.5377;IndelType=I;MQ=59.21;MQ0=0;QD=41.54;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP28;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000338839    GT:AD:DP:GQ:PL    1/1:2,28:31:84.28:1330,84,0
17    34171827    rs4251786    C    T    720.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.94;SNPEFF_AMINO_ACID_CHANGE=Y311;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34171481_34172042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536077    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:754,57,0
17    34264859    rs2280783    A    G    1099.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.053;DB;DP=33;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.683;QD=33.31;ReadPosRankSum=0.053;SNPEFF_AMINO_ACID_CHANGE=D67;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34264762_34264920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293274    GT:AD:DP:GQ:PL    1/1:1,32:33:52.62:1132,53,0
17    34266028    rs9901969    T    C    323.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYZL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293274    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:357,27,0
17    34311387    rs16971802    T    C    653.32    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=53;Dels=0.0;FS=1.064;HRun=0;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=-1.236;QD=12.33;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=K61E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34311374_34311488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCL14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394509    GT:AD:DP:GQ:PL    0/1:29,24:53:99:683,0,837
17    34325532    rs2075746    T    C    63.47    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.741;QD=6.35;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536149    GT:AD:DP:GQ:PL    0/1:6,4:10:93.47:93,0,204
17    34325770    rs864104    C    T    144.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.47;MQ0=0;MQRankSum=-0.572;QD=18.04;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536149    GT:AD:DP:GQ:PL    0/1:2,6:8:64.58:174,0,65
17    34328461    rs854625    A    G    847.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=33.9;SNPEFF_AMINO_ACID_CHANGE=I24T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34328456_34328590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CCL15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354059    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:881,66,0
17    34328542    rs2293788    G    A    194.67    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=24;Dels=0.0;FS=16.25;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.147;QD=8.11;ReadPosRankSum=-0.465;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_34328456_34329100;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CCL14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536149    GT:AD:DP:GQ:PL    0/1:13,11:24:99:225,0,480
17    34340161    rs1734953    T    A    172.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.68;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293280    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:205,18,0
17    34340284    rs1003645    C    T    393.25    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.059;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=11.57;ReadPosRankSum=0.378;SNPEFF_AMINO_ACID_CHANGE=V123M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34340097_34340348;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL23;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293280    GT:AD:DP:GQ:PL    0/1:18,15:34:99:423,0,507
17    34341082    rs1719204    C    G    221.24    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=20.11;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293280    GT:AD:DP:GQ:PL    0/1:4,7:11:99:251,0,114
17    34398495    rs14304    C    T    150.85    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=10.77;ReadPosRankSum=0.71;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004921    GT:AD:DP:GQ:PL    0/1:8,6:14:99:181,0,254
17    34416453    rs1719131    G    A    2271.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225245    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2305,172,0
17    34416665    rs1719133    A    G    2832    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=57.81;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225245    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2865,214,0
17    34431287    rs1049750    G    T    7322.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=219;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=56.71;MQ0=0;QD=33.44;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_34431220_34431374;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250151    GT:AD:DP:GQ:PL    1/1:1,217:219:99:7323,551,0
17    34431852    rs116657123    A    G    767.06    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.458;DB;DP=71;Dels=0.0;FS=4.96;HRun=0;HaplotypeScore=0.0;MQ=40.97;MQ0=3;MQRankSum=-1.049;QD=10.8;ReadPosRankSum=-0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250151    GT:AD:DP:GQ:PL    0/1:38,32:71:99:797,0,1037
17    34431884    rs55906345    T    C    2457.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=37.01;MQ0=5;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250151    GT:AD:DP:GQ:PL    1/1:1,85:86:99:2490,214,0
17    34431961    rs1719146    T    C    2501.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=31.44;MQ0=6;QD=28.75;SNPEFF_AMINO_ACID_CHANGE=T39;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34431921_34432035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250151    GT:AD:DP:GQ:PL    1/1:0,86:87:99:2534,229,0
17    34432125    rs1719147    A    G    509.60    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=52.64;MQ0=0;MQRankSum=0.5;QD=14.56;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250151    GT:AD:DP:GQ:PL    0/1:18,17:35:99:540,0,611
17    34432237    rs72833526    G    A    32.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.51;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250151    GT:AD:DP:GQ:PL    0/1:2,3:5:62.53:63,0,67
17    34499247    .    T    C    335.68    MQFilter40;QDFilter2    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.972;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.2775;MQ=13.19;MQ0=106;MQRankSum=2.681;QD=1.34;ReadPosRankSum=1.332;SNPEFF_AMINO_ACID_CHANGE=K155R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34499214_34499323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340106    GT:AD:DP:GQ:PL    0/1:192,58:250:99:366,0,1257
17    34746953    .    A    C    75.58    MQFilter40    AC=2;AF=1.00;AN=2;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=7.87;MQ0=22;QD=2.7;SNPEFF_AMINO_ACID_CHANGE=R297;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34746120_34747002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D3G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535805    GT:AD:DP:GQ:PL    1/1:16,11:27:14.90:108,15,0
17    34797251    .    G    A    226.35    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.766;DP=28;Dels=0.0;FS=3.214;HRun=0;HaplotypeScore=0.9159;MQ=25.52;MQ0=8;MQRankSum=0.95;QD=8.08;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330458    GT:AD:DP:GQ:PL    0/1:16,12:28:99:256,0,161
17    34797356    rs75998992    G    C    400.75    MQFilter40    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=2.757;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=36.18;MQ0=2;MQRankSum=-4.297;QD=5.57;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330458    GT:AD:DP:GQ:PL    0/1:43,29:72:99:431,0,1386
17    34797608    .    T    C    63.29    MQFilter40;QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.066;DP=203;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=7.65;MQ0=140;MQRankSum=2.124;QD=0.31;ReadPosRankSum=0.355;SNPEFF_AMINO_ACID_CHANGE=S488G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34797172_34798054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D3G;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394453    GT:AD:DP:GQ:PL    0/1:171,32:203:93.28:93,0,113
17    34842521    rs4796224    A    G    1213.05    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.539;DB;DP=92;Dels=0.0;FS=1.891;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.422;QD=13.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490126    GT:AD:DP:GQ:PL    0/1:45,47:92:99:1243,0,1163
17    34848874    rs2306589    T    C    144.67    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268852    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:175,0,23
17    34853966    rs7502698    G    T    155.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNHIT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225410    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
17    34854280    rs2306590    G    A    1807.75    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=116;Dels=0.0;FS=2.378;HRun=1;HaplotypeScore=1.8907;MQ=60.0;MQ0=0;MQRankSum=-0.375;QD=15.58;ReadPosRankSum=1.524;SNPEFF_AMINO_ACID_CHANGE=L321F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34854110_34854373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415126    GT:AD:DP:GQ:PL    0/1:52,64:116:99:1838,0,1647
17    34862220    rs1109442    T    C    834.06    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.125;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5774;MQ=59.52;MQ0=0;MQRankSum=1.392;QD=17.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268852    GT:AD:DP:GQ:PL    0/1:21,27:48:99:864,0,658
17    34865047    rs180814749    C    T    207.43    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.291;DB;DP=23;Dels=0.0;FS=9.165;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.346;QD=9.02;ReadPosRankSum=-0.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544606    GT:AD:DP:GQ:PL    0/1:14,9:23:99:237,0,494
17    34866546    rs2306593    C    T    72.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.46;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544606    GT:AD:DP:GQ:PL    0/1:2,3:5:63.69:102,0,64
17    34869150    rs6607296    C    A    826.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268852    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:859,63,0
17    34869155    rs8882    G    A    383.71    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.819;DB;DP=25;Dels=0.0;FS=3.128;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.356;QD=15.35;ReadPosRankSum=2.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268852    GT:AD:DP:GQ:PL    0/1:11,14:25:99:414,0,370
17    34870708    rs4796227    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268852    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    34884149    rs35989249    T    C    43.89    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.868;QD=3.14;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268852    GT:AD:DP:GQ:PL    0/1:11,3:14:73.88:74,0,401
17    34935878    rs2074103    C    A    594.31    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.19;DB;DP=51;Dels=0.0;FS=2.911;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-0.051;QD=11.65;ReadPosRankSum=2.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GGNBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304718    GT:AD:DP:GQ:PL    0/1:30,21:51:99:624,0,1045
17    34942595    rs1106908    G    A    199.65    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=29;Dels=0.0;FS=2.456;HRun=2;HaplotypeScore=2.7914;MQ=59.2;MQ0=0;MQRankSum=1.014;QD=6.88;ReadPosRankSum=0.024;SNPEFF_AMINO_ACID_CHANGE=K536;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_34942480_34942628;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GGNBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304718    GT:AD:DP:GQ:PL    0/1:20,9:29:99:230,0,693
17    34943719    rs3744593    C    T    1087.35    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=3.172;DB;DP=73;Dels=0.0;FS=3.869;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.094;QD=14.9;ReadPosRankSum=-1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GGNBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483256    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1117,0,1095
17    34951327    rs2285639    C    T    123.82    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=15.48;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251312    GT:AD:DP:GQ:PL    0/1:3,5:8:90.26:154,0,90
17    34956585    rs77847431    CCA    C    236.32    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=3.306;DB;DP=27;FS=1.721;HRun=0;HaplotypeScore=96.5053;IndelType=D;MQ=58.27;MQ0=0;MQRankSum=0.639;QD=8.75;ReadPosRankSum=-0.639;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394445    GT:AD:DP:GQ:PL    0/1:19,8:27:99:275,0,934
17    35346894    rs2291322    G    A    200.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225402    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
17    35378121    rs2301685    G    A    353.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225402    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:386,30,0
17    35378217    rs2301686    C    A    610.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225402    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:643,48,0
17    35478362    rs1470452    T    C    3595.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_AMINO_ACID_CHANGE=T152;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_35478277_35478412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361253    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3595,283,0
17    35486486    rs9789070    C    T    281.63    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.669;QD=13.41;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    0/1:11,10:21:99:312,0,276
17    35519222    rs9906543    C    T    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
17    35549275    rs2305099    T    C    799.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:833,60,0
17    35550158    rs12603097    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    35550179    rs12603098    C    T    91.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=22.9;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:124,9,0
17    35550448    rs2305097    C    A    619.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:653,51,0
17    35557289    rs11659129    C    T    935.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,25:25:75.23:968,75,0
17    35562546    rs2278679    C    T    171.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:205,18,0
17    35563914    rs3816309    C    T    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
17    35591737    rs2246459    C    T    337.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:371,27,0
17    35605294    rs2287352    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    35608664    rs9906044    T    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    35608781    rs146590038    CCT    C    294.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=31.3696;IndelType=D;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:336,24,0
17    35608889    rs1519091    G    A    1803.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,57:58:99:1837,138,0
17    35609746    rs2252757    G    A    2510.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=59.37;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2544,190,0
17    35632584    rs34196517    T    C    121.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
17    35632979    rs2542660    C    A    1042.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=29.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335166    GT:AD:DP:GQ:PL    1/1:0,35:35:90.22:1076,90,0
17    35639975    rs2254914    C    T    129.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394403    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
17    35692201    rs1096038    C    T    765.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.37;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353139    GT:AD:DP:GQ:PL    1/1:0,28:28:60.17:799,60,0
17    35692348    rs4795192    A    G    1606.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.421;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=52.73;MQ0=0;MQRankSum=3.283;QD=29.76;ReadPosRankSum=-0.724;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353139    GT:AD:DP:GQ:PL    1/1:4,50:54:99:1640,126,0
17    35696804    rs58654829    G    A    2836.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.5;MQ0=0;QD=27.81;SNPEFF_AMINO_ACID_CHANGE=F15;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_35696764_35696810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353139    GT:AD:DP:GQ:PL    1/1:0,102:102:99:2870,223,0
17    35696820    rs67231825    AAAAG    A    5244.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;FS=0.0;HRun=0;HaplotypeScore=846.7394;IndelType=D;MQ=54.58;MQ0=0;QD=54.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353139    GT:AD:DP:GQ:PL    1/1:4,92:96:99:5245,274,0
17    35800919    rs853229    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TADA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    35818462    rs2680720    T    A    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TADA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225396    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
17    35825367    rs853207    C    T    36.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TADA2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
17    35898342    rs2074409    G    T    624.11    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.725;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.222;QD=17.34;ReadPosRankSum=-0.982;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421408    GT:AD:DP:GQ:PL    0/1:17,19:36:99:654,0,599
17    35899141    rs1034686    T    A    113.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.88;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421408    GT:AD:DP:GQ:PL    0/1:2,4:6:63.71:143,0,64
17    35902225    rs3110623    C    G    998.83    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=5.124;DB;DP=67;Dels=0.0;FS=6.429;HRun=4;HaplotypeScore=1.5983;MQ=60.0;MQ0=0;MQRankSum=0.484;QD=14.91;ReadPosRankSum=0.786;SNPEFF_AMINO_ACID_CHANGE=P1017;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_35902074_35902667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNRG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345615    GT:AD:DP:GQ:PL    0/1:31,36:67:99:1029,0,940
17    35944539    rs4239215    C    A    1945.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339208    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1979,147,0
17    35956263    rs4795207    T    C    1193.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;QD=38.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNRG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339208    GT:AD:DP:GQ:PL    1/1:0,31:31:90.30:1226,90,0
17    35984410    rs7216445    T    C    2262.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_AMINO_ACID_CHANGE=M295V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_35984390_35984480;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX52;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394367    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2295,172,0
17    35988672    rs7224513    C    T    1815.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.26;SNPEFF_AMINO_ACID_CHANGE=R156;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_35988605_35988716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX52;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394367    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1849,138,0
17    36003275    rs3813911    T    A    88.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349699    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    36003359    rs3813910    A    G    613.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349699    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:646,48,0
17    36047275    rs1800929    C    T    503.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=31.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539087    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:536,42,0
17    36047417    rs3110641    A    G    713.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.03;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225893    GT:AD:DP:GQ:PL    1/1:0,24:24:57.16:746,57,0
17    36058980    rs2269843    C    T    121.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;MQRankSum=-0.488;QD=7.62;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225893    GT:AD:DP:GQ:PL    0/1:10,6:16:99:152,0,332
17    36093863    rs3216929    G    GCAGA    485.91    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=93.3152;IndelType=I;MQ=58.83;MQ0=0;MQRankSum=0.0;QD=19.44;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225893    GT:AD:DP:GQ:PL    0/1:19,6:25:99:525,0,161
17    36348629    .    G    A    45.01    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.05;MQ0=34;QD=1.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    1/1:3,35:38:8.99:77,9,0
17    36352244    rs62074772    G    A    118.77    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.01;MQ0=0;MQRankSum=0.736;QD=19.79;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    0/1:1,5:6:23.72:149,0,24
17    36352408    rs11407739    G    GT    2691.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.841;DB;DP=103;FS=0.0;HRun=11;HaplotypeScore=326.197;IndelType=I;MQ=46.75;MQ0=12;MQRankSum=0.436;QD=23.4;ReadPosRankSum=-1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    1/1:12,102:103:99:2733,232,0
17    36352489    rs4796259    A    C    446.04    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.189;DB;DP=88;Dels=0.0;FS=1.465;HRun=0;HaplotypeScore=0.9933;MQ=32.99;MQ0=11;MQRankSum=-0.584;QD=5.07;ReadPosRankSum=-0.112;SNPEFF_AMINO_ACID_CHANGE=F278C;SNPEFF_CODON_CHANGE=tTt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_36352422_36352526;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544906    GT:AD:DP:GQ:PL    0/1:66,22:88:99:476,0,1515
17    36352537    rs62074773    A    G    970.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.31;MQ0=12;QD=22.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    1/1:1,43:44:90.25:1003,90,0
17    36352572    rs62074774    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.97;MQ0=12;QD=2.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    1/1:0,15:15:6.02:67,6,0
17    36353452    rs76528461    C    T    634.55    MQFilter40    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.618;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.41;MQ0=0;MQRankSum=-0.743;QD=14.76;ReadPosRankSum=-3.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    0/1:20,23:43:99:665,0,632
17    36353560    rs111638343    C    T    957.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.59;MQ0=43;QD=12.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    1/1:0,76:76:90.23:991,90,0
17    36353761    rs62074778    C    T    775.08    MQFilter40    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.829;DB;DP=187;Dels=0.0;FS=5.547;HRun=0;HaplotypeScore=0.8941;MQ=38.2;MQ0=12;MQRankSum=-0.166;QD=4.14;ReadPosRankSum=-0.256;SNPEFF_AMINO_ACID_CHANGE=W212*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_36353601_36353765;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000544906    GT:AD:DP:GQ:PL    0/1:145,42:187:99:805,0,3738
17    36353900    rs2610297    G    C    350.44    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.008;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=33.96;MQ0=0;MQRankSum=-0.786;QD=17.52;ReadPosRankSum=-0.611;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    0/1:5,15:20:67.68:380,0,68
17    36357280    rs149632022    T    TA    81    QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.415;DB;DP=88;FS=5.204;HRun=16;HaplotypeScore=463.7946;IndelType=I;MQ=50.4;MQ0=1;MQRankSum=1.226;QD=0.82;ReadPosRankSum=-1.621;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    0/1:75,11:88:99:120,0,476
17    36357295    rs79239780    A    G    244.72    HaplotypeScoreFilter13    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=2.978;DB;DP=86;Dels=0.0;FS=7.852;HRun=0;HaplotypeScore=13.4223;MQ=48.39;MQ0=2;MQRankSum=1.773;QD=2.85;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    0/1:70,16:86:99:275,0,1069
17    36358847    rs77355093    T    A    8421.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.21;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=I127L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_36358842_36359042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544906    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8421,650,0
17    36398000    rs3987852    T    G    49.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=40.24;MQ0=1;MQRankSum=-0.684;QD=5.5;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    0/1:6,3:9:79.48:79,0,169
17    36398162    .    ACACC    A    178.47    PASS    AB=0.891;AC=1;AF=0.50;AN=2;BaseQRankSum=2.407;DP=47;FS=0.0;HRun=0;HaplotypeScore=251.6189;IndelType=D;MQ=36.55;MQ0=2;MQRankSum=0.048;QD=3.64;ReadPosRankSum=0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP11-1407O15.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312412    GT:AD:DP:GQ:PL    0/1:43,6:47:99:217,0,2768
17    36533794    rs7217149    G    C    441.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOCS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331159    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:475,36,0
17    36628477    rs9916392    A    G    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431231    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
17    36635721    rs7405920    C    T    1427.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.59;MQ0=1;QD=32.44;SNPEFF_AMINO_ACID_CHANGE=N733;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_36635677_36635738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443378    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1461,114,0
17    36638255    rs7503829    C    T    1436.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431231    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1470,117,0
17    36638948    rs2303992    A    G    146.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=46.15;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548333    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:179,15,0
17    36646291    rs12937928    A    G    248.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431231    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:281,21,0
17    36646386    rs9891156    A    G    516.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=A1010;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_36646343_36646416;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431231    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:549,42,0
17    36646726    rs117469511    C    T    95.94    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.281;DB;DP=65;Dels=0.0;FS=1.301;HRun=1;HaplotypeScore=0.9996;MQ=43.09;MQ0=1;MQRankSum=-2.881;QD=1.48;ReadPosRankSum=-0.679;SNPEFF_AMINO_ACID_CHANGE=Y1028;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_36646703_36646792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431231    GT:AD:DP:GQ:PL    0/1:52,13:65:99:126,0,1664
17    36653940    rs9897523    A    G    215.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.64;MQ0=0;QD=23.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431231    GT:AD:DP:GQ:PL    1/1:0,9:9:24.03:248,24,0
17    36734700    rs7503695    T    C    58.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.2;MQ0=0;QD=9.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264659    GT:AD:DP:GQ:PL    1/1:0,6:6:9.01:91,9,0
17    36734706    rs144253512    CAGCCGG    C    340.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=74.0434;IndelType=D;MQ=55.14;MQ0=0;QD=42.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRCIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264659    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:382,21,0
17    36861983    rs17855918    T    C    250.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.79;SNPEFF_AMINO_ACID_CHANGE=V33A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_36861795_36861994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325718    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:283,21,0
17    36865267    rs72836944    C    T    195.34    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=24.42;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464666    GT:AD:DP:GQ:PL    0/1:2,6:8:60.38:225,0,60
17    36894839    rs1138349    G    A    2857.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=35.28;SNPEFF_AMINO_ACID_CHANGE=D145;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_36894794_36894848;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCGF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360797    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2890,217,0
17    36895206    rs2075056    A    G    676.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CISD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439660    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:709,57,0
17    36896746    rs12601476    T    C    362.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CISD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439660    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:395,30,0
17    36909061    rs228274    A    G    1476.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=32.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006449.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539023    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1510,114,0
17    36912109    rs146716075    TACTA    T    1736.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=176.7631;IndelType=D;MQ=56.61;MQ0=0;QD=51.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225426    GT:AD:DP:GQ:PL    1/1:2,32:34:96.33:1779,96,0
17    36925750    rs2075060    G    A    247.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269554    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
17    36934124    rs2075061    C    T    74.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=10.67;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP4K2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269554    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,127
17    36958792    rs4794791    A    C    322.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CWC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225428    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
17    36993655    rs645686    T    C    161.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=20.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf98;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398575    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:194,18,0
17    37006349    rs112644851    GTT    G    1105.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=11;HaplotypeScore=135.3216;IndelType=D;MQ=60.98;MQ0=0;QD=28.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378096    GT:AD:DP:GQ:PL    1/1:3,36:39:99:1147,108,0
17    37010150    rs923370    G    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245857    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    37070658    rs525989    A    G    417.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=27.84;SNPEFF_AMINO_ACID_CHANGE=S110;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37070578_37070728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LASP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419929    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:451,39,0
17    37070737    rs525767    A    G    388.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318008    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:421,33,0
17    37071189    rs2241009    C    T    959.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=38.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318008    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:993,72,0
17    37071229    rs78986381    C    T    587.38    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.892;QD=15.46;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318008    GT:AD:DP:GQ:PL    0/1:18,20:38:99:617,0,530
17    37074932    rs3744075    C    T    1143.23    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=1.414;DB;DP=67;Dels=0.0;FS=0.961;HRun=1;HaplotypeScore=1.6006;MQ=58.96;MQ0=0;MQRankSum=-0.145;QD=17.06;ReadPosRankSum=1.229;SNPEFF_AMINO_ACID_CHANGE=I173;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37074858_37075579;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LASP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433206    GT:AD:DP:GQ:PL    0/1:25,42:67:99:1173,0,746
17    37093243    rs594415    G    T    150.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.14;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378079    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:184,15,0
17    37101380    rs9906595    T    C    663.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_AMINO_ACID_CHANGE=Q209R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37101213_37101389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378079    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:697,57,0
17    37187388    rs17603780    T    C    223.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=18.63;ReadPosRankSum=-0.289;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC091178.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425901    GT:AD:DP:GQ:PL    0/1:4,8:12:99:253,0,112
17    37188037    rs34112047    A    G    2002.45    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.377;DB;DP=127;Dels=0.0;FS=2.278;HRun=1;HaplotypeScore=1.8664;MQ=59.52;MQ0=0;MQRankSum=-2.098;QD=15.77;ReadPosRankSum=0.475;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC091178.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425901    GT:AD:DP:GQ:PL    0/1:57,70:127:99:2032,0,1768
17    37188240    rs34700711    C    T    1448.09    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.448;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.6;MQ0=0;MQRankSum=-0.28;QD=12.7;ReadPosRankSum=0.413;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC091178.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425901    GT:AD:DP:GQ:PL    0/1:63,51:114:99:1478,0,2038
17    37188613    rs35008241    C    T    2432.87    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.331;DB;DP=159;Dels=0.0;FS=1.253;HRun=1;HaplotypeScore=1.5661;MQ=59.68;MQ0=0;MQRankSum=1.252;QD=15.3;ReadPosRankSum=-0.855;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=AC091178.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425901    GT:AD:DP:GQ:PL    0/1:77,82:159:99:2463,0,2157
17    37224288    rs4405583    G    A    141.94    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=17.74;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315392    GT:AD:DP:GQ:PL    0/1:3,5:8:99:172,0,103
17    37228765    rs9907595    A    G    32.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315392    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:64,6,0
17    37234111    rs3744078    G    A    613.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=29.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394316    GT:AD:DP:GQ:PL    1/1:0,21:21:54.13:647,54,0
17    37239671    rs9891236    A    G    381.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441877    GT:AD:DP:GQ:PL    1/1:0,14:14:36.08:415,36,0
17    37243927    rs12602945    A    G    162.28    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=9.55;ReadPosRankSum=-0.635;SNPEFF_AMINO_ACID_CHANGE=Y207;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37243860_37243955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394318    GT:AD:DP:GQ:PL    0/1:9,8:17:99:192,0,222
17    37244004    rs12600774    G    A    35.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.12;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315392    GT:AD:DP:GQ:PL    0/1:2,3:5:65.59:66,0,73
17    37253064    rs4795348    T    G    78.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=11.17;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315392    GT:AD:DP:GQ:PL    0/1:3,4:7:99:108,0,106
17    37253316    rs4795349    G    A    526.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315392    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:559,45,0
17    37261981    rs3744351    T    C    518.67    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.396;DB;DP=33;Dels=0.0;FS=3.153;HRun=2;HaplotypeScore=1.8319;MQ=59.3;MQ0=0;MQRankSum=-0.433;QD=15.72;ReadPosRankSum=-0.057;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415163    GT:AD:DP:GQ:PL    0/1:16,17:33:99:549,0,516
17    37262059    rs3744352    C    T    1092.86    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=0.392;DB;DP=83;Dels=0.0;FS=0.945;HRun=0;HaplotypeScore=4.1448;MQ=59.5;MQ0=0;MQRankSum=1.327;QD=13.17;ReadPosRankSum=1.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415163    GT:AD:DP:GQ:PL    0/1:43,40:83:99:1123,0,1135
17    37265378    rs16490    C    T    311.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315392    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:345,27,0
17    37317372    .    A    G    31.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269586    GT:AD:DP:GQ:PL    0/1:2,2:4:54.77:62,0,55
17    37317672    rs511163    C    G    418.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269586    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:451,33,0
17    37342835    .    C    G    168.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DP=9;Dels=0.0;FS=3.332;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=18.68;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344140    GT:AD:DP:GQ:PL    0/1:3,6:9:94.30:198,0,94
17    37359427    rs59332263    A    AT    149.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=25;HaplotypeScore=336.2467;IndelType=I;MQ=45.67;MQ0=0;QD=2.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225430    GT:AD:DP:GQ:PL    1/1:42,7:50:38.33:191,38,0
17    37369416    rs1859262    G    A    407.76    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=28;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.8667;MQ=58.33;MQ0=0;MQRankSum=0.317;QD=14.56;ReadPosRankSum=0.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333461    GT:AD:DP:GQ:PL    0/1:13,15:28:99:438,0,310
17    37371141    rs8070891    G    C    2369.43    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.917;DB;DP=153;Dels=0.0;FS=1.552;HRun=0;HaplotypeScore=1.1567;MQ=59.55;MQ0=0;MQRankSum=0.377;QD=15.49;ReadPosRankSum=-1.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333461    GT:AD:DP:GQ:PL    0/1:67,86:153:99:2399,0,1753
17    37371519    rs11078892    T    C    267.23    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.816;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.077;QD=11.62;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333461    GT:AD:DP:GQ:PL    0/1:12,11:23:99:297,0,424
17    37417575    rs3744348    C    G    254.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264658    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
17    37421767    rs2061338    T    C    186.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264658    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:219,18,0
17    37425238    rs1966916    T    G    319.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264658    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:352,27,0
17    37425262    rs1966915    A    C    91.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264658    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
17    37427114    rs58700793    TA    T    98.98    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=20;FS=10.898;HRun=16;HaplotypeScore=104.654;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=0.794;QD=4.95;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXL20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264658    GT:AD:DP:GQ:PL    0/1:6,11:20:17.01:138,0,17
17    37580084    rs80266845    A    G    303.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.93;MQ0=0;MQRankSum=1.006;QD=11.69;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300651    GT:AD:DP:GQ:PL    0/1:13,13:26:99:334,0,369
17    37580203    rs7405667    T    C    113.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300651    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:146,12,0
17    37587534    rs72434762    CT    C    196.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737;DB;DP=22;FS=0.0;HRun=13;HaplotypeScore=106.1807;IndelType=D;MQ=57.3;MQ0=0;MQRankSum=1.47;QD=8.94;ReadPosRankSum=1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300651    GT:AD:DP:GQ:PL    1/1:11,11:22:15.23:238,15,0
17    37596434    rs8076997    T    C    707.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300651    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:740,54,0
17    37626963    rs11657899    G    A    236.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430627    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:270,21,0
17    37657460    rs11406230    C    CT    456.88    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.78;DB;DP=32;FS=4.771;HRun=10;HaplotypeScore=82.9939;IndelType=I;MQ=59.37;MQ0=0;MQRankSum=-1.157;QD=14.28;ReadPosRankSum=1.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430627    GT:AD:DP:GQ:PL    0/1:12,19:32:99:496,0,123
17    37671910    rs8070799    G    A    368.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430627    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:401,33,0
17    37673920    rs2303315    T    A    82.38    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.73;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430627    GT:AD:DP:GQ:PL    0/1:1,5:6:29.72:112,0,30
17    37783787    rs3751903    C    G    94.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254079    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
17    37789998    rs11651497    T    C    622.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=29.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254079    GT:AD:DP:GQ:PL    1/1:0,20:21:54.17:655,54,0
17    37790371    rs907094    G    A    1941.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254079    GT:AD:DP:GQ:PL    1/1:1,56:57:99:1974,150,0
17    37813338    rs2941515    T    C    514.16    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.484;DB;DP=48;Dels=0.0;FS=1.219;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.265;QD=10.71;ReadPosRankSum=0.176;SNPEFF_AMINO_ACID_CHANGE=F99;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37813261_37813338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336308    GT:AD:DP:GQ:PL    0/1:25,23:48:99:544,0,834
17    37813462    rs2952139    G    A    37.93    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.42;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336308    GT:AD:DP:GQ:PL    0/1:2,5:7:67.92:68,0,70
17    37814080    rs1877031    G    A    780.17    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.871;QD=13.0;ReadPosRankSum=-0.28;SNPEFF_AMINO_ACID_CHANGE=R117Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37814028_37814105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336308    GT:AD:DP:GQ:PL    0/1:29,31:60:99:810,0,831
17    37815475    rs2941514    A    G    82.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.133;QD=5.16;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    0/1:10,6:16:99:113,0,319
17    37815563    rs79888626    G    C    248.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=27.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:281,21,0
17    37815623    rs73296106    G    A    144.56    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:175,0,23
17    37815749    rs73296109    G    A    397.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.172;QD=14.19;ReadPosRankSum=-0.712;SNPEFF_AMINO_ACID_CHANGE=T228;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37815714_37815806;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394250    GT:AD:DP:GQ:PL    0/1:14,14:28:99:427,0,372
17    37816461    rs2952149    T    C    384.54    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.454;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.912;QD=12.4;ReadPosRankSum=0.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    0/1:19,12:31:99:415,0,559
17    37817223    rs2934959    C    A    505.20    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.67;DB;DP=61;Dels=0.0;FS=2.422;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=8.28;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    0/1:40,21:61:99:535,0,1166
17    37817389    rs2934960    C    T    254.19    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.433;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=14.95;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    0/1:8,9:17:99:284,0,271
17    37817482    rs2271308    T    C    71.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
17    37818561    rs2941513    T    C    354.29    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.175;DB;DP=33;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=10.74;ReadPosRankSum=-0.524;SNPEFF_AMINO_ACID_CHANGE=V381;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37818504_37818597;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394250    GT:AD:DP:GQ:PL    0/1:18,15:33:99:384,0,599
17    37818932    rs2952150    A    G    71.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.19;MQ0=0;MQRankSum=0.361;QD=7.92;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    0/1:5,4:9:99:101,0,139
17    37819241    rs2934961    A    G    210.88    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.781;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.439;QD=12.4;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    0/1:10,7:17:99:241,0,338
17    37819335    rs15968    C    G    40.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443521    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:71,0,25
17    37821770    rs2941510    C    T    246.30    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.064;QD=12.32;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336308    GT:AD:DP:GQ:PL    0/1:11,9:20:99:276,0,358
17    37822311    rs1053651    A    C    1812.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=A151;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37821969_37822808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309889    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1845,141,0
17    37825089    rs200173    A    G    78.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300658    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
17    37829129    rs2247862    A    G    497.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.45;MQ0=0;MQRankSum=0.413;QD=14.63;ReadPosRankSum=0.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269582    GT:AD:DP:GQ:PL    0/1:17,17:34:99:527,0,539
17    37829570    rs903504    C    G    68.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=8.55;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269582    GT:AD:DP:GQ:PL    0/1:2,6:8:61.17:98,0,61
17    37829571    rs903503    C    A    81.58    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=11.65;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269582    GT:AD:DP:GQ:PL    0/1:1,6:7:27.20:112,0,27
17    37829604    rs903502    C    T    208.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=16.03;ReadPosRankSum=1.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269582    GT:AD:DP:GQ:PL    0/1:6,7:13:99:238,0,213
17    37871374    rs4252631    C    T    44.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269571    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:75,0,33
17    37879588    rs1136201    A    G    1087.04    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.795;DB;DP=77;Dels=0.0;FS=7.905;HRun=0;HaplotypeScore=0.9469;MQ=59.7;MQ0=0;MQRankSum=0.503;QD=14.12;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=I379V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37879572_37879710;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERBB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445658    GT:AD:DP:GQ:PL    0/1:36,41:77:99:1117,0,1028
17    37898543    rs2952142    T    C    6316.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=201;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5001;MQ=59.56;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=C20R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_37898505_37898709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445327    GT:AD:DP:GQ:PL    1/1:0,201:201:99:6317,478,0
17    37921899    rs2952141    C    T    288.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IKZF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346243    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
17    38068373    rs870830    G    A    129.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GSDMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309481    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
17    38068382    rs870829    A    C    83.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GSDMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309481    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
17    38068514    rs1011082    T    C    1349.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.452;QD=36.47;ReadPosRankSum=0.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GSDMB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309481    GT:AD:DP:GQ:PL    1/1:1,36:37:67.71:1383,68,0
17    38121993    rs3894194    G    A    568.74    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=2.974;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.013;QD=11.85;ReadPosRankSum=1.055;SNPEFF_AMINO_ACID_CHANGE=R18Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38121936_38122154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:25,23:48:99:599,0,794
17    38122680    rs7212938    G    T    378.82    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.707;DB;DP=38;Dels=0.0;FS=5.591;HRun=1;HaplotypeScore=0.9933;MQ=57.53;MQ0=0;MQRankSum=-0.799;QD=9.97;ReadPosRankSum=-1.644;SNPEFF_AMINO_ACID_CHANGE=V128L;SNPEFF_CODON_CHANGE=Gtg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38122513_38122690;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:24,14:38:99:409,0,787
17    38122686    rs7212944    G    A    261.11    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.121;DB;DP=33;Dels=0.0;FS=5.673;HRun=1;HaplotypeScore=0.0;MQ=57.15;MQ0=0;MQRankSum=1.265;QD=7.91;ReadPosRankSum=-1.888;SNPEFF_AMINO_ACID_CHANGE=E130K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38122513_38122690;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:21,12:33:99:291,0,727
17    38122708    rs9914973    T    C    242.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.709;DB;DP=36;Dels=0.0;FS=2.717;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.886;QD=6.74;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:24,12:36:99:272,0,831
17    38127713    rs3916061    A    G    110.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
17    38128648    rs3859192    C    T    32.95    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.198;QD=4.12;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:5,3:8:62.94:63,0,157
17    38128714    rs3859191    G    A    153.35    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7465;MQ=58.95;MQ0=0;MQRankSum=-0.471;QD=6.97;ReadPosRankSum=-1.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:13,8:21:99:183,0,396
17    38128765    rs8077456    G    C    649.73    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.99;DB;DP=47;Dels=0.0;FS=2.157;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.011;QD=13.82;ReadPosRankSum=0.223;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:24,23:47:99:680,0,801
17    38129038    rs66749378    AG    A    1328.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=47;FS=0.0;HRun=6;HaplotypeScore=466.3098;IndelType=D;MQ=36.4;MQ0=0;MQRankSum=0.709;QD=28.27;ReadPosRankSum=1.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    1/1:3,44:47:99:1371,117,0
17    38129050    .    T    TTGGACAAGA    6055.27    PASS    AC=2;AF=1.00;AN=2;DP=50;FS=0.0;HRun=0;HaplotypeScore=483.6;IndelType=I;MQ=35.81;MQ0=0;QD=121.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    1/1:23,26:50:99:6055,135,0
17    38129097    rs10852937    C    G    249.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.86;MQ0=0;QD=15.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    1/1:0,16:16:24.07:283,24,0
17    38129996    rs60137005    A    T    99.88    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.361;QD=11.1;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:5,4:9:99:130,0,180
17    38130139    rs56326707    C    T    361.87    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DB;DP=19;Dels=0.0;FS=2.865;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.395;QD=19.05;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:6,13:19:99:392,0,198
17    38130492    rs62066853    T    C    146.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=60.0;MQ0=0;MQRankSum=-1.186;QD=12.22;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:6,6:12:99:177,0,137
17    38131187    rs56030650    C    A    525.11    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.473;DB;DP=44;Dels=0.0;FS=12.42;HRun=1;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;MQRankSum=-0.203;QD=11.93;ReadPosRankSum=-0.96;SNPEFF_AMINO_ACID_CHANGE=T314N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38131153_38131267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSDMA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301659    GT:AD:DP:GQ:PL    0/1:23,21:44:99:555,0,656
17    38140385    rs9905305    A    G    31.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264639    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
17    38140524    rs3816471    T    C    785.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=52.09;MQ0=0;QD=28.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264639    GT:AD:DP:GQ:PL    1/1:5,23:28:66.19:818,66,0
17    38142677    rs3816472    A    C    541.60    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.516;DB;DP=32;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=16.41;ReadPosRankSum=-2.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264639    GT:AD:DP:GQ:PL    0/1:11,21:32:99:572,0,319
17    38145088    rs9915252    C    G    285.81    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=32;Dels=0.0;FS=1.503;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.421;QD=8.93;ReadPosRankSum=0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264639    GT:AD:DP:GQ:PL    0/1:20,12:32:99:316,0,640
17    38146263    rs3217173    GA    G    341.66    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.761;DB;DP=13;FS=3.736;HRun=2;HaplotypeScore=37.2542;IndelType=D;MQ=60.83;MQ0=0;MQRankSum=-0.592;QD=26.28;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264639    GT:AD:DP:GQ:PL    0/1:3,10:13:99:381,0,105
17    38146542    rs3744245    C    G    77.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.421;QD=9.71;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264639    GT:AD:DP:GQ:PL    0/1:4,4:8:95.56:108,0,96
17    38151014    rs2241245    C    T    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264639    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
17    38152304    rs8071037    A    T    184.90    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=58.45;MQ0=0;MQRankSum=-0.386;QD=12.33;ReadPosRankSum=1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264639    GT:AD:DP:GQ:PL    0/1:4,10:15:99:215,0,114
17    38152373    rs35244421    CA    C    225.57    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=49;FS=0.0;HRun=15;HaplotypeScore=371.3392;IndelType=D;MQ=53.55;MQ0=0;MQRankSum=-0.487;QD=4.6;ReadPosRankSum=-1.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485835    GT:AD:DP:GQ:PL    0/1:25,20:49:99:265,0,197
17    38153473    rs12453334    C    T    384.57    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=14.79;ReadPosRankSum=-0.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485835    GT:AD:DP:GQ:PL    0/1:14,12:26:99:415,0,475
17    38153554    rs2241244    G    C    1200.78    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=6.049;DB;DP=84;Dels=0.0;FS=2.059;HRun=1;HaplotypeScore=3.0304;MQ=59.17;MQ0=0;MQRankSum=0.054;QD=14.29;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485835    GT:AD:DP:GQ:PL    0/1:41,43:84:99:1231,0,1121
17    38153714    rs10671123    T    TGA    2357.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=0;HaplotypeScore=121.761;IndelType=I;MQ=60.41;MQ0=0;QD=48.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485835    GT:AD:DP:GQ:PL    1/1:6,42:49:99:2399,132,0
17    38153875    rs7021    T    A    189.32    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=19;Dels=0.0;FS=7.858;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.619;QD=9.96;ReadPosRankSum=-0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485835    GT:AD:DP:GQ:PL    0/1:11,8:19:99:219,0,389
17    38172192    rs2227324    G    A    162.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356271    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
17    38172452    rs2071370    T    C    162.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356271    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:195,15,0
17    38172942    rs2227338    A    G    1154.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.26;MQ0=0;QD=32.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356271    GT:AD:DP:GQ:PL    1/1:0,36:36:96.27:1187,96,0
17    38172973    rs5820317    A    AG    1467.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=150.1177;IndelType=I;MQ=60.6;MQ0=0;QD=43.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356271    GT:AD:DP:GQ:PL    1/1:1,32:34:96.33:1510,96,0
17    38173143    rs25645    G    A    110.07    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.015;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.455;QD=4.79;ReadPosRankSum=0.735;SNPEFF_AMINO_ACID_CHANGE=L149;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38173048_38173310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394148    GT:AD:DP:GQ:PL    0/1:17,6:23:99:140,0,584
17    38175561    rs709591    T    A    37.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=9.5;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225474    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:68,0,30
17    38176256    rs2270401    A    T    91.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225474    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    38176476    rs9899955    A    G    193.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225474    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:226,18,0
17    38178149    rs2302776    A    G    257.33    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.047;DB;DP=23;Dels=0.0;FS=2.291;HRun=1;HaplotypeScore=1.7608;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=11.19;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225474    GT:AD:DP:GQ:PL    0/1:11,12:23:99:287,0,340
17    38179290    rs4794824    G    A    84.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=21.2;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495586    GT:AD:DP:GQ:PL    0/1:1,3:4:12.66:115,0,13
17    38179492    rs2302777    A    G    205.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=12.82;ReadPosRankSum=-2.153;SNPEFF_AMINO_ACID_CHANGE=I185;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38179384_38179648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000501516    GT:AD:DP:GQ:PL    0/1:8,8:16:99:235,0,215
17    38179667    rs2302778    A    G    364.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495586    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:398,30,0
17    38182229    rs9916158    G    T    74.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495586    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:107,9,0
17    38183090    rs2302774    G    T    210.54    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.896;QD=16.2;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356271    GT:AD:DP:GQ:PL    0/1:5,8:13:99:241,0,118
17    38184360    rs117331478    G    T    90.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=11.35;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428757    GT:AD:DP:GQ:PL    0/1:3,5:8:55.78:121,0,56
17    38188419    rs3935281    C    T    574.32    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=4.881;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.787;QD=16.89;ReadPosRankSum=0.962;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428757    GT:AD:DP:GQ:PL    0/1:14,20:34:99:604,0,368
17    38188844    rs7502514    A    G    350.89    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.505;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=57.66;MQ0=0;MQRankSum=-0.536;QD=17.54;ReadPosRankSum=0.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428757    GT:AD:DP:GQ:PL    0/1:6,14:20:99:381,0,192
17    38189049    rs4072639    G    A    401.53    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.312;DB;DP=25;Dels=0.0;FS=3.128;HRun=0;HaplotypeScore=0.9159;MQ=59.07;MQ0=0;MQRankSum=-0.027;QD=16.06;ReadPosRankSum=-1.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479829    GT:AD:DP:GQ:PL    0/1:11,14:25:99:432,0,384
17    38189055    rs3935280    A    G    259.23    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=21;Dels=0.0;FS=6.69;HRun=0;HaplotypeScore=0.9159;MQ=58.89;MQ0=0;MQRankSum=-0.88;QD=12.34;ReadPosRankSum=-0.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479829    GT:AD:DP:GQ:PL    0/1:11,10:21:99:289,0,370
17    38192137    rs11078935    T    G    187.34    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.423;QD=11.71;ReadPosRankSum=-0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MED24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356271    GT:AD:DP:GQ:PL    0/1:9,7:16:99:217,0,288
17    38251385    .    A    AT    383.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.715;DP=20;FS=0.0;HRun=0;HaplotypeScore=61.1801;IndelType=I;MQ=58.22;MQ0=0;MQRankSum=0.041;QD=19.19;ReadPosRankSum=-0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264637    GT:AD:DP:GQ:PL    0/1:10,10:20:99:423,0,321
17    38251657    rs72836608    C    A    155.24    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=9.7;ReadPosRankSum=0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264637    GT:AD:DP:GQ:PL    0/1:9,7:16:99:185,0,296
17    38252667    rs939346    G    A    860.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=58.15;MQ0=0;QD=26.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264637    GT:AD:DP:GQ:PL    1/1:0,32:32:78.21:893,78,0
17    38253228    rs2102928    T    C    193.85    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=2.35;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=10.2;ReadPosRankSum=-1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264637    GT:AD:DP:GQ:PL    0/1:10,9:19:99:224,0,295
17    38324766    rs67311717    AT    A    210.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=4;HaplotypeScore=33.7951;IndelType=D;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474190    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:252,21,0
17    38324788    rs41275668    A    G    209.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474190    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
17    38420605    .    AG    A    41.50    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DP=15;FS=0.0;HRun=1;HaplotypeScore=228.9883;IndelType=D;MQ=44.14;MQ0=0;MQRankSum=-2.511;QD=2.77;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323571    GT:AD:DP:GQ:PL    0/1:4,11:15:63.45:81,0,63
17    38556770    rs471692    T    C    3130.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269577    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3163,229,0
17    38563710    rs558068    C    G    544.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269577    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:577,45,0
17    38568249    rs2715557    C    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269577    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    38572366    rs2586112    G    A    1498.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269577    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1532,120,0
17    38609187    rs1009727    G    A    599.89    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=3.096;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;MQRankSum=-1.211;QD=11.32;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269593    GT:AD:DP:GQ:PL    0/1:30,23:53:99:630,0,730
17    38609207    rs1009728    T    C    662.73    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.783;DB;DP=64;Dels=0.0;FS=2.221;HRun=1;HaplotypeScore=0.9665;MQ=58.91;MQ0=0;MQRankSum=-0.043;QD=10.36;ReadPosRankSum=0.838;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269593    GT:AD:DP:GQ:PL    0/1:37,27:64:99:693,0,1097
17    38609431    rs5820347    G    GAC    349.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=27.0191;IndelType=I;MQ=55.66;MQ0=0;QD=31.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269593    GT:AD:DP:GQ:PL    1/1:3,8:11:24.08:392,24,0
17    38636825    rs17557153    C    A    117.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254051    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
17    38638251    rs627857    C    T    140.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254051    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:173,15,0
17    38788348    rs11654834    C    T    199.24    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.49;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=10.49;ReadPosRankSum=-0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481231    GT:AD:DP:GQ:PL    0/1:10,9:19:99:229,0,363
17    38813824    rs8068721    G    A    372.50    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.152;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.99;MQ=59.17;MQ0=0;MQRankSum=-0.276;QD=13.3;ReadPosRankSum=1.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394049    GT:AD:DP:GQ:PL    0/1:15,13:28:99:402,0,531
17    38813828    rs68024952    G    GT    246.79    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=4.188;DB;DP=27;FS=1.58;HRun=8;HaplotypeScore=106.3358;IndelType=I;MQ=59.14;MQ0=0;MQRankSum=1.505;QD=9.14;ReadPosRankSum=1.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394049    GT:AD:DP:GQ:PL    0/1:16,10:27:99:286,0,310
17    38816526    rs917593    A    G    504.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.024;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3607;MQ=59.23;MQ0=0;MQRankSum=-0.054;QD=16.83;ReadPosRankSum=-0.862;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394049    GT:AD:DP:GQ:PL    0/1:12,18:30:99:535,0,225
17    38816595    rs2008469    T    C    46.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=5.75;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394049    GT:AD:DP:GQ:PL    0/1:4,4:8:76.01:76,0,146
17    38854406    rs2429549    G    A    236.79    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.216;QD=11.84;ReadPosRankSum=0.76;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264651    GT:AD:DP:GQ:PL    0/1:11,9:20:99:267,0,391
17    38855772    rs2462961    T    C    1984.22    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.822;DB;DP=152;Dels=0.0;FS=2.917;HRun=0;HaplotypeScore=1.9454;MQ=59.24;MQ0=0;MQRankSum=2.711;QD=13.05;ReadPosRankSum=-1.613;SNPEFF_AMINO_ACID_CHANGE=K429E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38855696_38855913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264651    GT:AD:DP:GQ:PL    0/1:75,77:152:99:2014,0,2202
17    38856662    rs887376    T    C    2048.08    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.298;DB;DP=145;Dels=0.0;FS=4.156;HRun=0;HaplotypeScore=0.9998;MQ=59.36;MQ0=0;MQRankSum=-2.095;QD=14.12;ReadPosRankSum=-2.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264651    GT:AD:DP:GQ:PL    0/1:58,86:145:99:2078,0,1701
17    38857446    rs874889    C    A    715.43    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.918;DB;DP=58;Dels=0.0;FS=12.236;HRun=1;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-0.12;QD=12.33;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=M267I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38857392_38857548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264651    GT:AD:DP:GQ:PL    0/1:28,30:58:99:745,0,859
17    38858134    rs11309872    CA    C    533.45    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=4.377;DB;DP=34;FS=1.5;HRun=1;HaplotypeScore=106.8392;IndelType=D;MQ=59.64;MQ0=0;MQRankSum=0.847;QD=15.69;ReadPosRankSum=1.495;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_38858103_38858185;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT24;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000264651    GT:AD:DP:GQ:PL    0/1:18,16:34:99:572,0,698
17    38905477    rs10491127    T    G    2424.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312150    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2458,184,0
17    38909904    rs12950911    T    C    102.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.75;MQ0=0;MQRankSum=-0.717;QD=9.32;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312150    GT:AD:DP:GQ:PL    0/1:6,5:11:99:133,0,201
17    38910811    rs34344021    G    T    414.56    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=15;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.65;QD=27.64;ReadPosRankSum=0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312150    GT:AD:DP:GQ:PL    0/1:3,12:15:75.75:445,0,76
17    38911212    rs12951078    G    A    1892.90    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=4.651;DB;DP=134;Dels=0.0;FS=2.249;HRun=0;HaplotypeScore=3.3292;MQ=59.48;MQ0=0;MQRankSum=0.566;QD=14.13;ReadPosRankSum=0.826;SNPEFF_AMINO_ACID_CHANGE=N104;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38911095_38911584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312150    GT:AD:DP:GQ:PL    0/1:72,62:134:99:1923,0,2175
17    38911363    rs12951399    G    A    1343.86    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.989;DB;DP=77;Dels=0.0;FS=13.674;HRun=1;HaplotypeScore=4.6262;MQ=59.7;MQ0=0;MQRankSum=-0.375;QD=17.45;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=S54L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38911095_38911584;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312150    GT:AD:DP:GQ:PL    0/1:34,43:77:99:1374,0,984
17    38922718    rs35253595    TTC    T    565.80    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=4.5;DB;DP=37;FS=2.27;HRun=0;HaplotypeScore=121.6901;IndelType=D;MQ=60.58;MQ0=0;MQRankSum=0.919;QD=15.29;ReadPosRankSum=0.317;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335552    GT:AD:DP:GQ:PL    0/1:18,19:37:99:605,0,718
17    38925099    rs10710900    GT    G    56.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=18;FS=0.0;HRun=15;HaplotypeScore=116.6305;IndelType=D;MQ=59.32;MQ0=0;MQRankSum=0.312;QD=3.13;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335552    GT:AD:DP:GQ:PL    0/1:9,9:18:95.32:95,0,120
17    38926219    rs151150098    G    A    1858.11    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=3.662;DB;DP=139;Dels=0.0;FS=0.633;HRun=0;HaplotypeScore=1.9545;MQ=59.7;MQ0=0;MQRankSum=-0.693;QD=13.37;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=N279;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38926213_38926374;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335552    GT:AD:DP:GQ:PL    0/1:79,60:139:99:1888,0,2312
17    38934118    rs2286648    C    G    180.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=18.01;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301656    GT:AD:DP:GQ:PL    0/1:4,6:10:99:210,0,133
17    38935812    rs981684    A    G    472.57    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.071;DB;DP=34;Dels=0.0;FS=1.5;HRun=1;HaplotypeScore=0.6651;MQ=58.9;MQ0=0;MQRankSum=-0.162;QD=13.9;ReadPosRankSum=-0.09;SNPEFF_AMINO_ACID_CHANGE=I305T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38935754_38935879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301656    GT:AD:DP:GQ:PL    0/1:18,16:34:99:503,0,528
17    38935876    rs17558532    C    T    205.11    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=22;Dels=0.0;FS=10.263;HRun=0;HaplotypeScore=3.9323;MQ=58.29;MQ0=0;MQRankSum=0.033;QD=9.32;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=A284T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38935754_38935879;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301656    GT:AD:DP:GQ:PL    0/1:12,10:22:99:235,0,320
17    38936659    rs17558560    C    T    195.93    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.695;DB;DP=24;Dels=0.0;FS=3.834;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=8.16;ReadPosRankSum=-1.854;SNPEFF_AMINO_ACID_CHANGE=G193S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38936552_38936708;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301656    GT:AD:DP:GQ:PL    0/1:13,11:24:99:226,0,399
17    38938216    rs17473777    T    G    97.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=16.25;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301656    GT:AD:DP:GQ:PL    0/1:2,4:6:55.39:128,0,55
17    38938222    rs72824004    T    C    57.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=6.42;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRT27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301656    GT:AD:DP:GQ:PL    0/1:6,3:9:87.81:88,0,186
17    38950272    rs2250671    T    C    3327.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=30.53;SNPEFF_AMINO_ACID_CHANGE=T335;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38950081_38950298;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306658    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3328,271,0
17    38953540    rs3813038    A    G    1140.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=30.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306658    GT:AD:DP:GQ:PL    1/1:0,37:37:90.26:1174,90,0
17    38954687    rs9914044    C    T    1176.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306658    GT:AD:DP:GQ:PL    1/1:0,37:37:90.30:1210,90,0
17    38955173    rs7222207    G    A    928.59    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.849;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.333;QD=11.05;ReadPosRankSum=0.996;SNPEFF_AMINO_ACID_CHANGE=L177;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38955169_38955251;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306658    GT:AD:DP:GQ:PL    0/1:51,32:84:99:959,0,1595
17    38955274    rs7224150    A    C    718.59    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-0.71;QD=11.23;ReadPosRankSum=0.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306658    GT:AD:DP:GQ:PL    0/1:36,28:64:99:749,0,1102
17    38955577    rs67828790    TTATC    T    436.14    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=74.0243;IndelType=D;MQ=57.76;MQ0=0;MQRankSum=-1.164;QD=27.26;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306658    GT:AD:DP:GQ:PL    0/1:7,9:16:99:475,0,509
17    38955991    rs7209228    C    T    962.64    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.701;DB;DP=78;Dels=0.0;FS=1.937;HRun=0;HaplotypeScore=1.5762;MQ=59.41;MQ0=0;MQRankSum=0.762;QD=12.34;ReadPosRankSum=-0.762;SNPEFF_AMINO_ACID_CHANGE=G52D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38955696_38956211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306658    GT:AD:DP:GQ:PL    0/1:42,36:78:99:993,0,1240
17    38974612    rs1132367    T    C    210.52    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.377;QD=19.14;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459776    GT:AD:DP:GQ:PL    0/1:3,8:11:93.90:241,0,94
17    38975328    rs17855579    G    A    106.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=21.35;SNPEFF_AMINO_ACID_CHANGE=H487Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38975039_38975413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269576    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:139,12,0
17    38976716    rs1799915    C    T    998.76    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=54;Dels=0.0;FS=7.686;HRun=0;HaplotypeScore=1.565;MQ=59.57;MQ0=0;MQRankSum=-0.295;QD=18.5;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269576    GT:AD:DP:GQ:PL    0/1:25,29:54:99:1029,0,802
17    38976978    rs6503559    C    A    231.03    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.064;QD=11.55;ReadPosRankSum=-0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269576    GT:AD:DP:GQ:PL    0/1:11,9:20:99:261,0,397
17    38976998    rs1799873    G    A    697.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269576    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:731,57,0
17    38978462    rs77919366    C    T    122.24    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.398;DB;DP=21;Dels=0.0;FS=1.999;HRun=0;HaplotypeScore=2.6552;MQ=57.77;MQ0=0;MQRankSum=0.978;QD=5.82;ReadPosRankSum=-0.109;SNPEFF_AMINO_ACID_CHANGE=G126S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38978211_38978847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269576    GT:AD:DP:GQ:PL    0/1:13,8:21:99:152,0,394
17    38978536    rs4261597    A    C    1914.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.22;MQ0=0;QD=32.45;SNPEFF_AMINO_ACID_CHANGE=I101S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38978211_38978847;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269576    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1948,150,0
17    38990679    rs2469839    T    A    377.43    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.603;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=-0.134;QD=17.16;ReadPosRankSum=-0.334;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_38990634_38992522;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301665    GT:AD:DP:GQ:PL    0/1:9,13:22:99:407,0,297
17    38990834    rs2240078    G    C    1260.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;DB;DP=45;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7884;MQ=59.49;MQ0=0;MQRankSum=0.5;QD=28.02;ReadPosRankSum=0.269;SNPEFF_AMINO_ACID_CHANGE=V22;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38990634_38992522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM99;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301665    GT:AD:DP:GQ:PL    1/1:1,44:45:65.33:1294,65,0
17    38991032    rs6694    T    A    3671.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=G88;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38990634_38992522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM99;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301665    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3671,280,0
17    38991052    rs1044806    T    G    1012.82    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.48;DB;DP=109;Dels=0.0;FS=2.58;HRun=0;HaplotypeScore=2.4669;MQ=59.36;MQ0=0;MQRankSum=-0.572;QD=9.29;ReadPosRankSum=-1.554;SNPEFF_AMINO_ACID_CHANGE=L95R;SNPEFF_CODON_CHANGE=cTt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38990634_38992522;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301665    GT:AD:DP:GQ:PL    0/1:59,50:109:99:1043,0,1942
17    38991053    rs3169915    T    A    1085.83    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.382;DB;DP=106;Dels=0.0;FS=3.685;HRun=0;HaplotypeScore=2.4669;MQ=59.35;MQ0=0;MQRankSum=-0.042;QD=10.24;ReadPosRankSum=-1.725;SNPEFF_AMINO_ACID_CHANGE=L95;SNPEFF_CODON_CHANGE=ctT/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_38990634_38992522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM99;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301665    GT:AD:DP:GQ:PL    0/1:57,49:106:99:1116,0,1869
17    39018961    rs9894091    A    G    401.12    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2913;MQ=59.2;MQ0=0;MQRankSum=0.546;QD=13.83;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251643    GT:AD:DP:GQ:PL    0/1:14,15:29:99:431,0,463
17    39020861    rs916929    T    C    66.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.26;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251643    GT:AD:DP:GQ:PL    0/1:5,3:8:96.04:96,0,186
17    39021015    rs33955437    G    GA    363.40    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.295;DB;DP=38;FS=5.209;HRun=10;HaplotypeScore=97.9544;IndelType=I;MQ=60.85;MQ0=0;MQRankSum=-0.239;QD=9.56;ReadPosRankSum=0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251643    GT:AD:DP:GQ:PL    0/1:19,18:38:99:402,0,365
17    39240259    rs149574346    C    T    123.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=45.11;MQ0=0;MQRankSum=0.731;QD=24.79;ReadPosRankSum=0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391417    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:156,12,0
17    39240426    rs11658607    G    A    1466.31    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.181;DB;DP=102;Dels=0.0;FS=4.117;HRun=3;HaplotypeScore=0.0;MQ=50.58;MQ0=5;MQRankSum=-2.769;QD=14.38;ReadPosRankSum=1.219;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391417    GT:AD:DP:GQ:PL    0/1:39,63:102:99:1496,0,1164
17    39240504    rs11655310    A    G    1069.82    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.621;DB;DP=109;Dels=0.0;FS=3.905;HRun=1;HaplotypeScore=12.3314;MQ=49.62;MQ0=9;MQRankSum=-5.144;QD=9.81;ReadPosRankSum=0.805;SNPEFF_AMINO_ACID_CHANGE=S16G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39240459_39241396;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391417    GT:AD:DP:GQ:PL    0/1:53,55:109:99:1100,0,1679
17    39240511    rs383835    A    T    1048.56    HaplotypeScoreFilter13    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.052;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.1632;MQ=50.0;MQ0=10;MQRankSum=-3.067;QD=9.12;ReadPosRankSum=0.474;SNPEFF_AMINO_ACID_CHANGE=D18V;SNPEFF_CODON_CHANGE=gAc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39240459_39241396;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391417    GT:AD:DP:GQ:PL    0/1:69,44:115:99:1079,0,1804
17    39240661    rs11650484    C    G    730.56    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.072;DB;DP=86;Dels=0.0;FS=2.0;HRun=0;HaplotypeScore=0.0;MQ=50.95;MQ0=2;MQRankSum=-2.177;QD=8.49;ReadPosRankSum=2.148;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000377734    GT:AD:DP:GQ:PL    0/1:51,35:86:99:761,0,1533
17    39240781    .    CCTGCTGCCGCCCCAG    C    943    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DP=28;FS=9.89;HRun=0;HaplotypeScore=462.0723;IndelType=D;MQ=36.29;MQ0=1;MQRankSum=0.556;QD=26.19;ReadPosRankSum=1.22;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_39240687_39240782;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000377734    GT:AD:DP:GQ:PL    0/1:28,8:28:99:982,0,400
17    39241116    rs2320192    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377734    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    39253685    rs7212517    A    C    239.23    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.11;MQ0=0;MQRankSum=-1.774;QD=18.4;ReadPosRankSum=-1.774;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC100808.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440582    GT:AD:DP:GQ:PL    0/1:4,9:13:99:269,0,127
17    39253749    rs72625994    T    C    503.12    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=1.181;DB;DP=28;Dels=0.0;FS=1.796;HRun=0;HaplotypeScore=0.0;MQ=48.24;MQ0=0;MQRankSum=-1.623;QD=17.97;ReadPosRankSum=1.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC100808.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440582    GT:AD:DP:GQ:PL    0/1:9,19:28:99:533,0,213
17    39253815    rs77163010    G    A    363.60    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=44;Dels=0.0;FS=14.542;HRun=0;HaplotypeScore=0.0;MQ=41.95;MQ0=1;MQRankSum=-2.047;QD=8.26;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=C144;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39253779_39253908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:24,20:44:99:394,0,599
17    39253835    rs72625995    C    T    306.48    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.419;DB;DP=44;Dels=0.0;FS=18.455;HRun=1;HaplotypeScore=0.0;MQ=41.92;MQ0=1;MQRankSum=-2.859;QD=6.97;ReadPosRankSum=0.928;SNPEFF_AMINO_ACID_CHANGE=A138T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39253779_39253908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:25,19:44:99:336,0,587
17    39253886    rs78550130    G    C    185.41    MQFilter40    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.681;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=34.59;MQ0=3;MQRankSum=-3.814;QD=4.21;ReadPosRankSum=-0.944;SNPEFF_AMINO_ACID_CHANGE=L121V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39253779_39253908;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:21,23:44:99:215,0,445
17    39253956    rs139720993    G    A    84.78    MQFilter40    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.735;MQ=32.34;MQ0=3;MQRankSum=-2.158;QD=2.36;ReadPosRankSum=-1.508;SNPEFF_AMINO_ACID_CHANGE=P112;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39253954_39254078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:22,14:36:99:115,0,635
17    39253960    rs144672535    C    T    118.28    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=40;Dels=0.0;FS=1.637;HRun=0;HaplotypeScore=4.3133;MQ=32.85;MQ0=3;MQRankSum=-2.404;QD=2.96;ReadPosRankSum=-1.811;SNPEFF_AMINO_ACID_CHANGE=R111H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39253954_39254078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:24,16:40:99:148,0,601
17    39253969    rs147906218    T    G    224.01    MQFilter40    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=43;Dels=0.0;FS=3.784;HRun=1;HaplotypeScore=2.4458;MQ=36.06;MQ0=3;MQRankSum=-2.291;QD=5.21;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=N108T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39253954_39254078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:23,20:43:99:254,0,642
17    39254037    .    G    A    110.18    QDFilter2    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.289;DP=85;Dels=0.0;FS=3.386;HRun=0;HaplotypeScore=0.0;MQ=41.9;MQ0=6;MQRankSum=-4.608;QD=1.3;ReadPosRankSum=0.258;SNPEFF_AMINO_ACID_CHANGE=C100;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39253233_39254393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333822    GT:AD:DP:GQ:PL    0/1:60,25:85:99:140,0,1479
17    39254061    rs79632137    A    G    178.84    HaplotypeScoreFilter13    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=1.413;DB;DP=86;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=16.4994;MQ=42.67;MQ0=4;MQRankSum=-4.692;QD=2.08;ReadPosRankSum=2.092;SNPEFF_AMINO_ACID_CHANGE=P77;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39253954_39254078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:60,26:86:99:209,0,1505
17    39254126    .    C    T    33.35    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=0.728;DP=56;Dels=0.0;FS=4.067;HRun=0;HaplotypeScore=7.7659;MQ=51.79;MQ0=0;MQRankSum=-2.289;QD=0.6;ReadPosRankSum=-1.892;SNPEFF_AMINO_ACID_CHANGE=V71M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39254124_39254336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:47,8:56:63.34:63,0,1207
17    39254335    .    A    AT    584.62    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.356;DP=33;FS=1.523;HRun=1;HaplotypeScore=83.2755;IndelType=I;MQ=58.38;MQ0=1;MQRankSum=-0.32;QD=17.19;ReadPosRankSum=-0.132;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_39254124_39254336;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000332991    GT:AD:DP:GQ:PL    0/1:18,16:33:99:624,0,527
17    39254444    rs6416913    T    C    535.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC100808.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440582    GT:AD:DP:GQ:PL    1/1:0,15:15:45.11:568,45,0
17    39258027    rs7503699    G    A    651.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.63;SNPEFF_AMINO_ACID_CHANGE=H145;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39257754_39258461;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC100808.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440582    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:685,51,0
17    39258221    rs141088836    G    A    549.65    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.97;MQ0=0;MQRankSum=-0.679;QD=11.95;ReadPosRankSum=-0.302;SNPEFF_AMINO_ACID_CHANGE=P81S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39257754_39258461;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC100808.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440582    GT:AD:DP:GQ:PL    0/1:25,21:46:99:580,0,631
17    39258495    rs168397    G    A    369.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377734    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:403,30,0
17    39261560    rs349792    T    A    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.87;MQ0=3;QD=12.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377734    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:134,12,0
17    39261608    rs349791    G    A    662.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=27.13;MQ0=4;QD=23.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377734    GT:AD:DP:GQ:PL    1/1:0,28:28:63.15:696,63,0
17    39261611    rs11654665    G    A    774.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=28.14;MQ0=4;QD=24.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377734    GT:AD:DP:GQ:PL    1/1:0,31:32:72.19:807,72,0
17    39261933    rs7207685    C    T    1202.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.49;MQ0=10;QD=21.47;SNPEFF_AMINO_ACID_CHANGE=A98V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39261641_39261961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333994    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1235,111,0
17    39261949    rs7212474    T    C    1240.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.53;MQ0=9;QD=23.86;SNPEFF_AMINO_ACID_CHANGE=T103;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39261641_39261961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333994    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1273,114,0
17    39274069    rs349771    G    C    904.18    MQFilter40    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=2.86;DB;DP=54;Dels=0.0;FS=13.936;HRun=1;HaplotypeScore=0.734;MQ=38.96;MQ0=7;MQRankSum=2.595;QD=16.74;ReadPosRankSum=-0.511;SNPEFF_AMINO_ACID_CHANGE=R167G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39273433_39274606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391413    GT:AD:DP:GQ:PL    0/1:6,48:54:28.01:934,0,28
17    39274087    rs141357429    G    C    45.42    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.856;DB;DP=53;Dels=0.0;FS=1.684;HRun=0;HaplotypeScore=0.0;MQ=42.39;MQ0=6;MQRankSum=-1.924;QD=0.86;ReadPosRankSum=-0.169;SNPEFF_AMINO_ACID_CHANGE=L161V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39273433_39274606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391413    GT:AD:DP:GQ:PL    0/1:45,8:53:75.41:75,0,1086
17    39274157    rs145503152    G    A    62.95    QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=0.999;DB;DP=57;Dels=0.0;FS=15.062;HRun=0;HaplotypeScore=6.2292;MQ=48.71;MQ0=3;MQRankSum=-2.778;QD=1.1;ReadPosRankSum=0.424;SNPEFF_AMINO_ACID_CHANGE=P137;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39273433_39274606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391413    GT:AD:DP:GQ:PL    0/1:47,10:57:92.94:93,0,1389
17    39274235    rs11654403    G    A    288.59    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.18;DB;DP=49;Dels=0.0;FS=1.342;HRun=0;HaplotypeScore=1.367;MQ=51.22;MQ0=3;MQRankSum=1.191;QD=5.89;ReadPosRankSum=-0.714;SNPEFF_AMINO_ACID_CHANGE=R111;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39273433_39274606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391413    GT:AD:DP:GQ:PL    0/1:33,15:49:99:319,0,856
17    39274364    rs425784    T    G    161.65    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=76;Dels=0.0;FS=1.316;HRun=0;HaplotypeScore=0.7887;MQ=51.43;MQ0=3;MQRankSum=-5.811;QD=2.13;ReadPosRankSum=2.692;SNPEFF_AMINO_ACID_CHANGE=R68S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39273433_39274606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391413    GT:AD:DP:GQ:PL    0/1:57,19:76:99:192,0,1707
17    39274518    rs9897031    C    T    1937.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=R17Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39273433_39274606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391413    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1970,153,0
17    39280487    rs6503601    A    C    671.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=35.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394014    GT:AD:DP:GQ:PL    1/1:0,19:19:57.14:704,57,0
17    39296016    rs937403    A    C    130.39    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=10.03;ReadPosRankSum=-0.212;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345847    GT:AD:DP:GQ:PL    0/1:8,5:13:99:160,0,300
17    39296254    rs72483263    C    T    370.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.042;DB;DP=64;Dels=0.0;FS=1.37;HRun=0;HaplotypeScore=1.9932;MQ=54.15;MQ0=0;MQRankSum=-4.416;QD=5.79;ReadPosRankSum=1.445;SNPEFF_AMINO_ACID_CHANGE=P162;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39295685_39296739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345847    GT:AD:DP:GQ:PL    0/1:42,21:64:99:400,0,937
17    39296361    rs146882220    A    G    296.26    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=4.434;DB;DP=56;Dels=0.0;FS=1.314;HRun=3;HaplotypeScore=0.0;MQ=55.37;MQ0=1;MQRankSum=-1.594;QD=5.29;ReadPosRankSum=2.193;SNPEFF_AMINO_ACID_CHANGE=S127P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39295685_39296739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345847    GT:AD:DP:GQ:PL    0/1:41,15:56:99:326,0,1181
17    39305775    rs146438235    T    TGGCAGCAGCTGGGGC    1920.52    PASS    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=42;FS=7.791;HRun=0;HaplotypeScore=434.82;IndelType=I;MQ=52.81;MQ0=0;MQRankSum=-2.677;QD=45.73;ReadPosRankSum=-0.783;SNPEFF_AMINO_ACID_CHANGE=-82APAAA;SNPEFF_CODON_CHANGE=-/GCCCCAGCTGCTGCC;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_17_39305178_39306054;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343246    GT:AD:DP:GQ:PL    0/1:29,10:42:99:1960,0,1871
17    39305956    rs1497383    G    A    900.78    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=72;Dels=0.0;FS=0.896;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.421;QD=12.51;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=R22C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39305178_39306054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343246    GT:AD:DP:GQ:PL    0/1:39,33:72:99:931,0,1073
17    39324139    .    T    TGCAGCAGGTGGTCAG    1557.24    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.222;DP=34;FS=24.419;HRun=0;HaplotypeScore=331.6077;IndelType=I;MQ=45.86;MQ0=0;MQRankSum=-3.13;QD=35.39;ReadPosRankSum=-1.323;SNPEFF_AMINO_ACID_CHANGE=C95C*PPAA;SNPEFF_CODON_CHANGE=tgc/tgCTGACCACCTGCTGCc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_17_39323484_39324424;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391356    GT:AD:DP:GQ:PL    0/1:36,7:34:99:1596,0,2536
17    39333956    rs377518    T    C    1321.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=37.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1355,99,0
17    39334133    rs389784    T    C    2105.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=33.42;SNPEFF_AMINO_ACID_CHANGE=Y212C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39334006_39334362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2139,162,0
17    39334456    rs493514    G    A    2134.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=59.27;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2168,172,0
17    39334635    rs406860    G    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    39340430    rs453545    A    G    167.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
17    39340474    rs5820392    ATGC    A    247.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=48.3451;IndelType=D;MQ=53.03;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:2,5:7:18.06:289,18,0
17    39340597    rs452216    G    A    1785.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1818,135,0
17    39340707    rs398825    C    T    3209.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=A115T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39340354_39340804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334190    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3243,253,0
17    39340795    .    ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG    A    3363.32    PASS    AC=2;AF=1.00;AN=2;DP=65;FS=0.0;HRun=0;HaplotypeScore=3382.3378;IndelType=D;MQ=66.31;MQ0=0;QD=50.96;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334190    GT:AD:DP:GQ:PL    1/1:8,58:65:99:3363,159,0
17    39340910    rs2320231    T    C    1270.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.36;MQ0=0;QD=27.62;SNPEFF_AMINO_ACID_CHANGE=H62R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39340690_39341013;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1304,108,0
17    39341158    rs452531    G    A    493.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP4-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458321    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:527,39,0
17    39346139    rs61743546    A    G    1741.80    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.314;DB;DP=129;Dels=0.0;FS=5.721;HRun=0;HaplotypeScore=2.6219;MQ=54.92;MQ0=1;MQRankSum=2.122;QD=13.5;ReadPosRankSum=-0.394;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_17_39346139_39346891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000398470    GT:AD:DP:GQ:PL    0/1:62,67:129:99:1772,0,1868
17    39346518    rs238824    T    C    1948.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.7;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=I127T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39346139_39346891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398470    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1982,159,0
17    39346595    rs11283848    T    TGCTGTGGGTCCAGCTGCTGCCAGCCTA    14405.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.0;HRun=0;HaplotypeScore=1249.6204;IndelType=I;MQ=44.57;MQ0=0;QD=175.68;SNPEFF_AMINO_ACID_CHANGE=C153CCGSSCCQPS;SNPEFF_CODON_CHANGE=tgc/tGCTGTGGGTCCAGCTGCTGCCAGCCTAgc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_17_39346139_39346891;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398470    GT:AD:DP:GQ:PL    1/1:25,35:82:99:14406,178,0
17    39382884    rs1817968    G    A    740.79    MQFilter40    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.759;DB;DP=250;DS;Dels=0.0;FS=1.477;HRun=2;HaplotypeScore=4.8874;MQ=30.37;MQ0=48;MQRankSum=0.241;QD=2.96;ReadPosRankSum=-2.688;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377721    GT:AD:DP:GQ:PL    0/1:183,67:250:99:771,0,3523
17    39382942    rs11078986    C    A    2045.41    MQFilter40    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.784;DB;DP=230;DS;Dels=0.0;FS=0.598;HRun=0;HaplotypeScore=3.9206;MQ=27.36;MQ0=44;MQRankSum=-1.02;QD=8.89;ReadPosRankSum=-0.6;SNPEFF_AMINO_ACID_CHANGE=T12;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39382900_39383904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377721    GT:AD:DP:GQ:PL    0/1:106,124:230:99:2075,0,1840
17    39383012    rs9903833    C    T    2942.01    MQFilter40    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.816;DB;DP=197;DS;Dels=0.0;FS=8.001;HRun=0;HaplotypeScore=3.443;MQ=33.55;MQ0=24;MQRankSum=5.477;QD=14.93;ReadPosRankSum=1.672;SNPEFF_AMINO_ACID_CHANGE=P36S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39382900_39383904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377721    GT:AD:DP:GQ:PL    0/1:77,119:197:99:2972,0,639
17    39383027    rs71371478    G    T    99.91    MQFilter40;QDFilter2    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.359;DB;DP=184;Dels=0.0;FS=7.249;HRun=0;HaplotypeScore=0.8667;MQ=37.3;MQ0=22;MQRankSum=-5.853;QD=0.54;ReadPosRankSum=-1.494;SNPEFF_AMINO_ACID_CHANGE=A41S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39382900_39383904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377721    GT:AD:DP:GQ:PL    0/1:127,57:184:99:130,0,3350
17    39383073    rs9902235    G    C    4464.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.079;DB;DP=145;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7402;MQ=45.96;MQ0=4;MQRankSum=4.97;QD=30.79;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=C56S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39382900_39383904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377721    GT:AD:DP:GQ:PL    1/1:13,132:145:99:4464,349,0
17    39383335    rs238787    C    G    3609.63    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.483;DB;DP=189;Dels=0.0;FS=2.625;HRun=0;HaplotypeScore=2.9691;MQ=28.63;MQ0=46;MQRankSum=0.922;QD=19.1;ReadPosRankSum=-0.606;SNPEFF_AMINO_ACID_CHANGE=P127;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39383168_39383431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455970    GT:AD:DP:GQ:PL    1/1:21,167:189:99:3610,290,0
17    39388852    rs1860551    T    C    4955.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=44.95;MQ0=2;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=C33;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39388715_39389705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411528    GT:AD:DP:GQ:PL    1/1:0,156:156:99:4956,394,0
17    39394674    rs71383390    A    G    3646.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=182;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6722;MQ=33.08;MQ0=38;QD=20.03;SNPEFF_AMINO_ACID_CHANGE=N124S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39394297_39395256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254072    GT:AD:DP:GQ:PL    1/1:19,163:182:99:3646,330,0
17    39394729    rs146488039    C    A    1655.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.88;MQ0=79;QD=10.22;SNPEFF_AMINO_ACID_CHANGE=T142;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39394297_39395256;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254072    GT:AD:DP:GQ:PL    1/1:50,112:162:99:1689,153,0
17    39394755    rs141050869    C    A    1364.91    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DB;DP=166;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=15.9;MQ0=95;MQRankSum=0.956;QD=8.22;ReadPosRankSum=1.685;SNPEFF_AMINO_ACID_CHANGE=S151Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39394297_39395256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254072    GT:AD:DP:GQ:PL    1/1:62,104:166:99:1398,132,0
17    39394787    .    C    A    871.66    MQFilter40    AC=2;AF=1.00;AN=2;DP=142;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.96;MQ0=96;QD=6.14;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254072    GT:AD:DP:GQ:PL    1/1:61,81:142:84.17:905,84,0
17    39394790    .    T    C    774.22    MQFilter40    AC=2;AF=1.00;AN=2;DP=139;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=13.17;MQ0=98;QD=5.57;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254072    GT:AD:DP:GQ:PL    1/1:61,78:139:75.15:807,75,0
17    39394807    rs143369519    C    A    588.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.13;MQ0=92;QD=4.9;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254072    GT:AD:DP:GQ:PL    1/1:57,63:120:60.09:621,60,0
17    39394885    rs146764247    C    T    71.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.33;MQ0=26;QD=2.25;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254072    GT:AD:DP:GQ:PL    1/1:15,17:32:11.98:104,12,0
17    39405960    rs11655750    T    C    2339.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6168;MQ=20.86;MQ0=60;QD=14.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431129    GT:AD:DP:GQ:PL    1/1:0,164:165:99:2373,231,0
17    39406104    rs11655843    T    G    1655.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=23.39;MQ0=21;QD=17.62;SNPEFF_AMINO_ACID_CHANGE=V44;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39405939_39406904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334109    GT:AD:DP:GQ:PL    1/1:1,93:94:99:1689,159,0
17    39406409    rs2191379    C    A    5132.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.105;DB;DP=152;Dels=0.0;FS=4.28;HRun=0;HaplotypeScore=3.2429;MQ=57.89;MQ0=0;MQRankSum=1.29;QD=33.76;ReadPosRankSum=-1.081;SNPEFF_AMINO_ACID_CHANGE=S146Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39405939_39406904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334109    GT:AD:DP:GQ:PL    1/1:3,149:152:99:5132,360,0
17    39406447    rs3967754    A    G    4088.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DB;DP=128;Dels=0.0;FS=13.606;HRun=0;HaplotypeScore=1.7791;MQ=57.42;MQ0=0;MQRankSum=2.536;QD=31.94;ReadPosRankSum=1.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431129    GT:AD:DP:GQ:PL    1/1:3,125:128:99:4088,220,0
17    39406567    rs2270179    C    A    623.69    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=38.11;MQ0=1;MQRankSum=-1.733;QD=23.1;ReadPosRankSum=-0.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431129    GT:AD:DP:GQ:PL    1/1:1,26:27:26.16:657,26,0
17    39406589    rs4057758    A    G    399.97    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.14;MQ0=1;QD=22.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431129    GT:AD:DP:GQ:PL    1/1:0,18:18:39.08:433,39,0
17    39411483    rs12950999    G    T    786.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.11;MQ0=0;QD=29.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334109    GT:AD:DP:GQ:PL    1/1:0,27:27:66.17:819,66,0
17    39411507    rs9895563    A    C    1024.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.42;MQ0=2;QD=27.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334109    GT:AD:DP:GQ:PL    1/1:0,37:37:84.22:1057,84,0
17    39411670    .    T    TACCTGCTGCAGGACC    1167.32    PASS    AC=2;AF=1.00;AN=2;DP=51;FS=0.0;HRun=0;HaplotypeScore=522.8455;IndelType=I;MQ=38.47;MQ0=9;QD=14.41;SNPEFF_AMINO_ACID_CHANGE=-12TCCRT;SNPEFF_CODON_CHANGE=-/ACCTGCTGCAGGACC;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_17_39411636_39412616;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394008    GT:AD:DP:GQ:PL    1/1:44,28:51:57.08:1209,57,0
17    39412372    rs2007206    G    C    194.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.68;MQ0=0;QD=27.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431129    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:227,18,0
17    39421781    rs12938374    A    G    1313.37    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.02;MQ0=4;QD=27.94;SNPEFF_AMINO_ACID_CHANGE=Y51C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39421591_39422893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391355    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1346,111,0
17    39421886    rs12938692    A    G    267.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.31;MQ0=2;QD=22.33;SNPEFF_AMINO_ACID_CHANGE=Y86C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39421591_39422893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391355    GT:AD:DP:GQ:PL    1/1:0,12:12:27.07:301,27,0
17    39432007    rs78283750    A    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.81;MQ0=2;MQRankSum=0.731;QD=5.09;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=K20Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39431911_39432949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391354    GT:AD:DP:GQ:PL    1/1:1,6:7:6.02:67,6,0
17    39432017    rs4890107    C    T    94.49    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.06;MQ0=6;MQRankSum=0.751;QD=6.3;ReadPosRankSum=-0.751;SNPEFF_AMINO_ACID_CHANGE=T23I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39431911_39432949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391354    GT:AD:DP:GQ:PL    1/1:1,14:15:12.03:127,12,0
17    39432562    rs9893993    A    T    490.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP9-7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391354    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:524,39,0
17    39458765    rs1005197    A    G    2022.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.052;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=59.25;MQ0=0;MQRankSum=1.609;QD=36.12;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=S113;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39458078_39459103;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP29-1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391353    GT:AD:DP:GQ:PL    1/1:1,55:56:99:2056,122,0
17    39459167    rs1005196    G    A    299.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP16-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391352    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:333,24,0
17    39535859    rs2239710    A    G    1187.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5518;MQ=59.47;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=I238T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39535822_39535983;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394001    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1221,90,0
17    39580559    rs9916475    T    A    406.88    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=32;Dels=0.0;FS=2.991;HRun=0;HaplotypeScore=0.9999;MQ=59.28;MQ0=0;MQRankSum=1.548;QD=12.72;ReadPosRankSum=-1.322;SNPEFF_AMINO_ACID_CHANGE=S73C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39580284_39580775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225550    GT:AD:DP:GQ:PL    0/1:17,15:32:99:437,0,532
17    39580562    rs9916484    T    C    409.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=33;Dels=0.0;FS=1.376;HRun=0;HaplotypeScore=0.9999;MQ=59.3;MQ0=0;MQRankSum=-0.922;QD=12.4;ReadPosRankSum=-0.886;SNPEFF_AMINO_ACID_CHANGE=T72A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39580284_39580775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225550    GT:AD:DP:GQ:PL    0/1:18,15:33:99:439,0,552
17    39580660    rs9916724    T    C    667.05    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.411;DB;DP=48;Dels=0.0;FS=1.124;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=2.204;QD=13.9;ReadPosRankSum=0.155;SNPEFF_AMINO_ACID_CHANGE=N39S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39580284_39580775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225550    GT:AD:DP:GQ:PL    0/1:26,22:48:99:697,0,762
17    39580739    rs9910204    C    A    805.44    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DB;DP=52;Dels=0.0;FS=3.978;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.234;QD=15.49;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=G13C;SNPEFF_CODON_CHANGE=Ggt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39580284_39580775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225550    GT:AD:DP:GQ:PL    0/1:22,30:52:99:835,0,692
17    39593768    rs897416    A    G    404.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=S423P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39593529_39593793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:437,33,0
17    39593872    rs897415    A    G    250.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:284,21,0
17    39594185    rs4796789    T    C    122.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
17    39594204    rs2071613    T    A    95.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.15;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:128,9,0
17    39594679    rs7209968    A    G    416.63    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=30;Dels=0.0;FS=1.55;HRun=0;HaplotypeScore=3.1026;MQ=58.45;MQ0=0;MQRankSum=0.395;QD=13.89;ReadPosRankSum=0.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:14,16:30:99:447,0,420
17    39594934    rs76477035    AC    A    529.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.001;DB;DP=48;FS=6.374;HRun=8;HaplotypeScore=182.9768;IndelType=D;MQ=59.22;MQ0=0;MQRankSum=1.382;QD=11.03;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:6,24:48:99:568,0,170
17    39595116    rs9894668    G    T    1972.41    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.742;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=-0.17;QD=17.93;ReadPosRankSum=-0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:45,65:110:99:2002,0,1395
17    39595354    rs2071606    G    T    40.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.537;QD=6.8;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:3,3:6:64.60:71,0,65
17    39595356    rs2071605    T    G    35.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.406;QD=5.98;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:3,3:6:65.88:66,0,91
17    39595661    rs2071611    T    A    145.53    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.536;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8308;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=7.66;ReadPosRankSum=-0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:11,7:19:99:176,0,366
17    39596393    rs12601328    C    A    200.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.573;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.893;QD=11.77;ReadPosRankSum=-1.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:8,8:17:99:230,0,256
17    39596402    rs2071610    G    A    310.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=22;Dels=0.0;FS=10.16;HRun=0;HaplotypeScore=1.9158;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=14.13;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:12,10:22:99:341,0,265
17    39596538    rs2071609    C    T    425.49    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.919;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=20.26;ReadPosRankSum=0.616;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    0/1:8,13:21:99:455,0,274
17    39596611    rs1350046    T    C    1081.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=58.71;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246646    GT:AD:DP:GQ:PL    1/1:0,36:36:87.27:1115,87,0
17    39616274    rs72830035    A    T    188.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=12.53;ReadPosRankSum=-0.437;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:6,8:15:99:218,0,104
17    39616430    rs2604953    G    T    285.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.74;SNPEFF_AMINO_ACID_CHANGE=P427T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39616063_39616491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:319,24,0
17    39619078    rs2857258    G    A    293.92    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=3.397;DB;DP=35;Dels=0.0;FS=9.093;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.461;QD=8.4;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:22,13:35:99:324,0,679
17    39619093    rs2604954    G    A    328.68    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=42;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.441;QD=7.83;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=N402;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39619082_39619302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:22,20:42:99:359,0,636
17    39619094    rs2604955    T    C    409.75    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.5;DB;DP=41;Dels=0.0;FS=2.837;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.587;QD=9.99;ReadPosRankSum=-0.717;SNPEFF_AMINO_ACID_CHANGE=N402S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39619082_39619302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:21,20:41:99:440,0,651
17    39619186    rs2604956    G    C    483.46    PASS    AB=0.648;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.474;DB;DP=54;Dels=0.0;FS=2.534;HRun=0;HaplotypeScore=1.7621;MQ=59.57;MQ0=0;MQRankSum=-0.347;QD=8.95;ReadPosRankSum=-0.498;SNPEFF_AMINO_ACID_CHANGE=D371E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39619082_39619302;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:35,19:54:99:513,0,1065
17    39619219    rs2857257    G    A    546.49    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.349;DB;DP=58;Dels=0.0;FS=1.063;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.563;QD=9.42;ReadPosRankSum=-0.376;SNPEFF_AMINO_ACID_CHANGE=N360;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39619082_39619302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:38,20:58:99:576,0,1107
17    39619504    rs9909118    G    A    83.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
17    39619539    rs11649813    T    C    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
17    39620565    rs72830046    C    T    381.92    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.553;DB;DP=29;Dels=0.0;FS=8.202;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.06;QD=13.17;ReadPosRankSum=-0.599;SNPEFF_AMINO_ACID_CHANGE=R280H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39620534_39620695;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:14,15:29:99:412,0,384
17    39620733    rs2604958    G    C    187.89    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=17.08;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:5,6:11:99:218,0,173
17    39622068    rs2071561    G    T    566.54    PASS    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.006;DB;DP=65;Dels=0.0;FS=2.305;HRun=0;HaplotypeScore=0.9998;MQ=59.65;MQ0=0;MQRankSum=-0.699;QD=8.72;ReadPosRankSum=1.492;SNPEFF_AMINO_ACID_CHANGE=S222Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39622025_39622181;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:41,24:65:99:597,0,1312
17    39623363    rs3744786    T    C    398.48    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.877;DB;DP=43;Dels=0.0;FS=3.091;HRun=2;HaplotypeScore=0.8321;MQ=58.92;MQ0=0;MQRankSum=0.214;QD=9.27;ReadPosRankSum=0.515;SNPEFF_AMINO_ACID_CHANGE=Q72R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39623110_39623681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:27,16:43:99:428,0,847
17    39623622    rs1807434    A    C    123.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=12.31;ReadPosRankSum=-0.851;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_39623110_39623681;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225899    GT:AD:DP:GQ:PL    0/1:5,5:10:99:153,0,160
17    39633317    rs2239711    A    G    750.69    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=4.615;DB;DP=56;Dels=0.0;FS=1.093;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.626;QD=13.41;ReadPosRankSum=1.154;SNPEFF_AMINO_ACID_CHANGE=G423;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39632941_39633455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246639    GT:AD:DP:GQ:PL    0/1:31,25:56:99:781,0,940
17    39633349    rs2071601    G    C    578.56    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.497;DB;DP=54;Dels=0.0;FS=6.289;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=10.71;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=P413A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39632941_39633455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246639    GT:AD:DP:GQ:PL    0/1:28,26:54:99:609,0,929
17    39633610    rs72830064    G    C    108.47    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=13.56;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246639    GT:AD:DP:GQ:PL    0/1:2,6:8:60.20:138,0,60
17    39634576    rs7220061    T    G    123.58    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.991;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.696;QD=8.83;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246639    GT:AD:DP:GQ:PL    0/1:9,5:14:99:154,0,245
17    39634625    rs7216017    A    G    293.85    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=24;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.753;QD=12.24;ReadPosRankSum=0.058;SNPEFF_AMINO_ACID_CHANGE=A299;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39634613_39634738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246639    GT:AD:DP:GQ:PL    0/1:13,11:24:99:324,0,428
17    39635518    rs68136535    CA    C    848.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=60.2002;IndelType=D;MQ=60.93;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246639    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:890,69,0
17    39636044    rs2011243    G    A    1723.61    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.521;DB;DP=104;Dels=0.0;FS=0.999;HRun=2;HaplotypeScore=1.9552;MQ=59.56;MQ0=0;MQRankSum=-0.914;QD=16.57;ReadPosRankSum=-0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246639    GT:AD:DP:GQ:PL    0/1:46,58:104:99:1754,0,1552
17    39637244    rs743686    A    G    516.75    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=36;Dels=0.0;FS=1.348;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.007;QD=14.35;ReadPosRankSum=-1.007;SNPEFF_AMINO_ACID_CHANGE=S36P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39636879_39637392;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393989    GT:AD:DP:GQ:PL    0/1:17,19:36:99:547,0,556
17    39643506    rs78343678    G    A    253.14    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=14.89;ReadPosRankSum=2.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328119    GT:AD:DP:GQ:PL    0/1:7,9:17:99:283,0,162
17    39643646    rs2301354    G    A    176.79    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=17;Dels=0.0;FS=1.913;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.927;QD=10.4;ReadPosRankSum=0.342;SNPEFF_AMINO_ACID_CHANGE=T265M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39643603_39643728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393986    GT:AD:DP:GQ:PL    0/1:10,7:17:99:207,0,289
17    39644057    rs2301353    G    A    209.86    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.025;QD=13.99;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328119    GT:AD:DP:GQ:PL    0/1:8,7:15:99:240,0,291
17    39646021    rs1003842    A    G    481.40    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=36;Dels=0.0;FS=11.103;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.778;QD=13.37;ReadPosRankSum=-0.083;SNPEFF_AMINO_ACID_CHANGE=R32;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39645658_39646116;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328119    GT:AD:DP:GQ:PL    0/1:19,17:36:99:511,0,565
17    39659183    rs4796698    G    A    3403.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.28;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000157775    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3403,256,0
17    39659194    rs4796697    T    C    3744.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.67;SNPEFF_AMINO_ACID_CHANGE=T286A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39659189_39659350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000157775    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3745,286,0
17    39659478    rs72832099    G    A    707.98    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.635;DB;DP=55;Dels=0.0;FS=1.075;HRun=1;HaplotypeScore=0.8321;MQ=59.16;MQ0=0;MQRankSum=1.002;QD=12.87;ReadPosRankSum=-0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000157775    GT:AD:DP:GQ:PL    0/1:28,27:55:99:738,0,888
17    39659529    rs7211835    T    C    2362.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000157775    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2395,190,0
17    39659913    rs9891361    G    A    5265.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6634;MQ=59.72;MQ0=0;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=A175V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39659895_39659977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000157775    GT:AD:DP:GQ:PL    1/1:0,164:164:99:5265,397,0
17    39661689    rs8182306    G    A    1546.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=S38;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39661616_39661802;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000157775    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1580,117,0
17    39670912    rs897420    G    C    522.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.77;MQ0=0;QD=27.52;SNPEFF_AMINO_ACID_CHANGE=A256G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39670901_39670926;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393974    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:556,42,0
17    39671045    rs897421    T    C    122.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458290    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
17    39674540    rs3744784    A    G    342.57    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.967;QD=12.23;ReadPosRankSum=-0.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254043    GT:AD:DP:GQ:PL    0/1:15,13:28:99:373,0,447
17    39674641    rs1050784    T    C    1727.13    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DB;DP=110;Dels=0.0;FS=0.804;HRun=0;HaplotypeScore=0.8667;MQ=59.41;MQ0=0;MQRankSum=-0.767;QD=15.7;ReadPosRankSum=-1.167;SNPEFF_AMINO_ACID_CHANGE=T147A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39674582_39678665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254043    GT:AD:DP:GQ:PL    0/1:53,57:110:99:1757,0,1466
17    39680380    .    T    TG    421.89    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.51;DP=38;FS=1.412;HRun=6;HaplotypeScore=107.4542;IndelType=I;MQ=60.25;MQ0=0;MQRankSum=-0.534;QD=11.1;ReadPosRankSum=-0.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455635    GT:AD:DP:GQ:PL    0/1:22,16:38:99:461,0,396
17    39680580    rs1869719    A    C    1928.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=30.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455635    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1961,153,0
17    39680796    rs1869720    T    A    1728.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462611    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1762,129,0
17    39680935    rs4796780    A    G    86.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.583;QD=7.24;ReadPosRankSum=-1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462611    GT:AD:DP:GQ:PL    0/1:6,6:12:99:117,0,218
17    39681475    rs4601    A    G    1526.26    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.453;DB;DP=113;Dels=0.0;FS=2.499;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=0.066;QD=13.51;ReadPosRankSum=-0.449;SNPEFF_AMINO_ACID_CHANGE=N126;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39681443_39681525;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455635    GT:AD:DP:GQ:PL    0/1:54,59:113:99:1556,0,1589
17    39684321    rs4602    G    C    254.91    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.367;DB;DP=27;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.854;QD=9.44;ReadPosRankSum=-0.659;SNPEFF_AMINO_ACID_CHANGE=A60G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39684080_39684560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361566    GT:AD:DP:GQ:PL    0/1:15,12:27:99:285,0,515
17    39723425    rs11313278    CA    C    408    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=58;FS=0.0;HRun=13;HaplotypeScore=369.4993;IndelType=D;MQ=57.17;MQ0=0;MQRankSum=1.808;QD=7.03;ReadPosRankSum=1.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246662    GT:AD:DP:GQ:PL    0/1:10,29:58:99:447,0,284
17    39723451    rs6503636    A    G    905.18    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.314;DB;DP=73;Dels=0.0;FS=3.385;HRun=1;HaplotypeScore=4.3889;MQ=57.51;MQ0=0;MQRankSum=-0.987;QD=12.4;ReadPosRankSum=1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246662    GT:AD:DP:GQ:PL    0/1:35,37:73:99:935,0,894
17    39723990    rs3890472    T    A    1012.37    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.063;DB;DP=79;Dels=0.0;FS=10.102;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=12.81;ReadPosRankSum=1.615;SNPEFF_AMINO_ACID_CHANGE=G469;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39723485_39724002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246662    GT:AD:DP:GQ:PL    0/1:39,40:79:99:1042,0,1228
17    39724047    rs1008753    T    C    974.68    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=10.71;ReadPosRankSum=-1.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246662    GT:AD:DP:GQ:PL    0/1:53,38:91:99:1005,0,1540
17    39726276    rs3816510    C    A    1190.10    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.785;DB;DP=95;Dels=0.0;FS=1.764;HRun=1;HaplotypeScore=3.0436;MQ=59.51;MQ0=0;MQRankSum=0.177;QD=12.53;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246662    GT:AD:DP:GQ:PL    0/1:55,40:95:99:1220,0,1890
17    39727816    rs8075921    T    G    222.66    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=13.92;ReadPosRankSum=0.635;SNPEFF_AMINO_ACID_CHANGE=G143;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39727603_39728310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246662    GT:AD:DP:GQ:PL    0/1:7,9:16:99:253,0,206
17    39728050    rs8070680    G    A    462.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_AMINO_ACID_CHANGE=G65;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39727603_39728310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246662    GT:AD:DP:GQ:PL    1/1:0,18:19:39.10:496,39,0
17    39742492    rs9915113    G    C    406.70    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;MQRankSum=2.014;QD=15.06;ReadPosRankSum=1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167586    GT:AD:DP:GQ:PL    0/1:13,14:27:99:437,0,420
17    39742718    rs3826549    A    G    1210.28    MQFilter40    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.493;DB;DP=107;Dels=0.0;FS=16.12;HRun=0;HaplotypeScore=1.866;MQ=38.84;MQ0=13;MQRankSum=0.973;QD=11.31;ReadPosRankSum=-1.351;SNPEFF_AMINO_ACID_CHANGE=N123;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39742562_39743173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000167586    GT:AD:DP:GQ:PL    0/1:51,56:107:99:1240,0,994
17    39742807    rs3826550    C    T    122.19    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=41;Dels=0.0;FS=5.726;HRun=0;HaplotypeScore=0.0;MQ=43.12;MQ0=0;MQRankSum=-2.34;QD=2.98;ReadPosRankSum=-1.649;SNPEFF_AMINO_ACID_CHANGE=A94T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39742562_39743173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000167586    GT:AD:DP:GQ:PL    0/1:29,12:41:99:152,0,863
17    39742894    rs3826551    G    A    98.25    SnpCluster    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.89;MQ0=0;MQRankSum=0.361;QD=10.92;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=L65;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39742562_39743173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000167586    GT:AD:DP:GQ:PL    0/1:5,4:9:99:128,0,128
17    39742898    rs11551758    G    A    56.54    SnpCluster    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.89;MQ0=0;MQRankSum=0.361;QD=6.28;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=C63;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39742562_39743173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000167586    GT:AD:DP:GQ:PL    0/1:5,4:9:86.53:87,0,130
17    39742899    rs6503640    C    T    239.06    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.89;MQ0=0;QD=26.56;SNPEFF_AMINO_ACID_CHANGE=C63Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39742562_39743173;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000167586    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:272,24,0
17    39743081    rs11551759    G    A    318    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.509;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=53.12;MQ0=0;MQRankSum=-0.615;QD=15.14;ReadPosRankSum=0.28;SNPEFF_AMINO_ACID_CHANGE=T2;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39742562_39743173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000167586    GT:AD:DP:GQ:PL    0/1:3,18:21:76.64:348,0,77
17    39743180    rs12942461    G    A    339.55    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=16;Dels=0.0;FS=3.736;HRun=0;HaplotypeScore=0.8941;MQ=52.2;MQ0=0;MQRankSum=0.156;QD=21.22;ReadPosRankSum=1.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167586    GT:AD:DP:GQ:PL    0/1:4,12:16:48.66:370,0,49
17    39766504    rs7406899    A    G    807.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.43;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301653    GT:AD:DP:GQ:PL    1/1:0,27:27:69.21:841,69,0
17    39767744    rs4796681    A    G    767.38    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.765;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.89;MQ0=0;MQRankSum=0.148;QD=17.05;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=H208;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39767597_39767753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301653    GT:AD:DP:GQ:PL    0/1:20,25:45:99:797,0,629
17    39767836    rs2100509    G    A    85.22    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=6.818;HRun=0;HaplotypeScore=0.0;MQ=58.19;MQ0=0;MQRankSum=1.626;QD=6.09;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRT16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301653    GT:AD:DP:GQ:PL    0/1:10,4:14:99:115,0,267
17    39779160    rs9916519    G    C    701.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.852;DB;DP=54;Dels=0.0;FS=1.524;HRun=2;HaplotypeScore=0.8667;MQ=58.98;MQ0=0;MQRankSum=0.81;QD=12.99;ReadPosRankSum=-0.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540235    GT:AD:DP:GQ:PL    0/1:27,27:54:99:732,0,717
17    39780140    rs8073131    T    C    72.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.727;QD=18.01;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540235    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:102,0,29
17    39785241    rs8076409    C    G    789.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.61;MQ0=0;QD=29.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540235    GT:AD:DP:GQ:PL    1/1:0,27:27:66.19:822,66,0
17    39786865    rs7405662    G    A    620.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540235    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:653,48,0
17    39791686    rs8070585    T    C    90.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540235    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:123,9,0
17    39795768    rs6416918    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540235    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    39871435    rs4796684    A    C    117.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442364    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:150,12,0
17    39871551    rs11286851    TA    T    793.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.0;HRun=14;HaplotypeScore=310.7049;IndelType=D;MQ=56.06;MQ0=0;QD=16.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442364    GT:AD:DP:GQ:PL    1/1:8,39:49:99:835,125,0
17    39871565    .    AG    A    134.63    QDFilter2    AB=0.921;AC=1;AF=0.50;AN=2;BaseQRankSum=2.719;DP=70;FS=0.0;HRun=1;HaplotypeScore=431.4186;IndelType=D;MQ=56.58;MQ0=0;MQRankSum=-0.956;QD=1.92;ReadPosRankSum=2.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442364    GT:AD:DP:GQ:PL    0/1:64,6:70:99:174,0,464
17    39871700    rs7220169    G    A    7986.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=240;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.84;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=L4;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39871684_39871899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAST;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329402    GT:AD:DP:GQ:PL    1/1:0,239:240:99:7986,611,0
17    39874075    rs7213435    C    A    74.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329402    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
17    39874137    rs7212417    G    A    328.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=29.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329402    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:361,30,0
17    39874267    rs7218465    T    A    464.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=27.33;SNPEFF_AMINO_ACID_CHANGE=R110W;SNPEFF_CODON_CHANGE=Agg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39873994_39874278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458656    GT:AD:DP:GQ:PL    1/1:0,17:17:39.11:498,39,0
17    39874283    rs11079007    T    A    421.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329402    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:455,36,0
17    39880680    rs4461125    C    T    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442364    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    39881289    rs8075017    G    C    8629.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6221;MQ=59.46;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=F15L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39881018_39881333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458656    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8630,647,0
17    39881487    rs11869104    T    C    240.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
17    39883559    rs33914436    G    A    677.37    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.399;DB;DP=54;Dels=0.0;FS=1.117;HRun=0;HaplotypeScore=0.9332;MQ=59.57;MQ0=0;MQRankSum=-0.879;QD=12.54;ReadPosRankSum=-1.429;SNPEFF_AMINO_ACID_CHANGE=S474;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39883550_39883705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    0/1:29,25:54:99:707,0,743
17    39883595    rs7216154    T    C    1880.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.82;SNPEFF_AMINO_ACID_CHANGE=P462;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39883550_39883705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1913,150,0
17    39883672    rs11867808    G    A    1083.17    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=2.66;DB;DP=79;Dels=0.0;FS=3.089;HRun=0;HaplotypeScore=0.8667;MQ=59.71;MQ0=0;MQRankSum=-0.509;QD=13.71;ReadPosRankSum=0.478;SNPEFF_AMINO_ACID_CHANGE=R437W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39883550_39883705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1113,0,982
17    39883789    rs4796691    A    G    811.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:845,63,0
17    39883972    rs4796600    C    T    575.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:609,48,0
17    39884065    rs35612698    C    A    347.76    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.561;DB;DP=30;Dels=0.0;FS=5.846;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.062;QD=11.59;ReadPosRankSum=1.85;SNPEFF_AMINO_ACID_CHANGE=L408F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39884014_39884088;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    0/1:16,14:30:99:378,0,424
17    39884091    rs4796601    G    C    662.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,23:24:57.17:696,57,0
17    39884246    rs4796602    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    39884419    rs4796692    C    T    848.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:882,66,0
17    39884583    rs4796693    G    A    826.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=29.54;SNPEFF_AMINO_ACID_CHANGE=S357L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39884453_39884583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,27:28:66.21:860,66,0
17    39884684    rs4796694    C    T    251    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
17    39888102    rs3895104    A    G    244.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
17    39888455    rs3895103    G    C    1606.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=59.52;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1639,126,0
17    39890715    rs4796603    A    T    510.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=S58T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39890418_39890896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310778    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:543,42,0
17    39912145    rs1126821    T    A    155.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_AMINO_ACID_CHANGE=M697L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39911982_39912147;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310706    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:188,15,0
17    39912581    rs9890858    A    G    207.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310706    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
17    39913645    rs7216034    T    C    1460.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310706    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1493,111,0
17    39923614    rs12942034    A    G    471.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=29.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420370    GT:AD:DP:GQ:PL    1/1:0,16:16:39.10:505,39,0
17    39923960    rs9914693    T    C    36.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424457    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
17    39925925    rs7405731    A    G    371.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_AMINO_ACID_CHANGE=D71;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39925670_39925929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JUP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310706    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:405,30,0
17    39959189    rs1065029    C    G    2275.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=28.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484247    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2309,175,0
17    39959433    rs3809876    A    G    267.51    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.934;DB;DP=22;Dels=0.0;FS=1.707;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.352;QD=12.16;ReadPosRankSum=0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355468    GT:AD:DP:GQ:PL    0/1:12,10:22:99:298,0,387
17    39959511    rs3809877    C    T    732.63    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=1.414;DB;DP=51;Dels=0.0;FS=3.152;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.356;QD=14.37;ReadPosRankSum=0.478;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355468    GT:AD:DP:GQ:PL    0/1:22,29:51:99:763,0,544
17    39963951    rs139475959    C    T    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467164    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
17    39964032    rs149683818    G    A    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.48;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467164    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,73
17    39966168    rs2304493    T    G    192.38    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.708;DB;DP=25;Dels=0.0;FS=2.754;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=7.7;ReadPosRankSum=0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467164    GT:AD:DP:GQ:PL    0/1:16,9:25:99:222,0,546
17    39967087    rs1469863    C    T    229.39    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=25;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.194;QD=9.18;ReadPosRankSum=0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355468    GT:AD:DP:GQ:PL    0/1:15,10:25:99:259,0,469
17    39967442    rs13412    T    C    1187.97    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.1;DB;DP=97;Dels=0.0;FS=3.942;HRun=4;HaplotypeScore=1.8055;MQ=59.09;MQ0=0;MQRankSum=-0.134;QD=12.25;ReadPosRankSum=-0.442;SNPEFF_AMINO_ACID_CHANGE=Q175R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39967384_39967536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEPREL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545545    GT:AD:DP:GQ:PL    0/1:49,48:97:99:1218,0,1424
17    39976024    rs11079016    G    A    748.05    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=4.36;DB;DP=51;Dels=0.0;FS=3.276;HRun=0;HaplotypeScore=0.5784;MQ=59.55;MQ0=0;MQRankSum=-0.203;QD=14.67;ReadPosRankSum=-0.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429461    GT:AD:DP:GQ:PL    0/1:23,28:51:99:778,0,563
17    39977862    rs8072866    C    T    630.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429461    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:664,51,0
17    39983644    rs9896766    A    C    1009.37    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=4.144;DB;DP=86;Dels=0.0;FS=1.013;HRun=1;HaplotypeScore=0.734;MQ=59.08;MQ0=0;MQRankSum=1.352;QD=11.74;ReadPosRankSum=-0.722;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269598    GT:AD:DP:GQ:PL    0/1:48,38:86:99:1039,0,1432
17    39983808    rs1046404    G    C    1305.96    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.379;DB;DP=94;Dels=0.0;FS=1.772;HRun=0;HaplotypeScore=1.9727;MQ=59.51;MQ0=0;MQRankSum=-0.164;QD=13.89;ReadPosRankSum=0.708;SNPEFF_AMINO_ACID_CHANGE=S183C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39983678_39983878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C3L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415460    GT:AD:DP:GQ:PL    0/1:52,42:94:99:1336,0,1609
17    39983820    rs1046403    G    A    1366.63    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.089;DB;DP=100;Dels=0.0;FS=4.066;HRun=0;HaplotypeScore=0.6651;MQ=59.31;MQ0=0;MQRankSum=-0.573;QD=13.67;ReadPosRankSum=1.235;SNPEFF_AMINO_ACID_CHANGE=A179V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39983678_39983878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C3L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415460    GT:AD:DP:GQ:PL    0/1:52,48:100:99:1397,0,1459
17    39983849    rs1128966    G    C    1270.36    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.218;DB;DP=84;Dels=0.0;FS=0.919;HRun=0;HaplotypeScore=0.9789;MQ=58.89;MQ0=0;MQRankSum=-2.143;QD=15.12;ReadPosRankSum=0.391;SNPEFF_AMINO_ACID_CHANGE=L169;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39983678_39983878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415460    GT:AD:DP:GQ:PL    0/1:38,46:84:99:1300,0,1217
17    39987130    rs4796712    T    C    1988.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_AMINO_ACID_CHANGE=A101;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39987053_39987142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269534    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2021,162,0
17    39988601    rs7208062    C    T    452.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.023;DB;DP=28;Dels=0.0;FS=1.72;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.602;QD=16.15;ReadPosRankSum=-0.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520442    GT:AD:DP:GQ:PL    0/1:12,16:28:99:482,0,382
17    39998141    rs1529933    C    T    1120.61    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.875;DB;DP=72;Dels=0.0;FS=6.551;HRun=0;HaplotypeScore=2.7031;MQ=59.29;MQ0=0;MQRankSum=-0.966;QD=15.56;ReadPosRankSum=-0.119;SNPEFF_AMINO_ACID_CHANGE=P81;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_39998031_39998356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438813    GT:AD:DP:GQ:PL    0/1:30,42:72:99:1151,0,833
17    40001119    rs60090576    G    A    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438813    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
17    40003359    rs4796720    C    G    247.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485613    GT:AD:DP:GQ:PL    1/1:0,10:10:24.04:280,24,0
17    40003421    rs4796721    C    T    270.47    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.346;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.598;QD=11.27;ReadPosRankSum=0.976;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319121    GT:AD:DP:GQ:PL    0/1:15,9:24:99:300,0,498
17    40010979    rs3744782    G    A    979.78    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.827;DB;DP=77;Dels=0.0;FS=0.873;HRun=3;HaplotypeScore=2.5768;MQ=58.97;MQ0=0;MQRankSum=-1.337;QD=12.72;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=Y243;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40009799_40011573;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540254    GT:AD:DP:GQ:PL    0/1:36,41:77:99:1010,0,1225
17    40024023    rs7217218    A    T    1314.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319121    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1348,105,0
17    40024868    rs57604811    AG    A    230.63    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=24;FS=0.0;HRun=1;HaplotypeScore=247.9469;IndelType=D;MQ=44.62;MQ0=0;MQRankSum=-1.262;QD=9.61;ReadPosRankSum=-0.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:19,5:24:99:270,0,177
17    40024895    rs8079008    A    G    847.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.1321;MQ=51.2;MQ0=0;QD=27.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    1/1:0,31:31:75.17:881,75,0
17    40025264    rs9912300    G    T    3166.09    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=10.148;DB;DP=228;Dels=0.0;FS=4.952;HRun=1;HaplotypeScore=3.703;MQ=59.82;MQ0=0;MQRankSum=-2.248;QD=13.89;ReadPosRankSum=0.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:122,106:228:99:3196,0,3312
17    40025285    rs9914829    A    G    8710.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8264;MQ=59.83;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    1/1:0,250:250:99:8710,647,0
17    40025453    rs3744779    T    C    1142.62    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.288;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.007;QD=14.46;ReadPosRankSum=-1.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:43,36:79:99:1173,0,1458
17    40025670    rs3744780    G    A    265.04    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.975;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=13.25;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:11,9:20:99:295,0,395
17    40027869    rs1808787    A    T    142.63    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.639;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.983;QD=7.51;ReadPosRankSum=-0.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:12,7:19:99:173,0,439
17    40028450    rs8071627    A    T    195.22    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=18;Dels=0.0;FS=2.029;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.721;QD=10.85;ReadPosRankSum=0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:11,7:18:99:225,0,318
17    40028541    rs8071753    A    G    74.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.67;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,144
17    40028568    rs8071234    C    G    41.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.31;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:2,2:4:67.77:71,0,68
17    40035338    rs71373464    A    T    110.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.82;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,103
17    40048613    rs8065502    A    G    1087.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.59;MQ0=0;QD=33.99;SNPEFF_AMINO_ACID_CHANGE=H292;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40048532_40048700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537919    GT:AD:DP:GQ:PL    1/1:0,32:32:87.24:1121,87,0
17    40049171    rs4796735    G    A    504.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:538,39,0
17    40049473    rs4796736    A    G    1271.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1304,99,0
17    40052642    rs35896706    A    G    35.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.94;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:66,0,70
17    40052842    rs67473931    G    A    445.42    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.178;QD=9.28;ReadPosRankSum=-0.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:28,20:48:99:475,0,787
17    40053021    rs11652326    T    C    530.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:563,45,0
17    40058204    rs3816121    C    A    386.68    SnpCluster    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.893;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=19.33;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:8,12:20:99:417,0,217
17    40058211    rs60769720    G    A    87.39    SnpCluster    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.588;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=5.83;ReadPosRankSum=1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:11,4:15:99:117,0,385
17    40058212    rs3816122    G    A    353.33    SnpCluster    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.632;QD=23.56;ReadPosRankSum=-0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:4,11:15:99:383,0,125
17    40062719    rs12948100    T    C    195.86    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=8.52;ReadPosRankSum=-0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:12,11:23:99:226,0,395
17    40063083    rs11079024    A    C    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
17    40065774    rs2304497    T    G    478.72    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.008;DB;DP=41;Dels=0.0;FS=4.575;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.488;QD=11.68;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=E175D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40065763_40065953;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:22,19:41:99:509,0,650
17    40068613    rs2304499    G    A    705.39    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=57;Dels=0.0;FS=4.319;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.098;QD=12.38;ReadPosRankSum=0.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACLY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352035    GT:AD:DP:GQ:PL    0/1:30,27:57:99:735,0,899
17    40094835    rs3809878    C    T    1256.93    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=0.402;DB;DP=90;Dels=0.0;FS=2.957;HRun=0;HaplotypeScore=4.2841;MQ=59.64;MQ0=0;MQRankSum=1.029;QD=13.97;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091172.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377540    GT:AD:DP:GQ:PL    0/1:41,49:90:99:1287,0,1219
17    40120771    rs8078650    T    G    105.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DB;DP=15;Dels=0.0;FS=6.368;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.286;QD=7.01;ReadPosRankSum=-0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091172.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377540    GT:AD:DP:GQ:PL    0/1:10,5:15:99:135,0,342
17    40123829    rs12602950    G    A    267.96    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.898;QD=26.8;ReadPosRankSum=1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441615    GT:AD:DP:GQ:PL    0/1:2,8:10:40.03:298,0,40
17    40125263    rs8077391    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441615    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:79,6,0
17    40125864    rs2070106    G    A    253.86    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=26;Dels=0.0;FS=1.643;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.025;QD=9.76;ReadPosRankSum=-0.263;SNPEFF_AMINO_ACID_CHANGE=G272;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40125493_40126145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310262    GT:AD:DP:GQ:PL    0/1:14,12:26:99:284,0,444
17    40142121    rs28618174    C    T    457.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316603    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:491,36,0
17    40146970    rs6503679    G    A    3373.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316603    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3373,241,0
17    40152431    rs72540122    CT    C    1006.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=2;HaplotypeScore=67.5666;IndelType=D;MQ=60.4;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316603    GT:AD:DP:GQ:PL    1/1:0,27:27:81.26:1049,81,0
17    40169519    rs4796758    G    T    725.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=36.26;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316603    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:758,57,0
17    40173851    rs9894001    A    C    2978.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.48;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF385C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461831    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3012,220,0
17    40174841    rs4796759    A    C    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF385C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436535    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
17    40186128    rs4277396    C    A    217.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF385C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436535    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:250,18,0
17    40213963    rs4796633    G    A    1714.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF385C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436535    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1747,135,0
17    40215180    rs4796765    A    G    470.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=33.64;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF385C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436535    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:504,39,0
17    40266939    rs17659391    G    A    1462.34    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1434;MQ=59.41;MQ0=0;MQRankSum=-1.106;QD=14.2;ReadPosRankSum=0.955;SNPEFF_AMINO_ACID_CHANGE=L664;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40266910_40267053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225916    GT:AD:DP:GQ:PL    0/1:53,50:103:99:1492,0,1574
17    40314213    rs60075634    A    C    428.26    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.459;DB;DP=33;Dels=0.0;FS=1.624;HRun=0;HaplotypeScore=4.2931;MQ=59.3;MQ0=0;MQRankSum=1.423;QD=12.98;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264661    GT:AD:DP:GQ:PL    0/1:17,16:33:99:458,0,540
17    40318296    rs28459794    A    G    154.63    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=22.09;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264661    GT:AD:DP:GQ:PL    0/1:1,6:7:21.95:185,0,22
17    40322252    rs939881    T    C    86.01    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=7.82;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=S421;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40322125_40322319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264661    GT:AD:DP:GQ:PL    0/1:6,5:11:99:116,0,148
17    40359505    rs66538430    GCA    G    329.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=103.069;IndelType=D;MQ=56.39;MQ0=1;QD=18.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468496    GT:AD:DP:GQ:PL    1/1:5,10:17:38.60:372,39,0
17    40452675    rs2293157    C    A    296.51    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=35;Dels=0.0;FS=1.691;HRun=0;HaplotypeScore=0.0;MQ=41.29;MQ0=1;MQRankSum=-0.917;QD=8.47;ReadPosRankSum=-0.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345506    GT:AD:DP:GQ:PL    0/1:21,13:35:99:327,0,621
17    40459562    rs2272087    A    G    325.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=22;Dels=0.0;FS=1.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.131;QD=14.8;ReadPosRankSum=1.182;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479417    GT:AD:DP:GQ:PL    0/1:11,11:22:99:356,0,362
17    40459737    rs1135669    C    T    505.91    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.46;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9971;MQ=59.45;MQ0=0;MQRankSum=0.328;QD=12.05;ReadPosRankSum=1.616;SNPEFF_AMINO_ACID_CHANGE=D604;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40459611_40459741;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT5A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546010    GT:AD:DP:GQ:PL    0/1:23,19:42:99:536,0,716
17    40460989    rs2293155    A    G    402.75    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.955;QD=11.19;ReadPosRankSum=-0.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264657    GT:AD:DP:GQ:PL    0/1:23,13:36:99:433,0,754
17    40461003    rs2293154    C    T    402.41    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.169;DB;DP=44;Dels=0.0;FS=5.494;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.644;QD=9.15;ReadPosRankSum=0.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264657    GT:AD:DP:GQ:PL    0/1:29,15:44:99:432,0,939
17    40474864    rs8064496    A    G    68.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.77;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471989    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:99,0,69
17    40474880    rs8081431    G    C    110.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.84;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471989    GT:AD:DP:GQ:PL    0/1:3,4:7:89.74:141,0,90
17    40475650    rs3830585    G    GA    319.92    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.511;DB;DP=16;FS=0.0;HRun=3;HaplotypeScore=57.526;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=-0.429;QD=19.99;ReadPosRankSum=0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264657    GT:AD:DP:GQ:PL    0/1:5,11:16:99:359,0,135
17    40481529    rs2293152    G    C    1673.97    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.368;DB;DP=117;Dels=0.0;FS=2.852;HRun=2;HaplotypeScore=1.6918;MQ=59.09;MQ0=0;MQRankSum=1.145;QD=14.31;ReadPosRankSum=0.753;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478276    GT:AD:DP:GQ:PL    0/1:55,62:117:99:1704,0,1533
17    40500265    rs2306581    C    A    233.45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=21;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.096;QD=11.12;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264657    GT:AD:DP:GQ:PL    0/1:12,9:21:99:263,0,402
17    40619937    rs4796668    A    G    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264649    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
17    40639422    rs8069972    G    A    677.69    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.207;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.522;QD=15.76;ReadPosRankSum=-1.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264649    GT:AD:DP:GQ:PL    0/1:21,22:43:99:708,0,701
17    40642452    rs9899168    T    C    451.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264649    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:485,36,0
17    40646803    rs11651671    G    A    44.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.0;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264649    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:75,0,22
17    40650805    rs34779517    C    T    36.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.04;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V0A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264649    GT:AD:DP:GQ:PL    0/1:2,2:4:66.17:66,0,69
17    40689455    rs659497    T    C    1137.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=S141;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40689416_40689563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGLU;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225927    GT:AD:DP:GQ:PL    1/1:0,38:38:90.27:1170,90,0
17    40689613    rs2071046    G    C    107.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=43.0;MQ0=0;QD=17.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGLU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225927    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:140,12,0
17    40690118    rs4792923    G    C    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGLU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225927    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
17    40693344    rs630539    C    T    101.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGLU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225927    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:134,12,0
17    40696233    rs86312    C    G    917.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=26.22;SNPEFF_AMINO_ACID_CHANGE=R413G;SNPEFF_CODON_CHANGE=Cgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40695046_40696464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGLU;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377405    GT:AD:DP:GQ:PL    1/1:0,35:35:78.21:951,78,0
17    40699291    rs607740    G    A    124    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.8;SNPEFF_AMINO_ACID_CHANGE=D91N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40699286_40699464;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B1P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442612    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
17    40699332    rs607795    T    C    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_AMINO_ACID_CHANGE=A104;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40699286_40699464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B1P1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442612    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    40699475    rs67843205    G    GC    168.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=3;HaplotypeScore=15.4342;IndelType=I;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442612    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:210,15,0
17    40705100    rs597255    C    T    648.13    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=40;Dels=0.0;FS=4.781;HRun=0;HaplotypeScore=1.6649;MQ=59.06;MQ0=0;MQRankSum=0.109;QD=16.2;ReadPosRankSum=1.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225928    GT:AD:DP:GQ:PL    0/1:17,23:40:99:678,0,518
17    40705715    rs610166    G    A    126.67    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.214;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.546;QD=12.67;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225928    GT:AD:DP:GQ:PL    0/1:3,7:10:94.71:157,0,95
17    40705724    rs610177    T    G    176.40    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=19.6;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225928    GT:AD:DP:GQ:PL    0/1:2,7:9:45.35:206,0,45
17    40705955    rs2676530    C    T    419.05    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.619;DB;DP=22;Dels=0.0;FS=5.379;HRun=0;HaplotypeScore=0.8667;MQ=58.86;MQ0=0;MQRankSum=1.528;QD=19.05;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225928    GT:AD:DP:GQ:PL    0/1:6,16:22:99:449,0,137
17    40714665    rs117419466    C    T    274.51    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=26;Dels=0.0;FS=6.226;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.349;QD=10.56;ReadPosRankSum=-1.453;SNPEFF_AMINO_ACID_CHANGE=L38;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40714630_40715340;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COASY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421097    GT:AD:DP:GQ:PL    0/1:15,11:26:99:305,0,488
17    40714804    rs615942    C    A    1536.17    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.932;DB;DP=92;Dels=0.0;FS=5.752;HRun=0;HaplotypeScore=0.8667;MQ=59.25;MQ0=0;MQRankSum=0.513;QD=16.7;ReadPosRankSum=-1.007;SNPEFF_AMINO_ACID_CHANGE=S55Y;SNPEFF_CODON_CHANGE=tCc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40714092_40715340;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COASY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393818    GT:AD:DP:GQ:PL    0/1:43,49:92:99:1566,0,1294
17    40716520    rs598126    A    G    669.31    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=51;Dels=0.0;FS=3.842;HRun=1;HaplotypeScore=0.734;MQ=59.63;MQ0=0;MQRankSum=0.126;QD=13.12;ReadPosRankSum=-0.631;SNPEFF_AMINO_ACID_CHANGE=T29;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40716464_40716595;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COASY;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449624    GT:AD:DP:GQ:PL    0/1:27,24:51:99:699,0,879
17    40719474    rs2292755    T    C    224.89    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.179;QD=24.99;ReadPosRankSum=0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COASY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393818    GT:AD:DP:GQ:PL    0/1:2,7:9:56.90:255,0,57
17    40720605    rs646174    G    A    1027.73    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=74;Dels=0.0;FS=14.787;HRun=0;HaplotypeScore=3.367;MQ=59.44;MQ0=0;MQRankSum=-0.682;QD=13.89;ReadPosRankSum=-0.769;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COASY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393818    GT:AD:DP:GQ:PL    0/1:32,42:74:99:1058,0,1067
17    40721360    rs632758    C    A    322.84    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.899;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=16.99;ReadPosRankSum=-2.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COASY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393818    GT:AD:DP:GQ:PL    0/1:9,10:19:99:353,0,260
17    40723391    rs2010750    C    T    384.83    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.575;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.411;QD=15.39;ReadPosRankSum=-0.411;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC3IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253789    GT:AD:DP:GQ:PL    0/1:11,14:25:99:415,0,390
17    40725656    rs2292752    G    C    945.23    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=0.36;DB;DP=51;Dels=0.0;FS=5.456;HRun=2;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.672;QD=18.53;ReadPosRankSum=1.627;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246912    GT:AD:DP:GQ:PL    0/1:19,32:51:99:975,0,616
17    40725799    rs2292751    C    T    72.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.42;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246912    GT:AD:DP:GQ:PL    0/1:2,3:5:47.77:102,0,48
17    40735469    rs1517002    T    G    178.11    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=9.89;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM134C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309428    GT:AD:DP:GQ:PL    0/1:10,8:18:99:208,0,322
17    40737043    rs9889580    G    C    121.79    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9894;MQ=58.05;MQ0=0;MQRankSum=0.143;QD=10.15;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM134C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309428    GT:AD:DP:GQ:PL    0/1:5,7:12:99:152,0,153
17    40737117    rs4792992    G    A    660.77    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.281;QD=20.02;ReadPosRankSum=0.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM134C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309428    GT:AD:DP:GQ:PL    0/1:12,21:33:99:691,0,332
17    40744320    rs4793253    A    G    36.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.3;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM134C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309428    GT:AD:DP:GQ:PL    0/1:3,2:5:66.50:66,0,103
17    40766546    rs1045710    C    G    430.26    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.082;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=50.36;MQ0=3;MQRankSum=-4.319;QD=8.96;ReadPosRankSum=-2.189;SNPEFF_AMINO_ACID_CHANGE=R343;SNPEFF_CODON_CHANGE=cgC/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40766514_40766675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251413    GT:AD:DP:GQ:PL    0/1:28,20:48:99:460,0,934
17    40811781    rs2292750    C    T    166.61    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.54;MQ0=0;MQRankSum=-0.779;QD=12.82;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251412    GT:AD:DP:GQ:PL    0/1:7,6:13:99:197,0,204
17    40811919    rs525911    A    G    37.40    QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=48.92;MQ0=0;MQRankSum=-2.67;QD=1.21;ReadPosRankSum=-1.063;SNPEFF_AMINO_ACID_CHANGE=E39;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40811852_40811964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251412    GT:AD:DP:GQ:PL    0/1:24,7:31:67.40:67,0,836
17    40812797    rs3835175    C    CT    264.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=23.4348;IndelType=I;MQ=61.78;MQ0=0;MQRankSum=1.835;QD=22.07;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251412    GT:AD:DP:GQ:PL    0/1:4,8:12:99:304,0,120
17    40817371    rs35591488    CT    C    524.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=11;HaplotypeScore=80.9258;IndelType=D;MQ=60.9;MQ0=0;QD=21.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293349    GT:AD:DP:GQ:PL    1/1:1,23:24:68.92:567,69,0
17    40817448    rs3817331    G    A    789.57    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=68;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=1.09;QD=11.61;ReadPosRankSum=-0.006;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293349    GT:AD:DP:GQ:PL    0/1:40,28:68:99:820,0,1312
17    40817990    rs7225374    G    A    818.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=37.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293349    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:851,63,0
17    40818451    rs1554227    G    A    863.25    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=62;Dels=0.0;FS=2.244;HRun=0;HaplotypeScore=3.5683;MQ=48.42;MQ0=5;MQRankSum=1.317;QD=13.92;ReadPosRankSum=1.237;SNPEFF_AMINO_ACID_CHANGE=S369;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40818341_40818502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251412    GT:AD:DP:GQ:PL    0/1:33,29:62:99:893,0,642
17    40818699    rs1046097    A    G    812.96    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.719;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9954;MQ=59.72;MQ0=0;MQRankSum=-0.174;QD=12.13;ReadPosRankSum=0.985;SNPEFF_AMINO_ACID_CHANGE=M413V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40818621_40819021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251412    GT:AD:DP:GQ:PL    0/1:36,30:67:99:843,0,1046
17    40821927    rs188984018    C    G    55.54    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=14;Dels=0.0;FS=6.64;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.855;QD=3.97;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251412    GT:AD:DP:GQ:PL    0/1:9,5:14:85.54:86,0,259
17    40822678    rs2277618    C    T    443.71    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.792;DB;DP=35;Dels=0.0;FS=3.581;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.964;QD=12.68;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=G148;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40822591_40822723;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456950    GT:AD:DP:GQ:PL    0/1:18,17:35:99:474,0,558
17    40828206    rs7218635    T    C    55.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCR10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332438    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
17    40835649    rs4028634    T    C    51.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264638    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    40835922    rs2271029    A    C    267.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=14.85;ReadPosRankSum=-0.222;SNPEFF_AMINO_ACID_CHANGE=R51;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_40835839_40835940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264638    GT:AD:DP:GQ:PL    0/1:8,10:18:99:297,0,238
17    40836374    rs6503718    T    C    714.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264638    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:748,57,0
17    40836975    rs9889373    A    G    264.77    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.172;DB;DP=28;Dels=0.0;FS=2.447;HRun=2;HaplotypeScore=0.0;MQ=57.48;MQ0=0;MQRankSum=-0.317;QD=9.46;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264638    GT:AD:DP:GQ:PL    0/1:15,13:28:99:295,0,527
17    40841906    rs3760385    A    G    94.83    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=18.97;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264638    GT:AD:DP:GQ:PL    0/1:1,4:5:23.53:125,0,24
17    40842084    rs3760386    G    A    1293.67    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.677;DB;DP=89;Dels=0.0;FS=7.607;HRun=0;HaplotypeScore=0.9979;MQ=59.27;MQ0=0;MQRankSum=0.272;QD=14.54;ReadPosRankSum=0.497;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTNAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264638    GT:AD:DP:GQ:PL    0/1:46,43:89:99:1324,0,1402
17    40847517    .    A    G    708.02    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.389;DP=64;Dels=0.0;FS=3.722;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.064;QD=11.06;ReadPosRankSum=-0.389;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264646    GT:AD:DP:GQ:PL    0/1:35,29:64:99:738,0,906
17    40849842    rs1553468    A    G    905.05    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.832;DB;DP=74;Dels=0.0;FS=1.936;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.238;QD=12.23;ReadPosRankSum=1.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EZH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264646    GT:AD:DP:GQ:PL    0/1:40,34:74:99:935,0,1323
17    40912760    rs1078523    A    G    175.09    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=-1.376;QD=10.3;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC100793.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360166    GT:AD:DP:GQ:PL    0/1:10,7:17:99:205,0,311
17    40936944    rs72099736    TG    T    73.28    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;FS=7.782;HRun=10;HaplotypeScore=14.7846;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.21;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246914    GT:AD:DP:GQ:PL    0/1:1,5:6:15.19:112,0,15
17    40963904    rs10512488    G    A    432.93    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.243;QD=11.7;ReadPosRankSum=-1.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315066    GT:AD:DP:GQ:PL    0/1:22,14:37:99:463,0,785
17    40986454    rs59492997    GGA    G    205.62    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=2.066;DB;DP=43;FS=1.477;HRun=0;HaplotypeScore=186.1185;IndelType=D;MQ=57.26;MQ0=0;MQRankSum=0.43;QD=4.78;ReadPosRankSum=0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293362    GT:AD:DP:GQ:PL    0/1:32,9:43:99:245,0,755
17    40990854    .    G    T    203.20    HaplotypeScoreFilter13    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.436;DP=75;Dels=0.0;FS=36.578;HRun=2;HaplotypeScore=16.6058;MQ=49.96;MQ0=0;MQRankSum=-3.469;QD=2.71;ReadPosRankSum=2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSME3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293362    GT:AD:DP:GQ:PL    0/1:45,30:75:99:233,0,793
17    41046440    rs324079    T    G    239.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC100793.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301683    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:272,24,0
17    41063466    rs2229611    T    C    1039.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253801    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1073,81,0
17    41103938    rs534720    T    C    1163.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423601    GT:AD:DP:GQ:PL    1/1:0,36:36:90.29:1197,90,0
17    41107705    rs692127    A    G    227.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483774    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:261,24,0
17    41107737    rs473986    T    C    558.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483774    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:591,45,0
17    41108973    rs7225021    T    C    109.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9979;MQ=39.12;MQ0=0;QD=27.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492036    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
17    41113131    rs35166621    CA    C    2778.70    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=8.903;DB;DP=214;FS=0.0;HRun=3;HaplotypeScore=571.9125;IndelType=D;MQ=59.98;MQ0=0;MQRankSum=1.408;QD=12.98;ReadPosRankSum=1.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454303    GT:AD:DP:GQ:PL    0/1:120,94:214:99:2818,0,4263
17    41113543    rs2670865    C    G    134.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454303    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
17    41116234    rs690941    G    A    1645.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.51;MQ0=0;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_41116123_41116254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000409103    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1678,132,0
17    41116291    rs146040814    CAGCCCT    C    920.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=180.3475;IndelType=D;MQ=33.92;MQ0=0;QD=46.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409446    GT:AD:DP:GQ:PL    1/1:5,15:20:45.15:963,45,0
17    41121209    .    GGC    G    521.89    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=165.3374;IndelType=D;MQ=55.71;MQ0=0;QD=30.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360221    GT:AD:DP:GQ:PL    1/1:9,8:17:48.59:564,49,0
17    41121210    rs113173233    GC    G    428.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=158.3506;IndelType=D;MQ=55.43;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360221    GT:AD:DP:GQ:PL    1/1:9,7:16:47.82:471,48,0
17    41121263    rs4793187    G    A    97.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.835;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=8.15;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360221    GT:AD:DP:GQ:PL    0/1:8,4:12:99:128,0,261
17    41122443    rs2670866    T    C    2380.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=59.42;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360221    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2414,208,0
17    41131004    rs6503723    T    C    174.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451885    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
17    41132578    rs692074    T    C    206.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AARSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360221    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:240,18,0
17    41133071    rs1708875    T    C    87.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.86;SNPEFF_AMINO_ACID_CHANGE=W160R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_41132582_41133091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNDC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361677    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
17    41150949    rs2271539    G    A    198.76    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=16.56;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253788    GT:AD:DP:GQ:PL    0/1:5,7:12:99:229,0,170
17    41150983    rs691954    T    C    281.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253788    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
17    41151743    rs691711    G    A    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253788    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
17    41154600    rs8076790    C    T    360.84    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=21.23;ReadPosRankSum=0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253788    GT:AD:DP:GQ:PL    0/1:6,11:17:99:391,0,202
17    41154817    rs11871636    A    C    1511.93    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.632;DB;DP=78;Dels=0.0;FS=4.203;HRun=0;HaplotypeScore=0.7887;MQ=59.41;MQ0=0;MQRankSum=-0.307;QD=19.38;ReadPosRankSum=-0.476;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253788    GT:AD:DP:GQ:PL    0/1:33,45:78:99:1542,0,961
17    41164126    rs692651    A    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355653    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    41165493    rs588703    A    G    3160.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=59.74;MQ0=0;QD=35.51;SNPEFF_AMINO_ACID_CHANGE=M126V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_41165493_41165679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI35;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415816    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3194,241,0
17    41165734    rs443759    C    T    863.55    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=5.013;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=58.63;MQ0=0;MQRankSum=-1.436;QD=16.93;ReadPosRankSum=0.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246911    GT:AD:DP:GQ:PL    0/1:22,29:51:99:894,0,624
17    41165878    rs13229    C    T    373.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.93;SNPEFF_AMINO_ACID_CHANGE=N216;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_41165793_41165899;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI35;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415816    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:406,30,0
17    41167957    rs455055    C    A    460.93    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.518;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6219;MQ=59.27;MQ0=0;MQRankSum=0.077;QD=12.13;ReadPosRankSum=0.843;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246911    GT:AD:DP:GQ:PL    0/1:21,17:38:99:491,0,715
17    41170898    rs429464    T    C    255.75    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.07;MQ0=0;MQRankSum=-0.48;QD=25.57;ReadPosRankSum=0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415816    GT:AD:DP:GQ:PL    0/1:2,8:10:45.80:286,0,46
17    41249263    rs1799965    G    A    1551.37    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.623;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.44;MQ0=0;MQRankSum=-0.54;QD=12.51;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=C150;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_41249261_41249306;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRCA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393691    GT:AD:DP:GQ:PL    0/1:67,57:124:99:1581,0,1943
17    41327684    rs10684756    C    CTG    2807.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=127.9397;IndelType=I;MQ=59.65;MQ0=0;QD=51.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341165    GT:AD:DP:GQ:PL    1/1:1,53:53:99:2849,157,0
17    41328095    rs4239149    A    G    272.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341165    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:306,24,0
17    41332734    rs72831075    A    C    126.42    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=7.9;ReadPosRankSum=1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341165    GT:AD:DP:GQ:PL    0/1:10,6:16:99:156,0,337
17    41332804    rs9904555    T    C    965.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_AMINO_ACID_CHANGE=V59;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_41332803_41332834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389311    GT:AD:DP:GQ:PL    1/1:0,32:32:75.25:999,75,0
17    41368082    rs140334356    G    A    287.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.044;QD=28.72;ReadPosRankSum=1.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341165    GT:AD:DP:GQ:PL    1/1:1,9:10:4.40:318,4,0
17    41466096    rs62080664    A    G    76.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=0.0;MQ=45.22;MQ0=0;MQRankSum=-2.637;QD=6.97;ReadPosRankSum=0.717;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_41465657_41466266;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    0/1:5,6:11:99:107,0,169
17    41466108    rs62080665    G    C    79.69    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=11;Dels=0.0;FS=8.451;HRun=2;HaplotypeScore=0.0;MQ=45.22;MQ0=0;MQRankSum=-2.45;QD=7.24;ReadPosRankSum=0.336;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_41465657_41466266;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    0/1:5,6:11:99:110,0,127
17    41466120    rs66825422    GCGGCGCATGGA    G    280.51    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=172.5567;IndelType=D;MQ=45.95;MQ0=0;MQRankSum=-2.219;QD=21.58;ReadPosRankSum=-1.307;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_41465657_41466266;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    0/1:8,5:13:99:320,0,824
17    41466224    rs667082    A    C    383.72    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.224;DB;DP=18;Dels=0.0;FS=7.83;HRun=0;HaplotypeScore=0.0;MQ=36.26;MQ0=0;MQRankSum=-2.162;QD=21.32;ReadPosRankSum=0.671;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_41465657_41466266;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    0/1:3,15:18:16.27:414,0,16
17    41466230    rs62080667    T    C    377.36    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.079;DB;DP=16;Dels=0.0;FS=4.15;HRun=1;HaplotypeScore=0.0;MQ=35.91;MQ0=0;MQRankSum=-1.985;QD=23.58;ReadPosRankSum=0.714;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_41465657_41466266;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:2,14:16:2.07:407,2,0
17    41466239    rs62080668    T    C    285.94    MQFilter40    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.668;DB;DP=13;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.0;MQ=36.17;MQ0=0;MQRankSum=-1.737;QD=22.0;ReadPosRankSum=0.134;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_41465657_41466266;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    0/1:1,12:13:4.60:315,0,5
17    41466257    rs77213838    A    C    216.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=33.8;MQ0=0;QD=19.65;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_41465657_41466266;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:0,11:11:24.01:249,24,0
17    41466274    rs77555546    A    G    74.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.61;MQ0=0;QD=10.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:0,7:7:9.03:106,9,0
17    41466288    rs75013230    G    A    109.04    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.83;MQ0=0;QD=15.58;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:0,7:7:12.03:142,12,0
17    41466321    rs76757765    C    G    187.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.01;MQ0=0;QD=23.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:220,18,0
17    41466338    rs74521965    A    G    181.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.72;MQ0=0;QD=30.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:214,18,0
17    41466340    rs112419670    T    C    173.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.72;MQ0=0;QD=28.94;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:206,18,0
17    41466358    rs79178237    A    G    118.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.11;MQ0=0;QD=29.56;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
17    41466371    rs77256558    T    C    118.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.11;MQ0=0;QD=29.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087650.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341011    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
17    41561601    rs71361527    CGGAAGGA    C    1827.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=298.4108;IndelType=D;MQ=44.96;MQ0=0;QD=45.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262415    GT:AD:DP:GQ:PL    1/1:11,29:40:87.29:1869,87,0
17    41566783    rs141196624    CTCT    C    1262.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=135.6046;IndelType=D;MQ=55.88;MQ0=0;QD=45.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262415    GT:AD:DP:GQ:PL    1/1:0,28:28:81.28:1305,81,0
17    41569933    rs11870101    C    T    290.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262415    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:323,24,0
17    41577024    .    T    C    116.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.61;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262415    GT:AD:DP:GQ:PL    0/1:3,4:7:96.54:146,0,97
17    41622507    rs79868029    A    G    93.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.278;QD=7.78;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319349    GT:AD:DP:GQ:PL    0/1:8,4:12:99:123,0,256
17    41797254    rs2342312    C    G    2614.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2648,193,0
17    41846964    rs1230403    T    C    1336.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226004    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1370,102,0
17    41930093    rs11867485    G    A    154.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293396    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
17    41930241    rs139686376    CG    C    2329.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.0;HRun=2;HaplotypeScore=184.0928;IndelType=D;MQ=60.49;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293396    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2372,184,0
17    41955158    rs231521    A    G    3087.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3857;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473246    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3120,247,0
17    41956983    rs231520    T    C    42.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473246    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
17    41959808    rs124721    T    C    1140.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=Q158;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_41959713_41959879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523220    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1174,87,0
17    41960141    rs124720    A    G    1447.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520241    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1480,126,0
17    41960343    rs124719    T    C    2072.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.36;MQ0=0;QD=28.78;SNPEFF_AMINO_ACID_CHANGE=T110;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_41960271_41960420;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523220    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2105,180,0
17    41961451    rs231518    T    C    2768.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=32.57;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000461854    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2801,211,0
17    41996718    rs11079875    C    G    392.96    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.509;DB;DP=39;Dels=0.0;FS=6.927;HRun=0;HaplotypeScore=1.81;MQ=59.16;MQ0=0;MQRankSum=-0.37;QD=10.08;ReadPosRankSum=-0.902;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,17:39:99:423,0,735
17    41996733    rs231457    G    T    840.32    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=4.309;DB;DP=50;Dels=0.0;FS=3.116;HRun=1;HaplotypeScore=2.7258;MQ=59.34;MQ0=0;MQRankSum=0.792;QD=16.81;ReadPosRankSum=-0.303;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,28:50:99:870,0,596
17    42000092    rs182165403    G    A    873.06    MQFilter40    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.268;DB;DP=104;Dels=0.0;FS=1.719;HRun=0;HaplotypeScore=1.8216;MQ=36.95;MQ0=6;MQRankSum=2.291;QD=8.39;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:62,42:104:99:903,0,900
17    42000119    rs8080291    A    G    231.06    MQFilter40;QDFilter2    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=2.381;DB;DP=181;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=33.02;MQ0=9;MQRankSum=-6.069;QD=1.28;ReadPosRankSum=-0.599;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:120,61:181:99:261,0,2757
17    42030409    rs162430    G    A    245.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=18;Dels=0.0;FS=2.392;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=13.61;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360085    GT:AD:DP:GQ:PL    0/1:9,9:18:99:275,0,316
17    42030531    rs1058046    G    C    339.39    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.037;DB;DP=31;Dels=0.0;FS=1.562;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.36;QD=10.95;ReadPosRankSum=0.402;SNPEFF_AMINO_ACID_CHANGE=T72R;SNPEFF_CODON_CHANGE=aCg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42030477_42030557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360085    GT:AD:DP:GQ:PL    0/1:18,13:31:99:369,0,513
17    42030743    rs229969    G    C    85.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_AMINO_ACID_CHANGE=R37G;SNPEFF_CODON_CHANGE=Cgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42030664_42030851;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360085    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:118,12,0
17    42084067    rs55708447    T    C    41.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.71;MQ0=0;QD=13.84;SNPEFF_AMINO_ACID_CHANGE=F196;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42083897_42084077;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541745    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
17    42085150    rs228773    T    C    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=11.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206380    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:76,6,0
17    42085672    rs147086401    AATGAG    A    2223.44    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=6.214;DB;DP=77;FS=0.0;HRun=0;HaplotypeScore=458.9501;IndelType=D;MQ=54.79;MQ0=0;MQRankSum=-0.541;QD=28.88;ReadPosRankSum=-0.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000206380    GT:AD:DP:GQ:PL    0/1:40,37:77:99:2262,0,3032
17    42086180    rs640631    C    T    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541745    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    42090587    rs228778    G    C    158.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=2.637;QD=13.19;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293404    GT:AD:DP:GQ:PL    0/1:4,8:12:99:188,0,103
17    42092328    rs77536093    A    G    537.38    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.179;DB;DP=34;Dels=0.0;FS=6.139;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.711;QD=15.81;ReadPosRankSum=1.747;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_42092184_42092345;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM101;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000206380    GT:AD:DP:GQ:PL    0/1:16,18:34:99:567,0,455
17    42114672    rs2285750    T    C    329.90    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.955;QD=19.41;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293406    GT:AD:DP:GQ:PL    0/1:6,11:17:99:360,0,203
17    42152103    rs3815076    G    A    405.44    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=26;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.712;QD=15.59;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=T127;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42152048_42152138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269097    GT:AD:DP:GQ:PL    0/1:10,16:26:99:435,0,300
17    42153562    rs1046770    G    C    619.36    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.183;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.35;QD=17.2;ReadPosRankSum=-1.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225983    GT:AD:DP:GQ:PL    0/1:16,20:36:99:649,0,506
17    42156471    rs376816    A    C    100.31    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.448;DB;DP=15;Dels=0.0;FS=5.497;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.652;QD=6.69;ReadPosRankSum=0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269097    GT:AD:DP:GQ:PL    0/1:7,8:15:99:130,0,211
17    42157739    rs850856    C    T    533.36    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.565;DB;DP=34;Dels=0.0;FS=7.949;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.055;QD=15.69;ReadPosRankSum=0.528;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269097    GT:AD:DP:GQ:PL    0/1:14,20:34:99:563,0,449
17    42158310    rs377963    T    G    576.74    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=41;Dels=0.0;FS=2.931;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.038;QD=14.07;ReadPosRankSum=0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=G6PC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269097    GT:AD:DP:GQ:PL    0/1:18,23:41:99:607,0,489
17    42164885    rs228757    G    C    699.06    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=4.284;DB;DP=36;Dels=0.0;FS=1.675;HRun=1;HaplotypeScore=0.8321;MQ=59.36;MQ0=0;MQRankSum=0.188;QD=19.42;ReadPosRankSum=0.119;SNPEFF_AMINO_ACID_CHANGE=D593E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42164780_42165064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336057    GT:AD:DP:GQ:PL    0/1:13,23:36:99:729,0,358
17    42170289    rs368328    G    A    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225983    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:71,0,65
17    42170871    rs117519930    C    T    169.55    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=17;Dels=0.0;FS=1.931;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.788;QD=9.97;ReadPosRankSum=0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225983    GT:AD:DP:GQ:PL    0/1:8,9:17:99:200,0,277
17    42171206    rs454192    T    C    404.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDAC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225983    GT:AD:DP:GQ:PL    1/1:0,17:17:36.07:438,36,0
17    42225547    rs227584    A    C    1639.24    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6607;MQ=59.66;MQ0=0;MQRankSum=-0.688;QD=12.23;ReadPosRankSum=-1.83;SNPEFF_AMINO_ACID_CHANGE=T126P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42225226_42226395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245382    GT:AD:DP:GQ:PL    0/1:73,61:134:99:1669,0,2133
17    42226124    rs145117407    G    A    2301.67    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.045;DB;DP=148;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8245;MQ=59.84;MQ0=0;MQRankSum=1.75;QD=15.55;ReadPosRankSum=-0.651;SNPEFF_AMINO_ACID_CHANGE=R318Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42225226_42226395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf53;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245382    GT:AD:DP:GQ:PL    0/1:68,80:148:99:2332,0,1969
17    42232442    rs2246287    C    G    31.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.53;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245382    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:62,0,31
17    42239349    rs730228    T    C    545.78    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.726;DB;DP=50;Dels=0.0;FS=3.281;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.007;QD=10.92;ReadPosRankSum=0.596;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245382    GT:AD:DP:GQ:PL    0/1:28,22:50:99:576,0,946
17    42248346    rs7218599    A    T    1036.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=57.23;MQ0=0;QD=30.48;SNPEFF_AMINO_ACID_CHANGE=Q63H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42248074_42248458;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293414    GT:AD:DP:GQ:PL    1/1:0,33:34:81.26:1069,81,0
17    42249717    rs10628218    A    ATG    265.96    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.202;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=46.3812;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=15.64;ReadPosRankSum=1.524;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303061    GT:AD:DP:GQ:PL    0/1:10,7:17:99:305,0,221
17    42254011    rs7220138    C    G    1274.94    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.101;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6584;MQ=60.0;MQ0=0;MQRankSum=-2.758;QD=14.17;ReadPosRankSum=-0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293414    GT:AD:DP:GQ:PL    0/1:43,47:90:99:1305,0,1293
17    42254281    rs7212573    A    G    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=5.43;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=T249A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42254106_42254598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293414    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,137
17    42254527    rs7217858    T    G    31.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.71;SNPEFF_AMINO_ACID_CHANGE=S32R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42253354_42255184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf65;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303061    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
17    42255097    rs3826412    T    C    264.58    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.725;DB;DP=23;Dels=0.0;FS=9.944;HRun=0;HaplotypeScore=0.6651;MQ=52.54;MQ0=0;MQRankSum=-0.453;QD=11.5;ReadPosRankSum=-1.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASB16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293414    GT:AD:DP:GQ:PL    0/1:8,15:23:99:295,0,192
17    42268274    rs757430    C    T    2428.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6203;MQ=59.66;MQ0=0;QD=35.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN7L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389384    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2461,181,0
17    42287519    rs2071167    C    T    1301.16    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=103;Dels=0.0;FS=1.714;HRun=2;HaplotypeScore=0.8941;MQ=59.55;MQ0=0;MQRankSum=0.112;QD=12.63;ReadPosRankSum=-0.629;SNPEFF_AMINO_ACID_CHANGE=K120;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42287492_42287602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBTF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529373    GT:AD:DP:GQ:PL    0/1:49,53:103:99:1331,0,1623
17    42289838    .    C    T    377.39    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.476;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=-0.399;QD=11.44;ReadPosRankSum=-0.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530828    GT:AD:DP:GQ:PL    0/1:18,15:33:99:407,0,476
17    42290015    rs2855818    G    A    55.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8836;MQ=54.65;MQ0=0;MQRankSum=-0.55;QD=6.22;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530828    GT:AD:DP:GQ:PL    0/1:6,3:9:85.96:86,0,95
17    42335197    rs187463272    G    C    341.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.43;DB;DP=20;Dels=0.0;FS=9.631;HRun=0;HaplotypeScore=0.5784;MQ=58.84;MQ0=0;MQRankSum=1.427;QD=17.09;ReadPosRankSum=-0.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471005    GT:AD:DP:GQ:PL    0/1:8,12:20:99:372,0,264
17    42337091    rs2857082    C    T    361.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=45;Dels=0.0;FS=1.49;HRun=1;HaplotypeScore=1.7882;MQ=60.0;MQ0=0;MQRankSum=-0.638;QD=8.04;ReadPosRankSum=-1.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471005    GT:AD:DP:GQ:PL    0/1:30,15:45:99:392,0,979
17    42337976    rs2074107    G    A    563.99    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=-0.258;QD=11.51;ReadPosRankSum=1.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498270    GT:AD:DP:GQ:PL    0/1:25,24:49:99:594,0,719
17    42338248    rs2854528    A    G    86.37    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=2.65;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.35;QD=4.55;ReadPosRankSum=1.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262418    GT:AD:DP:GQ:PL    0/1:15,4:19:99:116,0,484
17    42338998    rs5035    T    G    378.96    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.415;DB;DP=31;Dels=0.0;FS=1.515;HRun=1;HaplotypeScore=0.0;MQ=58.03;MQ0=0;MQRankSum=-0.461;QD=12.22;ReadPosRankSum=1.658;SNPEFF_AMINO_ACID_CHANGE=D38A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42338943_42339004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262418    GT:AD:DP:GQ:PL    0/1:16,15:31:99:409,0,453
17    42398802    rs34365655    G    A    385.55    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.412;QD=14.28;ReadPosRankSum=-0.17;SNPEFF_AMINO_ACID_CHANGE=L150;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42398802_42398926;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537904    GT:AD:DP:GQ:PL    0/1:14,13:27:99:416,0,341
17    42428538    rs72824736    G    A    679.35    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.462;DB;DP=55;Dels=0.0;FS=1.158;HRun=1;HaplotypeScore=0.9159;MQ=59.58;MQ0=0;MQRankSum=0.363;QD=12.35;ReadPosRankSum=1.834;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM171A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293443    GT:AD:DP:GQ:PL    0/1:30,25:55:99:709,0,987
17    42449789    rs5910    G    A    240.86    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=18;Dels=0.0;FS=1.952;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.933;QD=13.38;ReadPosRankSum=1.91;SNPEFF_AMINO_ACID_CHANGE=V1021;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42449550_42449791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262407    GT:AD:DP:GQ:PL    0/1:10,8:18:99:271,0,270
17    42454463    rs850730    G    C    37.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377068    GT:AD:DP:GQ:PL    0/1:4,2:6:67.23:67,0,152
17    42455022    rs34603233    TGAGCCCCTG    T    665.91    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=3.802;DB;DP=22;FS=7.659;HRun=0;HaplotypeScore=178.8325;IndelType=D;MQ=50.61;MQ0=0;MQRankSum=-3.02;QD=30.27;ReadPosRankSum=-0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGA2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377068    GT:AD:DP:GQ:PL    0/1:13,9:22:99:705,0,1725
17    42475983    rs936019    G    C    2132.01    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.24;DB;DP=157;Dels=0.0;FS=2.03;HRun=0;HaplotypeScore=1.5226;MQ=59.85;MQ0=0;MQRankSum=1.231;QD=13.58;ReadPosRankSum=-0.522;SNPEFF_AMINO_ACID_CHANGE=T1076;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42474784_42478821;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434000    GT:AD:DP:GQ:PL    0/1:79,78:157:99:2162,0,2266
17    42483233    rs2045088    T    A    477.41    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.076;DB;DP=43;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.076;QD=11.1;ReadPosRankSum=-1.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335500    GT:AD:DP:GQ:PL    0/1:24,19:43:99:507,0,777
17    42483531    rs1377808    T    A    185.49    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.732;QD=10.91;ReadPosRankSum=-2.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335500    GT:AD:DP:GQ:PL    0/1:10,7:17:99:215,0,355
17    42501692    rs1869495    C    A    462.14    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.563;DB;DP=39;Dels=0.0;FS=5.502;HRun=0;HaplotypeScore=0.8941;MQ=59.41;MQ0=0;MQRankSum=1.345;QD=11.85;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335500    GT:AD:DP:GQ:PL    0/1:22,17:39:99:492,0,675
17    42734316    rs8065760    G    C    162.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359945    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
17    42742525    rs11656000    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425535    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:72,0,69
17    42744238    rs9907151    A    C    1823.82    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=120;Dels=0.0;FS=4.581;HRun=0;HaplotypeScore=1.8934;MQ=60.0;MQ0=0;MQRankSum=0.268;QD=15.2;ReadPosRankSum=1.785;SNPEFF_AMINO_ACID_CHANGE=N154T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42743744_42745601;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf104;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409464    GT:AD:DP:GQ:PL    0/1:61,59:120:99:1854,0,1904
17    42751607    rs6416902    C    T    610.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=35.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359945    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:643,48,0
17    42808491    rs16970956    G    A    187.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=20.88;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315005    GT:AD:DP:GQ:PL    0/1:3,6:9:97.96:218,0,98
17    42824648    rs9893320    T    C    580.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315005    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:613,48,0
17    42827673    rs3744477    G    A    2048.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526924    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2082,153,0
17    42846994    rs8070918    T    C    359.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9315;MQ=51.13;MQ0=0;MQRankSum=0.744;QD=25.69;ReadPosRankSum=-1.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200557    GT:AD:DP:GQ:PL    1/1:1,13:14:33.10:393,33,0
17    42847438    rs55882072    C    G    244.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.81;QD=11.11;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200557    GT:AD:DP:GQ:PL    0/1:11,11:22:99:275,0,299
17    42850352    rs68017435    T    C    204.72    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=27;Dels=0.0;FS=4.06;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.029;QD=7.58;ReadPosRankSum=-0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200557    GT:AD:DP:GQ:PL    0/1:15,11:27:99:235,0,428
17    42852061    rs12942192    C    T    379.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.729;DB;DP=24;Dels=0.0;FS=1.76;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.179;QD=15.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200557    GT:AD:DP:GQ:PL    0/1:9,15:24:99:410,0,266
17    42852604    rs1558083    G    T    961.63    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=57.4;MQ0=0;MQRankSum=0.47;QD=11.05;ReadPosRankSum=-0.096;SNPEFF_AMINO_ACID_CHANGE=S215;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42852580_42852679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535346    GT:AD:DP:GQ:PL    0/1:47,40:87:99:992,0,1177
17    42852610    rs1558084    T    C    2831.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9053;MQ=57.55;MQ0=0;QD=30.77;SNPEFF_AMINO_ACID_CHANGE=C217;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42852580_42852679;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535346    GT:AD:DP:GQ:PL    1/1:0,91:92:99:2864,214,0
17    42853427    rs4792955    A    G    156.36    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.381;DB;DP=24;Dels=0.0;FS=2.793;HRun=4;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.318;QD=6.51;ReadPosRankSum=0.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200557    GT:AD:DP:GQ:PL    0/1:17,7:24:99:186,0,515
17    42854053    rs55752145    G    A    151.10    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.238;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.396;QD=7.2;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200557    GT:AD:DP:GQ:PL    0/1:13,7:21:99:181,0,296
17    42854610    rs8075210    T    C    110.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.776;DB;DP=14;Dels=0.0;FS=2.48;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.226;QD=7.9;ReadPosRankSum=-0.452;SNPEFF_AMINO_ACID_CHANGE=S386;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42854534_42854633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535346    GT:AD:DP:GQ:PL    0/1:8,6:14:99:141,0,256
17    42855248    rs2070603    T    C    759.28    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.408;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=1.335;QD=12.45;ReadPosRankSum=1.947;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200557    GT:AD:DP:GQ:PL    0/1:33,26:61:99:789,0,1046
17    42855472    rs2070604    T    C    744.41    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.745;DB;DP=45;Dels=0.0;FS=13.442;HRun=2;HaplotypeScore=0.5784;MQ=59.49;MQ0=0;MQRankSum=0.085;QD=16.54;ReadPosRankSum=-0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200557    GT:AD:DP:GQ:PL    0/1:16,28:45:99:774,0,434
17    42855554    rs2070605    T    C    193.95    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=19;Dels=0.0;FS=8.675;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=10.21;ReadPosRankSum=1.325;SNPEFF_AMINO_ACID_CHANGE=I540;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42855520_42855610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAM11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535346    GT:AD:DP:GQ:PL    0/1:10,9:19:99:224,0,303
17    42925559    rs12164    C    T    1577.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_AMINO_ACID_CHANGE=D13;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42925279_42925620;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1611,117,0
17    42927628    rs2231647    A    G    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    42927721    rs1071682    G    A    115.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.515;DB;DP=18;Dels=0.0;FS=2.029;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.077;QD=6.43;ReadPosRankSum=0.702;SNPEFF_AMINO_ACID_CHANGE=S86N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42927700_42927840;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    0/1:12,6:18:99:146,0,407
17    42927965    rs2304987    G    A    130.11    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=13.01;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    0/1:4,6:10:99:160,0,135
17    42928054    rs2304986    T    C    822.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:856,66,0
17    42928200    rs117979815    C    T    285.81    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.031;QD=12.43;ReadPosRankSum=-0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    0/1:12,11:23:99:316,0,388
17    42929759    rs117345300    C    G    207.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.78;DB;DP=14;Dels=0.0;FS=10.17;HRun=1;HaplotypeScore=0.9999;MQ=58.33;MQ0=0;MQRankSum=0.068;QD=14.79;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    0/1:7,7:14:99:237,0,198
17    42929970    rs2289673    T    C    668.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:701,51,0
17    42930859    rs78620114    G    A    847.35    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=62;Dels=0.0;FS=9.394;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.686;QD=13.67;ReadPosRankSum=0.007;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    0/1:33,29:62:99:877,0,1040
17    42932244    rs2289672    C    T    333.68    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.315;DB;DP=22;Dels=0.0;FS=2.57;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=15.17;ReadPosRankSum=1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIGD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253410    GT:AD:DP:GQ:PL    0/1:10,12:22:99:364,0,242
17    42934372    rs6503405    A    G    561.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:594,51,0
17    42934694    rs2277615    T    C    274.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:307,24,0
17    42937171    rs72826899    G    A    59.33    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=7.42;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    0/1:5,3:8:89.32:89,0,158
17    42945296    rs2120276    A    G    159.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
17    42945867    rs3785890    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    42950117    rs17545736    C    G    75.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.12;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    0/1:2,3:5:65.29:106,0,65
17    42953409    rs2289674    A    G    2196.72    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.179;DB;DP=168;Dels=0.0;FS=2.295;HRun=1;HaplotypeScore=4.2734;MQ=59.86;MQ0=0;MQRankSum=0.688;QD=13.08;ReadPosRankSum=-1.291;SNPEFF_AMINO_ACID_CHANGE=T219;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42953302_42953468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402521    GT:AD:DP:GQ:PL    0/1:89,79:168:99:2227,0,2530
17    42956798    rs17628363    T    C    216.15    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=19.65;ReadPosRankSum=2.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    0/1:4,7:11:99:246,0,130
17    42957139    rs2289676    C    T    202.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
17    42957855    rs1443463    A    G    789.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:822,66,0
17    42961009    rs2289677    C    T    2028.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.59;MQ0=0;QD=36.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2062,150,0
17    42962808    rs56908739    C    T    349.88    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.087;QD=19.44;ReadPosRankSum=0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFTUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262414    GT:AD:DP:GQ:PL    0/1:7,11:18:99:380,0,230
17    42979592    rs12451394    G    A    145.17    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.83;QD=8.07;ReadPosRankSum=-0.439;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253408    GT:AD:DP:GQ:PL    0/1:11,7:18:99:175,0,294
17    42981654    rs3826425    A    G    619.07    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=14.07;ReadPosRankSum=0.28;SNPEFF_AMINO_ACID_CHANGE=K153E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42979733_42982758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM187A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331733    GT:AD:DP:GQ:PL    0/1:20,24:44:99:649,0,589
17    42989063    rs1126642    C    T    150.82    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=11.6;ReadPosRankSum=1.093;SNPEFF_AMINO_ACID_CHANGE=D270N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42989040_42989165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421021    GT:AD:DP:GQ:PL    0/1:6,7:13:99:181,0,175
17    42989088    rs2289681    C    T    232.20    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.865;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.222;QD=16.59;ReadPosRankSum=0.865;SNPEFF_AMINO_ACID_CHANGE=R261;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_42989040_42989165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421021    GT:AD:DP:GQ:PL    0/1:6,8:14:99:262,0,163
17    42990810    rs3744468    G    A    350.02    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=29;Dels=0.0;FS=9.748;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.586;QD=12.07;ReadPosRankSum=0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253408    GT:AD:DP:GQ:PL    0/1:16,13:29:99:380,0,496
17    43004541    rs8079709    G    T    65.30    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=13.06;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339151    GT:AD:DP:GQ:PL    0/1:1,4:5:30.98:95,0,31
17    43012891    rs79680842    A    G    230.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.18;QD=19.21;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339151    GT:AD:DP:GQ:PL    0/1:4,8:12:99:261,0,132
17    43102286    rs730953    A    C    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342350    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    43107449    rs72255860    TAC    T    2271.36    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=8.701;DB;DP=154;FS=2.146;HRun=0;HaplotypeScore=493.1017;IndelType=D;MQ=59.65;MQ0=0;MQRankSum=0.986;QD=14.65;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310604    GT:AD:DP:GQ:PL    0/1:86,69:154:99:2310,0,3988
17    43107589    rs73311379    C    T    885    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=4.847;DB;DP=58;Dels=0.0;FS=6.756;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=2.342;QD=15.26;ReadPosRankSum=0.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310604    GT:AD:DP:GQ:PL    0/1:28,30:58:99:915,0,776
17    43131480    rs4793172    A    T    622.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAKD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310604    GT:AD:DP:GQ:PL    1/1:0,21:21:48.16:655,48,0
17    43163756    rs6416904    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258960    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
17    43163851    rs6503422    T    C    693.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258960    GT:AD:DP:GQ:PL    1/1:0,24:24:57.18:726,57,0
17    43170907    rs2239921    C    T    132.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258960    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
17    43171154    rs1132898    C    T    194.88    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=30;Dels=0.0;FS=5.969;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-1.317;QD=6.5;ReadPosRankSum=-0.612;SNPEFF_AMINO_ACID_CHANGE=L163;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43171053_43171171;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258960    GT:AD:DP:GQ:PL    0/1:19,11:30:99:225,0,517
17    43176632    rs877598    A    C    98.41    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.313;QD=7.57;ReadPosRankSum=-1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543908    GT:AD:DP:GQ:PL    0/1:8,5:13:99:128,0,275
17    43180617    rs12103720    C    T    60.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.67;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543908    GT:AD:DP:GQ:PL    0/1:4,3:7:90.65:91,0,143
17    43181287    rs4793167    A    G    2261.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258960    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2295,181,0
17    43181325    rs2269745    A    G    534.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5225;MQ=60.0;MQ0=0;MQRankSum=-0.836;QD=14.06;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258960    GT:AD:DP:GQ:PL    0/1:19,19:38:99:564,0,672
17    43190658    rs2285426    C    T    75.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=0.406;QD=10.81;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258960    GT:AD:DP:GQ:PL    0/1:4,3:7:85.88:106,0,86
17    43191099    rs2864881    T    C    35.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.94;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258960    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:66,0,69
17    43192549    rs75518897    T    TC    228.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=15.1881;IndelType=I;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_43192549_43192611;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLCD3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000322765    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:270,18,0
17    43192821    rs713101    A    G    74.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=7.46;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=L484;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43192711_43192857;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLCD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322765    GT:AD:DP:GQ:PL    0/1:6,4:10:99:105,0,105
17    43197593    rs2129732    G    A    140.52    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.689;QD=11.71;ReadPosRankSum=1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLCD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538093    GT:AD:DP:GQ:PL    0/1:7,5:12:99:171,0,244
17    43213772    rs2306828    A    C    2959.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4105;MQ=59.16;MQ0=0;MQRankSum=1.267;QD=35.66;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321854    GT:AD:DP:GQ:PL    1/1:1,82:83:99:2993,232,0
17    43216281    rs4986172    C    T    73.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321854    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:106,9,0
17    43226477    rs67016906    TC    T    857.87    PASS    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=4.47;DB;DP=56;FS=4.539;HRun=1;HaplotypeScore=199.8971;IndelType=D;MQ=56.66;MQ0=0;MQRankSum=0.042;QD=15.32;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACBD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321854    GT:AD:DP:GQ:PL    0/1:33,23:56:99:897,0,826
17    43226887    rs12051846    A    G    208.10    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=13;Dels=0.0;FS=5.332;HRun=0;HaplotypeScore=0.9332;MQ=58.2;MQ0=0;MQRankSum=0.689;QD=16.01;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=E110;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43224684_43229468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332499    GT:AD:DP:GQ:PL    0/1:6,7:13:99:238,0,151
17    43227214    rs1044977    T    C    527.76    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.598;DB;DP=56;Dels=0.0;FS=4.347;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.026;QD=9.42;ReadPosRankSum=0.563;SNPEFF_AMINO_ACID_CHANGE=D219;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43224684_43229468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXIM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332499    GT:AD:DP:GQ:PL    0/1:34,22:56:99:558,0,1116
17    43316520    rs1023995    T    C    158.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328118    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
17    43319770    rs1801353    C    T    1690.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=L305;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43319708_43319832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMNL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539884    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1723,126,0
17    43333125    rs11651968    C    T    2065.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.55;SNPEFF_AMINO_ACID_CHANGE=V121M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43332482_43333440;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543122    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2098,156,0
17    43333785    rs34715848    AAGAC    A    3508.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.0;HRun=0;HaplotypeScore=356.7714;IndelType=D;MQ=56.03;MQ0=0;QD=50.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331780    GT:AD:DP:GQ:PL    1/1:4,65:68:99:3508,193,0
17    43334005    rs9908267    G    C    70.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331780    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
17    43334649    rs60163605    C    A    179.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331780    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:213,18,0
17    43334653    rs58314091    T    C    235.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331780    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:269,21,0
17    43342141    rs1047833    G    C    466.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_AMINO_ACID_CHANGE=V901;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43340488_43342167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344686    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:500,39,0
17    43342306    rs2285674    C    A    44.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344686    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    43344073    rs2074293    G    A    513.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376926    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:546,42,0
17    43364293    rs56405343    C    CG    1379.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=1;HaplotypeScore=82.9805;IndelType=I;MQ=58.76;MQ0=0;QD=39.4;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K14;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000344686    GT:AD:DP:GQ:PL    1/1:3,32:35:96.32:1421,96,0
17    43473307    rs62064597    C    G    49.86    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=13;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=1.7329;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=3.84;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526484    GT:AD:DP:GQ:PL    0/1:7,6:13:79.86:80,0,194
17    43480848    rs1230100    G    C    75.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.811;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.73;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527678    GT:AD:DP:GQ:PL    0/1:3,4:7:80.62:105,0,81
17    43507008    rs2959953    G    C    106.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_AMINO_ACID_CHANGE=P213R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43506719_43507663;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290470    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
17    43516738    rs1317946    A    C    259.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:293,21,0
17    43517054    rs62064657    G    A    705.96    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.93;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.66;MQ0=0;MQRankSum=0.235;QD=19.08;ReadPosRankSum=0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:14,23:37:99:736,0,402
17    43522775    rs67471653    TTGTG    T    580.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.832;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=121.3278;IndelType=D;MQ=45.44;MQ0=0;MQRankSum=-0.283;QD=20.74;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:14,14:26:99:620,0,1027
17    43535952    rs4588023    C    T    37.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.46;MQ0=0;QD=18.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:68,6,0
17    43545893    rs1879581    T    C    189.87    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.164;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.04;MQ0=0;MQRankSum=0.47;QD=6.55;ReadPosRankSum=-1.27;SNPEFF_AMINO_ACID_CHANGE=T241;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43545575_43545959;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:18,11:29:99:220,0,533
17    43546057    rs62065399    G    T    211    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.06;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.02;MQ0=1;MQRankSum=-0.795;QD=11.11;ReadPosRankSum=1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:10,9:19:99:241,0,287
17    43551613    rs62065404    C    T    134.13    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=35.02;MQ0=0;MQRankSum=0.0;QD=13.41;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:4,6:10:99:164,0,109
17    43551672    rs2037442    C    T    236.47    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.09;MQ0=0;MQRankSum=1.269;QD=10.75;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:13,9:22:99:266,0,408
17    43552537    rs71238846    G    A    540.57    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.873;DB;DP=52;Dels=0.0;FS=2.597;HRun=0;HaplotypeScore=0.8667;MQ=45.08;MQ0=2;MQRankSum=0.451;QD=10.2;ReadPosRankSum=-1.973;SNPEFF_AMINO_ACID_CHANGE=C195;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43552466_43553092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:24,28:52:99:571,0,584
17    43552717    rs147243132    G    C    354.24    MQFilter40    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.434;DB;DP=93;Dels=0.0;FS=10.719;HRun=0;HaplotypeScore=0.9998;MQ=29.82;MQ0=15;MQRankSum=-1.073;QD=3.81;ReadPosRankSum=-1.366;SNPEFF_AMINO_ACID_CHANGE=S135;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43552466_43553092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:63,30:93:99:384,0,1126
17    43552812    rs71227520    A    G    165.91    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=66;Dels=0.0;FS=31.91;HRun=0;HaplotypeScore=0.0;MQ=41.59;MQ0=7;MQRankSum=-4.014;QD=2.51;ReadPosRankSum=0.357;SNPEFF_AMINO_ACID_CHANGE=L104;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43552466_43553092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:46,20:66:99:196,0,1445
17    43552921    rs12452273    C    T    534.15    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=48;Dels=0.0;FS=1.166;HRun=0;HaplotypeScore=0.0;MQ=49.06;MQ0=0;MQRankSum=-0.247;QD=11.13;ReadPosRankSum=1.001;SNPEFF_AMINO_ACID_CHANGE=R105;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43552466_43553092;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446609    GT:AD:DP:GQ:PL    0/1:28,20:48:99:564,0,815
17    43553150    rs7218394    T    C    185.75    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=13;Dels=0.0;FS=3.041;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.694;QD=14.29;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:4,9:13:99:216,0,140
17    43555253    rs56192752    A    G    175.87    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=19;Dels=0.0;FS=2.271;HRun=1;HaplotypeScore=1.9565;MQ=58.68;MQ0=0;MQRankSum=0.634;QD=9.26;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421073    GT:AD:DP:GQ:PL    0/1:10,9:19:99:206,0,345
17    43611627    .    T    C    94.41    MQFilter40    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=21.06;MQ0=10;MQRankSum=2.039;QD=2.48;ReadPosRankSum=0.822;SNPEFF_AMINO_ACID_CHANGE=M110T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43611566_43611631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091132.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253803    GT:AD:DP:GQ:PL    0/1:28,8:38:99:124,0,279
17    43611652    rs143978855    A    T    239.29    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4875;MQ=25.78;MQ0=8;MQRankSum=-0.714;QD=7.25;ReadPosRankSum=-1.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091132.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253803    GT:AD:DP:GQ:PL    1/1:8,25:33:29.99:272,30,0
17    43611770    .    C    A    31.82    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=20.46;MQ0=2;QD=6.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC091132.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253803    GT:AD:DP:GQ:PL    1/1:3,2:5:6.01:63,6,0
17    43664231    rs28428892    T    G    69.14    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.782;DB;DP=24;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=36.98;MQ0=3;MQRankSum=-3.908;QD=2.88;ReadPosRankSum=-0.458;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,14:24:99:99,0,338
17    43664335    rs62064391    C    G    210.87    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=14;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.8321;MQ=40.92;MQ0=0;MQRankSum=-2.855;QD=15.06;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,9:14:88.66:241,0,89
17    43685698    rs444967    A    G    140.80    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9931;MQ=45.49;MQ0=1;MQRankSum=-0.736;QD=20.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS26P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393490    GT:AD:DP:GQ:PL    0/1:1,6:7:13.50:171,0,13
17    43685707    rs430688    T    C    99.80    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9931;MQ=44.31;MQ0=1;MQRankSum=-0.731;QD=16.63;ReadPosRankSum=0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS26P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393490    GT:AD:DP:GQ:PL    0/1:1,5:6:14.58:130,0,15
17    43685826    rs413519    A    G    862.97    PASS    AB=0.293;AC=1;AF=0.50;AN=2;BaseQRankSum=0.186;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=50.27;MQ0=0;MQRankSum=-0.788;QD=21.05;ReadPosRankSum=0.903;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS26P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393490    GT:AD:DP:GQ:PL    0/1:12,29:41:99:893,0,324
17    43686419    rs385199    A    C    689.55    PASS    AB=0.279;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.05;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.58;MQ0=0;MQRankSum=-0.799;QD=16.04;ReadPosRankSum=0.745;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS26P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393490    GT:AD:DP:GQ:PL    0/1:12,31:43:99:720,0,372
17    43686420    rs440778    A    G    769.94    PASS    AB=0.293;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.504;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.19;MQ0=0;MQRankSum=-0.673;QD=18.78;ReadPosRankSum=1.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPS26P8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393490    GT:AD:DP:GQ:PL    0/1:12,29:41:99:800,0,379
17    43713925    rs241041    A    G    43.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
17    43894102    rs28364025    T    C    89.86    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=14.98;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:1,5:6:26.72:120,0,27
17    43894159    rs28364023    C    T    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    43898963    rs17689653    A    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,71
17    43907639    rs16940662    C    A    117.36    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.8321;MQ=52.1;MQ0=0;MQRankSum=1.532;QD=10.67;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:5,6:11:99:147,0,116
17    43907641    rs3029044    C    CAGGTGG    496.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;FS=5.441;HRun=0;HaplotypeScore=61.0999;IndelType=I;MQ=51.25;MQ0=0;MQRankSum=-1.453;QD=49.61;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:5,5:10:99:535,0,333
17    43907745    rs1876831    C    T    247.54    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6567;MQ=56.62;MQ0=0;MQRankSum=1.467;QD=17.68;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:5,9:14:99:278,0,159
17    43907896    rs16940665    T    C    839.02    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.089;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2437;MQ=58.73;MQ0=0;MQRankSum=-0.436;QD=9.12;ReadPosRankSum=1.831;SNPEFF_AMINO_ACID_CHANGE=T122;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43907783_43907936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339069    GT:AD:DP:GQ:PL    0/1:56,36:92:99:869,0,1746
17    43907966    rs16940668    G    A    512.18    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.994;DB;DP=52;Dels=0.0;FS=12.745;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;MQRankSum=-0.26;QD=9.66;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:32,20:52:99:542,0,898
17    43910402    rs17689948    G    C    424.55    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.068;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=0.411;QD=16.98;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:11,14:25:99:455,0,374
17    43910507    rs16940674    C    T    957.60    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=85;Dels=0.0;FS=5.628;HRun=1;HaplotypeScore=1.581;MQ=60.0;MQ0=0;MQRankSum=-0.664;QD=11.27;ReadPosRankSum=-0.357;SNPEFF_AMINO_ACID_CHANGE=C157;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43910504_43910576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339069    GT:AD:DP:GQ:PL    0/1:48,37:85:99:988,0,1482
17    43910653    rs242950    T    C    862.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:896,69,0
17    43911352    rs1876830    C    T    451.37    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.054;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.88;QD=13.28;ReadPosRankSum=1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:18,16:34:99:481,0,495
17    43911424    rs41457044    C    T    360.90    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=31;Dels=0.0;FS=3.565;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.913;QD=11.64;ReadPosRankSum=-0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:16,15:31:99:391,0,366
17    43911443    rs1876829    T    C    425.18    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.31;DB;DP=29;Dels=0.0;FS=1.583;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.126;QD=14.66;ReadPosRankSum=0.574;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:15,14:29:99:455,0,326
17    43911525    rs1876828    C    T    188.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=18.9;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:4,6:10:99:219,0,129
17    43911832    rs1876827    T    C    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:74,0,32
17    43911898    rs16940677    C    T    115.92    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=14.49;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    0/1:3,5:8:99:146,0,105
17    43912159    rs16940681    G    C    533.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.085;DB;DP=45;Dels=0.0;FS=12.519;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=1.564;QD=11.85;ReadPosRankSum=2.275;SNPEFF_AMINO_ACID_CHANGE=E280Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43911990_43912267;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339069    GT:AD:DP:GQ:PL    0/1:25,20:45:99:563,0,846
17    43912342    rs28364032    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRHR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293493    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    43922640    rs17763658    G    A    410.70    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.777;DB;DP=35;Dels=0.0;FS=1.367;HRun=0;HaplotypeScore=0.734;MQ=58.13;MQ0=0;MQRankSum=0.5;QD=11.73;ReadPosRankSum=-0.845;SNPEFF_AMINO_ACID_CHANGE=R123Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:18,17:35:99:441,0,373
17    43922942    rs62621252    T    C    377.97    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.328;DB;DP=40;Dels=0.0;FS=4.925;HRun=1;HaplotypeScore=1.8401;MQ=60.0;MQ0=0;MQRankSum=-0.571;QD=9.45;ReadPosRankSum=1.42;SNPEFF_AMINO_ACID_CHANGE=S224P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:25,14:40:99:408,0,740
17    43923266    rs117598307    G    A    459.52    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=33;Dels=0.0;FS=6.327;HRun=0;HaplotypeScore=0.0;MQ=58.15;MQ0=0;MQRankSum=0.323;QD=13.92;ReadPosRankSum=1.311;SNPEFF_AMINO_ACID_CHANGE=A332T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:14,19:33:99:490,0,431
17    43923654    rs12185233    G    C    683.51    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=2.339;DB;DP=60;Dels=0.0;FS=2.212;HRun=2;HaplotypeScore=0.9867;MQ=59.23;MQ0=0;MQRankSum=-1.051;QD=11.39;ReadPosRankSum=0.943;SNPEFF_AMINO_ACID_CHANGE=R461P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:34,26:60:99:714,0,1048
17    43923683    rs12185268    A    G    564.67    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=54;Dels=0.0;FS=7.707;HRun=1;HaplotypeScore=0.9665;MQ=59.14;MQ0=0;MQRankSum=-1.1;QD=10.46;ReadPosRankSum=-0.519;SNPEFF_AMINO_ACID_CHANGE=I471V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:32,22:54:99:595,0,1072
17    43923703    rs12185235    C    T    442.47    PASS    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=47;Dels=0.0;FS=9.356;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.188;QD=9.41;ReadPosRankSum=-0.675;SNPEFF_AMINO_ACID_CHANGE=T477;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:30,17:47:99:472,0,1019
17    43923898    rs114821961    A    G    1183.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.36;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=S542;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    1/1:0,37:37:96.27:1217,96,0
17    43923934    rs11079725    T    C    665.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.167;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.13;MQ0=0;MQRankSum=-0.186;QD=14.78;ReadPosRankSum=0.981;SNPEFF_AMINO_ACID_CHANGE=D554;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:18,27:45:99:695,0,520
17    43924073    rs12373123    T    C    755.07    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=51;Dels=0.0;FS=1.133;HRun=2;HaplotypeScore=1.6671;MQ=57.98;MQ0=0;MQRankSum=-1.536;QD=14.81;ReadPosRankSum=1.19;SNPEFF_AMINO_ACID_CHANGE=S601P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:20,31:51:99:785,0,612
17    43924130    rs111430241    G    A    446.26    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.042;DB;DP=33;Dels=0.0;FS=1.745;HRun=0;HaplotypeScore=0.5784;MQ=58.3;MQ0=0;MQRankSum=0.2;QD=13.52;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=G620R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:14,19:33:99:476,0,463
17    43924200    rs12373142    C    G    339.09    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.819;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.738;QD=10.28;ReadPosRankSum=2.071;SNPEFF_AMINO_ACID_CHANGE=P643R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:16,17:33:99:369,0,494
17    43924219    rs12373124    T    C    459.84    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.486;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.832;QD=13.52;ReadPosRankSum=1.041;SNPEFF_AMINO_ACID_CHANGE=H649;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:15,19:34:99:490,0,439
17    43924231    rs12373140    G    A    438.62    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.981;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.021;QD=14.15;ReadPosRankSum=0.22;SNPEFF_AMINO_ACID_CHANGE=Q653;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_43922256_43924438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:13,18:31:99:469,0,387
17    43924337    rs116553240    A    C    211.41    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=14;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=15.1;ReadPosRankSum=-0.8;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    0/1:5,9:14:99:241,0,132
17    43924412    rs116030398    T    C    209.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217771.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329196    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
17    44039691    rs17650901    A    G    130.18    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.9;MQ0=0;MQRankSum=-0.854;QD=7.66;ReadPosRankSum=1.256;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415613    GT:AD:DP:GQ:PL    0/1:11,6:17:99:160,0,360
17    44049133    rs117878895    T    C    158.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=9.89;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:10,6:16:99:188,0,321
17    44049329    rs117250657    C    T    146.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.372;DB;DP=16;Dels=0.0;FS=11.139;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.215;QD=9.13;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:8,8:16:99:176,0,233
17    44051846    rs1800547    A    G    54.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-0.988;QD=9.16;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:3,3:6:84.94:85,0,98
17    44055638    rs754513    T    A    508.68    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=31;Dels=0.0;FS=3.452;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=16.41;ReadPosRankSum=-0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:14,17:31:99:539,0,442
17    44055647    rs118164267    A    T    524.20    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.257;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7675;MQ=60.0;MQ0=0;MQRankSum=1.038;QD=15.88;ReadPosRankSum=-1.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:14,19:33:99:554,0,436
17    44060775    rs63750417    C    T    180.80    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=10.04;ReadPosRankSum=1.317;SNPEFF_AMINO_ACID_CHANGE=P202L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44060544_44061296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:10,8:18:99:211,0,285
17    44061023    rs62063786    G    A    404.68    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DB;DP=40;Dels=0.0;FS=6.928;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.563;QD=10.12;ReadPosRankSum=0.15;SNPEFF_AMINO_ACID_CHANGE=D285N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44060544_44061296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:22,18:40:99:435,0,684
17    44061036    rs117070738    T    C    375.59    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.605;DB;DP=34;Dels=0.0;FS=7.712;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=-0.466;QD=11.05;ReadPosRankSum=-0.673;SNPEFF_AMINO_ACID_CHANGE=V289A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44060544_44061296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:18,16:34:99:406,0,549
17    44061278    rs17651549    C    T    1092.17    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=3.032;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.5579;MQ=59.72;MQ0=0;MQRankSum=0.972;QD=13.16;ReadPosRankSum=0.886;SNPEFF_AMINO_ACID_CHANGE=R370W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44060544_44061296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:42,41:83:99:1122,0,1199
17    44064208    rs117507101    G    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:2,2:4:64.96:72,0,65
17    44064334    rs62063793    T    C    94.80    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=7.9;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:7,5:12:99:125,0,261
17    44067046    rs76357066    G    A    77.64    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.41;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:108,0,28
17    44067400    rs117701706    T    C    1940.13    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.921;DB;DP=134;DS;Dels=0.0;FS=0.951;HRun=3;HaplotypeScore=0.9999;MQ=59.66;MQ0=0;MQRankSum=0.56;QD=14.48;ReadPosRankSum=-0.506;SNPEFF_AMINO_ACID_CHANGE=S447P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44067244_44067441;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:62,72:134:99:1970,0,1997
17    44067508    rs79447161    A    G    294.19    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.581;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.403;QD=12.79;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:13,10:23:99:324,0,440
17    44067546    rs17651754    T    C    30.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=3.77;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:5,3:8:60.17:60,0,188
17    44067682    rs10445338    G    A    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    44068924    rs115378142    G    A    1454.40    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.078;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4742;MQ=59.55;MQ0=0;MQRankSum=-1.56;QD=14.26;ReadPosRankSum=0.771;SNPEFF_AMINO_ACID_CHANGE=P118;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44068826_44068952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334239    GT:AD:DP:GQ:PL    0/1:46,56:102:99:1484,0,1302
17    44071294    rs62063845    T    C    350.16    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=26;Dels=0.0;FS=1.598;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.054;QD=13.47;ReadPosRankSum=-1.312;SNPEFF_AMINO_ACID_CHANGE=T504;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44071290_44071343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344290    GT:AD:DP:GQ:PL    0/1:12,14:26:99:380,0,396
17    44073739    rs117200923    G    A    410.43    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.859;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6615;MQ=58.7;MQ0=0;MQRankSum=1.898;QD=14.15;ReadPosRankSum=0.502;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:14,15:29:99:440,0,411
17    44073889    rs114553892    A    G    239.42    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.888;DB;DP=22;Dels=0.0;FS=1.801;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=10.88;ReadPosRankSum=0.462;SNPEFF_AMINO_ACID_CHANGE=A133;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44073765_44074030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347967    GT:AD:DP:GQ:PL    0/1:12,10:22:99:269,0,389
17    44073973    rs17652121    T    C    124.07    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.793;QD=7.75;ReadPosRankSum=-0.906;SNPEFF_AMINO_ACID_CHANGE=N109;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44073765_44074030;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431008    GT:AD:DP:GQ:PL    0/1:11,5:16:99:154,0,365
17    44074133    rs117562189    G    A    66.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=13.32;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:2,3:5:69.42:97,0,69
17    44076466    rs62063856    A    G    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:68,0,32
17    44076665    rs62063857    A    G    248.55    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.132;DB;DP=22;Dels=0.0;FS=1.707;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.363;QD=11.3;ReadPosRankSum=0.231;SNPEFF_AMINO_ACID_CHANGE=Q7R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44076616_44077060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537309    GT:AD:DP:GQ:PL    0/1:12,10:22:99:279,0,327
17    44077044    rs115237397    T    C    183.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:216,18,0
17    44091724    rs75534191    G    A    66.27    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=6.63;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:6,4:10:96.26:96,0,224
17    44101563    rs118104841    T    C    506.91    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.727;DB;DP=34;Dels=0.0;FS=2.509;HRun=0;HaplotypeScore=0.5784;MQ=59.32;MQ0=0;MQRankSum=-0.052;QD=14.91;ReadPosRankSum=0.192;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415613    GT:AD:DP:GQ:PL    0/1:14,20:34:99:537,0,414
17    44108906    rs34579536    A    G    268.75    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.37;DB;DP=24;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.831;QD=11.2;ReadPosRankSum=-0.154;SNPEFF_AMINO_ACID_CHANGE=I1085T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44107334_44109069;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:11,13:24:99:299,0,341
17    44109248    rs55881134    G    A    83.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.727;QD=16.62;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:2,3:5:29.19:113,0,29
17    44109474    rs7220988    G    A    640.25    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.957;DB;DP=44;Dels=0.0;FS=2.883;HRun=0;HaplotypeScore=1.4679;MQ=60.0;MQ0=0;MQRankSum=-0.486;QD=14.55;ReadPosRankSum=0.46;SNPEFF_AMINO_ACID_CHANGE=P1010L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44109413_44109665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:20,23:44:99:670,0,529
17    44109769    rs1076222    C    G    84.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.756;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.973;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=5.66;ReadPosRankSum=-0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:10,5:15:99:115,0,318
17    44110532    rs36076725    G    A    37.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=3.31;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=6.24;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=F211;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44110446_44110558;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393476    GT:AD:DP:GQ:PL    0/1:4,2:6:67.42:67,0,98
17    44110541    rs111900165    G    A    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.79;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=D208;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44110446_44110558;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393476    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,105
17    44110670    rs115228146    C    G    180.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=18.01;ReadPosRankSum=-1.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262410    GT:AD:DP:GQ:PL    0/1:4,6:10:99:210,0,134
17    44110888    rs117808940    A    T    226.79    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=11.34;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:11,9:20:99:257,0,320
17    44111613    rs17574604    A    G    232.42    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9226;MQ=60.0;MQ0=0;MQRankSum=0.654;QD=6.46;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=F154;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44111527_44111651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393476    GT:AD:DP:GQ:PL    0/1:24,12:36:99:262,0,721
17    44115886    rs12150090    C    T    93.62    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.312;QD=7.2;ReadPosRankSum=1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:9,4:13:99:124,0,282
17    44116238    rs41437445    G    A    176.33    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=19.59;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:2,7:9:48.16:206,0,48
17    44116312    rs117300652    T    C    608.81    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=4.16;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9784;MQ=60.0;MQ0=0;MQRankSum=1.235;QD=18.45;ReadPosRankSum=-1.842;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:14,18:33:99:639,0,306
17    44116950    rs7221390    T    G    187.83    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.562;QD=12.52;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:8,7:15:99:218,0,286
17    44117119    rs34043286    A    G    795.88    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.888;DB;DP=64;Dels=0.0;FS=0.99;HRun=1;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=-0.629;QD=12.44;ReadPosRankSum=0.297;SNPEFF_AMINO_ACID_CHANGE=S718P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44117068_44117250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:36,28:64:99:826,0,1176
17    44117397    rs10514897    A    G    106.98    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=11.89;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,171
17    44128125    rs12150447    A    C    131.71    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=10.98;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:7,5:12:99:162,0,229
17    44144152    rs62060798    T    C    86.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=9.66;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:4,5:9:99:117,0,140
17    44144993    rs144838667    C    G    1108.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=R525P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44144915_44145033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1141,87,0
17    44159631    rs111913701    T    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    44159672    rs111519055    A    G    111.99    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=16.0;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:2,5:7:58.97:142,0,59
17    44159695    rs77925835    C    T    259.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.355;QD=17.28;ReadPosRankSum=0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:6,9:15:99:289,0,166
17    44159725    rs17659953    C    T    403.36    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.093;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.155;QD=17.54;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:10,13:23:99:433,0,332
17    44159849    rs17576165    T    C    808.42    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.736;DB;DP=49;Dels=0.0;FS=1.142;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.397;QD=16.5;ReadPosRankSum=0.641;SNPEFF_AMINO_ACID_CHANGE=P497;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44159807_44159908;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:20,29:49:99:838,0,600
17    44159988    rs117188088    G    A    103.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,144
17    44160050    rs62060852    G    A    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    44170850    rs57118865    AAT    A    120.43    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;FS=3.332;HRun=0;HaplotypeScore=27.4571;IndelType=D;MQ=62.36;MQ0=0;MQRankSum=0.684;QD=13.38;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:4,5:9:99:159,0,124
17    44172205    rs66674327    CA    C    80.61    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=35.2818;IndelType=D;MQ=60.73;MQ0=0;MQRankSum=0.633;QD=6.72;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:7,5:12:99:120,0,240
17    44248042    rs2532271    G    A    460.77    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.449;QD=17.72;ReadPosRankSum=0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:10,16:26:99:491,0,310
17    44248769    rs1881193    T    C    1360.83    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=1.403;DB;DP=79;Dels=0.0;FS=5.833;HRun=1;HaplotypeScore=2.9396;MQ=59.42;MQ0=0;MQRankSum=-0.448;QD=17.23;ReadPosRankSum=-0.084;SNPEFF_AMINO_ACID_CHANGE=R247;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44248221_44249598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:36,43:79:99:1391,0,1150
17    44248814    rs1881194    G    A    1455.69    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.61;DB;DP=81;Dels=0.0;FS=3.145;HRun=1;HaplotypeScore=1.9664;MQ=60.0;MQ0=0;MQRankSum=0.024;QD=17.97;ReadPosRankSum=-0.543;SNPEFF_AMINO_ACID_CHANGE=S232;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44248221_44249598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:33,48:81:99:1486,0,1106
17    44248837    rs35643216    T    C    597.88    PASS    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.799;DB;DP=88;Dels=0.0;FS=2.006;HRun=0;HaplotypeScore=2.7688;MQ=59.74;MQ0=0;MQRankSum=-0.704;QD=6.79;ReadPosRankSum=-0.38;SNPEFF_AMINO_ACID_CHANGE=N225D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44248221_44249598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:63,25:88:99:628,0,2136
17    44249096    rs17662889    A    C    1401.98    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=2.77;DB;DP=193;Dels=0.0;FS=1.257;HRun=0;HaplotypeScore=1.8401;MQ=59.76;MQ0=0;MQRankSum=-0.075;QD=7.26;ReadPosRankSum=-0.733;SNPEFF_AMINO_ACID_CHANGE=L138;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44248221_44249598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:136,57:193:99:1432,0,4347
17    44249199    rs117830374    T    G    638.61    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.988;DB;DP=106;Dels=0.0;FS=5.774;HRun=0;HaplotypeScore=3.5349;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=6.02;ReadPosRankSum=-0.355;SNPEFF_AMINO_ACID_CHANGE=K104T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44248221_44249598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:78,28:106:99:669,0,2851
17    44249621    rs2696662    A    G    113.38    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.876;QD=12.6;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1267;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262419    GT:AD:DP:GQ:PL    0/1:4,5:9:99:143,0,140
17    44271395    rs74569588    G    T    98.01    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.571;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=-0.786;QD=4.46;ReadPosRankSum=-0.698;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC217773.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398275    GT:AD:DP:GQ:PL    0/1:16,5:22:99:128,0,475
17    44336866    rs2429443    T    C    352.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.52;MQ0=10;QD=15.31;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,23:23:30.08:385,30,0
17    44336943    rs62623402    C    T    244.52    MQFilter40    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.832;DB;DP=45;Dels=0.0;FS=11.444;HRun=0;HaplotypeScore=0.0;MQ=27.09;MQ0=13;MQRankSum=-2.077;QD=5.43;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,22:45:99:275,0,444
17    44336962    rs2429442    G    A    147.58    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=44;Dels=0.0;FS=3.506;HRun=0;HaplotypeScore=0.9867;MQ=28.52;MQ0=9;MQRankSum=-2.867;QD=3.35;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:29,15:44:99:178,0,610
17    44336976    rs2469937    C    T    491.60    MQFilter40    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.012;DB;DP=44;Dels=0.0;FS=11.243;HRun=1;HaplotypeScore=0.6651;MQ=30.93;MQ0=9;MQRankSum=3.727;QD=11.17;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:19,25:44:99:522,0,228
17    44336997    rs2532351    C    G    120.34    MQFilter40    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.379;DB;DP=30;Dels=0.0;FS=5.008;HRun=0;HaplotypeScore=0.0;MQ=29.61;MQ0=8;MQRankSum=-3.612;QD=4.01;ReadPosRankSum=1.904;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,19:30:99:150,0,289
17    44337209    rs112008792    C    T    53.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=9;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=46.62;MQ0=0;MQRankSum=-0.956;QD=5.96;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,3:9:83.62:84,0,169
17    44337429    rs36061720    G    C    319.52    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.227;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=41.53;MQ0=0;MQRankSum=2.093;QD=21.3;ReadPosRankSum=-0.794;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,12:15:39.92:350,0,40
17    44374710    .    A    G    150.34    MQFilter40;QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.575;DP=243;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.24;MQ0=152;MQRankSum=0.476;QD=0.62;ReadPosRankSum=-0.203;SNPEFF_AMINO_ACID_CHANGE=P737;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44372497_44375108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320254    GT:AD:DP:GQ:PL    0/1:189,54:243:99:180,0,956
17    44409787    .    A    C    95.44    MQFilter40    AB=0.211;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=19.84;MQ0=11;MQRankSum=0.922;QD=5.02;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434041    GT:AD:DP:GQ:PL    0/1:4,15:19:48.81:125,0,49
17    44410016    rs138450775    C    T    519.03    MQFilter40    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.674;DB;DP=165;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8262;MQ=23.97;MQ0=70;MQRankSum=1.752;QD=3.15;ReadPosRankSum=0.381;SNPEFF_AMINO_ACID_CHANGE=L1601;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44409918_44410022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320254    GT:AD:DP:GQ:PL    0/1:122,43:165:99:549,0,2160
17    44410179    rs273534    T    C    231.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.35;MQ0=3;QD=19.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434041    GT:AD:DP:GQ:PL    1/1:0,12:12:24.06:265,24,0
17    44410243    rs273535    A    T    293.06    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=16;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=37.68;MQ0=2;MQRankSum=1.768;QD=18.32;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL17B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434041    GT:AD:DP:GQ:PL    0/1:6,10:16:76.33:323,0,76
17    44606090    .    CA    C    38.71    QDFilter2    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DP=33;FS=0.0;HRun=17;HaplotypeScore=181.2379;IndelType=D;MQ=37.92;MQ0=1;MQRankSum=0.022;QD=1.14;ReadPosRankSum=0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329240    GT:AD:DP:GQ:PL    0/1:21,10:33:77.74:78,0,308
17    44625866    .    A    C    172.17    MQFilter40;QDFilter2    AB=0.27;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DP=226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.56;MQ0=217;MQRankSum=1.179;QD=0.76;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=S1121R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44625678_44627209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333412    GT:AD:DP:GQ:PL    0/1:61,165:226:22.35:202,0,22
17    44625928    rs151267673    C    A    692.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=206;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7262;MQ=9.57;MQ0=177;QD=3.36;SNPEFF_AMINO_ACID_CHANGE=F1141L;SNPEFF_CODON_CHANGE=ttC/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44625678_44627209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333412    GT:AD:DP:GQ:PL    1/1:0,205:206:74.95:726,75,0
17    44626036    .    G    A    160.04    MQFilter40;QDFilter2    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.15;MQ0=85;MQRankSum=0.419;QD=1.06;ReadPosRankSum=0.579;SNPEFF_AMINO_ACID_CHANGE=R1177;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44625678_44627209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333412    GT:AD:DP:GQ:PL    0/1:120,31:151:99:190,0,1187
17    44626347    rs62073349    T    C    1151.94    MQFilter40    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.69;DB;DP=150;Dels=0.0;FS=5.261;HRun=0;HaplotypeScore=2.3574;MQ=30.33;MQ0=17;MQRankSum=-0.594;QD=7.68;ReadPosRankSum=0.69;SNPEFF_AMINO_ACID_CHANGE=I1281T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44625678_44627209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333412    GT:AD:DP:GQ:PL    0/1:77,72:150:99:1182,0,1617
17    44626660    rs1969205    C    G    5828.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=235;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5781;MQ=27.89;MQ0=16;QD=24.8;SNPEFF_AMINO_ACID_CHANGE=N1385K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44625678_44627209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333412    GT:AD:DP:GQ:PL    1/1:0,234:235:99:5828,550,0
17    44630893    .    A    G    196.29    MQFilter40    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6492;MQ=31.04;MQ0=7;MQRankSum=1.076;QD=4.56;ReadPosRankSum=0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336125    GT:AD:DP:GQ:PL    0/1:33,9:43:99:226,0,596
17    44632540    rs144051917    T    C    420.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.46;MQ0=53;QD=4.04;SNPEFF_AMINO_ACID_CHANGE=W1628R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44632518_44632572;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333412    GT:AD:DP:GQ:PL    1/1:0,104:104:51.02:453,51,0
17    44632734    .    A    G    759.82    MQFilter40    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.731;DP=183;DS;Dels=0.0;FS=7.258;HRun=0;HaplotypeScore=0.0;MQ=26.31;MQ0=21;MQRankSum=-1.337;QD=4.15;ReadPosRankSum=-0.322;SNPEFF_AMINO_ACID_CHANGE=A1666;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44632651_44632790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333412    GT:AD:DP:GQ:PL    0/1:131,52:183:99:790,0,2635
17    44782224    rs146427930    A    AGT    1275.20    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.606;DB;DP=75;FS=11.24;HRun=0;HaplotypeScore=241.2256;IndelType=I;MQ=41.71;MQ0=2;MQRankSum=1.229;QD=16.56;ReadPosRankSum=-1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225282    GT:AD:DP:GQ:PL    0/1:49,27:75:99:1314,0,1668
17    44782279    rs116988420    C    G    303.78    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=3.888;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=43.09;MQ0=2;MQRankSum=2.023;QD=8.93;ReadPosRankSum=0.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225282    GT:AD:DP:GQ:PL    0/1:23,11:34:99:334,0,591
17    44788253    rs78850923    G    A    657.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225282    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:691,54,0
17    44788310    rs183211    G    A    310.96    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.243;DB;DP=33;Dels=0.0;FS=4.27;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.58;QD=9.42;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225282    GT:AD:DP:GQ:PL    0/1:21,12:33:99:341,0,634
17    44799216    rs199455    C    T    1679.22    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.036;DB;DP=140;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=2.6511;MQ=41.4;MQ0=16;MQRankSum=0.155;QD=11.99;ReadPosRankSum=-0.748;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225282    GT:AD:DP:GQ:PL    0/1:66,74:140:99:1709,0,1500
17    44828931    rs199533    G    A    454.99    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.201;DB;DP=38;Dels=0.0;FS=1.289;HRun=2;HaplotypeScore=1.8628;MQ=58.27;MQ0=0;MQRankSum=-0.804;QD=11.97;ReadPosRankSum=1.359;SNPEFF_AMINO_ACID_CHANGE=K608;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_44828869_44828982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225282    GT:AD:DP:GQ:PL    0/1:18,20:38:99:485,0,547
17    44950237    rs11654422    G    A    47.51    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.727;QD=9.5;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290015    GT:AD:DP:GQ:PL    0/1:1,4:5:33.62:78,0,34
17    44950253    rs11654424    G    A    33.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=8.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290015    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:64,0,34
17    45008570    rs197922    G    A    975.92    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=68;Dels=0.0;FS=3.191;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-1.249;QD=14.35;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=R67K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45008465_45008573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225567    GT:AD:DP:GQ:PL    0/1:33,35:68:99:1006,0,975
17    45012248    rs169126    T    G    333.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225567    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:366,30,0
17    45017859    rs758392    A    G    663.76    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.679;DB;DP=55;Dels=0.0;FS=1.653;HRun=2;HaplotypeScore=0.8941;MQ=58.73;MQ0=0;MQRankSum=0.927;QD=12.07;ReadPosRankSum=1.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415811    GT:AD:DP:GQ:PL    0/1:31,23:55:99:694,0,1007
17    45094541    rs62073765    T    C    453.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.94;MQ0=4;QD=20.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439730    GT:AD:DP:GQ:PL    1/1:0,22:22:45.08:486,45,0
17    45094638    rs4968300    G    T    889.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.27;MQ0=39;QD=11.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439730    GT:AD:DP:GQ:PL    1/1:27,53:80:90.06:923,90,0
17    45094996    .    A    G    1521.29    MQFilter40    AC=2;AF=1.00;AN=2;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=26.98;MQ0=20;QD=20.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439730    GT:AD:DP:GQ:PL    1/1:0,74:75:99:1554,147,0
17    45095015    rs3890957    G    T    2656.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=36.68;MQ0=20;QD=25.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439730    GT:AD:DP:GQ:PL    1/1:13,92:105:99:2690,223,0
17    45096957    rs6504673    G    C    714.61    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.5;DB;DP=107;Dels=0.0;FS=28.174;HRun=0;HaplotypeScore=2.8226;MQ=46.11;MQ0=11;MQRankSum=-5.012;QD=6.68;ReadPosRankSum=0.075;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439730    GT:AD:DP:GQ:PL    0/1:63,44:107:99:745,0,1761
17    45097116    rs11426497    G    GC    789.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=43.7727;IndelType=I;MQ=25.19;MQ0=2;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439730    GT:AD:DP:GQ:PL    1/1:4,20:21:57.19:832,57,0
17    45102165    rs2678687    C    A    401.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=28.02;MQ0=1;QD=26.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GOSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439730    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:435,39,0
17    45110686    rs144657527    G    C    557.51    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=4.207;DB;DP=132;Dels=0.0;FS=4.832;HRun=1;HaplotypeScore=1.997;MQ=35.5;MQ0=18;MQRankSum=0.714;QD=4.22;ReadPosRankSum=-0.136;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:99,33:132:99:588,0,1968
17    45214558    rs77685276    G    A    183.48    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.165;DB;DP=37;Dels=0.0;FS=9.657;HRun=4;HaplotypeScore=0.6651;MQ=50.4;MQ0=1;MQRankSum=-3.392;QD=4.96;ReadPosRankSum=0.823;SNPEFF_AMINO_ACID_CHANGE=R564*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_45214518_45214726;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:23,14:37:99:213,0,730
17    45214631    rs11570544    G    A    196.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.434;DB;DP=34;Dels=0.0;FS=6.761;HRun=0;HaplotypeScore=0.9734;MQ=48.37;MQ0=4;MQRankSum=-2.522;QD=5.77;ReadPosRankSum=-0.899;SNPEFF_AMINO_ACID_CHANGE=Y539;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45214518_45214726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:17,17:34:99:226,0,531
17    45214643    rs138020641    A    T    56.62    QDFilter2    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=30;Dels=0.03;FS=6.662;HRun=0;HaplotypeScore=3.938;MQ=46.91;MQ0=5;MQRankSum=-3.454;QD=1.83;ReadPosRankSum=0.211;SNPEFF_AMINO_ACID_CHANGE=V535;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45214518_45214726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:15,9:30:86.62:87,0,514
17    45214682    rs62075622    A    G    101    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=0.99;DB;DP=33;Dels=0.0;FS=11.977;HRun=0;HaplotypeScore=2.97;MQ=50.16;MQ0=3;MQRankSum=-3.014;QD=3.06;ReadPosRankSum=-0.858;SNPEFF_AMINO_ACID_CHANGE=H522;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45214518_45214726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:20,13:33:99:131,0,637
17    45214690    rs74390782    G    A    71.81    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=2.263;DB;DP=35;Dels=0.0;FS=12.602;HRun=0;HaplotypeScore=4.9418;MQ=50.77;MQ0=3;MQRankSum=-2.808;QD=2.05;ReadPosRankSum=-1.509;SNPEFF_AMINO_ACID_CHANGE=R520W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45214518_45214726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:23,12:35:99:102,0,678
17    45234303    .    G    C    249.18    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.882;DP=30;Dels=0.0;FS=12.674;HRun=1;HaplotypeScore=4.9581;MQ=48.27;MQ0=1;MQRankSum=-2.9;QD=8.31;ReadPosRankSum=-0.863;SNPEFF_AMINO_ACID_CHANGE=A212G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45234279_45234490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:17,13:30:99:279,0,547
17    45234406    rs112848754    CA    C    347.40    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=4.671;DB;DP=39;FS=1.372;HRun=1;HaplotypeScore=216.6112;IndelType=D;MQ=44.27;MQ0=4;MQRankSum=-3.758;QD=6.09;ReadPosRankSum=1.476;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_45234279_45234490;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000066544    GT:AD:DP:GQ:PL    0/1:30,27:39:99:386,0,1179
17    45234417    rs193061947    A    G    188.53    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=58;Dels=0.0;FS=3.035;HRun=0;HaplotypeScore=6.8668;MQ=44.25;MQ0=4;MQRankSum=-5.785;QD=3.25;ReadPosRankSum=0.074;SNPEFF_AMINO_ACID_CHANGE=I174T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45234279_45234490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:33,25:58:99:219,0,873
17    45234420    rs78493795    T    G    188.53    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.687;DB;DP=55;Dels=0.0;FS=3.035;HRun=0;HaplotypeScore=7.8802;MQ=45.3;MQ0=4;MQRankSum=-5.95;QD=3.43;ReadPosRankSum=1.242;SNPEFF_AMINO_ACID_CHANGE=Y173S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45234279_45234490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:28,27:55:99:219,0,852
17    45234449    rs112216339    G    A    160.86    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=56;Dels=0.0;FS=1.36;HRun=1;HaplotypeScore=0.8667;MQ=44.93;MQ0=3;MQRankSum=-5.37;QD=2.87;ReadPosRankSum=-0.695;SNPEFF_AMINO_ACID_CHANGE=Y163;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45234279_45234490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446365    GT:AD:DP:GQ:PL    0/1:33,23:56:99:191,0,896
17    45291103    rs72405789    TG    T    1755.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=6;HaplotypeScore=148.8282;IndelType=D;MQ=62.02;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354968    GT:AD:DP:GQ:PL    1/1:1,57:58:99:1798,168,0
17    45300218    rs4968309    C    T    560.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536623    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:593,45,0
17    45380002    rs3760372    T    C    553.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262017    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:587,45,0
17    45385012    rs3809863    C    T    1001.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262017    GT:AD:DP:GQ:PL    1/1:0,31:31:75.23:1034,75,0
17    45422628    rs7214410    A    G    174.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435993    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
17    45425115    rs7206971    G    A    497.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.68;MQ0=0;QD=24.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435993    GT:AD:DP:GQ:PL    1/1:0,20:20:45.13:530,45,0
17    45425144    rs3851808    C    T    845    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.36;MQ0=0;QD=33.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435993    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:878,66,0
17    45438886    rs10538163    CAGTG    C    2810.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.0;HRun=0;HaplotypeScore=314.1468;IndelType=D;MQ=56.7;MQ0=1;QD=52.04;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_45438744_45438887;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000331493    GT:AD:DP:GQ:PL    1/1:2,52:53:99:2852,154,0
17    45438952    rs6504872    C    T    840.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331493    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:873,66,0
17    45451894    rs4968318    G    A    2543.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.62;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=V216I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45451838_45452332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000517484    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2577,190,0
17    45479446    rs12452315    A    C    793.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331493    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:826,60,0
17    45479706    rs11079774    C    G    89.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331493    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
17    45501967    rs3826536    T    A    2723.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=36.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331493    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2757,202,0
17    45502096    rs9908049    G    C    1305.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.52;MQ0=0;QD=35.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331493    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1338,102,0
17    45503121    rs140804767    T    C    618.40    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.824;DB;DP=41;Dels=0.0;FS=4.533;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.771;QD=15.08;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331493    GT:AD:DP:GQ:PL    0/1:19,22:41:99:648,0,596
17    45503257    rs1912487    C    T    630.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.48;MQ0=0;QD=37.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331493    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:664,51,0
17    45560564    rs147082605    CT    C    279.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.542;DB;DP=22;FS=0.0;HRun=14;HaplotypeScore=67.4618;IndelType=D;MQ=43.6;MQ0=0;MQRankSum=1.542;QD=12.71;ReadPosRankSum=0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC040934.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425159    GT:AD:DP:GQ:PL    1/1:5,17:22:25.71:322,26,0
17    45567593    rs148301784    ATC    A    3711.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.0;HRun=0;HaplotypeScore=368.4677;IndelType=D;MQ=47.03;MQ0=2;QD=38.27;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_45567532_45567661;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC040934.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000425159    GT:AD:DP:GQ:PL    1/1:5,92:95:99:3712,268,0
17    45569815    rs2610367    A    G    607.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=41.48;MQ0=1;QD=31.95;SNPEFF_AMINO_ACID_CHANGE=L4P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45569760_45569849;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC040934.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425159    GT:AD:DP:GQ:PL    1/1:0,19:19:54.15:640,54,0
17    45623409    .    G    GGTGT    1031.90    PASS    AC=2;AF=1.00;AN=2;DP=53;FS=0.0;HRun=0;HaplotypeScore=272.8535;IndelType=I;MQ=35.14;MQ0=0;QD=19.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPEPPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322157    GT:AD:DP:GQ:PL    1/1:37,12:53:53.39:1074,53,0
17    45668339    rs2610294    T    G    160.06    MQFilter40;QDFilter2    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=5.208;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=32.09;MQ0=33;MQRankSum=-6.663;QD=1.55;ReadPosRankSum=1.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPEPPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525401    GT:AD:DP:GQ:PL    0/1:48,55:103:99:190,0,1585
17    45669115    .    G    A    76.67    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.08;MQ0=0;MQRankSum=-1.307;QD=8.52;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPEPPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322157    GT:AD:DP:GQ:PL    0/1:5,4:9:99:107,0,149
17    45669359    .    T    G    246.40    QDFilter2    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DP=192;DS;Dels=0.0;FS=6.073;HRun=0;HaplotypeScore=0.9665;MQ=47.07;MQ0=9;MQRankSum=-3.154;QD=1.28;ReadPosRankSum=0.414;SNPEFF_AMINO_ACID_CHANGE=F116C;SNPEFF_CODON_CHANGE=tTt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45669322_45669426;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPEPPS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527964    GT:AD:DP:GQ:PL    0/1:167,25:192:99:276,0,4871
17    45691151    rs79336981    A    T    568.54    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.837;DB;DP=45;Dels=0.0;FS=1.786;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.45;QD=12.63;ReadPosRankSum=-0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=NPEPPS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322157    GT:AD:DP:GQ:PL    0/1:20,25:45:99:599,0,680
17    45742233    rs56226803    T    A    120.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290158    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
17    45750596    rs3809868    G    A    416.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=31;Dels=0.0;FS=1.862;HRun=0;HaplotypeScore=1.7675;MQ=60.0;MQ0=0;MQRankSum=1.037;QD=13.43;ReadPosRankSum=0.871;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290158    GT:AD:DP:GQ:PL    0/1:15,15:31:99:446,0,424
17    45752310    rs7213086    C    G    40.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290158    GT:AD:DP:GQ:PL    0/1:3,2:5:70.60:71,0,104
17    45754569    rs11345017    AC    A    420.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=40.9174;IndelType=D;MQ=61.06;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290158    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:463,36,0
17    45755810    rs4239162    G    A    167.87    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.468;QD=11.19;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290158    GT:AD:DP:GQ:PL    0/1:6,8:15:99:198,0,190
17    45759767    rs7223246    C    T    321.50    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.502;DB;DP=30;Dels=0.0;FS=1.449;HRun=4;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.199;QD=10.72;ReadPosRankSum=0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290158    GT:AD:DP:GQ:PL    0/1:17,13:30:99:351,0,584
17    45774072    rs8078309    T    C    734.21    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.151;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=57.77;MQ0=0;MQRankSum=1.283;QD=17.48;ReadPosRankSum=0.992;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361722    GT:AD:DP:GQ:PL    0/1:17,25:42:99:764,0,346
17    45820707    rs11657388    C    G    192.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=21.43;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177694    GT:AD:DP:GQ:PL    0/1:3,6:9:82.82:223,0,83
17    45822092    rs11650354    C    T    1714.08    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.086;DB;DP=128;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9999;MQ=59.67;MQ0=0;MQRankSum=1.03;QD=13.39;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000177694    GT:AD:DP:GQ:PL    0/1:67,61:128:99:1744,0,2087
17    45885687    rs9907142    A    G    898.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_AMINO_ACID_CHANGE=Y833;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45884733_45885765;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000007414    GT:AD:DP:GQ:PL    1/1:0,31:31:75.21:932,75,0
17    45888251    rs2074188    C    G    203.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007414    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
17    45894735    rs9914156    A    G    147.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007414    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:181,15,0
17    45896472    rs188653032    G    A    367.15    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.279;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.403;QD=15.96;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290208    GT:AD:DP:GQ:PL    0/1:10,13:23:99:397,0,314
17    45896478    rs878171    T    C    737.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290208    GT:AD:DP:GQ:PL    1/1:0,24:24:63.17:771,63,0
17    45897531    rs1985407    C    A    528.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290208    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:562,42,0
17    45901480    rs701984    C    T    743.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423147    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:777,60,0
17    45904163    rs3809869    A    G    810.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423147    GT:AD:DP:GQ:PL    1/1:1,31:32:75.20:843,75,0
17    45905850    rs4793671    C    T    596.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290208    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:630,48,0
17    45915788    rs7350974    T    C    2309.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9472;MQ=59.38;MQ0=0;QD=30.79;SNPEFF_AMINO_ACID_CHANGE=M323V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45915636_45915816;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCRN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290216    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2342,184,0
17    45916725    rs2074191    T    C    278.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269025    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:312,24,0
17    45992580    rs112031239    C    CA    932.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.163;DB;DP=49;FS=0.0;HRun=13;HaplotypeScore=209.7077;IndelType=I;MQ=58.46;MQ0=0;MQRankSum=0.993;QD=19.02;ReadPosRankSum=-1.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322172    GT:AD:DP:GQ:PL    1/1:11,37:49:32.24:974,32,0
17    45994044    rs2228253    C    T    1502.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.64;SNPEFF_AMINO_ACID_CHANGE=L196;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45993522_45994136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322172    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1535,117,0
17    45994094    rs2228251    T    C    2012.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.021;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.61;MQ0=0;MQRankSum=-0.234;QD=34.11;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=L212;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45993522_45994136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322172    GT:AD:DP:GQ:PL    1/1:2,57:59:82.53:2045,83,0
17    45994154    rs2229358    G    A    2916.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.249;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.76;MQ0=0;MQRankSum=0.616;QD=30.38;ReadPosRankSum=0.039;SNPEFF_AMINO_ACID_CHANGE=P239;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_45993522_45994496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376741    GT:AD:DP:GQ:PL    1/1:4,92:96:99:2949,178,0
17    46002744    rs1130932    G    T    2661.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=V526;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46002714_46002907;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376741    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2695,208,0
17    46022889    rs2002136    C    T    1266.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.45;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225573    GT:AD:DP:GQ:PL    1/1:0,41:42:99:1300,99,0
17    46024254    rs117508783    A    T    202.35    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=20.23;ReadPosRankSum=0.546;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225573    GT:AD:DP:GQ:PL    0/1:3,7:10:24.31:232,0,24
17    46030753    rs148774128    G    T    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225573    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:71,0,34
17    46048592    rs2905846    A    G    81.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338399    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
17    46048858    rs2525085    C    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338399    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    46052793    rs2597172    A    G    333.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338399    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:366,30,0
17    46054264    rs2525087    C    A    282.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338399    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:315,24,0
17    46055106    rs2597173    C    T    369.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338399    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:402,30,0
17    46055347    rs2875746    A    G    366.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338399    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:400,33,0
17    46059071    rs2737    T    C    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK5RAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338399    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    46134635    .    G    A    679.16    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DP=46;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=1.2434;MQ=59.09;MQ0=0;MQRankSum=0.935;QD=14.76;ReadPosRankSum=0.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357480    GT:AD:DP:GQ:PL    0/1:24,22:46:99:709,0,770
17    46134798    rs2229368    C    T    1018.57    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=4.032;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.7;MQ0=0;MQRankSum=-1.33;QD=13.4;ReadPosRankSum=0.216;SNPEFF_AMINO_ACID_CHANGE=T146;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46134706_46134864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536222    GT:AD:DP:GQ:PL    0/1:39,37:76:99:1049,0,1103
17    46136256    .    T    G    322.08    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=0.7;DP=37;Dels=0.0;FS=1.391;HRun=2;HaplotypeScore=0.8667;MQ=58.74;MQ0=0;MQRankSum=-0.973;QD=8.7;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=V368;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46135657_46137015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFE2L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536222    GT:AD:DP:GQ:PL    0/1:24,13:37:99:352,0,772
17    46190819    rs8080662    G    A    1326.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359238    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1360,99,0
17    46198876    rs3744346    G    C    2167.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.87;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359238    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2200,184,0
17    46214736    rs74885375    T    C    592    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336915    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:625,54,0
17    46239985    rs208005    A    G    495.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336915    GT:AD:DP:GQ:PL    1/1:0,14:15:39.12:529,39,0
17    46441132    rs77455117    G    A    837.89    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=3.252;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.93;QD=11.48;ReadPosRankSum=0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336915    GT:AD:DP:GQ:PL    0/1:44,29:73:99:868,0,1225
17    46474289    rs148098474    TA    T    59.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=12;FS=0.0;HRun=13;HaplotypeScore=42.0536;IndelType=D;MQ=61.78;MQ0=0;MQRankSum=1.031;QD=4.95;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336915    GT:AD:DP:GQ:PL    0/1:5,6:12:97.15:98,0,97
17    46607021    rs7226137    T    C    3111.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_AMINO_ACID_CHANGE=E265G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46606550_46607237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239174    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3145,247,0
17    46620288    rs1042815    G    A    187.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HOXB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326226    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:220,18,0
17    46622335    rs111979968    A    AC    561.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=6;HaplotypeScore=108.6345;IndelType=I;MQ=59.93;MQ0=0;QD=28.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311626    GT:AD:DP:GQ:PL    1/1:4,16:20:48.15:604,48,0
17    46622349    rs9899351    C    A    208.88    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.92;MQ0=0;MQRankSum=-0.146;QD=12.29;ReadPosRankSum=-2.001;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_46621883_46623441;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=HOXB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330070    GT:AD:DP:GQ:PL    0/1:7,10:17:99:239,0,142
17    46629232    rs890432    G    A    945.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0686;MQ=58.45;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465120    GT:AD:DP:GQ:PL    1/1:0,29:30:78.22:979,78,0
17    46629593    rs2229304    G    T    1362.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.96;SNPEFF_AMINO_ACID_CHANGE=P82T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46629389_46629994;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311626    GT:AD:DP:GQ:PL    1/1:2,41:44:99:1395,111,0
17    46654512    rs3833171    GC    G    168.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=13.417;IndelType=D;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460160    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
17    46670422    rs2288276    G    C    309.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225648    GT:AD:DP:GQ:PL    1/1:0,13:13:27.09:342,27,0
17    46670520    rs7406798    T    C    1022.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_AMINO_ACID_CHANGE=Q175;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46670483_46671323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000239151    GT:AD:DP:GQ:PL    1/1:0,32:32:78.25:1055,78,0
17    46673723    rs12949148    T    G    170.18    PASS    AB=0.014;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.43;MQ0=0;MQRankSum=0.678;QD=2.33;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490419    GT:AD:DP:GQ:PL    0/1:1,72:73:11.26:200,0,11
17    46673724    rs12940530    C    T    231.36    PASS    AB=0.014;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.42;MQ0=0;MQRankSum=1.431;QD=3.21;ReadPosRankSum=-1.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490419    GT:AD:DP:GQ:PL    0/1:1,70:72:7.32:261,0,7
17    46683837    rs9903182    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239165    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    46688256    rs7406910    T    C    1460.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=32.46;SNPEFF_AMINO_ACID_CHANGE=T9A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46687881_46688379;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000239165    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1494,114,0
17    46700352    rs150997786    G    A    1343.72    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.878;DB;DP=91;Dels=0.0;FS=13.828;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.83;QD=14.77;ReadPosRankSum=0.774;SNPEFF_AMINO_ACID_CHANGE=L221;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46698518_46700497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311177    GT:AD:DP:GQ:PL    0/1:47,44:91:99:1374,0,1369
17    46703069    rs192619342    C    G    536.36    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.528;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=59.41;MQ0=0;MQRankSum=-1.186;QD=13.75;ReadPosRankSum=-0.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494244    GT:AD:DP:GQ:PL    0/1:14,25:39:99:566,0,438
17    46709835    rs718079    A    G    236.24    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.168;DB;DP=21;Dels=0.0;FS=7.346;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.391;QD=11.25;ReadPosRankSum=0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOXB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494244    GT:AD:DP:GQ:PL    0/1:12,9:21:99:266,0,389
17    46862711    rs508696    T    C    70.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424018    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:102,9,0
17    46879079    rs12947660    G    T    497.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418322    GT:AD:DP:GQ:PL    1/1:0,17:17:42.11:531,42,0
17    46879194    rs1715231    T    C    74.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418322    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
17    46881748    rs489005    T    C    1141.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.25;MQ0=0;QD=30.84;SNPEFF_AMINO_ACID_CHANGE=Q156R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_46881657_46881885;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418322    GT:AD:DP:GQ:PL    1/1:0,37:37:96.26:1174,96,0
17    46926772    rs551605    A    G    2587.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;QD=35.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALCOCO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503463    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2620,193,0
17    46970836    rs684682    A    G    654.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355938    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:687,54,0
17    46972479    rs3080082    ATCTC    A    1088.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=108.9794;IndelType=D;MQ=51.25;MQ0=0;QD=54.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514759    GT:AD:DP:GQ:PL    1/1:0,20:20:60.21:1130,60,0
17    46972865    rs832410    C    T    1767.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504591    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1800,144,0
17    46973139    rs113694237    TG    T    3856.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;FS=0.0;HRun=7;HaplotypeScore=368.6556;IndelType=D;MQ=59.83;MQ0=0;QD=28.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504591    GT:AD:DP:GQ:PL    1/1:15,122:137:99:3856,379,0
17    46993233    rs3744608    C    G    107.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=13.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360943    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:140,12,0
17    46993370    rs4378658    G    A    2225.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.55;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360943    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2258,175,0
17    46993620    .    G    GTTTTTTTTT    2036.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=59;FS=0.0;HRun=15;HaplotypeScore=817.3111;IndelType=I;MQ=38.02;MQ0=1;MQRankSum=-1.634;QD=33.39;ReadPosRankSum=-1.535;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511373    GT:AD:DP:GQ:PL    1/1:48,11:59:32.52:2079,33,0
17    46993667    rs4597361    T    G    126.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.04;MQ0=1;QD=10.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511373    GT:AD:DP:GQ:PL    1/1:0,12:12:15.03:159,15,0
17    46998902    rs58838744    A    G    91.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360943    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
17    47000110    rs2088139    C    T    115.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Z;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360943    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
17    47000251    rs1058018    C    T    1009.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.95;MQ0=0;QD=31.53;SNPEFF_AMINO_ACID_CHANGE=Y215;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_47000209_47000299;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2Z;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405215    GT:AD:DP:GQ:PL    1/1:0,32:32:75.25:1042,75,0
17    47008757    rs56046215    A    T    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506104    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    47010795    rs142029486    CAG    C    1833.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=154.4278;IndelType=D;MQ=60.2;MQ0=0;QD=44.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506104    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1876,123,0
17    47013382    .    G    GTTTGT    358.19    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=16.6678;IndelType=I;MQ=57.52;MQ0=0;QD=71.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506104    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:400,15,0
17    47013717    rs3215074    AT    A    122.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=9;HaplotypeScore=18.9825;IndelType=D;MQ=57.28;MQ0=0;QD=17.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510195    GT:AD:DP:GQ:PL    1/1:1,6:7:18.01:165,18,0
17    47014127    rs1994970    T    C    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=22.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510195    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
17    47014675    rs2132201    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
17    47018025    rs8182364    A    G    70.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290330    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:102,9,0
17    47021418    rs12603612    A    C    394.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290330    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:427,33,0
17    47021428    rs2411375    C    G    368.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290330    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
17    47038391    rs6504587    T    C    150.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357424    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:183,15,0
17    47039132    rs2291725    T    C    470.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.933;MQ=58.95;MQ0=0;QD=21.37;SNPEFF_AMINO_ACID_CHANGE=S103G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_47039089_47039181;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357424    GT:AD:DP:GQ:PL    1/1:0,22:22:42.09:503,42,0
17    47042117    rs4794006    G    A    86.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357424    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
17    47044463    rs62078384    C    T    1048.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357424    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1082,84,0
17    47076551    rs2411760    G    T    517.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=58.89;MQ0=0;QD=24.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290341    GT:AD:DP:GQ:PL    1/1:1,20:21:45.13:551,45,0
17    47076557    rs1948513    G    C    274.24    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.361;DB;DP=20;Dels=0.0;FS=9.336;HRun=0;HaplotypeScore=1.7256;MQ=58.84;MQ0=0;MQRankSum=0.417;QD=13.71;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290341    GT:AD:DP:GQ:PL    0/1:6,14:20:99:304,0,137
17    47120776    rs2289636    T    C    404.01    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.759;DB;DP=41;Dels=0.0;FS=4.773;HRun=1;HaplotypeScore=1.9966;MQ=58.87;MQ0=0;MQRankSum=-0.483;QD=9.85;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505562    GT:AD:DP:GQ:PL    0/1:24,17:41:99:434,0,805
17    47123423    rs4643373    T    C    390.52    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=33;Dels=0.0;FS=5.287;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.306;QD=11.83;ReadPosRankSum=0.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGF2BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290341    GT:AD:DP:GQ:PL    0/1:16,17:33:99:421,0,476
17    47210429    rs7207842    A    G    83.24    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=58.2;MQ0=0;MQRankSum=-0.54;QD=6.4;ReadPosRankSum=1.466;SNPEFF_AMINO_ACID_CHANGE=E14;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_47210329_47210581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300404    GT:AD:DP:GQ:PL    0/1:9,4:13:99:113,0,281
17    47234117    rs2293217    T    G    284.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300404    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:318,24,0
17    47236696    .    G    GTTTGT    444.89    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.816;DP=30;FS=0.0;HRun=0;HaplotypeScore=135.3836;IndelType=I;MQ=60.32;MQ0=0;MQRankSum=0.733;QD=14.83;ReadPosRankSum=1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300404    GT:AD:DP:GQ:PL    0/1:22,8:30:99:484,0,604
17    47237802    rs1523137    A    G    1438.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300404    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1471,111,0
17    47238028    rs8071836    C    T    3028.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300404    GT:AD:DP:GQ:PL    1/1:0,83:83:99:3061,226,0
17    47241604    rs8074457    T    C    4343.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=N281;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_47241450_47241637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALNT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504681    GT:AD:DP:GQ:PL    1/1:0,125:125:99:4344,325,0
17    47284683    rs2293215    C    T    1343.46    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=1.437;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9831;MQ=59.79;MQ0=0;MQRankSum=-0.72;QD=12.21;ReadPosRankSum=0.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300406    GT:AD:DP:GQ:PL    0/1:61,49:110:99:1373,0,1820
17    47295008    rs117745330    C    A    146.50    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.766;QD=9.77;ReadPosRankSum=-2.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225941    GT:AD:DP:GQ:PL    0/1:6,9:15:99:176,0,212
17    47295356    .    T    TCTC    659.13    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DP=24;FS=0.0;HRun=0;HaplotypeScore=76.0945;IndelType=I;MQ=56.04;MQ0=0;MQRankSum=-1.725;QD=27.46;ReadPosRankSum=1.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225941    GT:AD:DP:GQ:PL    0/1:13,11:24:99:698,0,433
17    47300081    rs2233374    C    G    35.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHOSPHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310544    GT:AD:DP:GQ:PL    0/1:2,2:5:65.07:65,0,71
17    47329705    rs596783    T    C    421.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.019;DB;DP=32;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=0.8667;MQ=59.42;MQ0=0;MQRankSum=-0.396;QD=13.18;ReadPosRankSum=-0.396;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP1-62O9.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322227    GT:AD:DP:GQ:PL    0/1:16,16:32:99:452,0,531
17    47389935    rs6504604    G    T    153.16    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.53;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF652;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362063    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:183,0,25
17    47390014    rs2072153    G    C    263.98    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.775;DB;DP=24;Dels=0.0;FS=9.394;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=11.0;ReadPosRankSum=-0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF652;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362063    GT:AD:DP:GQ:PL    0/1:15,9:24:99:294,0,446
17    47484003    rs2233669    T    C    80.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393345    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
17    47486684    rs2277637    T    C    415.17    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=30;Dels=0.0;FS=11.982;HRun=0;HaplotypeScore=0.8941;MQ=58.45;MQ0=0;MQRankSum=0.062;QD=13.84;ReadPosRankSum=0.852;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434917    GT:AD:DP:GQ:PL    0/1:16,14:30:99:445,0,521
17    47490726    rs2233663    C    T    112.98    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.6;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300408    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:143,0,26
17    47579417    rs4794056    C    T    322.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=20;Dels=0.0;FS=2.304;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.619;QD=16.13;ReadPosRankSum=-1.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000172229    GT:AD:DP:GQ:PL    0/1:8,12:20:99:353,0,268
17    47699153    rs1981705    T    C    36.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPOP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451526    GT:AD:DP:GQ:PL    0/1:2,2:4:66.74:67,0,71
17    47780710    rs34775670    GCA    G    261.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=65.4764;IndelType=D;MQ=59.13;MQ0=0;QD=18.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435059    GT:AD:DP:GQ:PL    1/1:4,7:14:29.75:304,30,0
17    47781677    rs2289600    T    C    148.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=14.83;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505765    GT:AD:DP:GQ:PL    0/1:4,6:10:99:178,0,122
17    47783663    rs1135034    C    T    288.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=22;Dels=0.04;FS=1.971;HRun=0;HaplotypeScore=1.8824;MQ=47.75;MQ0=0;MQRankSum=0.317;QD=12.53;ReadPosRankSum=-0.458;SNPEFF_AMINO_ACID_CHANGE=V102I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_47783566_47783671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376622    GT:AD:DP:GQ:PL    0/1:11,11:22:99:318,0,293
17    47785064    rs9908959    C    A    279.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM117A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240364    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:313,24,0
17    47874428    .    CT    C    38.17    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DP=17;FS=0.0;HRun=15;HaplotypeScore=97.2333;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=0.248;QD=2.25;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259021    GT:AD:DP:GQ:PL    0/1:11,5:17:32.34:77,0,32
17    47888852    rs4462645    A    G    1006.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5115;MQ=59.23;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=R100;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_47888838_47888936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KAT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503935    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1039,75,0
17    47924267    rs56186849    G    C    232.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=8.61;ReadPosRankSum=1.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326219    GT:AD:DP:GQ:PL    0/1:18,9:27:99:262,0,637
17    48046626    rs71352544    T    TG    146.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=6;HaplotypeScore=22.2207;IndelType=I;MQ=56.04;MQ0=0;QD=24.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DLX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503410    GT:AD:DP:GQ:PL    1/1:0,5:6:15.05:189,15,0
17    48046775    rs58769681    G    A    786.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.29;MQ0=0;QD=30.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DLX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503410    GT:AD:DP:GQ:PL    1/1:0,25:26:63.18:820,63,0
17    48148413    rs2301628    G    A    287.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1253;MQ=58.71;MQ0=0;MQRankSum=1.588;QD=16.0;ReadPosRankSum=-0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ITGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007722    GT:AD:DP:GQ:PL    0/1:9,9:18:99:318,0,273
17    48151849    rs61730081    G    A    314.04    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.8;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.716;QD=10.47;ReadPosRankSum=-1.339;SNPEFF_AMINO_ACID_CHANGE=V249M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48151812_48151898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ITGA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544892    GT:AD:DP:GQ:PL    0/1:17,13:30:99:344,0,535
17    48151908    rs4793639    T    C    675.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ITGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505552    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:709,51,0
17    48155275    rs11868159    A    T    246.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ITGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505552    GT:AD:DP:GQ:PL    1/1:0,9:9:27.02:280,27,0
17    48155771    rs16948648    C    T    112.89    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=18.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ITGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505552    GT:AD:DP:GQ:PL    0/1:1,5:6:19.31:143,0,19
17    48165064    rs12951197    T    C    982.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ITGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007722    GT:AD:DP:GQ:PL    1/1:0,36:36:75.24:1015,75,0
17    48165370    rs2269771    A    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ITGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007722    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    48172779    rs7221362    A    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ITGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007722    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
17    48174908    rs3178055    C    T    1324.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.78;SNPEFF_AMINO_ACID_CHANGE=S16;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48174787_48174928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000007708    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1357,99,0
17    48184288    rs847694    G    A    886.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505897    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:919,69,0
17    48184377    rs847693    A    G    1100.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=35.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505897    GT:AD:DP:GQ:PL    1/1:0,31:31:87.26:1134,87,0
17    48186131    rs5820801    T    TCTC    262.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=12.1176;IndelType=I;MQ=57.52;MQ0=0;QD=52.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503076    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:305,15,0
17    48186817    rs56409353    C    G    319.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503076    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:352,27,0
17    48187470    rs60269840    G    A    388.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503076    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:422,33,0
17    48187546    rs61328000    G    C    81.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503076    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
17    48191818    rs77267183    A    C    735.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007708    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:768,60,0
17    48202118    rs55670935    C    T    274.40    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.033;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=50.89;MQ0=0;MQRankSum=0.363;QD=12.47;ReadPosRankSum=-0.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511964    GT:AD:DP:GQ:PL    0/1:12,10:22:99:304,0,345
17    48202135    rs71353620    G    GCACACA    655.79    PASS    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=317.3631;IndelType=I;MQ=45.3;MQ0=0;MQRankSum=-0.825;QD=25.22;ReadPosRankSum=-1.768;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511964    GT:AD:DP:GQ:PL    0/1:18,5:26:50.56:695,0,51
17    48212647    rs77064744    GA    G    3489.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.0;HRun=2;HaplotypeScore=291.2586;IndelType=D;MQ=60.09;MQ0=0;QD=38.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=PPP1R9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513579    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3489,271,0
17    48212910    rs3744535    A    G    522.49    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.398;DB;DP=38;Dels=0.0;FS=4.993;HRun=2;HaplotypeScore=1.7256;MQ=59.39;MQ0=0;MQRankSum=-1.353;QD=13.75;ReadPosRankSum=-1.703;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=PPP1R9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513579    GT:AD:DP:GQ:PL    0/1:16,22:38:99:552,0,479
17    48216944    rs1569116    C    T    953.09    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.592;DB;DP=63;Dels=0.0;FS=8.121;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.419;QD=15.13;ReadPosRankSum=0.213;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC002401.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451776    GT:AD:DP:GQ:PL    0/1:32,31:63:99:983,0,973
17    48216972    rs77141149    G    C    624.30    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.584;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=13.28;ReadPosRankSum=1.166;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC002401.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451776    GT:AD:DP:GQ:PL    0/1:21,26:47:99:654,0,679
17    48243461    rs79410682    G    A    481.75    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=2.029;DB;DP=43;Dels=0.0;FS=4.591;HRun=0;HaplotypeScore=3.9919;MQ=59.46;MQ0=0;MQRankSum=0.085;QD=11.2;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262018    GT:AD:DP:GQ:PL    0/1:21,22:43:99:512,0,631
17    48243504    rs9911548    C    T    1013.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5616;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262018    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1046,78,0
17    48245180    rs2696297    C    T    395.95    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=27;Dels=0.0;FS=11.237;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.439;QD=14.66;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262018    GT:AD:DP:GQ:PL    0/1:12,15:27:99:426,0,394
17    48245269    rs59944537    C    A    1041.35    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.108;DB;DP=92;Dels=0.0;FS=1.945;HRun=0;HaplotypeScore=2.821;MQ=59.5;MQ0=0;MQRankSum=-1.304;QD=11.32;ReadPosRankSum=0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262018    GT:AD:DP:GQ:PL    0/1:50,42:92:99:1071,0,1491
17    48245547    rs11868160    A    G    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262018    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
17    48247689    rs1801191    C    T    475.36    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.86;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.887;QD=10.8;ReadPosRankSum=-0.992;SNPEFF_AMINO_ACID_CHANGE=V311;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48247504_48247712;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGCA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262018    GT:AD:DP:GQ:PL    0/1:25,19:44:99:505,0,732
17    48248906    rs1046329    C    G    530.97    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.787;DB;DP=41;Dels=0.0;FS=1.264;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;MQRankSum=-1.448;QD=12.95;ReadPosRankSum=-0.404;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451235    GT:AD:DP:GQ:PL    0/1:21,20:41:99:561,0,613
17    48252804    rs2696288    T    C    185.43    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=20.6;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SGCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511303    GT:AD:DP:GQ:PL    0/1:2,7:9:60.33:215,0,60
17    48262775    rs1061237    A    G    471.73    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=3.002;DB;DP=23;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.13;QD=20.51;ReadPosRankSum=-0.549;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486572    GT:AD:DP:GQ:PL    0/1:8,15:23:99:502,0,238
17    48264717    rs2696245    C    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476387    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    48265426    rs2586488    A    G    339.19    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.212;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.318;QD=19.95;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476387    GT:AD:DP:GQ:PL    0/1:5,12:17:99:369,0,156
17    48265495    rs1800215    T    C    57.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.54;SNPEFF_AMINO_ACID_CHANGE=T1075A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48265457_48265510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225964    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:90,9,0
17    48266669    rs2586489    G    C    665.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463440    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:698,51,0
17    48267291    rs2075559    G    C    210.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=55.21;MQ0=0;MQRankSum=0.278;QD=14.04;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463440    GT:AD:DP:GQ:PL    0/1:6,9:15:99:241,0,123
17    48268223    rs2734272    A    G    929.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=T766;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48268178_48268285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225964    GT:AD:DP:GQ:PL    1/1:0,31:31:72.23:963,72,0
17    48268626    rs2696246    A    G    165.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463440    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
17    48269302    rs2857396    G    A    140.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.851;QD=14.02;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463440    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,165
17    48269426    rs2586490    C    T    136.61    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=17.08;ReadPosRankSum=-0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463440    GT:AD:DP:GQ:PL    0/1:1,7:8:18.93:167,0,19
17    48271433    rs1007086    A    G    441.15    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=41;Dels=0.0;FS=2.87;HRun=2;HaplotypeScore=1.9454;MQ=60.0;MQ0=0;MQRankSum=-1.497;QD=10.76;ReadPosRankSum=-1.321;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485870    GT:AD:DP:GQ:PL    0/1:24,17:41:99:471,0,648
17    48273155    rs2586494    A    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474644    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
17    48273439    rs2734281    T    C    422.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474644    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:456,36,0
17    48273464    rs2141279    T    C    481.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474644    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:515,39,0
17    48274291    rs2075555    T    G    683.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.88;MQ0=0;QD=34.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474644    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:716,54,0
17    48274309    rs2075554    T    C    785.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.56;MQ0=0;QD=29.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474644    GT:AD:DP:GQ:PL    1/1:0,27:27:60.20:818,60,0
17    48276971    rs2256835    G    C    635.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225964    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:669,51,0
17    48277059    rs150854949    AGCCCCAGGCCCCAGGCCCCAG    A    2543.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=748.2166;IndelType=D;MQ=54.46;MQ0=0;QD=68.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL1A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225964    GT:AD:DP:GQ:PL    1/1:3,34:37:99:2586,102,0
17    48356260    rs6504642    G    C    843.66    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.052;DB;DP=54;Dels=0.0;FS=2.47;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.399;QD=15.62;ReadPosRankSum=0.347;SNPEFF_AMINO_ACID_CHANGE=S90T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48356162_48356357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM92;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300433    GT:AD:DP:GQ:PL    0/1:25,29:54:99:874,0,762
17    48431197    rs739989    C    T    57.17    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-1.159;QD=6.35;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=P114;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48430991_48431483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000017003    GT:AD:DP:GQ:PL    0/1:5,4:9:87.16:87,0,176
17    48431214    rs145954495    G    A    92.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=17;Dels=0.0;FS=14.472;HRun=0;HaplotypeScore=0.7887;MQ=55.8;MQ0=0;MQRankSum=-0.271;QD=5.44;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=R120H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48430991_48431483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000017003    GT:AD:DP:GQ:PL    0/1:10,6:17:99:123,0,272
17    48431777    .    A    G    296.79    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DP=17;Dels=0.0;FS=4.708;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.049;QD=17.46;ReadPosRankSum=-0.83;SNPEFF_AMINO_ACID_CHANGE=S213G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48431769_48431944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000017003    GT:AD:DP:GQ:PL    0/1:7,10:17:99:327,0,225
17    48432042    rs11430429    G    GA    518.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=45.7213;IndelType=I;MQ=61.64;MQ0=0;QD=39.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509778    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:561,36,0
17    48432324    rs12451299    G    C    715.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=52;Dels=0.0;FS=1.128;HRun=0;HaplotypeScore=0.734;MQ=59.19;MQ0=0;MQRankSum=0.046;QD=13.76;ReadPosRankSum=0.284;SNPEFF_AMINO_ACID_CHANGE=R305T;SNPEFF_CODON_CHANGE=aGg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48432215_48432417;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000017003    GT:AD:DP:GQ:PL    0/1:26,26:52:99:745,0,797
17    48433081    rs886568    G    A    272.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509778    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:306,24,0
17    48433958    rs4794136    T    C    1185.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.524;DB;DP=45;Dels=0.0;FS=3.233;HRun=0;HaplotypeScore=1.5781;MQ=56.31;MQ0=0;MQRankSum=-1.249;QD=26.35;ReadPosRankSum=-0.201;SNPEFF_AMINO_ACID_CHANGE=Y523;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48433872_48434134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XYLT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000017003    GT:AD:DP:GQ:PL    1/1:1,44:45:68.30:1219,68,0
17    48445674    rs111380254    CCTGGTCAG    C    428.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=90.6912;IndelType=D;MQ=44.62;MQ0=0;QD=35.68;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL27;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000503633    GT:AD:DP:GQ:PL    1/1:7,5:12:18.06:470,18,0
17    48448023    rs16948951    C    G    996.41    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=4.833;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3569;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=23.72;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225969    GT:AD:DP:GQ:PL    0/1:13,29:42:99:1026,0,297
17    48450227    rs11871126    C    T    673.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225969    GT:AD:DP:GQ:PL    1/1:0,27:27:57.14:707,57,0
17    48452776    rs76372682    A    C    1226.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.07;SNPEFF_AMINO_ACID_CHANGE=E69D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48452546_48453344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338165    GT:AD:DP:GQ:PL    1/1:0,33:34:96.29:1260,96,0
17    48452978    rs3060668    A    AAGC    3731.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=0;HaplotypeScore=166.5538;IndelType=I;MQ=56.09;MQ0=0;QD=63.25;SNPEFF_AMINO_ACID_CHANGE=K137KQ;SNPEFF_CODON_CHANGE=aag/aAGCag;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_17_48452546_48453344;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338165    GT:AD:DP:GQ:PL    1/1:3,52:59:99:3732,169,0
17    48455985    rs2189712    A    T    910.94    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=64;Dels=0.0;FS=3.53;HRun=0;HaplotypeScore=1.9947;MQ=59.42;MQ0=0;MQRankSum=0.915;QD=14.23;ReadPosRankSum=0.089;SNPEFF_AMINO_ACID_CHANGE=S153C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48455961_48456042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000511519    GT:AD:DP:GQ:PL    0/1:30,34:64:99:941,0,883
17    48456193    rs12450550    T    C    573.11    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=44;Dels=0.0;FS=15.13;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.164;QD=13.03;ReadPosRankSum=-2.655;SNPEFF_AMINO_ACID_CHANGE=I350T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48456135_48456256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338165    GT:AD:DP:GQ:PL    0/1:23,21:44:99:603,0,680
17    48457567    rs917029    G    A    131.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510007    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
17    48460745    rs3744525    C    G    136.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.098;QD=13.61;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338165    GT:AD:DP:GQ:PL    0/1:5,5:10:99:166,0,172
17    48462233    rs1468318    T    C    35.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.02;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338165    GT:AD:DP:GQ:PL    0/1:2,3:5:60.75:65,0,61
17    48462239    rs1468317    T    C    163.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338165    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
17    48465636    rs3760412    A    G    75.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.02;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225972    GT:AD:DP:GQ:PL    0/1:2,3:5:64.91:105,0,65
17    48469538    rs2412314    G    A    69.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.5;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225972    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:100,0,29
17    48469724    rs757509    T    C    666.14    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.629;DB;DP=45;Dels=0.0;FS=4.332;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.627;QD=14.8;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225972    GT:AD:DP:GQ:PL    0/1:24,21:45:99:696,0,653
17    48470462    rs917027    A    C    67.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225972    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:99,9,0
17    48472270    rs3760407    C    T    766.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225972    GT:AD:DP:GQ:PL    1/1:0,23:23:60.17:799,60,0
17    48474501    rs72832501    G    A    351.28    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.771;DB;DP=31;Dels=0.0;FS=2.222;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=11.33;ReadPosRankSum=-0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225972    GT:AD:DP:GQ:PL    0/1:16,15:31:99:381,0,563
17    48539035    rs9674937    T    C    581.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.518;DB;DP=54;Dels=0.0;FS=5.94;HRun=0;HaplotypeScore=0.9469;MQ=59.14;MQ0=0;MQRankSum=0.062;QD=10.77;ReadPosRankSum=-1.183;SNPEFF_AMINO_ACID_CHANGE=C138R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48538994_48539047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506582    GT:AD:DP:GQ:PL    0/1:27,27:54:99:612,0,854
17    48539997    rs8082089    T    C    242.47    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.748;MQ=59.23;MQ0=0;MQRankSum=0.209;QD=8.08;ReadPosRankSum=0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503408    GT:AD:DP:GQ:PL    0/1:17,13:30:99:272,0,607
17    48540960    rs3744522    C    G    109.17    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=9.92;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503408    GT:AD:DP:GQ:PL    0/1:6,5:11:99:139,0,206
17    48541470    .    G    A    63.56    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=3.53;ReadPosRankSum=-0.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503408    GT:AD:DP:GQ:PL    0/1:14,4:18:93.56:94,0,438
17    48541707    rs898455    G    A    349.27    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.346;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=12.04;ReadPosRankSum=-1.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503408    GT:AD:DP:GQ:PL    0/1:16,13:29:99:379,0,572
17    48542572    rs898454    C    G    307.91    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=19;Dels=0.0;FS=2.629;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=16.21;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ACSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503408    GT:AD:DP:GQ:PL    0/1:8,11:19:99:338,0,210
17    48557326    rs2290862    G    A    481.46    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4947;MQ=60.0;MQ0=0;MQRankSum=-0.086;QD=7.52;ReadPosRankSum=-1.498;SNPEFF_AMINO_ACID_CHANGE=A119T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48557241_48557445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258955    GT:AD:DP:GQ:PL    0/1:42,22:64:99:511,0,1159
17    48557348    rs2290861    T    C    362.98    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.762;DB;DP=65;Dels=0.0;FS=1.108;HRun=0;HaplotypeScore=2.5689;MQ=59.65;MQ0=0;MQRankSum=0.442;QD=5.5;ReadPosRankSum=-0.056;SNPEFF_AMINO_ACID_CHANGE=L126S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48557241_48557445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000258955    GT:AD:DP:GQ:PL    0/1:48,17:65:99:393,0,1453
17    48559559    rs7210579    A    G    1018.15    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=62;Dels=0.0;FS=3.074;HRun=1;HaplotypeScore=0.9999;MQ=59.25;MQ0=0;MQRankSum=0.696;QD=16.42;ReadPosRankSum=-0.195;SNPEFF_AMINO_ACID_CHANGE=V194;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48559452_48559817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSAD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000258955    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1048,0,799
17    48560883    rs1551717    A    G    143.79    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.97;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443328    GT:AD:DP:GQ:PL    0/1:2,6:8:60.23:174,0,60
17    48562047    rs72834177    T    G    126.80    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.165;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=57.65;MQ0=0;MQRankSum=-0.241;QD=5.76;ReadPosRankSum=-0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RSAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443328    GT:AD:DP:GQ:PL    0/1:9,13:22:99:157,0,258
17    48595109    rs56994118    T    C    296.17    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.658;QD=15.59;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323776    GT:AD:DP:GQ:PL    0/1:6,13:19:99:326,0,190
17    48595198    rs56134783    C    T    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323776    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
17    48595988    rs8064455    G    C    2193.09    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=150;Dels=0.0;FS=0.615;HRun=0;HaplotypeScore=1.7552;MQ=59.69;MQ0=0;MQRankSum=-0.643;QD=14.62;ReadPosRankSum=-0.301;SNPEFF_AMINO_ACID_CHANGE=E191D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48595902_48596085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436259    GT:AD:DP:GQ:PL    0/1:77,73:150:99:2223,0,2463
17    48597114    rs28498091    C    T    70.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.76;ReadPosRankSum=-1.537;SNPEFF_AMINO_ACID_CHANGE=H300;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48597001_48597148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000436259    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,101
17    48598279    rs1460214    T    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    48598291    rs9913197    T    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    48598785    rs1380657    G    A    1638.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.61;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=A387T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48598677_48598792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436259    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1672,123,0
17    48599092    rs9912112    G    A    40.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
17    48599195    rs9893172    T    C    167.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=33.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452039    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
17    48599450    rs7216625    A    T    895.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452039    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:928,69,0
17    48599656    rs7216366    C    T    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    48601328    rs6504666    G    A    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452039    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    48601381    rs2277628    G    C    50.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    48602412    rs1106730    C    A    554.68    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=34;Dels=0.0;FS=5.584;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.312;QD=16.31;ReadPosRankSum=0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459754    GT:AD:DP:GQ:PL    0/1:15,19:34:99:585,0,375
17    48603020    rs112712266    C    CTCTTTTTTTTTTTT    2121.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=255.3406;IndelType=I;MQ=35.07;MQ0=0;QD=151.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459754    GT:AD:DP:GQ:PL    1/1:1,1:14:42.14:2164,42,0
17    48603503    rs9890721    C    T    776.59    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=70;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.328;QD=11.09;ReadPosRankSum=1.232;SNPEFF_AMINO_ACID_CHANGE=R688W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48603242_48603628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436259    GT:AD:DP:GQ:PL    0/1:44,26:70:99:807,0,1368
17    48605286    rs898451    C    G    78.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459754    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
17    48605419    rs898452    G    A    1300.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323776    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1333,99,0
17    48605780    rs8067733    C    G    188.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323776    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:221,18,0
17    48605826    rs8070515    G    C    81.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323776    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
17    48606313    rs2290864    G    A    1246.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.36;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485169    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1279,99,0
17    48606537    rs1133818    C    G    1291.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_AMINO_ACID_CHANGE=S910R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48606379_48606549;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436259    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1325,99,0
17    48606606    rs4793659    G    A    425.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485169    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:459,33,0
17    48606735    rs4793660    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485169    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    48606737    rs4794155    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485169    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    48608717    rs1064055    T    C    729.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=T961;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48608688_48608858;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYCBPAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323776    GT:AD:DP:GQ:PL    1/1:0,22:22:60.16:763,60,0
17    48613837    rs3785915    A    G    275.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.59;SNPEFF_AMINO_ACID_CHANGE=Q56R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48613782_48613986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442715    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:309,27,0
17    48615329    rs2306001    G    A    128.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503246    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
17    48616114    rs4794158    C    G    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.4;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503246    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:70,0,33
17    48617829    rs2306002    G    A    184.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503246    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:218,18,0
17    48618106    rs7215760    A    G    280.90    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.208;DB;DP=27;Dels=0.0;FS=7.048;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.415;QD=10.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503246    GT:AD:DP:GQ:PL    0/1:16,11:27:99:311,0,453
17    48619249    rs4794159    C    A    278.22    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.155;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.17;MQ0=0;MQRankSum=-0.465;QD=11.13;ReadPosRankSum=1.767;SNPEFF_AMINO_ACID_CHANGE=P544T;SNPEFF_CODON_CHANGE=Ccg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48619205_48621111;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268933    GT:AD:DP:GQ:PL    0/1:14,11:25:99:308,0,371
17    48619272    rs111678638    G    A    249.03    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.92;MQ0=0;MQRankSum=-0.165;QD=10.83;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=Q551;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48619205_48621111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268933    GT:AD:DP:GQ:PL    0/1:12,11:23:99:279,0,383
17    48619290    rs112657244    G    A    173.64    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=21;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.7887;MQ=56.62;MQ0=0;MQRankSum=-1.2;QD=8.27;ReadPosRankSum=1.022;SNPEFF_AMINO_ACID_CHANGE=P557;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48619205_48621111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268933    GT:AD:DP:GQ:PL    0/1:12,9:21:99:204,0,324
17    48625223    rs76022681    C    T    107.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.93;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268933    GT:AD:DP:GQ:PL    0/1:2,4:6:62.59:138,0,63
17    48625543    rs12943759    G    A    212.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=2.616;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.6;QD=17.72;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268933    GT:AD:DP:GQ:PL    0/1:4,8:12:99:243,0,134
17    48625828    rs8076470    C    T    363.28    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.977;DB;DP=31;Dels=0.0;FS=1.367;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=11.72;ReadPosRankSum=0.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268933    GT:AD:DP:GQ:PL    0/1:17,14:31:99:393,0,562
17    48625928    rs8076632    C    G    453.39    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.332;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5627;MQ=60.0;MQ0=0;MQRankSum=2.015;QD=14.63;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=Q104E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48625915_48625979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SPATA20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000006658    GT:AD:DP:GQ:PL    0/1:13,18:31:99:483,0,321
17    48628242    rs139980663    C    T    921.97    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=3.217;DB;DP=44;Dels=0.0;FS=3.078;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=20.95;ReadPosRankSum=0.733;SNPEFF_AMINO_ACID_CHANGE=Y389;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48628069_48628278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SPATA20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393244    GT:AD:DP:GQ:PL    0/1:18,26:44:99:952,0,483
17    48629458    rs8065903    A    G    304.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=25.36;SNPEFF_AMINO_ACID_CHANGE=K565R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48629330_48629541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SPATA20;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000393244    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:337,27,0
17    48638865    .    G    A    64.75    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.47;ReadPosRankSum=-1.203;SNPEFF_AMINO_ACID_CHANGE=Q15;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48638449_48639062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    0/1:7,3:10:94.74:95,0,173
17    48646376    rs58450142    T    TGTGTGTGTGTGTTG    2548.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=240.5855;IndelType=I;MQ=49.41;MQ0=0;QD=115.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,10:22:66.22:2590,66,0
17    48646377    rs401388    T    G    131.70    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.88;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=49.41;MQ0=0;MQRankSum=1.097;QD=5.99;ReadPosRankSum=-3.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    0/1:17,5:22:92.35:162,0,92
17    48649777    rs916979    C    G    63.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,3:3:9:95,9,0
17    48652833    rs16949166    C    T    170.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
17    48652875    rs198550    A    G    427.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:461,39,0
17    48653354    rs12449998    C    A    289.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=R531;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48652904_48653687;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:322,24,0
17    48655493    rs198551    A    G    1510.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9987;MQ=59.57;MQ0=0;QD=27.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1544,129,0
17    48667734    rs12936750    A    G    500.86    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.428;QD=15.18;ReadPosRankSum=-0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    0/1:15,18:33:99:531,0,482
17    48668013    rs8064333    G    C    735.64    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=54;Dels=0.0;FS=2.558;HRun=0;HaplotypeScore=0.0;MQ=56.34;MQ0=0;MQRankSum=0.787;QD=13.62;ReadPosRankSum=0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    0/1:31,23:54:99:766,0,862
17    48668021    rs34926473    AT    A    686.07    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=5.788;DB;DP=47;FS=0.0;HRun=1;HaplotypeScore=209.4137;IndelType=D;MQ=55.77;MQ0=0;MQRankSum=1.273;QD=14.6;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    0/1:26,21:47:99:725,0,1095
17    48668653    rs7359536    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    48668720    rs7359527    C    A    85.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
17    48669026    rs11079918    T    C    431.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.664;DB;DP=24;Dels=0.0;FS=6.761;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=17.98;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    0/1:8,16:24:99:461,0,230
17    48678325    rs198530    A    T    1534.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1568,114,0
17    48701800    rs2301835    C    T    193.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.694;QD=12.87;ReadPosRankSum=-0.694;SNPEFF_AMINO_ACID_CHANGE=L1953;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48701721_48701890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000514717    GT:AD:DP:GQ:PL    0/1:5,10:15:99:223,0,104
17    48703172    rs72837512    A    C    38.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352832    GT:AD:DP:GQ:PL    0/1:2,2:4:30.98:69,0,31
17    48703752    rs739925    T    C    134.20    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=26;Dels=0.0;FS=10.243;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.908;QD=5.16;ReadPosRankSum=-0.231;SNPEFF_AMINO_ACID_CHANGE=P2052;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48703681_48704626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358244    GT:AD:DP:GQ:PL    0/1:19,7:26:99:164,0,645
17    48746135    rs879459    C    T    179.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427699    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:212,18,0
17    48746923    rs4794176    G    C    582.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427699    GT:AD:DP:GQ:PL    1/1:0,22:22:51.14:615,51,0
17    48752890    rs2072366    G    A    89.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.38;QD=6.41;ReadPosRankSum=-1.977;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503304    GT:AD:DP:GQ:PL    0/1:7,7:14:99:120,0,256
17    48755002    rs2240802    G    A    980.51    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.138;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.2323;MQ=58.36;MQ0=0;MQRankSum=-0.331;QD=13.81;ReadPosRankSum=-0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000503304    GT:AD:DP:GQ:PL    0/1:39,32:71:99:1011,0,1175
17    48761105    rs2277624    C    T    309.28    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.861;DB;DP=31;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.5;QD=9.98;ReadPosRankSum=-0.34;SNPEFF_AMINO_ACID_CHANGE=H1314;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48760971_48761117;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285238    GT:AD:DP:GQ:PL    0/1:18,13:31:99:339,0,461
17    48768486    rs1051640    A    G    310.38    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.258;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.818;QD=10.35;ReadPosRankSum=0.559;SNPEFF_AMINO_ACID_CHANGE=E1503;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48768453_48769063;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285238    GT:AD:DP:GQ:PL    0/1:19,11:30:99:340,0,595
17    48773608    .    GA    G    128.08    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DP=11;FS=0.0;HRun=11;HaplotypeScore=26.1787;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=1.271;QD=11.64;ReadPosRankSum=0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285238    GT:AD:DP:GQ:PL    0/1:3,8:11:34.02:167,0,34
17    48785100    rs3744519    C    A    71.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.72;QD=11.91;ReadPosRankSum=1.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507114    GT:AD:DP:GQ:PL    0/1:2,4:6:20.46:101,0,20
17    48785165    rs8068442    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507114    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    48797210    rs11398903    T    TG    346.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=20.3461;IndelType=I;MQ=58.63;MQ0=0;QD=38.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240304    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:389,27,0
17    48817598    rs78919699    C    CT    169.48    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=20;FS=0.0;HRun=9;HaplotypeScore=57.3902;IndelType=I;MQ=58.84;MQ0=0;MQRankSum=-1.445;QD=8.47;ReadPosRankSum=-0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311571    GT:AD:DP:GQ:PL    0/1:12,8:20:99:209,0,229
17    48821201    rs9894501    T    C    289.82    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=29;Dels=0.0;FS=1.596;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.441;QD=9.99;ReadPosRankSum=-2.112;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504563    GT:AD:DP:GQ:PL    0/1:17,12:29:99:320,0,547
17    48821207    rs9894508    T    C    234.24    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.088;DB;DP=27;Dels=0.0;FS=1.768;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.23;QD=8.68;ReadPosRankSum=-1.632;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504563    GT:AD:DP:GQ:PL    0/1:17,10:27:99:264,0,599
17    48821340    rs79777439    G    A    77.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.48;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504563    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:108,0,31
17    48821349    rs4794180    T    G    135.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504563    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:168,12,0
17    48823815    rs2302288    C    T    1142.70    PASS    AB=0.328;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=61;Dels=0.0;FS=1.829;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.259;QD=18.73;ReadPosRankSum=1.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LUC7L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504563    GT:AD:DP:GQ:PL    0/1:20,41:61:99:1173,0,635
17    48913571    rs4420571    C    T    43.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.68;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFIKKN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311378    GT:AD:DP:GQ:PL    0/1:2,3:5:62.69:73,0,63
17    48917333    rs9675120    C    T    291.99    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.36;DB;DP=29;Dels=0.0;FS=1.583;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.271;QD=10.07;ReadPosRankSum=1.031;SNPEFF_AMINO_ACID_CHANGE=S135;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48916860_48918669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFIKKN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426127    GT:AD:DP:GQ:PL    0/1:18,11:29:99:322,0,566
17    48940422    rs4626    T    C    731.67    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.783;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.047;QD=13.81;ReadPosRankSum=0.991;SNPEFF_AMINO_ACID_CHANGE=K319;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_48940341_48941524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000268957    GT:AD:DP:GQ:PL    0/1:29,24:53:99:762,0,860
17    49041948    .    C    CA    110.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.537;DP=18;FS=0.0;HRun=17;HaplotypeScore=162.733;IndelType=I;MQ=47.88;MQ0=0;MQRankSum=-0.967;QD=6.16;ReadPosRankSum=-0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357122    GT:AD:DP:GQ:PL    1/1:7,8:18:2.23:150,2,0
17    49048273    .    TG    T    326.14    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.376;DP=21;FS=3.136;HRun=1;HaplotypeScore=78.9792;IndelType=D;MQ=59.11;MQ0=0;MQRankSum=-0.107;QD=15.53;ReadPosRankSum=-1.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000513746    GT:AD:DP:GQ:PL    0/1:11,10:21:99:365,0,246
17    49054439    rs9332407    T    C    1629.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262013    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1663,135,0
17    49060107    rs12453116    T    G    154.38    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.549;QD=8.13;ReadPosRankSum=-0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262013    GT:AD:DP:GQ:PL    0/1:12,7:19:99:184,0,454
17    49067763    rs9899816    T    C    332.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506483    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
17    49075645    rs8081045    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511795    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
17    49076857    .    T    TA    38.47    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DP=32;FS=0.0;HRun=15;HaplotypeScore=229.5766;IndelType=I;MQ=51.49;MQ0=0;MQRankSum=0.135;QD=1.2;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511795    GT:AD:DP:GQ:PL    0/1:22,8:32:77.50:77,0,90
17    49076907    rs149142116    TA    T    55.01    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=19;FS=0.0;HRun=12;HaplotypeScore=114.6434;IndelType=D;MQ=54.95;MQ0=0;MQRankSum=-0.648;QD=2.9;ReadPosRankSum=-1.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511795    GT:AD:DP:GQ:PL    0/1:14,5:19:94.04:94,0,229
17    49097501    rs2286649    C    A    179.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.892;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=12.81;ReadPosRankSum=-0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510855    GT:AD:DP:GQ:PL    0/1:6,8:14:99:209,0,177
17    49124845    rs11400140    G    GA    1729.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=6;HaplotypeScore=103.1784;IndelType=I;MQ=60.09;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262013    GT:AD:DP:GQ:PL    1/1:2,45:48:99:1772,141,0
17    49124944    rs12453437    C    T    110.91    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.32;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262013    GT:AD:DP:GQ:PL    0/1:5,4:9:99:141,0,147
17    49156907    rs8081821    A    G    890.80    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.399;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.429;QD=16.2;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262013    GT:AD:DP:GQ:PL    0/1:28,27:55:99:921,0,927
17    49197654    rs5820842    A    AC    204.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=4;HaplotypeScore=46.3484;IndelType=I;MQ=56.04;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262013    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
17    49231623    rs34431255    C    G    540.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME1-NME2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393193    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:574,48,0
17    49231627    rs11556835    G    A    592.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.3;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NME1-NME2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393193    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:626,48,0
17    49257790    rs3803886    C    T    343.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=26.43;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405860    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:377,30,0
17    49337803    rs8069804    G    A    160.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376381    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
17    49374531    .    T    C    74.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.82;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UTP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508506    GT:AD:DP:GQ:PL    0/1:2,3:5:64.58:104,0,65
17    49708688    rs1043561    T    A    133.85    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=16.73;ReadPosRankSum=-0.684;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    0/1:3,5:8:84.07:164,0,84
17    49710713    rs3815371    G    A    61.68    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=6.17;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    0/1:7,3:10:91.67:92,0,258
17    49710717    rs16950194    A    G    229.59    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.166;QD=22.96;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    0/1:3,7:10:91.14:260,0,91
17    49711041    rs59307927    A    ACCC    581.61    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=2.536;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=98.3181;IndelType=I;MQ=54.87;MQ0=0;MQRankSum=0.543;QD=32.31;ReadPosRankSum=-0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    0/1:7,11:18:99:621,0,337
17    49713205    rs10514986    G    T    216.95    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.178;QD=7.75;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    0/1:20,8:28:99:247,0,633
17    49713300    rs11870209    G    A    670.08    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.425;DB;DP=52;Dels=0.0;FS=10.488;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.255;QD=12.89;ReadPosRankSum=-1.651;SNPEFF_AMINO_ACID_CHANGE=Y235;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_49713216_49713370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    0/1:28,24:52:99:700,0,815
17    49730877    rs7220388    T    C    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    50008688    rs203084    G    A    116.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
17    50234899    rs2938135    G    C    77.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285273    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:110,9,0
17    51063941    rs2271474    C    G    1600.42    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.968;DB;DP=93;Dels=0.0;FS=0.872;HRun=0;HaplotypeScore=2.5062;MQ=60.0;MQ0=0;MQRankSum=1.97;QD=17.21;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC102948.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441889    GT:AD:DP:GQ:PL    0/1:34,59:93:99:1630,0,998
17    51901084    rs3803825    A    G    435.47    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=0.864;DB;DP=39;Dels=0.0;FS=2.869;HRun=0;HaplotypeScore=2.9572;MQ=59.41;MQ0=0;MQRankSum=0.099;QD=11.17;ReadPosRankSum=-1.43;SNPEFF_AMINO_ACID_CHANGE=L153;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_51900671_51901090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416491    GT:AD:DP:GQ:PL    0/1:22,17:39:99:465,0,709
17    51901385    rs3803826    C    T    580.13    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.56;MQ0=0;MQRankSum=-0.102;QD=11.16;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=L219;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_51901196_51902553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416491    GT:AD:DP:GQ:PL    0/1:30,22:52:99:610,0,973
17    51901643    rs4561518    C    T    691.73    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.665;DB;DP=37;Dels=0.0;FS=2.87;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.108;QD=18.7;ReadPosRankSum=-0.139;SNPEFF_AMINO_ACID_CHANGE=P305S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_51901196_51902553;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416491    GT:AD:DP:GQ:PL    0/1:15,22:37:99:722,0,439
17    51901703    rs4561519    C    G    555.13    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=1.343;DB;DP=32;Dels=0.0;FS=1.397;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.074;QD=17.35;ReadPosRankSum=-0.422;SNPEFF_AMINO_ACID_CHANGE=R325G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_51901196_51902553;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416491    GT:AD:DP:GQ:PL    0/1:13,19:32:99:585,0,412
17    51902252    rs3826355    C    T    1788.11    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.012;DB;DP=95;Dels=0.0;FS=4.166;HRun=1;HaplotypeScore=2.7898;MQ=59.51;MQ0=0;MQRankSum=0.019;QD=18.82;ReadPosRankSum=0.019;SNPEFF_AMINO_ACID_CHANGE=L508;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_51901196_51902553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416491    GT:AD:DP:GQ:PL    0/1:38,56:95:99:1818,0,1103
17    51902492    rs10693171    A    AAAT    473.11    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=10;FS=6.99;HRun=0;HaplotypeScore=27.7261;IndelType=I;MQ=56.38;MQ0=0;MQRankSum=0.0;QD=47.31;ReadPosRankSum=-1.733;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268919    GT:AD:DP:GQ:PL    0/1:2,8:10:69.89:512,0,70
17    52991026    rs71361734    CAAAAAA    C    181.54    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=25;FS=0.0;HRun=20;HaplotypeScore=231.7298;IndelType=D;MQ=41.85;MQ0=0;MQRankSum=-2.415;QD=7.26;ReadPosRankSum=2.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:14,6:25:99:221,0,1089
17    52991371    rs74969989    T    C    52.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.52;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:4,3:7:82.66:83,0,143
17    52992128    rs3834969    TA    T    1144.70    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=7.123;DB;DP=72;FS=4.385;HRun=2;HaplotypeScore=176.8353;IndelType=D;MQ=60.75;MQ0=0;MQRankSum=0.535;QD=15.9;ReadPosRankSum=-1.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1184,0,1392
17    52992268    rs9910653    G    A    40.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,73
17    52993346    rs2934935    G    A    503.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:536,39,0
17    53007655    rs12939352    T    G    406.95    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.407;DB;DP=36;Dels=0.0;FS=2.527;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=11.3;ReadPosRankSum=-0.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:21,15:36:99:437,0,717
17    53013980    rs17745189    A    G    218.71    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=22;Dels=0.0;FS=2.643;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.469;QD=9.51;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:13,9:22:99:249,0,442
17    53014442    rs113967296    C    CT    324.34    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=0.32;DB;DP=66;FS=8.978;HRun=14;HaplotypeScore=482.4599;IndelType=I;MQ=53.75;MQ0=0;MQRankSum=-0.2;QD=4.91;ReadPosRankSum=-1.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:44,15:66:99:363,0,309
17    53026823    rs138105365    TAAAAG    T    285.82    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.766;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=86.8568;IndelType=D;MQ=53.95;MQ0=0;MQRankSum=-2.115;QD=17.86;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:10,5:16:99:325,0,875
17    53041965    rs12951542    T    C    201.47    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.794;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.868;QD=13.43;ReadPosRankSum=0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348161    GT:AD:DP:GQ:PL    0/1:8,7:15:99:231,0,250
17    53046072    rs17209882    C    G    190.80    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.214;DB;DP=38;Dels=0.0;FS=1.702;HRun=0;HaplotypeScore=0.0;MQ=56.89;MQ0=0;MQRankSum=-1.888;QD=5.02;ReadPosRankSum=0.798;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299335    GT:AD:DP:GQ:PL    0/1:24,14:38:99:221,0,613
17    53063743    rs958556    C    T    440.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299341    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:474,36,0
17    53067993    rs8082471    T    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299341    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
17    53076799    rs1156287    G    A    683.75    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.338;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.395;QD=17.53;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=G15R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_53076706_53076812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299341    GT:AD:DP:GQ:PL    0/1:18,21:39:99:714,0,568
17    53076986    rs11658717    G    A    478.04    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.1;QD=15.42;ReadPosRankSum=0.38;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000398391    GT:AD:DP:GQ:PL    0/1:13,18:31:99:508,0,384
17    53111383    rs1484776    A    C    75.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.61;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299341    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,108
17    53120855    rs1894936    A    G    149.17    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.019;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.079;QD=5.52;ReadPosRankSum=1.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463234    GT:AD:DP:GQ:PL    0/1:20,7:27:99:179,0,762
17    53124546    rs71361750    C    CGT    266.98    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=190.0371;IndelType=I;MQ=57.35;MQ0=0;MQRankSum=-1.236;QD=7.42;ReadPosRankSum=1.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299341    GT:AD:DP:GQ:PL    0/1:24,8:36:99:306,0,171
17    53155666    rs1026961    C    T    166.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.103;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=58.55;MQ0=0;MQRankSum=-1.103;QD=10.43;ReadPosRankSum=0.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376352    GT:AD:DP:GQ:PL    0/1:8,8:16:99:197,0,283
17    53158361    rs2628302    G    A    300.63    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.746;DB;DP=26;Dels=0.0;FS=5.142;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=11.56;ReadPosRankSum=-0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=STXBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376352    GT:AD:DP:GQ:PL    0/1:14,12:26:99:331,0,492
17    53342796    rs10635027    G    GTTTC    500.40    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.821;DB;DP=19;FS=3.522;HRun=0;HaplotypeScore=70.7245;IndelType=I;MQ=60.57;MQ0=0;MQRankSum=0.133;QD=26.34;ReadPosRankSum=2.977;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430986    GT:AD:DP:GQ:PL    0/1:11,8:19:99:539,0,416
17    53392852    rs2287223    G    A    843.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226067    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:877,66,0
17    53478675    rs3744308    A    G    74.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262065    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:106,9,0
17    53479066    rs7207017    C    T    37.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262065    GT:AD:DP:GQ:PL    0/1:2,2:4:67.97:68,0,72
17    53485186    rs2286806    C    T    472.57    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.233;DB;DP=31;Dels=0.0;FS=3.917;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.889;QD=15.24;ReadPosRankSum=-1.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262065    GT:AD:DP:GQ:PL    0/1:15,16:31:99:503,0,409
17    53498846    rs75646226    C    T    157.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262065    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:191,15,0
17    53498990    rs78612327    T    C    695.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.52;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262065    GT:AD:DP:GQ:PL    1/1:0,29:30:57.18:729,57,0
17    53844833    rs67136285    CT    C    810.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=10;HaplotypeScore=117.9895;IndelType=D;MQ=59.35;MQ0=0;QD=22.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268896    GT:AD:DP:GQ:PL    1/1:3,33:36:98.93:852,99,0
17    53844903    rs35052837    G    A    250.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.94;MQ0=0;QD=22.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268896    GT:AD:DP:GQ:PL    1/1:0,10:11:24.06:283,24,0
17    53851071    rs2960063    A    G    575.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268896    GT:AD:DP:GQ:PL    1/1:1,17:18:45.14:608,45,0
17    53851078    rs2912558    T    C    646    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268896    GT:AD:DP:GQ:PL    1/1:0,22:22:51.14:679,51,0
17    53851228    rs2960062    C    T    499.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.23;SNPEFF_AMINO_ACID_CHANGE=I140;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_53851085_53851256;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCTP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325214    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:533,39,0
17    53852107    rs79563879    C    T    359.89    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.96;DB;DP=29;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=4.5207;MQ=56.74;MQ0=0;MQRankSum=-0.066;QD=12.41;ReadPosRankSum=1.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268896    GT:AD:DP:GQ:PL    0/1:16,13:29:99:390,0,580
17    53853188    rs34519962    A    C    162.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268896    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
17    54428067    rs2215756    C    T    933.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:966,72,0
17    54428436    rs17759670    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    54449900    rs112784925    AT    A    112.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=16;HaplotypeScore=92.7788;IndelType=D;MQ=55.21;MQ0=0;QD=7.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:4,7:15:30.66:155,31,0
17    54450038    rs957724    C    A    4262.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.607;MQ=59.05;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=L214;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_54450007_54450201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4263,319,0
17    54450134    rs8069322    G    A    5179.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.208;DB;DP=152;Dels=0.0;FS=4.386;HRun=2;HaplotypeScore=0.9999;MQ=59.24;MQ0=0;MQRankSum=-1.094;QD=34.07;ReadPosRankSum=-0.456;SNPEFF_AMINO_ACID_CHANGE=K246;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_54450007_54450201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:1,151:152:99:5179,355,0
17    54517855    rs7224536    T    C    830.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:864,66,0
17    54526301    rs2024316    C    T    164.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
17    54534634    rs10852985    G    A    3118.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_AMINO_ACID_CHANGE=V445I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_54534618_54534750;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3151,229,0
17    54558282    rs68128704    GTA    G    785.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=110.9426;IndelType=D;MQ=56.13;MQ0=0;QD=41.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKFN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318698    GT:AD:DP:GQ:PL    1/1:2,17:19:57.17:827,57,0
17    54892126    rs4794668    A    G    922.69    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.854;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3668;MQ=59.47;MQ0=0;MQRankSum=2.071;QD=11.68;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397861    GT:AD:DP:GQ:PL    0/1:42,37:79:99:953,0,1424
17    54911929    rs2235092    G    A    64.88    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.922;QD=8.11;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284061    GT:AD:DP:GQ:PL    0/1:3,5:8:50.89:95,0,51
17    54912737    rs7225724    A    G    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284061    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:73,0,30
17    54921322    rs3760157    G    A    438.33    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.065;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.435;QD=23.07;ReadPosRankSum=-0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284061    GT:AD:DP:GQ:PL    0/1:5,14:19:99:468,0,155
17    54921494    rs3760158    A    C    1204.25    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=1.332;DB;DP=67;Dels=0.0;FS=0.959;HRun=1;HaplotypeScore=3.2482;MQ=59.66;MQ0=0;MQRankSum=-1.074;QD=17.97;ReadPosRankSum=0.058;SNPEFF_AMINO_ACID_CHANGE=T193;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_54921380_54921539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284061    GT:AD:DP:GQ:PL    0/1:26,41:67:99:1234,0,775
17    54925262    rs6503775    G    T    432.09    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.815;DB;DP=51;Dels=0.0;FS=5.873;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.446;QD=8.47;ReadPosRankSum=-1.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284061    GT:AD:DP:GQ:PL    0/1:32,18:51:99:462,0,1075
17    54926338    rs2271898    C    T    122.06    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;Dels=0.0;FS=4.472;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.72;ReadPosRankSum=-1.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGKE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284061    GT:AD:DP:GQ:PL    0/1:9,5:14:99:152,0,327
17    54976337    rs2525995    A    G    103.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316881    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
17    54978794    rs205498    G    A    3719.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.6;MQ0=0;QD=35.77;SNPEFF_AMINO_ACID_CHANGE=P358L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_54978780_54978939;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316881    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3720,283,0
17    54979128    rs205497    G    A    123.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316881    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:156,12,0
17    55026912    rs12942251    A    G    546.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240316    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:580,45,0
17    55027850    rs8071691    T    C    2366.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.31;MQ0=0;QD=36.41;SNPEFF_AMINO_ACID_CHANGE=E251;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_55027250_55028357;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COIL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240316    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2400,181,0
17    55027965    rs143886618    T    C    1047.88    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.042;DB;DP=74;Dels=0.0;FS=3.247;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.104;QD=14.16;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=N213S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_55027250_55028357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COIL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240316    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1078,0,1112
17    55038490    rs2301823    C    A    536.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COIL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240316    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:570,45,0
17    55058689    rs3095499    G    C    135.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262288    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:168,15,0
17    55064799    rs2287000    G    C    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262288    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
17    55065530    rs12453004    A    G    1333.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.54;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262288    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1366,105,0
17    55065558    rs113919638    T    TA    2292.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=2;HaplotypeScore=255.5627;IndelType=I;MQ=60.56;MQ0=0;QD=39.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262288    GT:AD:DP:GQ:PL    1/1:4,54:58:99:2334,163,0
17    55074482    rs71698261    T    TA    269.52    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=41;FS=3.59;HRun=14;HaplotypeScore=181.698;IndelType=I;MQ=57.69;MQ0=0;MQRankSum=-0.741;QD=6.57;ReadPosRankSum=-1.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262288    GT:AD:DP:GQ:PL    0/1:24,14:41:99:309,0,175
17    55182811    rs5821160    CT    C    1438.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=2;HaplotypeScore=124.559;IndelType=D;MQ=60.27;MQ0=0;QD=35.97;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_55182802_55182812;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000427138    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1481,114,0
17    55183203    rs2230772    T    C    1478.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_AMINO_ACID_CHANGE=D126;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_55182802_55184539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314126    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1511,117,0
17    55183716    rs1050515    T    C    3130.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=59.24;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=D297;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_55182802_55184539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314126    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3164,244,0
17    55184680    rs2241073    T    G    252.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314126    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
17    55189723    rs3094444    T    G    473.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314126    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:507,39,0
17    55334793    .    T    TC    158.83    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DP=18;FS=0.0;HRun=9;HaplotypeScore=41.3464;IndelType=I;MQ=59.93;MQ0=0;MQRankSum=1.588;QD=8.82;ReadPosRankSum=-2.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284073    GT:AD:DP:GQ:PL    0/1:11,7:18:99:198,0,183
17    55674375    rs74783910    G    T    175.03    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.935;QD=13.46;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284073    GT:AD:DP:GQ:PL    0/1:7,6:13:99:205,0,249
17    55693612    rs11079313    G    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284073    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    55704465    rs1861474    A    G    204.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284073    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
17    55752644    rs62060661    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284073    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    55822171    rs12451748    T    C    218.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007431.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299415    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:251,18,0
17    55822214    rs12451753    T    A    279.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.98;SNPEFF_AMINO_ACID_CHANGE=G140;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_55821842_55822673;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007431.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299415    GT:AD:DP:GQ:PL    1/1:0,9:10:24.08:313,24,0
17    55822467    rs12449409    G    A    1099.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_AMINO_ACID_CHANGE=A56V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_55821842_55822673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007431.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299415    GT:AD:DP:GQ:PL    1/1:0,31:31:90.24:1132,90,0
17    55917353    rs2099914    C    G    571.19    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=3.717;DB;DP=32;Dels=0.0;FS=1.987;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.253;QD=17.85;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313608    GT:AD:DP:GQ:PL    0/1:12,20:32:99:601,0,282
17    55918761    rs35764839    G    GA    182.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=11.1774;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=30.49;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313608    GT:AD:DP:GQ:PL    0/1:1,5:6:23.92:222,0,24
17    55950064    rs35704289    C    T    1101.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_AMINO_ACID_CHANGE=E248;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_55950024_55950216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUEDC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360238    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1134,87,0
17    55950826    rs11650742    G    A    377.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUEDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360238    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:410,30,0
17    55962465    rs2586051    T    C    202.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUEDC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360238    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:235,18,0
17    56083934    rs2233911    G    A    153.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258962    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:187,15,0
17    56232315    rs8071251    G    A    125.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268912    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
17    56232459    rs72232947    TTTTG    T    932.80    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=5.794;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=214.5406;IndelType=D;MQ=59.31;MQ0=0;MQRankSum=1.286;QD=19.85;ReadPosRankSum=-0.121;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268912    GT:AD:DP:GQ:PL    0/1:23,24:47:99:972,0,1356
17    56233034    rs7218964    C    A    643.61    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.926;DB;DP=46;Dels=0.0;FS=2.561;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=13.99;ReadPosRankSum=1.014;SNPEFF_AMINO_ACID_CHANGE=L174I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56232494_56233517;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000268912    GT:AD:DP:GQ:PL    0/1:25,21:46:99:674,0,844
17    56233499    rs3863502    C    T    178.73    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=25.53;ReadPosRankSum=0.742;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268912    GT:AD:DP:GQ:PL    0/1:1,6:7:15.91:209,0,16
17    56235104    rs3863503    C    A    455.65    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=0.284;DB;DP=49;Dels=0.0;FS=18.624;HRun=0;HaplotypeScore=0.0;MQ=57.82;MQ0=0;MQRankSum=0.284;QD=9.3;ReadPosRankSum=1.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268912    GT:AD:DP:GQ:PL    0/1:32,17:49:99:486,0,993
17    56235322    rs1987665    G    A    212.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268912    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
17    56247579    .    C    T    730.81    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.264;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;MQRankSum=0.705;QD=13.29;ReadPosRankSum=-0.74;SNPEFF_AMINO_ACID_CHANGE=A188V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56247017_56247940;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545221    GT:AD:DP:GQ:PL    0/1:31,24:55:99:761,0,989
17    56270121    rs12602891    T    C    94.97    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=18.99;ReadPosRankSum=-0.731;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_56270089_56270283;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225371    GT:AD:DP:GQ:PL    0/1:1,4:5:25.61:125,0,26
17    56271060    rs11079340    T    C    135.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.002;DB;DP=15;Dels=0.0;FS=8.675;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.945;QD=9.05;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225371    GT:AD:DP:GQ:PL    0/1:9,6:15:99:166,0,328
17    56271094    rs11652709    G    C    174.72    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=8.74;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=Q122H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56271075_56271192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225371    GT:AD:DP:GQ:PL    0/1:11,9:20:99:205,0,398
17    56271497    rs10853004    A    G    175.87    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.656;QD=13.53;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225371    GT:AD:DP:GQ:PL    0/1:7,6:13:99:206,0,239
17    56272390    rs2240815    A    G    405.55    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.494;QD=13.08;ReadPosRankSum=1.996;SNPEFF_AMINO_ACID_CHANGE=R220;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56272325_56272531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225371    GT:AD:DP:GQ:PL    0/1:16,15:31:99:436,0,463
17    56274133    rs3785496    A    G    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225371    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:68,0,31
17    56281674    rs137940518    G    A    599.29    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=2.259;DB;DP=45;Dels=0.0;FS=2.498;HRun=0;HaplotypeScore=0.8667;MQ=59.59;MQ0=0;MQRankSum=-0.942;QD=13.32;ReadPosRankSum=-0.556;SNPEFF_AMINO_ACID_CHANGE=G680S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56281583_56281795;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000225371    GT:AD:DP:GQ:PL    0/1:22,23:45:99:629,0,690
17    56321451    rs67390833    GACAC    G    251.68    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=98.3668;IndelType=D;MQ=57.23;MQ0=0;MQRankSum=0.067;QD=19.36;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262290    GT:AD:DP:GQ:PL    0/1:5,7:13:81.14:291,0,81
17    56348989    rs139276063    C    T    430.44    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=26;Dels=0.0;FS=9.185;HRun=0;HaplotypeScore=0.6651;MQ=58.2;MQ0=0;MQRankSum=0.097;QD=16.56;ReadPosRankSum=1.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262290    GT:AD:DP:GQ:PL    0/1:11,15:26:99:460,0,225
17    56381959    .    G    A    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268893    GT:AD:DP:GQ:PL    0/1:2,2:4:62.69:71,0,63
17    56383114    rs72839984    G    A    37.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZRAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000268893    GT:AD:DP:GQ:PL    0/1:3,2:5:67.92:68,0,74
17    56386383    .    C    CTT    236.84    PASS    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=3.927;DP=67;FS=73.322;HRun=2;HaplotypeScore=403.5333;IndelType=I;MQ=47.86;MQ0=0;MQRankSum=-3.783;QD=3.53;ReadPosRankSum=-3.783;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_56385902_56386741;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BZRAP1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000268893    GT:AD:DP:GQ:PL    0/1:50,13:67:99:276,0,1064
17    56424710    rs757485    T    C    320.65    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=0.725;DB;DP=36;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.066;QD=8.91;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT4H1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225504    GT:AD:DP:GQ:PL    0/1:23,13:36:99:351,0,795
17    56432362    rs2158460    C    G    191.48    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=15;Dels=0.0;FS=2.447;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.428;QD=12.77;ReadPosRankSum=0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407977    GT:AD:DP:GQ:PL    0/1:7,8:15:99:221,0,194
17    56435885    rs2526374    G    T    256.87    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=13.52;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=L377M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56434829_56436184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000500597    GT:AD:DP:GQ:PL    0/1:10,9:19:99:287,0,307
17    56438433    rs12150325    C    T    74.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.46;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407977    GT:AD:DP:GQ:PL    0/1:3,3:6:47.08:105,0,47
17    56440542    rs2680700    G    T    196.68    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=19.67;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407977    GT:AD:DP:GQ:PL    0/1:3,7:10:63.37:227,0,63
17    56492800    rs3744093    T    C    538.37    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.762;DB;DP=51;Dels=0.0;FS=13.624;HRun=0;HaplotypeScore=0.0;MQ=58.72;MQ0=0;MQRankSum=0.443;QD=10.56;ReadPosRankSum=0.337;SNPEFF_AMINO_ACID_CHANGE=I47V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56492687_56493323;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407977    GT:AD:DP:GQ:PL    0/1:30,21:51:99:568,0,931
17    56540110    rs3803753    G    A    816.78    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=44;Dels=0.0;FS=3.444;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.381;QD=18.56;ReadPosRankSum=-0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323777    GT:AD:DP:GQ:PL    0/1:15,29:44:99:847,0,396
17    56540267    rs3803752    C    T    1131.81    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.958;DB;DP=81;Dels=0.0;FS=0.845;HRun=1;HaplotypeScore=0.6651;MQ=59.72;MQ0=0;MQRankSum=-1.631;QD=13.97;ReadPosRankSum=-2.68;SNPEFF_AMINO_ACID_CHANGE=S373N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56540143_56540664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412540    GT:AD:DP:GQ:PL    0/1:41,40:81:99:1162,0,1367
17    56544280    rs1017089    T    G    1391.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=N229T;SNPEFF_CODON_CHANGE=aAt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56544246_56544340;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSF5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412540    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1425,102,0
17    56569842    rs3034935    T    TGA    5289.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.0;HRun=0;HaplotypeScore=223.3565;IndelType=I;MQ=61.67;MQ0=0;QD=55.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323456    GT:AD:DP:GQ:PL    1/1:0,93:95:99:5290,283,0
17    56580997    rs1860262    T    C    1361.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323456    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1395,102,0
17    56581651    rs4277402    C    G    3558.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.62;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323456    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3558,277,0
17    56583098    rs4793591    A    G    176.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323456    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
17    56584205    rs2302189    A    C    319.66    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.244;DB;DP=27;Dels=0.0;FS=1.792;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.756;QD=11.84;ReadPosRankSum=-0.464;SNPEFF_AMINO_ACID_CHANGE=V297G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56584104_56584232;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323456    GT:AD:DP:GQ:PL    0/1:15,12:27:99:350,0,481
17    56585872    rs3744108    G    C    275.77    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.325;DB;DP=39;Dels=0.0;FS=1.411;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.359;QD=7.07;ReadPosRankSum=1.638;SNPEFF_AMINO_ACID_CHANGE=L170V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56585829_56585925;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323456    GT:AD:DP:GQ:PL    0/1:28,11:39:99:306,0,907
17    56594197    rs3744109    C    T    115.62    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.27;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317256    GT:AD:DP:GQ:PL    0/1:2,4:6:52.36:146,0,52
17    56598213    rs10719315    GA    G    914.80    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=5.908;DB;DP=68;FS=5.27;HRun=4;HaplotypeScore=182.1817;IndelType=D;MQ=59.66;MQ0=0;MQRankSum=-0.905;QD=13.45;ReadPosRankSum=2.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317256    GT:AD:DP:GQ:PL    0/1:36,32:68:99:954,0,1219
17    56598439    rs1057068    T    C    896.76    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.319;DB;DP=53;Dels=0.0;FS=8.043;HRun=0;HaplotypeScore=2.3683;MQ=60.0;MQ0=0;MQRankSum=0.5;QD=16.92;ReadPosRankSum=0.809;SNPEFF_AMINO_ACID_CHANGE=T380;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56598359_56598521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317256    GT:AD:DP:GQ:PL    0/1:21,32:53:99:927,0,662
17    56603978    rs2079703    G    A    70.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=7.02;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317256    GT:AD:DP:GQ:PL    0/1:6,4:10:99:100,0,192
17    56604811    rs740605    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317256    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    56604813    rs2072316    G    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317256    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    56620167    rs17822735    C    T    1848.22    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=4.598;DB;DP=119;Dels=0.0;FS=1.514;HRun=0;HaplotypeScore=2.9498;MQ=59.42;MQ0=0;MQRankSum=1.04;QD=15.53;ReadPosRankSum=0.036;SNPEFF_AMINO_ACID_CHANGE=G461S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56619987_56621683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321691    GT:AD:DP:GQ:PL    0/1:58,61:119:99:1878,0,1542
17    56620501    rs17222523    A    G    595.89    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DB;DP=34;Dels=0.0;FS=3.155;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.39;QD=17.53;ReadPosRankSum=0.142;SNPEFF_AMINO_ACID_CHANGE=H349;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56619987_56621683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf47;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321691    GT:AD:DP:GQ:PL    0/1:13,21:34:99:626,0,390
17    56621286    rs8071623    G    T    734.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.29;MQ0=0;QD=28.25;SNPEFF_AMINO_ACID_CHANGE=P88T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56619987_56621683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf47;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321691    GT:AD:DP:GQ:PL    1/1:1,25:26:63.18:767,63,0
17    56621359    rs6503867    T    C    788.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=29.21;SNPEFF_AMINO_ACID_CHANGE=S63;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56619987_56621683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf47;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321691    GT:AD:DP:GQ:PL    1/1:0,27:27:63.20:822,63,0
17    56636854    rs7225128    T    C    5423.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_AMINO_ACID_CHANGE=E1409;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56636814_56636923;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349033    GT:AD:DP:GQ:PL    1/1:0,161:161:99:5423,403,0
17    56643109    rs34818467    A    G    153.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8295;MQ=57.63;MQ0=0;MQRankSum=1.589;QD=19.13;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=N1321;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56643108_56643185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349033    GT:AD:DP:GQ:PL    0/1:2,6:8:54.83:183,0,55
17    56643238    .    C    T    37.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240361    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:68,0,30
17    56654690    rs1267542    T    C    191.88    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.568;QD=19.19;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240361    GT:AD:DP:GQ:PL    0/1:4,6:10:99:222,0,136
17    56659018    rs6503870    C    T    699.02    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.624;DB;DP=46;Dels=0.0;FS=1.145;HRun=0;HaplotypeScore=0.9578;MQ=59.5;MQ0=0;MQRankSum=0.011;QD=15.2;ReadPosRankSum=2.577;SNPEFF_AMINO_ACID_CHANGE=G1082D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56658972_56659091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389934    GT:AD:DP:GQ:PL    0/1:22,24:46:99:729,0,704
17    56676087    rs118000729    G    C    377.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.03;MQ0=0;MQRankSum=0.769;QD=15.75;ReadPosRankSum=-0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240361    GT:AD:DP:GQ:PL    0/1:12,12:24:99:408,0,351
17    56688511    rs142220238    GT    G    1944.61    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=7.994;DB;DP=144;FS=2.128;HRun=2;HaplotypeScore=388.6558;IndelType=D;MQ=60.07;MQ0=0;MQRankSum=0.981;QD=13.5;ReadPosRankSum=0.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240361    GT:AD:DP:GQ:PL    0/1:81,63:144:99:1984,0,3144
17    56688789    rs1864754    T    G    165.69    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.78;MQ0=0;MQRankSum=0.421;QD=8.72;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240361    GT:AD:DP:GQ:PL    0/1:13,6:19:99:196,0,427
17    56737838    rs17822837    G    A    90.78    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.25;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240361    GT:AD:DP:GQ:PL    0/1:7,4:11:99:121,0,222
17    56769887    rs16943176    G    A    89.83    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=5.61;ReadPosRankSum=1.273;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAD51C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337432    GT:AD:DP:GQ:PL    0/1:12,4:16:99:120,0,437
17    56769979    rs12946397    C    T    285.06    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=28;Dels=0.0;FS=3.78;HRun=1;HaplotypeScore=1.5717;MQ=60.0;MQ0=0;MQRankSum=0.376;QD=10.18;ReadPosRankSum=0.282;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAD51C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461271    GT:AD:DP:GQ:PL    0/1:17,11:28:99:315,0,503
17    56774108    .    T    G    164.37    FSFilter60    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.006;DP=48;Dels=0.0;FS=83.857;HRun=2;HaplotypeScore=3.1179;MQ=51.43;MQ0=0;MQRankSum=-4.108;QD=3.42;ReadPosRankSum=-0.109;SNPEFF_AMINO_ACID_CHANGE=G153;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_56774054_56774220;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RAD51C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337432    GT:AD:DP:GQ:PL    0/1:30,18:48:99:194,0,1001
17    56833457    .    G    GGAACCC    352.54    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DP=24;FS=0.0;HRun=0;HaplotypeScore=217.4491;IndelType=I;MQ=53.63;MQ0=0;MQRankSum=-2.45;QD=14.69;ReadPosRankSum=0.676;SNPEFF_AMINO_ACID_CHANGE=-34EP;SNPEFF_CODON_CHANGE=-/GAACCC;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_17_56833232_56833822;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308249    GT:AD:DP:GQ:PL    0/1:17,6:24:99:392,0,270
17    57050365    rs16943326    C    T    54.41    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.8;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308249    GT:AD:DP:GQ:PL    0/1:5,3:8:84.41:84,0,187
17    57076893    rs4598970    T    A    487.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.5;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.03;MQ0=0;MQRankSum=-0.398;QD=20.33;ReadPosRankSum=0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262294    GT:AD:DP:GQ:PL    0/1:8,16:24:99:518,0,250
17    57089576    rs10630604    C    CCAG    463.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=249.4938;IndelType=I;MQ=45.24;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262294    GT:AD:DP:GQ:PL    1/1:2,12:14:39.12:505,39,0
17    57094617    rs4932691    T    C    1809.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9889;MQ=59.14;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262294    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1843,141,0
17    57134124    rs66885215    G    T    34.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=5.83;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262294    GT:AD:DP:GQ:PL    0/1:3,3:6:64.96:65,0,106
17    57152920    rs6416933    A    G    156.74    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9313;MQ=40.72;MQ0=0;MQRankSum=-0.212;QD=9.8;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262294    GT:AD:DP:GQ:PL    0/1:9,7:16:99:187,0,242
17    57208921    rs8077052    T    G    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330137    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
17    57260227    rs2017276    C    G    642.33    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.516;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.89;MQ0=0;MQRankSum=-0.442;QD=12.12;ReadPosRankSum=0.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262293    GT:AD:DP:GQ:PL    0/1:29,23:53:99:672,0,991
17    57272079    rs2291193    G    A    371.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.395;QD=23.2;ReadPosRankSum=1.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262293    GT:AD:DP:GQ:PL    0/1:4,12:16:99:401,0,114
17    57287454    rs6503905    A    G    354.45    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.425;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.951;QD=12.22;ReadPosRankSum=-0.066;SNPEFF_AMINO_ACID_CHANGE=A14;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_57287371_57289171;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300917    GT:AD:DP:GQ:PL    0/1:13,16:29:99:384,0,403
17    57290383    rs3744383    G    A    1709.18    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.879;DB;DP=94;Dels=0.0;FS=7.049;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.554;QD=18.18;ReadPosRankSum=1.306;SNPEFF_AMINO_ACID_CHANGE=R733;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_57290090_57290962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300917    GT:AD:DP:GQ:PL    0/1:38,56:94:99:1739,0,1221
17    57334668    rs12450435    C    G    309.61    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.992;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.087;QD=17.2;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284116    GT:AD:DP:GQ:PL    0/1:7,11:18:99:340,0,183
17    57465904    rs2286485    C    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312655    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    57466917    rs2290266    A    G    274.14    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=30.46;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312655    GT:AD:DP:GQ:PL    0/1:1,8:9:14.67:304,0,15
17    57474396    rs144737435    GA    G    49.11    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=2.133;DB;DP=14;FS=0.0;HRun=10;HaplotypeScore=45.4323;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=-1.733;QD=3.51;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312655    GT:AD:DP:GQ:PL    0/1:9,5:14:88.14:88,0,252
17    57474667    rs58549129    C    T    80.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.04;ReadPosRankSum=1.231;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312655    GT:AD:DP:GQ:PL    0/1:2,3:5:59.21:110,0,59
17    57683041    rs72525996    T    TA    240.12    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.931;DB;DP=21;FS=3.757;HRun=3;HaplotypeScore=49.7469;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.784;QD=11.43;ReadPosRankSum=-1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251241    GT:AD:DP:GQ:PL    0/1:13,8:21:99:279,0,335
17    57721907    rs113812535    T    TTTTG    285.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=84.3062;IndelType=I;MQ=55.69;MQ0=0;QD=20.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    1/1:9,4:14:15.05:327,15,0
17    57725043    rs8071749    T    G    933.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:967,75,0
17    57725481    rs2136694    G    A    342.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:375,30,0
17    57733479    rs4349212    T    A    574.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:608,51,0
17    57743691    rs9893154    G    A    551.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483176    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:585,45,0
17    57744412    rs7221815    G    A    439.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483176    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:473,36,0
17    57746107    rs2272411    A    G    312.67    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2192;MQ=58.64;MQ0=0;MQRankSum=0.047;QD=10.09;ReadPosRankSum=-0.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466513    GT:AD:DP:GQ:PL    0/1:19,11:31:99:343,0,546
17    57750982    rs8065248    T    C    1614.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1648,123,0
17    57754591    rs28465103    A    G    119.84    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=9.22;ReadPosRankSum=1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    0/1:8,5:13:99:150,0,274
17    57758080    rs3817158    A    C    72.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.53;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:103,0,67
17    57776475    rs4968335    T    C    1564.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.77;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1597,117,0
17    57776511    rs79931696    TGC    T    3039.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.0;HRun=0;HaplotypeScore=422.6767;IndelType=D;MQ=60.41;MQ0=0;QD=41.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    1/1:3,70:73:99:3081,211,0
17    57776597    rs9652857    T    G    1862.88    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.613;DB;DP=150;Dels=0.0;FS=0.635;HRun=1;HaplotypeScore=1.7334;MQ=59.98;MQ0=0;MQRankSum=0.407;QD=12.42;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269122    GT:AD:DP:GQ:PL    0/1:79,71:150:99:1893,0,2552
17    57886125    rs2645487    T    G    648.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VMP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262291    GT:AD:DP:GQ:PL    1/1:0,25:25:54.16:681,54,0
17    57951973    rs2250526    G    A    2086.92    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=0.203;DB;DP=163;Dels=0.0;FS=1.232;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=-1.173;QD=12.8;ReadPosRankSum=-0.092;SNPEFF_AMINO_ACID_CHANGE=Y287;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_57951900_57952064;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325752    GT:AD:DP:GQ:PL    0/1:87,76:163:99:2117,0,2569
17    57958124    rs1292057    C    T    224.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.177;QD=14.98;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325752    GT:AD:DP:GQ:PL    0/1:6,9:15:99:255,0,204
17    57963537    rs1292053    A    G    671.76    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=48;Dels=0.0;FS=11.665;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-0.489;QD=13.99;ReadPosRankSum=-0.535;SNPEFF_AMINO_ACID_CHANGE=M76T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_57963444_57963591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325752    GT:AD:DP:GQ:PL    0/1:22,26:48:99:702,0,657
17    57989860    rs1292034    G    A    33.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=6.73;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS6KB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225577    GT:AD:DP:GQ:PL    0/1:2,3:5:61.07:64,0,61
17    57992145    rs3066247    TATC    T    265.10    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=2.808;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=72.1285;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=-0.453;QD=14.73;ReadPosRankSum=0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS6KB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477179    GT:AD:DP:GQ:PL    0/1:11,7:18:99:304,0,708
17    58011498    rs180524    G    T    634.89    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=3.815;DB;DP=43;Dels=0.0;FS=10.172;HRun=0;HaplotypeScore=0.8667;MQ=58.92;MQ0=0;MQRankSum=-0.592;QD=14.76;ReadPosRankSum=0.516;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS6KB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489824    GT:AD:DP:GQ:PL    0/1:22,21:43:99:665,0,577
17    58012351    rs2531898    G    C    91.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS6KB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489824    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
17    58018142    rs72840315    G    C    137.96    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.3;MQ0=0;MQRankSum=1.2;QD=9.2;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS6KB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225577    GT:AD:DP:GQ:PL    0/1:9,5:15:99:168,0,264
17    58024224    rs25548    C    CAA    480.82    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=30;FS=0.0;HRun=3;HaplotypeScore=111.6654;IndelType=I;MQ=60.36;MQ0=0;MQRankSum=-1.122;QD=16.03;ReadPosRankSum=-2.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS6KB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406116    GT:AD:DP:GQ:PL    0/1:20,10:30:99:520,0,889
17    58024275    rs180515    A    G    168.79    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.63;MQ0=0;MQRankSum=-0.05;QD=9.93;ReadPosRankSum=2.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS6KB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406116    GT:AD:DP:GQ:PL    0/1:11,6:17:99:199,0,371
17    58024324    rs1051424    A    G    54.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.221;QD=6.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPS6KB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475155    GT:AD:DP:GQ:PL    0/1:5,3:8:84.29:84,0,174
17    58031412    rs11368    A    G    382.98    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.169;DB;DP=25;Dels=0.0;FS=4.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.245;QD=15.32;ReadPosRankSum=-1.985;SNPEFF_AMINO_ACID_CHANGE=I389;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_58031406_58031507;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305783    GT:AD:DP:GQ:PL    0/1:12,13:25:99:413,0,439
17    58037374    rs12600680    T    C    480.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.886;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6617;MQ=50.28;MQ0=0;MQRankSum=0.396;QD=14.13;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477207    GT:AD:DP:GQ:PL    0/1:17,17:34:99:510,0,556
17    58037438    rs188842766    A    C    896.23    MQFilter40    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.752;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=35.54;MQ0=8;MQRankSum=-0.73;QD=10.18;ReadPosRankSum=1.904;SNPEFF_AMINO_ACID_CHANGE=L228R;SNPEFF_CODON_CHANGE=cTt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_58037429_58037529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305783    GT:AD:DP:GQ:PL    0/1:45,42:88:99:926,0,780
17    58037690    rs8075105    T    A    112.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=28.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477207    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:145,12,0
17    58040356    rs61752305    G    A    887.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.081;DB;DP=45;Dels=0.0;FS=2.691;HRun=0;HaplotypeScore=0.5784;MQ=59.49;MQ0=0;MQRankSum=-0.475;QD=19.72;ReadPosRankSum=-0.498;SNPEFF_AMINO_ACID_CHANGE=R116W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_58040188_58040645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305783    GT:AD:DP:GQ:PL    0/1:18,27:45:99:917,0,554
17    58040730    rs4968401    T    C    246.02    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.04;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=16.4;ReadPosRankSum=1.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305783    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,235
17    58042126    rs76419616    T    C    31.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNFT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305783    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:61,0,33
17    58085852    .    T    C    103.94    MQFilter40;QDFilter2    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=2.86;DP=121;Dels=0.0;FS=21.439;HRun=2;HaplotypeScore=0.7887;MQ=22.66;MQ0=33;MQRankSum=-0.59;QD=0.86;ReadPosRankSum=-2.534;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005702.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407042    GT:AD:DP:GQ:PL    0/1:100,21:121:99:134,0,1412
17    58086025    .    G    A    85.05    MQFilter40;QDFilter2    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.086;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.08;MQ0=60;MQRankSum=-1.535;QD=0.9;ReadPosRankSum=0.569;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005702.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407042    GT:AD:DP:GQ:PL    0/1:41,53:94:99:115,0,195
17    58149745    rs3744375    G    A    1364.59    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.246;DB;DP=88;Dels=0.0;FS=2.787;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.257;QD=15.51;ReadPosRankSum=0.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEATR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000184956    GT:AD:DP:GQ:PL    0/1:42,46:88:99:1395,0,1380
17    58285542    rs147413172    G    A    174.39    MQFilter40;QDFilter2    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=127;Dels=0.0;FS=16.84;HRun=0;HaplotypeScore=3.6569;MQ=25.14;MQ0=31;MQRankSum=-0.863;QD=1.37;ReadPosRankSum=-0.251;SNPEFF_AMINO_ACID_CHANGE=R935W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_58285420_58285571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300896    GT:AD:DP:GQ:PL    0/1:98,29:127:99:204,0,1616
17    58286977    rs185437051    A    C    309.78    MQFilter40    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.859;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=27.16;MQ0=6;MQRankSum=0.151;QD=13.47;ReadPosRankSum=0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300896    GT:AD:DP:GQ:PL    0/1:10,13:23:99:340,0,130
17    58289316    rs114885215    C    T    339.06    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.926;QD=21.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300896    GT:AD:DP:GQ:PL    0/1:5,11:16:99:369,0,151
17    58508618    rs3760332    T    C    312.52    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=22;Dels=0.0;FS=1.808;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.352;QD=14.21;ReadPosRankSum=-1.088;SNPEFF_AMINO_ACID_CHANGE=T234;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_58508542_58508782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C17orf64;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269127    GT:AD:DP:GQ:PL    0/1:10,12:22:99:343,0,283
17    58786625    rs2643103    A    G    619.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=N87S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_58786580_58786686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390652    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:653,48,0
17    58824567    rs7501675    T    C    4800.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=1;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=G110;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_58824559_58824640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390652    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4801,364,0
17    59478776    rs2270114    G    C    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240328    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    59480289    .    GAT    G    653.68    PASS    AC=2;AF=1.00;AN=2;DP=20;FS=0.0;HRun=0;HaplotypeScore=240.6235;IndelType=D;MQ=41.17;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240328    GT:AD:DP:GQ:PL    1/1:14,6:20:60.15:696,60,0
17    59480313    rs140392356    GAGAGAGAGAGAGAGAGAGA    G    1348.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=377.8506;IndelType=D;MQ=33.76;MQ0=2;MQRankSum=1.542;QD=61.29;ReadPosRankSum=0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240328    GT:AD:DP:GQ:PL    1/1:16,6:20:47.28:1390,47,0
17    59480331    rs59172073    GA    G    544.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=3;HaplotypeScore=185.8739;IndelType=D;MQ=40.69;MQ0=2;QD=27.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240328    GT:AD:DP:GQ:PL    1/1:6,14:18:51.14:587,51,0
17    59485393    rs2240736    C    T    1322.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.33;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424871    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1356,105,0
17    59485555    rs1057987    C    T    435.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=14.51;SNPEFF_AMINO_ACID_CHANGE=S609;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59485415_59486786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240328    GT:AD:DP:GQ:PL    1/1:0,30:30:36.11:468,36,0
17    59489893    rs9907379    T    C    92.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.46;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=L186P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59489112_59490641;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf82;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335108    GT:AD:DP:GQ:PL    1/1:1,5:6:9.03:125,9,0
17    59534987    rs3744447    T    G    528.04    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=46;Dels=0.0;FS=3.483;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=11.48;ReadPosRankSum=-1.903;SNPEFF_AMINO_ACID_CHANGE=A92;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59534898_59534992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000240335    GT:AD:DP:GQ:PL    0/1:24,22:46:99:558,0,764
17    59543090    rs35279830    T    C    661.95    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.353;QD=15.76;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240335    GT:AD:DP:GQ:PL    0/1:20,22:42:99:692,0,676
17    59543591    rs758597    A    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240335    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    59544716    rs1009962    C    T    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.79;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240335    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,113
17    59544810    rs3744442    G    A    94.89    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.4;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.2;QD=6.78;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240335    GT:AD:DP:GQ:PL    0/1:9,5:14:99:125,0,271
17    59556341    rs3785825    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.44;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240335    GT:AD:DP:GQ:PL    0/1:3,3:6:68.61:69,0,74
17    59667953    rs17610181    G    A    1873.61    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.722;DB;DP=133;Dels=0.0;FS=3.228;HRun=0;HaplotypeScore=1.575;MQ=59.83;MQ0=0;MQRankSum=0.592;QD=14.09;ReadPosRankSum=-1.307;SNPEFF_AMINO_ACID_CHANGE=R197*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_59667794_59668563;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000521764    GT:AD:DP:GQ:PL    0/1:69,64:133:99:1904,0,2035
17    59668021    rs61739273    G    C    2366.24    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=2.403;DB;DP=142;Dels=0.0;FS=1.353;HRun=0;HaplotypeScore=1.894;MQ=59.87;MQ0=0;MQRankSum=0.112;QD=16.66;ReadPosRankSum=1.581;SNPEFF_AMINO_ACID_CHANGE=T174R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59667794_59668563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521764    GT:AD:DP:GQ:PL    0/1:66,76:142:99:2396,0,2024
17    59668352    rs17531723    C    T    1085.21    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=2.599;DB;DP=97;Dels=0.0;FS=4.547;HRun=1;HaplotypeScore=1.8928;MQ=60.0;MQ0=0;MQRankSum=-0.294;QD=11.19;ReadPosRankSum=-1.607;SNPEFF_AMINO_ACID_CHANGE=V64I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59667794_59668563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521764    GT:AD:DP:GQ:PL    0/1:58,39:97:99:1115,0,1996
17    59760499    rs1978111    A    G    92.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=15.34;ReadPosRankSum=0.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:122,0,67
17    59760996    rs4986763    A    G    920.28    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.012;DB;DP=72;Dels=0.0;FS=0.91;HRun=0;HaplotypeScore=0.9973;MQ=59.36;MQ0=0;MQRankSum=-0.353;QD=12.78;ReadPosRankSum=-1.647;SNPEFF_AMINO_ACID_CHANGE=Y1137;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59759985_59761501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    0/1:38,34:72:99:950,0,1256
17    59763114    rs4988357    A    T    235.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.208;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.313;QD=14.72;ReadPosRankSum=1.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    0/1:8,8:16:99:265,0,278
17    59763347    rs4986764    A    G    1027.80    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.862;DB;DP=90;Dels=0.0;FS=2.856;HRun=2;HaplotypeScore=0.9973;MQ=59.74;MQ0=0;MQRankSum=0.512;QD=11.42;ReadPosRankSum=-1.22;SNPEFF_AMINO_ACID_CHANGE=S919P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59763197_59763526;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    0/1:52,37:90:99:1058,0,1799
17    59763465    rs4986765    T    C    1549.43    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DB;DP=93;Dels=0.0;FS=1.768;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.143;QD=16.66;ReadPosRankSum=0.206;SNPEFF_AMINO_ACID_CHANGE=E879;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59763197_59763526;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    0/1:39,54:93:99:1579,0,1146
17    59820068    rs9904294    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    59820170    rs12937232    C    A    78.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
17    59857809    rs4988351    C    G    1167.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1201,93,0
17    59876352    rs2191248    C    T    164.92    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=58.63;MQ0=0;MQRankSum=-1.464;QD=9.7;ReadPosRankSum=-2.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    0/1:10,6:17:99:195,0,368
17    59878522    rs11390869    C    CA    578.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=8;HaplotypeScore=47.6427;IndelType=I;MQ=60.96;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    1/1:2,19:21:54.16:621,54,0
17    59924612    rs4988344    G    C    553.66    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.438;DB;DP=45;Dels=0.0;FS=1.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.199;QD=12.3;ReadPosRankSum=-0.948;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259008    GT:AD:DP:GQ:PL    0/1:25,20:45:99:584,0,693
17    59955426    rs606072    T    G    2887.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.72;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=N767H;SNPEFF_CODON_CHANGE=Aac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_59955248_59955449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251334    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2921,217,0
17    59958148    rs76968034    G    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251334    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
17    59958263    rs76301667    T    C    1737.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.58;MQ0=0;QD=39.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251334    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1770,129,0
17    59958635    rs73332565    G    T    443.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251334    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:477,36,0
17    59967387    rs2271576    T    C    759.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251334    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:792,60,0
17    59969232    rs4968457    A    T    76.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251334    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
17    59989126    rs3744434    A    C    1759.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.11;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INTS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251334    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1793,147,0
17    60032650    rs4968463    A    T    61.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=7.69;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    0/1:5,3:8:91.49:91,0,162
17    60040329    rs2278812    C    T    2036.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.85;SNPEFF_AMINO_ACID_CHANGE=T1615;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60040113_60040332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2070,150,0
17    60042254    rs8081805    A    G    72.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
17    60043884    rs671347    G    A    3049.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=D1439;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60043823_60044012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3082,226,0
17    60043929    rs76432344    T    C    716.90    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.311;DB;DP=49;Dels=0.0;FS=1.448;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=1.112;QD=14.63;ReadPosRankSum=0.331;SNPEFF_AMINO_ACID_CHANGE=K1424;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60043823_60044012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    0/1:26,23:49:99:747,0,855
17    60062592    rs16945753    T    C    153.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:186,15,0
17    60070111    rs11375626    G    GT    497.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=42.5068;IndelType=I;MQ=51.13;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    1/1:2,12:14:36.12:540,36,0
17    60111468    rs7218724    A    C    203.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:236,18,0
17    60129875    rs4968467    C    T    2012    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9612;MQ=60.0;MQ0=0;QD=37.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262436    GT:AD:DP:GQ:PL    1/1:0,53:53:99:2045,150,0
17    60217236    rs56068498    A    G    1293.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.51;MQ0=0;QD=28.75;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1327,102,0
17    60217757    rs7221377    A    G    517.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6634;MQ=42.93;MQ0=1;QD=18.49;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,27:28:45.11:551,45,0
17    60217891    rs9900142    C    T    200.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.06;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:233,18,0
17    60308771    rs62070755    C    T    78.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=48.02;MQ0=1;MQRankSum=0.358;QD=13.04;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:57.22:108,0,57
17    60324448    rs12325728    C    T    478.18    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=29;Dels=0.0;FS=3.89;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.306;QD=16.49;ReadPosRankSum=0.066;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,17:29:99:508,0,410
17    60324593    rs11079467    C    T    72.06    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=14.41;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:102,0,30
17    60342432    .    T    C    552.53    MQFilter40    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.87;DP=123;Dels=0.0;FS=7.2;HRun=2;HaplotypeScore=0.9332;MQ=18.53;MQ0=40;MQRankSum=-0.577;QD=4.49;ReadPosRankSum=-1.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC053481.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339120    GT:AD:DP:GQ:PL    0/1:66,57:123:99:583,0,477
17    60342552    .    T    C    536.50    MQFilter40    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DP=123;Dels=0.0;FS=7.955;HRun=0;HaplotypeScore=0.0;MQ=19.99;MQ0=35;MQRankSum=-2.838;QD=4.36;ReadPosRankSum=0.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC053481.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339120    GT:AD:DP:GQ:PL    0/1:50,73:123:99:566,0,525
17    60342600    .    T    G    176.05    MQFilter40;QDFilter2    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.834;DP=101;Dels=0.0;FS=3.424;HRun=2;HaplotypeScore=0.9578;MQ=11.73;MQ0=55;MQRankSum=-1.078;QD=1.74;ReadPosRankSum=-0.798;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC053481.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339120    GT:AD:DP:GQ:PL    0/1:52,48:101:45:206,0,45
17    60342605    .    G    A    180.44    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=11.49;MQ0=54;QD=1.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC053481.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339120    GT:AD:DP:GQ:PL    1/1:19,81:100:24.01:213,24,0
17    60344343    rs149782394    A    G    199.81    MQFilter40    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.6;MQ0=4;MQRankSum=2.637;QD=12.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC053481.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339120    GT:AD:DP:GQ:PL    0/1:5,11:16:13.31:230,0,13
17    60344370    rs146951002    C    T    200.35    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.811;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=23.29;MQ0=7;MQRankSum=1.14;QD=7.42;ReadPosRankSum=-2.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC053481.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339120    GT:AD:DP:GQ:PL    0/1:18,9:27:99:230,0,229
17    60351433    .    C    A    2130.62    MQFilter40    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.773;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3984;MQ=32.74;MQ0=16;MQRankSum=-0.042;QD=8.59;ReadPosRankSum=0.438;SNPEFF_AMINO_ACID_CHANGE=R15L;SNPEFF_CODON_CHANGE=cGa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60351405_60351477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC053481.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339120    GT:AD:DP:GQ:PL    0/1:131,117:248:99:2161,0,2313
17    60352892    .    C    CT    194.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=11;FS=0.0;HRun=0;HaplotypeScore=22.3865;IndelType=I;MQ=48.52;MQ0=0;MQRankSum=-1.408;QD=16.24;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC053481.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339120    GT:AD:DP:GQ:PL    0/1:6,6:11:99:234,0,177
17    60360238    rs10163525    A    G    1332.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.06;MQ0=4;QD=25.63;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1366,126,0
17    60360261    rs62069132    T    C    894.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.09;MQ0=3;QD=24.17;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,37:37:87.14:927,87,0
17    60361602    rs150913339    G    A    196.48    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=34.08;MQ0=7;MQRankSum=-0.578;QD=7.86;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,9:25:99:226,0,292
17    60361652    rs139504127    C    G    272.11    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.422;DB;DP=37;Dels=0.0;FS=3.696;HRun=0;HaplotypeScore=0.0;MQ=41.02;MQ0=5;MQRankSum=-1.65;QD=7.35;ReadPosRankSum=-0.23;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,13:37:99:302,0,564
17    60362802    rs149093464    G    A    132.57    MQFilter40;QDFilter2    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=0.339;DB;DP=92;Dels=0.0;FS=10.818;HRun=0;HaplotypeScore=0.9947;MQ=19.87;MQ0=34;MQRankSum=-0.357;QD=1.44;ReadPosRankSum=-1.627;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:61,31:92:99:163,0,842
17    60363906    .    G    T    202.01    MQFilter40    AC=2;AF=1.00;AN=2;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=19.04;MQ0=16;QD=8.42;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:9,15:24:21.05:235,21,0
17    60363941    rs148555715    G    C    357    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=19.24;MQ0=24;QD=8.71;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:10,31:41:33.10:390,33,0
17    60365695    rs62069136    C    T    34.97    MQFilter40;QDFilter2    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.344;DB;DP=47;Dels=0.0;FS=4.866;HRun=2;HaplotypeScore=1.86;MQ=27.83;MQ0=11;MQRankSum=-0.212;QD=0.74;ReadPosRankSum=0.071;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,11:47:64.96:65,0,675
17    60365992    rs149569922    C    G    390.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.15;MQ0=9;QD=15.6;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,25:25:39.08:423,39,0
17    60366741    rs2668983    C    G    651.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.08;MQ0=0;QD=29.6;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,22:22:54.16:684,54,0
17    60369283    rs143698032    C    T    256.29    MQFilter40    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=2.976;DB;DP=69;Dels=0.0;FS=9.979;HRun=0;HaplotypeScore=0.0;MQ=21.11;MQ0=10;MQRankSum=-2.423;QD=3.71;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,38:69:99:286,0,429
17    60374173    .    CT    C    57.69    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DP=20;FS=0.0;HRun=15;HaplotypeScore=99.3161;IndelType=D;MQ=48.72;MQ0=0;MQRankSum=-0.772;QD=2.4;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,8:20:96.72:97,0,124
17    60464688    rs9909704    C    T    1171.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305286    GT:AD:DP:GQ:PL    1/1:0,36:36:90.26:1205,90,0
17    60469289    rs61764063    T    C    1272.74    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.128;DB;DP=101;Dels=0.0;FS=5.983;HRun=0;HaplotypeScore=0.8941;MQ=59.54;MQ0=0;MQRankSum=0.985;QD=12.6;ReadPosRankSum=-1.447;SNPEFF_AMINO_ACID_CHANGE=H138;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60469183_60469326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450662    GT:AD:DP:GQ:PL    0/1:53,48:101:99:1303,0,1544
17    60472218    rs10853040    T    G    126.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305286    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
17    60472623    rs11079476    C    T    1641.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=38.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518576    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1674,126,0
17    60491298    rs9913294    G    T    478.66    MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.38;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.53;MQ0=1;MQRankSum=0.415;QD=7.04;ReadPosRankSum=-0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305286    GT:AD:DP:GQ:PL    0/1:46,22:68:99:509,0,1080
17    60503477    rs2873889    A    C    86.55    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311506    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
17    60503892    rs2543409    A    G    674.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.29;MQ0=6;QD=22.49;SNPEFF_AMINO_ACID_CHANGE=S145;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60503660_60504015;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311506    GT:AD:DP:GQ:PL    1/1:0,30:30:63.12:708,63,0
17    60503921    rs2319055    T    C    167.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.12;MQ0=12;QD=8.39;SNPEFF_AMINO_ACID_CHANGE=L155P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60503660_60504015;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311506    GT:AD:DP:GQ:PL    1/1:0,20:20:18.05:201,18,0
17    60651884    rs11314763    GT    G    305.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=85.2228;IndelType=D;MQ=58.77;MQ0=0;QD=15.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326270    GT:AD:DP:GQ:PL    1/1:6,14:20:44.80:348,45,0
17    60673853    rs7215672    A    G    348.29    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.262;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=18.33;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326270    GT:AD:DP:GQ:PL    0/1:8,11:19:99:378,0,280
17    60683503    rs8078132    A    G    417.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.7;MQ0=0;QD=26.08;SNPEFF_AMINO_ACID_CHANGE=P592;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60683491_60683602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343388    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:450,36,0
17    60742348    rs2252814    G    T    527.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,17:17:45.11:561,45,0
17    60748926    rs729647    C    T    308.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:341,27,0
17    60758273    rs2245463    G    C    360.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.07;SNPEFF_AMINO_ACID_CHANGE=S862;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60758161_60758321;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:394,33,0
17    60759340    rs2429389    A    G    161.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
17    60759347    rs2460300    A    G    164.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
17    60766224    rs2465430    A    G    125.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_AMINO_ACID_CHANGE=Q25R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60766213_60766321;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446119    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
17    60766733    rs2460289    G    A    89.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    60766786    rs2465428    G    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
17    60766804    rs2465427    C    T    93.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:126,9,0
17    60767015    rs2429387    G    A    133.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.25;SNPEFF_AMINO_ACID_CHANGE=R1156H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60766883_60767121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:166,12,0
17    60767151    rs740698    C    T    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
17    60767461    rs2465426    C    G    332.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:365,27,0
17    60767953    rs72467332    GC    G    1058.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=8;HaplotypeScore=130.241;IndelType=D;MQ=60.23;MQ0=0;QD=25.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303375    GT:AD:DP:GQ:PL    1/1:2,39:41:99:1100,114,0
17    60778932    rs2251393    G    A    1509.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=38.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544856    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1543,117,0
17    60779025    rs2251391    A    G    3219.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.34;MQ0=0;QD=30.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544856    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3253,259,0
17    60813245    rs17683602    T    C    496.05    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=2.119;DB;DP=50;Dels=0.0;FS=2.012;HRun=0;HaplotypeScore=2.8112;MQ=59.16;MQ0=0;MQRankSum=0.04;QD=9.92;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311269    GT:AD:DP:GQ:PL    0/1:31,19:50:99:526,0,1064
17    60813271    rs72842201    A    G    1162.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.492;DB;DP=65;Dels=0.0;FS=1.281;HRun=0;HaplotypeScore=0.9665;MQ=59.36;MQ0=0;MQRankSum=1.262;QD=17.88;ReadPosRankSum=-0.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311269    GT:AD:DP:GQ:PL    0/1:26,39:65:99:1192,0,804
17    60813627    rs2041283    G    A    895.60    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.617;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9423;MQ=59.38;MQ0=0;MQRankSum=-0.52;QD=12.1;ReadPosRankSum=-0.199;SNPEFF_AMINO_ACID_CHANGE=N533;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60813292_60814693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544856    GT:AD:DP:GQ:PL    0/1:45,29:74:99:926,0,1276
17    60814273    rs9891498    A    G    3165.34    PASS    AB=0.498;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.522;DB;DP=219;Dels=0.0;FS=22.298;HRun=0;HaplotypeScore=1.8606;MQ=59.62;MQ0=0;MQRankSum=-0.452;QD=14.45;ReadPosRankSum=0.811;SNPEFF_AMINO_ACID_CHANGE=F318S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_60813292_60814693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544856    GT:AD:DP:GQ:PL    0/1:109,110:219:99:3195,0,3612
17    60821564    rs758519    G    A    220.57    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=22.06;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311269    GT:AD:DP:GQ:PL    0/1:3,7:10:79.96:251,0,80
17    60837034    rs7221784    G    A    158.63    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=22.66;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311269    GT:AD:DP:GQ:PL    0/1:2,5:7:49.35:189,0,49
17    61493196    .    C    CT    388.22    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.456;DP=20;FS=0.0;HRun=1;HaplotypeScore=48.0813;IndelType=I;MQ=60.54;MQ0=0;MQRankSum=1.292;QD=19.41;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TANC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389520    GT:AD:DP:GQ:PL    0/1:9,11:20:99:427,0,291
17    61514626    rs187817197    C    T    325.75    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DB;DP=21;Dels=0.0;FS=3.222;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=15.51;ReadPosRankSum=1.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB561;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360793    GT:AD:DP:GQ:PL    0/1:10,11:21:99:356,0,344
17    61556298    rs4295    C    G    286.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290866    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:320,24,0
17    61556527    rs4296    A    G    353.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290866    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:386,30,0
17    61559923    rs4309    C    T    793.81    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.302;DB;DP=45;Dels=0.0;FS=4.666;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.386;QD=17.64;ReadPosRankSum=-0.554;SNPEFF_AMINO_ACID_CHANGE=P405;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61559827_61560050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290866    GT:AD:DP:GQ:PL    0/1:18,27:45:99:824,0,418
17    61560763    rs4311    T    C    351.57    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.013;DB;DP=24;Dels=0.0;FS=2.395;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=14.65;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290866    GT:AD:DP:GQ:PL    0/1:13,11:24:99:382,0,408
17    61562309    rs4316    C    T    158.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=18;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.328;QD=8.82;ReadPosRankSum=-0.515;SNPEFF_AMINO_ACID_CHANGE=P27;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61562177_61562427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290863    GT:AD:DP:GQ:PL    0/1:12,6:18:99:189,0,402
17    61562553    rs4320    G    A    175.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.679;DB;DP=21;Dels=0.0;FS=2.128;HRun=1;HaplotypeScore=0.734;MQ=57.77;MQ0=0;MQRankSum=-0.261;QD=8.34;ReadPosRankSum=0.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538928    GT:AD:DP:GQ:PL    0/1:14,7:21:99:205,0,443
17    61562774    rs4321    T    C    333.47    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.787;DB;DP=23;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;MQRankSum=0.787;QD=14.5;ReadPosRankSum=-1.417;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538928    GT:AD:DP:GQ:PL    0/1:9,14:23:99:363,0,282
17    61564052    rs4331    A    G    483.91    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.487;DB;DP=30;Dels=0.0;FS=3.646;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.673;QD=16.13;ReadPosRankSum=-0.673;SNPEFF_AMINO_ACID_CHANGE=A157;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61563918_61564076;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290863    GT:AD:DP:GQ:PL    0/1:14,16:30:99:514,0,402
17    61564281    rs4332    T    C    377.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.014;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=20.97;ReadPosRankSum=0.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538928    GT:AD:DP:GQ:PL    0/1:6,12:18:99:407,0,179
17    61564522    rs4333    T    C    107.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=15.29;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538928    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,104
17    61565990    rs4341    G    C    1207.63    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=92;Dels=0.0;FS=7.321;HRun=1;HaplotypeScore=2.4115;MQ=58.74;MQ0=0;MQRankSum=-0.687;QD=13.13;ReadPosRankSum=-0.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290863    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1238,0,1358
17    61565998    rs4342    A    C    1169.62    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.584;DB;DP=96;Dels=0.0;FS=5.38;HRun=4;HaplotypeScore=2.179;MQ=58.05;MQ0=0;MQRankSum=0.056;QD=12.18;ReadPosRankSum=-1.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290863    GT:AD:DP:GQ:PL    0/1:46,50:96:99:1200,0,1329
17    61566031    rs4343    G    A    1603.84    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.563;DB;DP=98;Dels=0.0;FS=3.839;HRun=0;HaplotypeScore=1.367;MQ=57.36;MQ0=0;MQRankSum=-0.489;QD=16.37;ReadPosRankSum=-0.119;SNPEFF_AMINO_ACID_CHANGE=T202;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61566009_61566152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290863    GT:AD:DP:GQ:PL    0/1:42,55:98:99:1634,0,1201
17    61584627    rs4316818    T    C    747.79    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.968;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.096;QD=16.62;ReadPosRankSum=-0.059;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490216    GT:AD:DP:GQ:PL    0/1:21,24:45:99:778,0,605
17    61584720    rs4459610    A    T    470.67    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.403;DB;DP=31;Dels=0.0;FS=2.222;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.18;ReadPosRankSum=-0.771;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490216    GT:AD:DP:GQ:PL    0/1:16,15:31:99:501,0,494
17    61600717    rs71376915    A    G    275.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490216    GT:AD:DP:GQ:PL    1/1:0,8:9:24.07:308,24,0
17    61601945    rs867640    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490216    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    61607708    rs7221517    T    C    254.48    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=27;Dels=0.0;FS=1.617;HRun=0;HaplotypeScore=0.9999;MQ=58.27;MQ0=0;MQRankSum=1.246;QD=9.43;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=H160;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61607698_61607903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314672    GT:AD:DP:GQ:PL    0/1:16,11:27:99:284,0,551
17    61611423    rs7225568    T    C    1198.21    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DB;DP=104;Dels=0.0;FS=8.469;HRun=1;HaplotypeScore=0.0;MQ=47.06;MQ0=0;MQRankSum=1.479;QD=11.52;ReadPosRankSum=2.051;SNPEFF_AMINO_ACID_CHANGE=D284;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61611247_61611672;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314672    GT:AD:DP:GQ:PL    0/1:57,47:104:99:1228,0,1666
17    61615371    rs4465659    T    G    100.79    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.4;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314672    GT:AD:DP:GQ:PL    0/1:3,4:7:96.81:131,0,97
17    61615660    rs35543459    T    TG    290.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=24;FS=2.291;HRun=7;HaplotypeScore=182.2901;IndelType=I;MQ=55.26;MQ0=0;MQRankSum=0.708;QD=12.11;ReadPosRankSum=1.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314672    GT:AD:DP:GQ:PL    0/1:12,12:24:99:330,0,271
17    61621805    rs8070334    T    G    186.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=20.67;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314672    GT:AD:DP:GQ:PL    0/1:3,6:9:92.88:216,0,93
17    61622703    rs12603614    A    G    205.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=14.7;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314672    GT:AD:DP:GQ:PL    0/1:7,7:14:99:236,0,243
17    61623052    rs35819807    C    T    724.05    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.546;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=59.6;MQ0=0;MQRankSum=0.863;QD=15.41;ReadPosRankSum=0.544;SNPEFF_AMINO_ACID_CHANGE=T836M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61622970_61623600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNH6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456941    GT:AD:DP:GQ:PL    0/1:22,25:47:99:754,0,652
17    61660889    rs66502552    CG    C    1849.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=6;HaplotypeScore=199.8071;IndelType=D;MQ=60.84;MQ0=0;QD=30.31;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCAF7;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000310827    GT:AD:DP:GQ:PL    1/1:2,59:61:99:1891,177,0
17    61710010    rs6504171    G    A    534.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361357    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:567,42,0
17    61729882    rs8080211    A    G    595.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361357    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:628,45,0
17    61735056    rs6504173    T    C    146.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361357    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:179,15,0
17    61763031    rs11658329    G    C    796.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361357    GT:AD:DP:GQ:PL    1/1:0,23:23:63.19:829,63,0
17    61766880    rs1877316    C    A    636.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361357    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:669,51,0
17    61769456    rs7211213    T    C    369.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIMD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259006    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:402,30,0
17    61776479    rs1877317    T    C    378.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361357    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:412,33,0
17    61776538    rs3817181    G    C    362.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361357    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:396,33,0
17    61781980    rs66871703    TG    T    251.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=12;HaplotypeScore=96.2796;IndelType=D;MQ=61.34;MQ0=0;QD=15.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245865    GT:AD:DP:GQ:PL    1/1:3,13:16:37.94:294,38,0
17    61783908    rs3817182    A    G    2300.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.63;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245865    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2334,175,0
17    61784963    rs9912557    C    A    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    61791210    rs1043127    T    G    272.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=30.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245865    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:305,24,0
17    61800392    rs61360320    C    T    116.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336174    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
17    61805607    rs2137144    G    A    538.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336174    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:572,42,0
17    61805747    rs4968597    G    A    1373.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.49;MQ0=0;QD=30.52;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_61805694_61805773;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336174    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1406,102,0
17    61829157    rs111349160    A    ATAGTGTT    1345.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=55.9808;IndelType=I;MQ=29.0;MQ0=0;QD=112.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225726    GT:AD:DP:GQ:PL    1/1:4,8:12:36.12:1387,36,0
17    61829989    rs3785572    C    T    1414.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225726    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1448,108,0
17    61838259    rs11654841    G    A    989.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=26.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225726    GT:AD:DP:GQ:PL    1/1:1,37:38:78.23:1022,78,0
17    61842408    rs6504184    A    T    132.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225726    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
17    61843130    rs58269663    G    A    630.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225726    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:663,51,0
17    61864787    rs9747164    T    C    48.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359353    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    61869559    rs11659013    C    G    88.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359353    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
17    61878144    rs2597634    G    A    152    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359353    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:185,15,0
17    61884120    rs2251164    G    A    171.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359353    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
17    61888693    rs2584629    T    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359353    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    61889213    rs72071369    G    GA    4646.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;FS=0.0;HRun=3;HaplotypeScore=235.8032;IndelType=I;MQ=60.26;MQ0=0;QD=41.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359353    GT:AD:DP:GQ:PL    1/1:3,110:113:99:4646,334,0
17    61894076    rs17638873    T    C    83.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.8;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427159    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:113,0,31
17    61900954    rs67527207    CA    C    200.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=15;FS=0.0;HRun=14;HaplotypeScore=96.9861;IndelType=D;MQ=58.36;MQ0=0;MQRankSum=1.24;QD=13.38;ReadPosRankSum=0.496;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389924    GT:AD:DP:GQ:PL    1/1:2,12:15:33.95:243,34,0
17    61901197    rs2727288    T    A    4508.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2611;MQ=59.25;MQ0=0;QD=31.53;SNPEFF_AMINO_ACID_CHANGE=S424C;SNPEFF_CODON_CHANGE=Agc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61901177_61901312;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJ3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427159    GT:AD:DP:GQ:PL    1/1:0,143:143:99:4509,349,0
17    61901439    rs2584627    T    C    3822.17    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.352;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5808;MQ=59.85;MQ0=0;MQRankSum=-0.944;QD=30.82;ReadPosRankSum=-0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389924    GT:AD:DP:GQ:PL    1/1:1,123:124:99:3822,260,0
17    61901641    rs894407    T    C    1856.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.27;MQ0=0;QD=32.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389924    GT:AD:DP:GQ:PL    1/1:1,56:57:99:1889,147,0
17    61901657    rs894406    A    G    1638.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7987;MQ=59.18;MQ0=0;QD=32.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389924    GT:AD:DP:GQ:PL    1/1:0,50:51:99:1672,132,0
17    61901880    rs752621    G    C    749.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427159    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:783,60,0
17    61902822    rs716880    C    G    1831.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427159    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1865,141,0
17    61903445    rs2584625    G    C    3709.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9025;MQ=59.78;MQ0=0;QD=35.67;SNPEFF_AMINO_ACID_CHANGE=Q91E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61903416_61903495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJ3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427159    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3710,271,0
17    61904337    rs3834576    TCCACTTCCAGTTTC    T    1285.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=230.9806;IndelType=D;MQ=46.93;MQ0=0;QD=71.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTSJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427159    GT:AD:DP:GQ:PL    1/1:6,12:18:36.12:1328,36,0
17    61908271    rs968719    C    T    1120.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.3;MQ0=0;QD=31.13;SNPEFF_AMINO_ACID_CHANGE=L211;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61908169_61908295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375812    GT:AD:DP:GQ:PL    1/1:0,36:36:84.28:1154,84,0
17    61908316    rs7220892    G    A    1139.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225742    GT:AD:DP:GQ:PL    1/1:0,34:34:90.26:1173,90,0
17    61909485    rs6919    T    A    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310144    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
17    61912261    rs2665832    C    T    341.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310144    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:374,27,0
17    61912392    rs2665831    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310144    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    61919643    rs28463311    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225742    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
17    61948390    rs2854198    A    G    1756.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.43;MQ0=0;QD=31.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336844    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1790,156,0
17    61949279    rs2854196    C    T    171.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336844    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
17    61958669    rs2006123    G    T    8000.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=230;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6648;MQ=59.72;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332800    GT:AD:DP:GQ:PL    1/1:0,230:230:99:8001,596,0
17    61958964    rs59599680    T    TC    609.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.369;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=58.8934;IndelType=I;MQ=62.65;MQ0=0;MQRankSum=-1.004;QD=30.48;ReadPosRankSum=-0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332800    GT:AD:DP:GQ:PL    1/1:1,19:20:45.26:652,45,0
17    61971404    rs2727350    C    G    1851.94    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=29.33;MQ0=3;QD=29.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316193    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1885,165,0
17    61971635    rs2665811    T    C    33.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.44;MQ0=0;QD=16.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
17    61986027    rs2854152    A    G    2429.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.28;MQ0=2;QD=30.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000259003    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2463,202,0
17    61987405    rs2006122    A    T    3176.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=36.94;SNPEFF_AMINO_ACID_CHANGE=P191;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_61986977_61987686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450719    GT:AD:DP:GQ:PL    1/1:0,85:86:99:3210,235,0
17    61988594    rs138842521    G    T    664.46    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.33;DB;DP=47;Dels=0.0;FS=3.221;HRun=1;HaplotypeScore=1.5774;MQ=52.52;MQ0=0;MQRankSum=-3.56;QD=14.14;ReadPosRankSum=-0.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392824    GT:AD:DP:GQ:PL    0/1:22,25:47:99:694,0,614
17    61996199    rs695    T    A    395.54    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.3;MQ0=0;MQRankSum=-1.819;QD=11.99;ReadPosRankSum=0.594;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323322    GT:AD:DP:GQ:PL    0/1:17,16:33:99:426,0,484
17    61996204    rs6171    T    C    349.93    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.557;DB;DP=29;Dels=0.0;FS=2.251;HRun=1;HaplotypeScore=0.0;MQ=52.07;MQ0=0;MQRankSum=-2.902;QD=12.07;ReadPosRankSum=-0.065;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323322    GT:AD:DP:GQ:PL    0/1:15,14:29:99:380,0,394
17    61996228    rs72149204    AC    A    207.45    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.358;DB;DP=17;FS=0.0;HRun=3;HaplotypeScore=143.6544;IndelType=D;MQ=54.61;MQ0=0;MQRankSum=2.935;QD=12.2;ReadPosRankSum=2.261;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323322    GT:AD:DP:GQ:PL    0/1:9,8:17:99:246,0,338
17    61996255    rs2005172    A    C    466.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.89;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323322    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:500,39,0
17    62006497    rs1051684    A    G    439.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.96;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD79B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006750    GT:AD:DP:GQ:PL    1/1:0,20:20:45.09:472,45,0
17    62006997    rs9893518    T    C    377.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD79B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006750    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:410,33,0
17    62007498    rs2070776    A    G    672.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=C122;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62007434_62007745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD79B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000006750    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:706,51,0
17    62019103    rs56342400    G    T    3112.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_AMINO_ACID_CHANGE=I1513;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62015914_62019353;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,83:84:99:3145,229,0
17    62020348    rs2058194    T    C    3332.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=28.98;SNPEFF_AMINO_ACID_CHANGE=N1376D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62020186_62020456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3332,256,0
17    62020563    rs150461653    CAGAGATGACAG    C    680.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=135.6155;IndelType=D;MQ=54.21;MQ0=0;QD=52.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:4,9:13:27.09:723,27,0
17    62020838    rs8074752    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    62020866    rs8074344    A    G    77.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
17    62022659    rs78912775    A    AG    722.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=79.7493;IndelType=I;MQ=58.05;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:4,17:21:54.18:764,54,0
17    62041068    rs6504191    T    C    889.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.66;SNPEFF_AMINO_ACID_CHANGE=S524G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62041032_62041185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,30:30:72.20:923,72,0
17    62041317    rs2331408    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
17    62041604    rs917558    A    G    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
17    62042078    rs2877373    T    C    246.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
17    62043357    rs2009051    C    G    153.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:186,15,0
17    62045293    rs11418006    C    CA    521.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=41;FS=0.0;HRun=15;HaplotypeScore=332.6416;IndelType=I;MQ=49.56;MQ0=0;MQRankSum=-0.359;QD=12.72;ReadPosRankSum=-0.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:15,21:41:25.01:564,25,0
17    62045555    rs7218917    G    A    1802.47    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.384;DB;DP=125;Dels=0.0;FS=0.686;HRun=0;HaplotypeScore=2.9577;MQ=59.63;MQ0=0;MQRankSum=-0.339;QD=14.42;ReadPosRankSum=0.269;SNPEFF_AMINO_ACID_CHANGE=N288;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62045383_62045715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    0/1:65,60:125:99:1832,0,1937
17    62048467    rs2302236    A    G    140.36    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=11.7;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    0/1:4,8:12:99:170,0,131
17    62049235    rs9892013    A    G    439.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:473,36,0
17    62049738    rs41280108    G    A    200.72    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.764;DB;DP=27;Dels=0.0;FS=3.751;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=-1.028;QD=7.43;ReadPosRankSum=0.501;SNPEFF_AMINO_ACID_CHANGE=R122;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62049712_62049830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435607    GT:AD:DP:GQ:PL    0/1:17,10:27:99:231,0,452
17    62080969    rs4141180    A    C    1789.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=57.83;MQ0=0;QD=33.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539996    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1822,135,0
17    62083929    rs6504194    A    G    209.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf72;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225760    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:242,21,0
17    62121480    rs196912    T    C    302.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.883;QD=14.4;ReadPosRankSum=0.32;SNPEFF_AMINO_ACID_CHANGE=T934;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62120390_62121560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:9,12:21:99:332,0,274
17    62122145    rs196915    A    G    601.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:635,48,0
17    62122677    rs196917    G    A    1086.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=44.62;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,36:36:93.27:1120,93,0
17    62123022    rs196918    C    T    280.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
17    62124998    rs196922    A    G    76.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
17    62125272    rs196923    A    G    3934.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=H825;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62125218_62125345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3935,310,0
17    62125503    rs196924    A    T    350.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:383,30,0
17    62130389    rs10689374    G    GCCT    1418.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=90.7027;IndelType=I;MQ=52.76;MQ0=0;QD=48.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:6,22:29:69.24:1460,69,0
17    62131445    rs169063    A    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    62132309    rs196931    C    T    123.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
17    62141455    rs187826    A    G    1532.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=I326;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62141346_62141511;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1565,120,0
17    62143833    rs107403    T    G    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,70
17    62143892    rs107404    A    G    159.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
17    62144344    rs16947425    C    A    694.74    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.802;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6247;MQ=58.61;MQ0=0;MQRankSum=0.139;QD=14.78;ReadPosRankSum=0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:22,25:47:99:725,0,703
17    62144552    rs28406    A    C    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
17    62145338    rs16947430    C    T    36.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.04;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:3,3:6:66.24:66,0,112
17    62145672    rs196939    A    G    666.21    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.997;DB;DP=61;Dels=0.0;FS=4.012;HRun=1;HaplotypeScore=1.8857;MQ=59.62;MQ0=0;MQRankSum=-1.909;QD=10.92;ReadPosRankSum=-0.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:32,29:61:99:696,0,1089
17    62145728    rs196940    A    G    470.28    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.0;QD=14.7;ReadPosRankSum=-0.335;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:14,18:32:99:500,0,441
17    62156933    rs196947    T    C    719.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:752,54,0
17    62158012    rs196950    T    C    387.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.983;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.89;QD=21.53;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:6,12:18:99:418,0,195
17    62158278    rs196951    T    C    235.31    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.0;QD=14.71;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:7,9:16:99:265,0,227
17    62158300    rs196952    C    T    208.78    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.689;QD=17.4;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:5,7:12:99:239,0,159
17    62158319    rs196953    T    C    99.03    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=14.15;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433197    GT:AD:DP:GQ:PL    0/1:3,4:7:99:129,0,105
17    62232046    rs10546895    AACAG    A    469.63    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=102.8156;IndelType=D;MQ=54.69;MQ0=0;MQRankSum=-2.224;QD=29.35;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258991    GT:AD:DP:GQ:PL    0/1:6,10:16:99:509,0,445
17    62232073    rs4968693    A    T    204.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.304;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.66;MQ0=0;MQRankSum=-0.028;QD=8.17;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258991    GT:AD:DP:GQ:PL    0/1:15,10:25:99:234,0,500
17    62254512    rs3744282    A    G    353.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258991    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:387,30,0
17    62254983    rs1967130    G    A    573.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258991    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:606,45,0
17    62265838    rs67484349    TC    T    998.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=3;HaplotypeScore=81.5411;IndelType=D;MQ=60.31;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258991    GT:AD:DP:GQ:PL    1/1:3,28:31:84.26:1040,84,0
17    62270743    rs4968702    C    G    116.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258991    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:149,12,0
17    62270785    rs2166290    T    C    266.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.49;MQ0=0;QD=29.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258991    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:299,24,0
17    62270823    rs143608816    G    GCTTCCTTC    1255.35    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=131.8657;IndelType=I;MQ=45.9;MQ0=0;MQRankSum=-3.0;QD=66.07;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000258991    GT:AD:DP:GQ:PL    0/1:11,7:19:99:1294,0,484
17    62385918    rs112933893    C    A    230.12    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.99;DB;DP=29;Dels=0.0;FS=1.596;HRun=0;HaplotypeScore=0.0;MQ=50.82;MQ0=1;MQRankSum=-0.312;QD=7.94;ReadPosRankSum=-1.031;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC016489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461109    GT:AD:DP:GQ:PL    0/1:18,11:29:99:260,0,583
17    62386078    rs28670385    T    C    313.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.48;MQ0=2;MQRankSum=-0.058;QD=12.06;ReadPosRankSum=-1.275;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC016489.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461109    GT:AD:DP:GQ:PL    0/1:13,13:26:99:344,0,373
17    62406986    rs45495798    G    A    582.29    PASS    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=3.237;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.561;QD=22.4;ReadPosRankSum=0.925;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,19:26:99:612,0,181
17    62407030    rs45588632    A    G    799.63    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=2.502;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.264;QD=17.38;ReadPosRankSum=0.557;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,30:46:99:830,0,461
17    62463825    .    T    TG    632.93    PASS    AC=2;AF=1.00;AN=2;DP=15;FS=0.0;HRun=2;HaplotypeScore=31.8317;IndelType=I;MQ=59.18;MQ0=0;QD=42.2;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,14:15:45.15:675,45,0
17    62493206    .    G    A    38.49    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=3.21;ReadPosRankSum=-0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225792    GT:AD:DP:GQ:PL    0/1:9,3:12:68.48:68,0,288
17    62496670    rs1140409    A    C    156.30    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=15;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.71;QD=10.42;ReadPosRankSum=0.452;SNPEFF_AMINO_ACID_CHANGE=S410A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62496667_62496891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450599    GT:AD:DP:GQ:PL    0/1:9,6:15:99:186,0,283
17    62541864    .    GA    G    61.09    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.442;DP=30;FS=0.0;HRun=1;HaplotypeScore=324.924;IndelType=D;MQ=43.3;MQ0=0;MQRankSum=-3.532;QD=2.04;ReadPosRankSum=0.906;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMURF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262435    GT:AD:DP:GQ:PL    0/1:18,11:30:99:100,0,199
17    62782689    rs6504255    T    C    1028.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=36.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103810.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400873    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1062,81,0
17    62820746    rs9915020    G    T    169.22    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.12;MQ0=2;MQRankSum=-1.943;QD=9.4;ReadPosRankSum=-1.313;SNPEFF_AMINO_ACID_CHANGE=P98H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62820743_62820990;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103810.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397718    GT:AD:DP:GQ:PL    0/1:8,10:18:99:199,0,251
17    62825154    rs71244261    A    G    312.77    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.232;DB;DP=25;Dels=0.0;FS=3.388;HRun=0;HaplotypeScore=0.8667;MQ=40.85;MQ0=0;MQRankSum=0.232;QD=12.51;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103810.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397718    GT:AD:DP:GQ:PL    0/1:13,12:25:99:343,0,395
17    62855551    rs6504261    A    G    856.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6386;MQ=17.96;MQ0=15;QD=10.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC103810.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436059    GT:AD:DP:GQ:PL    1/1:0,84:85:84.14:889,84,0
17    62892271    rs79445332    A    T    880.82    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=238;DS;Dels=0.0;FS=8.747;HRun=0;HaplotypeScore=2.7199;MQ=21.91;MQ0=10;MQRankSum=-0.378;QD=3.7;ReadPosRankSum=-1.654;SNPEFF_AMINO_ACID_CHANGE=S369T;SNPEFF_CODON_CHANGE=Tct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_62890767_62893778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319651    GT:AD:DP:GQ:PL    0/1:166,71:238:99:911,0,2985
17    62893412    rs62071408    A    G    634.97    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.331;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9768;MQ=41.41;MQ0=5;MQRankSum=-2.866;QD=9.34;ReadPosRankSum=0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400877    GT:AD:DP:GQ:PL    0/1:32,36:68:99:665,0,1092
17    62893457    rs11650755    T    A    107    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.079;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=42.53;MQ0=1;MQRankSum=-0.729;QD=3.57;ReadPosRankSum=-0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400877    GT:AD:DP:GQ:PL    0/1:23,6:30:99:137,0,595
17    62893481    rs71828933    CTT    C    482.33    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=3.132;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=93.678;IndelType=D;MQ=42.01;MQ0=1;MQRankSum=-0.429;QD=18.55;ReadPosRankSum=-0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC37A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400877    GT:AD:DP:GQ:PL    0/1:10,16:22:99:521,0,544
17    62924044    rs6504263    G    A    298.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.27;MQ0=0;QD=27.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:30.06:331,30,0
17    62950679    .    C    A    50.89    PASS    AC=2;AF=1.00;AN=2;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.77;MQ0=0;QD=4.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC037487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413214    GT:AD:DP:GQ:PL    1/1:0,11:11:9:83,9,0
17    62952689    rs3960389    C    G    3714.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=37.9;MQ0=33;QD=25.1;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC037487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413214    GT:AD:DP:GQ:PL    1/1:18,130:148:99:3714,310,0
17    62968829    rs62072157    T    C    207.25    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.764;DB;DP=25;Dels=0.0;FS=3.624;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=8.29;ReadPosRankSum=-0.028;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMZ2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397713    GT:AD:DP:GQ:PL    0/1:16,9:25:99:237,0,585
17    62971597    rs35122942    G    A    95.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=15.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AMZ2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397713    GT:AD:DP:GQ:PL    1/1:1,5:6:12.02:128,12,0
17    63049452    rs1443164    A    G    244.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239138    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:277,21,0
17    63052344    rs12945514    G    T    79.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.29;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239138    GT:AD:DP:GQ:PL    0/1:3,3:6:55.43:110,0,55
17    63052361    rs7216195    C    G    139.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000239138    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:173,15,0
17    63052714    rs3830470    TGCC    T    254.07    PASS    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=2.576;DB;DP=45;FS=5.515;HRun=0;HaplotypeScore=189.0162;IndelType=D;MQ=58.97;MQ0=0;MQRankSum=0.507;QD=5.65;ReadPosRankSum=2.108;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541118    GT:AD:DP:GQ:PL    0/1:37,8:45:99:293,0,1363
17    63133804    rs2585858    A    G    207.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262406    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
17    63532767    rs28684769    C    G    52.51    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=3.75;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307078    GT:AD:DP:GQ:PL    0/1:11,3:14:82.50:83,0,397
17    63532914    rs28760438    A    G    288.69    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.707;DB;DP=41;Dels=0.0;FS=5.352;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.924;QD=7.04;ReadPosRankSum=1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307078    GT:AD:DP:GQ:PL    0/1:27,14:41:99:319,0,924
17    63533768    rs1133683    G    A    40.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=10.23;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=P462;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_63533442_63533953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307078    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:71,0,34
17    63533789    rs9915936    T    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=P455;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_63533442_63533953;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307078    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:72,0,30
17    63534250    rs8078753    T    C    67.72    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=8.47;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307078    GT:AD:DP:GQ:PL    0/1:5,3:8:97.72:98,0,165
17    63534538    rs4541111    C    A    273.66    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=1.044;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=57.66;MQ0=0;MQRankSum=-0.696;QD=27.37;ReadPosRankSum=1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307078    GT:AD:DP:GQ:PL    0/1:1,9:10:6.04:303,0,6
17    63554591    rs2240308    G    A    1273.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_AMINO_ACID_CHANGE=P50S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_63553924_63554854;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307078    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1306,99,0
17    63633073    rs2107654    T    C    177.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317442    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:211,15,0
17    63685174    rs11079582    C    T    535.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317442    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:569,42,0
17    63685473    rs232123    C    T    135.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317442    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
17    63685535    rs974668    C    T    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317442    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
17    63739352    rs12948946    A    G    672.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.141;DB;DP=65;Dels=0.0;FS=2.293;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.301;QD=10.35;ReadPosRankSum=-0.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317442    GT:AD:DP:GQ:PL    0/1:39,26:65:99:702,0,1240
17    63898157    rs2241008    C    T    164.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:197,15,0
17    64001925    rs1015098    G    A    315.60    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=35;Dels=0.0;FS=2.093;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.085;QD=9.02;ReadPosRankSum=-0.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:22,13:35:99:346,0,775
17    64023624    rs17704679    T    C    154.75    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.724;DB;DP=23;Dels=0.0;FS=1.744;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.48;QD=6.73;ReadPosRankSum=-1.354;SNPEFF_AMINO_ACID_CHANGE=K186E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_64023619_64023678;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541355    GT:AD:DP:GQ:PL    0/1:14,9:23:99:185,0,455
17    64023642    rs11079628    A    G    405.59    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.29;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.807;QD=17.63;ReadPosRankSum=1.388;SNPEFF_AMINO_ACID_CHANGE=L180;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_64023619_64023678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541355    GT:AD:DP:GQ:PL    0/1:8,15:23:99:436,0,202
17    64023781    rs11079629    C    T    161.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
17    64024248    rs62063399    C    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=70.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    64024303    rs4277386    G    A    99.73    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=61.53;MQ0=0;MQRankSum=0.937;QD=14.25;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:3,4:7:82.79:130,0,83
17    64024340    rs9901053    T    C    301.41    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.352;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.44;MQ0=0;MQRankSum=1.022;QD=13.7;ReadPosRankSum=-0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:10,12:22:99:331,0,339
17    64024375    rs9899985    G    A    683.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.307;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=58.99;MQ0=0;MQRankSum=-1.538;QD=14.85;ReadPosRankSum=0.703;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:23,23:46:99:713,0,779
17    64025068    rs11651749    C    A    33.24    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.38;QD=4.75;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:5,2:7:63.23:63,0,154
17    64025069    rs11079632    G    A    113.84    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=16.26;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:2,5:7:62.59:144,0,63
17    64025093    rs11651820    G    A    146.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9648;MQ=57.66;MQ0=0;MQRankSum=0.729;QD=14.65;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,136
17    64025331    rs11652766    A    G    713.12    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.353;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.729;QD=13.71;ReadPosRankSum=-0.539;SNPEFF_AMINO_ACID_CHANGE=N106;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_64025241_64025370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541355    GT:AD:DP:GQ:PL    0/1:28,24:52:99:743,0,893
17    64025435    rs60700240    T    TTAATCA    637.25    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=83.5938;IndelType=I;MQ=50.27;MQ0=0;MQRankSum=-3.464;QD=35.4;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:12,6:18:99:676,0,630
17    64025825    rs67867456    TAAAC    T    210.78    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=143.0712;IndelType=D;MQ=29.0;MQ0=0;MQRankSum=0.742;QD=30.11;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:2,5:7:17.70:250,0,18
17    64025833    rs59076951    C    T    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:0,9:9:12.03:134,12,0
17    64025865    rs67876796    TTTAGA    T    857.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=229.9092;IndelType=D;MQ=29.0;MQ0=0;QD=57.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:1,14:15:45.15:900,45,0
17    64025926    rs9908964    G    T    1386.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.9;MQ0=0;MQRankSum=1.288;QD=35.55;ReadPosRankSum=-1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:1,38:39:99:1419,111,0
17    64049733    rs1401049    A    G    234.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.002;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.618;QD=13.05;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:9,9:18:99:265,0,307
17    64050007    rs11079637    G    A    881.91    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.244;DB;DP=61;Dels=0.0;FS=1.209;HRun=3;HaplotypeScore=1.8188;MQ=59.16;MQ0=0;MQRankSum=-1.337;QD=14.46;ReadPosRankSum=-0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:28,33:61:99:912,0,873
17    64050062    rs1401048    G    A    455.51    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.988;MQ=60.0;MQ0=0;MQRankSum=-0.659;QD=13.01;ReadPosRankSum=-0.069;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:19,16:35:99:485,0,699
17    64050123    rs8068229    C    T    164.71    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=14.97;ReadPosRankSum=1.769;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:4,7:11:99:195,0,132
17    64050156    rs7212467    T    C    198.71    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=28.39;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:1,6:7:21.16:229,0,21
17    64062830    rs908713    T    A    749.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:783,63,0
17    64066163    rs56728223    T    C    298.26    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.107;QD=24.86;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    0/1:2,10:12:49.18:328,0,49
17    64092154    rs9903594    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    64173170    rs2159557    A    G    1583    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8937;MQ=59.59;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392769    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1616,123,0
17    64208230    rs6933    G    A    1443.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.38;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205948    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1477,108,0
17    64208396    rs1558359    G    A    412.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205948    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:445,33,0
17    64210403    rs1971682    G    C    218.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205948    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
17    64210528    rs1544556    G    A    1123.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205948    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1156,84,0
17    64213104    rs2041398    A    G    1347.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205948    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1380,102,0
17    64216644    rs3744317    G    A    1107.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205948    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1140,84,0
17    64299360    rs12452657    C    T    124.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413366    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
17    64728525    rs8074909    C    T    119.19    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.731;QD=23.84;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284384    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:149,0,27
17    64731402    rs6504452    A    G    31.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.91;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284384    GT:AD:DP:GQ:PL    0/1:2,2:4:61.63:62,0,71
17    64735035    rs11393375    C    CT    331.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=6;HaplotypeScore=29.128;IndelType=I;MQ=60.83;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284384    GT:AD:DP:GQ:PL    1/1:3,10:13:30.10:374,30,0
17    64737717    rs3803821    T    A    290.64    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.016;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.646;QD=12.64;ReadPosRankSum=-1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284384    GT:AD:DP:GQ:PL    0/1:12,11:23:99:321,0,413
17    64738635    rs61761552    G    A    237.85    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=13.99;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284384    GT:AD:DP:GQ:PL    0/1:9,8:17:99:268,0,316
17    64738988    rs9894851    G    A    194.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284384    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
17    64783081    rs6504459    G    A    1532.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=V568I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_64782985_64783092;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413366    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1566,117,0
17    64785191    rs11420909    T    TG    670.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=41.0731;IndelType=I;MQ=61.34;MQ0=0;QD=41.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413366    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:713,48,0
17    64873552    rs11652480    G    A    356.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DB;DP=32;Dels=0.0;FS=1.471;HRun=0;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=0.942;QD=11.15;ReadPosRankSum=-0.666;SNPEFF_AMINO_ACID_CHANGE=L34;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_64873451_64873646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000169565    GT:AD:DP:GQ:PL    0/1:16,16:32:99:387,0,394
17    64875035    rs2286676    C    T    325.82    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.297;QD=14.81;ReadPosRankSum=0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169565    GT:AD:DP:GQ:PL    0/1:12,10:22:99:356,0,379
17    64876551    rs5821499    A    AC    369.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=23.9661;IndelType=I;MQ=60.98;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169565    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:412,30,0
17    64876953    rs141748550    G    T    410.63    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.692;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=16.43;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169565    GT:AD:DP:GQ:PL    0/1:12,13:25:99:441,0,425
17    64881075    rs2286678    A    G    436.64    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=37;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.93;QD=11.8;ReadPosRankSum=2.081;SNPEFF_AMINO_ACID_CHANGE=P289;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_64880633_64881099;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000169565    GT:AD:DP:GQ:PL    0/1:19,18:37:99:467,0,616
17    65026515    rs2240648    A    G    776.66    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.709;DB;DP=65;Dels=0.0;FS=2.109;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.441;QD=11.95;ReadPosRankSum=-1.138;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262138    GT:AD:DP:GQ:PL    0/1:30,35:65:99:807,0,939
17    65027740    rs740555    G    C    255.55    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.607;DB;DP=40;Dels=0.0;FS=1.481;HRun=0;HaplotypeScore=3.3381;MQ=59.42;MQ0=0;MQRankSum=1.534;QD=6.39;ReadPosRankSum=-1.505;SNPEFF_AMINO_ACID_CHANGE=G65R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_65027554_65028198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005544.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375684    GT:AD:DP:GQ:PL    0/1:26,14:40:99:286,0,681
17    65050305    rs2270084    T    C    343.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;QD=24.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226021    GT:AD:DP:GQ:PL    1/1:0,14:14:36.06:377,36,0
17    65050306    rs71380001    G    A    150.43    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.74;ReadPosRankSum=0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226021    GT:AD:DP:GQ:PL    0/1:6,8:14:99:180,0,196
17    65051104    rs11322532    CA    C    658.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=61.4396;IndelType=D;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226021    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:700,54,0
17    65051180    rs2363844    A    G    1289.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226021    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1323,105,0
17    65074354    rs35467630    G    GA    612.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.47;DB;DP=24;FS=3.51;HRun=9;HaplotypeScore=85.6043;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=-0.47;QD=25.54;ReadPosRankSum=-0.261;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:2,21:24:19.91:655,20,0
17    65104666    rs11657929    T    G    1088.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.33;MQ0=0;QD=29.41;SNPEFF_AMINO_ACID_CHANGE=R1556;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_65104608_65104842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:0,37:37:96.20:1121,96,0
17    65104743    rs11653020    G    A    1302.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=58.18;MQ0=0;QD=31.76;SNPEFF_AMINO_ACID_CHANGE=A1530V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_65104608_65104842;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1335,102,0
17    65116491    rs12709454    T    C    503.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:536,39,0
17    65119931    .    C    CTGTGTGTG    754.63    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=0;HaplotypeScore=74.2868;IndelType=I;MQ=44.99;MQ0=0;QD=68.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:4,5:11:27.08:797,27,0
17    65124553    rs9898605    G    A    85.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
17    65142070    rs34812114    G    GA    278.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=10;HaplotypeScore=43.6844;IndelType=I;MQ=56.35;MQ0=0;QD=21.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:3,10:13:30.08:320,30,0
17    65145874    rs3213754    A    G    680.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:714,54,0
17    65156919    rs1035176    G    C    299.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:333,24,0
17    65157277    rs2287127    A    T    267.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:300,24,0
17    65211876    rs10512514    A    C    217.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HELZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358691    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
17    65340620    rs4791292    C    A    99.17    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.02;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356126    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,174
17    65343725    rs17726709    G    C    68.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=8.53;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356126    GT:AD:DP:GQ:PL    0/1:4,4:8:98.21:98,0,145
17    65344449    rs56247409    G    A    87.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356126    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
17    65528801    rs2304278    C    T    174.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=29.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299954    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:208,18,0
17    65529179    rs35966843    C    T    162.86    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=13;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=12.53;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299954    GT:AD:DP:GQ:PL    0/1:7,6:13:99:193,0,210
17    65548540    rs2916133    G    T    1075.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299954    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1108,84,0
17    65574283    rs2570035    A    G    4739.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=59.84;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299954    GT:AD:DP:GQ:PL    1/1:0,143:143:99:4739,358,0
17    65574437    rs8082003    A    G    1884.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299954    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1918,144,0
17    65574490    rs76710401    G    C    300.96    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.81;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=0.176;QD=14.33;ReadPosRankSum=1.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299954    GT:AD:DP:GQ:PL    0/1:10,11:21:99:331,0,307
17    65665608    rs36013607    AT    A    125.65    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=2.49;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=51.8196;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.939;QD=5.98;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299954    GT:AD:DP:GQ:PL    0/1:11,10:21:99:165,0,263
17    65689053    rs137936250    G    GT    668.01    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.83;DB;DP=77;FS=0.0;HRun=9;HaplotypeScore=238.2161;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=-0.363;QD=8.68;ReadPosRankSum=1.193;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299954    GT:AD:DP:GQ:PL    0/1:49,25:77:99:707,0,633
17    65714232    rs3760224    C    G    282.12    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.676;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6828;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=7.62;ReadPosRankSum=-1.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    0/1:23,14:37:99:312,0,618
17    65714359    rs3760226    G    A    260.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
17    65718798    rs5821454    TA    T    552.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=12;HaplotypeScore=139.9162;IndelType=D;MQ=60.65;MQ0=0;QD=17.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:6,25:31:77.54:594,78,0
17    65718839    rs999043    C    T    645.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.6;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,18:18:54.16:679,54,0
17    65718874    rs999042    C    A    373.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.07;MQ0=0;QD=37.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:406,30,0
17    65718934    rs999041    C    T    132.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
17    65720346    rs11654692    A    G    422.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.207;DB;DP=30;Dels=0.0;FS=4.576;HRun=0;HaplotypeScore=0.0;MQ=58.6;MQ0=0;MQRankSum=0.29;QD=14.07;ReadPosRankSum=-0.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    0/1:15,15:30:99:452,0,489
17    65722849    rs3744268    G    A    175.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
17    65730404    rs4790943    G    A    288.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
17    65731793    rs6504527    A    G    65.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=21.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:97,9,0
17    65732093    rs3760227    A    G    626.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.41;DB;DP=50;Dels=0.0;FS=1.229;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.59;QD=12.54;ReadPosRankSum=-0.41;SNPEFF_AMINO_ACID_CHANGE=S154;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_65732016_65732139;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535137    GT:AD:DP:GQ:PL    0/1:25,25:50:99:657,0,837
17    65732959    rs7223990    A    G    295.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
17    65733119    rs3752647    T    C    440.56    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.847;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.326;QD=20.98;ReadPosRankSum=0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    0/1:8,13:21:99:471,0,255
17    65734514    rs1542610    A    G    1178.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,33:33:90.30:1211,90,0
17    65735563    rs2286916    G    A    185.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=16.9;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    0/1:5,6:11:99:216,0,148
17    65739626    rs138167117    C    T    626.08    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.64;DB;DP=109;Dels=0.0;FS=0.729;HRun=0;HaplotypeScore=0.734;MQ=59.79;MQ0=0;MQRankSum=0.494;QD=5.74;ReadPosRankSum=0.798;SNPEFF_AMINO_ACID_CHANGE=A474V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_65739595_65739702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535137    GT:AD:DP:GQ:PL    0/1:58,50:109:99:656,0,1763
17    65739627    rs10127    A    G    666.24    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.434;DB;DP=109;Dels=0.0;FS=1.528;HRun=0;HaplotypeScore=0.734;MQ=59.79;MQ0=0;MQRankSum=-0.336;QD=6.11;ReadPosRankSum=0.958;SNPEFF_AMINO_ACID_CHANGE=A474;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_65739595_65739702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535137    GT:AD:DP:GQ:PL    0/1:58,51:109:99:696,0,1810
17    65739789    rs2286917    A    G    2045.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2079,153,0
17    65739797    rs2286918    A    T    2133.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253247    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2167,160,0
17    65862379    rs4791044    T    C    81.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
17    65882457    rs8072824    T    A    711.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:745,57,0
17    65909472    rs74276829    T    TGG    369.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=40.9695;IndelType=I;MQ=40.36;MQ0=0;QD=52.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:411,21,0
17    65925339    rs147119383    A    G    106.24    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=9.66;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    0/1:7,4:11:99:136,0,247
17    65940605    rs6504554    C    G    212.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
17    65955651    rs8068790    T    C    3803.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=35.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3803,274,0
17    65959300    rs6504560    A    G    153.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=19.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:186,15,0
17    65962538    rs5821446    A    AT    174.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=11.0051;IndelType=I;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:216,15,0
17    65971739    rs6504563    T    C    168.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306378    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
17    65988049    rs9891146    T    C    1844.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=I92V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_65987218_65988219;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449250    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1877,138,0
17    65989048    rs28368756    T    C    767.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=30.7;SNPEFF_AMINO_ACID_CHANGE=E72G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_65989017_65989351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334461    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:800,66,0
17    66036943    rs35884438    T    TG    772.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=6;HaplotypeScore=108.4526;IndelType=I;MQ=61.22;MQ0=0;QD=25.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467104    GT:AD:DP:GQ:PL    1/1:7,23:30:69.04:814,69,0
17    66038181    rs62084696    C    G    1791.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPTF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467104    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1824,135,0
17    66038863    rs62084698    C    T    336.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.41;MQ0=0;QD=28.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330459    GT:AD:DP:GQ:PL    1/1:0,11:12:33.09:369,33,0
17    66038979    rs147134376    CA    C    279.03    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.351;DB;DP=69;FS=8.751;HRun=19;HaplotypeScore=473.2288;IndelType=D;MQ=52.05;MQ0=0;MQRankSum=0.918;QD=4.04;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330459    GT:AD:DP:GQ:PL    0/1:18,33:69:5.58:317,0,6
17    66039350    rs4638    A    G    6546.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.2581;MQ=59.48;MQ0=0;QD=36.99;SNPEFF_AMINO_ACID_CHANGE=V267;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_66039216_66039479;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330459    GT:AD:DP:GQ:PL    1/1:0,176:177:99:6546,505,0
17    66039618    rs35594666    G    A    750.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330459    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:784,57,0
17    66039668    rs35453056    A    G    346.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPNA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330459    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:379,30,0
17    66246416    rs3213690    A    G    1399.33    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.218;DB;DP=100;Dels=0.0;FS=2.635;HRun=0;HaplotypeScore=2.4923;MQ=59.31;MQ0=0;MQRankSum=-2.77;QD=13.99;ReadPosRankSum=0.847;SNPEFF_AMINO_ACID_CHANGE=N30D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_66246329_66246611;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMZ2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359783    GT:AD:DP:GQ:PL    0/1:54,46:100:99:1429,0,1736
17    66253095    rs7105    T    A    376.28    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.393;DB;DP=33;Dels=0.0;FS=3.267;HRun=0;HaplotypeScore=0.8667;MQ=58.29;MQ0=0;MQRankSum=0.243;QD=11.4;ReadPosRankSum=-0.056;SNPEFF_AMINO_ACID_CHANGE=A298;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_66252955_66253305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMZ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359783    GT:AD:DP:GQ:PL    0/1:21,12:33:99:406,0,700
17    66364749    rs1558877    T    C    773.63    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.426;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.03;MQ0=0;MQRankSum=1.403;QD=10.74;ReadPosRankSum=1.31;SNPEFF_AMINO_ACID_CHANGE=P154;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_66364689_66364885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448504    GT:AD:DP:GQ:PL    0/1:42,30:72:99:804,0,1294
17    66420766    rs3785605    T    C    80.98    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=11.57;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448504    GT:AD:DP:GQ:PL    0/1:3,4:7:99:111,0,101
17    66425995    rs3785610    T    G    43.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=7.25;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262139    GT:AD:DP:GQ:PL    0/1:3,3:6:73.52:74,0,102
17    66425997    rs3785611    C    T    47.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=7.9;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262139    GT:AD:DP:GQ:PL    0/1:3,3:6:77.40:77,0,106
17    66432355    rs2287302    C    G    186.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=20.71;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262139    GT:AD:DP:GQ:PL    0/1:3,6:9:84.23:216,0,84
17    66447073    rs2302783    T    C    282.86    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.724;DB;DP=23;Dels=0.0;FS=6.628;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.215;QD=12.3;ReadPosRankSum=0.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262139    GT:AD:DP:GQ:PL    0/1:12,11:23:99:313,0,347
17    66449122    rs883541    G    A    470.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.323;DB;DP=34;Dels=0.0;FS=3.329;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=13.85;ReadPosRankSum=0.666;SNPEFF_AMINO_ACID_CHANGE=T31I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_66449051_66449133;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIPI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262139    GT:AD:DP:GQ:PL    0/1:17,17:34:99:501,0,485
17    66519857    rs35723852    C    CT    523.59    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.399;DB;DP=32;FS=1.569;HRun=4;HaplotypeScore=76.6053;IndelType=I;MQ=60.34;MQ0=0;MQRankSum=-0.767;QD=16.36;ReadPosRankSum=-0.899;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358598    GT:AD:DP:GQ:PL    0/1:16,16:32:99:563,0,354
17    66524987    rs2302230    G    A    1119.22    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.276;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-1.68;QD=14.73;ReadPosRankSum=-0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358598    GT:AD:DP:GQ:PL    0/1:40,36:76:99:1149,0,1166
17    66526027    rs2302231    G    T    428.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.402;DB;DP=30;Dels=0.0;FS=1.585;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.572;QD=14.28;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKAR1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358598    GT:AD:DP:GQ:PL    0/1:12,18:30:99:458,0,400
17    66526316    rs2302233    A    T    369.93    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.458;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.284;QD=12.76;ReadPosRankSum=-1.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226094    GT:AD:DP:GQ:PL    0/1:15,14:29:99:400,0,512
17    66533655    rs2907373    A    G    260.31    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.618;DB;DP=37;Dels=0.0;FS=1.302;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.503;QD=7.04;ReadPosRankSum=-1.119;SNPEFF_AMINO_ACID_CHANGE=L134S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_66533265_66533882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375556    GT:AD:DP:GQ:PL    0/1:25,12:37:99:290,0,780
17    66536212    rs3214285    CAG    C    132.79    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=59.5809;IndelType=D;MQ=54.65;MQ0=0;MQRankSum=0.421;QD=14.75;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226094    GT:AD:DP:GQ:PL    0/1:4,5:9:99:172,0,183
17    66536219    rs2286558    G    C    145.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.684;QD=16.16;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226094    GT:AD:DP:GQ:PL    0/1:3,6:9:96.60:175,0,97
17    66550887    rs35495396    G    A    131.75    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.555;QD=8.78;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM20A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000226094    GT:AD:DP:GQ:PL    0/1:8,7:15:99:162,0,252
17    66872802    rs1481    G    C    2256.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.7;MQ0=0;QD=29.31;SNPEFF_AMINO_ACID_CHANGE=P1374;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_66872769_66872844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269080    GT:AD:DP:GQ:PL    1/1:0,76:77:99:2290,184,0
17    66873743    rs8068987    G    A    1598.64    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=2.042;DB;DP=92;Dels=0.0;FS=7.413;HRun=0;HaplotypeScore=0.734;MQ=59.59;MQ0=0;MQRankSum=-0.139;QD=17.38;ReadPosRankSum=0.582;SNPEFF_AMINO_ACID_CHANGE=P1332;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_66873660_66873820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269080    GT:AD:DP:GQ:PL    0/1:39,53:92:99:1629,0,992
17    66880081    rs8080098    A    G    631.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541225    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:665,51,0
17    66880371    rs1470293    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    66883719    rs6501839    A    G    1597.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.51;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269080    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1630,123,0
17    66890117    rs4148000    C    G    132.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542396    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
17    66899261    rs7211979    A    G    33.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269080    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
17    66899290    rs4147997    G    A    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269080    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,110
17    66933003    rs4147967    C    T    485.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269080    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:519,39,0
17    66972557    rs113897544    A    G    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340001    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
17    66985340    rs111397165    C    T    145.43    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.938;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.27;ReadPosRankSum=0.784;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460872    GT:AD:DP:GQ:PL    0/1:14,6:20:99:175,0,473
17    66986162    rs9902444    A    C    1131.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9721;MQ=59.39;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340001    GT:AD:DP:GQ:PL    1/1:1,37:38:93.29:1164,93,0
17    67031369    rs1860448    T    C    2228.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340001    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2261,169,0
17    67031457    rs1860447    C    T    5618.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5577;MQ=59.59;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=R336H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67031387_67031572;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453985    GT:AD:DP:GQ:PL    1/1:0,168:168:99:5618,409,0
17    67041060    rs10512523    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=65.19;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340001    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    67041608    rs9789083    T    C    205.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7122;MQ=60.0;MQ0=0;QD=20.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340001    GT:AD:DP:GQ:PL    1/1:0,10:10:24.03:239,24,0
17    67047047    rs35873471    AT    A    203.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=14.723;IndelType=D;MQ=61.78;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340001    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
17    67075072    rs2302290    G    A    270.18    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DB;DP=22;Dels=0.0;FS=3.067;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=12.28;ReadPosRankSum=1.068;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:13,9:22:99:300,0,442
17    67075294    rs2302289    C    T    1074.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=38.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    1/1:0,28:28:84.27:1108,84,0
17    67077473    rs8082114    C    T    152.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:185,15,0
17    67078806    rs12942011    A    G    110.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.33;MQ0=0;MQRankSum=0.66;QD=7.93;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:7,7:14:99:141,0,256
17    67080770    rs11657954    A    G    116.20    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-0.493;QD=6.46;ReadPosRankSum=0.789;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:13,5:18:99:146,0,471
17    67080811    rs111578492    CT    C    39.87    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;FS=0.0;HRun=14;HaplotypeScore=33.8476;IndelType=D;MQ=57.9;MQ0=0;MQRankSum=-0.322;QD=4.43;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:4,5:9:59.71:79,0,60
17    67081830    rs2302134    T    C    441.63    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.808;DB;DP=37;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=0.0;MQ=55.61;MQ0=0;MQRankSum=0.107;QD=11.94;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=N1322S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67081766_67081857;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:20,17:37:99:472,0,530
17    67082627    rs68086602    AATAT    A    243.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=46.9099;IndelType=D;MQ=58.46;MQ0=0;MQRankSum=0.742;QD=30.48;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    1/1:1,6:8:8.38:285,8,0
17    67082962    rs740516    C    G    337.16    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=20;Dels=0.0;FS=3.468;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=16.86;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:9,11:20:99:367,0,309
17    67083802    rs758255    A    G    247.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
17    67096772    rs10713615    GA    G    95.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=9;HaplotypeScore=12.0871;IndelType=D;MQ=60.0;MQ0=0;QD=19.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:137,15,0
17    67097212    rs1468514    T    C    123.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
17    67099129    rs2364315    A    G    316.14    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.276;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.373;QD=8.54;ReadPosRankSum=0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:23,14:37:99:346,0,700
17    67101718    rs7212506    C    T    1621.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=36.86;SNPEFF_AMINO_ACID_CHANGE=M875I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67101603_67101769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1655,120,0
17    67109662    rs11659091    G    A    713.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.999;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=0.923;QD=15.52;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:23,23:46:99:744,0,768
17    67109673    rs7504026    A    G    605.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.96;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=0.364;QD=13.77;ReadPosRankSum=-0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:22,22:44:99:636,0,706
17    67109894    rs9282552    C    T    346.82    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.539;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.031;QD=15.08;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:12,11:23:99:377,0,346
17    67119593    rs4603621    G    C    212.49    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.16;MQ0=0;MQRankSum=0.627;QD=14.17;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:7,8:15:99:242,0,169
17    67125840    rs4968839    C    T    994.02    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=3.257;DB;DP=53;Dels=0.0;FS=4.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=18.76;ReadPosRankSum=-0.206;SNPEFF_AMINO_ACID_CHANGE=V282I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67125751_67125892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:23,30:53:99:1024,0,614
17    67133352    rs2041171    T    G    288.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.062;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.709;QD=19.24;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284425    GT:AD:DP:GQ:PL    0/1:6,9:15:99:319,0,203
17    67144884    rs1974578    G    T    403.73    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.327;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.371;QD=13.92;ReadPosRankSum=-0.153;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519732    GT:AD:DP:GQ:PL    0/1:15,14:29:99:434,0,514
17    67145290    rs1014235    C    T    700.68    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.504;DB;DP=35;Dels=0.0;FS=4.202;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.712;QD=20.02;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:12,23:35:99:731,0,351
17    67147962    rs72852598    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    67150176    rs2886232    T    C    1566.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1599,126,0
17    67152893    rs10605889    CAAAT    C    241.61    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=62.912;IndelType=D;MQ=53.23;MQ0=0;MQRankSum=0.143;QD=21.96;ReadPosRankSum=-2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:5,6:11:99:281,0,347
17    67160186    rs7208382    T    C    759.98    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=2.216;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.751;QD=18.54;ReadPosRankSum=1.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:17,23:40:99:790,0,552
17    67170736    rs740520    A    G    1743.55    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.157;DB;DP=179;Dels=0.0;FS=1.989;HRun=0;HaplotypeScore=5.3032;MQ=59.64;MQ0=0;MQRankSum=0.921;QD=9.74;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:100,79:179:99:1774,0,3222
17    67171748    rs12940557    A    G    120.79    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=10.07;ReadPosRankSum=-1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:7,5:12:99:151,0,259
17    67178316    rs4968849    A    G    282.73    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DB;DP=32;Dels=0.0;FS=1.419;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.052;QD=8.84;ReadPosRankSum=-0.973;SNPEFF_AMINO_ACID_CHANGE=M916T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67178294_67178431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:17,15:32:99:313,0,535
17    67178713    rs4968850    A    G    271.34    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.093;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.05;MQ0=0;MQRankSum=0.769;QD=11.31;ReadPosRankSum=-0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:11,13:24:99:301,0,393
17    67178954    rs4968851    C    T    1881.75    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=173;Dels=0.01;FS=2.303;HRun=0;HaplotypeScore=11.3712;MQ=57.29;MQ0=0;MQRankSum=2.464;QD=10.81;ReadPosRankSum=-1.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:77,82:173:99:1912,0,1928
17    67178976    rs112567438    GA    G    452.50    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=2.647;DB;DP=135;FS=2.125;HRun=15;HaplotypeScore=795.6099;IndelType=D;MQ=56.53;MQ0=0;MQRankSum=2.759;QD=3.35;ReadPosRankSum=2.245;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:85,39:135:99:492,0,890
17    67181540    rs11658738    C    A    361.41    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.099;QD=16.43;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:10,12:22:99:391,0,337
17    67181548    rs11655199    T    G    363.60    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.781;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.083;QD=15.15;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:10,14:24:99:394,0,329
17    67186446    rs17776227    T    G    487.36    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.916;DB;DP=42;Dels=0.0;FS=1.842;HRun=0;HaplotypeScore=0.9867;MQ=59.45;MQ0=0;MQRankSum=-1.448;QD=11.6;ReadPosRankSum=0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:22,20:42:99:517,0,716
17    67188576    rs8070232    A    G    421.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432313    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:455,36,0
17    67188668    rs8074259    T    C    2052.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432313    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2086,153,0
17    67197491    rs2364992    T    C    31.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:3,2:5:61.25:61,0,104
17    67211058    rs9909045    T    A    169.24    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=28;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.691;QD=6.04;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423818    GT:AD:DP:GQ:PL    0/1:15,13:28:99:199,0,523
17    67211118    rs9909083    T    C    79.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.23;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423818    GT:AD:DP:GQ:PL    0/1:3,3:6:99:109,0,105
17    67212031    rs11077414    A    G    1029.58    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.37;DB;DP=92;Dels=0.0;FS=1.782;HRun=0;HaplotypeScore=0.5784;MQ=59.5;MQ0=0;MQRankSum=-0.432;QD=11.19;ReadPosRankSum=0.82;SNPEFF_AMINO_ACID_CHANGE=Y261;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67211956_67212141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:54,38:92:99:1060,0,1707
17    67212423    rs9909216    G    A    1947.34    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.562;DB;DP=141;Dels=0.0;FS=6.651;HRun=0;HaplotypeScore=0.9983;MQ=59.68;MQ0=0;MQRankSum=0.371;QD=13.62;ReadPosRankSum=0.469;SNPEFF_AMINO_ACID_CHANGE=P203S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67212358_67212499;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:73,67:141:99:1977,0,2451
17    67212574    rs9912127    A    C    168.78    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.486;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.246;QD=8.04;ReadPosRankSum=-1.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423818    GT:AD:DP:GQ:PL    0/1:10,11:21:99:199,0,361
17    67212595    rs11868981    G    A    157.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.194;QD=11.27;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423818    GT:AD:DP:GQ:PL    0/1:8,6:14:99:188,0,259
17    67215712    rs12941264    C    T    866.94    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.284;DB;DP=67;Dels=0.0;FS=6.536;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.107;QD=12.94;ReadPosRankSum=-0.322;SNPEFF_AMINO_ACID_CHANGE=V168;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67215686_67215912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    0/1:37,30:67:99:897,0,1231
17    67216065    rs140943191    T    C    33.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.63;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521526    GT:AD:DP:GQ:PL    0/1:3,2:5:63.16:63,0,106
17    67221314    rs1034877    T    C    167.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCA10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269081    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
17    67245941    rs1420904    G    A    244.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,12:12:30.01:277,30,0
17    67245944    rs1420905    C    T    246.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,13:13:30.01:279,30,0
17    67249922    rs9909726    T    C    2060.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.38;MQ0=0;QD=30.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2093,157,0
17    67250378    .    T    C    640.73    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.808;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.35;QD=17.32;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    0/1:17,20:37:99:671,0,600
17    67264251    rs145417915    AGATATATCTTAG    A    701.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=169.1364;IndelType=D;MQ=44.71;MQ0=0;QD=43.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:8,8:16:24.08:743,24,0
17    67266622    rs1992741    C    T    1356.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=35.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1389,105,0
17    67267317    rs557491    T    C    1627.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_AMINO_ACID_CHANGE=M960V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67267303_67267430;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1661,123,0
17    67279959    rs56193366    C    CAGTA    676.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=25.747;IndelType=I;MQ=53.85;MQ0=0;QD=75.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:1,8:9:27.09:719,27,0
17    67280310    rs564426    A    C    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    67281849    rs34065708    T    TA    140.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=11;HaplotypeScore=11.0011;IndelType=I;MQ=63.51;MQ0=0;QD=23.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:182,18,0
17    67290840    rs17686569    T    C    2153.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=Q484R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67290796_67290854;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2186,175,0
17    67293535    rs487382    A    G    1945.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1978,144,0
17    67301123    rs5821704    A    AAT    263.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=12.954;IndelType=I;MQ=61.78;MQ0=0;QD=43.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:305,18,0
17    67304447    rs11544715    C    T    3058.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.27;MQ0=0;QD=32.19;SNPEFF_AMINO_ACID_CHANGE=A178T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_67304421_67304509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3091,232,0
17    67305364    rs11871086    C    T    1109.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.815;QD=32.63;ReadPosRankSum=0.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392676    GT:AD:DP:GQ:PL    1/1:1,33:34:50.65:1142,51,0
17    67522903    rs3729922    C    T    277.68    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.674;DB;DP=19;Dels=0.0;FS=3.245;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=14.61;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359094    GT:AD:DP:GQ:PL    0/1:10,9:19:99:308,0,357
17    67522919    rs2074030    C    T    202.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.258;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=12.68;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359094    GT:AD:DP:GQ:PL    0/1:8,8:16:99:233,0,245
17    67944708    rs180091    A    G    106.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.61;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:139,12,0
17    70034963    rs7215105    G    A    1010.37    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.015;DB;DP=90;Dels=0.0;FS=5.652;HRun=0;HaplotypeScore=3.3013;MQ=59.74;MQ0=0;MQRankSum=-0.062;QD=11.23;ReadPosRankSum=0.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP11-84E24.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424417    GT:AD:DP:GQ:PL    0/1:51,39:90:99:1040,0,1639
17    70118935    rs2229989    C    T    902.51    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.448;DB;DP=60;Dels=0.0;FS=2.306;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.579;QD=15.04;ReadPosRankSum=-0.797;SNPEFF_AMINO_ACID_CHANGE=H169;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_70118860_70119113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245479    GT:AD:DP:GQ:PL    0/1:23,37:60:99:932,0,683
17    70845688    rs12449747    C    A    977.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255559    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1011,75,0
17    70845949    rs67153681    CAA    C    81.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=34;FS=0.0;HRun=15;HaplotypeScore=307.3809;IndelType=D;MQ=51.05;MQ0=0;MQRankSum=0.742;QD=2.38;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255559    GT:AD:DP:GQ:PL    1/1:14,17:34:13.43:123,13,0
17    70943990    rs2466517    T    C    2348.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=T111A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_70943891_70944014;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255559    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2382,178,0
17    71027543    rs9912666    G    A    210.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255559    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
17    71081078    rs9891809    G    A    423.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255559    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:456,36,0
17    71165318    rs1466113    C    G    124.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357585    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:157,12,0
17    71166701    rs7220818    A    G    639.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSTR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315332    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:672,51,0
17    71193633    rs11658510    G    A    300.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299886    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:334,24,0
17    71196564    rs1026127    G    A    489.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299886    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:522,39,0
17    71197077    rs4969083    C    T    248.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299886    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
17    71197200    rs1026130    T    C    750.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299886    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:783,57,0
17    71201675    rs3829571    T    C    3604.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.8;MQ0=0;QD=31.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM104A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403627    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3605,274,0
17    71201956    rs9913183    G    A    255.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM104A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403627    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:288,24,0
17    71202718    rs7209284    T    C    126.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM104A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403627    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
17    71202801    .    C    T    152.85    HaplotypeScoreFilter13    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.723;DP=30;Dels=0.0;FS=7.375;HRun=4;HaplotypeScore=15.6658;MQ=47.12;MQ0=0;MQRankSum=-2.781;QD=5.09;ReadPosRankSum=1.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM104A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403627    GT:AD:DP:GQ:PL    0/1:10,19:30:99:183,0,281
17    71208960    rs11655656    T    C    1198.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299886    GT:AD:DP:GQ:PL    1/1:0,39:39:96.21:1232,96,0
17    71223108    rs2345285    C    G    90.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=22.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM104A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403627    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
17    71232804    rs904384    C    A    1322.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_AMINO_ACID_CHANGE=H395N;SNPEFF_CODON_CHANGE=Cat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_71231615_71233134;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255557    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1355,102,0
17    71239087    rs1566290    G    T    646.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8055;MQ=55.86;MQ0=0;QD=28.1;SNPEFF_AMINO_ACID_CHANGE=T522;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_71239035_71239142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf80;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255557    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:679,51,0
17    71334473    rs3195414    G    A    242.80    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.111;DB;DP=19;Dels=0.0;FS=5.035;HRun=0;HaplotypeScore=0.9987;MQ=59.01;MQ0=0;MQRankSum=-0.755;QD=12.78;ReadPosRankSum=-0.133;SNPEFF_AMINO_ACID_CHANGE=H2190;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_71334392_71334580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:10,9:19:99:273,0,326
17    71335260    rs3816995    G    A    34.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.98;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:3,2:5:64.91:65,0,102
17    71344889    rs9905883    C    T    828.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:861,66,0
17    71345064    rs9906342    C    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    71346353    rs28397959    A    C    193.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=12.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,15:15:21.05:226,21,0
17    71346750    rs1995163    C    G    2131.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2164,162,0
17    71346943    rs4969107    A    G    3187.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3221,241,0
17    71347027    rs12449590    G    A    579.46    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.085;QD=14.13;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:22,19:41:99:609,0,753
17    71354494    rs2030099    A    G    376.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
17    71357810    rs2279732    G    A    1488.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1521,114,0
17    71358045    rs11657033    T    C    101.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:134,12,0
17    71361576    rs11655063    G    C    45.82    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=9.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:1,4:5:15.67:76,0,16
17    71365314    rs867998    A    G    540.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:573,42,0
17    71365461    rs868000    T    A    207.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
17    71375794    rs62072075    C    T    205.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.3046;MQ=54.85;MQ0=0;MQRankSum=1.256;QD=14.71;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:6,8:14:99:236,0,107
17    71382747    rs7212508    T    C    320.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:353,27,0
17    71390366    rs904381    C    A    129.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.237;QD=8.61;ReadPosRankSum=0.412;SNPEFF_AMINO_ACID_CHANGE=G1230;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_71390348_71390463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:9,6:15:99:159,0,281
17    71394066    rs7224026    C    G    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    71397366    rs11653524    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    71398170    rs9302962    G    C    684.89    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.27;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-2.122;QD=25.37;ReadPosRankSum=-1.042;SNPEFF_AMINO_ACID_CHANGE=T41;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_71398085_71398280;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424778    GT:AD:DP:GQ:PL    0/1:3,24:27:12.93:715,0,13
17    71411088    rs9907232    T    A    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    71415132    rs6501633    T    C    108.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.04;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:2,4:6:65.41:138,0,65
17    71415159    rs8072292    C    T    232.59    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-1.818;QD=23.26;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:3,7:10:90.03:263,0,90
17    71415245    rs8071352    G    A    320.27    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.257;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6648;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=12.81;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:13,12:25:99:350,0,349
17    71418605    rs9894213    T    C    674.55    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.889;DB;DP=43;Dels=0.0;FS=5.876;HRun=0;HaplotypeScore=1.9787;MQ=58.96;MQ0=0;MQRankSum=0.158;QD=15.69;ReadPosRankSum=0.548;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:20,23:43:99:705,0,569
17    71419750    rs6501634    C    G    113.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=14.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:3,5:8:96.25:143,0,96
17    71420035    rs6501636    T    C    112.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.9734;MQ=61.19;MQ0=0;MQRankSum=-0.729;QD=12.49;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:5,4:9:99:142,0,137
17    71433758    rs34305420    A    AG    166.97    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=45.0369;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=15.18;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:6,5:11:99:206,0,218
17    71443573    rs4789622    C    T    110.71    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.14;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:1,4:5:21.93:141,0,22
17    71443696    rs7224502    C    T    188.76    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=18;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=10.49;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:10,8:18:99:219,0,347
17    71443924    rs7209875    A    G    137.53    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=2.245;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.671;QD=4.91;ReadPosRankSum=-1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:22,6:28:99:168,0,696
17    71452208    rs34494368    C    T    108.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=11.761;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=18.07;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:2,4:6:51.55:138,0,52
17    71468192    .    T    G    72.01    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=42.94;MQ0=0;MQRankSum=-2.166;QD=6.55;ReadPosRankSum=2.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:3,8:11:98.22:102,0,98
17    71503636    rs9895895    T    C    565.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.72;SNPEFF_AMINO_ACID_CHANGE=P55;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_71503577_71503736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:599,45,0
17    71503919    rs12941203    G    T    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316893    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,110
17    71746361    rs17782705    G    A    85.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=C17orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321800    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
17    71746386    rs17191848    A    G    92.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=C17orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321800    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:125,12,0
17    71746427    rs35481671    G    A    172.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=C17orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321800    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
17    71746435    rs34026863    C    T    192.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=C17orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321800    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:225,18,0
17    71746479    rs2683163    C    G    763.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=C17orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321800    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:797,60,0
17    71746508    rs2683162    T    C    939.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=34.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=C17orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321800    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:972,75,0
17    71746796    rs2620035    A    G    954.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=C17orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321800    GT:AD:DP:GQ:PL    1/1:0,32:32:75.19:987,75,0
17    72209858    rs7206926    A    G    497.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311111    GT:AD:DP:GQ:PL    1/1:0,18:18:42.12:530,42,0
17    72281367    rs6501706    A    G    484.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:518,39,0
17    72285659    rs35159044    CA    C    160.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=14;HaplotypeScore=70.8454;IndelType=D;MQ=58.98;MQ0=0;QD=13.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:0,9:12:32.89:202,33,0
17    72297104    rs34880269    C    T    924.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:0,27:27:75.20:958,75,0
17    72297180    rs8076337    A    G    2204.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2238,184,0
17    72301432    rs8073660    A    G    1708.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.817;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.038;QD=30.51;ReadPosRankSum=-0.022;SNPEFF_AMINO_ACID_CHANGE=E211;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72301358_72301581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:2,54:56:96.68:1742,97,0
17    72305534    rs2290955    C    T    804.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:0,26:26:63.20:838,63,0
17    72305688    rs2290956    T    C    143.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:176,15,0
17    72306116    rs66769719    CCT    C    985.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=89.1379;IndelType=D;MQ=59.95;MQ0=0;QD=39.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1028,75,0
17    72308319    rs1979370    G    A    409.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.21;SNPEFF_AMINO_ACID_CHANGE=A558T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72308142_72308369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311014    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:442,33,0
17    72310476    rs2054400    G    A    1344.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAI2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307504    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1377,102,0
17    72324649    rs11412158    G    GC    359.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=18.7471;IndelType=I;MQ=60.0;MQ0=0;QD=39.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389916    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:402,27,0
17    72338164    rs11285065    TC    T    872.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=5;HaplotypeScore=108.6231;IndelType=D;MQ=61.01;MQ0=0;QD=27.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389916    GT:AD:DP:GQ:PL    1/1:3,29:32:81.23:915,81,0
17    72338379    rs9915214    T    C    31.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389916    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
17    72346736    rs12451539    C    T    185.93    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.512;DB;DP=22;Dels=0.0;FS=4.545;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-1.331;QD=8.45;ReadPosRankSum=-1.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549637    GT:AD:DP:GQ:PL    0/1:14,8:22:99:216,0,499
17    72346855    rs11077744    T    C    405.30    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=36;Dels=0.0;FS=5.44;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=11.26;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=H424;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72346846_72347044;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000551294    GT:AD:DP:GQ:PL    0/1:19,17:36:99:435,0,534
17    72348810    rs1814832    A    C    376.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375366    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:410,33,0
17    72349040    rs9897137    C    T    1018.16    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.541;DB;DP=85;Dels=0.0;FS=4.253;HRun=1;HaplotypeScore=1.8318;MQ=59.73;MQ0=0;MQRankSum=-0.497;QD=11.98;ReadPosRankSum=-0.128;SNPEFF_AMINO_ACID_CHANGE=S687;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72348960_72349093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389916    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1048,0,1311
17    72349067    rs2280108    C    T    1135.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.613;DB;DP=70;Dels=0.0;FS=4.351;HRun=0;HaplotypeScore=3.5464;MQ=59.67;MQ0=0;MQRankSum=0.611;QD=16.23;ReadPosRankSum=1.044;SNPEFF_AMINO_ACID_CHANGE=S696;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72348960_72349093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389916    GT:AD:DP:GQ:PL    0/1:30,40:70:99:1166,0,685
17    72350277    rs2382642    T    G    543.63    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.448;DB;DP=46;Dels=0.0;FS=2.588;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.926;QD=11.82;ReadPosRankSum=0.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375366    GT:AD:DP:GQ:PL    0/1:25,21:46:99:574,0,736
17    72350402    rs2271534    G    A    432.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=30;Dels=0.0;FS=1.664;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.12;QD=14.41;ReadPosRankSum=-0.581;SNPEFF_AMINO_ACID_CHANGE=A804T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72350301_72350698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389916    GT:AD:DP:GQ:PL    0/1:15,15:30:99:462,0,452
17    72350412    rs2271535    G    A    396.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.482;QD=14.15;ReadPosRankSum=1.218;SNPEFF_AMINO_ACID_CHANGE=R807H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72350301_72350698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389916    GT:AD:DP:GQ:PL    0/1:14,14:28:99:426,0,455
17    72351024    rs9891620    T    C    56.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.406;QD=9.36;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=L937P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72350921_72351080;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF19;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389916    GT:AD:DP:GQ:PL    0/1:3,3:6:70.61:86,0,71
17    72351088    rs9891819    T    C    91.58    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=13;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.583;QD=7.04;ReadPosRankSum=-1.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375366    GT:AD:DP:GQ:PL    0/1:7,6:13:99:122,0,213
17    72353745    rs11547807    G    T    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.231;QD=6.14;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=A163E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72352555_72353870;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375366    GT:AD:DP:GQ:PL    0/1:3,2:6:66.83:67,0,93
17    72357805    rs12939498    C    T    80.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.04;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTBD17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375366    GT:AD:DP:GQ:PL    0/1:2,3:5:69.41:110,0,69
17    72366695    rs2382647    C    A    1395.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=30.34;SNPEFF_AMINO_ACID_CHANGE=H132N;SNPEFF_CODON_CHANGE=Cac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72366660_72366818;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR142;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335666    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1429,111,0
17    72366981    rs2382646    C    A    85.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR142;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335666    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
17    72367692    rs11658490    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR142;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335666    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    72367843    rs11652774    C    T    519.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR142;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335666    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:552,42,0
17    72368550    rs11658891    T    C    2018.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=N400;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72367868_72368739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR142;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335666    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2052,150,0
17    72443192    rs2706527    G    T    755.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.54;MQ0=0;QD=30.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392629    GT:AD:DP:GQ:PL    1/1:0,25:25:63.16:789,63,0
17    72443287    rs6980    C    G    300.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPRC5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392629    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:333,24,0
17    72469958    rs1127737    A    G    1403.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=52.17;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=P108;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72469675_72470013;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360141    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1436,117,0
17    72469966    rs2272111    G    A    555.41    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.372;DB;DP=39;Dels=0.0;FS=2.884;HRun=1;HaplotypeScore=0.0;MQ=54.97;MQ0=0;MQRankSum=0.204;QD=14.24;ReadPosRankSum=-0.175;SNPEFF_AMINO_ACID_CHANGE=R111Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72469675_72470013;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360141    GT:AD:DP:GQ:PL    0/1:20,19:39:99:585,0,522
17    72470145    rs2293189    G    A    70.47    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-0.727;QD=17.62;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310828    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:100,0,28
17    72470542    rs2293192    C    T    172.25    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.426;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=13.25;ReadPosRankSum=-0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310828    GT:AD:DP:GQ:PL    0/1:6,7:13:99:202,0,214
17    72473553    rs7209406    T    C    656.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310828    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:689,51,0
17    72473774    rs7224429    C    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310828    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    72477385    rs1879967    A    G    923.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310828    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:957,78,0
17    72519798    rs1472726    C    T    476.05    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.153;DB;DP=45;Dels=0.0;FS=3.1;HRun=0;HaplotypeScore=0.8321;MQ=58.97;MQ0=0;MQRankSum=-0.077;QD=10.58;ReadPosRankSum=0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314401    GT:AD:DP:GQ:PL    0/1:26,19:45:99:506,0,799
17    72521897    rs17553512    G    A    1068.97    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.811;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.73;MQ0=0;MQRankSum=0.568;QD=12.73;ReadPosRankSum=1.361;SNPEFF_AMINO_ACID_CHANGE=I120;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72521887_72522216;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392621    GT:AD:DP:GQ:PL    0/1:47,37:84:99:1099,0,1412
17    72527718    rs965229    A    G    37.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314401    GT:AD:DP:GQ:PL    0/1:3,2:5:67.94:68,0,107
17    72578429    .    T    C    271.05    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.277;DP=23;Dels=0.0;FS=3.834;HRun=1;HaplotypeScore=0.9997;MQ=58.99;MQ0=0;MQRankSum=-0.339;QD=11.78;ReadPosRankSum=0.092;SNPEFF_AMINO_ACID_CHANGE=E134G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72578357_72578450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375352    GT:AD:DP:GQ:PL    0/1:12,11:23:99:301,0,322
17    72588326    rs493430    A    C    2068.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=36.3;SNPEFF_AMINO_ACID_CHANGE=S6A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72588302_72588422;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375352    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2102,156,0
17    72608834    rs579238    G    A    700.55    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.569;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.27;MQ0=0;MQRankSum=-0.331;QD=12.29;ReadPosRankSum=2.079;SNPEFF_AMINO_ACID_CHANGE=V192;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72608712_72608912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328630    GT:AD:DP:GQ:PL    0/1:32,25:57:99:731,0,945
17    72608926    rs509574    G    A    450.38    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=41;Dels=0.0;FS=1.328;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.354;QD=10.98;ReadPosRankSum=-0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412268    GT:AD:DP:GQ:PL    0/1:22,19:41:99:480,0,723
17    72610089    rs1878061    C    T    95.87    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.133;QD=6.85;ReadPosRankSum=1.467;SNPEFF_AMINO_ACID_CHANGE=G158R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72610064_72610172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328630    GT:AD:DP:GQ:PL    0/1:9,5:14:99:126,0,274
17    72613589    rs581157    T    G    294.93    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=19;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.445;QD=15.52;ReadPosRankSum=0.784;SNPEFF_AMINO_ACID_CHANGE=K19T;SNPEFF_CODON_CHANGE=aAg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72613257_72613604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328630    GT:AD:DP:GQ:PL    0/1:8,11:19:99:325,0,283
17    72615293    rs12950039    C    T    168.72    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=22;Dels=0.0;FS=3.821;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=7.67;ReadPosRankSum=0.297;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_72615236_72615486;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412268    GT:AD:DP:GQ:PL    0/1:12,10:22:99:199,0,447
17    72691928    rs2034310    T    C    628.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.18;SNPEFF_AMINO_ACID_CHANGE=Q218R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72691864_72691998;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326165    GT:AD:DP:GQ:PL    1/1:0,26:26:57.10:662,57,0
17    72699384    rs749780    C    A    293.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301573    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
17    72700943    rs35489971    A    G    1867.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=35.92;SNPEFF_AMINO_ACID_CHANGE=V19A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72700617_72700955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD300LF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301573    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1901,144,0
17    72736755    rs11651291    A    G    609.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340415    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:642,48,0
17    72741232    .    T    TGGGCA    484.77    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.424;DP=15;FS=9.89;HRun=0;HaplotypeScore=63.8124;IndelType=I;MQ=59.91;MQ0=0;MQRankSum=1.493;QD=32.32;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527040    GT:AD:DP:GQ:PL    0/1:8,7:15:99:524,0,301
17    72758210    rs2305216    C    T    658.24    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.187;DB;DP=54;Dels=0.0;FS=1.098;HRun=0;HaplotypeScore=0.734;MQ=59.57;MQ0=0;MQRankSum=-0.971;QD=12.19;ReadPosRankSum=0.08;SNPEFF_AMINO_ACID_CHANGE=N117;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72758151_72758312;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3R1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413388    GT:AD:DP:GQ:PL    0/1:28,26:54:99:688,0,878
17    72768970    rs2305214    G    A    335.25    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=17;Dels=0.0;FS=2.622;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.553;QD=19.72;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262613    GT:AD:DP:GQ:PL    0/1:6,11:17:99:365,0,133
17    72769694    rs878907    A    G    988.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262613    GT:AD:DP:GQ:PL    1/1:0,34:34:81.25:1022,81,0
17    72769739    rs2305213    A    G    417.64    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.279;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8934;MQ=57.97;MQ0=0;MQRankSum=0.11;QD=9.08;ReadPosRankSum=-1.213;SNPEFF_AMINO_ACID_CHANGE=C56R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72769715_72769827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357814    GT:AD:DP:GQ:PL    0/1:25,21:46:99:448,0,779
17    72769888    rs3217575    T    TTATAA    389.21    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=68.0429;IndelType=I;MQ=53.03;MQ0=0;MQRankSum=-1.467;QD=27.8;ReadPosRankSum=0.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A3R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262613    GT:AD:DP:GQ:PL    0/1:9,5:14:99:428,0,505
17    72771637    rs750018    C    T    68.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=11.37;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357814    GT:AD:DP:GQ:PL    0/1:2,4:6:68.83:98,0,69
17    72771766    rs4788850    C    G    419.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.916;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9402;MQ=59.41;MQ0=0;MQRankSum=-0.493;QD=10.76;ReadPosRankSum=-1.366;SNPEFF_AMINO_ACID_CHANGE=V24;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72771761_72771846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357814    GT:AD:DP:GQ:PL    0/1:21,18:39:99:450,0,636
17    72773333    rs11653346    A    G    155.74    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.228;QD=14.16;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335464    GT:AD:DP:GQ:PL    0/1:4,7:11:99:186,0,119
17    72773387    rs8074137    G    A    386.25    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.157;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.22;QD=16.79;ReadPosRankSum=0.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335464    GT:AD:DP:GQ:PL    0/1:9,14:23:99:416,0,250
17    72781812    rs2166703    G    A    324.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335464    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:358,27,0
17    72784630    rs2384957    A    G    47.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335464    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
17    72784932    rs2016126    G    A    1011.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=V58M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72784928_72785009;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM104;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335464    GT:AD:DP:GQ:PL    1/1:0,34:34:75.25:1044,75,0
17    72791088    rs3830567    A    AG    526.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=73.6011;IndelType=I;MQ=58.13;MQ0=0;QD=32.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335464    GT:AD:DP:GQ:PL    1/1:1,15:16:45.12:568,45,0
17    72791266    rs9910463    G    A    705.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335464    GT:AD:DP:GQ:PL    1/1:0,23:23:60.17:739,60,0
17    72791618    rs7221435    A    G    109.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.777;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.555;QD=7.81;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM104;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335464    GT:AD:DP:GQ:PL    0/1:6,8:14:99:139,0,192
17    72838481    rs939536    C    T    161.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347612    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
17    72841987    rs55642835    T    C    166.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293190    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
17    72851133    rs689730    A    G    363.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.2;SNPEFF_AMINO_ACID_CHANGE=A33;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72850833_72851246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293190    GT:AD:DP:GQ:PL    1/1:0,15:15:33.09:396,33,0
17    72862705    rs2070918    G    A    587.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FDXR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293195    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:621,48,0
17    72888412    rs690607    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310226    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
17    72888541    rs34317584    GC    G    214.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=23.4039;IndelType=D;MQ=62.65;MQ0=0;QD=26.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310226    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:256,24,0
17    72888836    rs489152    G    A    664.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310226    GT:AD:DP:GQ:PL    1/1:0,24:24:54.13:698,54,0
17    72889685    rs2683274    G    A    104.64    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.044;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.88;MQ0=0;MQRankSum=-0.696;QD=10.46;ReadPosRankSum=0.696;SNPEFF_AMINO_ACID_CHANGE=P3;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72889504_72889705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310226    GT:AD:DP:GQ:PL    1/1:1,9:10:12.03:137,12,0
17    72889696    rs2683273    A    G    62.50    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=28.53;MQ0=0;MQRankSum=0.747;QD=7.81;ReadPosRankSum=0.747;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_72889504_72889705;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FADS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310226    GT:AD:DP:GQ:PL    1/1:1,7:8:9.02:95,9,0
17    72927123    rs6501741    G    T    1360.23    PASS    AB=0.369;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=65;Dels=0.0;FS=7.346;HRun=0;HaplotypeScore=1.9831;MQ=59.65;MQ0=0;MQRankSum=-0.469;QD=20.93;ReadPosRankSum=-0.512;SNPEFF_AMINO_ACID_CHANGE=G465W;SNPEFF_CODON_CHANGE=Ggg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72926374_72927248;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331427    GT:AD:DP:GQ:PL    0/1:24,41:65:99:1390,0,577
17    72929380    rs2035835    G    C    401.60    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=4.827;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.409;QD=10.57;ReadPosRankSum=0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331427    GT:AD:DP:GQ:PL    0/1:24,14:38:99:432,0,567
17    72937605    rs7210616    G    A    398.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=R64Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72937521_72937904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328801    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:432,33,0
17    72937851    rs9890664    G    A    941.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.57;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=R146Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72937521_72937904;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328801    GT:AD:DP:GQ:PL    1/1:0,29:29:75.21:975,75,0
17    72938100    rs1542752    T    C    749.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_AMINO_ACID_CHANGE=S199P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72937996_72938132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328801    GT:AD:DP:GQ:PL    1/1:0,25:25:57.19:782,57,0
17    72939446    rs4789110    C    T    2589.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.609;DB;DP=77;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.9556;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=33.63;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328801    GT:AD:DP:GQ:PL    1/1:1,76:77:99:2622,166,0
17    72939663    rs8069015    G    A    624.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328801    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:657,48,0
17    72943126    rs8066909    G    A    1196.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=A392;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72942756_72943570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328801    GT:AD:DP:GQ:PL    1/1:0,36:36:93.30:1230,93,0
17    72948369    rs17853024    A    G    796.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_AMINO_ACID_CHANGE=I485;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72948364_72948455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318565    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:829,69,0
17    72951823    rs9899490    C    T    160.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530857    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
17    72951845    rs9903414    G    A    213.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000530857    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:246,18,0
17    72952017    rs9906160    A    G    928.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_AMINO_ACID_CHANGE=T274;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72951887_72952051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318565    GT:AD:DP:GQ:PL    1/1:0,31:31:75.21:961,75,0
17    72956124    rs3744198    G    A    1597.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.97;SNPEFF_AMINO_ACID_CHANGE=A208;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72956121_72956343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000530857    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1631,120,0
17    72959000    rs7503218    G    C    241.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=30;Dels=0.0;FS=1.536;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.148;QD=8.07;ReadPosRankSum=-0.826;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525128    GT:AD:DP:GQ:PL    0/1:18,12:30:99:272,0,539
17    72995377    rs4789124    C    A    870.90    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=28.0606;MQ=51.84;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDR2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337231    GT:AD:DP:GQ:PL    1/1:0,31:31:69.22:904,69,0
17    72995383    rs67981463    GCACA    G    441.28    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.595;DB;DP=29;FS=9.556;HRun=0;HaplotypeScore=285.803;IndelType=D;MQ=51.09;MQ0=0;MQRankSum=1.444;QD=13.79;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDR2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337231    GT:AD:DP:GQ:PL    0/1:24,7:29:99:480,0,406
17    72997364    rs58998428    T    TAGG    279.26    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=46.6181;IndelType=I;MQ=59.03;MQ0=0;MQRankSum=0.555;QD=19.95;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDR2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337231    GT:AD:DP:GQ:PL    0/1:8,5:14:99:318,0,278
17    72999773    rs3744204    C    T    42.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.24;SNPEFF_AMINO_ACID_CHANGE=H334;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72999278_73001895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDR2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337231    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
17    73000061    rs3744203    A    G    1060.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.204;DB;DP=35;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.408;QD=30.29;ReadPosRankSum=-0.408;SNPEFF_AMINO_ACID_CHANGE=E430;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_72999278_73001895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDR2L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337231    GT:AD:DP:GQ:PL    1/1:1,34:35:53.27:1093,53,0
17    73015707    rs12449492    C    A    85.08    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=6.08;ReadPosRankSum=1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301585    GT:AD:DP:GQ:PL    0/1:10,4:14:99:115,0,372
17    73016256    rs902726    G    A    201.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301585    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:234,18,0
17    73016489    rs34496172    C    T    735.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.605;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6918;MQ=57.81;MQ0=0;MQRankSum=0.877;QD=16.34;ReadPosRankSum=-0.318;SNPEFF_AMINO_ACID_CHANGE=T122M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73016408_73016490;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301585    GT:AD:DP:GQ:PL    0/1:20,25:45:99:765,0,482
17    73016621    rs1044228    C    T    520.45    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.111;DB;DP=45;Dels=0.0;FS=2.68;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.382;QD=11.57;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=L135;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73016583_73016752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301585    GT:AD:DP:GQ:PL    0/1:26,19:45:99:550,0,711
17    73036322    rs117189411    G    A    817.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DB;DP=60;Dels=0.0;FS=2.089;HRun=0;HaplotypeScore=0.9867;MQ=59.62;MQ0=0;MQRankSum=1.492;QD=13.62;ReadPosRankSum=-2.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301587    GT:AD:DP:GQ:PL    0/1:30,30:60:99:847,0,986
17    73038746    rs9660    T    C    1333.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.55;MQ0=0;MQRankSum=1.114;QD=14.49;ReadPosRankSum=2.268;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322444    GT:AD:DP:GQ:PL    0/1:46,46:92:99:1363,0,1417
17    73058385    rs71380862    C    T    441.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=4.176;DB;DP=35;Dels=0.0;FS=2.37;HRun=2;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=1.067;QD=12.62;ReadPosRankSum=2.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322444    GT:AD:DP:GQ:PL    0/1:20,15:35:99:472,0,521
17    73089671    rs60903053    G    T    223.80    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.747;QD=27.97;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329783    GT:AD:DP:GQ:PL    0/1:1,7:8:18.57:254,0,19
17    73089676    rs138452930    CT    C    227.76    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=65.7309;IndelType=D;MQ=57.39;MQ0=0;MQRankSum=-1.179;QD=25.31;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329783    GT:AD:DP:GQ:PL    0/1:2,7:9:60.92:267,0,61
17    73089852    rs4788863    T    C    1179.42    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=0.115;DB;DP=77;Dels=0.0;FS=5.992;HRun=0;HaplotypeScore=1.6439;MQ=59.4;MQ0=0;MQRankSum=-0.542;QD=15.32;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=L41;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73089684_73089930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329783    GT:AD:DP:GQ:PL    0/1:36,41:77:99:1209,0,1015
17    73094072    rs147357552    TCTC    T    263.17    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.629;DB;DP=21;FS=8.822;HRun=0;HaplotypeScore=99.798;IndelType=D;MQ=53.61;MQ0=0;MQRankSum=-1.557;QD=12.53;ReadPosRankSum=-1.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329783    GT:AD:DP:GQ:PL    0/1:14,7:21:99:302,0,790
17    73094164    rs61738943    C    T    708.65    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.571;DB;DP=59;Dels=0.0;FS=2.492;HRun=2;HaplotypeScore=2.5779;MQ=56.58;MQ0=0;MQRankSum=1.134;QD=12.01;ReadPosRankSum=-0.602;SNPEFF_AMINO_ACID_CHANGE=F117;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73094133_73094276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538213    GT:AD:DP:GQ:PL    0/1:33,26:59:99:739,0,965
17    73096951    rs4238978    A    G    37.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.3;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329783    GT:AD:DP:GQ:PL    0/1:2,2:4:67.18:67,0,69
17    73106432    rs74697881    C    T    259.20    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.096;DB;DP=31;Dels=0.0;FS=2.062;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=-0.826;QD=8.36;ReadPosRankSum=-0.191;SNPEFF_AMINO_ACID_CHANGE=L17;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73106082_73106474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245543    GT:AD:DP:GQ:PL    0/1:19,12:31:99:289,0,546
17    73125173    rs2291027    A    G    197.39    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=15;Dels=0.0;FS=2.447;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.984;QD=13.16;ReadPosRankSum=2.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245552    GT:AD:DP:GQ:PL    0/1:8,7:15:99:227,0,284
17    73126746    rs10715821    GT    G    2090.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=1;HaplotypeScore=196.5625;IndelType=D;MQ=59.95;MQ0=0;QD=38.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245543    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2132,154,0
17    73127024    rs9910084    C    G    1374.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245543    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1408,108,0
17    73127424    rs117652839    C    T    138.92    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=15.44;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245543    GT:AD:DP:GQ:PL    0/1:4,5:9:89.33:169,0,89
17    73127683    rs4788867    T    C    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_AMINO_ACID_CHANGE=Q40;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73127629_73127877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NT5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245552    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
17    73132424    .    C    CT    601.46    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.845;DP=64;FS=0.0;HRun=10;HaplotypeScore=244.0563;IndelType=I;MQ=60.55;MQ0=0;MQRankSum=0.087;QD=9.4;ReadPosRankSum=-1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356033    GT:AD:DP:GQ:PL    0/1:38,25:64:99:640,0,441
17    73132445    rs138237652    T    A    585.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.156;DB;DP=45;Dels=0.0;FS=2.403;HRun=0;HaplotypeScore=0.0;MQ=60.07;MQ0=0;MQRankSum=-0.782;QD=13.01;ReadPosRankSum=-0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356033    GT:AD:DP:GQ:PL    0/1:25,20:45:99:615,0,841
17    73138980    rs151283915    TAC    T    802.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=105.3468;IndelType=D;MQ=60.72;MQ0=0;QD=26.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465454    GT:AD:DP:GQ:PL    1/1:7,23:30:69.21:845,69,0
17    73143574    rs1382508    T    A    810.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465454    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:844,63,0
17    73177444    rs1471453    C    A    90.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314523    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    73204530    rs899326    T    C    729.28    MQFilter40    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.755;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.9618;MQ=37.48;MQ0=0;MQRankSum=-1.237;QD=11.96;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245544    GT:AD:DP:GQ:PL    0/1:31,29:61:99:759,0,914
17    73204555    .    AAAG    A    98.59    QDFilter2    AB=0.947;AC=1;AF=0.50;AN=2;BaseQRankSum=4.962;DP=107;FS=11.414;HRun=0;HaplotypeScore=1146.1072;IndelType=D;MQ=41.73;MQ0=0;MQRankSum=-0.542;QD=0.92;ReadPosRankSum=5.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245544    GT:AD:DP:GQ:PL    0/1:101,6:107:99:138,0,569
17    73204556    .    AAG    A    143.19    QDFilter2    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=4.808;DP=110;FS=11.017;HRun=0;HaplotypeScore=1118.6471;IndelType=D;MQ=42.33;MQ0=0;MQRankSum=-1.309;QD=1.3;ReadPosRankSum=4.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245544    GT:AD:DP:GQ:PL    0/1:87,23:110:99:182,0,645
17    73208205    rs56406015    G    GTGTT    529.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=38.8599;IndelType=I;MQ=57.91;MQ0=1;QD=48.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245544    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:572,27,0
17    73221074    rs1871270    T    G    256.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245544    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:290,24,0
17    73221439    rs2291029    C    T    1046.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=P199;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73221437_73221559;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP85;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449421    GT:AD:DP:GQ:PL    1/1:0,30:30:84.26:1080,84,0
17    73227529    rs78010571    G    A    465.04    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=44;Dels=0.0;FS=4.722;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.01;QD=10.57;ReadPosRankSum=0.658;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449421    GT:AD:DP:GQ:PL    0/1:23,21:44:99:495,0,697
17    73227761    rs4486943    A    G    494.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.509;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.627;QD=17.65;ReadPosRankSum=-1.834;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    0/1:12,16:28:99:524,0,396
17    73228101    rs899318    T    C    659.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=28.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:692,57,0
17    73228236    rs899319    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
17    73228704    rs936541    C    A    321.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.29;MQ0=0;QD=29.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:355,27,0
17    73230856    rs9988    C    T    4131.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.81;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=D183;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73230732_73230883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP85;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540768    GT:AD:DP:GQ:PL    1/1:0,120:120:99:4131,304,0
17    73231817    rs11290361    AT    A    629.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=7;HaplotypeScore=70.6006;IndelType=D;MQ=61.71;MQ0=0;QD=25.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:1,24:25:66.15:672,66,0
17    73236605    rs11077781    C    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537686    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
17    73238208    rs1985808    T    C    175    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
17    73240559    rs2306216    A    G    1129.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=30.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1162,105,0
17    73240836    rs4789156    T    C    2584.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2618,223,0
17    73242501    rs2242229    G    T    172.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
17    73242895    rs2242230    A    G    1196.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,34:34:96.28:1229,96,0
17    73242935    rs2242231    A    G    495.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245541    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:528,42,0
17    73257986    rs8075276    C    T    284.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_AMINO_ACID_CHANGE=A2V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73257749_73258064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245539    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:317,24,0
17    73258085    .    GGC    G    570.71    PASS    AC=2;AF=1.00;AN=2;DP=15;FS=0.0;HRun=0;HaplotypeScore=60.2602;IndelType=D;MQ=62.82;MQ0=0;QD=38.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIF4GD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245551    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:613,42,0
17    73258479    rs6501772    C    T    2061.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIF4GD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245551    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2095,163,0
17    73266056    rs76513208    A    C    527.99    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.349;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.36;MQ0=0;MQRankSum=0.032;QD=14.67;ReadPosRankSum=-0.539;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245539    GT:AD:DP:GQ:PL    0/1:17,19:36:99:558,0,574
17    73269530    rs1809352    A    G    745.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=29.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375261    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:779,66,0
17    73269841    rs3082641    A    ATTATT    399.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=46.9327;IndelType=I;MQ=49.5;MQ0=0;QD=33.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320362    GT:AD:DP:GQ:PL    1/1:7,5:12:15.04:441,15,0
17    73279624    rs7213318    A    G    503.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=55.82;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=Y113;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73279504_73279674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320362    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:536,42,0
17    73279700    rs4788882    C    T    376.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320362    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:410,30,0
17    73282206    rs72850307    C    T    748.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320362    GT:AD:DP:GQ:PL    1/1:0,21:22:63.19:781,63,0
17    73316679    rs8079197    G    C    406.10    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.782;DB;DP=27;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.879;QD=15.04;ReadPosRankSum=-0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316615    GT:AD:DP:GQ:PL    0/1:10,17:27:99:436,0,312
17    73317644    rs12946365    C    T    279.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.038;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.491;QD=13.98;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316615    GT:AD:DP:GQ:PL    0/1:10,10:20:99:310,0,308
17    73328773    rs1529844    T    C    907.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316615    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:940,69,0
17    73389446    rs4788890    A    G    62.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=8.98;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316615    GT:AD:DP:GQ:PL    0/1:3,4:7:92.88:93,0,105
17    73482110    rs11331365    TC    T    265.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=24.5073;IndelType=D;MQ=61.19;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:308,24,0
17    73482664    rs9899149    T    C    82.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
17    73484694    rs56323400    C    T    356.26    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.829;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.152;QD=12.72;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    0/1:15,13:28:99:386,0,521
17    73484753    rs11652993    C    G    1655.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1688,129,0
17    73485033    rs11867527    T    C    1129.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,39:39:96.25:1162,96,0
17    73485781    rs8079362    C    T    335.51    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=24;Dels=0.0;FS=3.171;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.98;ReadPosRankSum=1.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    0/1:13,11:24:99:366,0,355
17    73486626    rs6501812    G    A    171.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
17    73488794    rs4078259    C    T    2225.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=I612;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73488555_73488870;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2258,174,0
17    73489220    rs7215753    T    C    771.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:1,21:22:63.16:804,63,0
17    73489567    rs4078474    C    G    217.84    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.884;DB;DP=23;Dels=0.0;FS=2.192;HRun=0;HaplotypeScore=0.734;MQ=58.99;MQ0=0;MQRankSum=1.519;QD=9.47;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    0/1:13,10:23:99:248,0,464
17    73490036    rs55768663    C    T    33.32    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.66;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    0/1:3,2:5:63.31:63,0,98
17    73490611    rs8078131    A    G    66.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:98,9,0
17    73491894    rs11077792    G    A    253.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321617    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:287,21,0
17    73494963    rs9894026    G    A    960.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321617    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:994,75,0
17    73497415    rs8081353    T    C    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
17    73497417    rs8081354    T    C    79.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
17    73497439    rs8075850    G    A    509.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:542,42,0
17    73497794    rs9892311    T    C    716.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,24:24:57.18:749,57,0
17    73498483    rs7503373    T    C    170.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=E809G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73497860_73499335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433559    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
17    73498623    rs7502835    A    G    156.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_AMINO_ACID_CHANGE=S762;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73497860_73499335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433559    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
17    73498652    rs77001351    G    A    114.96    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=16.42;ReadPosRankSum=-1.495;SNPEFF_AMINO_ACID_CHANGE=R753C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73497860_73499335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433559    GT:AD:DP:GQ:PL    0/1:2,5:7:54.20:145,0,54
17    73499697    rs7207376    T    C    453.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=28.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314256    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:486,39,0
17    73501752    rs8069700    G    A    667.67    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.403;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4892;MQ=57.92;MQ0=0;MQRankSum=-1.313;QD=12.36;ReadPosRankSum=-0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321617    GT:AD:DP:GQ:PL    0/1:29,25:54:99:698,0,998
17    73502118    rs28558885    G    A    244.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321617    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
17    73502530    .    G    A    391.84    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.622;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=15.67;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321617    GT:AD:DP:GQ:PL    0/1:11,14:25:99:422,0,315
17    73503489    rs10852764    G    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321617    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    73504416    rs6501815    T    C    264.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321617    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:297,24,0
17    73510012    rs4789206    A    T    243.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.79;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_73509792_73510289;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASKIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321617    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
17    73513677    rs11559205    A    C    1484.63    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.516;DB;DP=135;Dels=0.0;FS=0.652;HRun=0;HaplotypeScore=2.2566;MQ=55.61;MQ0=0;MQRankSum=0.5;QD=11.0;ReadPosRankSum=-2.914;SNPEFF_AMINO_ACID_CHANGE=I137L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73513638_73513736;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333213    GT:AD:DP:GQ:PL    0/1:74,61:135:99:1515,0,2017
17    73514944    rs62088466    A    G    213.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.406;QD=15.26;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333213    GT:AD:DP:GQ:PL    0/1:7,7:14:99:244,0,253
17    73515237    rs55786842    A    G    585.41    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.141;QD=20.91;ReadPosRankSum=1.552;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333213    GT:AD:DP:GQ:PL    0/1:11,17:28:99:615,0,369
17    73519137    rs62088468    A    C    39.36    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.87;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333213    GT:AD:DP:GQ:PL    0/1:3,2:5:69.36:69,0,103
17    73519413    rs8064529    C    T    1504.50    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.606;DB;DP=86;Dels=0.0;FS=3.449;HRun=0;HaplotypeScore=1.7791;MQ=59.73;MQ0=0;MQRankSum=0.076;QD=17.49;ReadPosRankSum=-0.507;SNPEFF_AMINO_ACID_CHANGE=A437V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73519356_73519416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333213    GT:AD:DP:GQ:PL    0/1:35,51:86:99:1534,0,910
17    73519589    rs62088469    T    C    97.90    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.99;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333213    GT:AD:DP:GQ:PL    0/1:8,5:14:99:128,0,287
17    73520359    rs62088470    C    G    408.10    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.436;DB;DP=46;Dels=0.0;FS=3.154;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=8.87;ReadPosRankSum=0.432;SNPEFF_AMINO_ACID_CHANGE=P483A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73520343_73520820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333213    GT:AD:DP:GQ:PL    0/1:29,17:46:99:438,0,861
17    73539385    rs62088546    T    C    483.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.247;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.416;QD=19.35;ReadPosRankSum=1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:10,15:25:99:514,0,299
17    73539631    rs6501822    A    G    486.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:519,39,0
17    73539795    rs6501823    G    C    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    73552062    rs2305528    G    C    170.84    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=12.2;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:4,10:14:99:201,0,128
17    73552185    rs1671036    G    A    608.69    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.143;DB;DP=45;Dels=0.0;FS=1.161;HRun=0;HaplotypeScore=3.3035;MQ=60.0;MQ0=0;MQRankSum=-0.931;QD=13.53;ReadPosRankSum=-0.884;SNPEFF_AMINO_ACID_CHANGE=R45H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73552127_73552224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:20,24:45:99:639,0,485
17    73554523    rs1671033    C    G    390.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:424,33,0
17    73559342    rs936060    G    A    197.04    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.405;QD=13.14;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:8,7:15:99:227,0,273
17    73559563    rs1671028    G    A    183.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=16;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.103;QD=11.47;ReadPosRankSum=1.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:8,8:16:99:214,0,236
17    73559629    rs1671027    A    G    68.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.19;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:99,0,30
17    73565171    rs1671021    T    C    183.85    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=15;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=0.734;MQ=58.75;MQ0=0;MQRankSum=-0.174;QD=12.26;ReadPosRankSum=-1.447;SNPEFF_AMINO_ACID_CHANGE=F468L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73565059_73565212;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545227    GT:AD:DP:GQ:PL    0/1:8,7:15:99:214,0,283
17    73565262    rs2305526    T    A    1047.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375227    GT:AD:DP:GQ:PL    1/1:0,34:34:84.21:1080,84,0
17    73567846    rs1661715    C    T    397.49    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.068;DB;DP=25;Dels=0.0;FS=1.828;HRun=0;HaplotypeScore=0.9933;MQ=58.13;MQ0=0;MQRankSum=1.232;QD=15.9;ReadPosRankSum=-1.068;SNPEFF_AMINO_ACID_CHANGE=P748S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73567748_73567864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545227    GT:AD:DP:GQ:PL    0/1:11,14:25:99:427,0,366
17    73568055    rs1661714    C    T    305.86    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=20;Dels=0.0;FS=5.842;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.791;QD=15.29;ReadPosRankSum=0.58;SNPEFF_AMINO_ACID_CHANGE=P779;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73567979_73568145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545227    GT:AD:DP:GQ:PL    0/1:7,13:20:99:336,0,164
17    73568984    rs1671020    G    A    97.01    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.533;QD=6.93;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:8,6:14:99:127,0,279
17    73569010    rs1661713    T    C    131.69    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.307;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.71;QD=6.93;ReadPosRankSum=0.833;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:13,6:19:99:162,0,364
17    73569511    rs117651797    C    T    438.83    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.725;DB;DP=60;Dels=0.0;FS=1.245;HRun=0;HaplotypeScore=1.9996;MQ=56.45;MQ0=0;MQRankSum=0.198;QD=7.31;ReadPosRankSum=-1.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:37,23:60:99:469,0,1166
17    73570718    rs1126939    C    G    200.52    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.953;DB;DP=16;Dels=0.0;FS=2.276;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=12.53;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=P983R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73570691_73570749;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545227    GT:AD:DP:GQ:PL    0/1:7,9:16:99:231,0,166
17    73570756    rs1661712    G    T    216.60    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=11.4;ReadPosRankSum=0.844;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:9,10:19:99:247,0,262
17    73571030    rs1042861    A    G    509.03    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=3.507;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.327;QD=10.83;ReadPosRankSum=-1.587;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LLGL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000167462    GT:AD:DP:GQ:PL    0/1:28,19:47:99:539,0,730
17    73586358    rs820242    G    A    749.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:782,57,0
17    73586413    rs79794615    C    T    291.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.256;QD=11.2;ReadPosRankSum=-1.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    0/1:13,13:26:99:321,0,317
17    73597544    rs11871553    A    G    503.90    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=32;Dels=0.0;FS=5.632;HRun=1;HaplotypeScore=0.7887;MQ=59.28;MQ0=0;MQRankSum=0.507;QD=15.75;ReadPosRankSum=-0.142;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_73597519_73597644;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    0/1:12,20:32:99:534,0,338
17    73599052    .    A    G    67.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=8.47;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    0/1:4,4:8:97.78:98,0,132
17    73601755    rs936054    G    A    129.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
17    73609112    rs820142    G    A    34.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=6.99;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_73609055_73609290;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    0/1:3,2:5:64.93:65,0,78
17    73612642    rs11439064    A    AT    812.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=65.9216;IndelType=I;MQ=61.69;MQ0=0;QD=42.77;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_73612605_73612865;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:855,57,0
17    73616211    rs34367237    TG    T    179.64    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=2.717;DB;DP=18;FS=4.359;HRun=2;HaplotypeScore=67.9087;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.272;QD=9.98;ReadPosRankSum=0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    0/1:11,7:18:99:219,0,441
17    73616239    rs820153    C    G    183.97    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.95;QD=9.68;ReadPosRankSum=-1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    0/1:11,8:19:99:214,0,378
17    73620804    rs820187    C    A    273.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317905    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:307,24,0
17    73621432    rs820188    A    G    164.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317905    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:197,15,0
17    73625430    rs4788902    G    A    437.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_AMINO_ACID_CHANGE=H286;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73625014_73625555;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443199    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:470,39,0
17    73625478    rs820191    T    C    672.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=28.0;SNPEFF_AMINO_ACID_CHANGE=T270;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73625014_73625555;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443199    GT:AD:DP:GQ:PL    1/1:0,23:24:54.17:705,54,0
17    73625629    rs820192    A    C    594.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;QD=34.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:627,48,0
17    73626817    rs820194    G    A    66.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.26;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    0/1:4,4:8:96.05:96,0,141
17    73626829    rs820195    C    G    156.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
17    73626983    rs9896073    G    C    155.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.576;DB;DP=18;Dels=0.0;FS=2.884;HRun=3;HaplotypeScore=0.0;MQ=55.19;MQ0=0;MQRankSum=2.014;QD=8.67;ReadPosRankSum=1.639;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    0/1:12,6:18:99:186,0,365
17    73627539    rs820196    T    C    699.67    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.604;DB;DP=45;Dels=0.0;FS=4.511;HRun=4;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-2.582;QD=15.55;ReadPosRankSum=-1.831;SNPEFF_AMINO_ACID_CHANGE=D480G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73627530_73627748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317905    GT:AD:DP:GQ:PL    0/1:21,24:45:99:730,0,650
17    73627565    rs820197    A    G    1293.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=29.4;SNPEFF_AMINO_ACID_CHANGE=Y471;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73627530_73627748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317905    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1327,108,0
17    73627818    rs820198    T    C    105.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293201    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:138,12,0
17    73647138    rs1661744    C    T    592.57    PASS    AB=0.326;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.99;MQ0=0;MQRankSum=-0.184;QD=12.88;ReadPosRankSum=-1.508;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556126    GT:AD:DP:GQ:PL    0/1:15,31:46:99:623,0,461
17    73647139    rs1661745    A    G    509.59    PASS    AB=0.289;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.417;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.99;MQ0=0;MQRankSum=0.088;QD=11.08;ReadPosRankSum=-1.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf110;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556126    GT:AD:DP:GQ:PL    0/1:13,32:46:99:540,0,430
17    73658489    rs820159    T    C    5920.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=168;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.3962;MQ=59.75;MQ0=0;QD=35.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317905    GT:AD:DP:GQ:PL    1/1:0,168:168:99:5921,433,0
17    73660992    .    C    CA    514.39    PASS    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=1.252;DP=152;FS=4.402;HRun=18;HaplotypeScore=1390.0939;IndelType=I;MQ=43.27;MQ0=0;MQRankSum=-1.738;QD=3.36;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RECQL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317905    GT:AD:DP:GQ:PL    0/1:96,28:152:99:553,0,521
17    73668107    rs820129    A    G    80.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.05;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP30BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293208    GT:AD:DP:GQ:PL    0/1:2,3:5:64.16:110,0,64
17    73698481    rs6501830    G    C    150.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=18;Dels=0.0;FS=2.762;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.077;QD=8.34;ReadPosRankSum=0.702;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP30BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293208    GT:AD:DP:GQ:PL    0/1:12,6:18:99:180,0,406
17    73698557    rs820232    C    T    1936.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP30BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293208    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1970,144,0
17    73702253    rs2305529    G    A    46.59    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=4.24;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP30BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293208    GT:AD:DP:GQ:PL    0/1:8,3:11:76.58:77,0,285
17    73702317    rs820230    A    G    551.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP30BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293208    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:584,51,0
17    73702402    rs820229    T    C    1784.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAP30BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293208    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1818,138,0
17    73720638    rs820166    C    T    161.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
17    73720900    rs820167    A    G    278.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:311,24,0
17    73723239    rs2584100    G    A    253.04    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=14.88;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:7,10:17:99:283,0,159
17    73723453    rs34275940    GC    G    312.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=6;HaplotypeScore=32.5065;IndelType=D;MQ=60.0;MQ0=0;QD=26.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    1/1:1,11:12:33.08:355,33,0
17    73725298    rs1661674    C    T    267.08    SnpCluster    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=53.71;MQ0=0;MQRankSum=-0.362;QD=9.89;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:7,13:27:99:297,0,184
17    73725301    rs34598265    C    T    272.49    SnpCluster    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=54.44;MQ0=0;MQRankSum=0.634;QD=10.48;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:8,11:26:99:302,0,157
17    73725304    rs1661675    C    G    295.30    SnpCluster    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=27;Dels=0.0;FS=2.251;HRun=0;HaplotypeScore=2.101;MQ=53.71;MQ0=0;MQRankSum=0.036;QD=10.94;ReadPosRankSum=0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:9,17:27:99:325,0,217
17    73732025    rs820174    C    T    225.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.827;QD=9.01;ReadPosRankSum=0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:16,8:25:99:255,0,571
17    73732045    rs820175    T    C    323.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.456;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=9.81;ReadPosRankSum=1.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:22,11:33:99:354,0,765
17    73732428    rs2290460    G    A    689.90    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.787;DB;DP=55;Dels=0.0;FS=1.101;HRun=0;HaplotypeScore=1.5661;MQ=57.87;MQ0=0;MQRankSum=-1.423;QD=12.54;ReadPosRankSum=-0.191;SNPEFF_AMINO_ACID_CHANGE=S523;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73732369_73732467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450894    GT:AD:DP:GQ:PL    0/1:30,25:55:99:720,0,707
17    73732522    rs820176    T    G    180.62    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=57.66;MQ0=0;MQRankSum=-0.555;QD=9.03;ReadPosRankSum=0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:13,7:20:99:211,0,422
17    73735920    rs2290459    G    A    417.19    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=60.0;MQ0=0;MQRankSum=-0.771;QD=13.04;ReadPosRankSum=-0.613;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:16,15:32:99:447,0,535
17    73738615    rs2290456    T    C    270.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.718;QD=13.53;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:10,10:20:99:301,0,349
17    73739605    rs56893346    C    T    34.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.53;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:64,0,36
17    73746146    rs820387    T    C    599.85    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.463;DB;DP=43;Dels=0.0;FS=4.933;HRun=0;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=1.072;QD=13.95;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:18,25:43:99:630,0,521
17    73746370    rs820388    T    C    202.51    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=3.802;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=16.88;ReadPosRankSum=-1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:5,7:12:99:233,0,162
17    73748108    rs820391    C    T    385.40    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.208;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.849;QD=21.41;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000200181    GT:AD:DP:GQ:PL    0/1:5,13:18:99:415,0,109
17    73750859    rs8669    C    G    536.79    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.977;DB;DP=44;Dels=0.0;FS=1.342;HRun=0;HaplotypeScore=0.8321;MQ=48.43;MQ0=0;MQRankSum=0.041;QD=12.2;ReadPosRankSum=0.095;SNPEFF_AMINO_ACID_CHANGE=P1437;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73750657_73750896;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITGB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339591    GT:AD:DP:GQ:PL    0/1:20,24:44:99:567,0,500
17    73751042    rs3988219    C    CACAT    374.99    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=25.1335;IndelType=I;MQ=53.93;MQ0=0;MQRankSum=-0.198;QD=53.57;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225614    GT:AD:DP:GQ:PL    0/1:2,5:7:58.87:414,0,59
17    73751990    rs1008177    T    A    153.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=17.02;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225614    GT:AD:DP:GQ:PL    0/1:4,5:9:99:183,0,138
17    73752999    rs2249613    C    G    985.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225614    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1019,78,0
17    73753440    rs73352105    A    G    395.76    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.523;QD=15.83;ReadPosRankSum=0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225614    GT:AD:DP:GQ:PL    0/1:12,13:25:99:426,0,363
17    73753661    rs9367    C    T    802.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.28;MQ0=0;QD=24.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225614    GT:AD:DP:GQ:PL    1/1:0,33:33:66.18:835,66,0
17    73759038    rs67323992    TC    T    664.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=3;HaplotypeScore=50.9133;IndelType=D;MQ=60.57;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225614    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:706,57,0
17    73759304    rs820386    G    T    786.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225614    GT:AD:DP:GQ:PL    1/1:0,24:24:66.17:820,66,0
17    73759552    rs7209235    G    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225614    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
17    73774841    rs2071654    G    A    1772.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9385;MQ=58.83;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H3F3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254810    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1806,141,0
17    73808086    rs149206483    AAAC    A    751.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=93.9396;IndelType=D;MQ=61.69;MQ0=0;QD=39.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293218    GT:AD:DP:GQ:PL    1/1:1,18:19:57.16:793,57,0
17    73808780    rs8067328    C    T    364.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293218    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:398,30,0
17    73816404    rs28404846    C    T    129.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087289.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326348    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
17    73819137    rs8078452    T    C    83.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
17    73819159    rs146545692    G    A    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
17    73819525    rs8078208    C    T    204.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=S809;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73819346_73819603;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293218    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
17    73824121    rs7210574    T    C    112.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=22.59;SNPEFF_AMINO_ACID_CHANGE=E1066;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73823310_73824167;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:145,12,0
17    73826611    rs2290768    G    A    209.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293218    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:243,18,0
17    73827205    rs1135688    T    C    372.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=24.81;SNPEFF_AMINO_ACID_CHANGE=K867E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73827179_73827250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,15:15:30.10:405,30,0
17    73827436    rs3217698    C    CG    315.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=4;HaplotypeScore=35.3436;IndelType=I;MQ=61.94;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:2,9:11:27.09:358,27,0
17    73830270    rs7212635    G    A    404.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:438,33,0
17    73831658    rs3744024    A    G    373.41    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.737;QD=28.72;ReadPosRankSum=-1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    0/1:1,12:13:2.46:402,0,2
17    73831900    rs3744026    T    C    1384.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=26.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1418,117,0
17    73833087    .    C    CCCTCCTCCAGGG    1709.28    PASS    AC=2;AF=1.00;AN=2;DP=16;FS=0.0;HRun=0;HaplotypeScore=227.387;IndelType=I;MQ=48.66;MQ0=0;QD=106.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:3,1:16:45.15:1751,45,0
17    73833088    .    C    G    100.58    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.071;DP=16;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=11.9942;MQ=48.66;MQ0=0;MQRankSum=-0.071;QD=6.29;ReadPosRankSum=-1.909;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    0/1:10,4:16:99:131,0,158
17    73836086    rs140758914    A    C    299.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=24.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,12:12:27.07:332,27,0
17    73836162    rs7223416    C    G    466.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=29.17;SNPEFF_AMINO_ACID_CHANGE=P296;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73836099_73836191;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,16:16:39.10:500,39,0
17    73836972    rs9902592    A    G    5049.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;DB;DP=158;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7779;MQ=58.82;MQ0=0;MQRankSum=-0.504;QD=31.96;ReadPosRankSum=1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:1,157:158:99:5050,360,0
17    73837126    rs73997627    T    A    2319.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9841;MQ=58.34;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2352,184,0
17    73837142    rs8067076    A    C    1489.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.15;MQ0=0;QD=28.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1522,135,0
17    73838322    rs8066943    A    G    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
17    73838816    rs3744006    G    A    1220.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1254,99,0
17    73839137    rs3744007    G    A    534.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.72;SNPEFF_AMINO_ACID_CHANGE=P93;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73839095_73839154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    1/1:0,18:18:45.10:568,45,0
17    73839326    rs9904366    C    T    197.15    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.812;DB;DP=22;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.244;QD=8.96;ReadPosRankSum=-0.462;SNPEFF_AMINO_ACID_CHANGE=A59T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73839240_73839347;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000207549    GT:AD:DP:GQ:PL    0/1:13,9:22:99:227,0,320
17    73839473    rs9904778    C    T    127.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
17    73840243    rs3744010    G    A    413.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:446,33,0
17    73844748    rs2290771    A    G    715.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:748,57,0
17    73847799    rs936391    G    A    1046.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254806    GT:AD:DP:GQ:PL    1/1:0,30:30:84.25:1080,84,0
17    73886888    rs3760128    A    G    138.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=23.13;SNPEFF_AMINO_ACID_CHANGE=L509P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73885041_73887428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM65;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269383    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:171,12,0
17    73888534    rs148442922    G    A    417.89    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.248;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=14.41;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=S186;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73888348_73888581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM65;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269383    GT:AD:DP:GQ:PL    0/1:14,15:29:99:448,0,389
17    73888774    rs55790130    C    A    281.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269383    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
17    73894804    rs7370    G    A    206.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461602    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
17    73897033    rs111405920    A    AC    984.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.0;HRun=5;HaplotypeScore=73.0472;IndelType=I;MQ=58.68;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410030    GT:AD:DP:GQ:PL    1/1:1,27:28:78.25:1027,78,0
17    73900503    rs76759610    C    T    445.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=34.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309352    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:479,39,0
17    73900537    rs114755328    G    A    330.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=27.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309352    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:364,33,0
17    73900688    rs3744015    T    C    176.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.09;SNPEFF_AMINO_ACID_CHANGE=R60;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73900621_73900800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL38;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309352    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:210,18,0
17    73906934    rs9302994    G    A    194.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=19.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319129    GT:AD:DP:GQ:PL    1/1:0,10:10:18.06:228,18,0
17    73910027    rs61736662    C    T    249.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=27.75;SNPEFF_AMINO_ACID_CHANGE=E1017;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73909994_73910131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319129    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:283,24,0
17    73913729    rs4788912    C    G    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319129    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
17    73913965    rs11288315    TC    T    298.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=5;HaplotypeScore=49.3888;IndelType=D;MQ=56.22;MQ0=0;QD=27.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319129    GT:AD:DP:GQ:PL    1/1:1,10:11:30.09:340,30,0
17    73917841    rs117690091    G    A    38.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319129    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
17    73922941    rs2305913    T    C    1856.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=R151G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_73922839_73922958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319129    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1889,144,0
17    73923095    rs138338045    TG    T    210.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=27.8046;IndelType=D;MQ=61.19;MQ0=0;QD=23.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319129    GT:AD:DP:GQ:PL    1/1:2,7:9:21.06:252,21,0
17    73934235    rs79303947    C    T    2202.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_73934228_73934313;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319129    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2235,163,0
17    73942963    rs28590720    T    G    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293217    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:72,6,0
17    73942976    rs2666003    G    A    74.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293217    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:107,9,0
17    73943071    rs28496893    T    G    34.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
17    73944596    rs2666005    T    G    717.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;QD=31.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293217    GT:AD:DP:GQ:PL    1/1:0,22:23:57.17:751,57,0
17    73953404    rs11077798    T    C    325.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293217    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
17    73997474    rs2069528    G    A    493.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC040980.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397640    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:526,39,0
17    74006655    rs62090078    G    A    251.46    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=19.34;ReadPosRankSum=1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425876    GT:AD:DP:GQ:PL    0/1:5,8:13:99:281,0,161
17    74011452    rs2071195    G    A    806.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=38.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:840,63,0
17    74011721    rs2665970    C    A    249.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
17    74014468    rs2071194    C    A    163.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
17    74014628    rs2071193    G    A    684.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=H446;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74014527_74014681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:717,54,0
17    74014668    rs2071192    T    C    583.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.99;MQ0=0;QD=27.77;SNPEFF_AMINO_ACID_CHANGE=Q433R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74014527_74014681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,21:21:48.12:616,48,0
17    74015354    rs2244377    A    G    35.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
17    74015590    rs2244371    C    T    859.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:892,69,0
17    74015595    rs2244370    T    C    900.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,27:27:72.20:934,72,0
17    74018655    rs2598417    C    T    256.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:289,24,0
17    74019572    rs2257388    T    C    1292.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.24;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301607    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1326,105,0
17    74035444    rs17498898    G    A    965.28    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=58;Dels=0.0;FS=2.269;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.67;QD=16.64;ReadPosRankSum=-0.062;SNPEFF_AMINO_ACID_CHANGE=R310C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74035187_74035477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP68;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411758    GT:AD:DP:GQ:PL    0/1:27,31:58:99:995,0,764
17    74036468    rs2305346    C    T    348.55    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=19;Dels=0.0;FS=2.199;HRun=2;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.124;QD=18.34;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRP68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304220    GT:AD:DP:GQ:PL    0/1:8,11:19:99:379,0,259
17    74076127    rs34700740    TC    T    128.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=5;HaplotypeScore=14.8172;IndelType=D;MQ=60.0;MQ0=0;QD=21.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332065    GT:AD:DP:GQ:PL    1/1:1,5:6:15.04:170,15,0
17    74076415    rs2257020    G    A    1783.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.25;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=A152T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74076336_74076505;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZACN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334586    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1816,138,0
17    74076642    rs2257028    G    A    210.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332065    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
17    74077497    rs8836    G    C    1769.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=28.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335146    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1803,147,0
17    74079838    rs2665986    A    G    880.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3574;MQ=60.0;MQ0=0;QD=30.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460476    GT:AD:DP:GQ:PL    1/1:0,29:29:72.21:914,72,0
17    74081345    rs2246277    C    T    120.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460476    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
17    74081618    rs2598450    C    T    108.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486053    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:141,12,0
17    74083948    rs2290246    C    A    124.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405068    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
17    74084029    rs2243486    C    T    460.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405068    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:494,39,0
17    74084428    rs2305348    C    G    248.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405068    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
17    74084441    rs2246621    C    T    297.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405068    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:331,27,0
17    74084449    rs2246623    C    T    310.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405068    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:344,27,0
17    74084737    rs2246632    T    C    527.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405068    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:560,45,0
17    74085012    rs2084666    G    A    814.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=31.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405068    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:848,66,0
17    74090385    rs2243538    G    A    171.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420116    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
17    74090700    rs2250081    G    A    697.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.36;MQ0=0;QD=27.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442951    GT:AD:DP:GQ:PL    1/1:0,25:25:60.16:730,60,0
17    74093726    rs8064909    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406660    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    74094105    rs7208391    C    G    1319.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406660    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1353,99,0
17    74133974    rs894542    C    T    70.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.02;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=T242;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74132425_74134201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXJ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322957    GT:AD:DP:GQ:PL    0/1:2,3:5:64.94:100,0,65
17    74134318    rs34418968    A    AG    141.88    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=15;FS=0.0;HRun=7;HaplotypeScore=56.7682;IndelType=I;MQ=55.99;MQ0=0;MQRankSum=1.749;QD=9.46;ReadPosRankSum=-1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:9,6:15:99:181,0,112
17    74151456    rs894544    C    T    268.34    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.385;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=11.67;ReadPosRankSum=-0.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:12,11:23:99:298,0,432
17    74152366    rs881502    A    G    679.86    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.062;QD=13.6;ReadPosRankSum=-1.651;SNPEFF_AMINO_ACID_CHANGE=L484;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74152291_74152402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:24,26:50:99:710,0,679
17    74158801    rs4788915    C    T    73.05    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.937;QD=10.44;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,134
17    74162997    rs2278826    A    G    500.92    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.343;DB;DP=52;Dels=0.0;FS=1.166;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.565;QD=9.63;ReadPosRankSum=-0.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:30,22:52:99:531,0,948
17    74169889    rs71996459    CAGG    C    186.82    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=41.9294;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=18.68;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:5,5:10:99:226,0,248
17    74208424    rs9911122    G    A    806.19    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.834;DB;DP=68;Dels=0.0;FS=0.932;HRun=1;HaplotypeScore=0.9894;MQ=59.66;MQ0=0;MQRankSum=-1.019;QD=11.86;ReadPosRankSum=0.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:38,30:68:99:836,0,1148
17    74208622    rs35372072    T    TA    83.32    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=15;FS=0.0;HRun=11;HaplotypeScore=36.446;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=5.55;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:10,5:15:86.14:122,0,86
17    74222320    rs7210049    C    T    733.02    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=42;Dels=0.0;FS=5.518;HRun=2;HaplotypeScore=0.9997;MQ=59.13;MQ0=0;MQRankSum=1.156;QD=17.45;ReadPosRankSum=-0.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:18,24:42:99:763,0,588
17    74222490    rs6501868    A    G    2170.25    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=204;Dels=0.0;FS=1.859;HRun=0;HaplotypeScore=3.5564;MQ=59.57;MQ0=0;MQRankSum=1.031;QD=10.59;ReadPosRankSum=-0.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269391    GT:AD:DP:GQ:PL    0/1:108,94:204:99:2200,0,2702
17    74261677    rs2585751    T    C    165.31    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.144;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.337;QD=8.27;ReadPosRankSum=0.144;SNPEFF_AMINO_ACID_CHANGE=L31;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74261283_74261706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM100B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327490    GT:AD:DP:GQ:PL    0/1:10,9:20:99:195,0,249
17    74261929    rs71382201    A    G    71.85    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=10.26;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM100B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327490    GT:AD:DP:GQ:PL    0/1:2,5:7:21.98:102,0,22
17    74273165    rs164011    G    A    212.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.777;QD=15.21;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:7,7:14:99:243,0,206
17    74274998    rs347676    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
17    74275030    rs182972    T    C    31.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.39;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:3,2:5:61.96:62,0,107
17    74276067    rs164010    C    T    185.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=15;Dels=0.0;FS=6.803;HRun=0;HaplotypeScore=1.6498;MQ=58.45;MQ0=0;MQRankSum=0.412;QD=12.4;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:6,9:15:99:216,0,177
17    74283142    rs11271405    CACACACACACACACACACACACACACAT    C    430.90    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=232.8346;IndelType=D;MQ=47.78;MQ0=0;MQRankSum=-1.067;QD=47.88;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:2,7:9:99:470,0,505
17    74283253    rs8072620    A    G    420.42    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=1.303;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=56.12;MQ0=0;MQRankSum=-0.301;QD=18.28;ReadPosRankSum=-0.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:7,16:23:99:450,0,184
17    74283769    rs346785    T    C    180.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.02;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:4,6:10:99:210,0,120
17    74286082    rs4789273    C    T    592.62    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.477;DB;DP=69;Dels=0.0;FS=0.999;HRun=3;HaplotypeScore=0.9159;MQ=57.78;MQ0=0;MQRankSum=-0.478;QD=8.59;ReadPosRankSum=-0.021;SNPEFF_AMINO_ACID_CHANGE=E105;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74286073_74286158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447564    GT:AD:DP:GQ:PL    0/1:42,27:69:99:623,0,1187
17    74286106    rs4789274    C    T    674.80    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=1.218;DB;DP=64;Dels=0.0;FS=1.006;HRun=0;HaplotypeScore=1.8666;MQ=58.35;MQ0=0;MQRankSum=0.908;QD=10.54;ReadPosRankSum=-0.096;SNPEFF_AMINO_ACID_CHANGE=T1089;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74286073_74286158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:38,25:64:99:705,0,1061
17    74286173    rs17509527    A    G    451.50    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.243;DB;DP=39;Dels=0.0;FS=1.711;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.757;QD=11.58;ReadPosRankSum=-1.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:23,16:39:99:481,0,788
17    74287204    rs2279052    C    G    1551.24    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DB;DP=94;Dels=0.0;FS=0.781;HRun=0;HaplotypeScore=1.5661;MQ=59.36;MQ0=0;MQRankSum=0.595;QD=16.5;ReadPosRankSum=-0.87;SNPEFF_AMINO_ACID_CHANGE=E1036Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:41,53:94:99:1581,0,1180
17    74287389    rs2279053    T    C    543.79    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.913;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.716;QD=14.31;ReadPosRankSum=-0.43;SNPEFF_AMINO_ACID_CHANGE=H974R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:17,21:38:99:574,0,448
17    74287594    rs2279054    G    A    898.20    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=58;Dels=0.0;FS=1.108;HRun=0;HaplotypeScore=0.8667;MQ=59.6;MQ0=0;MQRankSum=1.579;QD=15.49;ReadPosRankSum=0.879;SNPEFF_AMINO_ACID_CHANGE=H906Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:28,30:58:99:928,0,812
17    74288262    rs3826286    T    C    491.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.354;DB;DP=49;Dels=0.0;FS=1.15;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.141;QD=10.02;ReadPosRankSum=0.758;SNPEFF_AMINO_ACID_CHANGE=H683R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:28,21:49:99:521,0,881
17    74288421    rs6501878    A    G    93.87    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=1.551;DB;DP=32;Dels=0.0;FS=3.407;HRun=0;HaplotypeScore=0.9578;MQ=57.2;MQ0=0;MQRankSum=0.042;QD=2.93;ReadPosRankSum=1.593;SNPEFF_AMINO_ACID_CHANGE=I630T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:23,9:32:99:124,0,679
17    74288422    rs6501879    T    C    86.07    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=34;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=0.9578;MQ=56.66;MQ0=0;MQRankSum=-1.657;QD=2.53;ReadPosRankSum=0.81;SNPEFF_AMINO_ACID_CHANGE=I630V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:23,11:34:99:116,0,659
17    74288502    rs143901735    T    C    670.15    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.546;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.863;QD=14.26;ReadPosRankSum=0.821;SNPEFF_AMINO_ACID_CHANGE=H603R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:25,22:47:99:700,0,744
17    74288564    rs35035566    CTGA    C    1296.15    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=6.146;DB;DP=55;FS=0.0;HRun=0;HaplotypeScore=248.2387;IndelType=D;MQ=57.58;MQ0=0;MQRankSum=0.605;QD=23.57;ReadPosRankSum=0.641;SNPEFF_AMINO_ACID_CHANGE=HQ581Q;SNPEFF_CODON_CHANGE=catcag/cag;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:24,31:55:99:1335,0,1316
17    74289500    rs3803737    G    A    569.58    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.769;QD=11.62;ReadPosRankSum=1.611;SNPEFF_AMINO_ACID_CHANGE=V270;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:30,19:49:99:600,0,917
17    74289705    rs6501880    A    G    574.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.657;DB;DP=35;Dels=0.0;FS=1.508;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=0.522;QD=16.43;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=L202S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:14,21:35:99:605,0,450
17    74289839    rs6501881    G    A    278.19    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.883;DB;DP=36;Dels=0.0;FS=5.488;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=7.73;ReadPosRankSum=1.063;SNPEFF_AMINO_ACID_CHANGE=G157;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:22,14:36:99:308,0,701
17    74289875    rs6501882    C    T    408.21    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.151;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.378;QD=12.76;ReadPosRankSum=-0.491;SNPEFF_AMINO_ACID_CHANGE=G145;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:17,15:32:99:438,0,574
17    74289908    rs6501883    A    G    372.25    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.78;DB;DP=36;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=3.4084;MQ=60.0;MQ0=0;MQRankSum=0.08;QD=10.34;ReadPosRankSum=0.016;SNPEFF_AMINO_ACID_CHANGE=S134;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:20,16:36:99:402,0,685
17    74290097    rs7225131    T    A    1033.82    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=17.23;ReadPosRankSum=0.581;SNPEFF_AMINO_ACID_CHANGE=S71;SNPEFF_CODON_CHANGE=tcA/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74287096_74290102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:26,34:60:99:1064,0,760
17    74301173    .    G    A    102.30    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=9.3;ReadPosRankSum=2.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QRICH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262765    GT:AD:DP:GQ:PL    0/1:7,4:11:99:132,0,243
17    74303370    rs443970    G    A    74.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324684    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
17    74307737    rs10459    T    C    725.93    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.775;QD=17.71;ReadPosRankSum=-0.775;SNPEFF_AMINO_ACID_CHANGE=Q245;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74307015_74307781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324684    GT:AD:DP:GQ:PL    0/1:18,23:41:99:756,0,593
17    74324729    rs346791    C    A    184.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.0;QD=15.34;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423915    GT:AD:DP:GQ:PL    0/1:5,7:12:99:214,0,174
17    74326553    rs449114    G    A    642.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=38;Dels=0.0;FS=10.473;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.759;QD=16.9;ReadPosRankSum=0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423915    GT:AD:DP:GQ:PL    0/1:19,19:38:99:672,0,570
17    74326556    rs399029    A    T    663.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=40;Dels=0.0;FS=6.287;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.23;QD=16.59;ReadPosRankSum=0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPSAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423915    GT:AD:DP:GQ:PL    0/1:20,20:40:99:694,0,614
17    74381555    rs2247856    G    A    31.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=7.93;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A30T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74381532_74381735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323374    GT:AD:DP:GQ:PL    0/1:2,2:4:60.71:62,0,61
17    74381567    rs346803    G    A    31.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=7.76;ReadPosRankSum=1.026;SNPEFF_AMINO_ACID_CHANGE=A34T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74381532_74381735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPHK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323374    GT:AD:DP:GQ:PL    0/1:2,2:4:61.01:61,0,64
17    74387284    rs3803739    C    T    628.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.582;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.717;QD=15.7;ReadPosRankSum=0.96;SNPEFF_AMINO_ACID_CHANGE=G1207S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74385614_74387694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2O;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319380    GT:AD:DP:GQ:PL    0/1:20,20:40:99:658,0,631
17    74398510    rs34234366    C    A    173.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.573;QD=19.26;ReadPosRankSum=1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2O;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319380    GT:AD:DP:GQ:PL    0/1:3,6:9:79.66:203,0,80
17    74398514    rs11652985    G    C    53.36    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=0.296;QD=5.34;ReadPosRankSum=-1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2O;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319380    GT:AD:DP:GQ:PL    0/1:7,3:10:83.36:83,0,219
17    74401405    rs11333686    AG    A    194.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=5;HaplotypeScore=33.0189;IndelType=D;MQ=60.94;MQ0=0;QD=19.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2O;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319380    GT:AD:DP:GQ:PL    1/1:2,8:10:21.03:237,21,0
17    74468552    rs12942767    A    G    592.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=28.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AANAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250615    GT:AD:DP:GQ:PL    1/1:0,21:21:51.12:626,51,0
17    74475024    rs3744045    G    A    697.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.84;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=P154L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74474888_74475091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389762    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:730,60,0
17    74475975    rs67160445    C    A    296.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_AMINO_ACID_CHANGE=A67S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74475815_74476023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313080    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:329,24,0
17    74476045    rs3826287    G    C    76.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313080    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
17    74477340    rs3826288    A    G    292.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313080    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
17    74527846    rs3217541    T    TG    311.60    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=14;FS=0.0;HRun=5;HaplotypeScore=42.4236;IndelType=I;MQ=61.53;MQ0=0;MQRankSum=-0.423;QD=22.26;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293230    GT:AD:DP:GQ:PL    0/1:4,10:14:57.61:351,0,58
17    74533347    rs9914096    T    C    39.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293230    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
17    74534650    rs9914222    G    T    82.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=11.82;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465808    GT:AD:DP:GQ:PL    0/1:2,4:7:67.41:113,0,67
17    74555106    rs4647885    T    C    2417.08    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.528;DB;DP=164;Dels=0.0;FS=1.334;HRun=0;HaplotypeScore=1.8947;MQ=59.86;MQ0=0;MQRankSum=-0.365;QD=14.74;ReadPosRankSum=0.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC090699.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493536    GT:AD:DP:GQ:PL    0/1:74,90:164:99:2447,0,2393
17    74557681    rs4510053    A    C    1896.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225276    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1929,147,0
17    74557803    rs77703506    GT    G    744.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=10;HaplotypeScore=111.6292;IndelType=D;MQ=60.24;MQ0=0;QD=19.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225276    GT:AD:DP:GQ:PL    1/1:7,31:39:91.99:787,92,0
17    74559287    rs4451979    T    C    99.55    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.928;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.12;MQ0=0;MQRankSum=1.443;QD=4.98;ReadPosRankSum=0.619;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225276    GT:AD:DP:GQ:PL    0/1:14,6:20:99:130,0,436
17    74563272    rs2120885    A    G    51.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC090699.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448136    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
17    74563653    rs2241918    A    G    1028.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=59.2;MQ0=0;QD=35.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC090699.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448136    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1061,78,0
17    74563706    rs60647948    A    G    406.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=33.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC090699.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448136    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:439,33,0
17    74569198    rs34207189    C    T    167.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225276    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
17    74570408    rs7207173    A    G    231.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225276    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:265,21,0
17    74582025    rs1867561    G    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_74581766_74582145;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225276    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    74621635    rs2286595    C    T    361.14    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.31;DB;DP=22;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=0.9998;MQ=58.95;MQ0=0;MQRankSum=0.746;QD=16.42;ReadPosRankSum=0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156626    GT:AD:DP:GQ:PL    0/1:10,12:22:99:391,0,241
17    74639530    rs719430    T    C    152.92    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.11;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST6GALNAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156626    GT:AD:DP:GQ:PL    0/1:3,5:8:99:183,0,101
17    74677156    rs11869629    C    T    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=22.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXRA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392488    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    74684080    rs2286589    G    A    65.17    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.15;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXRA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355797    GT:AD:DP:GQ:PL    0/1:5,3:8:95.16:95,0,160
17    74684598    rs4788942    C    T    353.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.523;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.817;QD=16.82;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXRA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355797    GT:AD:DP:GQ:PL    0/1:9,12:21:99:383,0,296
17    74684858    rs7219390    T    C    262.52    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.091;QD=12.5;ReadPosRankSum=1.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXRA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355797    GT:AD:DP:GQ:PL    0/1:11,10:21:99:293,0,386
17    74712886    rs1014390    G    A    454.92    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.853;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.648;QD=20.68;ReadPosRankSum=1.945;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303996    GT:AD:DP:GQ:PL    0/1:8,14:22:99:485,0,223
17    74716257    rs9908134    A    G    76.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344991    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
17    74716759    rs12943725    A    G    128.99    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=16.12;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344991    GT:AD:DP:GQ:PL    0/1:3,5:8:91.53:159,0,92
17    74716790    rs9915282    T    C    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344991    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    74719819    .    G    A    597.44    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=3.544;DP=34;Dels=0.0;FS=5.465;HRun=0;HaplotypeScore=0.9789;MQ=59.1;MQ0=0;MQRankSum=0.071;QD=17.57;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344991    GT:AD:DP:GQ:PL    0/1:13,21:34:99:627,0,346
17    74721488    rs36106744    C    CA    75.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.109;DB;DP=17;FS=0.0;HRun=22;HaplotypeScore=169.243;IndelType=I;MQ=42.6;MQ0=0;MQRankSum=-1.479;QD=4.44;ReadPosRankSum=-1.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JMJD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344991    GT:AD:DP:GQ:PL    1/1:8,5:17:8.90:117,9,0
17    74728938    rs4789351    C    T    455.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358156    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:488,36,0
17    74732507    rs237058    A    G    1144.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=V84A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74732236_74732527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452355    GT:AD:DP:GQ:PL    1/1:0,36:36:90.27:1178,90,0
17    74733099    rs237057    G    A    252.22    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=17;Dels=0.0;FS=2.796;HRun=0;HaplotypeScore=0.8941;MQ=57.23;MQ0=0;MQRankSum=1.905;QD=14.84;ReadPosRankSum=-1.27;SNPEFF_AMINO_ACID_CHANGE=D36;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74732881_74733292;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358156    GT:AD:DP:GQ:PL    0/1:7,10:17:99:282,0,208
17    74734323    rs237054    G    A    494.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317409    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:527,39,0
17    74734598    rs237053    C    T    117.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317409    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:150,12,0
17    74734642    rs62086784    T    C    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317409    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:70,0,33
17    74750215    rs11399997    C    CT    666.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=29.0409;IndelType=I;MQ=61.34;MQ0=0;QD=41.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336509    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:709,48,0
17    74750331    rs116719    C    T    169.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MFSD11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336509    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
17    74878259    rs571264    G    A    258.17    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=18;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=14.34;ReadPosRankSum=-0.251;SNPEFF_AMINO_ACID_CHANGE=V70I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_74878233_74878380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    0/1:7,11:18:99:288,0,158
17    74898930    rs7502593    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    74899234    rs568277    T    A    131.46    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=21.91;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    0/1:1,5:6:14.46:161,0,14
17    74899320    rs567361    G    C    311.31    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.78;MQ0=0;MQRankSum=-0.702;QD=16.38;ReadPosRankSum=-2.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    0/1:8,11:19:99:341,0,228
17    74902358    rs3803742    C    T    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
17    74920957    rs3889146    G    T    1070.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1104,84,0
17    74922578    rs12453844    T    C    108.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=21.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:141,12,0
17    74922636    rs12450749    G    A    274.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.87;MQ0=0;QD=24.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:308,24,0
17    74922652    rs11653088    C    T    305.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=27.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:339,27,0
17    74928528    rs1562084    A    C    178.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:211,15,0
17    74928565    rs1562085    A    G    166.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:199,18,0
17    74929596    rs2166086    T    C    141.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:174,15,0
17    74936429    rs920851    T    C    1085.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,32:32:81.27:1119,81,0
17    74944709    rs9894270    T    C    305.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:339,24,0
17    74944714    rs57502449    C    G    353.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MGAT5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301618    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:387,30,0
17    75085226    rs67134689    TC    T    183.34    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=18;FS=0.0;HRun=5;HaplotypeScore=91.0496;IndelType=D;MQ=59.32;MQ0=0;MQRankSum=1.01;QD=10.19;ReadPosRankSum=-0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:10,8:18:96.84:222,0,97
17    75085230    rs9900566    C    G    288.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.935;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.914;QD=16.01;ReadPosRankSum=0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    1/1:8,10:18:27.07:321,27,0
17    75085260    rs2247814    C    G    170.72    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.592;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.94;QD=8.99;ReadPosRankSum=-0.206;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_75085235_75085353;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:11,8:19:99:201,0,399
17    75085329    rs16969660    G    T    1091.07    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=4.109;DB;DP=82;Dels=0.0;FS=8.993;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=1.687;QD=13.31;ReadPosRankSum=0.634;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_75085235_75085353;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:45,37:82:99:1121,0,1253
17    75085434    rs2678770    G    A    1369.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=100;Dels=0.0;FS=3.857;HRun=0;HaplotypeScore=1.5774;MQ=59.54;MQ0=0;MQRankSum=-0.423;QD=13.69;ReadPosRankSum=-0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:50,50:100:99:1399,0,1454
17    75085654    rs16969661    A    G    225.33    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=17.33;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:6,7:13:99:255,0,198
17    75190846    rs673918    A    C    2391.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=34.66;SNPEFF_AMINO_ACID_CHANGE=T154P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_75190759_75190993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431431    GT:AD:DP:GQ:PL    1/1:0,68:69:99:2425,187,0
17    75190962    rs674402    C    T    807.09    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.738;DB;DP=58;Dels=0.0;FS=5.265;HRun=0;HaplotypeScore=1.7825;MQ=60.0;MQ0=0;MQRankSum=-0.468;QD=13.92;ReadPosRankSum=0.205;SNPEFF_AMINO_ACID_CHANGE=S192;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_75190759_75190993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431431    GT:AD:DP:GQ:PL    0/1:32,26:58:99:837,0,780
17    75192164    rs9675109    C    T    106.97    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=15.28;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:2,5:7:66.82:137,0,67
17    75203092    rs7226135    C    T    108.18    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=15.45;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:2,5:7:65.82:138,0,66
17    75207966    rs2280269    A    G    853.89    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=44;Dels=0.0;FS=4.255;HRun=1;HaplotypeScore=0.7887;MQ=59.05;MQ0=0;MQRankSum=-0.322;QD=19.41;ReadPosRankSum=0.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:18,26:44:99:884,0,584
17    75212335    rs147840397    C    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    75212475    rs112321615    G    T    178.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.098;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9681;MQ=58.55;MQ0=0;MQRankSum=-0.683;QD=11.13;ReadPosRankSum=-1.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392476    GT:AD:DP:GQ:PL    0/1:8,8:16:99:208,0,289
17    75303298    rs4789439    T    C    760.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397613    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:793,60,0
17    75316497    rs3760143    C    T    378.21    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.884;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.085;QD=16.44;ReadPosRankSum=-0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:10,13:23:99:408,0,298
17    75398498    rs34587622    C    T    256.69    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.6;QD=18.34;ReadPosRankSum=0.667;SNPEFF_AMINO_ACID_CHANGE=P127L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_75398141_75398785;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:5,9:14:99:287,0,133
17    75478481    rs425139    C    T    408.06    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.595;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.76;MQ0=0;MQRankSum=0.069;QD=12.0;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:19,15:34:99:438,0,556
17    75484156    rs441670    C    T    75.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.02;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:2,3:5:64.58:105,0,65
17    75484200    rs35261301    TC    T    122.29    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;FS=0.0;HRun=3;HaplotypeScore=42.6147;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.198;QD=15.29;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:3,5:8:65.40:161,0,65
17    75484700    rs378578    A    G    390.69    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.027;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.54;QD=21.7;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:4,14:18:99:421,0,109
17    75484781    rs370531    T    C    992.27    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.824;DB;DP=65;Dels=0.0;FS=1.281;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.707;QD=15.27;ReadPosRankSum=-0.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:28,37:65:99:1022,0,814
17    75485014    rs426885    A    C    187.55    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.449;QD=9.87;ReadPosRankSum=-0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:9,10:19:99:218,0,302
17    75488973    rs2627198    C    T    77.30    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.46;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329047    GT:AD:DP:GQ:PL    0/1:1,4:5:30.61:107,0,31
17    75494705    rs2627223    A    G    318.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.96;MQ0=0;QD=28.96;SNPEFF_AMINO_ACID_CHANGE=M325V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_75494605_75496674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431235    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:352,30,0
17    75494746    rs1059485    A    G    192.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397613    GT:AD:DP:GQ:PL    1/1:0,9:10:21.01:225,21,0
17    75494787    rs111987831    T    TC    131.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=8;HaplotypeScore=33.6529;IndelType=I;MQ=44.98;MQ0=0;QD=18.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397613    GT:AD:DP:GQ:PL    1/1:2,5:7:15.04:173,15,0
17    75495397    rs9038    T    C    454.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_AMINO_ACID_CHANGE=W134R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_75495397_75496674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543686    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:487,36,0
17    76046623    rs71385927    G    A    1482.43    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.56;MQ0=0;MQRankSum=0.447;QD=15.6;ReadPosRankSum=-0.545;SNPEFF_AMINO_ACID_CHANGE=D494N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76044926_76047538;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301624    GT:AD:DP:GQ:PL    0/1:45,50:95:99:1512,0,1347
17    76114941    rs2613519    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306591    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    76115181    rs2252496    A    T    78.59    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306591    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:109,0,67
17    76115353    rs2748428    T    C    908    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=3.3;DB;DP=71;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=1.7987;MQ=59.68;MQ0=0;MQRankSum=1.859;QD=12.79;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306591    GT:AD:DP:GQ:PL    0/1:33,37:71:99:938,0,886
17    76118453    rs3818147    G    C    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306591    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    76119930    rs55677349    T    C    56.67    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=11.33;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306591    GT:AD:DP:GQ:PL    0/1:2,3:5:60.23:87,0,60
17    76120065    rs2613522    A    G    330.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.236;DB;DP=24;Dels=0.0;FS=1.603;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.787;QD=13.78;ReadPosRankSum=0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306591    GT:AD:DP:GQ:PL    0/1:9,15:24:99:361,0,309
17    76128360    rs2221636    G    A    52.52    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.66;MQ0=0;MQRankSum=0.248;QD=5.25;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322914    GT:AD:DP:GQ:PL    0/1:7,3:10:82.51:83,0,164
17    76128386    rs1354985    G    C    257.39    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.393;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.581;MQ=57.66;MQ0=0;MQRankSum=-1.044;QD=25.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322914    GT:AD:DP:GQ:PL    0/1:1,9:10:14.67:287,0,15
17    76128662    rs1396149    G    C    276.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:310,24,0
17    76129034    rs60591028    C    T    69.21    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=59.46;MQ0=0;MQRankSum=-1.02;QD=4.07;ReadPosRankSum=-0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    0/1:11,6:17:99:99,0,398
17    76129360    rs9889313    C    T    342.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.515;QD=19.02;ReadPosRankSum=-0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    0/1:6,12:18:99:372,0,196
17    76129636    rs417780    T    C    333.15    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.279;DB;DP=23;Dels=0.0;FS=2.048;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.519;QD=14.48;ReadPosRankSum=0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    0/1:10,13:23:99:363,0,303
17    76130575    rs7208422    A    T    311.74    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=35;Dels=0.0;FS=5.287;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.822;QD=8.91;ReadPosRankSum=1.172;SNPEFF_AMINO_ACID_CHANGE=N306I;SNPEFF_CODON_CHANGE=aAc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76130475_76130645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318430    GT:AD:DP:GQ:PL    0/1:20,15:35:99:342,0,613
17    76130947    rs62079073    G    T    266.45    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.975;DB;DP=33;Dels=0.0;FS=3.326;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.692;QD=8.07;ReadPosRankSum=0.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    0/1:21,12:33:99:296,0,600
17    76131070    rs12452890    G    A    1273.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_AMINO_ACID_CHANGE=E369;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76130951_76131090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318430    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1306,99,0
17    76133693    rs55694641    C    T    420.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:453,36,0
17    76133746    rs12449680    A    G    776.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:809,63,0
17    76134828    rs7221365    C    A    953.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=A269;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76134690_76134885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:986,72,0
17    76135412    rs17773854    G    T    186.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:219,18,0
17    76137198    rs369764    T    G    382.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    1/1:0,16:16:33.09:415,33,0
17    76137337    rs454138    C    G    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301627    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    76143009    rs7217374    G    A    94.62    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=10;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=9.46;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318430    GT:AD:DP:GQ:PL    0/1:3,7:10:99:125,0,103
17    76156983    rs62079086    T    C    260.40    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=21;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.76;QD=12.4;ReadPosRankSum=0.608;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340363    GT:AD:DP:GQ:PL    0/1:11,9:21:99:290,0,305
17    76157266    rs4071641    T    C    545.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=28.71;SNPEFF_AMINO_ACID_CHANGE=W101R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76157036_76157335;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340363    GT:AD:DP:GQ:PL    1/1:0,18:19:48.12:578,48,0
17    76157348    rs12951279    G    A    103.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=14.84;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340363    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,104
17    76162134    rs3644    C    T    67.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.46;ReadPosRankSum=-0.322;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225777    GT:AD:DP:GQ:PL    0/1:5,3:8:97.67:98,0,160
17    76166689    rs4583318    C    A    248.70    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.355;QD=15.54;ReadPosRankSum=-0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340363    GT:AD:DP:GQ:PL    0/1:6,10:16:99:279,0,203
17    76167047    rs1062668    C    T    508.28    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.73;DB;DP=41;Dels=0.0;FS=2.693;HRun=2;HaplotypeScore=0.9894;MQ=57.71;MQ0=0;MQRankSum=-0.701;QD=12.4;ReadPosRankSum=0.175;SNPEFF_AMINO_ACID_CHANGE=A83;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76166898_76167135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNGR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000225777    GT:AD:DP:GQ:PL    0/1:21,20:41:99:538,0,640
17    76170830    rs1065768    C    T    222.69    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=9;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=55.19;MQ0=0;MQRankSum=-0.747;QD=24.74;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000225777    GT:AD:DP:GQ:PL    0/1:2,7:9:12.05:253,0,12
17    76178748    rs1143697    T    C    321.36    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=24;Dels=0.0;FS=5.651;HRun=0;HaplotypeScore=0.9999;MQ=59.03;MQ0=0;MQRankSum=0.429;QD=13.39;ReadPosRankSum=0.033;SNPEFF_AMINO_ACID_CHANGE=A75;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76178670_76178763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301634    GT:AD:DP:GQ:PL    0/1:11,13:24:99:351,0,254
17    76210367    rs9904341    G    C    430.76    PASS    AB=0.176;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.238;DB;DP=17;Dels=0.0;FS=9.031;HRun=1;HaplotypeScore=0.0;MQ=55.8;MQ0=0;MQRankSum=-1.032;QD=25.34;ReadPosRankSum=1.508;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_76210277_76210508;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301633    GT:AD:DP:GQ:PL    0/1:3,14:17:30.13:461,0,30
17    76219591    rs2071214    G    A    1062.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=E129K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76219546_76221715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350051    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1096,81,0
17    76233906    rs1109627    C    T    271.40    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.569;DB;DP=24;Dels=0.0;FS=4.993;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.877;QD=11.31;ReadPosRankSum=0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM235;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374946    GT:AD:DP:GQ:PL    0/1:13,11:24:99:301,0,439
17    76267843    rs872359    G    A    222.71    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=14;Dels=0.0;FS=2.027;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.91;ReadPosRankSum=1.625;SNPEFF_AMINO_ACID_CHANGE=R58W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76267333_76268048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC087645.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374945    GT:AD:DP:GQ:PL    0/1:6,8:14:99:253,0,185
17    76394195    rs2292645    T    C    145.20    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=17;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.898;QD=8.54;ReadPosRankSum=1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:11,6:17:99:175,0,357
17    76395634    rs2292641    C    T    492.79    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.507;DB;DP=38;Dels=0.0;FS=1.378;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.046;QD=12.97;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:18,20:38:99:523,0,545
17    76397176    rs9891030    G    A    304.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.102;QD=14.49;ReadPosRankSum=-0.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:9,12:21:99:334,0,207
17    76400251    rs3744218    C    G    71.26    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:1,3:4:23.22:101,0,23
17    76410871    rs3744216    G    A    370.98    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=19;Dels=0.0;FS=7.858;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.867;QD=19.53;ReadPosRankSum=2.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:8,11:19:99:401,0,176
17    76411154    rs3833108    T    TG    119.30    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=16;FS=0.0;HRun=5;HaplotypeScore=33.9344;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.46;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:11,5:16:99:158,0,219
17    76419882    rs72903323    G    A    497.17    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=4.595;DB;DP=36;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.581;MQ=60.0;MQ0=0;MQRankSum=1.616;QD=13.81;ReadPosRankSum=0.665;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470235    GT:AD:DP:GQ:PL    0/1:19,17:36:99:527,0,501
17    76420373    rs12942703    G    A    82.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470235    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:115,9,0
17    76421360    rs72100001    TTTATC    T    1324.16    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=5.354;DB;DP=58;FS=1.919;HRun=0;HaplotypeScore=315.0293;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=-0.408;QD=22.83;ReadPosRankSum=0.518;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470235    GT:AD:DP:GQ:PL    0/1:33,25:58:99:1363,0,2884
17    76421464    rs35422926    C    T    1272.52    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.484;DB;DP=116;Dels=0.0;FS=4.652;HRun=0;HaplotypeScore=0.9999;MQ=58.39;MQ0=0;MQRankSum=0.32;QD=10.97;ReadPosRankSum=0.182;SNPEFF_AMINO_ACID_CHANGE=P4363;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76421427_76421652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:63,53:116:99:1303,0,1716
17    76421467    rs36119275    A    G    1169.14    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.773;DB;DP=117;Dels=0.0;FS=0.718;HRun=2;HaplotypeScore=1.832;MQ=58.41;MQ0=0;MQRankSum=-0.844;QD=9.99;ReadPosRankSum=0.797;SNPEFF_AMINO_ACID_CHANGE=P4362;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76421427_76421652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:66,50:117:99:1199,0,1989
17    76422372    rs72914882    T    C    40.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:71,0,26
17    76422473    rs4969188    T    C    186.10    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=18.61;ReadPosRankSum=-2.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:3,7:10:86.26:216,0,86
17    76422815    rs72914883    A    G    208.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.153;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.788;QD=13.06;ReadPosRankSum=0.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:8,8:16:99:239,0,270
17    76422872    rs72914885    A    C    108.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.56;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:4,4:8:99:139,0,143
17    76422903    rs72914887    A    G    143.61    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=17.95;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:3,5:8:96.90:174,0,97
17    76422933    rs72914891    G    C    70.82    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.12;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,135
17    76423097    rs2271613    G    A    845.75    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.798;DB;DP=49;Dels=0.0;FS=1.129;HRun=0;HaplotypeScore=1.7886;MQ=59.53;MQ0=0;MQRankSum=-1.081;QD=17.26;ReadPosRankSum=-0.879;SNPEFF_AMINO_ACID_CHANGE=Y4222;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76423007_76423189;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:21,28:49:99:876,0,637
17    76424942    rs691113    T    C    261.76    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.464;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=55.57;MQ0=0;MQRankSum=0.439;QD=13.78;ReadPosRankSum=1.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:7,11:19:99:292,0,240
17    76425176    rs691094    G    A    362.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=51;Dels=0.0;FS=1.275;HRun=1;HaplotypeScore=0.9983;MQ=56.46;MQ0=0;MQRankSum=1.362;QD=7.1;ReadPosRankSum=-1.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:34,17:51:99:392,0,1112
17    76425480    rs666463    A    T    110.72    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=13.84;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:3,5:8:96.46:141,0,96
17    76425490    rs1709752    T    C    46.57    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:1,3:4:29.21:77,0,29
17    76425491    rs1709751    G    A    46.57    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262764    GT:AD:DP:GQ:PL    0/1:1,3:4:29.21:77,0,29
17    76433685    rs2289757    A    G    236.47    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.296;QD=21.5;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:2,9:11:52.90:266,0,53
17    76433898    rs12941494    T    C    855.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_AMINO_ACID_CHANGE=H3947R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76433723_76433950;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    1/1:0,34:34:81.11:888,81,0
17    76433899    rs61742072    G    A    352.93    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=32;Dels=0.0;FS=3.312;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.302;QD=11.03;ReadPosRankSum=0.264;SNPEFF_AMINO_ACID_CHANGE=H3947Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76433723_76433950;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:15,17:32:99:383,0,356
17    76435421    rs77752353    A    G    72.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=8.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:5,4:9:99:102,0,180
17    76435448    rs12150123    C    T    72.05    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=9.01;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,143
17    76441911    rs182583617    C    T    40.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:71,0,30
17    76446689    rs676696    A    G    437.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:470,36,0
17    76446872    rs35957404    A    G    992.14    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.847;DB;DP=79;Dels=0.0;FS=3.228;HRun=0;HaplotypeScore=0.9933;MQ=58.82;MQ0=0;MQRankSum=-0.229;QD=12.56;ReadPosRankSum=0.112;SNPEFF_AMINO_ACID_CHANGE=D3583;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76446764_76446928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:44,35:79:99:1022,0,1263
17    76449505    rs2289751    G    C    498.12    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.663;DB;DP=49;Dels=0.0;FS=1.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.332;QD=10.17;ReadPosRankSum=-0.854;SNPEFF_AMINO_ACID_CHANGE=T3469;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76449425_76449547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:27,22:49:99:528,0,883
17    76451921    rs8069561    A    G    2452.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2485,187,0
17    76455218    rs2289754    G    A    1548.72    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.36;DB;DP=109;Dels=0.0;FS=8.549;HRun=1;HaplotypeScore=0.8321;MQ=59.32;MQ0=0;MQRankSum=0.891;QD=14.21;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=C3228;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76455083_76455290;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:52,56:109:99:1579,0,1434
17    76456135    rs2289756    G    A    350.70    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.38;MQ0=0;MQRankSum=0.927;QD=13.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:11,15:26:99:381,0,351
17    76456352    rs623336    T    C    260.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:293,24,0
17    76457559    rs692529    T    G    157.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
17    76457910    rs640292    G    C    268.38    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.065;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=14.91;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:8,10:18:99:298,0,272
17    76458855    rs56027941    G    C    461.30    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.639;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.3;MQ0=0;MQRankSum=-0.342;QD=13.98;ReadPosRankSum=-1.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:16,17:33:99:491,0,520
17    76462770    rs691225    G    A    498.91    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.968;DB;DP=52;Dels=0.0;FS=2.498;HRun=0;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=-0.39;QD=9.59;ReadPosRankSum=-0.523;SNPEFF_AMINO_ACID_CHANGE=S2955;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76462737_76462898;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:30,22:52:99:529,0,796
17    76471366    rs61746438    G    A    965.81    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=89;Dels=0.0;FS=0.874;HRun=0;HaplotypeScore=2.101;MQ=59.48;MQ0=0;MQRankSum=0.653;QD=10.85;ReadPosRankSum=-1.711;SNPEFF_AMINO_ACID_CHANGE=D2821;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76471360_76471551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:52,37:89:99:996,0,1649
17    76471679    rs999430    G    A    524.75    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=34;Dels=0.0;FS=1.441;HRun=0;HaplotypeScore=0.8321;MQ=59.32;MQ0=0;MQRankSum=-0.659;QD=15.43;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:15,19:34:99:555,0,469
17    76472574    rs7405804    G    A    402.22    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=23;Dels=0.0;FS=7.499;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.767;QD=17.49;ReadPosRankSum=1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:10,13:23:99:432,0,276
17    76472768    rs7405830    G    A    2516.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_AMINO_ACID_CHANGE=L2666;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76472654_76472815;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2549,190,0
17    76472855    rs4969207    C    T    1742.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1776,132,0
17    76475067    rs56372780    A    G    1527.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.37;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1560,120,0
17    76475809    rs28454411    T    C    423.19    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.084;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9633;MQ=59.41;MQ0=0;MQRankSum=-0.92;QD=10.85;ReadPosRankSum=0.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:22,17:39:99:453,0,788
17    76477068    rs2014862    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    76481180    rs74001373    G    A    305.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.191;DB;DP=30;Dels=0.0;FS=5.932;HRun=1;HaplotypeScore=1.7608;MQ=57.31;MQ0=0;MQRankSum=0.656;QD=10.17;ReadPosRankSum=0.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:18,12:30:99:335,0,606
17    76481608    rs11077370    A    G    348.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5983;MQ=50.49;MQ0=0;QD=16.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,21:21:36.04:382,36,0
17    76481693    rs11872051    C    G    583.78    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=53;Dels=0.0;FS=1.143;HRun=1;HaplotypeScore=0.8321;MQ=55.49;MQ0=0;MQRankSum=0.066;QD=11.01;ReadPosRankSum=-0.764;SNPEFF_AMINO_ACID_CHANGE=T2460;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76481632_76481839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:24,29:53:99:614,0,627
17    76481997    rs12944880    T    C    590.39    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=0.823;DB;DP=37;Dels=0.0;FS=1.619;HRun=2;HaplotypeScore=0.0;MQ=57.98;MQ0=0;MQRankSum=0.263;QD=15.96;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:13,24:37:99:620,0,435
17    76482256    rs691142    A    G    1804.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1837,144,0
17    76482432    rs691151    A    G    1260.26    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.984;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9363;MQ=59.77;MQ0=0;MQRankSum=-0.882;QD=12.6;ReadPosRankSum=-0.676;SNPEFF_AMINO_ACID_CHANGE=I2311;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76482306_76482588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:51,49:100:99:1290,0,1644
17    76482435    rs61743860    C    T    1580.65    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.873;DB;DP=102;Dels=0.0;FS=0.762;HRun=1;HaplotypeScore=1.9363;MQ=59.77;MQ0=0;MQRankSum=0.479;QD=15.5;ReadPosRankSum=0.187;SNPEFF_AMINO_ACID_CHANGE=T2310;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76482306_76482588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:48,54:102:99:1611,0,1377
17    76486569    rs691279    T    C    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
17    76486579    rs677280    T    C    36.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.22;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:67,0,34
17    76487348    rs690993    T    C    81.22    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.31;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:1,3:4:9.65:111,0,10
17    76490083    rs691912    G    A    167.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.339;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.663;QD=11.98;ReadPosRankSum=1.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:7,7:14:99:198,0,197
17    76491127    rs691652    T    C    1044.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_AMINO_ACID_CHANGE=M1972V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76491041_76491179;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    1/1:0,30:30:84.26:1077,84,0
17    76491128    rs606944    G    C    1056.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=L1971;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76491041_76491179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1089,84,0
17    76491194    rs11077375    G    A    149.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.098;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=14.92;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:5,5:10:99:179,0,140
17    76491211    rs11077376    G    A    59.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.5;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:4,3:7:89.46:89,0,101
17    76491309    rs595711    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    76495050    rs691291    C    T    920.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.48;MQ0=0;QD=32.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464366    GT:AD:DP:GQ:PL    1/1:0,28:28:75.19:954,75,0
17    76496350    rs35901117    A    C    58.64    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.386;QD=4.51;ReadPosRankSum=1.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464366    GT:AD:DP:GQ:PL    0/1:9,4:13:88.63:89,0,333
17    76496361    rs34124297    C    G    123.55    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=1.092;QD=9.5;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464366    GT:AD:DP:GQ:PL    0/1:8,5:13:99:154,0,288
17    76496492    rs2028734    A    G    493.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.83;SNPEFF_AMINO_ACID_CHANGE=P1831;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76496387_76496543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:526,45,0
17    76496577    rs2028735    C    T    492.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464366    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:526,39,0
17    76497100    rs4969139    T    C    96.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464366    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
17    76497114    rs691127    A    G    83.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464366    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
17    76497340    .    G    A    670.94    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.808;DP=47;Dels=0.0;FS=1.157;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.243;QD=14.28;ReadPosRankSum=0.441;SNPEFF_AMINO_ACID_CHANGE=C1789;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76497266_76497426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:21,25:47:99:701,0,608
17    76497778    rs671899    T    C    530.08    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.514;DB;DP=49;Dels=0.0;FS=3.514;HRun=0;HaplotypeScore=3.1036;MQ=59.05;MQ0=0;MQRankSum=0.683;QD=10.82;ReadPosRankSum=-0.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464366    GT:AD:DP:GQ:PL    0/1:27,19:49:99:560,0,774
17    76497920    rs690844    C    A    2235.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=M1731I;SNPEFF_CODON_CHANGE=atG/atT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76497833_76497955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2269,178,0
17    76498692    rs930571    C    T    3527.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=R1713K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76498673_76498759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3528,265,0
17    76498844    rs7218164    A    G    487.82    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=44;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=0.0;MQ=58.51;MQ0=0;MQRankSum=0.53;QD=11.09;ReadPosRankSum=0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:24,20:44:99:518,0,750
17    76501112    rs9905457    C    T    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    76502615    rs6501225    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    76502634    rs6501226    G    A    77.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.49;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:2,3:5:67.19:107,0,67
17    76502734    rs11077378    T    C    89.52    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=2.321;DB;DP=17;Dels=0.0;FS=10.055;HRun=0;HaplotypeScore=0.8941;MQ=58.63;MQ0=0;MQRankSum=0.736;QD=5.27;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:13,4:17:99:120,0,373
17    76503527    rs9894913    G    A    860.64    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=64;Dels=0.0;FS=0.998;HRun=0;HaplotypeScore=0.9578;MQ=58.91;MQ0=0;MQRankSum=0.37;QD=13.45;ReadPosRankSum=1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:30,34:64:99:891,0,968
17    76503593    rs9896398    T    C    544.10    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DB;DP=67;Dels=0.0;FS=1.034;HRun=0;HaplotypeScore=2.3548;MQ=58.96;MQ0=0;MQRankSum=0.391;QD=8.12;ReadPosRankSum=-1.539;SNPEFF_AMINO_ACID_CHANGE=T1507A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76503540_76503887;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:39,28:67:99:574,0,1124
17    76503624    rs626439    C    T    943.93    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.699;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8608;MQ=59.57;MQ0=0;MQRankSum=-1.196;QD=17.48;ReadPosRankSum=-0.086;SNPEFF_AMINO_ACID_CHANGE=E1496;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76503540_76503887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389840    GT:AD:DP:GQ:PL    0/1:22,32:54:99:974,0,628
17    76503966    rs9902653    T    C    103.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=25.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:136,12,0
17    76506607    rs867654    G    A    1235.53    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=1.355;DB;DP=75;Dels=0.0;FS=0.962;HRun=1;HaplotypeScore=2.8768;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=16.47;ReadPosRankSum=0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:32,43:75:99:1266,0,1090
17    76525475    rs884714    T    G    698.21    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=2.129;QD=11.64;ReadPosRankSum=-0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:35,25:60:99:728,0,1198
17    76525565    rs4273108    A    G    1380.09    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.203;DB;DP=129;Dels=0.0;FS=8.295;HRun=1;HaplotypeScore=1.9886;MQ=59.61;MQ0=0;MQRankSum=-1.225;QD=10.7;ReadPosRankSum=-0.203;SNPEFF_AMINO_ACID_CHANGE=L1163;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76525554_76525776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:75,54:129:99:1410,0,2369
17    76525759    rs61741523    G    C    775.73    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.086;DB;DP=68;Dels=0.0;FS=4.165;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.292;QD=11.41;ReadPosRankSum=0.219;SNPEFF_AMINO_ACID_CHANGE=A1098G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76525554_76525776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:38,29:68:99:806,0,1220
17    76525805    rs4969212    C    G    334.10    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.012;DB;DP=44;Dels=0.0;FS=11.566;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.012;QD=7.59;ReadPosRankSum=-1.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:26,18:44:99:364,0,796
17    76525864    rs4597380    G    A    180.99    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.63;DB;DP=18;Dels=0.0;FS=3.039;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.996;QD=10.06;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:11,7:18:99:211,0,359
17    76525901    rs4246439    T    C    79.42    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=6.11;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:8,5:13:99:109,0,282
17    76526299    rs35958590    G    A    41.64    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:72,0,23
17    76535759    rs7220871    T    C    359.23    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.055;QD=21.13;ReadPosRankSum=-0.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460042    GT:AD:DP:GQ:PL    0/1:6,11:17:99:389,0,187
17    76535948    rs7221209    T    C    978.34    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=2.908;DB;DP=55;Dels=0.0;FS=4.189;HRun=0;HaplotypeScore=0.7887;MQ=59.66;MQ0=0;MQRankSum=0.48;QD=17.79;ReadPosRankSum=1.273;SNPEFF_AMINO_ACID_CHANGE=L849;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76535828_76535962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:26,29:55:99:1008,0,796
17    76554114    rs62075923    A    G    610.43    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.451;DB;DP=47;Dels=0.0;FS=4.623;HRun=0;HaplotypeScore=0.9578;MQ=59.51;MQ0=0;MQRankSum=-0.253;QD=12.99;ReadPosRankSum=-0.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:25,22:47:99:640,0,713
17    76554147    rs4969171    A    G    650.67    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.782;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.65;MQ0=0;MQRankSum=0.682;QD=9.86;ReadPosRankSum=0.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:38,28:66:99:681,0,1096
17    76556570    rs56320319    C    A    36.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
17    76557659    rs1108365    T    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    76557862    rs894966    T    C    1078.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_AMINO_ACID_CHANGE=K590;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76557797_76558062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,29:29:84.27:1112,84,0
17    76558159    rs2376587    T    C    368.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:401,33,0
17    76565341    rs72920970    G    A    443.30    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.693;DB;DP=40;Dels=0.0;FS=1.342;HRun=1;HaplotypeScore=0.9332;MQ=58.84;MQ0=0;MQRankSum=-0.557;QD=11.08;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:22,18:40:99:473,0,676
17    76567013    rs12948559    C    T    268.60    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.27;MQ0=0;MQRankSum=-0.551;QD=7.46;ReadPosRankSum=0.647;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:26,10:36:99:299,0,548
17    76567332    rs12949510    C    A    140.39    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=12.76;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:6,5:11:99:170,0,214
17    76567707    rs894968    T    C    704.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.36;SNPEFF_AMINO_ACID_CHANGE=T233A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76567672_76567864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    1/1:0,24:24:60.15:738,60,0
17    76567883    rs4969148    G    C    248.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.318;DB;DP=27;Dels=0.0;FS=4.661;HRun=0;HaplotypeScore=0.9789;MQ=59.14;MQ0=0;MQRankSum=-0.61;QD=9.19;ReadPosRankSum=-0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:15,12:27:99:278,0,446
17    76567910    rs4969149    G    A    185.72    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=18;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.111;QD=10.32;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:10,8:18:99:216,0,319
17    76569056    rs12951733    G    T    38.35    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=3.83;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:7,3:10:68.34:68,0,240
17    76570771    rs12946156    G    A    396.33    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.566;DB;DP=29;Dels=0.0;FS=6.551;HRun=0;HaplotypeScore=2.9459;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=13.67;ReadPosRankSum=-1.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:16,13:29:99:426,0,402
17    76571269    rs9903478    A    C    66.12    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.45;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DNAH17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300671    GT:AD:DP:GQ:PL    0/1:3,4:7:96.11:96,0,105
17    76672002    rs1126607    T    C    621.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262763    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:655,51,0
17    76692298    rs922838    G    C    36.57    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=9.14;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416418    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:67,0,31
17    76794774    rs3744799    T    C    599.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312010    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:633,54,0
17    76794981    rs2279308    A    G    2009.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312010    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2042,165,0
17    76798362    rs2306526    C    T    80.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432878    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
17    76798548    rs3830256    TTTTTTC    T    969.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=151.9344;IndelType=D;MQ=42.82;MQ0=0;QD=42.16;SNPEFF_AMINO_ACID_CHANGE=KKK563K;SNPEFF_CODON_CHANGE=aagaaaaaa/aaa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_17_76798406_76798617;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449938    GT:AD:DP:GQ:PL    1/1:5,18:23:54.18:1012,54,0
17    76799795    rs1057040    G    A    838.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=38.1;SNPEFF_AMINO_ACID_CHANGE=R828C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76799467_76800060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312010    GT:AD:DP:GQ:PL    1/1:0,22:22:66.19:871,66,0
17    76799860    rs3088040    T    C    833.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=30.87;SNPEFF_AMINO_ACID_CHANGE=Q806R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76799467_76800060;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312010    GT:AD:DP:GQ:PL    1/1:0,27:27:69.19:867,69,0
17    76799898    rs9302885    A    G    1033.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=S793;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76799467_76800060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312010    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1066,81,0
17    76808773    rs7220532    T    C    89.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.51;MQ0=0;QD=22.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312010    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:122,12,0
17    76817090    rs3744793    C    T    337.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=V271I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76817073_76817143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312010    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:370,27,0
17    76832133    rs900349    T    C    1114.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.09;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312010    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1147,87,0
17    76852097    rs8176329    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262768    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    76867185    rs55743137    G    T    128.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262768    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
17    76897733    rs12941365    G    T    39.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.88;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC100788.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322630    GT:AD:DP:GQ:PL    0/1:3,2:5:69.42:69,0,96
17    76897974    rs4789936    C    T    81.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=56.04;MQ0=0;MQRankSum=0.536;QD=6.79;ReadPosRankSum=-1.134;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_17_76897867_76898008;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC100788.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322630    GT:AD:DP:GQ:PL    0/1:8,4:12:99:111,0,235
17    76970879    rs3744166    A    G    708.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS3BP;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000536190    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:742,57,0
17    76973249    rs55974249    C    T    372.32    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.441;DB;DP=28;Dels=0.0;FS=1.637;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.507;QD=13.3;ReadPosRankSum=-0.967;SNPEFF_AMINO_ACID_CHANGE=V9M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_76973222_76973296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS3BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262776    GT:AD:DP:GQ:PL    0/1:13,15:28:99:402,0,429
17    77040185    rs4789853    G    C    294.15    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.755;DB;DP=19;Dels=0.0;FS=2.35;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.286;QD=15.48;ReadPosRankSum=2.245;SNPEFF_AMINO_ACID_CHANGE=S45;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77040037_77040205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339142    GT:AD:DP:GQ:PL    0/1:9,10:19:99:324,0,288
17    77071002    rs8076010    C    G    62.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.93;ReadPosRankSum=-0.937;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:4,3:7:92.51:93,0,137
17    77073647    rs62063817    T    C    439.34    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.16;DB;DP=48;Dels=0.0;FS=6.36;HRun=4;HaplotypeScore=1.9323;MQ=60.0;MQ0=0;MQRankSum=-0.991;QD=9.15;ReadPosRankSum=-0.907;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:29,19:48:99:469,0,946
17    77073776    rs62063818    A    T    979.06    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.012;DB;DP=88;Dels=0.0;FS=2.935;HRun=0;HaplotypeScore=2.4104;MQ=59.74;MQ0=0;MQRankSum=-0.523;QD=11.13;ReadPosRankSum=0.218;SNPEFF_AMINO_ACID_CHANGE=P82;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77073745_77073946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:50,38:88:99:1009,0,1446
17    77073941    rs56353542    T    C    134.71    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.599;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=7.48;ReadPosRankSum=-0.222;SNPEFF_AMINO_ACID_CHANGE=D137;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77073745_77073946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:10,8:18:99:165,0,364
17    77076302    rs62063824    G    A    266.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=27;Dels=0.0;FS=1.757;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=9.85;ReadPosRankSum=0.437;SNPEFF_AMINO_ACID_CHANGE=T193;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77076289_77076446;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:18,9:27:99:296,0,499
17    77076663    rs118088738    C    T    42.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=8.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:2,3:5:67.59:72,0,68
17    77076669    rs117781867    C    T    31.39    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.28;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:2,3:5:61.38:61,0,66
17    77076856    rs58975852    G    T    95.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.922;QD=11.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:4,4:8:99:125,0,138
17    77076960    rs2889533    A    G    234.74    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=32;Dels=0.0;FS=3.902;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.713;QD=7.34;ReadPosRankSum=0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:23,9:32:99:265,0,745
17    77076962    rs2889532    A    G    198.68    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=35;Dels=0.0;FS=6.447;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.456;QD=5.68;ReadPosRankSum=0.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:25,10:35:99:229,0,820
17    77078109    rs1317421    A    G    539.76    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=44;Dels=0.0;FS=1.279;HRun=3;HaplotypeScore=0.7887;MQ=58.51;MQ0=0;MQRankSum=0.524;QD=12.27;ReadPosRankSum=0.475;SNPEFF_AMINO_ACID_CHANGE=R334;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77077980_77078145;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:24,20:44:99:570,0,697
17    77081150    rs4789982    C    T    37.11    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536406    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:67,0,33
17    77081222    rs4789984    C    T    286.43    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=22.03;ReadPosRankSum=-1.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536406    GT:AD:DP:GQ:PL    0/1:4,9:13:99:316,0,105
17    77082174    rs117014247    C    T    344.26    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.846;DB;DP=41;Dels=0.0;FS=12.958;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.735;QD=8.4;ReadPosRankSum=0.441;SNPEFF_AMINO_ACID_CHANGE=R659C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77082015_77082778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545583    GT:AD:DP:GQ:PL    0/1:25,16:41:99:374,0,742
17    77083180    rs57241083    C    G    188.19    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=13;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.135;QD=14.48;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:5,8:13:99:218,0,151
17    77087005    rs112100897    C    CA    257.88    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.281;DB;DP=13;FS=5.756;HRun=0;HaplotypeScore=34.4169;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=19.84;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENGASE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311595    GT:AD:DP:GQ:PL    0/1:6,7:13:99:297,0,210
17    77093734    rs59021665    A    G    189.17    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=3.4531;MQ=56.35;MQ0=0;MQRankSum=0.555;QD=14.55;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338834    GT:AD:DP:GQ:PL    0/1:6,7:13:99:219,0,169
17    77093768    rs58352742    T    C    245.13    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.811;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.181;QD=13.62;ReadPosRankSum=-0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338834    GT:AD:DP:GQ:PL    0/1:7,11:18:99:275,0,234
17    77097649    rs11651975    G    A    140.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.68;ReadPosRankSum=1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338834    GT:AD:DP:GQ:PL    0/1:6,6:12:99:170,0,169
17    77097811    rs2612798    G    C    44.91    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.727;QD=8.98;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338834    GT:AD:DP:GQ:PL    0/1:1,4:5:14.66:75,0,15
17    77099116    rs7208334    C    G    162.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFOX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338834    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
17    77704912    rs8074547    T    C    215.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.111;DB;DP=20;Dels=0.0;FS=1.952;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=10.76;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=L4P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77704882_77705154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328313    GT:AD:DP:GQ:PL    0/1:10,10:20:99:245,0,217
17    77705045    rs8074728    T    C    319.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.134;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.36;MQ0=0;MQRankSum=0.305;QD=12.78;ReadPosRankSum=0.86;SNPEFF_AMINO_ACID_CHANGE=D48;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77704882_77705154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328313    GT:AD:DP:GQ:PL    0/1:10,15:25:99:350,0,340
17    77707120    rs3923265    A    G    116.79    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=10.62;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328313    GT:AD:DP:GQ:PL    0/1:6,5:11:99:147,0,217
17    77708793    rs72855484    G    C    227.59    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.736;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.501;QD=10.84;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328313    GT:AD:DP:GQ:PL    0/1:12,9:21:99:258,0,414
17    77709339    rs11657217    C    G    299.72    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.955;DB;DP=34;Dels=0.0;FS=8.94;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.234;QD=8.82;ReadPosRankSum=-0.198;SNPEFF_AMINO_ACID_CHANGE=A299;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77708842_77709468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENPP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328313    GT:AD:DP:GQ:PL    0/1:22,12:34:99:330,0,665
17    77752147    rs56050112    T    C    82.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=10.27;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269399    GT:AD:DP:GQ:PL    0/1:3,5:8:63.16:112,0,63
17    77753191    rs35124694    C    T    54.54    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=58.01;MQ0=1;MQRankSum=-0.623;QD=3.41;ReadPosRankSum=0.623;SNPEFF_AMINO_ACID_CHANGE=I49;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77753161_77753226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269399    GT:AD:DP:GQ:PL    0/1:13,3:16:84.54:85,0,341
17    77753245    rs3833851    C    CTG    397.98    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.031;DB;DP=18;FS=2.077;HRun=0;HaplotypeScore=59.697;IndelType=I;MQ=57.48;MQ0=1;MQRankSum=0.337;QD=20.95;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269399    GT:AD:DP:GQ:PL    0/1:8,11:18:99:437,0,294
17    77768654    rs4889891    C    A    206.92    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.766;DB;DP=19;Dels=0.0;FS=6.419;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=10.89;ReadPosRankSum=0.124;SNPEFF_AMINO_ACID_CHANGE=G317V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77765931_77769357;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269385    GT:AD:DP:GQ:PL    0/1:11,8:19:99:237,0,360
17    77769837    rs11651828    T    C    2306.72    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.116;DB;DP=151;Dels=0.0;FS=1.341;HRun=0;HaplotypeScore=0.8321;MQ=59.69;MQ0=0;MQRankSum=-1.242;QD=15.28;ReadPosRankSum=0.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269385    GT:AD:DP:GQ:PL    0/1:72,79:151:99:2337,0,2193
17    77770173    rs34363282    G    GGT    437.72    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.137;DB;DP=52;FS=8.113;HRun=0;HaplotypeScore=158.3309;IndelType=I;MQ=58.46;MQ0=1;MQRankSum=-0.438;QD=8.26;ReadPosRankSum=0.276;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269385    GT:AD:DP:GQ:PL    0/1:41,10:52:99:477,0,787
17    77808570    .    A    G    116.29    HaplotypeScoreFilter13;QDFilter2    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.871;DP=95;Dels=0.0;FS=47.794;HRun=5;HaplotypeScore=13.7303;MQ=51.06;MQ0=0;MQRankSum=-1.603;QD=1.22;ReadPosRankSum=0.809;SNPEFF_AMINO_ACID_CHANGE=S291P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77806955_77809194;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269397    GT:AD:DP:GQ:PL    0/1:49,46:95:99:146,0,1126
17    77923014    rs11651991    T    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310924    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    77924776    rs1285293    C    T    90.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310924    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
17    77926293    rs1696772    T    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310924    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    77926297    rs875731    T    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310924    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    77926491    rs4889804    G    A    267.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.659;DB;DP=21;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.76;QD=12.73;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=D302;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77926456_77926617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310924    GT:AD:DP:GQ:PL    0/1:9,12:21:99:297,0,311
17    77984141    rs35922784    C    T    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.86;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=G199;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_77983959_77984556;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310924    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,106
17    78010548    rs3752041    C    A    36.57    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.731;QD=6.1;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269318    GT:AD:DP:GQ:PL    0/1:1,5:6:18.64:67,0,19
17    78013724    rs2289527    G    C    1522.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.19;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=V69;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78013611_78014069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269318    GT:AD:DP:GQ:PL    1/1:0,47:49:99:1556,126,0
17    78021037    rs7207441    A    G    96.81    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=13;Dels=0.0;FS=3.041;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.694;QD=7.45;ReadPosRankSum=-1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269318    GT:AD:DP:GQ:PL    0/1:9,4:13:99:127,0,317
17    78021214    rs7212525    T    C    48.90    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=4.07;ReadPosRankSum=-1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269318    GT:AD:DP:GQ:PL    0/1:7,5:12:78.89:79,0,255
17    78022245    rs2289529    G    A    351.47    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.681;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=2.058;QD=11.72;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269318    GT:AD:DP:GQ:PL    0/1:16,14:30:99:381,0,469
17    78023614    rs7219552    G    A    149.38    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.6;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269318    GT:AD:DP:GQ:PL    0/1:4,5:9:99:179,0,113
17    78055186    .    A    ATAAAT    309.42    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=69.7423;IndelType=I;MQ=56.66;MQ0=0;QD=51.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:0,1:6:18.06:351,18,0
17    78055758    rs35578653    T    G    159.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.25;SNPEFF_AMINO_ACID_CHANGE=A630;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78055675_78055857;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:0,12:12:15.04:192,15,0
17    78061270    rs11150838    G    C    130.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:164,15,0
17    78061317    rs11150839    A    C    258.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:291,24,0
17    78061353    rs11150840    G    A    332.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:365,30,0
17    78061979    rs12942049    A    C    392.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.579;QD=23.11;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:1,15:17:0.90:422,1,0
17    78063307    rs149729871    TTCTC    T    170.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=40.5353;IndelType=D;MQ=57.52;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:212,12,0
17    78063957    rs7210658    A    G    168.18    SnpCluster    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.594;DB;DP=32;Dels=0.0;FS=1.537;HRun=2;HaplotypeScore=1.399;MQ=57.8;MQ0=0;MQRankSum=-0.902;QD=5.26;ReadPosRankSum=-0.33;SNPEFF_AMINO_ACID_CHANGE=Q951R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78063938_78064198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    0/1:21,11:32:99:198,0,580
17    78063964    rs7210664    A    G    145.82    SnpCluster    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.333;DB;DP=27;Dels=0.0;FS=4.409;HRun=0;HaplotypeScore=0.6651;MQ=58.27;MQ0=0;MQRankSum=-0.393;QD=5.4;ReadPosRankSum=-0.151;SNPEFF_AMINO_ACID_CHANGE=A953;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78063938_78064198;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    0/1:18,9:27:99:176,0,476
17    78063966    rs7210665    A    G    151.33    SnpCluster    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.809;DB;DP=27;Dels=0.0;FS=4.468;HRun=0;HaplotypeScore=0.6651;MQ=58.27;MQ0=0;MQRankSum=0.694;QD=5.6;ReadPosRankSum=0.116;SNPEFF_AMINO_ACID_CHANGE=H954R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78063938_78064198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    0/1:19,8:27:99:181,0,514
17    78064015    rs4889953    G    C    322.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.98;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=K970N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78063938_78064198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:356,27,0
17    78064064    rs7207166    G    A    199.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.63;MQ0=0;QD=28.5;SNPEFF_AMINO_ACID_CHANGE=G987R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78063938_78064198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374877    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:232,18,0
17    78071052    rs12952612    T    C    1844.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7845;MQ=59.65;MQ0=0;QD=34.15;SNPEFF_AMINO_ACID_CHANGE=D1010;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78071044_78071202;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397545    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1877,144,0
17    78073562    rs2304854    A    G    540.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.59;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=15.46;ReadPosRankSum=-1.145;SNPEFF_AMINO_ACID_CHANGE=P1139;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78073326_78074412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397545    GT:AD:DP:GQ:PL    0/1:15,20:35:99:571,0,459
17    78078709    rs1800300    T    C    313.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_AMINO_ACID_CHANGE=C108;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78078354_78078931;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:346,27,0
17    78079305    rs8065426    C    G    37.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397545    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
17    78079481    rs8069491    C    G    658.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.06;MQ0=0;QD=32.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:692,54,0
17    78079509    rs12452721    T    G    661.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=27.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,24:24:54.17:694,54,0
17    78079544    rs3816256    C    G    1249.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,42:42:93.29:1282,93,0
17    78079597    rs1042393    A    G    972.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_AMINO_ACID_CHANGE=H199R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78079548_78079693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,29:29:78.22:1006,78,0
17    78079643    rs1800301    C    T    207.74    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.386;QD=14.84;ReadPosRankSum=-1.365;SNPEFF_AMINO_ACID_CHANGE=S214;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78079548_78079693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    0/1:6,8:14:99:238,0,172
17    78079669    rs1042395    G    A    656.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=R223H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78079548_78079693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,19:19:57.12:690,57,0
17    78079837    rs2304847    A    G    73.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
17    78081140    rs11150844    T    C    159.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
17    78081515    rs142626724    G    A    108.53    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.887;DB;DP=28;Dels=0.0;FS=3.799;HRun=0;HaplotypeScore=0.8941;MQ=50.44;MQ0=0;MQRankSum=1.079;QD=3.88;ReadPosRankSum=-1.462;SNPEFF_AMINO_ACID_CHANGE=A284;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78081356_78081521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    0/1:18,10:28:99:139,0,567
17    78081526    rs3071247    A    AGCAGCGG    2552.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=209.2586;IndelType=I;MQ=46.36;MQ0=0;QD=88.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:9,16:29:84.28:2594,84,0
17    78081551    rs2304845    T    C    320.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.33;MQ0=0;QD=16.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,20:20:33.07:354,33,0
17    78081707    rs2252455    G    A    194.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:227,18,0
17    78081982    rs2241888    G    A    736.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:770,57,0
17    78082005    rs2241887    C    T    891.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,28:28:66.22:925,66,0
17    78082504    rs1800304    G    A    437.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=Q401;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78082496_78082627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:470,36,0
17    78083565    rs2278620    G    A    33.83    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.572;QD=4.23;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    0/1:6,2:8:63.82:64,0,124
17    78083726    rs2278619    A    G    873.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,32:32:75.19:907,75,0
17    78084418    rs12944802    G    A    148.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=29.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:181,15,0
17    78084507    rs2304844    G    C    890.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.2;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:923,69,0
17    78084688    rs2304843    C    A    1120.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:1,32:33:90.28:1154,90,0
17    78084769    rs1042396    G    A    324.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.053;DB;DP=30;Dels=0.0;FS=1.585;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.826;QD=10.81;ReadPosRankSum=0.614;SNPEFF_AMINO_ACID_CHANGE=R527;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78084740_78084824;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    0/1:18,12:30:99:354,0,550
17    78085597    rs12951255    A    G    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
17    78086043    rs2304838    C    T    267.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:301,24,0
17    78086846    rs2304836    A    G    35.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
17    78087109    rs1800310    A    G    37.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.33;ReadPosRankSum=1.537;SNPEFF_AMINO_ACID_CHANGE=T711;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78087017_78087165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    0/1:3,3:6:66.17:68,0,66
17    78090928    rs2304832    G    A    605.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:638,51,0
17    78091201    rs2304830    A    T    387.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:421,30,0
17    78091405    rs1126690    G    A    1620.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=V780I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78091399_78091548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1653,126,0
17    78092063    rs1042397    G    A    1167.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=G851;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78091992_78092156;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,35:35:90.30:1200,90,0
17    78092844    rs9890469    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302262    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    78111178    rs61751628    G    C    694.68    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=58.93;MQ0=0;MQRankSum=-0.141;QD=7.98;ReadPosRankSum=-0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    0/1:56,31:87:99:725,0,1700
17    78111449    rs2289535    A    C    124.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=8.86;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    0/1:7,7:14:99:154,0,246
17    78111877    rs2361710    T    C    1012.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=31.64;ReadPosRankSum=-0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    1/1:1,31:32:39.50:1046,39,0
17    78113832    rs2241886    G    A    959.44    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=2.099;DB;DP=68;Dels=0.0;FS=3.501;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.783;QD=14.11;ReadPosRankSum=-1.046;SNPEFF_AMINO_ACID_CHANGE=V160;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78113807_78113939;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    0/1:31,37:68:99:989,0,885
17    78114895    rs72850889    T    A    138.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:171,15,0
17    78114991    rs8082247    T    C    485.32    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=3.313;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.198;QD=22.06;ReadPosRankSum=-1.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    0/1:7,15:22:99:515,0,203
17    78114996    rs12949569    C    T    190.74    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.126;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.41;QD=9.08;ReadPosRankSum=1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    0/1:14,7:21:99:221,0,528
17    78115484    rs935117    A    C    130.55    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=11.87;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    0/1:6,5:11:99:161,0,218
17    78117841    rs66887082    G    A    186.70    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=1.215;QD=12.45;ReadPosRankSum=-1.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269349    GT:AD:DP:GQ:PL    0/1:8,7:15:99:217,0,276
17    78162170    rs28674001    G    A    383.12    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=3.087;DB;DP=29;Dels=0.0;FS=1.856;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.116;QD=13.21;ReadPosRankSum=2.623;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309710    GT:AD:DP:GQ:PL    0/1:17,12:29:99:413,0,411
17    78166385    rs11658460    C    T    464.62    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.977;DB;DP=42;Dels=0.0;FS=3.582;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.416;QD=11.06;ReadPosRankSum=0.754;SNPEFF_AMINO_ACID_CHANGE=D204;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78166302_78166418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309710    GT:AD:DP:GQ:PL    0/1:25,17:42:99:495,0,674
17    78171944    rs2066964    G    C    1848.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=30.81;SNPEFF_AMINO_ACID_CHANGE=R310S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78171898_78171961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309710    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1881,141,0
17    78175483    rs2304856    T    C    654.08    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.907;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=0.857;QD=15.95;ReadPosRankSum=-1.522;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309710    GT:AD:DP:GQ:PL    0/1:19,22:41:99:684,0,440
17    78175807    rs34188525    TC    T    249.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=12;FS=2.817;HRun=4;HaplotypeScore=39.8196;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.294;QD=20.75;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309710    GT:AD:DP:GQ:PL    0/1:3,9:12:90.01:288,0,90
17    78175854    rs3813063    C    A    163.40    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=16;Dels=0.0;FS=2.246;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-2.117;QD=10.21;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309710    GT:AD:DP:GQ:PL    0/1:9,7:16:99:193,0,319
17    78176233    rs8069255    T    A    230.48    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=19;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.286;QD=12.13;ReadPosRankSum=-1.266;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309710    GT:AD:DP:GQ:PL    0/1:10,9:19:99:260,0,302
17    78178170    rs4889996    A    G    141.39    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=10.1;ReadPosRankSum=-1.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392434    GT:AD:DP:GQ:PL    0/1:8,6:14:99:171,0,283
17    78178189    rs4889997    G    A    49.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=5.5;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392434    GT:AD:DP:GQ:PL    0/1:6,3:9:79.46:79,0,220
17    78178830    rs11653893    A    G    44.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=7.41;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392434    GT:AD:DP:GQ:PL    0/1:2,4:6:60.88:74,0,61
17    78178893    rs11652075    C    T    153.07    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=21.87;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=R820W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78178834_78179004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344227    GT:AD:DP:GQ:PL    0/1:2,5:7:61.34:183,0,61
17    78180587    rs4889837    A    G    385.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392434    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:418,33,0
17    78180618    rs4889998    A    C    641.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.385;QD=35.62;ReadPosRankSum=0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392434    GT:AD:DP:GQ:PL    1/1:1,17:18:26.51:674,27,0
17    78181117    rs7221289    G    A    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392434    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
17    78187734    rs117217614    C    T    62.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CARD14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344227    GT:AD:DP:GQ:PL    0/1:1,3:4:22.32:93,0,22
17    78188963    rs4889839    G    A    255.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326317    GT:AD:DP:GQ:PL    1/1:0,12:12:21.07:289,21,0
17    78189009    rs4889840    C    T    88.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326317    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
17    78210944    rs8070283    G    A    325.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=27.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:358,27,0
17    78215844    rs11657813    T    C    97.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:130,12,0
17    78219065    rs7406843    C    A    867.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:901,69,0
17    78219100    rs7406844    C    T    454.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,16:16:39.10:487,39,0
17    78221850    rs12941437    A    G    105.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:138,12,0
17    78222280    rs7209848    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    78222803    rs9904365    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
17    78223103    rs8064518    C    A    273.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:306,24,0
17    78223238    rs6565661    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC26A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    78269255    rs67996567    GA    G    298.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=28.9489;IndelType=D;MQ=62.13;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319921    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:340,27,0
17    78292779    rs74790219    A    G    109.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.813;QD=9.15;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319921    GT:AD:DP:GQ:PL    0/1:6,6:12:99:140,0,173
17    78292877    rs55767628    G    C    717.30    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=48;Dels=0.0;FS=6.492;HRun=0;HaplotypeScore=1.8773;MQ=59.52;MQ0=0;MQRankSum=0.578;QD=14.94;ReadPosRankSum=1.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319921    GT:AD:DP:GQ:PL    0/1:23,25:48:99:747,0,792
17    78292945    rs6565666    G    A    2056.58    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=6.351;DB;DP=152;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4532;MQ=59.54;MQ0=0;MQRankSum=-0.742;QD=13.53;ReadPosRankSum=-1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319921    GT:AD:DP:GQ:PL    0/1:78,73:152:99:2087,0,2106
17    78319136    rs9674961    G    A    2787.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=S2334N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78318478_78322086;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000508628    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2821,208,0
17    78319380    rs4890012    G    C    1596.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.93;SNPEFF_AMINO_ACID_CHANGE=P2415;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78318478_78322086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000508628    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1630,132,0
17    78323311    rs56127781    C    T    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
17    78323445    rs35993981    T    A    1002.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,28:28:78.23:1036,78,0
17    78323757    rs7223115    T    C    650.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,25:25:60.13:684,60,0
17    78324048    rs9944443    T    A    607.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:641,48,0
17    78324259    rs12051723    G    T    686.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:719,54,0
17    78327358    rs7216493    G    A    758.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_AMINO_ACID_CHANGE=E1563;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78327312_78327466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:791,60,0
17    78332396    rs9915562    A    G    111.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
17    78333840    rs8067292    T    C    329.89    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=26;Dels=0.0;FS=3.674;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.392;QD=12.69;ReadPosRankSum=-0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:12,14:26:99:360,0,393
17    78341809    .    C    T    1644.29    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=3.796;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3639;MQ=59.62;MQ0=0;MQRankSum=-1.236;QD=15.09;ReadPosRankSum=1.337;SNPEFF_AMINO_ACID_CHANGE=P2080;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78341761_78341943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:50,59:109:99:1674,0,1428
17    78346870    rs62077764    C    A    227.26    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=0.177;QD=14.2;ReadPosRankSum=-1.827;SNPEFF_AMINO_ACID_CHANGE=L2356I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78346775_78346965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:6,10:16:99:257,0,170
17    78348494    rs6565681    A    G    174.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
17    78351506    rs62077765    A    G    883.41    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=54;Dels=0.0;FS=2.742;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.404;QD=16.36;ReadPosRankSum=-0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:25,28:54:99:913,0,785
17    78354661    rs4889848    C    T    4524.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.25;MQ0=0;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=H2630;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78354631_78354787;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,132:132:99:4524,343,0
17    78355176    rs7224239    A    G    206.49    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=1.271;QD=18.77;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:2,8:11:48.14:236,0,48
17    78355494    rs61745599    C    G    160.44    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=9.44;ReadPosRankSum=-1.256;SNPEFF_AMINO_ACID_CHANGE=L2722V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78355347_78355527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:11,6:17:99:190,0,320
17    78359309    rs62077768    C    T    184.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=15.37;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,172
17    78362269    rs6565682    G    A    369.98    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.262;DB;DP=19;Dels=0.0;FS=4.102;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.454;QD=19.47;ReadPosRankSum=-0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:8,11:19:99:400,0,227
17    78362300    rs6565683    A    T    1139.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.23;MQ0=0;QD=37.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    1/1:0,30:30:87.26:1173,87,0
17    78362651    rs7223701    T    G    95.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.55;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,224
17    78363054    rs8072774    G    A    762    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.022;DB;DP=52;Dels=0.0;FS=2.413;HRun=0;HaplotypeScore=1.6281;MQ=59.11;MQ0=0;MQRankSum=-1.447;QD=14.65;ReadPosRankSum=2.143;SNPEFF_AMINO_ACID_CHANGE=V3101I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78362973_78363167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:27,25:52:99:792,0,764
17    78364054    rs112581808    T    C    879.07    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.229;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8137;MQ=59.23;MQ0=0;MQRankSum=-0.985;QD=14.65;ReadPosRankSum=-0.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF213;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336301    GT:AD:DP:GQ:PL    0/1:27,33:60:99:909,0,871
17    78389068    .    C    T    65.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DP=12;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.034;QD=5.49;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ENDOV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323854    GT:AD:DP:GQ:PL    0/1:8,4:12:95.87:96,0,201
17    78396091    rs9907097    C    G    176.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=18;Dels=0.0;FS=2.003;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=9.83;ReadPosRankSum=-0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ENDOV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520910    GT:AD:DP:GQ:PL    0/1:8,10:18:99:207,0,234
17    78410050    rs7207961    A    G    345.77    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.262;DB;DP=28;Dels=0.0;FS=4.228;HRun=0;HaplotypeScore=1.8857;MQ=48.92;MQ0=1;MQRankSum=-2.651;QD=12.35;ReadPosRankSum=0.612;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ENDOV;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517795    GT:AD:DP:GQ:PL    0/1:8,20:28:99:376,0,212
17    78444658    rs12943620    T    G    871.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.8;MQ0=0;QD=27.24;SNPEFF_AMINO_ACID_CHANGE=G180;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78444327_78444834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535681    GT:AD:DP:GQ:PL    1/1:0,32:32:72.20:905,72,0
17    78444948    rs11869626    A    C    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306773    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
17    78445702    rs1131609    A    G    657.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_AMINO_ACID_CHANGE=L303;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78445532_78445711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306773    GT:AD:DP:GQ:PL    1/1:0,21:21:54.15:690,54,0
17    78446857    rs11657587    C    T    198.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306773    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
17    78446932    rs11657630    C    A    736.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306773    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:770,57,0
17    78519519    rs61750765    T    C    845.23    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.596;DB;DP=57;Dels=0.0;FS=3.955;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.154;QD=14.83;ReadPosRankSum=-0.331;SNPEFF_AMINO_ACID_CHANGE=F30;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78518625_78519591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:24,33:57:99:875,0,787
17    78599655    rs901065    G    T    525.97    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.149;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3001;MQ=58.81;MQ0=0;MQRankSum=0.716;QD=13.49;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:19,20:39:99:556,0,630
17    78617439    rs6565469    T    C    245.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,9:9:24.03:278,24,0
17    78681520    rs9900445    A    G    202.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:236,21,0
17    78681590    rs2306690    A    G    567.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,18:18:45.15:601,45,0
17    78765080    rs17848624    A    C    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,69
17    78765219    rs4969429    A    G    315.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.554;DB;DP=40;Dels=0.0;FS=10.265;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.123;QD=7.88;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:25,15:40:99:345,0,842
17    78797066    rs2019040    T    A    547.64    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.259;DB;DP=39;Dels=0.0;FS=4.31;HRun=0;HaplotypeScore=1.9243;MQ=59.41;MQ0=0;MQRankSum=1.35;QD=14.04;ReadPosRankSum=-1.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:17,21:39:99:578,0,547
17    78829484    rs9895380    T    G    168.10    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.656;QD=12.93;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:7,6:13:99:198,0,248
17    78854056    rs6420478    A    G    83.23    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.246;QD=7.57;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:7,4:11:99:113,0,255
17    78865491    rs2289763    C    G    1618.39    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.694;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7675;MQ=59.33;MQ0=0;MQRankSum=-0.633;QD=12.35;ReadPosRankSum=-0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:73,58:131:99:1648,0,2183
17    78865546    rs2289764    T    C    3818.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_AMINO_ACID_CHANGE=L512;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78865520_78865637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544334    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3819,310,0
17    78865630    rs2289765    A    G    770.87    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.251;DB;DP=79;Dels=0.0;FS=0.922;HRun=0;HaplotypeScore=2.9214;MQ=59.71;MQ0=0;MQRankSum=-0.6;QD=9.76;ReadPosRankSum=0.321;SNPEFF_AMINO_ACID_CHANGE=A540;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78865520_78865637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544334    GT:AD:DP:GQ:PL    0/1:50,29:79:99:801,0,1524
17    78865824    rs2289766    A    G    38.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.65;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:3,2:5:68.24:68,0,105
17    78866410    rs8069822    A    G    183.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:216,18,0
17    78867377    rs2333984    A    G    116.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:149,12,0
17    78867733    rs3751943    A    G    995.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.26;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.84;MQ0=0;MQRankSum=1.473;QD=24.28;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:1,40:41:78.22:1029,78,0
17    78867822    rs17848656    C    T    359.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:393,30,0
17    78867906    rs55880615    G    A    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    78882329    rs2063791    G    A    74.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.87;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:2,3:5:57.21:104,0,57
17    78882806    rs1468029    G    A    599.89    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.505;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.834;QD=14.28;ReadPosRankSum=-0.455;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:23,19:42:99:630,0,752
17    78882825    rs6420479    A    G    395.32    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.095;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=12.35;ReadPosRankSum=-0.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:18,14:32:99:425,0,624
17    78882840    rs1468030    A    G    213.18    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.337;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.534;QD=9.69;ReadPosRankSum=-0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:13,9:22:99:243,0,467
17    78896488    rs2271602    C    T    77.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=15.5;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:2,3:5:61.39:107,0,61
17    78897561    rs6565491    C    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
17    78897587    rs6565492    A    G    79.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
17    78914245    rs17848659    G    T    32.29    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.61;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:5,2:7:62.28:62,0,147
17    78919285    rs8077224    A    G    34.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.05;MQ0=0;MQRankSum=-1.537;QD=5.79;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:3,3:6:64.76:65,0,98
17    78919349    rs8080910    A    G    47.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.25;MQ0=0;MQRankSum=-1.537;QD=7.89;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:3,3:6:77.31:77,0,103
17    78919387    rs17848707    G    A    132.96    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=14.77;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:4,5:9:99:163,0,113
17    78919558    rs1567962    C    T    759.92    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.995;DB;DP=49;Dels=0.0;FS=8.114;HRun=0;HaplotypeScore=0.9916;MQ=57.24;MQ0=0;MQRankSum=1.652;QD=15.51;ReadPosRankSum=-0.373;SNPEFF_AMINO_ACID_CHANGE=A1039;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_78919467_78919581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:23,26:49:99:790,0,631
17    78923178    rs3751940    C    T    727.18    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.841;QD=12.33;ReadPosRankSum=0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:35,24:59:99:757,0,1209
17    78938011    rs3751937    C    A    87.53    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.84;MQ0=0;MQRankSum=-0.537;QD=4.38;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:13,7:20:99:118,0,302
17    78938134    rs55677452    C    T    361.78    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.139;DB;DP=33;Dels=0.0;FS=3.155;HRun=0;HaplotypeScore=4.5429;MQ=58.15;MQ0=0;MQRankSum=-0.417;QD=10.96;ReadPosRankSum=-1.052;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:15,18:33:99:392,0,381
17    78938204    rs3751936    G    C    279.13    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.755;QD=14.69;ReadPosRankSum=-1.266;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306801    GT:AD:DP:GQ:PL    0/1:9,10:19:99:309,0,265
17    78969386    rs4969333    G    C    522.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:555,42,0
17    78969590    rs66738175    T    C    668.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    1/1:0,25:25:60.16:701,60,0
17    78970779    rs12951796    G    C    1052.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    1/1:0,35:36:84.26:1085,84,0
17    78970909    rs4969334    A    G    493.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:527,42,0
17    78971148    rs112187540    GC    G    82.56    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=93.2907;IndelType=D;MQ=50.9;MQ0=0;MQRankSum=-1.307;QD=6.35;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    0/1:7,6:13:99:122,0,116
17    78971176    rs9989475    A    G    66.52    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=0.937;QD=9.5;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    0/1:4,3:7:60.62:97,0,61
17    78971182    rs9989472    C    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=8.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    1/1:0,6:6:6.02:80,6,0
17    78972326    rs10871491    A    G    663.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.05;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:696,51,0
17    78972421    rs11653865    A    G    41.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
17    78972864    rs11870458    T    C    857.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.387;DB;DP=30;Dels=0.0;FS=3.655;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.592;QD=28.6;ReadPosRankSum=1.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325167    GT:AD:DP:GQ:PL    1/1:2,27:30:30.46:891,30,0
17    79009061    rs8068528    C    T    30.18    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=3.02;ReadPosRankSum=1.271;SNPEFF_AMINO_ACID_CHANGE=L3;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79008947_79009108;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    0/1:8,2:10:60.17:60,0,195
17    79009153    rs8073224    T    C    135.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:168,15,0
17    79031825    rs9898347    G    A    76.51    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.02;MQ0=0;MQRankSum=-0.742;QD=10.93;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    0/1:1,6:7:29.72:106,0,30
17    79060180    rs7210438    C    T    885.75    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.665;DB;DP=98;Dels=0.0;FS=4.811;HRun=0;HaplotypeScore=2.713;MQ=55.41;MQ0=0;MQRankSum=0.127;QD=9.04;ReadPosRankSum=0.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    0/1:61,37:98:99:916,0,1561
17    79077957    rs34057293    T    C    287.82    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=58.55;MQ0=0;MQRankSum=-0.271;QD=17.99;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    0/1:6,10:16:99:318,0,154
17    79077980    rs57792378    A    C    226.75    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.27;QD=14.17;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    0/1:7,9:16:99:257,0,223
17    79082245    rs138099755    G    A    595.99    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=2.634;DB;DP=37;Dels=0.0;FS=3.235;HRun=0;HaplotypeScore=1.8628;MQ=60.0;MQ0=0;MQRankSum=0.789;QD=16.11;ReadPosRankSum=0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    0/1:13,24:37:99:626,0,273
17    79084465    rs4072589    G    A    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.82;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    0/1:2,2:4:53.81:69,0,54
17    79084574    rs56084168    C    T    201.41    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.811;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.2;QD=13.43;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321280    GT:AD:DP:GQ:PL    0/1:7,8:15:99:231,0,205
17    79089590    rs4969391    A    G    304.90    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7273;MQ=59.6;MQ0=0;MQRankSum=0.463;QD=5.35;ReadPosRankSum=1.092;SNPEFF_AMINO_ACID_CHANGE=Q441R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79089570_79089778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392411    GT:AD:DP:GQ:PL    0/1:41,16:57:99:335,0,1140
17    79095144    rs8073904    G    A    301.95    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=0.815;DB;DP=19;Dels=0.0;FS=2.003;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.181;QD=15.89;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=A828;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79095048_79096226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374792    GT:AD:DP:GQ:PL    0/1:7,12:19:99:332,0,206
17    79095629    rs7503604    C    A    67.67    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=11;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.15;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=G667C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79095048_79096226;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374792    GT:AD:DP:GQ:PL    0/1:8,3:11:97.66:98,0,228
17    79098926    rs12950045    G    A    77.52    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.5;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326724    GT:AD:DP:GQ:PL    0/1:1,4:5:27.97:108,0,28
17    79098951    rs9902107    C    T    35.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.88;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326724    GT:AD:DP:GQ:PL    0/1:4,2:6:65.29:65,0,111
17    79105850    rs4969253    T    C    74.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326724    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
17    79106280    rs4075839    G    A    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326724    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
17    79108081    rs112566905    A    G    92.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=11.56;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326724    GT:AD:DP:GQ:PL    0/1:3,5:8:99:122,0,105
17    79108141    rs4969397    A    G    698.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326724    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:732,54,0
17    79163649    rs2292182    G    A    624.51    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.733;DB;DP=50;Dels=0.0;FS=2.988;HRun=1;HaplotypeScore=1.9367;MQ=60.0;MQ0=0;MQRankSum=0.186;QD=12.49;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    0/1:28,22:50:99:655,0,905
17    79165171    rs869370    G    A    779.09    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.323;DB;DP=44;Dels=0.0;FS=1.646;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=17.71;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    0/1:17,27:44:99:809,0,533
17    79171967    rs2659016    A    G    139.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.29;SNPEFF_AMINO_ACID_CHANGE=V473A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79171906_79172097;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:173,15,0
17    79172119    rs112770207    G    C    72.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=9.02;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    0/1:4,4:8:99:102,0,137
17    79173184    rs2659015    T    C    276.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_AMINO_ACID_CHANGE=T397A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79173181_79173349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:309,24,0
17    79173224    rs2725419    T    C    240.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.72;SNPEFF_AMINO_ACID_CHANGE=T383;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79173181_79173349;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:273,21,0
17    79173398    rs906176    A    G    82.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=8.25;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    0/1:6,4:10:99:112,0,176
17    79173462    rs906175    C    T    226.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.965;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=16.2;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    0/1:6,8:14:99:257,0,201
17    79174221    rs2466773    T    C    43.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.38;SNPEFF_AMINO_ACID_CHANGE=T272A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79174129_79174246;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
17    79175895    rs11150776    T    C    117.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=47.12;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
17    79180369    rs55844247    C    G    132.61    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.25;MQ0=0;MQRankSum=1.357;QD=7.8;ReadPosRankSum=-1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    0/1:11,6:17:99:163,0,360
17    79180775    rs2256881    A    G    761.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:794,60,0
17    79181202    rs2456582    G    A    38.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269392    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
17    79202956    rs2048057    T    C    612.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=2.0234;MQ=58.99;MQ0=0;QD=26.62;SNPEFF_AMINO_ACID_CHANGE=P366;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79202079_79203276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374769    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:645,54,0
17    79219500    rs10569617    AATG    A    1085.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=109.0039;IndelType=D;MQ=55.49;MQ0=0;QD=45.23;SNPEFF_AMINO_ACID_CHANGE=II1071I;SNPEFF_CODON_CHANGE=atcatt/att;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_17_79218800_79220473;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374759    GT:AD:DP:GQ:PL    1/1:0,24:24:69.24:1128,69,0
17    79220224    rs2725405    G    C    658.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=57.77;MQ0=0;QD=31.37;SNPEFF_AMINO_ACID_CHANGE=A217G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79219978_79220473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC38A10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540966    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:692,54,0
17    79384819    rs4969436    A    G    311.41    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.38;QD=19.46;ReadPosRankSum=0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:6,10:16:99:341,0,193
17    79385044    rs56931525    C    T    243.64    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.733;QD=24.36;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:2,8:10:48.68:274,0,49
17    79385146    rs8064391    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    79389251    rs9897258    C    T    577.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:611,48,0
17    79389486    rs11870740    G    A    316.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    1/1:0,11:11:27.07:349,27,0
17    79390298    rs79918231    T    TGCGTGTGCGCGTGTGTGTCCATGAAAATGGGTGTGTGCATGTGTATGTCCATGAGGATGGGTGTGTGC    2456.73    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.735;DB;DP=23;FS=9.054;HRun=0;HaplotypeScore=902.5943;IndelType=I;MQ=45.0;MQ0=0;MQRankSum=-2.345;QD=106.81;ReadPosRankSum=0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:8,1:23:99:2496,0,541
17    79390370    rs79132913    CGT    C    1401.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=232.281;IndelType=D;MQ=56.83;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    1/1:7,37:44:99:1444,114,0
17    79409309    rs12938890    A    G    57.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.14;SNPEFF_AMINO_ACID_CHANGE=T312A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79408857_79410590;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    1/1:0,3:3:9:89,9,0
17    79414307    rs7213444    A    G    96.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.74;ReadPosRankSum=0.729;SNPEFF_AMINO_ACID_CHANGE=T1137A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79414062_79414874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,159
17    79414914    rs10871497    A    G    136.31    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=12.39;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:6,5:11:99:166,0,161
17    79424516    rs12601317    A    G    39.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.76;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=T1647A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79424436_79424618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:2,2:4:51.45:69,0,51
17    79425609    rs11871605    C    T    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.61;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:2,3:5:62.84:108,0,63
17    79425640    rs11871611    C    T    102.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=11.38;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:4,5:9:99:132,0,107
17    79426481    rs4969273    A    G    117.37    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.887;DB;DP=16;Dels=0.0;FS=2.187;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.177;QD=7.34;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:9,7:16:99:147,0,315
17    79426708    rs1871235    C    G    293.94    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=17.29;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:7,10:17:99:324,0,189
17    79427822    rs3744148    C    T    323.70    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.409;DB;DP=32;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.734;QD=10.12;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:17,15:32:99:354,0,512
17    79429711    rs3736072    C    T    55.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.11;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:6,3:9:85:85,0,218
17    79430035    rs79478942    C    T    271.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=13.59;ReadPosRankSum=2.443;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC110285.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307745    GT:AD:DP:GQ:PL    0/1:10,10:20:99:302,0,265
17    79477898    rs147585482    GC    G    1554.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=6;HaplotypeScore=149.9574;IndelType=D;MQ=61.17;MQ0=0;QD=28.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331925    GT:AD:DP:GQ:PL    1/1:4,51:55:99:1597,150,0
17    79478019    rs1139405    G    A    2074.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=Y264;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79477953_79478134;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447294    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2107,160,0
17    79478870    rs9912403    C    A    808.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331925    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:841,63,0
17    79478871    rs9912409    C    T    786.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331925    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:819,60,0
17    79478916    rs9910792    G    T    1109.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=59.28;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331925    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1143,87,0
17    79479363    rs145211830    G    A    575.18    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8899;MQ=59.67;MQ0=0;MQRankSum=-0.431;QD=8.34;ReadPosRankSum=0.998;SNPEFF_AMINO_ACID_CHANGE=A6;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79479258_79479386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331925    GT:AD:DP:GQ:PL    0/1:47,22:69:99:605,0,1274
17    79495519    rs2075720    C    T    78.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334850    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
17    79497627    rs117857086    C    T    251.67    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=12;Dels=0.0;FS=8.195;HRun=1;HaplotypeScore=0.7887;MQ=53.95;MQ0=0;MQRankSum=1.611;QD=20.97;ReadPosRankSum=-1.396;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334850    GT:AD:DP:GQ:PL    0/1:2,10:12:45.57:282,0,46
17    79508263    rs62076028    A    G    84.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545865    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
17    79508400    rs14422    T    C    445.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_AMINO_ACID_CHANGE=T190A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79508335_79508421;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361039    GT:AD:DP:GQ:PL    1/1:0,14:15:36.12:478,36,0
17    79508484    rs58483803    G    A    290.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545865    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:323,24,0
17    79508506    rs2228698    G    T    279.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545865    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:312,24,0
17    79511135    rs8077430    A    G    778.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_AMINO_ACID_CHANGE=T147;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79511030_79511146;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361039    GT:AD:DP:GQ:PL    1/1:0,24:24:63.18:811,63,0
17    79512567    rs8074089    C    T    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=21.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541246    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
17    79514129    rs11552304    G    A    388.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=29.9;SNPEFF_AMINO_ACID_CHANGE=P309L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79513935_79515524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425898    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:422,33,0
17    79514832    rs7224579    G    A    667.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.5;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=R75C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79513935_79515524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425898    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:700,57,0
17    79516050    rs74530133    C    T    67.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=22.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C17orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536161    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
17    79580173    rs6565601    C    T    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=49.17;MQ0=0;QD=19.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331134    GT:AD:DP:GQ:PL    1/1:1,5:7:12.04:166,12,0
17    79589006    rs10871499    G    A    76.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331134    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
17    79589242    rs6565604    G    A    3152.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.81;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=T52;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79589192_79589304;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374747    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3185,235,0
17    79589359    rs6565605    C    T    2251.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331134    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2285,172,0
17    79589371    rs6565606    A    G    2001.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331134    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2034,150,0
17    79596811    rs9894429    C    T    3560.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=P11;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79596751_79596831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374747    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3561,262,0
17    79603831    rs9895741    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331134    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    79609410    rs7406219    G    T    1409.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.95;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374747    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1442,108,0
17    79609550    rs7406636    C    T    808.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374747    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:842,63,0
17    79609654    rs9912071    G    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374747    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
17    79611924    rs7406705    G    A    480.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPLOC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374747    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:514,39,0
17    79612161    rs6565616    C    T    1016.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=T60;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79612018_79612655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1050,81,0
17    79612333    rs6565617    G    A    917.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=A118T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79612018_79612655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,27:28:75.21:950,75,0
17    79612382    rs7210026    T    C    354.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_AMINO_ACID_CHANGE=V134A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79612018_79612655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:387,36,0
17    79612397    rs6420484    A    G    260.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_AMINO_ACID_CHANGE=Y139C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79612018_79612655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:293,24,0
17    79612413    rs7210043    T    C    107.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.36;SNPEFF_AMINO_ACID_CHANGE=C144;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79612018_79612655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:140,12,0
17    79614932    rs34872037    TTAAC    T    927.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=109.3021;IndelType=D;MQ=55.43;MQ0=0;QD=44.16;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_17_79614927_79614933;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:3,18:21:54.18:969,54,0
17    79615225    rs7406494    G    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_AMINO_ACID_CHANGE=R323S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79614938_79615779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
17    79615309    rs7406516    G    A    79.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_AMINO_ACID_CHANGE=K351;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79614938_79615779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
17    79615396    rs7406522    G    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE6G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331056    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
17    79618059    rs8477    C    T    725.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:759,57,0
17    79618252    rs7217415    G    A    253.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
17    79618834    rs12603868    G    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328585    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    79634774    rs61742303    A    T    955.22    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.874;DB;DP=69;Dels=0.0;FS=0.94;HRun=0;HaplotypeScore=0.734;MQ=59.46;MQ0=0;MQRankSum=2.3;QD=13.84;ReadPosRankSum=0.859;SNPEFF_AMINO_ACID_CHANGE=K50N;SNPEFF_CODON_CHANGE=aaA/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79634759_79634892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC137;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329214    GT:AD:DP:GQ:PL    0/1:33,36:69:99:985,0,1009
17    79634813    rs11546632    T    C    595.29    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=47;Dels=0.0;FS=1.28;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=12.67;ReadPosRankSum=-0.948;SNPEFF_AMINO_ACID_CHANGE=I63;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79634759_79634892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC137;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329214    GT:AD:DP:GQ:PL    0/1:25,22:47:99:625,0,847
17    79637349    rs10438817    T    C    781.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=28.96;SNPEFF_AMINO_ACID_CHANGE=S121;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79637255_79637483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC137;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329214    GT:AD:DP:GQ:PL    1/1:0,27:27:63.20:815,63,0
17    79637367    rs7226091    C    G    231.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.224;DB;DP=33;Dels=0.0;FS=1.523;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.061;QD=7.0;ReadPosRankSum=-0.183;SNPEFF_AMINO_ACID_CHANGE=H127Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79637255_79637483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC137;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329214    GT:AD:DP:GQ:PL    0/1:22,11:33:99:261,0,671
17    79637565    rs7215601    T    G    128.28    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.736;QD=21.38;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC137;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329214    GT:AD:DP:GQ:PL    0/1:1,5:6:12.55:158,0,13
17    79637637    rs7209877    G    C    50.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC137;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329214    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
17    79638805    rs11150805    C    T    691.83    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=2.716;DB;DP=42;Dels=0.0;FS=1.227;HRun=0;HaplotypeScore=0.8667;MQ=59.45;MQ0=0;MQRankSum=0.538;QD=16.47;ReadPosRankSum=-0.641;SNPEFF_AMINO_ACID_CHANGE=R177W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79638774_79638856;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC137;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329214    GT:AD:DP:GQ:PL    0/1:17,25:42:99:722,0,439
17    79639198    rs7502870    C    T    298.51    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=2.333;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=21.32;ReadPosRankSum=-1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC137;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329214    GT:AD:DP:GQ:PL    0/1:4,10:14:99:329,0,103
17    79650181    rs34815730    A    G    1547.28    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.969;DB;DP=140;Dels=0.0;FS=6.27;HRun=0;HaplotypeScore=5.0526;MQ=59.67;MQ0=0;MQRankSum=0.157;QD=11.05;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397498    GT:AD:DP:GQ:PL    0/1:83,57:140:99:1577,0,2468
17    79650675    rs8080624    C    G    127.49    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=8.5;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397498    GT:AD:DP:GQ:PL    0/1:9,5:15:99:157,0,254
17    79650828    rs8066889    T    G    494.04    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.503;DB;DP=39;Dels=0.0;FS=5.701;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.117;QD=12.67;ReadPosRankSum=1.372;SNPEFF_AMINO_ACID_CHANGE=S10R;SNPEFF_CODON_CHANGE=Agc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79650723_79650954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARL16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397498    GT:AD:DP:GQ:PL    0/1:19,20:39:99:524,0,556
17    79653311    rs72858892    T    C    217.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.818;QD=12.08;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:9,9:18:99:247,0,272
17    79657174    rs111661441    G    T    236.15    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=28;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.329;QD=8.43;ReadPosRankSum=-0.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:17,11:28:99:266,0,462
17    79658412    rs34784238    T    G    351.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DB;DP=32;Dels=0.0;FS=1.664;HRun=3;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.784;QD=10.97;ReadPosRankSum=-0.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:16,16:32:99:381,0,495
17    79661874    rs35078912    C    T    389.87    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.31;DB;DP=33;Dels=0.0;FS=3.037;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.273;QD=11.81;ReadPosRankSum=-1.111;SNPEFF_AMINO_ACID_CHANGE=I322;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79661845_79661883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:19,14:33:99:420,0,616
17    79663931    rs8070488    T    C    456.80    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=51;Dels=0.0;FS=18.401;HRun=3;HaplotypeScore=0.0;MQ=57.7;MQ0=0;MQRankSum=1.872;QD=8.96;ReadPosRankSum=0.439;SNPEFF_AMINO_ACID_CHANGE=P595;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79663854_79664028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:27,23:51:99:487,0,834
17    79667275    rs62077184    C    T    73.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.96;MQ0=0;MQRankSum=0.406;QD=12.31;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,100
17    79667663    rs142478779    GCCAGCC    G    365.96    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=161.2288;IndelType=D;MQ=50.49;MQ0=0;MQRankSum=-1.769;QD=13.55;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:20,7:27:99:405,0,362
17    79667983    rs75950260    T    C    234.67    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9916;MQ=58.89;MQ0=0;MQRankSum=0.416;QD=11.17;ReadPosRankSum=-1.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:11,10:21:99:265,0,354
17    79668226    rs55837949    A    G    130.24    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.3;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HGS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329138    GT:AD:DP:GQ:PL    0/1:9,5:14:99:160,0,330
17    79682558    rs2072700    T    C    1199.28    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.177;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6827;MQ=59.62;MQ0=0;MQRankSum=0.89;QD=12.24;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=R243;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79682508_79682622;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541223    GT:AD:DP:GQ:PL    0/1:46,52:98:99:1229,0,1171
17    79686552    rs11868178    G    C    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331531    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    79686593    rs74006106    G    T    64.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=12.81;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331531    GT:AD:DP:GQ:PL    0/1:2,3:5:51.89:94,0,52
17    79812828    rs77099526    A    G    222.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9889;MQ=51.77;MQ0=0;QD=18.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P4HB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466567    GT:AD:DP:GQ:PL    1/1:1,11:12:24.05:256,24,0
17    79816926    rs1533756    C    T    162.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.741;QD=16.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P4HB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331483    GT:AD:DP:GQ:PL    0/1:4,6:10:99:193,0,138
17    79862882    rs146889521    C    G    553.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANAPC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344877    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:586,45,0
17    79872129    rs1879568    A    G    1987.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=32.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAFG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357736    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2021,159,0
17    79872241    rs1879569    A    G    1243.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=36.59;SNPEFF_AMINO_ACID_CHANGE=L232;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79872170_79872406;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536038    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1277,99,0
17    79891147    rs61747618    T    C    504.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.39;MQ0=0;QD=28.03;SNPEFF_AMINO_ACID_CHANGE=S301;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79890269_79891252;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329875    GT:AD:DP:GQ:PL    1/1:0,17:18:45.12:538,45,0
17    79893962    rs34419046    G    A    687.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;QD=34.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYADML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330655    GT:AD:DP:GQ:PL    1/1:0,20:20:57.10:721,57,0
17    79898644    rs2293098    G    A    40.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.51;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329875    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:71,0,26
17    79899272    rs4796856    A    G    66.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.3;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=S116P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79897522_79899719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYADML2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330655    GT:AD:DP:GQ:PL    0/1:2,3:5:64.17:96,0,64
17    79911164    rs78951919    A    AG    195.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=5;HaplotypeScore=11.4252;IndelType=I;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTUM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425009    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
17    79912103    rs4796851    C    T    245.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTUM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425009    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
17    79914661    rs35872546    T    C    318.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTUM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425009    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:352,27,0
17    79915035    rs34600945    C    T    287.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTUM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489218    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
17    79915629    rs36023555    A    G    49.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTUM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489218    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
17    79915647    rs35069988    A    G    47.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTUM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489218    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
17    79915863    rs34107062    A    G    164.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTUM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489218    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
17    79936986    rs55671960    T    C    726.57    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=1.003;DB;DP=56;Dels=0.0;FS=2.236;HRun=3;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=12.97;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPSCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306729    GT:AD:DP:GQ:PL    0/1:29,27:56:99:757,0,969
17    79954544    rs8074498    T    A    864.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.59;SNPEFF_AMINO_ACID_CHANGE=L175Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79954296_79954722;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPSCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344865    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:898,66,0
17    79972901    rs9895872    C    T    142.47    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.186;QD=12.95;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPSCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344865    GT:AD:DP:GQ:PL    0/1:6,5:11:99:172,0,205
17    79974731    rs13087    T    C    381.04    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=23;Dels=0.0;FS=9.368;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.85;QD=16.57;ReadPosRankSum=-0.157;SNPEFF_AMINO_ACID_CHANGE=D487;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79974676_79974745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPSCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306739    GT:AD:DP:GQ:PL    0/1:9,14:23:99:411,0,282
17    79977813    rs4969471    C    G    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPSCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306729    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
17    79980756    rs3934983    C    A    54.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=13.62;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306688    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:86,6,0
17    79982477    rs11659000    T    C    275.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=20;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.021;QD=13.76;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306688    GT:AD:DP:GQ:PL    0/1:10,10:20:99:305,0,350
17    79986156    rs72861736    C    T    43.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=7.23;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=A365V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79986110_79986187;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306688    GT:AD:DP:GQ:PL    0/1:3,3:6:68.86:73,0,69
17    79990728    rs72861739    C    T    464.64    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=2.575;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.63;MQ0=0;MQRankSum=0.728;QD=9.11;ReadPosRankSum=-0.687;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCXR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306869    GT:AD:DP:GQ:PL    0/1:32,19:51:99:495,0,892
17    79990972    rs66599033    CG    C    478.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=3;HaplotypeScore=43.5795;IndelType=D;MQ=60.72;MQ0=0;QD=31.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCXR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306869    GT:AD:DP:GQ:PL    1/1:1,14:15:42.13:521,42,0
17    79994019    rs8067668    A    G    64.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.061;QD=4.27;ReadPosRankSum=0.061;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306688    GT:AD:DP:GQ:PL    0/1:10,5:15:94.10:94,0,347
17    79994026    rs6502047    G    A    186.54    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.087;QD=10.36;ReadPosRankSum=-0.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306897    GT:AD:DP:GQ:PL    0/1:11,7:18:99:217,0,379
17    79994600    rs61739740    C    T    530.80    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=2.878;DB;DP=46;Dels=0.0;FS=1.189;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.245;QD=11.54;ReadPosRankSum=0.513;SNPEFF_AMINO_ACID_CHANGE=S115;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_79994597_79994639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCXR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306869    GT:AD:DP:GQ:PL    0/1:27,19:46:99:561,0,766
17    80006504    rs1128009    T    C    150.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306823    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:183,15,0
17    80006812    rs8069068    C    T    174.75    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.189;DB;DP=21;Dels=0.0;FS=9.705;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.109;QD=8.32;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310496    GT:AD:DP:GQ:PL    0/1:14,7:21:99:205,0,389
17    80006957    rs12948507    A    C    387.41    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.127;DB;DP=33;Dels=0.0;FS=5.121;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.38;QD=11.74;ReadPosRankSum=-1.862;SNPEFF_AMINO_ACID_CHANGE=H247Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80006907_80006992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFNG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429557    GT:AD:DP:GQ:PL    0/1:15,18:33:99:417,0,471
17    80007018    rs12939972    T    C    99.96    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;MQRankSum=-1.036;QD=7.14;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310496    GT:AD:DP:GQ:PL    0/1:5,9:14:73.03:130,0,73
17    80007055    rs62078730    T    C    41.46    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=-1.031;QD=3.77;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310496    GT:AD:DP:GQ:PL    0/1:5,6:11:71.46:71,0,175
17    80008392    rs9916764    G    T    207.87    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=58.66;MQ0=0;MQRankSum=-0.471;QD=14.85;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=A112;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80008278_80008431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFNG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429557    GT:AD:DP:GQ:PL    0/1:6,8:14:99:238,0,208
17    80008676    rs4464142    A    C    395.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310496    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:429,33,0
17    80013235    rs4969464    A    G    213.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_AMINO_ACID_CHANGE=V282;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80012774_80014267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392357    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
17    80014861    rs4969484    T    G    441.88    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.192;DB;DP=42;Dels=0.0;FS=1.193;HRun=0;HaplotypeScore=1.7005;MQ=60.0;MQ0=0;MQRankSum=-1.222;QD=10.52;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306796    GT:AD:DP:GQ:PL    0/1:23,19:42:99:472,0,757
17    80016452    rs4280314    C    A    345.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306823    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:378,30,0
17    80018714    rs58204115    C    T    207.95    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=17;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.578;QD=12.23;ReadPosRankSum=-0.998;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306823    GT:AD:DP:GQ:PL    0/1:8,9:17:99:238,0,276
17    80022656    rs34249409    C    CG    273.06    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.538;DB;DP=27;FS=3.067;HRun=3;HaplotypeScore=72.3289;IndelType=I;MQ=59.14;MQ0=0;MQRankSum=0.401;QD=10.11;ReadPosRankSum=-0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUS1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306796    GT:AD:DP:GQ:PL    0/1:18,9:27:99:312,0,402
17    80038952    rs4246444    T    G    119.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
17    80039028    rs4246445    A    G    139.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,7:8:15.03:172,15,0
17    80039481    rs1140616    G    A    1080.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_AMINO_ACID_CHANGE=I2134;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80039477_80039719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1113,84,0
17    80039789    rs62078736    T    C    121    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:154,15,0
17    80039790    rs62078737    G    A    126.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:159,15,0
17    80039806    rs62078739    C    A    48.80    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9933;MQ=44.1;MQ0=0;MQRankSum=-0.358;QD=9.76;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    0/1:2,3:5:21.41:79,0,21
17    80039818    rs57966241    G    C    92.95    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9562;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=15.49;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    0/1:1,5:6:18.39:123,0,18
17    80040607    rs4969465    T    C    264.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:297,24,0
17    80040639    rs17848942    G    A    165.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:198,15,0
17    80041466    rs2229425    G    A    83.67    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=7.61;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=S1756;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80041393_80041515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    0/1:7,4:11:99:114,0,241
17    80043349    rs17848939    C    T    201.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
17    80043739    rs2229422    A    G    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=1.026;SNPEFF_AMINO_ACID_CHANGE=A1247;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80043358_80043747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    0/1:2,2:4:64.74:71,0,65
17    80050272    rs17848925    G    A    129.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
17    80050554    rs72095082    CGG    C    73.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DB;DP=6;FS=3.979;HRun=12;HaplotypeScore=47.1201;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=0.731;QD=12.23;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:1,5:6:8.04:114,8,0
17    80051183    rs2228309    A    G    325.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_AMINO_ACID_CHANGE=N189;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80051095_80051295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:359,30,0
17    80053166    rs45555535    C    T    448.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8808;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=16.02;ReadPosRankSum=0.255;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    0/1:12,16:28:99:479,0,332
17    80054375    rs17848934    C    A    149.61    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.176;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.55;MQ0=0;MQRankSum=-0.57;QD=4.68;ReadPosRankSum=-0.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389641    GT:AD:DP:GQ:PL    0/1:22,10:32:99:180,0,700
17    80059487    rs1127678    C    T    167.90    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.887;QD=8.39;ReadPosRankSum=0.972;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FASN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306749    GT:AD:DP:GQ:PL    0/1:13,7:20:99:198,0,406
17    80059596    rs13949    T    C    1506.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_AMINO_ACID_CHANGE=R905G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80059346_80059742;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389641    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1540,117,0
17    80059758    rs7225637    G    A    270.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389641    GT:AD:DP:GQ:PL    1/1:0,12:12:24.07:304,24,0
17    80059891    rs11658040    C    T    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389641    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
17    80071049    rs7226049    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389641    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
17    80071244    rs7211808    T    C    321.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=A294;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80069868_80071641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324808    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:354,27,0
17    80071450    rs11653662    G    A    142.99    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=11;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=13.0;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=R226*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_17_80069868_80071641;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000324808    GT:AD:DP:GQ:PL    0/1:6,5:11:99:173,0,200
17    80085283    rs73360060    C    T    38.14    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=0.731;QD=7.63;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483145    GT:AD:DP:GQ:PL    0/1:1,4:5:24.41:68,0,24
17    80085295    rs74001545    C    T    79.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=15.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483145    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:112,9,0
17    80085326    rs62078305    G    A    257.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483145    GT:AD:DP:GQ:PL    1/1:0,12:12:21.07:290,21,0
17    80085341    rs62078306    A    G    430.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=22.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483145    GT:AD:DP:GQ:PL    1/1:1,18:19:39.11:464,39,0
17    80085633    rs11077969    A    G    956.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=M140T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80085568_80085784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324808    GT:AD:DP:GQ:PL    1/1:0,32:32:84.19:989,84,0
17    80085703    rs7213172    G    T    1375.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.29;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6971;MQ=58.55;MQ0=0;MQRankSum=-1.818;QD=28.65;ReadPosRankSum=-0.501;SNPEFF_AMINO_ACID_CHANGE=Q117K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80085568_80085784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324808    GT:AD:DP:GQ:PL    1/1:2,45:48:72.60:1408,73,0
17    80085916    rs11077970    C    T    319.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=26.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324808    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:352,27,0
17    80086386    rs7406162    C    T    384.32    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.23;MQ0=0;QD=22.61;SNPEFF_AMINO_ACID_CHANGE=A135T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80086369_80086473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392346    GT:AD:DP:GQ:PL    1/1:0,15:17:33.10:417,33,0
17    80086389    rs7406163    C    T    456.24    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.23;MQ0=0;QD=26.84;SNPEFF_AMINO_ACID_CHANGE=D134N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80086369_80086473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392346    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:489,39,0
17    80086395    rs4625783    T    C    429.92    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.05;MQ0=0;QD=26.87;SNPEFF_AMINO_ACID_CHANGE=R132G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80086369_80086473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392346    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:463,36,0
17    80086597    rs4459614    C    T    249.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324808    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
17    80092171    rs4789752    A    G    202.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324808    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
17    80120886    rs147067974    C    T    200.11    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.225;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.715;QD=14.29;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327026    GT:AD:DP:GQ:PL    0/1:6,8:14:99:230,0,190
17    80136631    rs6502084    T    C    209.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327026    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:242,21,0
17    80136649    .    C    T    91.32    PASS    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327026    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
17    80141493    rs11657047    C    T    36.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327026    GT:AD:DP:GQ:PL    0/1:2,2:4:66.54:67,0,72
17    80141907    rs71166198    G    GCGCA    462.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.863;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=198.1992;IndelType=I;MQ=51.39;MQ0=0;MQRankSum=-0.731;QD=18.49;ReadPosRankSum=0.863;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327026    GT:AD:DP:GQ:PL    1/1:12,7:25:1.08:500,1,0
17    80146089    rs4789729    G    A    178.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=10;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=17.9;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389641    GT:AD:DP:GQ:PL    0/1:3,6:10:64.19:209,0,64
17    80159566    rs8072670    T    C    651.25    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-1.056;QD=10.5;ReadPosRankSum=-0.495;SNPEFF_AMINO_ACID_CHANGE=E85;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80159414_80159828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389641    GT:AD:DP:GQ:PL    0/1:38,24:62:99:681,0,1165
17    80159665    rs11653797    G    A    1013.03    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.26;DB;DP=75;Dels=0.0;FS=1.945;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=1.574;QD=13.51;ReadPosRankSum=1.66;SNPEFF_AMINO_ACID_CHANGE=C52;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80159414_80159828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389641    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1043,0,1097
17    80195582    rs9303026    T    C    557.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.995;MQ=54.65;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=G312;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80195014_80195769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392339    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:590,48,0
17    80275253    rs3176829    T    C    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=9.04;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    0/1:1,2:4:32.73:66,0,33
17    80276261    rs11652368    G    A    211.98    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=14;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=15.14;ReadPosRankSum=0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    0/1:6,8:14:99:242,0,169
17    80276274    .    T    C    127.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.33;MQ0=0;MQRankSum=-2.517;QD=9.12;ReadPosRankSum=0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    0/1:8,6:14:99:158,0,268
17    80276306    rs11659122    T    C    319.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:353,30,0
17    80276368    rs9916810    T    C    165.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    1/1:0,10:10:18.04:198,18,0
17    80277044    rs72856119    G    A    262.56    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=22;Dels=0.0;FS=4.036;HRun=0;HaplotypeScore=1.4679;MQ=58.95;MQ0=0;MQRankSum=0.692;QD=11.93;ReadPosRankSum=1.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    0/1:12,10:22:99:293,0,285
17    80277088    rs72856121    G    A    336.23    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=2.989;DB;DP=29;Dels=0.0;FS=3.653;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.262;QD=11.59;ReadPosRankSum=-1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    0/1:17,12:29:99:366,0,350
17    80277252    rs62079490    G    A    233.26    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=2.287;DB;DP=36;Dels=0.0;FS=3.329;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.019;QD=6.48;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    0/1:25,11:36:99:263,0,629
17    80277590    rs7208826    T    C    285.47    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.448;QD=23.79;ReadPosRankSum=-0.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    0/1:1,11:12:6.91:315,0,7
17    80280865    rs11077986    G    A    147.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=18.5;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=P142;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80280754_80280887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SECTM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269389    GT:AD:DP:GQ:PL    0/1:2,6:8:63.81:178,0,64
17    80320003    rs11651514    C    G    508.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.283;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.2434;MQ=60.0;MQ0=0;MQRankSum=-2.217;QD=13.74;ReadPosRankSum=-0.483;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_17_80319756_80321652;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333437    GT:AD:DP:GQ:PL    0/1:16,20:37:99:538,0,491
17    80352138    rs6502106    T    C    737.76    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=3.643;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-1.326;QD=11.9;ReadPosRankSum=0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    0/1:39,23:62:99:768,0,1301
17    80352234    rs62079522    G    A    3037.67    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=6.12;DB;DP=226;Dels=0.0;FS=3.034;HRun=0;HaplotypeScore=3.7446;MQ=59.9;MQ0=0;MQRankSum=0.797;QD=13.44;ReadPosRankSum=0.959;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    0/1:121,105:226:99:3068,0,3376
17    80352303    rs62079523    G    A    2335.38    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.913;DB;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5669;MQ=59.89;MQ0=0;MQRankSum=-0.309;QD=13.66;ReadPosRankSum=2.636;SNPEFF_AMINO_ACID_CHANGE=P314S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80352207_80352419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329197    GT:AD:DP:GQ:PL    0/1:85,86:171:99:2365,0,2549
17    80352520    rs62079524    G    A    147.29    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=16.37;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    0/1:3,6:9:97.18:177,0,97
17    80355975    rs62079527    C    T    368.89    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.262;DB;DP=25;Dels=0.0;FS=10.307;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=1.569;QD=14.76;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    0/1:13,11:25:99:399,0,307
17    80356019    rs9905077    C    G    280.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=26;Dels=0.0;FS=3.682;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.026;QD=10.78;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    0/1:13,13:26:99:310,0,369
17    80356315    rs6502107    A    G    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    80367206    rs62080965    G    A    215.57    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.917;DB;DP=28;Dels=0.0;FS=1.73;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=7.7;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    0/1:17,11:28:99:246,0,472
17    80367353    rs7211306    G    A    266.50    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.333;QD=19.04;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    0/1:5,9:14:99:296,0,165
17    80373452    rs4789769    C    T    398.31    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.806;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.436;QD=13.28;ReadPosRankSum=0.686;SNPEFF_AMINO_ACID_CHANGE=P42;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80373274_80373503;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf101;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313056    GT:AD:DP:GQ:PL    0/1:16,14:30:99:428,0,444
17    80377690    rs1141463    T    G    264.55    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.658;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.797;QD=9.45;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=T5;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80377676_80377759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXDC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327949    GT:AD:DP:GQ:PL    0/1:15,13:28:99:295,0,437
17    80391684    rs4789773    A    G    315.42    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=17;Dels=0.0;FS=2.702;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=18.55;ReadPosRankSum=2.098;SNPEFF_AMINO_ACID_CHANGE=I145V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80391534_80391698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXDC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327949    GT:AD:DP:GQ:PL    0/1:7,10:17:99:345,0,232
17    80394530    rs4789777    G    T    78.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.64;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327949    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:109,0,29
17    80394883    rs12935995    C    T    265.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.266;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=-1.021;QD=13.29;ReadPosRankSum=0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327949    GT:AD:DP:GQ:PL    0/1:10,10:20:99:296,0,358
17    80396801    rs2379234    C    T    315.28    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.58;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.244;QD=11.26;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306645    GT:AD:DP:GQ:PL    0/1:15,13:28:99:345,0,430
17    80397484    rs28561791    A    G    1856.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.73;MQ0=0;QD=33.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306645    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1889,147,0
17    80399193    rs7501824    C    T    50.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;MQRankSum=0.573;QD=5.66;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C17orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306645    GT:AD:DP:GQ:PL    0/1:6,3:9:80.89:81,0,186
17    80400586    rs9648    T    G    103.35    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=7.95;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327949    GT:AD:DP:GQ:PL    0/1:7,6:13:99:133,0,257
17    80402296    rs7221125    G    A    202.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=10.15;ReadPosRankSum=-1.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327949    GT:AD:DP:GQ:PL    0/1:12,8:20:99:233,0,290
17    80404326    rs11077994    G    T    31.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.49;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEXDC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327949    GT:AD:DP:GQ:PL    0/1:5,2:7:61.39:61,0,183
17    80426550    rs66998113    TA    T    421.38    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.123;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=63.0343;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.425;QD=28.09;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309794    GT:AD:DP:GQ:PL    0/1:2,13:15:44.85:460,0,45
17    80426635    rs2306752    T    C    708.18    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.396;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.75;QD=15.4;ReadPosRankSum=-0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309794    GT:AD:DP:GQ:PL    0/1:21,25:46:99:738,0,691
17    80426988    rs8078595    G    T    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309794    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
17    80438858    rs144947306    C    A    558.44    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.603;DB;DP=61;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=4.9008;MQ=53.32;MQ0=0;MQRankSum=-0.785;QD=9.01;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309794    GT:AD:DP:GQ:PL    0/1:31,29:61:99:588,0,945
17    80443296    rs67634523    C    CAA    398.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.648;DB;DP=20;FS=0.0;HRun=11;HaplotypeScore=147.8086;IndelType=I;MQ=52.97;MQ0=0;MQRankSum=-0.549;QD=19.93;ReadPosRankSum=-0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412079    GT:AD:DP:GQ:PL    0/1:9,10:20:99:438,0,130
17    80443309    rs9890316    G    A    230.12    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=23;Dels=0.0;FS=3.067;HRun=2;HaplotypeScore=1.9774;MQ=54.77;MQ0=0;MQRankSum=-0.401;QD=10.01;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412079    GT:AD:DP:GQ:PL    0/1:9,14:23:99:260,0,270
17    80445942    .    A    G    97.78    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.187;DP=31;Dels=0.0;FS=36.424;HRun=4;HaplotypeScore=1.1567;MQ=56.17;MQ0=0;MQRankSum=-1.552;QD=3.15;ReadPosRankSum=-0.47;SNPEFF_AMINO_ACID_CHANGE=E368G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80445792_80446141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390006    GT:AD:DP:GQ:PL    0/1:18,13:31:99:128,0,615
17    80521092    rs4789795    A    G    69.53    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.38;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335241    GT:AD:DP:GQ:PL    0/1:1,3:4:26.55:100,0,27
17    80521135    rs4789796    T    C    104.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=14.91;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335241    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,103
17    80526139    rs2291395    A    G    114.46    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.553;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=58.71;MQ0=0;MQRankSum=0.251;QD=6.36;ReadPosRankSum=-0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335241    GT:AD:DP:GQ:PL    0/1:11,7:18:99:144,0,331
17    80529495    rs3794723    G    A    76.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.68;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335241    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,104
17    80529972    rs3751908    A    G    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527313    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:75,0,30
17    80540585    rs2306759    A    G    164.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=21;Dels=0.0;FS=2.409;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.037;QD=7.84;ReadPosRankSum=0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335241    GT:AD:DP:GQ:PL    0/1:14,7:21:99:195,0,475
17    80544170    rs12149970    C    G    138.07    MQFilter40    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3569;MQ=26.85;MQ0=5;MQRankSum=0.667;QD=7.27;ReadPosRankSum=-0.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    0/1:10,9:19:64.90:168,0,65
17    80544181    rs77385564    C    A    49.03    MQFilter40    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9813;MQ=26.67;MQ0=5;MQRankSum=0.715;QD=2.45;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    0/1:13,4:20:79.02:79,0,143
17    80544219    rs62079665    C    G    129.66    MQFilter40    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.691;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9891;MQ=25.41;MQ0=5;MQRankSum=-0.691;QD=7.2;ReadPosRankSum=-1.086;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    0/1:4,14:18:42.84:160,0,43
17    80544226    rs12950165    A    G    77.94    MQFilter40    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=9.6432;MQ=23.91;MQ0=5;MQRankSum=-0.898;QD=4.87;ReadPosRankSum=0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    0/1:2,14:16:48.84:108,0,49
17    80544232    rs35005400    A    G    70.72    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=18;Dels=0.0;FS=3.136;HRun=4;HaplotypeScore=7.5656;MQ=28.01;MQ0=5;MQRankSum=-1.093;QD=3.93;ReadPosRankSum=-0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    0/1:8,10:18:99:101,0,113
17    80544267    rs36028572    G    C    120.34    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.163;DB;DP=21;Dels=0.0;FS=9.792;HRun=0;HaplotypeScore=6.9366;MQ=33.47;MQ0=2;MQRankSum=0.813;QD=5.73;ReadPosRankSum=-1.464;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    0/1:14,7:21:99:150,0,200
17    80544280    rs76509345    G    A    41.78    MQFilter40;QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.979;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8307;MQ=33.69;MQ0=3;MQRankSum=0.718;QD=1.9;ReadPosRankSum=0.065;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    0/1:17,5:22:71.77:72,0,243
17    80544855    rs1387545    T    C    768.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:802,60,0
17    80544930    rs9914529    T    C    534.92    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=3.197;DB;DP=59;Dels=0.0;FS=5.359;HRun=0;HaplotypeScore=1.8154;MQ=59.61;MQ0=0;MQRankSum=-0.537;QD=9.07;ReadPosRankSum=0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    0/1:37,22:59:99:565,0,1146
17    80545156    rs6502124    A    G    1026.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=36.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526383    GT:AD:DP:GQ:PL    1/1:0,28:28:81.22:1059,81,0
17    80585033    rs2291392    T    A    1389.32    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.512;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.0748;MQ=59.81;MQ0=0;MQRankSum=-0.539;QD=11.58;ReadPosRankSum=0.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR45L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392325    GT:AD:DP:GQ:PL    0/1:64,56:120:99:1419,0,1965
17    80601769    rs66573578    TA    T    128.77    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=20.6844;IndelType=D;MQ=61.19;MQ0=0;MQRankSum=-0.729;QD=14.31;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR45L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392325    GT:AD:DP:GQ:PL    0/1:4,5:9:99:168,0,153
17    80615643    rs3751911    G    A    552.30    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=5.0;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.81;MQ0=0;MQRankSum=1.028;QD=14.16;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=R345W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80615539_80615781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB40B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538809    GT:AD:DP:GQ:PL    0/1:21,18:39:99:582,0,594
17    80619080    rs4789706    T    C    143.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269347    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
17    80622101    rs756072    G    A    38.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.7;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269347    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:68,0,31
17    80622290    rs2279393    A    G    166.79    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.445;DB;DP=27;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.119;QD=6.18;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269347    GT:AD:DP:GQ:PL    0/1:17,10:27:99:197,0,452
17    80622344    rs2279392    G    A    728.17    PASS    AB=0.351;AC=1;AF=0.50;AN=2;BaseQRankSum=1.829;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.302;QD=19.68;ReadPosRankSum=-0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269347    GT:AD:DP:GQ:PL    0/1:13,24:37:99:758,0,383
17    80622483    rs74002927    G    T    265.96    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.228;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.283;QD=11.08;ReadPosRankSum=1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269347    GT:AD:DP:GQ:PL    0/1:15,9:24:99:296,0,497
17    80656616    rs2243606    T    G    35.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB40B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269347    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
17    80674643    rs2250000    C    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.46;SNPEFF_AMINO_ACID_CHANGE=L4;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80674582_80674772;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3KRP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269373    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
17    80676946    rs111661651    A    ACCACCCC    2015.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=191.3319;IndelType=I;MQ=46.09;MQ0=0;QD=62.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3KRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269373    GT:AD:DP:GQ:PL    1/1:13,15:32:57.20:2057,57,0
17    80677005    rs2247055    T    C    294.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.25;MQ0=0;QD=22.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3KRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269373    GT:AD:DP:GQ:PL    1/1:0,13:13:30.07:327,30,0
17    80684245    rs7406285    C    G    498.85    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.732;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.585;QD=12.47;ReadPosRankSum=-0.802;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3KRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269373    GT:AD:DP:GQ:PL    0/1:22,18:40:99:529,0,757
17    80684638    rs2246103    T    C    1076.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=30.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3KRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269373    GT:AD:DP:GQ:PL    1/1:0,35:35:84.26:1110,84,0
17    80685126    rs2243446    T    C    784.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=29.05;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3KRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269373    GT:AD:DP:GQ:PL    1/1:0,27:27:69.20:817,69,0
17    80693705    rs2256322    A    G    110.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300784    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
17    80696410    rs2253149    A    C    1039.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=30.58;SNPEFF_AMINO_ACID_CHANGE=R18;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80695577_80696516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3K;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536165    GT:AD:DP:GQ:PL    1/1:0,34:34:84.23:1073,84,0
17    80696542    rs2253132    G    A    654.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FN3K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300784    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:688,51,0
17    80721648    rs7209909    C    G    61.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:94,9,0
17    80730479    rs117026521    C    T    947.53    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=5.7;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.34;MQ0=0;MQRankSum=-0.846;QD=15.04;ReadPosRankSum=-1.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    0/1:34,29:63:99:978,0,953
17    80730527    rs615630    T    C    857.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,28:28:78.20:890,78,0
17    80755615    rs36020328    C    CT    332.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.953;DB;DP=33;FS=2.831;HRun=15;HaplotypeScore=183.4809;IndelType=I;MQ=54.09;MQ0=0;MQRankSum=-0.318;QD=10.08;ReadPosRankSum=-1.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:12,21:33:5.89:373,6,0
17    80763983    rs582192    C    T    256.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
17    80767367    rs4986110    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
17    80786008    rs6502134    G    A    5949.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=59.02;MQ0=0;QD=33.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF750;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269394    GT:AD:DP:GQ:PL    1/1:0,177:177:99:5950,445,0
17    80786427    rs68009656    GC    G    2338.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;FS=0.0;HRun=8;HaplotypeScore=346.2751;IndelType=D;MQ=60.36;MQ0=0;QD=22.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF750;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269394    GT:AD:DP:GQ:PL    1/1:13,89:103:99:2380,248,0
17    80787871    rs34475134    TTTTG    T    305.77    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=61.0584;IndelType=D;MQ=61.64;MQ0=0;MQRankSum=0.817;QD=23.52;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF750;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543850    GT:AD:DP:GQ:PL    0/1:5,8:13:99:345,0,319
17    80788465    rs12938126    T    C    973.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=A168;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80788018_80788635;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF750;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543850    GT:AD:DP:GQ:PL    1/1:0,31:31:78.20:1006,78,0
17    80788492    rs12948179    A    G    993.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.67;MQ0=0;QD=28.4;SNPEFF_AMINO_ACID_CHANGE=P159;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80788018_80788635;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF750;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543850    GT:AD:DP:GQ:PL    1/1:0,35:35:81.24:1027,81,0
17    80790442    rs3744165    T    G    169.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
17    80827955    rs7222931    A    G    209.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
17    80842251    rs3744159    G    A    165.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
17    80858843    rs9894906    A    G    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
17    80863686    rs12938172    C    A    601.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.071;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9849;MQ=50.65;MQ0=0;MQRankSum=1.953;QD=27.34;ReadPosRankSum=2.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:3,19:22:5.82:633,6,0
17    80863857    rs2292971    T    C    1763.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=30.94;SNPEFF_AMINO_ACID_CHANGE=M231T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80863812_80863929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397466    GT:AD:DP:GQ:PL    1/1:0,56:57:99:1797,141,0
17    80865526    rs2085616    G    A    690.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:724,54,0
17    80865866    rs879715    T    C    75.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
17    80866427    rs8073910    G    T    213.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397466    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
17    80867281    rs2271916    C    A    1398.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397466    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1432,105,0
17    80867333    rs2271915    C    T    571.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397466    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:604,45,0
17    80867384    rs3841647    GC    G    218.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=50.9394;IndelType=D;MQ=58.63;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397466    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:260,21,0
17    80867499    rs6502012    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397466    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
17    80878389    rs1471197    A    G    74.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=24.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
17    80887244    rs1127986    T    C    1017.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_AMINO_ACID_CHANGE=D704;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80887238_80887376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334614    GT:AD:DP:GQ:PL    1/1:0,37:37:84.24:1051,84,0
17    80887451    rs2034962    A    G    186.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:219,18,0
17    80890638    rs898095    T    C    602.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:635,51,0
17    80895483    rs12051851    C    G    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
17    80895745    rs3785520    T    C    240.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.7;SNPEFF_AMINO_ACID_CHANGE=V853A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80895722_80895835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334614    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:273,21,0
17    80895769    rs3785521    A    G    374.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_AMINO_ACID_CHANGE=Y861C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80895722_80895835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334614    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:408,30,0
17    80895933    rs3785522    A    G    947.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.84;SNPEFF_AMINO_ACID_CHANGE=E1097G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80895925_80896012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355528    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:980,72,0
17    80896115    rs11077949    C    T    206.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.61;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269368    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
17    80897215    rs3744156    C    T    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320865    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
17    80899281    rs9390    G    A    253.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_AMINO_ACID_CHANGE=A1162;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80899275_80899359;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355528    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:286,21,0
17    80904844    rs7225887    C    T    69.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.22;SNPEFF_AMINO_ACID_CHANGE=A341T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80904755_80904859;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320865    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:102,9,0
17    80914988    rs1001865    G    T    1412.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539345    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1446,105,0
17    80915250    rs117451067    G    A    240.13    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=18;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.537;QD=13.34;ReadPosRankSum=-1.122;SNPEFF_AMINO_ACID_CHANGE=A282;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_80915235_80915370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNTL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320865    GT:AD:DP:GQ:PL    0/1:8,10:18:99:270,0,237
17    80923432    rs7217917    T    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
17    80962888    rs62076016    C    T    95.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=13.69;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320865    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,103
17    81043039    rs9908756    A    G    403.72    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.603;DB;DP=37;Dels=0.0;FS=1.364;HRun=1;HaplotypeScore=0.8667;MQ=58.23;MQ0=0;MQRankSum=0.263;QD=10.91;ReadPosRankSum=1.346;SNPEFF_AMINO_ACID_CHANGE=P132;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_17_81042814_81043199;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METRNL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320095    GT:AD:DP:GQ:PL    0/1:22,15:37:99:434,0,765
17    81050833    rs74775917    A    AG    183.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=15.1567;IndelType=I;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METRNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320095    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:225,15,0
17    81050982    rs7501742    G    C    369.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METRNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320095    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:403,30,0
17    81051007    rs7502442    G    T    285.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METRNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320095    GT:AD:DP:GQ:PL    1/1:0,10:10:24.05:319,24,0
17    81051887    rs7223467    T    G    346.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=54.49;MQ0=0;QD=24.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METRNL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320095    GT:AD:DP:GQ:PL    1/1:0,14:14:36.06:379,36,0
17    81188336    rs193273951    T    G    122.38    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.34;MQ0=0;QD=24.48;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC139099.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425566    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
18    47858    rs55932456    G    A    896.60    MQFilter40    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.695;DB;DP=125;Dels=0.0;FS=10.451;HRun=1;HaplotypeScore=0.8321;MQ=39.58;MQ0=31;MQRankSum=0.276;QD=7.17;ReadPosRankSum=-1.097;SNPEFF_AMINO_ACID_CHANGE=L289;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:84,41:125:99:927,0,1560
18    47898    rs55979329    C    T    269.59    MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=2.011;DB;DP=90;Dels=0.0;FS=13.149;HRun=0;HaplotypeScore=2.7413;MQ=22.2;MQ0=34;MQRankSum=1.399;QD=3.0;ReadPosRankSum=-0.046;SNPEFF_AMINO_ACID_CHANGE=R276Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:69,21:90:99:300,0,831
18    47948    rs55913776    C    T    659.23    MQFilter40    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=2.021;DB;DP=107;Dels=0.0;FS=0.964;HRun=0;HaplotypeScore=1.9891;MQ=31.66;MQ0=16;MQRankSum=2.508;QD=6.16;ReadPosRankSum=2.003;SNPEFF_AMINO_ACID_CHANGE=P259;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:74,31:107:99:689,0,1150
18    47974    rs4798099    G    T    559.89    HaplotypeScoreFilter13;MQFilter40    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=139;Dels=0.0;FS=16.833;HRun=0;HaplotypeScore=17.4639;MQ=35.47;MQ0=15;MQRankSum=-0.011;QD=4.03;ReadPosRankSum=0.554;SNPEFF_AMINO_ACID_CHANGE=R251;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:103,35:139:99:590,0,1564
18    48121    rs56279059    T    A    1328.78    MQFilter40    AB=0.631;AC=1;AF=0.50;AN=2;BaseQRankSum=4.744;DB;DP=250;DS;Dels=0.0;FS=4.879;HRun=1;HaplotypeScore=0.5784;MQ=30.94;MQ0=45;MQRankSum=-3.08;QD=5.32;ReadPosRankSum=0.798;SNPEFF_AMINO_ACID_CHANGE=I202L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:157,92:250:99:1359,0,2752
18    48125    rs55855602    G    A    1219.38    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.434;DB;DP=239;DS;Dels=0.0;FS=4.948;HRun=2;HaplotypeScore=1.1567;MQ=31.87;MQ0=41;MQRankSum=-2.534;QD=5.1;ReadPosRankSum=1.173;SNPEFF_AMINO_ACID_CHANGE=F200;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:152,87:239:99:1249,0,2856
18    48197    rs3812543    C    T    955.65    HaplotypeScoreFilter13;MQFilter40    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=4.941;DB;DP=233;DS;Dels=0.0;FS=26.609;HRun=0;HaplotypeScore=21.9463;MQ=25.33;MQ0=66;MQRankSum=-7.395;QD=4.1;ReadPosRankSum=-1.907;SNPEFF_AMINO_ACID_CHANGE=S176;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:92,141:233:99:986,0,1712
18    48338    .    G    A    87.89    MQFilter40;QDFilter2    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.426;DP=141;Dels=0.0;FS=8.619;HRun=0;HaplotypeScore=0.0;MQ=17.71;MQ0=56;MQRankSum=-0.981;QD=0.62;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=C129;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:98,43:141:99:118,0,1001
18    48365    rs12104021    G    C    457.43    MQFilter40    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8533;MQ=20.36;MQ0=38;MQRankSum=1.208;QD=3.34;ReadPosRankSum=0.348;SNPEFF_AMINO_ACID_CHANGE=V120;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:99,38:137:99:487,0,954
18    48371    rs12104022    G    A    504.71    MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.5;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8533;MQ=21.61;MQ0=32;MQRankSum=1.279;QD=3.74;ReadPosRankSum=0.202;SNPEFF_AMINO_ACID_CHANGE=D118;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:94,41:135:99:535,0,884
18    48387    rs4798106    G    A    56.49    MQFilter40;QDFilter2    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=3.127;DB;DP=133;Dels=0.0;FS=9.077;HRun=0;HaplotypeScore=0.0;MQ=23.73;MQ0=26;MQRankSum=-3.525;QD=0.42;ReadPosRankSum=-0.664;SNPEFF_AMINO_ACID_CHANGE=T113M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:91,42:133:86.48:86,0,1646
18    48398    rs111383448    G    A    76.27    MQFilter40;QDFilter2    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.265;DB;DP=129;Dels=0.0;FS=4.362;HRun=0;HaplotypeScore=0.0;MQ=25.48;MQ0=15;MQRankSum=-2.253;QD=0.59;ReadPosRankSum=-1.265;SNPEFF_AMINO_ACID_CHANGE=G109;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:83,46:129:99:106,0,1731
18    48399    .    C    A    75.29    MQFilter40;QDFilter2    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.583;DP=131;Dels=0.0;FS=2.352;HRun=0;HaplotypeScore=0.0;MQ=25.45;MQ0=15;MQRankSum=-2.124;QD=0.57;ReadPosRankSum=-1.827;SNPEFF_AMINO_ACID_CHANGE=G109V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47390_48447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:82,49:131:99:105,0,1771
18    48459    rs12104036    C    T    204.79    MQFilter40    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.445;DB;DP=93;Dels=0.0;FS=3.841;HRun=0;HaplotypeScore=0.9159;MQ=26.65;MQ0=14;MQRankSum=0.362;QD=2.2;ReadPosRankSum=-2.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:67,25:93:99:235,0,1000
18    48476    rs12104037    C    T    103.89    MQFilter40;QDFilter2    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=66;Dels=0.0;FS=5.184;HRun=0;HaplotypeScore=0.9159;MQ=28.55;MQ0=14;MQRankSum=0.455;QD=1.57;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:49,17:66:99:134,0,859
18    49110    .    A    AGAAGGACGGGGGTCTCACCGCTGGCCTCGTGGTGGTACACGTTG    346.40    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DP=22;FS=3.01;HRun=0;HaplotypeScore=618.6335;IndelType=I;MQ=46.68;MQ0=0;MQRankSum=-1.03;QD=15.06;ReadPosRankSum=2.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    0/1:16,2:22:99:385,0,1276
18    49490    rs12954938    T    C    52.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=36.07;MQ0=0;QD=10.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:84,6,0
18    49546    rs62075716    G    A    86.79    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.19;MQ0=0;QD=10.85;SNPEFF_AMINO_ACID_CHANGE=I4;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_49501_49557;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    1/1:0,8:8:12.02:119,12,0
18    49548    rs12955069    T    G    79.96    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.19;MQ0=0;QD=9.99;SNPEFF_AMINO_ACID_CHANGE=I4L;SNPEFF_CODON_CHANGE=Atc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_49501_49557;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    1/1:0,8:8:12.01:112,12,0
18    49549    rs62075749    T    C    86.77    MQFilter40;SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.19;MQ0=0;QD=10.85;SNPEFF_AMINO_ACID_CHANGE=E3;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_49501_49557;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    1/1:0,8:8:12.02:119,12,0
18    49625    rs149871695    C    T    87.19    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.58;MQ0=0;MQRankSum=0.736;QD=14.53;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-683L23.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308911    GT:AD:DP:GQ:PL    1/1:1,5:6:9.03:119,9,0
18    112353    rs111981694    G    A    44.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=14.0;MQ0=8;QD=3.44;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:8,5:13:8.97:77,9,0
18    112502    .    G    A    38.78    MQFilter40    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DP=14;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=6.6583;MQ=22.61;MQ0=7;MQRankSum=-0.406;QD=2.77;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,8:14:68.77:69,0,70
18    112535    rs9284390    G    A    90.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=30.31;MQ0=1;QD=10.09;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:9:11.98:123,12,0
18    118580    .    T    C    187.43    MQFilter40    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.704;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.23;MQ0=18;MQRankSum=-2.142;QD=2.98;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,33:63:99:217,0,275
18    120645    rs8096198    C    T    37.32    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=44.58;MQ0=0;MQRankSum=-2.7;QD=2.87;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,4:13:67.31:67,0,289
18    166710    rs113002946    TTAAAA    T    635.47    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=5.062;DB;DP=40;FS=3.99;HRun=0;HaplotypeScore=204.9957;IndelType=D;MQ=58.18;MQ0=0;MQRankSum=0.156;QD=15.89;ReadPosRankSum=-0.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    0/1:26,14:40:99:674,0,2297
18    166819    rs563155    T    C    510.19    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.77;DB;DP=49;Dels=0.0;FS=4.395;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;MQRankSum=0.21;QD=10.41;ReadPosRankSum=0.05;SNPEFF_AMINO_ACID_CHANGE=N65;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_166787_166819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    0/1:25,24:49:99:540,0,807
18    196465    rs1299113    G    A    75.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:107,9,0
18    196829    rs655781    G    A    1415.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1449,108,0
18    196926    rs35399373    T    TC    341.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=14.868;IndelType=I;MQ=60.0;MQ0=0;QD=42.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:383,24,0
18    197741    rs35553249    AT    A    78.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=12;FS=0.0;HRun=11;HaplotypeScore=37.4612;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.56;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    0/1:6,6:12:98:118,0,98
18    199557    rs566748    T    A    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
18    203081    rs471274    A    C    1779.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1813,132,0
18    204780    rs61607000    A    G    648.99    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=45.89;MQ0=0;MQRankSum=2.208;QD=13.52;ReadPosRankSum=1.114;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    0/1:23,25:48:99:679,0,520
18    204815    rs56806027    T    A    473.71    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=25.9564;MQ=32.22;MQ0=0;QD=16.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    1/1:0,28:28:54.06:507,54,0
18    204816    rs4039610    T    TAAAAA    2652.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=232.8605;IndelType=I;MQ=29.0;MQ0=0;QD=98.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    1/1:1,26:27:81.28:2694,81,0
18    214519    rs142588910    A    ATTG    644.65    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.649;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=96.2485;IndelType=I;MQ=55.27;MQ0=0;MQRankSum=-0.9;QD=23.02;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    0/1:17,10:27:99:684,0,597
18    214959    rs489947    A    G    1703.34    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.863;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8822;MQ=60.0;MQ0=0;MQRankSum=-1.403;QD=16.38;ReadPosRankSum=0.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    0/1:50,54:104:99:1733,0,1505
18    215299    rs644363    A    T    69.14    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=6.91;ReadPosRankSum=-2.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261601    GT:AD:DP:GQ:PL    0/1:6,4:10:99:99,0,221
18    219029    rs1784834    G    A    529.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.1;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:563,42,0
18    219072    rs1784833    A    G    384.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.25;MQ0=0;QD=29.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:417,30,0
18    224184    rs631343    C    G    1478.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1511,111,0
18    252559    rs657138    G    A    3923.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.8;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=D219;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_252539_252612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    1/1:0,114:115:99:3924,289,0
18    260108    rs74972597    TA    T    988.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=49;FS=0.0;HRun=11;HaplotypeScore=215.9404;IndelType=D;MQ=61.29;MQ0=0;MQRankSum=1.193;QD=20.18;ReadPosRankSum=0.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    1/1:5,43:49:99:1031,102,0
18    260140    rs72856275    T    A    1308.87    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=5.003;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.22;MQ0=0;MQRankSum=-0.952;QD=15.96;ReadPosRankSum=-0.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    0/1:36,45:82:99:1339,0,1038
18    260504    rs655983    T    C    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
18    264012    rs652504    G    A    1385.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.894;DB;DP=98;Dels=0.0;FS=1.946;HRun=0;HaplotypeScore=4.0424;MQ=59.57;MQ0=0;MQRankSum=0.837;QD=14.14;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261600    GT:AD:DP:GQ:PL    0/1:49,49:98:99:1416,0,1289
18    331506    rs505110    G    A    81.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.41;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400256    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:112,0,21
18    331546    rs609224    C    T    69.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.62;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400256    GT:AD:DP:GQ:PL    0/1:3,3:6:96.60:100,0,97
18    334758    rs2305026    T    C    538.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=P600;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_334742_335230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400256    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:571,45,0
18    335316    rs2012143    A    C    424.32    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.469;DB;DP=22;Dels=0.0;FS=3.882;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.801;QD=19.29;ReadPosRankSum=2.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400256    GT:AD:DP:GQ:PL    0/1:9,13:22:99:454,0,301
18    346821    rs3826628    C    T    561.47    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=46;Dels=0.0;FS=2.561;HRun=0;HaplotypeScore=1.933;MQ=59.5;MQ0=0;MQRankSum=1.097;QD=12.21;ReadPosRankSum=0.897;SNPEFF_AMINO_ACID_CHANGE=T267;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_346295_347341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400256    GT:AD:DP:GQ:PL    0/1:26,20:46:99:591,0,780
18    348265    rs8085115    T    C    79.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.92;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400256    GT:AD:DP:GQ:PL    0/1:2,3:5:53.87:110,0,54
18    357570    rs685658    T    C    1282.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400256    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1315,99,0
18    618124    rs518471    T    C    1981.86    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.637;DB;DP=117;Dels=0.0;FS=1.862;HRun=1;HaplotypeScore=3.4099;MQ=59.61;MQ0=0;MQRankSum=0.687;QD=16.94;ReadPosRankSum=1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    0/1:53,64:117:99:2012,0,1684
18    618201    rs16947455    C    T    639.13    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=3.595;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.8108;MQ=58.95;MQ0=0;MQRankSum=1.01;QD=14.53;ReadPosRankSum=0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    0/1:23,21:44:99:669,0,618
18    624631    rs505140    T    G    172.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
18    624783    rs495688    A    G    684.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:717,54,0
18    624824    rs495799    T    C    1148.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1182,87,0
18    625070    rs498466    G    A    796.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:0,22:22:60.20:829,60,0
18    627009    .    A    AG    145.67    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=244.3851;IndelType=I;MQ=29.0;MQ0=0;QD=18.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:2,6:8:22.80:188,23,0
18    627019    .    G    GA    182.81    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=3;HaplotypeScore=287.301;IndelType=I;MQ=29.0;MQ0=0;QD=16.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:2,9:11:28.87:225,29,0
18    627026    .    AG    A    168.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DP=11;FS=0.0;HRun=1;HaplotypeScore=279.4592;IndelType=D;MQ=29.0;MQ0=0;MQRankSum=0.158;QD=15.3;ReadPosRankSum=-1.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:0,11:11:19.98:210,20,0
18    627044    rs66514874    C    T    294.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.6;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:0,17:17:27.08:328,27,0
18    627629    rs540094    A    G    332.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
18    627701    rs541787    C    T    164.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
18    645176    rs565034    C    A    305.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323813    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:338,27,0
18    649759    rs1058151    T    C    223.27    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.435;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=55.52;MQ0=0;MQRankSum=1.482;QD=13.95;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLUL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338387    GT:AD:DP:GQ:PL    0/1:7,9:16:99:253,0,227
18    662522    rs2925470    T    A    35.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=8.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYMS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323224    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
18    724612    rs537141    A    G    2143.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=L482;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_721592_724632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YES1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314574    GT:AD:DP:GQ:PL    1/1:1,64:65:99:2177,159,0
18    905537    rs2231183    T    C    549.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCYAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269200    GT:AD:DP:GQ:PL    1/1:0,18:18:48.12:582,48,0
18    907710    rs2856966    A    G    168.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.04;SNPEFF_AMINO_ACID_CHANGE=D193G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_907660_907791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCYAP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450565    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:201,15,0
18    909561    rs2231187    A    G    3045.86    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.939;DB;DP=224;Dels=0.0;FS=1.63;HRun=0;HaplotypeScore=3.2316;MQ=59.48;MQ0=0;MQRankSum=-0.667;QD=13.6;ReadPosRankSum=-0.176;SNPEFF_AMINO_ACID_CHANGE=K152;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_909447_909636;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCYAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269200    GT:AD:DP:GQ:PL    0/1:113,109:224:99:3076,0,3388
18    1278665    rs1595005    C    T    570.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269201    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:603,45,0
18    2538788    rs11663148    T    C    73.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=-1.537;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319888    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,102
18    2539016    rs8084295    C    G    3177.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_AMINO_ACID_CHANGE=V468L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_2537524_2539144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319888    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3211,232,0
18    2547500    rs2677879    G    T    373.77    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.012;DB;DP=34;Dels=0.0;FS=3.456;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.145;QD=10.99;ReadPosRankSum=0.728;SNPEFF_AMINO_ACID_CHANGE=Q310K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_2547354_2547528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=METTL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319888    GT:AD:DP:GQ:PL    0/1:19,15:34:99:404,0,551
18    2577587    rs2248156    A    G    35.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.97;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261597    GT:AD:DP:GQ:PL    0/1:4,2:6:65.82:66,0,146
18    2585077    rs6506019    G    A    373.38    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DB;DP=29;Dels=0.0;FS=7.368;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.161;QD=12.88;ReadPosRankSum=-1.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261597    GT:AD:DP:GQ:PL    0/1:15,14:29:99:403,0,510
18    2587993    rs2271754    A    T    222    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=13.06;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261597    GT:AD:DP:GQ:PL    0/1:9,8:17:99:252,0,260
18    2598873    rs4798003    C    G    438.28    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.334;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.068;QD=19.92;ReadPosRankSum=2.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261597    GT:AD:DP:GQ:PL    0/1:9,13:22:99:468,0,273
18    2601622    rs1442342    T    C    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261597    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
18    2606596    rs33953561    CTT    C    191.60    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.534;DB;DP=15;FS=0.0;HRun=3;HaplotypeScore=48.2626;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=12.77;ReadPosRankSum=0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261597    GT:AD:DP:GQ:PL    0/1:9,6:15:99:231,0,477
18    2610978    rs3817350    G    A    462.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=38.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261597    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:495,36,0
18    2616320    rs1983345    G    A    53.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.63;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543946    GT:AD:DP:GQ:PL    0/1:4,3:7:83.40:83,0,122
18    2616457    rs1983346    G    C    687.83    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.018;DB;DP=52;Dels=0.0;FS=3.937;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.073;QD=13.23;ReadPosRankSum=-0.22;SNPEFF_AMINO_ACID_CHANGE=A605P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_2616436_2616634;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDC80;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261597    GT:AD:DP:GQ:PL    0/1:27,25:52:99:718,0,871
18    2656248    rs2430853    G    C    378.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=27.01;SNPEFF_AMINO_ACID_CHANGE=A58;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_2655886_2656260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,14:14:33.09:411,33,0
18    2666046    rs9947882    A    C    533.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:566,42,0
18    2688163    rs1561820    C    A    188.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:222,18,0
18    2688798    rs637651    G    A    354.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:388,30,0
18    2698125    rs626994    T    C    150.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:183,15,0
18    2705633    rs8090967    T    A    321.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
18    2705675    rs8090988    T    A    524.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.495;DB;DP=29;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9996;MQ=59.2;MQ0=0;MQRankSum=-0.867;QD=18.1;ReadPosRankSum=0.619;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:1,28:29:54.11:558,54,0
18    2707619    rs2276092    G    A    2158.66    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.25;DB;DP=168;Dels=0.0;FS=1.216;HRun=0;HaplotypeScore=4.7853;MQ=59.15;MQ0=0;MQRankSum=-0.927;QD=12.85;ReadPosRankSum=-0.04;SNPEFF_AMINO_ACID_CHANGE=V708I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_2707561_2707643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    0/1:88,80:168:99:2189,0,2793
18    2718603    rs28446296    G    T    264.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:298,24,0
18    2726365    rs16943716    C    G    1095.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1128,99,0
18    2728740    rs145031919    GT    G    242.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=102.9707;IndelType=D;MQ=60.45;MQ0=0;QD=11.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:7,13:21:37.84:284,38,0
18    2729632    rs60929090    T    C    67.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:99,9,0
18    2741050    rs28377858    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
18    2750238    rs2304860    A    G    1085.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,29:29:87.27:1118,87,0
18    2751475    rs300293    A    G    1121.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1155,84,0
18    2761953    rs9954465    A    G    633.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:667,51,0
18    2771516    rs300291    G    T    3010.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9832;MQ=59.51;MQ0=0;QD=32.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3044,250,0
18    2784404    rs35853884    TGAAA    T    2946.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=259.1919;IndelType=D;MQ=53.57;MQ0=0;QD=61.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMCHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261598    GT:AD:DP:GQ:PL    1/1:0,48:48:99:2988,144,0
18    2891847    rs3826638    C    T    536.19    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.67;DB;DP=47;Dels=0.0;FS=1.121;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.33;QD=11.41;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=R574;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_2890559_2892484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMILIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254528    GT:AD:DP:GQ:PL    0/1:24,23:47:99:566,0,719
18    2909643    rs62075049    G    A    435.37    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.81;DB;DP=49;Dels=0.0;FS=1.267;HRun=1;HaplotypeScore=1.8218;MQ=59.62;MQ0=0;MQRankSum=-0.674;QD=8.89;ReadPosRankSum=-1.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMILIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254528    GT:AD:DP:GQ:PL    0/1:31,18:49:99:465,0,1009
18    2909700    rs56288451    C    T    723.16    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.597;DB;DP=59;Dels=0.0;FS=1.008;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-1.327;QD=12.26;ReadPosRankSum=0.084;SNPEFF_AMINO_ACID_CHANGE=P180S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_2909689_2909817;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMILIN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308080    GT:AD:DP:GQ:PL    0/1:34,25:59:99:753,0,1063
18    2909831    rs607411    C    G    242.31    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.249;DB;DP=35;Dels=0.0;FS=1.599;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.208;QD=6.92;ReadPosRankSum=1.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMILIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254528    GT:AD:DP:GQ:PL    0/1:25,10:35:99:272,0,750
18    2920288    rs3745012    G    A    294.88    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.666;DB;DP=32;Dels=0.0;FS=12.763;HRun=0;HaplotypeScore=0.6651;MQ=59.28;MQ0=0;MQRankSum=-0.487;QD=9.22;ReadPosRankSum=-0.019;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261596    GT:AD:DP:GQ:PL    0/1:20,12:32:99:325,0,559
18    2920725    rs3737514    A    T    264.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.416;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=58.45;MQ0=0;MQRankSum=-0.766;QD=17.61;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261596    GT:AD:DP:GQ:PL    0/1:6,9:15:99:294,0,209
18    2921444    rs2282635    T    C    726.81    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.801;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3391;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.8;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261596    GT:AD:DP:GQ:PL    0/1:21,25:46:99:757,0,737
18    2921777    rs2282636    T    C    275.45    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.003;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=21.19;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261596    GT:AD:DP:GQ:PL    0/1:4,9:13:99:305,0,125
18    2934536    rs3765622    G    C    170.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=18.9;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261596    GT:AD:DP:GQ:PL    0/1:3,6:9:98.14:200,0,98
18    2937646    rs3826637    A    G    174.21    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.532;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.543;QD=8.71;ReadPosRankSum=-1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455369    GT:AD:DP:GQ:PL    0/1:13,7:20:99:204,0,368
18    2938147    rs9961969    G    A    148.84    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=18.61;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455369    GT:AD:DP:GQ:PL    0/1:3,5:8:99:179,0,102
18    2954439    rs7226624    C    T    314.98    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.583;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=15.75;ReadPosRankSum=0.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455221    GT:AD:DP:GQ:PL    0/1:9,11:20:99:345,0,321
18    2982439    rs680085    G    A    78.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=13.01;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261596    GT:AD:DP:GQ:PL    0/1:2,4:6:52.74:108,0,53
18    2982817    rs1539792    C    A    1488.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=58.99;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261596    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1521,120,0
18    3075503    rs10667835    C    CAAA    6686.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;FS=0.0;HRun=1;HaplotypeScore=254.2708;IndelType=I;MQ=57.34;MQ0=0;QD=68.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:1,92:97:99:6686,292,0
18    3084152    rs8096747    C    T    362.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:396,30,0
18    3085191    rs148266515    AT    A    368.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.977;DB;DP=37;FS=0.0;HRun=11;HaplotypeScore=266.4438;IndelType=D;MQ=51.63;MQ0=0;MQRankSum=0.3;QD=9.95;ReadPosRankSum=0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:18,19:37:1.77:406,2,0
18    3089522    rs948298    G    T    1760.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1794,129,0
18    3089677    rs55715846    A    G    373.68    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.996;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=20.76;ReadPosRankSum=0.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    0/1:7,11:18:99:404,0,238
18    3094377    rs112006095    GA    G    191.27    PASS    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=27;FS=0.0;HRun=15;HaplotypeScore=145.0206;IndelType=D;MQ=58.22;MQ0=0;MQRankSum=0.773;QD=7.08;ReadPosRankSum=-0.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    0/1:11,14:27:1.36:229,0,1
18    3100051    rs6506059    T    C    1403.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1437,111,0
18    3100429    rs7232329    G    A    3221.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.602;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.748;QD=33.21;ReadPosRankSum=-1.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:1,96:97:99:3254,202,0
18    3102257    rs35205553    C    G    112.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:145,12,0
18    3112096    rs8096115    G    T    90.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
18    3112120    rs8084318    T    C    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
18    3112231    rs8096379    G    C    1149.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,32:32:90.27:1182,90,0
18    3112568    rs8097874    C    A    332.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
18    3112621    rs12606145    G    A    316.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:349,27,0
18    3120060    rs6506068    G    A    283.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:317,24,0
18    3141689    rs6506070    G    A    126.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
18    3151536    rs62076870    G    A    201.96    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.938;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=57.64;MQ0=0;MQRankSum=0.386;QD=13.46;ReadPosRankSum=-2.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    0/1:7,8:15:99:232,0,144
18    3164129    rs9958517    A    G    381.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:414,30,0
18    3164385    rs11659820    C    T    1228.81    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.372;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.372;QD=13.65;ReadPosRankSum=-0.145;SNPEFF_AMINO_ACID_CHANGE=R464;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_3164276_3164437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    0/1:47,43:90:99:1259,0,1439
18    3169126    rs9962984    C    T    78.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=0.406;QD=13.07;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    0/1:3,3:6:67.96:108,0,68
18    3176040    rs8099021    C    G    1872.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_AMINO_ACID_CHANGE=G341A;SNPEFF_CODON_CHANGE=gGa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_3176040_3176132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1905,150,0
18    3188976    rs1962519    A    G    1695.31    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=118;Dels=0.0;FS=7.416;HRun=1;HaplotypeScore=5.1521;MQ=59.41;MQ0=0;MQRankSum=-0.307;QD=14.37;ReadPosRankSum=-0.307;SNPEFF_AMINO_ACID_CHANGE=S181P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_3188746_3189085;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    0/1:57,60:118:99:1725,0,1690
18    3214918    rs7232679    G    C    141.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=13.222;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=14.18;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    0/1:5,5:10:99:172,0,128
18    3215030    rs9964300    C    A    290.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.817;DB;DP=21;Dels=0.0;FS=18.921;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=13.83;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=A64;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_3214932_3215249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYOM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261606    GT:AD:DP:GQ:PL    0/1:9,12:21:99:320,0,213
18    3253048    rs716351    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217652    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
18    3253543    rs1791105    G    A    206.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9778;MQ=60.0;MQ0=0;MQRankSum=-0.174;QD=12.92;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217652    GT:AD:DP:GQ:PL    0/1:8,8:16:99:237,0,270
18    3253569    rs6417016    C    T    103.39    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=10.34;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217652    GT:AD:DP:GQ:PL    0/1:6,4:10:99:133,0,187
18    3272744    rs7242012    A    G    93.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,8:8:12.02:126,12,0
18    3272855    rs6506099    C    T    1919.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.35;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1953,144,0
18    3272874    rs7407072    T    A    1651.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9162;MQ=59.09;MQ0=0;QD=26.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,62:63:99:1685,147,0
18    3273153    rs7407045    C    T    796.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:829,60,0
18    3277162    rs1954839    A    T    269.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:303,27,0
18    3277237    rs10853294    G    T    1262.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,33:33:96.32:1296,96,0
18    3277466    rs6506100    T    C    853.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=18.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,45:45:99:886,105,0
18    3277467    rs6506101    G    A    855.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=19.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,45:45:99:888,105,0
18    3277691    rs6506102    A    T    624.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYL12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237500    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:658,48,0
18    3447871    rs151472    T    C    423.23    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.771;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.14;QD=15.68;ReadPosRankSum=-0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401449    GT:AD:DP:GQ:PL    0/1:13,14:27:99:453,0,421
18    3451896    rs11571508    G    A    187.08    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.025;DB;DP=15;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=1.8255;MQ=58.45;MQ0=0;MQRankSum=-0.058;QD=12.47;ReadPosRankSum=0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551557    GT:AD:DP:GQ:PL    0/1:8,7:15:99:217,0,216
18    3452222    rs11571510    CT    C    294.65    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.0;DB;DP=21;FS=8.512;HRun=1;HaplotypeScore=74.5229;IndelType=D;MQ=59.27;MQ0=0;MQRankSum=-0.122;QD=14.03;ReadPosRankSum=-1.511;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_18_3451675_3452380;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGIF1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000330513    GT:AD:DP:GQ:PL    0/1:9,12:21:99:334,0,318
18    3457539    rs76540437    A    G    459.25    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.585;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=12.09;ReadPosRankSum=1.262;SNPEFF_AMINO_ACID_CHANGE=P120;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_3457363_3458121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGIF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345133    GT:AD:DP:GQ:PL    0/1:21,17:38:99:489,0,704
18    3457607    rs2229333    C    T    635    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.574;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.471;QD=17.16;ReadPosRankSum=0.114;SNPEFF_AMINO_ACID_CHANGE=P143L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_3457363_3458121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGIF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345133    GT:AD:DP:GQ:PL    0/1:15,22:37:99:665,0,366
18    3580191    rs582324    T    C    868.03    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.332;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=53.53;MQ0=0;MQRankSum=1.026;QD=17.36;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315677    GT:AD:DP:GQ:PL    0/1:22,28:50:99:898,0,669
18    3580742    rs475528    A    G    169.28    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.179;QD=18.81;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315677    GT:AD:DP:GQ:PL    0/1:2,7:9:58.92:199,0,59
18    3582272    rs11662259    A    C    417.90    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.417;DB;DP=36;Dels=0.0;FS=1.478;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.738;QD=11.61;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315677    GT:AD:DP:GQ:PL    0/1:21,15:36:99:448,0,701
18    3742572    rs3745050    C    G    515.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315677    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:548,39,0
18    3742713    rs11873533    C    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315677    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
18    5292030    rs620652    A    G    2217.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=59.65;MQ0=0;QD=33.6;SNPEFF_AMINO_ACID_CHANGE=T59;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_5289018_5292203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP161;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357006    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2250,172,0
18    5292207    rs11347006    CA    C    286.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.066;DB;DP=25;FS=0.0;HRun=13;HaplotypeScore=91.5569;IndelType=D;MQ=60.38;MQ0=0;MQRankSum=0.996;QD=11.47;ReadPosRankSum=-0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP161;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357006    GT:AD:DP:GQ:PL    1/1:5,19:25:13.09:328,13,0
18    5407839    rs2874686    C    T    416.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:450,33,0
18    5407911    rs2322093    A    G    200.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
18    5410574    rs3817466    A    G    1169.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.2;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=T426;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_5410565_5410618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540638    GT:AD:DP:GQ:PL    1/1:0,39:39:90.29:1202,90,0
18    5420021    rs3752061    A    G    792.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.476;QD=28.3;ReadPosRankSum=1.605;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:1,27:28:69.21:825,69,0
18    5423631    rs12607210    A    T    217.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
18    5433570    rs2272130    A    C    326.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:360,27,0
18    5433722    rs3931700    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
18    5437961    rs5822861    T    TC    932.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=133.8023;IndelType=I;MQ=59.94;MQ0=0;QD=42.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:1,21:22:66.22:975,66,0
18    5437967    rs2322094    C    T    912.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.95;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:946,69,0
18    5478091    rs2322102    C    G    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341928    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
18    5630531    rs4083186    G    A    1165.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=P37L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_5630376_5630640;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542652    GT:AD:DP:GQ:PL    1/1:0,36:36:90.28:1198,90,0
18    5630676    rs56114101    G    T    73.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.33;ReadPosRankSum=-1.537;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542652    GT:AD:DP:GQ:PL    0/1:3,3:6:67.51:104,0,68
18    5630689    rs9952048    G    C    37.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.6;ReadPosRankSum=1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542652    GT:AD:DP:GQ:PL    0/1:2,3:5:67.98:68,0,70
18    5956116    rs3737351    G    A    584.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284898    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:618,45,0
18    5956145    rs3737352    T    C    1213.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284898    GT:AD:DP:GQ:PL    1/1:0,38:38:90.30:1247,90,0
18    5956238    rs3737353    C    T    2760.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.71;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=G422D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_5954713_5956386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535782    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2793,211,0
18    5956425    rs3737354    C    T    2088.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284898    GT:AD:DP:GQ:PL    1/1:0,57:58:99:2121,160,0
18    5956483    rs3737357    G    C    813.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284898    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:846,66,0
18    5956502    rs34472471    GCT    G    637.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=137.5084;IndelType=D;MQ=59.24;MQ0=0;QD=39.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284898    GT:AD:DP:GQ:PL    1/1:1,15:16:45.15:680,45,0
18    5960036    .    TACACAC    T    686.54    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=0;HaplotypeScore=254.8889;IndelType=D;MQ=29.96;MQ0=0;QD=57.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284898    GT:AD:DP:GQ:PL    1/1:3,9:12:34:729,34,0
18    5960060    rs10658145    C    CGT    1186.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.714;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=292.551;IndelType=I;MQ=44.34;MQ0=0;MQRankSum=-0.962;QD=45.63;ReadPosRankSum=1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284898    GT:AD:DP:GQ:PL    1/1:10,16:26:32.50:1228,32,0
18    5960165    rs505559    G    A    1848.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284898    GT:AD:DP:GQ:PL    1/1:1,63:64:99:1881,144,0
18    6462642    rs3933539    C    G    496.97    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.52;MQ0=0;MQRankSum=-0.192;QD=13.8;ReadPosRankSum=0.962;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CTD-2124B20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489915    GT:AD:DP:GQ:PL    0/1:16,20:36:99:527,0,375
18    6837446    rs2303977    G    A    290.97    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.803;QD=15.31;ReadPosRankSum=-0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532723    GT:AD:DP:GQ:PL    0/1:7,12:19:99:321,0,204
18    6851267    rs8087719    G    A    80.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262227    GT:AD:DP:GQ:PL    0/1:2,3:5:59.31:111,0,59
18    6870524    rs62082833    T    C    504.47    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.758;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.046;QD=16.82;ReadPosRankSum=1.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262227    GT:AD:DP:GQ:PL    0/1:13,17:30:99:534,0,419
18    6889973    rs4239328    A    G    729.70    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.076;DB;DP=86;Dels=0.0;FS=7.746;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.154;QD=8.48;ReadPosRankSum=-0.061;SNPEFF_AMINO_ACID_CHANGE=P364;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_6889887_6890084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383472    GT:AD:DP:GQ:PL    0/1:55,31:86:99:760,0,1611
18    6890434    rs1116757    A    G    156.78    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.339;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=7.13;ReadPosRankSum=0.134;SNPEFF_AMINO_ACID_CHANGE=P403;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_6890429_6890542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383472    GT:AD:DP:GQ:PL    0/1:13,9:22:99:187,0,339
18    6896450    rs11081282    C    T    592.69    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.507;DB;DP=44;Dels=0.0;FS=1.501;HRun=0;HaplotypeScore=1.9829;MQ=60.0;MQ0=0;MQRankSum=-0.11;QD=13.47;ReadPosRankSum=-0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262227    GT:AD:DP:GQ:PL    0/1:24,19:44:99:623,0,788
18    6898415    rs12185460    C    T    972.85    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.487;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8801;MQ=59.36;MQ0=0;MQRankSum=-0.378;QD=13.51;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262227    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1003,0,1175
18    6912004    rs1346931    G    A    213.24    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.742;DB;DP=17;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=12.54;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314319    GT:AD:DP:GQ:PL    0/1:8,9:17:99:243,0,241
18    6912143    rs1056408    A    C    264.57    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.445;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9243;MQ=60.0;MQ0=0;MQRankSum=-1.037;QD=8.82;ReadPosRankSum=-1.207;SNPEFF_AMINO_ACID_CHANGE=Q563P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_6912059_6912414;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531294    GT:AD:DP:GQ:PL    0/1:18,12:30:99:295,0,558
18    6943264    rs2016639    G    A    1059.97    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=2.29;DB;DP=64;Dels=0.0;FS=1.009;HRun=0;HaplotypeScore=0.9578;MQ=59.64;MQ0=0;MQRankSum=0.786;QD=16.56;ReadPosRankSum=-1.675;SNPEFF_AMINO_ACID_CHANGE=D2994;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_6943179_6943401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:26,38:64:99:1090,0,684
18    6947013    rs489023    C    T    64.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.23;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:4,3:7:94.62:95,0,145
18    6956504    rs11270496    ACAGCTCCAGCTC    A    2233.20    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=6.305;DB;DP=74;FS=2.282;HRun=0;HaplotypeScore=750.4722;IndelType=D;MQ=51.39;MQ0=0;MQRankSum=-3.929;QD=30.18;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=GAGAV189V;SNPEFF_CODON_CHANGE=ggagctggagctgtg/gtg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_18_6956431_6956664;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344342    GT:AD:DP:GQ:PL    0/1:50,24:74:99:2272,0,5094
18    6980457    rs693360    T    C    503.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:537,39,0
18    6980487    rs74938552    C    T    99.29    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.653;QD=5.84;ReadPosRankSum=-1.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:11,6:17:99:129,0,372
18    6980523    rs607230    T    C    348.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.8;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.277;QD=14.51;ReadPosRankSum=-0.585;SNPEFF_AMINO_ACID_CHANGE=K2002E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_6980520_6980636;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:12,12:24:99:378,0,389
18    6982238    rs540665    T    A    73.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=18.41;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:104,0,21
18    6982443    rs538815    C    T    1414.98    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.003;DB;DP=123;Dels=0.0;FS=15.063;HRun=0;HaplotypeScore=1.3123;MQ=59.06;MQ0=0;MQRankSum=0.841;QD=11.5;ReadPosRankSum=0.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:65,56:123:99:1445,0,1835
18    6982790    rs78185564    C    A    73.88    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.78;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:1,4:5:25.76:104,0,26
18    6985506    rs616722    T    C    1371.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=24.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1405,132,0
18    6985507    rs523711    G    A    371.95    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=3.247;DB;DP=56;Dels=0.0;FS=5.726;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.494;QD=6.64;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:25,31:56:99:402,0,706
18    6985631    rs617206    C    T    701.63    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.979;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.5;MQ0=0;MQRankSum=2.21;QD=15.25;ReadPosRankSum=0.913;SNPEFF_AMINO_ACID_CHANGE=L1797;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_6985526_6985642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:22,24:46:99:732,0,681
18    6985655    rs617573    C    T    1192.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    1/1:0,35:35:93.26:1226,93,0
18    6985729    rs617659    G    C    191.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=19.14;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:4,6:10:99:221,0,137
18    6986050    rs59480422    C    A    190.94    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.071;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8275;MQ=58.78;MQ0=0;MQRankSum=0.634;QD=10.05;ReadPosRankSum=0.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:12,7:19:99:221,0,392
18    6986227    rs12607841    G    A    1205.05    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=77;Dels=0.0;FS=0.871;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=-0.255;QD=15.65;ReadPosRankSum=0.65;SNPEFF_AMINO_ACID_CHANGE=A1763V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_6986136_6986346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:36,41:77:99:1235,0,1045
18    6992509    rs7243349    C    T    1304.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1338,99,0
18    6995512    rs4798524    G    A    471.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:504,39,0
18    6999628    rs625106    T    C    110.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=11.01;ReadPosRankSum=-1.447;SNPEFF_AMINO_ACID_CHANGE=S1493;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_6999444_6999637;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:4,6:10:99:140,0,143
18    7002082    rs10163962    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
18    7008583    rs73938538    A    C    680.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.757;DB;DP=65;Dels=0.0;FS=0.947;HRun=2;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.904;QD=10.47;ReadPosRankSum=0.114;SNPEFF_AMINO_ACID_CHANGE=V1342;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_7008487_7008607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:39,26:65:99:711,0,1106
18    7011413    rs619106    G    A    323.29    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=19;Dels=0.0;FS=4.242;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.188;QD=17.02;ReadPosRankSum=0.784;SNPEFF_AMINO_ACID_CHANGE=T1191;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_7011299_7011478;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:8,11:19:99:353,0,228
18    7011490    rs61695598    A    G    243.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.84;MQ0=0;MQRankSum=-0.491;QD=12.19;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:10,10:20:99:274,0,260
18    7011959    rs496865    T    A    75.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.07;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:2,3:5:59.31:105,0,59
18    7015587    rs71892920    G    GTT    199.36    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.508;DB;DP=25;FS=0.0;HRun=16;HaplotypeScore=182.8664;IndelType=I;MQ=55.21;MQ0=0;MQRankSum=-0.031;QD=7.97;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:12,6:25:99:238,0,169
18    7017322    rs539713    A    G    415.44    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.962;DB;DP=27;Dels=0.0;FS=1.545;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.012;QD=15.39;ReadPosRankSum=-0.814;SNPEFF_AMINO_ACID_CHANGE=C921;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_7017277_7017383;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:11,16:27:99:445,0,333
18    7024345    rs548577    C    T    103.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.368;QD=12.88;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,135
18    7031986    rs113133818    T    TA    247.86    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.061;DB;DP=16;FS=4.771;HRun=9;HaplotypeScore=35.3485;IndelType=I;MQ=60.67;MQ0=0;MQRankSum=1.041;QD=15.49;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:6,10:16:85.18:287,0,85
18    7033037    rs621993    G    A    149.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=9.98;ReadPosRankSum=0.405;SNPEFF_AMINO_ACID_CHANGE=A703;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_7032983_7033094;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:8,7:15:99:180,0,226
18    7034354    rs613298    A    T    130.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=13.05;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:5,5:10:99:160,0,168
18    7034448    rs566825    G    A    222.92    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.673;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.801;QD=10.13;ReadPosRankSum=-0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:13,9:22:99:253,0,392
18    7034464    rs674733    T    A    226.78    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.356;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=8.72;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:14,12:26:99:257,0,500
18    7034508    rs566655    T    G    698.27    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=43;Dels=0.0;FS=1.345;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.984;QD=16.24;ReadPosRankSum=-0.692;SNPEFF_AMINO_ACID_CHANGE=N674T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_7034478_7034689;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:21,22:43:99:728,0,626
18    7037866    rs647595    T    C    198.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:232,21,0
18    7049294    rs34279019    G    GTTTA    355.29    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.07;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=89.6312;IndelType=I;MQ=59.94;MQ0=0;MQRankSum=-0.318;QD=15.45;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:16,6:23:99:394,0,371
18    7117623    rs334406    G    C    118.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=10.79;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:5,6:11:99:149,0,151
18    7117782    rs334407    A    G    41.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.0;QD=8.25;ReadPosRankSum=-1.026;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_7117659_7117813;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389658    GT:AD:DP:GQ:PL    0/1:2,3:5:54.68:71,0,55
18    7567803    rs67536179    C    G    234.15    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.24;MQ0=0;MQRankSum=0.1;QD=7.1;ReadPosRankSum=-1.661;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:20,13:33:99:264,0,590
18    7774104    rs875530    T    C    378.56    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=36;Dels=0.0;FS=3.658;HRun=1;HaplotypeScore=0.8667;MQ=59.36;MQ0=0;MQRankSum=0.243;QD=10.52;ReadPosRankSum=-0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:22,14:36:99:409,0,641
18    7926404    rs7240783    A    T    133.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=13.39;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:4,6:10:99:164,0,130
18    8069868    rs2230601    C    T    634.03    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=40;Dels=0.0;FS=4.617;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.711;QD=15.85;ReadPosRankSum=-0.219;SNPEFF_AMINO_ACID_CHANGE=N226;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_8069684_8069992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444013    GT:AD:DP:GQ:PL    0/1:17,23:40:99:664,0,547
18    8088597    rs491890    A    G    69.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=9.91;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,150
18    8088969    rs488952    G    C    72.81    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=9.1;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:5,3:8:99:103,0,188
18    8114774    rs147362909    C    T    429.52    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.655;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=15.91;ReadPosRankSum=1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:13,14:27:99:460,0,434
18    8227081    rs79292846    T    C    1087.33    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=60;Dels=0.0;FS=1.651;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;MQRankSum=0.15;QD=18.12;ReadPosRankSum=0.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:25,35:60:99:1117,0,809
18    8244282    rs111293484    C    CA    161.91    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.299;DB;DP=20;FS=3.274;HRun=13;HaplotypeScore=104.0257;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.241;QD=8.1;ReadPosRankSum=0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:11,9:20:99:201,0,100
18    8244335    rs12962826    G    A    107.12    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.9;ReadPosRankSum=-1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,148
18    8248041    rs12964764    G    T    1051.86    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=5.543;DB;DP=58;Dels=0.0;FS=5.121;HRun=3;HaplotypeScore=2.5439;MQ=60.0;MQ0=0;MQRankSum=-0.508;QD=18.14;ReadPosRankSum=0.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:26,32:58:99:1082,0,760
18    8343333    rs2246146    G    A    165.33    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.395;QD=9.73;ReadPosRankSum=-1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:9,8:17:99:195,0,311
18    8343530    rs2279074    G    A    633.14    PASS    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=0.595;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9849;MQ=60.0;MQ0=0;MQRankSum=-0.754;QD=18.62;ReadPosRankSum=0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:11,23:34:99:663,0,344
18    8379089    rs8082894    T    A    217.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.337;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;MQRankSum=-2.454;QD=12.07;ReadPosRankSum=0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:9,9:18:99:247,0,301
18    8379095    rs3819095    G    C    671.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.53;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:705,54,0
18    8380473    rs657374    T    A    886.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:919,69,0
18    8384848    rs586931    A    C    148.41    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=16.49;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    0/1:4,5:9:99:178,0,100
18    8387058    rs664201    T    G    1103.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    1/1:0,35:35:87.27:1137,87,0
18    8387065    rs594742    C    T    1182.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332175    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1216,90,0
18    8387195    rs593978    G    A    886.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=36.95;SNPEFF_AMINO_ACID_CHANGE=E1164;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_8387070_8387233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444013    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:920,69,0
18    8387219    rs593950    G    C    373.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=21.97;SNPEFF_AMINO_ACID_CHANGE=T1172;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_8387070_8387233;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444013    GT:AD:DP:GQ:PL    1/1:0,17:17:36.09:407,36,0
18    8784370    rs918272    A    G    1285.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=26.23;SNPEFF_AMINO_ACID_CHANGE=E420;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_8783528_8784841;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359865    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1318,114,0
18    8784612    rs1965665    A    G    1602.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.412;MQ=59.53;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=Q501R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_8783528_8784841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359865    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1636,132,0
18    8793236    rs556991    T    C    767.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    1/1:0,26:26:69.19:800,69,0
18    8796050    rs1979945    A    G    154.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:187,15,0
18    8797912    rs574163    G    C    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
18    8798374    rs606431    G    A    169.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
18    8821301    rs656602    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520926    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
18    8821556    rs629142    G    T    551.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520926    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:585,45,0
18    8824519    rs585117    A    G    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
18    8824590    rs610915    C    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:123,9,0
18    8825192    rs581894    A    G    940.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=34.85;SNPEFF_AMINO_ACID_CHANGE=G1187;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_8824697_8826230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400050    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:974,78,0
18    8826083    rs3744977    G    C    270.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=T1484;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_8824697_8826230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400050    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:303,24,0
18    8828952    rs2242273    C    T    392.07    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.727;DB;DP=33;Dels=0.0;FS=3.304;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.269;QD=11.88;ReadPosRankSum=2.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    0/1:19,14:33:99:422,0,582
18    8829035    rs2170297    G    A    146.26    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.166;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=8.6;ReadPosRankSum=0.955;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    0/1:11,6:17:99:176,0,406
18    8829075    rs612721    C    T    187.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.71;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306285    GT:AD:DP:GQ:PL    0/1:4,6:10:99:217,0,108
18    8831615    rs11665124    G    A    891.70    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.835;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.6;MQ0=0;MQRankSum=-2.837;QD=15.37;ReadPosRankSum=-1.029;SNPEFF_AMINO_ACID_CHANGE=C1599Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_8831605_8832776;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306329    GT:AD:DP:GQ:PL    0/1:27,31:58:99:922,0,819
18    8832073    rs3186500    G    C    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518815    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
18    9105108    rs1396740    C    T    794.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497577    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:828,63,0
18    9117867    rs906807    T    C    3122.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_AMINO_ACID_CHANGE=V29A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_9117836_9117901;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318388    GT:AD:DP:GQ:PL    1/1:0,90:90:99:3156,229,0
18    9119156    rs874250    T    C    176.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318388    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
18    9119489    rs41274300    A    T    965.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.75;DB;DP=70;Dels=0.0;FS=2.05;HRun=1;HaplotypeScore=0.9789;MQ=53.44;MQ0=0;MQRankSum=0.162;QD=13.8;ReadPosRankSum=-0.51;SNPEFF_AMINO_ACID_CHANGE=V67;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_9119472_9119588;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318388    GT:AD:DP:GQ:PL    0/1:35,35:70:99:996,0,1037
18    9124799    rs35039643    CT    C    37.71    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.408;DB;DP=12;FS=0.0;HRun=14;HaplotypeScore=52.718;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=0.143;QD=3.14;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318388    GT:AD:DP:GQ:PL    0/1:6,5:12:76.73:77,0,107
18    9134354    rs12454908    C    G    408.64    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.897;QD=16.35;ReadPosRankSum=0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318388    GT:AD:DP:GQ:PL    0/1:12,13:25:99:439,0,386
18    9182329    .    T    TA    154.44    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=2;HaplotypeScore=94.5253;IndelType=I;MQ=29.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262126    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
18    9182332    rs60039834    C    CTTCAGGTAGGTT    1287.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=72.1912;IndelType=I;MQ=29.0;MQ0=0;QD=160.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262126    GT:AD:DP:GQ:PL    1/1:3,5:8:24.08:1329,24,0
18    9208546    rs71362073    T    C    39.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262126    GT:AD:DP:GQ:PL    0/1:2,2:4:59.29:70,0,59
18    9255982    rs4798791    A    G    535.89    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=38;Dels=0.0;FS=2.961;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.85;QD=14.1;ReadPosRankSum=-0.411;SNPEFF_AMINO_ACID_CHANGE=K883R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_9254209_9258929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383440    GT:AD:DP:GQ:PL    0/1:17,21:38:99:566,0,499
18    9337456    rs3975825    G    GTATT    331.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=33.183;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=33.13;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TWSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262120    GT:AD:DP:GQ:PL    0/1:5,5:10:99:370,0,250
18    9396597    rs2298550    A    G    336.66    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.73;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=9.9;ReadPosRankSum=1.254;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TWSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262120    GT:AD:DP:GQ:PL    0/1:21,12:34:99:367,0,739
18    9512985    rs1813100    G    A    588.51    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=44;Dels=0.0;FS=14.703;HRun=0;HaplotypeScore=3.7717;MQ=59.48;MQ0=0;MQRankSum=1.48;QD=13.38;ReadPosRankSum=-0.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019317    GT:AD:DP:GQ:PL    0/1:23,21:44:99:619,0,665
18    9522606    rs329007    G    A    110.24    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.75;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000019317    GT:AD:DP:GQ:PL    0/1:3,4:7:98.69:140,0,99
18    9549149    rs58982927    C    G    792.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=66;Dels=0.0;FS=2.424;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=1.079;QD=12.01;ReadPosRankSum=-0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400555    GT:AD:DP:GQ:PL    0/1:33,33:66:99:822,0,1079
18    9559220    rs62087427    A    G    99.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.633;QD=9.94;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285124    GT:AD:DP:GQ:PL    0/1:4,6:10:99:129,0,137
18    9576900    rs76696293    TTAAAG    T    540.97    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=82.4818;IndelType=D;MQ=48.77;MQ0=0;MQRankSum=-0.778;QD=38.64;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285124    GT:AD:DP:GQ:PL    0/1:4,10:14:99:580,0,327
18    9577352    rs329000    C    T    134.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285124    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
18    9588016    rs11081485    C    T    183.01    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=22.88;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285124    GT:AD:DP:GQ:PL    0/1:2,6:8:58.91:213,0,59
18    9594877    rs1275666    G    A    108.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.52;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP4R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285124    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,143
18    9708582    rs62078920    C    T    211.44    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.437;DB;DP=13;Dels=0.0;FS=14.968;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=16.26;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306096    GT:AD:DP:GQ:PL    0/1:5,8:13:99:241,0,158
18    9775372    rs6506697    A    G    2562.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.382;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9846;MQ=60.0;MQ0=0;MQRankSum=-1.732;QD=32.03;ReadPosRankSum=0.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306096    GT:AD:DP:GQ:PL    1/1:2,77:80:99:2596,160,0
18    9775411    rs6506698    A    G    1678.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.774;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=34.96;ReadPosRankSum=-1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306096    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1711,100,0
18    9775547    rs11369597    A    AT    118.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=10;HaplotypeScore=24.4497;IndelType=I;MQ=60.0;MQ0=0;QD=19.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306096    GT:AD:DP:GQ:PL    1/1:1,5:6:15.04:160,15,0
18    9775566    rs6506699    G    A    81.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306096    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
18    9859134    rs10695443    A    AAATATT    1019.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.849;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=99.7005;IndelType=I;MQ=46.34;MQ0=0;MQRankSum=-3.014;QD=50.98;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306096    GT:AD:DP:GQ:PL    0/1:10,8:20:99:1059,0,481
18    9886288    rs11662060    G    A    623.01    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.068;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.122;QD=15.58;ReadPosRankSum=1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306084    GT:AD:DP:GQ:PL    0/1:18,22:40:99:653,0,583
18    9886988    rs34812912    C    T    2852.37    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.452;DB;DP=215;Dels=0.0;FS=0.507;HRun=0;HaplotypeScore=3.4388;MQ=59.25;MQ0=0;MQRankSum=-0.18;QD=13.27;ReadPosRankSum=1.428;SNPEFF_AMINO_ACID_CHANGE=P104L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_9886586_9888156;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357775    GT:AD:DP:GQ:PL    0/1:114,100:215:99:2882,0,3602
18    9887149    rs11662946    G    C    3033.32    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=3.595;DB;DP=228;Dels=0.0;FS=1.64;HRun=2;HaplotypeScore=1.367;MQ=59.39;MQ0=0;MQRankSum=1.545;QD=13.3;ReadPosRankSum=0.672;SNPEFF_AMINO_ACID_CHANGE=A158P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_9886586_9888156;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357775    GT:AD:DP:GQ:PL    0/1:118,110:228:99:3063,0,3597
18    9887497    rs11081510    G    A    6453.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DB;DP=189;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.905;MQ=59.16;MQ0=0;MQRankSum=0.824;QD=34.15;ReadPosRankSum=0.75;SNPEFF_AMINO_ACID_CHANGE=E139K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_9887432_9888377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536353    GT:AD:DP:GQ:PL    1/1:1,188:189:99:6454,473,0
18    9887857    rs17732496    G    A    450.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.53;MQ0=0;MQRankSum=0.207;QD=11.27;ReadPosRankSum=-1.394;SNPEFF_AMINO_ACID_CHANGE=A259T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_9887432_9888377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536353    GT:AD:DP:GQ:PL    0/1:24,16:40:99:481,0,773
18    9888027    rs11664080    C    T    374.88    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=29;Dels=0.0;FS=3.315;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.022;QD=12.93;ReadPosRankSum=0.982;SNPEFF_AMINO_ACID_CHANGE=C315;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_9887432_9888377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536353    GT:AD:DP:GQ:PL    0/1:15,14:29:99:405,0,498
18    9954233    rs151289099    C    CT    733.96    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=105;FS=1.105;HRun=13;HaplotypeScore=495.8515;IndelType=I;MQ=57.8;MQ0=0;MQRankSum=-0.879;QD=6.99;ReadPosRankSum=0.653;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340541    GT:AD:DP:GQ:PL    0/1:62,38:105:99:773,0,486
18    10485357    rs489837    T    C    74.37    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.965;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.053;QD=4.13;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355285    GT:AD:DP:GQ:PL    0/1:14,4:18:99:104,0,513
18    10485363    rs91958    T    C    94.94    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.619;QD=4.75;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355285    GT:AD:DP:GQ:PL    0/1:14,6:20:99:125,0,504
18    10485369    rs91959    G    A    171.02    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.936;QD=7.44;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355285    GT:AD:DP:GQ:PL    0/1:15,8:23:99:201,0,524
18    10487353    rs580258    A    G    31.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=15.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355285    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
18    10487918    rs3185480    C    T    378.74    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.174;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3548;MQ=59.42;MQ0=0;MQRankSum=0.176;QD=9.47;ReadPosRankSum=-1.497;SNPEFF_AMINO_ACID_CHANGE=L476;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_10487587_10488698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355285    GT:AD:DP:GQ:PL    0/1:22,18:40:99:409,0,579
18    10488091    rs1045584    G    T    93.31    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=8.48;ReadPosRankSum=1.133;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355285    GT:AD:DP:GQ:PL    0/1:7,4:11:99:123,0,215
18    10526187    rs2290279    A    G    577.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:610,45,0
18    10530664    rs57907292    CTT    C    59.11    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=13;FS=0.0;HRun=17;HaplotypeScore=168.593;IndelType=D;MQ=52.33;MQ0=0;MQRankSum=0.633;QD=4.55;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    0/1:3,6:13:33.17:98,0,33
18    10530928    rs509370    T    C    330.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:363,27,0
18    10532897    rs652521    T    C    280.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
18    10532939    rs641723    A    G    92.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
18    10533370    rs76744207    T    C    72.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    1/1:0,3:3:9:104,9,0
18    10539739    rs640832    A    G    4812    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.66;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4812,349,0
18    10540432    rs510110    A    C    1859.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.66;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1892,147,0
18    10548795    rs73942693    T    C    502.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.704;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.317;QD=20.94;ReadPosRankSum=0.153;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    0/1:8,16:24:99:533,0,258
18    10549362    rs617040    C    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322897    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
18    10677992    rs600433    G    T    168.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
18    10680024    rs486001    C    A    80.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
18    10680104    rs1944383    C    T    452.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:486,39,0
18    10680132    rs688237    C    T    495.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:529,42,0
18    10680142    rs688222    T    A    615.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=32.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:648,48,0
18    10680163    rs487037    G    A    611.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=26.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:645,54,0
18    10689479    rs7235212    C    T    301.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:334,24,0
18    10689980    rs2277861    C    A    86.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
18    10691109    rs8091383    C    T    1067.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=36.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1101,81,0
18    10691192    rs3748423    T    G    2210.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.67;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2244,166,0
18    10691216    rs3748422    G    A    2471.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2505,184,0
18    10691357    rs3748421    G    A    1268.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=A147;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_10691223_10691381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:1,39:40:96.29:1301,96,0
18    10696043    rs11661737    T    C    2004.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=36.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2037,150,0
18    10696227    rs2277860    C    T    1738.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=P189;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_10696072_10696286;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000503781    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1772,135,0
18    10696333    rs868525    C    G    1242.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,34:34:96.31:1276,96,0
18    10696337    rs868526    A    G    1202.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285141    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1235,99,0
18    10697851    .    T    A    483.80    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DP=32;Dels=0.0;FS=3.291;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.057;QD=15.12;ReadPosRankSum=0.604;SNPEFF_AMINO_ACID_CHANGE=Q2128L;SNPEFF_CODON_CHANGE=cAa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_10697746_10697878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    0/1:15,17:32:99:514,0,494
18    10757868    rs7242408    A    G    1053.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,34:34:93.25:1087,93,0
18    10758023    rs7407105    G    A    3833.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5149;MQ=59.46;MQ0=0;QD=31.68;SNPEFF_AMINO_ACID_CHANGE=N1264;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_10757967_10758132;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,120:121:99:3834,295,0
18    10758384    rs7228152    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
18    10759935    rs2865119    A    G    865.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,30:30:78.21:898,78,0
18    10759961    rs2865118    G    A    643.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:676,54,0
18    10762275    rs4519388    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
18    10762418    rs8095476    G    A    384.38    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-1.557;QD=13.25;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    0/1:16,13:29:99:414,0,503
18    10762962    rs7241380    G    A    2868.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=36.77;SNPEFF_AMINO_ACID_CHANGE=L1002;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_10762920_10763096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2901,220,0
18    10763007    rs7227167    T    C    1991.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.74;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=T275;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_10762920_10763096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383408    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2024,165,0
18    10763218    rs2865131    T    C    123.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
18    10773159    rs7232320    A    G    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
18    10773177    rs7232335    A    T    82.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
18    10784733    rs3830641    GA    G    2369.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=2;HaplotypeScore=183.4475;IndelType=D;MQ=61.25;MQ0=0;QD=40.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2411,175,0
18    10785070    rs12604151    A    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
18    10787047    rs6505592    G    A    4080.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.85;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=L32;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_10787034_10787140;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383408    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4081,295,0
18    10787199    rs11468237    GAA    G    598.62    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=4.928;DB;DP=77;FS=10.474;HRun=11;HaplotypeScore=285.934;IndelType=D;MQ=59.3;MQ0=1;MQRankSum=0.485;QD=7.67;ReadPosRankSum=2.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    0/1:51,27:77:99:638,0,1550
18    10795051    rs7236574    C    A    275.51    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DB;DP=16;Dels=0.0;FS=6.166;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.184;QD=17.22;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    0/1:6,10:16:99:306,0,111
18    10795057    rs7236576    C    G    279.28    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=16;Dels=0.0;FS=6.166;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.286;QD=17.45;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    0/1:6,10:16:99:309,0,106
18    10797362    rs7407224    T    G    59.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=9.98;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    0/1:3,3:6:89.87:90,0,104
18    10797828    rs8086662    T    C    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
18    10806867    rs6505599    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM38B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302079    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
18    11609645    rs77993106    G    A    450.57    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4281;MQ=46.98;MQ0=1;MQRankSum=0.166;QD=10.99;ReadPosRankSum=0.497;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:19,22:41:99:481,0,250
18    11609682    rs117670705    C    T    597.80    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=43;Dels=0.0;FS=1.183;HRun=0;HaplotypeScore=0.0;MQ=48.83;MQ0=0;MQRankSum=-1.487;QD=13.9;ReadPosRankSum=-1.207;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:19,24:43:99:628,0,514
18    11609754    rs74496495    G    A    1343.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.65;MQ0=1;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=V15M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1376,108,0
18    11609863    rs112705545    G    A    868.06    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=3.847;DB;DP=94;Dels=0.0;FS=3.031;HRun=0;HaplotypeScore=0.734;MQ=40.55;MQ0=2;MQRankSum=-1.252;QD=9.23;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=R51H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:53,40:94:99:898,0,1300
18    11609903    rs8087561    C    G    1520.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.47;MQ0=2;QD=17.09;SNPEFF_AMINO_ACID_CHANGE=R64;SNPEFF_CODON_CHANGE=cgC/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    1/1:0,88:89:99:1554,171,0
18    11609904    rs8087447    A    G    1565.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.71;MQ0=2;QD=17.4;SNPEFF_AMINO_ACID_CHANGE=T65A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    1/1:0,90:90:99:1599,174,0
18    11610012    rs115874921    G    A    1961.43    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=4.523;DB;DP=101;Dels=0.0;FS=0.789;HRun=0;HaplotypeScore=1.8237;MQ=55.13;MQ0=0;MQRankSum=0.973;QD=19.42;ReadPosRankSum=0.548;SNPEFF_AMINO_ACID_CHANGE=V101I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:39,62:101:99:1991,0,1052
18    11610052    rs74410464    T    C    1108.42    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=2.136;DB;DP=111;Dels=0.0;FS=3.845;HRun=0;HaplotypeScore=1.7878;MQ=54.57;MQ0=0;MQRankSum=1.204;QD=9.99;ReadPosRankSum=-0.647;SNPEFF_AMINO_ACID_CHANGE=V114A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:69,42:111:99:1138,0,2292
18    11610073    rs75301503    G    A    1160.67    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=126;Dels=0.0;FS=6.035;HRun=0;HaplotypeScore=1.6649;MQ=53.57;MQ0=0;MQRankSum=-0.443;QD=9.21;ReadPosRankSum=0.169;SNPEFF_AMINO_ACID_CHANGE=C121Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:77,49:126:99:1191,0,2304
18    11610163    rs62084100    G    C    2758.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=45.77;MQ0=0;QD=27.87;SNPEFF_AMINO_ACID_CHANGE=G151A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    1/1:0,99:99:99:2792,232,0
18    11610321    .    T    A    112.44    MQFilter40    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.708;DP=46;Dels=0.0;FS=15.657;HRun=0;HaplotypeScore=0.0;MQ=29.96;MQ0=7;MQRankSum=-1.236;QD=2.44;ReadPosRankSum=-0.24;SNPEFF_AMINO_ACID_CHANGE=S204T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:32,14:46:99:142,0,696
18    11610349    rs62084102    G    A    481.03    MQFilter40    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=41;Dels=0.0;FS=16.443;HRun=1;HaplotypeScore=0.0;MQ=25.42;MQ0=9;MQRankSum=0.979;QD=11.73;ReadPosRankSum=1.458;SNPEFF_AMINO_ACID_CHANGE=S213N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:15,26:41:99:511,0,152
18    11610382    .    C    A    321.72    MQFilter40    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DP=37;Dels=0.0;FS=5.842;HRun=1;HaplotypeScore=0.0;MQ=23.05;MQ0=7;MQRankSum=0.317;QD=8.7;ReadPosRankSum=-0.317;SNPEFF_AMINO_ACID_CHANGE=T224N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:12,25:37:86.87:352,0,87
18    11610443    .    T    C    42.01    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.239;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.77;MQ0=4;MQRankSum=-0.118;QD=2.8;ReadPosRankSum=-0.354;SNPEFF_AMINO_ACID_CHANGE=C244;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    1/1:4,11:15:8.98:74,9,0
18    11610508    .    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.5;MQ0=5;QD=5.09;SNPEFF_AMINO_ACID_CHANGE=V266A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    1/1:1,6:7:6.02:67,6,0
18    11610570    .    C    T    167.73    MQFilter40    AC=2;AF=1.00;AN=2;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.7;MQ0=6;QD=12.9;SNPEFF_AMINO_ACID_CHANGE=R287W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    1/1:4,9:13:18.05:201,18,0
18    11610580    .    T    G    119.19    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.7;MQ0=6;MQRankSum=-0.742;QD=9.17;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=I290S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11609712_11610607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:6,7:13:15.38:149,0,15
18    11610728    .    G    A    165.87    MQFilter40    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.51;MQ0=1;MQRankSum=1.179;QD=16.59;ReadPosRankSum=-1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:3,7:10:6.61:195,0,7
18    11610732    .    T    C    122.99    MQFilter40    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.51;MQ0=1;MQRankSum=1.179;QD=12.3;ReadPosRankSum=-1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35G4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424015    GT:AD:DP:GQ:PL    0/1:3,7:10:9.62:153,0,10
18    11619552    rs67129808    C    T    783.15    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.471;DB;DP=86;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=10.1244;MQ=52.32;MQ0=1;MQRankSum=-2.534;QD=9.11;ReadPosRankSum=-1.691;SNPEFF_AMINO_ACID_CHANGE=E337K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11619508_11619918;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:52,34:86:99:813,0,1474
18    11619799    rs112261054    ATGT    A    2243.80    PASS    AB=0.777;AC=1;AF=0.50;AN=2;BaseQRankSum=8.903;DB;DP=152;FS=5.578;HRun=0;HaplotypeScore=575.7428;IndelType=D;MQ=33.85;MQ0=27;MQRankSum=-3.874;QD=11.28;ReadPosRankSum=-0.239;SNPEFF_AMINO_ACID_CHANGE=QH253H;SNPEFF_CODON_CHANGE=caacat/cat;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_18_11619508_11619918;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:142,57:152:99:2283,0,4736
18    11619908    rs62099569    A    G    251.41    MQFilter40;QDFilter2    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=1.09;DB;DP=133;Dels=0.0;FS=45.37;HRun=0;HaplotypeScore=0.734;MQ=37.88;MQ0=5;MQRankSum=-3.812;QD=1.89;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=V218A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11619508_11619918;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:105,27:133:99:281,0,2887
18    11621028    rs62099570    T    C    168.02    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.831;DB;DP=44;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=1.9632;MQ=42.58;MQ0=1;MQRankSum=-3.942;QD=3.82;ReadPosRankSum=0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:28,16:44:99:198,0,793
18    11621447    rs2126778    A    G    1028.88    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.986;DB;DP=174;DS;Dels=0.0;FS=46.52;HRun=0;HaplotypeScore=2.6594;MQ=45.66;MQ0=10;MQRankSum=-9.125;QD=5.91;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=W192R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11621415_11621475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:100,74:174:99:1059,0,3152
18    11621458    rs2126779    A    G    764.61    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.187;DB;DP=161;Dels=0.0;FS=59.166;HRun=0;HaplotypeScore=2.7387;MQ=45.29;MQ0=10;MQRankSum=-9.927;QD=4.75;ReadPosRankSum=-0.183;SNPEFF_AMINO_ACID_CHANGE=V188A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11621415_11621475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:99,62:161:99:795,0,2936
18    11621665    rs62099571    G    C    204.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.02;MQ0=0;QD=22.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:238,21,0
18    11625886    rs16973024    T    C    4762.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=202;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9033;MQ=40.58;MQ0=6;QD=23.58;SNPEFF_AMINO_ACID_CHANGE=K116E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11625883_11625982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    1/1:0,202:202:99:4763,391,0
18    11626108    rs139375306    G    C    270.68    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.408;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.44;MQ0=0;MQRankSum=-0.789;QD=10.83;ReadPosRankSum=-1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:12,13:25:99:301,0,412
18    11633927    rs1815802    A    G    2508.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.1;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2541,199,0
18    11639246    rs115877816    T    C    213.74    MQFilter40    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.711;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.11;MQ0=2;MQRankSum=-3.204;QD=9.29;ReadPosRankSum=0.458;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:10,13:23:99:244,0,319
18    11639356    rs3928536    G    C    1322.10    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.793;DB;DP=77;Dels=0.0;FS=3.249;HRun=1;HaplotypeScore=1.4538;MQ=55.7;MQ0=0;MQRankSum=1.289;QD=17.17;ReadPosRankSum=-0.3;SNPEFF_AMINO_ACID_CHANGE=C35W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11639341_11639498;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:32,44:77:99:1352,0,943
18    11644274    rs75550061    CAGGG    C    850.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=105.3123;IndelType=D;MQ=49.27;MQ0=0;QD=44.77;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    1/1:1,18:19:54.18:893,54,0
18    11644433    rs56215832    G    C    322.71    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=51;Dels=0.0;FS=19.346;HRun=0;HaplotypeScore=2.6907;MQ=32.31;MQ0=7;MQRankSum=-3.497;QD=6.33;ReadPosRankSum=-0.453;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:25,25:51:99:353,0,622
18    11644454    rs112976936    T    A    375.54    MQFilter40    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.782;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1992;MQ=30.85;MQ0=7;MQRankSum=3.443;QD=6.26;ReadPosRankSum=0.906;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:42,16:60:99:406,0,770
18    11644536    rs62098134    A    T    359.48    MQFilter40    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=87;Dels=0.0;FS=46.253;HRun=0;HaplotypeScore=0.0;MQ=27.46;MQ0=5;MQRankSum=-0.079;QD=4.13;ReadPosRankSum=0.824;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:60,27:87:99:389,0,1123
18    11644564    rs112877621    G    A    359.10    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=1.486;DB;DP=77;Dels=0.0;FS=22.349;HRun=1;HaplotypeScore=0.8321;MQ=24.63;MQ0=10;MQRankSum=-0.02;QD=4.66;ReadPosRankSum=0.971;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:47,30:77:99:389,0,920
18    11644597    rs143093020    C    A    120.77    MQFilter40;QDFilter2    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.385;DB;DP=77;Dels=0.0;FS=13.898;HRun=1;HaplotypeScore=0.9469;MQ=22.38;MQ0=14;MQRankSum=-1.385;QD=1.57;ReadPosRankSum=0.369;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-677O4.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547442    GT:AD:DP:GQ:PL    0/1:53,24:77:99:151,0,822
18    11644746    .    G    A    425.85    MQFilter40    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=24.58;MQ0=19;MQRankSum=2.612;QD=6.76;ReadPosRankSum=-0.498;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:41,22:63:99:456,0,377
18    11753484    rs151333049    T    C    104.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=13.06;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269162    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,138
18    11824772    rs1647554    C    G    93.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=13.35;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269162    GT:AD:DP:GQ:PL    0/1:3,4:7:99:123,0,107
18    11824829    rs1647555    A    G    433.91    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.352;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.15;MQ0=0;MQRankSum=-0.282;QD=19.72;ReadPosRankSum=1.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269162    GT:AD:DP:GQ:PL    0/1:7,15:22:99:464,0,206
18    11824886    rs1647557    T    G    300.65    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.638;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=59.45;MQ0=0;MQRankSum=-0.983;QD=8.84;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269162    GT:AD:DP:GQ:PL    0/1:18,16:34:99:331,0,526
18    11864707    rs4315401    A    G    679.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269162    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:712,54,0
18    11884670    rs643652    C    G    376.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=2.729;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.91;QD=23.55;ReadPosRankSum=1.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269162    GT:AD:DP:GQ:PL    0/1:4,12:16:95.72:407,0,96
18    11886563    rs662515    C    G    334.06    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=1.28;DB;DP=35;Dels=0.0;FS=1.501;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.871;QD=9.54;ReadPosRankSum=-1.041;SNPEFF_AMINO_ACID_CHANGE=A171P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_11886498_11886620;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317251    GT:AD:DP:GQ:PL    0/1:22,13:35:99:364,0,698
18    11888573    rs59202037    G    A    159.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334049    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:192,15,0
18    11893317    rs6650615    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309976    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,73
18    11893391    rs673735    C    T    363.29    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.849;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.457;QD=24.22;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309976    GT:AD:DP:GQ:PL    0/1:4,11:15:99:393,0,122
18    11913775    rs4347692    T    C    57.95    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=51.91;MQ0=2;MQRankSum=-0.573;QD=5.27;ReadPosRankSum=-0.248;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309976    GT:AD:DP:GQ:PL    0/1:6,5:11:87.95:88,0,154
18    11999038    rs45442994    G    A    729.96    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=3.967;DB;DP=42;Dels=0.0;FS=1.639;HRun=0;HaplotypeScore=0.5784;MQ=58.89;MQ0=0;MQRankSum=-0.726;QD=17.38;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269159    GT:AD:DP:GQ:PL    0/1:15,27:42:99:760,0,379
18    11999326    rs41491746    G    A    212.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=15.21;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269159    GT:AD:DP:GQ:PL    0/1:7,7:14:99:243,0,240
18    12012457    rs635370    A    C    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269159    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
18    12014411    rs643107    T    G    159.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269159    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:193,15,0
18    12028247    rs612599    A    G    232.78    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5493;MQ=57.66;MQ0=0;MQRankSum=0.898;QD=23.28;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269159    GT:AD:DP:GQ:PL    0/1:2,8:10:55.37:263,0,55
18    12057117    rs9959561    C    T    237.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP002414.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391405    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:271,21,0
18    12057195    rs9959517    A    G    323.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP002414.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391405    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:356,27,0
18    12057389    rs9959781    C    G    439.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_AMINO_ACID_CHANGE=A117;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12056672_12057814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP002414.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391405    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:472,36,0
18    12057403    rs9959774    A    G    482.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_AMINO_ACID_CHANGE=W113R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12056672_12057814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP002414.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391405    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:516,42,0
18    12057809    rs9960429    G    C    221.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.63;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_12056672_12057814;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP002414.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391405    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:254,21,0
18    12076365    rs12458258    C    A    534.31    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.057;DB;DP=39;Dels=0.0;FS=3.227;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.986;QD=13.7;ReadPosRankSum=1.395;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AP002414.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540614    GT:AD:DP:GQ:PL    0/1:21,18:39:99:564,0,628
18    12076440    rs35530473    G    A    140.31    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=2.181;QD=12.76;ReadPosRankSum=-1.186;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AP002414.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540614    GT:AD:DP:GQ:PL    0/1:5,6:11:99:170,0,172
18    12076504    rs12966109    A    C    197.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.83;MQ0=0;QD=28.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AP002414.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540614    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:231,18,0
18    12094006    rs9964971    C    T    247.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:280,21,0
18    12095950    rs1986750    G    A    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
18    12096249    rs1986751    G    T    2383.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.28;MQ0=0;QD=37.24;SNPEFF_AMINO_ACID_CHANGE=A174S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12096195_12096301;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,63:64:99:2416,187,0
18    12097547    rs4796945    A    G    794.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=59.03;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:828,63,0
18    12098063    rs7227838    C    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
18    12099654    rs6505715    T    C    1036.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=C251R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12099614_12099681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1070,81,0
18    12104638    rs11875591    C    T    117.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.66;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    0/1:2,4:6:47.85:148,0,48
18    12115002    rs9959641    A    G    826.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:860,66,0
18    12115310    rs8091585    C    T    464.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:498,36,0
18    12115339    rs8091463    A    G    363.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:397,30,0
18    12115509    rs4519391    G    A    2687.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=59.5;MQ0=0;QD=32.0;SNPEFF_AMINO_ACID_CHANGE=E128K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12115392_12115533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418274    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2721,199,0
18    12124152    rs11873244    C    G    422.64    MQFilter40    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.416;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.79;MQ0=0;MQRankSum=1.318;QD=12.08;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=Q213E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12124136_12124319;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418274    GT:AD:DP:GQ:PL    0/1:16,19:35:99:453,0,331
18    12126407    rs9303759    T    A    1355.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.24;MQ0=0;QD=36.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314074    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1389,108,0
18    12264512    rs6505738    T    C    378.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=23.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIDEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320477    GT:AD:DP:GQ:PL    1/1:0,16:16:39.06:411,39,0
18    12273977    rs12966610    G    A    98.96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.0;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIDEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320477    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,156
18    12274104    rs45619832    G    T    438.46    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.95;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.183;QD=12.18;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=V115F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12274092_12274273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIDEA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320477    GT:AD:DP:GQ:PL    0/1:21,15:36:99:468,0,559
18    12274371    rs45493902    G    T    110.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=15.73;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIDEA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320477    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,106
18    12308243    rs8087840    T    A    106.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445717    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:139,12,0
18    12308245    rs8086821    C    T    107.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445717    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:140,12,0
18    12308377    rs8086993    C    A    154.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=25.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317702    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:187,15,0
18    12308504    rs8087496    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317702    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
18    12337688    rs78550590    G    C    33.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=5.53;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFG3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269143    GT:AD:DP:GQ:PL    0/1:3,3:6:63.16:63,0,111
18    12343871    rs4797677    A    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFG3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269143    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
18    12348285    rs11553521    T    C    1204.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=E550;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12348272_12348382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFG3L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269143    GT:AD:DP:GQ:PL    1/1:0,38:38:90.27:1237,90,0
18    12351342    rs11080572    C    T    1483.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=L463;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12351305_12351412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFG3L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269143    GT:AD:DP:GQ:PL    1/1:0,45:46:99:1517,114,0
18    12358997    rs7407640    A    G    179.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFG3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269143    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:212,15,0
18    12359920    rs8097342    G    A    1893.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFG3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269143    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1927,144,0
18    12363950    rs2298542    C    T    586.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFG3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269143    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:620,48,0
18    12421442    rs66495781    T    A    409.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336990    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:443,33,0
18    12429313    rs3760550    C    T    301.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLMO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336990    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:335,27,0
18    12450033    rs140301986    TA    T    172.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=16.8943;IndelType=D;MQ=56.62;MQ0=0;QD=24.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383356    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:214,21,0
18    12453005    rs499013    A    G    1039.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309836    GT:AD:DP:GQ:PL    1/1:0,28:28:81.24:1073,81,0
18    12512255    rs2051257    T    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309836    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:75,0,33
18    12512385    rs113944653    CAA    C    180.42    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.55;DB;DP=23;FS=0.0;HRun=15;HaplotypeScore=156.4307;IndelType=D;MQ=58.93;MQ0=0;MQRankSum=-0.495;QD=7.84;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309836    GT:AD:DP:GQ:PL    0/1:3,10:23:56.92:219,0,57
18    12512559    rs550613    C    A    669.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309836    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:702,54,0
18    12512574    rs567709    T    C    593.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309836    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:626,48,0
18    12546608    rs35057526    GA    G    1064.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=8;HaplotypeScore=111.3726;IndelType=D;MQ=62.75;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309836    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1107,117,0
18    12634986    rs12454931    T    G    1517.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.87;MQ0=0;QD=37.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309836    GT:AD:DP:GQ:PL    1/1:1,40:41:99:1550,117,0
18    12658600    rs1062235    A    G    63.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=10.66;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=E18;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12658550_12658712;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP005482.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400512    GT:AD:DP:GQ:PL    0/1:3,3:6:93.96:94,0,108
18    12673721    rs45589535    A    G    76.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.14;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262127    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:107,0,29
18    12678486    rs12966424    A    G    63.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=9.03;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262127    GT:AD:DP:GQ:PL    0/1:4,3:7:93.18:93,0,110
18    12691610    rs12960997    A    G    70.45    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=7.83;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262127    GT:AD:DP:GQ:PL    0/1:5,4:9:99:100,0,180
18    12695415    rs34277169    C    A    112.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.81;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262127    GT:AD:DP:GQ:PL    0/1:2,4:6:62.38:143,0,62
18    12700849    rs9962006    G    A    78.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.63;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262127    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:109,0,27
18    12700918    rs137976891    CATAT    C    638.60    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=3.73;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=103.4707;IndelType=D;MQ=51.77;MQ0=0;MQRankSum=-0.76;QD=30.41;ReadPosRankSum=1.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262127    GT:AD:DP:GQ:PL    0/1:8,13:21:99:678,0,580
18    12701326    rs45596833    A    C    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262127    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
18    12703067    rs11537900    A    G    154.71    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=3.424;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=14.06;ReadPosRankSum=-0.143;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP76;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262127    GT:AD:DP:GQ:PL    0/1:5,6:11:99:185,0,173
18    12703192    rs3809919    C    T    66.60    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.51;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317615    GT:AD:DP:GQ:PL    0/1:4,3:7:96.60:97,0,118
18    12718593    rs2302768    A    G    775.14    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.867;DB;DP=58;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.734;MQ=59.68;MQ0=0;MQRankSum=-0.755;QD=13.36;ReadPosRankSum=-1.719;SNPEFF_AMINO_ACID_CHANGE=S104;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12718516_12718634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539202    GT:AD:DP:GQ:PL    0/1:30,28:58:99:805,0,925
18    12725236    rs12373207    G    T    65.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=10.9;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317615    GT:AD:DP:GQ:PL    0/1:3,3:6:95.39:95,0,103
18    12825705    rs4239309    A    T    443.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.98;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309660    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:476,39,0
18    12951738    rs1474043    G    A    237.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;MQRankSum=-0.53;QD=15.86;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262124    GT:AD:DP:GQ:PL    0/1:6,9:15:99:268,0,195
18    12955439    rs71370920    CT    C    411.05    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DB;DP=42;FS=3.174;HRun=12;HaplotypeScore=135.6435;IndelType=D;MQ=52.52;MQ0=0;MQRankSum=0.654;QD=9.79;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262124    GT:AD:DP:GQ:PL    0/1:16,26:42:99:450,0,235
18    12963146    rs71370921    AT    A    192.36    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=2.513;DB;DP=29;FS=0.0;HRun=10;HaplotypeScore=103.5022;IndelType=D;MQ=59.2;MQ0=0;MQRankSum=1.537;QD=6.63;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262124    GT:AD:DP:GQ:PL    0/1:17,12:29:99:231,0,416
18    12979028    rs56263236    T    C    91.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=55.21;MQ0=0;MQRankSum=0.937;QD=9.13;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262124    GT:AD:DP:GQ:PL    0/1:4,6:10:97.47:121,0,97
18    12982760    rs12955780    G    A    460.56    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.229;DB;DP=35;Dels=0.0;FS=3.399;HRun=4;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.778;QD=13.16;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262124    GT:AD:DP:GQ:PL    0/1:19,16:35:99:491,0,702
18    12984144    rs6505776    C    A    1252.89    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.938;DB;DP=94;Dels=0.0;FS=4.148;HRun=2;HaplotypeScore=1.6553;MQ=59.56;MQ0=0;MQRankSum=0.722;QD=13.33;ReadPosRankSum=-1.259;SNPEFF_AMINO_ACID_CHANGE=T342N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_12984039_12984189;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEH1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262124    GT:AD:DP:GQ:PL    0/1:48,46:94:99:1283,0,1605
18    12984340    rs2902856    A    C    693.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.279;DB;DP=44;Dels=0.0;FS=6.335;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.692;QD=15.76;ReadPosRankSum=-0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262124    GT:AD:DP:GQ:PL    0/1:22,22:44:99:723,0,661
18    13049948    rs11463677    G    GA    166.60    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=20;FS=0.0;HRun=7;HaplotypeScore=44.1563;IndelType=I;MQ=61.07;MQ0=0;MQRankSum=0.953;QD=8.33;ReadPosRankSum=-1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325971    GT:AD:DP:GQ:PL    0/1:13,7:20:99:206,0,213
18    13056333    rs2282541    C    T    908.41    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.978;DB;DP=46;Dels=0.0;FS=2.776;HRun=0;HaplotypeScore=0.8941;MQ=59.59;MQ0=0;MQRankSum=-1.323;QD=19.75;ReadPosRankSum=-0.737;SNPEFF_AMINO_ACID_CHANGE=H1248;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13055779_13056697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506447    GT:AD:DP:GQ:PL    0/1:18,28:46:99:938,0,482
18    13068132    rs578208    T    C    1154.69    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=3.96;DB;DP=76;Dels=0.0;FS=4.581;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.094;QD=15.19;ReadPosRankSum=0.761;SNPEFF_AMINO_ACID_CHANGE=S1077P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13068093_13068236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430049    GT:AD:DP:GQ:PL    0/1:35,41:76:99:1185,0,993
18    13069782    rs6505780    C    T    610.99    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.181;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.479;QD=13.0;ReadPosRankSum=0.053;SNPEFF_AMINO_ACID_CHANGE=L1105F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13069737_13069855;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325971    GT:AD:DP:GQ:PL    0/1:24,23:47:99:641,0,732
18    13072979    rs1787013    T    C    958.32    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.588;DB;DP=70;Dels=0.0;FS=0.98;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.513;QD=13.69;ReadPosRankSum=0.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325971    GT:AD:DP:GQ:PL    0/1:32,38:70:99:988,0,1022
18    13087789    rs472992    A    G    297.06    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=11.43;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325971    GT:AD:DP:GQ:PL    0/1:16,10:26:99:327,0,578
18    13087815    rs527839    G    A    117.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7074;MQ=58.55;MQ0=0;MQRankSum=-0.429;QD=7.34;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325971    GT:AD:DP:GQ:PL    0/1:10,5:16:99:147,0,366
18    13095401    rs476191    A    T    280.56    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=16.5;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507254    GT:AD:DP:GQ:PL    0/1:8,9:17:99:311,0,266
18    13095609    rs474337    T    C    892.43    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.172;DB;DP=57;Dels=0.0;FS=4.325;HRun=1;HaplotypeScore=1.5983;MQ=59.6;MQ0=0;MQRankSum=1.5;QD=15.66;ReadPosRankSum=-0.828;SNPEFF_AMINO_ACID_CHANGE=L125P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13095502_13095680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540847    GT:AD:DP:GQ:PL    0/1:22,35:57:99:922,0,659
18    13116432    rs1786263    G    T    757.50    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.452;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8924;MQ=59.9;MQ0=0;MQRankSum=1.372;QD=15.46;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=R1853L;SNPEFF_CODON_CHANGE=cGg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13116376_13116502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP192;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325971    GT:AD:DP:GQ:PL    0/1:23,26:49:99:787,0,620
18    13644992    rs11357998    CT    C    155.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=11;HaplotypeScore=28.2541;IndelType=D;MQ=60.0;MQ0=0;QD=19.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359446    GT:AD:DP:GQ:PL    1/1:0,8:8:23.97:197,24,0
18    13666768    rs1149356    A    G    204.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322247    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
18    13731313    rs1284190    G    A    129.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383314    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
18    13731407    rs61281036    C    CA    189.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;DB;DP=12;FS=0.0;HRun=14;HaplotypeScore=51.275;IndelType=I;MQ=59.89;MQ0=0;MQRankSum=-0.158;QD=15.83;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383314    GT:AD:DP:GQ:PL    1/1:4,8:12:13.57:232,14,0
18    13732053    rs4797806    A    G    395.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=28.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262173    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:429,33,0
18    13732059    rs4797807    C    T    348.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262173    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:382,30,0
18    13742365    rs4239313    A    C    351.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.55;MQ0=0;QD=22.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262173    GT:AD:DP:GQ:PL    1/1:0,15:16:30.07:385,30,0
18    13746111    rs4797809    G    A    903.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262173    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:936,69,0
18    13746276    rs115462439    C    T    559.38    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.844;DB;DP=46;Dels=0.0;FS=1.159;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.097;QD=12.16;ReadPosRankSum=-0.809;SNPEFF_AMINO_ACID_CHANGE=Y157;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13746219_13746336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535051    GT:AD:DP:GQ:PL    0/1:26,20:46:99:589,0,845
18    13759816    rs4797812    T    C    210.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262173    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
18    13759820    rs4797813    G    T    185.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262173    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:218,18,0
18    13824169    rs73428137    G    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC5R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324750    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
18    13825727    rs1541276    A    C    397.17    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.574;DB;DP=40;Dels=0.0;FS=3.51;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.213;QD=9.93;ReadPosRankSum=0.61;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_13825543_13826861;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC5R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324750    GT:AD:DP:GQ:PL    0/1:26,14:40:99:427,0,843
18    13826088    rs17848292    C    T    702.01    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=2.756;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.03;MQ0=0;MQRankSum=-0.16;QD=14.63;ReadPosRankSum=-0.074;SNPEFF_AMINO_ACID_CHANGE=D108;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13825543_13826861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC5R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324750    GT:AD:DP:GQ:PL    0/1:24,23:48:99:732,0,718
18    13826391    rs2236700    C    G    2867.40    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=207;DS;Dels=0.0;FS=4.819;HRun=0;HaplotypeScore=3.4525;MQ=60.0;MQ0=0;MQRankSum=-1.775;QD=13.85;ReadPosRankSum=-1.572;SNPEFF_AMINO_ACID_CHANGE=F209L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13825543_13826861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC5R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324750    GT:AD:DP:GQ:PL    0/1:112,94:207:99:2897,0,3313
18    13826508    rs2236701    C    T    1160.83    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.907;DB;DP=87;Dels=0.0;FS=3.105;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=13.34;ReadPosRankSum=-0.552;SNPEFF_AMINO_ACID_CHANGE=T248;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_13825543_13826861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC5R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324750    GT:AD:DP:GQ:PL    0/1:49,38:87:99:1191,0,1467
18    13826837    rs11080686    A    C    173.33    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=9.12;ReadPosRankSum=0.718;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC5R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324750    GT:AD:DP:GQ:PL    0/1:12,7:19:99:203,0,431
18    13919897    rs8083854    T    C    4239.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.68;MQ0=0;QD=30.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327606    GT:AD:DP:GQ:PL    1/1:0,138:138:99:4239,340,0
18    14105923    rs2159940    T    C    1889.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_AMINO_ACID_CHANGE=K206E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14099942_14106408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF519;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309305    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1922,153,0
18    14106039    rs62086326    T    C    611.68    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=44;Dels=0.0;FS=1.189;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.564;QD=13.9;ReadPosRankSum=0.493;SNPEFF_AMINO_ACID_CHANGE=N167S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14099942_14106408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF519;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309305    GT:AD:DP:GQ:PL    0/1:23,21:44:99:642,0,825
18    14152953    rs12969945    A    G    563.31    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.574;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.12;MQ0=0;MQRankSum=-0.399;QD=12.8;ReadPosRankSum=-1.645;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC006557.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309251    GT:AD:DP:GQ:PL    0/1:23,21:44:99:593,0,720
18    14152987    rs56352449    T    G    1150.88    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=4.646;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3046;MQ=52.16;MQ0=0;MQRankSum=1.891;QD=12.93;ReadPosRankSum=-0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC006557.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309251    GT:AD:DP:GQ:PL    0/1:51,38:89:99:1181,0,1405
18    14157291    rs9959262    A    T    1368.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.89;MQ0=0;QD=36.02;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC006557.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309251    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1402,102,0
18    14157373    rs7505684    T    A    284.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.75;MQ0=0;QD=31.63;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC006557.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309251    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:318,24,0
18    14179603    rs4797872    A    G    615.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=48.5;MQ0=1;QD=22.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    1/1:0,27:27:54.14:648,54,0
18    14183414    rs507579    C    A    208.22    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9398;MQ=50.27;MQ0=0;MQRankSum=1.666;QD=23.14;ReadPosRankSum=-0.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:2,7:9:0.64:237,0,1
18    14183509    rs77502797    A    G    83.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.3544;MQ=46.63;MQ0=2;MQRankSum=-4.704;QD=2.52;ReadPosRankSum=1.982;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:18,15:33:99:113,0,679
18    14183517    rs114542015    C    T    61.40    QDFilter2    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=0.183;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=9.0965;MQ=48.95;MQ0=3;MQRankSum=-3.617;QD=1.57;ReadPosRankSum=2.886;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:29,10:39:91.39:91,0,898
18    14183550    rs508563    G    A    1341.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=3.172;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=51.89;MQ0=3;MQRankSum=5.027;QD=24.38;ReadPosRankSum=0.332;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    1/1:15,40:55:31.83:1374,32,0
18    14183638    rs75698625    G    C    1524.01    HaplotypeScoreFilter13;MQRankSumFilter12_5;SnpCluster    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=4.55;DB;DP=250;DS;Dels=0.0;FS=12.933;HRun=0;HaplotypeScore=80.9352;MQ=47.45;MQ0=7;MQRankSum=-12.965;QD=6.1;ReadPosRankSum=4.774;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:144,106:250:99:1554,0,4934
18    14183642    rs142824914    C    G    44.14    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.075;DB;DP=250;DS;Dels=0.0;FS=2.688;HRun=0;HaplotypeScore=92.9275;MQ=46.5;MQ0=11;MQRankSum=-4.183;QD=0.18;ReadPosRankSum=-1.757;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:217,33:250:74.14:74,0,6194
18    14183646    rs62085004    C    T    81.10    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.045;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=61.8175;MQ=46.69;MQ0=10;MQRankSum=-3.944;QD=0.32;ReadPosRankSum=-0.355;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000431648    GT:AD:DP:GQ:PL    0/1:215,33:249:99:111,0,6167
18    14183720    rs565541    C    T    4280.93    HaplotypeScoreFilter13    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.693;DB;DP=222;DS;Dels=0.0;FS=23.073;HRun=0;HaplotypeScore=18.5386;MQ=47.51;MQ0=27;MQRankSum=11.11;QD=19.28;ReadPosRankSum=-0.935;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:89,132:222:99:4281,0,764
18    14183734    rs62085005    A    G    828.12    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=249;DS;Dels=0.0;FS=44.305;HRun=0;HaplotypeScore=7.4196;MQ=47.67;MQ0=30;MQRankSum=-11.698;QD=3.33;ReadPosRankSum=0.727;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:148,101:249:99:858,0,5100
18    14183747    rs62085006    T    C    678.28    HaplotypeScoreFilter13    AB=0.788;AC=1;AF=0.50;AN=2;BaseQRankSum=3.159;DB;DP=250;DS;Dels=0.0;FS=42.65;HRun=0;HaplotypeScore=45.137;MQ=47.15;MQ0=31;MQRankSum=-7.599;QD=2.71;ReadPosRankSum=0.447;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:197,53:250:99:708,0,5191
18    14183840    rs62085007    T    A    1000.94    FSFilter60    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=162;DS;Dels=0.0;FS=85.459;HRun=1;HaplotypeScore=1.6988;MQ=48.29;MQ0=12;MQRankSum=-7.202;QD=6.18;ReadPosRankSum=3.035;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:111,51:162:99:1031,0,3411
18    14184251    rs78865458    G    C    102.78    MQFilter40    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.454;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.95;MQ0=0;MQRankSum=-3.592;QD=5.14;ReadPosRankSum=-0.206;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:9,11:20:99:133,0,251
18    14184255    rs73424301    C    A    105.79    MQFilter40    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.859;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9916;MQ=37.45;MQ0=0;MQRankSum=-3.266;QD=5.88;ReadPosRankSum=-1.055;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:7,11:18:99:136,0,218
18    14184311    rs78586839    G    C    91.21    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.18;MQ0=0;MQRankSum=-1.38;QD=15.2;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399814    GT:AD:DP:GQ:PL    0/1:2,4:6:64.83:121,0,65
18    14198458    .    A    G    633.91    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=0.603;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.19;MQ0=0;MQRankSum=-0.053;QD=10.74;ReadPosRankSum=0.893;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431648    GT:AD:DP:GQ:PL    0/1:33,26:59:99:664,0,908
18    14221830    rs8096188    T    C    318.06    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.047;DB;DP=23;Dels=0.0;FS=4.993;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.092;QD=13.83;ReadPosRankSum=1.323;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431648    GT:AD:DP:GQ:PL    0/1:11,12:23:99:348,0,305
18    14244753    rs185521309    C    T    43.25    QDFilter2    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=1.551;DB;DP=70;Dels=0.0;FS=3.699;HRun=1;HaplotypeScore=0.5784;MQ=55.73;MQ0=0;MQRankSum=-4.62;QD=0.62;ReadPosRankSum=-1.769;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:58,12:70:73.24:73,0,2042
18    14244803    rs112151010    C    T    193.55    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.024;DB;DP=76;Dels=0.0;FS=10.744;HRun=3;HaplotypeScore=1.6809;MQ=53.33;MQ0=0;MQRankSum=-5.613;QD=2.55;ReadPosRankSum=0.809;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:55,21:76:99:224,0,1709
18    14244853    .    A    G    162.57    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=2.867;DP=49;Dels=0.0;FS=8.7;HRun=0;HaplotypeScore=0.0;MQ=51.31;MQ0=0;MQRankSum=-5.556;QD=3.32;ReadPosRankSum=-0.473;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:32,17:49:99:193,0,1109
18    14244859    .    C    G    182.02    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=2.312;DP=45;Dels=0.0;FS=2.31;HRun=0;HaplotypeScore=0.0;MQ=51.22;MQ0=0;MQRankSum=-5.228;QD=4.04;ReadPosRankSum=0.059;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:29,16:45:99:212,0,1002
18    14251555    .    C    A    74.25    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=0.291;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=14.2825;MQ=34.56;MQ0=4;MQRankSum=-2.269;QD=1.81;ReadPosRankSum=-2.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:32,9:41:99:104,0,781
18    14251574    .    A    T    83.29    MQFilter40;QDFilter2    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.291;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=31.12;MQ0=9;MQRankSum=-1.803;QD=1.81;ReadPosRankSum=0.407;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:34,12:46:99:113,0,654
18    14251590    .    G    A    89.31    MQFilter40;QDFilter2    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=1.448;DP=49;Dels=0.0;FS=2.066;HRun=2;HaplotypeScore=0.0;MQ=27.33;MQ0=15;MQRankSum=-1.533;QD=1.82;ReadPosRankSum=1.874;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:34,15:49:99:119,0,568
18    14251608    .    C    T    95.33    MQFilter40;QDFilter2    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DP=52;Dels=0.0;FS=5.076;HRun=1;HaplotypeScore=6.6959;MQ=23.72;MQ0=18;MQRankSum=-0.937;QD=1.83;ReadPosRankSum=1.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:35,17:52:99:125,0,498
18    14251619    .    A    G    104.33    MQFilter40;QDFilter2    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.269;DP=58;Dels=0.0;FS=8.235;HRun=1;HaplotypeScore=6.6959;MQ=23.24;MQ0=20;MQRankSum=-0.978;QD=1.8;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD20A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427989    GT:AD:DP:GQ:PL    0/1:39,19:58:99:134,0,533
18    14392456    rs9303806    T    C    1064.06    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.18;MQ0=1;QD=29.56;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1097,99,0
18    14513535    rs58737667    T    TAC    769.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.041;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=52.0286;IndelType=I;MQ=50.2;MQ0=0;MQRankSum=0.0;QD=38.48;ReadPosRankSum=-1.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358970    GT:AD:DP:GQ:PL    1/1:2,16:20:24.84:812,25,0
18    14529182    rs7239137    G    T    152.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.06;MQ0=0;QD=21.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358970    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:185,15,0
18    14533105    .    G    C    3322.87    MQFilter40    AC=2;AF=1.00;AN=2;DP=239;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9202;MQ=18.86;MQ0=67;QD=13.9;SNPEFF_AMINO_ACID_CHANGE=S337C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14533060_14533197;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358970    GT:AD:DP:GQ:PL    1/1:51,187:239:99:3323,342,0
18    14534886    .    A    C    213.41    MQFilter40;QDFilter2    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.194;DP=152;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=17.21;MQ0=53;MQRankSum=-0.862;QD=1.4;ReadPosRankSum=-1.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358970    GT:AD:DP:GQ:PL    0/1:111,41:152:99:243,0,1165
18    14535001    .    G    C    126.98    MQFilter40;QDFilter2    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DP=171;Dels=0.0;FS=8.154;HRun=2;HaplotypeScore=0.0;MQ=15.37;MQ0=72;MQRankSum=-0.417;QD=0.74;ReadPosRankSum=-0.103;SNPEFF_AMINO_ACID_CHANGE=G272;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14534900_14535006;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358970    GT:AD:DP:GQ:PL    0/1:127,44:171:99:157,0,1100
18    14538010    rs6505912    T    C    5132.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;DB;DP=156;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3249;MQ=48.43;MQ0=11;MQRankSum=0.327;QD=32.9;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358970    GT:AD:DP:GQ:PL    1/1:7,149:156:99:5133,354,0
18    14542890    rs45469098    G    C    7594.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.545;DB;DP=235;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.9189;MQ=56.74;MQ0=0;MQRankSum=3.423;QD=32.32;ReadPosRankSum=-1.063;SNPEFF_AMINO_ACID_CHANGE=H86D;SNPEFF_CODON_CHANGE=Cat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14542625_14543145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358970    GT:AD:DP:GQ:PL    1/1:4,231:235:99:7595,596,0
18    14543139    rs28535987    T    C    4066.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.3;MQ0=1;QD=30.57;SNPEFF_AMINO_ACID_CHANGE=T3A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14542625_14543145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POTEC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358970    GT:AD:DP:GQ:PL    1/1:0,133:133:99:4066,337,0
18    14613120    .    C    T    32.76    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=10.33;MQ0=15;QD=1.82;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,18:18:6.01:64,6,0
18    14613454    rs75909644    T    G    1840.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=35.24;MQ0=0;QD=26.68;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,69:69:99:1874,174,0
18    14613527    rs146167236    T    C    722.54    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.317;DB;DP=65;Dels=0.0;FS=9.359;HRun=1;HaplotypeScore=0.9665;MQ=35.21;MQ0=3;MQRankSum=1.162;QD=11.12;ReadPosRankSum=-1.697;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,30:65:99:753,0,832
18    14613815    rs12960773    A    G    1845.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.23;MQ0=4;QD=31.81;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:4,54:58:99:1878,141,0
18    14752768    rs45620343    G    A    1018.07    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.698;DB;DP=80;Dels=0.0;FS=3.096;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=2.302;QD=12.57;ReadPosRankSum=1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:46,34:80:99:1048,0,1577
18    14752957    rs12457503    G    A    778.19    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.81;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.39;QD=12.97;ReadPosRankSum=-0.435;SNPEFF_AMINO_ACID_CHANGE=L152;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14752838_14753011;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:35,25:60:99:808,0,1229
18    14757632    rs9748507    A    T    94.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=1.307;QD=10.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:5,4:9:99:125,0,178
18    14763745    rs149039636    C    T    2725.09    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=7.109;DB;DP=184;Dels=0.0;FS=12.02;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.768;QD=14.81;ReadPosRankSum=1.109;SNPEFF_AMINO_ACID_CHANGE=T294M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14763685_14764089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:96,88:184:99:2755,0,2615
18    14779969    rs9675365    C    G    560.66    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.194;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.21;MQ0=0;MQRankSum=1.647;QD=7.9;ReadPosRankSum=-1.136;SNPEFF_AMINO_ACID_CHANGE=F477L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14779959_14780020;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:45,26:71:99:591,0,1356
18    14780082    rs11080793    G    A    522.03    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.235;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.711;QD=18.0;ReadPosRankSum=0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:10,19:29:99:552,0,304
18    14791236    rs9709917    T    G    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.24;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,109
18    14796214    rs9303863    G    T    2473.66    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=5.516;DB;DP=133;Dels=0.0;FS=11.663;HRun=3;HaplotypeScore=1.6643;MQ=56.12;MQ0=0;MQRankSum=-1.616;QD=18.6;ReadPosRankSum=0.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:49,84:133:99:2504,0,1352
18    14796443    rs9676173    G    T    817.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.245;DB;DP=48;Dels=0.0;FS=5.492;HRun=1;HaplotypeScore=0.0;MQ=55.35;MQ0=0;MQRankSum=0.287;QD=17.03;ReadPosRankSum=-1.714;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447268    GT:AD:DP:GQ:PL    0/1:18,30:48:99:847,0,608
18    14797913    rs80095701    C    T    318.85    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.98;MQ0=0;MQRankSum=-3.294;QD=11.81;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447268    GT:AD:DP:GQ:PL    0/1:12,15:27:99:349,0,420
18    14797914    rs9945819    A    G    309.35    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.882;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.23;MQ0=0;MQRankSum=-3.322;QD=11.9;ReadPosRankSum=-0.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447268    GT:AD:DP:GQ:PL    0/1:11,15:26:99:339,0,388
18    14814651    .    G    T    154.36    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.269;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.75;MQ0=10;MQRankSum=-5.172;QD=2.76;ReadPosRankSum=-1.635;SNPEFF_AMINO_ACID_CHANGE=G136V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14814620_14814710;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320584    GT:AD:DP:GQ:PL    0/1:33,23:56:99:184,0,966
18    14848820    rs4090319    C    T    1741.48    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=99;Dels=0.0;FS=2.178;HRun=0;HaplotypeScore=0.0;MQ=45.93;MQ0=12;MQRankSum=7.099;QD=17.59;ReadPosRankSum=0.932;SNPEFF_AMINO_ACID_CHANGE=T371M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14848715_14848928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320584    GT:AD:DP:GQ:PL    0/1:45,54:99:99:1771,0,675
18    14848821    rs28555630    G    A    604.48    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.402;DB;DP=101;Dels=0.0;FS=0.964;HRun=5;HaplotypeScore=0.0;MQ=45.91;MQ0=12;MQRankSum=-6.911;QD=5.98;ReadPosRankSum=-0.967;SNPEFF_AMINO_ACID_CHANGE=T371;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14848715_14848928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320584    GT:AD:DP:GQ:PL    0/1:60,41:101:99:634,0,1798
18    14848935    rs3878726    C    T    1132.21    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.912;DB;DP=121;Dels=0.0;FS=3.048;HRun=0;HaplotypeScore=0.9916;MQ=41.7;MQ0=10;MQRankSum=-1.965;QD=9.36;ReadPosRankSum=-1.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277669    GT:AD:DP:GQ:PL    0/1:62,58:121:99:1162,0,1633
18    14850375    rs3126404    G    A    273.46    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.983;DB;DP=51;Dels=0.0;FS=1.311;HRun=2;HaplotypeScore=0.8321;MQ=44.68;MQ0=1;MQRankSum=-1.66;QD=5.36;ReadPosRankSum=-1.746;SNPEFF_AMINO_ACID_CHANGE=L1067;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14850213_14850381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:34,17:51:99:303,0,1072
18    14851370    rs1970446    T    G    69.92    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.86;MQ0=0;MQRankSum=0.322;QD=8.74;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000277669    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,183
18    14851756    rs148887033    G    A    98.62    QDFilter2    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.51;DB;DP=87;Dels=0.0;FS=5.74;HRun=0;HaplotypeScore=1.5253;MQ=41.28;MQ0=19;MQRankSum=-6.033;QD=1.13;ReadPosRankSum=-1.515;SNPEFF_AMINO_ACID_CHANGE=T1152;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14851508_14852737;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    0/1:51,36:87:99:129,0,1727
18    14852335    rs12386087    C    A    1348.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=31.09;MQ0=4;QD=22.85;SNPEFF_AMINO_ACID_CHANGE=N1345K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_14851508_14852737;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD30B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358984    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1381,126,0
18    14888726    rs786064    C    A    1746.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=49.62;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1780,135,0
18    14999934    rs62087315    G    A    40.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,2:4:70.84:71,0,73
18    15005736    rs4890719    G    A    185.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=26.48;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:218,18,0
18    15005785    rs4890720    C    T    81.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.72;QD=13.62;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:66.38:112,0,66
18    15057119    .    C    T    287    MQFilter40    AC=2;AF=1.00;AN=2;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.11;MQ0=1;QD=26.09;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:320,27,0
18    15254946    rs142380805    A    T    235    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.63;MQ0=0;MQRankSum=-0.865;QD=16.79;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,8:14:99:265,0,202
18    15271531    rs6565759    T    C    1510.39    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.801;DB;DP=106;Dels=0.0;FS=2.545;HRun=0;HaplotypeScore=1.865;MQ=52.22;MQ0=0;MQRankSum=-2.275;QD=14.25;ReadPosRankSum=0.009;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:56,50:106:99:1540,0,1830
18    15272152    rs190079785    G    A    30.39    QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8894;MQ=40.49;MQ0=0;MQRankSum=-4.532;QD=0.32;ReadPosRankSum=0.027;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:82,13:95:60.38:60,0,2426
18    15272157    .    G    T    30.39    QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8894;MQ=40.21;MQ0=0;MQRankSum=-4.543;QD=0.32;ReadPosRankSum=-0.049;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:82,13:95:60.38:60,0,2407
18    15323173    .    G    A    175.13    MQFilter40    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.85;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.23;MQ0=9;MQRankSum=1.112;QD=4.17;ReadPosRankSum=-0.586;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AP005901.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333851    GT:AD:DP:GQ:PL    0/1:27,12:42:99:205,0,733
18    15323189    .    T    C    56.72    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.62;MQ0=12;MQRankSum=0.389;QD=1.13;ReadPosRankSum=0.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AP005901.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333851    GT:AD:DP:GQ:PL    0/1:40,10:50:86.72:87,0,1013
18    15323200    rs111431963    G    T    291.85    MQFilter40    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.034;DB;DP=62;Dels=0.0;FS=5.028;HRun=1;HaplotypeScore=0.0;MQ=37.42;MQ0=12;MQRankSum=-0.875;QD=4.71;ReadPosRankSum=1.283;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AP005901.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333851    GT:AD:DP:GQ:PL    0/1:43,19:62:99:322,0,1147
18    15323276    .    A    T    604.82    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=1.921;DP=101;Dels=0.0;FS=6.155;HRun=2;HaplotypeScore=1.5226;MQ=46.52;MQ0=8;MQRankSum=-4.938;QD=5.99;ReadPosRankSum=4.522;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=AP005901.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333851    GT:AD:DP:GQ:PL    0/1:66,35:101:99:635,0,2244
18    18534702    rs2663699    T    C    96.71    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=0.513;DB;DP=73;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=0.9947;MQ=52.1;MQ0=1;MQRankSum=-4.242;QD=1.32;ReadPosRankSum=1.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399799    GT:AD:DP:GQ:PL    0/1:62,11:73:99:127,0,2170
18    18534948    .    G    C    353.83    PASS    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.614;DP=140;Dels=0.0;FS=36.203;HRun=0;HaplotypeScore=4.4331;MQ=43.08;MQ0=0;MQRankSum=-2.784;QD=2.53;ReadPosRankSum=-0.096;SNPEFF_AMINO_ACID_CHANGE=Q1217E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_18534744_18535005;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROCK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399799    GT:AD:DP:GQ:PL    0/1:117,23:140:99:384,0,3239
18    18623974    rs73959778    C    A    109.44    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.222;QD=5.47;ReadPosRankSum=0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399799    GT:AD:DP:GQ:PL    0/1:15,5:20:99:139,0,563
18    18642267    rs78288302    A    G    604.61    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.796;DB;DP=58;Dels=0.0;FS=5.045;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.232;QD=10.42;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ROCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399799    GT:AD:DP:GQ:PL    0/1:31,27:58:99:635,0,982
18    18983766    rs2117317    C    T    1023.76    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.226;DB;DP=74;Dels=0.0;FS=5.859;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.055;QD=13.83;ReadPosRankSum=-0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    0/1:38,36:74:99:1054,0,1143
18    19020160    rs9948725    G    A    449.98    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=4.046;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.475;QD=13.64;ReadPosRankSum=1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    0/1:19,14:33:99:480,0,571
18    19024150    rs4368249    T    G    1092.39    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.584;DB;DP=80;Dels=0.0;FS=2.602;HRun=1;HaplotypeScore=1.4725;MQ=59.65;MQ0=0;MQRankSum=0.064;QD=13.65;ReadPosRankSum=-0.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    0/1:43,36:80:99:1122,0,1430
18    19034556    rs3794938    T    C    348.60    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.283;DB;DP=34;Dels=0.0;FS=5.402;HRun=2;HaplotypeScore=1.6439;MQ=59.32;MQ0=0;MQRankSum=1.422;QD=10.25;ReadPosRankSum=1.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    0/1:19,15:34:99:379,0,638
18    19065494    rs7234335    C    G    397.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:431,33,0
18    19075808    rs3764502    C    T    514.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=36;Dels=0.0;FS=1.608;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.649;QD=14.29;ReadPosRankSum=0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    0/1:18,18:36:99:545,0,493
18    19079537    rs8087553    A    G    92.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
18    19079853    rs4800747    A    G    1187.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.39;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=E1076;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_19079690_19080267;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    1/1:0,38:38:93.29:1221,93,0
18    19088676    rs35816889    G    GA    31.21    QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=30;FS=2.48;HRun=18;HaplotypeScore=183.989;IndelType=I;MQ=49.96;MQ0=0;MQRankSum=0.0;QD=1.04;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GREB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269218    GT:AD:DP:GQ:PL    0/1:18,6:30:37.47:70,0,37
18    19110466    rs35451929    TG    T    923.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=10;HaplotypeScore=221.0524;IndelType=D;MQ=60.33;MQ0=0;QD=17.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269214    GT:AD:DP:GQ:PL    1/1:14,40:54:99:965,114,0
18    19115896    rs4800780    A    T    950.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269214    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:983,75,0
18    19119801    rs1818274    C    T    701.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269214    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:735,54,0
18    19119974    rs35031202    GAT    G    755.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=124.9973;IndelType=D;MQ=61.96;MQ0=0;QD=19.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269214    GT:AD:DP:GQ:PL    1/1:15,22:38:69.04:797,69,0
18    19141096    rs6508480    C    T    426.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269214    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:459,33,0
18    19153494    rs973730    C    T    1571.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.42;SNPEFF_AMINO_ACID_CHANGE=T437;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_19153275_19155391;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269214    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1605,120,0
18    19154143    rs13381941    G    A    1728.43    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.089;DB;DP=101;Dels=0.0;FS=4.034;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-1.617;QD=17.11;ReadPosRankSum=-0.374;SNPEFF_AMINO_ACID_CHANGE=T221M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_19153275_19155391;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESCO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269214    GT:AD:DP:GQ:PL    0/1:43,58:101:99:1758,0,1335
18    19192255    rs2850556    C    T    934.75    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.202;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3696;MQ=59.35;MQ0=0;MQRankSum=0.075;QD=13.17;ReadPosRankSum=-0.836;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300413    GT:AD:DP:GQ:PL    0/1:38,33:71:99:965,0,1283
18    19192280    rs113606579    C    G    1249.20    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.729;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-1.626;QD=13.43;ReadPosRankSum=0.235;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_19192260_19192404;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300413    GT:AD:DP:GQ:PL    0/1:49,44:93:99:1279,0,1530
18    19208851    rs2847117    A    G    379.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.639;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.063;QD=11.16;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300413    GT:AD:DP:GQ:PL    0/1:17,17:34:99:409,0,473
18    19345550    rs45448301    C    T    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.61;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261537    GT:AD:DP:GQ:PL    0/1:2,3:5:69.19:108,0,69
18    19399738    rs8098807    T    A    327.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261537    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:361,27,0
18    19423963    rs3216119    GT    G    284.61    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=47.0071;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.442;QD=14.98;ReadPosRankSum=1.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261537    GT:AD:DP:GQ:PL    0/1:9,10:19:99:324,0,378
18    19780527    rs11352746    AC    A    929.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=4;HaplotypeScore=69.6081;IndelType=D;MQ=60.8;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269216    GT:AD:DP:GQ:PL    1/1:0,27:27:81.25:972,81,0
18    19995753    rs9946145    T    C    7142.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DB;DP=217;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.1569;MQ=59.16;MQ0=0;MQRankSum=1.7;QD=32.92;ReadPosRankSum=-1.265;SNPEFF_AMINO_ACID_CHANGE=P674;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_19993573_19997878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391403    GT:AD:DP:GQ:PL    1/1:1,216:217:99:7143,548,0
18    19996011    rs7227477    G    A    2600.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=43.37;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=L588;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_19993573_19997878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAGE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391403    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2633,214,0
18    20555219    rs2336916    T    C    612.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327155    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:645,51,0
18    20562518    rs7407415    G    A    296.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327155    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
18    20576181    rs4471804    G    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327155    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
18    20586245    rs72889626    C    T    188.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327155    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:221,18,0
18    20817276    rs12185467    G    C    184.95    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.858;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.588;QD=11.56;ReadPosRankSum=-1.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450466    GT:AD:DP:GQ:PL    0/1:9,7:16:99:215,0,327
18    20932384    rs8084251    A    G    151.24    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.9;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383233    GT:AD:DP:GQ:PL    0/1:3,5:8:99:181,0,100
18    20936378    rs34317927    G    A    138.30    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=17.29;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383233    GT:AD:DP:GQ:PL    0/1:2,6:8:60.48:168,0,60
18    20953485    rs9944662    C    A    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399707    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
18    20953720    rs8099409    G    A    780.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=L10F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_20953676_20953727;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450466    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:814,63,0
18    21010838    rs4800477    A    G    84.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383233    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
18    21017836    rs7226498    T    C    135.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.03;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542162    GT:AD:DP:GQ:PL    1/1:0,15:15:12.04:168,12,0
18    21033582    rs8086258    G    C    155.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=22.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339486    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:188,18,0
18    21043106    rs72884533    T    C    728.60    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=48;Dels=0.0;FS=2.065;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=15.18;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339486    GT:AD:DP:GQ:PL    0/1:20,28:48:99:759,0,694
18    21044607    rs2291993    G    A    581.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.109;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.6665;MQ=59.51;MQ0=0;MQRankSum=0.847;QD=15.31;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339486    GT:AD:DP:GQ:PL    0/1:19,19:38:99:612,0,636
18    21055092    rs7235571    A    C    727.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIOK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339486    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:760,57,0
18    21084098    rs303759    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269221    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
18    21088081    rs1652381    T    C    740.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269221    GT:AD:DP:GQ:PL    1/1:0,24:24:66.18:773,66,0
18    21100240    rs1367083    C    T    537.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.452;DB;DP=38;Dels=0.0;FS=1.512;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.17;QD=14.14;ReadPosRankSum=1.2;SNPEFF_AMINO_ACID_CHANGE=P151;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21100166_21100277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542734    GT:AD:DP:GQ:PL    0/1:19,19:38:99:567,0,512
18    21103909    rs891387    T    C    119.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=19.9;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269221    GT:AD:DP:GQ:PL    0/1:2,4:6:51.63:149,0,52
18    21103971    rs891386    T    G    105.33    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.429;QD=6.58;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269221    GT:AD:DP:GQ:PL    0/1:10,6:16:99:135,0,358
18    21104355    rs140268783    T    C    222.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.31;DB;DP=32;Dels=0.0;FS=11.816;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.805;QD=6.94;ReadPosRankSum=1.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269221    GT:AD:DP:GQ:PL    0/1:20,12:32:99:252,0,660
18    21109250    rs1788825    T    C    499.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_AMINO_ACID_CHANGE=F311;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21109143_21109262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542734    GT:AD:DP:GQ:PL    1/1:0,18:18:48.09:532,48,0
18    21109269    rs1652375    T    C    395.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:428,36,0
18    21109466    rs1652376    G    T    150.40    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    0/1:1,5:6:16.30:180,0,16
18    21113285    rs2510344    T    C    592.60    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=36;Dels=0.0;FS=1.547;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.13;QD=16.46;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269221    GT:AD:DP:GQ:PL    0/1:16,20:36:99:623,0,560
18    21116998    rs12964689    A    G    85.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540608    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
18    21119291    rs6507720    A    G    737.45    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.076;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.808;QD=15.36;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540608    GT:AD:DP:GQ:PL    0/1:22,26:48:99:767,0,704
18    21119777    rs1140458    G    A    820.39    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=1.16;DB;DP=46;Dels=0.0;FS=2.895;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.156;QD=17.83;ReadPosRankSum=-0.112;SNPEFF_AMINO_ACID_CHANGE=N613;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21119775_21119965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412552    GT:AD:DP:GQ:PL    0/1:19,27:46:99:850,0,566
18    21120035    rs7239575    T    C    225.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.193;QD=16.09;ReadPosRankSum=0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    0/1:6,8:14:99:255,0,206
18    21120444    rs1805082    T    C    222.39    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=32;Dels=0.0;FS=9.864;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.869;QD=6.95;ReadPosRankSum=0.492;SNPEFF_AMINO_ACID_CHANGE=I540V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21120412_21120501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412552    GT:AD:DP:GQ:PL    0/1:21,10:32:99:252,0,596
18    21120869    rs1788821    A    G    701.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=29.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    1/1:0,24:24:66.14:735,66,0
18    21123536    rs34878150    TA    T    223.40    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=77;FS=0.0;HRun=18;HaplotypeScore=380.0366;IndelType=D;MQ=56.45;MQ0=0;MQRankSum=0.96;QD=2.9;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    0/1:38,25:77:96.14:262,0,96
18    21124350    .    A    G    331.50    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.11;MQ0=0;MQRankSum=-0.334;QD=12.75;ReadPosRankSum=0.643;SNPEFF_AMINO_ACID_CHANGE=A378;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21124308_21124490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412552    GT:AD:DP:GQ:PL    0/1:12,14:26:99:361,0,407
18    21124834    rs35047242    A    G    133.98    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;MQRankSum=2.367;QD=11.16;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    0/1:7,5:12:99:164,0,214
18    21124907    rs55809701    A    AC    491.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.248;DB;DP=38;FS=0.0;HRun=9;HaplotypeScore=256.4642;IndelType=I;MQ=52.2;MQ0=0;MQRankSum=-0.152;QD=12.94;ReadPosRankSum=-0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    0/1:18,16:38:38.12:531,0,38
18    21124945    rs1788799    C    G    1222.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=1.9623;MQ=55.52;MQ0=0;QD=28.43;SNPEFF_AMINO_ACID_CHANGE=M324I;SNPEFF_CODON_CHANGE=atG/atC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21124924_21125113;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412552    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1256,99,0
18    21127910    rs2435307    C    T    1023.40    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=91;Dels=0.0;FS=0.876;HRun=0;HaplotypeScore=3.4463;MQ=59.49;MQ0=0;MQRankSum=0.378;QD=11.25;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    0/1:50,41:91:99:1053,0,1538
18    21140432    rs1805081    T    C    354.75    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.108;DB;DP=32;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=0.6651;MQ=59.28;MQ0=0;MQRankSum=-0.817;QD=11.09;ReadPosRankSum=0.171;SNPEFF_AMINO_ACID_CHANGE=H215R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21140195_21140444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    0/1:18,14:32:99:385,0,573
18    21148863    rs12970899    A    G    669.18    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.384;DB;DP=58;Dels=0.0;FS=1.046;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.148;QD=11.54;ReadPosRankSum=0.544;SNPEFF_AMINO_ACID_CHANGE=Y129;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21148787_21148962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269228    GT:AD:DP:GQ:PL    0/1:32,26:58:99:699,0,1034
18    21209988    rs11660305    G    A    244.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284207    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
18    21294117    rs34200895    TA    T    192.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=40.2054;IndelType=D;MQ=57.98;MQ0=0;QD=19.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:1,9:10:26.99:234,27,0
18    21338276    rs6507894    C    T    421.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:454,33,0
18    21338515    rs11308832    TC    T    342.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=6;HaplotypeScore=33.3654;IndelType=D;MQ=60.9;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:385,36,0
18    21395358    rs2155841    G    C    513.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:547,42,0
18    21400005    rs7244406    A    C    840.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,24:24:69.19:874,69,0
18    21400028    rs6507956    G    T    528.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:561,42,0
18    21404334    rs1941521    A    G    1154.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1187,99,0
18    21404696    rs1941520    C    T    166.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
18    21413869    rs9962023    T    C    5016.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7981;MQ=59.54;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=A965;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21413792_21413952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416669    GT:AD:DP:GQ:PL    1/1:1,149:151:99:5017,385,0
18    21414100    rs1109949    G    A    505.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:539,39,0
18    21414110    rs1109950    G    A    401.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:435,33,0
18    21437721    rs867448    A    G    879.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313654    GT:AD:DP:GQ:PL    1/1:0,27:27:81.18:913,81,0
18    21437931    rs80114457    G    C    943.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.286;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.839;QD=30.42;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=G1418;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21437808_21437952;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416669    GT:AD:DP:GQ:PL    1/1:1,30:31:51.62:976,52,0
18    21441717    rs12965685    C    T    828.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_AMINO_ACID_CHANGE=P1508;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21441610_21441771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416669    GT:AD:DP:GQ:PL    1/1:0,28:28:66.19:862,66,0
18    21473963    rs3745027    G    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
18    21483218    rs891277    A    T    585.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:619,48,0
18    21488106    rs12970745    A    G    174.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
18    21494218    rs2245433    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
18    21495483    rs1541836    T    C    1016.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,33:33:90.23:1049,90,0
18    21501329    rs45619834    T    C    239.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.648;QD=16.0;ReadPosRankSum=-0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    0/1:6,9:15:99:270,0,198
18    21511089    rs1154233    A    G    2564.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_AMINO_ACID_CHANGE=S1225G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21511026_21511165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,77:78:99:2598,202,0
18    21511172    rs1258107    G    C    1483.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1517,126,0
18    21526087    rs2288592    C    T    3175.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=59.51;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3209,235,0
18    21529604    rs1154242    G    A    404.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:437,33,0
18    21529722    rs2241643    G    A    1472.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1506,111,0
18    21531906    rs11873358    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
18    21534701    rs1051149    C    A    844.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:878,66,0
18    21534703    rs1051150    C    T    831.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269217    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:865,66,0
18    21662736    rs75254145    C    T    204.59    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.521;QD=13.64;ReadPosRankSum=1.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    0/1:8,7:15:99:235,0,276
18    21662816    rs2305024    A    C    613.36    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-0.856;QD=17.04;ReadPosRankSum=-0.593;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    0/1:13,23:36:99:643,0,444
18    21663141    rs9304423    C    A    355.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:388,30,0
18    21694618    rs4800176    G    A    1229.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6644;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    1/1:0,40:40:93.29:1262,93,0
18    21698540    rs8083625    C    T    1067.35    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=2.347;DB;DP=104;Dels=0.0;FS=0.751;HRun=3;HaplotypeScore=0.9789;MQ=58.43;MQ0=0;MQRankSum=0.345;QD=10.26;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    0/1:58,46:104:99:1097,0,1605
18    21698618    rs67869116    ATT    A    325.90    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=57;FS=0.0;HRun=16;HaplotypeScore=307.1512;IndelType=D;MQ=56.33;MQ0=0;MQRankSum=0.855;QD=5.72;ReadPosRankSum=0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    0/1:31,17:57:99:365,0,515
18    21705616    rs4392147    C    T    292.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.708;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=0.464;QD=10.84;ReadPosRankSum=-0.805;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    0/1:15,12:27:99:323,0,426
18    21705624    rs2306811    G    A    375.29    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.952;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=1.106;QD=14.43;ReadPosRankSum=1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    0/1:12,14:26:99:405,0,394
18    21705645    rs2306812    T    C    279.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.412;QD=18.64;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    0/1:6,9:15:99:310,0,199
18    21709867    rs4393652    A    T    1141.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=56.72;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304621    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1174,87,0
18    21710321    rs12970083    C    T    2488.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6483;MQ=59.42;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=N214;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21710277_21710381;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540918    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2521,190,0
18    21714226    rs139665498    TTG    T    89.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=120.6741;IndelType=D;MQ=46.91;MQ0=0;QD=8.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC39C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540918    GT:AD:DP:GQ:PL    1/1:3,7:10:16.60:131,17,0
18    21722986    rs148497433    CA    C    38.05    QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.025;DB;DP=24;FS=0.0;HRun=20;HaplotypeScore=163.4652;IndelType=D;MQ=52.29;MQ0=0;MQRankSum=1.708;QD=1.59;ReadPosRankSum=0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABYR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327201    GT:AD:DP:GQ:PL    0/1:10,9:24:77.08:77,0,87
18    21736933    rs1049683    T    G    886.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_AMINO_ACID_CHANGE=S392A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21735665_21736963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABYR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399481    GT:AD:DP:GQ:PL    1/1:0,29:29:66.22:919,66,0
18    21739725    rs1049684    T    C    641.25    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.679;DB;DP=65;Dels=0.0;FS=1.044;HRun=2;HaplotypeScore=0.7887;MQ=59.65;MQ0=0;MQRankSum=0.074;QD=9.87;ReadPosRankSum=0.56;SNPEFF_AMINO_ACID_CHANGE=P179;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21739436_21740033;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABYR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327201    GT:AD:DP:GQ:PL    0/1:40,25:65:99:671,0,1330
18    21743039    rs148811395    AT    A    84.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;FS=0.0;HRun=11;HaplotypeScore=18.7525;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=10.6;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABYR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327201    GT:AD:DP:GQ:PL    0/1:2,6:8:40.01:124,0,40
18    21745159    .    A    T    1219.67    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.112;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=59.65;MQ0=0;MQRankSum=-0.762;QD=18.76;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABYR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327201    GT:AD:DP:GQ:PL    0/1:25,40:65:99:1250,0,791
18    21747472    rs76435246    C    T    414.27    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.222;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.108;QD=11.2;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:22,15:37:99:444,0,785
18    21750111    rs72531210    A    AGT    272.35    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.493;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=52.5554;IndelType=I;MQ=60.77;MQ0=0;MQRankSum=-0.811;QD=19.45;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:8,6:14:99:311,0,272
18    21759593    rs12604451    T    C    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:2,3:5:64.96:110,0,65
18    21883552    rs1487377    G    A    501.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.502;DB;DP=35;Dels=0.0;FS=8.994;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.697;QD=14.34;ReadPosRankSum=-2.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:14,21:35:99:532,0,473
18    21891751    rs931359    A    G    60.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=15.19;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:91,0,29
18    21891975    rs2337961    A    G    981.16    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.915;DB;DP=82;Dels=0.0;FS=9.647;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-1.095;QD=11.97;ReadPosRankSum=0.744;SNPEFF_AMINO_ACID_CHANGE=S355;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_21891948_21892070;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:45,37:82:99:1011,0,1542
18    21894351    rs12966893    A    G    689.83    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.344;QD=23.79;ReadPosRankSum=-1.391;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:9,20:29:99:720,0,287
18    21894409    rs12966456    C    T    228.99    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=19.08;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:5,7:12:99:259,0,108
18    21894438    rs7240306    C    T    172.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
18    21897189    rs34306542    A    G    1044.76    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.473;DB;DP=68;Dels=0.0;FS=2.554;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.655;QD=15.36;ReadPosRankSum=-1.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1075,0,984
18    21897485    rs11323744    TA    T    561.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=9;HaplotypeScore=61.5152;IndelType=D;MQ=60.86;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    1/1:3,22:25:66.03:604,66,0
18    21898556    rs12955338    T    C    238.26    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.022;DB;DP=31;Dels=0.0;FS=1.661;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.506;QD=7.69;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:20,10:31:99:268,0,662
18    21901628    rs34481824    T    C    222.23    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.635;QD=18.52;ReadPosRankSum=0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:5,7:12:99:252,0,140
18    21912865    rs2848605    A    G    394.55    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.79;DB;DP=43;Dels=0.0;FS=4.019;HRun=0;HaplotypeScore=0.7887;MQ=59.46;MQ0=0;MQRankSum=1.749;QD=9.18;ReadPosRankSum=0.946;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319481    GT:AD:DP:GQ:PL    0/1:29,14:43:99:425,0,977
18    22008627    rs34548911    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPACT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284202    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
18    22008913    rs582358    C    T    878.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPACT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284202    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:911,66,0
18    22010421    rs9783924    C    T    1015.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPACT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284202    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1049,78,0
18    22017890    .    AT    A    249.58    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=3.885;DP=35;FS=4.501;HRun=10;HaplotypeScore=93.6792;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.624;QD=7.13;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPACT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284202    GT:AD:DP:GQ:PL    0/1:20,15:35:99:289,0,527
18    22018129    rs1791254    A    C    162.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPACT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284202    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
18    22020543    rs677688    C    G    2713.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.4;MQ0=0;QD=35.24;SNPEFF_AMINO_ACID_CHANGE=L151V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_22020460_22020582;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPACT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284202    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2746,202,0
18    22028183    .    C    A    100.77    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.935;DP=28;Dels=0.0;FS=14.423;HRun=2;HaplotypeScore=5.1225;MQ=47.12;MQ0=0;MQRankSum=-1.906;QD=3.6;ReadPosRankSum=1.967;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IMPACT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284202    GT:AD:DP:GQ:PL    0/1:7,21:28:99:131,0,207
18    22048547    rs16940765    T    C    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.37;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256906    GT:AD:DP:GQ:PL    0/1:2,2:4:67.77:71,0,68
18    22049016    rs17797951    G    A    267.72    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=29.75;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256906    GT:AD:DP:GQ:PL    0/1:1,8:9:14.67:298,0,15
18    22049140    rs8088140    A    C    35.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256906    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
18    23598160    rs607404    A    T    219.54    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.613;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.142;QD=8.78;ReadPosRankSum=0.142;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SS18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269137    GT:AD:DP:GQ:PL    0/1:16,9:25:99:250,0,565
18    23866584    rs34204451    AT    A    60.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=15;HaplotypeScore=29.2783;IndelType=D;MQ=61.07;MQ0=0;QD=6.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269142    GT:AD:DP:GQ:PL    1/1:3,6:10:16.79:102,17,0
18    23873463    rs1677016    T    C    1668.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=N600;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_23873390_23873495;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269142    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1701,123,0
18    23875336    rs1382260    T    A    734.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=58.95;MQ0=0;QD=33.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400466    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:768,60,0
18    23875338    rs140468533    G    C    268.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.873;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=58.89;MQ0=0;MQRankSum=-0.036;QD=12.8;ReadPosRankSum=-1.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400466    GT:AD:DP:GQ:PL    0/1:9,12:21:99:299,0,321
18    24039489    rs752856    A    C    616.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317932    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:650,48,0
18    24039964    rs111496304    AT    A    474.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=7;HaplotypeScore=46.5683;IndelType=D;MQ=60.63;MQ0=0;QD=27.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317932    GT:AD:DP:GQ:PL    1/1:1,16:17:51.11:516,51,0
18    24179490    rs35961335    G    A    955.33    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=2.954;DB;DP=61;Dels=0.0;FS=1.059;HRun=0;HaplotypeScore=0.7887;MQ=56.39;MQ0=0;MQRankSum=0.069;QD=15.66;ReadPosRankSum=-0.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317932    GT:AD:DP:GQ:PL    0/1:28,33:61:99:985,0,793
18    24442056    rs455671    A    G    613.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.565;DB;DP=35;Dels=0.0;FS=3.724;HRun=3;HaplotypeScore=0.9997;MQ=59.34;MQ0=0;MQRankSum=-0.856;QD=17.52;ReadPosRankSum=0.565;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383168    GT:AD:DP:GQ:PL    0/1:14,21:35:99:643,0,464
18    24442392    rs35248760    C    A    1697.86    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.721;DB;DP=119;Dels=0.0;FS=5.681;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.082;QD=14.27;ReadPosRankSum=0.609;SNPEFF_AMINO_ACID_CHANGE=P67;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_24442146_24442560;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383168    GT:AD:DP:GQ:PL    0/1:62,57:119:99:1728,0,1891
18    24445433    rs3875089    T    C    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383168    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,105
18    24445692    rs162008    C    T    878.89    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=5.322;DB;DP=69;Dels=0.0;FS=1.724;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.192;QD=12.74;ReadPosRankSum=-2.308;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_18_24445622_24445749;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000383168    GT:AD:DP:GQ:PL    0/1:35,34:69:99:909,0,982
18    24445847    rs162007    G    A    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AQP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383168    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:69,0,32
18    24628305    rs12458504    C    T    207.25    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.58;QD=20.72;ReadPosRankSum=-1.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284224    GT:AD:DP:GQ:PL    0/1:3,7:10:98.21:237,0,98
18    24628679    rs12456126    A    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284224    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
18    25565082    rs1220144    A    G    758.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=R666;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_25564964_25565197;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399380    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:792,60,0
18    25570228    rs1628684    G    C    1502.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7749;MQ=59.61;MQ0=0;QD=25.46;SNPEFF_AMINO_ACID_CHANGE=P446;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_25570061_25570314;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399380    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1535,126,0
18    25572837    rs1662733    G    A    663.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269141    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:697,54,0
18    25573308    rs1662734    C    T    599.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269141    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:632,48,0
18    25573622    rs2957286    G    C    2559.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269141    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2593,190,0
18    25585687    rs874314    G    A    550.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418492    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:583,45,0
18    25593931    rs1443453    A    C    458.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=22.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269141    GT:AD:DP:GQ:PL    1/1:0,20:20:48.10:491,48,0
18    25616451    rs1944294    A    T    5545.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2702;MQ=59.56;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=L21*;SNPEFF_CODON_CHANGE=tTg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_18_25616434_25616549;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399380    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5545,406,0
18    28581442    rs1313579    T    C    107.55    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=1.186;QD=9.78;ReadPosRankSum=-1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:6,5:11:99:138,0,218
18    28586964    rs1313586    A    G    169.97    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.526;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.667;QD=5.0;ReadPosRankSum=1.314;SNPEFF_AMINO_ACID_CHANGE=P599;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28586873_28587097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:24,10:34:99:200,0,830
18    28588537    rs1313587    C    T    704.67    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.21;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.15;QD=17.19;ReadPosRankSum=0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:18,23:41:99:735,0,558
18    28598866    rs5823777    CTG    C    281.31    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=50.4071;IndelType=D;MQ=60.67;MQ0=0;MQRankSum=-2.133;QD=17.58;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:7,9:16:99:320,0,224
18    28605715    rs202439    A    T    676.82    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.012;DB;DP=44;Dels=0.0;FS=7.593;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=2.482;QD=15.38;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:19,25:44:99:707,0,653
18    28609770    rs276940    C    T    74.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.37;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,104
18    28610887    rs276939    A    G    152.82    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.009;QD=8.04;ReadPosRankSum=-0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:13,6:19:99:183,0,474
18    28610901    rs79048641    G    GA    124.27    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.464;DB;DP=21;FS=0.0;HRun=6;HaplotypeScore=65.9434;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.117;QD=5.92;ReadPosRankSum=0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:15,6:21:99:163,0,396
18    28610988    rs276938    C    T    329.94    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=1.687;DB;DP=46;Dels=0.0;FS=1.173;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=7.17;ReadPosRankSum=-0.75;SNPEFF_AMINO_ACID_CHANGE=R102K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28610939_28611138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:31,15:46:99:360,0,939
18    28611061    rs276937    A    T    334.18    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=36;Dels=0.0;FS=2.999;HRun=0;HaplotypeScore=1.9944;MQ=59.48;MQ0=0;MQRankSum=0.593;QD=9.28;ReadPosRankSum=0.79;SNPEFF_AMINO_ACID_CHANGE=S78T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28610939_28611138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:23,13:36:99:364,0,667
18    28611139    rs276936    A    C    564.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=33.18;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000434452    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:597,45,0
18    28612229    rs2852003    G    T    468.78    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.854;DB;DP=29;Dels=0.0;FS=6.029;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.551;QD=16.16;ReadPosRankSum=-1.011;SNPEFF_AMINO_ACID_CHANGE=A28D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28612158_28612242;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360428    GT:AD:DP:GQ:PL    0/1:11,18:29:99:499,0,349
18    28649042    rs1893963    T    C    663.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=48;Dels=0.0;FS=1.117;HRun=0;HaplotypeScore=1.5317;MQ=59.03;MQ0=0;MQRankSum=-0.938;QD=13.82;ReadPosRankSum=-1.062;SNPEFF_AMINO_ACID_CHANGE=I542V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28648860_28649117;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438199    GT:AD:DP:GQ:PL    0/1:24,24:48:99:693,0,775
18    28649166    rs1893962    A    G    182.48    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.064;DB;DP=21;Dels=0.0;FS=4.191;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.181;QD=8.69;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251081    GT:AD:DP:GQ:PL    0/1:13,8:21:99:212,0,439
18    28659724    rs1658128    T    C    841.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251081    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:875,66,0
18    28666526    rs35717505    T    TTAA    4764.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=0;HaplotypeScore=196.4225;IndelType=I;MQ=55.95;MQ0=0;QD=68.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251081    GT:AD:DP:GQ:PL    1/1:3,67:70:99:4764,205,0
18    28671212    rs1790683    T    G    237.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251081    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
18    28711519    rs1789072    C    T    1021.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257197    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1054,78,0
18    28712737    rs36112658    CA    C    280.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=6;HaplotypeScore=24.1712;IndelType=D;MQ=60.0;MQ0=0;QD=28.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257197    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:323,30,0
18    28714372    rs1789036    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257197    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
18    28719674    rs1789043    A    G    588.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.248;QD=28.03;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257197    GT:AD:DP:GQ:PL    1/1:1,20:21:15.41:621,15,0
18    28898201    rs1834582    A    G    178.86    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.058;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.102;QD=7.78;ReadPosRankSum=-0.58;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_28898052_28898311;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:15,8:23:99:209,0,478
18    28898294    rs1426310    A    G    504.18    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.809;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9157;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=9.89;ReadPosRankSum=-1.12;SNPEFF_AMINO_ACID_CHANGE=M11V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28898052_28898311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:32,19:51:99:534,0,1013
18    28907096    rs765054    C    T    403.37    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.369;QD=23.73;ReadPosRankSum=-1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:5,12:17:99:433,0,155
18    28908090    rs2303465    G    A    282.04    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.066;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8663;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=12.82;ReadPosRankSum=-2.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:10,12:22:99:312,0,299
18    28912042    rs9949912    G    A    35.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
18    28913599    rs12967407    C    T    626.01    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.168;DB;DP=50;Dels=0.0;FS=10.441;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.03;QD=12.52;ReadPosRankSum=1.337;SNPEFF_AMINO_ACID_CHANGE=G244;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28913552_28913686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:30,20:50:99:656,0,892
18    28913811    rs2007149    T    C    292.78    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.085;DB;DP=23;Dels=0.0;FS=6.545;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.465;QD=12.73;ReadPosRankSum=-0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:10,13:23:99:323,0,350
18    28913929    rs5823800    TTC    T    1050.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.107;DB;DP=65;FS=10.884;HRun=0;HaplotypeScore=209.4301;IndelType=D;MQ=59.2;MQ0=0;MQRankSum=0.474;QD=15.91;ReadPosRankSum=0.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:33,33:65:99:1089,0,1417
18    28916230    rs74277377    G    GAT    284.66    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.968;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=50.0485;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=20.33;ReadPosRankSum=0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:8,6:14:99:324,0,349
18    28916290    rs6506917    G    A    264.84    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=40;Dels=0.0;FS=3.92;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.333;QD=6.62;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:29,11:40:99:295,0,902
18    28934374    rs78995670    A    G    969.32    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.288;DB;DP=83;Dels=0.0;FS=0.844;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.072;QD=11.68;ReadPosRankSum=0.641;SNPEFF_AMINO_ACID_CHANGE=I739V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28934260_28936992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:45,38:83:99:999,0,1421
18    28934681    rs3752095    A    T    1376.56    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.426;DB;DP=109;Dels=0.0;FS=6.321;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.456;QD=12.63;ReadPosRankSum=1.237;SNPEFF_AMINO_ACID_CHANGE=Y841F;SNPEFF_CODON_CHANGE=tAc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28934260_28936992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257192    GT:AD:DP:GQ:PL    0/1:58,51:109:99:1407,0,1582
18    28935375    rs8099566    C    T    592.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=37.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462981    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:625,48,0
18    28956904    rs36101975    C    T    279.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.498;QD=11.66;ReadPosRankSum=0.263;SNPEFF_AMINO_ACID_CHANGE=C10;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28956740_28956922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    0/1:14,10:24:99:310,0,442
18    28966518    rs1460597    G    C    295.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:328,24,0
18    28968371    rs16959856    G    A    1158.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=R86;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28968330_28968485;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1192,90,0
18    28968959    rs9956865    C    T    2073.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.75;SNPEFF_AMINO_ACID_CHANGE=S165;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28968837_28968981;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2106,157,0
18    28969008    rs16959863    C    T    1744.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1778,132,0
18    28986333    rs4799570    A    C    1746.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_AMINO_ACID_CHANGE=I644L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28986040_28986336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1780,129,0
18    28989232    rs1020838    C    T    360.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:394,30,0
18    28989674    rs1020839    C    T    370.39    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.7;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.479;QD=16.84;ReadPosRankSum=1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    0/1:6,16:22:99:400,0,183
18    28993183    rs12960081    A    G    1047.38    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.573;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=14.15;ReadPosRankSum=-1.293;SNPEFF_AMINO_ACID_CHANGE=P916;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28992791_28993879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    0/1:32,42:74:99:1077,0,1054
18    28993501    rs7234288    C    A    677.56    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=69;Dels=0.0;FS=3.314;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.848;QD=9.82;ReadPosRankSum=1.022;SNPEFF_AMINO_ACID_CHANGE=P1022;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_28992791_28993879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308128    GT:AD:DP:GQ:PL    0/1:43,26:69:99:708,0,1379
18    29027745    rs10084010    C    T    126.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=15;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.065;QD=8.4;ReadPosRankSum=-0.968;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257189    GT:AD:DP:GQ:PL    0/1:9,6:15:99:156,0,276
18    29027757    rs8085523    C    T    221.79    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-1.501;QD=11.67;ReadPosRankSum=-1.06;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257189    GT:AD:DP:GQ:PL    0/1:10,9:19:99:252,0,221
18    29027771    rs8085532    C    T    263.31    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.064;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.608;QD=13.17;ReadPosRankSum=0.152;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_29027758_29027888;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257189    GT:AD:DP:GQ:PL    0/1:11,9:20:99:293,0,339
18    29036316    rs3848485    A    G    343.29    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.304;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=11.07;ReadPosRankSum=1.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257189    GT:AD:DP:GQ:PL    0/1:19,12:31:99:373,0,631
18    29055957    rs1380866    A    G    1689.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.96;SNPEFF_AMINO_ACID_CHANGE=T912A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29055609_29058665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000257189    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1723,135,0
18    29098323    rs2276149    G    A    375.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:409,30,0
18    29098345    rs9807377    C    T    69.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.7;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,180
18    29101230    rs55657337    T    A    270.25    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.737;DB;DP=29;Dels=0.0;FS=4.295;HRun=2;HaplotypeScore=0.9997;MQ=54.58;MQ0=0;MQRankSum=1.013;QD=9.32;ReadPosRankSum=1.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:14,15:29:99:300,0,127
18    29104264    rs2848664    T    C    46.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.42;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:76,0,31
18    29104564    rs3737378    C    A    860.93    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.129;DB;DP=43;Dels=0.0;FS=1.251;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=20.02;ReadPosRankSum=-0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:18,25:43:99:891,0,590
18    29104698    rs2230233    C    T    1432.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.979;QD=34.1;ReadPosRankSum=1.27;SNPEFF_AMINO_ACID_CHANGE=N287;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29104666_29104851;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    1/1:2,40:42:69.58:1465,70,0
18    29104878    rs62095194    G    A    244.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.088;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.265;QD=13.6;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:9,9:18:99:275,0,310
18    29111364    rs12326068    G    A    107.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.94;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,170
18    29116462    rs2276150    T    C    43.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.86;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:73,0,32
18    29121488    rs2290128    C    T    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
18    29121521    rs2290129    G    C    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
18    29122799    rs2278792    G    A    398.61    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.366;DB;DP=26;Dels=0.0;FS=4.925;HRun=3;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.843;QD=15.33;ReadPosRankSum=-0.843;SNPEFF_AMINO_ACID_CHANGE=R773K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29122483_29122815;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:12,14:26:99:429,0,394
18    29125854    rs1042769    A    G    1511.77    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.107;DB;DP=105;Dels=0.0;FS=1.7;HRun=0;HaplotypeScore=1.5317;MQ=59.78;MQ0=0;MQRankSum=-0.442;QD=14.4;ReadPosRankSum=-1.805;SNPEFF_AMINO_ACID_CHANGE=T835;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29125684_29128813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    0/1:46,59:105:99:1542,0,1455
18    29126670    rs1791235    T    C    1565.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.61;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=V1107;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29125684_29128813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261590    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1599,123,0
18    29237765    rs1449086    T    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237019    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
18    29237860    rs1449087    C    T    896.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=56.2;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237019    GT:AD:DP:GQ:PL    1/1:0,25:25:72.23:929,72,0
18    29238076    rs72079716    CA    C    294.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.413;DB;DP=33;FS=0.0;HRun=14;HaplotypeScore=247.0954;IndelType=D;MQ=54.29;MQ0=0;MQRankSum=0.908;QD=8.92;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237019    GT:AD:DP:GQ:PL    1/1:14,17:33:31.57:336,32,0
18    29246207    rs9973109    A    C    807.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.543;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=1.169;QD=11.53;ReadPosRankSum=-0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237019    GT:AD:DP:GQ:PL    0/1:40,30:70:99:837,0,1146
18    29264182    rs1449081    G    A    664.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237019    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:697,54,0
18    29339619    rs62095460    G    A    46.32    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.632;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.59;MQ0=0;MQRankSum=0.326;QD=3.09;ReadPosRankSum=-0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCART2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535708    GT:AD:DP:GQ:PL    0/1:11,4:15:76.31:76,0,398
18    29339910    rs3859364    G    T    1349.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=30.8;MQ0=7;QD=25.95;SNPEFF_AMINO_ACID_CHANGE=L239I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29339731_29340624;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCART2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535708    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1382,117,0
18    29419462    rs7226615    C    A    256.41    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.567;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8909;MQ=59.03;MQ0=0;MQRankSum=-0.113;QD=10.68;ReadPosRankSum=-0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:11,13:24:99:286,0,307
18    29426552    rs34846731    A    C    442.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.742;QD=14.74;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:15,15:30:99:472,0,540
18    29426669    rs11660777    A    G    1518.40    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.597;DB;DP=102;Dels=0.0;FS=0.764;HRun=0;HaplotypeScore=1.6498;MQ=59.55;MQ0=0;MQRankSum=0.7;QD=14.89;ReadPosRankSum=-1.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:48,54:102:99:1548,0,1538
18    29426868    rs682279    A    T    320.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:354,27,0
18    29432278    rs7239098    A    C    220.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:253,18,0
18    29432304    rs11081719    C    G    117.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.467;QD=9.02;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:7,6:13:99:147,0,217
18    29432332    rs7239629    G    A    343.06    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=3.647;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.836;QD=17.15;ReadPosRankSum=-1.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:9,11:20:99:373,0,204
18    29432367    rs3841748    AC    A    642.43    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=4.883;DB;DP=40;FS=1.795;HRun=1;HaplotypeScore=146.6716;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=16.06;ReadPosRankSum=1.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:21,19:40:99:681,0,842
18    29432624    rs3737374    T    C    2473.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.998;DB;DP=189;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9732;MQ=59.78;MQ0=0;MQRankSum=-0.167;QD=13.02;ReadPosRankSum=-0.621;SNPEFF_AMINO_ACID_CHANGE=T1146A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29432558_29432626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:105,84:189:99:2503,0,3287
18    29437400    rs3810001    A    G    269.76    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.348;QD=26.98;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:1,9:10:12.14:300,0,12
18    29438021    rs35582028    C    CT    48.81    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=0.796;DB;DP=29;FS=0.0;HRun=14;HaplotypeScore=145.5542;IndelType=I;MQ=54.17;MQ0=0;MQRankSum=-0.919;QD=1.68;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:20,6:29:87.84:88,0,123
18    29444811    rs2291239    A    G    143.57    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.461;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=11.96;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:7,5:12:99:174,0,247
18    29446646    rs12326219    T    C    184.83    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=23.1;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:2,6:8:60.69:215,0,61
18    29447468    rs2291238    T    G    269.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DB;DP=27;Dels=0.0;FS=5.316;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.22;QD=9.98;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:15,12:27:99:299,0,514
18    29454644    rs2276145    A    G    513.93    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.628;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=19.03;ReadPosRankSum=-0.377;SNPEFF_AMINO_ACID_CHANGE=Y584;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29454443_29454667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:10,17:27:99:544,0,304
18    29454781    rs2276144    G    A    68.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.61;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:98,0,69
18    29477697    rs148636409    TA    T    57.78    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;FS=0.0;HRun=10;HaplotypeScore=28.4672;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=1.031;QD=5.25;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:6,5:11:96.81:97,0,160
18    29481078    rs3833187    G    GT    85    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=16;FS=0.0;HRun=10;HaplotypeScore=57.8682;IndelType=I;MQ=57.05;MQ0=0;MQRankSum=-0.38;QD=5.31;ReadPosRankSum=-1.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:11,5:16:99:124,0,136
18    29487596    rs4581778    T    A    113.17    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.065;QD=7.54;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:8,7:15:99:143,0,282
18    29488804    rs12326860    A    G    527.66    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.966;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.499;QD=9.59;ReadPosRankSum=0.026;SNPEFF_AMINO_ACID_CHANGE=H345;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29488717_29488973;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:35,20:55:99:558,0,1105
18    29493533    rs11659244    T    A    98.33    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.398;QD=8.94;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,259
18    29496218    rs62093869    C    T    284.23    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=19;Dels=0.0;FS=6.864;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.971;QD=14.96;ReadPosRankSum=-0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:9,10:19:99:314,0,282
18    29497573    rs6506948    A    G    4817.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.912;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=L137S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29497541_29497630;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    1/1:0,145:145:99:4817,367,0
18    29497721    rs145378523    TA    T    81.16    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=17;FS=0.0;HRun=10;HaplotypeScore=39.6446;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=4.77;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:11,6:17:99:120,0,163
18    29511502    rs148221292    GA    G    277.80    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=3.13;DB;DP=31;FS=2.251;HRun=7;HaplotypeScore=71.3256;IndelType=D;MQ=59.61;MQ0=0;MQRankSum=0.655;QD=8.96;ReadPosRankSum=0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:18,13:31:99:317,0,443
18    29511663    rs11081728    G    A    36.43    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=9.11;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283351    GT:AD:DP:GQ:PL    0/1:1,3:4:27.95:66,0,28
18    29617013    rs62093938    A    C    709.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.105;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.14;MQ0=0;MQRankSum=-0.009;QD=13.13;ReadPosRankSum=0.426;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217740    GT:AD:DP:GQ:PL    0/1:30,24:54:99:739,0,1029
18    29617255    rs9947278    T    G    879.43    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.033;DB;DP=82;Dels=0.0;FS=6.955;HRun=0;HaplotypeScore=3.6592;MQ=55.03;MQ0=0;MQRankSum=0.239;QD=10.72;ReadPosRankSum=0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF125;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217740    GT:AD:DP:GQ:PL    0/1:46,36:82:99:909,0,1236
18    29693522    rs16962700    A    C    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.36;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257190    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:71,0,70
18    29703353    rs17735362    G    T    352.89    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.091;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.71;MQ0=0;MQRankSum=-0.543;QD=19.6;ReadPosRankSum=1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257190    GT:AD:DP:GQ:PL    0/1:7,11:18:99:383,0,233
18    29708981    rs684359    G    A    364.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF138;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257190    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
18    29772408    rs66693026    C    T    280.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.473;QD=18.73;ReadPosRankSum=1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269202    GT:AD:DP:GQ:PL    0/1:6,9:15:99:311,0,202
18    29772976    rs2289543    A    C    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269202    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,98
18    29775226    rs3217505    TAC    T    110.65    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=42.3883;IndelType=D;MQ=60.98;MQ0=0;MQRankSum=0.198;QD=10.06;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269202    GT:AD:DP:GQ:PL    0/1:6,5:11:72.68:150,0,73
18    29790889    rs335519    G    A    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269202    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
18    29793526    rs335518    C    T    3285.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269202    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3285,244,0
18    29793708    rs335517    C    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269202    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
18    29795076    rs173032    T    C    4185.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=35.47;SNPEFF_AMINO_ACID_CHANGE=S537;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29795045_29795224;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269202    GT:AD:DP:GQ:PL    1/1:0,118:118:99:4186,304,0
18    29795101    rs233223    T    C    3752.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=59.79;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=S546P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_29795045_29795224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEP1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269202    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3753,283,0
18    29972774    rs3786309    T    C    229.87    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.371;DB;DP=26;Dels=0.0;FS=2.287;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.916;QD=8.84;ReadPosRankSum=-1.832;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269209    GT:AD:DP:GQ:PL    0/1:17,9:26:99:260,0,538
18    30050356    rs11664566    C    T    235.04    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=13;Dels=0.0;FS=2.92;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.085;QD=18.08;ReadPosRankSum=-0.254;SNPEFF_AMINO_ACID_CHANGE=K12;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_30050271_30050395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM59A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269209    GT:AD:DP:GQ:PL    0/1:3,10:13:51.12:265,0,51
18    30106370    rs8092624    T    C    118.99    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.251;QD=7.0;ReadPosRankSum=0.653;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC009835.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408694    GT:AD:DP:GQ:PL    0/1:11,6:17:99:149,0,406
18    30349691    rs17851892    C    T    456.97    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.379;DB;DP=49;Dels=0.0;FS=1.142;HRun=0;HaplotypeScore=0.9665;MQ=59.53;MQ0=0;MQRankSum=-0.878;QD=9.33;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=P288;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_30349608_30350597;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358095    GT:AD:DP:GQ:PL    0/1:29,19:49:99:487,0,754
18    30350165    rs61737324    G    A    1027.34    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.779;DB;DP=54;Dels=0.0;FS=4.173;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.195;QD=19.02;ReadPosRankSum=-0.657;SNPEFF_AMINO_ACID_CHANGE=C130;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_30349608_30350597;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358095    GT:AD:DP:GQ:PL    0/1:21,33:54:99:1057,0,619
18    30352057    .    GCGCCGGCC    G    204.18    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=47.1018;IndelType=D;MQ=49.64;MQ0=0;QD=40.84;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_18_30352017_30352250;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC012123.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000426194    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:246,12,0
18    30517845    .    G    C    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.11;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402325    GT:AD:DP:GQ:PL    0/1:2,2:4:70.42:70,0,72
18    30672631    rs1995096    G    A    1543.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=39.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300227    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1576,114,0
18    30804756    rs466113    C    T    1148.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_AMINO_ACID_CHANGE=D601N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_30804739_30804900;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300227    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1181,87,0
18    30846594    rs4319841    G    A    113.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=28.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300227    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
18    30846895    rs9965081    A    T    1621.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=31.18;SNPEFF_AMINO_ACID_CHANGE=V465E;SNPEFF_CODON_CHANGE=gTa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_30846880_30847016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300227    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1654,129,0
18    30950168    rs9965655    T    C    591.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300227    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:624,48,0
18    30969567    rs76952832    G    T    916.68    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.669;DB;DP=81;Dels=0.0;FS=0.858;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.763;QD=11.32;ReadPosRankSum=-0.649;SNPEFF_AMINO_ACID_CHANGE=L49I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_30969504_30969593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300227    GT:AD:DP:GQ:PL    0/1:44,37:81:99:947,0,1378
18    30976968    rs4447495    C    G    125.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300227    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
18    30977255    rs6507018    G    A    250.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300227    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
18    31225030    rs4799705    G    T    66.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.14;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    0/1:3,3:6:88.52:97,0,89
18    31241497    rs9304126    C    G    139.30    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.92;QD=17.41;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    0/1:3,5:8:99:169,0,103
18    31263320    rs8086318    G    A    243.46    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.837;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=1.429;QD=12.81;ReadPosRankSum=0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    0/1:9,10:19:99:273,0,246
18    31312106    rs10432168    T    C    1490.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1523,123,0
18    31312148    rs7504560    A    G    459.05    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.744;QD=32.79;ReadPosRankSum=1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    1/1:1,13:14:39.12:492,39,0
18    31314196    rs34501189    A    G    1323.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1356,102,0
18    31314389    rs34896948    A    T    854.89    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.199;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9064;MQ=59.7;MQ0=0;MQRankSum=0.716;QD=10.96;ReadPosRankSum=0.904;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    0/1:48,30:78:99:885,0,1576
18    31314435    rs35547151    C    T    333.85    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.901;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.5;MQ0=0;MQRankSum=1.015;QD=7.26;ReadPosRankSum=-1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    0/1:32,14:46:99:364,0,1052
18    31318256    rs1845386    G    C    160.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:193,15,0
18    31318336    rs1845385    T    C    810.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    1/1:1,22:23:63.21:843,63,0
18    31318376    rs1493910    A    G    1707.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1741,129,0
18    31320229    rs2282632    A    G    3650.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=35.45;SNPEFF_AMINO_ACID_CHANGE=N954S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_31318451_31320407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    1/1:1,102:103:99:3651,277,0
18    31324051    rs149577667    C    T    1822.47    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=3.184;DB;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.056;QD=14.24;ReadPosRankSum=-1.881;SNPEFF_AMINO_ACID_CHANGE=V1413;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_31322852_31327377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    0/1:63,65:128:99:1852,0,1882
18    31324934    rs7232237    A    G    2042.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8136;MQ=59.7;MQ0=0;QD=32.94;SNPEFF_AMINO_ACID_CHANGE=M1708V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_31322852_31327377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269197    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2075,156,0
18    31599259    rs10502615    T    C    571.23    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=48;Dels=0.0;FS=1.436;HRun=1;HaplotypeScore=1.8947;MQ=59.61;MQ0=0;MQRankSum=-1.792;QD=11.9;ReadPosRankSum=0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261592    GT:AD:DP:GQ:PL    0/1:29,19:48:99:601,0,880
18    32335915    rs6650658    A    G    130.18    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=16.27;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269190    GT:AD:DP:GQ:PL    0/1:3,5:8:99:160,0,101
18    32386125    rs4458079    T    C    225.87    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.52;QD=20.53;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269190    GT:AD:DP:GQ:PL    0/1:4,7:11:99:256,0,135
18    32455193    rs192561043    G    T    336.32    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.285;DB;DP=33;Dels=0.0;FS=3.876;HRun=2;HaplotypeScore=4.3647;MQ=55.05;MQ0=0;MQRankSum=-0.153;QD=10.19;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269190    GT:AD:DP:GQ:PL    0/1:19,14:33:99:366,0,489
18    32459704    rs2288085    A    G    362.79    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.534;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.29;QD=14.51;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269190    GT:AD:DP:GQ:PL    0/1:12,13:25:99:393,0,321
18    32650341    rs3744923    A    G    667.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPRE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300249    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:701,51,0
18    32677633    rs17669564    G    A    146.52    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPRE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300249    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,140
18    32711965    rs3837890    G    GT    304.55    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.8;DB;DP=24;FS=0.0;HRun=8;HaplotypeScore=52.6255;IndelType=I;MQ=58.98;MQ0=0;MQRankSum=0.375;QD=12.69;ReadPosRankSum=-1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPRE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300249    GT:AD:DP:GQ:PL    0/1:12,12:24:99:344,0,257
18    32720189    rs3786314    A    G    221.33    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.599;DB;DP=12;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=18.44;ReadPosRankSum=1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPRE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300249    GT:AD:DP:GQ:PL    0/1:4,8:12:99:251,0,133
18    32720315    rs140836474    G    A    203.53    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=21;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=9.69;ReadPosRankSum=0.038;SNPEFF_AMINO_ACID_CHANGE=P269;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_32720259_32721742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPRE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538170    GT:AD:DP:GQ:PL    0/1:11,10:21:99:234,0,350
18    32822382    rs4799374    G    T    2030    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=34.41;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_18_32822355_32822848;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF397;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261333    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2063,150,0
18    32823369    rs138222337    T    C    344.18    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.337;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=15.64;ReadPosRankSum=-0.801;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF397;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261333    GT:AD:DP:GQ:PL    0/1:9,13:22:99:374,0,314
18    32826088    rs2278463    A    G    616.62    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.874;DB;DP=49;Dels=0.0;FS=1.087;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.171;QD=12.58;ReadPosRankSum=-0.492;SNPEFF_AMINO_ACID_CHANGE=R473;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_32825226_32827153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF397;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330501    GT:AD:DP:GQ:PL    0/1:27,22:49:99:647,0,850
18    32834095    rs2289037    T    C    675.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.046;DB;DP=52;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=2.9496;MQ=60.0;MQ0=0;MQRankSum=0.563;QD=12.74;ReadPosRankSum=-1.979;SNPEFF_AMINO_ACID_CHANGE=T203;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_32833423_32834285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360932    GT:AD:DP:GQ:PL    0/1:26,26:52:99:705,0,764
18    32834186    rs2249769    T    G    544.93    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.62;MQ0=0;MQRankSum=1.125;QD=8.93;ReadPosRankSum=0.213;SNPEFF_AMINO_ACID_CHANGE=Q173P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_32833423_32834285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN30;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360932    GT:AD:DP:GQ:PL    0/1:38,23:61:99:575,0,1123
18    32886528    rs137972897    T    TAGTC    932.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=40.6301;IndelType=I;MQ=50.27;MQ0=0;QD=71.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF271;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399070    GT:AD:DP:GQ:PL    1/1:2,9:13:39.13:974,39,0
18    32887540    rs62096521    C    T    417.06    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=2.674;DB;DP=46;Dels=0.0;FS=1.245;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.743;QD=9.07;ReadPosRankSum=-0.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF271;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399070    GT:AD:DP:GQ:PL    0/1:31,15:46:99:447,0,918
18    32887890    .    C    T    67.81    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DP=8;Dels=0.0;FS=3.332;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=8.48;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF271;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465539    GT:AD:DP:GQ:PL    0/1:5,3:8:97.81:98,0,166
18    32887914    rs1131709    A    G    119.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=14.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF271;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465539    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:152,12,0
18    32887933    rs9963614    A    G    135.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF271;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465539    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
18    32917644    rs2032729    T    C    1568.50    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.981;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.22;MQ0=0;MQRankSum=-0.576;QD=14.66;ReadPosRankSum=-0.185;SNPEFF_AMINO_ACID_CHANGE=N220S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_32912176_32917734;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261332    GT:AD:DP:GQ:PL    0/1:51,55:106:99:1598,0,1509
18    32917780    rs5823970    G    GA    1849.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.0;HRun=4;HaplotypeScore=204.3548;IndelType=I;MQ=60.98;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261332    GT:AD:DP:GQ:PL    1/1:7,48:55:99:1892,141,0
18    32919217    rs2978357    A    C    535.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261332    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:568,42,0
18    33048554    rs3088182    C    T    604.87    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.235;DB;DP=49;Dels=0.0;FS=1.115;HRun=2;HaplotypeScore=2.6562;MQ=57.61;MQ0=0;MQRankSum=1.963;QD=12.34;ReadPosRankSum=-1.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283410    GT:AD:DP:GQ:PL    0/1:27,22:49:99:635,0,757
18    33077660    rs189576    A    G    72.76    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=10.39;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INO80C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283410    GT:AD:DP:GQ:PL    0/1:2,5:7:69.36:103,0,69
18    33552986    rs75299916    A    G    213.46    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.067;QD=23.72;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269194    GT:AD:DP:GQ:PL    0/1:2,7:9:46.06:243,0,46
18    33554775    rs4799831    A    G    294.52    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.641;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.157;QD=10.16;ReadPosRankSum=-1.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269194    GT:AD:DP:GQ:PL    0/1:18,11:29:99:325,0,648
18    33557466    rs2276314    A    G    1043.75    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.655;DB;DP=81;Dels=0.0;FS=1.813;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=-0.894;QD=12.89;ReadPosRankSum=-0.79;SNPEFF_AMINO_ACID_CHANGE=T132A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33557373_33557563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333234    GT:AD:DP:GQ:PL    0/1:38,43:81:99:1074,0,1152
18    33573400    rs16967317    A    G    124.63    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.93;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPRD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337059    GT:AD:DP:GQ:PL    0/1:1,4:5:19.30:155,0,19
18    33605441    rs77141393    A    G    59.42    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=4.57;ReadPosRankSum=-0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPRD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319040    GT:AD:DP:GQ:PL    0/1:9,4:13:89.41:89,0,306
18    33613595    rs3737474    T    C    573.78    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.373;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.168;QD=20.49;ReadPosRankSum=-0.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPRD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319040    GT:AD:DP:GQ:PL    0/1:10,18:28:99:604,0,314
18    33647254    rs1789517    A    C    183.81    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=26.26;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=R38;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33647217_33647519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPRD1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319040    GT:AD:DP:GQ:PL    0/1:1,6:7:20.70:214,0,21
18    33692654    rs1789514    T    C    206.52    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=13.77;ReadPosRankSum=0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269187    GT:AD:DP:GQ:PL    0/1:8,7:15:99:237,0,275
18    33694120    rs1050631    G    A    783.20    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=1.352;QD=17.03;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=L320;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33694060_33694437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440549    GT:AD:DP:GQ:PL    0/1:22,24:46:99:813,0,641
18    33694542    rs1789512    T    C    86.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=14.35;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269187    GT:AD:DP:GQ:PL    0/1:2,4:6:63.02:116,0,63
18    33696772    rs1789504    A    C    168.51    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.54;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.423;QD=10.53;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269187    GT:AD:DP:GQ:PL    0/1:9,7:16:99:199,0,321
18    33696865    rs1789503    T    G    66.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.3;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269187    GT:AD:DP:GQ:PL    0/1:2,3:5:69.83:97,0,70
18    33706614    rs1789528    C    G    798.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.03;SNPEFF_AMINO_ACID_CHANGE=E119D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33706182_33706979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269187    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:832,63,0
18    33707164    rs1107840    A    C    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC39A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269187    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
18    33709762    rs1632169    G    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543127    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:79,6,0
18    33713287    rs1785905    T    A    230.54    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=46;Dels=0.0;FS=5.349;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=5.01;ReadPosRankSum=-0.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350494    GT:AD:DP:GQ:PL    0/1:34,12:46:99:261,0,1006
18    33718326    rs1785934    A    C    737.63    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=3.508;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2611;MQ=59.53;MQ0=0;MQRankSum=0.702;QD=15.05;ReadPosRankSum=-0.144;SNPEFF_AMINO_ACID_CHANGE=T128P;SNPEFF_CODON_CHANGE=Aca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33718233_33718389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350494    GT:AD:DP:GQ:PL    0/1:23,25:49:99:768,0,614
18    33722107    rs1785931    T    C    186.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=20.77;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535488    GT:AD:DP:GQ:PL    0/1:3,6:9:76.64:217,0,77
18    33722121    rs79184296    T    C    52.63    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=4.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535488    GT:AD:DP:GQ:PL    0/1:8,3:11:82.62:83,0,293
18    33722122    rs80146684    A    G    38.30    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=3.19;ReadPosRankSum=0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535488    GT:AD:DP:GQ:PL    0/1:9,3:12:68.30:68,0,308
18    33722425    rs1789549    A    G    117.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=14.73;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535488    GT:AD:DP:GQ:PL    0/1:3,5:8:99:148,0,102
18    33725705    rs1789547    C    T    41.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.46;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536373    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:72,0,66
18    33725874    rs1789546    T    G    1584.14    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=0.63;DB;DP=91;Dels=0.0;FS=1.063;HRun=1;HaplotypeScore=0.9894;MQ=59.29;MQ0=0;MQRankSum=1.371;QD=17.41;ReadPosRankSum=-0.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536373    GT:AD:DP:GQ:PL    0/1:36,55:91:99:1614,0,1109
18    33725931    rs1785928    G    A    2565.51    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=1.51;DB;DP=155;Dels=0.0;FS=7.188;HRun=1;HaplotypeScore=0.5784;MQ=59.7;MQ0=0;MQRankSum=-0.002;QD=16.55;ReadPosRankSum=-0.1;SNPEFF_AMINO_ACID_CHANGE=V235M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33725911_33726011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423854    GT:AD:DP:GQ:PL    0/1:67,88:155:99:2596,0,1952
18    33726447    rs1785927    C    G    202.21    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=11.89;ReadPosRankSum=1.903;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536373    GT:AD:DP:GQ:PL    0/1:10,7:17:99:232,0,360
18    33736779    rs1785922    A    G    86.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350494    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
18    33744677    rs684890    T    C    273.09    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.635;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.41;MQ0=0;MQRankSum=1.588;QD=17.07;ReadPosRankSum=-1.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540799    GT:AD:DP:GQ:PL    0/1:7,9:16:99:303,0,236
18    33744702    rs17649067    T    C    136.49    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=1.0;QD=11.37;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540799    GT:AD:DP:GQ:PL    0/1:7,5:12:99:166,0,223
18    33744766    rs681757    T    G    94.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540799    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
18    33749871    rs607962    C    T    166.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541294    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
18    33750046    rs8299    C    T    164.31    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=0.451;DB;DP=27;Dels=0.0;FS=4.039;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=0.08;QD=6.09;ReadPosRankSum=0.345;SNPEFF_AMINO_ACID_CHANGE=C629;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33750026_33750159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423854    GT:AD:DP:GQ:PL    0/1:19,8:27:99:194,0,559
18    33778607    rs596644    C    A    1481.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1514,114,0
18    33779821    rs646424    C    A    1338.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=38.25;SNPEFF_AMINO_ACID_CHANGE=R159;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33779646_33780287;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1372,99,0
18    33779855    rs623053    C    T    1224.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.39;SNPEFF_AMINO_ACID_CHANGE=T170I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33779646_33780287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,39:39:96.30:1257,96,0
18    33779896    rs540967    A    G    1519.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=S184G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33779646_33780287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1553,117,0
18    33780020    rs623558    A    G    1670.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=H225R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33779646_33780287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1704,132,0
18    33783030    rs579596    T    C    329.48    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=29;Dels=0.0;FS=9.04;HRun=0;HaplotypeScore=1.7552;MQ=59.2;MQ0=0;MQRankSum=0.282;QD=11.36;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    0/1:17,12:29:99:359,0,607
18    33784959    rs10685658    C    CAAAA    718.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=20;HaplotypeScore=318.1306;IndelType=I;MQ=40.21;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:9,7:21:55.89:761,56,0
18    33785093    rs678560    G    A    1942.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.52;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=V358M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33785040_33785239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1975,153,0
18    33785185    rs667667    A    G    1785.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.79;MQ0=0;QD=29.75;SNPEFF_AMINO_ACID_CHANGE=P388;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_33785040_33785239;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1818,147,0
18    33785304    rs667195    T    C    639.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:673,48,0
18    33793511    rs687387    T    C    470.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,17:17:45.08:503,45,0
18    33795425    rs631108    G    A    301    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:334,24,0
18    33848663    rs111317566    A    ATACAT    2888.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=129.9587;IndelType=I;MQ=48.77;MQ0=0;QD=84.94;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOCOS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261326    GT:AD:DP:GQ:PL    1/1:8,26:34:96.33:2930,96,0
18    34081849    rs17565834    A    G    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
18    34092635    rs10153411    T    A    75.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=15.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:108,9,0
18    34174958    rs8087763    T    C    94.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
18    34182800    rs34287129    A    G    130.09    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=8.13;ReadPosRankSum=1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    0/1:11,5:16:99:160,0,396
18    34205385    rs2644253    A    G    1422.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1456,105,0
18    34261190    rs687318    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
18    34261559    rs542241    T    A    618.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5661;MQ=58.13;MQ0=0;QD=24.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,25:25:63.12:651,63,0
18    34261581    rs34100890    AG    A    524.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=108.6566;IndelType=D;MQ=57.05;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:567,45,0
18    34273039    rs479570    T    C    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
18    34273440    rs483351    C    T    467.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:500,39,0
18    34273486    rs12964503    C    T    109.40    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=13.67;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257209    GT:AD:DP:GQ:PL    0/1:3,5:8:99:139,0,103
18    34298366    .    A    C    85.74    HaplotypeScoreFilter13    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DP=12;Dels=0.0;FS=3.522;HRun=5;HaplotypeScore=14.437;MQ=49.5;MQ0=0;MQRankSum=-2.793;QD=7.15;ReadPosRankSum=1.309;SNPEFF_AMINO_ACID_CHANGE=P822;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_34297795_34298678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445677    GT:AD:DP:GQ:PL    0/1:7,5:12:99:116,0,142
18    34298372    .    T    C    51.16    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DP=15;Dels=0.0;FS=3.282;HRun=5;HaplotypeScore=0.734;MQ=51.77;MQ0=0;MQRankSum=-2.776;QD=3.41;ReadPosRankSum=1.743;SNPEFF_AMINO_ACID_CHANGE=P824;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_34297795_34298678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FHOD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445677    GT:AD:DP:GQ:PL    0/1:8,7:15:81.15:81,0,238
18    34539578    rs3744904    A    G    169.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1328;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280020    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
18    34801866    rs3747897    A    G    171.41    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=10.71;ReadPosRankSum=1.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1328;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280020    GT:AD:DP:GQ:PL    0/1:9,7:16:99:201,0,315
18    34850846    rs1443638    G    A    333.38    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=17;Dels=0.0;FS=4.523;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.754;QD=19.61;ReadPosRankSum=1.156;SNPEFF_AMINO_ACID_CHANGE=R211C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_34850731_34850880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361683    GT:AD:DP:GQ:PL    0/1:6,11:17:99:363,0,187
18    34852895    rs2241944    C    T    70.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.07;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334919    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,131
18    34854121    rs1786068    A    C    47.46    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.185;QD=3.96;ReadPosRankSum=-0.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334919    GT:AD:DP:GQ:PL    0/1:9,3:12:77.46:77,0,339
18    34854129    rs1662914    A    G    72.63    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.849;QD=5.59;ReadPosRankSum=-1.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334919    GT:AD:DP:GQ:PL    0/1:9,4:13:99:103,0,332
18    35065396    rs4799451    T    C    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334919    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
18    35145122    rs11082011    C    T    148.92    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.27;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334919    GT:AD:DP:GQ:PL    0/1:2,5:7:56.04:179,0,56
18    35145660    .    T    TCTCG    678.09    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=77.9557;IndelType=I;MQ=58.32;MQ0=0;QD=30.82;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_35145319_35146000;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334919    GT:AD:DP:GQ:PL    1/1:11,11:22:30.10:720,30,0
18    36915255    rs4800091    C    T    609.03    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.758;DB;DP=43;Dels=0.0;FS=2.673;HRun=0;HaplotypeScore=0.734;MQ=56.79;MQ0=0;MQRankSum=-0.038;QD=14.16;ReadPosRankSum=0.088;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC011139.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321566    GT:AD:DP:GQ:PL    0/1:23,20:43:99:639,0,635
18    40323383    rs75711569    T    G    172.06    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8675;MQ=57.87;MQ0=0;MQRankSum=0.211;QD=7.82;ReadPosRankSum=-0.07;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326695    GT:AD:DP:GQ:PL    0/1:15,7:22:99:202,0,541
18    40323497    rs1804730    G    T    1125.15    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.326;DB;DP=79;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.3884;MQ=59.71;MQ0=0;MQRankSum=-0.349;QD=14.24;ReadPosRankSum=0.26;SNPEFF_AMINO_ACID_CHANGE=L205;SNPEFF_CODON_CHANGE=ctC/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_40323192_40323685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326695    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1155,0,1207
18    40500910    rs12966146    T    C    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282028    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:69,6,0
18    40503349    rs1541294    G    C    309.93    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.725;QD=14.76;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282028    GT:AD:DP:GQ:PL    0/1:10,11:21:99:340,0,335
18    40503735    rs10633642    GA    G    93.08    QDFilter2    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.366;DB;DP=160;DS;FS=5.548;HRun=15;HaplotypeScore=979.1616;IndelType=D;MQ=57.86;MQ0=0;MQRankSum=0.728;QD=0.58;ReadPosRankSum=1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282028    GT:AD:DP:GQ:PL    0/1:126,24:160:99:132,0,1906
18    40613840    rs12954451    A    G    361.88    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=1.796;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.268;QD=11.67;ReadPosRankSum=-0.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282028    GT:AD:DP:GQ:PL    0/1:11,20:31:99:392,0,337
18    41559268    rs7230555    T    G    111.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
18    41559321    rs7229587    C    G    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
18    42529996    rs11082414    G    C    1720.60    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=2.823;DB;DP=125;Dels=0.0;FS=1.463;HRun=3;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;MQRankSum=-0.53;QD=13.76;ReadPosRankSum=0.307;SNPEFF_AMINO_ACID_CHANGE=V231L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_42529846_42533305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282030    GT:AD:DP:GQ:PL    0/1:57,68:125:99:1751,0,1476
18    42533130    rs8096662    A    G    1034.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=54.28;MQ0=0;QD=27.21;SNPEFF_AMINO_ACID_CHANGE=S1275;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_42529846_42533305;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282030    GT:AD:DP:GQ:PL    1/1:0,37:38:87.23:1067,87,0
18    43204572    .    C    A    750.51    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.422;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.807;QD=17.06;ReadPosRankSum=0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    0/1:17,27:44:99:781,0,569
18    43206985    rs1484873    A    G    1556.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=I132V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43206923_43207112;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1590,123,0
18    43221341    rs7233416    T    C    1608.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1641,126,0
18    43243679    rs8092227    A    G    463.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:496,42,0
18    43245986    rs7234198    T    G    315.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:348,27,0
18    43246156    rs9960464    G    A    2151.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=35.87;SNPEFF_AMINO_ACID_CHANGE=R510Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43246102_43246184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2185,160,0
18    43246329    rs2170972    G    T    208.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
18    43246779    rs2170973    C    T    453.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:486,36,0
18    43247001    rs2156609    C    G    1850.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=V553;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43246900_43247059;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1884,135,0
18    43247784    rs9964193    C    T    1828.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1862,141,0
18    43248212    rs3737475    C    T    644.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=28.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,22:23:54.16:678,54,0
18    43248504    rs6507631    T    C    428.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.51;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.102;QD=25.22;ReadPosRankSum=-0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:1,16:17:2.80:459,3,0
18    43248509    rs10451385    T    C    326.78    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.737;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.935;QD=25.14;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    0/1:1,12:13:1.55:355,0,2
18    43252786    rs1531926    A    G    891.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,31:31:75.21:925,75,0
18    43253100    rs1000501    C    T    549.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=27.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,20:20:48.13:583,48,0
18    43262359    rs3745009    G    A    5947.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=185;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7565;MQ=59.75;MQ0=0;QD=32.15;SNPEFF_AMINO_ACID_CHANGE=A880T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43262284_43263072;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:1,183:185:99:5948,466,0
18    43262501    rs3745008    C    T    1582.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.873;MQ=60.0;MQ0=0;MQRankSum=-1.216;QD=33.67;ReadPosRankSum=0.332;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1616,104,0
18    43262532    rs3745007    C    A    1152.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.43;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255226    GT:AD:DP:GQ:PL    1/1:0,30:30:87.29:1186,87,0
18    43310187    rs8090908    A    G    72.59    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=9.07;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    0/1:5,3:8:99:103,0,176
18    43310845    rs3819178    G    C    224.25    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.663;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.398;QD=18.69;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    0/1:5,7:12:99:254,0,100
18    43310851    rs12963324    G    A    94.01    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=8.55;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    0/1:7,4:11:99:124,0,252
18    43314401    rs35812340    G    GA    972.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139;DB;DP=39;FS=0.0;HRun=10;HaplotypeScore=90.7984;IndelType=I;MQ=61.21;MQ0=0;MQRankSum=1.04;QD=24.94;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    1/1:7,32:39:77.95:1015,78,0
18    43316270    rs692899    T    C    106.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.16;MQ0=0;MQRankSum=1.453;QD=10.66;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    0/1:5,5:10:99:137,0,164
18    43316538    rs2298718    A    G    320.33    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=40;Dels=0.0;FS=1.342;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.837;QD=8.01;ReadPosRankSum=-1.506;SNPEFF_AMINO_ACID_CHANGE=P196;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43316421_43316613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    0/1:28,12:40:99:350,0,918
18    43319060    rs473429    T    C    669.40    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=-1.427;QD=13.13;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    0/1:26,25:51:99:699,0,900
18    43319274    rs17675299    G    A    671.42    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.383;DB;DP=37;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.414;QD=18.15;ReadPosRankSum=1.058;SNPEFF_AMINO_ACID_CHANGE=A138;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43319128_43319275;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535474    GT:AD:DP:GQ:PL    0/1:16,21:37:99:701,0,550
18    43319359    rs531281    C    T    665.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:698,54,0
18    43319519    rs1058396    G    A    708.60    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=56;Dels=0.0;FS=2.334;HRun=1;HaplotypeScore=0.5784;MQ=58.76;MQ0=0;MQRankSum=-0.355;QD=12.65;ReadPosRankSum=1.532;SNPEFF_AMINO_ACID_CHANGE=D148N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43319493_43319627;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535474    GT:AD:DP:GQ:PL    0/1:30,26:56:99:739,0,862
18    43328295    rs474270    G    A    737.67    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=2.394;DB;DP=54;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.301;QD=13.66;ReadPosRankSum=-0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC14A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321925    GT:AD:DP:GQ:PL    0/1:25,29:54:99:768,0,803
18    43422036    rs12960501    G    A    136.01    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=2.817;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=11.33;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389474    GT:AD:DP:GQ:PL    0/1:7,5:12:99:166,0,232
18    43435738    rs514001    A    C    473.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308403    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:507,39,0
18    43438156    rs567801    C    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
18    43438161    rs34455748    G    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:73,0,34
18    43445566    .    G    A    972.42    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=4.153;DP=57;Dels=0.0;FS=7.948;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=1.286;QD=17.06;ReadPosRankSum=-0.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    0/1:25,32:57:99:1002,0,668
18    43445655    .    C    T    1140.99    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.763;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=54.57;MQ0=0;MQRankSum=0.661;QD=14.44;ReadPosRankSum=-0.484;SNPEFF_AMINO_ACID_CHANGE=G1106R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43445580_43445724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308403    GT:AD:DP:GQ:PL    0/1:38,40:79:99:1171,0,1114
18    43446734    rs3826633    T    C    4196.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=59.22;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    1/1:0,118:119:99:4196,316,0
18    43450753    rs10652366    TA    T    119.35    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.95;DB;DP=30;FS=0.0;HRun=17;HaplotypeScore=176.7667;IndelType=D;MQ=54.72;MQ0=0;MQRankSum=0.727;QD=3.98;ReadPosRankSum=-0.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    0/1:8,14:30:21.32:158,0,21
18    43458585    rs7228722    C    T    133.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
18    43470134    rs72918326    C    T    75.13    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.78;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:105,0,28
18    43487885    rs11336875    TA    T    49.17    QDFilter2    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.004;DB;DP=71;FS=0.0;HRun=19;HaplotypeScore=541.4051;IndelType=D;MQ=45.55;MQ0=0;MQRankSum=0.274;QD=0.69;ReadPosRankSum=1.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    0/1:26,19:71:1.27:87,0,1
18    43492121    rs67738770    CAGAG    C    493.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=46.9235;IndelType=D;MQ=58.63;MQ0=0;QD=54.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:535,27,0
18    43496508    rs72918350    G    A    507.90    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=28;Dels=0.0;FS=11.508;HRun=0;HaplotypeScore=1.7356;MQ=59.17;MQ0=0;MQRankSum=-0.283;QD=18.14;ReadPosRankSum=-1.62;SNPEFF_AMINO_ACID_CHANGE=S1093;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43496403_43496547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    0/1:10,18:28:99:538,0,281
18    43497710    rs3744998    A    G    2644.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_AMINO_ACID_CHANGE=V1058A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_43497644_43497784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2678,199,0
18    43502190    rs1075906    G    T    504.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:537,42,0
18    43505558    rs4476262    C    G    368.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:402,33,0
18    43547127    rs35074732    TG    T    196.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=5;HaplotypeScore=20.1002;IndelType=D;MQ=60.0;MQ0=0;QD=28.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282041    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:238,21,0
18    43833701    rs34068795    T    TCTG    3984.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.0;HRun=0;HaplotypeScore=167.447;IndelType=I;MQ=56.01;MQ0=0;QD=65.31;SNPEFF_AMINO_ACID_CHANGE=S252SA;SNPEFF_CODON_CHANGE=tct/tCTGct;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_18_43833663_43833786;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321319    GT:AD:DP:GQ:PL    1/1:3,55:61:99:3984,181,0
18    43914438    rs8084936    A    C    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.57;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269439    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:64,0,70
18    44065065    rs146200756    G    A    913.32    PASS    AB=0.347;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=49;Dels=0.0;FS=4.651;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=0.492;QD=18.64;ReadPosRankSum=-1.607;SNPEFF_AMINO_ACID_CHANGE=N1755;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_44064982_44065114;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398722    GT:AD:DP:GQ:PL    0/1:17,32:49:99:943,0,501
18    44109033    rs1450425    T    C    165.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536111    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
18    44114473    rs436433    T    C    879.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300591    GT:AD:DP:GQ:PL    1/1:0,30:30:75.22:913,75,0
18    44114580    rs9967253    C    T    165.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300591    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
18    44121681    rs150994738    G    A    328.43    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.761;QD=23.46;ReadPosRankSum=0.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420097    GT:AD:DP:GQ:PL    0/1:3,11:14:73.87:358,0,74
18    44122010    rs10775482    T    C    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419859    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
18    44122540    rs2365336    C    G    83.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419859    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
18    44126909    rs1893566    T    C    917.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=28.67;SNPEFF_AMINO_ACID_CHANGE=R1155G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_44126858_44127021;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536736    GT:AD:DP:GQ:PL    1/1:0,32:32:78.19:950,78,0
18    44135027    rs732108    A    G    465.10    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.238;DB;DP=30;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.904;QD=15.5;ReadPosRankSum=-1.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300591    GT:AD:DP:GQ:PL    0/1:11,19:30:99:495,0,349
18    44135050    rs732109    G    A    591    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.032;DB;DP=36;Dels=0.0;FS=1.357;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.898;QD=16.42;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300591    GT:AD:DP:GQ:PL    0/1:15,21:36:99:621,0,450
18    44135143    rs11665444    T    C    307.30    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.628;DB;DP=23;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.147;QD=13.36;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_18_44135088_44135334;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000420097    GT:AD:DP:GQ:PL    0/1:10,13:23:99:337,0,355
18    44137227    rs139052361    C    T    397.02    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6587;MQ=60.0;MQ0=0;MQRankSum=1.52;QD=13.69;ReadPosRankSum=0.875;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300591    GT:AD:DP:GQ:PL    0/1:15,14:29:99:427,0,442
18    44143153    rs36086089    C    T    188.83    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.553;DB;DP=26;Dels=0.0;FS=4.043;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.903;QD=7.26;ReadPosRankSum=-1.252;SNPEFF_AMINO_ACID_CHANGE=V547M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_44143028_44143188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335730    GT:AD:DP:GQ:PL    0/1:18,8:26:99:219,0,594
18    44149256    rs58458584    T    G    75.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.51;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335730    GT:AD:DP:GQ:PL    0/1:3,3:6:97.15:105,0,97
18    44149703    rs1824682    T    C    233.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.45;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335730    GT:AD:DP:GQ:PL    0/1:3,9:12:89.13:263,0,89
18    44173449    rs328145    A    C    1894.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335730    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1928,150,0
18    44174553    rs328144    C    T    253.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335730    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
18    44228959    rs328179    A    G    73.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LOXHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536736    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:106,9,0
18    44268611    rs328119    G    T    133.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315087    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
18    44272034    rs533027    A    C    331.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315087    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
18    44424105    rs35650924    G    GA    1234.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=11;HaplotypeScore=135.0674;IndelType=I;MQ=60.32;MQ0=0;QD=22.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262161    GT:AD:DP:GQ:PL    1/1:15,41:56:99:1276,126,0
18    44426877    rs644731    C    T    294.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262161    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:327,24,0
18    44435344    rs61749949    T    C    1606.22    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.958;DB;DP=135;Dels=0.0;FS=1.387;HRun=0;HaplotypeScore=2.7801;MQ=59.66;MQ0=0;MQRankSum=0.79;QD=11.9;ReadPosRankSum=-1.058;SNPEFF_AMINO_ACID_CHANGE=L226;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_44435308_44435398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398651    GT:AD:DP:GQ:PL    0/1:75,59:135:99:1636,0,2278
18    44555147    rs139717358    T    G    530.50    MQFilter40    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.126;MQ=23.92;MQ0=41;MQRankSum=-0.214;QD=2.12;ReadPosRankSum=-0.658;SNPEFF_AMINO_ACID_CHANGE=E356A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_44554573_44556449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEB3C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330682    GT:AD:DP:GQ:PL    0/1:190,60:250:99:560,0,3094
18    44555312    rs76539063    G    C    2010.52    MQFilter40    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.255;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.0554;MQ=24.82;MQ0=20;MQRankSum=0.332;QD=8.04;ReadPosRankSum=-1.682;SNPEFF_AMINO_ACID_CHANGE=S301C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_44554573_44556449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEB3C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330682    GT:AD:DP:GQ:PL    0/1:141,108:249:99:2041,0,2589
18    44595809    rs2289036    A    T    1699.65    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.416;DB;DP=50;Dels=0.0;FS=4.114;HRun=1;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;MQRankSum=-1.386;QD=33.99;ReadPosRankSum=0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245121    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1733,104,0
18    44601611    rs3816125    A    G    382.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KATNAL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245121    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:415,30,0
18    44635048    rs2635058    C    T    733.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.89;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300605    GT:AD:DP:GQ:PL    1/1:0,23:23:60.15:766,60,0
18    44639175    rs2571016    G    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300605    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
18    44641397    rs2576058    C    T    784.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300605    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:818,60,0
18    44702502    rs12968552    A    C    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IER3IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256433    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
18    44771419    .    A    AT    129.91    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.206;DP=34;FS=0.0;HRun=13;HaplotypeScore=185.4871;IndelType=I;MQ=58.76;MQ0=0;MQRankSum=0.179;QD=3.82;ReadPosRankSum=0.596;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400404    GT:AD:DP:GQ:PL    0/1:25,9:34:99:169,0,237
18    44771481    rs17723754    C    T    414.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKOR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400404    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:448,33,0
18    45377882    rs35710478    G    C    36.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262160    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:68,6,0
18    45555829    rs7231151    T    C    161.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=17.9;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=T554;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_45553748_45556282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB7C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332053    GT:AD:DP:GQ:PL    0/1:3,6:9:89.22:191,0,89
18    45566276    rs80109066    G    A    522.82    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.146;DB;DP=42;Dels=0.0;FS=1.202;HRun=2;HaplotypeScore=0.9469;MQ=59.45;MQ0=0;MQRankSum=-0.642;QD=12.45;ReadPosRankSum=0.264;SNPEFF_AMINO_ACID_CHANGE=F401;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_45566271_45567494;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB7C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332053    GT:AD:DP:GQ:PL    0/1:22,20:42:99:553,0,653
18    46162993    rs35875164    G    A    241.57    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=18.58;ReadPosRankSum=-1.849;SNPEFF_AMINO_ACID_CHANGE=A15;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_46162985_46163056;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTIF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420275    GT:AD:DP:GQ:PL    0/1:3,10:13:78.98:272,0,79
18    46190298    rs79505651    G    A    244.90    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=15.31;ReadPosRankSum=-0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTIF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256413    GT:AD:DP:GQ:PL    0/1:7,9:16:99:275,0,247
18    46196880    rs2279304    T    A    116.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=51.77;MQ0=0;QD=12.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTIF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256413    GT:AD:DP:GQ:PL    1/1:0,4:9:12.04:149,12,0
18    46196971    rs78396863    G    C    311.39    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.203;DB;DP=25;Dels=0.0;FS=2.269;HRun=1;HaplotypeScore=0.9998;MQ=59.07;MQ0=0;MQRankSum=-0.68;QD=12.46;ReadPosRankSum=-0.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTIF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256413    GT:AD:DP:GQ:PL    0/1:12,13:25:99:341,0,388
18    46284587    rs1038308    T    C    2584.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5731;MQ=59.38;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=L246;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_46284290_46284776;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTIF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420275    GT:AD:DP:GQ:PL    1/1:0,73:74:99:2617,199,0
18    46284840    rs4556859    T    C    1524.25    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.641;DB;DP=134;Dels=0.0;FS=6.243;HRun=0;HaplotypeScore=2.5762;MQ=59.83;MQ0=0;MQRankSum=-1.204;QD=11.38;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTIF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256413    GT:AD:DP:GQ:PL    0/1:73,61:134:99:1554,0,2485
18    46384073    rs937021    A    G    399.16    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.127;DB;DP=31;Dels=0.0;FS=3.153;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.534;QD=12.88;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTIF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256413    GT:AD:DP:GQ:PL    0/1:16,15:31:99:429,0,569
18    46385948    rs3752082    A    G    816.73    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=0.808;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=1.797;QD=14.08;ReadPosRankSum=-0.445;SNPEFF_AMINO_ACID_CHANGE=Q536R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_46385934_46386073;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTIF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420275    GT:AD:DP:GQ:PL    0/1:27,31:58:99:847,0,751
18    46474746    rs3736242    C    T    803.18    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.385;DB;DP=53;Dels=0.0;FS=1.128;HRun=1;HaplotypeScore=0.5784;MQ=58.41;MQ0=0;MQRankSum=0.055;QD=15.15;ReadPosRankSum=-0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262158    GT:AD:DP:GQ:PL    0/1:25,28:53:99:833,0,709
18    46570644    rs111641428    A    G    683.39    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.993;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.54;MQ0=0;MQRankSum=-0.72;QD=13.67;ReadPosRankSum=-0.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269445    GT:AD:DP:GQ:PL    0/1:27,23:50:99:713,0,905
18    46570704    rs45588531    A    G    290.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.416;QD=14.54;ReadPosRankSum=1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269445    GT:AD:DP:GQ:PL    0/1:10,10:20:99:321,0,348
18    46858543    rs73445714    T    G    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269445    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
18    46889514    rs79958143    G    A    517.21    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.022;DB;DP=33;Dels=0.0;FS=1.553;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.018;QD=15.67;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269445    GT:AD:DP:GQ:PL    0/1:14,19:33:99:547,0,380
18    46956521    rs12456754    C    T    466.39    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.206;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.425;QD=15.55;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DYM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269445    GT:AD:DP:GQ:PL    0/1:13,17:30:99:496,0,452
18    47008621    .    G    T    404.89    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.269;DP=41;Dels=0.0;FS=11.516;HRun=1;HaplotypeScore=0.6651;MQ=58.87;MQ0=0;MQRankSum=-0.161;QD=9.88;ReadPosRankSum=1.069;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318240    GT:AD:DP:GQ:PL    0/1:27,14:41:99:435,0,824
18    47008623    .    C    A    478.21    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DP=43;Dels=0.0;FS=11.841;HRun=0;HaplotypeScore=0.6651;MQ=58.92;MQ0=0;MQRankSum=1.189;QD=11.12;ReadPosRankSum=0.842;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318240    GT:AD:DP:GQ:PL    0/1:26,17:43:99:508,0,791
18    47016721    rs3831447    A    AAT    312.82    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.575;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=90.3772;IndelType=I;MQ=58.27;MQ0=0;MQRankSum=-0.212;QD=11.59;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332968    GT:AD:DP:GQ:PL    0/1:20,7:27:99:352,0,806
18    47016787    rs17655989    C    T    962.87    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.71;DB;DP=58;Dels=0.0;FS=9.17;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=-0.33;QD=16.6;ReadPosRankSum=1.343;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332968    GT:AD:DP:GQ:PL    0/1:26,32:58:99:993,0,790
18    47018198    rs17712375    T    G    138.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.779;QD=11.5;ReadPosRankSum=-0.259;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_18_47017902_47018203;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418495    GT:AD:DP:GQ:PL    0/1:6,6:12:99:168,0,203
18    47093790    rs2000812    C    T    514.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261292    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:547,42,0
18    47102002    rs2276269    T    C    208.22    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=14.87;ReadPosRankSum=-1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261292    GT:AD:DP:GQ:PL    0/1:4,10:14:99:238,0,134
18    47102102    rs3819166    A    G    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261292    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
18    47113008    rs6507931    C    T    49.15    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=4.47;ReadPosRankSum=-1.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261292    GT:AD:DP:GQ:PL    0/1:8,3:11:79.14:79,0,272
18    47317767    rs529556    C    T    1179.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285093    GT:AD:DP:GQ:PL    1/1:0,34:34:93.30:1213,93,0
18    47323635    rs35240893    C    CT    167.49    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=23;FS=0.0;HRun=14;HaplotypeScore=201.6746;IndelType=I;MQ=50.13;MQ0=0;MQRankSum=0.066;QD=7.28;ReadPosRankSum=2.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACAA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285093    GT:AD:DP:GQ:PL    0/1:11,10:23:99:207,0,120
18    47361598    rs535045    C    T    375.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:408,30,0
18    47363009    rs621101    C    T    507.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:540,39,0
18    47373074    rs492991    A    G    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
18    47373466    rs3017176    G    A    900.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,29:29:72.21:933,72,0
18    47375932    rs488890    C    G    6631.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;DB;DP=231;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.2211;MQ=59.4;MQ0=0;MQRankSum=1.701;QD=28.71;ReadPosRankSum=0.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:2,229:231:99:6632,542,0
18    47376103    rs490648    C    G    1680.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1713,132,0
18    47376128    rs490697    A    G    995.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6996;MQ=58.5;MQ0=0;QD=32.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,30:31:78.24:1029,78,0
18    47376162    rs17713847    G    A    202.28    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=57.23;MQ0=0;MQRankSum=0.423;QD=11.9;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    0/1:9,7:17:99:232,0,302
18    47401779    rs1217626    A    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
18    47402280    rs657424    A    C    442.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:476,36,0
18    47405019    rs565517    A    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
18    47405198    rs596778    C    T    175.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:209,15,0
18    47406913    rs1217632    A    G    1694.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=36.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1728,126,0
18    47406938    rs1217633    T    C    833.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,26:26:75.20:866,75,0
18    47455923    rs2298628    C    T    232.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=25.87;SNPEFF_AMINO_ACID_CHANGE=V683;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47455882_47455968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:266,21,0
18    47455980    rs67244897    GA    G    54    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=11;FS=0.0;HRun=16;HaplotypeScore=72.9241;IndelType=D;MQ=53.36;MQ0=0;MQRankSum=0.751;QD=4.91;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    0/1:5,5:11:1.31:92,0,1
18    47463587    rs1790797    A    G    1506.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.56;MQ0=0;QD=28.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1540,123,0
18    47463872    rs1787519    A    G    207.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:240,18,0
18    47480660    rs1787299    G    A    1150.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,35:35:90.21:1184,90,0
18    47480898    rs1557359    T    C    239.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:272,24,0
18    47488625    rs17715416    A    G    1066.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,36:36:87.27:1099,87,0
18    47489018    rs17659034    T    C    72.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=24.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
18    47489070    rs58294888    C    G    146.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
18    47489075    rs60533538    A    AG    198.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=59.4838;IndelType=I;MQ=44.1;MQ0=0;QD=39.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
18    47489102    rs3132922    A    G    231.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:264,21,0
18    47563299    rs1815930    T    C    1097.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=T125A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47563220_47563364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356732    GT:AD:DP:GQ:PL    1/1:0,31:31:84.26:1130,84,0
18    47563534    rs9955800    A    G    197.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=32.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285039    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:231,18,0
18    47765121    rs35839946    G    C    315.26    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.493;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.385;QD=13.71;ReadPosRankSum=-0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:11,12:23:99:345,0,368
18    47769017    rs11082812    C    G    38.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
18    47769194    rs1662895    T    C    341.14    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.517;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=13.65;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:13,12:25:99:371,0,462
18    47769551    rs74176759    T    TA    355.05    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.587;DB;DP=24;FS=0.0;HRun=8;HaplotypeScore=55.7747;IndelType=I;MQ=60.45;MQ0=0;MQRankSum=0.658;QD=14.79;ReadPosRankSum=-0.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:10,13:24:83.14:394,0,83
18    47777012    rs1790458    C    T    165.62    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=12.74;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:7,6:13:99:196,0,253
18    47777244    rs35193847    C    T    1923.14    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=155;Dels=0.0;FS=1.271;HRun=2;HaplotypeScore=3.8659;MQ=60.07;MQ0=0;MQRankSum=-1.011;QD=12.41;ReadPosRankSum=-0.464;SNPEFF_AMINO_ACID_CHANGE=E294K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47777128_47777346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:84,71:155:99:1953,0,2529
18    47777358    rs920791    T    A    996.44    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.473;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.206;QD=15.82;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:30,33:63:99:1026,0,941
18    47777747    rs949188    G    A    498.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:531,39,0
18    47778172    rs35295154    A    G    942.56    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=4.224;DB;DP=71;Dels=0.0;FS=5.859;HRun=0;HaplotypeScore=1.9298;MQ=58.69;MQ0=0;MQRankSum=2.192;QD=13.28;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:36,34:71:99:973,0,1123
18    47787402    rs1899671    G    A    1435.29    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.503;DB;DP=74;Dels=0.0;FS=3.296;HRun=1;HaplotypeScore=1.7339;MQ=58.43;MQ0=0;MQRankSum=1.821;QD=19.4;ReadPosRankSum=1.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:29,45:74:99:1465,0,875
18    47787622    rs35999214    CA    C    62.31    QDFilter2    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=33;FS=5.351;HRun=19;HaplotypeScore=390.3342;IndelType=D;MQ=42.15;MQ0=0;MQRankSum=-1.016;QD=1.89;ReadPosRankSum=0.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:20,5:33:42.96:101,0,43
18    47788256    rs698617    C    T    107.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=0.922;QD=13.42;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398545    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,140
18    47800421    rs140689    A    T    270.17    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.603;DB;DP=22;Dels=0.0;FS=3.882;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=12.28;ReadPosRankSum=-0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269468    GT:AD:DP:GQ:PL    0/1:13,9:22:99:300,0,471
18    47801800    rs140690    G    A    168.33    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.869;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.583;QD=12.95;ReadPosRankSum=1.378;SNPEFF_AMINO_ACID_CHANGE=R269;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47801740_47801814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457839    GT:AD:DP:GQ:PL    0/1:6,7:13:99:198,0,199
18    47802971    rs10775495    A    G    219.15    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=13;Dels=0.0;FS=3.041;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.849;QD=16.86;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269468    GT:AD:DP:GQ:PL    0/1:4,9:13:99:249,0,127
18    47803698    rs11314725    GC    G    332.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=5;HaplotypeScore=33.0519;IndelType=D;MQ=58.98;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269468    GT:AD:DP:GQ:PL    1/1:1,11:12:33.09:374,33,0
18    47809871    rs12458654    G    T    222.50    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=23;Dels=0.0;FS=6.897;HRun=0;HaplotypeScore=0.7887;MQ=58.79;MQ0=0;MQRankSum=0.787;QD=9.67;ReadPosRankSum=0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXXC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285106    GT:AD:DP:GQ:PL    0/1:14,9:23:99:252,0,356
18    47810351    rs7228084    A    G    1582.08    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.218;DB;DP=104;Dels=0.0;FS=2.825;HRun=1;HaplotypeScore=1.9965;MQ=59.15;MQ0=0;MQRankSum=1.439;QD=15.21;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=T442;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47810264_47810471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXXC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285106    GT:AD:DP:GQ:PL    0/1:49,55:104:99:1612,0,1587
18    47810731    rs2276367    T    C    141.65    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.514;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.999;QD=5.45;ReadPosRankSum=-1.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXXC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285106    GT:AD:DP:GQ:PL    0/1:18,8:26:99:172,0,609
18    47811305    rs2276366    T    G    155.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.259;QD=6.48;ReadPosRankSum=-0.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXXC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285106    GT:AD:DP:GQ:PL    0/1:16,8:24:99:186,0,518
18    47811374    rs17660776    G    A    411.81    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.822;DB;DP=43;Dels=0.0;FS=9.253;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.58;ReadPosRankSum=-0.942;SNPEFF_AMINO_ACID_CHANGE=L304;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47811372_47811617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXXC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285106    GT:AD:DP:GQ:PL    0/1:24,19:43:99:442,0,800
18    47902337    rs1970679    A    G    439.12    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.908;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.146;QD=18.3;ReadPosRankSum=0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285116    GT:AD:DP:GQ:PL    0/1:10,14:24:99:469,0,341
18    47906416    rs1441293    A    G    564.54    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.641;QD=11.52;ReadPosRankSum=-1.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285116    GT:AD:DP:GQ:PL    0/1:29,20:49:99:595,0,986
18    47906690    rs1441294    T    C    273.20    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.473;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=12.42;ReadPosRankSum=-1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285116    GT:AD:DP:GQ:PL    0/1:10,12:22:99:303,0,362
18    47906719    rs1441295    T    G    106.19    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=8.17;ReadPosRankSum=1.855;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285116    GT:AD:DP:GQ:PL    0/1:8,5:13:99:136,0,275
18    47908556    rs6507992    G    A    671.25    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.841;DB;DP=55;Dels=0.0;FS=1.038;HRun=0;HaplotypeScore=2.6457;MQ=59.58;MQ0=0;MQRankSum=0.518;QD=12.2;ReadPosRankSum=-0.704;SNPEFF_AMINO_ACID_CHANGE=V91I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_47908499_47908596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285116    GT:AD:DP:GQ:PL    0/1:31,24:55:99:701,0,874
18    47911438    rs7234010    C    A    589.54    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=2.066;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=21.06;ReadPosRankSum=-1.918;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285116    GT:AD:DP:GQ:PL    0/1:9,19:28:99:620,0,290
18    47911837    rs7234507    A    T    374.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SKA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285116    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:407,36,0
18    48190271    rs3752085    T    G    178.94    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.044;QD=9.94;ReadPosRankSum=0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540640    GT:AD:DP:GQ:PL    0/1:10,8:18:99:209,0,283
18    48190440    rs3752087    G    A    859.51    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=4.567;DB;DP=43;Dels=0.0;FS=4.722;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.864;QD=19.99;ReadPosRankSum=-2.467;SNPEFF_AMINO_ACID_CHANGE=V38M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_48189459_48190874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400384    GT:AD:DP:GQ:PL    0/1:16,27:43:99:889,0,396
18    48241746    rs17662955    A    G    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400384    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:72,0,70
18    48326352    rs12967343    C    A    461.96    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.591;QD=11.27;ReadPosRankSum=1.484;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256425    GT:AD:DP:GQ:PL    0/1:23,18:41:99:492,0,730
18    48326378    rs2586778    G    T    1657.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256425    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1690,126,0
18    48327815    rs2276186    G    A    6795.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DB;DP=187;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.419;MQ=59.38;MQ0=0;MQRankSum=1.391;QD=36.34;ReadPosRankSum=0.256;SNPEFF_AMINO_ACID_CHANGE=A163;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_48327719_48327874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRO;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256425    GT:AD:DP:GQ:PL    1/1:1,185:187:99:6795,469,0
18    48333203    rs4940019    C    G    2703.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9079;MQ=58.91;MQ0=0;QD=35.11;SNPEFF_AMINO_ACID_CHANGE=R39S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_48333074_48333220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000256425    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2737,202,0
18    48335493    rs59086720    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
18    48586184    rs948589    A    G    544    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.084;DB;DP=38;Dels=0.0;FS=4.639;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.658;QD=14.32;ReadPosRankSum=0.804;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452201    GT:AD:DP:GQ:PL    0/1:18,20:38:99:574,0,600
18    48586344    rs948588    C    T    423.49    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.663;DB;DP=31;Dels=0.0;FS=2.071;HRun=0;HaplotypeScore=0.7887;MQ=59.4;MQ0=0;MQRankSum=-0.1;QD=13.66;ReadPosRankSum=-1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMAD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452201    GT:AD:DP:GQ:PL    0/1:18,13:31:99:453,0,473
18    48723217    rs35675106    C    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_AMINO_ACID_CHANGE=P158;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_48722937_48723690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEX3C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406189    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
18    49867224    rs9951523    T    C    2513.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=F23L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_49867158_49867248;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000442544    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2546,187,0
18    50432602    rs2229080    C    G    882.71    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=58;Dels=0.0;FS=3.654;HRun=1;HaplotypeScore=1.8939;MQ=59.2;MQ0=0;MQRankSum=0.28;QD=15.22;ReadPosRankSum=-0.2;SNPEFF_AMINO_ACID_CHANGE=R134G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_50432414_50432698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304775    GT:AD:DP:GQ:PL    0/1:26,32:58:99:913,0,747
18    50450240    rs2276204    T    G    579.06    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.754;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.56;MQ0=0;MQRankSum=-0.834;QD=13.79;ReadPosRankSum=0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304775    GT:AD:DP:GQ:PL    0/1:23,19:42:99:609,0,679
18    50451500    rs2298655    A    C    247.96    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=17.71;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304775    GT:AD:DP:GQ:PL    0/1:5,9:14:99:278,0,164
18    50451821    rs2298654    T    G    429.52    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.764;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.436;QD=13.86;ReadPosRankSum=1.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304775    GT:AD:DP:GQ:PL    0/1:17,14:31:99:460,0,494
18    50731829    rs4497763    A    G    1186.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=37.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304775    GT:AD:DP:GQ:PL    1/1:0,32:32:93.28:1219,93,0
18    50929098    rs10612041    CAAT    C    4105.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=0;HaplotypeScore=352.1909;IndelType=D;MQ=54.15;MQ0=0;QD=52.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304775    GT:AD:DP:GQ:PL    1/1:1,77:78:99:4106,232,0
18    51053218    rs113173464    T    TCACCCCAGGC    1158.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=155.6924;IndelType=I;MQ=39.42;MQ0=0;QD=50.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442544    GT:AD:DP:GQ:PL    1/1:16,6:23:27.09:1200,27,0
18    51731308    rs140691    G    A    685.97    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=59.46;MQ0=0;MQRankSum=-0.261;QD=15.95;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256429    GT:AD:DP:GQ:PL    0/1:17,26:43:99:716,0,541
18    51797620    rs3730685    C    CTA    1005.83    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.737;DB;DP=39;FS=3.01;HRun=0;HaplotypeScore=112.5369;IndelType=I;MQ=59.21;MQ0=0;MQRankSum=1.139;QD=25.79;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217800    GT:AD:DP:GQ:PL    0/1:22,17:39:99:1045,0,788
18    51797948    rs3730688    A    G    308.78    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.514;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.669;QD=14.7;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217800    GT:AD:DP:GQ:PL    0/1:10,11:21:99:339,0,339
18    51804259    rs610281    C    T    463.78    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.315;DB;DP=47;Dels=0.0;FS=3.079;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=9.87;ReadPosRankSum=-0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217800    GT:AD:DP:GQ:PL    0/1:29,18:47:99:494,0,967
18    51809122    rs2956141    A    T    106.09    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.79;ReadPosRankSum=-2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217800    GT:AD:DP:GQ:PL    0/1:5,4:9:99:136,0,169
18    51813966    rs3730775    T    A    72.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.14;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217800    GT:AD:DP:GQ:PL    0/1:2,4:6:69.36:103,0,69
18    51819989    rs660793    G    C    552.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=38;Dels=0.0;FS=2.27;HRun=0;HaplotypeScore=0.8941;MQ=59.39;MQ0=0;MQRankSum=0.744;QD=14.54;ReadPosRankSum=-0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217800    GT:AD:DP:GQ:PL    0/1:19,19:38:99:583,0,645
18    51820805    rs8305    G    A    3141.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.11;SNPEFF_AMINO_ACID_CHANGE=A652T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_51820019_51820848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406285    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3175,235,0
18    51880841    rs7242085    C    T    780.38    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=51;Dels=0.0;FS=3.116;HRun=2;HaplotypeScore=0.9867;MQ=59.55;MQ0=0;MQRankSum=-0.732;QD=15.3;ReadPosRankSum=-0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STARD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307844    GT:AD:DP:GQ:PL    0/1:22,29:51:99:810,0,625
18    51880986    rs1370363    C    T    546.82    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=33;Dels=0.0;FS=4.613;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.645;QD=16.57;ReadPosRankSum=1.211;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300091    GT:AD:DP:GQ:PL    0/1:15,18:33:99:577,0,492
18    51889007    rs6508289    C    T    112.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.68;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300091    GT:AD:DP:GQ:PL    0/1:2,4:6:65.93:142,0,66
18    51889056    rs6508290    A    G    154.38    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=14.03;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300091    GT:AD:DP:GQ:PL    0/1:5,6:11:99:184,0,170
18    51900472    rs4940327    G    A    117.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300091    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
18    51904461    rs35286005    C    CTTTA    1163.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=71.7813;IndelType=I;MQ=54.94;MQ0=0;QD=68.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300091    GT:AD:DP:GQ:PL    1/1:4,13:17:51.17:1205,51,0
18    51904498    rs3753057    G    A    240.83    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.337;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.59;MQ0=0;MQRankSum=0.868;QD=10.95;ReadPosRankSum=0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300091    GT:AD:DP:GQ:PL    0/1:13,9:22:99:271,0,348
18    51904641    rs3753056    A    G    366.86    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.076;DB;DP=26;Dels=0.0;FS=2.12;HRun=0;HaplotypeScore=0.9916;MQ=57.29;MQ0=0;MQRankSum=0.623;QD=14.11;ReadPosRankSum=0.052;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300091    GT:AD:DP:GQ:PL    0/1:11,15:26:99:397,0,378
18    51904644    rs3753055    G    A    325.97    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=57.17;MQ0=0;MQRankSum=0.299;QD=13.04;ReadPosRankSum=0.136;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300091    GT:AD:DP:GQ:PL    0/1:12,13:25:99:356,0,406
18    52265308    rs9947055    A    C    708.97    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.269;DB;DP=64;Dels=0.0;FS=0.993;HRun=1;HaplotypeScore=3.1441;MQ=59.28;MQ0=0;MQRankSum=0.808;QD=11.08;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=T189P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_52265044_52266724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321600    GT:AD:DP:GQ:PL    0/1:37,26:64:99:739,0,982
18    52551716    rs3737477    C    T    1236.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB27B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262094    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1269,102,0
18    52555398    rs4343367    G    A    2133.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6281;MQ=59.17;MQ0=0;QD=38.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB27B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262094    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2166,166,0
18    52571434    rs4801109    T    C    311.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337363    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:345,27,0
18    52571741    rs4801110    C    T    295.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337363    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
18    52575002    rs1944382    G    A    1099.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337363    GT:AD:DP:GQ:PL    1/1:0,33:33:90.28:1132,90,0
18    52585071    rs59686916    GACACACAC    G    813.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=154.9868;IndelType=D;MQ=44.44;MQ0=0;QD=45.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337363    GT:AD:DP:GQ:PL    1/1:5,11:18:39.13:855,39,0
18    52586545    rs34751112    A    G    733.20    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=0.662;DB;DP=75;Dels=0.0;FS=4.847;HRun=0;HaplotypeScore=0.9734;MQ=59.44;MQ0=0;MQRankSum=-0.326;QD=9.78;ReadPosRankSum=0.662;SNPEFF_AMINO_ACID_CHANGE=V249A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_52586502_52586607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC68;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337363    GT:AD:DP:GQ:PL    0/1:47,28:75:99:763,0,1350
18    52586691    rs8090983    A    G    35.32    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.18;MQ0=0;MQRankSum=0.592;QD=2.72;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337363    GT:AD:DP:GQ:PL    0/1:10,3:13:65.31:65,0,332
18    52605188    rs1344011    C    T    512    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.904;DB;DP=44;Dels=0.0;FS=2.793;HRun=2;HaplotypeScore=1.3302;MQ=60.0;MQ0=0;MQRankSum=-0.458;QD=11.64;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=K115;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_52605188_52605328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC68;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337363    GT:AD:DP:GQ:PL    0/1:22,22:44:99:542,0,695
18    52608329    rs8087479    C    A    680.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337363    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:714,57,0
18    52928807    rs35918540    C    T    1967.01    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=8.673;DB;DP=131;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4263;MQ=59.65;MQ0=0;MQRankSum=-0.658;QD=15.02;ReadPosRankSum=-1.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354452    GT:AD:DP:GQ:PL    0/1:70,61:131:99:1997,0,1749
18    53131179    rs71905229    C    CTGTG    1216.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.133;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=172.3487;IndelType=I;MQ=56.48;MQ0=0;MQRankSum=0.667;QD=40.54;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354452    GT:AD:DP:GQ:PL    1/1:14,14:30:67.79:1258,68,0
18    53252285    rs12455881    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354452    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
18    53252388    rs599550    G    A    1966.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8953;MQ=59.54;MQ0=0;QD=39.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354452    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1999,150,0
18    53302845    rs610362    C    T    870.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398339    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:904,66,0
18    53303101    rs611326    C    G    861.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.46;MQ0=0;QD=33.14;SNPEFF_AMINO_ACID_CHANGE=A10P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_53302934_53303185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398339    GT:AD:DP:GQ:PL    1/1:0,26:26:69.21:895,69,0
18    53696180    rs2551452    C    A    104.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=0.72;QD=17.44;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006305.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382897    GT:AD:DP:GQ:PL    0/1:2,4:6:67.23:135,0,67
18    53727502    rs2535724    T    C    245.03    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.416;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.585;QD=10.65;ReadPosRankSum=1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006305.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382897    GT:AD:DP:GQ:PL    0/1:12,11:23:99:275,0,422
18    54281987    rs17090268    G    T    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217515    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
18    54293843    rs11664091    C    T    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217515    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
18    54339818    rs568078    C    G    1050.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=A24;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_54339728_54339905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,35:35:84.25:1083,84,0
18    54339977    rs566956    A    G    195.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:228,18,0
18    54346482    rs683248    T    G    359.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:393,30,0
18    54346510    rs597585    G    A    750.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:783,60,0
18    54346745    rs34612884    A    AT    226.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=26.6376;IndelType=I;MQ=61.07;MQ0=0;QD=22.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:2,8:10:26.86:269,27,0
18    54348514    rs605067    C    T    1774.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,51:52:99:1807,132,0
18    54348650    rs474607    T    C    1333    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1366,102,0
18    54353382    rs609195    A    T    402.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:436,33,0
18    54354074    rs1943016    C    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.6;MQ0=0;QD=2.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,22:22:11.92:87,12,0
18    54354076    rs5825199    T    TTC    1266.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=146.1141;IndelType=I;MQ=55.43;MQ0=0;QD=52.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:1,23:24:72.25:1309,72,0
18    54354239    rs576095    T    C    825.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.53;MQ0=0;QD=31.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:859,69,0
18    54359062    rs2110414    G    A    1155.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1188,90,0
18    54363747    rs1468742    A    G    782.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:816,60,0
18    54448778    rs2302845    G    A    936.62    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=52;Dels=0.0;FS=8.302;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=18.01;ReadPosRankSum=0.239;SNPEFF_AMINO_ACID_CHANGE=A1027;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_54448764_54448887;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    0/1:21,31:52:99:967,0,495
18    54606039    rs10678198    A    AGTGTGT    417.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=68.1506;IndelType=I;MQ=44.5;MQ0=0;QD=46.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:4,5:9:15.05:459,15,0
18    54694151    rs3745034    A    G    1002.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,27:27:81.25:1036,81,0
18    54694452    rs3745033    C    T    344.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.35;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254442    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:378,30,0
18    55021725    rs3745060    A    C    605.59    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.587;DB;DP=44;Dels=0.0;FS=3.808;HRun=0;HaplotypeScore=2.5655;MQ=59.48;MQ0=0;MQRankSum=-1.01;QD=13.76;ReadPosRankSum=-1.316;SNPEFF_AMINO_ACID_CHANGE=K198T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_55021633_55021755;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000541833    GT:AD:DP:GQ:PL    0/1:21,23:44:99:636,0,705
18    55024099    rs677514    G    A    310.26    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.031;QD=13.49;ReadPosRankSum=-1.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324000    GT:AD:DP:GQ:PL    0/1:11,12:23:99:340,0,400
18    55027212    rs1942964    T    G    45.52    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.925;QD=3.5;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324000    GT:AD:DP:GQ:PL    0/1:10,3:13:75.51:76,0,271
18    55027334    rs1153626    G    T    438.79    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=3.735;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.178;QD=14.15;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=P323;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_55027226_55036162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324000    GT:AD:DP:GQ:PL    0/1:16,15:31:99:469,0,455
18    55027526    rs739692    C    T    108.41    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=9.86;ReadPosRankSum=-0.143;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST8SIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324000    GT:AD:DP:GQ:PL    0/1:6,5:11:99:138,0,155
18    55143589    rs618953    A    G    421.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ONECUT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262095    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:455,36,0
18    55218139    rs12957678    C    T    423.23    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.354;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.094;QD=18.4;ReadPosRankSum=-0.094;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    0/1:9,14:23:99:453,0,295
18    55221368    rs58628398    GAGGACAC    G    953.50    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=4.706;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=259.1515;IndelType=D;MQ=52.89;MQ0=0;MQRankSum=-3.646;QD=25.09;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    0/1:24,14:38:99:993,0,2890
18    55221648    rs536560    T    C    2183.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=P307;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_55221492_55221656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2216,187,0
18    55226254    rs1736440    T    C    250.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:284,21,0
18    55226383    rs536765    G    C    1454.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.64;SNPEFF_AMINO_ACID_CHANGE=P266;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_55226377_55226475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1488,114,0
18    55229895    rs1736439    T    C    34.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
18    55230467    rs3817726    C    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
18    55240455    rs577152    T    C    1187.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.36;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    1/1:0,36:36:93.28:1220,93,0
18    55240505    rs1041951    C    T    544.27    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.504;DB;DP=44;Dels=0.0;FS=9.276;HRun=1;HaplotypeScore=1.7323;MQ=59.05;MQ0=0;MQRankSum=-0.379;QD=12.37;ReadPosRankSum=-0.893;SNPEFF_AMINO_ACID_CHANGE=R102Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_55240478_55240597;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382873    GT:AD:DP:GQ:PL    0/1:24,19:44:99:574,0,694
18    55247118    rs71355630    C    T    30.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.17;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FECH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262093    GT:AD:DP:GQ:PL    0/1:3,2:5:60.85:61,0,111
18    55283236    rs9319918    T    C    231.71    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.134;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.665;QD=7.99;ReadPosRankSum=0.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256854    GT:AD:DP:GQ:PL    0/1:19,10:29:99:262,0,654
18    55287739    rs388644    A    C    649.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256854    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:683,51,0
18    55288007    rs389031    G    A    106.67    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.219;QD=11.85;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256854    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,181
18    55288790    rs446777    C    G    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256854    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:122,9,0
18    55288879    rs368935    A    G    968.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256854    GT:AD:DP:GQ:PL    1/1:0,28:28:78.22:1001,78,0
18    55289076    rs2032938    C    T    82.81    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=1.461;QD=6.9;ReadPosRankSum=-0.244;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NARS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411676    GT:AD:DP:GQ:PL    0/1:7,5:12:99:113,0,222
18    55317676    rs222581    C    T    1033.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_AMINO_ACID_CHANGE=A1152T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_55317599_55317729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,31:31:81.22:1066,81,0
18    55334527    rs317846    A    G    95.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
18    55335495    rs317844    A    G    119.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=29.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
18    55335550    rs28473343    A    C    95.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.133;QD=9.58;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,215
18    55335786    rs56032749    T    TAAAAAA    920.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=16;HaplotypeScore=179.2877;IndelType=I;MQ=40.37;MQ0=0;QD=48.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:11,5:19:40.69:963,41,0
18    55338656    rs317838    G    A    379.03    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.529;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.024;QD=14.04;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    0/1:14,13:27:99:409,0,448
18    55352436    rs319459    G    A    587.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=52.95;MQ0=0;QD=27.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,20:21:48.15:621,48,0
18    55352470    rs10583276    TTTA    T    519.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=106.3887;IndelType=D;MQ=49.05;MQ0=0;QD=37.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:2,12:14:36.12:562,36,0
18    55362532    rs319443    T    G    1815.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6517;MQ=58.76;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=R271;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_55362403_55362561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1849,141,0
18    55362816    rs319442    G    A    515.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:548,42,0
18    55364830    rs319439    G    A    1376.11    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.155;DB;DP=101;Dels=0.0;FS=3.865;HRun=0;HaplotypeScore=3.889;MQ=60.0;MQ0=0;MQRankSum=0.039;QD=13.62;ReadPosRankSum=0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    0/1:52,49:101:99:1406,0,1602
18    55364852    rs319438    A    G    3496.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=D232;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_55364850_55364920;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3496,265,0
18    55365266    rs319437    T    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
18    55368149    rs4940989    G    A    221.56    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=3.166;DB;DP=17;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.357;QD=13.03;ReadPosRankSum=0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    0/1:6,11:17:99:252,0,157
18    55398756    rs651867    T    C    207.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283684    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
18    55399217    rs2459773    G    A    165.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP8B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536015    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
18    55685950    rs7234406    C    T    194.59    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.148;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5731;MQ=40.16;MQ0=0;MQRankSum=-4.123;QD=3.74;ReadPosRankSum=-0.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC090324.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446244    GT:AD:DP:GQ:PL    0/1:33,19:52:99:225,0,977
18    55832750    rs565757    A    G    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,72
18    55832896    rs564442    C    T    172.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=8.21;ReadPosRankSum=-0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:12,9:21:99:202,0,442
18    55983330    rs2288774    T    C    1120.11    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.543;DB;DP=82;Dels=0.0;FS=4.445;HRun=0;HaplotypeScore=1.9787;MQ=59.72;MQ0=0;MQRankSum=0.845;QD=13.66;ReadPosRankSum=-2.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:39,43:82:99:1150,0,1306
18    55990648    rs33986394    T    TA    803.18    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.203;DB;DP=37;FS=4.901;HRun=4;HaplotypeScore=84.6359;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=-1.399;QD=21.71;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:14,23:37:99:842,0,272
18    55997929    rs4149608    CTTCT    C    868.37    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=170.4145;IndelType=D;MQ=57.19;MQ0=0;MQRankSum=-0.741;QD=25.54;ReadPosRankSum=0.777;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:16,18:34:99:907,0,1100
18    56008148    rs4149609    A    G    281.90    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.203;QD=16.58;ReadPosRankSum=-1.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:8,9:17:99:312,0,266
18    56008827    rs4149611    CGTT    C    1001.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.428;DB;DP=48;FS=1.752;HRun=0;HaplotypeScore=192.5635;IndelType=D;MQ=57.44;MQ0=0;MQRankSum=0.144;QD=20.86;ReadPosRankSum=-0.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:24,24:48:99:1040,0,1317
18    56024396    rs10543922    AT    A    256.96    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=109;FS=1.763;HRun=18;HaplotypeScore=686.2222;IndelType=D;MQ=55.03;MQ0=0;MQRankSum=1.129;QD=2.36;ReadPosRankSum=1.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:62,36:109:99:296,0,611
18    56040649    rs1943994    T    C    86.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
18    56054616    rs139626224    AT    A    177.37    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=78.2673;IndelType=D;MQ=54.75;MQ0=0;MQRankSum=1.48;QD=12.67;ReadPosRankSum=0.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEDD4L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256830    GT:AD:DP:GQ:PL    0/1:3,11:14:20.39:216,0,20
18    56118493    rs17669    C    T    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR122;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385044    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
18    56148796    rs1129928    A    G    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
18    56149048    rs3744867    A    G    912.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.51;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,32:32:75.24:945,75,0
18    56149099    rs7240666    T    C    1905.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_AMINO_ACID_CHANGE=I2157V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56148479_56149271;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1939,144,0
18    56182145    rs59425126    A    G    189.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=23.72;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    0/1:2,6:8:55.88:220,0,56
18    56182174    rs7505023    T    C    291.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
18    56191351    rs7228617    C    T    534.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,18:18:48.12:568,48,0
18    56196451    rs7236563    C    T    1644.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=K1791;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56196323_56196470;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1678,135,0
18    56202059    rs10469211    A    G    4267.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6766;MQ=59.83;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,132:133:99:4267,313,0
18    56202418    rs10469212    T    C    2226.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_AMINO_ACID_CHANGE=K1667;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2260,169,0
18    56202768    rs3809983    C    A    1626.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=A1551S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1659,120,0
18    56202982    rs3826594    A    T    1983.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=A1479;SNPEFF_CODON_CHANGE=gcT/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2017,144,0
18    56203074    rs3809982    G    A    1401.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=P1449S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1434,108,0
18    56203120    rs3809981    C    T    1183    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=G1433;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,36:36:96.27:1216,96,0
18    56203411    rs3809980    G    C    1736    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.56;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=P1336;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1769,138,0
18    56203447    rs3809979    A    G    1929.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=37.84;SNPEFF_AMINO_ACID_CHANGE=H1324;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1963,144,0
18    56203891    rs3809978    G    T    2809.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.56;MQ0=0;QD=34.69;SNPEFF_AMINO_ACID_CHANGE=P1176;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2843,214,0
18    56203898    rs3809977    T    G    2690.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5518;MQ=58.84;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=H1174P;SNPEFF_CODON_CHANGE=cAc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2724,211,0
18    56204250    rs3809976    A    C    1901.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.83;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=L1057V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1935,150,0
18    56204387    rs67925233    ACAGTTGATGTGTCCT    A    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=674.334;IndelType=D;MQ=39.62;MQ0=0;QD=78.86;SNPEFF_AMINO_ACID_CHANGE=EDTSTV1006V;SNPEFF_CODON_CHANGE=gaggacacatcaactgtt/gtt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:12,29:41:87.29:3278,87,0
18    56204410    rs55910046    C    T    67.43    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.41;MQ0=0;QD=1.93;SNPEFF_AMINO_ACID_CHANGE=R1003;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,35:35:9.02:99,9,0
18    56204671    rs4940404    A    T    764.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=N916K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:797,63,0
18    56204747    rs3826593    G    A    1054.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=36.37;SNPEFF_AMINO_ACID_CHANGE=T891I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,29:29:81.25:1088,81,0
18    56204932    rs3809973    T    G    787.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.28;SNPEFF_AMINO_ACID_CHANGE=K829N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,26:26:63.18:820,63,0
18    56204945    rs3809972    C    G    829.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=R825T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:862,66,0
18    56204977    rs3809971    C    T    1039.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.64;SNPEFF_AMINO_ACID_CHANGE=T814;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1072,81,0
18    56204991    rs3809970    C    T    1053.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=36.32;SNPEFF_AMINO_ACID_CHANGE=G810S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1086,81,0
18    56205262    rs12103986    A    C    2530.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.7;MQ0=0;QD=33.29;SNPEFF_AMINO_ACID_CHANGE=H719Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56202066_56205456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,75:76:99:2563,190,0
18    56205481    rs9962203    G    A    1041.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1074,78,0
18    56205551    rs9962964    C    T    288.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
18    56205642    rs9962337    G    A    87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
18    56247180    rs9958735    T    C    791.67    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=54;Dels=0.0;FS=7.365;HRun=0;HaplotypeScore=2.6841;MQ=59.57;MQ0=0;MQRankSum=1.636;QD=14.66;ReadPosRankSum=1.446;SNPEFF_AMINO_ACID_CHANGE=L276;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56246046_56247780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    0/1:28,26:54:99:822,0,939
18    56247567    rs9956630    A    G    1076.72    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=92;Dels=0.0;FS=8.838;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.248;QD=11.7;ReadPosRankSum=-0.458;SNPEFF_AMINO_ACID_CHANGE=Y147;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56246046_56247780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    0/1:53,39:92:99:1107,0,1720
18    56247600    rs9944810    C    A    1054.07    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.011;DB;DP=95;Dels=0.0;FS=0.823;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.454;QD=11.1;ReadPosRankSum=-0.05;SNPEFF_AMINO_ACID_CHANGE=R136S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56246046_56247780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    0/1:58,37:95:99:1084,0,1861
18    56274514    rs6566986    A    G    1727    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;QD=28.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,60:61:99:1760,135,0
18    56279025    rs6566987    T    G    1904.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.74;MQ0=0;QD=29.3;SNPEFF_AMINO_ACID_CHANGE=K2T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_56278921_56279049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALPK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361673    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1938,156,0
18    56383323    rs9959997    T    C    260.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.919;QD=17.34;ReadPosRankSum=1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MALT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345724    GT:AD:DP:GQ:PL    0/1:5,10:15:99:290,0,163
18    56390553    rs4940744    A    G    614.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=38.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MALT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345724    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:648,48,0
18    56400826    rs28740963    T    C    155.56    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.238;DB;DP=20;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.664;QD=7.78;ReadPosRankSum=1.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MALT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345724    GT:AD:DP:GQ:PL    0/1:13,7:20:99:186,0,415
18    56409002    rs4940747    A    C    300.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=20.06;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MALT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345724    GT:AD:DP:GQ:PL    0/1:5,10:15:99:331,0,171
18    56807308    rs3744890    C    G    125.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC11C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299714    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
18    56819930    rs3760555    T    C    756.68    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.882;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=16.45;ReadPosRankSum=1.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC11C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299714    GT:AD:DP:GQ:PL    0/1:21,25:46:99:787,0,615
18    56823071    rs4940848    T    A    235.77    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.739;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.582;QD=11.23;ReadPosRankSum=0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC11C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299714    GT:AD:DP:GQ:PL    0/1:13,8:21:99:266,0,447
18    56826077    rs2271731    T    C    125.49    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.532;QD=11.41;ReadPosRankSum=1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC11C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299714    GT:AD:DP:GQ:PL    0/1:6,5:11:99:155,0,221
18    56985789    rs59444152    T    C    113.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=11.37;ReadPosRankSum=-0.47;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_56985528_56985881;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPLX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299721    GT:AD:DP:GQ:PL    0/1:5,5:10:99:144,0,176
18    57000303    rs2298712    G    A    949.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=27.12;ReadPosRankSum=1.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251047    GT:AD:DP:GQ:PL    1/1:1,34:35:47.95:982,48,0
18    57005655    rs10515978    T    C    137.51    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=19.64;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251047    GT:AD:DP:GQ:PL    0/1:2,5:7:61.18:168,0,61
18    57014713    rs7234168    G    T    134.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=6.532;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.103;QD=13.48;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251047    GT:AD:DP:GQ:PL    0/1:5,5:10:99:165,0,167
18    57115044    rs3809991    G    A    314.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:347,27,0
18    57115133    rs3809990    T    C    859.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:893,66,0
18    57115203    rs1893788    T    C    1716.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8188;MQ=59.54;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1749,135,0
18    57115490    rs749999    T    A    109.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:142,12,0
18    57122180    rs115071386    T    C    470.06    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.096;DB;DP=44;Dels=0.0;FS=1.503;HRun=0;HaplotypeScore=1.9681;MQ=60.0;MQ0=0;MQRankSum=0.575;QD=10.68;ReadPosRankSum=-1.113;SNPEFF_AMINO_ACID_CHANGE=H186R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_57122083_57122183;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439986    GT:AD:DP:GQ:PL    0/1:24,20:44:99:500,0,762
18    57133862    rs8083041    T    A    147.40    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=14.74;ReadPosRankSum=-0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    0/1:2,8:10:62.45:177,0,62
18    57134152    rs4940876    A    G    1068.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1102,81,0
18    57136869    rs632899    A    G    892.83    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=4.776;DB;DP=73;Dels=0.0;FS=16.568;HRun=0;HaplotypeScore=0.8321;MQ=59.11;MQ0=0;MQRankSum=0.034;QD=12.23;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    0/1:41,32:73:99:923,0,1297
18    57136902    rs663452    C    A    772.11    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.362;DB;DP=44;Dels=0.0;FS=8.563;HRun=0;HaplotypeScore=1.9778;MQ=58.51;MQ0=0;MQRankSum=1.398;QD=17.55;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    0/1:17,27:44:99:802,0,573
18    57136943    rs650033    G    A    489.49    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.119;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.835;QD=19.58;ReadPosRankSum=1.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    0/1:9,15:25:99:519,0,297
18    57136995    rs643602    G    A    144.12    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=13.1;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    0/1:4,7:11:99:174,0,140
18    57147351    rs1663548    G    A    663.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:696,51,0
18    57147390    rs1790508    C    G    1004.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398179    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1038,75,0
18    57567761    .    T    C    101.98    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.127;DP=30;Dels=0.0;FS=1.744;HRun=2;HaplotypeScore=0.9997;MQ=55.21;MQ0=0;MQRankSum=-0.404;QD=3.4;ReadPosRankSum=0.188;SNPEFF_AMINO_ACID_CHANGE=S54P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_57567660_57567810;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMAIP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269518    GT:AD:DP:GQ:PL    0/1:24,6:30:99:132,0,658
18    57638330    rs10871774    G    A    877    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=scRNA_pseudogene;SNPEFF_GENE_NAME=AC090377.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479616    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:910,69,0
18    57864092    rs12954782    C    G    1121.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,32:32:84.28:1154,84,0
18    59157764    rs680530    T    C    2939.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3046;MQ=59.28;MQ0=0;QD=30.62;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262717    GT:AD:DP:GQ:PL    1/1:1,94:96:99:2973,223,0
18    59158065    rs681902    T    G    1441.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=58.94;MQ0=0;QD=30.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262717    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1474,108,0
18    59158238    rs682451    T    G    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262717    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
18    59170304    rs595093    C    G    4242.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=33.67;SNPEFF_AMINO_ACID_CHANGE=V260;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_59170186_59170353;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH20;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262717    GT:AD:DP:GQ:PL    1/1:0,126:126:99:4242,319,0
18    59174817    rs1547956    C    A    384.68    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.958;QD=15.39;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262717    GT:AD:DP:GQ:PL    0/1:11,14:25:99:415,0,369
18    59206197    rs76022008    C    CT    927.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=8;HaplotypeScore=101.5387;IndelType=I;MQ=59.59;MQ0=0;QD=28.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262717    GT:AD:DP:GQ:PL    1/1:4,28:33:84.72:970,85,0
18    59212511    rs35393695    AT    A    36.56    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=17;HaplotypeScore=197.4745;IndelType=D;MQ=53.61;MQ0=0;QD=1.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262717    GT:AD:DP:GQ:PL    1/1:10,9:21:16.01:78,16,0
18    59217504    rs10439060    T    A    523.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.763;DB;DP=40;Dels=0.0;FS=8.64;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=-1.977;QD=13.09;ReadPosRankSum=0.015;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262717    GT:AD:DP:GQ:PL    0/1:24,16:40:99:554,0,675
18    59712910    rs3833870    G    GA    99.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=10;FS=0.0;HRun=9;HaplotypeScore=24.6249;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=9.99;ReadPosRankSum=-0.361;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:5,5:10:77.05:139,0,77
18    59739962    rs112622481    T    TA    134.52    PASS    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=0.427;DB;DP=56;FS=0.0;HRun=13;HaplotypeScore=254.6373;IndelType=I;MQ=58.53;MQ0=0;MQRankSum=-0.222;QD=2.4;ReadPosRankSum=1.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:39,13:56:99:174,0,362
18    59757837    rs149791238    GA    G    506.88    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=5.332;DB;DP=51;FS=5.573;HRun=4;HaplotypeScore=134.6201;IndelType=D;MQ=60.42;MQ0=0;MQRankSum=0.067;QD=9.94;ReadPosRankSum=0.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:32,19:51:99:546,0,996
18    59768117    rs684944    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:73,0,33
18    59777011    rs2163518    T    C    1638.88    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.75;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.81;MQ0=0;MQRankSum=1.081;QD=13.22;ReadPosRankSum=0.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:68,56:124:99:1669,0,2225
18    59780393    rs3862712    T    A    606.63    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.016;DB;DP=63;Dels=0.0;FS=4.086;HRun=2;HaplotypeScore=4.4281;MQ=59.19;MQ0=0;MQRankSum=-0.773;QD=9.63;ReadPosRankSum=0.73;SNPEFF_AMINO_ACID_CHANGE=I470L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_59780367_59780549;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:39,24:63:99:637,0,1242
18    59805532    rs9959632    T    C    1575.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1608,120,0
18    59810493    rs9965689    T    C    461.17    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=3.587;DB;DP=32;Dels=0.0;FS=1.814;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.624;QD=14.41;ReadPosRankSum=-0.642;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:15,17:32:99:491,0,524
18    59814268    rs9320000    G    A    1023.65    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.007;DB;DP=65;Dels=0.0;FS=3.385;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.172;QD=15.75;ReadPosRankSum=0.873;SNPEFF_AMINO_ACID_CHANGE=H247;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_59814204_59814334;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:32,33:65:99:1054,0,968
18    59814324    rs9320001    G    C    1883.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_AMINO_ACID_CHANGE=H229D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_59814204_59814334;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1916,141,0
18    59815284    rs7243994    G    C    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
18    59824490    rs1021953    A    T    373.26    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.839;DB;DP=24;Dels=0.0;FS=3.171;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.607;QD=15.55;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:11,13:24:99:403,0,385
18    59828769    rs3794908    C    T    181.87    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=13.99;ReadPosRankSum=-1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357637    GT:AD:DP:GQ:PL    0/1:6,7:13:99:212,0,191
18    59894428    rs35190394    TA    T    74.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=12;HaplotypeScore=16.7683;IndelType=D;MQ=61.78;MQ0=0;QD=12.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    1/1:0,6:6:14.92:116,15,0
18    59895014    rs17069628    C    T    132.16    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.52;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:3,5:8:99:162,0,104
18    59925938    rs3752093    G    A    57.72    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.386;QD=5.77;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:7,3:10:87.72:88,0,255
18    59929009    rs9945414    G    A    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:72,0,31
18    59931106    rs9947311    A    G    103.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=57.05;MQ0=0;MQRankSum=-1.638;QD=12.95;ReadPosRankSum=-2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,140
18    59931395    rs17069670    A    G    484.82    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=59.32;MQ0=0;MQRankSum=-0.673;QD=14.26;ReadPosRankSum=-0.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:16,18:34:99:515,0,538
18    59942586    rs112272563    GT    G    146.18    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=27;FS=2.197;HRun=13;HaplotypeScore=121.0891;IndelType=D;MQ=57.76;MQ0=0;MQRankSum=1.173;QD=5.41;ReadPosRankSum=0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:12,11:27:99:185,0,154
18    59942691    rs9948159    T    C    325.86    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.374;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=56.81;MQ0=0;MQRankSum=-0.071;QD=8.81;ReadPosRankSum=-0.106;SNPEFF_AMINO_ACID_CHANGE=A1018;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_59942607_59942706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:23,14:37:99:356,0,585
18    59947118    rs2980981    G    A    2263.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2297,166,0
18    59947970    rs74513184    CTG    C    293.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.883;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=108.2878;IndelType=D;MQ=58.96;MQ0=0;MQRankSum=0.706;QD=16.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:9,9:18:99:333,0,441
18    59947988    rs1506325    G    A    577.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=38.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:610,45,0
18    59954765    rs1567038    G    T    1558.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1591,126,0
18    59966189    rs17719830    G    A    208.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.91;QD=14.92;ReadPosRankSum=1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1468;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000256858    GT:AD:DP:GQ:PL    0/1:7,7:14:99:239,0,249
18    60015207    rs11152342    G    C    39.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.8;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:2,2:4:58.38:69,0,58
18    60025458    rs72200271    G    GT    78.13    QDFilter2    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=1.327;DB;DP=67;FS=1.885;HRun=15;HaplotypeScore=499.6795;IndelType=I;MQ=55.73;MQ0=0;MQRankSum=-0.195;QD=1.17;ReadPosRankSum=-2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:53,9:67:99:117,0,310
18    60027149    rs6567271    T    A    412.04    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.361;DB;DP=48;Dels=0.0;FS=3.928;HRun=0;HaplotypeScore=0.5784;MQ=58.55;MQ0=0;MQRankSum=-0.151;QD=8.58;ReadPosRankSum=-0.547;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:33,15:48:99:442,0,1119
18    60027171    rs6567272    C    T    425.13    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=1.017;DB;DP=63;Dels=0.0;FS=9.211;HRun=0;HaplotypeScore=1.748;MQ=58.89;MQ0=0;MQRankSum=-0.984;QD=6.75;ReadPosRankSum=-0.607;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:43,20:63:99:455,0,1323
18    60027241    rs1805034    C    T    694.62    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=3.358;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.34;MQ0=0;MQRankSum=-0.343;QD=9.92;ReadPosRankSum=1.63;SNPEFF_AMINO_ACID_CHANGE=A192V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_60027188_60027282;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:45,25:70:99:725,0,1176
18    60027361    rs9653064    G    A    234.50    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.965;QD=16.75;ReadPosRankSum=-0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:6,8:14:99:264,0,203
18    60028762    rs8099222    G    A    151.61    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.85;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:4,5:9:99:182,0,109
18    60029014    rs148185533    A    G    1113.51    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=4.898;DB;DP=111;Dels=0.0;FS=1.242;HRun=3;HaplotypeScore=2.3989;MQ=59.79;MQ0=0;MQRankSum=0.654;QD=10.03;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=K240E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_60028913_60029026;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:60,51:111:99:1144,0,2054
18    60029217    rs34256674    T    C    104.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.73;MQ0=0;MQRankSum=-0.55;QD=14.89;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:3,4:7:98.05:134,0,98
18    60029238    rs7239667    G    C    33.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=55.21;MQ0=0;MQRankSum=-1.026;QD=6.63;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:2,3:5:63.16:63,0,74
18    60036083    rs8092336    A    G    722.34    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.917;QD=13.89;ReadPosRankSum=0.343;SNPEFF_AMINO_ACID_CHANGE=T311;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_60035934_60036717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFRSF11A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269485    GT:AD:DP:GQ:PL    0/1:22,30:52:99:752,0,701
18    60206800    rs55722786    G    T    81.25    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.859;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.653;QD=4.78;ReadPosRankSum=-1.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    0/1:11,6:17:99:111,0,399
18    60207238    rs8087459    A    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
18    60212013    rs143702074    ATG    A    304.57    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.429;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=95.8645;IndelType=D;MQ=60.45;MQ0=0;MQRankSum=-0.246;QD=12.69;ReadPosRankSum=1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    0/1:14,10:24:99:344,0,487
18    60225865    rs72941651    G    C    67.64    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=6.76;ReadPosRankSum=-0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    0/1:7,3:10:97.63:98,0,247
18    60227939    rs67444448    TAATTA    T    1204.03    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=5.519;DB;DP=54;FS=6.673;HRun=0;HaplotypeScore=284.9921;IndelType=D;MQ=56.89;MQ0=0;MQRankSum=0.11;QD=22.3;ReadPosRankSum=-0.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    0/1:31,23:54:99:1243,0,2201
18    60232405    rs4940561    C    T    1527.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1561,114,0
18    60237388    rs8096750    A    G    1717.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_AMINO_ACID_CHANGE=S633;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_60237336_60237464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1751,132,0
18    60241732    rs3744926    C    T    2250.88    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=4.398;DB;DP=169;Dels=0.0;FS=3.597;HRun=0;HaplotypeScore=1.367;MQ=58.95;MQ0=0;MQRankSum=-1.183;QD=13.32;ReadPosRankSum=0.465;SNPEFF_AMINO_ACID_CHANGE=P806;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_60241290_60242783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    0/1:89,80:169:99:2281,0,2730
18    60243876    rs11557713    G    A    504.17    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.617;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.509;QD=19.39;ReadPosRankSum=-0.755;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269499    GT:AD:DP:GQ:PL    0/1:9,17:26:99:534,0,299
18    60506353    rs151311574    T    G    73.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.28;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262719    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,106
18    60612536    rs525092    T    G    3044.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262719    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3077,226,0
18    60612685    rs523478    A    C    177.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262719    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:210,18,0
18    60630531    rs547690    T    C    2169.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.25;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262719    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2203,166,0
18    61022634    rs1809319    T    C    375.09    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.817;DB;DP=19;Dels=0.0;FS=4.867;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.479;QD=19.74;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326575    GT:AD:DP:GQ:PL    0/1:7,12:19:99:405,0,231
18    61022791    rs2003149    C    T    450.45    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.18;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.1;QD=14.53;ReadPosRankSum=-1.982;SNPEFF_AMINO_ACID_CHANGE=V87;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61022731_61022796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDSR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326575    GT:AD:DP:GQ:PL    0/1:13,18:31:99:480,0,391
18    61034175    rs427065    A    G    319.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326575    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
18    61034420    rs402348    T    G    39.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=54.2;MQ0=0;MQRankSum=0.358;QD=7.84;ReadPosRankSum=1.231;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_18_61034244_61034437;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326575    GT:AD:DP:GQ:PL    0/1:2,3:5:32.73:69,0,33
18    61060873    rs898890    G    A    492.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238497    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:526,39,0
18    61066463    rs2276317    A    G    2228.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238497    GT:AD:DP:GQ:PL    1/1:0,62:63:99:2261,171,0
18    61067122    rs9965766    C    T    143.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238497    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:176,15,0
18    61067588    rs11152381    C    T    160.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238497    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:193,15,0
18    61067959    rs952245    T    C    917.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238497    GT:AD:DP:GQ:PL    1/1:0,30:30:78.21:951,78,0
18    61077757    rs9952252    T    C    645.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238497    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:678,54,0
18    61078888    rs34726521    G    GT    381.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;DB;DP=30;FS=0.0;HRun=14;HaplotypeScore=97.8748;IndelType=I;MQ=60.86;MQ0=0;MQRankSum=0.3;QD=12.72;ReadPosRankSum=-1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000238497    GT:AD:DP:GQ:PL    1/1:10,17:30:23.97:424,24,0
18    61154043    rs34587228    T    C    331.31    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.845;QD=19.49;ReadPosRankSum=1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    0/1:5,12:17:99:361,0,148
18    61154388    rs2271254    C    T    115.91    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=8.28;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    0/1:9,5:14:99:146,0,328
18    61156301    .    A    G    41.69    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
18    61156606    rs12454742    G    C    796.91    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=3.585;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.009;QD=15.04;ReadPosRankSum=-0.294;SNPEFF_AMINO_ACID_CHANGE=P111;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61156580_61156697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    0/1:27,26:53:99:827,0,823
18    61160035    rs1858143    G    A    129.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=11.77;ReadPosRankSum=-2.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424602    GT:AD:DP:GQ:PL    0/1:5,6:11:99:159,0,170
18    61160287    rs2289519    T    C    1225.20    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=3.078;DB;DP=88;Dels=0.0;FS=5.763;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.046;QD=13.92;ReadPosRankSum=-0.998;SNPEFF_AMINO_ACID_CHANGE=S176P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61160186_61160328;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    0/1:42,46:88:99:1255,0,1438
18    61160385    rs2289521    T    C    313.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.903;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=17.42;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424602    GT:AD:DP:GQ:PL    0/1:8,10:18:99:344,0,222
18    61166270    rs62098274    G    A    212.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=30.3;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:245,18,0
18    61170467    rs1840557    G    A    76.19    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    0/1:1,3:4:26.54:106,0,27
18    61170500    rs1455557    T    C    193.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=24.2;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    0/1:2,6:8:56.57:224,0,57
18    61170721    rs1455556    T    C    750.90    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.377;DB;DP=54;Dels=0.0;FS=1.115;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.781;QD=13.91;ReadPosRankSum=0.85;SNPEFF_AMINO_ACID_CHANGE=S298;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61170563_61172318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    0/1:25,29:54:99:781,0,762
18    61170782    rs1455555    A    G    665.61    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DB;DP=37;Dels=0.0;FS=7.195;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=1.763;QD=17.99;ReadPosRankSum=0.077;SNPEFF_AMINO_ACID_CHANGE=I319V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61170563_61172318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    0/1:16,21:37:99:696,0,537
18    61170925    rs8093128    T    C    3174.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7289;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_AMINO_ACID_CHANGE=I366;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61170563_61172318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382771    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3207,232,0
18    61225396    rs8097462    G    A    71.06    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=8.88;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,142
18    61225801    rs7244584    C    T    540.48    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.862;DB;DP=34;Dels=0.0;FS=5.11;HRun=2;HaplotypeScore=0.8321;MQ=59.32;MQ0=0;MQRankSum=-0.777;QD=15.9;ReadPosRankSum=1.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:16,18:34:99:570,0,483
18    61226694    rs11152391    G    A    157.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.718;QD=13.1;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:6,6:12:99:187,0,193
18    61226740    rs12103954    G    A    328.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.218;DB;DP=22;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.394;QD=14.94;ReadPosRankSum=1.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:11,11:22:99:359,0,291
18    61228248    rs9676250    T    C    726.92    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=5.256;DB;DP=49;Dels=0.0;FS=9.305;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=14.84;ReadPosRankSum=1.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:27,22:49:99:757,0,870
18    61231105    rs111848852    G    A    113.11    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;MQRankSum=-0.684;QD=14.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:3,5:8:89.91:143,0,90
18    61231143    rs55994244    AAAAAT    A    282.70    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=21;FS=2.392;HRun=0;HaplotypeScore=210.8274;IndelType=D;MQ=48.63;MQ0=0;MQRankSum=1.589;QD=13.46;ReadPosRankSum=2.826;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:12,9:21:99:322,0,368
18    61231417    rs9957786    A    G    386.75    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.033;DB;DP=28;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.655;QD=13.81;ReadPosRankSum=0.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:15,13:28:99:417,0,453
18    61233739    rs2077549    T    C    518.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.05;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-1.1;QD=11.52;ReadPosRankSum=-0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269491    GT:AD:DP:GQ:PL    0/1:27,18:45:99:548,0,860
18    61254525    rs3216123    A    AT    336.17    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.931;DB;DP=27;FS=0.0;HRun=8;HaplotypeScore=75.3803;IndelType=I;MQ=58.68;MQ0=0;MQRankSum=0.734;QD=12.45;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431153    GT:AD:DP:GQ:PL    0/1:14,13:27:99:375,0,254
18    61256117    rs77936810    GC    G    180.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=24.9363;IndelType=D;MQ=62.36;MQ0=0;MQRankSum=0.573;QD=20.05;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269489    GT:AD:DP:GQ:PL    0/1:3,6:9:99:219,0,102
18    61259508    rs78722153    C    T    142.16    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.08;MQ0=0;MQRankSum=-0.648;QD=8.36;ReadPosRankSum=1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479842    GT:AD:DP:GQ:PL    0/1:11,6:17:99:172,0,287
18    61261515    rs11152394    T    C    290.11    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=15.27;ReadPosRankSum=-0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431153    GT:AD:DP:GQ:PL    0/1:10,9:19:99:320,0,290
18    61261540    rs11152395    T    C    375.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.184;QD=15.65;ReadPosRankSum=-0.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431153    GT:AD:DP:GQ:PL    0/1:12,12:24:99:405,0,385
18    61261565    rs11152396    C    G    501.12    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.817;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.99;QD=13.92;ReadPosRankSum=-0.971;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431153    GT:AD:DP:GQ:PL    0/1:16,20:36:99:531,0,538
18    61262367    rs17071357    C    T    516.13    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=68;Dels=0.0;FS=7.848;HRun=0;HaplotypeScore=0.0;MQ=59.04;MQ0=0;MQRankSum=0.774;QD=7.59;ReadPosRankSum=-0.404;SNPEFF_AMINO_ACID_CHANGE=N158;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61262263_61262418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539341    GT:AD:DP:GQ:PL    0/1:48,20:68:99:546,0,1475
18    61264298    rs1020694    G    A    1199.33    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.563;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.344;QD=13.95;ReadPosRankSum=-0.067;SNPEFF_AMINO_ACID_CHANGE=G211S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61264193_61264979;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539341    GT:AD:DP:GQ:PL    0/1:48,38:86:99:1229,0,1290
18    61264468    rs1020693    C    T    546.53    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.494;DB;DP=44;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.158;QD=12.42;ReadPosRankSum=-0.943;SNPEFF_AMINO_ACID_CHANGE=T267;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61264193_61264979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539341    GT:AD:DP:GQ:PL    0/1:26,18:44:99:577,0,726
18    61308895    rs2518061    A    G    1796.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=52.79;MQ0=0;QD=35.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498496    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1830,147,0
18    61309139    rs2518060    G    A    499.56    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.464;DB;DP=62;Dels=0.0;FS=4.808;HRun=5;HaplotypeScore=0.9987;MQ=43.71;MQ0=3;MQRankSum=-3.538;QD=8.06;ReadPosRankSum=-0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498496    GT:AD:DP:GQ:PL    0/1:36,26:62:99:530,0,1064
18    61310374    rs2687472    C    T    539.62    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.941;DB;DP=35;Dels=0.0;FS=10.352;HRun=0;HaplotypeScore=0.6651;MQ=58.2;MQ0=0;MQRankSum=1.304;QD=15.42;ReadPosRankSum=0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341074    GT:AD:DP:GQ:PL    0/1:17,18:35:99:570,0,499
18    61325905    rs7228687    T    G    632.64    PASS    AB=0.281;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.675;DB;DP=32;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=1.023;QD=19.77;ReadPosRankSum=-0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283752    GT:AD:DP:GQ:PL    0/1:9,23:32:99:663,0,226
18    61326505    rs8089032    T    A    770.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.2;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283752    GT:AD:DP:GQ:PL    1/1:0,22:22:66.17:804,66,0
18    61326597    rs8085479    A    C    1831.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.68;MQ0=1;QD=30.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283752    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1864,138,0
18    61326602    rs8085482    A    G    1636.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=1;QD=28.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283752    GT:AD:DP:GQ:PL    1/1:1,57:58:99:1670,126,0
18    61326609    rs8089201    T    G    1807.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=53.15;MQ0=1;QD=30.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283752    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1840,138,0
18    61326628    rs11370831    A    AT    2609.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.0;HRun=2;HaplotypeScore=597.9179;IndelType=I;MQ=55.33;MQ0=0;QD=37.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283752    GT:AD:DP:GQ:PL    1/1:2,67:62:99:2651,187,0
18    61377579    rs1395268    A    C    3688.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=E51A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61377413_61377595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538847    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3689,268,0
18    61377644    rs1395269    T    G    1006.68    PASS    AB=0.358;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.25;DB;DP=53;Dels=0.0;FS=1.829;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.25;QD=18.99;ReadPosRankSum=-1.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536691    GT:AD:DP:GQ:PL    0/1:19,34:53:99:1037,0,617
18    61378743    rs1506424    G    T    533.29    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.364;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.2;MQ0=0;MQRankSum=1.176;QD=18.39;ReadPosRankSum=-0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536691    GT:AD:DP:GQ:PL    0/1:12,17:29:99:563,0,363
18    61379838    rs4940595    T    G    1043.33    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.369;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.71;MQ0=0;MQRankSum=0.939;QD=13.04;ReadPosRankSum=-1.055;SNPEFF_AMINO_ACID_CHANGE=*90E;SNPEFF_CODON_CHANGE=Taa/Gaa;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_18_61379799_61379927;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000544088    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1073,0,1221
18    61383160    rs8085655    G    A    67.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536691    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:97,0,26
18    61383354    rs17071550    C    T    155.04    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=9.69;ReadPosRankSum=-2.007;SNPEFF_AMINO_ACID_CHANGE=T148M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61383269_61383386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544088    GT:AD:DP:GQ:PL    0/1:10,6:16:99:185,0,272
18    61387312    rs1506418    G    A    661.92    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.856;DB;DP=55;Dels=0.0;FS=6.138;HRun=0;HaplotypeScore=2.6182;MQ=59.58;MQ0=0;MQRankSum=-0.461;QD=12.03;ReadPosRankSum=0.096;SNPEFF_AMINO_ACID_CHANGE=A181T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61387247_61387389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544088    GT:AD:DP:GQ:PL    0/1:31,24:55:99:692,0,909
18    61387333    rs1506419    T    A    573.31    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=47;Dels=0.0;FS=5.089;HRun=2;HaplotypeScore=0.9983;MQ=59.51;MQ0=0;MQRankSum=1.431;QD=12.2;ReadPosRankSum=-1.13;SNPEFF_AMINO_ACID_CHANGE=W13R;SNPEFF_CODON_CHANGE=Tgg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61387247_61387389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536691    GT:AD:DP:GQ:PL    0/1:27,20:47:99:603,0,904
18    61387389    rs1506420    G    A    162.73    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.053;DB;DP=28;Dels=0.0;FS=2.586;HRun=1;HaplotypeScore=1.7675;MQ=59.17;MQ0=0;MQRankSum=0.849;QD=5.81;ReadPosRankSum=-1.433;SNPEFF_AMINO_ACID_CHANGE=E206;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61387247_61387389;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544088    GT:AD:DP:GQ:PL    0/1:21,7:28:99:193,0,761
18    61390316    rs1395265    C    A    2651.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.973;MQ=59.13;MQ0=0;QD=33.15;SNPEFF_AMINO_ACID_CHANGE=R113;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61390229_61390804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536691    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2685,208,0
18    61390332    rs1395266    C    T    2819.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5782;MQ=59.14;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=T118I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61390229_61390804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536691    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2853,214,0
18    61390361    rs1395267    T    C    2470.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.33;MQ0=0;QD=35.81;SNPEFF_AMINO_ACID_CHANGE=S101P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61390229_61391123;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538847    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2504,187,0
18    61390570    rs953695    T    G    5273.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.33;MQ0=0;QD=31.96;SNPEFF_AMINO_ACID_CHANGE=L170;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61390229_61391123;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538847    GT:AD:DP:GQ:PL    1/1:0,165:165:99:5273,403,0
18    61390649    rs953696    C    T    4185.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.43;MQ0=0;QD=34.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489748    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4185,319,0
18    61390833    rs953694    T    C    170.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SERPINB11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489748    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
18    61463784    rs1701648    G    T    67.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.537;QD=11.27;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425392    GT:AD:DP:GQ:PL    0/1:3,3:6:97.63:98,0,98
18    61465746    rs34405525    GA    G    138.69    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;FS=0.0;HRun=7;HaplotypeScore=48.4917;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.635;QD=11.56;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425392    GT:AD:DP:GQ:PL    0/1:6,6:12:99:178,0,147
18    61465810    rs1720858    A    G    577.50    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.897;DB;DP=40;Dels=0.0;FS=1.941;HRun=0;HaplotypeScore=1.9523;MQ=58.4;MQ0=0;MQRankSum=-0.301;QD=14.44;ReadPosRankSum=1.559;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425392    GT:AD:DP:GQ:PL    0/1:17,23:40:99:607,0,546
18    61465822    rs113041735    A    AT    702.42    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=3.174;DB;DP=54;FS=3.103;HRun=9;HaplotypeScore=246.8565;IndelType=I;MQ=58.59;MQ0=0;MQRankSum=-0.957;QD=13.01;ReadPosRankSum=0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425392    GT:AD:DP:GQ:PL    0/1:29,25:54:99:741,0,380
18    61468306    rs2689399    G    C    308.61    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.224;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=1.017;QD=7.53;ReadPosRankSum=-1.848;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425392    GT:AD:DP:GQ:PL    0/1:29,12:41:99:339,0,1001
18    61575120    rs1916661    G    T    134.10    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.96;MQ0=0;MQRankSum=-0.573;QD=14.9;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299502    GT:AD:DP:GQ:PL    0/1:3,6:9:99:164,0,100
18    61575166    rs11417838    A    AT    65.71    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=30;FS=1.965;HRun=16;HaplotypeScore=205.5688;IndelType=I;MQ=55.6;MQ0=0;MQRankSum=0.489;QD=2.19;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299502    GT:AD:DP:GQ:PL    0/1:16,6:30:99:105,0,171
18    61637222    rs71355106    C    G    500.64    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.549;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.646;QD=16.69;ReadPosRankSum=-1.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498680    GT:AD:DP:GQ:PL    0/1:11,19:30:99:531,0,364
18    61647069    rs1944270    G    A    2478.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.22;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5585;MQ=59.63;MQ0=0;MQRankSum=0.558;QD=33.49;ReadPosRankSum=0.558;SNPEFF_AMINO_ACID_CHANGE=R68Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61647035_61647172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353706    GT:AD:DP:GQ:PL    1/1:2,72:74:99:2511,151,0
18    61654297    rs3169983    A    G    594.78    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.027;DB;DP=40;Dels=0.0;FS=7.883;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.785;QD=14.87;ReadPosRankSum=0.325;SNPEFF_AMINO_ACID_CHANGE=T122A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61654108_61654789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542677    GT:AD:DP:GQ:PL    0/1:21,19:40:99:625,0,633
18    61654463    rs3826616    A    G    1855.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.483;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.994;QD=28.99;ReadPosRankSum=1.164;SNPEFF_AMINO_ACID_CHANGE=H177R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_61654108_61654789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPINB8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542677    GT:AD:DP:GQ:PL    1/1:1,63:64:99:1889,114,0
18    63430340    rs2276190    G    A    70.58    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.82;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,158
18    63430344    rs2276191    T    G    56.74    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.09;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    0/1:5,3:8:86.73:87,0,164
18    63476810    rs11151216    C    T    162.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
18    63477317    rs142445784    GA    G    291.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=13;HaplotypeScore=79.2772;IndelType=D;MQ=57.46;MQ0=0;QD=15.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    1/1:3,15:19:46.72:334,47,0
18    63489378    rs8097752    C    T    1351.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.54;SNPEFF_AMINO_ACID_CHANGE=V229;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_63489317_63489484;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1384,102,0
18    63492199    rs6566180    A    G    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
18    63510820    rs9950051    G    A    131.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
18    63511411    .    A    T    114.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=63.94;MQ0=0;MQRankSum=0.731;QD=22.9;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:147,12,0
18    63530016    rs2291343    A    G    1344.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=N576S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_63529902_63530153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1378,108,0
18    63530140    rs17711596    C    T    215.75    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DB;DP=32;Dels=0.0;FS=1.573;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.979;QD=6.74;ReadPosRankSum=-0.283;SNPEFF_AMINO_ACID_CHANGE=V617;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_63529902_63530153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323011    GT:AD:DP:GQ:PL    0/1:23,9:32:99:246,0,577
18    64172626    rs6566213    T    C    432.89    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.905;DB;DP=23;Dels=0.0;FS=4.586;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.613;QD=18.82;ReadPosRankSum=0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262150    GT:AD:DP:GQ:PL    0/1:8,15:23:99:463,0,261
18    64176365    rs1055335    G    T    350.28    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=52;Dels=0.0;FS=8.892;HRun=0;HaplotypeScore=4.9098;MQ=58.66;MQ0=0;MQRankSum=0.65;QD=6.74;ReadPosRankSum=-0.65;SNPEFF_AMINO_ACID_CHANGE=T565;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_64176232_64176483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262150    GT:AD:DP:GQ:PL    0/1:36,16:52:99:380,0,986
18    64239409    rs80135198    C    T    805.16    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=69;Dels=0.0;FS=5.374;HRun=0;HaplotypeScore=1.7333;MQ=59.33;MQ0=0;MQRankSum=1.973;QD=11.67;ReadPosRankSum=0.621;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH19;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000454642    GT:AD:DP:GQ:PL    0/1:42,27:69:99:835,0,1304
18    66367607    rs72955911    A    G    2657.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299608    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2691,202,0
18    66503897    rs67054963    CAA    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=19;HaplotypeScore=251.1618;IndelType=D;MQ=31.53;MQ0=0;QD=2.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:3,6:18:13.12:82,13,0
18    66504093    rs485613    A    C    1997.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.4787;MQ=57.25;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=A31;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_66503986_66504606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2030,162,0
18    66504351    rs637051    G    A    2371.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.68;MQ0=0;QD=32.93;SNPEFF_AMINO_ACID_CHANGE=R117;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_66503986_66504606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2404,181,0
18    66504459    rs572020    A    T    3020.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=59.51;MQ0=0;QD=35.13;SNPEFF_AMINO_ACID_CHANGE=K153N;SNPEFF_CODON_CHANGE=aaA/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_66503986_66504606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3054,229,0
18    66504715    rs569403    T    C    916.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:0,25:25:72.22:950,72,0
18    66513471    rs1954878    C    G    162.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:195,15,0
18    66513615    rs2187094    A    G    373.01    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.644;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=1.804;QD=9.1;ReadPosRankSum=-0.04;SNPEFF_AMINO_ACID_CHANGE=K298R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_66513550_66513658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    0/1:25,16:41:99:403,0,737
18    66513662    rs1977942    T    C    392.02    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=27;Dels=0.0;FS=4.53;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.176;QD=14.52;ReadPosRankSum=-0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    0/1:10,17:27:99:422,0,329
18    66513749    rs1970675    T    C    188.22    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=18.82;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    0/1:4,6:10:99:218,0,134
18    66678131    rs7234663    A    G    242.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
18    66678453    rs930164    A    G    245.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
18    66678516    rs930163    A    G    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC102B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319445    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
18    67266937    rs11660014    T    C    70.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=10.08;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382713    GT:AD:DP:GQ:PL    0/1:3,4:7:99:101,0,100
18    67345034    rs8099030    T    C    166.08    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.079;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.581;QD=5.93;ReadPosRankSum=1.024;SNPEFF_AMINO_ACID_CHANGE=D118;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_67344970_67345089;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382713    GT:AD:DP:GQ:PL    0/1:21,7:28:99:196,0,659
18    67365577    rs7241894    G    A    191.35    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.391;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.439;QD=11.26;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382713    GT:AD:DP:GQ:PL    0/1:10,7:17:99:221,0,314
18    67365585    rs4581806    A    G    182.62    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.585;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.036;QD=8.7;ReadPosRankSum=0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382713    GT:AD:DP:GQ:PL    0/1:13,8:21:99:213,0,473
18    67406465    rs2164489    G    T    960.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.11;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382713    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:994,75,0
18    67531642    rs763361    T    C    773.75    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.525;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.132;QD=13.82;ReadPosRankSum=-0.629;SNPEFF_AMINO_ACID_CHANGE=S307G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_67528097_67531675;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    0/1:22,34:56:99:804,0,774
18    67531797    rs763362    A    G    103.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=11.45;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,178
18    67531895    rs1790931    T    A    82.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.65;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:113,0,28
18    67562657    rs12968499    T    C    87.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
18    67562677    rs1790930    G    C    87.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
18    67563309    rs1630425    A    C    601.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    1/1:0,19:19:51.12:634,51,0
18    67563348    rs1788115    T    C    201.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
18    67613926    rs10782036    A    G    620.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.18;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    1/1:0,20:20:54.12:653,54,0
18    67614674    rs35995527    T    TA    1396.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.955;DB;DP=61;FS=0.0;HRun=11;HaplotypeScore=169.9374;IndelType=I;MQ=59.6;MQ0=0;MQRankSum=1.45;QD=22.89;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000280200    GT:AD:DP:GQ:PL    1/1:13,48:61:99:1438,124,0
18    67685007    rs7244421    C    T    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
18    67718688    rs4891392    A    G    2113.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=F1761S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_67718647_67718784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2147,163,0
18    67724802    rs12968602    A    G    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437017    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
18    67726975    rs11876398    A    G    312.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437017    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:345,27,0
18    67727003    rs1435086    A    T    461.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437017    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:495,36,0
18    67733234    rs11151561    T    A    445.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:1,13:14:36.12:479,36,0
18    67741117    rs1369292    G    A    786.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:819,66,0
18    67741309    rs1369293    G    A    269.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:303,24,0
18    67742801    rs285228    G    A    1182.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=29.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,40:40:93.28:1216,93,0
18    67754148    rs1461425    C    T    156.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=26.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:189,15,0
18    67759549    rs4891394    C    A    332.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:366,27,0
18    67802250    rs4891814    T    C    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
18    67809647    rs11665653    A    C    494.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.77;MQ0=0;QD=16.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,30:30:51.10:527,51,0
18    67812773    rs11662011    G    A    314.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:348,27,0
18    67815906    rs9807719    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
18    67817744    rs12606964    T    C    839.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:873,69,0
18    67818046    rs12604751    C    T    1032.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,31:31:84.19:1065,84,0
18    67818066    rs12607032    T    C    495.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:528,42,0
18    67860719    rs283250    T    C    699.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:732,57,0
18    67863532    rs34208258    GA    G    57.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=13;HaplotypeScore=29.2159;IndelType=D;MQ=60.0;MQ0=0;QD=8.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,5:7:15.98:99,16,0
18    67863850    rs74941514    T    TCTC    5626.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;FS=0.0;HRun=0;HaplotypeScore=255.1877;IndelType=I;MQ=54.17;MQ0=0;QD=62.52;SNPEFF_AMINO_ACID_CHANGE=-243E;SNPEFF_CODON_CHANGE=-/GAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_18_67863737_67863884;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:6,83:90:99:5627,253,0
18    67871343    rs3911730    A    C    2326.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=S126A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_67871322_67871499;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255674    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2360,178,0
18    67991722    rs2231561    C    T    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=5.91;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOCS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397942    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,139
18    67992684    rs1047657    C    T    958.78    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.53;DB;DP=61;Dels=0.0;FS=2.292;HRun=0;HaplotypeScore=2.7884;MQ=59.39;MQ0=0;MQRankSum=1.828;QD=15.72;ReadPosRankSum=1.649;SNPEFF_AMINO_ACID_CHANGE=R260;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_67991779_67997436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOCS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397942    GT:AD:DP:GQ:PL    0/1:27,33:61:99:989,0,687
18    70208898    rs1223504    G    T    102.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=25.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBLN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269503    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:135,12,0
18    70416367    rs35742923    C    CA    224.30    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.624;DB;DP=37;FS=0.0;HRun=7;HaplotypeScore=82.9478;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.842;QD=6.06;ReadPosRankSum=-1.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NETO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299430    GT:AD:DP:GQ:PL    0/1:27,10:37:99:263,0,567
18    70417396    rs922999    C    T    1241.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_AMINO_ACID_CHANGE=S480N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_70417297_70417855;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NETO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299430    GT:AD:DP:GQ:PL    1/1:0,35:35:96.28:1275,96,0
18    70423192    rs7244244    T    C    146.15    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=13.29;ReadPosRankSum=-2.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NETO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299430    GT:AD:DP:GQ:PL    0/1:5,6:11:99:176,0,167
18    70531818    rs948877    C    T    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NETO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299430    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:73,0,24
18    70532185    rs71924600    TA    T    155.16    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.506;DB;DP=38;FS=3.696;HRun=14;HaplotypeScore=122.5318;IndelType=D;MQ=61.1;MQ0=0;MQRankSum=0.895;QD=4.08;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NETO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299430    GT:AD:DP:GQ:PL    0/1:22,15:38:99:194,0,301
18    70532840    rs10164255    T    G    974.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NETO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327305    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1008,75,0
18    70532977    rs10163845    A    G    560.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NETO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327305    GT:AD:DP:GQ:PL    1/1:0,20:20:45.15:594,45,0
18    71803119    rs11391657    G    GA    498.71    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.149;DB;DP=50;FS=3.212;HRun=10;HaplotypeScore=111.2747;IndelType=I;MQ=59.29;MQ0=0;MQRankSum=0.352;QD=9.97;ReadPosRankSum=-0.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269500    GT:AD:DP:GQ:PL    0/1:29,21:50:99:538,0,434
18    71825719    rs17088880    A    G    211.24    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.337;DB;DP=17;Dels=0.0;FS=2.392;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.337;QD=12.43;ReadPosRankSum=0.914;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000169551    GT:AD:DP:GQ:PL    0/1:9,8:17:99:241,0,253
18    71920966    rs1790871    T    C    319    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340533    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:352,27,0
18    71930734    rs2032262    T    C    1601.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299438    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1635,123,0
18    71930758    rs2032263    G    A    1300.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=38.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299438    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1333,99,0
18    71930834    rs144732931    C    CTG    707.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=86.6838;IndelType=I;MQ=55.35;MQ0=0;QD=54.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299438    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:750,39,0
18    71930844    rs2032264    C    G    357.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=35.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299438    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:390,30,0
18    71930889    rs2032265    A    G    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299438    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
18    71987502    rs7237719    C    T    35.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.0;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    0/1:1,2:3:25.33:66,0,25
18    71989909    rs10164170    T    C    169.47    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=15.41;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    0/1:4,7:11:99:199,0,135
18    71990033    rs10163785    G    T    143.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=14.37;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,178
18    71996377    rs1541292    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
18    72011050    rs11151947    A    C    248.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.865;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=17.75;ReadPosRankSum=2.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    0/1:6,8:14:99:278,0,194
18    72020316    rs1362872    T    A    175.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
18    72020475    rs8093010    T    C    1717.18    PASS    AB=0.301;AC=1;AF=0.50;AN=2;BaseQRankSum=1.117;DB;DP=84;Dels=0.0;FS=1.159;HRun=0;HaplotypeScore=0.9894;MQ=59.17;MQ0=0;MQRankSum=0.799;QD=20.44;ReadPosRankSum=-0.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    0/1:25,58:84:99:1747,0,755
18    72021548    rs12608084    C    T    861.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DB;DP=70;Dels=0.0;FS=4.048;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.858;QD=12.31;ReadPosRankSum=-2.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    0/1:35,35:70:99:891,0,1199
18    72021717    rs12606060    T    C    1339.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.67;SNPEFF_AMINO_ACID_CHANGE=L676P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72021692_72021781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf63;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382675    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1373,108,0
18    72103646    rs2278155    A    G    73.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343998    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
18    72103782    rs2278154    T    C    247.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3894;MQ=50.39;MQ0=0;QD=19.0;SNPEFF_AMINO_ACID_CHANGE=Q106R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72102963_72103954;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400291    GT:AD:DP:GQ:PL    1/1:0,12:13:27.02:280,27,0
18    72109428    rs1013727    G    A    283.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343998    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:316,24,0
18    72113730    rs3861310    A    G    84.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343998    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:117,9,0
18    72114455    rs8087020    C    T    367.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.25;SNPEFF_AMINO_ACID_CHANGE=E88K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72113841_72114518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM69C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343998    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:401,30,0
18    72168486    rs8084410    T    C    155.49    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=22.21;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324262    GT:AD:DP:GQ:PL    0/1:2,5:7:59.58:185,0,60
18    72176083    rs2278161    T    C    255.18    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.607;DB;DP=27;Dels=0.0;FS=3.687;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.712;QD=9.45;ReadPosRankSum=-0.606;SNPEFF_AMINO_ACID_CHANGE=Y126H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72176075_72176163;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324262    GT:AD:DP:GQ:PL    0/1:16,11:27:99:285,0,523
18    72177989    rs79359709    G    T    380.28    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=23;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.194;QD=16.53;ReadPosRankSum=-1.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324262    GT:AD:DP:GQ:PL    0/1:8,15:23:99:410,0,253
18    72178368    rs2278157    A    T    88.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324262    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
18    72185972    rs890337    G    A    549.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324262    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:582,45,0
18    72186059    rs733062    G    A    828.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324262    GT:AD:DP:GQ:PL    1/1:1,22:23:66.18:862,66,0
18    72186175    rs5826329    T    TC    1050.62    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.515;DB;DP=80;FS=1.913;HRun=6;HaplotypeScore=221.5118;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=1.884;QD=13.13;ReadPosRankSum=0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324262    GT:AD:DP:GQ:PL    0/1:45,35:80:99:1090,0,970
18    72186404    rs2241508    G    A    220.50    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=16.96;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324262    GT:AD:DP:GQ:PL    0/1:5,8:13:99:250,0,163
18    72226455    rs12605490    A    T    640.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:674,48,0
18    72226504    rs12605520    C    T    378.87    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.589;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.065;QD=12.22;ReadPosRankSum=-1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    0/1:17,14:31:99:409,0,484
18    72226539    rs12607796    T    C    1111.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1144,87,0
18    72228124    rs4263028    A    G    5602.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3918;MQ=59.73;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=I113V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72228091_72228253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    1/1:0,170:170:99:5602,421,0
18    72228419    rs2881289    G    C    82.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
18    72229212    rs9967490    G    A    279.43    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.552;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.449;QD=14.71;ReadPosRankSum=0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    0/1:10,9:19:99:309,0,291
18    72234635    rs12960862    C    T    524.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.06;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0756;MQ=60.0;MQ0=0;MQRankSum=1.809;QD=10.93;ReadPosRankSum=-0.094;SNPEFF_AMINO_ACID_CHANGE=Y241;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72234468_72234668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    0/1:28,20:48:99:555,0,725
18    72238283    rs4892244    A    G    303.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:337,30,0
18    72245660    rs141377822    A    AG    576.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=2;HaplotypeScore=41.812;IndelType=I;MQ=61.26;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    1/1:3,14:17:42.14:619,42,0
18    72245760    rs6566814    A    G    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:67,6,0
18    72250762    rs11659237    T    C    742.49    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.282;DB;DP=50;Dels=0.0;FS=5.32;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.524;QD=14.85;ReadPosRankSum=0.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    0/1:26,24:50:99:772,0,865
18    72251035    rs67670142    G    A    54.77    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=4.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    0/1:8,3:11:84.77:85,0,293
18    72251181    rs8087111    T    C    34.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358821    GT:AD:DP:GQ:PL    1/1:0,2:3:6.01:66,6,0
18    72264397    rs7505285    A    C    104.65    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=11.63;ReadPosRankSum=0.729;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC116904.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382649    GT:AD:DP:GQ:PL    0/1:5,4:9:99:135,0,179
18    72264406    rs7505289    A    G    142.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.25;ReadPosRankSum=-0.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC116904.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382649    GT:AD:DP:GQ:PL    0/1:5,5:10:99:172,0,172
18    72264473    rs7505334    C    T    284.31    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.812;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.249;QD=12.92;ReadPosRankSum=-1.528;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC116904.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382649    GT:AD:DP:GQ:PL    0/1:9,13:22:99:314,0,273
18    72264639    rs28476707    C    T    53.32    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=3.81;ReadPosRankSum=-0.778;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC116904.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382649    GT:AD:DP:GQ:PL    0/1:11,3:14:83.32:83,0,281
18    72342869    rs3794944    T    G    309.64    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.427;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.4128;MQ=57.2;MQ0=0;MQRankSum=-0.977;QD=9.68;ReadPosRankSum=0.894;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    0/1:17,15:32:99:340,0,529
18    72343008    rs7243081    T    C    3558    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=D11;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72342919_72347662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3558,271,0
18    72344238    rs17817969    C    T    2173.01    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=3.217;DB;DP=155;Dels=0.0;FS=1.261;HRun=1;HaplotypeScore=3.914;MQ=59.7;MQ0=0;MQRankSum=-0.027;QD=14.02;ReadPosRankSum=0.681;SNPEFF_AMINO_ACID_CHANGE=L421;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72342919_72347662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    0/1:77,78:155:99:2203,0,2152
18    72344509    rs7227263    G    A    1662.50    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=4.977;DB;DP=113;Dels=0.0;FS=1.737;HRun=0;HaplotypeScore=1.5616;MQ=59.8;MQ0=0;MQRankSum=-1.22;QD=14.71;ReadPosRankSum=-0.221;SNPEFF_AMINO_ACID_CHANGE=G512R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72342919_72347662;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    0/1:59,54:113:99:1692,0,1620
18    72344553    rs7227391    G    A    2125.66    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=5.861;DB;DP=144;Dels=0.0;FS=5.71;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.307;QD=14.76;ReadPosRankSum=1.64;SNPEFF_AMINO_ACID_CHANGE=T526;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72342919_72347662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    0/1:74,69:144:99:2156,0,2090
18    72347482    rs12327359    T    C    2203.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.226;DB;DP=70;Dels=0.0;FS=3.074;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.23;QD=31.48;ReadPosRankSum=0.377;SNPEFF_AMINO_ACID_CHANGE=L1503;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72342919_72347662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    1/1:1,69:70:99:2237,141,0
18    72347748    rs35713716    C    G    809.57    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=4.69;DB;DP=51;Dels=0.0;FS=1.837;HRun=0;HaplotypeScore=0.5784;MQ=59.55;MQ0=0;MQRankSum=-0.631;QD=15.87;ReadPosRankSum=-0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    0/1:24,27:51:99:840,0,648
18    72493314    rs7228438    G    T    209.86    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=13.99;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    0/1:8,7:15:99:240,0,282
18    72593118    rs2628126    C    T    801.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:835,63,0
18    72593197    rs12953433    G    A    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
18    72774889    rs8093688    T    C    90.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF407;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299687    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
18    72914280    rs7230037    G    A    1091.24    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=2.113;DB;DP=73;Dels=0.0;FS=4.273;HRun=0;HaplotypeScore=2.8512;MQ=59.68;MQ0=0;MQRankSum=0.579;QD=14.95;ReadPosRankSum=1.164;SNPEFF_AMINO_ACID_CHANGE=N75;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_72907063_72914295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZADH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322342    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1121,0,1061
18    73130653    rs3214645    G    GT    217.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=16;FS=0.0;HRun=9;HaplotypeScore=49.3598;IndelType=I;MQ=47.12;MQ0=0;MQRankSum=-1.067;QD=13.6;ReadPosRankSum=-0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382638    GT:AD:DP:GQ:PL    0/1:8,8:16:88.18:257,0,88
18    73130705    rs34120062    AT    A    472.04    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=3.612;DB;DP=41;FS=1.711;HRun=9;HaplotypeScore=131.7625;IndelType=D;MQ=55.73;MQ0=0;MQRankSum=-0.728;QD=11.51;ReadPosRankSum=-0.814;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C18orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382638    GT:AD:DP:GQ:PL    0/1:18,23:41:99:511,0,437
18    74074440    .    C    T    678.80    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=1.045;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=12.81;ReadPosRankSum=0.438;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF516;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524431    GT:AD:DP:GQ:PL    0/1:29,24:53:99:709,0,883
18    74074707    rs11150946    C    T    112.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.76;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF516;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443185    GT:AD:DP:GQ:PL    0/1:2,4:6:65.23:143,0,65
18    74082584    rs9676093    G    A    316.68    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.445;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.372;QD=16.67;ReadPosRankSum=-0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF516;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443185    GT:AD:DP:GQ:PL    0/1:8,11:19:99:347,0,275
18    74090957    rs77457372    CG    C    753.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=7;HaplotypeScore=79.917;IndelType=D;MQ=60.37;MQ0=0;QD=25.98;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_18_74090810_74090963;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF516;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000443185    GT:AD:DP:GQ:PL    1/1:4,25:29:78.18:796,78,0
18    74092366    rs12970367    G    A    311.41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.485;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=57.77;MQ0=0;MQRankSum=-1.306;QD=14.83;ReadPosRankSum=0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF516;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443185    GT:AD:DP:GQ:PL    0/1:7,14:21:99:341,0,240
18    74591992    rs113459320    G    GT    170.23    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=0.91;DB;DP=18;FS=0.0;HRun=13;HaplotypeScore=88.1583;IndelType=I;MQ=50.27;MQ0=0;MQRankSum=-0.424;QD=9.46;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    0/1:7,7:18:37.36:209,0,37
18    74593584    rs937823    G    A    198.23    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=28.32;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    0/1:1,6:7:21.16:228,0,21
18    74606855    rs552139    A    G    485.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:518,39,0
18    74610875    rs609684    G    A    609.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:642,48,0
18    74611127    rs608433    A    G    1782.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=37.92;SNPEFF_AMINO_ACID_CHANGE=I613V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_74610975_74611178;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1815,132,0
18    74617498    rs34913597    CAAGAAAAAAAAAAAAAAAAAAAAAAA    C    1317.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=226.6209;IndelType=D;MQ=37.32;MQ0=0;QD=131.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:3,7:10:21.01:1360,21,0
18    74622529    rs684192    A    G    529.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:563,42,0
18    74627454    rs35984151    CT    C    67.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=12;FS=0.0;HRun=14;HaplotypeScore=86.5528;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=-0.747;QD=5.66;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    0/1:3,7:12:4.81:106,0,5
18    74627577    rs537945    C    T    1749.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1782,129,0
18    74637067    rs3752075    T    C    1700.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.28;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1733,129,0
18    74648107    rs34003753    CGT    C    436.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=46.1632;IndelType=D;MQ=60.9;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:1,11:12:33.11:478,33,0
18    74648536    rs630229    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320610    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
18    74671768    rs470403    T    C    1773.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DB;DP=52;Dels=0.0;FS=4.065;HRun=0;HaplotypeScore=0.9867;MQ=58.66;MQ0=0;MQRankSum=-0.6;QD=34.1;ReadPosRankSum=1.466;SNPEFF_AMINO_ACID_CHANGE=H1744;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_74671643_74671772;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:1,51:52:99:1806,117,0
18    74671933    rs470402    T    C    136.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=17.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:169,15,0
18    74680114    rs17575711    T    C    1070.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DB;DP=29;Dels=0.0;FS=8.603;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.657;QD=36.93;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:1,28:29:49.48:1104,49,0
18    74680208    rs73968242    C    T    1608.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_AMINO_ACID_CHANGE=D1817;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_74680171_74682680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1642,120,0
18    74680259    rs657066    C    T    1779.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.06;SNPEFF_AMINO_ACID_CHANGE=A1834;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_74680171_74682680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1812,132,0
18    74680369    rs470774    C    T    1041.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1074,78,0
18    74680470    rs470224    A    G    205.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.29;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF236;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253159    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
18    74779614    rs4890887    C    A    359.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355994    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:393,33,0
18    74779866    rs4890888    G    A    703.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355994    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:737,57,0
18    74817006    rs10631018    A    AATT    293.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=17.6061;IndelType=I;MQ=55.21;MQ0=0;QD=58.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355994    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:335,15,0
18    74962645    rs5374    T    C    272.56    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.433;QD=15.14;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=G47;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_74962505_74963170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299727    GT:AD:DP:GQ:PL    0/1:8,10:18:99:303,0,211
18    74968327    rs2717162    T    C    76.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.79;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299727    GT:AD:DP:GQ:PL    0/1:2,4:6:63.53:107,0,64
18    74980809    rs5376    G    A    3513.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_AMINO_ACID_CHANGE=S334N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_74980541_74980858;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299727    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3513,265,0
18    76753588    rs7240860    A    G    352.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.03;SNPEFF_AMINO_ACID_CHANGE=T265A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_76753057_76754905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543056    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:385,30,0
18    76753768    rs2447437    C    G    80.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=16.16;SNPEFF_AMINO_ACID_CHANGE=L325V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_76753057_76754905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543056    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:113,9,0
18    76754466    rs2472644    C    T    643.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=56.62;MQ0=0;MQRankSum=-0.578;QD=30.66;ReadPosRankSum=-0.083;SNPEFF_AMINO_ACID_CHANGE=Y557;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_76753057_76754905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543056    GT:AD:DP:GQ:PL    1/1:1,20:21:30.50:677,30,0
18    77067000    rs59800543    T    G    248.54    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=8.02;ReadPosRankSum=-0.62;SNPEFF_AMINO_ACID_CHANGE=A513;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_77066986_77067234;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307671    GT:AD:DP:GQ:PL    0/1:18,13:31:99:279,0,602
18    77102423    rs11659393    G    T    446.04    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.856;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.273;QD=13.52;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307671    GT:AD:DP:GQ:PL    0/1:19,14:33:99:476,0,671
18    77102497    rs4799043    T    A    59.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=9.96;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307671    GT:AD:DP:GQ:PL    0/1:2,4:6:66.83:90,0,67
18    77107530    rs7239401    T    C    43.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307671    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:74,0,30
18    77107934    rs9965202    C    T    1033.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307671    GT:AD:DP:GQ:PL    1/1:0,29:29:78.26:1066,78,0
18    77108248    rs66709519    GAA    G    293.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DB;DP=36;FS=0.0;HRun=21;HaplotypeScore=337.1968;IndelType=D;MQ=49.97;MQ0=0;MQRankSum=-0.578;QD=8.16;ReadPosRankSum=-1.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307671    GT:AD:DP:GQ:PL    1/1:18,11:36:57.95:336,58,0
18    77132755    rs2271392    T    G    256.98    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=19;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.9973;MQ=58.78;MQ0=0;MQRankSum=0.133;QD=13.53;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307671    GT:AD:DP:GQ:PL    0/1:9,10:19:99:287,0,258
18    77132793    rs3817178    G    A    391.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.203;DB;DP=26;Dels=0.0;FS=6.956;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=-0.68;QD=15.05;ReadPosRankSum=-1.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307671    GT:AD:DP:GQ:PL    0/1:12,14:26:99:421,0,361
18    77135472    rs2280058    A    G    483.33    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.19;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8893;MQ=59.54;MQ0=0;MQRankSum=-0.092;QD=11.79;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490210    GT:AD:DP:GQ:PL    0/1:22,19:41:99:513,0,661
18    77137202    rs1110784    A    G    2098.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9632;MQ=58.95;MQ0=0;QD=31.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490210    GT:AD:DP:GQ:PL    1/1:0,65:66:99:2131,163,0
18    77170006    rs182507    C    T    2200.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5518;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253506    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2234,171,0
18    77170542    rs55863211    C    T    826.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=Y53;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_77170400_77171501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397794    GT:AD:DP:GQ:PL    1/1:0,24:24:69.18:860,69,0
18    77171061    rs2230112    T    G    641.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=P226;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_77170400_77171501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397794    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:674,54,0
18    77210902    rs680802    C    T    1449.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=59.51;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253506    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1483,117,0
18    77211195    rs160191    G    T    674.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253506    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:708,54,0
18    77246406    rs754093    T    G    3815.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.3;MQ0=0;MQRankSum=1.175;QD=33.18;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=C279G;SNPEFF_CODON_CHANGE=Tgt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_77246248_77246630;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397790    GT:AD:DP:GQ:PL    1/1:1,114:115:99:3816,289,0
18    77246978    rs75868093    G    A    528.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427363    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:561,45,0
18    77287385    rs451691    T    C    169.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253506    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
18    77455871    rs558700    C    T    176.29    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=19.59;ReadPosRankSum=0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    0/1:2,7:9:57.69:206,0,58
18    77456172    rs655609    A    G    120.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
18    77456223    rs55781531    G    A    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
18    77458037    rs2242174    T    C    395.09    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.132;DB;DP=20;Dels=0.0;FS=8.929;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.535;QD=19.75;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    0/1:6,14:20:99:425,0,178
18    77464874    rs35925235    C    T    566.12    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.88;DB;DP=49;Dels=0.0;FS=1.254;HRun=0;HaplotypeScore=0.734;MQ=58.58;MQ0=0;MQRankSum=0.749;QD=11.55;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=H243;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_77464767_77464917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    0/1:21,28:49:99:596,0,525
18    77470122    rs517479    A    G    90.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
18    77473127    rs2279103    C    T    476.15    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=3.647;DB;DP=23;Dels=0.0;FS=2.793;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.613;QD=20.7;ReadPosRankSum=0.097;SNPEFF_AMINO_ACID_CHANGE=T340M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_77472972_77473138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    0/1:8,15:23:99:506,0,221
18    77477515    rs8084175    C    T    128.35    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.077;DB;DP=19;Dels=0.0;FS=2.452;HRun=0;HaplotypeScore=0.7887;MQ=58.78;MQ0=0;MQRankSum=-0.14;QD=6.76;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    0/1:13,6:19:99:158,0,396
18    77489169    rs9956086    G    A    785.01    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.165;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;MQRankSum=1.214;QD=15.7;ReadPosRankSum=0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    0/1:24,26:50:99:815,0,860
18    77513465    rs8086389    G    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:74,0,29
18    77513721    rs626169    T    C    476.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_AMINO_ACID_CHANGE=D939;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_77513652_77514510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299543    GT:AD:DP:GQ:PL    1/1:0,17:17:42.11:509,42,0
18    77513841    rs76088733    G    A    31.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.56;ReadPosRankSum=0.198;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTDP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000075430    GT:AD:DP:GQ:PL    0/1:5,2:7:61.92:62,0,185
18    77623611    rs62103176    G    C    188.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=26.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316249    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:221,18,0
18    77679503    rs12607405    G    A    52.53    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9648;MQ=29.0;MQ0=0;MQRankSum=0.727;QD=13.13;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    0/1:1,3:4:21.41:83,0,21
18    77679519    rs12607407    G    A    88.73    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=0.731;QD=17.75;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    0/1:1,4:5:18.39:119,0,18
18    77679534    rs12607428    G    C    58.29    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=0.727;QD=14.57;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:88,0,21
18    77679560    rs12607429    G    T    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    1/1:0,3:4:9.02:100,9,0
18    77679579    rs12605460    A    G    34.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
18    77703299    rs8095510    C    T    1982.50    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=153;Dels=0.0;FS=2.932;HRun=0;HaplotypeScore=1.5592;MQ=59.85;MQ0=0;MQRankSum=-0.3;QD=12.96;ReadPosRankSum=0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    0/1:84,69:153:99:2012,0,2354
18    77703476    rs2277723    A    G    1872.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.302;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.962;QD=29.72;ReadPosRankSum=-0.302;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    1/1:1,62:63:99:1906,117,0
18    77703935    rs6506791    C    A    162.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
18    77710618    rs72984244    C    T    248.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PQLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351365    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
18    77733860    rs7245133    C    T    783.42    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.254;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=-1.1;QD=12.05;ReadPosRankSum=0.451;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451882    GT:AD:DP:GQ:PL    0/1:35,30:65:99:813,0,940
18    77733976    rs4799114    A    G    258.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSBP1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451882    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:291,21,0
18    77736735    rs4799116    T    C    1416.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269601    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1449,114,0
18    77737397    rs11081576    C    T    168.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269601    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
18    77794810    rs12964779    G    A    85.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262197    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
18    77796574    rs12957601    C    T    398.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262197    GT:AD:DP:GQ:PL    1/1:0,18:18:36.11:432,36,0
18    77797321    rs748337    C    T    1718.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.71;MQ0=0;MQRankSum=1.54;QD=31.82;ReadPosRankSum=1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262197    GT:AD:DP:GQ:PL    1/1:1,53:54:99:1751,132,0
18    77798449    rs71986344    TTGTC    T    1734.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=309.9197;IndelType=D;MQ=52.68;MQ0=0;QD=52.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262197    GT:AD:DP:GQ:PL    1/1:0,33:33:93.32:1777,93,0
18    77798461    rs3744870    C    A    924.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=51.87;MQ0=0;QD=26.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262197    GT:AD:DP:GQ:PL    1/1:0,34:35:81.24:957,81,0
18    77802297    rs66538525    C    T    207.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262197    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
18    77805715    rs3744871    G    A    930.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBFA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262197    GT:AD:DP:GQ:PL    1/1:0,25:25:75.23:964,75,0
18    77894844    rs3744877    G    A    1002.60    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=3.577;DB;DP=73;Dels=0.0;FS=6.68;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.607;QD=13.73;ReadPosRankSum=-0.514;SNPEFF_AMINO_ACID_CHANGE=P516;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_18_77893495_77898226;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADNP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262198    GT:AD:DP:GQ:PL    0/1:41,32:73:99:1033,0,1055
18    77896699    rs34425382    C    CA    61.48    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=1.573;DB;DP=17;FS=0.0;HRun=14;HaplotypeScore=157.6997;IndelType=I;MQ=53.9;MQ0=0;MQRankSum=-0.922;QD=3.62;ReadPosRankSum=-1.464;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADNP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262198    GT:AD:DP:GQ:PL    0/1:9,6:17:99:101,0,132
19    104827    .    T    C    306.35    MQFilter40    AB=0.716;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.074;DP=74;Dels=0.0;FS=1.359;HRun=0;HaplotypeScore=0.0;MQ=27.64;MQ0=23;MQRankSum=0.618;QD=4.14;ReadPosRankSum=1.074;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR4F17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442916    GT:AD:DP:GQ:PL    0/1:53,21:74:99:336,0,898
19    281360    rs7815    C    T    283.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269812    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:317,24,0
19    312020    rs8104600    A    G    79.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.81;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264819    GT:AD:DP:GQ:PL    0/1:2,3:5:66.72:109,0,67
19    312143    rs10416918    T    C    148.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.23;MQ0=0;QD=21.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264819    GT:AD:DP:GQ:PL    1/1:0,6:7:15.04:182,15,0
19    325481    rs62103705    C    T    42.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264819    GT:AD:DP:GQ:PL    0/1:1,2:3:21.56:72,0,22
19    326481    rs4897949    G    A    1018.32    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.094;DB;DP=70;Dels=0.0;FS=3.425;HRun=0;HaplotypeScore=0.8321;MQ=58.8;MQ0=0;MQRankSum=-1.002;QD=14.55;ReadPosRankSum=0.774;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264819    GT:AD:DP:GQ:PL    0/1:36,34:70:99:1048,0,1003
19    327260    rs75198240    T    TA    142.35    QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.49;DB;DP=219;FS=3.357;HRun=16;HaplotypeScore=1302.654;IndelType=I;MQ=53.88;MQ0=0;MQRankSum=1.031;QD=0.65;ReadPosRankSum=0.984;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264819    GT:AD:DP:GQ:PL    0/1:172,29:219:99:181,0,1342
19    327998    rs2305113    G    T    255.64    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=16;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.9665;MQ=58.83;MQ0=0;MQRankSum=2.021;QD=15.98;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264819    GT:AD:DP:GQ:PL    0/1:5,11:16:99:286,0,168
19    335946    rs3816322    G    A    137.01    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.198;QD=19.57;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264819    GT:AD:DP:GQ:PL    0/1:2,5:7:43.58:167,0,44
19    366846    rs583307    T    C    122.43    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7329;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.49;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528213    GT:AD:DP:GQ:PL    0/1:1,4:5:20.20:152,0,20
19    367313    rs585487    G    A    183.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=22.98;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    0/1:2,6:8:60.33:214,0,60
19    371369    .    GGT    G    178.89    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DP=30;FS=0.0;HRun=0;HaplotypeScore=195.1559;IndelType=D;MQ=59.55;MQ0=0;MQRankSum=-0.177;QD=5.96;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    0/1:22,6:30:93.86:218,0,94
19    372551    rs652081    A    G    211.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:244,21,0
19    372661    rs2303810    C    A    369.15    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=37;Dels=0.0;FS=7.681;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=1.194;QD=9.98;ReadPosRankSum=-1.226;SNPEFF_AMINO_ACID_CHANGE=R178I;SNPEFF_CODON_CHANGE=aGa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_372631_372700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346878    GT:AD:DP:GQ:PL    0/1:21,16:37:99:399,0,521
19    372737    rs2303811    T    C    173.24    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.671;DB;DP=23;Dels=0.0;FS=4.434;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.334;QD=7.53;ReadPosRankSum=-1.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    0/1:13,10:23:99:203,0,402
19    372775    rs2303812    G    A    103.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.361;QD=10.31;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    0/1:5,5:10:99:133,0,146
19    372867    rs671915    T    C    122.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=17.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:155,12,0
19    374016    rs2303815    G    A    102.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.05;MQ0=0;MQRankSum=1.134;QD=8.52;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    0/1:8,4:12:99:132,0,225
19    374453    rs3815960    T    C    240.81    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.99;MQ0=0;MQRankSum=1.67;QD=10.95;ReadPosRankSum=0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    0/1:9,13:22:99:271,0,280
19    374492    rs10410345    G    C    283.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:316,24,0
19    375493    rs1651874    A    G    156.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THEG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342640    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:189,15,0
19    407900    rs10411998    A    G    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=16.39;SNPEFF_AMINO_ACID_CHANGE=A154;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_405443_408401;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2CD4C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332235    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
19    425290    rs73916977    G    A    232.28    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=21.12;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264554    GT:AD:DP:GQ:PL    0/1:3,8:11:83.80:262,0,84
19    426974    rs66783016    C    T    54    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.003;DB;DP=14;Dels=0.0;FS=6.421;HRun=0;HaplotypeScore=0.0;MQ=51.5;MQ0=0;MQRankSum=-1.466;QD=3.86;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264554    GT:AD:DP:GQ:PL    0/1:10,4:14:83.99:84,0,244
19    463810    rs139096218    GC    G    151.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=6;HaplotypeScore=24.2751;IndelType=D;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264554    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:193,18,0
19    463890    rs148518065    G    A    210.46    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=15;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.855;QD=14.03;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=T239M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_463344_464364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF3L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382696    GT:AD:DP:GQ:PL    0/1:7,8:15:99:240,0,159
19    475002    rs10425621    T    C    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODF3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315489    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
19    496652    rs114840310    A    G    31.17    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.2;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215637    GT:AD:DP:GQ:PL    0/1:4,2:6:61.16:61,0,147
19    498212    rs12461640    A    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215637    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
19    501580    rs62130831    C    T    209.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215637    GT:AD:DP:GQ:PL    1/1:0,7:8:18.06:242,18,0
19    501701    .    G    GACACCACCTCCCCGGAGCCTCCCA    967.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DP=27;FS=0.0;HRun=0;HaplotypeScore=395.1393;IndelType=I;MQ=58.43;MQ0=0;MQRankSum=1.504;QD=35.84;ReadPosRankSum=1.504;SNPEFF_AMINO_ACID_CHANGE=D234DTTSPEPPN;SNPEFF_CODON_CHANGE=gac/gACACCACCTCCCCGGAGCCTCCCAac;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_19_501669_501929;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADCAM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215637    GT:AD:DP:GQ:PL    1/1:8,12:27:40.01:1010,40,0
19    501786    rs77264553    C    A    84.74    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;MQRankSum=0.536;QD=6.52;ReadPosRankSum=-1.932;SNPEFF_AMINO_ACID_CHANGE=P262Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_501669_501929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADCAM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215637    GT:AD:DP:GQ:PL    0/1:4,9:13:9.19:114,0,9
19    501976    rs117914445    C    G    40.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215637    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
19    504830    rs7246543    C    G    415.91    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=34;Dels=0.0;FS=10.976;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.45;QD=12.23;ReadPosRankSum=0.378;SNPEFF_AMINO_ACID_CHANGE=T156;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_504745_504965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADCAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382683    GT:AD:DP:GQ:PL    0/1:18,16:34:99:446,0,493
19    507450    rs7246920    G    T    42.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=7.01;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MADCAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215637    GT:AD:DP:GQ:PL    0/1:3,3:6:72.03:72,0,72
19    535621    rs10409849    C    G    98.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=24.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215574    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:131,12,0
19    535634    rs10415326    G    A    229.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215574    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:263,21,0
19    536046    .    C    CCCGGGGCGCTGGGAGCCTCACGTCCTCGTCCTTCCGGGAT    766.19    PASS    AC=2;AF=1.00;AN=2;DP=31;FS=0.0;HRun=0;HaplotypeScore=681.0253;IndelType=I;MQ=63.4;MQ0=0;QD=24.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215574    GT:AD:DP:GQ:PL    1/1:21,10:31:30.10:808,30,0
19    536437    rs2396295    A    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215574    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    536536    rs892201    C    T    79.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215574    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:112,9,0
19    536900    rs892204    G    A    318.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215574    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:351,27,0
19    547224    rs4919846    A    G    504.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=25.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    1/1:0,20:20:45.11:537,45,0
19    547491    rs2070795    C    T    101.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.881;QD=11.24;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    0/1:5,4:9:99:131,0,183
19    547555    rs2070796    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    547561    rs2070797    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    548865    rs12972174    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    549041    rs150398893    C    T    65.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=8.24;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=G156;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_548922_549185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    0/1:4,4:8:95.88:96,0,99
19    549492    rs1599884    A    G    140.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:173,15,0
19    549595    rs1599883    T    C    250.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:284,24,0
19    549678    rs1599882    A    G    1153.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=28.84;SNPEFF_AMINO_ACID_CHANGE=R221G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_549630_549919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZMM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264553    GT:AD:DP:GQ:PL    1/1:0,40:40:96.27:1187,96,0
19    582253    rs4919862    T    C    297.30    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.614;QD=9.29;ReadPosRankSum=-1.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333511    GT:AD:DP:GQ:PL    0/1:19,13:32:99:327,0,551
19    603513    rs4919815    C    T    108.46    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.769;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.43;MQ0=0;MQRankSum=0.278;QD=9.04;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:7,5:12:99:138,0,173
19    604022    rs10409268    A    G    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:1,2:3:25.32:74,0,25
19    604988    rs113541645    G    A    151.27    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.61;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:2,5:7:49.42:181,0,49
19    605171    rs12981860    T    C    478.54    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.153;DB;DP=29;Dels=0.0;FS=12.63;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=2.215;QD=16.5;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=P389;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_605061_605222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:13,16:29:99:509,0,372
19    613307    rs2301778    C    T    183.85    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=25;Dels=0.0;FS=7.402;HRun=0;HaplotypeScore=0.0;MQ=57.89;MQ0=0;MQRankSum=-0.954;QD=7.35;ReadPosRankSum=-0.596;SNPEFF_AMINO_ACID_CHANGE=A548;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_613248_613488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:16,9:25:99:214,0,498
19    613506    .    GCGCCTGGAGGGGGAGGGGGCA    G    1041.92    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DP=18;FS=3.31;HRun=0;HaplotypeScore=316.9567;IndelType=D;MQ=45.14;MQ0=0;MQRankSum=-3.153;QD=54.84;ReadPosRankSum=0.872;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:11,8:18:99:1081,0,1797
19    613560    rs149420100    C    T    41.01    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.11;MQ0=0;MQRankSum=1.683;QD=4.56;ReadPosRankSum=2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:6,3:9:21.56:71,0,22
19    613827    rs143893727    AC    A    740.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=8;HaplotypeScore=124.2775;IndelType=D;MQ=59.2;MQ0=0;QD=25.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    1/1:2,27:29:81.12:782,81,0
19    613898    rs1054786    T    C    1360.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.5;MQ0=0;QD=27.2;SNPEFF_AMINO_ACID_CHANGE=A624;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_613852_614016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1393,117,0
19    617195    rs11670098    C    T    397.67    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.045;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8773;MQ=59.23;MQ0=0;MQRankSum=0.168;QD=13.26;ReadPosRankSum=-1.846;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:11,19:30:99:428,0,325
19    617205    rs2072122    T    C    608.88    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=1.996;DB;DP=37;Dels=0.0;FS=4.478;HRun=2;HaplotypeScore=0.8941;MQ=59.38;MQ0=0;MQRankSum=0.73;QD=16.46;ReadPosRankSum=-0.081;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:14,23:37:99:639,0,384
19    617614    rs41551212    G    A    346.39    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.046;QD=12.37;ReadPosRankSum=0.415;SNPEFF_AMINO_ACID_CHANGE=I1179;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_617570_617655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:15,13:28:99:376,0,466
19    617963    rs41546612    T    G    101.82    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.399;MQ=57.66;MQ0=0;MQRankSum=0.361;QD=10.18;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:4,5:10:99:132,0,130
19    618854    rs11668261    G    A    38.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:69,0,31
19    619574    rs10853990    T    G    541.56    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.243;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=0.555;QD=13.21;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:18,23:41:99:572,0,470
19    619772    rs11669381    G    C    795.55    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.809;DB;DP=65;Dels=0.0;FS=2.46;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.654;QD=12.24;ReadPosRankSum=0.802;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251287    GT:AD:DP:GQ:PL    0/1:30,35:65:99:826,0,854
19    621063    rs76890343    A    G    176.35    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=10;Dels=0.0;FS=3.802;HRun=3;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.067;QD=17.63;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=L879;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_621058_621846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:3,7:10:23.70:206,0,24
19    621070    rs77809401    G    A    189.04    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.28;MQ0=0;MQRankSum=0.296;QD=17.19;ReadPosRankSum=0.895;SNPEFF_AMINO_ACID_CHANGE=D876;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_621058_621846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:4,7:11:57.67:219,0,58
19    624683    rs2285853    A    G    226.59    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.527;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.778;QD=8.39;ReadPosRankSum=-1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:17,10:27:99:257,0,603
19    625198    rs1056766    A    G    660.48    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.022;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=56.06;MQ0=0;MQRankSum=0.354;QD=15.36;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=T293;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_625124_625254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:19,23:43:99:690,0,490
19    629438    rs2283576    G    C    1174.42    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.728;DB;DP=79;Dels=0.0;FS=5.604;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.773;QD=14.87;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:43,36:79:99:1204,0,1390
19    629503    rs2283577    G    A    1684.41    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=5.722;DB;DP=129;Dels=0.0;FS=1.442;HRun=1;HaplotypeScore=0.7887;MQ=59.35;MQ0=0;MQRankSum=-1.127;QD=13.06;ReadPosRankSum=0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:70,59:129:99:1714,0,1888
19    629846    rs11550305    G    A    32.58    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=7;Dels=0.0;FS=10.0;HRun=0;HaplotypeScore=0.0;MQ=55.84;MQ0=0;MQRankSum=1.231;QD=4.65;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_629540_630168;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:5,2:7:62.58:63,0,108
19    633381    rs11669858    A    G    59.88    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=11;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-0.361;QD=5.44;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLRMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215591    GT:AD:DP:GQ:PL    0/1:5,6:11:89.87:90,0,143
19    641215    rs7246140    T    C    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_AMINO_ACID_CHANGE=L13P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_641178_641268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000166133    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
19    646891    rs10403235    G    A    710.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000166133    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:744,57,0
19    647039    rs2074460    T    C    126.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=18.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000166133    GT:AD:DP:GQ:PL    1/1:0,7:7:15.01:159,15,0
19    652739    rs12973146    C    G    98.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.33;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF126;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292363    GT:AD:DP:GQ:PL    0/1:4,4:8:99:129,0,140
19    652948    rs10153505    T    G    93.43    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=7.19;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF126;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292363    GT:AD:DP:GQ:PL    0/1:9,4:13:99:123,0,311
19    686715    rs8105856    T    G    36.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000166139    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
19    686791    rs10439152    C    T    163.80    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.38;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSTL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000166139    GT:AD:DP:GQ:PL    0/1:4,6:10:99:194,0,136
19    687142    rs8102982    G    A    264.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_AMINO_ACID_CHANGE=P143L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_686925_687188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329267    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:298,21,0
19    691909    rs4375794    T    C    142.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=17.87;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=T110;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_691858_692002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRSS57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329267    GT:AD:DP:GQ:PL    0/1:2,6:8:52.25:173,0,52
19    727754    rs67650419    C    T    54.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264560    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
19    731055    rs10405821    G    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264560    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    731077    rs10405836    G    C    70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264560    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:102,9,0
19    731078    rs2074355    G    T    70.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264560    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:102,9,0
19    731144    rs1050457    A    G    120.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=24.12;SNPEFF_AMINO_ACID_CHANGE=T107A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_731095_731245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264560    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:153,12,0
19    746712    rs10421265    C    T    215.82    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.747;QD=26.98;ReadPosRankSum=0.747;SNPEFF_AMINO_ACID_CHANGE=A219;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_746285_747298;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538247    GT:AD:DP:GQ:PL    0/1:1,7:8:5.55:245,0,6
19    756985    rs8110536    T    G    66.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=11.07;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=P13;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_756890_758726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215582    GT:AD:DP:GQ:PL    0/1:2,4:6:68.42:96,0,68
19    757399    rs3746172    A    C    146.48    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=24.41;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=A151;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_756890_758726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215582    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:176,0,23
19    757412    rs3746173    A    G    204.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.17;SNPEFF_AMINO_ACID_CHANGE=S156G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_756890_758726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215582    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:237,21,0
19    757606    rs3746174    T    C    500.43    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=1.485;DB;DP=29;Dels=0.0;FS=1.623;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.448;QD=17.26;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=P220;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_756890_758726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215582    GT:AD:DP:GQ:PL    0/1:9,20:29:99:530,0,252
19    757752    rs35384259    G    A    292.07    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.358;DB;DP=19;Dels=0.0;FS=8.193;HRun=1;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.14;QD=15.37;ReadPosRankSum=-0.983;SNPEFF_AMINO_ACID_CHANGE=S269N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_756890_758726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215582    GT:AD:DP:GQ:PL    0/1:6,13:19:99:322,0,202
19    797517    rs10414379    G    C    163.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:196,15,0
19    799342    rs8100561    G    C    1975.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=29.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2008,177,0
19    799392    rs62131332    C    T    869.06    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.658;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.204;QD=10.22;ReadPosRankSum=-0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:53,32:85:99:899,0,1625
19    803945    rs10420407    G    A    149.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.0;QD=15.0;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:4,6:10:99:180,0,106
19    804013    rs351982    A    G    359.67    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.733;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.17;MQ0=0;MQRankSum=0.464;QD=12.85;ReadPosRankSum=-0.854;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:12,16:28:99:390,0,357
19    804079    rs351981    T    C    531.63    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.385;DB;DP=32;Dels=0.0;FS=3.256;HRun=0;HaplotypeScore=0.9983;MQ=59.28;MQ0=0;MQRankSum=-0.264;QD=16.61;ReadPosRankSum=0.426;SNPEFF_AMINO_ACID_CHANGE=S53;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_804036_804208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:13,19:32:99:562,0,354
19    804327    rs10420953    C    T    345.15    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=36;Dels=0.0;FS=3.041;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.496;QD=9.59;ReadPosRankSum=1.169;SNPEFF_AMINO_ACID_CHANGE=N108;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_804292_804438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:22,14:36:99:375,0,664
19    804456    rs351980    G    A    200.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.053;QD=11.15;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:9,9:18:99:231,0,242
19    804612    rs4986235    C    T    314.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.659;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.512;QD=11.22;ReadPosRankSum=-0.317;SNPEFF_AMINO_ACID_CHANGE=D172;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_804532_804702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:16,12:28:99:344,0,455
19    804959    rs10422347    C    T    654.69    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.508;DB;DP=37;Dels=0.0;FS=10.481;HRun=0;HaplotypeScore=1.7262;MQ=58.11;MQ0=0;MQRankSum=-0.225;QD=17.69;ReadPosRankSum=0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:15,21:37:99:685,0,440
19    806634    rs351977    G    T    78.95    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.74;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:109,0,29
19    806673    rs351976    T    C    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
19    808824    rs62131353    C    T    255.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.664;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.925;QD=21.28;ReadPosRankSum=0.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006273.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300947    GT:AD:DP:GQ:PL    0/1:3,9:12:86.22:285,0,86
19    810445    rs10426392    C    T    108.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.06;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006273.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300947    GT:AD:DP:GQ:PL    0/1:2,4:6:67.18:138,0,67
19    813220    rs351994    T    C    232.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.21;SNPEFF_AMINO_ACID_CHANGE=T503A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_812518_813895;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006273.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000520876    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:265,21,0
19    814907    rs1540615    A    G    215.41    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=19;Dels=0.0;FS=6.864;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.818;QD=11.34;ReadPosRankSum=-1.876;SNPEFF_AMINO_ACID_CHANGE=I193T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_814886_815081;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006273.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359894    GT:AD:DP:GQ:PL    0/1:8,11:19:99:245,0,256
19    815086    rs351988    A    G    622.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006273.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000300947    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:656,54,0
19    815107    rs113614617    C    G    221.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=4.593;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.12;QD=14.79;ReadPosRankSum=2.298;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006273.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519502    GT:AD:DP:GQ:PL    0/1:6,9:15:99:252,0,143
19    815894    rs113121396    C    T    162.38    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=16;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.002;QD=10.15;ReadPosRankSum=0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349038    GT:AD:DP:GQ:PL    0/1:10,6:16:99:192,0,287
19    829408    rs687077    A    G    620.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233997    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:654,51,0
19    829568    rs12460890    C    T    883.10    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.767;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=0.949;QD=9.5;ReadPosRankSum=0.088;SNPEFF_AMINO_ACID_CHANGE=P74;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_829562_829706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZU1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233997    GT:AD:DP:GQ:PL    0/1:57,36:93:99:913,0,1647
19    829723    rs678976    A    G    938.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233997    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:971,75,0
19    829824    rs6510980    C    T    117.43    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.57;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233997    GT:AD:DP:GQ:PL    0/1:2,4:6:32.33:147,0,32
19    830621    rs653847    A    C    121.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.18;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233997    GT:AD:DP:GQ:PL    0/1:1,4:8:23.53:151,0,24
19    830820    rs28626600    G    A    379.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.507;DB;DP=35;Dels=0.0;FS=1.317;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.787;QD=10.84;ReadPosRankSum=1.837;SNPEFF_AMINO_ACID_CHANGE=R158H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_830708_830941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZU1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233997    GT:AD:DP:GQ:PL    0/1:20,15:35:99:409,0,550
19    830854    rs595844    T    C    735.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_AMINO_ACID_CHANGE=F169;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_830708_830941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AZU1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233997    GT:AD:DP:GQ:PL    1/1:0,26:27:63.18:768,63,0
19    844020    rs351111    G    A    200.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.22;SNPEFF_AMINO_ACID_CHANGE=V119I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_843893_844034;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234347    GT:AD:DP:GQ:PL    1/1:0,9:9:18.04:233,18,0
19    844077    rs351112    A    C    141.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234347    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
19    847674    rs71335273    G    A    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRTN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234347    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
19    853538    rs144635045    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.14;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELANE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263621    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    855587    rs17223045    C    T    239.14    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=19;Dels=0.0;FS=1.952;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=12.59;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=N130;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_855564_855794;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELANE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263621    GT:AD:DP:GQ:PL    0/1:11,8:19:99:269,0,318
19    871447    rs1683570    A    G    174.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.709;QD=8.31;ReadPosRankSum=0.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424039    GT:AD:DP:GQ:PL    0/1:14,7:21:99:204,0,445
19    876911    rs10414386    G    A    58.71    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=56.38;MQ0=0;MQRankSum=0.322;QD=5.87;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269814    GT:AD:DP:GQ:PL    0/1:7,3:10:88.71:89,0,135
19    876928    .    CA    C    55.57    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DP=12;FS=3.424;HRun=1;HaplotypeScore=89.4354;IndelType=D;MQ=57.0;MQ0=0;MQRankSum=-0.825;QD=4.63;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269814    GT:AD:DP:GQ:PL    0/1:7,5:12:94.60:95,0,248
19    879791    rs62132309    G    A    56.71    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.76;MQ0=2;MQRankSum=-0.72;QD=7.09;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269814    GT:AD:DP:GQ:PL    0/1:2,6:8:51.83:87,0,52
19    880066    rs34799086    G    A    293.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.546;QD=18.33;ReadPosRankSum=-0.061;SNPEFF_AMINO_ACID_CHANGE=S167;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_879937_880148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538572    GT:AD:DP:GQ:PL    0/1:4,12:16:99:323,0,122
19    885118    rs73492577    T    C    32.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.42;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269814    GT:AD:DP:GQ:PL    0/1:3,2:5:62.10:62,0,111
19    885706    rs7253460    G    C    46.45    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=-0.382;QD=4.22;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269814    GT:AD:DP:GQ:PL    0/1:8,3:11:76.45:76,0,270
19    885818    rs1060442    A    G    297.56    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.576;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.247;QD=9.3;ReadPosRankSum=-1.349;SNPEFF_AMINO_ACID_CHANGE=F277;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_885770_886201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269814    GT:AD:DP:GQ:PL    0/1:18,14:32:99:328,0,547
19    886257    rs2930900    A    G    31.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.55;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269814    GT:AD:DP:GQ:PL    0/1:5,2:7:61.81:62,0,174
19    899978    rs2306718    G    A    533.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361574    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:567,42,0
19    960187    rs1637993    G    C    1153.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    1/1:0,36:36:93.29:1186,93,0
19    960266    rs1683584    C    T    164.85    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=13.74;ReadPosRankSum=-1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    0/1:5,7:12:99:195,0,142
19    960277    rs2302111    G    C    87.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=8.79;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    0/1:6,4:10:99:118,0,217
19    960363    rs1637994    C    T    63.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.8;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    0/1:1,3:4:29.21:93,0,29
19    965043    rs12608658    T    C    263.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=29.27;SNPEFF_AMINO_ACID_CHANGE=N387;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_964833_965080;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:296,24,0
19    966693    rs6510986    C    T    837.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=A440;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_966572_966868;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    1/1:0,24:24:63.21:870,63,0
19    966891    rs113560697    C    T    428.62    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=2.17;DB;DP=31;Dels=0.0;FS=3.64;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=1.318;QD=13.83;ReadPosRankSum=-0.629;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    0/1:12,19:31:99:459,0,337
19    966966    rs11446822    A    AG    293.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=27.4154;IndelType=I;MQ=61.34;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    1/1:1,7:8:24.08:336,24,0
19    968318    rs8105235    C    T    160.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.13;MQ0=0;MQRankSum=-0.101;QD=11.5;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    0/1:7,7:14:99:191,0,222
19    968345    rs79270742    C    T    501.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=23.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    1/1:0,21:21:48.12:534,48,0
19    968346    rs7257352    A    G    561.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    1/1:0,21:21:51.15:594,51,0
19    968623    rs78850921    C    G    84.56    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=12.08;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    0/1:3,4:7:88.75:115,0,89
19    971933    rs1051504    A    G    784.45    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=1.006;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.354;QD=17.83;ReadPosRankSum=1.329;SNPEFF_AMINO_ACID_CHANGE=G550;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_971878_972781;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    0/1:17,26:43:99:814,0,484
19    971949    rs1051505    G    A    1258.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=G556S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_971878_972781;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARID3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263620    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1292,96,0
19    984218    rs8112598    C    T    80.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
19    984537    rs61732720    A    G    111.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.58;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=I62V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_984328_984563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:2,4:6:44.61:141,0,45
19    984554    rs4806884    C    G    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=L67;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_984328_984563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:74,0,26
19    985815    rs2074573    T    G    247.09    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5518;MQ=60.0;MQ0=0;MQRankSum=-0.812;QD=8.82;ReadPosRankSum=1.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:16,12:28:99:277,0,517
19    985997    rs2074574    C    G    718.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    1/1:0,24:24:57.18:752,57,0
19    989730    rs2240147    C    A    721.88    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.368;DB;DP=53;Dels=0.0;FS=4.124;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=13.62;ReadPosRankSum=0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:26,27:53:99:752,0,886
19    990185    rs10409367    G    C    169.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:202,15,0
19    990281    rs2158367    G    A    257.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_AMINO_ACID_CHANGE=A172T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_990223_990364;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:290,24,0
19    990394    rs2240148    T    C    51.67    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=6.46;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:5,3:8:81.67:82,0,143
19    990736    rs2365709    C    T    34.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=-0.736;QD=11.55;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:65,0,30
19    990819    rs2240149    G    A    185.49    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=12;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=15.46;ReadPosRankSum=-0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:5,7:12:99:215,0,105
19    991063    rs2240150    A    C    114.29    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=17;Dels=0.0;FS=2.663;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.906;QD=6.72;ReadPosRankSum=-1.586;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:12,5:17:99:144,0,347
19    991129    rs11538683    G    A    120.13    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.03;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=V264I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_991081_991145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251289    GT:AD:DP:GQ:PL    0/1:1,4:5:8.65:150,0,9
19    1004710    rs4807399    C    T    181.06    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.471;QD=12.07;ReadPosRankSum=-0.865;SNPEFF_AMINO_ACID_CHANGE=R404W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1004520_1005552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    0/1:7,8:15:99:211,0,136
19    1004724    rs11880849    A    G    207.03    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.555;DB;DP=19;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;MQRankSum=0.933;QD=10.9;ReadPosRankSum=-0.222;SNPEFF_AMINO_ACID_CHANGE=P408;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1004520_1005552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    0/1:9,10:19:99:237,0,198
19    1004740    rs2240157    T    C    272.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.266;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.78;MQ0=0;MQRankSum=-0.449;QD=12.38;ReadPosRankSum=1.184;SNPEFF_AMINO_ACID_CHANGE=W414R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1004520_1005552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    0/1:11,11:22:99:302,0,242
19    1004823    rs4806908    G    A    404.15    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=3.13;DB;DP=40;Dels=0.0;FS=7.118;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=10.1;ReadPosRankSum=-0.92;SNPEFF_AMINO_ACID_CHANGE=A441;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1004520_1005552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    0/1:23,17:40:99:434,0,524
19    1004844    rs4806909    T    C    316.04    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=41;Dels=0.0;FS=4.908;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.894;QD=7.71;ReadPosRankSum=-0.643;SNPEFF_AMINO_ACID_CHANGE=P448;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1004520_1005552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    0/1:26,15:41:99:346,0,647
19    1005230    rs2240158    C    T    284.63    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=21;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.458;QD=13.55;ReadPosRankSum=-0.739;SNPEFF_AMINO_ACID_CHANGE=T577M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1004520_1005552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    0/1:11,10:21:99:315,0,354
19    1005531    rs12973948    G    C    174.25    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.225;QD=11.62;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=L677;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1004520_1005552;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    0/1:6,9:15:99:204,0,206
19    1009485    rs10401245    C    G    36.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.05;ReadPosRankSum=1.026;SNPEFF_AMINO_ACID_CHANGE=Q1006E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1009172_1009731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    0/1:3,3:6:66.32:66,0,69
19    1010406    rs62131162    G    A    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.06;SNPEFF_AMINO_ACID_CHANGE=G602;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1009650_1010894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356663    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
19    1010691    rs2240159    A    G    32.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.74;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=P507;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1009650_1010894;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356663    GT:AD:DP:GQ:PL    0/1:1,2:3:33.21:62,0,33
19    1011338    rs34750262    C    T    121    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=30.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000234389    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
19    1012120    rs7145    G    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=7.42;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=Y262;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1012065_1012187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333175    GT:AD:DP:GQ:PL    0/1:2,4:6:72.42:74,0,72
19    1014377    rs1058506    A    G    247.07    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.951;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.655;QD=11.77;ReadPosRankSum=-1.936;SNPEFF_AMINO_ACID_CHANGE=R107;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1014191_1014472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333175    GT:AD:DP:GQ:PL    0/1:10,11:21:99:277,0,316
19    1014398    rs7146    A    G    174.89    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=17;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=10.29;ReadPosRankSum=-0.635;SNPEFF_AMINO_ACID_CHANGE=H100;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1014191_1014472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333175    GT:AD:DP:GQ:PL    0/1:9,8:17:99:205,0,251
19    1030956    rs7256075    G    C    610.53    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=3.52;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6809;MQ=59.39;MQ0=0;MQRankSum=2.27;QD=16.07;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263097    GT:AD:DP:GQ:PL    0/1:17,21:38:99:641,0,414
19    1031212    rs7247087    A    G    339.87    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=0.687;DB;DP=43;Dels=0.0;FS=14.343;HRun=2;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.428;QD=7.9;ReadPosRankSum=0.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263097    GT:AD:DP:GQ:PL    0/1:29,14:43:99:370,0,963
19    1031340    rs12978059    C    G    73.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263097    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:105,9,0
19    1032369    rs10401325    C    T    1606.46    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=3.153;DB;DP=116;Dels=0.0;FS=0.713;HRun=0;HaplotypeScore=3.3815;MQ=56.78;MQ0=0;MQRankSum=0.093;QD=13.85;ReadPosRankSum=-0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263097    GT:AD:DP:GQ:PL    0/1:55,60:116:99:1636,0,1436
19    1032702    rs4315451    C    T    172.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=19.21;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263097    GT:AD:DP:GQ:PL    0/1:3,6:9:94.16:203,0,94
19    1032756    rs55784632    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263097    GT:AD:DP:GQ:PL    0/1:2,2:4:69.18:72,0,69
19    1036552    rs2304262    T    C    455.22    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.771;DB;DP=48;Dels=0.0;FS=4.395;HRun=0;HaplotypeScore=1.8675;MQ=59.52;MQ0=0;MQRankSum=-0.221;QD=9.48;ReadPosRankSum=0.463;SNPEFF_AMINO_ACID_CHANGE=C176;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1036415_1036561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348419    GT:AD:DP:GQ:PL    0/1:25,23:48:99:485,0,737
19    1037932    rs3848639    G    C    84.11    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.113;QD=4.95;ReadPosRankSum=-2.039;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:12,5:17:99:114,0,279
19    1042809    rs3764645    A    G    485.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=35;Dels=0.0;FS=3.581;HRun=2;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-1.207;QD=13.87;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=E188G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1042745_1042825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:17,17:35:99:515,0,458
19    1043864    rs4622634    G    C    519.18    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.891;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5969;MQ=57.17;MQ0=0;MQRankSum=-0.077;QD=10.38;ReadPosRankSum=1.682;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524850    GT:AD:DP:GQ:PL    0/1:28,22:50:99:549,0,571
19    1047002    rs3752234    A    G    33.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.09;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=A608;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1046801_1047023;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:63,0,24
19    1047161    rs3752237    A    G    105.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=15.14;ReadPosRankSum=-1.754;SNPEFF_AMINO_ACID_CHANGE=G617;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1047156_1047377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:3,4:7:99:136,0,102
19    1049012    rs4147912    A    C    37.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.6;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533574    GT:AD:DP:GQ:PL    0/1:2,3:5:63.55:68,0,64
19    1049165    rs4147913    C    T    185.66    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=8.44;ReadPosRankSum=0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533574    GT:AD:DP:GQ:PL    0/1:15,7:22:99:216,0,477
19    1050874    rs12151021    A    G    861.60    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.376;DB;DP=70;Dels=0.0;FS=1.536;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.452;QD=12.31;ReadPosRankSum=1.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533574    GT:AD:DP:GQ:PL    0/1:36,34:70:99:892,0,1175
19    1052005    rs3764652    C    T    347.25    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.793;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.39;MQ0=0;MQRankSum=0.952;QD=11.97;ReadPosRankSum=2.015;SNPEFF_AMINO_ACID_CHANGE=A1009;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1051941_1052125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:17,12:29:99:377,0,516
19    1053677    rs3752242    G    A    272.49    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.39;ReadPosRankSum=0.601;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:13,9:22:99:302,0,427
19    1054060    rs3752243    A    G    578.46    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.698;DB;DP=66;Dels=0.0;FS=2.367;HRun=0;HaplotypeScore=0.0;MQ=58.23;MQ0=0;MQRankSum=0.29;QD=8.76;ReadPosRankSum=-0.647;SNPEFF_AMINO_ACID_CHANGE=L1176;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1054005_1054109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:40,25:66:99:608,0,1139
19    1055191    rs3745842    G    A    173.38    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-1.271;QD=15.76;ReadPosRankSum=-1.271;SNPEFF_AMINO_ACID_CHANGE=R1349Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1055096_1055350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:2,9:11:59.92:203,0,60
19    1056018    rs67875503    GC    G    371.59    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=3.716;DB;DP=29;FS=0.0;HRun=7;HaplotypeScore=124.4725;IndelType=D;MQ=60.11;MQ0=0;MQRankSum=-0.079;QD=12.81;ReadPosRankSum=-0.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:13,16:29:99:411,0,275
19    1056065    rs881768    A    G    446.19    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.786;DB;DP=24;Dels=0.0;FS=1.77;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.732;QD=18.59;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=R1413;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1056065_1056242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:10,14:24:99:476,0,305
19    1056492    rs3752246    G    C    214.80    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=21.48;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=G1527A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1056329_1056498;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263094    GT:AD:DP:GQ:PL    0/1:3,7:10:87.13:245,0,87
19    1058274    .    A    G    357.94    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.586;DP=17;Dels=0.0;FS=6.69;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.566;QD=21.06;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529442    GT:AD:DP:GQ:PL    0/1:5,11:17:99:388,0,156
19    1059004    rs2279796    A    G    193.35    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=2.641;QD=9.21;ReadPosRankSum=-0.106;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529442    GT:AD:DP:GQ:PL    0/1:11,10:21:99:223,0,346
19    1063443    rs4147929    A    G    108.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=13.54;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000532194    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,122
19    1065197    rs4147936    G    C    213.47    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=17;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=1.395;QD=12.56;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525939    GT:AD:DP:GQ:PL    0/1:9,8:17:99:243,0,312
19    1065563    rs2242437    G    C    80.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435683    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
19    1068734    rs3764653    T    C    260.30    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.434;DB;DP=34;Dels=0.0;FS=3.796;HRun=0;HaplotypeScore=3.1526;MQ=60.0;MQ0=0;MQRankSum=0.434;QD=7.66;ReadPosRankSum=0.268;SNPEFF_AMINO_ACID_CHANGE=L132;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1068413_1068743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412039    GT:AD:DP:GQ:PL    0/1:22,12:34:99:290,0,654
19    1068738    rs1801284    G    A    267.95    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.787;DB;DP=31;Dels=0.0;FS=4.192;HRun=0;HaplotypeScore=3.1526;MQ=60.0;MQ0=0;MQRankSum=0.112;QD=8.64;ReadPosRankSum=-0.292;SNPEFF_AMINO_ACID_CHANGE=R133H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1068413_1068743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412039    GT:AD:DP:GQ:PL    0/1:19,12:31:99:298,0,535
19    1073073    rs2072102    A    G    248.77    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.805;QD=8.02;ReadPosRankSum=-0.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313093    GT:AD:DP:GQ:PL    0/1:20,11:31:99:279,0,647
19    1073409    rs2074441    C    G    218.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=18.2;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313093    GT:AD:DP:GQ:PL    0/1:4,8:12:99:248,0,104
19    1074000    rs2074442    A    T    31.35    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=4.48;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=E142D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1073947_1074013;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543365    GT:AD:DP:GQ:PL    0/1:5,2:7:61.34:61,0,183
19    1074064    rs12610818    C    G    554.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313093    GT:AD:DP:GQ:PL    1/1:0,20:20:48.13:588,48,0
19    1074252    rs11084881    T    G    393.53    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.394;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=12.69;ReadPosRankSum=0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313093    GT:AD:DP:GQ:PL    0/1:17,14:31:99:424,0,571
19    1074315    rs12974537    C    T    219.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.825;QD=18.27;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313093    GT:AD:DP:GQ:PL    0/1:4,8:12:75.14:249,0,75
19    1079959    rs36084354    G    A    852.24    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.462;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.931;QD=13.75;ReadPosRankSum=-2.087;SNPEFF_AMINO_ACID_CHANGE=M355I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1079927_1080117;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536472    GT:AD:DP:GQ:PL    0/1:29,33:62:99:882,0,842
19    1080189    rs2074453    G    C    1074.42    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DB;DP=83;Dels=0.0;FS=1.892;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.165;QD=12.94;ReadPosRankSum=-0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313093    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1104,0,1260
19    1080311    rs2074454    G    C    764.71    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=64;Dels=0.0;FS=7.146;HRun=2;HaplotypeScore=3.0564;MQ=59.64;MQ0=0;MQRankSum=0.868;QD=11.95;ReadPosRankSum=-0.08;SNPEFF_AMINO_ACID_CHANGE=P427;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1080254_1080546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536472    GT:AD:DP:GQ:PL    0/1:29,35:64:99:795,0,766
19    1081617    rs10404947    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.78;SNPEFF_AMINO_ACID_CHANGE=Q621;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1081549_1081737;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536472    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
19    1090020    rs112167759    TG    T    473.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=8;HaplotypeScore=110.8352;IndelType=D;MQ=54.07;MQ0=0;QD=21.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313093    GT:AD:DP:GQ:PL    1/1:2,20:22:54.07:516,54,0
19    1093737    rs2074443    A    G    85.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215587    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
19    1094004    rs12459404    G    A    667.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_AMINO_ACID_CHANGE=S44F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1093903_1094077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215587    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:700,54,0
19    1219274    rs34928889    G    A    85.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326873    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    1222012    rs2075607    G    C    264.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=22.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326873    GT:AD:DP:GQ:PL    1/1:0,12:12:24.07:298,24,0
19    1231142    rs8110590    T    C    637.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=27.74;SNPEFF_AMINO_ACID_CHANGE=H365R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1229947_1231274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215376    GT:AD:DP:GQ:PL    1/1:0,23:23:60.12:671,60,0
19    1231430    rs35636773    T    C    31.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326873    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
19    1233597    rs3746102    G    A    135.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=19.39;SNPEFF_AMINO_ACID_CHANGE=P263;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1233425_1233635;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf26;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215376    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:168,12,0
19    1242048    rs2074513    C    T    423.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=24.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215375    GT:AD:DP:GQ:PL    1/1:1,16:17:39.06:456,39,0
19    1278665    rs757294    A    G    265.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIRBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444172    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:299,24,0
19    1357082    rs713042    T    C    1971.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_AMINO_ACID_CHANGE=S45;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1357008_1357093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344663    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2004,150,0
19    1360082    rs8109377    G    A    188.41    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=17.13;ReadPosRankSum=2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311401    GT:AD:DP:GQ:PL    0/1:5,6:11:99:218,0,139
19    1360575    rs3826942    G    A    1180.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_AMINO_ACID_CHANGE=G149R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1360194_1360628;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542512    GT:AD:DP:GQ:PL    1/1:0,37:37:90.30:1214,90,0
19    1364139    rs10570720    ACACT    A    1975.15    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=7.632;DB;DP=94;FS=8.73;HRun=0;HaplotypeScore=433.6405;IndelType=D;MQ=58.22;MQ0=0;MQRankSum=-0.749;QD=21.01;ReadPosRankSum=-1.525;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542512    GT:AD:DP:GQ:PL    0/1:54,40:94:99:2014,0,4113
19    1364306    rs17673260    A    G    278.56    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=28;Dels=0.0;FS=4.314;HRun=0;HaplotypeScore=1.7834;MQ=55.74;MQ0=0;MQRankSum=2.757;QD=9.95;ReadPosRankSum=0.839;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542512    GT:AD:DP:GQ:PL    0/1:18,10:28:99:309,0,573
19    1366422    rs2668418    C    G    784.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=30.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356765    GT:AD:DP:GQ:PL    1/1:0,26:26:69.18:817,69,0
19    1366994    rs2668419    A    G    71.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356765    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:104,9,0
19    1367014    rs2668420    T    C    110.44    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356765    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,100
19    1367226    rs11668809    G    A    352.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.366;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9874;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=13.06;ReadPosRankSum=-0.903;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356765    GT:AD:DP:GQ:PL    0/1:15,12:27:99:383,0,470
19    1376723    rs266805    G    A    72.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=14.49;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311401    GT:AD:DP:GQ:PL    1/1:0,4:5:9.03:104,9,0
19    1388538    rs1142530    C    T    326.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_AMINO_ACID_CHANGE=P23L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1388524_1388592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000233627    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:360,27,0
19    1389517    rs11666067    C    A    1999.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_AMINO_ACID_CHANGE=P270T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1388832_1391049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435801    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2033,156,0
19    1390757    rs2074895    C    A    152.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539882    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
19    1399056    rs55776826    C    T    421.12    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.073;QD=14.52;ReadPosRankSum=-1.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233627    GT:AD:DP:GQ:PL    0/1:13,16:29:99:451,0,336
19    1399476    rs73515058    T    C    166.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.7;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233627    GT:AD:DP:GQ:PL    0/1:4,6:10:99:197,0,100
19    1421046    rs72458772    ACT    A    504.01    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.874;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=98.4084;IndelType=D;MQ=58.31;MQ0=0;MQRankSum=-0.52;QD=20.16;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233078    GT:AD:DP:GQ:PL    0/1:11,14:25:99:543,0,543
19    1422299    rs2271055    T    C    1794.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233078    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1827,138,0
19    1432303    rs74348591    C    T    167.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233078    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
19    1432577    .    A    C    41.57    FSFilter60;QDFilter2    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.767;DP=80;Dels=0.0;FS=79.407;HRun=2;HaplotypeScore=6.1431;MQ=51.97;MQ0=0;MQRankSum=-1.732;QD=0.52;ReadPosRankSum=-1.128;SNPEFF_AMINO_ACID_CHANGE=P312;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1432513_1432689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233078    GT:AD:DP:GQ:PL    0/1:43,35:80:71.56:72,0,1288
19    1434842    rs61735591    C    T    196.37    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.183;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7824;MQ=57.05;MQ0=0;MQRankSum=-2.025;QD=12.27;ReadPosRankSum=-1.447;SNPEFF_AMINO_ACID_CHANGE=P385;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1434736_1435683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAZAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000233078    GT:AD:DP:GQ:PL    0/1:9,7:16:99:226,0,201
19    1475391    rs166451    A    C    35.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.92;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233607    GT:AD:DP:GQ:PL    0/1:3,3:6:65.50:65,0,104
19    1495634    rs2277748    G    A    458.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233596    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:491,36,0
19    1496153    rs2656886    C    T    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233596    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    1496263    rs2244686    A    G    501.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233596    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:534,42,0
19    1497060    rs2244794    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233596    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
19    1497121    rs2244801    G    T    287.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233596    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:320,27,0
19    1497144    rs2292456    C    T    139.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.589;QD=15.53;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000233596    GT:AD:DP:GQ:PL    0/1:3,6:9:50.16:170,0,50
19    1497543    rs1050017    A    G    98.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.78;SNPEFF_AMINO_ACID_CHANGE=S364G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1497173_1497926;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395484    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:131,12,0
19    1497762    rs112208222    G    A    489.27    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.724;DB;DP=43;Dels=0.0;FS=2.747;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.127;QD=11.38;ReadPosRankSum=0.637;SNPEFF_AMINO_ACID_CHANGE=E437K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1497173_1497926;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REEP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395484    GT:AD:DP:GQ:PL    0/1:25,18:43:99:519,0,575
19    1507483    rs791460    T    C    341.28    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=32;Dels=0.0;FS=1.397;HRun=4;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.422;QD=10.66;ReadPosRankSum=1.842;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330475    GT:AD:DP:GQ:PL    0/1:19,13:32:99:371,0,555
19    1507535    rs791461    T    C    1144.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.38;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330475    GT:AD:DP:GQ:PL    1/1:0,37:37:90.24:1177,90,0
19    1507710    rs791462    T    A    364.70    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=1.212;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=21.45;ReadPosRankSum=1.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTSL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330475    GT:AD:DP:GQ:PL    0/1:5,12:17:99:395,0,149
19    1529527    rs2668409    G    C    123.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:156,12,0
19    1529550    rs2656863    A    G    77.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
19    1531869    rs118008362    C    T    43.65    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.085;DB;DP=13;Dels=0.0;FS=2.817;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.761;QD=3.36;ReadPosRankSum=-0.592;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    0/1:10,3:13:73.64:74,0,264
19    1532121    rs8110745    T    C    58.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.56;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:89,6,0
19    1534999    rs72987566    C    T    78.16    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.731;QD=13.03;ReadPosRankSum=0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    0/1:1,4:6:21.40:108,0,21
19    1535084    rs12984316    G    A    185.72    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.868;DB;DP=15;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.099;QD=12.38;ReadPosRankSum=-0.289;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    0/1:8,7:15:99:216,0,219
19    1535179    rs55953917    G    A    139.67    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.395;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.32;MQ0=0;MQRankSum=1.973;QD=8.22;ReadPosRankSum=-0.337;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    0/1:9,8:17:99:170,0,250
19    1535193    rs67816271    GCCC    G    391.79    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.443;DB;DP=18;FS=0.0;HRun=5;HaplotypeScore=136.1933;IndelType=D;MQ=55.31;MQ0=0;MQRankSum=-0.755;QD=21.77;ReadPosRankSum=0.666;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    0/1:8,10:18:99:431,0,499
19    1535205    rs265282    G    C    188.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.31;MQ0=0;MQRankSum=-0.311;QD=10.47;ReadPosRankSum=0.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334770    GT:AD:DP:GQ:PL    0/1:8,10:18:99:218,0,196
19    1535291    rs12462146    G    A    175.10    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.98;MQ0=0;MQRankSum=1.246;QD=15.92;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454744    GT:AD:DP:GQ:PL    0/1:4,7:11:99:205,0,133
19    1535349    rs265281    G    A    83.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=PLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454744    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
19    1611856    rs62130064    G    A    185.93    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.603;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.86;MQ0=0;MQRankSum=0.868;QD=8.08;ReadPosRankSum=-1.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262965    GT:AD:DP:GQ:PL    0/1:14,9:23:99:216,0,456
19    1615852    rs41275838    C    T    390.10    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.749;DB;DP=50;Dels=0.0;FS=2.706;HRun=1;HaplotypeScore=0.6651;MQ=55.31;MQ0=0;MQRankSum=-1.439;QD=7.8;ReadPosRankSum=-1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262965    GT:AD:DP:GQ:PL    0/1:32,18:50:99:420,0,913
19    1619333    rs1140828    G    A    208.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.75;SNPEFF_AMINO_ACID_CHANGE=G385;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1619315_1619473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395423    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
19    1619339    rs8140    T    C    205.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.35;SNPEFF_AMINO_ACID_CHANGE=S383;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1619315_1619473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395423    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
19    1624007    rs55677929    A    G    146.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=14.63;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262965    GT:AD:DP:GQ:PL    0/1:4,6:10:99:176,0,125
19    1789556    rs12978609    C    T    202.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=14;Dels=0.0;FS=2.817;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.312;QD=14.47;ReadPosRankSum=-0.377;SNPEFF_AMINO_ACID_CHANGE=Q846;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1789360_1789726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525591    GT:AD:DP:GQ:PL    0/1:7,7:14:99:233,0,129
19    1796166    rs8100856    C    T    515.35    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=2.583;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.48;MQ0=0;MQRankSum=-0.64;QD=11.71;ReadPosRankSum=-0.095;SNPEFF_AMINO_ACID_CHANGE=V571I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1796076_1796264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525591    GT:AD:DP:GQ:PL    0/1:25,19:44:99:545,0,713
19    1797259    rs6510627    C    G    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382339    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:69,0,28
19    1802433    rs10418344    T    C    511.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.342;DB;DP=34;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.234;QD=15.04;ReadPosRankSum=-0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310127    GT:AD:DP:GQ:PL    0/1:17,17:34:99:541,0,529
19    1806210    rs7252063    A    C    846.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310127    GT:AD:DP:GQ:PL    1/1:0,27:27:72.19:880,72,0
19    1808450    rs10596010    GACAC    G    238.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=32.584;IndelType=D;MQ=41.96;MQ0=0;QD=39.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310127    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:280,15,0
19    1809598    rs9941464    C    T    36.03    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=5.15;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310127    GT:AD:DP:GQ:PL    0/1:4,3:7:66.03:66,0,145
19    1809836    rs8107742    T    C    75.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310127    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
19    1810605    rs716993    T    C    562.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170168    GT:AD:DP:GQ:PL    1/1:0,19:19:45.15:596,45,0
19    1811462    rs45535339    C    T    216.62    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.57;DB;DP=21;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.739;QD=10.32;ReadPosRankSum=0.176;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170168    GT:AD:DP:GQ:PL    0/1:11,10:21:99:247,0,316
19    1811547    rs12609187    A    G    853.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.48;SNPEFF_AMINO_ACID_CHANGE=P10;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1811488_1811665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382339    GT:AD:DP:GQ:PL    1/1:0,28:28:72.19:886,72,0
19    1811603    rs7250872    C    T    357.61    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=41;Dels=0.0;FS=2.984;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;MQRankSum=0.29;QD=8.72;ReadPosRankSum=0.235;SNPEFF_AMINO_ACID_CHANGE=G45R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1811488_1811883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ATP8B3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310127    GT:AD:DP:GQ:PL    0/1:25,16:41:99:388,0,679
19    1817134    .    C    CCCAGATGGGG    1626.41    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=0;HaplotypeScore=88.6231;IndelType=I;MQ=29.0;MQ0=0;QD=116.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170168    GT:AD:DP:GQ:PL    1/1:3,11:14:33.11:1668,33,0
19    1818459    rs1610106    A    G    79.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170168    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
19    1818952    rs893538    C    G    403.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=25.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170168    GT:AD:DP:GQ:PL    1/1:0,16:16:36.07:437,36,0
19    1821637    rs4807145    A    G    498.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=S31P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1821518_1821745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REXO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543452    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:532,42,0
19    1877727    rs2289287    G    T    64    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=25.78;MQ0=0;MQRankSum=1.92;QD=8.0;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM108A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250974    GT:AD:DP:GQ:PL    0/1:3,5:8:9.68:94,0,10
19    1880950    rs4807160    T    C    128.18    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.535;DB;DP=19;Dels=0.0;FS=4.775;HRun=0;HaplotypeScore=1.367;MQ=58.78;MQ0=0;MQRankSum=0.658;QD=6.75;ReadPosRankSum=-0.307;SNPEFF_AMINO_ACID_CHANGE=K144E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_1880895_1881047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM108A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250974    GT:AD:DP:GQ:PL    0/1:13,6:19:99:158,0,436
19    1908694    rs4806818    C    T    174.81    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.791;DB;DP=13;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=13.45;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329478    GT:AD:DP:GQ:PL    0/1:6,7:13:99:205,0,195
19    1914940    rs11084918    A    G    786.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329478    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:819,66,0
19    1915118    rs10853957    A    C    306.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329478    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:339,27,0
19    1917925    rs10410479    T    C    407.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329478    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:440,36,0
19    1918023    rs10415845    T    C    520.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329478    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:554,42,0
19    1918760    .    CA    C    118.23    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.184;DP=23;FS=0.0;HRun=15;HaplotypeScore=168.4503;IndelType=D;MQ=55.86;MQ0=0;MQRankSum=1.447;QD=5.14;ReadPosRankSum=1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316097    GT:AD:DP:GQ:PL    0/1:12,9:23:97.72:157,0,98
19    1922939    rs7259322    C    G    161.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=32.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411971    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
19    1923385    rs4806820    T    C    89.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=17.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411971    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:122,12,0
19    1923846    rs7248688    A    G    147.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=21.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411971    GT:AD:DP:GQ:PL    1/1:0,7:7:18.01:181,18,0
19    1923915    rs144892529    T    C    46.55    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.03;MQ0=0;MQRankSum=0.727;QD=9.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411971    GT:AD:DP:GQ:PL    0/1:2,3:5:21.43:77,0,21
19    1924050    rs4807170    T    C    236.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.088;DB;DP=18;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.8941;MQ=52.05;MQ0=0;MQRankSum=-0.4;QD=13.16;ReadPosRankSum=0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452128    GT:AD:DP:GQ:PL    0/1:8,10:18:99:267,0,223
19    1925942    rs8730    C    T    433.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SCAMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452128    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:467,36,0
19    1952586    rs11669357    G    T    175.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255641    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
19    1952841    rs2396366    T    C    688.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.49;MQ0=0;QD=27.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255641    GT:AD:DP:GQ:PL    1/1:0,25:25:57.18:721,57,0
19    1953637    rs35628322    C    T    487.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314315    GT:AD:DP:GQ:PL    1/1:0,13:14:39.12:521,39,0
19    1954126    rs34622118    C    CA    3449.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.0;HRun=0;HaplotypeScore=467.7996;IndelType=I;MQ=59.49;MQ0=0;QD=45.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255641    GT:AD:DP:GQ:PL    1/1:1,74:75:99:3449,216,0
19    1954128    rs62129474    T    C    2286.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=30.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255641    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2320,187,0
19    2037846    rs1064543    A    C    133.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.097;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=50.91;MQ0=0;MQRankSum=2.259;QD=8.91;ReadPosRankSum=0.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541165    GT:AD:DP:GQ:PL    0/1:9,6:15:62.46:164,0,62
19    2041032    rs2287003    T    C    227.03    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=33;Dels=0.0;FS=1.904;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=1.12;QD=6.88;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250896    GT:AD:DP:GQ:PL    0/1:21,11:33:99:257,0,577
19    2043271    rs2302585    G    A    207.93    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DB;DP=23;Dels=0.0;FS=4.393;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=9.04;ReadPosRankSum=0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKNK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250896    GT:AD:DP:GQ:PL    0/1:14,8:23:99:238,0,502
19    2073466    rs758145    T    C    1858.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357066    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1891,141,0
19    2078221    rs11541046    G    C    218.04    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=17;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.914;QD=12.83;ReadPosRankSum=-1.107;SNPEFF_AMINO_ACID_CHANGE=L113;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2078139_2078678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357066    GT:AD:DP:GQ:PL    0/1:9,8:17:99:248,0,299
19    2078409    rs2074893    A    G    709.15    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.236;DB;DP=39;Dels=0.0;FS=1.307;HRun=0;HaplotypeScore=0.9665;MQ=59.41;MQ0=0;MQRankSum=-0.372;QD=18.18;ReadPosRankSum=1.326;SNPEFF_AMINO_ACID_CHANGE=L51;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2078139_2078678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357066    GT:AD:DP:GQ:PL    0/1:13,26:39:99:739,0,414
19    2078488    rs2074894    T    C    411.48    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.172;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=-0.448;QD=11.76;ReadPosRankSum=-0.31;SNPEFF_AMINO_ACID_CHANGE=P24;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2078139_2078678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOBKL2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357066    GT:AD:DP:GQ:PL    0/1:18,17:35:99:441,0,499
19    2097832    rs12104154    C    T    167.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.247;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.05;MQ0=0;MQRankSum=0.813;QD=10.45;ReadPosRankSum=-1.464;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:10,6:16:99:197,0,291
19    2097986    rs7250336    T    C    988.12    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=68;Dels=0.0;FS=2.752;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.539;QD=14.53;ReadPosRankSum=-1.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:31,37:68:99:1018,0,984
19    2098015    rs7253456    T    C    1208.31    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.023;DB;DP=97;Dels=0.0;FS=4.465;HRun=1;HaplotypeScore=3.7249;MQ=59.76;MQ0=0;MQRankSum=0.784;QD=12.46;ReadPosRankSum=-0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:50,47:97:99:1238,0,1662
19    2098864    rs142295306    AG    A    558.34    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=2.662;DB;DP=40;FS=0.0;HRun=5;HaplotypeScore=112.3662;IndelType=D;MQ=59.7;MQ0=0;MQRankSum=1.254;QD=13.96;ReadPosRankSum=1.451;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:18,22:40:99:597,0,621
19    2099109    rs2240649    G    T    331.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.55;MQ0=0;MQRankSum=0.613;QD=10.37;ReadPosRankSum=0.692;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:16,16:32:99:362,0,555
19    2099111    rs12984606    T    G    309.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.286;DB;DP=32;Dels=0.0;FS=1.84;HRun=1;HaplotypeScore=1.4105;MQ=58.55;MQ0=0;MQRankSum=0.249;QD=9.69;ReadPosRankSum=0.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:16,16:32:99:340,0,528
19    2099376    rs112530329    G    C    165.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.727;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.55;MQ0=0;MQRankSum=-0.652;QD=10.32;ReadPosRankSum=-0.772;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:8,8:16:99:195,0,244
19    2108929    rs56123473    C    A    177.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=19.69;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:3,6:9:93.04:207,0,93
19    2109019    rs2072306    T    C    420.43    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=1.834;DB;DP=29;Dels=0.0;FS=7.346;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=14.5;ReadPosRankSum=-0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:12,17:29:99:450,0,343
19    2109071    rs56150334    C    T    512.41    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.334;DB;DP=43;Dels=0.0;FS=4.417;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.082;QD=11.92;ReadPosRankSum=-0.039;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:22,21:43:99:542,0,697
19    2109157    rs25673    T    C    1016.33    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.133;DB;DP=58;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=2.6303;MQ=60.0;MQ0=0;MQRankSum=-0.274;QD=17.52;ReadPosRankSum=1.259;SNPEFF_AMINO_ACID_CHANGE=I1031V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2109085_2109206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356926    GT:AD:DP:GQ:PL    0/1:26,32:58:99:1046,0,750
19    2109812    rs79162849    G    C    236.66    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.296;QD=21.51;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:2,9:11:52.87:267,0,53
19    2109988    rs77265501    A    T    99.96    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=8.33;ReadPosRankSum=-1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:7,5:12:99:130,0,254
19    2110019    rs2074958    T    C    212.52    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.984;DB;DP=15;Dels=0.0;FS=2.081;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=14.17;ReadPosRankSum=-1.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:8,7:15:99:243,0,253
19    2110108    rs113684349    T    C    382.48    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.327;QD=13.19;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:15,14:29:99:412,0,454
19    2110746    rs20567    G    A    186.76    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.067;DB;DP=15;Dels=0.0;FS=2.817;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.78;QD=12.45;ReadPosRankSum=1.276;SNPEFF_AMINO_ACID_CHANGE=S1045;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2110706_2110895;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355272    GT:AD:DP:GQ:PL    0/1:7,8:15:99:217,0,128
19    2111382    rs17604954    G    A    97.23    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=8.84;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,225
19    2111397    rs75865123    T    C    52.95    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=5.88;ReadPosRankSum=1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:6,3:9:82.94:83,0,214
19    2111649    rs2074959    T    C    60.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=7.068;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=7.52;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:5,3:8:90.12:90,0,142
19    2111661    rs55759847    G    A    67.47    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=7.068;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.031;QD=6.13;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:6,5:11:97.46:97,0,127
19    2114175    rs55698722    T    C    228.64    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=15;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=15.24;ReadPosRankSum=2.04;SNPEFF_AMINO_ACID_CHANGE=K681;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2114124_2114301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350812    GT:AD:DP:GQ:PL    0/1:7,8:15:99:259,0,216
19    2114465    rs11673600    C    A    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:70,0,30
19    2115439    rs2066764    C    G    285.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=27;Dels=0.0;FS=4.678;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=0.027;QD=10.57;ReadPosRankSum=0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:15,12:27:99:315,0,480
19    2115493    rs2066775    A    G    73.36    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.776;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=4.59;ReadPosRankSum=-0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:11,5:16:99:103,0,359
19    2116400    rs9676693    C    T    35.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:66,0,32
19    2116466    rs734727    G    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    2116649    rs2074960    A    G    103.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=14.75;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=R483;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2116604_2116745;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350812    GT:AD:DP:GQ:PL    0/1:3,4:7:92.40:133,0,92
19    2118692    rs34569645    C    T    173.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.12;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9877;MQ=58.45;MQ0=0;MQRankSum=-0.766;QD=11.55;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=G372R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2118600_2118831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350812    GT:AD:DP:GQ:PL    0/1:6,9:15:99:203,0,198
19    2121316    rs11667435    C    T    629.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.208;DB;DP=46;Dels=0.0;FS=1.206;HRun=0;HaplotypeScore=3.9133;MQ=60.0;MQ0=0;MQRankSum=1.208;QD=13.68;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:23,23:46:99:659,0,669
19    2123328    rs76578931    A    G    363.16    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.874;DB;DP=26;Dels=0.0;FS=6.186;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.341;QD=13.97;ReadPosRankSum=0.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:11,15:26:99:393,0,352
19    2123516    rs2072304    A    G    150.31    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=18.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:3,5:8:87.98:180,0,88
19    2123928    rs75483641    C    T    39.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:2,2:4:57.57:70,0,58
19    2127272    rs4807203    A    G    155.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7319;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=11.08;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP3D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343722    GT:AD:DP:GQ:PL    0/1:8,6:14:99:185,0,218
19    2221892    rs79712071    C    A    45.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.44;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOT1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221482    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:76,0,33
19    2226772    rs2302061    G    C    501.18    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=26;Dels=0.0;FS=4.416;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.845;QD=19.28;ReadPosRankSum=-0.087;SNPEFF_AMINO_ACID_CHANGE=V1418L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2226182_2227126;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOT1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221482    GT:AD:DP:GQ:PL    0/1:9,17:26:99:531,0,237
19    2244623    rs45502694    T    G    419.76    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=19;Dels=0.0;FS=5.18;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;MQRankSum=0.046;QD=22.09;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221494    GT:AD:DP:GQ:PL    0/1:5,14:19:99:450,0,133
19    2244675    rs72985496    A    C    169.47    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=55.86;MQ0=0;MQRankSum=-0.244;QD=7.37;ReadPosRankSum=0.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221494    GT:AD:DP:GQ:PL    0/1:11,8:23:99:199,0,232
19    2244849    rs45486197    G    A    116.29    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=57.05;MQ0=0;MQRankSum=0.322;QD=14.54;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221494    GT:AD:DP:GQ:PL    0/1:3,5:8:65.40:146,0,65
19    2244903    rs6510652    T    G    125.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221494    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
19    2246652    rs2074861    G    A    166.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221494    GT:AD:DP:GQ:PL    1/1:0,5:6:15.05:199,15,0
19    2247127    rs59758246    G    GCCCCCCCCAAGTCGGAGCCAGAAGGATCTGCACAGGCCGGGCAGGATGCCCCTCCCATCAGGCT    490.68    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=460.7546;IndelType=I;MQ=57.3;MQ0=0;MQRankSum=-0.922;QD=40.89;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221494    GT:AD:DP:GQ:PL    0/1:5,1:12:99:530,0,278
19    2248683    rs4807216    C    T    34.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JSRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300961    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
19    2249477    rs10407022    G    T    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.68;SNPEFF_AMINO_ACID_CHANGE=S49I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2249113_2249743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221496    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:166,12,0
19    2251512    rs7252789    T    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_AMINO_ACID_CHANGE=G413;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2251098_2252072;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221496    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    2251817    rs10417628    T    C    239.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_AMINO_ACID_CHANGE=V515A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2251098_2252072;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221496    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:272,21,0
19    2253590    rs3746158    C    T    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221496    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:74,0,27
19    2255336    rs886363    A    G    123.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.378;QD=10.33;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221496    GT:AD:DP:GQ:PL    0/1:6,6:12:99:154,0,165
19    2271181    rs2523174    T    C    41.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342063    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    2271323    rs2523175    A    G    60.57    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=12;Dels=0.0;FS=3.09;HRun=2;HaplotypeScore=0.8667;MQ=58.05;MQ0=0;MQRankSum=-0.382;QD=5.05;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342063    GT:AD:DP:GQ:PL    0/1:9,3:12:90.56:91,0,258
19    2271741    rs2074458    G    A    710.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.447;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.421;QD=13.15;ReadPosRankSum=-0.183;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342063    GT:AD:DP:GQ:PL    0/1:27,27:54:99:740,0,826
19    2289962    rs79931780    G    A    76.96    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.495;QD=10.99;ReadPosRankSum=0.198;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LINGO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404279    GT:AD:DP:GQ:PL    0/1:2,5:7:46.44:107,0,46
19    2328281    rs11666344    G    A    73.85    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.084;DB;DP=18;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.084;QD=4.1;ReadPosRankSum=-1.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252622    GT:AD:DP:GQ:PL    0/1:13,5:18:99:104,0,453
19    2337377    rs3752204    C    G    1099.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    1/1:0,31:31:87.27:1132,87,0
19    2339693    rs10445607    A    G    100.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:133,12,0
19    2339949    rs3746285    T    C    154.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.743;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.065;QD=11.07;ReadPosRankSum=1.485;SNPEFF_AMINO_ACID_CHANGE=Y242;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2339823_2339965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    0/1:8,6:14:99:185,0,294
19    2339958    rs1609752    T    C    395.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=36.0;SNPEFF_AMINO_ACID_CHANGE=D245;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2339823_2339965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:429,33,0
19    2340046    rs3746287    C    T    88.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=12.66;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    0/1:3,4:7:99:119,0,100
19    2340050    rs1609753    C    T    69.08    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.87;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    0/1:4,3:7:74.49:99,0,74
19    2340154    rs5826760    G    GC    416.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=63.3653;IndelType=I;MQ=59.9;MQ0=0;QD=32.06;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_2340075_2340159;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    1/1:3,10:13:33.11:459,33,0
19    2340235    rs12460384    C    T    32.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.17;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    0/1:2,2:4:59.19:63,0,59
19    2340736    rs1609754    T    C    121.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
19    2341059    rs11880345    G    A    290.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=26.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:324,27,0
19    2341060    rs7245824    T    C    252.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=22.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    1/1:0,11:11:24.07:285,24,0
19    2343142    rs3746289    G    A    77.49    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.5;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382189    GT:AD:DP:GQ:PL    0/1:2,3:5:49:107,0,49
19    2353150    rs1128402    C    A    156.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.199;DB;DP=20;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.193;QD=7.85;ReadPosRankSum=-1.35;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004410.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452401    GT:AD:DP:GQ:PL    0/1:12,8:20:99:187,0,282
19    2389872    rs891174    G    C    366.53    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.011;DB;DP=51;Dels=0.0;FS=2.789;HRun=1;HaplotypeScore=0.7887;MQ=59.55;MQ0=0;MQRankSum=-0.8;QD=7.19;ReadPosRankSum=-1.716;SNPEFF_AMINO_ACID_CHANGE=S30T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2389784_2389925;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:35,16:51:99:397,0,1066
19    2389954    rs891175    G    A    478.05    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.842;DB;DP=48;Dels=0.0;FS=9.793;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-1.193;QD=9.96;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:29,19:48:99:508,0,876
19    2389958    rs891176    T    A    488.40    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=2.041;DB;DP=47;Dels=0.0;FS=9.768;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.418;QD=10.39;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:28,19:47:99:518,0,812
19    2396556    rs7252886    C    T    143.70    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.956;QD=17.96;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=G54;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2396537_2396664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:3,5:8:99:174,0,101
19    2398849    rs10407225    A    G    1009    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.648;DB;DP=72;Dels=0.0;FS=1.962;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.8;QD=14.01;ReadPosRankSum=0.056;SNPEFF_AMINO_ACID_CHANGE=V109;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2398793_2398860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395264    GT:AD:DP:GQ:PL    0/1:37,35:72:99:1039,0,1136
19    2399259    rs79824768    C    T    115.06    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=14.38;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:3,5:8:68.94:145,0,69
19    2399325    rs10412742    C    T    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
19    2405206    rs4807259    A    G    107.67    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.53;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:138,0,27
19    2405262    rs12975324    C    G    45.85    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=4.58;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:7,3:10:75.84:76,0,251
19    2405559    rs7254110    A    G    605.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.926;DB;DP=48;Dels=0.0;FS=4.67;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.607;QD=12.61;ReadPosRankSum=-0.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332578    GT:AD:DP:GQ:PL    0/1:24,24:48:99:635,0,795
19    2520716    rs3764584    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_2520606_2520723;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382159    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    2524273    rs4807288    G    C    1674.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382159    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1708,126,0
19    2524477    rs4807289    T    C    109.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382159    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
19    2537968    rs13343670    A    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382159    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
19    2538074    rs71337145    C    CAAACA    1511.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.387;DB;DP=28;FS=8.239;HRun=0;HaplotypeScore=100.9488;IndelType=I;MQ=56.73;MQ0=0;MQRankSum=-0.347;QD=54.0;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382159    GT:AD:DP:GQ:PL    1/1:10,16:28:5.32:1552,5,0
19    2538760    rs7250546    A    T    339.39    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.25;DB;DP=30;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.592;QD=11.31;ReadPosRankSum=1.118;SNPEFF_AMINO_ACID_CHANGE=I113F;SNPEFF_CODON_CHANGE=Att/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2538645_2538786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC104537.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222301    GT:AD:DP:GQ:PL    0/1:16,14:30:99:369,0,505
19    2717256    rs3745812    C    G    673.27    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.763;DB;DP=54;Dels=0.0;FS=2.481;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=12.47;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=G183;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2714566_2717873;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIRAS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323469    GT:AD:DP:GQ:PL    0/1:30,23:54:99:703,0,930
19    2717880    rs7343093    A    G    215.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIRAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323469    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
19    2759107    rs9304899    A    G    131.25    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-2.141;QD=10.94;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221566    GT:AD:DP:GQ:PL    0/1:7,5:12:99:161,0,238
19    2762493    rs189810627    G    A    427.41    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.908;DB;DP=34;Dels=0.0;FS=4.613;HRun=0;HaplotypeScore=0.9999;MQ=59.32;MQ0=0;MQRankSum=0.347;QD=12.57;ReadPosRankSum=1.665;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221566    GT:AD:DP:GQ:PL    0/1:19,15:34:99:457,0,493
19    2762585    rs2302491    A    C    520.16    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.998;DB;DP=54;Dels=0.0;FS=2.337;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.097;QD=9.63;ReadPosRankSum=0.607;SNPEFF_AMINO_ACID_CHANGE=A185;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2762504_2762642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221566    GT:AD:DP:GQ:PL    0/1:32,22:54:99:550,0,1042
19    2762767    rs76894839    G    A    140.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=17.6;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221566    GT:AD:DP:GQ:PL    0/1:3,5:8:99:171,0,104
19    2767192    rs1128925    G    T    155.60    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=17.29;ReadPosRankSum=-1.666;SNPEFF_AMINO_ACID_CHANGE=P78;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2767134_2767218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGTA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221566    GT:AD:DP:GQ:PL    0/1:2,7:9:42.04:186,0,42
19    2790394    rs1736176    G    A    631.55    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.835;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3391;MQ=60.0;MQ0=0;MQRankSum=-1.533;QD=12.15;ReadPosRankSum=1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307741    GT:AD:DP:GQ:PL    0/1:27,24:52:99:662,0,727
19    2796021    rs1736180    G    A    93.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.468;QD=7.76;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307741    GT:AD:DP:GQ:PL    0/1:8,4:12:99:123,0,250
19    2810248    rs1736184    G    A    31.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=5.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307741    GT:AD:DP:GQ:PL    0/1:3,3:6:61.44:61,0,80
19    2811788    rs2004186    T    C    355.97    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.757;DB;DP=37;Dels=0.0;FS=9.395;HRun=1;HaplotypeScore=1.7825;MQ=52.93;MQ0=0;MQRankSum=0.529;QD=9.62;ReadPosRankSum=1.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307741    GT:AD:DP:GQ:PL    0/1:14,22:37:99:386,0,250
19    2811831    rs8109055    T    C    251.98    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.846;DB;DP=32;Dels=0.0;FS=5.59;HRun=1;HaplotypeScore=2.3609;MQ=50.89;MQ0=0;MQRankSum=0.879;QD=7.87;ReadPosRankSum=-1.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307741    GT:AD:DP:GQ:PL    0/1:13,19:32:99:282,0,306
19    2811874    rs4807337    T    C    96.19    PASS    AB=0.154;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.27;DB;DP=13;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=52.84;MQ0=0;MQRankSum=-0.888;QD=7.4;ReadPosRankSum=-0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307741    GT:AD:DP:GQ:PL    0/1:2,11:13:65.48:126,0,65
19    2811889    rs8105590    C    T    39.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.715;MQ=55.21;MQ0=0;MQRankSum=0.741;QD=3.9;ReadPosRankSum=2.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307741    GT:AD:DP:GQ:PL    0/1:6,4:10:69.03:69,0,97
19    2811892    rs12972129    C    T    57.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.715;MQ=55.21;MQ0=0;MQRankSum=0.676;QD=5.74;ReadPosRankSum=1.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307741    GT:AD:DP:GQ:PL    0/1:5,5:10:87.39:87,0,105
19    2833576    rs8107668    G    A    889.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF554;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317243    GT:AD:DP:GQ:PL    1/1:0,26:26:69.22:923,69,0
19    2833617    rs8107771    G    A    1703.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF554;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317243    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1737,132,0
19    2834808    rs8102063    T    C    1075.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=C525;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2833679_2836733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF554;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317243    GT:AD:DP:GQ:PL    1/1:0,36:36:87.25:1109,87,0
19    2851331    rs4806879    A    G    120.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF555;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334241    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:153,12,0
19    2851678    rs11880407    A    T    446.71    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.987;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.367;MQ=59.47;MQ0=0;MQRankSum=0.413;QD=12.76;ReadPosRankSum=0.512;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF555;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334241    GT:AD:DP:GQ:PL    0/1:17,18:35:99:477,0,502
19    2853566    rs10412087    A    G    1186.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_AMINO_ACID_CHANGE=R501;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2852378_2860472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF555;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334241    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1219,90,0
19    2873462    rs144646894    A    C    383.57    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=33;Dels=0.0;FS=1.527;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.038;QD=11.62;ReadPosRankSum=0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF556;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307635    GT:AD:DP:GQ:PL    0/1:19,14:33:99:414,0,578
19    2878468    rs12973872    A    T    461.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.43;MQ0=0;QD=32.98;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF556;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307635    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:495,39,0
19    2896818    rs8100809    C    T    1844.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_AMINO_ACID_CHANGE=R414Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2896754_2897087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1877,138,0
19    2896948    rs8104326    T    C    2939.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=T371A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2896754_2897087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2973,232,0
19    2896953    rs8101379    A    G    2923.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.02;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=L369P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2896754_2897087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    1/1:0,95:95:99:2957,244,0
19    2897133    rs8103080    G    A    793.11    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.23;MQ0=0;MQRankSum=0.44;QD=13.22;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    0/1:34,26:60:99:823,0,1083
19    2897225    rs72269857    ATT    A    58.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=16;HaplotypeScore=74.7524;IndelType=D;MQ=54.75;MQ0=0;QD=8.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    1/1:1,6:7:11.88:100,12,0
19    2897245    rs12984902    A    G    158.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
19    2900841    rs12979208    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    2900865    rs10420989    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    2915738    rs2043336    T    A    3581    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=34.43;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF57;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000395204    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3581,262,0
19    2915814    .    CAG    C    628.02    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.084;DP=39;FS=9.457;HRun=0;HaplotypeScore=206.5269;IndelType=D;MQ=59.49;MQ0=0;MQRankSum=0.235;QD=16.1;ReadPosRankSum=0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306908    GT:AD:DP:GQ:PL    0/1:22,17:39:99:667,0,1106
19    2916048    rs2043335    T    A    1453.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306908    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1486,114,0
19    2916377    rs6510722    T    G    131.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306908    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
19    2917186    rs2288959    T    C    1399.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.79;MQ0=0;QD=30.42;SNPEFF_AMINO_ACID_CHANGE=T157;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2916922_2918344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523428    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1432,117,0
19    2917287    rs2288958    C    A    447.73    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.215;DB;DP=35;Dels=0.0;FS=2.958;HRun=4;HaplotypeScore=0.6651;MQ=59.34;MQ0=0;MQRankSum=-0.546;QD=12.79;ReadPosRankSum=-0.149;SNPEFF_AMINO_ACID_CHANGE=T191N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2916922_2918344;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF57;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523428    GT:AD:DP:GQ:PL    0/1:16,19:35:99:478,0,478
19    2917612    rs10410539    T    C    1136.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=T299;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2916922_2918344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF57;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523428    GT:AD:DP:GQ:PL    1/1:0,35:35:93.27:1169,93,0
19    2933480    rs3786948    C    T    2526.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.55;DB;DP=78;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=32.39;ReadPosRankSum=-1.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341064    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2560,153,0
19    2934282    rs3746073    T    C    1245.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=S281;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2933217_2934813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1278,102,0
19    2936443    rs7251272    A    G    229.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=25.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:262,21,0
19    2936623    rs4807371    C    T    1125.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_AMINO_ACID_CHANGE=E70;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2936522_2936702;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1159,87,0
19    2936884    rs4807372    G    A    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
19    2939062    rs4806890    T    C    99.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=15.441;HRun=2;HaplotypeScore=0.9967;MQ=44.64;MQ0=1;MQRankSum=0.361;QD=9.96;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    0/1:5,5:10:99:130,0,123
19    2939076    rs78850150    G    C    145.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.47;MQ0=1;MQRankSum=0.751;QD=14.52;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    1/1:1,9:10:15.05:178,15,0
19    2939268    rs10410034    A    G    590.80    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.041;DB;DP=45;Dels=0.0;FS=3.513;HRun=0;HaplotypeScore=0.9332;MQ=55.51;MQ0=0;MQRankSum=1.574;QD=13.13;ReadPosRankSum=-0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    0/1:21,23:45:99:621,0,627
19    2939289    rs12608916    A    C    737.32    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.51;DB;DP=46;Dels=0.0;FS=3.483;HRun=1;HaplotypeScore=0.0;MQ=56.36;MQ0=0;MQRankSum=0.148;QD=16.03;ReadPosRankSum=0.556;SNPEFF_AMINO_ACID_CHANGE=L40;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2939279_2939405;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    0/1:22,24:46:99:767,0,695
19    2939396    rs12609268    T    C    886.32    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=86;Dels=0.0;FS=0.845;HRun=1;HaplotypeScore=3.3453;MQ=58.26;MQ0=0;MQRankSum=0.345;QD=10.31;ReadPosRankSum=-0.704;SNPEFF_AMINO_ACID_CHANGE=I5V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2939279_2939405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    0/1:51,35:86:99:916,0,1368
19    2939401    rs12610412    C    G    927.37    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=87;Dels=0.0;FS=2.922;HRun=1;HaplotypeScore=1.612;MQ=58.72;MQ0=0;MQRankSum=-0.751;QD=10.66;ReadPosRankSum=-1.052;SNPEFF_AMINO_ACID_CHANGE=C3S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2939279_2939405;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF77;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314531    GT:AD:DP:GQ:PL    0/1:50,37:87:99:957,0,1407
19    2978135    rs79847088    G    C    77.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.49;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246112    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:108,0,25
19    2980269    rs4807380    G    A    66.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.638;QD=8.35;ReadPosRankSum=1.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246112    GT:AD:DP:GQ:PL    0/1:4,4:8:96.83:97,0,139
19    2981487    rs10407929    G    C    136.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.759;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=57.39;MQ0=0;MQRankSum=-0.151;QD=7.61;ReadPosRankSum=-1.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482627    GT:AD:DP:GQ:PL    0/1:12,6:18:99:167,0,352
19    2988912    rs66577462    ATTGAGGGGAGTC    A    445.21    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=109.7624;IndelType=D;MQ=46.37;MQ0=0;MQRankSum=-0.361;QD=49.47;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453329    GT:AD:DP:GQ:PL    0/1:4,5:9:99:484,0,725
19    2989380    rs3746075    C    G    429.51    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=23;Dels=0.0;FS=1.744;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.354;QD=18.67;ReadPosRankSum=-0.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453329    GT:AD:DP:GQ:PL    0/1:9,14:23:99:460,0,265
19    2989697    rs6510730    T    C    280.82    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.493;QD=12.21;ReadPosRankSum=0.462;SNPEFF_AMINO_ACID_CHANGE=D263;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_2989533_2989783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441927    GT:AD:DP:GQ:PL    0/1:12,11:23:99:311,0,397
19    2989810    rs504199    G    T    270.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=22;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=2.43;QD=12.3;ReadPosRankSum=-0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453329    GT:AD:DP:GQ:PL    0/1:11,11:22:99:301,0,321
19    2991612    rs10419284    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453329    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    2991814    rs428113    T    C    875.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453329    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:909,66,0
19    2993427    rs435806    T    C    411.08    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=27;Dels=0.0;FS=6.956;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.571;QD=15.23;ReadPosRankSum=2.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262953    GT:AD:DP:GQ:PL    0/1:13,14:27:99:441,0,351
19    2994814    rs439808    T    C    83.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262953    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    2994837    rs401886    A    G    43.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.9;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262953    GT:AD:DP:GQ:PL    0/1:1,3:4:30.63:74,0,31
19    2997976    rs416799    A    G    503.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.042;DB;DP=40;Dels=0.0;FS=2.814;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.52;QD=12.58;ReadPosRankSum=1.644;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246112    GT:AD:DP:GQ:PL    0/1:20,20:40:99:533,0,574
19    3006227    rs7249797    A    T    884.11    HaplotypeScoreFilter13    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=63;Dels=0.0;FS=4.175;HRun=0;HaplotypeScore=27.6019;MQ=56.23;MQ0=0;MQRankSum=-1.364;QD=14.03;ReadPosRankSum=-2.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439015    GT:AD:DP:GQ:PL    0/1:27,35:63:99:914,0,890
19    3006236    rs3050847    A    AAT    1341.69    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=5.675;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=322.9045;IndelType=I;MQ=56.43;MQ0=0;MQRankSum=-0.351;QD=26.83;ReadPosRankSum=0.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439015    GT:AD:DP:GQ:PL    0/1:24,26:50:99:1381,0,982
19    3006274    rs83488    C    T    615.67    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=3.664;DB;DP=38;Dels=0.0;FS=2.59;HRun=0;HaplotypeScore=4.9916;MQ=58.57;MQ0=0;MQRankSum=-0.72;QD=16.2;ReadPosRankSum=0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439015    GT:AD:DP:GQ:PL    0/1:16,22:38:99:646,0,421
19    3008989    rs77281807    C    A    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262953    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:78,6,0
19    3013616    rs216271    G    A    516.91    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.279;DB;DP=43;Dels=0.0;FS=3.305;HRun=0;HaplotypeScore=1.4942;MQ=59.46;MQ0=0;MQRankSum=-0.134;QD=12.02;ReadPosRankSum=-1.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262953    GT:AD:DP:GQ:PL    0/1:22,21:43:99:547,0,598
19    3014639    rs216273    A    G    75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.5;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262953    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,104
19    3017976    rs147508094    CAG    C    325.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=35.4889;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=-0.354;QD=27.14;ReadPosRankSum=-1.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262953    GT:AD:DP:GQ:PL    0/1:3,9:12:79.38:365,0,79
19    3028197    rs142034755    G    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262953    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    3053802    rs425485    T    C    231.45    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=12.18;ReadPosRankSum=0.83;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221561    GT:AD:DP:GQ:PL    0/1:8,11:19:99:261,0,219
19    3061344    rs62125457    G    A    108.95    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=9.9;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AES;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221561    GT:AD:DP:GQ:PL    0/1:6,5:11:99:139,0,155
19    3110349    rs11085000    T    G    497.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:530,42,0
19    3110515    rs172613    A    G    33.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:65,6,0
19    3110585    rs217611    A    G    37.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
19    3113156    rs55702727    G    A    117.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.66;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    0/1:2,4:6:56.72:148,0,57
19    3113176    rs308064    C    T    245.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
19    3113305    rs1682811    G    C    1078.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=30.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    1/1:0,35:35:84.27:1111,84,0
19    3114864    rs3746069    C    T    204.64    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=12.04;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    0/1:9,8:17:99:235,0,324
19    3119184    rs308046    T    G    2045.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=29.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2079,168,0
19    3119239    rs4900    C    T    2501.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7653;MQ=59.38;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=T257;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3119204_3119357;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2535,190,0
19    3120739    rs1682801    T    G    76.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=25.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
19    3121247    rs11549609    C    T    42.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078429    GT:AD:DP:GQ:PL    0/1:2,2:4:13.67:73,0,14
19    3148552    rs111452853    C    G    76.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
19    3149990    rs170159    G    C    72.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:105,9,0
19    3150238    rs310680    A    G    935.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=30.18;SNPEFF_AMINO_ACID_CHANGE=Y147C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3150129_3150283;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    1/1:0,31:31:75.20:969,75,0
19    3150418    rs2302063    C    A    332.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
19    3151686    rs72983023    A    C    345.37    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.03;MQ0=0;MQRankSum=1.909;QD=7.2;ReadPosRankSum=0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    0/1:31,17:48:99:375,0,926
19    3155736    rs2074864    T    C    346.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:379,30,0
19    3157885    rs61758985    T    C    1464.62    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=2.983;DB;DP=114;Dels=0.0;FS=0.768;HRun=0;HaplotypeScore=0.5784;MQ=58.98;MQ0=0;MQRankSum=-0.446;QD=12.85;ReadPosRankSum=0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    0/1:61,53:114:99:1495,0,1764
19    3157887    rs72983041    A    G    1456.20    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=113;Dels=0.0;FS=0.776;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.985;QD=12.89;ReadPosRankSum=0.624;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    0/1:60,53:113:99:1486,0,1741
19    3157916    rs66509881    C    T    1162.49    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.906;DB;DP=81;Dels=0.0;FS=1.124;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=2.146;QD=14.35;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1192,0,1288
19    3158116    rs1682802    C    G    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNA15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262958    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
19    3186085    rs11551095    G    T    81.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=10.925;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=6.75;ReadPosRankSum=0.6;SNPEFF_AMINO_ACID_CHANGE=P19;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3185875_3186212;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:8,4:12:99:111,0,230
19    3193146    rs496342    C    G    79.76    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.95;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:1,4:5:25.76:110,0,26
19    3193180    rs538197    C    G    148.19    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.055;DB;DP=17;Dels=0.0;FS=4.523;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.955;QD=8.72;ReadPosRankSum=0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:11,6:17:99:178,0,402
19    3193484    rs499877    A    G    79.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.89;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:4,4:8:99:109,0,100
19    3198695    rs311620    C    G    132.04    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=3.522;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=14.67;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:4,5:9:99:162,0,102
19    3198777    rs311621    A    G    477.60    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.952;DB;DP=28;Dels=0.0;FS=4.301;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.59;QD=17.06;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:9,19:28:99:508,0,287
19    3204172    rs8106438    A    G    108.54    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=15.51;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:2,5:7:59.43:139,0,59
19    3207338    rs312068    T    C    1552.44    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.845;DB;DP=97;Dels=0.0;FS=2.851;HRun=0;HaplotypeScore=0.734;MQ=59.52;MQ0=0;MQRankSum=0.097;QD=16.0;ReadPosRankSum=0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:42,55:97:99:1582,0,1269
19    3207348    rs312069    G    C    1659.75    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=5.341;DB;DP=111;Dels=0.0;FS=6.312;HRun=2;HaplotypeScore=3.4771;MQ=59.58;MQ0=0;MQRankSum=-0.943;QD=14.95;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCLN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246117    GT:AD:DP:GQ:PL    0/1:52,59:111:99:1690,0,1343
19    3273818    rs312928    T    C    316.69    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=1.361;DB;DP=57;Dels=0.0;FS=5.186;HRun=2;HaplotypeScore=3.6176;MQ=59.19;MQ0=0;MQRankSum=0.369;QD=5.56;ReadPosRankSum=-1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292672    GT:AD:DP:GQ:PL    0/1:40,17:57:99:347,0,1161
19    3278206    rs11879556    G    A    110.31    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=22.06;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292672    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:140,0,26
19    3281944    rs34139199    G    T    470.36    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=4.295;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.489;QD=18.09;ReadPosRankSum=-1.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292672    GT:AD:DP:GQ:PL    0/1:12,14:26:99:500,0,344
19    3284819    rs3746064    T    C    252.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.467;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.84;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292672    GT:AD:DP:GQ:PL    0/1:6,9:15:99:283,0,123
19    3293302    .    C    T    485.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.241;DP=32;Dels=0.0;FS=2.124;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.031;QD=15.18;ReadPosRankSum=-0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292672    GT:AD:DP:GQ:PL    0/1:16,16:32:99:516,0,362
19    3293593    rs313784    A    G    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292672    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
19    3366786    rs3764589    G    T    110.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269778    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:143,12,0
19    3382274    rs2074944    C    T    470.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.82;MQ0=0;QD=29.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269778    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:504,39,0
19    3433694    rs35065359    AC    A    230.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=5;HaplotypeScore=31.6749;IndelType=D;MQ=56.85;MQ0=0;QD=25.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269778    GT:AD:DP:GQ:PL    1/1:1,8:9:24.07:272,24,0
19    3434028    rs2074977    A    C    162.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269778    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
19    3434413    rs2302220    C    G    1474.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.53;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269778    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1507,117,0
19    3435254    rs2072349    T    C    80.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269778    GT:AD:DP:GQ:PL    1/1:0,4:5:9.03:113,9,0
19    3533274    rs740681    G    A    471.46    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.235;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=1.233;QD=12.09;ReadPosRankSum=0.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389395    GT:AD:DP:GQ:PL    0/1:18,21:39:99:501,0,470
19    3534842    rs10155    G    A    378.67    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.345;DB;DP=34;Dels=0.0;FS=1.427;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.018;QD=11.14;ReadPosRankSum=0.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389395    GT:AD:DP:GQ:PL    0/1:21,13:34:99:409,0,564
19    3544665    rs150041717    G    A    173.33    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=19.26;ReadPosRankSum=-0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329493    GT:AD:DP:GQ:PL    0/1:2,7:9:60.81:203,0,61
19    3544971    rs12976454    C    T    137.51    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=17.19;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329493    GT:AD:DP:GQ:PL    0/1:3,5:8:53.13:168,0,53
19    3548057    rs6510759    T    C    235.96    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=20;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.9159;MQ=52.39;MQ0=0;MQRankSum=0.369;QD=11.8;ReadPosRankSum=0.685;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf71;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329493    GT:AD:DP:GQ:PL    0/1:6,13:20:99:266,0,104
19    3575343    rs56208656    G    A    42.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMG20B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470356    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:72,0,24
19    3578653    rs939209    C    T    226.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.432;DB;DP=28;Dels=0.0;FS=3.751;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=1.043;QD=8.1;ReadPosRankSum=-1.14;SNPEFF_AMINO_ACID_CHANGE=P191L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3578613_3578723;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HMG20B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402569    GT:AD:DP:GQ:PL    0/1:14,14:28:99:257,0,419
19    3586471    rs8100350    A    G    335.15    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=17.64;ReadPosRankSum=1.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322315    GT:AD:DP:GQ:PL    0/1:6,13:19:99:365,0,178
19    3586543    rs8113232    G    A    475.77    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=43;Dels=0.0;FS=5.295;HRun=0;HaplotypeScore=0.0;MQ=57.43;MQ0=0;MQRankSum=2.496;QD=11.06;ReadPosRankSum=-0.832;SNPEFF_AMINO_ACID_CHANGE=L92;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3586493_3586678;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322315    GT:AD:DP:GQ:PL    0/1:26,17:43:99:506,0,822
19    3589339    rs4806942    G    A    124.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=12.43;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322315    GT:AD:DP:GQ:PL    0/1:4,6:10:99:154,0,138
19    3589380    .    G    C    206.61    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.785;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.034;QD=8.98;ReadPosRankSum=1.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322315    GT:AD:DP:GQ:PL    0/1:14,9:23:99:237,0,446
19    3589413    rs10406702    T    C    349.13    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DB;DP=40;Dels=0.0;FS=1.642;HRun=0;HaplotypeScore=3.18;MQ=59.42;MQ0=0;MQRankSum=-1.015;QD=8.73;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322315    GT:AD:DP:GQ:PL    0/1:26,14:40:99:379,0,738
19    3589435    rs10426399    C    T    482.46    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=11.22;ReadPosRankSum=-2.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322315    GT:AD:DP:GQ:PL    0/1:25,18:43:99:512,0,791
19    3589768    rs28532669    G    A    623.31    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.211;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.023;QD=20.78;ReadPosRankSum=1.806;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBXA2R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375190    GT:AD:DP:GQ:PL    0/1:8,22:30:99:653,0,219
19    3595032    rs5758    C    T    103.71    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.365;QD=8.64;ReadPosRankSum=2.383;SNPEFF_AMINO_ACID_CHANGE=T342;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3594504_3595074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBXA2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411851    GT:AD:DP:GQ:PL    0/1:7,5:12:99:134,0,183
19    3595794    rs4523    A    G    111.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=2.219;QD=12.35;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=Y308;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3594504_3595931;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBXA2R;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375190    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,116
19    3611146    rs2074786    A    G    849.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221899    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:882,72,0
19    3611186    rs758016    C    T    1131.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221899    GT:AD:DP:GQ:PL    1/1:0,36:36:87.27:1165,87,0
19    3611190    rs758017    C    A    1144.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221899    GT:AD:DP:GQ:PL    1/1:0,37:37:87.27:1178,87,0
19    3611972    rs2158935    G    A    1459.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=35.59;SNPEFF_AMINO_ACID_CHANGE=V82I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3611566_3612411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1492,111,0
19    3613346    rs2074789    G    A    206.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_AMINO_ACID_CHANGE=R325H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3613056_3613366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:239,21,0
19    3613400    rs2240504    C    G    173.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:207,18,0
19    3613422    rs2074790    G    A    240.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:273,21,0
19    3613596    rs57918402    A    G    470.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:504,39,0
19    3614403    rs7255692    T    C    387.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_AMINO_ACID_CHANGE=R378;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3614384_3614590;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:421,33,0
19    3614850    rs2074792    G    T    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    3618688    rs3746126    A    C    39.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=0.736;QD=13.21;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:71,6,0
19    3620606    rs73920180    A    G    92.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=15.44;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf29OS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447295    GT:AD:DP:GQ:PL    0/1:2,4:6:64.94:123,0,65
19    3641672    rs3815338    C    T    592.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:626,48,0
19    3643093    rs1004323    G    A    398.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    1/1:0,12:12:36.07:431,36,0
19    3643974    rs35178788    G    A    60.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=6.06;ReadPosRankSum=-1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    0/1:6,4:10:90.55:91,0,204
19    3644062    rs73920196    G    A    346.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.077;DB;DP=24;Dels=0.0;FS=6.56;HRun=0;HaplotypeScore=1.9142;MQ=60.0;MQ0=0;MQRankSum=-1.022;QD=14.42;ReadPosRankSum=-0.692;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    0/1:12,12:24:99:376,0,292
19    3645947    rs12460780    G    A    1317.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1350,105,0
19    3653525    rs2074957    C    T    1195.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.48;MQ0=0;QD=33.22;SNPEFF_AMINO_ACID_CHANGE=S228;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3653288_3653587;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    1/1:0,36:36:96.30:1229,96,0
19    3656652    rs10432303    G    A    158.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
19    3660944    rs3826944    G    A    2396.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.41;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2429,178,0
19    3661916    rs115136413    G    A    75.48    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=6.29;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=D101;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3661869_3661999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    0/1:7,5:12:99:105,0,178
19    3667461    rs7257360    T    C    247.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIP5K1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335312    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:281,24,0
19    3728495    rs58440297    CCT    C    385.01    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=51.136;IndelType=D;MQ=59.24;MQ0=0;MQRankSum=0.271;QD=24.06;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262968    GT:AD:DP:GQ:PL    0/1:6,10:16:99:424,0,317
19    3730041    rs7258176    C    T    736.76    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.969;DB;DP=57;Dels=0.0;FS=1.029;HRun=1;HaplotypeScore=1.4679;MQ=59.19;MQ0=0;MQRankSum=0.393;QD=12.93;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=I22;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3730026_3730128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539908    GT:AD:DP:GQ:PL    0/1:31,26:57:99:767,0,962
19    3734175    rs3746122    G    C    60.47    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.05;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262968    GT:AD:DP:GQ:PL    0/1:7,3:10:90.47:90,0,206
19    3738649    rs599587    A    C    281.55    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.134;DB;DP=34;Dels=0.0;FS=1.758;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.019;QD=8.28;ReadPosRankSum=-2.07;SNPEFF_AMINO_ACID_CHANGE=R425;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3738553_3738661;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539908    GT:AD:DP:GQ:PL    0/1:18,15:34:99:312,0,615
19    3738971    rs600986    A    G    365.99    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.208;DB;DP=40;Dels=0.0;FS=1.378;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.823;QD=9.15;ReadPosRankSum=0.043;SNPEFF_AMINO_ACID_CHANGE=P454;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3738895_3739132;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539908    GT:AD:DP:GQ:PL    0/1:25,15:40:99:396,0,701
19    3744159    rs614717    C    T    76.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262968    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
19    3744171    rs35547494    G    A    34.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=11.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262968    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:64,0,34
19    3746087    rs501168    G    A    199.91    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=19.99;ReadPosRankSum=-0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316757    GT:AD:DP:GQ:PL    0/1:2,8:10:9.52:230,0,10
19    3749971    rs7257905    A    G    78.46    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=8.72;ReadPosRankSum=-0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316757    GT:AD:DP:GQ:PL    0/1:5,4:9:99:108,0,172
19    3750205    rs112535745    T    TGG    631.22    PASS    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.051;DB;DP=52;FS=1.295;HRun=4;HaplotypeScore=147.1542;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=-0.377;QD=12.14;ReadPosRankSum=0.148;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316757    GT:AD:DP:GQ:PL    0/1:37,15:52:99:670,0,1139
19    3750689    rs34278595    G    C    209.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316757    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
19    3752874    rs8102086    A    G    235.82    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.55;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.099;QD=10.72;ReadPosRankSum=-0.89;SNPEFF_AMINO_ACID_CHANGE=C376R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3752818_3752988;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316757    GT:AD:DP:GQ:PL    0/1:10,12:22:99:266,0,341
19    3753148    rs10414283    A    C    34.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262968    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
19    3753152    rs10411927    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TJP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262968    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    3753769    rs3746120    C    T    43.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.99;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=A335;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3753763_3753924;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316757    GT:AD:DP:GQ:PL    0/1:2,2:4:35.73:74,0,36
19    3760334    rs60648147    C    A    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316757    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    3762698    rs13960    C    T    1580.06    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=111;Dels=0.0;FS=20.192;HRun=1;HaplotypeScore=2.8603;MQ=59.38;MQ0=0;MQRankSum=-0.085;QD=14.23;ReadPosRankSum=0.092;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APBA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316757    GT:AD:DP:GQ:PL    0/1:57,54:111:99:1610,0,1632
19    3762926    rs7245624    G    A    63.60    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=5.78;ReadPosRankSum=1.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330133    GT:AD:DP:GQ:PL    0/1:8,3:11:93.59:94,0,263
19    3767265    rs7239    C    T    216.45    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.582;DB;DP=20;Dels=0.0;FS=6.16;HRun=2;HaplotypeScore=0.8667;MQ=57.88;MQ0=0;MQRankSum=0.81;QD=10.82;ReadPosRankSum=0.656;SNPEFF_AMINO_ACID_CHANGE=F97;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3767259_3767562;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330133    GT:AD:DP:GQ:PL    0/1:12,8:20:99:246,0,392
19    3770965    rs79588413    G    A    121.94    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=11;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.036;QD=11.09;ReadPosRankSum=-1.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330133    GT:AD:DP:GQ:PL    0/1:4,7:11:99:152,0,130
19    3778219    rs35351680    C    T    72.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=10.41;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A455T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3777968_3778420;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395040    GT:AD:DP:GQ:PL    0/1:3,4:7:62.31:103,0,62
19    3779014    rs36072143    C    A    339.61    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=28;Dels=0.0;FS=3.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.138;QD=12.13;ReadPosRankSum=0.599;SNPEFF_AMINO_ACID_CHANGE=T350;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3778990_3779185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395040    GT:AD:DP:GQ:PL    0/1:15,13:28:99:370,0,414
19    3779506    rs2066769    C    CG    155.91    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=33.4098;IndelType=I;MQ=58.2;MQ0=0;MQRankSum=-1.309;QD=11.99;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310132    GT:AD:DP:GQ:PL    0/1:7,6:13:99:195,0,258
19    3779657    rs2066772    C    T    322.90    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=25;Dels=0.0;FS=2.007;HRun=0;HaplotypeScore=0.9159;MQ=59.07;MQ0=0;MQRankSum=-0.637;QD=12.92;ReadPosRankSum=-0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310132    GT:AD:DP:GQ:PL    0/1:11,14:25:99:353,0,377
19    3779934    rs12610723    A    C    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310132    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    3781557    rs12610731    C    T    501.02    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.76;MQ0=0;MQRankSum=-1.327;QD=8.95;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310132    GT:AD:DP:GQ:PL    0/1:30,26:56:99:531,0,828
19    3784757    rs2074976    T    G    119.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310132    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
19    3785223    rs4807509    T    G    271.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395040    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:304,24,0
19    3806162    rs8109765    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262961    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    3807276    rs56083710    C    G    147.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.248;QD=16.35;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262961    GT:AD:DP:GQ:PL    0/1:3,6:9:60.68:177,0,61
19    3811457    rs10413220    G    C    38.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.66;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262961    GT:AD:DP:GQ:PL    0/1:2,2:4:43.16:69,0,43
19    3831709    rs2240234    C    T    122.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_AMINO_ACID_CHANGE=V183M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3831658_3831876;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262961    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
19    3910933    rs4807527    G    A    853.61    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.852;DB;DP=65;Dels=0.0;FS=6.045;HRun=0;HaplotypeScore=1.811;MQ=59.65;MQ0=0;MQRankSum=0.134;QD=13.13;ReadPosRankSum=-0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATCAY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301260    GT:AD:DP:GQ:PL    0/1:32,31:65:99:884,0,1129
19    3911012    rs4807528    T    A    202.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.208;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=58.91;MQ0=0;MQRankSum=1.523;QD=12.63;ReadPosRankSum=1.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATCAY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301260    GT:AD:DP:GQ:PL    0/1:8,8:16:99:232,0,266
19    3911142    rs4806963    T    A    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATCAY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301260    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    3918721    rs11667520    A    G    285.88    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.317;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=59.36;MQ0=0;MQRankSum=0.0;QD=9.86;ReadPosRankSum=-0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATCAY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301260    GT:AD:DP:GQ:PL    0/1:14,15:29:99:316,0,450
19    3961533    rs76315900    G    A    59.18    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=5.38;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DAPK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301264    GT:AD:DP:GQ:PL    0/1:8,3:11:89.18:89,0,261
19    3976863    rs62130414    C    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
19    3977486    rs36527    A    G    33.19    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=1.38;QD=4.74;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Y730;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3977426_3977608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:5,2:7:63.18:63,0,146
19    3979156    rs62130415    G    C    68.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.4;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:3,3:6:98.37:98,0,102
19    3979408    rs36526    A    G    553.37    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.189;DB;DP=41;Dels=0.0;FS=2.974;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.258;QD=13.5;ReadPosRankSum=0.449;SNPEFF_AMINO_ACID_CHANGE=H544;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3979327_3979434;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:22,19:41:99:583,0,703
19    3980367    rs17606942    G    T    37.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:1,2:3:14.67:68,0,15
19    3980824    rs36525    A    G    104.74    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=11.64;ReadPosRankSum=-2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:4,5:9:99:135,0,106
19    3981526    rs45443207    A    G    361.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.473;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=58.73;MQ0=0;MQRankSum=1.359;QD=10.95;ReadPosRankSum=0.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:18,15:33:99:391,0,598
19    3982967    rs2230561    G    A    384.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.037;QD=18.33;ReadPosRankSum=0.933;SNPEFF_AMINO_ACID_CHANGE=R150;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3982805_3983016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:7,14:21:99:415,0,178
19    3983184    rs2230560    A    G    216.93    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.279;DB;DP=30;Dels=0.0;FS=12.067;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.295;QD=7.23;ReadPosRankSum=-1.623;SNPEFF_AMINO_ACID_CHANGE=H108;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_3983108_3983289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:20,9:30:99:247,0,588
19    3983302    rs2305107    G    A    134.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=10;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.361;QD=13.42;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:4,6:10:99:164,0,129
19    3984453    rs8100131    G    A    180.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=20.02;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    0/1:3,6:9:98.13:210,0,98
19    3985250    rs62131469    C    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309311    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
19    4013322    rs2289865    T    C    1061.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=31.21;SNPEFF_AMINO_ACID_CHANGE=D143;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4012921_4013347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262971    GT:AD:DP:GQ:PL    1/1:0,34:34:87.26:1094,87,0
19    4013389    rs7257356    C    T    299.06    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.657;DB;DP=17;Dels=0.0;FS=6.021;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.681;QD=17.59;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262971    GT:AD:DP:GQ:PL    0/1:6,11:17:99:329,0,177
19    4024020    rs2028827    G    A    742.42    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=2.772;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.87;MQ0=0;MQRankSum=0.696;QD=18.11;ReadPosRankSum=-0.565;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262971    GT:AD:DP:GQ:PL    0/1:18,23:41:99:772,0,417
19    4027852    rs4517905    C    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    4028067    rs4520954    C    T    590.56    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.944;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.0;QD=14.76;ReadPosRankSum=-0.662;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262971    GT:AD:DP:GQ:PL    0/1:19,21:40:99:621,0,559
19    4028290    rs72976957    G    A    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262971    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    4033462    rs7255988    T    C    101.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=12;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.48;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=C342;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4033418_4033578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262971    GT:AD:DP:GQ:PL    0/1:8,4:12:99:132,0,209
19    4037322    rs75488612    G    A    105.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=15.06;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016586.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535853    GT:AD:DP:GQ:PL    0/1:3,4:7:99:135,0,103
19    4037525    rs2305106    C    T    359.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.89;DB;DP=18;Dels=0.0;FS=2.622;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=19.95;ReadPosRankSum=1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC016586.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535853    GT:AD:DP:GQ:PL    0/1:6,12:18:99:389,0,120
19    4042077    rs4410205    C    A    499.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIAS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262971    GT:AD:DP:GQ:PL    1/1:0,14:15:39.13:532,39,0
19    4097249    .    G    A    34.31    QDFilter2    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DP=27;Dels=0.0;FS=9.944;HRun=4;HaplotypeScore=11.4797;MQ=43.16;MQ0=0;MQRankSum=-1.691;QD=1.27;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465472    GT:AD:DP:GQ:PL    0/1:14,13:27:64.30:64,0,428
19    4099187    rs350911    T    C    266.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465472    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:300,24,0
19    4101062    rs10250    G    T    200.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.7;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=I123;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4101017_4101141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394867    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
19    4117528    rs8157    G    A    877.57    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=5.075;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7579;MQ=58.18;MQ0=0;MQRankSum=1.319;QD=11.4;ReadPosRankSum=-0.845;SNPEFF_AMINO_ACID_CHANGE=V64;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4117417_4117627;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262948    GT:AD:DP:GQ:PL    0/1:47,30:77:99:908,0,1063
19    4117705    rs350890    T    C    281.36    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.713;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.016;QD=12.23;ReadPosRankSum=0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262948    GT:AD:DP:GQ:PL    0/1:13,10:23:99:311,0,454
19    4153659    rs350879    G    A    170.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_4153629_4153771;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078445    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
19    4154651    rs350877    A    G    32.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078445    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
19    4156841    rs350872    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078445    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
19    4156881    rs350871    G    A    223.01    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=20.27;ReadPosRankSum=1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078445    GT:AD:DP:GQ:PL    0/1:3,8:11:89.57:253,0,90
19    4169998    rs350852    G    A    116.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.14;MQ0=0;QD=29.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305232    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
19    4170378    rs350851    G    A    286.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.7;MQ0=0;QD=35.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305232    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
19    4174950    rs350845    A    G    196.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=16.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078445    GT:AD:DP:GQ:PL    1/1:0,12:12:18.05:229,18,0
19    4177051    rs350844    A    G    415.83    PASS    AB=0.105;AC=1;AF=0.50;AN=2;BaseQRankSum=0.332;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=21.89;ReadPosRankSum=0.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078445    GT:AD:DP:GQ:PL    0/1:2,17:19:2.66:445,0,3
19    4177331    rs350843    A    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CREB3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000078445    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    4180690    rs7260071    T    G    200.31    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=16;Dels=0.0;FS=12.041;HRun=1;HaplotypeScore=0.5784;MQ=57.05;MQ0=0;MQRankSum=0.212;QD=12.52;ReadPosRankSum=0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305232    GT:AD:DP:GQ:PL    0/1:9,7:16:99:230,0,302
19    4180836    rs352493    C    T    315.66    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.191;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.2;MQ0=0;MQRankSum=-0.139;QD=12.14;ReadPosRankSum=-0.804;SNPEFF_AMINO_ACID_CHANGE=S46N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4180779_4180906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRT6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305232    GT:AD:DP:GQ:PL    0/1:16,10:26:99:346,0,402
19    4200156    rs2052191    G    A    134.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=13.41;ReadPosRankSum=1.453;SNPEFF_AMINO_ACID_CHANGE=A111T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4200080_4200168;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318934    GT:AD:DP:GQ:PL    0/1:5,5:10:99:164,0,136
19    4200206    rs2052192    A    G    197.64    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.733;QD=19.76;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262970    GT:AD:DP:GQ:PL    0/1:2,8:10:59.91:228,0,60
19    4201805    rs11672646    G    T    34.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.6;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262970    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:65,0,32
19    4209918    rs10402675    C    G    64.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=21.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262970    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
19    4210017    rs67953324    G    A    151.64    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=21.66;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262970    GT:AD:DP:GQ:PL    0/1:1,6:7:18.92:182,0,19
19    4212345    rs10417017    T    G    34.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=4.92;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262970    GT:AD:DP:GQ:PL    0/1:4,3:7:64.40:64,0,146
19    4216910    rs10413818    G    A    312.20    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=58.84;MQ0=0;MQRankSum=1.999;QD=15.61;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=E585K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4216547_4218160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318934    GT:AD:DP:GQ:PL    0/1:9,10:20:99:342,0,228
19    4217207    rs353693    T    G    348.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=S684A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4216547_4218160;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318934    GT:AD:DP:GQ:PL    1/1:0,11:11:30.05:382,30,0
19    4219374    rs11670819    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262970    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    4236996    rs4740    G    A    566.94    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=2.568;DB;DP=33;Dels=0.0;FS=3.037;HRun=0;HaplotypeScore=0.0;MQ=53.36;MQ0=0;MQRankSum=1.585;QD=17.18;ReadPosRankSum=-0.674;SNPEFF_AMINO_ACID_CHANGE=V201I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4236933_4237515;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBI3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221847    GT:AD:DP:GQ:PL    0/1:14,19:33:99:597,0,349
19    4237067    rs4905    A    G    171.85    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=24;Dels=0.0;FS=10.65;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;MQRankSum=-0.217;QD=7.16;ReadPosRankSum=0.093;SNPEFF_AMINO_ACID_CHANGE=T224;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4236933_4237515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EBI3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221847    GT:AD:DP:GQ:PL    0/1:10,13:24:99:202,0,240
19    4250917    rs3803907    G    A    175.76    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.954;QD=13.52;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262962    GT:AD:DP:GQ:PL    0/1:7,6:13:99:206,0,213
19    4250991    rs3803908    A    G    566.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.646;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.148;QD=18.88;ReadPosRankSum=1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262962    GT:AD:DP:GQ:PL    0/1:12,18:30:99:596,0,413
19    4251069    rs1045750    T    C    546.17    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.838;DB;DP=45;Dels=0.0;FS=4.441;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.333;QD=12.14;ReadPosRankSum=-1.0;SNPEFF_AMINO_ACID_CHANGE=N57;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4251024_4251168;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC94;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262962    GT:AD:DP:GQ:PL    0/1:26,19:45:99:576,0,747
19    4254211    rs10853970    T    C    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262962    GT:AD:DP:GQ:PL    0/1:2,2:4:66.40:71,0,66
19    4254308    rs11085067    T    C    329.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.673;QD=11.77;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262962    GT:AD:DP:GQ:PL    0/1:16,12:28:99:360,0,508
19    4254375    rs11085068    C    T    267.35    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=32;Dels=0.0;FS=3.399;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.192;QD=8.35;ReadPosRankSum=-0.652;SNPEFF_AMINO_ACID_CHANGE=Y98;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4254352_4254486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC94;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262962    GT:AD:DP:GQ:PL    0/1:19,13:32:99:297,0,583
19    4268543    rs4807565    G    C    78.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=13.08;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262962    GT:AD:DP:GQ:PL    0/1:3,3:6:99:108,0,109
19    4280186    rs10419363    C    T    242.05    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.107;QD=14.24;ReadPosRankSum=-0.474;SNPEFF_AMINO_ACID_CHANGE=F42;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4278598_4280357;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543264    GT:AD:DP:GQ:PL    0/1:5,12:17:93.76:272,0,94
19    4283056    rs138118908    C    A    380.56    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.324;DB;DP=35;Dels=0.0;FS=2.928;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.208;QD=10.87;ReadPosRankSum=1.179;SNPEFF_AMINO_ACID_CHANGE=P137T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4283051_4283239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543264    GT:AD:DP:GQ:PL    0/1:19,16:35:99:411,0,642
19    4288184    rs2380178    C    T    677.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIGD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301272    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:711,54,0
19    4288205    rs888928    T    C    768.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIGD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301272    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:801,60,0
19    4288220    rs888929    C    T    937.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIGD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301272    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:971,72,0
19    4288332    rs888930    A    G    639.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=N185S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4288240_4288359;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221852    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:672,51,0
19    4292362    rs6510800    G    A    38.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221852    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
19    4292597    rs888932    C    T    2313.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=59.11;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=*283;SNPEFF_CODON_CHANGE=tGa/tAa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_19_4292237_4292882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIGD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301272    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2347,178,0
19    4294356    rs8099850    G    T    82.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221852    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
19    4294623    rs58237134    C    A    1473.28    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=121;Dels=0.0;FS=8.974;HRun=1;HaplotypeScore=4.5647;MQ=59.46;MQ0=0;MQRankSum=0.094;QD=12.18;ReadPosRankSum=0.889;SNPEFF_AMINO_ACID_CHANGE=W168L;SNPEFF_CODON_CHANGE=tGg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4294564_4294677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIGD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301272    GT:AD:DP:GQ:PL    0/1:61,60:121:99:1503,0,1693
19    4294807    rs78320454    G    A    220.36    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.97;MQ0=0;MQRankSum=1.51;QD=9.58;ReadPosRankSum=-1.182;SNPEFF_AMINO_ACID_CHANGE=P138L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4294772_4294813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIGD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301272    GT:AD:DP:GQ:PL    0/1:12,11:23:99:250,0,363
19    4297855    rs112590213    TA    T    393.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275;DB;DP=50;FS=0.0;HRun=16;HaplotypeScore=348.2399;IndelType=D;MQ=54.2;MQ0=0;MQRankSum=1.457;QD=7.87;ReadPosRankSum=0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIGD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301272    GT:AD:DP:GQ:PL    1/1:7,38:50:39.79:436,40,0
19    4297968    rs6510801    C    T    2432.35    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.958;DB;DP=180;Dels=0.0;FS=5.399;HRun=0;HaplotypeScore=1.7287;MQ=58.21;MQ0=0;MQRankSum=-0.266;QD=13.51;ReadPosRankSum=-0.622;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMIGD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301272    GT:AD:DP:GQ:PL    0/1:92,88:180:99:2462,0,2444
19    4306311    rs4807578    T    C    461.02    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.095;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=58.87;MQ0=0;MQRankSum=-0.257;QD=11.24;ReadPosRankSum=-0.852;SNPEFF_AMINO_ACID_CHANGE=R76;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4306195_4306326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221856    GT:AD:DP:GQ:PL    0/1:21,20:41:99:491,0,542
19    4310327    rs11879976    C    T    3108.59    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.519;DB;DP=193;DS;Dels=0.0;FS=6.543;HRun=0;HaplotypeScore=0.0;MQ=59.88;MQ0=0;MQRankSum=-0.147;QD=16.11;ReadPosRankSum=0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221856    GT:AD:DP:GQ:PL    0/1:80,113:193:99:3139,0,2224
19    4310722    rs11883395    T    G    128.05    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=11.64;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221856    GT:AD:DP:GQ:PL    0/1:6,5:11:99:158,0,179
19    4310755    rs3745988    T    C    35.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.77;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221856    GT:AD:DP:GQ:PL    0/1:2,2:4:63.41:65,0,63
19    4310796    rs36112398    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221856    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    4312182    rs6510804    T    C    106.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=26.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221856    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:139,12,0
19    4325327    rs10411394    G    A    1499.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221856    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1532,117,0
19    4325433    rs1138253    G    A    2347.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.05;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=P313;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4325393_4325542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314714    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2381,187,0
19    4327359    .    T    C    507.45    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.515;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.407;QD=11.03;ReadPosRankSum=-1.318;SNPEFF_AMINO_ACID_CHANGE=K205R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4327313_4327382;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314714    GT:AD:DP:GQ:PL    0/1:26,20:46:99:537,0,799
19    4331940    rs10600755    AAAAG    A    489.60    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=3.264;DB;DP=23;FS=2.43;HRun=0;HaplotypeScore=108.0838;IndelType=D;MQ=57.28;MQ0=0;MQRankSum=0.495;QD=21.29;ReadPosRankSum=-0.297;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314714    GT:AD:DP:GQ:PL    0/1:11,12:23:99:529,0,625
19    4332105    rs7258060    A    T    272.36    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.913;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.039;QD=11.84;ReadPosRankSum=0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314714    GT:AD:DP:GQ:PL    0/1:14,9:23:99:302,0,467
19    4333666    rs10413905    T    C    494.38    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.507;QD=14.54;ReadPosRankSum=0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314714    GT:AD:DP:GQ:PL    0/1:14,20:34:99:524,0,366
19    4333711    rs7247504    C    T    985.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=D93N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4333691_4333813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314714    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1018,78,0
19    4353174    rs11085070    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262966    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    4357555    rs4807583    A    G    522.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_AMINO_ACID_CHANGE=S353;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4357512_4357582;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPND;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359935    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:555,42,0
19    4402840    rs77734548    G    A    34.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301280    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
19    4408751    rs243347    A    G    315.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=24.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAF1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301280    GT:AD:DP:GQ:PL    1/1:0,13:13:30.08:348,30,0
19    4442999    rs243383    T    G    1535.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_AMINO_ACID_CHANGE=S777A;SNPEFF_CODON_CHANGE=Tcg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4442978_4443022;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAF1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535117    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1569,132,0
19    4448480    rs62130982    G    A    68.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=17.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301281    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:101,9,0
19    4453324    rs376965    T    C    128.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301281    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
19    4454000    rs11909    G    A    1778.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=37.83;SNPEFF_AMINO_ACID_CHANGE=A58;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4453927_4454090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301281    GT:AD:DP:GQ:PL    1/1:0,46:47:99:1811,135,0
19    4457457    rs10425294    C    G    44.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301281    GT:AD:DP:GQ:PL    1/1:0,4:4:8.99:77,9,0
19    4457458    rs10423797    G    C    44.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBXN6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301281    GT:AD:DP:GQ:PL    1/1:0,4:4:8.99:77,9,0
19    4475606    rs3816048    T    C    738.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301284    GT:AD:DP:GQ:PL    1/1:0,26:26:63.17:772,63,0
19    4491476    rs11878416    G    C    430.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301284    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:463,33,0
19    4493708    rs892161    A    G    33.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.77;SNPEFF_AMINO_ACID_CHANGE=P215;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4493700_4493859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398364    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
19    4496198    rs2288930    A    G    201.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301284    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
19    4498154    rs919798    G    A    153.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398364    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
19    4498157    rs919797    G    A    154.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398364    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:187,15,0
19    4498245    rs2288926    A    G    808.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398364    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:842,63,0
19    4499342    rs72138946    C    CA    91.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=13;HaplotypeScore=38.6531;IndelType=I;MQ=57.52;MQ0=0;QD=18.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398364    GT:AD:DP:GQ:PL    1/1:0,5:5:15:133,15,0
19    4501117    rs75785925    C    T    121.65    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=13;Dels=0.0;FS=2.48;HRun=0;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;MQRankSum=0.533;QD=9.36;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398364    GT:AD:DP:GQ:PL    0/1:8,5:13:99:152,0,169
19    4502282    rs13041    C    T    34.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011498.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301284    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
19    4504474    rs117659123    C    T    55.11    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.001;QD=5.51;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=Q1357;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4502204_4504797;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:7,3:10:85.10:85,0,163
19    4508945    rs8105775    A    G    508.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.27;SNPEFF_AMINO_ACID_CHANGE=P1165;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4508780_4508967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:542,42,0
19    4510388    rs56906779    AC    A    762.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=1;HaplotypeScore=293.9222;IndelType=D;MQ=51.2;MQ0=0;QD=24.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:24,7:31:87.82:804,88,0
19    4511281    rs7254934    G    A    2055.22    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=3.914;DB;DP=181;Dels=0.0;FS=0.596;HRun=0;HaplotypeScore=1.6517;MQ=48.59;MQ0=7;MQRankSum=-3.966;QD=11.35;ReadPosRankSum=-0.494;SNPEFF_AMINO_ACID_CHANGE=A883;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:79,102:181:99:2085,0,2074
19    4511350    rs7259721    T    A    2449.55    PASS    AB=0.347;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.362;DB;DP=144;Dels=0.0;FS=11.745;HRun=0;HaplotypeScore=2.6278;MQ=44.93;MQ0=4;MQRankSum=0.774;QD=17.01;ReadPosRankSum=3.031;SNPEFF_AMINO_ACID_CHANGE=K860N;SNPEFF_CODON_CHANGE=aaA/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:50,94:144:99:2480,0,1115
19    4511453    rs7255187    G    A    4612.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=53.18;MQ0=0;QD=33.18;SNPEFF_AMINO_ACID_CHANGE=A826V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4612,361,0
19    4511491    rs10423324    A    G    500.59    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=2.102;DB;DP=194;Dels=0.0;FS=4.445;HRun=0;HaplotypeScore=0.8321;MQ=52.03;MQ0=0;MQRankSum=-3.259;QD=2.58;ReadPosRankSum=-6.634;SNPEFF_AMINO_ACID_CHANGE=G813;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:142,52:194:99:531,0,4626
19    4511525    rs7256712    A    G    7503.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7752;MQ=47.49;MQ0=0;QD=30.26;SNPEFF_AMINO_ACID_CHANGE=M802T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:0,248:248:99:7504,641,0
19    4511575    rs62115185    C    G    938.84    SnpCluster    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.414;DB;DP=247;DS;Dels=0.0;FS=21.787;HRun=0;HaplotypeScore=4.4772;MQ=45.67;MQ0=0;MQRankSum=-3.681;QD=3.8;ReadPosRankSum=-0.011;SNPEFF_AMINO_ACID_CHANGE=V785;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:180,67:247:99:969,0,5119
19    4511578    rs62115186    A    G    713.51    SnpCluster    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.817;DB;DP=235;DS;Dels=0.0;FS=32.626;HRun=1;HaplotypeScore=4.4772;MQ=45.24;MQ0=0;MQRankSum=-4.039;QD=3.04;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=A784;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:179,56:235:99:744,0,5330
19    4511580    rs78884463    C    T    517.16    SnpCluster    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.999;DB;DP=236;DS;Dels=0.0;FS=27.788;HRun=0;HaplotypeScore=5.4755;MQ=45.1;MQ0=0;MQRankSum=-4.586;QD=2.19;ReadPosRankSum=0.47;SNPEFF_AMINO_ACID_CHANGE=A784T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:182,54:236:99:547,0,5411
19    4511581    rs75029810    A    G    579.50    SnpCluster    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.778;DB;DP=236;DS;Dels=0.0;FS=31.903;HRun=0;HaplotypeScore=5.4755;MQ=44.97;MQ0=0;MQRankSum=-4.719;QD=2.46;ReadPosRankSum=0.055;SNPEFF_AMINO_ACID_CHANGE=D783;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:183,53:236:99:609,0,5336
19    4511647    rs7256387    C    G    5601.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=183;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.58;MQ0=3;QD=30.61;SNPEFF_AMINO_ACID_CHANGE=K761N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:0,183:183:99:5601,448,0
19    4511725    rs73920825    T    C    2968.27    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.167;DB;DP=146;Dels=0.0;FS=2.777;HRun=5;HaplotypeScore=8.4364;MQ=34.63;MQ0=2;MQRankSum=-2.081;QD=20.33;ReadPosRankSum=1.817;SNPEFF_AMINO_ACID_CHANGE=Q735;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:3,142:146:99:3001,282,0
19    4511730    rs62115190    T    C    3799.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.701;MQ=37.29;MQ0=2;QD=21.22;SNPEFF_AMINO_ACID_CHANGE=I734V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:0,179:179:99:3799,346,0
19    4511737    rs57610751    T    C    446.81    HaplotypeScoreFilter13    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.35;DB;DP=207;Dels=0.0;FS=4.856;HRun=4;HaplotypeScore=36.1767;MQ=41.04;MQ0=2;MQRankSum=4.277;QD=2.16;ReadPosRankSum=-5.743;SNPEFF_AMINO_ACID_CHANGE=K731;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:146,61:207:99:477,0,3493
19    4511746    rs62115192    A    T    2622.48    HaplotypeScoreFilter13    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=4.952;DB;DP=225;Dels=0.0;FS=47.097;HRun=2;HaplotypeScore=38.7261;MQ=43.49;MQ0=2;MQRankSum=-0.714;QD=11.6;ReadPosRankSum=3.277;SNPEFF_AMINO_ACID_CHANGE=N728K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:110,114:225:99:2652,0,2474
19    4511791    rs62115193    A    C    3524.06    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.243;DB;DP=248;DS;Dels=0.0;FS=20.71;HRun=2;HaplotypeScore=11.1707;MQ=48.53;MQ0=1;MQRankSum=-3.067;QD=14.21;ReadPosRankSum=-0.53;SNPEFF_AMINO_ACID_CHANGE=T713;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:106,139:248:99:3524,0,2811
19    4511830    rs7257142    A    G    2943.02    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.864;DB;DP=249;DS;Dels=0.0;FS=12.395;HRun=1;HaplotypeScore=6.7416;MQ=51.17;MQ0=0;MQRankSum=-6.087;QD=11.82;ReadPosRankSum=1.198;SNPEFF_AMINO_ACID_CHANGE=T700;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:120,129:249:99:2973,0,3667
19    4511920    rs28460600    T    C    689.72    SnpCluster    AB=0.709;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.46;DB;DP=230;DS;Dels=0.0;FS=20.042;HRun=2;HaplotypeScore=3.6302;MQ=52.13;MQ0=0;MQRankSum=-9.992;QD=3.0;ReadPosRankSum=-2.736;SNPEFF_AMINO_ACID_CHANGE=T670;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:163,67:230:99:720,0,5332
19    4511927    rs10422025    G    A    197.11    QDFilter2;SnpCluster    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.504;DB;DP=217;DS;Dels=0.0;FS=4.008;HRun=0;HaplotypeScore=2.0641;MQ=53.02;MQ0=0;MQRankSum=-9.269;QD=0.91;ReadPosRankSum=-2.761;SNPEFF_AMINO_ACID_CHANGE=A668V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:163,53:217:99:227,0,5344
19    4511929    rs10424401    A    G    103.62    QDFilter2;SnpCluster    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.301;DB;DP=206;DS;Dels=0.0;FS=1.44;HRun=1;HaplotypeScore=1.6385;MQ=53.21;MQ0=0;MQRankSum=-9.951;QD=0.5;ReadPosRankSum=-2.568;SNPEFF_AMINO_ACID_CHANGE=A667;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:159,47:206:99:134,0,5195
19    4511955    rs7260518    T    C    5296.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.3122;MQ=56.62;MQ0=0;QD=29.59;SNPEFF_AMINO_ACID_CHANGE=S659G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:1,178:179:99:5296,430,0
19    4512324    .    C    T    2131.09    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=5.478;DP=165;Dels=0.0;FS=3.665;HRun=0;HaplotypeScore=6.5487;MQ=59.58;MQ0=0;MQRankSum=-1.125;QD=12.92;ReadPosRankSum=-0.756;SNPEFF_AMINO_ACID_CHANGE=V536I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:89,76:165:99:2161,0,2533
19    4512514    rs7259625    G    C    2457.82    PASS    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=4.172;DB;DP=168;Dels=0.0;FS=7.177;HRun=3;HaplotypeScore=2.3391;MQ=57.92;MQ0=1;MQRankSum=0.936;QD=14.63;ReadPosRankSum=1.213;SNPEFF_AMINO_ACID_CHANGE=G472;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:69,99:168:99:2488,0,1819
19    4512748    rs112063407    T    C    1914.57    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.343;DB;DP=121;Dels=0.0;FS=8.908;HRun=4;HaplotypeScore=2.8424;MQ=59.3;MQ0=0;MQRankSum=1.117;QD=15.82;ReadPosRankSum=0.261;SNPEFF_AMINO_ACID_CHANGE=T394;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:49,72:121:99:1945,0,1630
19    4513143    rs4807595    C    T    896.39    MQFilter40    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.384;DB;DP=144;Dels=0.0;FS=11.396;HRun=0;HaplotypeScore=1.9494;MQ=35.24;MQ0=31;MQRankSum=-0.201;QD=6.22;ReadPosRankSum=-0.243;SNPEFF_AMINO_ACID_CHANGE=G263S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:66,78:144:99:926,0,988
19    4513144    rs4807596    A    G    889.93    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=144;Dels=0.0;FS=11.292;HRun=1;HaplotypeScore=1.9494;MQ=35.58;MQ0=31;MQRankSum=-0.189;QD=6.18;ReadPosRankSum=0.423;SNPEFF_AMINO_ACID_CHANGE=T262;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    0/1:65,78:144:99:920,0,1018
19    4513559    rs4807597    A    G    1066.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_AMINO_ACID_CHANGE=V124A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4510458_4513716;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301286    GT:AD:DP:GQ:PL    1/1:0,33:33:84.24:1099,84,0
19    4525046    rs1610090    A    G    54.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.05;SNPEFF_AMINO_ACID_CHANGE=C255R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4524975_4525088;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381848    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
19    4538599    rs966384    G    A    327.67    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.005;DB;DP=40;Dels=0.0;FS=2.908;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;MQRankSum=0.044;QD=8.19;ReadPosRankSum=1.156;SNPEFF_AMINO_ACID_CHANGE=P133S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4537227_4538963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306390    GT:AD:DP:GQ:PL    0/1:26,14:40:99:358,0,873
19    4548015    rs4807602    G    A    71.91    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=8.99;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301292    GT:AD:DP:GQ:PL    0/1:3,5:8:89.34:102,0,89
19    4548245    rs10853972    C    A    521.32    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=0.596;QD=12.72;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301292    GT:AD:DP:GQ:PL    0/1:22,19:41:99:551,0,625
19    4550383    rs28667487    G    T    34.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=3.998;MQ=55.21;MQ0=0;QD=6.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301292    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:66,6,0
19    4550698    rs2043328    C    T    296.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301292    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:329,24,0
19    4551215    rs4635456    G    A    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=53.95;MQ0=0;QD=11.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301292    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:76,6,0
19    4557056    rs10422881    A    C    638.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEMA6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301292    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:671,51,0
19    4715016    rs12462642    G    A    87.22    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=54.65;MQ0=0;MQRankSum=0.937;QD=9.69;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262960    GT:AD:DP:GQ:PL    0/1:3,5:9:99:117,0,99
19    4770870    rs34288325    CT    C    164.30    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=16;FS=4.26;HRun=1;HaplotypeScore=36.7404;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=1.356;QD=10.27;ReadPosRankSum=-0.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR7-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384898    GT:AD:DP:GQ:PL    0/1:10,6:16:99:203,0,432
19    4772202    rs3760955    A    C    1227.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.4947;MQ=59.36;MQ0=0;QD=34.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR7-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384898    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1261,99,0
19    4772343    rs3760954    T    C    1209.08    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=105;Dels=0.0;FS=2.712;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=1.594;QD=11.52;ReadPosRankSum=-0.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR7-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384898    GT:AD:DP:GQ:PL    0/1:59,46:105:99:1239,0,1671
19    4816160    rs8120    A    C    487.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TICAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248244    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:521,39,0
19    4816719    rs2292151    G    A    990.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=D557;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4815939_4818528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TICAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248244    GT:AD:DP:GQ:PL    1/1:0,30:30:78.24:1023,78,0
19    4818378    rs7255265    T    C    625.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_AMINO_ACID_CHANGE=T4;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4815939_4818528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TICAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248244    GT:AD:DP:GQ:PL    1/1:0,23:23:54.14:658,54,0
19    4844665    rs66577278    TC    T    219.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;FS=0.0;HRun=4;HaplotypeScore=26.0364;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=21.9;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221957    GT:AD:DP:GQ:PL    0/1:2,8:10:53.99:258,0,54
19    4847713    rs9973235    A    G    322.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=V275A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4847703_4847902;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221957    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:356,27,0
19    4847868    rs10406652    G    A    334.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.15;SNPEFF_AMINO_ACID_CHANGE=V223;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4847703_4847902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221957    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:367,27,0
19    4847874    rs9304915    A    G    281.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=F221;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4847703_4847902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221957    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
19    4851896    rs35555865    T    C    133.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221957    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:166,12,0
19    4852106    rs2271058    A    G    896.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_AMINO_ACID_CHANGE=L186;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4852028_4852313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221957    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:930,69,0
19    4859937    rs8289    T    C    766.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.49;SNPEFF_AMINO_ACID_CHANGE=I56V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4859838_4860036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221957    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:799,63,0
19    4890914    rs2656938    A    G    73.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.49;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381781    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
19    4896948    rs113095826    C    CT    703.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.176;DB;DP=33;FS=0.0;HRun=11;HaplotypeScore=110.7542;IndelType=I;MQ=58.55;MQ0=0;MQRankSum=-0.602;QD=21.33;ReadPosRankSum=0.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381781    GT:AD:DP:GQ:PL    1/1:7,24:33:67.46:746,67,0
19    4902754    rs2779168    G    A    4615.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;DB;DP=142;Dels=0.01;FS=3.871;HRun=2;HaplotypeScore=4.5016;MQ=59.52;MQ0=0;MQRankSum=-1.383;QD=32.28;ReadPosRankSum=0.062;SNPEFF_AMINO_ACID_CHANGE=I42;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4902585_4902879;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381781    GT:AD:DP:GQ:PL    1/1:1,141:142:99:4616,316,0
19    4929124    rs59999618    GC    G    107.28    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=16;FS=3.802;HRun=10;HaplotypeScore=42.8728;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=6.71;ReadPosRankSum=0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:9,7:16:99:146,0,130
19    4929413    rs2251520    T    C    377.83    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=0.378;DB;DP=45;Dels=0.0;FS=7.368;HRun=0;HaplotypeScore=0.8321;MQ=55.76;MQ0=0;MQRankSum=0.755;QD=8.4;ReadPosRankSum=-1.322;SNPEFF_AMINO_ACID_CHANGE=G111;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4929234_4929488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:19,22:45:99:408,0,467
19    4929473    rs2123731    A    G    509.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.602;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.55;MQ0=0;MQRankSum=-0.851;QD=10.61;ReadPosRankSum=-0.307;SNPEFF_AMINO_ACID_CHANGE=E131;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4929234_4929488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:24,24:48:99:539,0,636
19    4930647    rs17881117    C    T    274.55    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=16;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=17.16;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:6,10:16:99:305,0,208
19    4941375    rs2656916    G    A    193.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.524;QD=13.81;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:7,7:14:99:223,0,199
19    4941456    rs2251519    C    T    915.62    PASS    AB=0.365;AC=1;AF=0.50;AN=2;BaseQRankSum=0.057;DB;DP=52;Dels=0.0;FS=1.584;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.855;QD=17.61;ReadPosRankSum=-0.399;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:19,33:52:99:946,0,637
19    4944555    rs2602730    G    A    155.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
19    4945914    rs2250982    A    C    546.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.05;MQ0=0;QD=24.82;SNPEFF_AMINO_ACID_CHANGE=I449;SNPEFF_CODON_CHANGE=atA/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4945873_4945977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    1/1:0,22:22:45.13:579,45,0
19    4945917    rs2250981    C    T    156.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.232;DB;DP=22;Dels=0.0;FS=1.848;HRun=0;HaplotypeScore=0.0;MQ=53.05;MQ0=0;MQRankSum=-1.303;QD=7.13;ReadPosRankSum=0.246;SNPEFF_AMINO_ACID_CHANGE=H450;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4945873_4945977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:12,10:22:99:187,0,322
19    4945974    rs2250978    T    C    387.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.14;MQ0=0;QD=22.8;SNPEFF_AMINO_ACID_CHANGE=D469;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4945873_4945977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    1/1:0,16:17:36.10:421,36,0
19    4947041    rs2602734    A    G    2663.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.01;FS=0.0;HRun=4;HaplotypeScore=5.3633;MQ=56.88;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2696,220,0
19    4947056    rs12974635    C    T    1647.63    HaplotypeScoreFilter13    AB=0.411;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.471;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.5587;MQ=57.21;MQ0=0;MQRankSum=-1.296;QD=15.4;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:44,63:107:99:1678,0,1235
19    4947426    rs2602735    G    A    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=13.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
19    4954310    rs2307204    A    G    147.07    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=53.76;MQ0=0;MQRankSum=0.978;QD=6.69;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:14,8:22:99:177,0,394
19    4954455    rs17883331    G    A    373.21    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.196;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.29;MQ0=2;MQRankSum=1.287;QD=12.04;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=A253T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_4954362_4954500;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396708    GT:AD:DP:GQ:PL    0/1:15,16:31:99:403,0,394
19    4954679    rs78623648    G    GC    621.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=62.3788;IndelType=I;MQ=44.75;MQ0=0;QD=28.25;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_4954662_4954687;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    1/1:3,19:19:45.15:663,45,0
19    4960948    rs146145010    CT    C    67.07    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;FS=0.0;HRun=11;HaplotypeScore=23.7693;IndelType=D;MQ=28.7;MQ0=8;MQRankSum=-0.572;QD=4.19;ReadPosRankSum=0.572;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UHRF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262952    GT:AD:DP:GQ:PL    0/1:10,5:8:40.97:106,0,41
19    5041178    rs2240678    T    C    1366.14    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=101;Dels=0.0;FS=7.789;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=-0.856;QD=13.53;ReadPosRankSum=-0.581;SNPEFF_AMINO_ACID_CHANGE=D116;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5041148_5041262;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000159111    GT:AD:DP:GQ:PL    0/1:57,44:101:99:1396,0,1651
19    5047691    rs2620818    G    A    554.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.941;DB;DP=40;Dels=0.0;FS=1.512;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.874;QD=13.86;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159111    GT:AD:DP:GQ:PL    0/1:20,20:40:99:584,0,513
19    5077336    rs2291149    G    A    977.69    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=4.901;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.63;MQ0=0;MQRankSum=-1.175;QD=15.52;ReadPosRankSum=1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159111    GT:AD:DP:GQ:PL    0/1:33,30:63:99:1008,0,821
19    5111994    rs2613736    A    G    376.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381759    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
19    5135392    rs2620836    A    G    1280    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=K710E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5135350_5135572;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000159111    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1313,99,0
19    5138229    rs2251127    T    C    119.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159111    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
19    5206775    rs1143700    A    G    969.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=1.6006;MQ=59.38;MQ0=0;QD=26.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536396    GT:AD:DP:GQ:PL    1/1:0,37:37:78.25:1002,78,0
19    5211568    rs55858361    G    A    202.38    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.78;DB;DP=19;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=10.65;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    0/1:10,9:19:99:232,0,330
19    5212380    rs1064300    C    T    31.94    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=3.55;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=P1132;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5212348_5212502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353284    GT:AD:DP:GQ:PL    0/1:7,2:9:61.93:62,0,154
19    5214533    rs9304921    A    G    325.58    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.528;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.604;QD=14.8;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    0/1:9,13:22:99:356,0,282
19    5214697    rs4807697    A    G    539.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_AMINO_ACID_CHANGE=C1010R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5214572_5214747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353284    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:572,45,0
19    5219803    rs12975955    T    C    199.75    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.423;QD=12.48;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    0/1:9,7:16:99:230,0,294
19    5219829    rs34082224    T    G    269.82    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.556;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=0.458;QD=12.85;ReadPosRankSum=-1.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    0/1:10,11:21:99:300,0,349
19    5220900    rs10412973    T    C    382.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:416,33,0
19    5222071    rs3746132    G    C    969.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1003,78,0
19    5245630    rs62115089    A    G    38.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.69;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    0/1:2,2:4:68.77:69,0,71
19    5251089    rs118134677    G    C    50.10    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=7.068;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=6.26;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    0/1:5,3:8:80.09:80,0,150
19    5260878    rs36016542    T    C    334.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.5981;MQ=60.24;MQ0=0;QD=25.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:368,33,0
19    5260879    rs10708972    GT    G    406.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=77.9344;IndelType=D;MQ=60.24;MQ0=0;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    1/1:1,12:13:36.10:448,36,0
19    5260933    rs7246162    A    T    132.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
19    5263061    rs55840918    G    T    154.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:188,15,0
19    5264967    rs4807017    A    G    324.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=29.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262963    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:358,30,0
19    5273571    rs1141371    T    G    241.88    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.647;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9667;MQ=59.14;MQ0=0;MQRankSum=0.97;QD=8.96;ReadPosRankSum=1.886;SNPEFF_AMINO_ACID_CHANGE=A113;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5273453_5273594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536396    GT:AD:DP:GQ:PL    0/1:17,10:27:99:272,0,445
19    5576944    rs4807784    C    T    665.50    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=3.279;DB;DP=61;Dels=0.02;FS=1.363;HRun=0;HaplotypeScore=5.759;MQ=57.32;MQ0=0;MQRankSum=2.975;QD=10.73;ReadPosRankSum=0.241;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=AC011533.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435815    GT:AD:DP:GQ:PL    0/1:32,29:61:99:695,0,708
19    5591735    rs2285963    G    A    55.43    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.312;DB;DP=13;Dels=0.0;FS=6.929;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=4.26;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252542    GT:AD:DP:GQ:PL    0/1:9,4:13:85.43:85,0,335
19    5595354    rs10413286    T    C    591.44    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DB;DP=38;Dels=0.0;FS=3.154;HRun=2;HaplotypeScore=1.8666;MQ=58.78;MQ0=0;MQRankSum=1.079;QD=15.56;ReadPosRankSum=0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252542    GT:AD:DP:GQ:PL    0/1:16,22:38:99:621,0,460
19    5684775    rs35832694    G    A    162.21    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.312;QD=12.48;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD11B1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301382    GT:AD:DP:GQ:PL    0/1:7,6:13:99:192,0,204
19    5696245    rs4073993    A    G    419.29    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.052;QD=15.53;ReadPosRankSum=0.623;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347512    GT:AD:DP:GQ:PL    0/1:11,16:27:99:449,0,317
19    5705617    rs2485259    T    C    32.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.0;QD=8.18;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358403    GT:AD:DP:GQ:PL    0/1:2,2:4:60.71:63,0,61
19    5707204    rs945828    T    C    134.71    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=2.054;QD=14.97;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358403    GT:AD:DP:GQ:PL    0/1:3,6:9:92.31:165,0,92
19    5711775    rs79747498    G    A    769.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.9;DB;DP=42;Dels=0.0;FS=3.002;HRun=1;HaplotypeScore=4.7465;MQ=58.89;MQ0=0;MQRankSum=0.949;QD=18.33;ReadPosRankSum=1.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LONP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358403    GT:AD:DP:GQ:PL    0/1:14,28:42:99:800,0,399
19    5727414    rs5826899    C    CT    380.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.213;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=40.0632;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=19.03;ReadPosRankSum=-0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381614    GT:AD:DP:GQ:PL    0/1:10,10:20:99:420,0,360
19    5734239    rs2436535    T    C    125.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381614    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
19    5746121    rs77656808    C    CA    1414.17    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.486;DB;DP=69;FS=4.317;HRun=1;HaplotypeScore=202.1088;IndelType=I;MQ=60.14;MQ0=0;MQRankSum=-0.561;QD=20.5;ReadPosRankSum=-1.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381614    GT:AD:DP:GQ:PL    0/1:32,37:69:99:1453,0,961
19    5749070    rs58136456    C    T    270.44    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.909;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=18.03;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381614    GT:AD:DP:GQ:PL    0/1:4,11:15:99:300,0,120
19    5759231    rs11879365    T    G    839.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309164    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:873,66,0
19    5766090    rs2446200    T    C    665.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309164    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:698,51,0
19    5768331    rs10680062    T    TTTTA    404.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=77.7668;IndelType=I;MQ=62.29;MQ0=0;QD=22.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309164    GT:AD:DP:GQ:PL    1/1:10,7:18:21.07:447,21,0
19    5768395    rs2485272    T    C    107.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.13;MQ0=0;QD=21.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309164    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:140,12,0
19    5772950    rs61180947    G    A    707.23    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.896;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6226;MQ=60.0;MQ0=0;MQRankSum=-1.557;QD=13.87;ReadPosRankSum=1.217;SNPEFF_AMINO_ACID_CHANGE=G308R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5772799_5772976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381613    GT:AD:DP:GQ:PL    0/1:24,27:51:99:737,0,726
19    5773188    rs4377262    G    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM146;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309164    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    5787215    rs28427521    G    A    83.72    HaplotypeScoreFilter13    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=24.2231;MQ=40.83;MQ0=0;MQRankSum=1.788;QD=5.98;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUS3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309061    GT:AD:DP:GQ:PL    0/1:6,7:14:18.40:114,0,18
19    5843576    rs34304528    C    T    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.86;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286955    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,114
19    5843609    rs874232    T    C    344.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=31.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286955    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:378,30,0
19    5844537    rs778986    A    G    1181.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.01;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=M105T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5842900_5844862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303225    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1214,93,0
19    5844649    rs812936    G    A    636    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_AMINO_ACID_CHANGE=R68W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5842900_5844862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303225    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:669,51,0
19    5866585    rs778982    C    T    1670.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=55.77;MQ0=0;QD=30.94;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252675    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1704,135,0
19    5866654    rs778983    A    G    1282.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6548;MQ=48.36;MQ0=0;QD=32.05;SNPEFF_AMINO_ACID_CHANGE=S361;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5866182_5867748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252675    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1315,102,0
19    5866736    rs57100281    T    C    452.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=32.65;MQ0=2;QD=22.61;SNPEFF_AMINO_ACID_CHANGE=H334R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5866182_5867748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252675    GT:AD:DP:GQ:PL    1/1:0,19:20:45.10:485,45,0
19    5866816    rs28541500    G    A    193.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.06;MQ0=17;QD=5.09;SNPEFF_AMINO_ACID_CHANGE=D307;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5866182_5867748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252675    GT:AD:DP:GQ:PL    1/1:9,29:38:21.05:226,21,0
19    5866840    rs702065    T    C    145.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.74;MQ0=18;QD=3.56;SNPEFF_AMINO_ACID_CHANGE=P299;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5866182_5867748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252675    GT:AD:DP:GQ:PL    1/1:11,29:40:18.02:179,18,0
19    5867177    rs778970    G    A    342.59    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.349;DB;DP=38;Dels=0.0;FS=5.988;HRun=0;HaplotypeScore=0.0;MQ=40.54;MQ0=5;MQRankSum=0.229;QD=9.02;ReadPosRankSum=-0.229;SNPEFF_AMINO_ACID_CHANGE=P187L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5866182_5867748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252675    GT:AD:DP:GQ:PL    0/1:21,17:38:99:373,0,322
19    5867748    rs778971    G    T    295.62    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.154;DB;DP=25;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=1.445;MQ=57.36;MQ0=0;MQRankSum=0.34;QD=11.82;ReadPosRankSum=1.398;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_5866182_5867748;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252675    GT:AD:DP:GQ:PL    0/1:12,13:25:99:326,0,354
19    5892770    rs1631032    C    T    73.13    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.28;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308961    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:103,0,25
19    5893058    rs12980262    G    A    207.64    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.285;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=14.83;ReadPosRankSum=0.225;SNPEFF_AMINO_ACID_CHANGE=A186V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5892928_5893301;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000418389    GT:AD:DP:GQ:PL    0/1:6,8:14:99:238,0,211
19    5896766    rs702064    C    T    142.41    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=17.8;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252675    GT:AD:DP:GQ:PL    0/1:3,5:8:99:172,0,102
19    5915151    rs74174355    C    T    388.91    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.472;DB;DP=25;Dels=0.0;FS=3.666;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.26;QD=15.56;ReadPosRankSum=-1.472;SNPEFF_AMINO_ACID_CHANGE=D154;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_5914951_5915157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222125    GT:AD:DP:GQ:PL    0/1:13,12:25:99:419,0,339
19    5921352    rs274795    G    A    461.92    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.345;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.395;QD=12.48;ReadPosRankSum=-0.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000034275    GT:AD:DP:GQ:PL    0/1:19,18:37:99:492,0,513
19    5927857    rs55879542    C    G    161.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=11.55;ReadPosRankSum=-2.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000034275    GT:AD:DP:GQ:PL    0/1:7,7:14:99:192,0,255
19    5928185    rs274793    T    C    470.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000034275    GT:AD:DP:GQ:PL    1/1:0,18:18:42.12:503,42,0
19    5994823    rs71942694    CGAG    C    482.97    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.923;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=103.5126;IndelType=D;MQ=58.46;MQ0=0;MQRankSum=-0.89;QD=20.12;ReadPosRankSum=-0.033;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303657    GT:AD:DP:GQ:PL    0/1:12,12:24:99:522,0,604
19    6002917    rs28421560    A    G    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303657    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
19    6004105    rs530942    G    A    542.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303657    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:575,42,0
19    6140952    rs11880614    G    A    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252669    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    6141471    rs10853992    C    A    2355.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252669    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2389,181,0
19    6141758    rs9304926    G    T    719.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252669    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:752,63,0
19    6141809    rs9304927    G    A    447.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252669    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:480,36,0
19    6147611    .    T    A    2372.05    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=4.375;DP=180;Dels=0.0;FS=0.548;HRun=2;HaplotypeScore=5.0292;MQ=59.59;MQ0=0;MQRankSum=-0.81;QD=13.18;ReadPosRankSum=2.192;SNPEFF_AMINO_ACID_CHANGE=N74K;SNPEFF_CODON_CHANGE=aaT/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6147457_6147686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252669    GT:AD:DP:GQ:PL    0/1:98,82:180:99:2402,0,2852
19    6147743    rs9304929    G    C    1725.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252669    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1758,132,0
19    6151703    rs7252466    C    T    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252669    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
19    6156483    rs4807840    T    C    3537.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5712;MQ=59.54;MQ0=0;QD=35.37;SNPEFF_AMINO_ACID_CHANGE=V143A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6156442_6156562;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACSBG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252669    GT:AD:DP:GQ:PL    1/1:0,99:100:99:3537,271,0
19    6213734    rs2233196    C    G    209.34    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.373;DB;DP=36;Dels=0.0;FS=3.267;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=5.81;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252674    GT:AD:DP:GQ:PL    0/1:22,14:36:99:239,0,723
19    6222552    rs139655596    C    T    117.27    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.66;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=S230;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6222132_6222695;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252674    GT:AD:DP:GQ:PL    0/1:3,5:8:54.09:147,0,54
19    6227229    rs112734701    C    T    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.99;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252674    GT:AD:DP:GQ:PL    0/1:3,3:6:71.96:72,0,91
19    6230771    rs2233185    T    G    726.80    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=2.634;DB;DP=58;Dels=0.0;FS=7.1;HRun=2;HaplotypeScore=2.7649;MQ=58.88;MQ0=0;MQRankSum=0.701;QD=12.53;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252674    GT:AD:DP:GQ:PL    0/1:31,27:58:99:757,0,965
19    6262355    rs2227261    C    T    474.68    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=2.536;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=13.56;ReadPosRankSum=-0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252674    GT:AD:DP:GQ:PL    0/1:19,16:35:99:505,0,488
19    6262536    rs1865062    G    A    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLLT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252674    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
19    6306971    rs4807863    G    A    135.82    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.495;QD=16.98;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301452    GT:AD:DP:GQ:PL    0/1:3,5:8:61.59:166,0,62
19    6361845    rs113825174    G    GC    163.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=33.0372;IndelType=I;MQ=53.95;MQ0=0;QD=20.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245816    GT:AD:DP:GQ:PL    1/1:2,6:8:15.05:205,15,0
19    6366149    rs2860168    C    T    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245816    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
19    6366230    rs10420388    A    G    121.62    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=20.27;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245816    GT:AD:DP:GQ:PL    0/1:1,5:6:24.96:152,0,25
19    6368386    rs7251613    T    C    74.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.55;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245816    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:104,0,30
19    6374813    rs10421175    T    C    657.24    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.921;DB;DP=45;Dels=0.0;FS=1.174;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-2.992;QD=14.61;ReadPosRankSum=0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTF2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394456    GT:AD:DP:GQ:PL    0/1:21,24:45:99:687,0,710
19    6375831    rs2304198    G    A    204.70    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.087;DB;DP=18;Dels=0.0;FS=4.359;HRun=0;HaplotypeScore=0.9992;MQ=58.96;MQ0=0;MQRankSum=-1.54;QD=11.37;ReadPosRankSum=0.453;SNPEFF_AMINO_ACID_CHANGE=S10;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6375713_6375860;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSPN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245810    GT:AD:DP:GQ:PL    0/1:11,7:18:99:235,0,297
19    6378485    rs140870295    C    A    344.43    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=2.937;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.53;MQ0=0;MQRankSum=0.444;QD=7.03;ReadPosRankSum=-0.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALKBH7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245812    GT:AD:DP:GQ:PL    0/1:29,20:49:99:374,0,855
19    6415443    rs1616305    T    C    188.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=23.55;SNPEFF_AMINO_ACID_CHANGE=A638;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6415391_6415468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHSRP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000201886    GT:AD:DP:GQ:PL    1/1:0,7:8:18.05:221,18,0
19    6415795    rs8103311    T    C    79.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHSRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201886    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
19    6417855    rs2258496    G    A    293.15    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.905;QD=9.77;ReadPosRankSum=-0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHSRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201886    GT:AD:DP:GQ:PL    0/1:17,13:30:99:323,0,535
19    6419275    rs2305059    A    G    58.49    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=9.622;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=5.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHSRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201886    GT:AD:DP:GQ:PL    0/1:7,4:11:88.48:88,0,256
19    6426271    rs66673060    CCAGCCT    C    420.92    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.047;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=123.9795;IndelType=D;MQ=56.03;MQ0=0;MQRankSum=-0.964;QD=21.05;ReadPosRankSum=0.424;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KHSRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201886    GT:AD:DP:GQ:PL    0/1:12,8:20:99:460,0,1108
19    6433371    rs9304938    A    G    463.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264088    GT:AD:DP:GQ:PL    1/1:0,15:15:45.09:496,45,0
19    6452305    rs173229    A    G    58.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=6.52;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264088    GT:AD:DP:GQ:PL    0/1:6,3:9:88.68:89,0,179
19    6455890    rs4807870    T    C    73.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.19;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264088    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,106
19    6456218    rs348367    C    T    171.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.53;QD=11.47;ReadPosRankSum=1.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264088    GT:AD:DP:GQ:PL    0/1:9,6:15:99:202,0,255
19    6457367    rs348370    T    C    158.26    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.38;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264088    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:188,0,22
19    6457723    rs4807871    C    T    104.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=13.06;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264088    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,140
19    6466482    rs348362    A    G    1473.89    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.945;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.4415;MQ=58.9;MQ0=0;MQRankSum=1.153;QD=11.61;ReadPosRankSum=-0.343;SNPEFF_AMINO_ACID_CHANGE=P54;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6466477_6466683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308243    GT:AD:DP:GQ:PL    0/1:65,60:127:99:1504,0,2013
19    6468331    rs62107586    T    C    484.84    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.96;DB;DP=42;Dels=0.0;FS=1.222;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.43;QD=11.54;ReadPosRankSum=0.505;SNPEFF_AMINO_ACID_CHANGE=M525V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6468245_6468452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543576    GT:AD:DP:GQ:PL    0/1:23,19:42:99:515,0,706
19    6469042    rs112143621    CT    C    47.53    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=13;FS=2.808;HRun=13;HaplotypeScore=64.5091;IndelType=D;MQ=58.2;MQ0=0;MQRankSum=0.573;QD=3.66;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308243    GT:AD:DP:GQ:PL    0/1:8,5:13:59.62:87,0,60
19    6471567    rs8105247    G    A    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.026;QD=8.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308243    GT:AD:DP:GQ:PL    0/1:2,2:5:66.17:70,0,66
19    6475163    rs12976944    A    C    367.28    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.519;QD=18.36;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381480    GT:AD:DP:GQ:PL    0/1:9,11:20:99:397,0,274
19    6475613    rs3745571    T    C    702.70    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=2.607;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-2.21;QD=17.14;ReadPosRankSum=1.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381480    GT:AD:DP:GQ:PL    0/1:17,24:41:99:733,0,444
19    6476763    rs4807872    G    A    101.77    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.18;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381480    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,163
19    6477256    rs348398    G    T    257.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.041;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=17.17;ReadPosRankSum=0.184;SNPEFF_AMINO_ACID_CHANGE=P118;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6477229_6477294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543576    GT:AD:DP:GQ:PL    0/1:5,10:15:99:288,0,148
19    6477324    rs348399    G    C    207.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.81;QD=10.36;ReadPosRankSum=-0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DENND1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381480    GT:AD:DP:GQ:PL    0/1:12,8:20:99:237,0,350
19    6495064    rs446199    C    G    153.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.62;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264071    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:186,15,0
19    6495736    rs2071347    A    G    1556.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.903;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=5.5528;MQ=58.87;MQ0=0;MQRankSum=0.181;QD=31.77;ReadPosRankSum=1.625;SNPEFF_AMINO_ACID_CHANGE=V176;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6494767_6495861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412858    GT:AD:DP:GQ:PL    1/1:2,47:49:94.17:1590,94,0
19    6535080    rs2234182    T    C    73.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.55;ReadPosRankSum=-0.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245817    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,106
19    6585921    rs453462    G    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423145    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    6591146    rs17703895    C    A    73.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.68;ReadPosRankSum=-0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423145    GT:AD:DP:GQ:PL    0/1:2,3:5:62.84:103,0,63
19    6665020    rs344560    T    C    3538.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8656;MQ=59.78;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=K178E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6663148_6665361;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326176    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3538,274,0
19    6665387    rs142044586    G    T    33.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245912    GT:AD:DP:GQ:PL    0/1:2,2:4:60.23:64,0,60
19    6665481    rs8101047    A    G    40.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245912    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
19    6669934    rs2291668    G    A    1136.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.383;DB;DP=70;Dels=0.0;FS=5.721;HRun=0;HaplotypeScore=0.7887;MQ=57.31;MQ0=0;MQRankSum=0.966;QD=16.24;ReadPosRankSum=0.181;SNPEFF_AMINO_ACID_CHANGE=A49;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6669862_6670169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNFSF14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245912    GT:AD:DP:GQ:PL    0/1:30,40:70:99:1167,0,707
19    6677989    rs17030    G    A    414.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.187;DB;DP=35;Dels=0.0;FS=6.1;HRun=0;HaplotypeScore=1.8533;MQ=59.34;MQ0=0;MQRankSum=0.017;QD=11.83;ReadPosRankSum=0.857;SNPEFF_AMINO_ACID_CHANGE=P1632;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6677846_6678034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    0/1:21,14:35:99:444,0,547
19    6679360    rs344555    T    C    2706.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=34.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488661    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2740,205,0
19    6679511    rs2277984    C    T    1459.85    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=4.219;DB;DP=80;Dels=0.0;FS=4.077;HRun=0;HaplotypeScore=2.6559;MQ=58.78;MQ0=0;MQRankSum=0.126;QD=18.25;ReadPosRankSum=-0.136;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488661    GT:AD:DP:GQ:PL    0/1:35,45:80:99:1490,0,990
19    6679563    rs2277983    T    C    582.78    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.058;DB;DP=38;Dels=0.0;FS=3.921;HRun=0;HaplotypeScore=0.8667;MQ=58.16;MQ0=0;MQRankSum=0.727;QD=15.34;ReadPosRankSum=-1.005;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488661    GT:AD:DP:GQ:PL    0/1:15,23:38:99:613,0,498
19    6679578    rs11569560    G    A    359.63    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.339;DB;DP=30;Dels=0.0;FS=3.485;HRun=1;HaplotypeScore=1.6006;MQ=57.66;MQ0=0;MQRankSum=0.126;QD=11.99;ReadPosRankSum=0.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463520    GT:AD:DP:GQ:PL    0/1:17,13:30:99:390,0,568
19    6681991    rs7951    G    A    715.28    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.039;DB;DP=50;Dels=0.0;FS=6.219;HRun=2;HaplotypeScore=0.9789;MQ=59.54;MQ0=0;MQRankSum=0.561;QD=14.31;ReadPosRankSum=-0.686;SNPEFF_AMINO_ACID_CHANGE=A1437;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6681952_6682041;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    0/1:21,28:50:99:745,0,698
19    6684197    rs1389623    G    A    71.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=8.96;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463520    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,173
19    6685304    rs2241393    G    C    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475508    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    6685817    rs344548    G    C    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475508    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
19    6685945    rs7257062    C    T    126.79    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=18.11;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475508    GT:AD:DP:GQ:PL    0/1:2,5:7:61.35:157,0,61
19    6685983    rs2241392    G    C    260.30    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=20.02;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475508    GT:AD:DP:GQ:PL    0/1:5,8:13:99:290,0,163
19    6686659    rs237554    T    C    4005.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5952;MQ=59.61;MQ0=0;QD=37.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    1/1:0,106:106:99:4006,298,0
19    6696342    rs2287848    A    G    30.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=10.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479609    GT:AD:DP:GQ:PL    1/1:0,2:3:6.01:62,6,0
19    6696496    rs2287847    T    C    1426.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.84;MQ0=0;MQRankSum=-0.578;QD=36.58;ReadPosRankSum=-0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479609    GT:AD:DP:GQ:PL    1/1:1,38:39:99:1460,114,0
19    6696557    rs2287846    C    G    2096.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8084;MQ=58.47;MQ0=0;QD=27.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479609    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2130,183,0
19    6696597    rs2287845    G    A    3653.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4021;MQ=58.39;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479609    GT:AD:DP:GQ:PL    1/1:0,112:113:99:3653,271,0
19    6696691    rs2355315    G    T    2384.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479609    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2418,193,0
19    6696699    rs2253756    G    A    2584.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=37.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479609    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2618,193,0
19    6696789    rs2355316    G    A    479.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479609    GT:AD:DP:GQ:PL    1/1:0,13:14:39.13:513,39,0
19    6696835    rs408004    G    A    109.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8888;MQ=49.96;MQ0=0;QD=21.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479609    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:142,12,0
19    6697406    rs423490    A    G    525.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=26.26;SNPEFF_AMINO_ACID_CHANGE=A915;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6697355_6697567;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    1/1:0,20:20:45.10:558,45,0
19    6697829    rs366510    G    T    247.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:281,21,0
19    6702022    rs408290    G    C    142.80    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=20.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    0/1:1,6:7:23.18:173,0,23
19    6702042    rs433594    A    G    220.54    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.751;QD=24.5;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    0/1:1,8:9:10.74:250,0,11
19    6702157    rs428453    C    G    1458.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DB;DP=48;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=1.155;QD=30.38;ReadPosRankSum=1.011;SNPEFF_AMINO_ACID_CHANGE=V807;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6702138_6702223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    1/1:1,47:48:71.37:1491,71,0
19    6702246    rs432823    T    C    869.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:902,66,0
19    6702598    rs406514    G    A    1572.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1605,123,0
19    6709848    rs2230204    C    T    528.54    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.819;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.868;QD=12.01;ReadPosRankSum=1.382;SNPEFF_AMINO_ACID_CHANGE=V564;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6709695_6709853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245907    GT:AD:DP:GQ:PL    0/1:24,20:44:99:559,0,760
19    6710572    rs189367    G    A    118.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.53;MQ0=0;QD=16.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461512    GT:AD:DP:GQ:PL    1/1:0,7:7:12.03:151,12,0
19    6714273    rs3745558    G    A    673.56    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.76;DB;DP=45;Dels=0.0;FS=4.246;HRun=0;HaplotypeScore=0.9894;MQ=59.49;MQ0=0;MQRankSum=-0.125;QD=14.97;ReadPosRankSum=-1.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461598    GT:AD:DP:GQ:PL    0/1:22,23:45:99:704,0,679
19    6717934    rs2642196    T    C    364.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461598    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
19    6731057    rs2279624    T    C    836.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_AMINO_ACID_CHANGE=G134;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6730998_6731122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000550472    GT:AD:DP:GQ:PL    1/1:0,30:30:69.20:869,69,0
19    6731304    rs2279626    G    A    435.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.349;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.964;QD=22.91;ReadPosRankSum=-0.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548307    GT:AD:DP:GQ:PL    1/1:1,18:19:0.35:464,0,0
19    6731766    rs1702375    C    A    270.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548307    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:304,24,0
19    6732018    rs2291666    C    T    658.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548307    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:692,51,0
19    6732615    rs2047139    T    C    315.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548307    GT:AD:DP:GQ:PL    1/1:0,11:11:30.05:349,30,0
19    6733517    rs339395    A    G    561.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=29.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548307    GT:AD:DP:GQ:PL    1/1:0,19:19:54.09:595,54,0
19    6734131    rs339397    C    G    1380.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6624;MQ=59.42;MQ0=0;QD=34.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548307    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1414,108,0
19    6735340    rs163916    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548307    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    6735348    rs339399    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548307    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    6737481    rs340138    T    C    173.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=24.85;SNPEFF_AMINO_ACID_CHANGE=Q36R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6737468_6737614;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264080    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:207,18,0
19    6737509    rs339401    G    A    183.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=26.2;SNPEFF_AMINO_ACID_CHANGE=L27;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6737468_6737614;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264080    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:216,18,0
19    6737516    rs11539591    C    T    91.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=15.21;SNPEFF_AMINO_ACID_CHANGE=V24;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6737468_6737614;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GPR108;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264080    GT:AD:DP:GQ:PL    1/1:0,6:6:12.01:124,12,0
19    6739710    rs2303109    G    T    241.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=30.24;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_6739691_6739796;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313285    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:275,24,0
19    6742864    rs339408    G    A    947.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=59.14;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313244    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:980,78,0
19    6743399    rs381897    A    T    409.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313244    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:443,33,0
19    6743626    rs145584075    CG    C    286.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DB;DP=21;FS=3.59;HRun=10;HaplotypeScore=149.2026;IndelType=D;MQ=61.47;MQ0=0;MQRankSum=1.085;QD=13.64;ReadPosRankSum=0.868;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465190    GT:AD:DP:GQ:PL    1/1:10,10:21:41.59:329,42,0
19    6744762    rs339405    A    C    648.44    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.677;DB;DP=35;Dels=0.0;FS=13.359;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.094;QD=18.53;ReadPosRankSum=-0.993;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465190    GT:AD:DP:GQ:PL    0/1:14,21:35:99:678,0,394
19    6749684    rs62125120    C    T    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.65;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245908    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:69,0,68
19    6750204    rs339402    C    T    356.65    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.609;DB;DP=34;Dels=0.0;FS=8.034;HRun=0;HaplotypeScore=0.9578;MQ=59.32;MQ0=0;MQRankSum=-0.153;QD=10.49;ReadPosRankSum=2.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245908    GT:AD:DP:GQ:PL    0/1:19,13:34:99:387,0,676
19    6754188    rs2305807    T    C    49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=12;Dels=0.0;FS=5.643;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.382;QD=4.08;ReadPosRankSum=1.106;SNPEFF_AMINO_ACID_CHANGE=D327G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6754063_6754436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437152    GT:AD:DP:GQ:PL    0/1:8,4:12:78.99:79,0,292
19    6754774    rs168129    C    A    2174.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313244    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2207,163,0
19    6755007    rs2305806    T    C    1791.68    PASS    AB=0.445;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.706;DB;DP=119;Dels=0.0;FS=6.055;HRun=0;HaplotypeScore=4.2823;MQ=59.22;MQ0=0;MQRankSum=1.109;QD=15.06;ReadPosRankSum=-0.649;SNPEFF_AMINO_ACID_CHANGE=T150;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6754842_6755326;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000437152    GT:AD:DP:GQ:PL    0/1:53,66:119:99:1822,0,1643
19    6755155    rs12608960    T    C    1293.42    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.946;DB;DP=87;Dels=0.0;FS=2.979;HRun=1;HaplotypeScore=3.4129;MQ=59.2;MQ0=0;MQRankSum=0.877;QD=14.87;ReadPosRankSum=0.704;SNPEFF_AMINO_ACID_CHANGE=D101G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6754842_6755326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437152    GT:AD:DP:GQ:PL    0/1:42,45:87:99:1323,0,1333
19    6760974    rs7258236    T    C    127.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=14.2;ReadPosRankSum=0.729;SNPEFF_AMINO_ACID_CHANGE=N32D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6760649_6760998;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245908    GT:AD:DP:GQ:PL    0/1:4,5:9:99:158,0,136
19    6761011    rs7246122    T    G    73.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.231;QD=12.27;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245908    GT:AD:DP:GQ:PL    0/1:2,4:6:57.31:104,0,57
19    6763718    rs2305805    A    G    153.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=58.05;MQ0=0;MQRankSum=-0.869;QD=12.76;ReadPosRankSum=-2.047;SNPEFF_AMINO_ACID_CHANGE=L9P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6763691_6763827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH2D3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437152    GT:AD:DP:GQ:PL    0/1:6,6:12:99:183,0,214
19    6825032    rs12979659    T    C    1231.75    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=89;Dels=0.0;FS=0.836;HRun=1;HaplotypeScore=0.9973;MQ=59.48;MQ0=0;MQRankSum=-0.651;QD=13.84;ReadPosRankSum=-1.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    0/1:44,45:89:99:1262,0,1151
19    6828040    rs164022    G    C    342.57    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.224;DB;DP=25;Dels=0.0;FS=1.906;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.082;QD=13.7;ReadPosRankSum=-0.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    0/1:13,12:25:99:373,0,349
19    6832060    rs625828    T    A    162.91    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.377;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=12.53;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    0/1:7,6:13:99:193,0,244
19    6833072    rs308200    C    T    68.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.49;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    0/1:3,3:6:98.96:99,0,105
19    6833162    rs72281108    CT    C    37.60    QDFilter2    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=23;FS=3.214;HRun=16;HaplotypeScore=133.8151;IndelType=D;MQ=54.24;MQ0=0;MQRankSum=-0.867;QD=1.63;ReadPosRankSum=-0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    0/1:16,7:23:76.63:77,0,220
19    6833777    rs186295    A    G    2646.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.46;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2680,208,0
19    6833989    rs308199    G    T    1200.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1233,99,0
19    6836271    rs308196    A    C    129.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
19    6836760    rs308195    C    T    205.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
19    6836836    rs308194    G    A    142.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.866;MQ=37.32;MQ0=0;QD=28.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
19    6848220    rs331679    G    A    728.24    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=2.339;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.957;QD=21.42;ReadPosRankSum=1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304076    GT:AD:DP:GQ:PL    0/1:13,21:34:99:758,0,424
19    6890475    .    C    T    48.38    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.366;DP=18;Dels=0.0;FS=7.16;HRun=5;HaplotypeScore=3.7121;MQ=40.09;MQ0=0;MQRankSum=-2.727;QD=2.69;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:7,11:18:78.37:78,0,242
19    6890480    .    C    T    72.80    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.835;DP=18;Dels=0.0;FS=6.99;HRun=4;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=-2.604;QD=4.04;ReadPosRankSum=-0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:8,10:18:99:103,0,274
19    6896483    rs330877    G    A    2192    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_AMINO_ACID_CHANGE=A57T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6896409_6896552;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2225,166,0
19    6897082    rs72175542    C    CT    38.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DB;DP=14;FS=0.0;HRun=19;HaplotypeScore=120.1179;IndelType=I;MQ=34.17;MQ0=0;MQRankSum=-1.495;QD=2.57;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:6,5:14:4:78,4,0
19    6897392    rs330879    G    A    479.55    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.0;QD=11.99;ReadPosRankSum=0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:23,17:40:99:510,0,766
19    6897464    rs330880    C    G    458.84    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.97;DB;DP=35;Dels=0.0;FS=3.067;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=13.11;ReadPosRankSum=-1.374;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000450315    GT:AD:DP:GQ:PL    0/1:19,16:35:99:489,0,585
19    6898487    rs330882    G    T    203.73    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=28;Dels=0.0;FS=1.73;HRun=2;HaplotypeScore=1.8997;MQ=60.0;MQ0=0;MQRankSum=1.093;QD=7.28;ReadPosRankSum=-2.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:20,8:28:99:234,0,629
19    6901559    rs897740    A    G    40.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.21;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:2,2:4:70.61:71,0,71
19    6901715    rs897739    A    G    384.89    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.54;MQ0=0;MQRankSum=-0.179;QD=9.39;ReadPosRankSum=-0.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:25,16:41:99:415,0,872
19    6901891    rs897738    G    A    3508.68    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.512;DB;DP=230;DS;Dels=0.0;FS=1.627;HRun=1;HaplotypeScore=1.5226;MQ=59.9;MQ0=0;MQRankSum=1.267;QD=15.26;ReadPosRankSum=2.322;SNPEFF_AMINO_ACID_CHANGE=D122N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6901886_6902032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381404    GT:AD:DP:GQ:PL    0/1:107,122:230:99:3509,0,3368
19    6902229    rs415421    G    C    180.51    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.466;QD=16.41;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:5,6:11:99:211,0,179
19    6903920    rs443658    A    G    959.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.189;DB;DP=54;Dels=0.0;FS=1.079;HRun=0;HaplotypeScore=2.9397;MQ=59.65;MQ0=0;MQRankSum=0.813;QD=17.77;ReadPosRankSum=-0.938;SNPEFF_AMINO_ACID_CHANGE=N113S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6903821_6903961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381407    GT:AD:DP:GQ:PL    0/1:24,30:54:99:989,0,774
19    6904137    rs370094    C    T    935.44    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.153;DB;DP=68;Dels=0.0;FS=0.929;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=1.337;QD=13.76;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=A157V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6904047_6904193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381407    GT:AD:DP:GQ:PL    0/1:35,33:68:99:965,0,1188
19    6906321    rs447684    T    C    83.89    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=7.63;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:5,6:11:99:114,0,165
19    6906357    rs366181    C    G    273.60    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=19;Dels=0.0;FS=3.039;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.815;QD=14.4;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:8,11:19:99:304,0,244
19    6908557    rs8113805    G    A    34.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=5.8;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:4,2:6:64.82:65,0,134
19    6908675    rs76155811    C    CT    416.05    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.141;DB;DP=56;FS=0.0;HRun=13;HaplotypeScore=218.7034;IndelType=I;MQ=58.3;MQ0=0;MQRankSum=-1.704;QD=7.3;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:29,23:56:99:455,0,226
19    6908895    rs147650109    A    G    173.12    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.312;QD=13.32;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    0/1:7,6:13:99:203,0,239
19    6913707    rs466876    C    T    873.42    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.543;DB;DP=76;Dels=0.0;FS=0.941;HRun=0;HaplotypeScore=0.734;MQ=59.39;MQ0=0;MQRankSum=0.116;QD=11.49;ReadPosRankSum=0.581;SNPEFF_AMINO_ACID_CHANGE=T212M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6913664_6913841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450315    GT:AD:DP:GQ:PL    0/1:45,31:76:99:903,0,1442
19    6913811    rs457857    A    G    3378.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.05;DB;DP=105;Dels=0.0;FS=3.958;HRun=0;HaplotypeScore=1.8332;MQ=59.12;MQ0=0;MQRankSum=0.32;QD=32.18;ReadPosRankSum=-0.32;SNPEFF_AMINO_ACID_CHANGE=I247V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6913664_6913841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450315    GT:AD:DP:GQ:PL    1/1:1,104:105:99:3379,212,0
19    6913878    rs462913    G    T    1855.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.027;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.962;QD=34.36;ReadPosRankSum=-0.385;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:1,53:54:99:1888,110,0
19    6916493    rs467439    G    A    354.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:387,30,0
19    6919416    rs139161692    ACTCTCT    A    279.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=34.7839;IndelType=D;MQ=29.0;MQ0=0;QD=55.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:321,15,0
19    6919529    rs171674    T    C    953.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.03;FS=0.0;HRun=2;HaplotypeScore=6.7656;MQ=53.14;MQ0=0;QD=29.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:1,30:31:81.24:987,81,0
19    6919624    rs373533    A    C    2415.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.47;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=K319Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6919559_6919758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450315    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2448,193,0
19    6919753    rs461645    A    G    2076.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.57;MQ0=0;QD=35.2;SNPEFF_AMINO_ACID_CHANGE=I362V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_6919559_6919758;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450315    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2110,159,0
19    6919879    rs252566    C    T    244.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
19    6934743    rs252550    T    G    77.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
19    6935113    rs252551    C    T    1803.08    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=53.9566;MQ=52.72;MQ0=0;QD=27.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1836,153,0
19    6935121    rs1160969    T    TAA    3166.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=2;HaplotypeScore=359.4286;IndelType=I;MQ=52.63;MQ0=0;QD=52.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:4,56:60:99:3209,172,0
19    6935290    rs252552    C    T    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
19    6937683    rs388711    A    G    2059.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.82;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2093,160,0
19    6939910    rs463891    G    A    196.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250572    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
19    6940189    rs464849    G    C    116.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543519    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
19    6960834    rs459883    A    C    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
19    6961182    rs460698    G    A    274.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:308,24,0
19    6963455    rs670152    A    G    192.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:226,18,0
19    6974564    rs466123    C    T    556.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:589,45,0
19    6976986    rs448941    T    C    120.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:153,12,0
19    6977061    rs436727    A    G    437.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:470,36,0
19    6977118    rs4807918    C    A    1003.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1037,75,0
19    6977211    rs4807919    A    G    4449.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.394;DB;DP=130;Dels=0.0;FS=3.855;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-1.854;QD=34.23;ReadPosRankSum=1.297;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,128:130:99:4450,289,0
19    6977409    rs7255801    C    T    3751.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.57;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3751,274,0
19    6977500    rs7254998    G    C    878.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:912,69,0
19    6980939    rs2035972    T    C    132.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.57;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
19    6981418    rs7249293    G    A    83.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
19    6981446    rs6510935    G    A    113.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.46;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:146,12,0
19    6981582    rs2035971    A    T    594.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:628,48,0
19    6981763    rs2035970    G    A    1458.65    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DB;DP=94;Dels=0.0;FS=1.907;HRun=0;HaplotypeScore=0.9332;MQ=59.51;MQ0=0;MQRankSum=0.567;QD=15.52;ReadPosRankSum=-0.235;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:43,51:94:99:1489,0,1230
19    6981849    rs1874003    T    C    1008.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1041,78,0
19    6981885    rs1874002    T    C    343.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.65;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:377,33,0
19    6984708    rs7247453    G    A    2805.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2839,205,0
19    6984927    rs34752448    T    C    735.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,25:26:60.19:768,60,0
19    6985101    rs11671608    G    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    6988662    rs8107779    T    C    419.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:452,33,0
19    6988791    rs8103492    G    C    2685.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=30.51;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2718,199,0
19    6988914    rs1466715    A    G    1574.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1607,123,0
19    6989025    rs1466714    C    T    283.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
19    6990702    rs12972391    A    G    573.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,16:17:45.15:607,45,0
19    6991010    rs8108538    C    T    142.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:175,15,0
19    6991022    rs4807921    C    T    41.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    7019417    rs34953878    C    T    113.01    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=6.12;MQ0=110;QD=0.99;SNPEFF_AMINO_ACID_CHANGE=G124S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7019172_7019741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010606.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358469    GT:AD:DP:GQ:PL    1/1:4,109:113:12.04:145,12,0
19    7030832    .    T    A    131.95    MQFilter40    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.24;MQ0=6;MQRankSum=2.359;QD=7.76;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329753    GT:AD:DP:GQ:PL    0/1:6,11:17:99:162,0,200
19    7039982    rs115243609    C    A    608.79    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.0;MQ0=0;QD=22.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381394    GT:AD:DP:GQ:PL    1/1:0,27:27:77.88:642,78,0
19    7051637    .    T    G    399.40    MQFilter40    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.076;DP=84;Dels=0.0;FS=2.42;HRun=0;HaplotypeScore=3.5913;MQ=34.35;MQ0=6;MQRankSum=-6.6;QD=4.75;ReadPosRankSum=1.657;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333843    GT:AD:DP:GQ:PL    0/1:44,40:84:99:429,0,1087
19    7051643    rs1651750    T    C    446.47    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.173;DB;DP=84;Dels=0.0;FS=2.482;HRun=1;HaplotypeScore=1.5592;MQ=34.41;MQ0=5;MQRankSum=-6.781;QD=5.32;ReadPosRankSum=1.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333843    GT:AD:DP:GQ:PL    0/1:42,42:84:99:476,0,1093
19    7056116    rs141621055    A    G    158.11    MQFilter40    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.485;DB;DP=31;Dels=0.0;FS=2.299;HRun=0;HaplotypeScore=0.0;MQ=32.37;MQ0=7;MQRankSum=-1.711;QD=5.1;ReadPosRankSum=0.613;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381393    GT:AD:DP:GQ:PL    0/1:17,14:31:99:188,0,489
19    7056329    .    C    A    129.11    MQFilter40;QDFilter2    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DP=103;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=6.6;MQ0=94;MQRankSum=-1.179;QD=1.25;ReadPosRankSum=0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381393    GT:AD:DP:GQ:PL    0/1:22,81:103:0.71:158,0,1
19    7056571    .    G    T    381.43    MQFilter40    AB=0.779;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.69;DP=154;Dels=0.0;FS=9.984;HRun=0;HaplotypeScore=0.9867;MQ=22.29;MQ0=2;MQRankSum=-0.523;QD=2.48;ReadPosRankSum=0.577;SNPEFF_AMINO_ACID_CHANGE=A130D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7056220_7056914;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333843    GT:AD:DP:GQ:PL    0/1:120,34:154:99:411,0,2314
19    7074872    rs2967648    G    A    93.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=15.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF557;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252840    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:126,12,0
19    7075524    rs2914570    G    C    134.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF557;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252840    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
19    7076255    rs1808555    T    C    354.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF557;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252840    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:387,30,0
19    7083629    rs966591    A    G    515.65    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.203;DB;DP=37;Dels=0.0;FS=1.323;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=13.94;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=S382;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7082889_7087979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF557;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439035    GT:AD:DP:GQ:PL    0/1:18,19:37:99:546,0,625
19    7083761    rs8110740    A    G    894.02    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=52;Dels=0.0;FS=4.487;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.687;QD=17.19;ReadPosRankSum=-0.216;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF557;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252840    GT:AD:DP:GQ:PL    0/1:20,32:52:99:924,0,628
19    7116963    rs1051690    T    C    256.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
19    7122511    rs34073323    AT    A    994.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=1;HaplotypeScore=72.1151;IndelType=D;MQ=59.95;MQ0=0;QD=38.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:1,25:26:75.25:1036,75,0
19    7129086    rs2860173    A    G    209.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
19    7150418    rs2252673    C    G    34.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.77;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:4,2:6:64.59:65,0,149
19    7153006    rs62124500    A    C    79.24    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=13;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9966;MQ=48.16;MQ0=0;MQRankSum=-1.2;QD=6.1;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:6,7:13:51.04:109,0,51
19    7153011    rs72996158    A    C    201.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9966;MQ=47.03;MQ0=0;MQRankSum=1.159;QD=16.83;ReadPosRankSum=0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:1,11:12:21.04:235,21,0
19    7153044    .    C    CACCACACAT    977.76    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=0;HaplotypeScore=181.9313;IndelType=I;MQ=43.56;MQ0=0;QD=88.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:4,6:11:27.09:1020,27,0
19    7162914    rs139602807    AGT    A    242.40    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=40.0909;IndelType=D;MQ=57.87;MQ0=0;MQRankSum=0.589;QD=22.04;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:2,8:11:66.23:281,0,66
19    7163140    rs2245655    T    G    1068.07    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=2.379;DB;DP=111;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=0.709;QD=9.62;ReadPosRankSum=0.564;SNPEFF_AMINO_ACID_CHANGE=P644;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7163043_7163210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:68,42:111:99:1098,0,1903
19    7163154    rs2963    G    A    1190.24    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.037;DB;DP=119;Dels=0.0;FS=3.51;HRun=2;HaplotypeScore=0.8667;MQ=58.82;MQ0=0;MQRankSum=-0.537;QD=10.0;ReadPosRankSum=0.937;SNPEFF_AMINO_ACID_CHANGE=L640;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7163043_7163210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:74,45:119:99:1220,0,2292
19    7163214    rs2245649    T    C    859.29    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=2.095;DB;DP=93;Dels=0.0;FS=4.432;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.396;QD=9.24;ReadPosRankSum=1.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:63,30:93:99:889,0,1858
19    7163230    rs2245648    T    C    652.86    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.964;DB;DP=79;Dels=0.0;FS=0.963;HRun=0;HaplotypeScore=0.9958;MQ=59.22;MQ0=0;MQRankSum=-0.543;QD=8.26;ReadPosRankSum=-0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:52,27:79:99:683,0,1521
19    7163326    rs2352953    T    C    352.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.973;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.22;MQ0=0;MQRankSum=-0.375;QD=14.69;ReadPosRankSum=1.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:12,12:24:99:382,0,432
19    7166036    rs62124510    C    A    49.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9646;MQ=44.98;MQ0=0;MQRankSum=-1.3;QD=7.04;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:4,3:7:79.24:79,0,134
19    7166109    rs2059807    A    G    673.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.38;MQ0=0;QD=29.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:0,21:23:57.16:707,57,0
19    7166388    rs2229429    G    A    438.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_AMINO_ACID_CHANGE=D546;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7166165_7166415;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:472,36,0
19    7166541    rs3815901    A    G    84.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    7168213    rs2245143    C    T    75.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.66;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:3,3:6:80.92:106,0,81
19    7168240    rs41505247    C    G    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,70
19    7170505    rs7252268    C    A    1226.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7791;MQ=60.0;MQ0=0;MQRankSum=-0.77;QD=34.08;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:1,35:36:59.68:1260,60,0
19    7170517    rs2860178    A    G    1192.33    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=31.38;ReadPosRankSum=-1.641;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    1/1:1,37:38:66.08:1225,66,0
19    7172209    rs8113777    C    T    458.35    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.034;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.034;QD=20.83;ReadPosRankSum=-0.785;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:8,14:22:99:488,0,247
19    7172526    rs41412545    C    A    660.07    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.533;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.427;QD=18.86;ReadPosRankSum=-1.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:13,22:35:99:690,0,437
19    7184275    rs2860179    C    T    236.59    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=17;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=13.92;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:9,8:17:99:267,0,219
19    7184518    rs891087    G    A    417.08    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DB;DP=25;Dels=0.0;FS=13.931;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.638;QD=16.68;ReadPosRankSum=-0.915;SNPEFF_AMINO_ACID_CHANGE=D261;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7184327_7184648;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:10,15:25:99:447,0,305
19    7267277    rs3837940    AT    A    117.11    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.657;DB;DP=16;FS=0.0;HRun=5;HaplotypeScore=38.8938;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=7.32;ReadPosRankSum=1.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302850    GT:AD:DP:GQ:PL    0/1:10,6:16:99:156,0,362
19    7504767    rs10401415    G    T    124.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.098;QD=12.43;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    0/1:5,5:10:99:154,0,176
19    7504982    rs10422503    C    T    162.39    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.906;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.906;QD=9.02;ReadPosRankSum=2.626;SNPEFF_AMINO_ACID_CHANGE=G52;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7504574_7505368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359920    GT:AD:DP:GQ:PL    0/1:11,7:18:99:192,0,342
19    7505163    .    C    T    538.99    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.539;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.13;MQ0=0;MQRankSum=-1.107;QD=10.17;ReadPosRankSum=-0.237;SNPEFF_AMINO_ACID_CHANGE=R113C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7504574_7505368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359920    GT:AD:DP:GQ:PL    0/1:29,24:53:99:569,0,844
19    7506668    rs2287909    T    G    867.11    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.395;DB;DP=68;Dels=0.0;FS=0.929;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.534;QD=12.75;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    0/1:31,37:68:99:897,0,1043
19    7506755    rs2287910    A    G    1202.22    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.46;DB;DP=95;Dels=0.0;FS=2.848;HRun=0;HaplotypeScore=2.5721;MQ=59.27;MQ0=0;MQRankSum=-0.873;QD=12.65;ReadPosRankSum=-1.435;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    0/1:44,51:95:99:1232,0,1340
19    7506982    rs10424311    C    G    855.87    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=3.027;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4476;MQ=54.06;MQ0=0;MQRankSum=0.545;QD=12.97;ReadPosRankSum=-1.885;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    0/1:35,31:66:99:886,0,1001
19    7507010    rs71843481    CCCTTCCTTCCTTCCTTCCTTCCTTCCTT    C    1171.90    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.795;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=970.0548;IndelType=D;MQ=49.56;MQ0=0;MQRankSum=-1.354;QD=29.3;ReadPosRankSum=0.598;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    0/1:28,9:40:99:1211,0,1340
19    7507102    rs10403528    C    T    64.15    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.58;MQ0=0;MQRankSum=-0.143;QD=5.83;ReadPosRankSum=-0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    0/1:5,6:11:94.15:94,0,136
19    7518268    rs11463454    T    TC    1253.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=2;HaplotypeScore=65.3636;IndelType=I;MQ=59.61;MQ0=0;QD=40.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    1/1:1,30:31:90.30:1296,90,0
19    7528734    rs2287918    A    G    236.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.31;SNPEFF_AMINO_ACID_CHANGE=Q543R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7528704_7528841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:270,21,0
19    7529216    rs6603094    A    G    71.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
19    7533767    rs10405143    T    G    286.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_AMINO_ACID_CHANGE=R833;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7533711_7534017;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319670    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:320,24,0
19    7533850    rs9329368    A    G    154.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.81;SNPEFF_AMINO_ACID_CHANGE=N1019S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7533711_7534017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359920    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:188,15,0
19    7550844    rs34970001    G    A    979.26    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=53;Dels=0.0;FS=13.15;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.583;QD=18.48;ReadPosRankSum=1.232;SNPEFF_AMINO_ACID_CHANGE=S43;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7550724_7550912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX11G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221480    GT:AD:DP:GQ:PL    0/1:23,30:53:99:1009,0,717
19    7569282    rs484870    A    G    518.66    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.535;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6828;MQ=58.87;MQ0=0;MQRankSum=0.483;QD=12.65;ReadPosRankSum=0.222;SNPEFF_AMINO_ACID_CHANGE=D256G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7569197_7569297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361664    GT:AD:DP:GQ:PL    0/1:20,21:41:99:549,0,572
19    7570031    rs653751    G    A    119.31    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.731;QD=23.86;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419849    GT:AD:DP:GQ:PL    0/1:1,4:5:20.20:149,0,20
19    7570978    rs685034    T    C    376.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.676;MQ=57.05;MQ0=0;MQRankSum=-0.124;QD=11.78;ReadPosRankSum=-1.369;SNPEFF_AMINO_ACID_CHANGE=P378;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7570850_7571051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361664    GT:AD:DP:GQ:PL    0/1:16,16:32:99:407,0,431
19    7570990    rs685048    A    G    281.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=4.14;DB;DP=30;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.9665;MQ=56.85;MQ0=0;MQRankSum=0.288;QD=9.38;ReadPosRankSum=-0.155;SNPEFF_AMINO_ACID_CHANGE=R382;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7570850_7571051;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361664    GT:AD:DP:GQ:PL    0/1:18,12:30:99:311,0,472
19    7571030    rs3826736    T    A    151.54    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=19;Dels=0.0;FS=5.497;HRun=1;HaplotypeScore=1.9683;MQ=54.95;MQ0=0;MQRankSum=1.025;QD=7.98;ReadPosRankSum=-0.146;SNPEFF_AMINO_ACID_CHANGE=Y396N;SNPEFF_CODON_CHANGE=Tac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7570850_7571051;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361664    GT:AD:DP:GQ:PL    0/1:11,7:19:99:182,0,269
19    7573098    rs475923    T    A    271.38    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=20;Dels=0.0;FS=5.454;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.595;QD=13.57;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Y434N;SNPEFF_CODON_CHANGE=Tac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7573092_7573336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361664    GT:AD:DP:GQ:PL    0/1:11,9:20:99:301,0,336
19    7573287    rs1133378    C    T    68.34    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=1.9942;MQ=58.05;MQ0=0;MQRankSum=0.689;QD=5.69;ReadPosRankSum=0.135;SNPEFF_AMINO_ACID_CHANGE=P497S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7573092_7573336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361664    GT:AD:DP:GQ:PL    0/1:7,5:12:98.33:98,0,223
19    7573297    rs608144    T    C    56.28    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9942;MQ=58.33;MQ0=0;MQRankSum=-0.133;QD=4.02;ReadPosRankSum=0.667;SNPEFF_AMINO_ACID_CHANGE=L500P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7573092_7573336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361664    GT:AD:DP:GQ:PL    0/1:9,5:14:86.27:86,0,230
19    7573301    rs1133380    C    T    60.78    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9942;MQ=58.33;MQ0=0;MQRankSum=-1.067;QD=4.34;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=C501;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7573092_7573336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361664    GT:AD:DP:GQ:PL    0/1:9,5:14:90.78:91,0,229
19    7584086    rs678539    T    C    778.29    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.617;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.41;MQ0=0;MQRankSum=0.869;QD=17.69;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF358;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361576    GT:AD:DP:GQ:PL    0/1:14,30:44:99:808,0,367
19    7593169    rs2305889    A    G    344.65    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.054;QD=12.76;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264079    GT:AD:DP:GQ:PL    0/1:14,12:27:99:375,0,432
19    7593589    rs612862    C    T    388.43    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DB;DP=26;Dels=0.0;FS=3.834;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.115;QD=14.94;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=N293;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7593483_7593589;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394321    GT:AD:DP:GQ:PL    0/1:12,14:26:99:418,0,243
19    7594159    rs625910    G    A    153.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=12.81;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264079    GT:AD:DP:GQ:PL    0/1:4,8:12:99:184,0,135
19    7595050    rs71844093    GGCCATTCATGTGGGGCCCCA    G    1350.44    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=3.873;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=414.3894;IndelType=D;MQ=51.07;MQ0=0;MQRankSum=-1.202;QD=61.38;ReadPosRankSum=0.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264079    GT:AD:DP:GQ:PL    0/1:9,13:22:99:1389,0,2301
19    7595074    rs4520943    A    G    269.04    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.892;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.788;MQ=51.87;MQ0=0;MQRankSum=1.519;QD=11.21;ReadPosRankSum=1.767;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCOLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264079    GT:AD:DP:GQ:PL    0/1:13,11:24:99:299,0,105
19    7606737    rs492092    G    C    89.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    7607441    rs574930    C    T    83.81    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=11.97;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:2,5:7:68.41:114,0,68
19    7607564    rs620744    T    C    45.36    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.311;QD=3.24;ReadPosRankSum=1.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:11,3:14:75.35:75,0,360
19    7619199    rs534464    C    G    318.74    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=1.062;DB;DP=56;Dels=0.0;FS=2.509;HRun=3;HaplotypeScore=1.7333;MQ=58.76;MQ0=0;MQRankSum=-0.328;QD=5.69;ReadPosRankSum=1.024;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:41,15:56:99:349,0,1345
19    7619239    rs597582    T    C    322.81    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.624;DB;DP=46;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.473;QD=7.02;ReadPosRankSum=-0.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:30,16:46:99:353,0,1034
19    7619329    rs598023    G    A    108.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.55;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,132
19    7619338    rs598028    G    C    107.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=17.95;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:2,4:6:61.50:138,0,61
19    7619522    rs522776    G    A    394.37    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.461;DB;DP=33;Dels=0.0;FS=3.352;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.603;QD=11.95;ReadPosRankSum=2.119;SNPEFF_AMINO_ACID_CHANGE=S784;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7619441_7619609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545201    GT:AD:DP:GQ:PL    0/1:13,20:33:99:424,0,411
19    7619647    rs599328    G    C    54.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=3.88;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:6,8:14:84.29:84,0,173
19    7619648    rs599330    T    C    54.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=3.88;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:6,8:14:84.29:84,0,173
19    7619700    rs524530    G    A    109.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.731;QD=18.21;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:2,4:6:25.60:139,0,26
19    7621981    rs2446176    A    G    345.14    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.927;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.07;MQ0=0;MQRankSum=0.637;QD=13.81;ReadPosRankSum=-0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:12,13:25:99:375,0,317
19    7624079    rs538852    G    A    485.38    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.779;DB;DP=26;Dels=0.0;FS=20.607;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.013;QD=18.67;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:11,15:26:99:515,0,267
19    7626013    rs71930251    AC    A    344.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=6;HaplotypeScore=54.8763;IndelType=D;MQ=60.77;MQ0=0;QD=24.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    1/1:1,13:14:36.09:387,36,0
19    7626069    rs558233    C    T    247.03    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.266;DB;DP=19;Dels=0.0;FS=4.32;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.776;QD=13.0;ReadPosRankSum=1.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221249    GT:AD:DP:GQ:PL    0/1:10,9:19:99:277,0,350
19    7735089    rs10402265    G    C    146.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.85;MQ0=0;QD=29.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RETN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221515    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:179,15,0
19    7742345    rs67123131    G    A    80.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=16.09;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333598    GT:AD:DP:GQ:PL    0/1:2,3:5:22.31:110,0,22
19    7742802    rs10401670    T    C    590.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.902;QD=16.4;ReadPosRankSum=0.459;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333598    GT:AD:DP:GQ:PL    0/1:18,18:36:99:620,0,599
19    7743159    rs74489689    G    A    1256.17    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=139;Dels=0.0;FS=3.378;HRun=0;HaplotypeScore=2.5586;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=9.04;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333598    GT:AD:DP:GQ:PL    0/1:84,54:139:99:1286,0,2600
19    7747293    rs6952    T    G    111.47    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=13.93;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=S52A;SNPEFF_CODON_CHANGE=Tcg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7747128_7747748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317378    GT:AD:DP:GQ:PL    0/1:3,5:8:96.56:141,0,97
19    7754964    rs4996977    T    C    48.78    SnpCluster    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.234;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.23;MQ0=0;MQRankSum=-1.545;QD=2.71;ReadPosRankSum=-0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:12,6:18:78.77:79,0,404
19    7754968    rs4996976    A    G    51.22    SnpCluster    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=21;Dels=0.0;FS=4.559;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.713;QD=2.44;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:13,8:21:81.22:81,0,443
19    7754971    rs4996975    C    T    120.60    SnpCluster    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.37;DB;DP=23;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=53.67;MQ0=0;MQRankSum=-1.795;QD=5.24;ReadPosRankSum=-1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:14,9:23:99:151,0,483
19    7755056    rs2228138    G    A    934.52    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.972;DB;DP=76;Dels=0.0;FS=0.863;HRun=0;HaplotypeScore=0.8941;MQ=57.9;MQ0=0;MQRankSum=0.239;QD=12.3;ReadPosRankSum=1.018;SNPEFF_AMINO_ACID_CHANGE=H238;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7755045_7755151;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360067    GT:AD:DP:GQ:PL    0/1:39,37:76:99:965,0,995
19    7755159    rs4996973    A    G    356.35    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.04;DB;DP=28;Dels=0.0;FS=2.251;HRun=5;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.981;QD=12.73;ReadPosRankSum=-1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:15,13:28:99:386,0,474
19    7755213    rs4996972    C    T    463.22    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.694;QD=13.62;ReadPosRankSum=1.804;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:19,15:34:99:493,0,564
19    7755285    rs28364072    A    G    319.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.055;DB;DP=40;Dels=0.0;FS=5.077;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.404;QD=7.98;ReadPosRankSum=-1.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:24,16:40:99:349,0,636
19    7755469    rs2277995    T    C    34.70    MQFilter40;SnpCluster    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.0;MQ0=0;MQRankSum=-3.172;QD=2.04;ReadPosRankSum=-1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:5,11:17:64.69:65,0,138
19    7755472    rs74927160    G    T    46.23    MQFilter40;SnpCluster    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=17;Dels=0.0;FS=4.472;HRun=0;HaplotypeScore=0.7887;MQ=39.0;MQ0=0;MQRankSum=-3.172;QD=2.72;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:6,11:17:76.23:76,0,177
19    7755478    rs75584211    T    C    63.17    MQFilter40;SnpCluster    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.793;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=39.54;MQ0=0;MQRankSum=-3.172;QD=3.95;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:5,11:16:93.16:93,0,151
19    7755479    rs78283814    G    A    59.28    MQFilter40;SnpCluster    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=39.54;MQ0=0;MQRankSum=-3.172;QD=3.71;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:5,11:16:89.28:89,0,160
19    7755482    rs77121754    A    G    71.09    SnpCluster    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=41.03;MQ0=0;MQRankSum=-2.607;QD=4.18;ReadPosRankSum=-2.486;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:5,12:17:99:101,0,139
19    7755485    rs76013233    G    A    41.54    SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=42.31;MQ0=0;MQRankSum=-2.793;QD=2.31;ReadPosRankSum=-1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:6,12:18:71.53:72,0,167
19    7755486    .    C    T    63.13    SnpCluster    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=41.03;MQ0=0;MQRankSum=-2.793;QD=3.71;ReadPosRankSum=-1.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:5,12:17:93.12:93,0,161
19    7755571    rs2277993    G    A    35.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.69;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:65,0,31
19    7761812    rs2277989    A    G    79.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
19    7762380    rs113716290    TCCCCTGCAA    T    448.72    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=3.377;DB;DP=22;FS=8.512;HRun=0;HaplotypeScore=175.1382;IndelType=D;MQ=52.74;MQ0=0;MQRankSum=-2.324;QD=20.4;ReadPosRankSum=1.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:17,5:22:99:488,0,1719
19    7763045    rs7249320    C    A    35.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.9;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:4,2:6:65.40:65,0,147
19    7764157    rs12984870    A    G    94.21    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.186;QD=8.56;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:5,6:11:99:124,0,168
19    7764363    rs55828544    GTTTT    G    616.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;DB;DP=24;FS=0.0;HRun=15;HaplotypeScore=174.877;IndelType=D;MQ=52.81;MQ0=0;MQRankSum=-0.315;QD=25.69;ReadPosRankSum=0.946;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    1/1:6,11:24:52.88:658,53,0
19    7764436    rs12980031    G    T    383.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:416,33,0
19    7764473    rs62111766    C    A    56.81    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.663;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;MQRankSum=-0.278;QD=5.16;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:7,4:11:86.80:87,0,261
19    7764545    rs79777095    G    GC    727.83    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.571;DB;DP=31;FS=1.641;HRun=4;HaplotypeScore=69.8182;IndelType=I;MQ=59.61;MQ0=0;MQRankSum=0.57;QD=23.48;ReadPosRankSum=-1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:10,20:31:99:767,0,247
19    7764741    rs2287867    G    A    93.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.32;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCER2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346664    GT:AD:DP:GQ:PL    0/1:3,4:7:93.94:123,0,94
19    7794605    rs2277997    T    C    1352.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328853    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1385,102,0
19    7795813    rs6603117    G    A    73.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=10.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328853    GT:AD:DP:GQ:PL    1/1:0,5:7:11.99:106,12,0
19    7796497    rs11260026    C    G    437.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328853    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:471,36,0
19    7812536    rs2287886    A    G    265.01    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9831;MQ=60.0;MQ0=0;MQRankSum=-0.106;QD=12.05;ReadPosRankSum=-0.528;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD209;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204801    GT:AD:DP:GQ:PL    0/1:12,10:22:99:295,0,353
19    7827955    rs2287887    C    A    161.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248228    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
19    7831700    rs562607    G    C    1483.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC4M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248228    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1516,114,0
19    7853783    rs62125080    C    T    90.19    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=12.88;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CLEC4GP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512667    GT:AD:DP:GQ:PL    0/1:3,4:7:85.45:120,0,85
19    7854742    rs581527    T    G    265.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.133;DB;DP=15;Dels=0.0;FS=5.756;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=17.7;ReadPosRankSum=1.333;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CLEC4GP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512667    GT:AD:DP:GQ:PL    0/1:6,9:15:99:296,0,127
19    7911343    rs2307002    T    A    40.11    QDFilter2    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.157;DB;DP=41;Dels=0.0;FS=5.136;HRun=0;HaplotypeScore=0.6651;MQ=59.09;MQ0=0;MQRankSum=-0.363;QD=0.98;ReadPosRankSum=0.726;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270530    GT:AD:DP:GQ:PL    0/1:25,15:41:70.10:70,0,775
19    7912481    rs112506951    G    GA    96.98    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;FS=0.0;HRun=10;HaplotypeScore=17.9068;IndelType=I;MQ=61.53;MQ0=0;MQRankSum=0.198;QD=13.85;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270530    GT:AD:DP:GQ:PL    0/1:2,5:7:28.25:136,0,28
19    7913974    rs555609    T    C    195.64    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=15;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.109;QD=13.04;ReadPosRankSum=0.627;SNPEFF_AMINO_ACID_CHANGE=H165;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7913807_7914031;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270530    GT:AD:DP:GQ:PL    0/1:7,8:15:99:226,0,203
19    7916475    rs2452012    T    C    727.08    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.661;DB;DP=65;Dels=0.0;FS=2.444;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.277;QD=11.19;ReadPosRankSum=-1.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270530    GT:AD:DP:GQ:PL    0/1:37,28:65:99:757,0,1077
19    7916620    rs580790    A    G    217.66    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.466;QD=15.55;ReadPosRankSum=-1.62;SNPEFF_AMINO_ACID_CHANGE=A317;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7916567_7916656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270530    GT:AD:DP:GQ:PL    0/1:5,9:14:96.02:248,0,96
19    7918103    rs526464    A    G    2055.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270530    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2088,162,0
19    7928462    rs10410459    T    C    171.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_AMINO_ACID_CHANGE=Y753;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7928310_7929861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EVI5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270530    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:205,15,0
19    7944348    rs80161304    TC    T    1591.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=2;HaplotypeScore=112.0932;IndelType=D;MQ=60.77;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1634,126,0
19    7944849    rs11260038    A    C    645.67    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.383;DB;DP=50;Dels=0.0;FS=1.847;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=1.651;QD=12.91;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,23:50:99:676,0,829
19    7963914    rs524029    A    C    3206.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=59.74;MQ0=0;QD=36.43;SNPEFF_AMINO_ACID_CHANGE=V169;SNPEFF_CODON_CHANGE=gtA/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7963546_7966906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306708    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3239,250,0
19    7963949    rs2042919    A    G    853.05    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.178;DB;DP=66;Dels=0.0;FS=2.817;HRun=1;HaplotypeScore=0.8321;MQ=59.65;MQ0=0;MQRankSum=-0.388;QD=12.92;ReadPosRankSum=-0.059;SNPEFF_AMINO_ACID_CHANGE=E181G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7963546_7966906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306708    GT:AD:DP:GQ:PL    0/1:36,30:66:99:883,0,1097
19    7963976    rs2115108    T    C    405.30    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.386;DB;DP=41;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;MQRankSum=0.379;QD=9.89;ReadPosRankSum=-1.163;SNPEFF_AMINO_ACID_CHANGE=M190T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7963546_7966906;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8E;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306708    GT:AD:DP:GQ:PL    0/1:22,19:41:99:435,0,758
19    7964616    rs45603833    G    C    402.52    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=2.6;DB;DP=46;Dels=0.0;FS=2.774;HRun=3;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.941;QD=8.75;ReadPosRankSum=0.371;SNPEFF_AMINO_ACID_CHANGE=T403;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7963546_7966906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306708    GT:AD:DP:GQ:PL    0/1:31,15:46:99:433,0,879
19    7964727    rs3745382    G    A    286.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.576;DB;DP=22;Dels=0.0;FS=1.74;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.263;QD=13.01;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=D180;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7963689_7968427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010336.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539278    GT:AD:DP:GQ:PL    0/1:11,11:22:99:316,0,382
19    7965339    rs3745383    C    T    429.81    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=19.54;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=Y644;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7963546_7966906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306708    GT:AD:DP:GQ:PL    0/1:8,14:22:99:460,0,213
19    7970635    rs4804833    A    G    3970.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.81;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC8E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306708    GT:AD:DP:GQ:PL    1/1:0,124:124:99:3971,340,0
19    7975464    rs11879199    A    C    383.74    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.326;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.705;QD=15.99;ReadPosRankSum=0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475022    GT:AD:DP:GQ:PL    0/1:11,13:24:99:414,0,304
19    7976116    rs10412007    T    C    826.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465324    GT:AD:DP:GQ:PL    1/1:0,28:28:69.19:859,69,0
19    7976529    rs2303700    T    C    144.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465324    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
19    7976627    rs480296    A    G    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP2K7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465324    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    7986638    rs475002    C    G    202.16    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.5;DB;DP=21;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=9.63;ReadPosRankSum=-0.035;SNPEFF_AMINO_ACID_CHANGE=L118V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7986590_7986658;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221573    GT:AD:DP:GQ:PL    0/1:10,11:21:99:232,0,323
19    7986685    rs7250749    G    A    55.49    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=11;Dels=0.0;FS=2.43;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.036;QD=5.04;ReadPosRankSum=-1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318978    GT:AD:DP:GQ:PL    0/1:6,5:11:85.49:85,0,210
19    7997870    rs4804243    C    A    202.25    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.696;QD=15.56;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394102    GT:AD:DP:GQ:PL    0/1:5,8:13:99:232,0,169
19    7998386    rs118048213    G    C    1937.61    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.403;DB;DP=178;Dels=0.0;FS=1.909;HRun=0;HaplotypeScore=0.734;MQ=59.87;MQ0=0;MQRankSum=-0.633;QD=10.89;ReadPosRankSum=0.007;SNPEFF_AMINO_ACID_CHANGE=N251K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_7998370_7998455;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM44;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270538    GT:AD:DP:GQ:PL    0/1:106,72:178:99:1968,0,3136
19    7998587    rs78845055    C    T    261.07    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=20;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.532;QD=13.05;ReadPosRankSum=1.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394102    GT:AD:DP:GQ:PL    0/1:11,9:20:99:291,0,356
19    8000104    rs3745387    A    G    39.37    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=52.28;MQ0=0;MQRankSum=0.55;QD=5.62;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394102    GT:AD:DP:GQ:PL    0/1:4,3:7:69.36:69,0,96
19    8000146    rs3745388    A    G    35.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.99;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394102    GT:AD:DP:GQ:PL    0/1:4,2:6:65.93:66,0,142
19    8028544    rs14394    A    G    704.41    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.364;DB;DP=85;Dels=0.0;FS=1.942;HRun=0;HaplotypeScore=4.7619;MQ=59.51;MQ0=0;MQRankSum=-0.057;QD=8.29;ReadPosRankSum=0.9;SNPEFF_AMINO_ACID_CHANGE=G268;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8023458_8028691;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407627    GT:AD:DP:GQ:PL    0/1:58,27:85:99:734,0,1766
19    8032680    rs1077340    C    T    506.28    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.416;DB;DP=29;Dels=0.0;FS=4.41;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.517;QD=17.46;ReadPosRankSum=-0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351593    GT:AD:DP:GQ:PL    0/1:11,18:29:99:536,0,328
19    8045862    rs75461160    G    A    32.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.231;QD=5.46;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351593    GT:AD:DP:GQ:PL    0/1:3,3:6:62.75:63,0,108
19    8117869    rs11575008    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253451    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
19    8122737    rs2303164    G    A    2051.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7853;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_AMINO_ACID_CHANGE=V82I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8122685_8122748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315626    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2084,153,0
19    8122767    rs2303165    T    C    2940.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_AMINO_ACID_CHANGE=S135;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8122688_8122804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL25;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253451    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2973,217,0
19    8127075    rs34145389    C    G    1867.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.74;MQ0=0;QD=33.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCL25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315626    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1901,144,0
19    8136839    rs73005512    G    C    777.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,29:29:66.20:810,66,0
19    8137102    rs7256904    G    T    1356.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:1,41:42:99:1389,108,0
19    8150978    .    G    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=8.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
19    8150989    .    G    GAA    410.58    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=95.768;IndelType=I;MQ=41.96;MQ0=0;QD=45.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:4,5:9:25.33:453,25,0
19    8151261    rs11665747    C    T    406.71    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=31;Dels=0.0;FS=9.874;HRun=1;HaplotypeScore=0.8941;MQ=56.96;MQ0=0;MQRankSum=-0.415;QD=13.12;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:15,16:31:99:437,0,486
19    8151352    rs11667366    A    T    33.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9916;MQ=29.0;MQ0=0;QD=11.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:65,6,0
19    8152725    rs12460643    A    G    1936.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.34;SNPEFF_AMINO_ACID_CHANGE=D2201;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8152709_8152831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1970,156,0
19    8154760    rs35033566    T    C    109.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:142,12,0
19    8154990    rs35002391    C    T    780.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=32.51;SNPEFF_AMINO_ACID_CHANGE=R179K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8154990_8155135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341066    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:813,63,0
19    8156290    rs8104453    A    G    1467.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1500,126,0
19    8160517    rs10413994    A    G    210.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
19    8161126    rs12151307    A    G    334.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:367,27,0
19    8162121    rs45624733    C    T    190.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:223,18,0
19    8166040    rs4804060    G    A    52.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
19    8167830    rs12986396    A    G    716.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:750,57,0
19    8168326    rs3865463    G    A    878.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,25:25:69.21:911,69,0
19    8168399    rs4289098    G    A    1760.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=60.0;MQ0=0;QD=29.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1793,132,0
19    8168545    rs33967815    C    T    911.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=G1614S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8168446_8168571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:944,69,0
19    8171252    rs2126971    A    G    127.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:160,12,0
19    8173892    rs1382354    A    T    85.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
19    8174839    rs56316217    C    T    66.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:99,9,0
19    8176814    .    A    C    59    HaplotypeScoreFilter13    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.531;DP=21;Dels=0.0;FS=3.59;HRun=6;HaplotypeScore=14.4992;MQ=46.42;MQ0=0;MQRankSum=-3.307;QD=2.81;ReadPosRankSum=1.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:9,12:21:88.99:89,0,242
19    8182174    rs118050938    G    A    90.35    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.202;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.212;QD=6.45;ReadPosRankSum=1.626;SNPEFF_AMINO_ACID_CHANGE=D1155;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8182053_8182175;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:10,4:14:99:120,0,356
19    8188573    rs79793764    C    T    258.61    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.164;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-1.164;QD=16.16;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:7,9:16:99:289,0,203
19    8191238    rs10906993    C    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
19    8191248    rs10906994    A    G    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    8191323    rs7260558    T    C    133.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
19    8191401    rs3813778    G    A    59.56    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=11;Dels=0.0;FS=3.233;HRun=0;HaplotypeScore=0.8667;MQ=58.29;MQ0=0;MQRankSum=0.296;QD=5.41;ReadPosRankSum=0.546;SNPEFF_AMINO_ACID_CHANGE=C835;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8191352_8191489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:8,3:11:89.56:90,0,235
19    8194363    rs4804270    T    G    518.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;QD=37.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,14:14:42.09:552,42,0
19    8196444    rs4804271    C    T    1346.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=D662N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8196438_8196713;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1379,108,0
19    8196508    rs12974280    G    C    437.47    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5608;MQ=59.52;MQ0=0;MQRankSum=1.225;QD=9.11;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=S640;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8196438_8196713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:28,20:48:99:467,0,774
19    8200987    rs118115502    C    T    292.73    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.129;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8401;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=9.44;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:19,12:31:99:323,0,604
19    8201051    rs8112525    T    C    1221.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1255,99,0
19    8201249    rs9749144    C    A    131.21    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.595;DB;DP=24;Dels=0.0;FS=1.935;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.735;QD=5.47;ReadPosRankSum=-0.525;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:17,7:24:99:161,0,570
19    8201279    rs75077069    C    T    294.32    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.078;DB;DP=29;Dels=0.0;FS=9.7;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.711;QD=10.15;ReadPosRankSum=-0.252;SNPEFF_AMINO_ACID_CHANGE=E446;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8201272_8201415;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:19,10:29:99:324,0,616
19    8202944    rs1531547    G    C    255.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
19    8203188    rs34278476    G    A    85.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.551;QD=5.7;ReadPosRankSum=1.408;SNPEFF_AMINO_ACID_CHANGE=C346;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8203025_8203207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:10,5:15:99:115,0,316
19    8203328    rs7246376    G    A    263.39    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.661;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.03;MQ0=0;MQRankSum=0.409;QD=10.97;ReadPosRankSum=0.85;SNPEFF_AMINO_ACID_CHANGE=P329L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8203296_8203448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:10,14:24:99:293,0,261
19    8206553    rs73922237    T    C    550.72    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=2.376;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.15;MQ0=0;MQRankSum=0.203;QD=16.69;ReadPosRankSum=-0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:13,20:33:99:581,0,363
19    8206748    rs12162233    G    A    581.23    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.916;DB;DP=44;Dels=0.0;FS=1.205;HRun=1;HaplotypeScore=0.8941;MQ=59.48;MQ0=0;MQRankSum=0.141;QD=13.21;ReadPosRankSum=0.916;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:21,23:44:99:611,0,621
19    8207070    rs12162237    G    A    192.85    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=27.55;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:1,6:7:18.25:223,0,18
19    8209926    rs899208    T    C    201.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:235,21,0
19    8209981    rs2008549    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    8211135    rs147761820    C    G    46.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270509    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:76,0,26
19    8315847    rs379983    A    G    5060.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.84;MQ0=0;QD=36.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251363    GT:AD:DP:GQ:PL    1/1:0,140:140:99:5060,385,0
19    8321937    rs1127912    C    T    6769.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=197;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7782;MQ=59.65;MQ0=0;QD=34.36;SNPEFF_AMINO_ACID_CHANGE=H239;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8321833_8321961;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251363    GT:AD:DP:GQ:PL    1/1:0,197:197:99:6769,494,0
19    8322069    rs36249    A    G    1272.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251363    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1306,99,0
19    8322594    rs36250    G    A    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251363    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
19    8326866    rs17160348    C    T    354.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=23.62;SNPEFF_AMINO_ACID_CHANGE=A353V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8326814_8327305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251363    GT:AD:DP:GQ:PL    1/1:0,15:15:30.07:387,30,0
19    8326944    rs17160349    G    A    239.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=23.93;SNPEFF_AMINO_ACID_CHANGE=R379Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8326814_8327305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251363    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:272,21,0
19    8326999    rs1044547    C    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251363    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
19    8367033    rs250510    T    C    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    8369743    rs2927709    G    A    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301458    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
19    8370120    rs2232778    T    C    102.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.14;MQ0=0;QD=20.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301458    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:135,12,0
19    8381163    rs2972570    T    C    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301457    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
19    8381595    rs147161855    CCT    C    533    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=64.2329;IndelType=D;MQ=58.98;MQ0=0;QD=44.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301457    GT:AD:DP:GQ:PL    1/1:1,11:12:36.12:575,36,0
19    8386306    rs2241592    G    A    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
19    8386701    rs2241590    G    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    8389520    rs1019757    C    T    1416.74    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.887;QD=34.55;ReadPosRankSum=-0.887;SNPEFF_AMINO_ACID_CHANGE=L759;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8389514_8389714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:1,40:41:99:1450,105,0
19    8389723    rs2972571    T    A    803.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417088    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:836,63,0
19    8398531    rs2241589    T    C    39.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
19    8398714    rs2009733    A    G    199.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_AMINO_ACID_CHANGE=S83;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8398621_8398962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381056    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:232,18,0
19    8398975    rs2913955    C    T    90.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.01;SNPEFF_AMINO_ACID_CHANGE=A485T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8398794_8399000;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,4:5:9.03:122,9,0
19    8399628    rs710949    A    G    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_AMINO_ACID_CHANGE=S361;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8399384_8400676;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
19    8399709    rs890852    C    A    125.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.84;SNPEFF_AMINO_ACID_CHANGE=V334;SNPEFF_CODON_CHANGE=gtG/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8399384_8400676;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:158,12,0
19    8399799    rs890851    G    A    126.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.11;SNPEFF_AMINO_ACID_CHANGE=A304;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8399384_8400676;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:159,12,0
19    8399849    rs890850    C    A    86.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.64;SNPEFF_AMINO_ACID_CHANGE=D288Y;SNPEFF_CODON_CHANGE=Gac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8399384_8400676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
19    8402645    rs2913958    A    T    541.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330915    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:574,42,0
19    8464445    rs7260496    A    G    89.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328024    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
19    8464653    rs2913970    G    A    182.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=26.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328024    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:216,18,0
19    8465083    rs12979252    G    A    108.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328024    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
19    8467538    .    C    CTTGTTTTTTTCTTT    2737.67    PASS    AC=2;AF=1.00;AN=2;DP=19;FS=0.0;HRun=0;HaplotypeScore=149.81;IndelType=I;MQ=42.61;MQ0=0;QD=144.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB11B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328024    GT:AD:DP:GQ:PL    1/1:5,13:19:45.15:2780,45,0
19    8486633    rs55654865    A    G    109.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215555    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
19    8486884    rs1133893    G    A    1318.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9048;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=A54T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8486673_8486900;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARCH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215555    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1352,102,0
19    8528310    rs8102587    A    G    1593.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.49;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325495    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1627,120,0
19    8530049    rs628532    C    G    779.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325495    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:812,60,0
19    8533504    rs7258281    T    C    80.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325495    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
19    8533925    rs10421511    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325495    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    8536373    rs12973706    A    G    387.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=32.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325495    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:420,33,0
19    8548175    rs1599871    A    C    451.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325495    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:484,42,0
19    8551094    rs2230647    T    C    1373.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=28.61;SNPEFF_AMINO_ACID_CHANGE=P151;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8550487_8551289;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539473    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1406,117,0
19    8551852    rs11669139    A    G    1446.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.5;MQ0=0;QD=31.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255612    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1479,129,0
19    8552167    rs12608524    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255612    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
19    8553457    rs78149642    G    A    32.95    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=4.71;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255612    GT:AD:DP:GQ:PL    0/1:5,2:7:62.94:63,0,147
19    8553630    rs6992    C    T    1507.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_AMINO_ACID_CHANGE=G252;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8553575_8553885;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539473    GT:AD:DP:GQ:PL    1/1:0,46:47:99:1540,120,0
19    8555886    rs2303110    G    C    2971.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.6208;MQ=59.79;MQ0=0;QD=27.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325495    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3004,241,0
19    8563456    rs2910435    C    G    245.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=20.45;SNPEFF_AMINO_ACID_CHANGE=A412;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8563260_8564664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255612    GT:AD:DP:GQ:PL    1/1:0,12:12:21.07:278,21,0
19    8587153    rs147878935    G    A    104.13    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.1;MQ0=0;MQRankSum=0.198;QD=14.88;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305795    GT:AD:DP:GQ:PL    0/1:2,5:7:53.33:134,0,53
19    8642160    rs4542783    T    C    348.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=24.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270328    GT:AD:DP:GQ:PL    1/1:0,14:14:30.08:381,30,0
19    8645786    rs7252299    A    C    278.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=23.22;SNPEFF_AMINO_ACID_CHANGE=H1101Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8645126_8645886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270328    GT:AD:DP:GQ:PL    1/1:0,12:12:24.07:312,24,0
19    8654916    rs3923268    G    A    95.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=15;Dels=0.0;FS=7.549;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-2.266;QD=6.37;ReadPosRankSum=2.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270328    GT:AD:DP:GQ:PL    0/1:10,5:15:99:126,0,333
19    8665676    rs6603092    C    A    235.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.3;MQ0=0;QD=29.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270328    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:269,21,0
19    8669931    rs7255721    G    C    97.20    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.077;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=6.94;ReadPosRankSum=1.157;SNPEFF_AMINO_ACID_CHANGE=T134S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8669897_8670243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270328    GT:AD:DP:GQ:PL    0/1:10,4:14:99:127,0,293
19    8808900    rs10410943    A    G    253.78    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.34;MQ0=0;MQRankSum=-0.325;QD=7.25;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=V51A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8807751_8809172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324436    GT:AD:DP:GQ:PL    0/1:24,11:35:99:284,0,762
19    8808942    rs2340550    A    G    399.84    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.213;DB;DP=37;Dels=0.0;FS=1.32;HRun=4;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-1.576;QD=10.81;ReadPosRankSum=0.111;SNPEFF_AMINO_ACID_CHANGE=F37S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8807751_8809172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324436    GT:AD:DP:GQ:PL    0/1:20,17:37:99:430,0,559
19    8841558    rs28324    T    C    2201.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=H56;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8841316_8842371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR2Z1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324060    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2234,169,0
19    8932092    rs2910347    G    A    383.86    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.607;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=57.48;MQ0=0;MQRankSum=0.218;QD=13.71;ReadPosRankSum=-0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF558;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301475    GT:AD:DP:GQ:PL    0/1:13,15:28:99:414,0,371
19    8932094    rs74176667    T    TG    238.86    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.817;DB;DP=25;FS=0.0;HRun=8;HaplotypeScore=117.4089;IndelType=I;MQ=57.63;MQ0=0;MQRankSum=0.643;QD=9.55;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF558;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301475    GT:AD:DP:GQ:PL    0/1:14,11:25:99:278,0,215
19    8932524    rs12978839    T    C    275.71    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.164;QD=17.23;ReadPosRankSum=1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF558;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301475    GT:AD:DP:GQ:PL    0/1:7,9:16:99:306,0,235
19    8953801    rs2969292    T    C    1449.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=V149;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8953269_8954016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305625    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1483,111,0
19    8953922    rs2972588    C    T    1010.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_AMINO_ACID_CHANGE=R190C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8953269_8954016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305625    GT:AD:DP:GQ:PL    1/1:0,28:28:75.25:1044,75,0
19    8954088    rs17417136    G    A    125.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBD3L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305625    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
19    8961772    rs2972591    A    G    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
19    8961981    rs1035442    C    G    1107.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6609;MQ=52.77;MQ0=0;QD=25.16;SNPEFF_AMINO_ACID_CHANGE=V1107L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8961952_8962031;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:1,42:44:90.28:1140,90,0
19    8962315    rs2910353    C    A    76.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
19    8972034    rs4804371    A    G    82.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
19    8972042    rs12971393    G    A    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    8973757    rs1469079    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    8974237    rs11670820    G    C    460.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:493,36,0
19    8976075    rs1833776    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    8976471    rs3764554    G    A    852.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:886,66,0
19    8976504    rs3764553    G    A    454.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:488,39,0
19    8976713    rs3764552    A    G    775.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:808,63,0
19    8976921    rs11085755    C    T    295.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:329,24,0
19    8982084    rs3752139    C    G    308.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:342,27,0
19    8987133    rs3764555    T    C    782.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:815,63,0
19    8987348    .    A    AAG    1685.95    PASS    AC=2;AF=1.00;AN=2;DP=47;FS=0.0;HRun=0;HaplotypeScore=143.862;IndelType=I;MQ=53.83;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:11,36:47:99:1728,105,0
19    8993018    rs61742668    G    A    910.66    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.3;DB;DP=69;Dels=0.0;FS=3.404;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=13.2;ReadPosRankSum=0.15;SNPEFF_AMINO_ACID_CHANGE=P13914L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8993007_8993042;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:36,33:69:99:941,0,1012
19    8994113    rs2009979    T    C    1500.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.53;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1534,111,0
19    8994285    rs752410    T    A    2302.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1017;MQ=59.65;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2336,175,0
19    8994373    rs873869    A    G    3350.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=59.53;MQ0=0;QD=33.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3351,274,0
19    8995853    rs11672574    T    C    500.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,15:15:45.11:533,45,0
19    8998532    rs57902801    T    C    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
19    8999311    rs11673197    G    A    3471.37    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.481;DB;DP=126;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=91.8533;MQ=51.19;MQ0=0;MQRankSum=5.497;QD=27.55;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:18,108:126:99:3471,111,0
19    8999445    rs112439001    C    T    34.82    HaplotypeScoreFilter13;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=224;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=87.9172;MQ=52.76;MQ0=0;MQRankSum=-6.952;QD=0.16;ReadPosRankSum=-0.083;SNPEFF_AMINO_ACID_CHANGE=S13577N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8999392_8999564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:198,26:224:64.82:65,0,5989
19    8999453    rs11085765    C    T    5006.13    HaplotypeScoreFilter13    AB=0.26;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.556;DB;DP=223;DS;Dels=0.0;FS=5.189;HRun=1;HaplotypeScore=67.3816;MQ=52.72;MQ0=0;MQRankSum=11.264;QD=22.45;ReadPosRankSum=-3.37;SNPEFF_AMINO_ACID_CHANGE=L13574;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8999392_8999564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:58,165:223:99:5006,0,689
19    8999474    .    T    C    45.31    HaplotypeScoreFilter13;QDFilter2    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=2.51;DP=170;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.5964;MQ=53.23;MQ0=0;MQRankSum=-7.379;QD=0.27;ReadPosRankSum=-2.915;SNPEFF_AMINO_ACID_CHANGE=L13567;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_8999392_8999564;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:142,28:170:75.31:75,0,4642
19    8999675    rs11085766    A    C    241.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.782;MQ=58.2;MQ0=0;MQRankSum=0.935;QD=18.54;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:1,12:13:5.39:272,5,0
19    9000064    rs35601193    G    GT    1110.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=1;HaplotypeScore=54.8047;IndelType=I;MQ=60.0;MQ0=0;QD=44.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:1,24:25:72.25:1152,72,0
19    9000326    rs35743385    G    C    1229.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.74;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:1,36:37:96.31:1262,96,0
19    9000757    rs12985749    C    T    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    9001639    rs35744349    T    C    95.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:128,9,0
19    9001822    rs12976111    A    G    1873.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1907,141,0
19    9001833    rs12976122    A    G    1376.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.15;MQ0=0;QD=21.86;SNPEFF_AMINO_ACID_CHANGE=M113T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9001831_9001896;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1410,132,0
19    9001835    rs12985778    G    A    1406.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=21.64;SNPEFF_AMINO_ACID_CHANGE=P112;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9001831_9001896;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380951    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1440,135,0
19    9001986    rs12461757    C    A    806.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=35.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:840,63,0
19    9002113    rs12462672    A    G    2107.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.16;MQ0=0;QD=38.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2140,160,0
19    9002440    rs12971802    C    T    3161.38    PASS    AB=0.22;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.284;DB;DP=127;Dels=0.0;FS=3.369;HRun=0;HaplotypeScore=0.9979;MQ=53.78;MQ0=0;MQRankSum=7.66;QD=24.89;ReadPosRankSum=1.874;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    0/1:28,99:127:80.68:3191,0,81
19    9002454    .    C    T    76.48    QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.801;DP=145;Dels=0.0;FS=16.147;HRun=1;HaplotypeScore=0.0;MQ=54.24;MQ0=0;MQRankSum=-7.691;QD=0.53;ReadPosRankSum=-3.451;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    0/1:115,30:145:99:106,0,4046
19    9002493    rs77972891    T    C    1762.08    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=1.587;DB;DP=250;DS;Dels=0.0;FS=0.539;HRun=0;HaplotypeScore=2.659;MQ=51.21;MQ0=1;MQRankSum=-12.304;QD=7.05;ReadPosRankSum=-1.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    0/1:164,86:250:99:1792,0,5116
19    9002504    rs78327556    T    C    1712.31    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.728;DB;DP=247;DS;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=2.8258;MQ=51.18;MQ0=1;MQRankSum=-12.141;QD=6.93;ReadPosRankSum=2.979;SNPEFF_AMINO_ACID_CHANGE=N13438D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9002501_9002673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:160,86:247:99:1742,0,5120
19    9002519    rs150783178    G    C    1780.39    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=4.04;DB;DP=249;DS;Dels=0.0;FS=8.148;HRun=2;HaplotypeScore=5.7572;MQ=51.26;MQ0=1;MQRankSum=-11.731;QD=7.15;ReadPosRankSum=6.446;SNPEFF_AMINO_ACID_CHANGE=H13433D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9002501_9002673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:163,86:249:99:1810,0,4924
19    9002576    rs80214581    T    C    320.07    QDFilter2    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=2.929;DB;DP=173;DS;Dels=0.0;FS=2.608;HRun=2;HaplotypeScore=4.332;MQ=51.73;MQ0=1;MQRankSum=-9.129;QD=1.85;ReadPosRankSum=-5.961;SNPEFF_AMINO_ACID_CHANGE=K13414E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9002501_9002673;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:121,52:173:99:350,0,3798
19    9003217    rs76366056    GA    G    514.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=29;FS=0.0;HRun=11;HaplotypeScore=110.3711;IndelType=D;MQ=60.7;MQ0=0;MQRankSum=0.069;QD=17.75;ReadPosRankSum=-0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:4,25:29:42.88:557,43,0
19    9003618    rs11085776    C    T    5273.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.84;MQ0=0;QD=35.63;SNPEFF_AMINO_ACID_CHANGE=R13341H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9003566_9003690;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,148:148:99:5274,385,0
19    9003645    rs11085777    G    A    4649.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=59.83;MQ0=0;QD=34.44;SNPEFF_AMINO_ACID_CHANGE=T13332I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9003566_9003690;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4650,349,0
19    9003706    rs11085778    T    G    2875.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2909,223,0
19    9003749    rs11085779    G    T    1854.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441155    GT:AD:DP:GQ:PL    1/1:0,55:56:99:1887,141,0
19    9005041    rs62118260    T    C    493.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=37.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:526,39,0
19    9005719    rs4804375    A    G    1434.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.05;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.72;MQ0=0;QD=35.87;SNPEFF_AMINO_ACID_CHANGE=D13229;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9005559_9005731;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1468,108,0
19    9006463    rs11668219    C    G    1705.65    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=23.5512;MQ=55.91;MQ0=0;QD=30.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,51:56:99:1739,138,0
19    9007630    rs73005873    G    A    297.81    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.01;MQ0=0;MQRankSum=0.286;QD=15.67;ReadPosRankSum=-0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:9,10:19:99:328,0,284
19    9007748    rs11673136    A    G    1227.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1261,96,0
19    9009161    rs12976386    A    T    255.88    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.6;QD=18.28;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:5,9:14:99:286,0,170
19    9009851    rs75371087    C    T    442.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:475,36,0
19    9014405    rs112219070    C    CT    754.49    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.697;DB;DP=40;FS=3.079;HRun=2;HaplotypeScore=140.4431;IndelType=I;MQ=58.44;MQ0=0;MQRankSum=2.73;QD=18.4;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:20,21:40:99:794,0,518
19    9014456    rs12460359    G    A    877.79    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.338;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1434;MQ=55.17;MQ0=0;MQRankSum=0.249;QD=9.86;ReadPosRankSum=0.661;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:50,39:89:99:908,0,1714
19    9014551    rs12459127    T    C    1930.57    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=5.617;DB;DP=199;Dels=0.0;FS=1.156;HRun=1;HaplotypeScore=2.9782;MQ=50.63;MQ0=1;MQRankSum=-1.812;QD=9.7;ReadPosRankSum=2.332;SNPEFF_AMINO_ACID_CHANGE=R12808;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9014532_9014704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:120,79:199:99:1961,0,3531
19    9014569    rs12462963    A    G    1769.33    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=5.147;DB;DP=182;Dels=0.0;FS=1.925;HRun=3;HaplotypeScore=2.2859;MQ=49.69;MQ0=1;MQRankSum=-1.89;QD=9.72;ReadPosRankSum=0.556;SNPEFF_AMINO_ACID_CHANGE=G12802;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9014532_9014704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:113,69:182:99:1799,0,3366
19    9015436    rs34959018    T    TG    1574.01    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=6.234;DB;DP=67;FS=2.77;HRun=1;HaplotypeScore=273.5412;IndelType=I;MQ=60.46;MQ0=0;MQRankSum=0.496;QD=23.49;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:28,38:67:99:1613,0,920
19    9015438    rs34556045    A    C    951.23    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.567;DB;DP=65;Dels=0.0;FS=4.702;HRun=0;HaplotypeScore=1.8857;MQ=60.15;MQ0=0;MQRankSum=1.361;QD=14.63;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:26,38:65:99:981,0,787
19    9017910    rs62118265    A    G    30.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
19    9019429    rs881877    T    C    251    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.471;QD=17.93;ReadPosRankSum=-0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:6,8:14:99:281,0,198
19    9019605    rs12981679    C    G    783.03    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.954;DB;DP=65;Dels=0.0;FS=8.661;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.359;QD=12.05;ReadPosRankSum=-0.183;SNPEFF_AMINO_ACID_CHANGE=S12514T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9019600_9019635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:37,28:65:99:813,0,1135
19    9020153    rs75217292    C    T    1025.25    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.803;DB;DP=81;Dels=0.0;FS=5.347;HRun=1;HaplotypeScore=2.5433;MQ=59.66;MQ0=0;MQRankSum=0.3;QD=12.66;ReadPosRankSum=0.516;SNPEFF_AMINO_ACID_CHANGE=E12448K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9019985_9020157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:44,37:81:99:1055,0,1378
19    9020154    rs11882881    A    G    1000.34    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.3;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.2084;MQ=59.65;MQ0=0;MQRankSum=-0.12;QD=12.66;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=S12447;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9019985_9020157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:41,38:79:99:1030,0,1402
19    9020185    rs78342591    T    C    626.95    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.87;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9311;MQ=59.46;MQ0=0;MQRankSum=-1.241;QD=12.29;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:28,22:51:99:657,0,899
19    9020211    rs11882373    C    T    556.83    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.581;DB;DP=32;Dels=0.0;FS=3.774;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.02;QD=17.4;ReadPosRankSum=1.181;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:14,18:32:99:587,0,407
19    9020626    rs12975129    C    G    238.77    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=18.37;ReadPosRankSum=0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:5,8:13:99:269,0,165
19    9020666    rs11085780    G    T    768    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:801,66,0
19    9021275    rs7246797    G    C    462.07    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=-0.092;QD=16.5;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:13,15:28:99:492,0,452
19    9021328    rs7246933    G    A    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
19    9023950    rs12461488    T    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    9024758    rs1862463    T    C    4526.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;QD=36.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,122:123:99:4527,340,0
19    9024994    rs67631215    C    T    1440.33    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=6.966;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.898;MQ=59.33;MQ0=0;MQRankSum=-0.133;QD=13.85;ReadPosRankSum=-0.263;SNPEFF_AMINO_ACID_CHANGE=E12290K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9024826_9024998;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:56,48:104:99:1470,0,1516
19    9025584    rs77811999    T    G    260.05    PASS    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=55.0;MQ0=0;MQRankSum=-6.336;QD=3.1;ReadPosRankSum=-1.845;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:67,17:84:99:290,0,2005
19    9025604    .    A    G    235.07    PASS    AB=0.817;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.51;MQ0=0;MQRankSum=-6.418;QD=2.53;ReadPosRankSum=2.706;SNPEFF_AMINO_ACID_CHANGE=L12284;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9025591_9025658;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:76,17:93:99:265,0,2404
19    9025826    rs7256118    T    A    179.35    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=16.3;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:5,6:11:99:209,0,169
19    9027313    rs62118276    A    G    562.66    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=1.602;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=22.51;ReadPosRankSum=-1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:8,17:25:99:593,0,256
19    9028432    rs10411029    C    T    1812.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1845,141,0
19    9033161    .    G    C    99.02    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.876;QD=9.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:6,4:10:99:129,0,166
19    9038597    rs12980941    C    T    177.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.84;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.78;QD=12.68;ReadPosRankSum=2.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:7,7:14:99:208,0,204
19    9043347    rs10425275    G    A    76.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.15;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:107,0,27
19    9045518    rs12984694    T    G    437.07    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.076;DB;DP=35;Dels=0.0;FS=2.351;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.579;QD=12.49;ReadPosRankSum=-1.772;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:19,16:35:99:467,0,680
19    9047267    rs10410169    C    T    2051.60    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.311;DB;DP=124;Dels=0.0;FS=5.694;HRun=0;HaplotypeScore=0.9999;MQ=59.66;MQ0=0;MQRankSum=1.252;QD=16.55;ReadPosRankSum=0.2;SNPEFF_AMINO_ACID_CHANGE=G11455D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:61,63:124:99:2082,0,1972
19    9047305    rs10415818    G    A    2139.36    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=140;Dels=0.0;FS=4.057;HRun=0;HaplotypeScore=0.9997;MQ=59.7;MQ0=0;MQRankSum=0.285;QD=15.28;ReadPosRankSum=0.636;SNPEFF_AMINO_ACID_CHANGE=H11442;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:64,76:140:99:2169,0,2043
19    9048035    rs10417358    G    C    2354.63    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.125;DB;DP=140;Dels=0.0;FS=5.321;HRun=1;HaplotypeScore=3.6004;MQ=60.0;MQ0=0;MQRankSum=-1.601;QD=16.82;ReadPosRankSum=1.129;SNPEFF_AMINO_ACID_CHANGE=A11199G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:60,79:140:99:2385,0,1850
19    9048170    rs10417600    G    A    2183.34    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=161;Dels=0.0;FS=4.711;HRun=1;HaplotypeScore=2.6191;MQ=59.43;MQ0=0;MQRankSum=-1.723;QD=13.56;ReadPosRankSum=-0.778;SNPEFF_AMINO_ACID_CHANGE=S11154F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:86,75:161:99:2213,0,2819
19    9048342    rs10854118    C    T    2278.87    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.591;DB;DP=170;Dels=0.0;FS=0.571;HRun=1;HaplotypeScore=2.3249;MQ=59.59;MQ0=0;MQRankSum=0.851;QD=13.41;ReadPosRankSum=1.003;SNPEFF_AMINO_ACID_CHANGE=V11097M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:90,79:170:99:2309,0,2928
19    9048895    rs2012761    A    C    2525.75    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.798;DB;DP=181;Dels=0.0;FS=2.621;HRun=1;HaplotypeScore=1.79;MQ=59.87;MQ0=0;MQRankSum=0.83;QD=13.95;ReadPosRankSum=-0.14;SNPEFF_AMINO_ACID_CHANGE=S10912R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:94,86:181:99:2556,0,2814
19    9049149    rs12461007    G    A    2973.15    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.77;DB;DP=224;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7791;MQ=59.92;MQ0=0;MQRankSum=0.674;QD=13.27;ReadPosRankSum=0.593;SNPEFF_AMINO_ACID_CHANGE=P10828S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:115,109:224:99:3003,0,3533
19    9049339    rs11883220    C    G    3388.12    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=4.34;DB;DP=190;Dels=0.0;FS=5.149;HRun=1;HaplotypeScore=3.3536;MQ=60.0;MQ0=0;MQRankSum=-0.554;QD=17.83;ReadPosRankSum=0.493;SNPEFF_AMINO_ACID_CHANGE=T10764;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:86,104:190:99:3388,0,2676
19    9049396    rs10425044    C    G    3303.71    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.409;DB;DP=223;Dels=0.0;FS=1.671;HRun=0;HaplotypeScore=5.4908;MQ=59.79;MQ0=0;MQRankSum=-0.842;QD=14.81;ReadPosRankSum=-0.245;SNPEFF_AMINO_ACID_CHANGE=G10745;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9045564_9050243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:116,105:223:99:3304,0,3633
19    9054251    .    C    G    37.28    QDFilter2    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.649;DP=61;Dels=0.0;FS=49.285;HRun=2;HaplotypeScore=0.9998;MQ=44.4;MQ0=0;MQRankSum=-3.95;QD=0.61;ReadPosRankSum=-1.023;SNPEFF_AMINO_ACID_CHANGE=S10457;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9054235_9054348;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:32,29:61:67.27:67,0,720
19    9054544    rs7250646    C    T    53.05    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.633;QD=5.31;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:6,4:10:83.05:83,0,212
19    9056930    rs918535    T    G    1157.76    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.959;DB;DP=72;Dels=0.0;FS=4.766;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.276;QD=16.08;ReadPosRankSum=-0.947;SNPEFF_AMINO_ACID_CHANGE=T10172;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:28,44:72:99:1188,0,923
19    9056941    rs10410136    A    G    1360.49    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=0.273;DB;DP=79;Dels=0.0;FS=4.491;HRun=0;HaplotypeScore=0.9159;MQ=58.82;MQ0=0;MQRankSum=-0.482;QD=17.22;ReadPosRankSum=1.257;SNPEFF_AMINO_ACID_CHANGE=F10169L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:33,46:79:99:1390,0,1004
19    9057408    rs1423051    A    G    5616.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=59.58;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=L10013P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,165:165:99:5617,421,0
19    9057687    rs1895364    A    G    6779.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=197;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7537;MQ=59.53;MQ0=0;QD=34.42;SNPEFF_AMINO_ACID_CHANGE=I9920T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,197:197:99:6780,512,0
19    9057704    rs12984130    G    T    2139.20    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.265;DB;DP=188;Dels=0.0;FS=2.611;HRun=1;HaplotypeScore=2.7876;MQ=59.51;MQ0=0;MQRankSum=-1.71;QD=11.38;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=I9914;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:111,77:188:99:2169,0,3652
19    9057750    rs12982113    T    A    1668.33    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=5.158;DB;DP=155;Dels=0.0;FS=7.091;HRun=3;HaplotypeScore=0.9989;MQ=59.73;MQ0=0;MQRankSum=-0.388;QD=10.76;ReadPosRankSum=-0.201;SNPEFF_AMINO_ACID_CHANGE=Y9899F;SNPEFF_CODON_CHANGE=tAt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:90,65:155:99:1698,0,2927
19    9057896    rs12984471    G    C    2015.37    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=4.045;DB;DP=147;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.99;MQ=59.56;MQ0=0;MQRankSum=1.125;QD=13.71;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=D9850E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:77,69:147:99:2045,0,2284
19    9058907    rs1833777    G    C    2283.26    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=5.439;DB;DP=138;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=3.6104;MQ=59.67;MQ0=0;MQRankSum=1.201;QD=16.55;ReadPosRankSum=1.925;SNPEFF_AMINO_ACID_CHANGE=H9513Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:66,72:138:99:2313,0,1868
19    9059159    rs12462651    T    G    1844.14    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.233;DB;DP=164;Dels=0.0;FS=5.692;HRun=0;HaplotypeScore=3.3596;MQ=59.6;MQ0=0;MQRankSum=-0.919;QD=11.24;ReadPosRankSum=0.369;SNPEFF_AMINO_ACID_CHANGE=K9429N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:90,74:164:99:1874,0,2857
19    9059181    rs12459532    G    A    2130.83    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.425;DB;DP=165;Dels=0.0;FS=3.705;HRun=0;HaplotypeScore=3.9687;MQ=59.33;MQ0=0;MQRankSum=-0.846;QD=12.84;ReadPosRankSum=-1.4;SNPEFF_AMINO_ACID_CHANGE=P9422L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:90,75:165:99:2161,0,2761
19    9059232    rs12710265    T    C    2630.01    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.519;DB;DP=164;Dels=0.0;FS=0.596;HRun=1;HaplotypeScore=0.6651;MQ=59.46;MQ0=0;MQRankSum=1.181;QD=16.04;ReadPosRankSum=-0.939;SNPEFF_AMINO_ACID_CHANGE=Q9405R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:71,93:164:99:2660,0,2226
19    9059307    rs12461695    C    T    2139.83    PASS    AB=0.503;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.359;DB;DP=151;Dels=0.0;FS=2.957;HRun=0;HaplotypeScore=2.8715;MQ=59.66;MQ0=0;MQRankSum=-0.017;QD=14.17;ReadPosRankSum=-0.523;SNPEFF_AMINO_ACID_CHANGE=G9380D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:76,75:151:99:2170,0,2286
19    9059808    rs7508222    A    G    5211.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5873;MQ=59.5;MQ0=0;QD=37.5;SNPEFF_AMINO_ACID_CHANGE=I9213T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,139:139:99:5212,394,0
19    9060059    rs12977368    A    C    1410.58    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=108;Dels=0.0;FS=11.33;HRun=1;HaplotypeScore=2.4056;MQ=59.18;MQ0=0;MQRankSum=1.655;QD=13.06;ReadPosRankSum=0.592;SNPEFF_AMINO_ACID_CHANGE=D9129E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:56,51:108:99:1441,0,1835
19    9060125    rs12972088    G    A    1387.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.233;DB;DP=120;Dels=0.0;FS=4.829;HRun=1;HaplotypeScore=3.3009;MQ=59.38;MQ0=0;MQRankSum=1.883;QD=11.57;ReadPosRankSum=0.237;SNPEFF_AMINO_ACID_CHANGE=H9107;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:60,60:120:99:1418,0,1808
19    9060541    rs11882256    C    T    2131.13    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.79;DB;DP=163;Dels=0.0;FS=0.584;HRun=1;HaplotypeScore=3.6645;MQ=59.46;MQ0=0;MQRankSum=-2.493;QD=13.07;ReadPosRankSum=-1.251;SNPEFF_AMINO_ACID_CHANGE=V8969M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:86,77:163:99:2161,0,2818
19    9060605    rs2194168    G    A    5474.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=S8947;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,161:162:99:5475,409,0
19    9060812    rs1820099    T    C    4082.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6648;MQ=59.61;MQ0=0;QD=34.31;SNPEFF_AMINO_ACID_CHANGE=S8878;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,119:119:99:4083,319,0
19    9060915    rs59168469    C    T    1975.91    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=130;Dels=0.0;FS=14.732;HRun=0;HaplotypeScore=1.9772;MQ=59.36;MQ0=0;MQRankSum=0.186;QD=15.2;ReadPosRankSum=-0.033;SNPEFF_AMINO_ACID_CHANGE=R8844H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:60,70:130:99:2006,0,1828
19    9061559    rs1423052    C    G    2385.27    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=3.845;DB;DP=155;Dels=0.0;FS=0.607;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.655;QD=15.39;ReadPosRankSum=2.637;SNPEFF_AMINO_ACID_CHANGE=T8629;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:76,79:155:99:2415,0,2265
19    9062415    rs12978757    T    G    4359.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.69;MQ0=0;QD=35.73;SNPEFF_AMINO_ACID_CHANGE=D8344A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4360,325,0
19    9062544    rs2547063    T    G    4238.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=59.64;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=N8301T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4238,340,0
19    9063515    .    T    G    169.46    FSFilter60;QDFilter2    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.207;DP=145;Dels=0.0;FS=202.262;HRun=2;HaplotypeScore=7.3924;MQ=56.3;MQ0=0;MQRankSum=-2.086;QD=1.17;ReadPosRankSum=-0.459;SNPEFF_AMINO_ACID_CHANGE=S7977;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:98,47:145:99:199,0,3297
19    9065203    rs62118307    T    C    1176.83    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.757;DB;DP=89;Dels=0.0;FS=6.375;HRun=1;HaplotypeScore=2.4875;MQ=59.48;MQ0=0;MQRankSum=-2.111;QD=13.22;ReadPosRankSum=0.934;SNPEFF_AMINO_ACID_CHANGE=S7415G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:48,41:89:99:1207,0,1623
19    9065510    rs1867692    G    A    1328.88    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.423;DB;DP=92;Dels=0.0;FS=7.177;HRun=2;HaplotypeScore=0.9916;MQ=59.55;MQ0=0;MQRankSum=1.809;QD=14.44;ReadPosRankSum=1.454;SNPEFF_AMINO_ACID_CHANGE=F7312;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:44,47:92:99:1359,0,1392
19    9066259    rs17000770    T    C    2867.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.85;SNPEFF_AMINO_ACID_CHANGE=T7063A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2901,217,0
19    9068530    rs7250080    C    T    2511.48    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.392;DB;DP=144;Dels=0.0;FS=2.154;HRun=0;HaplotypeScore=1.933;MQ=59.68;MQ0=0;MQRankSum=0.437;QD=17.44;ReadPosRankSum=0.021;SNPEFF_AMINO_ACID_CHANGE=V6306M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:62,82:144:99:2541,0,1865
19    9070079    rs1559170    C    G    914.32    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=3.355;DB;DP=125;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9992;MQ=59.26;MQ0=0;MQRankSum=0.479;QD=7.31;ReadPosRankSum=-0.165;SNPEFF_AMINO_ACID_CHANGE=T5789;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:90,35:125:99:944,0,2803
19    9070194    rs1344572    A    G    5262.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.7854;MQ=59.27;MQ0=0;QD=35.8;SNPEFF_AMINO_ACID_CHANGE=I5751T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,147:147:99:5262,403,0
19    9070225    rs1559172    G    C    5090.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.3;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=H5741D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,146:146:99:5090,379,0
19    9070402    rs12150888    G    T    1216.49    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.168;DB;DP=95;Dels=0.0;FS=3.901;HRun=0;HaplotypeScore=2.4007;MQ=59.51;MQ0=0;MQRankSum=1.251;QD=12.81;ReadPosRankSum=0.544;SNPEFF_AMINO_ACID_CHANGE=P5682T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:52,43:95:99:1246,0,1704
19    9070837    rs2547067    G    A    6182.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.53;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=P5537S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,187:187:99:6182,475,0
19    9071596    rs146343030    G    T    1211.63    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.745;DB;DP=65;Dels=0.0;FS=0.95;HRun=0;HaplotypeScore=0.9332;MQ=59.65;MQ0=0;MQRankSum=0.007;QD=18.64;ReadPosRankSum=1.223;SNPEFF_AMINO_ACID_CHANGE=L5284I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:27,38:65:99:1242,0,867
19    9071763    rs10422567    T    A    3943.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5572;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=N5228I;SNPEFF_CODON_CHANGE=aAc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3943,292,0
19    9072296    rs7254970    G    T    1063.06    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.192;DB;DP=87;Dels=0.0;FS=7.325;HRun=1;HaplotypeScore=1.9367;MQ=59.2;MQ0=0;MQRankSum=-0.916;QD=12.22;ReadPosRankSum=0.297;SNPEFF_AMINO_ACID_CHANGE=T5050;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:50,37:87:99:1093,0,1607
19    9074265    rs10406209    G    A    2282.54    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=1.305;DB;DP=168;Dels=0.0;FS=0.575;HRun=1;HaplotypeScore=2.6365;MQ=59.45;MQ0=0;MQRankSum=-0.322;QD=13.59;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=T4394I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:90,77:168:99:2313,0,2712
19    9075346    rs2591592    T    A    1703.35    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=106;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.129;QD=16.07;ReadPosRankSum=0.831;SNPEFF_AMINO_ACID_CHANGE=I4034F;SNPEFF_CODON_CHANGE=Att/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:48,58:106:99:1733,0,1516
19    9075565    rs17000836    C    T    915.96    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=54;Dels=0.0;FS=17.027;HRun=2;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.976;QD=16.96;ReadPosRankSum=0.94;SNPEFF_AMINO_ACID_CHANGE=E3961K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:20,34:54:99:946,0,648
19    9075737    rs2547071    T    C    1258.55    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=0.321;DB;DP=85;Dels=0.0;FS=2.858;HRun=0;HaplotypeScore=1.9827;MQ=60.0;MQ0=0;MQRankSum=-0.453;QD=14.81;ReadPosRankSum=-0.251;SNPEFF_AMINO_ACID_CHANGE=V3903;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9056173_9077865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:41,44:85:99:1289,0,1262
19    9080343    .    GAAAGAAAAGAAAAGAAAAGAAAAGA    G    987.36    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.754;DP=30;FS=0.0;HRun=0;HaplotypeScore=718.9696;IndelType=D;MQ=35.44;MQ0=0;MQRankSum=0.352;QD=29.92;ReadPosRankSum=1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:27,6:30:99:1026,0,1853
19    9080345    rs4039731    AAG    A    80.30    PASS    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=4.025;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=412.0271;IndelType=D;MQ=35.44;MQ0=0;MQRankSum=-1.254;QD=2.43;ReadPosRankSum=0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:28,5:30:99:119,0,876
19    9080367    .    GA    G    42.70    QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=3.274;DP=45;FS=2.37;HRun=4;HaplotypeScore=492.8159;IndelType=D;MQ=42.89;MQ0=0;MQRankSum=0.344;QD=0.89;ReadPosRankSum=-0.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:41,7:45:81.73:82,0,1010
19    9080462    rs2547065    C    G    5088.12    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.773;DB;DP=149;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=56.75;MQ0=0;MQRankSum=0.503;QD=34.15;ReadPosRankSum=-1.278;SNPEFF_AMINO_ACID_CHANGE=S3190T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9080451_9080555;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:2,147:149:99:5088,321,0
19    9082514    rs17000871    C    A    2725.51    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.747;DB;DP=170;Dels=0.0;FS=1.212;HRun=2;HaplotypeScore=0.9916;MQ=59.73;MQ0=0;MQRankSum=0.0;QD=16.03;ReadPosRankSum=-0.686;SNPEFF_AMINO_ACID_CHANGE=A3101S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:80,89:170:99:2756,0,2417
19    9083143    rs7245949    G    A    1420.66    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.768;DB;DP=107;Dels=0.0;FS=1.669;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=1.705;QD=13.28;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=T2891I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:57,50:107:99:1451,0,1823
19    9083174    rs7245960    G    A    1463.19    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.76;DB;DP=96;Dels=0.0;FS=1.791;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-1.157;QD=15.24;ReadPosRankSum=0.135;SNPEFF_AMINO_ACID_CHANGE=P2881S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:42,54:96:99:1493,0,1374
19    9084183    rs1609460    G    A    1463.15    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.459;DB;DP=94;Dels=0.0;FS=5.265;HRun=0;HaplotypeScore=1.4942;MQ=58.06;MQ0=0;MQRankSum=0.035;QD=15.57;ReadPosRankSum=-0.481;SNPEFF_AMINO_ACID_CHANGE=P2544;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:44,50:94:99:1493,0,1373
19    9084216    rs1609459    T    C    904.74    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.027;DB;DP=80;Dels=0.0;FS=0.967;HRun=0;HaplotypeScore=4.3152;MQ=57.47;MQ0=0;MQRankSum=-0.234;QD=11.31;ReadPosRankSum=0.787;SNPEFF_AMINO_ACID_CHANGE=A2533;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:41,38:80:99:935,0,1232
19    9084299    rs1609458    T    C    1563.04    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=4.801;DB;DP=123;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4105;MQ=59.25;MQ0=0;MQRankSum=-0.808;QD=12.71;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=T2506A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:67,56:123:99:1593,0,2042
19    9086123    rs10402812    A    C    1614.52    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=2.028;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6989;MQ=60.0;MQ0=0;MQRankSum=1.176;QD=15.23;ReadPosRankSum=-1.182;SNPEFF_AMINO_ACID_CHANGE=Y1898D;SNPEFF_CODON_CHANGE=Tac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:52,53:106:99:1645,0,1711
19    9087615    rs1596798    T    A    5925.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=189;Dels=0.01;FS=0.0;HRun=2;HaplotypeScore=12.4525;MQ=59.39;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=K1400N;SNPEFF_CODON_CHANGE=aaA/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:0,188:189:99:5926,487,0
19    9088017    rs1596797    T    G    8106.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=248;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4787;MQ=59.46;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=K1266N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    1/1:1,247:248:99:8106,632,0
19    9088722    rs17000948    G    A    1979.94    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.749;DB;DP=158;Dels=0.0;FS=4.894;HRun=1;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=-0.38;QD=12.53;ReadPosRankSum=-0.619;SNPEFF_AMINO_ACID_CHANGE=G1031;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:83,74:158:99:2010,0,2642
19    9090531    rs12976721    T    C    1657.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.665;DB;DP=128;Dels=0.0;FS=0.684;HRun=0;HaplotypeScore=1.6208;MQ=59.46;MQ0=0;MQRankSum=0.734;QD=12.95;ReadPosRankSum=1.097;SNPEFF_AMINO_ACID_CHANGE=E428;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9082340_9092018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MUC16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397910    GT:AD:DP:GQ:PL    0/1:70,56:128:99:1687,0,2399
19    9204307    rs4804097    A    G    1581.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_AMINO_ACID_CHANGE=P129;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9203921_9204862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1M1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429566    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1615,129,0
19    9213026    rs4804400    T    C    516.40    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DB;DP=57;Dels=0.0;FS=1.05;HRun=2;HaplotypeScore=0.9789;MQ=59.19;MQ0=0;MQRankSum=0.224;QD=9.06;ReadPosRankSum=-0.555;SNPEFF_AMINO_ACID_CHANGE=K319;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9212945_9213982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305456    GT:AD:DP:GQ:PL    0/1:32,24:57:99:546,0,1097
19    9213079    rs4804401    A    C    705.54    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.947;DB;DP=73;Dels=0.0;FS=0.954;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.331;QD=9.66;ReadPosRankSum=-0.79;SNPEFF_AMINO_ACID_CHANGE=F302V;SNPEFF_CODON_CHANGE=Ttc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9212945_9213982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305456    GT:AD:DP:GQ:PL    0/1:43,30:73:99:736,0,1520
19    9213132    rs12610094    A    G    764.92    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.175;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.3;MQ0=0;MQRankSum=1.726;QD=11.59;ReadPosRankSum=0.243;SNPEFF_AMINO_ACID_CHANGE=V284A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9212945_9213982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305456    GT:AD:DP:GQ:PL    0/1:40,26:66:99:795,0,1278
19    9225387    rs34333263    G    GA    191.54    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=2.256;DB;DP=32;FS=0.0;HRun=16;HaplotypeScore=444.0009;IndelType=I;MQ=46.2;MQ0=0;MQRankSum=-0.979;QD=5.99;ReadPosRankSum=-1.064;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541538    GT:AD:DP:GQ:PL    0/1:19,7:32:6.61:230,0,7
19    9225685    rs2195951    T    C    1009.43    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.373;DB;DP=78;Dels=0.0;FS=1.904;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.781;QD=12.94;ReadPosRankSum=1.315;SNPEFF_AMINO_ACID_CHANGE=Y252C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9225524_9226439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293614    GT:AD:DP:GQ:PL    0/1:44,34:78:99:1039,0,1424
19    9226017    rs2217657    C    G    2110.96    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.163;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9997;MQ=59.7;MQ0=0;MQRankSum=-0.546;QD=27.42;ReadPosRankSum=1.4;SNPEFF_AMINO_ACID_CHANGE=W141C;SNPEFF_CODON_CHANGE=tgG/tgC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9225524_9226439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293614    GT:AD:DP:GQ:PL    1/1:1,75:77:99:2144,138,0
19    9226192    rs6511874    A    G    2089.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.112;DB;DP=165;Dels=0.0;FS=1.23;HRun=0;HaplotypeScore=1.9367;MQ=59.58;MQ0=0;MQRankSum=-0.232;QD=12.66;ReadPosRankSum=0.345;SNPEFF_AMINO_ACID_CHANGE=V83A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9225524_9226439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293614    GT:AD:DP:GQ:PL    0/1:90,75:165:99:2119,0,2906
19    9226540    rs36095111    A    G    308.17    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.021;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.655;QD=14.67;ReadPosRankSum=1.303;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293614    GT:AD:DP:GQ:PL    0/1:11,10:21:99:338,0,383
19    9236698    rs111867493    G    GATGGT    1550.78    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.067;DB;DP=46;FS=5.097;HRun=0;HaplotypeScore=186.2328;IndelType=I;MQ=56.36;MQ0=0;MQRankSum=-1.551;QD=33.71;ReadPosRankSum=0.287;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_9236688_9237626;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000305444    GT:AD:DP:GQ:PL    0/1:28,18:46:99:1590,0,1438
19    9236886    rs10424352    A    G    1004.21    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.078;DB;DP=83;Dels=0.0;FS=0.875;HRun=0;HaplotypeScore=0.9734;MQ=58.65;MQ0=0;MQRankSum=-0.237;QD=12.1;ReadPosRankSum=0.023;SNPEFF_AMINO_ACID_CHANGE=V247;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9236688_9237626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305444    GT:AD:DP:GQ:PL    0/1:44,39:83:99:1034,0,1444
19    9237435    rs10407484    A    G    2106.09    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.52;DB;DP=140;Dels=0.0;FS=2.167;HRun=1;HaplotypeScore=0.9916;MQ=59.4;MQ0=0;MQRankSum=-0.673;QD=15.04;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=S64;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9236688_9237626;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305444    GT:AD:DP:GQ:PL    0/1:68,72:140:99:2136,0,2012
19    9237542    rs10414255    T    C    1207.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.996;DB;DP=102;Dels=0.0;FS=3.045;HRun=0;HaplotypeScore=0.8667;MQ=59.32;MQ0=0;MQRankSum=-2.605;QD=11.84;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=M29V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9236688_9237626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7G3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305444    GT:AD:DP:GQ:PL    0/1:51,51:102:99:1237,0,1612
19    9296664    rs56246934    T    C    3173.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5873;MQ=59.77;MQ0=0;QD=31.42;SNPEFF_AMINO_ACID_CHANGE=V69;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9296279_9299493;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7D2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344248    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3207,253,0
19    9346427    rs1968136    T    C    3460.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=55.71;MQ0=1;QD=31.17;SNPEFF_AMINO_ACID_CHANGE=M98T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9346135_9346812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006271.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344049    GT:AD:DP:GQ:PL    1/1:1,110:111:99:3460,274,0
19    9346599    rs1985937    C    G    2769.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.42;MQ0=3;QD=31.12;SNPEFF_AMINO_ACID_CHANGE=L155;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9346135_9346812;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC006271.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344049    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2802,220,0
19    9449149    rs8110197    A    G    856.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446085    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:890,66,0
19    9449337    rs8110584    G    A    581.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446085    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:614,48,0
19    9450185    rs4442926    A    G    280.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446085    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:313,24,0
19    9489132    rs2304110    C    T    240.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343499    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:274,21,0
19    9490358    rs12461520    C    T    93.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343499    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
19    9490428    rs10411115    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343499    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    9490814    rs2217652    C    T    1164.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;QD=35.3;SNPEFF_AMINO_ACID_CHANGE=T112M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9490733_9490815;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343499    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1198,87,0
19    9492141    rs3826783    C    T    3804.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5027;MQ=59.58;MQ0=0;QD=34.27;SNPEFF_AMINO_ACID_CHANGE=I218;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9491824_9493291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343499    GT:AD:DP:GQ:PL    1/1:0,111:111:99:3804,277,0
19    9492370    rs2230752    A    T    5242.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9713;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=I295F;SNPEFF_CODON_CHANGE=Att/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9491824_9493291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343499    GT:AD:DP:GQ:PL    1/1:0,160:160:99:5243,397,0
19    9524185    rs2241356    A    G    720.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=30.04;SNPEFF_AMINO_ACID_CHANGE=A472;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9523272_9525396;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF266;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361151    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:754,60,0
19    9528265    rs11667878    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF266;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361151    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    9528277    rs11673364    C    A    110.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF266;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361151    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
19    9580866    rs7257399    C    T    200.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF560;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301480    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:234,18,0
19    9581467    rs9305087    A    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF560;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301480    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    9582092    rs67697443    TAAAA    T    780.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=9;HaplotypeScore=142.9924;IndelType=D;MQ=52.29;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF560;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301480    GT:AD:DP:GQ:PL    1/1:11,13:24:51.05:823,51,0
19    9582164    rs5827059    G    GA    260.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=6;HaplotypeScore=43.738;IndelType=I;MQ=60.0;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF560;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301480    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:302,24,0
19    9646739    rs888872    C    G    284.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF426;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253115    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:317,24,0
19    9964823    rs59948834    A    G    232.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247970    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:266,24,0
19    9968139    rs11556087    G    A    499.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_AMINO_ACID_CHANGE=T127M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9967939_9968158;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264833    GT:AD:DP:GQ:PL    1/1:0,17:17:39.11:533,39,0
19    9968434    rs2303100    C    T    802.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_AMINO_ACID_CHANGE=R106Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_9968391_9968537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLFM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264833    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:835,63,0
19    10070954    rs889129    T    A    102.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.922;QD=12.87;ReadPosRankSum=-0.421;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,126
19    10071063    rs10406152    T    C    325.80    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=28;Dels=0.0;FS=9.04;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.0;QD=11.64;ReadPosRankSum=-1.552;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:17,11:28:99:356,0,526
19    10071347    rs2277969    C    T    1172.22    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.745;DB;DP=72;Dels=0.0;FS=1.016;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.017;QD=16.28;ReadPosRankSum=-0.221;SNPEFF_AMINO_ACID_CHANGE=V1691I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10071327_10071566;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1202,0,851
19    10071634    rs918542    T    C    121.12    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;Dels=0.0;FS=3.358;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=9.32;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:7,6:13:99:151,0,242
19    10071669    rs2277968    C    T    147.58    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=21.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:1,6:7:21.95:178,0,22
19    10077158    rs3745582    C    A    114.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=12.7;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461214    GT:AD:DP:GQ:PL    0/1:4,5:9:99:144,0,108
19    10078505    rs35354203    A    G    457.04    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.85;DB;DP=35;Dels=0.0;FS=5.34;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.217;QD=13.06;ReadPosRankSum=0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:20,15:35:99:487,0,708
19    10078589    rs3815748    T    C    443.14    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=51;Dels=0.0;FS=1.117;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=8.69;ReadPosRankSum=1.426;SNPEFF_AMINO_ACID_CHANGE=K1465;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10078580_10078615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:30,21:51:99:473,0,990
19    10078802    rs2287818    C    T    66.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=7.4;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:5,4:9:96.58:97,0,188
19    10079013    rs3815747    G    C    803.35    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=3.414;DB;DP=61;Dels=0.0;FS=5.241;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.249;QD=13.17;ReadPosRankSum=1.013;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:31,30:61:99:833,0,795
19    10080140    rs2277966    C    G    269.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.639;DB;DP=19;Dels=0.0;FS=4.634;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.609;QD=14.17;ReadPosRankSum=0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:6,12:19:99:299,0,199
19    10080619    rs77789510    A    AG    793.69    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.25;DB;DP=58;FS=1.6;HRun=6;HaplotypeScore=184.3607;IndelType=I;MQ=58.68;MQ0=0;MQRankSum=1.513;QD=13.68;ReadPosRankSum=-0.771;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:30,28:58:99:833,0,557
19    10080672    rs58525359    C    T    400.08    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.217;QD=17.39;ReadPosRankSum=0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:10,13:23:99:430,0,299
19    10081276    rs1895371    C    G    39.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.52;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:3,3:6:69.10:69,0,102
19    10084292    rs2287813    C    G    440.22    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.906;DB;DP=49;Dels=0.0;FS=4.694;HRun=1;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=-1.175;QD=8.98;ReadPosRankSum=-0.582;SNPEFF_AMINO_ACID_CHANGE=R1207P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10084246_10084299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:33,15:49:99:470,0,1010
19    10084551    rs2287811    T    G    1001.81    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.963;DB;DP=86;Dels=0.0;FS=1.732;HRun=2;HaplotypeScore=0.6651;MQ=59.3;MQ0=0;MQRankSum=-0.2;QD=11.65;ReadPosRankSum=0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1032,0,1407
19    10085196    rs34006676    T    C    38.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.66;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:2,2:4:56.30:69,0,56
19    10085233    rs36094530    A    G    34.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:2,2:4:64.74:65,0,70
19    10087200    rs2287810    C    T    78.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.73;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:2,3:5:60.62:109,0,61
19    10088271    rs2161468    C    G    199.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.036;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.748;MQ=59.11;MQ0=0;MQRankSum=-0.32;QD=9.5;ReadPosRankSum=-2.239;SNPEFF_AMINO_ACID_CHANGE=R1042P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10088270_10088377;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:12,9:21:99:229,0,341
19    10089262    rs12610207    G    A    332.50    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.402;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.669;QD=15.11;ReadPosRankSum=-1.202;SNPEFF_AMINO_ACID_CHANGE=P1002;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10089250_10089303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:9,13:22:99:362,0,222
19    10089797    rs3214452    C    CA    476.70    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.062;DB;DP=25;FS=4.669;HRun=1;HaplotypeScore=91.6986;IndelType=I;MQ=59.51;MQ0=0;MQRankSum=-1.333;QD=19.07;ReadPosRankSum=-0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:10,15:25:99:516,0,321
19    10090467    rs146403339    GAA    G    324.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.167;DB;DP=42;FS=1.336;HRun=14;HaplotypeScore=195.7836;IndelType=D;MQ=59.09;MQ0=0;MQRankSum=1.661;QD=7.73;ReadPosRankSum=0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:20,19:42:99:364,0,582
19    10090649    rs11879687    A    G    202.25    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.336;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.134;QD=9.19;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:13,9:22:99:232,0,393
19    10096686    rs1862473    G    A    216.40    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.276;QD=14.43;ReadPosRankSum=-0.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:7,8:15:99:246,0,243
19    10112058    rs8108105    A    C    104.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.58;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,166
19    10112346    rs2287803    T    C    2710.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.43;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=R322G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10112200_10112346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2744,211,0
19    10114033    rs749261    C    G    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    10114252    rs61742765    C    G    511.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.555;DB;DP=55;Dels=0.0;FS=2.363;HRun=2;HaplotypeScore=2.7853;MQ=59.16;MQ0=0;MQRankSum=-0.043;QD=9.3;ReadPosRankSum=-0.696;SNPEFF_AMINO_ACID_CHANGE=A280P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10114241_10114390;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:33,22:55:99:541,0,906
19    10114740    rs62104337    T    A    598.81    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.584;DB;DP=52;Dels=0.0;FS=4.125;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-2.115;QD=11.52;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=N226Y;SNPEFF_CODON_CHANGE=Aac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10114717_10114821;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:31,21:52:99:629,0,874
19    10116076    rs11085529    G    C    72.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:104,9,0
19    10116375    rs2303099    G    T    608.38    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=29;Dels=0.0;FS=13.202;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.401;QD=20.98;ReadPosRankSum=0.071;SNPEFF_AMINO_ACID_CHANGE=A151;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10116234_10116390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:9,20:29:99:638,0,210
19    10116703    rs11085530    A    G    297.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.525;QD=13.52;ReadPosRankSum=-0.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL5A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264828    GT:AD:DP:GQ:PL    0/1:11,11:22:99:327,0,353
19    10129262    rs1644733    T    C    157.46    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.608;DB;DP=20;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.836;QD=7.87;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171214    GT:AD:DP:GQ:PL    0/1:11,9:20:99:187,0,378
19    10131693    rs889128    T    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171214    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    10131866    rs74178232    A    AT    158.06    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=54.5297;IndelType=I;MQ=63.37;MQ0=0;MQRankSum=0.751;QD=17.56;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171214    GT:AD:DP:GQ:PL    0/1:4,5:9:13.92:197,0,14
19    10131999    rs1644731    T    C    618.75    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=49;Dels=0.0;FS=2.552;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.074;QD=12.63;ReadPosRankSum=0.16;SNPEFF_AMINO_ACID_CHANGE=M202T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10131931_10132114;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000171214    GT:AD:DP:GQ:PL    0/1:25,24:49:99:649,0,748
19    10132290    rs747574    C    T    515.84    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.249;QD=14.74;ReadPosRankSum=0.451;SNPEFF_AMINO_ACID_CHANGE=L267;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10132210_10132954;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000171214    GT:AD:DP:GQ:PL    0/1:16,19:35:99:546,0,366
19    10160578    rs11085554    C    T    62.32    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.546;QD=6.23;ReadPosRankSum=0.895;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:7,3:10:92.31:92,0,255
19    10165844    rs60321046    G    A    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.61;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:2,2:4:56.16:72,0,56
19    10165854    rs56717463    T    C    34.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=5.74;ReadPosRankSum=1.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:4,2:6:64.40:64,0,142
19    10165932    rs8113341    A    G    121.81    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DB;DP=17;Dels=0.0;FS=2.216;HRun=1;HaplotypeScore=0.8667;MQ=58.63;MQ0=0;MQRankSum=2.756;QD=7.17;ReadPosRankSum=0.674;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:12,5:17:99:152,0,266
19    10166114    rs10426597    A    G    124.05    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.069;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.258;QD=5.64;ReadPosRankSum=0.774;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:16,6:22:99:154,0,556
19    10166233    rs10405132    C    T    779.96    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.022;DB;DP=55;Dels=0.0;FS=4.539;HRun=0;HaplotypeScore=2.8399;MQ=57.0;MQ0=0;MQRankSum=-2.012;QD=14.18;ReadPosRankSum=-1.103;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:28,27:55:99:810,0,958
19    10166243    rs10403535    G    T    780.59    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=62;Dels=0.0;FS=2.132;HRun=1;HaplotypeScore=2.7997;MQ=56.96;MQ0=0;MQRankSum=0.443;QD=12.59;ReadPosRankSum=-0.957;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:32,30:62:99:811,0,994
19    10166253    rs10411594    T    C    822.96    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=0.479;DB;DP=69;Dels=0.0;FS=1.332;HRun=0;HaplotypeScore=2.7232;MQ=57.27;MQ0=0;MQRankSum=-0.217;QD=11.93;ReadPosRankSum=-1.543;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:34,35:69:99:853,0,1095
19    10169245    rs1993466    A    G    629.12    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.055;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-1.075;QD=12.84;ReadPosRankSum=0.955;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:27,22:49:99:659,0,821
19    10169261    rs11667703    C    T    584.74    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.712;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.49;MQ0=0;MQRankSum=0.628;QD=12.99;ReadPosRankSum=1.131;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:25,20:45:99:615,0,762
19    10169278    rs4552116    T    G    497.74    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.046;DB;DP=37;Dels=0.0;FS=1.363;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.32;QD=13.45;ReadPosRankSum=-0.808;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:20,17:37:99:528,0,704
19    10169477    rs11667515    G    A    438.68    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=35;Dels=0.0;FS=4.41;HRun=0;HaplotypeScore=1.7306;MQ=60.0;MQ0=0;MQRankSum=-1.665;QD=12.53;ReadPosRankSum=1.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=C3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495140    GT:AD:DP:GQ:PL    0/1:12,22:35:99:469,0,342
19    10218332    rs2305789    A    G    1774.11    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.739;DB;DP=147;Dels=0.0;FS=2.11;HRun=0;HaplotypeScore=5.8822;MQ=59.18;MQ0=0;MQRankSum=-0.537;QD=12.07;ReadPosRankSum=-1.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAN-P2RY11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393796    GT:AD:DP:GQ:PL    0/1:83,63:147:99:1804,0,2496
19    10218408    rs2305790    G    A    1686.30    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.803;DB;DP=115;Dels=0.0;FS=5.237;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.601;QD=14.66;ReadPosRankSum=-0.686;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPAN-P2RY11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393796    GT:AD:DP:GQ:PL    0/1:56,59:115:99:1716,0,1615
19    10221151    rs2305792    C    G    61.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=6.17;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253108    GT:AD:DP:GQ:PL    0/1:7,3:10:91.68:92,0,227
19    10224131    rs12462506    T    G    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253108    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
19    10225682    rs3816556    G    C    127.09    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=12;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.9332;MQ=58.05;MQ0=0;MQRankSum=-1.0;QD=10.59;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253108    GT:AD:DP:GQ:PL    0/1:7,5:12:99:157,0,170
19    10225777    rs7401    A    G    163.96    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9203;MQ=58.83;MQ0=0;MQRankSum=1.139;QD=10.25;ReadPosRankSum=-0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471843    GT:AD:DP:GQ:PL    0/1:10,6:16:99:194,0,324
19    10226256    rs7710    A    G    534.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.773;DB;DP=40;Dels=0.0;FS=1.281;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=0.267;QD=13.36;ReadPosRankSum=-0.52;SNPEFF_AMINO_ACID_CHANGE=F282;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10226155_10226261;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3G;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253108    GT:AD:DP:GQ:PL    0/1:20,20:40:99:564,0,590
19    10229297    rs11667630    C    A    377.41    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=3.237;DB;DP=66;Dels=0.0;FS=2.636;HRun=1;HaplotypeScore=5.976;MQ=55.16;MQ0=0;MQRankSum=-1.202;QD=5.72;ReadPosRankSum=-2.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321826    GT:AD:DP:GQ:PL    0/1:43,22:66:99:407,0,1057
19    10229521    rs2290687    C    T    536.01    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.371;DB;DP=30;Dels=0.0;FS=6.831;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.652;QD=17.87;ReadPosRankSum=0.787;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321826    GT:AD:DP:GQ:PL    0/1:12,18:30:99:566,0,302
19    10251747    rs2290684    A    G    724.69    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=58;Dels=0.0;FS=8.938;HRun=1;HaplotypeScore=0.9159;MQ=59.6;MQ0=0;MQRankSum=-1.29;QD=12.49;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340748    GT:AD:DP:GQ:PL    0/1:31,27:58:99:755,0,1020
19    10257245    rs2288349    G    A    392.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9831;MQ=60.0;MQ0=0;MQRankSum=0.373;QD=13.09;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340748    GT:AD:DP:GQ:PL    0/1:15,15:30:99:423,0,431
19    10262651    rs1863771    C    T    109.44    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=57.9;MQ0=0;MQRankSum=0.0;QD=12.16;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340748    GT:AD:DP:GQ:PL    0/1:5,4:9:99:139,0,140
19    10265248    rs2114724    T    C    421.51    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=43;Dels=0.0;FS=2.756;HRun=3;HaplotypeScore=1.9822;MQ=58.92;MQ0=0;MQRankSum=-0.379;QD=9.8;ReadPosRankSum=-0.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340748    GT:AD:DP:GQ:PL    0/1:24,19:43:99:452,0,759
19    10265312    rs721186    T    C    1292.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.44;MQ0=0;QD=30.78;SNPEFF_AMINO_ACID_CHANGE=T446;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10265262_10265449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541266    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1326,108,0
19    10267077    rs2228611    T    C    761.55    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.488;DB;DP=54;Dels=0.0;FS=2.34;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.704;QD=14.1;ReadPosRankSum=-1.327;SNPEFF_AMINO_ACID_CHANGE=P315;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10267067_10267185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541266    GT:AD:DP:GQ:PL    0/1:25,29:54:99:792,0,675
19    10270746    rs35336927    GA    G    1022.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=11;HaplotypeScore=258.3384;IndelType=D;MQ=57.88;MQ0=0;QD=20.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340748    GT:AD:DP:GQ:PL    1/1:6,43:50:99:1064,131,0
19    10273316    rs138046974    AG    A    229.53    PASS    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=3.352;DB;DP=44;FS=12.681;HRun=1;HaplotypeScore=403.3198;IndelType=D;MQ=43.67;MQ0=0;MQRankSum=-3.66;QD=5.22;ReadPosRankSum=0.615;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340748    GT:AD:DP:GQ:PL    0/1:31,13:44:99:269,0,231
19    10284778    rs759920    A    G    34.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=8.59;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340748    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:64,0,62
19    10369086    rs17000211    C    T    1933.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.24;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253099    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1967,147,0
19    10370654    rs1059849    A    G    70.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253099    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:103,9,0
19    10415781    rs2291473    T    C    719.81    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=52;Dels=0.0;FS=1.085;HRun=0;HaplotypeScore=0.7887;MQ=58.47;MQ0=0;MQRankSum=0.193;QD=13.84;ReadPosRankSum=-0.321;SNPEFF_AMINO_ACID_CHANGE=I184V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10415751_10415884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZGLP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403352    GT:AD:DP:GQ:PL    0/1:24,28:52:99:750,0,745
19    10444826    rs2278442    G    A    169.06    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.31;DB;DP=19;Dels=0.0;FS=2.003;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.549;QD=8.9;ReadPosRankSum=-0.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160262    GT:AD:DP:GQ:PL    0/1:12,7:19:99:199,0,336
19    10449392    rs2304240    A    G    1065.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=35.51;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10449358_10449624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICAM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000160262    GT:AD:DP:GQ:PL    1/1:0,30:30:84.24:1098,84,0
19    10464687    rs280497    A    G    816.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.26;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_10464204_10464754;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000529739    GT:AD:DP:GQ:PL    1/1:0,27:27:72.20:850,72,0
19    10469975    rs12720356    A    C    58.53    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DB;DP=12;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.294;QD=4.88;ReadPosRankSum=0.555;SNPEFF_AMINO_ACID_CHANGE=I431S;SNPEFF_CODON_CHANGE=aTc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10469851_10469978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543792    GT:AD:DP:GQ:PL    0/1:9,3:12:88.52:89,0,328
19    10472933    rs280519    A    G    819.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264818    GT:AD:DP:GQ:PL    1/1:0,26:26:66.18:852,66,0
19    10475652    rs2304256    C    A    880.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.35;SNPEFF_AMINO_ACID_CHANGE=V109F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10475527_10475724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543792    GT:AD:DP:GQ:PL    1/1:0,30:30:72.22:914,72,0
19    10475760    rs12720270    G    A    136.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.717;QD=11.38;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525824    GT:AD:DP:GQ:PL    0/1:6,6:12:99:167,0,160
19    10477067    rs34725611    A    G    1156.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6264;MQ=59.42;MQ0=0;QD=28.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525824    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1190,102,0
19    10565651    rs74453701    G    C    332.87    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.324;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.043;QD=12.33;ReadPosRankSum=0.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293683    GT:AD:DP:GQ:PL    0/1:14,13:27:99:363,0,459
19    10568519    rs4804134    T    G    1588.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293683    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1621,132,0
19    10577843    rs1051738    C    A    758.10    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.356;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.011;QD=16.85;ReadPosRankSum=2.034;SNPEFF_AMINO_ACID_CHANGE=A497E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10577563_10580305;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344979    GT:AD:DP:GQ:PL    0/1:19,26:45:99:788,0,596
19    10599836    rs11878494    G    C    215.95    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.1865;MQ=47.5;MQ0=0;MQRankSum=-0.625;QD=9.39;ReadPosRankSum=-0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KEAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171111    GT:AD:DP:GQ:PL    0/1:11,10:23:99:246,0,247
19    10600442    rs1048290    G    C    1015.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.758;QD=30.78;ReadPosRankSum=-1.625;SNPEFF_AMINO_ACID_CHANGE=L471;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10600324_10600529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KEAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000171111    GT:AD:DP:GQ:PL    1/1:1,32:33:49.92:1049,50,0
19    10600654    rs11879158    G    A    73.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KEAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171111    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:106,9,0
19    10602180    rs11085735    A    C    225.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KEAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000171111    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:259,21,0
19    10610236    rs1048287    A    G    186.45    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.196;DB;DP=31;Dels=0.0;FS=3.846;HRun=0;HaplotypeScore=0.6651;MQ=59.25;MQ0=0;MQRankSum=1.106;QD=6.01;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=G158;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10610071_10610756;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KEAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000171111    GT:AD:DP:GQ:PL    0/1:23,8:31:99:216,0,760
19    10625067    rs6511701    A    C    272.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_AMINO_ACID_CHANGE=A207;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10623419_10625705;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S1PR5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333430    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:305,24,0
19    10625796    rs10416073    A    C    188.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=23.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S1PR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333430    GT:AD:DP:GQ:PL    1/1:0,8:8:18.03:221,18,0
19    10655351    rs111980498    G    A    93.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=57.39;MQ0=0;MQRankSum=-0.729;QD=10.4;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309469    GT:AD:DP:GQ:PL    0/1:5,4:9:99:124,0,126
19    10664632    rs3087689    A    G    60.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.54;ReadPosRankSum=1.221;SNPEFF_AMINO_ACID_CHANGE=S705P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10664267_10664957;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361821    GT:AD:DP:GQ:PL    0/1:5,3:8:90.29:90,0,177
19    10665691    rs10419405    T    C    310.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.429;QD=20.73;ReadPosRankSum=1.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309469    GT:AD:DP:GQ:PL    0/1:5,10:15:99:341,0,147
19    10665912    rs6146467    C    CCCGCCCTGCCCGCAGCGCACCTGGCT    3684.54    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.713;DB;DP=22;FS=2.199;HRun=0;HaplotypeScore=345.842;IndelType=I;MQ=46.68;MQ0=0;MQRankSum=-2.361;QD=167.48;ReadPosRankSum=0.324;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309469    GT:AD:DP:GQ:PL    0/1:13,5:22:99:3685,0,759
19    10666112    rs12459941    G    A    149.17    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.956;QD=18.65;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309469    GT:AD:DP:GQ:PL    0/1:3,5:8:88.84:179,0,89
19    10668452    rs3745255    A    G    366.62    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.859;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.36;MQ0=0;MQRankSum=-0.253;QD=10.18;ReadPosRankSum=-0.354;SNPEFF_AMINO_ACID_CHANGE=F148;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10668445_10668466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539027    GT:AD:DP:GQ:PL    0/1:21,15:36:99:397,0,734
19    10668673    rs1982074    A    G    233.90    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=15;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.533;QD=14.62;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=L447P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10668648_10668736;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361821    GT:AD:DP:GQ:PL    0/1:5,9:15:99:264,0,171
19    10669032    rs892084    T    C    136.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.422;QD=15.11;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATG4D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309469    GT:AD:DP:GQ:PL    0/1:3,6:9:95.60:166,0,96
19    10670184    rs3826709    C    G    1679.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_AMINO_ACID_CHANGE=E351Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10670035_10670205;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361821    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1712,126,0
19    10671664    rs7259124    T    C    259.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=20;Dels=0.0;FS=5.315;HRun=0;HaplotypeScore=1.2434;MQ=58.84;MQ0=0;MQRankSum=-1.021;QD=12.95;ReadPosRankSum=1.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KRI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537964    GT:AD:DP:GQ:PL    0/1:10,10:20:99:289,0,247
19    10673302    rs35523350    C    A    260.73    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.852;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.514;QD=12.42;ReadPosRankSum=-0.739;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335766    GT:AD:DP:GQ:PL    0/1:11,10:21:99:291,0,394
19    10679240    rs1968445    C    G    34.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.36;SNPEFF_AMINO_ACID_CHANGE=R30;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10679189_10679344;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKN2D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335766    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:65,6,0
19    10687757    rs7252007    T    C    379.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250244    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:412,30,0
19    10689518    rs73018654    G    A    571.73    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=4.108;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.26;MQ0=0;MQRankSum=0.274;QD=13.3;ReadPosRankSum=1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250244    GT:AD:DP:GQ:PL    0/1:22,21:43:99:602,0,535
19    10690557    rs10426276    G    C    1071.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250244    GT:AD:DP:GQ:PL    1/1:0,30:31:84.25:1105,84,0
19    10692000    rs1045361    T    C    1269.55    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.38;DB;DP=103;Dels=0.0;FS=5.136;HRun=2;HaplotypeScore=2.6147;MQ=59.82;MQ0=0;MQRankSum=-0.385;QD=12.33;ReadPosRankSum=-0.596;SNPEFF_AMINO_ACID_CHANGE=S205;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10691942_10692068;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250244    GT:AD:DP:GQ:PL    0/1:55,48:103:99:1300,0,1720
19    10692117    rs2304161    T    C    668.30    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.917;DB;DP=71;Dels=0.0;FS=5.398;HRun=2;HaplotypeScore=1.5592;MQ=59.08;MQ0=0;MQRankSum=-0.446;QD=9.41;ReadPosRankSum=0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250244    GT:AD:DP:GQ:PL    0/1:43,28:71:99:698,0,1356
19    10692129    rs2304160    G    A    795.08    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.082;DB;DP=67;Dels=0.0;FS=10.496;HRun=0;HaplotypeScore=2.4947;MQ=59.03;MQ0=0;MQRankSum=1.154;QD=11.87;ReadPosRankSum=-0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250244    GT:AD:DP:GQ:PL    0/1:37,30:67:99:825,0,1247
19    10694239    rs11085739    A    G    346.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.112;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=0.255;QD=11.55;ReadPosRankSum=-0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250244    GT:AD:DP:GQ:PL    0/1:18,12:30:99:376,0,431
19    10694244    rs11085740    C    T    313.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.23;MQ0=0;MQRankSum=-0.783;QD=10.46;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250244    GT:AD:DP:GQ:PL    0/1:18,12:30:99:344,0,528
19    10738639    rs3087969    C    T    639.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=D66;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10738596_10738680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407327    GT:AD:DP:GQ:PL    1/1:0,19:19:54.13:673,54,0
19    10741622    rs12710257    A    G    399.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.44;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,15:15:42.06:432,42,0
19    10741681    rs60016481    C    CA    441.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.23;DB;DP=43;FS=2.508;HRun=15;HaplotypeScore=279.3555;IndelType=I;MQ=52.9;MQ0=0;MQRankSum=-1.018;QD=10.27;ReadPosRankSum=-1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:21,16:43:22.20:484,22,0
19    10741907    rs12972963    A    G    2390.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.13;MQ0=0;QD=29.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2423,193,0
19    10742170    rs2288904    A    G    1456.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=30.35;SNPEFF_AMINO_ACID_CHANGE=Q152R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10742151_10742211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407327    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1490,120,0
19    10742287    rs1560711    C    T    1101.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1135,87,0
19    10742443    rs1560710    C    T    959.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,26:26:75.24:993,75,0
19    10742463    rs1560709    G    T    910.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:944,72,0
19    10742996    rs9797854    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    10745764    rs2163832    T    C    2987.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3238;MQ=58.49;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3021,259,0
19    10748121    rs3843751    C    T    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    10748820    rs3859514    T    C    1476.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=58.81;MQ0=0;QD=37.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1509,117,0
19    10749236    rs1560708    T    C    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC44A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335757    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    10752968    rs10405617    A    G    247.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011475.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430975    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:281,24,0
19    10781080    .    T    C    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250241    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:71,0,69
19    10787540    rs10407923    T    C    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250241    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    10787744    rs1982075    C    G    1236.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250241    GT:AD:DP:GQ:PL    1/1:0,40:40:93.31:1270,93,0
19    10793749    rs2738039    A    G    2669.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=36.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250241    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2702,202,0
19    10794630    rs2229383    G    T    1698.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=S681;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10794593_10794646;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000250241    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1731,126,0
19    10794793    rs892087    C    T    106.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.5;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250241    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:139,12,0
19    10799750    rs2742313    T    C    2202.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.68;MQ0=0;QD=37.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ILF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250241    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2236,168,0
19    10818092    rs892085    G    A    1129.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QTRT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250237    GT:AD:DP:GQ:PL    1/1:0,31:31:87.27:1163,87,0
19    10883126    rs3826803    C    G    1038.82    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.096;DB;DP=86;Dels=0.0;FS=6.098;HRun=0;HaplotypeScore=1.6642;MQ=59.73;MQ0=0;MQRankSum=-0.461;QD=12.08;ReadPosRankSum=-1.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314646    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1069,0,1438
19    10886206    rs4804528    G    T    261.95    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=13.79;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314646    GT:AD:DP:GQ:PL    0/1:10,9:19:99:292,0,341
19    10916684    rs2287029    C    T    474.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.683;DB;DP=24;Dels=0.0;FS=2.732;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.239;QD=19.78;ReadPosRankSum=-0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314646    GT:AD:DP:GQ:PL    0/1:9,15:24:99:505,0,232
19    10935797    .    T    G    275.53    FSFilter60    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.168;DP=76;Dels=0.0;FS=136.755;HRun=2;HaplotypeScore=3.6801;MQ=55.01;MQ0=0;MQRankSum=-1.272;QD=3.63;ReadPosRankSum=0.671;SNPEFF_AMINO_ACID_CHANGE=V260G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10935733_10935897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545324    GT:AD:DP:GQ:PL    0/1:40,35:76:99:306,0,1216
19    10939792    rs2229920    T    C    128.20    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.307;QD=6.41;ReadPosRankSum=0.044;SNPEFF_AMINO_ACID_CHANGE=A320;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10939712_10939944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545324    GT:AD:DP:GQ:PL    0/1:14,6:20:99:158,0,383
19    10961024    rs73009507    C    G    196.68    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=12;Dels=0.0;FS=5.332;HRun=0;HaplotypeScore=0.9983;MQ=58.43;MQ0=0;MQRankSum=0.135;QD=16.39;ReadPosRankSum=-1.461;SNPEFF_AMINO_ACID_CHANGE=P41A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_10960935_10961243;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397820    GT:AD:DP:GQ:PL    0/1:5,7:12:99:227,0,169
19    10961273    rs11085749    G    A    264.48    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=25;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.615;QD=10.58;ReadPosRankSum=-0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397820    GT:AD:DP:GQ:PL    0/1:14,11:25:99:294,0,375
19    10970558    rs8100581    A    G    1012.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397820    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1045,78,0
19    11031464    rs2288842    C    G    405.95    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=1.705;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=59.34;MQ0=0;MQRankSum=1.44;QD=11.6;ReadPosRankSum=2.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253031    GT:AD:DP:GQ:PL    0/1:19,16:35:99:436,0,626
19    11038843    rs892010    G    C    117.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YIPF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253031    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:150,12,0
19    11095896    rs78732262    T    C    752.74    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.577;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.644;QD=17.92;ReadPosRankSum=0.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:12,30:42:99:783,0,269
19    11105608    rs7935    T    C    94.33    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=25;Dels=0.04;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.11;MQ0=0;MQRankSum=-0.112;QD=3.63;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=H508;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11105504_11105677;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:20,5:25:99:124,0,532
19    11106790    rs11669202    T    C    727.21    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.642;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.61;QD=19.65;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:15,22:37:99:757,0,512
19    11107133    rs2304087    T    C    453.72    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=43;Dels=0.0;FS=12.712;HRun=0;HaplotypeScore=0.0;MQ=58.37;MQ0=0;MQRankSum=-0.641;QD=10.55;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:23,19:43:99:484,0,667
19    11113520    rs17001076    G    A    34.97    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.99;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:3,2:5:64.96:65,0,103
19    11113651    rs17001078    T    C    492.21    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=39;Dels=0.0;FS=1.594;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.08;QD=12.62;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:20,19:39:99:522,0,571
19    11113997    rs74942410    G    T    1083.63    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.722;DB;DP=81;Dels=0.0;FS=7.546;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;MQRankSum=-0.839;QD=13.38;ReadPosRankSum=1.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1114,0,1236
19    11120927    .    A    G    323.55    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.308;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.765;QD=11.56;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:16,11:28:99:354,0,534
19    11120937    rs17616318    C    T    615.59    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.062;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.507;QD=19.86;ReadPosRankSum=-0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:12,19:31:99:646,0,406
19    11136215    rs2075021    C    G    208.27    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.334;QD=9.06;ReadPosRankSum=1.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:14,9:23:99:238,0,417
19    11136315    rs2075022    C    T    105.49    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=15.07;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:3,4:7:99:135,0,100
19    11145691    rs28997582    C    T    31.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=5.18;ReadPosRankSum=-0.406;SNPEFF_AMINO_ACID_CHANGE=D1318;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11145590_11145808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413806    GT:AD:DP:GQ:PL    0/1:3,3:6:61.09:61,0,101
19    11168896    rs8104480    A    G    84.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.134;QD=7.0;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344626    GT:AD:DP:GQ:PL    0/1:8,4:12:99:114,0,278
19    11221454    rs2738442    T    C    1184.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7217;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1217,99,0
19    11221457    rs12710260    G    C    448.10    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=39;Dels=0.0;FS=1.273;HRun=2;HaplotypeScore=1.7219;MQ=60.0;MQ0=0;MQRankSum=1.856;QD=11.49;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:19,20:39:99:478,0,571
19    11224181    rs1003723    C    T    398.87    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.453;DB;DP=28;Dels=0.0;FS=6.085;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.868;QD=14.25;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:12,16:28:99:429,0,311
19    11224265    rs5930    A    G    699.51    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.044;DB;DP=38;Dels=0.0;FS=2.92;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.62;QD=18.41;ReadPosRankSum=0.862;SNPEFF_AMINO_ACID_CHANGE=R303;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11224211_11224438;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455727    GT:AD:DP:GQ:PL    0/1:14,24:38:99:730,0,426
19    11224491    rs1569372    A    G    35.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.17;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:2,3:5:65.85:66,0,70
19    11226601    rs148884843    CAA    C    58.60    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.986;DB;DP=20;FS=0.0;HRun=18;HaplotypeScore=169.8456;IndelType=D;MQ=54.89;MQ0=0;MQRankSum=-1.395;QD=2.93;ReadPosRankSum=0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:3,8:20:74.30:98,0,74
19    11227326    rs2738446    C    G    143.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.99;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:4,5:9:99:174,0,140
19    11227480    rs2738447    A    C    1334.61    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=2.509;DB;DP=100;Dels=0.0;FS=6.882;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.228;QD=13.35;ReadPosRankSum=-1.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:54,46:100:99:1365,0,1624
19    11227602    rs688    C    T    1949.11    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=4.299;DB;DP=109;Dels=0.0;FS=3.955;HRun=0;HaplotypeScore=1.8606;MQ=59.62;MQ0=0;MQRankSum=-1.218;QD=17.88;ReadPosRankSum=-0.843;SNPEFF_AMINO_ACID_CHANGE=N423;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11227535_11227674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455727    GT:AD:DP:GQ:PL    0/1:44,65:109:99:1979,0,1125
19    11230645    rs2569549    T    C    223.13    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9644;MQ=58.05;MQ0=0;MQRankSum=2.141;QD=18.59;ReadPosRankSum=1.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:5,7:12:99:253,0,164
19    11230650    rs145643854    GAAAC    G    530.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=99.9755;IndelType=D;MQ=59.06;MQ0=0;QD=40.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    1/1:1,11:13:36.12:573,36,0
19    11230881    rs5925    T    C    428.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.896;DB;DP=45;Dels=0.0;FS=1.268;HRun=1;HaplotypeScore=0.9983;MQ=59.59;MQ0=0;MQRankSum=0.282;QD=9.53;ReadPosRankSum=0.077;SNPEFF_AMINO_ACID_CHANGE=V485;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11230768_11230909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455727    GT:AD:DP:GQ:PL    0/1:27,18:45:99:459,0,864
19    11233941    rs5927    A    G    1557.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=R566;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11233850_11234020;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545707    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1591,120,0
19    11238399    rs2569539    G    A    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
19    11238548    rs2569538    A    G    387.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:421,36,0
19    11238807    rs2738460    C    T    350.66    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.077;DB;DP=28;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=2.4875;MQ=60.0;MQ0=0;MQRankSum=2.205;QD=12.52;ReadPosRankSum=-0.974;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:14,13:28:99:381,0,384
19    11240053    rs2569537    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    11241780    rs2116899    G    A    66.59    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.4;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:6,3:9:96.58:97,0,167
19    11241810    rs2116898    G    A    173.62    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=17;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=10.21;ReadPosRankSum=0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:11,6:17:99:204,0,265
19    11241877    rs2116897    G    A    922.42    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=53;Dels=0.0;FS=7.125;HRun=1;HaplotypeScore=2.1992;MQ=58.68;MQ0=0;MQRankSum=0.599;QD=17.4;ReadPosRankSum=1.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:24,29:53:99:952,0,675
19    11241915    rs6413504    A    G    819.45    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.76;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4351;MQ=59.01;MQ0=0;MQRankSum=-1.526;QD=11.71;ReadPosRankSum=0.966;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:41,29:70:99:849,0,1188
19    11242044    rs14158    G    A    447.83    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.324;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.25;MQ0=0;MQRankSum=-1.087;QD=14.45;ReadPosRankSum=-1.087;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LDLR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252444    GT:AD:DP:GQ:PL    0/1:15,16:31:99:478,0,480
19    11257780    rs10422949    T    C    65.17    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=11;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=2.5981;MQ=50.96;MQ0=0;MQRankSum=-0.55;QD=5.92;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPC24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423327    GT:AD:DP:GQ:PL    0/1:6,5:11:60.54:95,0,61
19    11258593    .    AAAAAAAAAAAAAAG    A    782.10    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DP=39;FS=5.75;HRun=0;HaplotypeScore=537.1776;IndelType=D;MQ=35.57;MQ0=0;MQRankSum=-0.785;QD=20.05;ReadPosRankSum=3.378;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPC24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423327    GT:AD:DP:GQ:PL    0/1:30,9:39:99:821,0,2939
19    11258638    rs8111157    G    A    394.24    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=0.602;DB;DP=50;Dels=0.0;FS=1.273;HRun=1;HaplotypeScore=0.0;MQ=45.94;MQ0=0;MQRankSum=1.477;QD=7.88;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPC24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423327    GT:AD:DP:GQ:PL    0/1:24,25:50:99:424,0,594
19    11258867    rs76078727    G    A    326.06    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.093;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=57.97;MQ0=0;MQRankSum=0.217;QD=14.18;ReadPosRankSum=-0.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPC24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423327    GT:AD:DP:GQ:PL    0/1:10,13:23:99:356,0,343
19    11266584    rs892114    A    G    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPC24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423327    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
19    11277074    rs4804572    C    T    30.18    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.31;ReadPosRankSum=-0.922;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:5,2:7:60.17:60,0,180
19    11277232    rs4804573    G    A    937.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.33;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:971,72,0
19    11286416    rs12460558    G    A    31.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.32;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:4,2:6:61.90:62,0,141
19    11287001    rs74179970    G    A    70.76    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.15;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:2,3:5:52.37:101,0,52
19    11287073    rs74179971    C    G    189.45    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.867;DB;DP=19;Dels=0.0;FS=4.102;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.454;QD=9.97;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:11,8:19:99:219,0,384
19    11303422    rs12972022    G    A    167.75    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.266;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.78;MQ0=0;MQRankSum=1.96;QD=8.83;ReadPosRankSum=0.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:12,6:19:99:198,0,292
19    11303459    rs35706290    GC    G    315.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.237;DB;DP=32;FS=3.098;HRun=12;HaplotypeScore=215.9539;IndelType=D;MQ=59.07;MQ0=0;MQRankSum=0.026;QD=9.86;ReadPosRankSum=-1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    1/1:13,19:32:10.03:357,10,0
19    11303469    rs7254270    C    A    322.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.07;MQ0=0;QD=10.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    1/1:1,12:32:30.09:356,30,0
19    11303554    rs17616661    A    G    694.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.345;DB;DP=60;Dels=0.0;FS=5.393;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.667;QD=11.57;ReadPosRankSum=0.606;SNPEFF_AMINO_ACID_CHANGE=M401T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11303507_11304718;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:35,25:60:99:724,0,1027
19    11303943    rs3745681    A    G    440.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=V271;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11303507_11304718;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:474,39,0
19    11304404    rs755237    C    T    1047.65    PASS    AB=0.37;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.677;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6961;MQ=58.97;MQ0=0;MQRankSum=0.862;QD=19.4;ReadPosRankSum=1.289;SNPEFF_AMINO_ACID_CHANGE=G118S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11303507_11304718;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:20,34:54:99:1078,0,506
19    11304498    rs755238    C    T    707.75    PASS    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=3.571;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.74;MQ0=0;MQRankSum=0.974;QD=19.13;ReadPosRankSum=0.477;SNPEFF_AMINO_ACID_CHANGE=S86;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11303507_11304718;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:11,26:37:99:738,0,262
19    11305161    rs754529    A    G    299.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.655;DB;DP=33;Dels=0.0;FS=11.729;HRun=3;HaplotypeScore=0.5784;MQ=59.43;MQ0=0;MQRankSum=-0.917;QD=9.06;ReadPosRankSum=-0.056;SNPEFF_AMINO_ACID_CHANGE=A9;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11305151_11305266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KANK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355150    GT:AD:DP:GQ:PL    0/1:21,12:33:99:329,0,611
19    11305245    rs754528    T    C    329.97    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.442;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=1.954;QD=14.35;ReadPosRankSum=-0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294618    GT:AD:DP:GQ:PL    0/1:10,13:23:99:360,0,304
19    11310920    rs8101345    C    T    93.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294618    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:126,9,0
19    11313256    rs3745682    G    A    5537.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3391;MQ=59.03;MQ0=0;QD=32.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294618    GT:AD:DP:GQ:PL    1/1:1,167:168:99:5537,421,0
19    11326629    rs10403991    C    A    847.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294618    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:881,66,0
19    11348098    rs34301174    G    A    645.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294618    GT:AD:DP:GQ:PL    1/1:0,21:21:51.14:679,51,0
19    11358799    rs12978266    G    A    1485.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=35.36;SNPEFF_AMINO_ACID_CHANGE=P250L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11358742_11358827;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000294618    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1518,114,0
19    11363146    rs8113582    A    T    4145.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9997;MQ=59.42;MQ0=0;QD=34.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000294618    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4146,304,0
19    11417200    rs322151    C    T    102.13    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.678;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=9.28;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPAN16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316737    GT:AD:DP:GQ:PL    0/1:7,4:11:99:132,0,259
19    11436302    rs78111215    A    AG    1718.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=3;HaplotypeScore=112.0521;IndelType=I;MQ=60.93;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222120    GT:AD:DP:GQ:PL    1/1:3,43:46:99:1760,126,0
19    11446031    rs112354933    G    C    36.20    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.03;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222120    GT:AD:DP:GQ:PL    0/1:4,2:6:66.19:66,0,110
19    11473358    rs11540666    C    G    277.94    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=1.514;DB;DP=21;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.458;QD=13.24;ReadPosRankSum=1.162;SNPEFF_AMINO_ACID_CHANGE=T278S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11473189_11473365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC024575.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251473    GT:AD:DP:GQ:PL    0/1:11,10:21:99:308,0,381
19    11474544    .    G    C    133.37    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=11.11;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC024575.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251473    GT:AD:DP:GQ:PL    0/1:7,5:12:99:163,0,241
19    11495343    rs148846763    T    TTC    242.62    PASS    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=0.439;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=230.893;IndelType=I;MQ=57.0;MQ0=0;MQRankSum=-1.025;QD=5.27;ReadPosRankSum=-3.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342684    GT:AD:DP:GQ:PL    0/1:36,5:46:99:282,0,163
19    11495434    .    C    T    54.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.96;MQ0=0;MQRankSum=0.0;QD=9.09;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342684    GT:AD:DP:GQ:PL    0/1:2,4:6:62.34:85,0,62
19    11505501    .    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342684    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    11526759    rs160838    G    A    1314.75    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.588;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.53;MQ0=0;MQRankSum=0.116;QD=13.28;ReadPosRankSum=-0.942;SNPEFF_AMINO_ACID_CHANGE=A164V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11526613_11526824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380456    GT:AD:DP:GQ:PL    0/1:52,47:99:99:1345,0,1807
19    11526765    rs167479    G    T    2976.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=59.25;MQ0=0;QD=34.21;SNPEFF_AMINO_ACID_CHANGE=P162H;SNPEFF_CODON_CHANGE=cCc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11526613_11526824;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380456    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3009,238,0
19    11534503    rs113074534    TG    T    84.49    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;FS=6.021;HRun=11;HaplotypeScore=109.8993;IndelType=D;MQ=56.31;MQ0=0;MQRankSum=1.589;QD=7.04;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356392    GT:AD:DP:GQ:PL    0/1:5,7:12:39.97:124,0,40
19    11541712    rs34094    T    C    4742.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9677;MQ=59.49;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356392    GT:AD:DP:GQ:PL    1/1:1,135:136:99:4743,361,0
19    11542013    rs34093    T    C    484.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356392    GT:AD:DP:GQ:PL    1/1:0,15:15:42.09:518,42,0
19    11558240    rs186375    T    C    442.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7764;MQ=58.45;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359227    GT:AD:DP:GQ:PL    1/1:0,14:15:36.11:476,36,0
19    11558275    rs11557488    G    A    167.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.027;QD=10.45;ReadPosRankSum=-0.545;SNPEFF_AMINO_ACID_CHANGE=A291T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11558254_11558412;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCSH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252455    GT:AD:DP:GQ:PL    0/1:8,8:16:99:197,0,211
19    11558340    rs3217229    AGAG    A    157.83    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=16;FS=3.31;HRun=0;HaplotypeScore=98.0713;IndelType=D;MQ=57.05;MQ0=0;MQRankSum=-1.568;QD=9.86;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=E313-;SNPEFF_CODON_CHANGE=gag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_19_11558254_11558412;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKCSH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252455    GT:AD:DP:GQ:PL    0/1:8,5:16:99:197,0,128
19    11569316    rs2242112    G    A    483.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=45;Dels=0.0;FS=1.158;HRun=0;HaplotypeScore=1.933;MQ=59.49;MQ0=0;MQRankSum=0.035;QD=10.75;ReadPosRankSum=0.081;SNPEFF_AMINO_ACID_CHANGE=Y148;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11569273_11569426;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELAVL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359227    GT:AD:DP:GQ:PL    0/1:27,18:45:99:514,0,810
19    11597711    rs112316419    C    T    55.91    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=5.08;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF653;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293771    GT:AD:DP:GQ:PL    0/1:7,4:11:85.91:86,0,258
19    11598483    rs311805    T    C    276.94    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.238;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.52;MQ0=1;MQRankSum=-0.043;QD=8.65;ReadPosRankSum=-0.559;SNPEFF_AMINO_ACID_CHANGE=P265;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11598107_11598718;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF653;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293771    GT:AD:DP:GQ:PL    0/1:20,12:32:99:307,0,488
19    11598527    rs140179197    C    T    576.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.412;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.8;MQ0=1;MQRankSum=1.032;QD=16.01;ReadPosRankSum=-0.157;SNPEFF_AMINO_ACID_CHANGE=V251M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11598107_11598718;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF653;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293771    GT:AD:DP:GQ:PL    0/1:14,21:36:99:606,0,397
19    11623849    rs12609928    C    G    278.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.217;DB;DP=28;Dels=0.0;FS=1.66;HRun=1;HaplotypeScore=0.0;MQ=57.48;MQ0=0;MQRankSum=0.058;QD=9.96;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECSIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252440    GT:AD:DP:GQ:PL    0/1:14,14:28:99:309,0,377
19    11624176    rs8113534    G    C    34.59    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.198;QD=4.94;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECSIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252440    GT:AD:DP:GQ:PL    0/1:5,2:7:64.58:65,0,189
19    11624491    rs4804168    C    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECSIT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252440    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    11708361    rs11551815    C    T    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.12;ReadPosRankSum=1.231;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_11708235_11708445;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF627;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361113    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,109
19    11708464    rs72997090    G    C    163.68    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.513;QD=9.63;ReadPosRankSum=0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF627;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361113    GT:AD:DP:GQ:PL    0/1:10,7:17:99:194,0,287
19    11708575    rs147298484    G    A    80.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=13.4;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF627;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361113    GT:AD:DP:GQ:PL    0/1:2,4:6:68.47:110,0,68
19    11727503    rs4545929    T    C    519.91    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.84;DB;DP=41;Dels=0.0;FS=6.623;HRun=1;HaplotypeScore=1.7262;MQ=57.82;MQ0=0;MQRankSum=0.894;QD=12.68;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF627;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361113    GT:AD:DP:GQ:PL    0/1:21,19:41:99:550,0,686
19    11776766    rs111679389    C    T    137.52    MQFilter40    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=24.29;MQ0=4;MQRankSum=-0.555;QD=8.09;ReadPosRankSum=1.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HNRNPA1P10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406078    GT:AD:DP:GQ:PL    0/1:9,8:17:99:168,0,140
19    11776819    rs150421591    A    G    332.46    MQFilter40    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.949;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.44;MQ0=0;MQRankSum=0.382;QD=10.07;ReadPosRankSum=0.965;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HNRNPA1P10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406078    GT:AD:DP:GQ:PL    0/1:19,14:33:99:362,0,332
19    11777889    rs13345223    T    C    1307.14    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.104;DB;DP=102;Dels=0.0;FS=2.87;HRun=0;HaplotypeScore=0.5784;MQ=46.56;MQ0=0;MQRankSum=-1.34;QD=12.82;ReadPosRankSum=0.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF833P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344893    GT:AD:DP:GQ:PL    0/1:49,52:102:99:1337,0,1379
19    11778026    rs13346587    G    C    138.99    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.322;QD=17.37;ReadPosRankSum=1.517;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF833P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344893    GT:AD:DP:GQ:PL    0/1:3,5:8:94.67:169,0,95
19    11795897    rs286298    C    G    252.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.115;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=12.03;ReadPosRankSum=-0.867;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF833P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344893    GT:AD:DP:GQ:PL    0/1:8,12:21:99:283,0,266
19    11834295    rs11878969    C    T    80.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.14;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF823;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341191    GT:AD:DP:GQ:PL    0/1:2,3:5:62.84:111,0,63
19    11891003    rs799193    G    A    1956.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_AMINO_ACID_CHANGE=V122I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11890834_11894893;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF441;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357901    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1990,144,0
19    11943697    rs400106    G    A    1774.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=31.12;SNPEFF_AMINO_ACID_CHANGE=S569N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_11942183_11946016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF440;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304060    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1807,144,0
19    12014355    rs11671654    C    G    1561.14    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.861;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.731;QD=13.34;ReadPosRankSum=0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF69;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340180    GT:AD:DP:GQ:PL    0/1:62,53:116:99:1591,0,1999
19    12132982    rs279169    T    C    80.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2006C1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495324    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
19    12154799    rs67102109    G    C    508.73    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=2.025;DB;DP=44;Dels=0.0;FS=1.186;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.868;QD=11.56;ReadPosRankSum=1.157;SNPEFF_AMINO_ACID_CHANGE=H473D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12154620_12156024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022415.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547628    GT:AD:DP:GQ:PL    0/1:27,17:44:99:539,0,898
19    12157334    rs4804176    T    G    1410.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2006C1.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476474    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1444,108,0
19    12185102    rs7250239    G    A    334.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=26;Dels=0.0;FS=1.77;HRun=0;HaplotypeScore=0.9832;MQ=58.38;MQ0=0;MQRankSum=-0.952;QD=12.87;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF844;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439326    GT:AD:DP:GQ:PL    0/1:14,12:26:99:365,0,499
19    12186148    rs10424893    T    C    735.60    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.691;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.96;MQ0=0;MQRankSum=1.916;QD=9.94;ReadPosRankSum=-0.642;SNPEFF_AMINO_ACID_CHANGE=L51S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12186127_12187968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF844;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441304    GT:AD:DP:GQ:PL    0/1:45,29:74:99:766,0,1290
19    12186611    rs7259684    A    G    524.65    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.314;DB;DP=44;Dels=0.0;FS=28.012;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.208;QD=11.92;ReadPosRankSum=0.966;SNPEFF_AMINO_ACID_CHANGE=K201E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12186388_12186993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF844;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535505    GT:AD:DP:GQ:PL    0/1:24,20:44:99:555,0,787
19    12186761    rs7259845    A    G    417.17    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.41;MQ0=0;MQRankSum=-0.57;QD=10.7;ReadPosRankSum=0.424;SNPEFF_AMINO_ACID_CHANGE=T251A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12186388_12186993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF844;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535505    GT:AD:DP:GQ:PL    0/1:21,18:39:99:447,0,670
19    12186857    rs6511763    G    C    521.96    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.208;DB;DP=44;Dels=0.0;FS=2.544;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.095;QD=11.86;ReadPosRankSum=-0.806;SNPEFF_AMINO_ACID_CHANGE=A283P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12186388_12186993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF844;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535505    GT:AD:DP:GQ:PL    0/1:25,19:44:99:552,0,761
19    12187210    rs6511764    A    G    1267.79    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=0.42;DB;DP=75;Dels=0.0;FS=0.919;HRun=1;HaplotypeScore=0.9665;MQ=59.75;MQ0=0;MQRankSum=0.678;QD=16.9;ReadPosRankSum=1.093;SNPEFF_AMINO_ACID_CHANGE=V425;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12186127_12192380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF844;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439326    GT:AD:DP:GQ:PL    0/1:32,43:75:99:1298,0,910
19    12187861    rs10426017    T    G    682.49    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.962;DB;DP=43;Dels=0.0;FS=6.477;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.524;QD=15.87;ReadPosRankSum=0.207;SNPEFF_AMINO_ACID_CHANGE=I642M;SNPEFF_CODON_CHANGE=atT/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12186127_12192380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF844;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439326    GT:AD:DP:GQ:PL    0/1:20,23:43:99:712,0,630
19    12220865    rs4268868    A    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022415.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339302    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    12222259    rs73000467    G    A    154.04    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=3.083;DB;DP=29;Dels=0.0;FS=4.476;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.229;QD=5.31;ReadPosRankSum=0.637;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022415.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397759    GT:AD:DP:GQ:PL    0/1:22,7:29:99:184,0,773
19    12222381    rs1866382    C    G    804.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.94;MQ0=0;QD=32.18;SNPEFF_AMINO_ACID_CHANGE=R7G;SNPEFF_CODON_CHANGE=Cga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12222061_12225491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022415.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339302    GT:AD:DP:GQ:PL    1/1:0,25:25:66.18:837,66,0
19    12222861    rs1975349    T    C    542.94    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.167;DB;DP=40;Dels=0.0;FS=2.694;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.84;QD=13.57;ReadPosRankSum=0.298;SNPEFF_AMINO_ACID_CHANGE=C167R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12222061_12225491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022415.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339302    GT:AD:DP:GQ:PL    0/1:19,21:40:99:573,0,673
19    12224172    rs8109273    T    C    710.83    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=54;Dels=0.0;FS=5.598;HRun=0;HaplotypeScore=0.8321;MQ=59.14;MQ0=0;MQRankSum=-1.14;QD=13.16;ReadPosRankSum=-0.619;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022415.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000397759    GT:AD:DP:GQ:PL    0/1:31,23:54:99:741,0,900
19    12256358    rs12972621    T    G    1209.62    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=1.895;DB;DP=82;Dels=0.0;FS=5.698;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-1.441;QD=14.75;ReadPosRankSum=1.281;SNPEFF_AMINO_ACID_CHANGE=R225;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12255711_12257039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022415.5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355738    GT:AD:DP:GQ:PL    0/1:42,40:82:99:1240,0,1401
19    12355506    rs1047138    C    T    709.15    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.065;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.154;QD=20.26;ReadPosRankSum=0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393337    GT:AD:DP:GQ:PL    0/1:13,22:35:99:739,0,401
19    12383109    rs146256250    C    T    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354656    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,109
19    12384988    rs2438531    T    C    560.91    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=16.5;ReadPosRankSum=-2.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354656    GT:AD:DP:GQ:PL    0/1:15,19:34:99:591,0,473
19    12385749    rs2459040    C    T    623.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.911;DB;DP=44;Dels=0.0;FS=4.623;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.182;QD=14.18;ReadPosRankSum=-1.057;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354656    GT:AD:DP:GQ:PL    0/1:22,22:44:99:654,0,747
19    12385989    rs2459041    A    G    319.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.45;MQ0=0;MQRankSum=0.306;QD=21.31;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355684    GT:AD:DP:GQ:PL    0/1:5,10:15:99:350,0,150
19    12402112    rs2458999    C    T    308.16    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.94;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.041;QD=16.22;ReadPosRankSum=-1.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355684    GT:AD:DP:GQ:PL    0/1:8,11:19:99:338,0,244
19    12502457    rs4804669    A    G    1925.60    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.425;DB;DP=185;Dels=0.0;FS=9.056;HRun=1;HaplotypeScore=0.5784;MQ=51.56;MQ0=7;MQRankSum=-3.864;QD=10.41;ReadPosRankSum=-0.234;SNPEFF_AMINO_ACID_CHANGE=L220P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12500830_12503020;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF799;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419318    GT:AD:DP:GQ:PL    0/1:99,86:185:99:1956,0,3228
19    12503074    rs62111328    G    C    145.90    MQFilter40;SnpCluster    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.799;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9846;MQ=31.24;MQ0=7;MQRankSum=-1.871;QD=3.56;ReadPosRankSum=2.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF799;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419318    GT:AD:DP:GQ:PL    0/1:28,13:41:99:176,0,701
19    12503077    rs62111329    A    G    147.12    MQFilter40;SnpCluster    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9846;MQ=33.06;MQ0=8;MQRankSum=-2.324;QD=3.5;ReadPosRankSum=2.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF799;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419318    GT:AD:DP:GQ:PL    0/1:28,14:42:99:177,0,715
19    12503078    .    T    C    37.84    MQFilter40;QDFilter2;SnpCluster    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.284;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9846;MQ=32.98;MQ0=8;MQRankSum=-2.731;QD=0.92;ReadPosRankSum=2.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF799;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419318    GT:AD:DP:GQ:PL    0/1:33,8:41:67.83:68,0,806
19    12503538    .    C    G    151.47    PASS    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=2.005;DP=62;Dels=0.0;FS=2.86;HRun=0;HaplotypeScore=2.879;MQ=43.8;MQ0=2;MQRankSum=-2.726;QD=2.44;ReadPosRankSum=0.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF799;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419318    GT:AD:DP:GQ:PL    0/1:49,13:62:99:181,0,1428
19    12540818    rs28438452    G    C    181.28    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.47;MQ0=0;MQRankSum=2.329;QD=11.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436821    GT:AD:DP:GQ:PL    0/1:9,7:16:99:211,0,291
19    12540971    rs28559848    T    A    1099.07    MQFilter40    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=141;Dels=0.0;FS=0.741;HRun=1;HaplotypeScore=0.0;MQ=36.91;MQ0=19;MQRankSum=0.04;QD=7.79;ReadPosRankSum=0.556;SNPEFF_AMINO_ACID_CHANGE=*644L;SNPEFF_CODON_CHANGE=tAg/tTg;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_19_12540698_12541251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000411622    GT:AD:DP:GQ:PL    0/1:88,52:141:99:1129,0,2058
19    12541214    rs7256321    G    T    1071.90    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.141;DB;DP=114;Dels=0.0;FS=3.545;HRun=1;HaplotypeScore=0.5784;MQ=49.21;MQ0=0;MQRankSum=-4.287;QD=9.4;ReadPosRankSum=-1.084;SNPEFF_AMINO_ACID_CHANGE=P563Q;SNPEFF_CODON_CHANGE=cCa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540698_12541251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411622    GT:AD:DP:GQ:PL    0/1:62,52:114:99:1102,0,1977
19    12541250    rs45531232    T    C    919.75    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.859;DB;DP=102;Dels=0.0;FS=0.772;HRun=1;HaplotypeScore=0.0;MQ=48.02;MQ0=2;MQRankSum=-4.475;QD=9.02;ReadPosRankSum=0.159;SNPEFF_AMINO_ACID_CHANGE=E551G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540698_12541251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411622    GT:AD:DP:GQ:PL    0/1:54,48:102:99:950,0,1673
19    12541532    rs10422063    C    A    2644.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.67;MQ0=0;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=C485F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540521_12542794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2677,202,0
19    12541547    rs10402252    T    G    1509.61    PASS    AB=0.42;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.806;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.81;MQ0=0;MQRankSum=2.882;QD=17.15;ReadPosRankSum=0.524;SNPEFF_AMINO_ACID_CHANGE=K480T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540521_12542794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:37,51:88:99:1540,0,905
19    12541795    rs35699767    C    A    1777.22    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=147;Dels=0.0;FS=0.633;HRun=1;HaplotypeScore=1.9664;MQ=54.12;MQ0=5;MQRankSum=0.426;QD=12.01;ReadPosRankSum=-2.412;SNPEFF_AMINO_ACID_CHANGE=Q397H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540521_12542794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:82,65:147:99:1807,0,2470
19    12542355    rs4804183    A    G    1711.33    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=162;Dels=0.0;FS=5.091;HRun=0;HaplotypeScore=1.9315;MQ=45.15;MQ0=8;MQRankSum=0.311;QD=10.56;ReadPosRankSum=-0.931;SNPEFF_AMINO_ACID_CHANGE=L211;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540521_12542794;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:92,70:162:99:1741,0,2441
19    12542653    rs4239550    T    G    571.68    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=77;Dels=0.0;FS=6.636;HRun=0;HaplotypeScore=1.6229;MQ=53.46;MQ0=1;MQRankSum=0.21;QD=7.42;ReadPosRankSum=-0.629;SNPEFF_AMINO_ACID_CHANGE=K111N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540521_12542794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:33,44:77:99:602,0,1168
19    12542654    rs28599549    T    A    584.92    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.997;DB;DP=77;Dels=0.0;FS=6.636;HRun=0;HaplotypeScore=1.6229;MQ=53.46;MQ0=1;MQRankSum=0.367;QD=7.6;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=K111I;SNPEFF_CODON_CHANGE=aAa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540521_12542794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:33,44:77:99:615,0,1171
19    12542772    rs1134389    C    T    309.84    MQFilter40    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.781;DB;DP=63;Dels=0.0;FS=1.98;HRun=0;HaplotypeScore=0.0;MQ=28.83;MQ0=22;MQRankSum=0.992;QD=4.92;ReadPosRankSum=0.622;SNPEFF_AMINO_ACID_CHANGE=V72I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12540521_12542794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:41,21:63:99:340,0,624
19    12542828    rs4804691    G    A    206.24    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.091;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.65;MQ0=17;MQRankSum=-1.811;QD=5.73;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:21,14:36:99:236,0,175
19    12542848    rs4804692    G    C    234.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.72;MQ0=7;QD=13.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    1/1:6,12:18:24.06:268,24,0
19    12542851    rs4804693    A    G    180.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.21;MQ0=7;QD=10.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    1/1:6,11:17:21.03:214,21,0
19    12543251    rs138584869    A    C    358.26    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=2.373;DB;DP=78;Dels=0.0;FS=28.159;HRun=1;HaplotypeScore=0.9967;MQ=44.9;MQ0=7;MQRankSum=-4.738;QD=4.59;ReadPosRankSum=-0.059;SNPEFF_AMINO_ACID_CHANGE=V44G;SNPEFF_CODON_CHANGE=gTa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12543191_12543251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:53,25:78:99:388,0,1601
19    12543312    rs62114867    C    G    264.29    MQFilter40    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=1.832;DB;DP=46;Dels=0.0;FS=2.762;HRun=0;HaplotypeScore=0.8941;MQ=37.63;MQ0=7;MQRankSum=-2.756;QD=5.75;ReadPosRankSum=0.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:28,18:46:99:294,0,719
19    12543333    rs3979432    C    T    431.32    MQFilter40    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=4.181;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=31.11;MQ0=6;MQRankSum=0.885;QD=12.69;ReadPosRankSum=1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:15,19:34:99:461,0,192
19    12543765    rs141876723    G    GT    371.61    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.205;DB;DP=46;FS=0.0;HRun=11;HaplotypeScore=182.74;IndelType=I;MQ=26.77;MQ0=9;MQRankSum=-0.707;QD=6.3;ReadPosRankSum=-1.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:26,16:46:99:411,0,262
19    12543866    rs138105074    A    G    688.39    MQFilter40    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.194;DB;DP=239;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.94;MQ0=55;MQRankSum=-0.03;QD=2.88;ReadPosRankSum=-0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:180,59:239:99:718,0,2814
19    12544238    rs4804695    G    A    33.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=11.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
19    12544244    rs4804696    G    A    31.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=0.736;QD=10.49;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:61,0,31
19    12551671    rs11878378    G    T    198.51    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=11;Dels=0.0;FS=5.229;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.118;QD=18.05;ReadPosRankSum=0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:2,9:11:34.87:228,0,35
19    12551715    rs11881297    A    C    446.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:480,36,0
19    12551729    rs62110751    T    A    282.71    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.93;QD=21.75;ReadPosRankSum=-1.944;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_12551726_12551926;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    0/1:3,10:13:75.51:313,0,76
19    12551789    rs3745658    A    C    217.81    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=1.393;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9987;MQ=58.29;MQ0=0;MQRankSum=-1.741;QD=19.8;ReadPosRankSum=-1.044;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411622    GT:AD:DP:GQ:PL    0/1:1,9:11:10.28:248,0,10
19    12551946    rs3745656    C    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF443;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301547    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    12576049    rs7259240    G    A    931.71    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=2.526;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6316;MQ=59.65;MQ0=0;MQRankSum=-1.397;QD=14.12;ReadPosRankSum=-3.143;SNPEFF_AMINO_ACID_CHANGE=C229;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12572373_12576547;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2192J16.17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428311    GT:AD:DP:GQ:PL    0/1:34,32:66:99:962,0,992
19    12576573    rs10404972    G    A    184.08    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=14.16;ReadPosRankSum=1.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2192J16.17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428311    GT:AD:DP:GQ:PL    0/1:6,7:13:99:214,0,200
19    12577723    rs8100400    A    T    2827.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.94;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2192J16.17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428311    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2860,223,0
19    12577865    rs8113309    G    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2192J16.17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428311    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
19    12638887    rs6511824    T    C    162.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2192J16.17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428311    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:196,18,0
19    12691185    rs7247513    C    T    247.13    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.984;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.039;QD=10.74;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF490;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414906    GT:AD:DP:GQ:PL    0/1:14,9:23:99:277,0,510
19    12692001    rs3745651    G    A    598.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.81;DB;DP=50;Dels=0.0;FS=1.127;HRun=0;HaplotypeScore=1.578;MQ=59.54;MQ0=0;MQRankSum=0.93;QD=11.97;ReadPosRankSum=-0.63;SNPEFF_AMINO_ACID_CHANGE=H296;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12688775_12692538;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF490;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311437    GT:AD:DP:GQ:PL    0/1:25,25:50:99:628,0,691
19    12707904    rs1864082    T    C    141.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.803;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=6.76;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF490;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311437    GT:AD:DP:GQ:PL    0/1:12,9:21:99:172,0,332
19    12707978    rs1864081    G    A    283.71    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=23;Dels=0.0;FS=3.796;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.341;QD=12.34;ReadPosRankSum=2.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF490;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311437    GT:AD:DP:GQ:PL    0/1:13,10:23:99:314,0,394
19    12734297    rs8107539    A    T    69.92    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.99;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF791;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343325    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,148
19    12738397    rs8109922    A    G    436.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF791;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343325    GT:AD:DP:GQ:PL    1/1:0,15:15:42.09:469,42,0
19    12754003    rs113758073    GT    G    187.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=19;FS=8.751;HRun=14;HaplotypeScore=104.8974;IndelType=D;MQ=46.72;MQ0=0;MQRankSum=-1.504;QD=9.4;ReadPosRankSum=-1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221363    GT:AD:DP:GQ:PL    1/1:6,12:19:14.41:230,14,0
19    12754129    rs8110264    T    C    627.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.79;MQ0=4;QD=24.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221363    GT:AD:DP:GQ:PL    1/1:0,26:26:57.14:661,57,0
19    12754137    rs8107354    A    G    514.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.48;MQ0=5;QD=21.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221363    GT:AD:DP:GQ:PL    1/1:0,24:24:48.12:548,48,0
19    12754898    rs8110545    C    T    139.36    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.89;MQ0=0;MQRankSum=-1.159;QD=15.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221363    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,100
19    12760664    rs3815914    T    C    491.24    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.942;DB;DP=34;Dels=0.0;FS=3.081;HRun=3;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.347;QD=14.45;ReadPosRankSum=-1.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221363    GT:AD:DP:GQ:PL    0/1:15,19:34:99:521,0,531
19    12762783    rs17476839    T    C    110.84    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.17;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495617    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:141,0,28
19    12766370    rs8107642    G    A    351.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.523;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.959;QD=16.73;ReadPosRankSum=-1.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465830    GT:AD:DP:GQ:PL    0/1:9,12:21:99:381,0,315
19    12768843    rs34324185    G    T    232.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.892;DB;DP=17;Dels=0.0;FS=4.593;HRun=0;HaplotypeScore=0.0;MQ=48.39;MQ0=0;MQRankSum=1.222;QD=13.66;ReadPosRankSum=0.225;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462144    GT:AD:DP:GQ:PL    0/1:6,10:17:99:262,0,174
19    12772090    rs1133330    C    T    744.61    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=61;Dels=0.0;FS=5.125;HRun=0;HaplotypeScore=1.8237;MQ=60.0;MQ0=0;MQRankSum=0.213;QD=12.21;ReadPosRankSum=0.785;SNPEFF_AMINO_ACID_CHANGE=R276Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12772074_12772190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536796    GT:AD:DP:GQ:PL    0/1:36,25:61:99:775,0,1124
19    12772165    rs1054487    G    A    651.77    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.672;DB;DP=61;Dels=0.0;FS=1.017;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.69;QD=10.68;ReadPosRankSum=0.524;SNPEFF_AMINO_ACID_CHANGE=T251I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12772074_12772190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536796    GT:AD:DP:GQ:PL    0/1:37,24:61:99:682,0,1143
19    12772263    rs2303731    T    C    248.26    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.059;DB;DP=16;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=0.953;QD=15.52;ReadPosRankSum=-0.847;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486847    GT:AD:DP:GQ:PL    0/1:7,9:16:99:278,0,230
19    12774208    rs1054486    G    C    722.78    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=0.693;DB;DP=47;Dels=0.0;FS=1.286;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=15.38;ReadPosRankSum=0.297;SNPEFF_AMINO_ACID_CHANGE=L217V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12774131_12774276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MAN2B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536796    GT:AD:DP:GQ:PL    0/1:23,24:47:99:753,0,649
19    12780204    rs117131055    T    C    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=1.026;SNPEFF_AMINO_ACID_CHANGE=N5S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12780168_12780465;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222190    GT:AD:DP:GQ:PL    0/1:2,2:4:65.45:71,0,65
19    12800345    .    G    A    352.38    PASS    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5281;MQ=55.86;MQ0=0;MQRankSum=-0.039;QD=15.32;ReadPosRankSum=0.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380339    GT:AD:DP:GQ:PL    0/1:6,17:23:99:382,0,184
19    12805424    rs117566511    C    T    250.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.692;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.707;QD=11.39;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=R221Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12805408_12805536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXW9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380339    GT:AD:DP:GQ:PL    0/1:11,11:22:99:281,0,335
19    12857836    rs8100505    A    G    38.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=6.41;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASNA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357332    GT:AD:DP:GQ:PL    0/1:3,3:6:68.45:68,0,83
19    12876278    rs1205169    C    A    294.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOOK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264827    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
19    12876964    rs897804    G    C    105.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.5;MQ0=0;MQRankSum=0.0;QD=8.79;ReadPosRankSum=-1.307;SNPEFF_AMINO_ACID_CHANGE=H488Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12876917_12877054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOOK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000264827    GT:AD:DP:GQ:PL    0/1:6,6:12:99:135,0,104
19    12923725    rs3786712    A    G    30.55    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.11;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNASEH2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221486    GT:AD:DP:GQ:PL    0/1:3,2:5:60.54:61,0,104
19    12939792    rs1466306    T    C    450.81    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.552;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.381;QD=18.78;ReadPosRankSum=2.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTBDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322912    GT:AD:DP:GQ:PL    0/1:10,14:24:99:481,0,320
19    12945415    rs118145687    C    A    75.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.57;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTBDN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322912    GT:AD:DP:GQ:PL    0/1:3,3:6:66.53:105,0,67
19    12978655    rs56114354    C    T    32.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.55;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=P810;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_12978544_12978791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251472    GT:AD:DP:GQ:PL    0/1:3,2:5:62.75:63,0,109
19    13002033    rs7251834    A    G    125.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222214    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
19    13002400    rs1799918    G    C    307.46    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=40;Dels=0.0;FS=1.958;HRun=0;HaplotypeScore=1.5317;MQ=59.42;MQ0=0;MQRankSum=1.282;QD=7.69;ReadPosRankSum=1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222214    GT:AD:DP:GQ:PL    0/1:21,19:40:99:337,0,646
19    13002563    rs2242517    T    G    334.98    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.179;DB;DP=31;Dels=0.0;FS=5.846;HRun=6;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=-1.012;QD=10.81;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222214    GT:AD:DP:GQ:PL    0/1:14,17:31:99:365,0,385
19    13006685    rs2238641    T    C    291.85    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.86;QD=11.67;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293695    GT:AD:DP:GQ:PL    0/1:15,10:25:99:322,0,551
19    13006687    rs12151303    G    A    296.59    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.128;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.519;QD=11.41;ReadPosRankSum=-0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293695    GT:AD:DP:GQ:PL    0/1:15,11:26:99:327,0,551
19    13008607    rs1060218    G    T    922.50    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.551;DB;DP=73;Dels=0.0;FS=1.715;HRun=0;HaplotypeScore=0.7887;MQ=59.05;MQ0=0;MQRankSum=0.921;QD=12.64;ReadPosRankSum=-0.899;SNPEFF_AMINO_ACID_CHANGE=G347;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_13008517_13008677;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422947    GT:AD:DP:GQ:PL    0/1:36,37:73:99:952,0,1189
19    13010520    rs8012    A    G    516.65    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.054;DB;DP=41;Dels=0.0;FS=2.78;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.406;QD=12.6;ReadPosRankSum=-1.056;SNPEFF_AMINO_ACID_CHANGE=Q417R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_13010514_13010782;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457854    GT:AD:DP:GQ:PL    0/1:20,21:41:99:547,0,540
19    13010643    rs9384    G    T    84.81    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.893;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.196;QD=5.65;ReadPosRankSum=-0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421816    GT:AD:DP:GQ:PL    0/1:11,4:15:99:115,0,374
19    13015530    rs17706531    A    G    697.43    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=51;Dels=0.0;FS=10.643;HRun=2;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;MQRankSum=-0.05;QD=13.68;ReadPosRankSum=-1.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222214    GT:AD:DP:GQ:PL    0/1:23,27:51:99:727,0,648
19    13029188    rs2965214    G    A    388.41    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.577;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.558;QD=14.39;ReadPosRankSum=0.218;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314606    GT:AD:DP:GQ:PL    0/1:14,13:27:99:418,0,492
19    13039284    rs2293683    A    G    454.57    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=35;Dels=0.0;FS=8.183;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.017;QD=12.99;ReadPosRankSum=-0.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FARSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314606    GT:AD:DP:GQ:PL    0/1:18,17:35:99:485,0,558
19    13054781    rs1049481    G    T    152.42    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=13.86;ReadPosRankSum=0.278;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD23A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316856    GT:AD:DP:GQ:PL    0/1:4,7:11:99:182,0,132
19    13211330    rs190048626    C    G    531.86    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.466;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.39;MQ0=0;MQRankSum=-0.176;QD=14.0;ReadPosRankSum=2.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFIX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264825    GT:AD:DP:GQ:PL    0/1:21,17:38:99:562,0,762
19    13220703    rs35601737    C    G    368.44    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.527;DB;DP=44;Dels=0.0;FS=4.642;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.713;QD=8.19;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221504    GT:AD:DP:GQ:PL    0/1:29,15:44:99:398,0,772
19    13226900    rs74437885    C    A    550.10    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.493;DB;DP=57;Dels=0.0;FS=4.267;HRun=0;HaplotypeScore=2.559;MQ=59.19;MQ0=0;MQRankSum=2.689;QD=9.65;ReadPosRankSum=-0.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221504    GT:AD:DP:GQ:PL    0/1:32,25:57:99:580,0,842
19    13248856    rs12981904    T    C    183.90    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=16;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=11.49;ReadPosRankSum=1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292431    GT:AD:DP:GQ:PL    0/1:9,7:16:99:214,0,315
19    13249244    rs8112067    A    G    181.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4925;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=7.27;ReadPosRankSum=0.807;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292431    GT:AD:DP:GQ:PL    0/1:16,8:25:99:212,0,491
19    13255536    rs2304095    T    C    158.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.299;DB;DP=14;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.524;QD=11.32;ReadPosRankSum=-0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NACC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292431    GT:AD:DP:GQ:PL    0/1:7,7:14:99:188,0,227
19    13319989    rs10413221    T    C    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
19    13324818    rs892018    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    13324862    rs892017    C    T    131.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
19    13335432    rs3816027    G    A    34.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.75;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:2,2:4:64.97:65,0,66
19    13338180    rs143245670    AAAG    A    170.49    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=3.049;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=99.0318;IndelType=D;MQ=59.07;MQ0=0;MQRankSum=-0.127;QD=6.82;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:18,7:25:99:210,0,911
19    13339673    rs17846918    G    A    210.08    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=15;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.174;QD=14.01;ReadPosRankSum=2.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:8,7:15:99:240,0,251
19    13345657    rs3765012    C    A    647.29    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.246;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.633;QD=13.21;ReadPosRankSum=0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:27,22:49:99:677,0,917
19    13355900    rs16039    T    G    300.34    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.975;DB;DP=26;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.028;QD=11.55;ReadPosRankSum=0.764;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445042    GT:AD:DP:GQ:PL    0/1:16,10:26:99:330,0,552
19    13368031    rs4926242    T    C    209.56    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=17.46;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:5,7:12:99:240,0,156
19    13373477    rs16031    A    G    352.54    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.023;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.602;QD=12.59;ReadPosRankSum=0.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:16,12:28:99:383,0,518
19    13386860    rs7257254    C    T    150.15    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8665;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=18.77;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:2,6:8:47.83:180,0,48
19    13395726    rs10422305    C    T    70.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=14.14;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:1,4:5:30.61:101,0,31
19    13397945    rs12975522    T    C    154.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=15.44;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:4,6:10:99:184,0,139
19    13410235    rs12985136    G    T    1510.57    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.989;DB;DP=109;Dels=0.0;FS=3.572;HRun=0;HaplotypeScore=0.0;MQ=58.94;MQ0=0;MQRankSum=-0.035;QD=13.86;ReadPosRankSum=-1.874;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:55,53:109:99:1541,0,1634
19    13411482    rs16018    G    A    2440.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2474,184,0
19    13414594    rs16016    C    T    1803.68    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.067;DB;DP=122;Dels=0.0;FS=6.345;HRun=0;HaplotypeScore=2.8993;MQ=59.81;MQ0=0;MQRankSum=-2.529;QD=14.78;ReadPosRankSum=-0.419;SNPEFF_AMINO_ACID_CHANGE=T697;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_13414581_13414698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360228    GT:AD:DP:GQ:PL    0/1:55,67:122:99:1834,0,1639
19    13414796    rs4926263    G    A    1169.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,31:32:93.26:1203,93,0
19    13418707    rs16015    C    T    779.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.607;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.496;MQ=58.0;MQ0=0;MQRankSum=-0.594;QD=14.44;ReadPosRankSum=-0.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:27,27:54:99:810,0,728
19    13428124    rs41276886    C    T    695.73    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=3.464;DB;DP=39;Dels=0.0;FS=4.31;HRun=0;HaplotypeScore=0.9734;MQ=59.41;MQ0=0;MQRankSum=-1.673;QD=17.84;ReadPosRankSum=0.147;SNPEFF_AMINO_ACID_CHANGE=A453T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_13427926_13428135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360228    GT:AD:DP:GQ:PL    0/1:18,21:39:99:726,0,435
19    13443770    rs16008    T    C    1259.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=29.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1292,102,0
19    13445144    rs2306348    C    T    1648.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1681,123,0
19    13445208    rs2248069    C    T    3416.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=35.58;SNPEFF_AMINO_ACID_CHANGE=E394;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_13445192_13445307;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3416,253,0
19    13446438    rs74183012    C    T    109.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=15.66;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,103
19    13476394    rs1871470    T    C    246.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
19    13563857    rs55839906    G    A    1846.55    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.36;DB;DP=114;Dels=0.0;FS=2.979;HRun=0;HaplotypeScore=1.6988;MQ=59.6;MQ0=0;MQRankSum=0.06;QD=16.06;ReadPosRankSum=-1.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    0/1:54,60:114:99:1877,0,1680
19    13616693    rs16003    C    T    873.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=29.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325084    GT:AD:DP:GQ:PL    1/1:0,30:30:75.21:907,75,0
19    13865070    rs378189    C    T    499.08    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.99;MQ0=0;MQRankSum=-1.062;QD=10.85;ReadPosRankSum=-0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221554    GT:AD:DP:GQ:PL    0/1:26,20:46:99:529,0,801
19    13866793    rs392725    A    G    36.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.29;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221554    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:67,0,34
19    13866866    rs417186    T    G    31.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=4.47;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221554    GT:AD:DP:GQ:PL    0/1:4,3:7:61.26:61,0,146
19    13866957    rs2910225    T    C    301.73    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.764;DB;DP=26;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=1.8154;MQ=59.11;MQ0=0;MQRankSum=0.501;QD=11.6;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221554    GT:AD:DP:GQ:PL    0/1:16,10:26:99:332,0,490
19    13868117    rs693151    A    G    176.28    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=19.59;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC130;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221554    GT:AD:DP:GQ:PL    0/1:2,7:9:57.40:206,0,57
19    13940838    rs10411270    T    A    107.30    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=13.41;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254323    GT:AD:DP:GQ:PL    0/1:3,5:8:95.73:137,0,96
19    13940959    rs10403445    G    C    648.85    PASS    AB=0.185;AC=1;AF=0.50;AN=2;BaseQRankSum=2.528;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.217;QD=24.03;ReadPosRankSum=-1.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254323    GT:AD:DP:GQ:PL    0/1:5,22:27:99:679,0,120
19    13947292    rs895819    T    C    188.23    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.34;MQ0=0;MQRankSum=-0.295;QD=11.76;ReadPosRankSum=-0.648;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254323    GT:AD:DP:GQ:PL    0/1:6,9:16:99:218,0,156
19    13987855    rs149586075    C    G    203.22    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3548;MQ=58.55;MQ0=0;MQRankSum=-0.953;QD=12.7;ReadPosRankSum=1.059;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339133    GT:AD:DP:GQ:PL    0/1:7,9:16:99:233,0,183
19    14038590    rs112839524    A    G    577.45    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.392;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8644;MQ=55.1;MQ0=0;MQRankSum=0.23;QD=13.12;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397486    GT:AD:DP:GQ:PL    0/1:21,22:44:99:607,0,605
19    14038791    rs2305777    C    T    1071.24    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=4.882;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9962;MQ=57.5;MQ0=0;MQRankSum=1.241;QD=14.28;ReadPosRankSum=-0.513;SNPEFF_AMINO_ACID_CHANGE=T424M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14038706_14038843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CC2D1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254346    GT:AD:DP:GQ:PL    0/1:38,37:75:99:1101,0,960
19    14162676    rs2306190    A    C    157.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340790    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:191,15,0
19    14165204    rs75389771    G    C    624.42    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.529;DB;DP=33;Dels=0.0;FS=8.039;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.313;QD=18.92;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=T412R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14164179_14166038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340790    GT:AD:DP:GQ:PL    0/1:13,20:33:99:654,0,434
19    14165278    rs56202530    G    A    285.94    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.422;DB;DP=35;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-0.153;QD=8.17;ReadPosRankSum=-0.844;SNPEFF_AMINO_ACID_CHANGE=G387;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14164179_14166038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PALM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340790    GT:AD:DP:GQ:PL    0/1:20,14:35:99:316,0,574
19    14194458    rs35357458    C    A    112.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.55;QD=14.03;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269724    GT:AD:DP:GQ:PL    0/1:4,4:8:83.88:142,0,84
19    14204197    .    C    T    33.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.54;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536649    GT:AD:DP:GQ:PL    0/1:4,2:6:63.24:63,0,128
19    14218020    rs41296260    A    T    1027.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKACA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308677    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1061,78,0
19    14231256    rs3745463    T    C    107.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.181;QD=8.98;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474890    GT:AD:DP:GQ:PL    0/1:6,6:12:99:138,0,218
19    14492219    rs28366013    C    A    72.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=9.04;ReadPosRankSum=0.421;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_14492213_14492357;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:4,4:8:99:102,0,146
19    14499357    rs2302094    T    A    537.63    MQFilter40    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=44;Dels=0.0;FS=5.684;HRun=0;HaplotypeScore=0.0;MQ=31.69;MQ0=17;MQRankSum=0.733;QD=12.22;ReadPosRankSum=-0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:12,32:44:22.84:568,0,23
19    14499410    rs2302092    G    C    1118.85    PASS    AB=0.157;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.258;DB;DP=51;Dels=0.0;FS=18.514;HRun=1;HaplotypeScore=0.9578;MQ=52.45;MQ0=0;MQRankSum=4.152;QD=21.94;ReadPosRankSum=-0.798;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:8,43:51:92.01:1149,0,92
19    14507102    .    T    C    62.07    QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=0.569;DP=74;Dels=0.0;FS=7.194;HRun=3;HaplotypeScore=1.5362;MQ=52.06;MQ0=4;MQRankSum=-5.119;QD=0.84;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:58,16:74:92.06:92,0,1838
19    14507307    rs62122581    C    T    210.07    PASS    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DB;DP=43;Dels=0.0;FS=1.582;HRun=0;HaplotypeScore=1.8808;MQ=55.76;MQ0=1;MQRankSum=-2.35;QD=4.89;ReadPosRankSum=1.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:33,10:43:99:240,0,845
19    14507342    rs62122582    G    T    51.57    QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=37;Dels=0.0;FS=5.281;HRun=0;HaplotypeScore=1.873;MQ=55.1;MQ0=1;MQRankSum=-3.32;QD=1.39;ReadPosRankSum=-1.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:29,8:37:81.56:82,0,898
19    14507345    rs62122583    C    G    51.70    QDFilter2    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=1.748;DB;DP=37;Dels=0.0;FS=5.281;HRun=1;HaplotypeScore=1.873;MQ=55.1;MQ0=1;MQRankSum=-3.162;QD=1.4;ReadPosRankSum=-1.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:28,9:37:81.69:82,0,780
19    14508223    rs10412108    A    G    54.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=49.6;MQ0=0;MQRankSum=-1.537;QD=9.01;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:3,3:6:84.05:84,0,104
19    14508385    rs10410071    G    A    176.97    MQFilter40    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DB;DP=22;Dels=0.0;FS=4.191;HRun=0;HaplotypeScore=0.0;MQ=38.19;MQ0=0;MQRankSum=0.801;QD=8.04;ReadPosRankSum=-1.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:13,9:22:99:207,0,371
19    14508964    rs7508244    T    C    532.96    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.308;DB;DP=53;Dels=0.0;FS=11.61;HRun=0;HaplotypeScore=0.734;MQ=55.63;MQ0=0;MQRankSum=-1.734;QD=10.06;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:31,22:53:99:563,0,871
19    14522434    rs3217231    GCCTTA    G    410.18    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.573;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=88.1747;IndelType=D;MQ=54.69;MQ0=0;MQRankSum=-0.473;QD=25.64;ReadPosRankSum=-2.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:8,8:16:99:449,0,675
19    14524126    rs12985089    T    C    166.01    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=20.75;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD97;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242786    GT:AD:DP:GQ:PL    0/1:2,6:8:59.92:196,0,60
19    14561722    rs8107892    A    G    498.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.15;SNPEFF_AMINO_ACID_CHANGE=L257;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14561708_14561921;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242783    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:531,39,0
19    14568691    rs112483471    C    T    743.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242783    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:777,60,0
19    14575146    rs8113783    T    A    93.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242783    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
19    14578354    rs34422078    C    G    802.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292513    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:835,63,0
19    14580869    rs34241778    GC    G    1469.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=6;HaplotypeScore=134.4392;IndelType=D;MQ=61.88;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292513    GT:AD:DP:GQ:PL    1/1:4,47:51:99:1511,141,0
19    14582539    rs8598    C    T    207.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_AMINO_ACID_CHANGE=L924;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14582393_14582671;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000242783    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
19    14583264    rs2241363    G    C    147.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=29.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000242783    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:180,15,0
19    14583582    rs11668633    C    T    73.22    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=12.2;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=L333;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14583278_14583638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGER1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292513    GT:AD:DP:GQ:PL    0/1:1,5:6:28.61:103,0,29
19    14589378    rs1127307    C    T    2014.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_AMINO_ACID_CHANGE=A187;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14588572_14589379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393028    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2047,153,0
19    14591154    .    G    A    206.76    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.87;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.08;QD=7.95;ReadPosRankSum=0.132;SNPEFF_AMINO_ACID_CHANGE=T109;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14591117_14591297;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393028    GT:AD:DP:GQ:PL    0/1:16,10:26:99:237,0,479
19    14591737    rs2420536    A    G    90.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345425    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    14593341    rs10401146    G    A    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345425    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
19    14627050    rs4926222    G    A    597.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254322    GT:AD:DP:GQ:PL    1/1:0,17:17:51.14:630,51,0
19    14674235    rs891089    C    T    123.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215565    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
19    14676172    rs12976927    T    A    731.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215565    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:764,57,0
19    14676401    rs117034679    C    T    249.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215565    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
19    14682804    rs9543    G    C    153.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.92;SNPEFF_AMINO_ACID_CHANGE=A3;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14682701_14682886;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFB7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215565    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:186,15,0
19    14698416    rs138728953    C    A    59.01    MQFilter40;QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.462;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.43;MQ0=33;MQRankSum=-0.452;QD=1.16;ReadPosRankSum=0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397439    GT:AD:DP:GQ:PL    0/1:42,9:51:89.01:89,0,240
19    14707577    rs73002873    A    G    116.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.191;QD=8.95;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397439    GT:AD:DP:GQ:PL    0/1:6,6:13:99:146,0,217
19    14708144    rs11878770    T    C    57.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=9.64;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397439    GT:AD:DP:GQ:PL    0/1:2,4:6:50.42:88,0,50
19    14721019    rs6511944    C    T    310.98    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.066;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.022;QD=14.14;ReadPosRankSum=0.626;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLEC17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339847    GT:AD:DP:GQ:PL    0/1:12,10:22:99:341,0,350
19    14743902    rs2045912    C    T    313.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:346,27,0
19    14744181    rs899217    T    A    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
19    14752325    rs8102646    C    T    785.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.6;MQ0=0;QD=27.07;SNPEFF_AMINO_ACID_CHANGE=R259Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14752231_14752428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443157    GT:AD:DP:GQ:PL    1/1:0,29:29:66.19:818,66,0
19    14758168    rs34226397    G    A    600.61    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.061;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4884;MQ=55.75;MQ0=0;MQRankSum=1.889;QD=9.1;ReadPosRankSum=-0.776;SNPEFF_AMINO_ACID_CHANGE=A110V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14757993_14758177;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443157    GT:AD:DP:GQ:PL    0/1:41,25:66:99:631,0,1196
19    14762156    rs34562990    A    C    95.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=13.66;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    0/1:3,4:7:99:126,0,100
19    14762169    rs11670964    C    T    54.90    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=6.1;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    0/1:6,3:9:84.89:85,0,223
19    14766144    rs8106222    C    G    65.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.14;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    0/1:2,3:5:52.29:96,0,52
19    14769339    rs4606855    C    G    680.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.64;MQ0=0;QD=26.15;SNPEFF_AMINO_ACID_CHANGE=E127Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14769325_14769362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    1/1:0,26:26:51.17:713,51,0
19    14769498    rs8100314    C    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    14772625    rs4328571    T    C    71.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.92;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,104
19    14772984    rs8111916    G    T    143.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=14.35;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    0/1:5,5:10:99:173,0,173
19    14773022    rs8102148    T    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:75,0,34
19    14779550    rs4239642    C    A    1137.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=36.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253673    GT:AD:DP:GQ:PL    1/1:0,30:31:90.29:1170,90,0
19    14804183    rs10407394    A    G    96.94    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.77;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,175
19    14805604    rs3850140    T    C    172.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
19    14805719    rs3850141    T    C    808.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.07;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,25:25:63.18:841,63,0
19    14806017    rs3813144    G    C    261.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:294,21,0
19    14810261    rs6511958    A    T    154.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:187,15,0
19    14815753    rs34156991    C    A    156.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.936;DB;DP=14;Dels=0.0;FS=2.246;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=11.2;ReadPosRankSum=1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    0/1:7,7:14:99:187,0,212
19    14815804    rs35325242    C    T    340.53    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.645;DB;DP=28;Dels=0.0;FS=3.771;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.599;QD=12.16;ReadPosRankSum=-1.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    0/1:15,13:28:99:371,0,509
19    14817062    rs4808319    G    A    754.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,22:22:60.16:788,60,0
19    14817145    rs4809215    G    T    173.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:206,15,0
19    14817548    rs6511961    T    A    1279.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.59;SNPEFF_AMINO_ACID_CHANGE=T158;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14817498_14817585;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1313,99,0
19    14826849    rs4078586    T    C    945.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=30.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,31:31:75.23:978,75,0
19    14828832    rs7245462    T    C    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292530    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
19    14829749    rs3764626    C    T    622.45    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=35;Dels=0.0;FS=11.24;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.01;QD=17.78;ReadPosRankSum=1.97;SNPEFF_AMINO_ACID_CHANGE=A428V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14829040_14830546;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF333;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536363    GT:AD:DP:GQ:PL    0/1:16,19:35:99:652,0,455
19    14846861    rs1064103    A    G    78.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.568;QD=7.88;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392965    GT:AD:DP:GQ:PL    0/1:6,4:10:99:109,0,213
19    14846897    rs1859257    T    A    625.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392965    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:659,48,0
19    14856949    rs2732788    C    A    813.95    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.969;DB;DP=66;Dels=0.0;FS=3.144;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.507;QD=12.33;ReadPosRankSum=-1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:34,32:66:99:844,0,1205
19    14857179    rs1029476    T    C    300.52    HaplotypeScoreFilter13    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.27;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=26.0592;MQ=54.25;MQ0=0;MQRankSum=-0.019;QD=4.85;ReadPosRankSum=-0.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:33,29:62:99:331,0,768
19    14857187    rs34368264    C    CT    187.95    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.046;DB;DP=51;FS=0.0;HRun=15;HaplotypeScore=439.7991;IndelType=I;MQ=52.9;MQ0=0;MQRankSum=-1.75;QD=3.69;ReadPosRankSum=-1.843;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:37,11:51:99:227,0,112
19    14857202    rs67145758    T    C    313.30    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.535;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=51.91;MQ0=0;MQRankSum=1.055;QD=8.7;ReadPosRankSum=1.963;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:22,14:36:99:343,0,117
19    14857791    rs34186967    T    TA    138.72    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=27.043;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=12.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392962    GT:AD:DP:GQ:PL    0/1:5,6:11:79.80:178,0,80
19    14862430    rs2524383    C    G    1798.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_AMINO_ACID_CHANGE=L472F;SNPEFF_CODON_CHANGE=ttG/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14862248_14862483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353005    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1832,135,0
19    14862517    rs3752189    A    G    274.64    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.518;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.308;QD=10.17;ReadPosRankSum=1.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:16,11:27:99:305,0,534
19    14862555    rs2524384    T    A    253.58    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=19.51;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:5,8:13:99:284,0,166
19    14865684    rs34312411    A    AT    496.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=7;HaplotypeScore=83.0298;IndelType=I;MQ=61.34;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    1/1:1,14:15:45.14:538,45,0
19    14865704    rs2058107    C    T    795.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.94;MQ0=0;QD=37.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:829,60,0
19    14866390    rs34617107    C    T    700.18    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.362;DB;DP=48;Dels=0.0;FS=4.59;HRun=0;HaplotypeScore=0.9998;MQ=59.52;MQ0=0;MQRankSum=-0.516;QD=14.59;ReadPosRankSum=0.764;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:23,25:48:99:730,0,794
19    14866698    rs28420691    C    T    253.86    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.127;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.107;QD=14.93;ReadPosRankSum=1.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:9,8:17:99:284,0,205
19    14866974    rs2253472    T    C    285.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:319,24,0
19    14867186    rs2524386    G    A    535.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:568,45,0
19    14875201    rs7253782    G    T    656.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    1/1:0,19:21:51.17:690,51,0
19    14875917    rs3795033    T    C    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=9.93;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:70,0,69
19    14877043    rs2074892    C    T    858.78    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8315;MQ=51.52;MQ0=1;MQRankSum=0.254;QD=9.87;ReadPosRankSum=0.539;SNPEFF_AMINO_ACID_CHANGE=R213Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14876470_14877193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360222    GT:AD:DP:GQ:PL    0/1:51,36:87:99:889,0,1450
19    14877947    rs11672806    A    G    329.79    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=50;Dels=0.0;FS=18.138;HRun=1;HaplotypeScore=4.129;MQ=51.24;MQ0=2;MQRankSum=-5.489;QD=6.6;ReadPosRankSum=0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:33,17:50:99:360,0,1034
19    14878003    rs7256892    C    T    195.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.318;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.43;MQ0=0;MQRankSum=-4.026;QD=6.99;ReadPosRankSum=0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:16,12:28:99:226,0,427
19    14878054    rs71333312    CT    C    86.01    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.111;DB;DP=25;FS=0.0;HRun=14;HaplotypeScore=109.55;IndelType=D;MQ=48.2;MQ0=0;MQRankSum=-3.599;QD=3.31;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:16,10:25:99:125,0,165
19    14884946    rs2302090    A    G    144.49    MQFilter40    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.498;DB;DP=38;Dels=0.0;FS=14.784;HRun=1;HaplotypeScore=0.0;MQ=39.78;MQ0=8;MQRankSum=-3.439;QD=3.8;ReadPosRankSum=0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:21,17:38:99:174,0,653
19    14884965    rs28492070    A    G    35.66    QDFilter2    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.335;DB;DP=30;Dels=0.0;FS=5.959;HRun=0;HaplotypeScore=0.0;MQ=41.36;MQ0=6;MQRankSum=-3.391;QD=1.19;ReadPosRankSum=0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315576    GT:AD:DP:GQ:PL    0/1:18,11:30:65.66:66,0,605
19    14910438    rs10415312    C    T    3716.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=E171K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14909958_14911023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248073    GT:AD:DP:GQ:PL    1/1:0,107:107:99:3716,280,0
19    14910573    rs10415562    C    T    1818.74    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=3.096;DB;DP=106;Dels=0.0;FS=6.531;HRun=0;HaplotypeScore=1.6006;MQ=59.61;MQ0=0;MQRankSum=1.369;QD=17.16;ReadPosRankSum=2.484;SNPEFF_AMINO_ACID_CHANGE=V126I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14909958_14911023;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7C1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248073    GT:AD:DP:GQ:PL    0/1:47,59:106:99:1849,0,1256
19    14951680    rs3752193    C    T    73.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.44;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248058    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,143
19    14974930    rs10407452    G    A    1189.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.173;DB;DP=112;Dels=0.0;FS=10.875;HRun=0;HaplotypeScore=1.9203;MQ=59.25;MQ0=0;MQRankSum=-0.003;QD=10.62;ReadPosRankSum=-0.809;SNPEFF_AMINO_ACID_CHANGE=H200Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14974598_14975527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A2P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304105    GT:AD:DP:GQ:PL    0/1:64,48:112:99:1220,0,2155
19    14975040    rs10407682    G    A    1120.22    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=88;Dels=0.0;FS=1.812;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=0.491;QD=12.73;ReadPosRankSum=0.201;SNPEFF_AMINO_ACID_CHANGE=T163I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14974598_14975527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A2P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304105    GT:AD:DP:GQ:PL    0/1:49,39:88:99:1150,0,1679
19    14975368    rs10415965    A    G    1629.57    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.785;DB;DP=132;Dels=0.0;FS=2.254;HRun=2;HaplotypeScore=0.8941;MQ=59.69;MQ0=0;MQRankSum=-1.506;QD=12.35;ReadPosRankSum=-1.414;SNPEFF_AMINO_ACID_CHANGE=C54R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14974598_14975527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A2P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304105    GT:AD:DP:GQ:PL    0/1:72,60:132:99:1660,0,2434
19    14975427    rs10416150    A    G    1591.97    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.124;DB;DP=124;Dels=0.0;FS=5.933;HRun=0;HaplotypeScore=3.9933;MQ=59.49;MQ0=0;MQRankSum=0.464;QD=12.84;ReadPosRankSum=0.561;SNPEFF_AMINO_ACID_CHANGE=M34T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14974598_14975527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A2P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304105    GT:AD:DP:GQ:PL    0/1:65,59:124:99:1622,0,2020
19    14975471    rs11085912    C    T    1217.02    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=110;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5518;MQ=59.83;MQ0=0;MQRankSum=-1.516;QD=11.06;ReadPosRankSum=-0.462;SNPEFF_AMINO_ACID_CHANGE=E19;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14974598_14975527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A2P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304105    GT:AD:DP:GQ:PL    0/1:59,51:110:99:1247,0,1879
19    14975544    rs10415572    C    A    845.28    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.142;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.23;MQ0=0;MQRankSum=-0.428;QD=14.57;ReadPosRankSum=0.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304105    GT:AD:DP:GQ:PL    0/1:25,33:58:99:875,0,826
19    14975693    rs11085913    T    A    40.53    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.51;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A2P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304105    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:71,0,33
19    14991643    rs10401818    G    A    1484.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.126;DB;DP=90;Dels=0.0;FS=4.017;HRun=0;HaplotypeScore=0.9894;MQ=59.74;MQ0=0;MQRankSum=1.985;QD=16.5;ReadPosRankSum=0.499;SNPEFF_AMINO_ACID_CHANGE=P175;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_14991138_14992264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327462    GT:AD:DP:GQ:PL    0/1:40,50:90:99:1515,0,1300
19    14992178    rs60445901    C    CTATT    312.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=83.0495;IndelType=I;MQ=59.38;MQ0=0;QD=14.22;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_14991138_14992264;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7A17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327462    GT:AD:DP:GQ:PL    1/1:17,5:22:15.05:355,15,0
19    15014719    rs4134457    A    G    6337.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,176:176:99:6338,469,0
19    15015059    rs10424071    T    C    1655.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1688,129,0
19    15038095    rs1811200    T    C    6176.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=197;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449848    GT:AD:DP:GQ:PL    1/1:0,197:197:99:6176,478,0
19    15038355    rs4808693    G    T    4909.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.5017;MQ=59.68;MQ0=0;QD=34.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449848    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4909,376,0
19    15038586    rs4808694    T    C    2005.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7264;MQ=59.16;MQ0=0;MQRankSum=-0.661;QD=36.47;ReadPosRankSum=-0.094;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449848    GT:AD:DP:GQ:PL    1/1:1,54:55:99:2039,129,0
19    15038650    rs1985557    G    A    3004.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=59.73;MQ0=0;QD=34.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449848    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3037,226,0
19    15038754    rs2366860    G    T    3872.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=35.21;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449848    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3873,283,0
19    15038939    rs7253786    A    C    330.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.81;MQ0=0;QD=25.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=OR7A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449848    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:364,30,0
19    15052983    rs3044711    T    TATC    3671.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.0;HRun=0;HaplotypeScore=184.3649;IndelType=I;MQ=53.19;MQ0=0;QD=64.42;SNPEFF_AMINO_ACID_CHANGE=V228VS;SNPEFF_CODON_CHANGE=gta/gtATCa;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_19_15052301_15053260;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR7C2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248072    GT:AD:DP:GQ:PL    1/1:4,50:57:99:3672,169,0
19    15063566    rs11671748    G    A    31.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.736;QD=7.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221742    GT:AD:DP:GQ:PL    0/1:2,2:4:33.20:62,0,33
19    15064858    rs2269913    A    C    213.12    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.31;ReadPosRankSum=-1.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221742    GT:AD:DP:GQ:PL    0/1:3,7:10:93.62:243,0,94
19    15065169    rs757465    T    C    148.44    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.84;ReadPosRankSum=-0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221742    GT:AD:DP:GQ:PL    0/1:2,8:10:57.70:178,0,58
19    15072787    rs3827000    A    T    870.86    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.251;DB;DP=65;Dels=0.0;FS=2.546;HRun=1;HaplotypeScore=0.6651;MQ=59.36;MQ0=0;MQRankSum=0.473;QD=13.4;ReadPosRankSum=-0.251;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542610    GT:AD:DP:GQ:PL    0/1:31,34:65:99:901,0,896
19    15075020    rs10407669    A    G    1712.76    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.78;DB;DP=134;Dels=0.0;FS=12.765;HRun=0;HaplotypeScore=0.0;MQ=59.86;MQ0=0;MQRankSum=-1.83;QD=12.78;ReadPosRankSum=-2.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542610    GT:AD:DP:GQ:PL    0/1:69,65:134:99:1743,0,2298
19    15083485    rs3746294    T    C    248.51    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DB;DP=24;Dels=0.0;FS=2.643;HRun=3;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.837;QD=10.35;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221742    GT:AD:DP:GQ:PL    0/1:13,11:24:99:278,0,418
19    15083693    rs3746295    C    A    61.24    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.895;QD=6.12;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=A15S;SNPEFF_CODON_CHANGE=Gcg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15083518_15083729;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430939    GT:AD:DP:GQ:PL    0/1:7,3:10:91.24:91,0,175
19    15122045    rs35647251    C    A    36.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.22;SNPEFF_AMINO_ACID_CHANGE=T136;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15121539_15122207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC105;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292574    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
19    15124474    rs11085935    C    T    254.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=36.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292574    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
19    15131180    rs11881113    A    G    310.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.62;MQ0=0;QD=25.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292574    GT:AD:DP:GQ:PL    1/1:0,12:12:30.06:343,30,0
19    15131213    rs7248834    G    T    749.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.33;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292574    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:782,63,0
19    15131261    rs4405675    C    T    659.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;DB;DP=28;Dels=0.0;FS=6.812;HRun=1;HaplotypeScore=3.7274;MQ=47.12;MQ0=0;MQRankSum=0.933;QD=23.57;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292574    GT:AD:DP:GQ:PL    1/1:2,26:28:60.16:693,60,0
19    15132574    rs757463    C    G    1396.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC105;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292574    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1430,111,0
19    15133762    rs8111625    G    C    173.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.74;SNPEFF_AMINO_ACID_CHANGE=S444T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15133683_15134083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC105;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292574    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:206,15,0
19    15163693    rs3181305    A    C    633.49    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=49;Dels=0.0;FS=4.235;HRun=0;HaplotypeScore=0.0;MQ=60.22;MQ0=0;MQRankSum=0.57;QD=12.93;ReadPosRankSum=-0.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221740    GT:AD:DP:GQ:PL    0/1:25,24:49:99:663,0,858
19    15165818    rs3181162    A    C    55.14    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=6.89;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221740    GT:AD:DP:GQ:PL    0/1:5,3:8:85.14:85,0,172
19    15198263    rs8105277    A    G    1016.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=P129;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15197791_15199032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1I1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000209540    GT:AD:DP:GQ:PL    1/1:0,33:34:90.20:1049,90,0
19    15198292    rs8104843    C    G    465.66    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4612;MQ=57.94;MQ0=0;MQRankSum=-0.27;QD=13.7;ReadPosRankSum=-1.099;SNPEFF_AMINO_ACID_CHANGE=P139R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15197791_15199032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000209540    GT:AD:DP:GQ:PL    0/1:16,18:34:99:496,0,477
19    15198499    .    C    G    509.54    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DP=43;Dels=0.0;FS=2.727;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=0.782;QD=11.85;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=T208S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15197791_15199032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000209540    GT:AD:DP:GQ:PL    0/1:26,17:43:99:540,0,773
19    15198507    rs8108721    T    C    533.32    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=44;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.332;QD=12.12;ReadPosRankSum=-0.687;SNPEFF_AMINO_ACID_CHANGE=F211L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15197791_15199032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000209540    GT:AD:DP:GQ:PL    0/1:25,19:44:99:563,0,802
19    15198631    rs8105737    A    C    629    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.89;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.15;QD=12.58;ReadPosRankSum=-0.69;SNPEFF_AMINO_ACID_CHANGE=Y252S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15197791_15199032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1I1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000209540    GT:AD:DP:GQ:PL    0/1:25,25:50:99:659,0,710
19    15198764    rs12975625    T    C    322.17    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.292;QD=15.34;ReadPosRankSum=-1.368;SNPEFF_AMINO_ACID_CHANGE=D296;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15197791_15199032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR1I1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000209540    GT:AD:DP:GQ:PL    0/1:10,11:21:99:352,0,306
19    15222428    rs2040858    A    G    873.74    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=1.451;DB;DP=57;Dels=0.0;FS=2.337;HRun=4;HaplotypeScore=0.7887;MQ=59.6;MQ0=0;MQRankSum=-0.91;QD=15.33;ReadPosRankSum=-0.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ILVBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263383    GT:AD:DP:GQ:PL    0/1:22,35:57:99:904,0,599
19    15222687    rs2240298    G    A    212.85    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.381;QD=16.37;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ILVBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263383    GT:AD:DP:GQ:PL    0/1:5,8:13:99:243,0,135
19    15226773    rs113720497    A    G    330.19    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=26;Dels=0.0;FS=1.657;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.54;QD=12.7;ReadPosRankSum=0.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ILVBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527093    GT:AD:DP:GQ:PL    0/1:14,12:26:99:360,0,455
19    15228542    rs7507755    A    G    206.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.154;QD=14.76;ReadPosRankSum=0.663;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ILVBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527093    GT:AD:DP:GQ:PL    0/1:7,7:14:99:237,0,193
19    15229993    rs1131177    A    G    320.78    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.726;DB;DP=26;Dels=0.0;FS=1.623;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.333;QD=12.34;ReadPosRankSum=-0.082;SNPEFF_AMINO_ACID_CHANGE=D345;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15229977_15230113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ILVBL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263383    GT:AD:DP:GQ:PL    0/1:12,14:26:99:351,0,356
19    15230219    rs12463209    C    G    85.04    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.909;DB;DP=14;Dels=0.0;FS=6.008;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.354;QD=6.07;ReadPosRankSum=0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ILVBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527093    GT:AD:DP:GQ:PL    0/1:10,4:14:99:115,0,330
19    15233581    rs2074265    C    A    308.63    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.329;DB;DP=31;Dels=0.0;FS=3.78;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.035;QD=9.96;ReadPosRankSum=0.235;SNPEFF_AMINO_ACID_CHANGE=L213;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15233504_15233615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ILVBL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263383    GT:AD:DP:GQ:PL    0/1:17,14:31:99:339,0,585
19    15233631    rs2074266    G    A    622.75    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=44;Dels=0.0;FS=4.751;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.205;QD=14.15;ReadPosRankSum=-0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ILVBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533747    GT:AD:DP:GQ:PL    0/1:21,23:44:99:653,0,597
19    15271771    rs1044009    G    A    74.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.71;SNPEFF_AMINO_ACID_CHANGE=A2223V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15270445_15272525;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
19    15273221    rs757472    T    C    361.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:395,30,0
19    15273231    rs4809028    A    G    294.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=22.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,13:13:27.08:327,27,0
19    15273248    rs4809029    A    C    383.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=27.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:417,33,0
19    15273335    rs115582213    C    T    255.18    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=18;Dels=0.0;FS=1.913;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=14.18;ReadPosRankSum=0.489;SNPEFF_AMINO_ACID_CHANGE=V1952M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15273276_15273373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    0/1:8,10:18:99:285,0,221
19    15273381    rs4809030    A    G    349.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:382,30,0
19    15276007    rs2886698    C    A    77.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
19    15276055    rs2074617    C    G    449.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=26.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,17:17:39.11:483,39,0
19    15276143    rs2074618    C    T    1324.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1357,99,0
19    15276919    rs2074619    G    A    1226.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=33.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,37:37:93.30:1260,93,0
19    15276923    rs10416777    C    T    1168.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,34:34:93.28:1201,93,0
19    15277027    rs10415431    G    A    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
19    15277938    rs1548554    C    T    1542.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1575,117,0
19    15278057    rs1548555    A    G    3702.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3703,274,0
19    15281386    rs2074620    C    A    258.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
19    15284611    rs72992080    A    C    30.84    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=15.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
19    15285052    rs1044006    T    C    63.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.12;SNPEFF_AMINO_ACID_CHANGE=P1521;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15284879_15285211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:95,9,0
19    15289613    rs11670823    A    T    198.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:231,18,0
19    15290125    rs56061231    G    A    850.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.809;QD=28.33;ReadPosRankSum=-1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:1,29:30:52.54:883,53,0
19    15290412    rs2074621    G    A    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    15292366    rs11669982    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    15292437    rs1043997    T    C    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=P864;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15292387_15292612;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539383    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    15295134    rs1043996    G    A    619.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=C846;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15295106_15295261;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,20:20:48.14:652,48,0
19    15300069    rs10423702    T    C    1833.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1866,141,0
19    15302844    rs1043994    T    C    940.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_AMINO_ACID_CHANGE=A202;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15302771_15303109;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOTCH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263388    GT:AD:DP:GQ:PL    1/1:0,30:30:78.22:973,78,0
19    15350594    rs11669901    G    A    243.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8593;MQ=58.45;MQ0=0;MQRankSum=1.164;QD=16.24;ReadPosRankSum=1.041;SNPEFF_AMINO_ACID_CHANGE=L1107;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15350470_15350632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263377    GT:AD:DP:GQ:PL    0/1:5,10:15:99:274,0,121
19    15378434    rs36132735    GCCAC    G    742.48    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.433;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=168.2482;IndelType=D;MQ=54.07;MQ0=0;MQRankSum=-1.137;QD=23.2;ReadPosRankSum=-1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263377    GT:AD:DP:GQ:PL    0/1:16,16:32:99:782,0,821
19    15383582    rs34855805    C    A    116.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.63;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263377    GT:AD:DP:GQ:PL    0/1:3,4:7:94.94:146,0,95
19    15469602    rs2024164    C    T    76.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537303    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
19    15471856    rs4809184    T    C    147.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537303    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:180,15,0
19    15472375    rs12710298    G    A    120.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269701    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
19    15479367    rs9305061    G    A    244.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269701    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
19    15485350    rs4809185    C    T    250.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269701    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:283,21,0
19    15508130    rs7247749    G    A    1533.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.15;MQ0=0;QD=29.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397410    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1567,129,0
19    15508362    rs2058322    G    C    1129.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_AMINO_ACID_CHANGE=H458Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15508331_15508436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397410    GT:AD:DP:GQ:PL    1/1:0,34:34:84.28:1162,84,0
19    15514660    rs7246816    G    A    201.41    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=57.87;MQ0=0;MQRankSum=0.278;QD=18.31;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397410    GT:AD:DP:GQ:PL    0/1:4,7:11:99:231,0,111
19    15521175    rs2058323    T    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397410    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    15533821    rs7254099    A    G    280.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=31.12;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP8L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397410    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:313,27,0
19    15549939    rs929613    C    T    148.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.23;SNPEFF_AMINO_ACID_CHANGE=E574;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15549389_15551455;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WIZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389282    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:181,15,0
19    15574858    rs78677793    C    T    607.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.286;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.857;QD=27.61;ReadPosRankSum=-1.085;SNPEFF_AMINO_ACID_CHANGE=P104;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15574842_15575188;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASAL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343625    GT:AD:DP:GQ:PL    1/1:2,20:22:9.40:639,9,0
19    15575173    .    TG    T    38.30    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=11;HaplotypeScore=105.2702;IndelType=D;MQ=45.77;MQ0=0;QD=3.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340880    GT:AD:DP:GQ:PL    1/1:5,5:11:10.98:80,11,0
19    15579645    rs79229584    G    C    475.98    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.646;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.372;QD=26.44;ReadPosRankSum=0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292609    GT:AD:DP:GQ:PL    0/1:4,14:18:99:506,0,106
19    15586672    rs892145    A    T    903.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_AMINO_ACID_CHANGE=M270K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15586349_15587419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292609    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:937,69,0
19    15587185    rs733731    C    T    1261.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_AMINO_ACID_CHANGE=R99Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15586349_15587419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292609    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1294,96,0
19    15587345    rs3813135    T    C    960.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.3;SNPEFF_AMINO_ACID_CHANGE=T46A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15586349_15587419;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292609    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:994,72,0
19    15648148    rs4310987    C    T    1406.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269703    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1440,111,0
19    15648715    rs11666601    G    A    925.43    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.622;DB;DP=52;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=1.406;QD=17.8;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=A194;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15648683_15648804;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269703    GT:AD:DP:GQ:PL    0/1:21,30:52:99:955,0,527
19    15658801    rs145247351    AGAGAGG    A    442.03    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=169.201;IndelType=D;MQ=49.11;MQ0=0;MQRankSum=0.465;QD=22.1;ReadPosRankSum=-1.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269703    GT:AD:DP:GQ:PL    0/1:8,12:20:99:481,0,483
19    15661383    rs35191310    CT    C    203.65    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=17;FS=0.0;HRun=1;HaplotypeScore=44.3243;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=11.98;ReadPosRankSum=-2.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269703    GT:AD:DP:GQ:PL    0/1:10,7:17:99:243,0,419
19    15662465    rs2280436    T    G    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269703    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
19    15722470    rs61149133    G    A    690.95    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.187;DB;DP=55;Dels=0.0;FS=1.501;HRun=0;HaplotypeScore=0.8941;MQ=53.11;MQ0=0;MQRankSum=-2.04;QD=12.56;ReadPosRankSum=0.223;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:30,25:55:99:721,0,892
19    15722480    rs28637519    T    C    737.27    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.672;DB;DP=65;Dels=0.0;FS=1.134;HRun=0;HaplotypeScore=0.0;MQ=50.51;MQ0=0;MQRankSum=-2.52;QD=11.34;ReadPosRankSum=-0.282;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:34,30:65:99:767,0,890
19    15722500    rs28529156    C    T    928.49    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=82;Dels=0.0;FS=0.921;HRun=0;HaplotypeScore=0.8667;MQ=51.03;MQ0=2;MQRankSum=-2.762;QD=11.32;ReadPosRankSum=0.179;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:43,39:82:99:958,0,1160
19    15722588    rs4808323    C    T    1237.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.207;DB;DP=88;Dels=0.0;FS=0.823;HRun=0;HaplotypeScore=0.0;MQ=50.49;MQ0=0;MQRankSum=2.024;QD=14.06;ReadPosRankSum=-1.498;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:44,44:88:99:1267,0,1111
19    15722627    rs28488043    G    A    981.64    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.389;DB;DP=85;Dels=0.0;FS=2.016;HRun=0;HaplotypeScore=0.6651;MQ=40.6;MQ0=9;MQRankSum=-0.286;QD=11.55;ReadPosRankSum=-0.9;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:47,38:85:99:1012,0,1116
19    15722730    rs28540172    G    T    853.60    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.476;DB;DP=91;Dels=0.0;FS=6.541;HRun=0;HaplotypeScore=1.8237;MQ=33.53;MQ0=11;MQRankSum=-0.56;QD=9.38;ReadPosRankSum=0.868;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:52,39:91:99:884,0,1137
19    15722739    rs28589629    C    T    799.13    MQFilter40    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.98;DB;DP=88;Dels=0.0;FS=5.027;HRun=0;HaplotypeScore=1.8216;MQ=35.68;MQ0=9;MQRankSum=-1.265;QD=9.08;ReadPosRankSum=1.416;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:52,36:88:99:829,0,1252
19    15722884    rs28691642    A    G    1390.44    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=4.57;DB;DP=85;Dels=0.0;FS=10.208;HRun=1;HaplotypeScore=0.0;MQ=52.32;MQ0=1;MQRankSum=-2.379;QD=16.36;ReadPosRankSum=-0.793;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:35,50:85:99:1420,0,1088
19    15722988    rs28666502    T    C    361.73    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.86;MQ0=0;MQRankSum=-1.986;QD=19.04;ReadPosRankSum=-0.127;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:7,12:19:99:392,0,226
19    15726345    rs16980628    G    T    101.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.49;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:3,4:7:99:131,0,104
19    15726360    rs4646522    G    T    65.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.14;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:5,3:8:95.15:95,0,172
19    15726487    rs4646523    G    T    698.55    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.194;DB;DP=51;Dels=0.0;FS=6.645;HRun=1;HaplotypeScore=0.9867;MQ=59.55;MQ0=0;MQRankSum=-0.825;QD=13.7;ReadPosRankSum=1.68;SNPEFF_AMINO_ACID_CHANGE=L20;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15726427_15726625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441682    GT:AD:DP:GQ:PL    0/1:27,24:51:99:729,0,765
19    15726560    rs73001907    G    T    995.30    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.377;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5757;MQ=59.66;MQ0=0;MQRankSum=-1.512;QD=14.86;ReadPosRankSum=1.667;SNPEFF_AMINO_ACID_CHANGE=G45C;SNPEFF_CODON_CHANGE=Ggc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15726427_15726625;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441682    GT:AD:DP:GQ:PL    0/1:29,38:67:99:1025,0,795
19    15729056    rs714772    C    G    521.17    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.378;QD=12.71;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:21,20:41:99:551,0,707
19    15730498    rs55848814    G    GC    4296.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.0;HRun=0;HaplotypeScore=210.0226;IndelType=I;MQ=59.89;MQ0=0;QD=46.7;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000441682    GT:AD:DP:GQ:PL    1/1:2,90:92:99:4297,271,0
19    15730606    rs28669833    C    T    643.63    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.808;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=-0.397;QD=13.69;ReadPosRankSum=-1.389;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:26,21:47:99:674,0,860
19    15733195    rs2072601    T    G    908.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.7887;MQ=59.3;MQ0=0;QD=27.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    1/1:0,33:33:78.21:941,78,0
19    15739084    rs4239613    T    C    1029.46    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=77;Dels=0.0;FS=3.292;HRun=1;HaplotypeScore=3.7447;MQ=58.85;MQ0=0;MQRankSum=1.648;QD=13.37;ReadPosRankSum=2.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:40,37:77:99:1059,0,1068
19    15739315    rs2056821    T    C    2170.28    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=152;Dels=0.0;FS=8.438;HRun=1;HaplotypeScore=2.8937;MQ=59.39;MQ0=0;MQRankSum=0.215;QD=14.28;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:77,74:152:99:2200,0,2221
19    15739597    rs2056822    A    C    1155.68    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.116;DB;DP=82;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9947;MQ=59.44;MQ0=0;MQRankSum=-1.483;QD=14.09;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=P259;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15739571_15739653;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:38,44:82:99:1186,0,1117
19    15739935    rs2239365    G    C    145.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.23;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:2,6:8:60.81:176,0,61
19    15739992    rs2239366    T    C    207.01    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.573;DB;DP=16;Dels=0.0;FS=4.393;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=12.94;ReadPosRankSum=-1.247;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325723    GT:AD:DP:GQ:PL    0/1:6,10:16:99:237,0,177
19    15740220    rs4239614    C    T    142.64    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=23.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443973    GT:AD:DP:GQ:PL    0/1:1,5:6:22.61:173,0,23
19    15757927    rs1290626    T    C    2842.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;DB;DP=81;Dels=0.0;FS=4.117;HRun=0;HaplotypeScore=1.8663;MQ=59.72;MQ0=0;MQRankSum=1.602;QD=35.09;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:1,80:81:99:2875,183,0
19    15759809    rs2283610    A    G    108.26    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.65;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:138,0,26
19    15759828    rs2283611    A    G    170.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:203,18,0
19    15760213    rs2283612    C    T    261.18    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=14;Dels=0.0;FS=4.472;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=18.66;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    0/1:5,9:14:99:291,0,141
19    15760577    rs10401516    C    T    332.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
19    15760881    rs1805040    C    A    1537.94    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.794;DB;DP=105;Dels=0.0;FS=6.269;HRun=0;HaplotypeScore=0.734;MQ=53.15;MQ0=1;MQRankSum=1.019;QD=14.65;ReadPosRankSum=0.252;SNPEFF_AMINO_ACID_CHANGE=A196D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15760723_15760993;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538865    GT:AD:DP:GQ:PL    0/1:49,56:105:99:1568,0,1351
19    15763248    rs2733749    A    T    452.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:485,39,0
19    15763270    rs2683038    C    G    1016.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1049,78,0
19    15763721    rs4646904    G    A    1725.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_AMINO_ACID_CHANGE=V285;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15763633_15763762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538865    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1758,141,0
19    15769253    rs4646513    C    A    3016.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3049,235,0
19    15769270    rs4646514    A    C    3880.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DB;DP=118;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=0.717;QD=32.88;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:1,117:118:99:3880,295,0
19    15769379    rs4646515    G    C    3203.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=1.8332;MQ=59.78;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3237,259,0
19    15769449    rs4646516    A    G    1811.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1844,147,0
19    15769478    rs4646517    C    T    749.56    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.06;DB;DP=58;Dels=0.0;FS=5.341;HRun=1;HaplotypeScore=1.6316;MQ=59.12;MQ0=0;MQRankSum=0.094;QD=12.92;ReadPosRankSum=1.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    0/1:31,27:58:99:780,0,1009
19    15769529    rs4646518    G    T    1809.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9829;MQ=59.68;MQ0=0;QD=25.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,71:71:99:1842,177,0
19    15769530    rs4646519    C    T    1796.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9829;MQ=59.67;MQ0=0;QD=25.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,70:70:99:1830,177,0
19    15769625    rs1915390    A    G    2473.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=32.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2506,187,0
19    15769664    rs7247021    A    G    572.25    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.99;DB;DP=52;Dels=0.0;FS=3.112;HRun=4;HaplotypeScore=0.6651;MQ=58.62;MQ0=0;MQRankSum=1.266;QD=11.0;ReadPosRankSum=-1.564;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    0/1:25,27:52:99:602,0,762
19    15769775    rs4646520    A    G    355.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.04;MQ0=0;QD=27.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:388,30,0
19    15769805    rs10404163    A    T    123.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.14;MQ0=0;QD=20.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:156,12,0
19    15770027    rs55876862    A    T    224.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.9;MQ0=5;QD=18.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221307    GT:AD:DP:GQ:PL    1/1:0,12:12:21.05:258,21,0
19    15784116    rs7253210    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550308    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    15784167    rs7254627    A    G    168.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550308    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:202,15,0
19    15784195    rs10414690    G    C    253.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550308    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:286,21,0
19    15784200    rs55794585    C    T    292.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550308    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
19    15784214    rs56398124    C    T    292.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550308    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
19    15784285    rs56205003    C    T    681.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550308    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:714,54,0
19    15784319    rs56124328    G    T    1492.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=37.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550308    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1525,114,0
19    15784377    rs16995376    C    T    896.33    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.775;DB;DP=69;Dels=0.0;FS=3.973;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.431;QD=12.99;ReadPosRankSum=-1.37;SNPEFF_AMINO_ACID_CHANGE=P13L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15784288_15784537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:36,33:69:99:926,0,1112
19    15784386    rs16995378    C    T    2627.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=T16M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15784288_15784537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2660,199,0
19    15784617    rs61666630    A    G    467.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:500,39,0
19    15784660    rs62104452    A    G    263.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:296,24,0
19    15784686    rs73522622    A    C    186.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.14;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,7:7:21.02:219,21,0
19    15788842    rs62106479    A    T    113.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:146,12,0
19    15788882    rs67197599    TC    T    159.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=23.8719;IndelType=D;MQ=62.13;MQ0=0;QD=31.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
19    15789034    rs28416595    C    A    2088.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.47;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2121,169,0
19    15789098    rs609636    A    G    3225.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.77;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=N29D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15789071_15789215;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000551607    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3259,256,0
19    15789140    rs609290    A    G    3789.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.5;MQ0=0;QD=33.54;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000548435    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3789,292,0
19    15789250    rs35491114    A    G    1987.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9454;MQ=53.44;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2020,159,0
19    15789257    rs34521056    T    C    589.06    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.653;DB;DP=61;Dels=0.0;FS=1.624;HRun=1;HaplotypeScore=0.0;MQ=52.78;MQ0=0;MQRankSum=-1.145;QD=9.66;ReadPosRankSum=0.664;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:35,26:61:99:619,0,1141
19    15789282    rs598521    C    G    1097.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=30.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,36:36:90.27:1130,90,0
19    15789302    rs66653728    T    C    645.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.14;MQ0=0;QD=21.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,30:30:60.16:678,60,0
19    15789311    rs79882219    T    C    157.97    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.182;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.53;MQ0=0;MQRankSum=-2.312;QD=6.32;ReadPosRankSum=-0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:12,13:25:99:188,0,400
19    15789316    rs62106481    A    G    493.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.89;MQ0=0;QD=20.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,24:24:42.13:527,42,0
19    15789322    rs661431    T    A    423.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=26.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    1/1:0,16:16:36.11:456,36,0
19    15791180    rs8100667    C    T    3270.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.07;MQ0=0;QD=37.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550264    GT:AD:DP:GQ:PL    1/1:0,87:87:99:3271,250,0
19    15793235    rs2285888    T    C    759.91    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=52;Dels=0.0;FS=1.632;HRun=0;HaplotypeScore=0.0;MQ=53.22;MQ0=0;MQRankSum=-4.053;QD=14.61;ReadPosRankSum=1.013;SNPEFF_AMINO_ACID_CHANGE=C188R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15793199_15793320;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:23,29:52:99:790,0,786
19    15795566    rs3063212    TTG    T    238.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=182.4334;IndelType=D;MQ=45.52;MQ0=0;QD=7.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430608    GT:AD:DP:GQ:PL    1/1:15,7:30:35.09:280,35,0
19    15795842    rs2018030    C    T    570.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.47;MQ0=0;QD=38.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430608    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:604,45,0
19    15806667    rs593898    G    T    412.46    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.538;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=12.89;ReadPosRankSum=1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:18,14:32:99:442,0,593
19    15806703    rs695149    A    C    760.49    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=3.417;DB;DP=57;Dels=0.0;FS=7.094;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.7;QD=13.34;ReadPosRankSum=0.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:32,25:57:99:790,0,949
19    15807062    rs687774    C    T    538.64    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.17;DB;DP=59;Dels=0.0;FS=1.219;HRun=0;HaplotypeScore=0.0;MQ=58.52;MQ0=0;MQRankSum=0.115;QD=9.13;ReadPosRankSum=1.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:32,27:59:99:569,0,726
19    15807157    rs688231    A    G    473.50    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.725;DB;DP=45;Dels=0.0;FS=3.416;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.924;QD=10.52;ReadPosRankSum=-1.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:25,20:45:99:503,0,870
19    15807175    rs688256    G    C    801.03    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=58;Dels=0.0;FS=4.965;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=13.81;ReadPosRankSum=-2.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:32,26:58:99:831,0,1088
19    15807212    rs596252    T    G    870.41    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.043;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=59.72;MQ0=0;MQRankSum=-0.498;QD=10.75;ReadPosRankSum=2.961;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:48,33:81:99:900,0,1448
19    15807305    rs688755    T    C    1984.23    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.483;DB;DP=140;Dels=0.0;FS=17.652;HRun=2;HaplotypeScore=2.7043;MQ=59.84;MQ0=0;MQRankSum=1.554;QD=14.17;ReadPosRankSum=0.036;SNPEFF_AMINO_ACID_CHANGE=P460;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15807240_15807322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:64,76:140:99:2014,0,1966
19    15807489    rs597621    C    T    257    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=19.77;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:4,9:13:99:287,0,100
19    15807830    rs593421    T    C    300.18    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.459;DB;DP=33;Dels=0.0;FS=3.133;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.018;QD=9.1;ReadPosRankSum=-2.277;SNPEFF_AMINO_ACID_CHANGE=L504;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15807718_15807956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:19,14:33:99:330,0,616
19    15807884    rs593818    A    G    529.21    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.051;DB;DP=38;Dels=0.0;FS=1.363;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.686;QD=13.93;ReadPosRankSum=2.636;SNPEFF_AMINO_ACID_CHANGE=S522G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15807718_15807956;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:18,20:38:99:559,0,491
19    15807984    rs594255    G    A    100.55    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=14.36;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324632    GT:AD:DP:GQ:PL    0/1:2,5:7:65.82:131,0,66
19    15838746    rs11672695    A    G    164.41    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;MQRankSum=-1.656;QD=12.65;ReadPosRankSum=-1.791;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305899    GT:AD:DP:GQ:PL    0/1:6,7:13:99:194,0,210
19    15838753    rs34728106    AG    A    224.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.993;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=73.4156;IndelType=D;MQ=56.2;MQ0=0;MQRankSum=0.158;QD=14.01;ReadPosRankSum=-0.578;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305899    GT:AD:DP:GQ:PL    0/1:8,8:16:99:263,0,301
19    15838967    rs2285955    G    A    1119.80    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DB;DP=77;Dels=0.0;FS=0.919;HRun=0;HaplotypeScore=0.0;MQ=52.09;MQ0=3;MQRankSum=-2.482;QD=14.54;ReadPosRankSum=0.427;SNPEFF_AMINO_ACID_CHANGE=T38;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15838834_15839862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305899    GT:AD:DP:GQ:PL    0/1:39,38:77:99:1150,0,1138
19    15838972    rs4569397    T    A    1152    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.289;DB;DP=82;Dels=0.0;FS=0.883;HRun=0;HaplotypeScore=0.0;MQ=51.6;MQ0=4;MQRankSum=3.286;QD=14.05;ReadPosRankSum=-0.83;SNPEFF_AMINO_ACID_CHANGE=L40Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15838834_15839862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305899    GT:AD:DP:GQ:PL    0/1:43,38:82:99:1182,0,1172
19    15839081    rs2067083    C    T    676.58    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.17;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.47;MQ0=10;MQRankSum=2.465;QD=9.95;ReadPosRankSum=0.218;SNPEFF_AMINO_ACID_CHANGE=A76;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15838834_15839862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305899    GT:AD:DP:GQ:PL    0/1:42,26:68:99:707,0,971
19    15839174    rs2285956    C    T    672.15    MQFilter40    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=1.953;DB;DP=66;Dels=0.0;FS=1.294;HRun=2;HaplotypeScore=0.6651;MQ=26.05;MQ0=21;MQRankSum=0.811;QD=10.18;ReadPosRankSum=-0.354;SNPEFF_AMINO_ACID_CHANGE=F107;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15838834_15839862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305899    GT:AD:DP:GQ:PL    0/1:35,31:66:99:702,0,408
19    15852223    rs1966357    A    C    1754.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=R7S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15852203_15853153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305892    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1788,135,0
19    15852363    rs11670007    G    A    2032.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.131;DB;DP=145;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.02;ReadPosRankSum=0.601;SNPEFF_AMINO_ACID_CHANGE=R54H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15852203_15853153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305892    GT:AD:DP:GQ:PL    0/1:78,67:145:99:2063,0,2303
19    15852495    rs77313835    G    T    82.93    FSFilter60;QDFilter2    AB=0.665;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.711;DB;DP=165;Dels=0.0;FS=219.49;HRun=2;HaplotypeScore=11.1282;MQ=55.51;MQ0=0;MQRankSum=-1.544;QD=0.5;ReadPosRankSum=1.07;SNPEFF_AMINO_ACID_CHANGE=C98F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15852203_15853153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305892    GT:AD:DP:GQ:PL    0/1:109,55:165:99:113,0,3541
19    15852544    rs11670326    C    T    1360.63    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.045;DB;DP=127;Dels=0.0;FS=1.07;HRun=2;HaplotypeScore=0.8667;MQ=54.89;MQ0=0;MQRankSum=0.68;QD=10.71;ReadPosRankSum=-0.417;SNPEFF_AMINO_ACID_CHANGE=F114;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15852203_15853153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305892    GT:AD:DP:GQ:PL    0/1:69,58:127:99:1391,0,1977
19    15852872    rs2240228    G    A    1288.39    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.046;DB;DP=107;Dels=0.0;FS=2.61;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=1.06;QD=12.04;ReadPosRankSum=0.867;SNPEFF_AMINO_ACID_CHANGE=V224M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15852203_15853153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305892    GT:AD:DP:GQ:PL    0/1:60,47:107:99:1318,0,1954
19    15853150    rs16980824    C    T    1226.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.911;DB;DP=86;Dels=0.0;FS=2.838;HRun=1;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-1.114;QD=14.27;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=S316;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15852203_15853153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305892    GT:AD:DP:GQ:PL    0/1:43,43:86:99:1257,0,1493
19    15882763    rs3752147    T    G    1390.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=55.33;MQ0=0;QD=34.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011537.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412610    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1424,120,0
19    15882777    rs3752146    A    C    1722.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.97;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011537.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412610    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1756,135,0
19    15882788    rs3752145    C    T    1695.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.85;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011537.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412610    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1728,138,0
19    15882796    rs2285889    T    A    1887.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.54;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011537.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412610    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1921,150,0
19    15905661    rs67455341    C    A    477.90    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.374;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.12;MQ0=0;MQRankSum=-0.156;QD=11.95;ReadPosRankSum=0.467;SNPEFF_AMINO_ACID_CHANGE=S268Y;SNPEFF_CODON_CHANGE=tCt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15904761_15905892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308940    GT:AD:DP:GQ:PL    0/1:22,18:40:99:508,0,658
19    15918380    rs28426969    C    T    269.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.19;DB;DP=39;Dels=0.0;FS=10.609;HRun=1;HaplotypeScore=0.0;MQ=52.7;MQ0=0;MQRankSum=0.283;QD=6.9;ReadPosRankSum=0.879;SNPEFF_AMINO_ACID_CHANGE=G156;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15917817_15918936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334920    GT:AD:DP:GQ:PL    0/1:26,13:39:99:299,0,813
19    15918455    rs61739573    G    A    380.99    MQFilter40    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.378;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.8965;MQ=37.97;MQ0=9;MQRankSum=-0.453;QD=9.07;ReadPosRankSum=-0.642;SNPEFF_AMINO_ACID_CHANGE=R131;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15917817_15918936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334920    GT:AD:DP:GQ:PL    0/1:21,20:42:99:411,0,410
19    15918647    rs4081570    G    T    316.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.326;DB;DP=50;Dels=0.0;FS=17.106;HRun=0;HaplotypeScore=0.8667;MQ=41.57;MQ0=4;MQRankSum=-4.532;QD=6.32;ReadPosRankSum=1.695;SNPEFF_AMINO_ACID_CHANGE=S67;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15917817_15918936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334920    GT:AD:DP:GQ:PL    0/1:30,20:50:99:346,0,847
19    15932941    rs3761012    A    G    1723.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC020911.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499938    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1756,135,0
19    15933059    rs3761013    A    G    438.51    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=42;Dels=0.0;FS=2.785;HRun=0;HaplotypeScore=1.7339;MQ=58.89;MQ0=0;MQRankSum=-1.815;QD=10.44;ReadPosRankSum=-3.033;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC020911.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499938    GT:AD:DP:GQ:PL    0/1:22,19:42:99:469,0,713
19    15933155    rs74468958    A    AT    510.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=5;HaplotypeScore=41.8137;IndelType=I;MQ=62.36;MQ0=0;QD=28.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC020911.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499938    GT:AD:DP:GQ:PL    1/1:4,14:18:42.14:553,42,0
19    15934599    rs2285881    C    G    437.02    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=38;Dels=0.0;FS=1.378;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.418;QD=11.5;ReadPosRankSum=0.597;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC020911.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499938    GT:AD:DP:GQ:PL    0/1:23,15:38:99:467,0,757
19    15934656    rs10411865    A    G    555.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC020911.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499938    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:588,45,0
19    15934830    rs2285882    C    G    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC020911.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499938    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:75,0,30
19    15939996    rs73927742    C    T    30.81    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.271;QD=3.08;ReadPosRankSum=0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC004510.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509303    GT:AD:DP:GQ:PL    0/1:8,2:10:60.80:61,0,221
19    15940005    rs73003263    T    G    37.36    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=16;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.11;QD=2.34;ReadPosRankSum=-1.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC004510.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509303    GT:AD:DP:GQ:PL    0/1:12,4:16:67.36:67,0,385
19    15940045    rs73003267    C    T    126.85    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.264;QD=7.46;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC004510.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509303    GT:AD:DP:GQ:PL    0/1:12,5:17:99:157,0,378
19    15940075    rs73003269    T    C    122.16    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.262;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.698;QD=5.82;ReadPosRankSum=2.793;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC004510.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509303    GT:AD:DP:GQ:PL    0/1:15,6:21:99:152,0,449
19    15940183    rs7258861    G    C    235.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC004510.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509303    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:269,21,0
19    15989589    rs3093200    G    T    389.18    MQFilter40    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.564;DB;DP=46;Dels=0.0;FS=5.649;HRun=0;HaplotypeScore=0.6651;MQ=28.42;MQ0=4;MQRankSum=-1.461;QD=8.46;ReadPosRankSum=0.231;SNPEFF_AMINO_ACID_CHANGE=L370M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15989374_15989746;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392846    GT:AD:DP:GQ:PL    0/1:21,25:46:99:419,0,336
19    15989730    rs4020346    T    C    107.88    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=0.417;DB;DP=47;Dels=0.0;FS=5.931;HRun=1;HaplotypeScore=0.7887;MQ=49.3;MQ0=2;MQRankSum=-3.35;QD=2.3;ReadPosRankSum=-0.317;SNPEFF_AMINO_ACID_CHANGE=T323A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15989374_15989746;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392846    GT:AD:DP:GQ:PL    0/1:33,13:47:99:138,0,1053
19    15989811    .    T    G    56.53    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=2.976;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=52.07;MQ0=1;MQRankSum=-2.504;QD=2.57;ReadPosRankSum=-0.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221700    GT:AD:DP:GQ:PL    0/1:17,5:22:86.52:87,0,543
19    15990048    rs3093198    A    G    706.50    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=1.717;QD=15.36;ReadPosRankSum=-0.277;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221700    GT:AD:DP:GQ:PL    0/1:20,26:46:99:736,0,681
19    15996820    rs2074900    G    A    1100.32    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.751;DB;DP=79;Dels=0.0;FS=7.448;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.961;QD=13.93;ReadPosRankSum=-0.39;SNPEFF_AMINO_ACID_CHANGE=T172I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_15996733_15996863;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000011989    GT:AD:DP:GQ:PL    0/1:42,37:79:99:1130,0,1244
19    15997136    rs3093159    A    AC    1387.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.0;HRun=8;HaplotypeScore=201.6249;IndelType=I;MQ=60.45;MQ0=0;QD=22.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011989    GT:AD:DP:GQ:PL    1/1:17,45:63:99:1429,126,0
19    16000166    rs3093158    C    T    741.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.15;MQ0=4;QD=26.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011989    GT:AD:DP:GQ:PL    1/1:0,28:28:60.19:774,60,0
19    16000609    rs3093156    T    A    566.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000011989    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:599,45,0
19    16024538    rs1060467    A    G    131.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
19    16024662    rs1064796    G    C    341.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=22.78;SNPEFF_AMINO_ACID_CHANGE=T485;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16023180_16024719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,15:15:33.05:375,33,0
19    16024739    rs2072269    A    G    280.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:313,24,0
19    16024774    rs2072270    A    G    123.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=24.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
19    16025176    rs1060463    C    T    5508.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9454;MQ=59.73;MQ0=0;QD=32.6;SNPEFF_AMINO_ACID_CHANGE=D446N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16025115_16025197;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,168:169:99:5509,403,0
19    16025312    rs12985248    T    G    1317.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1350,105,0
19    16032643    rs11086012    A    C    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
19    16032697    rs11086013    T    G    141.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:174,15,0
19    16033379    rs4808409    G    T    355.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:388,30,0
19    16034714    rs8104361    A    G    3897.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.5852;MQ=59.67;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=C276R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16034622_16034892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,127:127:99:3897,310,0
19    16035494    rs3746154    C    T    650.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:684,51,0
19    16035517    rs3746156    G    A    1271.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,34:34:96.30:1304,96,0
19    16038334    rs2219358    G    A    4065.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.58;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,109:109:99:4065,304,0
19    16038390    rs2305803    G    T    2035.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2068,156,0
19    16039996    rs3816557    C    T    84.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
19    16040034    rs3765071    T    C    271.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:304,24,0
19    16040292    rs3765070    A    G    4332.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.883;MQ=60.0;MQ0=0;QD=33.33;SNPEFF_AMINO_ACID_CHANGE=I106;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16040267_16040411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,130:130:99:4333,328,0
19    16040473    rs4808414    T    C    963.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:996,75,0
19    16044871    rs62105762    T    C    78.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
19    16044875    rs75892062    C    G    116.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
19    16045141    rs2305801    T    C    1613.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.83;MQ=59.09;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=G26;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16045021_16045219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP4F11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248041    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1646,129,0
19    16060827    rs1594685    T    G    519.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.868;QD=32.49;ReadPosRankSum=-0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OR10H4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322107    GT:AD:DP:GQ:PL    1/1:1,15:16:45.09:553,45,0
19    16136405    rs4808423    C    T    138.02    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.198;QD=19.72;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004790.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397365    GT:AD:DP:GQ:PL    0/1:2,5:7:61.93:168,0,62
19    16136528    .    G    GCAGCACCTGGC    782.20    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DP=11;FS=0.0;HRun=0;HaplotypeScore=74.8256;IndelType=I;MQ=49.64;MQ0=0;MQRankSum=-1.749;QD=71.11;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004790.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397365    GT:AD:DP:GQ:PL    0/1:5,5:11:99:821,0,435
19    16136923    rs757546    T    C    99.39    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=9.04;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004790.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397365    GT:AD:DP:GQ:PL    0/1:7,4:11:99:129,0,214
19    16137025    rs757547    C    A    97.13    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=11;Dels=0.0;FS=6.264;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=8.83;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004790.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397365    GT:AD:DP:GQ:PL    0/1:7,4:11:99:127,0,205
19    16137052    rs757548    A    C    67.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.9562;MQ=54.65;MQ0=0;MQRankSum=-0.922;QD=7.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004790.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397365    GT:AD:DP:GQ:PL    0/1:5,4:9:97.55:98,0,100
19    16146400    rs17683335    A    G    118.93    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=16.99;ReadPosRankSum=-1.495;SNPEFF_AMINO_ACID_CHANGE=R147;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16146281_16146532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004790.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397365    GT:AD:DP:GQ:PL    0/1:2,5:7:58.72:149,0,59
19    16178587    rs4808031    A    C    316.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344824    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:349,30,0
19    16186815    rs10633690    C    CCA    885.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=118.1243;IndelType=I;MQ=57.81;MQ0=0;QD=40.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344824    GT:AD:DP:GQ:PL    1/1:3,17:22:57.18:927,57,0
19    16192625    rs7247875    G    A    474.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300933    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:507,39,0
19    16192898    rs3826722    A    G    592.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300933    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:626,45,0
19    16192958    rs3786577    A    G    111.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300933    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
19    16197377    rs2303150    C    T    146.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=58.45;MQ0=0;MQRankSum=0.968;QD=9.77;ReadPosRankSum=-1.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300933    GT:AD:DP:GQ:PL    0/1:8,6:15:99:177,0,246
19    16197421    rs2303149    A    G    317.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300933    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:350,27,0
19    16197432    rs11666147    C    T    130.21    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.098;QD=11.84;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300933    GT:AD:DP:GQ:PL    0/1:5,6:11:99:160,0,154
19    16254422    rs4321304    T    C    139.01    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=23.17;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSH2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253680    GT:AD:DP:GQ:PL    0/1:1,5:6:24.60:169,0,25
19    16254597    rs35735569    A    G    60.81    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=2.73;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=6.08;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSH2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253680    GT:AD:DP:GQ:PL    0/1:7,3:10:90.81:91,0,223
19    16254694    rs2446366    A    G    51.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSH2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253680    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
19    16268207    rs5827321    TA    T    2791.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;FS=0.0;HRun=6;HaplotypeScore=300.903;IndelType=D;MQ=60.43;MQ0=0;QD=28.48;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_16268020_16268208;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSH2D;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000253680    GT:AD:DP:GQ:PL    1/1:8,90:98:99:2833,265,0
19    16275515    rs6512086    A    G    574.20    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.992;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.229;QD=20.51;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269878    GT:AD:DP:GQ:PL    0/1:8,20:28:99:604,0,241
19    16275655    rs6512087    C    T    481.40    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=62;Dels=0.0;FS=1.031;HRun=0;HaplotypeScore=0.734;MQ=58.12;MQ0=0;MQRankSum=-0.727;QD=7.76;ReadPosRankSum=-1.942;SNPEFF_AMINO_ACID_CHANGE=G139E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16275529_16275724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269878    GT:AD:DP:GQ:PL    0/1:33,29:62:99:511,0,929
19    16275772    rs4808461    A    G    401.43    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9832;MQ=57.39;MQ0=0;MQRankSum=-1.258;QD=14.87;ReadPosRankSum=0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269878    GT:AD:DP:GQ:PL    0/1:11,16:27:99:431,0,370
19    16283776    rs150902479    AGAAG    A    182.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=48.5344;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=0.736;QD=30.35;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269878    GT:AD:DP:GQ:PL    0/1:1,5:6:53.06:221,0,53
19    16283801    rs897777    G    A    173.51    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.46;MQ0=0;MQRankSum=0.747;QD=21.69;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269878    GT:AD:DP:GQ:PL    0/1:1,7:8:13.29:203,0,13
19    16301312    rs206231    A    G    55.26    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.034;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.37;QD=4.25;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM32A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263384    GT:AD:DP:GQ:PL    0/1:9,4:13:85.25:85,0,263
19    16301544    rs2242143    G    C    90.41    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=14;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.344;QD=6.46;ReadPosRankSum=0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM32A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263384    GT:AD:DP:GQ:PL    0/1:10,4:14:99:120,0,343
19    16317419    rs3217678    T    TG    262.84    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.751;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=16.9433;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=0.751;QD=29.2;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291439    GT:AD:DP:GQ:PL    0/1:1,8:9:6.96:301,0,7
19    16318697    rs2290658    A    G    274.20    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.835;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.333;QD=10.97;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291439    GT:AD:DP:GQ:PL    0/1:13,12:25:99:304,0,458
19    16320075    rs2290802    C    G    322.03    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=3.507;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=16.95;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291439    GT:AD:DP:GQ:PL    0/1:7,12:19:99:352,0,172
19    16337423    rs2305939    T    C    108.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291439    GT:AD:DP:GQ:PL    0/1:2,4:6:55.38:139,0,55
19    16338532    rs2124904    G    A    934.63    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.007;DB;DP=84;Dels=0.0;FS=6.369;HRun=0;HaplotypeScore=0.8667;MQ=59.73;MQ0=0;MQRankSum=-0.506;QD=11.13;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291439    GT:AD:DP:GQ:PL    0/1:48,34:84:99:965,0,1382
19    16339069    rs2305937    G    A    100.67    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=13;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.855;QD=7.74;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291439    GT:AD:DP:GQ:PL    0/1:8,5:13:99:131,0,243
19    16339715    rs3752797    C    T    336.07    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.98;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.694;QD=12.93;ReadPosRankSum=0.591;SNPEFF_AMINO_ACID_CHANGE=I269;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16339581_16339739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541844    GT:AD:DP:GQ:PL    0/1:14,12:26:99:366,0,378
19    16344528    rs2279060    C    G    154.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=19.27;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291439    GT:AD:DP:GQ:PL    0/1:3,5:8:86.54:184,0,87
19    16345099    rs897774    T    C    349.82    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.604;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.599;QD=15.9;ReadPosRankSum=0.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1M1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291439    GT:AD:DP:GQ:PL    0/1:9,13:22:99:380,0,282
19    16435717    rs8106384    T    C    367.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=26.23;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_16435651_16435809;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248071    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:400,30,0
19    16436262    rs3745318    T    C    43.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.89;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=L104P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16436027_16436843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248071    GT:AD:DP:GQ:PL    0/1:1,3:4:32.20:74,0,32
19    16487905    rs11086030    T    C    356.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.462;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.302;QD=12.72;ReadPosRankSum=0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248070    GT:AD:DP:GQ:PL    0/1:16,12:28:99:386,0,437
19    16514771    rs873636    A    G    476.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS15L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248070    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:510,39,0
19    16589807    rs118051449    A    G    108.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=9.03;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269881    GT:AD:DP:GQ:PL    0/1:6,6:12:99:138,0,208
19    16593189    rs139055938    CAACAA    C    497.17    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=109.5052;IndelType=D;MQ=59.39;MQ0=0;MQRankSum=0.537;QD=24.86;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269881    GT:AD:DP:GQ:PL    0/1:9,11:20:99:536,0,626
19    16593573    rs10403020    G    A    122.57    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=20.43;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=D234;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16593489_16593596;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269881    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:153,0,27
19    16601168    rs3810197    G    A    481.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=4.118;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.49;MQ0=0;MQRankSum=0.227;QD=10.71;ReadPosRankSum=-0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269881    GT:AD:DP:GQ:PL    0/1:27,18:45:99:512,0,775
19    16606742    rs3810199    G    C    166.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DB;DP=14;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.936;QD=11.93;ReadPosRankSum=-0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269881    GT:AD:DP:GQ:PL    0/1:7,7:14:99:197,0,229
19    16611527    rs62118143    T    A    196.99    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=-0.485;QD=7.58;ReadPosRankSum=0.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:17,9:26:99:227,0,612
19    16611978    rs728116    T    C    1172.13    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.771;DB;DP=85;Dels=0.0;FS=3.02;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=1.535;QD=13.79;ReadPosRankSum=-1.415;SNPEFF_AMINO_ACID_CHANGE=A125;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16611603_16612362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1202,0,1403
19    16612011    rs728117    T    C    901.24    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.574;DB;DP=70;Dels=0.0;FS=8.222;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=12.87;ReadPosRankSum=-0.464;SNPEFF_AMINO_ACID_CHANGE=S136;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16611603_16612362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:39,31:70:99:931,0,1340
19    16612365    rs7251978    G    A    249.04    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.375;DB;DP=27;Dels=0.0;FS=2.318;HRun=1;HaplotypeScore=8.8472;MQ=60.0;MQ0=0;MQRankSum=1.415;QD=9.22;ReadPosRankSum=-0.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:12,14:27:99:279,0,334
19    16612368    rs35035783    A    AT    165.76    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=3.388;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=125.8166;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.204;QD=6.91;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:14,10:24:99:205,0,162
19    16612399    rs139945315    T    A    132.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=11.05;ReadPosRankSum=1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:6,6:12:99:163,0,210
19    16613733    rs8111282    C    T    80.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=61.78;MQ0=0;MQRankSum=0.0;QD=13.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:2,4:6:70.24:110,0,70
19    16613797    rs61130725    CA    C    63.91    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=13;FS=0.0;HRun=12;HaplotypeScore=39.6787;IndelType=D;MQ=61.64;MQ0=0;MQRankSum=-0.583;QD=4.92;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:7,6:13:99:103,0,147
19    16617646    rs28716321    T    A    70.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=3.31;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=7.01;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:6,4:10:99:100,0,180
19    16628186    rs28447467    G    A    101.43    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=14.49;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHERP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000198939    GT:AD:DP:GQ:PL    0/1:2,5:7:66.82:131,0,67
19    16630613    rs45624033    G    A    545.92    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.507;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.048;QD=14.75;ReadPosRankSum=-1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221671    GT:AD:DP:GQ:PL    0/1:19,18:37:99:576,0,655
19    16631322    rs2303119    T    C    753.21    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.442;DB;DP=58;Dels=0.0;FS=10.598;HRun=0;HaplotypeScore=0.5784;MQ=58.72;MQ0=0;MQRankSum=-0.555;QD=12.99;ReadPosRankSum=1.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409035    GT:AD:DP:GQ:PL    0/1:24,33:58:99:783,0,773
19    16631776    rs8111801    G    C    281.83    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.165;DB;DP=22;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.011;QD=12.81;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CALR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409035    GT:AD:DP:GQ:PL    0/1:12,10:22:99:312,0,435
19    16633950    rs1043481    T    C    254.90    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.402;DB;DP=31;Dels=0.0;FS=3.39;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.995;QD=8.22;ReadPosRankSum=0.36;SNPEFF_AMINO_ACID_CHANGE=P631;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16633863_16634101;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHERP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546361    GT:AD:DP:GQ:PL    0/1:19,12:31:99:285,0,551
19    16641271    rs113842776    A    C    144.41    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=11.11;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHERP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546538    GT:AD:DP:GQ:PL    0/1:8,5:13:99:174,0,230
19    16764681    rs8102804    A    G    78.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=15.61;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358726    GT:AD:DP:GQ:PL    0/1:2,3:5:62.84:108,0,63
19    16771006    rs28364716    G    A    130.25    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=18.61;ReadPosRankSum=0.198;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358726    GT:AD:DP:GQ:PL    0/1:2,5:7:63.18:160,0,63
19    16790859    rs730120    C    T    415.32    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.745;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=21.86;ReadPosRankSum=0.395;SNPEFF_AMINO_ACID_CHANGE=F63;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16790795_16790951;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000187762    GT:AD:DP:GQ:PL    0/1:6,13:19:99:445,0,121
19    16791443    rs901792    T    C    552.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187762    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:585,45,0
19    16797240    rs2249827    A    G    364.80    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.302;DB;DP=29;Dels=0.0;FS=22.2;HRun=0;HaplotypeScore=2.7882;MQ=57.57;MQ0=0;MQRankSum=1.908;QD=12.58;ReadPosRankSum=-0.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187762    GT:AD:DP:GQ:PL    0/1:13,16:29:99:395,0,418
19    16797270    rs73518943    C    T    167.10    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.725;DB;DP=19;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.8321;MQ=57.53;MQ0=0;MQRankSum=0.181;QD=8.79;ReadPosRankSum=-0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187762    GT:AD:DP:GQ:PL    0/1:11,8:19:99:197,0,356
19    16798927    rs2547112    T    C    1692.14    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=1.905;DB;DP=146;Dels=0.0;FS=1.435;HRun=0;HaplotypeScore=0.9867;MQ=59.37;MQ0=0;MQRankSum=1.12;QD=11.59;ReadPosRankSum=1.698;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM38A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187762    GT:AD:DP:GQ:PL    0/1:82,64:146:99:1722,0,2375
19    16842052    rs8107776    G    T    345.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.513;DB;DP=27;Dels=0.0;FS=3.488;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.415;QD=12.8;ReadPosRankSum=0.561;SNPEFF_AMINO_ACID_CHANGE=C15F;SNPEFF_CODON_CHANGE=tGc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16842006_16842089;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379808    GT:AD:DP:GQ:PL    0/1:12,15:27:99:376,0,386
19    16842221    rs57820084    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.14;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379808    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    16860087    rs61750949    G    C    81.35    FSFilter60;QDFilter2    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.292;DB;DP=55;Dels=0.0;FS=63.27;HRun=1;HaplotypeScore=9.3886;MQ=48.95;MQ0=0;MQRankSum=-2.866;QD=1.48;ReadPosRankSum=0.013;SNPEFF_AMINO_ACID_CHANGE=A212P;SNPEFF_CODON_CHANGE=Gcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16859950_16861222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379808    GT:AD:DP:GQ:PL    0/1:37,18:55:99:111,0,1168
19    16860105    rs706764    G    A    1670.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7584;MQ=49.19;MQ0=0;QD=28.8;SNPEFF_AMINO_ACID_CHANGE=A12T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16859950_16861222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523826    GT:AD:DP:GQ:PL    1/1:1,55:58:99:1703,138,0
19    16872940    rs773852    G    A    93.66    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.0;QD=7.8;ReadPosRankSum=-0.536;SNPEFF_AMINO_ACID_CHANGE=L502;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16872790_16872949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523826    GT:AD:DP:GQ:PL    0/1:8,4:12:99:124,0,286
19    16876099    rs4808526    T    C    108.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339803    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:141,12,0
19    16899838    rs2608737    A    T    3305.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7157;MQ=59.56;MQ0=0;QD=34.79;SNPEFF_AMINO_ACID_CHANGE=N720I;SNPEFF_CODON_CHANGE=aAc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16899793_16900001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523826    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3305,241,0
19    16905474    rs2431802    G    T    187.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339803    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:221,18,0
19    16923494    rs773894    C    G    180.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.378;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.398;QD=7.51;ReadPosRankSum=1.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339803    GT:AD:DP:GQ:PL    0/1:16,8:24:99:210,0,580
19    16926067    rs11671361    A    T    644.80    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=2.472;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.214;QD=20.15;ReadPosRankSum=1.927;SNPEFF_AMINO_ACID_CHANGE=D1335V;SNPEFF_CODON_CHANGE=gAc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16925839_16927537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NWD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523826    GT:AD:DP:GQ:PL    0/1:12,20:32:99:675,0,316
19    16957638    rs2241377    A    C    96.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=9.6;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIN3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248054    GT:AD:DP:GQ:PL    0/1:5,5:10:99:126,0,183
19    16976117    rs55976622    A    C    46.09    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=14;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=4.9609;MQ=53.03;MQ0=0;MQRankSum=-1.493;QD=3.29;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIN3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248054    GT:AD:DP:GQ:PL    0/1:6,8:14:76.08:76,0,173
19    16976286    rs773911    A    G    1035.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=56.44;MQ0=0;QD=32.37;SNPEFF_AMINO_ACID_CHANGE=L483;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_16976221_16976459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIN3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248054    GT:AD:DP:GQ:PL    1/1:0,32:32:81.23:1069,81,0
19    17003789    rs773901    T    G    243.65    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=13.54;ReadPosRankSum=-0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=F2RL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248076    GT:AD:DP:GQ:PL    0/1:8,10:18:99:274,0,278
19    17015428    rs773863    G    A    80.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=6.75;ReadPosRankSum=-2.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:8,4:12:99:111,0,280
19    17025292    rs706761    G    A    1358.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_AMINO_ACID_CHANGE=T1315I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17025234_17025308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1391,102,0
19    17056676    rs8105356    T    C    48.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=8.1;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:2,4:6:67.37:79,0,67
19    17088299    rs1824152    T    C    249.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.165;DB;DP=25;Dels=0.0;FS=1.76;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=-0.837;QD=9.99;ReadPosRankSum=-0.953;SNPEFF_AMINO_ACID_CHANGE=H593R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17088178_17088350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:12,12:25:99:280,0,391
19    17088319    rs3745335    G    T    247.20    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.162;DB;DP=22;Dels=0.0;FS=5.651;HRun=1;HaplotypeScore=2.7833;MQ=58.71;MQ0=0;MQRankSum=1.03;QD=11.24;ReadPosRankSum=0.391;SNPEFF_AMINO_ACID_CHANGE=D586E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17088178_17088350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:12,10:22:99:277,0,379
19    17100438    rs4447554    T    A    343.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.055;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.71;MQ0=0;MQRankSum=-1.488;QD=9.81;ReadPosRankSum=0.886;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:21,14:35:99:373,0,645
19    17100552    rs1973093    A    G    240.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=22;Dels=0.0;FS=2.318;HRun=2;HaplotypeScore=0.0;MQ=55.85;MQ0=0;MQRankSum=-1.303;QD=10.93;ReadPosRankSum=-1.162;SNPEFF_AMINO_ACID_CHANGE=P479;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17100453_17100581;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:10,12:22:99:270,0,326
19    17108052    rs62622858    C    T    121.86    MQFilter40    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=25;Dels=0.0;FS=8.751;HRun=0;HaplotypeScore=0.0;MQ=21.34;MQ0=14;MQRankSum=0.143;QD=4.69;ReadPosRankSum=-1.408;SNPEFF_AMINO_ACID_CHANGE=V322M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17107921_17108148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388925    GT:AD:DP:GQ:PL    0/1:16,9:25:99:152,0,118
19    17108094    rs143454938    C    T    94.18    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=16;Dels=0.0;FS=13.222;HRun=0;HaplotypeScore=0.0;MQ=32.98;MQ0=5;MQRankSum=-0.365;QD=5.89;ReadPosRankSum=0.741;SNPEFF_AMINO_ACID_CHANGE=V308I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17107921_17108148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388925    GT:AD:DP:GQ:PL    0/1:11,5:16:99:124,0,153
19    17108098    rs112680414    C    T    94.25    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=15;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=32.77;MQ0=5;MQRankSum=-1.159;QD=6.28;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=A306;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17107921_17108148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388925    GT:AD:DP:GQ:PL    0/1:10,5:15:99:124,0,160
19    17108128    .    G    A    141.25    MQFilter40    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DP=12;Dels=0.0;FS=3.332;HRun=2;HaplotypeScore=0.0;MQ=35.22;MQ0=3;MQRankSum=0.956;QD=11.77;ReadPosRankSum=1.221;SNPEFF_AMINO_ACID_CHANGE=F296;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17107921_17108148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000388925    GT:AD:DP:GQ:PL    0/1:5,7:12:87.16:171,0,87
19    17108136    rs61744196    G    A    59.38    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=12;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=39.25;MQ0=2;MQRankSum=-0.684;QD=4.95;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=R294W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17107921_17108148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388925    GT:AD:DP:GQ:PL    0/1:9,3:12:89.37:89,0,166
19    17111297    rs4808551    A    G    447.70    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.666;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=58.63;MQ0=0;MQRankSum=-0.083;QD=12.44;ReadPosRankSum=-1.142;SNPEFF_AMINO_ACID_CHANGE=M265T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17111224_17111332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000388925    GT:AD:DP:GQ:PL    0/1:16,19:36:99:478,0,439
19    17111411    rs4808064    A    G    136.08    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=12.37;ReadPosRankSum=-1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:4,7:11:99:166,0,131
19    17112827    rs3745341    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
19    17112874    rs3745342    C    T    41.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
19    17112881    rs3745343    T    A    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
19    17119560    rs897768    T    C    256.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    1/1:0,11:11:24.05:289,24,0
19    17120302    rs10418865    G    A    108.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.45;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,104
19    17122630    rs35560062    G    A    220.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:254,21,0
19    17122648    rs73928423    G    A    146.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=18.29;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:2,6:8:64.22:176,0,64
19    17130975    rs10402701    G    C    545.14    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=3.291;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.11;MQ0=0;MQRankSum=-1.311;QD=20.97;ReadPosRankSum=0.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    0/1:9,17:26:99:575,0,210
19    17137290    rs11878608    A    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPAMD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291440    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    17273893    rs7256689    G    T    225.44    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.15;DB;DP=35;Dels=0.0;FS=6.631;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.444;QD=6.44;ReadPosRankSum=-0.373;SNPEFF_AMINO_ACID_CHANGE=L544;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17273798_17273932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397274    GT:AD:DP:GQ:PL    0/1:24,11:35:99:255,0,759
19    17278979    rs4808583    G    T    289.36    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=20.67;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    0/1:5,9:14:99:319,0,123
19    17283383    rs11463235    A    AG    563.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=2;HaplotypeScore=28.7056;IndelType=I;MQ=56.62;MQ0=0;QD=40.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:605,42,0
19    17298551    rs7249803    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    17298615    rs7250808    C    G    242.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
19    17298679    rs7249926    G    C    642.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,19:19:51.13:675,51,0
19    17298724    rs9305088    G    C    931    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:964,69,0
19    17298893    rs3826689    G    T    1047.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,33:33:81.22:1081,81,0
19    17298946    rs3826690    T    C    449.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:483,36,0
19    17299009    rs3826691    A    G    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    17301699    rs62126161    A    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    17301706    rs62126162    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    17301733    rs34092109    T    C    165.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
19    17301863    rs962919    G    A    1246.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1280,96,0
19    17301880    rs4808072    T    C    1321.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1354,102,0
19    17302056    rs962918    A    G    2063    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=33.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2096,156,0
19    17302112    rs35437462    ACT    A    1419.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=211.4323;IndelType=D;MQ=59.97;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:3,35:38:99:1461,105,0
19    17303774    rs1545620    T    G    324.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.16;SNPEFF_AMINO_ACID_CHANGE=S1011A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17303555_17303871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397274    GT:AD:DP:GQ:PL    1/1:0,14:14:30.05:357,30,0
19    17305440    rs1064305    T    C    621.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=G1068;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17305365_17306282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397274    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:654,54,0
19    17306031    rs2279003    T    C    842.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=29.06;SNPEFF_AMINO_ACID_CHANGE=P1265;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17305365_17306282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397274    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:876,72,0
19    17308734    rs3745160    T    G    956.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.25;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,31:31:75.23:990,75,0
19    17311442    rs2305766    C    G    383.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,16:16:39.07:416,39,0
19    17311791    rs10421794    T    C    324.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.36;MQ0=0;QD=29.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:357,27,0
19    17312992    rs2305765    C    T    1775.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=V1572;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17312939_17313112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397274    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1808,132,0
19    17313178    rs11392202    A    AT    280.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=17.5535;IndelType=I;MQ=63.02;MQ0=0;QD=40.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:322,21,0
19    17313619    rs8101251    C    A    459.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:492,39,0
19    17313804    rs55862521    G    A    360.71    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.371;QD=24.05;ReadPosRankSum=-1.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    0/1:4,11:15:85.77:391,0,86
19    17313833    rs2305764    G    A    540.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:573,42,0
19    17314189    rs1811525    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
19    17315895    rs6512176    G    C    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
19    17315973    rs113114523    A    AAAG    379.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=111.7117;IndelType=I;MQ=61.69;MQ0=0;QD=18.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:4,7:20:41.73:421,42,0
19    17316253    rs2305763    T    C    640.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:674,51,0
19    17316782    rs7248508    T    C    761.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=V1693A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17316769_17316961;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397274    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:795,60,0
19    17317252    rs2279002    A    G    170.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
19    17317955    rs8110964    A    G    324.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=23.18;SNPEFF_AMINO_ACID_CHANGE=S1842;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17317922_17318053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397274    GT:AD:DP:GQ:PL    1/1:0,14:14:30.05:357,30,0
19    17321487    rs12982797    A    G    101.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
19    17321669    rs12463169    A    G    121.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
19    17326586    rs141487581    G    A    228.37    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.489;DB;DP=21;Dels=0.0;FS=4.359;HRun=0;HaplotypeScore=0.7887;MQ=57.77;MQ0=0;MQRankSum=0.4;QD=10.87;ReadPosRankSum=0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319396    GT:AD:DP:GQ:PL    0/1:10,11:21:99:258,0,341
19    17330060    rs414528    T    C    1534.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.9;MQ0=0;QD=26.45;SNPEFF_AMINO_ACID_CHANGE=L154S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17330022_17330196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263897    GT:AD:DP:GQ:PL    1/1:0,57:58:99:1567,132,0
19    17336904    rs7254151    G    A    130.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215061    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
19    17336962    rs7255142    C    T    83.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215061    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    17337223    rs2288542    G    A    125.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215061    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
19    17337447    rs10426800    C    T    90.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215061    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:123,12,0
19    17337733    rs3745164    C    T    1777.58    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.102;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6918;MQ=59.17;MQ0=0;MQRankSum=-0.535;QD=31.74;ReadPosRankSum=-1.165;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2F6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291442    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1811,107,0
19    17337871    rs891204    A    G    1911.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.467;DB;DP=64;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.302;QD=29.87;ReadPosRankSum=-0.027;SNPEFF_AMINO_ACID_CHANGE=G105;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17337803_17338008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCEL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215061    GT:AD:DP:GQ:PL    1/1:1,62:64:99:1945,118,0
19    17337882    rs891203    C    G    2188.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.008;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.8974;MQ=58.98;MQ0=0;MQRankSum=1.008;QD=32.19;ReadPosRankSum=-1.008;SNPEFF_AMINO_ACID_CHANGE=A109G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17337803_17338008;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCEL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215061    GT:AD:DP:GQ:PL    1/1:1,66:68:99:2222,137,0
19    17338099    rs891201    G    C    315.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2F6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291442    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:348,27,0
19    17339112    rs14129    G    A    3116.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.01;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.68;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=K222;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17339065_17339118;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OCEL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215061    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3150,241,0
19    17339193    rs113462551    CT    C    495.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.131;DB;DP=34;FS=0.0;HRun=10;HaplotypeScore=228.2795;IndelType=D;MQ=60.24;MQ0=0;MQRankSum=1.131;QD=14.57;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2F6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291442    GT:AD:DP:GQ:PL    1/1:11,23:34:35.74:538,36,0
19    17339225    rs10415119    C    T    570.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.43;MQ0=0;QD=38.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2F6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291442    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:604,45,0
19    17339488    rs182910911    G    A    30.84    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=4.41;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2F6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291442    GT:AD:DP:GQ:PL    0/1:5,2:7:60.83:61,0,142
19    17351535    rs2288539    G    A    2435.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.69;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=N106;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17351480_17351574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR2F6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291442    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2469,187,0
19    17362526    rs10469471    A    G    1498.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.91;MQ0=0;QD=31.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USHBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252597    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1531,120,0
19    17366110    rs111846373    CA    C    390.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DB;DP=24;FS=8.451;HRun=11;HaplotypeScore=133.3295;IndelType=D;MQ=60.39;MQ0=0;MQRankSum=0.908;QD=16.27;ReadPosRankSum=0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USHBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252597    GT:AD:DP:GQ:PL    1/1:3,19:24:29.85:433,30,0
19    17366278    rs4430871    T    C    1726.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=31.39;SNPEFF_AMINO_ACID_CHANGE=A472;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17366194_17366415;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USHBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431146    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1759,141,0
19    17367109    rs4808612    T    C    243.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USHBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252597    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
19    17367585    rs4464206    G    C    455.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USHBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252597    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:489,36,0
19    17379558    rs10424178    C    T    110.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.85;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BABAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300965    GT:AD:DP:GQ:PL    0/1:4,4:8:99:141,0,139
19    17382505    rs10420922    A    T    127.35    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=19;Dels=0.0;FS=8.903;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=6.7;ReadPosRankSum=-2.324;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BABAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300965    GT:AD:DP:GQ:PL    0/1:12,7:19:99:157,0,377
19    17392894    rs8100241    G    A    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_AMINO_ACID_CHANGE=A20T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17392866_17393018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    17393327    rs1864115    G    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BABAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300965    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
19    17393504    rs1864113    G    C    279.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_AMINO_ACID_CHANGE=A107;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17393465_17393570;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000404085    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:313,24,0
19    17393530    rs8108174    T    A    234.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.05;SNPEFF_AMINO_ACID_CHANGE=L116Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17393465_17393570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404085    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:267,21,0
19    17394124    rs2363956    T    G    2629.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6809;MQ=58.95;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=L173W;SNPEFF_CODON_CHANGE=tTg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17394034_17394693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2662,208,0
19    17394504    rs891017    A    C    3727.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=4.3299;MQ=59.44;MQ0=0;QD=30.3;SNPEFF_AMINO_ACID_CHANGE=T300P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17394034_17394693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:0,123:123:99:3727,292,0
19    17395003    rs11086065    A    G    800.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=Q398R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17394898_17395075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:834,66,0
19    17395055    rs11882562    C    G    610.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_AMINO_ACID_CHANGE=T415;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17394898_17395075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:643,51,0
19    17395182    rs4808614    G    T    130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:163,12,0
19    17396068    rs34050017    CA    C    54.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=15;HaplotypeScore=55.7294;IndelType=D;MQ=56.62;MQ0=0;QD=7.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:2,5:7:14.76:96,15,0
19    17396549    rs751599    T    C    623.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.71;SNPEFF_AMINO_ACID_CHANGE=G495;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17396490_17396628;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:657,54,0
19    17396761    rs891018    T    C    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKLE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
19    17405010    rs6512183    G    A    91.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.922;QD=11.48;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247706    GT:AD:DP:GQ:PL    0/1:4,4:8:99:122,0,119
19    17412218    rs3745186    C    T    887.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_AMINO_ACID_CHANGE=G16R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17411665_17412253;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544788    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:921,69,0
19    17416590    rs3217329    CT    C    216.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=6;HaplotypeScore=20.648;IndelType=D;MQ=60.0;MQ0=0;QD=27.01;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247706    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:258,24,0
19    17417252    rs2288464    C    A    197.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247706    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:230,18,0
19    17420289    rs2303745    G    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252602    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    17424932    rs2288463    A    G    1511.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9789;MQ=59.01;MQ0=0;QD=32.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359866    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1544,123,0
19    17424947    rs12327712    T    G    1533.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9973;MQ=59.51;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359866    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1567,120,0
19    17435884    rs755123    T    C    2396.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8667;MQ=59.14;MQ0=0;QD=29.59;SNPEFF_AMINO_ACID_CHANGE=S991;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17435526_17436195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000159087    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2430,196,0
19    17438642    rs8102944    A    G    964.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_AMINO_ACID_CHANGE=V758;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17438498_17438689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000159087    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:998,78,0
19    17439034    rs3745191    C    T    600.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=P721;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17438971_17439792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000159087    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:634,48,0
19    17440542    rs8110408    C    G    305.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159087    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:339,27,0
19    17441488    rs1529482    C    T    611.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANO8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159087    GT:AD:DP:GQ:PL    1/1:0,22:22:54.15:644,54,0
19    17448660    rs3810204    T    C    283.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324894    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
19    17448961    rs1864112    A    C    63.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=21.29;SNPEFF_AMINO_ACID_CHANGE=T66;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17448817_17449064;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324894    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:96,9,0
19    17450016    rs3810206    T    C    403.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.92;SNPEFF_AMINO_ACID_CHANGE=C150R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17449986_17450024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546035    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:437,36,0
19    17452224    rs3745194    C    A    448.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546035    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:481,36,0
19    17463214    rs62128111    C    T    716.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLVAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252590    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:749,60,0
19    17514440    rs919265    G    C    370.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.116;QD=24.67;ReadPosRankSum=0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527220    GT:AD:DP:GQ:PL    1/1:1,14:15:2.68:400,3,0
19    17514646    rs113321277    T    TGGG    2182.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.121;DB;DP=35;FS=0.0;HRun=2;HaplotypeScore=101.3952;IndelType=I;MQ=57.6;MQ0=0;MQRankSum=0.917;QD=62.35;ReadPosRankSum=0.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252593    GT:AD:DP:GQ:PL    1/1:2,33:35:52.16:2224,52,0
19    17516400    rs111617488    A    AGCTGAAAG    2825.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=147.2043;IndelType=I;MQ=37.98;MQ0=0;QD=108.67;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527220    GT:AD:DP:GQ:PL    1/1:9,11:26:75.25:2868,75,0
19    17531450    rs2303680    G    A    55.85    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=5.08;ReadPosRankSum=0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM125A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000500836    GT:AD:DP:GQ:PL    0/1:8,3:11:85.84:86,0,249
19    17533126    rs2303678    A    G    1835.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM125A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528659    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1869,138,0
19    17534693    rs2288408    T    C    359.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM125A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526234    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:393,30,0
19    17535546    rs4808636    C    T    289.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM125A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526234    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
19    17535658    rs4808637    A    C    1281.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=31.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM125A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526234    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1314,102,0
19    17556054    rs3810209    A    G    152.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.34;SNPEFF_AMINO_ACID_CHANGE=H120;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17556008_17556093;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM221;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341130    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:185,15,0
19    17571406    rs138621059    G    C    532.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.284;DB;DP=42;Dels=0.0;FS=2.886;HRun=0;HaplotypeScore=0.5784;MQ=59.45;MQ0=0;MQRankSum=0.419;QD=12.68;ReadPosRankSum=0.446;SNPEFF_AMINO_ACID_CHANGE=L91;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17571353_17571725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXNL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301944    GT:AD:DP:GQ:PL    0/1:21,21:42:99:562,0,623
19    17571766    rs890839    A    G    109.89    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=12.21;ReadPosRankSum=-1.881;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXNL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301944    GT:AD:DP:GQ:PL    0/1:4,5:9:99:140,0,138
19    17597830    rs12979251    G    T    61.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.32;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252595    GT:AD:DP:GQ:PL    0/1:3,3:6:91.94:92,0,100
19    17610857    rs3827011    T    C    43.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.49;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252595    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:73,0,20
19    17611261    rs3746318    G    A    271.72    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=26;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.003;QD=10.45;ReadPosRankSum=-0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252595    GT:AD:DP:GQ:PL    0/1:12,14:26:99:302,0,360
19    17611490    rs11879407    T    G    80.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=5.73;ReadPosRankSum=-1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252595    GT:AD:DP:GQ:PL    0/1:8,6:14:99:110,0,224
19    17612251    rs11668681    T    C    348.81    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=29;Dels=0.0;FS=4.222;HRun=1;HaplotypeScore=1.7885;MQ=59.36;MQ0=0;MQRankSum=0.073;QD=12.03;ReadPosRankSum=-0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252595    GT:AD:DP:GQ:PL    0/1:16,13:29:99:379,0,447
19    17628352    rs4450527    T    C    420.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252603    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:454,36,0
19    17628587    rs6743    A    G    1205.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=T189;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17628519_17628659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252603    GT:AD:DP:GQ:PL    1/1:0,39:39:96.28:1239,96,0
19    17628737    rs8104468    T    C    333.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252603    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:366,27,0
19    17641391    rs59324033    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    17642881    rs12974382    G    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    17643065    rs12984143    T    C    428.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300971    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:462,36,0
19    17648350    rs8107859    T    C    611.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.57;SNPEFF_AMINO_ACID_CHANGE=I175T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17648185_17648352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435646    GT:AD:DP:GQ:PL    1/1:0,20:20:51.13:644,51,0
19    17651370    rs11878663    A    G    283.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=S140;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17651201_17651391;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449408    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:316,24,0
19    17660300    rs11666267    G    A    1339.26    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=3.714;DB;DP=97;Dels=0.0;FS=0.772;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.827;QD=13.81;ReadPosRankSum=1.094;SNPEFF_AMINO_ACID_CHANGE=G329S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17660253_17660336;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM129C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449408    GT:AD:DP:GQ:PL    0/1:50,47:97:99:1369,0,1512
19    17678077    rs11878403    C    T    208.97    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=23.22;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252599    GT:AD:DP:GQ:PL    0/1:2,7:9:53.72:239,0,54
19    17679227    rs3848644    T    C    440.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252599    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:474,36,0
19    17679248    rs17724020    G    A    275.67    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.678;QD=15.32;ReadPosRankSum=1.943;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252599    GT:AD:DP:GQ:PL    0/1:9,9:18:99:306,0,274
19    17679597    rs3848645    A    G    503.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252599    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:537,39,0
19    17683042    rs111541222    G    A    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252599    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    17691751    rs891184    C    T    937.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252599    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:970,72,0
19    17692324    rs8100092    T    G    259.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLT25D1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379714    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:292,24,0
19    17743406    rs79893619    C    CTG    295.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=12.6757;IndelType=I;MQ=60.0;MQ0=0;QD=49.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:337,18,0
19    17744075    rs79719944    G    GC    1352.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=4;HaplotypeScore=72.6317;IndelType=I;MQ=60.0;MQ0=0;QD=38.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:2,33:35:99:1395,102,0
19    17746947    rs4239634    A    G    980.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=-1.325;QD=28.02;ReadPosRankSum=0.306;SNPEFF_AMINO_ACID_CHANGE=L1032P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17746833_17746966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550896    GT:AD:DP:GQ:PL    1/1:1,34:35:81.05:1014,81,0
19    17753920    rs12975883    A    T    171.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
19    17756994    rs28510435    G    A    320.83    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=32;Dels=0.0;FS=1.998;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.032;QD=10.03;ReadPosRankSum=-1.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    0/1:18,14:32:99:351,0,644
19    17758368    rs4808675    A    G    322.14    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=1.88;DB;DP=17;Dels=0.0;FS=5.304;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.031;QD=18.95;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    0/1:4,13:17:58.54:352,0,59
19    17758554    rs4808089    T    A    55.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
19    17760232    rs11665838    C    T    690.59    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.065;DB;DP=51;Dels=0.0;FS=11.322;HRun=0;HaplotypeScore=2.3782;MQ=59.63;MQ0=0;MQRankSum=2.252;QD=13.54;ReadPosRankSum=-0.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    0/1:25,26:51:99:721,0,848
19    17760508    rs73009926    A    G    138.94    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=7.31;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    0/1:12,7:19:99:169,0,424
19    17760561    rs11665951    C    T    288.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
19    17763392    rs1159365    A    G    5185.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=59.7;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,155:155:99:5185,394,0
19    17766900    rs34752754    C    T    165.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.78;DB;DP=14;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=11.81;ReadPosRankSum=-0.201;SNPEFF_AMINO_ACID_CHANGE=A359T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17766692_17767207;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    0/1:7,7:14:99:195,0,201
19    17768857    .    T    C    502.48    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.032;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.4;MQ0=0;MQRankSum=1.23;QD=15.7;ReadPosRankSum=-1.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    0/1:11,21:32:99:532,0,287
19    17769166    rs7258943    C    T    552.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=36.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:586,45,0
19    17777431    rs10424761    A    G    1631.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.01;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1665,126,0
19    17777508    rs9305092    C    G    1836.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.88;MQ0=0;QD=29.62;SNPEFF_AMINO_ACID_CHANGE=S158;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17777459_17777513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1869,144,0
19    17778832    rs7248783    A    G    1000.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,32:32:90.25:1033,90,0
19    17780602    rs8110254    C    T    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
19    17783019    rs4808677    G    A    37.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=6.2;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UNC13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252773    GT:AD:DP:GQ:PL    0/1:2,4:6:66.40:67,0,66
19    17831591    rs56149143    G    A    137.92    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.134;QD=11.49;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324096    GT:AD:DP:GQ:PL    0/1:7,5:12:99:168,0,210
19    17835831    rs3761055    T    G    829.49    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=2.754;DB;DP=62;Dels=0.0;FS=6.287;HRun=3;HaplotypeScore=1.6609;MQ=59.33;MQ0=0;MQRankSum=-1.035;QD=13.38;ReadPosRankSum=-0.514;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324096    GT:AD:DP:GQ:PL    0/1:32,30:62:99:859,0,861
19    17844894    rs7253117    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324096    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    17844942    rs7251815    G    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1S;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324096    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    17885336    rs2287856    C    T    160    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.568;QD=13.33;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252771    GT:AD:DP:GQ:PL    0/1:5,6:12:99:190,0,125
19    17885880    rs2287855    C    T    195.69    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.195;QD=8.89;ReadPosRankSum=-0.326;SNPEFF_AMINO_ACID_CHANGE=P312;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17885865_17885889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252771    GT:AD:DP:GQ:PL    0/1:14,8:22:99:226,0,385
19    17887024    rs2287853    T    C    1135.03    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=112;Dels=0.0;FS=3.827;HRun=0;HaplotypeScore=0.7887;MQ=59.38;MQ0=0;MQRankSum=-1.199;QD=10.13;ReadPosRankSum=0.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252771    GT:AD:DP:GQ:PL    0/1:71,41:112:99:1165,0,2075
19    17887563    rs13345379    G    A    263.76    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.133;QD=18.84;ReadPosRankSum=0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252771    GT:AD:DP:GQ:PL    0/1:5,9:14:99:294,0,147
19    17892193    rs2287852    G    C    254.87    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.217;QD=9.8;ReadPosRankSum=-1.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252771    GT:AD:DP:GQ:PL    0/1:15,11:26:99:285,0,415
19    17892478    rs2042299    A    G    456.65    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.872;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.65;MQ0=0;MQRankSum=-0.41;QD=8.46;ReadPosRankSum=-0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252771    GT:AD:DP:GQ:PL    0/1:32,22:54:99:487,0,995
19    17892591    rs2042298    A    G    400.72    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=59.59;MQ0=0;MQRankSum=-0.952;QD=7.16;ReadPosRankSum=-0.263;SNPEFF_AMINO_ACID_CHANGE=T633;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17892521_17892629;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252771    GT:AD:DP:GQ:PL    0/1:40,16:56:99:431,0,1216
19    17894075    rs1234389    C    T    50.80    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=6.35;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCHO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252771    GT:AD:DP:GQ:PL    0/1:5,3:8:80.79:81,0,140
19    17922795    rs36686    G    A    734    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=74;Dels=0.0;FS=1.998;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=-0.531;QD=9.92;ReadPosRankSum=0.714;SNPEFF_AMINO_ACID_CHANGE=R328H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17922380_17924385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318683    GT:AD:DP:GQ:PL    0/1:43,30:74:99:764,0,1127
19    17937479    rs149873298    A    G    296.96    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.581;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.28;MQ0=0;MQRankSum=-2.524;QD=11.42;ReadPosRankSum=0.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JAK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534444    GT:AD:DP:GQ:PL    0/1:16,10:26:99:327,0,442
19    17941143    rs2302600    A    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JAK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428406    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    17941294    rs2302603    T    C    168.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.33;MQ0=0;MQRankSum=-0.66;QD=12.04;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JAK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428406    GT:AD:DP:GQ:PL    0/1:6,8:14:99:199,0,213
19    17941937    rs3212777    A    G    68.59    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.8;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JAK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428406    GT:AD:DP:GQ:PL    0/1:4,3:7:98.58:99,0,136
19    17942005    rs3212774    A    G    350.67    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.41;MQ0=0;MQRankSum=-0.731;QD=10.63;ReadPosRankSum=1.008;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JAK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428406    GT:AD:DP:GQ:PL    0/1:16,17:33:99:381,0,376
19    17945471    rs35458530    G    A    602.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=46;Dels=0.0;FS=6.578;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.963;QD=13.09;ReadPosRankSum=-2.679;SNPEFF_AMINO_ACID_CHANGE=A753;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_17945380_17945530;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=JAK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458235    GT:AD:DP:GQ:PL    0/1:23,23:46:99:632,0,680
19    17994393    rs73520742    T    G    47.64    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=1.345;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.269;QD=2.98;ReadPosRankSum=2.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222248    GT:AD:DP:GQ:PL    0/1:13,3:16:77.63:78,0,432
19    18001686    rs4808708    G    A    1987.78    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.27;DB;DP=157;Dels=0.0;FS=0.61;HRun=0;HaplotypeScore=5.0597;MQ=59.56;MQ0=0;MQRankSum=-0.887;QD=12.66;ReadPosRankSum=0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222248    GT:AD:DP:GQ:PL    0/1:79,76:157:99:2018,0,2025
19    18001839    rs4808709    A    G    476.98    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=0.557;DB;DP=45;Dels=0.0;FS=2.746;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.699;QD=10.6;ReadPosRankSum=0.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222248    GT:AD:DP:GQ:PL    0/1:29,16:45:99:507,0,1012
19    18092442    rs11666833    G    A    126.16    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.53;QD=7.42;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222249    GT:AD:DP:GQ:PL    0/1:11,6:17:99:156,0,288
19    18108956    rs4808732    C    G    253.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.858;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.702;QD=12.7;ReadPosRankSum=-0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222249    GT:AD:DP:GQ:PL    0/1:8,12:20:99:284,0,252
19    18109314    rs1057261    A    G    31.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=10.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536713    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:61,0,30
19    18119399    rs28597966    G    A    62.79    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=6.98;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222250    GT:AD:DP:GQ:PL    0/1:6,3:9:92.78:93,0,218
19    18119678    rs2305738    C    A    365.21    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=29;Dels=0.0;FS=3.473;HRun=2;HaplotypeScore=0.9958;MQ=58.39;MQ0=0;MQRankSum=0.829;QD=12.59;ReadPosRankSum=0.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222250    GT:AD:DP:GQ:PL    0/1:15,14:29:99:395,0,482
19    18123738    rs7259041    T    C    459.73    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.293;DB;DP=31;Dels=0.0;FS=3.372;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=14.83;ReadPosRankSum=0.209;SNPEFF_AMINO_ACID_CHANGE=L391P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18123722_18124903;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARRDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379656    GT:AD:DP:GQ:PL    0/1:14,17:31:99:490,0,344
19    18232778    rs273483    A    G    779.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:812,66,0
19    18234276    .    C    T    88.77    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=9.86;ReadPosRankSum=2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    0/1:5,4:9:99:119,0,178
19    18234441    rs740691    C    T    381.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=29.38;SNPEFF_AMINO_ACID_CHANGE=H174;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18234390_18234465;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:415,30,0
19    18235352    rs123202    T    G    359.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:392,30,0
19    18235424    rs123203    T    C    745.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:779,60,0
19    18235722    rs2009030    C    T    89.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=14.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,6:6:12.01:122,12,0
19    18241708    rs10406361    G    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
19    18242675    rs273497    C    T    69.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,3:4:9.02:102,9,0
19    18245512    rs2270623    C    T    1026.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_AMINO_ACID_CHANGE=I536;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18245389_18245521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1059,78,0
19    18245807    rs12983325    C    T    913.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,26:27:69.23:946,69,0
19    18245813    rs273499    T    C    777.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,26:26:66.19:811,66,0
19    18247851    rs674844    C    T    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    18248146    rs541225    T    C    2562.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.367;MQ=58.0;MQ0=0;QD=31.25;SNPEFF_AMINO_ACID_CHANGE=A661;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18248049_18248171;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2596,205,0
19    18252829    rs613339    A    G    509.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:542,42,0
19    18255359    rs8108738    G    A    206.41    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.84;MQ0=0;MQRankSum=-0.109;QD=9.83;ReadPosRankSum=1.485;SNPEFF_AMINO_ACID_CHANGE=G861S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18255276_18255503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    0/1:13,8:21:99:236,0,353
19    18255593    rs11086092    A    G    229.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=14;Dels=0.0;FS=6.803;HRun=4;HaplotypeScore=0.6651;MQ=58.66;MQ0=0;MQRankSum=0.386;QD=16.37;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    0/1:6,8:14:99:259,0,205
19    18256163    rs62123605    T    G    260.56    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.317;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.176;QD=12.41;ReadPosRankSum=0.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    0/1:11,10:21:99:291,0,384
19    18258459    rs1566030    A    G    37.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=12.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
19    18258598    rs1566028    A    G    41.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAST3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262811    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
19    18273047    rs1011320    T    C    317.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_AMINO_ACID_CHANGE=S313P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18273012_18273120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222254    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:351,27,0
19    18273410    rs2006885    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474310    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    18276856    rs4808755    T    C    1123.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474310    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1157,84,0
19    18277206    rs3730179    G    A    40.31    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.08;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474310    GT:AD:DP:GQ:PL    0/1:1,3:4:22.52:70,0,23
19    18279638    rs273269    T    C    442.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=29.51;SNPEFF_AMINO_ACID_CHANGE=S637;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18279536_18279706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222254    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:476,39,0
19    18279816    rs3746187    A    G    157.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.779;QD=13.12;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459743    GT:AD:DP:GQ:PL    0/1:6,6:12:99:187,0,206
19    18284651    rs2241089    G    T    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.61;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222254    GT:AD:DP:GQ:PL    0/1:2,2:4:59.04:72,0,59
19    18285751    rs2241090    G    C    134.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.0;QD=8.4;ReadPosRankSum=-1.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222254    GT:AD:DP:GQ:PL    0/1:10,5:15:99:164,0,268
19    18286546    rs200373    T    A    622.56    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.606;DB;DP=56;Dels=0.0;FS=1.214;HRun=1;HaplotypeScore=1.6643;MQ=59.17;MQ0=0;MQRankSum=1.118;QD=11.12;ReadPosRankSum=0.128;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407280    GT:AD:DP:GQ:PL    0/1:32,24:56:99:653,0,1060
19    18288069    rs7125    A    G    95.73    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=5.98;ReadPosRankSum=-0.453;SNPEFF_AMINO_ACID_CHANGE=P201;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18287950_18288102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407280    GT:AD:DP:GQ:PL    0/1:11,5:16:99:126,0,343
19    18288810    rs2921    A    G    105.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=10.58;ReadPosRankSum=0.0;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFI30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407280    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,194
19    18305578    rs16982263    G    C    114.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.0;QD=19.02;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MPV17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534421    GT:AD:DP:GQ:PL    0/1:2,4:6:27.18:144,0,27
19    18306751    rs62120383    G    A    410.61    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.966;DB;DP=24;Dels=0.0;FS=1.77;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.615;QD=17.11;ReadPosRankSum=1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MPV17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534421    GT:AD:DP:GQ:PL    0/1:10,14:24:99:441,0,289
19    18306990    rs17683509    G    C    48.88    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=6.98;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MPV17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534421    GT:AD:DP:GQ:PL    0/1:3,4:7:78.87:79,0,108
19    18308508    rs8109807    C    T    471.97    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=4.554;DB;DP=40;Dels=0.0;FS=4.19;HRun=0;HaplotypeScore=1.8801;MQ=58.84;MQ0=0;MQRankSum=-1.808;QD=11.8;ReadPosRankSum=-0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MPV17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247712    GT:AD:DP:GQ:PL    0/1:22,18:40:99:502,0,577
19    18309365    rs2271882    A    G    33.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.04;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MPV17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247712    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:63,0,30
19    18311111    rs3803919    A    G    594.91    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.03;MQ0=0;MQRankSum=-0.264;QD=13.84;ReadPosRankSum=2.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MPV17L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247712    GT:AD:DP:GQ:PL    0/1:20,23:43:99:625,0,661
19    18311199    rs1046565    A    G    816.61    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7333;MQ=59.66;MQ0=0;MQRankSum=-0.816;QD=12.01;ReadPosRankSum=-0.081;SNPEFF_AMINO_ACID_CHANGE=A95;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18311137_18311255;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222256    GT:AD:DP:GQ:PL    0/1:40,28:68:99:847,0,1081
19    18322095    rs12611244    G    A    508.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262805    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:541,42,0
19    18329240    rs1042050    T    C    934.95    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.482;DB;DP=72;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=1.447;QD=12.99;ReadPosRankSum=0.882;SNPEFF_AMINO_ACID_CHANGE=E147;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18329144_18329308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539010    GT:AD:DP:GQ:PL    0/1:37,35:72:99:965,0,1125
19    18329784    rs2229228    C    T    674.78    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=64;Dels=0.0;FS=6.995;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.285;QD=10.54;ReadPosRankSum=-0.84;SNPEFF_AMINO_ACID_CHANGE=R113Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18329750_18329848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336173    GT:AD:DP:GQ:PL    0/1:36,28:64:99:705,0,1110
19    18331357    rs11313017    AC    A    105.50    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=1.2;DB;DP=17;FS=0.0;HRun=7;HaplotypeScore=57.303;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=0.555;QD=6.21;ReadPosRankSum=1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262805    GT:AD:DP:GQ:PL    0/1:11,6:17:99:145,0,225
19    18333273    rs2074973    A    G    115.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDE4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262805    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
19    18367816    rs11086101    T    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358422    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:72,0,30
19    18368810    rs999813    G    T    1136.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=70;Dels=0.0;FS=0.949;HRun=0;HaplotypeScore=1.4105;MQ=59.67;MQ0=0;MQRankSum=1.506;QD=16.23;ReadPosRankSum=0.682;SNPEFF_AMINO_ACID_CHANGE=P1095H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18367909_18368916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392413    GT:AD:DP:GQ:PL    0/1:28,42:70:99:1166,0,896
19    18369120    rs2891654    G    A    76.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.25;ReadPosRankSum=-1.231;SNPEFF_AMINO_ACID_CHANGE=R69C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18367909_18371518;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392412    GT:AD:DP:GQ:PL    0/1:2,3:5:52.74:106,0,53
19    18375608    rs8102923    G    A    103.02    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=9.37;ReadPosRankSum=1.398;SNPEFF_AMINO_ACID_CHANGE=A914;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375173_18378336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392413    GT:AD:DP:GQ:PL    0/1:7,4:11:99:133,0,211
19    18375815    rs8103177    G    A    552.48    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=4.155;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;MQRankSum=-0.055;QD=11.28;ReadPosRankSum=1.341;SNPEFF_AMINO_ACID_CHANGE=N459;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18376351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411671    GT:AD:DP:GQ:PL    0/1:29,20:49:99:582,0,744
19    18375846    rs2277921    G    A    747.96    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=2.557;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3548;MQ=58.3;MQ0=0;MQRankSum=-0.365;QD=13.6;ReadPosRankSum=-1.969;SNPEFF_AMINO_ACID_CHANGE=P449L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18376351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411671    GT:AD:DP:GQ:PL    0/1:27,28:55:99:778,0,675
19    18375882    rs12608777    G    C    575.93    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.427;DB;DP=57;Dels=0.0;FS=2.709;HRun=2;HaplotypeScore=0.5784;MQ=57.53;MQ0=0;MQRankSum=1.932;QD=10.1;ReadPosRankSum=1.252;SNPEFF_AMINO_ACID_CHANGE=P437R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18376351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411671    GT:AD:DP:GQ:PL    0/1:32,25:57:99:606,0,601
19    18376407    rs8110972    T    A    418.62    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.917;DB;DP=33;Dels=0.0;FS=3.634;HRun=1;HaplotypeScore=0.734;MQ=59.3;MQ0=0;MQRankSum=0.929;QD=12.69;ReadPosRankSum=1.364;SNPEFF_AMINO_ACID_CHANGE=Y602F;SNPEFF_CODON_CHANGE=tAt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18378375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427634    GT:AD:DP:GQ:PL    0/1:18,15:33:99:449,0,538
19    18376517    rs61740752    C    T    641.40    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.125;DB;DP=45;Dels=0.0;FS=1.192;HRun=3;HaplotypeScore=0.5784;MQ=57.92;MQ0=0;MQRankSum=-0.489;QD=14.25;ReadPosRankSum=-0.193;SNPEFF_AMINO_ACID_CHANGE=Q565;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18378375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427634    GT:AD:DP:GQ:PL    0/1:21,24:45:99:671,0,651
19    18376522    rs2277922    T    G    594.51    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=2.502;DB;DP=43;Dels=0.0;FS=2.837;HRun=3;HaplotypeScore=0.0;MQ=57.82;MQ0=0;MQRankSum=-2.148;QD=13.83;ReadPosRankSum=0.101;SNPEFF_AMINO_ACID_CHANGE=T564P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18378375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427634    GT:AD:DP:GQ:PL    0/1:20,23:43:99:625,0,642
19    18377274    rs3746186    A    G    743.17    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.856;DB;DP=50;Dels=0.0;FS=4.144;HRun=0;HaplotypeScore=2.21;MQ=58.13;MQ0=0;MQRankSum=2.052;QD=14.86;ReadPosRankSum=-0.443;SNPEFF_AMINO_ACID_CHANGE=M313T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18378375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427634    GT:AD:DP:GQ:PL    0/1:24,25:50:99:773,0,639
19    18377496    rs8104533    C    G    792.63    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=61;Dels=0.0;FS=2.235;HRun=0;HaplotypeScore=2.444;MQ=58.86;MQ0=0;MQRankSum=0.43;QD=12.99;ReadPosRankSum=1.368;SNPEFF_AMINO_ACID_CHANGE=S239T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18378375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427634    GT:AD:DP:GQ:PL    0/1:33,27:61:99:823,0,971
19    18377647    rs8103906    G    C    242.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=3.8775;MQ=58.05;MQ0=0;MQRankSum=-1.681;QD=10.09;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=L189V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18378375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427634    GT:AD:DP:GQ:PL    0/1:12,12:24:99:272,0,199
19    18377761    rs12609001    A    G    220.84    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.604;DB;DP=22;Dels=0.0;FS=10.942;HRun=2;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=2.604;QD=10.04;ReadPosRankSum=-0.735;SNPEFF_AMINO_ACID_CHANGE=C151R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18375734_18378375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427634    GT:AD:DP:GQ:PL    0/1:13,9:22:99:251,0,466
19    18378219    rs1469023    A    G    870.84    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.853;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.09;MQ0=0;MQRankSum=-1.496;QD=11.46;ReadPosRankSum=-0.723;SNPEFF_AMINO_ACID_CHANGE=L43P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18377033_18378346;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1683;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358422    GT:AD:DP:GQ:PL    0/1:38,37:76:99:901,0,1281
19    18420704    rs2227270    C    A    68.38    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=13;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.749;QD=5.26;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252816    GT:AD:DP:GQ:PL    0/1:7,6:13:98.37:98,0,200
19    18423402    rs2232968    T    C    770.55    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.498;DB;DP=60;Dels=0.0;FS=8.433;HRun=0;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;MQRankSum=2.224;QD=12.84;ReadPosRankSum=0.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252816    GT:AD:DP:GQ:PL    0/1:30,29:60:99:801,0,848
19    18426950    rs2232965    T    C    166.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=11.92;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252816    GT:AD:DP:GQ:PL    0/1:6,8:14:99:197,0,208
19    18466840    rs34068189    C    T    585.72    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=1.621;DB;DP=34;Dels=0.0;FS=8.94;HRun=0;HaplotypeScore=1.367;MQ=59.32;MQ0=0;MQRankSum=0.055;QD=17.23;ReadPosRankSum=2.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGPEP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252813    GT:AD:DP:GQ:PL    0/1:14,20:34:99:616,0,369
19    18497024    rs1059519    G    C    885.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_AMINO_ACID_CHANGE=V9L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18496968_18497276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252809    GT:AD:DP:GQ:PL    1/1:0,29:29:72.22:919,72,0
19    18497141    rs1059369    T    A    785.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=34.14;SNPEFF_AMINO_ACID_CHANGE=S48T;SNPEFF_CODON_CHANGE=Tcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18496968_18497276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252809    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:818,63,0
19    18499238    rs1804826    G    T    235.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=33.71;SNPEFF_AMINO_ACID_CHANGE=P140;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18499096_18499986;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252809    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:269,21,0
19    18499780    rs1227733    A    G    954.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=28.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339007    GT:AD:DP:GQ:PL    1/1:0,33:33:81.24:987,81,0
19    18499784    rs1055150    C    G    919.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.27;MQ0=0;QD=34.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339007    GT:AD:DP:GQ:PL    1/1:0,27:27:75.21:953,75,0
19    18502691    rs6512263    A    C    125.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252809    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
19    18502728    rs6512264    C    A    135.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252809    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
19    18502835    rs6512265    G    A    806.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_AMINO_ACID_CHANGE=P294S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18501955_18502935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339007    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:840,63,0
19    18503093    rs6512266    T    G    296.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252809    GT:AD:DP:GQ:PL    1/1:1,8:9:24.08:329,24,0
19    18650278    rs7247733    T    C    1180.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222308    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1213,102,0
19    18652844    rs10854166    A    G    424.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222308    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:458,33,0
19    18675364    rs55724121    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222307    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
19    18675612    rs62137086    T    G    3734.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.04;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222307    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3735,310,0
19    18675854    rs10692700    G    GGGC    2769.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=126.9453;IndelType=I;MQ=56.0;MQ0=0;QD=69.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222307    GT:AD:DP:GQ:PL    1/1:0,38:40:99:2811,120,0
19    18678970    rs2314667    A    G    69.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222307    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:102,9,0
19    18679155    rs1468475    C    T    3876.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.68;MQ0=0;QD=32.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222307    GT:AD:DP:GQ:PL    1/1:0,120:121:99:3877,301,0
19    18679379    rs7648    C    G    2717.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6543;MQ=59.13;MQ0=0;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=P157A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18679212_18680197;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222307    GT:AD:DP:GQ:PL    1/1:0,79:80:99:2751,220,0
19    18684563    rs2302055    C    T    1147.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222307    GT:AD:DP:GQ:PL    1/1:0,36:36:87.26:1180,87,0
19    18685964    rs6554    G    T    1034.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=32.33;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430157    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1068,81,0
19    18699990    rs2074174    T    C    388.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=58.2;MQ0=0;QD=29.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392386    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:422,33,0
19    18700047    rs2074175    A    G    758.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392386    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:792,66,0
19    18703077    rs3170474    T    C    327.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392386    GT:AD:DP:GQ:PL    1/1:0,11:11:33.08:360,33,0
19    18704528    rs7256319    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358607    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    18707878    rs7247346    A    C    475.61    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.671;DB;DP=17;Dels=0.0;FS=9.031;HRun=3;HaplotypeScore=0.0;MQ=58.35;MQ0=0;MQRankSum=-0.671;QD=27.98;ReadPosRankSum=0.373;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358607    GT:AD:DP:GQ:PL    1/1:2,15:17:3.35:506,3,0
19    18709175    rs35521276    C    T    477.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392386    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:511,39,0
19    18709768    rs8108207    G    A    369.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392386    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:402,30,0
19    18724554    rs73531625    C    T    334.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM59L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262817    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:367,27,0
19    18726856    rs709679    T    C    1137.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=L160;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18726785_18726937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM59L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262817    GT:AD:DP:GQ:PL    1/1:0,37:37:93.27:1171,93,0
19    18774790    rs752981    G    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300976    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    18774810    rs757350    G    A    83.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300976    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    18778445    rs10421503    C    G    428.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300976    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:461,39,0
19    18857939    rs56040769    A    AC    45.08    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=14;FS=0.0;HRun=10;HaplotypeScore=73.8733;IndelType=I;MQ=56.42;MQ0=0;MQRankSum=0.727;QD=3.22;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262813    GT:AD:DP:GQ:PL    0/1:8,5:14:12.62:84,0,13
19    18876059    .    C    T    1116.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.445;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.916;QD=20.3;ReadPosRankSum=-1.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262813    GT:AD:DP:GQ:PL    0/1:22,33:55:99:1147,0,753
19    18876258    rs36070283    G    A    4660.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=59.66;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=V311I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18876214_18876338;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262813    GT:AD:DP:GQ:PL    1/1:0,136:137:99:4660,346,0
19    18882204    rs12980851    G    A    101.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=12.74;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262813    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,105
19    18895218    rs12327738    G    A    1186.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5562;MQ=58.63;MQ0=0;QD=34.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546510    GT:AD:DP:GQ:PL    1/1:0,34:34:93.29:1219,93,0
19    18895865    rs34467947    C    T    571.23    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=41;Dels=0.0;FS=12.768;HRun=0;HaplotypeScore=1.9577;MQ=60.0;MQ0=0;MQRankSum=-2.471;QD=13.93;ReadPosRankSum=-1.634;SNPEFF_AMINO_ACID_CHANGE=T532;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18895706_18895902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COMP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425807    GT:AD:DP:GQ:PL    0/1:22,19:41:99:601,0,650
19    18896087    rs35701632    C    G    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546510    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    18897526    rs11392971    A    AG    629.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=112.3252;IndelType=I;MQ=53.59;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRTC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321949    GT:AD:DP:GQ:PL    1/1:0,17:18:45.15:671,45,0
19    18898675    rs8105006    C    T    31.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=15.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222271    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
19    18901618    rs35359254    C    G    95.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=COMP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222271    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
19    18942888    rs4808161    C    G    31.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.63;MQ0=0;QD=7.92;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_18942744_18943249;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262803    GT:AD:DP:GQ:PL    1/1:0,4:4:5.99:63,6,0
19    18956699    rs59045002    G    A    75.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.406;QD=12.51;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262803    GT:AD:DP:GQ:PL    0/1:3,3:6:88.92:105,0,89
19    18963769    rs74182608    C    T    676.94    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.051;QD=21.84;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262803    GT:AD:DP:GQ:PL    0/1:11,20:31:99:707,0,255
19    18971322    rs757115    T    C    241.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.839;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5823;MQ=58.95;MQ0=0;MQRankSum=-0.394;QD=10.98;ReadPosRankSum=-0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262803    GT:AD:DP:GQ:PL    0/1:11,11:22:99:271,0,395
19    18974059    rs2238657    G    C    162.09    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.71;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.194;QD=10.81;ReadPosRankSum=-0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262803    GT:AD:DP:GQ:PL    0/1:9,6:15:99:192,0,273
19    18974200    rs2238658    A    G    2269.44    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.074;DB;DP=155;Dels=0.0;FS=10.341;HRun=1;HaplotypeScore=0.9332;MQ=59.7;MQ0=0;MQRankSum=-0.073;QD=14.55;ReadPosRankSum=0.989;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262803    GT:AD:DP:GQ:PL    0/1:70,85:155:99:2299,0,2104
19    18979324    rs11673194    A    C    119.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427170    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
19    18980172    rs4808863    G    A    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_AMINO_ACID_CHANGE=A118V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_18979361_18980199;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
19    19018866    rs758032    A    G    1735.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6457;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262812    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1768,135,0
19    19021970    rs1468461    T    C    264.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.47;MQ0=0;QD=26.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262812    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:297,24,0
19    19022007    rs1468462    C    A    227.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262812    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:260,21,0
19    19023853    rs3177137    T    C    785.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=L42;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19023793_19023855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COPE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538245    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:819,60,0
19    19030611    rs139869066    G    A    188.06    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4035;MQ=58.55;MQ0=0;MQRankSum=-0.67;QD=5.88;ReadPosRankSum=1.427;SNPEFF_AMINO_ACID_CHANGE=G21S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19030484_19030665;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX49;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247003    GT:AD:DP:GQ:PL    0/1:21,11:32:99:218,0,563
19    19032637    rs2231997    T    C    1139.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247003    GT:AD:DP:GQ:PL    1/1:0,35:35:93.27:1172,93,0
19    19035159    rs34366647    CT    C    373.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=102.4751;IndelType=D;MQ=53.77;MQ0=0;QD=28.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221222    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:416,33,0
19    19035354    rs2301659    G    T    511.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221222    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:545,42,0
19    19035355    rs2301660    C    T    515.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221222    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:548,42,0
19    19037053    rs2301661    T    C    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221222    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
19    19039908    rs62138076    G    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247003    GT:AD:DP:GQ:PL    0/1:2,2:4:56.59:72,0,57
19    19040312    rs1059240    G    C    207.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=23.03;SNPEFF_AMINO_ACID_CHANGE=S306R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19040010_19040443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221222    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:240,18,0
19    19049198    rs1064351    G    A    2079.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=Y89;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19049162_19049293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HOMER3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221222    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2113,156,0
19    19105131    rs4808896    G    A    950.02    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.587;DB;DP=87;Dels=0.0;FS=5.637;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=-0.837;QD=10.92;ReadPosRankSum=-1.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456085    GT:AD:DP:GQ:PL    0/1:47,40:87:99:980,0,1369
19    19105259    rs4808897    G    A    1378.05    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.884;DB;DP=98;Dels=0.0;FS=5.172;HRun=0;HaplotypeScore=1.8857;MQ=59.76;MQ0=0;MQRankSum=-0.373;QD=14.06;ReadPosRankSum=-0.604;SNPEFF_AMINO_ACID_CHANGE=D1003;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19105175_19105295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330854    GT:AD:DP:GQ:PL    0/1:46,52:98:99:1408,0,1428
19    19135319    rs6511010    A    G    281.72    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.512;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.403;QD=12.25;ReadPosRankSum=-0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330854    GT:AD:DP:GQ:PL    0/1:13,10:23:99:312,0,458
19    19136541    rs4808907    C    T    931.47    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=2.385;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.38;MQ0=0;MQRankSum=-0.975;QD=13.9;ReadPosRankSum=-0.372;SNPEFF_AMINO_ACID_CHANGE=G206S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19135428_19137035;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330854    GT:AD:DP:GQ:PL    0/1:34,33:67:99:961,0,1015
19    19145193    rs2269806    G    A    705.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269932    GT:AD:DP:GQ:PL    1/1:0,21:21:60.16:738,60,0
19    19153801    rs36115322    G    GC    520    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=37.1122;IndelType=I;MQ=58.2;MQ0=0;QD=40.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540707    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:562,39,0
19    19153825    rs4808909    C    G    61.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=7.69;ReadPosRankSum=-1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540707    GT:AD:DP:GQ:PL    0/1:4,4:8:91.50:91,0,147
19    19164837    rs73008960    G    T    80.98    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.849;QD=6.23;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535288    GT:AD:DP:GQ:PL    0/1:9,4:13:99:111,0,302
19    19165156    rs4808910    G    A    205.71    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=22;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.7887;MQ=57.87;MQ0=0;MQRankSum=1.059;QD=9.35;ReadPosRankSum=1.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535288    GT:AD:DP:GQ:PL    0/1:9,11:22:99:236,0,290
19    19168183    rs7258637    C    T    459.89    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.753;DB;DP=30;Dels=0.0;FS=1.768;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.335;QD=15.33;ReadPosRankSum=0.963;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000545091    GT:AD:DP:GQ:PL    0/1:13,17:30:99:490,0,389
19    19168732    rs11549380    C    T    95.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.663;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=6.79;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392336    GT:AD:DP:GQ:PL    0/1:7,7:14:99:125,0,248
19    19212658    rs56144126    G    A    341.63    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.886;DB;DP=34;Dels=0.0;FS=3.362;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.213;QD=10.05;ReadPosRankSum=-0.213;SNPEFF_AMINO_ACID_CHANGE=A50;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19212590_19212695;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A42;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318596    GT:AD:DP:GQ:PL    0/1:21,13:34:99:372,0,643
19    19215612    rs56247515    T    TA    245.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=18.781;IndelType=I;MQ=57.94;MQ0=0;QD=40.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318596    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:288,18,0
19    19216613    rs4808920    T    C    215.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318596    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:249,21,0
19    19230868    rs756791    A    G    98.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_AMINO_ACID_CHANGE=A334;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19229978_19230992;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450333    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:130,9,0
19    19232666    rs72993474    C    T    278.76    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.943;DB;DP=25;Dels=0.0;FS=5.409;HRun=2;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=-0.794;QD=11.15;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162044    GT:AD:DP:GQ:PL    0/1:14,11:25:99:309,0,457
19    19232824    rs4808923    T    C    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162044    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
19    19243843    rs10414676    T    C    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.25;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162044    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,110
19    19244033    rs72993497    C    T    301.46    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.355;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=-1.111;QD=16.75;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM161A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000162044    GT:AD:DP:GQ:PL    0/1:8,10:18:99:331,0,217
19    19290115    rs2238669    C    T    104.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.07;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MEF2BNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462498    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,146
19    19290437    rs10854010    G    A    676.53    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=2.173;DB;DP=51;Dels=0.0;FS=10.029;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.087;QD=13.27;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MEF2BNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462498    GT:AD:DP:GQ:PL    0/1:25,26:51:99:707,0,774
19    19290441    rs10854011    C    T    660.11    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.23;DB;DP=50;Dels=0.0;FS=8.135;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=13.2;ReadPosRankSum=0.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MEF2BNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462498    GT:AD:DP:GQ:PL    0/1:24,26:50:99:690,0,810
19    19307797    rs72997200    C    T    810.25    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=1.233;DB;DP=79;Dels=0.0;FS=0.887;HRun=0;HaplotypeScore=3.7836;MQ=59.12;MQ0=0;MQRankSum=0.251;QD=10.26;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=T36;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19307772_19307855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFXANK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535017    GT:AD:DP:GQ:PL    0/1:45,34:79:99:840,0,1198
19    19329924    rs2228603    C    T    136.18    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.634;QD=7.57;ReadPosRankSum=-0.906;SNPEFF_AMINO_ACID_CHANGE=P106S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19329724_19330125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539499    GT:AD:DP:GQ:PL    0/1:11,7:18:99:166,0,353
19    19348947    rs12981871    T    C    405.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252575    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:439,33,0
19    19359500    rs10423874    C    G    431.99    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.727;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.205;QD=18.0;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252575    GT:AD:DP:GQ:PL    0/1:10,14:24:99:462,0,307
19    19369435    rs2074295    A    G    326.09    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.104;DB;DP=26;Dels=0.0;FS=4.1;HRun=0;HaplotypeScore=0.7887;MQ=58.2;MQ0=0;MQRankSum=-0.198;QD=12.54;ReadPosRankSum=0.368;SNPEFF_AMINO_ACID_CHANGE=S238;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19369332_19369664;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAPLN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291481    GT:AD:DP:GQ:PL    0/1:9,16:26:99:356,0,227
19    19372150    rs7257875    C    T    187.03    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.625;DB;DP=17;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=1.4942;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=11.0;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:9,8:17:99:217,0,309
19    19372185    rs10422893    G    C    250.62    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.659;DB;DP=21;Dels=0.0;FS=2.003;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.93;ReadPosRankSum=-0.836;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:10,11:21:99:281,0,234
19    19378671    rs998732    A    G    115.91    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-1.818;QD=11.59;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:3,7:10:54.53:146,0,55
19    19378767    .    A    AGGGGGAGACCAACC    2052.85    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.987;DP=25;FS=0.0;HRun=0;HaplotypeScore=242.0651;IndelType=I;MQ=45.88;MQ0=0;MQRankSum=-3.243;QD=82.11;ReadPosRankSum=-1.974;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:18,5:25:99:2092,0,779
19    19379549    rs58542926    C    T    222.39    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=13;Dels=0.0;FS=2.92;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=17.11;ReadPosRankSum=-1.092;SNPEFF_AMINO_ACID_CHANGE=E167K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19379439_19379563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:5,8:13:99:252,0,119
19    19380596    rs72999063    G    T    1416.94    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.451;DB;DP=117;DS;Dels=0.0;FS=11.477;HRun=0;HaplotypeScore=1.8666;MQ=59.61;MQ0=0;MQRankSum=0.778;QD=12.11;ReadPosRankSum=0.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:66,51:117:99:1447,0,2013
19    19380646    rs2074299    T    C    1868.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1901,165,0
19    19380685    rs72999068    A    G    379.51    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.977;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.021;QD=12.24;ReadPosRankSum=-2.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:16,15:31:99:410,0,573
19    19380996    rs2074300    G    T    231.65    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.53;QD=15.44;ReadPosRankSum=0.884;SNPEFF_AMINO_ACID_CHANGE=A152E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19380496_19381251;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000431465    GT:AD:DP:GQ:PL    0/1:6,9:15:99:262,0,148
19    19381715    rs2074301    G    A    312.66    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.17;MQ0=0;MQRankSum=2.211;QD=11.17;ReadPosRankSum=0.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:17,11:28:99:343,0,579
19    19381728    rs2074302    G    C    722.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.974;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.821;QD=21.9;ReadPosRankSum=-1.852;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:11,22:33:99:753,0,339
19    19381755    rs2074303    C    T    1588.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1622,135,0
19    19387356    rs2010506    C    T    210.58    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=56.07;MQ0=0;MQRankSum=0.158;QD=12.39;ReadPosRankSum=0.683;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM6SF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269990    GT:AD:DP:GQ:PL    0/1:9,8:17:99:241,0,250
19    19387743    rs2074550    A    C    810.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=30.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247001    GT:AD:DP:GQ:PL    1/1:0,27:27:66.19:844,66,0
19    19388500    rs8107974    A    T    298.47    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.02;QD=17.56;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000247001    GT:AD:DP:GQ:PL    0/1:6,11:17:99:328,0,144
19    19390185    rs11555053    G    A    171.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.66;SNPEFF_AMINO_ACID_CHANGE=Y455;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19390022_19390199;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247001    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:205,15,0
19    19407718    rs10401969    T    C    116.48    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.731;QD=23.3;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535070    GT:AD:DP:GQ:PL    0/1:1,4:5:24.27:146,0,24
19    19413092    rs17751061    C    T    932.22    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.323;DB;DP=63;Dels=0.0;FS=2.182;HRun=0;HaplotypeScore=0.734;MQ=59.35;MQ0=0;MQRankSum=1.309;QD=14.57;ReadPosRankSum=-0.056;SNPEFF_AMINO_ACID_CHANGE=R290H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19413074_19413197;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000247001    GT:AD:DP:GQ:PL    0/1:32,31:63:99:962,0,860
19    19413381    rs2315022    A    G    148.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334782    GT:AD:DP:GQ:PL    1/1:0,7:7:15.02:181,15,0
19    19413947    rs2301786    A    G    37.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUGP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334782    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
19    19447933    rs34414052    G    GT    109.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;FS=0.0;HRun=12;HaplotypeScore=27.7677;IndelType=I;MQ=54.65;MQ0=0;MQRankSum=0.573;QD=12.13;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262815    GT:AD:DP:GQ:PL    0/1:3,6:9:38.58:148,0,39
19    19451591    rs2965190    A    G    130.68    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=11.88;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262815    GT:AD:DP:GQ:PL    0/1:6,5:11:99:161,0,178
19    19452249    rs2301668    G    A    187.66    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=15.64;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262815    GT:AD:DP:GQ:PL    0/1:5,7:12:99:218,0,170
19    19453742    rs2965192    A    G    906.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262815    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:940,69,0
19    19459800    rs12982276    T    C    173.73    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.11;DB;DP=24;Dels=0.0;FS=14.393;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.661;QD=7.24;ReadPosRankSum=0.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262815    GT:AD:DP:GQ:PL    0/1:15,9:24:99:204,0,504
19    19466269    rs2301671    C    T    215.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.158;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.628;QD=13.49;ReadPosRankSum=0.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAU2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262815    GT:AD:DP:GQ:PL    0/1:8,8:16:99:246,0,274
19    19545990    rs2916076    T    C    1802.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252577    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1835,135,0
19    19547086    rs2916077    T    C    1301.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.0;MQ0=0;QD=30.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448576    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1334,114,0
19    19575945    rs2163805    G    A    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252577    GT:AD:DP:GQ:PL    0/1:1,2:4:33.62:72,0,34
19    19575965    rs2163804    G    A    37.52    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.5;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252577    GT:AD:DP:GQ:PL    0/1:2,3:5:67.52:68,0,70
19    19602945    rs751856    A    G    267.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252577    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:301,24,0
19    19603692    rs4808964    C    A    128.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417582    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
19    19605348    rs2288852    T    C    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417582    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    19606481    rs113249403    TA    T    363.03    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=31;FS=0.0;HRun=4;HaplotypeScore=189.1149;IndelType=D;MQ=51.2;MQ0=0;MQRankSum=0.067;QD=11.71;ReadPosRankSum=-1.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417582    GT:AD:DP:GQ:PL    0/1:18,13:31:99:402,0,311
19    19606634    rs1047361    G    A    696.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=S232;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19606563_19606694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252577    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:729,57,0
19    19613381    rs892022    G    A    747.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.226;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=58.05;MQ0=0;MQRankSum=-0.075;QD=31.15;ReadPosRankSum=1.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494516    GT:AD:DP:GQ:PL    1/1:1,23:24:24.45:781,24,0
19    19613480    rs892021    T    C    232.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494516    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:266,21,0
19    19615981    rs111762799    T    TG    120.11    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.171;DB;DP=19;FS=0.0;HRun=7;HaplotypeScore=110.0004;IndelType=I;MQ=60.57;MQ0=0;MQRankSum=-0.515;QD=6.32;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252577    GT:AD:DP:GQ:PL    0/1:13,6:19:99:159,0,294
19    19616026    rs3752151    T    C    1208.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATAD2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252577    GT:AD:DP:GQ:PL    1/1:0,33:33:93.29:1241,93,0
19    19625547    rs7250893    A    G    831.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_AMINO_ACID_CHANGE=Y230;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19624644_19626838;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSK6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360913    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:865,66,0
19    19626734    rs80007081    A    G    334.05    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DB;DP=27;Dels=0.0;FS=3.188;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.713;QD=12.37;ReadPosRankSum=0.245;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-260F20.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555938    GT:AD:DP:GQ:PL    0/1:13,14:27:99:364,0,417
19    19626769    rs17684164    C    T    493.50    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.502;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.58;MQ0=0;MQRankSum=0.862;QD=10.07;ReadPosRankSum=0.394;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-260F20.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555938    GT:AD:DP:GQ:PL    0/1:31,18:49:99:523,0,951
19    19626781    rs77254326    T    G    502.50    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.864;DB;DP=54;Dels=0.0;FS=1.123;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.1;QD=9.31;ReadPosRankSum=-0.827;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-260F20.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555938    GT:AD:DP:GQ:PL    0/1:33,21:54:99:532,0,953
19    19637930    rs7251447    A    G    139.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511584    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:172,15,0
19    19638218    rs75525243    G    A    176.65    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.688;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.181;QD=8.03;ReadPosRankSum=-0.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511584    GT:AD:DP:GQ:PL    0/1:13,9:22:99:207,0,470
19    19638743    rs45631651    A    G    91.36    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.14;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.452;QD=4.57;ReadPosRankSum=0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511584    GT:AD:DP:GQ:PL    0/1:14,6:20:99:121,0,398
19    19640524    rs4808967    T    C    126.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252576    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
19    19646272    rs2304098    T    C    571.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NDUFA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000512771    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:605,48,0
19    19650389    rs10700660    A    AAGGG    254.79    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=0.549;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=456.3814;IndelType=I;MQ=38.74;MQ0=0;MQRankSum=-1.259;QD=6.21;ReadPosRankSum=-1.711;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-260F20.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000555938    GT:AD:DP:GQ:PL    0/1:27,5:41:99:294,0,111
19    19651140    rs4808970    A    G    143.11    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=13.01;ReadPosRankSum=-0.678;SNPEFF_AMINO_ACID_CHANGE=E97;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19651013_19651285;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291495    GT:AD:DP:GQ:PL    0/1:4,7:11:99:173,0,132
19    19652157    rs76790018    G    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YJEFN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397179    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    19652982    rs77427798    T    C    39.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.11;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YJEFN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397179    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
19    19653525    rs10664406    A    AAG    799.73    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=4.25;DB;DP=36;FS=11.357;HRun=0;HaplotypeScore=151.3193;IndelType=I;MQ=55.67;MQ0=0;MQRankSum=-2.308;QD=22.21;ReadPosRankSum=0.366;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291495    GT:AD:DP:GQ:PL    0/1:21,14:36:99:839,0,852
19    19654117    rs7252453    G    C    379.68    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.147;DB;DP=28;Dels=0.0;FS=3.558;HRun=1;HaplotypeScore=0.6651;MQ=59.17;MQ0=0;MQRankSum=1.098;QD=13.56;ReadPosRankSum=-1.635;SNPEFF_AMINO_ACID_CHANGE=L346;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19654057_19654214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291495    GT:AD:DP:GQ:PL    0/1:13,15:28:99:410,0,374
19    19654189    rs45556231    G    A    469.63    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.153;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.94;MQ0=0;MQRankSum=-0.643;QD=13.81;ReadPosRankSum=0.643;SNPEFF_AMINO_ACID_CHANGE=S370;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19654057_19654214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291495    GT:AD:DP:GQ:PL    0/1:14,19:34:99:500,0,256
19    19655670    rs11669558    C    T    64.09    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.231;QD=4.93;ReadPosRankSum=1.157;SNPEFF_AMINO_ACID_CHANGE=S772;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19654490_19657468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291495    GT:AD:DP:GQ:PL    0/1:9,4:13:94.08:94,0,266
19    19656615    rs61744761    C    T    205.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.368;DB;DP=16;Dels=0.0;FS=2.081;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.838;QD=12.87;ReadPosRankSum=-1.523;SNPEFF_AMINO_ACID_CHANGE=G1087;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19654490_19657468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CILP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291495    GT:AD:DP:GQ:PL    0/1:8,8:16:99:236,0,220
19    19675696    rs73004933    C    T    841.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DB;DP=50;Dels=0.0;FS=12.997;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.31;QD=16.83;ReadPosRankSum=-1.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251203    GT:AD:DP:GQ:PL    0/1:25,25:50:99:872,0,794
19    19680738    rs8108659    T    A    40.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.23;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PBX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251203    GT:AD:DP:GQ:PL    0/1:2,2:4:31.62:71,0,32
19    19735257    rs1266503    G    T    1471.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.1567;MQ=58.92;MQ0=0;QD=37.73;SNPEFF_AMINO_ACID_CHANGE=S288;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19734468_19735378;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPAR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407877    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1505,114,0
19    19740729    rs880090    C    G    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LPAR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407877    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,65
19    19744452    rs7248200    C    T    201.22    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.431;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.556;QD=13.41;ReadPosRankSum=0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203556    GT:AD:DP:GQ:PL    0/1:7,8:15:99:231,0,236
19    19746151    rs2304128    G    T    458.49    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.945;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=13.89;ReadPosRankSum=0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203556    GT:AD:DP:GQ:PL    0/1:18,15:33:99:488,0,602
19    19751456    rs2043293    C    A    449.08    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=17.27;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATP13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291503    GT:AD:DP:GQ:PL    0/1:10,16:26:99:479,0,327
19    19758190    rs892035    T    C    704.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=21.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATP13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491221    GT:AD:DP:GQ:PL    1/1:0,33:33:66.13:738,66,0
19    19765269    rs892036    G    C    543.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=38.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATP13A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474955    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:576,42,0
19    19765499    rs45522544    C    T    305.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=0.375;QD=12.74;ReadPosRankSum=-0.606;SNPEFF_AMINO_ACID_CHANGE=E438K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19765352_19765509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ATP13A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291503    GT:AD:DP:GQ:PL    0/1:12,12:24:99:336,0,379
19    19788539    rs71172512    T    TAGAG    1353.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=58.9407;IndelType=I;MQ=49.64;MQ0=0;QD=79.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318110    GT:AD:DP:GQ:PL    1/1:1,16:17:51.18:1396,51,0
19    19789528    rs2304130    A    G    388.26    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.183;DB;DP=43;Dels=0.0;FS=1.344;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.357;QD=9.03;ReadPosRankSum=-1.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318110    GT:AD:DP:GQ:PL    0/1:25,18:43:99:418,0,694
19    19822049    rs7246866    T    C    425.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.65;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344099    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:458,33,0
19    19823270    rs12973901    T    A    562.73    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.066;DB;DP=37;Dels=0.0;FS=1.325;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.239;QD=15.21;ReadPosRankSum=-1.003;SNPEFF_AMINO_ACID_CHANGE=T274S;SNPEFF_CODON_CHANGE=Act/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_19821282_19823898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344099    GT:AD:DP:GQ:PL    0/1:16,20:37:99:593,0,519
19    19824850    rs11085270    T    G    137.47    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.982;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.08;QD=5.09;ReadPosRankSum=-0.345;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344099    GT:AD:DP:GQ:PL    0/1:19,8:27:99:167,0,638
19    19843551    rs247774    A    G    76.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.35;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344099    GT:AD:DP:GQ:PL    0/1:2,3:5:64.27:107,0,64
19    19916736    rs12973032    T    C    917.40    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=1.714;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.266;QD=18.72;ReadPosRankSum=-0.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF506;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443905    GT:AD:DP:GQ:PL    0/1:19,30:49:99:947,0,560
19    19917640    rs2304171    A    G    355.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.073;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.903;QD=13.15;ReadPosRankSum=-0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF506;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443905    GT:AD:DP:GQ:PL    0/1:15,12:27:99:385,0,503
19    19945780    rs11085278    T    C    612.70    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.773;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=1.303;QD=10.38;ReadPosRankSum=0.769;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC011477.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000499171    GT:AD:DP:GQ:PL    0/1:34,25:59:99:643,0,1122
19    20135406    rs6511067    G    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF682;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358523    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
19    20150075    rs2286920    A    G    208.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF682;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397165    GT:AD:DP:GQ:PL    1/1:0,10:10:21.04:241,21,0
19    20150125    rs2286921    T    C    430.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF682;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397165    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:463,36,0
19    20150175    rs2286922    G    C    361.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.08;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF682;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358523    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:394,30,0
19    20150247    rs2286923    A    C    124.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.78;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF682;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358523    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:157,12,0
19    20215982    rs1654266    A    G    1905.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.891;MQ=58.71;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418063    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1939,150,0
19    20806748    rs10407293    A    G    261.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.3;MQ0=0;QD=32.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305570    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:295,24,0
19    20806770    rs34554673    T    TCA    930.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=120.064;IndelType=I;MQ=55.42;MQ0=0;QD=54.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305570    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:972,51,0
19    20806824    rs10409289    T    C    837.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.15;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305570    GT:AD:DP:GQ:PL    1/1:0,26:26:63.21:871,63,0
19    20806893    rs11085364    T    C    479.24    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=38;Dels=0.0;FS=1.237;HRun=0;HaplotypeScore=0.9734;MQ=56.62;MQ0=0;MQRankSum=1.404;QD=12.61;ReadPosRankSum=-0.133;SNPEFF_AMINO_ACID_CHANGE=*541;SNPEFF_CODON_CHANGE=taA/taG;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_19_20806893_20807154;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305570    GT:AD:DP:GQ:PL    0/1:22,16:38:99:509,0,674
19    20807177    rs35575803    G    GA    2027.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=1;HaplotypeScore=289.5579;IndelType=I;MQ=56.55;MQ0=0;QD=40.56;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_20802745_20808456;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000392298    GT:AD:DP:GQ:PL    1/1:4,46:50:99:2070,138,0
19    20807185    rs10408597    C    T    1845.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=36.91;SNPEFF_AMINO_ACID_CHANGE=E424K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1879,144,0
19    20807270    rs4809070    A    G    243.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.43;MQ0=0;QD=11.6;SNPEFF_AMINO_ACID_CHANGE=H395;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    1/1:0,21:21:27.04:277,27,0
19    20807297    .    A    G    61.29    MQFilter40    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.24;DP=15;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.5784;MQ=27.37;MQ0=0;MQRankSum=2.807;QD=4.09;ReadPosRankSum=-1.632;SNPEFF_AMINO_ACID_CHANGE=F386;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    0/1:11,4:15:46.06:91,0,46
19    20807300    rs4808252    A    G    35.13    MQFilter40    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.766;DB;DP=17;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=0.5784;MQ=35.96;MQ0=0;MQRankSum=3.091;QD=2.07;ReadPosRankSum=-0.813;SNPEFF_AMINO_ACID_CHANGE=A385;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    0/1:11,6:17:47.18:65,0,47
19    20807352    rs62107361    C    T    1918.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9134;MQ=55.26;MQ0=0;QD=33.08;SNPEFF_AMINO_ACID_CHANGE=R368K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1952,156,0
19    20807438    rs62107362    A    G    2449.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DB;DP=84;Dels=0.0;FS=11.28;HRun=0;HaplotypeScore=0.0;MQ=53.38;MQ0=0;MQRankSum=2.829;QD=29.16;ReadPosRankSum=-1.105;SNPEFF_AMINO_ACID_CHANGE=H339;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    1/1:5,79:84:49.45:2482,49,0
19    20807610    .    G    C    220.33    PASS    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DP=107;Dels=0.0;FS=1.119;HRun=0;HaplotypeScore=5.5144;MQ=56.19;MQ0=0;MQRankSum=-5.818;QD=2.06;ReadPosRankSum=5.025;SNPEFF_AMINO_ACID_CHANGE=T282R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    0/1:92,14:107:99:250,0,2938
19    20807637    .    G    T    245.21    PASS    AB=0.851;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.982;DP=94;Dels=0.0;FS=1.134;HRun=0;HaplotypeScore=3.1547;MQ=56.06;MQ0=0;MQRankSum=-5.635;QD=2.61;ReadPosRankSum=-1.069;SNPEFF_AMINO_ACID_CHANGE=A273D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    0/1:80,14:94:99:275,0,2606
19    20808149    rs1991528    A    G    1913.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=C102;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_20806951_20808456;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453075    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1946,153,0
19    20808515    rs1968385    T    A    1683.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305570    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1716,135,0
19    20808652    rs145989268    T    TA    170.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=25.0676;IndelType=I;MQ=62.13;MQ0=0;QD=34.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305570    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:213,15,0
19    20808682    rs1968384    C    A    111.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=27.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305570    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
19    20828106    rs34588720    C    CAA    429.12    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.524;DB;DP=29;FS=5.469;HRun=3;HaplotypeScore=81.8331;IndelType=I;MQ=60.74;MQ0=0;MQRankSum=-0.36;QD=14.8;ReadPosRankSum=-2.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305570    GT:AD:DP:GQ:PL    0/1:19,10:29:99:468,0,672
19    20828410    rs34679916    A    AAAG    338.88    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.659;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=76.1875;IndelType=I;MQ=56.78;MQ0=0;MQRankSum=-1.659;QD=15.4;ReadPosRankSum=-0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291750    GT:AD:DP:GQ:PL    0/1:17,5:22:99:378,0,828
19    20844340    rs3217340    G    GAAGT    1233.70    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.472;DB;DP=39;FS=6.41;HRun=0;HaplotypeScore=140.7194;IndelType=I;MQ=56.98;MQ0=0;MQRankSum=-0.578;QD=31.63;ReadPosRankSum=-0.083;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_20844250_20844402;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF626;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291750    GT:AD:DP:GQ:PL    0/1:22,17:39:99:1273,0,899
19    21106262    rs115179708    G    T    2503    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6229;MQ=58.57;MQ0=0;MQRankSum=1.152;QD=32.09;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300540    GT:AD:DP:GQ:PL    1/1:2,75:78:99:2536,163,0
19    21106322    rs73003496    C    T    746.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.946;QD=28.7;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300540    GT:AD:DP:GQ:PL    1/1:1,25:26:23.98:779,24,0
19    21116763    rs145021272    ATGTGTGTGTGTGTGTGTG    A    2830.56    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.918;DB;DP=55;FS=0.0;HRun=0;HaplotypeScore=889.5365;IndelType=D;MQ=47.21;MQ0=0;MQRankSum=1.808;QD=51.46;ReadPosRankSum=1.641;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300540    GT:AD:DP:GQ:PL    0/1:23,32:55:99:2870,0,286
19    21131481    rs11085416    A    G    1214.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=37.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300540    GT:AD:DP:GQ:PL    1/1:0,32:32:93.27:1248,93,0
19    21131571    rs56321708    A    G    2233.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.35;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=Q51R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21131550_21133108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345030    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2267,178,0
19    21131664    rs56231962    G    T    2121.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=37.22;SNPEFF_AMINO_ACID_CHANGE=R115I;SNPEFF_CODON_CHANGE=aGa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21131550_21133503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328178    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2154,162,0
19    21131850    rs56393308    C    G    2711.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=33.9;SNPEFF_AMINO_ACID_CHANGE=T144R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21131550_21133108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345030    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2745,199,0
19    21131870    rs11665978    G    C    2403.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=G151R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21131550_21133108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345030    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2436,190,0
19    21132129    rs11670246    T    C    2080.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=31.04;SNPEFF_AMINO_ACID_CHANGE=F145S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21131550_21133501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421385    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2113,166,0
19    21132211    rs11665995    A    T    2019.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=R172;SNPEFF_CODON_CHANGE=cgA/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21131550_21133501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421385    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2053,159,0
19    21132394    rs11666887    C    T    1714.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=34.98;SNPEFF_AMINO_ACID_CHANGE=T233;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21131550_21133501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421385    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1747,132,0
19    21132751    rs56207286    A    T    1739    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.114;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=34.78;ReadPosRankSum=0.668;SNPEFF_AMINO_ACID_CHANGE=T352;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21131550_21133501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421385    GT:AD:DP:GQ:PL    1/1:2,48:50:90.64:1772,91,0
19    21133129    rs56137123    T    C    531.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=33.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345030    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:564,42,0
19    21133225    rs59182323    TATAAAA    T    342.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=66.5487;IndelType=D;MQ=29.0;MQ0=0;QD=68.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345030    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:385,15,0
19    21133243    rs56339351    G    A    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=20.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345030    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:134,12,0
19    21133269    rs55637671    C    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345030    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
19    21203552    rs2081054    C    T    2647.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.83;MQ=59.44;MQ0=0;QD=32.29;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_21203426_21203609;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF430;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000261560    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2681,202,0
19    21205531    rs7252588    C    T    584.34    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.798;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=18.26;ReadPosRankSum=-1.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261560    GT:AD:DP:GQ:PL    0/1:12,20:32:99:614,0,408
19    21216153    rs7252277    A    G    1214.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261560    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1247,99,0
19    21216536    rs3760839    G    A    505.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261560    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:538,42,0
19    21239349    .    A    G    368.90    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.17;MQ0=0;MQRankSum=-0.775;QD=14.76;ReadPosRankSum=-0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF430;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000261560    GT:AD:DP:GQ:PL    0/1:11,14:25:99:399,0,298
19    21265171    rs75554772    C    T    3494.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7552;MQ=59.25;MQ0=0;QD=35.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF714;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291770    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3495,256,0
19    21265197    rs7258409    G    T    2770.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2243;MQ=58.84;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF714;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291770    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2804,208,0
19    21281171    .    CTT    C    1266.61    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=4.027;DP=66;FS=0.0;HRun=7;HaplotypeScore=216.6148;IndelType=D;MQ=58.94;MQ0=1;MQRankSum=1.321;QD=18.36;ReadPosRankSum=-0.344;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF714;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291770    GT:AD:DP:GQ:PL    0/1:28,41:66:99:1306,0,858
19    21281765    rs34494287    T    TA    494.88    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=52;FS=0.0;HRun=15;HaplotypeScore=446.4687;IndelType=I;MQ=54.43;MQ0=0;MQRankSum=-0.491;QD=9.52;ReadPosRankSum=-2.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF714;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291770    GT:AD:DP:GQ:PL    0/1:25,26:52:37.31:534,0,37
19    21299774    rs36125838    T    TATA    7031.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;FS=0.0;HRun=0;HaplotypeScore=308.2035;IndelType=I;MQ=55.22;MQ0=0;QD=64.51;SNPEFF_AMINO_ACID_CHANGE=Y102YN;SNPEFF_CODON_CHANGE=tat/tATAat;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_19_21299613_21301254;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF714;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291770    GT:AD:DP:GQ:PL    1/1:14,91:109:99:7031,316,0
19    21300462    rs2884554    A    G    1828.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=K331R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21299613_21301254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF714;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291770    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1861,141,0
19    21349311    rs7256576    C    T    1970.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF431;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311048    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2004,150,0
19    21477403    rs1781872    T    G    1121.20    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.641;DB;DP=107;Dels=0.0;FS=1.578;HRun=0;HaplotypeScore=2.4282;MQ=60.0;MQ0=0;MQRankSum=0.532;QD=10.48;ReadPosRankSum=-1.182;SNPEFF_AMINO_ACID_CHANGE=K122T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21473963_21477541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF708;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356929    GT:AD:DP:GQ:PL    0/1:60,47:107:99:1151,0,2027
19    21477431    rs1781873    T    C    1567.49    PASS    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=0.29;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.1064;MQ=60.0;MQ0=0;MQRankSum=1.251;QD=15.67;ReadPosRankSum=-1.138;SNPEFF_AMINO_ACID_CHANGE=K113E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21473963_21477541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF708;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356929    GT:AD:DP:GQ:PL    0/1:39,61:100:99:1597,0,1182
19    21492062    rs547516    G    A    4118.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8857;MQ=59.44;MQ0=0;MQRankSum=-0.83;QD=33.48;ReadPosRankSum=-1.063;SNPEFF_AMINO_ACID_CHANGE=A71V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21492048_21492143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF708;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356929    GT:AD:DP:GQ:PL    1/1:1,121:123:99:4118,284,0
19    21511784    rs11085443    G    A    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF708;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356929    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
19    21512191    rs62107534    C    G    198.84    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=57.66;MQ0=0;MQRankSum=-0.296;QD=19.88;ReadPosRankSum=0.296;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_21512012_21512212;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF708;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356929    GT:AD:DP:GQ:PL    0/1:3,7:10:75.64:229,0,76
19    21541806    rs2012013    T    C    41.58    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.185;QD=2.6;ReadPosRankSum=1.664;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_21541732_21541945;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:12,4:16:71.57:72,0,324
19    21544462    rs12982162    G    A    139.08    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=15.45;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,120
19    21544466    rs12981735    C    G    111.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=11.19;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:5,5:10:99:142,0,173
19    21544503    rs12981775    C    T    197.70    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=11.63;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:10,7:17:99:228,0,349
19    21544514    rs12981564    A    G    364.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.253;DB;DP=28;Dels=0.0;FS=4.869;HRun=0;HaplotypeScore=0.734;MQ=59.17;MQ0=0;MQRankSum=0.528;QD=13.01;ReadPosRankSum=-1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:14,14:28:99:394,0,439
19    21544571    rs1142653    G    A    759.45    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.967;DB;DP=54;Dels=0.0;FS=1.181;HRun=1;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=-0.128;QD=14.06;ReadPosRankSum=0.348;SNPEFF_AMINO_ACID_CHANGE=D3N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21544568_21544660;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:26,28:54:99:789,0,714
19    21544714    rs12982282    C    G    454.83    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.31;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.33;MQ0=0;MQRankSum=-1.355;QD=16.24;ReadPosRankSum=-0.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:14,14:28:99:485,0,469
19    21544805    rs2968023    T    A    145.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=29.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:179,15,0
19    21557835    rs2088762    C    T    32.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=-0.406;QD=5.46;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:3,3:6:62.75:63,0,108
19    21558007    rs55961038    T    G    1267.09    HaplotypeScoreFilter13    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.287;DB;DP=117;Dels=0.0;FS=0.899;HRun=0;HaplotypeScore=55.9006;MQ=59.7;MQ0=2;MQRankSum=0.513;QD=10.83;ReadPosRankSum=-0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:65,50:117:99:1297,0,2043
19    21558015    rs35659257    A    ATG    2474.66    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.658;DB;DP=127;FS=2.626;HRun=0;HaplotypeScore=568.9848;IndelType=I;MQ=60.17;MQ0=2;MQRankSum=0.221;QD=19.18;ReadPosRankSum=-0.328;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:66,62:127:99:2514,0,1582
19    21558169    rs2358993    G    A    869.72    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.32;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.663;MQ=59.8;MQ0=0;MQRankSum=-0.627;QD=9.25;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:61,33:94:99:900,0,1967
19    21558311    rs2914645    C    T    399.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:433,33,0
19    21566195    rs55875743    G    T    358.72    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.448;DB;DP=24;Dels=0.0;FS=1.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=14.95;ReadPosRankSum=1.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF738;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311015    GT:AD:DP:GQ:PL    0/1:11,13:24:99:389,0,394
19    21567360    rs1827225    A    G    833.25    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.666;DB;DP=62;Dels=0.0;FS=2.193;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=-0.629;QD=13.44;ReadPosRankSum=1.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=AC010615.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433190    GT:AD:DP:GQ:PL    0/1:34,28:62:99:863,0,1038
19    21587918    rs7254059    G    T    2076.13    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=116;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8938;MQ=59.44;MQ0=0;MQRankSum=0.095;QD=17.9;ReadPosRankSum=-0.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF493;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339914    GT:AD:DP:GQ:PL    0/1:46,70:116:99:2106,0,1285
19    21588165    rs2650847    G    A    1485.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF493;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339914    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1518,114,0
19    21588692    rs1055753    T    C    482.57    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.292;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3374;MQ=51.95;MQ0=0;MQRankSum=0.192;QD=9.85;ReadPosRankSum=-0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF493;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339914    GT:AD:DP:GQ:PL    0/1:17,23:49:99:513,0,403
19    21605645    rs11666213    G    A    505.71    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=19.45;ReadPosRankSum=-1.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF493;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355504    GT:AD:DP:GQ:PL    0/1:10,16:26:99:536,0,304
19    21606429    rs4621113    G    T    987.10    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.57;DB;DP=61;Dels=0.0;FS=3.505;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.437;QD=16.18;ReadPosRankSum=1.321;SNPEFF_AMINO_ACID_CHANGE=C195F;SNPEFF_CODON_CHANGE=tGt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21605715_21609965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF493;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355504    GT:AD:DP:GQ:PL    0/1:29,32:61:99:1017,0,944
19    21606719    rs10414834    C    G    945.09    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.236;DB;DP=72;Dels=0.0;FS=2.002;HRun=0;HaplotypeScore=1.6617;MQ=59.68;MQ0=0;MQRankSum=-0.518;QD=13.13;ReadPosRankSum=-1.329;SNPEFF_AMINO_ACID_CHANGE=L292V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21605715_21609965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF493;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355504    GT:AD:DP:GQ:PL    0/1:35,37:72:99:975,0,1151
19    21688495    rs73017722    C    T    712.89    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.511;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.775;QD=10.97;ReadPosRankSum=1.952;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_21688437_21688576;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358491    GT:AD:DP:GQ:PL    0/1:37,27:65:99:743,0,1167
19    21688602    rs10420016    C    G    960.64    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.585;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.628;QD=15.75;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358491    GT:AD:DP:GQ:PL    0/1:29,32:61:99:991,0,886
19    21718822    rs7250360    A    G    64.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-1.307;QD=7.13;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358491    GT:AD:DP:GQ:PL    0/1:4,5:9:94.14:94,0,129
19    21718929    rs10605319    GTTATAT    G    341.73    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;FS=5.441;HRun=0;HaplotypeScore=62.167;IndelType=D;MQ=48.48;MQ0=0;MQRankSum=-1.568;QD=34.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF429;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358491    GT:AD:DP:GQ:PL    0/1:4,6:10:99:381,0,389
19    21719401    rs35782355    T    C    847.62    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=1.486;DB;DP=51;Dels=0.0;FS=2.416;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=16.62;ReadPosRankSum=1.637;SNPEFF_AMINO_ACID_CHANGE=F182;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21719082_21721079;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF429;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358491    GT:AD:DP:GQ:PL    0/1:23,28:51:99:878,0,748
19    21719547    .    G    A    874.62    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DP=57;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=0.8941;MQ=59.67;MQ0=0;MQRankSum=0.441;QD=15.34;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=C231Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21719082_21721079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF429;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358491    GT:AD:DP:GQ:PL    0/1:26,31:57:99:905,0,880
19    21838002    rs7351091    G    T    693.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.57;MQ0=2;QD=27.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,25:25:54.17:726,54,0
19    21838113    rs34320073    A    AGAT    886.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=114.179;IndelType=I;MQ=51.73;MQ0=0;QD=52.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:2,15:16:45.15:929,45,0
19    21838146    rs7351088    C    T    457.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.66;MQ0=0;QD=28.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:490,39,0
19    21838147    rs58760530    A    G    455.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.66;MQ0=0;QD=28.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:489,39,0
19    21838240    rs6511279    C    A    820.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.04;MQ0=0;QD=30.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,27:27:69.21:854,69,0
19    21838351    rs7508059    A    G    1092.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.11;MQ0=0;QD=34.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,32:32:87.28:1126,87,0
19    21838492    rs6511280    C    G    1586.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1620,120,0
19    21838565    rs6511281    T    C    2037.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=30.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2070,153,0
19    21838657    rs7508494    G    A    1888.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1922,147,0
19    21838785    rs10422946    C    T    1289.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=32.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1323,99,0
19    21838830    rs10422804    A    C    1187.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=32.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,35:36:90.30:1220,90,0
19    21839114    rs2139528    G    A    120.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.31;MQ0=0;QD=30.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC092364.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504760    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
19    21909948    rs7246400    G    A    1017.78    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.845;DB;DP=72;Dels=0.0;FS=7.943;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.214;QD=14.14;ReadPosRankSum=-1.172;SNPEFF_AMINO_ACID_CHANGE=T389I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_21905568_21910791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF100;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358296    GT:AD:DP:GQ:PL    0/1:37,35:72:99:1048,0,1296
19    21927706    rs4613201    C    T    3271.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=48.6;MQ0=1;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358296    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3271,244,0
19    21948748    rs11085493    T    C    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358296    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    21950337    rs10412066    G    C    1388.97    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.562;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.35;MQ0=0;MQRankSum=2.018;QD=19.56;ReadPosRankSum=-0.018;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358296    GT:AD:DP:GQ:PL    0/1:29,42:71:99:1419,0,907
19    21950402    rs6511291    T    C    235.75    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.531;QD=12.41;ReadPosRankSum=-0.531;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF100;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358296    GT:AD:DP:GQ:PL    0/1:9,10:19:99:266,0,301
19    21990263    rs6511296    C    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354959    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
19    22153495    rs2359812    A    T    1952.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=34.25;SNPEFF_AMINO_ACID_CHANGE=L1165H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22153485_22153540;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428290    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1985,147,0
19    22153696    rs4378732    G    A    2272.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400646    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2305,169,0
19    22153808    rs4550595    C    T    2467.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.96;MQ0=0;QD=37.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400646    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2501,184,0
19    22154732    rs8108957    T    C    4509.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=57.86;MQ0=1;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=D1035G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22148897_22157609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397126    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4509,340,0
19    22154954    rs2214301    C    T    2269.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=35.46;SNPEFF_AMINO_ACID_CHANGE=S961N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22148897_22157609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397126    GT:AD:DP:GQ:PL    1/1:0,63:64:99:2302,169,0
19    22155715    .    G    A    314.75    PASS    AB=0.834;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.585;DP=147;Dels=0.0;FS=0.918;HRun=0;HaplotypeScore=2.5519;MQ=41.41;MQ0=12;MQRankSum=-1.245;QD=2.14;ReadPosRankSum=-1.232;SNPEFF_AMINO_ACID_CHANGE=N607;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22154972_22156148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428290    GT:AD:DP:GQ:PL    0/1:121,24:147:99:345,0,3407
19    22155725    .    C    G    274.77    QDFilter2    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.081;DP=153;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5572;MQ=41.53;MQ0=12;MQRankSum=-1.873;QD=1.8;ReadPosRankSum=1.414;SNPEFF_AMINO_ACID_CHANGE=W604S;SNPEFF_CODON_CHANGE=tGg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22154972_22156148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428290    GT:AD:DP:GQ:PL    0/1:128,25:153:99:305,0,3520
19    22155783    .    C    T    189.62    MQFilter40;QDFilter2    AB=0.894;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DP=151;Dels=0.0;FS=5.303;HRun=0;HaplotypeScore=0.0;MQ=38.7;MQ0=15;MQRankSum=-0.402;QD=1.26;ReadPosRankSum=-1.928;SNPEFF_AMINO_ACID_CHANGE=V585I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22154972_22156148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428290    GT:AD:DP:GQ:PL    0/1:135,16:151:99:220,0,3710
19    22155918    rs10425763    T    C    3590.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=50.49;MQ0=3;QD=29.19;SNPEFF_AMINO_ACID_CHANGE=K540E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22154972_22156148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428290    GT:AD:DP:GQ:PL    1/1:2,121:123:99:3591,274,0
19    22156482    rs12975751    G    T    3734.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=53.75;MQ0=0;QD=31.38;SNPEFF_AMINO_ACID_CHANGE=P452T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22148897_22157609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397126    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3734,301,0
19    22156585    rs1018912    G    T    3272.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=38.97;MQ0=7;QD=28.71;SNPEFF_AMINO_ACID_CHANGE=V417;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22148897_22157609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397126    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3273,271,0
19    22156992    rs2007506    C    T    2711.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=33.89;SNPEFF_AMINO_ACID_CHANGE=E282K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22148897_22157609;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397126    GT:AD:DP:GQ:PL    1/1:1,79:80:99:2744,205,0
19    22157302    rs10419899    G    A    3664.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6517;MQ=59.97;MQ0=0;QD=33.93;SNPEFF_AMINO_ACID_CHANGE=Y178;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22148897_22157609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397126    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3665,265,0
19    22171880    rs4574045    C    T    468.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397126    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:502,42,0
19    22193451    rs2040654    C    G    316.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF208;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397126    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:350,30,0
19    22235307    rs415291    C    G    378.42    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.961;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.088;QD=9.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397123    GT:AD:DP:GQ:PL    0/1:21,18:39:99:408,0,734
19    22235491    rs387343    T    G    1296.13    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=0.313;DB;DP=81;Dels=0.0;FS=1.148;HRun=1;HaplotypeScore=0.8941;MQ=59.48;MQ0=0;MQRankSum=0.601;QD=16.0;ReadPosRankSum=0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397123    GT:AD:DP:GQ:PL    0/1:33,48:81:99:1326,0,1017
19    22235526    rs387315    T    C    676.45    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.419;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.467;QD=12.53;ReadPosRankSum=0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397123    GT:AD:DP:GQ:PL    0/1:24,30:54:99:706,0,753
19    22235577    rs408312    C    T    300.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.356;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.804;QD=12.03;ReadPosRankSum=0.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397123    GT:AD:DP:GQ:PL    0/1:15,10:25:99:331,0,375
19    22255799    .    T    TA    1023.30    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=5.47;DP=63;FS=0.0;HRun=0;HaplotypeScore=285.8122;IndelType=I;MQ=59.79;MQ0=0;MQRankSum=-0.599;QD=16.24;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397123    GT:AD:DP:GQ:PL    0/1:29,33:63:99:1062,0,997
19    22256396    rs3752163    G    A    1905.72    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.969;DB;DP=127;Dels=0.0;FS=0.957;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;MQRankSum=0.66;QD=15.01;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397123    GT:AD:DP:GQ:PL    0/1:68,59:127:99:1936,0,2204
19    22362527    rs1378915    C    A    578.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.12;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:611,45,0
19    22363493    rs78855594    G    A    897.24    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=1.36;DB;DP=123;Dels=0.0;FS=16.681;HRun=0;HaplotypeScore=3.4738;MQ=48.36;MQ0=11;MQRankSum=-6.262;QD=7.29;ReadPosRankSum=2.089;SNPEFF_AMINO_ACID_CHANGE=C342;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:70,53:123:99:927,0,2189
19    22363508    rs78050927    G    A    1033.27    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.292;DB;DP=138;Dels=0.0;FS=13.566;HRun=0;HaplotypeScore=3.2854;MQ=43.52;MQ0=21;MQRankSum=-5.255;QD=7.49;ReadPosRankSum=2.878;SNPEFF_AMINO_ACID_CHANGE=Y337;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:72,66:138:99:1063,0,2126
19    22363589    rs80146743    C    T    1070.92    MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.948;DB;DP=149;Dels=0.0;FS=8.02;HRun=2;HaplotypeScore=0.8321;MQ=35.26;MQ0=27;MQRankSum=-1.922;QD=7.19;ReadPosRankSum=0.235;SNPEFF_AMINO_ACID_CHANGE=K310;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:81,68:149:99:1101,0,1981
19    22363615    rs76328545    T    C    766.53    MQFilter40    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.861;DB;DP=128;Dels=0.0;FS=2.784;HRun=0;HaplotypeScore=3.8066;MQ=39.81;MQ0=14;MQRankSum=-3.482;QD=5.99;ReadPosRankSum=0.209;SNPEFF_AMINO_ACID_CHANGE=I302V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:79,49:128:99:797,0,2078
19    22363631    rs75683199    G    A    331.37    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.783;DB;DP=111;Dels=0.0;FS=5.883;HRun=1;HaplotypeScore=10.6483;MQ=43.85;MQ0=8;MQRankSum=-4.134;QD=2.96;ReadPosRankSum=1.545;SNPEFF_AMINO_ACID_CHANGE=L296;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:74,36:111:99:361,0,2155
19    22363634    rs76456473    C    A    309.69    HaplotypeScoreFilter13    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.11;DB;DP=109;Dels=0.0;FS=3.218;HRun=0;HaplotypeScore=13.6028;MQ=44.92;MQ0=5;MQRankSum=-4.381;QD=2.84;ReadPosRankSum=1.252;SNPEFF_AMINO_ACID_CHANGE=K295N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:75,32:109:99:340,0,2159
19    22363650    rs79444294    G    A    325.31    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=108;Dels=0.0;FS=5.131;HRun=2;HaplotypeScore=7.8311;MQ=47.33;MQ0=2;MQRankSum=-4.365;QD=3.01;ReadPosRankSum=0.896;SNPEFF_AMINO_ACID_CHANGE=S290F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:81,27:108:99:355,0,2344
19    22363826    rs7252593    G    C    486.31    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.995;DB;DP=116;Dels=0.0;FS=17.098;HRun=2;HaplotypeScore=3.9242;MQ=48.36;MQ0=0;MQRankSum=1.115;QD=4.19;ReadPosRankSum=-2.008;SNPEFF_AMINO_ACID_CHANGE=G231;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:91,25:116:99:516,0,2647
19    22363844    rs7252604    G    A    66.67    QDFilter2    AB=0.891;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.628;DB;DP=92;Dels=0.0;FS=20.103;HRun=0;HaplotypeScore=1.9448;MQ=48.0;MQ0=0;MQRankSum=0.583;QD=0.72;ReadPosRankSum=-3.017;SNPEFF_AMINO_ACID_CHANGE=Y225;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22361903_22364388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:82,10:92:96.66:97,0,2535
19    22364492    rs10419666    A    T    157.89    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=26.32;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    0/1:1,5:6:21.26:188,0,21
19    22375868    rs8104929    C    T    3987.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=G27E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22375818_22375913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    1/1:0,127:127:99:3987,316,0
19    22379587    rs2360001    G    T    2989.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.59;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_22379402_22379753;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF676;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397121    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3023,226,0
19    22398525    rs281185    A    G    2153.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.82;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,57:58:99:2187,163,0
19    22398599    rs112477676    TCC    T    358.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=10;HaplotypeScore=121.6901;IndelType=D;MQ=48.37;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:4,13:17:36.09:401,36,0
19    22486535    rs9304996    A    G    4087.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=59.41;MQ0=0;QD=34.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF729;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357491    GT:AD:DP:GQ:PL    1/1:0,118:118:99:4087,301,0
19    22486837    rs34014506    A    AT    61.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=20;FS=0.0;HRun=20;HaplotypeScore=266.6976;IndelType=I;MQ=49.96;MQ0=0;MQRankSum=0.751;QD=3.05;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF729;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357491    GT:AD:DP:GQ:PL    1/1:14,5:20:8.52:102,9,0
19    22498943    rs8104705    T    C    2759.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.7;MQ0=2;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF729;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357491    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2792,235,0
19    22574969    .    A    G    36.64    MQFilter40;QDFilter2    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=4.083;DP=144;Dels=0.0;FS=30.172;HRun=0;HaplotypeScore=0.9665;MQ=23.71;MQ0=36;MQRankSum=-3.2;QD=0.25;ReadPosRankSum=-0.787;SNPEFF_AMINO_ACID_CHANGE=G356;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22573899_22575783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF98;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357774    GT:AD:DP:GQ:PL    0/1:107,37:144:66.63:67,0,2018
19    22574988    .    T    C    102.69    MQFilter40;QDFilter2    AB=0.734;AC=1;AF=0.50;AN=2;BaseQRankSum=3.61;DP=139;Dels=0.0;FS=23.395;HRun=0;HaplotypeScore=3.642;MQ=21.31;MQ0=49;MQRankSum=-2.18;QD=0.74;ReadPosRankSum=1.207;SNPEFF_AMINO_ACID_CHANGE=Y350C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22573899_22575783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF98;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357774    GT:AD:DP:GQ:PL    0/1:102,37:139:99:133,0,1597
19    22575106    .    C    T    34.72    MQFilter40;QDFilter2    AB=0.78;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.46;MQ0=110;MQRankSum=-1.318;QD=0.25;ReadPosRankSum=-0.547;SNPEFF_AMINO_ACID_CHANGE=A311T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22573899_22575783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF98;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357774    GT:AD:DP:GQ:PL    0/1:110,31:141:64.71:65,0,219
19    22836598    rs148651059    G    A    77.45    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.177;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.03;MQ0=2;MQRankSum=-0.986;QD=2.87;ReadPosRankSum=0.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:20,7:27:99:107,0,616
19    22836711    rs35023140    T    C    464.08    MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=3.118;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=32.88;MQ0=8;MQRankSum=-0.693;QD=5.16;ReadPosRankSum=-1.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:58,32:90:99:494,0,1341
19    22836848    rs3745117    T    C    582.31    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.752;DB;DP=87;Dels=0.0;FS=4.396;HRun=0;HaplotypeScore=2.7256;MQ=46.53;MQ0=3;MQRankSum=-4.492;QD=6.69;ReadPosRankSum=0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:48,39:87:99:612,0,1429
19    22836858    rs35225656    G    A    627.23    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6913;MQ=47.93;MQ0=2;MQRankSum=-2.909;QD=8.48;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:44,30:74:99:657,0,1241
19    22836873    rs61144086    GA    G    349.02    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=3.331;DB;DP=64;FS=3.274;HRun=12;HaplotypeScore=350.9215;IndelType=D;MQ=50.67;MQ0=0;MQRankSum=0.274;QD=5.37;ReadPosRankSum=-0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:40,24:64:99:388,0,669
19    22836980    rs3745116    T    A    116.18    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.91;MQ0=0;MQRankSum=-1.38;QD=16.6;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:2,5:7:65.46:146,0,65
19    22846623    rs71355986    G    A    250.09    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=2.601;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.95;MQ0=1;MQRankSum=-3.611;QD=7.36;ReadPosRankSum=1.703;SNPEFF_AMINO_ACID_CHANGE=R51Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22846602_22850472;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:21,13:34:99:280,0,655
19    22847072    rs146300593    G    C    297.20    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.017;DB;DP=60;Dels=0.0;FS=5.904;HRun=0;HaplotypeScore=0.0;MQ=24.64;MQ0=25;MQRankSum=-2.983;QD=4.95;ReadPosRankSum=-1.05;SNPEFF_AMINO_ACID_CHANGE=E201Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22846602_22850472;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:36,24:60:99:327,0,405
19    22847084    rs139985933    G    T    287.37    MQFilter40    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.335;DB;DP=61;Dels=0.0;FS=1.54;HRun=0;HaplotypeScore=0.0;MQ=21.11;MQ0=31;MQRankSum=-3.223;QD=4.71;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=A205S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22846602_22850472;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:36,25:61:99:317,0,310
19    22847179    .    A    G    31.05    MQFilter40;QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.31;MQ0=76;MQRankSum=-0.884;QD=0.34;ReadPosRankSum=-0.295;SNPEFF_AMINO_ACID_CHANGE=Q236;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22846602_22850472;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:65,26:91:45.11:61,0,45
19    22847487    .    G    A    222.54    MQFilter40    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=1.172;DP=81;Dels=0.0;FS=8.039;HRun=0;HaplotypeScore=0.0;MQ=16.56;MQ0=35;MQRankSum=1.57;QD=2.75;ReadPosRankSum=0.984;SNPEFF_AMINO_ACID_CHANGE=C339Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22846602_22850472;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:60,21:81:99:253,0,484
19    22848028    rs3745115    G    C    331.37    MQFilter40    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.346;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3886;MQ=18.96;MQ0=35;MQRankSum=1.433;QD=4.04;ReadPosRankSum=0.799;SNPEFF_AMINO_ACID_CHANGE=K519N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22846602_22850472;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF492;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456783    GT:AD:DP:GQ:PL    0/1:58,24:82:99:361,0,513
19    22868096    rs55716469    A    G    636.90    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.617;DB;DP=62;Dels=0.0;FS=1.001;HRun=1;HaplotypeScore=0.0;MQ=58.79;MQ0=0;MQRankSum=-0.542;QD=10.27;ReadPosRankSum=0.137;SNPEFF_AMINO_ACID_CHANGE=Q43R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:38,24:62:99:667,0,1245
19    22868147    rs56353996    G    A    751.35    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.947;DB;DP=74;Dels=0.0;FS=4.693;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=-1.732;QD=10.15;ReadPosRankSum=0.633;SNPEFF_AMINO_ACID_CHANGE=C60Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:44,30:74:99:781,0,1324
19    22868205    rs597906    T    C    523.76    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=1.353;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=55.33;MQ0=0;MQRankSum=-1.597;QD=10.69;ReadPosRankSum=-0.804;SNPEFF_AMINO_ACID_CHANGE=D79;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:29,20:49:99:554,0,1017
19    22868445    rs56224405    C    T    617.95    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.229;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9157;MQ=55.75;MQ0=0;MQRankSum=-2.156;QD=9.66;ReadPosRankSum=-1.782;SNPEFF_AMINO_ACID_CHANGE=P159;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:40,24:64:99:648,0,1281
19    22868470    rs55675097    G    T    606.62    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7676;MQ=55.65;MQ0=0;MQRankSum=-2.899;QD=9.05;ReadPosRankSum=2.093;SNPEFF_AMINO_ACID_CHANGE=A168S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:44,23:67:99:637,0,1424
19    22868479    rs56110985    C    T    680.36    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.669;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6229;MQ=54.55;MQ0=0;MQRankSum=-4.2;QD=10.31;ReadPosRankSum=0.872;SNPEFF_AMINO_ACID_CHANGE=R171W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:39,27:66:99:710,0,1200
19    22868484    rs56384546    C    T    604.48    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=67;Dels=0.0;FS=0.979;HRun=1;HaplotypeScore=1.6316;MQ=54.93;MQ0=0;MQRankSum=-3.854;QD=9.02;ReadPosRankSum=0.513;SNPEFF_AMINO_ACID_CHANGE=L172;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:40,27:67:99:634,0,1259
19    22868541    rs56356904    G    A    728.06    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=1.755;DB;DP=73;Dels=0.0;FS=3.38;HRun=1;HaplotypeScore=0.9997;MQ=52.26;MQ0=1;MQRankSum=-3.217;QD=9.97;ReadPosRankSum=1.456;SNPEFF_AMINO_ACID_CHANGE=E191;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:38,35:73:99:758,0,1198
19    22868629    rs56047731    A    T    229.94    PASS    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.556;DB;DP=81;Dels=0.0;FS=22.64;HRun=0;HaplotypeScore=1.8154;MQ=53.14;MQ0=3;MQRankSum=-5.967;QD=2.84;ReadPosRankSum=2.007;SNPEFF_AMINO_ACID_CHANGE=S221C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:61,18:81:99:260,0,1950
19    22868799    rs62120298    G    T    126.94    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.033;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.71;MQ0=2;MQRankSum=-4.824;QD=2.59;ReadPosRankSum=-0.867;SNPEFF_AMINO_ACID_CHANGE=W277C;SNPEFF_CODON_CHANGE=tgG/tgT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:35,13:49:99:157,0,1102
19    22868965    rs55638018    T    A    185.92    PASS    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.16;DB;DP=84;Dels=0.0;FS=12.541;HRun=1;HaplotypeScore=0.9665;MQ=46.19;MQ0=2;MQRankSum=-4.896;QD=2.21;ReadPosRankSum=-1.167;SNPEFF_AMINO_ACID_CHANGE=C333S;SNPEFF_CODON_CHANGE=Tgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:65,19:84:99:216,0,1993
19    22868983    rs76090733    C    T    457.11    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.233;DB;DP=100;Dels=0.0;FS=12.899;HRun=0;HaplotypeScore=0.7887;MQ=47.4;MQ0=1;MQRankSum=-5.14;QD=4.57;ReadPosRankSum=1.172;SNPEFF_AMINO_ACID_CHANGE=R339W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:75,25:100:99:487,0,2025
19    22869030    rs78524936    G    A    737.58    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DB;DP=96;Dels=0.0;FS=14.684;HRun=2;HaplotypeScore=0.6651;MQ=46.79;MQ0=5;MQRankSum=-3.769;QD=7.68;ReadPosRankSum=0.686;SNPEFF_AMINO_ACID_CHANGE=K354;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22867969_22869468;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:59,37:96:99:768,0,1897
19    22869486    rs71357917    C    T    989.99    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=55.04;MQ0=1;MQRankSum=1.533;QD=10.88;ReadPosRankSum=-0.483;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:56,35:91:99:1020,0,1595
19    22869592    rs35335083    A    C    666.08    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.873;DB;DP=53;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=0.0;MQ=57.86;MQ0=0;MQRankSum=0.982;QD=12.57;ReadPosRankSum=1.845;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011467.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340708    GT:AD:DP:GQ:PL    0/1:28,25:53:99:696,0,941
19    22939096    rs55681804    T    G    1112.71    PASS    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=1.456;DB;DP=79;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.267;QD=14.08;ReadPosRankSum=1.315;SNPEFF_AMINO_ACID_CHANGE=T1009P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22939007_22939188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:35,44:79:99:1143,0,1060
19    22939326    rs56115674    G    A    1018.20    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=4.371;DB;DP=73;Dels=0.0;FS=3.242;HRun=0;HaplotypeScore=1.6281;MQ=58.79;MQ0=0;MQRankSum=-0.4;QD=13.95;ReadPosRankSum=-0.942;SNPEFF_AMINO_ACID_CHANGE=R949C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22939239_22939580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:38,35:73:99:1048,0,1118
19    22939456    rs56091278    T    G    331.63    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.083;DB;DP=61;Dels=0.0;FS=2.475;HRun=1;HaplotypeScore=0.0;MQ=57.08;MQ0=1;MQRankSum=-1.919;QD=5.35;ReadPosRankSum=-1.788;SNPEFF_AMINO_ACID_CHANGE=K905N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22939239_22939580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:43,18:61:99:362,0,1422
19    22939468    rs55711951    C    T    162.58    PASS    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=54;Dels=0.0;FS=1.422;HRun=1;HaplotypeScore=0.0;MQ=56.58;MQ0=1;MQRankSum=-3.671;QD=3.01;ReadPosRankSum=-2.785;SNPEFF_AMINO_ACID_CHANGE=S901;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22939239_22939580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:43,11:54:99:193,0,1392
19    22939472    rs55891931    A    G    40.03    QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.561;DB;DP=56;Dels=0.0;FS=3.511;HRun=1;HaplotypeScore=0.0;MQ=56.7;MQ0=1;MQRankSum=-4.333;QD=0.71;ReadPosRankSum=-2.638;SNPEFF_AMINO_ACID_CHANGE=F900S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22939239_22939580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:47,9:56:70.03:70,0,1627
19    22939540    rs62119149    T    G    691.80    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=77;Dels=0.0;FS=12.712;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=1;MQRankSum=2.811;QD=8.98;ReadPosRankSum=2.214;SNPEFF_AMINO_ACID_CHANGE=K877N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22939239_22939580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:49,28:77:99:722,0,1708
19    22939675    rs62119150    T    C    858.67    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.741;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3001;MQ=59.63;MQ0=0;MQRankSum=-0.346;QD=11.15;ReadPosRankSum=0.451;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:44,33:77:99:889,0,1385
19    22940046    rs35012661    C    A    1050.60    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.939;DB;DP=87;Dels=0.0;FS=0.884;HRun=0;HaplotypeScore=0.0;MQ=52.49;MQ0=4;MQRankSum=-4.775;QD=12.08;ReadPosRankSum=-0.851;SNPEFF_AMINO_ACID_CHANGE=R762M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22939741_22940136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:45,42:87:99:1081,0,1406
19    22940192    .    A    AG    1201.59    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.71;DP=74;FS=1.96;HRun=0;HaplotypeScore=170.7856;IndelType=I;MQ=52.87;MQ0=3;MQRankSum=-3.136;QD=14.65;ReadPosRankSum=0.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:43,38:74:99:1241,0,1459
19    22940659    rs59621958    C    T    1781.41    PASS    AB=0.33;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=56.87;MQ0=0;MQRankSum=-0.156;QD=18.37;ReadPosRankSum=-0.404;SNPEFF_AMINO_ACID_CHANGE=K593;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22940244_22941882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:32,65:97:99:1811,0,973
19    22940694    rs62119157    C    T    1955.45    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.712;DB;DP=110;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=56.14;MQ0=0;MQRankSum=1.913;QD=17.78;ReadPosRankSum=-1.375;SNPEFF_AMINO_ACID_CHANGE=E582K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22940244_22941882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:42,68:110:99:1985,0,1313
19    22940827    rs142615427    T    C    873.75    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.859;DB;DP=106;Dels=0.0;FS=0.787;HRun=1;HaplotypeScore=2.5193;MQ=43.16;MQ0=8;MQRankSum=-1.033;QD=8.24;ReadPosRankSum=0.026;SNPEFF_AMINO_ACID_CHANGE=K537;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22940244_22941882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:63,42:106:99:904,0,1887
19    22940899    rs59017672    G    A    941.14    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=93;Dels=0.0;FS=1.798;HRun=2;HaplotypeScore=0.9159;MQ=49.78;MQ0=3;MQRankSum=-2.161;QD=10.12;ReadPosRankSum=1.116;SNPEFF_AMINO_ACID_CHANGE=H513;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22940244_22941882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:51,41:93:99:971,0,1559
19    22941071    rs144632185    T    C    1652.55    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=0.588;DB;DP=103;Dels=0.0;FS=2.639;HRun=0;HaplotypeScore=1.6828;MQ=56.47;MQ0=0;MQRankSum=-1.826;QD=16.04;ReadPosRankSum=-0.084;SNPEFF_AMINO_ACID_CHANGE=N456S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22940244_22941882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:47,56:103:99:1683,0,1462
19    22941591    rs62119159    A    T    1548.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.434;DB;DP=116;Dels=0.0;FS=2.464;HRun=2;HaplotypeScore=0.0;MQ=55.96;MQ0=1;MQRankSum=0.652;QD=13.35;ReadPosRankSum=-1.728;SNPEFF_AMINO_ACID_CHANGE=C283S;SNPEFF_CODON_CHANGE=Tgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22940244_22941882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:58,58:116:99:1578,0,1887
19    22941617    rs58653025    T    C    1305.88    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=0.548;DB;DP=118;Dels=0.0;FS=2.409;HRun=1;HaplotypeScore=1.6918;MQ=53.18;MQ0=2;MQRankSum=-1.975;QD=10.97;ReadPosRankSum=0.441;SNPEFF_AMINO_ACID_CHANGE=E274G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22940244_22941882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:63,55:118:99:1336,0,1992
19    22942061    rs61753878    A    C    656.71    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.808;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.5;MQ0=0;MQRankSum=1.103;QD=14.28;ReadPosRankSum=-0.444;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:21,24:46:99:687,0,612
19    22942325    rs7255780    G    C    1365.82    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.496;DB;DP=119;Dels=0.0;FS=4.92;HRun=1;HaplotypeScore=1.9768;MQ=59.61;MQ0=0;MQRankSum=-1.07;QD=11.48;ReadPosRankSum=-0.203;SNPEFF_AMINO_ACID_CHANGE=A150G;SNPEFF_CODON_CHANGE=gCt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22942219_22942484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:71,48:119:99:1396,0,2298
19    22942335    rs61740110    G    A    1429.98    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.995;DB;DP=128;Dels=0.0;FS=5.955;HRun=0;HaplotypeScore=2.2788;MQ=59.64;MQ0=0;MQRankSum=-0.721;QD=11.17;ReadPosRankSum=1.381;SNPEFF_AMINO_ACID_CHANGE=H147Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22942219_22942484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:80,48:128:99:1460,0,2488
19    22952111    rs34726149    A    G    2052.07    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.304;DB;DP=140;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7239;MQ=60.0;MQ0=0;MQRankSum=0.188;QD=14.66;ReadPosRankSum=1.709;SNPEFF_AMINO_ACID_CHANGE=W28R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_22952000_22952126;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:64,76:140:99:2082,0,1917
19    22952291    rs11665881    T    C    79.01    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=8.78;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397104    GT:AD:DP:GQ:PL    0/1:5,4:9:99:109,0,166
19    23040182    rs58238799    G    T    408.49    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=26;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.9967;MQ=59.11;MQ0=0;MQRankSum=1.157;QD=15.71;ReadPosRankSum=-0.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,14:26:99:438,0,405
19    23041324    rs8103911    C    T    182.46    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=22.81;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,6:8:57.80:212,0,58
19    23328940    rs7247102    G    A    471.24    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=37;Dels=0.0;FS=4.815;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.805;QD=12.74;ReadPosRankSum=-1.322;SNPEFF_AMINO_ACID_CHANGE=G365E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23328073_23330017;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF730;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327867    GT:AD:DP:GQ:PL    0/1:19,18:37:99:501,0,614
19    23405457    rs10411741    T    G    764.32    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.127;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=59.65;MQ0=0;MQRankSum=-0.894;QD=11.58;ReadPosRankSum=-2.007;SNPEFF_AMINO_ACID_CHANGE=G530;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23404401_23406820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF724P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418100    GT:AD:DP:GQ:PL    0/1:38,28:66:99:794,0,1238
19    23405580    rs10412126    T    C    1331.24    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=98;Dels=0.0;FS=2.783;HRun=0;HaplotypeScore=1.8824;MQ=59.76;MQ0=0;MQRankSum=1.243;QD=13.58;ReadPosRankSum=1.601;SNPEFF_AMINO_ACID_CHANGE=L489;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23404401_23406820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF724P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418100    GT:AD:DP:GQ:PL    0/1:53,45:98:99:1361,0,1571
19    23406165    rs2885604    T    C    419.07    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=28;Dels=0.0;FS=1.549;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.141;QD=14.97;ReadPosRankSum=-0.941;SNPEFF_AMINO_ACID_CHANGE=S294;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23404401_23406820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF724P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418100    GT:AD:DP:GQ:PL    0/1:11,17:28:99:449,0,298
19    23406801    rs8110795    G    C    533.27    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.899;DB;DP=56;Dels=0.0;FS=17.177;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=1.377;QD=9.52;ReadPosRankSum=-0.18;SNPEFF_AMINO_ACID_CHANGE=A82;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23404401_23406820;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF724P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418100    GT:AD:DP:GQ:PL    0/1:36,20:56:99:563,0,1171
19    23413937    rs7256859    A    G    578.33    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=0.574;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=19.28;ReadPosRankSum=-1.308;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF724P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418100    GT:AD:DP:GQ:PL    0/1:11,19:30:99:608,0,323
19    23414167    rs4932841    T    G    1396.82    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.062;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.909;MQ=59.61;MQ0=0;MQRankSum=-0.428;QD=11.74;ReadPosRankSum=-0.456;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF724P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418100    GT:AD:DP:GQ:PL    0/1:57,61:119:99:1427,0,1923
19    23414726    rs8100344    G    A    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF724P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418100    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    23542697    rs1821845    G    C    743.78    PASS    AB=0.616;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=73;Dels=0.0;FS=0.917;HRun=2;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=0.289;QD=10.19;ReadPosRankSum=-0.857;SNPEFF_AMINO_ACID_CHANGE=G1028;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23540501_23545527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF91;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300619    GT:AD:DP:GQ:PL    0/1:45,28:73:99:774,0,1418
19    23543834    rs7255296    C    T    855.92    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.88;DB;DP=82;Dels=0.0;FS=6.3;HRun=2;HaplotypeScore=0.9933;MQ=46.41;MQ0=2;MQRankSum=3.43;QD=10.44;ReadPosRankSum=1.906;SNPEFF_AMINO_ACID_CHANGE=K617;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23542205_23545527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF91;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397082    GT:AD:DP:GQ:PL    0/1:48,34:82:99:886,0,1178
19    23544625    rs403356    C    T    205.47    MQFilter40    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.012;DB;DP=48;Dels=0.0;FS=5.319;HRun=3;HaplotypeScore=1.9747;MQ=39.03;MQ0=0;MQRankSum=-1.155;QD=4.28;ReadPosRankSum=0.607;SNPEFF_AMINO_ACID_CHANGE=A354T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23542205_23545527;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF91;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397082    GT:AD:DP:GQ:PL    0/1:36,12:48:99:235,0,1042
19    23545004    rs296092    G    A    1232.30    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.087;DB;DP=69;Dels=0.0;FS=6.677;HRun=1;HaplotypeScore=1.6498;MQ=58.99;MQ0=0;MQRankSum=0.18;QD=17.86;ReadPosRankSum=-1.306;SNPEFF_AMINO_ACID_CHANGE=I227;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23542205_23545527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF91;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397082    GT:AD:DP:GQ:PL    0/1:26,43:69:99:1262,0,860
19    23556421    rs11085576    A    C    366.91    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.285;DB;DP=32;Dels=0.0;FS=7.935;HRun=0;HaplotypeScore=1.7987;MQ=59.28;MQ0=0;MQRankSum=2.152;QD=11.47;ReadPosRankSum=-1.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300619    GT:AD:DP:GQ:PL    0/1:15,17:32:99:397,0,486
19    23558016    rs2885846    A    G    627.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300619    GT:AD:DP:GQ:PL    1/1:0,16:17:48.16:660,48,0
19    23675420    rs12185481    C    T    962.07    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.11;DB;DP=63;Dels=0.0;FS=9.072;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=0.103;QD=15.27;ReadPosRankSum=2.055;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,32:63:99:992,0,915
19    23687865    rs77384424    C    T    246.54    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.293;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=14.5;ReadPosRankSum=-0.927;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,10:17:99:277,0,242
19    23780114    rs2463082    G    C    1389.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.18;MQ0=0;QD=32.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-359H18.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463110    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1423,114,0
19    23837145    rs11671053    A    G    489.76    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=35;Dels=0.0;FS=1.32;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-1.436;QD=13.99;ReadPosRankSum=-0.875;SNPEFF_AMINO_ACID_CHANGE=V197A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23835708_23837508;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    0/1:17,18:35:99:520,0,565
19    23837365    rs4380159    A    C    2748.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=32.72;SNPEFF_AMINO_ACID_CHANGE=L124V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23835708_23837508;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2782,214,0
19    23837633    rs6511461    T    C    237.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=18.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:0,13:13:27.01:270,27,0
19    23837634    rs6511462    G    A    237.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=18.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:0,13:13:27.01:270,27,0
19    23837667    rs6511463    A    G    448.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8088;MQ=56.4;MQ0=0;QD=22.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:1,19:20:39.12:481,39,0
19    23837670    rs67093085    G    GA    171.84    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=187.8803;IndelType=I;MQ=56.4;MQ0=0;MQRankSum=-0.906;QD=8.59;ReadPosRankSum=-1.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    0/1:9,10:20:48.66:211,0,49
19    23845038    rs10418600    T    G    1998.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=36.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2031,153,0
19    23845042    rs10418602    T    C    1713.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=31.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1747,135,0
19    23845795    rs78938154    CA    C    1255.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=65;FS=5.254;HRun=11;HaplotypeScore=231.3882;IndelType=D;MQ=60.95;MQ0=0;MQRankSum=-1.124;QD=19.32;ReadPosRankSum=0.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:9,53:65:99:1298,137,0
19    23869684    rs4020520    G    A    508.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:542,42,0
19    23869823    rs2364624    T    G    1935.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=34.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1968,147,0
19    23869941    rs2364625    A    G    1322.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.79;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_23869833_23870017;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF675;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359788    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1356,99,0
19    23926332    rs10405811    G    A    529.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000528059    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:562,42,0
19    23926708    rs1852433    A    G    3466.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.81;MQ0=0;QD=35.74;SNPEFF_AMINO_ACID_CHANGE=H479;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23926160_23928125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395385    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3467,250,0
19    23927252    rs1818990    C    T    3742.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.37;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=R298K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23926160_23928125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395385    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3742,280,0
19    23927468    rs1818989    A    G    3304.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=L226S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23926160_23928125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395385    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3305,247,0
19    23928102    rs7248674    C    G    1775.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=-0.294;QD=33.5;ReadPosRankSum=-0.948;SNPEFF_AMINO_ACID_CHANGE=D15H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_23926160_23928125;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395385    GT:AD:DP:GQ:PL    1/1:1,52:53:99:1809,111,0
19    23938360    .    AAC    A    228.60    PASS    AB=0.888;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DP=87;FS=0.0;HRun=0;HaplotypeScore=594.4061;IndelType=D;MQ=51.58;MQ0=0;MQRankSum=-2.096;QD=2.63;ReadPosRankSum=-0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395385    GT:AD:DP:GQ:PL    0/1:76,6:87:99:268,0,191
19    23938394    rs74175771    CACACACAT    C    1198.39    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=64;FS=0.0;HRun=0;HaplotypeScore=619.2765;IndelType=D;MQ=51.49;MQ0=0;MQRankSum=-0.446;QD=18.72;ReadPosRankSum=0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395385    GT:AD:DP:GQ:PL    0/1:39,25:64:99:1237,0,2141
19    23941339    rs6417219    T    C    157.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395385    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:190,15,0
19    23941459    rs6417220    G    A    1404.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF681;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395385    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1437,114,0
19    24009893    rs7245809    G    A    170.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.34;MQ0=0;QD=18.94;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSAP58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354585    GT:AD:DP:GQ:PL    1/1:0,9:9:23.98:203,24,0
19    24009894    rs7245586    C    T    170.46    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.34;MQ0=0;QD=18.94;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSAP58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354585    GT:AD:DP:GQ:PL    1/1:0,9:9:23.98:203,24,0
19    24010071    rs9305011    C    G    211.29    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.47;MQ0=23;QD=4.7;SNPEFF_AMINO_ACID_CHANGE=H36Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_24009921_24010917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSAP58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354585    GT:AD:DP:GQ:PL    1/1:0,45:45:24.03:244,24,0
19    24010666    rs142514958    T    G    616.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.1;MQ0=20;QD=8.56;SNPEFF_AMINO_ACID_CHANGE=S235A;SNPEFF_CODON_CHANGE=Tct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_24009921_24010917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSAP58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354585    GT:AD:DP:GQ:PL    1/1:0,72:72:77.82:649,78,0
19    24010719    rs71335712    A    G    284.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.91;MQ0=45;QD=3.65;SNPEFF_AMINO_ACID_CHANGE=V252;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_24009921_24010917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSAP58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354585    GT:AD:DP:GQ:PL    1/1:20,57:78:33.03:318,33,0
19    24010781    rs10460212    C    T    355.08    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.829;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.86;MQ0=68;MQRankSum=-0.226;QD=3.9;ReadPosRankSum=1.432;SNPEFF_AMINO_ACID_CHANGE=T273M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_24009921_24010917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSAP58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354585    GT:AD:DP:GQ:PL    1/1:40,51:91:14.40:388,14,0
19    24010928    .    A    AAAAG    763.37    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=106.2352;IndelType=I;MQ=40.43;MQ0=0;QD=42.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPSAP58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354585    GT:AD:DP:GQ:PL    1/1:4,13:17:47.37:805,47,0
19    24097891    rs3764588    T    A    115.70    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.509;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.509;QD=5.03;ReadPosRankSum=0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF726;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322487    GT:AD:DP:GQ:PL    0/1:15,8:23:99:146,0,512
19    24098054    rs3764586    A    T    32.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF726;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
19    24115369    rs56014490    T    C    584.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.576;DB;DP=36;Dels=0.0;FS=1.926;HRun=0;HaplotypeScore=2.667;MQ=59.36;MQ0=0;MQRankSum=-0.398;QD=16.25;ReadPosRankSum=0.175;SNPEFF_AMINO_ACID_CHANGE=L151;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_24115145_24116754;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF726;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322487    GT:AD:DP:GQ:PL    0/1:16,20:36:99:615,0,522
19    30018052    rs4804888    G    T    56.85    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=6.32;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335523    GT:AD:DP:GQ:PL    0/1:5,4:9:86.85:87,0,145
19    30099457    rs1465585    A    G    954.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221770    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:988,78,0
19    30102951    rs8103310    G    A    666.17    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=3.948;DB;DP=43;Dels=0.0;FS=4.591;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.567;QD=15.49;ReadPosRankSum=0.425;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221770    GT:AD:DP:GQ:PL    0/1:21,22:43:99:696,0,595
19    30106130    rs72228837    C    CT    77.80    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=31;FS=0.0;HRun=17;HaplotypeScore=293.1143;IndelType=I;MQ=54.56;MQ0=0;MQRankSum=0.067;QD=2.51;ReadPosRankSum=2.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221770    GT:AD:DP:GQ:PL    0/1:19,8:31:99:117,0,110
19    30193721    rs10424582    G    A    1355.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=T108;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_30190483_30193884;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323670    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1388,108,0
19    30313523    rs67602822    CCTT    C    2038.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=7.446;DB;DP=98;FS=3.267;HRun=0;HaplotypeScore=489.6202;IndelType=D;MQ=59.22;MQ0=0;MQRankSum=-1.311;QD=20.8;ReadPosRankSum=-1.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262643    GT:AD:DP:GQ:PL    0/1:49,49:98:99:2078,0,2767
19    30313576    rs3218069    C    T    788.95    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=4.243;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.19;MQ0=0;MQRankSum=0.37;QD=15.47;ReadPosRankSum=-0.779;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262643    GT:AD:DP:GQ:PL    0/1:24,27:51:99:819,0,627
19    30313603    rs3218070    C    G    574.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.474;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.85;MQ0=0;MQRankSum=0.467;QD=15.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262643    GT:AD:DP:GQ:PL    0/1:19,19:38:99:604,0,573
19    30314666    rs7257694    C    T    415.78    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=3.245;DB;DP=39;Dels=0.0;FS=1.321;HRun=0;HaplotypeScore=0.0;MQ=56.98;MQ0=0;MQRankSum=-0.829;QD=10.66;ReadPosRankSum=0.351;SNPEFF_AMINO_ACID_CHANGE=S362;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_30314562_30315214;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCNE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357943    GT:AD:DP:GQ:PL    0/1:20,19:39:99:446,0,546
19    30433668    rs1990903    C    T    104.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312051    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:137,12,0
19    30500118    rs112490410    GTGA    G    555.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=95.0528;IndelType=D;MQ=62.31;MQ0=0;QD=24.14;SNPEFF_AMINO_ACID_CHANGE=SD222S;SNPEFF_CODON_CHANGE=agtgat/agt;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_19_30499912_30500260;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392271    GT:AD:DP:GQ:PL    1/1:7,16:23:45.13:597,45,0
19    30529076    rs71333430    A    AGAT    4590.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.0;HRun=0;HaplotypeScore=208.5282;IndelType=I;MQ=57.41;MQ0=0;QD=59.62;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:3,72:77:99:4591,220,0
19    30934385    rs10411126    G    C    1751.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF536;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355537    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1784,132,0
19    32838287    rs7256708    A    C    193.10    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=24.14;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF507;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311921    GT:AD:DP:GQ:PL    0/1:1,7:8:18.94:223,0,19
19    32873698    rs2270399    A    G    1710.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.55;MQ0=0;QD=33.53;SNPEFF_AMINO_ACID_CHANGE=S857;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_32873623_32878572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF507;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311921    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1743,132,0
19    32927635    rs16967110    C    T    366.67    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.188;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.124;QD=19.3;ReadPosRankSum=-1.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392248    GT:AD:DP:GQ:PL    0/1:8,11:19:99:397,0,271
19    32946043    rs2903738    A    T    238.73    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.203;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.304;QD=11.94;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319326    GT:AD:DP:GQ:PL    0/1:11,9:20:99:269,0,374
19    32949099    rs12327772    C    G    394.19    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.462;DB;DP=30;Dels=0.0;FS=6.68;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.895;QD=13.14;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319326    GT:AD:DP:GQ:PL    0/1:14,15:30:99:424,0,493
19    32959425    rs4513218    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319326    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    32970712    rs16967139    A    G    103.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.89;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPY19L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319326    GT:AD:DP:GQ:PL    0/1:4,4:8:99:133,0,145
19    33072266    rs10411464    T    C    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221784    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    33076615    rs888767    G    A    570.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221784    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:603,45,0
19    33076973    rs10500262    T    A    330.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221784    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:363,27,0
19    33098632    rs2302970    G    C    190.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.26;SNPEFF_AMINO_ACID_CHANGE=P761R;SNPEFF_CODON_CHANGE=cCc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33098541_33098738;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:224,18,0
19    33106387    rs614361    C    G    93.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
19    33106390    rs614370    T    G    78.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
19    33106621    rs405858    C    T    2286.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6809;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_AMINO_ACID_CHANGE=A706;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33106564_33106686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2320,169,0
19    33106893    rs3760937    A    G    94.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
19    33106907    rs3760938    C    T    88.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
19    33106911    rs3760939    A    C    83.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    33109983    rs35946544    C    T    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
19    33110058    rs34727912    A    C    784.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:817,63,0
19    33110149    rs28615461    T    C    1473.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1506,117,0
19    33110204    rs2287669    T    C    1309.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=58.89;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=S657G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33110166_33110285;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1343,105,0
19    33117666    rs6510271    T    C    933.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DB;DP=36;Dels=0.0;FS=4.102;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.155;QD=25.94;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G496;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33117618_33117733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:1,35:36:38.25:967,38,0
19    33117842    rs6510272    C    A    157.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,6:7:15.05:191,15,0
19    33117884    rs6510273    T    C    87.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
19    33118766    rs4805784    C    A    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
19    33119883    rs6510274    A    G    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
19    33130087    rs2302967    A    G    82.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
19    33130496    rs11084666    T    C    602.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:636,54,0
19    33131112    rs3760943    G    A    42.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
19    33131336    rs10416829    T    C    703.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:737,60,0
19    33132742    rs737547    T    C    774.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:808,60,0
19    33133865    rs259230    A    G    166.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
19    33133936    rs3841621    CG    C    696.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=70.5861;IndelType=D;MQ=57.53;MQ0=0;QD=36.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:1,18:19:54.17:739,54,0
19    33134425    rs259229    G    A    5754.53    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DB;DP=169;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.3565;MQ=59.45;MQ0=0;MQRankSum=0.073;QD=34.05;ReadPosRankSum=0.976;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:2,166:169:99:5755,405,0
19    33134635    rs259228    A    G    1391.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1424,105,0
19    33134791    rs259227    C    T    71.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
19    33135458    rs259225    C    T    3080.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.364;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.62;QD=38.03;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:1,80:81:99:3114,196,0
19    33137337    rs74776662    G    T    274.38    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.638;DB;DP=25;Dels=0.0;FS=2.007;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=10.98;ReadPosRankSum=-2.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    0/1:13,12:25:99:304,0,476
19    33137629    rs259220    T    A    369.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:402,30,0
19    33140381    rs259238    A    G    36.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
19    33149768    rs259251    G    A    500.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:534,39,0
19    33167455    rs259290    G    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_AMINO_ACID_CHANGE=A96S;SNPEFF_CODON_CHANGE=Gcg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33166313_33169206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS9BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334176    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    33167879    rs259291    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.3;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306065    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
19    33223005    rs12983865    G    T    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421545    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
19    33234018    rs17699213    A    G    71.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.94;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421545    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,105
19    33239450    rs4805805    C    G    368.84    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.345;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.218;QD=12.72;ReadPosRankSum=-0.528;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421545    GT:AD:DP:GQ:PL    0/1:14,15:29:99:399,0,358
19    33264348    rs12608647    G    T    279.88    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=12.17;ReadPosRankSum=0.217;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421545    GT:AD:DP:GQ:PL    0/1:10,13:23:99:310,0,272
19    33281924    rs11881633    A    G    557.72    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.101;DB;DP=49;Dels=0.0;FS=5.9;HRun=0;HaplotypeScore=2.5612;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=11.38;ReadPosRankSum=0.091;SNPEFF_AMINO_ACID_CHANGE=K413E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33281870_33281974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444215    GT:AD:DP:GQ:PL    0/1:28,21:49:99:588,0,887
19    33282109    rs11878874    C    T    125.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=12.54;ReadPosRankSum=1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421545    GT:AD:DP:GQ:PL    0/1:5,5:10:99:155,0,163
19    33292568    rs12976876    A    T    276.91    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.411;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.847;QD=9.55;ReadPosRankSum=1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444215    GT:AD:DP:GQ:PL    0/1:17,12:29:99:307,0,586
19    33292897    rs35241694    C    G    265.99    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.376;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.03;MQ0=0;MQRankSum=-0.146;QD=11.08;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444215    GT:AD:DP:GQ:PL    0/1:14,10:24:99:296,0,488
19    33293948    rs35110475    G    A    937.30    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=69;Dels=0.0;FS=4.927;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.972;QD=13.58;ReadPosRankSum=0.458;SNPEFF_AMINO_ACID_CHANGE=A818T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33293828_33294048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444215    GT:AD:DP:GQ:PL    0/1:35,34:69:99:967,0,1031
19    33294082    rs10404371    G    A    550.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.47;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.134;QD=16.67;ReadPosRankSum=0.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444215    GT:AD:DP:GQ:PL    0/1:11,22:33:99:580,0,377
19    33304690    rs8107900    C    T    1027.67    PASS    AB=0.213;AC=1;AF=0.50;AN=2;BaseQRankSum=2.908;DB;DP=47;Dels=0.0;FS=3.921;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.951;QD=21.87;ReadPosRankSum=-1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444215    GT:AD:DP:GQ:PL    0/1:10,37:47:99:1058,0,227
19    33304713    rs8111278    T    C    713.43    PASS    AB=0.303;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=33;Dels=0.0;FS=2.706;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.294;QD=21.62;ReadPosRankSum=1.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TDRD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444215    GT:AD:DP:GQ:PL    0/1:10,23:33:99:743,0,321
19    33321717    rs78718924    A    G    73.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9998;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.2;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023064    GT:AD:DP:GQ:PL    0/1:3,3:6:70.24:103,0,70
19    33329100    rs149248211    C    T    858.48    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.679;DB;DP=54;Dels=0.0;FS=9.259;HRun=0;HaplotypeScore=1.6517;MQ=58.18;MQ0=0;MQRankSum=0.472;QD=15.9;ReadPosRankSum=-2.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023064    GT:AD:DP:GQ:PL    0/1:23,31:54:99:888,0,758
19    33334978    rs1559225    G    A    115.12    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.19;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023064    GT:AD:DP:GQ:PL    0/1:2,4:6:66.82:145,0,67
19    33349351    rs61730903    C    T    194.62    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=27;Dels=0.0;FS=1.596;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.343;QD=7.21;ReadPosRankSum=-1.028;SNPEFF_AMINO_ACID_CHANGE=A324;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33349346_33349449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000023064    GT:AD:DP:GQ:PL    0/1:17,10:27:99:225,0,531
19    33349488    rs2287879    T    C    89.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=15;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.177;QD=5.98;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023064    GT:AD:DP:GQ:PL    0/1:9,6:15:99:120,0,329
19    33353345    .    G    A    106.76    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.596;DP=22;Dels=0.0;FS=1.971;HRun=0;HaplotypeScore=1.7886;MQ=60.0;MQ0=0;MQRankSum=0.973;QD=4.85;ReadPosRankSum=-0.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023064    GT:AD:DP:GQ:PL    0/1:15,7:22:99:137,0,436
19    33359240    rs17238872    A    G    34.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023064    GT:AD:DP:GQ:PL    0/1:2,2:4:64.74:65,0,68
19    33390796    rs10418340    G    A    1528.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4922;MQ=59.49;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=N614;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33390763_33390904;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1561,117,0
19    33391006    rs10426667    T    G    63.05    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.873;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=58.84;MQ0=0;MQRankSum=0.786;QD=3.15;ReadPosRankSum=-2.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:15,5:20:93.04:93,0,518
19    33406091    rs3764632    G    A    32.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.06;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:2,2:4:62.22:62,0,63
19    33406442    rs7246178    A    G    1166.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.76;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,34:34:93.28:1200,93,0
19    33406484    rs7260149    G    T    620.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:654,51,0
19    33406549    rs7246326    A    G    100.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=20.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:133,12,0
19    33409048    rs71336979    GC    G    1407.41    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=8.446;DB;DP=101;FS=1.561;HRun=5;HaplotypeScore=659.2754;IndelType=D;MQ=58.08;MQ0=0;MQRankSum=-2.011;QD=13.93;ReadPosRankSum=-0.062;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:48,53:101:99:1446,0,1515
19    33409061    rs2278403    G    C    1741.99    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=4.392;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.7;MQ0=0;MQRankSum=-1.744;QD=15.15;ReadPosRankSum=0.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:55,60:115:99:1772,0,1704
19    33409413    rs2278404    G    T    77.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=6.42;ReadPosRankSum=-1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:8,4:12:99:107,0,290
19    33414420    rs4805825    A    G    1658.92    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=3.602;DB;DP=120;Dels=0.0;FS=3.384;HRun=2;HaplotypeScore=2.7337;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=13.82;ReadPosRankSum=0.471;SNPEFF_AMINO_ACID_CHANGE=V398A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33414345_33414448;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:57,63:120:99:1689,0,1528
19    33417309    rs3813151    C    G    559.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;QD=37.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:592,45,0
19    33417313    rs3813152    T    C    510.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:544,42,0
19    33422134    rs919776    T    A    144.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:177,15,0
19    33422691    rs10416920    A    G    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.57;MQ0=0;QD=14.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
19    33428350    rs2304099    C    T    125.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
19    33428423    rs2304100    G    T    564.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:597,45,0
19    33430816    rs12461782    T    G    456.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:490,36,0
19    33439158    rs12710001    T    C    562.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:596,48,0
19    33444287    rs73579705    C    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.4;MQ0=0;QD=4.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,16:16:9.02:100,9,0
19    33444313    rs74766728    A    C    341.27    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=3.53;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.09;MQ0=0;MQRankSum=-3.123;QD=11.38;ReadPosRankSum=2.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:9,21:30:99:371,0,294
19    33444318    rs74343533    T    C    491.33    PASS    AB=0.256;AC=1;AF=0.50;AN=2;BaseQRankSum=2.396;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.2;MQ0=0;MQRankSum=-2.943;QD=12.6;ReadPosRankSum=0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:10,29:39:99:521,0,323
19    33444331    rs62125053    A    T    922.97    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.899;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=43.85;MQ0=0;MQRankSum=-3.608;QD=18.1;ReadPosRankSum=-0.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:12,39:51:99:953,0,349
19    33444346    rs113629564    TTA    T    2424.16    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=6.139;DB;DP=82;FS=0.0;HRun=0;HaplotypeScore=618.3511;IndelType=D;MQ=48.16;MQ0=0;MQRankSum=-2.757;QD=29.56;ReadPosRankSum=-0.626;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:21,61:82:99:2463,0,921
19    33444453    rs75223967    T    G    5877.17    HaplotypeScoreFilter13    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.977;DB;DP=250;DS;Dels=0.0;FS=0.927;HRun=1;HaplotypeScore=51.2328;MQ=51.93;MQ0=0;MQRankSum=-3.248;QD=23.51;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:52,198:250:99:5877,0,1290
19    33444456    rs2944021    A    G    3725.60    HaplotypeScoreFilter13    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-10.511;DB;DP=249;DS;Dels=0.0;FS=0.764;HRun=0;HaplotypeScore=41.8354;MQ=51.61;MQ0=0;MQRankSum=-1.933;QD=14.9;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:100,148:249:99:3726,0,2926
19    33444479    rs79480383    C    T    295.82    QDFilter2    AB=0.876;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.518;DB;DP=250;DS;Dels=0.0;FS=1.639;HRun=1;HaplotypeScore=3.2376;MQ=49.76;MQ0=0;MQRankSum=-0.154;QD=1.18;ReadPosRankSum=-0.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:218,31:250:99:326,0,7121
19    33444511    rs80283382    T    C    5146.03    PASS    AB=0.328;AC=1;AF=0.50;AN=2;BaseQRankSum=3.966;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1445;MQ=50.55;MQ0=0;MQRankSum=-5.568;QD=20.58;ReadPosRankSum=3.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:82,168:250:99:5146,0,2308
19    33444556    rs73579706    T    C    3228.29    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.644;DB;DP=232;DS;Dels=0.0;FS=4.287;HRun=1;HaplotypeScore=1.9311;MQ=48.16;MQ0=0;MQRankSum=-7.533;QD=13.92;ReadPosRankSum=-2.891;SNPEFF_AMINO_ACID_CHANGE=S153G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33444521_33444707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:75,157:232:99:3259,0,2235
19    33444576    rs74504201    C    T    2373.05    PASS    AB=0.27;AC=1;AF=0.50;AN=2;BaseQRankSum=5.316;DB;DP=241;DS;Dels=0.0;FS=37.424;HRun=0;HaplotypeScore=0.9894;MQ=42.77;MQ0=0;MQRankSum=-9.442;QD=9.85;ReadPosRankSum=-3.885;SNPEFF_AMINO_ACID_CHANGE=R146Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33444521_33444707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:65,176:241:99:2403,0,1710
19    33444588    rs73035551    T    G    1289.31    FSFilter60;HaplotypeScoreFilter13    AB=0.283;AC=1;AF=0.50;AN=2;BaseQRankSum=3.721;DB;DP=227;DS;Dels=0.0;FS=70.599;HRun=0;HaplotypeScore=55.0798;MQ=40.52;MQ0=0;MQRankSum=-10.903;QD=5.68;ReadPosRankSum=-5.169;SNPEFF_AMINO_ACID_CHANGE=D142A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33444521_33444707;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    0/1:64,162:227:99:1319,0,1913
19    33444707    rs10411735    C    T    1801.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.61;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=R102;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33444521_33444707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP89;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305768    GT:AD:DP:GQ:PL    1/1:0,56:57:99:1835,138,0
19    33462938    rs751732    C    T    40.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.11;ReadPosRankSum=1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254262    GT:AD:DP:GQ:PL    0/1:2,2:4:55.75:70,0,56
19    33464048    rs7245980    A    G    512.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254262    GT:AD:DP:GQ:PL    1/1:0,22:22:45.12:546,45,0
19    33467357    rs2304102    G    A    2288.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=36.33;SNPEFF_AMINO_ACID_CHANGE=E139;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33467337_33467946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254262    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2322,175,0
19    33467576    rs7258185    G    A    1045.68    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.525;DB;DP=75;Dels=0.0;FS=3.912;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.083;QD=13.94;ReadPosRankSum=2.195;SNPEFF_AMINO_ACID_CHANGE=T212;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33467337_33467946;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254262    GT:AD:DP:GQ:PL    0/1:41,34:75:99:1076,0,1112
19    33467620    rs7247715    T    C    1307.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1341,114,0
19    33467631    .    A    T    519.20    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DP=40;Dels=0.0;FS=2.258;HRun=0;HaplotypeScore=0.9983;MQ=58.84;MQ0=0;MQRankSum=0.0;QD=12.98;ReadPosRankSum=-1.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    0/1:21,19:40:99:549,0,623
19    33470874    rs8099835    A    G    681.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.2;MQ0=0;QD=32.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254262    GT:AD:DP:GQ:PL    1/1:1,20:21:60.15:715,60,0
19    33471279    rs12971408    C    T    31.98    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.31;MQ0=0;MQRankSum=1.495;QD=4.57;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254262    GT:AD:DP:GQ:PL    0/1:5,2:7:61.97:62,0,121
19    33481388    rs7250684    C    T    552.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.91;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:585,45,0
19    33484657    rs7255448    G    A    76.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:109,9,0
19    33486803    rs4805843    A    G    76.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.11;MQ0=1;QD=19.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:108,9,0
19    33486810    rs4805026    A    G    146.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.38;MQ0=1;QD=24.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:179,15,0
19    33486822    rs8110267    T    C    277.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.56;MQ0=1;QD=27.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:310,27,0
19    33487071    rs12610600    G    C    901.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.04;MQ0=0;QD=26.51;SNPEFF_AMINO_ACID_CHANGE=A157;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33486932_33487126;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544458    GT:AD:DP:GQ:PL    1/1:0,34:34:78.20:934,78,0
19    33487182    rs11084689    A    G    433.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.32;MQ0=0;QD=30.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:466,39,0
19    33490685    rs8109247    T    C    760.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,24:24:66.18:793,66,0
19    33493334    rs12610963    G    A    363.72    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.642;DB;DP=39;Dels=0.0;FS=4.314;HRun=2;HaplotypeScore=0.0;MQ=59.92;MQ0=0;MQRankSum=0.842;QD=9.33;ReadPosRankSum=-1.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    0/1:23,16:39:99:394,0,805
19    33498843    rs2304108    T    C    66.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=6.7;ReadPosRankSum=2.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    0/1:6,4:10:96.98:97,0,187
19    33498978    rs2163807    A    G    252.48    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=25;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.471;QD=10.1;ReadPosRankSum=-1.914;SNPEFF_AMINO_ACID_CHANGE=C234;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33498920_33499086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    0/1:15,10:25:99:282,0,374
19    33502442    rs2288853    T    C    233.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:266,21,0
19    33512632    rs113491636    CA    C    134.78    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=16.488;IndelType=D;MQ=56.62;MQ0=0;MQRankSum=-0.198;QD=19.25;ReadPosRankSum=1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254260    GT:AD:DP:GQ:PL    0/1:2,5:7:68.93:174,0,69
19    33623604    rs1270252    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPATCH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170564    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    33695830    rs11666900    G    A    310.08    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.423;QD=28.19;ReadPosRankSum=0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253188    GT:AD:DP:GQ:PL    0/1:1,10:11:8.66:340,0,9
19    33696708    rs2112800    T    C    209.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_AMINO_ACID_CHANGE=T218;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33695544_33697639;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000431491    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:243,21,0
19    33698291    rs3745974    T    C    200.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=V708A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_33697894_33699765;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253193    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:233,18,0
19    33699664    rs71691428    T    TA    168.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=3;HaplotypeScore=11.3774;IndelType=I;MQ=61.78;MQ0=0;QD=28.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431491    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:210,15,0
19    33700078    rs11671790    C    T    140.71    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=14.07;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253193    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,168
19    33700445    rs2303093    C    T    762.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=31.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253193    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:795,63,0
19    33702245    rs2241378    A    G    249.95    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.137;QD=9.61;ReadPosRankSum=0.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253193    GT:AD:DP:GQ:PL    0/1:15,11:26:99:280,0,483
19    33703103    rs11669156    C    T    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    33703706    rs11673535    A    G    716.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253193    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:749,60,0
19    33878198    rs1061338    A    G    770.60    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.136;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.67;MQ0=0;MQRankSum=-0.71;QD=13.52;ReadPosRankSum=1.508;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEBPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284000    GT:AD:DP:GQ:PL    0/1:28,29:57:99:801,0,925
19    33953743    rs6510386    A    G    152.72    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.223;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-1.059;QD=9.55;ReadPosRankSum=0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244137    GT:AD:DP:GQ:PL    0/1:7,9:16:99:183,0,214
19    33953800    rs78198054    G    A    354.16    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.264;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-1.085;QD=15.4;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244137    GT:AD:DP:GQ:PL    0/1:10,13:23:99:384,0,285
19    33954771    rs113019010    C    T    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244137    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:68,0,34
19    34263229    rs141411970    G    A    240.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.783;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.263;QD=15.02;ReadPosRankSum=0.158;SNPEFF_AMINO_ACID_CHANGE=R179H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_34262862_34264413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHST8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262622    GT:AD:DP:GQ:PL    0/1:8,8:16:99:270,0,231
19    34302673    rs74174693    CT    C    222.90    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=1.809;DB;DP=59;FS=5.189;HRun=15;HaplotypeScore=250.9674;IndelType=D;MQ=56.46;MQ0=0;MQRankSum=-1.927;QD=3.78;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284006    GT:AD:DP:GQ:PL    0/1:31,23:59:99:262,0,384
19    34584137    rs574004    A    G    920.90    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.046;DB;DP=67;Dels=0.0;FS=2.061;HRun=0;HaplotypeScore=0.8667;MQ=59.66;MQ0=0;MQRankSum=-1.424;QD=13.54;ReadPosRankSum=-0.702;SNPEFF_AMINO_ACID_CHANGE=F38L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_34583379_34584249;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS4XP21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000469064    GT:AD:DP:GQ:PL    0/1:35,32:67:99:951,0,1079
19    34687746    rs3119815    C    A    115.21    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.854;QD=6.78;ReadPosRankSum=-0.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433627    GT:AD:DP:GQ:PL    0/1:11,6:17:99:145,0,395
19    34706675    rs77594690    G    A    133.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433627    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
19    34710532    rs2297521    A    G    1566.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;QD=38.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433627    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1599,120,0
19    34710817    rs59123546    A    G    173.76    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=10.86;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433627    GT:AD:DP:GQ:PL    0/1:9,7:16:99:204,0,290
19    34824582    rs74177138    G    GT    98.57    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=66;FS=0.0;HRun=17;HaplotypeScore=430.6976;IndelType=I;MQ=54.12;MQ0=0;MQRankSum=-0.022;QD=1.49;ReadPosRankSum=-1.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0355;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299505    GT:AD:DP:GQ:PL    0/1:39,11:66:99:138,0,140
19    34842488    rs392340    T    C    544.70    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.211;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.292;QD=16.51;ReadPosRankSum=-0.798;SNPEFF_AMINO_ACID_CHANGE=D965;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_34842419_34842497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0355;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299505    GT:AD:DP:GQ:PL    0/1:12,21:33:99:575,0,398
19    34843633    rs187942647    G    A    328.24    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=1.065;DB;DP=44;Dels=0.0;FS=3.46;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.594;QD=7.46;ReadPosRankSum=0.941;SNPEFF_AMINO_ACID_CHANGE=A996T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_34843552_34846471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0355;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000299505    GT:AD:DP:GQ:PL    0/1:29,15:44:99:358,0,925
19    34843761    rs397414    C    A    140.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=55.19;MQ0=0;MQRankSum=-0.573;QD=15.62;ReadPosRankSum=1.422;SNPEFF_AMINO_ACID_CHANGE=P1038;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_34843552_34846471;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0355;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299505    GT:AD:DP:GQ:PL    0/1:3,6:9:90.26:171,0,90
19    34859457    rs2099099    G    A    301.94    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.971;DB;DP=36;Dels=0.0;FS=1.573;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.903;QD=8.39;ReadPosRankSum=-1.603;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356487    GT:AD:DP:GQ:PL    0/1:16,20:36:99:332,0,417
19    34885006    rs8108038    A    G    480.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356487    GT:AD:DP:GQ:PL    1/1:0,15:16:39.13:513,39,0
19    34890322    rs2301263    G    A    821.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.81;MQ=59.07;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356487    GT:AD:DP:GQ:PL    1/1:0,25:25:63.21:854,63,0
19    34904539    rs9653103    C    G    158.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246535    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
19    34904953    rs2081063    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246535    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    34912212    rs62123390    A    G    291.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=24.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246535    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:324,27,0
19    34912224    rs62123391    A    G    622.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDCD2L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246535    GT:AD:DP:GQ:PL    1/1:0,17:17:51.15:656,51,0
19    34922865    rs3217243    T    TGTATAAA    3878.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=0;HaplotypeScore=188.6273;IndelType=I;MQ=38.49;MQ0=0;QD=96.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246548    GT:AD:DP:GQ:PL    1/1:16,21:40:99:3878,102,0
19    34936199    .    T    G    80.44    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.11;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246548    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:110,0,29
19    34942872    rs2161472    A    T    527.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246548    GT:AD:DP:GQ:PL    1/1:0,21:21:45.14:561,45,0
19    34954873    rs10412944    C    G    446.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246548    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:479,36,0
19    34959812    rs7258977    A    G    200.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=33.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542624    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
19    34959979    rs7259160    A    G    827.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=S496;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_34959945_34960795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439527    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:861,66,0
19    34981505    rs4321301    G    A    133.99    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=12.18;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270288    GT:AD:DP:GQ:PL    0/1:5,6:11:99:164,0,179
19    34983682    rs11669233    G    T    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270288    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:70,0,30
19    34984543    rs2277981    T    C    406.15    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.358;DB;DP=39;Dels=0.0;FS=7.977;HRun=1;HaplotypeScore=1.3302;MQ=57.71;MQ0=0;MQRankSum=-0.351;QD=10.41;ReadPosRankSum=-0.941;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270288    GT:AD:DP:GQ:PL    0/1:20,19:39:99:436,0,672
19    34984702    rs2277980    T    C    78.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270288    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
19    34985455    rs16969368    T    C    666.67    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.836;DB;DP=46;Dels=0.0;FS=6.885;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.363;QD=14.49;ReadPosRankSum=-1.418;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270288    GT:AD:DP:GQ:PL    0/1:24,22:46:99:697,0,685
19    34985466    rs11671685    C    T    674.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.242;DB;DP=50;Dels=0.0;FS=8.916;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.591;QD=13.49;ReadPosRankSum=0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270288    GT:AD:DP:GQ:PL    0/1:25,25:50:99:704,0,828
19    34986767    rs35126035    A    C    59.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=9.91;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270288    GT:AD:DP:GQ:PL    0/1:3,3:6:89.46:89,0,102
19    34986776    rs35570240    G    A    69.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.89;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WTIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270288    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:99,0,68
19    35036089    rs7259820    G    A    2818.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=53.85;MQ0=0;MQRankSum=0.799;QD=35.68;ReadPosRankSum=1.643;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF807;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328088    GT:AD:DP:GQ:PL    1/1:1,77:79:99:2851,217,0
19    35051607    rs8100352    T    C    89.19    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=14;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=6.37;ReadPosRankSum=-0.212;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC008747.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408657    GT:AD:DP:GQ:PL    0/1:10,4:14:99:119,0,267
19    35051660    rs8100371    T    C    251.22    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=20;Dels=0.0;FS=13.512;HRun=1;HaplotypeScore=0.5784;MQ=60.54;MQ0=0;MQRankSum=0.912;QD=12.56;ReadPosRankSum=2.507;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC008747.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408657    GT:AD:DP:GQ:PL    0/1:11,9:20:99:281,0,319
19    35051709    rs77585317    CA    C    227.77    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=3.108;DB;DP=23;FS=4.31;HRun=7;HaplotypeScore=80.2471;IndelType=D;MQ=60.47;MQ0=0;MQRankSum=-0.462;QD=9.9;ReadPosRankSum=-1.693;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC008747.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408657    GT:AD:DP:GQ:PL    0/1:12,11:23:99:267,0,383
19    35175208    rs2290652    A    G    4250.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5757;MQ=53.88;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=Y133C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35175157_35177237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF302;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446502    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4250,325,0
19    35175775    rs11543232    C    T    3344.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=36.75;SNPEFF_AMINO_ACID_CHANGE=T278I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35175157_35177296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ZNF302;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423823    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3344,250,0
19    35213438    rs56063498    T    G    1546.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC020910.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408188    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1580,123,0
19    35213480    rs12979448    A    G    1066.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC020910.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408188    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1099,84,0
19    35228084    rs8106730    A    C    177.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF181;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392232    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
19    35231472    rs11426796    T    TA    4281.66    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.954;DB;DP=148;FS=0.0;HRun=9;HaplotypeScore=371.8274;IndelType=I;MQ=59.81;MQ0=0;MQRankSum=1.11;QD=28.93;ReadPosRankSum=0.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF181;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392232    GT:AD:DP:GQ:PL    1/1:17,129:148:99:4282,351,0
19    35233198    rs7248876    T    C    206.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=34.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF181;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425140    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
19    35260442    rs117610843    C    T    702.28    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=10.64;ReadPosRankSum=-0.496;SNPEFF_AMINO_ACID_CHANGE=D12N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35260334_35260460;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF599;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392231    GT:AD:DP:GQ:PL    0/1:39,27:66:99:732,0,1229
19    35270362    rs11673342    G    C    1773.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF599;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392231    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1807,129,0
19    35451885    .    A    G    1533.14    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.716;DP=126;Dels=0.0;FS=0.667;HRun=0;HaplotypeScore=0.6651;MQ=59.45;MQ0=0;MQRankSum=0.377;QD=12.17;ReadPosRankSum=-1.648;SNPEFF_AMINO_ACID_CHANGE=F16S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35451772_35451898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF792;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404801    GT:AD:DP:GQ:PL    0/1:67,59:126:99:1563,0,2113
19    35454574    rs78247295    T    C    73.90    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.198;QD=9.24;ReadPosRankSum=0.198;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF792;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379189    GT:AD:DP:GQ:PL    0/1:3,5:8:64.98:104,0,65
19    35512665    rs2290645    C    T    494.06    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=2.253;DB;DP=38;Dels=0.0;FS=1.547;HRun=0;HaplotypeScore=0.8321;MQ=58.78;MQ0=0;MQRankSum=0.23;QD=13.0;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=S316;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35512595_35512768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504615    GT:AD:DP:GQ:PL    0/1:21,17:38:99:524,0,543
19    35513896    rs4806072    C    T    315.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=35.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317991    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:348,27,0
19    35533550    rs75653437    A    AC    163.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=4;HaplotypeScore=10.412;IndelType=I;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCN1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262631    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
19    35571928    rs7255603    G    A    84.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
19    35577870    rs7250814    G    A    1200.10    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.39;DB;DP=85;Dels=0.0;FS=0.889;HRun=0;HaplotypeScore=4.6066;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=14.12;ReadPosRankSum=1.638;SNPEFF_AMINO_ACID_CHANGE=T71M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35577860_35578004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392227    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1230,0,1188
19    35587635    rs1687996    A    G    185.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.943;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.893;QD=11.59;ReadPosRankSum=-0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392227    GT:AD:DP:GQ:PL    0/1:8,8:16:99:215,0,274
19    35587800    rs1687995    T    C    405.13    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.732;DB;DP=28;Dels=0.0;FS=6.421;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.075;QD=14.47;ReadPosRankSum=0.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392227    GT:AD:DP:GQ:PL    0/1:10,18:28:99:435,0,327
19    35596998    rs8111692    A    C    246.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;QD=35.16;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_35596873_35598141;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313865    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
19    35597215    rs10422803    C    A    435.74    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.216;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1777;MQ=58.92;MQ0=0;MQRankSum=0.191;QD=10.13;ReadPosRankSum=0.775;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392227    GT:AD:DP:GQ:PL    0/1:24,19:43:99:466,0,730
19    35597352    rs2445826    T    C    493.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.68;SNPEFF_AMINO_ACID_CHANGE=A21;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35596873_35598141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313865    GT:AD:DP:GQ:PL    1/1:0,20:20:45.11:527,45,0
19    35597462    rs10424084    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_AMINO_ACID_CHANGE=E58G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35596873_35598141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    35602338    rs11665663    T    C    263.34    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.287;DB;DP=25;Dels=0.0;FS=1.569;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.411;QD=10.53;ReadPosRankSum=-0.027;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313865    GT:AD:DP:GQ:PL    0/1:14,11:25:99:293,0,397
19    35602456    rs113814148    G    T    77.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=15.56;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313865    GT:AD:DP:GQ:PL    1/1:2,3:5:9.03:110,9,0
19    35602498    rs11668731    C    T    36.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC020907.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313865    GT:AD:DP:GQ:PL    0/1:3,2:5:66.21:66,0,92
19    35610245    rs2278994    A    G    1450.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=27.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344013    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1483,117,0
19    35610478    rs2054188    G    A    85.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310123    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    35611824    rs1672971    T    A    143.71    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.53;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310123    GT:AD:DP:GQ:PL    0/1:2,5:7:64.22:174,0,64
19    35611913    rs1688015    A    G    333.40    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.282;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.025;QD=11.91;ReadPosRankSum=-0.025;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310123    GT:AD:DP:GQ:PL    0/1:11,17:28:99:363,0,348
19    35612168    rs1688016    T    A    832.76    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.612;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.2;MQ0=0;MQRankSum=-1.209;QD=13.01;ReadPosRankSum=0.04;SNPEFF_AMINO_ACID_CHANGE=L39H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35612126_35612569;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454903    GT:AD:DP:GQ:PL    0/1:31,33:64:99:863,0,924
19    35613623    rs1688017    G    A    331.90    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=26;Dels=0.0;FS=4.039;HRun=1;HaplotypeScore=0.6651;MQ=59.11;MQ0=0;MQRankSum=1.194;QD=12.77;ReadPosRankSum=-1.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454903    GT:AD:DP:GQ:PL    0/1:11,15:26:99:362,0,351
19    35614336    rs1672974    T    C    680.35    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.765;DB;DP=48;Dels=0.0;FS=1.11;HRun=1;HaplotypeScore=0.6651;MQ=59.03;MQ0=0;MQRankSum=1.487;QD=14.17;ReadPosRankSum=-0.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406242    GT:AD:DP:GQ:PL    0/1:22,26:48:99:710,0,623
19    35615995    rs14358    C    T    153.82    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.97;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344013    GT:AD:DP:GQ:PL    0/1:2,5:7:46.38:184,0,46
19    35616016    rs1048690    G    A    219.88    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.611;QD=16.91;ReadPosRankSum=-2.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344013    GT:AD:DP:GQ:PL    0/1:2,10:13:9.36:250,0,9
19    35616086    rs11084800    C    T    733.27    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.738;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-1.377;QD=22.22;ReadPosRankSum=-1.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344013    GT:AD:DP:GQ:PL    0/1:9,24:33:99:763,0,200
19    35616315    rs12610146    G    A    212.70    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=21.27;ReadPosRankSum=1.733;SNPEFF_AMINO_ACID_CHANGE=L466;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35615417_35616411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310123    GT:AD:DP:GQ:PL    0/1:2,8:10:54.68:243,0,55
19    35616316    rs12610234    C    T    212.01    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=21.2;ReadPosRankSum=1.733;SNPEFF_AMINO_ACID_CHANGE=S491N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35615417_35616411;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392225    GT:AD:DP:GQ:PL    0/1:2,8:10:50.80:242,0,51
19    35616464    rs12976269    G    C    77.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344013    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
19    35617270    rs1319969    T    C    101.47    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=12;Dels=0.0;FS=6.854;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=8.46;ReadPosRankSum=1.866;SNPEFF_AMINO_ACID_CHANGE=Q427R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35617174_35617921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392225    GT:AD:DP:GQ:PL    0/1:7,5:12:99:131,0,160
19    35617639    rs1687998    C    G    81.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.12;SNPEFF_AMINO_ACID_CHANGE=R304P;SNPEFF_CODON_CHANGE=cGa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35617174_35617921;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392225    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
19    35622695    rs1673007    A    G    71.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.92;SNPEFF_AMINO_ACID_CHANGE=H152;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35622693_35622764;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGI4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310123    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
19    35633236    rs1687986    G    A    601.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351325    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:634,48,0
19    35633503    rs1673004    C    G    1193.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351325    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1226,93,0
19    35642297    rs11673428    T    C    672.63    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.151;DB;DP=48;Dels=0.0;FS=3.255;HRun=2;HaplotypeScore=2.4412;MQ=59.52;MQ0=0;MQRankSum=1.302;QD=14.01;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439441    GT:AD:DP:GQ:PL    0/1:21,27:48:99:703,0,522
19    35648365    rs1688005    T    G    141.61    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.657;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=8.85;ReadPosRankSum=0.705;SNPEFF_AMINO_ACID_CHANGE=S35A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35648324_35648404;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342879    GT:AD:DP:GQ:PL    0/1:10,6:16:99:172,0,362
19    35649281    rs1128882    A    G    536.57    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.465;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.01;MQ0=0;MQRankSum=1.828;QD=11.42;ReadPosRankSum=-0.329;SNPEFF_AMINO_ACID_CHANGE=P59;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35649247_35649303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342879    GT:AD:DP:GQ:PL    0/1:24,23:47:99:567,0,713
19    35649324    rs1633915    C    G    1029.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4105;MQ=57.87;MQ0=0;QD=31.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270310    GT:AD:DP:GQ:PL    1/1:0,33:33:84.26:1062,84,0
19    35651531    rs1617607    A    G    1511.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.4096;MQ=58.58;MQ0=0;QD=30.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392218    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1544,123,0
19    35651806    rs2073948    A    T    276.18    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.162;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.4252;MQ=59.07;MQ0=0;MQRankSum=0.739;QD=11.05;ReadPosRankSum=1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392218    GT:AD:DP:GQ:PL    0/1:14,11:25:99:306,0,450
19    35654855    rs17612800    C    T    140.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.71;QD=10.01;ReadPosRankSum=0.581;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392218    GT:AD:DP:GQ:PL    0/1:8,6:14:99:170,0,288
19    35655151    rs1672994    T    C    2313.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.65;MQ0=0;QD=35.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392218    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2346,175,0
19    35655289    rs73588893    G    C    51.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=5.69;ReadPosRankSum=0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392218    GT:AD:DP:GQ:PL    0/1:6,3:9:81.24:81,0,206
19    35657334    rs73044024    A    G    361.23    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.725;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.453;QD=20.07;ReadPosRankSum=0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342879    GT:AD:DP:GQ:PL    0/1:7,11:18:99:391,0,231
19    35657351    rs8106303    A    C    441.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342879    GT:AD:DP:GQ:PL    1/1:0,13:13:39.08:474,39,0
19    35660508    rs12110    G    A    1040.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.7;MQ0=0;QD=35.89;SNPEFF_AMINO_ACID_CHANGE=R105H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35660469_35660784;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FXYD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392217    GT:AD:DP:GQ:PL    1/1:1,28:29:78.26:1074,78,0
19    35719106    rs565791    A    G    604.64    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.671;DB;DP=45;Dels=0.0;FS=5.224;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.455;QD=13.44;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=C160R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35718862_35719632;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM187B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324675    GT:AD:DP:GQ:PL    0/1:20,25:45:99:635,0,543
19    35719257    rs11673347    G    A    1037.95    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.019;DB;DP=71;Dels=0.0;FS=8.388;HRun=3;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.15;QD=14.62;ReadPosRankSum=2.166;SNPEFF_AMINO_ACID_CHANGE=D109;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35718862_35719632;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM187B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324675    GT:AD:DP:GQ:PL    0/1:36,35:71:99:1068,0,1094
19    35719577    rs34873156    G    A    145.84    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.2;ReadPosRankSum=1.652;SNPEFF_AMINO_ACID_CHANGE=P3S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35718862_35719632;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM187B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324675    GT:AD:DP:GQ:PL    0/1:4,5:9:99:176,0,126
19    35741456    rs2073900    T    C    468.33    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.368;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.869;QD=12.66;ReadPosRankSum=-0.533;SNPEFF_AMINO_ACID_CHANGE=V116;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35741218_35741562;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427250    GT:AD:DP:GQ:PL    0/1:17,20:37:99:498,0,519
19    35752691    rs2519962    A    G    108.72    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=13.59;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347609    GT:AD:DP:GQ:PL    0/1:3,5:8:74.86:139,0,75
19    35757250    rs916147    G    A    1064.48    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=68;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.9983;MQ=59.66;MQ0=0;MQRankSum=1.265;QD=15.65;ReadPosRankSum=0.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347609    GT:AD:DP:GQ:PL    0/1:29,39:68:99:1094,0,842
19    35761528    .    T    G    40.67    QDFilter2    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.389;DP=57;Dels=0.0;FS=11.458;HRun=5;HaplotypeScore=2.1877;MQ=58.36;MQ0=0;MQRankSum=-1.474;QD=0.71;ReadPosRankSum=0.794;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347609    GT:AD:DP:GQ:PL    0/1:33,23:57:70.67:71,0,827
19    35769518    rs34832786    T    C    658.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.935;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8455;MQ=60.0;MQ0=0;MQRankSum=-0.203;QD=16.45;ReadPosRankSum=0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222305    GT:AD:DP:GQ:PL    0/1:20,20:40:99:688,0,625
19    35769561    rs28365136    T    G    824.40    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.204;DB;DP=68;Dels=0.0;FS=2.679;HRun=0;HaplotypeScore=1.9198;MQ=59.66;MQ0=0;MQRankSum=0.29;QD=12.12;ReadPosRankSum=0.753;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222305    GT:AD:DP:GQ:PL    0/1:38,30:68:99:854,0,1117
19    35770064    rs2280747    C    T    136.87    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=10.53;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222305    GT:AD:DP:GQ:PL    0/1:8,5:13:99:167,0,260
19    35770174    rs12742    A    G    69.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.922;QD=7.68;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379134    GT:AD:DP:GQ:PL    0/1:2,6:9:65.50:99,0,66
19    35790503    rs3746248    G    A    351.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.07;SNPEFF_AMINO_ACID_CHANGE=E129;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35790457_35790753;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537831    GT:AD:DP:GQ:PL    1/1:0,13:13:30.07:385,30,0
19    35800662    rs10411704    G    T    736.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262624    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:770,57,0
19    35800720    rs10411883    G    C    1548.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.2955;MQ=59.59;MQ0=0;QD=27.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262624    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1582,129,0
19    35829513    rs7251526    T    C    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085219    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
19    35831649    rs2239512    C    T    145.15    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=18.14;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085219    GT:AD:DP:GQ:PL    0/1:3,5:8:94.64:175,0,95
19    35835582    rs3746250    G    A    303.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.218;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.525;QD=13.8;ReadPosRankSum=-1.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085219    GT:AD:DP:GQ:PL    0/1:11,11:22:99:334,0,328
19    35835940    rs45453699    C    T    1154.45    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.005;DB;DP=96;Dels=0.0;FS=1.645;HRun=0;HaplotypeScore=2.4131;MQ=59.28;MQ0=0;MQRankSum=2.716;QD=12.03;ReadPosRankSum=-0.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085219    GT:AD:DP:GQ:PL    0/1:53,43:96:99:1184,0,1602
19    35836859    rs4805120    A    G    65.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085219    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:97,9,0
19    35842372    .    G    A    55.28    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085219    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
19    35843086    rs2301151    G    A    643.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=R211H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35842445_35843367;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FFAR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246553    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:677,54,0
19    35849926    rs79251979    G    A    1124.31    MQFilter40    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=80;Dels=0.0;FS=4.468;HRun=0;HaplotypeScore=0.0;MQ=39.32;MQ0=1;MQRankSum=-0.056;QD=14.05;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=R45H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35849782_35851387;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FFAR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327809    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1154,0,1025
19    35850672    rs142125121    T    C    54.76    MQFilter40;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.114;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.84;MQ0=12;MQRankSum=0.317;QD=0.91;ReadPosRankSum=-0.8;SNPEFF_AMINO_ACID_CHANGE=L294;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35849782_35851387;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FFAR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327809    GT:AD:DP:GQ:PL    0/1:50,10:60:84.75:85,0,518
19    35940453    rs34051923    G    C    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.86;ReadPosRankSum=-1.231;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FFAR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246549    GT:AD:DP:GQ:PL    0/1:3,2:5:64.28:64,0,98
19    35978299    rs7976    C    T    1317.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.544;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2611;MQ=59.55;MQ0=0;MQRankSum=1.123;QD=12.92;ReadPosRankSum=0.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTDAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479340    GT:AD:DP:GQ:PL    0/1:51,51:102:99:1347,0,1374
19    35978458    rs17638216    G    A    486.56    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.844;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.392;QD=13.15;ReadPosRankSum=-0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTDAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338897    GT:AD:DP:GQ:PL    0/1:20,17:37:99:517,0,675
19    35978567    rs62111717    T    C    817.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.893;DB;DP=58;Dels=0.0;FS=6.05;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.047;QD=14.1;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTDAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338897    GT:AD:DP:GQ:PL    0/1:29,29:58:99:848,0,889
19    35978577    rs2293690    C    T    645.11    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.697;DB;DP=64;Dels=0.0;FS=5.621;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.71;QD=10.08;ReadPosRankSum=0.738;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTDAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338897    GT:AD:DP:GQ:PL    0/1:36,28:64:99:675,0,1150
19    35979696    rs10410228    C    T    654.21    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.75;DB;DP=45;Dels=0.0;FS=15.443;HRun=0;HaplotypeScore=1.6208;MQ=59.59;MQ0=0;MQRankSum=-0.541;QD=14.22;ReadPosRankSum=-1.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTDAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338897    GT:AD:DP:GQ:PL    0/1:22,23:45:99:684,0,570
19    35979862    rs1006767    A    G    280.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTDAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338897    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:314,24,0
19    35989972    rs2293693    T    A    293.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392206    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
19    35991043    rs11666154    G    T    327.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392206    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:360,27,0
19    35991373    rs2293695    C    T    410.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392206    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:443,33,0
19    35991442    rs909072    T    G    448.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=D123A;SNPEFF_CODON_CHANGE=gAc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35991435_35991482;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436012    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:481,39,0
19    35992691    rs8100640    A    G    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392206    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
19    35993661    rs11084816    C    T    108.88    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.322;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=4.73;ReadPosRankSum=0.553;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392206    GT:AD:DP:GQ:PL    0/1:17,6:23:99:139,0,574
19    35997363    rs6510492    C    T    239.94    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.423;QD=21.81;ReadPosRankSum=-0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470857    GT:AD:DP:GQ:PL    0/1:1,10:11:17.15:270,0,17
19    35998362    rs4254439    T    G    422.50    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.963;DB;DP=35;Dels=0.0;FS=3.176;HRun=0;HaplotypeScore=1.5449;MQ=60.0;MQ0=0;MQRankSum=1.481;QD=12.07;ReadPosRankSum=1.24;SNPEFF_AMINO_ACID_CHANGE=R315;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_35998360_35998413;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419602    GT:AD:DP:GQ:PL    0/1:18,17:35:99:452,0,538
19    35999251    rs11084818    C    G    329.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=16.49;ReadPosRankSum=1.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470857    GT:AD:DP:GQ:PL    0/1:10,10:20:99:360,0,349
19    35999491    rs7245699    A    C    602.62    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=42;Dels=0.0;FS=3.603;HRun=0;HaplotypeScore=3.4481;MQ=58.89;MQ0=0;MQRankSum=1.32;QD=14.35;ReadPosRankSum=0.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470857    GT:AD:DP:GQ:PL    0/1:22,19:42:99:633,0,734
19    36002710    rs4806162    C    A    86.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=7.19;ReadPosRankSum=0.6;SNPEFF_AMINO_ACID_CHANGE=T230;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36002665_36002715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000339686    GT:AD:DP:GQ:PL    0/1:8,4:12:99:116,0,237
19    36003430    rs7254784    C    T    219.64    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.617;DB;DP=27;Dels=0.0;FS=3.965;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.186;QD=8.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339686    GT:AD:DP:GQ:PL    0/1:18,9:27:99:250,0,543
19    36003721    rs7254211    G    A    221.08    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=17.01;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339686    GT:AD:DP:GQ:PL    0/1:5,8:13:99:251,0,159
19    36004106    rs4806163    A    G    1602.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=36.41;SNPEFF_AMINO_ACID_CHANGE=V91A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36003952_36004554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339686    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1635,120,0
19    36004171    rs12460932    C    A    685.52    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=56;Dels=0.0;FS=2.415;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=0.216;QD=12.24;ReadPosRankSum=0.216;SNPEFF_AMINO_ACID_CHANGE=E69D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36003952_36004554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=DMKN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339686    GT:AD:DP:GQ:PL    0/1:29,27:56:99:716,0,845
19    36015521    rs58183088    C    T    62.69    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.383;QD=6.27;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452271    GT:AD:DP:GQ:PL    0/1:6,4:10:92.68:93,0,205
19    36015652    rs17705633    C    T    278.62    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=2.788;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.123;QD=10.32;ReadPosRankSum=0.864;SNPEFF_AMINO_ACID_CHANGE=S227;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36015613_36015657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBSN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000518157    GT:AD:DP:GQ:PL    0/1:16,11:27:99:309,0,464
19    36015727    rs73030916    G    T    351.88    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.123;QD=15.99;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452271    GT:AD:DP:GQ:PL    0/1:9,13:22:99:382,0,262
19    36015755    rs113939892    G    A    223.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.222;DB;DP=18;Dels=0.0;FS=1.778;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.044;QD=12.4;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452271    GT:AD:DP:GQ:PL    0/1:10,8:18:99:253,0,267
19    36015865    rs2285511    A    C    452.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=58.2;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452271    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:486,39,0
19    36015873    rs2285512    G    A    68.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=9;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.5784;MQ=57.39;MQ0=0;MQRankSum=0.322;QD=7.6;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBSN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452271    GT:AD:DP:GQ:PL    0/1:5,3:9:98.39:98,0,161
19    36017928    rs10775583    G    C    110.43    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=18.4;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=A419G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36017546_36019212;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBSN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000452271    GT:AD:DP:GQ:PL    0/1:1,5:6:27.18:140,0,27
19    36033460    rs2239945    C    T    480.73    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=40;Dels=0.0;FS=1.258;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.684;QD=12.02;ReadPosRankSum=-0.027;SNPEFF_AMINO_ACID_CHANGE=V203;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36033392_36033510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAPDHS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222286    GT:AD:DP:GQ:PL    0/1:23,17:40:99:511,0,679
19    36038221    rs759996    T    C    421.69    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.37;DB;DP=35;Dels=0.0;FS=1.348;HRun=2;HaplotypeScore=3.7178;MQ=60.0;MQ0=0;MQRankSum=-0.512;QD=12.05;ReadPosRankSum=-1.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262623    GT:AD:DP:GQ:PL    0/1:17,18:35:99:452,0,559
19    36038390    rs7599    A    G    244.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262623    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
19    36044524    rs2251124    G    A    298.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262623    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:332,24,0
19    36045772    rs2733739    A    G    428.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262623    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:461,36,0
19    36050969    rs2733743    A    G    437.81    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=6.539;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=23.04;ReadPosRankSum=-0.482;SNPEFF_AMINO_ACID_CHANGE=V265A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36050707_36050975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262623    GT:AD:DP:GQ:PL    0/1:6,13:19:99:468,0,185
19    36104890    rs45510191    C    T    946.94    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.59;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.134;QD=15.52;ReadPosRankSum=0.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203166    GT:AD:DP:GQ:PL    0/1:28,33:61:99:977,0,903
19    36113459    rs2285413    G    A    818.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=57.28;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203166    GT:AD:DP:GQ:PL    1/1:0,26:26:63.19:851,63,0
19    36113658    rs2285414    A    G    827.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203166    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:861,66,0
19    36122441    rs2285415    G    A    236.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=33.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262633    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:270,21,0
19    36124176    rs8106576    A    G    1143.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262633    GT:AD:DP:GQ:PL    1/1:0,36:36:90.25:1177,90,0
19    36128295    rs2285416    G    A    571.47    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.42;MQ0=0;MQRankSum=-0.556;QD=14.29;ReadPosRankSum=-0.253;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262633    GT:AD:DP:GQ:PL    0/1:17,22:40:99:601,0,317
19    36133644    rs144701792    G    A    69.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.98;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412475    GT:AD:DP:GQ:PL    0/1:2,3:5:64.27:100,0,64
19    36134208    rs2285419    G    A    309.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.452;DB;DP=18;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=17.19;ReadPosRankSum=-1.171;SNPEFF_AMINO_ACID_CHANGE=D118N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36134176_36134655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379026    GT:AD:DP:GQ:PL    0/1:6,12:18:99:339,0,125
19    36135279    rs3835005    C    CT    582.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=64.5827;IndelType=I;MQ=59.92;MQ0=0;QD=34.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412475    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:624,39,0
19    36135793    rs6510501    A    T    205.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETV2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379021    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:239,18,0
19    36142296    rs61220012    G    A    780.95    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.513;QD=17.75;ReadPosRankSum=0.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX6B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246554    GT:AD:DP:GQ:PL    0/1:18,26:44:99:811,0,544
19    36159368    rs2267586    T    G    422.96    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.274;DB;DP=42;Dels=0.0;FS=2.807;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.064;QD=10.07;ReadPosRankSum=-0.355;SNPEFF_AMINO_ACID_CHANGE=S33A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36159356_36159556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK1A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222275    GT:AD:DP:GQ:PL    0/1:23,19:42:99:453,0,703
19    36164108    rs75289222    G    T    759.93    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=2.378;DB;DP=57;Dels=0.0;FS=1.218;HRun=0;HaplotypeScore=0.734;MQ=59.6;MQ0=0;MQRankSum=-0.262;QD=13.33;ReadPosRankSum=0.279;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222275    GT:AD:DP:GQ:PL    0/1:28,29:57:99:790,0,704
19    36206050    rs2227278    A    C    513.94    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.554;DB;DP=44;Dels=0.0;FS=4.185;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=11.68;ReadPosRankSum=-1.096;SNPEFF_AMINO_ACID_CHANGE=R174S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36205425_36206409;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB32;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262630    GT:AD:DP:GQ:PL    0/1:24,20:44:99:544,0,692
19    36207336    rs2234375    G    C    1033.36    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=5.358;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=-0.63;QD=15.42;ReadPosRankSum=-0.938;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262630    GT:AD:DP:GQ:PL    0/1:31,36:67:99:1063,0,799
19    36213060    rs113293315    C    T    77.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.41;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD000671.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341701    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:107,0,67
19    36214632    rs75450951    A    AG    1802    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=1;HaplotypeScore=121.4923;IndelType=I;MQ=60.25;MQ0=0;QD=40.95;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_36214633_36214908;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD000671.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000222270    GT:AD:DP:GQ:PL    1/1:2,42:44:99:1844,123,0
19    36221051    rs2242520    G    A    616.43    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.595;DB;DP=57;Dels=0.0;FS=3.901;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.583;QD=10.81;ReadPosRankSum=-0.431;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD000671.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222270    GT:AD:DP:GQ:PL    0/1:32,25:57:99:646,0,900
19    36222857    rs16970649    C    T    684.05    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=59;Dels=0.0;FS=3.749;HRun=1;HaplotypeScore=0.9867;MQ=59.61;MQ0=0;MQRankSum=-0.297;QD=11.59;ReadPosRankSum=1.384;SNPEFF_AMINO_ACID_CHANGE=P1829L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36222809_36223036;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD000671.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222270    GT:AD:DP:GQ:PL    0/1:34,25:59:99:714,0,1017
19    36223111    rs61351824    C    A    314.98    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.836;QD=15.75;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD000671.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222270    GT:AD:DP:GQ:PL    0/1:9,11:20:99:345,0,266
19    36223747    rs73590585    A    G    92.73    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=2.808;HRun=4;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=10.3;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=A2099;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36223116_36224409;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD000671.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222270    GT:AD:DP:GQ:PL    0/1:5,4:9:99:123,0,172
19    36224705    rs231591    A    G    581.16    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7465;MQ=60.0;MQ0=0;MQRankSum=-0.505;QD=12.91;ReadPosRankSum=2.218;SNPEFF_AMINO_ACID_CHANGE=D2364G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36224664_36224773;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD000671.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222270    GT:AD:DP:GQ:PL    0/1:23,22:45:99:611,0,543
19    36228667    rs73590598    C    T    156.83    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=19;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=2.6527;MQ=56.25;MQ0=0;MQRankSum=-1.694;QD=8.25;ReadPosRankSum=1.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246532    GT:AD:DP:GQ:PL    0/1:11,8:19:99:187,0,295
19    36228954    rs2242522    G    T    1138.02    PASS    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=1.282;DB;DP=48;Dels=0.0;FS=1.436;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.14;QD=23.71;ReadPosRankSum=1.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFLR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246532    GT:AD:DP:GQ:PL    0/1:10,38:48:99:1168,0,196
19    36230767    rs34562867    A    G    827.80    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.569;DB;DP=59;Dels=0.0;FS=2.326;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=14.03;ReadPosRankSum=-1.827;SNPEFF_AMINO_ACID_CHANGE=W189R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36230611_36230989;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFLR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246532    GT:AD:DP:GQ:PL    0/1:30,29:59:99:858,0,853
19    36236120    rs231597    A    G    2193.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=33.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292879    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2226,175,0
19    36237227    rs3817622    T    A    83.52    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.065;QD=5.57;ReadPosRankSum=0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSENEN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222266    GT:AD:DP:GQ:PL    0/1:11,4:15:99:114,0,373
19    36237245    rs2293688    C    G    367.20    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.704;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.39;MQ0=0;MQRankSum=0.322;QD=12.66;ReadPosRankSum=-0.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSENEN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222266    GT:AD:DP:GQ:PL    0/1:16,13:29:99:397,0,536
19    36243089    rs170758    T    C    938.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_AMINO_ACID_CHANGE=V16A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36243077_36243152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN37;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301159    GT:AD:DP:GQ:PL    1/1:0,29:29:69.23:971,69,0
19    36243190    rs231244    T    C    396.02    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.443;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=12.38;ReadPosRankSum=-0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004982    GT:AD:DP:GQ:PL    0/1:16,15:32:99:426,0,526
19    36243813    rs231243    G    A    480.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=28.27;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIN37;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000301159    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:514,39,0
19    36244743    rs231242    C    G    56.01    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=8.0;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000004982    GT:AD:DP:GQ:PL    0/1:4,3:7:86:86,0,140
19    36253317    rs807479    C    T    424.34    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.946;DB;DP=29;Dels=0.0;FS=7.732;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.196;QD=14.63;ReadPosRankSum=0.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444637    GT:AD:DP:GQ:PL    0/1:14,15:29:99:454,0,494
19    36258721    rs73592448    C    T    404.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.917;DB;DP=34;Dels=0.0;FS=8.557;HRun=0;HaplotypeScore=0.0;MQ=56.52;MQ0=0;MQRankSum=-0.257;QD=11.9;ReadPosRankSum=0.652;SNPEFF_AMINO_ACID_CHANGE=A325V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36258705_36258938;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396908    GT:AD:DP:GQ:PL    0/1:17,17:34:99:435,0,416
19    36258842    rs231217    G    C    121.57    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.268;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=57.02;MQ0=0;MQRankSum=-0.866;QD=6.08;ReadPosRankSum=-0.784;SNPEFF_AMINO_ACID_CHANGE=K365N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36258705_36258938;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf55;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396908    GT:AD:DP:GQ:PL    0/1:14,6:20:99:152,0,395
19    36258937    rs66706567    AG    A    436.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=46.061;IndelType=D;MQ=59.91;MQ0=0;QD=31.2;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_36258705_36258938;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf55;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000396908    GT:AD:DP:GQ:PL    1/1:1,13:14:39.12:479,39,0
19    36259480    rs113059159    C    CT    278.76    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.97;DB;DP=63;FS=4.091;HRun=13;HaplotypeScore=320.842;IndelType=I;MQ=54.88;MQ0=0;MQRankSum=-0.894;QD=4.42;ReadPosRankSum=-1.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301165    GT:AD:DP:GQ:PL    0/1:44,17:63:99:318,0,201
19    36259494    rs57246677    C    A    68.37    QDFilter2    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.749;DB;DP=43;Dels=0.0;FS=1.979;HRun=1;HaplotypeScore=0.9997;MQ=54.5;MQ0=0;MQRankSum=-0.906;QD=1.59;ReadPosRankSum=-1.327;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf55;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301165    GT:AD:DP:GQ:PL    0/1:18,23:43:98.37:98,0,519
19    36268771    rs231228    C    T    2680.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8211;MQ=59.74;MQ0=0;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=A50;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36268726_36268810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000007510    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2713,205,0
19    36268923    rs807491    C    T    471.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007510    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:505,39,0
19    36269915    rs231230    T    C    179.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007510    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:212,15,0
19    36273230    rs231223    C    G    1230.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221905    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1263,99,0
19    36273308    rs35297478    G    A    1791.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_AMINO_ACID_CHANGE=L237;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36273275_36273419;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378944    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1825,138,0
19    36276403    rs120959    T    G    979.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=30.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000007510    GT:AD:DP:GQ:PL    1/1:0,32:32:78.24:1012,78,0
19    36278470    rs231235    C    G    675.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_AMINO_ACID_CHANGE=A1001;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36278070_36279724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000007510    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:709,57,0
19    36302921    rs12462360    T    C    449.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DB;DP=38;Dels=0.0;FS=9.866;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.319;QD=11.82;ReadPosRankSum=-0.258;SNPEFF_AMINO_ACID_CHANGE=P256;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36302864_36302950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRODH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301175    GT:AD:DP:GQ:PL    0/1:19,19:38:99:479,0,610
19    36321525    rs460560    C    T    75.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353632    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
19    36321910    rs731934    G    A    551.03    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.481;DB;DP=42;Dels=0.0;FS=4.506;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=13.12;ReadPosRankSum=1.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353632    GT:AD:DP:GQ:PL    0/1:22,20:42:99:581,0,695
19    36322270    rs2071327    C    T    1525.95    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.457;DB;DP=121;Dels=0.0;FS=7.715;HRun=0;HaplotypeScore=5.0797;MQ=59.66;MQ0=0;MQRankSum=-0.941;QD=12.61;ReadPosRankSum=-1.981;SNPEFF_AMINO_ACID_CHANGE=S1065;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36322198_36322273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353632    GT:AD:DP:GQ:PL    0/1:63,58:121:99:1556,0,2003
19    36322509    rs466452    G    A    576.98    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.11;DB;DP=47;Dels=0.0;FS=1.717;HRun=0;HaplotypeScore=0.8667;MQ=59.11;MQ0=0;MQRankSum=1.257;QD=12.28;ReadPosRankSum=-1.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353632    GT:AD:DP:GQ:PL    0/1:26,21:47:99:607,0,792
19    36322601    rs4806213    T    C    99.12    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DB;DP=12;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=8.26;ReadPosRankSum=-0.929;SNPEFF_AMINO_ACID_CHANGE=N1077S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36322545_36322664;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378910    GT:AD:DP:GQ:PL    0/1:8,4:12:99:129,0,286
19    36334594    rs436842    G    A    154.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=22.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353632    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:187,15,0
19    36339247    rs33950747    C    T    436.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.481;DB;DP=34;Dels=0.0;FS=3.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.448;QD=12.84;ReadPosRankSum=0.069;SNPEFF_AMINO_ACID_CHANGE=R408Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36339155_36339299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPHS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000353632    GT:AD:DP:GQ:PL    0/1:17,17:34:99:467,0,492
19    36351768    rs60849332    G    A    31.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.32;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262625    GT:AD:DP:GQ:PL    0/1:4,2:6:61.90:62,0,140
19    36351935    rs35854130    G    T    64.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=9.28;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A301;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36351811_36351938;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347900    GT:AD:DP:GQ:PL    0/1:4,3:7:94.95:95,0,143
19    36355595    rs382789    A    G    994.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.42;SNPEFF_AMINO_ACID_CHANGE=K102E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36355550_36355615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIRREL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270294    GT:AD:DP:GQ:PL    1/1:0,35:35:81.26:1028,81,0
19    36393563    .    G    T    2411.57    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.529;DP=152;DS;Dels=0.0;FS=4.255;HRun=1;HaplotypeScore=3.2704;MQ=59.24;MQ0=0;MQRankSum=0.881;QD=15.87;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TYROBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262629    GT:AD:DP:GQ:PL    0/1:73,79:152:99:2442,0,2416
19    36486445    rs7249826    G    C    87.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.26;SNPEFF_AMINO_ACID_CHANGE=C90S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36486090_36487220;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDHAF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378887    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
19    36497358    rs2285422    C    G    644.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.91;SNPEFF_AMINO_ACID_CHANGE=Q165H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36497325_36497573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C19orf46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340477    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:677,51,0
19    36517655    rs10418015    C    T    255.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360535    GT:AD:DP:GQ:PL    1/1:1,9:10:21.07:288,21,0
19    36526281    rs66987345    TATA    T    572.17    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.154;DB;DP=18;FS=2.823;HRun=0;HaplotypeScore=77.7068;IndelType=D;MQ=59.32;MQ0=0;MQRankSum=-0.493;QD=31.79;ReadPosRankSum=0.197;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524106    GT:AD:DP:GQ:PL    0/1:5,13:18:99:611,0,292
19    36549684    rs61742664    G    A    298.57    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=33;Dels=0.0;FS=3.452;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.629;QD=9.05;ReadPosRankSum=-0.345;SNPEFF_AMINO_ACID_CHANGE=V54;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36549682_36549773;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427823    GT:AD:DP:GQ:PL    0/1:20,12:33:99:329,0,530
19    36558113    rs12608517    T    C    438.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:472,36,0
19    36558195    rs78138007    C    T    634.99    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=44;Dels=0.0;FS=1.238;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=1.45;QD=14.43;ReadPosRankSum=0.295;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:20,24:44:99:665,0,649
19    36558712    rs10423651    C    T    224.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=22;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=10.21;ReadPosRankSum=-0.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:11,11:22:99:255,0,331
19    36562292    rs4806260    G    A    320.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.31;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:353,27,0
19    36564446    rs76130844    C    T    692.15    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.962;DB;DP=40;Dels=0.0;FS=5.014;HRun=0;HaplotypeScore=1.9472;MQ=57.66;MQ0=0;MQRankSum=-0.727;QD=17.3;ReadPosRankSum=0.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427823    GT:AD:DP:GQ:PL    0/1:12,27:40:99:722,0,228
19    36572279    .    G    GTCATTTTC    3734.43    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.472;DP=81;FS=6.13;HRun=0;HaplotypeScore=520.6452;IndelType=I;MQ=50.5;MQ0=0;MQRankSum=-6.208;QD=46.1;ReadPosRankSum=-0.948;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:59,19:81:99:3734,0,3554
19    36572564    rs7246292    T    C    350.17    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.543;DB;DP=18;Dels=0.0;FS=1.958;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.087;QD=19.45;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:7,11:18:99:380,0,232
19    36574284    rs1016992    C    A    34.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.7;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388999    GT:AD:DP:GQ:PL    0/1:4,2:6:64.18:64,0,148
19    36574361    rs8105294    A    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388999    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    36577742    rs77938609    G    A    67.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.49;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388999    GT:AD:DP:GQ:PL    0/1:2,3:5:56.34:97,0,56
19    36581263    rs3746271    G    C    337.40    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.123;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.398;QD=16.07;ReadPosRankSum=-0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:8,13:21:99:367,0,259
19    36581987    rs4806271    T    C    144.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
19    36582270    rs2301736    G    A    563.81    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.993;DB;DP=32;Dels=0.0;FS=1.497;HRun=2;HaplotypeScore=1.5778;MQ=59.28;MQ0=0;MQRankSum=2.511;QD=17.62;ReadPosRankSum=-1.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:12,20:32:99:594,0,332
19    36584602    rs10853945    C    T    79.85    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.731;QD=15.97;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:1,4:5:27.97:110,0,28
19    36590329    rs2285745    T    C    469.38    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=41;Dels=0.0;FS=5.905;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.259;QD=11.45;ReadPosRankSum=-1.122;SNPEFF_AMINO_ACID_CHANGE=L850S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36590301_36590519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:23,18:41:99:499,0,661
19    36593915    rs61741470    T    G    538.88    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.562;DB;DP=30;Dels=0.0;FS=3.319;HRun=2;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.955;QD=17.96;ReadPosRankSum=-0.652;SNPEFF_AMINO_ACID_CHANGE=M1129R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36593850_36593976;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:11,19:30:99:569,0,339
19    36594153    rs45468494    G    A    178.27    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=10.49;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:11,6:17:99:208,0,258
19    36594369    rs45470992    C    T    628.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=52;Dels=0.0;FS=1.191;HRun=0;HaplotypeScore=2.575;MQ=59.11;MQ0=0;MQRankSum=0.282;QD=12.08;ReadPosRankSum=-0.184;SNPEFF_AMINO_ACID_CHANGE=S1208;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36594245_36594883;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:26,26:52:99:658,0,691
19    36594659    rs2074435    A    T    1326.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_AMINO_ACID_CHANGE=Q1305L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36594245_36594883;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1360,105,0
19    36595436    rs1008328    A    C    591.64    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.375;DB;DP=46;Dels=0.0;FS=1.145;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.781;QD=12.86;ReadPosRankSum=-1.308;SNPEFF_AMINO_ACID_CHANGE=L1385F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36595420_36595577;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270301    GT:AD:DP:GQ:PL    0/1:24,22:46:99:622,0,668
19    36603703    rs2072605    T    A    36.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=6.14;ReadPosRankSum=-1.38;SNPEFF_AMINO_ACID_CHANGE=P128;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36603662_36603866;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD001527.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262637    GT:AD:DP:GQ:PL    0/1:4,2:6:66.83:67,0,111
19    36605647    rs2227260    T    C    3719.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8596;MQ=59.61;MQ0=0;QD=31.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AD001527.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262637    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3719,286,0
19    36605794    rs2231568    C    T    1728.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.01;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_36605700_36606206;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR2I;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221859    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1762,135,0
19    36640769    rs14100    T    C    1123.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.92;MQ0=0;QD=26.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COX7A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292907    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1157,99,0
19    36642310    rs2008683    T    C    699.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=58.13;MQ0=0;QD=27.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPNS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246533    GT:AD:DP:GQ:PL    1/1:0,25:25:57.16:732,57,0
19    36674305    rs4805162    A    G    758.05    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.982;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.25;MQ0=0;MQRankSum=-0.167;QD=12.23;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=I188T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36673188_36674635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF565;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304116    GT:AD:DP:GQ:PL    0/1:34,28:62:99:788,0,1118
19    36684969    rs34912665    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF565;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304116    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    36685310    rs2287897    C    T    151.81    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=21.69;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF565;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304116    GT:AD:DP:GQ:PL    0/1:1,6:7:18.92:182,0,19
19    36685316    rs2287898    T    C    109.19    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=21.84;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF565;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304116    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:139,0,26
19    36686205    rs56206115    G    A    133.50    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=11.13;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF565;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304116    GT:AD:DP:GQ:PL    0/1:7,5:12:99:163,0,231
19    36728290    rs4806293    A    G    92.93    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=7.74;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF565;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355114    GT:AD:DP:GQ:PL    0/1:8,4:12:99:123,0,279
19    36858944    rs11084857    A    G    36.35    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=6.06;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270001    GT:AD:DP:GQ:PL    0/1:4,2:6:66.35:66,0,144
19    36885067    rs17206365    A    T    537.03    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.719;DB;DP=44;Dels=0.0;FS=1.49;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.695;QD=12.21;ReadPosRankSum=0.2;SNPEFF_AMINO_ACID_CHANGE=L59M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36883643_36885105;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZFP82;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392171    GT:AD:DP:GQ:PL    0/1:24,20:44:99:567,0,779
19    36940698    rs10410711    A    G    1733.34    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.776;DB;DP=121;Dels=0.0;FS=1.492;HRun=0;HaplotypeScore=2.8322;MQ=59.81;MQ0=0;MQRankSum=0.414;QD=14.33;ReadPosRankSum=0.45;SNPEFF_AMINO_ACID_CHANGE=H146;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36938584_36940903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424129    GT:AD:DP:GQ:PL    0/1:55,66:121:99:1763,0,1629
19    36940760    rs2967532    G    T    5089.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_AMINO_ACID_CHANGE=R126;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_36938584_36940903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424129    GT:AD:DP:GQ:PL    1/1:0,147:147:99:5090,367,0
19    36941144    rs2967533    T    C    42.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=21.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392170    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
19    36963637    rs2967539    C    T    375.88    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.952;QD=15.04;ReadPosRankSum=0.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460937    GT:AD:DP:GQ:PL    0/1:12,13:25:99:406,0,415
19    36963743    rs73049826    C    T    2854.29    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.812;DB;DP=156;Dels=0.0;FS=11.856;HRun=0;HaplotypeScore=2.3479;MQ=59.85;MQ0=0;MQRankSum=0.428;QD=18.3;ReadPosRankSum=1.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460937    GT:AD:DP:GQ:PL    0/1:65,90:156:99:2884,0,2025
19    36964376    rs2967540    C    T    674.71    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.835;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=13.49;ReadPosRankSum=-1.596;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472909    GT:AD:DP:GQ:PL    0/1:27,23:50:99:705,0,729
19    36967352    .    T    TTTTC    1124.08    PASS    AC=2;AF=1.00;AN=2;DP=16;FS=0.0;HRun=0;HaplotypeScore=46.8557;IndelType=I;MQ=53.4;MQ0=0;QD=70.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392170    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:1166,45,0
19    36980346    rs112682067    C    T    377.06    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DB;DP=31;Dels=0.0;FS=1.792;HRun=0;HaplotypeScore=0.9578;MQ=59.25;MQ0=0;MQRankSum=-0.199;QD=12.16;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392170    GT:AD:DP:GQ:PL    0/1:13,18:31:99:407,0,367
19    36980370    rs2912426    T    C    721.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF566;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000392170    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:755,60,0
19    37004938    rs2967505    T    C    1391.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_AMINO_ACID_CHANGE=S401;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37001597_37006601;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF260;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000523638    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1425,111,0
19    37005998    rs61743049    A    G    1244.59    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=85;Dels=0.0;FS=7.184;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.473;QD=14.64;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=M48T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37001597_37006601;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF260;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523638    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1275,0,1413
19    37039069    rs2912444    A    C    5771.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=L131V;SNPEFF_CODON_CHANGE=Tta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37034518_37039224;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF529;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334116    GT:AD:DP:GQ:PL    1/1:0,175:175:99:5771,454,0
19    37064267    rs3096618    C    T    334.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF529;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334116    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:368,27,0
19    37065914    rs3108597    G    A    171.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF529;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334116    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
19    37068081    rs2912410    G    C    209.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF529;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334116    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
19    37068235    rs3108598    T    C    590.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF529;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334116    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:624,48,0
19    37241141    rs1673082    A    G    999.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.44;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,26:26:75.25:1032,75,0
19    37241829    rs11669642    G    A    473.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.83;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:14:39.11:507,39,0
19    37309181    rs10564276    TCTG    T    207.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=32.6095;IndelType=D;MQ=61.53;MQ0=0;QD=29.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF790;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356725    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:249,18,0
19    37310344    rs3745775    T    C    627.70    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.273;DB;DP=45;Dels=0.0;FS=1.143;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.633;QD=13.95;ReadPosRankSum=-1.77;SNPEFF_AMINO_ACID_CHANGE=Q301R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37309224_37311016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF790;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356725    GT:AD:DP:GQ:PL    0/1:20,25:45:99:658,0,715
19    37383253    rs74941316    T    G    652.50    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.216;DB;DP=53;Dels=0.0;FS=5.94;HRun=1;HaplotypeScore=1.6281;MQ=59.56;MQ0=0;MQRankSum=0.714;QD=12.31;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=Q147P;SNPEFF_CODON_CHANGE=cAa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37382253_37383373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF829;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391711    GT:AD:DP:GQ:PL    0/1:27,26:53:99:682,0,853
19    37399412    rs10418144    C    T    607.12    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=3.548;DB;DP=44;Dels=0.0;FS=1.595;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.846;QD=13.8;ReadPosRankSum=2.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF829;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391711    GT:AD:DP:GQ:PL    0/1:23,21:44:99:637,0,622
19    37416022    rs1667382    C    A    714.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333987    GT:AD:DP:GQ:PL    1/1:0,20:20:57.15:747,57,0
19    37427879    rs551717    A    G    255.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=2.515;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.551;QD=17.05;ReadPosRankSum=1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333987    GT:AD:DP:GQ:PL    0/1:5,10:15:99:286,0,166
19    37441111    rs571294    C    T    1585.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.68;MQ0=0;QD=34.47;SNPEFF_AMINO_ACID_CHANGE=H288;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37440414_37443645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415168    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1619,120,0
19    37441365    rs547483    T    C    841.45    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.784;DB;DP=61;Dels=0.0;FS=3.747;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=1.675;QD=13.79;ReadPosRankSum=-1.736;SNPEFF_AMINO_ACID_CHANGE=M373T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37440414_37443645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415168    GT:AD:DP:GQ:PL    0/1:32,29:61:99:871,0,943
19    37441462    rs546589    T    C    1266.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_AMINO_ACID_CHANGE=T405;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37440414_37443645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415168    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1299,99,0
19    37441980    rs1644634    A    G    2024.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=Q578R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37440414_37443645;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415168    GT:AD:DP:GQ:PL    1/1:0,63:64:99:2057,153,0
19    37442078    rs4806380    T    C    352.80    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=14.7;ReadPosRankSum=0.277;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333987    GT:AD:DP:GQ:PL    0/1:11,13:24:99:383,0,360
19    37465175    rs1375476    C    T    390.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=35.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427117    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:424,33,0
19    37465414    rs1375477    A    G    1295.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427117    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1328,99,0
19    37482068    rs1644679    T    G    3031.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.53;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:1,97:98:99:3064,235,0
19    37482151    rs1667354    A    G    2810.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.27;SNPEFF_AMINO_ACID_CHANGE=D160G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37482078_37482201;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444991    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2843,217,0
19    37482765    rs1644681    T    C    473.26    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.78;MQ0=0;QD=21.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:0,22:22:42.12:506,42,0
19    37482766    rs7248693    G    A    201.48    SnpCluster    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.817;QD=9.59;ReadPosRankSum=-1.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    0/1:9,12:21:99:231,0,239
19    37482772    rs1644682    G    A    475.22    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:508,39,0
19    37482817    rs2547049    G    A    367.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:400,30,0
19    37487046    rs1644695    C    T    90.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    37487632    rs935706    G    A    785.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_AMINO_ACID_CHANGE=A215T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:819,63,0
19    37487723    rs935707    G    A    704.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=35.23;SNPEFF_AMINO_ACID_CHANGE=R245H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:738,54,0
19    37487866    rs1667363    A    T    859.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.04;SNPEFF_AMINO_ACID_CHANGE=S293C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:892,66,0
19    37487873    rs1667364    C    A    935.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=34.65;SNPEFF_AMINO_ACID_CHANGE=A295E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    1/1:0,27:27:72.22:968,72,0
19    37487975    rs16971886    G    A    403.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.382;DB;DP=35;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.9578;MQ=58.26;MQ0=0;MQRankSum=0.857;QD=11.53;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=R329H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    0/1:20,15:35:99:434,0,610
19    37488055    rs10405238    T    G    621.70    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=45;Dels=0.0;FS=2.549;HRun=1;HaplotypeScore=1.565;MQ=59.49;MQ0=0;MQRankSum=0.239;QD=13.82;ReadPosRankSum=-0.102;SNPEFF_AMINO_ACID_CHANGE=Y356D;SNPEFF_CODON_CHANGE=Tac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488137;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433993    GT:AD:DP:GQ:PL    0/1:24,21:45:99:652,0,719
19    37488197    rs1345748    G    A    1510.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=36.85;SNPEFF_AMINO_ACID_CHANGE=C471Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455427    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1544,114,0
19    37488299    rs1363752    A    G    1483.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=E505G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455427    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1517,123,0
19    37488472    rs1644698    C    G    365.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.49;SNPEFF_AMINO_ACID_CHANGE=P563A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455427    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:399,33,0
19    37488481    rs1363753    G    C    243.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=24.35;SNPEFF_AMINO_ACID_CHANGE=G566R;SNPEFF_CODON_CHANGE=Ggt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37487219_37488834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455427    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:277,24,0
19    37488499    rs1667366    T    C    108.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=21.63;SNPEFF_AMINO_ACID_CHANGE=*572R;SNPEFF_CODON_CHANGE=Tga/Cga;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_19_37487219_37488834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF568;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000455427    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:141,12,0
19    37579810    rs35162188    G    A    41.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF420;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304239    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    37581795    rs8101338    C    T    69.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=-1.231;QD=11.51;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF420;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304239    GT:AD:DP:GQ:PL    0/1:3,3:6:69.41:99,0,69
19    37605917    rs7258360    G    A    369.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF420;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304239    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:402,30,0
19    37606028    rs4806412    T    C    1080.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF420;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304239    GT:AD:DP:GQ:PL    1/1:0,37:37:87.22:1113,87,0
19    37606151    rs11670374    T    C    365.74    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.114;DB;DP=19;Dels=0.0;FS=2.645;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.184;QD=19.25;ReadPosRankSum=-1.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF420;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304239    GT:AD:DP:GQ:PL    0/1:6,13:19:99:396,0,195
19    37617892    rs10673656    G    GTAT    347.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=18.3447;IndelType=I;MQ=48.05;MQ0=0;QD=57.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF420;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304239    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:390,18,0
19    37620026    rs193011540    A    G    670.88    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.119;QD=20.97;ReadPosRankSum=-0.873;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF420;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304239    GT:AD:DP:GQ:PL    0/1:11,21:32:99:701,0,318
19    37641649    rs55856280    C    T    306.40    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.573;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.8308;MQ=58.63;MQ0=0;MQRankSum=-0.922;QD=18.02;ReadPosRankSum=-1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355533    GT:AD:DP:GQ:PL    0/1:7,10:17:99:336,0,193
19    37642862    .    A    C    80.88    MQFilter40    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.006;DP=34;Dels=0.0;FS=32.475;HRun=2;HaplotypeScore=0.0;MQ=37.3;MQ0=6;MQRankSum=-0.525;QD=2.38;ReadPosRankSum=1.707;SNPEFF_AMINO_ACID_CHANGE=S592A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37641004_37644508;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292841    GT:AD:DP:GQ:PL    0/1:16,18:34:99:111,0,385
19    37642917    rs77675231    G    A    592.33    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.07;MQ0=8;QD=23.69;SNPEFF_AMINO_ACID_CHANGE=H573;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37641004_37644508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292841    GT:AD:DP:GQ:PL    1/1:4,21:25:48.13:625,48,0
19    37642922    rs79071992    C    T    495.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.52;MQ0=10;QD=19.8;SNPEFF_AMINO_ACID_CHANGE=V572I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37641004_37644508;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292841    GT:AD:DP:GQ:PL    1/1:6,19:25:39.13:528,39,0
19    37644051    rs57916401    T    C    929.61    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.688;DB;DP=91;Dels=0.0;FS=1.777;HRun=0;HaplotypeScore=1.7803;MQ=52.01;MQ0=0;MQRankSum=-6.274;QD=10.22;ReadPosRankSum=0.949;SNPEFF_AMINO_ACID_CHANGE=A195;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37641004_37644508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292841    GT:AD:DP:GQ:PL    0/1:54,37:91:99:960,0,1683
19    37646994    rs112401881    C    T    263.79    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=19;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-0.122;QD=13.88;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292841    GT:AD:DP:GQ:PL    0/1:9,10:19:99:294,0,315
19    37676528    rs75662394    G    A    539.90    MQFilter40    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.347;DB;DP=38;Dels=0.0;FS=7.847;HRun=0;HaplotypeScore=0.0;MQ=39.14;MQ0=2;MQRankSum=-2.327;QD=14.21;ReadPosRankSum=-0.38;SNPEFF_AMINO_ACID_CHANGE=A225;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37675724_37677830;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000312908    GT:AD:DP:GQ:PL    0/1:20,18:38:99:570,0,537
19    37677748    rs45626541    T    A    1662.60    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=3.136;DB;DP=84;Dels=0.0;FS=13.856;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.456;QD=19.79;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=I176L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37675722_37678146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000531805    GT:AD:DP:GQ:PL    0/1:32,52:84:99:1693,0,928
19    37681098    rs28701616    G    A    862.91    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.21;MQ0=0;MQRankSum=0.133;QD=13.7;ReadPosRankSum=-0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF585B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527838    GT:AD:DP:GQ:PL    0/1:32,31:63:99:893,0,892
19    37721404    rs56895666    T    TA    102.91    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.619;DB;DP=27;FS=7.858;HRun=14;HaplotypeScore=165.4352;IndelType=I;MQ=54.83;MQ0=0;MQRankSum=-0.784;QD=3.81;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF383;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352998    GT:AD:DP:GQ:PL    0/1:19,7:27:99:142,0,149
19    37726322    rs320879    A    G    114.29    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.86;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF383;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352998    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:144,0,28
19    37838911    rs1373991    T    C    93.99    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.43;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324411    GT:AD:DP:GQ:PL    0/1:3,4:7:58.27:124,0,58
19    37854235    rs3745765    G    T    1180.33    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.431;DB;DP=65;Dels=0.0;FS=0.952;HRun=0;HaplotypeScore=2.5885;MQ=60.0;MQ0=0;MQRankSum=0.126;QD=18.16;ReadPosRankSum=-1.875;SNPEFF_AMINO_ACID_CHANGE=S240I;SNPEFF_CODON_CHANGE=aGc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37853011_37855348;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HKR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544914    GT:AD:DP:GQ:PL    0/1:28,37:65:99:1210,0,845
19    37879589    rs4452075    A    G    812.73    PASS    AB=0.383;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.797;DB;DP=47;Dels=0.0;FS=2.736;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.784;QD=17.29;ReadPosRankSum=-0.142;SNPEFF_AMINO_ACID_CHANGE=H161R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_37879208_37883968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF527;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436120    GT:AD:DP:GQ:PL    0/1:18,29:47:99:843,0,620
19    37918609    rs7254009    C    T    200.82    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.678;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.208;QD=11.81;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF569;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316950    GT:AD:DP:GQ:PL    0/1:9,8:17:99:231,0,288
19    37936025    rs2303131    G    A    72.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.42;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF569;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316950    GT:AD:DP:GQ:PL    0/1:2,3:5:70.24:102,0,70
19    37966923    rs4801803    C    T    166.72    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.035;DB;DP=28;Dels=0.0;FS=1.983;HRun=2;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.398;QD=5.95;ReadPosRankSum=0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF570;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330173    GT:AD:DP:GQ:PL    0/1:20,8:28:99:197,0,618
19    37967214    rs7253091    C    T    147.67    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=22;Dels=0.0;FS=2.817;HRun=1;HaplotypeScore=4.4444;MQ=60.0;MQ0=0;MQRankSum=-0.916;QD=6.71;ReadPosRankSum=-0.916;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF570;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330173    GT:AD:DP:GQ:PL    0/1:15,7:22:99:178,0,475
19    38024367    rs2279149    T    C    472.33    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.938;QD=16.29;ReadPosRankSum=1.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF793;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322299    GT:AD:DP:GQ:PL    0/1:14,15:29:99:502,0,453
19    38027715    rs34919776    G    GT    775.97    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.944;DB;DP=44;FS=0.0;HRun=3;HaplotypeScore=88.8363;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=1.834;QD=17.64;ReadPosRankSum=1.737;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF793;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322299    GT:AD:DP:GQ:PL    0/1:23,21:44:99:815,0,715
19    38040076    rs1564206    C    T    238.71    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=19;Dels=0.0;FS=3.245;HRun=2;HaplotypeScore=1.6828;MQ=58.78;MQ0=0;MQRankSum=0.449;QD=12.56;ReadPosRankSum=0.204;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022148.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316807    GT:AD:DP:GQ:PL    0/1:10,9:19:99:269,0,338
19    38055612    rs4802029    A    T    624.70    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.439;DB;DP=41;Dels=0.0;FS=4.506;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=15.24;ReadPosRankSum=0.978;SNPEFF_AMINO_ACID_CHANGE=L573H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38054707_38057193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF571;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328550    GT:AD:DP:GQ:PL    0/1:21,20:41:99:655,0,687
19    38056087    rs45542635    C    T    426.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.204;DB;DP=34;Dels=0.0;FS=10.736;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.067;QD=12.54;ReadPosRankSum=0.069;SNPEFF_AMINO_ACID_CHANGE=G415R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38054707_38057193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF571;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328550    GT:AD:DP:GQ:PL    0/1:17,17:34:99:456,0,483
19    38056574    rs28512414    T    A    539.90    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=0.558;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.315;QD=16.36;ReadPosRankSum=1.315;SNPEFF_AMINO_ACID_CHANGE=E252D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38054707_38057193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF571;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328550    GT:AD:DP:GQ:PL    0/1:16,17:33:99:570,0,569
19    38056763    rs8111790    C    G    570.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.283;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6517;MQ=59.47;MQ0=0;MQRankSum=1.45;QD=16.3;ReadPosRankSum=0.917;SNPEFF_AMINO_ACID_CHANGE=Q189H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38054707_38057193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF571;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328550    GT:AD:DP:GQ:PL    0/1:15,20:35:99:601,0,488
19    38077474    rs2306201    G    A    490.12    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6229;MQ=59.48;MQ0=0;MQRankSum=0.047;QD=11.14;ReadPosRankSum=0.687;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF571;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328550    GT:AD:DP:GQ:PL    0/1:25,19:44:99:520,0,811
19    38077661    rs8111055    G    A    1603.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.2368;MQ=58.69;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF571;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328550    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1637,132,0
19    38090759    rs17305228    C    G    223.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.663;QD=15.98;ReadPosRankSum=-0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF540;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316433    GT:AD:DP:GQ:PL    0/1:7,7:14:99:254,0,247
19    38135307    rs113253023    C    T    65.89    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.24;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477900    GT:AD:DP:GQ:PL    0/1:5,3:8:95.89:96,0,184
19    38135403    rs2972458    T    C    55.59    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-2.971;QD=3.47;ReadPosRankSum=0.788;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351218    GT:AD:DP:GQ:PL    0/1:12,4:16:85.58:86,0,440
19    38135444    rs71298747    C    CAAAAAG    1625.06    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.494;DB;DP=38;FS=4.639;HRun=0;HaplotypeScore=187.0926;IndelType=I;MQ=51.13;MQ0=0;MQRankSum=-4.108;QD=42.76;ReadPosRankSum=-2.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351218    GT:AD:DP:GQ:PL    0/1:22,14:38:99:1664,0,1253
19    38160565    rs113316386    C    T    1333.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.026;DB;DP=86;Dels=0.0;FS=6.889;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.276;QD=15.51;ReadPosRankSum=-0.112;SNPEFF_AMINO_ACID_CHANGE=S162N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38158650_38161457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF781;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358582    GT:AD:DP:GQ:PL    0/1:43,43:86:99:1364,0,1322
19    38189440    rs958305    T    C    1046.62    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.443;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.529;QD=15.17;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=K530R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38187264_38190796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF607;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395835    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1077,0,944
19    38189616    rs2075284    T    C    544.81    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.984;DB;DP=64;Dels=0.0;FS=7.179;HRun=2;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.484;QD=8.51;ReadPosRankSum=0.817;SNPEFF_AMINO_ACID_CHANGE=T471;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38187264_38190796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF607;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395835    GT:AD:DP:GQ:PL    0/1:40,24:64:99:575,0,1115
19    38190845    rs35039020    GT    G    452.52    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.434;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=66.0483;IndelType=D;MQ=58.78;MQ0=0;MQRankSum=0.265;QD=23.82;ReadPosRankSum=-0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF607;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355202    GT:AD:DP:GQ:PL    0/1:5,14:19:99:492,0,103
19    38202516    rs2909097    A    C    1759.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_AMINO_ACID_CHANGE=S2A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38202511_38202593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF607;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355202    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1792,132,0
19    38210009    rs16975299    T    C    131.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.098;QD=13.16;ReadPosRankSum=0.103;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_38209916_38210089;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF607;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395835    GT:AD:DP:GQ:PL    0/1:5,5:10:99:162,0,169
19    38229133    rs55697076    A    T    71.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=8.89;ReadPosRankSum=-1.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF573;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339503    GT:AD:DP:GQ:PL    0/1:4,4:8:99:101,0,136
19    38229202    rs74268405    TC    T    146.09    PASS    AB=0.878;AC=1;AF=0.50;AN=2;BaseQRankSum=2.356;DB;DP=43;FS=0.0;HRun=1;HaplotypeScore=480.6272;IndelType=D;MQ=50.73;MQ0=0;MQRankSum=-1.3;QD=3.4;ReadPosRankSum=0.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF573;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427026    GT:AD:DP:GQ:PL    0/1:37,6:43:99:185,0,267
19    38229378    rs1291    G    A    3307.27    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=5.176;DB;DP=242;DS;Dels=0.0;FS=2.209;HRun=0;HaplotypeScore=5.1532;MQ=59.06;MQ0=0;MQRankSum=0.38;QD=13.67;ReadPosRankSum=0.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF573;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427026    GT:AD:DP:GQ:PL    0/1:127,115:242:99:3307,0,3501
19    38229824    rs3095726    T    C    768.65    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.175;DB;DP=52;Dels=0.0;FS=2.419;HRun=0;HaplotypeScore=0.9159;MQ=59.64;MQ0=0;MQRankSum=0.009;QD=14.78;ReadPosRankSum=0.083;SNPEFF_AMINO_ACID_CHANGE=M435V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38229203_38231095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF573;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357309    GT:AD:DP:GQ:PL    0/1:28,24:52:99:799,0,907
19    38283126    rs241959    T    C    2120.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF573;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480587    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2154,157,0
19    38376103    rs73027454    A    G    1012.53    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=3.232;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=-0.898;QD=10.77;ReadPosRankSum=0.258;SNPEFF_AMINO_ACID_CHANGE=F2697;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    0/1:56,38:94:99:1043,0,1739
19    38376485    rs10408510    T    A    3646.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=H2570L;SNPEFF_CODON_CHANGE=cAt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3646,268,0
19    38377409    rs7252765    A    T    1043.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=V2262E;SNPEFF_CODON_CHANGE=gTa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    1/1:0,34:34:87.21:1077,87,0
19    38377564    rs7253969    T    C    4494.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.81;SNPEFF_AMINO_ACID_CHANGE=K2210;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4494,358,0
19    38377773    rs34785154    G    A    3626.39    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=232;DS;Dels=0.0;FS=2.998;HRun=1;HaplotypeScore=1.5616;MQ=59.5;MQ0=0;MQRankSum=-0.574;QD=15.63;ReadPosRankSum=0.316;SNPEFF_AMINO_ACID_CHANGE=R2141W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    0/1:114,118:232:99:3626,0,3307
19    38378107    rs60704260    G    A    1927.19    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.687;DB;DP=122;Dels=0.0;FS=8.818;HRun=0;HaplotypeScore=1.4538;MQ=59.47;MQ0=0;MQRankSum=-0.53;QD=15.8;ReadPosRankSum=-0.368;SNPEFF_AMINO_ACID_CHANGE=S2029;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    0/1:53,68:122:99:1957,0,1487
19    38378539    rs10422056    G    C    4777.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.56;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=N1885K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    1/1:0,137:137:99:4777,349,0
19    38379446    rs6508750    C    T    2763.66    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=170;Dels=0.0;FS=1.238;HRun=1;HaplotypeScore=2.0321;MQ=59.57;MQ0=0;MQRankSum=-0.579;QD=16.26;ReadPosRankSum=0.085;SNPEFF_AMINO_ACID_CHANGE=R1583Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    0/1:74,95:170:99:2794,0,1973
19    38380396    .    G    A    769.59    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.141;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=13.99;ReadPosRankSum=0.194;SNPEFF_AMINO_ACID_CHANGE=N1266;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38375572_38380916;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    0/1:30,25:55:99:800,0,927
19    38382328    rs953370    C    T    1603.31    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=4.834;DB;DP=136;Dels=0.0;FS=3.177;HRun=0;HaplotypeScore=4.1703;MQ=60.0;MQ0=0;MQRankSum=-0.601;QD=11.79;ReadPosRankSum=0.306;SNPEFF_AMINO_ACID_CHANGE=P1047;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38382192_38382460;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    0/1:79,57:136:99:1633,0,2397
19    38384421    rs3894129    C    G    3099.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=32.97;SNPEFF_AMINO_ACID_CHANGE=G602A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38383218_38386096;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR87;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303868    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3132,241,0
19    38572894    rs45572940    C    T    391.44    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=42;Dels=0.0;FS=2.846;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.655;QD=9.32;ReadPosRankSum=0.2;SNPEFF_AMINO_ACID_CHANGE=P230L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38571896_38573739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000222345    GT:AD:DP:GQ:PL    0/1:26,16:42:99:421,0,745
19    38590700    rs56110924    T    C    419.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.883;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.28;MQ0=0;MQRankSum=-1.903;QD=13.1;ReadPosRankSum=-0.923;SNPEFF_AMINO_ACID_CHANGE=Y588;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38590602_38590790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222345    GT:AD:DP:GQ:PL    0/1:16,16:32:99:449,0,505
19    38621473    rs861304    G    A    379.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222345    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:413,33,0
19    38633159    rs2304132    C    T    3124.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.31;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIPA1L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222345    GT:AD:DP:GQ:PL    1/1:0,99:101:99:3157,259,0
19    38704153    rs10410552    G    A    73.11    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.44;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434076    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,118
19    38706677    rs2278430    C    G    103.70    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.242;DB;DP=22;Dels=0.0;FS=5.972;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=4.71;ReadPosRankSum=0.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434076    GT:AD:DP:GQ:PL    0/1:14,8:22:99:134,0,471
19    38706989    rs2278431    G    A    322.29    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=58.84;MQ0=0;MQRankSum=-1.823;QD=16.11;ReadPosRankSum=-0.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434076    GT:AD:DP:GQ:PL    0/1:9,11:20:99:352,0,289
19    38708398    rs2304175    A    C    416.51    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=39;Dels=0.0;FS=3.005;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.531;QD=10.68;ReadPosRankSum=-0.183;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438365    GT:AD:DP:GQ:PL    0/1:20,19:39:99:447,0,671
19    38709568    rs2255456    C    T    1222.82    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.531;DB;DP=70;Dels=0.0;FS=2.682;HRun=0;HaplotypeScore=2.7782;MQ=59.34;MQ0=0;MQRankSum=-0.19;QD=17.47;ReadPosRankSum=1.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412732    GT:AD:DP:GQ:PL    0/1:29,41:70:99:1253,0,760
19    38743371    rs55997240    C    T    147.77    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=18.47;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R14A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301242    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,100
19    38817110    rs7250755    A    G    582.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263372    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:616,48,0
19    38851364    rs2286477    C    A    565.39    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.435;DB;DP=52;Dels=0.0;FS=3.699;HRun=0;HaplotypeScore=0.9332;MQ=59.56;MQ0=0;MQRankSum=0.737;QD=10.87;ReadPosRankSum=-1.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466060    GT:AD:DP:GQ:PL    0/1:31,21:52:99:595,0,1064
19    38861333    rs1052375    G    A    862.05    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.534;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2611;MQ=59.67;MQ0=0;MQRankSum=-0.135;QD=12.32;ReadPosRankSum=-0.258;SNPEFF_AMINO_ACID_CHANGE=P1087;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38861166_38861583;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CATSPERG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000410018    GT:AD:DP:GQ:PL    0/1:36,34:70:99:892,0,1003
19    38896204    rs117354953    T    G    904.82    PASS    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.762;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.483;QD=18.85;ReadPosRankSum=0.954;SNPEFF_AMINO_ACID_CHANGE=C201G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38896159_38896275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM98C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343358    GT:AD:DP:GQ:PL    0/1:17,31:48:99:935,0,420
19    38905683    rs10412098    A    G    173.33    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=16;Dels=0.0;FS=3.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=10.83;ReadPosRankSum=-1.27;SNPEFF_AMINO_ACID_CHANGE=G248;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38905488_38905763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293062    GT:AD:DP:GQ:PL    0/1:9,7:16:99:203,0,298
19    38907585    rs3810342    T    G    69.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.7;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASGRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293062    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,181
19    38935280    rs2229139    A    G    245.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=L198;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38935224_38935317;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
19    38939408    rs10406027    T    C    1140.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=A359;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38939289_38939453;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,38:38:96.25:1173,96,0
19    38939505    rs4476278    T    C    283.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:316,24,0
19    38942714    rs4802469    G    A    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
19    38943728    rs12460768    G    A    124.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
19    38945851    rs7254832    T    C    1927.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1961,147,0
19    38946182    rs2288888    G    A    786.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9472;MQ=54.81;MQ0=0;QD=30.26;SNPEFF_AMINO_ACID_CHANGE=S556;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38946091_38946186;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,24:26:63.19:820,63,0
19    38946215    rs2288889    G    C    512.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.5;MQ0=0;QD=26.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,19:19:48.11:546,48,0
19    38948356    rs2071085    T    C    512.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:546,45,0
19    38948420    rs73044990    C    G    188.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=20.92;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    0/1:3,6:9:54.95:218,0,55
19    38948769    rs78835441    C    T    822.30    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=1.086;DB;DP=55;Dels=0.0;FS=3.786;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.362;QD=14.95;ReadPosRankSum=0.463;SNPEFF_AMINO_ACID_CHANGE=D668;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38948691_38948932;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    0/1:28,27:55:99:852,0,853
19    38949729    rs4802474    T    G    327.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:361,27,0
19    38949904    rs3745847    C    T    735.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=26.26;SNPEFF_AMINO_ACID_CHANGE=P762;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38949786_38949978;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,28:28:57.19:768,57,0
19    38950947    rs2304147    C    T    548.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:582,48,0
19    38953996    rs2304148    A    G    184.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:217,18,0
19    38956803    rs2228069    G    A    209.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.22;SNPEFF_AMINO_ACID_CHANGE=T981;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_38956731_38957038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:243,18,0
19    38989658    rs138398264    CGCAGG    C    278.64    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=73.8503;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=0.572;QD=27.86;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355481    GT:AD:DP:GQ:PL    0/1:4,6:10:99:318,0,150
19    39086240    rs2287737    T    C    187.28    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=17;Dels=0.0;FS=2.331;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-2.011;QD=11.02;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423454    GT:AD:DP:GQ:PL    0/1:9,8:17:99:217,0,309
19    39086580    rs17847683    A    G    1088.87    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.211;DB;DP=73;Dels=0.0;FS=6.416;HRun=0;HaplotypeScore=0.5784;MQ=59.68;MQ0=0;MQRankSum=-0.106;QD=14.92;ReadPosRankSum=-0.831;SNPEFF_AMINO_ACID_CHANGE=D726;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39086579_39086641;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1119,0,908
19    39100462    rs2287735    G    C    307.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=22;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.669;QD=13.98;ReadPosRankSum=-0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:11,11:22:99:337,0,340
19    39100594    rs2287734    G    A    673.03    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8188;MQ=59.07;MQ0=0;MQRankSum=0.164;QD=14.96;ReadPosRankSum=-0.258;SNPEFF_AMINO_ACID_CHANGE=P294;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39100549_39100665;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:22,23:45:99:703,0,673
19    39100688    rs13345914    G    A    369.70    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.553;QD=21.75;ReadPosRankSum=0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:6,11:17:99:400,0,193
19    39100737    rs13345885    A    G    257.91    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=21.49;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:3,9:12:88.78:288,0,89
19    39100808    rs73552634    C    T    100.81    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=20.16;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:1,4:5:7.65:130,0,8
19    39101870    rs2287732    T    C    425.57    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.981;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.599;QD=15.2;ReadPosRankSum=1.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:13,15:28:99:456,0,348
19    39101879    rs2287731    G    A    419.68    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.11;QD=14.47;ReadPosRankSum=1.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:13,16:29:99:450,0,337
19    39106924    rs2303041    A    G    327.18    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.511;DB;DP=19;Dels=0.0;FS=2.527;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.122;QD=17.22;ReadPosRankSum=2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP4K1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221409    GT:AD:DP:GQ:PL    0/1:9,10:19:99:357,0,208
19    39122923    rs1862371    T    C    204.54    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=13;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.141;QD=15.73;ReadPosRankSum=-1.309;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3K;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248342    GT:AD:DP:GQ:PL    0/1:6,7:13:99:235,0,160
19    39191383    rs2112649    G    C    1426.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252699    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1459,111,0
19    39196745    rs3745859    C    T    756.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.66;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.961;QD=14.54;ReadPosRankSum=0.748;SNPEFF_AMINO_ACID_CHANGE=N182;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39196684_39196771;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252699    GT:AD:DP:GQ:PL    0/1:26,26:52:99:786,0,591
19    39212400    rs2306197    C    T    45.85    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=5.09;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489451    GT:AD:DP:GQ:PL    0/1:6,3:9:75.84:76,0,172
19    39219050    .    GCTCCTCCTC    G    276.74    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DP=15;FS=3.01;HRun=0;HaplotypeScore=154.7297;IndelType=D;MQ=57.06;MQ0=0;MQRankSum=1.203;QD=18.45;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328867    GT:AD:DP:GQ:PL    0/1:9,6:15:99:316,0,181
19    39221947    rs4801859    A    T    104.19    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=14.88;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390009    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,100
19    39224413    rs4801861    A    G    771.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.09;SNPEFF_AMINO_ACID_CHANGE=F629;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39224343_39224421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328867    GT:AD:DP:GQ:PL    1/1:0,21:22:60.20:805,60,0
19    39227128    rs148871822    G    T    54.27    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=2.054;QD=6.03;ReadPosRankSum=-1.683;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252699    GT:AD:DP:GQ:PL    0/1:6,3:9:84.26:84,0,174
19    39227147    rs12981058    A    C    37.21    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=11;Dels=0.0;FS=7.404;HRun=1;HaplotypeScore=0.0;MQ=42.94;MQ0=0;MQRankSum=-1.531;QD=3.38;ReadPosRankSum=-0.566;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252699    GT:AD:DP:GQ:PL    0/1:8,3:11:67.21:67,0,257
19    39228868    rs34488364    G    GCA    576.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=27.1875;IndelType=I;MQ=56.71;MQ0=0;QD=52.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328867    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:619,33,0
19    39233146    rs936524    A    G    262.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=A110;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39233050_39233168;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328867    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:295,24,0
19    39234362    rs57341847    A    G    33.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.43;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328867    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:64,0,36
19    39234879    rs76443569    T    C    196.50    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.946;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.837;QD=8.19;ReadPosRankSum=-0.899;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_39234569_39235114;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CAPN12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328867    GT:AD:DP:GQ:PL    0/1:14,10:24:99:226,0,480
19    39281540    rs147201724    T    A    48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.98;MQ0=15;QD=2.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314980    GT:AD:DP:GQ:PL    1/1:0,18:18:9:80,9,0
19    39294466    rs11881973    C    A    199.18    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=20;Dels=0.0;FS=1.74;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.76;QD=9.96;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307751    GT:AD:DP:GQ:PL    0/1:11,9:20:99:229,0,325
19    39297007    rs74176466    C    CA    304.42    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=49;FS=0.0;HRun=10;HaplotypeScore=169.4047;IndelType=I;MQ=57.93;MQ0=0;MQRankSum=0.769;QD=5.97;ReadPosRankSum=-0.744;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307751    GT:AD:DP:GQ:PL    0/1:34,17:49:99:343,0,558
19    39299208    rs12460812    A    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.48;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307751    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    39299312    rs117080893    G    A    320.18    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=3.843;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5114;MQ=50.86;MQ0=0;MQRankSum=-0.067;QD=6.53;ReadPosRankSum=-0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307751    GT:AD:DP:GQ:PL    0/1:32,17:49:99:350,0,425
19    39299362    rs1035525    A    G    699.32    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.454;DB;DP=59;Dels=0.0;FS=1.166;HRun=0;HaplotypeScore=0.9665;MQ=55.47;MQ0=0;MQRankSum=0.489;QD=11.85;ReadPosRankSum=1.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307751    GT:AD:DP:GQ:PL    0/1:31,28:59:99:729,0,816
19    39306425    rs2075588    A    C    302.94    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.84;MQ0=0;MQRankSum=0.555;QD=15.15;ReadPosRankSum=-3.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221418    GT:AD:DP:GQ:PL    0/1:7,13:20:99:333,0,221
19    39306529    rs58750431    C    T    250.83    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.385;DB;DP=27;Dels=0.0;FS=14.014;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.577;QD=9.29;ReadPosRankSum=-0.778;SNPEFF_AMINO_ACID_CHANGE=D284N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39306497_39306647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221418    GT:AD:DP:GQ:PL    0/1:17,10:27:99:281,0,421
19    39306803    rs2075587    G    C    104.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.88;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221418    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,100
19    39307893    rs73933065    G    C    38.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.71;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221418    GT:AD:DP:GQ:PL    0/1:1,2:3:23.47:68,0,23
19    39308190    rs17850798    C    T    115.28    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=56.85;MQ0=0;MQRankSum=1.159;QD=12.81;ReadPosRankSum=0.729;SNPEFF_AMINO_ACID_CHANGE=S125;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39308091_39308215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221418    GT:AD:DP:GQ:PL    0/1:5,4:9:99:145,0,101
19    39321899    rs73930206    G    A    378.33    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=28;Dels=0.0;FS=1.598;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.386;QD=13.51;ReadPosRankSum=-1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221418    GT:AD:DP:GQ:PL    0/1:13,14:28:99:408,0,375
19    39322087    rs9419    T    G    311.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.38;MQ0=0;MQRankSum=-0.572;QD=10.37;ReadPosRankSum=-0.064;SNPEFF_AMINO_ACID_CHANGE=E41A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39321949_39322156;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ECH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221418    GT:AD:DP:GQ:PL    0/1:18,12:30:99:341,0,545
19    39327264    .    AGG    A    203.36    PASS    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=3.529;DP=62;FS=14.703;HRun=2;HaplotypeScore=881.5917;IndelType=D;MQ=38.84;MQ0=0;MQRankSum=-1.579;QD=3.28;ReadPosRankSum=3.673;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    0/1:49,13:62:99:242,0,762
19    39327287    .    T    A    299.44    HaplotypeScoreFilter13;SnpCluster    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.688;DP=82;Dels=0.0;FS=35.841;HRun=3;HaplotypeScore=39.8832;MQ=43.79;MQ0=0;MQRankSum=-4.975;QD=3.65;ReadPosRankSum=3.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    0/1:45,37:82:99:329,0,1445
19    39327290    .    C    A    197.99    HaplotypeScoreFilter13;SnpCluster    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.995;DP=84;Dels=0.0;FS=28.227;HRun=5;HaplotypeScore=34.0188;MQ=44.62;MQ0=0;MQRankSum=-5.834;QD=2.36;ReadPosRankSum=2.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    0/1:49,35:84:99:228,0,1584
19    39327296    .    C    A    95.14    QDFilter2;SnpCluster    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.38;DP=92;Dels=0.0;FS=31.222;HRun=6;HaplotypeScore=7.34;MQ=46.48;MQ0=0;MQRankSum=-5.902;QD=1.03;ReadPosRankSum=-0.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    0/1:59,33:92:99:125,0,1829
19    39327856    rs2278009    A    T    37.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:69,6,0
19    39328145    rs2278010    A    C    387.40    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.621;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=11.74;ReadPosRankSum=-1.402;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    0/1:19,14:33:99:417,0,623
19    39329428    rs145851690    CTG    C    597.25    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.602;DB;DP=40;FS=1.925;HRun=0;HaplotypeScore=134.8965;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=14.93;ReadPosRankSum=-0.014;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    0/1:22,18:40:99:636,0,1050
19    39329516    rs75870432    C    T    478.64    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.795;DB;DP=79;Dels=0.0;FS=4.613;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.057;QD=6.06;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    0/1:48,31:79:99:509,0,1515
19    39329517    rs8111670    C    T    511.94    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.263;DB;DP=81;Dels=0.0;FS=5.933;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.014;QD=6.32;ReadPosRankSum=-0.484;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423415    GT:AD:DP:GQ:PL    0/1:49,32:81:99:542,0,1414
19    39331296    rs11083481    C    A    196.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221419    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:229,18,0
19    39334811    rs2278011    T    A    734.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221419    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:768,57,0
19    39334830    rs2278012    C    T    218.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221419    GT:AD:DP:GQ:PL    1/1:0,11:11:21.06:252,21,0
19    39338125    rs862454    G    A    357.58    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=22;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=16.25;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221419    GT:AD:DP:GQ:PL    0/1:9,13:22:99:388,0,259
19    39338142    rs862455    A    G    513.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221419    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:546,42,0
19    39362587    rs79770648    C    T    117.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RINL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340740    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
19    39390931    rs2053071    C    G    72.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.07;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313582    GT:AD:DP:GQ:PL    0/1:3,3:6:97.22:102,0,97
19    39396300    rs3136640    C    G    105.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=21.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313582    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:138,12,0
19    39398416    rs3136642    A    G    43.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFKBIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313582    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
19    39406167    rs9403    C    G    338.06    PASS    AB=0.133;AC=1;AF=0.50;AN=2;BaseQRankSum=1.187;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.004;QD=22.54;ReadPosRankSum=0.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455102    GT:AD:DP:GQ:PL    0/1:2,13:15:11.63:368,0,12
19    39407014    rs4801945    C    A    319.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455102    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:352,27,0
19    39408086    rs9749516    T    C    88.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455102    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    39408360    rs7508411    A    G    1652.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.82;MQ0=0;QD=28.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455102    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1685,132,0
19    39408688    rs4803034    C    G    239    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221431    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:272,21,0
19    39409236    rs11083489    C    A    295.36    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.393;QD=29.54;ReadPosRankSum=-0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221431    GT:AD:DP:GQ:PL    0/1:1,9:10:12.13:325,0,12
19    39410986    rs12460327    C    G    48.39    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=12.1;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221431    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:78,0,34
19    39412756    rs112110722    A    AT    239.69    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.527;DB;DP=37;FS=0.0;HRun=10;HaplotypeScore=99.7765;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=-0.122;QD=6.48;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221431    GT:AD:DP:GQ:PL    0/1:25,12:37:99:279,0,460
19    39416887    rs11544093    C    T    505.27    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=42;Dels=0.0;FS=4.887;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.117;QD=12.03;ReadPosRankSum=-1.46;SNPEFF_AMINO_ACID_CHANGE=E107;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39416845_39416940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221431    GT:AD:DP:GQ:PL    0/1:20,22:42:99:535,0,522
19    39421388    rs730078    A    G    589.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448145    GT:AD:DP:GQ:PL    1/1:0,20:20:51.13:623,51,0
19    39433299    rs8113389    A    G    1885.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;QD=33.09;SNPEFF_AMINO_ACID_CHANGE=Y262;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39432042_39433391;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292852    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1919,150,0
19    39433497    rs56659214    GT    G    292.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=59.7597;IndelType=D;MQ=55.19;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292852    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:334,27,0
19    39435485    rs10416055    G    A    616.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292852    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:649,48,0
19    39435933    rs11672849    C    G    89.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292852    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
19    39437258    rs35378193    TCA    T    1000.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=146.8197;IndelType=D;MQ=52.56;MQ0=0;QD=40.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292852    GT:AD:DP:GQ:PL    1/1:1,24:25:72.24:1043,72,0
19    39437270    rs2278412    G    A    494.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.83;MQ0=0;QD=26.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292852    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:528,42,0
19    39439196    .    G    A    446.05    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.711;DP=35;Dels=0.0;FS=14.079;HRun=0;HaplotypeScore=0.0;MQ=55.92;MQ0=0;MQRankSum=1.675;QD=12.74;ReadPosRankSum=1.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292852    GT:AD:DP:GQ:PL    0/1:18,17:35:99:476,0,529
19    39442992    rs12980086    G    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292852    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    39515939    rs533573    T    C    189.19    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.613;QD=7.88;ReadPosRankSum=-0.161;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292853    GT:AD:DP:GQ:PL    0/1:15,9:24:99:219,0,527
19    39589003    rs563873    T    C    171.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011443.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331256    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:204,18,0
19    39589334    rs560364    G    A    357.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011443.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331256    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:391,30,0
19    39589520    .    CACCAGTCGGGGAAGGATGGGGTTGGAGGGAGGG    C    2120.84    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=0;HaplotypeScore=422.7124;IndelType=D;MQ=37.5;MQ0=0;QD=176.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011443.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331256    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:2163,33,0
19    39590761    rs774909    G    A    406.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011443.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331256    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:439,33,0
19    39592138    rs1313617    C    T    616.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.82;SNPEFF_AMINO_ACID_CHANGE=T358;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39592106_39592177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011443.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331256    GT:AD:DP:GQ:PL    1/1:0,20:20:51.15:649,51,0
19    39597902    rs62120479    C    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011443.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331256    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    39666967    rs1529712    C    T    84.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321944    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
19    39691217    rs144574051    A    G    1140.25    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=66;Dels=0.0;FS=3.758;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=17.28;ReadPosRankSum=-0.351;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYCN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318438    GT:AD:DP:GQ:PL    0/1:29,37:66:99:1170,0,912
19    39734325    rs150748693    G    A    168.68    MQFilter40    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=21;Dels=0.0;FS=15.911;HRun=0;HaplotypeScore=0.0;MQ=35.16;MQ0=3;MQRankSum=-0.537;QD=8.03;ReadPosRankSum=-0.244;SNPEFF_AMINO_ACID_CHANGE=R180C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39734246_39734370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL28B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413851    GT:AD:DP:GQ:PL    0/1:10,11:21:99:199,0,184
19    39760069    rs30481    G    C    252.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL28A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331982    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:285,21,0
19    39908214    rs73033371    C    T    107.25    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3893;MQ=60.0;MQ0=0;MQRankSum=-1.247;QD=6.31;ReadPosRankSum=1.464;SNPEFF_AMINO_ACID_CHANGE=A196V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39908195_39908332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458508    GT:AD:DP:GQ:PL    0/1:11,6:17:99:137,0,253
19    39913324    rs3859552    C    G    304.45    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.873;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=56.92;MQ0=0;MQRankSum=0.735;QD=13.24;ReadPosRankSum=0.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478523    GT:AD:DP:GQ:PL    0/1:9,14:23:99:334,0,270
19    39913558    rs16973407    A    G    963.87    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.893;DB;DP=68;Dels=0.0;FS=6.952;HRun=0;HaplotypeScore=1.9692;MQ=58.98;MQ0=0;MQRankSum=1.143;QD=14.17;ReadPosRankSum=0.745;SNPEFF_AMINO_ACID_CHANGE=I563V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39913372_39914293;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458508    GT:AD:DP:GQ:PL    0/1:31,37:68:99:994,0,965
19    39914644    rs34350479    G    A    1527.86    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=2.562;DB;DP=79;Dels=0.0;FS=10.46;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-0.125;QD=19.34;ReadPosRankSum=0.075;SNPEFF_AMINO_ACID_CHANGE=K898;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39914373_39915522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000458508    GT:AD:DP:GQ:PL    0/1:32,47:79:99:1558,0,939
19    39923952    rs17627    G    A    445.06    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.059;DB;DP=47;Dels=0.0;FS=12.224;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.969;QD=9.47;ReadPosRankSum=-0.799;SNPEFF_AMINO_ACID_CHANGE=G134;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39923852_39924058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251453    GT:AD:DP:GQ:PL    0/1:29,18:47:99:475,0,868
19    39924129    rs566130    T    C    1466.52    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.453;DB;DP=119;Dels=0.0;FS=2.387;HRun=1;HaplotypeScore=7.6452;MQ=59.81;MQ0=0;MQRankSum=0.282;QD=12.32;ReadPosRankSum=-0.118;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251453    GT:AD:DP:GQ:PL    0/1:64,54:119:99:1497,0,1911
19    39926509    rs17628    A    C    673.78    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.907;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=-0.375;QD=12.48;ReadPosRankSum=-0.924;SNPEFF_AMINO_ACID_CHANGE=S9;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39926488_39926618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251453    GT:AD:DP:GQ:PL    0/1:26,28:54:99:704,0,862
19    39926521    rs17626    G    A    705.64    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.773;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.885;QD=12.38;ReadPosRankSum=-0.362;SNPEFF_AMINO_ACID_CHANGE=G5;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39926488_39926618;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251453    GT:AD:DP:GQ:PL    0/1:29,28:57:99:736,0,848
19    39926601    rs640000    C    T    339.74    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.507;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.967;QD=12.13;ReadPosRankSum=0.138;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011500.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396843    GT:AD:DP:GQ:PL    0/1:15,13:28:99:370,0,444
19    39930268    rs113180103    C    G    118.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.683;QD=13.17;ReadPosRankSum=-0.248;SNPEFF_AMINO_ACID_CHANGE=P19;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39930212_39930481;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011500.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396843    GT:AD:DP:GQ:PL    0/1:3,6:9:94.25:149,0,94
19    39932066    rs1865091    T    C    249.34    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=16;Dels=0.0;FS=2.307;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.573;QD=15.58;ReadPosRankSum=-0.705;SNPEFF_AMINO_ACID_CHANGE=L151P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39931930_39932082;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011500.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396843    GT:AD:DP:GQ:PL    0/1:6,10:16:99:279,0,192
19    39936502    rs1932    G    A    134.15    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=12.2;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011500.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396843    GT:AD:DP:GQ:PL    0/1:6,5:11:99:164,0,135
19    39944082    rs1130180    C    T    101.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=1.5616;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.9;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=Y54;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39943996_39944161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359191    GT:AD:DP:GQ:PL    0/1:2,4:6:57.10:131,0,57
19    39948871    rs71997695    CCCA    C    273.84    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=155.3014;IndelType=D;MQ=54.88;MQ0=0;MQRankSum=-1.061;QD=11.41;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359191    GT:AD:DP:GQ:PL    0/1:14,10:24:80.71:313,0,81
19    39949764    rs1529733    C    T    671.28    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=3.789;DB;DP=37;Dels=0.0;FS=5.87;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.294;QD=18.14;ReadPosRankSum=-1.562;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359191    GT:AD:DP:GQ:PL    0/1:15,22:37:99:701,0,361
19    39949897    rs76040174    G    A    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=9.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359191    GT:AD:DP:GQ:PL    0/1:2,2:4:56.16:67,0,56
19    39955515    rs2304216    C    T    927.37    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.389;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5367;MQ=60.0;MQ0=0;MQRankSum=-0.699;QD=12.7;ReadPosRankSum=-1.329;SNPEFF_AMINO_ACID_CHANGE=H212;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39955438_39955689;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378524    GT:AD:DP:GQ:PL    0/1:35,38:73:99:957,0,1013
19    39955791    rs1560730    T    C    102.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=3.522;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.35;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359191    GT:AD:DP:GQ:PL    0/1:5,4:9:99:132,0,138
19    39957030    rs4802030    C    T    162.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=14.78;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359191    GT:AD:DP:GQ:PL    0/1:5,6:11:99:193,0,136
19    39963828    rs45568533    T    A    457.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.635;DB;DP=30;Dels=0.0;FS=7.277;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.509;QD=15.25;ReadPosRankSum=0.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359191    GT:AD:DP:GQ:PL    0/1:12,18:30:99:487,0,402
19    39964247    rs4803244    G    A    107.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=15.35;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUPT5H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359191    GT:AD:DP:GQ:PL    0/1:3,4:7:99:137,0,105
19    39972766    rs62120691    G    A    400.49    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.455;QD=12.14;ReadPosRankSum=-0.682;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314349    GT:AD:DP:GQ:PL    0/1:20,13:33:99:430,0,713
19    39976043    rs56145082    C    G    115.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=19.27;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314349    GT:AD:DP:GQ:PL    0/1:2,4:6:61.50:146,0,61
19    39976464    rs4803245    C    G    188.63    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=22;Dels=0.0;FS=2.643;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.2;QD=8.57;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314349    GT:AD:DP:GQ:PL    0/1:13,9:22:99:219,0,453
19    39976684    rs4803246    T    C    301.21    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.205;QD=12.55;ReadPosRankSum=0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314349    GT:AD:DP:GQ:PL    0/1:14,10:24:99:331,0,505
19    39976734    rs4803247    G    A    790.39    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=64;Dels=0.0;FS=6.85;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=1;MQRankSum=-0.094;QD=12.35;ReadPosRankSum=-1.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314349    GT:AD:DP:GQ:PL    0/1:36,28:64:99:820,0,1117
19    39977022    rs45611439    C    T    1059.64    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=67;Dels=0.0;FS=5.069;HRun=0;HaplotypeScore=0.9469;MQ=58.26;MQ0=0;MQRankSum=0.279;QD=15.82;ReadPosRankSum=-0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314349    GT:AD:DP:GQ:PL    0/1:29,38:67:99:1090,0,885
19    39978610    rs74178079    GTGTA    G    819.67    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=5.181;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=177.607;IndelType=D;MQ=56.9;MQ0=0;MQRankSum=-1.2;QD=21.02;ReadPosRankSum=-0.319;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314349    GT:AD:DP:GQ:PL    0/1:20,19:39:99:859,0,1261
19    39979083    rs191255793    C    G    476.35    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.113;QD=16.43;ReadPosRankSum=1.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314349    GT:AD:DP:GQ:PL    0/1:14,15:29:99:506,0,442
19    39989515    .    T    C    38.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.72;ReadPosRankSum=-1.026;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205143    GT:AD:DP:GQ:PL    0/1:2,2:4:33.20:69,0,33
19    39994711    rs1110627    T    C    278.01    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.992;DB;DP=35;Dels=0.0;FS=8.869;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=7.94;ReadPosRankSum=-0.567;SNPEFF_AMINO_ACID_CHANGE=L218P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_39994711_39994928;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205143    GT:AD:DP:GQ:PL    0/1:22,13:35:99:308,0,672
19    40023308    rs1123301    A    G    555.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.07;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=A45;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40021630_40023494;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EID2B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326282    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:589,45,0
19    40197924    rs4830    T    C    612.77    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.857;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.692;QD=10.39;ReadPosRankSum=1.609;SNPEFF_AMINO_ACID_CHANGE=C67R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40197818_40198028;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392052    GT:AD:DP:GQ:PL    0/1:36,23:59:99:643,0,1194
19    40199914    rs10755    C    G    674.14    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.744;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.152;QD=16.05;ReadPosRankSum=1.87;SNPEFF_AMINO_ACID_CHANGE=F127L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40199837_40200087;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000392052    GT:AD:DP:GQ:PL    0/1:19,23:42:99:704,0,571
19    40200085    rs2286759    T    C    68.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.62;ReadPosRankSum=-0.922;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360675    GT:AD:DP:GQ:PL    0/1:4,4:8:98.95:99,0,136
19    40224833    rs375867    A    T    138.14    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.312;QD=10.63;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:7,6:13:99:168,0,242
19    40224869    rs391646    T    A    265.41    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=20;Dels=0.0;FS=7.858;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.671;QD=13.27;ReadPosRankSum=-0.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:11,9:20:99:295,0,382
19    40224887    rs391660    T    C    328.03    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.387;DB;DP=25;Dels=0.0;FS=10.193;HRun=0;HaplotypeScore=2.1036;MQ=59.07;MQ0=0;MQRankSum=0.082;QD=13.12;ReadPosRankSum=-1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:13,12:25:99:358,0,453
19    40224901    rs453827    G    A    426.94    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=4.983;DB;DP=36;Dels=0.0;FS=11.19;HRun=0;HaplotypeScore=1.445;MQ=59.36;MQ0=0;MQRankSum=1.15;QD=11.86;ReadPosRankSum=0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:21,15:36:99:457,0,563
19    40224986    rs384138    A    G    1657.64    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.977;DB;DP=116;Dels=0.0;FS=0.802;HRun=0;HaplotypeScore=0.8667;MQ=59.8;MQ0=0;MQRankSum=-1.955;QD=14.29;ReadPosRankSum=-0.839;SNPEFF_AMINO_ACID_CHANGE=N80;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40224923_40225133;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:59,57:116:99:1688,0,1900
19    40225168    rs399641    T    A    975.74    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.56;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7256;MQ=60.0;MQ0=0;MQRankSum=-0.975;QD=19.91;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:19,30:49:99:1006,0,638
19    40225319    rs385520    A    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    40225646    rs17608    G    A    423.75    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.356;DB;DP=33;Dels=0.0;FS=4.041;HRun=0;HaplotypeScore=2.8822;MQ=59.3;MQ0=0;MQRankSum=-0.622;QD=12.84;ReadPosRankSum=0.057;SNPEFF_AMINO_ACID_CHANGE=A28V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40225637_40225713;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:17,16:33:99:454,0,575
19    40225857    rs372081    G    T    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.026;QD=10.36;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:2,2:4:64.04:71,0,64
19    40228350    rs364911    T    C    98.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.04;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:3,4:7:99:128,0,102
19    40229409    rs12611334    C    G    1294.11    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=104;Dels=0.0;FS=5.035;HRun=0;HaplotypeScore=1.7653;MQ=59.56;MQ0=0;MQRankSum=0.209;QD=12.44;ReadPosRankSum=-0.972;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221804    GT:AD:DP:GQ:PL    0/1:58,46:104:99:1324,0,1930
19    40276203    rs35955916    G    T    362.42    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.659;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=0.843;QD=14.5;ReadPosRankSum=0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LEUTX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396841    GT:AD:DP:GQ:PL    0/1:12,13:25:99:392,0,375
19    40321524    rs7247063    C    A    33.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221801    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:63,0,34
19    40325016    rs2072290    T    C    118.30    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.68;QD=6.96;ReadPosRankSum=-0.793;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221801    GT:AD:DP:GQ:PL    0/1:11,6:17:99:148,0,401
19    40328615    rs616650    C    T    45.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=15.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221801    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:75,0,29
19    40354067    rs2405    T    C    235.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.377;DB;DP=12;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.382;QD=19.6;ReadPosRankSum=2.262;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:4,8:12:94.54:265,0,95
19    40354576    rs62957960    C    A    281.43    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.264;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.474;QD=16.55;ReadPosRankSum=0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:5,12:17:99:311,0,154
19    40357163    rs887805    G    A    43.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=14.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:74,6,0
19    40357247    rs887806    A    G    232.53    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.56;QD=10.57;ReadPosRankSum=-1.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:12,10:22:99:263,0,432
19    40357341    rs4436880    A    G    669.01    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.811;DB;DP=52;Dels=0.0;FS=2.461;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.691;QD=12.87;ReadPosRankSum=-0.577;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:24,28:52:99:699,0,737
19    40357360    rs2075097    C    G    558.48    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.927;DB;DP=53;Dels=0.0;FS=3.828;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=10.54;ReadPosRankSum=-0.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:26,27:53:99:588,0,850
19    40357683    rs759120    T    G    503.99    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.346;DB;DP=33;Dels=0.0;FS=1.475;HRun=1;HaplotypeScore=0.6651;MQ=59.43;MQ0=0;MQRankSum=-0.164;QD=15.27;ReadPosRankSum=-0.31;SNPEFF_AMINO_ACID_CHANGE=A5210;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40357377_40357760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:14,19:33:99:534,0,420
19    40357824    rs759121    G    C    72.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.05;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:3,3:6:67.52:102,0,68
19    40361112    rs3760931    G    T    102.34    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.322;QD=12.79;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:3,5:8:99:132,0,99
19    40366362    rs3855679    G    C    440.10    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.793;DB;DP=33;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=0.0;MQ=55.7;MQ0=0;MQRankSum=-0.076;QD=13.34;ReadPosRankSum=1.133;SNPEFF_AMINO_ACID_CHANGE=L4624;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40366028_40366571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:17,16:33:99:470,0,485
19    40366374    rs2053089    G    C    411.77    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.269;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.75;MQ0=0;MQRankSum=-0.439;QD=10.29;ReadPosRankSum=1.94;SNPEFF_AMINO_ACID_CHANGE=P4620;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40366028_40366571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:22,18:40:99:442,0,630
19    40368274    .    C    A    363.11    MQFilter40    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.894;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.5379;MQ=35.39;MQ0=3;MQRankSum=-3.01;QD=7.12;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:25,26:51:99:393,0,550
19    40368280    rs62106924    A    G    340.77    MQFilter40    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.957;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.3417;MQ=36.73;MQ0=3;MQRankSum=-3.275;QD=6.2;ReadPosRankSum=0.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:22,28:55:99:371,0,590
19    40368358    rs146289015    G    A    646.64    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=3.995;DB;DP=143;Dels=0.0;FS=1.592;HRun=0;HaplotypeScore=2.5802;MQ=43.57;MQ0=3;MQRankSum=3.279;QD=4.52;ReadPosRankSum=-2.311;SNPEFF_AMINO_ACID_CHANGE=A4330;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40368303_40368876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:98,43:143:99:677,0,2281
19    40368376    rs75204711    A    C    703.01    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.462;DB;DP=152;Dels=0.0;FS=4.799;HRun=0;HaplotypeScore=4.5092;MQ=41.9;MQ0=4;MQRankSum=-3.09;QD=4.63;ReadPosRankSum=0.803;SNPEFF_AMINO_ACID_CHANGE=A4324;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40368303_40368876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:114,38:152:99:733,0,2889
19    40368395    rs28472548    C    T    2684.82    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=3.46;DB;DP=153;Dels=0.0;FS=5.823;HRun=0;HaplotypeScore=0.9996;MQ=41.04;MQ0=4;MQRankSum=-3.613;QD=17.55;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=R4318H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40368303_40368876;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:40,112:153:99:2715,0,924
19    40368478    rs77170940    G    A    141.86    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=0.474;DB;DP=67;Dels=0.0;FS=32.999;HRun=2;HaplotypeScore=0.7887;MQ=45.47;MQ0=0;MQRankSum=-5.821;QD=2.12;ReadPosRankSum=-3.925;SNPEFF_AMINO_ACID_CHANGE=P4290;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40368303_40368876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:49,18:67:99:172,0,1560
19    40368498    rs12610683    A    C    1104.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.1482;MQ=47.47;MQ0=1;QD=23.0;SNPEFF_AMINO_ACID_CHANGE=S4284A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40368303_40368876;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1137,105,0
19    40368499    rs11083540    A    C    1125.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.1482;MQ=47.47;MQ0=1;QD=23.46;SNPEFF_AMINO_ACID_CHANGE=L4283;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40368303_40368876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    1/1:1,47:48:99:1159,108,0
19    40368697    rs144395743    G    A    32.26    MQFilter40;QDFilter2    AB=0.912;AC=1;AF=0.50;AN=2;BaseQRankSum=4.18;DB;DP=181;Dels=0.0;FS=23.109;HRun=0;HaplotypeScore=2.6916;MQ=33.21;MQ0=12;MQRankSum=0.452;QD=0.18;ReadPosRankSum=-0.602;SNPEFF_AMINO_ACID_CHANGE=C4217;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40368303_40368876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:165,16:181:62.25:62,0,3037
19    40368733    .    G    C    77.95    MQFilter40;QDFilter2    AB=0.908;AC=1;AF=0.50;AN=2;BaseQRankSum=2.704;DP=185;Dels=0.0;FS=29.349;HRun=0;HaplotypeScore=3.3472;MQ=38.71;MQ0=1;MQRankSum=-1.347;QD=0.42;ReadPosRankSum=2.032;SNPEFF_AMINO_ACID_CHANGE=L4205;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40368303_40368876;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:168,17:185:99:108,0,3581
19    40369993    rs7246193    G    C    40.99    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.81;MQ0=1;MQRankSum=-0.736;QD=10.25;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:2,2:4:32.73:71,0,33
19    40370016    rs7245966    C    A    102.25    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.851;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.04;MQ0=1;MQRankSum=-1.453;QD=9.3;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:6,5:11:99:132,0,173
19    40370213    rs144686927    G    A    88.93    MQFilter40;QDFilter2    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.509;DB;DP=152;Dels=0.0;FS=5.051;HRun=0;HaplotypeScore=0.0;MQ=10.85;MQ0=132;MQRankSum=0.509;QD=0.59;ReadPosRankSum=-0.694;SNPEFF_AMINO_ACID_CHANGE=D4151;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40370195_40370532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:125,27:152:99:119,0,385
19    40370273    rs146481015    C    T    372.13    MQFilter40    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.283;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.98;MQ0=142;MQRankSum=0.396;QD=2.34;ReadPosRankSum=2.774;SNPEFF_AMINO_ACID_CHANGE=V4131;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40370195_40370532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:103,55:159:54.20:402,0,54
19    40370296    rs149092429    G    C    108.44    MQFilter40;QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=139;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=8.74;MQ0=128;MQRankSum=0.717;QD=0.78;ReadPosRankSum=0.387;SNPEFF_AMINO_ACID_CHANGE=Q4124E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40370195_40370532;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:118,20:139:99:138,0,179
19    40370297    rs142203788    G    A    109.96    MQFilter40;QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=136;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=8.84;MQ0=125;MQRankSum=-0.143;QD=0.81;ReadPosRankSum=0.387;SNPEFF_AMINO_ACID_CHANGE=N4123;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40370195_40370532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:116,20:136:99:140,0,179
19    40370312    rs151225679    G    A    49.11    MQFilter40;QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.35;MQ0=119;MQRankSum=-0.573;QD=0.38;ReadPosRankSum=-1.203;SNPEFF_AMINO_ACID_CHANGE=T4118;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40370195_40370532;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:112,16:128:79.10:79,0,185
19    40374034    rs138587194    A    G    91.72    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.46;MQ0=5;MQRankSum=1.38;QD=8.34;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=V4015A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40373945_40374086;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:4,7:11:11.65:122,0,12
19    40376675    rs77872255    G    A    399.90    MQFilter40    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=164;Dels=0.0;FS=3.191;HRun=0;HaplotypeScore=1.8824;MQ=24.23;MQ0=43;MQRankSum=-0.535;QD=2.44;ReadPosRankSum=-0.474;SNPEFF_AMINO_ACID_CHANGE=A3916V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40376631_40377225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:133,31:164:99:430,0,1798
19    40382178    rs76154158    A    G    105.21    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.864;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.44;MQ0=0;MQRankSum=-1.156;QD=6.19;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:11,6:17:99:135,0,406
19    40392359    rs56242719    T    C    120.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.8202;MQ=13.17;MQ0=18;QD=4.65;SNPEFF_AMINO_ACID_CHANGE=A2715;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40392316_40392910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    1/1:0,26:26:15.02:154,15,0
19    40392482    rs62108883    A    G    524.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.51;MQ0=4;QD=21.87;SNPEFF_AMINO_ACID_CHANGE=S2674;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40392316_40392910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    1/1:0,24:24:51.12:558,51,0
19    40392585    rs79253448    T    G    145.05    HaplotypeScoreFilter13;MQFilter40    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.114;DB;DP=46;Dels=0.0;FS=1.379;HRun=0;HaplotypeScore=13.5609;MQ=34.02;MQ0=0;MQRankSum=-1.839;QD=3.15;ReadPosRankSum=1.238;SNPEFF_AMINO_ACID_CHANGE=E2640A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40392316_40392910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:34,12:46:99:175,0,1069
19    40392588    rs62108885    C    T    377.41    HaplotypeScoreFilter13;MQFilter40    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.179;DB;DP=45;Dels=0.0;FS=1.254;HRun=1;HaplotypeScore=13.5609;MQ=33.89;MQ0=1;MQRankSum=0.223;QD=8.39;ReadPosRankSum=-0.025;SNPEFF_AMINO_ACID_CHANGE=S2639N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40392316_40392910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:29,16:45:99:407,0,804
19    40392631    rs80068592    G    A    64.59    MQFilter40;QDFilter2    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.096;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.13;MQ0=9;MQRankSum=-0.833;QD=1.9;ReadPosRankSum=0.658;SNPEFF_AMINO_ACID_CHANGE=P2625S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40392316_40392910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:22,12:34:94.58:95,0,362
19    40392719    .    G    A    40.10    MQFilter40;QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=0.057;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.88;MQ0=31;MQRankSum=0.736;QD=0.84;ReadPosRankSum=-0.396;SNPEFF_AMINO_ACID_CHANGE=N2595;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40392316_40392910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:42,6:48:70.09:70,0,263
19    40395778    .    G    A    180.82    MQFilter40;QDFilter2    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=4.917;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.46;MQ0=55;MQRankSum=0.707;QD=1.97;ReadPosRankSum=0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:62,29:92:99:211,0,100
19    40399139    .    C    A    146.54    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.408;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.16;MQ0=0;MQRankSum=-1.271;QD=5.23;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:18,10:28:99:177,0,493
19    40405847    rs2011817    C    T    523.17    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=48;Dels=0.0;FS=13.545;HRun=0;HaplotypeScore=0.8667;MQ=58.97;MQ0=0;MQRankSum=-0.807;QD=10.9;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:27,21:48:99:553,0,842
19    40406019    rs2355719    G    A    496.96    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.864;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.73;MQ0=0;MQRankSum=-0.173;QD=18.41;ReadPosRankSum=-2.097;SNPEFF_AMINO_ACID_CHANGE=C1609;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40405919_40406060;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:11,16:27:99:527,0,336
19    40407728    rs28540820    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    40408146    rs56186636    G    A    361.42    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.889;DB;DP=33;Dels=0.0;FS=5.943;HRun=0;HaplotypeScore=0.0;MQ=48.75;MQ0=5;MQRankSum=1.658;QD=10.95;ReadPosRankSum=-0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:16,17:33:99:391,0,401
19    40408268    rs34938990    G    T    59.27    MQFilter40;QDFilter2    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.301;DB;DP=33;Dels=0.0;FS=5.197;HRun=1;HaplotypeScore=0.0;MQ=36.25;MQ0=6;MQRankSum=-0.26;QD=1.8;ReadPosRankSum=-1.106;SNPEFF_AMINO_ACID_CHANGE=T1524N;SNPEFF_CODON_CHANGE=aCt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40408254_40408848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:22,11:33:89.26:89,0,555
19    40408821    rs11083543    C    G    150.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=44.89;MQ0=0;MQRankSum=0.0;QD=12.55;ReadPosRankSum=0.259;SNPEFF_AMINO_ACID_CHANGE=V1340L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40408254_40408848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:6,6:12:99:181,0,137
19    40408857    rs4802064    T    C    52.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.19;MQ0=0;MQRankSum=0.406;QD=8.81;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:3,3:6:82.83:83,0,106
19    40411857    rs138387993    G    A    500.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.75;DB;DP=46;Dels=0.0;FS=2.786;HRun=0;HaplotypeScore=2.3639;MQ=46.48;MQ0=2;MQRankSum=-0.264;QD=10.89;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=D1257;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40411638_40412230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:23,23:46:99:531,0,732
19    40419558    rs12459958    A    G    592.43    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.615;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.478;QD=12.88;ReadPosRankSum=-0.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:26,20:46:99:622,0,742
19    40420087    rs12460562    G    A    205.92    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9964;MQ=59.03;MQ0=0;MQRankSum=0.375;QD=8.58;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=A969;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40419597_40420164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCGBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221347    GT:AD:DP:GQ:PL    0/1:16,8:24:99:236,0,426
19    40711333    rs892117    A    G    39.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.97;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253055    GT:AD:DP:GQ:PL    0/1:3,2:5:69.83:70,0,109
19    40719076    rs1129156    T    C    299.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.37;SNPEFF_AMINO_ACID_CHANGE=F606;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40718983_40719095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253055    GT:AD:DP:GQ:PL    1/1:0,14:14:27.07:332,27,0
19    40719237    rs59999853    G    A    40.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311308    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
19    40719410    rs3746006    C    T    223.21    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=14;Dels=0.0;FS=2.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.268;QD=15.94;ReadPosRankSum=-1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311308    GT:AD:DP:GQ:PL    0/1:3,11:14:77.96:253,0,78
19    40720079    rs3746005    C    T    260.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=D831;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40719424_40720128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253055    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:293,24,0
19    40721877    rs8106744    G    C    79.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP3K10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253055    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
19    40739513    rs33933140    A    G    356.28    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.77;DB;DP=38;Dels=0.0;FS=1.641;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=1.797;QD=9.38;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=I136T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40738870_40739596;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358335    GT:AD:DP:GQ:PL    0/1:22,16:38:99:386,0,658
19    40739721    rs2304186    G    T    104.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=10.45;ReadPosRankSum=0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311278    GT:AD:DP:GQ:PL    0/1:5,5:10:99:134,0,135
19    40742105    rs2304188    T    C    468.56    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=29;Dels=0.0;FS=5.988;HRun=1;HaplotypeScore=1.8824;MQ=59.36;MQ0=0;MQRankSum=1.462;QD=16.16;ReadPosRankSum=-0.905;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491778    GT:AD:DP:GQ:PL    0/1:12,17:29:99:499,0,342
19    40742320    rs2304189    T    C    600.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487537    GT:AD:DP:GQ:PL    1/1:0,21:21:54.12:634,54,0
19    40770982    rs3730050    T    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498350    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    40788641    rs11880261    T    C    30.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358335    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
19    40832031    rs8103643    G    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357884    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    40839664    rs8103796    A    C    50.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf47;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357884    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
19    40883844    rs45469694    A    C    456.16    PASS    AB=0.379;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.517;DB;DP=29;Dels=0.0;FS=3.78;HRun=2;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.101;QD=15.73;ReadPosRankSum=1.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291823    GT:AD:DP:GQ:PL    0/1:11,18:29:99:486,0,338
19    40884160    rs4635    G    A    648.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIPK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291823    GT:AD:DP:GQ:PL    1/1:0,28:28:63.10:681,63,0
19    40886223    rs56237517    G    A    356.01    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=32;Dels=0.0;FS=1.455;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.133;QD=11.13;ReadPosRankSum=-1.548;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356508    GT:AD:DP:GQ:PL    0/1:17,15:32:99:386,0,444
19    40900865    rs268674    C    T    705.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.08;SNPEFF_AMINO_ACID_CHANGE=G1067R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40899873_40900877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341562    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:739,57,0
19    40901011    rs3745202    G    C    662.21    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.069;DB;DP=46;Dels=0.0;FS=11.642;HRun=5;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.505;QD=14.4;ReadPosRankSum=0.471;SNPEFF_AMINO_ACID_CHANGE=P1083R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40899672_40903877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324001    GT:AD:DP:GQ:PL    0/1:19,27:46:99:692,0,563
19    40901496    rs268673    T    C    1106.93    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=81;Dels=0.0;FS=0.857;HRun=1;HaplotypeScore=0.6651;MQ=59.43;MQ0=0;MQRankSum=0.868;QD=13.67;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=I921M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40899672_40903877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324001    GT:AD:DP:GQ:PL    0/1:39,42:81:99:1137,0,1143
19    40901604    rs268672    A    G    767.81    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.763;DB;DP=64;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=54.89;MQ0=0;MQRankSum=1.622;QD=12.0;ReadPosRankSum=0.734;SNPEFF_AMINO_ACID_CHANGE=P885;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40899672_40903877;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324001    GT:AD:DP:GQ:PL    0/1:29,35:64:99:798,0,833
19    40901614    rs268671    A    G    711.77    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.322;DB;DP=59;Dels=0.0;FS=3.855;HRun=0;HaplotypeScore=0.0;MQ=53.84;MQ0=0;MQRankSum=-0.109;QD=12.06;ReadPosRankSum=1.187;SNPEFF_AMINO_ACID_CHANGE=V882A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40899672_40903877;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324001    GT:AD:DP:GQ:PL    0/1:28,31:59:99:742,0,737
19    40904602    rs744389    G    A    406.96    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.789;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=57.85;MQ0=0;MQRankSum=0.179;QD=16.96;ReadPosRankSum=-0.477;SNPEFF_AMINO_ACID_CHANGE=T102;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40899672_40904723;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291825    GT:AD:DP:GQ:PL    0/1:9,15:24:99:437,0,215
19    40929363    rs268687    T    C    278.65    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.509;QD=9.61;ReadPosRankSum=0.908;SNPEFF_AMINO_ACID_CHANGE=T31A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40927499_40929453;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERTAD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357949    GT:AD:DP:GQ:PL    0/1:17,12:29:99:309,0,576
19    40929553    rs268686    G    C    60.08    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=6.01;ReadPosRankSum=-1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERTAD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357949    GT:AD:DP:GQ:PL    0/1:6,4:10:90.07:90,0,226
19    40947373    rs10560834    GGATC    G    995.51    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=5.51;DB;DP=47;FS=0.0;HRun=0;HaplotypeScore=239.5167;IndelType=D;MQ=58.13;MQ0=0;MQRankSum=0.332;QD=20.74;ReadPosRankSum=0.053;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERTAD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322354    GT:AD:DP:GQ:PL    0/1:26,22:47:99:1035,0,1927
19    40947448    rs2887292    A    G    1141.73    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.995;DB;DP=95;Dels=0.0;FS=4.074;HRun=1;HaplotypeScore=0.8321;MQ=59.06;MQ0=0;MQRankSum=1.366;QD=12.02;ReadPosRankSum=-0.39;SNPEFF_AMINO_ACID_CHANGE=S180;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40946749_40947993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERTAD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322354    GT:AD:DP:GQ:PL    0/1:56,39:95:99:1172,0,1641
19    40947751    rs35314597    G    A    160.13    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.625;QD=9.42;ReadPosRankSum=-0.144;SNPEFF_AMINO_ACID_CHANGE=P79;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40946749_40947993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERTAD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322354    GT:AD:DP:GQ:PL    0/1:9,8:17:99:190,0,307
19    40978640    rs73931308    G    A    302.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=25.22;SNPEFF_AMINO_ACID_CHANGE=A38T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_40978514_40978697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    1/1:0,12:12:27.06:336,27,0
19    40978760    rs62106997    C    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    41007797    rs75996882    GTC    G    1590.33    PASS    AB=0.705;AC=1;AF=0.50;AN=2;BaseQRankSum=3.187;DB;DP=104;FS=2.953;HRun=0;HaplotypeScore=424.2375;IndelType=D;MQ=58.71;MQ0=1;MQRankSum=0.439;QD=15.15;ReadPosRankSum=2.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    0/1:61,44:104:99:1629,0,2758
19    41008049    rs814526    A    G    581.72    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.724;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.36;MQ0=0;MQRankSum=-0.556;QD=14.54;ReadPosRankSum=-0.051;SNPEFF_AMINO_ACID_CHANGE=V304;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41008035_41008222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    0/1:16,24:40:99:612,0,373
19    41010047    rs843779    C    G    95.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.716;DB;DP=32;Dels=0.03;FS=10.544;HRun=7;HaplotypeScore=0.9665;MQ=54.14;MQ0=0;MQRankSum=-1.787;QD=2.91;ReadPosRankSum=-0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    0/1:16,16:32:99:126,0,488
19    41012190    rs7258094    C    T    395.06    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.758;QD=10.97;ReadPosRankSum=-0.118;SNPEFF_AMINO_ACID_CHANGE=D571;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41012143_41012293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    0/1:22,14:36:99:425,0,641
19    41025243    rs814538    G    A    257.14    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=14;Dels=0.0;FS=10.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.37;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    0/1:2,12:14:14.67:287,0,15
19    41034912    rs1461008    G    A    710.33    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.654;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=59.55;MQ0=0;MQRankSum=-0.992;QD=13.93;ReadPosRankSum=-1.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344104    GT:AD:DP:GQ:PL    0/1:24,27:51:99:740,0,701
19    41038574    rs814501    G    A    222.80    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=1.624;DB;DP=37;Dels=0.0;FS=8.64;HRun=0;HaplotypeScore=1.5774;MQ=59.38;MQ0=0;MQRankSum=-0.564;QD=6.02;ReadPosRankSum=-1.351;SNPEFF_AMINO_ACID_CHANGE=G1331S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41038532_41038678;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    0/1:27,10:37:99:253,0,931
19    41040334    rs1165858    G    A    222.65    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=24.74;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    0/1:2,7:9:52.92:253,0,53
19    41062658    rs864580    C    T    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
19    41062902    rs66997196    ACC    A    475.74    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.02;DB;DP=46;FS=9.94;HRun=11;HaplotypeScore=258.2377;IndelType=D;MQ=56.92;MQ0=0;MQRankSum=-0.892;QD=10.34;ReadPosRankSum=2.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    0/1:9,20:46:85.64:515,0,86
19    41063427    rs1675401    C    T    164    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:197,15,0
19    41075662    rs1165837    G    C    622.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=28.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:655,51,0
19    41077891    rs8101070    C    T    5306.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.715;DB;DP=161;Dels=0.0;FS=2.553;HRun=0;HaplotypeScore=1.7608;MQ=59.57;MQ0=0;MQRankSum=0.589;QD=32.76;ReadPosRankSum=-0.994;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338932    GT:AD:DP:GQ:PL    1/1:4,157:161:99:5306,290,0
19    41078220    rs1165841    G    C    1813.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352632    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1847,135,0
19    41082993    rs67147114    GC    G    292.79    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.075;DB;DP=17;FS=0.0;HRun=11;HaplotypeScore=52.0032;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=-1.267;QD=17.22;ReadPosRankSum=2.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPTBN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352632    GT:AD:DP:GQ:PL    1/1:2,15:17:14.39:335,14,0
19    41089773    rs420490    C    G    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.61;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHKBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291842    GT:AD:DP:GQ:PL    0/1:2,2:4:69.92:72,0,70
19    41096189    rs396118    A    G    30.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.08;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=T323;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41096150_41096328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHKBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446701    GT:AD:DP:GQ:PL    0/1:2,3:5:60.40:60,0,70
19    41106184    rs79102501    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    41111069    rs2303729    G    A    519.79    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.423;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.549;QD=12.68;ReadPosRankSum=1.254;SNPEFF_AMINO_ACID_CHANGE=V127I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41110941_41111132;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396819    GT:AD:DP:GQ:PL    0/1:21,20:41:99:550,0,661
19    41112547    rs75217335    G    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204005    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    41116397    rs1318544    G    A    179.01    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=13.77;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204005    GT:AD:DP:GQ:PL    0/1:7,6:13:99:209,0,146
19    41117869    rs1131620    A    G    35.09    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=2.34;ReadPosRankSum=1.083;SNPEFF_AMINO_ACID_CHANGE=T240A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41117765_41117890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545697    GT:AD:DP:GQ:PL    0/1:12,3:15:65.08:65,0,402
19    41118056    rs1051303    A    G    192.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.803;DB;DP=21;Dels=0.0;FS=7.613;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=9.15;ReadPosRankSum=1.31;SNPEFF_AMINO_ACID_CHANGE=T108A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41117979_41118098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546155    GT:AD:DP:GQ:PL    0/1:12,9:21:99:222,0,386
19    41119273    rs12611045    G    C    56.10    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=6.23;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204005    GT:AD:DP:GQ:PL    0/1:4,5:9:86.09:86,0,106
19    41120083    rs2369006    A    T    174.47    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=14.54;ReadPosRankSum=0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546155    GT:AD:DP:GQ:PL    0/1:5,7:12:99:204,0,174
19    41122671    rs10403963    C    T    343.77    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.349;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.617;QD=10.42;ReadPosRankSum=-1.329;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546155    GT:AD:DP:GQ:PL    0/1:21,12:33:99:374,0,779
19    41123093    rs67216392    A    AG    1339.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=2;HaplotypeScore=85.5582;IndelType=I;MQ=59.73;MQ0=0;QD=39.39;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_41123006_41123094;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000204005    GT:AD:DP:GQ:PL    1/1:0,34:34:96.32:1381,96,0
19    41125159    rs7259237    A    G    1060.04    PASS    AB=0.403;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.084;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=-0.39;QD=14.72;ReadPosRankSum=0.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204005    GT:AD:DP:GQ:PL    0/1:29,43:72:99:1090,0,951
19    41125177    rs7259554    G    C    1652.87    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9986;MQ=60.0;MQ0=0;MQRankSum=-1.271;QD=17.97;ReadPosRankSum=2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000204005    GT:AD:DP:GQ:PL    0/1:38,54:92:99:1683,0,1150
19    41128415    rs35079932    G    A    257.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.45;MQ0=0;MQRankSum=0.177;QD=17.16;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=V1108;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41128306_41128572;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTBP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396819    GT:AD:DP:GQ:PL    0/1:6,9:15:99:287,0,150
19    41173880    rs113525110    C    T    125.91    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=55.02;MQ0=0;MQRankSum=-0.278;QD=11.45;ReadPosRankSum=-0.278;SNPEFF_AMINO_ACID_CHANGE=Q400;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41173246_41174043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUMBL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540131    GT:AD:DP:GQ:PL    0/1:4,7:11:99:156,0,137
19    41186879    rs2561545    A    G    819.06    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=3.934;DB;DP=78;Dels=0.0;FS=1.043;HRun=1;HaplotypeScore=0.5784;MQ=57.29;MQ0=0;MQRankSum=-0.156;QD=10.5;ReadPosRankSum=-1.548;SNPEFF_AMINO_ACID_CHANGE=C120;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41186822_41186962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUMBL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540131    GT:AD:DP:GQ:PL    0/1:39,38:78:99:849,0,1015
19    41188890    rs34359675    T    TGG    263.75    PASS    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=39;FS=0.0;HRun=10;HaplotypeScore=189.5734;IndelType=I;MQ=56.66;MQ0=0;MQRankSum=-2.083;QD=6.76;ReadPosRankSum=-3.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUMBL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252891    GT:AD:DP:GQ:PL    0/1:24,9:39:99:303,0,385
19    41206208    rs2246095    A    G    501.97    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.098;DB;DP=43;Dels=0.0;FS=2.704;HRun=1;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.231;QD=11.67;ReadPosRankSum=-1.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243583    GT:AD:DP:GQ:PL    0/1:22,21:43:99:532,0,680
19    41211056    rs3865452    T    C    55.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=17.482;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=6.13;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=H133R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41211001_41211086;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243583    GT:AD:DP:GQ:PL    0/1:5,4:9:85.13:85,0,174
19    41216172    rs7258157    T    C    74.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADCK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243583    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
19    41224314    rs2561530    G    A    244.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263370    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
19    41230995    rs2303723    A    G    33.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.04;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263370    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:63,0,32
19    41235038    rs10420651    C    G    230.44    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.119;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.971;QD=12.8;ReadPosRankSum=-0.442;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263370    GT:AD:DP:GQ:PL    0/1:9,9:18:99:260,0,321
19    41235120    rs10420685    A    G    458.66    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.188;DB;DP=47;Dels=0.0;FS=1.143;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=9.76;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=A423;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41235107_41235320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263370    GT:AD:DP:GQ:PL    0/1:26,21:47:99:489,0,770
19    41251180    rs2369302    T    G    61.88    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.47;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITPKC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263370    GT:AD:DP:GQ:PL    0/1:1,3:4:24.95:92,0,25
19    41255500    rs2254343    C    G    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_AMINO_ACID_CHANGE=R70P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41255386_41255828;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf54;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378313    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    41257176    rs1457141    G    C    710.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=32.29;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339153    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:743,60,0
19    41257396    rs2607418    C    T    851.32    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.494;MQ=56.1;MQ0=0;MQRankSum=1.5;QD=12.71;ReadPosRankSum=-0.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243563    GT:AD:DP:GQ:PL    0/1:32,31:67:99:881,0,903
19    41263403    rs2230694    A    G    283.08    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.521;QD=11.8;ReadPosRankSum=-0.29;SNPEFF_AMINO_ACID_CHANGE=K80;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41263237_41263409;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243563    GT:AD:DP:GQ:PL    0/1:11,13:24:99:313,0,372
19    41265201    rs736625    C    T    114.08    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.82;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243563    GT:AD:DP:GQ:PL    0/1:1,4:5:20.21:144,0,20
19    41269481    rs2249854    T    C    573.98    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.125;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.243;QD=9.57;ReadPosRankSum=1.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243563    GT:AD:DP:GQ:PL    0/1:40,20:60:99:604,0,1270
19    41269766    rs2249835    G    A    183.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243563    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:216,18,0
19    41271104    rs13108    T    C    54.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=6.02;ReadPosRankSum=0.361;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243563    GT:AD:DP:GQ:PL    0/1:5,4:9:84.13:84,0,179
19    41281346    rs2233154    C    T    836.30    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=51;Dels=0.0;FS=7.966;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=1.378;QD=16.4;ReadPosRankSum=2.081;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419646    GT:AD:DP:GQ:PL    0/1:22,29:51:99:866,0,633
19    41281700    rs2233156    C    T    505.24    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.561;DB;DP=37;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.035;QD=13.66;ReadPosRankSum=-0.035;SNPEFF_AMINO_ACID_CHANGE=P57;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41281657_41281790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB4B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263369    GT:AD:DP:GQ:PL    0/1:18,19:37:99:535,0,360
19    41283365    rs2233159    C    G    774.70    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.945;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.451;QD=12.3;ReadPosRankSum=-1.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419646    GT:AD:DP:GQ:PL    0/1:33,30:63:99:805,0,1062
19    41286163    rs2287691    C    G    200.54    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.901;DB;DP=22;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.194;QD=9.12;ReadPosRankSum=0.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263369    GT:AD:DP:GQ:PL    0/1:14,8:22:99:231,0,504
19    41289756    rs2287692    G    A    31.74    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=9;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.198;QD=3.53;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419646    GT:AD:DP:GQ:PL    0/1:6,3:9:61.73:62,0,102
19    41307170    rs2545763    G    A    427.09    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.982;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.458;QD=14.73;ReadPosRankSum=0.807;SNPEFF_AMINO_ACID_CHANGE=P231;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41306244_41307320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EGLN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303961    GT:AD:DP:GQ:PL    0/1:14,15:29:99:457,0,388
19    41324684    rs2545771    G    A    213.62    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=19;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=53.67;MQ0=0;MQRankSum=0.939;QD=11.24;ReadPosRankSum=0.939;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=CYP2F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437853    GT:AD:DP:GQ:PL    0/1:10,9:19:99:244,0,330
19    41324746    rs2545772    G    A    44.95    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.34;MQ0=0;MQRankSum=-0.778;QD=3.0;ReadPosRankSum=-0.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=CYP2F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437853    GT:AD:DP:GQ:PL    0/1:10,4:15:74.95:75,0,223
19    41332171    rs78011401    C    T    460.80    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=2.673;DB;DP=43;Dels=0.0;FS=1.399;HRun=1;HaplotypeScore=0.734;MQ=42.42;MQ0=6;MQRankSum=-0.68;QD=10.72;ReadPosRankSum=2.832;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=CYP2F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437853    GT:AD:DP:GQ:PL    0/1:20,23:43:99:491,0,403
19    41332809    rs57721385    A    G    130.89    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.796;QD=8.73;ReadPosRankSum=1.041;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=CYP2F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437853    GT:AD:DP:GQ:PL    0/1:10,5:15:99:161,0,349
19    41332832    rs73048932    A    G    141.93    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;MQRankSum=1.447;QD=14.19;ReadPosRankSum=-0.741;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=CYP2F1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437853    GT:AD:DP:GQ:PL    0/1:4,6:10:99:172,0,134
19    41349640    rs7248240    G    C    261.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=32.69;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:294,24,0
19    41349943    .    G    C    32.61    MQFilter40;QDFilter2    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.78;MQ0=2;MQRankSum=-1.225;QD=1.48;ReadPosRankSum=-1.056;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:14,8:22:62.61:63,0,312
19    41350489    rs2002975    C    G    1092.53    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.443;DB;DP=94;Dels=0.0;FS=9.36;HRun=0;HaplotypeScore=1.5362;MQ=53.06;MQ0=1;MQRankSum=-1.333;QD=11.62;ReadPosRankSum=0.994;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:46,48:94:99:1123,0,1204
19    41350509    rs2002976    G    A    1512.79    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.429;DB;DP=105;Dels=0.0;FS=6.518;HRun=0;HaplotypeScore=2.9824;MQ=53.72;MQ0=1;MQRankSum=-1.49;QD=14.41;ReadPosRankSum=-0.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:45,60:105:99:1543,0,1276
19    41350594    rs2002977    G    A    1710.89    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=0.681;DB;DP=92;Dels=0.0;FS=7.904;HRun=2;HaplotypeScore=0.8667;MQ=55.22;MQ0=0;MQRankSum=-1.073;QD=18.6;ReadPosRankSum=-1.179;SNPEFF_AMINO_ACID_CHANGE=H415;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41350536_41350677;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:35,57:92:99:1741,0,1069
19    41350664    rs1809810    A    T    2009.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.17;MQ0=1;QD=30.44;SNPEFF_AMINO_ACID_CHANGE=F392Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41350536_41350677;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2042,159,0
19    41350996    rs8192729    C    T    122.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
19    41352762    rs4079369    G    C    748.39    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.642;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5518;MQ=52.51;MQ0=2;MQRankSum=-0.487;QD=14.39;ReadPosRankSum=-0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:23,29:52:99:778,0,686
19    41352840    rs1809811    G    A    885.75    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.88;DB;DP=87;Dels=0.0;FS=1.903;HRun=0;HaplotypeScore=2.5494;MQ=48.85;MQ0=5;MQRankSum=1.847;QD=10.18;ReadPosRankSum=1.554;SNPEFF_AMINO_ACID_CHANGE=R257;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41352780_41352956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:52,35:87:99:916,0,1073
19    41353107    rs56113850    T    C    142.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=-1.268;QD=14.29;ReadPosRankSum=-0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:5,5:10:99:173,0,174
19    41354442    rs57607700    C    G    545.24    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.906;DB;DP=34;Dels=0.0;FS=3.323;HRun=0;HaplotypeScore=0.0;MQ=51.65;MQ0=0;MQRankSum=-2.268;QD=16.04;ReadPosRankSum=0.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:13,21:34:99:575,0,427
19    41354606    rs4986892    G    T    147.50    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=59;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=0.7887;MQ=55.51;MQ0=0;MQRankSum=-2.384;QD=2.5;ReadPosRankSum=0.38;SNPEFF_AMINO_ACID_CHANGE=R136;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41354519_41354668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:48,11:59:99:177,0,1600
19    41354712    rs8192725    A    G    457.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=28.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:491,39,0
19    41356188    rs56283800    C    T    1141.88    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.956;DB;DP=65;Dels=0.0;FS=0.962;HRun=1;HaplotypeScore=1.4679;MQ=59.33;MQ0=0;MQRankSum=-0.589;QD=17.57;ReadPosRankSum=0.359;SNPEFF_AMINO_ACID_CHANGE=Q48;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41356152_41356352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    0/1:29,36:65:99:1172,0,850
19    41356281    rs1137115    T    C    2207.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=36.8;SNPEFF_AMINO_ACID_CHANGE=V17;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41356152_41356352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301141    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2241,169,0
19    41381647    rs12460590    A    C    439.40    MQFilter40    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=34;Dels=0.0;FS=28.484;HRun=2;HaplotypeScore=0.5784;MQ=34.22;MQ0=1;MQRankSum=0.163;QD=12.92;ReadPosRankSum=0.597;SNPEFF_AMINO_ACID_CHANGE=V428G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41381344_41381779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:15,19:34:99:469,0,366
19    41381840    rs11083575    G    C    104.59    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.03;MQ0=5;QD=9.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:2,9:11:15.01:137,15,0
19    41381868    rs11083576    G    T    117.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.4;MQ0=0;QD=23.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:151,15,0
19    41382476    rs75152309    T    A    1163.54    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.33;DB;DP=98;Dels=0.0;FS=3.853;HRun=0;HaplotypeScore=0.9469;MQ=55.25;MQ0=0;MQRankSum=0.091;QD=11.87;ReadPosRankSum=0.699;SNPEFF_AMINO_ACID_CHANGE=K369M;SNPEFF_CODON_CHANGE=aAg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41382432_41382573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:54,44:98:99:1194,0,1580
19    41382560    rs150890087    A    T    947.47    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.635;DB;DP=64;Dels=0.0;FS=5.486;HRun=0;HaplotypeScore=0.9916;MQ=47.78;MQ0=0;MQRankSum=-0.612;QD=14.8;ReadPosRankSum=-0.007;SNPEFF_AMINO_ACID_CHANGE=F341Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41382432_41382573;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:30,34:64:99:977,0,809
19    41382645    rs3865455    G    A    343.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.95;MQ0=0;QD=15.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,22:22:33.07:376,33,0
19    41382655    rs2316210    T    G    367.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=38.44;MQ0=0;QD=20.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:1,17:18:36.07:400,36,0
19    41382665    rs3852869    G    A    398.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.87;MQ0=0;QD=20.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,19:19:36.08:431,36,0
19    41382895    rs74493998    C    T    80.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.13;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:1,3:4:18.55:110,0,19
19    41383215    rs2302986    G    C    652.25    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.205;DB;DP=50;Dels=0.0;FS=4.257;HRun=0;HaplotypeScore=0.9997;MQ=50.79;MQ0=1;MQRankSum=4.168;QD=13.05;ReadPosRankSum=-0.022;SNPEFF_AMINO_ACID_CHANGE=T296;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41383095_41383282;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:24,26:50:99:682,0,536
19    41383217    rs2302987    T    C    485.70    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.816;DB;DP=50;Dels=0.0;FS=6.222;HRun=2;HaplotypeScore=0.9997;MQ=50.79;MQ0=1;MQRankSum=-4.26;QD=9.71;ReadPosRankSum=0.126;SNPEFF_AMINO_ACID_CHANGE=T296A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41383095_41383282;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:27,22:50:99:516,0,820
19    41383344    rs2302988    T    C    840.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.34;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:874,75,0
19    41383378    rs16958956    C    A    291.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:325,27,0
19    41383421    rs113594185    G    A    105.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9494;MQ=52.01;MQ0=0;MQRankSum=-0.421;QD=13.17;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:4,4:8:99:135,0,104
19    41383517    rs34457531    G    C    41.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.24;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    41383592    rs138593323    G    T    122.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.94;MQ0=0;MQRankSum=-2.45;QD=12.22;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:5,5:10:99:152,0,174
19    41383799    rs3869579    G    A    692.15    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=59;Dels=0.0;FS=2.282;HRun=0;HaplotypeScore=1.849;MQ=49.65;MQ0=0;MQRankSum=2.092;QD=11.73;ReadPosRankSum=0.936;SNPEFF_AMINO_ACID_CHANGE=R260C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41383757_41383898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:32,27:59:99:722,0,885
19    41384084    rs2909906    T    C    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=25.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
19    41384533    rs113986398    G    A    77.01    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.67;MQ0=1;MQRankSum=-0.72;QD=11.0;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:2,5:7:25.76:107,0,26
19    41384578    rs4453619    G    C    214.28    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.165;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.94;MQ0=1;MQRankSum=-1.01;QD=11.28;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:9,10:19:99:244,0,233
19    41384637    rs4079367    C    T    326.31    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.131;DB;DP=34;Dels=0.0;FS=1.741;HRun=0;HaplotypeScore=0.0;MQ=51.05;MQ0=0;MQRankSum=2.058;QD=9.6;ReadPosRankSum=-0.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:20,14:34:99:356,0,553
19    41384675    rs4079366    T    C    1214.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.63;MQ0=0;QD=31.15;SNPEFF_AMINO_ACID_CHANGE=H223R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41384665_41384841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1248,105,0
19    41384702    rs117539170    T    C    226.85    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=34;Dels=0.0;FS=3.393;HRun=2;HaplotypeScore=0.0;MQ=45.92;MQ0=1;MQRankSum=-1.111;QD=6.67;ReadPosRankSum=-1.032;SNPEFF_AMINO_ACID_CHANGE=Q214R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41384665_41384841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:22,12:34:99:257,0,625
19    41384781    rs112946838    T    G    89.41    MQFilter40    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=3.275;DB;DP=30;Dels=0.0;FS=16.561;HRun=0;HaplotypeScore=0.8321;MQ=37.52;MQ0=2;MQRankSum=-0.7;QD=2.98;ReadPosRankSum=1.148;SNPEFF_AMINO_ACID_CHANGE=K188Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41384665_41384841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:22,8:30:99:119,0,661
19    41385800    rs12975382    T    G    58.92    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=14.73;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:1,3:4:27.98:89,0,28
19    41385834    rs12973598    C    G    137.40    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=22.9;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:167,0,22
19    41386136    rs4142867    A    C    801.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.684;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=53.73;MQ0=2;MQRankSum=-1.498;QD=10.01;ReadPosRankSum=0.545;SNPEFF_AMINO_ACID_CHANGE=D118E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41385989_41386149;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:50,30:80:99:831,0,1423
19    41386209    rs3815704    A    G    380.39    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.541;DB;DP=37;Dels=0.0;FS=1.742;HRun=0;HaplotypeScore=0.9933;MQ=53.08;MQ0=0;MQRankSum=-3.047;QD=10.28;ReadPosRankSum=-0.325;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:22,15:37:99:410,0,782
19    41386420    rs56081734    A    C    338.12    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=2.245;DB;DP=59;Dels=0.0;FS=2.725;HRun=1;HaplotypeScore=0.9159;MQ=55.09;MQ0=1;MQRankSum=-2.762;QD=5.73;ReadPosRankSum=0.944;SNPEFF_AMINO_ACID_CHANGE=S102A;SNPEFF_CODON_CHANGE=Tcg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41386384_41386533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:41,18:59:99:368,0,1160
19    41386544    rs71337574    C    G    70.11    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.79;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.39;MQ0=0;MQRankSum=-0.922;QD=4.38;ReadPosRankSum=-1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:10,6:16:99:100,0,337
19    41386547    rs74219554    G    C    54.29    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.719;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.35;MQ0=0;MQRankSum=-1.926;QD=3.39;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:11,5:16:84.29:84,0,371
19    41386584    rs3815714    G    T    68.03    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.56;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:6,3:9:98.02:98,0,207
19    41386622    rs61482096    C    T    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
19    41387306    rs10424691    C    G    32.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=-1.231;QD=6.41;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    0/1:2,3:5:62.04:62,0,67
19    41387620    rs10425150    A    G    94.97    MQFilter40    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.346;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=36.37;MQ0=3;MQRankSum=-2.74;QD=3.65;ReadPosRankSum=0.283;SNPEFF_AMINO_ACID_CHANGE=L73;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41387494_41387656;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301146    GT:AD:DP:GQ:PL    0/1:15,11:26:99:125,0,421
19    41387647    rs10425169    A    G    148.83    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.465;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.03;MQ0=1;MQRankSum=-3.148;QD=5.72;ReadPosRankSum=-1.013;SNPEFF_AMINO_ACID_CHANGE=C64R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41387494_41387656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301146    GT:AD:DP:GQ:PL    0/1:14,12:26:99:179,0,423
19    41387656    rs10425176    A    T    180.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.246;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.0;MQ0=1;MQRankSum=-3.627;QD=8.21;ReadPosRankSum=-1.584;SNPEFF_AMINO_ACID_CHANGE=F61I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41387494_41387656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301146    GT:AD:DP:GQ:PL    0/1:11,11:22:99:211,0,336
19    41387669    rs10425185    A    G    531.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.51;MQ0=1;QD=27.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291764    GT:AD:DP:GQ:PL    1/1:0,19:19:48.10:564,48,0
19    41403982    rs11083583    G    GT    777.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=4;HaplotypeScore=47.4096;IndelType=I;MQ=61.07;MQ0=0;QD=38.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252909    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:820,60,0
19    41404196    rs10419393    A    G    838.02    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.778;DB;DP=55;Dels=0.0;FS=2.345;HRun=2;HaplotypeScore=2.4258;MQ=55.44;MQ0=0;MQRankSum=-0.402;QD=15.24;ReadPosRankSum=1.367;SNPEFF_AMINO_ACID_CHANGE=Q51R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41404043_41404230;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252909    GT:AD:DP:GQ:PL    0/1:25,30:55:99:868,0,812
19    41405962    rs4803400    T    G    721.77    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DB;DP=63;Dels=0.0;FS=0.988;HRun=1;HaplotypeScore=2.1968;MQ=58.97;MQ0=0;MQRankSum=1.054;QD=11.46;ReadPosRankSum=0.663;SNPEFF_AMINO_ACID_CHANGE=C138G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41405879_41406413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252909    GT:AD:DP:GQ:PL    0/1:37,26:63:99:752,0,1204
19    41415112    rs3844442    T    A    393.43    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.823;DB;DP=43;Dels=0.0;FS=2.926;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.245;QD=9.15;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412510    GT:AD:DP:GQ:PL    0/1:29,14:43:99:423,0,938
19    41416072    rs3892666    G    C    61.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412510    GT:AD:DP:GQ:PL    0/1:2,3:5:69.84:92,0,70
19    41416750    rs10419589    T    C    70.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=17.64;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=E2G;SNPEFF_CODON_CHANGE=gAa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41416746_41416754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412510    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:101,0,27
19    41444738    rs4803407    G    A    343.13    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.523;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.215;QD=14.3;ReadPosRankSum=-1.446;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541697    GT:AD:DP:GQ:PL    0/1:13,11:24:99:373,0,417
19    41448205    rs8110485    A    G    264.26    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.304;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.58;MQ0=0;MQRankSum=-1.064;QD=13.21;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541697    GT:AD:DP:GQ:PL    0/1:9,11:20:99:294,0,307
19    41450934    rs55811526    G    T    183.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=22.92;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008537.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541697    GT:AD:DP:GQ:PL    0/1:2,6:8:61.21:213,0,61
19    41512841    rs3745274    G    T    1428.90    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.011;DB;DP=89;Dels=0.0;FS=5.613;HRun=1;HaplotypeScore=2.8908;MQ=59.22;MQ0=0;MQRankSum=-0.9;QD=16.06;ReadPosRankSum=-1.66;SNPEFF_AMINO_ACID_CHANGE=Q172H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41512810_41512970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2B6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324071    GT:AD:DP:GQ:PL    0/1:40,49:89:99:1459,0,1280
19    41515018    .    G    A    40.69    MQFilter40;QDFilter2    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.272;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.62;MQ0=8;MQRankSum=-0.658;QD=1.51;ReadPosRankSum=0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2B6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324071    GT:AD:DP:GQ:PL    0/1:19,8:27:70.69:71,0,185
19    41515483    rs2279344    G    A    39.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2B6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324071    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
19    41518078    rs7246456    C    T    184.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=20.52;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2B6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324071    GT:AD:DP:GQ:PL    0/1:3,6:9:76.84:215,0,77
19    41518773    rs8192719    C    T    1550.20    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.247;DB;DP=119;Dels=0.0;FS=3.56;HRun=0;HaplotypeScore=5.9641;MQ=58.94;MQ0=0;MQRankSum=-1.179;QD=13.03;ReadPosRankSum=-1.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2B6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324071    GT:AD:DP:GQ:PL    0/1:66,52:119:99:1580,0,2158
19    41522715    rs3211371    C    T    219.59    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=8.921;HRun=0;HaplotypeScore=0.7887;MQ=52.78;MQ0=0;MQRankSum=-1.381;QD=16.89;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=R287C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41522551_41523278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2B6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330446    GT:AD:DP:GQ:PL    0/1:5,8:13:99:250,0,116
19    41531368    rs11666982    T    G    164.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301171    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:197,15,0
19    41531487    rs11670798    A    G    294.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.218;DB;DP=33;Dels=0.0;FS=1.585;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.244;QD=8.93;ReadPosRankSum=0.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301171    GT:AD:DP:GQ:PL    0/1:18,15:33:99:325,0,528
19    41531522    rs11670865    G    T    431.37    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.93;DB;DP=37;Dels=0.0;FS=7.125;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.38;QD=11.66;ReadPosRankSum=-1.322;SNPEFF_AMINO_ACID_CHANGE=P207T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41531508_41531570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301171    GT:AD:DP:GQ:PL    0/1:18,19:37:99:461,0,562
19    41531656    rs7249735    A    C    400    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.363;DB;DP=34;Dels=0.0;FS=3.467;HRun=0;HaplotypeScore=1.5661;MQ=58.63;MQ0=0;MQRankSum=0.017;QD=11.76;ReadPosRankSum=0.88;SNPEFF_AMINO_ACID_CHANGE=Y163D;SNPEFF_CODON_CHANGE=Tat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41531573_41531666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301171    GT:AD:DP:GQ:PL    0/1:18,16:34:99:430,0,549
19    41531705    rs3745275    G    A    120.41    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.817;QD=9.26;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301171    GT:AD:DP:GQ:PL    0/1:8,5:13:99:150,0,291
19    41531825    rs3745276    A    G    33.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.29;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301171    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:63,0,71
19    41532005    rs434606    G    A    103.24    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.412;QD=6.45;ReadPosRankSum=0.53;SNPEFF_AMINO_ACID_CHANGE=T130I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41531965_41532062;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301171    GT:AD:DP:GQ:PL    0/1:10,6:16:99:133,0,293
19    41533181    rs75025271    A    G    43.48    QDFilter2    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=27;Dels=0.0;FS=5.798;HRun=2;HaplotypeScore=0.0;MQ=51.8;MQ0=0;MQRankSum=-2.523;QD=1.61;ReadPosRankSum=-0.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301171    GT:AD:DP:GQ:PL    0/1:22,5:27:73.47:73,0,685
19    41596133    rs1645690    A    G    439.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.456;DB;DP=30;Dels=0.0;FS=1.623;HRun=3;HaplotypeScore=0.0;MQ=55.37;MQ0=0;MQRankSum=0.074;QD=14.63;ReadPosRankSum=-3.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330436    GT:AD:DP:GQ:PL    0/1:12,18:30:99:469,0,286
19    41596587    rs8192786    T    C    258.82    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=47.38;MQ0=0;MQRankSum=-2.133;QD=18.49;ReadPosRankSum=-1.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330436    GT:AD:DP:GQ:PL    0/1:5,9:14:99:289,0,151
19    41599323    rs17713907    A    G    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330436    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
19    41600706    rs9917112    A    C    58.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=5.85;ReadPosRankSum=-2.383;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330436    GT:AD:DP:GQ:PL    0/1:6,4:10:88.52:89,0,211
19    41600800    rs1709081    C    T    891.61    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.577;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=60.0;MQ0=0;MQRankSum=0.245;QD=12.38;ReadPosRankSum=-0.503;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330436    GT:AD:DP:GQ:PL    0/1:34,38:72:99:922,0,1055
19    41601609    rs1709082    T    G    299.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.995;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=58.33;MQ0=0;MQRankSum=0.704;QD=10.7;ReadPosRankSum=-2.499;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330436    GT:AD:DP:GQ:PL    0/1:14,14:28:99:330,0,430
19    41601896    rs1709083    C    G    252.20    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=3.421;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9933;MQ=58.78;MQ0=0;MQRankSum=0.222;QD=13.27;ReadPosRankSum=0.933;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2A13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330436    GT:AD:DP:GQ:PL    0/1:9,10:19:99:282,0,207
19    41622107    rs11399890    G    GC    2045.41    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.069;DB;DP=114;FS=2.247;HRun=1;HaplotypeScore=429.3554;IndelType=I;MQ=59.87;MQ0=0;MQRankSum=0.984;QD=17.94;ReadPosRankSum=-0.212;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_41622083_41622264;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2F1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000331105    GT:AD:DP:GQ:PL    0/1:60,54:114:99:2084,0,1851
19    41622189    rs305968    G    A    6897.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6163;MQ=59.47;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=P32;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41622083_41622264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331105    GT:AD:DP:GQ:PL    1/1:0,200:200:99:6898,515,0
19    41626438    rs34650210    CT    C    182.34    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.73;DB;DP=40;FS=11.832;HRun=12;HaplotypeScore=149.4174;IndelType=D;MQ=58.64;MQ0=0;MQRankSum=-0.747;QD=4.56;ReadPosRankSum=0.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331105    GT:AD:DP:GQ:PL    0/1:25,15:40:99:221,0,467
19    41627548    rs191940398    G    A    85.93    MQFilter40;QDFilter2    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=38.05;MQ0=4;MQRankSum=0.232;QD=1.53;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331105    GT:AD:DP:GQ:PL    0/1:34,22:56:99:116,0,707
19    41627868    rs80319612    G    A    908.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.41;MQ0=0;QD=26.73;SNPEFF_AMINO_ACID_CHANGE=D218N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41627862_41628038;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331105    GT:AD:DP:GQ:PL    1/1:0,34:34:75.20:942,75,0
19    41628677    rs305975    T    G    362.22    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=1.184;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=59.01;MQ0=0;MQRankSum=-0.921;QD=19.06;ReadPosRankSum=0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331105    GT:AD:DP:GQ:PL    0/1:6,13:19:99:392,0,151
19    41631415    rs137939255    C    A    238.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.61;MQ0=50;QD=3.98;SNPEFF_AMINO_ACID_CHANGE=T390;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41631398_41631539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2F1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331105    GT:AD:DP:GQ:PL    1/1:30,30:60:24.06:272,24,0
19    41633980    rs7246981    C    T    211.03    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.5;MQ0=0;MQRankSum=-1.324;QD=12.41;ReadPosRankSum=-0.556;SNPEFF_AMINO_ACID_CHANGE=P490L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41633806_41634159;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CYP2F1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331105    GT:AD:DP:GQ:PL    0/1:7,9:16:99:241,0,206
19    41700343    rs338600    C    T    415.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:448,36,0
19    41700493    rs338599    G    C    914.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_AMINO_ACID_CHANGE=P74;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41700449_41700614;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    1/1:0,28:28:69.23:947,69,0
19    41703604    rs67239006    C    CA    152.63    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=1.684;DB;DP=19;FS=6.864;HRun=11;HaplotypeScore=78.9725;IndelType=I;MQ=56.86;MQ0=0;MQRankSum=-0.722;QD=8.03;ReadPosRankSum=-0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    0/1:10,9:19:99:192,0,158
19    41703660    rs338594    T    C    413.43    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.456;DB;DP=34;Dels=0.0;FS=1.427;HRun=0;HaplotypeScore=0.7887;MQ=58.26;MQ0=0;MQRankSum=-1.343;QD=12.16;ReadPosRankSum=0.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    0/1:14,20:34:99:443,0,383
19    41703955    rs184623    A    G    39.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.19;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
19    41704304    rs338593    T    C    353.14    PASS    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.154;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=0.63;QD=8.61;ReadPosRankSum=-0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    0/1:28,13:41:99:383,0,880
19    41704832    rs338592    A    G    572.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    1/1:0,16:16:48.11:605,48,0
19    41707094    rs1628289    A    G    227.97    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.832;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9986;MQ=59.32;MQ0=0;MQRankSum=-0.332;QD=6.71;ReadPosRankSum=0.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    0/1:20,14:34:99:258,0,682
19    41711755    rs338586    G    T    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    41711815    rs338585    G    A    292.13    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.344;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.495;QD=20.87;ReadPosRankSum=0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    0/1:4,10:14:99:322,0,125
19    41712113    rs338584    C    G    98.80    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.669;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.14;QD=5.49;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    0/1:12,6:18:99:129,0,428
19    41712424    rs338583    A    G    678.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.479;DB;DP=60;Dels=0.0;FS=3.874;HRun=2;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.72;QD=11.3;ReadPosRankSum=-1.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301173    GT:AD:DP:GQ:PL    0/1:30,30:60:99:708,0,998
19    41743861    rs7249222    A    G    1423.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.35;SNPEFF_AMINO_ACID_CHANGE=N266D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41743849_41744059;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AXL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301178    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1456,111,0
19    41811730    rs12745    T    C    1187.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=11.1942;MQ=56.05;MQ0=0;QD=28.97;SNPEFF_AMINO_ACID_CHANGE=C114R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41811581_41811772;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNRNPUL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270069    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1221,105,0
19    41838206    rs8179181    G    A    64.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=10.82;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221930    GT:AD:DP:GQ:PL    0/1:3,3:6:94.94:95,0,106
19    41854035    rs11347492    CA    C    91.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=15;HaplotypeScore=115.1626;IndelType=D;MQ=54.94;MQ0=0;QD=7.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221930    GT:AD:DP:GQ:PL    1/1:1,11:12:20.53:134,21,0
19    41863777    rs11668109    A    C    1215.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.3649;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B9D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243578    GT:AD:DP:GQ:PL    1/1:0,35:35:96.30:1248,96,0
19    41863994    rs73931466    A    G    168.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.78;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.524;QD=12.05;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B9D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243578    GT:AD:DP:GQ:PL    0/1:7,7:14:99:199,0,253
19    41869392    rs2241714    T    C    1165.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_AMINO_ACID_CHANGE=I11M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41869337_41869428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B9D2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243578    GT:AD:DP:GQ:PL    1/1:0,35:35:93.27:1199,93,0
19    41869468    rs2241713    G    C    39.87    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.77;MQ0=0;MQRankSum=-0.311;QD=2.85;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B9D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243578    GT:AD:DP:GQ:PL    0/1:11,3:14:69.87:70,0,366
19    41869487    rs3217387    C    CA    533.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=1;HaplotypeScore=31.4497;IndelType=I;MQ=58.98;MQ0=0;QD=44.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B9D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243578    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:576,36,0
19    41888506    rs3745292    A    G    64.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.74;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221233    GT:AD:DP:GQ:PL    0/1:3,3:6:94.44:94,0,107
19    41889423    rs11880674    A    T    67.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=13.54;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221233    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:98,0,65
19    41889429    rs7259900    A    T    62.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.9983;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=12.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221233    GT:AD:DP:GQ:PL    0/1:2,3:5:66.19:92,0,66
19    41889748    rs12602    T    C    162.62    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=19;Dels=0.0;FS=1.871;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=8.56;ReadPosRankSum=-0.124;SNPEFF_AMINO_ACID_CHANGE=A163;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41889620_41889985;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM91;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000392002    GT:AD:DP:GQ:PL    0/1:11,8:19:99:193,0,294
19    41897674    rs878082    G    A    384.91    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.831;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=10.69;ReadPosRankSum=-0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-435M10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540732    GT:AD:DP:GQ:PL    0/1:20,16:36:99:415,0,583
19    41897688    rs878083    G    A    399.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=35;Dels=0.0;FS=1.32;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.117;QD=11.43;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-435M10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540732    GT:AD:DP:GQ:PL    0/1:20,15:35:99:430,0,519
19    41903220    rs10853751    G    A    1248.25    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=92;Dels=0.0;FS=1.894;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=13.57;ReadPosRankSum=0.833;SNPEFF_AMINO_ACID_CHANGE=T5M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41903086_41903256;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOSC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221233    GT:AD:DP:GQ:PL    0/1:48,43:92:99:1278,0,1393
19    41903421    rs12983789    A    T    171.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=3.979;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.866;QD=17.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-435M10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540732    GT:AD:DP:GQ:PL    0/1:4,6:10:99:202,0,132
19    41903671    rs892044    A    G    199.08    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=15;Dels=0.0;FS=2.246;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.678;QD=13.27;ReadPosRankSum=1.447;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_41903365_41903840;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269980    GT:AD:DP:GQ:PL    0/1:8,7:15:99:229,0,222
19    41903675    rs892043    A    G    498.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTC-435M10.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540732    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:531,42,0
19    41919944    rs3213861    A    C    490.76    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.78;DB;DP=37;Dels=0.0;FS=5.041;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.137;QD=13.26;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269980    GT:AD:DP:GQ:PL    0/1:19,18:37:99:521,0,572
19    41928336    rs284651    T    C    319.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.504;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4538;MQ=58.84;MQ0=0;MQRankSum=0.579;QD=15.96;ReadPosRankSum=-1.582;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321702    GT:AD:DP:GQ:PL    0/1:8,12:20:99:349,0,217
19    41928652    rs284652    C    T    318.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.534;DB;DP=28;Dels=0.0;FS=3.785;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.859;QD=11.38;ReadPosRankSum=-0.116;SNPEFF_AMINO_ACID_CHANGE=F295;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41928534_41928675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542943    GT:AD:DP:GQ:PL    0/1:16,12:28:99:349,0,544
19    41928701    rs284653    C    T    201.79    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=19;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.367;QD=10.62;ReadPosRankSum=0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321702    GT:AD:DP:GQ:PL    0/1:10,9:19:99:232,0,324
19    41928724    rs284654    G    A    250.81    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=19.29;ReadPosRankSum=1.468;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321702    GT:AD:DP:GQ:PL    0/1:4,9:13:99:281,0,122
19    41928765    rs284655    C    T    191.82    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=2.73;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.58;QD=19.18;ReadPosRankSum=-0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321702    GT:AD:DP:GQ:PL    0/1:3,7:10:83.35:222,0,83
19    41930396    rs4674    A    G    835.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.888;DB;DP=63;Dels=0.0;FS=3.764;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.28;QD=13.26;ReadPosRankSum=-0.751;SNPEFF_AMINO_ACID_CHANGE=L407;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41930343_41930910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269980    GT:AD:DP:GQ:PL    0/1:31,31:63:99:865,0,758
19    41932084    rs284660    G    T    638.78    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=46;Dels=0.0;FS=1.164;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=0.044;QD=13.89;ReadPosRankSum=2.514;SNPEFF_AMINO_ACID_CHANGE=A200;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41931265_41932715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321702    GT:AD:DP:GQ:PL    0/1:25,21:46:99:669,0,645
19    41932120    rs284661    C    T    931.86    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.979;DB;DP=56;Dels=0.0;FS=2.481;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.671;QD=16.64;ReadPosRankSum=-1.598;SNPEFF_AMINO_ACID_CHANGE=V188;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41931265_41932715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321702    GT:AD:DP:GQ:PL    0/1:24,32:56:99:962,0,773
19    41932275    rs284662    T    C    708.07    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.077;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;MQRankSum=0.85;QD=14.75;ReadPosRankSum=-0.549;SNPEFF_AMINO_ACID_CHANGE=S137G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41931265_41932715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321702    GT:AD:DP:GQ:PL    0/1:20,28:48:99:738,0,595
19    41932612    rs284663    C    T    63.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.55;QD=7.91;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=E24;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41931265_41932715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GNT8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321702    GT:AD:DP:GQ:PL    0/1:4,4:8:93.27:93,0,95
19    41937095    rs17318596    G    A    1442.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5362;MQ=60.0;MQ0=0;MQRankSum=-0.509;QD=13.87;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=A353T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41936961_41937250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378196    GT:AD:DP:GQ:PL    0/1:52,52:104:99:1473,0,1527
19    41939297    rs1043413    C    G    405.20    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=40;Dels=0.0;FS=1.373;HRun=2;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=0.776;QD=10.13;ReadPosRankSum=0.121;SNPEFF_AMINO_ACID_CHANGE=C132S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41939177_41939339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5SL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438807    GT:AD:DP:GQ:PL    0/1:21,19:40:99:435,0,566
19    41939835    rs55986560    C    T    32.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCKDHA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378196    GT:AD:DP:GQ:PL    1/1:0,2:2:6:63,6,0
19    41944237    rs2231940    T    C    496.45    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.252;DB;DP=47;Dels=0.0;FS=1.687;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.654;QD=10.56;ReadPosRankSum=0.166;SNPEFF_AMINO_ACID_CHANGE=N110S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41944123_41944319;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5SL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507129    GT:AD:DP:GQ:PL    0/1:27,20:47:99:526,0,823
19    41945837    rs13346603    T    A    347.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.796;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.328;QD=19.29;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5SL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507129    GT:AD:DP:GQ:PL    0/1:6,12:18:99:377,0,182
19    41945848    rs13344547    G    T    261.43    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=18.67;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5SL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507129    GT:AD:DP:GQ:PL    0/1:5,9:14:99:291,0,154
19    41945904    rs13344563    G    C    64.63    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=12.93;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5SL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507129    GT:AD:DP:GQ:PL    0/1:1,4:5:14.66:95,0,15
19    41949474    rs10415806    G    T    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5SL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507129    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    41949870    rs3745286    T    C    212.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_AMINO_ACID_CHANGE=E25G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_41949844_41949937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP5SL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000507129    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
19    42083849    rs714106    C    A    1359.86    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.706;DB;DP=114;Dels=0.0;FS=5.953;HRun=1;HaplotypeScore=1.7338;MQ=59.67;MQ0=0;MQRankSum=0.273;QD=11.93;ReadPosRankSum=-1.62;SNPEFF_AMINO_ACID_CHANGE=T121N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42083552_42083911;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CEACAM21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000187608    GT:AD:DP:GQ:PL    0/1:61,53:114:99:1390,0,1912
19    42084182    rs723902    G    C    168.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=18.76;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CEACAM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187608    GT:AD:DP:GQ:PL    0/1:3,6:9:88.71:199,0,89
19    42085873    rs2302188    A    G    499.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.701;DB;DP=38;Dels=0.0;FS=8.209;HRun=0;HaplotypeScore=2.9162;MQ=59.39;MQ0=0;MQRankSum=-0.409;QD=13.15;ReadPosRankSum=0.117;SNPEFF_AMINO_ACID_CHANGE=M198V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42085706_42085981;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CEACAM21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000187608    GT:AD:DP:GQ:PL    0/1:19,19:38:99:530,0,556
19    42092815    rs3745936    T    A    966.87    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.214;DB;DP=64;Dels=0.0;FS=1.011;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=0.685;QD=15.11;ReadPosRankSum=-1.21;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CEACAM21;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000187608    GT:AD:DP:GQ:PL    0/1:28,36:64:99:997,0,897
19    42093112    rs2005606    C    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CEACAM21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401445    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    42125660    rs1041994    T    C    1218.27    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.619;DB;DP=90;Dels=0.0;FS=0.939;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.716;QD=13.54;ReadPosRankSum=-0.594;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221954    GT:AD:DP:GQ:PL    0/1:42,48:90:99:1248,0,1299
19    42127025    rs118165977    G    A    669.79    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.366;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.108;QD=17.63;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472081    GT:AD:DP:GQ:PL    0/1:16,22:38:99:700,0,521
19    42132314    rs1126454    G    C    546.83    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=63;Dels=0.0;FS=1.172;HRun=2;HaplotypeScore=2.7853;MQ=58.89;MQ0=0;MQRankSum=1.727;QD=8.68;ReadPosRankSum=0.629;SNPEFF_AMINO_ACID_CHANGE=H29D;SNPEFF_CODON_CHANGE=Cac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42131975_42132334;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221954    GT:AD:DP:GQ:PL    0/1:39,24:63:99:577,0,1061
19    42187491    rs4426458    A    G    233.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006724    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:267,21,0
19    42188032    rs34670266    GC    G    1788.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.0;HRun=5;HaplotypeScore=161.0723;IndelType=D;MQ=60.61;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006724    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1830,162,0
19    42190859    rs8102488    A    T    3339.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_AMINO_ACID_CHANGE=F120I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42190790_42191152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000006724    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3339,256,0
19    42191261    rs113455826    A    AGT    660.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=145.5821;IndelType=I;MQ=55.49;MQ0=0;QD=27.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006724    GT:AD:DP:GQ:PL    1/1:8,12:24:51.13:703,51,0
19    42191297    rs10407280    A    T    311.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=22.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006724    GT:AD:DP:GQ:PL    1/1:0,14:14:27.07:344,27,0
19    42213408    rs59654817    G    A    77.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=54.82;MQ0=0;MQRankSum=1.231;QD=15.57;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221992    GT:AD:DP:GQ:PL    0/1:2,3:5:48.93:108,0,49
19    42213456    rs5828121    GAC    G    242.02    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=82.1312;IndelType=D;MQ=58.43;MQ0=0;MQRankSum=-0.071;QD=15.13;ReadPosRankSum=-1.202;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221992    GT:AD:DP:GQ:PL    0/1:6,9:16:99:281,0,144
19    42213744    rs10402825    T    C    1263.70    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.35;DB;DP=106;Dels=0.0;FS=6.74;HRun=0;HaplotypeScore=4.2861;MQ=50.5;MQ0=2;MQRankSum=-6.063;QD=11.92;ReadPosRankSum=-0.493;SNPEFF_AMINO_ACID_CHANGE=G70;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42213599_42213958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221992    GT:AD:DP:GQ:PL    0/1:50,55:106:99:1294,0,1311
19    42213772    rs12971352    A    G    1347.28    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.553;DB;DP=120;Dels=0.0;FS=7.336;HRun=0;HaplotypeScore=1.4942;MQ=50.16;MQ0=2;MQRankSum=-6.942;QD=11.23;ReadPosRankSum=0.03;SNPEFF_AMINO_ACID_CHANGE=I80V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42213599_42213958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221992    GT:AD:DP:GQ:PL    0/1:59,61:120:99:1377,0,1727
19    42213782    rs28683503    T    C    1327.25    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=4.599;DB;DP=117;Dels=0.0;FS=4.692;HRun=0;HaplotypeScore=2.9667;MQ=49.41;MQ0=2;MQRankSum=-7.74;QD=11.34;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=V83A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42213599_42213958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221992    GT:AD:DP:GQ:PL    0/1:59,57:117:99:1357,0,1736
19    42213868    rs34155934    A    G    1668.13    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.348;DB;DP=170;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.22;MQ0=5;MQRankSum=-8.465;QD=9.81;ReadPosRankSum=-1.03;SNPEFF_AMINO_ACID_CHANGE=I112V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42213599_42213958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221992    GT:AD:DP:GQ:PL    0/1:90,80:170:99:1698,0,2880
19    42213872    rs35091611    T    C    1902.93    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.299;DB;DP=181;Dels=0.0;FS=0.577;HRun=2;HaplotypeScore=0.5784;MQ=51.68;MQ0=5;MQRankSum=-7.413;QD=10.51;ReadPosRankSum=-1.059;SNPEFF_AMINO_ACID_CHANGE=I113T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42213599_42213958;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221992    GT:AD:DP:GQ:PL    0/1:95,86:181:99:1933,0,3019
19    42221607    rs7249230    A    G    3905.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.393;DB;DP=122;Dels=0.0;FS=6.507;HRun=0;HaplotypeScore=1.3123;MQ=59.81;MQ0=0;MQRankSum=-0.212;QD=32.01;ReadPosRankSum=-0.554;SNPEFF_AMINO_ACID_CHANGE=K116E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42221604_42221652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378181    GT:AD:DP:GQ:PL    1/1:2,120:122:99:3906,241,0
19    42265866    rs28547939    C    G    2146.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000199764    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2180,163,0
19    42265889    rs11548735    G    T    2450.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.7;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=G239V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42265877_42266131;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000199764    GT:AD:DP:GQ:PL    1/1:1,76:77:99:2483,190,0
19    42310919    rs1811564    A    G    73.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=36.68;MQ0=1;QD=18.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221999    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:105,9,0
19    42311060    rs5828129    A    AAAG    5005.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.547;DB;DP=78;FS=0.0;HRun=0;HaplotypeScore=215.5847;IndelType=I;MQ=53.41;MQ0=0;MQRankSum=0.485;QD=64.17;ReadPosRankSum=-1.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221999    GT:AD:DP:GQ:PL    1/1:8,68:78:99:5005,175,0
19    42313803    rs3795022    T    C    687.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221999    GT:AD:DP:GQ:PL    1/1:0,19:19:57.15:720,57,0
19    42313921    rs734107    G    T    3117.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=59.62;MQ0=0;QD=28.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221999    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3151,259,0
19    42314203    rs734109    C    T    704.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221999    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:738,54,0
19    42315281    rs899662    G    T    1046.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389667    GT:AD:DP:GQ:PL    1/1:0,33:33:81.26:1080,81,0
19    42315300    rs2008808    G    T    834.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389667    GT:AD:DP:GQ:PL    1/1:0,28:28:66.19:868,66,0
19    42315406    rs2008798    A    G    203.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389667    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
19    42341858    rs10404939    A    G    59.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330743    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:91,9,0
19    42342319    rs2290695    A    G    1134.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8808;MQ=58.83;MQ0=0;QD=31.51;SNPEFF_AMINO_ACID_CHANGE=V41;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42342009_42342335;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343055    GT:AD:DP:GQ:PL    1/1:0,35:36:90.28:1167,90,0
19    42342822    rs7252877    T    A    79.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330743    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:112,9,0
19    42342886    .    G    A    1087.76    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.078;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.59;MQ0=0;MQRankSum=-0.505;QD=19.42;ReadPosRankSum=1.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330743    GT:AD:DP:GQ:PL    0/1:24,32:56:99:1118,0,749
19    42342923    rs10414356    T    A    2930.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.49;MQ0=0;QD=32.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330743    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2963,226,0
19    42343155    rs4130852    G    T    2241.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330743    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2275,178,0
19    42343526    rs3922888    G    T    434.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330743    GT:AD:DP:GQ:PL    1/1:0,12:12:36.09:468,36,0
19    42354629    rs2305809    T    C    1375.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.26;MQ0=0;QD=31.98;SNPEFF_AMINO_ACID_CHANGE=G284;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42354594_42354768;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRTC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269945    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1408,111,0
19    42354944    rs10500284    A    T    196.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMRTC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269945    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
19    42364994    rs35686174    T    TC    1106.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=2;HaplotypeScore=128.2754;IndelType=I;MQ=59.55;MQ0=0;QD=36.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221975    GT:AD:DP:GQ:PL    1/1:3,27:30:81.27:1149,81,0
19    42365004    rs2075749    G    C    626.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=26.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221975    GT:AD:DP:GQ:PL    1/1:0,24:24:57.16:659,57,0
19    42373298    rs1366610    G    A    195.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=19.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221975    GT:AD:DP:GQ:PL    1/1:0,10:10:18.06:229,18,0
19    42373679    rs2075750    C    T    990.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221975    GT:AD:DP:GQ:PL    1/1:0,27:27:78.25:1023,78,0
19    42373893    rs2075751    C    T    805.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221975    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:838,63,0
19    42375244    rs2075754    C    T    767.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221975    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:800,60,0
19    42462788    rs1075728    G    A    104.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222008    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:137,12,0
19    42463447    rs735571    C    T    814.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=31.32;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_42463389_42463528;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABAC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222008    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:847,66,0
19    42474200    rs12975677    A    T    227.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302102    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:260,21,0
19    42489516    rs2217342    A    C    1237.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.59;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=T192;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42489458_42489575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP1A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000368080    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1270,102,0
19    42736267    rs851609    A    G    236.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_AMINO_ACID_CHANGE=L358;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42736209_42736301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSK3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398249    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:269,21,0
19    42793590    rs3826706    G    A    161.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000160740    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
19    42799049    rs1052023    C    T    1107.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=I1511;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_42798976_42799949;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CIC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000160740    GT:AD:DP:GQ:PL    1/1:0,35:35:87.27:1141,87,0
19    43233397    rs141810038    A    T    3337.52    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=209;Dels=0.0;FS=4.838;HRun=1;HaplotypeScore=2.7861;MQ=58.43;MQ0=0;MQRankSum=1.173;QD=15.97;ReadPosRankSum=1.996;SNPEFF_AMINO_ACID_CHANGE=L374Q;SNPEFF_CODON_CHANGE=cTa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43233275_43233529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327495    GT:AD:DP:GQ:PL    0/1:99,110:209:99:3338,0,2870
19    43243217    rs12185496    A    G    2406.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.79;MQ=51.3;MQ0=1;QD=23.36;SNPEFF_AMINO_ACID_CHANGE=L30S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43242876_43243241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327495    GT:AD:DP:GQ:PL    1/1:0,103:103:99:2439,243,0
19    43243218    rs12185497    A    G    2634.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.79;MQ=51.21;MQ0=1;QD=25.83;SNPEFF_AMINO_ACID_CHANGE=L30;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43242876_43243241;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327495    GT:AD:DP:GQ:PL    1/1:0,102:102:99:2668,249,0
19    43243238    rs11559136    A    G    2873.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.63;MQ0=1;QD=30.25;SNPEFF_AMINO_ACID_CHANGE=L23S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43242876_43243241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327495    GT:AD:DP:GQ:PL    1/1:1,94:95:99:2907,229,0
19    43243248    rs12185500    G    A    2852.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.67;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327495    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2885,229,0
19    43244436    rs149065613    C    T    848.50    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.279;DB;DP=80;Dels=0.0;FS=3.67;HRun=2;HaplotypeScore=1.8939;MQ=56.84;MQ0=0;MQRankSum=-2.121;QD=10.61;ReadPosRankSum=-1.777;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327495    GT:AD:DP:GQ:PL    0/1:43,37:80:99:878,0,1325
19    43257377    rs8100679    C    G    1706.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=51.07;MQ0=1;QD=29.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306511    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1740,150,0
19    43258887    rs2051840    C    G    301.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.69;MQ0=9;QD=14.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469260    GT:AD:DP:GQ:PL    1/1:0,20:21:30.07:334,30,0
19    43269699    rs7260508    C    T    2105.70    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.93;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=R12H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43269670_43269831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306511    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2139,166,0
19    43269704    rs62112127    T    C    878.96    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.42;MQ0=0;QD=14.18;SNPEFF_AMINO_ACID_CHANGE=T10;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43269670_43269831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306511    GT:AD:DP:GQ:PL    1/1:0,62:62:99:912,102,0
19    43269705    rs7245423    G    A    884.99    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.42;MQ0=0;QD=14.27;SNPEFF_AMINO_ACID_CHANGE=T10I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43269670_43269831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306511    GT:AD:DP:GQ:PL    1/1:0,62:62:99:918,102,0
19    43373034    rs12986075    G    A    736.50    MQFilter40    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=5.414;DB;DP=230;Dels=0.0;FS=2.124;HRun=0;HaplotypeScore=0.6651;MQ=15.61;MQ0=116;MQRankSum=0.815;QD=3.2;ReadPosRankSum=0.845;SNPEFF_AMINO_ACID_CHANGE=R195*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_19_43372908_43373186;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000403380    GT:AD:DP:GQ:PL    0/1:141,87:230:99:766,0,761
19    43373078    rs143301512    C    G    946.35    MQFilter40    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.878;DB;DP=231;Dels=0.0;FS=2.576;HRun=0;HaplotypeScore=0.8667;MQ=22.85;MQ0=83;MQRankSum=-0.424;QD=4.1;ReadPosRankSum=-0.284;SNPEFF_AMINO_ACID_CHANGE=W180S;SNPEFF_CODON_CHANGE=tGg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43372908_43373186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000403380    GT:AD:DP:GQ:PL    0/1:144,87:231:99:976,0,1705
19    43373263    rs72623873    G    A    1060.93    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.336;DB;DP=66;Dels=0.0;FS=2.372;HRun=0;HaplotypeScore=0.9996;MQ=50.3;MQ0=0;MQRankSum=0.616;QD=16.07;ReadPosRankSum=0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244296    GT:AD:DP:GQ:PL    0/1:31,35:66:99:1091,0,875
19    43439793    rs7245978    G    A    6017.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5047;MQ=48.93;MQ0=1;QD=34.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=PSG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471557    GT:AD:DP:GQ:PL    1/1:0,175:176:99:6017,460,0
19    43440025    rs148932211    G    GACAC    377.22    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=181.6558;IndelType=I;MQ=52.96;MQ0=0;MQRankSum=-2.77;QD=16.4;ReadPosRankSum=-3.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=polymorphic_pseudogene;SNPEFF_GENE_NAME=PSG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471557    GT:AD:DP:GQ:PL    0/1:10,9:23:99:416,0,119
19    43448156    rs55931787    G    A    875.63    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.06;DB;DP=83;Dels=0.0;FS=3.366;HRun=0;HaplotypeScore=0.0;MQ=42.61;MQ0=0;MQRankSum=-6.2;QD=10.55;ReadPosRankSum=1.449;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:49,34:83:99:906,0,1315
19    43448547    rs4432360    T    C    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=15.18;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
19    43518942    rs6509053    A    T    145.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=24.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488205    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:178,15,0
19    43519095    rs7251480    A    C    307.46    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.695;DB;DP=24;Dels=0.0;FS=6.52;HRun=0;HaplotypeScore=0.0;MQ=56.08;MQ0=0;MQRankSum=-0.695;QD=12.81;ReadPosRankSum=-0.753;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488205    GT:AD:DP:GQ:PL    0/1:11,13:24:99:337,0,393
19    43519362    rs11083680    C    T    2294.79    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.149;DB;DP=163;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2337;MQ=59.7;MQ0=0;MQRankSum=-0.111;QD=14.08;ReadPosRankSum=0.379;SNPEFF_AMINO_ACID_CHANGE=Q168;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43519268_43519522;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    0/1:84,79:163:99:2325,0,2578
19    43519442    rs10414166    T    C    5384.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=59.98;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=N142D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43519268_43519522;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    1/1:0,158:159:99:5384,403,0
19    43520204    rs4803564    G    C    2046.02    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.85;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=54.87;MQ0=0;MQRankSum=-1.008;QD=14.93;ReadPosRankSum=-0.756;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488205    GT:AD:DP:GQ:PL    0/1:57,80:137:99:2076,0,1727
19    43520298    rs3810407    C    T    900.42    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=3.788;DB;DP=45;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.9979;MQ=47.48;MQ0=1;MQRankSum=-0.867;QD=20.01;ReadPosRankSum=1.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488205    GT:AD:DP:GQ:PL    0/1:16,29:45:99:930,0,348
19    43520321    rs2354823    G    A    691.45    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.24;MQ0=1;MQRankSum=-0.196;QD=21.61;ReadPosRankSum=1.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488205    GT:AD:DP:GQ:PL    0/1:10,22:32:99:721,0,220
19    43522911    rs9789252    A    C    3506.07    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.247;DB;DP=239;Dels=0.0;FS=5.596;HRun=0;HaplotypeScore=1.7753;MQ=50.21;MQ0=1;MQRankSum=0.967;QD=14.67;ReadPosRankSum=-0.584;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    0/1:117,121:239:99:3506,0,3492
19    43528729    rs12610793    T    G    1135.02    MQFilter40    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=1.912;DB;DP=95;Dels=0.0;FS=1.36;HRun=3;HaplotypeScore=0.9983;MQ=34.0;MQ0=17;MQRankSum=1.274;QD=11.95;ReadPosRankSum=0.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    0/1:44,51:95:99:1165,0,745
19    43529026    rs2471952    C    T    1553.20    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.767;DB;DP=205;Dels=0.0;FS=5.037;HRun=0;HaplotypeScore=2.5358;MQ=46.53;MQ0=6;MQRankSum=-1.309;QD=7.58;ReadPosRankSum=-0.104;SNPEFF_AMINO_ACID_CHANGE=V83I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43528843_43529208;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320078    GT:AD:DP:GQ:PL    0/1:97,107:205:99:1583,0,2738
19    43529027    rs1058958    A    G    1525.60    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.991;DB;DP=205;Dels=0.0;FS=2.497;HRun=0;HaplotypeScore=1.5779;MQ=45.94;MQ0=6;MQRankSum=-0.53;QD=7.44;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=Y82;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43528843_43529208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000320078    GT:AD:DP:GQ:PL    0/1:96,109:205:99:1556,0,2688
19    43529312    rs71336836    G    GAC    246.89    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.22;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=115.8007;IndelType=I;MQ=56.74;MQ0=0;MQRankSum=0.15;QD=8.23;ReadPosRankSum=-0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    0/1:22,8:29:99:286,0,199
19    43529380    rs2526711    A    G    214.20    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=1.309;QD=17.85;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    0/1:5,7:12:99:244,0,164
19    43530379    rs2526716    A    G    382.16    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.111;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.64;MQ0=0;MQRankSum=-1.14;QD=14.15;ReadPosRankSum=0.412;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    0/1:13,14:27:99:412,0,419
19    43530390    rs2736151    C    T    438.96    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.141;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=54.76;MQ0=0;MQRankSum=-3.288;QD=11.26;ReadPosRankSum=1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    0/1:21,17:39:99:469,0,689
19    43530640    rs60941975    GT    G    749.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=1;HaplotypeScore=46.5015;IndelType=D;MQ=61.13;MQ0=0;QD=39.45;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306322    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:792,57,0
19    43576547    rs7248212    C    T    2066.83    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DB;DP=137;Dels=0.0;FS=7.017;HRun=1;HaplotypeScore=1.9443;MQ=50.55;MQ0=1;MQRankSum=-1.816;QD=15.09;ReadPosRankSum=-0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329509    GT:AD:DP:GQ:PL    0/1:64,73:137:99:2097,0,1906
19    43576688    rs3928558    C    T    1665.81    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=0.154;DB;DP=190;Dels=0.0;FS=6.893;HRun=1;HaplotypeScore=4.5278;MQ=46.52;MQ0=7;MQRankSum=-7.331;QD=8.77;ReadPosRankSum=-0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329509    GT:AD:DP:GQ:PL    0/1:115,75:190:99:1696,0,3394
19    43579888    rs35869817    G    C    206.95    MQFilter40    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.492;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=24.34;MQ0=27;MQRankSum=-0.926;QD=3.18;ReadPosRankSum=-0.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329509    GT:AD:DP:GQ:PL    0/1:43,22:65:99:237,0,667
19    43584851    rs7247961    A    G    456.03    MQFilter40    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.283;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.5;MQ0=10;MQRankSum=0.488;QD=8.29;ReadPosRankSum=-0.284;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491995    GT:AD:DP:GQ:PL    0/1:30,25:55:99:486,0,654
19    43586835    rs9676914    T    C    600.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=31.62;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329509    GT:AD:DP:GQ:PL    1/1:0,19:19:57.12:634,57,0
19    43679088    rs2355433    A    G    332.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.54;MQ0=0;QD=25.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481294    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:365,30,0
19    43679209    rs3950949    T    C    961.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.39;MQ0=1;QD=26.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481294    GT:AD:DP:GQ:PL    1/1:0,36:36:87.20:994,87,0
19    43679410    rs1058467    A    G    5224.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=40.47;MQ0=6;QD=29.02;SNPEFF_AMINO_ACID_CHANGE=A307;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43679367_43679621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    1/1:0,180:180:99:5224,436,0
19    43679644    rs8113109    A    G    1892.02    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.798;DB;DP=147;Dels=0.0;FS=2.345;HRun=0;HaplotypeScore=1.6624;MQ=59.18;MQ0=0;MQRankSum=-1.11;QD=12.87;ReadPosRankSum=-0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481294    GT:AD:DP:GQ:PL    0/1:80,67:147:99:1922,0,2398
19    43680037    rs1135901    T    A    1698.68    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=5.136;DB;DP=116;Dels=0.0;FS=0.772;HRun=0;HaplotypeScore=1.4972;MQ=49.23;MQ0=0;MQRankSum=-0.372;QD=14.64;ReadPosRankSum=-1.443;SNPEFF_AMINO_ACID_CHANGE=T232S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43680022_43680300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    0/1:52,61:116:99:1729,0,1362
19    43680051    rs1058285    C    T    3863.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4102;MQ=49.71;MQ0=0;QD=31.41;SNPEFF_AMINO_ACID_CHANGE=R227H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43680022_43680300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    1/1:1,121:123:99:3864,307,0
19    43680269    rs1058259    G    C    2668.71    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=176;Dels=0.0;FS=1.254;HRun=0;HaplotypeScore=1.6637;MQ=49.69;MQ0=1;MQRankSum=-0.892;QD=15.16;ReadPosRankSum=-1.462;SNPEFF_AMINO_ACID_CHANGE=N154K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43680022_43680300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    0/1:86,90:176:99:2699,0,2636
19    43682882    rs138345338    T    G    150.54    MQFilter40    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=58;Dels=0.0;FS=5.176;HRun=1;HaplotypeScore=0.8667;MQ=38.18;MQ0=9;MQRankSum=-5.627;QD=2.6;ReadPosRankSum=-0.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401992    GT:AD:DP:GQ:PL    0/1:31,27:58:99:181,0,916
19    43683281    rs7253651    A    G    2928.04    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=6.501;DB;DP=177;Dels=0.0;FS=7.137;HRun=0;HaplotypeScore=1.9968;MQ=50.39;MQ0=0;MQRankSum=-0.766;QD=16.54;ReadPosRankSum=1.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401992    GT:AD:DP:GQ:PL    0/1:76,100:177:99:2958,0,2319
19    43683369    rs11671967    C    T    563.94    MQFilter40    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=2.572;DB;DP=71;Dels=0.0;FS=1.589;HRun=4;HaplotypeScore=0.0;MQ=39.36;MQ0=2;MQRankSum=-3.892;QD=7.94;ReadPosRankSum=-0.544;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401992    GT:AD:DP:GQ:PL    0/1:43,28:71:99:594,0,1193
19    43683376    rs11671948    A    G    499.23    MQFilter40    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=70;Dels=0.0;FS=1.982;HRun=0;HaplotypeScore=0.0;MQ=39.26;MQ0=2;MQRankSum=-3.926;QD=7.13;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401992    GT:AD:DP:GQ:PL    0/1:43,27:70:99:529,0,1200
19    43683399    rs7254223    G    C    1491.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.865;MQ=34.24;MQ0=2;QD=26.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401992    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1524,138,0
19    43683471    rs7253929    A    G    503.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=27.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401992    GT:AD:DP:GQ:PL    1/1:0,18:18:51.04:536,51,0
19    43687449    rs62115030    A    G    130.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=33.26;MQ0=1;QD=18.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    1/1:0,7:7:15.02:163,15,0
19    43687589    rs138936030    G    A    390.21    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=34;Dels=0.0;FS=5.608;HRun=0;HaplotypeScore=0.0;MQ=51.76;MQ0=1;MQRankSum=1.435;QD=11.48;ReadPosRankSum=-1.926;SNPEFF_AMINO_ACID_CHANGE=H155;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43687434_43687623;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401992    GT:AD:DP:GQ:PL    0/1:19,15:34:99:420,0,584
19    43687613    rs115777064    T    C    359.12    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.359;DB;DP=35;Dels=0.0;FS=3.093;HRun=1;HaplotypeScore=0.0;MQ=54.68;MQ0=0;MQRankSum=1.665;QD=10.26;ReadPosRankSum=-1.422;SNPEFF_AMINO_ACID_CHANGE=P147;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43687434_43687623;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401992    GT:AD:DP:GQ:PL    0/1:20,15:35:99:389,0,650
19    43687770    rs10420089    C    T    80.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.38;MQ0=0;QD=20.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
19    43688854    rs7248859    G    C    4187.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.7172;MQ=50.12;MQ0=1;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    1/1:0,127:129:99:4187,322,0
19    43688898    rs71336844    TC    T    1921.14    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.779;DB;DP=177;FS=0.587;HRun=5;HaplotypeScore=752.8855;IndelType=D;MQ=54.17;MQ0=1;MQRankSum=-0.223;QD=10.67;ReadPosRankSum=0.725;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    0/1:108,72:177:99:1960,0,3494
19    43690271    rs8107300    A    G    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    43690506    rs8107936    G    C    1996.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=52.67;MQ0=1;QD=28.53;SNPEFF_AMINO_ACID_CHANGE=L18V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43690494_43690674;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2030,159,0
19    43690678    rs12610809    G    A    96.32    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=46.13;MQ0=1;MQRankSum=-1.031;QD=8.03;ReadPosRankSum=1.749;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    0/1:5,7:12:99:126,0,183
19    43690700    rs12609374    T    C    47.36    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=43.46;MQ0=1;MQRankSum=-2.219;QD=4.74;ReadPosRankSum=-2.219;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342951    GT:AD:DP:GQ:PL    0/1:4,6:10:77.35:77,0,143
19    43697317    rs1136228    G    C    323.39    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.02;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.359;QD=19.02;ReadPosRankSum=-0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    0/1:5,11:17:99:353,0,161
19    43698300    rs7249880    A    T    217.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.201;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=15.56;ReadPosRankSum=-0.663;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    0/1:7,7:14:99:248,0,248
19    43698364    rs7250907    T    G    1269.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=58.71;MQ0=0;MQRankSum=1.54;QD=35.26;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    1/1:1,35:36:80.64:1302,81,0
19    43698432    rs7250101    C    T    1408.57    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=1.233;DB;DP=101;Dels=0.0;FS=3.821;HRun=1;HaplotypeScore=0.8667;MQ=59.77;MQ0=0;MQRankSum=1.62;QD=13.95;ReadPosRankSum=0.533;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    0/1:50,51:101:99:1439,0,1631
19    43698759    rs56022011    G    A    1260.53    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=88;Dels=0.0;FS=0.817;HRun=2;HaplotypeScore=0.9993;MQ=59.74;MQ0=0;MQRankSum=1.28;QD=14.32;ReadPosRankSum=0.845;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    0/1:41,47:88:99:1291,0,1324
19    43698974    rs4141229    T    C    460.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:494,39,0
19    43699336    rs1058718    T    C    7022.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.296;DB;DP=223;Dels=0.0;FS=3.032;HRun=0;HaplotypeScore=3.4503;MQ=47.89;MQ0=1;MQRankSum=-0.843;QD=31.49;ReadPosRankSum=-0.671;SNPEFF_AMINO_ACID_CHANGE=K174E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43699147_43699425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433626    GT:AD:DP:GQ:PL    1/1:1,222:223:99:7022,509,0
19    43699417    rs3859474    A    G    2929.01    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=6.993;DB;DP=175;Dels=0.0;FS=1.296;HRun=2;HaplotypeScore=2.6264;MQ=54.85;MQ0=0;MQRankSum=-2.091;QD=16.74;ReadPosRankSum=-0.591;SNPEFF_AMINO_ACID_CHANGE=S147P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43699147_43699425;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433626    GT:AD:DP:GQ:PL    0/1:78,96:175:99:2959,0,2384
19    43702000    rs184296323    G    T    110.16    MQFilter40;QDFilter2    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.6;DB;DP=61;Dels=0.0;FS=1.817;HRun=3;HaplotypeScore=0.0;MQ=34.14;MQ0=13;MQRankSum=-5.087;QD=1.78;ReadPosRankSum=0.474;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    0/1:40,21:61:99:140,0,991
19    43702098    rs11428975    A    AT    1670.64    PASS    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.797;DB;DP=118;FS=10.581;HRun=1;HaplotypeScore=263.3356;IndelType=I;MQ=26.48;MQ0=36;MQRankSum=0.705;QD=9.39;ReadPosRankSum=-0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    0/1:102,76:118:99:1710,0,2320
19    43702342    rs9789333    C    T    2589.76    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=7.496;DB;DP=193;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=54.99;MQ0=0;MQRankSum=1.204;QD=13.42;ReadPosRankSum=-0.613;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43702149_43702427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    0/1:99,94:193:99:2620,0,2526
19    43708245    rs3170216    G    C    1749.76    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.564;DB;DP=138;Dels=0.0;FS=4.108;HRun=0;HaplotypeScore=2.5296;MQ=59.96;MQ0=0;MQRankSum=1.437;QD=12.68;ReadPosRankSum=-1.917;SNPEFF_AMINO_ACID_CHANGE=L75V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43708038_43708403;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    0/1:69,69:138:99:1780,0,2230
19    43708752    rs11672441    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    43708926    rs11673307    G    T    692.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.08;MQ0=0;QD=32.98;SNPEFF_AMINO_ACID_CHANGE=P34Q;SNPEFF_CODON_CHANGE=cCg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43708915_43709099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:726,54,0
19    43708968    rs11669435    T    C    1172.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.52;MQ0=0;QD=30.86;SNPEFF_AMINO_ACID_CHANGE=E20G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43708915_43709099;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    1/1:0,38:38:93.30:1206,93,0
19    43708978    rs67183694    TC    T    1540.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=1;HaplotypeScore=303.3941;IndelType=D;MQ=56.8;MQ0=0;QD=38.52;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_43708915_43709099;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000451895    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1583,116,0
19    43709072    rs56700032    G    A    775.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.18;MQ0=1;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    1/1:0,21:21:60.20:808,60,0
19    43709413    rs10425249    C    A    69.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.54;MQ0=0;QD=23.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    1/1:0,3:3:9:102,9,0
19    43709527    rs10425858    G    A    960.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.85;MQ0=0;QD=30.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:993,78,0
19    43709619    rs34341467    C    T    1982.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.29;MQ0=0;QD=28.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2015,165,0
19    43709647    rs12985206    G    A    2265.91    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.79;MQ0=0;QD=26.04;SNPEFF_AMINO_ACID_CHANGE=T14;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43709625_43709715;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2299,186,0
19    43709654    rs11883277    C    A    2351.80    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.06;MQ0=0;QD=26.42;SNPEFF_AMINO_ACID_CHANGE=R12L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43709625_43709715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2385,189,0
19    43709656    rs11883278    C    G    2296.96    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.47;MQ0=0;QD=25.24;SNPEFF_AMINO_ACID_CHANGE=Q11H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43709625_43709715;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    1/1:0,91:91:99:2330,189,0
19    43709701    rs61995941    T    C    439.11    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.56;DB;DP=67;Dels=0.0;FS=1.341;HRun=1;HaplotypeScore=0.7887;MQ=46.05;MQ0=0;MQRankSum=-4.18;QD=6.46;ReadPosRankSum=-0.104;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495316    GT:AD:DP:GQ:PL    0/1:44,22:67:99:469,0,1430
19    43709725    rs61995939    A    G    360.27    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=4.326;DB;DP=54;Dels=0.0;FS=8.12;HRun=0;HaplotypeScore=0.0;MQ=45.43;MQ0=0;MQRankSum=-4.702;QD=6.67;ReadPosRankSum=0.636;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_43709625_43709926;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405312    GT:AD:DP:GQ:PL    0/1:34,20:54:99:390,0,1109
19    43709787    rs61995940    T    C    52.78    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.266;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.73;MQ0=0;MQRankSum=-2.965;QD=3.1;ReadPosRankSum=-0.251;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244295    GT:AD:DP:GQ:PL    0/1:11,6:17:82.77:83,0,368
19    43709798    rs35783805    C    T    426.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.15;MQ0=0;QD=28.46;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_43709625_43709926;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405312    GT:AD:DP:GQ:PL    1/1:0,15:15:42.05:460,42,0
19    43709815    rs62116515    T    C    98.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.68;MQ0=0;QD=16.38;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_43709625_43709926;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405312    GT:AD:DP:GQ:PL    1/1:0,6:6:12.01:131,12,0
19    43716423    rs35394915    T    G    134.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.047;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.0;MQ0=0;MQRankSum=0.983;QD=7.47;ReadPosRankSum=-0.234;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEACAMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489959    GT:AD:DP:GQ:PL    0/1:12,6:18:99:164,0,401
19    43716538    rs4444436    A    G    1659.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=32.26;MQ0=10;QD=21.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEACAMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489959    GT:AD:DP:GQ:PL    1/1:0,76:76:99:1693,153,0
19    43716621    rs4550580    A    G    919.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.89;MQ0=11;QD=19.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEACAMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489959    GT:AD:DP:GQ:PL    1/1:0,48:48:96.10:952,96,0
19    43716636    rs4550581    A    G    760.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.32;MQ0=7;QD=20.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEACAMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489959    GT:AD:DP:GQ:PL    1/1:0,38:38:81.06:793,81,0
19    43716694    rs4263044    G    A    156.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.53;MQ0=2;QD=14.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEACAMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489959    GT:AD:DP:GQ:PL    1/1:0,11:11:18.04:189,18,0
19    43716712    rs4494655    T    A    63.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.44;MQ0=1;QD=12.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CEACAMP10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489959    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:96,9,0
19    43761973    rs10412177    C    T    62.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.75;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270077    GT:AD:DP:GQ:PL    0/1:1,3:4:24.95:93,0,25
19    43763059    rs12977717    C    T    1301.29    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.513;DB;DP=102;Dels=0.0;FS=7.145;HRun=0;HaplotypeScore=2.5808;MQ=57.5;MQ0=0;MQRankSum=-1.159;QD=12.76;ReadPosRankSum=-0.153;SNPEFF_AMINO_ACID_CHANGE=R220Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43763009_43763287;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443718    GT:AD:DP:GQ:PL    0/1:54,48:102:99:1331,0,1710
19    43763344    rs62115876    G    A    919.71    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.215;DB;DP=69;Dels=0.0;FS=1.369;HRun=0;HaplotypeScore=0.0;MQ=49.26;MQ0=2;MQRankSum=-1.662;QD=13.33;ReadPosRankSum=0.699;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:37,32:69:99:950,0,1078
19    43765765    rs1860085    A    C    67.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.63;MQ0=0;MQRankSum=-1.133;QD=6.75;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:6,4:10:97.53:98,0,214
19    43765800    rs3859479    A    T    506.32    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=47.17;MQ0=0;MQRankSum=-0.934;QD=20.25;ReadPosRankSum=-0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:9,16:25:99:536,0,285
19    43765830    rs2074924    C    A    702.82    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.42;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.58;MQ0=0;MQRankSum=-1.226;QD=14.95;ReadPosRankSum=1.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:22,25:47:99:733,0,756
19    43765938    rs56778279    A    G    1866.59    MQFilter40    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.709;DB;DP=160;Dels=0.0;FS=7.824;HRun=3;HaplotypeScore=0.9933;MQ=30.25;MQ0=5;MQRankSum=-0.132;QD=11.67;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:75,85:160:99:1897,0,1663
19    43766383    rs34435771    A    G    741.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.331;DB;DP=56;Dels=0.0;FS=4.35;HRun=1;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=3.878;QD=13.23;ReadPosRankSum=-0.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:32,24:56:99:771,0,1026
19    43766392    rs8108259    C    A    906.32    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.195;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=-4.269;QD=17.43;ReadPosRankSum=-0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:22,30:52:99:936,0,753
19    43772389    rs4803592    C    T    505.32    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.443;DB;DP=37;Dels=0.0;FS=6.388;HRun=0;HaplotypeScore=0.0;MQ=58.54;MQ0=0;MQRankSum=0.684;QD=13.66;ReadPosRankSum=-1.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:18,19:37:99:535,0,532
19    43772415    rs73553915    C    T    275.77    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.162;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.997;MQ=57.41;MQ0=0;MQRankSum=-0.036;QD=13.13;ReadPosRankSum=-1.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:9,12:21:99:306,0,254
19    43772419    .    C    CACAT    459.56    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DP=21;FS=0.0;HRun=0;HaplotypeScore=144.0617;IndelType=I;MQ=57.94;MQ0=0;MQRankSum=-0.318;QD=21.88;ReadPosRankSum=-1.588;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:12,9:21:99:499,0,313
19    43773303    rs58773757    T    C    32.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=8.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:1,3:4:33.21:62,0,33
19    43773599    rs1058071    T    C    850.35    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.87;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.816;QD=9.89;ReadPosRankSum=-1.534;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_43773520_43773650;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:45,41:86:99:880,0,1514
19    43773626    rs3179010    G    A    663.20    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.447;DB;DP=58;Dels=0.0;FS=7.487;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.512;QD=11.43;ReadPosRankSum=0.431;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_43773520_43773650;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244293    GT:AD:DP:GQ:PL    0/1:34,24:58:99:693,0,1101
19    43780805    rs145905066    C    A    34.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.03;MQ0=0;MQRankSum=-1.231;QD=6.86;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CEACAMP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455211    GT:AD:DP:GQ:PL    0/1:3,2:5:64.27:64,0,102
19    43857873    rs45441892    G    C    751.14    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=3.364;DB;DP=81;Dels=0.0;FS=4.9;HRun=1;HaplotypeScore=3.7306;MQ=60.0;MQ0=0;MQRankSum=0.921;QD=9.27;ReadPosRankSum=1.098;SNPEFF_AMINO_ACID_CHANGE=A3P;SNPEFF_CODON_CHANGE=Gcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43857825_43857918;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378009    GT:AD:DP:GQ:PL    0/1:52,29:81:99:781,0,1368
19    43858317    rs4803613    G    A    160.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=16.08;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378009    GT:AD:DP:GQ:PL    0/1:4,6:10:99:191,0,125
19    43859549    rs1962260    T    C    285.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.72;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378009    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:318,27,0
19    43860053    rs71350665    G    A    518.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.35;MQ0=2;QD=27.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378012    GT:AD:DP:GQ:PL    1/1:1,18:19:48.11:551,48,0
19    43860192    rs71337594    T    G    42.72    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=10.61;MQ0=23;QD=1.58;SNPEFF_AMINO_ACID_CHANGE=V184G;SNPEFF_CODON_CHANGE=gTt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43860144_43860260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378009    GT:AD:DP:GQ:PL    1/1:12,15:27:6.02:74,6,0
19    43864548    rs10425835    C    A    373.04    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.62;MQ0=0;MQRankSum=-1.232;QD=14.92;ReadPosRankSum=1.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378012    GT:AD:DP:GQ:PL    0/1:11,14:25:99:403,0,346
19    43865499    rs71339512    T    C    271.34    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.9;MQ0=9;QD=12.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378009    GT:AD:DP:GQ:PL    1/1:6,15:21:27.05:304,27,0
19    43865840    rs28464741    G    T    35.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.89;MQ0=0;MQRankSum=0.736;QD=8.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378009    GT:AD:DP:GQ:PL    0/1:1,3:4:18.64:65,0,19
19    43866449    rs78718189    G    A    299.04    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.323;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.462;QD=13.0;ReadPosRankSum=0.831;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD177;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378009    GT:AD:DP:GQ:PL    0/1:12,11:23:99:329,0,369
19    43876891    rs7246785    G    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005392.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378007    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    43877394    rs3745996    C    T    480.87    MQFilter40    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.907;DB;DP=58;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.6651;MQ=29.74;MQ0=18;MQRankSum=0.638;QD=8.29;ReadPosRankSum=0.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005392.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378007    GT:AD:DP:GQ:PL    0/1:30,28:58:99:511,0,267
19    43883124    rs4803622    C    T    304.46    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=50.96;MQ0=0;MQRankSum=-1.908;QD=10.5;ReadPosRankSum=-0.329;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005392.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378007    GT:AD:DP:GQ:PL    0/1:16,13:29:99:334,0,500
19    43883273    rs113172076    G    C    749.62    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.708;DB;DP=85;Dels=0.0;FS=8.566;HRun=0;HaplotypeScore=2.1188;MQ=41.71;MQ0=6;MQRankSum=3.688;QD=8.82;ReadPosRankSum=1.175;SNPEFF_AMINO_ACID_CHANGE=P2A;SNPEFF_CODON_CHANGE=Cca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_43883153_43883276;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005392.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378007    GT:AD:DP:GQ:PL    0/1:49,36:85:99:780,0,887
19    43883313    rs4803623    C    G    601.25    PASS    AB=0.397;AC=1;AF=0.50;AN=2;BaseQRankSum=3.427;DB;DP=63;Dels=0.0;FS=6.439;HRun=2;HaplotypeScore=0.8941;MQ=40.79;MQ0=5;MQRankSum=-4.561;QD=9.54;ReadPosRankSum=1.933;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC005392.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378007    GT:AD:DP:GQ:PL    0/1:25,38:63:99:631,0,663
19    43920443    rs3810375    C    G    318.08    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.58;DB;DP=33;Dels=0.0;FS=5.402;HRun=0;HaplotypeScore=1.995;MQ=59.3;MQ0=0;MQRankSum=0.954;QD=9.64;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX101;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253435    GT:AD:DP:GQ:PL    0/1:21,12:33:99:348,0,669
19    43967147    rs2260219    C    T    155.97    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.05;QD=9.17;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244333    GT:AD:DP:GQ:PL    0/1:11,6:17:99:186,0,398
19    43967692    rs2682583    T    C    147.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.573;QD=16.43;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244333    GT:AD:DP:GQ:PL    0/1:3,6:9:88.49:178,0,88
19    43969757    rs2259013    A    G    357.82    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.127;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.304;QD=17.89;ReadPosRankSum=0.608;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377995    GT:AD:DP:GQ:PL    0/1:9,11:20:99:388,0,292
19    43979439    rs2599437    T    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292140    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    43999634    rs1125030    A    C    331.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.898;DB;DP=15;Dels=0.0;FS=2.363;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.184;QD=22.08;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292140    GT:AD:DP:GQ:PL    0/1:5,10:15:99:361,0,151
19    44001891    rs2682549    T    C    69.24    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.956;QD=7.69;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHLDB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292140    GT:AD:DP:GQ:PL    0/1:5,4:9:99:99,0,167
19    44012005    rs2599452    G    A    35.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.77;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETHE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292147    GT:AD:DP:GQ:PL    0/1:2,2:4:47.15:65,0,47
19    44012880    rs2682578    A    G    99.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=16.59;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETHE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292147    GT:AD:DP:GQ:PL    0/1:2,4:6:64.41:130,0,64
19    44030303    rs142759186    T    G    582.03    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.155;DB;DP=39;Dels=0.0;FS=3.005;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.941;QD=14.92;ReadPosRankSum=0.211;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETHE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292147    GT:AD:DP:GQ:PL    0/1:20,19:39:99:612,0,573
19    44047493    rs60624677    CGTGTGTGTGTGTGT    C    403    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=201.4751;IndelType=D;MQ=48.1;MQ0=0;MQRankSum=-2.52;QD=28.79;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538738    GT:AD:DP:GQ:PL    0/1:6,5:14:99:442,0,1089
19    44047550    rs3547    T    C    479.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=51.33;MQ0=0;QD=23.96;SNPEFF_AMINO_ACID_CHANGE=Q601;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44047464_44047657;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543982    GT:AD:DP:GQ:PL    1/1:0,19:20:42.12:512,42,0
19    44047826    rs2682557    T    A    1001.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=N545Y;SNPEFF_CODON_CHANGE=Aat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44047764_44047839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543982    GT:AD:DP:GQ:PL    1/1:0,32:32:75.25:1035,75,0
19    44055726    rs25487    T    C    352.28    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.548;DB;DP=29;Dels=0.0;FS=4.869;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.592;QD=12.15;ReadPosRankSum=0.943;SNPEFF_AMINO_ACID_CHANGE=Q368R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44055723_44055839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543982    GT:AD:DP:GQ:PL    0/1:16,13:29:99:382,0,481
19    44055898    rs25486    C    T    720.48    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=4.21;DB;DP=51;Dels=0.0;FS=3.811;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.25;QD=14.13;ReadPosRankSum=-0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262887    GT:AD:DP:GQ:PL    0/1:27,24:51:99:750,0,666
19    44056412    rs25489    C    T    245.78    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=1.5731;MQ=56.95;MQ0=0;MQRankSum=-0.193;QD=17.56;ReadPosRankSum=0.225;SNPEFF_AMINO_ACID_CHANGE=R249H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44056169_44056427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543982    GT:AD:DP:GQ:PL    0/1:6,8:14:99:276,0,177
19    44057276    rs1799780    G    A    35.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.92;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262887    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:66,0,34
19    44058602    rs11386899    T    TC    805.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=2;HaplotypeScore=47.1779;IndelType=I;MQ=60.49;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262887    GT:AD:DP:GQ:PL    1/1:1,21:22:60.19:847,60,0
19    44079687    rs11553656    G    A    274.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.05;MQ0=0;QD=34.34;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L34079.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244321    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:308,24,0
19    44098903    rs304726    T    A    91.79    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=2.154;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=6.12;ReadPosRankSum=-0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRGQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422989    GT:AD:DP:GQ:PL    0/1:11,4:15:99:122,0,310
19    44111568    rs35296355    TAC    T    253.04    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=131.373;IndelType=D;MQ=57.57;MQ0=0;MQRankSum=0.758;QD=10.12;ReadPosRankSum=0.033;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF428;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391964    GT:AD:DP:GQ:PL    0/1:15,10:25:99:292,0,512
19    44118353    rs2302421    G    A    390.56    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.373;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.043;QD=14.47;ReadPosRankSum=1.48;SNPEFF_AMINO_ACID_CHANGE=D694N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44116253_44118649;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417606    GT:AD:DP:GQ:PL    0/1:14,13:27:99:421,0,402
19    44118680    rs1860149    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417606    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    44128437    rs2240633    A    G    338.09    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.673;QD=21.13;ReadPosRankSum=-0.807;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222374    GT:AD:DP:GQ:PL    0/1:3,13:16:82.12:368,0,82
19    44130453    rs3746003    G    A    57.90    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.273;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.303;QD=3.62;ReadPosRankSum=-0.303;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222374    GT:AD:DP:GQ:PL    0/1:12,4:16:87.90:88,0,353
19    44131297    rs407049    T    C    1213.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CADM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222374    GT:AD:DP:GQ:PL    1/1:0,40:40:96.29:1246,96,0
19    44156472    rs2302524    T    C    1194.05    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.913;DB;DP=87;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.671;QD=13.72;ReadPosRankSum=-0.61;SNPEFF_AMINO_ACID_CHANGE=K175R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44156377_44156523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAUR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221264    GT:AD:DP:GQ:PL    0/1:40,47:87:99:1224,0,1175
19    44160868    rs4251877    A    G    172.52    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=58.29;MQ0=0;MQRankSum=0.466;QD=15.68;ReadPosRankSum=1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAUR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221264    GT:AD:DP:GQ:PL    0/1:5,6:11:99:203,0,149
19    44169738    rs4251831    G    C    130.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLAUR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221264    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
19    44248878    rs346532    A    G    351.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.639;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.077;QD=19.51;ReadPosRankSum=1.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270066    GT:AD:DP:GQ:PL    0/1:6,12:18:99:381,0,153
19    44251470    rs346536    A    T    146.54    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.922;QD=20.93;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270066    GT:AD:DP:GQ:PL    0/1:2,5:7:61.92:177,0,62
19    44254972    rs164070    C    T    1091.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMG9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270066    GT:AD:DP:GQ:PL    1/1:0,28:28:84.26:1124,84,0
19    44273516    rs347519    T    C    267.30    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.54;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=20.56;ReadPosRankSum=0.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262888    GT:AD:DP:GQ:PL    0/1:4,9:13:99:297,0,128
19    44274041    rs2306799    G    A    85.81    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7074;MQ=57.66;MQ0=0;MQRankSum=0.741;QD=8.58;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262888    GT:AD:DP:GQ:PL    0/1:6,4:10:99:116,0,178
19    44274132    rs347520    C    T    207.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262888    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
19    44276370    rs3760979    A    G    163.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262888    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
19    44276513    rs3760980    T    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262888    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    44280837    rs514328    G    A    423.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262888    GT:AD:DP:GQ:PL    1/1:0,13:16:36.11:456,36,0
19    44301513    rs4525602    G    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377950    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    44306482    rs11879355    C    T    672.09    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.853;DB;DP=43;Dels=0.0;FS=2.993;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=0.88;QD=15.63;ReadPosRankSum=-0.122;SNPEFF_AMINO_ACID_CHANGE=A17;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44306469_44306613;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377950    GT:AD:DP:GQ:PL    0/1:17,26:43:99:702,0,464
19    44306576    rs62116993    G    T    335.58    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.23;MQ0=0;MQRankSum=0.251;QD=11.19;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LYPD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414615    GT:AD:DP:GQ:PL    0/1:17,13:30:99:366,0,454
19    44339960    rs349036    C    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF283;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310738    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
19    44350962    rs349037    A    G    68.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.78;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF283;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324461    GT:AD:DP:GQ:PL    0/1:2,3:5:70.19:99,0,70
19    44351694    rs2195980    C    T    1402.53    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=1.549;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6264;MQ=59.56;MQ0=0;MQRankSum=0.521;QD=13.49;ReadPosRankSum=1.091;SNPEFF_AMINO_ACID_CHANGE=T314I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44351091_44353307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF283;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324461    GT:AD:DP:GQ:PL    0/1:57,46:104:99:1433,0,1831
19    44351836    rs957569    G    A    1812.50    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=113;Dels=0.0;FS=1.562;HRun=1;HaplotypeScore=1.8237;MQ=60.0;MQ0=0;MQRankSum=0.607;QD=16.04;ReadPosRankSum=-0.561;SNPEFF_AMINO_ACID_CHANGE=Q361;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44351091_44353307;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF283;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324461    GT:AD:DP:GQ:PL    0/1:53,60:113:99:1842,0,1703
19    44352639    rs1061768    G    A    2339.44    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=4.691;DB;DP=139;Dels=0.0;FS=0.645;HRun=0;HaplotypeScore=6.6364;MQ=59.33;MQ0=0;MQRankSum=0.415;QD=16.83;ReadPosRankSum=1.02;SNPEFF_AMINO_ACID_CHANGE=R629H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44351091_44353307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF283;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324461    GT:AD:DP:GQ:PL    0/1:69,70:139:99:2369,0,1893
19    44352665    rs2356437    T    C    2167.40    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=148;Dels=0.0;FS=1.305;HRun=0;HaplotypeScore=4.235;MQ=59.38;MQ0=0;MQRankSum=0.648;QD=14.64;ReadPosRankSum=-1.096;SNPEFF_AMINO_ACID_CHANGE=C638R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44351091_44353307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF283;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324461    GT:AD:DP:GQ:PL    0/1:72,75:148:99:2197,0,2214
19    44376681    rs1050054    G    T    2466    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF404;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324394    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2499,184,0
19    44377357    rs239942    C    T    3557.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4651;MQ=59.81;MQ0=0;QD=37.06;SNPEFF_AMINO_ACID_CHANGE=G335S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44376519_44378229;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF404;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324394    GT:AD:DP:GQ:PL    1/1:0,95:96:99:3558,262,0
19    44377669    rs12977303    G    A    7716.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=221;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=H231Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44376519_44378229;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF404;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324394    GT:AD:DP:GQ:PL    1/1:0,221:221:99:7717,572,0
19    44387967    rs239939    A    T    669.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF404;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324394    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:703,51,0
19    44417575    rs417699    A    G    1374.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=29.88;SNPEFF_AMINO_ACID_CHANGE=F671;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44416776_44419352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1408,114,0
19    44418077    rs407731    C    T    1201.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_AMINO_ACID_CHANGE=G504S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44416783_44418269;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328762    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1235,96,0
19    44418343    rs406968    C    T    2206.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_AMINO_ACID_CHANGE=P415;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44416776_44419352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2240,163,0
19    44418544    rs425221    A    G    1310.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=34.48;SNPEFF_AMINO_ACID_CHANGE=N348;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44416776_44419352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1343,99,0
19    44418680    rs388685    G    C    1499.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_AMINO_ACID_CHANGE=P303R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44416776_44419352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1532,120,0
19    44418693    rs388706    T    C    1646.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_AMINO_ACID_CHANGE=T299A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44416776_44419352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1679,132,0
19    44418824    rs399098    C    T    2055.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=R255K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44416776_44419352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2089,162,0
19    44419030    rs420242    A    G    3794.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=H186;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44416776_44419352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3794,289,0
19    44422982    rs423320    G    A    559.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:593,45,0
19    44423195    rs423752    G    A    499.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:532,39,0
19    44423570    rs375066    T    C    354.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:388,30,0
19    44423981    rs384329    T    C    793.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,21:21:63.19:826,63,0
19    44426265    rs413093    A    G    808.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,26:26:63.20:841,63,0
19    44426467    rs57712519    T    TG    213.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=16.4848;IndelType=I;MQ=61.78;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269973    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:255,18,0
19    44466754    rs413061    G    C    91.38    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=13.05;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    0/1:2,5:7:61.97:121,0,62
19    44467096    rs383133    T    G    71.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.93;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,106
19    44469577    rs451601    T    G    430.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:463,36,0
19    44469625    rs451612    C    G    165.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
19    44469657    rs374421    A    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    44469708    rs453932    C    T    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    44470189    rs454301    T    A    2998.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.5;MQ0=0;QD=35.69;SNPEFF_AMINO_ACID_CHANGE=F179I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44469956_44471752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    1/1:0,82:84:99:3031,223,0
19    44470420    rs439676    T    C    3376.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_AMINO_ACID_CHANGE=C256R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44469956_44471752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    1/1:0,95:96:99:3377,262,0
19    44470548    rs453640    A    G    4606.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.73;MQ0=0;QD=33.14;SNPEFF_AMINO_ACID_CHANGE=Q298;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44469956_44471752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4606,355,0
19    44470663    rs435590    G    C    4706.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=36.77;SNPEFF_AMINO_ACID_CHANGE=A337P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44469956_44471752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4706,346,0
19    44471209    rs365745    T    A    764.67    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.507;DB;DP=65;Dels=0.0;FS=5.174;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=1.868;QD=11.76;ReadPosRankSum=-0.229;SNPEFF_AMINO_ACID_CHANGE=S519T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44469956_44471752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    0/1:38,27:65:99:795,0,1235
19    44471252    rs61734609    T    C    1112.13    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.158;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-2.196;QD=16.6;ReadPosRankSum=0.019;SNPEFF_AMINO_ACID_CHANGE=L533P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44469956_44471752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    0/1:29,38:67:99:1142,0,944
19    44471323    rs366111    G    A    470.67    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=2.118;DB;DP=59;Dels=0.0;FS=5.504;HRun=0;HaplotypeScore=2.9844;MQ=59.61;MQ0=0;MQRankSum=0.254;QD=7.98;ReadPosRankSum=-0.581;SNPEFF_AMINO_ACID_CHANGE=G557R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44469956_44471752;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF221;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251269    GT:AD:DP:GQ:PL    0/1:38,20:59:99:501,0,1199
19    44492568    rs414402    A    G    280.87    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=17.55;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:6,10:16:99:311,0,202
19    44495553    rs436739    A    G    230.70    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.01;QD=13.57;ReadPosRankSum=-0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:9,8:17:99:261,0,319
19    44495598    rs419839    C    T    462.29    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.991;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.98;MQ0=0;MQRankSum=0.776;QD=10.51;ReadPosRankSum=1.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:26,18:44:99:492,0,921
19    44496070    rs431509    A    G    1248.08    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.628;DB;DP=87;Dels=0.0;FS=0.898;HRun=0;HaplotypeScore=2.6927;MQ=59.74;MQ0=0;MQRankSum=-1.052;QD=14.35;ReadPosRankSum=1.114;SNPEFF_AMINO_ACID_CHANGE=Q73;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44495994_44496086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:41,45:87:99:1278,0,1110
19    44496145    rs421505    T    C    515.37    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.387;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.45;QD=15.62;ReadPosRankSum=0.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:16,17:33:99:545,0,553
19    44500478    rs398235    A    T    2669.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;QD=35.59;SNPEFF_AMINO_ACID_CHANGE=I157F;SNPEFF_CODON_CHANGE=Atc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44500245_44502477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2703,199,0
19    44500761    rs448921    G    A    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=V125I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44500287_44501766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425747    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3267,238,0
19    44501116    rs388812    A    G    3363.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=31.73;SNPEFF_AMINO_ACID_CHANGE=E369;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44500245_44502477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    1/1:0,105:106:99:3364,265,0
19    44501227    rs388471    A    G    3269.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DB;DP=102;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.399;MQ=59.09;MQ0=0;MQRankSum=-1.325;QD=32.05;ReadPosRankSum=-0.679;SNPEFF_AMINO_ACID_CHANGE=G406;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44500245_44502477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    1/1:1,101:102:99:3269,274,0
19    44501518    rs446016    G    A    1204.11    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.508;DB;DP=95;Dels=0.0;FS=8.544;HRun=1;HaplotypeScore=1.4538;MQ=59.8;MQ0=0;MQRankSum=-0.656;QD=12.67;ReadPosRankSum=1.25;SNPEFF_AMINO_ACID_CHANGE=P503;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44500245_44502477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:54,41:95:99:1234,0,1749
19    44501627    rs35292176    T    C    355.88    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.042;QD=18.73;ReadPosRankSum=-1.902;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:7,12:19:99:386,0,235
19    44503379    rs452554    C    T    3018.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=59.74;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    1/1:1,88:89:99:3052,229,0
19    44503541    rs11330320    TA    T    852.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=105.3859;IndelType=D;MQ=60.47;MQ0=0;QD=37.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    1/1:0,23:23:69.22:894,69,0
19    44503569    rs7252394    G    A    286.41    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.54;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.847;QD=17.9;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:7,9:16:99:316,0,250
19    44503607    rs7253205    T    C    166.43    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=0.387;QD=15.13;ReadPosRankSum=-1.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270014    GT:AD:DP:GQ:PL    0/1:5,6:11:99:196,0,170
19    44511202    rs2356549    A    T    314.34    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.2;DB;DP=33;Dels=0.0;FS=3.133;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.075;QD=9.53;ReadPosRankSum=-0.856;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_44511163_44511245;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF230;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429154    GT:AD:DP:GQ:PL    0/1:19,14:33:99:344,0,630
19    44511223    rs424147    T    G    1267.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_44511163_44511245;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF230;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429154    GT:AD:DP:GQ:PL    1/1:0,35:35:96.31:1301,96,0
19    44511389    rs2191566    G    T    33.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.38;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF230;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429154    GT:AD:DP:GQ:PL    0/1:2,2:4:62.69:64,0,63
19    44530390    rs8101750    T    C    353.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF222;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000187879    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:386,30,0
19    44535999    rs7258517    G    T    1045.47    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.723;DB;DP=69;Dels=0.0;FS=4.821;HRun=2;HaplotypeScore=0.6651;MQ=59.67;MQ0=0;MQRankSum=0.97;QD=15.15;ReadPosRankSum=0.488;SNPEFF_AMINO_ACID_CHANGE=V4F;SNPEFF_CODON_CHANGE=Gtt/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44535970_44537260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF222;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000251272    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1075,0,892
19    44564981    rs3826941    G    A    1457    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.567;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=59.83;MQ0=0;MQRankSum=-0.206;QD=13.25;ReadPosRankSum=-1.94;SNPEFF_AMINO_ACID_CHANGE=R74;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44564902_44564994;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF223;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434772    GT:AD:DP:GQ:PL    0/1:56,54:110:99:1487,0,1770
19    44565125    rs4502339    A    G    188.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF223;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434772    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:221,18,0
19    44570393    rs6509138    C    A    965.70    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.083;DB;DP=73;Dels=0.0;FS=0.904;HRun=1;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;MQRankSum=1.014;QD=13.23;ReadPosRankSum=-1.912;SNPEFF_AMINO_ACID_CHANGE=L138I;SNPEFF_CODON_CHANGE=Cta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44570217_44572142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF223;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434772    GT:AD:DP:GQ:PL    0/1:40,33:73:99:996,0,1315
19    44570551    rs4375771    G    A    1779.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.789;DB;DP=132;Dels=0.0;FS=14.823;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.205;QD=13.48;ReadPosRankSum=0.361;SNPEFF_AMINO_ACID_CHANGE=A190;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44570217_44572142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF223;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434772    GT:AD:DP:GQ:PL    0/1:71,61:132:99:1809,0,2079
19    44571154    rs4433920    T    C    990.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=72;Dels=0.0;FS=8.229;HRun=0;HaplotypeScore=2.953;MQ=59.42;MQ0=0;MQRankSum=0.223;QD=13.76;ReadPosRankSum=-0.881;SNPEFF_AMINO_ACID_CHANGE=H391;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44570217_44572142;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF223;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434772    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1020,0,1055
19    44571260    rs148654869    C    A    533.64    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.612;DB;DP=92;Dels=0.0;FS=3.075;HRun=7;HaplotypeScore=2.3288;MQ=59.8;MQ0=0;MQRankSum=0.129;QD=5.8;ReadPosRankSum=-2.136;SNPEFF_AMINO_ACID_CHANGE=P427T;SNPEFF_CODON_CHANGE=Cca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44570217_44572142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF223;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434772    GT:AD:DP:GQ:PL    0/1:62,30:92:99:564,0,1992
19    44585159    rs4803674    T    A    1305.71    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=1.561;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.027;QD=15.36;ReadPosRankSum=-0.136;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421176    GT:AD:DP:GQ:PL    0/1:44,41:85:99:1336,0,1424
19    44586076    rs4553729    T    C    742    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421176    GT:AD:DP:GQ:PL    1/1:0,19:19:57.18:775,57,0
19    44589716    rs4803675    C    T    103.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=1.3;QD=14.75;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421176    GT:AD:DP:GQ:PL    0/1:3,4:7:97.39:133,0,97
19    44589999    rs139900131    TCTC    T    1994.02    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=6.668;DB;DP=98;FS=12.208;HRun=0;HaplotypeScore=387.6268;IndelType=D;MQ=57.71;MQ0=0;MQRankSum=-2.651;QD=20.35;ReadPosRankSum=1.204;SNPEFF_AMINO_ACID_CHANGE=FS123F;SNPEFF_CODON_CHANGE=ttctcc/ttc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_19_44589867_44591623;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF284;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421176    GT:AD:DP:GQ:PL    0/1:54,44:98:99:2033,0,3183
19    44590558    rs7255701    C    T    2096.94    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.926;DB;DP=159;Dels=0.0;FS=0.591;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.08;QD=13.19;ReadPosRankSum=-1.017;SNPEFF_AMINO_ACID_CHANGE=H309;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44589867_44591623;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF284;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421176    GT:AD:DP:GQ:PL    0/1:88,71:159:99:2127,0,2782
19    44591360    rs8113249    G    A    1928.93    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.41;DB;DP=114;Dels=0.0;FS=7.345;HRun=1;HaplotypeScore=1.8055;MQ=59.84;MQ0=0;MQRankSum=0.967;QD=16.92;ReadPosRankSum=-0.831;SNPEFF_AMINO_ACID_CHANGE=E577K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44589867_44591623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF284;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421176    GT:AD:DP:GQ:PL    0/1:47,67:114:99:1959,0,1466
19    44591554    rs8113487    G    C    81.45    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=20.36;ReadPosRankSum=-0.727;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF284;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421176    GT:AD:DP:GQ:PL    0/1:1,3:4:23.21:111,0,23
19    44604914    rs62115526    T    C    1500.16    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=1.946;DB;DP=86;Dels=0.0;FS=1.077;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.315;QD=17.44;ReadPosRankSum=1.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269981    GT:AD:DP:GQ:PL    0/1:38,48:86:99:1530,0,1080
19    44605123    rs4803676    G    A    1631.38    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.981;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6274;MQ=59.77;MQ0=0;MQRankSum=-1.696;QD=15.99;ReadPosRankSum=-1.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269981    GT:AD:DP:GQ:PL    0/1:44,58:102:99:1661,0,1316
19    44610665    rs2068061    A    G    744.38    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.217;DB;DP=71;Dels=0.0;FS=0.939;HRun=1;HaplotypeScore=1.9788;MQ=59.41;MQ0=0;MQRankSum=0.321;QD=10.48;ReadPosRankSum=-1.725;SNPEFF_AMINO_ACID_CHANGE=M118V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44610549_44612919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336976    GT:AD:DP:GQ:PL    0/1:40,31:71:99:774,0,1409
19    44610798    rs4239529    A    T    1360.78    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=4.1;DB;DP=117;Dels=0.0;FS=1.536;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.132;QD=11.63;ReadPosRankSum=1.402;SNPEFF_AMINO_ACID_CHANGE=H162L;SNPEFF_CODON_CHANGE=cAc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44610549_44612919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336976    GT:AD:DP:GQ:PL    0/1:70,47:117:99:1391,0,2238
19    44610843    rs72480796    C    T    1710.74    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.612;DB;DP=124;Dels=0.0;FS=3.402;HRun=0;HaplotypeScore=1.8311;MQ=59.85;MQ0=0;MQRankSum=-0.054;QD=13.8;ReadPosRankSum=-0.469;SNPEFF_AMINO_ACID_CHANGE=T177M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44610549_44612919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336976    GT:AD:DP:GQ:PL    0/1:70,54:124:99:1741,0,2049
19    44611066    rs7508149    T    C    2825.02    PASS    AB=0.398;AC=1;AF=0.50;AN=2;BaseQRankSum=2.979;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8406;MQ=59.86;MQ0=0;MQRankSum=0.579;QD=17.55;ReadPosRankSum=-0.606;SNPEFF_AMINO_ACID_CHANGE=H251;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44610549_44612919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336976    GT:AD:DP:GQ:PL    0/1:64,97:161:99:2855,0,1915
19    44611420    rs4508518    A    G    735.46    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.713;DB;DP=73;Dels=0.0;FS=0.891;HRun=0;HaplotypeScore=3.5846;MQ=59.05;MQ0=0;MQRankSum=1.708;QD=10.07;ReadPosRankSum=-1.216;SNPEFF_AMINO_ACID_CHANGE=E369;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44610549_44612919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336976    GT:AD:DP:GQ:PL    0/1:42,31:73:99:765,0,1388
19    44612005    rs3746321    A    G    1099.46    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.067;DB;DP=84;Dels=0.0;FS=1.848;HRun=2;HaplotypeScore=1.5983;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=13.09;ReadPosRankSum=1.291;SNPEFF_AMINO_ACID_CHANGE=G564;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44610549_44612919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336976    GT:AD:DP:GQ:PL    0/1:45,39:84:99:1129,0,1359
19    44612014    rs3200505    A    T    1158.67    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.875;DB;DP=85;Dels=0.0;FS=2.934;HRun=2;HaplotypeScore=3.4582;MQ=60.0;MQ0=0;MQRankSum=1.818;QD=13.63;ReadPosRankSum=1.353;SNPEFF_AMINO_ACID_CHANGE=P567;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44610549_44612919;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336976    GT:AD:DP:GQ:PL    0/1:45,40:85:99:1189,0,1313
19    44612231    rs3746319    A    G    664.50    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=1.303;DB;DP=67;Dels=0.0;FS=6.866;HRun=0;HaplotypeScore=0.9332;MQ=59.31;MQ0=0;MQRankSum=0.784;QD=9.92;ReadPosRankSum=-1.303;SNPEFF_AMINO_ACID_CHANGE=K640E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44610549_44612919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336976    GT:AD:DP:GQ:PL    0/1:42,25:67:99:694,0,1389
19    44613119    rs6509141    C    T    88.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.03;ReadPosRankSum=-1.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF224;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269981    GT:AD:DP:GQ:PL    0/1:4,4:8:99:118,0,142
19    44634903    rs10413195    A    G    443.53    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6603;MQ=49.06;MQ0=0;MQRankSum=0.401;QD=11.99;ReadPosRankSum=0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF225;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262894    GT:AD:DP:GQ:PL    0/1:13,16:37:99:474,0,240
19    44652748    rs3817595    C    T    2781.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5105;MQ=59.68;MQ0=0;QD=38.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426739    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2815,208,0
19    44652954    rs2293587    G    A    5690.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.57;SNPEFF_AMINO_ACID_CHANGE=V16I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44652924_44653050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF226;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426739    GT:AD:DP:GQ:PL    1/1:0,160:160:99:5691,424,0
19    44660967    rs12609635    A    G    4818.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9467;MQ=59.85;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=G266;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44660405_44664462;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF226;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426739    GT:AD:DP:GQ:PL    1/1:0,151:151:99:4819,385,0
19    44662274    rs35483237    T    TA    2623.71    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.116;DB;DP=151;FS=7.011;HRun=13;HaplotypeScore=789.484;IndelType=I;MQ=56.42;MQ0=0;MQRankSum=0.545;QD=17.38;ReadPosRankSum=0.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542402    GT:AD:DP:GQ:PL    1/1:35,95:151:99:2666,270,0
19    44663805    rs62117771    G    A    894.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF226;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542402    GT:AD:DP:GQ:PL    1/1:0,30:30:72.19:927,72,0
19    44890685    rs73039936    T    G    66.66    QDFilter2    AB=0.779;AC=1;AF=0.50;AN=2;BaseQRankSum=2.562;DB;DP=69;Dels=0.0;FS=11.265;HRun=0;HaplotypeScore=0.0;MQ=48.36;MQ0=3;MQRankSum=-3.39;QD=0.97;ReadPosRankSum=-0.194;SNPEFF_AMINO_ACID_CHANGE=G574;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44886479_44892264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF285;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330997    GT:AD:DP:GQ:PL    0/1:53,15:69:96.65:97,0,1727
19    44890697    rs1836280    A    G    1910.53    PASS    AB=0.225;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=80;Dels=0.0;FS=12.123;HRun=0;HaplotypeScore=0.5784;MQ=45.6;MQ0=3;MQRankSum=3.981;QD=23.88;ReadPosRankSum=0.006;SNPEFF_AMINO_ACID_CHANGE=H570;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44886479_44892264;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF285;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330997    GT:AD:DP:GQ:PL    0/1:18,62:80:99:1941,0,147
19    44890801    rs12610859    T    C    1508.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.0;MQ0=1;QD=31.43;SNPEFF_AMINO_ACID_CHANGE=R536G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44886479_44892264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF285;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330997    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1542,123,0
19    44891784    rs2571089    T    C    2664.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.72;MQ0=0;QD=37.0;SNPEFF_AMINO_ACID_CHANGE=N208S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44886479_44892264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF285;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330997    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2697,202,0
19    44892333    rs2571090    A    T    886.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.953;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.92;MQ0=0;MQRankSum=2.254;QD=35.46;ReadPosRankSum=-0.851;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF285;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253426    GT:AD:DP:GQ:PL    1/1:2,23:25:69.23:920,69,0
19    44896487    rs2571123    G    C    2083.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;QD=36.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF285;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253426    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2117,150,0
19    44901526    rs2722650    A    G    330.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.06;MQ0=0;MQRankSum=1.393;QD=33.04;ReadPosRankSum=-1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF285;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253426    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:363,27,0
19    44901557    rs2722651    A    G    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=14.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF285;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253426    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
19    44932614    rs185969631    G    A    388.26    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.268;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.595;QD=9.24;ReadPosRankSum=-0.622;SNPEFF_AMINO_ACID_CHANGE=S781F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44930426_44934717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF229;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291187    GT:AD:DP:GQ:PL    0/1:25,17:42:99:418,0,728
19    44932972    rs1434579    C    T    948.14    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.599;DB;DP=75;Dels=0.0;FS=1.949;HRun=0;HaplotypeScore=0.9734;MQ=59.69;MQ0=0;MQRankSum=0.435;QD=12.64;ReadPosRankSum=0.739;SNPEFF_AMINO_ACID_CHANGE=G662R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44930426_44934717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF229;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291187    GT:AD:DP:GQ:PL    0/1:41,34:75:99:978,0,1190
19    44933947    rs12151338    G    A    661.67    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.912;DB;DP=32;Dels=0.0;FS=4.561;HRun=0;HaplotypeScore=0.9665;MQ=59.28;MQ0=0;MQRankSum=-0.182;QD=20.68;ReadPosRankSum=0.547;SNPEFF_AMINO_ACID_CHANGE=R337C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44930426_44934717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF229;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291187    GT:AD:DP:GQ:PL    0/1:12,20:32:99:692,0,351
19    44934187    rs144097942    G    A    858.02    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=3.722;DB;DP=53;Dels=0.0;FS=8.494;HRun=1;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=-0.663;QD=16.19;ReadPosRankSum=0.387;SNPEFF_AMINO_ACID_CHANGE=R257C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44930426_44934717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF229;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291187    GT:AD:DP:GQ:PL    0/1:23,30:53:99:888,0,602
19    44934489    rs2571174    G    A    2837.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.57;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_AMINO_ACID_CHANGE=S156F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44930426_44934717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF229;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291187    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2871,223,0
19    44936245    rs2356889    A    G    97.94    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=8.9;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF229;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291187    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,262
19    44947050    rs204548    T    C    593.03    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.224;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.07;MQ0=0;MQRankSum=-0.458;QD=11.86;ReadPosRankSum=-0.416;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_44946998_44947208;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF229;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291187    GT:AD:DP:GQ:PL    0/1:26,24:50:99:623,0,772
19    44947184    rs204547    T    C    163.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.783;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=10.24;ReadPosRankSum=0.893;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_44946998_44947208;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF229;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291187    GT:AD:DP:GQ:PL    0/1:8,8:16:99:194,0,274
19    44968513    rs612890    C    G    452.23    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=0.022;DB;DP=46;Dels=0.0;FS=1.425;HRun=0;HaplotypeScore=1.8633;MQ=59.59;MQ0=0;MQRankSum=0.312;QD=9.83;ReadPosRankSum=-0.558;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,19:46:99:482,0,850
19    44976058    rs2571053    C    T    662.61    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.656;DB;DP=55;Dels=0.0;FS=1.115;HRun=0;HaplotypeScore=0.9665;MQ=53.81;MQ0=0;MQRankSum=1.434;QD=12.05;ReadPosRankSum=-1.213;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221327    GT:AD:DP:GQ:PL    0/1:31,24:55:99:693,0,1053
19    44977071    rs1897824    C    T    365.38    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.302;DB;DP=32;Dels=0.0;FS=3.477;HRun=0;HaplotypeScore=2.9765;MQ=52.95;MQ0=0;MQRankSum=0.62;QD=11.42;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221327    GT:AD:DP:GQ:PL    0/1:18,13:32:99:395,0,497
19    44977240    rs1897823    A    G    527.89    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=35;Dels=0.0;FS=1.311;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-1.964;QD=15.08;ReadPosRankSum=1.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221327    GT:AD:DP:GQ:PL    0/1:17,18:35:99:558,0,487
19    44981375    rs954314    T    C    689.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.661;DB;DP=54;Dels=0.0;FS=2.347;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.363;QD=12.77;ReadPosRankSum=-1.142;SNPEFF_AMINO_ACID_CHANGE=Q416;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44979861_44982363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391956    GT:AD:DP:GQ:PL    0/1:27,27:54:99:720,0,975
19    44981883    rs1897820    C    G    1085.05    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.527;DB;DP=82;Dels=0.0;FS=0.86;HRun=1;HaplotypeScore=1.7552;MQ=60.0;MQ0=0;MQRankSum=0.96;QD=13.23;ReadPosRankSum=0.221;SNPEFF_AMINO_ACID_CHANGE=C247S;SNPEFF_CODON_CHANGE=tGc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44979861_44982363;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391956    GT:AD:DP:GQ:PL    0/1:44,37:82:99:1115,0,1443
19    44983567    rs2253563    C    G    817.16    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.774;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.099;QD=14.86;ReadPosRankSum=-0.216;SNPEFF_AMINO_ACID_CHANGE=W64C;SNPEFF_CODON_CHANGE=tgG/tgC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_44983500_44983626;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391956    GT:AD:DP:GQ:PL    0/1:26,29:55:99:847,0,716
19    45001346    rs2571108    G    A    461.92    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.85;DB;DP=30;Dels=0.0;FS=1.468;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.062;QD=15.4;ReadPosRankSum=0.021;SNPEFF_AMINO_ACID_CHANGE=A41V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45001336_45001424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221327    GT:AD:DP:GQ:PL    0/1:14,16:30:99:492,0,391
19    45001619    rs2254344    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221327    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    45004042    rs12459496    T    C    194.74    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.174;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.215;QD=12.98;ReadPosRankSum=-0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221327    GT:AD:DP:GQ:PL    0/1:8,7:15:99:225,0,281
19    45004305    rs12977470    G    C    1534.44    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=3.089;DB;DP=124;Dels=0.0;FS=9.896;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.224;QD=12.37;ReadPosRankSum=0.214;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_45004250_45004574;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF180;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221327    GT:AD:DP:GQ:PL    0/1:68,56:124:99:1564,0,1799
19    45010056    rs13345032    G    A    199.19    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.72;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.058;QD=12.45;ReadPosRankSum=0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412211    GT:AD:DP:GQ:PL    0/1:9,7:16:99:229,0,292
19    45015596    rs1004605    T    G    262.29    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=20.18;ReadPosRankSum=-0.437;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    0/1:5,8:13:99:292,0,161
19    45016116    rs8100718    A    G    684.03    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8216;MQ=60.0;MQ0=0;MQRankSum=1.174;QD=11.21;ReadPosRankSum=0.111;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    0/1:37,24:61:99:714,0,990
19    45016990    rs5828200    CT    C    1605.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=2;HaplotypeScore=112.2456;IndelType=D;MQ=60.98;MQ0=0;QD=36.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1647,129,0
19    45017249    rs1465723    T    C    352.78    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.821;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.421;QD=11.38;ReadPosRankSum=-0.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    0/1:18,13:31:99:383,0,563
19    45017477    rs10706694    TA    T    226.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=53.0303;IndelType=D;MQ=58.46;MQ0=0;QD=28.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:268,21,0
19    45017486    rs4802229    T    C    90.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.731;QD=15.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    0/1:2,4:6:25.61:121,0,26
19    45024581    rs12982449    C    G    1152.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=28.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1186,99,0
19    45024875    rs12975863    T    C    1121.73    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.525;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.7068;MQ=55.85;MQ0=0;MQRankSum=1.109;QD=21.57;ReadPosRankSum=0.208;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    1/1:2,50:52:99:1155,105,0
19    45028169    rs7260180    C    T    957.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=35.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:990,75,0
19    45033379    rs71940010    GCA    G    116.87    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=114.9784;IndelType=D;MQ=55.6;MQ0=0;MQRankSum=-0.572;QD=5.31;ReadPosRankSum=-1.067;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=CEACAM20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316962    GT:AD:DP:GQ:PL    0/1:11,6:22:28.83:156,0,29
19    45117163    rs111463774    C    T    66.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.37;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402988    GT:AD:DP:GQ:PL    0/1:2,3:5:64.27:97,0,64
19    45121424    rs10412507    G    A    359.40    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=24;Dels=0.0;FS=11.02;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.025;QD=14.97;ReadPosRankSum=1.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402988    GT:AD:DP:GQ:PL    0/1:10,14:24:99:389,0,289
19    45126900    rs846856    T    C    295.18    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=16.4;ReadPosRankSum=-1.903;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402988    GT:AD:DP:GQ:PL    0/1:7,11:18:99:325,0,233
19    45126994    rs846857    A    G    1258.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.632;DB;DP=72;Dels=0.0;FS=3.608;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.201;QD=17.48;ReadPosRankSum=0.273;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF23;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402988    GT:AD:DP:GQ:PL    0/1:24,48:72:99:1289,0,713
19    45157113    rs71171278    A    AG    8104.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=180;FS=0.0;HRun=0;HaplotypeScore=465.5241;IndelType=I;MQ=59.77;MQ0=0;QD=45.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344956    GT:AD:DP:GQ:PL    1/1:5,174:180:99:8104,512,0
19    45157395    rs113578569    G    GCC    518.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=33.5165;IndelType=I;MQ=62.13;MQ0=0;QD=51.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344956    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:561,30,0
19    45162038    rs203710    A    G    1901.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_AMINO_ACID_CHANGE=I340M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45162010_45162365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406449    GT:AD:DP:GQ:PL    1/1:0,59:60:99:1934,138,0
19    45162189    rs35385129    C    A    479.65    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=3.323;DB;DP=43;Dels=0.0;FS=2.931;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.722;QD=11.15;ReadPosRankSum=0.854;SNPEFF_AMINO_ACID_CHANGE=R391S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45162010_45162365;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406449    GT:AD:DP:GQ:PL    0/1:24,19:43:99:510,0,662
19    45176028    rs35695969    C    T    346.92    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.032;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=13.34;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=Y72;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45175868_45176236;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358777    GT:AD:DP:GQ:PL    0/1:12,14:26:99:377,0,356
19    45184619    rs62119326    A    G    111.91    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.717;QD=10.17;ReadPosRankSum=-1.749;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358777    GT:AD:DP:GQ:PL    0/1:5,6:11:99:142,0,143
19    45184631    .    G    A    84.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.336;QD=8.44;ReadPosRankSum=0.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358777    GT:AD:DP:GQ:PL    0/1:5,5:10:99:114,0,145
19    45206532    rs2965167    G    A    180.26    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.067;QD=22.53;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396750    GT:AD:DP:GQ:PL    0/1:2,6:8:42.79:210,0,43
19    45208682    rs7248283    G    T    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396750    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:74,0,31
19    45211407    rs61744497    C    T    469.50    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.027;DB;DP=37;Dels=0.0;FS=7.118;HRun=0;HaplotypeScore=0.8667;MQ=59.38;MQ0=0;MQRankSum=-0.015;QD=12.69;ReadPosRankSum=-2.697;SNPEFF_AMINO_ACID_CHANGE=T405;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45211133_45211459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405314    GT:AD:DP:GQ:PL    0/1:20,17:37:99:499,0,589
19    45316372    rs2927475    T    C    233.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270233    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:267,21,0
19    45368320    rs419010    C    T    69.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252483    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
19    45375413    rs71352236    G    A    623.68    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.192;DB;DP=47;Dels=0.0;FS=9.686;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.805;QD=13.27;ReadPosRankSum=-1.079;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252483    GT:AD:DP:GQ:PL    0/1:24,23:47:99:654,0,739
19    45377334    rs393584    G    A    168.10    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.473;QD=10.51;ReadPosRankSum=0.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252483    GT:AD:DP:GQ:PL    0/1:10,6:16:99:198,0,303
19    45389224    rs283814    A    G    2156.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.276;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9838;MQ=59.49;MQ0=0;MQRankSum=-1.231;QD=26.63;ReadPosRankSum=-0.046;SNPEFF_AMINO_ACID_CHANGE=P409;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45389194_45389257;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252483    GT:AD:DP:GQ:PL    1/1:1,80:81:99:2190,136,0
19    45395619    rs2075650    A    G    3542.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.02;FS=0.0;HRun=2;HaplotypeScore=3.8229;MQ=59.58;MQ0=0;QD=32.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252483    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3543,271,0
19    45395714    rs157581    T    C    2636.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=32.55;SNPEFF_AMINO_ACID_CHANGE=F113;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45395650_45395717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252487    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2670,220,0
19    45395844    rs34095326    G    A    293.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252483    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:327,24,0
19    45396144    rs11556505    C    T    655.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=F131;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45396094_45396186;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252487    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:689,51,0
19    45396219    rs157582    C    T    253.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVRL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252483    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:286,24,0
19    45404691    rs405697    A    G    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252487    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    45410002    rs769449    G    A    270.92    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.489;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.63;MQ0=0;MQRankSum=1.61;QD=15.94;ReadPosRankSum=-0.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOMM40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252487    GT:AD:DP:GQ:PL    0/1:7,10:17:99:301,0,208
19    45411941    rs429358    T    C    59.86    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.727;QD=11.97;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=C130R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45411790_45412650;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252486    GT:AD:DP:GQ:PL    0/1:1,4:5:23.22:90,0,23
19    45422160    rs12721051    C    G    71.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=14.22;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252491    GT:AD:DP:GQ:PL    0/1:2,3:5:50.89:101,0,51
19    45422561    rs1064725    T    G    810.08    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.995;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=58.6;MQ0=0;MQRankSum=0.131;QD=16.2;ReadPosRankSum=0.734;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252491    GT:AD:DP:GQ:PL    0/1:22,27:50:99:840,0,757
19    45430280    rs5112    C    G    148.91    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.05;MQ0=0;MQRankSum=0.0;QD=13.54;ReadPosRankSum=0.678;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_45430060_45430290;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011481.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000507983    GT:AD:DP:GQ:PL    0/1:4,7:11:92.70:179,0,93
19    45434145    rs192165948    T    C    735.81    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.987;DB;DP=53;Dels=0.0;FS=3.862;HRun=0;HaplotypeScore=0.9987;MQ=59.13;MQ0=0;MQRankSum=-0.062;QD=13.88;ReadPosRankSum=-0.187;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011481.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000507983    GT:AD:DP:GQ:PL    0/1:28,25:53:99:766,0,838
19    45476422    rs204481    T    C    1668.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=58.71;MQ0=0;QD=30.89;SNPEFF_AMINO_ACID_CHANGE=A74;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45476344_45476467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541297    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1701,135,0
19    45477910    rs67681160    CT    C    382.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=4;HaplotypeScore=55.8652;IndelType=D;MQ=59.5;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:1,12:13:36.11:424,36,0
19    45477951    rs204479    T    C    183.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=22.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,7:8:18.05:216,18,0
19    45488434    rs204472    A    G    509.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,19:19:45.13:543,45,0
19    45488567    rs204471    T    C    736.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,24:24:63.17:770,63,0
19    45489548    rs80325448    A    AG    272.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=13.4911;IndelType=I;MQ=63.02;MQ0=0;QD=38.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:315,21,0
19    45490285    rs204469    A    G    411.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:444,39,0
19    45490636    rs204468    T    C    1415.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5367;MQ=58.48;MQ0=0;QD=28.89;SNPEFF_AMINO_ACID_CHANGE=G229;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45490437_45490681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546079    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1449,123,0
19    45491174    rs204467    A    G    176.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:209,18,0
19    45493635    rs875255    C    G    2650.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=59.48;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2683,226,0
19    45494247    rs11405080    A    AC    595.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=2;HaplotypeScore=27.7499;IndelType=I;MQ=59.39;MQ0=0;QD=39.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:637,45,0
19    45494349    rs75956550    TC    T    441.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=38.7326;IndelType=D;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337392    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:484,39,0
19    45496303    rs9193    T    C    445.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLPTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347493    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:479,36,0
19    45506732    rs71903620;rs72012283    CAAAAA    C    66.32    QDFilter2    AB=0.701;AC=1;AF=0.50;AN=2;BaseQRankSum=1.516;DB;DP=54;FS=0.0;HRun=25;HaplotypeScore=415.6273;IndelType=D;MQ=34.83;MQ0=0;MQRankSum=0.424;QD=1.23;ReadPosRankSum=0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221452    GT:AD:DP:GQ:PL    0/1:31,11:54:99:105,0,297
19    45506772    rs7251460    T    A    2022.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.7116;MQ=45.63;MQ0=0;QD=20.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221452    GT:AD:DP:GQ:PL    1/1:2,98:101:99:2055,166,0
19    45513146    rs67047590    GGCCTTC    G    1262.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=119.18;IndelType=D;MQ=33.46;MQ0=0;QD=74.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221452    GT:AD:DP:GQ:PL    1/1:0,17:17:51.18:1304,51,0
19    45528799    rs2288918    T    C    446.78    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.778;DB;DP=37;Dels=0.0;FS=1.547;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-0.623;QD=12.08;ReadPosRankSum=-0.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221452    GT:AD:DP:GQ:PL    0/1:19,18:37:99:477,0,592
19    45532009    rs12609547    G    T    170.57    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=14.21;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000510184    GT:AD:DP:GQ:PL    0/1:5,7:12:99:201,0,170
19    45535672    rs147163954    CA    C    120.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=12;HaplotypeScore=20.9992;IndelType=D;MQ=60.0;MQ0=0;QD=15.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221452    GT:AD:DP:GQ:PL    1/1:1,7:8:20.92:163,21,0
19    45536036    rs10424046    C    G    111.61    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=15.94;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RELB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221452    GT:AD:DP:GQ:PL    0/1:2,5:7:44.22:142,0,44
19    45561063    rs4803794    A    G    1871.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=K112E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45561008_45561156;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLASRP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391953    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1904,144,0
19    45571781    rs10445571    T    C    327.52    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=59.07;MQ0=0;MQRankSum=0.232;QD=13.1;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF296;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303809    GT:AD:DP:GQ:PL    0/1:12,13:25:99:358,0,312
19    45574755    rs28673961    G    C    220.75    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=14;Dels=0.0;FS=4.472;HRun=0;HaplotypeScore=1.7005;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=15.77;ReadPosRankSum=-1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLASRP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221455    GT:AD:DP:GQ:PL    0/1:5,9:14:99:251,0,174
19    45593289    rs76007960    G    T    646.90    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.081;DB;DP=48;Dels=0.0;FS=7.116;HRun=1;HaplotypeScore=0.9989;MQ=59.03;MQ0=0;MQRankSum=-0.417;QD=13.48;ReadPosRankSum=-0.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270257    GT:AD:DP:GQ:PL    0/1:26,22:48:99:677,0,915
19    45596886    rs75350052    C    T    34.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=4.92;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GEMIN7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270257    GT:AD:DP:GQ:PL    0/1:4,3:7:64.41:64,0,134
19    45643890    rs2041262    T    C    47.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=7.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221462    GT:AD:DP:GQ:PL    0/1:2,4:6:70.37:77,0,70
19    45645553    rs112401916    G    A    38.30    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.754;QD=4.79;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LRRC68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000544069    GT:AD:DP:GQ:PL    0/1:5,3:8:68.29:68,0,99
19    45668292    rs77838861    C    T    117.55    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DB;DP=13;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=9.04;ReadPosRankSum=0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000006275    GT:AD:DP:GQ:PL    0/1:7,6:13:99:148,0,187
19    45681560    rs7254936    T    C    527.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=23.96;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BLOC1S3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433642    GT:AD:DP:GQ:PL    1/1:0,22:22:51.11:560,51,0
19    45716678    rs346740    G    C    398.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252482    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:432,33,0
19    45728059    rs10411314    T    C    77.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.42;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=N173D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45728036_45728171;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252482    GT:AD:DP:GQ:PL    0/1:2,3:5:29.72:107,0,30
19    45728123    rs10410003    C    T    195.60    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.48;QD=17.78;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=P151;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45728036_45728171;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252482    GT:AD:DP:GQ:PL    0/1:3,8:11:60.38:226,0,60
19    45731564    rs56187099    G    A    253.20    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.912;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=12.66;ReadPosRankSum=-0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EXOC3L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252482    GT:AD:DP:GQ:PL    0/1:11,9:20:99:283,0,394
19    45769575    rs2240672    G    A    1114.53    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.445;DB;DP=82;Dels=0.0;FS=6.469;HRun=0;HaplotypeScore=1.7621;MQ=59.44;MQ0=0;MQRankSum=-0.904;QD=13.59;ReadPosRankSum=2.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262891    GT:AD:DP:GQ:PL    0/1:48,34:82:99:1145,0,1590
19    45781916    rs141826060    C    A    444.47    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=0.178;DB;DP=33;Dels=0.0;FS=6.463;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.534;QD=13.47;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262891    GT:AD:DP:GQ:PL    0/1:17,16:33:99:474,0,530
19    45801018    rs173179    T    C    100.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=25.17;SNPEFF_AMINO_ACID_CHANGE=R561;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45800934_45801212;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262891    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:133,12,0
19    45801579    rs67795374    GGGTCTGTGCGT    G    515.40    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=128.5033;IndelType=D;MQ=49.26;MQ0=0;MQRankSum=-1.813;QD=39.65;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262891    GT:AD:DP:GQ:PL    0/1:7,6:13:99:554,0,998
19    45803008    rs73570398    G    A    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=3.88;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MARK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262891    GT:AD:DP:GQ:PL    0/1:6,3:9:64.93:65,0,186
19    45810035    rs4884    A    G    4432.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7798;MQ=59.28;MQ0=0;QD=27.53;SNPEFF_AMINO_ACID_CHANGE=I373;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45809672_45810186;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221476    GT:AD:DP:GQ:PL    1/1:0,161:161:99:4433,382,0
19    45815248    rs10402747    T    C    697.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221476    GT:AD:DP:GQ:PL    1/1:0,26:26:60.18:730,60,0
19    45818527    rs364755    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221476    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    45818581    rs365065    G    A    70.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221476    GT:AD:DP:GQ:PL    1/1:0,3:3:9:103,9,0
19    45818835    rs1133190    A    G    425.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_AMINO_ACID_CHANGE=P123;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45818723_45818855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CKM;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221476    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:459,36,0
19    45850933    rs3843743    A    G    41.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391941    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    45856468    rs238417    G    C    246.16    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=3.54;DB;DP=27;Dels=0.0;FS=1.599;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=9.12;ReadPosRankSum=0.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391946    GT:AD:DP:GQ:PL    0/1:17,10:27:99:276,0,469
19    45857820    rs238414    G    A    72.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.1;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391940    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,103
19    45857867    rs238413    A    G    345.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=28.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391940    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:378,33,0
19    45858246    rs2070831    G    A    114.71    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.55;MQ0=0;MQRankSum=-1.246;QD=7.17;ReadPosRankSum=0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391940    GT:AD:DP:GQ:PL    0/1:11,5:16:99:145,0,365
19    45868006    rs238405    A    T    155.51    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=3.802;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=17.28;ReadPosRankSum=-0.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221481    GT:AD:DP:GQ:PL    0/1:2,7:9:61.92:186,0,62
19    45868309    rs238406    T    G    108.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=9.83;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=R106;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45868300_45868416;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391941    GT:AD:DP:GQ:PL    0/1:6,5:11:99:138,0,193
19    45868478    rs238407    T    A    80.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.49;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221481    GT:AD:DP:GQ:PL    0/1:2,4:6:69.83:111,0,70
19    45872036    rs1799783    C    T    136.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.581;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.323;QD=9.78;ReadPosRankSum=-1.097;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221481    GT:AD:DP:GQ:PL    0/1:8,6:14:99:167,0,239
19    45911309    rs35708119    C    CA    555.59    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=3.932;DB;DP=48;FS=0.0;HRun=9;HaplotypeScore=264.1877;IndelType=I;MQ=60.62;MQ0=0;MQRankSum=0.286;QD=11.57;ReadPosRankSum=-0.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3EAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309424    GT:AD:DP:GQ:PL    0/1:25,23:48:99:595,0,460
19    45911330    rs2013521    T    A    686.55    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.333;DB;DP=67;Dels=0.0;FS=0.0;HRun=10;HaplotypeScore=4.202;MQ=60.28;MQ0=0;MQRankSum=0.395;QD=10.25;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3EAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309424    GT:AD:DP:GQ:PL    0/1:32,35:67:99:717,0,1004
19    45912002    rs735482    A    C    813.15    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.685;DB;DP=82;Dels=0.0;FS=1.977;HRun=0;HaplotypeScore=1.7234;MQ=59.72;MQ0=0;MQRankSum=1.021;QD=9.92;ReadPosRankSum=-0.745;SNPEFF_AMINO_ACID_CHANGE=K259T;SNPEFF_CODON_CHANGE=aAa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45911391_45914024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3EAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309424    GT:AD:DP:GQ:PL    0/1:49,33:82:99:843,0,1563
19    45912343    rs762562    A    G    805.80    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.089;DB;DP=60;Dels=0.0;FS=3.505;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-1.139;QD=13.43;ReadPosRankSum=-1.583;SNPEFF_AMINO_ACID_CHANGE=K373E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45911391_45914024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3EAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309424    GT:AD:DP:GQ:PL    0/1:29,31:60:99:836,0,990
19    45912406    rs2336219    G    A    824.09    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=59;Dels=0.0;FS=5.136;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.144;QD=13.97;ReadPosRankSum=1.933;SNPEFF_AMINO_ACID_CHANGE=D394N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45911391_45914024;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3EAP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309424    GT:AD:DP:GQ:PL    0/1:29,30:59:99:854,0,903
19    45912750    rs118178942    G    A    108.97    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=13;Dels=0.0;FS=3.282;HRun=1;HaplotypeScore=0.0;MQ=57.84;MQ0=0;MQRankSum=1.134;QD=8.38;ReadPosRankSum=-1.461;SNPEFF_AMINO_ACID_CHANGE=Q508;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45911391_45914024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD3EAP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000309424    GT:AD:DP:GQ:PL    0/1:8,5:13:99:139,0,252
19    45913093    rs1007616    T    C    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013807    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    45919955    rs16979802    G    C    81.59    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.358;QD=11.66;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013807    GT:AD:DP:GQ:PL    0/1:4,3:7:67.36:112,0,67
19    45920264    rs3212967    G    A    142.95    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=20.42;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013807    GT:AD:DP:GQ:PL    0/1:2,5:7:24.17:173,0,24
19    45922323    rs3212961    G    T    34.36    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.73;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000013807    GT:AD:DP:GQ:PL    0/1:4,2:6:64.35:64,0,120
19    45972039    rs2282696    A    C    233.46    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.344;DB;DP=32;Dels=0.0;FS=3.713;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.506;QD=7.3;ReadPosRankSum=0.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERCC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423698    GT:AD:DP:GQ:PL    0/1:20,12:32:99:263,0,558
19    45989473    rs73567088    G    T    170.84    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=21.36;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245923    GT:AD:DP:GQ:PL    0/1:2,6:8:54.56:201,0,55
19    45992381    rs6509218    T    C    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401705    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
19    45997261    rs10421736    T    A    233.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.282;DB;DP=26;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.923;QD=8.97;ReadPosRankSum=-1.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401705    GT:AD:DP:GQ:PL    0/1:13,13:26:99:263,0,441
19    45997347    rs12609601    T    C    1384.30    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=4.886;DB;DP=91;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.9159;MQ=59.75;MQ0=0;MQRankSum=1.433;QD=15.21;ReadPosRankSum=-0.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401705    GT:AD:DP:GQ:PL    0/1:46,45:91:99:1414,0,1380
19    45998247    rs10401270    A    G    585.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.41;DB;DP=50;Dels=0.0;FS=4.055;HRun=1;HaplotypeScore=1.7074;MQ=59.54;MQ0=0;MQRankSum=-0.43;QD=11.71;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=S32;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_45997784_45998263;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245923    GT:AD:DP:GQ:PL    0/1:25,25:50:99:616,0,783
19    46002456    rs3745821    G    T    112.21    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.293;DB;DP=19;Dels=0.0;FS=5.167;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.708;QD=5.91;ReadPosRankSum=-0.439;SNPEFF_AMINO_ACID_CHANGE=P164;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46001865_46003324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1N;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324688    GT:AD:DP:GQ:PL    0/1:10,9:19:99:142,0,316
19    46003066    rs34138946    T    G    60.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=8.61;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396734    GT:AD:DP:GQ:PL    0/1:4,3:7:90.26:90,0,133
19    46003068    rs35446288    A    G    238.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396734    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
19    46004006    rs60969039    G    A    31.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPM1N;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451287    GT:AD:DP:GQ:PL    0/1:3,2:5:61.24:61,0,108
19    46025388    rs2301284    G    A    424.33    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.046;DB;DP=37;Dels=0.0;FS=1.445;HRun=0;HaplotypeScore=0.7887;MQ=59.5;MQ0=0;MQRankSum=0.38;QD=11.47;ReadPosRankSum=0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245932    GT:AD:DP:GQ:PL    0/1:19,18:37:99:454,0,570
19    46026970    rs11880111    T    A    193.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.585;DB;DP=20;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.193;QD=9.66;ReadPosRankSum=-1.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323060    GT:AD:DP:GQ:PL    0/1:12,8:20:99:223,0,396
19    46027752    rs4802260    C    T    1639.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=57.66;MQ0=0;QD=27.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323060    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1673,129,0
19    46029187    rs56216986    T    C    639.35    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=61;Dels=0.0;FS=2.793;HRun=0;HaplotypeScore=0.9332;MQ=59.69;MQ0=0;MQRankSum=-1.312;QD=10.48;ReadPosRankSum=1.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323060    GT:AD:DP:GQ:PL    0/1:36,25:61:99:669,0,1159
19    46032124    rs73568948    T    C    208.72    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.978;QD=14.91;ReadPosRankSum=-0.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245932    GT:AD:DP:GQ:PL    0/1:5,9:14:99:239,0,124
19    46032735    rs149252540    CAG    C    1334.20    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=5.304;DB;DP=72;FS=3.959;HRun=0;HaplotypeScore=268.2607;IndelType=D;MQ=60.75;MQ0=0;MQRankSum=0.727;QD=18.53;ReadPosRankSum=0.559;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245932    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1373,0,1938
19    46032841    rs12971437    G    C    151.67    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=18.96;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VASP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245932    GT:AD:DP:GQ:PL    0/1:1,7:8:16.74:182,0,17
19    46057081    rs3826860    A    G    138.32    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.886;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.184;QD=7.28;ReadPosRankSum=0.307;SNPEFF_AMINO_ACID_CHANGE=A24;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46056142_46057169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544371    GT:AD:DP:GQ:PL    0/1:13,6:19:99:168,0,431
19    46094597    rs3745820    G    A    686.39    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.264;DB;DP=52;Dels=0.0;FS=1.082;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.769;QD=13.2;ReadPosRankSum=0.751;SNPEFF_AMINO_ACID_CHANGE=G176;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46093025_46095955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323040    GT:AD:DP:GQ:PL    0/1:27,25:52:99:716,0,853
19    46118127    rs3816046    C    T    77.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.27;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399594    GT:AD:DP:GQ:PL    0/1:1,3:4:24.09:107,0,24
19    46119867    rs2241722    C    A    49.72    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=4.97;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245925    GT:AD:DP:GQ:PL    0/1:7,3:10:79.71:80,0,243
19    46121020    rs12985660    T    C    54.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=5.47;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245925    GT:AD:DP:GQ:PL    0/1:7,3:10:84.68:85,0,263
19    46127918    rs28365786    A    G    87.67    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=5.84;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245925    GT:AD:DP:GQ:PL    0/1:8,7:15:99:118,0,260
19    46133251    rs7251952    C    T    694.72    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=44;Dels=0.0;FS=2.649;HRun=0;HaplotypeScore=1.8661;MQ=60.0;MQ0=0;MQRankSum=1.269;QD=15.79;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S188;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46133209_46133304;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245925    GT:AD:DP:GQ:PL    0/1:21,23:44:99:725,0,561
19    46133256    rs7252175    G    A    719.38    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.205;DB;DP=44;Dels=0.0;FS=4.388;HRun=1;HaplotypeScore=1.8661;MQ=60.0;MQ0=0;MQRankSum=0.45;QD=16.35;ReadPosRankSum=-0.937;SNPEFF_AMINO_ACID_CHANGE=L187F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46133209_46133304;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245925    GT:AD:DP:GQ:PL    0/1:20,24:44:99:749,0,554
19    46141692    rs138562379    G    A    635.08    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.094;DB;DP=49;Dels=0.0;FS=2.553;HRun=1;HaplotypeScore=1.9661;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=12.96;ReadPosRankSum=1.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245925    GT:AD:DP:GQ:PL    0/1:25,24:49:99:665,0,797
19    46141845    rs12151009    T    C    761.61    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.341;DB;DP=49;Dels=0.0;FS=4.593;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.252;QD=15.54;ReadPosRankSum=-1.417;SNPEFF_AMINO_ACID_CHANGE=M180V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46141763_46141892;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EML2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536630    GT:AD:DP:GQ:PL    0/1:22,27:49:99:792,0,656
19    46180150    rs4803846    A    G    156.35    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.811;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.093;QD=12.03;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GIPR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263281    GT:AD:DP:GQ:PL    0/1:7,6:13:99:186,0,179
19    46191021    rs2075142    A    G    448.99    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.021;DB;DP=30;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.8455;MQ=59.23;MQ0=0;MQRankSum=-0.603;QD=14.97;ReadPosRankSum=2.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342669    GT:AD:DP:GQ:PL    0/1:14,16:30:99:479,0,408
19    46195051    rs71338793    G    GC    1729.95    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.534;DB;DP=155;FS=1.753;HRun=8;HaplotypeScore=391.7589;IndelType=I;MQ=60.02;MQ0=0;MQRankSum=-1.747;QD=11.16;ReadPosRankSum=-0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342669    GT:AD:DP:GQ:PL    0/1:87,67:155:99:1769,0,1598
19    46195410    rs10426987    A    G    123.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPCTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000012049    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
19    46204938    rs4803847    C    T    860.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=37.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPCTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000012049    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:893,66,0
19    46205050    rs4803848    T    C    2646.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=58.88;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPCTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000012049    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2680,202,0
19    46206098    rs62111730    G    A    1357.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPCTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000012049    GT:AD:DP:GQ:PL    1/1:2,48:50:99:1391,105,0
19    46206262    rs17850756    G    A    1416.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=34.54;SNPEFF_AMINO_ACID_CHANGE=L274;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46206162_46207240;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=QPCTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000366382    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1449,111,0
19    46216110    .    G    A    218.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=57.16;MQ0=0;MQRankSum=0.412;QD=14.57;ReadPosRankSum=0.53;SNPEFF_AMINO_ACID_CHANGE=S215F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46213887_46216831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO46;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317683    GT:AD:DP:GQ:PL    0/1:6,9:15:99:249,0,130
19    46262286    rs725660    C    A    540.81    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=35;Dels=0.0;FS=1.311;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.908;QD=15.45;ReadPosRankSum=0.479;SNPEFF_AMINO_ACID_CHANGE=T388N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46262136_46262291;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC074212.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457052    GT:AD:DP:GQ:PL    0/1:17,18:35:99:571,0,499
19    46264963    rs12982642    C    T    665.78    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.346;DB;DP=44;Dels=0.0;FS=2.649;HRun=0;HaplotypeScore=1.5115;MQ=59.48;MQ0=0;MQRankSum=0.924;QD=15.13;ReadPosRankSum=1.232;SNPEFF_AMINO_ACID_CHANGE=D424;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46264937_46264988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC074212.3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457052    GT:AD:DP:GQ:PL    0/1:19,25:44:99:696,0,494
19    46268902    rs2341097    C    T    830.24    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=2.281;DB;DP=56;Dels=0.0;FS=12.755;HRun=0;HaplotypeScore=1.5226;MQ=59.59;MQ0=0;MQRankSum=-0.412;QD=14.83;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=V693M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46268044_46269369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIX5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317578    GT:AD:DP:GQ:PL    0/1:27,29:56:99:860,0,734
19    46269313    rs2014377    G    C    73.79    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.04;MQ0=0;MQRankSum=-0.731;QD=12.3;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=L556V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46268044_46269369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIX5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317578    GT:AD:DP:GQ:PL    0/1:1,5:6:29.72:104,0,30
19    46282890    rs2070737    A    T    209.85    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.288;DB;DP=20;Dels=0.0;FS=8.82;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.489;QD=10.49;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMWD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270223    GT:AD:DP:GQ:PL    0/1:9,11:20:99:240,0,160
19    46289503    rs8109951    C    T    236.55    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.168;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;MQRankSum=0.178;QD=9.46;ReadPosRankSum=-0.32;SNPEFF_AMINO_ACID_CHANGE=P417;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46288852_46290129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMWD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270223    GT:AD:DP:GQ:PL    0/1:12,13:25:99:267,0,390
19    46313825    rs10407137    A    T    2188.83    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.335;DB;DP=181;Dels=0.0;FS=1.943;HRun=0;HaplotypeScore=2.5749;MQ=59.87;MQ0=0;MQRankSum=-0.409;QD=12.03;ReadPosRankSum=0.257;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    0/1:102,79:181:99:2219,0,3103
19    46317709    rs74450753    G    C    189.93    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=18.99;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    0/1:3,7:10:97.52:220,0,98
19    46318963    rs3810331    C    A    252.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:285,21,0
19    46326200    rs12976060    A    G    78.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
19    46327166    rs11671524    G    A    144.48    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.665;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.03;MQ0=0;MQRankSum=0.805;QD=6.02;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    0/1:18,6:24:99:174,0,547
19    46327185    rs7252416    G    C    690.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:723,57,0
19    46327209    rs11284049    CT    C    425.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=86.5659;IndelType=D;MQ=58.2;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:1,12:13:36.12:468,36,0
19    46328228    rs8110344    G    A    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
19    46329438    rs7246155    G    A    170.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
19    46331302    rs4239535    C    G    342.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:375,27,0
19    46332194    rs3745929    C    T    412.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:446,33,0
19    46333632    rs4516331    G    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    46338492    rs7256192    G    A    338.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.664;DB;DP=24;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.318;QD=14.11;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    0/1:12,12:24:99:369,0,421
19    46347542    rs10420834    G    T    62.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.91;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    0/1:6,3:9:92.14:92,0,227
19    46352203    rs2303013    C    T    346.77    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=28;Dels=0.0;FS=3.08;HRun=1;HaplotypeScore=1.7074;MQ=60.0;MQ0=0;MQRankSum=-0.673;QD=12.38;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    0/1:16,12:28:99:377,0,534
19    46357313    rs11670136    T    C    58.15    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=5.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYMPK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245934    GT:AD:DP:GQ:PL    0/1:7,4:11:88.15:88,0,264
19    46376217    rs3810327    C    A    650.51    PASS    AB=0.206;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.748;DB;DP=34;Dels=0.0;FS=1.922;HRun=3;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=-0.169;QD=19.13;ReadPosRankSum=-0.652;SNPEFF_AMINO_ACID_CHANGE=P318;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46375333_46377054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302177    GT:AD:DP:GQ:PL    0/1:7,27:34:99:681,0,168
19    46387344    rs11550348    G    A    322.04    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.007;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=0.163;QD=20.13;ReadPosRankSum=0.271;SNPEFF_AMINO_ACID_CHANGE=F563;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46386866_46389376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302165    GT:AD:DP:GQ:PL    0/1:6,10:16:99:352,0,200
19    46387503    rs3745926    T    C    193.72    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.666;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-2.177;QD=10.2;ReadPosRankSum=-0.044;SNPEFF_AMINO_ACID_CHANGE=L510;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46386866_46389376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF2BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302165    GT:AD:DP:GQ:PL    0/1:8,11:19:99:224,0,210
19    46417625    rs142962668    A    G    153.93    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.058;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=1.331;QD=10.26;ReadPosRankSum=-0.637;SNPEFF_AMINO_ACID_CHANGE=H109;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46416475_46418036;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NANOS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341294    GT:AD:DP:GQ:PL    0/1:8,7:15:99:184,0,244
19    46443739    rs28742045    T    G    121.89    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=16;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=0.5784;MQ=58.55;MQ0=0;MQRankSum=0.597;QD=7.62;ReadPosRankSum=-1.139;SNPEFF_AMINO_ACID_CHANGE=A287;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46442771_46444203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOVA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263257    GT:AD:DP:GQ:PL    0/1:10,6:16:99:152,0,327
19    46443886    rs1047061    C    A    105.85    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=8;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.72;QD=13.23;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=L238;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46442771_46444203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOVA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263257    GT:AD:DP:GQ:PL    0/1:3,5:8:37.26:136,0,37
19    46456764    rs11672647    G    T    69.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.98;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOVA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263257    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:100,0,68
19    46498827    rs746401    G    A    166.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-0.573;QD=18.5;ReadPosRankSum=-2.054;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263284    GT:AD:DP:GQ:PL    0/1:3,6:9:91.36:197,0,91
19    46498835    rs55951953    C    T    169.95    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-1.58;QD=16.99;ReadPosRankSum=-1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263284    GT:AD:DP:GQ:PL    0/1:3,7:10:70.16:200,0,70
19    46498899    rs930227    C    T    99.33    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.731;QD=16.56;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263284    GT:AD:DP:GQ:PL    0/1:1,5:6:18.39:129,0,18
19    46506203    rs12608903    C    G    182.62    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=14.05;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263284    GT:AD:DP:GQ:PL    0/1:6,7:13:99:213,0,182
19    46511548    rs2287305    T    C    401.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=28.67;SNPEFF_AMINO_ACID_CHANGE=H180;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46511398_46511559;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC61;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536603    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:434,33,0
19    46521072    rs12461346    G    A    79.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.88;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PGLYRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008938    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
19    46543249    rs756401    T    C    534.43    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.178;DB;DP=43;Dels=0.0;FS=6.527;HRun=0;HaplotypeScore=0.9993;MQ=58.92;MQ0=0;MQRankSum=0.592;QD=12.43;ReadPosRankSum=-0.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377697    GT:AD:DP:GQ:PL    0/1:22,21:43:99:564,0,685
19    46627592    rs2287307    G    A    549.38    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.173;DB;DP=38;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.2434;MQ=59.39;MQ0=0;MQRankSum=1.303;QD=14.46;ReadPosRankSum=-1.272;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341415    GT:AD:DP:GQ:PL    0/1:16,22:38:99:579,0,526
19    46664400    rs10408162    A    G    312.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=28.42;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377693    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:346,27,0
19    46733409    rs75105417    G    A    1524.70    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=1.621;DB;DP=96;Dels=0.0;FS=1.677;HRun=0;HaplotypeScore=3.6926;MQ=58.3;MQ0=0;MQRankSum=0.192;QD=15.88;ReadPosRankSum=0.214;SNPEFF_AMINO_ACID_CHANGE=G24R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46733365_46733418;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000437936    GT:AD:DP:GQ:PL    0/1:43,53:96:99:1555,0,1318
19    46733912    rs2286802    A    G    431.21    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.696;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=-0.58;QD=19.6;ReadPosRankSum=0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437936    GT:AD:DP:GQ:PL    0/1:8,14:22:99:461,0,182
19    46733916    rs2286803    G    A    427.12    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;MQRankSum=1.031;QD=21.36;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGFL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437936    GT:AD:DP:GQ:PL    0/1:6,14:20:99:457,0,177
19    46811766    rs759298    A    G    96.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524533    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
19    46811984    rs2311054    A    G    324.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=21.65;SNPEFF_AMINO_ACID_CHANGE=T102;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46811920_46812032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244303    GT:AD:DP:GQ:PL    1/1:0,15:15:27.09:358,27,0
19    46812682    rs4803926    T    C    168.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526506    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:201,15,0
19    46815297    rs8101216    T    C    7639.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=220;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5367;MQ=59.41;MQ0=0;QD=34.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526506    GT:AD:DP:GQ:PL    1/1:0,220:220:99:7639,572,0
19    46815499    rs8101480    T    C    4908.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5884;MQ=59.05;MQ0=0;QD=28.71;SNPEFF_AMINO_ACID_CHANGE=D192;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46815426_46815502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457865    GT:AD:DP:GQ:PL    1/1:0,171:171:99:4909,418,0
19    46815705    rs3752207    A    C    1740.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=Y227S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46815605_46815739;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457865    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1774,132,0
19    46824859    rs10409837    C    T    123.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244302    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:156,12,0
19    46824904    rs10411556    T    A    198.26    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=24.78;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244302    GT:AD:DP:GQ:PL    0/1:2,6:8:59.80:228,0,60
19    46842633    rs115674191    G    A    63.13    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=7.01;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HIF3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420102    GT:AD:DP:GQ:PL    0/1:6,3:9:93.12:93,0,177
19    46857286    rs2075144    G    A    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000012443    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    46887007    rs1024781    G    C    1089.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527193    GT:AD:DP:GQ:PL    1/1:0,32:33:87.27:1122,87,0
19    46890160    rs2075145    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527193    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    46890247    rs58701793    G    C    67.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.64;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527193    GT:AD:DP:GQ:PL    0/1:4,3:7:97.49:97,0,130
19    46892111    rs759290    C    T    33.86    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.64;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467502    GT:AD:DP:GQ:PL    0/1:4,2:6:63.85:64,0,106
19    46893238    rs759291    A    C    1508.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467502    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1542,117,0
19    46893465    rs2311213    A    G    804.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467502    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:838,66,0
19    46971773    rs45575940    T    G    381.56    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.844;DB;DP=58;Dels=0.0;FS=2.672;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.845;QD=6.58;ReadPosRankSum=-0.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417103    GT:AD:DP:GQ:PL    0/1:41,17:58:99:412,0,1321
19    46973981    rs4803960    G    A    493.04    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.693;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.116;QD=12.03;ReadPosRankSum=1.274;SNPEFF_AMINO_ACID_CHANGE=A104;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46972990_46974371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313683    GT:AD:DP:GQ:PL    0/1:23,18:41:99:523,0,601
19    46974233    rs3826851    G    A    643.24    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.792;DB;DP=50;Dels=0.0;FS=8.002;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-1.495;QD=12.86;ReadPosRankSum=-0.44;SNPEFF_AMINO_ACID_CHANGE=D20;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_46972990_46974371;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313683    GT:AD:DP:GQ:PL    0/1:28,22:50:99:673,0,898
19    46974306    rs12978825    A    C    372.37    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.076;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.166;QD=9.8;ReadPosRankSum=-1.468;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_46972990_46974371;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313683    GT:AD:DP:GQ:PL    0/1:24,14:38:99:402,0,729
19    46974307    rs3826852    C    T    648.10    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.802;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.772;QD=16.62;ReadPosRankSum=1.377;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_46972990_46974371;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313683    GT:AD:DP:GQ:PL    0/1:15,24:39:99:678,0,414
19    46974324    rs3826853    A    G    331.31    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.755;QD=10.04;ReadPosRankSum=-0.055;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_46972990_46974371;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMAL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313683    GT:AD:DP:GQ:PL    0/1:20,13:33:99:361,0,678
19    46974399    rs3826854    C    G    106.45    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.246;QD=9.68;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMAL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313683    GT:AD:DP:GQ:PL    0/1:7,4:11:99:136,0,175
19    47030432    rs3745795    T    C    67.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC011551.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414155    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:99,9,0
19    47105365    .    G    A    142.90    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=20.41;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CALM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291295    GT:AD:DP:GQ:PL    0/1:2,5:7:61.34:173,0,61
19    47109011    rs3729510    T    C    298.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.489;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.311;QD=16.57;ReadPosRankSum=-1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CALM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291295    GT:AD:DP:GQ:PL    0/1:8,10:18:99:328,0,201
19    47111663    rs3729760    T    C    655.71    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.201;QD=17.26;ReadPosRankSum=0.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CALM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291295    GT:AD:DP:GQ:PL    0/1:15,23:38:99:686,0,502
19    47112648    rs10113    T    C    46.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=23.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CALM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391918    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    47124714    rs2229129    T    G    556.24    PASS    AB=0.276;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.074;DB;DP=29;Dels=0.0;FS=12.018;HRun=1;HaplotypeScore=1.9732;MQ=60.0;MQ0=0;MQRankSum=0.415;QD=19.18;ReadPosRankSum=-0.903;SNPEFF_AMINO_ACID_CHANGE=S328;SNPEFF_CODON_CHANGE=tcA/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47123726_47124929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGIR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291294    GT:AD:DP:GQ:PL    0/1:8,21:29:99:586,0,248
19    47137972    rs12460911    G    A    182.51    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.895;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=55.66;MQ0=0;MQRankSum=0.296;QD=16.59;ReadPosRankSum=0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300873    GT:AD:DP:GQ:PL    0/1:4,7:11:98.14:213,0,98
19    47151717    rs45555133    G    A    2484.98    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.659;DB;DP=210;Dels=0.0;FS=1.917;HRun=1;HaplotypeScore=4.2551;MQ=59.67;MQ0=0;MQRankSum=0.368;QD=11.83;ReadPosRankSum=-0.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410105    GT:AD:DP:GQ:PL    0/1:109,101:210:99:2515,0,3296
19    47177913    rs314665    A    G    691.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=26.61;SNPEFF_AMINO_ACID_CHANGE=V835A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47177574_47177992;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291281    GT:AD:DP:GQ:PL    1/1:0,26:26:57.16:725,57,0
19    47193850    rs314671    T    C    1124.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291281    GT:AD:DP:GQ:PL    1/1:0,36:36:87.26:1157,87,0
19    47200605    rs79552142    C    T    60.90    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.61;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291281    GT:AD:DP:GQ:PL    0/1:5,3:8:90.89:91,0,168
19    47212593    rs10423365    A    G    158    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.542;DB;DP=44;Dels=0.0;FS=2.949;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.013;QD=3.59;ReadPosRankSum=-1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291281    GT:AD:DP:GQ:PL    0/1:32,12:44:99:188,0,968
19    47212733    rs12982786    G    A    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.24;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291281    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,110
19    47214411    rs432157    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291281    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    47223949    rs313841    G    A    171.33    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=18;Dels=0.0;FS=4.359;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=9.52;ReadPosRankSum=-0.725;SNPEFF_AMINO_ACID_CHANGE=H605;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47223793_47224028;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539396    GT:AD:DP:GQ:PL    0/1:11,7:18:99:201,0,340
19    47228985    rs313844    G    C    297.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263280    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:331,27,0
19    47228990    rs3848529    T    C    190.98    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.762;QD=21.22;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263280    GT:AD:DP:GQ:PL    0/1:2,7:9:56.44:221,0,56
19    47236268    rs11666600    G    C    109.83    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=2.275;DB;DP=24;Dels=0.0;FS=2.682;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.706;QD=4.58;ReadPosRankSum=0.213;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263280    GT:AD:DP:GQ:PL    0/1:19,5:24:99:140,0,627
19    47239919    rs2270685    G    C    130.57    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.429;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.674;QD=8.7;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263280    GT:AD:DP:GQ:PL    0/1:10,5:15:99:161,0,361
19    47242152    rs34301473    G    A    593.23    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8318;MQ=60.0;MQ0=0;MQRankSum=-1.09;QD=14.12;ReadPosRankSum=-0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STRN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263280    GT:AD:DP:GQ:PL    0/1:18,24:42:99:623,0,625
19    47258842    rs2287717    C    T    79.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=19.97;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=A45;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47258669_47261832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKRP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318584    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:110,0,21
19    47282162    rs2070246    G    A    525.48    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=1.509;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.485;QD=20.21;ReadPosRankSum=0.377;SNPEFF_AMINO_ACID_CHANGE=Y276;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47281932_47282165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542575    GT:AD:DP:GQ:PL    0/1:9,17:26:99:555,0,267
19    47282240    rs3745609    A    G    70.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=10.14;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306894    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,127
19    47285589    rs1644343    A    C    209.94    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.47;MQ0=0;MQRankSum=-0.872;QD=11.66;ReadPosRankSum=-1.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306894    GT:AD:DP:GQ:PL    0/1:10,8:18:99:240,0,205
19    47287169    rs313852    G    A    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306894    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    47287939    rs313853    T    C    52.52    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.386;QD=4.04;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306894    GT:AD:DP:GQ:PL    0/1:9,4:13:82.52:83,0,260
19    47290651    rs3826793    G    T    38.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC1A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306894    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:69,0,24
19    47342867    rs312185    A    C    977.17    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.287;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.11;MQ0=0;MQRankSum=0.509;QD=18.79;ReadPosRankSum=1.009;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263270    GT:AD:DP:GQ:PL    0/1:22,30:52:99:1007,0,722
19    47536166    rs4802330    T    C    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=12.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449844    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
19    47548289    rs12463067    C    A    77.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253047    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
19    47548327    rs10423289    A    C    78.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253047    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
19    47673362    .    T    C    67.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.88;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270225    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:98,0,27
19    47735875    rs45607935    T    C    260.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BBC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439096    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:294,24,0
19    47761543    rs2302985    T    C    592.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,18:18:48.13:626,48,0
19    47761646    rs12985905    G    C    1773.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=32.85;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_47761587_47761660;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1807,138,0
19    47762093    rs1549176    T    C    170.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
19    47763573    rs45591932    C    T    83.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    47764320    rs60099324    T    C    142.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
19    47764363    rs60054606    C    T    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    47768128    rs2032811    G    C    145.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_AMINO_ACID_CHANGE=E197D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47768030_47768203;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504556    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
19    47769839    rs9304666    A    G    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
19    47770015    rs10413121    A    C    128.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.46;SNPEFF_AMINO_ACID_CHANGE=R272;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47769868_47770049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504556    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:161,15,0
19    47773786    rs888838    A    G    1347.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1381,108,0
19    47773973    rs888837    T    C    293.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=22.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,13:13:30.05:327,30,0
19    47774329    rs73570553    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    47774447    rs66726054    G    A    228.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221922    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:261,21,0
19    47774572    rs60930438    C    T    410.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_AMINO_ACID_CHANGE=D393;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47774531_47775208;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000504556    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:443,33,0
19    47774772    rs888836    T    C    1458.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=L460P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47774531_47775208;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000504556    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1491,120,0
19    47774981    rs138990062    TGTGTGTGTGCGCGCGCGCGC    T    481.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=192.5101;IndelType=D;MQ=43.87;MQ0=0;MQRankSum=0.751;QD=48.1;ReadPosRankSum=0.751;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008532.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000552360    GT:AD:DP:GQ:PL    1/1:4,6:10:21.87:523,22,0
19    47813165    rs11670330    G    A    798.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.533;DB;DP=27;Dels=0.0;FS=3.01;HRun=2;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=1.067;QD=29.58;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5AR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355085    GT:AD:DP:GQ:PL    1/1:1,26:27:28.58:832,29,0
19    47823038    rs4467185    G    A    1771.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_AMINO_ACID_CHANGE=D2N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47823038_47825327;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5AR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355085    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1804,135,0
19    47823484    rs4804049    T    C    1784.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.62;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=A150;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47823038_47825327;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5AR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355085    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1818,141,0
19    47823871    rs11880097    G    T    2008.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3046;MQ=59.25;MQ0=0;QD=32.39;SNPEFF_AMINO_ACID_CHANGE=K279N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47823038_47825327;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C5AR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355085    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2041,150,0
19    47858056    rs2694563    C    T    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    47858180    rs2694562    G    A    560.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:594,45,0
19    47858251    rs2547391    C    T    1269.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1302,99,0
19    47858424    rs2245046    G    A    1878.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8891;MQ=59.59;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=V278;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47858296_47858607;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1912,144,0
19    47865911    rs2547390    A    G    942.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_AMINO_ACID_CHANGE=P433;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47865733_47865950;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,27:28:72.24:976,72,0
19    47865959    rs2547389    T    C    563.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,19:19:51.13:596,51,0
19    47870432    rs2547386    C    G    429.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.13;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:463,36,0
19    47875855    rs2547383    A    G    273.28    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.97;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:306,27,0
19    47875891    rs11270236    AGGAGGGCAGGCG    A    1466.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=249.1216;IndelType=D;MQ=35.43;MQ0=0;QD=81.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:1508,54,0
19    47876807    rs2547381    C    G    424.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=32.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471451    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:457,36,0
19    47877041    rs2547380    A    G    213.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471451    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
19    47879023    rs11452607    TG    T    294.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=47.2952;IndelType=D;MQ=58.2;MQ0=0;QD=22.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471451    GT:AD:DP:GQ:PL    1/1:2,11:13:33.07:337,33,0
19    47879279    rs2694558    G    A    1117.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.32;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=L802;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47879181_47879354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328771    GT:AD:DP:GQ:PL    1/1:0,34:34:87.27:1150,87,0
19    47879613    rs2253022    A    G    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471451    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
19    47882957    rs2694556    T    C    3213.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3247,256,0
19    47885000    rs1880852    C    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    47885180    rs889167    A    G    669.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000257252    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:703,57,0
19    47885524    rs2694555    T    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486327    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
19    47933728    rs8104926    A    G    362.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236877    GT:AD:DP:GQ:PL    1/1:0,12:12:33.07:396,33,0
19    47935352    rs4801722    T    C    3087.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9978;MQ=59.36;MQ0=0;MQRankSum=0.689;QD=28.32;ReadPosRankSum=0.896;SNPEFF_AMINO_ACID_CHANGE=K649E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47935345_47935702;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391903    GT:AD:DP:GQ:PL    1/1:3,106:109:99:3120,228,0
19    47944710    rs2254560    T    C    214.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC8A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000236877    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
19    47980153    rs2293424    G    A    132.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=P302;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_47980060_47980195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPTN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338134    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
19    47991441    rs830149    C    G    356.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.65;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KPTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338134    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:390,30,0
19    48034780    rs16972294    G    A    149.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF541;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487275    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:182,15,0
19    48219929    rs61746407    G    A    144.83    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.1;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=T20;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48219815_48220273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263277    GT:AD:DP:GQ:PL    0/1:3,5:8:71.17:175,0,71
19    48239557    rs11669035    T    G    317.27    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.424;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=59.4;MQ0=0;MQRankSum=-0.3;QD=10.23;ReadPosRankSum=0.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263277    GT:AD:DP:GQ:PL    0/1:18,13:31:99:347,0,647
19    48239752    rs138130337    A    G    680.11    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.963;DB;DP=65;Dels=0.0;FS=3.772;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.362;QD=10.46;ReadPosRankSum=-1.046;SNPEFF_AMINO_ACID_CHANGE=I212V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48239626_48239790;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538399    GT:AD:DP:GQ:PL    0/1:39,26:65:99:710,0,1180
19    48244045    rs34197064    C    CT    209.90    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;FS=3.424;HRun=0;HaplotypeScore=21.4505;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.466;QD=19.08;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263277    GT:AD:DP:GQ:PL    0/1:5,6:11:99:249,0,173
19    48244194    rs7255434    A    G    548.89    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=37;Dels=0.0;FS=5.29;HRun=1;HaplotypeScore=1.8245;MQ=58.74;MQ0=0;MQRankSum=-1.767;QD=14.83;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=L243;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48244138_48245110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538399    GT:AD:DP:GQ:PL    0/1:16,21:37:99:579,0,392
19    48244401    rs35910701    G    A    208.44    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.255;DB;DP=25;Dels=0.0;FS=3.965;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.84;QD=8.34;ReadPosRankSum=1.783;SNPEFF_AMINO_ACID_CHANGE=G118R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48244395_48244565;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454483    GT:AD:DP:GQ:PL    0/1:16,9:25:99:238,0,544
19    48244569    rs3745758    G    A    155.98    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.741;QD=9.75;ReadPosRankSum=-0.847;SNPEFF_AMINO_ACID_CHANGE=E187;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48244138_48245122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540884    GT:AD:DP:GQ:PL    0/1:9,7:16:99:186,0,244
19    48250320    rs2334293    G    C    140.01    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.709;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.884;QD=9.33;ReadPosRankSum=2.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263277    GT:AD:DP:GQ:PL    0/1:9,6:15:99:170,0,286
19    48250414    rs3745756    A    G    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263277    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
19    48253579    rs3745754    A    G    309.21    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=2.837;DB;DP=27;Dels=0.0;FS=9.066;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.176;QD=11.45;ReadPosRankSum=1.632;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTSCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246802    GT:AD:DP:GQ:PL    0/1:17,10:27:99:339,0,481
19    48254392    rs10402957    T    C    75.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTSCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246802    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
19    48254707    rs113310396    T    C    263.87    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=1.312;QD=20.3;ReadPosRankSum=1.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTSCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246802    GT:AD:DP:GQ:PL    0/1:4,9:13:99:294,0,123
19    48255804    rs1042558    A    G    487.21    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.979;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6308;MQ=59.38;MQ0=0;MQRankSum=-0.427;QD=13.17;ReadPosRankSum=-1.531;SNPEFF_AMINO_ACID_CHANGE=A235;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48255769_48255864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTSCR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246802    GT:AD:DP:GQ:PL    0/1:13,22:37:99:517,0,189
19    48258551    rs10406879    T    C    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTSCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246802    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
19    48258578    rs10405135    A    G    54.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTSCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246802    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
19    48260079    rs889142    T    C    297.13    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.721;DB;DP=18;Dels=0.0;FS=1.958;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.815;QD=16.51;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLTSCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246802    GT:AD:DP:GQ:PL    0/1:7,11:18:99:327,0,233
19    48265804    rs11668251    A    C    74.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=10.65;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,3:7:97.14:105,0,97
19    48265864    rs11673426    T    C    84.33    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.85;MQ0=0;MQRankSum=0.495;QD=6.02;ReadPosRankSum=1.626;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,4:14:99:114,0,328
19    48265898    rs144562335    AAAAAAC    A    446.66    PASS    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=4.048;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=180.106;IndelType=D;MQ=51.59;MQ0=0;MQRankSum=-3.142;QD=15.95;ReadPosRankSum=-1.217;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:19,9:28:99:486,0,1451
19    48266010    rs4802388    C    T    875.62    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.872;DB;DP=76;Dels=0.0;FS=1.923;HRun=0;HaplotypeScore=1.1567;MQ=57.21;MQ0=0;MQRankSum=0.933;QD=11.52;ReadPosRankSum=0.039;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:40,36:76:99:906,0,1119
19    48266067    rs10424015    A    G    558.31    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.332;DB;DP=44;Dels=0.0;FS=3.604;HRun=0;HaplotypeScore=0.9159;MQ=57.33;MQ0=0;MQRankSum=0.483;QD=12.69;ReadPosRankSum=-0.342;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,20:44:99:588,0,843
19    48266211    rs4801731    A    G    198.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
19    48266226    rs4801732    T    C    73.55    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:62.31:104,0,62
19    48284025    rs34362700    C    CG    550.46    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.673;DB;DP=29;FS=2.105;HRun=6;HaplotypeScore=74.1986;IndelType=I;MQ=59.49;MQ0=0;MQRankSum=0.345;QD=18.98;ReadPosRankSum=-0.823;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008745.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509570    GT:AD:DP:GQ:PL    0/1:11,18:29:99:589,0,160
19    48304907    rs111411093    C    T    459.53    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.315;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=40.9;MQ0=1;MQRankSum=0.441;QD=21.88;ReadPosRankSum=1.701;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPRX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322175    GT:AD:DP:GQ:PL    0/1:3,18:21:15.85:489,0,16
19    48339300    rs3745752    T    C    76.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.19;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221996    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:107,0,27
19    48342295    rs60934372    G    A    162.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=13.51;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556527    GT:AD:DP:GQ:PL    0/1:6,6:12:99:192,0,181
19    48342335    rs59657689    C    T    414.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=56.62;MQ0=0;MQRankSum=-1.529;QD=19.72;ReadPosRankSum=-0.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556527    GT:AD:DP:GQ:PL    0/1:7,14:21:99:444,0,227
19    48342342    rs59440203    C    T    546.03    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.544;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=57.17;MQ0=0;MQRankSum=0.087;QD=21.84;ReadPosRankSum=-1.719;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556527    GT:AD:DP:GQ:PL    0/1:8,17:25:99:576,0,249
19    48342364    rs8100405    G    C    647.13    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=2.161;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;MQRankSum=-1.518;QD=17.03;ReadPosRankSum=1.793;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000556527    GT:AD:DP:GQ:PL    0/1:17,21:38:99:677,0,501
19    48378219    rs296362    G    C    77.44    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=11.06;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222002    GT:AD:DP:GQ:PL    0/1:3,4:7:99:107,0,103
19    48382099    rs34468125    G    T    194.43    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.296;QD=19.44;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222002    GT:AD:DP:GQ:PL    0/1:3,7:10:78.28:224,0,78
19    48382157    rs2547239    T    C    843.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222002    GT:AD:DP:GQ:PL    1/1:0,24:24:69.20:876,69,0
19    48382516    rs11083905    C    T    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.82;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222002    GT:AD:DP:GQ:PL    0/1:2,2:4:61.79:69,0,62
19    48385627    rs2637115    T    C    196.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222002    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:229,21,0
19    48389425    rs11083907    A    G    2648.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=32.7;SNPEFF_AMINO_ACID_CHANGE=F30;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48389379_48389654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000222002    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2682,211,0
19    48402018    rs2972616    G    A    502.79    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.479;DB;DP=36;Dels=0.0;FS=5.188;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.205;QD=13.97;ReadPosRankSum=0.116;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC124853.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408145    GT:AD:DP:GQ:PL    0/1:19,17:36:99:533,0,591
19    48402300    rs73049773    A    G    148.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.922;QD=16.51;ReadPosRankSum=0.922;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AC124853.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408145    GT:AD:DP:GQ:PL    0/1:3,6:9:57.96:179,0,58
19    48484150    rs10422554    G    A    843.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6385;MQ=58.99;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344839    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:876,66,0
19    48495128    rs11671612    T    C    167.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344839    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:200,15,0
19    48511888    rs16982100    T    G    107.95    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.754;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.357;QD=6.0;ReadPosRankSum=0.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:11,7:18:99:138,0,395
19    48517310    rs80305265    G    A    307.38    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=3.148;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6548;MQ=59.11;MQ0=0;MQRankSum=-0.684;QD=11.82;ReadPosRankSum=0.794;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:15,11:26:99:337,0,445
19    48517387    rs41494755    G    A    1069.89    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=4.223;DB;DP=76;Dels=0.0;FS=2.228;HRun=0;HaplotypeScore=1.7886;MQ=59.7;MQ0=0;MQRankSum=1.693;QD=14.08;ReadPosRankSum=-0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:40,36:76:99:1100,0,1022
19    48517676    rs16959494    C    T    248.50    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.524;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=2.163;QD=19.12;ReadPosRankSum=1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:5,8:13:99:278,0,121
19    48519241    rs3745751    C    G    598.69    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.931;DB;DP=52;Dels=0.0;FS=2.481;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.307;QD=11.51;ReadPosRankSum=1.288;SNPEFF_AMINO_ACID_CHANGE=C100W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48519150_48519296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:32,20:52:99:629,0,1020
19    48522869    rs3815908    T    C    171.28    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.101;QD=13.18;ReadPosRankSum=0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:6,7:13:99:201,0,196
19    48522882    rs10422382    A    C    283.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.766;QD=18.9;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:6,9:15:99:313,0,190
19    48522894    rs2115100    C    G    190.08    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.276;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=2.524;QD=12.67;ReadPosRankSum=0.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:8,7:15:99:220,0,242
19    48523197    rs2303691    C    A    366.55    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.456;DB;DP=14;Dels=0.0;FS=5.611;HRun=3;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=0.822;QD=26.18;ReadPosRankSum=0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    0/1:2,12:14:40.08:397,0,40
19    48525507    rs2303690    G    A    2358.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=E199K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48525427_48525591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELSPBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339841    GT:AD:DP:GQ:PL    1/1:0,69:70:99:2392,178,0
19    48533612    rs8112254    T    C    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    48533741    rs35341698    T    G    623.31    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.61;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.2704;MQ=59.05;MQ0=0;MQRankSum=-0.238;QD=12.72;ReadPosRankSum=-0.072;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:23,26:49:99:653,0,744
19    48533856    rs35063174    A    G    1009.97    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=0.141;DB;DP=113;Dels=0.0;FS=15.131;HRun=0;HaplotypeScore=3.5355;MQ=59.22;MQ0=0;MQRankSum=0.045;QD=8.94;ReadPosRankSum=-0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:66,47:113:99:1040,0,2044
19    48537273    rs3745750    A    G    35.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.78;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:65,0,31
19    48537275    rs3745749    C    G    33.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.3;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:64,0,34
19    48537325    rs3745748    A    G    74.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.4;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,108
19    48537585    rs3745746    A    G    454.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=38;Dels=0.0;FS=4.815;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=2.051;QD=11.96;ReadPosRankSum=0.957;SNPEFF_AMINO_ACID_CHANGE=V128A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48537472_48537619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:19,19:38:99:485,0,517
19    48542309    rs750456    C    T    133.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
19    48543718    rs55935218    G    A    73.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.2;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:3,3:6:80.29:103,0,80
19    48543774    rs8102084    C    G    244.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    1/1:0,12:12:24.04:277,24,0
19    48543862    rs8105198    G    A    1718.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_AMINO_ACID_CHANGE=L80;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48543862_48544005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1752,126,0
19    48543923    rs12982629    C    A    937.65    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.465;DB;DP=74;Dels=0.0;FS=0.881;HRun=0;HaplotypeScore=1.9402;MQ=59.1;MQ0=0;MQRankSum=0.404;QD=12.67;ReadPosRankSum=1.255;SNPEFF_AMINO_ACID_CHANGE=T59;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48543862_48544005;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:40,34:74:99:968,0,1034
19    48544753    rs3745745    G    A    932.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    1/1:0,30:30:69.23:965,69,0
19    48544948    rs74807006    C    T    237.88    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.561;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.148;QD=12.52;ReadPosRankSum=0.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293255    GT:AD:DP:GQ:PL    0/1:9,10:19:99:268,0,242
19    48551546    rs9226    A    T    518.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=37.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413144    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:551,42,0
19    48558003    rs744399    A    C    357.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:390,30,0
19    48558342    rs3217328    TCTCCAGAAGACCC    T    1397.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=358.9787;IndelType=D;MQ=39.07;MQ0=0;QD=53.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    1/1:10,16:26:48.16:1440,48,0
19    48558388    rs1529479    T    C    310.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.04;MQ0=0;QD=17.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    1/1:0,18:18:30.09:343,30,0
19    48565087    rs10469296    C    T    558.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:592,45,0
19    48565207    rs2307276    G    A    908.75    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.496;DB;DP=67;Dels=0.0;FS=3.898;HRun=0;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=0.302;QD=13.56;ReadPosRankSum=-0.058;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:35,32:67:99:939,0,870
19    48565468    rs4802425    G    T    371.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:404,30,0
19    48565483    rs11564636    G    A    150.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=16.7;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:3,6:9:96.37:180,0,96
19    48570915    rs8100083    C    A    920.51    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.521;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9067;MQ=59.24;MQ0=0;MQRankSum=-0.732;QD=15.09;ReadPosRankSum=-0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:30,31:61:99:951,0,1020
19    48570927    .    C    T    986.26    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.291;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4038;MQ=59.34;MQ0=0;MQRankSum=1.99;QD=14.09;ReadPosRankSum=-0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:33,35:70:99:1016,0,1126
19    48571026    rs2307278    G    A    6378.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.005;DB;DP=192;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1657;MQ=59.54;MQ0=0;MQRankSum=-1.701;QD=33.22;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    1/1:4,187:192:99:6378,407,0
19    48581142    rs1019786    C    T    170.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.718;QD=14.24;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:6,6:12:99:201,0,216
19    48581253    rs1019785    C    G    135.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
19    48593591    rs3745741    G    C    570.69    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=2.153;DB;DP=42;Dels=0.0;FS=4.886;HRun=0;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;MQRankSum=-1.322;QD=13.59;ReadPosRankSum=0.038;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:22,20:42:99:601,0,600
19    48598823    rs156631    A    G    1659.20    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.771;DB;DP=143;Dels=0.0;FS=0.663;HRun=1;HaplotypeScore=4.8714;MQ=59.35;MQ0=0;MQRankSum=-1.622;QD=11.6;ReadPosRankSum=0.308;SNPEFF_AMINO_ACID_CHANGE=S203P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48598721_48598861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:83,59:143:99:1689,0,2541
19    48598916    rs156632    A    G    2236.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3002;MQ=59.3;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2269,175,0
19    48601350    rs251685    T    C    675.81    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.98;DB;DP=59;Dels=0.0;FS=13.189;HRun=1;HaplotypeScore=2.453;MQ=60.0;MQ0=0;MQRankSum=-1.211;QD=11.45;ReadPosRankSum=0.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:35,24:59:99:706,0,1154
19    48601454    rs251684    T    C    730.74    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.27;DB;DP=51;Dels=0.0;FS=1.13;HRun=0;HaplotypeScore=2.5619;MQ=60.0;MQ0=0;MQRankSum=1.674;QD=14.33;ReadPosRankSum=-0.156;SNPEFF_AMINO_ACID_CHANGE=P170;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48601396_48601516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:23,28:51:99:761,0,739
19    48601528    rs251683    G    T    400.99    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=31;Dels=0.0;FS=2.218;HRun=0;HaplotypeScore=0.9967;MQ=60.35;MQ0=0;MQRankSum=0.145;QD=12.94;ReadPosRankSum=-1.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G4C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354276    GT:AD:DP:GQ:PL    0/1:17,14:31:99:431,0,532
19    48621036    rs13436    C    G    204.42    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.225;DB;DP=20;Dels=0.0;FS=2.003;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.549;QD=10.22;ReadPosRankSum=1.733;SNPEFF_AMINO_ACID_CHANGE=A746;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48620895_48621038;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536218    GT:AD:DP:GQ:PL    0/1:13,7:20:99:234,0,349
19    48624625    rs153023    C    T    81.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.04;MQ0=0;MQRankSum=0.731;QD=13.58;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:2,4:6:20.46:111,0,20
19    48624726    rs251690    G    A    33.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:63,0,31
19    48630700    rs2067286    GCC    G    422.11    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=3.662;DB;DP=23;FS=0.0;HRun=4;HaplotypeScore=93.5471;IndelType=D;MQ=59.47;MQ0=0;MQRankSum=0.092;QD=18.35;ReadPosRankSum=-0.831;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:11,12:23:99:461,0,544
19    48630763    rs156640    G    C    252.04    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.9;MQ0=0;MQRankSum=-0.555;QD=21.0;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:3,9:12:91.06:282,0,91
19    48631408    rs156641    C    T    53.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=6.74;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:4,4:8:83.92:84,0,138
19    48634319    rs392891    T    A    494.12    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.277;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.555;QD=17.65;ReadPosRankSum=0.952;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542460    GT:AD:DP:GQ:PL    0/1:12,16:28:99:524,0,367
19    48636534    rs2288883    T    G    72.15    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=9.02;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542460    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,169
19    48639472    rs3730976    T    C    43.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.89;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:1,3:4:33.20:74,0,33
19    48640259    .    G    A    76.15    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.23;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:2,3:5:60.54:106,0,61
19    48643050    rs147583451    CCT    C    296.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=37.6203;IndelType=D;MQ=61.78;MQ0=0;MQRankSum=1.134;QD=24.68;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:4,8:12:99:335,0,184
19    48646732    rs3730938    A    G    703.81    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.995;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=53.65;MQ0=0;MQRankSum=-0.125;QD=10.83;ReadPosRankSum=-1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:36,29:65:99:734,0,1099
19    48646883    rs2288878    T    C    447.02    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.663;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.77;MQ0=0;MQRankSum=-0.134;QD=9.72;ReadPosRankSum=-1.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:27,19:46:99:477,0,856
19    48646993    rs415465    C    T    484.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:518,42,0
19    48654553    rs20580    G    T    568.02    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.15;DB;DP=50;Dels=0.0;FS=11.33;HRun=1;HaplotypeScore=1.6671;MQ=59.63;MQ0=0;MQRankSum=-0.811;QD=11.36;ReadPosRankSum=0.11;SNPEFF_AMINO_ACID_CHANGE=A138;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48654489_48654596;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542460    GT:AD:DP:GQ:PL    0/1:26,24:50:99:598,0,738
19    48660243    rs3730867    GAAGGGGCA    G    723.14    PASS    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=4.07;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=435.1468;IndelType=D;MQ=41.79;MQ0=0;MQRankSum=-2.43;QD=17.64;ReadPosRankSum=-0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:27,11:41:99:762,0,1838
19    48660445    rs274862    T    C    361.50    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.196;DB;DP=30;Dels=0.0;FS=1.862;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.109;QD=12.05;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:16,14:30:99:391,0,523
19    48664798    rs3730862    G    A    742.93    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=0.479;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.4187;MQ=59.66;MQ0=0;MQRankSum=1.201;QD=10.93;ReadPosRankSum=1.411;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:41,26:68:99:773,0,1271
19    48668709    rs3730850    A    G    195.27    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.564;QD=9.76;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:12,7:20:99:225,0,406
19    48668795    rs3730849    G    A    463.89    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.159;DB;DP=45;Dels=0.0;FS=1.433;HRun=1;HaplotypeScore=1.5773;MQ=59.49;MQ0=0;MQRankSum=0.5;QD=10.31;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:28,17:45:99:494,0,954
19    48668966    rs34824188    G    GA    133.22    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=18;FS=0.0;HRun=11;HaplotypeScore=42.3217;IndelType=I;MQ=58.71;MQ0=0;MQRankSum=0.299;QD=7.4;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263274    GT:AD:DP:GQ:PL    0/1:10,7:18:99:172,0,104
19    48696678    rs11083921    C    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf68;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328759    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    48715269    rs2008521    T    C    1203.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CARD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523668    GT:AD:DP:GQ:PL    1/1:0,33:33:93.29:1237,93,0
19    48715417    rs2008527    T    C    99.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CARD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523668    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:132,12,0
19    48734018    rs2304134    G    A    2741.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.007;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=59.23;MQ0=0;MQRankSum=0.282;QD=30.46;ReadPosRankSum=-0.161;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CARD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517778    GT:AD:DP:GQ:PL    1/1:1,88:90:99:2774,194,0
19    48735287    rs4802448    A    G    1680.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CARD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517778    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1714,126,0
19    48737449    rs9304675    G    C    129.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CARD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519332    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
19    48737706    rs2043211    A    T    6355.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=194;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.42;MQ0=0;QD=32.76;SNPEFF_AMINO_ACID_CHANGE=C10*;SNPEFF_CODON_CHANGE=tgT/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_19_48737660_48737800;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CARD8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000359009    GT:AD:DP:GQ:PL    1/1:0,194:194:99:6355,472,0
19    48744345    rs16981853    T    C    482.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CARD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357778    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:515,39,0
19    48788853    rs4802462    A    G    204.65    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.14;MQ0=0;QD=29.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315849    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:238,21,0
19    48788904    rs140236127    GGAAAGAAA    G    1145.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=165.0179;IndelType=D;MQ=31.83;MQ0=0;QD=71.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315849    GT:AD:DP:GQ:PL    1/1:1,15:16:45.15:1187,45,0
19    48800338    rs7252988    A    G    1919.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=29.53;SNPEFF_AMINO_ACID_CHANGE=S636;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48799714_48800775;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC114;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000315396    GT:AD:DP:GQ:PL    1/1:0,65:65:99:1952,156,0
19    48800751    rs61747754    C    A    178.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_AMINO_ACID_CHANGE=A499S;SNPEFF_CODON_CHANGE=Gcg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48799714_48800775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC114;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000315396    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:212,18,0
19    48800791    rs2292113    A    G    179.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315396    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:213,18,0
19    48801426    rs8111947    T    C    1196.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315396    GT:AD:DP:GQ:PL    1/1:0,37:37:93.28:1230,93,0
19    48821896    rs73047547    C    A    103.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=25.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483610    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:136,12,0
19    48823545    rs8107712    G    A    457.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474199    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:490,36,0
19    48830286    rs10415654    T    A    237.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270221    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:270,21,0
19    48832554    rs8102349    A    G    462.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293261    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:495,39,0
19    48833800    rs8355    C    T    115.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293261    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:148,12,0
19    48833806    rs11665    C    G    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293261    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
19    48836673    rs3826828    G    T    1266.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=32.47;SNPEFF_AMINO_ACID_CHANGE=R285;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48836363_48836690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541566    GT:AD:DP:GQ:PL    1/1:0,39:39:96.30:1299,96,0
19    48848274    rs275581    C    A    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293261    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    48848297    rs16982010    C    T    195.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293261    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
19    48848708    rs112116754    T    TTTAC    723.44    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=60.3417;IndelType=I;MQ=61.74;MQ0=0;MQRankSum=1.488;QD=51.67;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293261    GT:AD:DP:GQ:PL    1/1:1,13:14:15.09:765,15,0
19    48866457    rs73049222    G    C    207.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293261    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:241,18,0
19    48866482    rs3826824    C    T    472.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM143;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293261    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:505,39,0
19    48876661    rs2569713    A    G    594.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNGR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344846    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:627,48,0
19    48893169    rs276703    T    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330720    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    48893835    .    A    G    41.06    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.018;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.9945;MQ=58.41;MQ0=0;MQRankSum=0.807;QD=2.57;ReadPosRankSum=-2.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330720    GT:AD:DP:GQ:PL    0/1:13,3:16:71.05:71,0,383
19    48908631    rs34833452    AG    A    146.98    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;FS=0.0;HRun=4;HaplotypeScore=23.0381;IndelType=D;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=14.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263269    GT:AD:DP:GQ:PL    0/1:4,6:10:99:186,0,138
19    48922772    rs72315193    CT    C    99.81    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=16;FS=2.881;HRun=13;HaplotypeScore=66.133;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=-1.134;QD=6.24;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263269    GT:AD:DP:GQ:PL    0/1:10,6:16:70.72:139,0,71
19    48923101    rs276709    C    A    470.29    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9942;MQ=60.0;MQ0=0;MQRankSum=-0.25;QD=18.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263269    GT:AD:DP:GQ:PL    0/1:10,15:26:99:500,0,295
19    48924763    rs278059    T    C    37.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263269    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:68,0,29
19    48924963    rs1654671    G    A    278.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.165;QD=12.64;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263269    GT:AD:DP:GQ:PL    0/1:12,10:22:99:308,0,308
19    48949286    rs1643487    G    T    222.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.74;SNPEFF_AMINO_ACID_CHANGE=R8;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_48949030_48949449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRWD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253237    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:255,21,0
19    48949766    rs929743    C    G    782.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263269    GT:AD:DP:GQ:PL    1/1:0,25:25:60.20:815,60,0
19    48950185    rs58664155    CATG    C    604.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=223.5583;IndelType=D;MQ=38.12;MQ0=0;QD=28.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263269    GT:AD:DP:GQ:PL    1/1:2,18:21:39.12:646,39,0
19    48950259    rs1632101    C    T    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIN2D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263269    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
19    48977019    rs1799258    C    T    124.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462117    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
19    48981933    rs7257081    T    C    146.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325139    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:179,15,0
19    48981946    rs1799289    T    C    108.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325139    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:141,12,0
19    49090368    rs34482710    T    TA    485.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=9;HaplotypeScore=39.938;IndelType=I;MQ=61.88;MQ0=0;QD=28.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201586    GT:AD:DP:GQ:PL    1/1:1,16:17:48.13:527,48,0
19    49102399    rs1132054    C    T    171.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=19.07;SNPEFF_AMINO_ACID_CHANGE=C263;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49102392_49102683;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323090    GT:AD:DP:GQ:PL    1/1:0,9:9:15.05:204,15,0
19    49104308    rs1236093    C    T    985.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.25;MQ0=0;QD=31.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT2B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201586    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1018,75,0
19    49116134    rs2617800    T    G    68.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=17.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPL18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450952    GT:AD:DP:GQ:PL    1/1:0,4:4:9:100,9,0
19    49116555    rs368654    A    G    230.13    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.164;DB;DP=19;Dels=0.0;FS=2.35;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=12.11;ReadPosRankSum=1.266;SNPEFF_AMINO_ACID_CHANGE=F25;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49116165_49116694;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83E;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263266    GT:AD:DP:GQ:PL    0/1:9,10:19:99:260,0,297
19    49131764    rs34630951    A    AAG    209.07    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=25.2188;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=23.23;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222122    GT:AD:DP:GQ:PL    0/1:4,5:9:99:248,0,144
19    49141406    rs34902191    AAGAC    A    186.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=47.496;IndelType=D;MQ=47.12;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000084798    GT:AD:DP:GQ:PL    1/1:1,5:6:12.04:228,12,0
19    49143025    rs2303147    T    C    1628.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000084798    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1661,132,0
19    49148781    rs10426317    C    T    281.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000084798    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:315,24,0
19    49164952    rs281392    A    G    171.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.48;SNPEFF_AMINO_ACID_CHANGE=S484;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49164666_49165298;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270235    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:204,15,0
19    49166875    rs371690    G    A    1386.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270235    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1419,105,0
19    49183705    rs3826846    G    A    835.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=29.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008888.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474419    GT:AD:DP:GQ:PL    1/1:0,28:28:66.21:869,66,0
19    49206108    rs679574    C    G    1389.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1422,114,0
19    49206145    rs516316    G    C    1856.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1890,150,0
19    49206172    rs516246    C    T    2246.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.67;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2279,169,0
19    49206403    .    T    C    232.47    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.819;DP=26;Dels=0.0;FS=1.824;HRun=0;HaplotypeScore=0.5784;MQ=56.13;MQ0=0;MQRankSum=-0.63;QD=8.94;ReadPosRankSum=0.082;SNPEFF_AMINO_ACID_CHANGE=W64R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49206212_49207293;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    0/1:14,12:26:99:262,0,477
19    49206417    rs492602    A    G    692.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.48;MQ0=0;QD=31.46;SNPEFF_AMINO_ACID_CHANGE=A68;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49206212_49207293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:725,57,0
19    49206462    rs681343    C    T    480.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.75;MQ0=0;QD=30.02;SNPEFF_AMINO_ACID_CHANGE=Y83;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49206212_49207293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    1/1:0,15:16:42.11:513,42,0
19    49206674    rs601338    G    A    1210.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.16;MQ0=0;QD=29.52;SNPEFF_AMINO_ACID_CHANGE=W154*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_19_49206212_49207293;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    1/1:0,41:41:93.30:1243,93,0
19    49206985    rs602662    G    A    2878.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.73;MQ0=0;QD=33.87;SNPEFF_AMINO_ACID_CHANGE=G258S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49206212_49207293;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2912,211,0
19    49207206    rs485186    A    G    1316.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=32.12;SNPEFF_AMINO_ACID_CHANGE=T331;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49206212_49207293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391876    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1350,108,0
19    49207255    rs485073    A    G    950.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522966    GT:AD:DP:GQ:PL    1/1:0,33:33:72.24:983,72,0
19    49207257    rs603985    T    C    932.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522966    GT:AD:DP:GQ:PL    1/1:0,33:33:75.24:965,75,0
19    49216926    rs281384    A    G    1018.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=29.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMSTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318083    GT:AD:DP:GQ:PL    1/1:0,34:34:90.25:1052,90,0
19    49217261    rs281385    A    G    754.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.23;MQ0=0;QD=31.42;SNPEFF_AMINO_ACID_CHANGE=R152;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49217117_49217302;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMSTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356751    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:787,60,0
19    49218060    rs35866622    C    T    1161.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.4813;MQ=55.45;MQ0=0;QD=29.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMSTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318083    GT:AD:DP:GQ:PL    1/1:0,40:40:93.28:1195,93,0
19    49218111    rs33988101    G    T    1035.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8808;MQ=56.68;MQ0=0;QD=25.89;SNPEFF_AMINO_ACID_CHANGE=P160;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49218063_49218165;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMSTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318083    GT:AD:DP:GQ:PL    1/1:0,40:40:84.24:1069,84,0
19    49218430    rs12978750    A    G    197.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMSTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318083    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
19    49218437    rs12978752    A    C    199.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMSTR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318083    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
19    49218602    rs12979278    C    T    1102.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.61;SNPEFF_AMINO_ACID_CHANGE=A114;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49218519_49218703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAMSTR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318083    GT:AD:DP:GQ:PL    1/1:0,36:36:90.26:1135,90,0
19    49224389    rs3859439    T    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222145    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    49224966    rs519757    A    C    622.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.28;MQ0=0;QD=38.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222145    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:655,48,0
19    49227443    rs11878908    C    T    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222145    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
19    49227510    rs281405    T    C    297.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222145    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:330,24,0
19    49228272    rs2287921    T    C    1250.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222145    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1283,99,0
19    49259979    rs838132    A    G    157.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222157    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
19    49299533    rs557106    A    G    540.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316273    GT:AD:DP:GQ:PL    1/1:0,17:17:51.12:573,51,0
19    49300605    rs526744    T    C    134.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316273    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:167,12,0
19    49303070    rs11548193    G    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_AMINO_ACID_CHANGE=T146R;SNPEFF_CODON_CHANGE=aCg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49302932_49303095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAT2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402551    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    49334991    rs62127966    C    T    382.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.82;DB;DP=28;Dels=0.0;FS=4.151;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.946;QD=13.67;ReadPosRankSum=-0.655;SNPEFF_AMINO_ACID_CHANGE=E101;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49334925_49335016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263278    GT:AD:DP:GQ:PL    0/1:14,14:28:99:413,0,373
19    49337647    rs114122193    C    T    423.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.993;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=52.62;MQ0=0;MQRankSum=-2.365;QD=11.14;ReadPosRankSum=0.759;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:19,19:38:99:453,0,627
19    49337657    rs143905588    C    G    333.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.161;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=51.61;MQ0=0;MQRankSum=-2.862;QD=11.13;ReadPosRankSum=0.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:15,15:30:99:364,0,519
19    49337670    .    T    C    185.04    SnpCluster    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.016;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.76;MQ0=0;MQRankSum=-3.539;QD=8.05;ReadPosRankSum=-0.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:12,11:23:99:215,0,399
19    49337676    .    A    G    130.52    SnpCluster    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.274;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=48.57;MQ0=0;MQRankSum=-3.345;QD=6.22;ReadPosRankSum=-0.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:11,10:21:99:161,0,371
19    49337678    .    T    C    101.03    SnpCluster    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9989;MQ=48.57;MQ0=0;MQRankSum=-3.134;QD=4.81;ReadPosRankSum=-0.669;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:11,10:21:99:131,0,405
19    49337705    rs113806732    T    G    32.49    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=47.26;MQ0=0;MQRankSum=-2.637;QD=2.95;ReadPosRankSum=-0.717;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:6,5:11:62.48:62,0,210
19    49339098    rs8110220    T    C    322.80    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.735;DB;DP=22;Dels=0.0;FS=1.885;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=14.67;ReadPosRankSum=1.135;SNPEFF_AMINO_ACID_CHANGE=N31D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49339062_49339100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSD17B14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263278    GT:AD:DP:GQ:PL    0/1:9,13:22:99:353,0,236
19    49340858    rs10407029    C    T    207.09    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.077;QD=14.79;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:4,10:14:99:237,0,131
19    49340998    rs10408888    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    49342366    rs17272645    C    G    252.51    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.48;QD=25.25;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:2,8:10:52.90:283,0,53
19    49342396    rs55966626    G    T    286.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.353;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.384;QD=15.92;ReadPosRankSum=2.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:9,9:18:99:317,0,274
19    49349025    rs144491555    G    A    87.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
19    49350984    rs73061617    G    A    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
19    49351149    rs28556985    C    T    190.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.791;QD=13.58;ReadPosRankSum=0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:7,7:14:99:220,0,156
19    49355385    rs45589039    C    T    268.52    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.256;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=22.38;ReadPosRankSum=1.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:2,10:12:48.39:299,0,48
19    49355405    rs17272658    C    T    310.79    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.639;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.552;QD=22.2;ReadPosRankSum=0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:2,12:14:36.50:341,0,37
19    49362001    rs17206714    T    A    563.46    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.997;DB;DP=45;Dels=0.0;FS=1.831;HRun=1;HaplotypeScore=0.9867;MQ=56.74;MQ0=0;MQRankSum=0.399;QD=12.52;ReadPosRankSum=-0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:23,22:45:99:593,0,748
19    49362992    rs17272673    C    A    128.88    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.8;QD=9.21;ReadPosRankSum=-0.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:9,5:14:99:159,0,261
19    49368843    rs506425    T    C    383.61    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.307;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6316;MQ=60.0;MQ0=0;MQRankSum=0.644;QD=12.79;ReadPosRankSum=-0.561;SNPEFF_AMINO_ACID_CHANGE=I37V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49368760_49368867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLEKHA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263265    GT:AD:DP:GQ:PL    0/1:16,14:30:99:414,0,534
19    49376584    rs3786734    G    A    254.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.678;DB;DP=18;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.795;QD=14.16;ReadPosRankSum=0.442;SNPEFF_AMINO_ACID_CHANGE=A32T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49376482_49378155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000200453    GT:AD:DP:GQ:PL    0/1:9,9:18:99:285,0,260
19    49377319    rs610308    A    G    715.19    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.061;DB;DP=56;Dels=0.0;FS=1.067;HRun=0;HaplotypeScore=0.9997;MQ=59.17;MQ0=0;MQRankSum=1.896;QD=12.77;ReadPosRankSum=1.203;SNPEFF_AMINO_ACID_CHANGE=K117E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49376974_49378155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540695    GT:AD:DP:GQ:PL    0/1:26,30:56:99:745,0,778
19    49377424    rs11541192    G    A    239.64    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=37;Dels=0.0;FS=1.392;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.86;QD=6.48;ReadPosRankSum=0.178;SNPEFF_AMINO_ACID_CHANGE=G152S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49376974_49378155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540695    GT:AD:DP:GQ:PL    0/1:25,12:37:99:270,0,857
19    49377436    rs556052    G    C    326.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.147;DB;DP=42;Dels=0.0;FS=2.759;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.134;QD=7.77;ReadPosRankSum=-0.307;SNPEFF_AMINO_ACID_CHANGE=A156P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49376974_49378155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540695    GT:AD:DP:GQ:PL    0/1:28,14:42:99:356,0,980
19    49377873    rs35023389    G    A    794.11    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.685;DB;DP=64;Dels=0.0;FS=2.29;HRun=0;HaplotypeScore=0.9998;MQ=59.28;MQ0=0;MQRankSum=0.846;QD=12.41;ReadPosRankSum=-0.805;SNPEFF_AMINO_ACID_CHANGE=L301;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49376974_49378155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540695    GT:AD:DP:GQ:PL    0/1:36,28:64:99:824,0,1226
19    49377918    rs35087747    G    T    690.31    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.97;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=-1.11;QD=14.09;ReadPosRankSum=-1.51;SNPEFF_AMINO_ACID_CHANGE=R316S;SNPEFF_CODON_CHANGE=agG/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49376974_49378155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540695    GT:AD:DP:GQ:PL    0/1:24,25:49:99:720,0,689
19    49378994    rs500079    A    G    1378.04    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=107;Dels=0.0;FS=8.528;HRun=0;HaplotypeScore=3.7747;MQ=58.7;MQ0=0;MQRankSum=0.716;QD=12.88;ReadPosRankSum=1.589;SNPEFF_AMINO_ACID_CHANGE=T437A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49378871_49379318;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540695    GT:AD:DP:GQ:PL    0/1:42,61:107:99:1408,0,1007
19    49379167    rs524    C    T    1358.57    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.346;DB;DP=99;Dels=0.0;FS=0.966;HRun=0;HaplotypeScore=2.3134;MQ=58.96;MQ0=0;MQRankSum=0.328;QD=13.72;ReadPosRankSum=0.79;SNPEFF_AMINO_ACID_CHANGE=A494;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49378871_49379318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540695    GT:AD:DP:GQ:PL    0/1:51,48:99:99:1389,0,1477
19    49379182    rs527    G    C    1100.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=80;Dels=0.0;FS=1.141;HRun=1;HaplotypeScore=1.983;MQ=59.19;MQ0=0;MQRankSum=-0.279;QD=13.75;ReadPosRankSum=-1.505;SNPEFF_AMINO_ACID_CHANGE=S499;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49378871_49379318;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R15A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540695    GT:AD:DP:GQ:PL    0/1:40,40:80:99:1130,0,1292
19    49384450    rs72442245    CTT    C    45.65    QDFilter2    AB=0.861;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.151;DB;DP=61;FS=4.101;HRun=17;HaplotypeScore=541.293;IndelType=D;MQ=45.56;MQ0=0;MQRankSum=1.991;QD=0.74;ReadPosRankSum=2.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:52,5:61:84.68:85,0,380
19    49385253    rs1466896    C    G    443.12    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.344;DB;DP=33;Dels=0.0;FS=1.945;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=0.488;QD=13.43;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:15,18:33:99:473,0,409
19    49386798    rs10416922    T    C    43.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.62;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518572    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:74,0,33
19    49398847    rs56146968    A    G    195.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.263;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.368;QD=12.24;ReadPosRankSum=2.048;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:8,8:16:99:226,0,187
19    49399676    rs73061692    T    C    876.75    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=2.303;DB;DP=54;Dels=0.0;FS=1.061;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.138;QD=16.24;ReadPosRankSum=-0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:21,33:54:99:907,0,520
19    49399821    rs12461075    G    A    249.88    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.212;QD=15.62;ReadPosRankSum=2.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:7,9:16:99:280,0,220
19    49399941    rs73061693    C    A    100.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=16.78;ReadPosRankSum=0.72;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_49399687_49399996;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000522229    GT:AD:DP:GQ:PL    0/1:2,4:6:59.83:131,0,60
19    49399978    rs73061694    T    C    74.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.6;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:104,0,30
19    49399988    rs73061695    T    C    71.43    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=17.86;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:1,3:4:30.61:101,0,31
19    49400000    rs73061697    C    T    34.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=11.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:64,0,33
19    49400511    rs73061699    T    C    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:69,0,34
19    49401205    rs60572211    C    CTTAT    396.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=57.1079;IndelType=I;MQ=62.5;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TULP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221399    GT:AD:DP:GQ:PL    1/1:9,8:17:24.08:439,24,0
19    49407660    rs1058483    G    A    77.56    PASS    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=0.383;DB;DP=22;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-2.171;QD=3.53;ReadPosRankSum=-0.383;SNPEFF_AMINO_ACID_CHANGE=T64;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49407604_49407711;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263273    GT:AD:DP:GQ:PL    0/1:18,4:22:99:108,0,489
19    49408943    rs73063523    T    C    231.77    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.592;DB;DP=25;Dels=0.0;FS=2.623;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.786;QD=9.27;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263273    GT:AD:DP:GQ:PL    0/1:17,8:25:99:262,0,539
19    49409004    rs73063524    T    C    468.71    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=36;Dels=0.0;FS=1.33;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.083;QD=13.02;ReadPosRankSum=-1.341;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263273    GT:AD:DP:GQ:PL    0/1:17,19:36:99:499,0,441
19    49421829    rs2287834    A    G    247.54    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.716;QD=8.84;ReadPosRankSum=0.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263273    GT:AD:DP:GQ:PL    0/1:17,11:28:99:278,0,486
19    49421903    rs2287835    A    G    1113.24    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.573;DB;DP=75;Dels=0.0;FS=6.181;HRun=1;HaplotypeScore=0.8667;MQ=59.38;MQ0=0;MQRankSum=-0.811;QD=14.84;ReadPosRankSum=-1.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263273    GT:AD:DP:GQ:PL    0/1:29,46:75:99:1143,0,864
19    49421966    rs2287836    T    C    481.37    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=59.66;MQ0=0;MQRankSum=0.274;QD=7.18;ReadPosRankSum=-1.636;SNPEFF_AMINO_ACID_CHANGE=A256;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49421924_49422001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452087    GT:AD:DP:GQ:PL    0/1:45,22:67:99:511,0,1335
19    49422432    rs34440815    C    T    186.44    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.823;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452087    GT:AD:DP:GQ:PL    0/1:13,7:20:99:216,0,471
19    49424354    rs12979307    C    T    295.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452087    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:328,24,0
19    49424381    rs12979328    C    A    325.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452087    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:359,27,0
19    49424925    rs11671777    C    T    453.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452087    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:487,36,0
19    49425341    rs12974483    T    C    150.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452087    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
19    49425772    rs1532704    T    C    371.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452087    GT:AD:DP:GQ:PL    1/1:0,14:14:39.04:405,39,0
19    49436980    rs61742557    T    A    290.10    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.518;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.469;QD=10.74;ReadPosRankSum=-0.074;SNPEFF_AMINO_ACID_CHANGE=M1K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_19_49436939_49437068;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHDH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000221403    GT:AD:DP:GQ:PL    0/1:16,11:27:99:320,0,438
19    49442508    rs10426890    G    A    96.03    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=8.73;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221403    GT:AD:DP:GQ:PL    0/1:5,6:11:99:126,0,175
19    49442849    rs3830420    T    TG    179.04    PASS    AB=0.809;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.69;DB;DP=38;FS=0.0;HRun=7;HaplotypeScore=93.1061;IndelType=I;MQ=59.39;MQ0=0;MQRankSum=-0.183;QD=4.71;ReadPosRankSum=1.973;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_49442706_49442958;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHDH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000221403    GT:AD:DP:GQ:PL    0/1:29,9:38:99:218,0,666
19    49442933    rs2270939    T    C    751.76    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.979;DB;DP=64;Dels=0.0;FS=2.182;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.053;QD=11.75;ReadPosRankSum=-0.764;SNPEFF_AMINO_ACID_CHANGE=S198;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49442706_49442958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHDH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221403    GT:AD:DP:GQ:PL    0/1:33,30:64:99:782,0,1042
19    49445679    rs11669022    C    T    385.88    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.132;DB;DP=24;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.713;QD=16.08;ReadPosRankSum=-2.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHDH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221403    GT:AD:DP:GQ:PL    0/1:10,14:24:99:416,0,319
19    49445817    rs11666105    T    C    286.88    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.674;QD=14.34;ReadPosRankSum=0.857;SNPEFF_AMINO_ACID_CHANGE=V108A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49445697_49445821;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000523250    GT:AD:DP:GQ:PL    0/1:9,11:20:99:317,0,212
19    49447748    rs3835153    GGA    G    812.08    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=3.948;DB;DP=35;FS=5.618;HRun=0;HaplotypeScore=121.2889;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.281;QD=23.2;ReadPosRankSum=-0.692;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_49447614_49447764;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHDH;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000221403    GT:AD:DP:GQ:PL    0/1:14,21:35:99:851,0,597
19    49458262    rs4645881    C    T    97.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=19.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=BAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293288    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:130,12,0
19    49459104    rs1805419    A    G    660.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.419;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=30.0;ReadPosRankSum=0.946;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=BAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293288    GT:AD:DP:GQ:PL    1/1:1,21:22:17.96:693,18,0
19    49459212    rs3817074    A    G    212.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=BAX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293288    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
19    49469087    rs2230267    T    C    810.72    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.088;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.186;QD=15.9;ReadPosRankSum=-1.339;SNPEFF_AMINO_ACID_CHANGE=L55;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49469027_49469173;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331825    GT:AD:DP:GQ:PL    0/1:22,29:51:99:841,0,604
19    49474027    rs2270938    A    T    93.36    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.8;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.667;QD=6.67;ReadPosRankSum=-0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331825    GT:AD:DP:GQ:PL    0/1:9,5:14:99:123,0,302
19    49485548    rs5464    G    A    387.04    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.681;DB;DP=38;Dels=0.0;FS=10.571;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;MQRankSum=1.014;QD=10.19;ReadPosRankSum=1.861;SNPEFF_AMINO_ACID_CHANGE=S223F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49485512_49485632;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540532    GT:AD:DP:GQ:PL    0/1:24,14:38:99:417,0,729
19    49485758    rs2270937    C    T    212.02    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.872;QD=14.13;ReadPosRankSum=-0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457974    GT:AD:DP:GQ:PL    0/1:7,8:15:99:242,0,216
19    49512857    rs4802533    C    T    34.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.36;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:64,0,34
19    49513273    rs1062708    C    T    492.08    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.373;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.43;MQ0=0;MQRankSum=-0.99;QD=10.04;ReadPosRankSum=0.521;SNPEFF_AMINO_ACID_CHANGE=L160;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49513230_49513323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413176    GT:AD:DP:GQ:PL    0/1:24,25:49:99:522,0,743
19    49513305    rs138614683    C    T    413.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.558;DB;DP=28;Dels=0.0;FS=10.576;HRun=0;HaplotypeScore=0.8941;MQ=59.01;MQ0=0;MQRankSum=-0.024;QD=14.76;ReadPosRankSum=1.432;SNPEFF_AMINO_ACID_CHANGE=Y170;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49513230_49513323;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413176    GT:AD:DP:GQ:PL    0/1:14,14:28:99:443,0,348
19    49513349    rs2287760    C    G    159.16    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=16;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=9.95;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:10,6:16:99:189,0,279
19    49514008    rs2287759    G    C    106.42    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.495;QD=15.2;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:2,5:7:63.18:136,0,63
19    49514016    rs35881867    C    A    102.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.937;QD=14.62;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:3,4:7:90.76:132,0,91
19    49514026    rs2287758    C    T    106    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-1.38;QD=17.67;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:2,4:6:41.13:136,0,41
19    49519058    rs749776    T    C    285.98    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.162;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.943;QD=9.53;ReadPosRankSum=1.688;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221421    GT:AD:DP:GQ:PL    0/1:16,14:30:99:316,0,546
19    49519230    rs2013039    T    G    333.73    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.942;DB;DP=41;Dels=0.0;FS=1.333;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.468;QD=8.14;ReadPosRankSum=-0.269;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221421    GT:AD:DP:GQ:PL    0/1:27,14:41:99:364,0,884
19    49519466    rs1056917    A    G    685.84    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=0.313;DB;DP=53;Dels=0.0;FS=7.963;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.848;QD=12.94;ReadPosRankSum=-0.461;SNPEFF_AMINO_ACID_CHANGE=G111;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49519349_49519567;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391870    GT:AD:DP:GQ:PL    0/1:30,23:53:99:716,0,922
19    49519793    rs2387588    A    G    43.18    QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.304;DB;DP=23;Dels=0.0;FS=2.645;HRun=2;HaplotypeScore=0.0;MQ=53.58;MQ0=0;MQRankSum=-3.168;QD=1.88;ReadPosRankSum=0.484;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:18,5:23:73.17:73,0,565
19    49519855    rs1056914    T    G    401.75    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.437;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.61;MQ0=0;MQRankSum=-4.798;QD=10.3;ReadPosRankSum=-2.805;SNPEFF_AMINO_ACID_CHANGE=P44;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49519804_49519971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221421    GT:AD:DP:GQ:PL    0/1:21,17:39:99:432,0,649
19    49519873    rs6521    G    C    490.22    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.385;DB;DP=43;Dels=0.0;FS=2.755;HRun=1;HaplotypeScore=1.3302;MQ=52.57;MQ0=0;MQRankSum=-4.484;QD=11.4;ReadPosRankSum=1.205;SNPEFF_AMINO_ACID_CHANGE=V38;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49519804_49519971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221421    GT:AD:DP:GQ:PL    0/1:26,17:43:99:520,0,725
19    49519997    rs4002462    A    G    392.33    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=31;Dels=0.0;FS=1.946;HRun=2;HaplotypeScore=1.399;MQ=47.0;MQ0=0;MQRankSum=-4.363;QD=12.66;ReadPosRankSum=0.285;SNPEFF_AMINO_ACID_CHANGE=L13P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49519804_49520077;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391870    GT:AD:DP:GQ:PL    0/1:14,17:31:99:422,0,379
19    49520076    rs3956233    C    T    149.68    MQFilter40    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=0.0;MQ=29.91;MQ0=0;MQRankSum=0.067;QD=16.63;ReadPosRankSum=-1.179;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_49519804_49520077;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LHB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391870    GT:AD:DP:GQ:PL    0/1:2,7:9:43.73:180,0,44
19    49520315    rs2387589    T    C    1079.90    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=4.139;DB;DP=83;Dels=0.0;FS=5.883;HRun=0;HaplotypeScore=0.734;MQ=56.24;MQ0=0;MQRankSum=-3.542;QD=13.01;ReadPosRankSum=1.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:41,42:83:99:1110,0,1165
19    49520372    rs3752210    A    T    954.79    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=3.944;DB;DP=76;Dels=0.0;FS=5.335;HRun=1;HaplotypeScore=2.4511;MQ=57.48;MQ0=0;MQRankSum=-3.662;QD=12.56;ReadPosRankSum=0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:42,34:76:99:985,0,1316
19    49520502    rs1960072    C    T    70.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=-1.221;QD=8.84;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUVBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221413    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,155
19    49526119    rs4002463    T    G    298.56    MQFilter40    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=36;Dels=0.0;FS=23.542;HRun=0;HaplotypeScore=0.0;MQ=34.0;MQ0=1;MQRankSum=1.178;QD=8.29;ReadPosRankSum=0.973;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:22,14:36:99:329,0,385
19    49526191    rs28571120    G    A    107.36    MQFilter40;QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.219;DB;DP=64;Dels=0.0;FS=18.8;HRun=0;HaplotypeScore=0.9983;MQ=26.43;MQ0=8;MQRankSum=2.717;QD=1.68;ReadPosRankSum=-0.076;SNPEFF_AMINO_ACID_CHANGE=S150;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49526128_49526457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:53,10:64:99:137,0,978
19    49526203    rs17852109    G    C    63.25    MQFilter40;QDFilter2    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.017;DB;DP=64;Dels=0.0;FS=15.413;HRun=0;HaplotypeScore=3.4078;MQ=24.78;MQ0=12;MQRankSum=2.784;QD=0.99;ReadPosRankSum=-0.686;SNPEFF_AMINO_ACID_CHANGE=P146;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49526128_49526457;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:55,9:64:93.24:93,0,925
19    49527061    rs4002465    G    C    86.12    MQFilter40    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=36.12;MQ0=4;MQRankSum=1.398;QD=5.74;ReadPosRankSum=-1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:7,8:15:99:116,0,155
19    49527066    rs62126025    T    C    93.87    MQFilter40    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=37.89;MQ0=4;MQRankSum=0.884;QD=4.94;ReadPosRankSum=-1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:9,10:19:99:124,0,269
19    49527128    rs62126026    C    A    498.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.019;DB;DP=56;Dels=0.0;FS=2.585;HRun=0;HaplotypeScore=0.0;MQ=43.58;MQ0=4;MQRankSum=-2.21;QD=8.91;ReadPosRankSum=1.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:32,24:56:99:529,0,1002
19    49527141    rs62126027    T    G    552.05    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.641;DB;DP=64;Dels=0.0;FS=3.748;HRun=2;HaplotypeScore=1.6643;MQ=44.66;MQ0=3;MQRankSum=-1.356;QD=8.63;ReadPosRankSum=-0.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:36,28:64:99:582,0,1159
19    49528768    rs7250766    G    A    179.59    MQFilter40    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=1.643;DB;DP=54;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=0.0;MQ=16.94;MQ0=31;MQRankSum=-0.837;QD=3.33;ReadPosRankSum=-0.465;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:37,17:54:99:210,0,250
19    49528937    rs4802537    T    C    272.45    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.411;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7465;MQ=57.6;MQ0=0;MQRankSum=0.356;QD=10.9;ReadPosRankSum=-1.013;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:14,11:25:99:302,0,412
19    49529379    rs7255292    T    C    99.57    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=5.332;HRun=0;HaplotypeScore=0.5784;MQ=54.03;MQ0=0;MQRankSum=0.135;QD=8.3;ReadPosRankSum=-0.529;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:7,5:12:99:130,0,248
19    49529404    rs2387592    A    G    157.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=16;Dels=0.0;FS=2.363;HRun=3;HaplotypeScore=0.9867;MQ=44.99;MQ0=0;MQRankSum=0.705;QD=9.85;ReadPosRankSum=-0.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357383    GT:AD:DP:GQ:PL    0/1:10,6:16:99:188,0,304
19    49536390    .    C    A    97.13    MQFilter40;QDFilter2    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.547;DP=52;Dels=0.0;FS=18.997;HRun=0;HaplotypeScore=0.0;MQ=27.42;MQ0=11;MQRankSum=-0.765;QD=1.87;ReadPosRankSum=-0.109;SNPEFF_AMINO_ACID_CHANGE=A135D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49536164_49536495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359342    GT:AD:DP:GQ:PL    0/1:37,15:52:99:127,0,678
19    49538665    rs11083958    C    T    33.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=-1.026;QD=8.31;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301407    GT:AD:DP:GQ:PL    0/1:2,2:4:63.22:63,0,71
19    49539560    rs62126040    T    C    119    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=18;Dels=0.0;FS=14.73;HRun=2;HaplotypeScore=0.0;MQ=43.13;MQ0=0;MQRankSum=-2.808;QD=6.61;ReadPosRankSum=-0.272;SNPEFF_AMINO_ACID_CHANGE=R4G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49539393_49539560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301407    GT:AD:DP:GQ:PL    0/1:11,7:18:99:149,0,383
19    49539566    rs35854464    G    A    121.83    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=19;Dels=0.0;FS=14.73;HRun=0;HaplotypeScore=0.0;MQ=44.18;MQ0=0;MQRankSum=-2.916;QD=6.41;ReadPosRankSum=-0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359342    GT:AD:DP:GQ:PL    0/1:12,7:19:99:152,0,381
19    49540093    rs10853805    A    C    111.49    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.034;QD=10.14;ReadPosRankSum=0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359342    GT:AD:DP:GQ:PL    0/1:4,7:11:99:141,0,138
19    49542078    rs4002456    A    G    142.34    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.639;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.047;QD=7.91;ReadPosRankSum=-1.452;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391869    GT:AD:DP:GQ:PL    0/1:12,6:18:99:172,0,430
19    49547323    .    C    A    134.31    MQFilter40    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.348;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.92;MQ0=4;MQRankSum=-0.737;QD=4.2;ReadPosRankSum=-0.432;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355414    GT:AD:DP:GQ:PL    0/1:22,10:32:99:164,0,529
19    49547446    rs12610392    G    C    634.24    MQFilter40    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.749;DB;DP=131;Dels=0.0;FS=1.855;HRun=1;HaplotypeScore=2.4458;MQ=31.19;MQ0=26;MQRankSum=-0.945;QD=4.84;ReadPosRankSum=-0.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355414    GT:AD:DP:GQ:PL    0/1:88,41:131:99:664,0,1461
19    49547645    rs3956245    T    G    150.23    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=33.41;MQ0=4;MQRankSum=-0.289;QD=9.39;ReadPosRankSum=-0.929;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355414    GT:AD:DP:GQ:PL    0/1:4,12:16:99:180,0,126
19    49557482    rs34428621    C    T    483.07    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=34;Dels=0.0;FS=5.775;HRun=0;HaplotypeScore=0.9159;MQ=41.49;MQ0=1;MQRankSum=-2.082;QD=14.21;ReadPosRankSum=0.682;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008687.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451356    GT:AD:DP:GQ:PL    0/1:13,21:34:99:513,0,395
19    49557525    rs143681971    C    T    615.80    MQFilter40    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=50;Dels=0.0;FS=6.477;HRun=0;HaplotypeScore=0.0;MQ=39.08;MQ0=5;MQRankSum=3.674;QD=12.32;ReadPosRankSum=0.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008687.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451356    GT:AD:DP:GQ:PL    0/1:26,24:50:99:646,0,468
19    49557539    rs147231692    G    C    711.08    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.331;DB;DP=58;Dels=0.0;FS=6.328;HRun=0;HaplotypeScore=0.0;MQ=37.92;MQ0=5;MQRankSum=3.368;QD=12.26;ReadPosRankSum=0.188;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008687.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451356    GT:AD:DP:GQ:PL    0/1:29,29:58:99:741,0,522
19    49557636    .    G    T    117.16    MQFilter40    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=0.514;DP=47;Dels=0.0;FS=12.067;HRun=0;HaplotypeScore=0.6651;MQ=27.11;MQ0=11;MQRankSum=0.438;QD=2.49;ReadPosRankSum=0.4;SNPEFF_AMINO_ACID_CHANGE=A135D;SNPEFF_CODON_CHANGE=gCc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49557532_49557862;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356213    GT:AD:DP:GQ:PL    0/1:32,15:47:99:147,0,626
19    49558370    .    C    T    34.50    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-1.92;QD=4.31;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008687.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451356    GT:AD:DP:GQ:PL    0/1:5,3:8:64.49:64,0,158
19    49558447    rs33949355    G    A    341.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.04;MQ0=0;QD=28.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008687.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451356    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:374,30,0
19    49558729    rs12461085    G    C    861.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=27.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008687.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451356    GT:AD:DP:GQ:PL    1/1:0,31:31:78.19:894,78,0
19    49558779    rs12461088    G    C    87.64    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=0.361;QD=9.74;ReadPosRankSum=0.361;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_49558618_49558997;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CGB7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377280    GT:AD:DP:GQ:PL    0/1:4,5:9:99:118,0,137
19    49573362    rs10535426    TGGA    T    828.10    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=3.46;DB;DP=37;FS=2.958;HRun=0;HaplotypeScore=176.8462;IndelType=D;MQ=59.63;MQ0=0;MQRankSum=-1.738;QD=22.38;ReadPosRankSum=0.281;SNPEFF_AMINO_ACID_CHANGE=PP442P;SNPEFF_CODON_CHANGE=cctcca/cca;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_19_49570675_49574135;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221444    GT:AD:DP:GQ:PL    0/1:17,20:37:99:867,0,972
19    49573438    rs1017219    A    G    1073.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.21;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=M418T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49570675_49574135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221444    GT:AD:DP:GQ:PL    1/1:0,32:32:87.27:1107,87,0
19    49573518    rs3810188    G    A    490.88    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.82;DB;DP=30;Dels=0.0;FS=1.462;HRun=0;HaplotypeScore=0.8321;MQ=58.45;MQ0=0;MQRankSum=-1.118;QD=16.36;ReadPosRankSum=0.592;SNPEFF_AMINO_ACID_CHANGE=P391;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49570675_49574135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221444    GT:AD:DP:GQ:PL    0/1:14,16:30:99:521,0,357
19    49574125    rs1611775    G    C    430.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=P189R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49570675_49574135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221444    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:464,39,0
19    49575304    rs77059600    G    A    132.42    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.073;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.259;QD=10.19;ReadPosRankSum=-0.467;SNPEFF_AMINO_ACID_CHANGE=A180V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49575288_49576198;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221444    GT:AD:DP:GQ:PL    0/1:6,7:13:99:162,0,164
19    49575618    rs71352730    A    G    131.58    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.627;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;MQRankSum=-0.471;QD=9.4;ReadPosRankSum=-1.109;SNPEFF_AMINO_ACID_CHANGE=G75;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49575288_49576198;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221444    GT:AD:DP:GQ:PL    0/1:6,8:14:99:162,0,168
19    49593501    rs146646578    A    G    238.30    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=18;Dels=0.0;FS=3.214;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.311;QD=13.24;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221448    GT:AD:DP:GQ:PL    0/1:8,10:18:99:268,0,270
19    49611708    .    G    C    446.70    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.084;QD=14.89;ReadPosRankSum=1.004;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRNP70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438617    GT:AD:DP:GQ:PL    0/1:13,17:30:99:477,0,388
19    49617901    rs35903102    A    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408991    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
19    49619761    rs75408950    C    T    68.59    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.461;QD=5.72;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408991    GT:AD:DP:GQ:PL    0/1:7,5:12:98.58:99,0,178
19    49621592    rs1060967    G    C    1106.54    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.024;DB;DP=90;Dels=0.0;FS=1.705;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.721;QD=12.29;ReadPosRankSum=-0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf73;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408991    GT:AD:DP:GQ:PL    0/1:49,41:90:99:1137,0,1463
19    49621964    rs2232003    T    C    1615.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=S106G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49621655_49622397;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf73;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000408991    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1649,132,0
19    49631100    rs142900711    C    G    114.78    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=20;Dels=0.0;FS=9.26;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=0.453;QD=5.74;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    0/1:12,7:20:99:145,0,295
19    49631502    rs79247105    A    G    132.71    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.198;QD=13.27;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    0/1:3,7:10:47.60:163,0,48
19    49632079    rs4802565    C    A    686.09    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=45;Dels=0.0;FS=3.253;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=15.25;ReadPosRankSum=-0.921;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    0/1:21,24:45:99:716,0,601
19    49632309    rs4802566    T    C    1011.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:1044,78,0
19    49632772    rs1559155    C    T    80.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
19    49636406    .    T    G    76.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.876;DP=26;Dels=0.0;FS=31.547;HRun=5;HaplotypeScore=0.0;MQ=49.11;MQ0=0;MQRankSum=-2.822;QD=2.95;ReadPosRankSum=0.527;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    0/1:14,12:26:99:107,0,424
19    49638190    .    GC    G    128.99    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=6;FS=0.0;HRun=3;HaplotypeScore=20.1252;IndelType=D;MQ=57.94;MQ0=0;MQRankSum=0.736;QD=21.5;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    0/1:1,5:6:24.24:168,0,24
19    49638956    rs745124    C    G    187.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.02;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=-0.533;QD=8.95;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    0/1:12,9:21:99:218,0,394
19    49639948    rs2303052    A    G    57.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:89,6,0
19    49642908    rs75918862    G    A    259.04    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.866;DB;DP=37;Dels=0.0;FS=1.524;HRun=0;HaplotypeScore=0.9332;MQ=58.11;MQ0=0;MQRankSum=0.456;QD=7.0;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    0/1:27,10:37:99:289,0,767
19    49643096    rs45475799    G    T    609.24    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.482;DB;DP=40;Dels=0.0;FS=4.846;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.833;QD=15.23;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    0/1:18,20:40:99:639,0,595
19    49643404    rs3764624    T    C    613.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    1/1:0,18:18:51.14:646,51,0
19    49644840    rs112961847    C    CGTGT    770.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=50.1615;IndelType=I;MQ=51.01;MQ0=0;QD=64.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    1/1:2,9:12:33.11:812,33,0
19    49646006    rs4545921    A    G    1051.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7791;MQ=59.3;MQ0=0;QD=31.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334186    GT:AD:DP:GQ:PL    1/1:0,32:33:81.26:1084,81,0
19    49649051    rs3764625    T    G    298.84    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=0.553;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.352;QD=17.58;ReadPosRankSum=0.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPFIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421230    GT:AD:DP:GQ:PL    0/1:6,11:17:99:329,0,180
19    49649498    rs10421292    C    T    102.92    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=11;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.568;QD=9.36;ReadPosRankSum=1.568;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252825    GT:AD:DP:GQ:PL    0/1:6,5:11:99:133,0,178
19    49651790    rs4802576    G    A    115.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=28.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252825    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
19    49652128    rs112505587    GT    G    192.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=49.3205;IndelType=D;MQ=61.34;MQ0=0;QD=24.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252825    GT:AD:DP:GQ:PL    1/1:1,7:8:21.53:234,22,0
19    49653202    rs35781872    C    T    57.45    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=14.36;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252825    GT:AD:DP:GQ:PL    0/1:1,3:4:24.11:87,0,24
19    49655174    rs1423520    A    T    250.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434964    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:283,21,0
19    49657423    rs113958500    A    G    436.43    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.187;DB;DP=31;Dels=0.0;FS=1.509;HRun=2;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=1.268;QD=14.08;ReadPosRankSum=1.102;SNPEFF_AMINO_ACID_CHANGE=S328P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49657043_49658284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434964    GT:AD:DP:GQ:PL    0/1:15,16:31:99:466,0,477
19    49657526    rs150557795    G    A    43.93    QDFilter2;SnpCluster    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.233;DB;DP=25;Dels=0.0;FS=8.098;HRun=0;HaplotypeScore=0.0;MQ=51.06;MQ0=0;MQRankSum=-3.033;QD=1.76;ReadPosRankSum=-0.9;SNPEFF_AMINO_ACID_CHANGE=D22;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49656884_49657591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391863    GT:AD:DP:GQ:PL    0/1:19,6:25:73.93:74,0,626
19    49657527    rs139584333    T    C    35.74    QDFilter2;SnpCluster    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.1;DB;DP=25;Dels=0.0;FS=8.098;HRun=1;HaplotypeScore=0.0;MQ=51.06;MQ0=0;MQRankSum=-3.233;QD=1.43;ReadPosRankSum=-0.9;SNPEFF_AMINO_ACID_CHANGE=D22G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49656884_49657591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391863    GT:AD:DP:GQ:PL    0/1:19,6:25:65.73:66,0,620
19    49657530    rs144084340    T    C    35.74    QDFilter2;SnpCluster    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=25;Dels=0.0;FS=8.098;HRun=0;HaplotypeScore=0.0;MQ=51.06;MQ0=0;MQRankSum=-3.233;QD=1.43;ReadPosRankSum=-0.7;SNPEFF_AMINO_ACID_CHANGE=Q21R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49656884_49657591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391863    GT:AD:DP:GQ:PL    0/1:19,6:25:65.73:66,0,626
19    49657531    rs146916743    G    C    44.76    QDFilter2;SnpCluster    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=26;Dels=0.0;FS=11.364;HRun=0;HaplotypeScore=0.0;MQ=51.43;MQ0=0;MQRankSum=-2.935;QD=1.72;ReadPosRankSum=-1.301;SNPEFF_AMINO_ACID_CHANGE=Q21E;SNPEFF_CODON_CHANGE=Caa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49656884_49657591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391863    GT:AD:DP:GQ:PL    0/1:19,7:26:74.75:75,0,639
19    49657710    rs66501117    ACAT    A    232.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=55.6309;IndelType=D;MQ=56.62;MQ0=0;QD=16.59;SNPEFF_AMINO_ACID_CHANGE=DV231V;SNPEFF_CODON_CHANGE=gatgtc/gtc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_19_49657043_49658284;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434964    GT:AD:DP:GQ:PL    1/1:9,5:14:21.07:274,21,0
19    49657889    .    T    TTCC    531.70    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.736;DP=28;FS=11.083;HRun=0;HaplotypeScore=105.5603;IndelType=I;MQ=59.17;MQ0=0;MQRankSum=0.165;QD=18.99;ReadPosRankSum=-1.22;SNPEFF_AMINO_ACID_CHANGE=E172GK;SNPEFF_CODON_CHANGE=gaa/gGGAaa;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_19_49657043_49658284;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434964    GT:AD:DP:GQ:PL    0/1:21,7:28:99:571,0,342
19    49658209    rs3745297    A    C    1726.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_AMINO_ACID_CHANGE=S66A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49657043_49658284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434964    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1759,135,0
19    49658367    rs3745298    C    T    1366.14    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.121;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.927;QD=30.36;ReadPosRankSum=0.524;SNPEFF_AMINO_ACID_CHANGE=S43N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49656664_49658681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252825    GT:AD:DP:GQ:PL    1/1:1,44:45:70.13:1399,70,0
19    49658390    rs3745299    T    C    433.95    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.127;DB;DP=39;Dels=0.0;FS=3.182;HRun=2;HaplotypeScore=1.893;MQ=59.41;MQ0=0;MQRankSum=-1.317;QD=11.13;ReadPosRankSum=0.241;SNPEFF_AMINO_ACID_CHANGE=L35;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49656664_49658681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252825    GT:AD:DP:GQ:PL    0/1:22,17:39:99:464,0,697
19    49661295    .    G    A    131.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.312;QD=9.36;ReadPosRankSum=1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:8,6:14:99:161,0,250
19    49661547    rs11882563    A    G    950.10    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.514;DB;DP=85;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7552;MQ=59.51;MQ0=0;MQRankSum=0.826;QD=11.18;ReadPosRankSum=-1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:46,39:85:99:980,0,1359
19    49661582    rs3760664    T    C    1869.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1902,147,0
19    49661678    rs3760665    G    C    142.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=15.83;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:4,5:9:99:173,0,140
19    49670965    .    A    G    181.03    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=52.02;MQ0=0;MQRankSum=0.747;QD=22.63;ReadPosRankSum=-0.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:1,7:8:15.94:211,0,16
19    49671031    .    A    G    223.25    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.891;MQ=46.66;MQ0=0;MQRankSum=-1.423;QD=18.6;ReadPosRankSum=0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:1,10:12:13.57:253,0,14
19    49671151    rs68004247    G    A    632.44    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=63;Dels=0.0;FS=4.636;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;MQRankSum=-1.246;QD=10.04;ReadPosRankSum=2.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:36,26:63:99:662,0,983
19    49671207    rs113984787    G    A    856.81    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.34;DB;DP=78;Dels=0.0;FS=3.217;HRun=0;HaplotypeScore=0.0;MQ=58.46;MQ0=0;MQRankSum=0.632;QD=10.98;ReadPosRankSum=-0.409;SNPEFF_AMINO_ACID_CHANGE=A101T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49671174_49671354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:41,37:78:99:887,0,1341
19    49671212    rs111783027    T    G    871.25    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.56;DB;DP=85;Dels=0.0;FS=5.717;HRun=0;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=-0.185;QD=10.25;ReadPosRankSum=-0.365;SNPEFF_AMINO_ACID_CHANGE=V102;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49671174_49671354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:45,40:85:99:901,0,1427
19    49671771    rs113159745    C    T    182.67    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=27;Dels=0.0;FS=4.328;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.098;QD=6.77;ReadPosRankSum=2.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:20,7:27:99:213,0,561
19    49671980    rs111930830    G    A    68.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=9.82;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=K261;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49671810_49671993;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:3,3:7:98.72:99,0,108
19    49675456    rs74599428    C    T    95.09    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.92;ReadPosRankSum=-1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:8,4:12:99:125,0,292
19    49684787    rs35727661    CTTTTTTTTTT    C    323.01    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=9;FS=0.0;HRun=21;HaplotypeScore=127.5324;IndelType=D;MQ=33.88;MQ0=0;MQRankSum=0.322;QD=35.89;ReadPosRankSum=1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:4,5:9:99:362,0,185
19    49691822    rs909010    T    C    336.57    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.724;QD=11.61;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:16,13:29:99:367,0,520
19    49691870    rs112004068    C    T    646.41    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.481;DB;DP=52;Dels=0.0;FS=1.121;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.104;QD=12.43;ReadPosRankSum=-0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:27,25:52:99:676,0,773
19    49693744    rs182060421    G    C    82.18    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=11.74;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:3,4:7:99:112,0,101
19    49703799    rs182435716    T    G    218.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.325;QD=12.13;ReadPosRankSum=-0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:9,9:18:99:248,0,261
19    49705116    rs11353757    CA    C    493.02    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.084;DB;DP=37;FS=0.0;HRun=4;HaplotypeScore=142.5123;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.106;QD=13.32;ReadPosRankSum=-1.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252826    GT:AD:DP:GQ:PL    0/1:19,18:37:99:532,0,671
19    49797887    rs3214611    TA    T    103.70    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.2;DB;DP=16;FS=0.0;HRun=6;HaplotypeScore=39.5291;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=6.48;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC6A16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335875    GT:AD:DP:GQ:PL    0/1:10,6:16:99:143,0,342
19    49838891    rs354020    C    A    5327.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.44;MQ0=0;QD=32.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311227    GT:AD:DP:GQ:PL    1/1:2,162:164:99:5327,412,0
19    49839015    rs354021    T    C    6040.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=204;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1877;MQ=59.77;MQ0=0;QD=29.61;SNPEFF_AMINO_ACID_CHANGE=I38;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49838971_49839043;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD37;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323906    GT:AD:DP:GQ:PL    1/1:0,204:204:99:6040,484,0
19    49839923    rs354025    G    C    44.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311227    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:75,0,34
19    49841054    rs354026    G    T    1401.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311227    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1435,111,0
19    49845895    rs8108669    C    T    205.37    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.468;DB;DP=13;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=15.8;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323906    GT:AD:DP:GQ:PL    0/1:4,9:13:99:235,0,103
19    49851746    rs33974425    CCAGCTGCAT    C    396.50    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=85.7818;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=-2.45;QD=39.65;ReadPosRankSum=2.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEAD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311227    GT:AD:DP:GQ:PL    0/1:5,5:10:99:436,0,685
19    49867913    rs919364    G    A    668.90    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.641;DB;DP=57;Dels=0.0;FS=1.098;HRun=0;HaplotypeScore=1.7675;MQ=59.6;MQ0=0;MQRankSum=-0.306;QD=11.74;ReadPosRankSum=-0.704;SNPEFF_AMINO_ACID_CHANGE=A29T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49867839_49868011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKKL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221498    GT:AD:DP:GQ:PL    0/1:32,25:57:99:699,0,981
19    49869051    rs2303759    T    G    374.89    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.811;DB;DP=20;Dels=0.0;FS=2.003;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.268;QD=18.74;ReadPosRankSum=-0.543;SNPEFF_AMINO_ACID_CHANGE=M109R;SNPEFF_CODON_CHANGE=aTg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49869050_49869142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKKL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221498    GT:AD:DP:GQ:PL    0/1:8,12:20:99:405,0,193
19    49878115    rs1054770    G    A    222.16    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.227;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=1.065;QD=9.66;ReadPosRankSum=0.355;SNPEFF_AMINO_ACID_CHANGE=G187S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49877974_49878371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKKL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221498    GT:AD:DP:GQ:PL    0/1:15,8:23:99:252,0,439
19    49878196    rs2288481    G    A    464.48    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.738;DB;DP=34;Dels=0.0;FS=1.356;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.378;QD=13.66;ReadPosRankSum=-0.702;SNPEFF_AMINO_ACID_CHANGE=E214K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49877974_49878371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKKL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221498    GT:AD:DP:GQ:PL    0/1:18,16:34:99:494,0,524
19    49894152    rs7256629    C    T    271.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=16;Dels=0.0;FS=6.41;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=16.96;ReadPosRankSum=0.061;SNPEFF_AMINO_ACID_CHANGE=P4;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49894046_49894183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447857    GT:AD:DP:GQ:PL    0/1:4,12:16:99:301,0,110
19    49894217    rs7256984    G    T    129.16    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=9.94;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447857    GT:AD:DP:GQ:PL    0/1:8,5:13:99:159,0,163
19    49897949    rs4802602    T    C    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=6.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447857    GT:AD:DP:GQ:PL    1/1:0,6:7:6.02:76,6,0
19    49899076    rs10405154    G    A    33.72    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=4.21;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=R129Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49899026_49899090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC155;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447857    GT:AD:DP:GQ:PL    0/1:5,3:8:63.71:64,0,167
19    49900877    rs9304688    A    G    623.29    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.572;DB;DP=56;Dels=0.0;FS=5.369;HRun=1;HaplotypeScore=0.9665;MQ=59.59;MQ0=0;MQRankSum=0.627;QD=11.13;ReadPosRankSum=-0.129;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447857    GT:AD:DP:GQ:PL    0/1:34,22:56:99:653,0,1164
19    49901125    rs12977735    C    T    315.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.591;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.642;QD=14.34;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC155;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447857    GT:AD:DP:GQ:PL    0/1:11,11:22:99:345,0,381
19    49901318    rs10421748    T    C    678.56    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.079;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.42;MQ0=0;MQRankSum=-0.317;QD=21.21;ReadPosRankSum=1.785;SNPEFF_AMINO_ACID_CHANGE=L183;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49901239_49901400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC155;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447857    GT:AD:DP:GQ:PL    0/1:11,21:32:99:709,0,349
19    49935927    rs77320440    A    AG    588.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=3;HaplotypeScore=35.4353;IndelType=I;MQ=60.0;MQ0=0;QD=39.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221485    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:631,45,0
19    49940131    rs3826718    G    C    55.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=7.98;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221485    GT:AD:DP:GQ:PL    0/1:3,4:7:85.84:86,0,109
19    49949589    rs1043263    A    T    289.49    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.15;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.27;ReadPosRankSum=-0.317;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221485    GT:AD:DP:GQ:PL    0/1:20,15:35:99:319,0,690
19    49950298    rs13394    C    T    1395.63    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.513;DB;DP=93;Dels=0.0;FS=1.718;HRun=2;HaplotypeScore=1.9497;MQ=58.95;MQ0=0;MQRankSum=-0.02;QD=15.01;ReadPosRankSum=0.909;SNPEFF_AMINO_ACID_CHANGE=V224I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49950281_49950356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIH1D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262265    GT:AD:DP:GQ:PL    0/1:45,48:93:99:1426,0,1186
19    49950356    rs12443    C    G    842.46    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=0.599;DB;DP=66;Dels=0.0;FS=1.077;HRun=2;HaplotypeScore=0.8667;MQ=58.95;MQ0=0;MQRankSum=0.243;QD=12.76;ReadPosRankSum=-1.059;SNPEFF_AMINO_ACID_CHANGE=G204;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49950281_49950356;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIH1D1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262265    GT:AD:DP:GQ:PL    0/1:31,35:66:99:872,0,950
19    49954803    rs2293013    C    T    651.65    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.162;DB;DP=61;Dels=0.0;FS=2.58;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;MQRankSum=0.255;QD=10.68;ReadPosRankSum=-0.301;SNPEFF_AMINO_ACID_CHANGE=G10E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49954742_49955115;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIH1D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262265    GT:AD:DP:GQ:PL    0/1:37,24:61:99:682,0,1020
19    49954807    rs2293012    T    G    639.71    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=59;Dels=0.0;FS=2.602;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.51;QD=10.84;ReadPosRankSum=0.286;SNPEFF_AMINO_ACID_CHANGE=M9L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49954742_49955115;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIH1D1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262265    GT:AD:DP:GQ:PL    0/1:36,23:59:99:670,0,1016
19    49962110    rs192949947    G    T    1205.69    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.165;DB;DP=85;Dels=0.0;FS=4.819;HRun=0;HaplotypeScore=3.6562;MQ=59.24;MQ0=0;MQRankSum=1.277;QD=14.18;ReadPosRankSum=0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293350    GT:AD:DP:GQ:PL    0/1:39,45:85:99:1236,0,1170
19    49962892    rs62128062    G    A    381.62    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.973;DB;DP=28;Dels=0.0;FS=4.494;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.812;QD=13.63;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293350    GT:AD:DP:GQ:PL    0/1:16,12:28:99:412,0,431
19    49964977    rs1320303    C    G    62.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.68;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=L227V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49964876_49965057;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH16A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000293350    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:93,0,29
19    49965653    rs2914663    A    G    175.08    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9632;MQ=57.82;MQ0=0;MQRankSum=-0.831;QD=13.47;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293350    GT:AD:DP:GQ:PL    0/1:6,7:13:99:205,0,174
19    49967808    rs34601909    C    T    330.72    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.411;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.241;QD=8.27;ReadPosRankSum=0.326;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH16A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293350    GT:AD:DP:GQ:PL    0/1:26,14:40:99:361,0,754
19    49967981    rs11558188    T    G    925.61    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=0.451;DB;DP=87;Dels=0.0;FS=0.863;HRun=0;HaplotypeScore=1.7608;MQ=59.2;MQ0=0;MQRankSum=-0.159;QD=10.64;ReadPosRankSum=1.7;SNPEFF_AMINO_ACID_CHANGE=V345;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49967889_49968019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH16A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433981    GT:AD:DP:GQ:PL    0/1:52,35:87:99:956,0,1540
19    49969085    rs10853810    C    T    184.52    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.194;DB;DP=26;Dels=0.0;FS=1.757;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=7.1;ReadPosRankSum=-0.028;SNPEFF_AMINO_ACID_CHANGE=N388;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49968995_49969162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALDH16A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433981    GT:AD:DP:GQ:PL    0/1:18,8:26:99:215,0,619
19    49993535    rs1064257    C    G    361.08    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.86;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.406;QD=9.76;ReadPosRankSum=1.12;SNPEFF_AMINO_ACID_CHANGE=G45;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_49993489_49993554;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391857    GT:AD:DP:GQ:PL    0/1:23,14:37:99:391,0,645
19    50003014    rs12052105    T    C    95.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=7.98;ReadPosRankSum=-0.536;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270625    GT:AD:DP:GQ:PL    0/1:8,4:12:99:126,0,280
19    50093454    rs4429389    A    T    425.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246794    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:458,36,0
19    50140068    rs1368464    C    T    708.08    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.388;DB;DP=62;Dels=0.0;FS=9.475;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.725;QD=11.42;ReadPosRankSum=-1.571;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246792    GT:AD:DP:GQ:PL    0/1:32,30:62:99:738,0,907
19    50140092    rs1865077    G    A    976.59    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=67;Dels=0.0;FS=3.429;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.465;QD=14.58;ReadPosRankSum=0.132;SNPEFF_AMINO_ACID_CHANGE=N111;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50140081_50140183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246792    GT:AD:DP:GQ:PL    0/1:36,31:67:99:1007,0,894
19    50140209    rs1368463    C    T    264.40    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.044;DB;DP=33;Dels=0.0;FS=3.676;HRun=1;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;MQRankSum=-1.135;QD=8.01;ReadPosRankSum=-1.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246792    GT:AD:DP:GQ:PL    0/1:20,12:33:99:294,0,637
19    50140246    rs1865076    C    A    176.29    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.858;DB;DP=19;Dels=0.0;FS=1.984;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.289;QD=9.28;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246792    GT:AD:DP:GQ:PL    0/1:11,8:19:99:206,0,387
19    50156896    rs10401743    T    C    448.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.4;SNPEFF_AMINO_ACID_CHANGE=L1084;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50154125_50156962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360565    GT:AD:DP:GQ:PL    1/1:0,17:17:36.12:482,36,0
19    50168174    rs34739574    C    T    72.96    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=14.59;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377139    GT:AD:DP:GQ:PL    0/1:2,3:5:66.91:103,0,67
19    50183980    rs1433102    T    C    42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=8.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525915    GT:AD:DP:GQ:PL    1/1:0,5:5:8.98:74,9,0
19    50183981    rs1368462    T    C    42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=10.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525915    GT:AD:DP:GQ:PL    1/1:0,4:4:8.98:74,9,0
19    50187079    rs7260179    A    G    88.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=14.71;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525915    GT:AD:DP:GQ:PL    0/1:2,4:6:54.73:118,0,55
19    50189156    rs10415880    G    A    89.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525616    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    50204438    rs12982733    T    C    35.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295404    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:66,0,33
19    50204843    rs12973248    G    A    152.95    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.58;QD=6.65;ReadPosRankSum=0.444;SNPEFF_AMINO_ACID_CHANGE=S215;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50204754_50204891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323446    GT:AD:DP:GQ:PL    0/1:15,8:23:99:183,0,447
19    50208154    .    G    T    256.82    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.003;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.296;QD=23.35;ReadPosRankSum=-0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295404    GT:AD:DP:GQ:PL    0/1:2,9:11:51.33:287,0,51
19    50208180    rs12984650    G    T    367.39    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.265;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=57.39;MQ0=0;MQRankSum=1.115;QD=20.41;ReadPosRankSum=0.478;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295404    GT:AD:DP:GQ:PL    0/1:4,14:18:99:397,0,107
19    50209095    rs7249356    T    G    645.18    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.039;DB;DP=42;Dels=0.0;FS=2.175;HRun=0;HaplotypeScore=0.9789;MQ=59.45;MQ0=0;MQRankSum=0.248;QD=15.36;ReadPosRankSum=-0.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295404    GT:AD:DP:GQ:PL    0/1:20,22:42:99:675,0,659
19    50209653    rs12978911    C    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_AMINO_ACID_CHANGE=A313;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50209488_50209670;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000295404    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
19    50216118    rs78609265    T    TG    1793.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=3;HaplotypeScore=147.1996;IndelType=I;MQ=60.42;MQ0=0;QD=37.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000295404    GT:AD:DP:GQ:PL    1/1:3,45:48:99:1836,132,0
19    50250872    rs8109529    G    A    216.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246801    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:249,21,0
19    50265230    rs1273634    C    T    99.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.259;QD=8.31;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246801    GT:AD:DP:GQ:PL    0/1:6,6:12:99:130,0,186
19    50265549    rs3745477    T    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSKS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246801    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    50304336    rs78620167    A    G    68.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=4.771;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=11.38;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354293    GT:AD:DP:GQ:PL    0/1:2,4:6:65.39:98,0,65
19    50305688    rs2159984    G    C    254.78    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.898;QD=25.48;ReadPosRankSum=-0.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313777    GT:AD:DP:GQ:PL    0/1:2,8:10:43.87:285,0,44
19    50309766    .    T    C    34.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5572;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=8.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313777    GT:AD:DP:GQ:PL    0/1:2,2:4:64.04:64,0,70
19    50309860    rs35344605    TC    T    206.48    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=0.512;DB;DP=23;FS=2.205;HRun=2;HaplotypeScore=99.3691;IndelType=D;MQ=59.47;MQ0=0;MQRankSum=-0.853;QD=8.98;ReadPosRankSum=0.034;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313777    GT:AD:DP:GQ:PL    0/1:15,8:23:99:246,0,555
19    50315423    rs8104825    G    A    71.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.89;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526435    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,102
19    50315698    rs2305919    A    C    95.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=9.55;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313777    GT:AD:DP:GQ:PL    0/1:6,4:10:99:125,0,210
19    50315773    rs2305918    T    A    230.06    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=17.7;ReadPosRankSum=0.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313777    GT:AD:DP:GQ:PL    0/1:5,8:13:99:260,0,161
19    50316083    rs35816883    C    T    210.18    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.267;QD=15.01;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FUZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313777    GT:AD:DP:GQ:PL    0/1:5,9:14:99:240,0,134
19    50331678    rs5828413    CT    C    997.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.645;DB;DP=62;FS=0.0;HRun=1;HaplotypeScore=202.6479;IndelType=D;MQ=59.78;MQ0=0;MQRankSum=-0.249;QD=16.09;ReadPosRankSum=1.104;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312865    GT:AD:DP:GQ:PL    0/1:31,31:62:99:1037,0,1200
19    50358170    rs1290657    T    C    91.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTOV1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221557    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:124,12,0
19    50363175    rs1290646    A    G    145.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=14;Dels=0.0;FS=3.358;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.935;QD=10.36;ReadPosRankSum=0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNKP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322344    GT:AD:DP:GQ:PL    0/1:8,6:14:99:175,0,240
19    50368361    rs1290649    T    A    110.42    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=15;Dels=0.0;FS=6.56;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.0;QD=7.36;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344175    GT:AD:DP:GQ:PL    0/1:9,5:15:99:140,0,245
19    50375035    rs2290774    T    C    499.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.792;DB;DP=34;Dels=0.0;FS=1.5;HRun=3;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.162;QD=14.69;ReadPosRankSum=1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391830    GT:AD:DP:GQ:PL    0/1:17,17:34:99:529,0,469
19    50375242    rs2290775    C    T    159.44    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=14.49;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKT1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391830    GT:AD:DP:GQ:PL    0/1:5,6:11:97.71:189,0,98
19    50383591    rs8109661    A    G    1180.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.06;SNPEFF_AMINO_ACID_CHANGE=D51G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50383536_50383659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535102    GT:AD:DP:GQ:PL    1/1:0,38:38:90.28:1213,90,0
19    50383636    rs3745486    T    C    215.58    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=28;Dels=0.0;FS=1.711;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.599;QD=7.7;ReadPosRankSum=-0.216;SNPEFF_AMINO_ACID_CHANGE=L66P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50383536_50383659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D17;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535102    GT:AD:DP:GQ:PL    0/1:18,10:28:99:246,0,572
19    50386340    rs746738    T    C    324.74    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.444;DB;DP=22;Dels=0.0;FS=7.282;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.853;QD=14.76;ReadPosRankSum=-0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221543    GT:AD:DP:GQ:PL    0/1:8,14:22:99:355,0,237
19    50387729    rs35681527    C    T    579.62    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.798;DB;DP=70;Dels=0.0;FS=3.5;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.242;QD=8.28;ReadPosRankSum=-0.445;SNPEFF_AMINO_ACID_CHANGE=G386;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50387716_50387816;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535102    GT:AD:DP:GQ:PL    0/1:43,27:70:99:610,0,1380
19    50393668    .    C    G    139.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.663;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=8.75;ReadPosRankSum=1.154;SNPEFF_AMINO_ACID_CHANGE=T321;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50392916_50393857;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4I1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391826    GT:AD:DP:GQ:PL    0/1:8,8:16:99:170,0,174
19    50398939    rs1290751    A    G    83.63    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=9.29;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL4I1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341114    GT:AD:DP:GQ:PL    0/1:5,4:9:99:114,0,158
19    50411742    rs892028    A    G    1989.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.09;SNPEFF_AMINO_ACID_CHANGE=D441;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50410086_50413141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352066    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2022,162,0
19    50412217    rs79747934    C    G    348.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.137;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.161;QD=12.46;ReadPosRankSum=-0.666;SNPEFF_AMINO_ACID_CHANGE=S283T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50410086_50413141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352066    GT:AD:DP:GQ:PL    0/1:14,14:28:99:379,0,401
19    50412417    rs999583    G    A    1410.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=28.79;SNPEFF_AMINO_ACID_CHANGE=S216;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50410086_50413141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352066    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1444,114,0
19    50435747    rs283525    T    C    1342.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=56.76;MQ0=0;QD=26.33;SNPEFF_AMINO_ACID_CHANGE=L83;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50435679_50437192;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423777    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1376,117,0
19    50435862    rs283526    C    T    554.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=53.67;MQ0=0;QD=24.1;SNPEFF_AMINO_ACID_CHANGE=P121L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50435679_50437192;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423777    GT:AD:DP:GQ:PL    1/1:2,21:23:48.14:587,48,0
19    50436371    rs8667    G    A    162.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=8.751;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.365;QD=16.26;ReadPosRankSum=0.365;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SIGLEC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451973    GT:AD:DP:GQ:PL    0/1:4,6:10:87.81:193,0,88
19    50474938    rs138936320    C    G    1153.79    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.808;DB;DP=105;Dels=0.0;FS=1.61;HRun=0;HaplotypeScore=2.5974;MQ=52.27;MQ0=0;MQRankSum=-0.126;QD=10.99;ReadPosRankSum=1.172;SNPEFF_AMINO_ACID_CHANGE=L330V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50474924_50474971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000456956    GT:AD:DP:GQ:PL    0/1:59,46:105:99:1184,0,1863
19    50496281    rs113770287    G    GAC    538.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=21.1465;IndelType=I;MQ=57.66;MQ0=0;QD=53.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VRK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316763    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:580,30,0
19    50657786    rs66651303    AG    A    318.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=4;HaplotypeScore=24.1709;IndelType=D;MQ=61.07;MQ0=0;QD=31.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IZUMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293405    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:360,30,0
19    50665984    rs73932425    C    G    954.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IZUMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293405    GT:AD:DP:GQ:PL    1/1:0,27:28:75.24:988,75,0
19    50666389    rs61742305    G    A    337.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=28.12;SNPEFF_AMINO_ACID_CHANGE=C21;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50666220_50666452;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IZUMO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000293405    GT:AD:DP:GQ:PL    1/1:0,11:12:30.08:370,30,0
19    50720795    rs10412634    G    A    1393.88    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.828;DB;DP=105;Dels=0.0;FS=1.561;HRun=0;HaplotypeScore=3.6363;MQ=60.0;MQ0=0;MQRankSum=0.376;QD=13.28;ReadPosRankSum=0.802;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:58,47:105:99:1424,0,1905
19    50726319    rs12609315    C    G    1530.78    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.602;DB;DP=161;Dels=0.0;FS=7.152;HRun=0;HaplotypeScore=0.9983;MQ=59.45;MQ0=0;MQRankSum=0.764;QD=9.51;ReadPosRankSum=-0.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:95,65:161:99:1561,0,2884
19    50726459    rs654877    T    C    1008.36    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.864;DB;DP=86;Dels=0.0;FS=1.88;HRun=2;HaplotypeScore=1.9134;MQ=59.19;MQ0=0;MQRankSum=0.625;QD=11.73;ReadPosRankSum=0.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1038,0,1521
19    50726570    rs4801822    G    A    659.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.383;DB;DP=42;Dels=0.0;FS=1.505;HRun=0;HaplotypeScore=0.7887;MQ=59.45;MQ0=0;MQRankSum=-1.477;QD=15.71;ReadPosRankSum=-0.657;SNPEFF_AMINO_ACID_CHANGE=A219;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50726504_50726606;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:18,24:42:99:690,0,519
19    50727187    rs7258647    G    A    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    50727312    rs7258667    C    T    382.60    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.327;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=58.71;MQ0=0;MQRankSum=0.796;QD=21.26;ReadPosRankSum=0.372;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:4,14:18:71.80:413,0,72
19    50727668    rs1017689    A    G    126.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
19    50727685    rs4538112    A    G    110    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=27.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
19    50728148    rs61389250    G    A    135.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.365;QD=13.54;ReadPosRankSum=-1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:4,6:10:99:165,0,141
19    50728955    rs12983888    G    A    325.17    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.023;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=17.11;ReadPosRankSum=-1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:8,11:19:99:355,0,210
19    50730047    rs144090543    TG    T    166.78    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;FS=0.0;HRun=7;HaplotypeScore=30.3115;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=12.83;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:5,8:13:99:206,0,145
19    50735024    rs34062561    C    T    254.66    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=-0.696;QD=19.59;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:5,8:13:99:285,0,130
19    50735340    rs11666328    C    T    497.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DB;DP=27;Dels=0.0;FS=10.101;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.952;QD=18.43;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:9,18:27:99:528,0,243
19    50750419    rs607227    C    T    490.90    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=4.1;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.92;MQ0=0;MQRankSum=0.83;QD=11.42;ReadPosRankSum=-1.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:21,22:43:99:521,0,480
19    50753279    rs4802676    C    T    80.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=13.42;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:3,3:6:32.73:110,0,33
19    50762117    rs2445814    A    C    46.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
19    50763889    rs12981413    C    T    515.09    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.682;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=58.89;MQ0=0;MQRankSum=0.152;QD=12.26;ReadPosRankSum=0.834;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:23,19:42:99:545,0,693
19    50764017    .    T    TGC    300.56    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.381;DP=17;FS=0.0;HRun=0;HaplotypeScore=81.6993;IndelType=I;MQ=57.9;MQ0=0;MQRankSum=0.212;QD=17.68;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:10,7:17:99:340,0,176
19    50765018    rs1670721    G    C    43.62    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.9;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:1,3:4:30.22:74,0,30
19    50765019    rs58039297    T    C    49.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=12.38;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:1,3:4:29.74:80,0,30
19    50766707    rs1529492    T    C    73.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.26;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:2,4:6:66.19:104,0,66
19    50771609    rs3745504    G    A    201.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.85;SNPEFF_AMINO_ACID_CHANGE=L1006;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50771418_50771624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:235,18,0
19    50771635    rs930086    T    C    79.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
19    50775742    rs1651543    A    G    44.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
19    50779988    rs788337    A    T    792.97    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.838;DB;DP=69;Dels=0.0;FS=4.915;HRun=1;HaplotypeScore=0.7887;MQ=59.67;MQ0=0;MQRankSum=-0.318;QD=11.49;ReadPosRankSum=1.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:41,28:69:99:823,0,1217
19    50780186    rs7259185    G    A    205.66    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.74;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.37;QD=17.14;ReadPosRankSum=-0.925;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    0/1:3,9:12:96.01:236,0,96
19    50796352    rs651044    C    A    86.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    50796905    rs3745509    G    A    1867.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.29;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=S1553;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50796821_50796944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376965    GT:AD:DP:GQ:PL    1/1:0,58:59:99:1900,138,0
19    50796960    rs3745510    C    T    2085.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2119,157,0
19    50797131    rs4801826    A    G    282.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:315,24,0
19    50805138    rs3826772    C    T    418.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262269    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:451,33,0
19    50812221    rs889002    A    G    484.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.63;MQ0=0;QD=28.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376959    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:518,45,0
19    50813169    rs12978083    A    C    316.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376959    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:349,27,0
19    50813263    rs627491    T    G    123.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376959    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
19    50837397    .    C    T    151.06    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.18;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542413    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:181,0,23
19    50839978    rs3745513    G    A    542.92    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.038;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.39;MQ0=0;MQRankSum=0.161;QD=14.29;ReadPosRankSum=-0.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542413    GT:AD:DP:GQ:PL    0/1:18,20:38:99:573,0,555
19    50848025    rs59323905    G    A    96.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.05;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542413    GT:AD:DP:GQ:PL    0/1:2,4:6:64.95:126,0,65
19    50863023    rs638294    A    G    603.81    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=40;Dels=0.0;FS=4.786;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.082;QD=15.1;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=P255;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50862997_50863119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPSA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253719    GT:AD:DP:GQ:PL    0/1:17,23:40:99:634,0,505
19    50865535    rs676314    A    G    297.08    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=29;Dels=0.0;FS=1.52;HRun=2;HaplotypeScore=0.734;MQ=59.36;MQ0=0;MQRankSum=0.153;QD=10.24;ReadPosRankSum=-1.425;SNPEFF_AMINO_ACID_CHANGE=I40T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50865429_50865570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPSA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253719    GT:AD:DP:GQ:PL    0/1:16,13:29:99:327,0,475
19    50868754    rs1274517    A    G    273.97    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.525;DB;DP=23;Dels=0.0;FS=1.59;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=11.91;ReadPosRankSum=-0.197;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253719    GT:AD:DP:GQ:PL    0/1:12,11:23:99:304,0,326
19    50880741    rs2695121    T    C    61.52    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=7.69;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253727    GT:AD:DP:GQ:PL    0/1:5,3:8:91.51:92,0,172
19    50881326    rs28514894    T    C    2331.91    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=153;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=8.412;MQ=59.7;MQ0=0;MQRankSum=-1.17;QD=15.24;ReadPosRankSum=0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253727    GT:AD:DP:GQ:PL    0/1:76,77:153:99:2362,0,2454
19    50881820    rs55652650    A    AAAC    1517.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;DB;DP=40;FS=13.367;HRun=0;HaplotypeScore=183.6835;IndelType=I;MQ=56.85;MQ0=0;MQRankSum=-1.746;QD=37.94;ReadPosRankSum=2.567;SNPEFF_AMINO_ACID_CHANGE=K172KQ;SNPEFF_CODON_CHANGE=aaa/aAACaa;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_19_50881779_50882053;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253727    GT:AD:DP:GQ:PL    1/1:25,15:40:4.45:1557,4,0
19    50881822    rs112359270    A    ACAG    1668.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.0;HRun=0;HaplotypeScore=188.13;IndelType=I;MQ=56.93;MQ0=0;QD=40.7;SNPEFF_AMINO_ACID_CHANGE=-173Q;SNPEFF_CODON_CHANGE=-/CAG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_19_50881779_50882053;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253727    GT:AD:DP:GQ:PL    1/1:21,18:41:99:1711,111,0
19    50882169    rs2248949    A    G    309.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.558;DB;DP=28;Dels=0.0;FS=1.598;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.461;QD=11.06;ReadPosRankSum=-1.917;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253727    GT:AD:DP:GQ:PL    0/1:14,14:28:99:340,0,465
19    50882172    rs41432149    C    T    348.02    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.938;DB;DP=29;Dels=0.0;FS=3.352;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.069;QD=12.0;ReadPosRankSum=-1.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253727    GT:AD:DP:GQ:PL    0/1:15,14:29:99:378,0,480
19    50882918    rs2303045    G    C    35.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=8.92;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NR1H2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253727    GT:AD:DP:GQ:PL    0/1:2,2:4:30.98:66,0,31
19    50909329    rs41559717    C    T    189.04    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.11;DB;DP=23;Dels=0.0;FS=2.78;HRun=1;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-1.039;QD=8.22;ReadPosRankSum=-1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376930    GT:AD:DP:GQ:PL    0/1:14,9:23:99:219,0,483
19    50909389    rs1673041    T    G    1709.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376930    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1742,126,0
19    50919797    rs3218776    C    T    130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376930    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
19    50922370    rs2244095    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376930    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    50926264    rs1673030    T    C    611.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=17.48;SNPEFF_AMINO_ACID_CHANGE=P103;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50926080_50926294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270632    GT:AD:DP:GQ:PL    1/1:0,35:35:68.94:645,69,0
19    50926265    rs11546996    G    C    608.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.89;SNPEFF_AMINO_ACID_CHANGE=A104P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50926080_50926294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270632    GT:AD:DP:GQ:PL    1/1:0,34:34:68.94:641,69,0
19    50926742    rs3745516    A    G    199.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPIB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270632    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:232,18,0
19    50938385    rs11669020    C    A    108.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.779;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=9.06;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357701    GT:AD:DP:GQ:PL    0/1:6,6:12:99:139,0,216
19    50939844    rs117858598    G    A    423.64    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.887;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6809;MQ=60.0;MQ0=0;MQRankSum=1.309;QD=14.12;ReadPosRankSum=0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357701    GT:AD:DP:GQ:PL    0/1:14,16:30:99:454,0,348
19    50939867    rs2004423    G    A    383.74    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.379;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-1.42;QD=11.63;ReadPosRankSum=1.688;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357701    GT:AD:DP:GQ:PL    0/1:20,13:33:99:414,0,601
19    50954584    rs8105250    C    T    234.93    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=17;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.722;QD=13.82;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357701    GT:AD:DP:GQ:PL    0/1:9,8:17:99:265,0,224
19    50957397    rs25665    G    A    235.89    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.536;DB;DP=23;Dels=0.0;FS=1.768;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.26;ReadPosRankSum=0.134;SNPEFF_AMINO_ACID_CHANGE=V624I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50957277_50957436;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357701    GT:AD:DP:GQ:PL    0/1:13,10:23:99:266,0,385
19    50962062    rs3745518    G    A    249.91    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=17;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.376;QD=14.7;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357701    GT:AD:DP:GQ:PL    0/1:7,10:17:99:280,0,197
19    50965272    rs25668    T    C    254.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=22;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.657;QD=11.56;ReadPosRankSum=-1.839;SNPEFF_AMINO_ACID_CHANGE=C1069;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50965157_50965293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357701    GT:AD:DP:GQ:PL    0/1:11,11:22:99:284,0,319
19    50967640    rs25667    G    A    755.14    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=2.401;DB;DP=44;Dels=0.0;FS=6.684;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.137;QD=17.16;ReadPosRankSum=-0.632;SNPEFF_AMINO_ACID_CHANGE=R1089H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_50967603_50967789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBPC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357701    GT:AD:DP:GQ:PL    0/1:21,23:44:99:785,0,499
19    50969325    rs1274604    A    G    79.27    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.82;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM71E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270620    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:109,0,29
19    51015404    rs12977172    T    C    104.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.02;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=Q161R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51015393_51015547;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPDH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376916    GT:AD:DP:GQ:PL    0/1:4,4:8:99:134,0,101
19    51017835    rs889131    G    A    804.38    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.098;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.18;MQ0=0;MQRankSum=1.699;QD=14.9;ReadPosRankSum=1.343;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389201    GT:AD:DP:GQ:PL    0/1:28,26:54:99:834,0,823
19    51020903    rs61751956    A    G    126.60    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6553;MQ=56.85;MQ0=0;MQRankSum=0.529;QD=8.44;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=W397R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51020829_51020903;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535879    GT:AD:DP:GQ:PL    0/1:6,9:15:99:157,0,141
19    51051574    rs12984761    C    T    36.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRC4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389201    GT:AD:DP:GQ:PL    0/1:2,2:4:35.74:67,0,36
19    51128856    rs10426057    A    C    182.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338916    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:216,18,0
19    51132942    rs77203708    G    A    199.94    MQFilter40;SnpCluster    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=10;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.9983;MQ=32.06;MQ0=0;MQRankSum=0.348;QD=19.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338916    GT:AD:DP:GQ:PL    0/1:1,9:10:6.39:229,0,6
19    51132944    rs78874429    G    A    146.52    MQFilter40;SnpCluster    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9966;MQ=32.06;MQ0=0;MQRankSum=0.762;QD=14.65;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338916    GT:AD:DP:GQ:PL    0/1:3,7:10:35.08:177,0,35
19    51132952    rs79968630    G    A    175.35    MQFilter40;SnpCluster    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=1.9966;MQ=36.54;MQ0=0;MQRankSum=0.48;QD=17.54;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338916    GT:AD:DP:GQ:PL    0/1:2,8:10:39.82:205,0,40
19    51132979    rs10406994    G    A    428.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.22;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338916    GT:AD:DP:GQ:PL    1/1:0,13:13:39.08:462,39,0
19    51133356    rs10407511    C    G    750.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.444;MQ=59.2;MQ0=0;QD=25.88;SNPEFF_AMINO_ACID_CHANGE=R249;SNPEFF_CODON_CHANGE=cgG/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51133041_51133428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338916    GT:AD:DP:GQ:PL    1/1:0,28:29:60.19:784,60,0
19    51133521    rs10407942    C    T    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338916    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    51159571    rs4801844    T    G    621.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_AMINO_ACID_CHANGE=S58A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51159483_51159603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008743.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458538    GT:AD:DP:GQ:PL    1/1:0,23:23:48.16:654,48,0
19    51170706    rs3745521    A    G    249.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=V1495A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51169449_51172542;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359082    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
19    51171188    rs750578    G    A    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.21;SNPEFF_AMINO_ACID_CHANGE=T1334;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51169449_51172542;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359082    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:84,6,0
19    51191172    rs12975345    A    G    382.70    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.756;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=11.6;ReadPosRankSum=-1.747;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293441    GT:AD:DP:GQ:PL    0/1:16,17:33:99:413,0,464
19    51191330    .    C    A    695.92    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.104;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.265;QD=12.0;ReadPosRankSum=0.078;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293441    GT:AD:DP:GQ:PL    0/1:27,31:58:99:726,0,773
19    51216909    rs7246004    T    G    84.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.741;QD=8.49;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293441    GT:AD:DP:GQ:PL    0/1:6,4:10:99:115,0,194
19    51217550    rs3745530    G    A    340    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=21.25;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000293441    GT:AD:DP:GQ:PL    0/1:5,11:16:99:370,0,164
19    51262620    rs10424138    A    C    1894.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;DB;DP=62;Dels=0.0;FS=6.173;HRun=1;HaplotypeScore=1.57;MQ=43.44;MQ0=4;MQRankSum=1.673;QD=30.56;ReadPosRankSum=-1.553;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,60:62:99:1928,136,0
19    51262668    rs12983009    C    T    1032.09    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.2;MQ0=6;QD=25.8;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,38:39:96.26:1065,96,0
19    51275044    rs12971591    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.74;MQ0=4;QD=5.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270590    GT:AD:DP:GQ:PL    1/1:0,6:6:6.02:67,6,0
19    51289797    rs60471273    G    A    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270593    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    51289858    rs11882802    G    T    112.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.79;ReadPosRankSum=1.38;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270593    GT:AD:DP:GQ:PL    0/1:2,4:6:60.97:143,0,61
19    51290108    .    TACACACACACAC    T    2224.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;FS=0.0;HRun=0;HaplotypeScore=1006.9843;IndelType=D;MQ=48.81;MQ0=0;MQRankSum=0.0;QD=30.47;ReadPosRankSum=-0.578;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270593    GT:AD:DP:GQ:PL    1/1:39,25:73:97.42:2266,97,0
19    51290173    rs73584983    A    G    268.52    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.602;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.24;MQ0=0;MQRankSum=-1.86;QD=6.71;ReadPosRankSum=-1.669;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270593    GT:AD:DP:GQ:PL    0/1:23,17:40:99:299,0,641
19    51294773    rs10412900    A    G    425.19    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.815;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=59.53;MQ0=0;MQRankSum=-1.089;QD=8.68;ReadPosRankSum=1.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270593    GT:AD:DP:GQ:PL    0/1:31,18:49:99:455,0,1128
19    51296851    rs266124    G    A    207.31    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DB;DP=20;Dels=0.0;FS=3.197;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.076;QD=10.37;ReadPosRankSum=1.595;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345523    GT:AD:DP:GQ:PL    0/1:11,9:20:99:237,0,302
19    51297944    rs266123    A    G    282.29    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.047;DB;DP=28;Dels=0.0;FS=1.685;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=1.223;QD=10.08;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345523    GT:AD:DP:GQ:PL    0/1:17,11:28:99:312,0,562
19    51302716    rs3810284    G    A    67.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=8.45;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270593    GT:AD:DP:GQ:PL    0/1:4,4:8:97.63:98,0,128
19    51305550    rs2659064    G    A    72.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345523    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:105,9,0
19    51321813    rs2411334    A    G    59.88    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.214;QD=5.44;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=V80;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51321391_51322131;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010325.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326989    GT:AD:DP:GQ:PL    0/1:7,4:11:89.87:90,0,203
19    51323473    rs5516    C    G    913.83    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=0.518;DB;DP=53;Dels=0.0;FS=2.587;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=17.24;ReadPosRankSum=-0.518;SNPEFF_AMINO_ACID_CHANGE=E145Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51323410_51323699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301420    GT:AD:DP:GQ:PL    0/1:21,32:53:99:944,0,636
19    51323501    rs1054713    A    G    900.58    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.469;DB;DP=55;Dels=0.0;FS=6.138;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.45;QD=16.37;ReadPosRankSum=0.891;SNPEFF_AMINO_ACID_CHANGE=D135;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51323410_51323699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301420    GT:AD:DP:GQ:PL    0/1:24,31:55:99:931,0,746
19    51323881    rs2659103    T    G    118.02    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=14.75;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010325.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326989    GT:AD:DP:GQ:PL    0/1:2,6:8:59.30:148,0,59
19    51323947    rs2659104    A    G    72.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.54;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010325.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326989    GT:AD:DP:GQ:PL    0/1:2,3:5:64.27:103,0,64
19    51327063    rs36217621    G    C    235.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.177;QD=13.08;ReadPosRankSum=1.325;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010325.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326989    GT:AD:DP:GQ:PL    0/1:9,9:18:99:266,0,287
19    51329272    rs3212808    T    G    77.48    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.5;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301421    GT:AD:DP:GQ:PL    0/1:2,3:5:69.36:107,0,69
19    51330501    rs112098052    G    T    70.66    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.872;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.14;MQ0=0;MQRankSum=-3.366;QD=4.71;ReadPosRankSum=-3.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301421    GT:AD:DP:GQ:PL    0/1:7,8:15:99:101,0,231
19    51359497    rs11573    T    C    1754.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=G16;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51359496_51359655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326003    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1788,129,0
19    51359503    rs1135766    A    G    1860.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.63;MQ0=0;QD=29.53;SNPEFF_AMINO_ACID_CHANGE=A18;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51359496_51359655;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326003    GT:AD:DP:GQ:PL    1/1:0,63:63:99:1893,150,0
19    51359852    rs174776    T    C    84.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326003    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    51361315    rs12946    C    T    1350.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=34.62;SNPEFF_AMINO_ACID_CHANGE=S79;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51361285_51361571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326003    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1383,105,0
19    51361472    rs2003783    C    A    885.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_AMINO_ACID_CHANGE=L132I;SNPEFF_CODON_CHANGE=Ctc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51361285_51361571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326003    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:919,69,0
19    51361644    rs1810020    A    G    1549.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435152    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1583,120,0
19    51362716    rs66592214    T    C    393.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435152    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:426,33,0
19    51362803    rs35192866    C    T    1070.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=58.2;MQ0=0;QD=27.46;SNPEFF_AMINO_ACID_CHANGE=T216;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51362786_51364020;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360617    GT:AD:DP:GQ:PL    1/1:0,37:39:84.24:1104,84,0
19    51362955    rs45588133    G    A    450.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435152    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:484,36,0
19    51363398    rs1058205    C    T    2219.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435152    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2253,175,0
19    51379556    rs11549920    A    C    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325321    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,101
19    51379893    rs198972    C    T    618.95    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.889;DB;DP=48;Dels=0.0;FS=2.555;HRun=1;HaplotypeScore=1.8653;MQ=59.52;MQ0=0;MQRankSum=0.022;QD=12.89;ReadPosRankSum=-1.455;SNPEFF_AMINO_ACID_CHANGE=L124;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51379728_51380014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325321    GT:AD:DP:GQ:PL    0/1:23,25:48:99:649,0,565
19    51380110    rs6070    T    A    1715.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325321    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1748,132,0
19    51380445    rs8105275    G    T    179.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325321    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:212,15,0
19    51381777    rs198977    C    T    3889.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.79;MQ0=0;QD=35.04;SNPEFF_AMINO_ACID_CHANGE=R148W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51381660_51382046;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391810    GT:AD:DP:GQ:PL    1/1:0,110:111:99:3889,286,0
19    51410471    rs2235091    A    G    366.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324041    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:399,30,0
19    51411636    rs2569527    G    T    2515.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=H197Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51411615_51411751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324041    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2549,190,0
19    51413906    rs2978642    A    T    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.02;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324041    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
19    51447065    rs1701949    T    C    425.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336334    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:459,39,0
19    51452250    rs183854    T    C    2338.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=N153D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51452115_51452371;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336334    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2371,181,0
19    51452970    rs268900    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=8.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336334    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
19    51452978    rs3215405    CT    C    153.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=74.1581;IndelType=D;MQ=29.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336334    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
19    51455814    rs2739412    A    C    696.98    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=30.3;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336334    GT:AD:DP:GQ:PL    1/1:1,22:23:24.63:730,25,0
19    51456005    rs2659093    T    G    423.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.51;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_51456003_51456344;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336334    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:457,33,0
19    51456015    rs11553092    G    A    200.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.03;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_51456003_51456344;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336334    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:233,18,0
19    51465200    rs112376245    A    AC    549.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=6;HaplotypeScore=49.4725;IndelType=I;MQ=61.07;MQ0=0;QD=27.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424910    GT:AD:DP:GQ:PL    1/1:4,16:20:48.14:592,48,0
19    51466516    rs1654537    A    G    1652.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.83;MQ0=0;QD=30.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424910    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1686,129,0
19    51470381    rs188584931    C    G    254.27    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.355;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.76;QD=12.71;ReadPosRankSum=-0.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310157    GT:AD:DP:GQ:PL    0/1:11,9:20:99:284,0,366
19    51483620    rs35354640    G    C    388.26    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.135;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.489;QD=14.93;ReadPosRankSum=1.106;SNPEFF_AMINO_ACID_CHANGE=L115;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51483496_51483743;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304045    GT:AD:DP:GQ:PL    0/1:12,14:26:99:418,0,360
19    51484984    rs1991820    C    T    86.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304045    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    51484990    rs1991819    T    C    80.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304045    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
19    51485013    rs1991818    C    T    101.64    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.33;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304045    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:132,0,27
19    51485194    rs1654523    C    T    540.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304045    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:573,42,0
19    51485622    rs2659067    A    G    602.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51485583_51485713;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304045    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:635,48,0
19    51530693    rs1474520    G    A    1435.55    PASS    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=2.559;DB;DP=115;Dels=0.0;FS=6.057;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.863;QD=12.48;ReadPosRankSum=-0.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250351    GT:AD:DP:GQ:PL    0/1:64,51:115:99:1466,0,1716
19    51534020    rs75565227    C    T    1403.28    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.369;DB;DP=96;Dels=0.0;FS=0.794;HRun=0;HaplotypeScore=3.0818;MQ=58.84;MQ0=0;MQRankSum=0.416;QD=14.62;ReadPosRankSum=-1.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250351    GT:AD:DP:GQ:PL    0/1:46,50:96:99:1433,0,1273
19    51535130    rs3745540    A    G    1189.02    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=4.552;DB;DP=102;Dels=0.0;FS=2.635;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.262;QD=11.66;ReadPosRankSum=-0.423;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000319590    GT:AD:DP:GQ:PL    0/1:55,47:102:99:1219,0,1541
19    51538154    rs8104577    T    G    598.59    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.091;DB;DP=37;Dels=0.0;FS=7.014;HRun=0;HaplotypeScore=0.9973;MQ=58.11;MQ0=0;MQRankSum=1.251;QD=16.18;ReadPosRankSum=-0.193;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250351    GT:AD:DP:GQ:PL    0/1:15,22:37:99:629,0,412
19    51563188    rs35833234    G    A    870.82    PASS    AB=0.362;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.542;DB;DP=47;Dels=0.0;FS=4.93;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.565;QD=18.53;ReadPosRankSum=-2.314;SNPEFF_AMINO_ACID_CHANGE=V134;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51563082_51563350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000156476    GT:AD:DP:GQ:PL    0/1:17,30:47:99:901,0,553
19    51563965    rs2569474    G    A    716.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156476    GT:AD:DP:GQ:PL    1/1:0,19:20:57.16:749,57,0
19    51566943    rs2736433    G    A    86.21    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=17.24;ReadPosRankSum=0.731;SNPEFF_AMINO_ACID_CHANGE=G76;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51566843_51567118;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441527    GT:AD:DP:GQ:PL    0/1:1,4:5:24.94:116,0,25
19    51567176    rs2736431    G    A    99.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.55;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156476    GT:AD:DP:GQ:PL    0/1:2,4:6:57.62:129,0,58
19    51567990    rs10500306    T    C    129.87    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.653;QD=7.64;ReadPosRankSum=0.754;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_51567855_51568141;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376799    GT:AD:DP:GQ:PL    0/1:11,6:17:99:160,0,398
19    51568029    rs2736434    G    T    94.64    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.036;QD=9.46;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156476    GT:AD:DP:GQ:PL    0/1:6,4:10:99:125,0,210
19    51568066    rs12979090    A    G    90.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.55;QD=12.93;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLK13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000156476    GT:AD:DP:GQ:PL    0/1:3,4:7:99:121,0,104
19    51628529    rs2075803    A    G    2653    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=K100E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51628165_51628652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250360    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2686,208,0
19    51630482    rs2258983    C    A    1477.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.45;MQ0=0;QD=35.19;SNPEFF_AMINO_ACID_CHANGE=A315E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51630287_51630553;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000250360    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1511,111,0
19    51631363    rs273691    C    T    1276.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.83;MQ=59.41;MQ0=0;QD=32.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250360    GT:AD:DP:GQ:PL    1/1:0,38:39:99:1309,99,0
19    51633052    rs2569446    T    C    764.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000250360    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:798,60,0
19    51647519    rs273677    C    G    554.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=32.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305628    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:588,45,0
19    51656218    rs273661    G    C    1932.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9142;MQ=59.13;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305628    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1966,147,0
19    51656454    rs273662    A    T    2990.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=36.93;SNPEFF_AMINO_ACID_CHANGE=G359;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51656320_51656783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000305628    GT:AD:DP:GQ:PL    1/1:0,81:81:99:3024,229,0
19    51658469    .    C    T    187.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=20.8;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305628    GT:AD:DP:GQ:PL    0/1:3,6:9:93.37:217,0,93
19    51658831    rs273664    G    A    1865.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=33.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305628    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1899,138,0
19    51728193    rs2459141    T    C    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262262    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
19    51728641    rs2455069    A    G    1918.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=29.97;SNPEFF_AMINO_ACID_CHANGE=R69G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51728474_51728854;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262262    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1951,156,0
19    51835892    rs11410501    T    TG    1233.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=1;HaplotypeScore=91.3571;IndelType=I;MQ=60.36;MQ0=0;QD=41.12;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_51834790_51835894;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10L;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000335624    GT:AD:DP:GQ:PL    1/1:0,29:30:87.27:1276,87,0
19    51837171    rs7255306    A    G    483.74    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.406;DB;DP=52;Dels=0.0;FS=3.928;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.354;QD=9.3;ReadPosRankSum=-0.41;SNPEFF_AMINO_ACID_CHANGE=P816;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51837045_51837199;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335624    GT:AD:DP:GQ:PL    0/1:31,21:52:99:514,0,1039
19    51837213    rs7255412    A    G    369.79    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.949;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.632;MQ=59.52;MQ0=0;MQRankSum=-0.447;QD=7.7;ReadPosRankSum=-0.419;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLON5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270642    GT:AD:DP:GQ:PL    0/1:29,19:48:99:400,0,820
19    51837332    rs10418551    A    G    617.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLON5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270642    GT:AD:DP:GQ:PL    1/1:0,18:18:51.15:651,51,0
19    51837344    rs11672414    C    T    42.95    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.254;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.254;QD=3.3;ReadPosRankSum=-1.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLON5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270642    GT:AD:DP:GQ:PL    0/1:10,3:13:72.94:73,0,362
19    51841417    rs34380065    C    T    669.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=R592Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51841184_51841462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335624    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:703,51,0
19    51843162    rs12982441    G    A    52.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=49.96;MQ0=0;MQRankSum=-0.358;QD=10.47;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSIG10L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335624    GT:AD:DP:GQ:PL    0/1:2,3:5:44.10:82,0,44
19    51853400    rs4802788    G    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309244    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    51853468    rs4802789    C    T    175.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309244    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
19    51856604    rs111522316    C    T    281.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.867;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=0.4;QD=18.78;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309244    GT:AD:DP:GQ:PL    0/1:6,9:15:99:312,0,145
19    51856619    rs2004309    T    C    269.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.79;MQ0=1;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309244    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:302,24,0
19    51856631    rs3889312    G    A    118.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.25;MQ0=1;QD=23.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309244    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:151,12,0
19    51856641    rs3889313    G    C    69.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=44.84;MQ0=1;QD=17.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309244    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:101,9,0
19    51857738    rs79338777    G    A    428.23    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.314;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=-1.766;QD=11.9;ReadPosRankSum=-0.578;SNPEFF_AMINO_ACID_CHANGE=P52L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51857404_51858096;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354232    GT:AD:DP:GQ:PL    0/1:19,17:36:99:458,0,579
19    51858040    rs78611945    C    T    39.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309244    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:69,0,31
19    51874950    rs3009    G    A    911.63    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.616;DB;DP=80;Dels=0.0;FS=2.193;HRun=0;HaplotypeScore=0.9997;MQ=59.77;MQ0=0;MQRankSum=0.506;QD=11.4;ReadPosRankSum=0.336;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLDND2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291715    GT:AD:DP:GQ:PL    0/1:42,38:80:99:942,0,1081
19    51883727    rs2547318    G    A    2087.97    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.051;DB;DP=148;Dels=0.0;FS=1.366;HRun=0;HaplotypeScore=2.8819;MQ=59.38;MQ0=0;MQRankSum=0.744;QD=14.11;ReadPosRankSum=1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221973    GT:AD:DP:GQ:PL    0/1:72,76:148:99:2118,0,2014
19    51885470    rs34140285    C    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221973    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    51917206    rs60595035    A    C    81.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524527    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:111,0,30
19    51917735    rs1974821    G    A    316.19    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=21;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=0.0;MQ=56.84;MQ0=0;MQRankSum=0.38;QD=15.06;ReadPosRankSum=1.064;SNPEFF_AMINO_ACID_CHANGE=N307;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51917676_51917769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000442846    GT:AD:DP:GQ:PL    0/1:10,11:21:99:346,0,235
19    51918112    rs3810099    A    G    909.62    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.21;DB;DP=80;Dels=0.0;FS=4.447;HRun=0;HaplotypeScore=0.8941;MQ=55.37;MQ0=0;MQRankSum=-1.446;QD=11.37;ReadPosRankSum=-2.152;SNPEFF_AMINO_ACID_CHANGE=H469;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51918078_51918362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439889    GT:AD:DP:GQ:PL    0/1:44,36:80:99:940,0,1316
19    51918135    rs1833785    G    T    677.47    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.389;DB;DP=65;Dels=0.0;FS=11.596;HRun=0;HaplotypeScore=0.5784;MQ=54.88;MQ0=0;MQRankSum=-2.197;QD=10.42;ReadPosRankSum=0.495;SNPEFF_AMINO_ACID_CHANGE=R462S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51918078_51918362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439889    GT:AD:DP:GQ:PL    0/1:36,29:65:99:707,0,1148
19    51918360    rs61741672    A    G    512.24    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.972;DB;DP=40;Dels=0.0;FS=1.569;HRun=4;HaplotypeScore=1.6439;MQ=57.75;MQ0=0;MQRankSum=-2.268;QD=12.81;ReadPosRankSum=0.352;SNPEFF_AMINO_ACID_CHANGE=S387P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51918078_51918362;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439889    GT:AD:DP:GQ:PL    0/1:18,22:40:99:542,0,581
19    51918394    rs35546227    T    G    611.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.81;DB;DP=50;Dels=0.0;FS=1.134;HRun=3;HaplotypeScore=0.0;MQ=57.37;MQ0=0;MQRankSum=-0.37;QD=12.23;ReadPosRankSum=1.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524527    GT:AD:DP:GQ:PL    0/1:25,25:50:99:641,0,720
19    51918901    rs112905231    G    A    962.59    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=1.946;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=46.9;MQ0=4;MQRankSum=-7.22;QD=10.7;ReadPosRankSum=0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524527    GT:AD:DP:GQ:PL    0/1:49,41:90:99:993,0,1443
19    51919140    rs3810101    G    A    1345.85    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.137;DB;DP=101;Dels=0.0;FS=8.07;HRun=0;HaplotypeScore=1.7621;MQ=48.69;MQ0=0;MQRankSum=-6.369;QD=13.33;ReadPosRankSum=-1.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524527    GT:AD:DP:GQ:PL    0/1:45,56:101:99:1376,0,1226
19    51919321    rs61741671    T    C    404.32    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.777;DB;DP=34;Dels=0.0;FS=1.509;HRun=0;HaplotypeScore=0.0;MQ=57.58;MQ0=0;MQRankSum=-1.225;QD=11.89;ReadPosRankSum=1.846;SNPEFF_AMINO_ACID_CHANGE=T202;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51919152_51919421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000432469    GT:AD:DP:GQ:PL    0/1:16,18:34:99:434,0,444
19    51919507    rs62114257    T    C    2329.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.094;DB;DP=78;Dels=0.0;FS=5.898;HRun=4;HaplotypeScore=0.9998;MQ=57.9;MQ0=0;MQRankSum=-0.796;QD=29.87;ReadPosRankSum=1.639;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000524527    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2363,154,0
19    51919949    rs9304711    G    A    607.63    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=35;Dels=0.0;FS=1.703;HRun=0;HaplotypeScore=1.5592;MQ=51.92;MQ0=0;MQRankSum=2.622;QD=17.36;ReadPosRankSum=0.567;SNPEFF_AMINO_ACID_CHANGE=A168V;SNPEFF_CODON_CHANGE=gCa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51919920_51920030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439889    GT:AD:DP:GQ:PL    0/1:13,22:35:99:638,0,349
19    51919998    rs61741677    T    C    361.60    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=0.446;DB;DP=46;Dels=0.0;FS=3.067;HRun=0;HaplotypeScore=4.7131;MQ=56.2;MQ0=0;MQRankSum=-1.654;QD=7.86;ReadPosRankSum=0.341;SNPEFF_AMINO_ACID_CHANGE=N152D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51919920_51920030;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439889    GT:AD:DP:GQ:PL    0/1:31,15:46:99:392,0,831
19    51920240    rs112587079    G    T    884.07    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.975;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6006;MQ=59.95;MQ0=0;MQRankSum=-0.706;QD=13.6;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339313    GT:AD:DP:GQ:PL    0/1:34,31:65:99:914,0,1134
19    51920613    rs1010425    C    T    900.02    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=51;Dels=0.0;FS=2.545;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.22;QD=17.65;ReadPosRankSum=0.105;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC10;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000530476    GT:AD:DP:GQ:PL    0/1:21,30:51:99:930,0,639
19    51984725    rs8106673    T    A    1413.09    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.408;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-1.269;QD=12.51;ReadPosRankSum=0.693;SNPEFF_AMINO_ACID_CHANGE=L160H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51984647_51984919;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396477    GT:AD:DP:GQ:PL    0/1:60,53:113:99:1443,0,1823
19    51986317    .    C    T    1938.99    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.127;DP=148;Dels=0.0;FS=2.168;HRun=0;HaplotypeScore=3.4874;MQ=59.25;MQ0=0;MQRankSum=0.591;QD=13.1;ReadPosRankSum=1.959;SNPEFF_AMINO_ACID_CHANGE=N240;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_51986271_51986545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEACAM18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396477    GT:AD:DP:GQ:PL    0/1:81,67:148:99:1969,0,2429
19    52000187    rs61743142    C    T    1044.17    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=3.309;DB;DP=66;Dels=0.0;FS=2.061;HRun=0;HaplotypeScore=1.6647;MQ=57.56;MQ0=0;MQRankSum=1.059;QD=15.82;ReadPosRankSum=0.507;SNPEFF_AMINO_ACID_CHANGE=V516M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52000134_52000230;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:31,35:66:99:1074,0,878
19    52000624    rs3752135    T    G    2260.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.66;MQ0=0;QD=33.24;SNPEFF_AMINO_ACID_CHANGE=Y494S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52000603_52000699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2294,169,0
19    52000672    rs3829658    G    A    940.01    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=57;Dels=0.0;FS=10.086;HRun=0;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;MQRankSum=0.561;QD=16.49;ReadPosRankSum=-0.952;SNPEFF_AMINO_ACID_CHANGE=T478M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52000603_52000699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:23,34:57:99:970,0,708
19    52001485    rs11668530    G    A    378.68    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=35;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.018;QD=10.82;ReadPosRankSum=-0.601;SNPEFF_AMINO_ACID_CHANGE=H398Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52001272_52001541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:19,15:35:99:409,0,549
19    52002291    rs73051351    A    C    95.68    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.729;QD=10.63;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,184
19    52002317    rs4801871    G    C    297.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=21.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    1/1:0,14:14:30.07:330,30,0
19    52002488    rs968491    C    A    1601.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.864;MQ=58.48;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1634,120,0
19    52002493    rs59372820    T    A    635.13    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.374;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.806;QD=14.11;ReadPosRankSum=-0.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:22,23:45:99:665,0,674
19    52002729    rs2009362    G    A    372.59    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.476;DB;DP=30;Dels=0.0;FS=1.415;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.559;QD=12.42;ReadPosRankSum=0.52;SNPEFF_AMINO_ACID_CHANGE=G350;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52002692_52002970;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:16,14:30:99:403,0,462
19    52003058    rs10420446    C    T    333.89    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=17;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=0.8667;MQ=58.9;MQ0=0;MQRankSum=0.151;QD=19.64;ReadPosRankSum=1.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:6,11:17:99:364,0,174
19    52003089    rs10420457    C    T    412.29    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=1.873;QD=22.9;ReadPosRankSum=-1.873;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:5,13:18:99:442,0,135
19    52003331    rs6509544    G    C    2906.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9933;MQ=59.45;MQ0=0;QD=34.6;SNPEFF_AMINO_ACID_CHANGE=H217Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52003174_52003554;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2940,223,0
19    52003723    .    A    G    34.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.84;MQ0=0;MQRankSum=-0.421;QD=4.28;ReadPosRankSum=-2.017;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:4,4:8:64.27:64,0,111
19    52004469    rs3810108    C    T    255.31    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=49.85;MQ0=0;MQRankSum=0.599;QD=12.16;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:11,10:21:99:285,0,289
19    52004551    rs3810109    C    T    2005.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.12;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2039,153,0
19    52004743    rs3810110    G    A    1663.61    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=103;Dels=0.0;FS=3.985;HRun=1;HaplotypeScore=1.8928;MQ=60.53;MQ0=0;MQRankSum=-1.724;QD=16.15;ReadPosRankSum=-0.82;SNPEFF_AMINO_ACID_CHANGE=A82V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52004561_52005043;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:43,60:103:99:1694,0,1231
19    52004791    rs66949844    G    GC    2449.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=3;HaplotypeScore=386.4086;IndelType=I;MQ=61.04;MQ0=0;QD=35.0;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_52004561_52005043;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    1/1:2,68:70:99:2492,187,0
19    52004903    rs16982743    G    A    689.28    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.029;DB;DP=47;Dels=0.0;FS=14.62;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.191;QD=14.67;ReadPosRankSum=1.103;SNPEFF_AMINO_ACID_CHANGE=Q29*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_19_52004561_52005043;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000291707    GT:AD:DP:GQ:PL    0/1:21,25:47:99:719,0,604
19    52031162    rs897783    A    G    281.07    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.133;QD=20.08;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426829    GT:AD:DP:GQ:PL    0/1:5,9:14:99:311,0,166
19    52031304    rs2290660    C    A    289.72    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.464;DB;DP=16;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=18.11;ReadPosRankSum=-0.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426829    GT:AD:DP:GQ:PL    0/1:6,10:16:99:320,0,201
19    52032964    rs3976745    C    G    276.80    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.836;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.38;QD=13.84;ReadPosRankSum=-0.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426829    GT:AD:DP:GQ:PL    0/1:9,11:20:99:307,0,303
19    52033742    rs2305772    G    A    352.73    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.601;DB;DP=22;Dels=0.0;FS=1.719;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.534;QD=16.03;ReadPosRankSum=-0.735;SNPEFF_AMINO_ACID_CHANGE=P246S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52033691_52033771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359982    GT:AD:DP:GQ:PL    0/1:9,13:22:99:383,0,233
19    52034506    rs60467951    C    T    892.76    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=1.322;DB;DP=82;Dels=0.0;FS=0.849;HRun=0;HaplotypeScore=0.9979;MQ=59.44;MQ0=0;MQRankSum=-1.408;QD=10.89;ReadPosRankSum=0.562;SNPEFF_AMINO_ACID_CHANGE=R101Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52034414_52034773;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346477    GT:AD:DP:GQ:PL    0/1:48,34:82:99:923,0,1537
19    52085095    rs35431178    G    A    422.34    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=2.369;DB;DP=31;Dels=0.0;FS=1.529;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.199;QD=13.62;ReadPosRankSum=0.066;SNPEFF_AMINO_ACID_CHANGE=P85;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52085040_52085135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF175;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262259    GT:AD:DP:GQ:PL    0/1:14,17:31:99:452,0,349
19    52085291    rs1543923    T    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262259    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    52089724    rs4507016    G    A    248.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262259    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:281,21,0
19    52089806    rs10439118    T    C    92.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=7.7;ReadPosRankSum=0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262259    GT:AD:DP:GQ:PL    0/1:8,4:12:99:122,0,243
19    52090014    rs35625154    C    T    431.59    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.593;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.415;QD=14.88;ReadPosRankSum=-0.807;SNPEFF_AMINO_ACID_CHANGE=R144C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52089880_52092968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF175;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262259    GT:AD:DP:GQ:PL    0/1:15,14:29:99:462,0,469
19    52090100    rs45541134    T    C    474.91    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.301;QD=8.63;ReadPosRankSum=0.129;SNPEFF_AMINO_ACID_CHANGE=N172;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52089880_52092968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF175;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262259    GT:AD:DP:GQ:PL    0/1:33,22:55:99:505,0,1022
19    52097030    rs10412978    C    G    215.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262259    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
19    52097177    rs7253296    T    C    503.30    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.566;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.166;QD=15.25;ReadPosRankSum=0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF175;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262259    GT:AD:DP:GQ:PL    0/1:13,20:33:99:533,0,337
19    52097261    rs58301181    C    G    287.58    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=2.144;DB;DP=35;Dels=0.0;FS=1.533;HRun=1;HaplotypeScore=0.6651;MQ=59.34;MQ0=0;MQRankSum=0.27;QD=8.22;ReadPosRankSum=-0.991;SNPEFF_AMINO_ACID_CHANGE=R105P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52097202_52097633;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC018755.11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301439    GT:AD:DP:GQ:PL    0/1:22,13:35:99:318,0,519
19    52097560    .    G    GA    135.92    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.349;DP=35;FS=0.0;HRun=8;HaplotypeScore=82.4677;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=3.88;ReadPosRankSum=-0.02;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_52097202_52097633;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC018755.11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000301439    GT:AD:DP:GQ:PL    0/1:27,8:35:99:175,0,611
19    52101918    rs1868947    T    C    124.64    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.156;QD=6.56;ReadPosRankSum=-0.251;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC018755.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301439    GT:AD:DP:GQ:PL    0/1:11,8:19:99:155,0,369
19    52102232    rs142978762    TGA    T    410.20    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=21;FS=9.705;HRun=0;HaplotypeScore=65.8835;IndelType=D;MQ=60.51;MQ0=0;MQRankSum=-0.421;QD=19.53;ReadPosRankSum=-0.421;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC018755.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301439    GT:AD:DP:GQ:PL    0/1:9,12:21:99:449,0,258
19    52104489    rs8113451    C    G    533.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=28.06;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,19:19:42.12:566,42,0
19    52104560    rs3752127    T    C    329.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=25.36;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:13:33.07:363,33,0
19    52104713    rs3752126    G    C    182.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.62;MQ0=0;QD=26.1;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:216,18,0
19    52130337    rs8105105    T    C    87.58    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.361;QD=9.73;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222107    GT:AD:DP:GQ:PL    0/1:4,5:9:99:118,0,132
19    52208277    rs11382950    G    GC    3188.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;FS=0.0;HRun=1;HaplotypeScore=148.0901;IndelType=I;MQ=60.99;MQ0=0;QD=41.96;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:3,73:76:99:3231,220,0
19    52220077    rs11084110    C    T    69.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.94;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000222115    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,142
19    52223121    rs7248778    A    G    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.68;SNPEFF_AMINO_ACID_CHANGE=C13R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52222459_52223148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540069    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:81,6,0
19    52248990    rs1868943    A    G    36.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304748    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
19    52248999    rs867229    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304748    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
19    52249071    rs10540677    CT    C    38.46    QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.116;DB;DP=26;FS=0.0;HRun=14;HaplotypeScore=193.5468;IndelType=D;MQ=53.45;MQ0=0;MQRankSum=0.579;QD=1.48;ReadPosRankSum=0.039;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FPR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304748    GT:AD:DP:GQ:PL    0/1:17,6:26:77.49:77,0,259
19    52249211    rs867228    T    G    1588.21    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.891;DB;DP=108;Dels=0.0;FS=1.588;HRun=0;HaplotypeScore=1.9138;MQ=58.05;MQ0=0;MQRankSum=-0.363;QD=14.71;ReadPosRankSum=-1.161;SNPEFF_AMINO_ACID_CHANGE=E346A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52249027_52250258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FPR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304748    GT:AD:DP:GQ:PL    0/1:49,58:108:99:1618,0,1386
19    52249702    rs2070746    G    T    1740.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=34.82;SNPEFF_AMINO_ACID_CHANGE=P182;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52249027_52250258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FPR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304748    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1774,132,0
19    52249947    rs2070745    C    G    823.93    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=2.771;DB;DP=53;Dels=0.0;FS=3.844;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.208;QD=15.55;ReadPosRankSum=1.2;SNPEFF_AMINO_ACID_CHANGE=V101L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52249027_52250258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FPR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304748    GT:AD:DP:GQ:PL    0/1:22,31:53:99:854,0,657
19    52250216    rs5030878    A    G    807.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=35.13;SNPEFF_AMINO_ACID_CHANGE=I11T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52249027_52250258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FPR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304748    GT:AD:DP:GQ:PL    1/1:0,23:23:66.18:841,66,0
19    52403516    rs1549931    T    C    98.67    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.96;ReadPosRankSum=-0.729;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_52403346_52403547;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF649;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354957    GT:AD:DP:GQ:PL    0/1:4,5:9:99:129,0,143
19    52520714    rs12976476    G    T    297.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF614;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270649    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:331,27,0
19    52619065    rs3764537    T    C    1428.83    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.524;DB;DP=116;Dels=0.0;FS=1.5;HRun=0;HaplotypeScore=2.2413;MQ=59.8;MQ0=0;MQRankSum=-0.549;QD=12.32;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=H451R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52617654_52620277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF616;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330123    GT:AD:DP:GQ:PL    0/1:61,54:116:99:1459,0,1887
19    52620334    rs45468391    C    T    457.32    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.771;DB;DP=31;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.217;QD=14.75;ReadPosRankSum=1.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF616;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330123    GT:AD:DP:GQ:PL    0/1:16,15:31:99:487,0,544
19    52627349    rs8100114    C    T    907.62    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.255;DB;DP=64;Dels=0.0;FS=3.357;HRun=2;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=-0.255;QD=14.18;ReadPosRankSum=3.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF616;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330123    GT:AD:DP:GQ:PL    0/1:34,30:64:99:938,0,1127
19    52658510    rs8113504    T    C    2565.50    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.227;DB;DP=193;Dels=0.0;FS=7.192;HRun=0;HaplotypeScore=0.5784;MQ=59.64;MQ0=0;MQRankSum=0.407;QD=13.29;ReadPosRankSum=0.193;SNPEFF_AMINO_ACID_CHANGE=N809S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52658125_52660793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF836;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322146    GT:AD:DP:GQ:PL    0/1:104,89:193:99:2595,0,3191
19    52659991    rs1821278    A    G    1399.26    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=1.581;DB;DP=82;Dels=0.0;FS=0.85;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.97;QD=17.06;ReadPosRankSum=0.194;SNPEFF_AMINO_ACID_CHANGE=Y113;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52659960_52660329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF836;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396443    GT:AD:DP:GQ:PL    0/1:35,47:82:99:1429,0,1098
19    52660279    rs1366245    C    T    1800.73    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.886;DB;DP=138;Dels=0.0;FS=1.347;HRun=0;HaplotypeScore=8.3009;MQ=59.5;MQ0=0;MQRankSum=-0.501;QD=13.05;ReadPosRankSum=-0.345;SNPEFF_AMINO_ACID_CHANGE=M17I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52659960_52660329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF836;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396443    GT:AD:DP:GQ:PL    0/1:70,68:138:99:1831,0,2295
19    52660783    rs17696575    A    G    1566.34    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DB;DP=104;Dels=0.0;FS=0.891;HRun=2;HaplotypeScore=3.4653;MQ=58.93;MQ0=0;MQRankSum=1.048;QD=15.06;ReadPosRankSum=-0.532;SNPEFF_AMINO_ACID_CHANGE=P51;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52658125_52660793;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF836;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322146    GT:AD:DP:GQ:PL    0/1:52,52:104:99:1596,0,1575
19    52664019    rs3794976    A    G    104.66    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.44;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF836;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322146    GT:AD:DP:GQ:PL    0/1:2,4:6:62.49:135,0,62
19    52772768    rs2657930    T    C    290.96    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=26.45;ReadPosRankSum=-0.589;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF766;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439461    GT:AD:DP:GQ:PL    0/1:2,9:11:33.62:321,0,34
19    52803669    rs3217319    CTG    C    1348.84    PASS    AB=0.707;AC=1;AF=0.50;AN=2;BaseQRankSum=7.354;DB;DP=99;FS=3.362;HRun=0;HaplotypeScore=314.8647;IndelType=D;MQ=59.41;MQ0=0;MQRankSum=-0.671;QD=13.62;ReadPosRankSum=0.671;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_52803647_52803737;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF480;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334564    GT:AD:DP:GQ:PL    0/1:58,41:99:99:1388,0,2790
19    52817186    rs2657933    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF480;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334564    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    52852523    rs321953    T    C    2044.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321287    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2078,159,0
19    52856955    rs1961205    C    T    1293.49    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.28;QD=12.81;ReadPosRankSum=0.308;SNPEFF_AMINO_ACID_CHANGE=D28;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52856935_52857061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321287    GT:AD:DP:GQ:PL    0/1:59,41:101:99:1323,0,1810
19    52857399    rs2251559    G    A    721.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321287    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:755,57,0
19    52863545    rs2657939    G    A    200.31    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.14;QD=10.02;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321287    GT:AD:DP:GQ:PL    0/1:11,9:20:99:230,0,363
19    52868883    rs11881435    G    A    739.83    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.645;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-1.449;QD=17.21;ReadPosRankSum=1.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321287    GT:AD:DP:GQ:PL    0/1:20,23:43:99:770,0,641
19    52869022    rs2241586    G    T    4871.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1887;MQ=59.87;MQ0=0;QD=35.05;SNPEFF_AMINO_ACID_CHANGE=A131S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52868951_52870375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327920    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4872,361,0
19    52869278    rs321937    G    C    1429.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=R173P;SNPEFF_CODON_CHANGE=cGt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52868951_52870375;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321287    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1463,111,0
19    52869312    rs162120    T    C    1241.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=31.04;SNPEFF_AMINO_ACID_CHANGE=T184;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52868951_52870375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321287    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1275,99,0
19    52869534    rs162119    G    A    1236.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;DB;DP=39;Dels=0.0;FS=3.606;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.644;QD=31.7;ReadPosRankSum=0.666;SNPEFF_AMINO_ACID_CHANGE=S258;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52868951_52870375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF610;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321287    GT:AD:DP:GQ:PL    1/1:1,38:39:61.53:1269,62,0
19    52877464    rs35732198    A    AT    159.53    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=0.033;DB;DP=22;FS=0.0;HRun=14;HaplotypeScore=180.3433;IndelType=I;MQ=52.17;MQ0=0;MQRankSum=0.824;QD=7.25;ReadPosRankSum=0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF880;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344085    GT:AD:DP:GQ:PL    0/1:12,9:22:99:199,0,151
19    52887282    rs324125    A    G    105.20    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=9.56;ReadPosRankSum=0.278;SNPEFF_AMINO_ACID_CHANGE=Y150C;SNPEFF_CODON_CHANGE=tAt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52887102_52889048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF880;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422689    GT:AD:DP:GQ:PL    0/1:7,4:11:99:135,0,244
19    52888048    rs324124    G    A    848.71    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-0.827;QD=11.63;ReadPosRankSum=-0.367;SNPEFF_AMINO_ACID_CHANGE=E405;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52887102_52889048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF880;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422689    GT:AD:DP:GQ:PL    0/1:43,30:73:99:879,0,1332
19    52905067    rs324091    A    C    434.19    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.728;DB;DP=46;Dels=0.0;FS=2.724;HRun=0;HaplotypeScore=0.0;MQ=56.39;MQ0=0;MQRankSum=-0.228;QD=9.44;ReadPosRankSum=-0.182;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360465    GT:AD:DP:GQ:PL    0/1:29,17:46:99:464,0,884
19    52909303    rs2290745    C    T    2018.80    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.73;DB;DP=140;Dels=0.0;FS=0.657;HRun=1;HaplotypeScore=1.9861;MQ=59.84;MQ0=0;MQRankSum=0.557;QD=14.42;ReadPosRankSum=-0.941;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436397    GT:AD:DP:GQ:PL    0/1:59,81:140:99:2049,0,1843
19    52909458    rs2245620    T    G    143.60    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=17.95;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436397    GT:AD:DP:GQ:PL    0/1:3,5:8:97.60:174,0,98
19    52909989    rs11668956    A    G    288.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=14.41;ReadPosRankSum=0.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391787    GT:AD:DP:GQ:PL    0/1:10,10:20:99:318,0,344
19    52920006    rs10664588    C    CTG    521.37    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=46.3101;IndelType=I;MQ=58.55;MQ0=0;MQRankSum=0.326;QD=32.59;ReadPosRankSum=-0.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF528;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479718    GT:AD:DP:GQ:PL    0/1:5,11:16:99:560,0,127
19    52937530    rs2560997    C    T    609.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,17:17:48.14:642,48,0
19    52938131    rs2434459    G    C    202.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:235,18,0
19    52938205    rs11084159    T    G    1010.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=37.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1043,78,0
19    52938209    rs11084160    A    G    1048.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=37.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1081,81,0
19    52938361    rs11084161    C    A    3766.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=T57N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52938334_52938462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3766,289,0
19    52938417    rs11084162    A    G    3145.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=37.89;SNPEFF_AMINO_ACID_CHANGE=I76V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52938334_52938462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,83:83:99:3178,232,0
19    52938459    rs11084163    A    G    2303.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=T102A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52938334_52938462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391790    GT:AD:DP:GQ:PL    1/1:0,66:67:99:2337,178,0
19    52938648    rs10853848    C    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    52938655    rs10853849    G    A    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    52940845    rs1428178    A    G    198.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:232,18,0
19    52940931    rs1428179    A    T    1955.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.82;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1988,153,0
19    52941171    rs1428180    T    C    3505.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7886;MQ=59.81;MQ0=0;QD=28.97;SNPEFF_AMINO_ACID_CHANGE=F153S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52940985_52942699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433050    GT:AD:DP:GQ:PL    1/1:0,121:121:99:3506,292,0
19    52941540    rs1366257    G    A    2010.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=30.46;SNPEFF_AMINO_ACID_CHANGE=G276E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52940985_52942699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433050    GT:AD:DP:GQ:PL    1/1:0,65:66:99:2043,153,0
19    52941618    rs1366258    A    C    1684.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.53;MQ0=0;QD=34.38;SNPEFF_AMINO_ACID_CHANGE=E302A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52940985_52942699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433050    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1718,126,0
19    52941847    rs1366259    A    T    1504.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_AMINO_ACID_CHANGE=G378;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52940985_52942699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433050    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1538,120,0
19    52942159    rs2608497    A    G    2405.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0493;MQ=58.92;MQ0=0;MQRankSum=1.682;QD=34.36;ReadPosRankSum=-0.628;SNPEFF_AMINO_ACID_CHANGE=Q482;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52940985_52942699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433050    GT:AD:DP:GQ:PL    1/1:1,68:69:99:2438,181,0
19    52942445    rs2608498    C    T    3472.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.81;MQ0=0;MQRankSum=-1.555;QD=35.07;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=H578Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52940985_52942699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433050    GT:AD:DP:GQ:PL    1/1:1,98:99:99:3472,228,0
19    52942495    rs2561001    G    A    3337.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.0422;MQ=60.0;MQ0=0;MQRankSum=1.455;QD=33.38;ReadPosRankSum=0.935;SNPEFF_AMINO_ACID_CHANGE=A594;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52940985_52942699;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000433050    GT:AD:DP:GQ:PL    1/1:1,99:100:99:3338,214,0
19    52942734    rs2446079    C    T    937.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.36;MQ0=0;QD=34.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332323    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:971,75,0
19    52954507    rs324104    T    C    154.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.77;SNPEFF_AMINO_ACID_CHANGE=A113;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_52954440_52955568;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:187,15,0
19    52954937    rs324103    T    C    857.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,25:25:69.20:891,69,0
19    52959991    rs12459176    C    T    58.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF534;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301085    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:90,6,0
19    52961140    rs324092    G    T    1411.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=35.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC010506.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480028    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1444,108,0
19    53008137    rs113406199    T    TTTGTTTGA    867.51    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.386;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=278.083;IndelType=I;MQ=55.7;MQ0=0;MQRankSum=-0.02;QD=17.7;ReadPosRankSum=-2.819;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF578;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553364    GT:AD:DP:GQ:PL    0/1:34,13:46:99:907,0,1274
19    53014346    rs161931    G    A    2855.97    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.519;DB;DP=171;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7005;MQ=59.76;MQ0=0;MQRankSum=0.863;QD=16.7;ReadPosRankSum=1.584;SNPEFF_AMINO_ACID_CHANGE=E238K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53013825_53015407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF578;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553364    GT:AD:DP:GQ:PL    0/1:76,95:171:99:2886,0,2181
19    53015384    rs4802965    A    G    1638.07    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=94;Dels=0.0;FS=0.783;HRun=0;HaplotypeScore=0.0;MQ=59.26;MQ0=0;MQRankSum=-0.195;QD=17.43;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=I584V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53013825_53015407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF578;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000553364    GT:AD:DP:GQ:PL    0/1:40,54:94:99:1668,0,1348
19    53077411    rs162832    T    C    1643.67    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.021;DB;DP=113;Dels=0.0;FS=0.726;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.27;QD=14.55;ReadPosRankSum=0.27;SNPEFF_AMINO_ACID_CHANGE=L4P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53077330_53077415;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF701;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391785    GT:AD:DP:GQ:PL    0/1:50,63:113:99:1674,0,1527
19    53077582    rs111804380    G    C    296.72    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.693;QD=15.62;ReadPosRankSum=0.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF808;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478039    GT:AD:DP:GQ:PL    0/1:8,11:19:99:327,0,270
19    53085393    rs62117246    C    T    581.53    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.265;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=14.18;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF701;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301093    GT:AD:DP:GQ:PL    0/1:21,20:41:99:612,0,744
19    53085659    rs366793    C    T    2216.44    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.651;DB;DP=133;Dels=0.0;FS=0.651;HRun=0;HaplotypeScore=1.7753;MQ=59.83;MQ0=0;MQRankSum=0.511;QD=16.66;ReadPosRankSum=-0.607;SNPEFF_AMINO_ACID_CHANGE=T116I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53085455_53090427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF701;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391785    GT:AD:DP:GQ:PL    0/1:61,71:133:99:2246,0,2060
19    53086124    rs373554    C    A    1096.40    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=4.621;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.07;MQ0=0;MQRankSum=0.188;QD=16.87;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=T271K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53085455_53090427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF701;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391785    GT:AD:DP:GQ:PL    0/1:32,33:65:99:1126,0,929
19    53086485    rs62117247    T    C    773.54    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=99;Dels=0.0;FS=2.854;HRun=0;HaplotypeScore=1.2434;MQ=40.45;MQ0=4;MQRankSum=-3.908;QD=7.81;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=F391;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53085455_53090427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF701;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391785    GT:AD:DP:GQ:PL    0/1:59,40:99:99:804,0,1737
19    53086918    rs62117248    C    T    443.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.883;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.09;QD=13.05;ReadPosRankSum=-0.991;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF701;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301093    GT:AD:DP:GQ:PL    0/1:17,17:34:99:474,0,544
19    53086954    rs62117249    C    T    602.11    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=37;Dels=0.0;FS=2.908;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=-1.387;QD=16.27;ReadPosRankSum=1.63;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF701;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301093    GT:AD:DP:GQ:PL    0/1:17,20:37:99:632,0,546
19    53098934    rs10403603    T    C    2246.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.376;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=58.55;MQ0=0;MQRankSum=-0.968;QD=31.64;ReadPosRankSum=0.408;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456718    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2280,140,0
19    53099040    rs7247069    T    G    5012.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.706;DB;DP=142;Dels=0.0;FS=10.122;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.113;QD=35.3;ReadPosRankSum=-0.113;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456718    GT:AD:DP:GQ:PL    1/1:2,140:142:99:5012,309,0
19    53099069    rs11880939    A    G    5626.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=58.38;MQ0=0;QD=32.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456718    GT:AD:DP:GQ:PL    1/1:0,172:173:99:5627,445,0
19    53099100    rs11878446    T    C    6196.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=189;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.62;MQ0=0;QD=32.79;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456718    GT:AD:DP:GQ:PL    1/1:0,189:189:99:6196,475,0
19    53099297    rs2068068    G    T    3393.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.77;MQ0=0;QD=35.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,94:95:99:3394,250,0
19    53099308    rs2068067    A    G    3194.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.62;MQ0=0;QD=37.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,85:85:99:3227,238,0
19    53099409    rs2068066    T    C    1943.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1976,150,0
19    53099608    rs4801920    T    G    2007.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=34.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2040,153,0
19    53099637    rs4801921    A    G    1574.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=30.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1608,120,0
19    53099653    rs4801922    G    A    537.34    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.016;QD=10.97;ReadPosRankSum=0.954;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    0/1:30,19:49:99:567,0,869
19    53099686    rs35261656    A    AT    1738.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=1;HaplotypeScore=421.6685;IndelType=I;MQ=60.23;MQ0=0;QD=41.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1781,120,0
19    53099709    rs4802975    C    T    1522.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.97;MQ0=0;QD=35.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1555,114,0
19    53099758    rs4801923    G    A    1160.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=36.28;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1194,87,0
19    53099796    rs4802976    C    T    373.67    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.022;DB;DP=31;Dels=0.0;FS=1.536;HRun=0;HaplotypeScore=0.9999;MQ=58.64;MQ0=0;MQRankSum=-1.181;QD=12.05;ReadPosRankSum=1.101;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    0/1:18,13:31:99:404,0,499
19    53099965    rs2279151    A    G    1724.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1757,132,0
19    53099975    rs2279152    C    G    1870.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1904,150,0
19    53100323    rs7250630    A    G    1513.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.595;DB;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.7149;MQ=59.44;MQ0=0;MQRankSum=-0.398;QD=11.21;ReadPosRankSum=-1.012;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    0/1:75,60:135:99:1543,0,2454
19    53100377    rs7250969    G    A    1760.44    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=111;Dels=0.0;FS=1.549;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.476;QD=15.86;ReadPosRankSum=-0.367;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333303    GT:AD:DP:GQ:PL    0/1:57,54:111:99:1790,0,1704
19    53100585    rs1802617    G    T    3302.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.76;MQ0=0;QD=37.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ZNF137P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446680    GT:AD:DP:GQ:PL    1/1:0,89:89:99:3303,244,0
19    53116643    rs11545619    T    C    687.61    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.23;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.03;QD=14.03;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=H364R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53116267_53116929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF83;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391789    GT:AD:DP:GQ:PL    0/1:25,24:49:99:718,0,767
19    53117531    rs1056185    C    T    752.73    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.715;DB;DP=68;Dels=0.0;FS=3.403;HRun=1;HaplotypeScore=3.5606;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=11.07;ReadPosRankSum=2.162;SNPEFF_AMINO_ACID_CHANGE=S96N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53115620_53118050;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF83;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301096    GT:AD:DP:GQ:PL    0/1:44,24:68:99:783,0,1304
19    53117809    rs10406458    C    A    331.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.635;DB;DP=25;Dels=0.0;FS=9.432;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.137;QD=13.28;ReadPosRankSum=-1.082;SNPEFF_AMINO_ACID_CHANGE=G3;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53115620_53118050;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF83;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301096    GT:AD:DP:GQ:PL    0/1:10,15:25:99:362,0,349
19    53122002    rs35068187    T    C    299.11    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.386;QD=23.01;ReadPosRankSum=1.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022150.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456395    GT:AD:DP:GQ:PL    0/1:4,9:13:99:329,0,126
19    53122030    rs10402926    G    C    417.43    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.68;MQ0=0;MQRankSum=1.485;QD=19.88;ReadPosRankSum=0.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022150.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456395    GT:AD:DP:GQ:PL    0/1:8,13:21:99:447,0,258
19    53122472    rs35706759    T    G    711.02    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.245;DB;DP=65;Dels=0.0;FS=12.479;HRun=1;HaplotypeScore=0.7887;MQ=56.09;MQ0=0;MQRankSum=0.22;QD=10.94;ReadPosRankSum=-1.538;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022150.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456395    GT:AD:DP:GQ:PL    0/1:38,27:65:99:741,0,1198
19    53122511    rs10405302    T    G    486.68    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=37;Dels=0.0;FS=3.103;HRun=1;HaplotypeScore=0.9997;MQ=56.16;MQ0=0;MQRankSum=-1.234;QD=13.15;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022150.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456395    GT:AD:DP:GQ:PL    0/1:20,17:37:99:517,0,685
19    53122521    rs10403520    A    C    528    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=1.819;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=57.02;MQ0=0;MQRankSum=-0.234;QD=16.0;ReadPosRankSum=0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC022150.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456395    GT:AD:DP:GQ:PL    0/1:17,16:33:99:558,0,597
19    53207528    rs73063462    T    C    1380.81    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=1.949;DB;DP=90;Dels=0.0;FS=0.817;HRun=0;HaplotypeScore=1.9945;MQ=60.0;MQ0=0;MQRankSum=-0.165;QD=15.34;ReadPosRankSum=1.271;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF611;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319783    GT:AD:DP:GQ:PL    0/1:46,44:90:99:1411,0,1426
19    53209553    rs4085566    G    A    1156.33    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.38;DB;DP=155;Dels=0.0;FS=2.022;HRun=0;HaplotypeScore=0.0;MQ=56.07;MQ0=0;MQRankSum=1.542;QD=7.46;ReadPosRankSum=0.901;SNPEFF_AMINO_ACID_CHANGE=P183L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53206066_53210117;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF611;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453741    GT:AD:DP:GQ:PL    0/1:74,81:155:99:1186,0,2421
19    53209554    rs4085565    G    T    1150.09    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.52;DB;DP=157;Dels=0.0;FS=1.998;HRun=1;HaplotypeScore=0.0;MQ=56.12;MQ0=0;MQRankSum=0.926;QD=7.33;ReadPosRankSum=0.975;SNPEFF_AMINO_ACID_CHANGE=P183T;SNPEFF_CODON_CHANGE=Ccc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53206066_53210117;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF611;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453741    GT:AD:DP:GQ:PL    0/1:75,82:157:99:1180,0,2397
19    53217564    rs4405657    G    C    339.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF611;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319783    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:372,27,0
19    53270384    rs1820128    A    G    4245.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=47.59;MQ0=6;QD=30.54;SNPEFF_AMINO_ACID_CHANGE=C209R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53268747_53271025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF600;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338230    GT:AD:DP:GQ:PL    1/1:0,139:139:99:4246,349,0
19    53277711    rs35098902    C    CA    257.81    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.567;DB;DP=35;FS=0.0;HRun=15;HaplotypeScore=404.7288;IndelType=I;MQ=40.36;MQ0=0;MQRankSum=-1.953;QD=7.37;ReadPosRankSum=-1.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF600;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338230    GT:AD:DP:GQ:PL    1/1:17,14:35:21.58:300,22,0
19    53302737    rs10410012    T    C    1074.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339844    GT:AD:DP:GQ:PL    1/1:0,32:32:87.26:1108,87,0
19    53302899    rs9917046    G    C    3319.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.384;DB;DP=101;Dels=0.0;FS=10.9;HRun=0;HaplotypeScore=1.81;MQ=57.71;MQ0=0;MQRankSum=1.855;QD=32.86;ReadPosRankSum=-1.119;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339844    GT:AD:DP:GQ:PL    1/1:5,96:101:85.05:3319,85,0
19    53302942    rs9917044    C    T    2999.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=*666;SNPEFF_CODON_CHANGE=tGa/tAa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_19_53301176_53304955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360272    GT:AD:DP:GQ:PL    1/1:1,89:90:99:3032,235,0
19    53303527    rs8107444    A    G    2288.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_AMINO_ACID_CHANGE=M471T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53301176_53304955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360272    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2321,181,0
19    53303705    rs10417163    T    G    2901.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=35.38;SNPEFF_AMINO_ACID_CHANGE=K412Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53301176_53304955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360272    GT:AD:DP:GQ:PL    1/1:1,81:82:99:2934,223,0
19    53311395    rs7257656    G    A    5212.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.3823;MQ=51.09;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339844    GT:AD:DP:GQ:PL    1/1:0,170:170:99:5212,418,0
19    53384185    rs6509701    C    T    2090.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9243;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_AMINO_ACID_CHANGE=A398;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53379425_53385236;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:0,56:56:99:2124,159,0
19    53391402    rs145680166    A    G    464.60    MQFilter40;QDFilter2    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=0.878;DB;DP=243;Dels=0.0;FS=2.146;HRun=0;HaplotypeScore=0.0;MQ=22.95;MQ0=124;MQRankSum=0.228;QD=1.91;ReadPosRankSum=-0.312;SNPEFF_AMINO_ACID_CHANGE=N40;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53391380_53391506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    0/1:195,48:243:99:495,0,2403
19    53391486    rs141803277    A    G    892.77    MQFilter40    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=0.08;DB;DP=175;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=14.16;MQ0=125;MQRankSum=-1.034;QD=5.1;ReadPosRankSum=-0.284;SNPEFF_AMINO_ACID_CHANGE=D12;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53391380_53391506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    0/1:121,54:175:99:923,0,249
19    53391500    rs150173048    G    A    1005.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=12.63;MQ0=114;QD=6.62;SNPEFF_AMINO_ACID_CHANGE=L8;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53391380_53391506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:101,50:152:99:1039,105,0
19    53391513    rs138627198    G    T    685.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.77;MQ0=104;QD=5.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:99,31:130:75.05:719,75,0
19    53391529    .    G    C    242.68    MQFilter40    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.873;DP=117;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=8.62;MQ0=99;MQRankSum=-0.296;QD=2.07;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    0/1:101,16:117:69.23:273,0,69
19    53391603    .    C    T    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.64;MQ0=79;QD=0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:77,5:83:6.02:67,6,0
19    53391606    .    A    T    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=4.75;MQ0=77;QD=0.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:76,4:80:6.02:67,6,0
19    53391615    .    C    T    68.27    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.58;MQ0=81;QD=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:80,5:85:9.02:100,9,0
19    53391625    rs28439546    A    G    68.27    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.32;MQ0=86;QD=0.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:85,4:89:9.02:100,9,0
19    53391661    rs28368887    T    C    66.38    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.21;MQ0=90;QD=0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:89,3:93:9.02:98,9,0
19    53391662    rs28522099    G    C    66.38    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.24;MQ0=89;QD=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:88,4:92:9.02:98,9,0
19    53391674    .    T    C    63.48    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.39;MQ0=84;QD=0.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF320;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391781    GT:AD:DP:GQ:PL    1/1:84,3:87:9.02:96,9,0
19    53409976    rs55809029    T    C    1022.90    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.441;DB;DP=95;Dels=0.0;FS=0.804;HRun=0;HaplotypeScore=1.9559;MQ=49.19;MQ0=0;MQRankSum=3.011;QD=10.77;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:55,40:95:99:1053,0,1500
19    53418555    rs13345639    A    G    290.22    MQFilter40;QDFilter2    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.348;DB;DP=232;DS;Dels=0.0;FS=59.317;HRun=0;HaplotypeScore=0.0;MQ=32.14;MQ0=56;MQRankSum=-4.881;QD=1.25;ReadPosRankSum=1.699;SNPEFF_AMINO_ACID_CHANGE=D12;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53418450_53418575;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010487.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454258    GT:AD:DP:GQ:PL    0/1:167,65:232:99:320,0,3918
19    53418598    rs4803022    C    G    649.11    MQFilter40    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=1.476;DB;DP=190;DS;Dels=0.0;FS=13.983;HRun=0;HaplotypeScore=1.7608;MQ=34.4;MQ0=39;MQRankSum=-1.234;QD=3.42;ReadPosRankSum=-1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454258    GT:AD:DP:GQ:PL    0/1:138,52:190:99:679,0,3099
19    53418611    rs13345654    A    G    740.01    HaplotypeScoreFilter13;MQFilter40    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=0.039;DB;DP=168;DS;Dels=0.0;FS=8.099;HRun=1;HaplotypeScore=40.4357;MQ=37.59;MQ0=25;MQRankSum=-4.612;QD=4.4;ReadPosRankSum=1.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454258    GT:AD:DP:GQ:PL    0/1:118,50:168:99:770,0,2926
19    53418618    rs10406306    A    T    843.51    HaplotypeScoreFilter13;MQFilter40    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=4.581;DB;DP=172;DS;Dels=0.0;FS=3.062;HRun=1;HaplotypeScore=40.105;MQ=38.89;MQ0=21;MQRankSum=-2.361;QD=4.9;ReadPosRankSum=-0.274;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454258    GT:AD:DP:GQ:PL    0/1:118,54:172:99:874,0,3098
19    53418645    .    A    G    1010.35    MQFilter40    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.879;DP=145;Dels=0.0;FS=11.822;HRun=1;HaplotypeScore=2.4722;MQ=39.85;MQ0=10;MQRankSum=-4.679;QD=6.97;ReadPosRankSum=2.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454258    GT:AD:DP:GQ:PL    0/1:97,48:145:99:1040,0,2915
19    53418693    rs7248528    C    T    601.37    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=5.652;DB;DP=74;Dels=0.0;FS=5.338;HRun=0;HaplotypeScore=0.0;MQ=40.55;MQ0=2;MQRankSum=-1.316;QD=8.13;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454258    GT:AD:DP:GQ:PL    0/1:50,24:74:99:631,0,1316
19    53418706    rs7248531    C    T    283.66    MQFilter40    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=1.685;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.55;MQ0=2;MQRankSum=-0.486;QD=5.35;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC010487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454258    GT:AD:DP:GQ:PL    0/1:37,16:53:99:314,0,1025
19    53572494    rs11665677    G    T    1285.84    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.42;DB;DP=104;Dels=0.0;FS=6.341;HRun=3;HaplotypeScore=1.7886;MQ=59.82;MQ0=0;MQRankSum=-1.402;QD=12.36;ReadPosRankSum=0.064;SNPEFF_AMINO_ACID_CHANGE=G431;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53569867_53573515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF160;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418871    GT:AD:DP:GQ:PL    0/1:58,46:104:99:1316,0,1892
19    53572887    rs61732582    T    C    957.90    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=0.42;DB;DP=73;Dels=0.0;FS=0.896;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;MQRankSum=-0.742;QD=13.12;ReadPosRankSum=-0.834;SNPEFF_AMINO_ACID_CHANGE=L300;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53569867_53573515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF160;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418871    GT:AD:DP:GQ:PL    0/1:37,36:73:99:988,0,1197
19    53572917    rs10407463    G    A    1055.99    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.621;DB;DP=76;Dels=0.0;FS=1.894;HRun=0;HaplotypeScore=1.367;MQ=59.09;MQ0=0;MQRankSum=-1.112;QD=13.89;ReadPosRankSum=-0.696;SNPEFF_AMINO_ACID_CHANGE=C290;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53569867_53573515;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF160;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000418871    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1086,0,1004
19    53576465    rs329734    C    G    290.09    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.059;QD=18.13;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418871    GT:AD:DP:GQ:PL    0/1:7,9:16:99:320,0,225
19    53577214    rs10412805    T    G    65.01    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.302;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.283;QD=3.82;ReadPosRankSum=0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355147    GT:AD:DP:GQ:PL    0/1:13,4:17:95:95,0,458
19    53577419    rs8105668    G    C    1046.97    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=0.131;DB;DP=77;Dels=0.0;FS=8.364;HRun=2;HaplotypeScore=1.841;MQ=59.7;MQ0=0;MQRankSum=2.849;QD=13.6;ReadPosRankSum=0.833;SNPEFF_AMINO_ACID_CHANGE=P82R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53577393_53577521;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF160;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355147    GT:AD:DP:GQ:PL    0/1:32,45:77:99:1077,0,812
19    53589677    rs329718    C    T    270.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=30.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF160;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355147    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:304,24,0
19    53612055    rs10410030    T    C    793.10    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.496;DB;DP=71;Dels=0.0;FS=6.52;HRun=0;HaplotypeScore=0.9989;MQ=59.68;MQ0=0;MQRankSum=-1.432;QD=11.17;ReadPosRankSum=-1.845;SNPEFF_AMINO_ACID_CHANGE=N402D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53611133_53613161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF415;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440291    GT:AD:DP:GQ:PL    0/1:38,32:71:99:823,0,1233
19    53612311    rs4803051    T    C    455.98    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.452;DB;DP=37;Dels=0.0;FS=4.646;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.933;QD=12.32;ReadPosRankSum=-0.269;SNPEFF_AMINO_ACID_CHANGE=T316;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53611133_53613161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF415;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440291    GT:AD:DP:GQ:PL    0/1:18,19:37:99:486,0,634
19    53612745    rs1133327    T    C    973.56    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.216;DB;DP=55;Dels=0.0;FS=3.798;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=17.7;ReadPosRankSum=-1.032;SNPEFF_AMINO_ACID_CHANGE=I172V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53611133_53613161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF415;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440291    GT:AD:DP:GQ:PL    0/1:23,32:55:99:1004,0,653
19    53612757    rs1054485    T    G    964.68    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.879;DB;DP=54;Dels=0.0;FS=3.855;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.113;QD=17.86;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=I168L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53611133_53613161;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF415;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440291    GT:AD:DP:GQ:PL    0/1:24,30:54:99:995,0,725
19    53619391    rs3745180    A    C    416.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF415;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243643    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:450,36,0
19    53619465    rs3745181    C    T    483.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;MQRankSum=-0.343;QD=14.65;ReadPosRankSum=-0.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF415;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243643    GT:AD:DP:GQ:PL    0/1:18,15:33:99:514,0,623
19    53625645    rs34974523    C    T    37.96    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.65;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF415;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243643    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:68,0,33
19    53645291    rs2195310    T    C    3992.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DB;DP=115;Dels=0.0;FS=3.502;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.371;QD=34.72;ReadPosRankSum=-0.588;SNPEFF_AMINO_ACID_CHANGE=N264D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53641958_53645809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF347;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334197    GT:AD:DP:GQ:PL    1/1:1,114:115:99:3992,257,0
19    53651845    rs10694633    T    TTC    4997.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;FS=0.0;HRun=0;HaplotypeScore=209.028;IndelType=I;MQ=59.96;MQ0=0;QD=56.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF347;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334197    GT:AD:DP:GQ:PL    1/1:3,85:89:99:4998,262,0
19    53652813    rs4801957    C    A    200.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF347;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334197    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
19    53667637    rs4803054    C    T    532.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.31;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:565,45,0
19    53667804    rs4801958    C    T    3551.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=V647I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53666552_53669600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3551,262,0
19    53667913    rs12459469    A    G    4232.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=36.18;SNPEFF_AMINO_ACID_CHANGE=N610;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53666552_53669600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,117:117:99:4233,313,0
19    53667940    rs12459471    A    G    3821.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.79;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=N601;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53666552_53669600;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3822,295,0
19    53669273    rs4801959    T    C    5524.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=34.75;SNPEFF_AMINO_ACID_CHANGE=H157R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53666552_53669600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5525,421,0
19    53669492    rs12460170    A    G    7906.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=222;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=59.58;MQ0=0;QD=35.61;SNPEFF_AMINO_ACID_CHANGE=V84A;SNPEFF_CODON_CHANGE=gTa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53666552_53669600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,222:222:99:7906,578,0
19    53669653    rs12460233    C    T    3073.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=59.78;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,84:84:99:3107,229,0
19    53678924    rs4289099    C    A    1461.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=39.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1495,111,0
19    53679045    rs8111924    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF665;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396424    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
19    53727591    rs10401984    T    C    2114.94    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.401;DB;DP=160;Dels=0.0;FS=4.885;HRun=1;HaplotypeScore=0.9159;MQ=49.47;MQ0=8;MQRankSum=-6.726;QD=13.22;ReadPosRankSum=-0.233;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF677;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333952    GT:AD:DP:GQ:PL    0/1:70,90:160:99:2145,0,2227
19    53727989    rs10408128    T    C    576.79    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=2.091;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.51;MQ0=0;MQRankSum=-1.927;QD=13.11;ReadPosRankSum=-0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF677;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333952    GT:AD:DP:GQ:PL    0/1:23,21:44:99:607,0,755
19    53740822    rs8113436    T    C    336.78    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.25;DB;DP=34;Dels=0.0;FS=5.449;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.615;QD=9.91;ReadPosRankSum=0.258;SNPEFF_AMINO_ACID_CHANGE=E386;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53737630_53741810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF677;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333952    GT:AD:DP:GQ:PL    0/1:19,14:34:99:367,0,574
19    53741068    rs12984188    C    T    734.33    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.11;DB;DP=52;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=58.66;MQ0=0;MQRankSum=0.659;QD=14.12;ReadPosRankSum=-1.502;SNPEFF_AMINO_ACID_CHANGE=S304;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53737630_53741810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF677;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333952    GT:AD:DP:GQ:PL    0/1:27,25:52:99:764,0,824
19    53741188    rs12984473    C    T    913.07    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.102;QD=17.23;ReadPosRankSum=-0.046;SNPEFF_AMINO_ACID_CHANGE=K264;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53737630_53741810;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF677;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333952    GT:AD:DP:GQ:PL    0/1:23,30:53:99:943,0,717
19    53746800    rs3097251    C    T    36.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.24;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF677;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333952    GT:AD:DP:GQ:PL    0/1:3,2:5:66.19:66,0,111
19    53754736    rs2965240    T    C    771.76    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.702;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.28;MQ0=0;MQRankSum=0.727;QD=13.31;ReadPosRankSum=0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF677;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333952    GT:AD:DP:GQ:PL    0/1:30,28:58:99:802,0,937
19    53760758    rs17305059    T    G    304.65    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.245;DB;DP=25;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.115;QD=12.19;ReadPosRankSum=-0.462;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VN1R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341702    GT:AD:DP:GQ:PL    0/1:13,12:25:99:335,0,389
19    53762537    rs12609049    C    T    1190.47    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=2.191;DB;DP=89;Dels=0.0;FS=0.82;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.038;QD=13.38;ReadPosRankSum=-0.105;SNPEFF_AMINO_ACID_CHANGE=L303;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53761545_53762855;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VN1R2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341702    GT:AD:DP:GQ:PL    0/1:49,40:89:99:1220,0,1500
19    53770569    rs115785997    G    C    447.26    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=51;Dels=0.0;FS=8.827;HRun=3;HaplotypeScore=1.9156;MQ=43.79;MQ0=2;MQRankSum=-1.323;QD=8.77;ReadPosRankSum=0.492;SNPEFF_AMINO_ACID_CHANGE=A117G;SNPEFF_CODON_CHANGE=gCa/gGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53769929_53770972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VN1R4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311170    GT:AD:DP:GQ:PL    0/1:32,19:51:99:477,0,1023
19    53784611    rs150209424    G    T    106.85    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.23;MQ0=0;MQRankSum=0.55;QD=15.26;ReadPosRankSum=0.937;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:3,4:7:91.06:137,0,91
19    53784647    rs11084232    G    A    143.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=15.93;ReadPosRankSum=1.159;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:4,5:9:99:173,0,113
19    53784704    rs55943466    G    A    260.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.107;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=54.82;MQ0=0;MQRankSum=-0.178;QD=12.39;ReadPosRankSum=-1.03;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:9,12:21:99:290,0,292
19    53784709    rs57846138    C    T    295.53    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=55.06;MQ0=0;MQRankSum=0.824;QD=13.43;ReadPosRankSum=-0.429;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:10,12:22:99:326,0,344
19    53784788    rs28669322    G    A    871.58    PASS    AB=0.47;AC=1;AF=0.50;AN=2;BaseQRankSum=3.837;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7525;MQ=51.49;MQ0=0;MQRankSum=0.085;QD=13.01;ReadPosRankSum=1.058;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:31,35:66:99:902,0,840
19    53784899    rs75521956    C    T    1342.28    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=4.468;DB;DP=95;Dels=0.0;FS=1.959;HRun=0;HaplotypeScore=0.8321;MQ=41.65;MQ0=10;MQRankSum=1.84;QD=14.13;ReadPosRankSum=0.327;SNPEFF_AMINO_ACID_CHANGE=T31M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53784808_53784930;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:46,49:95:99:1372,0,869
19    53784977    rs8112980    T    C    593.22    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.664;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=24.87;MQ0=27;MQRankSum=-0.227;QD=8.47;ReadPosRankSum=0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:42,28:70:99:623,0,508
19    53786255    rs8102543    G    T    480.20    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=59.42;MQ0=0;MQRankSum=-0.417;QD=15.01;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:14,18:32:99:510,0,399
19    53786258    rs8102246    A    T    436.58    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.391;QD=15.59;ReadPosRankSum=0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:13,15:28:99:467,0,338
19    53786347    rs111656848    T    C    63.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.406;QD=9.07;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:3,3:7:93.52:94,0,101
19    53787375    rs113804227    C    T    394.88    MQFilter40    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.468;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.69;MQ0=2;MQRankSum=0.0;QD=10.67;ReadPosRankSum=0.139;SNPEFF_AMINO_ACID_CHANGE=N186;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53787253_53788200;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:20,17:37:99:425,0,529
19    53788046    rs34943875    T    C    67.23    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.032;DB;DP=26;Dels=0.0;FS=5.746;HRun=0;HaplotypeScore=1.5317;MQ=45.91;MQ0=2;MQRankSum=-3.493;QD=2.59;ReadPosRankSum=-0.127;SNPEFF_AMINO_ACID_CHANGE=M410T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53787253_53788200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:17,9:26:97.23:97,0,574
19    53792794    rs8106055    G    C    418.50    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=3.488;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9581;MQ=58.71;MQ0=0;MQRankSum=0.503;QD=11.62;ReadPosRankSum=0.698;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC092070.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338885    GT:AD:DP:GQ:PL    0/1:22,14:36:99:448,0,734
19    53793042    rs8109165    G    A    1741.67    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=102;Dels=0.0;FS=4.732;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.158;QD=17.08;ReadPosRankSum=-1.089;SNPEFF_AMINO_ACID_CHANGE=H196Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53792856_53794875;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426466    GT:AD:DP:GQ:PL    0/1:48,54:102:99:1772,0,1615
19    53793574    rs2865248    A    G    682.29    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.014;DB;DP=57;Dels=0.0;FS=2.33;HRun=0;HaplotypeScore=1.6208;MQ=59.6;MQ0=0;MQRankSum=0.154;QD=11.97;ReadPosRankSum=0.606;SNPEFF_AMINO_ACID_CHANGE=V18;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53792856_53794875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426466    GT:AD:DP:GQ:PL    0/1:33,24:57:99:712,0,1008
19    53802337    rs1965725    A    C    89.97    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.334;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.49;MQ0=2;MQRankSum=-3.926;QD=2.73;ReadPosRankSum=-1.645;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,10:33:99:120,0,736
19    53802342    rs1965724    G    A    111.68    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.371;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.56;MQ0=2;MQRankSum=-3.926;QD=3.38;ReadPosRankSum=-1.539;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,9:33:99:142,0,719
19    53804160    rs58993507    T    C    246.27    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.84;DB;DP=24;Dels=0.0;FS=1.685;HRun=2;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=-0.088;QD=10.26;ReadPosRankSum=-1.552;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,10:24:99:276,0,437
19    53805193    .    C    T    164.33    MQFilter40    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.841;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.58;MQ0=17;MQRankSum=-2.888;QD=3.5;ReadPosRankSum=-1.297;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:33,14:47:99:194,0,525
19    53818436    rs7256991    C    A    707.93    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=0.04;DB;DP=41;Dels=0.0;FS=1.193;HRun=1;HaplotypeScore=0.9789;MQ=49.25;MQ0=0;MQRankSum=-1.707;QD=17.27;ReadPosRankSum=0.251;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=VN1R6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458417    GT:AD:DP:GQ:PL    0/1:17,24:41:99:738,0,486
19    53818473    rs7257010    C    T    505.40    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.16;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=50.37;MQ0=0;MQRankSum=0.0;QD=12.96;ReadPosRankSum=-0.263;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=VN1R6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458417    GT:AD:DP:GQ:PL    0/1:20,19:39:99:535,0,625
19    53818502    rs2865265    A    G    391.67    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.271;DB;DP=42;Dels=0.0;FS=5.092;HRun=0;HaplotypeScore=0.0;MQ=47.94;MQ0=2;MQRankSum=-2.271;QD=9.33;ReadPosRankSum=-1.094;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=VN1R6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458417    GT:AD:DP:GQ:PL    0/1:23,19:42:99:422,0,731
19    53818564    rs73055190    C    T    381.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.409;DB;DP=42;Dels=0.0;FS=2.987;HRun=0;HaplotypeScore=0.0;MQ=41.33;MQ0=4;MQRankSum=4.081;QD=9.08;ReadPosRankSum=-0.763;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=VN1R6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458417    GT:AD:DP:GQ:PL    0/1:24,18:42:99:411,0,499
19    53818603    rs10439122    G    A    340.55    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.22;DB;DP=33;Dels=0.0;FS=1.44;HRun=0;HaplotypeScore=0.0;MQ=42.41;MQ0=2;MQRankSum=2.982;QD=10.02;ReadPosRankSum=-0.981;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=VN1R6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458417    GT:AD:DP:GQ:PL    0/1:19,14:33:99:371,0,469
19    53819233    rs11878380    T    C    161.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.205;DB;DP=12;Dels=0.0;FS=12.175;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.467;QD=13.47;ReadPosRankSum=-0.259;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unitary_pseudogene;SNPEFF_GENE_NAME=VN1R6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458417    GT:AD:DP:GQ:PL    0/1:6,6:12:99:192,0,199
19    53878924    .    G    A    294.31    PASS    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.484;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.53;MQ0=1;MQRankSum=-4.339;QD=2.43;ReadPosRankSum=-0.878;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF525;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467003    GT:AD:DP:GQ:PL    0/1:99,21:120:99:324,0,3281
19    53878980    .    A    T    567.77    MQFilter40    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.871;DP=192;Dels=0.0;FS=4.693;HRun=0;HaplotypeScore=5.1574;MQ=34.28;MQ0=42;MQRankSum=-2.395;QD=2.96;ReadPosRankSum=0.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF525;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467003    GT:AD:DP:GQ:PL    0/1:146,46:192:99:598,0,3332
19    53901154    rs62117275    A    G    266.09    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.033;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=40.62;MQ0=1;MQRankSum=-2.011;QD=10.64;ReadPosRankSum=1.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    0/1:12,13:25:99:296,0,292
19    53905129    rs111753331    TA    T    870    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.0;HRun=14;HaplotypeScore=259.0308;IndelType=D;MQ=57.55;MQ0=0;QD=15.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    1/1:11,45:58:99:912,135,0
19    53905469    rs3975046    A    G    1186.59    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.27;DB;DP=121;DS;Dels=0.0;FS=13.408;HRun=4;HaplotypeScore=2.6998;MQ=43.3;MQ0=0;MQRankSum=0.433;QD=9.81;ReadPosRankSum=-1.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    0/1:66,55:121:99:1217,0,2103
19    53910678    rs3859491    G    A    34.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
19    53910742    rs3859492    A    C    121.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.93;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
19    53910769    rs3859493    T    C    156.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.12;MQ0=0;QD=31.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
19    53910912    rs2061773    G    A    2175.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;QD=35.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2209,168,0
19    53911510    rs8182488    G    A    2753.57    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.552;DB;DP=169;Dels=0.0;FS=2.709;HRun=1;HaplotypeScore=2.7336;MQ=59.62;MQ0=0;MQRankSum=0.273;QD=16.29;ReadPosRankSum=1.323;SNPEFF_AMINO_ACID_CHANGE=Q234;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53910951_53915260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396408    GT:AD:DP:GQ:PL    0/1:83,86:169:99:2784,0,2765
19    53911973    rs10425136    A    G    4610.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.83;MQ0=0;QD=34.41;SNPEFF_AMINO_ACID_CHANGE=S389G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53910951_53915260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396408    GT:AD:DP:GQ:PL    1/1:0,134:134:99:4610,343,0
19    53912242    rs10426347    G    A    2992.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8663;MQ=59.75;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=T478;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53910951_53915260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396408    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3025,223,0
19    53912521    rs73059151    G    A    306.09    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=28;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.343;QD=10.93;ReadPosRankSum=1.502;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    0/1:17,10:28:99:336,0,512
19    53912548    rs7246019    T    C    896.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.14;MQ0=0;QD=33.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF765;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340310    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:930,75,0
19    53945320    rs112282734    C    T    80.03    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9924;MQ=27.52;MQ0=5;MQRankSum=0.365;QD=5.34;ReadPosRankSum=0.633;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2224J9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424846    GT:AD:DP:GQ:PL    0/1:10,5:15:99:110,0,155
19    53945618    rs4803127    A    C    1431.04    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=4.232;DB;DP=108;Dels=0.0;FS=0.718;HRun=0;HaplotypeScore=0.0;MQ=53.64;MQ0=0;MQRankSum=-0.327;QD=13.25;ReadPosRankSum=-0.196;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2224J9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424846    GT:AD:DP:GQ:PL    0/1:57,51:108:99:1461,0,1724
19    53945837    rs17855120    T    C    431.87    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=2.354;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=45.23;MQ0=8;MQRankSum=-5.534;QD=5.76;ReadPosRankSum=0.248;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2224J9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424846    GT:AD:DP:GQ:PL    0/1:46,29:75:99:462,0,1505
19    53945998    rs73595288    T    C    578.43    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=4.744;DB;DP=47;Dels=0.0;FS=3.948;HRun=3;HaplotypeScore=0.8321;MQ=56.65;MQ0=0;MQRankSum=0.444;QD=12.31;ReadPosRankSum=0.785;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2224J9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492121    GT:AD:DP:GQ:PL    0/1:26,21:47:99:608,0,690
19    53952885    rs142219092    TC    T    1649.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=4;HaplotypeScore=199.0487;IndelType=D;MQ=24.93;MQ0=1;QD=24.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2224J9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424846    GT:AD:DP:GQ:PL    1/1:6,61:51:99:1691,141,0
19    53952921    rs7247440    A    G    375.09    MQFilter40    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=0.586;DB;DP=58;Dels=0.0;FS=3.025;HRun=3;HaplotypeScore=0.0;MQ=28.9;MQ0=2;MQRankSum=-2.894;QD=6.47;ReadPosRankSum=0.789;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CTD-2224J9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424846    GT:AD:DP:GQ:PL    0/1:33,25:58:99:405,0,827
19    53958126    rs2708743    T    G    2304.61    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=152;Dels=0.0;FS=3.893;HRun=0;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=-0.553;QD=15.16;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF761;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366293    GT:AD:DP:GQ:PL    0/1:74,78:152:99:2335,0,2377
19    53958263    rs1984432    G    A    2702.54    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.571;DB;DP=179;Dels=0.0;FS=0.551;HRun=0;HaplotypeScore=2.3249;MQ=59.55;MQ0=0;MQRankSum=1.439;QD=15.1;ReadPosRankSum=-0.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF761;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366293    GT:AD:DP:GQ:PL    0/1:93,86:179:99:2733,0,3067
19    53959343    rs2708742    G    A    1281.96    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=3.869;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.058;QD=12.82;ReadPosRankSum=0.223;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF761;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334095    GT:AD:DP:GQ:PL    0/1:58,42:100:99:1312,0,1673
19    53959568    rs2617726    G    C    1786.35    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.601;DB;DP=123;Dels=0.0;FS=3.324;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-1.454;QD=14.52;ReadPosRankSum=0.681;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF761;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334095    GT:AD:DP:GQ:PL    0/1:61,62:123:99:1816,0,1872
19    53983048    rs2617686    A    G    3287.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.933;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.1557;MQ=55.51;MQ0=0;MQRankSum=0.799;QD=31.31;ReadPosRankSum=-1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    1/1:1,103:105:99:3288,229,0
19    53989728    rs2617676    A    G    1001.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=50.46;MQ0=0;QD=27.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    1/1:0,37:37:93.18:1035,93,0
19    53989975    rs2708793    C    T    920.50    MQFilter40    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=1.887;DB;DP=235;DS;Dels=0.0;FS=13.342;HRun=0;HaplotypeScore=1.7653;MQ=21.94;MQ0=88;MQRankSum=0.584;QD=3.92;ReadPosRankSum=-0.635;SNPEFF_AMINO_ACID_CHANGE=D35;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53989886_53990012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    0/1:161,74:235:99:950,0,2199
19    53990002    rs12974996    G    A    1456.35    MQFilter40    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.062;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9505;MQ=27.34;MQ0=64;MQRankSum=1.817;QD=5.83;ReadPosRankSum=1.57;SNPEFF_AMINO_ACID_CHANGE=L44;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53989886_53990012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    0/1:181,69:250:99:1486,0,2519
19    53990041    .    G    A    116.88    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.535;DP=225;DS;Dels=0.0;FS=5.472;HRun=1;HaplotypeScore=25.6783;MQ=29.09;MQ0=57;MQRankSum=-2.871;QD=0.52;ReadPosRankSum=2.105;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    0/1:181,44:225:99:147,0,3594
19    53990044    rs73597388    G    A    663.76    HaplotypeScoreFilter13;MQFilter40    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.235;DB;DP=211;DS;Dels=0.0;FS=1.776;HRun=0;HaplotypeScore=23.6803;MQ=29.33;MQ0=52;MQRankSum=2.398;QD=3.15;ReadPosRankSum=-0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    0/1:161,50:211:99:694,0,2736
19    53990190    rs12974854    A    G    190.15    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.49;MQ0=1;MQRankSum=0.409;QD=7.92;ReadPosRankSum=-0.787;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    0/1:14,10:24:99:220,0,491
19    53993551    rs35938241    T    TTG    2403.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=0;HaplotypeScore=118.0257;IndelType=I;MQ=61.92;MQ0=0;QD=48.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    1/1:2,47:50:99:2446,150,0
19    53993670    rs2617667    G    A    2198.16    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.313;DB;DP=147;Dels=0.0;FS=4.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;MQRankSum=-0.257;QD=14.95;ReadPosRankSum=-0.691;SNPEFF_AMINO_ACID_CHANGE=A62T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53993629_53999509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    0/1:64,83:147:99:2228,0,1971
19    53995004    rs2708845    G    A    3387.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.882;DB;DP=108;Dels=0.0;FS=4.191;HRun=4;HaplotypeScore=2.65;MQ=59.79;MQ0=0;MQRankSum=0.752;QD=31.36;ReadPosRankSum=0.817;SNPEFF_AMINO_ACID_CHANGE=R506;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_53993629_53999509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396403    GT:AD:DP:GQ:PL    1/1:1,107:108:99:3387,238,0
19    54007145    rs72487103    G    A    194.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.34;MQ0=0;QD=27.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF813;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396421    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:228,18,0
19    54106547    rs1541925    G    A    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
19    54106756    rs13344462    C    T    113.72    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=2.808;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.64;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,5:9:99:144,0,107
19    54106763    rs13344463    C    T    117.40    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=2.808;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=13.04;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,5:9:99:147,0,102
19    54169697    rs28455744    G    T    75.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.89;MQ0=4;QD=9.46;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR512-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384913    GT:AD:DP:GQ:PL    1/1:0,8:8:9.02:108,9,0
19    54175037    rs4803160    G    A    448.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR512-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384912    GT:AD:DP:GQ:PL    1/1:0,13:13:39.08:481,39,0
19    54177273    rs7258128    T    C    309.08    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.815;QD=17.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1323;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408090    GT:AD:DP:GQ:PL    0/1:7,11:18:99:339,0,238
19    54179250    rs10409916    A    G    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1323;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408090    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    54188219    rs2060230    G    A    2305.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=53.06;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR519E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385075    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2339,175,0
19    54203263    .    A    G    1719.81    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.119;DP=148;Dels=0.0;FS=4.057;HRun=1;HaplotypeScore=0.5784;MQ=59.84;MQ0=0;MQRankSum=-1.39;QD=11.62;ReadPosRankSum=-0.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR519B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385090    GT:AD:DP:GQ:PL    0/1:82,66:148:99:1750,0,2564
19    54211903    rs7256241    T    G    439.33    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=2.053;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.356;QD=17.57;ReadPosRankSum=1.834;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR520C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385005    GT:AD:DP:GQ:PL    0/1:11,14:25:99:469,0,359
19    54216436    rs2865854    A    T    60.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=5.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR517A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385001    GT:AD:DP:GQ:PL    0/1:6,4:11:90.34:90,0,218
19    54223120    rs2011304    G    A    74.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=10.67;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR521-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384818    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,116
19    54223164    rs2217653    C    T    322.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.992;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.375;QD=13.42;ReadPosRankSum=-1.992;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR521-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384818    GT:AD:DP:GQ:PL    0/1:12,12:24:99:352,0,434
19    54224191    rs12973211    A    G    47.94    QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.209;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5975;MQ=57.57;MQ0=0;MQRankSum=-0.688;QD=1.65;ReadPosRankSum=1.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR520D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385002    GT:AD:DP:GQ:PL    0/1:14,14:29:77.93:78,0,367
19    54224285    rs67078176    CA    C    839.71    PASS    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=6.763;DB;DP=106;FS=0.916;HRun=8;HaplotypeScore=303.2107;IndelType=D;MQ=60.02;MQ0=0;MQRankSum=0.508;QD=7.85;ReadPosRankSum=0.601;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR520D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385002    GT:AD:DP:GQ:PL    0/1:64,43:106:99:879,0,1636
19    54225616    rs10426037    T    A    54.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=6.0;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR517B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385102    GT:AD:DP:GQ:PL    0/1:5,4:9:84.02:84,0,183
19    54240219    rs141076796    G    A    798.55    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3823;MQ=60.0;MQ0=0;MQRankSum=0.085;QD=12.88;ReadPosRankSum=0.185;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR516B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385211    GT:AD:DP:GQ:PL    0/1:35,27:62:99:829,0,1203
19    54251738    rs305930    C    T    146.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.763;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.515;QD=8.16;ReadPosRankSum=-0.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000516382    GT:AD:DP:GQ:PL    0/1:12,6:18:99:177,0,430
19    54255878    rs72385066    GTTT    G    165.99    PASS    AB=0.697;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=23;FS=0.0;HRun=14;HaplotypeScore=105.7165;IndelType=D;MQ=53.88;MQ0=0;MQRankSum=-1.309;QD=7.22;ReadPosRankSum=-1.461;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR519A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385257    GT:AD:DP:GQ:PL    0/1:13,5:23:60.35:205,0,60
19    54257114    rs3859499    T    C    700.21    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=3.264;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.758;QD=18.92;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR519A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385257    GT:AD:DP:GQ:PL    0/1:15,22:37:99:730,0,505
19    54257185    rs611356    C    G    1444.41    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.162;DB;DP=100;Dels=0.0;FS=2.944;HRun=3;HaplotypeScore=1.9996;MQ=54.02;MQ0=0;MQRankSum=-3.208;QD=14.44;ReadPosRankSum=0.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR519A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385257    GT:AD:DP:GQ:PL    0/1:45,55:100:99:1474,0,1438
19    54261644    rs3901466    C    T    382.22    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=4.433;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.39;MQ0=0;MQRankSum=-3.644;QD=13.65;ReadPosRankSum=1.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1283-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408621    GT:AD:DP:GQ:PL    0/1:12,16:28:99:412,0,303
19    54261669    rs683060    G    T    195.35    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=43.55;MQ0=0;MQRankSum=-3.241;QD=13.02;ReadPosRankSum=-1.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1283-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408621    GT:AD:DP:GQ:PL    0/1:6,9:15:99:225,0,207
19    54265779    rs67433648    GT    G    143.24    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=20;FS=0.0;HRun=9;HaplotypeScore=91.6181;IndelType=D;MQ=58.22;MQ0=0;MQRankSum=0.0;QD=7.16;ReadPosRankSum=0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1283-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408621    GT:AD:DP:GQ:PL    0/1:12,8:20:99:182,0,191
19    54265823    rs626698    C    T    111.33    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=12.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR1283-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408621    GT:AD:DP:GQ:PL    0/1:4,5:9:99:141,0,113
19    54291289    rs28461391    C    T    98.06    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7313;MQ=60.0;MQ0=0;MQRankSum=-0.929;QD=7.54;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR371;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362161    GT:AD:DP:GQ:PL    0/1:8,5:13:99:128,0,278
19    54291363    rs76038528    G    C    33.13    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=8.28;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR371;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362161    GT:AD:DP:GQ:PL    0/1:1,3:4:30.29:63,0,30
19    54291411    rs3859501    A    C    41.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR371;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362161    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
19    54297538    rs6509817    A    G    171.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
19    54298907    rs2042293    T    C    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
19    54298920    rs2042294    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    54298975    rs2042295    C    G    136.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=27.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:170,15,0
19    54299014    rs2042296    C    T    158.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:192,15,0
19    54304735    rs67215917    C    T    40.43    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.572;QD=5.05;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    0/1:6,2:8:69.51:70,0,70
19    54307322    rs12460528    G    A    322.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.989;DB;DP=30;Dels=0.0;FS=9.416;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.598;QD=10.76;ReadPosRankSum=-0.465;SNPEFF_AMINO_ACID_CHANGE=L106;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54307206_54307376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358661    GT:AD:DP:GQ:PL    0/1:18,12:30:99:353,0,493
19    54308554    rs4806773    C    T    3165.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.76;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=Q798;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54308534_54308704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3198,235,0
19    54308775    rs34166148    C    CT    68.46    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=149.4;IndelType=I;MQ=54.29;MQ0=0;MQRankSum=-0.573;QD=3.42;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    0/1:13,6:20:31.10:107,0,31
19    54310961    rs2866112    G    C    609.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.03;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:642,48,0
19    54311090    rs11084300    C    T    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.55;MQ0=0;QD=26.61;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_54310749_54311959;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358661    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    54313707    rs34971363    G    C    1767.70    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=3.756;DB;DP=155;Dels=0.0;FS=1.405;HRun=1;HaplotypeScore=5.4056;MQ=59.41;MQ0=0;MQRankSum=-0.127;QD=11.33;ReadPosRankSum=0.049;SNPEFF_AMINO_ACID_CHANGE=F402L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54312841_54314542;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    0/1:89,66:155:99:1798,0,2317
19    54314585    rs6509827    G    A    1118.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    1/1:0,33:34:90.26:1151,90,0
19    54318322    rs77330585    A    G    400.93    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;MQRankSum=1.734;QD=28.64;ReadPosRankSum=-2.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324134    GT:AD:DP:GQ:PL    0/1:2,12:14:39.10:431,0,39
19    54327440    rs4539722    G    A    347.45    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.137;DB;DP=25;Dels=0.0;FS=1.685;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.029;QD=13.9;ReadPosRankSum=0.732;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473605    GT:AD:DP:GQ:PL    0/1:10,15:25:99:377,0,278
19    54327568    rs4419163    A    T    120.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=20.12;ReadPosRankSum=-0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473605    GT:AD:DP:GQ:PL    0/1:2,4:6:65.40:151,0,65
19    54385437    rs307942    A    C    76.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=25.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474397    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
19    54385820    rs2547362    C    T    2488.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.63;SNPEFF_AMINO_ACID_CHANGE=A24;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54385467_54385918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKCG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263431    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2521,190,0
19    54387313    rs307956    A    T    379.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263431    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:413,30,0
19    54394965    rs3745406    T    C    2639.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4498;MQ=59.73;MQ0=0;QD=31.42;SNPEFF_AMINO_ACID_CHANGE=N189;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54394928_54395084;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKCG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263431    GT:AD:DP:GQ:PL    1/1:0,83:84:99:2672,211,0
19    54395098    rs3745405    G    T    897.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419486    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:931,69,0
19    54401602    rs41311973    G    C    330.61    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.099;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.073;QD=23.62;ReadPosRankSum=-1.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263431    GT:AD:DP:GQ:PL    0/1:2,12:14:46.29:361,0,46
19    54406170    rs151209852    ACG    A    156.87    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=37;FS=0.0;HRun=0;HaplotypeScore=509.3676;IndelType=D;MQ=38.1;MQ0=0;MQRankSum=-3.15;QD=4.24;ReadPosRankSum=0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536044    GT:AD:DP:GQ:PL    0/1:27,8:37:99:196,0,373
19    54406176    .    C    A    256.05    HaplotypeScoreFilter13;MQFilter40    AB=0.297;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.074;DP=37;Dels=0.03;FS=0.0;HRun=6;HaplotypeScore=33.4383;MQ=38.84;MQ0=0;MQRankSum=-4.211;QD=6.74;ReadPosRankSum=4.424;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRKCG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536044    GT:AD:DP:GQ:PL    0/1:11,26:37:99:286,0,303
19    54445594    rs77533775    AG    A    762.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=6;HaplotypeScore=74.0072;IndelType=D;MQ=60.37;MQ0=0;QD=26.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391766    GT:AD:DP:GQ:PL    1/1:4,25:29:75.19:805,75,0
19    54483118    rs138928125    C    T    243.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.747;DB;DP=22;Dels=0.0;FS=4.32;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.228;QD=11.09;ReadPosRankSum=0.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270458    GT:AD:DP:GQ:PL    0/1:12,9:22:99:274,0,315
19    54544189    rs2303558    C    T    65.88    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.962;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=3.88;ReadPosRankSum=1.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000366170    GT:AD:DP:GQ:PL    0/1:13,4:17:95.87:96,0,470
19    54545186    rs73058793    C    T    526.32    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.744;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.901;QD=11.7;ReadPosRankSum=-1.089;SNPEFF_AMINO_ACID_CHANGE=P148;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54545170_54545207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376626    GT:AD:DP:GQ:PL    0/1:28,17:45:99:556,0,906
19    54545274    rs67563163    G    T    594.04    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.99;DB;DP=50;Dels=0.0;FS=1.199;HRun=0;HaplotypeScore=2.576;MQ=58.6;MQ0=0;MQRankSum=-2.118;QD=11.88;ReadPosRankSum=-0.841;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338372    GT:AD:DP:GQ:PL    0/1:26,24:50:99:624,0,810
19    54545390    rs34610948    A    AC    1476.22    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.659;DB;DP=84;FS=2.879;HRun=0;HaplotypeScore=214.0312;IndelType=I;MQ=60.11;MQ0=0;MQRankSum=-1.251;QD=17.57;ReadPosRankSum=0.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338372    GT:AD:DP:GQ:PL    0/1:47,37:84:99:1515,0,1669
19    54545531    rs2433724    T    C    482.08    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.116;DB;DP=39;Dels=0.0;FS=6.227;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.941;QD=12.36;ReadPosRankSum=0.351;SNPEFF_AMINO_ACID_CHANGE=S163G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54545531_54545623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338372    GT:AD:DP:GQ:PL    0/1:20,19:39:99:512,0,703
19    54561385    rs11673528    T    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338372    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:73,0,31
19    54561792    rs11669427    G    A    975.69    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=1.45;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=0.505;QD=17.12;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=A41;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54561560_54561844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338372    GT:AD:DP:GQ:PL    0/1:26,31:57:99:1006,0,810
19    54562177    rs10419975    T    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338372    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
19    54566901    rs662850    C    T    1222.02    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.392;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=15.28;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VSTM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338372    GT:AD:DP:GQ:PL    0/1:38,42:80:99:1252,0,1145
19    54590248    .    A    G    106.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=17.77;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:63.23:137,0,63
19    54590257    .    A    G    140.82    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=20.12;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,5:7:63.40:171,0,63
19    54600232    rs1657535    A    C    1550.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4942;MQ=60.0;MQ0=0;MQRankSum=-0.604;QD=35.24;ReadPosRankSum=0.685;SNPEFF_AMINO_ACID_CHANGE=I101S;SNPEFF_CODON_CHANGE=aTt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54600149_54600451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCAR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356532    GT:AD:DP:GQ:PL    1/1:1,43:44:99:1583,120,0
19    54603173    rs661676    A    G    35.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.91;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSCAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284648    GT:AD:DP:GQ:PL    0/1:4,2:6:65.46:65,0,134
19    54604194    rs3760698    G    C    142.55    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;MQRankSum=0.135;QD=11.88;ReadPosRankSum=-0.689;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303553    GT:AD:DP:GQ:PL    0/1:7,5:12:99:173,0,222
19    54606209    rs254260    T    G    80.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391757    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
19    54609170    rs254256    A    G    492.79    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.676;DB;DP=48;Dels=0.0;FS=2.068;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.249;QD=10.27;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391757    GT:AD:DP:GQ:PL    0/1:27,21:48:99:523,0,879
19    54609178    rs254255    C    G    738.72    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.197;DB;DP=53;Dels=0.0;FS=4.55;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.827;QD=13.94;ReadPosRankSum=0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFPT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391757    GT:AD:DP:GQ:PL    0/1:27,26:53:99:769,0,885
19    54611287    rs621147    G    A    197.40    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=17;Dels=0.0;FS=3.282;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.4;QD=11.61;ReadPosRankSum=-1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303553    GT:AD:DP:GQ:PL    0/1:8,9:17:99:227,0,140
19    54611560    rs254263    C    G    68.18    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.74;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303553    GT:AD:DP:GQ:PL    0/1:4,3:7:98.17:98,0,117
19    54611734    rs75622830    A    G    405.57    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=29;Dels=0.0;FS=3.637;HRun=0;HaplotypeScore=0.7887;MQ=59.2;MQ0=0;MQRankSum=1.942;QD=13.99;ReadPosRankSum=-0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NDUFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303553    GT:AD:DP:GQ:PL    0/1:15,14:29:99:436,0,529
19    54627039    rs35291886    GCACA    G    274.34    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=99.3465;IndelType=D;MQ=55.02;MQ0=0;MQRankSum=-0.555;QD=16.14;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467851    GT:AD:DP:GQ:PL    0/1:10,7:17:99:313,0,421
19    54627097    rs2303557    T    C    464    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467851    GT:AD:DP:GQ:PL    1/1:0,13:13:39.11:497,39,0
19    54627915    rs11556769    C    T    513.48    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=2.61;DB;DP=42;Dels=0.0;FS=7.847;HRun=0;HaplotypeScore=0.7887;MQ=58.78;MQ0=0;MQRankSum=-1.25;QD=12.23;ReadPosRankSum=-0.554;SNPEFF_AMINO_ACID_CHANGE=P245;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54627878_54628035;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263436    GT:AD:DP:GQ:PL    0/1:23,19:42:99:543,0,501
19    54628075    rs76781318    G    A    164.11    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.091;DB;DP=18;Dels=0.0;FS=1.958;HRun=0;HaplotypeScore=1.367;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=9.12;ReadPosRankSum=-0.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445124    GT:AD:DP:GQ:PL    0/1:11,7:18:99:194,0,343
19    54631378    rs171703    T    C    37.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445124    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:68,6,0
19    54631381    rs45513391    G    A    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445124    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
19    54632423    rs655240    T    C    75.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445124    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:107,9,0
19    54634830    rs62144168    C    T    492.77    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.306;DB;DP=30;Dels=0.0;FS=1.744;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.598;QD=16.43;ReadPosRankSum=-0.376;SNPEFF_AMINO_ACID_CHANGE=S353L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54634769_54634867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF31;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263436    GT:AD:DP:GQ:PL    0/1:13,17:30:99:523,0,376
19    54647078    rs34281370    T    TGG    149.45    PASS    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=0.087;DB;DP=35;FS=5.184;HRun=8;HaplotypeScore=153.7622;IndelType=I;MQ=58.32;MQ0=0;MQRankSum=-1.662;QD=4.27;ReadPosRankSum=-0.379;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221232    GT:AD:DP:GQ:PL    0/1:27,8:35:99:188,0,617
19    54649671    rs36665    T    C    833.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=27.79;SNPEFF_AMINO_ACID_CHANGE=P243;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54649646_54649779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221232    GT:AD:DP:GQ:PL    1/1:0,30:30:72.21:867,72,0
19    54652203    rs43211    T    C    159.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.94;SNPEFF_AMINO_ACID_CHANGE=G224;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54651883_54652270;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358389    GT:AD:DP:GQ:PL    1/1:0,8:8:15.03:192,15,0
19    54652618    rs36662    C    A    102.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=25.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221232    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:135,12,0
19    54652621    rs2289147    G    A    64.86    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;MQRankSum=0.727;QD=16.22;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221232    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:95,0,21
19    54653572    rs36661    C    T    66.58    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.32;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221232    GT:AD:DP:GQ:PL    0/1:2,3:5:70.60:97,0,71
19    54657069    rs42318    C    T    817.84    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=59.45;MQ0=0;MQRankSum=-1.285;QD=16.36;ReadPosRankSum=0.876;SNPEFF_AMINO_ACID_CHANGE=S549L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54656918_54657130;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358389    GT:AD:DP:GQ:PL    0/1:23,27:50:99:848,0,708
19    54663896    rs76978325    A    AG    217.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=11.3704;IndelType=I;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNOT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221232    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:259,18,0
19    54664209    rs36657    G    C    968.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.24;SNPEFF_AMINO_ACID_CHANGE=Q271E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54664204_54664282;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416963    GT:AD:DP:GQ:PL    1/1:0,31:31:75.23:1002,75,0
19    54664752    rs36656    A    C    1034.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=32.33;SNPEFF_AMINO_ACID_CHANGE=L200;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54664615_54664770;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416963    GT:AD:DP:GQ:PL    1/1:0,32:32:81.26:1068,81,0
19    54665970    rs36655    C    T    161.21    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=14;Dels=0.0;FS=3.256;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.225;QD=11.51;ReadPosRankSum=0.715;SNPEFF_AMINO_ACID_CHANGE=Q106;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54665838_54666021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMC4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416963    GT:AD:DP:GQ:PL    0/1:6,8:14:99:191,0,201
19    54666357    rs2289146    C    G    337.69    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.55;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.92;MQ0=0;MQRankSum=-0.56;QD=14.68;ReadPosRankSum=-0.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476013    GT:AD:DP:GQ:PL    0/1:10,13:23:99:368,0,176
19    54676433    rs2576452    C    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245615    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
19    54676763    rs641738    C    T    463.45    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.862;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.1925;MQ=55.78;MQ0=0;MQRankSum=-1.574;QD=4.83;ReadPosRankSum=0.745;SNPEFF_AMINO_ACID_CHANGE=G17E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54676734_54676865;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=TMC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301187    GT:AD:DP:GQ:PL    0/1:60,36:96:99:493,0,1689
19    54676814    rs34564463    G    GC    698.17    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=67;FS=0.0;HRun=3;HaplotypeScore=253.1964;IndelType=I;MQ=58.78;MQ0=0;MQRankSum=-1.949;QD=10.42;ReadPosRankSum=-1.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245615    GT:AD:DP:GQ:PL    0/1:44,23:67:99:737,0,1249
19    54677759    rs4806721    T    C    703.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=39.09;SNPEFF_AMINO_ACID_CHANGE=P393;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54677107_54678125;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000338624    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:737,54,0
19    54687334    rs254283    C    G    377.90    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.966;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.029;QD=15.12;ReadPosRankSum=0.205;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474910    GT:AD:DP:GQ:PL    0/1:11,14:25:99:408,0,326
19    54691979    rs36626    G    C    974.97    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=2.135;DB;DP=85;Dels=0.0;FS=2.493;HRun=0;HaplotypeScore=1.8939;MQ=58.08;MQ0=0;MQRankSum=0.816;QD=11.47;ReadPosRankSum=0.152;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MBOAT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245615    GT:AD:DP:GQ:PL    0/1:46,39:85:99:1005,0,1433
19    54697079    rs7595    C    T    1060.36    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=1.938;DB;DP=76;Dels=0.0;FS=3.03;HRun=0;HaplotypeScore=0.8941;MQ=58.53;MQ0=0;MQRankSum=0.719;QD=13.95;ReadPosRankSum=-0.969;SNPEFF_AMINO_ACID_CHANGE=P265;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54697030_54697521;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSEN34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302937    GT:AD:DP:GQ:PL    0/1:35,41:76:99:1090,0,1011
19    54705182    rs2304525    G    C    198.68    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.532;DB;DP=20;Dels=0.0;FS=6.767;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=1.216;QD=9.93;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302907    GT:AD:DP:GQ:PL    0/1:11,9:20:99:229,0,352
19    54705207    rs36615    G    A    588.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302907    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:622,48,0
19    54705619    rs36614    A    G    80.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302907    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
19    54724794    .    C    T    85.91    MQFilter40    AC=2;AF=1.00;AN=2;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.76;MQ0=11;QD=5.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445347    GT:AD:DP:GQ:PL    1/1:7,8:15:9.03:118,9,0
19    54724808    .    G    C    43.33    MQFilter40    AC=2;AF=1.00;AN=2;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.25;MQ0=10;QD=3.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445347    GT:AD:DP:GQ:PL    1/1:5,8:13:6.02:75,6,0
19    54724902    .    G    A    86.85    MQFilter40    AC=2;AF=1.00;AN=2;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.01;MQ0=10;QD=6.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445347    GT:AD:DP:GQ:PL    1/1:1,13:14:12.01:119,12,0
19    54725019    rs78279726    G    A    229.57    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.38;MQ0=1;QD=22.96;SNPEFF_AMINO_ACID_CHANGE=Y297;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54724955_54725251;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270464    GT:AD:DP:GQ:PL    1/1:0,10:10:24.04:263,24,0
19    54725980    rs150024950    G    A    131.23    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=9;Dels=0.0;FS=7.782;HRun=1;HaplotypeScore=0.0;MQ=27.79;MQ0=2;MQRankSum=-0.742;QD=14.58;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=L126;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54725700_54726002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245620    GT:AD:DP:GQ:PL    0/1:3,6:9:21.96:161,0,22
19    54725992    rs148339740    G    A    199.69    MQFilter40    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=10;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.734;MQ=31.13;MQ0=1;MQRankSum=-0.751;QD=19.97;ReadPosRankSum=-0.751;SNPEFF_AMINO_ACID_CHANGE=S122;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54725700_54726002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245620    GT:AD:DP:GQ:PL    0/1:1,9:10:12.06:230,0,12
19    54726014    rs186662061    A    G    259.06    MQFilter40    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=18;Dels=0.0;FS=4.393;HRun=1;HaplotypeScore=0.9578;MQ=24.99;MQ0=5;MQRankSum=0.099;QD=14.39;ReadPosRankSum=1.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270464    GT:AD:DP:GQ:PL    0/1:4,14:18:6.94:289,0,7
19    54726082    .    C    T    66.03    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.19;MQ0=12;MQRankSum=2.0;QD=2.54;ReadPosRankSum=-3.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270464    GT:AD:DP:GQ:PL    0/1:16,10:26:61.96:96,0,62
19    54726162    rs56182917    T    G    54.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.61;MQ0=7;QD=4.56;SNPEFF_AMINO_ACID_CHANGE=M115L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54726150_54726434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245620    GT:AD:DP:GQ:PL    1/1:0,11:11:9.01:87,9,0
19    54726226    rs75672336    T    C    1257.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=27.05;MQ0=3;QD=24.65;SNPEFF_AMINO_ACID_CHANGE=A93;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54726150_54726434;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245620    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1290,126,0
19    54726324    rs79304773    G    C    285.80    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.61;MQ0=8;QD=12.99;SNPEFF_AMINO_ACID_CHANGE=H61D;SNPEFF_CODON_CHANGE=Cat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54726150_54726434;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245620    GT:AD:DP:GQ:PL    1/1:0,20:22:27.06:319,27,0
19    54726776    .    C    T    58.70    MQFilter40    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.97;MQ0=19;MQRankSum=0.198;QD=2.26;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270464    GT:AD:DP:GQ:PL    0/1:11,15:26:35.35:89,0,35
19    54726784    .    A    G    206.10    MQFilter40    AC=2;AF=1.00;AN=2;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=13.56;MQ0=17;QD=6.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270464    GT:AD:DP:GQ:PL    1/1:0,30:30:27.01:239,27,0
19    54742999    rs8100079    C    A    916.05    PASS    AB=0.22;AC=1;AF=0.50;AN=2;BaseQRankSum=3.449;DB;DP=41;Dels=0.0;FS=3.971;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.205;QD=22.34;ReadPosRankSum=-0.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474697    GT:AD:DP:GQ:PL    0/1:9,32:41:99:946,0,194
19    54743004    rs8099961    A    T    877.16    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=0.383;DB;DP=39;Dels=0.0;FS=10.855;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=1.317;QD=22.49;ReadPosRankSum=-0.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474697    GT:AD:DP:GQ:PL    0/1:9,30:39:99:907,0,225
19    54743057    rs73053480    G    A    696.48    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.063;DB;DP=30;Dels=0.0;FS=7.832;HRun=0;HaplotypeScore=0.8321;MQ=59.23;MQ0=0;MQRankSum=0.233;QD=23.22;ReadPosRankSum=0.596;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474697    GT:AD:DP:GQ:PL    0/1:6,24:30:99:726,0,161
19    54744654    rs139953837    G    A    407.13    MQFilter40    AB=0.179;AC=1;AF=0.50;AN=2;BaseQRankSum=0.861;DB;DP=28;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=25.23;MQ0=5;MQRankSum=-1.435;QD=14.54;ReadPosRankSum=-0.574;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474697    GT:AD:DP:GQ:PL    0/1:5,23:28:45.22:437,0,45
19    54745496    rs77659630    C    T    604.65    MQFilter40    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.472;DB;DP=130;Dels=0.0;FS=6.195;HRun=0;HaplotypeScore=3.4222;MQ=34.12;MQ0=1;MQRankSum=-3.167;QD=4.65;ReadPosRankSum=-1.524;SNPEFF_AMINO_ACID_CHANGE=R205Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54745452_54745754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245621    GT:AD:DP:GQ:PL    0/1:91,39:130:99:635,0,2068
19    54745550    rs71257443    G    T    178.74    MQFilter40;QDFilter2    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.637;DB;DP=90;Dels=0.0;FS=1.277;HRun=1;HaplotypeScore=0.0;MQ=33.71;MQ0=12;MQRankSum=-0.289;QD=1.99;ReadPosRankSum=0.894;SNPEFF_AMINO_ACID_CHANGE=T187N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54745452_54745754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245621    GT:AD:DP:GQ:PL    0/1:69,21:90:99:209,0,1748
19    54745845    rs149290594    G    T    937.44    MQFilter40    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=1.972;DB;DP=121;Dels=0.0;FS=4.298;HRun=0;HaplotypeScore=2.7766;MQ=33.59;MQ0=10;MQRankSum=-0.403;QD=7.75;ReadPosRankSum=-0.554;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245621    GT:AD:DP:GQ:PL    0/1:68,53:121:99:967,0,1328
19    54745907    rs62133127    A    G    1695.41    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.727;DB;DP=187;Dels=0.0;FS=7.976;HRun=0;HaplotypeScore=3.4224;MQ=43.37;MQ0=2;MQRankSum=4.092;QD=9.07;ReadPosRankSum=-1.826;SNPEFF_AMINO_ACID_CHANGE=M117T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54745902_54746186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245621    GT:AD:DP:GQ:PL    0/1:115,72:187:99:1725,0,2613
19    54745978    rs1052964    T    C    133.85    QDFilter2    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.253;DB;DP=200;Dels=0.0;FS=21.575;HRun=3;HaplotypeScore=1.445;MQ=46.49;MQ0=23;MQRankSum=-6.485;QD=0.67;ReadPosRankSum=-4.008;SNPEFF_AMINO_ACID_CHANGE=A93;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54745902_54746186;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245621    GT:AD:DP:GQ:PL    0/1:144,56:200:99:164,0,4419
19    54746081    rs28445220    T    C    1143.83    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.997;DB;DP=197;Dels=0.0;FS=1.235;HRun=0;HaplotypeScore=4.2564;MQ=46.48;MQ0=5;MQRankSum=-9.302;QD=5.81;ReadPosRankSum=2.638;SNPEFF_AMINO_ACID_CHANGE=Q59R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54745902_54746186;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245621    GT:AD:DP:GQ:PL    0/1:126,71:197:99:1174,0,4099
19    54746528    rs75130216    C    T    657.23    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.049;DB;DP=112;Dels=0.0;FS=14.515;HRun=0;HaplotypeScore=0.9159;MQ=33.36;MQ0=7;MQRankSum=-2.311;QD=5.87;ReadPosRankSum=0.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245621    GT:AD:DP:GQ:PL    0/1:70,42:112:99:687,0,1741
19    54754752    rs433291    T    C    969.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.16;MQ0=0;QD=25.52;SNPEFF_AMINO_ACID_CHANGE=L458;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54754331_54754796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345866    GT:AD:DP:GQ:PL    1/1:0,38:38:90.18:1003,90,0
19    54754820    rs429425    T    G    838.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.542;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=44.04;MQ0=0;MQRankSum=-0.433;QD=26.21;ReadPosRankSum=-0.65;SNPEFF_AMINO_ACID_CHANGE=L605F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54754269_54755032;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450632    GT:AD:DP:GQ:PL    1/1:1,31:32:38.18:872,38,0
19    54755133    rs12986064    T    C    161.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=22.27;MQ0=3;QD=16.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:2,8:10:18.04:195,18,0
19    54755635    rs624317    G    T    170.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=34.37;MQ0=1;QD=21.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:203,18,0
19    54755674    rs624263    C    A    107.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.02;MQ0=1;QD=11.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,9:9:12.03:140,12,0
19    54755709    rs12986034    G    A    233.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.57;MQ0=0;QD=23.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,10:10:24.05:267,24,0
19    54755860    rs393665    A    T    1579.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.46;MQ0=0;QD=29.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1613,132,0
19    54755911    rs12977057    C    T    2006.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.99;MQ0=0;QD=26.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2040,171,0
19    54755922    rs12977062    C    T    1982.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.52;MQ0=0;QD=25.42;SNPEFF_AMINO_ACID_CHANGE=A442T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54755917_54755969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345866    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2016,195,0
19    54755923    rs12976868    A    G    2038.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.68;MQ0=0;QD=25.8;SNPEFF_AMINO_ACID_CHANGE=D441;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54755917_54755969;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345866    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2071,198,0
19    54755994    rs417523    G    A    2376.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.76;MQ0=0;QD=34.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2410,184,0
19    54756024    rs405443    A    C    1400.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.06;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1434,120,0
19    54756302    rs415860    A    G    1579.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1613,123,0
19    54756657    rs434755    C    T    1732.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=36.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1766,132,0
19    54757676    rs2483832    T    C    55.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448962    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:88,9,0
19    54759102    rs393600    G    A    583.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.65;MQ0=0;QD=27.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316219    GT:AD:DP:GQ:PL    1/1:0,21:21:48.15:617,48,0
19    54759110    rs440352    G    A    652.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7719;MQ=58.65;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316219    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:685,51,0
19    54759361    rs12975366    T    C    768    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_AMINO_ACID_CHANGE=D147G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54759149_54759445;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000345866    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:801,60,0
19    54759571    rs380731    T    C    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316219    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
19    54759666    rs10405357    T    C    86.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316219    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    54760691    rs11879136    C    T    967.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.614;QD=33.37;ReadPosRankSum=1.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316219    GT:AD:DP:GQ:PL    1/1:1,28:29:46.39:1001,46,0
19    54778694    rs62134981    G    A    971.81    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.429;DB;DP=61;Dels=0.0;FS=6.857;HRun=0;HaplotypeScore=0.8321;MQ=54.63;MQ0=0;MQRankSum=1.308;QD=15.93;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314446    GT:AD:DP:GQ:PL    0/1:23,38:61:99:1002,0,553
19    54781010    rs3855678    T    C    83.38    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.68;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471216    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:113,0,30
19    54781466    rs3859538    C    G    92.81    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=9.7;HRun=4;HaplotypeScore=0.0;MQ=50.78;MQ0=0;MQRankSum=0.572;QD=11.6;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471216    GT:AD:DP:GQ:PL    0/1:2,6:8:52.81:123,0,53
19    54781509    rs1808548    C    T    101.28    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=9.7;HRun=0;HaplotypeScore=0.0;MQ=50.34;MQ0=0;MQRankSum=0.322;QD=12.66;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471216    GT:AD:DP:GQ:PL    0/1:3,5:8:66.03:131,0,66
19    54781843    rs4022330    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471216    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    54782407    rs1128646    C    T    668.74    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=3.154;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=59.47;MQ0=0;MQRankSum=0.248;QD=19.11;ReadPosRankSum=-1.488;SNPEFF_AMINO_ACID_CHANGE=R206H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54782114_54782416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434421    GT:AD:DP:GQ:PL    0/1:13,22:35:99:699,0,317
19    54782420    rs11666104    G    A    616.47    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=36;Dels=0.0;FS=1.998;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=-0.283;QD=17.12;ReadPosRankSum=0.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471216    GT:AD:DP:GQ:PL    0/1:15,21:36:99:646,0,459
19    54782565    rs66798302    TG    T    309.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=4;HaplotypeScore=49.5431;IndelType=D;MQ=50.7;MQ0=0;QD=31.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471216    GT:AD:DP:GQ:PL    1/1:1,9:10:30.09:352,30,0
19    54782589    rs586206    T    C    150.52    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=13;Dels=0.0;FS=2.632;HRun=2;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=-2.843;QD=11.58;ReadPosRankSum=0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471216    GT:AD:DP:GQ:PL    0/1:7,6:13:99:181,0,174
19    54782704    rs7247451    G    C    396.78    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.015;DB;DP=39;Dels=0.0;FS=3.584;HRun=1;HaplotypeScore=0.0;MQ=49.79;MQ0=0;MQRankSum=-5.218;QD=10.17;ReadPosRankSum=0.813;SNPEFF_AMINO_ACID_CHANGE=C190W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54782667_54782963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434421    GT:AD:DP:GQ:PL    0/1:22,17:39:99:427,0,706
19    54782710    rs7247208    A    G    293.17    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.035;DB;DP=39;Dels=0.0;FS=3.398;HRun=1;HaplotypeScore=0.0;MQ=51.49;MQ0=0;MQRankSum=-5.138;QD=7.52;ReadPosRankSum=1.742;SNPEFF_AMINO_ACID_CHANGE=S188;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54782667_54782963;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434421    GT:AD:DP:GQ:PL    0/1:25,14:39:99:323,0,795
19    54782724    rs7247538    G    A    319.71    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.031;DB;DP=40;Dels=0.0;FS=1.391;HRun=0;HaplotypeScore=0.9665;MQ=51.13;MQ0=0;MQRankSum=-4.509;QD=7.99;ReadPosRankSum=0.329;SNPEFF_AMINO_ACID_CHANGE=H184Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54782667_54782963;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434421    GT:AD:DP:GQ:PL    0/1:25,15:40:99:350,0,716
19    54783375    rs373032    T    A    1062.59    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.948;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.88;MQ0=0;MQRankSum=-1.43;QD=13.45;ReadPosRankSum=0.068;SNPEFF_AMINO_ACID_CHANGE=E161D;SNPEFF_CODON_CHANGE=gaA/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54783200_54783502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314446    GT:AD:DP:GQ:PL    0/1:43,36:79:99:1093,0,1173
19    54783923    rs366337    A    G    3108.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.6647;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_AMINO_ACID_CHANGE=I26;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54783646_54783930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314446    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3142,250,0
19    54784898    rs13345054    A    C    361.41    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.075;DB;DP=43;Dels=0.0;FS=8.129;HRun=0;HaplotypeScore=0.9916;MQ=54.37;MQ0=0;MQRankSum=-2.825;QD=8.4;ReadPosRankSum=0.501;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493242    GT:AD:DP:GQ:PL    0/1:24,19:43:99:391,0,869
19    54784908    rs13345069    C    A    352.47    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.274;DB;DP=39;Dels=0.0;FS=4.337;HRun=0;HaplotypeScore=1.9385;MQ=55.78;MQ0=0;MQRankSum=-1.111;QD=9.04;ReadPosRankSum=1.227;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493242    GT:AD:DP:GQ:PL    0/1:24,15:39:99:382,0,842
19    54800222    rs368178    A    G    69.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251390    GT:AD:DP:GQ:PL    1/1:0,5:5:11.99:102,12,0
19    54800225    rs368177    A    G    70.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251390    GT:AD:DP:GQ:PL    1/1:0,5:5:11.99:103,12,0
19    54818551    .    AG    A    84.23    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DP=16;FS=0.0;HRun=1;HaplotypeScore=180.0693;IndelType=D;MQ=39.12;MQ0=0;MQRankSum=-1.139;QD=5.26;ReadPosRankSum=3.091;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432233    GT:AD:DP:GQ:PL    0/1:9,6:16:90.01:123,0,90
19    54818555    .    AG    A    38.92    PASS    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=2.817;DP=19;FS=0.0;HRun=1;HaplotypeScore=190.1781;IndelType=D;MQ=43.1;MQ0=0;MQRankSum=-2.245;QD=2.05;ReadPosRankSum=2.327;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432233    GT:AD:DP:GQ:PL    0/1:14,5:19:77.95:78,0,281
19    54823533    rs1761463    T    C    1323.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.02;FS=0.0;HRun=2;HaplotypeScore=3.7518;MQ=59.44;MQ0=0;QD=32.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301219    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1357,105,0
19    54824177    rs1645785    C    T    813.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301219    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:846,63,0
19    54844626    rs16985578    T    G    40.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=1.026;QD=10.05;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421056    GT:AD:DP:GQ:PL    0/1:2,2:4:65.76:70,0,66
19    54867572    rs7257187    C    T    1120.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=T218;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54867563_54867615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAIR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391743    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1154,84,0
19    54871664    rs74463408    G    C    688.60    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=31.98;MQ0=2;QD=21.52;SNPEFF_AMINO_ACID_CHANGE=P109R;SNPEFF_CODON_CHANGE=cCg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54871629_54871679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAIR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391743    GT:AD:DP:GQ:PL    1/1:1,31:32:69.10:722,69,0
19    54876249    rs144488646    C    T    125.51    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.067;QD=8.97;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAIR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313038    GT:AD:DP:GQ:PL    0/1:9,5:14:99:156,0,292
19    54876324    rs3745441    T    C    1116.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.13;MQ0=0;QD=31.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAIR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313038    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1150,87,0
19    54881850    rs77507448    G    T    1387.86    MQFilter40    AB=0.152;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=27.24;MQ0=9;MQRankSum=1.256;QD=17.57;ReadPosRankSum=2.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAIR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313038    GT:AD:DP:GQ:PL    0/1:12,67:79:59.71:1418,0,60
19    54882068    rs4021843    A    G    62.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.46;MQ0=2;QD=12.5;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LAIR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313038    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:95,9,0
19    54930108    rs10417316    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301194    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
19    54937862    rs45477994    C    T    1694.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_AMINO_ACID_CHANGE=Y217;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54937850_54937945;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301194    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1727,126,0
19    54940303    rs3745428    T    A    212.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425969    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
19    54940471    rs889149    C    T    2074.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.07;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=1.579;QD=29.63;ReadPosRankSum=-1.274;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425969    GT:AD:DP:GQ:PL    1/1:2,68:70:99:2107,126,0
19    54942419    rs79275620    C    G    1002.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425969    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1035,75,0
19    54946784    rs3745420    A    G    501.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_AMINO_ACID_CHANGE=T427A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54946722_54946864;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTYH1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391739    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:535,42,0
19    54962374    rs1035450    A    G    741.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301196    GT:AD:DP:GQ:PL    1/1:0,26:26:69.17:774,69,0
19    54962467    rs1035451    G    A    2371.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5528;MQ=59.03;MQ0=0;MQRankSum=0.317;QD=32.94;ReadPosRankSum=0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436479    GT:AD:DP:GQ:PL    1/1:1,71:72:99:2405,181,0
19    54962579    rs1035452    C    T    2018.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8628;MQ=59.22;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301196    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2052,153,0
19    54962694    rs1035453    A    G    208.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301196    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:241,18,0
19    54963552    rs3813149    A    G    233.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301196    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:267,21,0
19    54964019    rs963352    C    T    591.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436479    GT:AD:DP:GQ:PL    1/1:0,16:16:48.13:625,48,0
19    54964608    rs4806762    G    A    154.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=30.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436479    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
19    54965527    rs7247170    C    T    461.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436479    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:494,36,0
19    54965860    rs3813148    G    A    573.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=K189;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54965609_54965861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301196    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:607,45,0
19    54965889    rs3813147    G    C    401.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436479    GT:AD:DP:GQ:PL    1/1:0,17:17:36.09:434,36,0
19    54966579    rs889147    C    G    991.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=P249;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54966543_54966746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301196    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1024,81,0
19    54969075    rs45605939    C    T    1376.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=33.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439657    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1409,108,0
19    54970369    rs2277977    G    C    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439657    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
19    54971229    rs3745437    T    C    193.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42EP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301200    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
19    54973280    rs10423424    C    G    2121.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.933;MQ=59.29;MQ0=0;QD=32.63;SNPEFF_AMINO_ACID_CHANGE=R499P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54972981_54974894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333834    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2154,166,0
19    54973988    rs140013148    GCCT    G    2703.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=0;HaplotypeScore=269.4811;IndelType=D;MQ=56.21;MQ0=0;QD=45.06;SNPEFF_AMINO_ACID_CHANGE=EA262A;SNPEFF_CODON_CHANGE=gaggca/gca;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_19_54972981_54974894;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333834    GT:AD:DP:GQ:PL    1/1:3,57:60:99:2745,169,0
19    54974318    rs10406453    T    C    238.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_AMINO_ACID_CHANGE=H153R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_54972981_54974894;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LENG9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333834    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:271,21,0
19    55009497    rs3865495    A    C    1297.88    MQFilter40    AB=0.259;AC=1;AF=0.50;AN=2;BaseQRankSum=3.484;DB;DP=81;Dels=0.0;FS=6.266;HRun=2;HaplotypeScore=0.9832;MQ=32.04;MQ0=12;MQRankSum=0.953;QD=16.02;ReadPosRankSum=0.706;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAIR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412608    GT:AD:DP:GQ:PL    0/1:21,60:81:99:1328,0,214
19    55013987    rs2042288    A    G    40.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.248;QD=4.53;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAIR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412608    GT:AD:DP:GQ:PL    0/1:6,3:9:70.76:71,0,209
19    55014088    rs2042287    C    T    266.06    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DB;DP=31;Dels=0.0;FS=2.277;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=8.58;ReadPosRankSum=0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAIR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412608    GT:AD:DP:GQ:PL    0/1:21,10:31:99:296,0,660
19    55019371    rs61737870    C    G    667.98    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=2.051;DB;DP=47;Dels=0.0;FS=4.862;HRun=0;HaplotypeScore=0.0;MQ=55.49;MQ0=0;MQRankSum=-0.022;QD=14.21;ReadPosRankSum=0.662;SNPEFF_AMINO_ACID_CHANGE=H112Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55019106_55019399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAIR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301202    GT:AD:DP:GQ:PL    0/1:21,25:47:99:698,0,672
19    55019379    rs34429135    T    A    600.51    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.221;DB;DP=48;Dels=0.0;FS=4.79;HRun=0;HaplotypeScore=0.0;MQ=54.93;MQ0=0;MQRankSum=-1.226;QD=12.51;ReadPosRankSum=-0.644;SNPEFF_AMINO_ACID_CHANGE=F115Y;SNPEFF_CODON_CHANGE=tTc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55019106_55019399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAIR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301202    GT:AD:DP:GQ:PL    0/1:21,27:48:99:630,0,700
19    55019402    rs2277974    A    G    427.84    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.557;DB;DP=46;Dels=0.0;FS=3.341;HRun=0;HaplotypeScore=0.9916;MQ=55.13;MQ0=0;MQRankSum=-1.627;QD=9.3;ReadPosRankSum=-1.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAIR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412608    GT:AD:DP:GQ:PL    0/1:24,22:46:99:458,0,772
19    55019438    rs2277973    A    G    252.84    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.244;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.07;MQ0=0;MQRankSum=-2.211;QD=9.03;ReadPosRankSum=0.507;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAIR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412608    GT:AD:DP:GQ:PL    0/1:13,15:28:99:283,0,451
19    55021895    rs8102425    C    T    219.13    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.688;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.4;MQ0=0;MQRankSum=0.543;QD=10.43;ReadPosRankSum=-0.616;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAIR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412608    GT:AD:DP:GQ:PL    0/1:13,8:21:99:249,0,467
19    55044228    rs10553990    TTC    T    737.15    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=1.779;DB;DP=44;FS=15.147;HRun=0;HaplotypeScore=344.6392;IndelType=D;MQ=50.46;MQ0=0;MQRankSum=-1.562;QD=16.75;ReadPosRankSum=0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIR3DX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335056    GT:AD:DP:GQ:PL    0/1:25,19:44:99:776,0,595
19    55044241    rs74177858    C    CT    240.77    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=2.272;DB;DP=55;FS=0.0;HRun=14;HaplotypeScore=481.198;IndelType=I;MQ=51.05;MQ0=0;MQRankSum=-1.232;QD=4.38;ReadPosRankSum=-1.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIR3DX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335056    GT:AD:DP:GQ:PL    0/1:39,14:55:99:280,0,112
19    55047013    rs139549775    G    A    730.61    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.491;DB;DP=56;Dels=0.0;FS=6.833;HRun=0;HaplotypeScore=3.3089;MQ=59.59;MQ0=0;MQRankSum=-0.583;QD=13.05;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=T186;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55046805_55047110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIR3DX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335056    GT:AD:DP:GQ:PL    0/1:30,26:56:99:761,0,820
19    55047218    rs79410050    C    T    264.18    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.449;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=13.9;ReadPosRankSum=-1.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIR3DX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335056    GT:AD:DP:GQ:PL    0/1:10,9:19:99:294,0,362
19    55049086    rs72046206    GAA    G    137.38    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=1.503;DB;DP=23;FS=0.0;HRun=5;HaplotypeScore=169.401;IndelType=D;MQ=47.75;MQ0=0;MQRankSum=-2.105;QD=5.97;ReadPosRankSum=0.167;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIR3DX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335056    GT:AD:DP:GQ:PL    0/1:18,5:23:99:176,0,669
19    55054854    rs12975662    G    A    349.70    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.6;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=2.266;QD=11.66;ReadPosRankSum=-0.145;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KIR3DX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465702    GT:AD:DP:GQ:PL    0/1:16,14:30:99:380,0,512
19    55086106    rs45497601    C    G    734.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.507;DB;DP=45;Dels=0.0;FS=2.744;HRun=2;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=0.837;QD=16.31;ReadPosRankSum=-1.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000251376    GT:AD:DP:GQ:PL    0/1:20,25:45:99:764,0,663
19    55086775    rs1052120    C    T    2285.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.24;MQ0=0;QD=30.47;SNPEFF_AMINO_ACID_CHANGE=P224;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55086723_55087019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391737    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2319,178,0
19    55144186    rs272423    C    T    1648.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.382;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.55;MQ0=0;MQRankSum=2.36;QD=29.44;ReadPosRankSum=0.517;SNPEFF_AMINO_ACID_CHANGE=S311;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55143915_55144211;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LILRB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324602    GT:AD:DP:GQ:PL    1/1:2,54:56:99:1682,132,0
19    55174498    rs28366008    T    C    1863.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=F46L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55174271_55174519;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420271    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1897,147,0
19    55175596    rs5828594    T    TGTGGGAG    3161.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=188.7313;IndelType=I;MQ=36.14;MQ0=0;QD=70.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420271    GT:AD:DP:GQ:PL    1/1:15,23:38:87.30:3203,87,0
19    55175740    rs3745871    C    T    702.32    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.12;DB;DP=64;Dels=0.0;FS=6.937;HRun=3;HaplotypeScore=1.4105;MQ=55.9;MQ0=0;MQRankSum=-0.199;QD=10.97;ReadPosRankSum=-2.66;SNPEFF_AMINO_ACID_CHANGE=F153;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55175637_55175936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270452    GT:AD:DP:GQ:PL    0/1:33,31:64:99:732,0,992
19    55176262    rs731170    A    G    790.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_AMINO_ACID_CHANGE=D223G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55176250_55176300;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270452    GT:AD:DP:GQ:PL    1/1:0,24:24:60.20:823,60,0
19    55176535    rs1925241    C    T    180.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=16;Dels=0.0;FS=2.081;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=11.26;ReadPosRankSum=0.578;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420271    GT:AD:DP:GQ:PL    0/1:8,8:16:99:210,0,236
19    55178035    rs1749317    A    G    297.56    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.14;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=58.23;MQ0=0;MQRankSum=-0.199;QD=10.26;ReadPosRankSum=1.041;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420271    GT:AD:DP:GQ:PL    0/1:17,12:29:99:328,0,553
19    55178162    rs11574576    A    G    1571.89    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=2.129;DB;DP=94;Dels=0.0;FS=3.991;HRun=1;HaplotypeScore=2.5795;MQ=59.17;MQ0=0;MQRankSum=2.09;QD=16.72;ReadPosRankSum=0.097;SNPEFF_AMINO_ACID_CHANGE=N334D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55178148_55178200;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434286    GT:AD:DP:GQ:PL    0/1:40,54:94:99:1602,0,1144
19    55178968    rs2569716    G    A    236.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.81;MQ0=0;QD=23.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420271    GT:AD:DP:GQ:PL    1/1:0,10:10:24.03:269,24,0
19    55179364    rs1048801    A    G    881.75    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.102;DB;DP=81;Dels=0.0;FS=0.874;HRun=1;HaplotypeScore=0.7887;MQ=51.44;MQ0=3;MQRankSum=-0.07;QD=10.89;ReadPosRankSum=-0.57;SNPEFF_AMINO_ACID_CHANGE=Q361R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55179324_55179848;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LILRB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391734    GT:AD:DP:GQ:PL    0/1:43,38:81:99:912,0,1194
19    55209195    rs16985866    C    A    123.73    QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.223;DB;DP=67;Dels=0.0;FS=1.389;HRun=1;HaplotypeScore=0.8321;MQ=46.68;MQ0=1;MQRankSum=-2.223;QD=1.85;ReadPosRankSum=-0.194;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LILRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444199    GT:AD:DP:GQ:PL    0/1:54,13:67:99:154,0,1773
19    55209313    rs4806810    G    C    750.73    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.93;DB;DP=75;Dels=0.0;FS=8.345;HRun=0;HaplotypeScore=1.8533;MQ=55.0;MQ0=0;MQRankSum=1.129;QD=10.01;ReadPosRankSum=1.052;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LILRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444199    GT:AD:DP:GQ:PL    0/1:46,29:75:99:781,0,1403
19    55209659    rs1811381    A    C    487.63    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.409;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.17;MQ0=0;MQRankSum=-3.076;QD=15.24;ReadPosRankSum=0.853;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LILRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444199    GT:AD:DP:GQ:PL    0/1:15,17:32:99:518,0,423
19    55209663    rs8105387    C    T    441.60    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.98;MQ0=0;MQRankSum=-2.637;QD=14.25;ReadPosRankSum=0.753;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LILRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444199    GT:AD:DP:GQ:PL    0/1:14,17:31:99:472,0,347
19    55209757    rs8105401    A    G    282.96    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.449;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=-1.837;QD=14.89;ReadPosRankSum=0.776;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LILRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444199    GT:AD:DP:GQ:PL    0/1:9,10:19:99:313,0,243
19    55209763    rs8105505    C    G    272.93    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=19;Dels=0.0;FS=1.913;HRun=1;HaplotypeScore=0.9973;MQ=58.38;MQ0=0;MQRankSum=-0.612;QD=14.36;ReadPosRankSum=1.184;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LILRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444199    GT:AD:DP:GQ:PL    0/1:9,10:19:99:303,0,213
19    55209827    rs6509897    T    G    68.91    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.754;QD=9.84;ReadPosRankSum=1.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LILRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444199    GT:AD:DP:GQ:PL    0/1:4,3:7:98.90:99,0,129
19    55209867    rs11668124    G    A    68.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=58.25;MQ0=0;MQRankSum=-1.231;QD=13.66;ReadPosRankSum=1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LILRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444199    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:98,0,65
19    55236571    rs71365488    A    G    63.79    MQFilter40    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=20.59;MQ0=1;MQRankSum=-0.736;QD=9.11;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396284    GT:AD:DP:GQ:PL    0/1:1,6:7:12.65:94,0,13
19    55236642    rs75827984    G    A    82.65    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.4;MQ0=4;MQRankSum=0.0;QD=5.17;ReadPosRankSum=0.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396284    GT:AD:DP:GQ:PL    0/1:10,6:16:99:113,0,149
19    55236800    rs62131755    T    C    67.39    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.31;MQ0=32;QD=1.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396284    GT:AD:DP:GQ:PL    1/1:0,38:38:9.02:99,9,0
19    55237899    rs34502004    A    C    830.72    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=23.48;MQ0=1;QD=24.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396284    GT:AD:DP:GQ:PL    1/1:0,34:34:93.08:864,93,0
19    55267351    rs4806539    G    C    74.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=47.55;MQ0=0;MQRankSum=-1.231;QD=15.0;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342376    GT:AD:DP:GQ:PL    0/1:2,3:5:56.34:105,0,56
19    55267464    rs4806441    T    C    218.83    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=2.86;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.03;MQ0=0;MQRankSum=-4.917;QD=5.61;ReadPosRankSum=0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342376    GT:AD:DP:GQ:PL    0/1:25,14:39:99:249,0,829
19    55267526    rs72487177    T    C    484.72    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8301;MQ=49.68;MQ0=4;MQRankSum=-5.636;QD=5.05;ReadPosRankSum=2.253;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342376    GT:AD:DP:GQ:PL    0/1:65,30:96:99:515,0,2055
19    55267541    rs10411837    C    G    545.67    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.161;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=49.15;MQ0=4;MQRankSum=-6.323;QD=4.96;ReadPosRankSum=-0.593;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342376    GT:AD:DP:GQ:PL    0/1:76,34:110:99:576,0,2359
19    55267623    rs10411866    A    C    398.71    PASS    AB=0.748;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.09;DB;DP=107;Dels=0.0;FS=0.946;HRun=0;HaplotypeScore=1.5767;MQ=43.02;MQ0=7;MQRankSum=-5.428;QD=3.73;ReadPosRankSum=2.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342376    GT:AD:DP:GQ:PL    0/1:80,27:107:99:429,0,2169
19    55267679    rs10411898    A    G    104.40    QDFilter2    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.905;DB;DP=62;Dels=0.0;FS=4.073;HRun=3;HaplotypeScore=1.79;MQ=51.67;MQ0=2;MQRankSum=-3.561;QD=1.68;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342376    GT:AD:DP:GQ:PL    0/1:51,11:62:99:134,0,1864
19    55267823    rs55788024    C    T    133.89    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.09;MQ0=0;MQRankSum=-0.198;QD=19.13;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342376    GT:AD:DP:GQ:PL    0/1:2,5:7:52.88:164,0,53
19    55269871    rs140641208    G    A    63.42    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.788;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=19.09;MQ0=4;MQRankSum=-0.831;QD=3.52;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:10,8:18:93.41:93,0,133
19    55270155    rs3204391    C    G    1181.25    MQFilter40    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.539;DB;DP=164;Dels=0.0;FS=15.187;HRun=0;HaplotypeScore=0.0;MQ=33.54;MQ0=42;MQRankSum=-4.879;QD=7.2;ReadPosRankSum=0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:95,69:164:99:1211,0,2090
19    55270178    rs7408376    A    G    1387.26    MQFilter40    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.197;DB;DP=163;Dels=0.0;FS=12.338;HRun=3;HaplotypeScore=1.7781;MQ=38.4;MQ0=16;MQRankSum=-6.167;QD=8.51;ReadPosRankSum=-0.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:79,84:163:99:1417,0,2255
19    55270229    rs4806543    T    C    2213.15    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.505;DB;DP=197;Dels=0.0;FS=0.572;HRun=0;HaplotypeScore=1.8216;MQ=47.59;MQ0=9;MQRankSum=-6.435;QD=11.23;ReadPosRankSum=-0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:89,108:197:99:2243,0,2821
19    55271850    rs11670980    T    G    991.15    HaplotypeScoreFilter13;MQFilter40    AB=0.664;AC=1;AF=0.50;AN=2;BaseQRankSum=0.98;DB;DP=135;Dels=0.0;FS=1.001;HRun=0;HaplotypeScore=38.3769;MQ=37.84;MQ0=6;MQRankSum=2.242;QD=7.34;ReadPosRankSum=0.879;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:89,45:135:99:1021,0,2219
19    55271856    rs147016424    G    A    563.33    HaplotypeScoreFilter13;MQFilter40    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=6.912;DB;DP=147;Dels=0.0;FS=3.594;HRun=0;HaplotypeScore=42.3366;MQ=38.15;MQ0=6;MQRankSum=-5.77;QD=3.83;ReadPosRankSum=-1.023;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:102,45:147:99:593,0,2725
19    55271998    rs10408729    G    C    1439.51    MQFilter40    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.325;DB;DP=200;Dels=0.0;FS=12.648;HRun=0;HaplotypeScore=1.5767;MQ=29.47;MQ0=40;MQRankSum=-3.68;QD=7.2;ReadPosRankSum=-0.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:91,108:200:99:1469,0,1882
19    55275116    rs11666441    T    C    34.98    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.14;MQ0=0;MQRankSum=-0.922;QD=4.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:4,4:8:64.97:65,0,120
19    55275334    rs7247700    A    G    70.33    MQFilter40;QDFilter2    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.125;DB;DP=178;Dels=0.0;FS=4.191;HRun=0;HaplotypeScore=0.6651;MQ=19.32;MQ0=47;MQRankSum=-2.373;QD=0.4;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:148,30:178:99:100,0,2041
19    55275387    rs62121577    A    G    163.02    MQFilter40;QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.801;DB;DP=168;Dels=0.0;FS=6.475;HRun=0;HaplotypeScore=1.5774;MQ=17.42;MQ0=62;MQRankSum=-1.634;QD=0.97;ReadPosRankSum=0.479;SNPEFF_AMINO_ACID_CHANGE=K237E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55275343_55275393;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:135,33:168:99:193,0,1436
19    55275514    rs7247958    A    G    84.56    MQFilter40    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.976;DB;DP=38;Dels=0.0;FS=6.842;HRun=0;HaplotypeScore=0.0;MQ=31.78;MQ0=2;MQRankSum=-3.261;QD=2.23;ReadPosRankSum=-0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:23,15:38:99:115,0,772
19    55278239    rs3855676    T    C    55.26    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;MQRankSum=-1.231;QD=11.05;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:2,3:5:59.04:85,0,59
19    55278402    rs10427148    A    T    458.59    MQFilter40    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.667;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8989;MQ=36.0;MQ0=2;MQRankSum=0.05;QD=12.39;ReadPosRankSum=-1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:18,19:37:99:489,0,448
19    55278546    rs11665796    G    A    2541    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=149;Dels=0.0;FS=3.813;HRun=1;HaplotypeScore=4.4889;MQ=55.94;MQ0=0;MQRankSum=0.311;QD=17.05;ReadPosRankSum=-1.155;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    1/1:2,79:149:99:2574,159,0
19    55278607    rs2365247    C    T    2657.70    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.727;DB;DP=187;Dels=0.0;FS=0.549;HRun=0;HaplotypeScore=6.0511;MQ=58.48;MQ0=0;MQRankSum=0.853;QD=14.21;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:90,95:187:99:2688,0,2802
19    55278805    rs34684434    A    C    2594.28    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.859;DB;DP=202;Dels=0.0;FS=1.808;HRun=0;HaplotypeScore=1.8499;MQ=58.33;MQ0=0;MQRankSum=0.661;QD=12.84;ReadPosRankSum=-1.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:99,103:202:99:2624,0,3018
19    55278865    rs35075966    C    T    1522.43    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.248;DB;DP=105;Dels=0.0;FS=1.111;HRun=0;HaplotypeScore=0.0;MQ=54.55;MQ0=0;MQRankSum=-0.529;QD=14.5;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434419    GT:AD:DP:GQ:PL    0/1:55,50:105:99:1552,0,1568
19    55281368    rs4806554    T    C    121.67    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.388;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=49.32;MQ0=1;MQRankSum=-3.265;QD=2.83;ReadPosRankSum=0.463;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:29,14:43:99:152,0,865
19    55281370    rs4806555    A    C    130.21    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.961;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=49.23;MQ0=1;MQRankSum=-3.633;QD=3.03;ReadPosRankSum=1.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:30,13:43:99:160,0,859
19    55286822    rs28465191    C    A    288.49    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=4.864;DB;DP=125;Dels=0.0;FS=26.469;HRun=1;HaplotypeScore=1.9576;MQ=43.28;MQ0=4;MQRankSum=-7.157;QD=2.31;ReadPosRankSum=-0.523;SNPEFF_AMINO_ACID_CHANGE=H192Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55286617_55286910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:87,38:125:99:318,0,2602
19    55286828    .    G    A    333.74    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DP=135;Dels=0.0;FS=22.266;HRun=1;HaplotypeScore=0.0;MQ=41.06;MQ0=4;MQRankSum=-6.874;QD=2.47;ReadPosRankSum=-0.931;SNPEFF_AMINO_ACID_CHANGE=G194;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55286617_55286910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:92,43:135:99:364,0,2765
19    55286864    rs77397437    A    C    616.86    MQFilter40    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.952;DB;DP=160;Dels=0.0;FS=6.576;HRun=2;HaplotypeScore=0.0;MQ=37.78;MQ0=7;MQRankSum=-7.218;QD=3.86;ReadPosRankSum=0.078;SNPEFF_AMINO_ACID_CHANGE=P206;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55286617_55286910;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:99,61:160:99:647,0,2811
19    55287015    .    C    T    115    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.546;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9862;MQ=23.54;MQ0=10;MQRankSum=-0.712;QD=2.56;ReadPosRankSum=2.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:30,15:45:99:145,0,436
19    55287019    .    G    T    119.22    MQFilter40    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.914;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9862;MQ=23.75;MQ0=9;MQRankSum=-0.682;QD=2.98;ReadPosRankSum=1.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:25,14:40:99:149,0,404
19    55294252    rs35297315    C    T    433.60    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.542;DB;DP=35;Dels=0.0;FS=2.618;HRun=0;HaplotypeScore=0.5784;MQ=26.25;MQ0=1;MQRankSum=-0.437;QD=12.39;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:14,21:35:99:464,0,256
19    55294927    rs77983592    A    G    391.81    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.633;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=43.48;MQ0=1;MQRankSum=-6.411;QD=4.61;ReadPosRankSum=-1.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:53,32:85:99:422,0,1524
19    55295426    rs56114641    T    A    176.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.49;MQ0=1;QD=17.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    1/1:0,10:10:23.97:209,24,0
19    55297955    rs4806560    T    C    714.07    MQFilter40    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.172;DB;DP=89;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9789;MQ=30.01;MQ0=31;MQRankSum=-0.155;QD=8.02;ReadPosRankSum=0.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291633    GT:AD:DP:GQ:PL    0/1:40,49:89:99:744,0,675
19    55315307    rs2295802    C    G    816.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.12;MQ0=1;QD=24.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345540    GT:AD:DP:GQ:PL    1/1:1,32:33:84.12:849,84,0
19    55317456    rs1051454    G    A    318.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.29;MQ0=77;QD=3.62;SNPEFF_AMINO_ACID_CHANGE=A136T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55317406_55317699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR2DL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396284    GT:AD:DP:GQ:PL    1/1:39,49:88:30.08:352,30,0
19    55329901    rs45556431    A    G    192.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.01;MQ0=5;QD=8.75;SNPEFF_AMINO_ACID_CHANGE=I46V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55329770_55330054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355608    GT:AD:DP:GQ:PL    1/1:0,22:22:23.99:225,24,0
19    55329922    rs1049150    A    T    448.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.63;MQ0=5;QD=15.48;SNPEFF_AMINO_ACID_CHANGE=I53L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55329770_55330054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355608    GT:AD:DP:GQ:PL    1/1:0,29:29:45.07:482,45,0
19    55333096    rs1049209    T    C    1010.48    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.47;MQ0=18;QD=18.71;SNPEFF_AMINO_ACID_CHANGE=C149;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55333020_55333313;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358178    GT:AD:DP:GQ:PL    1/1:12,42:54:90.19:1043,90,0
19    55340685    rs4806579    A    G    619.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326542    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:653,48,0
19    55344050    rs4806453    T    C    95.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.61;MQ0=0;QD=23.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326542    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:128,12,0
19    55344170    rs78732506    C    T    296.22    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.17;MQ0=2;QD=19.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326542    GT:AD:DP:GQ:PL    1/1:2,13:15:27.08:329,27,0
19    55346373    rs4806583    C    T    545.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.98;MQ0=1;QD=30.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326542    GT:AD:DP:GQ:PL    1/1:1,17:18:48.11:578,48,0
19    55346409    rs4806584    T    A    1066.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.33;MQ0=0;QD=38.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326542    GT:AD:DP:GQ:PL    1/1:0,28:28:81.27:1100,81,0
19    55346424    rs4806585    C    A    1402.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=35.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326542    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1435,111,0
19    55348957    rs12459407    G    T    1756.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=35.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402254    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1789,138,0
19    55349541    rs35360844    A    C    175.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=29.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402254    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:208,18,0
19    55350666    rs12460121    C    A    80.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402254    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
19    55350963    rs11269227    T    TCCCGGAGCTCCTATGACATGTA    9184.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.0;HRun=0;HaplotypeScore=640.2572;IndelType=I;MQ=34.99;MQ0=0;QD=183.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402254    GT:AD:DP:GQ:PL    1/1:37,9:46:99:9185,123,0
19    55363855    rs2043329    G    A    257.97    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.24;MQ0=4;QD=12.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402254    GT:AD:DP:GQ:PL    1/1:2,17:20:30.03:291,30,0
19    55377583    rs3745900    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402254    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    55378008    rs3745902    C    T    3380.45    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=5.917;DB;DP=235;Dels=0.0;FS=1.024;HRun=0;HaplotypeScore=4.8051;MQ=59.31;MQ0=0;MQRankSum=-1.306;QD=14.38;ReadPosRankSum=-0.159;SNPEFF_AMINO_ACID_CHANGE=T380M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55377977_55378415;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIR3DL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270442    GT:AD:DP:GQ:PL    0/1:120,115:235:99:3380,0,3293
19    55386890    rs11084377    A    G    1306.79    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.272;DB;DP=74;Dels=0.0;FS=3.367;HRun=1;HaplotypeScore=1.5762;MQ=59.38;MQ0=0;MQRankSum=0.908;QD=17.66;ReadPosRankSum=0.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345937    GT:AD:DP:GQ:PL    0/1:30,44:74:99:1337,0,1006
19    55396613    rs10402324    G    A    498.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345937    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:532,39,0
19    55396900    rs1865096    A    G    925.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.3123;MQ=59.23;MQ0=0;QD=30.86;SNPEFF_AMINO_ACID_CHANGE=R108;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55396647_55396937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCAR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000345937    GT:AD:DP:GQ:PL    1/1:0,29:30:72.22:959,72,0
19    55399311    rs7258679    G    T    615.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FCAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345937    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:649,48,0
19    55417731    rs2278427    G    A    181.96    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.396;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.15;MQ0=0;MQRankSum=-0.079;QD=8.27;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:15,7:22:99:212,0,439
19    55417769    rs45609140    A    T    126.06    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.784;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8188;MQ=60.0;MQ0=0;MQRankSum=1.608;QD=6.3;ReadPosRankSum=0.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:14,6:20:99:156,0,449
19    55418054    rs2278428    A    C    664.82    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.785;DB;DP=45;Dels=0.0;FS=1.238;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=14.77;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=K82Q;SNPEFF_CODON_CHANGE=Aaa/Caa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55417881_55418165;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:21,24:45:99:695,0,700
19    55420461    rs7257673    A    G    54.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=11.0;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:2,3:5:64.77:85,0,65
19    55420801    rs3765013    C    A    479.23    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=3.415;DB;DP=49;Dels=0.0;FS=2.499;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-1.497;QD=9.78;ReadPosRankSum=-0.738;SNPEFF_AMINO_ACID_CHANGE=R185;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55420604_55420882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:29,20:49:99:509,0,879
19    55420924    rs3765014    C    G    318.74    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.39;DB;DP=26;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.232;QD=12.26;ReadPosRankSum=-1.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:15,11:26:99:349,0,395
19    55421045    rs75044663    G    A    103.66    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=20.73;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:134,0,27
19    55421208    rs3760862    C    T    68.48    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=9.78;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:3,4:7:98.48:98,0,104
19    55421315    .    AAG    A    223.96    PASS    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=3.333;DP=88;FS=3.1;HRun=0;HaplotypeScore=800.3502;IndelType=D;MQ=45.77;MQ0=0;MQRankSum=-1.648;QD=2.54;ReadPosRankSum=3.315;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:79,9:88:99:263,0,440
19    55421316    .    AG    A    276.55    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=4.948;DP=89;FS=3.093;HRun=1;HaplotypeScore=769.0407;IndelType=D;MQ=47.29;MQ0=0;MQRankSum=-3.789;QD=3.11;ReadPosRankSum=2.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:73,15:89:99:316,0,541
19    55423488    rs73619967    T    C    359.69    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=1.321;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.493;QD=9.22;ReadPosRankSum=-1.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:22,17:39:99:390,0,576
19    55423530    rs73619969    C    T    488.03    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.221;QD=8.71;ReadPosRankSum=-0.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291890    GT:AD:DP:GQ:PL    0/1:37,19:56:99:518,0,1123
19    55438831    rs269931    G    T    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:2,2:4:70.37:71,0,70
19    55438850    rs269932    A    G    37.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.48;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:2,2:4:67.92:68,0,71
19    55438940    rs3032919    AAAAC    A    758    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=4.478;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=163.2419;IndelType=D;MQ=58.36;MQ0=0;MQRankSum=0.034;QD=22.29;ReadPosRankSum=-0.172;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:17,17:34:99:797,0,1219
19    55439166    rs269933    T    C    835.54    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.089;DB;DP=61;Dels=0.0;FS=11.976;HRun=2;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-1.222;QD=13.7;ReadPosRankSum=-0.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:32,29:61:99:866,0,964
19    55439197    rs269934    A    C    469.56    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.873;DB;DP=43;Dels=0.0;FS=6.663;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.668;QD=10.92;ReadPosRankSum=1.616;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:24,19:43:99:500,0,683
19    55441643    rs269948    C    T    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
19    55441769    rs269949    G    A    32.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=8.09;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:2,2:4:27.95:62,0,28
19    55441902    rs269950    T    C    755.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.575;DB;DP=61;Dels=0.0;FS=3.309;HRun=0;HaplotypeScore=2.664;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=12.38;ReadPosRankSum=-1.051;SNPEFF_AMINO_ACID_CHANGE=I667V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55441867_55441965;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399724    GT:AD:DP:GQ:PL    0/1:35,25:61:99:785,0,1124
19    55441995    rs269951    A    G    902.67    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.7;MQ0=0;MQRankSum=0.56;QD=11.72;ReadPosRankSum=-1.34;SNPEFF_AMINO_ACID_CHANGE=Y866;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55441867_55442034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448121    GT:AD:DP:GQ:PL    0/1:43,34:77:99:933,0,1229
19    55445775    rs104895521    G    GC    1063.48    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.252;DB;DP=47;FS=1.33;HRun=0;HaplotypeScore=124.5388;IndelType=I;MQ=59.31;MQ0=0;MQRankSum=0.172;QD=22.63;ReadPosRankSum=1.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:20,27:47:99:1103,0,661
19    55447501    rs7359934    G    A    33.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.72;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:3,2:5:63.58:64,0,99
19    55447572    rs775876    A    G    648.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    1/1:0,23:23:57.14:681,57,0
19    55447595    rs7359929    A    G    363.77    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.653;DB;DP=30;Dels=0.0;FS=3.744;HRun=2;HaplotypeScore=1.4942;MQ=59.23;MQ0=0;MQRankSum=-0.642;QD=12.13;ReadPosRankSum=0.509;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:13,17:30:99:394,0,354
19    55447612    rs17699561    G    T    454.48    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=2.602;DB;DP=33;Dels=0.0;FS=1.44;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.095;QD=13.77;ReadPosRankSum=1.121;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:14,19:33:99:484,0,359
19    55447840    rs4806626    A    C    242.97    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.805;DB;DP=23;Dels=0.0;FS=4.434;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.134;QD=10.56;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:13,10:23:99:273,0,390
19    55449268    rs71962779    C    CAAA    504.97    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.159;DB;DP=55;FS=0.0;HRun=21;HaplotypeScore=697.2212;IndelType=I;MQ=34.99;MQ0=0;MQRankSum=-2.388;QD=9.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:41,6:55:55.83:544,0,56
19    55449289    .    AG    A    112.11    QDFilter2    AB=0.893;AC=1;AF=0.50;AN=2;BaseQRankSum=4.869;DP=91;FS=0.0;HRun=1;HaplotypeScore=927.7586;IndelType=D;MQ=42.71;MQ0=0;MQRankSum=-5.822;QD=1.22;ReadPosRankSum=-2.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:81,8:91:99:151,0,731
19    55449755    rs775879    G    A    59.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=19.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:92,9,0
19    55451050    rs10418277    C    T    183.28    MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.062;DB;DP=32;Dels=0.0;FS=1.657;HRun=2;HaplotypeScore=2.3565;MQ=32.19;MQ0=2;MQRankSum=-0.104;QD=5.73;ReadPosRankSum=-0.478;SNPEFF_AMINO_ACID_CHANGE=K146;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55450256_55451210;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399724    GT:AD:DP:GQ:PL    0/1:18,14:32:99:213,0,375
19    55451232    rs775882    C    T    291.33    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.054;DB;DP=26;Dels=0.0;FS=1.58;HRun=0;HaplotypeScore=0.0;MQ=53.17;MQ0=0;MQRankSum=-0.849;QD=11.2;ReadPosRankSum=0.077;SNPEFF_AMINO_ACID_CHANGE=V319I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55450256_55451834;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:14,12:26:99:321,0,446
19    55451797    rs775883    C    T    3474.27    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.256;DB;DP=250;DS;Dels=0.0;FS=0.466;HRun=1;HaplotypeScore=5.0826;MQ=59.83;MQ0=0;MQRankSum=-2.684;QD=13.9;ReadPosRankSum=1.142;SNPEFF_AMINO_ACID_CHANGE=Q130;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55450256_55451834;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:134,115:250:99:3474,0,3944
19    55451890    rs775884    T    C    1712.17    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.198;DB;DP=127;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.166;QD=13.48;ReadPosRankSum=-0.841;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:68,59:127:99:1742,0,2238
19    55452749    rs72451143    C    CAAA    164.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=25;HaplotypeScore=202.277;IndelType=I;MQ=40.35;MQ0=0;QD=7.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    1/1:13,5:21:22.15:206,22,0
19    55453134    rs775886    G    A    81.39    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.635;QD=6.26;ReadPosRankSum=0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328092    GT:AD:DP:GQ:PL    0/1:8,5:13:99:111,0,256
19    55481320    rs703465    G    C    436.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9882;MQ=58.32;MQ0=0;MQRankSum=0.913;QD=14.55;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    0/1:15,15:30:99:467,0,454
19    55481398    rs269912    G    A    652.58    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=1.813;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.4839;MQ=58.69;MQ0=0;MQRankSum=1.912;QD=11.65;ReadPosRankSum=1.945;SNPEFF_AMINO_ACID_CHANGE=A5;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55481367_55481663;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    0/1:31,25:56:99:683,0,821
19    55481669    rs269913    T    C    1128.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    1/1:0,38:38:93.26:1161,93,0
19    55485786    rs703468    G    A    908.64    PASS    AB=0.341;AC=1;AF=0.50;AN=2;BaseQRankSum=1.807;DB;DP=44;Dels=0.0;FS=2.675;HRun=2;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=1.188;QD=20.65;ReadPosRankSum=-1.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    0/1:15,29:44:99:939,0,471
19    55485899    rs2217659    G    A    1316.50    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.019;DB;DP=78;Dels=0.0;FS=3.855;HRun=2;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.99;QD=16.88;ReadPosRankSum=-1.34;SNPEFF_AMINO_ACID_CHANGE=K104;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55485868_55485912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    0/1:29,49:78:99:1346,0,855
19    55493095    rs17781858    C    G    441.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.626;DB;DP=26;Dels=0.0;FS=14.075;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.027;QD=16.98;ReadPosRankSum=1.006;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433772    GT:AD:DP:GQ:PL    0/1:13,13:26:99:472,0,370
19    55493441    rs55799796    C    T    1387.90    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.117;DB;DP=93;Dels=0.0;FS=4.199;HRun=0;HaplotypeScore=2.6594;MQ=59.3;MQ0=0;MQRankSum=2.64;QD=14.92;ReadPosRankSum=-0.547;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433772    GT:AD:DP:GQ:PL    0/1:47,46:93:99:1418,0,1556
19    55494188    rs3826883    C    T    551.98    MQFilter40    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=2.501;DB;DP=31;Dels=0.0;FS=3.771;HRun=0;HaplotypeScore=0.0;MQ=39.92;MQ0=0;MQRankSum=-0.206;QD=17.81;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=D350;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55493530_55495096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391721    GT:AD:DP:GQ:PL    0/1:10,21:31:99:582,0,224
19    55494651    rs34804158    A    G    745.84    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.02;DB;DP=65;Dels=0.0;FS=5.123;HRun=0;HaplotypeScore=3.7513;MQ=58.55;MQ0=0;MQRankSum=0.338;QD=11.47;ReadPosRankSum=1.0;SNPEFF_AMINO_ACID_CHANGE=T505A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55493530_55495096;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391721    GT:AD:DP:GQ:PL    0/1:34,30:65:99:776,0,1045
19    55494740    rs10412915    T    C    705.60    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.139;DB;DP=66;Dels=0.0;FS=4.919;HRun=0;HaplotypeScore=0.6651;MQ=58.97;MQ0=0;MQRankSum=2.285;QD=10.69;ReadPosRankSum=1.755;SNPEFF_AMINO_ACID_CHANGE=F534;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55493530_55495096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391721    GT:AD:DP:GQ:PL    0/1:37,28:66:99:736,0,1068
19    55494881    rs11672113    C    G    774.67    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.045;DB;DP=47;Dels=0.0;FS=12.934;HRun=0;HaplotypeScore=0.7887;MQ=59.41;MQ0=0;MQRankSum=1.572;QD=16.48;ReadPosRankSum=0.671;SNPEFF_AMINO_ACID_CHANGE=L581;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55493530_55495096;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391721    GT:AD:DP:GQ:PL    0/1:22,25:47:99:805,0,657
19    55495215    rs11672206    A    G    245.67    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.176;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.22;QD=16.38;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397169    GT:AD:DP:GQ:PL    0/1:7,8:15:99:276,0,235
19    55497506    rs71367132    C    T    158.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.237;DB;DP=15;Dels=0.0;FS=2.796;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=10.58;ReadPosRankSum=-1.945;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397169    GT:AD:DP:GQ:PL    0/1:9,6:15:99:189,0,331
19    55501216    rs1671223    T    G    152.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540005    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:185,15,0
19    55501316    rs1671224    G    A    624.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=31.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540005    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:658,51,0
19    55501348    rs35241109    C    CA    172.25    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=30;FS=6.117;HRun=16;HaplotypeScore=245.0679;IndelType=I;MQ=51.25;MQ0=0;MQRankSum=-0.424;QD=5.74;ReadPosRankSum=-1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540005    GT:AD:DP:GQ:PL    0/1:17,7:30:9.61:211,0,10
19    55501579    rs1654495    A    C    1083.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381637    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1117,84,0
19    55501834    rs1654496    C    A    772.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381637    GT:AD:DP:GQ:PL    1/1:0,25:25:60.19:806,60,0
19    55501866    rs12973968    G    C    1329.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381637    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1362,99,0
19    55508436    rs3786861    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543277    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    55508476    rs3786862    A    G    34.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=11.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543277    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:66,6,0
19    55511873    rs1671135    G    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
19    55511892    rs34750852    C    T    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
19    55511916    rs34671392    G    C    79.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
19    55511927    rs1560714    G    A    85.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263437    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    55512232    rs1043673    C    A    1536.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=A1028E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55512128_55512503;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391721    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1569,117,0
19    55512316    rs1043678    T    G    827.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540597    GT:AD:DP:GQ:PL    1/1:0,27:27:66.21:860,66,0
19    55512347    rs1043680    G    C    518.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=25.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540597    GT:AD:DP:GQ:PL    1/1:0,20:20:45.14:552,45,0
19    55512431    rs1043684    A    G    164.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540597    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
19    55525497    rs1671150    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_AMINO_ACID_CHANGE=F606L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55525073_55526533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    55525596    rs1654412    T    C    453.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.34;SNPEFF_AMINO_ACID_CHANGE=R573G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55525073_55526533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:486,39,0
19    55525894    rs1671151    G    A    1639.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=37.25;SNPEFF_AMINO_ACID_CHANGE=P473;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55525073_55526533;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1672,126,0
19    55526345    rs1671152    T    G    354.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.28;SNPEFF_AMINO_ACID_CHANGE=N304H;SNPEFF_CODON_CHANGE=Aac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55525073_55526533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333884    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:388,30,0
19    55526359    rs1654413    A    T    293.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.7;SNPEFF_AMINO_ACID_CHANGE=L299Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55525073_55526533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333884    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:327,24,0
19    55526373    rs2304166    G    C    315.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.26;SNPEFF_AMINO_ACID_CHANGE=P314A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55525073_55526533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,13:13:27.07:348,27,0
19    55527081    rs2304167    C    T    920.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.67;SNPEFF_AMINO_ACID_CHANGE=A231T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55527051_55527101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333884    GT:AD:DP:GQ:PL    1/1:0,30:30:69.23:953,69,0
19    55527189    rs1671153    G    T    326.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
19    55529933    rs1671192    A    G    886.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=58.27;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,27:27:72.21:920,72,0
19    55529936    rs2304168    A    G    927.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:961,75,0
19    55530035    rs1654416    C    T    1888.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5616;MQ=58.39;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=E219K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55530020_55530079;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333884    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1922,144,0
19    55536595    rs1613662    G    A    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_AMINO_ACID_CHANGE=P219S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55536586_55536639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
19    55538980    rs1654425    T    C    1510.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.24;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=S192;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55538946_55539230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1544,123,0
19    55539049    rs5030705    C    T    1553.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;DB;DP=45;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.9867;MQ=57.59;MQ0=0;MQRankSum=1.26;QD=34.53;ReadPosRankSum=1.102;SNPEFF_AMINO_ACID_CHANGE=T169;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55538946_55539230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:1,44:45:95.04:1587,95,0
19    55539061    rs892089    A    G    1499.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.79;MQ0=0;QD=30.6;SNPEFF_AMINO_ACID_CHANGE=F165;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55538946_55539230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1532,135,0
19    55539072    rs892090    T    G    1820.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.06;MQ0=0;QD=31.38;SNPEFF_AMINO_ACID_CHANGE=R162;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55538946_55539230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1853,156,0
19    55543404    rs11084384    G    T    208.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310373    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
19    55559740    rs1059211    G    A    946.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_AMINO_ACID_CHANGE=L134;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55559697_55559909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396247    GT:AD:DP:GQ:PL    1/1:0,31:31:72.22:979,72,0
19    55567838    rs3060075    T    TAATA    327.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=15.0658;IndelType=I;MQ=57.52;MQ0=0;QD=65.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291892    GT:AD:DP:GQ:PL    1/1:0,4:5:15.05:370,15,0
19    55570574    rs1654447    A    G    583.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=26.5;SNPEFF_AMINO_ACID_CHANGE=G45;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55570525_55570643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291892    GT:AD:DP:GQ:PL    1/1:0,22:22:48.14:616,48,0
19    55574412    rs1654456    G    T    54.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.88;MQ0=0;QD=13.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RDH13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396247    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:85,6,0
19    55589544    rs10411094    G    A    632.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.01;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201647    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:665,51,0
19    55589619    rs12984354    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201647    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    55589628    rs12984365    T    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201647    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
19    55590238    rs9783957    A    G    178.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=52.05;MQ0=0;QD=25.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201647    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:211,18,0
19    55590599    rs1671164    G    A    165.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201647    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
19    55597369    rs2290476    G    C    1070.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=28.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    1/1:0,37:37:87.25:1103,87,0
19    55603388    rs10410929    T    C    205.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.776;QD=13.71;ReadPosRankSum=-0.429;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPS8L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201647    GT:AD:DP:GQ:PL    0/1:5,10:15:99:236,0,151
19    55604709    rs11668120    C    T    194.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:227,18,0
19    55604714    rs11668118    A    G    156.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:189,15,0
19    55605434    .    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
19    55605558    .    C    CTTA    402.24    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=0;HaplotypeScore=70.7762;IndelType=I;MQ=28.22;MQ0=0;QD=57.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    1/1:0,6:7:18.06:444,18,0
19    55605579    .    G    A    146.55    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9494;MQ=29.0;MQ0=0;MQRankSum=0.572;QD=18.32;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    0/1:2,6:8:39.96:177,0,40
19    55605585    .    G    GC    222.83    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=4;HaplotypeScore=108.1618;IndelType=I;MQ=29.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    1/1:3,5:8:23.33:265,23,0
19    55605652    rs12983916    G    A    131.36    MQFilter40    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=1.344;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=34.26;MQ0=0;MQRankSum=-0.636;QD=8.21;ReadPosRankSum=0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    0/1:5,11:16:45.81:161,0,46
19    55605658    .    G    GC    329.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DP=17;FS=0.0;HRun=4;HaplotypeScore=177.0815;IndelType=I;MQ=38.93;MQ0=0;MQRankSum=-0.354;QD=18.29;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    0/1:6,12:17:94.05:368,0,94
19    55605694    rs3803898    A    G    932.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.31;MQ0=0;QD=27.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R12C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263433    GT:AD:DP:GQ:PL    1/1:0,34:34:75.24:966,75,0
19    55644325    rs890868    A    C    365.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=28.11;SNPEFF_AMINO_ACID_CHANGE=R179;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55644200_55644328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537693    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:398,30,0
19    55652176    .    A    AATAATC    431    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DP=13;FS=0.0;HRun=0;HaplotypeScore=79.52;IndelType=I;MQ=57.06;MQ0=0;MQRankSum=0.0;QD=33.15;ReadPosRankSum=-0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291901    GT:AD:DP:GQ:PL    0/1:5,7:13:99:470,0,176
19    55657069    rs78156871    T    A    516.06    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=26;Dels=0.0;FS=3.736;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.208;QD=19.85;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291901    GT:AD:DP:GQ:PL    0/1:11,15:26:99:546,0,370
19    55658167    rs11550310    G    C    51.37    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=12.84;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344887    GT:AD:DP:GQ:PL    0/1:1,3:4:21.41:81,0,21
19    55658387    rs112562759    T    C    142.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=11.86;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=E12G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55658376_55658389;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291901    GT:AD:DP:GQ:PL    0/1:4,8:12:99:172,0,123
19    55665584    rs7252610    A    C    869.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301249    GT:AD:DP:GQ:PL    1/1:0,30:30:69.21:902,69,0
19    55665689    rs2288529    C    G    77.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=12.84;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301249    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,107
19    55667500    rs2288528    A    T    179.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.467;QD=14.96;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301249    GT:AD:DP:GQ:PL    0/1:6,6:12:99:210,0,211
19    55668509    rs3729836    A    T    155.29    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=17.25;ReadPosRankSum=1.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301249    GT:AD:DP:GQ:PL    0/1:2,7:9:57.67:185,0,58
19    55668805    rs11671293    T    C    355.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.202;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.895;QD=14.8;ReadPosRankSum=0.029;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301249    GT:AD:DP:GQ:PL    0/1:12,12:24:99:385,0,392
19    55670825    rs28377509    T    C    2061.07    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=117;Dels=0.0;FS=6.623;HRun=0;HaplotypeScore=1.7719;MQ=59.64;MQ0=0;MQRankSum=1.107;QD=17.62;ReadPosRankSum=-2.082;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526003    GT:AD:DP:GQ:PL    0/1:49,68:117:99:2091,0,1511
19    55670989    rs60176657    G    A    1666.55    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.687;DB;DP=90;Dels=0.0;FS=1.224;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=1.328;QD=18.52;ReadPosRankSum=-0.878;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526003    GT:AD:DP:GQ:PL    0/1:38,52:90:99:1697,0,1170
19    55671337    rs890872    C    T    2553.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.78;MQ0=0;QD=34.51;SNPEFF_AMINO_ACID_CHANGE=D311N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55671267_55671381;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455045    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2587,199,0
19    55671973    rs150324242    AGTCCCTGGCTTACCTGTTGTT    A    2333.27    PASS    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=7.103;DB;DP=116;FS=0.0;HRun=0;HaplotypeScore=1815.6392;IndelType=D;MQ=56.54;MQ0=0;MQRankSum=-1.831;QD=20.11;ReadPosRankSum=0.857;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526003    GT:AD:DP:GQ:PL    0/1:93,23:116:99:2372,0,19133
19    55672055    rs890871    A    G    336.70    PASS    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.009;DB;DP=106;Dels=0.0;FS=3.777;HRun=2;HaplotypeScore=1.81;MQ=57.43;MQ0=0;MQRankSum=-2.382;QD=3.18;ReadPosRankSum=0.291;SNPEFF_AMINO_ACID_CHANGE=L280P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55672008_55672143;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455045    GT:AD:DP:GQ:PL    0/1:80,26:106:99:367,0,2388
19    55672601    rs74380007    C    A    116.89    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=19.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526003    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:147,0,27
19    55677523    rs3848619    C    T    90.79    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=10.09;ReadPosRankSum=1.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C19orf51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301249    GT:AD:DP:GQ:PL    0/1:5,4:9:99:121,0,179
19    55686083    rs78345542    A    C    752.28    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=3.012;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=60.0;MQ0=0;MQRankSum=-0.614;QD=18.81;ReadPosRankSum=-0.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:17,23:40:99:782,0,491
19    55686138    rs2071574    A    G    572.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.924;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.23;MQ0=0;MQRankSum=0.025;QD=19.09;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:10,20:30:99:603,0,252
19    55686148    rs75551131    T    G    674.20    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.3;MQ0=0;MQRankSum=-0.762;QD=20.43;ReadPosRankSum=-1.066;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:10,22:33:99:704,0,273
19    55686230    rs2071572    C    T    791.42    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.18;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.767;QD=15.22;ReadPosRankSum=1.884;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:23,29:52:99:821,0,591
19    55686380    rs12459917    G    A    445.86    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=33;Dels=0.0;FS=3.581;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.171;QD=13.51;ReadPosRankSum=1.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:16,17:33:99:476,0,466
19    55686414    rs12459930    G    T    389.55    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.786;DB;DP=24;Dels=0.0;FS=6.214;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.439;QD=16.23;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:10,14:24:99:420,0,332
19    55686417    rs12462211    T    C    395.80    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=24;Dels=0.0;FS=5.969;HRun=2;HaplotypeScore=1.8874;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=16.49;ReadPosRankSum=-0.556;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:10,14:24:99:426,0,310
19    55686495    rs12459887    A    G    140.58    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=20.08;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:2,5:7:55.92:171,0,56
19    55686523    rs12459921    C    T    39.26    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-1.38;QD=5.61;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:2,5:7:60.19:69,0,60
19    55686705    rs1128712    G    T    206.80    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.05;MQ0=0;MQRankSum=-0.289;QD=17.23;ReadPosRankSum=0.825;SNPEFF_AMINO_ACID_CHANGE=V178;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55686540_55686707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543844    GT:AD:DP:GQ:PL    0/1:4,8:12:62.46:237,0,62
19    55686786    rs75800164    A    G    111.29    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=15.9;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:3,4:7:92.17:141,0,92
19    55686986    rs12460445    C    T    261.72    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.01;DB;DP=17;Dels=0.0;FS=6.32;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.433;QD=15.4;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:9,8:17:99:292,0,204
19    55687352    rs77500505    T    A    2002.23    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.516;DB;DP=176;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.25;MQ0=0;MQRankSum=1.115;QD=11.38;ReadPosRankSum=-0.281;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:95,80:176:99:2032,0,2948
19    55687497    rs79386303    A    G    670.13    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.39;DB;DP=50;Dels=0.0;FS=1.43;HRun=2;HaplotypeScore=0.7887;MQ=59.63;MQ0=0;MQRankSum=0.89;QD=13.4;ReadPosRankSum=-0.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:26,24:50:99:700,0,831
19    55693015    rs17458    C    T    563.42    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.247;DB;DP=51;Dels=0.0;FS=2.879;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-2.083;QD=11.05;ReadPosRankSum=-0.4;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354308    GT:AD:DP:GQ:PL    0/1:32,19:51:99:593,0,983
19    55693123    rs2288420    T    C    1206.36    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=3.171;DB;DP=94;Dels=0.0;FS=0.779;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=-0.78;QD=12.83;ReadPosRankSum=1.09;SNPEFF_AMINO_ACID_CHANGE=*1116;SNPEFF_CODON_CHANGE=tAa/tGa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_19_55692618_55693271;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376350    GT:AD:DP:GQ:PL    0/1:49,45:94:99:1236,0,1479
19    55693244    rs2288419    T    C    818.10    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=59;Dels=0.0;FS=1.029;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.567;QD=13.87;ReadPosRankSum=1.828;SNPEFF_AMINO_ACID_CHANGE=I1076V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55692618_55693271;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376350    GT:AD:DP:GQ:PL    0/1:30,29:59:99:848,0,903
19    55693534    rs113536849    G    T    482.31    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.474;DB;DP=29;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.461;QD=16.63;ReadPosRankSum=0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:14,15:29:99:512,0,383
19    55693751    rs3760870    G    C    32.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
19    55699454    rs890870    T    C    1062.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_AMINO_ACID_CHANGE=K645E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55699446_55699536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    1/1:0,33:33:81.27:1095,81,0
19    55699575    rs3803905    T    C    342.72    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.36;MQ0=0;MQRankSum=0.154;QD=14.9;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:11,12:23:99:373,0,353
19    55699646    rs3803904    C    T    132.73    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=55.41;MQ0=0;MQRankSum=0.244;QD=11.06;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:7,5:12:99:163,0,214
19    55702910    rs2288523    C    A    2678.48    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.471;DB;DP=197;Dels=0.0;FS=2.608;HRun=0;HaplotypeScore=3.414;MQ=59.4;MQ0=0;MQRankSum=0.695;QD=13.53;ReadPosRankSum=-1.003;SNPEFF_AMINO_ACID_CHANGE=K603N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55702869_55702916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:102,95:197:99:2708,0,3107
19    55703237    rs11394932    C    CG    208.64    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.001;DB;DP=17;FS=0.0;HRun=2;HaplotypeScore=45.4279;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=-0.732;QD=12.27;ReadPosRankSum=-2.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:10,7:17:99:248,0,320
19    55708557    rs2288521    A    G    573.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.079;DB;DP=36;Dels=0.0;FS=1.399;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.585;QD=15.92;ReadPosRankSum=1.566;SNPEFF_AMINO_ACID_CHANGE=L462;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55708485_55708784;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:18,18:36:99:603,0,619
19    55710021    rs2288518    A    G    197.34    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.708;QD=7.31;ReadPosRankSum=-0.142;SNPEFF_AMINO_ACID_CHANGE=T382;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55710011_55710280;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:17,10:27:99:227,0,493
19    55710348    rs17782295    C    T    114.19    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=16.31;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:3,4:7:78:144,0,78
19    55713535    rs2288515    G    A    1134.88    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.091;DB;DP=80;Dels=0.0;FS=1.926;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.161;QD=14.19;ReadPosRankSum=-0.43;SNPEFF_AMINO_ACID_CHANGE=H170Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55713424_55713690;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:42,38:80:99:1165,0,1259
19    55713739    rs12462430    A    G    164.16    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.847;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=10.26;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:9,7:16:99:194,0,315
19    55715090    rs12608558    A    G    547.22    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.628;DB;DP=37;Dels=0.0;FS=4.688;HRun=0;HaplotypeScore=0.734;MQ=59.38;MQ0=0;MQRankSum=1.869;QD=14.79;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263434    GT:AD:DP:GQ:PL    0/1:19,18:37:99:577,0,654
19    55715319    rs9304763    C    G    355.48    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.533;DB;DP=60;Dels=0.0;FS=4.511;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.061;QD=5.92;ReadPosRankSum=0.339;SNPEFF_AMINO_ACID_CHANGE=S239;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55715150_55715416;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376350    GT:AD:DP:GQ:PL    0/1:45,15:60:99:385,0,1354
19    55738634    rs4644955    T    C    88.80    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=12.69;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=H199R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55738002_55738931;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM86B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327042    GT:AD:DP:GQ:PL    0/1:3,4:7:67.97:119,0,68
19    55739515    rs4255895    T    C    170.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=14.18;ReadPosRankSum=1.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412770    GT:AD:DP:GQ:PL    0/1:6,6:12:99:200,0,212
19    55739689    rs10413828    G    A    182.47    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.683;QD=20.27;ReadPosRankSum=-1.683;SNPEFF_AMINO_ACID_CHANGE=P56;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55739559_55739805;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM86B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327042    GT:AD:DP:GQ:PL    0/1:3,6:9:46.24:212,0,46
19    55741961    rs28678477    G    C    230.76    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.865;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9992;MQ=58.55;MQ0=0;MQRankSum=-0.193;QD=14.42;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412770    GT:AD:DP:GQ:PL    0/1:6,10:16:99:261,0,179
19    55742071    rs116604313    G    A    73.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.95;MQ0=0;MQRankSum=-0.72;QD=12.19;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412770    GT:AD:DP:GQ:PL    0/1:2,4:6:69.41:103,0,69
19    55751123    rs8104509    G    A    398.80    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=2.161;DB;DP=17;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.369;QD=23.46;ReadPosRankSum=-0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412770    GT:AD:DP:GQ:PL    0/1:5,12:17:99:429,0,124
19    55790886    rs3040014    A    AGCCGCCGCC    692.73    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.042;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=263.2541;IndelType=I;MQ=51.34;MQ0=0;MQRankSum=-2.578;QD=20.99;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=G30GAAA;SNPEFF_CODON_CHANGE=ggc/ggGGCGGCGGCc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_19_55790767_55791070;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255631    GT:AD:DP:GQ:PL    0/1:27,5:33:99:732,0,964
19    55813248    rs1172819    G    A    85.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=12.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309383    GT:AD:DP:GQ:PL    1/1:0,7:7:9.03:118,9,0
19    55815894    rs1172820    T    C    253.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309383    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:286,21,0
19    55816678    rs1172821    C    T    851.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRSK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309383    GT:AD:DP:GQ:PL    1/1:0,28:28:75.21:884,75,0
19    55819845    rs1172822    C    T    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326652    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
19    55824332    rs7246479    T    G    341.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_AMINO_ACID_CHANGE=L199F;SNPEFF_CODON_CHANGE=ttA/ttC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55824169_55824423;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326652    GT:AD:DP:GQ:PL    1/1:0,14:14:30.08:374,30,0
19    55831576    rs897794    A    C    1367.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.6651;MQ=56.94;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326652    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1400,123,0
19    55831577    rs897795    A    C    1256.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.94;MQ0=0;QD=23.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326652    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1289,117,0
19    55831589    rs897796    A    G    1564.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=31.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326652    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1598,123,0
19    55831723    rs897797    T    G    545.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.25;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326652    GT:AD:DP:GQ:PL    1/1:0,16:16:48.12:578,48,0
19    55832427    rs10412726    T    G    579.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438693    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:612,45,0
19    55832555    rs10411773    G    A    105.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326652    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:138,12,0
19    55832567    rs1109368    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM150B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326652    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    55856083    rs11084395    T    C    774.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.71;SNPEFF_AMINO_ACID_CHANGE=D65;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55855999_55856247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUV420H2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402499    GT:AD:DP:GQ:PL    1/1:0,29:29:63.17:808,63,0
19    55856211    rs10405231    C    T    466.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_AMINO_ACID_CHANGE=T39;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55855999_55856561;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUV420H2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539076    GT:AD:DP:GQ:PL    1/1:0,16:16:39.10:499,39,0
19    55879872    rs1126757    C    T    281.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.77;SNPEFF_AMINO_ACID_CHANGE=A82;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55879851_55879937;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264563    GT:AD:DP:GQ:PL    1/1:0,15:15:24.08:315,24,0
19    55913038    rs7608    C    T    262.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.31;MQ0=0;QD=18.73;SNPEFF_AMINO_ACID_CHANGE=A145;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55912652_55913130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2S;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000264552    GT:AD:DP:GQ:PL    1/1:0,14:14:24.07:295,24,0
19    55966346    rs2277959    C    T    733.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.32;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085068    GT:AD:DP:GQ:PL    1/1:0,25:25:60.18:767,60,0
19    55966971    rs12462602    C    T    415.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085068    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:448,33,0
19    55993260    rs34864744    A    G    234.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.94;MQ0=0;QD=29.34;SNPEFF_AMINO_ACID_CHANGE=T230A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55992568_55995854;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF628;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391718    GT:AD:DP:GQ:PL    1/1:0,7:8:21.07:268,21,0
19    55993876    rs10423355    T    C    105.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.13;SNPEFF_AMINO_ACID_CHANGE=V435A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55992568_55995854;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF628;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391718    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:138,12,0
19    55994240    rs12981044    C    T    269.94    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.298;DB;DP=29;Dels=0.0;FS=1.55;HRun=0;HaplotypeScore=0.5784;MQ=59.36;MQ0=0;MQRankSum=0.115;QD=9.31;ReadPosRankSum=2.225;SNPEFF_AMINO_ACID_CHANGE=H556;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55992568_55995854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF628;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391718    GT:AD:DP:GQ:PL    0/1:19,10:29:99:300,0,645
19    55995272    rs11550705    G    A    271.21    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.387;QD=12.91;ReadPosRankSum=0.669;SNPEFF_AMINO_ACID_CHANGE=P900;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55992568_55995854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF628;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391718    GT:AD:DP:GQ:PL    0/1:10,11:21:99:301,0,323
19    55998262    rs77664073    C    T    41.32    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=10.33;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=A187V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_55997775_55998935;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT14;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000205194    GT:AD:DP:GQ:PL    0/1:1,3:4:31.62:71,0,32
19    55999993    rs4405662    A    G    101.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205194    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:134,12,0
19    56001419    rs10716127    CG    C    167.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=21.0886;IndelType=D;MQ=57.52;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAT14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000205194    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
19    56009215    rs7254234    G    A    111.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DB;DP=9;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.248;QD=12.44;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    0/1:3,6:9:99:142,0,104
19    56011460    rs4801713    C    T    805.01    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=2.056;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7329;MQ=58.99;MQ0=0;MQRankSum=0.591;QD=12.2;ReadPosRankSum=-1.734;SNPEFF_AMINO_ACID_CHANGE=T661;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56011183_56011779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    0/1:35,31:66:99:835,0,1098
19    56012590    rs11669496    G    A    111.91    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.38;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:142,0,27
19    56012597    rs11669422    A    G    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:73,6,0
19    56024519    rs671542    T    C    705.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=29.41;SNPEFF_AMINO_ACID_CHANGE=L976P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56024378_56024539;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    1/1:0,24:24:60.17:739,60,0
19    56024563    rs514574    G    C    607.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:640,48,0
19    56024599    rs671152    A    G    544.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:577,42,0
19    56029616    .    C    CCCA    1043.07    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.535;DP=38;FS=2.181;HRun=0;HaplotypeScore=206.4694;IndelType=I;MQ=56.85;MQ0=0;MQRankSum=-0.444;QD=27.45;ReadPosRankSum=-1.268;SNPEFF_AMINO_ACID_CHANGE=P1325PT;SNPEFF_CODON_CHANGE=ccc/cCCAcc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_19_56028591_56030466;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    0/1:20,18:38:99:1082,0,724
19    56030428    rs10217    C    A    203.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.734;MQ=58.05;MQ0=0;MQRankSum=0.0;QD=16.97;ReadPosRankSum=1.468;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSC5D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389623    GT:AD:DP:GQ:PL    0/1:4,8:12:93.14:234,0,93
19    56041046    rs59876483    G    A    77.62    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.94;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344158    GT:AD:DP:GQ:PL    0/1:2,4:6:69.83:108,0,70
19    56041047    rs59914207    C    A    77.62    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=12.94;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344158    GT:AD:DP:GQ:PL    0/1:2,4:6:69.41:108,0,69
19    56041255    rs620251    C    G    158.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.61;SNPEFF_AMINO_ACID_CHANGE=A298P;SNPEFF_CODON_CHANGE=Gcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56041100_56041690;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344158    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:191,15,0
19    56047448    rs310453    A    G    576.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=C72R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56047409_56047661;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBK2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344158    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:610,48,0
19    56052337    rs147187648    A    AC    248.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=3;HaplotypeScore=12.7203;IndelType=I;MQ=61.53;MQ0=0;QD=35.45;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_56052338_56052892;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008735.15;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000420723    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
19    56052770    rs654439    C    T    171.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_AMINO_ACID_CHANGE=P159;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56052338_56052892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008735.15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000420723    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
19    56055436    rs694398    A    G    183.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008735.15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420723    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:217,18,0
19    56089353    rs2292812    C    T    83.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.88;SNPEFF_AMINO_ACID_CHANGE=K551;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56088893_56091007;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF579;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000325421    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
19    56104136    rs7247236    T    C    138.56    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.276;DB;DP=18;Dels=0.0;FS=11.429;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=1.406;QD=7.7;ReadPosRankSum=-0.663;SNPEFF_AMINO_ACID_CHANGE=T391A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56102738_56105012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FIZ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221665    GT:AD:DP:GQ:PL    0/1:11,7:18:99:169,0,187
19    56113258    .    T    C    64.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.05;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF524;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301073    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:94,0,29
19    56134038    rs908668    C    T    93.95    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=10.44;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF784;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325351    GT:AD:DP:GQ:PL    0/1:5,4:9:99:124,0,130
19    56156447    rs11084406    A    G    527.38    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.616;DB;DP=47;Dels=0.0;FS=2.893;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=11.22;ReadPosRankSum=-0.869;SNPEFF_AMINO_ACID_CHANGE=E170;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56155919_56156988;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF581;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270451    GT:AD:DP:GQ:PL    0/1:25,22:47:99:557,0,679
19    56160399    rs7246799    T    C    794.14    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6483;MQ=59.65;MQ0=0;MQRankSum=1.208;QD=12.03;ReadPosRankSum=-0.614;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF581;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270451    GT:AD:DP:GQ:PL    0/1:36,30:66:99:824,0,1005
19    56162776    rs2287791    C    T    127.19    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=14.13;ReadPosRankSum=0.876;SNPEFF_AMINO_ACID_CHANGE=S147;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56162649_56162861;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC106;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308964    GT:AD:DP:GQ:PL    0/1:4,5:9:99:157,0,124
19    56163704    rs73062531    C    T    114.16    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.635;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=9.51;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC106;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308964    GT:AD:DP:GQ:PL    0/1:7,5:12:99:144,0,222
19    56170771    rs537728    G    A    59.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:91,9,0
19    56171778    rs507498    A    C    137.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.47;QD=13.74;ReadPosRankSum=0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:5,5:10:99:167,0,170
19    56171811    .    G    T    305.25    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.28;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.95;MQ0=0;MQRankSum=1.528;QD=16.07;ReadPosRankSum=-1.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:8,11:19:99:335,0,245
19    56175149    rs310444    G    A    1051.46    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.34;MQ0=0;MQRankSum=-0.35;QD=16.69;ReadPosRankSum=1.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:27,36:63:99:1081,0,759
19    56175245    rs310443    C    A    89.31    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.92;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:4,5:9:99:119,0,103
19    56180281    rs679577    T    C    82.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.148;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.103;QD=7.46;ReadPosRankSum=-2.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:5,5:11:99:112,0,172
19    56180307    rs630491    C    T    35.42    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8332;MQ=57.05;MQ0=0;MQRankSum=1.067;QD=4.43;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:6,2:8:65.41:65,0,129
19    56180732    rs681804    T    C    211.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.091;DB;DP=21;Dels=0.0;FS=4.359;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=10.06;ReadPosRankSum=-0.249;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:12,9:21:99:241,0,347
19    56180968    rs617073    C    T    211.38    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=13;Dels=0.0;FS=11.228;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.991;QD=16.26;ReadPosRankSum=0.212;SNPEFF_AMINO_ACID_CHANGE=D397;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56180810_56181058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450554    GT:AD:DP:GQ:PL    0/1:5,8:13:99:241,0,168
19    56181111    rs113060149    C    T    120.36    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.221;QD=15.04;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:3,5:8:64.49:150,0,64
19    56185250    rs664684    G    A    746.35    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.24;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.51;MQ0=0;MQRankSum=2.491;QD=15.88;ReadPosRankSum=-0.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:21,25:46:99:776,0,653
19    56190435    rs8100143    A    T    72.87    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.22;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U2AF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308924    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:103,0,29
19    56196092    rs113266009    A    G    794.06    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.736;DB;DP=74;Dels=0.0;FS=2.161;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;MQRankSum=-1.369;QD=10.73;ReadPosRankSum=1.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085079    GT:AD:DP:GQ:PL    0/1:43,31:74:99:824,0,1338
19    56197061    rs112263634    A    G    75.06    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.77;ReadPosRankSum=-1.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085079    GT:AD:DP:GQ:PL    0/1:9,4:13:99:105,0,225
19    56201136    rs112928863    T    C    68.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.35;ReadPosRankSum=-1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085079    GT:AD:DP:GQ:PL    0/1:3,3:6:98.10:98,0,103
19    56203985    rs66906879    A    G    49.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=4.9;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000085079    GT:AD:DP:GQ:PL    0/1:5,5:10:79:79,0,147
19    56206137    rs11545669    G    C    208.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=2.398;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.599;QD=17.36;ReadPosRankSum=-1.134;SNPEFF_AMINO_ACID_CHANGE=G397A;SNPEFF_CODON_CHANGE=gGg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56206092_56206349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544375    GT:AD:DP:GQ:PL    0/1:4,8:12:81.48:238,0,81
19    56220485    rs75752156    C    G    322.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.964;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=16.1;ReadPosRankSum=-0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333452    GT:AD:DP:GQ:PL    0/1:8,12:20:99:352,0,255
19    56220504    rs73062405    T    C    170.42    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=13.11;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333452    GT:AD:DP:GQ:PL    0/1:7,6:13:99:200,0,240
19    56222998    rs28527338    C    T    81.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.26;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332836    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:111,0,26
19    56228398    .    TC    T    61.57    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=12;FS=0.0;HRun=1;HaplotypeScore=173.4872;IndelType=D;MQ=36.07;MQ0=0;MQRankSum=-1.835;QD=5.13;ReadPosRankSum=-2.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332836    GT:AD:DP:GQ:PL    0/1:7,5:12:35.41:101,0,35
19    56241265    rs193384    A    G    2394.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.27;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=L642;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56241197_56241358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332836    GT:AD:DP:GQ:PL    1/1:0,76:76:99:2427,199,0
19    56249445    rs755804    A    G    7794.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.984;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8603;MQ=59.46;MQ0=0;MQRankSum=-0.392;QD=31.18;ReadPosRankSum=1.004;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332836    GT:AD:DP:GQ:PL    1/1:4,246:250:99:7795,546,0
19    56273136    rs59333538    T    C    63.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=10.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434937    GT:AD:DP:GQ:PL    1/1:0,6:6:9:95,9,0
19    56273293    rs2019946    G    A    43.09    MQFilter40;QDFilter2    AB=0.805;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=82;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=12.21;MQ0=71;MQRankSum=-0.715;QD=0.53;ReadPosRankSum=-0.382;SNPEFF_AMINO_ACID_CHANGE=D43N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56273158_56273452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434937    GT:AD:DP:GQ:PL    0/1:66,16:82:73.08:73,0,262
19    56273868    .    G    A    161.74    MQFilter40    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DP=62;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=2.5314;MQ=17.12;MQ0=10;MQRankSum=0.01;QD=2.61;ReadPosRankSum=-1.645;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434937    GT:AD:DP:GQ:PL    0/1:33,29:62:99:192,0,325
19    56274086    rs138079370    G    A    223.48    MQFilter40;QDFilter2    AB=0.443;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.476;DB;DP=128;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2003;MQ=15.88;MQ0=34;MQRankSum=-0.677;QD=1.75;ReadPosRankSum=-0.094;SNPEFF_AMINO_ACID_CHANGE=A137T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56273964_56274541;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL4A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434937    GT:AD:DP:GQ:PL    0/1:54,68:128:99:253,0,475
19    56274460    .    A    G    2052.15    MQFilter40    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=0.063;DP=158;Dels=0.0;FS=11.854;HRun=1;HaplotypeScore=2.96;MQ=32.74;MQ0=31;MQRankSum=3.069;QD=12.99;ReadPosRankSum=1.613;SNPEFF_AMINO_ACID_CHANGE=Q261;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56273964_56274541;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434937    GT:AD:DP:GQ:PL    0/1:67,90:158:99:2082,0,793
19    56283297    .    G    A    310.77    MQFilter40    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.689;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.48;MQ0=64;MQRankSum=1.879;QD=2.77;ReadPosRankSum=-1.299;SNPEFF_AMINO_ACID_CHANGE=D43N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56283162_56283456;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2611O12.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341750    GT:AD:DP:GQ:PL    0/1:90,22:112:99:341,0,1095
19    56283664    rs7260322    C    G    48.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2611O12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341750    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    56283680    rs7245975    T    C    48.77    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2611O12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341750    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
19    56283978    rs116977548    C    G    354.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.85;MQ0=2;QD=25.33;SNPEFF_AMINO_ACID_CHANGE=T99;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56283968_56284545;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2611O12.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341750    GT:AD:DP:GQ:PL    1/1:0,14:14:36.08:388,36,0
19    56284090    .    G    A    511.48    MQFilter40    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.547;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=20.48;MQ0=62;MQRankSum=0.066;QD=4.12;ReadPosRankSum=-0.125;SNPEFF_AMINO_ACID_CHANGE=A137T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56283968_56284545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2611O12.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341750    GT:AD:DP:GQ:PL    0/1:71,52:124:99:541,0,946
19    56284396    rs141642534    A    T    1163.96    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.9;MQ0=33;MQRankSum=1.639;QD=16.63;ReadPosRankSum=-0.609;SNPEFF_AMINO_ACID_CHANGE=N239Y;SNPEFF_CODON_CHANGE=Aac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56283968_56284545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2611O12.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341750    GT:AD:DP:GQ:PL    1/1:1,69:70:99:1197,108,0
19    56297249    rs59238812    C    G    1290.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    1/1:0,39:39:96.32:1323,96,0
19    56307583    rs2616940    A    G    2129.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.23;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=C681;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56307446_56307616;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2163,162,0
19    56307723    rs10422937    T    C    118.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:151,12,0
19    56321414    rs299163    C    A    1101.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_AMINO_ACID_CHANGE=A188S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56320135_56321704;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1134,84,0
19    56321517    rs7249635    T    C    332.95    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.469;QD=15.13;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=G153;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56320135_56321704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    0/1:9,13:22:99:363,0,317
19    56329065    rs6509961    C    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
19    56329076    rs6509962    T    G    36.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=12.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
19    56329186    rs10632108    G    GGA    768.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=226.6975;IndelType=I;MQ=39.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    1/1:6,9:20:59.87:810,60,0
19    56329334    rs8113630    G    C    591.45    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.455;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5315;MQ=55.32;MQ0=0;MQRankSum=0.397;QD=12.86;ReadPosRankSum=-1.125;SNPEFF_AMINO_ACID_CHANGE=L69;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56329270_56329602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360133    GT:AD:DP:GQ:PL    0/1:25,21:46:99:621,0,726
19    56368948    rs435148    C    T    249.34    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.696;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.696;QD=16.62;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    0/1:7,8:15:99:279,0,171
19    56369189    rs441827    G    A    834.45    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=76;Dels=0.0;FS=4.552;HRun=2;HaplotypeScore=0.8321;MQ=58.84;MQ0=0;MQRankSum=1.152;QD=10.98;ReadPosRankSum=-1.089;SNPEFF_AMINO_ACID_CHANGE=A144T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56369040_56370615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    0/1:45,31:76:99:864,0,1407
19    56369215    rs395503    C    T    1072.92    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.911;DB;DP=84;Dels=0.0;FS=4.276;HRun=1;HaplotypeScore=0.7887;MQ=58.95;MQ0=0;MQRankSum=2.116;QD=12.77;ReadPosRankSum=0.257;SNPEFF_AMINO_ACID_CHANGE=I152;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56369040_56370615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    0/1:47,37:84:99:1103,0,1433
19    56369314    rs16986718    G    A    1044.15    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=3.662;DB;DP=78;Dels=0.0;FS=3.064;HRun=0;HaplotypeScore=1.9815;MQ=60.0;MQ0=0;MQRankSum=0.308;QD=13.39;ReadPosRankSum=1.039;SNPEFF_AMINO_ACID_CHANGE=T185;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56369040_56370615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    0/1:43,35:78:99:1074,0,1263
19    56369593    rs421810    T    C    1251.54    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.184;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.36;MQ0=0;MQRankSum=-0.825;QD=17.38;ReadPosRankSum=-0.54;SNPEFF_AMINO_ACID_CHANGE=A278;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56369040_56370615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    0/1:31,41:72:99:1282,0,998
19    56370166    rs379327    C    T    1247.91    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=73;Dels=0.0;FS=3.175;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-1.557;QD=17.09;ReadPosRankSum=0.006;SNPEFF_AMINO_ACID_CHANGE=H469;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56369040_56370615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    0/1:31,42:73:99:1278,0,1025
19    56372613    rs4801634    A    C    128.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
19    56372705    rs4801635    C    T    777.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    1/1:0,25:25:60.18:811,60,0
19    56373578    rs10853880    C    G    536.07    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.87;MQ0=3;MQRankSum=1.897;QD=25.53;ReadPosRankSum=-2.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    0/1:5,16:21:28.04:566,0,28
19    56373608    rs10853881    A    G    172.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.24;MQ0=3;QD=21.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:206,15,0
19    56388262    rs16986758    C    T    618    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.536;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=0.254;QD=12.61;ReadPosRankSum=-0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    0/1:29,20:49:99:648,0,1026
19    56390237    rs302453    A    T    544.68    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=0.823;DB;DP=27;Dels=0.0;FS=1.576;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.664;QD=20.17;ReadPosRankSum=-1.142;SNPEFF_AMINO_ACID_CHANGE=Q869L;SNPEFF_CODON_CHANGE=cAg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56390160_56390330;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346986    GT:AD:DP:GQ:PL    0/1:8,19:27:99:575,0,190
19    56392875    rs302456    T    G    319.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.302;DB;DP=28;Dels=0.0;FS=3.556;HRun=0;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.441;QD=11.41;ReadPosRankSum=-1.277;SNPEFF_AMINO_ACID_CHANGE=L913;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56392836_56393218;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346986    GT:AD:DP:GQ:PL    0/1:16,12:28:99:349,0,505
19    56393051    rs302457    T    C    194.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301295    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
19    56409930    rs302825    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    56410010    rs302826    T    C    644.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:678,51,0
19    56410340    rs302828    T    G    1183.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1216,90,0
19    56413532    rs7258847    G    A    445.09    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.244;DB;DP=28;Dels=0.0;FS=1.69;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.797;QD=15.9;ReadPosRankSum=-2.165;SNPEFF_AMINO_ACID_CHANGE=H886;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56413401_56413571;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    0/1:13,15:28:99:475,0,408
19    56413583    rs302835    A    G    636.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:669,51,0
19    56413689    rs302836    A    T    171.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
19    56421775    rs11670284    C    T    99.16    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.02;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,175
19    56423668    rs304001    G    A    526.83    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=36;Dels=0.0;FS=2.987;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.398;QD=14.63;ReadPosRankSum=1.449;SNPEFF_AMINO_ACID_CHANGE=I505;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56423072_56424659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    0/1:20,16:36:99:557,0,601
19    56423692    rs304000    C    T    696.90    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.758;DB;DP=41;Dels=0.0;FS=4.575;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.054;QD=17.0;ReadPosRankSum=0.108;SNPEFF_AMINO_ACID_CHANGE=T497;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56423072_56424659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    0/1:19,22:41:99:727,0,595
19    56423728    rs303999    A    G    616.90    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.527;DB;DP=44;Dels=0.0;FS=2.696;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.117;QD=14.02;ReadPosRankSum=1.175;SNPEFF_AMINO_ACID_CHANGE=S485;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56423072_56424659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    0/1:23,21:44:99:647,0,668
19    56423893    rs303998    G    A    681.32    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=1.329;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5779;MQ=59.24;MQ0=0;MQRankSum=0.455;QD=12.39;ReadPosRankSum=0.56;SNPEFF_AMINO_ACID_CHANGE=T430;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56423072_56424659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    0/1:32,23:55:99:711,0,930
19    56424443    rs303997    T    C    934.12    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.593;DB;DP=64;Dels=0.0;FS=0.988;HRun=2;HaplotypeScore=1.9996;MQ=58.91;MQ0=0;MQRankSum=-2.052;QD=14.6;ReadPosRankSum=1.741;SNPEFF_AMINO_ACID_CHANGE=Q247R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56423072_56424659;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    0/1:31,33:64:99:964,0,804
19    56424532    rs731338    G    A    976.26    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.119;DB;DP=83;Dels=0.0;FS=3.03;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.312;QD=11.76;ReadPosRankSum=0.524;SNPEFF_AMINO_ACID_CHANGE=R217;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56423072_56424659;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342929    GT:AD:DP:GQ:PL    0/1:48,35:83:99:1006,0,1542
19    56459061    rs306508    T    C    260.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:293,21,0
19    56459342    rs306507    C    T    4147.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=36.38;SNPEFF_AMINO_ACID_CHANGE=P25L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56459198_56459635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,114:114:99:4147,307,0
19    56459458    rs61195059    C    T    224.81    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=22;Dels=0.0;FS=1.792;HRun=1;HaplotypeScore=0.0;MQ=57.2;MQ0=0;MQRankSum=-0.334;QD=10.22;ReadPosRankSum=1.002;SNPEFF_AMINO_ACID_CHANGE=L64F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56459198_56459635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:13,9:22:99:255,0,441
19    56459614    rs306506    G    C    1031.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=V116L;SNPEFF_CODON_CHANGE=Gta/Cta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56459198_56459635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,33:33:78.26:1065,78,0
19    56459703    rs1436077    A    G    266.74    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.774;QD=20.52;ReadPosRankSum=2.083;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:4,9:13:99:297,0,112
19    56464058    rs306501    C    G    663.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:697,54,0
19    56464152    rs73613404    C    T    81.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
19    56466227    rs7259764    A    G    1286.69    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.36;DB;DP=133;Dels=0.0;FS=5.498;HRun=2;HaplotypeScore=1.9787;MQ=59.66;MQ0=0;MQRankSum=0.431;QD=9.6;ReadPosRankSum=1.187;SNPEFF_AMINO_ACID_CHANGE=Q268R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56465867_56467466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:81,52:133:99:1317,0,2437
19    56467281    rs61750024    A    G    345.20    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.151;DB;DP=43;Dels=0.0;FS=4.611;HRun=1;HaplotypeScore=1.9258;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=8.03;ReadPosRankSum=-0.096;SNPEFF_AMINO_ACID_CHANGE=E619;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56465867_56467466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:29,14:43:99:375,0,891
19    56473460    rs6509975    T    C    874.21    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.741;DB;DP=79;Dels=0.0;FS=1.836;HRun=0;HaplotypeScore=5.257;MQ=60.0;MQ0=0;MQRankSum=1.846;QD=11.07;ReadPosRankSum=-0.566;SNPEFF_AMINO_ACID_CHANGE=R690;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56473433_56473603;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:43,36:79:99:904,0,1352
19    56473645    rs11671531    A    G    354.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=24;Dels=0.0;FS=1.935;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.26;QD=14.79;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:12,12:24:99:385,0,305
19    56477687    rs306497    A    G    1458.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=34.72;SNPEFF_AMINO_ACID_CHANGE=K774;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56477579_56477746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1491,117,0
19    56477710    rs306496    T    C    464.77    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.486;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=1.507;QD=9.68;ReadPosRankSum=0.144;SNPEFF_AMINO_ACID_CHANGE=V782A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56477579_56477746;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:25,23:48:99:495,0,783
19    56485077    rs61740015    A    G    1991.16    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.394;DB;DP=169;Dels=0.0;FS=2.799;HRun=1;HaplotypeScore=4.3895;MQ=59.45;MQ0=0;MQRankSum=0.905;QD=11.78;ReadPosRankSum=0.414;SNPEFF_AMINO_ACID_CHANGE=Q865R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56485018_56485188;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:97,71:169:99:2021,0,3110
19    56487430    rs306483    G    A    235.20    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.532;QD=11.76;ReadPosRankSum=0.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:11,9:20:99:265,0,310
19    56487450    rs306482    T    G    802.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,24:24:66.20:835,66,0
19    56487603    rs306481    A    G    1386.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_AMINO_ACID_CHANGE=K937R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56487499_56487669;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1419,111,0
19    56490778    rs306475    C    T    1737.41    PASS    AB=0.337;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=92;Dels=0.0;FS=4.819;HRun=2;HaplotypeScore=2.6219;MQ=59.5;MQ0=0;MQRankSum=0.136;QD=18.88;ReadPosRankSum=-1.211;SNPEFF_AMINO_ACID_CHANGE=F965;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56490760_56490930;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    0/1:31,61:92:99:1767,0,730
19    56499279    rs306457    G    C    881.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=*1049Y;SNPEFF_CODON_CHANGE=taG/taC;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_19_56499180_56499995;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:915,75,0
19    56499345    rs306455    A    G    478.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291971    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:512,39,0
19    56510965    rs62123572    C    T    554.84    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.124;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.197;QD=26.42;ReadPosRankSum=-0.537;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:5,16:21:99:585,0,145
19    56511082    rs35427984    C    G    4288.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.82;MQ0=0;QD=33.76;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4288,328,0
19    56511217    rs12462690    G    A    1258.52    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.32;DB;DP=78;Dels=0.0;FS=6.157;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.19;QD=16.13;ReadPosRankSum=1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:41,37:78:99:1289,0,1398
19    56511233    rs12462663    C    T    965.85    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DB;DP=61;Dels=0.0;FS=3.158;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.224;QD=15.83;ReadPosRankSum=0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:30,31:61:99:996,0,987
19    56519997    rs12462844    T    C    40.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.23;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:2,2:4:30.98:71,0,31
19    56520091    rs12460573    C    T    462.35    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.483;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=59.36;MQ0=0;MQRankSum=0.717;QD=12.84;ReadPosRankSum=1.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:21,15:36:99:492,0,673
19    56520129    rs12460633    G    A    874.82    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.92;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;MQRankSum=1.27;QD=13.67;ReadPosRankSum=-2.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:35,29:64:99:905,0,993
19    56520150    rs12460592    C    G    1071.42    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.449;DB;DP=74;Dels=0.0;FS=3.428;HRun=0;HaplotypeScore=2.9548;MQ=59.69;MQ0=0;MQRankSum=-0.105;QD=14.48;ReadPosRankSum=-2.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:35,39:74:99:1101,0,990
19    56538203    rs3103612    C    A    374.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.946;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.995;QD=13.36;ReadPosRankSum=0.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:14,14:28:99:404,0,500
19    56539240    rs397977    C    T    864.29    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.778;DB;DP=69;Dels=0.0;FS=6.672;HRun=0;HaplotypeScore=1.9991;MQ=59.33;MQ0=0;MQRankSum=-1.057;QD=12.53;ReadPosRankSum=-0.006;SNPEFF_AMINO_ACID_CHANGE=D547;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56538279_56539875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:38,31:69:99:894,0,1128
19    56543810    rs388295    C    A    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.34;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,102
19    56552230    rs2569425    A    G    267.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.97;DB;DP=22;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.328;QD=12.15;ReadPosRankSum=-1.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:11,11:22:99:297,0,397
19    56552456    rs61732213    G    T    2508.50    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.828;DB;DP=183;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8055;MQ=60.0;MQ0=0;MQRankSum=-0.316;QD=13.71;ReadPosRankSum=0.648;SNPEFF_AMINO_ACID_CHANGE=L985;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56552288_56552458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:97,86:183:99:2538,0,2789
19    56561642    rs36018617    C    CA    260.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=12;HaplotypeScore=154.4126;IndelType=I;MQ=48.24;MQ0=0;QD=20.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    1/1:5,8:13:32.89:302,33,0
19    56561655    rs66788091    G    GA    419.20    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.301;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=241.8689;IndelType=I;MQ=51.77;MQ0=0;MQRankSum=0.234;QD=17.47;ReadPosRankSum=-0.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:15,9:24:99:458,0,101
19    56561749    rs2574762    A    G    1692.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.52;MQ0=0;QD=30.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1726,144,0
19    56564916    rs35553570    G    C    114.34    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=16.33;ReadPosRankSum=-1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:3,4:7:99:144,0,100
19    56565164    rs3103057    G    A    1734.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=36.14;SNPEFF_AMINO_ACID_CHANGE=A1097T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56565004_56565174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1767,138,0
19    56565233    rs386127    A    T    345.39    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=24;Dels=0.0;FS=4.548;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.477;QD=14.39;ReadPosRankSum=-2.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390649    GT:AD:DP:GQ:PL    0/1:9,15:24:99:375,0,308
19    56658374    .    C    T    47.10    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=6.73;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=P32S;SNPEFF_CODON_CHANGE=Ccg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56658259_56658577;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF444;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337080    GT:AD:DP:GQ:PL    0/1:4,3:7:77.10:77,0,144
19    56688669    rs4801681    A    G    47.49    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.382;QD=4.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357330    GT:AD:DP:GQ:PL    0/1:8,3:11:77.49:77,0,282
19    56691912    rs274171    G    C    79.59    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.845;DB;DP=18;Dels=0.0;FS=2.218;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.634;QD=4.42;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357330    GT:AD:DP:GQ:PL    0/1:13,5:18:99:110,0,356
19    56693620    rs3745833    C    G    668.82    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=2.681;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=16.72;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=I72M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56693541_56693621;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357330    GT:AD:DP:GQ:PL    0/1:17,23:40:99:699,0,424
19    56693643    rs274174    T    C    911.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6281;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357330    GT:AD:DP:GQ:PL    1/1:0,30:30:84.17:944,84,0
19    56702323    rs4801296    C    T    1904.72    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=5.51;DB;DP=115;Dels=0.0;FS=0.735;HRun=0;HaplotypeScore=0.0;MQ=58.86;MQ0=0;MQRankSum=-1.964;QD=16.56;ReadPosRankSum=0.183;SNPEFF_AMINO_ACID_CHANGE=V208I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56702206_56702356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358992    GT:AD:DP:GQ:PL    0/1:52,63:115:99:1935,0,1427
19    56717333    rs111438429    C    A    880.25    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.872;DB;DP=63;Dels=0.0;FS=7.038;HRun=0;HaplotypeScore=0.8321;MQ=57.21;MQ0=0;MQRankSum=0.084;QD=13.97;ReadPosRankSum=-0.774;SNPEFF_AMINO_ACID_CHANGE=S17R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56717283_56717666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    0/1:32,31:63:99:910,0,915
19    56717353    rs10419548    A    G    2294.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.94;MQ0=0;QD=32.77;SNPEFF_AMINO_ACID_CHANGE=Q24R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56717283_56717666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2327,184,0
19    56717604    .    G    A    46.37    MQFilter40;QDFilter2    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.4;MQ0=69;MQRankSum=0.0;QD=0.53;ReadPosRankSum=2.117;SNPEFF_AMINO_ACID_CHANGE=G108S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56717283_56717666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    0/1:62,25:87:76.36:76,0,137
19    56717607    .    G    A    43.36    MQFilter40;QDFilter2    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.88;MQ0=65;MQRankSum=-0.537;QD=0.52;ReadPosRankSum=2.391;SNPEFF_AMINO_ACID_CHANGE=V109M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56717283_56717666;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    0/1:60,24:84:73.36:73,0,162
19    56717722    rs9917095    T    C    167.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.28;MQ0=11;QD=4.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    1/1:0,36:36:18.05:201,18,0
19    56717908    rs12971737    T    A    87.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
19    56718585    rs4801690    A    G    1445.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.025;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.64;MQ0=0;MQRankSum=-0.074;QD=27.8;ReadPosRankSum=0.322;SNPEFF_AMINO_ACID_CHANGE=Q181R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56718428_56718631;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    1/1:2,50:52:41.50:1479,41,0
19    56718698    rs9807807    A    G    94.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=8.56;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    0/1:6,5:11:99:124,0,177
19    56719405    rs12979551    A    C    2058.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.972;DB;DP=62;Dels=0.0;FS=3.942;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.614;QD=33.21;ReadPosRankSum=-0.657;SNPEFF_AMINO_ACID_CHANGE=E197D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56719403_56719553;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    1/1:2,60:62:99:2092,118,0
19    56719666    rs111847463    C    T    463.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.69;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=56.68;MQ0=0;MQRankSum=0.139;QD=18.53;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    0/1:10,15:25:99:493,0,317
19    56719822    rs1865101    G    T    886.32    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.594;DB;DP=82;Dels=0.0;FS=6.671;HRun=0;HaplotypeScore=0.7887;MQ=54.77;MQ0=0;MQRankSum=-3.028;QD=10.81;ReadPosRankSum=0.141;SNPEFF_AMINO_ACID_CHANGE=G248;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56719818_56720569;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    0/1:47,35:82:99:916,0,1570
19    56719853    rs1865102    C    A    924.72    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.941;DB;DP=103;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=52.09;MQ0=0;MQRankSum=-6.187;QD=8.98;ReadPosRankSum=-0.096;SNPEFF_AMINO_ACID_CHANGE=Q259K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56719818_56720569;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376267    GT:AD:DP:GQ:PL    0/1:58,45:103:99:955,0,1751
19    56733823    rs113925628    G    A    498.86    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.57;MQ0=0;MQRankSum=0.546;QD=14.25;ReadPosRankSum=0.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:18,16:35:99:529,0,552
19    56735785    rs12983050    G    T    64.57    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9955;MQ=39.01;MQ0=0;MQRankSum=1.92;QD=8.07;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:5,3:8:94.56:95,0,158
19    56735826    rs12974075    G    A    151.35    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=3.873;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=41.41;MQ0=0;MQRankSum=-1.536;QD=6.58;ReadPosRankSum=1.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:13,9:23:99:181,0,366
19    56735835    rs12973660    C    T    170.81    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=40.88;MQ0=0;MQRankSum=-1.972;QD=6.57;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:15,11:26:99:201,0,493
19    56735846    rs12974095    G    A    56.09    QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=4.202;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.948;MQ=42.15;MQ0=0;MQRankSum=-1.238;QD=1.65;ReadPosRankSum=1.441;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:26,8:34:86.08:86,0,699
19    56735856    rs12973674    C    T    270.76    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.045;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9438;MQ=43.03;MQ0=0;MQRankSum=-3.345;QD=6.77;ReadPosRankSum=0.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:25,15:40:99:301,0,831
19    56735900    rs10416431    C    T    36.90    QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=1.948;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.1093;MQ=44.84;MQ0=0;MQRankSum=-3.886;QD=0.65;ReadPosRankSum=1.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:46,10:57:66.90:67,0,1596
19    56736094    rs143462624    C    T    36.77    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=4.8;DB;DP=140;DS;Dels=0.0;FS=4.813;HRun=0;HaplotypeScore=3.7792;MQ=18.44;MQ0=53;MQRankSum=-1.981;QD=0.26;ReadPosRankSum=0.05;SNPEFF_AMINO_ACID_CHANGE=G108S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56736032_56736542;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391713    GT:AD:DP:GQ:PL    0/1:112,28:140:66.77:67,0,1318
19    56736553    rs68013312    A    AG    227.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=13.7065;IndelType=I;MQ=59.87;MQ0=0;QD=37.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:269,18,0
19    56755560    rs11665987    T    A    523.70    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.307;DB;DP=73;Dels=0.0;FS=7.403;HRun=0;HaplotypeScore=0.6651;MQ=46.91;MQ0=2;MQRankSum=0.308;QD=7.17;ReadPosRankSum=-0.897;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:52,21:73:99:554,0,1506
19    56755770    rs4801693    G    A    833.74    MQFilter40    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=1.883;DB;DP=90;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=26.86;MQ0=41;MQRankSum=3.115;QD=9.26;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:50,39:90:99:864,0,160
19    56755867    rs111429542    G    A    615.46    MQFilter40    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.83;MQ0=11;MQRankSum=3.57;QD=10.26;ReadPosRankSum=-0.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    0/1:33,26:60:99:645,0,377
19    56758220    rs3972669    G    A    3434.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.723;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4029;MQ=58.48;MQ0=0;MQRankSum=1.698;QD=32.71;ReadPosRankSum=-0.824;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    1/1:2,103:105:99:3434,256,0
19    56758938    rs35779585    G    A    1210.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8661;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=32.73;ReadPosRankSum=-0.481;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254165    GT:AD:DP:GQ:PL    1/1:1,36:37:96.31:1244,96,0
19    56888650    rs33949495    C    T    482.16    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=59.14;MQ0=0;MQRankSum=-0.184;QD=17.86;ReadPosRankSum=-0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF542;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462524    GT:AD:DP:GQ:PL    0/1:11,16:27:99:512,0,267
19    56895496    rs12978696    C    T    661.41    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=2.104;DB;DP=68;Dels=0.0;FS=2.047;HRun=2;HaplotypeScore=0.734;MQ=59.59;MQ0=0;MQRankSum=-0.184;QD=9.73;ReadPosRankSum=0.35;SNPEFF_AMINO_ACID_CHANGE=K430;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56894648_56896553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF582;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301310    GT:AD:DP:GQ:PL    0/1:39,29:68:99:691,0,1272
19    56901293    rs75713063    C    T    333.20    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.83;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.052;QD=12.82;ReadPosRankSum=1.142;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF582;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301310    GT:AD:DP:GQ:PL    0/1:15,11:26:99:363,0,506
19    56901620    rs2288860    C    A    726.53    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.407;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.539;QD=17.3;ReadPosRankSum=0.565;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF582;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301310    GT:AD:DP:GQ:PL    0/1:19,23:42:99:757,0,605
19    56918560    rs4801159    T    A    687.65    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.957;DB;DP=43;Dels=0.0;FS=1.868;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=15.99;ReadPosRankSum=-0.304;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF583;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291598    GT:AD:DP:GQ:PL    0/1:20,23:43:99:718,0,647
19    56918574    rs2288862    T    C    465.16    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.766;DB;DP=35;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.7;QD=13.29;ReadPosRankSum=0.644;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF583;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291598    GT:AD:DP:GQ:PL    0/1:18,17:35:99:495,0,605
19    56918598    rs2288863    T    C    264.38    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.423;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.318;QD=16.52;ReadPosRankSum=-0.635;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF583;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291598    GT:AD:DP:GQ:PL    0/1:7,9:16:99:294,0,238
19    56918661    rs4801160    T    G    106.93    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.39;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF583;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291598    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:137,0,27
19    56934111    rs917652    A    G    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF583;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291598    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
19    56935527    rs3810340    A    G    725.87    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.198;DB;DP=59;Dels=0.0;FS=1.006;HRun=0;HaplotypeScore=0.9665;MQ=59.22;MQ0=0;MQRankSum=0.711;QD=12.3;ReadPosRankSum=-0.232;SNPEFF_AMINO_ACID_CHANGE=A500;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56934260_56936400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF583;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291598    GT:AD:DP:GQ:PL    0/1:28,31:59:99:756,0,927
19    56953585    rs3760849    T    C    958.83    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.691;DB;DP=74;Dels=0.0;FS=9.854;HRun=0;HaplotypeScore=0.5784;MQ=59.01;MQ0=0;MQRankSum=-0.78;QD=12.96;ReadPosRankSum=-0.503;SNPEFF_AMINO_ACID_CHANGE=K260R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56950696_56954110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF667;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292069    GT:AD:DP:GQ:PL    0/1:39,35:74:99:989,0,1185
19    56953863    rs8107758    T    C    1956.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=31.06;SNPEFF_AMINO_ACID_CHANGE=T167;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56950696_56954110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF667;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292069    GT:AD:DP:GQ:PL    1/1:0,62:63:99:1990,159,0
19    56953963    rs35914474    G    A    1151.63    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=2.772;DB;DP=100;Dels=0.02;FS=10.267;HRun=1;HaplotypeScore=4.4479;MQ=59.74;MQ0=0;MQRankSum=1.438;QD=11.29;ReadPosRankSum=0.409;SNPEFF_AMINO_ACID_CHANGE=P134L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56950696_56954110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF667;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292069    GT:AD:DP:GQ:PL    0/1:55,45:100:99:1182,0,1732
19    56973848    rs35027158    T    C    264.03    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.235;DB;DP=29;Dels=0.0;FS=3.9;HRun=4;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.941;QD=9.1;ReadPosRankSum=-1.505;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF667;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292069    GT:AD:DP:GQ:PL    0/1:17,12:29:99:294,0,541
19    56978525    rs11881919    T    G    37.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.2;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF667;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292069    GT:AD:DP:GQ:PL    0/1:3,3:6:67.19:67,0,108
19    56981382    rs3760848    T    C    1305.18    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DB;DP=85;Dels=0.0;FS=3.084;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.017;QD=15.36;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=I15V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_56981283_56981424;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF667;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342634    GT:AD:DP:GQ:PL    0/1:37,48:85:99:1335,0,1162
19    57006415    rs17207481    A    G    667.51    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.713;DB;DP=60;Dels=0.0;FS=3.992;HRun=1;HaplotypeScore=0.9469;MQ=56.77;MQ0=0;MQRankSum=-0.267;QD=11.13;ReadPosRankSum=-0.579;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC004696.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000299997    GT:AD:DP:GQ:PL    0/1:33,27:60:99:698,0,932
19    57050515    rs7258088    C    G    79.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=13.29;ReadPosRankSum=-1.38;SNPEFF_AMINO_ACID_CHANGE=A43G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57050317_57050595;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:2,4:6:64.27:110,0,64
19    57058803    .    C    T    202.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DP=12;Dels=0.0;FS=4.771;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=16.9;ReadPosRankSum=0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:4,8:12:98.19:233,0,98
19    57060317    rs2074940    C    T    362.92    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.849;DB;DP=32;Dels=0.0;FS=1.654;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.693;QD=11.34;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:20,12:32:99:393,0,703
19    57060573    rs2074941    C    T    266.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=12;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=22.2;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:4,8:12:99:296,0,124
19    57060606    rs2074942    G    A    174.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=21.76;ReadPosRankSum=0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:2,6:8:59.92:204,0,60
19    57062047    rs1990575    C    T    183.34    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=0.762;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.635;QD=7.33;ReadPosRankSum=0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:18,7:25:99:213,0,561
19    57062073    rs379214    T    C    601.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    1/1:0,18:18:54.14:635,54,0
19    57065189    rs145011    T    C    608.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.985;DB;DP=42;Dels=0.0;FS=1.216;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.644;QD=14.5;ReadPosRankSum=-0.617;SNPEFF_AMINO_ACID_CHANGE=F345;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57065053_57068169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:18,24:42:99:639,0,612
19    57066013    rs10409531    C    T    839.03    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=3.446;DB;DP=71;Dels=0.0;FS=2.083;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.62;QD=11.82;ReadPosRankSum=0.62;SNPEFF_AMINO_ACID_CHANGE=A620V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57065053_57068169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:42,29:71:99:869,0,1287
19    57066843    rs141238428    ATTAG    A    1524.79    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=6.263;DB;DP=88;FS=0.0;HRun=0;HaplotypeScore=409.0702;IndelType=D;MQ=58.51;MQ0=0;MQRankSum=-0.217;QD=17.33;ReadPosRankSum=-0.035;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301318    GT:AD:DP:GQ:PL    0/1:54,34:88:99:1564,0,3224
19    57085600    rs73938004    A    G    1268.88    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.075;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.85;MQ0=0;MQRankSum=0.733;QD=9.99;ReadPosRankSum=-0.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF470;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330619    GT:AD:DP:GQ:PL    0/1:77,50:127:99:1299,0,2513
19    57085769    rs10421285    G    C    2072.67    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.316;DB;DP=127;Dels=0.0;FS=3.401;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.833;QD=16.32;ReadPosRankSum=-0.394;SNPEFF_AMINO_ACID_CHANGE=V23L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57085763_57085889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF470;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330619    GT:AD:DP:GQ:PL    0/1:60,67:127:99:2103,0,1973
19    57085783    rs145150598    T    C    1630.89    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.682;DB;DP=118;Dels=0.0;FS=1.552;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.463;QD=13.82;ReadPosRankSum=0.926;SNPEFF_AMINO_ACID_CHANGE=D27;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57085763_57085889;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF470;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330619    GT:AD:DP:GQ:PL    0/1:61,57:118:99:1661,0,2011
19    57087951    rs995934    G    A    164.87    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.903;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.244;QD=9.16;ReadPosRankSum=-1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF470;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330619    GT:AD:DP:GQ:PL    0/1:11,7:18:99:195,0,367
19    57089050    rs4801177    C    T    335.81    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=0.607;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.022;QD=11.58;ReadPosRankSum=1.101;SNPEFF_AMINO_ACID_CHANGE=T418I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57088081_57089951;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF470;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330619    GT:AD:DP:GQ:PL    0/1:18,11:29:99:366,0,647
19    57175578    rs12610410    C    T    436.09    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.673;DB;DP=29;Dels=0.0;FS=6.219;HRun=0;HaplotypeScore=2.3574;MQ=60.0;MQ0=0;MQRankSum=1.045;QD=15.04;ReadPosRankSum=0.812;SNPEFF_AMINO_ACID_CHANGE=G330D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57174635_57176613;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF835;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537055    GT:AD:DP:GQ:PL    0/1:13,16:29:99:466,0,359
19    57184136    rs10409943    C    G    143.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.027;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.88;MQ0=0;MQRankSum=-0.201;QD=10.28;ReadPosRankSum=0.421;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF835;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537055    GT:AD:DP:GQ:PL    0/1:7,7:14:99:174,0,258
19    57286568    rs148139560    A    G    1010.97    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.508;DB;DP=56;Dels=0.0;FS=3.946;HRun=0;HaplotypeScore=0.8941;MQ=59.67;MQ0=0;MQRankSum=1.796;QD=18.05;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=C358R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57285930_57286897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000221722    GT:AD:DP:GQ:PL    0/1:24,32:56:99:1041,0,812
19    57290616    rs2286749    C    G    79.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221722    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
19    57290733    rs2286750    C    A    780.84    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.523;QD=15.02;ReadPosRankSum=-1.294;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221722    GT:AD:DP:GQ:PL    0/1:24,28:52:99:811,0,740
19    57293394    rs2286751    A    G    2182.75    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=0.551;DB;DP=142;Dels=0.0;FS=5.062;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.489;QD=15.37;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=S191;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57293321_57293489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000221722    GT:AD:DP:GQ:PL    0/1:68,74:142:99:2213,0,2140
19    57325083    rs34051133    C    T    724.30    PASS    AB=0.242;AC=1;AF=0.50;AN=2;BaseQRankSum=0.936;DB;DP=33;Dels=0.0;FS=4.212;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.718;QD=21.95;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=R1576H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57321445_57328947;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326441    GT:AD:DP:GQ:PL    0/1:8,25:33:99:754,0,205
19    57335179    rs1860566    T    C    108.27    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=15.47;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221722    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,100
19    57641146    rs1027392    A    G    1625.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=37.8;SNPEFF_AMINO_ACID_CHANGE=N368S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57640028_57643155;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP29;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254181    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1659,123,0
19    57642098    rs3764574    G    A    1026    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=31.09;SNPEFF_AMINO_ACID_CHANGE=V685;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57640028_57643155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254181    GT:AD:DP:GQ:PL    1/1:0,33:33:81.25:1059,81,0
19    57642575    rs61757571    T    C    508.43    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.878;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.53;MQ0=0;MQRankSum=1.109;QD=10.38;ReadPosRankSum=-0.661;SNPEFF_AMINO_ACID_CHANGE=D844;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57640028_57643155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254181    GT:AD:DP:GQ:PL    0/1:29,20:49:99:538,0,879
19    57642782    rs9973206    C    A    1897.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.95;SNPEFF_AMINO_ACID_CHANGE=Y913*;SNPEFF_CODON_CHANGE=taC/taA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_19_57640028_57643155;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP29;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000254181    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1930,141,0
19    57646570    rs4801433    T    C    3215.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;QD=31.22;SNPEFF_AMINO_ACID_CHANGE=I379V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57645464_57647463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    1/1:0,103:103:99:3249,259,0
19    57647015    rs7251328    A    G    2653.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5983;MQ=59.18;MQ0=0;QD=33.58;SNPEFF_AMINO_ACID_CHANGE=N230;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57645464_57647463;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2686,214,0
19    57647236    rs7252632    T    C    3600.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=N157D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57645464_57647463;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3600,283,0
19    57648277    rs4801200    A    T    2270.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=L69M;SNPEFF_CODON_CHANGE=Ttg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57648241_57648339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2303,172,0
19    57648433    rs2370135    T    C    317.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:350,30,0
19    57649735    rs76943613    G    A    380.08    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=3.101;DB;DP=21;Dels=0.0;FS=2.754;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.602;QD=18.1;ReadPosRankSum=0.046;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    0/1:6,15:21:99:410,0,126
19    57649962    rs10407445    C    T    1348.10    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.254;DB;DP=84;Dels=0.0;FS=4.671;HRun=2;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.388;QD=16.05;ReadPosRankSum=1.153;SNPEFF_AMINO_ACID_CHANGE=R7K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57649840_57649966;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    0/1:35,49:84:99:1378,0,1064
19    57653864    rs11084488    T    C    57.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.14;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    0/1:5,3:8:87.12:87,0,159
19    57654065    rs58537382    T    C    516.75    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.929;DB;DP=50;Dels=0.0;FS=3.23;HRun=0;HaplotypeScore=0.9332;MQ=59.54;MQ0=0;MQRankSum=-0.111;QD=10.33;ReadPosRankSum=-0.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    0/1:29,21:50:99:547,0,860
19    57654104    rs59976893    T    C    256.89    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.833;QD=8.03;ReadPosRankSum=-1.151;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000269834    GT:AD:DP:GQ:PL    0/1:21,11:32:99:287,0,709
19    57665750    rs8108591    T    C    65.19    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.774;QD=5.01;ReadPosRankSum=0.386;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUXA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554048    GT:AD:DP:GQ:PL    0/1:9,4:13:95.18:95,0,300
19    57666840    rs12459119    G    A    74.69    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.67;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUXA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000554048    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,141
19    57705033    rs924020    C    T    207.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF264;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263095    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
19    57723007    rs2074858    G    C    984.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.545;DB;DP=35;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.139;QD=28.13;ReadPosRankSum=-1.238;SNPEFF_AMINO_ACID_CHANGE=R181T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57722722_57734212;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF264;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263095    GT:AD:DP:GQ:PL    1/1:1,34:35:39.02:1018,39,0
19    57723013    rs917340    G    A    975.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DB;DP=34;Dels=0.0;FS=3.724;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.612;QD=28.7;ReadPosRankSum=-0.815;SNPEFF_AMINO_ACID_CHANGE=R183H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57722722_57734212;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF264;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263095    GT:AD:DP:GQ:PL    1/1:1,33:34:44.27:1009,44,0
19    57743039    rs758098    T    C    551.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302804    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:584,45,0
19    57764770    rs10421632    G    A    341.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.0;SNPEFF_AMINO_ACID_CHANGE=V195I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57764441_57774106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF805;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414468    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:375,27,0
19    57765432    rs8100154    A    G    1944.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.88;DB;DP=64;Dels=0.0;FS=3.704;HRun=0;HaplotypeScore=1.9153;MQ=51.61;MQ0=0;MQRankSum=-1.562;QD=30.38;ReadPosRankSum=1.619;SNPEFF_AMINO_ACID_CHANGE=K282;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57764441_57774106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF805;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354309    GT:AD:DP:GQ:PL    1/1:1,63:64:99:1978,128,0
19    57801984    .    A    G    106.65    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.652;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.945;QD=7.11;ReadPosRankSum=-1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF460;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360338    GT:AD:DP:GQ:PL    0/1:9,6:15:99:137,0,320
19    57802911    rs36032958    G    A    605.21    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.16;DB;DP=58;Dels=0.0;FS=1.039;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-0.624;QD=10.43;ReadPosRankSum=0.039;SNPEFF_AMINO_ACID_CHANGE=R293;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57802067_57803902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF460;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537645    GT:AD:DP:GQ:PL    0/1:34,24:58:99:635,0,1019
19    57832292    rs66494727    C    T    56.10    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.61;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF543;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321545    GT:AD:DP:GQ:PL    0/1:7,3:10:86.09:86,0,151
19    57834897    rs4801465    G    C    2351.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.6651;MQ=59.65;MQ0=0;QD=35.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF543;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321545    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2384,184,0
19    57834963    rs4801466    C    T    1422.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.987;DB;DP=102;Dels=0.0;FS=6.406;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.391;QD=13.95;ReadPosRankSum=1.661;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF543;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321545    GT:AD:DP:GQ:PL    0/1:51,51:102:99:1453,0,1440
19    57835297    rs4801217    G    T    100.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=11.11;ReadPosRankSum=1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF543;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321545    GT:AD:DP:GQ:PL    0/1:4,5:9:99:130,0,143
19    57839150    rs8100491    A    G    464.60    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.447;DB;DP=46;Dels=0.0;FS=1.137;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=2.195;QD=10.1;ReadPosRankSum=-0.724;SNPEFF_AMINO_ACID_CHANGE=Q107R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57839072_57842144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF543;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321545    GT:AD:DP:GQ:PL    0/1:27,19:46:99:495,0,716
19    57839567    rs1968090    T    A    806.75    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.115;DB;DP=57;Dels=0.0;FS=1.012;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.04;QD=14.15;ReadPosRankSum=0.487;SNPEFF_AMINO_ACID_CHANGE=L246H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57839072_57842144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF543;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321545    GT:AD:DP:GQ:PL    0/1:29,28:57:99:837,0,869
19    57839690    rs35238720    A    T    892.61    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.096;DB;DP=77;Dels=0.0;FS=0.914;HRun=0;HaplotypeScore=2.6573;MQ=57.73;MQ0=0;MQRankSum=-0.314;QD=11.59;ReadPosRankSum=1.581;SNPEFF_AMINO_ACID_CHANGE=E287V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57839072_57842144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF543;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000321545    GT:AD:DP:GQ:PL    0/1:41,36:77:99:923,0,1264
19    57865082    rs862703    T    C    1091.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.866;MQ=60.34;MQ0=0;MQRankSum=1.191;QD=34.11;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF304;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282286    GT:AD:DP:GQ:PL    1/1:1,31:32:45.53:1125,46,0
19    57865149    rs862704    C    T    730.16    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.55;DB;DP=46;Dels=0.0;FS=1.113;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.077;QD=15.87;ReadPosRankSum=0.913;SNPEFF_AMINO_ACID_CHANGE=L30;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57865093_57865219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF304;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282286    GT:AD:DP:GQ:PL    0/1:22,24:46:99:760,0,695
19    57866502    rs7249665    T    C    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.79;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF304;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282286    GT:AD:DP:GQ:PL    0/1:3,2:5:68.95:69,0,97
19    57866873    rs862707    A    G    70.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.001;QD=7.83;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF304;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282286    GT:AD:DP:GQ:PL    0/1:6,3:9:99:100,0,196
19    57868336    rs862709    A    G    1778.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_AMINO_ACID_CHANGE=K367E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57867398_57871266;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF304;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282286    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1811,147,0
19    57868879    rs34411126    T    C    442.57    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.56;DB;DP=40;Dels=0.0;FS=1.264;HRun=0;HaplotypeScore=0.9993;MQ=59.42;MQ0=0;MQRankSum=0.428;QD=11.06;ReadPosRankSum=-1.367;SNPEFF_AMINO_ACID_CHANGE=L548;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57867398_57871266;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF304;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282286    GT:AD:DP:GQ:PL    0/1:24,16:40:99:473,0,732
19    57883371    rs11669820    G    A    2598.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.08;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF547;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282282    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2632,199,0
19    57890000    rs2361119    C    T    459.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF547;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391704    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:492,36,0
19    57890360    rs8100747    T    C    165.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF547;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391704    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
19    57909827    rs17856896    G    T    1232.23    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.434;DB;DP=105;Dels=0.0;FS=9.911;HRun=0;HaplotypeScore=0.6651;MQ=59.38;MQ0=0;MQRankSum=-1.821;QD=11.74;ReadPosRankSum=-2.516;SNPEFF_AMINO_ACID_CHANGE=A58S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57909798_57913917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF548;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366197    GT:AD:DP:GQ:PL    0/1:56,49:105:99:1262,0,1851
19    57909872    rs4801478    G    A    4003    PASS    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=36.06;SNPEFF_AMINO_ACID_CHANGE=A73T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57909798_57913917;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF548;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000366197    GT:AD:DP:GQ:PL    1/1:0,111:111:99:4003,304,0
19    57922664    rs4801480    T    C    117.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.58;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_57922529_57922774;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000307658    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:150,12,0
19    57922713    rs12974211    C    G    59.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=9.98;ReadPosRankSum=0.358;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_57922529_57922774;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307658    GT:AD:DP:GQ:PL    0/1:2,4:6:63.70:90,0,64
19    57933003    rs2023761    T    C    117.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.51;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307658    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:150,12,0
19    57953121    rs4801483    C    T    230.62    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.613;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.255;QD=9.22;ReadPosRankSum=1.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF749;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334181    GT:AD:DP:GQ:PL    0/1:16,9:25:99:261,0,602
19    57954619    rs73065220    G    A    599.82    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DB;DP=36;Dels=0.0;FS=9.133;HRun=0;HaplotypeScore=0.9832;MQ=58.05;MQ0=0;MQRankSum=0.545;QD=16.66;ReadPosRankSum=-0.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF749;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334181    GT:AD:DP:GQ:PL    0/1:15,21:36:99:630,0,462
19    57954628    rs7249430    G    A    1459.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=58.25;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF749;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334181    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1493,111,0
19    57956828    rs7246856    T    G    4509.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.64;MQ0=0;QD=35.51;SNPEFF_AMINO_ACID_CHANGE=I771R;SNPEFF_CODON_CHANGE=aTa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57954659_57956853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF749;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334181    GT:AD:DP:GQ:PL    1/1:0,127:127:99:4510,328,0
19    57985460    rs2074059    T    A    277.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.066;DB;DP=30;Dels=0.0;FS=6.368;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=9.24;ReadPosRankSum=0.814;SNPEFF_AMINO_ACID_CHANGE=M106L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57980954_57985789;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF772;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427512    GT:AD:DP:GQ:PL    0/1:20,10:30:99:307,0,711
19    57985566    rs2074060    G    C    637.34    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.454;DB;DP=55;Dels=0.0;FS=5.872;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-1.324;QD=11.59;ReadPosRankSum=-2.38;SNPEFF_AMINO_ACID_CHANGE=I107M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_57984642_57985566;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF772;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291809    GT:AD:DP:GQ:PL    0/1:31,24:55:99:667,0,1042
19    57985889    rs7257644    T    C    62.74    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.27;ReadPosRankSum=-1.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF772;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450712    GT:AD:DP:GQ:PL    0/1:7,3:10:92.74:93,0,253
19    57987895    rs2074065    C    T    316.70    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.244;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-2.001;QD=16.67;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284020    GT:AD:DP:GQ:PL    0/1:9,10:19:99:347,0,239
19    57988396    rs2074066    C    T    66.25    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=16.56;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284020    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:96,0,29
19    58002665    rs6510084    A    G    153.84    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=25.64;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221735    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:184,0,23
19    58002819    rs6510085    T    A    1059.78    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.804;DB;DP=62;Dels=0.0;FS=2.844;HRun=1;HaplotypeScore=0.0;MQ=53.88;MQ0=0;MQRankSum=-0.875;QD=17.09;ReadPosRankSum=-0.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000221735    GT:AD:DP:GQ:PL    0/1:29,33:62:99:1090,0,868
19    58002964    rs8108040    G    C    566.08    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.93;DB;DP=52;Dels=0.0;FS=1.639;HRun=0;HaplotypeScore=0.9867;MQ=46.83;MQ0=3;MQRankSum=-2.79;QD=10.89;ReadPosRankSum=-1.97;SNPEFF_AMINO_ACID_CHANGE=L11;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58002836_58002965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000519310    GT:AD:DP:GQ:PL    0/1:28,24:52:99:596,0,840
19    58003359    rs117470965    T    G    134.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=26.89;SNPEFF_AMINO_ACID_CHANGE=V91G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58003325_58003368;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284020    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:167,15,0
19    58003580    rs2074071    A    G    1644.53    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=3.398;DB;DP=154;Dels=0.0;FS=1.297;HRun=1;HaplotypeScore=1.367;MQ=52.28;MQ0=0;MQRankSum=-0.636;QD=10.68;ReadPosRankSum=0.125;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000221735    GT:AD:DP:GQ:PL    0/1:89,65:154:99:1675,0,2500
19    58003613    rs2074072    C    T    1922.45    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.272;DB;DP=143;Dels=0.0;FS=1.35;HRun=1;HaplotypeScore=0.9998;MQ=53.51;MQ0=0;MQRankSum=-0.841;QD=13.44;ReadPosRankSum=0.124;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523138    GT:AD:DP:GQ:PL    0/1:78,65:143:99:1952,0,2486
19    58003728    rs2074073    G    A    2113.68    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.752;DB;DP=147;Dels=0.0;FS=6.271;HRun=0;HaplotypeScore=1.6553;MQ=59.21;MQ0=0;MQRankSum=-0.148;QD=14.38;ReadPosRankSum=0.235;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520540    GT:AD:DP:GQ:PL    0/1:76,71:147:99:2144,0,2302
19    58003873    rs2074074    C    T    881.82    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.609;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.407;QD=14.22;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518999    GT:AD:DP:GQ:PL    0/1:30,31:61:99:912,0,1046
19    58004158    rs2074075    C    T    418.84    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.403;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=58.41;MQ0=0;MQRankSum=-0.882;QD=9.52;ReadPosRankSum=-1.428;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518999    GT:AD:DP:GQ:PL    0/1:27,17:44:99:449,0,925
19    58004346    rs2074076    G    C    479.11    PASS    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=46;Dels=0.0;FS=5.089;HRun=0;HaplotypeScore=1.8305;MQ=59.59;MQ0=0;MQRankSum=0.151;QD=10.42;ReadPosRankSum=0.104;SNPEFF_AMINO_ACID_CHANGE=E108Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58004224_58004544;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000521137    GT:AD:DP:GQ:PL    0/1:27,19:46:99:509,0,886
19    58004931    rs2074077    A    G    406.41    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.177;DB;DP=48;Dels=0.0;FS=9.536;HRun=0;HaplotypeScore=0.0;MQ=45.42;MQ0=8;MQRankSum=-3.14;QD=8.47;ReadPosRankSum=1.183;SNPEFF_AMINO_ACID_CHANGE=I290V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58004224_58006048;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415379    GT:AD:DP:GQ:PL    0/1:22,26:48:99:436,0,764
19    58005666    rs7248266    C    G    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284020    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:70,0,69
19    58005668    rs7248267    C    A    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF419;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284020    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,72
19    58015981    rs2074061    C    T    486.97    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.266;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.24;MQ0=0;MQRankSum=-0.404;QD=9.55;ReadPosRankSum=-0.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:33,18:51:99:517,0,1087
19    58017603    rs2012431    C    T    132.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.452;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.91;MQ0=0;MQRankSum=1.097;QD=9.47;ReadPosRankSum=0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:8,6:14:99:163,0,243
19    58017605    rs2012426    A    G    124.78    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.743;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.91;MQ0=0;MQRankSum=0.323;QD=8.91;ReadPosRankSum=0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:8,6:14:99:155,0,254
19    58017635    rs756980    G    A    314.82    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.421;DB;DP=18;Dels=0.0;FS=3.14;HRun=0;HaplotypeScore=0.0;MQ=59.93;MQ0=0;MQRankSum=0.4;QD=17.49;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:8,10:18:99:345,0,177
19    58017659    rs57412218    C    CAT    638.75    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=2.289;DB;DP=27;FS=13.719;HRun=0;HaplotypeScore=146.7143;IndelType=I;MQ=59.9;MQ0=0;MQRankSum=-0.283;QD=23.66;ReadPosRankSum=-0.952;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:13,14:27:99:678,0,509
19    58017758    rs55823456    G    C    926.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.057;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=1.535;QD=12.03;ReadPosRankSum=0.26;SNPEFF_AMINO_ACID_CHANGE=A99P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58017726_58019508;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:35,42:77:99:956,0,1131
19    58018618    rs2074064    A    G    1073.01    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.76;DB;DP=74;Dels=0.0;FS=12.175;HRun=0;HaplotypeScore=0.9159;MQ=59.69;MQ0=0;MQRankSum=-0.601;QD=14.5;ReadPosRankSum=1.594;SNPEFF_AMINO_ACID_CHANGE=K385;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58017726_58019508;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:38,36:74:99:1103,0,1130
19    58024328    rs7254526    T    C    155.56    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=17.28;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:3,6:9:99:186,0,101
19    58024442    rs7253945    G    A    114.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=11.43;ReadPosRankSum=-1.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF773;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282292    GT:AD:DP:GQ:PL    0/1:5,5:10:99:144,0,147
19    58038964    rs12461014    T    A    293.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=I8N;SNPEFF_CODON_CHANGE=aTt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58038693_58038974;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF549;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000240719    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:326,24,0
19    58058246    rs1548475    T    C    335.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC003682.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506609    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
19    58058536    rs1548476    A    G    533.55    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.465;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.129;QD=18.4;ReadPosRankSum=0.332;SNPEFF_AMINO_ACID_CHANGE=I318T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58058343_58059361;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC003682.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000506609    GT:AD:DP:GQ:PL    0/1:12,17:29:99:564,0,313
19    58058739    rs10410631    T    C    392.89    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.923;DB;DP=27;Dels=0.0;FS=1.462;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.308;QD=14.55;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=Q250;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58058343_58059361;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC003682.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000506609    GT:AD:DP:GQ:PL    0/1:14,13:27:99:423,0,393
19    58084588    rs145794172    G    C    1374.19    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=2.475;DB;DP=112;Dels=0.0;FS=6.139;HRun=0;HaplotypeScore=1.4725;MQ=59.38;MQ0=0;MQRankSum=0.851;QD=12.27;ReadPosRankSum=1.051;SNPEFF_AMINO_ACID_CHANGE=H208Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58084378_58085069;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF416;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428052    GT:AD:DP:GQ:PL    0/1:65,47:112:99:1404,0,2023
19    58084930    rs3746222    G    A    952.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.29;SNPEFF_AMINO_ACID_CHANGE=T100;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58084378_58085069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF416;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359489    GT:AD:DP:GQ:PL    1/1:0,27:27:75.22:986,75,0
19    58099706    rs73060458    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307468    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
19    58115503    rs73062589    A    G    97.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.13;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332854    GT:AD:DP:GQ:PL    0/1:8,4:12:99:128,0,232
19    58116929    rs9676996    A    C    176.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=17.69;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332854    GT:AD:DP:GQ:PL    0/1:4,6:10:99:207,0,125
19    58117083    rs9677004    A    G    738.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.375;DB;DP=45;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.182;QD=16.4;ReadPosRankSum=-0.227;SNPEFF_AMINO_ACID_CHANGE=T64A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58117054_58119637;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF530;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332854    GT:AD:DP:GQ:PL    0/1:18,27:45:99:768,0,519
19    58117223    rs2360543    T    A    2046.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=37.21;SNPEFF_AMINO_ACID_CHANGE=H110Q;SNPEFF_CODON_CHANGE=caT/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58117054_58119637;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF530;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332854    GT:AD:DP:GQ:PL    1/1:0,55:55:99:2080,150,0
19    58118715    rs10715037    CTT    C    75.52    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=25;FS=0.0;HRun=16;HaplotypeScore=232.6606;IndelType=D;MQ=54.14;MQ0=0;MQRankSum=1.087;QD=3.02;ReadPosRankSum=0.453;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF530;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332854    GT:AD:DP:GQ:PL    0/1:12,8:25:99:115,0,160
19    58144715    rs9749449    A    G    75.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.72;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_19_58144596_58144804;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000240731    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,103
19    58145230    rs73064514    C    T    530.92    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.5;DB;DP=31;Dels=0.0;FS=5.93;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.14;QD=17.13;ReadPosRankSum=0.5;SNPEFF_AMINO_ACID_CHANGE=A15V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58145081_58145273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544273    GT:AD:DP:GQ:PL    0/1:13,18:31:99:561,0,394
19    58151959    rs73064531    C    T    36.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.15;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240731    GT:AD:DP:GQ:PL    0/1:2,2:4:66.59:67,0,73
19    58152020    rs3746221    T    C    232.51    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=-1.531;QD=21.14;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240731    GT:AD:DP:GQ:PL    0/1:3,8:11:86.89:263,0,87
19    58152033    rs3746220    A    G    302.38    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.38;QD=18.9;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000240731    GT:AD:DP:GQ:PL    0/1:6,10:16:99:332,0,205
19    58152361    rs3746219    T    A    581.77    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.245;DB;DP=53;Dels=0.0;FS=2.35;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=10.98;ReadPosRankSum=-0.682;SNPEFF_AMINO_ACID_CHANGE=T108;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58152072_58154135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391703    GT:AD:DP:GQ:PL    0/1:32,21:53:99:612,0,1054
19    58152795    rs11879465    C    T    567    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=2.035;DB;DP=33;Dels=0.0;FS=3.067;HRun=0;HaplotypeScore=1.8625;MQ=59.3;MQ0=0;MQRankSum=0.774;QD=17.18;ReadPosRankSum=0.63;SNPEFF_AMINO_ACID_CHANGE=A253V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58152072_58154135;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391703    GT:AD:DP:GQ:PL    0/1:16,17:33:99:597,0,427
19    58152817    rs11880050    G    C    626.43    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=43;Dels=0.0;FS=6.673;HRun=1;HaplotypeScore=1.7825;MQ=59.46;MQ0=0;MQRankSum=-0.109;QD=14.57;ReadPosRankSum=0.717;SNPEFF_AMINO_ACID_CHANGE=S260;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58152072_58154135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391703    GT:AD:DP:GQ:PL    0/1:22,21:43:99:656,0,676
19    58153000    rs3746218    T    C    662.63    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=2.975;DB;DP=53;Dels=0.0;FS=1.047;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.207;QD=12.5;ReadPosRankSum=1.367;SNPEFF_AMINO_ACID_CHANGE=F321;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58152072_58154135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391703    GT:AD:DP:GQ:PL    0/1:29,24:53:99:693,0,857
19    58153009    rs3746217    C    T    754.45    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=51;Dels=0.0;FS=2.434;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.651;QD=14.79;ReadPosRankSum=1.097;SNPEFF_AMINO_ACID_CHANGE=I324;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58152072_58154135;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391703    GT:AD:DP:GQ:PL    0/1:26,25:51:99:784,0,784
19    58153577    rs3746216    T    C    496.39    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=1.997;DB;DP=35;Dels=0.0;FS=4.715;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=14.18;ReadPosRankSum=1.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420680    GT:AD:DP:GQ:PL    0/1:18,17:35:99:526,0,593
19    58231807    rs2239986    A    G    2557.47    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.905;DB;DP=248;DS;Dels=0.0;FS=0.472;HRun=4;HaplotypeScore=1.5362;MQ=59.34;MQ0=0;MQRankSum=0.491;QD=10.31;ReadPosRankSum=-1.535;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF671;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317398    GT:AD:DP:GQ:PL    0/1:143,105:248:99:2587,0,4359
19    58234915    rs9676736    T    C    90.35    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=15.06;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF671;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317398    GT:AD:DP:GQ:PL    0/1:2,4:6:65.27:120,0,65
19    58266192    rs12609667    C    T    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.63;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF776;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431353    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:69,0,69
19    58288169    rs2285615    C    T    572.57    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=4.494;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.332;QD=19.74;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308137    GT:AD:DP:GQ:PL    0/1:12,17:29:99:603,0,323
19    58291228    rs2158013    A    G    180.57    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.993;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.448;QD=12.04;ReadPosRankSum=-2.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308137    GT:AD:DP:GQ:PL    0/1:7,8:15:99:211,0,250
19    58301410    rs55658516    T    C    30.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.1;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308137    GT:AD:DP:GQ:PL    0/1:4,2:6:60.57:61,0,136
19    58301602    rs56379637    CAG    C    1679.83    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=7.256;DB;DP=79;FS=3.393;HRun=0;HaplotypeScore=242.1601;IndelType=D;MQ=60.39;MQ0=0;MQRankSum=-0.074;QD=21.26;ReadPosRankSum=0.005;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF586;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308137    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1719,0,1964
19    58301766    rs76568043    TG    T    2067.45    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=9.231;DB;DP=176;FS=0.576;HRun=3;HaplotypeScore=434.9497;IndelType=D;MQ=60.61;MQ0=0;MQRankSum=2.227;QD=11.75;ReadPosRankSum=-1.325;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_58301642_58301768;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF586;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000308137    GT:AD:DP:GQ:PL    0/1:102,74:176:99:2106,0,3844
19    58324710    rs146803584    G    A    1671.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=140;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5224;MQ=43.74;MQ0=11;MQRankSum=0.537;QD=11.94;ReadPosRankSum=1.23;SNPEFF_AMINO_ACID_CHANGE=L38;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58324662_58324788;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF552;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391701    GT:AD:DP:GQ:PL    0/1:70,70:140:99:1701,0,1738
19    58326001    rs2303817    A    G    217.33    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=13;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=16.72;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF552;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391701    GT:AD:DP:GQ:PL    0/1:6,7:13:99:247,0,156
19    58352289    rs2562052    G    A    630.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.93;MQ0=24;QD=12.35;SNPEFF_AMINO_ACID_CHANGE=V82M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58352206_58352523;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000316462    GT:AD:DP:GQ:PL    1/1:0,51:51:63.08:663,63,0
19    58352522    rs12981244    G    A    2129.07    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=193;Dels=0.0;FS=1.141;HRun=0;HaplotypeScore=3.5344;MQ=44.87;MQ0=2;MQRankSum=-2.404;QD=11.03;ReadPosRankSum=0.439;SNPEFF_AMINO_ACID_CHANGE=R159;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58352206_58352523;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000316462    GT:AD:DP:GQ:PL    0/1:109,84:193:99:2159,0,2780
19    58361328    rs28374851    G    C    142.11    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=48.9;MQ0=0;MQRankSum=0.322;QD=17.76;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316462    GT:AD:DP:GQ:PL    0/1:3,5:8:67.01:172,0,67
19    58361334    rs28577146    G    A    148.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=50.25;MQ0=0;MQRankSum=0.248;QD=16.52;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316462    GT:AD:DP:GQ:PL    0/1:3,6:9:52.37:179,0,52
19    58361549    rs58754895    A    G    125.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.676;QD=12.56;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316462    GT:AD:DP:GQ:PL    0/1:5,5:10:99:156,0,150
19    58367259    rs71354061    C    A    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484707    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:69,0,31
19    58370727    rs77825740    T    G    813.97    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.058;DB;DP=88;Dels=0.0;FS=4.19;HRun=0;HaplotypeScore=0.734;MQ=47.12;MQ0=1;MQRankSum=-5.441;QD=9.25;ReadPosRankSum=3.316;SNPEFF_AMINO_ACID_CHANGE=L273R;SNPEFF_CODON_CHANGE=cTt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58369944_58372184;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376209    GT:AD:DP:GQ:PL    0/1:48,40:88:99:844,0,1432
19    58374130    rs7253130    C    T    246    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.019;DB;DP=32;Dels=0.0;FS=3.449;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.019;QD=7.69;ReadPosRankSum=-1.888;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316462    GT:AD:DP:GQ:PL    0/1:20,12:32:99:276,0,676
19    58374316    rs141589282    T    C    407.81    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.536;DB;DP=20;Dels=0.0;FS=9.951;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.317;QD=20.39;ReadPosRankSum=-1.664;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF587;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316462    GT:AD:DP:GQ:PL    0/1:7,13:20:99:438,0,235
19    58383921    rs4801239    C    T    344.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF814;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376205    GT:AD:DP:GQ:PL    1/1:0,17:17:33.09:378,33,0
19    58385869    rs10687775    C    CATA    4893.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.0;HRun=0;HaplotypeScore=243.7481;IndelType=I;MQ=58.45;MQ0=3;QD=55.61;SNPEFF_AMINO_ACID_CHANGE=H296HI;SNPEFF_CODON_CHANGE=cat/caTATt;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_19_58380747_58386594;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF814;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435989    GT:AD:DP:GQ:PL    1/1:8,75:75:99:4894,220,0
19    58385954    rs10412929    T    C    1663.62    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.716;DB;DP=112;Dels=0.0;FS=8.668;HRun=0;HaplotypeScore=0.9967;MQ=55.88;MQ0=2;MQRankSum=-1.275;QD=14.85;ReadPosRankSum=-0.186;SNPEFF_AMINO_ACID_CHANGE=K268;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58380747_58386594;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF814;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000435989    GT:AD:DP:GQ:PL    0/1:49,63:112:99:1694,0,1491
19    58386651    rs12610589    C    A    266.74    MQFilter40    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=0.899;DB;DP=49;Dels=0.0;FS=1.897;HRun=1;HaplotypeScore=3.488;MQ=19.53;MQ0=24;MQRankSum=1.085;QD=5.44;ReadPosRankSum=-0.837;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF814;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376205    GT:AD:DP:GQ:PL    0/1:27,22:49:99:297,0,217
19    58386762    rs7252219    A    G    282.31    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.0;MQ0=0;MQRankSum=0.919;QD=20.17;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF814;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376205    GT:AD:DP:GQ:PL    0/1:4,10:14:99:312,0,118
19    58439306    rs7253514    G    A    1519.05    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=92;Dels=0.0;FS=0.828;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.985;QD=16.51;ReadPosRankSum=0.363;SNPEFF_AMINO_ACID_CHANGE=A102;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58436991_58439415;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF418;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425570    GT:AD:DP:GQ:PL    0/1:44,48:92:99:1549,0,1216
19    58455381    rs257652    C    T    2957.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=E27;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58455302_58455428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF256;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282308    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2990,223,0
19    58472948    rs10588188    GCA    G    559.86    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=4.759;DB;DP=38;FS=7.073;HRun=0;HaplotypeScore=160.6886;IndelType=D;MQ=57.02;MQ0=0;MQRankSum=-0.684;QD=14.73;ReadPosRankSum=-0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314391    GT:AD:DP:GQ:PL    0/1:22,16:38:99:599,0,1010
19    58472963    rs8102308    T    G    354.50    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=1.535;DB;DP=32;Dels=0.0;FS=8.939;HRun=1;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=-0.729;QD=11.08;ReadPosRankSum=-0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314391    GT:AD:DP:GQ:PL    0/1:19,13:32:99:384,0,554
19    58483954    rs11668548    A    G    163.26    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.949;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.124;QD=8.16;ReadPosRankSum=1.196;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341164    GT:AD:DP:GQ:PL    0/1:14,6:20:99:193,0,490
19    58485439    rs257676    C    T    366.32    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.126;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.921;QD=16.65;ReadPosRankSum=-1.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341164    GT:AD:DP:GQ:PL    0/1:8,14:22:99:396,0,261
19    58485828    rs7249794    C    T    260.20    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.976;DB;DP=23;Dels=0.0;FS=4.123;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.417;QD=11.31;ReadPosRankSum=-1.228;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_58485680_58485904;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C19orf18;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000314391    GT:AD:DP:GQ:PL    0/1:14,9:23:99:290,0,428
19    58491627    rs11673029    T    C    664.10    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.01;DB;DP=70;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.172;QD=9.49;ReadPosRankSum=-0.625;SNPEFF_AMINO_ACID_CHANGE=S141G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58488421_58491647;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341164    GT:AD:DP:GQ:PL    0/1:45,25:70:99:694,0,1476
19    58500271    rs11880378    T    G    244.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341164    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
19    58511150    rs10451433    C    T    288.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.773;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.394;QD=13.09;ReadPosRankSum=-0.722;SNPEFF_AMINO_ACID_CHANGE=R68K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58510632_58511264;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000547121    GT:AD:DP:GQ:PL    0/1:11,11:22:99:318,0,330
19    58512227    rs10406352    G    A    76.12    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=10.87;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550560    GT:AD:DP:GQ:PL    0/1:2,5:7:66.83:106,0,67
19    58512228    rs11670666    T    C    77.90    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=11.13;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000550560    GT:AD:DP:GQ:PL    0/1:2,5:7:63.72:108,0,64
19    58513477    rs4801242    G    A    733.89    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.154;DB;DP=57;Dels=0.0;FS=2.519;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.396;QD=12.88;ReadPosRankSum=0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341164    GT:AD:DP:GQ:PL    0/1:32,25:57:99:764,0,912
19    58513807    rs4801243    A    C    36.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.35;ReadPosRankSum=-1.026;SNPEFF_AMINO_ACID_CHANGE=D110A;SNPEFF_CODON_CHANGE=gAt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58513429_58514414;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2368P22.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000550135    GT:AD:DP:GQ:PL    0/1:2,3:5:51.67:67,0,52
19    58514183    rs9304808    T    C    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.87;SNPEFF_AMINO_ACID_CHANGE=R235;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58513429_58514414;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2368P22.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000550135    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:67,6,0
19    58514475    rs9304809    G    T    192.69    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.818;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.296;QD=19.27;ReadPosRankSum=0.731;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_19_58514148_58514717;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF606;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341164    GT:AD:DP:GQ:PL    0/1:3,7:10:63.59:223,0,64
19    58514715    rs4801540    C    G    537.59    PASS    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.261;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.304;QD=22.4;ReadPosRankSum=0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2368P22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547364    GT:AD:DP:GQ:PL    0/1:5,19:24:99:568,0,144
19    58514815    rs4801244    T    G    119.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=19.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTD-2368P22.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547364    GT:AD:DP:GQ:PL    0/1:2,4:6:64.40:150,0,64
19    58549354    rs113374422    C    T    240.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.37;QD=20.06;ReadPosRankSum=0.185;SNPEFF_AMINO_ACID_CHANGE=S50;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58549096_58549574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282326    GT:AD:DP:GQ:PL    0/1:3,9:12:78.54:271,0,79
19    58549366    rs159870    C    G    514.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=34.28;SNPEFF_AMINO_ACID_CHANGE=L54;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58549096_58549574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000282326    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:547,42,0
19    58549593    rs2241406    C    G    472.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_AMINO_ACID_CHANGE=P130R;SNPEFF_CODON_CHANGE=cCt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58549096_58549812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391700    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:505,42,0
19    58563743    rs1862497    A    G    352.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282326    GT:AD:DP:GQ:PL    1/1:0,18:18:33.08:385,33,0
19    58565431    rs8104122    C    T    316.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.18;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000282326    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:350,27,0
19    58572959    rs2288274    G    A    1650.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_AMINO_ACID_CHANGE=T15;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58572948_58573074;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF135;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313434    GT:AD:DP:GQ:PL    1/1:1,46:47:99:1684,126,0
19    58572979    rs1469087    G    A    1682.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.05;SNPEFF_AMINO_ACID_CHANGE=G22D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58572948_58573074;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF135;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313434    GT:AD:DP:GQ:PL    1/1:0,47:48:99:1715,129,0
19    58579927    rs12461217    A    C    596.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439855    GT:AD:DP:GQ:PL    1/1:0,21:21:48.15:629,48,0
19    58596449    rs2258557    C    T    102.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=10.2;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=G243E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58595212_58596743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSCAN18;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000421612    GT:AD:DP:GQ:PL    0/1:5,5:10:99:132,0,180
19    58598670    rs2287837    C    T    135.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.103;QD=8.47;ReadPosRankSum=-0.473;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515535    GT:AD:DP:GQ:PL    0/1:8,8:16:99:166,0,238
19    58598784    rs2260914    A    G    159.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515535    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
19    58600048    rs1529329    C    T    601.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.146;DB;DP=47;Dels=0.0;FS=6.473;HRun=0;HaplotypeScore=1.8614;MQ=56.99;MQ0=0;MQRankSum=0.534;QD=12.81;ReadPosRankSum=-1.283;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515535    GT:AD:DP:GQ:PL    0/1:23,23:47:99:632,0,577
19    58601221    rs2547354    T    C    848.94    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=2.138;DB;DP=63;Dels=0.0;FS=2.548;HRun=0;HaplotypeScore=0.9159;MQ=59.63;MQ0=0;MQRankSum=0.186;QD=13.48;ReadPosRankSum=0.048;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF135;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000515535    GT:AD:DP:GQ:PL    0/1:32,31:63:99:879,0,1007
19    58640964    rs45589034    G    T    334.83    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.917;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.704;QD=12.4;ReadPosRankSum=0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF329;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358067    GT:AD:DP:GQ:PL    0/1:14,13:27:99:365,0,484
19    58697290    rs157377    C    G    714.87    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.44;DB;DP=46;Dels=0.0;FS=4.623;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.124;QD=15.54;ReadPosRankSum=1.873;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF274;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326804    GT:AD:DP:GQ:PL    0/1:24,22:46:99:745,0,693
19    58718360    rs78144540    A    AG    722.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=3;HaplotypeScore=38.0822;IndelType=I;MQ=60.57;MQ0=0;QD=38.04;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_19_58718087_58718361;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF274;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000326804    GT:AD:DP:GQ:PL    1/1:2,17:19:51.17:765,51,0
19    58774071    rs260462    A    G    1304.98    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.085;DB;DP=102;Dels=0.0;FS=3.798;HRun=0;HaplotypeScore=3.4082;MQ=59.77;MQ0=0;MQRankSum=0.75;QD=12.79;ReadPosRankSum=-0.837;SNPEFF_AMINO_ACID_CHANGE=Q252R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58773743_58774120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF544;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441758    GT:AD:DP:GQ:PL    0/1:53,49:102:99:1335,0,1756
19    58774223    rs34204906    GC    G    185.65    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.54;DB;DP=17;FS=0.0;HRun=2;HaplotypeScore=43.2055;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=0.318;QD=10.92;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF544;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441758    GT:AD:DP:GQ:PL    0/1:10,7:17:99:225,0,347
19    58797344    rs400733    A    C    183.04    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=18.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000196548    GT:AD:DP:GQ:PL    0/1:4,6:10:99:213,0,123
19    58797583    rs74752870    C    CT    340.13    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.49;DB;DP=19;FS=4.32;HRun=1;HaplotypeScore=38.8868;IndelType=I;MQ=61.69;MQ0=0;MQRankSum=0.367;QD=17.9;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000196548    GT:AD:DP:GQ:PL    0/1:9,10:19:99:379,0,294
19    58806083    rs260471    T    C    449.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.997;DB;DP=36;Dels=0.0;FS=2.966;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.182;QD=12.49;ReadPosRankSum=1.601;SNPEFF_AMINO_ACID_CHANGE=H18;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58805860_58807042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546178    GT:AD:DP:GQ:PL    0/1:18,18:36:99:480,0,603
19    58830467    rs1265985    G    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC020915.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413518    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
19    58858231    rs3214663    GC    G    464.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=31.794;IndelType=D;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A1BG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453054    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:507,39,0
19    58858614    rs67027336    AG    A    282.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=36.6699;IndelType=D;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A1BG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453054    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:324,27,0
19    58858676    rs1265957    A    G    426.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A1BG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453054    GT:AD:DP:GQ:PL    1/1:0,17:17:36.11:459,36,0
19    58863449    rs4801579    C    T    254.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF497;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311044    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:288,21,0
19    58864150    rs6510137    T    C    524.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=30.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF497;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311044    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:557,42,0
19    58864479    rs893184    T    C    1895.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.36;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=H52R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58864294_58864563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A1BG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263100    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1928,153,0
19    58864867    rs2375470    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF497;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311044    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
19    58868480    rs12609654    G    T    283.82    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.857;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.204;QD=14.94;ReadPosRankSum=-0.204;SNPEFF_AMINO_ACID_CHANGE=H174Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58865725_58869015;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF497;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311044    GT:AD:DP:GQ:PL    0/1:9,10:19:99:314,0,316
19    58879965    rs7255489    A    G    33.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_AMINO_ACID_CHANGE=S245;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58878993_58880728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF837;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427624    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
19    58879976    rs7255596    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_AMINO_ACID_CHANGE=A242T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58878993_58880728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF837;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427624    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
19    58899466    rs1529958    A    G    100.77    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.4;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000196551    GT:AD:DP:GQ:PL    0/1:3,4:7:99:131,0,103
19    58906163    rs2241787    T    C    347.85    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.81;MQ0=0;MQRankSum=0.567;QD=9.4;ReadPosRankSum=-0.39;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000196551    GT:AD:DP:GQ:PL    0/1:23,14:37:99:378,0,647
19    58921296    rs34511020    A    G    661.86    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.299;DB;DP=46;Dels=0.0;FS=7.996;HRun=0;HaplotypeScore=1.8311;MQ=60.0;MQ0=0;MQRankSum=2.408;QD=14.39;ReadPosRankSum=0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306910    GT:AD:DP:GQ:PL    0/1:22,24:46:99:692,0,702
19    58927215    rs12986387    C    T    1594.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.821;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.2772;MQ=59.59;MQ0=0;MQRankSum=-0.13;QD=14.23;ReadPosRankSum=0.015;SNPEFF_AMINO_ACID_CHANGE=R100C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58927186_58927307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322834    GT:AD:DP:GQ:PL    0/1:56,56:112:99:1624,0,1630
19    58928299    rs11668757    A    T    304.68    SnpCluster    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.822;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.2;MQ0=0;MQRankSum=-1.278;QD=12.19;ReadPosRankSum=-0.571;SNPEFF_AMINO_ACID_CHANGE=A138;SNPEFF_CODON_CHANGE=gcA/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58928178_58929690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306910    GT:AD:DP:GQ:PL    0/1:13,12:25:99:335,0,390
19    58928302    rs10423138    T    C    738.45    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.71;MQ0=0;QD=27.35;SNPEFF_AMINO_ACID_CHANGE=A139;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58928178_58929690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306910    GT:AD:DP:GQ:PL    1/1:0,27:27:63.19:771,63,0
19    58928309    rs11668789    C    T    233.99    SnpCluster    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.71;MQ0=0;MQRankSum=-1.976;QD=8.67;ReadPosRankSum=-0.171;SNPEFF_AMINO_ACID_CHANGE=P142S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58928178_58929690;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306910    GT:AD:DP:GQ:PL    0/1:15,12:27:99:264,0,438
19    58928786    rs7257872    A    G    735.40    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=47;Dels=0.0;FS=6.357;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.31;QD=15.65;ReadPosRankSum=-0.332;SNPEFF_AMINO_ACID_CHANGE=T160A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58928309_58929110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354635    GT:AD:DP:GQ:PL    0/1:21,26:47:99:765,0,644
19    58929052    rs3764535    G    A    1073.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.04;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.842;QD=30.66;ReadPosRankSum=-0.941;SNPEFF_AMINO_ACID_CHANGE=K248;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58928309_58929110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354635    GT:AD:DP:GQ:PL    1/1:1,34:35:50.65:1106,51,0
19    58929136    rs3764534    G    A    849.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=28.32;SNPEFF_AMINO_ACID_CHANGE=K417;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58928178_58929690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000306910    GT:AD:DP:GQ:PL    1/1:1,29:30:69.20:882,69,0
19    58929194    rs3764533    A    G    570.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;QD=31.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322834    GT:AD:DP:GQ:PL    1/1:0,18:18:45.12:603,45,0
19    58929200    rs35652377    A    C    333.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;MQRankSum=-1.107;QD=18.55;ReadPosRankSum=0.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322834    GT:AD:DP:GQ:PL    0/1:6,12:18:99:364,0,160
19    58929222    rs3764532    G    A    365.33    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9867;MQ=58.45;MQ0=0;MQRankSum=0.072;QD=24.36;ReadPosRankSum=0.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322834    GT:AD:DP:GQ:PL    0/1:3,12:15:85.39:395,0,85
19    58943576    rs34230465    C    G    544.21    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.934;DB;DP=47;Dels=0.0;FS=3.487;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.844;QD=11.58;ReadPosRankSum=0.889;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254166    GT:AD:DP:GQ:PL    0/1:28,19:47:99:574,0,882
19    58945089    rs3764529    A    G    433.02    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.478;DB;DP=45;Dels=0.0;FS=2.729;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.146;QD=9.62;ReadPosRankSum=-1.624;SNPEFF_AMINO_ACID_CHANGE=N289;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58944768_58945209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF132;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391695    GT:AD:DP:GQ:PL    0/1:29,16:45:99:463,0,954
19    58945962    rs9941466    C    T    1329.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=33.25;SNPEFF_AMINO_ACID_CHANGE=K194;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58945866_58946169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF132;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391695    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1363,108,0
19    58946056    rs1465789    G    A    2056.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=32.64;SNPEFF_AMINO_ACID_CHANGE=P163L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58945866_58946169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391695    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2090,157,0
19    58946203    rs1122955    C    T    691.53    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.463;DB;DP=58;Dels=0.0;FS=1.061;HRun=0;HaplotypeScore=0.5784;MQ=59.6;MQ0=0;MQRankSum=0.607;QD=11.92;ReadPosRankSum=-0.59;SNPEFF_AMINO_ACID_CHANGE=G203D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58944182_58946578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000254166    GT:AD:DP:GQ:PL    0/1:30,28:58:99:722,0,971
19    58956888    rs12972898    A    G    1011.10    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=0.495;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=0.621;QD=15.09;ReadPosRankSum=-0.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF584;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354635    GT:AD:DP:GQ:PL    0/1:33,34:67:99:1041,0,1100
19    58962958    rs893188    C    T    712.41    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.134;DB;DP=43;Dels=0.0;FS=6.661;HRun=1;HaplotypeScore=1.5317;MQ=58.48;MQ0=0;MQRankSum=2.301;QD=16.57;ReadPosRankSum=-2.471;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF324B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336614    GT:AD:DP:GQ:PL    0/1:20,23:43:99:742,0,600
19    58963018    rs893187    C    G    585.75    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.281;QD=17.23;ReadPosRankSum=-0.061;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_19_58962971_58963071;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF324B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336614    GT:AD:DP:GQ:PL    0/1:12,22:34:99:616,0,248
19    58982384    rs10418774    A    G    1126.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=R165;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58981890_58983383;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF324;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539101    GT:AD:DP:GQ:PL    1/1:0,33:33:90.27:1159,90,0
19    58983558    rs55875034    T    G    155.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=22.21;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378044    GT:AD:DP:GQ:PL    0/1:2,5:7:62.92:185,0,63
19    58989424    rs731259    C    T    406.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=28;Dels=0.0;FS=8.302;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.364;QD=14.5;ReadPosRankSum=-1.432;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF324;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000196482    GT:AD:DP:GQ:PL    0/1:14,14:28:99:436,0,365
19    58989495    rs893185    A    C    1170.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=29.25;SNPEFF_AMINO_ACID_CHANGE=N192H;SNPEFF_CODON_CHANGE=Aac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58989454_58989548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF446;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335841    GT:AD:DP:GQ:PL    1/1:0,40:40:90.29:1203,90,0
19    58991479    rs882609    G    A    125.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF446;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335841    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:158,12,0
19    58991900    rs882610    G    A    306.24    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.045;DB;DP=21;Dels=0.0;FS=8.022;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.042;QD=14.58;ReadPosRankSum=1.119;SNPEFF_AMINO_ACID_CHANGE=R284H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_58991543_58992591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF446;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391694    GT:AD:DP:GQ:PL    0/1:9,12:21:99:336,0,216
19    58992220    rs3752112    T    G    79.92    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=15.98;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF446;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539679    GT:AD:DP:GQ:PL    0/1:1,4:5:21.40:110,0,21
19    59010593    rs4801274    A    G    559.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7987;MQ=56.25;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263093    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:593,48,0
19    59023166    rs34415062    G    A    116.28    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=14.54;ReadPosRankSum=-0.684;SNPEFF_AMINO_ACID_CHANGE=R53W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_59022635_59023432;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263093    GT:AD:DP:GQ:PL    0/1:3,5:8:52.43:146,0,52
19    59023174    rs35350976    A    G    110.67    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.81;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=M50T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_59022635_59023432;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC27A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263093    GT:AD:DP:GQ:PL    0/1:3,4:7:89.99:141,0,90
19    59025685    rs4801602    A    C    102.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354590    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:135,12,0
19    59028585    rs11545185    G    A    179.32    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.8667;MQ=51.77;MQ0=0;MQRankSum=0.067;QD=19.92;ReadPosRankSum=0.762;SNPEFF_AMINO_ACID_CHANGE=R152;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_59027762_59029040;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB45;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354590    GT:AD:DP:GQ:PL    0/1:2,7:9:49.94:209,0,50
19    59056752    rs2305122    G    C    796.49    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.653;DB;DP=67;Dels=0.0;FS=2.63;HRun=0;HaplotypeScore=1.8824;MQ=58.96;MQ0=0;MQRankSum=0.159;QD=11.89;ReadPosRankSum=0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIM28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253024    GT:AD:DP:GQ:PL    0/1:38,29:67:99:826,0,966
19    59058693    rs3816329    G    A    474.80    PASS    AB=0.217;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.99;MQ0=0;MQRankSum=-0.932;QD=20.64;ReadPosRankSum=2.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312547    GT:AD:DP:GQ:PL    0/1:5,18:23:99:505,0,145
19    59059359    rs182151126    C    A    405.20    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.807;DB;DP=39;Dels=0.0;FS=4.095;HRun=0;HaplotypeScore=3.1989;MQ=58.81;MQ0=0;MQRankSum=0.448;QD=10.39;ReadPosRankSum=-0.986;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHMP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312547    GT:AD:DP:GQ:PL    0/1:23,16:39:99:435,0,833
19    59067623    rs2305119    C    T    597.48    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.59;DB;DP=62;Dels=0.0;FS=10.015;HRun=1;HaplotypeScore=0.9332;MQ=58.95;MQ0=0;MQRankSum=0.149;QD=9.64;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2M;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253023    GT:AD:DP:GQ:PL    0/1:34,28:62:99:627,0,873
19    59074653    rs4756    T    C    53.27    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=6.66;ReadPosRankSum=0.684;SNPEFF_AMINO_ACID_CHANGE=I331V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_59073285_59074871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MZF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215057    GT:AD:DP:GQ:PL    0/1:5,3:8:83.26:83,0,135
19    59082605    rs3752109    C    T    266.33    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.898;QD=26.63;ReadPosRankSum=-1.733;SNPEFF_AMINO_ACID_CHANGE=R51H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_19_59082361_59082796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MZF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215057    GT:AD:DP:GQ:PL    0/1:2,8:10:15.56:296,0,16
19    59093464    rs7910    C    T    513.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=36.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016629.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479047    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:547,42,0
19    59093484    rs3499    G    T    428.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.92;MQ0=0;QD=23.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC016629.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479047    GT:AD:DP:GQ:PL    1/1:0,18:18:36.10:461,36,0
20    76962    rs6111385    T    C    1870.58    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.081;DB;DP=147;Dels=0.0;FS=2.933;HRun=1;HaplotypeScore=4.1222;MQ=59.69;MQ0=0;MQRankSum=-1.422;QD=12.73;ReadPosRankSum=-1.331;SNPEFF_AMINO_ACID_CHANGE=S125;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_76646_77174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB125;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382410    GT:AD:DP:GQ:PL    0/1:75,72:147:99:1901,0,2440
20    126155    rs11467497    GCAAA    G    850.47    PASS    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=4.506;DB;DP=64;FS=1.091;HRun=0;HaplotypeScore=283.2163;IndelType=D;MQ=58.55;MQ0=0;MQRankSum=-0.249;QD=13.29;ReadPosRankSum=0.017;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_20_126056_126392;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB126;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000382398    GT:AD:DP:GQ:PL    0/1:47,17:64:99:890,0,2949
20    126310    rs11468374    ACC    A    3144.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.0;HRun=5;HaplotypeScore=327.0929;IndelType=D;MQ=58.05;MQ0=1;QD=38.83;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_20_126056_126392;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB126;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000382398    GT:AD:DP:GQ:PL    1/1:3,78:80:99:3187,229,0
20    137933    rs1434790    C    G    84.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB127;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382388    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
20    138004    rs6055356    G    C    219.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.4;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB127;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382388    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:253,18,0
20    138178    rs73611777    GC    G    2524.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=2;HaplotypeScore=169.4582;IndelType=D;MQ=60.35;MQ0=0;QD=37.68;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_20_138111_138234;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB127;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382388    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2566,199,0
20    139362    rs6055460    G    A    727.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB127;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382388    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:761,54,0
20    139745    rs4142304    T    C    281.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB127;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382388    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
20    139841    rs4142303    A    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB127;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382388    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
20    168401    .    T    C    171.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=21.45;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334391    GT:AD:DP:GQ:PL    0/1:2,6:8:58.58:202,0,59
20    168466    rs4813042    T    A    572.45    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.565;QD=17.35;ReadPosRankSum=0.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334391    GT:AD:DP:GQ:PL    0/1:14,19:33:99:602,0,456
20    168728    rs4813043    T    A    4018.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.2241;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=K27N;SNPEFF_CODON_CHANGE=aaA/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_168494_168759;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB128;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334391    GT:AD:DP:GQ:PL    1/1:0,114:115:99:4018,295,0
20    207889    rs2298149    G    A    677.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.756;DB;DP=42;Dels=0.0;FS=20.801;HRun=1;HaplotypeScore=1.7219;MQ=59.45;MQ0=0;MQRankSum=-0.126;QD=16.12;ReadPosRankSum=-0.576;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246105    GT:AD:DP:GQ:PL    0/1:21,21:42:99:707,0,615
20    208168    rs6110460    T    C    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB129;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246105    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:72,0,66
20    210061    rs13045643    G    A    754.92    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.869;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.156;QD=13.24;ReadPosRankSum=-0.074;SNPEFF_AMINO_ACID_CHANGE=L67;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_209919_210527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB129;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246105    GT:AD:DP:GQ:PL    0/1:30,27:57:99:785,0,1006
20    238435    rs66489228    CTGGTCT    C    599.66    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=4.0;DB;DP=23;FS=1.674;HRun=0;HaplotypeScore=149.2039;IndelType=D;MQ=49.3;MQ0=0;MQRankSum=-4.062;QD=26.07;ReadPosRankSum=1.457;SNPEFF_AMINO_ACID_CHANGE=LVL6L;SNPEFF_CODON_CHANGE=ctggtcttg/ctg;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_20_238377_238477;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382376    GT:AD:DP:GQ:PL    0/1:14,9:23:99:639,0,1323
20    238507    rs373225    A    C    67.63    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.067;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.61;MQ0=0;MQRankSum=-3.067;QD=4.83;ReadPosRankSum=-0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382376    GT:AD:DP:GQ:PL    0/1:9,5:14:97.63:98,0,280
20    238530    rs412143    T    G    43.23    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-2.054;QD=4.8;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382376    GT:AD:DP:GQ:PL    0/1:6,3:9:73.22:73,0,203
20    238540    rs416360    C    T    43.24    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-2.166;QD=4.32;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382376    GT:AD:DP:GQ:PL    0/1:7,3:10:73.23:73,0,197
20    239664    rs420525    T    C    119.41    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.05;DB;DP=17;Dels=0.0;FS=2.663;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.854;QD=7.02;ReadPosRankSum=-1.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382376    GT:AD:DP:GQ:PL    0/1:11,6:17:99:149,0,325
20    239688    rs399083    G    A    390.62    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.232;DB;DP=25;Dels=0.0;FS=2.395;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.39;QD=15.62;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382376    GT:AD:DP:GQ:PL    0/1:11,14:25:99:421,0,330
20    239697    rs399094    G    C    415.16    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=15.97;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382376    GT:AD:DP:GQ:PL    0/1:11,15:26:99:445,0,353
20    256573    rs6075567    A    G    890.94    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=60;Dels=0.0;FS=9.206;HRun=1;HaplotypeScore=1.5661;MQ=60.0;MQ0=0;MQRankSum=-0.117;QD=14.85;ReadPosRankSum=1.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400269    GT:AD:DP:GQ:PL    0/1:31,29:60:99:921,0,905
20    256727    rs3827147    T    A    1549.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_AMINO_ACID_CHANGE=I270F;SNPEFF_CODON_CHANGE=Att/Ttt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_256609_256727;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382369    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1582,120,0
20    256866    rs3827149    G    A    285.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400269    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:319,24,0
20    256886    rs3827150    A    G    34.34    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.87;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400269    GT:AD:DP:GQ:PL    0/1:2,3:5:64.33:64,0,71
20    257295    .    G    A    52.75    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    257320    rs2277779    G    A    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
20    257733    rs2277781    A    G    5026.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9958;MQ=59.86;MQ0=0;QD=30.28;SNPEFF_AMINO_ACID_CHANGE=S201;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_257685_257786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400269    GT:AD:DP:GQ:PL    1/1:0,165:166:99:5026,382,0
20    257803    rs6075583    G    C    1293.05    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.607;DB;DP=100;Dels=0.0;FS=7.468;HRun=0;HaplotypeScore=3.7092;MQ=59.54;MQ0=0;MQRankSum=0.202;QD=12.93;ReadPosRankSum=-1.438;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:46,54:100:99:1323,0,1531
20    257812    rs6046375    T    C    3179.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6671;MQ=59.48;MQ0=0;QD=36.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    1/1:0,87:88:99:3213,247,0
20    258191    rs6132242    C    G    306.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:340,27,0
20    258215    rs6136878    G    A    159.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
20    258820    rs8117412    T    C    386.17    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.219;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.096;QD=20.32;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:6,13:19:99:416,0,197
20    258865    rs6046492    A    G    1457.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1491,126,0
20    259156    rs6035505    G    A    360.71    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.663;MQ=58.78;MQ0=0;MQRankSum=1.032;QD=18.98;ReadPosRankSum=0.784;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:8,11:19:99:391,0,263
20    259818    rs6035541    G    A    66.96    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=16.74;ReadPosRankSum=-0.727;SNPEFF_AMINO_ACID_CHANGE=L119;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_259813_259971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382369    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:97,0,26
20    259969    rs7271033    G    C    136.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_AMINO_ACID_CHANGE=T103;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_259813_259971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:169,15,0
20    264472    rs41279018    G    A    116.76    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.68;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:2,5:7:55.77:147,0,56
20    264498    rs6137055    A    C    101.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.143;QD=9.25;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:6,5:11:99:132,0,216
20    270414    rs11478105    TC    T    197.70    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=69.3801;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=16.47;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:5,7:12:99:237,0,189
20    270428    rs6035784    C    T    307.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:341,27,0
20    270775    rs6047276    G    A    109.30    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.61;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:3,4:7:86.34:139,0,86
20    271135    rs3215551    G    GC    241.75    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=22;FS=4.32;HRun=1;HaplotypeScore=118.9607;IndelType=I;MQ=52.17;MQ0=0;MQRankSum=0.656;QD=10.99;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:13,9:22:99:281,0,407
20    271225    rs3835237    T    TA    299.28    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.99;DB;DP=36;FS=0.0;HRun=1;HaplotypeScore=189.7677;IndelType=I;MQ=53.34;MQ0=0;MQRankSum=0.648;QD=8.09;ReadPosRankSum=-0.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf96;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360321    GT:AD:DP:GQ:PL    0/1:17,14:36:99:338,0,137
20    278806    rs1057189    C    T    180.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.604;DB;DP=24;Dels=0.0;FS=2.126;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.126;QD=7.52;ReadPosRankSum=-1.058;SNPEFF_AMINO_ACID_CHANGE=S193;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_277737_280965;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382352    GT:AD:DP:GQ:PL    0/1:15,9:24:99:211,0,440
20    279483    rs1046560    T    C    396.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.42;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZCCHC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382352    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:429,33,0
20    334317    rs5839855    TC    T    1015.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DB;DP=40;FS=0.0;HRun=6;HaplotypeScore=113.3672;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=0.545;QD=25.38;ReadPosRankSum=1.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NRSN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470439    GT:AD:DP:GQ:PL    1/1:6,34:40:65.78:1057,66,0
20    368905    rs2295490    A    G    304.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.209;DB;DP=28;Dels=0.0;FS=3.646;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.766;QD=10.89;ReadPosRankSum=0.998;SNPEFF_AMINO_ACID_CHANGE=Q111R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_368655_368945;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000422053    GT:AD:DP:GQ:PL    0/1:16,12:28:99:335,0,557
20    371972    rs6051637    T    C    371.76    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.65;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.135;QD=8.26;ReadPosRankSum=2.306;SNPEFF_AMINO_ACID_CHANGE=Y111;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_371931_372223;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217233    GT:AD:DP:GQ:PL    0/1:28,17:45:99:402,0,792
20    377226    rs6115830    C    T    737.64    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.493;DB;DP=55;Dels=0.0;FS=8.554;HRun=0;HaplotypeScore=0.8667;MQ=59.58;MQ0=0;MQRankSum=-2.225;QD=13.41;ReadPosRankSum=-0.078;SNPEFF_AMINO_ACID_CHANGE=A323;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_376842_378203;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217233    GT:AD:DP:GQ:PL    0/1:29,26:55:99:768,0,883
20    390310    rs6139104    A    T    158.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.493;QD=12.19;ReadPosRankSum=0.555;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465226    GT:AD:DP:GQ:PL    0/1:7,6:13:99:188,0,253
20    391025    rs6139109    T    C    1656.51    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.125;DB;DP=124;Dels=0.0;FS=2.386;HRun=0;HaplotypeScore=4.8235;MQ=59.81;MQ0=0;MQRankSum=0.131;QD=13.36;ReadPosRankSum=-0.997;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465226    GT:AD:DP:GQ:PL    0/1:64,59:124:99:1686,0,1914
20    391330    .    C    T    75.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.51;ReadPosRankSum=1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465226    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,104
20    397928    rs6115906    C    T    36.03    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-2.017;QD=3.28;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=R78C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_397864_397986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBCK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400243    GT:AD:DP:GQ:PL    0/1:4,7:11:66.03:66,0,145
20    398039    rs67707964    TTG    T    110.23    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;FS=9.7;HRun=0;HaplotypeScore=29.9981;IndelType=D;MQ=63.93;MQ0=0;MQRankSum=0.684;QD=13.78;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353660    GT:AD:DP:GQ:PL    0/1:2,5:8:95.63:149,0,96
20    399761    rs959093    G    A    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411647    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
20    399829    rs57454310    G    A    102.95    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.16;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411647    GT:AD:DP:GQ:PL    0/1:2,4:6:63.02:133,0,63
20    402963    .    TTTTC    T    830.60    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.416;DP=40;FS=0.0;HRun=0;HaplotypeScore=210.574;IndelType=D;MQ=57.05;MQ0=0;MQRankSum=-2.24;QD=20.76;ReadPosRankSum=-0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400243    GT:AD:DP:GQ:PL    0/1:28,12:40:99:870,0,672
20    419067    rs3746794    C    T    380.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461188    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:413,30,0
20    428767    rs6139203    A    C    388.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TBC1D20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246077    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:421,33,0
20    464502    rs1056976    G    T    54.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.17;MQ0=1;QD=10.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460062    GT:AD:DP:GQ:PL    1/1:0,5:5:9.01:87,9,0
20    476285    rs157816    C    T    162.10    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=12.47;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217244    GT:AD:DP:GQ:PL    0/1:7,6:13:99:192,0,237
20    480602    .    CA    C    112.75    QDFilter2    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=2.307;DP=57;FS=0.0;HRun=18;HaplotypeScore=353.6851;IndelType=D;MQ=53.78;MQ0=0;MQRankSum=0.804;QD=1.98;ReadPosRankSum=0.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK2A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217244    GT:AD:DP:GQ:PL    0/1:34,11:57:62:152,0,62
20    590456    rs282164    A    G    302.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=23.28;SNPEFF_AMINO_ACID_CHANGE=R142;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_590357_591042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246080    GT:AD:DP:GQ:PL    1/1:0,13:13:27.08:336,27,0
20    629649    rs41282134    T    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381962    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
20    742217    rs3746800    C    G    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=9.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488495    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:70,6,0
20    742237    rs3746801    G    A    71.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.358;QD=14.28;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488495    GT:AD:DP:GQ:PL    0/1:2,3:5:30.19:101,0,30
20    742239    rs6054589    T    C    132.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=26.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488495    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:165,15,0
20    744050    rs8122335    A    G    338.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488495    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:371,27,0
20    744450    rs3746805    G    A    881.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=L255;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_744142_744647;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf54;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217254    GT:AD:DP:GQ:PL    1/1:0,28:28:69.22:915,69,0
20    744662    rs3833341    A    ACAGGTCAAT    628.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=23.5793;IndelType=I;MQ=33.36;MQ0=0;QD=125.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488495    GT:AD:DP:GQ:PL    1/1:0,3:5:15.05:671,15,0
20    744663    .    C    T    47.39    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.358;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.36;MQ0=0;MQRankSum=1.231;QD=9.48;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488495    GT:AD:DP:GQ:PL    1/1:3,2:5:6.02:79,6,0
20    825678    rs538094    T    C    132.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.43;SNPEFF_AMINO_ACID_CHANGE=F77;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_825351_826922;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM110A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246100    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
20    853435    rs112451128    T    G    319.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.66;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381922    GT:AD:DP:GQ:PL    1/1:0,12:12:30.08:353,30,0
20    854754    rs944109    A    G    56.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=9.44;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381922    GT:AD:DP:GQ:PL    0/1:3,3:6:86.63:87,0,96
20    861853    rs6086328    G    A    242.05    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=1.328;DB;DP=43;Dels=0.0;FS=7.684;HRun=1;HaplotypeScore=1.8899;MQ=56.92;MQ0=0;MQRankSum=1.184;QD=5.63;ReadPosRankSum=-0.375;SNPEFF_AMINO_ACID_CHANGE=V304;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_861814_861929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381922    GT:AD:DP:GQ:PL    0/1:29,14:43:99:272,0,789
20    870867    rs76996146    T    C    264.52    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.394;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.557;MQ=59.32;MQ0=0;MQRankSum=0.172;QD=7.78;ReadPosRankSum=-0.057;SNPEFF_AMINO_ACID_CHANGE=M152V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_870856_871011;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANGPT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381922    GT:AD:DP:GQ:PL    0/1:22,12:34:99:295,0,547
20    1099199    rs2072964    A    G    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333082    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    1099329    rs2072962    A    G    207.38    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=18.85;ReadPosRankSum=1.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333082    GT:AD:DP:GQ:PL    0/1:3,8:11:85.59:237,0,86
20    1099523    rs1803415    T    G    420.99    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=31;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=3.4141;MQ=54.56;MQ0=0;MQRankSum=-0.083;QD=13.58;ReadPosRankSum=0.581;SNPEFF_AMINO_ACID_CHANGE=F36C;SNPEFF_CODON_CHANGE=tTc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1099241_1099545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246015    GT:AD:DP:GQ:PL    0/1:16,15:31:99:451,0,448
20    1099666    rs2072961    G    C    67.81    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=7.53;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246015    GT:AD:DP:GQ:PL    0/1:5,4:9:97.80:98,0,189
20    1108262    rs6040024    C    G    65    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.909;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.071;QD=4.64;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246015    GT:AD:DP:GQ:PL    0/1:10,4:14:95:95,0,352
20    1115919    rs2235587    A    G    569.67    PASS    AB=0.306;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.432;DB;DP=36;Dels=0.0;FS=1.562;HRun=0;HaplotypeScore=0.9996;MQ=59.36;MQ0=0;MQRankSum=0.134;QD=15.82;ReadPosRankSum=0.21;SNPEFF_AMINO_ACID_CHANGE=H174R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1115764_1115949;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246015    GT:AD:DP:GQ:PL    0/1:11,25:36:99:600,0,268
20    1210647    rs450739    T    C    5838.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.499;DB;DP=195;Dels=0.0;FS=3.346;HRun=0;HaplotypeScore=3.3382;MQ=59.65;MQ0=0;MQRankSum=-1.406;QD=29.94;ReadPosRankSum=-1.17;SNPEFF_AMINO_ACID_CHANGE=C90R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1210524_1210653;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD21L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381882    GT:AD:DP:GQ:PL    1/1:2,193:195:99:5839,424,0
20    1214814    rs203534    A    C    1667.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=I152L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1214729_1214835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD21L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381882    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1700,123,0
20    1221171    rs970084    G    A    1135.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD21L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381882    GT:AD:DP:GQ:PL    1/1:0,29:29:87.29:1168,87,0
20    1277099    rs6078493    G    A    72.50    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.386;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.6651;MQ=58.2;MQ0=0;MQRankSum=-0.077;QD=5.58;ReadPosRankSum=0.386;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD21L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381882    GT:AD:DP:GQ:PL    0/1:9,4:13:99:102,0,266
20    1277157    rs6109320    G    C    393.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAD21L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381882    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:427,33,0
20    1285549    rs35467629    G    A    736.98    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.875;DB;DP=52;Dels=0.0;FS=1.24;HRun=0;HaplotypeScore=1.7262;MQ=58.66;MQ0=0;MQRankSum=-0.009;QD=14.17;ReadPosRankSum=0.688;SNPEFF_AMINO_ACID_CHANGE=T112;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1285522_1289972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNPH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381873    GT:AD:DP:GQ:PL    0/1:27,25:52:99:767,0,720
20    1285933    rs3795139    G    A    74.97    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.536;QD=5.77;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=G240;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1285522_1289972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNPH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381873    GT:AD:DP:GQ:PL    0/1:9,4:13:99:105,0,225
20    1291018    rs11449    G    A    275.65    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.457;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.794;QD=13.13;ReadPosRankSum=1.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381867    GT:AD:DP:GQ:PL    0/1:10,11:21:99:306,0,264
20    1291076    rs1048628    G    C    205.55    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=2.068;DB;DP=25;Dels=0.0;FS=1.721;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.029;QD=8.22;ReadPosRankSum=0.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381867    GT:AD:DP:GQ:PL    0/1:17,8:25:99:236,0,449
20    1291393    rs2273956    A    G    567.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=29.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381867    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:601,48,0
20    1292964    rs4814110    T    C    228.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381867    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:262,21,0
20    1293008    rs2273958    C    T    55.12    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=11;Dels=0.0;FS=6.455;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.386;QD=5.01;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=V150;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1292981_1293152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381808    GT:AD:DP:GQ:PL    0/1:7,4:11:85.11:85,0,208
20    1298794    rs6078610    G    A    258.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDCBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339987    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:292,21,0
20    1356261    rs6074549    G    C    1259.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.95;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FKBP1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381715    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1293,99,0
20    1424303    rs6891    G    A    62.38    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.91;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NSFL1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381653    GT:AD:DP:GQ:PL    0/1:4,3:7:92.37:92,0,116
20    1426393    rs9575    C    T    1613.14    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=4.911;DB;DP=113;Dels=0.0;FS=10.622;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=1.723;QD=14.28;ReadPosRankSum=1.257;SNPEFF_AMINO_ACID_CHANGE=D179N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1426311_1426475;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NSFL1C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381658    GT:AD:DP:GQ:PL    0/1:60,53:113:99:1643,0,1582
20    1435905    rs6042377    T    C    699.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NSFL1C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487086    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:733,57,0
20    1457045    rs6042499    T    G    95.26    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.66;MQ0=0;MQRankSum=2.072;QD=9.53;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SIRPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381628    GT:AD:DP:GQ:PL    0/1:6,4:10:99:125,0,204
20    1458876    rs6042506    C    T    273.19    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.4;DB;DP=24;Dels=0.0;FS=5.076;HRun=0;HaplotypeScore=0.8321;MQ=58.05;MQ0=0;MQRankSum=-0.031;QD=11.38;ReadPosRankSum=0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SIRPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359801    GT:AD:DP:GQ:PL    0/1:12,12:24:99:303,0,365
20    1459060    rs6042507    T    G    2066.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.63;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=E117A;SNPEFF_CODON_CHANGE=gAg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1458911_1459252;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SIRPB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381628    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2100,162,0
20    1471903    rs958839    A    G    241.06    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.939;QD=12.69;ReadPosRankSum=-0.204;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SIRPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359801    GT:AD:DP:GQ:PL    0/1:10,9:19:99:271,0,326
20    1517979    rs2256229    G    A    1550.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381621    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1584,117,0
20    1518100    rs10485824    G    A    134.98    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.5;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381621    GT:AD:DP:GQ:PL    0/1:1,5:6:24.18:165,0,24
20    1518155    rs2256240    T    C    35.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=11.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381621    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:66,6,0
20    1532595    rs2249317    T    C    1290.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=60.0;MQ0=0;QD=28.67;SNPEFF_AMINO_ACID_CHANGE=N55D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1532337_1532684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381621    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1323,102,0
20    1538249    rs2250055    C    T    272.27    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.321;DB;DP=27;Dels=0.0;FS=3.699;HRun=0;HaplotypeScore=0.9997;MQ=59.14;MQ0=0;MQRankSum=0.074;QD=10.08;ReadPosRankSum=1.209;SNPEFF_AMINO_ACID_CHANGE=L17;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1538227_1538351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381621    GT:AD:DP:GQ:PL    0/1:16,11:27:99:302,0,542
20    1538266    rs11697395    G    A    564.71    PASS    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=0.148;DB;DP=28;Dels=0.0;FS=1.631;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.0;QD=20.17;ReadPosRankSum=0.197;SNPEFF_AMINO_ACID_CHANGE=L12;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1538227_1538351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381621    GT:AD:DP:GQ:PL    0/1:9,19:28:99:595,0,297
20    1546742    rs2243602    T    A    202.85    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.555;QD=15.6;ReadPosRankSum=1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262929    GT:AD:DP:GQ:PL    0/1:6,7:13:99:233,0,191
20    1546911    rs2243603    C    G    104.02    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=11.56;ReadPosRankSum=-0.729;SNPEFF_AMINO_ACID_CHANGE=A145P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1546799_1546913;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262929    GT:AD:DP:GQ:PL    0/1:5,4:9:99:134,0,169
20    1551485    rs2254458    C    T    4071.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5239;MQ=59.03;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=A350;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1551451_1551783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381605    GT:AD:DP:GQ:PL    1/1:0,115:115:99:4071,304,0
20    1552430    rs2253427    T    C    2126.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.815;MQ=59.38;MQ0=0;QD=35.45;SNPEFF_AMINO_ACID_CHANGE=I229M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1552366_1552683;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381605    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2160,157,0
20    1559259    rs2746603    C    T    1291.77    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DB;DP=101;Dels=0.0;FS=6.671;HRun=0;HaplotypeScore=2.7286;MQ=59.08;MQ0=0;MQRankSum=0.394;QD=12.79;ReadPosRankSum=-0.336;SNPEFF_AMINO_ACID_CHANGE=R52H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1558984_1559340;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262929    GT:AD:DP:GQ:PL    0/1:53,48:101:99:1322,0,1450
20    1615959    rs9305125    T    C    2026.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=L312;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1615913_1616245;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381580    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2060,153,0
20    1616137    rs6034239    G    A    1694.45    PASS    AB=0.356;AC=1;AF=0.50;AN=2;BaseQRankSum=0.875;DB;DP=87;Dels=0.0;FS=3.288;HRun=1;HaplotypeScore=0.8941;MQ=59.74;MQ0=0;MQRankSum=0.122;QD=19.48;ReadPosRankSum=1.693;SNPEFF_AMINO_ACID_CHANGE=S253L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1615913_1616245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381580    GT:AD:DP:GQ:PL    0/1:31,56:87:99:1724,0,907
20    1616206    rs6043409    A    G    1160.59    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.362;DB;DP=68;Dels=0.0;FS=0.998;HRun=0;HaplotypeScore=0.9992;MQ=59.66;MQ0=0;MQRankSum=-0.553;QD=17.07;ReadPosRankSum=-0.032;SNPEFF_AMINO_ACID_CHANGE=V230A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1615913_1616245;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381580    GT:AD:DP:GQ:PL    0/1:28,40:68:99:1191,0,810
20    1616892    rs2277760    A    G    581.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=44;Dels=0.0;FS=6.514;HRun=0;HaplotypeScore=0.7887;MQ=59.48;MQ0=0;MQRankSum=0.887;QD=13.22;ReadPosRankSum=0.935;SNPEFF_AMINO_ACID_CHANGE=H197;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1616834_1617151;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381580    GT:AD:DP:GQ:PL    0/1:22,22:44:99:612,0,708
20    1617163    rs41275438    G    T    211.89    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.527;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.477;QD=7.85;ReadPosRankSum=0.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216927    GT:AD:DP:GQ:PL    0/1:17,10:27:99:242,0,560
20    1629547    rs6110775    T    C    354.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216927    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:388,30,0
20    1629604    rs6074948    A    C    802.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216927    GT:AD:DP:GQ:PL    1/1:1,22:23:66.21:836,66,0
20    1629606    rs6110777    A    G    803.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216927    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:837,66,0
20    1629906    rs6079967    C    T    695.53    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=0.438;DB;DP=53;Dels=0.0;FS=5.752;HRun=0;HaplotypeScore=0.9832;MQ=58.68;MQ0=0;MQRankSum=0.152;QD=13.12;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=R41;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1629698_1630054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381580    GT:AD:DP:GQ:PL    0/1:29,24:53:99:726,0,907
20    1638231    rs66989667    G    A    470.56    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=0.835;DB;DP=23;Dels=0.0;FS=2.793;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=20.46;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216927    GT:AD:DP:GQ:PL    0/1:7,16:23:99:501,0,211
20    1915226    rs2076554    G    A    247.19    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=19.01;ReadPosRankSum=0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIRPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356025    GT:AD:DP:GQ:PL    0/1:5,8:13:99:277,0,163
20    1961134    rs6045819    A    G    1238.76    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.763;DB;DP=102;Dels=0.0;FS=6.52;HRun=0;HaplotypeScore=0.9665;MQ=59.77;MQ0=0;MQRankSum=0.003;QD=12.14;ReadPosRankSum=1.473;SNPEFF_AMINO_ACID_CHANGE=H200;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1959405_1961604;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDYN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217305    GT:AD:DP:GQ:PL    0/1:53,49:102:99:1269,0,1510
20    1961298    rs77155664    T    G    1140.83    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.032;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=59.05;MQ0=0;MQRankSum=1.824;QD=15.63;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=M146L;SNPEFF_CODON_CHANGE=Atg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_1959405_1961604;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDYN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217305    GT:AD:DP:GQ:PL    0/1:35,38:73:99:1171,0,1043
20    1963413    rs6035222    G    A    106.50    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.3;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDYN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217305    GT:AD:DP:GQ:PL    0/1:1,4:5:20.21:136,0,20
20    2290333    rs214803    C    A    4706.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.83;MQ0=0;QD=34.87;SNPEFF_AMINO_ACID_CHANGE=T13K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2290303_2290476;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381458    GT:AD:DP:GQ:PL    1/1:0,135:135:99:4707,346,0
20    2290532    rs214804    T    G    664.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.77;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381458    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:697,54,0
20    2290547    rs214805    C    T    613.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381458    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:647,51,0
20    2291888    rs214806    A    T    669.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381458    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:702,57,0
20    2313043    rs45512503    G    A    42.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.05;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381458    GT:AD:DP:GQ:PL    0/1:1,2:3:14.67:72,0,15
20    2313059    rs2076408    T    G    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381458    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
20    2315929    rs2076406    C    T    345.28    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=33;Dels=0.0;FS=10.268;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-0.247;QD=10.46;ReadPosRankSum=-0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381458    GT:AD:DP:GQ:PL    0/1:19,14:33:99:375,0,466
20    2321105    rs214830    G    C    840.30    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.996;DB;DP=60;Dels=0.0;FS=7.023;HRun=0;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;MQRankSum=0.223;QD=14.01;ReadPosRankSum=-1.783;SNPEFF_AMINO_ACID_CHANGE=G654R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2321080_2321724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381458    GT:AD:DP:GQ:PL    0/1:27,33:60:99:870,0,884
20    2361684    rs2422753    C    T    83.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
20    2375262    rs2076405    A    G    173.29    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.457;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.05;QD=10.19;ReadPosRankSum=0.352;SNPEFF_AMINO_ACID_CHANGE=M58V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2375098_2375271;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:11,6:17:99:203,0,372
20    2376963    rs6048642    T    A    81.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:111,0,29
20    2380396    rs2076404    G    A    116.49    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.977;QD=9.71;ReadPosRankSum=-1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:7,5:12:99:146,0,221
20    2398017    rs2295077    G    A    186.60    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.228;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.228;QD=9.33;ReadPosRankSum=1.823;SNPEFF_AMINO_ACID_CHANGE=K492;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2397878_2398219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:11,9:20:99:217,0,331
20    2410952    rs2076649    C    T    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
20    2411792    rs7269048    C    T    100.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=12.57;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:4,4:8:99:131,0,138
20    2413020    rs2076654    G    A    229.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=22;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.9332;MQ=58.95;MQ0=0;MQRankSum=-0.449;QD=10.44;ReadPosRankSum=-0.449;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:11,11:22:99:260,0,288
20    2413125    rs2076653    C    T    64.93    QDFilter2    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=47;Dels=0.0;FS=2.985;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.132;QD=1.38;ReadPosRankSum=-0.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:25,22:47:94.92:95,0,781
20    2413126    rs6036467    C    T    930.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.205;DB;DP=47;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9983;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=19.81;ReadPosRankSum=1.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    1/1:1,46:47:67.46:964,67,0
20    2413320    rs2076652    T    C    927.30    PASS    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=62;Dels=0.0;FS=1.11;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.501;QD=14.96;ReadPosRankSum=-2.419;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202625    GT:AD:DP:GQ:PL    0/1:23,39:62:99:957,0,710
20    2442273    rs6049216    C    A    156.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303103    GT:AD:DP:GQ:PL    1/1:0,5:6:15.03:189,15,0
20    2474081    rs4815270    T    C    619.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNF343;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278772    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:653,54,0
20    2539387    rs6050063    G    A    128.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.869;DB;DP=12;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.73;ReadPosRankSum=-1.073;SNPEFF_AMINO_ACID_CHANGE=R123K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2539102_2539420;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:6,6:12:99:159,0,213
20    2539568    rs4815320    T    A    71.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.88;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,100
20    2542669    rs7270277    C    T    411.74    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.29;DB;DP=28;Dels=0.0;FS=17.486;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.369;QD=14.7;ReadPosRankSum=-1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:15,13:28:99:442,0,476
20    2542747    rs4815323    G    T    179.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=16.28;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:4,6:11:99:209,0,132
20    2552805    rs1883981    T    A    603.08    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.85;DB;DP=42;Dels=0.0;FS=3.27;HRun=0;HaplotypeScore=3.9967;MQ=58.89;MQ0=0;MQRankSum=0.644;QD=14.36;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:19,23:42:99:633,0,415
20    2552926    rs1883980    T    C    611.65    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.282;DB;DP=36;Dels=0.0;FS=2.795;HRun=0;HaplotypeScore=2.1445;MQ=58.71;MQ0=0;MQRankSum=1.054;QD=16.99;ReadPosRankSum=-0.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:13,23:36:99:642,0,411
20    2559778    rs6083735    G    C    101.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.041;DB;DP=16;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=4.9789;MQ=58.43;MQ0=0;MQRankSum=-1.164;QD=6.36;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:10,5:16:99:132,0,259
20    2572816    rs6050433    T    G    74.61    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=14.92;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:2,3:5:65.60:105,0,66
20    2582599    rs146873550    T    C    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,70
20    2593006    rs1015159    A    G    656.88    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DB;DP=49;Dels=0.0;FS=6.29;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=13.41;ReadPosRankSum=-1.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:23,26:49:99:687,0,745
20    2596969    rs4621228    T    A    160.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.02;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:4,6:10:99:190,0,125
20    2596998    rs4481063    G    A    137.61    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.729;QD=15.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:4,5:9:99:168,0,130
20    2597978    rs4815428    G    A    389.47    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.029;DB;DP=29;Dels=0.0;FS=1.752;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=2.335;QD=13.43;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:12,17:29:99:419,0,316
20    2598019    rs6083866    C    T    326.40    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.583;DB;DP=20;Dels=0.0;FS=5.815;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.608;QD=16.32;ReadPosRankSum=0.228;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:9,11:20:99:356,0,227
20    2616556    rs910271    T    C    377.04    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.628;DB;DP=30;Dels=0.0;FS=3.905;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.13;QD=12.57;ReadPosRankSum=0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:17,13:30:99:407,0,544
20    2616679    rs2422808    C    G    372.39    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.994;DB;DP=28;Dels=0.0;FS=4.151;HRun=2;HaplotypeScore=0.9973;MQ=59.17;MQ0=0;MQRankSum=-0.184;QD=13.3;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:15,13:28:99:402,0,455
20    2617993    rs6083914    C    T    71.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=11.88;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:3,3:6:68.83:101,0,69
20    2618094    rs6037181    G    A    564.51    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=54.46;MQ0=0;MQRankSum=-0.668;QD=12.01;ReadPosRankSum=-0.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:21,26:47:99:594,0,654
20    2618140    rs6083915    T    C    662.83    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=1.844;DB;DP=53;Dels=0.0;FS=1.077;HRun=1;HaplotypeScore=0.0;MQ=56.42;MQ0=0;MQRankSum=-1.416;QD=12.51;ReadPosRankSum=0.419;SNPEFF_AMINO_ACID_CHANGE=S802;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2618120_2618237;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:28,25:53:99:693,0,808
20    2618308    rs6050771    C    T    191.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=19.13;ReadPosRankSum=1.133;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:4,6:10:99:221,0,113
20    2621998    rs6050798    T    C    199.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=26;Dels=0.0;FS=2.007;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.517;QD=7.66;ReadPosRankSum=1.387;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358864    GT:AD:DP:GQ:PL    0/1:13,13:26:99:229,0,434
20    2633380    rs6115306    G    A    58.28    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8313;MQ=29.99;MQ0=0;MQRankSum=0.361;QD=6.48;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329276    GT:AD:DP:GQ:PL    0/1:5,4:9:27.28:88,0,27
20    2633404    rs6115307    C    G    103.03    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.12;MQ0=0;QD=12.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329276    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:136,12,0
20    2633936    rs2073194    T    C    5179.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7791;MQ=59.71;MQ0=0;QD=32.99;SNPEFF_AMINO_ACID_CHANGE=S35;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2633925_2634039;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329276    GT:AD:DP:GQ:PL    1/1:0,157:157:99:5180,400,0
20    2637071    rs8958    T    C    1491.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8924;MQ=59.57;MQ0=0;QD=27.62;SNPEFF_AMINO_ACID_CHANGE=T345;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2637047_2637195;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOP56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329276    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1524,114,0
20    2644407    rs2073193    C    G    1060.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IDH3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341825    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1093,78,0
20    2739583    rs2073125    T    C    397.79    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.239;DB;DP=24;Dels=0.0;FS=1.685;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.596;QD=16.57;ReadPosRankSum=0.417;SNPEFF_AMINO_ACID_CHANGE=F171;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2739555_2739630;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EBF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539912    GT:AD:DP:GQ:PL    0/1:9,15:24:99:428,0,258
20    2774683    rs215539    G    A    145.38    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.55;MQ0=0;MQRankSum=0.271;QD=11.18;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380605    GT:AD:DP:GQ:PL    0/1:5,8:13:99:175,0,165
20    2775332    rs127078    T    C    487.81    PASS    AB=0.296;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.694;DB;DP=27;Dels=0.0;FS=2.764;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.528;QD=18.07;ReadPosRankSum=-0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380605    GT:AD:DP:GQ:PL    0/1:8,19:27:99:518,0,255
20    2777459    rs1985525    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380605    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    2777828    rs742707    G    T    425.62    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=23;Dels=0.0;FS=7.14;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.032;QD=18.51;ReadPosRankSum=1.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380605    GT:AD:DP:GQ:PL    0/1:8,15:23:99:456,0,223
20    2778075    rs127076    T    C    86.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380605    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
20    2778363    rs215540    C    T    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380605    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
20    2779257    rs215541    G    C    599.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.63;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380605    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:632,48,0
20    2795625    rs215560    G    A    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL035460.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380589    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
20    2796485    rs3830832    C    CCTTTT    2243.12    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.034;DB;DP=68;FS=8.152;HRun=0;HaplotypeScore=275.5315;IndelType=I;MQ=57.19;MQ0=0;MQRankSum=-0.478;QD=32.99;ReadPosRankSum=0.797;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL035460.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380589    GT:AD:DP:GQ:PL    0/1:40,26:68:99:2282,0,1705
20    2797764    rs113610252    AG    A    278.90    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.71;DB;DP=18;FS=0.0;HRun=3;HaplotypeScore=47.1002;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.821;QD=15.49;ReadPosRankSum=0.044;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL035460.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380589    GT:AD:DP:GQ:PL    0/1:8,10:18:99:318,0,292
20    2816821    rs2274669    C    T    307.69    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.014;DB;DP=31;Dels=0.0;FS=2.049;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=9.93;ReadPosRankSum=-1.85;SNPEFF_AMINO_ACID_CHANGE=P276;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2816685_2816960;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM113A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356872    GT:AD:DP:GQ:PL    0/1:16,14:31:99:338,0,504
20    2818801    rs751899    T    C    917.03    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.564;QD=14.56;ReadPosRankSum=0.508;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM113A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439542    GT:AD:DP:GQ:PL    0/1:30,33:63:99:947,0,834
20    2840773    rs3818605    C    T    709.75    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=1.644;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-1.084;QD=16.51;ReadPosRankSum=0.743;SNPEFF_AMINO_ACID_CHANGE=S72;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2840700_2840797;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380445    GT:AD:DP:GQ:PL    0/1:20,23:43:99:740,0,626
20    2842685    rs6051449    A    C    134.39    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=1.799;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.059;QD=8.4;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380445    GT:AD:DP:GQ:PL    0/1:9,7:16:99:164,0,275
20    2844226    rs112081527    T    C    85.80    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=17.16;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417508    GT:AD:DP:GQ:PL    0/1:1,4:5:26.74:116,0,27
20    2844469    rs11473328    G    GAGAA    721.92    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.122;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=244.0508;IndelType=I;MQ=54.23;MQ0=0;MQRankSum=0.288;QD=18.51;ReadPosRankSum=1.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417508    GT:AD:DP:GQ:PL    0/1:26,12:39:99:761,0,760
20    2845130    rs730819    G    A    2133.29    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.26;DB;DP=139;Dels=0.0;FS=0.798;HRun=0;HaplotypeScore=3.2691;MQ=59.67;MQ0=0;MQRankSum=-0.35;QD=15.35;ReadPosRankSum=-0.512;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPS16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417508    GT:AD:DP:GQ:PL    0/1:65,74:139:99:2163,0,1933
20    2996423    rs1178015    T    A    234.03    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=20;Dels=0.0;FS=3.139;HRun=0;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;MQRankSum=0.532;QD=11.7;ReadPosRankSum=-0.912;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216877    GT:AD:DP:GQ:PL    0/1:11,9:20:99:264,0,341
20    2996497    rs1178016    C    T    500.72    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.404;DB;DP=43;Dels=0.0;FS=2.659;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;MQRankSum=0.783;QD=11.64;ReadPosRankSum=-0.303;SNPEFF_AMINO_ACID_CHANGE=G159;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_2996495_2996531;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358719    GT:AD:DP:GQ:PL    0/1:24,19:43:99:531,0,720
20    2996589    rs1178017    G    T    230.43    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.489;DB;DP=24;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.263;QD=9.6;ReadPosRankSum=1.025;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216877    GT:AD:DP:GQ:PL    0/1:14,10:24:99:260,0,476
20    3002889    rs544090    A    C    572.01    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=50;Dels=0.0;FS=7.338;HRun=5;HaplotypeScore=0.734;MQ=59.54;MQ0=0;MQRankSum=-0.039;QD=11.44;ReadPosRankSum=-1.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216877    GT:AD:DP:GQ:PL    0/1:27,23:50:99:602,0,726
20    3003027    rs2277756    T    C    56.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=7.1;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216877    GT:AD:DP:GQ:PL    0/1:5,3:8:86.83:87,0,183
20    3005413    rs568235    G    A    219.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.406;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.78;QD=15.68;ReadPosRankSum=-1.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216877    GT:AD:DP:GQ:PL    0/1:7,7:14:99:250,0,249
20    3007228    rs571058    G    A    70.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=1.231;QD=14.17;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216877    GT:AD:DP:GQ:PL    0/1:2,3:5:51.82:101,0,52
20    3007492    rs599538    T    C    67.48    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.729;QD=7.5;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216877    GT:AD:DP:GQ:PL    0/1:4,5:9:97.47:97,0,139
20    3017674    rs561843    T    G    180.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=12.91;ReadPosRankSum=0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216877    GT:AD:DP:GQ:PL    0/1:7,7:14:99:211,0,217
20    3024914    rs6115764    G    C    132.88    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.15;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNRH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245983    GT:AD:DP:GQ:PL    0/1:1,5:6:13.51:163,0,14
20    3025107    rs6051545    C    T    446.62    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.486;DB;DP=33;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.774;QD=13.53;ReadPosRankSum=0.81;SNPEFF_AMINO_ACID_CHANGE=A16V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3025054_3025214;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNRH2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000245983    GT:AD:DP:GQ:PL    0/1:17,16:33:99:477,0,560
20    3026238    rs6138994    G    T    225.76    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=51.77;MQ0=0;MQRankSum=0.232;QD=9.41;ReadPosRankSum=0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNRH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245983    GT:AD:DP:GQ:PL    0/1:13,11:24:99:256,0,360
20    3026345    rs16996832    A    AGCCCC    216.72    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=26;FS=2.522;HRun=0;HaplotypeScore=196.096;IndelType=I;MQ=52.45;MQ0=0;MQRankSum=-1.929;QD=8.34;ReadPosRankSum=-1.466;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_20_3026332_3026393;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNRH2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000245983    GT:AD:DP:GQ:PL    0/1:20,5:26:99:256,0,475
20    3052951    rs71331038    C    CA    535.18    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=28;FS=3.722;HRun=1;HaplotypeScore=99.8817;IndelType=I;MQ=59.48;MQ0=0;MQRankSum=1.049;QD=19.11;ReadPosRankSum=-0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OXT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217386    GT:AD:DP:GQ:PL    0/1:12,15:28:99:574,0,365
20    3064949    rs2282018    C    T    122.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AVP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380293    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:155,12,0
20    3091127    rs45551643    C    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBOX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217173    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
20    3147024    rs7260750    G    A    250.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-1187M17.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329152    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:284,24,0
20    3147762    rs6051612    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_AMINO_ACID_CHANGE=D16;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3147351_3149207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-1187M17.10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329152    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
20    3171628    rs2295546    G    A    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380201    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
20    3172246    rs2295547    A    C    341.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_AMINO_ACID_CHANGE=F298L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3172070_3172467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380201    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:375,30,0
20    3172584    rs67249524    T    G    415.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354488    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:448,33,0
20    3175260    rs2295548    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354488    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
20    3175556    rs2295549    C    G    397.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354488    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:431,33,0
20    3175694    rs2295550    G    A    260.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354488    GT:AD:DP:GQ:PL    1/1:0,9:9:24.05:293,24,0
20    3175742    rs2295551    A    G    408.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354488    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:442,36,0
20    3176009    rs2295552    T    C    846.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354488    GT:AD:DP:GQ:PL    1/1:0,26:26:66.17:879,66,0
20    3176072    rs7263489    C    T    201.18    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.298;DB;DP=16;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=2.5494;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=12.57;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDRGK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354488    GT:AD:DP:GQ:PL    0/1:6,10:16:99:231,0,206
20    3193978    rs8362    G    A    746.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.175;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.033;QD=12.45;ReadPosRankSum=0.377;SNPEFF_AMINO_ACID_CHANGE=Q29;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3193965_3194029;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ITPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455664    GT:AD:DP:GQ:PL    0/1:30,30:60:99:777,0,913
20    3202764    rs66724923    T    A    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=22.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ITPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460676    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
20    3204084    rs9101    G    A    168.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=11.24;ReadPosRankSum=-1.12;SNPEFF_AMINO_ACID_CHANGE=E146;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3204012_3204516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ITPA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399838    GT:AD:DP:GQ:PL    0/1:9,6:15:99:199,0,318
20    3209371    rs2281575    G    A    54.49    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.248;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.248;QD=6.05;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ITPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380113    GT:AD:DP:GQ:PL    0/1:6,3:9:84.48:84,0,202
20    3210692    rs6139039    A    G    195.69    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=17.79;ReadPosRankSum=-0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437836    GT:AD:DP:GQ:PL    0/1:4,7:11:99:226,0,132
20    3211064    rs3810561    A    C    339.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.357;DB;DP=24;Dels=0.0;FS=6.628;HRun=1;HaplotypeScore=0.8667;MQ=59.03;MQ0=0;MQRankSum=0.606;QD=14.16;ReadPosRankSum=0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437836    GT:AD:DP:GQ:PL    0/1:12,12:24:99:370,0,413
20    3214126    rs3803955    C    T    77.13    PASS    AB=0.826;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.446;DB;DP=23;Dels=0.0;FS=2.682;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.284;QD=3.35;ReadPosRankSum=-1.582;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC4A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380056    GT:AD:DP:GQ:PL    0/1:19,4:23:99:107,0,537
20    3262181    rs17698336    A    G    76.53    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=5.1;ReadPosRankSum=-0.766;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf194;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252032    GT:AD:DP:GQ:PL    0/1:9,6:15:99:107,0,304
20    3285140    rs2422864    T    C    255.38    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.894;DB;DP=30;Dels=0.0;FS=5.649;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.187;QD=8.51;ReadPosRankSum=1.393;SNPEFF_AMINO_ACID_CHANGE=R315G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3285087_3285190;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf194;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453730    GT:AD:DP:GQ:PL    0/1:16,14:30:99:285,0,444
20    3298881    rs113387556    CAA    C    718.26    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.549;DB;DP=54;FS=10.107;HRun=16;HaplotypeScore=388.176;IndelType=D;MQ=50.6;MQ0=0;MQRankSum=0.634;QD=13.3;ReadPosRankSum=1.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf194;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252032    GT:AD:DP:GQ:PL    1/1:4,35:54:79.25:760,79,0
20    3355567    rs2208030    T    C    3126.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.44;MQ0=0;QD=38.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf194;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252032    GT:AD:DP:GQ:PL    1/1:0,82:82:99:3160,235,0
20    3361908    rs2008901    G    A    386.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf194;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252032    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:420,30,0
20    3515924    rs151518    G    A    194.91    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=0.298;DB;DP=29;Dels=0.0;FS=1.585;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.344;QD=6.72;ReadPosRankSum=-0.803;SNPEFF_AMINO_ACID_CHANGE=V145;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3515900_3515983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    0/1:19,10:29:99:225,0,518
20    3515951    rs151519    C    T    121.09    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.477;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=4.84;ReadPosRankSum=3.022;SNPEFF_AMINO_ACID_CHANGE=Y154;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3515900_3515983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    0/1:19,6:25:99:151,0,567
20    3527884    rs239187    G    A    236.21    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=17;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.914;QD=13.89;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    0/1:9,8:17:99:266,0,319
20    3541633    rs235577    A    G    874.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,25:25:75.22:908,75,0
20    3542622    rs235575    C    T    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
20    3553299    rs112874159    TA    T    47.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=16;HaplotypeScore=85.043;IndelType=D;MQ=49.96;MQ0=0;QD=4.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,9:10:14.53:90,15,0
20    3553750    rs464831    T    A    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
20    3557326    rs10623093    A    ATCTGTCTG    807.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=68.1422;IndelType=I;MQ=58.99;MQ0=0;QD=80.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,8:10:30.10:850,30,0
20    3564672    rs235540    C    T    6181.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DB;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=59.48;MQ0=0;MQRankSum=-1.067;QD=34.53;ReadPosRankSum=0.93;SNPEFF_AMINO_ACID_CHANGE=Y890;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3564545_3564730;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340500    GT:AD:DP:GQ:PL    1/1:1,178:179:99:6181,427,0
20    3564772    rs170976    T    A    2476.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=35.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2509,193,0
20    3565546    rs235538    C    G    1421.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1455,108,0
20    3575248    rs235532    G    C    578.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,20:20:51.14:611,51,0
20    3605336    rs2255786    A    G    766.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,21:21:60.18:799,60,0
20    3624704    rs2246799    G    A    1253.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,35:35:96.32:1287,96,0
20    3624830    rs2246808    G    A    2921.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4116;MQ=59.19;MQ0=0;QD=33.97;SNPEFF_AMINO_ACID_CHANGE=P1360;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3624801_3624915;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATRN;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262919    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2955,220,0
20    3641542    rs58634535    G    A    82.55    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=16.51;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=L147;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3641402_3641936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GFRA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319242    GT:AD:DP:GQ:PL    0/1:1,4:5:30.19:113,0,30
20    3643876    rs12624874    C    T    128.85    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=18.41;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350009    GT:AD:DP:GQ:PL    0/1:2,5:7:59.40:159,0,59
20    3649679    rs543749    G    T    728.32    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.132;DB;DP=64;Dels=0.0;FS=5.57;HRun=0;HaplotypeScore=0.9894;MQ=59.28;MQ0=0;MQRankSum=0.188;QD=11.38;ReadPosRankSum=1.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    0/1:37,27:64:99:758,0,1073
20    3649713    rs628965    A    G    1539.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6553;MQ=59.49;MQ0=0;QD=34.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1573,120,0
20    3649721    rs628977    T    C    1290.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=59.41;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1323,102,0
20    3650066    rs630712    C    A    194.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:228,18,0
20    3650127    rs2280089    G    A    73.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.31;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,109
20    3650205    rs2280090    G    A    79.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.79;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=P654S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3650193_3650284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439201    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:109,0,30
20    3650234    rs2280091    A    G    80.95    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.19;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=M644T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3650193_3650284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439201    GT:AD:DP:GQ:PL    0/1:2,3:5:32.73:111,0,33
20    3651742    rs528557    C    G    211.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_AMINO_ACID_CHANGE=G597;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3651653_3651800;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439201    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:245,21,0
20    3651765    rs3918396    C    T    54.58    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.296;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=5.46;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=V590I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3651653_3651800;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439201    GT:AD:DP:GQ:PL    0/1:7,3:10:84.58:85,0,244
20    3652207    rs612709    G    A    127.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.065;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.0;MQ0=0;MQRankSum=1.485;QD=9.1;ReadPosRankSum=-1.097;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    0/1:8,6:14:99:157,0,275
20    3653149    rs3918395    C    A    713.34    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.358;DB;DP=43;Dels=0.0;FS=1.351;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-1.332;QD=16.59;ReadPosRankSum=0.256;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339622    GT:AD:DP:GQ:PL    0/1:17,26:43:99:743,0,546
20    3653587    rs2280092    C    T    70.58    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.08;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    0/1:4,3:7:98.86:101,0,99
20    3654433    rs2271511    C    T    66.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.66;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=G288;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3654392_3654558;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350009    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:97,0,29
20    3655085    rs511898    C    T    566.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:599,45,0
20    3655943    rs2787095    C    G    121.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADAM33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322570    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
20    3670512    rs17701662    A    T    75.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.57;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,108
20    3672323    rs117026083    G    C    163.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=16.33;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:4,6:10:93.27:193,0,93
20    3672389    rs45611736    T    G    110.25    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.38;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:2,4:6:65.40:140,0,65
20    3673815    rs2474436    A    G    178.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=22.25;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:2,6:8:60.80:208,0,61
20    3674064    rs3827110    G    C    266.18    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.615;QD=12.1;ReadPosRankSum=-1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:12,10:22:99:296,0,396
20    3677095    rs11471725    T    TGCTG    509.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.18;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=67.7509;IndelType=I;MQ=52.03;MQ0=0;MQRankSum=0.536;QD=36.38;ReadPosRankSum=-0.929;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:7,6:14:99:548,0,174
20    3677357    rs501538    T    C    1693.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7803;MQ=58.03;MQ0=0;QD=29.72;SNPEFF_AMINO_ACID_CHANGE=K853;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3677233_3677535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1727,135,0
20    3678792    rs41297628    A    C    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    3679703    rs547658    A    G    34.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.65;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:65,0,33
20    3679736    rs75586311    C    T    46.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.74;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:77,0,33
20    3679745    rs75918531    C    T    45.75    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=11.44;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:1,3:4:33.98:76,0,34
20    3682242    rs45472900    C    T    176.46    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=2.898;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.78;MQ0=0;MQRankSum=-0.091;QD=9.29;ReadPosRankSum=-1.63;SNPEFF_AMINO_ACID_CHANGE=A425;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3681989_3682288;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:11,8:19:99:206,0,310
20    3684022    rs611847    A    G    423.25    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.01;DB;DP=27;Dels=0.0;FS=3.707;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.349;QD=15.68;ReadPosRankSum=1.194;SNPEFF_AMINO_ACID_CHANGE=N350;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3683844_3684098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:12,15:27:99:453,0,341
20    3684426    rs1005885    C    T    134.24    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=14;Dels=0.0;FS=2.276;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=9.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:9,5:14:99:164,0,250
20    3684729    rs625372    T    C    327.75    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=1.244;QD=11.71;ReadPosRankSum=0.875;SNPEFF_AMINO_ACID_CHANGE=K239R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3684472_3684738;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:13,15:28:99:358,0,466
20    3686248    rs55742084    A    G    126.87    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=21.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIGLEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202578    GT:AD:DP:GQ:PL    0/1:1,5:6:23.71:157,0,24
20    3719488    rs11468965    AGT    A    121.63    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=24.9545;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=15.2;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254963    GT:AD:DP:GQ:PL    0/1:3,5:8:99:161,0,123
20    3723091    rs611073    A    G    91.90    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.896;QD=8.35;ReadPosRankSum=-1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254963    GT:AD:DP:GQ:PL    0/1:7,4:11:99:122,0,250
20    3732633    rs541760    C    T    80.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=13.49;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=C461;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3732158_3732943;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542646    GT:AD:DP:GQ:PL    0/1:2,4:6:32.73:111,0,33
20    3734386    rs9171    T    C    31.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.33;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254963    GT:AD:DP:GQ:PL    0/1:4,2:6:61.95:62,0,145
20    3734514    rs2295340    T    C    42.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=7.06;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA12B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254963    GT:AD:DP:GQ:PL    0/1:3,3:6:72.37:72,0,106
20    3740620    rs138592224    GCA    G    350.79    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=1.564;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=77.2955;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.887;QD=16.7;ReadPosRankSum=-0.803;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217195    GT:AD:DP:GQ:PL    0/1:8,13:21:99:390,0,248
20    3740874    rs484597    T    C    67.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.537;QD=11.31;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217195    GT:AD:DP:GQ:PL    0/1:3,3:6:97.85:98,0,108
20    3756209    rs13036966    G    A    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.65;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379756    GT:AD:DP:GQ:PL    0/1:2,2:4:68.61:69,0,70
20    3756597    rs13043330    T    C    74.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=12.37;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379756    GT:AD:DP:GQ:PL    0/1:2,4:6:70.50:104,0,70
20    3759200    rs2281477    G    A    30.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.32;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379756    GT:AD:DP:GQ:PL    0/1:5,2:7:60.22:60,0,178
20    3759528    rs2281478    C    T    533    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.847;DB;DP=48;Dels=0.0;FS=4.179;HRun=1;HaplotypeScore=2.0234;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=11.1;ReadPosRankSum=0.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379751    GT:AD:DP:GQ:PL    0/1:28,20:48:99:563,0,900
20    3760548    rs6116037    G    A    41.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.36;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379751    GT:AD:DP:GQ:PL    0/1:2,2:4:67.52:71,0,68
20    3778433    rs3746644    T    C    585.18    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=39;Dels=0.0;FS=12.041;HRun=1;HaplotypeScore=1.4725;MQ=59.41;MQ0=0;MQRankSum=0.106;QD=15.0;ReadPosRankSum=-0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245960    GT:AD:DP:GQ:PL    0/1:20,19:39:99:615,0,539
20    3780857    .    T    TGGACTGGAGACCTGGTGCTAG    1822.70    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DP=13;FS=5.643;HRun=0;HaplotypeScore=160.2751;IndelType=I;MQ=47.07;MQ0=0;MQRankSum=-2.262;QD=140.21;ReadPosRankSum=0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245960    GT:AD:DP:GQ:PL    0/1:6,5:13:99:1862,0,306
20    3783649    rs592687    G    C    1190.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245960    GT:AD:DP:GQ:PL    1/1:0,35:35:93.25:1224,93,0
20    3783993    rs11696899    G    A    510.31    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=4.388;DB;DP=40;Dels=0.0;FS=3.187;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-2.031;QD=12.76;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468979    GT:AD:DP:GQ:PL    0/1:21,19:40:99:540,0,587
20    3784110    rs1056720    C    T    774.44    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.151;DB;DP=71;Dels=0.0;FS=3.277;HRun=1;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=-1.374;QD=10.91;ReadPosRankSum=-0.18;SNPEFF_AMINO_ACID_CHANGE=I381;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_3784051_3784184;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC25B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379598    GT:AD:DP:GQ:PL    0/1:40,31:71:99:804,0,1200
20    3846843    rs3746660    C    T    149.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAVS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358134    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
20    4053254    rs6139288    A    G    2668.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=31.03;SNPEFF_AMINO_ACID_CHANGE=F87S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_4053168_4053311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-352D3.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379526    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2701,205,0
20    4055064    rs73610136    T    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-352D3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379526    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    4055107    rs945764    A    G    165.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-352D3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379526    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
20    4055167    rs16989193    C    T    250.12    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=23;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-1.336;QD=10.87;ReadPosRankSum=0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-352D3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379526    GT:AD:DP:GQ:PL    0/1:13,10:23:99:280,0,474
20    4055656    rs6139292    C    A    33.17    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.63;ReadPosRankSum=-0.358;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_20_4055394_4055812;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-352D3.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379526    GT:AD:DP:GQ:PL    0/1:3,2:5:63.16:63,0,107
20    4155948    rs1741315    G    A    340.57    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=0.347;QD=17.03;ReadPosRankSum=1.042;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493223    GT:AD:DP:GQ:PL    0/1:8,12:20:99:371,0,225
20    4162287    rs6037781    T    G    68.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.14;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278795    GT:AD:DP:GQ:PL    0/1:1,3:4:29.20:99,0,29
20    4162411    rs1124983    T    C    583.95    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.497;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.76;MQ0=0;MQRankSum=0.608;QD=17.18;ReadPosRankSum=-1.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278795    GT:AD:DP:GQ:PL    0/1:14,20:34:99:614,0,375
20    4163242    rs28927676    C    T    423.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.169;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-1.333;QD=15.11;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=F229;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_4162736_4163495;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457205    GT:AD:DP:GQ:PL    0/1:14,14:28:99:453,0,369
20    4163302    rs1051904    A    G    1145.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.95;SNPEFF_AMINO_ACID_CHANGE=A249;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_4162736_4163495;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457205    GT:AD:DP:GQ:PL    1/1:0,37:37:93.28:1178,93,0
20    4164283    rs1741327    A    G    1531.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.19;MQ0=0;QD=31.26;SNPEFF_AMINO_ACID_CHANGE=T361;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_4164141_4164301;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457205    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1565,120,0
20    4167234    rs6139351    C    T    102.82    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.896;QD=9.35;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466004    GT:AD:DP:GQ:PL    0/1:7,4:11:99:133,0,261
20    4202041    rs2236554    T    A    108.20    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.02;ReadPosRankSum=1.307;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379453    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,175
20    4202802    rs835873    A    G    601.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.53;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADRA1D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379453    GT:AD:DP:GQ:PL    1/1:0,19:19:48.13:635,48,0
20    4679836    rs78236631    G    A    792.96    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=3.818;DB;DP=48;Dels=0.0;FS=3.359;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.949;QD=16.52;ReadPosRankSum=1.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379440    GT:AD:DP:GQ:PL    0/1:23,25:48:99:823,0,664
20    4680217    rs8124214    A    G    413.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.299;DB;DP=38;Dels=0.03;FS=18.096;HRun=1;HaplotypeScore=2.9986;MQ=53.78;MQ0=0;MQRankSum=-0.127;QD=10.6;ReadPosRankSum=-2.25;SNPEFF_AMINO_ACID_CHANGE=A117;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_4679857_4682236;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRNP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379440    GT:AD:DP:GQ:PL    0/1:19,19:38:99:443,0,491
20    4680251    rs1799990    A    G    1102.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=26.25;SNPEFF_AMINO_ACID_CHANGE=M129V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_4679857_4682236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRNP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379440    GT:AD:DP:GQ:PL    1/1:0,42:42:93.24:1136,93,0
20    4704957    rs2256319    C    A    70.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305817    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
20    4705718    rs2245220    C    T    374.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_AMINO_ACID_CHANGE=T174M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_4705187_4709106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRND;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000305817    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:407,30,0
20    4705756    rs2756263    T    C    139.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.85;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305817    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:172,15,0
20    4713339    rs75337428    G    A    129.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=12.99;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRND;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305817    GT:AD:DP:GQ:PL    0/1:5,5:10:99:160,0,105
20    4765034    rs41279440    C    A    674.70    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.322;DB;DP=46;Dels=0.0;FS=15.009;HRun=1;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.659;QD=14.67;ReadPosRankSum=-0.569;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:20,26:46:99:705,0,585
20    4768183    rs2422986    G    A    136.90    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=13.69;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:4,6:10:99:167,0,121
20    4768475    rs111533115    A    AAGGGACT    862.14    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.512;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=98.9473;IndelType=I;MQ=51.35;MQ0=0;MQRankSum=-2.646;QD=47.9;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:10,7:18:99:901,0,636
20    4768846    rs66613512    GT    G    1211.37    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=6.411;DB;DP=81;FS=0.0;HRun=1;HaplotypeScore=194.1892;IndelType=D;MQ=60.12;MQ0=0;MQRankSum=-0.889;QD=14.96;ReadPosRankSum=0.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:45,36:81:99:1250,0,1903
20    4770440    rs2422992    G    A    242.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
20    4773332    rs55990291    G    C    45.34    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=4.53;ReadPosRankSum=-1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:6,4:10:75.33:75,0,173
20    4773338    rs1998291    G    A    326.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:360,30,0
20    4773597    rs1998292    T    C    1817.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=34.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1851,138,0
20    4776298    rs6052883    T    C    257.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=23.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,11:11:32.97:291,33,0
20    4776299    rs6052884    G    C    257.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=23.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,11:11:32.97:291,33,0
20    4776320    rs6052885    T    C    638.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,17:17:51.16:672,51,0
20    4776367    rs6052886    G    T    593.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;QD=17.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,16:33:48.16:627,48,0
20    4776387    rs6052887    C    G    1371.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1404,102,0
20    4776445    rs2423004    G    A    2028.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2062,153,0
20    4776718    rs2423005    C    A    353.14    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.738;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=29.43;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:1,11:12:6.12:383,0,6
20    4776764    rs2423006    G    C    164.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
20    4776789    rs57821058    C    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:70,0,32
20    4778754    rs2281639    A    G    179.42    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=19;Dels=0.0;FS=4.337;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.071;QD=9.44;ReadPosRankSum=0.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:12,7:19:99:209,0,442
20    4778879    rs78452642    C    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASSF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379376    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
20    4839890    rs75996398    T    A    97.64    HaplotypeScoreFilter13;QDFilter2    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.764;DB;DP=108;Dels=0.0;FS=1.079;HRun=6;HaplotypeScore=29.7531;MQ=49.71;MQ0=0;MQRankSum=-5.618;QD=0.9;ReadPosRankSum=-2.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC23A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338244    GT:AD:DP:GQ:PL    0/1:63,45:108:99:128,0,1870
20    4840270    rs6107541    T    C    37.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.35;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC23A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338244    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:67,0,32
20    4843370    rs3737321    C    T    838.40    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=72;Dels=0.0;FS=3.203;HRun=0;HaplotypeScore=1.8675;MQ=59.68;MQ0=0;MQRankSum=-0.746;QD=11.64;ReadPosRankSum=-0.723;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC23A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338244    GT:AD:DP:GQ:PL    0/1:36,35:72:99:868,0,1081
20    4843470    rs34073337    C    A    486.36    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=49;Dels=0.0;FS=19.801;HRun=1;HaplotypeScore=0.7887;MQ=59.43;MQ0=0;MQRankSum=-0.674;QD=9.93;ReadPosRankSum=0.052;SNPEFF_AMINO_ACID_CHANGE=A366;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_4843424_4843553;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC23A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424750    GT:AD:DP:GQ:PL    0/1:31,18:49:99:516,0,859
20    4864134    rs61234585    C    A    202.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.536;QD=16.84;ReadPosRankSum=0.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC23A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338244    GT:AD:DP:GQ:PL    0/1:4,8:12:99:232,0,132
20    4865181    rs4987220    G    A    165.63    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=20.7;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC23A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338244    GT:AD:DP:GQ:PL    0/1:2,6:8:38.20:196,0,38
20    4880132    rs71993570    AGCTCAATGCCTTCTGC    A    8150.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;FS=0.0;HRun=0;HaplotypeScore=1587.7389;IndelType=D;MQ=40.7;MQ0=0;QD=74.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC23A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338244    GT:AD:DP:GQ:PL    1/1:38,71:109:99:8151,214,0
20    5086720    rs150372292    GACAA    G    442.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=132.1258;IndelType=D;MQ=56.82;MQ0=0;QD=27.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf30;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379276    GT:AD:DP:GQ:PL    1/1:5,9:16:37.49:485,37,0
20    5086939    rs6116651    A    T    485.48    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.475;DB;DP=37;Dels=0.0;FS=1.297;HRun=2;HaplotypeScore=0.9332;MQ=58.45;MQ0=0;MQRankSum=0.634;QD=13.12;ReadPosRankSum=-0.38;SNPEFF_AMINO_ACID_CHANGE=P102;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5086834_5086956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf30;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342308    GT:AD:DP:GQ:PL    0/1:20,17:37:99:515,0,572
20    5098391    rs3730428    C    T    66.48    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=8.31;ReadPosRankSum=-0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379143    GT:AD:DP:GQ:PL    0/1:5,3:8:96.47:96,0,182
20    5099516    rs17349    G    A    1490.68    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.088;DB;DP=88;Dels=0.0;FS=10.474;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.293;QD=16.94;ReadPosRankSum=-1.916;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379143    GT:AD:DP:GQ:PL    0/1:34,54:88:99:1521,0,1038
20    5099636    rs25406    G    A    50    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.775;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.085;QD=3.85;ReadPosRankSum=0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379143    GT:AD:DP:GQ:PL    0/1:10,3:13:79.99:80,0,374
20    5159344    rs2295508    C    T    280.56    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.914;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;MQRankSum=1.395;QD=16.5;ReadPosRankSum=0.625;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486875    GT:AD:DP:GQ:PL    0/1:8,9:17:99:311,0,277
20    5159353    rs11696229    C    T    324.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.621;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.71;MQ0=0;MQRankSum=1.466;QD=18.01;ReadPosRankSum=-0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486875    GT:AD:DP:GQ:PL    0/1:8,10:18:99:354,0,274
20    5159739    rs1292243    C    G    318.20    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.212;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=56.25;MQ0=0;MQRankSum=0.071;QD=16.75;ReadPosRankSum=-0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486875    GT:AD:DP:GQ:PL    0/1:7,12:19:99:348,0,114
20    5169877    rs6038087    A    G    1119.62    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.86;DB;DP=72;Dels=0.0;FS=4.313;HRun=0;HaplotypeScore=1.4679;MQ=59.68;MQ0=0;MQRankSum=-0.837;QD=15.55;ReadPosRankSum=-0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450570    GT:AD:DP:GQ:PL    0/1:32,40:72:99:1150,0,868
20    5261029    rs6038114    G    A    665.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.643;DB;DP=35;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=19.02;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,21:35:99:696,0,430
20    5261132    rs6038115    G    A    1331.53    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=0.422;DB;DP=104;Dels=0.0;FS=2.566;HRun=1;HaplotypeScore=3.8842;MQ=60.0;MQ0=0;MQRankSum=-0.768;QD=12.8;ReadPosRankSum=0.821;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:58,46:104:99:1362,0,1496
20    5261206    rs4553880    T    C    724.45    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.117;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.351;QD=15.09;ReadPosRankSum=0.021;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,27:48:99:754,0,721
20    5282619    rs3746681    A    T    190.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.054;QD=21.2;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROKR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217270    GT:AD:DP:GQ:PL    0/1:3,6:9:95.17:221,0,95
20    5283256    rs3746682    C    G    1145.17    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.029;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9837;MQ=59.76;MQ0=0;MQRankSum=0.13;QD=12.05;ReadPosRankSum=-0.071;SNPEFF_AMINO_ACID_CHANGE=T195;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5282686_5283382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROKR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217270    GT:AD:DP:GQ:PL    0/1:49,46:95:99:1175,0,1506
20    5283376    rs3746684    G    A    799.17    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.841;DB;DP=65;Dels=0.0;FS=3.06;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=12.29;ReadPosRankSum=-0.508;SNPEFF_AMINO_ACID_CHANGE=L155;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5282686_5283382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROKR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217270    GT:AD:DP:GQ:PL    0/1:36,29:65:99:829,0,1134
20    5294461    rs8116536    G    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROKR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217270    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
20    5294496    rs8116897    C    T    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.63;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROKR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217270    GT:AD:DP:GQ:PL    0/1:2,2:4:63.52:69,0,64
20    5454400    rs606389    A    T    343.08    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.417;DB;DP=50;Dels=0.0;FS=4.376;HRun=0;HaplotypeScore=0.0;MQ=41.14;MQ0=3;MQRankSum=-4.151;QD=6.86;ReadPosRankSum=0.314;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-828H9.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430097    GT:AD:DP:GQ:PL    0/1:28,22:50:99:373,0,924
20    5482307    rs6053447    G    A    822.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.04;MQ0=15;QD=19.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-1022P6.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379053    GT:AD:DP:GQ:PL    1/1:7,35:42:75.13:855,75,0
20    5548208    rs71334311    TA    T    346.28    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.783;DB;DP=65;FS=6.523;HRun=16;HaplotypeScore=381.7603;IndelType=D;MQ=57.65;MQ0=0;MQRankSum=-0.261;QD=5.33;ReadPosRankSum=2.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPCPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378992    GT:AD:DP:GQ:PL    0/1:25,34:65:39.99:385,0,40
20    5550618    rs755662    A    T    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPCPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
20    5551034    rs1056244    G    C    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=22.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPCPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378992    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:122,9,0
20    5564774    rs6053517    T    C    299.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPCPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378992    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:333,24,0
20    5574134    rs1983694    T    C    1372.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPCPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378992    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1406,108,0
20    5897186    rs236145    G    C    119.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=23.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378961    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
20    5902853    rs4815876    C    A    295.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488832    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
20    5903192    rs78101688    G    A    1108.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DB;DP=40;Dels=0.0;FS=2.762;HRun=0;HaplotypeScore=0.9332;MQ=59.42;MQ0=0;MQRankSum=-0.037;QD=27.71;ReadPosRankSum=-0.769;SNPEFF_AMINO_ACID_CHANGE=A114;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5902981_5903719;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455042    GT:AD:DP:GQ:PL    1/1:2,38:40:44.97:1141,45,0
20    5903323    rs910122    G    A    2460.30    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DB;DP=75;Dels=0.0;FS=3.378;HRun=1;HaplotypeScore=1.6649;MQ=60.0;MQ0=0;MQRankSum=1.501;QD=32.8;ReadPosRankSum=0.808;SNPEFF_AMINO_ACID_CHANGE=R158Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5902981_5903719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455042    GT:AD:DP:GQ:PL    1/1:1,74:75:99:2493,149,0
20    5903517    rs236151    A    G    1044.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_AMINO_ACID_CHANGE=T223A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5902981_5903719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455042    GT:AD:DP:GQ:PL    1/1:0,35:35:81.24:1078,81,0
20    5903848    rs236152    C    G    3095.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DB;DP=102;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6384;MQ=59.09;MQ0=0;MQRankSum=1.697;QD=30.34;ReadPosRankSum=0.589;SNPEFF_AMINO_ACID_CHANGE=A353G;SNPEFF_CODON_CHANGE=gCc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5902981_5904746;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378961    GT:AD:DP:GQ:PL    1/1:1,101:102:99:3128,259,0
20    5903894    rs236153    A    G    4287.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.1567;MQ=59.46;MQ0=0;QD=33.5;SNPEFF_AMINO_ACID_CHANGE=E368;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5902981_5904746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378961    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4288,328,0
20    5905472    rs236154    G    T    110.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455042    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
20    5905550    rs236155    G    A    328.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455042    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:362,27,0
20    5919378    rs10485494    C    G    456.82    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.591;DB;DP=27;Dels=0.0;FS=3.023;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.913;QD=16.92;ReadPosRankSum=0.814;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRMT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493972    GT:AD:DP:GQ:PL    0/1:11,16:27:99:487,0,362
20    5922358    rs236175    G    A    129.52    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=11.77;ReadPosRankSum=-0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRMT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493972    GT:AD:DP:GQ:PL    0/1:5,6:11:99:160,0,180
20    5922985    rs76283429    C    T    595.17    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.219;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=58.2;MQ0=0;MQRankSum=1.623;QD=15.26;ReadPosRankSum=-0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRMT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493972    GT:AD:DP:GQ:PL    0/1:19,20:39:99:625,0,597
20    5924781    rs236178    G    C    202.39    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.563;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=1.055;QD=11.91;ReadPosRankSum=2.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRMT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203001    GT:AD:DP:GQ:PL    0/1:6,11:17:99:232,0,179
20    5924782    rs77275928    G    A    202.39    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.06;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=-0.854;QD=11.91;ReadPosRankSum=2.663;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TRMT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203001    GT:AD:DP:GQ:PL    0/1:6,11:17:99:232,0,190
20    5935385    rs236114    T    C    286.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.511;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=19.11;ReadPosRankSum=0.184;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    0/1:5,10:15:99:317,0,161
20    5937719    rs41282142    A    G    189.99    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=23.75;ReadPosRankSum=1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    0/1:2,6:8:56.36:220,0,56
20    5939214    rs3761873    A    C    463.78    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=42;Dels=0.0;FS=1.147;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=0.783;QD=11.04;ReadPosRankSum=0.253;SNPEFF_AMINO_ACID_CHANGE=R211;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5939174_5939372;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    0/1:23,19:42:99:494,0,691
20    5948171    .    G    A    91.03    FSFilter60;QDFilter2    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.74;DP=57;Dels=0.0;FS=81.264;HRun=1;HaplotypeScore=3.5228;MQ=52.7;MQ0=0;MQRankSum=-2.385;QD=1.6;ReadPosRankSum=-0.922;SNPEFF_AMINO_ACID_CHANGE=S322N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5948082_5948233;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    0/1:33,24:57:99:121,0,1181
20    5948706    rs236100    A    G    1023.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    1/1:0,30:31:81.26:1057,81,0
20    5948712    rs236101    C    T    1111.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=37.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    1/1:0,30:30:87.23:1144,87,0
20    5953833    rs16991617    A    G    992.72    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=1.794;DB;DP=85;Dels=0.0;FS=3.016;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.954;QD=11.68;ReadPosRankSum=-1.035;SNPEFF_AMINO_ACID_CHANGE=Q446;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_5953702_5953842;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    0/1:49,36:85:99:1023,0,1645
20    5963447    rs75032648    G    A    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:122,9,0
20    5963586    rs55949141    T    G    519.37    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.02;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1299;MQ=59.25;MQ0=0;MQRankSum=0.814;QD=16.75;ReadPosRankSum=-0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    0/1:14,17:31:99:549,0,429
20    5963864    .    A    G    172.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.191;QD=14.36;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    0/1:6,6:12:99:202,0,213
20    5967744    rs180477    T    A    111.36    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.91;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265187    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,100
20    5988095    rs4813786    A    G    214.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378863    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:247,18,0
20    5990727    rs78952439    T    G    87.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.48;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8928;MQ=53.95;MQ0=0;MQRankSum=0.48;QD=7.29;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378863    GT:AD:DP:GQ:PL    1/1:4,8:12:12.02:120,12,0
20    6011882    rs2423132    G    T    840.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378863    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:873,66,0
20    6014954    rs6139898    G    A    74.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.4;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378863    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,99
20    6024986    rs12480532    A    T    38.87    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.96;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378863    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
20    6033033    rs6107751    G    A    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.94;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=P138L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6032791_6033450;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRRN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378858    GT:AD:DP:GQ:PL    0/1:2,3:5:57.15:110,0,57
20    6058041    rs111402902    GA    G    71.64    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.639;DB;DP=21;FS=0.0;HRun=9;HaplotypeScore=59.7229;IndelType=D;MQ=59.63;MQ0=0;MQRankSum=0.047;QD=3.41;ReadPosRankSum=0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:15,6:21:99:111,0,362
20    6064554    rs753929    A    G    153.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
20    6064606    rs2232080    C    T    134.12    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.19;ReadPosRankSum=0.717;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:6,5:11:99:164,0,206
20    6064635    rs753928    G    A    404.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:437,33,0
20    6064710    rs753927    A    G    590.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.82;SNPEFF_AMINO_ACID_CHANGE=F308;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6064687_6064811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536936    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:624,48,0
20    6064731    rs2232079    C    T    113.99    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.333;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.933;QD=7.6;ReadPosRankSum=0.533;SNPEFF_AMINO_ACID_CHANGE=A301;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6064687_6064811;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536936    GT:AD:DP:GQ:PL    0/1:10,5:15:99:144,0,222
20    6064839    rs2232077    T    C    112.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:145,12,0
20    6066147    rs62200470    G    A    39.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.2;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
20    6075510    rs2144938    T    C    524.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.101;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.723;QD=15.42;ReadPosRankSum=1.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:17,17:34:99:554,0,587
20    6088265    rs62200482    G    A    262.60    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=1.78;DB;DP=17;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.625;QD=15.45;ReadPosRankSum=1.203;SNPEFF_AMINO_ACID_CHANGE=R255C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6088179_6088281;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:8,9:17:99:293,0,277
20    6090879    rs11087716    G    A    125.58    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=18;Dels=0.0;FS=2.823;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=6.98;ReadPosRankSum=0.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378844    GT:AD:DP:GQ:PL    0/1:13,5:18:99:156,0,399
20    6091175    rs11087717    T    G    300.73    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=35;Dels=0.0;FS=4.22;HRun=0;HaplotypeScore=1.2434;MQ=59.74;MQ0=0;MQRankSum=1.279;QD=8.59;ReadPosRankSum=1.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378844    GT:AD:DP:GQ:PL    0/1:22,13:35:99:331,0,697
20    6091183    rs11087718    T    C    247.38    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=0.49;DB;DP=35;Dels=0.0;FS=8.4;HRun=1;HaplotypeScore=3.1765;MQ=59.74;MQ0=0;MQRankSum=0.529;QD=7.07;ReadPosRankSum=1.469;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378844    GT:AD:DP:GQ:PL    0/1:23,11:35:99:277,0,750
20    6093090    rs2326719    G    A    1575.51    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=3.749;DB;DP=119;Dels=0.0;FS=0.71;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.826;QD=13.24;ReadPosRankSum=-0.821;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378844    GT:AD:DP:GQ:PL    0/1:60,59:119:99:1606,0,1682
20    6093177    rs16991866    A    G    1710.66    PASS    AB=0.454;AC=1;AF=0.50;AN=2;BaseQRankSum=3.917;DB;DP=108;Dels=0.0;FS=1.665;HRun=0;HaplotypeScore=3.4849;MQ=60.0;MQ0=0;MQRankSum=-0.872;QD=15.84;ReadPosRankSum=0.872;SNPEFF_AMINO_ACID_CHANGE=I160T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6093124_6093270;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:49,59:108:99:1741,0,1460
20    6096337    rs11696536    G    T    89.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=12.78;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:3,4:7:99:119,0,100
20    6096632    rs1056141    G    A    805.14    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.961;DB;DP=55;Dels=0.0;FS=2.619;HRun=2;HaplotypeScore=1.7128;MQ=59.24;MQ0=0;MQRankSum=0.093;QD=14.64;ReadPosRankSum=-0.783;SNPEFF_AMINO_ACID_CHANGE=L71;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6096458_6096691;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:27,28:55:99:835,0,964
20    6100002    rs6038363    C    A    927.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    1/1:0,30:30:72.24:961,72,0
20    6100088    rs10373    A    G    565.60    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.757;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-1.062;QD=12.85;ReadPosRankSum=-0.036;SNPEFF_AMINO_ACID_CHANGE=H38;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6100051_6100219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:26,18:44:99:596,0,800
20    6100230    rs2273423    A    C    278.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:311,24,0
20    6100241    rs2273422    A    G    107.03    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=11.89;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FERMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217289    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,144
20    6195664    rs3905165    C    G    144.30    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=22;Dels=0.0;FS=1.707;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.717;QD=6.56;ReadPosRankSum=-1.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP4-775C13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434910    GT:AD:DP:GQ:PL    0/1:14,8:22:99:174,0,519
20    6751034    rs1049007    A    G    196.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=55.66;MQ0=0;MQRankSum=0.206;QD=8.95;ReadPosRankSum=1.115;SNPEFF_AMINO_ACID_CHANGE=S87;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6750767_6751119;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378827    GT:AD:DP:GQ:PL    0/1:11,11:22:99:227,0,368
20    6759115    rs235768    A    T    366.54    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.598;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.928;QD=9.4;ReadPosRankSum=1.902;SNPEFF_AMINO_ACID_CHANGE=R190S;SNPEFF_CODON_CHANGE=agA/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_6758892_6760910;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378827    GT:AD:DP:GQ:PL    0/1:27,12:39:99:397,0,756
20    7677668    rs969111    T    C    459.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL031653.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408799    GT:AD:DP:GQ:PL    1/1:0,13:13:39.09:492,39,0
20    7976535    rs116410648    T    C    42.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.09;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246024    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:72,0,33
20    7976762    .    TA    T    241.75    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=1.907;DP=36;FS=0.0;HRun=10;HaplotypeScore=97.0232;IndelType=D;MQ=60.6;MQ0=0;MQRankSum=-0.758;QD=6.72;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246024    GT:AD:DP:GQ:PL    0/1:21,14:36:99:281,0,361
20    7980552    rs3834657    C    CA    476.85    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.507;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=48.7044;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.81;QD=22.71;ReadPosRankSum=-0.887;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246024    GT:AD:DP:GQ:PL    0/1:8,13:21:99:516,0,276
20    8628696    rs2235947    G    A    70.23    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.03;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,146
20    8637727    rs6140670    G    A    133.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=13.35;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:4,6:10:99:164,0,139
20    8678446    rs2295179    G    A    378.34    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=25;Dels=0.0;FS=1.906;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.354;QD=15.13;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:12,13:25:99:408,0,420
20    8698113    rs3859675    A    C    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
20    8698565    rs6039243    T    C    42.78    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.69;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:1,3:4:28.63:73,0,29
20    8702867    rs6056041    T    C    62.21    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.89;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:4,3:7:92.20:92,0,147
20    8703145    rs6086563    C    G    307.71    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.386;QD=23.67;ReadPosRankSum=0.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:4,9:13:99:338,0,107
20    8705496    rs6056043    A    C    76.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=9.58;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:4,4:8:99:107,0,144
20    8705552    rs2327097    A    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
20    8713842    rs993670    G    A    489.04    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=1.925;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.28;MQ0=0;MQRankSum=-0.456;QD=15.28;ReadPosRankSum=1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:14,17:32:99:519,0,496
20    8741027    rs2064286    C    T    434.64    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.401;DB;DP=50;Dels=0.0;FS=1.482;HRun=1;HaplotypeScore=1.5762;MQ=59.54;MQ0=0;MQRankSum=-1.143;QD=8.69;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:32,17:50:99:465,0,921
20    8741247    rs3886935    C    T    311.63    PASS    AB=0.312;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.473;QD=19.48;ReadPosRankSum=-0.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:5,11:16:99:342,0,142
20    8754983    rs2235614    C    A    122.83    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.19;MQ0=0;MQRankSum=1.307;QD=13.65;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:4,5:9:99:153,0,140
20    8755243    rs2235613    T    C    1094.66    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.04;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=-0.972;QD=12.44;ReadPosRankSum=-0.165;SNPEFF_AMINO_ACID_CHANGE=A916;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_8755186_8755366;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441163    GT:AD:DP:GQ:PL    0/1:52,36:88:99:1125,0,1564
20    8769180    rs2327089    C    T    238.35    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=29;Dels=0.0;FS=1.571;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.022;QD=8.22;ReadPosRankSum=-0.247;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494924    GT:AD:DP:GQ:PL    0/1:18,11:29:99:268,0,583
20    8770108    rs4633993    A    C    748.68    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=3.85;DB;DP=49;Dels=0.0;FS=3.1;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.45;QD=15.28;ReadPosRankSum=-0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494924    GT:AD:DP:GQ:PL    0/1:24,25:49:99:779,0,831
20    8770130    rs2327090    A    G    855.84    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.284;DB;DP=55;Dels=0.0;FS=15.476;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.087;QD=15.56;ReadPosRankSum=-1.711;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494924    GT:AD:DP:GQ:PL    0/1:26,29:55:99:886,0,866
20    8770282    rs6039269    G    A    576.35    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.081;QD=14.41;ReadPosRankSum=-1.706;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494924    GT:AD:DP:GQ:PL    0/1:21,19:40:99:606,0,677
20    8773075    rs6056117    G    C    74.92    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.98;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494924    GT:AD:DP:GQ:PL    0/1:2,3:5:70.24:105,0,70
20    8773155    rs6056118    C    T    412.45    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.094;DB;DP=24;Dels=0.0;FS=4.075;HRun=3;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.661;QD=17.19;ReadPosRankSum=0.976;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494924    GT:AD:DP:GQ:PL    0/1:9,14:24:99:442,0,299
20    8773295    rs6056119    T    C    461.01    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.792;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.423;QD=13.97;ReadPosRankSum=0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494924    GT:AD:DP:GQ:PL    0/1:16,17:33:99:491,0,497
20    8782901    rs6056128    G    C    68.21    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=9.74;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    0/1:4,3:7:98.21:98,0,145
20    8862157    rs34765604    A    AAGTT    2609.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;DB;DP=39;FS=0.0;HRun=0;HaplotypeScore=123.0123;IndelType=I;MQ=51.73;MQ0=0;MQRankSum=-1.444;QD=66.92;ReadPosRankSum=-1.251;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338037    GT:AD:DP:GQ:PL    1/1:7,30:39:53.14:2652,53,0
20    9288522    rs6077510    G    A    577.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_AMINO_ACID_CHANGE=A21T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_9288447_9288545;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278655    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:610,45,0
20    9416040    rs3817877    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278655    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
20    9424810    rs6039471    A    C    750.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.852;DB;DP=50;Dels=0.0;FS=10.955;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.543;QD=15.01;ReadPosRankSum=0.388;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278655    GT:AD:DP:GQ:PL    0/1:25,25:50:99:781,0,836
20    9424904    rs6056629    C    A    669.86    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=0.913;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.3654;MQ=59.51;MQ0=0;MQRankSum=0.715;QD=14.25;ReadPosRankSum=2.012;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278655    GT:AD:DP:GQ:PL    0/1:22,25:47:99:700,0,706
20    9438172    rs3746548    A    G    620.46    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DB;DP=39;Dels=0.0;FS=3.079;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=15.91;ReadPosRankSum=0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278655    GT:AD:DP:GQ:PL    0/1:18,21:39:99:650,0,608
20    9453567    rs2206389    T    C    873.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5284;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278655    GT:AD:DP:GQ:PL    1/1:0,23:24:69.20:907,69,0
20    9453901    rs11476385    ATT    A    49.50    QDFilter2    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.351;DB;DP=61;FS=2.028;HRun=20;HaplotypeScore=401.4263;IndelType=D;MQ=52.04;MQ0=0;MQRankSum=1.234;QD=0.81;ReadPosRankSum=2.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278655    GT:AD:DP:GQ:PL    0/1:35,14:61:88.53:89,0,464
20    9624587    rs6056774    C    T    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353224    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
20    9625003    rs4816157    G    A    1077.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353224    GT:AD:DP:GQ:PL    1/1:0,28:28:81.27:1111,81,0
20    10019093    rs575534    A    G    2282.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_AMINO_ACID_CHANGE=G48;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_10018906_10019295;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378380    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2315,175,0
20    10026357    rs685723    T    C    1438.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9385;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378380    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1471,108,0
20    10030188    rs652633    T    A    2920.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_AMINO_ACID_CHANGE=L324Q;SNPEFF_CODON_CHANGE=cTg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_10030038_10030860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378380    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2953,223,0
20    10030452    rs524625    G    A    2659.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=35.94;SNPEFF_AMINO_ACID_CHANGE=G412E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_10030038_10030860;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378380    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2693,205,0
20    10030931    rs656111    C    A    410.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378380    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:443,33,0
20    10032094    rs681750    G    A    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378380    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    10032413    rs683145    T    G    1249.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.87;MQ0=0;QD=30.47;SNPEFF_AMINO_ACID_CHANGE=A582;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_10032311_10032537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378380    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1282,99,0
20    10277452    rs362987    A    C    103.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=10.39;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430336    GT:AD:DP:GQ:PL    0/1:6,4:10:99:134,0,194
20    10438780    rs6104617    A    G    895.32    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.188;DB;DP=57;Dels=0.0;FS=8.715;HRun=1;HaplotypeScore=0.9998;MQ=59.19;MQ0=0;MQRankSum=-0.008;QD=15.71;ReadPosRankSum=0.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334534    GT:AD:DP:GQ:PL    0/1:22,35:57:99:925,0,724
20    10439002    rs6039947    T    A    167.27    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.837;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.776;QD=8.8;ReadPosRankSum=-1.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf94;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334534    GT:AD:DP:GQ:PL    0/1:9,10:19:99:197,0,313
20    10620275    rs1051421    G    A    1303.92    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.593;DB;DP=116;Dels=0.0;FS=6.261;HRun=0;HaplotypeScore=3.7441;MQ=59.8;MQ0=0;MQRankSum=0.183;QD=11.24;ReadPosRankSum=-0.526;SNPEFF_AMINO_ACID_CHANGE=Y1017;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_10620120_10620603;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423891    GT:AD:DP:GQ:PL    0/1:68,48:116:99:1334,0,1888
20    10620386    rs1051419    A    G    624.60    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DB;DP=67;Dels=0.0;FS=2.153;HRun=0;HaplotypeScore=0.9999;MQ=59.66;MQ0=0;MQRankSum=0.072;QD=9.32;ReadPosRankSum=-1.765;SNPEFF_AMINO_ACID_CHANGE=Y1139;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_10618332_10620603;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254958    GT:AD:DP:GQ:PL    0/1:41,26:67:99:655,0,1255
20    10622080    rs55818737    CA    C    564.10    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=5.012;DB;DP=76;FS=2.032;HRun=10;HaplotypeScore=226.305;IndelType=D;MQ=59.54;MQ0=0;MQRankSum=-0.296;QD=7.42;ReadPosRankSum=0.443;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488480    GT:AD:DP:GQ:PL    0/1:44,32:76:99:603,0,1024
20    10624924    rs33967297    T    TCTCACACA    581.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.044;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=58.2056;IndelType=I;MQ=46.91;MQ0=0;MQRankSum=1.393;QD=58.15;ReadPosRankSum=0.348;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488480    GT:AD:DP:GQ:PL    0/1:2,5:10:7.12:620,0,7
20    10633237    rs1131695    G    A    369.54    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=2.045;DB;DP=33;Dels=0.0;FS=3.176;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.161;QD=11.2;ReadPosRankSum=-1.308;SNPEFF_AMINO_ACID_CHANGE=Y255;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_10633116_10633246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000254958    GT:AD:DP:GQ:PL    0/1:20,13:33:99:400,0,641
20    10633313    rs6040055    T    C    134.90    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.352;DB;DP=22;Dels=0.0;FS=5.617;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.493;QD=6.13;ReadPosRankSum=-0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254958    GT:AD:DP:GQ:PL    0/1:15,7:22:99:165,0,468
20    10639385    rs2273060    A    G    622.90    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.142;QD=11.98;ReadPosRankSum=-1.448;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254958    GT:AD:DP:GQ:PL    0/1:29,23:52:99:653,0,838
20    11790885    rs3036550    C    CTT    3692.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=2;HaplotypeScore=153.7473;IndelType=I;MQ=59.08;MQ0=0;QD=55.12;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf61;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,65:67:99:3693,199,0
20    11791008    rs803665    C    T    2899.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.01;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=59.73;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf61;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,82:83:99:2933,217,0
20    11791094    rs803664    G    A    822.55    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.617;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.045;QD=14.96;ReadPosRankSum=0.223;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf61;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:26,29:55:99:853,0,718
20    11830180    rs33956420    CT    C    161.39    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=3.062;DB;DP=24;FS=0.0;HRun=10;HaplotypeScore=54.8961;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=1.096;QD=6.72;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf61;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,10:24:99:200,0,272
20    12990044    rs3761895    T    C    2165.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.04;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2199,168,0
20    12990212    rs3761893    G    A    304.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:337,27,0
20    13029437    rs3789353    A    G    154.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=19.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,8:8:18.02:187,18,0
20    13029764    rs1431433    A    C    2641.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=R70;SNPEFF_CODON_CHANGE=Aga/Cga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_13029593_13029778;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450297    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2675,211,0
20    13029862    rs919604    C    T    3437.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5655;MQ=59.52;MQ0=0;QD=35.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3438,262,0
20    13029920    rs934335    C    G    3014.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.72;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,82:82:99:3048,226,0
20    13053018    rs243887    T    G    6747.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=205;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6616;MQ=59.44;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=L113V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_13052904_13053058;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000450297    GT:AD:DP:GQ:PL    1/1:0,204:205:99:6747,500,0
20    13053035    rs243888    A    G    5638.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.21;MQ0=0;QD=32.22;SNPEFF_AMINO_ACID_CHANGE=S118;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_13052904_13053058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000450297    GT:AD:DP:GQ:PL    1/1:0,175:175:99:5639,436,0
20    13053282    rs8126205    G    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434210    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
20    13055258    rs6131426    C    A    714.86    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=15.9726;MQ=61.29;MQ0=0;QD=35.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434210    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:748,57,0
20    13055267    .    G    GA    545.90    PASS    AC=2;AF=1.00;AN=2;DP=19;FS=0.0;HRun=8;HaplotypeScore=127.7242;IndelType=I;MQ=61.35;MQ0=0;QD=28.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434210    GT:AD:DP:GQ:PL    1/1:2,17:19:51.15:588,51,0
20    13060131    rs8119762    A    G    67.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
20    13060172    rs8113891    T    C    175.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
20    13060220    rs8119959    G    A    641.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:674,51,0
20    13060331    rs8120012    G    A    2579.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.74;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2612,193,0
20    13071512    rs58115914    C    G    589.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=61.34;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:622,48,0
20    13071544    rs113430378    AT    A    698.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=98.9511;IndelType=D;MQ=61.13;MQ0=0;QD=36.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:741,57,0
20    13074235    rs708937    G    A    1132.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,38:38:87.25:1166,87,0
20    13134470    rs2073304    T    C    472.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPTLC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378194    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:506,36,0
20    13260252    rs911642    C    T    123.86    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.573;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=7.74;ReadPosRankSum=-0.163;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262487    GT:AD:DP:GQ:PL    0/1:10,6:16:99:154,0,338
20    13269438    rs66516088    C    CT    721.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.538;DB;DP=36;FS=0.0;HRun=11;HaplotypeScore=128.9629;IndelType=I;MQ=58.01;MQ0=0;MQRankSum=1.372;QD=20.05;ReadPosRankSum=1.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262487    GT:AD:DP:GQ:PL    1/1:9,26:36:42.67:764,43,0
20    13279411    rs6078980    G    T    63.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=21.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262487    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:95,9,0
20    13463749    rs2273477    T    G    309.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=34.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455532    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:343,27,0
20    13464030    rs2273480    C    A    1834.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=36.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337743    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1867,144,0
20    13509263    rs3761890    G    A    193.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337743    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:227,18,0
20    13509307    rs3761889    G    C    90.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337743    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
20    13514459    rs2073324    A    G    237.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337743    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:271,21,0
20    13561632    rs71334133    T    TAA    792.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.418;DB;DP=53;FS=0.0;HRun=16;HaplotypeScore=340.4162;IndelType=I;MQ=54.5;MQ0=0;MQRankSum=-1.255;QD=14.96;ReadPosRankSum=-0.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TASP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337743    GT:AD:DP:GQ:PL    1/1:26,21:53:62.29:835,62,0
20    13695464    rs6079145    T    C    493.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202816    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:527,42,0
20    13695680    rs6110019    C    T    1311.61    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.819;DB;DP=101;Dels=0.0;FS=1.603;HRun=3;HaplotypeScore=0.6651;MQ=59.08;MQ0=0;MQRankSum=0.588;QD=12.99;ReadPosRankSum=-1.003;SNPEFF_AMINO_ACID_CHANGE=R799;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_13694969_13695814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000202816    GT:AD:DP:GQ:PL    0/1:53,48:101:99:1342,0,1601
20    13698006    rs4239710    T    C    2802.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202816    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2836,208,0
20    13740283    rs2297050    G    C    390.11    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.329;DB;DP=29;Dels=0.0;FS=2.418;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.636;QD=13.45;ReadPosRankSum=-2.171;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000541185    GT:AD:DP:GQ:PL    0/1:16,13:29:99:420,0,560
20    13747441    rs3180370    A    G    2008.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=I550T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_13747424_13747571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000202816    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2041,147,0
20    13750448    rs73619825    C    CA    1046.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=6;HaplotypeScore=86.5883;IndelType=I;MQ=59.96;MQ0=0;QD=34.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202816    GT:AD:DP:GQ:PL    1/1:1,29:30:87.28:1089,87,0
20    13753124    rs2274674    A    C    553.37    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=3.08;DB;DP=34;Dels=0.0;FS=13.627;HRun=0;HaplotypeScore=2.2657;MQ=59.32;MQ0=0;MQRankSum=-1.495;QD=16.28;ReadPosRankSum=1.999;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202816    GT:AD:DP:GQ:PL    0/1:17,16:34:99:583,0,487
20    13755728    rs67609153;rs71943225    CA    C    91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.158;DB;DP=20;FS=0.0;HRun=17;HaplotypeScore=161.3712;IndelType=D;MQ=51.33;MQ0=0;MQRankSum=0.158;QD=4.55;ReadPosRankSum=0.791;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202816    GT:AD:DP:GQ:PL    1/1:6,13:20:6.96:132,7,0
20    13763896    rs28372964    C    CATTA    964.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=41.8014;IndelType=I;MQ=52.03;MQ0=0;QD=68.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202816    GT:AD:DP:GQ:PL    1/1:2,12:14:39.13:1006,39,0
20    13768079    rs6042361    T    G    953.49    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.848;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.058;QD=16.73;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378106    GT:AD:DP:GQ:PL    0/1:27,30:57:99:983,0,913
20    13769127    rs6042362    A    G    172.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378106    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
20    13773572    rs60914078    C    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
20    13782409    rs1015517    A    G    297.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378106    GT:AD:DP:GQ:PL    1/1:0,10:10:27.06:330,27,0
20    13789247    rs885796    A    G    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378106    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
20    13830102    rs2073289    C    T    612.22    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.911;DB;DP=44;Dels=0.0;FS=1.435;HRun=0;HaplotypeScore=2.9994;MQ=59.48;MQ0=0;MQRankSum=-0.645;QD=13.91;ReadPosRankSum=-0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492548    GT:AD:DP:GQ:PL    0/1:20,24:44:99:642,0,600
20    13830137    rs2073290    A    C    791.70    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.563;DB;DP=54;Dels=0.0;FS=2.408;HRun=3;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=-0.268;QD=14.66;ReadPosRankSum=-0.441;SNPEFF_AMINO_ACID_CHANGE=H574Q;SNPEFF_CODON_CHANGE=caT/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_13830049_13830250;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378072    GT:AD:DP:GQ:PL    0/1:28,26:54:99:822,0,939
20    13830382    rs2073291    G    A    253.62    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.32;QD=11.53;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492548    GT:AD:DP:GQ:PL    0/1:13,9:22:99:284,0,419
20    13845726    rs2073292    T    C    709.13    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.07;DB;DP=44;Dels=0.0;FS=13.767;HRun=0;HaplotypeScore=0.7887;MQ=59.58;MQ0=0;MQRankSum=-0.094;QD=16.12;ReadPosRankSum=-0.117;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284951    GT:AD:DP:GQ:PL    0/1:21,23:44:99:739,0,625
20    13845987    rs761811    C    T    3489.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284951    GT:AD:DP:GQ:PL    1/1:0,109:109:99:3489,253,0
20    13846191    rs761812    A    G    248.07    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.107;DB;DP=17;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.048;QD=14.59;ReadPosRankSum=0.818;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284951    GT:AD:DP:GQ:PL    0/1:8,9:17:99:278,0,250
20    13847420    rs660710    A    G    1668.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.08;SNPEFF_AMINO_ACID_CHANGE=L444;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_13847348_13847496;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284951    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1701,132,0
20    13851047    rs243912    G    A    162.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284951    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
20    13868745    rs243910    T    C    402.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284951    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:436,33,0
20    13912112    rs6131538    A    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SEL1L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284951    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
20    14306773    rs35253731    T    G    532.28    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=38;Dels=0.0;FS=1.273;HRun=1;HaplotypeScore=0.9578;MQ=59.39;MQ0=0;MQRankSum=0.687;QD=14.01;ReadPosRankSum=0.892;SNPEFF_AMINO_ACID_CHANGE=E460D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_14304641_14308204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341420    GT:AD:DP:GQ:PL    0/1:20,18:38:99:562,0,667
20    14306896    rs6042672    G    A    1096.01    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=1.212;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.32;QD=15.88;ReadPosRankSum=0.995;SNPEFF_AMINO_ACID_CHANGE=T419;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_14304641_14308204;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341420    GT:AD:DP:GQ:PL    0/1:31,38:69:99:1126,0,934
20    14306953    rs6079391    G    T    1301.56    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.119;DB;DP=96;Dels=0.0;FS=3.893;HRun=1;HaplotypeScore=3.8013;MQ=59.52;MQ0=0;MQRankSum=0.657;QD=13.56;ReadPosRankSum=0.227;SNPEFF_AMINO_ACID_CHANGE=H400Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_14304641_14308204;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FLRT3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341420    GT:AD:DP:GQ:PL    0/1:48,45:96:99:1332,0,1425
20    14474353    rs13037982    A    G    87.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9997;MQ=51.77;MQ0=0;QD=29.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217246    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
20    14830328    rs374589    A    G    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217246    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
20    14830453    rs438632    C    T    894.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;QD=38.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217246    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:928,69,0
20    15480226    rs2180526    T    C    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217246    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
20    15480308    rs2145014    G    T    197.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217246    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:230,18,0
20    15480548    rs2145015    T    A    366.91    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.396;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.794;QD=14.11;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217246    GT:AD:DP:GQ:PL    0/1:12,14:26:99:397,0,322
20    15967327    rs34675181    A    G    113.68    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.811;QD=8.74;ReadPosRankSum=-1.656;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MACROD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217246    GT:AD:DP:GQ:PL    0/1:7,6:13:99:144,0,249
20    16223922    rs1541065    T    C    175.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
20    16223957    rs1000121    T    C    176.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.43;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:209,15,0
20    16347590    rs6080245    T    C    195.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
20    16347642    rs1884597    T    G    328.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:361,27,0
20    16351329    rs2144893    C    T    919.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:953,69,0
20    16359567    rs6034464    A    G    3067.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=M1027T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_16359450_16360808;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3101,241,0
20    16475112    rs6044027    G    A    220.81    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=22.08;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    0/1:3,7:10:96.20:251,0,96
20    16486698    rs2295115    G    A    1528.30    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=3.733;DB;DP=94;Dels=0.0;FS=3.202;HRun=1;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=0.042;QD=16.26;ReadPosRankSum=2.003;SNPEFF_AMINO_ACID_CHANGE=L279;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_16486667_16486835;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    0/1:43,51:94:99:1558,0,1191
20    16488922    rs6044039    C    T    141.87    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=20.27;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    0/1:2,5:7:62.46:172,0,62
20    16493533    rs6135775    T    C    751.76    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=2.169;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8941;MQ=58.65;MQ0=0;MQRankSum=1.157;QD=16.71;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=G128;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_16493471_16493568;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    0/1:17,28:45:99:782,0,497
20    16493580    rs6135776    A    G    640.19    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.204;DB;DP=40;Dels=0.0;FS=6.022;HRun=1;HaplotypeScore=0.0;MQ=57.88;MQ0=0;MQRankSum=-0.41;QD=16.0;ReadPosRankSum=-0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    0/1:17,23:40:99:670,0,476
20    16496362    rs6044046    T    A    362.25    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=23;Dels=0.0;FS=4.246;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.735;QD=15.75;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    0/1:9,14:23:99:392,0,271
20    16496415    rs6131837    T    C    147.68    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.41;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    0/1:4,5:9:99:178,0,135
20    16506939    rs6034517    C    T    108.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.429;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.061;QD=7.23;ReadPosRankSum=1.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354981    GT:AD:DP:GQ:PL    0/1:10,5:15:99:138,0,329
20    16712719    rs58201946    T    TG    183.13    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.491;DB;DP=17;FS=0.0;HRun=8;HaplotypeScore=43.2124;IndelType=I;MQ=60.63;MQ0=0;MQRankSum=-0.529;QD=10.77;ReadPosRankSum=-0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246071    GT:AD:DP:GQ:PL    0/1:9,8:17:99:222,0,196
20    16717709    rs75561521    A    C    39.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.88;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478522    GT:AD:DP:GQ:PL    0/1:2,2:4:66.70:70,0,67
20    16720802    rs2423998    G    A    173.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246071    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
20    16729262    rs6080387    C    T    386.62    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=1.536;QD=16.81;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246081    GT:AD:DP:GQ:PL    0/1:10,13:23:99:417,0,314
20    16729654    rs10627353    A    AAGATG    1335.76    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.218;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=181.8286;IndelType=I;MQ=57.23;MQ0=0;MQRankSum=-0.251;QD=31.06;ReadPosRankSum=0.429;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246081    GT:AD:DP:GQ:PL    0/1:27,16:43:99:1375,0,1270
20    17389830    rs2217182    T    C    672.13    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.239;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.612;MQ=59.3;MQ0=0;MQRankSum=-0.166;QD=20.37;ReadPosRankSum=0.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262545    GT:AD:DP:GQ:PL    0/1:13,20:33:99:702,0,435
20    17436895    rs2021789    G    A    1385.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=38.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262545    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1418,108,0
20    17462001    rs11087210    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262545    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
20    17462150    rs11907226    C    T    2094.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.9;MQ0=0;QD=34.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262545    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2127,159,0
20    17474690    rs6105762    T    G    710.11    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=0.381;DB;DP=41;Dels=0.0;FS=2.092;HRun=0;HaplotypeScore=3.9981;MQ=59.54;MQ0=0;MQRankSum=-0.381;QD=17.32;ReadPosRankSum=-0.933;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377868    GT:AD:DP:GQ:PL    0/1:18,23:41:99:740,0,619
20    17474791    rs6080717    G    A    1483.85    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=4.134;DB;DP=99;Dels=0.0;FS=3.778;HRun=0;HaplotypeScore=1.612;MQ=59.81;MQ0=0;MQRankSum=1.201;QD=14.99;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=T503;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17474551_17475674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536626    GT:AD:DP:GQ:PL    0/1:51,48:99:99:1514,0,1518
20    17474968    rs6080718    T    C    1063.63    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.627;DB;DP=94;Dels=0.0;FS=4.071;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=0.604;QD=11.32;ReadPosRankSum=0.42;SNPEFF_AMINO_ACID_CHANGE=P444;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17474551_17475674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536626    GT:AD:DP:GQ:PL    0/1:54,40:94:99:1094,0,1686
20    17479730    rs6111549    T    C    307.72    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=3.318;DB;DP=23;Dels=0.0;FS=7.499;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=13.38;ReadPosRankSum=-0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377868    GT:AD:DP:GQ:PL    0/1:13,10:23:99:338,0,433
20    17492755    rs1559956    C    T    309.50    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.312;QD=23.81;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377868    GT:AD:DP:GQ:PL    0/1:4,9:13:81.76:339,0,82
20    17539168    rs6044883    A    G    221.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BFSP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377868    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:255,21,0
20    17594714    rs35586556    GC    G    377.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=1;HaplotypeScore=28.7689;IndelType=D;MQ=58.88;MQ0=0;QD=34.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455029    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:420,30,0
20    17595329    rs7261001    G    A    554.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:587,45,0
20    17596731    rs2236250    C    T    245.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
20    17597331    rs911347    C    T    1129.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,31:31:87.29:1163,87,0
20    17597361    rs911348    A    G    1057.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,35:35:90.26:1091,90,0
20    17599049    rs911349    G    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
20    17599214    rs2328181    T    C    681.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:715,54,0
20    17600357    rs11960    G    A    329.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_AMINO_ACID_CHANGE=S1199L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17600278_17600373;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:362,27,0
20    17602028    rs2236253    T    C    574.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:607,45,0
20    17605240    rs6034867    A    T    418.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.17;SNPEFF_AMINO_ACID_CHANGE=L1043H;SNPEFF_CODON_CHANGE=cTc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17605221_17605313;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:451,33,0
20    17606372    rs2295672    T    C    345.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495501    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:379,30,0
20    17617531    rs6044923    T    C    70.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=17.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:103,9,0
20    17622385    rs35748180    G    A    525.49    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.67;DB;DP=30;Dels=0.0;FS=4.054;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.72;QD=17.52;ReadPosRankSum=-0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    0/1:9,21:30:99:555,0,226
20    17622429    rs2236255    A    G    645.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.256;DB;DP=54;Dels=0.0;FS=4.503;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.588;QD=11.95;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    0/1:27,27:54:99:675,0,913
20    17639786    rs62207197    T    G    74.40    HaplotypeScoreFilter13;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.997;DB;DP=250;DS;Dels=0.0;FS=6.602;HRun=3;HaplotypeScore=19.133;MQ=52.93;MQ0=7;MQRankSum=-3.483;QD=0.3;ReadPosRankSum=-3.424;SNPEFF_AMINO_ACID_CHANGE=Q456P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17639241_17641152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    0/1:211,39:250:99:104,0,5779
20    17639816    rs62207198    T    G    230.71    HaplotypeScoreFilter13;QDFilter2    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.269;DB;DP=245;DS;Dels=0.0;FS=2.539;HRun=3;HaplotypeScore=58.4312;MQ=50.76;MQ0=13;MQRankSum=-1.974;QD=0.94;ReadPosRankSum=3.692;SNPEFF_AMINO_ACID_CHANGE=Q446P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17639241_17641152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    0/1:200,44:245:99:261,0,5166
20    17639857    rs77553739    G    T    1909.47    HaplotypeScoreFilter13    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=2.931;DB;DP=243;DS;Dels=0.0;FS=36.011;HRun=0;HaplotypeScore=45.5859;MQ=50.35;MQ0=12;MQRankSum=5.571;QD=7.86;ReadPosRankSum=3.424;SNPEFF_AMINO_ACID_CHANGE=A432;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17639241_17641152;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    0/1:155,87:243:99:1939,0,3301
20    17639876    .    T    G    57.84    QDFilter2    AB=0.889;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.471;DP=198;DS;Dels=0.0;FS=8.954;HRun=3;HaplotypeScore=12.5726;MQ=53.02;MQ0=10;MQRankSum=-0.922;QD=0.29;ReadPosRankSum=-2.789;SNPEFF_AMINO_ACID_CHANGE=Q426P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17639241_17641152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    0/1:176,22:198:87.83:88,0,4801
20    17640009    rs13040917    A    C    4254.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.6551;MQ=58.68;MQ0=0;QD=33.77;SNPEFF_AMINO_ACID_CHANGE=S382A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17639241_17641152;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246043    GT:AD:DP:GQ:PL    1/1:0,126:126:99:4255,322,0
20    17705677    rs4814640    A    G    2970.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=N10D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17705668_17705796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545418    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3004,241,0
20    17705849    rs2296907    C    T    584.32    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=58.87;MQ0=0;MQRankSum=0.324;QD=14.25;ReadPosRankSum=-0.803;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BANF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427254    GT:AD:DP:GQ:PL    0/1:18,22:41:99:614,0,625
20    17933511    rs910900    C    A    80.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=16.05;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486776    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:110,0,69
20    17936173    rs150515099    T    A    320.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.119;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.501;QD=15.27;ReadPosRankSum=0.116;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486776    GT:AD:DP:GQ:PL    0/1:8,12:20:99:351,0,269
20    17937801    rs3790301    T    C    43.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.248;QD=4.8;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377759    GT:AD:DP:GQ:PL    0/1:6,3:9:73.15:73,0,212
20    17950545    rs11551768    A    T    325.24    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.154;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=-0.213;QD=9.57;ReadPosRankSum=-0.071;SNPEFF_AMINO_ACID_CHANGE=S15C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_17950444_17951013;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf72;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377704    GT:AD:DP:GQ:PL    0/1:21,13:34:99:355,0,691
20    18022077    rs6136266    A    G    66.99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.57;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462208    GT:AD:DP:GQ:PL    0/1:4,3:7:96.98:97,0,148
20    18022171    rs1571431    C    T    409.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.207;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.711;QD=12.04;ReadPosRankSum=0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=OVOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462208    GT:AD:DP:GQ:PL    0/1:17,17:34:99:439,0,480
20    18142924    rs3748511    G    A    1636.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.385;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5942;MQ=60.0;MQ0=0;MQRankSum=-0.953;QD=14.62;ReadPosRankSum=0.599;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP2BP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278816    GT:AD:DP:GQ:PL    0/1:56,56:112:99:1667,0,1798
20    18143117    rs1205193    T    G    670.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.94;SNPEFF_AMINO_ACID_CHANGE=V272G;SNPEFF_CODON_CHANGE=gTc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18143021_18143589;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP2BP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000489634    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:704,54,0
20    18143355    rs1205194    C    T    1088.48    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=0.594;DB;DP=62;Dels=0.0;FS=5.978;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.242;QD=17.56;ReadPosRankSum=1.591;SNPEFF_AMINO_ACID_CHANGE=P351;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18143021_18143589;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP2BP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000489634    GT:AD:DP:GQ:PL    0/1:25,36:62:99:1118,0,777
20    18167977    rs2747404    T    C    4705.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7351;MQ=59.4;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=P613;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18167930_18169031;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSRP2BP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000489634    GT:AD:DP:GQ:PL    1/1:0,154:155:99:4705,370,0
20    18296072    rs1033545    T    A    1406.28    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.328;DB;DP=93;Dels=0.0;FS=0.792;HRun=0;HaplotypeScore=1.7128;MQ=60.0;MQ0=0;MQRankSum=0.187;QD=15.12;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=S130T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18295713_18297569;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF133;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402618    GT:AD:DP:GQ:PL    0/1:48,45:93:99:1436,0,1500
20    18364931    rs2424181    A    G    156.11    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.532;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=8.67;ReadPosRankSum=-0.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476058    GT:AD:DP:GQ:PL    0/1:10,8:18:99:186,0,338
20    18364964    rs36048101    A    G    395.90    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.898;QD=14.66;ReadPosRankSum=-0.218;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476058    GT:AD:DP:GQ:PL    0/1:13,14:27:99:426,0,421
20    18370631    rs1033544    T    C    311.66    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.578;QD=17.31;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480488    GT:AD:DP:GQ:PL    0/1:8,10:18:99:342,0,269
20    18393312    rs6075337    C    G    4875.88    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.323;DB;DP=146;Dels=0.0;FS=3.875;HRun=0;HaplotypeScore=0.9998;MQ=59.72;MQ0=0;MQRankSum=1.326;QD=33.17;ReadPosRankSum=1.398;SNPEFF_AMINO_ACID_CHANGE=L255;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18393290_18393479;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377637    GT:AD:DP:GQ:PL    1/1:1,145:146:99:4876,326,0
20    18393499    rs6075338    C    T    1733.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.864;MQ=59.56;MQ0=0;QD=33.34;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000460891    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1767,132,0
20    18393504    rs146951623    G    A    661.77    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=48;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=1.864;MQ=59.52;MQ0=0;MQRankSum=0.681;QD=13.79;ReadPosRankSum=0.165;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:25,23:48:99:692,0,780
20    18395807    rs6045393    G    A    502.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:535,39,0
20    18395988    rs6035037    C    T    1232.07    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.897;DB;DP=95;Dels=0.0;FS=0.8;HRun=0;HaplotypeScore=3.3567;MQ=59.24;MQ0=1;MQRankSum=-0.275;QD=12.97;ReadPosRankSum=-0.268;SNPEFF_AMINO_ACID_CHANGE=G180S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18395971_18396093;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414623    GT:AD:DP:GQ:PL    0/1:54,41:95:99:1262,0,1544
20    18407891    rs142381677    C    T    98.52    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.95;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:5,4:9:99:129,0,172
20    18407970    rs147873048    T    C    76.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    1/1:1,3:4:9.02:109,9,0
20    18414143    rs146902696    G    A    126.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.322;QD=14.03;ReadPosRankSum=0.956;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:4,5:9:73.26:156,0,73
20    18414356    rs6035042    A    G    2719.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6942;MQ=59.49;MQ0=0;MQRankSum=-1.651;QD=30.21;ReadPosRankSum=-0.183;SNPEFF_AMINO_ACID_CHANGE=C153;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18414296_18414409;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357236    GT:AD:DP:GQ:PL    1/1:1,89:90:99:2752,204,0
20    18429497    rs6081147    T    C    72.86    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.02;MQ0=0;MQRankSum=0.0;QD=10.41;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:2,5:7:56.96:103,0,57
20    18429510    .    CA    C    30.44    QDFilter2    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.636;DP=17;FS=0.0;HRun=20;HaplotypeScore=218.8732;IndelType=D;MQ=47.07;MQ0=0;MQRankSum=0.636;QD=1.79;ReadPosRankSum=1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:4,8:17:11.55:69,0,12
20    18432690    rs2424196    T    A    187.82    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.299;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=12.52;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:8,7:15:99:218,0,186
20    18433335    rs41276436    T    C    125.10    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.424;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-0.811;QD=7.82;ReadPosRankSum=0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:6,10:16:99:155,0,212
20    18434214    rs2424199    A    T    72.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.1;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:3,3:6:98.43:103,0,98
20    18435800    rs6045413    G    A    436.10    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=0.138;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.782;QD=11.48;ReadPosRankSum=-0.261;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:21,17:38:99:466,0,692
20    18445963    rs6035051    A    G    2476.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8241;MQ=55.21;MQ0=0;MQRankSum=1.05;QD=29.84;ReadPosRankSum=-0.411;SNPEFF_AMINO_ACID_CHANGE=L14;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18445894_18446021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    1/1:2,81:83:99:2509,154,0
20    18446024    rs6111974    C    A    276.10    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.803;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3304;MQ=47.95;MQ0=0;MQRankSum=0.014;QD=6.9;ReadPosRankSum=-0.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:19,21:40:99:306,0,389
20    18446026    rs116724196    A    C    267.17    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.17;DB;DP=38;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=4.3304;MQ=47.6;MQ0=0;MQRankSum=1.036;QD=6.85;ReadPosRankSum=0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:22,16:38:99:297,0,343
20    18446050    rs111987137    A    ATGTGCACTTATAGC    5140.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=375.5173;IndelType=I;MQ=40.94;MQ0=0;QD=171.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    1/1:8,10:30:87.30:5141,87,0
20    18446051    .    T    C    101.64    PASS    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.335;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.94;MQ0=0;MQRankSum=2.335;QD=3.39;ReadPosRankSum=-3.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262547    GT:AD:DP:GQ:PL    0/1:22,4:30:87.14:132,0,87
20    18448079    rs1474974    C    A    528.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461589    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:562,42,0
20    18460614    rs6035056    A    T    726.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377603    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:759,60,0
20    18460641    rs6081160    G    A    508.80    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.684;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.476;QD=16.41;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377603    GT:AD:DP:GQ:PL    0/1:15,16:31:99:539,0,461
20    18462421    rs1055171    A    G    6978.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=214;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7791;MQ=59.51;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=T280;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18462263_18462454;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLR3F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377603    GT:AD:DP:GQ:PL    1/1:0,214:214:99:6979,536,0
20    18462492    rs4813332    A    G    2707.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=36.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337227    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2740,205,0
20    18462518    rs6111983    C    G    1609.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=58.99;MQ0=0;QD=34.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337227    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1642,120,0
20    18464110    rs3827965    T    C    548.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337227    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:582,48,0
20    18470334    rs151032302    T    C    304.12    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.296;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.061;QD=27.65;ReadPosRankSum=-0.354;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339848    GT:AD:DP:GQ:PL    0/1:2,9:11:44.52:334,0,45
20    18470377    rs139707042    T    C    289.26    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.304;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.14;QD=14.46;ReadPosRankSum=0.912;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339848    GT:AD:DP:GQ:PL    0/1:9,11:20:99:319,0,304
20    18470664    rs3748450    A    G    371.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337227    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:404,30,0
20    18470980    rs2424217    A    G    570.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337227    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:604,45,0
20    18474531    rs144168736    T    C    219.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.027;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.663;QD=15.69;ReadPosRankSum=1.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337227    GT:AD:DP:GQ:PL    0/1:7,7:14:99:250,0,238
20    18477614    rs2247746    A    G    162.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337227    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
20    18477870    rs2247757    T    A    385.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339848    GT:AD:DP:GQ:PL    1/1:0,13:13:36.08:419,36,0
20    18492808    rs184674131    A    G    255.96    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.297;QD=11.63;ReadPosRankSum=0.758;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474619    GT:AD:DP:GQ:PL    0/1:12,10:22:99:286,0,441
20    18496123    rs6045443    G    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474619    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
20    18496536    rs55899031    A    G    32.40    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.63;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474619    GT:AD:DP:GQ:PL    0/1:5,2:7:62.39:62,0,179
20    18505403    rs3762200    G    C    268.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    1/1:0,11:11:24.07:301,24,0
20    18505563    .    C    CT    120.78    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.183;DP=17;FS=0.0;HRun=12;HaplotypeScore=59.3323;IndelType=I;MQ=59.54;MQ0=0;MQRankSum=1.099;QD=7.1;ReadPosRankSum=0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    0/1:9,7:17:99:160,0,115
20    18506616    rs911115    T    C    567.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=25.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    1/1:0,22:22:51.12:600,51,0
20    18506825    rs1555354    C    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    18511174    rs6081188    T    C    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450074    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:161,12,0
20    18511223    rs149544727    G    A    323.65    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.272;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=17.98;ReadPosRankSum=0.996;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450074    GT:AD:DP:GQ:PL    0/1:7,11:18:99:354,0,230
20    18511456    rs6081189    A    G    621.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8232;MQ=54.83;MQ0=0;QD=23.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450074    GT:AD:DP:GQ:PL    1/1:2,25:27:54.16:654,54,0
20    18511458    rs57738665    C    CT    60.04    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=0.377;DB;DP=26;FS=0.0;HRun=14;HaplotypeScore=197.8719;IndelType=I;MQ=54.62;MQ0=0;MQRankSum=-0.377;QD=2.31;ReadPosRankSum=-1.954;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450074    GT:AD:DP:GQ:PL    0/1:19,6:26:85.20:99,0,85
20    18511504    rs3762201    T    C    236.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450074    GT:AD:DP:GQ:PL    1/1:0,10:10:21.05:270,21,0
20    18513422    .    G    T    206.17    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.836;DP=20;Dels=0.0;FS=2.473;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=10.31;ReadPosRankSum=1.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    0/1:11,9:20:99:236,0,393
20    18523145    rs147633561    G    A    364.61    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.271;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.702;QD=19.19;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    0/1:8,11:19:99:395,0,276
20    18523864    rs2295557    C    T    694.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=27.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    1/1:0,25:25:57.16:727,57,0
20    18529107    rs6136406    G    C    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
20    18529233    rs3736775    T    A    416.79    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.543;DB;DP=23;Dels=0.0;FS=3.067;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.102;QD=18.12;ReadPosRankSum=-0.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    0/1:9,14:23:99:447,0,296
20    18541097    rs6514907    A    G    138.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC23B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262544    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:172,15,0
20    18576912    rs1884875    C    G    508.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377452    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:541,42,0
20    18608937    rs3818221    C    G    483.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377452    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:516,39,0
20    18724990    rs3827973    G    A    204.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DTD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377452    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
20    18794714    rs1053834    C    T    965.53    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.063;DB;DP=63;Dels=0.0;FS=2.07;HRun=0;HaplotypeScore=2.1188;MQ=59.27;MQ0=0;MQRankSum=0.077;QD=15.33;ReadPosRankSum=0.289;SNPEFF_AMINO_ACID_CHANGE=T85;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18794370_18795033;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf79;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377428    GT:AD:DP:GQ:PL    0/1:30,32:63:99:996,0,964
20    18794754    rs1053839    C    T    494.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.971;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=59.16;MQ0=0;MQRankSum=1.059;QD=8.98;ReadPosRankSum=-0.149;SNPEFF_AMINO_ACID_CHANGE=P99S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_18794370_18795033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf79;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377428    GT:AD:DP:GQ:PL    0/1:35,20:55:99:524,0,1189
20    18806046    rs6136525    C    T    253.26    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.533;QD=19.48;ReadPosRankSum=2.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278779    GT:AD:DP:GQ:PL    0/1:5,8:13:99:283,0,129
20    18810705    rs6136530    C    T    638.39    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.178;DB;DP=51;Dels=0.0;FS=1.203;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.089;QD=12.52;ReadPosRankSum=0.168;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_20_18810663_18810797;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf78;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278779    GT:AD:DP:GQ:PL    0/1:30,21:51:99:668,0,987
20    19261623    rs1569767    G    A    532.63    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=4.433;DB;DP=28;Dels=0.0;FS=6.058;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.487;QD=19.02;ReadPosRankSum=-0.627;SNPEFF_AMINO_ACID_CHANGE=V55I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_19261603_19261731;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    0/1:12,16:28:99:563,0,315
20    19560555    rs11087288    GA    G    335.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=22.2633;IndelType=D;MQ=60.0;MQ0=0;QD=37.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:378,27,0
20    19560664    rs3790261    G    A    666.82    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=3.916;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=1.851;QD=12.12;ReadPosRankSum=1.817;SNPEFF_AMINO_ACID_CHANGE=A123;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_19560644_19560718;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    0/1:32,23:55:99:697,0,786
20    19560940    rs3790262    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
20    19565693    rs3790267    G    A    568.88    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.37;DB;DP=45;Dels=0.0;FS=1.817;HRun=0;HaplotypeScore=1.8311;MQ=57.92;MQ0=0;MQRankSum=0.314;QD=12.64;ReadPosRankSum=-0.281;SNPEFF_AMINO_ACID_CHANGE=V168I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_19565615_19565699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    0/1:21,24:45:99:599,0,582
20    19570511    rs6081671    A    G    207.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
20    19570658    rs62200269    T    C    753.53    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=2.689;DB;DP=52;Dels=0.0;FS=2.506;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.028;QD=14.49;ReadPosRankSum=-1.055;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    0/1:24,28:52:99:784,0,743
20    19570980    rs6046197    T    C    136.80    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=12.44;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    0/1:6,5:11:99:167,0,176
20    19634732    rs3790278    G    A    398    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.223;DB;DP=30;Dels=0.0;FS=5.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.172;QD=13.27;ReadPosRankSum=-0.042;SNPEFF_AMINO_ACID_CHANGE=L213;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_19634706_19634780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    0/1:17,13:30:99:428,0,507
20    19634747    rs3790279    T    C    480.59    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.136;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.447;QD=13.73;ReadPosRankSum=0.381;SNPEFF_AMINO_ACID_CHANGE=I218;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_19634706_19634780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    0/1:19,16:35:99:511,0,514
20    19677615    rs113059140    AAGGGAGGGAGGG    A    868.47    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.448;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=164.2833;IndelType=D;MQ=51.18;MQ0=0;MQRankSum=-0.579;QD=66.81;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    0/1:3,10:13:64.23:908,0,64
20    19677714    rs1884826    G    A    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=63.51;MQ0=0;QD=12.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
20    19701943    rs2277866    A    C    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC24A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328041    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
20    19970705    rs2076584    C    T    671.08    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=1.582;DB;DP=38;Dels=0.0;FS=5.198;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.222;QD=17.66;ReadPosRankSum=0.931;SNPEFF_AMINO_ACID_CHANGE=H173;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_19970650_19970955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440354    GT:AD:DP:GQ:PL    0/1:16,22:38:99:701,0,422
20    19970888    rs35151304    G    A    328.04    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=1.957;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.08;QD=8.87;ReadPosRankSum=-0.461;SNPEFF_AMINO_ACID_CHANGE=P234;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_19970650_19970955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440354    GT:AD:DP:GQ:PL    0/1:24,13:37:99:358,0,735
20    19971112    rs199604    G    A    120.38    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.08;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255006    GT:AD:DP:GQ:PL    0/1:1,4:5:19.30:150,0,19
20    19998851    rs67901270    AT    A    50.01    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=10;FS=0.0;HRun=12;HaplotypeScore=25.1146;IndelType=D;MQ=57.66;MQ0=0;MQRankSum=0.876;QD=5.0;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310450    GT:AD:DP:GQ:PL    0/1:5,5:10:89.04:89,0,94
20    20007325    rs200177    T    G    214.77    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.105;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.085;QD=8.59;ReadPosRankSum=-0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAA20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481837    GT:AD:DP:GQ:PL    0/1:16,9:25:99:245,0,602
20    20022908    rs150139902    G    A    604.47    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=0.813;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=-0.379;QD=15.11;ReadPosRankSum=-1.679;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377327    GT:AD:DP:GQ:PL    0/1:19,21:40:99:634,0,577
20    20030870    rs2073123    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377327    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
20    20032998    rs2255255    T    C    224.79    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=1.194;DB;DP=27;Dels=0.0;FS=1.583;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.136;QD=8.33;ReadPosRankSum=-0.029;SNPEFF_AMINO_ACID_CHANGE=T146A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_20032936_20033366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNKL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377327    GT:AD:DP:GQ:PL    0/1:19,8:27:99:255,0,501
20    20033137    rs2255258    T    A    478.11    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.332;DB;DP=34;Dels=0.0;FS=1.428;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.199;QD=14.06;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=Q111H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_20032936_20033402;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNKL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377340    GT:AD:DP:GQ:PL    0/1:16,18:34:99:508,0,461
20    20033242    rs2273057    A    T    77.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=16;Dels=0.0;FS=6.41;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.705;QD=4.82;ReadPosRankSum=-2.874;SNPEFF_AMINO_ACID_CHANGE=V64;SNPEFF_CODON_CHANGE=gtT/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_20032936_20033366;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNKL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377327    GT:AD:DP:GQ:PL    0/1:10,6:16:99:107,0,293
20    20033319    rs2273058    A    G    147.85    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=13.44;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=F39L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_20032936_20033366;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNKL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000377327    GT:AD:DP:GQ:PL    0/1:6,5:11:99:178,0,141
20    20033367    rs7508949    C    G    98.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=6.854;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.99;ReadPosRankSum=-0.729;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNKL1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000377327    GT:AD:DP:GQ:PL    0/1:4,5:9:99:129,0,131
20    20033380    rs3817995    A    G    70.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=3.136;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.368;QD=8.84;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=S30;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_20032936_20033402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRNKL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000377340    GT:AD:DP:GQ:PL    0/1:4,4:8:99:101,0,142
20    20033423    rs6046572    G    A    69.39    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.91;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,147
20    20037222    rs1509573    T    C    452.01    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=3.092;DB;DP=29;Dels=0.0;FS=1.992;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=15.59;ReadPosRankSum=0.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    0/1:13,16:29:99:482,0,371
20    20056038    rs73619878    T    TA    495.38    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.396;DB;DP=37;FS=0.0;HRun=2;HaplotypeScore=89.8377;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=-1.636;QD=13.39;ReadPosRankSum=-0.385;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475466    GT:AD:DP:GQ:PL    0/1:22,15:37:99:534,0,673
20    20071362    rs57605712    A    T    72.79    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.6455;MQ=48.92;MQ0=0;MQRankSum=0.278;QD=4.55;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    0/1:10,4:16:99:103,0,192
20    20071634    rs6046614    T    C    2059.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2092,163,0
20    20079251    rs10651068    C    CAAA    666.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.624;DB;DP=33;FS=0.0;HRun=19;HaplotypeScore=398.2646;IndelType=I;MQ=41.13;MQ0=0;MQRankSum=1.04;QD=20.19;ReadPosRankSum=0.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:17,8:33:54.29:708,54,0
20    20123624    rs7265615    G    T    134.19    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=22.36;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    0/1:1,5:6:23.70:164,0,24
20    20139951    rs11475376    GC    G    1049.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=1;HaplotypeScore=71.7458;IndelType=D;MQ=60.0;MQ0=0;QD=40.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1091,78,0
20    20140196    rs2179823    T    C    754.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,20:20:60.17:788,60,0
20    20144772    rs6081901    G    A    896.45    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=3.846;DB;DP=65;Dels=0.0;FS=3.54;HRun=0;HaplotypeScore=1.2434;MQ=59.65;MQ0=0;MQRankSum=-0.337;QD=13.79;ReadPosRankSum=-0.97;SNPEFF_AMINO_ACID_CHANGE=V324I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_20144694_20144872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340348    GT:AD:DP:GQ:PL    0/1:33,32:65:99:926,0,923
20    20146851    rs6046678    G    A    108.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
20    20146875    rs6046679    C    T    132.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
20    20147304    rs2273123    C    G    54.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340348    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:86,6,0
20    20149769    rs2273126    C    T    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340348    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
20    20150182    rs6112802    A    T    504.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340348    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:538,42,0
20    20152462    rs996197    A    C    2522.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.79;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:1,76:77:99:2556,193,0
20    20152581    rs2328500    G    A    1086.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1120,84,0
20    20168497    rs2179825    A    G    1435.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1469,108,0
20    20208850    rs10485596    C    T    653.90    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.737;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.105;QD=12.58;ReadPosRankSum=-1.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493330    GT:AD:DP:GQ:PL    0/1:29,23:52:99:684,0,957
20    20341180    rs2274672    T    C    514.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:547,42,0
20    20341191    rs2274673    C    T    382.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245957    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:415,33,0
20    20350516    rs6137007    T    G    360.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=INSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310227    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:393,30,0
20    20377421    rs11426947    A    AC    2087.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.0;HRun=5;HaplotypeScore=125.8038;IndelType=I;MQ=60.24;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202677    GT:AD:DP:GQ:PL    1/1:5,54:59:99:2130,163,0
20    20493222    rs35039408    G    A    1626.85    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.54;DB;DP=120;Dels=0.0;FS=1.513;HRun=0;HaplotypeScore=1.4105;MQ=59.81;MQ0=0;MQRankSum=0.582;QD=13.56;ReadPosRankSum=1.077;SNPEFF_AMINO_ACID_CHANGE=P1597;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_20493157_20493928;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000202677    GT:AD:DP:GQ:PL    0/1:63,57:120:99:1657,0,2060
20    21117240    rs112919567    GT    G    814.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=58;FS=0.0;HRun=13;HaplotypeScore=227.8252;IndelType=D;MQ=59.5;MQ0=0;MQRankSum=0.603;QD=13.8;ReadPosRankSum=0.753;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=rRNA;SNPEFF_GENE_NAME=5S_rRNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362639    GT:AD:DP:GQ:PL    1/1:14,40:58:99:856,102,0
20    21126194    rs6047271    C    G    383.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP5-872K7.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434043    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:417,30,0
20    21142353    rs6047279    T    C    416.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RPS15AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457423    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:450,33,0
20    21142441    rs11482798    G    GA    433.37    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.675;DB;DP=41;FS=3.761;HRun=13;HaplotypeScore=278.8401;IndelType=I;MQ=57.71;MQ0=0;MQRankSum=-1.586;QD=10.57;ReadPosRankSum=-0.989;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RPS15AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457423    GT:AD:DP:GQ:PL    0/1:28,13:41:30.14:472,0,30
20    21142454    rs11482592    A    AC    678.74    PASS    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.296;DB;DP=56;FS=0.0;HRun=4;HaplotypeScore=379.5363;IndelType=I;MQ=57.91;MQ0=0;MQRankSum=0.188;QD=12.12;ReadPosRankSum=-0.366;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RPS15AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457423    GT:AD:DP:GQ:PL    0/1:43,13:56:99:718,0,217
20    21142523    rs4815025    C    G    3277.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.445;MQ=59.1;MQ0=0;QD=31.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RPS15AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457423    GT:AD:DP:GQ:PL    1/1:0,102:103:99:3277,238,0
20    21142813    rs2236178    T    C    2579.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=33.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RPS15AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457423    GT:AD:DP:GQ:PL    1/1:1,76:77:99:2613,208,0
20    21143935    rs6047280    G    T    745.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=35.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLK1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445992    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:779,60,0
20    21186161    rs11087346    A    AG    1557.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=2;HaplotypeScore=87.99;IndelType=I;MQ=57.77;MQ0=0;QD=38.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLK1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246027    GT:AD:DP:GQ:PL    1/1:2,38:40:99:1599,111,0
20    21195327    .    C    A    663.31    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DP=74;Dels=0.0;FS=11.872;HRun=2;HaplotypeScore=1.4942;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=8.96;ReadPosRankSum=-0.664;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLK1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246027    GT:AD:DP:GQ:PL    0/1:45,29:74:99:693,0,1462
20    21227314    rs6047326    C    T    750.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PLK1S1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246027    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:784,57,0
20    21307107    rs2296728    A    G    1362.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=29.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1396,105,0
20    21313109    rs143858204    T    TA    307.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=11;HaplotypeScore=38.2884;IndelType=I;MQ=60.0;MQ0=0;QD=19.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:4,11:16:35.91:349,36,0
20    21319828    rs202844    A    G    1204.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:0,31:31:90.30:1238,90,0
20    21319888    .    G    A    140.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.098;QD=14.08;ReadPosRankSum=1.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,168
20    21321294    rs202845    C    T    981.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:0,28:28:81.26:1015,81,0
20    21328715    rs11477078    GT    G    247.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=8;HaplotypeScore=24.1568;IndelType=D;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:0,10:10:30.05:290,30,0
20    21330315    rs202850    T    G    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
20    21336825    rs3787500    G    A    1736.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=59.56;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1769,132,0
20    21346441    rs11467475    TATATA    T    418.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=48.5135;IndelType=D;MQ=53.58;MQ0=0;QD=52.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:461,24,0
20    21362703    rs11476840    TA    T    1070.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=4;HaplotypeScore=124.5126;IndelType=D;MQ=60.32;MQ0=0;QD=31.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:3,31:34:93.28:1112,93,0
20    21362758    rs6047417    T    G    530.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377191    GT:AD:DP:GQ:PL    1/1:0,18:18:48.14:563,48,0
20    22562674    rs1212275    T    C    425.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.59;SNPEFF_AMINO_ACID_CHANGE=Q282;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_22562395_22563433;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444877    GT:AD:DP:GQ:PL    1/1:0,15:16:33.11:458,33,0
20    23016692    .    G    C    40.16    QDFilter2    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.144;DP=60;Dels=0.0;FS=50.219;HRun=1;HaplotypeScore=1.9648;MQ=47.22;MQ0=0;MQRankSum=-3.233;QD=0.67;ReadPosRankSum=-2.383;SNPEFF_AMINO_ACID_CHANGE=R191P;SNPEFF_CODON_CHANGE=cGc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23016057_23017314;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSTR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255008    GT:AD:DP:GQ:PL    0/1:36,24:60:70.15:70,0,1032
20    23064279    rs6076019    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246006    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    23064810    rs11087413    C    T    510.91    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.241;DB;DP=29;Dels=0.0;FS=6.354;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.899;QD=17.62;ReadPosRankSum=-0.504;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD93;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246006    GT:AD:DP:GQ:PL    0/1:13,16:29:99:541,0,445
20    23065209    rs3746731    G    A    314.26    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.971;DB;DP=33;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=0.0;MQ=58.15;MQ0=0;MQRankSum=-0.092;QD=9.52;ReadPosRankSum=1.013;SNPEFF_AMINO_ACID_CHANGE=P541S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23064896_23066977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD93;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246006    GT:AD:DP:GQ:PL    0/1:20,13:33:99:344,0,720
20    23065342    rs3746732    A    G    185.16    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9977;MQ=59.34;MQ0=0;MQRankSum=0.966;QD=5.29;ReadPosRankSum=-0.562;SNPEFF_AMINO_ACID_CHANGE=R496;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23064896_23066977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246006    GT:AD:DP:GQ:PL    0/1:20,14:35:99:215,0,631
20    23065879    rs34170527    G    A    605.96    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=3.73;DB;DP=49;Dels=0.0;FS=2.722;HRun=0;HaplotypeScore=1.9946;MQ=59.62;MQ0=0;MQRankSum=-1.19;QD=12.37;ReadPosRankSum=-1.75;SNPEFF_AMINO_ACID_CHANGE=C317;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23064896_23066977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD93;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246006    GT:AD:DP:GQ:PL    0/1:25,24:49:99:636,0,713
20    23335120    rs77711910    CTT    C    323.48    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=17;FS=2.392;HRun=3;HaplotypeScore=56.8244;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=-0.529;QD=19.03;ReadPosRankSum=-1.01;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000254998    GT:AD:DP:GQ:PL    0/1:8,9:17:99:363,0,395
20    23345844    rs6048760    A    C    492.61    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.134;DB;DP=42;Dels=0.0;FS=6.711;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.531;QD=11.73;ReadPosRankSum=0.051;SNPEFF_AMINO_ACID_CHANGE=Q275P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23345000_23346384;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZF1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338121    GT:AD:DP:GQ:PL    0/1:23,19:42:99:523,0,796
20    23347553    rs999072    C    T    109.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.7;ReadPosRankSum=0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424216    GT:AD:DP:GQ:PL    0/1:4,4:8:99:140,0,140
20    23349749    rs3746733    C    T    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424216    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,72
20    23350525    rs17830281    C    T    120.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461789    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:153,12,0
20    23358364    rs6137914    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GZF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338121    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    23360369    rs6137917    G    A    71.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.988;QD=11.86;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377026    GT:AD:DP:GQ:PL    0/1:3,3:6:85.64:101,0,86
20    23375907    rs2424533    C    T    97.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.134;QD=8.13;ReadPosRankSum=0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487502    GT:AD:DP:GQ:PL    0/1:8,4:12:99:128,0,286
20    23377642    rs3736755    C    T    292.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=28;Dels=0.0;FS=11.146;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.752;QD=10.44;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377026    GT:AD:DP:GQ:PL    0/1:14,14:28:99:322,0,509
20    23420797    rs45509795    G    A    72.16    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.43;ReadPosRankSum=-1.231;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CSTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472140    GT:AD:DP:GQ:PL    0/1:2,3:5:59.03:102,0,59
20    23421101    rs17757442    G    A    800.58    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DB;DP=72;Dels=0.0;FS=0.927;HRun=1;HaplotypeScore=0.9734;MQ=59.68;MQ0=0;MQRankSum=-0.957;QD=11.12;ReadPosRankSum=0.8;SNPEFF_AMINO_ACID_CHANGE=R26K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23420859_23421123;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CSTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538508    GT:AD:DP:GQ:PL    0/1:40,32:72:99:831,0,1127
20    23424613    rs3746736    T    C    698.87    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.378;DB;DP=45;Dels=0.0;FS=4.454;HRun=1;HaplotypeScore=2.4558;MQ=59.59;MQ0=0;MQRankSum=1.62;QD=15.19;ReadPosRankSum=-1.023;SNPEFF_AMINO_ACID_CHANGE=W88R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23424571_23424681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CSTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246020    GT:AD:DP:GQ:PL    0/1:19,26:45:99:729,0,555
20    23424638    rs3746737    C    T    762.62    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=2.786;DB;DP=48;Dels=0.0;FS=4.278;HRun=0;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=-0.204;QD=15.56;ReadPosRankSum=-2.098;SNPEFF_AMINO_ACID_CHANGE=T96M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23424571_23424681;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CSTL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246020    GT:AD:DP:GQ:PL    0/1:20,27:48:99:793,0,565
20    23472391    rs2983288    A    G    3628.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.75;SNPEFF_AMINO_ACID_CHANGE=T29;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23472162_23472535;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246012    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3628,289,0
20    23476412    rs11482296    CTT    C    94.69    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.386;DB;DP=17;FS=0.0;HRun=17;HaplotypeScore=118.198;IndelType=D;MQ=48.77;MQ0=0;MQRankSum=-0.296;QD=5.57;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246012    GT:AD:DP:GQ:PL    0/1:4,11:17:18.47:134,0,18
20    23515198    rs2983620    T    C    36.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-218C14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376992    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
20    23517691    rs2983632    G    A    169.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-218C14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376992    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
20    23517743    rs2983633    G    T    125.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-218C14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376992    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
20    23522173    rs35649155    CCT    C    311.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=26.5904;IndelType=D;MQ=60.0;MQ0=0;QD=38.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-218C14.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376992    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:354,24,0
20    23526288    rs911125    A    G    87.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9LP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376987    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:119,9,0
20    23529377    rs3004129    G    A    1343.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=58.81;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9LP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376987    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1377,102,0
20    23529388    rs2983611    C    T    1348.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9LP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376987    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1381,105,0
20    23546910    rs2295565    G    A    204.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376979    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
20    23546941    rs2295566    T    A    94.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376979    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:127,12,0
20    23548774    rs2983617    T    C    749.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376979    GT:AD:DP:GQ:PL    1/1:0,22:22:63.18:782,63,0
20    23584116    rs726217    G    A    242.87    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.003;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=18.68;ReadPosRankSum=-0.694;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376971    GT:AD:DP:GQ:PL    0/1:4,9:13:99:273,0,129
20    23586184    rs2983639    T    C    755.53    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=2.352;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=59.64;MQ0=0;MQRankSum=0.381;QD=11.81;ReadPosRankSum=-0.394;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376971    GT:AD:DP:GQ:PL    0/1:37,27:64:99:786,0,1201
20    23586360    rs2983640    G    A    1572.97    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=1.372;DB;DP=134;Dels=0.0;FS=0.675;HRun=1;HaplotypeScore=0.9578;MQ=59.83;MQ0=0;MQRankSum=-0.564;QD=11.74;ReadPosRankSum=-0.863;SNPEFF_AMINO_ACID_CHANGE=L48F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23586247_23586513;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376971    GT:AD:DP:GQ:PL    0/1:71,62:134:99:1603,0,2100
20    23586547    rs62207039    C    T    393.21    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=3.436;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.59;QD=14.56;ReadPosRankSum=1.846;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376971    GT:AD:DP:GQ:PL    0/1:14,13:27:99:423,0,340
20    23666690    rs2282378    C    G    203.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.33;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217423    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
20    23667657    rs6048993    A    G    328.46    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.933;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9243;MQ=49.49;MQ0=0;MQRankSum=-2.203;QD=10.26;ReadPosRankSum=1.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217423    GT:AD:DP:GQ:PL    0/1:17,15:32:99:358,0,593
20    23669305    rs10854252    C    G    171.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.884;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.237;QD=11.45;ReadPosRankSum=-0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217423    GT:AD:DP:GQ:PL    0/1:9,6:15:99:202,0,330
20    23669630    rs7267397    A    G    536.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.77;MQ0=0;QD=33.52;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_23669379_23669677;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217423    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:569,45,0
20    23669663    rs111248870    C    T    385.93    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=1.734;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.64;MQ0=0;MQRankSum=1.734;QD=27.57;ReadPosRankSum=-1.369;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_23669379_23669677;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217423    GT:AD:DP:GQ:PL    0/1:2,12:14:28.29:416,0,28
20    23729486    rs4990306    T    G    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.5;MQ0=0;QD=16.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
20    23729496    rs4465840    C    T    41.87    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.46;MQ0=0;QD=8.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:73,6,0
20    23729500    rs4422222    T    C    77.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.49;MQ0=0;QD=12.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:0,6:6:9.02:110,9,0
20    23729514    rs4544516    C    T    111.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.82;MQ0=0;QD=13.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:0,8:8:15:144,15,0
20    23729534    rs4416286    C    T    127.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.67;MQ0=0;QD=14.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:0,9:9:18:160,18,0
20    23729536    rs4268993    G    A    127.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.67;MQ0=0;QD=14.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:0,9:9:18:160,18,0
20    23729555    rs5841003    G    GCA    509.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=120.566;IndelType=I;MQ=33.78;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:3,12:12:33.11:552,33,0
20    23729722    rs3188314    G    T    3294.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.2381;MQ=43.45;MQ0=5;QD=26.36;SNPEFF_AMINO_ACID_CHANGE=R91;SNPEFF_CODON_CHANGE=cgC/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23729653_23729766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:3,122:125:99:3295,271,0
20    23731426    rs13045477    C    T    498.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.838;DB;DP=36;Dels=0.0;FS=1.48;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.585;QD=13.86;ReadPosRankSum=-1.819;SNPEFF_AMINO_ACID_CHANGE=E26;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23731276_23731574;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    0/1:18,18:36:99:529,0,487
20    23731494    rs6076122    A    G    535.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_AMINO_ACID_CHANGE=Y4H;SNPEFF_CODON_CHANGE=Tat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23731276_23731574;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:0,16:16:45.11:568,45,0
20    23731560    rs6076123    C    T    161.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.32;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_23731276_23731574;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000304749    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
20    23731589    rs113896553    G    C    41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.67;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398402    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:71,0,24
20    23805720    rs6049156    T    C    118.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=51.15;MQ0=0;MQRankSum=1.638;QD=14.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304725    GT:AD:DP:GQ:PL    0/1:4,4:8:99:148,0,101
20    23805832    rs6036548    G    A    2194.35    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=64;Dels=0.0;FS=7.993;HRun=0;HaplotypeScore=0.0;MQ=58.88;MQ0=0;MQRankSum=1.624;QD=34.29;ReadPosRankSum=0.487;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304725    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2227,138,0
20    23806183    rs35969757    A    G    32.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304725    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
20    23807028    rs4407312    A    C    830.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304725    GT:AD:DP:GQ:PL    1/1:0,22:22:66.21:863,66,0
20    23856663    rs4813509    T    C    347.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304710    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:381,30,0
20    23858334    rs2071444    G    A    68.76    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.322;QD=8.6;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304710    GT:AD:DP:GQ:PL    0/1:5,3:8:98.76:99,0,178
20    23860178    rs1799841    A    G    1581.40    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=0.892;DB;DP=109;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6624;MQ=59.79;MQ0=0;MQRankSum=-0.034;QD=14.51;ReadPosRankSum=-0.742;SNPEFF_AMINO_ACID_CHANGE=C46R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_23860083_23860387;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000304710    GT:AD:DP:GQ:PL    0/1:47,62:109:99:1611,0,1480
20    23969972    rs7265568    A    G    104.95    PASS    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.391;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.27;MQ0=0;MQRankSum=-3.294;QD=3.62;ReadPosRankSum=0.317;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGTLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278765    GT:AD:DP:GQ:PL    0/1:21,8:29:99:135,0,668
20    23969984    rs2424610    G    T    577.05    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.627;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.91;MQ0=0;MQRankSum=3.021;QD=18.61;ReadPosRankSum=0.275;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGTLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278765    GT:AD:DP:GQ:PL    0/1:10,21:31:99:607,0,240
20    23970241    rs13044301    A    G    216.29    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.449;DB;DP=49;Dels=0.0;FS=1.15;HRun=0;HaplotypeScore=1.4942;MQ=52.06;MQ0=0;MQRankSum=-0.886;QD=4.41;ReadPosRankSum=-2.199;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGTLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278765    GT:AD:DP:GQ:PL    0/1:31,18:49:99:246,0,741
20    23970243    rs13044302    A    T    256.07    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.191;DB;DP=49;Dels=0.0;FS=1.192;HRun=0;HaplotypeScore=0.5784;MQ=52.06;MQ0=0;MQRankSum=-0.754;QD=5.23;ReadPosRankSum=-2.194;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGTLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278765    GT:AD:DP:GQ:PL    0/1:30,18:49:99:286,0,760
20    23976463    rs2424611    C    T    305.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.88;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:338,27,0
20    24524218    rs4815274    C    G    1722.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.54;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNDIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376862    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1756,129,0
20    24524245    rs4813519    A    G    1324.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=59.48;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNDIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376862    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1357,108,0
20    24645939    rs2892217    G    A    854.67    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=4.312;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7719;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=13.35;ReadPosRankSum=0.397;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNDIG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376862    GT:AD:DP:GQ:PL    0/1:34,30:64:99:885,0,933
20    24929947    rs227652    C    T    91.20    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=6.08;ReadPosRankSum=-1.632;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_20_24929866_24930211;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376835    GT:AD:DP:GQ:PL    0/1:11,4:15:99:121,0,395
20    24930085    rs227653    G    A    537.06    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=58.23;MQ0=0;MQRankSum=1.413;QD=14.52;ReadPosRankSum=0.988;SNPEFF_AMINO_ACID_CHANGE=E4K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_24929866_24930211;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376835    GT:AD:DP:GQ:PL    0/1:18,19:37:99:567,0,579
20    24937726    rs6076305    T    G    109.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=18.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376835    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:142,12,0
20    24938195    rs13041643    C    T    96.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=9.69;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376835    GT:AD:DP:GQ:PL    0/1:5,5:10:99:127,0,170
20    24938266    rs45468392    C    G    99.98    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=12.5;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376835    GT:AD:DP:GQ:PL    0/1:3,5:8:99:130,0,99
20    24939590    rs1056033    G    C    723.69    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.615;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.459;QD=13.16;ReadPosRankSum=1.463;SNPEFF_AMINO_ACID_CHANGE=L112;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_24939564_24939680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376835    GT:AD:DP:GQ:PL    0/1:28,27:55:99:754,0,860
20    24939764    rs45556041    C    T    427.05    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.898;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.05;MQ0=0;MQRankSum=-1.435;QD=17.79;ReadPosRankSum=-0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217456    GT:AD:DP:GQ:PL    0/1:10,14:24:99:457,0,237
20    24944933    rs761368    T    C    203.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CST7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376835    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
20    24949944    rs6138438    G    C    30.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.09;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217456    GT:AD:DP:GQ:PL    0/1:3,3:6:60.51:61,0,99
20    24950373    rs2064404    A    C    833.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217456    GT:AD:DP:GQ:PL    1/1:0,24:24:69.20:866,69,0
20    24950574    rs4815353    G    C    42.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217456    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
20    24954162    rs66649227    AG    A    143.05    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=21.6619;IndelType=D;MQ=62.36;MQ0=0;MQRankSum=1.159;QD=15.89;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217456    GT:AD:DP:GQ:PL    0/1:4,5:9:99:182,0,165
20    24959385    rs6083703    A    C    58.89    QDFilter2    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=3.109;DB;DP=48;Dels=0.0;FS=13.75;HRun=8;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=0.075;QD=1.2;ReadPosRankSum=-0.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217456    GT:AD:DP:GQ:PL    0/1:21,27:48:88.88:89,0,529
20    24959386    rs56312312    C    A    448.78    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.119;DB;DP=52;Dels=0.0;FS=12.665;HRun=1;HaplotypeScore=2.1877;MQ=60.0;MQ0=0;MQRankSum=-0.03;QD=8.63;ReadPosRankSum=1.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217456    GT:AD:DP:GQ:PL    0/1:31,21:52:99:479,0,755
20    24973383    rs6138456    A    G    42.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.25;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447138    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:73,0,30
20    24993414    rs6132785    T    C    594.99    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=58;Dels=0.0;FS=2.588;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;MQRankSum=-0.593;QD=10.26;ReadPosRankSum=-0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    0/1:34,24:58:99:625,0,999
20    24994289    rs6050249    C    T    93.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.568;QD=9.34;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=V283M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_24994172_24994298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376727    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,187
20    25000446    rs2179732    A    T    122.42    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=24.48;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    0/1:1,4:5:24.96:152,0,25
20    25003936    rs41315094    G    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
20    25004071    rs4813543    G    T    381.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:415,30,0
20    25011423    rs6050259    T    C    347.56    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=0.402;QD=10.22;ReadPosRankSum=-1.872;SNPEFF_AMINO_ACID_CHANGE=A118;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_25011395_25013308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537502    GT:AD:DP:GQ:PL    0/1:20,14:34:99:378,0,693
20    25011639    rs60849220    A    G    33.56    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=4.79;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=F46;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_25011395_25013308;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537502    GT:AD:DP:GQ:PL    0/1:2,5:7:63.55:64,0,72
20    25027526    rs6083730    G    A    576.92    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=2.423;DB;DP=45;Dels=0.0;FS=6.234;HRun=0;HaplotypeScore=1.8914;MQ=58.97;MQ0=0;MQRankSum=-0.648;QD=12.82;ReadPosRankSum=-0.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    0/1:24,21:45:99:607,0,654
20    25027587    rs45574242    G    C    376.65    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.952;QD=12.99;ReadPosRankSum=0.708;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    0/1:16,13:29:99:407,0,492
20    25027630    rs6106989    G    A    94.90    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.699;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=5.93;ReadPosRankSum=-1.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    0/1:11,5:16:99:125,0,396
20    25027692    rs6115015    G    A    32.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=4.7;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    0/1:5,2:7:62.92:63,0,183
20    25038372    rs62217194    G    A    296.97    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.091;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.66;MQ0=0;MQRankSum=0.255;QD=9.9;ReadPosRankSum=0.534;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323482    GT:AD:DP:GQ:PL    0/1:16,14:30:99:327,0,446
20    25187073    rs34400168    A    G    371.78    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.27;QD=18.59;ReadPosRankSum=0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354989    GT:AD:DP:GQ:PL    0/1:8,12:20:99:402,0,241
20    25195509    rs6050446    A    G    719.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_AMINO_ACID_CHANGE=K122E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_25195503_25195578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525986    GT:AD:DP:GQ:PL    1/1:0,25:25:60.16:752,60,0
20    25197982    rs4815394    T    C    176    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ENTPD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418890    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
20    25228686    .    T    C    60.31    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=15.08;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216962    GT:AD:DP:GQ:PL    0/1:1,3:4:24.10:90,0,24
20    25249734    rs13038092    A    G    420.76    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.195;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.75;MQ0=0;MQRankSum=-0.281;QD=12.02;ReadPosRankSum=-0.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PYGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216962    GT:AD:DP:GQ:PL    0/1:16,19:35:99:451,0,530
20    25274937    .    G    A    150.81    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.164;QD=9.43;ReadPosRankSum=-0.212;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376542    GT:AD:DP:GQ:PL    0/1:7,9:16:99:181,0,198
20    25275870    rs2258720    A    G    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339157    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
20    25288505    rs884613    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450393    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
20    25288632    rs6107027    G    A    1543.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_AMINO_ACID_CHANGE=R241;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_25288602_25288681;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000526543    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1577,114,0
20    25295787    rs2297496    T    C    116.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339157    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
20    25320228    rs6050544    T    A    3317.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7465;MQ=60.0;MQ0=0;QD=36.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABHD12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339157    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3318,250,0
20    25388186    rs2261177    G    C    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GINS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262460    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
20    25398790    rs6076347    G    A    2167.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.73;MQ0=0;QD=30.96;SNPEFF_AMINO_ACID_CHANGE=V97I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_25398741_25398831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GINS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262460    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2200,160,0
20    25398876    rs4815425    G    C    1005.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GINS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473460    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1038,75,0
20    25442388    rs62211493    T    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NINL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278886    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:82,6,0
20    25460725    rs34345105    C    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NINL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489780    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
20    25484623    rs13044759    G    A    1535.87    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=3.928;DB;DP=142;Dels=0.0;FS=9.178;HRun=1;HaplotypeScore=0.5784;MQ=59.84;MQ0=0;MQRankSum=-0.683;QD=10.82;ReadPosRankSum=-0.113;SNPEFF_AMINO_ACID_CHANGE=R276W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_25484588_25484740;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NINL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278886    GT:AD:DP:GQ:PL    0/1:85,56:142:99:1566,0,2545
20    25733278    rs77537367    C    T    250.75    QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=135;Dels=0.0;FS=40.375;HRun=2;HaplotypeScore=1.8561;MQ=47.88;MQ0=5;MQRankSum=-7.37;QD=1.86;ReadPosRankSum=-1.813;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:98,36:135:99:281,0,3106
20    25733297    rs75834297    G    C    448.62    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.52;DB;DP=144;Dels=0.0;FS=28.274;HRun=0;HaplotypeScore=12.2154;MQ=46.71;MQ0=3;MQRankSum=-7.942;QD=3.12;ReadPosRankSum=-2.731;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:97,47:144:99:479,0,2962
20    25733312    rs79064364    G    A    589.92    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=146;Dels=0.0;FS=7.01;HRun=1;HaplotypeScore=12.1459;MQ=47.07;MQ0=5;MQRankSum=-8.935;QD=4.04;ReadPosRankSum=-1.637;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:89,57:146:99:620,0,2876
20    25733331    rs76343803    C    T    934.72    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=5.944;DB;DP=154;Dels=0.0;FS=4.853;HRun=1;HaplotypeScore=1.4105;MQ=46.08;MQ0=6;MQRankSum=-9.277;QD=6.07;ReadPosRankSum=0.266;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:87,67:154:99:965,0,2498
20    25733334    rs79640338    G    A    923.51    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=0.106;DB;DP=153;Dels=0.0;FS=9.328;HRun=3;HaplotypeScore=1.4105;MQ=46.01;MQ0=6;MQRankSum=-9.158;QD=6.04;ReadPosRankSum=0.787;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:86,67:153:99:954,0,2677
20    25733418    rs73904661    T    G    254.66    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.591;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.3367;MQ=47.08;MQ0=4;MQRankSum=-6.623;QD=3.54;ReadPosRankSum=-1.454;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:43,29:72:99:285,0,1490
20    25733432    .    C    A    146.17    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=5.004;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4527;MQ=48.88;MQ0=2;MQRankSum=-5.572;QD=2.76;ReadPosRankSum=1.127;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:35,18:53:99:176,0,1106
20    25733440    .    T    A    121.89    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.018;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7708;MQ=49.06;MQ0=2;MQRankSum=-4.914;QD=2.77;ReadPosRankSum=1.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:28,15:44:99:152,0,1024
20    25733466    .    A    T    100.71    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.8824;MQ=47.78;MQ0=1;MQRankSum=-4.293;QD=3.6;ReadPosRankSum=-0.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP13-401N8.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376445    GT:AD:DP:GQ:PL    0/1:17,11:28:99:131,0,625
20    25754101    rs2721990    T    C    70.09    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7774;MQ=34.14;MQ0=1;MQRankSum=-3.067;QD=4.67;ReadPosRankSum=-2.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:5,10:15:99:100,0,168
20    25754102    rs149139844    G    A    36.66    MQFilter40    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7774;MQ=32.9;MQ0=1;MQRankSum=-1.573;QD=2.16;ReadPosRankSum=0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:11,6:17:66.65:67,0,200
20    25754132    rs78557488    T    A    163.07    HaplotypeScoreFilter13;MQFilter40    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.209;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=24.416;MQ=36.79;MQ0=1;MQRankSum=-4.192;QD=5.62;ReadPosRankSum=0.797;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:9,19:29:99:193,0,306
20    25754140    rs79219083    C    T    108.66    HaplotypeScoreFilter13;MQFilter40    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=0.155;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=27.0279;MQ=34.83;MQ0=2;MQRankSum=-2.59;QD=3.2;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:19,13:34:99:139,0,419
20    25754150    rs74912926    G    A    207.18    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.995;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.3621;MQ=35.64;MQ0=2;MQRankSum=-2.845;QD=4.82;ReadPosRankSum=-0.192;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:24,18:43:99:237,0,453
20    25754155    rs111512337    G    A    76.62    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=2.523;DB;DP=51;Dels=0.0;FS=2.518;HRun=1;HaplotypeScore=14.2398;MQ=35.62;MQ0=2;MQRankSum=-2.337;QD=1.5;ReadPosRankSum=-0.128;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:38,13:51:99:107,0,820
20    25754160    rs75529219    A    G    252.20    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=27.9876;MQ=35.01;MQ0=3;MQRankSum=-2.889;QD=4.67;ReadPosRankSum=0.118;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:30,24:54:99:282,0,751
20    25754168    rs111271970    T    C    221.18    HaplotypeScoreFilter13;MQFilter40    AB=0.683;AC=1;AF=0.50;AN=2;BaseQRankSum=1.863;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=37.1294;MQ=33.36;MQ0=4;MQRankSum=-2.069;QD=3.46;ReadPosRankSum=-2.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:43,20:64:99:251,0,848
20    25754173    rs7363101    G    A    252.45    MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.855;DB;DP=68;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.6524;MQ=33.36;MQ0=4;MQRankSum=-2.031;QD=3.71;ReadPosRankSum=-2.245;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:48,20:68:99:282,0,997
20    25754206    rs62213503    A    T    1027.87    HaplotypeScoreFilter13;MQFilter40    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=2.978;DB;DP=81;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=20.3026;MQ=34.38;MQ0=4;MQRankSum=-5.714;QD=12.54;ReadPosRankSum=1.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:26,55:81:99:1058,0,708
20    25754210    .    A    C    281.08    HaplotypeScoreFilter13;MQFilter40    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=1.374;DP=83;Dels=0.0;FS=2.778;HRun=0;HaplotypeScore=20.3026;MQ=35.48;MQ0=3;MQRankSum=-2.882;QD=3.39;ReadPosRankSum=1.051;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:59,24:83:99:311,0,1479
20    25754225    rs62213504    C    T    1339.69    MQFilter40    AB=0.213;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.144;DB;DP=89;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.45;MQ0=4;MQRankSum=-5.945;QD=15.05;ReadPosRankSum=0.716;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:19,70:89:99:1370,0,470
20    25754253    .    G    A    176.41    HaplotypeScoreFilter13;MQFilter40    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=0.76;DP=86;Dels=0.0;FS=3.06;HRun=1;HaplotypeScore=19.5586;MQ=33.71;MQ0=3;MQRankSum=-0.906;QD=2.05;ReadPosRankSum=1.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:72,14:86:99:206,0,1648
20    25754256    rs79046098    G    A    473.01    HaplotypeScoreFilter13;MQFilter40    AB=0.638;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.954;DB;DP=80;Dels=0.0;FS=1.119;HRun=0;HaplotypeScore=19.5586;MQ=33.9;MQ0=2;MQRankSum=-3.153;QD=5.91;ReadPosRankSum=-0.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:51,29:80:99:503,0,1230
20    25754269    rs73347168    A    G    544.34    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=74;Dels=0.0;FS=2.451;HRun=0;HaplotypeScore=2.9524;MQ=34.26;MQ0=1;MQRankSum=-0.671;QD=7.36;ReadPosRankSum=3.534;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:44,30:74:99:574,0,1054
20    25754287    rs112771311    C    T    488.85    MQFilter40    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=3.115;DB;DP=57;Dels=0.0;FS=8.181;HRun=1;HaplotypeScore=12.7601;MQ=32.85;MQ0=1;MQRankSum=0.313;QD=8.58;ReadPosRankSum=2.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:31,26:57:99:519,0,714
20    25754295    rs77627492    T    A    764.78    HaplotypeScoreFilter13;MQFilter40    AB=0.245;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.705;DB;DP=53;Dels=0.0;FS=4.107;HRun=1;HaplotypeScore=13.7335;MQ=33.07;MQ0=1;MQRankSum=-3.888;QD=14.43;ReadPosRankSum=1.374;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:13,40:53:99:795,0,339
20    25754306    .    A    C    146.53    HaplotypeScoreFilter13;MQFilter40    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DP=51;Dels=0.0;FS=5.191;HRun=0;HaplotypeScore=17.628;MQ=31.19;MQ0=1;MQRankSum=-2.319;QD=2.87;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:35,16:51:99:177,0,881
20    25754316    rs77097669    C    T    651.69    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.688;DB;DP=40;Dels=0.0;FS=2.58;HRun=0;HaplotypeScore=9.9081;MQ=29.55;MQ0=0;MQRankSum=-3.094;QD=16.29;ReadPosRankSum=-2.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:8,32:40:99:682,0,198
20    25754335    .    C    T    178.70    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.8281;MQ=29.09;MQ0=0;MQRankSum=0.334;QD=6.62;ReadPosRankSum=1.672;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:18,9:27:99:209,0,412
20    25754343    .    T    G    384.41    MQFilter40    AB=0.269;AC=1;AF=0.50;AN=2;BaseQRankSum=2.544;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.8281;MQ=29.3;MQ0=0;MQRankSum=-3.006;QD=14.79;ReadPosRankSum=-0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:7,19:26:99:414,0,183
20    25754384    .    G    A    82.01    MQFilter40    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.998;MQ=27.16;MQ0=0;MQRankSum=-0.751;QD=9.11;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:1,8:9:24.28:112,0,24
20    25754404    rs2466354    C    A    97.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.7;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:130,12,0
20    25754408    .    G    A    97.43    MQFilter40    AC=2;AF=1.00;AN=2;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=26.7;MQ0=0;QD=16.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    1/1:0,6:6:12.03:130,12,0
20    25755475    rs144889453    T    C    48.89    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=49.6;MQ0=0;MQRankSum=-1.849;QD=4.07;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376404    GT:AD:DP:GQ:PL    0/1:9,3:12:78.88:79,0,231
20    25755526    rs112684378    C    T    46.54    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=47.55;MQ0=0;MQRankSum=-2.475;QD=3.1;ReadPosRankSum=0.919;SNPEFF_AMINO_ACID_CHANGE=G144R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_25754654_25755948;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:11,4:15:76.53:77,0,280
20    25756061    rs62213505    C    T    52.80    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=51.3;MQ0=0;MQRankSum=-1.92;QD=6.6;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:5,3:8:82.80:83,0,184
20    25756084    rs62213506    C    T    55.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.05;MQ0=0;MQRankSum=-1.537;QD=9.3;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:3,3:6:85.79:86,0,99
20    25829098    rs73348909    A    G    51.57    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.73;MQ0=1;MQRankSum=-1.754;QD=6.45;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:3,5:8:81.57:82,0,100
20    25829126    rs73904681    G    A    284.23    PASS    AB=0.304;AC=1;AF=0.50;AN=2;BaseQRankSum=2.598;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=41.9;MQ0=2;MQRankSum=-3.505;QD=12.36;ReadPosRankSum=0.949;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:7,16:23:99:314,0,139
20    25829152    rs72490858    A    G    316.77    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.733;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9536;MQ=44.02;MQ0=3;MQRankSum=-4.458;QD=7.54;ReadPosRankSum=2.938;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:18,24:42:99:347,0,581
20    25829168    rs72490859    T    C    398.10    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=3.116;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6718;MQ=44.32;MQ0=3;MQRankSum=-5.655;QD=7.66;ReadPosRankSum=1.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:23,28:52:99:428,0,790
20    25829184    rs74788234    A    G    576.39    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.488;DB;DP=72;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=44.47;MQ0=4;MQRankSum=-6.506;QD=8.01;ReadPosRankSum=-0.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:32,40:72:99:606,0,1049
20    25829290    rs75735480    G    T    1869.83    HaplotypeScoreFilter13;MQFilter40    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=1.115;DB;DP=244;DS;Dels=0.0;FS=8.405;HRun=0;HaplotypeScore=53.9536;MQ=38.85;MQ0=32;MQRankSum=-11.694;QD=7.66;ReadPosRankSum=2.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:92,152:244:99:1900,0,2762
20    25829292    rs76588078    C    T    598.60    HaplotypeScoreFilter13;MQFilter40    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.363;DB;DP=246;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=53.0377;MQ=39.11;MQ0=31;MQRankSum=-5.037;QD=2.43;ReadPosRankSum=2.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:185,59:246:99:629,0,4105
20    25829312    rs78355493    G    T    243.56    HaplotypeScoreFilter13;QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.428;DB;DP=235;DS;Dels=0.0;FS=3.144;HRun=0;HaplotypeScore=40.2972;MQ=42.11;MQ0=23;MQRankSum=-5.684;QD=1.04;ReadPosRankSum=1.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:187,48:235:99:274,0,4524
20    25829319    rs76467023    A    G    1161.14    HaplotypeScoreFilter13    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.083;DB;DP=235;DS;Dels=0.0;FS=8.532;HRun=0;HaplotypeScore=69.6361;MQ=41.36;MQ0=27;MQRankSum=-11.977;QD=4.92;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:107,128:235:99:1191,0,3396
20    25829342    rs75063166    T    C    1132.72    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.296;DB;DP=224;DS;Dels=0.0;FS=10.17;HRun=2;HaplotypeScore=11.569;MQ=41.46;MQ0=21;MQRankSum=-11.563;QD=5.06;ReadPosRankSum=-5.962;SNPEFF_AMINO_ACID_CHANGE=Q2;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_25829341_25829584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:103,120:224:99:1163,0,3342
20    25829352    rs74961672    T    C    337.80    QDFilter2    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.538;DB;DP=204;DS;Dels=0.0;FS=2.145;HRun=0;HaplotypeScore=1.5449;MQ=41.2;MQ0=27;MQRankSum=-10.673;QD=1.66;ReadPosRankSum=-2.162;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478164    GT:AD:DP:GQ:PL    0/1:103,100:204:99:368,0,3346
20    25829384    rs75757905    T    C    956.35    MQFilter40    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.901;DB;DP=211;DS;Dels=0.0;FS=5.467;HRun=0;HaplotypeScore=2.3972;MQ=38.73;MQ0=22;MQRankSum=-10.293;QD=4.53;ReadPosRankSum=1.256;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478164    GT:AD:DP:GQ:PL    0/1:93,118:211:99:986,0,2954
20    25829386    rs74835374    A    G    1037.56    MQFilter40    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=209;DS;Dels=0.0;FS=5.363;HRun=2;HaplotypeScore=2.3972;MQ=38.39;MQ0=22;MQRankSum=-10.212;QD=4.96;ReadPosRankSum=1.317;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478164    GT:AD:DP:GQ:PL    0/1:90,118:209:99:1068,0,2844
20    25829435    rs79037868    C    T    471.28    HaplotypeScoreFilter13;MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.446;DB;DP=159;Dels=0.0;FS=9.113;HRun=2;HaplotypeScore=43.171;MQ=35.6;MQ0=12;MQRankSum=-4.162;QD=2.96;ReadPosRankSum=1.416;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_25829341_25829584;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:106,53:159:99:501,0,2619
20    25829436    rs73348912    T    C    644.13    HaplotypeScoreFilter13;MQFilter40    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.188;DB;DP=158;Dels=0.0;FS=3.375;HRun=1;HaplotypeScore=42.1843;MQ=35.68;MQ0=12;MQRankSum=-3.499;QD=4.08;ReadPosRankSum=-0.353;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478164    GT:AD:DP:GQ:PL    0/1:104,54:158:99:674,0,2536
20    25829470    rs75119730    A    T    405.61    MQFilter40    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.122;DB;DP=100;Dels=0.0;FS=1.434;HRun=0;HaplotypeScore=0.0;MQ=38.93;MQ0=4;MQRankSum=-3.374;QD=4.06;ReadPosRankSum=0.618;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_25829341_25829584;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376403    GT:AD:DP:GQ:PL    0/1:67,33:100:99:436,0,1714
20    25829502    rs62214070    A    G    571.02    MQFilter40    AB=0.311;AC=1;AF=0.50;AN=2;BaseQRankSum=0.069;DB;DP=62;Dels=0.0;FS=4.56;HRun=2;HaplotypeScore=2.6984;MQ=38.6;MQ0=4;MQRankSum=-5.884;QD=9.21;ReadPosRankSum=2.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM182B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478164    GT:AD:DP:GQ:PL    0/1:19,42:62:99:601,0,609
20    25899933    rs80269787    G    T    34.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CFTRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456646    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
20    25900128    rs79754881    A    T    116    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.942;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9992;MQ=40.72;MQ0=1;MQRankSum=-1.226;QD=3.63;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CFTRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456646    GT:AD:DP:GQ:PL    0/1:24,8:32:99:146,0,637
20    25900135    rs11699441    C    A    291    MQFilter40    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9657;MQ=39.79;MQ0=1;MQRankSum=-1.179;QD=8.31;ReadPosRankSum=-0.917;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CFTRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456646    GT:AD:DP:GQ:PL    0/1:22,13:35:99:321,0,528
20    25900162    rs6037279    C    A    395.99    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=0.698;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=9.5652;MQ=36.14;MQ0=2;MQRankSum=0.503;QD=9.43;ReadPosRankSum=1.564;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CFTRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456646    GT:AD:DP:GQ:PL    0/1:25,17:42:99:426,0,568
20    25900215    rs189420178    T    C    31.95    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.477;DB;DP=30;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.9578;MQ=28.05;MQ0=2;MQRankSum=0.033;QD=1.06;ReadPosRankSum=-0.098;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CFTRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456646    GT:AD:DP:GQ:PL    0/1:24,6:30:61.94:62,0,539
20    25900276    rs75406844    G    T    33.72    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=2.091;DB;DP=36;Dels=0.0;FS=2.634;HRun=2;HaplotypeScore=42.556;MQ=37.21;MQ0=2;MQRankSum=-1.556;QD=0.94;ReadPosRankSum=-0.34;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CFTRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456646    GT:AD:DP:GQ:PL    0/1:29,7:36:63.72:64,0,685
20    25900281    .    TGTTTG    T    158.53    PASS    AB=0.85;AC=1;AF=0.50;AN=2;BaseQRankSum=3.383;DP=28;FS=2.83;HRun=0;HaplotypeScore=241.0288;IndelType=D;MQ=37.96;MQ0=2;MQRankSum=-2.863;QD=4.66;ReadPosRankSum=1.106;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CFTRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456646    GT:AD:DP:GQ:PL    0/1:28,6:28:99:198,0,1741
20    25900425    rs113652918    A    G    46.53    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=30.74;MQ0=1;MQRankSum=0.358;QD=7.76;ReadPosRankSum=0.358;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=CFTRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456646    GT:AD:DP:GQ:PL    0/1:3,3:6:31:77,0,31
20    26061830    rs78032466    TG    T    143.65    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=2.836;DB;DP=23;FS=5.647;HRun=2;HaplotypeScore=76.8794;IndelType=D;MQ=46.0;MQ0=2;MQRankSum=-3.256;QD=5.52;ReadPosRankSum=-0.175;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_20_26061800_26062026;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM182A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000246000    GT:AD:DP:GQ:PL    0/1:18,8:23:99:183,0,747
20    26062021    rs79451834    C    T    114.46    QDFilter2    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=1.491;DB;DP=85;Dels=0.0;FS=12.225;HRun=2;HaplotypeScore=5.3018;MQ=41.53;MQ0=3;MQRankSum=-5.76;QD=1.35;ReadPosRankSum=-0.538;SNPEFF_AMINO_ACID_CHANGE=R125W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_26061800_26062026;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM182A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000246000    GT:AD:DP:GQ:PL    0/1:69,16:85:99:144,0,1633
20    26062036    rs77424811    A    G    80.95    QDFilter2    AB=0.785;AC=1;AF=0.50;AN=2;BaseQRankSum=3.891;DB;DP=81;Dels=0.0;FS=9.315;HRun=0;HaplotypeScore=8.1975;MQ=43.08;MQ0=1;MQRankSum=-6.106;QD=1.0;ReadPosRankSum=-0.297;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM182A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471057    GT:AD:DP:GQ:PL    0/1:62,17:81:99:111,0,1761
20    26062047    rs80162470    A    G    56.48    QDFilter2    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=2.712;DB;DP=83;Dels=0.0;FS=9.549;HRun=1;HaplotypeScore=3.8514;MQ=44.3;MQ0=0;MQRankSum=-5.864;QD=0.68;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM182A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471057    GT:AD:DP:GQ:PL    0/1:66,17:83:86.48:86,0,1934
20    26062057    rs74953472    C    G    82.22    QDFilter2    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.611;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8346;MQ=45.33;MQ0=0;MQRankSum=-5.469;QD=1.02;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM182A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471057    GT:AD:DP:GQ:PL    0/1:64,17:81:99:112,0,1975
20    26062078    rs73906839    G    C    114.67    QDFilter2    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.887;DB;DP=71;Dels=0.0;FS=3.653;HRun=0;HaplotypeScore=9.0117;MQ=45.56;MQ0=0;MQRankSum=-5.568;QD=1.62;ReadPosRankSum=-0.316;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM182A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246000    GT:AD:DP:GQ:PL    0/1:50,21:71:99:145,0,1730
20    26062097    rs73334917    C    T    193.54    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=64;Dels=0.0;FS=1.779;HRun=1;HaplotypeScore=5.7181;MQ=44.96;MQ0=1;MQRankSum=-3.693;QD=3.02;ReadPosRankSum=2.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM182A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246000    GT:AD:DP:GQ:PL    0/1:49,15:64:99:224,0,1456
20    26062138    rs75187341    G    A    31.30    QDFilter2    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.917;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.4653;MQ=42.41;MQ0=2;MQRankSum=-2.422;QD=0.55;ReadPosRankSum=-0.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM182A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246000    GT:AD:DP:GQ:PL    0/1:50,7:57:61.29:61,0,1174
20    26083909    rs73349861    C    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=45.96;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:70,0,32
20    26083928    rs143843975    A    G    59.67    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.7;MQ0=0;MQRankSum=-0.727;QD=14.92;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:1,3:4:29.22:90,0,29
20    26084066    rs73349864    A    T    74.43    QDFilter2    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.398;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6229;MQ=47.99;MQ0=4;MQRankSum=-6.197;QD=1.2;ReadPosRankSum=-0.987;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486162    GT:AD:DP:GQ:PL    0/1:37,25:62:99:104,0,1406
20    26084094    .    T    C    61.50    QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=0.786;DP=90;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=0.9332;MQ=47.95;MQ0=8;MQRankSum=-2.655;QD=0.68;ReadPosRankSum=0.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486162    GT:AD:DP:GQ:PL    0/1:77,13:90:91.49:91,0,2103
20    26084111    rs75722320    A    G    53.20    QDFilter2    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=3.835;DB;DP=110;Dels=0.0;FS=7.534;HRun=1;HaplotypeScore=0.0;MQ=49.75;MQ0=8;MQRankSum=-7.545;QD=0.48;ReadPosRankSum=3.661;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486162    GT:AD:DP:GQ:PL    0/1:74,36:110:83.19:83,0,2413
20    26084113    rs79634027    G    A    56.22    QDFilter2    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=5.643;DB;DP=111;Dels=0.0;FS=7.525;HRun=2;HaplotypeScore=1.7234;MQ=49.6;MQ0=8;MQRankSum=-7.562;QD=0.51;ReadPosRankSum=3.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486162    GT:AD:DP:GQ:PL    0/1:75,36:111:86.22:86,0,2189
20    26084377    rs73349867    A    C    136.18    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.971;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=41.8;MQ0=7;MQRankSum=-4.909;QD=2.78;ReadPosRankSum=0.569;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:24,25:49:99:166,0,823
20    26084411    rs62211564    C    A    120.85    MQFilter40    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.84;MQ0=8;MQRankSum=-4.093;QD=3.78;ReadPosRankSum=-1.569;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:11,21:32:99:151,0,408
20    26084435    rs62211565    T    C    53.36    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9134;MQ=38.19;MQ0=8;MQRankSum=-2.793;QD=2.54;ReadPosRankSum=1.134;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:7,14:21:83.35:83,0,249
20    26094475    .    AC    A    260.70    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=5.539;DP=84;FS=0.0;HRun=1;HaplotypeScore=361.5931;IndelType=D;MQ=49.24;MQ0=6;MQRankSum=-5.215;QD=2.51;ReadPosRankSum=0.066;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:80,24:84:99:300,0,2858
20    26094483    rs146324498    CAT    C    441.67    PASS    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=5.905;DB;DP=91;FS=1.234;HRun=0;HaplotypeScore=435.0415;IndelType=D;MQ=49.51;MQ0=6;MQRankSum=-4.944;QD=3.94;ReadPosRankSum=-0.533;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:90,22:91:99:481,0,4001
20    26094564    rs79802274    T    G    1605.27    HaplotypeScoreFilter13    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.592;DB;DP=186;Dels=0.0;FS=34.972;HRun=0;HaplotypeScore=18.5001;MQ=46.67;MQ0=9;MQRankSum=-8.107;QD=8.63;ReadPosRankSum=2.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:107,79:186:99:1635,0,2978
20    26094567    rs62211581    T    C    1853.27    HaplotypeScoreFilter13    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.225;DB;DP=188;Dels=0.0;FS=11.57;HRun=0;HaplotypeScore=17.5018;MQ=46.56;MQ0=9;MQRankSum=-10.554;QD=9.86;ReadPosRankSum=3.743;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:88,99:188:99:1883,0,2739
20    26094605    rs150462295    G    A    794.22    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.13;DB;DP=176;Dels=0.0;FS=5.798;HRun=0;HaplotypeScore=3.6036;MQ=46.95;MQ0=8;MQRankSum=-7.61;QD=4.51;ReadPosRankSum=-1.185;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:119,57:176:99:824,0,3494
20    26094609    rs80248029    C    A    571.07    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.833;DB;DP=171;Dels=0.0;FS=0.713;HRun=2;HaplotypeScore=2.604;MQ=47.0;MQ0=8;MQRankSum=-7.507;QD=3.34;ReadPosRankSum=-1.314;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:118,52:171:99:601,0,3496
20    26094638    rs76011113    C    T    371.35    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.66;DB;DP=149;Dels=0.0;FS=11.52;HRun=1;HaplotypeScore=2.4673;MQ=48.65;MQ0=8;MQRankSum=-7.949;QD=2.49;ReadPosRankSum=-2.104;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:109,40:149:99:401,0,3060
20    26094651    rs77014314    T    C    217.47    HaplotypeScoreFilter13;QDFilter2    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.587;DB;DP=144;Dels=0.0;FS=27.268;HRun=0;HaplotypeScore=25.3541;MQ=49.52;MQ0=7;MQRankSum=-7.14;QD=1.51;ReadPosRankSum=-0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:111,31:144:99:247,0,3157
20    26094660    rs75350116    T    C    477.15    HaplotypeScoreFilter13    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.048;DB;DP=134;Dels=0.0;FS=16.682;HRun=0;HaplotypeScore=19.0295;MQ=49.65;MQ0=6;MQRankSum=-8.754;QD=3.56;ReadPosRankSum=0.901;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:93,41:134:99:507,0,2978
20    26094689    rs79312112    A    C    371.69    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=3.149;DB;DP=93;Dels=0.0;FS=12.218;HRun=1;HaplotypeScore=4.4097;MQ=50.91;MQ0=3;MQRankSum=-7.41;QD=4.0;ReadPosRankSum=0.814;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:61,31:93:99:402,0,1898
20    26094769    rs74712947    C    A    367.64    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.7;MQ0=1;MQRankSum=-0.686;QD=9.67;ReadPosRankSum=-0.99;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:21,17:38:99:398,0,635
20    26094796    rs78871039    T    G    158.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.877;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.39;MQ0=0;MQRankSum=-0.102;QD=7.18;ReadPosRankSum=0.171;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C20orf191;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478176    GT:AD:DP:GQ:PL    0/1:14,8:22:99:188,0,428
20    29449321    rs6057437    T    G    78.95    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.71;MQ0=2;MQRankSum=0.358;QD=11.28;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:4,3:7:64.17:109,0,64
20    29449333    rs3954507    T    C    37.42    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.71;MQ0=2;MQRankSum=1.231;QD=5.35;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:4,3:7:67.41:67,0,112
20    29449353    rs73347335    T    C    214.60    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=42.89;MQ0=2;MQRankSum=-1.271;QD=17.88;ReadPosRankSum=-1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:2,10:12:55.01:245,0,55
20    29449417    rs3954506    A    C    278.25    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.718;DB;DP=32;Dels=0.0;FS=10.193;HRun=0;HaplotypeScore=1.5717;MQ=44.87;MQ0=5;MQRankSum=-2.667;QD=8.7;ReadPosRankSum=0.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:16,15:32:99:308,0,387
20    29449453    rs3954505    A    G    232.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.657;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.19;MQ0=5;MQRankSum=-4.207;QD=6.11;ReadPosRankSum=-2.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:19,19:38:99:262,0,582
20    29449502    rs4010663    A    G    591.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=55;Dels=0.0;FS=1.094;HRun=0;HaplotypeScore=9.8711;MQ=45.56;MQ0=3;MQRankSum=-4.121;QD=10.75;ReadPosRankSum=1.491;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:22,33:55:99:621,0,712
20    29449509    rs4010662    G    A    820.25    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.881;DB;DP=56;Dels=0.02;FS=1.114;HRun=1;HaplotypeScore=8.8923;MQ=44.69;MQ0=2;MQRankSum=-3.793;QD=14.39;ReadPosRankSum=1.048;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:20,36:56:99:850,0,599
20    29449529    .    A    AAATT    266.73    PASS    AB=0.932;AC=1;AF=0.50;AN=2;BaseQRankSum=1.565;DP=62;FS=7.817;HRun=0;HaplotypeScore=661.0002;IndelType=I;MQ=42.82;MQ0=4;MQRankSum=-2.476;QD=3.92;ReadPosRankSum=0.357;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:63,5:62:99:306,0,2896
20    29449584    rs4010661    G    A    582.08    MQFilter40    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.675;DB;DP=72;Dels=0.0;FS=7.696;HRun=0;HaplotypeScore=0.0;MQ=37.91;MQ0=9;MQRankSum=-1.89;QD=8.08;ReadPosRankSum=0.539;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:41,31:72:99:612,0,842
20    29449608    rs2890264    A    G    385.38    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.49;DB;DP=63;Dels=0.0;FS=14.262;HRun=0;HaplotypeScore=11.6814;MQ=39.59;MQ0=8;MQRankSum=-2.406;QD=6.12;ReadPosRankSum=-0.867;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:42,21:63:99:415,0,928
20    29449611    rs113063504    G    T    119.06    QDFilter2    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=62;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=11.6814;MQ=40.46;MQ0=7;MQRankSum=-0.717;QD=1.92;ReadPosRankSum=-0.807;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:44,18:62:99:149,0,1249
20    29449623    rs3074737    TTTTGC    T    614.60    PASS    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=3.989;DB;DP=52;FS=25.254;HRun=0;HaplotypeScore=534.3329;IndelType=D;MQ=39.22;MQ0=7;MQRankSum=-3.315;QD=9.91;ReadPosRankSum=0.616;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:51,11:52:99:654,0,2799
20    29449657    .    TAA    T    96.24    QDFilter2    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=4.019;DP=55;FS=10.323;HRun=11;HaplotypeScore=498.5764;IndelType=D;MQ=43.54;MQ0=3;MQRankSum=-4.454;QD=1.58;ReadPosRankSum=0.08;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:48,7:55:99:135,0,1246
20    29449667    rs78533192    A    C    114.21    HaplotypeScoreFilter13;QDFilter2    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.87;DB;DP=59;Dels=0.0;FS=1.701;HRun=0;HaplotypeScore=28.3029;MQ=45.23;MQ0=1;MQRankSum=0.01;QD=1.94;ReadPosRankSum=-0.576;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RP4-610C12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376400    GT:AD:DP:GQ:PL    0/1:47,12:59:99:144,0,857
20    29516267    rs6057528    G    T    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP4-610C12.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380888    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
20    29516369    rs6057529    A    C    74.63    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.66;ReadPosRankSum=-0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP4-610C12.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380888    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,143
20    29516670    rs13042647    C    G    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.32;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP4-610C12.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454331    GT:AD:DP:GQ:PL    0/1:2,2:4:56.35:67,0,56
20    29614075    rs75441698    A    G    37.98    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.88;MQ0=2;MQRankSum=-0.358;QD=5.43;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468180    GT:AD:DP:GQ:PL    0/1:4,3:7:67.97:68,0,71
20    29614098    rs113452290    A    C    37.98    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.33;MQ0=4;MQRankSum=0.198;QD=3.45;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468180    GT:AD:DP:GQ:PL    0/1:5,6:11:67.97:68,0,73
20    29614545    rs6057371    C    A    75.82    MQFilter40;QDFilter2    AB=0.92;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.46;DB;DP=75;Dels=0.0;FS=1.84;HRun=2;HaplotypeScore=0.0;MQ=34.35;MQ0=37;MQRankSum=-1.861;QD=1.01;ReadPosRankSum=-2.662;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468180    GT:AD:DP:GQ:PL    0/1:69,6:75:99:106,0,888
20    29623049    rs4892328    A    C    550.13    HaplotypeScoreFilter13    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.192;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=25.0091;MQ=46.63;MQ0=1;MQRankSum=3.242;QD=9.02;ReadPosRankSum=1.351;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:42,19:61:99:580,0,857
20    29623075    .    C    CAAAG    512.92    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=4.354;DP=67;FS=0.0;HRun=0;HaplotypeScore=487.1414;IndelType=I;MQ=39.45;MQ0=6;MQRankSum=-4.977;QD=4.66;ReadPosRankSum=-1.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:75,31:67:99:552,0,2761
20    29623103    rs10439603    G    A    1203.74    HaplotypeScoreFilter13;MQFilter40    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=250;DS;Dels=0.0;FS=8.069;HRun=3;HaplotypeScore=48.8466;MQ=30.67;MQ0=28;MQRankSum=-6.865;QD=4.81;ReadPosRankSum=-4.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:124,126:250:99:1234,0,2654
20    29623113    rs150951095    CA    C    832.85    PASS    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=0.9;DB;DP=160;DS;FS=6.925;HRun=2;HaplotypeScore=1189.8812;IndelType=D;MQ=31.21;MQ0=30;MQRankSum=-2.229;QD=3.33;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:201,49:160:99:872,0,3813
20    29623115    rs76803871    A    T    367.58    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.47;DB;DP=250;DS;Dels=0.0;FS=3.333;HRun=4;HaplotypeScore=72.2925;MQ=31.8;MQ0=28;MQRankSum=-3.959;QD=1.47;ReadPosRankSum=-1.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:188,62:250:99:398,0,2891
20    29623139    rs80270086    A    G    161.71    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.894;DB;DP=250;DS;Dels=0.0;FS=7.033;HRun=1;HaplotypeScore=15.9637;MQ=31.62;MQ0=36;MQRankSum=-4.578;QD=0.65;ReadPosRankSum=0.873;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:196,54:250:99:192,0,4146
20    29623159    .    A    G    182.41    MQFilter40;QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.269;DP=250;DS;Dels=0.0;FS=2.81;HRun=1;HaplotypeScore=11.935;MQ=29.49;MQ0=31;MQRankSum=-2.549;QD=0.73;ReadPosRankSum=-0.281;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:202,47:250:99:212,0,4091
20    29623223    rs10439604    T    C    1195.57    HaplotypeScoreFilter13;MQFilter40    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=2.049;DB;DP=250;DS;Dels=0.0;FS=3.591;HRun=1;HaplotypeScore=84.1263;MQ=28.45;MQ0=33;MQRankSum=1.511;QD=4.78;ReadPosRankSum=-2.601;SNPEFF_AMINO_ACID_CHANGE=V12A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29623129_29623254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:169,79:250:99:1226,0,2539
20    29623248    rs149713531    AAAG    A    1276.36    PASS    AB=0.751;AC=1;AF=0.50;AN=2;BaseQRankSum=1.337;DB;DP=126;DS;FS=4.789;HRun=0;HaplotypeScore=1093.9682;IndelType=D;MQ=24.78;MQ0=48;MQRankSum=1.933;QD=5.11;ReadPosRankSum=2.54;SNPEFF_AMINO_ACID_CHANGE=KE22K;SNPEFF_CODON_CHANGE=aaagaa/aaa;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_20_29623129_29623254;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:167,83:126:99:1315,0,4422
20    29623251    .    G    GA    150.04    QDFilter2    AB=0.947;AC=1;AF=0.50;AN=2;BaseQRankSum=0.37;DP=125;DS;FS=0.0;HRun=3;HaplotypeScore=1060.7499;IndelType=I;MQ=24.87;MQ0=49;MQRankSum=-3.117;QD=0.6;ReadPosRankSum=-1.471;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_20_29623129_29623254;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:236,14:125:99:189,0,2225
20    29623254    .    G    A    80.96    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=0.303;DP=250;DS;Dels=0.0;FS=2.288;HRun=2;HaplotypeScore=253.9481;MQ=24.59;MQ0=51;MQRankSum=-2.13;QD=0.32;ReadPosRankSum=0.782;SNPEFF_AMINO_ACID_CHANGE=D24N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29623129_29623254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:211,38:250:99:111,0,2061
20    29623334    rs62198336    A    C    347.35    HaplotypeScoreFilter13;MQFilter40    AB=0.227;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.408;DB;DP=142;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.0831;MQ=28.49;MQ0=45;MQRankSum=-7.862;QD=2.45;ReadPosRankSum=-1.861;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:32,109:142:99:377,0,1113
20    29623355    rs73621403    T    A    130.60    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=0.504;DB;DP=93;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=51.6586;MQ=32.24;MQ0=22;MQRankSum=-1.982;QD=1.4;ReadPosRankSum=-2.493;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:61,32:93:99:161,0,1164
20    29623357    rs76784894    T    G    417.91    HaplotypeScoreFilter13;MQFilter40    AB=0.29;AC=1;AF=0.50;AN=2;BaseQRankSum=2.92;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=50.692;MQ=32.44;MQ0=20;MQRankSum=-6.58;QD=4.49;ReadPosRankSum=-0.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:27,66:93:99:448,0,886
20    29623370    rs73621405    T    A    401.78    HaplotypeScoreFilter13;MQFilter40    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.223;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=19.3735;MQ=30.83;MQ0=21;MQRankSum=-0.692;QD=4.19;ReadPosRankSum=0.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:54,42:96:99:432,0,850
20    29625687    rs80264683    C    T    36.97    MQFilter40;QDFilter2    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.345;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.8029;MQ=29.89;MQ0=2;MQRankSum=-0.945;QD=1.42;ReadPosRankSum=1.295;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:17,8:25:66.96:67,0,417
20    29625716    rs73621453    C    T    286.38    HaplotypeScoreFilter13;MQFilter40    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.406;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=26.4511;MQ=27.19;MQ0=3;MQRankSum=0.249;QD=8.42;ReadPosRankSum=-0.871;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:16,18:34:99:316,0,292
20    29625720    rs73621454    A    T    333.98    HaplotypeScoreFilter13;MQFilter40    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.9381;MQ=26.73;MQ0=4;MQRankSum=-0.501;QD=7.95;ReadPosRankSum=-0.927;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:20,22:42:99:364,0,380
20    29625745    rs73621455    A    T    412.74    MQFilter40    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=2.147;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7416;MQ=25.19;MQ0=8;MQRankSum=-1.014;QD=6.35;ReadPosRankSum=-1.477;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:29,36:65:99:443,0,579
20    29625769    rs78251253    C    T    152.04    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=0.258;DB;DP=122;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=17.2978;MQ=35.0;MQ0=12;MQRankSum=-2.395;QD=1.25;ReadPosRankSum=-0.004;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:99,23:122:99:182,0,2428
20    29625788    rs4635596    C    T    1623.61    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=169;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=37.02;MQ0=14;MQRankSum=-4.218;QD=9.61;ReadPosRankSum=1.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:78,91:169:99:1654,0,2076
20    29625838    rs62198353    C    A    4340.56    HaplotypeScoreFilter13    AB=0.233;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.659;DB;DP=250;DS;Dels=0.0;FS=4.473;HRun=0;HaplotypeScore=28.837;MQ=42.04;MQ0=13;MQRankSum=-8.712;QD=17.36;ReadPosRankSum=-0.227;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:58,191:250:99:4341,0,1633
20    29625873    rs78003242    A    C    553.43    HaplotypeScoreFilter13;MQFilter40    AB=0.82;AC=1;AF=0.50;AN=2;BaseQRankSum=4.326;DB;DP=250;DS;Dels=0.0;FS=3.636;HRun=0;HaplotypeScore=78.5231;MQ=39.72;MQ0=12;MQRankSum=-1.514;QD=2.21;ReadPosRankSum=1.428;SNPEFF_AMINO_ACID_CHANGE=R39S;SNPEFF_CODON_CHANGE=agA/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:205,45:250:99:583,0,5295
20    29625876    rs73611718    C    T    2686.16    HaplotypeScoreFilter13;MQFilter40    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.472;DB;DP=250;DS;Dels=0.0;FS=2.514;HRun=1;HaplotypeScore=73.674;MQ=39.58;MQ0=12;MQRankSum=-3.184;QD=10.74;ReadPosRankSum=-0.228;SNPEFF_AMINO_ACID_CHANGE=I40;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:124,126:250:99:2716,0,3032
20    29625895    rs76435412    G    A    498.86    HaplotypeScoreFilter13;MQFilter40    AB=0.811;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.84;DB;DP=250;DS;Dels=0.0;FS=17.198;HRun=0;HaplotypeScore=39.1386;MQ=37.91;MQ0=7;MQRankSum=-2.722;QD=2.0;ReadPosRankSum=-0.927;SNPEFF_AMINO_ACID_CHANGE=G47R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:202,47:250:99:529,0,5004
20    29625924    .    A    ACTT    3332.05    PASS    AB=0.903;AC=1;AF=0.50;AN=2;BaseQRankSum=9.48;DP=180;DS;FS=37.683;HRun=0;HaplotypeScore=2297.5294;IndelType=I;MQ=36.52;MQ0=15;MQRankSum=-9.036;QD=13.33;ReadPosRankSum=2.872;SNPEFF_AMINO_ACID_CHANGE=-57L;SNPEFF_CODON_CHANGE=-/CTT;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:223,26:180:99:3332,0,2684
20    29625925    rs112430454    C    CTTG    4504.53    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=9.609;DB;DP=177;DS;FS=35.939;HRun=0;HaplotypeScore=2089.1135;IndelType=I;MQ=35.92;MQ0=16;MQRankSum=-10.091;QD=18.02;ReadPosRankSum=1.826;SNPEFF_AMINO_ACID_CHANGE=L57LV;SNPEFF_CODON_CHANGE=ctt/cTTGtt;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:149,101:177:99:4505,0,2102
20    29625935    rs62198354    A    G    2642.65    HaplotypeScoreFilter13;MQFilter40    AB=0.26;AC=1;AF=0.50;AN=2;BaseQRankSum=-8.066;DB;DP=250;DS;Dels=0.0;FS=25.873;HRun=0;HaplotypeScore=128.3419;MQ=35.91;MQ0=16;MQRankSum=-10.477;QD=10.57;ReadPosRankSum=-2.18;SNPEFF_AMINO_ACID_CHANGE=H60R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:65,185:250:99:2673,0,1997
20    29625946    rs80340867    A    G    198.84    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=29.1781;MQ=39.58;MQ0=14;MQRankSum=-3.166;QD=0.8;ReadPosRankSum=-1.641;SNPEFF_AMINO_ACID_CHANGE=I64V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:212,38:250:99:229,0,5463
20    29625950    rs78096528    G    A    83.33    HaplotypeScoreFilter13;QDFilter2    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.069;DB;DP=250;DS;Dels=0.0;FS=12.056;HRun=1;HaplotypeScore=25.0757;MQ=40.78;MQ0=13;MQRankSum=-2.363;QD=0.33;ReadPosRankSum=-3.356;SNPEFF_AMINO_ACID_CHANGE=G65E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:209,41:250:99:113,0,5545
20    29625965    rs79873624    G    A    759.21    HaplotypeScoreFilter13    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.508;DB;DP=250;DS;Dels=0.0;FS=9.483;HRun=0;HaplotypeScore=33.5933;MQ=42.17;MQ0=10;MQRankSum=-2.75;QD=3.04;ReadPosRankSum=-2.969;SNPEFF_AMINO_ACID_CHANGE=W70*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_20_29625873_29625984;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:200,50:250:99:789,0,5425
20    29625985    rs79368216    G    A    641.25    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.496;DB;DP=250;DS;Dels=0.0;FS=11.107;HRun=0;HaplotypeScore=6.4719;MQ=40.92;MQ0=14;MQRankSum=-2.025;QD=2.57;ReadPosRankSum=-0.999;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:204,46:250:99:671,0,5332
20    29625997    rs62198355    A    T    3098.58    HaplotypeScoreFilter13    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=4.175;DB;DP=250;DS;Dels=0.0;FS=3.679;HRun=2;HaplotypeScore=16.129;MQ=41.64;MQ0=14;MQRankSum=-2.971;QD=12.39;ReadPosRankSum=0.813;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:100,150:250:99:3129,0,2826
20    29626027    rs2137756    C    T    3228.29    HaplotypeScoreFilter13    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.965;DB;DP=250;DS;Dels=0.0;FS=2.104;HRun=0;HaplotypeScore=19.2429;MQ=41.33;MQ0=9;MQRankSum=-0.841;QD=12.91;ReadPosRankSum=-0.975;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:103,147:250:99:3258,0,2781
20    29626083    rs73620390    TA    T    1090.37    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=4.87;DB;DP=155;DS;FS=0.0;HRun=2;HaplotypeScore=1422.8555;IndelType=D;MQ=42.01;MQ0=6;MQRankSum=-0.547;QD=5.45;ReadPosRankSum=0.794;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:152,48:155:99:1129,0,5011
20    29626112    rs73621458    A    G    1552.64    HaplotypeScoreFilter13    AB=0.626;AC=1;AF=0.50;AN=2;BaseQRankSum=5.47;DB;DP=182;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=29.8741;MQ=41.89;MQ0=8;MQRankSum=0.367;QD=8.53;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:114,68:182:99:1583,0,2662
20    29626127    rs73621459    C    G    1584.24    HaplotypeScoreFilter13    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=2.195;DB;DP=157;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=14.7254;MQ=41.12;MQ0=8;MQRankSum=0.679;QD=10.09;ReadPosRankSum=0.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:87,70:157:99:1614,0,1948
20    29626147    rs62199564    A    G    1852.13    HaplotypeScoreFilter13;MQFilter40    AB=0.212;AC=1;AF=0.50;AN=2;BaseQRankSum=1.27;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.6086;MQ=38.37;MQ0=6;MQRankSum=-0.747;QD=16.39;ReadPosRankSum=-0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:24,89:113:99:1882,0,498
20    29626174    rs67009035    T    A    137.06    MQFilter40    AB=0.745;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.311;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9738;MQ=33.5;MQ0=4;MQRankSum=0.602;QD=2.49;ReadPosRankSum=0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:41,14:55:99:167,0,873
20    29626179    rs62199565    T    C    739.46    MQFilter40    AB=0.071;AC=1;AF=0.50;AN=2;BaseQRankSum=0.108;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.9888;MQ=30.62;MQ0=4;MQRankSum=-2.598;QD=17.61;ReadPosRankSum=0.812;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:3,39:42:35.12:769,0,35
20    29626194    rs73621460    G    C    305.89    MQFilter40    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.199;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9981;MQ=29.36;MQ0=2;MQRankSum=-1.085;QD=9.87;ReadPosRankSum=0.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:13,18:31:99:336,0,194
20    29626220    rs67057327    T    A    51.04    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.561;MQ=30.19;MQ0=0;MQRankSum=0.919;QD=3.65;ReadPosRankSum=-1.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:10,4:14:81.03:81,0,174
20    29626296    rs66845603    T    G    39.42    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=47.02;MQ0=0;MQRankSum=-0.727;QD=9.86;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:1,3:4:32.73:69,0,33
20    29627992    rs111895207    A    ATCCTACTTTAG    1274.48    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=1.164;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=202.7011;IndelType=I;MQ=37.06;MQ0=2;MQRankSum=-2.511;QD=57.93;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:14,7:16:99:1314,0,349
20    29628012    rs73621497    T    C    182.80    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=1.383;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=8.779;MQ=34.47;MQ0=7;MQRankSum=-0.051;QD=4.15;ReadPosRankSum=-0.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:29,15:44:99:213,0,479
20    29628099    rs73621498    G    C    852.08    MQFilter40    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=3.123;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8517;MQ=31.87;MQ0=12;MQRankSum=-6.936;QD=9.26;ReadPosRankSum=0.011;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:24,68:92:99:882,0,699
20    29628112    rs73621499    C    A    762.14    MQFilter40    AB=0.315;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.772;DB;DP=92;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9411;MQ=33.49;MQ0=10;MQRankSum=-7.458;QD=8.28;ReadPosRankSum=1.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:29,63:92:99:792,0,960
20    29628128    rs73621500    C    T    1022.99    HaplotypeScoreFilter13;MQFilter40    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=0.455;DB;DP=131;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=53.101;MQ=35.31;MQ0=16;MQRankSum=-8.839;QD=7.81;ReadPosRankSum=1.181;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:41,90:131:99:1053,0,1356
20    29628136    rs73621501    T    G    971.43    HaplotypeScoreFilter13;MQFilter40    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=150;Dels=0.0;FS=3.917;HRun=0;HaplotypeScore=37.2465;MQ=35.88;MQ0=18;MQRankSum=-5.525;QD=6.48;ReadPosRankSum=-0.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:79,71:150:99:1001,0,2006
20    29628158    rs73605203    G    A    2547.38    HaplotypeScoreFilter13;MQFilter40    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=2.574;DB;DP=241;Dels=0.0;FS=9.919;HRun=1;HaplotypeScore=65.0473;MQ=36.36;MQ0=26;MQRankSum=-4.514;QD=10.57;ReadPosRankSum=-2.598;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:103,138:241:99:2577,0,2402
20    29628164    rs62199575    G    A    3748.87    HaplotypeScoreFilter13;MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DB;DP=250;DS;Dels=0.0;FS=7.044;HRun=2;HaplotypeScore=64.0921;MQ=36.57;MQ0=25;MQRankSum=-7.996;QD=15.0;ReadPosRankSum=-3.095;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482423    GT:AD:DP:GQ:PL    0/1:50,200:250:99:3749,0,1333
20    29628237    rs142752776    C    A    251.45    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.832;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.882;DB;DP=250;DS;Dels=0.0;FS=0.764;HRun=0;HaplotypeScore=28.218;MQ=33.58;MQ0=23;MQRankSum=-2.082;QD=1.01;ReadPosRankSum=2.101;SNPEFF_AMINO_ACID_CHANGE=A80D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29628227_29628331;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:208,42:250:99:281,0,5278
20    29628271    rs62199576    C    T    2963.86    MQFilter40    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.813;DB;DP=249;DS;Dels=0.0;FS=7.826;HRun=0;HaplotypeScore=11.6706;MQ=32.67;MQ0=25;MQRankSum=-1.827;QD=11.9;ReadPosRankSum=-0.281;SNPEFF_AMINO_ACID_CHANGE=C91;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29628227_29628331;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:105,144:249:99:2994,0,2202
20    29628328    .    C    G    117.17    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=2.561;DP=211;DS;Dels=0.0;FS=11.469;HRun=0;HaplotypeScore=55.8685;MQ=31.06;MQ0=25;MQRankSum=-2.758;QD=0.56;ReadPosRankSum=-1.425;SNPEFF_AMINO_ACID_CHANGE=I110M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29628227_29628331;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:178,33:211:99:147,0,3314
20    29628335    rs11152455    A    T    630.41    HaplotypeScoreFilter13;MQFilter40    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=2.993;DB;DP=201;DS;Dels=0.0;FS=1.11;HRun=1;HaplotypeScore=97.9085;MQ=31.49;MQ0=23;MQRankSum=-5.471;QD=3.14;ReadPosRankSum=-0.908;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:116,84:201:99:660,0,2444
20    29628341    rs11152456    C    A    1207.46    HaplotypeScoreFilter13;MQFilter40    AB=0.255;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.136;DB;DP=188;DS;Dels=0.0;FS=2.512;HRun=0;HaplotypeScore=69.9114;MQ=32.22;MQ0=21;MQRankSum=-10.013;QD=6.42;ReadPosRankSum=-2.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:48,140:188:99:1237,0,1575
20    29628361    rs11152457    A    C    916.69    MQFilter40    AB=0.262;AC=1;AF=0.50;AN=2;BaseQRankSum=2.682;DB;DP=195;DS;Dels=0.0;FS=2.751;HRun=0;HaplotypeScore=9.19;MQ=31.98;MQ0=29;MQRankSum=-10.252;QD=4.7;ReadPosRankSum=0.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:51,144:195:99:947,0,1753
20    29628431    rs11152458    C    T    1299.87    MQFilter40    AB=0.16;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.176;DB;DP=106;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=10.6442;MQ=32.47;MQ0=15;MQRankSum=-5.534;QD=12.26;ReadPosRankSum=2.327;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:17,89:106:99:1330,0,484
20    29628477    rs62199577    T    A    337.19    MQFilter40    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=1.045;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.7282;MQ=36.95;MQ0=8;MQRankSum=-2.356;QD=5.62;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:37,23:60:99:367,0,966
20    29628488    rs11152459    C    T    321.50    HaplotypeScoreFilter13;MQFilter40    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=0.097;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=18.5635;MQ=36.17;MQ0=9;MQRankSum=0.465;QD=5.36;ReadPosRankSum=0.162;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:43,17:60:99:351,0,1012
20    29628498    rs62199578    A    C    125.40    HaplotypeScoreFilter13;MQFilter40    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=13.7617;MQ=36.46;MQ0=9;MQRankSum=-0.37;QD=2.2;ReadPosRankSum=1.506;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:48,9:57:99:155,0,1160
20    29632437    rs76219612    T    C    49.27    MQFilter40    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.612;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6655;MQ=26.6;MQ0=0;MQRankSum=-1.347;QD=2.59;ReadPosRankSum=0.939;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:9,10:19:79.26:79,0,116
20    29632471    rs74734992    A    T    165.90    MQFilter40    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=3.43;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7331;MQ=27.68;MQ0=0;MQRankSum=-1.308;QD=5.92;ReadPosRankSum=-0.419;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:11,17:28:99:196,0,213
20    29632473    rs77990465    G    T    165.90    MQFilter40    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.147;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7331;MQ=27.68;MQ0=0;MQRankSum=0.122;QD=5.93;ReadPosRankSum=-1.195;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:15,13:28:99:196,0,204
20    29632486    rs74693630    C    T    52.03    MQFilter40;QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.167;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7213;MQ=36.01;MQ0=0;MQRankSum=-2.846;QD=1.58;ReadPosRankSum=0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:16,16:33:82.03:82,0,414
20    29632487    rs28581953    A    G    154.42    MQFilter40    AB=0.324;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.031;DB;DP=34;Dels=0.0;FS=3.757;HRun=0;HaplotypeScore=8.7213;MQ=36.94;MQ0=0;MQRankSum=-4.638;QD=4.54;ReadPosRankSum=2.577;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:11,23:34:99:184,0,377
20    29632499    rs28523287    G    A    286.09    HaplotypeScoreFilter13;MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=4.029;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=22.7849;MQ=37.26;MQ0=1;MQRankSum=-5.925;QD=5.3;ReadPosRankSum=0.404;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:18,36:54:99:316,0,614
20    29632506    .    T    C    179.42    HaplotypeScoreFilter13;MQFilter40    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=1.724;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=22.7849;MQ=38.67;MQ0=1;MQRankSum=-3.637;QD=2.8;ReadPosRankSum=0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:37,27:64:99:209,0,987
20    29632519    rs76216438    GA    G    892.72    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=6.836;DB;DP=65;FS=0.0;HRun=6;HaplotypeScore=689.9709;IndelType=D;MQ=40.26;MQ0=1;MQRankSum=-6.626;QD=10.76;ReadPosRankSum=-1.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:33,50:65:99:932,0,974
20    29632543    rs9647042    T    C    1360.83    MQFilter40    AB=0.546;AC=1;AF=0.50;AN=2;BaseQRankSum=1.809;DB;DP=229;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.5124;MQ=33.07;MQ0=26;MQRankSum=-5.784;QD=5.94;ReadPosRankSum=-1.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:125,104:229:99:1391,0,2882
20    29632564    rs2379677    G    A    3575.85    HaplotypeScoreFilter13;MQFilter40    AB=0.144;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.789;DB;DP=250;DS;Dels=0.0;FS=2.973;HRun=0;HaplotypeScore=18.2056;MQ=33.19;MQ0=26;MQRankSum=-8.964;QD=14.3;ReadPosRankSum=-0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:36,214:250:99:3576,0,831
20    29632593    rs112146379    A    G    574.49    PASS    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=250;DS;Dels=0.0;FS=2.295;HRun=1;HaplotypeScore=7.5037;MQ=40.81;MQ0=23;MQRankSum=-2.471;QD=2.3;ReadPosRankSum=-0.646;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:206,39:250:99:604,0,5112
20    29632638    rs9647043    C    A    2059.10    HaplotypeScoreFilter13    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=4.66;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=44.5619;MQ=43.15;MQ0=17;MQRankSum=2.958;QD=8.24;ReadPosRankSum=-0.805;SNPEFF_AMINO_ACID_CHANGE=H151Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29632611_29632721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:160,90:250:99:2089,0,4063
20    29632643    rs143379667    T    C    277.47    HaplotypeScoreFilter13;QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.677;DB;DP=249;DS;Dels=0.0;FS=3.849;HRun=1;HaplotypeScore=51.3493;MQ=44.66;MQ0=14;MQRankSum=-1.305;QD=1.11;ReadPosRankSum=0.035;SNPEFF_AMINO_ACID_CHANGE=L153P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29632611_29632721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:217,32:249:99:307,0,6523
20    29632662    rs1803594    G    C    308.57    HaplotypeScoreFilter13;QDFilter2    AB=0.751;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.552;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=43.4448;MQ=46.3;MQ0=12;MQRankSum=-8.149;QD=1.23;ReadPosRankSum=-1.336;SNPEFF_AMINO_ACID_CHANGE=E159D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_29632611_29632721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:157,52:250:99:339,0,5235
20    29632674    rs57432223    T    TA    2551.50    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.407;DB;DP=223;DS;FS=8.194;HRun=5;HaplotypeScore=1415.5882;IndelType=I;MQ=45.52;MQ0=10;MQRankSum=-1.528;QD=10.21;ReadPosRankSum=-1.819;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_20_29632611_29632721;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:190,60:223:99:2591,0,2710
20    29632726    rs138922778    CTATT    C    429.06    QDFilter2    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=5.559;DB;DP=216;DS;FS=23.362;HRun=0;HaplotypeScore=2023.4286;IndelType=D;MQ=42.5;MQ0=11;MQRankSum=-3.187;QD=1.72;ReadPosRankSum=0.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:225,25:216:99:468,0,13872
20    29632761    rs6057390    T    C    5180.59    PASS    AB=0.146;AC=1;AF=0.50;AN=2;BaseQRankSum=2.86;DB;DP=247;DS;Dels=0.0;FS=2.114;HRun=1;HaplotypeScore=5.6171;MQ=43.01;MQ0=8;MQRankSum=-6.975;QD=20.89;ReadPosRankSum=-2.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:36,211:247:99:5181,0,839
20    29632772    rs113430333    G    A    223.80    HaplotypeScoreFilter13;QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.597;DB;DP=248;DS;Dels=0.0;FS=6.697;HRun=0;HaplotypeScore=21.5265;MQ=43.61;MQ0=9;MQRankSum=-0.343;QD=0.9;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:222,26:248:99:254,0,6137
20    29632827    rs75935841    T    C    383.38    HaplotypeScoreFilter13;QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.825;DB;DP=234;DS;Dels=0.0;FS=8.321;HRun=0;HaplotypeScore=66.2271;MQ=44.58;MQ0=15;MQRankSum=-5.04;QD=1.64;ReadPosRankSum=1.822;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:195,39:234:99:413,0,5877
20    29632832    rs12162451    A    C    3988.03    HaplotypeScoreFilter13    AB=0.293;AC=1;AF=0.50;AN=2;BaseQRankSum=0.121;DB;DP=232;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=59.2989;MQ=44.11;MQ0=16;MQRankSum=-4.131;QD=17.19;ReadPosRankSum=-0.039;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:68,164:232:99:3988,0,1806
20    29632896    rs62196367    G    C    167.50    MQFilter40;QDFilter2    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.884;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.6548;MQ=39.35;MQ0=8;MQRankSum=-3.939;QD=1.8;ReadPosRankSum=0.492;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:71,22:93:99:197,0,1985
20    29632925    rs6057188    A    C    542.19    MQFilter40    AB=0.206;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.543;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.5894;MQ=38.53;MQ0=3;MQRankSum=-3.992;QD=15.95;ReadPosRankSum=0.543;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:7,27:34:99:572,0,207
20    29632936    rs10451734    C    T    91.21    MQFilter40    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=3.5999;MQ=36.97;MQ0=2;MQRankSum=-1.444;QD=3.97;ReadPosRankSum=1.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439954    GT:AD:DP:GQ:PL    0/1:12,11:23:99:121,0,293
20    29633794    rs10084493    C    A    192.08    MQFilter40    AB=0.281;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.3337;MQ=39.68;MQ0=2;MQRankSum=-3.983;QD=6.0;ReadPosRankSum=-1.222;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:9,23:32:99:222,0,298
20    29633816    .    G    A    38.21    MQFilter40;QDFilter2    AB=0.889;AC=1;AF=0.50;AN=2;BaseQRankSum=1.451;DP=63;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=7.7519;MQ=39.48;MQ0=3;MQRankSum=-0.438;QD=0.61;ReadPosRankSum=-0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:56,7:63:68.20:68,0,1412
20    29633916    rs2554494    G    T    1235.42    HaplotypeScoreFilter13;MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.499;DB;DP=164;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=31.2839;MQ=39.02;MQ0=13;MQRankSum=-2.946;QD=7.53;ReadPosRankSum=1.406;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:60,75:164:99:1265,0,1412
20    29633938    rs61041024    A    G    237.78    HaplotypeScoreFilter13;QDFilter2    AB=0.796;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=148;Dels=0.0;FS=5.114;HRun=2;HaplotypeScore=30.6148;MQ=40.27;MQ0=11;MQRankSum=-3.116;QD=1.61;ReadPosRankSum=-0.561;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:117,30:148:99:268,0,2450
20    29633952    rs62196374    C    T    620.17    MQFilter40    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.849;DB;DP=150;Dels=0.0;FS=8.301;HRun=0;HaplotypeScore=9.837;MQ=38.65;MQ0=14;MQRankSum=-2.474;QD=4.13;ReadPosRankSum=-4.329;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:85,65:150:99:650,0,1768
20    29633966    rs4010960    GTTT    G    866.08    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=5.748;DB;DP=103;FS=22.043;HRun=10;HaplotypeScore=1077.8156;IndelType=D;MQ=38.47;MQ0=9;MQRankSum=-2.723;QD=6.19;ReadPosRankSum=1.252;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:68,48:103:99:905,0,2373
20    29634037    rs4006816    G    A    325.93    MQFilter40    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=0.168;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=7.8501;MQ=36.41;MQ0=4;MQRankSum=-0.786;QD=4.4;ReadPosRankSum=1.189;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:52,22:74:99:356,0,1052
20    29634049    rs2379675    G    C    237.20    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.466;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.9116;MQ=39.43;MQ0=1;MQRankSum=-1.238;QD=4.24;ReadPosRankSum=1.956;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRG1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278882    GT:AD:DP:GQ:PL    0/1:40,16:56:99:267,0,1016
20    29646917    rs6057414    C    T    73.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=24.55;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
20    29647107    rs11480106    A    AG    198.03    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.13;DB;DP=14;FS=6.368;HRun=0;HaplotypeScore=56.1383;IndelType=I;MQ=53.08;MQ0=1;MQRankSum=0.71;QD=12.38;ReadPosRankSum=-0.581;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,6:14:99:237,0,294
20    29651872    rs62206777    T    C    152.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.97;MQ0=3;QD=15.22;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,10:10:18.02:185,18,0
20    29651928    rs77179640    A    C    468.34    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.172;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=19.5318;MQ=31.8;MQ0=2;MQRankSum=-1.604;QD=16.15;ReadPosRankSum=2.218;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,24:29:71.16:498,0,71
20    29651929    rs76905142    T    G    85.38    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.412;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=18.5653;MQ=31.8;MQ0=2;MQRankSum=0.029;QD=2.94;ReadPosRankSum=1.487;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,7:29:99:115,0,451
20    29651938    rs78173963    G    C    44.55    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.306;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=15.6658;MQ=34.31;MQ0=1;MQRankSum=-0.727;QD=1.39;ReadPosRankSum=1.149;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:24,8:32:74.54:75,0,542
20    29651939    rs76157022    G    A    44.54    MQFilter40;QDFilter2;SnpCluster    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=0.633;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=11.6953;MQ=36.33;MQ0=1;MQRankSum=-1.29;QD=1.31;ReadPosRankSum=1.618;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,8:34:74.53:75,0,561
20    29651952    rs62206778    C    A    516.29    MQFilter40    AB=0.237;AC=1;AF=0.50;AN=2;BaseQRankSum=3.558;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.84;MQ0=0;MQRankSum=-2.85;QD=13.59;ReadPosRankSum=0.832;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,29:38:99:546,0,245
20    29651968    rs62206779    T    G    427.88    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=4.384;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.9919;MQ=46.8;MQ0=0;MQRankSum=-1.683;QD=8.39;ReadPosRankSum=0.979;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:29,22:51:99:458,0,835
20    29652000    rs62206780    T    C    244.56    HaplotypeScoreFilter13    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=0.128;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=45.0941;MQ=51.25;MQ0=0;MQRankSum=-0.418;QD=2.0;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:102,20:122:99:275,0,3361
20    29652010    rs78663325    C    T    512.92    HaplotypeScoreFilter13    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.508;DB;DP=161;Dels=0.0;FS=6.88;HRun=1;HaplotypeScore=37.3654;MQ=51.72;MQ0=0;MQRankSum=-0.785;QD=3.19;ReadPosRankSum=0.048;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:128,33:161:99:543,0,4392
20    29652036    rs62206781    C    T    3359.22    HaplotypeScoreFilter13    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=246;DS;Dels=0.02;FS=2.957;HRun=0;HaplotypeScore=13.6978;MQ=52.88;MQ0=0;MQRankSum=1.295;QD=13.44;ReadPosRankSum=0.4;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:138,108:246:99:3359,0,4593
20    29652065    rs73611950    A    G    1445.43    PASS    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=0.776;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=11.5167;MQ=53.04;MQ0=1;MQRankSum=1.01;QD=5.78;ReadPosRankSum=0.934;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:186,64:250:99:1475,0,6200
20    29652083    rs66615221    C    T    2503.69    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.223;DB;DP=250;DS;Dels=0.0;FS=0.707;HRun=0;HaplotypeScore=1.5362;MQ=52.24;MQ0=2;MQRankSum=0.999;QD=10.01;ReadPosRankSum=1.727;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:156,94:250:99:2534,0,4809
20    29652099    rs74613177    G    T    1405.54    HaplotypeScoreFilter13;SnpCluster    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=248;DS;Dels=0.0;FS=2.275;HRun=2;HaplotypeScore=229.3349;MQ=51.6;MQ0=2;MQRankSum=-0.224;QD=5.67;ReadPosRankSum=0.161;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:175,64:248:99:1436,0,5404
20    29652102    .    C    CT    1504.06    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=3.592;DP=247;DS;FS=0.643;HRun=5;HaplotypeScore=3033.9375;IndelType=I;MQ=51.44;MQ0=2;MQRankSum=-1.795;QD=6.02;ReadPosRankSum=0.478;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:198,52:247:99:1543,0,4434
20    29652102    rs71264009    C    A    596.29    HaplotypeScoreFilter13;SnpCluster    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.46;DB;DP=250;DS;Dels=0.0;FS=8.074;HRun=0;HaplotypeScore=227.3367;MQ=51.56;MQ0=2;MQRankSum=1.314;QD=2.39;ReadPosRankSum=0.5;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:210,39:250:99:626,0,6596
20    29652105    rs76299428    T    C    1075.30    HaplotypeScoreFilter13;SnpCluster    AB=0.768;AC=1;AF=0.50;AN=2;BaseQRankSum=2.079;DB;DP=250;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=184.3186;MQ=51.72;MQ0=2;MQRankSum=2.531;QD=4.3;ReadPosRankSum=1.705;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:192,58:250:99:1105,0,4113
20    29652107    rs62206782    T    G    1138.42    HaplotypeScoreFilter13;SnpCluster    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=1.696;DB;DP=250;DS;Dels=0.0;FS=0.605;HRun=1;HaplotypeScore=178.3239;MQ=51.97;MQ0=2;MQRankSum=1.586;QD=4.55;ReadPosRankSum=1.057;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:164,61:250:99:1168,0,3481
20    29652138    rs77358300    C    G    235.40    HaplotypeScoreFilter13;QDFilter2    AB=0.894;AC=1;AF=0.50;AN=2;BaseQRankSum=0.553;DB;DP=250;DS;Dels=0.0;FS=2.909;HRun=1;HaplotypeScore=23.4272;MQ=52.2;MQ0=2;MQRankSum=3.833;QD=0.94;ReadPosRankSum=-0.211;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:210,25:250:99:265,0,6211
20    29652147    .    A    G    230.38    HaplotypeScoreFilter13;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.119;DP=250;DS;Dels=0.0;FS=6.767;HRun=0;HaplotypeScore=37.5234;MQ=52.63;MQ0=3;MQRankSum=2.228;QD=0.92;ReadPosRankSum=-1.504;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:220,30:250:99:260,0,6563
20    29652166    rs79732696    G    A    242.20    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.877;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=244;DS;Dels=0.0;FS=2.92;HRun=1;HaplotypeScore=103.435;MQ=51.4;MQ0=1;MQRankSum=2.791;QD=0.99;ReadPosRankSum=-0.418;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:214,30:244:99:272,0,5932
20    29652172    rs78862124    T    C    4808.94    HaplotypeScoreFilter13;SnpCluster    AB=0.137;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.736;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=117.6406;MQ=51.78;MQ0=1;MQRankSum=-3.669;QD=19.31;ReadPosRankSum=-0.04;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:34,215:249:99:4809,0,668
20    29652173    rs79057885    G    A    677.85    HaplotypeScoreFilter13;SnpCluster    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=3.192;DB;DP=250;DS;Dels=0.0;FS=4.807;HRun=0;HaplotypeScore=144.4437;MQ=51.73;MQ0=1;MQRankSum=-5.033;QD=2.71;ReadPosRankSum=1.644;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:171,77:250:99:708,0,5223
20    29652183    rs71276709    G    A    663.21    HaplotypeScoreFilter13    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=1.855;DB;DP=240;DS;Dels=0.0;FS=11.709;HRun=0;HaplotypeScore=104.8287;MQ=51.28;MQ0=0;MQRankSum=-1.49;QD=2.76;ReadPosRankSum=0.952;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:188,51:240:99:693,0,5313
20    29652191    rs62206784    C    T    4966.45    HaplotypeScoreFilter13;SnpCluster    AB=0.195;AC=1;AF=0.50;AN=2;BaseQRankSum=9.423;DB;DP=236;DS;Dels=0.0;FS=0.933;HRun=1;HaplotypeScore=139.4743;MQ=52.1;MQ0=0;MQRankSum=-2.733;QD=21.04;ReadPosRankSum=0.543;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:46,190:236:99:4966,0,958
20    29652194    rs34913243    C    T    253.83    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.868;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DB;DP=219;DS;Dels=0.0;FS=4.934;HRun=1;HaplotypeScore=79.7812;MQ=51.81;MQ0=0;MQRankSum=0.893;QD=1.16;ReadPosRankSum=1.165;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:190,29:219:99:284,0,5620
20    29652196    rs62206785    T    C    703.15    HaplotypeScoreFilter13;SnpCluster    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.767;DB;DP=215;DS;Dels=0.0;FS=2.696;HRun=0;HaplotypeScore=85.6956;MQ=51.97;MQ0=0;MQRankSum=3.306;QD=3.27;ReadPosRankSum=1.521;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:180,35:215:99:733,0,5196
20    29652235    rs79475704    C    G    33.44    HaplotypeScoreFilter13;QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=193;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=27.7647;MQ=48.32;MQ0=1;MQRankSum=1.9;QD=0.17;ReadPosRankSum=-0.62;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:165,28:193:63.43:63,0,4745
20    29652236    rs62206786    G    C    4147.56    HaplotypeScoreFilter13    AB=0.156;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.938;DB;DP=192;DS;Dels=0.0;FS=3.942;HRun=1;HaplotypeScore=27.8964;MQ=48.25;MQ0=1;MQRankSum=-3.419;QD=21.6;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,162:192:99:4148,0,682
20    29652254    rs77357187    G    A    1302.49    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.912;DB;DP=163;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.8712;MQ=46.6;MQ0=6;MQRankSum=-0.141;QD=7.99;ReadPosRankSum=1.335;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:103,59:163:99:1332,0,3016
20    29652273    rs111926593    ACAT    A    52.54    QDFilter2    AB=0.936;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.926;DB;DP=122;DS;FS=0.0;HRun=0;HaplotypeScore=1723.0433;IndelType=D;MQ=46.37;MQ0=7;MQRankSum=-2.235;QD=0.4;ReadPosRankSum=-1.079;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:122,9:122:91.57:92,0,6512
20    29652294    rs148337041    C    A    461.53    HaplotypeScoreFilter13;MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.112;DB;DP=85;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=20.8338;MQ=39.5;MQ0=9;MQRankSum=-1.044;QD=5.43;ReadPosRankSum=-1.728;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:60,25:85:99:492,0,1609
20    29652303    rs62206787    T    C    1138.65    HaplotypeScoreFilter13;MQFilter40    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=23.8101;MQ=34.28;MQ0=9;MQRankSum=-3.951;QD=16.99;ReadPosRankSum=-2.041;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,56:67:99:1169,0,161
20    29652344    rs62206788    G    A    523.34    MQFilter40;SnpCluster    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.658;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.9835;MQ=39.21;MQ0=7;MQRankSum=-1.898;QD=16.35;ReadPosRankSum=0.658;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,28:32:79.36:553,0,79
20    29652349    rs112140820    C    G    122.70    HaplotypeScoreFilter13;SnpCluster    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.332;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=26.4964;MQ=41.92;MQ0=4;MQRankSum=-0.111;QD=4.38;ReadPosRankSum=1.143;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,7:28:99:153,0,479
20    29652352    rs62206789    C    T    524.15    HaplotypeScoreFilter13;SnpCluster    AB=0.148;AC=1;AF=0.50;AN=2;BaseQRankSum=2.068;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=27.4122;MQ=42.69;MQ0=3;MQRankSum=-2.312;QD=19.41;ReadPosRankSum=2.068;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,23:27:79.99:554,0,80
20    29652355    rs111401906    CT    C    380.39    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=0.953;DB;DP=24;FS=0.0;HRun=1;HaplotypeScore=346.5466;IndelType=D;MQ=43.05;MQ0=2;MQRankSum=-0.433;QD=14.09;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,13:24:99:419,0,464
20    29652403    rs139825210    A    T    67.37    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.152;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9993;MQ=44.96;MQ0=0;MQRankSum=0.453;QD=4.21;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,5:16:97.36:97,0,287
20    29652417    rs75343184    T    A    64.85    MQFilter40    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9997;MQ=39.72;MQ0=0;MQRankSum=-0.736;QD=10.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,5:6:29.72:95,0,30
20    29652427    rs75147516    T    C    55.26    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=-1.38;QD=9.21;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:67.95:85,0,68
20    29652451    rs73611955    C    T    58.28    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=37.32;MQ0=0;MQRankSum=-0.731;QD=11.66;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,4:5:29.20:88,0,29
20    29845273    rs144787833    G    A    44.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.83;ReadPosRankSum=0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB115;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400552    GT:AD:DP:GQ:PL    0/1:1,2:3:30.28:74,0,30
20    29847211    rs6088879    T    C    181.25    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.66;QD=12.95;ReadPosRankSum=-0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB115;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400552    GT:AD:DP:GQ:PL    0/1:7,6:13:99:211,0,209
20    29965014    rs709045    T    C    585.67    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.27;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=0.371;QD=11.71;ReadPosRankSum=0.891;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253381    GT:AD:DP:GQ:PL    0/1:26,24:50:99:616,0,859
20    29965842    rs6058918    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253381    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
20    29966275    rs2223527    G    A    654.13    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.66;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.175;QD=15.21;ReadPosRankSum=0.498;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253381    GT:AD:DP:GQ:PL    0/1:21,22:43:99:684,0,726
20    29977156    rs2295500    G    A    196.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.545;QD=14.05;ReadPosRankSum=1.524;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB119;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339144    GT:AD:DP:GQ:PL    0/1:7,7:14:99:227,0,251
20    29978216    rs2206381    T    C    1708.10    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.426;DB;DP=132;Dels=0.0;FS=9.545;HRun=0;HaplotypeScore=2.9419;MQ=59.19;MQ0=0;MQRankSum=1.875;QD=12.94;ReadPosRankSum=-0.269;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB119;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339144    GT:AD:DP:GQ:PL    0/1:72,60:132:99:1738,0,2063
20    30037783    rs2273468    C    T    578.63    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.9;DB;DP=41;Dels=0.0;FS=4.807;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.65;QD=14.11;ReadPosRankSum=1.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEFB123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376309    GT:AD:DP:GQ:PL    0/1:21,20:41:99:609,0,726
20    30142532    rs34318308    C    A    342.54    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.81;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5872;MQ=58.15;MQ0=0;MQRankSum=-1.797;QD=10.7;ReadPosRankSum=1.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HM13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464173    GT:AD:DP:GQ:PL    0/1:18,14:32:99:373,0,484
20    30354257    rs35700111    G    GGT    88.09    PASS    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=119.7491;IndelType=I;MQ=58.02;MQ0=0;MQRankSum=0.678;QD=4.0;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300403    GT:AD:DP:GQ:PL    0/1:15,4:22:99:127,0,154
20    30452782    rs4911536    C    T    444.43    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=0.771;DB;DP=41;Dels=0.0;FS=6.909;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.447;QD=10.84;ReadPosRankSum=-1.259;SNPEFF_AMINO_ACID_CHANGE=R43Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_30452756_30452805;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DUSP15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375953    GT:AD:DP:GQ:PL    0/1:26,15:41:99:474,0,781
20    30508460    rs4911538    A    C    31.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=6.33;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310998    GT:AD:DP:GQ:PL    0/1:2,3:5:61.63:62,0,71
20    30511108    rs6061032    G    A    261.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.002;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.237;QD=16.34;ReadPosRankSum=-0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310998    GT:AD:DP:GQ:PL    0/1:6,9:16:99:291,0,130
20    30513735    rs4911195    C    T    875.97    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.182;DB;DP=69;Dels=0.0;FS=0.921;HRun=2;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=1.49;QD=12.7;ReadPosRankSum=-1.201;SNPEFF_AMINO_ACID_CHANGE=R182;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_30513676_30513763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375921    GT:AD:DP:GQ:PL    0/1:36,33:69:99:906,0,1133
20    30522508    .    C    T    555.53    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.96;DP=43;Dels=0.0;FS=3.123;HRun=0;HaplotypeScore=1.7333;MQ=57.71;MQ0=0;MQRankSum=0.456;QD=12.92;ReadPosRankSum=-0.013;SNPEFF_AMINO_ACID_CHANGE=R242C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_30522495_30522691;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375934    GT:AD:DP:GQ:PL    0/1:20,23:43:99:586,0,683
20    30661297    rs2297304    G    A    134.02    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=12.18;ReadPosRankSum=1.186;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470092    GT:AD:DP:GQ:PL    0/1:6,5:11:99:164,0,216
20    30662274    rs6061154    C    G    35.12    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=5.85;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470092    GT:AD:DP:GQ:PL    0/1:2,3:6:65.11:65,0,72
20    30671875    rs242607    C    T    589.83    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=0.0;QD=19.03;ReadPosRankSum=0.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375852    GT:AD:DP:GQ:PL    0/1:10,21:31:99:620,0,233
20    30681543    rs980368    A    G    31.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375852    GT:AD:DP:GQ:PL    0/1:4,2:6:61.90:62,0,149
20    30681999    rs6121337    T    C    38.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375852    GT:AD:DP:GQ:PL    0/1:2,3:5:68.61:69,0,73
20    30689092    rs76379542    C    T    141.70    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=10.9;ReadPosRankSum=-0.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375852    GT:AD:DP:GQ:PL    0/1:7,6:13:99:172,0,221
20    30742996    rs1205843    G    T    752.10    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.63;DB;DP=64;Dels=0.0;FS=4.424;HRun=1;HaplotypeScore=2.7218;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=11.75;ReadPosRankSum=-0.384;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TM9SF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217315    GT:AD:DP:GQ:PL    0/1:34,30:64:99:782,0,957
20    31019024    rs2295765    C    T    547.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=36.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470145    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:581,45,0
20    31022959    rs6058694    T    C    2925.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.399;MQ=59.76;MQ0=0;QD=37.03;SNPEFF_AMINO_ACID_CHANGE=L736P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31022475_31025141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412498    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2959,223,0
20    31025219    .    A    G    223.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.928;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.474;QD=11.18;ReadPosRankSum=1.172;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASXL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412498    GT:AD:DP:GQ:PL    0/1:10,10:20:99:254,0,274
20    31097860    rs293565    A    G    227.52    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.666;QD=25.28;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201961    GT:AD:DP:GQ:PL    0/1:2,7:9:43.33:258,0,43
20    31097877    rs293566    T    C    99.96    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=19.99;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201961    GT:AD:DP:GQ:PL    0/1:1,4:5:25.61:130,0,26
20    31099311    rs159428    T    C    834.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=29.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201961    GT:AD:DP:GQ:PL    1/1:0,28:28:69.20:867,69,0
20    31277890    rs28402080    A    G    122.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.555;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=48.79;MQ0=1;MQRankSum=-1.369;QD=8.72;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=BAK1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317045    GT:AD:DP:GQ:PL    0/1:7,7:14:99:152,0,250
20    31291161    rs9421    C    T    753.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.263;DB;DP=45;Dels=0.0;FS=5.27;HRun=0;HaplotypeScore=1.8606;MQ=58.97;MQ0=0;MQRankSum=-0.697;QD=16.74;ReadPosRankSum=2.204;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278980    GT:AD:DP:GQ:PL    0/1:20,25:45:99:783,0,610
20    31294655    rs28548540    A    G    132.61    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.387;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=12.06;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMMD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000278980    GT:AD:DP:GQ:PL    0/1:6,5:11:99:163,0,210
20    31367948    rs6058885    C    T    466.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.45;SNPEFF_AMINO_ACID_CHANGE=S9;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31367658_31367951;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,17:17:36.12:500,36,0
20    31369136    rs79107572    AC    A    1343.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=1;HaplotypeScore=112.5041;IndelType=D;MQ=60.88;MQ0=0;QD=38.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1385,99,0
20    31374259    rs2424913    C    T    720.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=30.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,24:24:57.17:754,57,0
20    31374520    rs2424914    A    G    765.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:799,60,0
20    31374991    rs4911107    G    A    2220.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2254,166,0
20    31376490    rs4911260    T    C    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
20    31381229    rs993419    G    A    127.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:160,12,0
20    31384801    rs6058890    C    T    5934.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4385;MQ=59.47;MQ0=0;QD=34.11;SNPEFF_AMINO_ACID_CHANGE=L544F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31384747_31384872;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537219    GT:AD:DP:GQ:PL    1/1:0,174:174:99:5935,457,0
20    31384880    rs6057648    C    A    2591.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.5317;MQ=58.45;MQ0=0;QD=34.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537219    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2625,208,0
20    31386347    rs6058891    T    C    516.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.32;MQ0=0;QD=30.37;SNPEFF_AMINO_ACID_CHANGE=C428;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31386266_31386449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456297    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:549,42,0
20    31386449    rs2424922    T    C    380.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.27;MQ0=0;QD=21.15;SNPEFF_AMINO_ACID_CHANGE=Y462;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31386266_31386449;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000456297    GT:AD:DP:GQ:PL    1/1:0,18:18:33.10:414,33,0
20    31387954    rs1997797    C    G    1532.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537219    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1566,132,0
20    31388461    rs6058892    C    T    268.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537219    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:302,24,0
20    31388636    rs2424928    T    C    4628.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9981;MQ=59.42;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000537219    GT:AD:DP:GQ:PL    1/1:0,151:151:99:4628,349,0
20    31389009    rs2065576    C    T    343.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375623    GT:AD:DP:GQ:PL    1/1:0,11:12:30.09:377,30,0
20    31390533    rs2064350    T    C    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375623    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
20    31393352    rs4911262    G    A    255.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375623    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
20    31393803    rs4911263    T    C    230.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:263,21,0
20    31395477    rs6119286    G    A    1286.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201963    GT:AD:DP:GQ:PL    1/1:0,38:38:96.30:1319,96,0
20    31421748    rs73904049    T    C    729.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPRE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375571    GT:AD:DP:GQ:PL    1/1:0,24:24:66.18:763,66,0
20    31446645    rs853853    A    G    796.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6385;MQ=58.95;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:830,63,0
20    31446858    rs8123073    A    G    2276.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.48;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2309,169,0
20    31466347    rs13037174    C    T    493.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=32.61;MQ0=1;QD=23.49;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,20:21:48.12:526,48,0
20    31466364    rs13037187    C    T    743.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.3;MQ0=1;QD=27.53;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,25:27:66.19:776,66,0
20    31466387    rs13037762    A    G    1024.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.43;MQ0=1;QD=27.68;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,36:37:96.21:1057,96,0
20    31473483    rs6119300    G    C    436.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=29.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467185    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:470,36,0
20    31477341    rs142925643    A    C    276.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=27.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467185    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:310,27,0
20    31477397    rs6058937    G    A    174.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467185    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
20    31480788    rs2002257    T    C    89.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467185    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
20    31480961    rs2377734    C    T    834.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=30.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467185    GT:AD:DP:GQ:PL    1/1:0,26:27:63.21:867,63,0
20    31486206    rs6058948    A    G    726.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533479    GT:AD:DP:GQ:PL    1/1:0,22:22:66.18:759,66,0
20    31486559    rs6058949    T    C    143.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533479    GT:AD:DP:GQ:PL    1/1:0,9:9:18.01:177,18,0
20    31494382    rs6120033    G    A    1861.11    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=-0.684;QD=32.65;ReadPosRankSum=1.479;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533479    GT:AD:DP:GQ:PL    1/1:2,55:57:99:1894,100,0
20    31518298    rs6058961    A    G    409.14    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=1.585;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=10.49;ReadPosRankSum=0.614;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,16:39:99:439,0,796
20    31518757    rs6120045    T    G    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.93;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EFCAB8;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:69,0,28
20    31571485    rs6087436    C    T    271.82    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.442;DB;DP=19;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.706;QD=14.31;ReadPosRankSum=0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356173    GT:AD:DP:GQ:PL    0/1:10,9:19:99:302,0,323
20    31573528    rs2274343    A    C    206.54    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.885;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=60.0;MQ0=0;MQRankSum=-0.186;QD=7.65;ReadPosRankSum=1.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356173    GT:AD:DP:GQ:PL    0/1:19,8:27:99:237,0,637
20    31573769    rs13040459    T    G    126.39    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.689;QD=9.72;ReadPosRankSum=1.461;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356173    GT:AD:DP:GQ:PL    0/1:7,6:13:99:156,0,216
20    31577394    rs6058991    G    A    229.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.473;QD=14.37;ReadPosRankSum=-0.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356173    GT:AD:DP:GQ:PL    0/1:8,8:16:99:260,0,273
20    31577572    rs6088057    C    T    106.60    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=15.23;ReadPosRankSum=0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356173    GT:AD:DP:GQ:PL    0/1:3,4:7:86.34:137,0,86
20    31583384    rs2070310    A    G    491.32    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=47;Dels=0.0;FS=4.371;HRun=1;HaplotypeScore=1.933;MQ=57.6;MQ0=0;MQRankSum=0.506;QD=10.45;ReadPosRankSum=0.844;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375519    GT:AD:DP:GQ:PL    0/1:29,18:47:99:521,0,913
20    31583966    rs2070311    T    G    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.49;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375519    GT:AD:DP:GQ:PL    0/1:2,2:4:54.41:72,0,54
20    31584178    rs6141862    G    A    152.35    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.312;DB;DP=26;Dels=0.0;FS=2.015;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.058;QD=5.86;ReadPosRankSum=-1.503;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375519    GT:AD:DP:GQ:PL    0/1:19,7:26:99:182,0,683
20    31585292    rs221975    A    G    77.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.49;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375519    GT:AD:DP:GQ:PL    0/1:2,3:5:68.47:107,0,68
20    31585351    rs452299    C    G    192.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.637;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=16.07;ReadPosRankSum=1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375519    GT:AD:DP:GQ:PL    0/1:4,8:12:99:223,0,131
20    31585415    rs190097    T    C    158.40    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.328;DB;DP=28;Dels=0.0;FS=1.638;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.66;ReadPosRankSum=0.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375519    GT:AD:DP:GQ:PL    0/1:19,9:28:99:188,0,638
20    31585545    rs440139    C    T    258.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.116;DB;DP=20;Dels=0.0;FS=4.887;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-1.196;QD=12.9;ReadPosRankSum=-1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375519    GT:AD:DP:GQ:PL    0/1:8,12:20:99:288,0,249
20    31587752    rs414191    G    C    43.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.62;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=C145W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31587659_31587941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420875    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:74,0,33
20    31587793    rs15850    A    G    62.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=15.63;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=C132R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31587659_31587941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420875    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:93,0,30
20    31590686    rs1133358    C    A    415.90    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=0.356;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=16.64;ReadPosRankSum=0.575;SNPEFF_AMINO_ACID_CHANGE=E28D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31590667_31590725;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420875    GT:AD:DP:GQ:PL    0/1:11,14:25:99:446,0,326
20    31598781    rs6120085    T    C    718.09    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=46;Dels=0.0;FS=4.278;HRun=1;HaplotypeScore=1.8316;MQ=59.5;MQ0=0;MQRankSum=1.272;QD=15.61;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170150    GT:AD:DP:GQ:PL    0/1:19,27:46:99:748,0,624
20    31598994    rs6141358    G    A    207.85    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8801;MQ=55.91;MQ0=0;MQRankSum=1.308;QD=7.42;ReadPosRankSum=-0.321;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170150    GT:AD:DP:GQ:PL    0/1:16,11:28:99:238,0,511
20    31606237    rs3746388    C    T    241.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.313;DB;DP=17;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.313;QD=14.22;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170150    GT:AD:DP:GQ:PL    0/1:8,8:17:99:272,0,231
20    31607654    rs45626037    T    C    67.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.25;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170150    GT:AD:DP:GQ:PL    0/1:3,3:6:97.50:98,0,98
20    31608250    rs6057703    C    A    379.19    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.767;DB;DP=31;Dels=0.0;FS=8.916;HRun=1;HaplotypeScore=0.0;MQ=57.58;MQ0=0;MQRankSum=-0.373;QD=12.23;ReadPosRankSum=0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170150    GT:AD:DP:GQ:PL    0/1:16,15:31:99:409,0,494
20    31609433    rs13043556    T    C    119.58    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.493;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=1.954;QD=9.2;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000170150    GT:AD:DP:GQ:PL    0/1:7,6:13:99:150,0,233
20    31609581    rs17124003    C    T    730.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.031;DB;DP=48;Dels=0.0;FS=1.117;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.711;QD=15.22;ReadPosRankSum=0.856;SNPEFF_AMINO_ACID_CHANGE=V437;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31609529_31609605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000170150    GT:AD:DP:GQ:PL    0/1:24,24:48:99:760,0,605
20    31619578    rs6059027    A    G    55.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
20    31620535    rs2070314    A    G    84.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
20    31622083    rs2070317    G    A    2193.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.82;SNPEFF_AMINO_ACID_CHANGE=V97I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31621992_31622096;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2227,163,0
20    31622768    rs6059032    C    A    230.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.751;QD=25.65;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:1,8:9:21.07:264,21,0
20    31622839    rs6059033    T    C    948.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:982,75,0
20    31624368    rs6059035    C    T    1943.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9663;MQ=59.66;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1976,147,0
20    31626558    rs6088078    G    C    1145.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,33:33:90.28:1179,90,0
20    31626621    rs6057708    C    T    3453.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9989;MQ=59.76;MQ0=0;QD=35.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3453,265,0
20    31627291    rs4911287    A    G    3050.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9867;MQ=59.75;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=S347G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31627153_31627326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,92:92:99:3084,235,0
20    31629911    rs2070319    G    A    294.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
20    31631314    rs451899    T    C    370.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349552    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:403,30,0
20    31643511    rs384430    A    G    34.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
20    31644201    rs6059058    G    A    301    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:334,24,0
20    31644520    rs408538    T    C    635.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:669,54,0
20    31647126    rs6088082    C    T    111.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:144,12,0
20    31647864    rs6088084    C    A    290.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.162;DB;DP=28;Dels=0.0;FS=1.562;HRun=2;HaplotypeScore=0.9983;MQ=58.33;MQ0=0;MQRankSum=0.812;QD=10.39;ReadPosRankSum=1.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    0/1:16,12:28:99:321,0,435
20    31647935    rs2424936    G    T    125.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.932;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.387;QD=10.43;ReadPosRankSum=1.186;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    0/1:6,6:12:99:155,0,216
20    31651583    rs403461    A    G    103.55    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=14.79;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    0/1:3,4:7:99:134,0,99
20    31652292    rs4911290    G    A    347.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=1.418;QD=9.94;ReadPosRankSum=-0.921;SNPEFF_AMINO_ACID_CHANGE=V228M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31652263_31652354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    0/1:21,14:35:99:378,0,637
20    31654447    rs761937    T    C    76.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=12.76;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,104
20    31656632    rs6057717    C    G    539.89    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.141;DB;DP=34;Dels=0.0;FS=3.583;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.056;QD=15.88;ReadPosRankSum=0.019;SNPEFF_AMINO_ACID_CHANGE=H334Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31656609_31656779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    0/1:12,21:34:99:570,0,379
20    31656837    rs2424938    G    A    316.07    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.306;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.306;QD=21.07;ReadPosRankSum=-1.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375494    GT:AD:DP:GQ:PL    0/1:5,10:15:99:346,0,153
20    31673846    rs2070325    A    G    617.84    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.177;DB;DP=69;Dels=0.0;FS=1.052;HRun=0;HaplotypeScore=2.1992;MQ=59.67;MQ0=0;MQRankSum=1.589;QD=8.83;ReadPosRankSum=0.046;SNPEFF_AMINO_ACID_CHANGE=I268V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31673827_31673970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375483    GT:AD:DP:GQ:PL    0/1:45,24:69:99:648,0,1304
20    31676622    rs2424949    G    T    275.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.265;QD=15.31;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375483    GT:AD:DP:GQ:PL    0/1:9,9:18:99:306,0,316
20    31676804    rs2889732    A    C    1152.04    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=1.253;DB;DP=99;Dels=0.0;FS=9.869;HRun=2;HaplotypeScore=3.4746;MQ=59.77;MQ0=0;MQRankSum=0.935;QD=11.64;ReadPosRankSum=0.554;SNPEFF_AMINO_ACID_CHANGE=N320T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31676772_31676835;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375483    GT:AD:DP:GQ:PL    0/1:56,43:99:99:1182,0,1535
20    31677474    rs7271727    A    G    58.44    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.715;QD=5.31;ReadPosRankSum=-0.566;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375483    GT:AD:DP:GQ:PL    0/1:8,3:11:88.44:88,0,259
20    31677476    rs6057722    T    C    48.91    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.382;QD=4.45;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375483    GT:AD:DP:GQ:PL    0/1:8,3:11:78.90:79,0,235
20    31688241    rs11699009    T    C    490.44    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.933;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=11.15;ReadPosRankSum=-0.899;SNPEFF_AMINO_ACID_CHANGE=F527L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31688232_31688299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375483    GT:AD:DP:GQ:PL    0/1:25,18:44:99:520,0,715
20    31688260    rs11696307    C    T    410.80    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DB;DP=42;Dels=0.0;FS=1.252;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.499;QD=9.78;ReadPosRankSum=-0.21;SNPEFF_AMINO_ACID_CHANGE=T533I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31688232_31688299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375483    GT:AD:DP:GQ:PL    0/1:27,15:42:99:441,0,783
20    31688330    rs11696310    C    T    287.42    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=19;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.755;QD=15.13;ReadPosRankSum=-0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BPIFB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375483    GT:AD:DP:GQ:PL    0/1:9,10:19:99:317,0,242
20    31756954    rs17124277    G    A    1012.24    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.428;DB;DP=99;Dels=0.0;FS=1.679;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.131;QD=10.22;ReadPosRankSum=-1.687;SNPEFF_AMINO_ACID_CHANGE=M1I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_20_31756937_31757108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:58,41:99:99:1042,0,1845
20    31757078    rs6059139    G    A    508.34    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=0.596;DB;DP=50;Dels=0.0;FS=7.754;HRun=0;HaplotypeScore=0.9734;MQ=59.54;MQ0=0;MQRankSum=0.758;QD=10.17;ReadPosRankSum=0.172;SNPEFF_AMINO_ACID_CHANGE=G43R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31756937_31757108;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:32,18:50:99:538,0,1081
20    31760708    rs6579083    G    A    315.84    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.801;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.136;QD=12.63;ReadPosRankSum=-0.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:12,13:25:99:346,0,377
20    31762003    rs79337613    A    G    515.08    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=41;Dels=0.0;FS=5.772;HRun=0;HaplotypeScore=0.5784;MQ=59.44;MQ0=0;MQRankSum=-0.613;QD=12.56;ReadPosRankSum=-0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:21,20:41:99:545,0,635
20    31762043    rs79185071    G    A    241.84    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.722;DB;DP=17;Dels=0.0;FS=3.274;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.048;QD=14.23;ReadPosRankSum=0.337;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:9,8:17:99:272,0,322
20    31763084    rs17124290    G    A    309.51    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=58.29;MQ0=0;MQRankSum=-0.246;QD=14.07;ReadPosRankSum=0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:11,10:22:99:340,0,375
20    31765890    rs8125148    T    C    110.66    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=22.13;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:141,0,27
20    31765901    rs8125150    T    C    146.92    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.49;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:1,5:6:22.59:177,0,23
20    31767470    rs1075435    G    C    997.33    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=76;Dels=0.0;FS=11.904;HRun=1;HaplotypeScore=0.9997;MQ=59.39;MQ0=0;MQRankSum=0.652;QD=13.12;ReadPosRankSum=1.001;SNPEFF_AMINO_ACID_CHANGE=V236L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31767410_31767473;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:37,39:76:99:1027,0,1193
20    31767508    rs1075436    A    G    828.71    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.127;DB;DP=58;Dels=0.0;FS=1.22;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=2.389;QD=14.29;ReadPosRankSum=1.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:28,30:58:99:859,0,848
20    31768145    rs747136    A    C    104.65    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=11.63;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253362    GT:AD:DP:GQ:PL    0/1:5,4:9:99:135,0,164
20    31786187    rs73252088    A    G    177.98    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.647;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.097;QD=12.71;ReadPosRankSum=0.581;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375465    GT:AD:DP:GQ:PL    0/1:8,6:14:99:208,0,241
20    31786991    rs6057751    C    T    145.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=12.1;ReadPosRankSum=0.467;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375465    GT:AD:DP:GQ:PL    0/1:6,6:12:99:175,0,221
20    31787102    rs6057752    A    G    820.29    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=0.672;DB;DP=51;Dels=0.0;FS=1.114;HRun=3;HaplotypeScore=1.9399;MQ=59.46;MQ0=0;MQRankSum=-0.029;QD=16.08;ReadPosRankSum=-1.354;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000420169    GT:AD:DP:GQ:PL    0/1:19,32:51:99:850,0,584
20    31787424    rs117911382    A    C    36.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.08;ReadPosRankSum=0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375465    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:66,0,29
20    31789368    rs6059153    T    A    1295.68    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=4.047;DB;DP=98;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6946;MQ=59.1;MQ0=0;MQRankSum=-0.089;QD=13.22;ReadPosRankSum=-1.297;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375465    GT:AD:DP:GQ:PL    0/1:50,48:98:99:1326,0,1472
20    31789589    rs6059154    C    T    101.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=-0.365;QD=10.19;ReadPosRankSum=-0.741;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375465    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,207
20    31790438    rs6059156    C    T    652.46    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=3.832;DB;DP=32;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.507;QD=20.39;ReadPosRankSum=1.399;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375465    GT:AD:DP:GQ:PL    0/1:13,19:32:99:682,0,287
20    31792941    rs735624    G    A    662.42    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.494;QD=15.05;ReadPosRankSum=1.033;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375465    GT:AD:DP:GQ:PL    0/1:21,23:44:99:692,0,645
20    31793004    rs735625    C    T    495.55    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.761;DB;DP=38;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=4.4111;MQ=58.81;MQ0=0;MQRankSum=0.206;QD=12.71;ReadPosRankSum=-0.587;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420169    GT:AD:DP:GQ:PL    0/1:17,21:38:99:526,0,459
20    31793069    rs911139    T    G    418.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=BPIFA4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420169    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:451,36,0
20    31811551    rs725914    C    T    214.58    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.634;QD=11.92;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BPIFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375452    GT:AD:DP:GQ:PL    0/1:10,7:18:99:245,0,332
20    31812206    rs112731808    A    G    967.78    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=3.609;DB;DP=64;Dels=0.0;FS=5.014;HRun=0;HaplotypeScore=1.399;MQ=59.64;MQ0=0;MQRankSum=0.777;QD=15.12;ReadPosRankSum=0.323;SNPEFF_AMINO_ACID_CHANGE=I108M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31812161_31812268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BPIFA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375454    GT:AD:DP:GQ:PL    0/1:31,32:64:99:998,0,864
20    31812298    rs2180674    G    T    627.10    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=42;Dels=0.0;FS=6.318;HRun=1;HaplotypeScore=0.9989;MQ=59.45;MQ0=0;MQRankSum=1.272;QD=14.93;ReadPosRankSum=0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BPIFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375452    GT:AD:DP:GQ:PL    0/1:20,22:42:99:657,0,653
20    31812825    rs6057770    G    A    145.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=14.54;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BPIFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375452    GT:AD:DP:GQ:PL    0/1:5,5:10:99:175,0,152
20    31812923    rs3818222    G    A    1129.55    PASS    AB=0.418;AC=1;AF=0.50;AN=2;BaseQRankSum=3.871;DB;DP=67;Dels=0.0;FS=1.169;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.019;QD=16.86;ReadPosRankSum=0.019;SNPEFF_AMINO_ACID_CHANGE=V100I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31812904_31813053;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BPIFA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375452    GT:AD:DP:GQ:PL    0/1:28,39:67:99:1160,0,732
20    31812949    rs147632261    C    T    1256.02    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=0.458;DB;DP=79;Dels=0.0;FS=2.053;HRun=1;HaplotypeScore=1.7866;MQ=59.71;MQ0=0;MQRankSum=-0.871;QD=15.9;ReadPosRankSum=1.078;SNPEFF_AMINO_ACID_CHANGE=I108;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31812904_31813053;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BPIFA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375452    GT:AD:DP:GQ:PL    0/1:36,43:79:99:1286,0,1058
20    31813134    rs4911305    C    T    472.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.317;DB;DP=27;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.049;QD=17.49;ReadPosRankSum=0.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BPIFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375452    GT:AD:DP:GQ:PL    0/1:12,15:27:99:502,0,399
20    31814348    rs1570033    G    A    605.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BPIFA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375452    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:639,51,0
20    31825373    rs6059181    A    G    60.24    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.05;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:2,3:5:67.19:90,0,67
20    31825436    rs67732256    A    AG    189.13    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=21.4026;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=21.01;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:3,6:9:47.96:228,0,48
20    31825797    rs1407019    G    A    69.46    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.867;DB;DP=16;Dels=0.0;FS=9.792;HRun=1;HaplotypeScore=1.933;MQ=53.95;MQ0=0;MQRankSum=1.2;QD=4.34;ReadPosRankSum=-0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:11,5:16:99:99,0,303
20    31826027    rs6059183    T    C    410.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.109;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.67;MQ0=0;MQRankSum=0.207;QD=12.84;ReadPosRankSum=2.996;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:16,16:32:99:441,0,494
20    31826088    rs36225274    GGCAGTGACCCTGAA    G    640.68    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=247.4762;IndelType=D;MQ=51.93;MQ0=0;MQRankSum=-1.973;QD=37.69;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:8,9:17:99:680,0,1467
20    31826130    rs6141898    G    T    49.24    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.94;MQ0=0;MQRankSum=-2.52;QD=4.48;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:4,7:11:79.24:79,0,144
20    31828254    rs6059186    T    C    891.24    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.05;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.261;QD=14.37;ReadPosRankSum=-0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:32,30:62:99:921,0,1130
20    31828265    rs6059187    A    G    1785.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1818,138,0
20    31829083    rs2273529    G    A    742.47    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=5.57;DB;DP=55;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=13.5;ReadPosRankSum=-0.347;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:30,25:55:99:772,0,816
20    31830260    rs185041484    G    C    237.30    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.91;DB;DP=27;Dels=0.0;FS=1.721;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.539;QD=8.79;ReadPosRankSum=-0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354297    GT:AD:DP:GQ:PL    0/1:18,9:27:99:267,0,486
20    31873706    rs78841773    A    T    108.04    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.01;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    0/1:2,4:6:62.49:138,0,62
20    31873821    rs3746393    C    T    380.05    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.795;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=-0.763;QD=10.27;ReadPosRankSum=-0.795;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    0/1:22,14:37:99:410,0,729
20    31876485    rs2295576    T    C    675.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:709,54,0
20    31876681    rs1078761    A    G    395.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=I84V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31876547_31876688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:429,33,0
20    31888984    rs6120220    T    C    439.99    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=32;Dels=0.0;FS=5.76;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=13.75;ReadPosRankSum=1.284;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    0/1:15,17:32:99:470,0,450
20    31889183    rs6120221    T    C    409.26    PASS    AB=0.66;AC=1;AF=0.50;AN=2;BaseQRankSum=1.111;DB;DP=50;Dels=0.0;FS=1.395;HRun=1;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.617;QD=8.19;ReadPosRankSum=0.73;SNPEFF_AMINO_ACID_CHANGE=S129P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31889039_31889218;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375378    GT:AD:DP:GQ:PL    0/1:33,17:50:99:439,0,1061
20    31890175    rs6120222    G    T    1183.53    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.893;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.7;QD=15.78;ReadPosRankSum=-1.567;SNPEFF_AMINO_ACID_CHANGE=S144I;SNPEFF_CODON_CHANGE=aGt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31890165_31890218;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000375378    GT:AD:DP:GQ:PL    0/1:35,40:75:99:1214,0,1027
20    31890614    rs6120225    T    A    222.72    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.0;QD=20.25;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    0/1:2,8:11:48.17:253,0,48
20    31891003    rs2253335    C    T    212.25    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.663;QD=19.3;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    0/1:4,7:11:99:242,0,127
20    31897554    rs1999663    G    C    937.50    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.092;DB;DP=53;Dels=0.0;FS=2.399;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.742;QD=17.69;ReadPosRankSum=0.045;SNPEFF_AMINO_ACID_CHANGE=S479T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_31897514_31897684;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    0/1:22,31:53:99:967,0,603
20    31897706    rs143120124    G    A    75.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.19;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253354    GT:AD:DP:GQ:PL    0/1:2,3:5:58.74:106,0,59
20    31938106    rs293709    C    A    930.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=26.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BPIFB9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000246222    GT:AD:DP:GQ:PL    1/1:0,35:35:78.21:964,78,0
20    32026566    rs150532233    C    A    801.05    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.947;DB;DP=59;Dels=0.0;FS=2.277;HRun=0;HaplotypeScore=1.873;MQ=59.61;MQ0=0;MQRankSum=-1.783;QD=13.58;ReadPosRankSum=-1.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNTA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217381    GT:AD:DP:GQ:PL    0/1:31,28:59:99:831,0,1021
20    32212690    rs3803939    C    T    576.02    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=4.09;DB;DP=40;Dels=0.0;FS=9.816;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.056;QD=14.4;ReadPosRankSum=1.381;SNPEFF_AMINO_ACID_CHANGE=P251;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_32212570_32212823;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CBFA2T2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397800    GT:AD:DP:GQ:PL    0/1:21,19:40:99:606,0,611
20    32248163    rs3746460    C    T    592.07    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.343;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.9;QD=14.1;ReadPosRankSum=-0.456;SNPEFF_AMINO_ACID_CHANGE=T142;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_32248065_32248201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NECAB3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000246190    GT:AD:DP:GQ:PL    0/1:20,21:42:99:622,0,581
20    32255233    rs3746459    T    C    58.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf144;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375222    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:90,6,0
20    32265839    rs2071054    A    G    62.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=E2F1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343380    GT:AD:DP:GQ:PL    0/1:4,3:7:92.32:92,0,146
20    32295541    rs910397    C    T    834.60    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.327;DB;DP=55;Dels=0.0;FS=1.108;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.31;QD=15.17;ReadPosRankSum=1.006;SNPEFF_AMINO_ACID_CHANGE=V204I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_32294512_32295775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXMP4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000409299    GT:AD:DP:GQ:PL    0/1:25,30:55:99:865,0,682
20    32298323    rs2626529    C    T    121.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.983;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.04;MQ0=0;MQRankSum=1.264;QD=6.77;ReadPosRankSum=-1.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217398    GT:AD:DP:GQ:PL    0/1:12,6:18:99:152,0,393
20    32302321    rs3838023    T    TCAA    276.14    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.356;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=47.7888;IndelType=I;MQ=60.72;MQ0=0;MQRankSum=-0.065;QD=18.41;ReadPosRankSum=-2.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PXMP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217398    GT:AD:DP:GQ:PL    0/1:9,6:15:99:315,0,290
20    32328968    rs6087514    G    T    109.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=18.18;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF341;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342427    GT:AD:DP:GQ:PL    0/1:2,4:6:66.41:139,0,66
20    32336577    rs2245015    C    G    60.48    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-0.727;QD=15.12;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF341;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342427    GT:AD:DP:GQ:PL    0/1:1,3:4:24.12:90,0,24
20    32354990    rs3813920    G    A    162.36    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=23.19;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF341;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342427    GT:AD:DP:GQ:PL    0/1:1,6:7:20.72:192,0,21
20    32378732    rs2747565    G    A    108.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.378;QD=9.07;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF341;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342427    GT:AD:DP:GQ:PL    0/1:6,6:12:99:139,0,176
20    32379263    rs2626551    T    C    129.44    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=2.398;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=10.79;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=A828;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_32378794_32380075;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF341;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342427    GT:AD:DP:GQ:PL    0/1:7,5:12:99:159,0,247
20    32664864    rs10649600    C    CCAG    416.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=67.6721;IndelType=I;MQ=52.04;MQ0=0;QD=52.01;SNPEFF_AMINO_ACID_CHANGE=A164AS;SNPEFF_CODON_CHANGE=gcc/gcCAGc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_20_32664834_32664888;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALY;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333552    GT:AD:DP:GQ:PL    1/1:2,6:8:24.08:458,24,0
20    32665084    rs74408725    C    T    71.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.922;QD=8.99;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333552    GT:AD:DP:GQ:PL    0/1:4,4:8:95.36:102,0,95
20    32666506    .    C    T    115.70    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=19.28;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333552    GT:AD:DP:GQ:PL    0/1:2,4:6:59.43:146,0,59
20    32802415    rs6059723    C    G    798.23    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=2.171;DB;DP=57;Dels=0.0;FS=1.054;HRun=1;HaplotypeScore=0.0;MQ=56.97;MQ0=0;MQRankSum=-1.434;QD=14.0;ReadPosRankSum=0.401;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=XPOTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443317    GT:AD:DP:GQ:PL    0/1:29,28:57:99:828,0,816
20    32848064    .    G    C    463.68    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=3.642;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.442;QD=12.53;ReadPosRankSum=1.691;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASIP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374954    GT:AD:DP:GQ:PL    0/1:20,17:37:99:494,0,631
20    32873619    rs819134    G    A    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AHCY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217426    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
20    32996689    rs3761147    G    T    137.68    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.196;DB;DP=17;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=2.604;MQ=58.63;MQ0=0;MQRankSum=1.513;QD=8.1;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    0/1:10,7:17:99:168,0,288
20    33032915    rs6579167    T    C    83.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
20    33033065    rs11482470    G    GT    307.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.215;DB;DP=48;FS=2.634;HRun=17;HaplotypeScore=376.8681;IndelType=I;MQ=39.27;MQ0=0;MQRankSum=-0.558;QD=6.41;ReadPosRankSum=-1.215;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    1/1:31,6:48:34.35:350,34,0
20    33037336    rs3736762    C    T    303.40    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=18.96;ReadPosRankSum=0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    0/1:6,10:16:99:333,0,186
20    33057954    rs6059856    G    C    2551.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.17;DB;DP=74;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.84;MQ0=0;MQRankSum=0.983;QD=34.48;ReadPosRankSum=0.047;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    1/1:1,73:74:99:2584,159,0
20    33057974    rs11475059    CT    C    1847.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=3;HaplotypeScore=329.5867;IndelType=D;MQ=59.98;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    1/1:3,51:54:99:1889,153,0
20    33063749    rs113766664    C    T    855.90    MQFilter40    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.94;DB;DP=79;Dels=0.0;FS=1.022;HRun=1;HaplotypeScore=1.5778;MQ=37.05;MQ0=1;MQRankSum=-0.715;QD=10.83;ReadPosRankSum=1.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    0/1:46,33:79:99:886,0,1358
20    33063830    rs6059860    A    C    1171    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.618;DB;DP=83;Dels=0.0;FS=3.074;HRun=1;HaplotypeScore=1.6006;MQ=48.58;MQ0=0;MQRankSum=-0.756;QD=14.11;ReadPosRankSum=-0.853;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    0/1:35,48:83:99:1201,0,1109
20    33065365    rs112951794    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
20    33065451    rs111486789    C    G    87.32    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=17.46;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    0/1:1,4:5:24.97:117,0,25
20    33068563    rs6059861    A    T    1428.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262650    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1461,117,0
20    33069164    rs35351679    GT    G    95.72    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=13;FS=0.0;HRun=9;HaplotypeScore=30.3027;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=7.36;ReadPosRankSum=1.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461661    GT:AD:DP:GQ:PL    0/1:7,6:13:99:135,0,108
20    33104131    .    G    C    108.16    QDFilter2    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.641;DP=56;Dels=0.0;FS=14.73;HRun=3;HaplotypeScore=4.6645;MQ=53.95;MQ0=0;MQRankSum=-2.525;QD=1.93;ReadPosRankSum=1.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITCH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374864    GT:AD:DP:GQ:PL    0/1:36,19:56:99:138,0,392
20    33147737    rs6059915    C    G    575.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217446    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:608,48,0
20    33148861    rs6059916    T    G    93.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAP1LC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360668    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
20    33162743    .    C    T    71.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.537;QD=11.88;ReadPosRankSum=0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480175    GT:AD:DP:GQ:PL    0/1:3,3:6:63.16:101,0,63
20    33169285    .    T    C    209.23    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.85;MQ0=0;MQRankSum=-0.556;QD=13.95;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGU;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217446    GT:AD:DP:GQ:PL    0/1:7,8:15:99:239,0,134
20    33297810    rs2378257    G    GC    411.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=121.746;IndelType=I;MQ=46.25;MQ0=0;QD=24.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    1/1:1,10:17:49.96:454,50,0
20    33315271    rs6060019    G    A    251.68    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.033;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=8.99;ReadPosRankSum=-0.689;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:19,9:28:99:282,0,677
20    33320379    rs6060022    T    C    355.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.22;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.33;MQ0=0;MQRankSum=1.049;QD=12.71;ReadPosRankSum=1.342;SNPEFF_AMINO_ACID_CHANGE=I1995V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33320363_33320399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:16,12:28:99:386,0,467
20    33328024    rs6119516    C    T    119.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:152,12,0
20    33329309    rs142540483    C    T    490.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.144;DB;DP=57;Dels=0.0;FS=2.302;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.516;QD=8.61;ReadPosRankSum=0.466;SNPEFF_AMINO_ACID_CHANGE=S1584N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33328167_33331145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:38,19:57:99:521,0,1327
20    33334540    rs910872    T    C    1035.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.74;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1069,81,0
20    33337751    rs3787220    T    C    1193.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.52;DB;DP=40;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.7887;MQ=59.42;MQ0=0;MQRankSum=-1.473;QD=29.85;ReadPosRankSum=-0.606;SNPEFF_AMINO_ACID_CHANGE=P749;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33337206_33338322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    1/1:1,39:40:64.53:1227,65,0
20    33338325    .    TA    T    210.68    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=1.363;DP=49;FS=1.579;HRun=13;HaplotypeScore=194.3916;IndelType=D;MQ=59.28;MQ0=0;MQRankSum=-0.095;QD=4.3;ReadPosRankSum=0.539;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:27,18:49:99:250,0,409
20    33342439    rs1884432    T    C    905.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:939,72,0
20    33342477    rs6087625    G    A    532.60    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=3.49;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.29;QD=14.02;ReadPosRankSum=0.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:21,17:38:99:563,0,550
20    33346556    rs11468960    ATC    A    1538.10    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=7.232;DB;DP=86;FS=0.0;HRun=0;HaplotypeScore=282.9616;IndelType=D;MQ=59.41;MQ0=0;MQRankSum=0.04;QD=17.88;ReadPosRankSum=0.891;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:44,42:86:99:1577,0,2283
20    33346832    rs11479963    GT    G    157.79    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=21;FS=0.0;HRun=13;HaplotypeScore=73.413;IndelType=D;MQ=59.42;MQ0=0;MQRankSum=0.691;QD=7.51;ReadPosRankSum=0.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:12,9:21:19.71:197,0,20
20    33356511    rs2295353    C    T    172.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=17.27;ReadPosRankSum=1.036;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:4,6:10:99:203,0,120
20    33356541    rs2295354    T    C    153.43    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=21.92;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359003    GT:AD:DP:GQ:PL    0/1:2,5:7:54.60:183,0,55
20    33438933    rs193051974    G    A    584.62    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=3.365;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.811;MQ=60.0;MQ0=0;MQRankSum=-0.021;QD=18.86;ReadPosRankSum=-0.145;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336431    GT:AD:DP:GQ:PL    0/1:11,20:31:99:615,0,321
20    33442730    .    A    G    189.83    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.405;DP=15;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.405;QD=12.66;ReadPosRankSum=0.752;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336431    GT:AD:DP:GQ:PL    0/1:8,7:15:99:220,0,288
20    33451148    rs11546155    G    A    142.68    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.295;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.12;QD=8.92;ReadPosRankSum=-0.059;SNPEFF_AMINO_ACID_CHANGE=L125;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33451116_33451351;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336431    GT:AD:DP:GQ:PL    0/1:9,7:16:99:173,0,257
20    33451525    rs187558389    G    A    102.75    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=12;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=1.932;QD=8.56;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=R60C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33451483_33451533;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427420    GT:AD:DP:GQ:PL    0/1:7,5:12:99:133,0,147
20    33463024    .    G    T    491.69    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=0.455;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.376;QD=15.86;ReadPosRankSum=1.206;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336325    GT:AD:DP:GQ:PL    0/1:15,16:31:99:522,0,510
20    33470514    rs6088638    T    C    142.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.002;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.648;QD=9.51;ReadPosRankSum=-1.355;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253382    GT:AD:DP:GQ:PL    0/1:9,6:15:99:173,0,313
20    33470694    rs4911163    C    T    582.52    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.877;DB;DP=57;Dels=0.0;FS=5.497;HRun=2;HaplotypeScore=0.9789;MQ=59.34;MQ0=0;MQRankSum=-1.185;QD=10.22;ReadPosRankSum=1.049;SNPEFF_AMINO_ACID_CHANGE=F42;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33470597_33470792;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336325    GT:AD:DP:GQ:PL    0/1:36,21:57:99:613,0,1133
20    33507324    rs57092223    C    T    459.43    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=3.086;DB;DP=29;Dels=0.0;FS=2.341;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=0.369;QD=15.84;ReadPosRankSum=-1.981;SNPEFF_AMINO_ACID_CHANGE=A15;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33507238_33507375;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542204    GT:AD:DP:GQ:PL    0/1:14,15:29:99:489,0,355
20    33508588    rs3746450    G    T    581.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=36.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468550    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:615,48,0
20    33509071    rs191684165    C    G    681.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.563;QD=13.63;ReadPosRankSum=0.931;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468550    GT:AD:DP:GQ:PL    0/1:25,25:50:99:711,0,804
20    33509275    rs3818273    G    A    113.54    PASS    AB=0.741;AC=1;AF=0.50;AN=2;BaseQRankSum=1.792;DB;DP=27;Dels=0.0;FS=2.31;HRun=2;HaplotypeScore=0.9894;MQ=57.39;MQ0=0;MQRankSum=0.694;QD=4.21;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468550    GT:AD:DP:GQ:PL    0/1:20,7:27:99:144,0,644
20    33509523    rs2273683    C    T    6348    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9732;MQ=59.32;MQ0=0;QD=35.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468550    GT:AD:DP:GQ:PL    1/1:0,177:178:99:6348,488,0
20    33514465    rs6088650    T    C    34.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470315    GT:AD:DP:GQ:PL    1/1:0,2:2:6:65,6,0
20    33517014    rs1801310    A    G    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253382    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
20    33529766    rs2273684    T    G    419.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=38.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216951    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:453,33,0
20    33533736    rs734111    A    C    1674.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=27.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216951    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1708,144,0
20    33565466    .    C    T    79.85    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.96;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=P13S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33565435_33565483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:110,0,27
20    33565665    rs17310782    C    T    514.54    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=30;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=1.8665;MQ=59.23;MQ0=0;MQRankSum=-0.312;QD=17.15;ReadPosRankSum=-1.226;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:14,16:30:99:545,0,376
20    33565755    rs11906160    G    A    1056.95    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.7;DB;DP=84;Dels=0.0;FS=0.885;HRun=0;HaplotypeScore=4.4157;MQ=58.95;MQ0=0;MQRankSum=0.807;QD=12.58;ReadPosRankSum=-0.126;SNPEFF_AMINO_ACID_CHANGE=A25T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33565737_33565899;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:45,39:84:99:1087,0,1160
20    33568343    rs191959576    A    C    1186.80    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.562;QD=14.13;ReadPosRankSum=-1.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:39,45:84:99:1217,0,1179
20    33572941    rs2425007    A    G    461.35    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.106;DB;DP=28;Dels=0.0;FS=8.852;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.875;QD=16.48;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470929    GT:AD:DP:GQ:PL    0/1:13,15:28:99:491,0,358
20    33574022    rs2425008    G    C    138.76    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=11;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=1.9966;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=12.61;ReadPosRankSum=-0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470929    GT:AD:DP:GQ:PL    0/1:5,6:11:99:169,0,134
20    33574493    rs6119558    T    C    79.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470929    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
20    33575347    rs3053708    C    CAT    1749.67    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.838;DB;DP=71;FS=15.89;HRun=0;HaplotypeScore=229.7997;IndelType=I;MQ=59.83;MQ0=0;MQRankSum=-0.734;QD=24.64;ReadPosRankSum=0.019;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:37,34:71:99:1789,0,1436
20    33575778    .    G    T    489.45    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.809;DP=32;Dels=0.0;FS=3.581;HRun=0;HaplotypeScore=1.4942;MQ=60.0;MQ0=0;MQRankSum=0.832;QD=15.3;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:12,19:32:99:519,0,369
20    33576026    rs183060273    C    T    506.06    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=57.88;MQ0=0;MQRankSum=-0.817;QD=12.98;ReadPosRankSum=0.292;SNPEFF_AMINO_ACID_CHANGE=F558;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33575895_33576065;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:19,20:39:99:536,0,457
20    33576095    .    AAGGG    A    310.70    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.98;DP=17;FS=0.0;HRun=0;HaplotypeScore=139.2002;IndelType=D;MQ=53.53;MQ0=0;MQRankSum=-1.524;QD=18.28;ReadPosRankSum=1.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:10,7:17:99:350,0,493
20    33578899    rs2425009    T    C    489.98    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.083;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.249;QD=16.33;ReadPosRankSum=0.166;SNPEFF_AMINO_ACID_CHANGE=L762;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33578807_33578924;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:15,15:30:99:520,0,503
20    33580695    rs185144383    G    C    40.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.21;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:2,2:4:54.21:71,0,54
20    33583114    rs2425014    T    C    135.48    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.794;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9996;MQ=57.05;MQ0=0;MQRankSum=1.562;QD=8.47;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:8,7:16:99:165,0,281
20    33583331    rs2425015    A    G    782.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.02;SNPEFF_AMINO_ACID_CHANGE=K1007E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33583139_33583381;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:815,63,0
20    33587553    rs66553577    TCC    T    73.63    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;FS=0.0;HRun=11;HaplotypeScore=46.6976;IndelType=D;MQ=58.77;MQ0=0;MQRankSum=0.731;QD=7.36;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:4,5:10:28.25:113,0,28
20    33589087    rs114205213    A    C    80.96    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=13;Dels=0.0;FS=2.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=6.23;ReadPosRankSum=-1.157;SNPEFF_AMINO_ACID_CHANGE=K14Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33589048_33589329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000433934    GT:AD:DP:GQ:PL    0/1:9,4:13:99:111,0,292
20    33590096    rs4911167    A    G    253.71    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.95;MQ0=0;MQRankSum=0.4;QD=18.12;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:5,9:14:99:284,0,166
20    33591197    rs11481073    A    AG    518.72    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.041;DB;DP=25;FS=0.0;HRun=3;HaplotypeScore=60.383;IndelType=I;MQ=60.43;MQ0=0;MQRankSum=-2.147;QD=20.75;ReadPosRankSum=0.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:10,15:25:99:558,0,252
20    33592474    rs752449    A    G    88.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
20    33593457    rs3746431    T    C    341.44    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=2.655;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.794;QD=13.66;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:14,11:25:99:371,0,489
20    33593674    rs3746430    T    C    128.70    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.6;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.933;QD=9.19;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:9,5:14:99:159,0,325
20    33594226    rs6060151    G    T    428.94    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.556;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.728;QD=11.0;ReadPosRankSum=-0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262873    GT:AD:DP:GQ:PL    0/1:23,16:39:99:459,0,682
20    33596508    rs184368303    C    T    724.78    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.229;DB;DP=67;Dels=0.0;FS=6.989;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-0.965;QD=10.82;ReadPosRankSum=0.313;SNPEFF_AMINO_ACID_CHANGE=L120;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33596467_33596550;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539834    GT:AD:DP:GQ:PL    0/1:37,30:67:99:755,0,1165
20    33596605    rs115396627    G    A    414.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.268;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=15.35;ReadPosRankSum=-0.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:12,15:27:99:445,0,420
20    33600635    rs187169831    G    C    76.74    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.11;MQ0=0;MQRankSum=0.0;QD=7.67;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:6,4:10:99:107,0,213
20    33632600    rs3803938    C    T    286.46    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.605;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.165;QD=13.02;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:10,12:22:99:316,0,278
20    33637606    rs2281626    T    G    642.44    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.351;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.877;QD=15.3;ReadPosRankSum=-0.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:18,24:42:99:672,0,577
20    33642732    rs4911462    G    T    375.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.771;DB;DP=28;Dels=0.0;FS=7.832;HRun=0;HaplotypeScore=1.6208;MQ=59.17;MQ0=0;MQRankSum=0.17;QD=13.4;ReadPosRankSum=-0.655;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:14,14:28:99:405,0,431
20    33642737    rs4911463    G    A    418.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.986;DB;DP=30;Dels=0.0;FS=4.091;HRun=0;HaplotypeScore=0.8321;MQ=59.23;MQ0=0;MQRankSum=-1.418;QD=13.95;ReadPosRankSum=-0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:15,15:30:99:449,0,434
20    33645273    rs41290906    G    A    621.72    HaplotypeScoreFilter13    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=4.865;DB;DP=54;Dels=0.0;FS=12.855;HRun=0;HaplotypeScore=13.4387;MQ=59.22;MQ0=0;MQRankSum=0.183;QD=11.51;ReadPosRankSum=-1.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252015    GT:AD:DP:GQ:PL    0/1:30,24:54:99:652,0,878
20    33657126    rs1998233    G    A    951.45    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.384;DB;DP=73;Dels=0.0;FS=0.904;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.599;QD=13.03;ReadPosRankSum=0.328;SNPEFF_AMINO_ACID_CHANGE=Y114;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33657099_33657215;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPC4AP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541994    GT:AD:DP:GQ:PL    0/1:39,34:73:99:981,0,1292
20    33703134    rs17092297    G    A    33.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.54;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374491    GT:AD:DP:GQ:PL    0/1:4,2:6:63.23:63,0,135
20    33711638    rs147200845    G    A    92.59    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.567;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6583;MQ=60.0;MQ0=0;MQRankSum=-0.157;QD=4.03;ReadPosRankSum=-1.567;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374491    GT:AD:DP:GQ:PL    0/1:17,6:23:99:123,0,560
20    33713963    rs2295885    T    C    460.51    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=1.336;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.17;MQ0=0;MQRankSum=-2.211;QD=16.45;ReadPosRankSum=-1.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374491    GT:AD:DP:GQ:PL    0/1:13,15:28:99:491,0,459
20    33713975    rs2295886    A    C    490.71    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.021;QD=16.36;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374491    GT:AD:DP:GQ:PL    0/1:14,16:30:99:521,0,476
20    33719400    rs56289894    G    A    1607.80    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.017;DB;DP=127;Dels=0.0;FS=3.615;HRun=1;HaplotypeScore=0.9469;MQ=59.64;MQ0=0;MQRankSum=-0.654;QD=12.66;ReadPosRankSum=-0.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374491    GT:AD:DP:GQ:PL    0/1:72,55:127:99:1638,0,2317
20    33719687    rs1033797    T    C    275.04    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=1.739;QD=14.48;ReadPosRankSum=-0.474;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374491    GT:AD:DP:GQ:PL    0/1:5,13:19:99:305,0,159
20    33734493    rs1415771    G    A    121.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374491    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
20    33762489    rs2069948    C    T    2553.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.7;MQ0=0;QD=33.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540582    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2587,193,0
20    33763951    rs2069952    C    T    1754.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=30.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540582    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1788,132,0
20    33764041    rs186899359    C    T    1033.77    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.26;DB;DP=76;Dels=0.0;FS=4.565;HRun=2;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=1.322;QD=13.6;ReadPosRankSum=-0.016;SNPEFF_AMINO_ACID_CHANGE=F131;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33763971_33764249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PROCR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216968    GT:AD:DP:GQ:PL    0/1:40,36:76:99:1064,0,1191
20    33764632    rs9574    C    G    1010.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=17.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540582    GT:AD:DP:GQ:PL    1/1:0,30:58:81.26:1043,81,0
20    33839939    rs2247828    A    G    424.18    PASS    AB=0.634;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9941;MQ=60.0;MQ0=0;MQRankSum=-0.723;QD=10.35;ReadPosRankSum=0.014;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540582    GT:AD:DP:GQ:PL    0/1:26,15:41:99:454,0,936
20    33855284    rs2425031    T    C    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540582    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
20    33857711    rs2254207    A    C    779.38    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=46;Dels=0.0;FS=1.173;HRun=1;HaplotypeScore=0.9469;MQ=59.5;MQ0=0;MQRankSum=0.698;QD=16.94;ReadPosRankSum=0.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540582    GT:AD:DP:GQ:PL    0/1:20,26:46:99:809,0,644
20    33859244    rs6058219    G    C    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDEM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540582    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
20    33861904    rs639763    C    T    32.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374436    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:63,0,30
20    33867248    rs2297789    A    T    868.68    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=2.925;DB;DP=50;Dels=0.0;FS=3.055;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.513;QD=17.37;ReadPosRankSum=1.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415116    GT:AD:DP:GQ:PL    0/1:23,27:50:99:899,0,724
20    33867697    rs619865    A    G    3084.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456600    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3117,259,0
20    33867924    rs2250205    G    A    1134.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.134;DB;DP=74;Dels=0.0;FS=4.642;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.063;QD=15.33;ReadPosRankSum=-0.592;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=EIF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456600    GT:AD:DP:GQ:PL    0/1:37,37:74:99:1165,0,1185
20    33872311    rs2275275    G    C    667.49    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.925;DB;DP=63;Dels=0.0;FS=3.338;HRun=1;HaplotypeScore=0.9789;MQ=57.77;MQ0=0;MQRankSum=-0.567;QD=10.6;ReadPosRankSum=0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374408    GT:AD:DP:GQ:PL    0/1:39,23:63:99:697,0,1141
20    33874720    rs2425049    C    T    622.45    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.64;DB;DP=32;Dels=0.0;FS=1.562;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-1.383;QD=19.45;ReadPosRankSum=1.301;SNPEFF_AMINO_ACID_CHANGE=R621Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33873534_33875775;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374408    GT:AD:DP:GQ:PL    0/1:12,20:32:99:652,0,310
20    33879478    rs2425050    A    G    142.11    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=15.79;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM83C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374408    GT:AD:DP:GQ:PL    0/1:4,5:9:99:172,0,138
20    33894463    rs878639    A    G    404.84    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.189;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.0;MQ0=0;MQRankSum=-0.655;QD=11.57;ReadPosRankSum=-0.206;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UQCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438533    GT:AD:DP:GQ:PL    0/1:12,23:35:99:435,0,347
20    33961845    rs1540928    C    A    94.25    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=10.47;ReadPosRankSum=-0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UQCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349714    GT:AD:DP:GQ:PL    0/1:5,4:9:99:124,0,183
20    33971914    rs4911494    C    T    364.44    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=2.277;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=0.018;QD=11.04;ReadPosRankSum=-0.783;SNPEFF_AMINO_ACID_CHANGE=R51Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_33971841_33971936;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UQCC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349714    GT:AD:DP:GQ:PL    0/1:19,14:33:99:394,0,460
20    33972792    .    AAAAAG    A    42.77    QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=0.615;DP=28;FS=13.57;HRun=0;HaplotypeScore=258.7112;IndelType=D;MQ=38.8;MQ0=0;MQRankSum=-0.839;QD=1.53;ReadPosRankSum=2.292;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UQCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349714    GT:AD:DP:GQ:PL    0/1:23,5:28:81.80:82,0,347
20    33972899    rs4911179    A    C    36.22    QDFilter2    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.127;DB;DP=30;Dels=0.0;FS=4.465;HRun=0;HaplotypeScore=0.8941;MQ=49.04;MQ0=0;MQRankSum=-0.483;QD=1.21;ReadPosRankSum=-0.229;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UQCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349714    GT:AD:DP:GQ:PL    0/1:21,9:30:66.21:66,0,569
20    33972948    rs4911180    G    A    198.24    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.76;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=-0.036;QD=9.01;ReadPosRankSum=1.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UQCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349714    GT:AD:DP:GQ:PL    0/1:13,8:21:99:228,0,391
20    33982846    rs1204656    G    A    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UQCC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349714    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
20    34022387    rs224331    A    C    252.93    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.607;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.31;MQ0=0;MQRankSum=-0.712;QD=9.37;ReadPosRankSum=1.028;SNPEFF_AMINO_ACID_CHANGE=S276A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_34021145_34022581;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDF5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374369    GT:AD:DP:GQ:PL    0/1:17,10:27:99:283,0,550
20    34078416    .    C    T    89.42    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.636;DP=14;Dels=0.0;FS=5.119;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-0.354;QD=6.39;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP250;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342580    GT:AD:DP:GQ:PL    0/1:10,4:14:99:119,0,336
20    34079200    rs224373    A    G    187.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEP250;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342580    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:220,18,0
20    34144107    rs224420    T    C    252.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERGIC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496172    GT:AD:DP:GQ:PL    1/1:0,9:9:27.05:286,27,0
20    34164422    rs1557202    T    C    2852.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.72;MQ0=0;QD=34.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FER1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262870    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2885,223,0
20    34190699    rs738703    C    T    1150.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FER1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426117    GT:AD:DP:GQ:PL    1/1:0,36:36:90.27:1184,90,0
20    34191629    rs6060499    T    C    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=FER1L4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426117    GT:AD:DP:GQ:PL    1/1:0,4:5:9.03:122,9,0
20    34208516    rs2425067    C    T    391.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPAG4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454819    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:424,33,0
20    34556615    .    G    T    34.69    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.35;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_34556529_34556735;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf152;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349339    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
20    34775551    rs2247688    A    G    637.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373945    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:670,51,0
20    34782000    rs112500577    C    T    67.47    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=9.64;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202028    GT:AD:DP:GQ:PL    0/1:4,3:7:97.47:97,0,148
20    34819919    rs3813918    T    C    471.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EPB41L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000202028    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:505,42,0
20    34828609    rs709050    G    A    420.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320849    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:454,33,0
20    34832601    rs72336018    CCT    C    840.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=71.5418;IndelType=D;MQ=59.42;MQ0=0;QD=40.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320849    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:883,63,0
20    35068018    rs1275396    A    G    187.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339266    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:221,18,0
20    35090820    rs1275391    C    G    283.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7876;MQ=57.66;MQ0=0;QD=28.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLGAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339266    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:317,27,0
20    35467713    rs1146250    G    A    559.93    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.108;DB;DP=59;Dels=0.0;FS=3.875;HRun=0;HaplotypeScore=0.0;MQ=58.42;MQ0=0;MQRankSum=-0.637;QD=9.49;ReadPosRankSum=0.769;SNPEFF_AMINO_ACID_CHANGE=Y273;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_35467620_35467844;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA0889;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000237536    GT:AD:DP:GQ:PL    0/1:36,23:59:99:590,0,1180
20    35506094    rs1291122    T    C    130.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf118;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217320    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
20    35569619    rs6030312    G    T    237.45    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.589;QD=21.59;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMHD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262878    GT:AD:DP:GQ:PL    0/1:2,9:11:50.25:267,0,50
20    35661046    rs6017076    A    T    1272.40    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.642;DB;DP=75;Dels=0.0;FS=16.492;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=0.508;QD=16.97;ReadPosRankSum=0.095;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344359    GT:AD:DP:GQ:PL    0/1:32,43:75:99:1302,0,874
20    35695535    rs11482899    GA    G    151.53    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.545;DB;DP=77;FS=0.0;HRun=16;HaplotypeScore=490.329;IndelType=D;MQ=55.0;MQ0=0;MQRankSum=0.268;QD=1.97;ReadPosRankSum=-0.345;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000527999    GT:AD:DP:GQ:PL    0/1:54,16:77:99:191,0,665
20    35696591    .    TA    T    38.79    PASS    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=1.776;DP=18;FS=2.963;HRun=11;HaplotypeScore=73.3243;IndelType=D;MQ=57.12;MQ0=0;MQRankSum=-0.674;QD=2.15;ReadPosRankSum=-1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344359    GT:AD:DP:GQ:PL    0/1:13,5:18:77.81:78,0,275
20    35731181    rs117314541    G    C    3007.52    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.583;DB;DP=173;DS;Dels=0.0;FS=4.859;HRun=0;HaplotypeScore=2.5243;MQ=59.09;MQ0=0;MQRankSum=0.799;QD=17.28;ReadPosRankSum=2.218;SNPEFF_AMINO_ACID_CHANGE=T1013S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_35731067_35731238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400441    GT:AD:DP:GQ:PL    0/1:80,93:173:99:3038,0,2426
20    35738841    rs1744759    G    C    534.41    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.421;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4538;MQ=58.87;MQ0=0;MQRankSum=0.623;QD=14.44;ReadPosRankSum=0.775;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:18,19:37:99:564,0,647
20    35738892    rs112565168    T    C    110.29    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.308;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.488;QD=6.89;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:10,6:16:99:140,0,367
20    35740794    rs1744760    T    C    1606.73    PASS    AB=0.534;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.121;DB;DP=132;Dels=0.0;FS=16.276;HRun=0;HaplotypeScore=0.9159;MQ=59.83;MQ0=0;MQRankSum=-1.82;QD=12.17;ReadPosRankSum=-1.119;SNPEFF_AMINO_ACID_CHANGE=Q745R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_35740727_35740849;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:70,61:132:99:1637,0,2333
20    35748024    rs1780670    G    A    148.44    HaplotypeScoreFilter13    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.211;DB;DP=22;Dels=0.04;FS=0.0;HRun=0;HaplotypeScore=58.2647;MQ=46.48;MQ0=0;MQRankSum=-1.269;QD=6.45;ReadPosRankSum=-1.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:15,7:22:99:178,0,265
20    35748033    .    G    GA    335.22    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=3.143;DP=32;FS=3.979;HRun=3;HaplotypeScore=356.4923;IndelType=I;MQ=45.26;MQ0=0;MQRankSum=-2.982;QD=10.48;ReadPosRankSum=-1.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:20,12:32:99:374,0,546
20    35748038    rs138010782    AG    A    335.96    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=3.223;DB;DP=32;FS=3.912;HRun=1;HaplotypeScore=352.0261;IndelType=D;MQ=45.26;MQ0=0;MQRankSum=-3.223;QD=10.5;ReadPosRankSum=-0.998;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:17,15:32:99:375,0,724
20    35748416    rs1780671    T    A    207.33    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.933;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-0.222;QD=11.52;ReadPosRankSum=-1.288;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:10,8:18:99:237,0,348
20    35748894    rs1624888    C    G    2582.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2616,190,0
20    35749423    rs113747754    T    C    1824.59    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.831;DB;DP=140;Dels=0.0;FS=0.644;HRun=0;HaplotypeScore=0.9665;MQ=59.67;MQ0=0;MQRankSum=0.429;QD=13.03;ReadPosRankSum=0.772;SNPEFF_AMINO_ACID_CHANGE=T494A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_35749302_35749439;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:77,63:140:99:1855,0,2452
20    35769592    rs1744769    T    C    4245.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.84;MQ0=0;QD=30.11;SNPEFF_AMINO_ACID_CHANGE=A473;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_35769565_35769717;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441008    GT:AD:DP:GQ:PL    1/1:1,140:141:99:4246,340,0
20    35769647    rs1780680    G    T    976.52    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.323;DB;DP=110;Dels=0.0;FS=3.683;HRun=4;HaplotypeScore=2.815;MQ=59.79;MQ0=0;MQRankSum=-0.169;QD=8.88;ReadPosRankSum=-1.48;SNPEFF_AMINO_ACID_CHANGE=T455N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_35769565_35769717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441008    GT:AD:DP:GQ:PL    0/1:65,45:110:99:1007,0,1989
20    35769855    rs77799919    T    C    67.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=8.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:4,4:8:97.29:97,0,106
20    35775976    rs113100009    G    C    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.46;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
20    35776103    rs146194474    G    T    664.51    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=37;Dels=0.0;FS=5.544;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.541;QD=17.96;ReadPosRankSum=-0.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:15,22:37:99:695,0,462
20    35783494    rs1615246    T    C    1905.54    PASS    AB=0.416;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=113;Dels=0.0;FS=3.81;HRun=1;HaplotypeScore=0.8667;MQ=59.8;MQ0=0;MQRankSum=0.261;QD=16.86;ReadPosRankSum=-1.048;SNPEFF_AMINO_ACID_CHANGE=K335R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_35783466_35783570;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441008    GT:AD:DP:GQ:PL    0/1:47,66:113:99:1936,0,1298
20    35786188    rs1780687    A    C    248.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422138    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
20    35787473    rs1744775    A    G    800.31    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.675;DB;DP=70;Dels=0.01;FS=2.554;HRun=2;HaplotypeScore=2.8995;MQ=59.35;MQ0=0;MQRankSum=-1.006;QD=11.27;ReadPosRankSum=0.037;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    0/1:35,35:70:99:830,0,1161
20    35787613    rs10652335    A    AAG    668.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=27.5197;IndelType=I;MQ=60.83;MQ0=0;QD=51.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217333    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:711,39,0
20    35802571    rs112336515    C    G    1097.61    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.948;DB;DP=79;Dels=0.0;FS=2.554;HRun=0;HaplotypeScore=0.8667;MQ=59.53;MQ0=0;MQRankSum=0.211;QD=13.89;ReadPosRankSum=-0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf132;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400441    GT:AD:DP:GQ:PL    0/1:37,42:79:99:1128,0,1173
20    35826683    rs2076399    T    G    83.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.77;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:113,0,30
20    35827028    rs72390346    A    ATT    296.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=10;HaplotypeScore=35.5661;IndelType=I;MQ=60.31;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    1/1:4,6:10:24.08:338,24,0
20    35827682    rs2076398    G    T    594.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:628,48,0
20    35828696    rs6032013    A    G    407.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.83;MQ0=0;QD=31.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:441,39,0
20    35828757    rs11482444    ATT    A    365.49    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=2.352;DB;DP=44;FS=0.0;HRun=13;HaplotypeScore=200.4473;IndelType=D;MQ=58.66;MQ0=0;MQRankSum=1.563;QD=8.31;ReadPosRankSum=0.476;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    0/1:23,19:44:99:405,0,767
20    35835657    rs11698281    C    T    393.26    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.443;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.106;QD=14.57;ReadPosRankSum=0.797;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    0/1:13,14:27:99:423,0,411
20    35835889    rs1079657    A    G    1948.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=34.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462163    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1982,147,0
20    35838372    rs2272950    T    A    526.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462163    GT:AD:DP:GQ:PL    1/1:0,16:16:42.14:560,42,0
20    35838591    rs2050091    T    C    1926.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338768    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1960,159,0
20    35838756    rs3817885    G    A    170.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338768    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
20    35852395    rs2076397    A    C    1292.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.41;MQ0=0;MQRankSum=0.091;QD=33.15;ReadPosRankSum=-0.547;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    1/1:1,38:39:66.03:1326,66,0
20    35852450    rs2076396    G    C    528.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.156;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.735;QD=29.35;ReadPosRankSum=1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    1/1:1,17:18:5.92:559,6,0
20    35858494    rs112634284    G    A    341.65    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.409;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.06;QD=11.02;ReadPosRankSum=0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000237530    GT:AD:DP:GQ:PL    0/1:17,14:31:99:372,0,506
20    35865054    rs4608    C    T    1009.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_AMINO_ACID_CHANGE=L116;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_35864983_35865112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397161    GT:AD:DP:GQ:PL    1/1:0,31:31:81.24:1042,81,0
20    35869619    rs2050093    C    T    384.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397161    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:417,33,0
20    36030939    rs1885257    G    C    453.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=58.63;MQ0=0;QD=26.69;SNPEFF_AMINO_ACID_CHANGE=A406;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_36030838_36030991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358208    GT:AD:DP:GQ:PL    1/1:0,17:17:42.09:487,42,0
20    36031097    rs2145792    A    G    736.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467556    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:770,57,0
20    36305516    rs6020131    T    C    186.73    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.059;DB;DP=18;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=10.37;ReadPosRankSum=-2.011;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP4-640H8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373508    GT:AD:DP:GQ:PL    0/1:7,11:18:99:217,0,197
20    36375071    rs2297154    T    C    1135.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361383    GT:AD:DP:GQ:PL    1/1:0,34:34:90.27:1169,90,0
20    36476200    rs2235463    G    A    419.19    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.553;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.24;QD=14.45;ReadPosRankSum=-0.676;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361383    GT:AD:DP:GQ:PL    0/1:15,14:29:99:449,0,413
20    36476220    rs2294438    T    A    463.97    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=2.45;DB;DP=41;Dels=0.0;FS=3.471;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.232;QD=11.32;ReadPosRankSum=-0.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361383    GT:AD:DP:GQ:PL    0/1:22,19:41:99:494,0,755
20    36488508    rs10579561    TCTCA    T    998.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=116.3314;IndelType=D;MQ=51.96;MQ0=0;QD=49.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361383    GT:AD:DP:GQ:PL    1/1:1,19:20:57.19:1040,57,0
20    36488911    rs1474623    G    T    76.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361383    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
20    36500313    rs717599    C    A    259.41    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.596;DB;DP=29;Dels=0.0;FS=6.903;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.326;QD=8.95;ReadPosRankSum=-0.697;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTNNBL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361383    GT:AD:DP:GQ:PL    0/1:18,11:29:99:289,0,476
20    36685915    rs2256288    T    C    1111.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPRD1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373433    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1145,84,0
20    36790166    rs2076379    A    G    121.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361475    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
20    36793501    rs2067027    A    G    242.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361475    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
20    36841914    rs3746471    G    A    66.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=7.4;ReadPosRankSum=0.248;SNPEFF_AMINO_ACID_CHANGE=R1045W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_36838890_36842145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1755;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279024    GT:AD:DP:GQ:PL    0/1:6,3:9:96.55:97,0,199
20    36867741    rs1205431    A    G    68.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.39;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1755;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279024    GT:AD:DP:GQ:PL    0/1:3,3:6:98.32:98,0,103
20    36867771    rs1205432    C    G    76.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=10.92;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1755;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279024    GT:AD:DP:GQ:PL    0/1:4,3:7:99:106,0,145
20    36936280    rs5741800    G    A    319.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418004    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:353,27,0
20    36937140    rs6069682    T    C    38.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418004    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
20    36938730    rs6024767    T    C    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
20    36939052    rs5743507    G    C    311.07    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.648;DB;DP=19;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.634;QD=16.37;ReadPosRankSum=-0.296;SNPEFF_AMINO_ACID_CHANGE=V182;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_36938893_36939054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    0/1:7,12:19:99:341,0,194
20    36939187    rs1891032    T    C    63.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
20    36940490    rs3746477    T    A    218.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
20    36946848    rs4358188    G    A    2572.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.108;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-1.495;QD=32.15;ReadPosRankSum=0.139;SNPEFF_AMINO_ACID_CHANGE=E216K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_36946815_36946878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    1/1:2,78:80:99:2605,123,0
20    36952961    rs6069741    C    A    34.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489039    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
20    36953097    rs5741806    C    T    236.43    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.563;DB;DP=25;Dels=0.0;FS=7.005;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.897;QD=9.46;ReadPosRankSum=-1.877;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489039    GT:AD:DP:GQ:PL    0/1:13,12:25:99:266,0,478
20    36959318    rs5743533    G    A    472.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:505,39,0
20    36959353    rs5743534    A    G    942.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:975,75,0
20    36959566    rs2425357    A    G    887.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;QD=36.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:920,69,0
20    36962667    rs2275954    A    G    128.02    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=58.2;MQ0=0;MQRankSum=-0.696;QD=9.85;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262865    GT:AD:DP:GQ:PL    0/1:8,5:13:99:158,0,277
20    36965617    rs1131847    A    G    696.32    PASS    AB=0.49;AC=1;AF=0.50;AN=2;BaseQRankSum=1.436;DB;DP=50;Dels=0.0;FS=3.359;HRun=0;HaplotypeScore=1.5449;MQ=59.63;MQ0=0;MQRankSum=0.074;QD=13.93;ReadPosRankSum=-2.075;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489102    GT:AD:DP:GQ:PL    0/1:24,25:50:99:726,0,690
20    36995340    rs1739639    C    T    251.39    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.939;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.102;QD=13.23;ReadPosRankSum=-0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217407    GT:AD:DP:GQ:PL    0/1:10,9:19:99:281,0,307
20    36997632    rs1780627    T    C    2454.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217407    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2488,187,0
20    36999673    rs5741819    A    C    34.91    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.64;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217407    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:65,0,33
20    36999897    rs2232616    C    T    760.11    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.709;DB;DP=44;Dels=0.0;FS=16.474;HRun=4;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.68;QD=17.28;ReadPosRankSum=0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217407    GT:AD:DP:GQ:PL    0/1:18,26:44:99:790,0,509
20    37001631    rs2232617    C    T    68.50    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.415;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.24;QD=4.03;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217407    GT:AD:DP:GQ:PL    0/1:11,6:17:98.49:98,0,424
20    37001761    rs2232618    T    C    257    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.466;DB;DP=34;Dels=0.0;FS=3.712;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.583;QD=7.56;ReadPosRankSum=-0.663;SNPEFF_AMINO_ACID_CHANGE=F436L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_37001716_37001779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217407    GT:AD:DP:GQ:PL    0/1:23,11:34:99:287,0,871
20    37055875    rs707578    T    C    2339.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AL080249.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439912    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2372,190,0
20    37062583    rs788347    T    C    3678.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=31.44;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP4-564F22.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413755    GT:AD:DP:GQ:PL    1/1:1,115:116:99:3678,280,0
20    37125857    rs1303577    C    T    377.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262879    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
20    37187110    rs144540357    A    AT    617.83    PASS    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.298;DB;DP=104;FS=2.239;HRun=12;HaplotypeScore=371.5469;IndelType=I;MQ=59.74;MQ0=0;MQRankSum=0.623;QD=5.94;ReadPosRankSum=-1.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262879    GT:AD:DP:GQ:PL    0/1:69,33:104:99:657,0,798
20    37194254    rs2185594    G    A    898.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RALGAPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262879    GT:AD:DP:GQ:PL    1/1:0,25:25:72.21:932,72,0
20    37257590    rs6070809    C    G    208.48    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=16.04;ReadPosRankSum=-0.101;SNPEFF_AMINO_ACID_CHANGE=G140;SNPEFF_CODON_CHANGE=ggC/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_37257570_37257645;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    0/1:6,7:13:99:238,0,166
20    37263103    .    G    C    32.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.38;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    0/1:4,2:6:62.28:62,0,129
20    37266561    rs220538    T    C    334.31    PASS    AB=0.091;AC=1;AF=0.50;AN=2;BaseQRankSum=0.474;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.474;QD=30.39;ReadPosRankSum=1.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    0/1:1,10:11:8.12:364,0,8
20    37274559    rs11481163    C    CA    347.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=27.2517;IndelType=I;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    1/1:1,10:11:27.09:389,27,0
20    37274861    rs117796    A    G    120.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
20    37277153    rs220527    G    T    243.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:276,21,0
20    37277271    rs220526    C    T    645.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    1/1:0,20:20:51.17:679,51,0
20    37278197    rs220523    A    G    76.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
20    37278612    rs220522    T    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
20    37278946    rs220520    T    C    399.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:432,33,0
20    37279255    rs220519    C    T    1113.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=34.78;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373345    GT:AD:DP:GQ:PL    1/1:0,32:32:87.25:1146,87,0
20    37378508    rs2254245    G    A    91.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243903    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
20    37383517    rs2757520    C    G    398.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243903    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:431,36,0
20    37383640    rs2748663    T    C    1484.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_AMINO_ACID_CHANGE=N272;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_37383600_37383817;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243903    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1518,120,0
20    37383841    rs2757521    C    T    123.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243903    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
20    37394795    rs3215704    AT    A    425.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=2;HaplotypeScore=48.7122;IndelType=D;MQ=60.0;MQ0=0;QD=32.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243903    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:468,36,0
20    37395112    rs2243520    A    G    854.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.33;MQ0=0;MQRankSum=0.743;QD=30.52;ReadPosRankSum=0.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243903    GT:AD:DP:GQ:PL    1/1:1,27:28:34.60:888,35,0
20    37396120    rs2245231    A    G    2182.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.61;MQ0=0;QD=32.57;SNPEFF_AMINO_ACID_CHANGE=I483V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_37396107_37396239;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243903    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2215,175,0
20    37396262    rs2245237    A    G    1110.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACTR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243903    GT:AD:DP:GQ:PL    1/1:0,32:33:87.25:1143,87,0
20    37524432    rs6028184    C    T    83.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=20.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463749    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
20    37524459    rs13042445    T    C    82.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R16B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463749    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:114,9,0
20    37643740    rs45526137    A    T    156.41    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=26.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHX35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252011    GT:AD:DP:GQ:PL    0/1:1,5:6:20.52:186,0,21
20    39690342    rs1997833    T    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361337    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:73,0,34
20    39721373    rs2076574    A    G    561.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.778;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;MQRankSum=-0.418;QD=12.47;ReadPosRankSum=-0.131;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361337    GT:AD:DP:GQ:PL    0/1:27,18:45:99:591,0,891
20    39726776    rs78221809    T    C    510.30    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.698;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.073;QD=13.43;ReadPosRankSum=-0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361337    GT:AD:DP:GQ:PL    0/1:20,18:38:99:540,0,609
20    39742944    rs1980456    T    C    148.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=14.81;ReadPosRankSum=1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361337    GT:AD:DP:GQ:PL    0/1:5,5:10:99:178,0,180
20    39744810    rs3092210    C    A    518.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361337    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:552,42,0
20    39788855    rs2076148    A    G    322.56    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=20.16;ReadPosRankSum=0.705;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490253    GT:AD:DP:GQ:PL    0/1:6,10:16:99:353,0,200
20    39791741    rs34454281    C    T    290.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DB;DP=22;Dels=0.0;FS=1.603;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.088;QD=13.22;ReadPosRankSum=0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483646    GT:AD:DP:GQ:PL    0/1:12,10:22:99:321,0,423
20    39794489    rs6124323    G    A    480.96    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=1.66;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.606;QD=18.5;ReadPosRankSum=0.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470528    GT:AD:DP:GQ:PL    0/1:10,16:26:99:511,0,253
20    39797465    rs753381    T    C    513.77    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.926;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.995;QD=17.13;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=I813T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_39797407_39797510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244007    GT:AD:DP:GQ:PL    0/1:12,18:30:99:544,0,391
20    39797646    rs909708    C    T    210.11    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=13;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.9989;MQ=58.2;MQ0=0;MQRankSum=-0.929;QD=16.16;ReadPosRankSum=-0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465571    GT:AD:DP:GQ:PL    0/1:5,8:13:99:240,0,118
20    39830122    rs2235367    A    G    710.82    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=2.105;DB;DP=43;Dels=0.0;FS=2.462;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-0.628;QD=16.53;ReadPosRankSum=-0.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZHX3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373261    GT:AD:DP:GQ:PL    0/1:18,25:43:99:741,0,570
20    39833465    .    T    C    609.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.711;DP=48;Dels=0.0;FS=8.694;HRun=1;HaplotypeScore=0.9999;MQ=59.52;MQ0=0;MQRankSum=-0.299;QD=12.69;ReadPosRankSum=-1.495;SNPEFF_AMINO_ACID_CHANGE=E31G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_39830697_39833556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZHX3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000309060    GT:AD:DP:GQ:PL    0/1:24,24:48:99:639,0,810
20    39990770    rs150314346    C    T    354.72    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.349;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.227;QD=7.55;ReadPosRankSum=-0.871;SNPEFF_AMINO_ACID_CHANGE=R480H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_39988606_39991694;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMILIN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332312    GT:AD:DP:GQ:PL    0/1:32,14:47:99:385,0,955
20    40033746    rs143295154    G    C    729.39    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.791;DB;DP=62;Dels=0.0;FS=3.469;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.653;QD=11.76;ReadPosRankSum=-0.185;SNPEFF_AMINO_ACID_CHANGE=T2545;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_40030741_40034129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373233    GT:AD:DP:GQ:PL    0/1:35,27:62:99:759,0,1087
20    40116207    rs3092194    G    A    305.66    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=3.063;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.951;QD=14.56;ReadPosRankSum=0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHD6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309279    GT:AD:DP:GQ:PL    0/1:11,10:21:99:336,0,331
20    40714524    rs722898    C    G    381.59    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.867;DB;DP=35;Dels=0.0;FS=8.911;HRun=1;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=0.728;QD=10.9;ReadPosRankSum=-0.243;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    0/1:20,15:35:99:412,0,553
20    40714540    rs1569548    G    C    287.28    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.965;DB;DP=33;Dels=0.0;FS=6.397;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=1.449;QD=8.71;ReadPosRankSum=-0.496;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    0/1:19,14:33:99:317,0,421
20    40979160    rs2071854    T    C    460.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9382;MQ=58.55;MQ0=0;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:494,39,0
20    40980495    rs3746536    A    C    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
20    40981002    rs6102794    C    A    419.96    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.261;QD=19.09;ReadPosRankSum=0.709;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    0/1:7,15:22:99:450,0,222
20    41076751    rs2076082    T    A    1021.04    PASS    AB=0.392;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.978;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;MQRankSum=0.531;QD=20.02;ReadPosRankSum=-0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    0/1:20,31:51:99:1051,0,671
20    41100774    rs760704    G    A    120.09    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=13.34;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    0/1:3,6:9:94.62:150,0,95
20    41101274    rs6065487    C    A    148.49    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=24.75;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    0/1:1,5:6:21.95:178,0,22
20    41306488    rs111229158    G    GAA    1615.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=11;HaplotypeScore=214.6811;IndelType=I;MQ=58.07;MQ0=1;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    1/1:10,37:51:99:1658,124,0
20    41400229    rs6030462    G    A    985.82    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.313;DB;DP=63;Dels=0.0;FS=1.724;HRun=1;HaplotypeScore=0.6651;MQ=59.63;MQ0=0;MQRankSum=-0.364;QD=15.65;ReadPosRankSum=0.282;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356100    GT:AD:DP:GQ:PL    0/1:32,31:63:99:1016,0,1020
20    42089511    rs2235611    T    C    1458.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.5784;MQ=57.99;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=P281;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42089343_42092245;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRSF6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244020    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1492,117,0
20    42157237    rs2071972    C    T    265.82    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=20.45;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373134    GT:AD:DP:GQ:PL    0/1:5,8:13:99:296,0,127
20    42164722    rs3746528    T    C    401.71    PASS    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=18.26;ReadPosRankSum=0.187;SNPEFF_AMINO_ACID_CHANGE=R552;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42164722_42164934;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373134    GT:AD:DP:GQ:PL    0/1:7,15:22:99:432,0,213
20    42169205    rs3746526    G    A    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483547    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
20    42176606    rs12479637    T    C    169.14    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=11;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=15.38;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422861    GT:AD:DP:GQ:PL    0/1:4,7:11:99:199,0,131
20    42195863    rs4812721    G    C    37.42    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.48;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341458    GT:AD:DP:GQ:PL    0/1:3,2:5:67.41:67,0,107
20    42198173    rs3752560    G    A    78.83    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.665;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.525;QD=3.43;ReadPosRankSum=-0.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341458    GT:AD:DP:GQ:PL    0/1:17,6:23:99:109,0,570
20    42199704    rs66990609    GGTGT    G    324.58    PASS    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=56;FS=0.0;HRun=0;HaplotypeScore=461.1751;IndelType=D;MQ=50.74;MQ0=0;MQRankSum=1.435;QD=5.8;ReadPosRankSum=3.308;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485914    GT:AD:DP:GQ:PL    0/1:43,8:56:99:364,0,545
20    42199925    rs3127060    G    A    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485914    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
20    42203442    rs916409    G    A    81.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.4;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412111    GT:AD:DP:GQ:PL    0/1:1,3:4:24.09:112,0,24
20    42205061    rs763227    G    A    462.43    PASS    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=-1.54;QD=24.34;ReadPosRankSum=-0.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412111    GT:AD:DP:GQ:PL    0/1:5,14:19:99:492,0,111
20    42208522    rs2301483    T    G    734.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341458    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:767,60,0
20    42208966    rs2301481    T    G    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
20    42225114    rs2664519    G    A    523.98    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.964;DB;DP=67;Dels=0.0;FS=2.198;HRun=3;HaplotypeScore=0.8321;MQ=59.66;MQ0=0;MQRankSum=0.492;QD=7.82;ReadPosRankSum=-0.52;SNPEFF_AMINO_ACID_CHANGE=V53;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42225075_42225162;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    0/1:42,25:67:99:554,0,1280
20    42242700    rs4473450    C    T    483.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.556;DB;DP=28;Dels=0.0;FS=4.15;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=17.27;ReadPosRankSum=0.553;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    0/1:12,16:28:99:514,0,325
20    42249398    rs1555348    C    T    412.75    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.798;DB;DP=19;Dels=0.05;FS=0.0;HRun=3;HaplotypeScore=1.933;MQ=60.54;MQ0=0;MQRankSum=1.359;QD=20.64;ReadPosRankSum=0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    0/1:6,13:19:99:443,0,196
20    42249479    rs11483801    C    CT    536.87    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.893;DB;DP=50;FS=5.423;HRun=10;HaplotypeScore=168.7187;IndelType=I;MQ=59.97;MQ0=0;MQRankSum=-0.705;QD=10.74;ReadPosRankSum=-0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    0/1:27,23:50:99:576,0,386
20    42252325    rs4810390    G    T    83.61    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.9;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460014    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:114,0,28
20    42264502    rs6031007    G    A    288.86    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.531;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-1.184;QD=15.2;ReadPosRankSum=0.857;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    0/1:10,9:19:99:319,0,308
20    42264726    rs2273523    T    C    198.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.267;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=1.325;QD=11.04;ReadPosRankSum=-2.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    0/1:9,9:18:99:229,0,276
20    42265700    rs6065638    T    C    227.90    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.482;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.27;QD=14.24;ReadPosRankSum=-2.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    0/1:7,9:16:99:258,0,246
20    42265966    rs6031008    G    A    359.36    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.304;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8663;MQ=59.71;MQ0=0;MQRankSum=-1.975;QD=17.97;ReadPosRankSum=0.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468420    GT:AD:DP:GQ:PL    0/1:9,11:20:99:389,0,308
20    42271374    rs426197    T    G    148.19    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=18.52;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    0/1:3,5:8:99:178,0,99
20    42275499    rs393115    G    T    1161.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373030    GT:AD:DP:GQ:PL    1/1:0,29:29:87.29:1194,87,0
20    42302201    rs826949    C    T    163.80    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.66;QD=12.6;ReadPosRankSum=-2.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217026    GT:AD:DP:GQ:PL    0/1:7,6:13:99:194,0,204
20    42302371    rs826950    C    T    872.91    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=2.005;DB;DP=51;Dels=0.0;FS=2.508;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=17.12;ReadPosRankSum=-0.275;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217026    GT:AD:DP:GQ:PL    0/1:22,29:51:99:903,0,546
20    42310509    rs442143    T    C    167.52    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.002;DB;DP=18;Dels=0.0;FS=3.274;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.353;QD=9.31;ReadPosRankSum=1.236;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217026    GT:AD:DP:GQ:PL    0/1:9,9:18:99:198,0,314
20    42311222    rs439730    A    C    276.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217026    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:310,24,0
20    42320881    rs35205746    C    T    850.07    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.951;DB;DP=62;Dels=0.0;FS=5.212;HRun=1;HaplotypeScore=0.9734;MQ=59.25;MQ0=0;MQRankSum=-0.19;QD=13.71;ReadPosRankSum=-1.146;SNPEFF_AMINO_ACID_CHANGE=D171;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42320797_42320959;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396863    GT:AD:DP:GQ:PL    0/1:30,31:62:99:880,0,736
20    42328639    rs285162    T    C    1823.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.323;DB;DP=60;Dels=0.0;FS=5.873;HRun=3;HaplotypeScore=0.9998;MQ=59.23;MQ0=0;MQRankSum=-1.204;QD=30.39;ReadPosRankSum=-0.264;SNPEFF_AMINO_ACID_CHANGE=P278;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42328397_42328684;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396863    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1856,113,0
20    42328749    rs285163    A    G    1314.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217026    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1348,102,0
20    42330940    rs68155961    T    C    36.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7338;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=6.03;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217026    GT:AD:DP:GQ:PL    0/1:3,3:6:66.19:66,0,100
20    42331457    rs2070235    A    G    449.43    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.844;DB;DP=36;Dels=0.0;FS=7.396;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.745;QD=12.48;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=S403G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42331130_42331543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396863    GT:AD:DP:GQ:PL    0/1:19,17:36:99:479,0,648
20    42343821    rs11556379    C    G    3269.40    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.478;DB;DP=241;Dels=0.0;FS=2.913;HRun=0;HaplotypeScore=0.9469;MQ=59.52;MQ0=0;MQRankSum=-1.223;QD=13.57;ReadPosRankSum=-1.505;SNPEFF_AMINO_ACID_CHANGE=I600M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42343774_42343923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYBL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396863    GT:AD:DP:GQ:PL    0/1:124,116:241:99:3269,0,3828
20    42574362    rs11700304    C    T    322.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_42574345_42574678;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358131    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
20    42574442    rs4812769    T    C    947.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341197    GT:AD:DP:GQ:PL    1/1:0,30:30:72.22:981,72,0
20    42693650    rs2143495    A    G    55.84    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=6.98;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341197    GT:AD:DP:GQ:PL    0/1:5,3:8:85.83:86,0,183
20    42694558    .    C    CCCG    424.85    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.442;DP=25;FS=0.0;HRun=0;HaplotypeScore=159.9916;IndelType=I;MQ=56.2;MQ0=0;MQRankSum=-0.177;QD=16.99;ReadPosRankSum=0.177;SNPEFF_AMINO_ACID_CHANGE=-268P;SNPEFF_CODON_CHANGE=-/CCG;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_20_42694352_42694747;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435864    GT:AD:DP:GQ:PL    0/1:19,6:25:99:464,0,343
20    42697255    rs8125734    C    T    30.21    QDFilter2    AB=0.846;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.391;DB;DP=26;Dels=0.0;FS=5.849;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.959;QD=1.16;ReadPosRankSum=-0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341197    GT:AD:DP:GQ:PL    0/1:22,4:26:60.20:60,0,578
20    42743454    rs6093935    A    G    194.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=12;Dels=0.0;FS=2.616;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.536;QD=16.19;ReadPosRankSum=-0.289;SNPEFF_AMINO_ACID_CHANGE=F691;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42743422_42743516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372980    GT:AD:DP:GQ:PL    0/1:4,8:12:90.79:224,0,91
20    42744587    rs74352869    G    C    30.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.11;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=P576;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42744305_42745026;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372980    GT:AD:DP:GQ:PL    0/1:3,2:5:60.55:61,0,96
20    42806429    rs2064381    A    T    144.04    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=20.58;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372980    GT:AD:DP:GQ:PL    0/1:2,5:7:56.08:174,0,56
20    42814837    rs6031441    A    G    86.06    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=12;Dels=0.0;FS=4.393;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.0;QD=7.17;ReadPosRankSum=0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342272    GT:AD:DP:GQ:PL    0/1:7,5:12:99:116,0,251
20    42814931    rs6031442    T    C    1240.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3639;MQ=59.32;MQ0=0;QD=36.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342272    GT:AD:DP:GQ:PL    1/1:0,34:34:99:1273,99,0
20    42815190    rs1883790    G    A    1111.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.68;SNPEFF_AMINO_ACID_CHANGE=Y52;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42814967_42815733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JPH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342272    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1144,87,0
20    42891934    rs2425632    C    T    2404.43    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=7.215;DB;DP=190;DS;Dels=0.0;FS=1.28;HRun=0;HaplotypeScore=2.3999;MQ=59.88;MQ0=0;MQRankSum=-0.352;QD=12.65;ReadPosRankSum=-1.357;SNPEFF_AMINO_ACID_CHANGE=S12;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42891870_42891967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDAP1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000537864    GT:AD:DP:GQ:PL    0/1:104,86:190:99:2434,0,2675
20    42939750    rs6073401    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_AMINO_ACID_CHANGE=G13;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_42939616_42939809;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FITM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396825    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
20    43034660    rs736824    T    C    1150.95    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=2.135;DB;DP=102;Dels=0.0;FS=0.834;HRun=0;HaplotypeScore=1.6208;MQ=59.77;MQ0=0;MQRankSum=0.431;QD=11.28;ReadPosRankSum=-0.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316099    GT:AD:DP:GQ:PL    0/1:63,39:102:99:1181,0,1880
20    43042950    rs11574739    A    C    38.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316099    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:69,0,32
20    43043051    rs3212194    C    G    109.87    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.069;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.048;QD=6.46;ReadPosRankSum=-1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316099    GT:AD:DP:GQ:PL    0/1:9,8:17:99:140,0,326
20    43043095    rs3212195    G    A    464.62    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=23;Dels=0.0;FS=4.304;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=20.2;ReadPosRankSum=0.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316099    GT:AD:DP:GQ:PL    0/1:8,15:23:99:495,0,214
20    43047293    rs6103731    A    G    174.86    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=17.49;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316099    GT:AD:DP:GQ:PL    0/1:4,6:10:99:205,0,135
20    43048685    rs3212201    A    G    75.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.61;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316099    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,106
20    43052570    rs2273618    T    C    64.73    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=7.19;ReadPosRankSum=-1.422;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316099    GT:AD:DP:GQ:PL    0/1:6,3:9:94.73:95,0,199
20    43058018    rs3746574    T    C    346.88    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.963;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.84;MQ0=0;MQRankSum=0.076;QD=17.34;ReadPosRankSum=-0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443598    GT:AD:DP:GQ:PL    0/1:9,11:20:99:377,0,298
20    43058096    rs3746575    C    G    875.49    PASS    AB=0.487;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=76;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8941;MQ=59.7;MQ0=0;MQRankSum=1.238;QD=11.52;ReadPosRankSum=-0.384;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HNF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443598    GT:AD:DP:GQ:PL    0/1:37,39:76:99:905,0,1092
20    43132789    rs933249    G    A    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255175    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
20    43140118    .    ATGAT    A    288.98    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DP=7;FS=0.0;HRun=0;HaplotypeScore=34.9382;IndelType=D;MQ=35.14;MQ0=0;MQRankSum=-0.742;QD=41.28;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERINC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468234    GT:AD:DP:GQ:PL    0/1:1,6:7:60.59:328,0,61
20    43254490    rs244074    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000536076    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    43264927    rs394105    C    T    285.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_AMINO_ACID_CHANGE=V12;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43264868_43264929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372874    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:319,24,0
20    43288605    rs2148040    T    C    35.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-445H22.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
20    43291801    rs6103811    C    A    45.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=RP11-445H22.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255183    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
20    43343930    rs1980804    T    G    164.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=23.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372868    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:197,18,0
20    43353709    rs6094028    G    C    109.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497421    GT:AD:DP:GQ:PL    1/1:0,6:6:12.02:142,12,0
20    43356156    rs1061098    C    T    510.32    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.506;DB;DP=48;Dels=0.0;FS=1.143;HRun=0;HaplotypeScore=0.8667;MQ=59.52;MQ0=0;MQRankSum=1.623;QD=10.63;ReadPosRankSum=0.885;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465000    GT:AD:DP:GQ:PL    0/1:29,19:48:99:540,0,925
20    43356518    rs1536229    A    G    1721.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WISP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000190983    GT:AD:DP:GQ:PL    1/1:0,56:57:99:1755,135,0
20    43374839    rs76926487    GC    G    230.08    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=16;FS=0.0;HRun=2;HaplotypeScore=68.8114;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.193;QD=14.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372861    GT:AD:DP:GQ:PL    0/1:8,8:16:99:269,0,217
20    43378770    rs1111032    A    G    315.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_AMINO_ACID_CHANGE=E95G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43378770_43379675;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372861    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:348,27,0
20    43379264    rs6073538    A    C    351.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=15.27;SNPEFF_AMINO_ACID_CHANGE=T260P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43378770_43379675;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNK15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372861    GT:AD:DP:GQ:PL    1/1:0,23:23:33.06:384,33,0
20    43530234    rs4931    A    C    896.17    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=1.251;DB;DP=76;Dels=0.0;FS=3.264;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=2.666;QD=11.79;ReadPosRankSum=0.016;SNPEFF_AMINO_ACID_CHANGE=R20;SNPEFF_CODON_CHANGE=cgA/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43530172_43530474;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000353703    GT:AD:DP:GQ:PL    0/1:41,35:76:99:926,0,1322
20    43534903    rs16989481    G    A    58.15    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.978;QD=5.29;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428262    GT:AD:DP:GQ:PL    0/1:8,3:11:88.14:88,0,285
20    43535101    rs6876    T    C    229.17    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.606;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5317;MQ=51.96;MQ0=0;MQRankSum=1.435;QD=8.49;ReadPosRankSum=0.088;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428262    GT:AD:DP:GQ:PL    0/1:16,11:27:99:259,0,427
20    43538733    rs2072727    T    C    80.97    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=20.24;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353703    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:111,0,30
20    43541183    rs2235172    G    C    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000353703    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:72,0,32
20    43547537    rs2072728    A    G    402.50    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.525;DB;DP=38;Dels=0.0;FS=5.153;HRun=0;HaplotypeScore=0.9998;MQ=58.78;MQ0=0;MQRankSum=-0.347;QD=10.59;ReadPosRankSum=-1.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217073    GT:AD:DP:GQ:PL    0/1:18,20:38:99:432,0,556
20    43550045    rs2425686    A    T    216.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.154;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.027;QD=15.47;ReadPosRankSum=0.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217073    GT:AD:DP:GQ:PL    0/1:7,7:14:99:247,0,243
20    43558909    rs1998033    T    C    31.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=7.82;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217073    GT:AD:DP:GQ:PL    0/1:2,2:4:61.27:61,0,69
20    43567442    rs6073572    T    C    30.66    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.13;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217073    GT:AD:DP:GQ:PL    0/1:3,2:5:60.65:61,0,88
20    43653713    rs33963346    C    T    586.68    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.503;DB;DP=40;Dels=0.0;FS=1.189;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=1.373;QD=14.67;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=P361L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43653614_43653771;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000499879    GT:AD:DP:GQ:PL    0/1:18,22:40:99:617,0,528
20    43752168    rs6104017    T    A    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372785    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    43752737    rs34841068    G    C    339    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.245;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.475;QD=13.56;ReadPosRankSum=-0.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372785    GT:AD:DP:GQ:PL    0/1:12,13:25:99:369,0,389
20    43803725    rs1983649    T    A    409.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243924    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:442,33,0
20    43804314    rs6032040    A    T    302.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243924    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:336,24,0
20    43926536    rs2227274    G    T    518.56    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.01;DB;DP=38;Dels=0.0;FS=1.281;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=-0.745;QD=13.65;ReadPosRankSum=-1.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255132    GT:AD:DP:GQ:PL    0/1:16,22:38:99:549,0,470
20    43926573    rs2227275    C    T    482.24    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.063;DB;DP=36;Dels=0.0;FS=3.164;HRun=1;HaplotypeScore=2.52;MQ=59.36;MQ0=0;MQRankSum=-1.394;QD=13.4;ReadPosRankSum=0.063;SNPEFF_AMINO_ACID_CHANGE=G373S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43926558_43926710;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372751    GT:AD:DP:GQ:PL    0/1:17,19:36:99:512,0,590
20    43929473    rs2072789    A    G    539.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.239;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.626;QD=17.99;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255132    GT:AD:DP:GQ:PL    0/1:10,20:30:99:570,0,291
20    43929659    rs2076023    G    A    398.47    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.196;DB;DP=20;Dels=0.0;FS=7.06;HRun=1;HaplotypeScore=1.9787;MQ=60.0;MQ0=0;MQRankSum=-0.964;QD=19.92;ReadPosRankSum=-0.424;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255132    GT:AD:DP:GQ:PL    0/1:8,12:20:99:428,0,254
20    43933021    rs2072788    G    T    253.03    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.152;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.76;QD=12.65;ReadPosRankSum=1.14;SNPEFF_AMINO_ACID_CHANGE=R164S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43932868_43933437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000255132    GT:AD:DP:GQ:PL    0/1:11,9:20:99:283,0,359
20    43933163    rs2233094    T    C    75.46    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.09;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=A116;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43932868_43933437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MATN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255132    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:105,0,67
20    43941226    rs2072793    G    A    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBPJL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343694    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
20    43964407    rs2072791    G    C    1201.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372733    GT:AD:DP:GQ:PL    1/1:0,36:36:90.30:1234,90,0
20    43964707    rs3830725    C    CT    273.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=1;HaplotypeScore=18.1934;IndelType=I;MQ=60.0;MQ0=0;QD=39.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372733    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:315,21,0
20    43976991    rs4458268    A    G    122.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.63;SNPEFF_AMINO_ACID_CHANGE=F12L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_43976965_43977064;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SDC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372733    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
20    43995410    rs6032142    C    T    3848.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.78;MQ0=0;QD=36.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461890    GT:AD:DP:GQ:PL    1/1:0,105:105:99:3848,289,0
20    43995880    rs2245717    T    G    492.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372727    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:525,39,0
20    43996012    rs2664543    G    T    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372727    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
20    44002665    rs2231626    C    G    1475.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243918    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1508,111,0
20    44004155    rs10546815    CATT    C    3085.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.0;HRun=0;HaplotypeScore=310.2829;IndelType=D;MQ=56.07;MQ0=0;QD=44.72;SNPEFF_AMINO_ACID_CHANGE=N81-;SNPEFF_CODON_CHANGE=aat/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_20_44003679_44004192;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53TG5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537995    GT:AD:DP:GQ:PL    1/1:3,66:69:99:3128,193,0
20    44004296    .    A    G    167.82    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.629;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.543;QD=7.99;ReadPosRankSum=1.412;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TP53TG5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488588    GT:AD:DP:GQ:PL    0/1:13,8:21:99:198,0,411
20    44006078    rs2231614    C    G    1485.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426004    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1519,123,0
20    44048065    rs3830724    C    CG    1157.70    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.784;DB;DP=81;FS=0.963;HRun=6;HaplotypeScore=243.4278;IndelType=I;MQ=60.1;MQ0=0;MQRankSum=-1.235;QD=14.29;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279035    GT:AD:DP:GQ:PL    0/1:42,39:81:99:1197,0,816
20    44050342    rs4812899    T    C    125.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455050    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
20    44052992    rs13217    G    A    738.45    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=0.989;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=-0.65;QD=14.48;ReadPosRankSum=0.914;SNPEFF_AMINO_ACID_CHANGE=T195;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44052856_44053021;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545755    GT:AD:DP:GQ:PL    0/1:26,25:51:99:768,0,676
20    44053069    rs2741566    T    C    1520.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455050    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1553,117,0
20    44054349    rs707577    T    C    695.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=Y278;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44054214_44054549;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545755    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:728,57,0
20    44108475    rs41280266    C    T    1546.83    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.633;DB;DP=94;Dels=0.0;FS=6.623;HRun=1;HaplotypeScore=1.8665;MQ=59.75;MQ0=0;MQRankSum=1.446;QD=16.46;ReadPosRankSum=0.076;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_44108079_44108734;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342873    GT:AD:DP:GQ:PL    0/1:45,49:94:99:1577,0,1437
20    44163825    rs41304411    G    T    1702.31    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.384;DB;DP=99;Dels=0.0;FS=2.662;HRun=0;HaplotypeScore=1.8773;MQ=59.77;MQ0=0;MQRankSum=0.907;QD=17.2;ReadPosRankSum=-1.541;SNPEFF_AMINO_ACID_CHANGE=I122;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44163796_44163968;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372665    GT:AD:DP:GQ:PL    0/1:41,58:99:99:1732,0,1240
20    44163988    rs6032274    T    C    36.34    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=5.19;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINLW1-WFDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504988    GT:AD:DP:GQ:PL    0/1:4,3:7:66.33:66,0,136
20    44170712    rs11594    C    A    461.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINLW1-WFDC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000504988    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:495,36,0
20    44174423    rs765156    G    A    954.76    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=0.777;DB;DP=58;Dels=0.0;FS=4.97;HRun=0;HaplotypeScore=0.8667;MQ=59.28;MQ0=0;MQRankSum=1.081;QD=16.46;ReadPosRankSum=-0.024;SNPEFF_AMINO_ACID_CHANGE=T10;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44174278_44175016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINLW1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336443    GT:AD:DP:GQ:PL    0/1:26,32:58:99:985,0,809
20    44176142    rs2227290    G    T    155.92    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=22.27;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289953    GT:AD:DP:GQ:PL    0/1:2,5:7:23.17:186,0,23
20    44236987    rs1487320    C    G    72.51    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.988;QD=10.36;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326000    GT:AD:DP:GQ:PL    0/1:4,3:7:84.36:102,0,84
20    44238741    rs2245898    T    G    471.28    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=1.142;DB;DP=37;Dels=0.0;FS=1.33;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.281;QD=12.74;ReadPosRankSum=0.844;SNPEFF_AMINO_ACID_CHANGE=N27T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44238730_44238878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326000    GT:AD:DP:GQ:PL    0/1:21,16:37:99:501,0,563
20    44259490    rs1487323    G    A    299.39    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.202;DB;DP=24;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.811;QD=12.47;ReadPosRankSum=-0.579;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372643    GT:AD:DP:GQ:PL    0/1:13,11:24:99:329,0,414
20    44259549    rs2272961    G    A    623.32    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.285;DB;DP=41;Dels=0.0;FS=4.756;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=0.014;QD=15.2;ReadPosRankSum=-0.204;SNPEFF_AMINO_ACID_CHANGE=Q44;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44259509_44259835;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC10A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372643    GT:AD:DP:GQ:PL    0/1:19,22:41:99:653,0,562
20    44259673    rs1487322    G    T    200.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.62;DB;DP=27;Dels=0.0;FS=3.738;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.9;QD=7.44;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326000    GT:AD:DP:GQ:PL    0/1:18,9:27:99:231,0,542
20    44279034    rs6065851    C    T    263.09    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.007;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.0;QD=17.54;ReadPosRankSum=1.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324384    GT:AD:DP:GQ:PL    0/1:7,8:15:99:293,0,203
20    44313401    rs2072974    G    A    596.84    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=4.253;DB;DP=44;Dels=0.0;FS=1.561;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.211;QD=13.56;ReadPosRankSum=1.128;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330523    GT:AD:DP:GQ:PL    0/1:23,21:44:99:627,0,625
20    44314609    rs232729    A    G    789.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.58;MQ0=0;QD=28.2;SNPEFF_AMINO_ACID_CHANGE=L8P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44314541_44314695;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC10B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330523    GT:AD:DP:GQ:PL    1/1:0,28:28:63.18:823,63,0
20    44333052    rs980984    A    G    314.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.025;DB;DP=28;Dels=0.0;FS=7.371;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.567;QD=11.22;ReadPosRankSum=-0.419;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330523    GT:AD:DP:GQ:PL    0/1:16,12:28:99:344,0,430
20    44333326    rs72253595    CT    C    107.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=22;FS=2.307;HRun=14;HaplotypeScore=176.8016;IndelType=D;MQ=54.81;MQ0=0;MQRankSum=-0.227;QD=4.9;ReadPosRankSum=-0.113;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC10B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330523    GT:AD:DP:GQ:PL    0/1:11,9:22:93.24:147,0,93
20    44334394    rs232291    A    C    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.0;QD=9.96;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305479    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,70
20    44334588    rs232290    C    G    624.28    PASS    AB=0.31;AC=1;AF=0.50;AN=2;BaseQRankSum=1.249;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.014;QD=20.81;ReadPosRankSum=-1.768;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WFDC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305479    GT:AD:DP:GQ:PL    0/1:9,20:30:99:654,0,264
20    44350931    rs232262    C    G    1657.20    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.47;DB;DP=84;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=0.118;QD=19.73;ReadPosRankSum=0.916;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279058    GT:AD:DP:GQ:PL    0/1:35,49:84:99:1687,0,1147
20    44352620    rs6017667    G    A    813.94    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=3.626;DB;DP=52;Dels=0.0;FS=7.66;HRun=0;HaplotypeScore=3.3458;MQ=59.56;MQ0=0;MQRankSum=1.319;QD=15.65;ReadPosRankSum=0.073;SNPEFF_AMINO_ACID_CHANGE=G73S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44352519_44352696;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000279058    GT:AD:DP:GQ:PL    0/1:25,27:52:99:844,0,775
20    44352740    rs1487317    G    A    283.14    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.491;DB;DP=24;Dels=0.0;FS=3.388;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.058;QD=11.8;ReadPosRankSum=-0.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279058    GT:AD:DP:GQ:PL    0/1:13,11:24:99:313,0,480
20    44354087    rs6032473    G    C    177.96    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.135;QD=14.83;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279058    GT:AD:DP:GQ:PL    0/1:5,7:12:99:208,0,166
20    44354372    rs6032474    G    A    593.50    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.735;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=14.84;ReadPosRankSum=-0.379;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279058    GT:AD:DP:GQ:PL    0/1:19,21:40:99:623,0,615
20    44354387    rs232259    A    C    458.55    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=0.807;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.764;QD=15.81;ReadPosRankSum=0.196;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPINT4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279058    GT:AD:DP:GQ:PL    0/1:15,14:29:99:489,0,488
20    44378577    rs380421    T    C    1271.90    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.356;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.368;QD=12.23;ReadPosRankSum=-0.563;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481847    GT:AD:DP:GQ:PL    0/1:54,50:104:99:1302,0,1715
20    44402869    rs2664529    C    T    47.96    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.566;QD=4.36;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462017    GT:AD:DP:GQ:PL    0/1:8,3:11:77.95:78,0,297
20    44403710    rs2064504    A    G    141.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.336;QD=14.13;ReadPosRankSum=1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467679    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,166
20    44416336    .    G    T    173.27    HaplotypeScoreFilter13    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.479;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=14.9035;MQ=42.13;MQ0=0;MQRankSum=-2.219;QD=12.38;ReadPosRankSum=2.404;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465935    GT:AD:DP:GQ:PL    0/1:3,11:14:76.76:203,0,77
20    44416353    rs112786103    C    CT    292.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=22;FS=0.0;HRun=10;HaplotypeScore=214.6521;IndelType=I;MQ=49.38;MQ0=0;MQRankSum=-0.736;QD=13.28;ReadPosRankSum=1.076;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465935    GT:AD:DP:GQ:PL    0/1:11,11:22:49.59:331,0,50
20    44417334    rs6032535    T    C    41.52    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.84;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243938    GT:AD:DP:GQ:PL    0/1:1,2:3:34.77:72,0,35
20    44417363    rs6032536    A    G    59.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=11.95;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243938    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:90,0,67
20    44417643    rs6032537    A    G    1351.32    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.192;DB;DP=133;Dels=0.0;FS=3.314;HRun=0;HaplotypeScore=2.7442;MQ=59.31;MQ0=0;MQRankSum=0.178;QD=10.08;ReadPosRankSum=-1.215;SNPEFF_AMINO_ACID_CHANGE=G46;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44417570_44417698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243938    GT:AD:DP:GQ:PL    0/1:82,50:133:99:1381,0,2412
20    44417675    rs6032538    G    C    978.58    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.942;DB;DP=123;Dels=0.0;FS=0.761;HRun=0;HaplotypeScore=0.8321;MQ=59.21;MQ0=0;MQRankSum=-1.005;QD=7.96;ReadPosRankSum=0.115;SNPEFF_AMINO_ACID_CHANGE=H36D;SNPEFF_CODON_CHANGE=Cat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44417570_44417698;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243938    GT:AD:DP:GQ:PL    0/1:79,44:123:99:1009,0,2535
20    44418471    rs411945    G    C    237.52    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.806;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.378;QD=9.5;ReadPosRankSum=0.765;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243938    GT:AD:DP:GQ:PL    0/1:17,8:25:99:268,0,537
20    44418564    rs3746493    A    G    483.45    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=0.333;DB;DP=45;Dels=0.0;FS=2.555;HRun=1;HaplotypeScore=1.7998;MQ=59.49;MQ0=0;MQRankSum=0.126;QD=10.74;ReadPosRankSum=0.379;SNPEFF_AMINO_ACID_CHANGE=S17;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44418533_44418621;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WFDC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243938    GT:AD:DP:GQ:PL    0/1:26,19:45:99:513,0,772
20    44420637    rs2664539    G    A    53.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.37;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415790    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:85,6,0
20    44420682    rs2664591    T    C    77.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.3;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=P13;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44420576_44420748;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372622    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:107,0,29
20    44422373    rs6032544    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372622    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
20    44422705    rs6032545    G    T    547.12    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.732;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.844;QD=15.63;ReadPosRankSum=0.513;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372622    GT:AD:DP:GQ:PL    0/1:16,19:35:99:577,0,554
20    44422833    rs113562688    G    A    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372622    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
20    44442908    rs1711194    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=11.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNTTIP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372622    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:67,6,0
20    44452697    rs4629    C    A    1678.47    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=0.757;DB;DP=107;Dels=0.0;FS=2.646;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.367;QD=15.69;ReadPosRankSum=-0.464;SNPEFF_AMINO_ACID_CHANGE=T113;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44452630_44452766;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNNC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372557    GT:AD:DP:GQ:PL    0/1:44,62:107:99:1708,0,1243
20    44468931    rs197669    T    C    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217455    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:74,0,34
20    44468982    rs11418101    A    AC    263.92    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.896;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=35.7535;IndelType=I;MQ=55.66;MQ0=0;MQRankSum=-0.278;QD=23.99;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217455    GT:AD:DP:GQ:PL    0/1:4,7:11:99:303,0,135
20    44469290    rs4638862    G    A    1244.19    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.072;DB;DP=97;Dels=0.0;FS=4.053;HRun=0;HaplotypeScore=0.9997;MQ=59.14;MQ0=0;MQRankSum=0.341;QD=12.83;ReadPosRankSum=-0.282;SNPEFF_AMINO_ACID_CHANGE=A145T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44469278_44470369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372542    GT:AD:DP:GQ:PL    0/1:51,46:97:99:1274,0,1365
20    44470676    rs3848713    T    C    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_AMINO_ACID_CHANGE=S198;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44470672_44471520;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342644    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
20    44476950    .    ATAT    A    577.92    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=3.937;DP=23;FS=0.0;HRun=0;HaplotypeScore=93.2253;IndelType=D;MQ=57.06;MQ0=0;MQRankSum=1.291;QD=25.13;ReadPosRankSum=0.031;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481938    GT:AD:DP:GQ:PL    0/1:10,13:23:99:617,0,535
20    44505973    rs2903808    T    C    831.90    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=0.692;DB;DP=57;Dels=0.0;FS=9.874;HRun=1;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=14.59;ReadPosRankSum=-0.148;SNPEFF_AMINO_ACID_CHANGE=V253A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44505353_44507598;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454862    GT:AD:DP:GQ:PL    0/1:26,31:57:99:862,0,773
20    44506418    rs1045493    G    A    557.95    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.658;DB;DP=39;Dels=0.0;FS=4.655;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;MQRankSum=0.716;QD=14.31;ReadPosRankSum=-0.015;SNPEFF_AMINO_ACID_CHANGE=R401;SNPEFF_CODON_CHANGE=cgG/cgA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44505353_44507598;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000454862    GT:AD:DP:GQ:PL    0/1:18,21:39:99:588,0,635
20    44515059    rs6094224    T    C    1667.69    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=118;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.8;MQ0=0;MQRankSum=-0.329;QD=14.13;ReadPosRankSum=2.501;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372519    GT:AD:DP:GQ:PL    0/1:57,61:118:99:1698,0,1602
20    44517360    rs1516580    T    C    481.41    PASS    AB=0.367;AC=1;AF=0.50;AN=2;BaseQRankSum=0.247;DB;DP=30;Dels=0.0;FS=7.045;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.966;QD=16.05;ReadPosRankSum=-0.112;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372520    GT:AD:DP:GQ:PL    0/1:11,19:30:99:511,0,326
20    44518843    rs3817731    A    T    290.14    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=18.13;ReadPosRankSum=-0.163;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZSWIM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372520    GT:AD:DP:GQ:PL    0/1:6,10:16:99:320,0,194
20    44519643    rs2868362    G    A    43.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=10.89;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf165;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372519    GT:AD:DP:GQ:PL    0/1:1,3:4:33.62:74,0,34
20    44520237    rs11467527    CCTG    C    177.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.047;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=69.8847;IndelType=D;MQ=59.18;MQ0=0;MQRankSum=-0.259;QD=11.86;ReadPosRankSum=-2.047;SNPEFF_AMINO_ACID_CHANGE=L11-;SNPEFF_CODON_CHANGE=ctg/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_20_44520208_44520401;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000191018    GT:AD:DP:GQ:PL    0/1:9,6:15:99:217,0,325
20    44522005    rs742034    A    G    280.22    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.667;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.267;QD=20.02;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000191018    GT:AD:DP:GQ:PL    0/1:5,9:14:99:310,0,167
20    44522594    rs4810476    A    G    481.36    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.201;DB;DP=51;Dels=0.0;FS=5.629;HRun=1;HaplotypeScore=0.9992;MQ=60.0;MQ0=0;MQRankSum=0.051;QD=9.44;ReadPosRankSum=-1.271;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354050    GT:AD:DP:GQ:PL    0/1:30,21:51:99:511,0,966
20    44523248    rs2075962    T    C    580.77    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.044;DB;DP=32;Dels=0.0;FS=1.702;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.277;QD=18.15;ReadPosRankSum=-0.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485627    GT:AD:DP:GQ:PL    0/1:12,20:32:99:611,0,337
20    44523442    rs3215446    TC    T    1497.20    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=6.442;DB;DP=119;FS=8.547;HRun=5;HaplotypeScore=323.1792;IndelType=D;MQ=58.83;MQ0=0;MQRankSum=0.332;QD=12.58;ReadPosRankSum=0.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372459    GT:AD:DP:GQ:PL    0/1:65,53:119:99:1536,0,1995
20    44523547    rs2075961    G    A    961.47    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.483;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.94;MQ0=0;MQRankSum=-0.006;QD=14.14;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372459    GT:AD:DP:GQ:PL    0/1:33,35:68:99:991,0,975
20    44523782    rs4608591    C    T    475.78    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.363;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.675;QD=17.62;ReadPosRankSum=0.208;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372459    GT:AD:DP:GQ:PL    0/1:11,15:27:99:506,0,289
20    44528388    rs56235473    C    A    271.80    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.883;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.795;QD=14.31;ReadPosRankSum=0.265;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000191018    GT:AD:DP:GQ:PL    0/1:10,9:19:99:302,0,306
20    44530838    rs553359    G    T    100.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.81;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000191018    GT:AD:DP:GQ:PL    0/1:2,4:6:58.95:131,0,59
20    44533369    rs11086986    C    A    430.49    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=25;Dels=0.0;FS=2.593;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=1.142;QD=17.22;ReadPosRankSum=-0.205;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354050    GT:AD:DP:GQ:PL    0/1:11,14:25:99:460,0,274
20    44538427    rs378114    T    C    237.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=15;Dels=0.0;FS=8.675;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=15.84;ReadPosRankSum=-0.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354050    GT:AD:DP:GQ:PL    0/1:6,9:15:99:268,0,206
20    44538484    rs435306    G    T    293.28    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.261;DB;DP=17;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.299;QD=17.25;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLTP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354050    GT:AD:DP:GQ:PL    0/1:8,9:17:99:323,0,219
20    44567335    rs6032597    G    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372409    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
20    44574533    rs11696196    C    T    516.67    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=1.291;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=12.6;ReadPosRankSum=1.699;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243961    GT:AD:DP:GQ:PL    0/1:22,19:41:99:547,0,658
20    44578674    rs16990951    T    A    173.89    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.186;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=15.81;ReadPosRankSum=1.532;SNPEFF_AMINO_ACID_CHANGE=P1019;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44578605_44578708;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426788    GT:AD:DP:GQ:PL    0/1:5,6:11:99:204,0,141
20    44578776    rs6065910    A    G    288.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372409    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:322,24,0
20    44578961    rs3746503    A    G    573.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.42;DB;DP=46;Dels=0.0;FS=1.126;HRun=2;HaplotypeScore=0.9867;MQ=58.99;MQ0=0;MQRankSum=-0.669;QD=12.46;ReadPosRankSum=2.289;SNPEFF_AMINO_ACID_CHANGE=P1128;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44578858_44579012;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322927    GT:AD:DP:GQ:PL    0/1:23,23:46:99:603,0,694
20    44588109    rs3746507    G    A    237.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475002    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:271,21,0
20    44592364    rs3746511    C    T    1768.72    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.773;DB;DP=130;Dels=0.0;FS=3.228;HRun=1;HaplotypeScore=2.6561;MQ=59.14;MQ0=0;MQRankSum=-1.745;QD=13.61;ReadPosRankSum=0.305;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476822    GT:AD:DP:GQ:PL    0/1:67,62:130:99:1799,0,2015
20    44592636    rs3746512    C    T    347.13    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.171;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6456;MQ=55.74;MQ0=0;MQRankSum=-0.512;QD=12.4;ReadPosRankSum=0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476822    GT:AD:DP:GQ:PL    0/1:11,15:28:99:377,0,189
20    44596207    rs6032606    C    G    1080.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.86;SNPEFF_AMINO_ACID_CHANGE=S139T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44596133_44596273;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426788    GT:AD:DP:GQ:PL    1/1:0,31:31:87.24:1114,87,0
20    44596545    rs3848719    G    A    489.86    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=31;Dels=0.0;FS=1.585;HRun=1;HaplotypeScore=1.575;MQ=59.25;MQ0=0;MQRankSum=-0.064;QD=15.8;ReadPosRankSum=1.122;SNPEFF_AMINO_ACID_CHANGE=S214;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44596373_44596666;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000322927    GT:AD:DP:GQ:PL    0/1:13,18:31:99:520,0,333
20    44599839    rs6017715    G    C    225.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF335;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243961    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:259,21,0
20    44639511    rs3918253    C    T    175.28    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.591;QD=11.69;ReadPosRankSum=1.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372330    GT:AD:DP:GQ:PL    0/1:9,6:15:99:205,0,253
20    44640225    rs17576    A    G    791.89    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.146;DB;DP=67;Dels=0.0;FS=0.949;HRun=2;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-0.334;QD=11.82;ReadPosRankSum=-0.861;SNPEFF_AMINO_ACID_CHANGE=Q279R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44640213_44640386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372330    GT:AD:DP:GQ:PL    0/1:31,36:67:99:822,0,927
20    44640959    rs3918256    G    A    234.73    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.783;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7741;MQ=58.45;MQ0=0;MQRankSum=1.418;QD=7.82;ReadPosRankSum=-1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372330    GT:AD:DP:GQ:PL    0/1:18,12:30:99:265,0,511
20    44641731    rs3787268    G    A    163.54    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=2.162;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9999;MQ=59.03;MQ0=0;MQRankSum=0.549;QD=6.81;ReadPosRankSum=-0.678;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372330    GT:AD:DP:GQ:PL    0/1:15,8:24:99:194,0,477
20    44642406    rs2250889    G    C    305.71    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=58.2;MQ0=0;MQRankSum=-1.47;QD=23.52;ReadPosRankSum=1.203;SNPEFF_AMINO_ACID_CHANGE=R144P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44642341_44642435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000545925    GT:AD:DP:GQ:PL    0/1:1,12:13:0.34:334,0,0
20    44645010    rs20544    C    T    434.96    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.439;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9523;MQ=60.0;MQ0=0;MQRankSum=1.629;QD=11.15;ReadPosRankSum=-0.496;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372330    GT:AD:DP:GQ:PL    0/1:22,17:39:99:465,0,677
20    44663475    rs11699481    T    C    440.36    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=3.143;DB;DP=41;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=10.74;ReadPosRankSum=0.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243964    GT:AD:DP:GQ:PL    0/1:20,21:41:99:470,0,706
20    44664371    rs3746515    C    T    237.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.53;DB;DP=18;Dels=0.0;FS=2.392;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.413;QD=13.17;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243964    GT:AD:DP:GQ:PL    0/1:9,9:18:99:267,0,283
20    44675136    rs3848727    T    C    609.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243964    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:642,48,0
20    44676388    rs73112825    G    A    30.58    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.1;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243964    GT:AD:DP:GQ:PL    0/1:4,2:6:60.57:61,0,144
20    44678348    rs77916378    G    A    251.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.16;SNPEFF_AMINO_ACID_CHANGE=A700;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44678261_44678429;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243964    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:284,21,0
20    44678510    rs73112831    C    A    35.06    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-0.358;QD=7.01;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC12A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539566    GT:AD:DP:GQ:PL    0/1:2,3:5:35.74:65,0,36
20    44691350    rs1537028    T    G    2063.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=T443;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44689624_44691528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290231    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2096,165,0
20    44693947    rs2903908    T    C    958.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=35.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372291    GT:AD:DP:GQ:PL    1/1:0,27:27:78.22:992,78,0
20    44697431    rs3092502    T    G    245.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290231    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
20    44746982    rs1883832    T    C    496.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=31.03;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD40;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461171    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:530,42,0
20    44757407    rs3765459    G    A    198.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=P137;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44756969_44758153;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD40;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372278    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
20    44806643    rs34603854    G    A    255.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.998;DB;DP=16;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.838;QD=15.94;ReadPosRankSum=-0.578;SNPEFF_AMINO_ACID_CHANGE=A619;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44806585_44806836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372262    GT:AD:DP:GQ:PL    0/1:8,8:16:99:285,0,229
20    44806727    rs35585191    G    A    73.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=9.14;ReadPosRankSum=-1.368;SNPEFF_AMINO_ACID_CHANGE=S591;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44806585_44806836;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372262    GT:AD:DP:GQ:PL    0/1:4,4:8:95.62:103,0,96
20    44806875    rs2281335    G    A    105.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=9;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=11.72;ReadPosRankSum=-0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372262    GT:AD:DP:GQ:PL    0/1:3,6:9:99:135,0,105
20    44815762    rs2248597    A    G    108.90    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.447;QD=10.89;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372262    GT:AD:DP:GQ:PL    0/1:6,4:10:99:139,0,168
20    44979641    rs4810503    T    G    309.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420518    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:342,27,0
20    44979642    rs4810504    A    C    333.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420518    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:367,30,0
20    44980949    .    C    T    329.99    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=1.278;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.082;QD=13.2;ReadPosRankSum=-1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424568    GT:AD:DP:GQ:PL    0/1:13,12:25:99:360,0,452
20    44984224    rs1475047    T    C    44.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484188    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
20    44985307    rs911435    T    G    351.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;QD=27.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC35C2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484188    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:384,30,0
20    44996182    rs2257495    A    G    968.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=D223;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_44994693_44996199;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452857    GT:AD:DP:GQ:PL    1/1:0,29:29:78.24:1002,78,0
20    45003326    rs2261213    A    G    511.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450812    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:544,42,0
20    45003788    rs2257545    T    C    738.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450812    GT:AD:DP:GQ:PL    1/1:0,20:20:57.19:772,57,0
20    45008729    rs2260959    G    A    242.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460474    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
20    45131759    rs6017883    C    T    478    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.33;DB;DP=34;Dels=0.0;FS=3.176;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.535;QD=14.06;ReadPosRankSum=0.949;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF334;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000347606    GT:AD:DP:GQ:PL    0/1:18,16:34:99:508,0,460
20    45173856    rs6017908    G    C    67.22    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.4;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf123;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279028    GT:AD:DP:GQ:PL    0/1:5,3:8:97.22:97,0,182
20    45188971    rs910062    C    A    335.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279027    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:368,30,0
20    45191804    rs202399    A    G    39.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468915    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
20    45204266    rs1880898    G    A    193.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=P344;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_45204212_45204324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396360    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:227,18,0
20    45217008    rs3752268    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279027    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
20    45238869    rs11907603    G    C    79.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.81;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279027    GT:AD:DP:GQ:PL    0/1:2,3:5:64.58:109,0,65
20    45239402    rs76827559    T    C    74.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=12.49;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279027    GT:AD:DP:GQ:PL    0/1:2,4:6:64.58:105,0,65
20    45242269    rs2273024    G    C    169.03    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=17;Dels=0.0;FS=2.115;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=9.94;ReadPosRankSum=1.059;SNPEFF_AMINO_ACID_CHANGE=L22;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_45242099_45242364;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC13A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290317    GT:AD:DP:GQ:PL    0/1:9,7:17:99:199,0,312
20    45353564    rs183563269    A    G    87.13    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=49.17;MQ0=0;MQRankSum=-0.198;QD=12.45;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359271    GT:AD:DP:GQ:PL    0/1:2,5:7:63.83:117,0,64
20    45357878    rs1122067    A    G    218.53    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=17;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.144;QD=12.85;ReadPosRankSum=0.625;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359271    GT:AD:DP:GQ:PL    0/1:9,8:17:99:249,0,288
20    45358145    rs2425906    T    G    608.92    PASS    AB=0.212;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.118;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.15;MQ0=0;MQRankSum=-0.118;QD=18.45;ReadPosRankSum=-0.638;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359271    GT:AD:DP:GQ:PL    0/1:7,26:33:99:639,0,191
20    45358223    rs2425907    C    T    298.04    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.098;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=56.04;MQ0=0;MQRankSum=0.244;QD=16.56;ReadPosRankSum=-0.146;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359271    GT:AD:DP:GQ:PL    0/1:8,10:18:99:328,0,192
20    45629941    rs3746492    G    A    323.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:356,27,0
20    45630157    rs6094549    T    G    534.27    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.598;DB;DP=42;Dels=0.0;FS=3.4;HRun=0;HaplotypeScore=0.9933;MQ=59.45;MQ0=0;MQRankSum=-2.329;QD=12.72;ReadPosRankSum=-0.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    0/1:22,20:42:99:564,0,621
20    45801319    rs3827049    T    A    1808    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.59;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:1,55:56:99:1841,135,0
20    45808227    rs62201430    A    T    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
20    45808688    rs6066225    T    A    188.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=20.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:221,18,0
20    45809652    rs2235907    A    G    777.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:810,60,0
20    45811788    rs8124995    G    T    326.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:359,27,0
20    45811860    rs8124918    A    G    993.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,38:38:90.19:1026,90,0
20    45816562    rs3818010    A    G    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
20    45816566    rs3818011    A    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
20    45816594    rs3818012    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    45816639    rs3818013    A    G    40.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
20    45816649    rs3818014    C    T    47.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EYA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317304    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
20    45853037    rs2664544    A    G    3734.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7262;MQ=58.96;MQ0=0;QD=33.35;SNPEFF_AMINO_ACID_CHANGE=T1017;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_45852970_45853209;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000352431    GT:AD:DP:GQ:PL    1/1:0,112:112:99:3735,286,0
20    45856045    rs1124178    A    G    1496.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262975    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1530,114,0
20    45891189    rs2294560    T    C    461.71    PASS    AB=0.053;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.735;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-0.578;QD=24.3;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262975    GT:AD:DP:GQ:PL    0/1:1,18:19:0.87:490,0,1
20    45905651    rs3746485    T    C    133.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.799;MQ=51.56;MQ0=0;QD=12.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262975    GT:AD:DP:GQ:PL    1/1:0,11:11:15.03:166,15,0
20    45923383    rs2076402    G    T    2027.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.821;QD=35.57;ReadPosRankSum=-1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262975    GT:AD:DP:GQ:PL    1/1:1,56:57:99:2060,132,0
20    45923539    rs6066270    C    T    2298.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.472;DB;DP=67;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.262;QD=34.3;ReadPosRankSum=0.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYND8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262975    GT:AD:DP:GQ:PL    1/1:1,66:67:99:2331,139,0
20    46252975    rs1122944    T    C    81.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490248    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
20    46267950    rs4810648    C    T    1018.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542882    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1051,75,0
20    46279531    rs2256720    T    C    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340189    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
20    46279836    rs147879509    ACAG    A    689.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=0;HaplotypeScore=133.929;IndelType=D;MQ=62.26;MQ0=1;QD=20.29;SNPEFF_AMINO_ACID_CHANGE=Q1181-;SNPEFF_CODON_CHANGE=cag/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_20_46279726_46280020;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341724    GT:AD:DP:GQ:PL    1/1:15,19:33:54.18:732,54,0
20    46287012    rs444271    C    G    366.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340189    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:400,30,0
20    46290250    rs2281279    T    C    678.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCOA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340189    GT:AD:DP:GQ:PL    1/1:0,18:18:54.17:711,54,0
20    46292149    rs2235734    T    G    1244.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359930    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1278,99,0
20    46294725    rs2076545    C    T    1854.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.6;MQ0=0;QD=37.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359930    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1888,147,0
20    46294864    rs13044281    A    G    904.78    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.034;DB;DP=135;Dels=0.0;FS=32.208;HRun=0;HaplotypeScore=2.7285;MQ=52.43;MQ0=0;MQRankSum=-6.307;QD=6.7;ReadPosRankSum=0.33;SNPEFF_AMINO_ACID_CHANGE=Y10;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_46294832_46294893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371978    GT:AD:DP:GQ:PL    0/1:88,46:135:99:935,0,2660
20    46300745    rs11086220    C    T    42.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465769    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
20    46300796    rs1105425    C    T    216.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465769    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
20    46300805    rs1105424    A    G    257.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465769    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:291,21,0
20    46305631    rs1577063    C    G    124.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359930    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
20    46307138    rs6018635    T    A    135.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359930    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
20    46313135    rs2297586    C    T    170.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474450    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
20    46365359    rs6063143    T    C    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359930    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
20    46365571    rs3810526    A    G    814.80    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.533;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.467;QD=30.18;ReadPosRankSum=0.533;SNPEFF_AMINO_ACID_CHANGE=T97;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_46365447_46365686;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359930    GT:AD:DP:GQ:PL    1/1:1,26:27:37.42:848,37,0
20    46365636    rs56218501    C    T    481.07    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.875;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.512;QD=13.0;ReadPosRankSum=-1.066;SNPEFF_AMINO_ACID_CHANGE=A76T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_46365447_46365686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SULF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359930    GT:AD:DP:GQ:PL    0/1:17,20:37:99:511,0,417
20    47253150    rs2664521    T    C    108.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.12;SNPEFF_AMINO_ACID_CHANGE=K1340E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47253001_47253221;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371941    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:141,12,0
20    47361519    rs3746816    T    C    1726.48    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.655;DB;DP=91;Dels=0.0;FS=7.054;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.027;QD=18.97;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PREX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371941    GT:AD:DP:GQ:PL    0/1:35,56:91:99:1756,0,1060
20    47580347    rs2295031    A    G    410.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:443,33,0
20    47582785    rs2295026    T    A    94.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
20    47601509    rs1569749    A    G    293.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
20    47610896    rs2295033    C    T    552.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=34.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:585,45,0
20    47626601    rs2295578    G    C    538.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:572,42,0
20    47626736    rs2295579    A    T    2138.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2172,160,0
20    47626847    rs2295580    T    C    1711.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_AMINO_ACID_CHANGE=G1221;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47626769_47626941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1744,129,0
20    47628368    rs11473356    ATG    A    83.14    QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=1.694;DB;DP=48;FS=0.0;HRun=0;HaplotypeScore=251.1336;IndelType=D;MQ=59.52;MQ0=0;MQRankSum=-0.411;QD=1.73;ReadPosRankSum=1.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    0/1:40,6:48:99:122,0,1414
20    47628434    rs2273531    T    C    4117.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6105;MQ=59.62;MQ0=0;QD=34.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,121:121:99:4118,310,0
20    47635715    rs730543    G    A    195.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:228,18,0
20    47639464    rs2426106    G    C    405.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:439,33,0
20    47639737    rs7270848    A    G    885.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:919,69,0
20    47645002    rs73623293    G    GT    902.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=1;HaplotypeScore=41.2512;IndelType=I;MQ=60.0;MQ0=0;QD=42.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:945,63,0
20    47648353    rs3091866    A    G    211.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:244,21,0
20    47648854    rs1022687    C    T    229.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:262,21,0
20    47648856    rs1022688    G    A    236.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGEF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371917    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:269,21,0
20    47675176    rs2064853    T    A    669.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:0,25:25:63.17:703,63,0
20    47679963    rs6019621    C    T    525.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:559,42,0
20    47685320    rs2227946    G    C    2011.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.1;SNPEFF_AMINO_ACID_CHANGE=L212;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47685252_47685359;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2045,147,0
20    47685493    rs2075675    T    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
20    47688620    rs6512567    T    G    160.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:193,15,0
20    47689036    rs79186842    A    G    614.33    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.928;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=59.44;MQ0=0;MQRankSum=-0.327;QD=14.98;ReadPosRankSum=-1.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    0/1:22,19:41:99:644,0,721
20    47691211    rs2075676    C    A    283.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
20    47691430    rs35214127    A    T    75.57    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=9.45;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    0/1:5,3:8:99:106,0,149
20    47691743    rs17448715    C    T    243.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:277,21,0
20    47701765    rs1885163    T    C    367.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:1,11:12:30.10:400,30,0
20    47705763    rs68132891    GTT    G    646.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=12;HaplotypeScore=112.7487;IndelType=D;MQ=58.17;MQ0=0;QD=23.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSE1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262982    GT:AD:DP:GQ:PL    1/1:3,22:27:71.58:689,72,0
20    47739555    rs348260    A    G    398.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437404    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:431,33,0
20    47775094    rs45622034    C    T    421.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=60.0;MQ0=0;MQRankSum=-0.401;QD=32.4;ReadPosRankSum=0.401;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340954    GT:AD:DP:GQ:PL    1/1:1,12:13:11.46:454,11,0
20    47775685    rs71184267    T    TA    283.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=15;FS=0.0;HRun=13;HaplotypeScore=113.2082;IndelType=I;MQ=55.52;MQ0=0;MQRankSum=0.992;QD=18.93;ReadPosRankSum=1.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAU1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340954    GT:AD:DP:GQ:PL    1/1:3,12:15:26.01:326,26,0
20    47839591    rs2273145    C    T    957.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.811;MQ=60.0;MQ0=0;QD=31.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371764    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:990,75,0
20    47841660    rs11553387    G    T    2854.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;QD=32.81;SNPEFF_AMINO_ACID_CHANGE=G206V;SNPEFF_CODON_CHANGE=gGa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47841650_47841736;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371764    GT:AD:DP:GQ:PL    1/1:0,87:87:99:2887,232,0
20    47841911    rs238159    T    C    70.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371764    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
20    47842853    rs238162    C    T    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371764    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
20    47845220    rs238165    T    A    3489.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7074;MQ=59.42;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462328    GT:AD:DP:GQ:PL    1/1:0,111:112:99:3489,259,0
20    47846586    rs171130    T    C    132.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462328    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
20    47847146    rs238170    T    C    53.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462328    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    47850182    rs238148    C    T    2316.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=30.09;SNPEFF_AMINO_ACID_CHANGE=F434;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47850105_47850246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371764    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2350,181,0
20    47852822    rs238152    G    A    1511.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9572;MQ=59.16;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493252    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1545,129,0
20    47855655    rs79925479    G    T    992.10    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=65;Dels=0.0;FS=5.194;HRun=1;HaplotypeScore=0.6651;MQ=59.29;MQ0=0;MQRankSum=-0.014;QD=15.26;ReadPosRankSum=0.48;SNPEFF_AMINO_ACID_CHANGE=S1203R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47854483_47855837;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371754    GT:AD:DP:GQ:PL    0/1:31,34:65:99:1022,0,927
20    47856037    rs238156    T    G    77.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371764    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
20    47858290    rs35759030    G    A    752.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371752    GT:AD:DP:GQ:PL    1/1:0,22:23:60.16:785,60,0
20    47858922    rs238203    T    G    353.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371752    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:386,30,0
20    47859015    rs238204    A    G    1910.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=57.05;MQ0=0;QD=34.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371752    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1943,156,0
20    47859254    rs11467264    CTTTTTTTTTTTTTT    C    4000.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.0;HRun=23;HaplotypeScore=1066.6688;IndelType=D;MQ=41.61;MQ0=0;QD=48.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371752    GT:AD:DP:GQ:PL    1/1:37,45:82:99:4000,135,0
20    47863282    rs8123912    G    C    535.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371764    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:568,42,0
20    47863409    rs71647791    ATT    A    101.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=13;HaplotypeScore=33.7665;IndelType=D;MQ=59.83;MQ0=0;QD=12.65;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_20_47862443_47863418;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000537431    GT:AD:DP:GQ:PL    1/1:3,5:8:14.88:143,15,0
20    47865372    rs238208    G    A    1831.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=L1397;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47862434_47866248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371752    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1864,138,0
20    47865509    rs238209    G    A    1666.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=59.07;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=T1351I;SNPEFF_CODON_CHANGE=aCc/aTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47862434_47866248;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371752    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1699,129,0
20    47865784    rs6512577    C    T    1645.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.56;MQ0=0;QD=31.65;SNPEFF_AMINO_ACID_CHANGE=M1259I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47862434_47866248;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371752    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1679,132,0
20    47870506    rs238215    T    C    898.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.5;MQ0=0;QD=28.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,31:31:81.19:931,81,0
20    47870752    rs238216    T    C    113.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:146,12,0
20    47871197    rs56335217    G    C    1470.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=56.45;MQ0=0;QD=30.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1504,126,0
20    47871277    rs74315163    ACCTTGGAC    A    1153    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=182.4708;IndelType=D;MQ=43.15;MQ0=0;QD=64.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:2,15:18:48.16:1195,48,0
20    47872327    rs238220    A    G    1167.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=32.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,36:36:87.28:1201,87,0
20    47872377    rs78078685    C    G    1293.50    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.77;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.674;QD=35.93;ReadPosRankSum=0.77;SNPEFF_AMINO_ACID_CHANGE=Q924H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47872345_47872484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:1,35:36:64.68:1327,65,0
20    47874005    rs3021    A    G    1720.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4645;MQ=56.66;MQ0=0;QD=29.67;SNPEFF_AMINO_ACID_CHANGE=H675;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47873954_47874201;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455070    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1754,144,0
20    47881597    rs238176    A    G    73.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
20    47882893    rs238178    T    A    349.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:382,30,0
20    47886310    rs79484687    TG    T    269.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=21.4327;IndelType=D;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:312,24,0
20    47886684    rs57950    G    A    3027.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=59.73;MQ0=0;QD=35.2;SNPEFF_AMINO_ACID_CHANGE=Y359;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_47886479_47887760;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455070    GT:AD:DP:GQ:PL    1/1:0,86:86:99:3060,229,0
20    47892270    rs238191    T    C    648.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=36.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:681,54,0
20    47895197    rs479474    C    T    1580.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1614,120,0
20    47895242    rs6648    A    G    1805.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=33.44;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNFX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371744    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1839,135,0
20    47905508    rs8197    G    A    2052.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.69;MQ0=0;MQRankSum=0.982;QD=34.21;ReadPosRankSum=-1.559;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZNFX1-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326677    GT:AD:DP:GQ:PL    1/1:1,59:60:99:2086,154,0
20    48129706    rs5629    G    T    978.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.5;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=R373;SNPEFF_CODON_CHANGE=Cga/Aga;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48129617_48129798;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGIS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244043    GT:AD:DP:GQ:PL    1/1:0,31:31:75.24:1012,75,0
20    48130628    rs6019879    T    C    374.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGIS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244043    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:408,30,0
20    48130982    rs7274202    C    T    133.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTGIS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244043    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
20    48257149    rs421801    C    T    1895.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_AMINO_ACID_CHANGE=E220;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48257015_48257202;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371711    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1928,150,0
20    48259034    rs2235855    A    G    1070.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.45;SNPEFF_AMINO_ACID_CHANGE=L193;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48259005_48259121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371711    GT:AD:DP:GQ:PL    1/1:0,33:33:84.27:1104,84,0
20    48272835    rs6067167    T    C    131.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371711    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:164,12,0
20    48273299    rs4810968    T    C    1373.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371711    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1407,111,0
20    48300990    rs6019972    C    T    127.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371711    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
20    48301146    rs6512586    G    A    917.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371711    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:950,72,0
20    48330030    rs12329570    G    C    315.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B4GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371711    GT:AD:DP:GQ:PL    1/1:0,9:10:27.09:349,27,0
20    48466438    rs581456    A    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361573    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
20    48467560    rs532237    G    C    237.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361573    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:270,21,0
20    48479356    rs71882978    TATGA    T    436.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=51.8845;IndelType=D;MQ=57.52;MQ0=0;QD=43.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361573    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:479,30,0
20    48481425    .    G    A    718.14    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.129;DP=35;Dels=0.0;FS=2.707;HRun=0;HaplotypeScore=0.8321;MQ=59.34;MQ0=0;MQRankSum=0.365;QD=20.52;ReadPosRankSum=-1.199;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361573    GT:AD:DP:GQ:PL    0/1:12,23:35:99:748,0,390
20    48491258    rs542234    T    G    1658.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=34.56;SNPEFF_AMINO_ACID_CHANGE=L106;SNPEFF_CODON_CHANGE=ctT/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48491242_48491358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539601    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1692,129,0
20    48522330    rs495337    G    A    819.40    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.61;MQ0=0;MQRankSum=0.578;QD=30.35;ReadPosRankSum=0.449;SNPEFF_AMINO_ACID_CHANGE=C326;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48521878_48523382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543716    GT:AD:DP:GQ:PL    1/1:1,26:27:33.44:852,33,0
20    48522585    rs492702    G    A    782.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_AMINO_ACID_CHANGE=S241;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48521878_48523382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543716    GT:AD:DP:GQ:PL    1/1:0,27:27:60.19:815,60,0
20    48524827    rs2769982    A    G    2507.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=59.67;MQ0=0;QD=36.34;SNPEFF_AMINO_ACID_CHANGE=Y67;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48524692_48525129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPATA2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000289431    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2541,205,0
20    48561893    rs4810993    A    G    943.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.49;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244061    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:977,72,0
20    48562083    rs11473738    G    GTTGGACACC    1917.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=84.885;IndelType=I;MQ=40.55;MQ0=0;QD=119.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244061    GT:AD:DP:GQ:PL    1/1:1,12:16:48.16:1960,48,0
20    48562084    .    T    G    37.28    HaplotypeScoreFilter13    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.953;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=13.9798;MQ=40.55;MQ0=0;MQRankSum=1.783;QD=2.33;ReadPosRankSum=-2.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244061    GT:AD:DP:GQ:PL    0/1:13,2:16:23.47:67,0,23
20    48562797    rs67625663    C    CT    431.54    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=71;FS=5.948;HRun=15;HaplotypeScore=651.8551;IndelType=I;MQ=50.58;MQ0=0;MQRankSum=-1.911;QD=6.08;ReadPosRankSum=-2.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244061    GT:AD:DP:GQ:PL    0/1:36,29:71:47.73:471,0,48
20    48568503    rs2281216    C    T    149.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF114;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244061    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:182,15,0
20    48700947    rs67366514    T    C    2387.41    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.548;DB;DP=147;Dels=0.0;FS=2.993;HRun=1;HaplotypeScore=0.7887;MQ=59.4;MQ0=0;MQRankSum=1.505;QD=16.24;ReadPosRankSum=0.829;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM189-UBE2V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341698    GT:AD:DP:GQ:PL    0/1:64,83:147:99:2417,0,1984
20    48713049    rs6012831    G    A    202.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM189-UBE2V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341698    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:235,18,0
20    48729677    rs126907    C    G    135.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=22.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468926    GT:AD:DP:GQ:PL    1/1:0,5:6:15.04:168,15,0
20    48746189    rs6122878    C    T    347.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.996;DB;DP=30;Dels=0.0;FS=3.382;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-1.528;QD=11.57;ReadPosRankSum=1.041;SNPEFF_AMINO_ACID_CHANGE=P121;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48746083_48746227;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM189;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371650    GT:AD:DP:GQ:PL    0/1:18,12:30:99:377,0,472
20    48747697    rs55894522    T    C    149.13    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.067;QD=16.57;ReadPosRankSum=-1.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM189-UBE2V1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341698    GT:AD:DP:GQ:PL    0/1:2,7:9:60.39:179,0,60
20    48808011    rs4253439    C    T    36.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.358;QD=7.24;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=A147;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_48807376_48809212;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CEBPB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303004    GT:AD:DP:GQ:PL    0/1:2,3:5:50.89:66,0,51
20    48909496    rs4811024    C    G    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-290F20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371639    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
20    48914922    rs6063499    G    C    141.58    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.806;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.544;QD=4.29;ReadPosRankSum=1.023;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-290F20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371639    GT:AD:DP:GQ:PL    0/1:25,8:33:99:172,0,749
20    48915117    rs6020425    C    T    81.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-290F20.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371639    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
20    49191415    rs117274412    C    T    41.63    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371621    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:72,0,30
20    49194866    rs3215684    A    AT    632.65    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.411;DB;DP=32;FS=0.0;HRun=0;HaplotypeScore=93.7228;IndelType=I;MQ=58.89;MQ0=0;MQRankSum=0.697;QD=19.77;ReadPosRankSum=-1.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371621    GT:AD:DP:GQ:PL    0/1:17,15:32:99:672,0,575
20    49196167    rs2282147    T    C    907.56    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.051;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.726;QD=18.91;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371621    GT:AD:DP:GQ:PL    0/1:20,28:48:99:938,0,635
20    49196599    rs718049    C    T    58.11    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.684;QD=7.26;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTPN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371621    GT:AD:DP:GQ:PL    0/1:5,3:8:87.55:88,0,88
20    49199355    rs16989673    C    CG    200.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=26.0623;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=20.08;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    0/1:4,6:10:99:240,0,126
20    49203895    rs17788230    C    T    229.98    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.746;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.527;QD=9.2;ReadPosRankSum=1.193;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488529    GT:AD:DP:GQ:PL    0/1:15,10:25:99:260,0,399
20    49209846    rs41282808    G    A    68.10    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=13.62;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462493    GT:AD:DP:GQ:PL    0/1:2,3:5:67.19:98,0,67
20    49210953    rs914458    G    C    258.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462493    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:291,21,0
20    49214156    rs6020624    A    G    210.50    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=15;Dels=0.0;FS=2.158;HRun=3;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.212;QD=14.03;ReadPosRankSum=-0.495;SNPEFF_AMINO_ACID_CHANGE=L580P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_49214117_49214247;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    0/1:4,11:15:98.22:240,0,98
20    49214188    rs35976890    C    T    120.52    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.44;MQ0=0;MQRankSum=-1.932;QD=10.96;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=E569;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_49214117_49214247;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    0/1:5,6:11:99:151,0,151
20    49227182    rs1108893    C    G    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
20    49227294    rs4811083    T    C    90.12    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.466;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=6.93;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    0/1:9,4:13:99:120,0,303
20    49227500    rs41307179    C    T    233.37    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.612;DB;DP=40;Dels=0.0;FS=4.028;HRun=0;HaplotypeScore=0.734;MQ=56.45;MQ0=0;MQRankSum=-0.635;QD=5.83;ReadPosRankSum=-1.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    0/1:28,12:40:99:263,0,841
20    49227796    rs78646412    C    T    354.03    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DB;DP=19;Dels=0.0;FS=5.927;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.482;QD=18.63;ReadPosRankSum=-0.658;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    0/1:6,13:19:99:384,0,195
20    49227873    rs41307181    C    T    124.52    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=13.84;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    0/1:4,5:9:99:155,0,114
20    49236475    rs117180526    G    A    331.38    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.904;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.81;MQ0=0;MQRankSum=-0.762;QD=8.5;ReadPosRankSum=2.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM65C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000045083    GT:AD:DP:GQ:PL    0/1:26,13:39:99:361,0,725
20    49367039    rs55948332    A    G    158.93    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.549;DB;DP=24;Dels=0.0;FS=2.299;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.097;QD=6.62;ReadPosRankSum=-1.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARD6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396039    GT:AD:DP:GQ:PL    0/1:15,9:24:99:189,0,507
20    49507892    rs761240    T    G    164.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=23.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADNP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534467    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:198,15,0
20    49509184    rs17790938    G    A    473.27    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=1.13;DB;DP=49;Dels=0.0;FS=2.551;HRun=0;HaplotypeScore=0.9332;MQ=59.15;MQ0=0;MQRankSum=0.612;QD=9.66;ReadPosRankSum=-0.612;SNPEFF_AMINO_ACID_CHANGE=G689;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_49505585_49511049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADNP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349014    GT:AD:DP:GQ:PL    0/1:31,18:49:99:503,0,900
20    49551780    rs33917565    T    TA    529.38    PASS    AB=0.742;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=72;FS=7.846;HRun=12;HaplotypeScore=347.7906;IndelType=I;MQ=56.76;MQ0=0;MQRankSum=0.525;QD=7.35;ReadPosRankSum=-3.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413082    GT:AD:DP:GQ:PL    0/1:47,23:72:99:568,0,565
20    49575334    rs2281282    A    C    387.42    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.08;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=0.207;QD=13.36;ReadPosRankSum=-0.115;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DPM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371582    GT:AD:DP:GQ:PL    0/1:15,14:29:99:417,0,421
20    49620783    rs1054268    G    T    1035.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.39;SNPEFF_AMINO_ACID_CHANGE=I445;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_49620193_49621343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371571    GT:AD:DP:GQ:PL    1/1:0,31:31:81.26:1068,81,0
20    49621149    rs6122993    T    C    84.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_AMINO_ACID_CHANGE=A323;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_49620193_49621343;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371571    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
20    49626971    rs6122994    C    T    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371571    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
20    50008006    rs71908729    A    AG    240.45    PASS    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=38;FS=0.0;HRun=9;HaplotypeScore=163.6557;IndelType=I;MQ=56.19;MQ0=0;MQRankSum=0.301;QD=6.33;ReadPosRankSum=0.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371564    GT:AD:DP:GQ:PL    0/1:24,14:38:99:279,0,289
20    50015107    rs11477791    TAA    T    84.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;FS=0.0;HRun=13;HaplotypeScore=36.3808;IndelType=D;MQ=57.79;MQ0=0;MQRankSum=0.322;QD=10.61;ReadPosRankSum=-1.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371564    GT:AD:DP:GQ:PL    0/1:0,5:8:3.21:123,0,3
20    50071258    rs228840    A    G    2127.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFATC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371564    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2161,157,0
20    50230462    rs2235863    A    G    711.45    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=2.037;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.41;MQ0=0;MQRankSum=-1.409;QD=13.42;ReadPosRankSum=0.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:30,23:53:99:741,0,1076
20    50234151    rs13044000    G    T    142.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=2.632;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.583;QD=11.88;ReadPosRankSum=-0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:6,6:12:99:172,0,168
20    50238545    rs2235862    A    G    206.51    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.973;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=58.63;MQ0=0;MQRankSum=2.069;QD=12.15;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:9,8:17:99:236,0,247
20    50241714    rs2235859    C    A    241.65    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.528;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=1.232;QD=11.51;ReadPosRankSum=-0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:11,10:21:99:272,0,348
20    50244098    rs2426317    T    C    2806.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4584;MQ=55.36;MQ0=0;QD=28.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,97:98:99:2840,229,0
20    50255762    rs2426333    T    C    907.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,24:24:69.23:941,69,0
20    50256107    rs2426334    T    C    617.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:650,48,0
20    50286484    rs5841856    T    TA    762.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=11;HaplotypeScore=98.7216;IndelType=I;MQ=58.11;MQ0=0;QD=23.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:3,27:32:80.99:805,81,0
20    50287402    rs761377    A    G    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
20    50287736    rs2255341    C    T    1493.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=S230;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50287654_50287796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1526,117,0
20    50287790    rs2255342    A    G    1397.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=R212;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50287654_50287796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1431,108,0
20    50287837    rs148268185    G    T    183.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.077;DB;DP=27;Dels=0.0;FS=2.287;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.54;QD=6.81;ReadPosRankSum=-0.283;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:18,9:27:99:214,0,594
20    50287925    rs2255358    A    G    292.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
20    50290654    rs6091346    T    C    770.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,22:22:60.19:804,60,0
20    50307132    rs6126303    C    T    107.26    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=11.92;ReadPosRankSum=-0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,182
20    50307372    rs45585740    G    C    1234.18    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.583;DB;DP=105;Dels=0.0;FS=3.009;HRun=0;HaplotypeScore=2.7223;MQ=59.78;MQ0=0;MQRankSum=0.622;QD=11.75;ReadPosRankSum=-0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:57,47:105:99:1264,0,1858
20    50307502    rs4811222    G    C    210.48    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=13.16;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:7,9:16:99:240,0,246
20    50310483    .    A    ATC    1175.91    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=0;HaplotypeScore=62.7154;IndelType=I;MQ=57.3;MQ0=0;QD=53.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:2,20:22:63.22:1218,63,0
20    50314052    rs58432772    C    T    514.10    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.781;DB;DP=52;Dels=0.0;FS=1.575;HRun=0;HaplotypeScore=1.5253;MQ=60.0;MQ0=0;MQRankSum=0.781;QD=9.89;ReadPosRankSum=-0.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:32,20:52:99:544,0,973
20    50314078    rs13044892    G    A    670.06    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.145;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=59.51;MQ0=0;MQRankSum=-0.235;QD=17.63;ReadPosRankSum=0.793;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:17,21:38:99:700,0,539
20    50329416    rs1205698    T    C    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
20    50329704    rs1205699    G    A    115.73    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.15;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    0/1:1,4:5:27.96:146,0,28
20    50342285    rs1205708    A    G    304.46    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.341;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=13.84;ReadPosRankSum=0.824;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477492    GT:AD:DP:GQ:PL    0/1:12,10:22:99:334,0,410
20    50342555    rs1205709    C    T    281.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311637    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
20    50406985    rs13043248    G    A    236.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.655;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=10.75;ReadPosRankSum=0.599;SNPEFF_AMINO_ACID_CHANGE=T679;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50406561_50408891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217086    GT:AD:DP:GQ:PL    0/1:11,11:22:99:267,0,252
20    50407162    rs6021437    T    C    287.96    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.685;DB;DP=34;Dels=0.0;FS=1.423;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.171;QD=8.47;ReadPosRankSum=-0.559;SNPEFF_AMINO_ACID_CHANGE=T620;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50406561_50408891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217086    GT:AD:DP:GQ:PL    0/1:22,12:34:99:318,0,693
20    50407502    rs6126344    A    C    1310.90    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.958;DB;DP=82;Dels=0.0;FS=5.881;HRun=1;HaplotypeScore=2.6592;MQ=59.44;MQ0=0;MQRankSum=0.827;QD=15.99;ReadPosRankSum=2.49;SNPEFF_AMINO_ACID_CHANGE=L507R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50406561_50408891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217086    GT:AD:DP:GQ:PL    0/1:36,46:82:99:1341,0,1162
20    50407966    rs13038893    C    T    563.38    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.869;DB;DP=41;Dels=0.0;FS=14.225;HRun=0;HaplotypeScore=0.6651;MQ=58.4;MQ0=0;MQRankSum=1.219;QD=13.74;ReadPosRankSum=-0.948;SNPEFF_AMINO_ACID_CHANGE=A352;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50406561_50408891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217086    GT:AD:DP:GQ:PL    0/1:20,21:41:99:593,0,606
20    50408482    rs6013281    A    G    3471.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=N180;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50406561_50408891;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SALL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217086    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3472,289,0
20    50705211    rs2273382    A    G    936.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.5929;MQ=58.64;MQ0=0;QD=30.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477786    GT:AD:DP:GQ:PL    1/1:0,31:31:78.24:970,78,0
20    50705584    rs973341    C    T    2234.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=59.29;MQ0=0;QD=34.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361387    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2268,175,0
20    50713652    rs10715971    TA    T    488.71    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=4.837;DB;DP=73;FS=6.477;HRun=10;HaplotypeScore=205.4241;IndelType=D;MQ=59.52;MQ0=0;MQRankSum=-0.54;QD=6.69;ReadPosRankSum=1.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361387    GT:AD:DP:GQ:PL    0/1:44,28:73:99:528,0,1074
20    50713992    rs67043616    AT    A    180.44    QDFilter2    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.513;DB;DP=93;FS=4.03;HRun=18;HaplotypeScore=595.6863;IndelType=D;MQ=53.46;MQ0=0;MQRankSum=2.232;QD=1.94;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361387    GT:AD:DP:GQ:PL    0/1:69,15:93:99:219,0,237
20    50714876    rs7274039    C    T    144.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=16.1;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361387    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,139
20    50734144    rs67451131    C    T    62.61    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=7.83;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361387    GT:AD:DP:GQ:PL    0/1:5,3:8:92.60:93,0,167
20    50734238    rs67904269    T    C    243.74    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.448;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.239;QD=8.7;ReadPosRankSum=1.028;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361387    GT:AD:DP:GQ:PL    0/1:18,10:28:99:274,0,578
20    50734367    rs2180366    T    C    70.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361387    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,147
20    50768672    rs3838014    GT    G    194.96    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=3.484;DB;DP=25;FS=2.114;HRun=7;HaplotypeScore=85.8596;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.556;QD=7.8;ReadPosRankSum=0.908;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371516    GT:AD:DP:GQ:PL    0/1:15,10:25:99:234,0,450
20    50769183    rs3746415    G    A    167.36    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.456;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.532;QD=7.97;ReadPosRankSum=-0.152;SNPEFF_AMINO_ACID_CHANGE=A358;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50767820_50769967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546083    GT:AD:DP:GQ:PL    0/1:11,9:21:99:197,0,284
20    50769379    rs3746414    C    T    240.87    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.935;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;MQRankSum=1.588;QD=14.17;ReadPosRankSum=0.722;SNPEFF_AMINO_ACID_CHANGE=S293N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50767820_50769967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000546083    GT:AD:DP:GQ:PL    0/1:9,8:17:99:271,0,281
20    50769549    rs3746413    A    G    517.59    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.601;DB;DP=37;Dels=0.0;FS=1.378;HRun=0;HaplotypeScore=0.8321;MQ=59.38;MQ0=0;MQRankSum=-0.41;QD=13.99;ReadPosRankSum=-0.137;SNPEFF_AMINO_ACID_CHANGE=H236;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_50767820_50769967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000546083    GT:AD:DP:GQ:PL    0/1:18,19:37:99:548,0,593
20    50776522    rs6021761    A    C    211.20    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=58.84;MQ0=0;MQRankSum=-1.693;QD=10.56;ReadPosRankSum=-0.289;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461898    GT:AD:DP:GQ:PL    0/1:9,11:20:99:241,0,287
20    50777026    rs3818198    A    G    174.24    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=3.078;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.543;QD=8.3;ReadPosRankSum=0.905;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216923    GT:AD:DP:GQ:PL    0/1:13,8:21:99:204,0,437
20    50781298    rs112112888    T    TAA    200.65    PASS    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=30;FS=0.0;HRun=11;HaplotypeScore=151.512;IndelType=I;MQ=56.23;MQ0=1;MQRankSum=-2.662;QD=6.47;ReadPosRankSum=-0.501;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_20_50781234_50781315;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000371516    GT:AD:DP:GQ:PL    0/1:23,6:30:99:240,0,255
20    50782343    rs6021772    C    A    289.87    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.553;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.08;QD=11.15;ReadPosRankSum=-0.501;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZFP64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216923    GT:AD:DP:GQ:PL    0/1:16,10:26:99:320,0,533
20    51870336    rs739869    G    C    330.08    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.523;DB;DP=23;Dels=0.0;FS=6.701;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.892;QD=14.35;ReadPosRankSum=0.769;SNPEFF_AMINO_ACID_CHANGE=R110S;SNPEFF_CODON_CHANGE=agG/agC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_51870038_51873111;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSHZ2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329613    GT:AD:DP:GQ:PL    0/1:12,11:23:99:360,0,399
20    51870843    .    C    T    793.82    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.04;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.409;QD=13.69;ReadPosRankSum=-1.578;SNPEFF_AMINO_ACID_CHANGE=D279;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_51870038_51873111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSHZ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329613    GT:AD:DP:GQ:PL    0/1:32,26:58:99:824,0,987
20    51870849    rs739870    T    C    644.90    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.195;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.484;QD=11.31;ReadPosRankSum=-1.434;SNPEFF_AMINO_ACID_CHANGE=F281;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_51870038_51873111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSHZ2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329613    GT:AD:DP:GQ:PL    0/1:32,25:57:99:675,0,1002
20    52185814    rs4602270    C    A    411.85    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=35;Dels=0.0;FS=1.608;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.149;QD=11.77;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302342    GT:AD:DP:GQ:PL    0/1:18,17:35:99:442,0,571
20    52186784    rs2766672    A    G    721.68    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.433;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=0.397;QD=11.1;ReadPosRankSum=0.209;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF217;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302342    GT:AD:DP:GQ:PL    0/1:35,30:65:99:752,0,1139
20    52561372    rs2072241    A    G    480.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.812;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=1.042;QD=12.02;ReadPosRankSum=1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371440    GT:AD:DP:GQ:PL    0/1:24,16:40:99:511,0,770
20    52561469    rs1055246    A    G    1480.34    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.054;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=59.53;MQ0=0;MQRankSum=0.924;QD=14.95;ReadPosRankSum=-0.786;SNPEFF_AMINO_ACID_CHANGE=S249P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_52561162_52561535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434986    GT:AD:DP:GQ:PL    0/1:45,54:99:99:1510,0,1264
20    52583181    rs2158977    A    G    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371435    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:68,6,0
20    52611427    rs11471603    TACACACAC    T    1407.91    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=4.769;DB;DP=61;FS=0.0;HRun=0;HaplotypeScore=486.796;IndelType=D;MQ=48.86;MQ0=0;MQRankSum=-4.574;QD=23.08;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371435    GT:AD:DP:GQ:PL    0/1:38,22:61:99:1447,0,3135
20    52612144    rs208380    A    C    33.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371435    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
20    52645534    rs466264    T    C    191.75    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.381;DB;DP=22;Dels=0.0;FS=6.864;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.038;QD=8.72;ReadPosRankSum=0.416;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371435    GT:AD:DP:GQ:PL    0/1:10,12:22:99:222,0,242
20    52674537    .    A    AT    55.18    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DP=11;FS=0.0;HRun=15;HaplotypeScore=65.3468;IndelType=I;MQ=50.96;MQ0=0;MQRankSum=-0.851;QD=5.02;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371435    GT:AD:DP:GQ:PL    0/1:6,5:11:60.11:94,0,60
20    52674615    rs465184    A    G    283.28    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.564;DB;DP=21;Dels=0.0;FS=7.911;HRun=1;HaplotypeScore=0.0;MQ=54.48;MQ0=0;MQRankSum=0.718;QD=13.49;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371435    GT:AD:DP:GQ:PL    0/1:8,13:21:99:313,0,199
20    52675279    .    GA    G    1421.72    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=6.075;DP=98;FS=9.247;HRun=3;HaplotypeScore=252.6562;IndelType=D;MQ=54.25;MQ0=0;MQRankSum=1.747;QD=14.51;ReadPosRankSum=-1.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCAS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371435    GT:AD:DP:GQ:PL    0/1:55,43:98:99:1461,0,2258
20    52774479    rs1977297    C    T    82.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.55;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487593    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:112,0,26
20    52774579    rs1570670    A    G    397.06    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.326;QD=18.05;ReadPosRankSum=-0.326;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487593    GT:AD:DP:GQ:PL    0/1:8,13:21:99:427,0,219
20    52774601    rs2274130    A    G    444.84    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.821;DB;DP=31;Dels=0.0;FS=3.84;HRun=0;HaplotypeScore=0.6651;MQ=58.5;MQ0=0;MQRankSum=0.22;QD=14.35;ReadPosRankSum=-0.981;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487593    GT:AD:DP:GQ:PL    0/1:13,18:31:99:475,0,339
20    52775528    rs2296239    C    T    884.67    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=3.005;DB;DP=64;Dels=0.0;FS=0.983;HRun=0;HaplotypeScore=2.6525;MQ=60.0;MQ0=0;MQRankSum=1.411;QD=13.82;ReadPosRankSum=-0.508;SNPEFF_AMINO_ACID_CHANGE=P233;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_52775496_52775662;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP24A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395954    GT:AD:DP:GQ:PL    0/1:34,30:64:99:915,0,981
20    52775728    rs2296240    A    G    46.14    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.262;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.566;QD=4.19;ReadPosRankSum=-0.715;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487593    GT:AD:DP:GQ:PL    0/1:8,3:11:76.13:76,0,298
20    52779052    rs6127118    G    A    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487593    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
20    52779210    rs6091828    G    T    266.97    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.231;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.033;QD=12.14;ReadPosRankSum=0.099;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP24A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216862    GT:AD:DP:GQ:PL    0/1:12,10:22:99:297,0,404
20    52786219    rs2296241    G    A    789.45    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.272;DB;DP=54;Dels=0.0;FS=10.475;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.459;QD=14.62;ReadPosRankSum=0.164;SNPEFF_AMINO_ACID_CHANGE=A184;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_52786131_52786227;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP24A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216862    GT:AD:DP:GQ:PL    0/1:26,28:54:99:819,0,693
20    52832057    rs6023041    A    G    206.17    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=15.86;ReadPosRankSum=-0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFDN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474326    GT:AD:DP:GQ:PL    0/1:6,7:13:99:236,0,209
20    52832102    rs6013932    C    G    75.56    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.11;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFDN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474326    GT:AD:DP:GQ:PL    0/1:2,3:5:68.47:106,0,68
20    53266929    rs79858797    T    A    578.30    PASS    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=1.17;DB;DP=29;Dels=0.0;FS=2.741;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.711;QD=19.94;ReadPosRankSum=0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOK5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262593    GT:AD:DP:GQ:PL    0/1:10,19:29:99:608,0,323
20    53691454    .    CAGAA    C    648.18    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=0.77;DP=37;FS=5.792;HRun=0;HaplotypeScore=202.4335;IndelType=D;MQ=22.44;MQ0=11;MQRankSum=1.251;QD=10.99;ReadPosRankSum=0.321;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RPL12P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393148    GT:AD:DP:GQ:PL    0/1:32,27:37:99:687,0,1471
20    53691519    rs6098405    C    T    172    MQFilter40;QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.112;DB;DP=88;Dels=0.0;FS=3.264;HRun=1;HaplotypeScore=0.0;MQ=23.9;MQ0=4;MQRankSum=-0.018;QD=1.95;ReadPosRankSum=-0.633;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RPL12P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393148    GT:AD:DP:GQ:PL    0/1:72,16:88:99:202,0,1302
20    53691637    rs9305107    A    C    70.41    MQFilter40;QDFilter2    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.858;DB;DP=62;Dels=0.0;FS=5.398;HRun=0;HaplotypeScore=0.9734;MQ=29.57;MQ0=12;MQRankSum=-4.545;QD=1.14;ReadPosRankSum=-0.195;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=RPL12P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393148    GT:AD:DP:GQ:PL    0/1:31,31:62:99:100,0,740
20    54823779    rs13044293    G    T    5644.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=168;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.45;MQ0=0;QD=33.6;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC3R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243911    GT:AD:DP:GQ:PL    1/1:0,168:168:99:5645,418,0
20    54823805    rs3746619    C    A    2096.54    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=6.574;DB;DP=165;Dels=0.0;FS=2.778;HRun=1;HaplotypeScore=0.9665;MQ=59.58;MQ0=0;MQRankSum=-0.325;QD=12.71;ReadPosRankSum=-0.615;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_20_54823788_54824871;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC3R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243911    GT:AD:DP:GQ:PL    0/1:93,72:165:99:2127,0,2713
20    54824029    rs3827103    G    A    1314.47    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.412;DB;DP=97;Dels=0.0;FS=3.118;HRun=0;HaplotypeScore=3.6373;MQ=58.9;MQ0=0;MQRankSum=-0.004;QD=13.55;ReadPosRankSum=0.654;SNPEFF_AMINO_ACID_CHANGE=V44I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_54823788_54824871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MC3R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243911    GT:AD:DP:GQ:PL    0/1:50,46:97:99:1344,0,1532
20    54945783    rs10485805    A    G    175.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.648;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=11.7;ReadPosRankSum=-1.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441357    GT:AD:DP:GQ:PL    0/1:9,6:15:99:205,0,311
20    54956707    rs6024840    A    G    319.46    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.488;QD=19.97;ReadPosRankSum=1.464;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420474    GT:AD:DP:GQ:PL    0/1:6,10:16:99:349,0,189
20    54959296    rs2298016    G    C    671.21    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.063;QD=12.66;ReadPosRankSum=-1.038;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451915    GT:AD:DP:GQ:PL    0/1:31,22:53:99:701,0,956
20    54961463    rs1047972    T    C    1699.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5661;MQ=59.67;MQ0=0;QD=30.35;SNPEFF_AMINO_ACID_CHANGE=I57V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_54961313_54961589;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312783    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1733,144,0
20    54961541    rs2273535    A    T    305.02    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=1.53;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.444;QD=7.44;ReadPosRankSum=0.953;SNPEFF_AMINO_ACID_CHANGE=F31I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_54961313_54961589;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AURKA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000312783    GT:AD:DP:GQ:PL    0/1:27,14:41:99:335,0,752
20    54974424    rs2426617    C    A    1841.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=35.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSTF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415828    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1875,138,0
20    55028167    rs2870738    G    A    123.47    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=16;Dels=0.0;FS=2.06;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=7.72;ReadPosRankSum=1.02;SNPEFF_AMINO_ACID_CHANGE=R645;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55026875_55028185;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360314    GT:AD:DP:GQ:PL    0/1:11,5:16:99:153,0,354
20    55033476    rs3746623    C    G    733.04    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=0.918;DB;DP=57;Dels=0.0;FS=5.393;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=12.86;ReadPosRankSum=-2.099;SNPEFF_AMINO_ACID_CHANGE=L241;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55033396_55034395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434344    GT:AD:DP:GQ:PL    0/1:29,28:57:99:763,0,896
20    55033635    rs3746624    C    T    175.87    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-2.24;QD=6.51;ReadPosRankSum=-1.397;SNPEFF_AMINO_ACID_CHANGE=N294;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55033396_55034395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434344    GT:AD:DP:GQ:PL    0/1:17,10:27:99:206,0,472
20    55033647    rs3746625    T    C    177.04    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.74;DB;DP=22;Dels=0.0;FS=2.172;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.034;QD=8.05;ReadPosRankSum=-0.58;SNPEFF_AMINO_ACID_CHANGE=R298;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55033396_55034395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434344    GT:AD:DP:GQ:PL    0/1:14,8:22:99:207,0,399
20    55033713    rs3746626    G    A    167.71    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.839;QD=11.18;ReadPosRankSum=-1.485;SNPEFF_AMINO_ACID_CHANGE=T320;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55033396_55034395;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASS4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434344    GT:AD:DP:GQ:PL    0/1:9,6:15:99:198,0,269
20    55035195    rs6099156    T    C    230.63    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.296;QD=23.06;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360314    GT:AD:DP:GQ:PL    0/1:3,7:10:93.01:261,0,93
20    55035365    rs67266356    G    A    300.24    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.643;QD=15.01;ReadPosRankSum=1.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360314    GT:AD:DP:GQ:PL    0/1:10,10:20:99:330,0,298
20    55048283    rs6024901    A    G    263.04    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.532;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.832;MQ=58.84;MQ0=0;MQRankSum=-0.152;QD=13.15;ReadPosRankSum=-0.304;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435342    GT:AD:DP:GQ:PL    0/1:11,9:20:99:293,0,383
20    55048496    rs11471796    T    TGAG    910.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=40.9523;IndelType=I;MQ=49.96;MQ0=0;QD=60.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435342    GT:AD:DP:GQ:PL    1/1:1,14:15:42.14:953,42,0
20    55049908    rs1474890    A    G    392.05    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.132;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.165;QD=17.82;ReadPosRankSum=-0.626;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435342    GT:AD:DP:GQ:PL    0/1:10,12:22:99:422,0,275
20    55051853    rs6024903    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
20    55070268    rs34552628    A    T    267.50    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=0.118;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.354;QD=24.32;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=D230E;SNPEFF_CODON_CHANGE=gaT/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55070258_55070353;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCNT7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243913    GT:AD:DP:GQ:PL    0/1:2,9:11:52.89:297,0,53
20    55071620    rs6014752    T    G    156.63    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=56.35;MQ0=0;MQRankSum=-0.935;QD=12.05;ReadPosRankSum=-0.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023939    GT:AD:DP:GQ:PL    0/1:7,6:13:99:187,0,250
20    55071639    rs6069763    A    G    217.83    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=2.54;QD=13.61;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023939    GT:AD:DP:GQ:PL    0/1:9,7:16:99:248,0,304
20    55072472    rs6024911    A    G    1632.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=30.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000023939    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1666,132,0
20    55088404    rs1059768    A    G    240.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_AMINO_ACID_CHANGE=M171V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55088371_55088484;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000023939    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:273,21,0
20    55108617    rs3209183    C    A    972.81    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.621;DB;DP=61;Dels=0.0;FS=1.01;HRun=1;HaplotypeScore=0.9967;MQ=51.45;MQ0=1;MQRankSum=1.169;QD=15.95;ReadPosRankSum=0.34;SNPEFF_AMINO_ACID_CHANGE=Q74K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55108302_55108646;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf107;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371325    GT:AD:DP:GQ:PL    0/1:29,32:61:99:1003,0,748
20    55111371    rs2296130    G    A    1075.99    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=64;Dels=0.0;FS=2.195;HRun=2;HaplotypeScore=0.5784;MQ=59.05;MQ0=0;MQRankSum=2.632;QD=16.81;ReadPosRankSum=-0.41;SNPEFF_AMINO_ACID_CHANGE=Q131;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_55111228_55111576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf107;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371325    GT:AD:DP:GQ:PL    0/1:27,37:64:99:1106,0,931
20    55206058    rs76263419    C    T    39.84    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFAP2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000201031    GT:AD:DP:GQ:PL    0/1:2,2:4:69.84:70,0,70
20    55758655    rs6070015    A    G    463.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395863    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:497,39,0
20    55800721    rs2180780    G    C    36.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.19;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395863    GT:AD:DP:GQ:PL    0/1:2,2:4:64.33:67,0,64
20    55800937    rs6070031    C    T    164.11    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.096;DB;DP=19;Dels=0.0;FS=8.512;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=8.64;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395863    GT:AD:DP:GQ:PL    0/1:13,6:19:99:194,0,415
20    55803149    rs7352741    C    T    262.26    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.807;DB;DP=21;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.604;QD=12.49;ReadPosRankSum=-1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395863    GT:AD:DP:GQ:PL    0/1:9,12:21:99:292,0,317
20    55910542    rs3764674    T    G    333.92    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.874;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.07;MQ0=0;MQRankSum=-0.192;QD=13.36;ReadPosRankSum=0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345868    GT:AD:DP:GQ:PL    0/1:11,14:25:99:364,0,363
20    55911119    rs6099553    C    G    40.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.77;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPO11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000345868    GT:AD:DP:GQ:PL    0/1:3,3:6:70.60:71,0,98
20    55929881    rs4811837    T    C    299.54    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=59.28;MQ0=0;MQRankSum=-0.496;QD=9.36;ReadPosRankSum=-1.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTRNR2L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543500    GT:AD:DP:GQ:PL    0/1:17,14:31:99:330,0,536
20    55966947    .    G    A    98.76    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.11;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356208    GT:AD:DP:GQ:PL    0/1:3,4:7:99:129,0,100
20    55967915    rs76198019    C    G    117.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.065;QD=8.38;ReadPosRankSum=-0.968;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356208    GT:AD:DP:GQ:PL    0/1:8,6:14:99:147,0,277
20    55968113    rs439749    G    A    39.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=9.8;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356208    GT:AD:DP:GQ:PL    0/1:2,2:4:69.20:69,0,72
20    55982579    rs3764719    T    C    285.64    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DB;DP=24;Dels=0.0;FS=4.216;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.147;QD=11.9;ReadPosRankSum=-0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356208    GT:AD:DP:GQ:PL    0/1:14,10:24:99:316,0,375
20    56064099    rs116593113    T    C    476.92    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=64;Dels=0.0;FS=5.642;HRun=1;HaplotypeScore=0.0;MQ=44.73;MQ0=4;MQRankSum=-5.702;QD=7.45;ReadPosRankSum=0.954;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HMGB1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522557    GT:AD:DP:GQ:PL    0/1:26,38:64:99:507,0,804
20    56064100    rs116355135    T    C    473.94    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=2.119;DB;DP=63;Dels=0.0;FS=5.702;HRun=1;HaplotypeScore=0.0;MQ=45.36;MQ0=4;MQRankSum=-5.402;QD=7.52;ReadPosRankSum=1.212;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HMGB1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522557    GT:AD:DP:GQ:PL    0/1:26,37:63:99:504,0,788
20    56064157    rs6128051    C    T    503.02    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=1.732;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.05;MQ0=1;MQRankSum=-2.787;QD=17.97;ReadPosRankSum=0.979;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HMGB1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522557    GT:AD:DP:GQ:PL    0/1:10,18:28:99:533,0,330
20    56078690    rs6128059    G    A    766.51    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.781;QD=16.66;ReadPosRankSum=1.316;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422869    GT:AD:DP:GQ:PL    0/1:19,27:46:99:797,0,612
20    56087800    rs41305825    T    C    278.99    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.803;DB;DP=26;Dels=0.0;FS=4.224;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.749;QD=10.73;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=M185V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56087648_56087808;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000502686    GT:AD:DP:GQ:PL    0/1:16,10:26:99:309,0,507
20    56089479    rs6128061    G    C    210.90    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.309;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.0;QD=17.57;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481655    GT:AD:DP:GQ:PL    0/1:5,7:12:99:241,0,126
20    56089629    rs78625079    A    G    960.49    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.145;DB;DP=96;Dels=0.0;FS=2.961;HRun=1;HaplotypeScore=3.5493;MQ=60.0;MQ0=0;MQRankSum=0.828;QD=10.01;ReadPosRankSum=0.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481655    GT:AD:DP:GQ:PL    0/1:56,40:96:99:990,0,1580
20    56089869    rs11086612    GT    G    350.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DB;DP=24;FS=0.0;HRun=12;HaplotypeScore=98.5649;IndelType=D;MQ=60.47;MQ0=0;MQRankSum=0.347;QD=14.59;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481655    GT:AD:DP:GQ:PL    1/1:6,17:24:28.32:392,28,0
20    56090807    rs6025601    A    G    871.86    PASS    AB=0.573;AC=1;AF=0.50;AN=2;BaseQRankSum=1.628;DB;DP=89;Dels=0.0;FS=1.838;HRun=0;HaplotypeScore=2.5873;MQ=59.74;MQ0=0;MQRankSum=1.529;QD=9.8;ReadPosRankSum=-0.04;SNPEFF_AMINO_ACID_CHANGE=D119;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56090770_56090890;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000502686    GT:AD:DP:GQ:PL    0/1:51,38:89:99:902,0,1595
20    56098070    rs73628137    GA    G    418.84    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=3.256;DB;DP=43;FS=3.716;HRun=5;HaplotypeScore=109.9333;IndelType=D;MQ=60.75;MQ0=0;MQRankSum=1.012;QD=9.74;ReadPosRankSum=-1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243914    GT:AD:DP:GQ:PL    0/1:26,17:43:99:458,0,821
20    56098733    rs6025606    T    C    3316.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=59.31;MQ0=0;QD=35.28;SNPEFF_AMINO_ACID_CHANGE=T177A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56098719_56099272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243914    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3317,244,0
20    56099114    rs6070128    C    G    1710.22    PASS    AB=0.461;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=115;Dels=0.0;FS=0.822;HRun=2;HaplotypeScore=2.4658;MQ=59.4;MQ0=0;MQRankSum=-0.936;QD=14.87;ReadPosRankSum=2.216;SNPEFF_AMINO_ACID_CHANGE=E50Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56098719_56099272;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000243914    GT:AD:DP:GQ:PL    0/1:53,62:115:99:1740,0,1628
20    56099305    rs11699220    G    A    1076.57    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.144;DB;DP=75;Dels=0.0;FS=4.64;HRun=0;HaplotypeScore=3.2092;MQ=58.13;MQ0=0;MQRankSum=0.892;QD=14.35;ReadPosRankSum=2.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243914    GT:AD:DP:GQ:PL    0/1:35,40:75:99:1107,0,1045
20    56099387    rs73178734    C    T    49.79    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.37;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=4.15;ReadPosRankSum=0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTCFL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243914    GT:AD:DP:GQ:PL    0/1:9,3:12:79.79:80,0,326
20    56136536    rs1042521    A    G    1089.88    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=3.798;DB;DP=105;Dels=0.0;FS=0.804;HRun=0;HaplotypeScore=0.0;MQ=59.78;MQ0=0;MQRankSum=-0.319;QD=10.38;ReadPosRankSum=-1.117;SNPEFF_AMINO_ACID_CHANGE=L23;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56136428_56136691;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319441    GT:AD:DP:GQ:PL    0/1:64,41:105:99:1120,0,1905
20    56136954    rs2236744    G    C    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319441    GT:AD:DP:GQ:PL    0/1:2,2:4:68.77:70,0,69
20    56137010    rs17847710    C    G    36.83    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=6.14;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319441    GT:AD:DP:GQ:PL    0/1:4,2:6:66.82:67,0,148
20    56137687    rs1040566    A    C    103.24    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=12.91;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475833    GT:AD:DP:GQ:PL    0/1:3,5:8:99:133,0,99
20    56137798    rs1062600    G    A    351.39    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.313;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.129;QD=10.65;ReadPosRankSum=0.35;SNPEFF_AMINO_ACID_CHANGE=S151;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56137752_56137955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319441    GT:AD:DP:GQ:PL    0/1:20,13:33:99:381,0,553
20    56137807    rs1042523    A    G    325.25    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.627;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-1.172;QD=9.57;ReadPosRankSum=-0.052;SNPEFF_AMINO_ACID_CHANGE=S154;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56137752_56137955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319441    GT:AD:DP:GQ:PL    0/1:20,14:34:99:355,0,590
20    56137834    rs1062601    A    G    286.73    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.898;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.092;QD=10.24;ReadPosRankSum=-1.237;SNPEFF_AMINO_ACID_CHANGE=S163;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56137752_56137955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000319441    GT:AD:DP:GQ:PL    0/1:13,14:28:99:317,0,403
20    56137895    rs707555    G    C    904.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.17;SNPEFF_AMINO_ACID_CHANGE=V184L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56137752_56137955;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000319441    GT:AD:DP:GQ:PL    1/1:0,25:25:69.23:937,69,0
20    56138040    rs2070755    G    C    283.23    PASS    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=0.405;DB;DP=34;Dels=0.0;FS=9.171;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=1.546;QD=8.33;ReadPosRankSum=1.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475833    GT:AD:DP:GQ:PL    0/1:23,11:34:99:313,0,773
20    56139403    rs2070756    T    C    1016.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=G248;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56139225_56139669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535860    GT:AD:DP:GQ:PL    1/1:0,31:31:87.21:1050,87,0
20    56139871    rs2179706    C    T    71.24    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.81;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470051    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:101,0,29
20    56139967    rs1023049    C    T    138.47    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=17.31;ReadPosRankSum=-0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470051    GT:AD:DP:GQ:PL    0/1:3,5:8:99:168,0,100
20    56140076    rs66841306    C    CTT    629.79    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.241;DB;DP=57;FS=1.273;HRun=9;HaplotypeScore=185.0992;IndelType=I;MQ=60.57;MQ0=0;MQRankSum=1.645;QD=11.05;ReadPosRankSum=-1.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470051    GT:AD:DP:GQ:PL    0/1:35,20:57:99:669,0,885
20    56140980    rs1042531    T    G    60.97    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=12.19;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470051    GT:AD:DP:GQ:PL    0/1:2,3:5:68.42:91,0,68
20    56179875    rs8118279    A    G    355.81    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.154;DB;DP=25;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.154;QD=14.23;ReadPosRankSum=-0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343535    GT:AD:DP:GQ:PL    0/1:11,14:25:99:386,0,390
20    56185303    rs41275648    G    A    2511.02    PASS    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.109;DB;DP=177;Dels=0.0;FS=2.721;HRun=0;HaplotypeScore=5.7792;MQ=59.08;MQ0=0;MQRankSum=0.856;QD=14.19;ReadPosRankSum=0.468;SNPEFF_AMINO_ACID_CHANGE=A257V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56185205_56185423;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395822    GT:AD:DP:GQ:PL    0/1:88,89:177:99:2541,0,2684
20    56186884    rs2865394    T    C    288.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.19;SNPEFF_AMINO_ACID_CHANGE=Q183R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56186783_56186986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395822    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:321,24,0
20    56227514    rs6025698    T    C    155.97    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.977;DB;DP=12;Dels=0.0;FS=5.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.529;QD=13.0;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56223454_56227654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMEPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265626    GT:AD:DP:GQ:PL    0/1:5,7:12:99:186,0,139
20    56227532    rs6025699    T    C    103.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9494;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=10.33;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=P112;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56223448_56227654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMEPA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347215    GT:AD:DP:GQ:PL    0/1:5,5:10:99:133,0,143
20    56493720    rs186596    T    C    380.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354984.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408080    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:414,30,0
20    56534079    rs447498    A    G    658.81    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.362;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.068;QD=13.18;ReadPosRankSum=-0.127;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP13-379L11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371169    GT:AD:DP:GQ:PL    0/1:28,22:50:99:689,0,946
20    56534389    rs431750    T    A    554.54    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=33;Dels=0.0;FS=1.671;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.276;QD=16.8;ReadPosRankSum=-1.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP13-379L11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371169    GT:AD:DP:GQ:PL    0/1:13,20:33:99:585,0,388
20    56551001    rs16981543    C    T    61.21    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.12;ReadPosRankSum=-0.296;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354984.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408524    GT:AD:DP:GQ:PL    0/1:7,3:10:91.20:91,0,254
20    56551077    rs67417392    A    G    245.65    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.794;DB;DP=25;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.232;QD=9.83;ReadPosRankSum=-0.63;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354984.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408524    GT:AD:DP:GQ:PL    0/1:14,11:25:99:276,0,493
20    56551108    rs67691280    A    T    436.37    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.515;DB;DP=30;Dels=0.0;FS=5.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.811;QD=14.55;ReadPosRankSum=0.894;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354984.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408524    GT:AD:DP:GQ:PL    0/1:14,16:30:99:466,0,467
20    56642592    rs8121142    C    T    1882.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP13-379L11.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441277    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1916,141,0
20    56642716    .    C    T    1513.82    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.489;DP=95;Dels=0.0;FS=19.15;HRun=2;HaplotypeScore=1.86;MQ=59.76;MQ0=0;MQRankSum=-0.378;QD=15.93;ReadPosRankSum=-0.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354984.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408458    GT:AD:DP:GQ:PL    0/1:45,49:95:99:1544,0,1343
20    56642787    rs1334104    T    C    1671.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354984.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408458    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1704,132,0
20    56642887    rs1334105    G    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL354984.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408458    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
20    56726107    rs6070358    C    T    214.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf85;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371168    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:247,18,0
20    56793546    rs583987    A    G    1602.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=31.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457363    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1635,129,0
20    56793706    rs584855    G    A    149.66    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=0.175;DB;DP=23;Dels=0.0;FS=5.647;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.385;QD=6.51;ReadPosRankSum=0.595;SNPEFF_AMINO_ACID_CHANGE=R295C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56793551_56793861;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD60;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457363    GT:AD:DP:GQ:PL    0/1:17,6:23:99:180,0,481
20    56796267    rs521615    C    T    166.43    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.093;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.101;QD=12.8;ReadPosRankSum=-1.093;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457363    GT:AD:DP:GQ:PL    0/1:7,6:13:99:196,0,250
20    56807969    rs3818744    A    G    1213.49    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.152;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7876;MQ=59.5;MQ0=0;MQRankSum=-0.73;QD=13.19;ReadPosRankSum=0.521;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467784    GT:AD:DP:GQ:PL    0/1:47,45:92:99:1243,0,1360
20    56820702    rs595292    G    T    163.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
20    56820880    rs3746406    C    T    401.36    PASS    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=37;Dels=0.0;FS=5.123;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.207;QD=10.85;ReadPosRankSum=-1.066;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462333    GT:AD:DP:GQ:PL    0/1:21,16:37:99:431,0,626
20    56821127    rs3746405    A    G    636.81    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.786;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=16.33;ReadPosRankSum=-1.256;SNPEFF_AMINO_ACID_CHANGE=C350R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56820802_56821308;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:15,24:39:99:667,0,501
20    56822236    rs1541117    C    A    415.10    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.997;DB;DP=32;Dels=0.0;FS=3.452;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=0.179;QD=12.97;ReadPosRankSum=-0.814;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462333    GT:AD:DP:GQ:PL    0/1:18,14:32:99:445,0,633
20    56822536    rs4811972    G    A    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=L236;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_56822378_56822562;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:74,0,34
20    56823390    rs11471230    GTTTT    G    180.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=8;HaplotypeScore=38.627;IndelType=D;MQ=67.64;MQ0=0;QD=22.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    1/1:2,6:8:18.04:223,18,0
20    56825826    rs2282205    A    C    315.82    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.735;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.76;QD=15.79;ReadPosRankSum=-1.368;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:9,11:20:99:346,0,323
20    56826934    rs6064631    T    A    789.15    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=95;Dels=0.0;FS=2.712;HRun=6;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.809;QD=8.31;ReadPosRankSum=-1.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:50,45:95:99:819,0,1502
20    56838389    rs6128295    A    G    61.71    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.001;DB;DP=17;Dels=0.0;FS=2.667;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=3.63;ReadPosRankSum=1.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:13,4:17:91.71:92,0,446
20    56846580    rs6015238    T    A    188.62    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.802;DB;DP=36;Dels=0.0;FS=1.775;HRun=7;HaplotypeScore=0.7887;MQ=59.36;MQ0=0;MQRankSum=-0.449;QD=5.24;ReadPosRankSum=-1.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:21,15:36:99:219,0,725
20    56861247    rs6070410    G    A    101.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-0.421;QD=12.74;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,136
20    56861637    rs6026181    A    G    228.33    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=0.048;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.337;QD=13.43;ReadPosRankSum=-0.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:8,9:17:99:258,0,266
20    56884186    rs483569    T    G    85.02    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.909;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=6.07;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PPP4R1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244070    GT:AD:DP:GQ:PL    0/1:10,4:14:99:115,0,314
20    56886062    rs542165    A    G    371.23    PASS    AB=0.651;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.14;DB;DP=43;Dels=0.0;FS=1.619;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.675;QD=8.63;ReadPosRankSum=-1.363;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244040    GT:AD:DP:GQ:PL    0/1:28,15:43:99:401,0,859
20    56918598    rs501253    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244040    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
20    56928207    rs519141    G    C    77.80    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=11.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244040    GT:AD:DP:GQ:PL    0/1:4,3:7:99:108,0,139
20    57009796    rs2234487    C    T    143.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.259;QD=11.96;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAPB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395802    GT:AD:DP:GQ:PL    0/1:6,6:12:99:174,0,206
20    57042171    rs148291923    C    G    351.74    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.817;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=56.88;MQ0=0;MQRankSum=-1.007;QD=10.99;ReadPosRankSum=1.045;SNPEFF_AMINO_ACID_CHANGE=Q244H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57042162_57042714;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371149    GT:AD:DP:GQ:PL    0/1:18,14:32:99:382,0,457
20    57045667    rs1980576    T    C    394.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_AMINO_ACID_CHANGE=T62;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57045665_57045803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371149    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:428,33,0
20    57045765    rs3946003    A    G    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_AMINO_ACID_CHANGE=C30R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57045665_57045803;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APCDD1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371149    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
20    57180009    rs6026398    A    G    814.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=RP5-907D15.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525424    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:848,66,0
20    57244493    rs2296524    G    A    439.53    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.208;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=59.11;MQ0=0;MQRankSum=0.208;QD=16.9;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=Q122;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57244347_57244509;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438253    GT:AD:DP:GQ:PL    0/1:11,15:26:99:470,0,312
20    57245425    rs4810142    G    A    155.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STX16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412911    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:188,15,0
20    57266749    rs72218500    CTTTTT    C    141.11    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.049;DB;DP=19;FS=0.0;HRun=21;HaplotypeScore=244.158;IndelType=D;MQ=41.32;MQ0=0;MQRankSum=0.146;QD=7.43;ReadPosRankSum=-0.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525817    GT:AD:DP:GQ:PL    0/1:8,5:19:99:180,0,452
20    57266781    rs6128402    C    T    445.68    HaplotypeScoreFilter13    AB=0.321;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=15.0874;MQ=48.05;MQ0=0;MQRankSum=-0.711;QD=14.86;ReadPosRankSum=0.237;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:9,19:30:25.87:476,0,26
20    57266913    rs6123823    T    C    1420.03    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.667;DB;DP=91;Dels=0.0;FS=11.194;HRun=2;HaplotypeScore=1.7273;MQ=57.15;MQ0=0;MQRankSum=-0.231;QD=15.6;ReadPosRankSum=-0.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000525817    GT:AD:DP:GQ:PL    0/1:37,54:91:99:1450,0,968
20    57268569    rs6015339    G    T    81.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
20    57268867    rs3746396    C    A    540.36    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.807;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=-0.284;QD=14.6;ReadPosRankSum=-0.886;SNPEFF_AMINO_ACID_CHANGE=T27;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57268793_57268978;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000525817    GT:AD:DP:GQ:PL    0/1:15,22:37:99:570,0,348
20    57268994    rs6100166    G    C    80.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=11.5;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:2,5:7:63.25:110,0,63
20    57273885    rs2296526    T    C    450.29    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.976;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.535;QD=19.58;ReadPosRankSum=0.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:9,14:23:99:480,0,260
20    57274151    rs2296528    G    C    105.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.05;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:3,4:7:90.40:135,0,90
20    57275949    rs6070554    A    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=12.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
20    57290347    rs6026468    C    G    128.50    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=18.36;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=L465V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57290224_57290606;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000525817    GT:AD:DP:GQ:PL    0/1:2,5:7:42.05:158,0,42
20    57292888    rs2426776    G    A    255.07    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.935;DB;DP=17;Dels=0.0;FS=1.822;HRun=0;HaplotypeScore=2.6605;MQ=60.0;MQ0=0;MQRankSum=0.625;QD=15.0;ReadPosRankSum=0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:8,9:17:99:285,0,167
20    57293089    rs6026470    A    G    374.21    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.325;DB;DP=39;Dels=0.0;FS=1.342;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=9.6;ReadPosRankSum=-1.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:22,17:39:99:404,0,685
20    57293118    rs2426777    T    C    476.93    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.95;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.27;MQ0=0;MQRankSum=1.264;QD=11.92;ReadPosRankSum=0.068;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:22,18:40:99:507,0,711
20    57293124    rs10470038    A    AG    698.31    PASS    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=5.376;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=217.7186;IndelType=I;MQ=60.25;MQ0=0;MQRankSum=-0.318;QD=15.87;ReadPosRankSum=1.055;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:26,18:44:99:737,0,869
20    57293350    rs12480759    G    T    97.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=16.21;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPEPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356091    GT:AD:DP:GQ:PL    0/1:2,4:6:27.97:127,0,28
20    57415110    rs1800900    A    G    499.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.081;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.859;QD=15.15;ReadPosRankSum=1.356;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419558    GT:AD:DP:GQ:PL    0/1:11,22:33:99:530,0,339
20    57415455    rs1800902    C    T    795.08    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.681;DB;DP=63;Dels=0.0;FS=2.177;HRun=0;HaplotypeScore=1.8583;MQ=59.34;MQ0=0;MQRankSum=-0.754;QD=12.62;ReadPosRankSum=-0.242;SNPEFF_AMINO_ACID_CHANGE=P19;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57415399_57415941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000453292    GT:AD:DP:GQ:PL    0/1:35,28:63:99:825,0,1002
20    57415962    rs1800904    C    T    222.64    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=0.715;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.715;QD=20.24;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313949    GT:AD:DP:GQ:PL    0/1:3,8:11:55.32:253,0,55
20    57415967    rs41305799    G    A    190.71    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.715;QD=17.34;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313949    GT:AD:DP:GQ:PL    0/1:3,8:11:93.80:221,0,94
20    57415995    rs1800905    A    G    38.62    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=1.231;QD=7.72;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313949    GT:AD:DP:GQ:PL    0/1:2,3:5:59.78:69,0,60
20    57428215    rs79335353    T    G    66.99    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=11.16;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313949    GT:AD:DP:GQ:PL    0/1:2,3:6:67.83:97,0,68
20    57429627    rs61749698    C    A    180.98    MQFilter40    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.634;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=11.6299;MQ=33.28;MQ0=0;MQRankSum=0.244;QD=6.24;ReadPosRankSum=-0.83;SNPEFF_AMINO_ACID_CHANGE=P373T;SNPEFF_CODON_CHANGE=Ccg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57428511_57430388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000306120    GT:AD:DP:GQ:PL    0/1:18,10:29:99:211,0,118
20    57430477    rs73306256    C    G    65.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=16.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306120    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:97,9,0
20    57430568    rs75029190    A    T    39.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=6.53;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306120    GT:AD:DP:GQ:PL    0/1:2,3:5:30.98:69,0,31
20    57474720    rs137883167    GCA    G    142.93    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;FS=8.451;HRun=0;HaplotypeScore=22.0817;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=20.42;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265620    GT:AD:DP:GQ:PL    0/1:2,5:7:83.25:182,0,83
20    57475191    rs13831    A    G    84.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000265620    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
20    57478448    rs2295583    A    T    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338783    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    57478807    rs7121    C    T    905.12    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.595;DB;DP=72;Dels=0.0;FS=0.9;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.946;QD=12.57;ReadPosRankSum=-2.012;SNPEFF_AMINO_ACID_CHANGE=I116;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57478727_57478846;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000265620    GT:AD:DP:GQ:PL    0/1:40,32:72:99:935,0,1191
20    57484085    rs919196    T    C    1204.36    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=4.387;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.68;MQ0=0;MQRankSum=-0.377;QD=16.73;ReadPosRankSum=1.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349036    GT:AD:DP:GQ:PL    0/1:36,36:72:99:1234,0,1128
20    57485611    rs234628    T    C    217.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNAS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464788    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:250,21,0
20    57556295    rs151333    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344018    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
20    57562102    rs2273359    C    G    113.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.21;ReadPosRankSum=1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464363    GT:AD:DP:GQ:PL    0/1:4,4:8:99:144,0,123
20    57564489    rs41314904    G    A    1447.87    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=6.009;DB;DP=105;Dels=0.0;FS=1.944;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.443;QD=13.79;ReadPosRankSum=1.359;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464363    GT:AD:DP:GQ:PL    0/1:58,47:105:99:1478,0,1491
20    57565943    rs163782    G    C    2514.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=31.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217131    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2547,196,0
20    57566637    rs149265    C    T    75.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.62;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217131    GT:AD:DP:GQ:PL    0/1:2,4:6:56.18:106,0,56
20    57569816    rs7341    G    T    189.20    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.156;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.634;QD=8.6;ReadPosRankSum=0.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217131    GT:AD:DP:GQ:PL    0/1:15,7:22:99:219,0,517
20    57570568    rs13720    G    A    169.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488395    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
20    57570854    rs3787492    G    A    428.89    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.302;DB;DP=32;Dels=0.0;FS=4.151;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.793;QD=13.4;ReadPosRankSum=1.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSZ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488395    GT:AD:DP:GQ:PL    0/1:15,17:32:99:459,0,387
20    57571763    rs9760    A    G    1354.49    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.436;DB;DP=83;Dels=0.0;FS=5.079;HRun=1;HaplotypeScore=1.4105;MQ=58.88;MQ0=0;MQRankSum=2.806;QD=16.32;ReadPosRankSum=-1.063;SNPEFF_AMINO_ACID_CHANGE=S244;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57571694_57571856;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217131    GT:AD:DP:GQ:PL    0/1:37,46:83:99:1384,0,1034
20    57572614    rs862018    T    C    393.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.439;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.879;QD=14.59;ReadPosRankSum=0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344018    GT:AD:DP:GQ:PL    0/1:12,15:27:99:424,0,374
20    57572675    rs163785    A    G    919.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=Y207;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57572658_57572808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTSZ;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217131    GT:AD:DP:GQ:PL    1/1:0,30:30:78.22:953,78,0
20    57572839    rs2295357    G    T    314.66    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=27;Dels=0.0;FS=4.678;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.098;QD=11.65;ReadPosRankSum=-0.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TH1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344018    GT:AD:DP:GQ:PL    0/1:15,12:27:99:345,0,463
20    57599016    rs163777    T    G    3434.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5253;MQ=59.6;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=T178;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57598760_57601709;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217133    GT:AD:DP:GQ:PL    1/1:0,104:104:99:3435,268,0
20    57599402    rs6070697    G    A    507.52    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.192;DB;DP=40;Dels=0.0;FS=12.75;HRun=0;HaplotypeScore=0.9578;MQ=59.42;MQ0=0;MQRankSum=0.301;QD=12.69;ReadPosRankSum=0.082;SNPEFF_AMINO_ACID_CHANGE=R307H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57598760_57601709;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217133    GT:AD:DP:GQ:PL    0/1:23,17:40:99:538,0,701
20    57610059    rs151358    C    A    305.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.077;DB;DP=18;Dels=0.0;FS=2.218;HRun=1;HaplotypeScore=0.9789;MQ=58.71;MQ0=0;MQRankSum=0.983;QD=16.95;ReadPosRankSum=1.264;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466051    GT:AD:DP:GQ:PL    0/1:6,12:18:99:335,0,197
20    57612390    rs151359    C    G    584.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466051    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:618,45,0
20    57613373    rs151360    T    C    70.87    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.12;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLMO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355937    GT:AD:DP:GQ:PL    0/1:4,3:7:99:101,0,145
20    57767939    rs184790538    T    G    75.82    FSFilter60;QDFilter2    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.627;DB;DP=98;Dels=0.0;FS=87.803;HRun=2;HaplotypeScore=8.345;MQ=57.12;MQ0=0;MQRankSum=-0.072;QD=0.77;ReadPosRankSum=1.613;SNPEFF_AMINO_ACID_CHANGE=V622G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57766075_57769812;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF831;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371030    GT:AD:DP:GQ:PL    0/1:50,48:98:99:106,0,1522
20    57828879    rs117971071    G    A    726.91    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=6.118;DB;DP=57;Dels=0.0;FS=1.999;HRun=0;HaplotypeScore=0.734;MQ=56.25;MQ0=0;MQRankSum=1.123;QD=12.75;ReadPosRankSum=0.881;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF831;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371030    GT:AD:DP:GQ:PL    0/1:33,24:57:99:757,0,922
20    57828914    rs5842258    T    TC    713.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=3.521;DB;DP=80;FS=1.749;HRun=8;HaplotypeScore=699.5568;IndelType=I;MQ=53.63;MQ0=0;MQRankSum=-0.627;QD=8.92;ReadPosRankSum=-0.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF831;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371030    GT:AD:DP:GQ:PL    1/1:61,19:80:33.05:756,33,0
20    57828923    rs74842893    A    C    1116.76    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.04;FS=0.0;HRun=8;HaplotypeScore=29.6156;MQ=54.34;MQ0=0;QD=13.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF831;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371030    GT:AD:DP:GQ:PL    1/1:0,78:78:93.27:1150,93,0
20    57829301    rs259956    T    C    1387.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.52;SNPEFF_AMINO_ACID_CHANGE=S1513P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_57828953_57834168;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF831;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371030    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1421,105,0
20    57829821    rs79974699    C    CTT    2023.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=1;HaplotypeScore=81.6475;IndelType=I;MQ=60.86;MQ0=0;QD=56.2;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF831;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371030    GT:AD:DP:GQ:PL    1/1:0,36:36:99:2065,108,0
20    58323037    rs1186257    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434923    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    58330128    rs1182477    G    C    78.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355648    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
20    58342130    rs2426831    T    A    89.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355648    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
20    58380845    rs2426843    G    A    214.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355648    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
20    58381410    rs1182525    A    G    188.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355648    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:221,18,0
20    58411441    rs2426849    T    C    192.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355648    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:225,18,0
20    58420336    rs1416388    G    A    316.39    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=26;Dels=0.0;FS=2.054;HRun=0;HaplotypeScore=3.65;MQ=56.35;MQ0=0;MQRankSum=1.341;QD=12.17;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355648    GT:AD:DP:GQ:PL    0/1:14,12:26:99:346,0,387
20    58425413    rs2865768    C    T    1785.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHACTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355648    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1819,135,0
20    58577957    rs6071073    T    C    457.74    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.416;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=1.754;QD=13.87;ReadPosRankSum=-0.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244047    GT:AD:DP:GQ:PL    0/1:15,18:33:99:488,0,475
20    58581863    rs195004    G    C    320.34    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.462;DB;DP=22;Dels=0.0;FS=2.141;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.249;QD=14.56;ReadPosRankSum=-1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244047    GT:AD:DP:GQ:PL    0/1:10,12:22:99:350,0,264
20    58581873    rs195005    A    G    223.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=18;Dels=0.0;FS=2.077;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.144;QD=12.42;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244047    GT:AD:DP:GQ:PL    0/1:9,9:18:99:254,0,237
20    58581937    rs6071081    C    A    71.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244047    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:102,0,30
20    58587484    rs35858953    A    G    302.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244047    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:335,27,0
20    58644995    rs6071100    T    C    902.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.09;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_20_58644888_58645098;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf197;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313426    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:935,69,0
20    58894327    rs6100858    C    T    617.02    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.916;DB;DP=53;Dels=0.0;FS=15.986;HRun=0;HaplotypeScore=2.4673;MQ=60.0;MQ0=0;MQRankSum=-1.104;QD=11.64;ReadPosRankSum=0.709;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-1043L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421257    GT:AD:DP:GQ:PL    0/1:30,23:53:99:647,0,909
20    58894394    rs6100859    C    T    190.38    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.479;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.042;QD=9.52;ReadPosRankSum=0.887;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-1043L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421257    GT:AD:DP:GQ:PL    0/1:13,7:20:99:220,0,316
20    58894407    rs6100860    A    G    166.88    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.578;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.803;QD=8.78;ReadPosRankSum=-0.634;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-1043L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421257    GT:AD:DP:GQ:PL    0/1:12,7:19:99:197,0,397
20    58894423    rs6100861    G    A    163.83    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.705;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.597;QD=10.24;ReadPosRankSum=-1.247;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-1043L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421257    GT:AD:DP:GQ:PL    0/1:10,6:16:99:194,0,352
20    58894807    rs11698042    A    G    160.90    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=17.88;ReadPosRankSum=-1.203;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP5-1043L13.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421257    GT:AD:DP:GQ:PL    0/1:3,6:9:98.55:191,0,99
20    59829847    rs3752252    C    T    3499.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.94;DB;DP=108;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=1.6;QD=32.4;ReadPosRankSum=-1.237;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    1/1:1,106:108:99:3500,226,0
20    60293919    rs2892179    C    A    986.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=R103M;SNPEFF_CODON_CHANGE=aGg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60292562_60294442;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-429E11.3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317652    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:1019,75,0
20    60294246    rs11440327    A    AT    1468.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.0;HRun=11;HaplotypeScore=252.9907;IndelType=I;MQ=60.62;MQ0=0;QD=20.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    1/1:18,48:70:99:1510,153,0
20    60294388    rs6089489    C    T    255.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.57;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_20_60292562_60294442;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP11-429E11.3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317652    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
20    60485327    rs1776237    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    60485627    rs2427240    C    T    784.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=1.6;QD=30.17;ReadPosRankSum=1.2;SNPEFF_AMINO_ACID_CHANGE=D354;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60485478_60485663;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536643    GT:AD:DP:GQ:PL    1/1:1,25:26:63.18:817,63,0
20    60498832    rs11484270    A    AC    185.70    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.532;DB;DP=18;FS=0.0;HRun=4;HaplotypeScore=37.6764;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=1.811;QD=10.32;ReadPosRankSum=-1.087;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    0/1:11,7:18:99:225,0,320
20    60499658    rs2236069    G    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:73,0,30
20    60503350    rs6142884    A    G    1550.26    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.163;DB;DP=106;Dels=0.0;FS=1.641;HRun=1;HaplotypeScore=2.7752;MQ=59.78;MQ0=0;MQRankSum=0.151;QD=14.63;ReadPosRankSum=0.625;SNPEFF_AMINO_ACID_CHANGE=K533R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60503248_60503481;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536643    GT:AD:DP:GQ:PL    0/1:51,55:106:99:1580,0,1440
20    60509209    rs3753045    C    T    290.09    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.065;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.43;MQ0=0;MQRankSum=0.161;QD=12.09;ReadPosRankSum=-0.097;SNPEFF_AMINO_ACID_CHANGE=G733;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60509114_60509278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536643    GT:AD:DP:GQ:PL    0/1:9,15:24:99:320,0,198
20    60509387    rs3827115    T    A    45.88    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=9.18;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    0/1:1,4:5:25.77:76,0,26
20    60509388    rs4925316    G    A    45.87    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=9.17;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    0/1:1,4:5:29.73:76,0,30
20    60511734    rs4925209    A    G    64.27    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=7.14;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    0/1:5,4:9:94.27:94,0,176
20    60511737    rs4925323    T    C    98.09    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.365;QD=8.92;ReadPosRankSum=0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360469    GT:AD:DP:GQ:PL    0/1:6,5:11:99:128,0,218
20    60572568    rs41284980    G    A    713.09    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.474;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4875;MQ=60.0;MQ0=0;MQRankSum=0.57;QD=15.17;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488539    GT:AD:DP:GQ:PL    0/1:20,27:47:99:743,0,598
20    60572663    rs2296081    C    A    2164.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=A1011;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60572606_60572725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252996    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2197,163,0
20    60573983    rs2296082    A    G    2589.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479744    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2622,223,0
20    60574216    rs2296083    C    T    4426.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7753;MQ=59.54;MQ0=0;QD=33.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479744    GT:AD:DP:GQ:PL    1/1:0,131:131:99:4426,334,0
20    60582401    rs2281734    C    A    47.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486599    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
20    60582540    rs2281735    T    A    2621.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486599    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2655,199,0
20    60584328    rs2296087    T    A    299.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252996    GT:AD:DP:GQ:PL    1/1:0,10:10:27.04:332,27,0
20    60699938    rs66738971    C    CT    293.89    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.556;DB;DP=22;FS=0.0;HRun=13;HaplotypeScore=118.1964;IndelType=I;MQ=58.38;MQ0=0;MQRankSum=1.508;QD=13.36;ReadPosRankSum=0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:8,13:22:6.81:334,7,0
20    60700021    rs1810697    T    C    126.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:159,15,0
20    60702503    rs6089656    G    T    538.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:572,45,0
20    60704117    rs4925345    A    G    399.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370915    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:432,33,0
20    60704185    rs4925346    T    C    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370915    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
20    60708216    rs6089657    G    A    244.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279069    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
20    60709088    rs6061438    T    C    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279069    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
20    60712174    rs3078903    CAGCAGT    C    1068.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=156.2188;IndelType=D;MQ=44.01;MQ0=0;QD=50.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:1111,63,0
20    60712284    rs2057169    G    A    1228.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1261,99,0
20    60712347    rs2057168    G    A    3720.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=59.58;MQ0=0;QD=33.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,109:110:99:3721,289,0
20    60712511    rs2281740    A    G    4513.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4514,331,0
20    60713038    rs2281739    T    C    132.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
20    60713311    rs7076    G    A    1389.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=R169;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60713227_60713346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370873    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1423,111,0
20    60713332    rs1135961    A    G    1487.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.05;MQ0=0;MQRankSum=1.069;QD=30.35;ReadPosRankSum=0.479;SNPEFF_AMINO_ACID_CHANGE=G162;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60713227_60713346;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMA7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370873    GT:AD:DP:GQ:PL    1/1:1,48:49:99:1520,111,0
20    60713571    rs6062077    G    A    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=11.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,2:4:6.02:78,6,0
20    60713906    rs3827118    G    A    256.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:289,21,0
20    60714525    rs6089664    G    A    176.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LSM14B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253001    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:210,15,0
20    60768573    rs41284984    C    T    653.43    PASS    AB=0.378;AC=1;AF=0.50;AN=2;BaseQRankSum=1.613;DB;DP=37;Dels=0.0;FS=3.354;HRun=0;HaplotypeScore=0.8667;MQ=59.38;MQ0=0;MQRankSum=0.204;QD=17.66;ReadPosRankSum=-0.893;SNPEFF_AMINO_ACID_CHANGE=R33W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60768472_60768680;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370823    GT:AD:DP:GQ:PL    0/1:14,23:37:99:683,0,379
20    60773041    rs6062140    G    C    626.74    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.617;DB;DP=50;Dels=0.0;FS=4.796;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=2.121;QD=12.53;ReadPosRankSum=-1.459;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466933    GT:AD:DP:GQ:PL    0/1:23,27:50:99:657,0,718
20    60773684    rs4925355    C    T    112.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466933    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
20    60774035    rs6142990    A    G    57.23    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=14.31;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461411    GT:AD:DP:GQ:PL    0/1:1,3:4:30.21:87,0,30
20    60776275    rs2184161    A    G    39.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448254    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
20    60791404    rs3787429    C    T    275.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.59;SNPEFF_AMINO_ACID_CHANGE=S302;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60791062_60791610;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRH3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370797    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:309,24,0
20    60792029    rs1739583    G    A    215.58    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=12;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=1.5317;MQ=58.05;MQ0=0;MQRankSum=1.109;QD=17.97;ReadPosRankSum=-0.185;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HRH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317393    GT:AD:DP:GQ:PL    0/1:3,9:12:58.33:246,0,58
20    60831300    rs6089706    G    A    996.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253000    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1029,78,0
20    60848248    rs6061476    G    T    346.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253000    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:380,27,0
20    60848348    rs2236526    C    T    1767.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253000    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1800,141,0
20    60854054    rs6062188    A    G    118.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253000    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:151,12,0
20    60857034    rs2274938    G    A    129.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253000    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
20    60858831    rs6061479    C    G    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253000    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
20    60859381    rs4925225    A    G    92.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253000    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
20    60864390    rs3746657    C    T    282.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313733    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:316,24,0
20    60881330    rs2427273    G    A    892.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_AMINO_ACID_CHANGE=A136;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60881253_60881376;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253003    GT:AD:DP:GQ:PL    1/1:1,25:26:72.22:925,72,0
20    60881643    rs2427274    T    C    77.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491935    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
20    60881680    .    C    T    40.43    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=5.78;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491935    GT:AD:DP:GQ:PL    0/1:4,3:7:66.40:70,0,66
20    60881780    rs2427275    T    C    169.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.2;SNPEFF_AMINO_ACID_CHANGE=L177;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60881704_60881790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000253003    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:202,15,0
20    60882277    rs2427277    C    T    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462554    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
20    60882888    rs2427278    A    G    476.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462554    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:509,39,0
20    60883919    rs2427279    T    C    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253003    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
20    60884852    rs140197067    G    A    276.68    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=25;Dels=0.0;FS=1.507;HRun=0;HaplotypeScore=0.9894;MQ=59.07;MQ0=0;MQRankSum=-0.029;QD=11.07;ReadPosRankSum=0.144;SNPEFF_AMINO_ACID_CHANGE=A3623V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60884772_60884891;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    0/1:12,13:25:99:307,0,374
20    60885448    rs944897    A    G    670.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=35.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253003    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:704,54,0
20    60886153    rs73144977    G    A    175.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.191;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=2.047;QD=13.49;ReadPosRankSum=-0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253003    GT:AD:DP:GQ:PL    0/1:7,6:13:99:205,0,210
20    60886611    rs2297590    C    T    198.87    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.181;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.978;QD=9.47;ReadPosRankSum=1.123;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADRM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253003    GT:AD:DP:GQ:PL    0/1:13,8:21:99:229,0,365
20    60887581    rs944895    G    A    292.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_AMINO_ACID_CHANGE=R3079W;SNPEFF_CODON_CHANGE=Cgg/Tgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60887456_60887588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:326,24,0
20    60890375    rs6062210    C    T    84.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481120    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
20    60892116    rs2236521    G    A    281.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481120    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:314,24,0
20    60892526    rs2427281    A    G    524.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.83;SNPEFF_AMINO_ACID_CHANGE=D2462;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60892401_60892555;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:557,42,0
20    60892692    rs6062216    C    T    153.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481120    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:186,15,0
20    60893387    rs183361685    A    G    114.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481120    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
20    60893639    rs6089732    G    C    864.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=28.8;SNPEFF_AMINO_ACID_CHANGE=T2370;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60893510_60893706;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,30:30:75.21:897,75,0
20    60895738    rs6089346    A    G    457.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=28.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464134    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:491,39,0
20    60897071    rs2274936    A    G    709.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=30.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464134    GT:AD:DP:GQ:PL    1/1:0,23:23:60.18:742,60,0
20    60899206    rs2427283    C    T    375.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=25.03;SNPEFF_AMINO_ACID_CHANGE=V1900M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60899136_60899260;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,14:15:30.10:408,30,0
20    60900481    rs2427284    A    G    440.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.8;MQ0=0;QD=25.93;SNPEFF_AMINO_ACID_CHANGE=F1807S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60900372_60900602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,17:17:36.12:474,36,0
20    60900579    rs2427285    C    A    544.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=55.52;MQ0=0;QD=34.05;SNPEFF_AMINO_ACID_CHANGE=T1774;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60900372_60900602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:578,45,0
20    60901669    rs45596640    T    C    75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.5;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    0/1:2,4:6:32.73:105,0,33
20    60902214    rs944894    G    A    149.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:182,15,0
20    60902490    rs944892    C    T    1010.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1044,78,0
20    60902544    rs944891    A    C    1555.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1588,120,0
20    60902883    rs4925375    C    T    1102.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=36.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,30:30:84.27:1136,84,0
20    60902965    rs74781811    G    A    534.74    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.141;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6385;MQ=59.2;MQ0=0;MQRankSum=-1.082;QD=18.44;ReadPosRankSum=0.376;SNPEFF_AMINO_ACID_CHANGE=A1585V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60902922_60903066;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    0/1:12,17:29:99:565,0,252
20    60904421    rs3065756    GCAGCC    G    222.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=71.0574;IndelType=D;MQ=61.5;MQ0=0;QD=22.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474128    GT:AD:DP:GQ:PL    1/1:4,6:10:15.05:264,15,0
20    60904853    rs2427286    T    C    360.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=K1367E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60904833_60904972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:394,30,0
20    60906055    rs73613564    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474128    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:82,6,0
20    60907446    rs2151513    T    C    1185.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.21;SNPEFF_AMINO_ACID_CHANGE=E1178;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60907428_60907536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,38:38:93.27:1219,93,0
20    60907675    rs6142734    G    A    184.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=30.76;SNPEFF_AMINO_ACID_CHANGE=A1127;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60907613_60907773;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:217,18,0
20    60908964    rs13044266    G    A    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.2;MQ0=0;QD=26.12;SNPEFF_AMINO_ACID_CHANGE=C957;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60908957_60909095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
20    60908969    rs13042941    T    C    173.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=28.96;SNPEFF_AMINO_ACID_CHANGE=T956A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60908957_60909095;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
20    60909060    rs13038331    A    G    313.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;QD=26.1;SNPEFF_AMINO_ACID_CHANGE=P925;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60908957_60909095;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,12:12:30.07:346,30,0
20    60909466    rs2379127    G    A    124.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
20    60909974    rs12625368    T    C    119.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:152,12,0
20    60911958    rs2890083    G    A    37.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=18.72;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000474128    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
20    60912683    rs2427289    T    C    402.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=26.81;SNPEFF_AMINO_ACID_CHANGE=T709;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60912646_60912783;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,15:15:33.09:435,33,0
20    60913495    rs2151512    T    C    251.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370692    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
20    60920887    rs11204472    G    A    55.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.37;SNPEFF_AMINO_ACID_CHANGE=A488;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60920874_60920933;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:86,6,0
20    60921044    rs4925386    T    C    452.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497053    GT:AD:DP:GQ:PL    1/1:0,14:14:36.12:486,36,0
20    60921643    rs4925229    T    C    478.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_AMINO_ACID_CHANGE=T401A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60921562_60921652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:512,39,0
20    60921701    rs4925387    A    G    533.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=25.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,21:21:48.13:567,48,0
20    60921896    rs4925388    A    G    802.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,26:26:72.16:835,72,0
20    60927349    rs483876    C    T    906.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_AMINO_ACID_CHANGE=A212;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60927298_60927416;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:940,69,0
20    60927412    rs624313    G    A    695.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_AMINO_ACID_CHANGE=S191;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60927298_60927416;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:729,54,0
20    60927482    rs482220    G    A    210.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
20    60927500    rs7354304    G    C    113.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
20    60927538    rs623834    C    T    94.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:127,9,0
20    60927551    rs482010    A    G    95.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:128,9,0
20    60937597    rs477859    A    G    317.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.76;SNPEFF_AMINO_ACID_CHANGE=C103;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60937456_60937608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LAMA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252999    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:351,30,0
20    60963494    rs6089356    C    T    258.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.193;DB;DP=25;Dels=0.0;FS=1.81;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.137;QD=10.35;ReadPosRankSum=-0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABLES2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279101    GT:AD:DP:GQ:PL    0/1:15,10:25:99:289,0,472
20    60966318    rs6089219    G    T    1320.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=35.68;SNPEFF_AMINO_ACID_CHANGE=T216K;SNPEFF_CODON_CHANGE=aCg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_60966305_60966509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABLES2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370560    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1353,99,0
20    60988010    rs17824418    C    T    400.94    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.201;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.89;QD=22.27;ReadPosRankSum=-2.201;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252998    GT:AD:DP:GQ:PL    0/1:6,12:18:99:431,0,150
20    60990606    rs3810554    A    C    416.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=30;Dels=0.0;FS=1.882;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.069;QD=13.89;ReadPosRankSum=0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252998    GT:AD:DP:GQ:PL    0/1:15,15:30:99:447,0,444
20    60992402    rs6061521    G    A    37.98    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.6;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf151;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252998    GT:AD:DP:GQ:PL    0/1:2,3:5:67.97:68,0,69
20    61039958    rs6061550    T    C    432.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=30.88;SNPEFF_AMINO_ACID_CHANGE=P376;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61038553_61040047;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252997    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:465,36,0
20    61040453    rs6061243    C    G    128.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.22;SNPEFF_AMINO_ACID_CHANGE=S327;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61040396_61040520;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252997    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
20    61040951    rs6587239    C    T    121.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.38;SNPEFF_AMINO_ACID_CHANGE=K284;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61040890_61040977;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252997    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
20    61048549    rs41305803    G    A    68.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=7.068;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=6.82;ReadPosRankSum=0.729;SNPEFF_AMINO_ACID_CHANGE=D203;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61048459_61048634;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252997    GT:AD:DP:GQ:PL    0/1:6,4:10:98.24:98,0,160
20    61143364    rs12625668    T    C    174.28    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=15;Dels=0.0;FS=6.99;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=-1.096;QD=11.62;ReadPosRankSum=-0.872;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370524    GT:AD:DP:GQ:PL    0/1:7,8:15:99:204,0,244
20    61143487    rs3934574    T    C    286.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.359;DB;DP=32;Dels=0.0;FS=1.451;HRun=2;HaplotypeScore=1.5767;MQ=55.52;MQ0=0;MQRankSum=0.061;QD=8.96;ReadPosRankSum=1.034;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370524    GT:AD:DP:GQ:PL    0/1:20,12:32:99:317,0,495
20    61143945    rs3934573    T    G    96.21    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=0.421;QD=12.03;ReadPosRankSum=0.421;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370524    GT:AD:DP:GQ:PL    0/1:4,4:8:99:126,0,117
20    61150928    rs76213714    A    G    357.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.656;DB;DP=20;Dels=0.0;FS=2.702;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.656;QD=17.85;ReadPosRankSum=0.193;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    0/1:8,12:20:99:387,0,259
20    61162017    rs45547937    G    A    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    0/1:1,2:3:27.95:73,0,28
20    61162037    rs13040566    G    A    74.16    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.54;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    0/1:1,3:4:16.61:104,0,17
20    61162100    rs13040413    G    A    123.89    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=15.49;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    0/1:2,6:8:55.87:154,0,56
20    61162267    rs6062251    T    C    169.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.16;SNPEFF_AMINO_ACID_CHANGE=V27A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61162196_61162307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370527    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:202,18,0
20    61167632    rs11483745    G    GT    356.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=11;HaplotypeScore=121.0057;IndelType=I;MQ=55.57;MQ0=0;QD=18.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    1/1:4,7:19:52.75:399,53,0
20    61167883    rs6143064    G    A    465.07    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.504;DB;DP=29;Dels=0.0;FS=3.558;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.776;QD=16.04;ReadPosRankSum=2.258;SNPEFF_AMINO_ACID_CHANGE=*100;SNPEFF_CODON_CHANGE=tGa/tAa;SNPEFF_EFFECT=SYNONYMOUS_STOP;SNPEFF_EXON_ID=exon_20_61167651_61167971;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    0/1:13,16:29:99:495,0,369
20    61167934    rs6143063    T    C    305.83    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.857;QD=15.29;ReadPosRankSum=-1.021;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    0/1:9,11:20:99:336,0,310
20    61168070    rs6143062    C    T    32.99    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.0;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:63,0,30
20    61168076    rs6062289    A    G    42.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf166;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370523    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
20    61287727    rs6122080    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342674    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    61288038    rs1047099    G    A    186.17    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=16.92;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=V78I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61287711_61288602;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217159    GT:AD:DP:GQ:PL    0/1:4,6:10:64.57:216,0,65
20    61288355    rs3195701    G    T    316.52    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=16;Dels=0.0;FS=2.869;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.326;QD=19.78;ReadPosRankSum=-1.632;SNPEFF_AMINO_ACID_CHANGE=G183;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61287711_61288602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217159    GT:AD:DP:GQ:PL    0/1:4,12:16:91.58:347,0,92
20    61302910    rs3838054    CTT    C    154.68    PASS    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=45.5907;IndelType=D;MQ=58.66;MQ0=0;MQRankSum=-0.38;QD=11.05;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470412    GT:AD:DP:GQ:PL    0/1:9,5:14:99:194,0,343
20    61303004    rs3787538    T    C    733.83    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=36;Dels=0.0;FS=8.352;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.258;QD=20.38;ReadPosRankSum=-0.319;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470412    GT:AD:DP:GQ:PL    0/1:12,24:36:99:764,0,364
20    61303579    rs4809464    T    C    68.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLCO4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342674    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:100,9,0
20    61326636    rs13036933    G    A    34.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.38;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435412    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:64,0,34
20    61389450    rs2427438    T    C    133.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370501    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
20    61389566    rs2427439    C    T    194.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NTSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370501    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:227,18,0
20    61428414    rs62198430    T    G    117.32    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.204;DB;DP=14;Dels=0.0;FS=3.358;HRun=0;HaplotypeScore=0.9665;MQ=54.85;MQ0=0;MQRankSum=0.663;QD=8.38;ReadPosRankSum=-0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370487    GT:AD:DP:GQ:PL    0/1:7,7:14:99:147,0,245
20    61428423    rs11696245    A    C    583.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.4637;MQ=56.45;MQ0=0;QD=29.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370487    GT:AD:DP:GQ:PL    1/1:0,20:20:48.15:616,48,0
20    61439696    rs41282978    C    G    362.84    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=0.175;DB;DP=34;Dels=0.0;FS=5.673;HRun=0;HaplotypeScore=0.9989;MQ=59.45;MQ0=0;MQRankSum=-1.109;QD=10.67;ReadPosRankSum=-0.915;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290291    GT:AD:DP:GQ:PL    0/1:21,13:34:99:393,0,579
20    61439708    rs760276    G    A    218.61    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.236;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=-0.031;QD=9.5;ReadPosRankSum=-1.669;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290291    GT:AD:DP:GQ:PL    0/1:14,9:23:99:249,0,497
20    61441035    rs2277772    G    A    1688.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290291    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1722,135,0
20    61441061    rs45585738    G    A    525.93    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.616;DB;DP=40;Dels=0.0;FS=4.664;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.239;QD=13.15;ReadPosRankSum=-0.464;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290291    GT:AD:DP:GQ:PL    0/1:19,21:40:99:556,0,608
20    61441797    rs2277771    A    G    642.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290291    GT:AD:DP:GQ:PL    1/1:0,22:22:57.14:675,57,0
20    61444665    rs6122314    G    A    37.93    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.53;MQ0=4;QD=3.79;SNPEFF_AMINO_ACID_CHANGE=P401;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61444619_61445001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370469    GT:AD:DP:GQ:PL    1/1:3,7:10:6.02:69,6,0
20    61444697    rs6122315    G    C    101.01    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=36.51;MQ0=3;MQRankSum=-0.572;QD=9.18;ReadPosRankSum=1.067;SNPEFF_AMINO_ACID_CHANGE=S412T;SNPEFF_CODON_CHANGE=aGc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61444619_61445001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370469    GT:AD:DP:GQ:PL    0/1:4,7:11:58.93:131,0,59
20    61444785    rs28368556    G    A    141.35    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.49;MQ0=1;MQRankSum=0.474;QD=10.87;ReadPosRankSum=-0.474;SNPEFF_AMINO_ACID_CHANGE=P441;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61444619_61445001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370469    GT:AD:DP:GQ:PL    1/1:1,12:13:15.03:174,15,0
20    61444939    rs11543349    G    C    107.34    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.237;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.18;MQ0=0;MQRankSum=0.334;QD=3.83;ReadPosRankSum=0.18;SNPEFF_AMINO_ACID_CHANGE=G493R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61444619_61445001;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OGFR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370469    GT:AD:DP:GQ:PL    0/1:19,9:28:99:137,0,632
20    61452837    rs117347229    G    A    323.92    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=21;Dels=0.0;FS=3.916;HRun=1;HaplotypeScore=0.9998;MQ=57.99;MQ0=0;MQRankSum=0.76;QD=15.42;ReadPosRankSum=-1.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343916    GT:AD:DP:GQ:PL    0/1:10,11:21:99:354,0,282
20    61453549    rs2294988    G    A    324.37    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.517;DB;DP=25;Dels=0.0;FS=4.084;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.626;QD=12.97;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343916    GT:AD:DP:GQ:PL    0/1:13,12:25:99:354,0,366
20    61453755    rs2294989    G    A    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343916    GT:AD:DP:GQ:PL    0/1:1,2:3:29.55:72,0,30
20    61455965    rs2734514    G    C    37.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343916    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
20    61456061    rs2746259    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343916    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    61458547    rs2249766    A    T    192.13    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.231;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.849;QD=14.78;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452372    GT:AD:DP:GQ:PL    0/1:4,9:13:94.68:222,0,95
20    61459366    rs34492576    C    T    274.32    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=1.501;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.45;MQ0=0;MQRankSum=0.326;QD=18.29;ReadPosRankSum=0.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452372    GT:AD:DP:GQ:PL    0/1:4,11:15:98.25:304,0,98
20    61460053    rs2249897    A    G    71.96    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.0;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452372    GT:AD:DP:GQ:PL    0/1:2,6:8:62.44:102,0,62
20    61463501    rs741758    T    C    399.54    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=29;Dels=0.0;FS=1.455;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.546;QD=13.78;ReadPosRankSum=1.942;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463487    GT:AD:DP:GQ:PL    0/1:14,15:29:99:430,0,359
20    61467328    .    G    A    175.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.083;DP=25;Dels=0.0;FS=7.402;HRun=1;HaplotypeScore=3.7652;MQ=58.31;MQ0=0;MQRankSum=0.527;QD=7.02;ReadPosRankSum=-1.969;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343916    GT:AD:DP:GQ:PL    0/1:15,10:25:99:206,0,499
20    61467898    rs910152    G    C    168.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469852    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:201,15,0
20    61468571    rs2294995    T    C    753.52    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.346;DB;DP=73;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=2.7044;MQ=59.43;MQ0=0;MQRankSum=-0.353;QD=10.32;ReadPosRankSum=0.512;SNPEFF_AMINO_ACID_CHANGE=P580;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61468435_61468617;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343916    GT:AD:DP:GQ:PL    0/1:42,31:73:99:784,0,1433
20    61471746    rs3835242    C    CCT    219.86    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=37.0462;IndelType=I;MQ=61.53;MQ0=0;MQRankSum=0.198;QD=31.41;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469802    GT:AD:DP:GQ:PL    0/1:2,4:7:76.87:259,0,77
20    61471768    rs28578314    G    C    174.40    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=61.19;MQ0=0;MQRankSum=-0.573;QD=19.38;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469802    GT:AD:DP:GQ:PL    0/1:3,6:9:70.67:204,0,71
20    61471799    rs6090136    A    T    198.77    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.58;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.07;MQ0=0;MQRankSum=-0.296;QD=19.88;ReadPosRankSum=0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=COL9A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469802    GT:AD:DP:GQ:PL    0/1:3,7:10:97.08:229,0,97
20    61485211    rs3765463    A    G    113.37    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.2;ReadPosRankSum=1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCFL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217162    GT:AD:DP:GQ:PL    0/1:3,4:7:95.95:143,0,96
20    61485649    rs3765465    C    T    37.65    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.0;QD=5.38;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCFL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217162    GT:AD:DP:GQ:PL    0/1:4,3:7:67.64:68,0,121
20    61488785    rs2294996    T    C    1207.89    PASS    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=80;Dels=0.0;FS=3.03;HRun=0;HaplotypeScore=1.6281;MQ=59.71;MQ0=0;MQRankSum=1.241;QD=15.1;ReadPosRankSum=-1.153;SNPEFF_AMINO_ACID_CHANGE=Q352;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61488747_61488990;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCFL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217162    GT:AD:DP:GQ:PL    0/1:34,46:80:99:1238,0,1108
20    61489101    rs4809262    G    C    149.48    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4434;MQ=58.11;MQ0=0;MQRankSum=-0.729;QD=14.95;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCFL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217162    GT:AD:DP:GQ:PL    0/1:4,5:10:99:179,0,139
20    61512606    rs910148    T    C    641.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=56.92;MQ0=0;QD=27.87;SNPEFF_AMINO_ACID_CHANGE=T1568A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61509090_61513766;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIDO1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266070    GT:AD:DP:GQ:PL    1/1:0,23:23:54.14:674,54,0
20    61542073    rs75432726    G    T    965.97    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.427;DB;DP=76;Dels=0.0;FS=6.505;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.993;QD=12.71;ReadPosRankSum=-1.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIDO1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266070    GT:AD:DP:GQ:PL    0/1:36,40:76:99:996,0,1169
20    61574660    rs2254953    A    G    140.22    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.747;QD=17.53;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497101    GT:AD:DP:GQ:PL    0/1:1,7:8:21.26:170,0,21
20    61575956    rs2427451    A    G    110.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266069    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
20    61575990    rs41304830    G    A    34.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.74;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266069    GT:AD:DP:GQ:PL    0/1:4,2:6:64.41:64,0,129
20    61594493    rs3729555    G    A    30.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370349    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:62,6,0
20    61594679    rs2427463    A    G    729.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=N222S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61594625_61594721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370349    GT:AD:DP:GQ:PL    1/1:0,22:22:57.17:763,57,0
20    61595537    rs2427464    A    G    3451.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7262;MQ=59.76;MQ0=0;QD=35.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487303    GT:AD:DP:GQ:PL    1/1:0,97:97:99:3452,265,0
20    61595636    rs2248900    C    T    1633.95    PASS    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=3.92;DB;DP=185;Dels=0.0;FS=2.016;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;MQRankSum=-0.212;QD=8.83;ReadPosRankSum=0.311;SNPEFF_AMINO_ACID_CHANGE=S287;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61595580_61595667;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370349    GT:AD:DP:GQ:PL    0/1:122,62:185:99:1664,0,3349
20    61596316    rs2427465    C    A    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487303    GT:AD:DP:GQ:PL    1/1:1,4:5:12.04:161,12,0
20    61596881    .    G    A    463.39    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.075;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.41;MQ0=0;MQRankSum=-0.704;QD=10.53;ReadPosRankSum=-0.126;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487303    GT:AD:DP:GQ:PL    0/1:23,21:44:99:493,0,638
20    61597946    rs5842409    CT    C    3754.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;FS=0.0;HRun=2;HaplotypeScore=281.6745;IndelType=D;MQ=60.86;MQ0=0;QD=37.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC17A9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487303    GT:AD:DP:GQ:PL    1/1:1,99:100:99:3755,292,0
20    61665871    rs1060490    A    G    461.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,16:16:39.12:494,39,0
20    61665921    rs1060489    C    T    937.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:970,72,0
20    61665975    rs7273917    G    A    1177.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1210,111,0
20    61665979    rs7267951    A    G    1099.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1132,108,0
20    61666017    rs7273930    G    A    1639.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=32.15;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1673,123,0
20    61666063    rs6011548    C    T    1896.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.92;MQ0=0;QD=32.69;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00029;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000370341    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1929,141,0
20    61666132    rs9679865    C    G    1139.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.26;MQ0=0;QD=35.61;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1172,90,0
20    61666168    rs9680064    G    A    835.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:868,66,0
20    61666180    rs13041507    T    C    682.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;QD=31.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,22:22:63.14:716,63,0
20    61666280    rs7268149    A    G    93.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=31.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
20    61666805    rs2277769    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
20    61666823    rs2277768    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=23.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
20    61666937    rs2277767    G    A    558.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.35;MQ0=0;QD=32.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:591,45,0
20    61667128    rs6062781    G    A    368.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AL121673.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370344    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:402,30,0
20    61866903    rs3810465    G    A    206.07    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.353;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-2.031;QD=11.45;ReadPosRankSum=0.883;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217169    GT:AD:DP:GQ:PL    0/1:9,9:18:99:236,0,253
20    61869607    rs6010878    C    A    34.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=56.04;MQ0=0;MQRankSum=1.38;QD=5.74;ReadPosRankSum=-0.72;SNPEFF_AMINO_ACID_CHANGE=H16Q;SNPEFF_CODON_CHANGE=caC/caA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61869554_61869829;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395306    GT:AD:DP:GQ:PL    0/1:4,2:6:64.43:64,0,126
20    61870605    rs5842415    T    TG    597.35    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.18;DB;DP=30;FS=0.0;HRun=3;HaplotypeScore=83.1189;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=0.054;QD=19.91;ReadPosRankSum=-0.108;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370307    GT:AD:DP:GQ:PL    0/1:12,18:30:99:636,0,236
20    61870727    rs1077019    G    C    293.89    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.903;DB;DP=19;Dels=0.0;FS=2.062;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.342;QD=15.47;ReadPosRankSum=1.513;SNPEFF_AMINO_ACID_CHANGE=E223Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61870710_61870962;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217169    GT:AD:DP:GQ:PL    0/1:9,10:19:99:324,0,183
20    61875497    rs2236186    A    C    120.61    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=55.66;MQ0=0;MQRankSum=0.678;QD=10.96;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIRC7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217169    GT:AD:DP:GQ:PL    0/1:4,7:11:64.18:151,0,64
20    61880274    rs2273497    A    G    52.76    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.555;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.925;QD=4.06;ReadPosRankSum=-0.925;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370307    GT:AD:DP:GQ:PL    0/1:9,3:13:82.75:83,0,331
20    61881296    rs927081    A    G    119.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.224;DB;DP=16;Dels=0.0;FS=9.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=7.47;ReadPosRankSum=-1.139;SNPEFF_AMINO_ACID_CHANGE=Y61;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61881287_61881424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370316    GT:AD:DP:GQ:PL    0/1:10,6:16:99:149,0,299
20    61898628    rs6089871    A    C    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NKAIN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370307    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:67,0,27
20    61915375    rs11086161    G    T    297.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.164;QD=19.82;ReadPosRankSum=-0.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519531    GT:AD:DP:GQ:PL    0/1:5,10:15:99:327,0,161
20    61916379    rs13042357    C    T    277.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519531    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:310,24,0
20    61917241    rs6090342    A    G    895.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519531    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:928,69,0
20    61941747    rs4809287    A    G    348.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=21.79;SNPEFF_AMINO_ACID_CHANGE=G426;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61941733_61941862;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    1/1:0,16:16:30.09:382,30,0
20    61943916    rs3833299    GC    G    805.14    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=2.271;DB;DP=40;FS=0.0;HRun=1;HaplotypeScore=117.0488;IndelType=D;MQ=60.27;MQ0=0;MQRankSum=-1.669;QD=20.13;ReadPosRankSum=0.985;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    0/1:17,23:40:99:844,0,655
20    61946692    rs6090357    C    T    250.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=25.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:284,21,0
20    61951326    rs11478836    CT    C    153.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=12.2978;IndelType=D;MQ=60.0;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
20    61951489    rs6089881    G    C    304.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=30.43;SNPEFF_AMINO_ACID_CHANGE=A1005;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61951391_61951549;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:337,27,0
20    61951789    rs6062891    C    T    811.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:845,63,0
20    61952490    rs4809533    A    G    270.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:304,24,0
20    61953365    rs1884821    T    C    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
20    61956782    rs2314251    T    C    181.48    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=0.242;DB;DP=32;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.638;QD=5.67;ReadPosRankSum=-0.374;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326996    GT:AD:DP:GQ:PL    0/1:21,11:32:99:211,0,621
20    61959642    rs2273494    G    A    500.53    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=39;Dels=0.0;FS=4.657;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.803;QD=12.83;ReadPosRankSum=0.634;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL20A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472502    GT:AD:DP:GQ:PL    0/1:21,18:39:99:531,0,513
20    61980991    rs3827020    T    C    695.84    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=43;Dels=0.0;FS=7.272;HRun=0;HaplotypeScore=0.8321;MQ=59.57;MQ0=0;MQRankSum=-0.842;QD=16.18;ReadPosRankSum=0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    0/1:17,26:43:99:726,0,425
20    61981104    rs1044397    C    T    291.59    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.82;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.501;QD=11.22;ReadPosRankSum=0.553;SNPEFF_AMINO_ACID_CHANGE=A459;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61981005_61982379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    0/1:16,10:26:99:322,0,355
20    61981134    rs1044396    G    A    223.88    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.208;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.158;QD=13.17;ReadPosRankSum=-0.473;SNPEFF_AMINO_ACID_CHANGE=S449;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61981005_61982379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    0/1:8,9:17:99:254,0,275
20    61981536    rs2229960    A    G    142.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.45;SNPEFF_AMINO_ACID_CHANGE=C315;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61981005_61982379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
20    61981554    rs2229959    C    A    163.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=P309;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61981005_61982379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
20    61982085    rs1044394    A    G    917.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.788;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.263;QD=25.48;ReadPosRankSum=-1.523;SNPEFF_AMINO_ACID_CHANGE=C132;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61981005_61982379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    1/1:1,35:36:43.01:950,43,0
20    61982124    rs1044393    A    G    1159.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=28.98;SNPEFF_AMINO_ACID_CHANGE=D119;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_61981005_61982379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    1/1:0,40:40:96.27:1192,96,0
20    61990874    rs6090384    T    C    821.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:854,63,0
20    61991141    rs3818204    G    A    62.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.51;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    0/1:2,3:5:69.72:93,0,70
20    61991247    rs6011789    T    C    31.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=15.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370258    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:63,6,0
20    61999308    rs6089899    G    A    98.32    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=8.94;ReadPosRankSum=0.278;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475033    GT:AD:DP:GQ:PL    0/1:7,4:11:99:128,0,183
20    61999669    rs4809295    T    C    551.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=27.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHRNA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475033    GT:AD:DP:GQ:PL    1/1:0,20:20:48.14:584,48,0
20    62038277    rs1801475    T    G    122.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.35;SNPEFF_AMINO_ACID_CHANGE=N749T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62037542_62038728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000430658    GT:AD:DP:GQ:PL    1/1:0,6:6:15.03:155,15,0
20    62038810    rs3746363    G    C    260.84    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.899;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=18.63;ReadPosRankSum=-1.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344462    GT:AD:DP:GQ:PL    0/1:4,10:14:99:291,0,129
20    62038866    rs3746362    G    C    57.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344462    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:90,9,0
20    62040022    rs2236197    T    C    74.50    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.64;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370222    GT:AD:DP:GQ:PL    0/1:3,4:7:99:104,0,101
20    62055417    rs6089910    G    A    330.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344462    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:364,27,0
20    62059505    rs6062931    G    A    125.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344462    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
20    62065420    rs6011829    C    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344425    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
20    62074081    rs62208030    T    C    39.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=9.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344425    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:70,6,0
20    62074089    .    T    A    39.99    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=13.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344425    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
20    62076743    rs6062939    C    A    540.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNQ2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344425    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:574,45,0
20    62121702    rs310607    A    G    79.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217182    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
20    62121726    rs310608    T    C    119.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=19.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217182    GT:AD:DP:GQ:PL    1/1:0,5:6:12.04:152,12,0
20    62122230    rs310609    A    G    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217182    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
20    62126128    rs149125493    G    C    102.43    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.0;QD=11.38;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217182    GT:AD:DP:GQ:PL    0/1:4,5:9:87.14:132,0,87
20    62126185    rs310617    A    G    264.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=20.36;SNPEFF_AMINO_ACID_CHANGE=G198;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62126158_62126454;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217182    GT:AD:DP:GQ:PL    1/1:0,13:13:27.06:298,27,0
20    62127121    rs310618    T    C    126.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=14;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.968;QD=9.01;ReadPosRankSum=-0.839;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EEF1A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217182    GT:AD:DP:GQ:PL    0/1:8,6:14:99:156,0,292
20    62171984    rs149640359    G    A    64.36    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=9.19;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRMS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217188    GT:AD:DP:GQ:PL    0/1:4,3:7:94.35:94,0,126
20    62172219    rs6122130    G    A    521.19    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.993;DB;DP=36;Dels=0.0;FS=1.313;HRun=2;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.152;QD=14.48;ReadPosRankSum=-0.623;SNPEFF_AMINO_ACID_CHANGE=F473;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62172163_62172352;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRMS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217188    GT:AD:DP:GQ:PL    0/1:15,21:36:99:551,0,398
20    62173562    rs56130722    G    T    317.95    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.935;QD=14.45;ReadPosRankSum=0.401;SNPEFF_AMINO_ACID_CHANGE=I300;SNPEFF_CODON_CHANGE=atC/atA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62173516_62173674;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRMS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217188    GT:AD:DP:GQ:PL    0/1:9,13:22:99:348,0,252
20    62174724    rs4809309    G    A    220.70    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=2.46;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=59.17;MQ0=0;MQRankSum=-0.639;QD=7.88;ReadPosRankSum=0.984;SNPEFF_AMINO_ACID_CHANGE=Y196;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62174667_62174833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRMS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217188    GT:AD:DP:GQ:PL    0/1:19,9:28:99:251,0,627
20    62187187    rs3746348    T    C    518.54    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.822;DB;DP=19;Dels=0.0;FS=3.245;HRun=2;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=-0.091;QD=27.29;ReadPosRankSum=-0.822;SNPEFF_AMINO_ACID_CHANGE=S57;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62187007_62188061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf195;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370097    GT:AD:DP:GQ:PL    1/1:1,18:19:9.57:551,10,0
20    62187439    rs734750    T    C    610.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.15;MQ0=0;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=D141;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62187007_62188061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf195;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370097    GT:AD:DP:GQ:PL    1/1:0,19:19:54.14:644,54,0
20    62190804    .    G    A    48.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DP=8;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=0.0;MQ=49.89;MQ0=0;MQRankSum=-1.754;QD=6.11;ReadPosRankSum=-1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf195;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370097    GT:AD:DP:GQ:PL    0/1:4,4:8:78.89:79,0,130
20    62191321    rs3810477    A    G    629.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=28.62;SNPEFF_AMINO_ACID_CHANGE=N2026;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62191281_62191448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    1/1:0,22:22:51.13:663,51,0
20    62193019    rs11551684    C    T    378.36    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=2.993;DB;DP=44;Dels=0.0;FS=4.921;HRun=0;HaplotypeScore=1.4725;MQ=59.48;MQ0=0;MQRankSum=-0.087;QD=8.6;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=P1688;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62192954_62193098;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:26,18:44:99:408,0,741
20    62193414    rs310629    A    G    43.27    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.592;DB;DP=14;Dels=0.0;FS=3.736;HRun=0;HaplotypeScore=0.9967;MQ=55.2;MQ0=0;MQRankSum=-0.93;QD=3.09;ReadPosRankSum=0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:10,4:14:73.27:73,0,314
20    62193445    rs3810481    G    A    73.43    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.6;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8288;MQ=54.35;MQ0=0;MQRankSum=-0.289;QD=6.12;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=T1601M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193425_62193556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:8,4:12:99:103,0,278
20    62194030    rs3810483    G    C    137.85    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.67;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=10.6;ReadPosRankSum=0.696;SNPEFF_AMINO_ACID_CHANGE=Q1480E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:8,5:13:99:168,0,245
20    62194103    rs3810484    A    G    59.48    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.5;ReadPosRankSum=-0.55;SNPEFF_AMINO_ACID_CHANGE=P1455;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:4,3:7:89.48:89,0,137
20    62195087    rs310630    A    G    59.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=57.05;MQ0=0;MQRankSum=0.956;QD=7.44;ReadPosRankSum=-1.221;SNPEFF_AMINO_ACID_CHANGE=S1127;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:5,3:8:89.54:90,0,168
20    62195220    rs3827022    C    T    183.14    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=15.26;ReadPosRankSum=-0.896;SNPEFF_AMINO_ACID_CHANGE=R1083Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:5,7:12:99:213,0,115
20    62195726    rs45469491    G    A    51.74    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.0;QD=8.62;ReadPosRankSum=1.38;SNPEFF_AMINO_ACID_CHANGE=D1483;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    0/1:2,4:6:55.39:82,0,55
20    62196033    rs3810487    C    T    87.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_AMINO_ACID_CHANGE=R1381K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
20    62196182    rs3810488    G    C    340.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.823;DB;DP=21;Dels=0.0;FS=4.834;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.872;QD=16.24;ReadPosRankSum=-0.079;SNPEFF_AMINO_ACID_CHANGE=A1331;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    0/1:7,14:21:99:371,0,188
20    62196807    rs310632    T    C    640.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=H1123R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:674,51,0
20    62196884    rs310633    A    G    964.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=T1097;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62193873_62197584;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:997,81,0
20    62198348    rs438363    C    T    345.54    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.371;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.2;MQ0=0;MQRankSum=0.263;QD=8.86;ReadPosRankSum=0.296;SNPEFF_AMINO_ACID_CHANGE=S219N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62198197_62199427;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:24,15:39:99:376,0,643
20    62198662    rs367440    A    G    102.59    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=1.159;QD=11.4;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=Y114;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62198197_62199427;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427522    GT:AD:DP:GQ:PL    0/1:5,4:9:99:133,0,131
20    62200471    rs6089923    C    G    79.75    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.788;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=4.98;ReadPosRankSum=-1.273;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370082    GT:AD:DP:GQ:PL    0/1:12,4:16:99:110,0,452
20    62200575    rs1741594    T    C    86.58    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=0.044;DB;DP=19;Dels=0.0;FS=2.112;HRun=0;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=-0.219;QD=4.56;ReadPosRankSum=1.886;SNPEFF_AMINO_ACID_CHANGE=S338;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62200501_62201018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    0/1:13,6:19:99:117,0,442
20    62200576    rs6090457    G    A    95.03    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.307;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.01;MQ0=0;MQRankSum=0.57;QD=5.0;ReadPosRankSum=2.061;SNPEFF_AMINO_ACID_CHANGE=S338L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62200501_62201018;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    0/1:13,6:19:99:125,0,452
20    62200860    rs1757752    A    G    111.13    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=15.88;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=A243;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62200501_62201018;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    0/1:2,5:7:64.93:141,0,65
20    62202240    rs402211    A    G    212.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:245,18,0
20    62202301    rs3746346    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP4-697K14.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467148    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
20    62221610    rs311496    T    C    72.86    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.69;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9642;MQ=56.56;MQ0=0;MQRankSum=1.221;QD=4.05;ReadPosRankSum=0.796;SNPEFF_AMINO_ACID_CHANGE=L424;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62218955_62222082;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370069    GT:AD:DP:GQ:PL    0/1:14,4:18:99:103,0,407
20    62221766    rs2297428    C    T    109.87    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=18.31;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=P372;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62218955_62222082;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370069    GT:AD:DP:GQ:PL    0/1:1,5:6:22.75:140,0,23
20    62223371    rs311494    A    G    365.10    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.271;DB;DP=29;Dels=0.0;FS=1.882;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.691;QD=12.59;ReadPosRankSum=0.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266068    GT:AD:DP:GQ:PL    0/1:13,16:29:99:395,0,405
20    62227081    rs311489    A    G    380.36    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.264;DB;DP=29;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=57.73;MQ0=0;MQRankSum=-0.023;QD=13.12;ReadPosRankSum=-0.712;SNPEFF_AMINO_ACID_CHANGE=H116;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62226963_62227120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370069    GT:AD:DP:GQ:PL    0/1:14,15:29:99:410,0,373
20    62227180    rs2282157    C    G    266.15    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.849;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.466;QD=20.47;ReadPosRankSum=-0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266068    GT:AD:DP:GQ:PL    0/1:4,9:13:99:296,0,116
20    62229244    rs2297430    T    C    118.91    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.02;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.133;QD=7.43;ReadPosRankSum=1.246;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266068    GT:AD:DP:GQ:PL    0/1:11,5:16:99:149,0,392
20    62234240    rs4809312    C    T    734.88    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.084;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=17.5;ReadPosRankSum=1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266068    GT:AD:DP:GQ:PL    0/1:16,26:42:99:765,0,443
20    62234241    rs2145262    A    G    729.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.076;DB;DP=40;Dels=0.0;FS=2.66;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.136;QD=18.24;ReadPosRankSum=1.437;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266068    GT:AD:DP:GQ:PL    0/1:16,24:40:99:759,0,450
20    62234273    rs766915    A    G    1606.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266068    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1640,135,0
20    62236148    rs6090471    T    C    1008.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8318;MQ=60.0;MQ0=0;QD=29.66;SNPEFF_AMINO_ACID_CHANGE=A59;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62236096_62236193;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GMEB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266068    GT:AD:DP:GQ:PL    1/1:0,34:34:84.25:1041,84,0
20    62272658    rs2150910    T    C    38.18    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.1;MQ0=0;QD=12.73;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STMN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370053    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:69,6,0
20    62273435    rs186744824    G    A    329.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.15;MQ0=0;MQRankSum=1.393;QD=32.91;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STMN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370053    GT:AD:DP:GQ:PL    1/1:1,9:10:27.09:362,27,0
20    62290663    rs2297432    C    T    241.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.22;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469728    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
20    62291008    rs6089953    A    G    156.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:190,15,0
20    62293460    rs2297433    T    C    33.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469728    GT:AD:DP:GQ:PL    1/1:0,2:2:6:64,6,0
20    62294015    rs2297434    C    T    733.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469728    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:766,57,0
20    62294158    rs45523833    C    T    671.06    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.851;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.045;QD=15.98;ReadPosRankSum=-0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469728    GT:AD:DP:GQ:PL    0/1:20,22:42:99:701,0,661
20    62294402    rs6010998    A    T    88.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469728    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
20    62305099    rs76214594    A    G    528.19    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.196;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.31;MQ0=0;MQRankSum=-2.196;QD=19.56;ReadPosRankSum=0.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    0/1:11,16:27:99:558,0,368
20    62309554    rs41309367    C    T    630.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;QD=28.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356810    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:663,51,0
20    62309839    rs6010620    A    G    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356810    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
20    62311098    rs2297438    G    A    555.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:0,17:17:45.14:588,45,0
20    62319464    rs2738785    T    C    738.16    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9578;MQ=59.03;MQ0=0;MQRankSum=-0.226;QD=30.76;ReadPosRankSum=-1.583;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:1,22:24:57.19:771,57,0
20    62319561    rs2777940    C    G    450.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.627;QD=16.1;ReadPosRankSum=0.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    0/1:12,16:28:99:481,0,286
20    62319604    rs2777941    A    C    805.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.6;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.581;MQ=58.27;MQ0=0;MQRankSum=1.6;QD=29.84;ReadPosRankSum=0.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:1,25:27:66.21:839,66,0
20    62320968    rs6062302    T    C    634.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.22;SNPEFF_AMINO_ACID_CHANGE=D664;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62320855_62321001;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:667,51,0
20    62321655    rs2236506    G    A    918.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=A151;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62321647_62321794;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425905    GT:AD:DP:GQ:PL    1/1:0,28:28:78.19:951,78,0
20    62322288    rs3208007    T    C    118.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.6;SNPEFF_AMINO_ACID_CHANGE=P848;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62322158_62322300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
20    62323006    rs2236507    G    C    970.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425905    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:1003,75,0
20    62326110    rs3208008    A    C    513.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.04;SNPEFF_AMINO_ACID_CHANGE=Q1042H;SNPEFF_CODON_CHANGE=caA/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62326094_62326327;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:547,42,0
20    62328375    rs2738787    A    G    475.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.44;SNPEFF_AMINO_ACID_CHANGE=R1388G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62328113_62328416;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:0,18:18:39.11:509,39,0
20    62332436    rs2738788    A    G    86.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
20    62332638    rs11086122    A    AC    929.69    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DB;DP=25;FS=0.0;HRun=2;HaplotypeScore=53.3824;IndelType=I;MQ=61.29;MQ0=0;MQRankSum=-0.722;QD=37.19;ReadPosRankSum=1.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AL353715.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318100    GT:AD:DP:GQ:PL    1/1:2,23:25:62.82:972,63,0
20    62337406    rs6011040    A    G    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303260    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
20    62337622    rs1291211    A    G    856.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303260    GT:AD:DP:GQ:PL    1/1:0,24:24:69.21:890,69,0
20    62340115    rs1291212    C    G    796.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.63;SNPEFF_AMINO_ACID_CHANGE=S61R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62339905_62340516;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZGPAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328969    GT:AD:DP:GQ:PL    1/1:0,26:26:63.19:829,63,0
20    62364885    rs6011068    T    A    5781.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.17;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZGPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328969    GT:AD:DP:GQ:PL    1/1:0,173:173:99:5782,424,0
20    62367377    rs2427535    A    G    334.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=37.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZGPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468235    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
20    62369300    rs914559    C    G    115.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZGPAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328969    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:148,12,0
20    62369895    rs1151624    A    G    170.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444951    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:204,15,0
20    62370349    rs1056441    T    C    61.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444951    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:93,9,0
20    62372706    rs4809221    G    A    669.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309546    GT:AD:DP:GQ:PL    1/1:0,21:24:54.17:702,54,0
20    62372813    rs2427536    G    A    743.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=P124;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62372723_62372832;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A4RG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000266077    GT:AD:DP:GQ:PL    1/1:0,24:24:57.19:776,57,0
20    62373707    rs8957    G    T    198.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=E233D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62373689_62373968;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SLC2A4RG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266077    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
20    62374219    rs1151626    A    C    438.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LIME1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309546    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:471,36,0
20    62378364    rs12625387    C    T    142.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.709;QD=9.51;ReadPosRankSum=-0.53;SNPEFF_AMINO_ACID_CHANGE=A563;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62375019_62378654;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB46;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000245663    GT:AD:DP:GQ:PL    0/1:9,6:15:99:173,0,282
20    62406749    rs3810494    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245663    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
20    62406819    rs3810495    A    G    75.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245663    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
20    62406886    rs3810496    T    C    212.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBTB46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245663    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
20    62517549    rs4809241    A    G    210.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217121    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
20    62518689    rs3795155    C    G    74.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217121    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
20    62518729    rs3795156    A    G    159.06    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.48;QD=15.91;ReadPosRankSum=-0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217121    GT:AD:DP:GQ:PL    0/1:2,8:10:58.92:189,0,59
20    62518766    rs3795157    C    T    230.74    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.022;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4942;MQ=51.77;MQ0=0;MQRankSum=0.209;QD=15.38;ReadPosRankSum=0.872;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPD52L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217121    GT:AD:DP:GQ:PL    0/1:7,8:15:99:261,0,234
20    62562397    rs75028039    C    T    94.80    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.256;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.533;QD=6.77;ReadPosRankSum=-1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360864    GT:AD:DP:GQ:PL    0/1:9,5:14:99:125,0,258
20    62571417    rs71333727    A    AG    34.84    QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.113;DB;DP=26;FS=2.933;HRun=12;HaplotypeScore=225.7038;IndelType=I;MQ=52.39;MQ0=0;MQRankSum=-0.906;QD=1.34;ReadPosRankSum=-1.699;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAJC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360864    GT:AD:DP:GQ:PL    0/1:9,8:26:63.46:74,0,63
20    62578077    rs2427572    A    AT    186.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=18.5167;IndelType=I;MQ=63.51;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UCKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354216    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:228,15,0
20    62641834    rs2427589    T    C    91.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266079    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
20    62697751    rs4809251    T    C    915.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCEA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475792    GT:AD:DP:GQ:PL    1/1:0,30:30:72.23:948,72,0
20    62698188    rs34848242    G    A    106.48    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.394;DB;DP=18;Dels=0.0;FS=5.563;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.493;QD=5.92;ReadPosRankSum=-0.789;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TCEA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475792    GT:AD:DP:GQ:PL    0/1:13,5:18:99:136,0,396
20    62701092    rs4809393    A    C    593.35    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=2.909;DB;DP=54;Dels=0.0;FS=5.732;HRun=0;HaplotypeScore=1.81;MQ=59.22;MQ0=0;MQRankSum=-0.34;QD=10.99;ReadPosRankSum=-0.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332298    GT:AD:DP:GQ:PL    0/1:28,26:54:99:623,0,795
20    62703490    rs13039439    C    T    729.67    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.808;DB;DP=60;Dels=0.0;FS=2.272;HRun=0;HaplotypeScore=0.9998;MQ=59.38;MQ0=0;MQRankSum=-1.4;QD=12.16;ReadPosRankSum=1.089;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332298    GT:AD:DP:GQ:PL    0/1:32,28:60:99:760,0,953
20    62705140    rs6011280    A    C    101.08    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=14.44;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGS19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479996    GT:AD:DP:GQ:PL    0/1:3,4:7:68.47:131,0,68
20    62715089    rs4337532    G    A    34.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.47;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C20orf201;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302096    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:64,0,32
20    62729577    rs2295448    C    T    286.10    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.18;DB;DP=16;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.295;QD=17.88;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPRL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336866    GT:AD:DP:GQ:PL    0/1:7,9:16:99:316,0,179
20    62737164    rs35050335    G    A    53.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=-2.054;QD=5.91;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPBWR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369768    GT:AD:DP:GQ:PL    0/1:3,6:9:83.17:83,0,99
20    62737318    rs13036542    G    A    183.05    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.077;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=55.86;MQ0=0;MQRankSum=0.88;QD=7.96;ReadPosRankSum=-1.373;SNPEFF_AMINO_ACID_CHANGE=P289;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62737173_62738524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPBWR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369768    GT:AD:DP:GQ:PL    0/1:12,11:23:99:213,0,358
20    62737537    rs4809400    C    A    201.49    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.195;DB;DP=21;Dels=0.0;FS=12.42;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.471;QD=9.59;ReadPosRankSum=1.05;SNPEFF_AMINO_ACID_CHANGE=T216;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62737173_62738524;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPBWR2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369768    GT:AD:DP:GQ:PL    0/1:13,8:21:99:231,0,369
20    62737568    rs4809401    T    C    274.14    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.513;DB;DP=27;Dels=0.0;FS=1.545;HRun=2;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=0.805;QD=10.15;ReadPosRankSum=-0.415;SNPEFF_AMINO_ACID_CHANGE=Q206R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62737173_62738524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPBWR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369768    GT:AD:DP:GQ:PL    0/1:15,12:27:99:304,0,457
20    62738311    rs35368587    G    A    32.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=0.406;QD=5.48;ReadPosRankSum=-1.537;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_20_62737173_62738524;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPBWR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369768    GT:AD:DP:GQ:PL    0/1:3,3:6:62.84:63,0,101
20    62744682    rs75030380    G    A    66.60    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.33;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,3:8:96.59:97,0,182
20    62839710    rs61746505    G    C    414.55    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.145;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.74;MQ0=0;MQRankSum=-0.59;QD=11.2;ReadPosRankSum=1.214;SNPEFF_AMINO_ACID_CHANGE=L387;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62838947_62839840;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328439    GT:AD:DP:GQ:PL    0/1:22,15:37:99:445,0,564
20    62843541    rs67801082    T    TG    222.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=5;HaplotypeScore=44.0267;IndelType=I;MQ=59.87;MQ0=0;QD=22.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328439    GT:AD:DP:GQ:PL    1/1:3,7:10:21.07:264,21,0
20    62848132    rs77576819    C    T    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328439    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
20    62858844    rs41279350    A    G    88.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328439    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
20    62859179    rs6089798    A    G    623.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328439    GT:AD:DP:GQ:PL    1/1:0,18:18:51.16:657,51,0
20    62867735    .    G    T    47.34    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328439    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
20    62871408    rs6090082    C    T    262.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328439    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:295,24,0
20    62891803    rs6062681    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299468    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
20    62891820    rs6062682    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299468    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
20    62896665    rs17878941    G    A    788.23    PASS    AB=0.589;AC=1;AF=0.50;AN=2;BaseQRankSum=5.107;DB;DP=73;Dels=0.0;FS=1.01;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.465;QD=10.8;ReadPosRankSum=-0.353;SNPEFF_AMINO_ACID_CHANGE=P155;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_20_62896611_62896782;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000299468    GT:AD:DP:GQ:PL    0/1:43,30:73:99:818,0,1284
20    62903535    rs11906201    T    C    1303.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299468    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1336,102,0
20    62903550    rs11905831    A    G    1308.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_AMINO_ACID_CHANGE=M1V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_20_62903550_62903583;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000266078    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1341,99,0
20    62903729    rs11907696    C    T    129.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266078    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:162,12,0
20    62904542    rs6062361    A    G    873.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266078    GT:AD:DP:GQ:PL    1/1:0,28:28:75.21:907,75,0
20    62905090    .    T    TTTC    275.85    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=0;HaplotypeScore=26.9532;IndelType=I;MQ=55.43;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCMTD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299468    GT:AD:DP:GQ:PL    1/1:3,5:8:15.05:318,15,0
20    62934475    rs75879493    A    G    81.62    MQFilter40    AB=0.816;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.827;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.26;MQ0=10;MQRankSum=0.756;QD=2.15;ReadPosRankSum=-2.044;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NCRNA00266-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000279067    GT:AD:DP:GQ:PL    0/1:31,7:38:99:112,0,596
21    9590334    rs66854923    C    A    3639.03    PASS    AB=0.206;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.432;DB;DP=194;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7692;MQ=41.99;MQ0=17;MQRankSum=-5.823;QD=18.76;ReadPosRankSum=-1.262;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:40,154:194:99:3639,0,873
21    9590475    rs3876000    A    C    75.20    MQFilter40;QDFilter2    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.741;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=29.89;MQ0=7;MQRankSum=-1.9;QD=1.88;ReadPosRankSum=-1.038;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:28,12:40:99:105,0,609
21    9590546    .    A    T    78.25    MQFilter40    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.47;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9469;MQ=29.74;MQ0=2;MQRankSum=1.268;QD=6.52;ReadPosRankSum=2.45;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,5:12:73.40:108,0,73
21    9769203    .    G    A    51.87    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=11.07;MQ0=25;QD=1.48;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:25,10:35:9:84,9,0
21    9769206    .    C    T    51.87    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.54;MQ0=27;QD=1.44;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:27,9:36:9:84,9,0
21    9769245    .    A    T    31.82    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=7.2;MQ0=31;QD=0.88;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:29,7:36:6.01:63,6,0
21    9769259    .    A    G    31.82    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.08;MQ0=32;QD=0.88;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:31,5:36:6.01:63,6,0
21    9865796    rs76729261    A    C    180.07    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.589;DB;DP=29;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=14.79;MQ0=18;MQRankSum=1.296;QD=6.21;ReadPosRankSum=2.003;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:3,26:29:21.01:213,21,0
21    9865961    rs76486923    C    T    669.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=28.97;MQ0=18;QD=16.33;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:12,29:41:57.16:703,57,0
21    9866106    rs6824302    T    A    95.31    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.009;DB;DP=20;Dels=0.0;FS=4.931;HRun=0;HaplotypeScore=0.0;MQ=41.52;MQ0=1;MQRankSum=-0.482;QD=4.77;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,6:20:99:125,0,317
21    9907097    rs11497324    A    G    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8735;MQ=23.44;MQ0=1;QD=13.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:0,5:5:9.02:100,9,0
21    9907114    rs4023133    C    T    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.47;MQ0=5;QD=7.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:3,6:9:9.02:100,9,0
21    9907222    rs4023131    T    C    350.91    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.33;MQ0=50;MQRankSum=1.504;QD=5.4;ReadPosRankSum=0.81;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:39,26:65:12.42:383,12,0
21    9907271    rs707019    A    G    584.13    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.473;DB;DP=66;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=22.11;MQ0=44;MQRankSum=1.419;QD=8.85;ReadPosRankSum=-1.419;SNPEFF_AMINO_ACID_CHANGE=I117;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_9907190_9909277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:6,60:66:26.49:617,26,0
21    9907345    rs3694    C    T    1145.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.26;MQ0=20;QD=19.75;SNPEFF_AMINO_ACID_CHANGE=V93I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_9907190_9909277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:16,42:58:96.26:1179,96,0
21    9907375    rs711877    T    C    653.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.18;MQ0=26;QD=12.57;SNPEFF_AMINO_ACID_CHANGE=K83E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_9907190_9909277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:6,46:52:63.14:687,63,0
21    9907384    rs17173323    G    A    521.01    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.8;MQ0=26;QD=11.58;SNPEFF_AMINO_ACID_CHANGE=R80C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_9907190_9909277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:6,39:45:51.11:554,51,0
21    9907397    rs1052766    C    T    462.83    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=22.95;MQ0=25;QD=11.57;SNPEFF_AMINO_ACID_CHANGE=A75;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_9907190_9909277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:8,32:40:42.11:496,42,0
21    9907416    rs28409069    C    T    273.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.81;MQ0=28;QD=7.02;SNPEFF_AMINO_ACID_CHANGE=R69Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_9907190_9909277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CR392039.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400754    GT:AD:DP:GQ:PL    1/1:16,23:39:27.07:307,27,0
21    10215182    .    C    G    591.62    MQFilter40    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.183;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=14.92;MQ0=143;MQRankSum=0.061;QD=3.32;ReadPosRankSum=-0.183;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:125,51:178:99:622,0,200
21    10614720    rs149208774    T    C    356.19    MQFilter40    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.495;DB;DP=39;Dels=0.0;FS=7.726;HRun=0;HaplotypeScore=0.0;MQ=29.86;MQ0=5;MQRankSum=-2.277;QD=9.13;ReadPosRankSum=-0.82;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,24:39:99:386,0,330
21    10614856    .    G    C    202.40    PASS    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=1.893;DP=66;Dels=0.0;FS=2.995;HRun=1;HaplotypeScore=0.0;MQ=47.2;MQ0=1;MQRankSum=2.844;QD=3.07;ReadPosRankSum=0.119;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:53,13:66:99:232,0,1317
21    10862598    rs3916646    C    T    1112.34    PASS    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.995;DB;DP=217;Dels=0.0;FS=4.323;HRun=0;HaplotypeScore=4.5037;MQ=59.68;MQ0=0;MQRankSum=-0.022;QD=5.13;ReadPosRankSum=0.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:165,51:217:99:1142,0,5294
21    10862599    rs3883945    C    T    5008.93    PASS    AB=0.244;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.076;DB;DP=221;Dels=0.0;FS=1.4;HRun=0;HaplotypeScore=4.5037;MQ=59.69;MQ0=0;MQRankSum=-0.944;QD=22.66;ReadPosRankSum=-0.534;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:54,167:221:99:5009,0,1291
21    10862618    rs3916251    T    C    5690.29    PASS    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=239;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=59.71;MQ0=0;MQRankSum=1.449;QD=23.81;ReadPosRankSum=0.247;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:57,182:239:99:5690,0,1432
21    10862846    rs3916645    A    T    4615.66    PASS    AB=0.27;AC=1;AF=0.50;AN=2;BaseQRankSum=4.302;DB;DP=200;DS;Dels=0.0;FS=3.729;HRun=1;HaplotypeScore=2.5807;MQ=53.27;MQ0=0;MQRankSum=-5.274;QD=23.08;ReadPosRankSum=0.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:54,146:200:99:4616,0,1483
21    10862853    rs1961808    G    A    4424.08    PASS    AB=0.256;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.501;DB;DP=201;DS;Dels=0.0;FS=4.898;HRun=1;HaplotypeScore=2.8822;MQ=53.12;MQ0=1;MQRankSum=-2.265;QD=22.01;ReadPosRankSum=-0.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:51,148:201:99:4424,0,1409
21    10862874    rs1807747    A    G    4257.56    PASS    AB=0.277;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.31;DB;DP=213;Dels=0.0;FS=1.21;HRun=0;HaplotypeScore=2.564;MQ=54.04;MQ0=1;MQRankSum=-3.378;QD=19.99;ReadPosRankSum=2.385;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:59,154:213:99:4258,0,1576
21    10862947    rs3883944    G    A    5618.55    PASS    AB=0.274;AC=1;AF=0.50;AN=2;BaseQRankSum=1.018;DB;DP=248;DS;Dels=0.0;FS=1.159;HRun=2;HaplotypeScore=2.3097;MQ=58.08;MQ0=0;MQRankSum=-3.138;QD=22.56;ReadPosRankSum=0.627;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:68,180:248:99:5619,0,1916
21    10863087    rs28521368    T    G    4930.81    PASS    AB=0.248;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.483;DB;DP=218;DS;Dels=0.0;FS=0.702;HRun=0;HaplotypeScore=3.5108;MQ=55.8;MQ0=0;MQRankSum=-2.041;QD=22.62;ReadPosRankSum=0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:54,164:218:99:4931,0,1410
21    10863251    rs28505969    G    T    52.45    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.97;MQ0=0;MQRankSum=0.085;QD=4.03;ReadPosRankSum=-0.254;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGHV1OR21-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302092    GT:AD:DP:GQ:PL    0/1:10,3:13:82.45:82,0,363
21    10898196    rs59392824    C    T    173.30    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=3.424;HRun=4;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-1.408;QD=15.75;ReadPosRankSum=1.031;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SLC25A15P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456889    GT:AD:DP:GQ:PL    0/1:5,6:11:99:203,0,143
21    10898210    rs28621728    A    C    272.63    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=-0.348;QD=27.26;ReadPosRankSum=-1.741;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SLC25A15P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456889    GT:AD:DP:GQ:PL    0/1:1,9:10:12.55:303,0,13
21    10898469    rs146788590    G    T    43.75    MQFilter40;QDFilter2    AB=0.328;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.036;DB;DP=61;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=7.58;MQ0=51;MQRankSum=-0.365;QD=0.72;ReadPosRankSum=0.741;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SLC25A15P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456889    GT:AD:DP:GQ:PL    0/1:20,41:61:40.31:74,0,40
21    10907041    rs12627379    C    A    284.39    PASS    AB=0.797;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.669;DB;DP=64;Dels=0.0;FS=3.605;HRun=0;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.484;QD=4.44;ReadPosRankSum=-1.135;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:51,13:64:99:314,0,1775
21    10907449    rs11911572    G    A    58.21    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.106;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.58;MQ0=1;MQRankSum=1.377;QD=4.85;ReadPosRankSum=2.262;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:9,3:12:88.20:88,0,263
21    10909629    rs112393420    G    A    1165.25    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=3.602;DB;DP=177;Dels=0.0;FS=2.443;HRun=0;HaplotypeScore=3.3532;MQ=50.59;MQ0=6;MQRankSum=0.109;QD=6.58;ReadPosRankSum=1.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:129,48:177:99:1195,0,3179
21    10909787    rs113145541    A    C    416.28    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=1.984;DB;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=55.65;MQ0=1;MQRankSum=1.871;QD=5.48;ReadPosRankSum=0.132;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:58,18:76:99:446,0,1801
21    10909809    .    C    CTT    98.03    QDFilter2    AB=0.912;AC=1;AF=0.50;AN=2;BaseQRankSum=3.46;DP=52;FS=0.0;HRun=1;HaplotypeScore=254.5369;IndelType=I;MQ=56.14;MQ0=0;MQRankSum=-2.555;QD=1.89;ReadPosRankSum=2.102;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:47,5:52:99:137,0,1874
21    10909812    .    T    TA    51.04    QDFilter2    AB=0.907;AC=1;AF=0.50;AN=2;BaseQRankSum=3.452;DP=49;FS=0.0;HRun=0;HaplotypeScore=213.6793;IndelType=I;MQ=57.11;MQ0=0;MQRankSum=-2.593;QD=1.04;ReadPosRankSum=2.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:44,5:49:90.07:90,0,1678
21    10910253    rs1828001    G    T    562.27    PASS    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.06;DB;DP=69;Dels=0.0;FS=2.25;HRun=1;HaplotypeScore=0.8941;MQ=52.54;MQ0=0;MQRankSum=-2.704;QD=8.15;ReadPosRankSum=0.621;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:47,22:69:99:592,0,1530
21    10910291    rs150480    C    T    1449.39    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.388;DB;DP=111;Dels=0.0;FS=3.057;HRun=3;HaplotypeScore=3.7073;MQ=51.07;MQ0=1;MQRankSum=-5.45;QD=13.06;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:49,62:111:99:1479,0,1413
21    10910311    rs9996    T    G    1743.10    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=1.988;DB;DP=122;Dels=0.0;FS=3.53;HRun=0;HaplotypeScore=2.4521;MQ=51.3;MQ0=1;MQRankSum=-5.46;QD=14.17;ReadPosRankSum=0.12;SNPEFF_AMINO_ACID_CHANGE=Y444S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_10910307_10910399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342420    GT:AD:DP:GQ:PL    0/1:52,70:122:99:1773,0,1524
21    10910347    rs150482    A    G    3121.46    PASS    AB=0.188;AC=1;AF=0.50;AN=2;BaseQRankSum=0.108;DB;DP=134;Dels=0.0;FS=7.697;HRun=1;HaplotypeScore=2.5585;MQ=53.6;MQ0=1;MQRankSum=-0.12;QD=23.29;ReadPosRankSum=-0.688;SNPEFF_AMINO_ACID_CHANGE=L432P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_10910307_10910399;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342420    GT:AD:DP:GQ:PL    0/1:25,108:134:99:3151,0,484
21    10916290    rs61249862    T    C    67.74    QDFilter2    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=1.783;DB;DP=51;Dels=0.0;FS=4.969;HRun=0;HaplotypeScore=9.9945;MQ=50.4;MQ0=1;MQRankSum=-1.298;QD=1.33;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:41,10:51:97.74:98,0,1229
21    10916293    rs150483    A    G    441.37    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.742;DB;DP=54;Dels=0.0;FS=5.705;HRun=0;HaplotypeScore=9.9945;MQ=50.98;MQ0=1;MQRankSum=-3.799;QD=8.17;ReadPosRankSum=0.756;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:28,26:54:99:471,0,835
21    10916322    rs210506    G    A    326.80    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.384;DB;DP=81;Dels=0.0;FS=1.266;HRun=1;HaplotypeScore=1.9623;MQ=54.13;MQ0=1;MQRankSum=-1.685;QD=4.03;ReadPosRankSum=-0.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:62,19:81:99:357,0,1939
21    10916534    rs112489240    C    CTT    657.78    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=2.308;DB;DP=91;FS=1.696;HRun=13;HaplotypeScore=496.3529;IndelType=I;MQ=54.49;MQ0=1;MQRankSum=-0.432;QD=7.07;ReadPosRankSum=-1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:55,14:91:99:697,0,633
21    10920067    rs4913681    T    C    90.48    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=0.653;DB;DP=59;Dels=0.0;FS=7.512;HRun=0;HaplotypeScore=4.62;MQ=58.33;MQ0=0;MQRankSum=0.1;QD=1.53;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:51,8:59:99:120,0,1584
21    10920098    rs212146    T    C    2300.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.48;MQ0=0;QD=30.68;SNPEFF_AMINO_ACID_CHANGE=K348E;SNPEFF_CODON_CHANGE=Aaa/Gaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_10920084_10920164;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342420    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2334,178,0
21    10921766    rs61477706    A    C    187.90    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.43;MQ0=0;MQRankSum=0.317;QD=9.39;ReadPosRankSum=0.792;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:13,7:20:99:218,0,459
21    10921867    .    C    A    304.92    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.994;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6828;MQ=59.71;MQ0=0;MQRankSum=-1.632;QD=4.12;ReadPosRankSum=-1.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:57,17:74:99:335,0,1868
21    10922130    rs61109284    G    A    32.94    QDFilter2    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.063;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.27;MQ0=0;MQRankSum=0.315;QD=1.94;ReadPosRankSum=0.189;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:14,3:17:62.93:63,0,494
21    10933986    rs4913855    C    G    601.83    PASS    AB=0.794;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.028;DB;DP=190;Dels=0.0;FS=0.725;HRun=0;HaplotypeScore=0.0;MQ=46.33;MQ0=0;MQRankSum=0.386;QD=3.17;ReadPosRankSum=0.777;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:150,39:190:99:632,0,4727
21    10934922    .    G    A    358.63    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=0.772;DP=87;Dels=0.0;FS=1.105;HRun=1;HaplotypeScore=0.7887;MQ=58.22;MQ0=0;MQRankSum=-0.943;QD=4.12;ReadPosRankSum=-0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:67,20:87:99:389,0,2219
21    10942036    rs2019999    T    A    225.20    PASS    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.942;DB;DP=73;Dels=0.0;FS=2.977;HRun=7;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-1.864;QD=3.08;ReadPosRankSum=-0.512;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:58,15:73:99:255,0,2184
21    10942756    rs1810540    G    A    1548.55    PASS    AB=0.746;AC=1;AF=0.50;AN=2;BaseQRankSum=1.585;DB;DP=249;DS;Dels=0.0;FS=1.822;HRun=0;HaplotypeScore=4.5313;MQ=59.72;MQ0=0;MQRankSum=1.154;QD=6.22;ReadPosRankSum=1.01;SNPEFF_AMINO_ACID_CHANGE=R191*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_21_10942711_10942774;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000342420    GT:AD:DP:GQ:PL    0/1:185,63:249:99:1579,0,5202
21    10942842    rs62212562    G    C    748.98    PASS    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.314;DB;DP=117;DS;Dels=0.0;FS=3.685;HRun=0;HaplotypeScore=1.782;MQ=59.34;MQ0=0;MQRankSum=1.472;QD=6.4;ReadPosRankSum=-0.364;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:88,29:117:99:779,0,3170
21    10942911    .    G    A    420.49    PASS    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.518;DP=92;Dels=0.0;FS=0.971;HRun=0;HaplotypeScore=1.8273;MQ=58.34;MQ0=0;MQRankSum=-0.08;QD=4.57;ReadPosRankSum=-1.314;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:71,21:92:99:450,0,2407
21    10942924    rs113444703    CCTT    C    469.21    PASS    AB=0.837;AC=1;AF=0.50;AN=2;BaseQRankSum=5.966;DB;DP=85;FS=0.0;HRun=0;HaplotypeScore=436.7132;IndelType=D;MQ=58.04;MQ0=0;MQRankSum=0.185;QD=5.39;ReadPosRankSum=0.284;SNPEFF_AMINO_ACID_CHANGE=RR182R;SNPEFF_CODON_CHANGE=agaagg/agg;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_21_10942921_10943020;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342420    GT:AD:DP:GQ:PL    0/1:70,17:85:99:508,0,4145
21    10942981    rs78225807    C    A    298.08    PASS    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=1.606;DB;DP=78;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.27;MQ0=0;MQRankSum=2.177;QD=3.82;ReadPosRankSum=-0.92;SNPEFF_AMINO_ACID_CHANGE=L164;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_10942921_10943020;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342420    GT:AD:DP:GQ:PL    0/1:59,19:78:99:328,0,1945
21    10943003    rs1810856    C    T    277.59    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=3.49;DB;DP=72;Dels=0.0;FS=12.562;HRun=1;HaplotypeScore=0.9789;MQ=58.53;MQ0=0;MQRankSum=0.412;QD=3.86;ReadPosRankSum=-0.181;SNPEFF_AMINO_ACID_CHANGE=R157Q;SNPEFF_CODON_CHANGE=cGa/cAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_10942921_10943020;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342420    GT:AD:DP:GQ:PL    0/1:58,14:72:99:308,0,1592
21    10943038    rs2020014    C    A    209.89    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=4.711;DB;DP=47;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.42;QD=4.47;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:36,11:47:99:240,0,1037
21    10944519    .    G    A    132.16    PASS    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.297;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=49.01;MQ0=0;MQRankSum=1.233;QD=3.15;ReadPosRankSum=-1.618;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:34,8:42:99:162,0,1141
21    10944930    .    A    G    35.49    QDFilter2    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.885;QD=1.14;ReadPosRankSum=-1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:27,4:31:65.48:65,0,987
21    10945081    rs111454050    T    C    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
21    10951161    rs4528861    T    C    264.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.186;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=58.61;MQ0=0;MQRankSum=-0.643;QD=9.79;ReadPosRankSum=-0.746;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328758    GT:AD:DP:GQ:PL    0/1:18,9:27:99:294,0,601
21    10952798    rs212129    T    C    213.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.588;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.44;MQ0=1;MQRankSum=0.424;QD=10.15;ReadPosRankSum=1.196;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:12,9:21:99:243,0,405
21    10969266    rs464928    T    C    120.01    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.98;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7219;MQ=40.41;MQ0=0;MQRankSum=-2.84;QD=8.0;ReadPosRankSum=-0.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:7,8:15:99:150,0,227
21    10969894    rs72487636    A    AATGG    191.23    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.027;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=115.8348;IndelType=I;MQ=59.24;MQ0=0;MQRankSum=1.858;QD=7.97;ReadPosRankSum=0.265;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:19,5:24:99:230,0,571
21    10971453    rs1739180    T    C    72.54    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=6.04;ReadPosRankSum=1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:8,4:12:99:103,0,293
21    10973787    rs469953    T    A    260.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.195;DB;DP=28;Dels=0.0;FS=1.82;HRun=0;HaplotypeScore=0.5784;MQ=51.28;MQ0=0;MQRankSum=-3.44;QD=9.32;ReadPosRankSum=-1.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:16,12:28:99:291,0,495
21    10973798    rs469961    T    C    171.92    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.157;DB;DP=24;Dels=0.0;FS=5.643;HRun=0;HaplotypeScore=0.5784;MQ=50.95;MQ0=0;MQRankSum=-4.0;QD=7.16;ReadPosRankSum=-1.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298232    GT:AD:DP:GQ:PL    0/1:15,9:24:99:202,0,491
21    10995994    rs76206987    A    AG    560.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=93.4076;IndelType=I;MQ=60.7;MQ0=0;QD=35.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:603,48,0
21    10996025    rs469828    C    T    999.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=38.45;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    1/1:0,26:26:78.24:1033,78,0
21    10998086    rs461516    T    A    1004.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.59;MQ0=0;QD=32.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    1/1:0,31:31:90.21:1038,90,0
21    10998165    rs364232    C    A    1722.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.39;MQ0=9;QD=19.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    1/1:6,83:89:99:1755,159,0
21    11012916    rs4041777    C    A    62.58    MQFilter40;QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=0.336;DB;DP=104;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7336;MQ=25.81;MQ0=35;MQRankSum=-2.878;QD=0.6;ReadPosRankSum=-1.96;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:89,15:104:92.57:93,0,1444
21    11012923    .    T    C    143.37    MQFilter40;QDFilter2    AB=0.84;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.901;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7336;MQ=28.25;MQ0=32;MQRankSum=-2.459;QD=1.35;ReadPosRankSum=-1.652;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:89,17:106:99:173,0,1476
21    11013031    .    A    G    141.33    MQFilter40    AB=0.756;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DP=45;Dels=0.0;FS=4.388;HRun=0;HaplotypeScore=0.9332;MQ=36.83;MQ0=2;MQRankSum=-1.406;QD=3.14;ReadPosRankSum=-0.654;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:34,11:45:99:171,0,1111
21    11013050    rs3879308    T    C    106.10    MQFilter40    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=0.955;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.65;MQ0=2;MQRankSum=-0.053;QD=3.54;ReadPosRankSum=-1.963;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:23,7:30:99:136,0,683
21    11020706    rs56114196    C    T    388.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.66;MQ0=12;QD=9.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    1/1:0,39:39:45.04:422,45,0
21    11021095    rs56203804    T    C    734.03    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.028;DB;DP=143;Dels=0.0;FS=4.238;HRun=0;HaplotypeScore=9.524;MQ=43.82;MQ0=6;MQRankSum=1.364;QD=5.13;ReadPosRankSum=-1.123;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:109,34:143:99:764,0,2913
21    11021125    rs9712674    C    T    348.44    HaplotypeScoreFilter13    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=1.614;DB;DP=172;Dels=0.0;FS=0.859;HRun=2;HaplotypeScore=14.0811;MQ=45.36;MQ0=6;MQRankSum=-1.37;QD=2.03;ReadPosRankSum=-1.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:146,25:172:99:378,0,4067
21    11021134    rs9712730    G    A    108.18    QDFilter2    AB=0.91;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.154;DB;DP=177;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.7519;MQ=45.56;MQ0=6;MQRankSum=-2.501;QD=0.61;ReadPosRankSum=-1.493;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:161,16:177:99:138,0,4699
21    11021163    .    T    TA    1786.55    PASS    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.822;DP=183;FS=3.01;HRun=1;HaplotypeScore=669.035;IndelType=I;MQ=47.6;MQ0=1;MQRankSum=-0.528;QD=9.5;ReadPosRankSum=0.099;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:139,49:183:99:1826,0,4294
21    11021331    rs4309657    A    G    158.77    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.811;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.82;MQ0=1;MQRankSum=-2.203;QD=7.56;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:12,9:21:99:189,0,327
21    11026744    rs60452470    G    A    31.91    MQFilter40;QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=1.337;DB;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.6059;MQ=21.02;MQ0=39;MQRankSum=0.881;QD=0.32;ReadPosRankSum=-0.989;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:84,15:99:61.90:62,0,914
21    11027002    rs112338829    C    G    447.86    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.685;DB;DP=204;Dels=0.0;FS=5.785;HRun=0;HaplotypeScore=5.2882;MQ=45.33;MQ0=20;MQRankSum=-11.182;QD=2.2;ReadPosRankSum=-1.992;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:114,90:204:99:478,0,3913
21    11029501    rs7510034    G    A    93.46    MQFilter40    AB=0.824;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.61;MQ0=2;MQRankSum=1.376;QD=2.75;ReadPosRankSum=-0.748;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:28,6:34:99:123,0,522
21    11029565    rs7510046    G    A    415.88    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.014;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.9965;MQ=49.38;MQ0=1;MQRankSum=-3.085;QD=10.4;ReadPosRankSum=-1.366;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:18,22:40:99:446,0,578
21    11029616    rs7510058    G    T    617.63    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.382;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.9858;MQ=46.41;MQ0=3;MQRankSum=-1.367;QD=8.46;ReadPosRankSum=0.885;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:49,24:73:99:648,0,1093
21    11029624    rs7509672    C    T    140.02    HaplotypeScoreFilter13;QDFilter2    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=0.331;DB;DP=76;Dels=0.0;FS=11.549;HRun=0;HaplotypeScore=17.6777;MQ=45.93;MQ0=2;MQRankSum=0.843;QD=1.84;ReadPosRankSum=0.959;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:67,9:76:99:170,0,1664
21    11029630    rs143467745    GC    G    152.22    QDFilter2    AB=0.895;AC=1;AF=0.50;AN=2;BaseQRankSum=4.256;DB;DP=62;FS=8.838;HRun=1;HaplotypeScore=440.7575;IndelType=D;MQ=45.7;MQ0=2;MQRankSum=-0.46;QD=1.98;ReadPosRankSum=0.819;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:68,9:62:99:191,0,2343
21    11029653    rs61605695    C    T    296.71    PASS    AB=0.827;AC=1;AF=0.50;AN=2;BaseQRankSum=0.902;DB;DP=98;Dels=0.0;FS=16.242;HRun=0;HaplotypeScore=0.5784;MQ=45.43;MQ0=2;MQRankSum=-1.785;QD=3.03;ReadPosRankSum=0.528;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:81,17:98:99:327,0,1758
21    11029679    rs10446163    C    G    879.68    HaplotypeScoreFilter13    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.602;DB;DP=111;Dels=0.0;FS=4.517;HRun=1;HaplotypeScore=21.6253;MQ=46.84;MQ0=0;MQRankSum=-7.555;QD=7.93;ReadPosRankSum=0.086;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:54,57:111:99:910,0,1543
21    11029855    rs4514973    C    T    203.71    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.698;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=44.64;MQ0=1;MQRankSum=3.416;QD=5.66;ReadPosRankSum=0.245;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPTE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415664    GT:AD:DP:GQ:PL    0/1:27,9:36:99:234,0,662
21    11038487    rs581855    T    G    34.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;MQRankSum=0.0;QD=8.57;ReadPosRankSum=1.026;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:64,0,68
21    11038700    .    T    A    263.66    MQFilter40;QDFilter2    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.383;DP=135;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8837;MQ=28.02;MQ0=32;MQRankSum=1.286;QD=1.95;ReadPosRankSum=1.225;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:112,23:135:99:294,0,2189
21    11038722    rs62209718    C    A    3122.99    MQFilter40    AB=0.358;AC=1;AF=0.50;AN=2;BaseQRankSum=3.077;DB;DP=201;Dels=0.0;FS=0.833;HRun=1;HaplotypeScore=3.4019;MQ=38.79;MQ0=26;MQRankSum=0.079;QD=15.54;ReadPosRankSum=0.316;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:72,129:201:99:3153,0,1337
21    11038802    rs56253511    G    A    2298.30    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=4.738;DB;DP=245;DS;Dels=0.0;FS=6.028;HRun=1;HaplotypeScore=2.7258;MQ=50.2;MQ0=6;MQRankSum=-4.571;QD=9.38;ReadPosRankSum=1.166;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:160,85:245:99:2328,0,4797
21    11038843    rs10433076    G    C    3769.41    PASS    AB=0.369;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.23;DB;DP=244;DS;Dels=0.0;FS=3.276;HRun=0;HaplotypeScore=1.849;MQ=44.25;MQ0=31;MQRankSum=-2.938;QD=15.45;ReadPosRankSum=1.601;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:90,154:244:99:3769,0,2250
21    11038868    rs67736403    C    T    2273.95    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=5.407;DB;DP=250;DS;Dels=0.0;FS=20.116;HRun=0;HaplotypeScore=3.4966;MQ=42.76;MQ0=29;MQRankSum=-7.315;QD=9.1;ReadPosRankSum=-3.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:124,126:250:99:2304,0,3616
21    11039079    rs3888469    C    A    1092.13    HaplotypeScoreFilter13    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.677;DB;DP=243;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=37.3531;MQ=51.34;MQ0=0;MQRankSum=1.029;QD=4.49;ReadPosRankSum=-0.291;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:176,49:243:99:1122,0,5772
21    11039142    rs2537265    T    A    66.20    QDFilter2    AB=0.903;AC=1;AF=0.50;AN=2;BaseQRankSum=0.226;DB;DP=206;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.12;MQ0=1;MQRankSum=0.541;QD=0.32;ReadPosRankSum=-2.257;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:186,20:206:96.20:96,0,6186
21    11039188    .    A    G    436.29    QDFilter2    AB=0.855;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.478;DP=228;Dels=0.0;FS=16.821;HRun=1;HaplotypeScore=5.9935;MQ=57.29;MQ0=0;MQRankSum=2.06;QD=1.91;ReadPosRankSum=2.391;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:194,33:228:99:466,0,6884
21    11039344    rs3915340    G    A    4263.91    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=0.664;DB;DP=235;DS;Dels=0.0;FS=11.158;HRun=0;HaplotypeScore=0.9993;MQ=55.73;MQ0=0;MQRankSum=1.789;QD=18.14;ReadPosRankSum=1.351;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:91,144:235:99:4264,0,2465
21    11039394    rs2698623    C    T    224.15    QDFilter2    AB=0.881;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.275;DB;DP=185;DS;Dels=0.0;FS=2.667;HRun=0;HaplotypeScore=5.2465;MQ=57.69;MQ0=0;MQRankSum=0.431;QD=1.21;ReadPosRankSum=0.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:163,22:185:99:254,0,5713
21    11039450    rs3915344    A    G    2142.29    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=5.133;DB;DP=111;Dels=0.0;FS=8.252;HRun=0;HaplotypeScore=0.7887;MQ=56.24;MQ0=0;MQRankSum=0.195;QD=19.3;ReadPosRankSum=1.266;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:46,65:111:99:2172,0,1399
21    11039487    rs596858    A    C    104.88    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=72;Dels=0.0;FS=2.335;HRun=1;HaplotypeScore=2.8735;MQ=55.22;MQ0=0;MQRankSum=0.372;QD=1.46;ReadPosRankSum=1.253;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:63,9:72:99:135,0,2099
21    11039627    rs607693    T    C    131.55    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.742;QD=18.79;ReadPosRankSum=-0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:1,6:7:16.30:161,0,16
21    11047308    rs2698592    C    T    103.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=14.77;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:3,4:7:99:133,0,105
21    11047441    rs3906136    T    C    900.87    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=3.777;DB;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=59.43;MQ0=0;MQRankSum=-0.866;QD=8.42;ReadPosRankSum=0.389;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:76,30:107:99:931,0,2783
21    11047496    rs467861    G    A    7543.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=5.179;DB;DP=241;Dels=0.0;FS=2.729;HRun=0;HaplotypeScore=4.3983;MQ=59.52;MQ0=0;MQRankSum=-1.489;QD=31.3;ReadPosRankSum=0.125;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    1/1:17,224:241:99:7543,114,0
21    11047760    rs455348    C    A    539.66    PASS    AB=0.095;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.258;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9996;MQ=43.48;MQ0=0;MQRankSum=-1.617;QD=25.7;ReadPosRankSum=0.779;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:2,19:21:21.60:570,0,22
21    11049228    rs1406584    A    C    177.90    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9995;MQ=45.11;MQ0=1;MQRankSum=0.742;QD=22.24;ReadPosRankSum=0.742;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:1,7:8:18.95:208,0,19
21    11049231    rs2259246    T    C    128.76    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9995;MQ=45.11;MQ0=1;MQRankSum=0.198;QD=16.1;ReadPosRankSum=-0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:2,6:8:61.19:159,0,61
21    11049300    .    C    T    57.17    QDFilter2    AB=0.875;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.291;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=42.15;MQ0=0;MQRankSum=-0.14;QD=1.19;ReadPosRankSum=-0.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:42,6:48:87.17:87,0,1503
21    11049343    .    C    T    238.85    PASS    AB=0.86;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.965;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.75;MQ0=0;MQRankSum=1.375;QD=2.1;ReadPosRankSum=-0.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:98,16:114:99:269,0,3456
21    11049364    rs468502    C    T    360.49    PASS    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.794;DB;DP=162;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.9884;MQ=42.76;MQ0=0;MQRankSum=-2.164;QD=2.23;ReadPosRankSum=-0.073;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:138,23:162:99:390,0,4961
21    11049395    rs467462    T    C    6367.79    HaplotypeScoreFilter13    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=6.498;DB;DP=234;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=28.3978;MQ=42.34;MQ0=2;MQRankSum=2.623;QD=27.21;ReadPosRankSum=3.111;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:39,194:234:99:6368,0,691
21    11049404    rs2259244    C    G    4904.14    HaplotypeScoreFilter13    AB=0.268;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.339;DB;DP=235;Dels=0.0;FS=0.837;HRun=0;HaplotypeScore=32.6964;MQ=41.56;MQ0=3;MQRankSum=0.874;QD=20.78;ReadPosRankSum=2.062;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:63,172:235:99:4904,0,1630
21    11049455    .    G    A    357.32    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.847;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DP=250;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=16.8418;MQ=35.15;MQ0=20;MQRankSum=-0.967;QD=1.43;ReadPosRankSum=-0.553;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:211,38:250:99:387,0,5721
21    11049503    rs7280925    T    A    1379.66    HaplotypeScoreFilter13;MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=5.701;DB;DP=225;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=13.8837;MQ=26.49;MQ0=40;MQRankSum=-1.094;QD=6.13;ReadPosRankSum=1.435;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:152,73:225:99:1410,0,3489
21    11049516    rs468629    G    A    5786.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=231;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6482;MQ=26.02;MQ0=45;QD=25.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    1/1:0,231:231:99:5787,523,0
21    11049763    rs3879383    G    A    481.30    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.326;DB;DP=44;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=47.24;MQ0=0;MQRankSum=0.578;QD=10.94;ReadPosRankSum=0.265;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:27,17:44:99:511,0,913
21    11049848    .    G    T    30.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=48.91;MQ0=0;MQRankSum=1.231;QD=6.08;ReadPosRankSum=-0.358;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:3,2:5:60.40:60,0,96
21    11057931    rs71226990    C    A    133.92    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.9996;MQ=37.79;MQ0=1;MQRankSum=-1.788;QD=10.3;ReadPosRankSum=-1.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:8,5:13:99:164,0,235
21    11057949    rs74666145    T    C    54.26    MQFilter40    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=1.559;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.88;MQ0=1;MQRankSum=-0.709;QD=2.58;ReadPosRankSum=-1.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:16,5:21:84.25:84,0,569
21    11058008    rs209033    G    C    1665.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.51;MQ0=4;QD=33.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    1/1:1,48:49:99:1698,132,0
21    11058025    rs3877863    T    C    1439.57    MQFilter40    AB=0.123;AC=1;AF=0.50;AN=2;BaseQRankSum=1.51;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.42;MQ0=7;MQRankSum=0.503;QD=25.26;ReadPosRankSum=-0.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:7,50:57:99:1470,0,125
21    11058043    rs2838187    A    T    1270.33    MQFilter40    AB=0.145;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.642;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=37.23;MQ0=10;MQRankSum=-1.801;QD=23.1;ReadPosRankSum=2.427;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:8,47:55:99:1300,0,130
21    11058085    rs2838188    C    A    208.30    MQFilter40    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.018;DB;DP=61;Dels=0.0;FS=10.648;HRun=1;HaplotypeScore=0.0;MQ=33.32;MQ0=13;MQRankSum=-1.716;QD=3.41;ReadPosRankSum=-1.096;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:42,19:61:99:238,0,917
21    11058119    rs2261873    C    T    960.20    MQFilter40    AB=0.118;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.794;DB;DP=77;Dels=0.0;FS=7.691;HRun=0;HaplotypeScore=1.2434;MQ=29.41;MQ0=15;MQRankSum=-4.534;QD=12.47;ReadPosRankSum=-0.663;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:9,67:77:99:990,0,185
21    11058226    rs4913558    G    C    734.42    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=1.222;DB;DP=170;Dels=0.0;FS=2.727;HRun=0;HaplotypeScore=34.6747;MQ=37.04;MQ0=35;MQRankSum=3.68;QD=4.32;ReadPosRankSum=1.654;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:136,34:170:99:764,0,2281
21    11058227    rs2775343    T    A    1104.76    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DB;DP=169;Dels=0.0;FS=3.486;HRun=0;HaplotypeScore=35.673;MQ=37.04;MQ0=35;MQRankSum=-7.709;QD=6.5;ReadPosRankSum=-2.894;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:60,109:169:99:1135,0,1741
21    11058229    rs55883018    T    C    847.13    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.567;DB;DP=171;Dels=0.0;FS=7.697;HRun=1;HaplotypeScore=34.9391;MQ=37.14;MQ0=36;MQRankSum=-8.465;QD=4.95;ReadPosRankSum=-1.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:72,98:171:99:877,0,2028
21    11058349    rs209032    T    G    48.23    MQFilter40;QDFilter2    AB=0.905;AC=1;AF=0.50;AN=2;BaseQRankSum=1.478;DB;DP=116;Dels=0.0;FS=1.801;HRun=0;HaplotypeScore=10.551;MQ=38.7;MQ0=2;MQRankSum=4.079;QD=0.42;ReadPosRankSum=-0.557;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:105,11:116:78.23:78,0,2560
21    11058391    .    G    C    50.55    QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=0.368;DP=45;Dels=0.0;FS=3.651;HRun=0;HaplotypeScore=2.9977;MQ=43.15;MQ0=2;MQRankSum=0.894;QD=1.12;ReadPosRankSum=2.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:38,7:45:80.54:81,0,1029
21    11058404    rs113443682    A    ACT    740.34    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.353;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=101.1401;IndelType=I;MQ=45.37;MQ0=2;MQRankSum=-1.61;QD=25.53;ReadPosRankSum=1.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:6,21:21:99:779,0,147
21    11058430    rs3888404    G    T    63.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.832;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.9;MQ0=1;MQRankSum=-2.156;QD=2.37;ReadPosRankSum=0.108;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:18,9:27:93.93:94,0,613
21    11058460    rs10446117    G    A    91.73    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.803;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7892;MQ=44.15;MQ0=1;MQRankSum=-0.718;QD=4.37;ReadPosRankSum=1.733;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:12,9:21:99:122,0,350
21    11058464    rs2838189    G    A    91.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.031;DB;DP=18;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9578;MQ=45.98;MQ0=1;MQRankSum=-2.454;QD=5.06;ReadPosRankSum=1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474011    GT:AD:DP:GQ:PL    0/1:8,10:18:99:121,0,297
21    11097557    rs12482593    A    G    238    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.208;DB;DP=37;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=3.104;MQ=47.39;MQ0=0;MQRankSum=-3.02;QD=6.43;ReadPosRankSum=-3.416;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:19,18:37:99:268,0,610
21    11097574    rs55673353    T    A    407.13    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.929;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4761;MQ=45.67;MQ0=3;MQRankSum=-2.899;QD=7.4;ReadPosRankSum=-0.636;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:31,24:55:99:437,0,936
21    11097718    .    C    T    168.98    HaplotypeScoreFilter13;QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=2.531;DP=128;Dels=0.0;FS=0.945;HRun=0;HaplotypeScore=23.4908;MQ=44.02;MQ0=2;MQRankSum=-1.053;QD=1.32;ReadPosRankSum=-0.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:106,22:128:99:199,0,2571
21    11097719    rs12482628    A    G    2202.50    HaplotypeScoreFilter13    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.43;DB;DP=128;Dels=0.0;FS=1.756;HRun=1;HaplotypeScore=23.4908;MQ=44.02;MQ0=2;MQRankSum=-1.619;QD=17.21;ReadPosRankSum=0.166;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:32,96:128:99:2232,0,708
21    11097739    rs113501712    C    T    198.16    HaplotypeScoreFilter13;QDFilter2    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=0.167;DB;DP=112;Dels=0.0;FS=2.406;HRun=0;HaplotypeScore=15.5573;MQ=47.73;MQ0=1;MQRankSum=0.012;QD=1.77;ReadPosRankSum=0.755;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:94,18:112:99:228,0,2276
21    11097825    rs62210263    A    T    60.99    SnpCluster    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.578;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9795;MQ=42.95;MQ0=2;MQRankSum=-3.332;QD=2.35;ReadPosRankSum=1.466;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:8,11:26:90.99:91,0,297
21    11097830    rs77330564    A    C    91.42    MQFilter40;SnpCluster    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=38.63;MQ0=2;MQRankSum=-3.674;QD=4.35;ReadPosRankSum=2.106;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:8,13:21:99:121,0,283
21    11097831    rs78866140    G    C    91.43    MQFilter40;SnpCluster    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=38.63;MQ0=2;MQRankSum=-3.674;QD=4.35;ReadPosRankSum=2.023;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:8,13:21:99:121,0,275
21    11098626    rs1967649    G    A    556.17    HaplotypeScoreFilter13    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=4.724;DB;DP=85;Dels=0.0;FS=2.639;HRun=0;HaplotypeScore=26.379;MQ=42.68;MQ0=2;MQRankSum=3.033;QD=6.54;ReadPosRankSum=-0.623;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:60,25:85:99:586,0,1173
21    11098674    rs1752238    T    C    2930.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7626;MQ=47.77;MQ0=2;QD=25.7;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    1/1:0,112:114:99:2963,247,0
21    11098723    rs73151874    T    C    57.32    QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.1;DB;DP=160;Dels=0.0;FS=4.695;HRun=1;HaplotypeScore=4.8556;MQ=48.71;MQ0=0;MQRankSum=-5.949;QD=0.36;ReadPosRankSum=-3.636;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:138,22:160:87.31:87,0,3020
21    11098728    rs113315187    C    T    139.35    QDFilter2    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=1.713;DB;DP=158;Dels=0.0;FS=2.579;HRun=0;HaplotypeScore=4.9598;MQ=49.12;MQ0=0;MQRankSum=-6.379;QD=0.88;ReadPosRankSum=-2.821;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:135,23:158:99:169,0,2839
21    11098827    rs79274499    C    T    199.91    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=3.158;DB;DP=61;Dels=0.0;FS=4.801;HRun=0;HaplotypeScore=0.5784;MQ=45.58;MQ0=4;MQRankSum=-2.539;QD=3.28;ReadPosRankSum=-0.764;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:37,19:61:99:230,0,375
21    11098863    rs75318310    A    G    111.36    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=2.547;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.28;MQ0=3;MQRankSum=-2.776;QD=3.37;ReadPosRankSum=-1.812;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:19,13:32:99:141,0,459
21    11098920    rs78230864    A    G    42    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.88;MQ0=2;MQRankSum=-2.219;QD=3.0;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=BAGE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470054    GT:AD:DP:GQ:PL    0/1:9,5:14:71.99:72,0,320
21    14410529    rs142026412    A    G    219.97    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.835;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=47.1;MQ0=0;MQRankSum=-0.34;QD=9.56;ReadPosRankSum=-1.398;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:11,12:23:99:250,0,280
21    14410569    rs145096695    G    T    381.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.939;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.91;MQ0=0;MQRankSum=0.174;QD=10.61;ReadPosRankSum=1.376;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:18,18:36:99:412,0,545
21    14410802    rs58168442    C    T    49.32    MQFilter40;QDFilter2    AB=0.731;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=26;Dels=0.0;FS=2.963;HRun=1;HaplotypeScore=0.9578;MQ=19.68;MQ0=10;MQRankSum=-0.113;QD=1.9;ReadPosRankSum=-0.793;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:19,7:26:79.31:79,0,252
21    14414653    rs2821605    A    G    113.73    MQFilter40    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.537;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.07;MQ0=3;MQRankSum=-2.098;QD=5.42;ReadPosRankSum=-1.415;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:11,10:21:99:144,0,312
21    14414902    rs2821609    G    A    577.07    PASS    AB=0.831;AC=1;AF=0.50;AN=2;BaseQRankSum=3.28;DB;DP=232;DS;Dels=0.0;FS=23.528;HRun=0;HaplotypeScore=1.9748;MQ=52.57;MQ0=0;MQRankSum=-2.634;QD=2.49;ReadPosRankSum=1.616;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:192,39:232:99:607,0,5946
21    14414959    rs8132212    C    T    1007.17    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.064;DB;DP=218;DS;Dels=0.0;FS=40.439;HRun=3;HaplotypeScore=2.4115;MQ=48.42;MQ0=0;MQRankSum=-1.146;QD=4.62;ReadPosRankSum=0.371;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:159,59:218:99:1037,0,5018
21    14415004    rs147657250    T    G    193.44    QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.234;DB;DP=155;Dels=0.0;FS=3.737;HRun=0;HaplotypeScore=1.9467;MQ=41.7;MQ0=21;MQRankSum=-3.816;QD=1.25;ReadPosRankSum=-0.036;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:126,29:155:99:223,0,3392
21    14415022    .    A    G    133.83    MQFilter40;QDFilter2    AB=0.856;AC=1;AF=0.50;AN=2;BaseQRankSum=2.479;DP=139;Dels=0.0;FS=21.023;HRun=0;HaplotypeScore=0.9789;MQ=34.71;MQ0=32;MQRankSum=-3.089;QD=0.96;ReadPosRankSum=1.573;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:119,20:139:99:164,0,2582
21    14417673    rs4553912    C    A    263.37    MQFilter40    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.987;DB;DP=55;Dels=0.0;FS=2.915;HRun=2;HaplotypeScore=0.0;MQ=30.99;MQ0=11;MQRankSum=-3.501;QD=4.79;ReadPosRankSum=-0.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:26,24:55:99:293,0,682
21    14417709    rs3914050    T    C    61.62    MQFilter40    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.739;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.76;MQ0=0;MQRankSum=-3.556;QD=2.93;ReadPosRankSum=0.81;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:10,11:21:91.62:92,0,345
21    14417713    rs4125470    G    C    37.21    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.022;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=39.94;MQ0=0;MQRankSum=-3.599;QD=2.07;ReadPosRankSum=0.666;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:8,10:18:67.20:67,0,287
21    14418486    rs2821621    T    C    415.87    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=6.043;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9916;MQ=41.17;MQ0=13;MQRankSum=-6.48;QD=3.68;ReadPosRankSum=3.824;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:67,46:113:99:446,0,2182
21    14418543    rs71318482    G    C    664.65    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=3.37;DB;DP=236;Dels=0.0;FS=5.021;HRun=0;HaplotypeScore=3.6561;MQ=43.23;MQ0=30;MQRankSum=-10.497;QD=2.82;ReadPosRankSum=-0.698;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:143,93:236:99:695,0,4367
21    14418567    rs4818594    A    G    1020.78    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.703;DB;DP=250;DS;Dels=0.0;FS=1.98;HRun=0;HaplotypeScore=3.7547;MQ=42.38;MQ0=23;MQRankSum=-10.453;QD=4.08;ReadPosRankSum=-0.678;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ANKRD30BP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435744    GT:AD:DP:GQ:PL    0/1:150,100:250:99:1051,0,4519
21    14424012    rs3119469    G    A    600.27    HaplotypeScoreFilter13;MQFilter40    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=3.077;DB;DP=116;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=14.4152;MQ=35.84;MQ0=7;MQRankSum=-5.672;QD=5.13;ReadPosRankSum=-0.799;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384369    GT:AD:DP:GQ:PL    0/1:63,53:116:99:630,0,1067
21    14424042    rs10439726    G    A    1140.45    MQFilter40    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=4.898;DB;DP=175;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=9.1005;MQ=33.07;MQ0=18;MQRankSum=-4.893;QD=6.52;ReadPosRankSum=0.372;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384369    GT:AD:DP:GQ:PL    0/1:87,88:175:99:1170,0,2006
21    14424092    rs1054924    T    C    2152.60    MQFilter40    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=1.697;DB;DP=249;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.5521;MQ=36.52;MQ0=28;MQRankSum=-2.192;QD=8.61;ReadPosRankSum=-0.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384369    GT:AD:DP:GQ:PL    0/1:143,106:249:99:2183,0,3377
21    14424382    rs1054929    G    A    545.78    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.055;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7005;MQ=45.92;MQ0=2;MQRankSum=-1.101;QD=11.61;ReadPosRankSum=-2.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=snRNA;SNPEFF_GENE_NAME=U6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384369    GT:AD:DP:GQ:PL    0/1:25,22:47:99:576,0,765
21    14468831    .    C    T    140.75    MQFilter40;QDFilter2    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.783;DP=140;Dels=0.0;FS=11.69;HRun=0;HaplotypeScore=0.7887;MQ=25.54;MQ0=25;MQRankSum=1.151;QD=1.01;ReadPosRankSum=-2.875;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF355P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427301    GT:AD:DP:GQ:PL    0/1:120,20:140:99:171,0,2119
21    14722978    rs9982443    G    A    144.47    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.026;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=41.2;MQ0=0;MQRankSum=1.581;QD=4.82;ReadPosRankSum=0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=FGF7P2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332473    GT:AD:DP:GQ:PL    0/1:24,6:30:99:174,0,568
21    14756794    rs2792526    G    A    1095.06    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.417;DB;DP=112;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4972;MQ=44.01;MQ0=6;MQRankSum=-2.244;QD=9.78;ReadPosRankSum=-0.746;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:64,48:112:99:1125,0,1829
21    14756895    rs137932371    T    C    1650.51    MQFilter40    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.512;DB;DP=144;Dels=0.0;FS=3.13;HRun=0;HaplotypeScore=2.827;MQ=38.22;MQ0=6;MQRankSum=-0.022;QD=11.46;ReadPosRankSum=0.649;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:71,72:144:99:1681,0,1801
21    14756973    rs2821831    T    A    1260.97    MQFilter40    AB=0.497;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.67;DB;DP=161;Dels=0.0;FS=3.533;HRun=0;HaplotypeScore=1.891;MQ=30.3;MQ0=18;MQRankSum=-1.12;QD=7.83;ReadPosRankSum=1.849;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:80,81:161:99:1291,0,1511
21    14757043    rs2257596    T    C    1314.41    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.224;DB;DP=135;Dels=0.0;FS=0.706;HRun=1;HaplotypeScore=1.5767;MQ=33.41;MQ0=6;MQRankSum=-0.144;QD=9.74;ReadPosRankSum=-1.941;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:75,60:135:99:1344,0,1709
21    14757095    .    G    GT    1582.82    PASS    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.453;DP=102;FS=0.782;HRun=6;HaplotypeScore=331.4988;IndelType=I;MQ=32.44;MQ0=13;MQRankSum=1.351;QD=12.46;ReadPosRankSum=-1.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:69,58:102:99:1622,0,1028
21    14757565    rs2821832    C    G    202.80    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.165;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.37;MQ0=0;MQRankSum=1.109;QD=14.49;ReadPosRankSum=0.225;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:6,8:14:99:233,0,173
21    14758516    rs2821833    T    A    330.08    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.111;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.67;MQ0=1;MQRankSum=0.073;QD=11.79;ReadPosRankSum=0.364;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:14,14:28:99:360,0,345
21    14758797    rs2821835    A    G    1037.18    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=0.607;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=46.06;MQ0=2;MQRankSum=-1.715;QD=14.41;ReadPosRankSum=1.692;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:34,38:72:99:1067,0,940
21    14760151    rs2775777    T    C    2832.79    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.97;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3839;MQ=33.16;MQ0=8;MQRankSum=0.797;QD=20.68;ReadPosRankSum=0.97;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    1/1:5,132:137:99:2866,244,0
21    14760203    rs2775779    C    T    1286.44    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=3.476;DB;DP=102;Dels=0.0;FS=0.78;HRun=2;HaplotypeScore=0.0;MQ=46.7;MQ0=0;MQRankSum=-0.432;QD=12.61;ReadPosRankSum=0.405;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309142    GT:AD:DP:GQ:PL    0/1:47,54:102:99:1316,0,1443
21    14793775    rs459040    A    G    65.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.31;MQ0=0;QD=21.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451052    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:97,9,0
21    14798451    rs455513    A    G    811.59    PASS    AB=0.388;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=49;Dels=0.0;FS=1.606;HRun=0;HaplotypeScore=0.9159;MQ=51.33;MQ0=0;MQRankSum=0.482;QD=16.56;ReadPosRankSum=-0.154;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451052    GT:AD:DP:GQ:PL    0/1:19,30:49:99:842,0,534
21    14798806    rs467453    T    G    844    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.26;MQ0=1;QD=30.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ANKRD30BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451052    GT:AD:DP:GQ:PL    1/1:0,28:28:72.19:877,72,0
21    14916664    rs7275581    A    G    307.98    MQFilter40    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=47;Dels=0.0;FS=9.64;HRun=0;HaplotypeScore=4.8567;MQ=24.1;MQ0=10;MQRankSum=1.295;QD=6.55;ReadPosRankSum=-1.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR4K11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431829    GT:AD:DP:GQ:PL    0/1:28,19:47:99:338,0,349
21    14916669    rs12481974    C    T    217.81    MQFilter40    AB=0.587;AC=1;AF=0.50;AN=2;BaseQRankSum=1.575;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8567;MQ=26.94;MQ0=9;MQRankSum=-0.143;QD=4.74;ReadPosRankSum=1.129;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR4K11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431829    GT:AD:DP:GQ:PL    0/1:27,19:46:99:248,0,506
21    14916824    rs7280211    T    A    718.02    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.913;DB;DP=40;Dels=0.0;FS=1.481;HRun=1;HaplotypeScore=0.9995;MQ=45.76;MQ0=0;MQRankSum=-0.621;QD=17.95;ReadPosRankSum=-1.118;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR4K11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431829    GT:AD:DP:GQ:PL    0/1:16,24:40:99:748,0,494
21    14917181    rs62215474    C    T    596.16    MQFilter40    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.142;DB;DP=65;Dels=0.0;FS=2.43;HRun=0;HaplotypeScore=0.0;MQ=35.01;MQ0=4;MQRankSum=-0.469;QD=9.17;ReadPosRankSum=0.123;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR4K11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431829    GT:AD:DP:GQ:PL    0/1:35,30:65:99:626,0,784
21    14917383    rs149355395    T    A    640.21    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.401;DB;DP=123;Dels=0.0;FS=4.119;HRun=0;HaplotypeScore=0.0;MQ=20.03;MQ0=48;MQRankSum=-0.92;QD=5.2;ReadPosRankSum=0.173;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=OR4K11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431829    GT:AD:DP:GQ:PL    0/1:75,47:123:99:670,0,614
21    14917605    rs2821924    A    G    229.42    MQFilter40    AB=0.724;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.3;MQ0=12;MQRankSum=0.144;QD=7.91;ReadPosRankSum=1.299;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP001465.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427446    GT:AD:DP:GQ:PL    0/1:21,8:29:99:259,0,301
21    15011825    rs2334580    T    A    147.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=15.14;MQ0=17;QD=4.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTED;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299443    GT:AD:DP:GQ:PL    1/1:0,30:30:18.03:180,18,0
21    15287314    rs2822250    A    G    228.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.27;MQ0=0;QD=32.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:262,21,0
21    15288872    rs12482765    T    A    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=16;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=7.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:70,6,0
21    15288950    rs2107365    A    G    386.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.18;MQ0=0;QD=29.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:420,36,0
21    15289026    rs438579    T    A    1019.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.16;MQ0=1;QD=29.98;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,34:34:87.26:1052,87,0
21    15289731    rs113336963    T    A    331.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.99;MQ0=0;QD=33.19;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:365,27,0
21    15289974    rs3115462    C    T    1997.70    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.7462;MQ=32.29;MQ0=8;QD=20.18;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,99:99:99:2031,177,0
21    15290259    rs2822255    G    A    732.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.65;MQ0=0;QD=36.62;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:765,57,0
21    15297474    rs2210212    A    T    1410.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=1.4942;MQ=53.43;MQ0=0;QD=22.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,61:62:99:1444,144,0
21    15297624    rs394632    C    T    3333.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=46.32;MQ0=0;QD=34.73;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000442192    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3334,256,0
21    15305887    rs9975995    C    A    170.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.83;MQ0=0;QD=34.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428576    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
21    15310354    rs432543    G    A    2110.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.88;MQ0=14;QD=20.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432875    GT:AD:DP:GQ:PL    1/1:0,102:102:99:2144,195,0
21    15310398    rs13052309    A    G    1951.07    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.35;MQ0=8;QD=20.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432875    GT:AD:DP:GQ:PL    1/1:1,92:93:99:1984,180,0
21    15310477    rs395993    A    C    424.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.18;MQ0=2;QD=21.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432875    GT:AD:DP:GQ:PL    1/1:0,20:20:47.94:458,48,0
21    15311609    rs13053047    T    A    1283.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=34.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1316,96,0
21    15326213    rs427055    T    C    82.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.73;MQ0=0;QD=27.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
21    15326329    rs381239    T    G    799.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.24;MQ0=0;QD=27.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:0,29:29:72.20:833,72,0
21    15326405    rs8127713    C    T    3359.32    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.516;DB;DP=105;Dels=0.0;FS=2.388;HRun=1;HaplotypeScore=2.7127;MQ=58.5;MQ0=0;MQRankSum=0.871;QD=31.99;ReadPosRankSum=0.921;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:4,101:105:99:3359,169,0
21    15347393    .    T    A    148.88    MQFilter40    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DP=53;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=37.01;MQ0=1;MQRankSum=-4.543;QD=2.81;ReadPosRankSum=-1.823;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    0/1:33,20:53:99:179,0,1111
21    15347442    .    T    A    486.38    MQFilter40    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=4.344;DP=127;Dels=0.01;FS=0.0;HRun=6;HaplotypeScore=3.5479;MQ=28.28;MQ0=4;MQRankSum=-3.3;QD=3.8;ReadPosRankSum=1.902;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    0/1:73,54:127:99:516,0,1415
21    15347506    rs113563731    T    C    1338.21    MQFilter40    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.542;DB;DP=250;DS;Dels=0.0;FS=24.966;HRun=2;HaplotypeScore=5.5788;MQ=32.87;MQ0=1;MQRankSum=-4.779;QD=5.35;ReadPosRankSum=-1.211;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    0/1:128,121:250:99:1368,0,2870
21    15347563    rs112331177    C    T    606.81    MQFilter40    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=1.44;DB;DP=177;DS;Dels=0.0;FS=14.966;HRun=1;HaplotypeScore=0.0;MQ=36.66;MQ0=9;MQRankSum=-5.889;QD=3.43;ReadPosRankSum=1.085;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    0/1:105,72:177:99:637,0,2522
21    15347604    rs78467061    G    C    3042.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.86;DB;DP=139;DS;Dels=0.0;FS=2.598;HRun=0;HaplotypeScore=7.0787;MQ=41.85;MQ0=9;MQRankSum=5.757;QD=21.73;ReadPosRankSum=3.349;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:45,94:139:99:3075,117,0
21    15347608    rs371366    C    T    3173.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=139;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.0257;MQ=42.06;MQ0=9;QD=22.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:3,136:139:99:3206,250,0
21    15347762    rs62208208    G    T    571.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6639;MQ=26.31;MQ0=44;QD=7.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:32,44:77:51.14:604,51,0
21    15347766    rs62208209    A    T    598.95    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6639;MQ=22.91;MQ0=50;MQRankSum=1.383;QD=7.58;ReadPosRankSum=-1.115;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:51,28:79:54.15:632,54,0
21    15347792    rs62208210    G    A    287.81    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.475;DB;DP=104;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.3286;MQ=9.66;MQ0=86;MQRankSum=0.773;QD=2.77;ReadPosRankSum=-2.318;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:87,17:104:30.07:321,30,0
21    15347853    rs73894327    T    C    423.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.75;MQ0=144;QD=2.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:98,62:160:42.10:457,42,0
21    15347859    .    A    G    439.43    MQFilter40    AC=2;AF=1.00;AN=2;DP=171;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.77;MQ0=155;QD=2.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:142,29:171:42.12:472,42,0
21    15347959    .    T    C    74.11    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;DP=105;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.66;MQ0=101;QD=0.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:76,29:105:12:107,12,0
21    15347960    .    G    A    74.11    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;DP=105;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=5.66;MQ0=101;QD=0.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:98,7:105:12:107,12,0
21    15347964    .    G    C    101.24    MQFilter40;QDFilter2;SnpCluster    AC=2;AF=1.00;AN=2;DP=107;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.61;MQ0=103;QD=0.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:98,9:107:12.03:134,12,0
21    15347971    .    G    A    68.27    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=99;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=5.05;MQ0=96;QD=0.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:91,8:99:9.02:100,9,0
21    15347978    .    C    T    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DP=91;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=4.3;MQ0=89;QD=0.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:73,18:91:6.02:67,6,0
21    15347994    rs145158603    A    G    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=4.67;MQ0=75;QD=0.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:70,7:77:6.02:67,6,0
21    15348008    rs147135513    T    C    35.63    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=5.21;MQ0=60;QD=0.57;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:55,7:62:6.02:67,6,0
21    15352253    rs56270809    A    C    371.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=30.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD20A11P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344693    GT:AD:DP:GQ:PL    1/1:0,12:12:33.09:405,33,0
21    15373568    rs1297088    G    A    200.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.97;MQ0=0;QD=25.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NF1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457709    GT:AD:DP:GQ:PL    1/1:0,8:8:21.03:233,21,0
21    15377728    rs139893964    AT    A    141.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=7;HaplotypeScore=14.5863;IndelType=D;MQ=49.49;MQ0=0;QD=23.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=NF1P3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457709    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:184,18,0
21    15441017    .    A    G    34.23    MQFilter40;QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.763;DP=157;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.55;MQ0=142;MQRankSum=-0.588;QD=0.22;ReadPosRankSum=-0.588;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP001347.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359341    GT:AD:DP:GQ:PL    0/1:138,19:157:64.22:64,0,268
21    15441060    rs146140377    A    G    124.12    MQFilter40;QDFilter2    AB=0.752;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.662;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.5;MQ0=112;MQRankSum=-1.664;QD=0.91;ReadPosRankSum=-0.333;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP001347.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359341    GT:AD:DP:GQ:PL    0/1:103,34:137:99:154,0,566
21    15441125    .    G    A    125.62    MQFilter40;QDFilter2    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=4.04;DP=121;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9138;MQ=24.01;MQ0=70;MQRankSum=-2.286;QD=1.04;ReadPosRankSum=1.618;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP001347.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359341    GT:AD:DP:GQ:PL    0/1:88,33:121:99:156,0,1358
21    15441151    rs149784081    C    A    96.67    MQFilter40;QDFilter2    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=2.259;DB;DP=111;Dels=0.0;FS=4.151;HRun=1;HaplotypeScore=0.7887;MQ=34.44;MQ0=41;MQRankSum=-1.798;QD=0.87;ReadPosRankSum=-1.679;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP001347.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359341    GT:AD:DP:GQ:PL    0/1:84,27:111:99:127,0,2019
21    15441192    .    A    AT    287.47    PASS    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=6.187;DP=110;FS=34.064;HRun=2;HaplotypeScore=530.2107;IndelType=I;MQ=47.7;MQ0=7;MQRankSum=-3.316;QD=2.38;ReadPosRankSum=-0.292;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP001347.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359341    GT:AD:DP:GQ:PL    0/1:102,19:110:99:326,0,3091
21    15441198    rs78112713    G    A    218.47    QDFilter2    AB=0.849;AC=1;AF=0.50;AN=2;BaseQRankSum=1.68;DB;DP=126;Dels=0.0;FS=34.161;HRun=0;HaplotypeScore=1.4105;MQ=48.86;MQ0=5;MQRankSum=-4.55;QD=1.73;ReadPosRankSum=0.983;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP001347.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359341    GT:AD:DP:GQ:PL    0/1:107,19:126:99:248,0,3493
21    15441201    rs147863214    A    C    199.74    QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.926;DB;DP=132;Dels=0.0;FS=37.101;HRun=0;HaplotypeScore=1.4105;MQ=49.32;MQ0=6;MQRankSum=-4.43;QD=1.51;ReadPosRankSum=1.805;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP001347.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359341    GT:AD:DP:GQ:PL    0/1:112,20:132:99:230,0,3726
21    15441216    rs115377114    C    A    187.75    QDFilter2    AB=0.812;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.272;DB;DP=149;Dels=0.0;FS=32.968;HRun=0;HaplotypeScore=1.7882;MQ=49.59;MQ0=5;MQRankSum=-5.761;QD=1.26;ReadPosRankSum=2.08;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP001347.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359341    GT:AD:DP:GQ:PL    0/1:121,28:149:99:218,0,4211
21    15481157    rs1136522    T    C    388.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.3;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344577    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:421,33,0
21    15481234    rs7279700    C    T    1217.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.88;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344577    GT:AD:DP:GQ:PL    1/1:0,33:33:99:1250,99,0
21    15481365    rs7278737    G    T    3707.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=32.52;SNPEFF_AMINO_ACID_CHANGE=D444E;SNPEFF_CODON_CHANGE=gaC/gaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_15481134_15481401;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536861    GT:AD:DP:GQ:PL    1/1:0,112:114:99:3708,277,0
21    15516898    rs2822431    C    T    738.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=36.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344577    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:772,60,0
21    15516948    rs2822432    C    T    1656.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=59.5;MQ0=0;QD=36.02;SNPEFF_AMINO_ACID_CHANGE=E431K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_15516944_15517120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536861    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1690,129,0
21    15516976    rs7283442    T    A    2228.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=32.78;SNPEFF_AMINO_ACID_CHANGE=R421S;SNPEFF_CODON_CHANGE=agA/agT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_15516944_15517120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPI;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000536861    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2262,166,0
21    15554030    rs2822438    T    C    571.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344577    GT:AD:DP:GQ:PL    1/1:0,17:17:45.15:604,45,0
21    15567892    rs417044    A    G    362.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LIPI;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344577    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:395,33,0
21    15588775    rs56113127    G    A    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400577    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
21    15596772    rs409782    T    G    1343.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.207;DB;DP=42;Dels=0.0;FS=2.77;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.738;QD=31.99;ReadPosRankSum=-0.266;SNPEFF_AMINO_ACID_CHANGE=L116V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_15596759_15596858;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400577    GT:AD:DP:GQ:PL    1/1:2,40:42:66.59:1377,67,0
21    15596882    rs410052    T    C    1074.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461088    GT:AD:DP:GQ:PL    1/1:0,28:28:84.27:1108,84,0
21    15599142    rs4817028    A    G    1647.90    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.661;DB;DP=96;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.8963;MQ=55.64;MQ0=0;MQRankSum=0.507;QD=17.17;ReadPosRankSum=-1.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400577    GT:AD:DP:GQ:PL    0/1:45,51:96:99:1678,0,1437
21    15599144    rs2822444    T    C    1273.58    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.205;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4362;MQ=55.57;MQ0=0;MQRankSum=0.994;QD=12.86;ReadPosRankSum=1.409;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400577    GT:AD:DP:GQ:PL    0/1:54,45:99:99:1304,0,1831
21    15646397    rs8129984    A    G    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467409    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:80,6,0
21    15659778    rs1014538    C    T    320.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463099    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:354,27,0
21    15660716    rs1153305    G    A    2174.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463099    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2208,160,0
21    15663777    rs71330056    A    AGTGTGT    1017.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=190.3741;IndelType=I;MQ=40.55;MQ0=0;QD=42.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471902    GT:AD:DP:GQ:PL    1/1:15,4:24:45.15:1059,45,0
21    15671655    rs1297119    C    T    1144.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463099    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1178,90,0
21    15671844    rs2822558    G    A    1390.42    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=95;Dels=0.0;FS=0.784;HRun=1;HaplotypeScore=1.6553;MQ=59.76;MQ0=0;MQRankSum=0.411;QD=14.64;ReadPosRankSum=-0.557;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463099    GT:AD:DP:GQ:PL    0/1:46,49:95:99:1420,0,1402
21    15678312    rs1153319    G    T    157.21    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=22.46;ReadPosRankSum=1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467409    GT:AD:DP:GQ:PL    0/1:2,5:7:61.81:187,0,62
21    15685182    rs887773    T    C    65.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.55;QD=9.41;ReadPosRankSum=0.55;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ABCC13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463099    GT:AD:DP:GQ:PL    0/1:4,3:7:95.89:96,0,138
21    15685452    rs887772    T    G    134.92    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.56;MQ0=0;MQRankSum=-0.684;QD=16.86;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AF130358.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400574    GT:AD:DP:GQ:PL    0/1:3,5:8:92.25:165,0,92
21    15748186    rs2822642    C    A    232.34    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=26;Dels=0.0;FS=2.098;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.026;QD=8.94;ReadPosRankSum=0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478035    GT:AD:DP:GQ:PL    0/1:16,10:26:99:262,0,460
21    15755349    rs7281846    T    C    716.87    PASS    AB=0.38;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.427;DB;DP=50;Dels=0.0;FS=1.318;HRun=4;HaplotypeScore=2.6147;MQ=58.78;MQ0=0;MQRankSum=-0.339;QD=14.34;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSPA13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285667    GT:AD:DP:GQ:PL    0/1:19,31:50:99:747,0,530
21    15870638    rs2274796    C    T    246.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.102;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=11.21;ReadPosRankSum=0.604;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    0/1:12,9:22:99:277,0,429
21    15884949    rs3761320    A    T    1410.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=58.89;MQ0=0;QD=33.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1443,111,0
21    15884955    rs3761321    A    T    327.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.449;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.36;MQ0=0;MQRankSum=-0.016;QD=9.11;ReadPosRankSum=-0.462;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    0/1:20,16:36:99:358,0,689
21    15884974    rs10679308    C    CAAG    597.14    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=1.525;DB;DP=26;FS=0.0;HRun=0;HaplotypeScore=203.2607;IndelType=I;MQ=59.53;MQ0=0;MQRankSum=0.86;QD=22.97;ReadPosRankSum=0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    0/1:16,10:26:99:636,0,712
21    15885104    rs2049857    C    T    83.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
21    15893567    rs760344    A    T    206.30    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=22;Dels=0.0;FS=5.18;HRun=0;HaplotypeScore=0.0;MQ=58.08;MQ0=0;MQRankSum=1.655;QD=9.38;ReadPosRankSum=-1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    0/1:11,11:22:99:236,0,348
21    15893594    rs760345    T    C    563.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=58.55;MQ0=0;QD=35.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:596,45,0
21    15954593    rs2822786    G    A    623.38    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.089;DB;DP=66;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=1.018;QD=9.45;ReadPosRankSum=-0.39;SNPEFF_AMINO_ACID_CHANGE=P42L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_15954457_15954809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    0/1:38,28:66:99:653,0,1295
21    15954660    rs2822787    T    C    807.53    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.16;DB;DP=63;Dels=0.0;FS=5.255;HRun=0;HaplotypeScore=1.4538;MQ=59.7;MQ0=0;MQRankSum=0.174;QD=12.82;ReadPosRankSum=0.604;SNPEFF_AMINO_ACID_CHANGE=N20D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_15954457_15954809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMSN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285670    GT:AD:DP:GQ:PL    0/1:36,27:63:99:838,0,1149
21    15964920    rs466913    C    G    375.27    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.475;DB;DP=51;Dels=0.0;FS=4.847;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.287;QD=7.36;ReadPosRankSum=-1.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF165138.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400562    GT:AD:DP:GQ:PL    0/1:33,18:51:99:405,0,1065
21    15966421    rs460852    T    A    384.18    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.348;DB;DP=25;Dels=0.0;FS=5.226;HRun=3;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.695;QD=15.37;ReadPosRankSum=-0.174;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF165138.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400562    GT:AD:DP:GQ:PL    0/1:11,13:25:99:414,0,271
21    15974409    rs456067    T    C    665    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.23;SNPEFF_AMINO_ACID_CHANGE=N104D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_15974344_15974420;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF165138.7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435732    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:698,54,0
21    15988057    rs1380450    T    G    115.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF165138.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400562    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
21    16015155    rs467192    C    T    333.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF165138.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400562    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:366,27,0
21    16015250    rs458292    A    G    1594.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AF165138.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400562    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1628,126,0
21    16340289    rs2229741    C    T    428.21    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.797;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.797;QD=16.47;ReadPosRankSum=-0.643;SNPEFF_AMINO_ACID_CHANGE=G75;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_16333556_16340847;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRIP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318948    GT:AD:DP:GQ:PL    0/1:12,14:26:99:458,0,411
21    17115525    rs2823469    C    T    92.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.633;QD=9.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285679    GT:AD:DP:GQ:PL    0/1:6,4:10:99:123,0,200
21    17116193    rs140498112    C    T    550.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.744;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.332;QD=15.29;ReadPosRankSum=1.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285679    GT:AD:DP:GQ:PL    0/1:18,18:36:99:580,0,518
21    17199289    rs2026853    G    A    907.94    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.746;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.355;QD=15.13;ReadPosRankSum=0.207;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285679    GT:AD:DP:GQ:PL    0/1:29,31:60:99:938,0,924
21    17202780    rs2823502    A    C    240.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.454;DB;DP=24;Dels=0.0;FS=1.815;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.068;QD=10.01;ReadPosRankSum=-1.357;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285679    GT:AD:DP:GQ:PL    0/1:12,12:24:99:270,0,444
21    17202812    rs2823503    T    C    518.77    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.596;DB;DP=40;Dels=0.0;FS=3.546;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.571;QD=12.97;ReadPosRankSum=0.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285679    GT:AD:DP:GQ:PL    0/1:21,19:40:99:549,0,725
21    17220168    rs117646764    G    C    380.72    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.441;DB;DP=26;Dels=0.0;FS=2.269;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.333;QD=14.64;ReadPosRankSum=0.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285679    GT:AD:DP:GQ:PL    0/1:12,14:26:99:411,0,368
21    17221986    rs2823505    G    A    127.41    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=11.58;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285679    GT:AD:DP:GQ:PL    0/1:6,5:11:99:157,0,206
21    17247018    rs2252133    T    G    31.27    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=4.47;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285679    GT:AD:DP:GQ:PL    0/1:4,3:7:61.26:61,0,151
21    17447372    rs2823597    T    C    32.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.43;ReadPosRankSum=0.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C21orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400178    GT:AD:DP:GQ:PL    0/1:4,2:6:62.59:63,0,152
21    18814243    rs208893    T    C    464.13    HaplotypeScoreFilter13    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.791;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=18.0747;MQ=59.67;MQ0=0;MQRankSum=-1.309;QD=12.54;ReadPosRankSum=-0.482;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440664    GT:AD:DP:GQ:PL    0/1:19,18:37:99:494,0,528
21    18814246    rs5842640    G    GT    349.85    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.453;DB;DP=39;FS=0.0;HRun=12;HaplotypeScore=208.3411;IndelType=I;MQ=59.09;MQ0=0;MQRankSum=-1.247;QD=8.97;ReadPosRankSum=-1.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440664    GT:AD:DP:GQ:PL    0/1:22,17:39:99:389,0,231
21    18932934    rs979190    T    A    237.14    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=14;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.225;QD=16.94;ReadPosRankSum=-0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXADR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284878    GT:AD:DP:GQ:PL    0/1:6,8:14:99:267,0,198
21    18937758    rs437470    A    G    443.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=40;Dels=0.0;FS=1.249;HRun=0;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=1.422;QD=11.09;ReadPosRankSum=0.704;SNPEFF_AMINO_ACID_CHANGE=T75A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_18937746_18937805;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXADR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356275    GT:AD:DP:GQ:PL    0/1:24,16:40:99:474,0,723
21    18938080    rs1784913    G    T    249.16    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.69;MQ0=0;MQRankSum=-0.776;QD=13.11;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXADR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000306618    GT:AD:DP:GQ:PL    0/1:10,9:19:99:279,0,318
21    18966724    rs5842649    GACAA    G    308.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.016;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=63.4046;IndelType=D;MQ=58.33;MQ0=0;MQRankSum=0.312;QD=22.03;ReadPosRankSum=1.656;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496601    GT:AD:DP:GQ:PL    0/1:7,7:14:99:347,0,437
21    19165942    rs2824493    C    T    245.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405964    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
21    19169155    rs1047978    G    C    2934.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=34.12;SNPEFF_AMINO_ACID_CHANGE=D136E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_19168899_19169435;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf91;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284881    GT:AD:DP:GQ:PL    1/1:0,86:86:99:2967,220,0
21    19190427    rs243556    C    T    793    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf91;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284881    GT:AD:DP:GQ:PL    1/1:0,24:24:63.15:826,63,0
21    19506651    rs2824646    G    A    252.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=21.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHODL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400127    GT:AD:DP:GQ:PL    1/1:0,12:12:21.07:286,21,0
21    19506694    rs9977750    T    G    209.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHODL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400127    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:243,18,0
21    19506715    rs2824647    C    T    213.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHODL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400127    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
21    19642285    rs7276699    G    T    351.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.872;DB;DP=26;Dels=0.0;FS=1.81;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=13.53;ReadPosRankSum=-0.923;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHODL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299295    GT:AD:DP:GQ:PL    0/1:13,13:26:99:382,0,348
21    19642551    rs74740848    G    T    146.93    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=18.37;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHODL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299295    GT:AD:DP:GQ:PL    0/1:3,5:8:99:177,0,101
21    19666901    rs1540000    T    A    717.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.767;DB;DP=44;Dels=0.0;FS=14.322;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=16.32;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    0/1:22,22:44:99:748,0,674
21    19667126    rs13047771    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
21    19670118    rs2824721    G    A    908.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.65;SNPEFF_AMINO_ACID_CHANGE=P732S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_19670051_19670146;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:942,69,0
21    19685405    rs7281534    A    G    738.73    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=0.781;DB;DP=47;Dels=0.0;FS=1.652;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.166;QD=15.72;ReadPosRankSum=0.695;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    0/1:21,26:47:99:769,0,674
21    19687376    rs2144203    G    A    1004.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1037,78,0
21    19704296    rs1155847    C    T    486.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=32.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:519,42,0
21    19713821    rs2824751    C    T    857.83    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=2.386;DB;DP=57;Dels=0.0;FS=1.033;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.817;QD=15.05;ReadPosRankSum=-1.828;SNPEFF_AMINO_ACID_CHANGE=A491;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_19713730_19713865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    0/1:28,29:57:99:888,0,768
21    19770117    rs2824803    T    C    85.23    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=17.05;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    0/1:1,4:5:26.76:115,0,27
21    19770734    rs2824805    G    C    181.47    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.143;QD=16.5;ReadPosRankSum=-1.408;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284885    GT:AD:DP:GQ:PL    0/1:5,6:11:99:211,0,162
21    20230294    rs4816782    C    A    1940.26    MQFilter40    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=3.019;DB;DP=188;Dels=0.0;FS=3.114;HRun=1;HaplotypeScore=1.7753;MQ=29.49;MQ0=19;MQRankSum=0.28;QD=10.32;ReadPosRankSum=0.517;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358455    GT:AD:DP:GQ:PL    0/1:95,93:188:99:1970,0,1770
21    20230372    rs4816783    T    C    1352.47    MQFilter40    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=1.073;DB;DP=166;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.7;MQ0=21;MQRankSum=0.829;QD=8.15;ReadPosRankSum=0.09;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358455    GT:AD:DP:GQ:PL    0/1:97,69:166:99:1382,0,1881
21    20230390    rs4818432    G    A    1293.21    MQFilter40    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.534;DB;DP=160;Dels=0.0;FS=1.601;HRun=0;HaplotypeScore=2.6005;MQ=32.5;MQ0=19;MQRankSum=1.329;QD=8.08;ReadPosRankSum=-0.241;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358455    GT:AD:DP:GQ:PL    0/1:98,62:160:99:1323,0,2012
21    20230496    rs8127568    G    A    988.62    MQFilter40    AB=0.568;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=118;Dels=0.0;FS=10.55;HRun=3;HaplotypeScore=2.625;MQ=36.61;MQ0=15;MQRankSum=-0.839;QD=8.38;ReadPosRankSum=-1.032;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PPIAP22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358455    GT:AD:DP:GQ:PL    0/1:67,51:118:99:1019,0,1530
21    22656409    rs67288091    AT    A    247.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=34.4929;IndelType=D;MQ=60.98;MQ0=0;QD=22.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    1/1:1,10:11:30.05:290,30,0
21    22664619    rs60892739    T    A    315.61    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.043;DB;DP=24;Dels=0.0;FS=2.291;HRun=3;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=13.15;ReadPosRankSum=-0.521;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486367    GT:AD:DP:GQ:PL    0/1:11,13:24:99:346,0,352
21    22696837    rs232467    C    G    876.72    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.588;DB;DP=78;Dels=0.0;FS=1.907;HRun=0;HaplotypeScore=5.4921;MQ=59.7;MQ0=0;MQRankSum=0.526;QD=11.24;ReadPosRankSum=1.006;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:42,36:78:99:907,0,1299
21    22696881    rs11341216    TG    T    1614.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.0;HRun=4;HaplotypeScore=184.0419;IndelType=D;MQ=59.76;MQ0=0;QD=32.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    1/1:4,46:50:99:1657,138,0
21    22708169    rs11909613    T    C    31.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=7.76;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:2,2:4:61.01:61,0,70
21    22746187    rs232518    T    C    718.66    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.697;DB;DP=65;Dels=0.0;FS=7.182;HRun=2;HaplotypeScore=3.6413;MQ=59.0;MQ0=0;MQRankSum=-0.944;QD=11.06;ReadPosRankSum=0.62;SNPEFF_AMINO_ACID_CHANGE=L208P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_22746183_22746333;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:36,29:65:99:749,0,1144
21    22746509    rs232519    A    G    36.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000508782    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:67,0,31
21    22790600    rs986370    C    T    38.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.63;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:2,2:4:64.55:69,0,65
21    22790919    rs10470112    G    A    801.26    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.674;DB;DP=80;Dels=0.0;FS=4.063;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.571;QD=10.02;ReadPosRankSum=0.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:49,31:80:99:831,0,1751
21    22790936    rs986372    G    A    621.21    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.351;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.441;QD=10.71;ReadPosRankSum=0.457;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:36,22:58:99:651,0,1351
21    22804674    rs2826833    C    T    138.56    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.749;DB;DP=11;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=12.6;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:5,6:11:99:169,0,149
21    22839194    rs762441    G    C    74.46    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.64;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,149
21    22840820    rs1380596    G    A    33.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.54;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:4,2:6:63.23:63,0,137
21    22840930    rs2250501    A    C    280.84    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.747;DB;DP=20;Dels=0.0;FS=2.282;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.823;QD=14.04;ReadPosRankSum=-1.519;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:11,9:20:99:311,0,384
21    22841123    rs2250508    G    A    207.21    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=18;Dels=0.0;FS=4.868;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=11.51;ReadPosRankSum=1.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484983    GT:AD:DP:GQ:PL    0/1:11,7:18:99:237,0,368
21    22841261    rs2212629    T    A    36.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484983    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:67,0,33
21    22841283    rs2212630    C    G    91.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484983    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
21    22910026    rs2826889    T    C    80.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.01;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:2,3:5:67.36:110,0,67
21    22910051    rs2826890    A    G    88.92    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=11.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:4,4:8:99:119,0,140
21    22910116    rs2826891    C    T    387.23    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.651;QD=16.84;ReadPosRankSum=0.465;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:10,13:23:99:417,0,304
21    22910123    rs9979040    T    G    320.26    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.635;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.073;QD=11.86;ReadPosRankSum=1.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284894    GT:AD:DP:GQ:PL    0/1:12,15:27:99:350,0,392
21    26542097    rs2829593    T    A    343.93    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=21;Dels=0.0;FS=4.738;HRun=2;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;MQRankSum=-0.76;QD=16.38;ReadPosRankSum=0.76;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000233.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409758    GT:AD:DP:GQ:PL    0/1:9,11:21:99:374,0,238
21    26734491    rs34336476    T    TG    857.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=2;HaplotypeScore=161.3768;IndelType=I;MQ=34.82;MQ0=0;QD=37.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL13AP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425147    GT:AD:DP:GQ:PL    1/1:5,18:23:63.19:900,63,0
21    26734500    rs34812673    T    TG    821.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=142.4625;IndelType=I;MQ=29.95;MQ0=1;QD=41.06;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RPL13AP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425147    GT:AD:DP:GQ:PL    1/1:2,18:19:54.18:863,54,0
21    26960189    rs2829806    T    G    278    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419219    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:311,24,0
21    26961086    rs2829807    T    C    2769.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.38;MQ0=0;QD=37.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419219    GT:AD:DP:GQ:PL    1/1:0,74:74:99:2802,208,0
21    26965100    rs2829809    C    A    1441.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419219    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1475,114,0
21    26965148    rs1135638    G    A    2064.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.98;SNPEFF_AMINO_ACID_CHANGE=G289;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_26965124_26965277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419219    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2097,153,0
21    26965205    rs1057885    T    C    1929.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=V270;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_26965124_26965277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419219    GT:AD:DP:GQ:PL    1/1:0,61:61:99:1962,144,0
21    26966317    rs13048408    A    G    655.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307301    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:688,54,0
21    26969703    rs1135618    T    C    754.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.44;SNPEFF_AMINO_ACID_CHANGE=K194;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_26969614_26969726;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000419219    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:788,63,0
21    26972342    rs2829828    A    G    217.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307301    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
21    26973663    .    A    ATATACT    4594.63    PASS    AC=2;AF=1.00;AN=2;DP=47;FS=0.0;HRun=0;HaplotypeScore=181.9491;IndelType=I;MQ=38.03;MQ0=0;QD=97.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307301    GT:AD:DP:GQ:PL    1/1:4,38:47:99:4595,135,0
21    26975905    rs725494    A    G    77.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307301    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:109,9,0
21    26975995    rs725493    G    A    342.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307301    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:376,27,0
21    26976250    rs7278164    A    G    1074.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307301    GT:AD:DP:GQ:PL    1/1:0,30:30:81.26:1108,81,0
21    26978950    rs3989369    A    G    919.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_AMINO_ACID_CHANGE=S31P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_26978761_26978967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000307301    GT:AD:DP:GQ:PL    1/1:0,29:29:69.22:952,69,0
21    26979628    rs9653688    G    A    408.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307301    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:442,36,0
21    27141273    rs56048433    C    CATTT    1550.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=91.0381;IndelType=I;MQ=50.46;MQ0=0;QD=51.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABPA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354828    GT:AD:DP:GQ:PL    1/1:4,22:23:66.22:1593,66,0
21    27254194    rs2829966    C    T    164.42    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.034;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=55.66;MQ0=0;MQRankSum=-0.278;QD=14.95;ReadPosRankSum=0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346798    GT:AD:DP:GQ:PL    0/1:4,7:11:99:194,0,123
21    27326756    rs2829996    T    A    89.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346798    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
21    27326859    rs2829997    G    A    251.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346798    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:284,24,0
21    27327100    rs417676    G    A    81.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346798    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
21    27327862    rs2251337    G    C    670.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346798    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:704,51,0
21    27328175    rs440666    T    C    280.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346798    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:313,24,0
21    27369481    rs2051504    C    T    151.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491395    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:185,15,0
21    27382362    rs11455808    A    AG    826    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=1;HaplotypeScore=74.2166;IndelType=I;MQ=58.8;MQ0=0;QD=41.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346798    GT:AD:DP:GQ:PL    1/1:0,20:20:57.16:868,57,0
21    27382417    rs2409166    C    G    382.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.54;MQ0=0;QD=31.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346798    GT:AD:DP:GQ:PL    1/1:0,11:12:30.10:415,30,0
21    27923462    rs222959    G    A    756.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=32.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYYR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299340    GT:AD:DP:GQ:PL    1/1:0,23:23:57.19:789,57,0
21    28210657    rs229042    T    C    846.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517452    GT:AD:DP:GQ:PL    1/1:0,23:23:69.21:880,69,0
21    28211094    rs229043    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517452    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
21    28212760    rs436525    G    A    1111.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=P500;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_28212595_28212881;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1145,87,0
21    28215826    .    C    CACA    2403.49    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.077;DP=38;FS=0.0;HRun=0;HaplotypeScore=226.9059;IndelType=I;MQ=33.64;MQ0=0;MQRankSum=-1.639;QD=63.25;ReadPosRankSum=0.515;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    1/1:9,28:38:58.43:2446,58,0
21    28215836    rs57269482    GC    G    1118.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DB;DP=33;FS=0.0;HRun=2;HaplotypeScore=233.4;IndelType=D;MQ=31.75;MQ0=0;MQRankSum=-1.733;QD=33.89;ReadPosRankSum=0.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    1/1:4,29:33:51.31:1160,51,0
21    28215987    rs58586842    T    C    800.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.98;MQ0=0;QD=34.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:833,66,0
21    28216038    rs422803    C    A    985.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.01;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1019,78,0
21    28216059    rs400852    A    G    801.36    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.01;MQ0=0;MQRankSum=1.271;QD=26.71;ReadPosRankSum=1.155;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000517452    GT:AD:DP:GQ:PL    1/1:1,29:30:31.42:834,31,0
21    28216066    rs370850    C    T    829.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.29;MQ0=0;QD=31.89;SNPEFF_AMINO_ACID_CHANGE=W4*;SNPEFF_CODON_CHANGE=tGg/tAg;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_21_28216061_28216096;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000517452    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:862,66,0
21    28216445    rs408358    A    C    131.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
21    28216674    rs409630    G    C    124.37    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.55;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=V200;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_28216544_28217728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    0/1:1,7:8:19.30:154,0,19
21    28216692    rs445784    G    T    234.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=29.27;SNPEFF_AMINO_ACID_CHANGE=V194;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_28216544_28217728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:267,21,0
21    28217178    rs434857    T    G    206.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.79;SNPEFF_AMINO_ACID_CHANGE=P32;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_28216544_28217728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000284984    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:239,21,0
21    28217320    rs402007    C    G    113.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.48;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ADAMTS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464589    GT:AD:DP:GQ:PL    1/1:0,4:4:12.01:146,12,0
21    28296324    rs151065    A    G    457.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:490,42,0
21    28302147    rs229091    C    T    354.56    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.223;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.826;QD=11.82;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    0/1:18,12:30:99:385,0,661
21    28302355    rs226794    A    G    4585.83    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.025;DB;DP=141;Dels=0.0;FS=6.357;HRun=1;HaplotypeScore=0.734;MQ=59.87;MQ0=0;MQRankSum=0.229;QD=32.52;ReadPosRankSum=-0.509;SNPEFF_AMINO_ACID_CHANGE=L692P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_28302205_28302380;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    1/1:1,140:141:99:4586,301,0
21    28307173    rs162495    C    T    493.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:526,42,0
21    28326842    rs162508    T    G    41.32    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.77;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:71,0,31
21    28326894    rs162507    C    T    33.72    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.62;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    0/1:4,2:6:63.71:64,0,145
21    28326941    rs162506    T    C    625.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:658,54,0
21    28338298    rs457947    C    G    95.92    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.568;DB;DP=23;Dels=0.0;FS=2.066;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.033;QD=4.17;ReadPosRankSum=-1.102;SNPEFF_AMINO_ACID_CHANGE=G138A;SNPEFF_CODON_CHANGE=gGt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_28337607_28338832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    0/1:16,7:23:99:126,0,581
21    28338581    rs3746840    G    T    181.58    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.271;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.898;QD=18.16;ReadPosRankSum=-0.898;SNPEFF_AMINO_ACID_CHANGE=R44S;SNPEFF_CODON_CHANGE=Cgc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_28337607_28338832;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADAMTS5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000284987    GT:AD:DP:GQ:PL    0/1:2,8:10:60.80:212,0,61
21    30250327    rs2738959    T    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
21    30250382    rs2738960    T    C    215.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
21    30250555    rs2205446    T    C    1283.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.3;SNPEFF_AMINO_ACID_CHANGE=K138R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_30250514_30250655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351429    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1317,102,0
21    30250615    rs2205447    T    C    1490.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_AMINO_ACID_CHANGE=K118R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_30250514_30250655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000351429    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1524,120,0
21    30250812    rs2205448    T    C    155.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
21    30252088    rs2205449    T    A    825.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,21:21:63.21:858,63,0
21    30254695    rs2254507    C    T    257.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:290,21,0
21    30255074    rs2243615    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    30257418    rs1997605    G    A    2074.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9789;MQ=57.15;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2107,160,0
21    30257560    rs1997606    C    G    2356.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=55.76;MQ0=0;QD=26.19;SNPEFF_AMINO_ACID_CHANGE=L36;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_30257534_30257693;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2390,184,0
21    30257568    rs1997607    T    C    2269.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.14;MQ0=0;QD=28.37;SNPEFF_AMINO_ACID_CHANGE=N34D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_30257534_30257693;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2302,178,0
21    30257729    rs2859734    A    G    338.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=N6AMT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303775    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:371,27,0
21    30315730    rs2274800    G    A    735.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:768,60,0
21    30316304    .    T    TTTAA    1729.60    PASS    AC=2;AF=1.00;AN=2;DP=23;FS=0.0;HRun=0;HaplotypeScore=311.3298;IndelType=I;MQ=35.46;MQ0=0;QD=75.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    1/1:13,10:23:66.23:1772,66,0
21    30316305    rs3053575    G    GATTTAAGAAA    2399.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=396.245;IndelType=I;MQ=34.99;MQ0=0;MQRankSum=-1.595;QD=95.96;ReadPosRankSum=1.595;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    1/1:15,10:25:66.80:2441,67,0
21    30316306    .    T    TAA    735.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DP=24;FS=0.0;HRun=0;HaplotypeScore=447.4742;IndelType=I;MQ=33.54;MQ0=0;MQRankSum=-1.589;QD=30.66;ReadPosRankSum=1.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    1/1:13,11:24:57.70:778,58,0
21    30318657    .    C    T    429.75    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=3.906;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.196;QD=14.82;ReadPosRankSum=-1.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    0/1:15,14:29:99:460,0,376
21    30324644    rs2832145    T    G    760.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:794,60,0
21    30324755    rs2832146    G    A    84.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
21    30325875    rs2243491    A    T    126.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475344    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
21    30332911    rs34635840    C    T    1218.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=30.45;SNPEFF_AMINO_ACID_CHANGE=V761I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_30332839_30333028;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    1/1:0,40:40:90.30:1251,90,0
21    30338293    rs5843357    G    GC    485.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=27.0066;IndelType=I;MQ=60.98;MQ0=0;QD=44.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483326    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:528,33,0
21    30341891    rs2254796    A    G    1737.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=L403S;SNPEFF_CODON_CHANGE=tTa/tCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_30341788_30341923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1770,132,0
21    30357307    rs2245434    C    T    191.18    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.751;QD=21.24;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LTN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361371    GT:AD:DP:GQ:PL    0/1:1,8:9:16.73:221,0,17
21    30400110    rs8133768    G    A    242.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334352    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:275,21,0
21    30408670    rs2274802    A    T    733.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_AMINO_ACID_CHANGE=Q141H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_30408592_30408695;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334352    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:767,57,0
21    30415629    rs2832157    A    G    173.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334352    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:207,18,0
21    30442475    rs2183569    T    C    296.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286788    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
21    30442481    rs2183570    C    T    376.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286788    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:410,30,0
21    30464916    rs2832170    C    T    1389.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559;DB;DP=40;Dels=0.0;FS=5.607;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.866;QD=34.75;ReadPosRankSum=-0.693;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C21orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419845    GT:AD:DP:GQ:PL    1/1:1,39:40:71.73:1423,72,0
21    30465039    rs3746845    C    T    303.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C21orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419845    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:337,24,0
21    30505909    rs73192195    G    T    158.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C21orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286791    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:192,15,0
21    30532146    rs72233195    TA    T    1031.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.0;HRun=12;HaplotypeScore=168.2154;IndelType=D;MQ=58.75;MQ0=0;QD=21.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C21orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286791    GT:AD:DP:GQ:PL    1/1:1,46:48:99:1074,140,0
21    30532437    rs2832224    G    A    3304.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6775;MQ=60.0;MQ0=0;QD=33.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C21orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286791    GT:AD:DP:GQ:PL    1/1:0,97:98:99:3305,250,0
21    30546860    rs2245023    G    T    78.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C21orf7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286791    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:110,9,0
21    30566236    rs11088112    T    A    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.99;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546469    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
21    30566667    rs117163281    C    T    390.28    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=4.392;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.14;QD=14.45;ReadPosRankSum=0.898;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546469    GT:AD:DP:GQ:PL    0/1:14,13:27:99:420,0,406
21    30660302    rs1153275    T    C    1028.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546469    GT:AD:DP:GQ:PL    1/1:0,35:35:75.25:1061,75,0
21    30714598    rs411697    G    A    450.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286800    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:484,36,0
21    30714776    rs388707    T    C    3020.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.0899;MQ=58.96;MQ0=0;QD=35.54;SNPEFF_AMINO_ACID_CHANGE=G611;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_30714720_30718469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286800    GT:AD:DP:GQ:PL    1/1:0,85:85:99:3054,232,0
21    30715275    rs425989    T    C    71.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.89;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468059    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:104,9,0
21    30830393    rs9981313    T    G    894.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468059    GT:AD:DP:GQ:PL    1/1:0,30:30:72.22:927,72,0
21    30969901    rs363431    T    C    591.40    PASS    AB=0.382;AC=1;AF=0.50;AN=2;BaseQRankSum=1.063;DB;DP=35;Dels=0.0;FS=1.671;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-1.311;QD=16.9;ReadPosRankSum=-0.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472429    GT:AD:DP:GQ:PL    0/1:13,21:35:99:621,0,377
21    30969925    .    A    G    136.12    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.032;DP=35;Dels=0.0;FS=33.103;HRun=2;HaplotypeScore=1.8824;MQ=48.52;MQ0=0;MQRankSum=-3.663;QD=3.89;ReadPosRankSum=2.029;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472429    GT:AD:DP:GQ:PL    0/1:16,19:35:99:166,0,577
21    31002803    rs7282163    G    T    939.98    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=71;Dels=0.0;FS=1.158;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=1.451;QD=13.24;ReadPosRankSum=-0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309434    GT:AD:DP:GQ:PL    0/1:36,34:71:99:970,0,1136
21    31026967    rs10637196    A    AAAAG    908.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.798;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=71.4292;IndelType=I;MQ=60.08;MQ0=0;MQRankSum=0.858;QD=43.28;ReadPosRankSum=-1.007;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309434    GT:AD:DP:GQ:PL    0/1:7,12:21:99:948,0,314
21    31233904    rs59858105    G    GT    167.52    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=91.6507;IndelType=I;MQ=41.96;MQ0=0;MQRankSum=-0.736;QD=27.92;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309434    GT:AD:DP:GQ:PL    0/1:1,5:6:20.92:207,0,21
21    31233994    rs468413    T    C    318.13    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.623;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=0.467;QD=22.72;ReadPosRankSum=-1.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000309434    GT:AD:DP:GQ:PL    0/1:3,11:14:88.29:348,0,88
21    31655212    rs1557291    A    C    1084.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=32.86;SNPEFF_AMINO_ACID_CHANGE=G13;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31653629_31655276;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP24-1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340345    GT:AD:DP:GQ:PL    1/1:0,33:33:87.28:1117,87,0
21    31709691    rs2244485    G    A    4089.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_AMINO_ACID_CHANGE=A99V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31709331_31710012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP27-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382835    GT:AD:DP:GQ:PL    1/1:0,120:120:99:4090,316,0
21    31744127    rs877346    A    T    1796.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.2;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=C135*;SNPEFF_CODON_CHANGE=tgT/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_21_31743709_31744557;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP13-2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399889    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1829,138,0
21    31768539    rs9636833    G    C    1292.97    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=4.303;DB;DP=80;Dels=0.0;FS=1.863;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.046;QD=16.16;ReadPosRankSum=-0.107;SNPEFF_AMINO_ACID_CHANGE=T45;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31768392_31769136;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP13-1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355459    GT:AD:DP:GQ:PL    0/1:37,43:80:99:1323,0,1038
21    31869286    rs2298437    T    C    2683.57    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=4.345;DB;DP=176;Dels=0.0;FS=2.144;HRun=0;HaplotypeScore=1.9968;MQ=58.41;MQ0=0;MQRankSum=2.338;QD=15.25;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=Y48C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31869142_31869451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP19-4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334058    GT:AD:DP:GQ:PL    0/1:87,89:176:99:2714,0,2434
21    31913981    rs5843453    AG    A    7239.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DB;DP=179;FS=0.0;HRun=1;HaplotypeScore=1056.4735;IndelType=D;MQ=58.97;MQ0=0;MQRankSum=-0.742;QD=40.44;ReadPosRankSum=-0.089;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_21_31913854_31914183;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP19-6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000334046    GT:AD:DP:GQ:PL    1/1:3,176:179:99:7240,479,0
21    31914000    rs1023364    T    A    5917.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DB;DP=204;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6552;MQ=58.01;MQ0=0;MQRankSum=-1.016;QD=29.01;ReadPosRankSum=-1.577;SNPEFF_AMINO_ACID_CHANGE=G51;SNPEFF_CODON_CHANGE=ggA/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31913854_31914183;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP19-6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334046    GT:AD:DP:GQ:PL    1/1:1,180:204:99:5918,425,0
21    31964916    rs9305426    A    C    737.03    PASS    AB=0.46;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.032;DB;DP=52;Dels=0.0;FS=4.661;HRun=0;HaplotypeScore=9.6881;MQ=51.94;MQ0=0;MQRankSum=2.1;QD=14.17;ReadPosRankSum=0.565;SNPEFF_AMINO_ACID_CHANGE=Y44S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31964759_31965394;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP6-3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391624    GT:AD:DP:GQ:PL    0/1:23,27:52:99:767,0,635
21    31973516    rs198915    T    A    1488.82    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.343;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7971;MQ=60.0;MQ0=0;MQRankSum=0.234;QD=14.05;ReadPosRankSum=-0.625;SNPEFF_AMINO_ACID_CHANGE=L26H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31973414_31973612;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP22-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334680    GT:AD:DP:GQ:PL    0/1:54,52:106:99:1519,0,1750
21    31973685    rs1961491    C    T    352.23    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8561;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=14.09;ReadPosRankSum=3.617;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP22-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334680    GT:AD:DP:GQ:PL    0/1:12,13:25:99:382,0,400
21    31986097    rs74914596    G    A    1085.85    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=2.597;DB;DP=112;Dels=0.0;FS=0.812;HRun=0;HaplotypeScore=3.293;MQ=56.84;MQ0=0;MQRankSum=-0.16;QD=9.7;ReadPosRankSum=0.103;SNPEFF_AMINO_ACID_CHANGE=R29C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31986074_31986154;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP6-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399871    GT:AD:DP:GQ:PL    0/1:59,53:112:99:1116,0,1145
21    31992864    rs1702405    A    G    161.55    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.808;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.453;QD=8.98;ReadPosRankSum=-1.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP20-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334664    GT:AD:DP:GQ:PL    0/1:7,11:18:99:192,0,242
21    31993073    rs146751633    T    G    136.39    FSFilter60    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.538;DB;DP=59;Dels=0.0;FS=74.632;HRun=2;HaplotypeScore=3.1341;MQ=52.07;MQ0=0;MQRankSum=-4.806;QD=2.31;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=C33G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_31992946_31993169;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP20-4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382828    GT:AD:DP:GQ:PL    0/1:35,24:59:99:166,0,1188
21    32185088    rs2833101    G    A    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP8-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329621    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
21    32185105    rs1892667    T    G    37.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP8-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329621    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
21    32253513    rs9636845    A    T    656.11    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=41;Dels=0.0;FS=9.551;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.369;QD=16.0;ReadPosRankSum=-1.03;SNPEFF_AMINO_ACID_CHANGE=C111S;SNPEFF_CODON_CHANGE=Tgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_32252966_32253874;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP11-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332378    GT:AD:DP:GQ:PL    0/1:20,21:41:99:686,0,659
21    32435137    rs2833247    A    C    2727.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=52.69;MQ0=4;QD=33.27;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,80:82:99:2761,208,0
21    32435334    rs11088156    T    C    1758.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1792,150,0
21    32435347    rs10854337    A    G    1523.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.63;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1557,123,0
21    32435489    rs10775644    G    A    334.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=30.37;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:367,27,0
21    32493031    rs762194    A    G    682.62    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=0.652;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-0.509;QD=10.19;ReadPosRankSum=1.056;SNPEFF_AMINO_ACID_CHANGE=G1417;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_32492675_32493155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541036    GT:AD:DP:GQ:PL    0/1:40,27:67:99:713,0,1067
21    32499577    rs2833286    A    G    148.11    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=16.46;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:4,5:9:99:178,0,131
21    32502293    rs2070412    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    32502411    rs112890688    AG    A    455.30    PASS    AB=0.911;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.825;DB;DP=51;FS=0.0;HRun=3;HaplotypeScore=649.1273;IndelType=D;MQ=44.26;MQ0=0;MQRankSum=-1.233;QD=8.93;ReadPosRankSum=1.233;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:46,5:51:99:494,0,825
21    32502414    rs41389646    G    A    229.23    HaplotypeScoreFilter13    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.199;DB;DP=55;Dels=0.0;FS=0.0;HRun=16;HaplotypeScore=16.5593;MQ=45.29;MQ0=0;MQRankSum=-2.003;QD=4.17;ReadPosRankSum=0.866;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:35,20:55:99:259,0,872
21    32502764    rs56339310    T    C    132.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.627;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=1.2;QD=9.47;ReadPosRankSum=-0.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:7,7:14:99:163,0,242
21    32513323    rs2833301    A    G    68.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.68;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=58.33;MQ0=0;MQRankSum=-0.271;QD=4.89;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:8,6:14:98.44:98,0,290
21    32524852    rs9305453    A    G    285.40    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.367;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.151;QD=16.79;ReadPosRankSum=0.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:6,11:17:99:315,0,186
21    32525302    rs723470    A    C    903.42    PASS    AB=0.482;AC=1;AF=0.50;AN=2;BaseQRankSum=3.755;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.344;QD=16.13;ReadPosRankSum=-1.033;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:27,29:56:99:933,0,898
21    32525345    rs723469    G    A    1562.47    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=4.932;DB;DP=105;Dels=0.0;FS=0.809;HRun=0;HaplotypeScore=0.8941;MQ=59.78;MQ0=0;MQRankSum=-0.888;QD=14.88;ReadPosRankSum=2.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:52,53:105:99:1592,0,1282
21    32526525    rs12482307    C    T    186.35    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.141;QD=14.33;ReadPosRankSum=0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:5,8:13:99:216,0,167
21    32575405    rs2833335    C    T    383.65    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=2.204;DB;DP=22;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.668;QD=17.44;ReadPosRankSum=-0.668;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:9,13:22:99:414,0,271
21    32582204    rs7282059    C    T    93.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469412    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
21    32585809    rs2244187    C    T    557.55    PASS    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=33;Dels=0.0;FS=2.039;HRun=0;HaplotypeScore=3.1438;MQ=59.3;MQ0=0;MQRankSum=-0.534;QD=16.9;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:13,20:33:99:588,0,402
21    32597845    rs2070415    G    A    131.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
21    32597972    rs71318261    C    CA    110.62    PASS    AB=0.766;AC=1;AF=0.50;AN=2;BaseQRankSum=1.569;DB;DP=36;FS=0.0;HRun=15;HaplotypeScore=273.235;IndelType=I;MQ=54.28;MQ0=0;MQRankSum=-1.157;QD=3.07;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:22,11:36:99:150,0,199
21    32598003    rs2070416    A    T    362.58    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.091;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.6737;MQ=55.58;MQ0=0;MQRankSum=0.272;QD=6.71;ReadPosRankSum=-0.712;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:32,22:54:99:393,0,748
21    32638549    rs2070417    C    A    248.23    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.011;DB;DP=72;Dels=0.0;FS=3.448;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.686;QD=3.45;ReadPosRankSum=0.201;SNPEFF_AMINO_ACID_CHANGE=G247V;SNPEFF_CODON_CHANGE=gGg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_32638326_32639299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:47,25:72:99:278,0,1508
21    32638550    rs2070418    C    T    267.36    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=2.005;DB;DP=73;Dels=0.0;FS=4.94;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.238;QD=3.66;ReadPosRankSum=0.32;SNPEFF_AMINO_ACID_CHANGE=G247R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_32638326_32639299;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIAM1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000286827    GT:AD:DP:GQ:PL    0/1:48,25:73:99:297,0,1402
21    33073985    rs204734    T    C    249.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCAF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286835    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
21    33297165    rs13050585    C    A    208.89    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.372;QD=13.93;ReadPosRankSum=0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270112    GT:AD:DP:GQ:PL    0/1:8,7:15:99:239,0,238
21    33340401    rs2275970    T    A    69.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.91;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270112    GT:AD:DP:GQ:PL    0/1:2,3:5:67.41:100,0,67
21    33355760    rs737103    G    A    341.77    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=0.092;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.277;QD=14.86;ReadPosRankSum=-0.585;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270112    GT:AD:DP:GQ:PL    0/1:12,11:23:99:372,0,412
21    33368188    rs2070371    T    C    697.70    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=1.548;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.929;QD=14.54;ReadPosRankSum=-1.486;SNPEFF_AMINO_ACID_CHANGE=L471;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_33368081_33368261;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUNK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270112    GT:AD:DP:GQ:PL    0/1:23,25:48:99:728,0,767
21    33370900    rs9305483    T    C    1040.51    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.981;DB;DP=77;Dels=0.0;FS=0.88;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.705;QD=13.51;ReadPosRankSum=-1.384;SNPEFF_AMINO_ACID_CHANGE=S516;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_33370839_33376377;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUNK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000270112    GT:AD:DP:GQ:PL    0/1:39,36:77:99:1071,0,999
21    33371540    rs2070372    T    G    558.40    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=40;Dels=0.0;FS=2.168;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.573;QD=13.96;ReadPosRankSum=0.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465574    GT:AD:DP:GQ:PL    0/1:21,19:40:99:588,0,675
21    33371655    rs2070373    G    A    142.27    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=17.78;ReadPosRankSum=-1.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465574    GT:AD:DP:GQ:PL    0/1:3,5:8:96.19:172,0,96
21    33371733    .    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUNK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465574    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
21    33464643    rs2833649    T    C    786.26    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.963;DB;DP=56;Dels=0.0;FS=2.369;HRun=1;HaplotypeScore=0.8667;MQ=57.91;MQ0=0;MQRankSum=0.452;QD=14.04;ReadPosRankSum=1.093;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AP000263.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390207    GT:AD:DP:GQ:PL    0/1:30,26:56:99:816,0,909
21    33690293    rs2070380    C    A    371.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339944    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:405,30,0
21    33691754    rs958828    G    A    161.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MRAP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339944    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:194,15,0
21    33694224    rs3761342    C    G    1493.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=28.72;SNPEFF_AMINO_ACID_CHANGE=V1791L;SNPEFF_CODON_CHANGE=Gtt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_33694111_33694254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1527,114,0
21    33719695    rs2070378    C    T    339.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=K1146;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_33719265_33720120;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:373,30,0
21    33721843    rs743306    T    C    32.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
21    33726201    rs2298363    C    T    459.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:492,36,0
21    33726598    rs118151780    T    C    161.19    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=17.91;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    0/1:2,7:9:61.23:191,0,61
21    33730013    rs7283283    T    C    1528.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1561,114,0
21    33730128    rs6517095    C    G    122.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
21    33733468    .    A    AG    139.76    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=3.307;DP=32;FS=2.56;HRun=0;HaplotypeScore=142.0179;IndelType=I;MQ=52.09;MQ0=0;MQRankSum=-0.024;QD=4.37;ReadPosRankSum=0.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    0/1:25,6:32:99:179,0,953
21    33740637    rs7276783    G    A    656.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:1,18:19:51.17:689,51,0
21    33746113    rs117415725    A    C    448.21    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=2.36;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.083;QD=12.81;ReadPosRankSum=0.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    0/1:17,18:35:99:478,0,551
21    33749533    rs4816431    A    C    2085.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;QD=33.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2118,157,0
21    33750511    rs2833793    G    A    118.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=URB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382751    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:151,12,0
21    33785343    rs76961987    G    A    129.22    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=1.031;QD=11.75;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C21orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300255    GT:AD:DP:GQ:PL    0/1:6,5:11:99:159,0,204
21    33840095    rs8130653    C    T    593.85    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.376;DB;DP=33;Dels=0.0;FS=3.673;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.141;QD=18.0;ReadPosRankSum=-0.281;SNPEFF_AMINO_ACID_CHANGE=Y191;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_33840004_33840156;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C21orf63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300255    GT:AD:DP:GQ:PL    0/1:12,21:33:99:624,0,364
21    33840208    rs4816434    A    G    30.21    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.04;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C21orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300255    GT:AD:DP:GQ:PL    0/1:3,2:5:60.19:60,0,67
21    33867280    rs2096458    A    G    404.65    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=1.727;DB;DP=31;Dels=0.0;FS=8.287;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.655;QD=13.05;ReadPosRankSum=-0.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C21orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300255    GT:AD:DP:GQ:PL    0/1:17,14:31:99:435,0,556
21    33886986    rs2833863    T    C    61.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C21orf63;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300255    GT:AD:DP:GQ:PL    1/1:0,3:3:9:94,9,0
21    33887131    rs3177478    G    A    702.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=57.97;MQ0=0;QD=30.54;SNPEFF_AMINO_ACID_CHANGE=P271;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_33887124_33887707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C21orf63;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401402    GT:AD:DP:GQ:PL    1/1:0,23:23:54.17:735,54,0
21    33947729    rs59453134    T    C    34.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553001    GT:AD:DP:GQ:PL    1/1:0,2:2:6:66,6,0
21    33949059    rs7520    G    A    1759.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553001    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1792,138,0
21    33949306    rs1015048    T    C    706.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553001    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:739,57,0
21    33949423    rs1015047    T    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553001    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
21    33951068    rs9622    T    C    3648.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.4;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=H145R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_33951004_33951141;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP10L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300258    GT:AD:DP:GQ:PL    1/1:0,115:116:99:3648,289,0
21    33954885    rs71971113    T    TTCTG    474.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=19.0594;IndelType=I;MQ=58.12;MQ0=0;QD=67.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553001    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:517,21,0
21    33956362    rs2833916    T    C    1344.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553001    GT:AD:DP:GQ:PL    1/1:0,43:44:99:1377,105,0
21    33956579    rs2017816    T    C    1170.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.55;SNPEFF_AMINO_ACID_CHANGE=K12;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_33956471_33956615;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCP10L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300258    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1204,99,0
21    33975279    rs2833926    T    C    337    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458138    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:370,27,0
21    33979904    rs79575898    C    CA    78.74    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.821;DB;DP=30;FS=0.0;HRun=17;HaplotypeScore=236.4456;IndelType=I;MQ=55.6;MQ0=0;MQRankSum=-0.198;QD=2.62;ReadPosRankSum=0.594;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf59;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290155    GT:AD:DP:GQ:PL    0/1:17,7:30:99:118,0,138
21    33997466    rs701730    A    G    217.32    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.536;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=58.95;MQ0=0;MQRankSum=0.534;QD=9.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357345    GT:AD:DP:GQ:PL    0/1:13,9:22:99:247,0,373
21    34003928    rs71640263    A    AAGTATT    1566.53    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.848;DB;DP=35;FS=1.373;HRun=0;HaplotypeScore=177.7362;IndelType=I;MQ=51.07;MQ0=0;MQRankSum=-2.847;QD=44.76;ReadPosRankSum=-0.121;SNPEFF_AMINO_ACID_CHANGE=V1319VIL;SNPEFF_CODON_CHANGE=gtt/gtAATACTt;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_INSERTION;SNPEFF_EXON_ID=exon_21_34001069_34004111;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382491    GT:AD:DP:GQ:PL    0/1:20,13:35:99:1606,0,1211
21    34014192    rs11702774    G    A    143.31    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=11.94;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322229    GT:AD:DP:GQ:PL    0/1:7,5:12:99:173,0,184
21    34014283    rs2833929    C    A    474.13    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.082;DB;DP=39;Dels=0.0;FS=1.307;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.402;QD=12.16;ReadPosRankSum=0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322229    GT:AD:DP:GQ:PL    0/1:22,17:39:99:504,0,634
21    34018437    rs844978    C    T    148.84    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.881;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=16.54;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467445    GT:AD:DP:GQ:PL    0/1:4,5:9:99:179,0,124
21    34038113    rs701734    T    A    111.25    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.89;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429236    GT:AD:DP:GQ:PL    0/1:3,4:7:99:141,0,105
21    34050939    .    TA    T    602.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=5.324;DP=39;FS=1.243;HRun=4;HaplotypeScore=184.2241;IndelType=D;MQ=58.84;MQ0=0;MQRankSum=0.436;QD=15.06;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322229    GT:AD:DP:GQ:PL    0/1:20,20:39:99:641,0,795
21    34050941    rs150500694    TA    T    504.02    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=5.396;DB;DP=40;FS=1.183;HRun=3;HaplotypeScore=195.9026;IndelType=D;MQ=58.87;MQ0=0;MQRankSum=-1.15;QD=12.29;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322229    GT:AD:DP:GQ:PL    0/1:21,20:40:99:543,0,734
21    34059207    rs844975    C    T    92.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.74;ReadPosRankSum=-1.835;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322229    GT:AD:DP:GQ:PL    0/1:8,4:12:99:123,0,295
21    34059352    rs2254562    T    C    859.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.093;DB;DP=56;Dels=0.0;FS=10.5;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.177;QD=15.34;ReadPosRankSum=0.244;SNPEFF_AMINO_ACID_CHANGE=K295R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34059288_34059384;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000322229    GT:AD:DP:GQ:PL    0/1:28,28:56:99:889,0,817
21    34074505    rs74625247    T    G    136.18    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=19.45;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNJ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322229    GT:AD:DP:GQ:PL    0/1:2,5:7:61.94:166,0,62
21    34116905    rs715231    C    T    138.67    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.307;QD=15.41;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421049    GT:AD:DP:GQ:PL    0/1:4,5:9:99:169,0,130
21    34117067    rs78287607    GA    G    113.05    QDFilter2    AB=0.864;AC=1;AF=0.50;AN=2;BaseQRankSum=2.996;DB;DP=159;FS=4.557;HRun=12;HaplotypeScore=552.9654;IndelType=D;MQ=58.9;MQ0=0;MQRankSum=-1.344;QD=0.71;ReadPosRankSum=1.234;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421049    GT:AD:DP:GQ:PL    0/1:131,25:159:99:152,0,2907
21    34128717    rs7279405    G    A    1282.66    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.713;DB;DP=118;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.61;MQ0=0;MQRankSum=-0.295;QD=10.87;ReadPosRankSum=-0.834;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464256    GT:AD:DP:GQ:PL    0/1:73,45:118:99:1313,0,2218
21    34133213    rs28413713    C    T    44.30    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.53;MQ0=0;MQRankSum=-0.55;QD=6.33;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290178    GT:AD:DP:GQ:PL    0/1:4,3:7:74.29:74,0,127
21    34133254    rs8133519    G    T    265.63    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.429;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;MQRankSum=-1.184;QD=13.98;ReadPosRankSum=-0.939;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290178    GT:AD:DP:GQ:PL    0/1:9,10:19:99:296,0,307
21    34157235    rs112619133    GT    G    851.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=12;HaplotypeScore=166.6126;IndelType=D;MQ=58.87;MQ0=0;QD=16.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382375    GT:AD:DP:GQ:PL    1/1:10,40:52:99:893,118,0
21    34157347    rs7281662    T    C    152.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382375    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:185,15,0
21    34165864    rs2231391    C    A    148.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=24.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf62;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382373    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:181,15,0
21    34166190    rs74617086    A    T    1306.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_AMINO_ACID_CHANGE=F181L;SNPEFF_CODON_CHANGE=ttT/ttA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34166032_34166796;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf62;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479548    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1340,108,0
21    34166343    rs2231390    C    T    952.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.01;SNPEFF_AMINO_ACID_CHANGE=E130;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34166032_34166796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf62;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000479548    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:985,75,0
21    34169181    rs762228    A    G    131.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382375    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:164,12,0
21    34169317    rs5843567    C    CT    1974.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=91.7706;IndelType=I;MQ=59.44;MQ0=0;QD=44.87;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_21_34169249_34171279;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf49;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000382375    GT:AD:DP:GQ:PL    1/1:2,42:44:99:2016,126,0
21    34182722    rs8129488    T    C    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf49;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453404    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
21    34399401    rs762178    A    G    306.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=27.88;SNPEFF_AMINO_ACID_CHANGE=S77;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34398243_34401504;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OLIG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333337    GT:AD:DP:GQ:PL    1/1:0,11:11:30.04:340,30,0
21    34538065    rs11444667    C    CT    848.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=2;HaplotypeScore=47.2161;IndelType=I;MQ=59.42;MQ0=0;QD=40.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440586    GT:AD:DP:GQ:PL    1/1:0,21:21:63.20:890,63,0
21    34540594    rs11379155    C    CT    396.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=21.2974;IndelType=I;MQ=61.07;MQ0=0;QD=39.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440586    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:439,30,0
21    34616157    rs2834156    T    C    98.63    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.474;QD=5.8;ReadPosRankSum=-1.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNAR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342101    GT:AD:DP:GQ:PL    0/1:12,5:17:99:129,0,438
21    34617213    rs2834158    T    C    1831.04    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.052;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=59.6;MQ0=0;MQRankSum=1.052;QD=32.12;ReadPosRankSum=-1.485;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNAR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342101    GT:AD:DP:GQ:PL    1/1:1,56:57:99:1864,102,0
21    34624917    rs2236757    A    G    711.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNAR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447980    GT:AD:DP:GQ:PL    1/1:0,22:22:54.17:744,54,0
21    34648808    rs2849997    C    T    161.39    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.755;DB;DP=19;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=2.2413;MQ=60.0;MQ0=0;MQRankSum=-1.511;QD=8.49;ReadPosRankSum=-0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290200    GT:AD:DP:GQ:PL    0/1:10,9:19:99:191,0,371
21    34649123    rs2285020    G    A    488.72    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.57;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.38;MQ0=0;MQRankSum=0.472;QD=13.21;ReadPosRankSum=0.076;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL10RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290200    GT:AD:DP:GQ:PL    0/1:20,17:37:99:519,0,692
21    34725807    rs914142    G    A    158.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270139    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:191,15,0
21    34726127    rs2856973    T    A    2015.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFNAR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270139    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2048,150,0
21    34799084    .    C    CTA    631.96    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=0;HaplotypeScore=29.7104;IndelType=I;MQ=61.53;MQ0=0;QD=45.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IFNGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290219    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:674,42,0
21    34799350    rs11910627    C    G    6061.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7968;MQ=59.87;MQ0=0;QD=33.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IFNGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290219    GT:AD:DP:GQ:PL    1/1:0,180:181:99:6062,442,0
21    34804966    rs1532    T    C    1218.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;QD=38.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IFNGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439213    GT:AD:DP:GQ:PL    1/1:0,32:32:93.30:1252,93,0
21    34809043    rs5843604    T    TA    503.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=5;HaplotypeScore=125.3732;IndelType=I;MQ=55.52;MQ0=0;QD=31.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IFNGR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439213    GT:AD:DP:GQ:PL    1/1:4,12:16:45.61:546,46,0
21    34822933    rs2834219    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IFNGR2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
21    34823252    rs2834220    C    T    402.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IFNGR2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:436,33,0
21    34837623    rs2248820    C    A    1170.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.59;MQ0=0;QD=35.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM50B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432504    GT:AD:DP:GQ:PL    1/1:0,33:33:90.29:1204,90,0
21    34871133    rs7278879    C    T    130.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.72;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GART;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414353    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:163,12,0
21    34878453    rs147818614    T    A    276.77    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.493;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7933;MQ=59.17;MQ0=0;MQRankSum=1.693;QD=9.88;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GART;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487155    GT:AD:DP:GQ:PL    0/1:14,13:28:99:307,0,365
21    34894623    rs2834234    T    C    1127.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GART;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361093    GT:AD:DP:GQ:PL    1/1:0,33:33:87.26:1161,87,0
21    34897113    rs8788    C    T    2717.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=V421I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34896316_34897307;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GART;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361093    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2751,202,0
21    34900924    rs71322226    G    GA    559.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;DB;DP=38;FS=3.984;HRun=14;HaplotypeScore=261.6482;IndelType=I;MQ=54.95;MQ0=0;MQRankSum=-0.407;QD=14.73;ReadPosRankSum=-1.346;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GART;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426819    GT:AD:DP:GQ:PL    1/1:28,9:38:37:602,37,0
21    34907636    .    GA    G    190.55    QDFilter2    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.185;DP=96;FS=3.969;HRun=17;HaplotypeScore=546.1496;IndelType=D;MQ=56.8;MQ0=0;MQRankSum=2.539;QD=1.98;ReadPosRankSum=1.975;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GART;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361093    GT:AD:DP:GQ:PL    0/1:70,18:96:99:230,0,536
21    34925142    rs13433428    C    T    4038.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;QD=33.1;SNPEFF_AMINO_ACID_CHANGE=S1202L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34921782_34927697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SON;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290239    GT:AD:DP:GQ:PL    1/1:0,122:122:99:4038,304,0
21    34925627    rs140276173    G    A    171.79    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=27;Dels=0.0;FS=12.923;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.361;QD=6.36;ReadPosRankSum=-0.417;SNPEFF_AMINO_ACID_CHANGE=A1364T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34921782_34927697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SON;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290239    GT:AD:DP:GQ:PL    0/1:19,8:27:99:202,0,607
21    34925659    rs148012048    T    C    118.77    PASS    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.199;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.9555;MQ=59.36;MQ0=0;MQRankSum=0.04;QD=3.3;ReadPosRankSum=-2.958;SNPEFF_AMINO_ACID_CHANGE=T1374;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34921782_34927697;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SON;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290239    GT:AD:DP:GQ:PL    0/1:29,7:36:99:149,0,933
21    34926260    rs13047599    C    T    1935.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_AMINO_ACID_CHANGE=R1575C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34921782_34927697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SON;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290239    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1969,150,0
21    34927047    .    G    A    920.95    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=1.358;DP=74;Dels=0.0;FS=1.949;HRun=0;HaplotypeScore=1.9157;MQ=60.0;MQ0=0;MQRankSum=-0.172;QD=12.45;ReadPosRankSum=-0.593;SNPEFF_AMINO_ACID_CHANGE=R1837H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34921782_34927697;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SON;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290239    GT:AD:DP:GQ:PL    0/1:40,34:74:99:951,0,1153
21    34948531    rs35548007    C    CT    276.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=29.3379;IndelType=I;MQ=45.27;MQ0=0;QD=30.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DONSON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303071    GT:AD:DP:GQ:PL    1/1:2,7:9:21.07:319,21,0
21    34948684    rs34377180    G    GA    3361.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.0;HRun=1;HaplotypeScore=455.3386;IndelType=I;MQ=35.78;MQ0=0;QD=41.5;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_21_34948671_34949787;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SON;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000356577    GT:AD:DP:GQ:PL    1/1:12,69:78:99:3362,226,0
21    34948696    rs34373121    GA    G    3044.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.0;HRun=1;HaplotypeScore=469.3124;IndelType=D;MQ=37.14;MQ0=0;QD=38.54;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_21_34948671_34949787;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SON;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000356577    GT:AD:DP:GQ:PL    1/1:6,73:77:99:3087,223,0
21    34952008    rs2834238    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DONSON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462566    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
21    34954602    rs79908158    AG    A    620.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=2;HaplotypeScore=44.9249;IndelType=D;MQ=60.6;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SON;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290239    GT:AD:DP:GQ:PL    1/1:1,17:18:51.17:663,51,0
21    34959776    rs7283856    G    A    872.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290244    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:905,72,0
21    34968503    rs2834240    A    G    1324.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.53;SNPEFF_AMINO_ACID_CHANGE=H91;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_34968368_34968519;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYZL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000414079    GT:AD:DP:GQ:PL    1/1:0,41:42:99:1357,102,0
21    34971300    rs147207829    C    T    37.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.44;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417979    GT:AD:DP:GQ:PL    0/1:2,2:4:67.77:68,0,71
21    34988745    rs6517184    T    C    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYZL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290244    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
21    35107734    rs3827181    C    T    528.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=27.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444491    GT:AD:DP:GQ:PL    1/1:0,18:19:42.13:561,42,0
21    35124253    rs2834255    A    G    1122.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379960    GT:AD:DP:GQ:PL    1/1:0,30:30:84.28:1156,84,0
21    35127735    rs2154434    C    A    574.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379960    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:607,45,0
21    35134084    rs11463632    G    GC    420.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=3;HaplotypeScore=26.6587;IndelType=I;MQ=61.64;MQ0=0;QD=32.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379960    GT:AD:DP:GQ:PL    1/1:2,11:13:33.11:462,33,0
21    35138326    rs2248815    A    G    920.87    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.494;QD=31.75;ReadPosRankSum=-1.494;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379960    GT:AD:DP:GQ:PL    1/1:1,28:29:34.02:954,34,0
21    35174897    rs11390596    T    TA    360.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=15;FS=0.0;HRun=9;HaplotypeScore=44.4257;IndelType=I;MQ=58.45;MQ0=0;MQRankSum=1.488;QD=24.03;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379960    GT:AD:DP:GQ:PL    1/1:3,12:15:16.09:402,16,0
21    35201947    rs1108000    C    T    1672.03    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=1.86;DB;DP=129;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.84;MQ=59.68;MQ0=0;MQRankSum=1.123;QD=12.96;ReadPosRankSum=-0.649;SNPEFF_AMINO_ACID_CHANGE=A1007;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_35201928_35202049;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399349    GT:AD:DP:GQ:PL    0/1:64,65:129:99:1702,0,1795
21    35228953    rs9305535    A    G    228.87    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.109;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.774;QD=10.9;ReadPosRankSum=0.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381285    GT:AD:DP:GQ:PL    0/1:13,8:21:99:259,0,435
21    35237349    rs9984732    A    G    142.28    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.676;QD=14.23;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381285    GT:AD:DP:GQ:PL    0/1:5,5:10:99:172,0,175
21    35237608    rs9976801    T    C    115.05    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.333;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.667;QD=8.22;ReadPosRankSum=-0.533;SNPEFF_AMINO_ACID_CHANGE=D1277;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_35237455_35237638;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381288    GT:AD:DP:GQ:PL    0/1:9,5:14:99:145,0,290
21    35275955    rs9980730    G    A    3271.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.9452;MQ=59.74;MQ0=0;QD=36.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITSN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381318    GT:AD:DP:GQ:PL    1/1:0,89:90:99:3272,244,0
21    35284683    rs78234759    A    G    1521.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=36.24;SNPEFF_AMINO_ACID_CHANGE=G36;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_35284593_35284703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ATP5O;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290299    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1555,111,0
21    35370236    rs2409506    C    T    235.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:269,21,0
21    35446136    rs79607614    C    G    150.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399312    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:183,15,0
21    35467372    rs66526548    AC    A    478.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=3;HaplotypeScore=35.4721;IndelType=D;MQ=60.0;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399312    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:521,42,0
21    35467472    rs11295803    AG    A    3298.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.0;HRun=2;HaplotypeScore=213.609;IndelType=D;MQ=60.98;MQ0=0;QD=41.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399312    GT:AD:DP:GQ:PL    1/1:1,79:80:99:3299,238,0
21    35467645    rs8129891    A    G    2471.09    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.76;MQ0=0;MQRankSum=0.182;QD=31.68;ReadPosRankSum=0.593;SNPEFF_AMINO_ACID_CHANGE=T50A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_35467162_35478559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381151    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2504,159,0
21    35469193    rs4817617    C    A    3292.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9159;MQ=59.77;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=Q566K;SNPEFF_CODON_CHANGE=Caa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_35467162_35478559;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381151    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3293,259,0
21    35469708    rs77759290    G    GA    550.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=6;HaplotypeScore=80.699;IndelType=I;MQ=43.42;MQ0=0;QD=28.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399312    GT:AD:DP:GQ:PL    1/1:3,16:19:48.15:592,48,0
21    35469726    rs76714557    G    GT    632.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=1;HaplotypeScore=66.8347;IndelType=I;MQ=32.56;MQ0=0;QD=42.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399312    GT:AD:DP:GQ:PL    1/1:1,14:15:45.15:674,45,0
21    35469852    rs4817618    C    A    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MRPS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399312    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
21    35774233    rs9979709    A    G    114.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=22.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM165B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489469    GT:AD:DP:GQ:PL    1/1:0,5:5:15.01:147,15,0
21    35774234    rs7279548    T    C    115.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=23.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM165B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489469    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:148,15,0
21    35774246    rs9979810    C    T    54.16    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=-0.633;QD=5.42;ReadPosRankSum=1.866;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM165B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489469    GT:AD:DP:GQ:PL    0/1:6,4:10:84.15:84,0,211
21    35821419    rs2070357    T    C    321.30    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.501;DB;DP=20;Dels=0.0;FS=3.979;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.424;QD=16.06;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399284    GT:AD:DP:GQ:PL    0/1:8,12:20:99:351,0,279
21    35821821    rs17846179    T    C    344.83    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.341;DB;DP=28;Dels=0.0;FS=11.634;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.491;QD=12.32;ReadPosRankSum=-0.192;SNPEFF_AMINO_ACID_CHANGE=S38G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_35818989_35821982;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337385    GT:AD:DP:GQ:PL    0/1:11,17:28:99:375,0,350
21    35893737    rs8131131    T    C    100.24    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.437;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.67;QD=7.71;ReadPosRankSum=-0.696;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RCAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463276    GT:AD:DP:GQ:PL    0/1:8,5:13:99:130,0,219
21    35896082    rs5843666    C    CT    89.37    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DB;DP=21;FS=0.0;HRun=12;HaplotypeScore=81.7475;IndelType=I;MQ=58.89;MQ0=0;MQRankSum=-1.681;QD=4.26;ReadPosRankSum=-0.705;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RCAN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313806    GT:AD:DP:GQ:PL    0/1:13,7:21:99:128,0,156
21    36041978    rs7280973    A    G    53.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_AMINO_ACID_CHANGE=Q97;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_36041688_36043061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349499    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
21    36042203    rs9680380    G    C    110.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.51;SNPEFF_AMINO_ACID_CHANGE=A172;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_36041688_36043061;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349499    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
21    36079978    rs6517252    A    T    45.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=15.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349499    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:75,0,32
21    36080204    rs6517253    A    G    1138.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349499    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1172,99,0
21    36080290    rs6517254    C    T    2269.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.01;FS=0.0;HRun=3;HaplotypeScore=2.8184;MQ=59.67;MQ0=0;QD=32.89;SNPEFF_AMINO_ACID_CHANGE=F511;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_36080242_36080367;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349499    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2303,175,0
21    36080908    rs2834597    G    A    120.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLIC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349499    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
21    36164405    rs13051066    G    T    57.71    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=11.54;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399245    GT:AD:DP:GQ:PL    0/1:1,4:5:24.10:88,0,24
21    36193871    rs2018329    T    C    140.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300305    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:173,12,0
21    36206932    rs11702841    G    A    788.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9953;MQ=57.54;MQ0=0;QD=31.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300305    GT:AD:DP:GQ:PL    1/1:0,25:25:66.19:821,66,0
21    36259324    rs111527738    A    G    95.60    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=9.56;ReadPosRankSum=0.365;SNPEFF_AMINO_ACID_CHANGE=L29S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_36259140_36260987;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344691    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,174
21    36421036    rs8133634    T    C    955.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300305    GT:AD:DP:GQ:PL    1/1:1,27:28:75.23:989,75,0
21    36421331    rs56045941    T    C    221.28    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=58.78;MQ0=0;MQRankSum=-0.044;QD=11.65;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399245    GT:AD:DP:GQ:PL    0/1:9,10:19:99:251,0,248
21    36422282    rs71324342    AACAC    A    475.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.0;HRun=0;HaplotypeScore=289.6347;IndelType=D;MQ=50.94;MQ0=0;QD=9.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475045    GT:AD:DP:GQ:PL    1/1:33,11:51:43.33:518,43,0
21    36422478    rs2071029    C    T    955.02    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=3.104;DB;DP=60;Dels=0.0;FS=7.574;HRun=1;HaplotypeScore=1.2434;MQ=59.23;MQ0=0;MQRankSum=-0.748;QD=15.92;ReadPosRankSum=-0.185;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475045    GT:AD:DP:GQ:PL    0/1:28,32:60:99:985,0,851
21    37092980    rs9981293    G    A    654.78    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=3.878;DB;DP=37;Dels=0.0;FS=1.448;HRun=0;HaplotypeScore=0.5784;MQ=59.38;MQ0=0;MQRankSum=-1.242;QD=17.7;ReadPosRankSum=0.567;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RUNX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475045    GT:AD:DP:GQ:PL    0/1:16,21:37:99:685,0,439
21    37408608    rs68024241    AACGT    A    652.79    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=30;FS=0.0;HRun=0;HaplotypeScore=154.5963;IndelType=D;MQ=53.47;MQ0=0;MQRankSum=-1.962;QD=21.76;ReadPosRankSum=-0.673;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332131    GT:AD:DP:GQ:PL    0/1:17,13:30:99:692,0,707
21    37410477    rs2835239    T    C    730.08    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.755;DB;DP=63;Dels=0.0;FS=0.976;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.122;QD=11.59;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=I363V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_37410448_37410571;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399212    GT:AD:DP:GQ:PL    0/1:33,30:63:99:760,0,1117
21    37410633    rs2835240    T    C    576.71    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.019;DB;DP=50;Dels=0.0;FS=1.414;HRun=0;HaplotypeScore=1.5741;MQ=60.0;MQ0=0;MQRankSum=0.16;QD=11.53;ReadPosRankSum=0.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332131    GT:AD:DP:GQ:PL    0/1:31,19:50:99:607,0,998
21    37414256    rs71330635    T    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399201    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
21    37422966    rs2018721    C    T    580.20    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.022;DB;DP=49;Dels=0.0;FS=13.738;HRun=0;HaplotypeScore=1.8907;MQ=59.15;MQ0=0;MQRankSum=0.103;QD=11.84;ReadPosRankSum=-0.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443703    GT:AD:DP:GQ:PL    0/1:26,23:49:99:610,0,715
21    37425955    rs762360    C    T    471.15    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=0.48;DB;DP=35;Dels=0.0;FS=1.693;HRun=0;HaplotypeScore=1.6553;MQ=58.67;MQ0=0;MQRankSum=-0.248;QD=13.46;ReadPosRankSum=0.646;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332131    GT:AD:DP:GQ:PL    0/1:19,16:35:99:501,0,546
21    37425971    rs762361    C    T    436.71    PASS    AB=0.448;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.57;MQ0=0;MQRankSum=-0.461;QD=15.06;ReadPosRankSum=-2.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332131    GT:AD:DP:GQ:PL    0/1:13,16:29:99:467,0,393
21    37431265    rs2051395    G    T    807.91    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.162;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-0.146;QD=19.71;ReadPosRankSum=-0.622;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SETD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332131    GT:AD:DP:GQ:PL    0/1:17,24:41:99:838,0,583
21    37443169    .    T    TTG    104.98    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=33.8459;IndelType=I;MQ=46.87;MQ0=0;QD=21.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CBR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290349    GT:AD:DP:GQ:PL    1/1:0,5:5:15:147,15,0
21    37443480    rs1005696    T    G    70.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.13;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=F174L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_37443248_37443881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CBR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000439427    GT:AD:DP:GQ:PL    0/1:2,3:5:68.94:101,0,69
21    37444697    rs2835266    G    A    1686.32    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=3.319;DB;DP=119;Dels=0.0;FS=10.245;HRun=0;HaplotypeScore=2.5264;MQ=59.69;MQ0=0;MQRankSum=-0.109;QD=14.17;ReadPosRankSum=1.174;SNPEFF_AMINO_ACID_CHANGE=R208Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_37444472_37444831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CBR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399191    GT:AD:DP:GQ:PL    0/1:63,56:119:99:1716,0,2004
21    37502585    rs35941684    C    G    40.06    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.4;MQ0=0;MQRankSum=-0.731;QD=8.01;ReadPosRankSum=-0.731;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    0/1:1,4:5:15.65:70,0,16
21    37502697    rs34691340    G    T    112.49    MQFilter40    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.87;MQ0=2;MQRankSum=-0.278;QD=8.65;ReadPosRankSum=0.278;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    0/1:6,7:13:99:142,0,106
21    37502950    rs2242801    G    T    3642.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9881;MQ=58.23;MQ0=0;QD=35.71;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3643,271,0
21    37503022    rs2242802    C    T    1528.77    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.661;DB;DP=122;Dels=0.0;FS=0.687;HRun=2;HaplotypeScore=2.2312;MQ=59.11;MQ0=0;MQRankSum=-0.351;QD=12.53;ReadPosRankSum=2.487;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    0/1:66,55:122:99:1559,0,2049
21    37503046    rs71330647    G    C    1741.01    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=1.985;DB;DP=122;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.782;MQ=59.11;MQ0=0;MQRankSum=-0.542;QD=14.15;ReadPosRankSum=1.154;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    0/1:64,58:122:99:1771,0,1733
21    37507745    rs881711    C    T    580.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.63;SNPEFF_AMINO_ACID_CHANGE=N85;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_37507210_37507779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    1/1:0,21:21:45.15:613,45,0
21    37507769    rs881712    C    T    213.46    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.068;QD=15.25;ReadPosRankSum=0.91;SNPEFF_AMINO_ACID_CHANGE=V93;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_37507210_37507779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    0/1:7,7:14:99:243,0,191
21    37509995    rs12626192    C    T    79.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
21    37518362    rs2835286    A    G    151.54    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.488;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.058;QD=10.1;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    0/1:8,7:15:99:182,0,250
21    37518582    rs17849671    G    A    437.41    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.56;DB;DP=25;Dels=0.0;FS=1.619;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.137;QD=17.5;ReadPosRankSum=-0.082;SNPEFF_AMINO_ACID_CHANGE=T202;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_37518374_37518864;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    0/1:11,14:25:99:467,0,315
21    37518850    rs34911362    G    A    269.74    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.444;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.246;QD=12.84;ReadPosRankSum=-0.88;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290354    GT:AD:DP:GQ:PL    0/1:11,10:21:99:300,0,385
21    37571667    rs7281674    T    A    221.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270190    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:255,21,0
21    37572810    rs9979031    G    A    251.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DB;DP=20;Dels=0.0;FS=2.017;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.265;QD=12.55;ReadPosRankSum=-0.567;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270190    GT:AD:DP:GQ:PL    0/1:10,10:20:99:281,0,257
21    37572857    rs118183027    G    A    74.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.361;QD=7.49;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000270190    GT:AD:DP:GQ:PL    0/1:5,5:10:99:105,0,111
21    37586236    rs73202247    T    C    222.14    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.895;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.214;QD=22.21;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492760    GT:AD:DP:GQ:PL    0/1:3,7:10:96.94:252,0,97
21    37586877    rs2850079    T    C    4203.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.23;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492760    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4203,313,0
21    37587049    rs60505633    G    A    33.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=6.8;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492760    GT:AD:DP:GQ:PL    0/1:3,2:5:63.98:64,0,102
21    37604976    rs2239570    G    A    321.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.511;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=21.45;ReadPosRankSum=0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399151    GT:AD:DP:GQ:PL    0/1:5,10:15:99:352,0,127
21    37609571    rs2835322    T    C    1073.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.02;SNPEFF_AMINO_ACID_CHANGE=R878;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_37609560_37609712;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399151    GT:AD:DP:GQ:PL    1/1:0,36:37:84.26:1107,84,0
21    37617630    rs4817788    T    G    1344.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=C1118G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_37617346_37618975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOPEY2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399151    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1378,108,0
21    37706092    rs182410533    T    G    192.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.515;QD=10.69;ReadPosRankSum=-0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MORC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400485    GT:AD:DP:GQ:PL    0/1:6,12:18:99:222,0,206
21    37728892    .    C    CTTGAA    5556.14    PASS    AC=2;AF=1.00;AN=2;DP=63;FS=0.0;HRun=0;HaplotypeScore=223.9872;IndelType=I;MQ=52.29;MQ0=0;QD=88.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MORC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400485    GT:AD:DP:GQ:PL    1/1:12,46:63:99:5556,187,0
21    37729088    rs2835339    G    C    874.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.04;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MORC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400485    GT:AD:DP:GQ:PL    1/1:0,29:29:72.22:908,72,0
21    37769852    rs73902504    A    G    287.86    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=3.187;DB;DP=24;Dels=0.0;FS=2.395;HRun=0;HaplotypeScore=0.5784;MQ=59.22;MQ0=0;MQRankSum=0.406;QD=11.99;ReadPosRankSum=-0.637;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314103    GT:AD:DP:GQ:PL    0/1:13,11:24:99:318,0,398
21    37774804    rs73902506    C    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHAF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480486    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
21    38071988    rs116948941    A    G    96.72    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.368;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;MQRankSum=-0.922;QD=10.75;ReadPosRankSum=0.922;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460783    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,102
21    38072356    rs2269188    G    C    42.75    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.25;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290399    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:73,0,29
21    38092039    rs2070650    A    C    292.30    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=0.227;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.548;QD=9.43;ReadPosRankSum=-0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290399    GT:AD:DP:GQ:PL    0/1:20,11:31:99:322,0,693
21    38092160    rs147054081    T    C    929.92    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=2.812;DB;DP=81;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.27;QD=11.48;ReadPosRankSum=0.911;SNPEFF_AMINO_ACID_CHANGE=H129;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38092122_38092230;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290399    GT:AD:DP:GQ:PL    0/1:43,38:81:99:960,0,1079
21    38092247    rs145363163    GA    G    190.49    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.335;DB;DP=37;FS=3.081;HRun=11;HaplotypeScore=172.3405;IndelType=D;MQ=59.96;MQ0=0;MQRankSum=0.711;QD=5.15;ReadPosRankSum=0.084;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290399    GT:AD:DP:GQ:PL    0/1:23,13:37:99:230,0,436
21    38113998    rs2070519    C    A    234.08    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=26.01;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290399    GT:AD:DP:GQ:PL    0/1:1,8:9:13.72:264,0,14
21    38117040    rs2073416    G    A    162.55    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DB;DP=16;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=10.16;ReadPosRankSum=1.356;SNPEFF_AMINO_ACID_CHANGE=S393;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38117029_38117437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000290399    GT:AD:DP:GQ:PL    0/1:10,6:16:99:193,0,310
21    38117308    rs2073601    C    A    718.89    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.574;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;MQRankSum=0.724;QD=11.98;ReadPosRankSum=0.53;SNPEFF_AMINO_ACID_CHANGE=L483M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38117029_38117437;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290399    GT:AD:DP:GQ:PL    0/1:34,26:60:99:749,0,1058
21    38117505    rs2073602    C    T    36.84    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=7.37;ReadPosRankSum=1.231;SNPEFF_AMINO_ACID_CHANGE=G548;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38117029_38118219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000430056    GT:AD:DP:GQ:PL    0/1:3,2:5:66.83:67,0,88
21    38118089    rs9982519    G    C    50.52    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=10.1;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290399    GT:AD:DP:GQ:PL    0/1:1,4:5:25.32:81,0,25
21    38128707    rs9977769    G    A    55.27    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.31;MQ0=0;MQRankSum=-1.231;QD=11.05;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:56.19:85,0,56
21    38129122    rs2845804    A    C    229.04    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.666;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.933;QD=12.72;ReadPosRankSum=-0.755;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SIM2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,8:18:99:259,0,344
21    38132172    rs2073420    C    T    1286.54    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=5.115;DB;DP=93;Dels=0.0;FS=2.066;HRun=0;HaplotypeScore=3.8431;MQ=59.25;MQ0=0;MQRankSum=-0.878;QD=13.83;ReadPosRankSum=-0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336648    GT:AD:DP:GQ:PL    0/1:49,42:93:99:1317,0,1300
21    38139632    rs2073421    C    A    220.99    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.291;DB;DP=23;Dels=0.0;FS=1.824;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.283;QD=9.61;ReadPosRankSum=-0.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336648    GT:AD:DP:GQ:PL    0/1:14,9:23:99:251,0,438
21    38302769    rs2073425    C    T    738.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336648    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:771,60,0
21    38302883    rs2282501    G    A    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336648    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    38308552    rs2835539    C    T    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HLCS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419461    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
21    38380225    rs2277784    G    A    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DSCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329553    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
21    38380368    rs2277786    A    G    154.50    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=19.31;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DSCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329553    GT:AD:DP:GQ:PL    0/1:2,6:8:58.74:184,0,59
21    38439504    rs2835570    A    G    1928.03    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.085;DB;DP=108;Dels=0.0;FS=6.422;HRun=0;HaplotypeScore=1.4942;MQ=58.75;MQ0=0;MQRankSum=0.117;QD=17.85;ReadPosRankSum=0.009;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430792    GT:AD:DP:GQ:PL    0/1:42,66:108:99:1958,0,1322
21    38439686    rs11702061    A    G    2544.68    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=0.5;DB;DP=180;Dels=0.0;FS=2.854;HRun=0;HaplotypeScore=1.995;MQ=59.74;MQ0=0;MQRankSum=0.212;QD=14.14;ReadPosRankSum=0.876;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430792    GT:AD:DP:GQ:PL    0/1:91,89:180:99:2575,0,2670
21    38444863    rs2507733    C    T    5847.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=57.87;MQ0=0;QD=32.85;SNPEFF_AMINO_ACID_CHANGE=A9T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38444734_38445111;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000464265    GT:AD:DP:GQ:PL    1/1:0,178:178:99:5848,442,0
21    38444881    rs73200245    G    A    1693.37    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.985;DB;DP=152;Dels=0.0;FS=6.465;HRun=0;HaplotypeScore=1.6316;MQ=58.0;MQ0=0;MQRankSum=1.898;QD=11.14;ReadPosRankSum=0.696;SNPEFF_AMINO_ACID_CHANGE=P3S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38444734_38445111;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000464265    GT:AD:DP:GQ:PL    0/1:82,69:152:99:1723,0,2255
21    38444890    rs2298682    A    G    1933.40    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=134;Dels=0.0;FS=7.877;HRun=1;HaplotypeScore=2.6249;MQ=58.08;MQ0=0;MQRankSum=0.554;QD=14.43;ReadPosRankSum=-1.298;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360525    GT:AD:DP:GQ:PL    0/1:60,73:134:99:1963,0,1622
21    38444995    rs7280542    A    G    1135.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.9;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360525    GT:AD:DP:GQ:PL    1/1:0,42:42:93.27:1169,93,0
21    38445069    rs2298683    T    C    222.42    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.566;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.377;QD=20.22;ReadPosRankSum=1.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360525    GT:AD:DP:GQ:PL    0/1:3,8:11:83.40:252,0,83
21    38445095    rs2298684    G    A    152.90    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.572;QD=19.11;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360525    GT:AD:DP:GQ:PL    0/1:2,6:8:48.45:183,0,48
21    38459725    rs2835583    A    G    1124.60    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.185;QD=13.71;ReadPosRankSum=0.506;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:43,39:82:99:1155,0,1305
21    38460338    rs2835584    T    A    35.13    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=8.78;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:2,2:4:59.79:65,0,60
21    38460488    rs2835585    T    A    48.99    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=5.44;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:5,4:9:78.98:79,0,181
21    38460890    rs3819262    G    T    30.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
21    38460891    rs56342756    G    T    30.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
21    38461326    rs2835586    G    A    83.66    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=16.73;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:2,3:5:29.72:114,0,30
21    38462614    rs3787780    A    G    511.29    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.372;DB;DP=39;Dels=0.0;FS=1.594;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=0.175;QD=13.11;ReadPosRankSum=0.029;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:20,19:39:99:541,0,580
21    38462716    rs2835588    A    G    35.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:4,3:7:65.93:66,0,142
21    38463406    rs2835590    A    G    107.33    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=21.47;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:137,0,26
21    38463436    rs3787786    T    C    152.02    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=21.72;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:2,5:7:58.94:182,0,59
21    38463452    rs3787787    T    C    154.07    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.159;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.652;QD=17.12;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:4,5:9:99:184,0,137
21    38466203    rs2835595    G    T    105.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.148;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.47;QD=10.55;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:5,5:10:99:135,0,156
21    38466261    rs3753070    T    A    353.45    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.192;DB;DP=30;Dels=0.0;FS=6.3;HRun=3;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=-0.118;QD=11.78;ReadPosRankSum=0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:9,21:30:99:383,0,270
21    38466539    rs2835597    C    T    76.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.14;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:1,3:4:28.61:107,0,29
21    38467556    rs11701444    G    A    302.93    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=4.133;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.693;QD=12.12;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:15,10:25:99:333,0,473
21    38467616    rs2006941    C    A    907.99    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.321;DB;DP=52;Dels=0.0;FS=1.661;HRun=1;HaplotypeScore=2.9177;MQ=59.56;MQ0=0;MQRankSum=-2.064;QD=17.46;ReadPosRankSum=-0.903;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:23,29:52:99:938,0,757
21    38467857    rs2251161    C    G    140.99    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.977;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=11.75;ReadPosRankSum=-0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:7,5:12:99:171,0,234
21    38468958    rs2835600    A    G    694.15    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.028;DB;DP=52;Dels=0.0;FS=1.105;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.249;QD=13.35;ReadPosRankSum=-1.037;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:28,24:52:99:724,0,804
21    38469017    rs2835601    T    G    405.99    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=0.534;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-1.202;QD=18.45;ReadPosRankSum=-2.204;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:9,13:22:99:436,0,304
21    38469069    rs2835602    G    C    214.42    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=17.87;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484047    GT:AD:DP:GQ:PL    0/1:5,7:12:99:244,0,171
21    38495185    rs11440324    G    GT    677.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=1;HaplotypeScore=101.395;IndelType=I;MQ=36.86;MQ0=0;QD=42.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:1,15:16:48.16:720,48,0
21    38495213    rs11440325    G    GA    756.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=3;HaplotypeScore=125.3896;IndelType=I;MQ=35.14;MQ0=0;QD=36.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:2,19:21:57.19:799,57,0
21    38495270    rs11440326    A    AT    1694.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.0;HRun=1;HaplotypeScore=128.7744;IndelType=I;MQ=49.27;MQ0=0;QD=42.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:1,39:40:99:1737,117,0
21    38496883    rs2835613    A    G    323.17    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.415;DB;DP=29;Dels=0.0;FS=6.276;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-1.195;QD=11.14;ReadPosRankSum=0.317;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:16,12:29:99:353,0,406
21    38498341    .    G    GT    250.06    PASS    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=1.152;DP=54;FS=10.193;HRun=14;HaplotypeScore=418.259;IndelType=I;MQ=45.55;MQ0=0;MQRankSum=-0.783;QD=4.63;ReadPosRankSum=-0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:34,14:54:99:289,0,127
21    38501279    rs2835617    G    A    516.39    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.024;DB;DP=52;Dels=0.0;FS=4.369;HRun=2;HaplotypeScore=0.8667;MQ=59.19;MQ0=0;MQRankSum=-0.737;QD=9.93;ReadPosRankSum=1.962;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:31,21:52:99:546,0,908
21    38504928    rs67638494    A    G    235.89    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.998;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.153;QD=13.88;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:9,8:17:99:266,0,279
21    38507572    rs2252893    T    C    187.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=20.87;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:3,6:9:80.02:218,0,80
21    38512956    rs1133001    A    G    1362.68    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=113;Dels=0.0;FS=8.298;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=0.61;QD=12.06;ReadPosRankSum=-2.243;SNPEFF_AMINO_ACID_CHANGE=V275;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38512861_38512973;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540756    GT:AD:DP:GQ:PL    0/1:60,53:113:99:1393,0,1944
21    38517058    rs764175    C    T    392.60    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.545;QD=21.81;ReadPosRankSum=-1.264;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:6,12:18:99:423,0,150
21    38520720    rs2252402    G    A    220.42    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=14;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.965;QD=15.74;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:6,8:14:99:250,0,173
21    38522353    rs111874393    GT    G    195.60    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=2.135;DB;DP=32;FS=11.508;HRun=14;HaplotypeScore=144.2975;IndelType=D;MQ=57.76;MQ0=0;MQRankSum=0.231;QD=6.11;ReadPosRankSum=-0.643;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:12,15:32:99:235,0,147
21    38522618    rs2257091    G    T    40.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.44;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:70,0,24
21    38523266    rs3737540    C    A    295.32    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.188;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.372;QD=15.54;ReadPosRankSum=-0.867;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:8,11:19:99:325,0,267
21    38525198    rs2051162    G    A    65.39    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=6.54;ReadPosRankSum=-1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450533    GT:AD:DP:GQ:PL    0/1:6,4:10:95.38:95,0,219
21    38525356    rs1053808    T    C    1219.33    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=84;Dels=0.0;FS=4.411;HRun=0;HaplotypeScore=0.9159;MQ=59.5;MQ0=0;MQRankSum=-2.125;QD=14.52;ReadPosRankSum=0.9;SNPEFF_AMINO_ACID_CHANGE=M530T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38525251_38525623;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540756    GT:AD:DP:GQ:PL    0/1:38,46:84:99:1249,0,1141
21    38525652    rs767998    T    G    78.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450533    GT:AD:DP:GQ:PL    0/1:2,4:6:66.42:109,0,66
21    38528866    rs2835635    A    G    272.63    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.204;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.6651;MQ=58.78;MQ0=0;MQRankSum=-0.367;QD=14.35;ReadPosRankSum=-0.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450533    GT:AD:DP:GQ:PL    0/1:10,9:19:99:303,0,354
21    38528872    rs10706050    TG    T    698.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=2;HaplotypeScore=85.3439;IndelType=D;MQ=59.36;MQ0=0;QD=36.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450533    GT:AD:DP:GQ:PL    1/1:0,19:19:57.19:741,57,0
21    38531863    rs4817852    T    C    355.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=35.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:389,30,0
21    38531871    rs2835636    T    C    190.26    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.387;QD=17.3;ReadPosRankSum=-0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:5,6:11:99:220,0,141
21    38531921    rs1787365    C    A    641    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=32.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:0,20:20:54.16:674,54,0
21    38532058    rs142157464    TG    T    1124.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=2;HaplotypeScore=276.2197;IndelType=D;MQ=33.41;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:2,30:32:90.29:1166,90,0
21    38532068    rs113972351    G    GA    1243.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=2;HaplotypeScore=281.4834;IndelType=I;MQ=33.16;MQ0=0;QD=38.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:6,26:32:90.30:1286,90,0
21    38532086    rs34586966    TG    T    965.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=1;HaplotypeScore=213.5193;IndelType=D;MQ=33.54;MQ0=0;QD=40.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:0,24:24:72.24:1008,72,0
21    38532192    rs76114319    A    AT    390.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=2;HaplotypeScore=18.5104;IndelType=I;MQ=37.32;MQ0=0;QD=39.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:432,30,0
21    38537743    rs2835641    A    C    585.36    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=0.576;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.652;QD=18.29;ReadPosRankSum=-1.266;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:13,19:32:99:615,0,421
21    38539836    rs5843803    T    TA    859.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=1;HaplotypeScore=48.1864;IndelType=I;MQ=59.7;MQ0=0;QD=39.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418766    GT:AD:DP:GQ:PL    1/1:1,21:22:62.80:902,63,0
21    38567902    rs2835659    C    T    1707.62    PASS    AB=0.537;AC=1;AF=0.50;AN=2;BaseQRankSum=0.206;DB;DP=149;Dels=0.0;FS=2.46;HRun=1;HaplotypeScore=3.7048;MQ=59.69;MQ0=0;MQRankSum=0.367;QD=11.46;ReadPosRankSum=-1.559;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:80,69:149:99:1738,0,2497
21    38567911    rs7280251    T    C    1932.62    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=5.588;DB;DP=164;Dels=0.0;FS=1.369;HRun=2;HaplotypeScore=2.8804;MQ=59.72;MQ0=0;MQRankSum=-0.216;QD=11.78;ReadPosRankSum=-0.973;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:89,75:164:99:1963,0,2723
21    38568009    rs1053966    G    C    1996.09    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=0.013;DB;DP=154;Dels=0.0;FS=1.36;HRun=1;HaplotypeScore=2.9288;MQ=59.58;MQ0=0;MQRankSum=1.174;QD=12.96;ReadPosRankSum=0.312;SNPEFF_AMINO_ACID_CHANGE=D1751H;SNPEFF_CODON_CHANGE=Gac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38567976_38568337;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:83,71:154:99:2026,0,2630
21    38568308    rs6579    C    T    237.66    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.681;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=56.78;MQ0=0;MQRankSum=0.033;QD=10.8;ReadPosRankSum=-0.824;SNPEFF_AMINO_ACID_CHANGE=H1850;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38567976_38568337;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:12,10:22:99:268,0,424
21    38568475    rs762139    A    T    74.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=12.38;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:2,4:6:68.47:104,0,68
21    38570055    rs71328565    T    TAA    254.65    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.469;DB;DP=26;FS=2.103;HRun=14;HaplotypeScore=272.6262;IndelType=I;MQ=52.45;MQ0=0;MQRankSum=-1.469;QD=9.79;ReadPosRankSum=-0.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354749    GT:AD:DP:GQ:PL    0/1:12,8:26:99:294,0,149
21    38574018    rs1053984    C    T    41.49    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.37;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488522    GT:AD:DP:GQ:PL    0/1:2,2:4:69.92:71,0,70
21    38574092    rs2835665    A    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TTC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488522    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
21    38593620    rs13864    G    T    627.09    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.331;DB;DP=35;Dels=0.0;FS=5.731;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=-0.354;QD=17.92;ReadPosRankSum=-1.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288304    GT:AD:DP:GQ:PL    0/1:14,21:35:99:657,0,322
21    38599934    rs11300896    TG    T    922.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.0;HRun=3;HaplotypeScore=73.5795;IndelType=D;MQ=59.95;MQ0=0;QD=34.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495858    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:965,78,0
21    38600154    rs67864559    CG    C    282.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=25.105;IndelType=D;MQ=61.19;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495858    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:324,27,0
21    38792786    rs143066663    TGGG    T    337.09    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=3.281;DB;DP=16;FS=3.59;HRun=6;HaplotypeScore=62.0294;IndelType=D;MQ=56.25;MQ0=0;MQRankSum=-0.423;QD=21.07;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321219    GT:AD:DP:GQ:PL    0/1:7,9:16:99:376,0,428
21    38845294    rs2898316    G    A    214.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.368;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.208;QD=13.41;ReadPosRankSum=-0.998;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455097    GT:AD:DP:GQ:PL    0/1:8,8:16:99:245,0,268
21    38850640    rs928763    G    A    951.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321219    GT:AD:DP:GQ:PL    1/1:0,28:28:72.24:984,72,0
21    38850759    rs10211972    G    A    53.62    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.422;QD=5.96;ReadPosRankSum=-0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321219    GT:AD:DP:GQ:PL    0/1:6,3:9:83.61:84,0,216
21    38858938    rs55650427    G    A    556.04    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.435;DB;DP=33;Dels=0.0;FS=5.17;HRun=0;HaplotypeScore=1.8835;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=16.85;ReadPosRankSum=0.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462274    GT:AD:DP:GQ:PL    0/1:16,17:33:99:586,0,432
21    38862376    rs4817866    G    A    337.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462274    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:370,30,0
21    38862862    rs67837743    C    T    81.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462274    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
21    38865507    rs2835772    C    G    769.84    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=1.183;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=59.6;MQ0=0;MQRankSum=1.354;QD=16.38;ReadPosRankSum=1.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000321219    GT:AD:DP:GQ:PL    0/1:22,25:47:99:800,0,762
21    38884966    rs113576383    A    AT    86.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=10;HaplotypeScore=31.4982;IndelType=I;MQ=60.0;MQ0=0;QD=10.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DYRK1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398956    GT:AD:DP:GQ:PL    1/1:3,5:8:12.03:128,12,0
21    38997701    rs702859    G    A    1561.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=39.03;SNPEFF_AMINO_ACID_CHANGE=D344;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_38997461_38997786;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288309    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1594,117,0
21    39086965    rs2070995    T    C    1665.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.23;SNPEFF_AMINO_ACID_CHANGE=P165;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_39086514_39087434;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288309    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1699,138,0
21    39213020    rs2836016    G    A    3134.71    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.957;DB;DP=209;DS;Dels=0.0;FS=10.357;HRun=1;HaplotypeScore=0.7887;MQ=59.67;MQ0=0;MQRankSum=-1.373;QD=15.0;ReadPosRankSum=1.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288309    GT:AD:DP:GQ:PL    0/1:103,106:209:99:3165,0,3102
21    39492470    .    A    T    1065.83    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.464;DP=58;Dels=0.0;FS=6.284;HRun=1;HaplotypeScore=1.7845;MQ=60.0;MQ0=0;MQRankSum=-0.141;QD=18.38;ReadPosRankSum=-1.497;SNPEFF_AMINO_ACID_CHANGE=I54N;SNPEFF_CODON_CHANGE=aTc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_39492401_39492502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328264    GT:AD:DP:GQ:PL    0/1:21,36:58:99:1096,0,642
21    39671476    rs2230033    G    A    3233.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=59.75;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=G98D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_39671166_39673743;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328656    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3268,241,0
21    39755976    rs12233325    T    A    68.82    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=17.2;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288319    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:99,0,26
21    39774348    rs2836372    C    G    138.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=27.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473107    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:172,15,0
21    39775373    rs2836373    A    G    514.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473107    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:548,45,0
21    39822650    rs2211871    G    T    155.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288319    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:188,15,0
21    39822901    rs147877818    T    C    1096.15    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.559;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.7;MQ0=0;MQRankSum=-0.282;QD=14.05;ReadPosRankSum=-0.508;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288319    GT:AD:DP:GQ:PL    0/1:35,43:78:99:1126,0,1070
21    39822906    rs9305648    G    C    2510.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.69;MQ0=0;QD=33.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288319    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2543,190,0
21    39823349    rs2051165    T    C    127.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;QD=31.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288319    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
21    39870310    rs2836441    G    A    1113.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398897    GT:AD:DP:GQ:PL    1/1:0,35:35:81.27:1146,81,0
21    39947697    rs8129955    A    G    472.11    PASS    AB=0.32;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.262;DB;DP=25;Dels=0.0;FS=2.442;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.961;QD=18.88;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398897    GT:AD:DP:GQ:PL    0/1:8,17:25:99:502,0,234
21    39947711    rs2836526    C    T    190.91    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.052;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.112;QD=9.09;ReadPosRankSum=-1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ERG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398897    GT:AD:DP:GQ:PL    0/1:14,7:21:99:221,0,459
21    40190620    rs10854389    C    G    1312.61    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=1.156;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.43;MQ0=0;MQRankSum=0.015;QD=16.21;ReadPosRankSum=-0.092;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432278    GT:AD:DP:GQ:PL    0/1:37,44:81:99:1343,0,1235
21    40191431    rs457705    T    G    824.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=28.43;SNPEFF_AMINO_ACID_CHANGE=T272;SNPEFF_CODON_CHANGE=acT/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40191427_40191690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360214    GT:AD:DP:GQ:PL    1/1:0,29:29:72.19:857,72,0
21    40191638    rs461155    A    G    625.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_AMINO_ACID_CHANGE=P341;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40191427_40191690;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ETS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360214    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:658,48,0
21    40250361    rs11464500    T    TAA    410.06    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.97;DB;DP=38;FS=0.0;HRun=11;HaplotypeScore=212.4471;IndelType=I;MQ=57.91;MQ0=0;MQRankSum=-0.307;QD=10.79;ReadPosRankSum=1.392;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMPRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553129    GT:AD:DP:GQ:PL    0/1:22,13:38:99:449,0,422
21    40250762    rs5843936    GA    G    2296.20    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=10.558;DB;DP=154;FS=1.307;HRun=1;HaplotypeScore=667.0026;IndelType=D;MQ=60.63;MQ0=0;MQRankSum=-0.381;QD=14.91;ReadPosRankSum=0.999;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMPRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553129    GT:AD:DP:GQ:PL    0/1:83,71:154:99:2335,0,3515
21    40250766    rs1569306    G    A    1450.52    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=3.532;DB;DP=153;Dels=0.0;FS=0.61;HRun=1;HaplotypeScore=1.7878;MQ=60.56;MQ0=0;MQRankSum=1.654;QD=9.48;ReadPosRankSum=0.645;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMPRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553129    GT:AD:DP:GQ:PL    0/1:82,71:153:99:1481,0,2434
21    40547329    rs9305669    T    C    160.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380900    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
21    40547387    rs9305670    A    G    502.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380900    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:536,39,0
21    40549289    rs2142111    G    C    111.76    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.662;DB;DP=21;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=1.9648;MQ=58.89;MQ0=0;MQRankSum=0.195;QD=5.32;ReadPosRankSum=-1.285;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331573    GT:AD:DP:GQ:PL    0/1:15,6:21:99:142,0,514
21    40549466    rs14194    T    C    697.18    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.396;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.172;QD=13.94;ReadPosRankSum=-0.932;SNPEFF_AMINO_ACID_CHANGE=P208;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40549361_40549497;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380900    GT:AD:DP:GQ:PL    0/1:24,26:50:99:727,0,776
21    40551944    rs11378221    G    GT    676.24    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=4.551;DB;DP=31;FS=0.0;HRun=1;HaplotypeScore=141.895;IndelType=I;MQ=58.09;MQ0=0;MQRankSum=-0.995;QD=21.81;ReadPosRankSum=-1.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:13,18:31:99:715,0,373
21    40552307    rs3171465    A    G    579.83    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.139;DB;DP=52;Dels=0.0;FS=10.399;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.343;QD=11.15;ReadPosRankSum=1.75;SNPEFF_AMINO_ACID_CHANGE=A99;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40552211_40552362;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000331573    GT:AD:DP:GQ:PL    0/1:30,22:52:99:610,0,1019
21    40552408    rs7280375    A    G    446.26    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.637;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.2;MQ0=0;MQRankSum=-0.065;QD=15.39;ReadPosRankSum=0.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:14,15:29:99:476,0,476
21    40553845    rs6517522    T    C    170.23    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.935;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.09;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:7,6:13:99:200,0,245
21    40555351    rs13052882    G    C    56.12    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=-0.358;QD=9.35;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:3,3:6:65.29:86,0,65
21    40571246    rs1041439    A    G    3095.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=59.5;MQ0=0;QD=33.28;SNPEFF_AMINO_ACID_CHANGE=L1699P;SNPEFF_CODON_CHANGE=cTa/cCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40570689_40571588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3128,229,0
21    40572072    rs2234543    G    A    622.50    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=3.875;DB;DP=32;Dels=0.0;FS=3.774;HRun=1;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=-2.302;QD=19.45;ReadPosRankSum=1.305;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380783    GT:AD:DP:GQ:PL    0/1:13,19:32:99:652,0,356
21    40574191    rs2836938    C    T    65.43    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=6.54;ReadPosRankSum=-0.296;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380783    GT:AD:DP:GQ:PL    0/1:7,3:10:95.43:95,0,254
21    40574305    rs2183573    A    G    924.71    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=0.343;DB;DP=57;Dels=0.0;FS=2.277;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=-0.487;QD=16.22;ReadPosRankSum=-1.556;SNPEFF_AMINO_ACID_CHANGE=S1511P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40574251_40574471;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:28,29:57:99:955,0,860
21    40574552    rs2150411    G    T    182.56    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.589;QD=22.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:2,6:8:59.39:213,0,59
21    40584412    rs8132424    A    T    74.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.59;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:104,0,30
21    40584598    rs6517529    C    T    2313.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.74;MQ0=0;QD=32.13;SNPEFF_AMINO_ACID_CHANGE=R1298;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40584592_40584633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2347,175,0
21    40585330    rs66990887    AAAGCCAACATTTTCTTCACTTT    A    2796.22    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=5.078;DB;DP=38;FS=0.0;HRun=0;HaplotypeScore=674.3714;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=-5.078;QD=73.58;ReadPosRankSum=1.703;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:22,16:38:99:2835,0,5781
21    40587003    rs11434832    G    GC    246.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=27.832;IndelType=I;MQ=60.0;MQ0=0;QD=41.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:288,18,0
21    40587049    rs4818004    A    G    359.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=29.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:0,12:12:36.07:393,36,0
21    40590624    rs35571600    A    C    181.55    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.803;DB;DP=19;Dels=0.0;FS=9.745;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.817;QD=9.56;ReadPosRankSum=1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:12,7:19:99:212,0,324
21    40597215    rs56127005    A    AAAG    489.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=21.3346;IndelType=I;MQ=43.31;MQ0=0;QD=61.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:2,6:8:24.08:531,24,0
21    40600313    rs11702268    T    C    212.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:0,6:7:18.06:246,18,0
21    40604429    rs2836950    C    G    477.32    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.79;DB;DP=62;Dels=0.0;FS=1.048;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.145;QD=7.7;ReadPosRankSum=-0.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:42,20:62:99:507,0,1329
21    40610274    rs2065312    G    T    156.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=26.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:189,15,0
21    40619887    rs2836955    G    A    60.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=7.58;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:5,3:8:90.61:91,0,184
21    40642189    rs6517532    C    T    1046.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:0,30:30:78.26:1080,78,0
21    40642386    rs2836968    A    G    346.43    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=3.065;DB;DP=17;Dels=0.0;FS=2.884;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.558;QD=20.38;ReadPosRankSum=-2.161;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:6,11:17:99:376,0,179
21    40646230    rs112427250    CGA    C    263.07    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=106.617;IndelType=D;MQ=57.2;MQ0=0;MQRankSum=-0.453;QD=13.85;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496759    GT:AD:DP:GQ:PL    0/1:9,8:19:99:302,0,191
21    40648265    rs2836969    G    A    145.02    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=16.11;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496759    GT:AD:DP:GQ:PL    0/1:4,5:9:99:175,0,136
21    40650621    rs973521    G    A    1702.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.8657;MQ=58.55;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1736,135,0
21    40652040    rs2836971    A    C    226.95    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.288;DB;DP=18;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=1.6671;MQ=60.0;MQ0=0;MQRankSum=-1.999;QD=12.61;ReadPosRankSum=1.555;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:8,10:18:99:257,0,249
21    40652142    rs2836972    G    A    684.52    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.368;DB;DP=42;Dels=0.0;FS=6.816;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=0.384;QD=16.3;ReadPosRankSum=-1.283;SNPEFF_AMINO_ACID_CHANGE=Y288;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40652074_40652174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:18,24:42:99:715,0,518
21    40666066    rs2836977    T    C    158.57    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=22.65;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341322    GT:AD:DP:GQ:PL    0/1:2,5:7:60.81:189,0,61
21    40670460    rs2056844    G    C    2063.46    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.822;DB;DP=198;Dels=0.0;FS=3.486;HRun=0;HaplotypeScore=1.9125;MQ=59.77;MQ0=0;MQRankSum=1.142;QD=10.42;ReadPosRankSum=-0.535;SNPEFF_AMINO_ACID_CHANGE=Q83E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40670358_40670508;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333229    GT:AD:DP:GQ:PL    0/1:116,82:198:99:2093,0,3514
21    40684861    rs2297258    C    G    185.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=30.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCRNA00257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539811    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:218,18,0
21    40685239    rs34240248    A    G    128.01    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.429;DB;DP=19;Dels=0.0;FS=1.829;HRun=2;HaplotypeScore=0.0;MQ=55.2;MQ0=0;MQRankSum=0.531;QD=6.74;ReadPosRankSum=-0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCRNA00257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539811    GT:AD:DP:GQ:PL    0/1:10,9:19:99:158,0,322
21    40685246    rs34436313    A    G    101.31    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=18;Dels=0.0;FS=1.957;HRun=2;HaplotypeScore=0.0;MQ=56.3;MQ0=0;MQRankSum=0.044;QD=5.63;ReadPosRankSum=0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCRNA00257;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539811    GT:AD:DP:GQ:PL    0/1:10,8:18:99:131,0,315
21    40715132    rs2070867    G    A    1930.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=46.19;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HMGN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463631    GT:AD:DP:GQ:PL    1/1:0,54:55:99:1964,147,0
21    40715175    rs2776308    A    G    482.84    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.196;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6598;MQ=47.73;MQ0=0;MQRankSum=-1.147;QD=17.88;ReadPosRankSum=-1.195;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HMGN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463631    GT:AD:DP:GQ:PL    0/1:12,15:27:99:513,0,345
21    40717035    rs72349214    TCACA    T    217.81    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=121.5675;IndelType=D;MQ=47.12;MQ0=0;MQRankSum=2.843;QD=18.15;ReadPosRankSum=-0.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HMGN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463631    GT:AD:DP:GQ:PL    0/1:2,6:12:99:257,0,296
21    40799955    rs2837028    A    C    663.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411566    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:696,51,0
21    40800371    rs2837029    C    T    300.30    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=2.997;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=59.36;MQ0=0;MQRankSum=-0.066;QD=8.34;ReadPosRankSum=0.198;SNPEFF_AMINO_ACID_CHANGE=G17S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40800098_40800429;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LCA5L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288350    GT:AD:DP:GQ:PL    0/1:23,13:36:99:330,0,686
21    40823902    rs11575939    C    G    905.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.327;DB;DP=60;Dels=0.0;FS=9.266;HRun=0;HaplotypeScore=0.0;MQ=58.91;MQ0=0;MQRankSum=0.311;QD=15.09;ReadPosRankSum=-0.715;SNPEFF_AMINO_ACID_CHANGE=D23E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40823756_40824067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333634    GT:AD:DP:GQ:PL    0/1:30,30:60:99:935,0,933
21    40823981    rs6517549    G    A    3227.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=58.88;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=D50N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40823756_40824067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333634    GT:AD:DP:GQ:PL    1/1:0,100:100:99:3261,244,0
21    40824161    rs2837037    C    T    268.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.949;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.462;QD=12.81;ReadPosRankSum=0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333634    GT:AD:DP:GQ:PL    0/1:12,9:21:99:299,0,367
21    40847011    rs874221    T    C    255.98    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.193;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.965;QD=18.28;ReadPosRankSum=-0.715;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333634    GT:AD:DP:GQ:PL    0/1:6,8:14:99:286,0,204
21    40847196    rs940625    A    G    392.78    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.079;QD=19.64;ReadPosRankSum=-1.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333634    GT:AD:DP:GQ:PL    0/1:7,13:20:99:423,0,232
21    40847249    rs760284    T    G    328.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333634    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:361,27,0
21    40871810    rs9974333    T    C    1058.70    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.397;DB;DP=80;Dels=0.0;FS=17.311;HRun=0;HaplotypeScore=1.7262;MQ=59.71;MQ0=0;MQRankSum=-0.025;QD=13.23;ReadPosRankSum=-0.369;SNPEFF_AMINO_ACID_CHANGE=V188A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40871749_40871841;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000333634    GT:AD:DP:GQ:PL    0/1:37,43:80:99:1089,0,1096
21    40880881    rs11575941    CTTGAA    C    826.75    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=5.189;DB;DP=40;FS=3.716;HRun=0;HaplotypeScore=209.206;IndelType=D;MQ=59.36;MQ0=0;MQRankSum=0.429;QD=20.67;ReadPosRankSum=-0.488;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333634    GT:AD:DP:GQ:PL    0/1:24,16:40:99:866,0,1978
21    40883671    rs75027626    G    GAGA    1579.02    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.769;DB;DP=68;FS=5.679;HRun=0;HaplotypeScore=230.7643;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=1.081;QD=23.22;ReadPosRankSum=0.677;SNPEFF_AMINO_ACID_CHANGE=G119GE;SNPEFF_CODON_CHANGE=gga/ggAGAa;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_21_40883607_40883736;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3BGR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380631    GT:AD:DP:GQ:PL    0/1:40,28:68:99:1618,0,1246
21    40969621    rs661650    C    T    201.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=28.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380620    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:234,18,0
21    40969826    rs662571    G    C    53.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_AMINO_ACID_CHANGE=C81W;SNPEFF_CODON_CHANGE=tgC/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_40969074_40969916;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C21orf88;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380612    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:85,6,0
21    40971464    rs582539    G    C    308.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380620    GT:AD:DP:GQ:PL    1/1:0,10:10:30.05:342,30,0
21    40977763    rs73360110    C    T    228.39    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.106;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.445;QD=12.02;ReadPosRankSum=0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380620    GT:AD:DP:GQ:PL    0/1:11,8:19:99:258,0,394
21    40977826    rs506382    A    G    1392.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;QD=31.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380620    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1426,120,0
21    40978010    rs508141    T    C    857.07    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=49;Dels=0.0;FS=1.45;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=-0.805;QD=17.49;ReadPosRankSum=0.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380620    GT:AD:DP:GQ:PL    0/1:20,29:49:99:887,0,671
21    40978115    rs78905016    C    T    791.59    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=46;Dels=0.0;FS=4.534;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.08;QD=17.21;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380620    GT:AD:DP:GQ:PL    0/1:20,26:46:99:822,0,639
21    40984309    rs74789072    G    C    180.81    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.106;QD=16.44;ReadPosRankSum=0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380620    GT:AD:DP:GQ:PL    0/1:3,8:11:97.96:211,0,98
21    41032740    rs3746887    T    C    877    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.42;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=M85T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_41032487_41034815;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343118    GT:AD:DP:GQ:PL    1/1:0,26:26:72.21:910,72,0
21    41032804    rs734413    G    A    1200.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.33;MQ0=0;QD=36.38;SNPEFF_AMINO_ACID_CHANGE=T106;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_41032487_41034815;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=B3GALT5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343118    GT:AD:DP:GQ:PL    1/1:0,33:33:93.29:1234,93,0
21    41117368    rs403527    G    A    253.93    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=0.694;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.4;MQ0=0;MQRankSum=-2.237;QD=19.53;ReadPosRankSum=0.386;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMPRSS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000553129    GT:AD:DP:GQ:PL    0/1:4,9:13:99:284,0,113
21    41117533    rs425320    T    C    70.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=8.83;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    0/1:4,4:8:99:101,0,110
21    41137362    rs9784201    A    C    400.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    1/1:0,15:15:36.08:433,36,0
21    41137499    rs12626544    A    G    534.85    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=58;Dels=0.0;FS=10.208;HRun=0;HaplotypeScore=2.3046;MQ=59.2;MQ0=0;MQRankSum=0.799;QD=9.22;ReadPosRankSum=0.644;SNPEFF_AMINO_ACID_CHANGE=Q46;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_41137462_41137779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    0/1:33,24:58:99:565,0,1104
21    41137507    rs2205204    G    C    1953.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.17;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=R49T;SNPEFF_CODON_CHANGE=aGa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_41137462_41137779;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1987,147,0
21    41142742    rs2837198    A    G    41.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=1.231;QD=8.39;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    0/1:3,2:5:68.40:72,0,68
21    41142775    rs73217279    A    G    132.24    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.879;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.8;MQ0=0;MQRankSum=0.537;QD=7.78;ReadPosRankSum=0.342;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    0/1:10,7:17:99:162,0,284
21    41142803    rs2837199    T    C    605.50    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=2.173;DB;DP=40;Dels=0.0;FS=3.399;HRun=0;HaplotypeScore=0.0;MQ=58.25;MQ0=0;MQRankSum=-1.17;QD=15.14;ReadPosRankSum=-1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    0/1:20,19:40:99:635,0,501
21    41160242    rs456818    A    G    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479378    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
21    41165249    rs16998519    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
21    41165301    rs464574    A    G    63.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=7.05;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    0/1:6,3:9:93.46:93,0,215
21    41165418    rs16998521    G    A    749.21    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.76;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.874;QD=16.65;ReadPosRankSum=-0.997;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    0/1:19,25:45:99:779,0,615
21    41165566    rs460504    T    C    548.42    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.073;DB;DP=46;Dels=0.0;FS=1.687;HRun=0;HaplotypeScore=0.7887;MQ=59.5;MQ0=0;MQRankSum=-0.75;QD=11.92;ReadPosRankSum=-0.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380588    GT:AD:DP:GQ:PL    0/1:25,21:46:99:578,0,894
21    41270521    rs2075719    C    T    745.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328619    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:778,57,0
21    41270564    rs2837273    C    T    467.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328619    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:500,36,0
21    41300976    .    G    A    1259.63    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.562;DP=75;Dels=0.0;FS=0.897;HRun=0;HaplotypeScore=3.1558;MQ=60.0;MQ0=0;MQRankSum=-0.093;QD=16.8;ReadPosRankSum=1.664;SNPEFF_AMINO_ACID_CHANGE=A43;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_41300909_41301322;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328619    GT:AD:DP:GQ:PL    0/1:33,42:75:99:1290,0,929
21    41434671    rs2837408    T    C    262.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:295,24,0
21    41450573    rs2297259    C    T    357.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:390,30,0
21    41457292    rs408241    T    A    76.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
21    41514421    rs11701139    G    C    234.51    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.626;QD=10.66;ReadPosRankSum=-1.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    0/1:10,12:22:99:265,0,327
21    41514688    rs75752016    TA    T    1204.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=2;HaplotypeScore=100.0237;IndelType=D;MQ=59.92;MQ0=0;QD=35.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    1/1:2,32:34:96.31:1247,96,0
21    41516251    rs3818650    G    A    250.19    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=58.33;MQ0=0;MQRankSum=0.533;QD=17.87;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    0/1:6,8:14:86.78:280,0,87
21    41516293    rs2297264    C    T    237.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.625;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.739;QD=16.94;ReadPosRankSum=-0.471;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    0/1:6,8:14:99:267,0,179
21    41516322    rs2297265    T    G    213.61    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.837;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.021;QD=10.68;ReadPosRankSum=-0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    0/1:10,10:20:99:244,0,322
21    41516366    rs2297266    G    A    727.64    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=3.815;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=0.355;QD=16.17;ReadPosRankSum=-1.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    0/1:19,26:45:99:758,0,478
21    41551175    rs3804022    G    C    43.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.5;MQ0=0;MQRankSum=0.0;QD=10.91;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    0/1:2,2:4:31.62:74,0,32
21    41725630    rs2297270    G    C    349.75    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DB;DP=23;Dels=0.0;FS=2.291;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.585;QD=15.21;ReadPosRankSum=1.139;SNPEFF_AMINO_ACID_CHANGE=D232E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_41725392_41725670;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    0/1:11,12:23:99:380,0,334
21    41949383    .    G    GC    258.63    PASS    AC=2;AF=1.00;AN=2;DP=8;FS=0.0;HRun=6;HaplotypeScore=45.7079;IndelType=I;MQ=58.46;MQ0=0;QD=32.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:301,24,0
21    41949401    rs458934    T    C    361.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.77;MQ0=0;QD=36.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DSCAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400454    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:395,30,0
21    42622657    rs960231    G    C    481.65    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=0.192;DB;DP=41;Dels=0.0;FS=7.475;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.122;QD=11.75;ReadPosRankSum=0.547;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491838    GT:AD:DP:GQ:PL    0/1:23,18:41:99:512,0,757
21    42622786    rs1046210    C    T    432.69    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=2.395;DB;DP=41;Dels=0.0;FS=5.274;HRun=0;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.992;QD=10.55;ReadPosRankSum=1.283;SNPEFF_AMINO_ACID_CHANGE=D269;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_42622679_42622828;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BACE2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544566    GT:AD:DP:GQ:PL    0/1:24,17:41:99:463,0,742
21    42717662    rs417708    T    C    522.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.49;SNPEFF_AMINO_ACID_CHANGE=G132;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_42717613_42717663;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357985    GT:AD:DP:GQ:PL    1/1:0,19:19:42.13:555,42,0
21    42749189    rs379839    A    G    344.15    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.349;DB;DP=27;Dels=0.0;FS=3.736;HRun=1;HaplotypeScore=0.734;MQ=57.39;MQ0=0;MQRankSum=-0.467;QD=12.75;ReadPosRankSum=0.311;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416447    GT:AD:DP:GQ:PL    0/1:16,11:27:99:374,0,474
21    42767733    rs440364    T    C    609.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330714    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:643,48,0
21    42771362    rs81481    T    C    403.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543692    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:437,33,0
21    42771434    rs121641    A    G    84.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543692    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
21    42771446    rs77518    A    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543692    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
21    42775179    rs112479250    G    GT    1355.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=47;FS=0.0;HRun=5;HaplotypeScore=282.4285;IndelType=I;MQ=60.27;MQ0=0;MQRankSum=1.654;QD=28.84;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493753    GT:AD:DP:GQ:PL    1/1:3,43:47:99:1398,124,0
21    42775180    rs459763    C    T    96.04    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=43.934;MQ=60.27;MQ0=0;QD=2.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493753    GT:AD:DP:GQ:PL    1/1:0,47:47:12.02:129,12,0
21    42775555    rs462161    A    G    487.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.48;SNPEFF_AMINO_ACID_CHANGE=N22D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_42774561_42775563;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398632    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:520,42,0
21    42778386    rs367562    T    A    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
21    42779056    rs457870    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474368    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
21    42808015    rs468207    A    G    279.96    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.182;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=1.182;QD=23.33;ReadPosRankSum=-0.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413778    GT:AD:DP:GQ:PL    0/1:2,10:12:52.13:310,0,52
21    42809206    rs468646    A    C    406.65    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=2.765;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.411;QD=15.64;ReadPosRankSum=0.849;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413778    GT:AD:DP:GQ:PL    0/1:11,15:26:99:437,0,334
21    42811395    rs467558    C    T    102.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=17.01;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413778    GT:AD:DP:GQ:PL    0/1:2,4:6:63.18:132,0,63
21    42813029    rs364024    A    G    49.80    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.451;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=54.85;MQ0=0;MQRankSum=0.254;QD=3.56;ReadPosRankSum=-1.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417963    GT:AD:DP:GQ:PL    0/1:10,4:14:79.79:80,0,278
21    42817354    rs35870315    T    C    1326.20    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.751;DB;DP=114;Dels=0.0;FS=6.351;HRun=0;HaplotypeScore=1.9632;MQ=59.39;MQ0=0;MQRankSum=1.224;QD=11.63;ReadPosRankSum=1.685;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417963    GT:AD:DP:GQ:PL    0/1:61,53:114:99:1356,0,1760
21    42821113    rs2070229    T    C    1226.38    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=0.253;DB;DP=75;Dels=0.0;FS=4.663;HRun=0;HaplotypeScore=1.5115;MQ=59.38;MQ0=0;MQRankSum=0.586;QD=16.35;ReadPosRankSum=-0.619;SNPEFF_AMINO_ACID_CHANGE=R418;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_42821064_42821222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288383    GT:AD:DP:GQ:PL    0/1:31,44:75:99:1256,0,931
21    42821265    rs2280807    A    G    371.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.355;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.115;QD=13.26;ReadPosRankSum=0.666;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467510    GT:AD:DP:GQ:PL    0/1:14,14:28:99:401,0,505
21    42822983    rs1050080    G    A    1408.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=34.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486275    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1442,114,0
21    42823372    rs3737399    C    T    204.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486275    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:237,18,0
21    42823389    rs3737400    A    G    123.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=30.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486275    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
21    42823395    rs3737401    C    T    85.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486275    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
21    42824449    rs2072683    C    T    316.86    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.599;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=15.09;ReadPosRankSum=0.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486275    GT:AD:DP:GQ:PL    0/1:11,10:21:99:347,0,388
21    42824661    rs1050008    A    G    1934.10    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.626;DB;DP=172;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4105;MQ=59.73;MQ0=0;MQRankSum=0.0;QD=11.24;ReadPosRankSum=-1.571;SNPEFF_AMINO_ACID_CHANGE=A518;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_42824548_42824796;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000288383    GT:AD:DP:GQ:PL    0/1:99,73:172:99:1964,0,3138
21    42825044    rs2280808    C    T    43.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.41;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486275    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:73,0,26
21    42830399    .    A    ACAGT    366.38    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=4.494;DP=63;FS=0.0;HRun=0;HaplotypeScore=562.7893;IndelType=I;MQ=54.39;MQ0=0;MQRankSum=-2.469;QD=5.82;ReadPosRankSum=-1.732;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:45,14:63:99:405,0,2336
21    42840580    rs462321    T    C    67.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.31;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    0/1:3,3:6:97.85:98,0,109
21    42840595    rs462326    G    C    32.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.19;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    0/1:2,2:4:62.74:63,0,72
21    42842713    rs112132031    C    CCTAAGGCCTCGGG    1889.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=93.315;IndelType=I;MQ=38.28;MQ0=0;QD=145.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    1/1:5,6:13:36.12:1932,36,0
21    42843960    rs464431    A    G    821.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    1/1:0,23:23:66.18:855,66,0
21    42844052    rs458280    T    G    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=21.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
21    42844057    rs7364083    G    A    86.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=14.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    1/1:0,6:6:9.03:119,9,0
21    42845374    rs2298659    G    A    71.26    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=8.91;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=G219;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_42845373_42845423;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    0/1:3,5:8:24.09:101,0,24
21    42845383    rs17854725    A    G    101.93    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=9;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=11.33;ReadPosRankSum=0.922;SNPEFF_AMINO_ACID_CHANGE=I216;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_42845373_42845423;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    0/1:4,5:9:58.24:132,0,58
21    42845633    rs2298660    C    T    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
21    42848560    rs10540480    CAG    C    1120.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=95.0283;IndelType=D;MQ=62.55;MQ0=0;QD=44.8;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,25:25:72.24:1162,72,0
21    42850911    rs9974995    C    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:73,0,32
21    42850977    rs9974933    A    G    118.66    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=23.73;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,4:5:26.71:149,0,27
21    42851006    rs9975014    A    G    124.32    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=11.3;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,6:11:99:154,0,172
21    42852311    rs34561135    G    A    289.70    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.003;QD=22.28;ReadPosRankSum=-2.237;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,9:13:99:320,0,128
21    42852497    rs12329760    C    T    747.23    PASS    AB=0.219;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.097;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.593;QD=23.35;ReadPosRankSum=-0.593;SNPEFF_AMINO_ACID_CHANGE=V120M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_42852403_42852529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424093    GT:AD:DP:GQ:PL    0/1:7,25:32:99:777,0,204
21    42860307    rs422471    C    T    254.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.006;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.027;QD=9.79;ReadPosRankSum=-0.136;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463138    GT:AD:DP:GQ:PL    0/1:13,13:26:99:285,0,346
21    42860485    rs386416    G    C    70.18    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=8.77;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,146
21    42861181    rs2298664    G    C    39.72    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.24;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:70,0,30
21    42861332    rs429442    C    T    30.23    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.32;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455813    GT:AD:DP:GQ:PL    0/1:5,2:7:60.22:60,0,183
21    43160908    rs6586232    A    G    78.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330470    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
21    43161022    rs7276592    C    T    442.02    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.476;DB;DP=36;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.315;QD=12.28;ReadPosRankSum=-1.099;SNPEFF_AMINO_ACID_CHANGE=T714;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43160763_43162157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542057    GT:AD:DP:GQ:PL    0/1:18,17:36:99:472,0,505
21    43161357    rs3746891    T    C    1180.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.05;SNPEFF_AMINO_ACID_CHANGE=M603V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43160763_43162157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000542057    GT:AD:DP:GQ:PL    1/1:0,38:38:96.30:1213,96,0
21    43161805    rs2838113    G    A    1730.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.66;SNPEFF_AMINO_ACID_CHANGE=D255;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43161640_43162157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330470    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1764,129,0
21    43161877    rs3746893    C    T    831.95    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.032;DB;DP=67;Dels=0.0;FS=4.857;HRun=0;HaplotypeScore=1.6498;MQ=59.31;MQ0=0;MQRankSum=-0.12;QD=12.42;ReadPosRankSum=0.424;SNPEFF_AMINO_ACID_CHANGE=A231;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43161640_43162157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330470    GT:AD:DP:GQ:PL    0/1:38,29:67:99:862,0,1072
21    43162150    rs3746894    G    A    1673.01    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.712;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.51;MQ=59.29;MQ0=0;MQRankSum=0.819;QD=17.07;ReadPosRankSum=-0.149;SNPEFF_AMINO_ACID_CHANGE=G140;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43161640_43162157;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330470    GT:AD:DP:GQ:PL    0/1:42,55:98:99:1703,0,1181
21    43162200    rs3746895    T    C    901.61    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.822;DB;DP=55;Dels=0.0;FS=1.848;HRun=2;HaplotypeScore=1.4538;MQ=59.58;MQ0=0;MQRankSum=-0.017;QD=16.39;ReadPosRankSum=0.781;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:25,30:55:99:932,0,810
21    43164232    rs2277789    C    A    101.34    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.437;QD=7.8;ReadPosRankSum=-0.533;SNPEFF_AMINO_ACID_CHANGE=L272;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43164042_43164300;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542057    GT:AD:DP:GQ:PL    0/1:8,5:13:99:131,0,261
21    43164345    rs2277790    A    C    198.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.33;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:21.01:231,21,0
21    43165824    rs34366846    T    C    219.26    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=3.518;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=1.13;QD=9.53;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:15,8:23:99:249,0,486
21    43169357    rs2838114    C    G    522.91    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=2.543;DB;DP=47;Dels=0.0;FS=6.369;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.361;QD=11.13;ReadPosRankSum=-0.446;SNPEFF_AMINO_ACID_CHANGE=A147;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43169314_43169363;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIPK4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542057    GT:AD:DP:GQ:PL    0/1:27,20:47:99:553,0,789
21    43177124    rs59885183    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
21    43221483    rs3850706    A    G    1400.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=31.11;SNPEFF_AMINO_ACID_CHANGE=S1115P;SNPEFF_CODON_CHANGE=Tcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43220344_43221882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000447207    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1433,111,0
21    43221826    rs2236696    T    C    176.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.945;DB;DP=15;Dels=0.0;FS=2.187;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=1.002;QD=11.77;ReadPosRankSum=-0.412;SNPEFF_AMINO_ACID_CHANGE=L1000;SNPEFF_CODON_CHANGE=ttA/ttG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43220344_43221882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447207    GT:AD:DP:GQ:PL    0/1:9,6:15:99:206,0,277
21    43222779    rs2838128    A    G    296.65    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.217;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.811;QD=11.87;ReadPosRankSum=-1.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495217    GT:AD:DP:GQ:PL    0/1:13,12:25:99:327,0,449
21    43224683    rs2298687    A    G    43.54    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=8.71;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,3:5:35.74:74,0,36
21    43231271    rs28610063    A    G    96.80    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.312;QD=7.45;ReadPosRankSum=-0.54;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,4:13:99:127,0,256
21    43231296    rs28461265    A    T    115.17    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.03;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,4:5:27.18:145,0,27
21    43236252    rs28657504    A    G    471.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.43;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:504,39,0
21    43236284    rs4075968    G    A    100.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.731;QD=16.69;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:25.60:130,0,26
21    43236481    rs4075970    G    A    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    43239672    rs28604512    A    G    44.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380489    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
21    43239972    rs28477638    A    G    363.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.93;SNPEFF_AMINO_ACID_CHANGE=N1108;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43239938_43240057;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000269844    GT:AD:DP:GQ:PL    1/1:0,14:14:30.10:396,30,0
21    43241798    rs28485479    G    A    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380489    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
21    43242091    rs28648706    A    G    107.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=21.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380489    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:140,12,0
21    43242207    rs28360603    G    A    764.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=54.77;MQ0=0;QD=33.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380489    GT:AD:DP:GQ:PL    1/1:0,22:23:63.17:798,63,0
21    43243585    rs28545527    A    G    149.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=24.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489661    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:182,15,0
21    43246223    rs28559700    C    T    759.47    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.144;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.156;QD=31.64;ReadPosRankSum=1.445;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489661    GT:AD:DP:GQ:PL    1/1:1,23:24:26.99:792,27,0
21    43246495    rs28473463    T    G    404.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496124    GT:AD:DP:GQ:PL    1/1:0,12:13:33.11:437,33,0
21    43248418    rs28655031    A    G    150.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496124    GT:AD:DP:GQ:PL    1/1:0,10:10:18.04:183,18,0
21    43255359    rs2839391    G    C    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.18;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
21    43255727    rs2839393    T    G    206.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
21    43256172    rs17766525    T    C    63.60    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=6.36;ReadPosRankSum=0.546;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,3:10:93.60:94,0,258
21    43256252    rs4920098    C    T    647.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_AMINO_ACID_CHANGE=Q416;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43256222_43256316;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380489    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:680,51,0
21    43256438    rs4920101    T    A    218.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:251,18,0
21    43258000    rs8127003    T    C    1048.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.28;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1081,81,0
21    43258353    rs6586335    G    A    355.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:389,30,0
21    43277279    rs111805473    C    CT    2338.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.0;HRun=3;HaplotypeScore=129.2184;IndelType=I;MQ=60.34;MQ0=0;QD=38.98;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:4,56:60:99:2381,172,0
21    43287254    rs138404953    CCTCA    C    381.26    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=3.366;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=68.5084;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=-0.428;QD=25.42;ReadPosRankSum=1.096;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,8:15:99:420,0,467
21    43298846    rs143393748    C    T    262.20    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.877;DB;DP=23;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=-0.831;QD=11.4;ReadPosRankSum=-0.708;SNPEFF_AMINO_ACID_CHANGE=G124D;SNPEFF_CODON_CHANGE=gGt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43298804_43298969;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000269844    GT:AD:DP:GQ:PL    0/1:11,12:23:99:292,0,303
21    43298954    .    C    CG    204.49    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=4;HaplotypeScore=14.6052;IndelType=I;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_21_43298804_43298969;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PRDM15;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000269844    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
21    43309191    rs2839403    A    G    96.82    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=13.83;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP001619.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400449    GT:AD:DP:GQ:PL    0/1:3,4:7:99:127,0,103
21    43315057    rs2839411    C    T    145.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=12.09;ReadPosRankSum=0.529;SNPEFF_AMINO_ACID_CHANGE=R31H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43313829_43315235;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP001619.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400449    GT:AD:DP:GQ:PL    0/1:7,5:12:99:175,0,163
21    43325742    rs67049563    CA    C    284.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=22.5453;IndelType=D;MQ=65.74;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:326,27,0
21    43327856    rs3746906    A    G    651.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=28.32;SNPEFF_AMINO_ACID_CHANGE=F197;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43327769_43327893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2CD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329623    GT:AD:DP:GQ:PL    1/1:0,22:23:51.16:684,51,0
21    43328071    rs6586336    G    A    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2CD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490479    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
21    43329784    rs58643923    T    A    67.23    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=8.4;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2CD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490479    GT:AD:DP:GQ:PL    0/1:5,3:8:97.22:97,0,169
21    43334669    rs3746907    G    C    541.52    PASS    AB=0.28;AC=1;AF=0.50;AN=2;BaseQRankSum=0.826;DB;DP=25;Dels=0.0;FS=2.948;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.508;QD=21.66;ReadPosRankSum=0.699;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,18:25:99:572,0,177
21    43334896    rs3746908    A    G    739.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:772,57,0
21    43373728    .    G    A    70.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=7;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=0.0;QD=10.02;ReadPosRankSum=0.72;SNPEFF_AMINO_ACID_CHANGE=L10;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43373479_43373999;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C2CD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380486    GT:AD:DP:GQ:PL    0/1:3,4:7:11.66:100,0,12
21    43413553    rs871546    T    G    618.39    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.667;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;MQRankSum=-0.313;QD=12.37;ReadPosRankSum=-0.879;SNPEFF_AMINO_ACID_CHANGE=K218Q;SNPEFF_CODON_CHANGE=Aag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43406940_43414217;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF295;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310826    GT:AD:DP:GQ:PL    0/1:28,21:50:99:648,0,978
21    43413731    rs915837    C    T    2565.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.7;MQ0=0;MQRankSum=-0.501;QD=33.76;ReadPosRankSum=0.638;SNPEFF_AMINO_ACID_CHANGE=A158;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43406940_43414217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF295;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310826    GT:AD:DP:GQ:PL    1/1:1,75:76:99:2599,164,0
21    43495777    rs220284    G    A    72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=24.0;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:104,9,0
21    43496017    rs220285    C    G    2738.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=32.6;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2771,214,0
21    43496381    rs220286    G    T    980.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,29:29:78.25:1013,78,0
21    43504228    rs7278485    T    C    4506.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.508;MQ=59.23;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=P118;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43504194_43504355;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000408910    GT:AD:DP:GQ:PL    1/1:0,145:145:99:4507,367,0
21    43510427    rs67055914    T    C    268.53    PASS    AB=0.675;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.53;MQ0=0;MQRankSum=-0.52;QD=6.71;ReadPosRankSum=0.52;SNPEFF_AMINO_ACID_CHANGE=M43T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43510408_43510548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423139    GT:AD:DP:GQ:PL    0/1:27,13:40:99:299,0,825
21    43510437    rs17114359    A    C    303.93    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=2.578;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.57;MQ0=0;MQRankSum=-1.573;QD=7.07;ReadPosRankSum=0.595;SNPEFF_AMINO_ACID_CHANGE=N120H;SNPEFF_CODON_CHANGE=Aat/Cat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43510408_43510548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380462    GT:AD:DP:GQ:PL    0/1:30,13:43:99:334,0,884
21    43510514    rs2839464    C    G    691.76    PASS    AB=0.342;AC=1;AF=0.50;AN=2;BaseQRankSum=0.431;DB;DP=38;Dels=0.0;FS=1.461;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.492;QD=18.2;ReadPosRankSum=-0.277;SNPEFF_AMINO_ACID_CHANGE=P72R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43510408_43510548;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423139    GT:AD:DP:GQ:PL    0/1:13,25:38:99:722,0,395
21    43519032    rs220312    G    A    1839.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.604;DB;DP=128;Dels=0.0;FS=1.449;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=1.38;QD=14.37;ReadPosRankSum=-0.836;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329015    GT:AD:DP:GQ:PL    0/1:64,64:128:99:1870,0,1893
21    43519369    rs220313    G    T    63.52    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=11;Dels=0.0;FS=4.771;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=5.77;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329015    GT:AD:DP:GQ:PL    0/1:7,4:11:93.52:94,0,221
21    43519442    rs220314    C    T    75.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.92;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329015    GT:AD:DP:GQ:PL    0/1:1,3:4:29.19:106,0,29
21    43522349    rs220109    T    C    984.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.066;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=59.47;MQ0=0;MQRankSum=0.795;QD=11.32;ReadPosRankSum=0.207;SNPEFF_AMINO_ACID_CHANGE=S348;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43522276_43522388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400424    GT:AD:DP:GQ:PL    0/1:43,43:87:99:1015,0,1229
21    43523941    rs220111    C    A    1015.37    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=3.148;DB;DP=73;Dels=0.0;FS=1.955;HRun=1;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=-0.715;QD=13.91;ReadPosRankSum=-0.681;SNPEFF_AMINO_ACID_CHANGE=V98F;SNPEFF_CODON_CHANGE=Gtc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43522244_43524145;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf128;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329015    GT:AD:DP:GQ:PL    0/1:36,37:73:99:1045,0,1014
21    43528567    rs148304938    C    T    43.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.66;ReadPosRankSum=-0.736;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_21_43528406_43528644;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf128;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329015    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:74,0,23
21    43529515    rs220120    G    C    262.19    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.599;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.64;MQ0=0;MQRankSum=-0.929;QD=20.17;ReadPosRankSum=-1.239;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,9:13:99:292,0,123
21    43529548    rs35742122    A    AG    605.12    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.039;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=133.8336;IndelType=I;MQ=60.74;MQ0=0;MQRankSum=-0.117;QD=28.82;ReadPosRankSum=0.35;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,15:21:99:644,0,151
21    43531403    rs220127    C    G    60.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=49.17;MQ0=0;MQRankSum=0.988;QD=8.69;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=R619G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43530990_43531820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400427    GT:AD:DP:GQ:PL    0/1:4,3:7:90.82:91,0,91
21    43531553    rs220128    A    C    428.52    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.168;DB;DP=38;Dels=0.0;FS=1.293;HRun=1;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.103;QD=11.28;ReadPosRankSum=-1.286;SNPEFF_AMINO_ACID_CHANGE=T669P;SNPEFF_CODON_CHANGE=Act/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43530990_43531820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400427    GT:AD:DP:GQ:PL    0/1:22,16:38:99:459,0,675
21    43531632    rs220129    T    C    637.53    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.279;DB;DP=45;Dels=0.0;FS=2.498;HRun=1;HaplotypeScore=0.9789;MQ=59.49;MQ0=0;MQRankSum=0.047;QD=14.17;ReadPosRankSum=-0.305;SNPEFF_AMINO_ACID_CHANGE=I567T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43531616_43531820;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400424    GT:AD:DP:GQ:PL    0/1:21,24:45:99:668,0,632
21    43531848    rs220131    C    T    214.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.644;DB;DP=18;Dels=0.0;FS=2.392;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.666;QD=11.9;ReadPosRankSum=2.177;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,8:18:99:244,0,321
21    43532981    rs220136    A    C    392.41    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.449;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.16;QD=10.9;ReadPosRankSum=-0.578;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,15:36:99:422,0,697
21    43533094    rs220137    A    G    528.35    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.678;DB;DP=50;Dels=0.0;FS=1.239;HRun=1;HaplotypeScore=1.8583;MQ=59.07;MQ0=0;MQRankSum=-0.894;QD=10.57;ReadPosRankSum=0.09;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,23:50:99:558,0,931
21    43539523    rs220147    C    T    233.56    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=4.096;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.11;MQ0=0;MQRankSum=1.294;QD=8.98;ReadPosRankSum=1.671;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475047    GT:AD:DP:GQ:PL    0/1:17,9:26:99:264,0,443
21    43541342    rs220150    C    T    1162.39    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=4.111;DB;DP=63;Dels=0.0;FS=3.908;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=1.138;QD=18.45;ReadPosRankSum=0.803;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:26,37:63:99:1192,0,585
21    43546705    rs220157    T    C    95.53    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.11;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484174    GT:AD:DP:GQ:PL    0/1:1,4:5:15.55:125,0,16
21    43547788    rs220158    T    C    1215.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=32.85;SNPEFF_AMINO_ACID_CHANGE=P1107;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43547782_43547941;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400424    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1248,96,0
21    43549794    rs7275646    C    T    686.44    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.594;QD=18.06;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UMODL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434156    GT:AD:DP:GQ:PL    0/1:17,21:38:99:716,0,595
21    43704650    rs2234719    C    T    371.69    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3322;MQ=58.69;MQ0=0;MQRankSum=-0.774;QD=11.62;ReadPosRankSum=0.02;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:17,15:32:99:402,0,493
21    43726618    rs225435    A    G    120.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
21    43766560    rs225334    G    A    661.97    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=2.685;DB;DP=43;Dels=0.0;FS=3.405;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.692;QD=15.39;ReadPosRankSum=0.741;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:21,22:43:99:692,0,668
21    43767364    rs225335    G    A    42.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.02;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:72,0,32
21    43767414    rs225336    A    T    106.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.638;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=2.017;QD=13.32;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,4:8:99:137,0,144
21    43767500    rs225337    T    A    350.26    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.931;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8801;MQ=59.11;MQ0=0;MQRankSum=0.245;QD=13.47;ReadPosRankSum=-0.408;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,14:26:99:380,0,428
21    43786512    rs225358    C    T    90.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.633;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.741;QD=9.06;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,200
21    43796913    rs1078272    T    A    126.59    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.256;QD=9.74;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,5:13:99:157,0,290
21    43803412    rs8129105    T    C    150.03    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.067;QD=18.75;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,6:8:50.60:180,0,51
21    43805637    rs2839501    C    T    873.32    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.272;DB;DP=76;Dels=0.0;FS=12.25;HRun=1;HaplotypeScore=0.0;MQ=59.7;MQ0=0;MQRankSum=0.507;QD=11.49;ReadPosRankSum=-1.205;SNPEFF_AMINO_ACID_CHANGE=V149;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43805518_43805643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMPRSS3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398405    GT:AD:DP:GQ:PL    0/1:45,31:76:99:903,0,1402
21    43805656    rs8130564    T    C    575.09    PASS    AB=0.646;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.755;DB;DP=65;Dels=0.0;FS=3.913;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.173;QD=8.85;ReadPosRankSum=-0.953;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:42,23:65:99:605,0,1509
21    43808627    rs35227181    C    T    1291.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.331;DB;DP=92;Dels=0.0;FS=2.824;HRun=0;HaplotypeScore=2.4148;MQ=59.75;MQ0=0;MQRankSum=-1.433;QD=14.04;ReadPosRankSum=-1.206;SNPEFF_AMINO_ACID_CHANGE=G109S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43808512_43808635;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMPRSS3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398405    GT:AD:DP:GQ:PL    0/1:46,46:92:99:1322,0,1372
21    43808876    rs56359750    AC    A    85.38    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=12;FS=2.398;HRun=6;HaplotypeScore=93.0919;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=7.11;ReadPosRankSum=1.635;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,5:12:99:124,0,218
21    43808927    rs186531    A    G    461.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.5;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:494,39,0
21    43808964    rs225432    T    A    373.75    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.422;DB;DP=25;Dels=0.0;FS=3.128;HRun=0;HaplotypeScore=0.8667;MQ=59.07;MQ0=0;MQRankSum=-0.301;QD=14.95;ReadPosRankSum=-2.108;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,14:25:99:404,0,390
21    43826344    rs3746923    C    T    106.89    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.256;QD=8.22;ReadPosRankSum=-0.271;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,5:13:99:137,0,263
21    43826391    rs3746924    T    C    178.18    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=17;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-0.741;QD=10.48;ReadPosRankSum=0.635;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,10:17:99:208,0,243
21    43829758    rs11702374    G    A    603.91    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.611;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.724;QD=15.48;ReadPosRankSum=-0.429;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:17,22:39:99:634,0,484
21    43836390    rs9976767    A    G    152.69    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=25.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,5:6:19.74:183,0,20
21    43846729    rs2839509    A    G    464.76    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.259;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.088;QD=19.37;ReadPosRankSum=1.2;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,14:24:99:495,0,336
21    43852037    rs12482947    T    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    43852232    rs13052676    C    T    324.21    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=14;Dels=0.0;FS=11.553;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.934;QD=23.16;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=S359;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43852212_43852311;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291535    GT:AD:DP:GQ:PL    0/1:3,11:14:65.54:354,0,66
21    43862466    rs2254368    G    A    392.73    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=2.872;DB;DP=29;Dels=0.0;FS=2.176;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.855;QD=13.54;ReadPosRankSum=1.118;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,13:29:99:423,0,437
21    43863521    rs868092    A    G    322.07    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.34;QD=20.13;ReadPosRankSum=0.34;SNPEFF_AMINO_ACID_CHANGE=P539;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43863422_43863528;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBASH3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291535    GT:AD:DP:GQ:PL    0/1:5,11:16:89.74:352,0,90
21    43864519    rs4920104    G    A    386.94    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=3.887;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.725;QD=12.9;ReadPosRankSum=-1.06;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:16,14:30:99:417,0,452
21    43864605    rs35223581    G    T    1009.32    PASS    AB=0.493;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.789;DB;DP=75;Dels=0.0;FS=2.24;HRun=1;HaplotypeScore=0.734;MQ=59.44;MQ0=0;MQRankSum=-0.662;QD=13.46;ReadPosRankSum=-0.758;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:37,38:75:99:1039,0,1123
21    43867059    rs3827232    C    T    440.43    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.946;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.412;QD=15.73;ReadPosRankSum=-0.218;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,14:28:99:470,0,447
21    43892775    rs11203205    G    A    35.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=5.99;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RSPH1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398352    GT:AD:DP:GQ:PL    0/1:4,2:6:65.95:66,0,114
21    43897194    rs59317074    A    G    162.67    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=1.9866;MQ=43.93;MQ0=0;MQRankSum=1.179;QD=18.07;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,7:9:31.28:193,0,31
21    43897211    rs13048879    C    A    174.18    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.898;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.67;MQ0=0;MQRankSum=-0.48;QD=17.42;ReadPosRankSum=0.48;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,8:10:38.63:204,0,39
21    43897221    .    T    C    42.98    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.52;MQ0=0;MQRankSum=1.106;QD=3.91;ReadPosRankSum=-1.931;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:8,3:11:72.97:73,0,198
21    43897235    rs11700635    A    G    191.38    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.611;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=3.5162;MQ=42.6;MQ0=2;MQRankSum=-0.967;QD=13.67;ReadPosRankSum=1.396;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,11:14:51.17:221,0,51
21    43897241    rs11702109    C    T    136.47    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5162;MQ=42.6;MQ0=2;MQRankSum=-1.239;QD=9.75;ReadPosRankSum=1.599;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,9:14:99:166,0,130
21    43897276    rs56825875    A    G    144.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=46.66;MQ0=2;QD=20.66;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,6:7:15.04:177,15,0
21    43897303    rs190105066    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.43;MQ0=2;QD=12.35;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,2:4:6.02:81,6,0
21    43897355    rs11702140    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.02;MQ0=0;QD=8.01;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:6.02:79,6,0
21    43897771    rs7281187    A    G    117.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.46;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
21    43902956    rs1153362    T    C    88.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.44;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
21    43905887    rs2839536    C    T    1766.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_AMINO_ACID_CHANGE=A131;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43905779_43905914;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RSPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291536    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1800,138,0
21    43906351    rs2839537    G    C    364.65    PASS    AB=0.083;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.579;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=30.39;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,11:12:5.65:394,0,6
21    43913370    rs9979100    G    A    235.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.59;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:268,21,0
21    43913378    rs7277667    A    G    201.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:235,18,0
21    43916339    rs1573413    G    A    853.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=31.62;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_21_43916243_43916464;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RSPH1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291536    GT:AD:DP:GQ:PL    1/1:0,27:27:69.22:887,69,0
21    43938673    rs4919990    T    C    646.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398343    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:679,51,0
21    43945703    rs2839539    C    T    114.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:147,12,0
21    43955427    rs228056    A    G    216.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:249,21,0
21    43959770    rs228063    A    G    803.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=28.68;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,28:28:63.20:836,63,0
21    43959979    rs228064    A    G    81.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.31;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
21    43960009    rs228065    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
21    43963401    rs228074    T    C    321.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
21    43963759    rs228075    A    G    238.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.12;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:272,21,0
21    43966971    rs228081    T    C    93.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
21    43967126    rs228082    G    A    365.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.49;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:399,30,0
21    43984126    rs7282730    C    T    127.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.8;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
21    43985016    rs915874    G    A    154.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
21    43985955    rs228104    G    A    840.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_AMINO_ACID_CHANGE=V414I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_43985937_43985985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352133    GT:AD:DP:GQ:PL    1/1:0,26:26:63.21:873,63,0
21    43988437    rs7280392    G    A    262.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.15;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:295,21,0
21    43994712    rs423535    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
21    43999983    rs453592    T    C    209.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC37A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496416    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:242,21,0
21    44107960    rs2839573    T    A    303.61    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.595;DB;DP=20;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=15.18;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,11:20:99:334,0,274
21    44107989    rs2839574    A    G    505.16    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.259;DB;DP=31;Dels=0.0;FS=2.277;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.764;QD=16.3;ReadPosRankSum=-0.392;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,20:31:99:535,0,274
21    44118958    rs1515755    T    A    141.71    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.867;DB;DP=19;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.289;QD=7.46;ReadPosRankSum=-0.784;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,8:19:99:172,0,369
21    44151733    .    G    A    102.67    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=17.11;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:47.85:133,0,48
21    44152149    rs2269153    G    A    336.81    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=0.558;DB;DP=27;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=1.334;QD=12.47;ReadPosRankSum=-0.607;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,13:27:99:367,0,378
21    44163839    rs6586344    A    G    125.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.92;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:158,12,0
21    44180916    rs1547379    G    A    1087.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=31.97;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1120,84,0
21    44181908    rs2269165    T    C    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
21    44182135    rs2269168    C    G    362.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=21.35;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,16:17:36.07:396,36,0
21    44188249    rs68104891    GC    G    553.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=3;HaplotypeScore=46.3812;IndelType=D;MQ=60.63;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,16:17:48.15:595,48,0
21    44188485    rs2284977    T    A    133.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
21    44188956    rs4920149    C    T    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466472    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
21    44189166    rs1045382    T    C    1181.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=P337;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44189137_44189265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398227    GT:AD:DP:GQ:PL    1/1:0,38:38:96.29:1214,96,0
21    44189172    rs3087994    A    C    1300.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.38;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=A339;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44189137_44189265;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE9A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398227    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1334,102,0
21    44189387    rs55990449    G    A    93.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=23.3;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PDE9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466472    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:125,9,0
21    44270229    rs6586250    C    T    1230.02    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=5.205;DB;DP=98;Dels=0.0;FS=1.025;HRun=0;HaplotypeScore=1.9981;MQ=59.76;MQ0=0;MQRankSum=0.633;QD=12.55;ReadPosRankSum=-0.156;SNPEFF_AMINO_ACID_CHANGE=R390Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44270151_44270352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330317    GT:AD:DP:GQ:PL    0/1:53,45:98:99:1260,0,1461
21    44270402    rs6586251    C    G    142.46    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.977;QD=11.87;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479429    GT:AD:DP:GQ:PL    0/1:7,5:12:99:172,0,212
21    44274845    rs1107831    A    G    189.14    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5644;MQ=57.66;MQ0=0;MQRankSum=1.036;QD=18.91;ReadPosRankSum=2.072;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463902    GT:AD:DP:GQ:PL    0/1:4,6:10:74.56:219,0,75
21    44293744    rs2248490    C    G    517.49    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.205;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.64;MQ0=0;MQRankSum=0.448;QD=9.95;ReadPosRankSum=-0.746;SNPEFF_AMINO_ACID_CHANGE=K71N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44293661_44293801;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WDR4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330317    GT:AD:DP:GQ:PL    0/1:31,21:52:99:547,0,1034
21    44296934    rs7279447    T    A    117.95    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.953;QD=7.37;ReadPosRankSum=1.588;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,9:16:99:148,0,233
21    44296960    rs11700660    C    T    35.94    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=5.13;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,2:7:65.93:66,0,142
21    44296992    rs7283064    G    A    36.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.358;QD=6.12;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,3:6:66.72:67,0,111
21    44317003    rs9974287    T    G    416.95    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.11;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-1.574;QD=9.93;ReadPosRankSum=-1.272;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,20:42:99:447,0,663
21    44317381    rs2839601    T    C    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
21    44323590    rs4148973    T    G    2041.90    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.961;DB;DP=160;Dels=0.0;FS=1.259;HRun=0;HaplotypeScore=2.6989;MQ=59.74;MQ0=0;MQRankSum=-0.011;QD=12.76;ReadPosRankSum=-1.474;SNPEFF_AMINO_ACID_CHANGE=S156;SNPEFF_CODON_CHANGE=tcT/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44323292_44324386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFV3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354250    GT:AD:DP:GQ:PL    0/1:85,75:160:99:2072,0,2556
21    44324365    rs10595    G    A    120.20    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=13.36;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=D415N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44323292_44324386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFV3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354250    GT:AD:DP:GQ:PL    0/1:4,5:9:99:150,0,140
21    44327015    rs2839604    G    A    916.92    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.021;DB;DP=87;Dels=0.0;FS=3.101;HRun=1;HaplotypeScore=4.2322;MQ=60.0;MQ0=0;MQRankSum=-0.009;QD=10.54;ReadPosRankSum=0.799;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NDUFV3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460740    GT:AD:DP:GQ:PL    0/1:53,34:87:99:947,0,1533
21    44424689    rs113124275    G    GA    248.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=7;HaplotypeScore=16.6144;IndelType=I;MQ=60.0;MQ0=0;QD=27.56;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,8:9:24.07:290,24,0
21    44430325    rs234781    T    C    749.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=T114;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44430163_44430334;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKNOX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291547    GT:AD:DP:GQ:PL    1/1:0,22:22:66.20:783,66,0
21    44438157    rs67842024    C    CAAAAA    485.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=23;HaplotypeScore=310.0338;IndelType=I;MQ=39.68;MQ0=0;QD=20.24;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:11,7:24:53.58:528,54,0
21    44448718    rs2839627    C    T    970.68    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.172;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6828;MQ=59.56;MQ0=0;MQRankSum=-0.135;QD=18.31;ReadPosRankSum=-1.182;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,31:53:99:1001,0,781
21    44448763    rs170916    G    C    1728.32    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.768;DB;DP=138;Dels=0.0;FS=3.2;HRun=0;HaplotypeScore=0.7887;MQ=59.67;MQ0=0;MQRankSum=-0.576;QD=12.52;ReadPosRankSum=-0.426;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:76,62:138:99:1758,0,2605
21    44448775    rs234728    G    A    1936.37    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.476;DB;DP=155;Dels=0.0;FS=3.653;HRun=2;HaplotypeScore=2.8921;MQ=59.7;MQ0=0;MQRankSum=0.44;QD=12.49;ReadPosRankSum=-0.777;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:82,73:155:99:1966,0,2801
21    44449095    rs234729    G    A    168.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PKNOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474336    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
21    44473867    rs1051319    G    C    80.84    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.17;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462349    GT:AD:DP:GQ:PL    0/1:2,3:5:60.54:111,0,61
21    44478393    rs6586281    G    A    366.25    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.474;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.212;QD=21.54;ReadPosRankSum=0.791;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486098    GT:AD:DP:GQ:PL    0/1:5,12:17:99:396,0,109
21    44482936    rs1789953    C    T    112.66    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.754;QD=16.09;ReadPosRankSum=-0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441030    GT:AD:DP:GQ:PL    0/1:3,4:7:85.91:143,0,86
21    44483276    rs55767206    C    T    143.79    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=15.98;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441030    GT:AD:DP:GQ:PL    0/1:4,5:9:90.01:174,0,90
21    44485350    rs234706    G    A    526.66    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.194;DB;DP=42;Dels=0.0;FS=7.182;HRun=0;HaplotypeScore=0.7887;MQ=59.45;MQ0=0;MQRankSum=-0.476;QD=12.54;ReadPosRankSum=0.285;SNPEFF_AMINO_ACID_CHANGE=Y145;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44485313_44485382;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544202    GT:AD:DP:GQ:PL    0/1:24,18:42:99:557,0,566
21    44486324    rs234708    T    C    208.34    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=23;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.77;MQ0=0;MQRankSum=0.152;QD=9.06;ReadPosRankSum=-0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465732    GT:AD:DP:GQ:PL    0/1:13,10:23:99:238,0,338
21    44488755    rs5844149    G    GA    139.40    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.498;DB;DP=33;FS=0.0;HRun=14;HaplotypeScore=210.7677;IndelType=I;MQ=55.09;MQ0=0;MQRankSum=-0.029;QD=4.22;ReadPosRankSum=-1.2;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,10:33:99:178,0,173
21    44514488    rs3188479    G    A    776.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=38.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=U2AF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463599    GT:AD:DP:GQ:PL    1/1:0,20:20:60.20:809,60,0
21    44514969    .    A    ATG    574.69    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=0;HaplotypeScore=30.4431;IndelType=I;MQ=61.78;MQ0=0;QD=47.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=U2AF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463599    GT:AD:DP:GQ:PL    1/1:1,11:12:33.11:617,33,0
21    44515504    rs4920040    T    C    967.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=U2AF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463599    GT:AD:DP:GQ:PL    1/1:0,30:30:78.25:1001,78,0
21    44515685    rs2839634    T    C    1073.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=35.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=U2AF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463599    GT:AD:DP:GQ:PL    1/1:1,29:30:81.27:1106,81,0
21    44527361    rs4920045    G    T    47.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.6;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
21    44527669    rs17115876    T    G    117.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.31;MQ0=0;QD=14.73;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,8:8:12.04:150,12,0
21    44589215    rs872331    C    T    1827.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.594;QD=35.83;ReadPosRankSum=1.663;SNPEFF_AMINO_ACID_CHANGE=D2;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44589118_44589398;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYAA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291554    GT:AD:DP:GQ:PL    1/1:1,50:51:99:1860,104,0
21    44837082    rs229344    A    T    33.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=11.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    1/1:0,3:3:6:64,6,0
21    44837359    rs2838300    G    A    129.42    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-0.742;QD=18.49;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    0/1:1,6:7:21.26:159,0,21
21    44837555    rs430554    G    A    134.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=19.23;SNPEFF_AMINO_ACID_CHANGE=A615V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44837423_44837654;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270162    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:167,15,0
21    44837968    rs77684246    G    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
21    44838081    rs2838301    A    G    428.07    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.739;DB;DP=27;Dels=0.0;FS=4.483;HRun=1;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-1.258;QD=15.85;ReadPosRankSum=0.913;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    0/1:11,16:27:99:458,0,336
21    44839153    rs2838302    A    G    61.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=10.25;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    0/1:3,3:6:91.49:91,0,104
21    44839654    rs229346    A    G    149.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
21    44840382    rs657978    G    C    50.75    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.794;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=1.083;QD=3.38;ReadPosRankSum=2.526;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    0/1:12,3:15:80.75:81,0,351
21    44840386    rs117253106    C    T    42.56    PASS    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=0.673;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-0.269;QD=2.66;ReadPosRankSum=2.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    0/1:13,3:16:72.56:73,0,313
21    44840873    rs75559179    G    A    82.72    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=11.82;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478426    GT:AD:DP:GQ:PL    0/1:3,4:7:62.85:113,0,63
21    44841036    rs2006191    A    G    258.83    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.266;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=0.551;QD=16.18;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,11:16:99:289,0,128
21    44841052    rs2006112    T    C    198.05    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.53;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.55;MQ0=0;MQRankSum=-1.709;QD=12.38;ReadPosRankSum=-0.295;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,9:16:99:228,0,179
21    44841365    rs58732746    A    G    178.03    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.049;DB;DP=17;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=10.47;ReadPosRankSum=-0.83;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,7:17:99:208,0,314
21    44841804    rs56265008    G    A    267.56    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.523;DB;DP=21;Dels=0.0;FS=2.077;HRun=0;HaplotypeScore=0.9665;MQ=58.89;MQ0=0;MQRankSum=0.178;QD=12.74;ReadPosRankSum=0.178;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,9:21:99:298,0,277
21    44841819    rs57684950    G    C    318.59    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=1.854;DB;DP=25;Dels=0.0;FS=7.401;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.463;QD=12.74;ReadPosRankSum=-0.406;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:14,11:25:99:349,0,407
21    44841945    rs59151119    C    T    119.19    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.482;DB;DP=18;Dels=0.0;FS=4.523;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.234;QD=6.62;ReadPosRankSum=0.609;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,6:18:99:149,0,344
21    44846016    rs3746951    C    T    258.19    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.752;DB;DP=12;Dels=0.0;FS=8.195;HRun=0;HaplotypeScore=1.9761;MQ=58.05;MQ0=0;MQRankSum=1.611;QD=21.52;ReadPosRankSum=0.107;SNPEFF_AMINO_ACID_CHANGE=G15S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_44845903_44846072;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SIK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000270162    GT:AD:DP:GQ:PL    0/1:2,10:12:52.78:288,0,53
21    44895771    rs10540780    GAC    G    347.51    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=1.488;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=64.2566;IndelType=D;MQ=62.65;MQ0=0;MQRankSum=0.248;QD=21.72;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,12:16:5.10:386,0,5
21    44984951    rs116993335    A    G    126.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
21    44985202    rs9637217    G    A    1071.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.67;MQ0=7;QD=26.8;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1105,99,0
21    44985272    rs9637218    C    T    1930.43    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=31.21;MQ0=9;QD=24.44;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,77:78:99:1963,165,0
21    44985473    rs2838315    C    T    1846.66    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=39.55;MQ0=6;QD=27.16;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,66:68:99:1880,144,0
21    45012353    rs1454650    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
21    45053011    rs7277539    A    G    465.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:13:39.10:499,39,0
21    45064296    rs2246602    C    A    1231.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=32.4;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1264,99,0
21    45076373    rs2838340    A    G    642.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,18:18:51.17:675,51,0
21    45076443    rs2838341    A    G    1784.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.893;DB;DP=54;Dels=0.0;FS=4.258;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.076;QD=33.04;ReadPosRankSum=0.481;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:2,52:54:93.69:1817,94,0
21    45089877    rs2838344    G    A    959.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.14;MQ0=0;QD=35.55;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:993,75,0
21    45092095    rs11909064    G    C    1777.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=39.5;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1811,135,0
21    45092257    rs2251253    T    A    3362.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3362,253,0
21    45096206    rs2155722    G    A    1979.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9916;MQ=59.42;MQ0=0;QD=30.92;SNPEFF_AMINO_ACID_CHANGE=A201;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45096153_45096217;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340648    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2012,150,0
21    45107285    rs2838348    C    G    1206.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.639;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.983;QD=32.61;ReadPosRankSum=-1.171;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,36:37:56.31:1240,56,0
21    45107518    rs7279959    A    G    1037.20    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.612;QD=30.51;ReadPosRankSum=-1.325;SNPEFF_AMINO_ACID_CHANGE=P421;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45107397_45108121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340648    GT:AD:DP:GQ:PL    1/1:1,33:34:49.61:1070,50,0
21    45107562    rs9306160    T    C    944.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.73;SNPEFF_AMINO_ACID_CHANGE=L436P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45107397_45108121;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000340648    GT:AD:DP:GQ:PL    1/1:0,28:28:78.21:977,78,0
21    45112939    rs2236667    A    G    146.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.34;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:179,15,0
21    45152500    rs2276528    G    A    2047.36    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=1.426;DB;DP=158;Dels=0.0;FS=0.611;HRun=0;HaplotypeScore=2.3894;MQ=59.85;MQ0=0;MQRankSum=-1.053;QD=12.96;ReadPosRankSum=-1.507;SNPEFF_AMINO_ACID_CHANGE=R81H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45152020_45152528;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXK;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327574    GT:AD:DP:GQ:PL    0/1:84,74:158:99:2077,0,2376
21    45154087    .    C    T    201.39    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=1.656;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=15.49;ReadPosRankSum=0.935;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,7:13:99:231,0,165
21    45154144    rs2299806    C    T    74.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.6;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:1,3:4:9.02:106,9,0
21    45168709    rs113597750    T    C    54.69    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.166;DB;DP=10;Dels=0.0;FS=5.229;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=5.47;ReadPosRankSum=-2.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470029    GT:AD:DP:GQ:PL    0/1:7,3:10:84.68:85,0,252
21    45169005    rs9974827    A    G    193.60    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.984;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.405;QD=12.91;ReadPosRankSum=-0.405;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470029    GT:AD:DP:GQ:PL    0/1:8,7:15:99:224,0,280
21    45170285    rs1106797    A    G    114.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=49.96;MQ0=0;QD=22.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472777    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:147,12,0
21    45170580    rs1079268    A    G    79.69    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.92;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472777    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:110,0,30
21    45172379    rs8134507    G    A    262.25    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=0.453;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.181;QD=14.57;ReadPosRankSum=-0.996;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,11:18:99:292,0,193
21    45175335    rs78159912    G    A    46.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
21    45175571    rs8128639    C    A    471.21    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.705;DB;DP=37;Dels=0.0;FS=1.713;HRun=0;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=0.902;QD=12.74;ReadPosRankSum=0.104;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398085    GT:AD:DP:GQ:PL    0/1:18,19:37:99:501,0,441
21    45175958    rs7527    T    C    137.39    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=15.27;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDXK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398085    GT:AD:DP:GQ:PL    0/1:3,6:9:65.94:167,0,66
21    45215046    rs2838371    T    C    740.60    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.44;DB;DP=55;Dels=0.0;FS=1.079;HRun=0;HaplotypeScore=0.8321;MQ=59.24;MQ0=0;MQRankSum=-1.405;QD=13.47;ReadPosRankSum=0.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473988    GT:AD:DP:GQ:PL    0/1:25,29:55:99:771,0,771
21    45215055    rs2838373    C    G    751.17    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.594;DB;DP=57;Dels=0.0;FS=1.05;HRun=0;HaplotypeScore=2.8318;MQ=59.27;MQ0=0;MQRankSum=1.514;QD=13.18;ReadPosRankSum=-0.152;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473988    GT:AD:DP:GQ:PL    0/1:26,31:57:99:781,0,800
21    45217559    rs2838378    T    C    781.90    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.37;DB;DP=49;Dels=0.0;FS=1.241;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.519;QD=15.96;ReadPosRankSum=0.641;SNPEFF_AMINO_ACID_CHANGE=I200;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45217512_45217576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400387    GT:AD:DP:GQ:PL    0/1:20,29:49:99:812,0,606
21    45217753    rs2070538    C    T    206.66    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.32;QD=9.39;ReadPosRankSum=1.599;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475534    GT:AD:DP:GQ:PL    0/1:13,9:22:99:237,0,343
21    45217929    rs2838379    T    C    67.63    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.477;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=-1.212;QD=3.76;ReadPosRankSum=1.318;SNPEFF_AMINO_ACID_CHANGE=G253;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45217788_45217981;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400387    GT:AD:DP:GQ:PL    0/1:12,6:18:97.62:98,0,422
21    45219524    rs4566449    T    C    114.47    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=14.31;ReadPosRankSum=1.495;SNPEFF_AMINO_ACID_CHANGE=V295;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45219451_45219530;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400387    GT:AD:DP:GQ:PL    0/1:3,5:8:65.93:144,0,66
21    45220483    rs915770    A    G    387.79    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.382;DB;DP=34;Dels=0.0;FS=5.093;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=11.41;ReadPosRankSum=0.892;SNPEFF_AMINO_ACID_CHANGE=K326R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45220398_45220495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400387    GT:AD:DP:GQ:PL    0/1:20,14:34:99:418,0,625
21    45220570    rs731935    T    C    49.91    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.464;QD=3.12;ReadPosRankSum=-1.681;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475534    GT:AD:DP:GQ:PL    0/1:10,6:16:79.91:80,0,364
21    45220787    rs2329576    A    G    816.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475534    GT:AD:DP:GQ:PL    1/1:0,24:24:66.19:850,66,0
21    45232322    rs9985006    T    C    104.06    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.38;DB;DP=16;Dels=0.0;FS=2.158;HRun=2;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=-0.38;QD=6.5;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:10,6:16:99:134,0,260
21    45398022    .    G    A    91.05    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.831;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.135;QD=7.59;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,5:12:99:121,0,205
21    45401223    rs4819356    C    T    37.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.85;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
21    45514141    rs11287102    TG    T    995.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.0;HRun=5;HaplotypeScore=362.0186;IndelType=D;MQ=60.6;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:3,31:34:93.25:1038,93,0
21    45514149    rs9941801    A    G    834.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.63;MQ0=0;QD=26.09;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,32:32:81.18:868,81,0
21    45514168    rs4819371    C    T    905.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,27:27:69.23:938,69,0
21    45514188    rs4818879    A    G    789.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;QD=34.34;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,23:23:66.20:823,66,0
21    45527291    rs11550376    G    A    182.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=22.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291574    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:215,15,0
21    45528919    rs2020945    G    A    860.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8245;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=D25N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45528865_45528977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291576    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:893,66,0
21    45529115    rs2020946    C    G    47.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291574    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
21    45534032    rs2243999    C    T    550.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.7;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:584,45,0
21    45534807    rs2776369    C    G    257.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.74;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
21    45534814    rs2855651    T    C    158.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:191,18,0
21    45538647    rs756553    T    C    939.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=I328;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45538644_45538714;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291576    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:972,72,0
21    45538725    rs756554    C    A    994.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456705    GT:AD:DP:GQ:PL    1/1:0,30:30:81.23:1028,81,0
21    45538782    rs756555    A    T    667.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456705    GT:AD:DP:GQ:PL    1/1:0,18:18:54.15:701,54,0
21    45539240    rs2855652    G    C    110.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456705    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:143,12,0
21    45540143    rs2855653    G    A    485.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456705    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:518,39,0
21    45540207    rs2850157    C    T    1159.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456705    GT:AD:DP:GQ:PL    1/1:0,33:33:93.28:1193,93,0
21    45540919    rs2071143    A    G    729.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_AMINO_ACID_CHANGE=T524;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45540833_45540983;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291576    GT:AD:DP:GQ:PL    1/1:0,23:23:60.17:762,60,0
21    45544594    rs2187313    T    C    855.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;QD=29.49;SNPEFF_AMINO_ACID_CHANGE=L651;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45544461_45544608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291576    GT:AD:DP:GQ:PL    1/1:0,29:29:69.21:888,69,0
21    45544786    rs7282324    A    G    79.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.43;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:111,9,0
21    45550460    rs11311220    TC    T    822.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=4;HaplotypeScore=64.9763;IndelType=D;MQ=59.94;MQ0=0;QD=34.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PWP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471490    GT:AD:DP:GQ:PL    1/1:0,24:24:72.22:864,72,0
21    45553596    rs968714    T    C    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_AMINO_ACID_CHANGE=V6A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45553487_45553720;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf33;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291577    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
21    45556186    rs2071135    A    G    42.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.27;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
21    45560331    rs2838492    C    G    366.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470545    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:400,30,0
21    45560399    rs1984356    G    C    39.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470545    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:70,6,0
21    45561039    rs1059813    T    C    1202.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470545    GT:AD:DP:GQ:PL    1/1:0,37:37:90.30:1235,90,0
21    45564575    rs2838496    G    C    94.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP001055.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433711    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:127,9,0
21    45564711    rs34002183    C    T    300.11    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.58;DB;DP=29;Dels=0.0;FS=3.785;HRun=0;HaplotypeScore=1.5774;MQ=60.0;MQ0=0;MQRankSum=-1.37;QD=10.35;ReadPosRankSum=-0.534;SNPEFF_AMINO_ACID_CHANGE=H198;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45564703_45565605;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf33;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348499    GT:AD:DP:GQ:PL    0/1:16,13:29:99:330,0,564
21    45565473    rs7676    C    T    242.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=30.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP001055.7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433711    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:275,21,0
21    45642817    rs72250288    TA    T    143.70    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.466;DB;DP=14;FS=0.0;HRun=11;HaplotypeScore=45.8866;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=10.26;ReadPosRankSum=-1.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICOSLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344330    GT:AD:DP:GQ:PL    0/1:5,9:14:88.76:183,0,89
21    45643008    rs1048710    A    G    427.51    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=1.157;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=14.74;ReadPosRankSum=1.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICOSLG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400377    GT:AD:DP:GQ:PL    0/1:15,14:29:99:458,0,490
21    45648880    rs55769116    C    T    72.94    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.42;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,3:7:99:103,0,125
21    45649666    rs4511811    G    A    52.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=8.71;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=P390L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45646717_45649972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICOSLG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400379    GT:AD:DP:GQ:PL    0/1:3,3:6:82.26:82,0,91
21    45649778    rs4568033    A    G    201.45    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.468;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.05;MQ0=0;MQRankSum=-0.536;QD=16.79;ReadPosRankSum=0.825;SNPEFF_AMINO_ACID_CHANGE=W353R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45646717_45649972;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICOSLG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400379    GT:AD:DP:GQ:PL    0/1:4,8:12:95.48:231,0,95
21    45649848    rs13052840    T    C    132.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.741;QD=13.25;ReadPosRankSum=-0.633;SNPEFF_AMINO_ACID_CHANGE=Q329;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45646717_45649972;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICOSLG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400379    GT:AD:DP:GQ:PL    0/1:4,6:10:99:163,0,123
21    45650009    rs2236668    T    C    49.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.55;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
21    45650085    rs4818892    A    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    45651413    rs3746962    A    G    670.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:703,57,0
21    45651497    rs3746963    A    G    78.10    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.52;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:108,0,25
21    45656774    rs11558819    C    T    927.09    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=2.571;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8897;MQ=60.0;MQ0=0;MQRankSum=1.168;QD=11.89;ReadPosRankSum=1.328;SNPEFF_AMINO_ACID_CHANGE=V128I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45656750_45657100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ICOSLG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000344330    GT:AD:DP:GQ:PL    0/1:42,36:78:99:957,0,1183
21    45666581    rs72021582    AC    A    73.25    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=8;FS=0.0;HRun=10;HaplotypeScore=20.7739;IndelType=D;MQ=61.34;MQ0=0;MQRankSum=0.736;QD=9.16;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNMT3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431166    GT:AD:DP:GQ:PL    0/1:2,6:8:15.19:112,0,15
21    45675827    rs968448    A    G    71.82    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.876;QD=7.98;ReadPosRankSum=0.876;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,4:9:99:102,0,157
21    45681153    rs2070565    T    C    412.15    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.892;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.351;QD=10.57;ReadPosRankSum=2.318;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,19:39:99:442,0,708
21    45708277    rs878081    C    T    702.89    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=45;Dels=0.0;FS=2.748;HRun=0;HaplotypeScore=2.7884;MQ=58.97;MQ0=0;MQRankSum=-2.208;QD=15.62;ReadPosRankSum=1.205;SNPEFF_AMINO_ACID_CHANGE=S196;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45708228_45708341;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AIRE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291582    GT:AD:DP:GQ:PL    0/1:19,26:45:99:733,0,414
21    45709906    rs1800520    C    G    140.14    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=56.04;MQ0=0;MQRankSum=-0.572;QD=11.68;ReadPosRankSum=0.572;SNPEFF_AMINO_ACID_CHANGE=S278R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45709871_45709951;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AIRE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291582    GT:AD:DP:GQ:PL    0/1:4,8:12:49.79:170,0,50
21    45710107    rs1003854    T    C    46.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.65;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
21    45710681    rs2073611    G    A    81.19    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.157;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.774;QD=6.25;ReadPosRankSum=-1.466;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,4:13:99:111,0,331
21    45711202    rs1078480    A    G    72.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.26;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
21    45712977    rs1800521    T    C    139.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=10;Dels=0.0;FS=6.532;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=13.99;ReadPosRankSum=1.951;SNPEFF_AMINO_ACID_CHANGE=A192;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45712876_45713058;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AIRE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355347    GT:AD:DP:GQ:PL    0/1:5,5:10:99:170,0,160
21    45714256    rs1800526    G    C    33.54    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,2:5:63.53:64,0,107
21    45717550    rs1133779    T    C    101.27    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.92;MQ0=0;MQRankSum=0.195;QD=4.4;ReadPosRankSum=-1.596;SNPEFF_AMINO_ACID_CHANGE=D319;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45717539_45718102;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AIRE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355347    GT:AD:DP:GQ:PL    0/1:17,6:23:99:131,0,463
21    45732116    rs1057034    C    T    82.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=20.66;SNPEFF_AMINO_ACID_CHANGE=L122;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45731988_45732177;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349048    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
21    45735995    rs2847231    T    C    215.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381188    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
21    45741359    rs2298692    T    C    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
21    45741854    rs4818904    T    C    254.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.29;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:288,24,0
21    45742115    rs2277808    G    A    463.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=33.13;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,13:14:39.12:497,39,0
21    45742822    rs11088947    T    C    557.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=32.77;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MX2;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:590,45,0
21    45746102    rs17850433    T    C    52.31    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=7.47;ReadPosRankSum=-1.754;SNPEFF_AMINO_ACID_CHANGE=V510A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45746042_45746147;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PFKL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534847    GT:AD:DP:GQ:PL    0/1:4,3:7:82.30:82,0,106
21    45746214    rs4818905    A    C    109.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325223    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:142,12,0
21    45746225    rs4818906    G    A    117.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325223    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:150,12,0
21    45750145    rs11552066    T    C    179.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.92;SNPEFF_AMINO_ACID_CHANGE=Q235R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45749774_45750209;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000325223    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:212,15,0
21    45750248    rs11552067    G    A    175.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478674    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:208,15,0
21    45750856    rs117840172    G    A    38.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.71;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478674    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:68,0,33
21    45757631    rs56242109    G    A    151.33    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.866;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.633;QD=15.13;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325223    GT:AD:DP:GQ:PL    0/1:4,6:10:99:181,0,141
21    45784271    rs2276252    G    A    98.10    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=8;Dels=0.0;FS=3.68;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=12.26;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    0/1:4,4:8:95.87:128,0,96
21    45789011    rs79090937    A    AG    217.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=13.3204;IndelType=I;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431901    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:259,18,0
21    45811343    rs1556314    T    G    311.47    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.11;DB;DP=58;Dels=0.0;FS=3.069;HRun=0;HaplotypeScore=0.0;MQ=52.01;MQ0=0;MQRankSum=-0.579;QD=5.37;ReadPosRankSum=-0.298;SNPEFF_AMINO_ACID_CHANGE=D543E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45811155_45811508;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300482    GT:AD:DP:GQ:PL    0/1:24,19:58:99:341,0,768
21    45815573    rs67099101    AG    A    273.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=148.8263;IndelType=D;MQ=29.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:316,27,0
21    45815582    .    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=5.9899;MQ=29.0;MQ0=0;QD=4.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,8:8:6.02:67,6,0
21    45815583    rs67276218    A    AG    180.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=2;HaplotypeScore=146.9238;IndelType=I;MQ=29.0;MQ0=0;QD=22.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:2,6:8:18.05:223,18,0
21    45817535    rs148378337    G    A    99.44    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.717;QD=8.29;ReadPosRankSum=-0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    0/1:6,5:12:99:129,0,173
21    45817620    rs1785436    T    C    642.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:676,51,0
21    45821794    rs1785437    C    T    2855.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.891;MQ=58.81;MQ0=0;QD=36.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:1,77:78:99:2889,223,0
21    45825975    rs1614122    G    A    1230.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.51;MQ0=0;QD=32.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,38:38:96.31:1263,96,0
21    45826434    rs1785454    C    T    175    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
21    45826462    rs1618355    C    A    259.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,9:9:24.04:292,24,0
21    45826717    rs45483495    C    T    89.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
21    45834025    rs915779    T    C    1450.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1484,126,0
21    45837790    rs1785452    T    C    722.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,21:21:57.19:756,57,0
21    45838632    rs1785467    C    T    87.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
21    45844751    rs9978351    A    G    190.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=21.2;SNPEFF_AMINO_ACID_CHANGE=Q1169R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45844735_45844822;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,9:9:18.05:224,18,0
21    45846883    .    C    T    154.37    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DP=9;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=0.6651;MQ=57.39;MQ0=0;MQRankSum=-1.179;QD=17.15;ReadPosRankSum=-0.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    0/1:2,7:9:62.22:184,0,62
21    45854807    rs749909    G    A    174.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
21    45854925    rs41277556    G    A    941.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300481    GT:AD:DP:GQ:PL    1/1:0,26:26:75.21:974,75,0
21    45861790    rs1055540    T    C    184.12    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.817;QD=13.15;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRPM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490982    GT:AD:DP:GQ:PL    0/1:5,9:14:99:214,0,171
21    45942111    rs233230    A    G    250.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf90;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330490    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:283,21,0
21    45959195    rs233316    G    A    92.19    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.531;DB;DP=16;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=52.39;MQ0=0;MQRankSum=-2.021;QD=5.76;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=P280L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45958864_45960078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400375    GT:AD:DP:GQ:PL    0/1:11,5:16:99:122,0,299
21    45959312    rs233317    C    T    1486.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7327;MQ=53.75;MQ0=0;MQRankSum=2.293;QD=29.15;ReadPosRankSum=0.659;SNPEFF_AMINO_ACID_CHANGE=R241Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45958864_45960078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400375    GT:AD:DP:GQ:PL    1/1:4,46:51:99:1520,120,0
21    45959386    rs233318    G    A    890.80    PASS    AB=0.642;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.225;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.17;MQ0=0;MQRankSum=-1.792;QD=8.4;ReadPosRankSum=-1.657;SNPEFF_AMINO_ACID_CHANGE=C216;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45958864_45960078;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400375    GT:AD:DP:GQ:PL    0/1:68,38:106:99:921,0,1991
21    45959733    rs233319    C    T    1153.44    MQFilter40    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=4.646;DB;DP=134;Dels=0.0;FS=10.632;HRun=0;HaplotypeScore=4.5116;MQ=35.95;MQ0=18;MQRankSum=0.357;QD=8.61;ReadPosRankSum=3.112;SNPEFF_AMINO_ACID_CHANGE=V101M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45958864_45960078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400375    GT:AD:DP:GQ:PL    0/1:69,65:134:99:1183,0,1335
21    45959918    rs233320    G    A    898.70    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.753;DB;DP=60;Dels=0.0;FS=3.657;HRun=0;HaplotypeScore=0.0;MQ=56.54;MQ0=1;MQRankSum=0.677;QD=14.98;ReadPosRankSum=0.068;SNPEFF_AMINO_ACID_CHANGE=P39L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45958864_45960078;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400375    GT:AD:DP:GQ:PL    0/1:28,32:60:99:929,0,827
21    45970812    rs2329834    G    A    3998.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DB;DP=124;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.3612;MQ=59.58;MQ0=0;MQRankSum=1.703;QD=32.25;ReadPosRankSum=1.237;SNPEFF_AMINO_ACID_CHANGE=P177L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45970240_45971388;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391621    GT:AD:DP:GQ:PL    1/1:1,121:124:99:3999,307,0
21    45971380    rs6147532    A    AGTGAGTGAGTGT    3041.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.0;HRun=0;HaplotypeScore=373.4152;IndelType=I;MQ=45.52;MQ0=1;QD=57.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    1/1:23,24:52:90.29:3083,90,0
21    45978090    rs233252    C    T    1770.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.1802;MQ=56.22;MQ0=0;MQRankSum=1.676;QD=24.58;ReadPosRankSum=1.453;SNPEFF_AMINO_ACID_CHANGE=C170Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45977673_45978643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391620    GT:AD:DP:GQ:PL    1/1:2,67:72:99:1803,147,0
21    45978488    rs12483390    G    A    1309.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.282;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.5;MQ0=0;MQRankSum=-1.491;QD=29.09;ReadPosRankSum=0.201;SNPEFF_AMINO_ACID_CHANGE=C37;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45977673_45978643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391620    GT:AD:DP:GQ:PL    1/1:1,44:45:70.70:1342,71,0
21    45978499    rs377549    T    G    1321.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=45.57;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=T34P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45977673_45978643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391620    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1355,111,0
21    45978503    rs435424    G    A    1348.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.73;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=C32;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45977673_45978643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391620    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1381,111,0
21    45978518    rs59607155    A    G    428.68    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.985;DB;DP=48;Dels=0.0;FS=12.072;HRun=0;HaplotypeScore=0.9983;MQ=48.13;MQ0=0;MQRankSum=-2.578;QD=8.93;ReadPosRankSum=-0.61;SNPEFF_AMINO_ACID_CHANGE=C27;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45977673_45978643;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391620    GT:AD:DP:GQ:PL    0/1:26,22:48:99:459,0,802
21    45978591    rs79221051    G    A    439.41    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.38;MQ0=0;MQRankSum=1.056;QD=10.22;ReadPosRankSum=0.41;SNPEFF_AMINO_ACID_CHANGE=T3M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45977673_45978643;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000391620    GT:AD:DP:GQ:PL    0/1:26,17:43:99:469,0,699
21    45978677    rs62220866    C    T    594.76    PASS    AB=0.323;AC=1;AF=0.50;AN=2;BaseQRankSum=1.542;DB;DP=31;Dels=0.0;FS=4.463;HRun=1;HaplotypeScore=0.0;MQ=57.25;MQ0=0;MQRankSum=0.19;QD=19.19;ReadPosRankSum=-0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:10,21:31:99:625,0,192
21    45993819    rs233285    C    T    554.47    MQFilter40    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=2.625;DB;DP=52;Dels=0.0;FS=8.159;HRun=0;HaplotypeScore=0.9469;MQ=27.14;MQ0=17;MQRankSum=0.575;QD=10.66;ReadPosRankSum=2.075;SNPEFF_AMINO_ACID_CHANGE=R51C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45993699_45993923;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334871    GT:AD:DP:GQ:PL    0/1:21,31:52:84.89:584,0,85
21    46000398    rs2020221    C    T    1243.92    PASS    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.63;DB;DP=71;Dels=0.0;FS=4.601;HRun=1;HaplotypeScore=0.9967;MQ=59.2;MQ0=0;MQRankSum=1.381;QD=17.52;ReadPosRankSum=1.127;SNPEFF_AMINO_ACID_CHANGE=D20N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_45999332_46000481;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400372    GT:AD:DP:GQ:PL    0/1:32,39:71:99:1274,0,934
21    46011170    rs233302    T    C    42.06    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.1;MQ0=0;MQRankSum=1.231;QD=8.41;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:2,3:5:51.76:72,0,52
21    46011468    rs465279    G    A    739.92    PASS    AB=0.67;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.904;DB;DP=88;Dels=0.0;FS=13.011;HRun=0;HaplotypeScore=1.6617;MQ=57.52;MQ0=0;MQRankSum=2.934;QD=8.41;ReadPosRankSum=3.026;SNPEFF_AMINO_ACID_CHANGE=P300S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46011149_46012386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400368    GT:AD:DP:GQ:PL    0/1:59,29:88:99:770,0,1772
21    46011583    rs233303    G    T    2414.66    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.909;DB;DP=164;Dels=0.0;FS=3.089;HRun=1;HaplotypeScore=0.9665;MQ=58.51;MQ0=0;MQRankSum=-0.081;QD=14.72;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=C261*;SNPEFF_CODON_CHANGE=tgC/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_21_46011149_46012386;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-6;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000400368    GT:AD:DP:GQ:PL    0/1:75,89:164:99:2445,0,1735
21    46011745    rs233304    C    T    4336.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=2.543;DB;DP=162;Dels=0.0;FS=1.176;HRun=0;HaplotypeScore=5.1025;MQ=50.97;MQ0=3;MQRankSum=5.623;QD=26.77;ReadPosRankSum=2.721;SNPEFF_AMINO_ACID_CHANGE=S207;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46011149_46012386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400368    GT:AD:DP:GQ:PL    1/1:20,140:162:54.01:4337,54,0
21    46011751    rs233305    C    T    4056.91    PASS    AB=0.136;AC=1;AF=0.50;AN=2;BaseQRankSum=2.13;DB;DP=161;Dels=0.0;FS=2.4;HRun=0;HaplotypeScore=4.6814;MQ=50.38;MQ0=3;MQRankSum=5.85;QD=25.2;ReadPosRankSum=1.875;SNPEFF_AMINO_ACID_CHANGE=T205;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46011149_46012386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400368    GT:AD:DP:GQ:PL    0/1:21,133:161:23.10:4057,0,23
21    46012181    .    C    T    171.16    MQFilter40    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=1.725;DP=82;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=0.0;MQ=13.74;MQ0=52;MQRankSum=1.018;QD=2.09;ReadPosRankSum=0.353;SNPEFF_AMINO_ACID_CHANGE=R62H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46011149_46012386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400368    GT:AD:DP:GQ:PL    0/1:47,34:82:99:201,0,243
21    46012182    rs233309    G    A    181.78    MQFilter40    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=1.68;DB;DP=80;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=13.85;MQ0=51;MQRankSum=0.546;QD=2.27;ReadPosRankSum=0.371;SNPEFF_AMINO_ACID_CHANGE=R62C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46011149_46012386;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400368    GT:AD:DP:GQ:PL    0/1:46,34:80:99:212,0,226
21    46012240    rs543542    A    G    396.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.55;MQ0=25;QD=6.95;SNPEFF_AMINO_ACID_CHANGE=C42;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46011149_46012386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400368    GT:AD:DP:GQ:PL    1/1:3,54:57:42.07:429,42,0
21    46012524    rs418260    T    C    225.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.94;MQ0=0;QD=28.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:259,24,0
21    46020473    rs113686885    C    CTCAT    2243.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.0;HRun=0;HaplotypeScore=174.7147;IndelType=I;MQ=51.8;MQ0=0;QD=59.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    1/1:2,34:35:99:2286,102,0
21    46020527    rs1211103    C    T    1975.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5518;MQ=48.64;MQ0=4;QD=27.82;SNPEFF_AMINO_ACID_CHANGE=A2;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:2,69:71:99:2009,156,0
21    46020655    rs36208679    CCTGCTGCGCCCCCAG    C    1971.81    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=4.009;DB;DP=41;FS=4.961;HRun=0;HaplotypeScore=622.0234;IndelType=D;MQ=22.03;MQ0=40;MQRankSum=3.69;QD=21.91;ReadPosRankSum=1.301;SNPEFF_AMINO_ACID_CHANGE=PCCAPS45P;SNPEFF_CODON_CHANGE=ccctgctgcgcccccagc/ccc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    0/1:66,24:41:99:2011,0,1534
21    46020720    rs7410162    C    T    206.26    MQFilter40    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=2.393;DB;DP=79;Dels=0.0;FS=5.287;HRun=0;HaplotypeScore=1.748;MQ=19.28;MQ0=36;MQRankSum=1.98;QD=2.61;ReadPosRankSum=-3.316;SNPEFF_AMINO_ACID_CHANGE=R67C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    0/1:54,25:79:99:236,0,436
21    46020721    rs4818725    G    A    218.96    MQFilter40    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=81;Dels=0.0;FS=4.925;HRun=0;HaplotypeScore=1.748;MQ=19.1;MQ0=37;MQRankSum=2.044;QD=2.7;ReadPosRankSum=-2.867;SNPEFF_AMINO_ACID_CHANGE=R67H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    0/1:56,25:81:99:249,0,447
21    46020742    rs62220888    C    G    329.26    HaplotypeScoreFilter13;MQFilter40    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=0.353;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.9356;MQ=19.74;MQ0=39;MQRankSum=2.628;QD=3.78;ReadPosRankSum=-0.057;SNPEFF_AMINO_ACID_CHANGE=P74R;SNPEFF_CODON_CHANGE=cCa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    0/1:59,25:87:99:359,0,468
21    46020867    rs944419    A    G    4371.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3893;MQ=37.36;MQ0=9;QD=24.56;SNPEFF_AMINO_ACID_CHANGE=M116V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:0,178:178:99:4372,382,0
21    46021088    rs388827    C    T    1520.15    MQFilter40    AB=0.394;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.398;DB;DP=127;Dels=0.0;FS=46.978;HRun=0;HaplotypeScore=6.0712;MQ=22.69;MQ0=52;MQRankSum=-0.525;QD=11.97;ReadPosRankSum=-1.765;SNPEFF_AMINO_ACID_CHANGE=S189;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    0/1:50,77:127:99:1550,0,345
21    46021179    rs363877    C    A    4585.19    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;DB;DP=159;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7476;MQ=47.88;MQ0=11;MQRankSum=1.708;QD=28.84;ReadPosRankSum=-1.203;SNPEFF_AMINO_ACID_CHANGE=Q220K;SNPEFF_CODON_CHANGE=Cag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:10,149:159:99:4585,358,0
21    46021205    rs389167    C    T    5061.28    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.047;DB;DP=176;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=52.59;MQ0=1;MQRankSum=1.712;QD=28.76;ReadPosRankSum=0.846;SNPEFF_AMINO_ACID_CHANGE=P228;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:2,174:176:99:5061,418,0
21    46021370    rs437149    T    C    4314.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=4.1739;MQ=54.34;MQ0=0;QD=31.72;SNPEFF_AMINO_ACID_CHANGE=P283;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:0,136:136:99:4314,361,0
21    46021390    rs446817    G    C    4428.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.16;MQ0=0;QD=34.6;SNPEFF_AMINO_ACID_CHANGE=S290T;SNPEFF_CODON_CHANGE=aGt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:0,128:128:99:4428,349,0
21    46021481    rs437334    T    C    1845.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=45.07;MQ0=0;QD=24.28;SNPEFF_AMINO_ACID_CHANGE=P320;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:0,75:76:99:1878,174,0
21    46021494    rs369720    A    G    2133.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5326;MQ=45.97;MQ0=0;QD=27.36;SNPEFF_AMINO_ACID_CHANGE=T325A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2167,186,0
21    46021607    rs370092    A    G    1275.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.99;MQ0=0;QD=30.37;SNPEFF_AMINO_ACID_CHANGE=P362;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46020497_46022091;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380102    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1308,102,0
21    46021759    rs659638    A    G    315.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:349,27,0
21    46032094    rs411254    A    G    2236.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=30.64;SNPEFF_AMINO_ACID_CHANGE=H26R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46031996_46032871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334662    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2270,178,0
21    46047322    rs62220925    G    A    1461.49    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=5.604;DB;DP=119;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5147;MQ=54.54;MQ0=0;MQRankSum=-0.521;QD=12.28;ReadPosRankSum=0.02;SNPEFF_AMINO_ACID_CHANGE=S78;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46047040_46048294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTAP10-9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397911    GT:AD:DP:GQ:PL    0/1:66,53:119:99:1491,0,1773
21    46047418    rs8126553    C    T    1995.09    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.459;DB;DP=168;Dels=0.0;FS=1.991;HRun=0;HaplotypeScore=5.0864;MQ=54.67;MQ0=0;MQRankSum=-2.682;QD=11.88;ReadPosRankSum=1.161;SNPEFF_AMINO_ACID_CHANGE=C110;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46047040_46048294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTAP10-9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397911    GT:AD:DP:GQ:PL    0/1:90,78:168:99:2025,0,2495
21    46047633    rs8127342    A    G    3155.96    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=5.983;DB;DP=224;Dels=0.0;FS=3.076;HRun=0;HaplotypeScore=4.5472;MQ=59.38;MQ0=0;MQRankSum=-1.118;QD=14.09;ReadPosRankSum=1.111;SNPEFF_AMINO_ACID_CHANGE=Y182C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46047040_46048294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTAP10-9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397911    GT:AD:DP:GQ:PL    0/1:117,107:224:99:3186,0,3454
21    46047710    rs8131142    T    C    3515.09    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.61;DB;DP=229;DS;Dels=0.0;FS=5.502;HRun=0;HaplotypeScore=1.7262;MQ=59.43;MQ0=0;MQRankSum=-0.983;QD=15.35;ReadPosRankSum=0.439;SNPEFF_AMINO_ACID_CHANGE=L208;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46047040_46048294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTAP10-9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397911    GT:AD:DP:GQ:PL    0/1:105,124:229:99:3515,0,3230
21    46047857    rs9980129    C    T    1084.78    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=79;Dels=0.0;FS=1.891;HRun=0;HaplotypeScore=2.6626;MQ=58.28;MQ0=0;MQRankSum=1.574;QD=13.73;ReadPosRankSum=-0.219;SNPEFF_AMINO_ACID_CHANGE=R257C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46047040_46048294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTAP10-9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397911    GT:AD:DP:GQ:PL    0/1:40,39:79:99:1115,0,1155
21    46047925    rs9979457    G    T    584.38    PASS    AB=0.623;AC=1;AF=0.50;AN=2;BaseQRankSum=2.579;DB;DP=61;Dels=0.0;FS=8.114;HRun=0;HaplotypeScore=1.9497;MQ=55.59;MQ0=0;MQRankSum=0.071;QD=9.58;ReadPosRankSum=0.133;SNPEFF_AMINO_ACID_CHANGE=P279;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46047040_46048294;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KRTAP10-9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397911    GT:AD:DP:GQ:PL    0/1:38,23:61:99:614,0,1148
21    46047971    rs463217    T    C    332.03    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.96;DB;DP=42;Dels=0.0;FS=8.039;HRun=1;HaplotypeScore=0.0;MQ=54.7;MQ0=0;MQRankSum=-0.051;QD=7.91;ReadPosRankSum=0.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:26,16:42:99:362,0,683
21    46057393    rs2838602    T    A    1002.17    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.028;DB;DP=84;Dels=0.0;FS=1.843;HRun=0;HaplotypeScore=2.9023;MQ=58.62;MQ0=0;MQRankSum=-0.845;QD=11.93;ReadPosRankSum=-0.39;SNPEFF_AMINO_ACID_CHANGE=V20D;SNPEFF_CODON_CHANGE=gTc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46057273_46058370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380095    GT:AD:DP:GQ:PL    0/1:43,41:84:99:1032,0,1307
21    46057548    rs4818947    A    C    902.10    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=1.616;DB;DP=84;Dels=0.0;FS=0.85;HRun=4;HaplotypeScore=2.4805;MQ=55.45;MQ0=0;MQRankSum=-0.949;QD=10.74;ReadPosRankSum=-0.866;SNPEFF_AMINO_ACID_CHANGE=T72P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46057273_46058370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380095    GT:AD:DP:GQ:PL    0/1:50,34:84:99:932,0,1421
21    46057612    rs66931310    CCTGCTGTGTGCCTGT    C    4132.24    PASS    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=6.11;DB;DP=107;FS=2.927;HRun=0;HaplotypeScore=1390.49;IndelType=D;MQ=50.98;MQ0=0;MQRankSum=-5.577;QD=38.62;ReadPosRankSum=1.517;SNPEFF_AMINO_ACID_CHANGE=ACCVPV93A;SNPEFF_CODON_CHANGE=gcctgctgtgtgcctgtc/gcc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_21_46057273_46058370;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380095    GT:AD:DP:GQ:PL    0/1:78,29:107:99:4132,0,8310
21    46057634    rs61029972    T    C    105.59    HaplotypeScoreFilter13;QDFilter2    AB=0.913;AC=1;AF=0.50;AN=2;BaseQRankSum=0.752;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=122.105;MQ=48.85;MQ0=0;MQRankSum=-1.113;QD=1.0;ReadPosRankSum=-3.55;SNPEFF_AMINO_ACID_CHANGE=C100;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46057273_46058370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380095    GT:AD:DP:GQ:PL    0/1:94,9:106:99:136,0,1684
21    46057806    rs4818950    G    A    2644.04    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.082;DB;DP=201;Dels=0.0;FS=2.416;HRun=0;HaplotypeScore=3.2418;MQ=57.23;MQ0=0;MQRankSum=-1.4;QD=13.15;ReadPosRankSum=-2.7;SNPEFF_AMINO_ACID_CHANGE=V158M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46057273_46058370;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380095    GT:AD:DP:GQ:PL    0/1:102,99:201:99:2674,0,2951
21    46057958    rs4818951    C    T    870.30    PASS    AB=0.492;AC=1;AF=0.50;AN=2;BaseQRankSum=2.326;DB;DP=61;Dels=0.0;FS=7.017;HRun=1;HaplotypeScore=0.8321;MQ=55.71;MQ0=0;MQRankSum=0.148;QD=14.27;ReadPosRankSum=1.595;SNPEFF_AMINO_ACID_CHANGE=S208;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46057273_46058370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380095    GT:AD:DP:GQ:PL    0/1:30,31:61:99:900,0,783
21    46058060    rs13051517    C    T    302.08    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.185;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.92;MQ0=0;MQRankSum=-0.646;QD=13.13;ReadPosRankSum=-0.892;SNPEFF_AMINO_ACID_CHANGE=S242;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46057273_46058370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380095    GT:AD:DP:GQ:PL    0/1:11,12:23:99:332,0,357
21    46066274    rs2248350    G    A    433.66    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.217;QD=13.99;ReadPosRankSum=0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:15,16:31:99:464,0,481
21    46066319    rs2329837    A    T    783.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=3.04;DB;DP=54;Dels=0.0;FS=7.117;HRun=0;HaplotypeScore=0.9999;MQ=59.57;MQ0=0;MQRankSum=1.603;QD=14.51;ReadPosRankSum=0.074;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:24,30:54:99:814,0,634
21    46066764    rs4818952    C    T    1541.12    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.67;DB;DP=138;Dels=0.0;FS=3.188;HRun=1;HaplotypeScore=3.6832;MQ=58.72;MQ0=0;MQRankSum=-0.536;QD=11.17;ReadPosRankSum=-1.693;SNPEFF_AMINO_ACID_CHANGE=S130F;SNPEFF_CODON_CHANGE=tCt/tTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46066331_46067564;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334670    GT:AD:DP:GQ:PL    0/1:78,60:138:99:1571,0,2292
21    46074104    rs2073437    T    C    108.31    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=1.036;QD=10.83;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000391618    GT:AD:DP:GQ:PL    0/1:6,4:10:99:138,0,204
21    46074202    rs9984726    A    G    297.71    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.503;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.36;QD=9.6;ReadPosRankSum=-0.783;SNPEFF_AMINO_ACID_CHANGE=T110;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46074130_46074576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000391618    GT:AD:DP:GQ:PL    0/1:18,13:31:99:328,0,548
21    46077812    rs2838617    A    G    243.68    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.64;DB;DP=27;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=0.728;QD=9.03;ReadPosRankSum=-0.477;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546091    GT:AD:DP:GQ:PL    0/1:17,10:27:99:274,0,586
21    46077946    rs9306111    A    G    758.15    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.672;DB;DP=74;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9867;MQ=59.44;MQ0=0;MQRankSum=-0.728;QD=10.25;ReadPosRankSum=-0.806;SNPEFF_AMINO_ACID_CHANGE=H17R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46077849_46078258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397907    GT:AD:DP:GQ:PL    0/1:38,36:74:99:788,0,1219
21    46078220    rs9306112    T    C    232.31    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.557;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.156;QD=16.59;ReadPosRankSum=-0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000546091    GT:AD:DP:GQ:PL    0/1:3,11:14:88.16:262,0,88
21    46086377    rs2838622    A    G    355.59    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.402;DB;DP=30;Dels=0.0;FS=1.485;HRun=1;HaplotypeScore=1.9783;MQ=58.11;MQ0=0;MQRankSum=0.191;QD=11.85;ReadPosRankSum=0.191;SNPEFF_AMINO_ACID_CHANGE=S143P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46086106_46086844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360770    GT:AD:DP:GQ:PL    0/1:18,12:30:99:386,0,573
21    46086718    rs7275281    G    C    48.58    QDFilter2    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.83;DB;DP=45;Dels=0.0;FS=3.227;HRun=0;HaplotypeScore=0.0;MQ=58.12;MQ0=0;MQRankSum=-0.135;QD=1.08;ReadPosRankSum=0.844;SNPEFF_AMINO_ACID_CHANGE=S29C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46086106_46086844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360770    GT:AD:DP:GQ:PL    0/1:24,21:45:78.58:79,0,827
21    46086719    rs63164960    A    G    69.39    QDFilter2    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.042;DB;DP=45;Dels=0.0;FS=3.057;HRun=2;HaplotypeScore=0.0;MQ=58.12;MQ0=0;MQRankSum=-0.893;QD=1.54;ReadPosRankSum=0.942;SNPEFF_AMINO_ACID_CHANGE=S29P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46086106_46086844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360770    GT:AD:DP:GQ:PL    0/1:24,21:45:99:99,0,784
21    46086757    rs7275298    G    A    122.81    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.586;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.48;MQ0=0;MQRankSum=1.391;QD=4.39;ReadPosRankSum=-1.147;SNPEFF_AMINO_ACID_CHANGE=A16V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46086106_46086844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360770    GT:AD:DP:GQ:PL    0/1:13,15:28:99:153,0,406
21    46086758    rs13046903    C    T    146.95    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=2.269;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=57.48;MQ0=0;MQRankSum=-0.024;QD=5.25;ReadPosRankSum=-1.244;SNPEFF_AMINO_ACID_CHANGE=A16T;SNPEFF_CODON_CHANGE=Gcg/Acg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46086106_46086844;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP12-2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360770    GT:AD:DP:GQ:PL    0/1:13,15:28:99:177,0,309
21    46086868    rs2329842    C    T    67.62    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.358;QD=11.27;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:2,4:6:61.03:98,0,61
21    46086884    rs2329843    G    A    69.69    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=0.358;QD=13.94;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:2,3:5:54.52:100,0,55
21    46086901    rs2329844    G    A    38.62    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=9.66;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:2,2:4:60.71:69,0,61
21    46101688    rs2838621    C    T    87.14    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=0.372;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.69;QD=4.59;ReadPosRankSum=0.053;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:15,4:19:99:117,0,412
21    46102090    rs8129858    T    C    159.79    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.062;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.67;MQ0=0;MQRankSum=-0.059;QD=10.65;ReadPosRankSum=0.177;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:6,9:15:99:190,0,191
21    46116963    .    G    T    94.08    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=58.01;MQ0=0;MQRankSum=0.0;QD=6.27;ReadPosRankSum=-2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:9,5:15:99:124,0,276
21    46116982    rs79468182    G    A    49.23    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=2.606;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.18;MQ0=0;MQRankSum=0.118;QD=2.74;ReadPosRankSum=-1.659;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPEAR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323084    GT:AD:DP:GQ:PL    0/1:15,3:18:79.22:79,0,301
21    46117962    rs13051842    G    A    101.49    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.28;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KRTAP10-12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400365    GT:AD:DP:GQ:PL    0/1:5,4:9:99:131,0,181
21    46191174    rs1060564    A    G    182.48    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.626;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=1.485;QD=12.17;ReadPosRankSum=-0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427597    GT:AD:DP:GQ:PL    0/1:4,11:15:99:212,0,113
21    46191256    rs4818975    C    A    607.36    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.664;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.62;MQ0=0;MQRankSum=0.933;QD=14.81;ReadPosRankSum=0.392;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427597    GT:AD:DP:GQ:PL    0/1:20,21:41:99:637,0,652
21    46191270    rs11569    C    T    470.89    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.522;DB;DP=45;Dels=0.0;FS=3.405;HRun=0;HaplotypeScore=0.0;MQ=58.75;MQ0=0;MQRankSum=0.887;QD=10.46;ReadPosRankSum=-0.012;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427597    GT:AD:DP:GQ:PL    0/1:23,22:45:99:501,0,745
21    46197450    rs2294157    C    T    95.96    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.568;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.6;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=UBE2G2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330942    GT:AD:DP:GQ:PL    0/1:6,4:10:99:126,0,167
21    46227163    rs2329902    A    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUMO3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397893    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
21    46233863    rs13050872    G    C    441.23    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.633;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.488;QD=12.26;ReadPosRankSum=-0.051;SNPEFF_AMINO_ACID_CHANGE=L60V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46233777_46234019;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SUMO3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411651    GT:AD:DP:GQ:PL    0/1:22,14:36:99:471,0,683
21    46271452    rs235314    C    T    621.55    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.094;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.985;QD=15.16;ReadPosRankSum=-1.587;SNPEFF_AMINO_ACID_CHANGE=A87T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46270581_46271542;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTTG1IP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445724    GT:AD:DP:GQ:PL    0/1:18,23:41:99:652,0,460
21    46271660    rs235315    A    G    317.23    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.844;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=1.91;QD=17.62;ReadPosRankSum=-0.133;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTTG1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474737    GT:AD:DP:GQ:PL    0/1:8,10:18:99:347,0,270
21    46281314    rs235276    T    C    34.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.34;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTTG1IP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330938    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:64,0,32
21    46306138    rs1160263    G    T    194.20    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.589;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.589;QD=24.28;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479202    GT:AD:DP:GQ:PL    0/1:2,6:8:50.70:224,0,51
21    46311813    rs235326    A    G    366.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.758;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.574;QD=13.11;ReadPosRankSum=0.299;SNPEFF_AMINO_ACID_CHANGE=V384;SNPEFF_CODON_CHANGE=gtT/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46311724_46311911;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397854    GT:AD:DP:GQ:PL    0/1:14,14:28:99:397,0,418
21    46314907    rs235330    T    A    1250.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.79;SNPEFF_AMINO_ACID_CHANGE=Q297H;SNPEFF_CODON_CHANGE=caA/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46314886_46314975;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397854    GT:AD:DP:GQ:PL    1/1:0,34:34:93.31:1284,93,0
21    46320313    rs2230528    C    T    227.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.937;DB;DP=33;Dels=0.0;FS=6.273;HRun=2;HaplotypeScore=0.0;MQ=58.59;MQ0=0;MQRankSum=0.904;QD=6.9;ReadPosRankSum=1.42;SNPEFF_AMINO_ACID_CHANGE=G216;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46320235_46320390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397854    GT:AD:DP:GQ:PL    0/1:22,11:33:99:258,0,528
21    46321659    rs55865320    C    A    216.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.273;DB;DP=20;Dels=0.0;FS=9.332;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.196;QD=10.83;ReadPosRankSum=-0.579;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517563    GT:AD:DP:GQ:PL    0/1:12,8:20:99:247,0,386
21    46321677    rs5030669    G    A    262.77    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.27;DB;DP=16;Dels=0.0;FS=6.726;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.588;QD=16.42;ReadPosRankSum=-1.059;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517563    GT:AD:DP:GQ:PL    0/1:7,9:16:99:293,0,225
21    46321818    rs1041457    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517563    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    46326815    rs5030668    C    T    237.28    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.14;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.304;QD=11.86;ReadPosRankSum=0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397846    GT:AD:DP:GQ:PL    0/1:11,9:20:99:267,0,317
21    46328026    rs3746973    G    A    81.08    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=20.27;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=P73;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46327902_46328097;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397846    GT:AD:DP:GQ:PL    0/1:1,3:4:25.76:111,0,26
21    46328099    rs760462    T    C    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000479849    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
21    46330674    rs11088969    C    A    302.13    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.639;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.091;QD=21.58;ReadPosRankSum=-1.187;SNPEFF_AMINO_ACID_CHANGE=L8;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46330640_46330700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ITGB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302347    GT:AD:DP:GQ:PL    0/1:2,12:14:42.15:332,0,42
21    46353949    rs12483718    C    G    113.27    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=18.88;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330551    GT:AD:DP:GQ:PL    0/1:2,4:6:65.40:143,0,65
21    46353985    rs9974152    A    G    119.97    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.689;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=9.23;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330551    GT:AD:DP:GQ:PL    0/1:7,6:13:99:150,0,214
21    46354055    rs9974172    A    G    1797.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=30.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330551    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1831,156,0
21    46355531    rs11088970    A    G    180.24    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.117;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.212;QD=11.27;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380070    GT:AD:DP:GQ:PL    0/1:9,7:16:99:210,0,287
21    46355710    rs11088971    A    G    94.98    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.174;DB;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.521;QD=6.33;ReadPosRankSum=-0.289;SNPEFF_AMINO_ACID_CHANGE=R54;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46355542_46355805;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf67;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330551    GT:AD:DP:GQ:PL    0/1:8,7:15:99:125,0,237
21    46357697    rs4818992    A    C    111.92    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf67;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330551    GT:AD:DP:GQ:PL    0/1:2,4:6:63.18:142,0,63
21    46363434    rs2294169    T    C    69.75    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.72;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291634    GT:AD:DP:GQ:PL    0/1:3,5:8:99:100,0,100
21    46393090    rs3827260    C    T    202.59    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.102;DB;DP=20;Dels=0.0;FS=1.829;HRun=0;HaplotypeScore=0.8321;MQ=58.84;MQ0=0;MQRankSum=-0.776;QD=10.13;ReadPosRankSum=-0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf70;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458015    GT:AD:DP:GQ:PL    0/1:10,9:20:99:233,0,262
21    46596639    rs71324410    A    G    184.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.248;QD=20.51;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADARB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449478    GT:AD:DP:GQ:PL    0/1:3,6:9:94.10:215,0,94
21    46600126    rs2838803    C    T    175.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=14.6;ReadPosRankSum=0.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADARB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449478    GT:AD:DP:GQ:PL    0/1:6,6:12:99:205,0,215
21    46602833    rs2071873    C    T    79.74    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADARB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348831    GT:AD:DP:GQ:PL    0/1:1,3:4:30.97:110,0,31
21    46624349    rs2246081    C    T    135.21    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-2.793;QD=11.27;ReadPosRankSum=1.134;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADARB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348831    GT:AD:DP:GQ:PL    0/1:7,5:12:99:165,0,236
21    46641017    rs2838818    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADARB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348831    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
21    46641968    rs1051367    G    A    480.45    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.818;DB;DP=31;Dels=0.0;FS=5.859;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.129;QD=15.5;ReadPosRankSum=0.473;SNPEFF_AMINO_ACID_CHANGE=A694T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46641933_46643492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ADARB1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000539917    GT:AD:DP:GQ:PL    0/1:11,20:31:99:510,0,328
21    46685592    rs1006887    C    G    643.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POFUT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463917    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:677,51,0
21    46716035    rs117727881    T    A    133.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=14.87;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX322557.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400362    GT:AD:DP:GQ:PL    0/1:3,6:9:97.82:164,0,98
21    46716223    rs117903119    G    A    1239.87    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=2.939;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.374;QD=17.46;ReadPosRankSum=-1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BX322557.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400362    GT:AD:DP:GQ:PL    0/1:31,40:71:99:1270,0,825
21    46722973    rs2838870    T    C    116.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.37;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=NCRNA00315;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441947    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:149,12,0
21    46841398    rs2838920    G    A    236.42    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=2.024;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.519;QD=8.76;ReadPosRankSum=-1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400337    GT:AD:DP:GQ:PL    0/1:15,11:26:99:266,0,468
21    46842267    rs8130384    G    A    136.71    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=19.53;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400337    GT:AD:DP:GQ:PL    0/1:2,5:7:57.52:167,0,58
21    46842443    rs8131523    C    T    99.39    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=14.2;ReadPosRankSum=-0.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400337    GT:AD:DP:GQ:PL    0/1:3,4:7:91.52:129,0,92
21    46875564    rs914230    T    C    1732.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6567;MQ=60.0;MQ0=0;QD=31.5;SNPEFF_AMINO_ACID_CHANGE=H40;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46875403_46876090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1765,135,0
21    46875874    rs61759533    G    A    284.84    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.897;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;MQRankSum=0.608;QD=8.38;ReadPosRankSum=-0.755;SNPEFF_AMINO_ACID_CHANGE=V144I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46875403_46876090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:20,13:33:99:315,0,634
21    46876083    rs2236451    A    G    272.52    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.262;DB;DP=26;Dels=0.0;FS=6.701;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.837;QD=10.48;ReadPosRankSum=-0.375;SNPEFF_AMINO_ACID_CHANGE=P213;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46875403_46876090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:12,14:26:99:303,0,392
21    46876173    rs2236452    C    T    137.33    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=10;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.573;QD=13.73;ReadPosRankSum=1.001;SNPEFF_AMINO_ACID_CHANGE=P243;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46875424_46876795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359759    GT:AD:DP:GQ:PL    0/1:3,7:10:63.31:167,0,63
21    46876306    rs11702494    G    A    54.56    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.956;DB;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=50.65;MQ0=0;MQRankSum=-1.517;QD=6.82;ReadPosRankSum=1.92;SNPEFF_AMINO_ACID_CHANGE=A288T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46875424_46876795;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359759    GT:AD:DP:GQ:PL    0/1:5,3:8:84.56:85,0,159
21    46876580    rs8133886    C    T    74.16    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=0.322;QD=8.24;ReadPosRankSum=-1.92;SNPEFF_AMINO_ACID_CHANGE=T379M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46875424_46876795;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359759    GT:AD:DP:GQ:PL    0/1:6,3:9:99:104,0,123
21    46897093    rs2236461    T    C    49.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
21    46898174    rs2236464    T    C    157.58    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=0.101;QD=12.12;ReadPosRankSum=0.377;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:7,6:13:99:188,0,205
21    46899947    rs9979845    G    A    722.88    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.587;DB;DP=47;Dels=0.0;FS=1.186;HRun=0;HaplotypeScore=1.7552;MQ=59.03;MQ0=0;MQRankSum=-0.141;QD=15.06;ReadPosRankSum=0.893;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:22,24:47:99:753,0,449
21    46900214    rs9980181    G    A    35.30    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=5.04;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:5,2:7:65.29:65,0,109
21    46900546    rs28608951    C    T    264.37    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=0.176;DB;DP=21;Dels=0.0;FS=4.123;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.599;QD=12.59;ReadPosRankSum=-0.176;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:11,10:21:99:294,0,374
21    46900856    rs9983599    C    T    74.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.37;ReadPosRankSum=1.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:3,3:6:72.37:104,0,72
21    46901973    rs12482088    A    C    201.66    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-1.246;QD=18.33;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:4,7:11:99:232,0,126
21    46902273    rs2236468    A    G    37.35    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=9.34;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=P564;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46902256_46902278;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400347    GT:AD:DP:GQ:PL    0/1:1,3:4:30.98:67,0,31
21    46902380    rs12482373    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
21    46906960    rs3818662    A    G    42.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.07;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:72,0,30
21    46907479    rs9976784    G    A    248.87    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.655;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=-0.387;QD=11.85;ReadPosRankSum=1.936;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:11,10:21:99:279,0,387
21    46908355    rs11702425    T    C    905.56    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=3.919;DB;DP=76;Dels=0.0;FS=2.087;HRun=0;HaplotypeScore=2.6609;MQ=59.39;MQ0=0;MQRankSum=0.108;QD=11.92;ReadPosRankSum=-0.985;SNPEFF_AMINO_ACID_CHANGE=L1055;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46908332_46908358;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359759    GT:AD:DP:GQ:PL    0/1:40,36:76:99:936,0,1121
21    46909516    rs8131819    G    A    63.28    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=12.66;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355480    GT:AD:DP:GQ:PL    0/1:2,3:5:65.50:93,0,66
21    46910321    rs2838947    T    C    44.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342220    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:76,6,0
21    46911276    rs62216329    G    T    37.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380014    GT:AD:DP:GQ:PL    0/1:2,2:4:67.28:67,0,68
21    46912970    rs2297289    T    A    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380014    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
21    46914642    rs9977637    A    G    99.22    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.633;QD=9.92;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380014    GT:AD:DP:GQ:PL    0/1:6,4:10:99:129,0,177
21    46916516    rs5844240    AC    A    604.97    PASS    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=5.139;DB;DP=44;FS=1.267;HRun=3;HaplotypeScore=114.4023;IndelType=D;MQ=60.73;MQ0=0;MQRankSum=1.154;QD=13.75;ReadPosRankSum=1.859;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342220    GT:AD:DP:GQ:PL    0/1:23,21:44:99:644,0,776
21    46923874    rs79785371    G    A    277.40    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.888;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.222;QD=13.87;ReadPosRankSum=0.933;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342220    GT:AD:DP:GQ:PL    0/1:9,11:20:99:307,0,207
21    46925294    .    G    A    125.60    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.47;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=57.66;MQ0=0;MQRankSum=0.103;QD=12.56;ReadPosRankSum=0.676;SNPEFF_AMINO_ACID_CHANGE=P1012;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46925272_46925345;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL18A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400337    GT:AD:DP:GQ:PL    0/1:5,5:10:99:156,0,162
21    46951556    rs12659    A    G    1141.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=P192;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46951303_46952062;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC19A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000485649    GT:AD:DP:GQ:PL    1/1:0,34:34:93.26:1174,93,0
21    46952094    rs914231    T    C    257.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC19A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486303    GT:AD:DP:GQ:PL    1/1:0,12:12:27.05:291,27,0
21    46957794    rs1051266    T    C    42.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.32;SNPEFF_AMINO_ACID_CHANGE=H27R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_46957685_46957922;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC19A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311124    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
21    47320805    rs1547240    G    A    478.29    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=2.491;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=-1.972;QD=17.71;ReadPosRankSum=0.519;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549265    GT:AD:DP:GQ:PL    0/1:11,16:27:99:508,0,305
21    47329352    rs2277812    T    C    445.81    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.819;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.13;MQ0=0;MQRankSum=0.893;QD=9.29;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=C109;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47329269_47329400;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400304    GT:AD:DP:GQ:PL    0/1:28,20:48:99:476,0,767
21    47330876    .    G    A    474.99    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.999;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9996;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=14.39;ReadPosRankSum=-1.027;SNPEFF_AMINO_ACID_CHANGE=V146M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47330816_47330944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400304    GT:AD:DP:GQ:PL    0/1:17,16:33:99:505,0,537
21    47338007    rs373617    A    G    144.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.01;MQ0=0;QD=28.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
21    47338218    rs374331    A    G    1295.76    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=0.859;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=50.74;MQ0=1;MQRankSum=3.327;QD=13.78;ReadPosRankSum=-0.016;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:49,45:94:99:1326,0,1412
21    47338291    rs1736426    G    C    576.30    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.015;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7333;MQ=25.68;MQ0=7;MQRankSum=2.121;QD=11.53;ReadPosRankSum=-2.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    1/1:9,41:50:8.02:608,8,0
21    47338458    rs113399599    G    A    54.29    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=31.2;MQ0=3;MQRankSum=-2.949;QD=2.26;ReadPosRankSum=1.883;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:12,12:24:84.28:84,0,358
21    47338506    rs77816383    G    A    175.14    QDFilter2    AB=0.862;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.448;DB;DP=196;Dels=0.0;FS=25.727;HRun=0;HaplotypeScore=0.8667;MQ=42.28;MQ0=11;MQRankSum=-2.183;QD=0.89;ReadPosRankSum=-2.518;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:168,27:196:99:205,0,4394
21    47338532    rs140905160    G    A    670.75    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=4.598;DB;DP=249;DS;Dels=0.0;FS=8.166;HRun=0;HaplotypeScore=7.8406;MQ=42.42;MQ0=17;MQRankSum=-3.042;QD=2.69;ReadPosRankSum=4.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:197,52:249:99:701,0,4693
21    47338534    rs143213345    C    T    664.50    PASS    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=3.227;DB;DP=249;DS;Dels=0.0;FS=6.71;HRun=1;HaplotypeScore=5.2749;MQ=42.41;MQ0=18;MQRankSum=-3.172;QD=2.67;ReadPosRankSum=4.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:197,52:249:99:694,0,4679
21    47338675    rs74863785    G    C    301.40    QDFilter2    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=0.699;DB;DP=197;Dels=0.0;FS=0.802;HRun=1;HaplotypeScore=2.6147;MQ=44.26;MQ0=8;MQRankSum=-0.21;QD=1.53;ReadPosRankSum=-0.654;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:156,41:197:99:331,0,3952
21    47338698    rs113435487    G    A    266.52    QDFilter2    AB=0.801;AC=1;AF=0.50;AN=2;BaseQRankSum=0.223;DB;DP=206;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=44.71;MQ0=7;MQRankSum=-0.408;QD=1.29;ReadPosRankSum=4.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:165,41:206:99:297,0,4433
21    47338724    rs28617362    A    G    1431.47    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.903;DB;DP=206;Dels=0.0;FS=2.699;HRun=0;HaplotypeScore=1.86;MQ=45.14;MQ0=3;MQRankSum=-3.12;QD=6.95;ReadPosRankSum=1.704;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:122,84:206:99:1461,0,2986
21    47338726    rs8134757    T    C    1400.05    PASS    AB=0.584;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.178;DB;DP=209;Dels=0.0;FS=3.549;HRun=0;HaplotypeScore=1.86;MQ=44.99;MQ0=3;MQRankSum=-2.989;QD=6.7;ReadPosRankSum=2.799;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:122,87:209:99:1430,0,2965
21    47338745    rs2776397    A    G    1640.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=199;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.9613;MQ=43.31;MQ0=2;QD=8.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    1/1:0,199:199:99:1673,141,0
21    47338773    rs116217413    C    T    751.87    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=217;Dels=0.0;FS=9.29;HRun=1;HaplotypeScore=12.6924;MQ=41.73;MQ0=5;MQRankSum=-6.309;QD=3.46;ReadPosRankSum=1.332;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:148,69:217:99:782,0,4217
21    47338803    rs73384420    T    A    605.78    HaplotypeScoreFilter13    AB=0.835;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.046;DB;DP=206;Dels=0.0;FS=5.547;HRun=0;HaplotypeScore=35.7578;MQ=44.39;MQ0=5;MQRankSum=-2.229;QD=2.94;ReadPosRankSum=5.349;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:172,34:206:99:636,0,4488
21    47338819    rs402355    C    T    1290.80    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=6.087;DB;DP=187;Dels=0.0;FS=1.642;HRun=0;HaplotypeScore=3.6118;MQ=45.41;MQ0=4;MQRankSum=3.406;QD=6.9;ReadPosRankSum=-0.252;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:136,51:187:99:1321,0,3192
21    47338851    .    A    T    70.88    HaplotypeScoreFilter13;QDFilter2    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=0.166;DP=124;Dels=0.0;FS=1.364;HRun=1;HaplotypeScore=29.5446;MQ=48.51;MQ0=4;MQRankSum=-5.249;QD=0.57;ReadPosRankSum=-5.954;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:99,25:124:99:101,0,3260
21    47338854    rs375971    C    G    1035.79    HaplotypeScoreFilter13    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=1.397;DB;DP=122;Dels=0.0;FS=3.326;HRun=0;HaplotypeScore=29.5531;MQ=49.17;MQ0=4;MQRankSum=2.151;QD=8.49;ReadPosRankSum=1.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:84,38:122:99:1066,0,2299
21    47350796    rs11089031    G    A    506.40    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.277;QD=14.89;ReadPosRankSum=-0.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346743    GT:AD:DP:GQ:PL    0/1:15,19:34:99:536,0,444
21    47360338    rs8133858    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCBP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468429    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    47404397    rs3746993    A    G    255.42    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-1.09;QD=17.03;ReadPosRankSum=-0.934;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:4,11:15:56.84:285,0,57
21    47409113    rs8129814    C    T    296.29    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.8;DB;DP=14;Dels=0.0;FS=3.041;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.667;QD=21.16;ReadPosRankSum=1.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492851    GT:AD:DP:GQ:PL    0/1:5,9:14:99:326,0,99
21    47409239    rs2277813    G    C    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492851    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
21    47409503    rs2277814    A    G    313.71    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.033;DB;DP=29;Dels=0.0;FS=1.54;HRun=0;HaplotypeScore=0.6651;MQ=57.57;MQ0=0;MQRankSum=-0.364;QD=10.82;ReadPosRankSum=-0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492851    GT:AD:DP:GQ:PL    0/1:16,13:29:99:344,0,379
21    47409580    rs34495634    C    A    476.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.299;DB;DP=48;Dels=0.0;FS=1.134;HRun=0;HaplotypeScore=0.9867;MQ=59.52;MQ0=0;MQRankSum=-0.567;QD=9.93;ReadPosRankSum=-0.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492851    GT:AD:DP:GQ:PL    0/1:24,24:48:99:507,0,758
21    47410626    rs1980981    T    G    279.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492851    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:312,24,0
21    47410931    rs1980982    T    C    362.48    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.032;DB;DP=38;Dels=0.0;FS=3.174;HRun=0;HaplotypeScore=1.6208;MQ=57.77;MQ0=0;MQRankSum=-0.899;QD=9.54;ReadPosRankSum=-1.356;SNPEFF_AMINO_ACID_CHANGE=G365;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47410893_47410955;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:20,18:38:99:392,0,582
21    47412751    rs2850173    A    C    175.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=21.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:208,15,0
21    47417206    rs11701583    A    G    171.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:204,18,0
21    47417415    rs2276254    C    A    163.82    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.377;QD=12.6;ReadPosRankSum=1.493;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:6,7:13:99:194,0,169
21    47417432    rs112235964    A    AG    373.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=6;HaplotypeScore=40.3965;IndelType=I;MQ=60.83;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:2,11:13:33.11:415,33,0
21    47417975    rs3737437    A    G    147.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
21    47418234    rs11700844    G    C    104.05    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.103;QD=9.46;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:6,5:11:99:134,0,141
21    47419520    rs75434097    G    A    99.15    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=10;Dels=0.0;FS=2.808;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=9.92;ReadPosRankSum=0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:6,4:10:99:129,0,186
21    47419697    rs8131101    C    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
21    47419747    rs8131632    A    G    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
21    47420016    rs35900642    G    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
21    47420418    rs4818812    C    T    148.17    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=21.17;ReadPosRankSum=-1.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:2,5:7:61.92:178,0,62
21    47420565    rs142824931    AGGAGGGCGGCCGGGGAG    A    1916.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=500.0101;IndelType=D;MQ=47.61;MQ0=0;QD=66.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:1,28:29:75.25:1958,75,0
21    47420723    rs13053065    G    C    603.51    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.959;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.29;MQ0=0;MQRankSum=-0.329;QD=10.97;ReadPosRankSum=-0.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:28,27:55:99:633,0,859
21    47420726    rs7276098    C    G    1624.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=54.55;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1657,135,0
21    47420761    rs7283989    G    A    356.95    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.331;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.676;QD=11.9;ReadPosRankSum=-1.287;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:16,14:30:99:387,0,488
21    47420769    rs7276782    A    G    909.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6553;MQ=56.49;MQ0=0;QD=33.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:942,72,0
21    47420866    rs7276374    C    T    111.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466285    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:144,12,0
21    47420971    rs7277078    A    G    32.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466285    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:64,6,0
21    47421315    rs11701124    C    T    1043.75    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=4.282;DB;DP=64;Dels=0.0;FS=2.987;HRun=0;HaplotypeScore=0.9665;MQ=59.28;MQ0=0;MQRankSum=-0.193;QD=16.31;ReadPosRankSum=-1.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466285    GT:AD:DP:GQ:PL    0/1:27,37:64:99:1074,0,599
21    47422412    rs35796750    C    T    437.92    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=0.728;DB;DP=34;Dels=0.0;FS=5.46;HRun=0;HaplotypeScore=0.9983;MQ=59.32;MQ0=0;MQRankSum=-0.347;QD=12.88;ReadPosRankSum=-1.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466285    GT:AD:DP:GQ:PL    0/1:15,19:34:99:468,0,473
21    47422639    rs2236485    A    G    837.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466285    GT:AD:DP:GQ:PL    1/1:0,29:29:66.21:870,66,0
21    47422712    rs2236488    C    T    117.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466285    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:150,12,0
21    47423133    rs2236489    C    G    543.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463060    GT:AD:DP:GQ:PL    1/1:0,21:21:45.14:577,45,0
21    47423389    rs1053312    G    A    471.90    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.753;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.25;MQ0=0;MQRankSum=0.67;QD=15.22;ReadPosRankSum=0.335;SNPEFF_AMINO_ACID_CHANGE=R850H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47423305_47424964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:14,17:31:99:502,0,403
21    47423507    rs1053315    G    A    659.15    PASS    AB=0.343;AC=1;AF=0.50;AN=2;BaseQRankSum=2.387;DB;DP=35;Dels=0.0;FS=1.533;HRun=0;HaplotypeScore=0.9998;MQ=59.34;MQ0=0;MQRankSum=1.967;QD=18.83;ReadPosRankSum=2.845;SNPEFF_AMINO_ACID_CHANGE=A889;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47423305_47424964;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:12,23:35:99:689,0,297
21    47423509    rs13051496    C    T    343.68    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.387;DB;DP=36;Dels=0.0;FS=1.384;HRun=1;HaplotypeScore=0.9998;MQ=59.36;MQ0=0;MQRankSum=0.162;QD=9.55;ReadPosRankSum=-2.901;SNPEFF_AMINO_ACID_CHANGE=S890L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47423305_47424964;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361866    GT:AD:DP:GQ:PL    0/1:24,12:36:99:374,0,677
21    47532553    rs112472569    A    G    141.60    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.369;DB;DP=13;Dels=0.0;FS=2.276;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.2;QD=10.89;ReadPosRankSum=-0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436769    GT:AD:DP:GQ:PL    0/1:7,6:13:99:172,0,197
21    47538960    rs2839110    G    A    93.74    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.05;DB;DP=17;Dels=0.0;FS=2.06;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.357;QD=5.51;ReadPosRankSum=-0.754;SNPEFF_AMINO_ACID_CHANGE=S399N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47538944_47539033;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    0/1:11,6:17:99:124,0,364
21    47539790    rs3737362    A    G    71.09    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.727;QD=17.77;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485591    GT:AD:DP:GQ:PL    0/1:1,3:4:27.97:101,0,28
21    47540842    rs55964853    G    C    33.14    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=8.29;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485591    GT:AD:DP:GQ:PL    0/1:1,3:4:23.47:63,0,23
21    47541553    rs1077182    A    G    356.53    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.723;DB;DP=27;Dels=0.0;FS=4.809;HRun=2;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-0.797;QD=13.2;ReadPosRankSum=0.746;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485591    GT:AD:DP:GQ:PL    0/1:14,12:27:99:387,0,366
21    47541744    rs915785    A    G    115.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485591    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:148,12,0
21    47541986    rs9976026    T    C    45.16    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.437;DB;DP=13;Dels=0.0;FS=7.16;HRun=2;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.592;QD=3.47;ReadPosRankSum=-1.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485591    GT:AD:DP:GQ:PL    0/1:10,3:13:75.15:75,0,367
21    47542654    rs5844253    G    GC    169.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=1;HaplotypeScore=30.2339;IndelType=I;MQ=57.52;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:212,15,0
21    47542779    rs17357592    C    T    388.96    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.336;DB;DP=31;Dels=0.0;FS=1.412;HRun=0;HaplotypeScore=0.0;MQ=58.03;MQ0=0;MQRankSum=0.771;QD=12.55;ReadPosRankSum=-0.336;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    0/1:15,16:31:99:419,0,403
21    47542861    rs915786    A    G    416.56    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=0.315;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.34;MQ0=0;MQRankSum=-1.374;QD=11.9;ReadPosRankSum=0.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    0/1:16,19:35:99:447,0,432
21    47545155    rs2839113    A    G    382.77    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.671;DB;DP=39;Dels=0.0;FS=7.279;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.445;QD=9.81;ReadPosRankSum=1.947;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    0/1:22,16:39:99:413,0,572
21    47545369    .    A    AC    466.03    PASS    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.221;DP=45;FS=13.111;HRun=7;HaplotypeScore=140.8072;IndelType=I;MQ=59.73;MQ0=0;MQRankSum=0.442;QD=10.36;ReadPosRankSum=-1.265;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_21_47545331_47545531;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000413758    GT:AD:DP:GQ:PL    0/1:28,17:45:99:505,0,467
21    47545676    rs78764604    G    C    91.50    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.323;DB;DP=14;Dels=0.0;FS=2.276;HRun=1;HaplotypeScore=1.7074;MQ=60.0;MQ0=0;MQRankSum=-1.356;QD=6.54;ReadPosRankSum=-1.614;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    0/1:8,6:14:99:121,0,259
21    47548555    rs2839116    A    C    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413758    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
21    47549510    rs7717    G    C    116.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413758    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
21    47552385    rs6652    C    T    303.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.609;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=16.86;ReadPosRankSum=0.702;SNPEFF_AMINO_ACID_CHANGE=R993;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47551868_47552763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    0/1:6,12:18:99:333,0,138
21    47556793    rs12774    C    T    327.89    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.887;DB;DP=19;Dels=0.0;FS=4.242;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.395;QD=17.26;ReadPosRankSum=-1.225;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    0/1:7,12:19:99:358,0,191
21    47556882    rs79622089    G    A    437.46    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=25;Dels=0.0;FS=10.667;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.732;QD=17.5;ReadPosRankSum=0.029;SNPEFF_AMINO_ACID_CHANGE=P542L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47556829_47556967;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359679    GT:AD:DP:GQ:PL    0/1:11,14:25:99:467,0,224
21    47557074    rs9284510    A    G    1323.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL6A2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300527    GT:AD:DP:GQ:PL    1/1:0,38:40:99:1356,111,0
21    47558552    rs61735841    G    A    251.10    PASS    AB=0.1;AC=1;AF=0.50;AN=2;BaseQRankSum=1.044;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=1.044;QD=25.11;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A438V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47558422_47558560;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    0/1:1,9:10:4.47:280,0,4
21    47558586    rs60525628    A    G    328.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:361,27,0
21    47558591    rs62214031    A    G    274.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=30.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
21    47558994    rs1980983    A    G    71.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.28;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    0/1:2,3:5:65.29:101,0,65
21    47570266    rs55761347    G    C    372.23    MQFilter40    AB=0.194;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.466;DB;DP=31;Dels=0.0;FS=23.096;HRun=4;HaplotypeScore=0.0;MQ=34.6;MQ0=0;MQRankSum=-1.155;QD=12.01;ReadPosRankSum=1.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    0/1:6,25:31:99:402,0,121
21    47570271    .    T    C    72.83    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.021;DP=30;Dels=0.0;FS=10.659;HRun=4;HaplotypeScore=0.9983;MQ=37.32;MQ0=0;MQRankSum=-1.531;QD=2.43;ReadPosRankSum=2.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    0/1:12,18:30:99:103,0,321
21    47570652    rs7277617    A    G    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
21    47571383    rs34248722    C    CA    919.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=63.0973;IndelType=I;MQ=60.98;MQ0=0;QD=41.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    1/1:1,21:22:63.13:962,63,0
21    47573887    rs8126678    A    C    35.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FTCD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291670    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:66,6,0
21    47581423    rs14378    C    T    69.15    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=7.68;ReadPosRankSum=1.307;SNPEFF_AMINO_ACID_CHANGE=S144N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47581062_47581619;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000330205    GT:AD:DP:GQ:PL    0/1:4,5:9:99:99,0,147
21    47581835    rs113710653    C    T    152.77    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=13.89;ReadPosRankSum=0.825;SNPEFF_AMINO_ACID_CHANGE=E231K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47581830_47581981;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf56;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000291672    GT:AD:DP:GQ:PL    0/1:5,6:11:94.47:183,0,94
21    47582102    rs3747003    C    T    36.54    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C21orf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291672    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:67,0,27
21    47608580    rs2968    G    A    736.49    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.73;DB;DP=62;Dels=0.0;FS=1.071;HRun=0;HaplotypeScore=0.9995;MQ=59.63;MQ0=0;MQRankSum=-0.193;QD=11.88;ReadPosRankSum=0.635;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP001468.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424538    GT:AD:DP:GQ:PL    0/1:36,26:62:99:766,0,1002
21    47608877    rs56173768    C    A    31.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=5.22;ReadPosRankSum=-1.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP001468.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424538    GT:AD:DP:GQ:PL    0/1:3,3:6:61.32:61,0,109
21    47611310    rs2187118    A    G    155.96    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484808    GT:AD:DP:GQ:PL    0/1:1,5:6:23.70:186,0,24
21    47611811    .    T    C    69.62    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.684;DP=8;Dels=0.0;FS=3.332;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.7;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=N604S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47611795_47611873;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457828    GT:AD:DP:GQ:PL    0/1:5,3:8:99:100,0,181
21    47614469    rs2254524    A    C    347.29    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=19;Dels=0.0;FS=2.098;HRun=0;HaplotypeScore=2.8374;MQ=60.0;MQ0=0;MQRankSum=-2.412;QD=18.28;ReadPosRankSum=0.482;SNPEFF_AMINO_ACID_CHANGE=L562V;SNPEFF_CODON_CHANGE=Ttg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47614405_47614575;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000457828    GT:AD:DP:GQ:PL    0/1:6,13:19:99:377,0,197
21    47616071    rs7282841    G    C    247.27    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=17;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.625;QD=14.55;ReadPosRankSum=1.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:9,8:17:99:277,0,321
21    47616080    rs2839140    G    A    233.11    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.262;DB;DP=19;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.9998;MQ=58.78;MQ0=0;MQRankSum=-1.197;QD=12.27;ReadPosRankSum=1.858;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:11,8:19:99:263,0,329
21    47627245    rs2839144    C    A    105.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.61;MQ0=0;MQRankSum=-0.72;QD=17.57;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:2,4:6:64.41:135,0,64
21    47630550    rs2839146    C    T    129.41    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.054;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.203;QD=12.94;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:3,7:10:99:159,0,102
21    47633789    rs9974665    C    G    100.79    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.6;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450351    GT:AD:DP:GQ:PL    0/1:4,4:8:90.04:131,0,90
21    47635577    rs2839152    C    T    107.51    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.652;QD=11.95;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450351    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,179
21    47635627    rs9980968    C    G    197.34    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9997;MQ=58.63;MQ0=0;MQRankSum=1.482;QD=11.61;ReadPosRankSum=0.318;SNPEFF_AMINO_ACID_CHANGE=P208;SNPEFF_CODON_CHANGE=ccG/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47635599_47635707;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000457828    GT:AD:DP:GQ:PL    0/1:9,8:17:99:227,0,276
21    47635713    rs11701729    G    A    513.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450351    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:547,42,0
21    47639492    rs2277826    C    G    308.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=3.51;DB;DP=20;Dels=0.0;FS=3.056;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.193;QD=15.42;ReadPosRankSum=1.119;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:8,12:20:99:338,0,237
21    47641700    rs2839157    G    T    695.05    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=3.993;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.454;QD=18.29;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:14,24:38:99:725,0,344
21    47641996    rs2280959    C    G    295.07    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=0.176;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.932;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=12.83;ReadPosRankSum=-0.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:13,10:23:99:325,0,310
21    47642016    rs2280958    C    T    117.75    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=6.93;ReadPosRankSum=-2.549;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:11,6:17:99:148,0,341
21    47647618    rs67754005    GAA    G    677.73    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=2.6;DB;DP=85;FS=0.0;HRun=13;HaplotypeScore=365.9781;IndelType=D;MQ=57.8;MQ0=1;MQRankSum=0.697;QD=7.88;ReadPosRankSum=3.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LSS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356396    GT:AD:DP:GQ:PL    0/1:48,33:85:99:717,0,1223
21    47655027    rs2298695    A    C    155.29    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=22.18;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    0/1:2,5:7:61.92:185,0,62
21    47656712    rs2839166    T    C    937.48    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.712;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.94;QD=12.02;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    0/1:46,32:78:99:967,0,1505
21    47662446    rs1060609    G    C    1489.86    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.09;DB;DP=115;Dels=0.0;FS=3.57;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;MQRankSum=1.002;QD=12.96;ReadPosRankSum=1.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    0/1:62,53:115:99:1520,0,1847
21    47662899    rs111512878    CA    C    366.74    PASS    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.259;DB;DP=97;FS=4.378;HRun=14;HaplotypeScore=718.485;IndelType=D;MQ=54.69;MQ0=0;MQRankSum=1.89;QD=3.74;ReadPosRankSum=4.489;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    0/1:56,38:97:99:406,0,616
21    47662920    rs60691594    C    A    646.99    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.302;DB;DP=76;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=3.4279;MQ=53.24;MQ0=0;MQRankSum=-1.325;QD=8.51;ReadPosRankSum=0.393;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    0/1:34,42:76:99:677,0,897
21    47665116    rs17183241    GAAGA    G    313.49    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.209;DB;DP=24;FS=1.833;HRun=0;HaplotypeScore=128.3499;IndelType=D;MQ=59.94;MQ0=0;MQRankSum=0.109;QD=13.06;ReadPosRankSum=-0.398;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    0/1:16,8:24:99:353,0,968
21    47669648    rs2330353    T    A    339.56    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.348;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9661;MQ=59.14;MQ0=0;MQRankSum=-0.116;QD=12.58;ReadPosRankSum=-1.043;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481113    GT:AD:DP:GQ:PL    0/1:13,13:27:99:370,0,429
21    47674275    rs2250213    G    A    480.85    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.021;DB;DP=35;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=6.3842;MQ=53.23;MQ0=0;MQRankSum=0.353;QD=13.36;ReadPosRankSum=0.312;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494755    GT:AD:DP:GQ:PL    0/1:16,19:35:99:511,0,385
21    47678774    rs2839178    A    G    1767.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.55;MQ0=0;QD=34.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1801,132,0
21    47681127    rs2839180    T    C    1616.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=35.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1649,120,0
21    47685787    rs9637172    T    C    2315.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479557    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2348,181,0
21    47685939    rs2839181    A    G    3920.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5149;MQ=59.19;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=H977;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47685839_47686080;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    1/1:0,114:114:99:3921,319,0
21    47686152    rs2839182    C    T    4980.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.196;MQ=59.22;MQ0=0;QD=34.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479557    GT:AD:DP:GQ:PL    1/1:0,142:143:99:4981,373,0
21    47686174    rs4818831    T    C    3555.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9881;MQ=59.03;MQ0=0;QD=30.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479557    GT:AD:DP:GQ:PL    1/1:0,115:115:99:3556,307,0
21    47690068    rs2839186    C    T    248.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479557    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:282,21,0
21    47692798    rs2839188    C    T    177.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.549;DB;DP=16;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=11.11;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    0/1:10,6:16:99:208,0,254
21    47695395    rs2839191    C    G    112.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:145,12,0
21    47695417    rs4819221    A    C    56.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
21    47699748    .    A    G    67.18    MQFilter40    AC=2;AF=1.00;AN=2;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9665;MQ=35.14;MQ0=0;QD=9.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291688    GT:AD:DP:GQ:PL    1/1:0,7:7:11.97:100,12,0
21    47705237    rs17176131    T    C    1677.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.43;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MCM3AP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495475    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1710,138,0
21    47707054    rs13049893    C    T    104.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9983;MQ=36.07;MQ0=0;QD=8.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YBEY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329319    GT:AD:DP:GQ:PL    1/1:0,12:12:12.03:137,12,0
21    47711139    rs57739931    GC    G    275.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=143.4375;IndelType=D;MQ=54.32;MQ0=0;QD=21.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YBEY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329319    GT:AD:DP:GQ:PL    1/1:3,10:13:24.08:317,24,0
21    47711229    rs2276257    A    G    2002.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.34;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YBEY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329319    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2036,150,0
21    47716230    rs1888539    T    C    274.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C21orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291691    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
21    47722391    rs1556337    A    G    243.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=30.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YBEY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329319    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:276,21,0
21    47722578    rs1974171    G    C    63.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YBEY;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329319    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:95,9,0
21    47734659    rs13047478    G    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.3;SNPEFF_AMINO_ACID_CHANGE=P156S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47734630_47734794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C21orf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417060    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:77,6,0
21    47737231    .    C    T    148.43    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.07;MQ0=0;MQRankSum=1.093;QD=11.42;ReadPosRankSum=1.656;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_21_47737122_47737262;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C21orf58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397679    GT:AD:DP:GQ:PL    0/1:6,7:13:99:178,0,180
21    47744037    rs113616556    CG    C    119.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=6;HaplotypeScore=26.1925;IndelType=D;MQ=57.52;MQ0=0;QD=23.85;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C21orf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291691    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:161,15,0
21    47777063    rs2839223    G    A    1395.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.99;MQ0=0;QD=30.35;SNPEFF_AMINO_ACID_CHANGE=G691E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47776889_47777106;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337772    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1429,108,0
21    47777222    rs2839224    A    G    545.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466474    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:579,42,0
21    47783796    rs8131546    T    C    1760.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=29.35;SNPEFF_AMINO_ACID_CHANGE=A852;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47783395_47783849;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359568    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1794,147,0
21    47786449    rs9637173    T    A    1160.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337772    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1194,90,0
21    47786494    rs2839226    C    T    1608.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=34.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337772    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1642,117,0
21    47786817    rs2839228    C    G    3540.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.382;DB;DP=102;Dels=0.0;FS=5.332;HRun=0;HaplotypeScore=0.9995;MQ=59.77;MQ0=0;MQRankSum=1.382;QD=34.71;ReadPosRankSum=0.962;SNPEFF_AMINO_ACID_CHANGE=L976;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47786499_47787054;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359568    GT:AD:DP:GQ:PL    1/1:1,100:102:99:3541,233,0
21    47787002    rs6518289    T    C    1655.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DB;DP=58;Dels=0.0;FS=5.283;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=1.176;QD=28.54;ReadPosRankSum=-0.99;SNPEFF_AMINO_ACID_CHANGE=V1038A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47786499_47787054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359568    GT:AD:DP:GQ:PL    1/1:1,57:58:99:1688,110,0
21    47817247    rs62224222    C    T    336.41    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.878;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.391;QD=16.02;ReadPosRankSum=0.604;SNPEFF_AMINO_ACID_CHANGE=R1429C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47817179_47817408;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359568    GT:AD:DP:GQ:PL    0/1:9,12:21:99:366,0,272
21    47852151    rs5844270    A    AG    198.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=25.9953;IndelType=I;MQ=62.13;MQ0=0;QD=39.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482575    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
21    47858272    rs2051190    T    C    820.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359568    GT:AD:DP:GQ:PL    1/1:0,28:28:66.21:853,66,0
21    47860217    rs2073377    C    T    582.31    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.714;QD=34.25;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359568    GT:AD:DP:GQ:PL    1/1:1,16:17:15.04:615,15,0
21    47860641    rs72562368    G    GC    407.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=1;HaplotypeScore=27.6493;IndelType=I;MQ=60.0;MQ0=0;QD=40.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359568    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:450,30,0
21    47862624    rs2839262    A    G    212.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359568    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
21    47864560    rs5741839    CTTT    C    398.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.0;HRun=17;HaplotypeScore=160.2955;IndelType=D;MQ=50.2;MQ0=0;QD=14.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465356    GT:AD:DP:GQ:PL    1/1:13,10:26:50.11:440,50,0
21    47864575    .    TTTC    T    155.39    PASS    AB=0.857;AC=1;AF=0.50;AN=2;BaseQRankSum=1.954;DP=29;FS=24.123;HRun=0;HaplotypeScore=190.2918;IndelType=D;MQ=50.36;MQ0=0;MQRankSum=1.147;QD=5.18;ReadPosRankSum=3.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465356    GT:AD:DP:GQ:PL    0/1:25,5:29:99:194,0,184
21    47864813    rs2249970    C    T    496.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465356    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:530,39,0
21    47864823    rs2073381    G    C    505.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCNT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465356    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:538,39,0
21    47904569    rs2032111    G    A    450.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:484,39,0
21    47917047    rs11315869    CT    C    3558.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;FS=0.0;HRun=8;HaplotypeScore=357.5297;IndelType=D;MQ=60.26;MQ0=0;QD=26.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:9,124:133:99:3559,370,0
21    47917170    rs2839292    G    A    704.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=58.78;MQ0=0;QD=37.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:0,19:19:54.18:737,54,0
21    47931245    rs1029262    A    G    621.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:655,48,0
21    47931684    rs1023356    G    A    83.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:115,9,0
21    47954727    rs2839308    G    A    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
21    47957322    .    G    C    38.73    HaplotypeScoreFilter13;QDFilter2    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.911;DP=74;Dels=0.0;FS=47.474;HRun=1;HaplotypeScore=22.431;MQ=50.04;MQ0=0;MQRankSum=-4.606;QD=0.52;ReadPosRankSum=1.718;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    0/1:57,16:74:68.72:69,0,1747
21    47958657    rs2839313    C    T    112.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:145,12,0
21    47961634    rs2070434    T    C    2646.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9332;MQ=59.74;MQ0=0;QD=29.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:0,89:89:99:2679,214,0
21    47966977    rs16979358    C    T    327.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.929;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3649;MQ=59.34;MQ0=0;MQRankSum=0.055;QD=9.35;ReadPosRankSum=-1.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473752    GT:AD:DP:GQ:PL    0/1:20,15:35:99:357,0,548
21    47971539    rs2255526    G    A    986.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435722    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1020,75,0
21    47973936    rs145885495    C    T    85.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457905    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
21    47974582    rs1107065    A    G    134.92    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.717;QD=12.27;ReadPosRankSum=-0.825;SNPEFF_AMINO_ACID_CHANGE=T1019;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_47974488_47974609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000427143    GT:AD:DP:GQ:PL    0/1:5,6:11:99:165,0,127
21    47976115    rs75843712    A    G    389.37    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=2.142;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.54;QD=12.56;ReadPosRankSum=0.781;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    0/1:18,13:31:99:419,0,651
21    47978321    rs77637493    G    GC    183.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=1;HaplotypeScore=16.0126;IndelType=I;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427143    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:225,15,0
21    47980570    rs2070429    A    G    579.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427143    GT:AD:DP:GQ:PL    1/1:0,19:19:48.14:613,48,0
21    47980760    rs2839324    T    G    107.55    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.533;DB;DP=13;Dels=0.0;FS=4.15;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.978;QD=8.27;ReadPosRankSum=2.313;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427143    GT:AD:DP:GQ:PL    0/1:8,5:13:99:138,0,290
21    47983657    rs762253    G    A    356.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481883    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:389,30,0
21    47983979    rs79694455    C    T    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.82;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481883    GT:AD:DP:GQ:PL    0/1:2,2:4:64.25:69,0,64
21    47986633    rs3819044    C    A    2317.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7633;MQ=58.75;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2351,184,0
21    47987167    rs2839337    T    C    246.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.265;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.854;QD=13.71;ReadPosRankSum=1.148;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIP2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318711    GT:AD:DP:GQ:PL    0/1:9,9:18:99:277,0,321
21    48022033    rs2839355    C    T    43.97    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291700    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:74,0,32
21    48022230    rs1051169    C    G    521.19    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.584;DB;DP=46;Dels=0.0;FS=1.143;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.166;QD=11.33;ReadPosRankSum=0.299;SNPEFF_AMINO_ACID_CHANGE=L33;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_48022191_48022329;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291700    GT:AD:DP:GQ:PL    0/1:26,20:46:99:551,0,891
21    48022375    rs2186358    C    A    196.36    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.274;DB;DP=26;Dels=0.0;FS=2.207;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.538;QD=7.55;ReadPosRankSum=-0.311;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=S100B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291700    GT:AD:DP:GQ:PL    0/1:16,10:26:99:226,0,536
21    48063387    rs113903382    C    CA    297.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.819;DB;DP=41;FS=0.0;HRun=17;HaplotypeScore=380.3557;IndelType=I;MQ=43.02;MQ0=0;MQRankSum=-0.567;QD=7.26;ReadPosRankSum=-0.693;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291705    GT:AD:DP:GQ:PL    1/1:27,6:41:36.78:340,37,0
21    48063476    rs10854485    C    G    1702.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6803;MQ=53.28;MQ0=0;QD=29.35;SNPEFF_AMINO_ACID_CHANGE=A23;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_21_48063447_48063551;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000291705    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1735,141,0
21    48063735    rs7276092    G    C    48.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291705    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
21    48068728    rs2245760    G    A    113.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=22.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291705    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:146,12,0
21    48072628    rs62225735    A    G    122.54    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.541;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.272;QD=4.9;ReadPosRankSum=-1.664;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334494    GT:AD:DP:GQ:PL    0/1:18,7:25:99:153,0,663
21    48078611    rs2070436    G    A    155.57    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.524;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=11.11;ReadPosRankSum=0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRMT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291705    GT:AD:DP:GQ:PL    0/1:7,7:14:99:186,0,191
22    16159060    rs72613662    G    A    3637.91    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;DB;DP=161;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=34.65;MQ0=54;MQRankSum=1.7;QD=22.6;ReadPosRankSum=-0.955;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000525.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383146    GT:AD:DP:GQ:PL    1/1:53,108:161:99:3638,259,0
22    16159158    .    A    G    424.48    MQFilter40    AC=2;AF=1.00;AN=2;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=26.53;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000525.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383146    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:457,42,0
22    16255865    .    G    T    276.14    MQFilter40;QDFilter2    AB=0.798;AC=1;AF=0.50;AN=2;BaseQRankSum=1.306;DP=198;Dels=0.0;FS=2.958;HRun=0;HaplotypeScore=1.748;MQ=18.56;MQ0=41;MQRankSum=-0.301;QD=1.39;ReadPosRankSum=0.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:158,40:198:99:306,0,2465
22    16256512    .    T    C    521.51    MQFilter40    AB=0.761;AC=1;AF=0.50;AN=2;BaseQRankSum=4.329;DP=245;DS;Dels=0.0;FS=4.104;HRun=0;HaplotypeScore=0.6651;MQ=18.98;MQ0=62;MQRankSum=0.267;QD=2.13;ReadPosRankSum=1.01;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:185,58:245:99:552,0,1995
22    16256578    .    G    T    43.70    MQFilter40;QDFilter2    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=0.585;DP=250;DS;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.8512;MQ=27.07;MQ0=8;MQRankSum=-0.13;QD=0.17;ReadPosRankSum=1.532;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:224,26:250:73.70:74,0,5003
22    16256822    .    C    T    157.52    MQFilter40    AB=0.233;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.393;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=16.83;MQ0=7;MQRankSum=-1.014;QD=5.25;ReadPosRankSum=-0.527;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:7,23:30:35.14:188,0,35
22    16266920    .    C    CAG    311.75    QDFilter2    AB=0.909;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.785;DP=56;DS;FS=6.021;HRun=0;HaplotypeScore=178.0245;IndelType=I;MQ=12.33;MQ0=85;MQRankSum=0.034;QD=1.25;ReadPosRankSum=0.125;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:225,25:56:99:351,0,1642
22    16269779    .    A    G    145.19    MQFilter40    AC=2;AF=1.00;AN=2;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.49;MQ0=0;QD=20.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:178,15,0
22    16269829    rs114833654    T    A    431.54    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.884;DB;DP=30;Dels=0.0;FS=0.0;HRun=14;HaplotypeScore=5.3199;MQ=32.42;MQ0=0;MQRankSum=2.646;QD=14.38;ReadPosRankSum=4.551;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:12,18:30:99:462,0,233
22    16269985    .    C    G    38.17    MQFilter40;QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=1.318;DP=133;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.02;MQ0=116;MQRankSum=-0.264;QD=0.29;ReadPosRankSum=1.739;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:116,17:133:68.17:68,0,223
22    16277923    .    T    G    33.77    MQFilter40;QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DP=173;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=3.93;MQ0=170;MQRankSum=0.736;QD=0.2;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:151,22:173:18.64:64,0,19
22    16278057    rs146119771    G    A    49.93    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=28;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=2.9927;MQ=21.19;MQ0=18;MQRankSum=0.546;QD=1.78;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:21,7:28:79.92:80,0,163
22    16287156    .    T    C    204.57    MQFilter40    AB=0.681;AC=1;AF=0.50;AN=2;BaseQRankSum=4.068;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.81;MQ0=4;MQRankSum=-4.405;QD=2.96;ReadPosRankSum=-1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343518    GT:AD:DP:GQ:PL    0/1:47,22:69:99:235,0,1625
22    16287372    .    C    T    767.13    MQFilter40    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=1.094;DP=249;DS;Dels=0.0;FS=1.763;HRun=0;HaplotypeScore=4.2216;MQ=21.76;MQ0=90;MQRankSum=-1.725;QD=3.08;ReadPosRankSum=-0.218;SNPEFF_AMINO_ACID_CHANGE=V135I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_16287254_16287556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POTEH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359587    GT:AD:DP:GQ:PL    0/1:175,73:249:99:797,0,1937
22    16414200    .    A    G    151.14    MQFilter40;QDFilter2    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.733;DP=156;Dels=0.0;FS=38.904;HRun=0;HaplotypeScore=0.0;MQ=31.78;MQ0=60;MQRankSum=-8.355;QD=0.97;ReadPosRankSum=1.518;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-60G3.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412729    GT:AD:DP:GQ:PL    0/1:55,101:156:99:181,0,1611
22    16414245    .    A    G    243.21    MQFilter40;QDFilter2    AB=0.815;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.622;DP=195;Dels=0.0;FS=1.832;HRun=1;HaplotypeScore=7.415;MQ=29.72;MQ0=42;MQRankSum=-1.231;QD=1.25;ReadPosRankSum=-1.559;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-60G3.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412729    GT:AD:DP:GQ:PL    0/1:159,36:195:99:273,0,2889
22    16414348    .    T    C    376.27    MQFilter40    AB=0.284;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.618;DP=95;Dels=0.0;FS=4.077;HRun=0;HaplotypeScore=0.9578;MQ=20.35;MQ0=34;MQRankSum=-2.431;QD=3.96;ReadPosRankSum=-0.238;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-60G3.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412729    GT:AD:DP:GQ:PL    0/1:27,68:95:99:406,0,421
22    16414370    .    C    T    176.55    HaplotypeScoreFilter13;MQFilter40    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.444;DP=84;Dels=0.0;FS=2.336;HRun=0;HaplotypeScore=34.6195;MQ=19.29;MQ0=31;MQRankSum=1.727;QD=2.1;ReadPosRankSum=-0.706;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-60G3.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412729    GT:AD:DP:GQ:PL    0/1:52,32:84:99:207,0,492
22    16650488    .    G    A    136.23    MQFilter40;QDFilter2    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.119;DP=120;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=13.77;MQ0=99;MQRankSum=0.733;QD=1.14;ReadPosRankSum=-1.659;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ZNF72P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425869    GT:AD:DP:GQ:PL    0/1:91,29:120:99:166,0,336
22    16871080    rs140374    C    A    80.34    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=13;Dels=0.0;FS=2.632;HRun=0;HaplotypeScore=5.9494;MQ=46.03;MQ0=0;MQRankSum=-0.929;QD=6.18;ReadPosRankSum=1.599;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:8,5:13:99:110,0,201
22    16871133    rs131537    A    G    168.16    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.601;DB;DP=19;Dels=0.0;FS=1.778;HRun=0;HaplotypeScore=4.9486;MQ=45.01;MQ0=0;MQRankSum=-1.528;QD=8.85;ReadPosRankSum=1.115;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:11,8:19:99:198,0,274
22    16871137    rs131538    A    G    486.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=6.9047;MQ=43.62;MQ0=0;QD=30.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    1/1:0,16:16:42.12:520,42,0
22    16871144    rs138121094    C    T    32.40    QDFilter2    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=1.642;DB;DP=17;Dels=0.0;FS=6.726;HRun=0;HaplotypeScore=0.9958;MQ=45.41;MQ0=0;MQRankSum=-2.095;QD=1.91;ReadPosRankSum=-1.302;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:13,4:17:62.39:62,0,383
22    16871318    rs131539    A    G    334.47    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.862;DB;DP=35;Dels=0.0;FS=1.527;HRun=0;HaplotypeScore=0.0;MQ=50.02;MQ0=0;MQRankSum=1.754;QD=9.56;ReadPosRankSum=0.018;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:18,17:35:99:364,0,416
22    16871330    rs75899964    C    T    159.87    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.837;DB;DP=35;Dels=0.0;FS=13.921;HRun=1;HaplotypeScore=0.0;MQ=49.14;MQ0=0;MQRankSum=-4.107;QD=4.57;ReadPosRankSum=0.292;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:23,12:35:99:190,0,649
22    16871337    rs113347352    T    A    159.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.473;DB;DP=36;Dels=0.0;FS=6.306;HRun=0;HaplotypeScore=0.0;MQ=48.68;MQ0=0;MQRankSum=-4.312;QD=4.42;ReadPosRankSum=0.99;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:24,12:36:99:189,0,650
22    16871346    rs112185873    C    T    141.80    PASS    AB=0.725;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.151;DB;DP=40;Dels=0.0;FS=9.049;HRun=0;HaplotypeScore=1.5779;MQ=50.76;MQ0=0;MQRankSum=-4.301;QD=3.55;ReadPosRankSum=1.454;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:29,11:40:99:172,0,925
22    16871440    rs131540    A    C    419.93    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.097;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.61;MQ0=0;MQRankSum=0.419;QD=14.0;ReadPosRankSum=1.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:13,17:30:99:450,0,384
22    16871463    rs62223294    G    A    150.96    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.815;QD=8.39;ReadPosRankSum=0.362;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=ABCD1P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399687    GT:AD:DP:GQ:PL    0/1:11,7:18:99:181,0,397
22    16909895    .    AAC    A    227.61    QDFilter2    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=5.889;DP=113;FS=10.333;HRun=0;HaplotypeScore=402.319;IndelType=D;MQ=38.76;MQ0=25;MQRankSum=-5.326;QD=1.48;ReadPosRankSum=3.718;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PABPC1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426076    GT:AD:DP:GQ:PL    0/1:131,23:113:99:267,0,4769
22    16910069    rs5746954    G    A    154.34    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.52;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=43.03;MQ0=1;MQRankSum=-1.246;QD=12.86;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PABPC1P9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426076    GT:AD:DP:GQ:PL    0/1:4,8:12:99:184,0,126
22    16914274    rs5748823    T    A    299.89    MQFilter40    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.696;DB;DP=86;Dels=0.0;FS=2.667;HRun=0;HaplotypeScore=8.5136;MQ=35.7;MQ0=28;MQRankSum=-6.152;QD=3.49;ReadPosRankSum=-0.868;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:32,54:86:99:330,0,1057
22    16914283    rs138180499    AC    A    209.40    PASS    AB=0.802;AC=1;AF=0.50;AN=2;BaseQRankSum=4.165;DB;DP=43;FS=0.0;HRun=1;HaplotypeScore=218.4011;IndelType=D;MQ=33.98;MQ0=26;MQRankSum=-3.269;QD=2.59;ReadPosRankSum=-1.567;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:61,20:43:99:248,0,1488
22    16914306    rs9680745    A    G    138.82    MQFilter40;QDFilter2    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=3.974;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3286;MQ=34.78;MQ0=17;MQRankSum=-3.272;QD=1.96;ReadPosRankSum=1.732;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:42,20:71:99:169,0,1058
22    16915280    rs112531028    A    ATT    502.80    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=29;FS=0.0;HRun=11;HaplotypeScore=135.6738;IndelType=I;MQ=51.53;MQ0=1;MQRankSum=-1.049;QD=16.76;ReadPosRankSum=-1.244;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:16,14:29:99:542,0,263
22    16918898    rs3876026    G    A    44.34    MQFilter40    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.74;MQ0=4;MQRankSum=0.406;QD=4.43;ReadPosRankSum=-0.406;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:6,4:10:71.66:74,0,72
22    16955188    rs9618025    G    A    40.68    MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.65;MQ0=1;MQRankSum=0.55;QD=5.09;ReadPosRankSum=1.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:5,3:8:70.67:71,0,74
22    16957339    rs7287736    T    C    72.34    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.7651;MQ=41.45;MQ0=2;MQRankSum=-3.021;QD=3.01;ReadPosRankSum=0.46;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:11,13:24:99:102,0,392
22    16957376    .    A    C    106.96    MQFilter40;QDFilter2    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=1.366;DP=76;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=33.06;MQ0=8;MQRankSum=-2.118;QD=1.41;ReadPosRankSum=-1.901;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:58,18:76:99:137,0,1416
22    16957382    rs77957865    A    G    86.82    MQFilter40;QDFilter2    AB=0.767;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.294;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=31.13;MQ0=9;MQRankSum=-1.739;QD=1.01;ReadPosRankSum=-1.186;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:66,20:86:99:117,0,1547
22    16957403    .    T    A    179.61    MQFilter40;QDFilter2    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=1.57;DP=122;Dels=0.0;FS=5.824;HRun=0;HaplotypeScore=1.79;MQ=29.35;MQ0=21;MQRankSum=-2.27;QD=1.47;ReadPosRankSum=1.507;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:87,35:122:99:210,0,1789
22    16957428    rs74959702    T    C    195.21    MQFilter40;QDFilter2    AB=0.715;AC=1;AF=0.50;AN=2;BaseQRankSum=0.26;DB;DP=144;Dels=0.0;FS=6.233;HRun=0;HaplotypeScore=1.5661;MQ=30.06;MQ0=29;MQRankSum=-2.746;QD=1.36;ReadPosRankSum=1.653;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LA16c-68B10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421957    GT:AD:DP:GQ:PL    0/1:103,41:144:99:225,0,2112
22    17029120    rs10775699    G    A    44.98    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.8;MQ0=0;MQRankSum=0.736;QD=14.99;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:75,0,23
22    17029410    rs9306210    C    A    831.54    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=39.29;MQ0=1;QD=25.99;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,32:32:69.18:865,69,0
22    17029525    rs9680556    T    G    98.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=19.36;MQ0=1;QD=8.96;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:12.02:131,12,0
22    17054155    rs4008589    T    C    392.21    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.93;MQ0=4;QD=24.51;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KB-67B5.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454360    GT:AD:DP:GQ:PL    1/1:0,16:16:33.11:425,33,0
22    17055458    rs35893428    G    A    158.01    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=1.361;DB;DP=22;Dels=0.0;FS=2.017;HRun=1;HaplotypeScore=0.0;MQ=51.24;MQ0=1;MQRankSum=0.619;QD=7.18;ReadPosRankSum=1.526;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KB-67B5.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454360    GT:AD:DP:GQ:PL    0/1:16,6:22:99:188,0,428
22    17055569    rs3729688    T    G    130.79    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=54.86;MQ0=1;MQRankSum=0.573;QD=13.08;ReadPosRankSum=-1.001;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=KB-67B5.12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454360    GT:AD:DP:GQ:PL    0/1:3,7:10:99:161,0,102
22    17072483    rs2236639    A    G    3474.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=40.18;MQ0=4;QD=26.52;SNPEFF_AMINO_ACID_CHANGE=W320R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17071667_17073700;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT8L2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359963    GT:AD:DP:GQ:PL    1/1:0,129:131:99:3474,301,0
22    17073066    rs5747988    A    G    1219.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.43;MQ0=0;QD=27.11;SNPEFF_AMINO_ACID_CHANGE=A125;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17071667_17073700;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCT8L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359963    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1253,105,0
22    17083152    rs112886011    G    A    40.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.52;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC005301.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400593    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
22    17119450    rs10427681    G    A    618.83    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.399;DB;DP=39;Dels=0.0;FS=1.979;HRun=0;HaplotypeScore=0.0;MQ=50.59;MQ0=0;MQRankSum=2.291;QD=15.87;ReadPosRankSum=1.463;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC005301.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383140    GT:AD:DP:GQ:PL    0/1:17,22:39:99:649,0,363
22    17128908    rs9605001    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC005301.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000383140    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
22    17156280    rs6518594    A    G    4798.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.7;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD62P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423580    GT:AD:DP:GQ:PL    1/1:0,144:144:99:4799,376,0
22    17160293    rs35747326    CT    C    71.87    PASS    AB=0.784;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=26;FS=0.0;HRun=4;HaplotypeScore=70.0186;IndelType=D;MQ=46.86;MQ0=2;MQRankSum=0.037;QD=2.48;ReadPosRankSum=-1.901;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ANKRD62P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338526    GT:AD:DP:GQ:PL    0/1:21,8:26:99:111,0,655
22    17289118    rs2072466    C    T    172.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XKR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331428    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
22    17326668    rs175154    A    G    237.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.99;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:271,21,0
22    17326914    rs165927    G    A    812.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,22:23:63.21:846,63,0
22    17327068    rs165588    A    G    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
22    17378257    .    C    G    167.90    MQFilter40;QDFilter2    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.376;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8024;MQ=12.6;MQ0=37;MQRankSum=1.454;QD=1.95;ReadPosRankSum=1.373;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006548.19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427470    GT:AD:DP:GQ:PL    0/1:58,28:86:99:198,0,104
22    17384957    rs11912658    G    A    252.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.19;MQ0=0;QD=36.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006548.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458718    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:285,21,0
22    17385050    rs4532046    G    A    1819.08    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.417;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.933;MQ=52.73;MQ0=3;MQRankSum=1.606;QD=30.32;ReadPosRankSum=-1.606;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006548.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458718    GT:AD:DP:GQ:PL    1/1:4,56:60:99:1852,141,0
22    17385088    rs2385761    G    A    3342.97    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.289;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=55.4;MQ0=3;MQRankSum=1.168;QD=32.77;ReadPosRankSum=0.842;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006548.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458718    GT:AD:DP:GQ:PL    1/1:5,96:102:99:3343,217,0
22    17385146    rs4006152    T    C    5046.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=54.34;MQ0=0;QD=31.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006548.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458718    GT:AD:DP:GQ:PL    1/1:0,157:158:99:5047,373,0
22    17385259    rs11913118    A    G    2902.10    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;DB;DP=163;Dels=0.0;FS=4.567;HRun=2;HaplotypeScore=1.3302;MQ=34.28;MQ0=40;MQRankSum=1.291;QD=17.8;ReadPosRankSum=1.027;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006548.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458718    GT:AD:DP:GQ:PL    1/1:40,122:163:99:2935,210,0
22    17385346    rs4006153    T    C    1902.19    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=2.031;DB;DP=158;Dels=0.0;FS=5.791;HRun=1;HaplotypeScore=2.6147;MQ=24.83;MQ0=58;MQRankSum=-0.153;QD=11.96;ReadPosRankSum=0.031;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006548.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458718    GT:AD:DP:GQ:PL    1/1:55,103:158:80.14:1935,80,0
22    17385537    rs4006154    A    G    2538.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.007;DB;DP=90;Dels=0.0;FS=3.606;HRun=0;HaplotypeScore=3.4446;MQ=44.39;MQ0=1;MQRankSum=-0.201;QD=28.21;ReadPosRankSum=1.128;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC006548.20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458718    GT:AD:DP:GQ:PL    1/1:1,89:90:99:2571,171,0
22    17394989    rs1860945    T    C    117.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV2OR22-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523309    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:150,12,0
22    17395610    rs737936    G    A    211.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.73;MQ0=0;QD=30.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV2OR22-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523309    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:245,21,0
22    17395724    rs17444874    C    G    664.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=31.66;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV2OR22-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523309    GT:AD:DP:GQ:PL    1/1:0,21:21:60.17:698,60,0
22    17395838    .    A    AAT    2566.62    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-7.133;DP=90;FS=2.806;HRun=0;HaplotypeScore=258.5649;IndelType=I;MQ=54.65;MQ0=0;MQRankSum=-0.132;QD=28.52;ReadPosRankSum=0.268;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV2OR22-4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000523309    GT:AD:DP:GQ:PL    0/1:43,47:90:99:2606,0,1679
22    17414998    rs5746937    G    A    113.81    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=0.55;QD=16.26;ReadPosRankSum=-0.937;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGKV1OR22-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000521497    GT:AD:DP:GQ:PL    0/1:3,4:7:99:144,0,103
22    17446157    rs1541529    G    T    50.45    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.566;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.382;QD=4.2;ReadPosRankSum=0.382;SNPEFF_AMINO_ACID_CHANGE=A430;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17446068_17446158;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400588    GT:AD:DP:GQ:PL    0/1:9,3:12:80.45:80,0,261
22    17446991    rs4819925    C    T    442.52    PASS    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=2.657;DB;DP=49;Dels=0.0;FS=1.145;HRun=2;HaplotypeScore=1.9873;MQ=60.0;MQ0=0;MQRankSum=-0.954;QD=9.03;ReadPosRankSum=0.934;SNPEFF_AMINO_ACID_CHANGE=K429;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17446990_17447254;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400588    GT:AD:DP:GQ:PL    0/1:30,19:49:99:473,0,987
22    17449076    rs5748768    C    G    140.18    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=20.03;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAB4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400588    GT:AD:DP:GQ:PL    0/1:2,5:7:64.22:170,0,64
22    17566206    rs2270241    G    T    35.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
22    17582776    rs17807076    C    T    274.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459971    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:308,24,0
22    17586471    rs2241046    C    T    3538.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.97;MQ0=0;QD=33.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3539,274,0
22    17586583    rs2241047    C    G    1143.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.32;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1176,90,0
22    17586595    rs34484815    G    A    969.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=50.43;MQ0=0;QD=30.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    1/1:0,32:32:81.22:1002,81,0
22    17586609    rs144979983    GT    G    853.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=1;HaplotypeScore=346.6112;IndelType=D;MQ=48.02;MQ0=0;QD=37.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    1/1:0,23:23:68.57:895,69,0
22    17586614    rs35078252    G    C    129.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.23;MQ0=0;QD=6.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    1/1:0,20:20:20.93:163,21,0
22    17586631    rs4819959    G    A    591.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.89;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:625,48,0
22    17586715    rs66578396    ATCAC    A    742.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=101.0298;IndelType=D;MQ=51.42;MQ0=0;QD=49.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:784,42,0
22    17589209    rs879577    C    T    496.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.47;SNPEFF_AMINO_ACID_CHANGE=A315V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17589197_17590825;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425985    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:530,42,0
22    17589567    rs879575    C    T    407.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.34;SNPEFF_AMINO_ACID_CHANGE=I434;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17589197_17590825;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425985    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:440,33,0
22    17590269    rs4819555    C    T    395.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;QD=30.43;SNPEFF_AMINO_ACID_CHANGE=P668;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17589197_17590825;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425985    GT:AD:DP:GQ:PL    1/1:0,13:13:33.10:429,33,0
22    17600148    rs9605220    A    G    143.58    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.66;QD=11.04;ReadPosRankSum=0.377;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=IL17RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319363    GT:AD:DP:GQ:PL    0/1:6,7:13:99:174,0,177
22    17602839    rs5992629    G    A    169.60    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-2.181;QD=15.42;ReadPosRankSum=0.143;SNPEFF_AMINO_ACID_CHANGE=S7;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17602485_17602929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=AC006946.15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000441544    GT:AD:DP:GQ:PL    0/1:5,6:11:99:200,0,141
22    17619378    rs2244682    T    C    817.07    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=4.23;DB;DP=54;Dels=0.0;FS=3.901;HRun=0;HaplotypeScore=2.6939;MQ=57.92;MQ0=0;MQRankSum=-0.05;QD=15.13;ReadPosRankSum=1.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155674    GT:AD:DP:GQ:PL    0/1:24,26:54:99:847,0,678
22    17623880    rs34058953    G    GC    121.16    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.898;DB;DP=15;FS=0.0;HRun=4;HaplotypeScore=34.6751;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=0.184;QD=8.08;ReadPosRankSum=-0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000155674    GT:AD:DP:GQ:PL    0/1:10,5:15:99:160,0,295
22    17662163    rs7290147    C    G    71.29    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=11.88;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399837    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,104
22    17662591    rs11703884    C    G    336.39    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.46;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.248;QD=15.29;ReadPosRankSum=-0.394;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469063    GT:AD:DP:GQ:PL    0/1:11,11:22:99:366,0,377
22    17662679    rs41282461    C    T    603.08    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=37;Dels=0.0;FS=5.865;HRun=0;HaplotypeScore=1.9978;MQ=58.74;MQ0=0;MQRankSum=2.569;QD=16.3;ReadPosRankSum=0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469063    GT:AD:DP:GQ:PL    0/1:13,23:37:99:633,0,399
22    17662699    rs58754958    A    G    640.97    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.258;DB;DP=43;Dels=0.02;FS=9.908;HRun=2;HaplotypeScore=1.933;MQ=58.95;MQ0=0;MQRankSum=-0.554;QD=14.57;ReadPosRankSum=0.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469063    GT:AD:DP:GQ:PL    0/1:18,25:43:99:671,0,533
22    17662793    rs7289170    A    G    452.22    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.73;MQ0=0;MQRankSum=0.353;QD=9.42;ReadPosRankSum=0.956;SNPEFF_AMINO_ACID_CHANGE=Y212;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17662710_17662912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330232    GT:AD:DP:GQ:PL    0/1:27,21:48:99:482,0,888
22    17662917    rs3764846    G    C    213.74    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.582;DB;DP=24;Dels=0.0;FS=1.999;HRun=1;HaplotypeScore=1.9367;MQ=59.03;MQ0=0;MQRankSum=0.888;QD=8.91;ReadPosRankSum=0.276;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469063    GT:AD:DP:GQ:PL    0/1:16,8:24:99:244,0,539
22    17669151    rs2231496    C    T    334.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480276    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
22    17669406    rs9619005    G    C    77.17    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=12.86;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480276    GT:AD:DP:GQ:PL    0/1:3,3:6:99:107,0,109
22    17684312    rs5747021    T    A    107.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441548    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:140,12,0
22    17684344    rs2231489    C    T    59.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.876;QD=6.56;ReadPosRankSum=-1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441548    GT:AD:DP:GQ:PL    0/1:4,5:9:89.05:89,0,92
22    17684355    rs5747022    A    G    263.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441548    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:296,24,0
22    17690409    rs362129    G    A    489.33    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.113;DB;DP=43;Dels=0.0;FS=1.288;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.662;QD=11.38;ReadPosRankSum=-0.239;SNPEFF_AMINO_ACID_CHANGE=N11;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_17690246_17690488;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000449907    GT:AD:DP:GQ:PL    0/1:24,19:43:99:519,0,566
22    17956264    rs9605304    A    G    127.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=25.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342247    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:160,12,0
22    17956887    rs2522297    T    C    167.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
22    17978311    rs9617589    A    G    520.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    1/1:0,16:16:48.14:553,48,0
22    17978346    rs56268553    T    C    234.94    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=3.389;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.452;QD=10.21;ReadPosRankSum=-1.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    0/1:15,8:23:99:265,0,504
22    17978355    rs56141127    C    A    223.94    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.602;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=-0.262;QD=8.96;ReadPosRankSum=-0.612;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    0/1:17,8:25:99:254,0,573
22    17978600    rs7284169    G    C    457.98    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.682;DB;DP=55;Dels=0.0;FS=4.33;HRun=0;HaplotypeScore=2.9067;MQ=59.16;MQ0=0;MQRankSum=-2.105;QD=8.33;ReadPosRankSum=0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497534    GT:AD:DP:GQ:PL    0/1:37,18:55:99:488,0,1224
22    17979626    rs17808463    C    T    473    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.028;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=1.788;QD=13.14;ReadPosRankSum=0.142;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497534    GT:AD:DP:GQ:PL    0/1:18,18:36:99:503,0,551
22    18016508    rs174335    G    A    44.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.81;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    0/1:1,2:3:28.77:74,0,29
22    18018516    rs1296792    C    T    358.13    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=1.492;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;MQRankSum=-0.35;QD=10.85;ReadPosRankSum=-1.492;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    0/1:20,13:33:99:388,0,635
22    18018940    rs1296793    T    C    365.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.149;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4972;MQ=60.0;MQ0=0;MQRankSum=0.073;QD=13.04;ReadPosRankSum=-0.607;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342247    GT:AD:DP:GQ:PL    0/1:14,14:28:99:395,0,465
22    18021604    rs1296794    C    T    676.95    PASS    AB=0.377;AC=1;AF=0.50;AN=2;BaseQRankSum=1.033;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=-0.063;QD=12.77;ReadPosRankSum=0.822;SNPEFF_AMINO_ACID_CHANGE=P491L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18021528_18021656;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400585    GT:AD:DP:GQ:PL    0/1:20,33:53:99:707,0,459
22    18021760    rs1296795    A    G    512.27    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.82;DB;DP=38;Dels=0.0;FS=3.132;HRun=0;HaplotypeScore=0.9995;MQ=59.39;MQ0=0;MQRankSum=1.057;QD=13.48;ReadPosRankSum=0.499;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342247    GT:AD:DP:GQ:PL    0/1:17,21:38:99:542,0,562
22    18027656    rs174342    A    G    82.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=27.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
22    18027817    rs112910709    CTT    C    120.08    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.532;DB;DP=24;FS=3.09;HRun=16;HaplotypeScore=159.3632;IndelType=D;MQ=52.87;MQ0=0;MQRankSum=0.354;QD=5.0;ReadPosRankSum=-0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    0/1:7,8:24:1:158,0,1
22    18030096    rs67518338    TA    T    73.07    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.277;DB;DP=33;FS=0.0;HRun=17;HaplotypeScore=175.1982;IndelType=D;MQ=54.91;MQ0=0;MQRankSum=-0.154;QD=2.21;ReadPosRankSum=2.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    0/1:21,10:33:99:112,0,194
22    18031544    rs113837    A    G    170.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:203,18,0
22    18032459    rs72115087    GTTTTTTTTTTTTTTT    G    1549.04    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.678;DB;DP=26;FS=0.0;HRun=28;HaplotypeScore=380.7755;IndelType=D;MQ=33.65;MQ0=0;MQRankSum=-0.226;QD=59.58;ReadPosRankSum=2.937;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CECR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262608    GT:AD:DP:GQ:PL    0/1:8,14:26:99:1588,0,1302
22    18084001    rs5747254    T    G    1041.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=40.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6V1E1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253413    GT:AD:DP:GQ:PL    1/1:0,26:26:78.26:1074,78,0
22    18171650    rs5013026    C    T    76.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.96;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317582    GT:AD:DP:GQ:PL    0/1:3,4:7:98.19:107,0,98
22    18178859    rs2257083    C    T    112.27    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.408;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.387;QD=9.36;ReadPosRankSum=-0.825;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464649    GT:AD:DP:GQ:PL    0/1:5,6:12:99:142,0,184
22    18184804    rs191188422    A    T    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317582    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
22    18209613    rs4488761    A    G    746.41    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.99;DB;DP=53;Dels=0.0;FS=2.441;HRun=1;HaplotypeScore=2.4866;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=14.08;ReadPosRankSum=0.961;SNPEFF_AMINO_ACID_CHANGE=S133;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18209443_18210466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538149    GT:AD:DP:GQ:PL    0/1:26,27:53:99:776,0,817
22    18209920    rs9306198    C    T    1454.11    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.031;DB;DP=120;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8864;MQ=59.54;MQ0=0;MQRankSum=0.067;QD=12.12;ReadPosRankSum=1.184;SNPEFF_AMINO_ACID_CHANGE=P198S;SNPEFF_CODON_CHANGE=Cct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18209443_18210428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCL2L13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337612    GT:AD:DP:GQ:PL    0/1:70,50:120:99:1484,0,2191
22    18218464    rs181382    T    C    82.24    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.689;QD=6.85;ReadPosRankSum=1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473439    GT:AD:DP:GQ:PL    0/1:7,5:12:99:112,0,257
22    18218475    rs181383    C    G    105.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=11.68;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473439    GT:AD:DP:GQ:PL    0/1:4,5:9:99:135,0,137
22    18222263    rs181390    A    G    291.86    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.813;DB;DP=17;Dels=0.0;FS=2.246;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.113;QD=17.17;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317361    GT:AD:DP:GQ:PL    0/1:6,11:17:99:322,0,166
22    18222665    rs181392    T    C    64.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.988;QD=10.74;ReadPosRankSum=0.406;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317361    GT:AD:DP:GQ:PL    0/1:3,3:6:94.44:94,0,105
22    18226521    rs738094    C    T    40.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.4;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317361    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:70,0,34
22    18232723    rs181404    G    C    32.21    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=8.05;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317361    GT:AD:DP:GQ:PL    0/1:1,3:4:33.98:62,0,34
22    18233000    rs181405    G    A    36.25    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=7.25;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BID;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317361    GT:AD:DP:GQ:PL    0/1:3,2:5:66.24:66,0,111
22    18273463    rs62238879    G    A    131.16    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=1.788;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=10.93;ReadPosRankSum=-0.529;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=XXbac-B461K10.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476405    GT:AD:DP:GQ:PL    0/1:5,7:12:99:161,0,147
22    18293503    .    T    C    679.07    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.601;DP=55;Dels=0.0;FS=2.316;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.648;QD=12.35;ReadPosRankSum=0.48;SNPEFF_AMINO_ACID_CHANGE=K1841R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18293469_18293579;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=XXbac-B461K10.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000441493    GT:AD:DP:GQ:PL    0/1:27,28:55:99:709,0,875
22    18317095    rs453005    T    C    532.95    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.548;DB;DP=50;Dels=0.0;FS=2.738;HRun=0;HaplotypeScore=0.5784;MQ=59.54;MQ0=0;MQRankSum=-0.403;QD=10.66;ReadPosRankSum=-0.755;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444520    GT:AD:DP:GQ:PL    0/1:26,23:50:99:563,0,766
22    18324564    rs750559    C    T    118.34    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;MQRankSum=1.517;QD=10.76;ReadPosRankSum=-0.956;SNPEFF_AMINO_ACID_CHANGE=R942H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18324441_18324783;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000383094    GT:AD:DP:GQ:PL    0/1:3,7:11:85.42:148,0,85
22    18370066    rs4819472    C    A    3549.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=59.2;MQ0=0;QD=32.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207726    GT:AD:DP:GQ:PL    1/1:0,110:110:99:3549,277,0
22    18379253    rs118175878    C    T    110.08    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.754;QD=15.73;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICAL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000207726    GT:AD:DP:GQ:PL    0/1:3,4:7:99:140,0,104
22    18571008    rs464385    G    A    421.97    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=27;Dels=0.0;FS=7.463;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.37;QD=15.63;ReadPosRankSum=-0.617;SNPEFF_AMINO_ACID_CHANGE=G362S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18570786_18571022;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PEX26;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399746    GT:AD:DP:GQ:PL    0/1:11,16:27:99:452,0,334
22    18655860    rs4819484    G    A    869.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.51;MQ0=7;QD=26.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215794    GT:AD:DP:GQ:PL    1/1:5,28:33:72.19:903,72,0
22    18717971    rs4145534    T    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.34;MQ0=3;QD=7.13;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342888    GT:AD:DP:GQ:PL    1/1:2,3:5:6.02:67,6,0
22    18717978    rs77274035    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.34;MQ0=3;QD=7.13;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342888    GT:AD:DP:GQ:PL    1/1:2,3:5:6.02:67,6,0
22    18718035    rs112845604    G    A    56.50    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=19.41;MQ0=2;QD=9.42;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342888    GT:AD:DP:GQ:PL    1/1:1,5:6:9:89,9,0
22    18769145    .    G    A    59.81    MQFilter40;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=1.829;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.367;MQ=29.36;MQ0=7;MQRankSum=-1.695;QD=0.88;ReadPosRankSum=2.097;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGT3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412448    GT:AD:DP:GQ:PL    0/1:57,11:68:89.80:90,0,1088
22    18769228    rs531659    G    A    874.91    MQFilter40    AB=0.557;AC=1;AF=0.50;AN=2;BaseQRankSum=0.735;DB;DP=97;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=35.39;MQ0=6;MQRankSum=1.043;QD=9.02;ReadPosRankSum=1.325;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGT3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412448    GT:AD:DP:GQ:PL    0/1:54,43:97:99:905,0,1020
22    18769319    rs61377324    C    T    74.73    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.245;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=40.55;MQ0=1;MQRankSum=-1.155;QD=3.11;ReadPosRankSum=0.175;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGT3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412448    GT:AD:DP:GQ:PL    0/1:18,6:24:99:105,0,560
22    18769324    rs141767387    C    A    42.06    QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.206;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=40.52;MQ0=1;MQRankSum=-1.775;QD=1.91;ReadPosRankSum=-0.289;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGT3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412448    GT:AD:DP:GQ:PL    0/1:17,5:22:72.05:72,0,540
22    18769349    .    G    C    31.19    MQFilter40    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.51;MQ0=0;MQRankSum=-2.899;QD=2.23;ReadPosRankSum=-0.354;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGT3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412448    GT:AD:DP:GQ:PL    0/1:10,4:14:61.18:61,0,364
22    18769616    .    C    T    30.21    MQFilter40;QDFilter2    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=0.275;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4328;MQ=15.02;MQ0=47;MQRankSum=0.539;QD=0.28;ReadPosRankSum=0.58;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGT3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412448    GT:AD:DP:GQ:PL    0/1:91,17:108:60.20:60,0,935
22    18769677    .    C    T    211.25    MQFilter40;QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=3.032;DP=158;Dels=0.0;FS=2.61;HRun=0;HaplotypeScore=0.8941;MQ=18.99;MQ0=47;MQRankSum=0.66;QD=1.34;ReadPosRankSum=1.499;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GGT3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412448    GT:AD:DP:GQ:PL    0/1:123,35:158:99:241,0,1670
22    18778584    rs3984302    A    G    217.39    MQFilter40    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.754;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=25.39;MQ0=3;MQRankSum=-2.888;QD=5.57;ReadPosRankSum=2.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC008132.14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437537    GT:AD:DP:GQ:PL    0/1:24,15:39:99:247,0,537
22    18778675    .    C    T    93.53    MQFilter40;QDFilter2    AB=0.867;AC=1;AF=0.50;AN=2;BaseQRankSum=1.292;DP=83;Dels=0.0;FS=6.292;HRun=0;HaplotypeScore=0.5784;MQ=21.42;MQ0=20;MQRankSum=1.713;QD=1.13;ReadPosRankSum=-0.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC008132.14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437537    GT:AD:DP:GQ:PL    0/1:72,11:83:99:124,0,881
22    18778789    rs76949370    G    T    93.11    MQFilter40    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.776;DB;DP=37;Dels=0.0;FS=2.737;HRun=1;HaplotypeScore=0.0;MQ=22.93;MQ0=8;MQRankSum=-2.684;QD=2.52;ReadPosRankSum=0.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC008132.14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437537    GT:AD:DP:GQ:PL    0/1:22,15:37:99:123,0,421
22    18778847    rs76443871    T    G    110.44    MQFilter40    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.14;MQ0=2;MQRankSum=-3.234;QD=4.8;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=AC008132.14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437537    GT:AD:DP:GQ:PL    0/1:13,10:23:99:140,0,321
22    18835221    rs62231276    A    G    1626.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=25.75;MQ0=25;QD=14.66;SNPEFF_AMINO_ACID_CHANGE=R259;SNPEFF_CODON_CHANGE=cgA/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18834324_18835839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:0,110:111:99:1660,150,0
22    18835365    rs62231277    T    G    352.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=29.79;MQ0=0;QD=29.41;SNPEFF_AMINO_ACID_CHANGE=G307;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18834324_18835839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:386,33,0
22    18835403    rs16987804    A    G    201.10    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.94;MQ0=2;QD=20.11;SNPEFF_AMINO_ACID_CHANGE=K320R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18834324_18835839;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:0,10:10:21.06:234,21,0
22    18841052    rs9618377    C    G    213.37    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=26.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:246,24,0
22    18841055    .    T    C    212.44    MQFilter40    AC=2;AF=1.00;AN=2;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=26.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:0,8:8:24.04:245,24,0
22    18841126    rs62231302    A    G    1358.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5774;MQ=28.61;MQ0=1;QD=28.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1392,132,0
22    18841215    rs112181013    C    T    2231.86    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.076;DB;DP=162;Dels=0.0;FS=3.038;HRun=0;HaplotypeScore=3.3389;MQ=40.21;MQ0=5;MQRankSum=-0.122;QD=13.78;ReadPosRankSum=0.418;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    0/1:78,84:162:99:2262,0,2005
22    18841240    rs114254761    T    C    2812.29    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=4.995;DB;DP=181;Dels=0.0;FS=0.554;HRun=2;HaplotypeScore=3.195;MQ=42.11;MQ0=1;MQRankSum=-0.268;QD=15.54;ReadPosRankSum=-0.942;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    0/1:84,97:181:99:2842,0,2278
22    18841317    .    A    C    2128.92    MQFilter40    AC=2;AF=1.00;AN=2;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.51;MQ0=3;QD=27.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:2,75:77:99:2162,178,0
22    18841329    .    C    T    693    MQFilter40    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.914;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.96;MQ0=3;MQRankSum=-1.971;QD=11.75;ReadPosRankSum=-1.921;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    0/1:25,34:59:99:723,0,569
22    18841383    .    A    G    34.56    MQFilter40;QDFilter2    AB=0.806;AC=1;AF=0.50;AN=2;BaseQRankSum=3.555;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.19;MQ0=8;MQRankSum=-1.932;QD=0.96;ReadPosRankSum=0.532;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    0/1:29,7:36:64.55:65,0,577
22    18843612    .    AG    A    145.69    PASS    AB=0.72;AC=1;AF=0.50;AN=2;BaseQRankSum=1.001;DP=10;FS=0.0;HRun=4;HaplotypeScore=74.5109;IndelType=D;MQ=28.62;MQ0=7;MQRankSum=0.573;QD=8.09;ReadPosRankSum=-0.248;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    0/1:11,7:10:83.84:185,0,84
22    18843686    rs2083330    G    T    1043.32    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.82;MQ0=3;QD=33.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:0,31:31:84.25:1076,84,0
22    18843741    rs3983990    T    A    504.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.19;MQ0=7;QD=19.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:0,26:26:42.13:537,42,0
22    18843834    rs3875978    A    G    269.12    MQFilter40    AB=0.425;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=40;Dels=0.0;FS=9.031;HRun=0;HaplotypeScore=0.8667;MQ=21.84;MQ0=12;MQRankSum=2.952;QD=6.73;ReadPosRankSum=-2.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    0/1:17,23:40:99:299,0,166
22    18843903    rs3983993    C    T    361.74    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.413;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.49;MQ0=32;MQRankSum=0.413;QD=6.58;ReadPosRankSum=1.073;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008132.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342005    GT:AD:DP:GQ:PL    1/1:13,42:55:22.33:395,22,0
22    18844942    .    C    T    1003.76    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=3.495;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=17.85;MQ0=23;MQRankSum=0.036;QD=11.15;ReadPosRankSum=1.396;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008103.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416498    GT:AD:DP:GQ:PL    1/1:19,71:90:79.18:1037,79,0
22    18845051    .    C    G    115.24    MQFilter40    AC=2;AF=1.00;AN=2;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.18;MQ0=13;QD=5.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008103.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416498    GT:AD:DP:GQ:PL    1/1:0,21:21:17.97:148,18,0
22    18846088    rs9605845    A    G    175    MQFilter40;QDFilter2    AB=0.83;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.839;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9655;MQ=29.68;MQ0=11;MQRankSum=2.888;QD=1.86;ReadPosRankSum=1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC008103.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416498    GT:AD:DP:GQ:PL    0/1:78,16:94:99:205,0,1498
22    18860832    rs145288430    G    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=15.44;MQ0=5;QD=4.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    1/1:1,7:8:6.02:67,6,0
22    18860847    rs147622784    C    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.44;MQ0=4;MQRankSum=0.736;QD=4.45;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    1/1:1,6:8:6.02:67,6,0
22    18860928    .    C    G    311.43    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.143;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.84;MQ0=7;MQRankSum=2.143;QD=13.54;ReadPosRankSum=0.556;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    1/1:4,19:23:38.95:344,39,0
22    18860994    rs62231340    G    C    80.09    MQFilter40    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.431;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=20.83;MQ0=13;MQRankSum=-1.747;QD=2.43;ReadPosRankSum=0.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    0/1:24,9:33:99:110,0,209
22    18861018    rs560182    T    G    233.43    MQFilter40    AB=0.152;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.752;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.66;MQ0=14;MQRankSum=-1.54;QD=7.07;ReadPosRankSum=0.796;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    0/1:5,28:33:30.52:263,0,31
22    18863383    .    A    T    67.21    MQFilter40;QDFilter2    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.09;DP=138;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.86;MQ0=108;MQRankSum=0.876;QD=0.49;ReadPosRankSum=-0.382;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    0/1:86,51:138:97.21:97,0,209
22    18863465    .    G    A    80.24    MQFilter40;QDFilter2    AB=0.844;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.267;DP=154;Dels=0.0;FS=1.995;HRun=0;HaplotypeScore=0.0;MQ=10.12;MQ0=114;MQRankSum=-0.615;QD=0.52;ReadPosRankSum=-0.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    0/1:130,24:154:99:110,0,610
22    18863520    rs62231346    T    G    209.49    MQFilter40    AB=0.753;AC=1;AF=0.50;AN=2;BaseQRankSum=1.287;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=14.16;MQ0=41;MQRankSum=0.817;QD=2.46;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    0/1:64,21:85:99:239,0,556
22    18863659    rs62231347    C    T    47.98    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.41;MQ0=0;QD=9.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    1/1:0,5:5:9:80,9,0
22    18870865    .    A    G    85.59    MQFilter40;QDFilter2    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.354;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=11.88;MQ0=38;MQRankSum=1.323;QD=1.4;ReadPosRankSum=0.154;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    0/1:36,25:61:18.40:116,0,18
22    18870981    .    G    C    253.84    MQFilter40;QDFilter2    AB=0.866;AC=1;AF=0.50;AN=2;BaseQRankSum=0.649;DP=166;Dels=0.0;FS=1.149;HRun=0;HaplotypeScore=0.0;MQ=18.45;MQ0=76;MQRankSum=1.47;QD=1.53;ReadPosRankSum=-1.237;SNPEFF_AMINO_ACID_CHANGE=N48K;SNPEFF_CODON_CHANGE=aaC/aaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18870926_18871012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    0/1:142,22:166:99:284,0,1131
22    18874728    rs3970582    T    C    132.74    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.81;MQ0=4;QD=13.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC008103.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424147    GT:AD:DP:GQ:PL    1/1:0,10:10:15.03:165,15,0
22    18896087    rs73155293    T    C    78.09    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=12;Dels=0.0;FS=10.561;HRun=0;HaplotypeScore=0.8667;MQ=49.86;MQ0=1;MQRankSum=-2.037;QD=6.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313755    GT:AD:DP:GQ:PL    0/1:7,5:12:99:108,0,212
22    18896301    rs5746636    G    T    99.19    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=48.22;MQ0=0;MQRankSum=-0.937;QD=14.17;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313755    GT:AD:DP:GQ:PL    0/1:3,4:7:99:129,0,102
22    18898289    rs441862    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DGCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477156    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
22    18899016    rs428224    G    A    397.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.42;MQ0=0;QD=28.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DGCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477156    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:430,33,0
22    18901004    rs450046    C    T    90.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_AMINO_ACID_CHANGE=R166Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18900951_18901039;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313755    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
22    18901090    rs385440    A    G    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DGCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331444    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
22    18901290    rs381848    G    A    90.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DGCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331444    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
22    18904414    rs455072    A    G    845.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.69;MQ0=2;QD=26.44;SNPEFF_AMINO_ACID_CHANGE=F150;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18904403_18904501;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313755    GT:AD:DP:GQ:PL    1/1:0,32:32:78.19:879,78,0
22    18904606    rs375115    T    G    279.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.41;MQ0=0;QD=34.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DGCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483718    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:312,24,0
22    18904643    rs426237    G    A    74.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.29;MQ0=1;QD=18.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=DGCR6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483718    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:106,9,0
22    18905934    rs2904551    A    G    423.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.582;DB;DP=25;Dels=0.0;FS=4.465;HRun=1;HaplotypeScore=0.0;MQ=55.36;MQ0=0;MQRankSum=0.804;QD=16.95;ReadPosRankSum=1.082;SNPEFF_AMINO_ACID_CHANGE=L441P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18905829_18906004;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357068    GT:AD:DP:GQ:PL    0/1:10,15:25:99:454,0,325
22    18905978    rs16983466    G    A    50.48    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=3.61;ReadPosRankSum=0.623;SNPEFF_AMINO_ACID_CHANGE=D426;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18905829_18906004;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357068    GT:AD:DP:GQ:PL    0/1:11,3:14:80.47:80,0,357
22    18907124    rs1076466    G    A    404.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.942;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=57.26;MQ0=0;MQRankSum=0.666;QD=14.44;ReadPosRankSum=1.218;SNPEFF_AMINO_ACID_CHANGE=P89L;SNPEFF_CODON_CHANGE=cCc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18907069_18907311;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446371    GT:AD:DP:GQ:PL    0/1:14,14:28:99:434,0,460
22    18907405    rs9618419    G    T    86.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.77;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_18907219_18909087;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313755    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
22    18908875    rs1808320    A    G    96.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.22;SNPEFF_AMINO_ACID_CHANGE=L20;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18908855_18909052;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000446371    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:128,9,0
22    18910257    rs2008912    C    T    279.10    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.133;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=19.94;ReadPosRankSum=-1.867;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496625    GT:AD:DP:GQ:PL    0/1:5,9:14:99:309,0,169
22    18910284    rs11332066    AC    A    598.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=5;HaplotypeScore=209.3801;IndelType=D;MQ=58.84;MQ0=0;QD=29.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496625    GT:AD:DP:GQ:PL    1/1:2,18:20:57.16:640,57,0
22    18910301    rs2008904    A    G    797.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.9;MQ0=0;QD=27.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496625    GT:AD:DP:GQ:PL    1/1:0,29:29:72.17:831,72,0
22    18910307    rs2008903    G    A    952.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.2;MQ0=0;QD=29.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496625    GT:AD:DP:GQ:PL    1/1:0,32:32:81.23:985,81,0
22    18910450    rs111337364    CA    C    482.21    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=3.825;DB;DP=39;FS=16.785;HRun=3;HaplotypeScore=100.8735;IndelType=D;MQ=58.81;MQ0=0;MQRankSum=0.503;QD=12.36;ReadPosRankSum=1.173;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496625    GT:AD:DP:GQ:PL    0/1:22,17:39:99:521,0,744
22    18910545    rs2277834    C    T    685.98    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.172;DB;DP=46;Dels=0.0;FS=16.127;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.287;QD=14.91;ReadPosRankSum=-0.471;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_18910330_18911515;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429300    GT:AD:DP:GQ:PL    0/1:20,26:46:99:716,0,653
22    18910756    rs2008878    C    G    951.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=59.56;MQ0=0;QD=33.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496625    GT:AD:DP:GQ:PL    1/1:0,28:28:78.21:984,78,0
22    18912678    rs4819756    A    G    965.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=28.41;SNPEFF_AMINO_ACID_CHANGE=W185R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_18912564_18912713;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357068    GT:AD:DP:GQ:PL    1/1:0,33:34:78.24:999,78,0
22    18912848    rs380705    A    G    237.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.56;MQ0=0;QD=29.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357068    GT:AD:DP:GQ:PL    1/1:0,8:8:21.04:271,21,0
22    18918267    rs17743056    C    T    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357068    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
22    18918430    rs67269695    T    C    81.43    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=0.623;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9989;MQ=60.0;MQ0=0;MQRankSum=1.302;QD=4.79;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357068    GT:AD:DP:GQ:PL    0/1:13,4:17:99:111,0,434
22    18918760    rs67625420    T    C    176.22    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=2.976;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.83;QD=10.37;ReadPosRankSum=0.049;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PRODH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357068    GT:AD:DP:GQ:PL    0/1:10,7:17:99:206,0,300
22    19077049    rs2800960    C    T    563.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGCR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263196    GT:AD:DP:GQ:PL    1/1:0,18:18:45.14:596,45,0
22    19122498    rs2240110    C    T    1346.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSSK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399635    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1379,105,0
22    19136722    rs5993542    G    A    41.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000086933    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
22    19163577    rs35359423    C    CAT    702.92    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.774;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=40.5158;IndelType=I;MQ=55.8;MQ0=0;MQRankSum=-0.623;QD=41.35;ReadPosRankSum=1.415;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:6,11:17:99:742,0,145
22    19168087    rs2800974    G    A    253.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413132    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:287,24,0
22    19184095    rs1061325    T    C    579.09    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.082;DB;DP=48;Dels=0.0;FS=4.566;HRun=0;HaplotypeScore=0.5784;MQ=59.03;MQ0=0;MQRankSum=-0.444;QD=12.06;ReadPosRankSum=-1.376;SNPEFF_AMINO_ACID_CHANGE=M1316V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19184000_19184167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:22,26:48:99:609,0,546
22    19184244    rs2282684    C    T    124.56    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=15;Dels=0.0;FS=2.963;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.306;QD=8.3;ReadPosRankSum=0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:10,5:15:99:155,0,266
22    19187427    rs2236759    C    G    37.60    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=6.27;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:4,2:6:67.59:68,0,143
22    19189003    rs78649162    A    AC    3723.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.0;HRun=1;HaplotypeScore=181.0016;IndelType=I;MQ=60.29;MQ0=0;QD=43.29;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_22_19188840_19189004;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    1/1:1,85:86:99:3723,250,0
22    19197896    rs698423    T    C    1792.16    PASS    AB=0.376;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.057;DB;DP=109;Dels=0.0;FS=4.931;HRun=0;HaplotypeScore=0.0;MQ=59.83;MQ0=0;MQRankSum=-1.122;QD=16.44;ReadPosRankSum=-1.395;SNPEFF_AMINO_ACID_CHANGE=A1063;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19197836_19198019;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:41,68:109:99:1822,0,1237
22    19211467    rs181639433    T    A    1503.27    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.733;DB;DP=80;Dels=0.0;FS=0.974;HRun=1;HaplotypeScore=0.6651;MQ=59.71;MQ0=0;MQRankSum=-0.654;QD=18.79;ReadPosRankSum=-0.814;SNPEFF_AMINO_ACID_CHANGE=I747L;SNPEFF_CODON_CHANGE=Ata/Tta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19211414_19211577;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:32,48:80:99:1533,0,1038
22    19211665    rs9604935    C    T    943.61    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=3.849;DB;DP=49;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=1.8665;MQ=60.0;MQ0=0;MQRankSum=-1.303;QD=19.26;ReadPosRankSum=1.404;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:21,28:49:99:974,0,684
22    19217613    rs2800963    C    T    129.86    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;BaseQRankSum=0.057;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=22.7362;MQ=44.81;MQ0=0;MQRankSum=-0.742;QD=4.99;ReadPosRankSum=-0.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    1/1:3,23:26:17.99:163,18,0
22    19217617    rs113338080    C    T    122.37    HaplotypeScoreFilter13    AB=0.08;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=25;Dels=0.04;FS=0.0;HRun=2;HaplotypeScore=22.7362;MQ=44.81;MQ0=0;MQRankSum=-0.857;QD=4.71;ReadPosRankSum=-1.313;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:2,23:25:4.67:152,0,5
22    19220648    rs807458    G    T    2424.72    PASS    AB=0.434;AC=1;AF=0.50;AN=2;BaseQRankSum=7.04;DB;DP=136;Dels=0.0;FS=1.778;HRun=1;HaplotypeScore=2.8498;MQ=59.66;MQ0=0;MQRankSum=-1.391;QD=17.83;ReadPosRankSum=0.088;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLTCL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263200    GT:AD:DP:GQ:PL    0/1:59,77:136:99:2455,0,1582
22    19419093    rs8140291    A    G    141.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.03;MQ0=0;QD=20.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIRA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539600    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:175,15,0
22    19455376    rs5746742    C    T    643.59    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=2.572;DB;DP=57;Dels=0.0;FS=1.058;HRun=0;HaplotypeScore=1.7351;MQ=60.0;MQ0=0;MQRankSum=0.223;QD=11.29;ReadPosRankSum=1.017;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474226    GT:AD:DP:GQ:PL    0/1:36,21:57:99:674,0,1086
22    19459157    rs2073758    A    G    259.56    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.036;QD=12.36;ReadPosRankSum=2.096;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263202    GT:AD:DP:GQ:PL    0/1:12,9:21:99:290,0,369
22    19462466    rs5746744    C    G    241.03    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.329;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.635;QD=15.06;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263202    GT:AD:DP:GQ:PL    0/1:7,9:16:99:271,0,248
22    19462780    .    T    C    119.23    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.87;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UFD1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263202    GT:AD:DP:GQ:PL    0/1:2,4:6:60.38:149,0,60
22    19467652    rs5748232    T    C    545.08    PASS    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.805;DB;DP=31;Dels=0.0;FS=1.55;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.094;QD=17.58;ReadPosRankSum=-0.681;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263201    GT:AD:DP:GQ:PL    0/1:11,20:31:99:575,0,324
22    19468655    rs5993650    C    T    105.20    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=10.52;ReadPosRankSum=-0.633;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263201    GT:AD:DP:GQ:PL    0/1:6,4:10:99:135,0,183
22    19471609    rs737858    A    G    293.28    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.669;DB;DP=22;Dels=0.0;FS=3.197;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.669;QD=13.33;ReadPosRankSum=-0.035;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455750    GT:AD:DP:GQ:PL    0/1:10,11:22:99:323,0,314
22    19492692    rs8136840    C    G    30.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=10.18;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263201    GT:AD:DP:GQ:PL    0/1:1,2:3:33.98:61,0,34
22    19495967    rs2073736    G    A    176.04    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.588;QD=11.0;ReadPosRankSum=-0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263201    GT:AD:DP:GQ:PL    0/1:7,9:16:99:206,0,225
22    19504318    rs2073733    G    A    189.99    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=1.82;DB;DP=29;Dels=0.0;FS=1.619;HRun=1;HaplotypeScore=0.0;MQ=56.74;MQ0=0;MQRankSum=0.517;QD=6.55;ReadPosRankSum=-2.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471470    GT:AD:DP:GQ:PL    0/1:18,11:29:99:220,0,491
22    19504470    rs2073732    T    C    92.75    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.7;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.231;QD=7.13;ReadPosRankSum=-0.077;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471470    GT:AD:DP:GQ:PL    0/1:9,4:13:99:123,0,268
22    19748690    rs72646953    G    A    267.24    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.589;QD=24.29;ReadPosRankSum=-1.532;SNPEFF_AMINO_ACID_CHANGE=A99;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19748428_19748803;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000329705    GT:AD:DP:GQ:PL    0/1:2,9:11:32.40:297,0,32
22    19794366    rs737860    C    A    45.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNB1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329517    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
22    19808769    rs5748449    C    T    700.59    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.16;DB;DP=37;Dels=0.0;FS=1.493;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=0.622;QD=18.93;ReadPosRankSum=1.084;SNPEFF_AMINO_ACID_CHANGE=R37H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19808751_19808898;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GNB1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329517    GT:AD:DP:GQ:PL    0/1:12,24:37:99:731,0,291
22    19868218    rs1139793    A    G    163.35    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.71;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.272;QD=8.6;ReadPosRankSum=-0.833;SNPEFF_AMINO_ACID_CHANGE=I274T;SNPEFF_CODON_CHANGE=aTa/aCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19868145_19868240;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540474    GT:AD:DP:GQ:PL    0/1:13,6:19:99:193,0,381
22    19882630    rs5993856    G    A    431.73    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=3.544;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.56;QD=20.56;ReadPosRankSum=0.112;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400518    GT:AD:DP:GQ:PL    0/1:7,14:21:99:462,0,124
22    19882946    rs187065627    G    A    1105.49    PASS    AB=0.57;AC=1;AF=0.50;AN=2;BaseQRankSum=1.658;DB;DP=86;Dels=0.0;FS=0.865;HRun=0;HaplotypeScore=1.7256;MQ=59.73;MQ0=0;MQRankSum=1.171;QD=12.85;ReadPosRankSum=1.324;SNPEFF_AMINO_ACID_CHANGE=T215;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19882930_19883104;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540474    GT:AD:DP:GQ:PL    0/1:49,37:86:99:1135,0,1283
22    19882984    rs5992495    T    G    896.90    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5671;MQ=59.3;MQ0=0;MQRankSum=-0.873;QD=13.59;ReadPosRankSum=-0.131;SNPEFF_AMINO_ACID_CHANGE=S203R;SNPEFF_CODON_CHANGE=Agc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19882930_19883104;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540474    GT:AD:DP:GQ:PL    0/1:32,34:66:99:927,0,996
22    19885548    rs12169091    G    T    52.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334363    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:84,6,0
22    19886797    rs8142006    G    A    34.08    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.52;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334363    GT:AD:DP:GQ:PL    0/1:2,2:4:64.07:64,0,72
22    19898659    rs149796774    GC    G    225.58    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.978;DB;DP=12;FS=0.0;HRun=3;HaplotypeScore=60.4508;IndelType=D;MQ=56.04;MQ0=0;MQRankSum=1.106;QD=18.8;ReadPosRankSum=-0.382;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471835    GT:AD:DP:GQ:PL    0/1:4,8:12:96.59:265,0,97
22    19898837    rs885987    A    G    790.78    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=2.226;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.041;QD=14.12;ReadPosRankSum=0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496729    GT:AD:DP:GQ:PL    0/1:30,26:56:99:821,0,777
22    19905802    rs756661    G    A    118.21    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.685;QD=6.95;ReadPosRankSum=-0.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334363    GT:AD:DP:GQ:PL    0/1:12,5:17:99:148,0,414
22    19906256    rs34751052    G    A    495.75    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=3.477;DB;DP=26;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-0.986;QD=19.07;ReadPosRankSum=1.972;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334363    GT:AD:DP:GQ:PL    0/1:11,15:26:99:526,0,230
22    19906306    rs3747067    C    G    1060.57    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.631;DB;DP=49;Dels=0.0;FS=1.338;HRun=1;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.166;QD=21.64;ReadPosRankSum=0.011;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334363    GT:AD:DP:GQ:PL    0/1:14,35:49:99:1091,0,343
22    19906511    rs11541479    G    A    351.50    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.95;DB;DP=19;Dels=0.0;FS=3.757;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.206;QD=18.5;ReadPosRankSum=0.784;SNPEFF_AMINO_ACID_CHANGE=L52;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19906383_19906527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400518    GT:AD:DP:GQ:PL    0/1:8,11:19:99:381,0,258
22    19907192    rs5748471    A    G    38.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=12.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334363    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:70,6,0
22    19919703    .    AG    A    87.33    PASS    AB=0.758;AC=1;AF=0.50;AN=2;BaseQRankSum=2.327;DP=25;FS=0.0;HRun=1;HaplotypeScore=264.8538;IndelType=D;MQ=45.33;MQ0=0;MQRankSum=-2.654;QD=3.49;ReadPosRankSum=-2.164;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXNRD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334363    GT:AD:DP:GQ:PL    0/1:17,8:25:99:126,0,166
22    19950235    rs4633    C    T    297.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.71;SNPEFF_AMINO_ACID_CHANGE=H12;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19950050_19950338;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407537    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:330,24,0
22    19951271    rs4680    G    A    759.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=V108M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19951089_19951282;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000407537    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:792,60,0
22    19954458    rs174699    C    T    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263207    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
22    19956014    rs117222687    G    C    146.49    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.31;ReadPosRankSum=1.517;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263207    GT:AD:DP:GQ:PL    0/1:3,5:8:95.64:176,0,96
22    19956262    rs362204    G    GC    382.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=7;HaplotypeScore=30.2376;IndelType=I;MQ=61.53;MQ0=0;QD=27.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263207    GT:AD:DP:GQ:PL    1/1:2,12:14:36.10:424,36,0
22    19959366    rs165824    G    A    721.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.87;MQ0=0;QD=32.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480792    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:755,57,0
22    19959473    rs165815    C    T    1083.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.87;SNPEFF_AMINO_ACID_CHANGE=R837Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19959409_19959494;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406522    GT:AD:DP:GQ:PL    1/1:0,34:34:84.24:1117,84,0
22    19959955    rs2073744    A    G    558.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480792    GT:AD:DP:GQ:PL    1/1:0,18:18:45.13:592,45,0
22    19960188    rs2518823    T    C    151.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480792    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:185,15,0
22    19961955    rs887199    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361682    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
22    19964418    rs2240718    T    G    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462319    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
22    19969075    rs2073747    A    G    343.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=28.63;SNPEFF_AMINO_ACID_CHANGE=S122;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_19968734_19969260;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARVCF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000344269    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:377,33,0
22    20024174    rs2531713    A    G    371.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C22orf25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327374    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:404,30,0
22    20030657    rs113697305    A    T    36.50    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.3;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C22orf25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327374    GT:AD:DP:GQ:PL    0/1:3,2:5:66.50:66,0,108
22    20043370    rs174876    C    T    74.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.41;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C22orf25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432198    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,108
22    20074295    .    T    TA    387.47    PASS    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=0.146;DP=59;FS=0.0;HRun=14;HaplotypeScore=265.7993;IndelType=I;MQ=57.21;MQ0=0;MQRankSum=1.505;QD=6.57;ReadPosRankSum=-0.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGCR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457069    GT:AD:DP:GQ:PL    0/1:35,16:59:99:426,0,287
22    20100158    rs447017    G    C    261.41    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.923;DB;DP=39;Dels=0.0;FS=1.336;HRun=1;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=0.615;QD=6.7;ReadPosRankSum=-0.4;SNPEFF_AMINO_ACID_CHANGE=S135R;SNPEFF_CODON_CHANGE=agC/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20099824_20100317;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT2A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000444845    GT:AD:DP:GQ:PL    0/1:26,13:39:99:291,0,781
22    20104301    rs395446    T    C    102.54    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=8;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=50.38;MQ0=0;MQRankSum=-0.922;QD=12.82;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGCR8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351989    GT:AD:DP:GQ:PL    0/1:2,6:8:65.93:133,0,66
22    20109677    rs11705021    G    A    261.34    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=13;Dels=0.0;FS=4.15;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.978;QD=20.1;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467920    GT:AD:DP:GQ:PL    0/1:5,8:13:99:291,0,152
22    20128360    .    T    G    35.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DP=6;Dels=0.0;FS=4.771;HRun=3;HaplotypeScore=0.0;MQ=41.96;MQ0=0;MQRankSum=-1.38;QD=5.97;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436518    GT:AD:DP:GQ:PL    0/1:2,4:6:65.78:66,0,67
22    20128651    rs175175    T    G    583.15    PASS    AB=0.344;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=0.992;QD=18.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436518    GT:AD:DP:GQ:PL    0/1:11,21:32:99:613,0,253
22    20295420    rs4425183    G    T    733.02    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=0.309;DB;DP=69;Dels=0.0;FS=1.002;HRun=0;HaplotypeScore=0.0;MQ=52.84;MQ0=0;MQRankSum=0.827;QD=10.62;ReadPosRankSum=-0.259;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXbac-B444P24.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438948    GT:AD:DP:GQ:PL    0/1:42,27:69:99:763,0,1209
22    20303854    rs5993964    G    A    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGCR6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248879    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:73,0,32
22    20307256    rs7235    G    A    173.34    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.49;MQ0=0;MQRankSum=-1.376;QD=10.83;ReadPosRankSum=-0.635;SNPEFF_AMINO_ACID_CHANGE=P55L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20307162_20307309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DGCR6L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405465    GT:AD:DP:GQ:PL    0/1:7,9:16:99:203,0,235
22    20328493    .    A    C    114.20    MQFilter40;QDFilter2    AB=0.836;AC=1;AF=0.50;AN=2;BaseQRankSum=2.099;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=23.49;MQ0=8;MQRankSum=1.969;QD=1.56;ReadPosRankSum=0.028;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=XXbac-B33L19.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458154    GT:AD:DP:GQ:PL    0/1:61,12:73:99:144,0,1190
22    20328704    rs7410756    G    A    62.20    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.29;MQ0=3;QD=3.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=XXbac-B33L19.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458154    GT:AD:DP:GQ:PL    1/1:0,19:19:11.96:95,12,0
22    20385706    rs79640249    G    T    324.01    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=2.681;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=41.31;MQ0=1;MQRankSum=-1.552;QD=11.17;ReadPosRankSum=0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XXbac-B33L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416922    GT:AD:DP:GQ:PL    0/1:18,11:29:99:354,0,454
22    20385739    rs146242498    TTGTC    T    728.13    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=4.85;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=207.699;IndelType=D;MQ=41.93;MQ0=3;MQRankSum=-0.817;QD=18.2;ReadPosRankSum=0.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XXbac-B33L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416922    GT:AD:DP:GQ:PL    0/1:23,17:36:99:767,0,1495
22    20385845    .    A    T    52.59    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.12;MQ0=0;MQRankSum=-2.602;QD=2.77;ReadPosRankSum=1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XXbac-B33L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416922    GT:AD:DP:GQ:PL    0/1:14,4:19:82.59:83,0,458
22    20394502    .    C    T    249.77    MQFilter40    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=1.782;DP=66;Dels=0.0;FS=3.362;HRun=0;HaplotypeScore=0.0;MQ=21.68;MQ0=20;MQRankSum=-3.712;QD=3.78;ReadPosRankSum=-0.806;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XXbac-B33L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418108    GT:AD:DP:GQ:PL    0/1:29,37:66:99:280,0,527
22    20394526    .    C    T    315.77    MQFilter40    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.69;DP=64;Dels=0.0;FS=4.442;HRun=0;HaplotypeScore=0.0;MQ=26.32;MQ0=15;MQRankSum=-3.39;QD=4.93;ReadPosRankSum=0.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XXbac-B33L19.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418108    GT:AD:DP:GQ:PL    0/1:28,36:64:99:346,0,572
22    20457060    .    C    G    792.27    MQFilter40    AB=0.245;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.153;DP=98;Dels=0.0;FS=4.41;HRun=0;HaplotypeScore=0.9867;MQ=19.79;MQ0=19;MQRankSum=-1.027;QD=8.08;ReadPosRankSum=-0.447;SNPEFF_AMINO_ACID_CHANGE=V1320;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20455682_20461409;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355186    GT:AD:DP:GQ:PL    0/1:24,74:98:99:822,0,211
22    20457204    rs141165655    G    A    1169.27    MQFilter40    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=0.5;DB;DP=144;Dels=0.0;FS=2.563;HRun=0;HaplotypeScore=2.7223;MQ=20.82;MQ0=20;MQRankSum=1.444;QD=8.12;ReadPosRankSum=-1.03;SNPEFF_AMINO_ACID_CHANGE=G1272;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20455682_20461409;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000355186    GT:AD:DP:GQ:PL    0/1:40,104:144:99:1199,0,366
22    20458029    .    A    C    99.50    MQFilter40;QDFilter2    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=2.37;DP=62;Dels=0.0;FS=2.831;HRun=1;HaplotypeScore=0.0;MQ=19.61;MQ0=30;MQRankSum=1.459;QD=1.6;ReadPosRankSum=-0.866;SNPEFF_AMINO_ACID_CHANGE=D1091E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20456003_20461786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426804    GT:AD:DP:GQ:PL    0/1:44,18:62:99:129,0,534
22    20474992    rs9606411    T    C    89.76    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.803;DB;DP=24;Dels=0.0;FS=4.634;HRun=2;HaplotypeScore=0.0;MQ=37.33;MQ0=5;MQRankSum=-0.972;QD=3.74;ReadPosRankSum=-0.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=XXbac-B33L19.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434754    GT:AD:DP:GQ:PL    0/1:12,12:24:99:120,0,339
22    20643815    .    T    C    1048.72    MQFilter40    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=3.948;DP=167;DS;Dels=0.0;FS=1.856;HRun=0;HaplotypeScore=0.9867;MQ=17.28;MQ0=40;MQRankSum=-0.003;QD=6.24;ReadPosRankSum=1.354;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AC011718.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412656    GT:AD:DP:GQ:PL    0/1:66,101:167:99:1079,0,536
22    20705697    rs1210429    C    G    59.52    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.78;MQ0=5;QD=4.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    1/1:0,13:13:9.01:92,9,0
22    20709840    rs10212022    G    C    455.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.35;MQ0=0;QD=28.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:489,39,0
22    20710219    rs62218177    C    T    175.81    MQFilter40    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.488;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.4706;MQ=35.71;MQ0=7;MQRankSum=-4.0;QD=5.17;ReadPosRankSum=0.472;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:12,21:34:99:206,0,274
22    20710367    .    A    G    37.56    QDFilter2    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=1.291;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.864;MQ=43.65;MQ0=1;MQRankSum=-3.366;QD=1.21;ReadPosRankSum=0.106;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:18,13:31:67.56:68,0,577
22    20710386    rs11089443    G    T    244.02    PASS    AB=0.719;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.127;DB;DP=32;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.8667;MQ=47.51;MQ0=1;MQRankSum=1.086;QD=7.63;ReadPosRankSum=0.815;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:23,9:32:99:274,0,509
22    20710559    rs11089444    C    G    257.39    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=54.06;MQ0=0;MQRankSum=-0.755;QD=9.53;ReadPosRankSum=-0.162;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:18,9:27:99:287,0,416
22    20710645    rs12157668    T    A    207.02    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.7254;MQ=47.94;MQ0=1;MQRankSum=-3.36;QD=7.96;ReadPosRankSum=0.116;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:13,13:26:99:237,0,282
22    20710836    rs12159923    G    C    336.02    MQFilter40;SnpCluster    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=3.008;DB;DP=53;Dels=0.0;FS=1.325;HRun=2;HaplotypeScore=3.5148;MQ=32.15;MQ0=7;MQRankSum=-1.537;QD=6.34;ReadPosRankSum=-0.407;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:33,19:53:99:366,0,549
22    20710839    rs62218186    G    A    306.29    MQFilter40;SnpCluster    AB=0.686;AC=1;AF=0.50;AN=2;BaseQRankSum=3.326;DB;DP=51;Dels=0.0;FS=1.377;HRun=0;HaplotypeScore=5.4087;MQ=32.07;MQ0=8;MQRankSum=-1.499;QD=6.01;ReadPosRankSum=-0.414;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:35,16:51:99:336,0,509
22    20710844    rs62218187    G    A    301.52    MQFilter40;SnpCluster    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=1.845;DB;DP=54;Dels=0.0;FS=1.332;HRun=1;HaplotypeScore=6.4082;MQ=31.34;MQ0=9;MQRankSum=-1.256;QD=5.58;ReadPosRankSum=0.051;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:37,17:54:99:332,0,587
22    20710932    .    A    G    36.86    MQFilter40;QDFilter2    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.286;DP=34;Dels=0.0;FS=6.107;HRun=0;HaplotypeScore=0.5784;MQ=28.09;MQ0=9;MQRankSum=-1.715;QD=1.08;ReadPosRankSum=1.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:24,10:34:66.86:67,0,496
22    20710985    rs12160675    A    C    57.94    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.36;MQ0=2;MQRankSum=-2.383;QD=4.83;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:6,6:12:87.93:88,0,204
22    20710991    rs12157792    T    C    54.93    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.21;MQ0=2;MQRankSum=-2.637;QD=3.92;ReadPosRankSum=1.932;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:8,6:14:84.92:85,0,250
22    20710997    rs62218191    T    C    57.95    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=35.86;MQ0=2;MQRankSum=-2.072;QD=4.83;ReadPosRankSum=1.568;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:8,4:12:87.94:88,0,194
22    20712536    rs9712807    C    T    307.60    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.991;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.126;QD=8.79;ReadPosRankSum=-0.126;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:23,12:35:99:338,0,569
22    20712587    rs9712922    T    G    339.93    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=0.592;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;MQRankSum=-2.171;QD=11.72;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:16,13:29:99:370,0,453
22    20712726    rs62218238    C    G    85.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.653;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.11;MQ0=0;MQRankSum=-2.266;QD=5.7;ReadPosRankSum=0.674;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:10,5:15:99:115,0,299
22    20713100    rs78138399    A    G    60.64    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=0.895;DB;DP=10;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.0;MQ=54.14;MQ0=0;MQRankSum=0.895;QD=6.06;ReadPosRankSum=-2.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:7,3:10:90.63:91,0,209
22    20713559    rs71317849    A    G    99.39    MQFilter40    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.412;DB;DP=21;Dels=0.0;FS=20.434;HRun=0;HaplotypeScore=2.98;MQ=38.35;MQ0=1;MQRankSum=-3.114;QD=4.73;ReadPosRankSum=-0.658;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:13,8:21:99:129,0,348
22    20713976    rs12168608    G    A    292.30    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.48;DB;DP=16;Dels=0.0;FS=2.688;HRun=1;HaplotypeScore=0.0;MQ=35.39;MQ0=3;MQRankSum=1.283;QD=18.27;ReadPosRankSum=0.691;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:4,12:16:21.20:322,0,21
22    20714003    rs62218250    G    C    137.05    MQFilter40    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=0.259;DB;DP=19;Dels=0.0;FS=2.463;HRun=1;HaplotypeScore=0.0;MQ=27.99;MQ0=6;MQRankSum=1.073;QD=7.21;ReadPosRankSum=1.191;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:11,8:19:99:167,0,107
22    20714329    rs12168773    G    A    164.23    MQFilter40    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.218;DB;DP=42;Dels=0.0;FS=1.674;HRun=1;HaplotypeScore=0.0;MQ=24.69;MQ0=13;MQRankSum=-0.598;QD=3.91;ReadPosRankSum=0.199;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:26,16:42:99:194,0,380
22    20714575    .    T    C    48.41    QDFilter2    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.301;DP=26;Dels=0.0;FS=2.74;HRun=0;HaplotypeScore=0.0;MQ=47.28;MQ0=1;MQRankSum=-2.149;QD=1.86;ReadPosRankSum=0.333;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:18,8:26:78.40:78,0,569
22    20714618    rs62218259    G    C    182.14    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=2.557;DB;DP=42;Dels=0.0;FS=10.719;HRun=1;HaplotypeScore=0.5784;MQ=50.53;MQ0=1;MQRankSum=-0.627;QD=4.34;ReadPosRankSum=0.917;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:32,10:42:99:212,0,733
22    20714686    .    C    T    346.73    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.352;DP=48;Dels=0.0;FS=4.948;HRun=0;HaplotypeScore=1.6281;MQ=52.14;MQ0=0;MQRankSum=-3.929;QD=7.22;ReadPosRankSum=3.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:30,18:48:99:377,0,884
22    20714741    .    A    G    41.97    QDFilter2    AB=0.842;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.216;DP=38;Dels=0.03;FS=2.127;HRun=0;HaplotypeScore=9.7239;MQ=55.27;MQ0=0;MQRankSum=-2.04;QD=1.08;ReadPosRankSum=-2.452;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:32,6:38:71.96:72,0,927
22    20714915    rs62218960    G    T    292.44    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.372;DB;DP=40;Dels=0.0;FS=9.015;HRun=0;HaplotypeScore=0.7887;MQ=47.16;MQ0=0;MQRankSum=0.581;QD=7.31;ReadPosRankSum=-1.773;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:26,14:40:99:322,0,621
22    20714927    rs62218961    C    G    80.19    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.906;DB;DP=35;Dels=0.0;FS=4.53;HRun=0;HaplotypeScore=0.0;MQ=46.42;MQ0=0;MQRankSum=-0.698;QD=2.29;ReadPosRankSum=-0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:26,9:35:99:110,0,706
22    20714968    .    C    T    63.54    MQFilter40    AB=0.852;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DP=27;Dels=0.0;FS=2.447;HRun=1;HaplotypeScore=5.6232;MQ=36.74;MQ0=2;MQRankSum=0.704;QD=2.35;ReadPosRankSum=2.409;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:23,4:27:93.53:94,0,368
22    20715201    .    TCCACGGCGTCGCTAAAGAGGTCGCCGC    T    1231.85    PASS    AB=0.822;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DP=21;FS=1.822;HRun=0;HaplotypeScore=467.8415;IndelType=D;MQ=25.79;MQ0=13;MQRankSum=0.818;QD=33.29;ReadPosRankSum=-0.241;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:29,8:21:99:1271,0,2532
22    20715651    rs62218968    C    G    53.74    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=1.15;DB;DP=20;Dels=0.0;FS=6.107;HRun=1;HaplotypeScore=0.8941;MQ=55.75;MQ0=1;MQRankSum=1.25;QD=2.69;ReadPosRankSum=-0.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:15,5:20:83.73:84,0,353
22    20715913    rs71186660    ATCGCTAACGAGGACGCCGCCCAGGGCG    A    612.11    PASS    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=3.416;DB;DP=33;FS=18.176;HRun=0;HaplotypeScore=692.2262;IndelType=D;MQ=52.17;MQ0=2;MQRankSum=-1.203;QD=16.54;ReadPosRankSum=0.144;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:28,9:33:99:651,0,645
22    20716017    rs140710493    C    G    251.25    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=0.277;DB;DP=23;Dels=0.0;FS=7.06;HRun=2;HaplotypeScore=0.0;MQ=53.21;MQ0=0;MQRankSum=-3.416;QD=10.92;ReadPosRankSum=-0.523;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:11,12:23:99:281,0,352
22    20716154    rs74830498    A    G    62.80    PASS    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=1.965;DB;DP=18;Dels=0.0;FS=2.058;HRun=2;HaplotypeScore=0.7887;MQ=55.86;MQ0=0;MQRankSum=-3.027;QD=3.49;ReadPosRankSum=-0.584;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:14,4:18:92.79:93,0,439
22    20716225    rs62218970    T    G    39.85    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.9874;MQ=52.34;MQ0=0;MQRankSum=-1.532;QD=3.32;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470202    GT:AD:DP:GQ:PL    0/1:7,5:12:69.84:70,0,220
22    20718525    rs2277833    T    C    124.32    MQFilter40;QDFilter2    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.071;DB;DP=76;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=19.61;MQ0=35;MQRankSum=-2.018;QD=1.64;ReadPosRankSum=-0.441;SNPEFF_AMINO_ACID_CHANGE=N325S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20718476_20718607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:56,20:76:99:154,0,633
22    20718692    rs1807536    G    A    391.24    PASS    AB=0.695;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.152;DB;DP=59;Dels=0.0;FS=5.131;HRun=1;HaplotypeScore=0.0;MQ=42.23;MQ0=2;MQRankSum=-1.823;QD=6.63;ReadPosRankSum=1.115;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:41,18:59:99:421,0,1271
22    20723536    rs147981494    C    T    149.69    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.684;QD=18.71;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:3,5:8:99:180,0,104
22    20724622    rs79737013    C    T    324.90    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=2.719;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.18;MQ0=0;MQRankSum=-0.113;QD=19.11;ReadPosRankSum=0.227;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:6,11:17:99:355,0,103
22    20729885    rs148868491    C    T    295.80    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.083;DB;DP=42;Dels=0.0;FS=2.231;HRun=0;HaplotypeScore=0.0;MQ=32.18;MQ0=16;MQRankSum=1.26;QD=7.04;ReadPosRankSum=1.054;SNPEFF_AMINO_ACID_CHANGE=V99I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20729780_20729925;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=USP41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454608    GT:AD:DP:GQ:PL    0/1:28,14:42:99:326,0,378
22    20755098    rs1990249    A    G    841.06    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=4.28;DB;DP=54;Dels=0.0;FS=1.141;HRun=0;HaplotypeScore=0.9933;MQ=59.57;MQ0=0;MQRankSum=-1.014;QD=15.58;ReadPosRankSum=-0.188;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356671    GT:AD:DP:GQ:PL    0/1:24,30:54:99:871,0,603
22    20755527    rs2283787    G    A    180.87    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=0.597;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.663;QD=16.44;ReadPosRankSum=0.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356671    GT:AD:DP:GQ:PL    0/1:4,7:11:99:211,0,126
22    20759405    rs77462388    C    T    80.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=16.04;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356671    GT:AD:DP:GQ:PL    0/1:2,3:5:69.72:110,0,70
22    20759534    rs5761555    A    G    888.84    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.496;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.679;QD=15.07;ReadPosRankSum=0.924;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF74;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356671    GT:AD:DP:GQ:PL    0/1:26,33:59:99:919,0,820
22    20759672    rs3747076    G    A    2030.78    PASS    AB=0.413;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.024;DB;DP=121;Dels=0.0;FS=7.826;HRun=1;HaplotypeScore=1.9445;MQ=59.85;MQ0=0;MQRankSum=-0.997;QD=16.78;ReadPosRankSum=0.097;SNPEFF_AMINO_ACID_CHANGE=E117K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20759667_20761614;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF74;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356671    GT:AD:DP:GQ:PL    0/1:50,71:121:99:2061,0,1453
22    20779604    rs7286419    T    G    40.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.44;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494535    GT:AD:DP:GQ:PL    0/1:1,2:3:22.52:70,0,23
22    20779768    rs874101    G    C    90.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.937;QD=12.94;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=A831G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20778875_20779970;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341328    GT:AD:DP:GQ:PL    0/1:3,4:7:92.04:121,0,92
22    20781670    rs57590287    T    C    144.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.295;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.53;QD=9.65;ReadPosRankSum=0.648;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266214    GT:AD:DP:GQ:PL    0/1:9,6:15:99:175,0,256
22    20784050    rs2241230    T    A    639.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.46;DB;DP=52;Dels=0.0;FS=4.022;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.083;QD=12.3;ReadPosRankSum=-0.669;SNPEFF_AMINO_ACID_CHANGE=T425S;SNPEFF_CODON_CHANGE=Acg/Tcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20784017_20784120;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266214    GT:AD:DP:GQ:PL    0/1:26,26:52:99:669,0,565
22    20784217    rs882745    C    T    51.74    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.39;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL22;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,3:7:81.74:82,0,137
22    20784908    rs879193    T    G    55.76    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.72;QD=9.29;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL22;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:68.96:86,0,69
22    20784909    rs56935344    T    A    59.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=-0.72;QD=9.93;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL22;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,4:6:67.37:90,0,67
22    20796117    rs8353    G    T    47.41    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=11.761;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=6.77;ReadPosRankSum=0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266214    GT:AD:DP:GQ:PL    0/1:4,3:7:77.41:77,0,138
22    20796175    rs9997    T    C    245.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.02;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCARF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266214    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:278,21,0
22    20800835    rs8748    A    G    626.13    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.721;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.507;QD=12.52;ReadPosRankSum=-1.438;SNPEFF_AMINO_ACID_CHANGE=D335;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20800730_20800963;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440659    GT:AD:DP:GQ:PL    0/1:23,26:50:99:656,0,640
22    20800983    rs1058990    G    A    403.86    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.432;DB;DP=31;Dels=0.0;FS=3.31;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.603;QD=13.03;ReadPosRankSum=-1.517;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328879    GT:AD:DP:GQ:PL    0/1:17,14:31:99:434,0,585
22    20843885    rs165613    T    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328879    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
22    20847472    rs5755677    A    T    133.05    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.457;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.352;QD=7.83;ReadPosRankSum=-1.256;SNPEFF_AMINO_ACID_CHANGE=L11H;SNPEFF_CODON_CHANGE=cTt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20847435_20847504;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=KLHL22;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443285    GT:AD:DP:GQ:PL    0/1:11,6:17:99:163,0,376
22    20891498    rs3216923    C    CCCTA    306.95    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.318;DB;DP=20;FS=2.884;HRun=0;HaplotypeScore=105.2934;IndelType=I;MQ=55.21;MQ0=0;MQRankSum=-2.161;QD=15.35;ReadPosRankSum=-0.896;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438962    GT:AD:DP:GQ:PL    0/1:15,5:20:99:346,0,621
22    20891545    rs4821915    A    G    389.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=35.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438962    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:422,33,0
22    20907303    rs165829    T    C    75.99    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=10.86;ReadPosRankSum=0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486656    GT:AD:DP:GQ:PL    0/1:4,3:7:99:106,0,138
22    20909544    rs73157002    G    A    33.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.38;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420849    GT:AD:DP:GQ:PL    0/1:2,2:4:63.52:64,0,64
22    20929286    rs165842    C    G    2142.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=37.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263205    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2175,163,0
22    20938772    rs1572878    T    C    264.79    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.095;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.28;MQ0=0;MQRankSum=1.46;QD=8.27;ReadPosRankSum=1.226;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476187    GT:AD:DP:GQ:PL    0/1:20,12:32:99:295,0,646
22    20938775    rs165747    T    C    285.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.35;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6006;MQ=59.23;MQ0=0;MQRankSum=0.614;QD=9.51;ReadPosRankSum=1.376;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476187    GT:AD:DP:GQ:PL    0/1:18,12:30:99:315,0,588
22    20939608    rs2285698    C    A    207.51    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.062;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.694;QD=10.92;ReadPosRankSum=-1.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476187    GT:AD:DP:GQ:PL    0/1:10,9:19:99:238,0,362
22    20940085    rs2285699    G    A    364.56    PASS    AB=0.35;AC=1;AF=0.50;AN=2;BaseQRankSum=1.189;DB;DP=20;Dels=0.0;FS=1.83;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.079;QD=18.23;ReadPosRankSum=0.951;SNPEFF_AMINO_ACID_CHANGE=P583;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_20940015_20940113;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425759    GT:AD:DP:GQ:PL    0/1:7,13:20:99:395,0,208
22    20940208    rs165615    T    C    286.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436496    GT:AD:DP:GQ:PL    1/1:0,10:10:30.07:319,30,0
22    21024880    rs520698    A    G    368.92    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.32;DB;DP=24;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.9867;MQ=59.63;MQ0=0;MQRankSum=0.888;QD=15.37;ReadPosRankSum=-0.32;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM108A5P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411545    GT:AD:DP:GQ:PL    0/1:10,14:24:99:399,0,259
22    21034809    rs28668558    G    A    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=25.26;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
22    21044631    .    G    A    101.84    MQFilter40    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.643;DP=51;Dels=0.0;FS=8.154;HRun=1;HaplotypeScore=2.6655;MQ=35.33;MQ0=0;MQRankSum=-0.972;QD=2.0;ReadPosRankSum=-2.943;SNPEFF_AMINO_ACID_CHANGE=D105N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:44,7:51:99:132,0,908
22    21044637    rs71312777    T    A    63.67    MQFilter40;QDFilter2    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=0.851;DB;DP=51;Dels=0.0;FS=7.9;HRun=0;HaplotypeScore=1.6671;MQ=35.16;MQ0=0;MQRankSum=-0.911;QD=1.25;ReadPosRankSum=-1.149;SNPEFF_AMINO_ACID_CHANGE=S107T;SNPEFF_CODON_CHANGE=Tca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:45,6:51:93.66:94,0,910
22    21044663    rs10427829    G    C    765.15    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.94;MQ0=0;QD=19.13;SNPEFF_AMINO_ACID_CHANGE=S115;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    1/1:0,40:40:69.09:798,69,0
22    21044705    rs181877028    G    A    165.84    MQFilter40    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=3.267;DB;DP=41;Dels=0.0;FS=12.527;HRun=0;HaplotypeScore=0.8321;MQ=27.14;MQ0=1;MQRankSum=-1.05;QD=4.04;ReadPosRankSum=1.02;SNPEFF_AMINO_ACID_CHANGE=T129;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:25,16:41:99:196,0,550
22    21044725    rs34577248    A    G    155.90    MQFilter40    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=38;Dels=0.0;FS=2.492;HRun=1;HaplotypeScore=0.9665;MQ=27.93;MQ0=2;MQRankSum=-2.494;QD=4.1;ReadPosRankSum=1.458;SNPEFF_AMINO_ACID_CHANGE=K136R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:24,14:38:99:186,0,522
22    21044815    rs35346050    C    T    868.82    HaplotypeScoreFilter13    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.545;DB;DP=69;Dels=0.0;FS=7.122;HRun=2;HaplotypeScore=13.6079;MQ=44.69;MQ0=1;MQRankSum=3.449;QD=12.59;ReadPosRankSum=-1.065;SNPEFF_AMINO_ACID_CHANGE=S166L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:38,31:69:99:899,0,911
22    21044816    rs28697897    G    A    97.86    HaplotypeScoreFilter13;QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=1.812;DB;DP=70;Dels=0.0;FS=5.619;HRun=0;HaplotypeScore=13.6079;MQ=44.95;MQ0=1;MQRankSum=-4.29;QD=1.4;ReadPosRankSum=2.078;SNPEFF_AMINO_ACID_CHANGE=S166;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:54,16:70:99:128,0,1659
22    21044848    rs5751736    A    T    2121.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6403;MQ=46.19;MQ0=1;QD=32.14;SNPEFF_AMINO_ACID_CHANGE=K177I;SNPEFF_CODON_CHANGE=aAa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2154,168,0
22    21044998    rs5751737    C    T    675.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.482;DB;DP=55;Dels=0.0;FS=2.356;HRun=1;HaplotypeScore=0.0;MQ=50.44;MQ0=0;MQRankSum=-4.606;QD=12.29;ReadPosRankSum=1.597;SNPEFF_AMINO_ACID_CHANGE=A227V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:30,25:55:99:706,0,932
22    21045012    rs5760028    T    C    619.63    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.67;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=49.86;MQ0=0;MQRankSum=-3.96;QD=11.27;ReadPosRankSum=2.602;SNPEFF_AMINO_ACID_CHANGE=W232R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:31,24:55:99:650,0,981
22    21045147    rs150713772    G    A    1115.73    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=3.308;DB;DP=95;Dels=0.0;FS=1.861;HRun=0;HaplotypeScore=1.7262;MQ=43.93;MQ0=1;MQRankSum=-2.301;QD=11.74;ReadPosRankSum=-0.565;SNPEFF_AMINO_ACID_CHANGE=V277I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:47,48:95:99:1146,0,1272
22    21045397    rs12158743    C    T    754.57    HaplotypeScoreFilter13;SnpCluster    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=0.378;DB;DP=103;Dels=0.0;FS=0.957;HRun=0;HaplotypeScore=41.5589;MQ=43.36;MQ0=1;MQRankSum=-0.139;QD=7.33;ReadPosRankSum=0.687;SNPEFF_AMINO_ACID_CHANGE=A360V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:67,35:103:99:785,0,1527
22    21045398    .    G    T    148.76    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DP=101;Dels=0.0;FS=2.854;HRun=0;HaplotypeScore=41.5589;MQ=43.73;MQ0=0;MQRankSum=-4.726;QD=1.47;ReadPosRankSum=0.53;SNPEFF_AMINO_ACID_CHANGE=A360;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:80,21:101:99:179,0,2200
22    21045405    rs72490655    A    G    101.09    HaplotypeScoreFilter13;QDFilter2;SnpCluster    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=100;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=38.7883;MQ=45.88;MQ0=0;MQRankSum=-5.214;QD=1.01;ReadPosRankSum=0.8;SNPEFF_AMINO_ACID_CHANGE=R363G;SNPEFF_CODON_CHANGE=Aga/Gga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:81,19:100:99:131,0,2353
22    21045651    rs5760036    C    T    767.96    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=1.012;DB;DP=52;Dels=0.0;FS=4.112;HRun=0;HaplotypeScore=0.0;MQ=58.12;MQ0=0;MQRankSum=-0.876;QD=14.77;ReadPosRankSum=1.596;SNPEFF_AMINO_ACID_CHANGE=R445*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_22_21044319_21045692;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    0/1:25,27:52:99:798,0,679
22    21049094    rs59306024    G    A    41.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.47;MQ0=5;QD=5.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L4P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412250    GT:AD:DP:GQ:PL    1/1:0,7:7:6.02:73,6,0
22    21052990    rs5751757    G    C    247.43    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.052;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.68;MQ0=1;MQRankSum=-0.311;QD=9.16;ReadPosRankSum=-0.415;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514371    GT:AD:DP:GQ:PL    0/1:16,11:27:99:277,0,503
22    21062268    rs13471    G    T    910.20    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.901;DB;DP=62;Dels=0.0;FS=1.333;HRun=0;HaplotypeScore=1.5661;MQ=57.38;MQ0=0;MQRankSum=0.112;QD=14.68;ReadPosRankSum=1.216;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466394    GT:AD:DP:GQ:PL    0/1:27,35:62:99:940,0,549
22    21064120    rs146546335    G    A    51.03    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=41.55;MQ0=2;MQRankSum=0.0;QD=3.65;ReadPosRankSum=1.239;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466394    GT:AD:DP:GQ:PL    0/1:10,4:14:81.02:81,0,251
22    21064356    rs5760149    A    C    183.80    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=44.45;MQ0=0;MQRankSum=-0.529;QD=13.13;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466394    GT:AD:DP:GQ:PL    0/1:6,8:14:99:214,0,137
22    21065201    rs116327959    A    G    514.95    PASS    AB=0.712;AC=1;AF=0.50;AN=2;BaseQRankSum=4.542;DB;DP=73;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=9.4619;MQ=41.34;MQ0=1;MQRankSum=1.203;QD=7.05;ReadPosRankSum=-0.636;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466394    GT:AD:DP:GQ:PL    0/1:52,21:73:99:545,0,1293
22    21065285    rs57492754    A    G    78.53    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=42.59;MQ0=2;MQRankSum=0.551;QD=4.62;ReadPosRankSum=-0.184;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466394    GT:AD:DP:GQ:PL    0/1:11,6:17:99:109,0,327
22    21068659    rs641901    A    G    705.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.35;MQ0=4;QD=30.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:738,57,0
22    21068850    rs5760167    T    G    902.64    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=1.206;DB;DP=89;Dels=0.0;FS=8.633;HRun=1;HaplotypeScore=0.0;MQ=40.82;MQ0=6;MQRankSum=-1.082;QD=10.14;ReadPosRankSum=0.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    0/1:53,36:89:99:933,0,1270
22    21073122    rs1807692    G    A    607.88    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.28;DB;DP=39;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.92;MQ0=0;MQRankSum=-0.269;QD=15.59;ReadPosRankSum=-0.496;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC007308.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535339    GT:AD:DP:GQ:PL    0/1:17,22:39:99:638,0,506
22    21080721    rs79176945    T    TG    227.98    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=21.4759;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=0.762;QD=25.33;ReadPosRankSum=-0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485123    GT:AD:DP:GQ:PL    0/1:2,7:9:47.33:267,0,47
22    21081964    rs4820583    C    T    421.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:455,36,0
22    21087628    .    C    T    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.29;MQ0=1;QD=17.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462210    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:100,9,0
22    21088146    rs17819969    C    G    813.80    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.167;DB;DP=78;Dels=0.0;FS=2.024;HRun=2;HaplotypeScore=0.0;MQ=45.45;MQ0=0;MQRankSum=-0.352;QD=10.43;ReadPosRankSum=0.576;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477368    GT:AD:DP:GQ:PL    0/1:41,37:78:99:844,0,1128
22    21106055    rs5751852    G    A    375.69    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.237;DB;DP=18;Dels=0.0;FS=2.823;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=20.87;ReadPosRankSum=-2.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466162    GT:AD:DP:GQ:PL    0/1:3,15:18:77.99:406,0,78
22    21106141    rs73160984    T    C    145.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466162    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:178,15,0
22    21107153    rs2329583    T    C    1301.01    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=0.364;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;MQRankSum=-1.377;QD=16.06;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466162    GT:AD:DP:GQ:PL    0/1:38,43:81:99:1331,0,1163
22    21118918    rs165764    T    G    63.53    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-1.231;QD=12.71;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    0/1:2,3:5:57.20:94,0,57
22    21119995    rs73161000    A    T    1173.41    PASS    AB=0.431;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.74;DB;DP=72;Dels=0.0;FS=5.994;HRun=0;HaplotypeScore=0.8667;MQ=59.68;MQ0=0;MQRankSum=0.353;QD=16.3;ReadPosRankSum=0.944;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    0/1:31,41:72:99:1203,0,1055
22    21140231    rs66991700    CATG    C    1169.16    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=6.312;DB;DP=68;FS=0.0;HRun=0;HaplotypeScore=265.3293;IndelType=D;MQ=57.84;MQ0=0;MQRankSum=-1.551;QD=17.19;ReadPosRankSum=-1.178;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    0/1:40,28:68:99:1208,0,2563
22    21141300    rs4675    T    C    889.10    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=0.954;DB;DP=68;Dels=0.0;FS=0.992;HRun=1;HaplotypeScore=0.5784;MQ=59.73;MQ0=0;MQRankSum=-1.072;QD=13.07;ReadPosRankSum=-0.717;SNPEFF_AMINO_ACID_CHANGE=H482;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21141163_21142008;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPIND1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215727    GT:AD:DP:GQ:PL    0/1:37,31:68:99:919,0,1097
22    21141561    rs144524371    T    C    36.13    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9494;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.04;ReadPosRankSum=-0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERPIND1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406799    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:66,0,27
22    21147293    rs165793    A    G    38.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
22    21150340    rs165924    T    C    109.83    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.365;QD=10.98;ReadPosRankSum=1.036;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485950    GT:AD:DP:GQ:PL    0/1:6,4:10:99:140,0,147
22    21150704    rs739523    C    G    76.75    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.35;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485950    GT:AD:DP:GQ:PL    0/1:2,3:5:66.91:107,0,67
22    21157192    rs75787781    C    T    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
22    21167605    rs77646456    G    GACA    1281.86    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.626;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=111.9896;IndelType=I;MQ=57.39;MQ0=0;MQRankSum=-0.706;QD=35.61;ReadPosRankSum=-0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    0/1:15,21:36:99:1321,0,642
22    21167787    rs165854    G    A    351.24    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=32;Dels=0.0;FS=9.064;HRun=2;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=-1.083;QD=10.98;ReadPosRankSum=0.589;SNPEFF_AMINO_ACID_CHANGE=C230;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21167646_21167794;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    0/1:18,14:32:99:381,0,561
22    21174312    rs165691    C    A    141.22    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.676;QD=14.12;ReadPosRankSum=-0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449120    GT:AD:DP:GQ:PL    0/1:5,5:10:99:171,0,161
22    21174798    rs73162824    T    C    746.36    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=2.008;DB;DP=59;Dels=0.0;FS=1.416;HRun=0;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=1.031;QD=12.65;ReadPosRankSum=-0.893;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449120    GT:AD:DP:GQ:PL    0/1:33,26:59:99:776,0,1081
22    21188732    rs165729    C    A    226.95    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=-0.401;QD=9.08;ReadPosRankSum=-0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    0/1:14,11:25:99:257,0,461
22    21188964    rs5760899    T    C    1039.43    PASS    AB=0.373;AC=1;AF=0.50;AN=2;BaseQRankSum=3.848;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.75;QD=20.38;ReadPosRankSum=1.003;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PI4KA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255882    GT:AD:DP:GQ:PL    0/1:19,32:51:99:1069,0,613
22    21213380    rs1061063    C    T    248.69    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=21;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.9578;MQ=58.89;MQ0=0;MQRankSum=0.337;QD=11.84;ReadPosRankSum=-1.973;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_21213271_21213635;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215730    GT:AD:DP:GQ:PL    0/1:10,11:21:99:279,0,249
22    21213416    rs1061064    A    G    244.87    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.789;DB;DP=25;Dels=0.0;FS=1.706;HRun=0;HaplotypeScore=0.5784;MQ=59.07;MQ0=0;MQRankSum=0.775;QD=9.79;ReadPosRankSum=2.445;SNPEFF_AMINO_ACID_CHANGE=K6;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21213271_21213635;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP29;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215730    GT:AD:DP:GQ:PL    0/1:16,9:25:99:275,0,510
22    21242247    rs3171741    G    C    117.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=56.82;MQ0=0;MQRankSum=-0.72;QD=19.51;ReadPosRankSum=-0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNAP29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439214    GT:AD:DP:GQ:PL    0/1:2,4:6:67.59:147,0,68
22    21287911    rs5752274    A    G    109.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354336    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:142,12,0
22    21303797    rs75177642    G    A    38.78    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.93;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354336    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
22    21311531    rs81027    C    T    91.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=13.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354336    GT:AD:DP:GQ:PL    1/1:0,6:7:9.03:124,9,0
22    21311721    rs178251    T    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRKL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354336    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
22    21322325    rs11334069    TC    T    189.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=8;HaplotypeScore=96.0103;IndelType=D;MQ=48.29;MQ0=0;QD=17.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479523    GT:AD:DP:GQ:PL    1/1:2,9:11:24.04:231,24,0
22    21322351    rs178254    T    C    110.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.14;MQ0=0;QD=15.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479523    GT:AD:DP:GQ:PL    1/1:0,7:7:12.04:143,12,0
22    21322409    rs2097674    C    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=8.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479523    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:67,6,0
22    21327589    rs178264    C    T    142.82    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.71;MQ0=0;QD=28.56;SNPEFF_AMINO_ACID_CHANGE=P15S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21327578_21327809;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405089    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
22    21327834    rs178265    C    G    443.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333607    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:476,36,0
22    21329123    rs733455    A    G    294.14    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=1.162;DB;DP=21;Dels=0.0;FS=2.318;HRun=1;HaplotypeScore=0.0;MQ=57.99;MQ0=0;MQRankSum=1.232;QD=14.01;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417515    GT:AD:DP:GQ:PL    0/1:10,11:21:99:324,0,304
22    21330179    rs178267    A    G    148.16    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=21.17;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417515    GT:AD:DP:GQ:PL    0/1:2,5:7:23.70:178,0,24
22    21330787    rs7285694    C    T    67.14    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.134;DB;DP=12;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.6;QD=5.6;ReadPosRankSum=0.536;SNPEFF_AMINO_ACID_CHANGE=A318;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21330697_21330827;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335375    GT:AD:DP:GQ:PL    0/1:8,4:12:97.13:97,0,259
22    21331043    rs178269    A    T    642.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.81;SNPEFF_AMINO_ACID_CHANGE=R366;SNPEFF_CODON_CHANGE=cgA/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21330940_21331055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335375    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:675,54,0
22    21331556    rs178271    T    C    110.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=65.19;MQ0=0;QD=27.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417515    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:143,12,0
22    21331918    rs178275    C    G    271.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417515    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:304,24,0
22    21331950    rs178276    C    G    422.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=26.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417515    GT:AD:DP:GQ:PL    1/1:0,16:16:36.09:456,36,0
22    21332122    rs178277    G    A    970.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=31.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417515    GT:AD:DP:GQ:PL    1/1:0,31:31:78.25:1004,78,0
22    21334924    rs105034    G    C    1404.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434714    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1438,105,0
22    21335259    rs178278    C    A    509.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434714    GT:AD:DP:GQ:PL    1/1:0,17:17:45.11:542,45,0
22    21337266    rs178280    G    A    893.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333607    GT:AD:DP:GQ:PL    1/1:0,28:28:72.20:926,72,0
22    21337415    rs178281    C    G    731.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=33.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333607    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:764,57,0
22    21342169    rs178289    G    C    32.77    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.46;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493460    GT:AD:DP:GQ:PL    0/1:4,2:6:62.76:63,0,110
22    21343391    rs67648101    G    C    51.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493460    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
22    21343982    rs67301055    TGGGGAGCCAGGGCGCAGGTAGAGGAGGTGAGGGGCAC    T    1029.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=579.0764;IndelType=D;MQ=61.01;MQ0=0;QD=60.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443265    GT:AD:DP:GQ:PL    1/1:5,12:17:36.12:1072,36,0
22    21344032    rs7410559    C    T    41.43    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=2.237;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.32;MQ0=0;MQRankSum=-0.386;QD=3.19;ReadPosRankSum=-1.157;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443265    GT:AD:DP:GQ:PL    0/1:4,9:13:62.74:71,0,63
22    21344592    rs55660821    A    C    957.86    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.1;DB;DP=56;Dels=0.0;FS=11.4;HRun=1;HaplotypeScore=0.9832;MQ=59.59;MQ0=0;MQRankSum=0.91;QD=17.1;ReadPosRankSum=-0.702;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443265    GT:AD:DP:GQ:PL    0/1:21,35:56:99:988,0,670
22    21344905    rs178290    A    G    512.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443265    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:545,39,0
22    21344920    rs17820542    G    C    135.93    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.831;QD=11.33;ReadPosRankSum=0.244;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443265    GT:AD:DP:GQ:PL    0/1:7,5:12:99:166,0,248
22    21346384    rs2072066    C    T    121.98    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=17.43;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414985    GT:AD:DP:GQ:PL    0/1:2,5:7:58.53:152,0,59
22    21346485    rs112544    T    C    527.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414985    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:560,42,0
22    21346719    rs756876    A    C    74.83    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=14.97;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414985    GT:AD:DP:GQ:PL    0/1:2,3:5:61.44:105,0,61
22    21348084    rs178291    T    C    223.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414985    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:256,21,0
22    21348914    rs4822790    C    T    398.26    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5226;MQ=60.0;MQ0=0;MQRankSum=1.147;QD=16.59;ReadPosRankSum=1.767;SNPEFF_AMINO_ACID_CHANGE=R520;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21348847_21349016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000539817    GT:AD:DP:GQ:PL    0/1:10,13:24:99:428,0,277
22    21349037    rs178292    A    G    488.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414985    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:522,42,0
22    21350461    rs178294    A    G    685.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=29.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414985    GT:AD:DP:GQ:PL    1/1:0,23:23:54.18:718,54,0
22    21350880    rs178295    T    C    105.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-1.453;QD=10.59;ReadPosRankSum=-0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LZTR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414985    GT:AD:DP:GQ:PL    0/1:5,5:10:99:136,0,180
22    21354970    rs426938    C    G    1449.94    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=1.894;DB;DP=102;Dels=0.0;FS=1.802;HRun=4;HaplotypeScore=0.0;MQ=59.09;MQ0=0;MQRankSum=-0.032;QD=14.22;ReadPosRankSum=1.257;SNPEFF_AMINO_ACID_CHANGE=A115P;SNPEFF_CODON_CHANGE=Gct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21354936_21355076;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=THAP7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215742    GT:AD:DP:GQ:PL    0/1:49,53:102:99:1480,0,1325
22    21363240    rs4820722    C    T    525.07    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=2.984;DB;DP=53;Dels=0.0;FS=4.045;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=-0.336;QD=9.91;ReadPosRankSum=2.089;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC002472.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292748    GT:AD:DP:GQ:PL    0/1:32,21:53:99:555,0,813
22    21363452    rs378449    A    G    536.84    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.371;DB;DP=47;Dels=0.0;FS=4.341;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.314;QD=11.42;ReadPosRankSum=0.098;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC002472.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292748    GT:AD:DP:GQ:PL    0/1:28,19:47:99:567,0,884
22    21363561    rs4820723    T    C    825.62    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=1.985;DB;DP=47;Dels=0.0;FS=2.588;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.463;QD=17.57;ReadPosRankSum=3.198;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AC002472.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292748    GT:AD:DP:GQ:PL    0/1:21,26:47:99:856,0,674
22    21372160    rs2073597    G    T    174.13    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.067;QD=19.35;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336296    GT:AD:DP:GQ:PL    0/1:2,7:9:58.33:204,0,58
22    21372374    rs55763104    G    A    692.63    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.301;DB;DP=57;Dels=0.0;FS=2.588;HRun=1;HaplotypeScore=0.7887;MQ=59.6;MQ0=0;MQRankSum=0.477;QD=12.15;ReadPosRankSum=-0.703;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336296    GT:AD:DP:GQ:PL    0/1:33,24:57:99:723,0,939
22    21372405    rs2073598    G    T    1424.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336296    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1458,111,0
22    21372467    rs2073599    C    G    127.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=9.79;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336296    GT:AD:DP:GQ:PL    0/1:7,6:13:99:157,0,247
22    21377301    rs1548411    C    A    2223.62    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DB;DP=71;Dels=0.0;FS=5.601;HRun=0;HaplotypeScore=1.9318;MQ=59.15;MQ0=0;MQRankSum=1.632;QD=31.32;ReadPosRankSum=1.481;SNPEFF_AMINO_ACID_CHANGE=P125;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21377231_21377324;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000443995    GT:AD:DP:GQ:PL    1/1:1,69:71:99:2257,140,0
22    21377650    rs2277838    G    A    1204.30    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.077;DB;DP=101;Dels=0.0;FS=5.069;HRun=0;HaplotypeScore=0.9469;MQ=59.54;MQ0=0;MQRankSum=-1.281;QD=11.92;ReadPosRankSum=1.309;SNPEFF_AMINO_ACID_CHANGE=R189H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21377564_21377705;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000443995    GT:AD:DP:GQ:PL    0/1:57,44:101:99:1234,0,1913
22    21377958    rs929671    A    C    137.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336296    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:170,12,0
22    21385843    rs2072549    G    A    139.02    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=17;Dels=0.0;FS=8.383;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=1.898;QD=8.18;ReadPosRankSum=-0.054;SNPEFF_AMINO_ACID_CHANGE=L87;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21385120_21386141;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382932    GT:AD:DP:GQ:PL    0/1:10,7:17:99:169,0,328
22    21396651    rs5762046    T    A    1183.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.55;MQ0=0;QD=34.8;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC002472.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342608    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1216,90,0
22    21396825    rs78731328    A    C    101.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=54.43;MQ0=0;QD=14.53;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC002472.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342608    GT:AD:DP:GQ:PL    1/1:0,7:7:12.01:134,12,0
22    21399187    rs396953    G    C    3850.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.36;MQ0=0;QD=29.17;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC002472.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342608    GT:AD:DP:GQ:PL    1/1:0,132:132:99:3850,319,0
22    21399278    rs2002814    T    C    764.24    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.161;DB;DP=79;Dels=0.0;FS=3.905;HRun=4;HaplotypeScore=1.6517;MQ=54.46;MQ0=0;MQRankSum=0.743;QD=9.67;ReadPosRankSum=-0.254;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC002472.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342608    GT:AD:DP:GQ:PL    0/1:47,32:79:99:794,0,1459
22    21401570    rs73164868    G    A    89.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC002472.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342608    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
22    21401833    rs73164869    C    T    242.53    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.929;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;MQRankSum=-2.083;QD=18.66;ReadPosRankSum=-0.849;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC002472.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342608    GT:AD:DP:GQ:PL    0/1:4,9:13:43.74:273,0,44
22    21403226    rs73164871    G    C    141.28    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.64;MQ0=0;MQRankSum=0.742;QD=17.66;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC002472.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342608    GT:AD:DP:GQ:PL    0/1:1,7:8:18.92:171,0,19
22    21411598    rs46148    T    C    214.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC002472.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342608    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:248,18,0
22    21470346    .    G    C    152.14    MQFilter40    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.165;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6988;MQ=16.78;MQ0=9;MQRankSum=-2.575;QD=2.82;ReadPosRankSum=0.136;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCRP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447763    GT:AD:DP:GQ:PL    0/1:12,42:54:99:182,0,193
22    21537690    rs12172244    C    G    62.07    MQFilter40;QDFilter2    AB=0.841;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=44;Dels=0.0;FS=10.307;HRun=2;HaplotypeScore=2.8185;MQ=22.66;MQ0=14;MQRankSum=2.685;QD=1.41;ReadPosRankSum=0.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:37,7:44:92.07:92,0,432
22    21537706    rs9754324    T    G    208.47    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.89;MQ0=16;QD=6.95;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000433014    GT:AD:DP:GQ:PL    1/1:0,30:30:24.02:241,24,0
22    21537817    rs9754477    A    G    80.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.38;MQ0=3;QD=10.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    1/1:0,8:8:11.99:113,12,0
22    21537918    .    C    A    145.51    MQFilter40    AB=0.612;AC=1;AF=0.50;AN=2;BaseQRankSum=1.784;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=7.5675;MQ=15.17;MQ0=21;MQRankSum=-0.581;QD=2.69;ReadPosRankSum=2.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:30,19:54:99:175,0,164
22    21537972    .    C    A    117.06    HaplotypeScoreFilter13;MQFilter40    AB=0.676;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DP=43;Dels=0.0;FS=24.376;HRun=2;HaplotypeScore=14.4398;MQ=26.17;MQ0=8;MQRankSum=1.768;QD=2.72;ReadPosRankSum=-1.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:25,12:43:99:147,0,271
22    21537977    .    G    A    361.78    HaplotypeScoreFilter13;MQFilter40    AB=0.314;AC=1;AF=0.50;AN=2;BaseQRankSum=0.528;DP=39;Dels=0.0;FS=2.048;HRun=0;HaplotypeScore=18.7952;MQ=28.35;MQ0=4;MQRankSum=1.399;QD=9.28;ReadPosRankSum=-0.436;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:11,24:39:99:392,0,182
22    21537999    rs111819170    A    G    614.31    MQFilter40    AB=0.302;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.328;DB;DP=45;Dels=0.0;FS=6.026;HRun=1;HaplotypeScore=5.5711;MQ=34.34;MQ0=3;MQRankSum=1.42;QD=13.65;ReadPosRankSum=1.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:13,30:45:99:644,0,171
22    21538023    .    T    C    81.40    MQFilter40;QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.872;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8938;MQ=38.84;MQ0=2;MQRankSum=-2.694;QD=1.63;ReadPosRankSum=0.898;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:40,10:50:99:111,0,1144
22    21538046    .    T    C    233.42    MQFilter40    AB=0.772;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.767;DP=57;Dels=0.0;FS=2.893;HRun=1;HaplotypeScore=0.9983;MQ=37.71;MQ0=5;MQRankSum=0.313;QD=4.1;ReadPosRankSum=1.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:44,13:57:99:263,0,1076
22    21538071    .    C    A    95.14    MQFilter40;QDFilter2    AB=0.825;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.185;DP=57;Dels=0.0;FS=4.251;HRun=1;HaplotypeScore=11.7598;MQ=36.38;MQ0=8;MQRankSum=0.475;QD=1.67;ReadPosRankSum=0.238;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:47,10:57:99:125,0,1068
22    21538079    rs62240903    A    G    276.04    MQFilter40    AB=0.677;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.812;DB;DP=62;Dels=0.0;FS=7.035;HRun=0;HaplotypeScore=8.8162;MQ=36.78;MQ0=9;MQRankSum=-0.272;QD=4.45;ReadPosRankSum=-1.024;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:42,20:62:99:306,0,925
22    21538161    rs111441301    C    T    79.82    QDFilter2    AB=0.881;AC=1;AF=0.50;AN=2;BaseQRankSum=0.839;DB;DP=59;Dels=0.0;FS=3.83;HRun=0;HaplotypeScore=1.992;MQ=42.64;MQ0=3;MQRankSum=1.913;QD=1.35;ReadPosRankSum=1.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:52,7:59:99:110,0,1069
22    21538382    .    G    A    44.59    MQFilter40;QDFilter2    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.9929;MQ=18.9;MQ0=11;MQRankSum=-1.402;QD=1.21;ReadPosRankSum=-1.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:18,14:37:74.58:75,0,214
22    21538409    rs75970309    A    G    167.35    MQFilter40    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.773;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.6643;MQ=20.54;MQ0=8;MQRankSum=2.167;QD=5.4;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:15,16:31:92.24:197,0,92
22    21538503    .    C    A    51.99    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9867;MQ=22.27;MQ0=2;MQRankSum=-0.751;QD=4.33;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=antisense;SNPEFF_GENE_NAME=KB-1183D5.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421576    GT:AD:DP:GQ:PL    0/1:4,8:12:9.72:82,0,10
22    21563244    .    C    T    223.81    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.531;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=14.02;MQ0=20;MQRankSum=-0.102;QD=6.05;ReadPosRankSum=-1.327;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401924    GT:AD:DP:GQ:PL    1/1:15,22:37:8.30:256,8,0
22    21570474    rs2329684    A    G    50.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.6;MQ0=7;QD=5.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401924    GT:AD:DP:GQ:PL    1/1:0,10:10:9.01:83,9,0
22    21570832    rs4051636    A    G    30.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=14.3;MQ0=7;QD=2.56;SNPEFF_AMINO_ACID_CHANGE=P169;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21570760_21570956;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401924    GT:AD:DP:GQ:PL    1/1:0,12:12:6.01:62,6,0
22    21637121    .    G    A    59.19    MQFilter40;QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=2.729;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.7003;MQ=24.73;MQ0=4;MQRankSum=2.044;QD=1.14;ReadPosRankSum=-1.028;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=POM121L8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417732    GT:AD:DP:GQ:PL    0/1:42,10:52:89.18:89,0,412
22    21637887    rs71244660    C    T    31.32    MQFilter40;QDFilter2    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=2.002;DB;DP=128;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=6.26;MQ0=100;MQRankSum=1.937;QD=0.24;ReadPosRankSum=1.215;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=POM121L8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417732    GT:AD:DP:GQ:PL    0/1:106,22:128:9.70:61,0,10
22    21638479    .    G    A    111.36    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=6.319;DP=201;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=14.3838;MQ=8.9;MQ0=127;MQRankSum=0.923;QD=0.55;ReadPosRankSum=-1.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=POM121L8P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417732    GT:AD:DP:GQ:PL    0/1:143,58:201:99:141,0,279
22    21663482    rs12160890    G    C    67.11    MQFilter40;QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=1.105;DB;DP=44;Dels=0.0;FS=2.021;HRun=1;HaplotypeScore=1.9399;MQ=30.84;MQ0=6;MQRankSum=0.717;QD=1.53;ReadPosRankSum=0.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=KB-1183D5.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416405    GT:AD:DP:GQ:PL    0/1:34,10:44:97.11:97,0,596
22    21663537    .    T    A    63.94    MQFilter40    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.26;DP=30;Dels=0.0;FS=8.475;HRun=0;HaplotypeScore=4.9003;MQ=34.81;MQ0=0;MQRankSum=-0.664;QD=2.13;ReadPosRankSum=-1.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=KB-1183D5.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416405    GT:AD:DP:GQ:PL    0/1:25,5:30:93.93:94,0,576
22    21663552    rs62236681    G    A    138.22    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.076;DB;DP=29;Dels=0.0;FS=12.555;HRun=0;HaplotypeScore=0.0;MQ=33.89;MQ0=1;MQRankSum=-0.778;QD=4.77;ReadPosRankSum=-0.934;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=KB-1183D5.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416405    GT:AD:DP:GQ:PL    0/1:16,12:29:99:168,0,422
22    21663626    rs673334    T    G    102.76    MQFilter40    AB=0.345;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=17.06;MQ0=7;MQRankSum=-1.469;QD=3.54;ReadPosRankSum=-0.267;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=KB-1183D5.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416405    GT:AD:DP:GQ:PL    0/1:10,19:29:99:133,0,129
22    21663692    rs673747    G    A    32.01    MQFilter40;QDFilter2    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.66;DB;DP=32;Dels=0.0;FS=3.136;HRun=0;HaplotypeScore=3.6154;MQ=18.78;MQ0=19;MQRankSum=-1.093;QD=1.0;ReadPosRankSum=0.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=KB-1183D5.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416405    GT:AD:DP:GQ:PL    0/1:17,14:32:62:62,0,85
22    21666157    .    T    G    360.60    MQFilter40    AC=2;AF=1.00;AN=2;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.48;MQ0=20;QD=10.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=KB-1183D5.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416405    GT:AD:DP:GQ:PL    1/1:14,20:34:41.91:394,42,0
22    21724377    rs72613702    G    A    91.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.28;MQ0=1;QD=13.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=KB-1183D5.16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422450    GT:AD:DP:GQ:PL    1/1:0,7:7:12.01:124,12,0
22    21742684    .    C    T    61.24    MQFilter40;QDFilter2    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.359;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.81;MQ0=80;MQRankSum=-0.78;QD=0.52;ReadPosRankSum=0.716;SNPEFF_AMINO_ACID_CHANGE=R1419C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21738293_21743767;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIMBP3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357029    GT:AD:DP:GQ:PL    0/1:57,61:118:91.23:91,0,210
22    21800042    rs467181    T    C    1476.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.4679;MQ=56.12;MQ0=0;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=A286;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21799211_21805752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407464    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1510,120,0
22    21800444    rs128477    T    C    1507.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=H420;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21799211_21805752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HIC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407464    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1541,120,0
22    21829480    rs402694    G    T    43.42    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.55;MQ0=1;QD=4.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=KB-1323B2.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449424    GT:AD:DP:GQ:PL    1/1:0,10:10:6.02:75,6,0
22    21838277    .    C    T    60.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.0;MQ0=9;QD=4.04;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PI4KAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360806    GT:AD:DP:GQ:PL    1/1:0,15:15:9.01:93,9,0
22    21838301    .    C    T    34.75    MQFilter40    AC=2;AF=1.00;AN=2;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=13.1;MQ0=9;QD=2.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PI4KAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360806    GT:AD:DP:GQ:PL    1/1:0,13:13:6.01:66,6,0
22    21842655    rs143994138    C    T    139.86    MQFilter40;QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=7.61;MQ0=56;QD=1.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PI4KAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476537    GT:AD:DP:GQ:PL    1/1:17,55:72:20.97:173,21,0
22    21842813    rs116999122    C    T    430.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.82;MQ0=2;QD=20.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PI4KAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476537    GT:AD:DP:GQ:PL    1/1:2,19:21:53.93:463,54,0
22    21982892    rs2298428    C    T    136.24    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=15.14;ReadPosRankSum=0.742;SNPEFF_AMINO_ACID_CHANGE=A263T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21982378_21983076;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=YDJC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000292778    GT:AD:DP:GQ:PL    0/1:1,7:9:14.45:166,0,14
22    21984205    rs710177    A    G    179.20    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.475;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.627;QD=12.8;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=A33;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_21984140_21984353;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=YDJC;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000292778    GT:AD:DP:GQ:PL    0/1:6,8:14:99:209,0,139
22    21984379    rs3747093    G    A    69.92    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.198;QD=9.99;ReadPosRankSum=-1.495;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC116;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000292779    GT:AD:DP:GQ:PL    0/1:2,5:7:68.24:100,0,68
22    22025476    rs108815    A    G    233.06    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.89;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.887;QD=11.65;ReadPosRankSum=0.347;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496819    GT:AD:DP:GQ:PL    0/1:12,8:20:99:263,0,428
22    22041839    rs36108489    C    CA    51.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;DB;DP=23;FS=0.0;HRun=21;HaplotypeScore=191.7003;IndelType=I;MQ=41.36;MQ0=0;MQRankSum=-0.572;QD=2.25;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484439    GT:AD:DP:GQ:PL    1/1:14,6:23:2.53:91,3,0
22    22042079    rs741617    G    T    282.02    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=0.463;QD=11.75;ReadPosRankSum=0.463;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484439    GT:AD:DP:GQ:PL    0/1:13,11:24:99:312,0,448
22    22042918    rs2278118    C    T    186.76    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.581;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.42;QD=8.12;ReadPosRankSum=0.936;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484439    GT:AD:DP:GQ:PL    0/1:15,8:23:99:217,0,517
22    22048770    rs2070504    C    G    104.38    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=14.91;ReadPosRankSum=-1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339468    GT:AD:DP:GQ:PL    0/1:3,4:7:64.82:134,0,65
22    22048862    rs5999098    C    T    385.06    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.375;DB;DP=29;Dels=0.0;FS=1.664;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.331;QD=13.28;ReadPosRankSum=0.153;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339468    GT:AD:DP:GQ:PL    0/1:15,14:29:99:415,0,499
22    22055394    rs1860    A    G    535.01    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.666;DB;DP=44;Dels=0.0;FS=2.835;HRun=0;HaplotypeScore=0.0;MQ=59.48;MQ0=0;MQRankSum=1.457;QD=12.16;ReadPosRankSum=0.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335025    GT:AD:DP:GQ:PL    0/1:21,23:44:99:565,0,608
22    22055581    rs861816    C    A    80.89    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=1.312;DB;DP=13;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=1.6316;MQ=56.35;MQ0=0;MQRankSum=1.929;QD=6.22;ReadPosRankSum=-1.774;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPIL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335025    GT:AD:DP:GQ:PL    0/1:4,9:13:52.36:111,0,52
22    22058355    rs2236643    A    G    1815.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5149;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YPEL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403503    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1848,141,0
22    22142954    rs56080243    C    T    1481.29    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.044;DB;DP=108;Dels=0.0;FS=0.781;HRun=1;HaplotypeScore=3.5213;MQ=60.0;MQ0=0;MQRankSum=0.857;QD=13.72;ReadPosRankSum=-0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215832    GT:AD:DP:GQ:PL    0/1:55,53:108:99:1511,0,1764
22    22348689    rs238774    A    G    1192.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=36.13;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=PRAMEL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337471    GT:AD:DP:GQ:PL    1/1:0,33:33:93.30:1225,93,0
22    22453513    rs9611014    C    T    1485.62    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=3.459;DB;DP=116;Dels=0.0;FS=5.959;HRun=1;HaplotypeScore=5.8413;MQ=59.2;MQ0=0;MQRankSum=1.436;QD=12.81;ReadPosRankSum=0.422;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV8-61;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390283    GT:AD:DP:GQ:PL    0/1:64,52:116:99:1516,0,1795
22    22469320    rs34734590    T    C    67.64    MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=18;Dels=0.0;FS=3.041;HRun=2;HaplotypeScore=0.0;MQ=34.58;MQ0=2;MQRankSum=-1.202;QD=3.76;ReadPosRankSum=-0.212;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM108A6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333131    GT:AD:DP:GQ:PL    0/1:10,8:18:97.64:98,0,263
22    22472330    rs11703167    C    T    317.37    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=1.379;DB;DP=24;Dels=0.0;FS=7.025;HRun=0;HaplotypeScore=0.9789;MQ=57.93;MQ0=0;MQRankSum=-0.657;QD=13.22;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM108A6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333131    GT:AD:DP:GQ:PL    0/1:12,11:24:99:347,0,292
22    22472480    rs13053391    G    T    70.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=17.68;ReadPosRankSum=0.727;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=FAM108A6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333131    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:101,0,30
22    22516883    rs34221567    TC    T    803.19    PASS    AB=0.641;AC=1;AF=0.50;AN=2;BaseQRankSum=4.348;DB;DP=41;FS=14.224;HRun=1;HaplotypeScore=128.2645;IndelType=D;MQ=58.98;MQ0=0;MQRankSum=0.092;QD=19.59;ReadPosRankSum=-0.328;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-30E12.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440562    GT:AD:DP:GQ:PL    0/1:18,23:41:99:842,0,716
22    22516998    rs2073453    C    T    360.27    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=2.163;DB;DP=32;Dels=0.0;FS=5.782;HRun=0;HaplotypeScore=0.9665;MQ=58.4;MQ0=0;MQRankSum=0.02;QD=11.26;ReadPosRankSum=-1.449;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-30E12.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440562    GT:AD:DP:GQ:PL    0/1:18,14:32:99:390,0,570
22    22517026    rs738885    T    C    902.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.07;MQ0=0;QD=30.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV4-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390284    GT:AD:DP:GQ:PL    1/1:0,30:30:72.19:936,72,0
22    22517136    rs737840    C    G    146.98    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=9;Dels=0.0;FS=4.26;HRun=0;HaplotypeScore=1.7074;MQ=56.85;MQ0=0;MQRankSum=0.876;QD=16.33;ReadPosRankSum=-1.307;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV4-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390284    GT:AD:DP:GQ:PL    0/1:4,5:9:99:177,0,103
22    22517162    rs737841    T    A    81.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=10.15;ReadPosRankSum=-0.421;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV4-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390284    GT:AD:DP:GQ:PL    0/1:4,4:8:99:111,0,147
22    22517205    rs737842    A    G    73.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.51;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV4-60;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390284    GT:AD:DP:GQ:PL    0/1:4,3:7:99:104,0,146
22    22550339    rs9623052    G    C    244.19    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=14;Dels=0.0;FS=5.88;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.267;QD=17.44;ReadPosRankSum=1.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV6-57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390285    GT:AD:DP:GQ:PL    0/1:5,9:14:99:274,0,142
22    22550401    rs11705157    C    G    245.92    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.739;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.2;MQ0=0;MQRankSum=-0.666;QD=8.48;ReadPosRankSum=-0.222;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV6-57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390285    GT:AD:DP:GQ:PL    0/1:16,13:29:99:276,0,441
22    22550510    rs2073448    T    G    567.35    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.412;DB;DP=37;Dels=0.0;FS=3.366;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.704;QD=15.33;ReadPosRankSum=-0.211;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV6-57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390285    GT:AD:DP:GQ:PL    0/1:15,22:37:99:597,0,458
22    22550760    rs5757323    A    G    278.98    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.694;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=16.41;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV6-57;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390285    GT:AD:DP:GQ:PL    0/1:8,9:17:99:309,0,248
22    22569448    rs5750741    T    A    342.61    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.645;QD=12.24;ReadPosRankSum=0.967;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV10-54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390287    GT:AD:DP:GQ:PL    0/1:15,13:28:99:373,0,478
22    22569554    rs6001413    C    A    530    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.718;DB;DP=40;Dels=0.0;FS=4.646;HRun=0;HaplotypeScore=0.9469;MQ=59.53;MQ0=0;MQRankSum=-0.257;QD=13.25;ReadPosRankSum=1.123;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV10-54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390287    GT:AD:DP:GQ:PL    0/1:20,20:40:99:560,0,604
22    22569640    rs6001415    T    G    562.49    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=1.234;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=0.716;QD=15.2;ReadPosRankSum=2.606;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV10-54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390287    GT:AD:DP:GQ:PL    0/1:17,20:37:99:592,0,531
22    22569758    rs1007312    A    C    92.84    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=15.47;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV10-54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390287    GT:AD:DP:GQ:PL    0/1:2,4:6:61.76:123,0,62
22    22577869    .    A    G    59.19    MQFilter40    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=2.228;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=16.98;MQ0=13;MQRankSum=0.896;QD=2.47;ReadPosRankSum=-0.597;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLVIV-53;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520107    GT:AD:DP:GQ:PL    0/1:13,11:24:89.19:89,0,129
22    22599057    rs5757643    A    G    54.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=9.13;ReadPosRankSum=0.406;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPREB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302273    GT:AD:DP:GQ:PL    0/1:3,3:6:84.77:85,0,101
22    22599380    rs9619852    G    A    869.34    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.221;DB;DP=60;Dels=0.0;FS=0.997;HRun=0;HaplotypeScore=0.9734;MQ=58.45;MQ0=0;MQRankSum=0.768;QD=14.49;ReadPosRankSum=0.525;SNPEFF_AMINO_ACID_CHANGE=L22;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22599372_22599917;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VPREB1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302273    GT:AD:DP:GQ:PL    0/1:27,33:60:99:899,0,748
22    22657557    rs1807696    G    C    138.15    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=27;Dels=0.0;FS=2.199;HRun=0;HaplotypeScore=5.5857;MQ=42.8;MQ0=2;MQRankSum=-4.093;QD=5.12;ReadPosRankSum=0.031;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:12,13:27:99:168,0,424
22    22657630    .    G    A    130.86    MQFilter40    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.002;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=39.43;MQ0=2;MQRankSum=-3.537;QD=3.64;ReadPosRankSum=2.826;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:22,14:36:99:161,0,505
22    22657656    .    T    C    120.19    MQFilter40    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.156;DP=30;Dels=0.0;FS=1.999;HRun=0;HaplotypeScore=0.0;MQ=39.06;MQ0=2;MQRankSum=-3.373;QD=4.01;ReadPosRankSum=-0.156;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:17,13:30:99:150,0,399
22    22661173    rs7410785    T    C    450.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.041;DB;DP=52;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=5.091;MQ=55.37;MQ0=0;MQRankSum=0.929;QD=8.67;ReadPosRankSum=-0.103;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:26,26:52:99:481,0,741
22    22661318    rs1044437    T    C    1291.26    HaplotypeScoreFilter13    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.999;DB;DP=96;Dels=0.0;FS=1.769;HRun=1;HaplotypeScore=17.3765;MQ=52.8;MQ0=7;MQRankSum=2.582;QD=13.45;ReadPosRankSum=-0.521;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:53,43:96:99:1321,0,1229
22    22661444    rs62226824    A    G    202.19    QDFilter2    AB=0.71;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.367;DB;DP=138;Dels=0.0;FS=10.406;HRun=0;HaplotypeScore=4.8457;MQ=40.69;MQ0=10;MQRankSum=-6.307;QD=1.47;ReadPosRankSum=3.054;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:98,40:138:99:232,0,2949
22    22661626    rs2329974    T    C    1874.14    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.254;DB;DP=142;Dels=0.0;FS=2.195;HRun=0;HaplotypeScore=5.1501;MQ=57.01;MQ0=0;MQRankSum=-0.603;QD=13.2;ReadPosRankSum=-0.946;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:66,76:142:99:1904,0,1952
22    22661662    rs1044448    A    T    1390.25    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.153;DB;DP=105;Dels=0.0;FS=0.787;HRun=2;HaplotypeScore=1.6643;MQ=57.55;MQ0=0;MQRankSum=1.118;QD=13.24;ReadPosRankSum=-0.368;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:56,49:105:99:1420,0,1772
22    22663086    rs1054157    T    G    65.09    QDFilter2    AB=0.803;AC=1;AF=0.50;AN=2;BaseQRankSum=0.455;DB;DP=61;Dels=0.0;FS=5.503;HRun=0;HaplotypeScore=0.0;MQ=52.39;MQ0=1;MQRankSum=-4.96;QD=1.07;ReadPosRankSum=-0.232;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:49,12:61:95.09:95,0,1555
22    22663087    rs1054158    A    G    65.09    QDFilter2    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.834;DB;DP=60;Dels=0.0;FS=5.642;HRun=0;HaplotypeScore=0.0;MQ=52.25;MQ0=1;MQRankSum=-4.951;QD=1.08;ReadPosRankSum=-0.422;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:48,12:60:95.09:95,0,1558
22    22663216    rs62226825    A    G    640.99    PASS    AB=0.465;AC=1;AF=0.50;AN=2;BaseQRankSum=0.524;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.7;MQ0=0;MQRankSum=-3.251;QD=14.91;ReadPosRankSum=-1.814;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:20,23:43:99:671,0,625
22    22664158    rs7284467    G    A    350.28    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.425;DB;DP=40;Dels=0.0;FS=4.901;HRun=0;HaplotypeScore=5.8481;MQ=52.62;MQ0=0;MQRankSum=0.922;QD=8.76;ReadPosRankSum=-0.279;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:25,15:40:99:380,0,746
22    22664216    rs148023020    G    A    88.90    PASS    AB=0.76;AC=1;AF=0.50;AN=2;BaseQRankSum=0.159;DB;DP=25;Dels=0.0;FS=5.251;HRun=0;HaplotypeScore=0.9983;MQ=52.44;MQ0=0;MQRankSum=-1.559;QD=3.56;ReadPosRankSum=-0.541;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413293    GT:AD:DP:GQ:PL    0/1:19,6:25:99:119,0,585
22    22673639    rs737765    T    C    627.77    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=2.309;DB;DP=62;Dels=0.0;FS=3.481;HRun=1;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-2.309;QD=10.13;ReadPosRankSum=0.345;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390289    GT:AD:DP:GQ:PL    0/1:39,23:62:99:658,0,1246
22    22676951    .    T    C    409.89    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=0.093;DP=24;Dels=0.0;FS=3.617;HRun=0;HaplotypeScore=0.0;MQ=48.02;MQ0=0;MQRankSum=2.388;QD=17.08;ReadPosRankSum=-1.023;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390289    GT:AD:DP:GQ:PL    0/1:10,13:24:99:440,0,271
22    22676970    rs6001803    T    C    417.45    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=4.289;DB;DP=31;Dels=0.0;FS=2.222;HRun=1;HaplotypeScore=0.9997;MQ=51.28;MQ0=0;MQRankSum=1.245;QD=13.47;ReadPosRankSum=1.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-52;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390289    GT:AD:DP:GQ:PL    0/1:16,15:31:99:447,0,495
22    22681721    rs12484322    T    C    116.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.133;DB;DP=10;Dels=0.0;FS=3.31;HRun=1;HaplotypeScore=0.0;MQ=52.56;MQ0=0;MQRankSum=0.365;QD=11.67;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV1-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390290    GT:AD:DP:GQ:PL    0/1:4,6:10:99:147,0,133
22    22681765    rs3819309    G    A    248.70    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.755;DB;DP=19;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;MQRankSum=-0.122;QD=13.09;ReadPosRankSum=-0.122;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV1-51;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390290    GT:AD:DP:GQ:PL    0/1:10,9:19:99:279,0,354
22    22698027    rs1894246    A    G    428.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=30.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-80A10.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436538    GT:AD:DP:GQ:PL    1/1:0,14:14:36.09:462,36,0
22    22707275    rs5995854    C    A    71.81    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=56.82;MQ0=0;MQRankSum=0.406;QD=11.97;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-75A1.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440829    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,101
22    22707299    rs34503659    A    C    69.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=-1.3;QD=9.92;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-75A1.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440829    GT:AD:DP:GQ:PL    0/1:4,3:7:99:99,0,139
22    22707309    rs35779014    C    T    31.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.28;MQ0=0;MQRankSum=0.72;QD=4.57;ReadPosRankSum=1.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-75A1.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440829    GT:AD:DP:GQ:PL    0/1:4,3:7:61.95:62,0,147
22    22707388    rs73153800    T    C    201.20    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=1.95;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5731;MQ=54.81;MQ0=0;MQRankSum=-1.262;QD=6.94;ReadPosRankSum=1.078;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-75A1.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440829    GT:AD:DP:GQ:PL    0/1:19,10:29:99:231,0,691
22    22707429    rs73153802    T    C    649.46    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=4.128;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.34;MQ0=0;MQRankSum=-0.729;QD=9.99;ReadPosRankSum=1.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-75A1.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440829    GT:AD:DP:GQ:PL    0/1:40,25:65:99:679,0,1293
22    22707443    rs75417423    T    A    728.97    HaplotypeScoreFilter13    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=3.739;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=32.644;MQ=54.09;MQ0=0;MQRankSum=-3.629;QD=8.68;ReadPosRankSum=-0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-75A1.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440829    GT:AD:DP:GQ:PL    0/1:49,35:84:99:759,0,1606
22    22707452    rs113847228    G    GT    1070.27    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=7.706;DB;DP=90;FS=2.332;HRun=2;HaplotypeScore=560.3469;IndelType=I;MQ=55.11;MQ0=0;MQRankSum=-3.094;QD=11.63;ReadPosRankSum=0.541;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-75A1.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440829    GT:AD:DP:GQ:PL    0/1:58,34:90:99:1109,0,1784
22    22707473    rs74549497    C    G    885.38    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.843;DB;DP=108;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.1526;MQ=55.04;MQ0=0;MQRankSum=-3.713;QD=8.2;ReadPosRankSum=-0.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-75A1.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440829    GT:AD:DP:GQ:PL    0/1:66,42:108:99:915,0,2126
22    22707555    rs79612806    A    G    655.82    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.5176;MQ=50.68;MQ0=0;MQRankSum=-5.758;QD=6.56;ReadPosRankSum=-0.014;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:55,45:100:99:686,0,1775
22    22707557    .    C    G    650.44    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.159;DP=98;Dels=0.0;FS=0.934;HRun=0;HaplotypeScore=2.9393;MQ=51.32;MQ0=0;MQRankSum=-5.043;QD=6.64;ReadPosRankSum=0.535;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:56,42:98:99:680,0,1776
22    22707576    rs117042445    T    A    494.91    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.412;DB;DP=86;Dels=0.0;FS=1.035;HRun=0;HaplotypeScore=0.0;MQ=50.07;MQ0=0;MQRankSum=-6.333;QD=5.75;ReadPosRankSum=-2.088;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:50,36:86:99:525,0,1657
22    22707696    rs73880635    G    C    213.04    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=71;Dels=0.0;FS=9.68;HRun=1;HaplotypeScore=0.7887;MQ=51.27;MQ0=10;MQRankSum=-4.073;QD=3.0;ReadPosRankSum=-0.935;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:47,24:71:99:243,0,1412
22    22707713    rs73880637    G    T    335.43    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=78;Dels=0.0;FS=14.327;HRun=1;HaplotypeScore=0.9734;MQ=49.88;MQ0=12;MQRankSum=-5.09;QD=4.3;ReadPosRankSum=0.194;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:48,30:78:99:365,0,1482
22    22707728    rs148013584    C    T    340.14    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.088;DB;DP=79;Dels=0.0;FS=17.981;HRun=0;HaplotypeScore=0.0;MQ=50.37;MQ0=12;MQRankSum=-5.007;QD=4.31;ReadPosRankSum=2.673;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:50,29:79:99:370,0,1597
22    22707782    rs76446997    T    C    549.57    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=3.536;DB;DP=74;Dels=0.0;FS=9.027;HRun=0;HaplotypeScore=0.9159;MQ=51.98;MQ0=3;MQRankSum=-5.431;QD=7.43;ReadPosRankSum=-0.811;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:44,30:74:99:580,0,1355
22    22707814    rs116843465    A    G    576.68    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=2.477;DB;DP=48;Dels=0.0;FS=1.458;HRun=0;HaplotypeScore=0.0;MQ=52.79;MQ0=0;MQRankSum=-4.189;QD=12.01;ReadPosRankSum=0.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:25,23:48:99:607,0,790
22    22707820    rs115740254    T    C    577.10    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.733;DB;DP=49;Dels=0.0;FS=3.13;HRun=1;HaplotypeScore=0.9665;MQ=52.95;MQ0=0;MQRankSum=-4.357;QD=11.78;ReadPosRankSum=1.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:26,23:49:99:607,0,834
22    22707835    rs66941350    G    GT    782.51    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=5.464;DB;DP=41;FS=9.709;HRun=1;HaplotypeScore=319.1405;IndelType=I;MQ=52.91;MQ0=0;MQRankSum=-2.569;QD=19.09;ReadPosRankSum=1.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:20,21:41:99:822,0,656
22    22712276    rs5757971    A    G    802.18    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.988;DB;DP=78;Dels=0.0;FS=4.291;HRun=0;HaplotypeScore=0.8321;MQ=46.68;MQ0=3;MQRankSum=-0.515;QD=10.28;ReadPosRankSum=0.292;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:43,35:78:99:832,0,1137
22    22712467    rs5757973    T    G    2320.01    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=7.491;DB;DP=230;Dels=0.0;FS=0.494;HRun=1;HaplotypeScore=0.0;MQ=48.76;MQ0=4;MQRankSum=-0.384;QD=10.09;ReadPosRankSum=0.946;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-48;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390293    GT:AD:DP:GQ:PL    0/1:140,90:230:99:2350,0,3931
22    22724135    rs11324703    GT    G    357.29    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=3.134;DB;DP=33;FS=5.748;HRun=8;HaplotypeScore=83.6759;IndelType=D;MQ=59.63;MQ0=0;MQRankSum=0.038;QD=10.83;ReadPosRankSum=-0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-22A12.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453999    GT:AD:DP:GQ:PL    0/1:15,18:33:99:396,0,447
22    22724394    rs7292000    T    C    445.07    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.226;DB;DP=30;Dels=0.0;FS=1.367;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.102;QD=14.84;ReadPosRankSum=0.686;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=LL22NC03-22A12.9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453999    GT:AD:DP:GQ:PL    0/1:14,16:30:99:475,0,422
22    22730504    rs738121    C    T    347.20    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=21;Dels=0.0;FS=3.468;HRun=3;HaplotypeScore=0.9979;MQ=58.89;MQ0=0;MQRankSum=0.228;QD=16.53;ReadPosRankSum=-0.836;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390296    GT:AD:DP:GQ:PL    0/1:9,11:21:99:377,0,314
22    22730619    rs61731379    T    A    41.52    QDFilter2    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=1.167;DB;DP=73;Dels=0.0;FS=5.875;HRun=0;HaplotypeScore=0.8667;MQ=55.89;MQ0=1;MQRankSum=-4.784;QD=0.57;ReadPosRankSum=-2.878;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390296    GT:AD:DP:GQ:PL    0/1:61,10:73:71.51:72,0,2087
22    22730634    rs2009587    G    A    882.14    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.926;DB;DP=77;Dels=0.0;FS=1.936;HRun=0;HaplotypeScore=1.5317;MQ=56.11;MQ0=1;MQRankSum=1.414;QD=11.46;ReadPosRankSum=0.507;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390296    GT:AD:DP:GQ:PL    0/1:43,34:77:99:912,0,1267
22    22730648    .    A    G    33.19    QDFilter2    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=2.291;DP=77;Dels=0.0;FS=5.438;HRun=0;HaplotypeScore=0.9983;MQ=55.79;MQ0=1;MQRankSum=-4.753;QD=0.43;ReadPosRankSum=3.823;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390296    GT:AD:DP:GQ:PL    0/1:67,10:77:63.18:63,0,2230
22    22730657    .    C    G    42.24    QDFilter2    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=3.102;DP=71;Dels=0.0;FS=5.406;HRun=0;HaplotypeScore=0.9983;MQ=55.88;MQ0=0;MQRankSum=-4.727;QD=0.59;ReadPosRankSum=4.191;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-45;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390296    GT:AD:DP:GQ:PL    0/1:62,9:71:72.24:72,0,2026
22    22735736    rs448848    A    G    1626.06    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=111;Dels=0.0;FS=1.91;HRun=3;HaplotypeScore=0.9578;MQ=52.63;MQ0=0;MQRankSum=-1.565;QD=14.65;ReadPosRankSum=-0.471;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV1-44;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390297    GT:AD:DP:GQ:PL    0/1:47,64:111:99:1656,0,1536
22    22782150    rs56060925    G    A    1337.60    PASS    AB=0.361;AC=1;AF=0.50;AN=2;BaseQRankSum=0.319;DB;DP=72;Dels=0.0;FS=0.942;HRun=0;HaplotypeScore=2.996;MQ=59.68;MQ0=0;MQRankSum=0.503;QD=18.58;ReadPosRankSum=-0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLVI-38;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519982    GT:AD:DP:GQ:PL    0/1:26,46:72:99:1368,0,733
22    22782394    rs165704    A    G    3620.85    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DB;DP=123;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=4.4208;MQ=59.34;MQ0=0;MQRankSum=2.386;QD=29.44;ReadPosRankSum=-1.058;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390300    GT:AD:DP:GQ:PL    1/1:3,120:123:99:3621,196,0
22    22786410    rs165657    C    T    234.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.424;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.27;QD=11.7;ReadPosRankSum=-0.887;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV5-37;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390300    GT:AD:DP:GQ:PL    0/1:12,8:20:99:264,0,439
22    22842206    rs11109    T    C    2647.18    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.427;DB;DP=79;Dels=0.0;FS=4.184;HRun=0;HaplotypeScore=1.9865;MQ=60.0;MQ0=0;MQRankSum=-1.192;QD=33.51;ReadPosRankSum=1.597;SNPEFF_AMINO_ACID_CHANGE=S506;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22838774_22843791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360412    GT:AD:DP:GQ:PL    1/1:1,78:79:99:2680,173,0
22    22842957    rs2236729    T    G    1981.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.38;SNPEFF_AMINO_ACID_CHANGE=E256A;SNPEFF_CODON_CHANGE=gAa/gCa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22838774_22843791;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360412    GT:AD:DP:GQ:PL    1/1:0,55:56:99:2014,153,0
22    22843118    rs2236730    C    T    3897.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4936;MQ=59.56;MQ0=0;QD=36.77;SNPEFF_AMINO_ACID_CHANGE=S202;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22838774_22843791;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360412    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3897,283,0
22    22868211    rs361558    G    A    316.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360412    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:349,27,0
22    22868493    rs361666    G    T    2517.70    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9138;MQ=59.67;MQ0=0;MQRankSum=-1.582;QD=35.97;ReadPosRankSum=-0.025;SNPEFF_AMINO_ACID_CHANGE=R488S;SNPEFF_CODON_CHANGE=Cgt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:1,69:70:99:2551,162,0
22    22868497    rs361762    G    C    2447.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.698;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=59.67;MQ0=0;MQRankSum=1.629;QD=35.47;ReadPosRankSum=-0.44;SNPEFF_AMINO_ACID_CHANGE=F486L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:1,67:69:99:2481,150,0
22    22868773    rs361737    G    A    2388    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=47.29;MQ0=1;QD=30.62;SNPEFF_AMINO_ACID_CHANGE=Y394;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,78:78:99:2421,193,0
22    22868776    rs362173    G    A    2328.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8907;MQ=47.71;MQ0=1;QD=30.24;SNPEFF_AMINO_ACID_CHANGE=P393;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2362,199,0
22    22869123    rs362003    T    C    2505.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.27;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=N278D;SNPEFF_CODON_CHANGE=Aac/Gac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2538,199,0
22    22869209    rs362124    C    G    2218.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.08;MQ0=0;QD=31.24;SNPEFF_AMINO_ACID_CHANGE=G249A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2251,178,0
22    22869218    rs362132    T    C    2309.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;QD=32.99;SNPEFF_AMINO_ACID_CHANGE=N246S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2343,178,0
22    22869538    rs361611    A    G    1888.28    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=31.47;SNPEFF_AMINO_ACID_CHANGE=D139;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1921,150,0
22    22869545    rs361580    T    G    1701.21    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.17;MQ0=0;QD=28.83;SNPEFF_AMINO_ACID_CHANGE=Y137S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1734,138,0
22    22869548    rs362011    T    C    1730.44    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.09;MQ0=0;QD=30.9;SNPEFF_AMINO_ACID_CHANGE=N136S;SNPEFF_CODON_CHANGE=aAt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1763,138,0
22    22869649    rs361721    G    C    1990.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9933;MQ=57.47;MQ0=0;QD=30.62;SNPEFF_AMINO_ACID_CHANGE=P102;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2023,162,0
22    22869742    rs361959    C    A    3194.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.438;DB;DP=93;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.59;QD=34.35;ReadPosRankSum=-1.047;SNPEFF_AMINO_ACID_CHANGE=K71N;SNPEFF_CODON_CHANGE=aaG/aaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22868060_22870025;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    1/1:1,92:93:99:3228,202,0
22    22870063    rs361856    C    T    262.86    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.165;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.625;QD=15.46;ReadPosRankSum=-1.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    0/1:8,9:17:99:293,0,231
22    22870147    rs362230    G    A    40.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.24;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302097    GT:AD:DP:GQ:PL    0/1:2,2:4:70.95:71,0,71
22    22891081    rs2072049    G    T    665.12    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.923;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.34;MQ0=0;MQRankSum=-0.703;QD=11.27;ReadPosRankSum=0.166;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAME;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403441    GT:AD:DP:GQ:PL    0/1:35,24:59:99:695,0,1222
22    22899234    rs2266988    A    G    1118.67    PASS    AB=0.618;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.633;DB;DP=123;Dels=0.0;FS=3.466;HRun=0;HaplotypeScore=0.9999;MQ=59.47;MQ0=0;MQRankSum=-0.357;QD=9.09;ReadPosRankSum=0.888;SNPEFF_AMINO_ACID_CHANGE=W7R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22899232_22899350;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRAME;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398741    GT:AD:DP:GQ:PL    0/1:76,47:123:99:1149,0,2415
22    22930770    rs6002909    A    G    1492.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV2-33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390302    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1525,117,0
22    22931376    rs5758878    C    T    178.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV2-33;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390302    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:212,18,0
22    22974940    rs57741889    T    C    68.28    MQFilter40;QDFilter2    AB=0.737;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.34;MQ0=19;MQRankSum=-1.577;QD=1.8;ReadPosRankSum=-0.197;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506079    GT:AD:DP:GQ:PL    0/1:28,10:38:98.28:98,0,432
22    22975121    .    C    T    36.60    MQFilter40    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.71;MQ0=7;MQRankSum=1.026;QD=3.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506079    GT:AD:DP:GQ:PL    0/1:7,4:11:54.83:67,0,55
22    22975975    .    A    G    130.82    PASS    AB=0.729;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.442;DP=48;Dels=0.0;FS=20.868;HRun=0;HaplotypeScore=0.0;MQ=49.21;MQ0=3;MQRankSum=-4.7;QD=2.73;ReadPosRankSum=-0.446;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000506079    GT:AD:DP:GQ:PL    0/1:35,13:48:99:161,0,1010
22    22977902    rs28535100    C    A    80.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.66;MQ0=2;QD=10.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402027    GT:AD:DP:GQ:PL    1/1:0,8:8:14.93:113,15,0
22    22985150    rs4050591    C    T    586.49    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=2.611;DB;DP=58;Dels=0.0;FS=1.172;HRun=0;HaplotypeScore=0.0;MQ=44.15;MQ0=5;MQRankSum=-0.924;QD=10.11;ReadPosRankSum=-0.063;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L1P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402027    GT:AD:DP:GQ:PL    0/1:33,25:58:99:616,0,866
22    22985303    rs6003123    C    G    886.75    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.05;DB;DP=48;Dels=0.0;FS=5.119;HRun=1;HaplotypeScore=0.0;MQ=23.9;MQ0=12;MQRankSum=-1.733;QD=18.47;ReadPosRankSum=1.04;SNPEFF_AMINO_ACID_CHANGE=S418;SNPEFF_CODON_CHANGE=tcG/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22985163_22986944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L1P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402027    GT:AD:DP:GQ:PL    1/1:1,47:48:51.92:920,52,0
22    22985653    .    A    G    136.09    MQFilter40;QDFilter2    AB=0.628;AC=1;AF=0.50;AN=2;BaseQRankSum=0.598;DP=172;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=18.98;MQ0=38;MQRankSum=-7.576;QD=0.79;ReadPosRankSum=2.235;SNPEFF_AMINO_ACID_CHANGE=L302;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22985163_22986944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POM121L1P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402027    GT:AD:DP:GQ:PL    0/1:108,64:172:99:166,0,1801
22    22988911    rs9612135    G    A    299.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.35;MQ0=5;QD=14.98;SNPEFF_AMINO_ACID_CHANGE=P32;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22988816_22988991;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GGTLC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000448514    GT:AD:DP:GQ:PL    1/1:0,20:20:33.05:333,33,0
22    22989076    rs62225861    A    G    155.17    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=20.48;MQ0=2;QD=11.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GGTLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448514    GT:AD:DP:GQ:PL    1/1:0,13:13:18.03:188,18,0
22    22989256    rs2904923    A    G    3822.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.58;MQ0=1;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=E70G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_22989224_22989351;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=GGTLC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000448514    GT:AD:DP:GQ:PL    1/1:0,120:120:99:3823,301,0
22    23006907    rs397725    A    G    479.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLV3-29;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520084    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:512,39,0
22    23007014    .    A    C    307.03    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=0.192;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9468;MQ=58.93;MQ0=0;MQRankSum=-0.137;QD=11.81;ReadPosRankSum=0.903;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D86994.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385099    GT:AD:DP:GQ:PL    0/1:14,11:26:99:337,0,428
22    23010943    rs406876    G    A    3571.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D86994.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385099    GT:AD:DP:GQ:PL    1/1:0,108:108:99:3571,274,0
22    23029263    rs443102    T    C    163.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.72;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390305    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
22    23029374    rs451369    G    A    1053    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.1;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390305    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1086,81,0
22    23029526    rs3205084    G    C    1194.27    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.102;DB;DP=92;Dels=0.0;FS=0.788;HRun=0;HaplotypeScore=2.4449;MQ=60.0;MQ0=0;MQRankSum=-0.024;QD=12.98;ReadPosRankSum=0.738;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390305    GT:AD:DP:GQ:PL    0/1:51,41:92:99:1224,0,1596
22    23029698    rs443756    T    C    2393.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9987;MQ=57.63;MQ0=2;QD=31.92;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390305    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2427,196,0
22    23029718    .    A    T    59.26    QDFilter2    AB=0.863;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.255;DP=73;Dels=0.0;FS=5.707;HRun=0;HaplotypeScore=0.0;MQ=56.93;MQ0=1;MQRankSum=-4.836;QD=0.81;ReadPosRankSum=-0.136;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-25;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390305    GT:AD:DP:GQ:PL    0/1:63,10:73:89.26:89,0,2154
22    23040362    rs5996349    A    G    75.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.51;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLV3-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517477    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,106
22    23040389    rs6003229    G    C    62.70    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=10;Dels=0.0;FS=2.43;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=6.27;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLV3-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517477    GT:AD:DP:GQ:PL    0/1:6,4:10:92.69:93,0,185
22    23040462    rs1312    T    C    344.73    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.092;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.14;MQ0=0;MQRankSum=1.016;QD=14.99;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLV3-24;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517477    GT:AD:DP:GQ:PL    0/1:11,12:23:99:375,0,372
22    23040767    rs5751516    G    T    2925.24    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.605;DB;DP=225;DS;Dels=0.0;FS=4.721;HRun=0;HaplotypeScore=8.2068;MQ=54.6;MQ0=3;MQRankSum=-2.526;QD=13.0;ReadPosRankSum=-0.087;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D86994.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385095    GT:AD:DP:GQ:PL    0/1:108,117:225:99:2955,0,3284
22    23055440    rs1008910    C    A    222.13    PASS    AB=0.655;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.216;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.312;QD=7.66;ReadPosRankSum=0.839;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390308    GT:AD:DP:GQ:PL    0/1:19,10:29:99:252,0,524
22    23055752    rs2304533    C    T    144.18    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.881;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6208;MQ=57.66;MQ0=0;MQRankSum=0.361;QD=14.42;ReadPosRankSum=0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-21;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390308    GT:AD:DP:GQ:PL    0/1:4,5:10:99:174,0,140
22    23063645    rs11090173    T    G    497.24    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.635;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.748;MQ=60.0;MQ0=0;MQRankSum=-0.775;QD=17.15;ReadPosRankSum=-1.616;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-19;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390309    GT:AD:DP:GQ:PL    0/1:12,17:29:99:527,0,423
22    23077555    rs4822296    T    C    1537.72    PASS    AB=0.449;AC=1;AF=0.50;AN=2;BaseQRankSum=0.903;DB;DP=118;Dels=0.0;FS=8.288;HRun=0;HaplotypeScore=4.1501;MQ=53.9;MQ0=0;MQRankSum=-3.996;QD=13.03;ReadPosRankSum=0.859;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV2-18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390310    GT:AD:DP:GQ:PL    0/1:53,65:118:99:1568,0,1655
22    23089996    rs2040566    T    C    216.88    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.119;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.6;MQ0=0;MQRankSum=0.265;QD=12.05;ReadPosRankSum=-0.088;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390311    GT:AD:DP:GQ:PL    0/1:9,9:18:99:247,0,313
22    23090423    rs34605189    G    C    139.71    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=0.126;DB;DP=37;Dels=0.0;FS=4.755;HRun=0;HaplotypeScore=0.0;MQ=50.77;MQ0=4;MQRankSum=-4.359;QD=3.78;ReadPosRankSum=-1.467;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390311    GT:AD:DP:GQ:PL    0/1:24,13:37:99:170,0,751
22    23090438    rs56223989    A    G    82.41    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.767;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=50.18;MQ0=4;MQRankSum=-3.633;QD=2.94;ReadPosRankSum=-1.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390311    GT:AD:DP:GQ:PL    0/1:18,10:28:99:112,0,643
22    23090539    rs2073915    C    T    104.19    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.22;MQ0=0;MQRankSum=0.736;QD=17.37;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390311    GT:AD:DP:GQ:PL    0/1:1,5:6:26.71:134,0,27
22    23101159    rs9620170    A    G    59.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.0;MQ0=0;MQRankSum=-1.537;QD=9.93;ReadPosRankSum=-0.988;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLV3-15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518356    GT:AD:DP:GQ:PL    0/1:3,3:6:89.57:90,0,105
22    23101247    rs4822303    G    A    41.12    QDFilter2    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.136;DB;DP=21;Dels=0.0;FS=2.128;HRun=0;HaplotypeScore=0.0;MQ=46.67;MQ0=0;MQRankSum=-3.223;QD=1.96;ReadPosRankSum=-3.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLV3-15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518356    GT:AD:DP:GQ:PL    0/1:13,8:21:71.11:71,0,442
22    23101248    rs4822304    C    T    41.90    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.253;DB;DP=21;Dels=0.0;FS=2.128;HRun=1;HaplotypeScore=0.0;MQ=46.67;MQ0=0;MQRankSum=-3.223;QD=2.0;ReadPosRankSum=-3.078;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_pseudogene;SNPEFF_GENE_NAME=IGLV3-15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000518356    GT:AD:DP:GQ:PL    0/1:13,8:21:71.90:72,0,436
22    23101280    rs1894244    C    T    329.77    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=0.179;DB;DP=31;Dels=0.0;FS=4.645;HRun=0;HaplotypeScore=0.0;MQ=46.57;MQ0=0;MQRankSum=-2.759;QD=10.64;ReadPosRankSum=0.933;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D87015.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385100    GT:AD:DP:GQ:PL    0/1:17,14:31:99:360,0,539
22    23101301    rs4822305    A    G    498.71    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.902;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.399;MQ=47.69;MQ0=1;MQRankSum=-1.789;QD=12.47;ReadPosRankSum=1.564;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D87015.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385100    GT:AD:DP:GQ:PL    0/1:18,22:40:99:529,0,607
22    23101347    rs1894245    G    A    809.29    MQFilter40    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=5.065;DB;DP=74;Dels=0.0;FS=1.716;HRun=0;HaplotypeScore=0.8321;MQ=36.14;MQ0=9;MQRankSum=-0.081;QD=10.94;ReadPosRankSum=-0.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D87015.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385100    GT:AD:DP:GQ:PL    0/1:36,38:74:99:839,0,818
22    23101559    rs4134484    G    T    3023.99    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.54;DB;DP=220;DS;Dels=0.0;FS=1.117;HRun=0;HaplotypeScore=0.9832;MQ=54.06;MQ0=3;MQRankSum=0.755;QD=13.75;ReadPosRankSum=-0.784;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D87015.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385100    GT:AD:DP:GQ:PL    0/1:114,105:220:99:3054,0,3378
22    23101705    .    G    A    1657.90    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.33;DP=101;Dels=0.0;FS=4.392;HRun=1;HaplotypeScore=1.3123;MQ=58.1;MQ0=0;MQRankSum=-0.097;QD=16.41;ReadPosRankSum=-0.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D87015.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385100    GT:AD:DP:GQ:PL    0/1:46,55:101:99:1688,0,1376
22    23114748    rs58165270    CTT    C    56.97    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.309;DB;DP=15;FS=0.0;HRun=15;HaplotypeScore=125.9034;IndelType=D;MQ=54.32;MQ0=0;MQRankSum=1.134;QD=3.8;ReadPosRankSum=0.831;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390313    GT:AD:DP:GQ:PL    0/1:7,7:15:96:96,0,224
22    23114938    rs2073450    C    A    431.83    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.482;DB;DP=44;Dels=0.0;FS=1.161;HRun=2;HaplotypeScore=0.9999;MQ=58.41;MQ0=0;MQRankSum=0.699;QD=9.81;ReadPosRankSum=3.013;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390313    GT:AD:DP:GQ:PL    0/1:27,17:44:99:462,0,795
22    23115001    rs2073452    A    G    393.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.307;DB;DP=35;Dels=0.0;FS=5.29;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.69;QD=11.24;ReadPosRankSum=-1.229;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390313    GT:AD:DP:GQ:PL    0/1:21,14:35:99:423,0,694
22    23135588    rs2016511    G    A    227.54    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.418;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.55;QD=10.34;ReadPosRankSum=0.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=D86998.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385098    GT:AD:DP:GQ:PL    0/1:12,10:22:99:258,0,421
22    23165242    rs76548351    A    AG    168.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=3;HaplotypeScore=9.6254;IndelType=I;MQ=60.0;MQ0=0;QD=33.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV3-9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390316    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
22    23165839    rs78776466    G    GC    1326.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=4;HaplotypeScore=74.5459;IndelType=I;MQ=57.98;MQ0=0;QD=34.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_V_gene;SNPEFF_GENE_NAME=IGLV2-8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390317    GT:AD:DP:GQ:PL    1/1:4,35:38:99:1368,102,0
22    23236211    rs28611253    G    A    128.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526893    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
22    23241620    rs462915    A    G    84.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=28.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526893    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
22    23241705    rs62218846    G    A    160.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.99;MQ0=2;QD=22.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526893    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:193,15,0
22    23241753    .    T    TA    629.55    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=0;HaplotypeScore=25.9647;IndelType=I;MQ=36.1;MQ0=2;QD=37.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526893    GT:AD:DP:GQ:PL    1/1:0,17:14:42.14:672,42,0
22    23241864    rs463830    G    A    482.19    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.17;MQ0=8;QD=18.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000526893    GT:AD:DP:GQ:PL    1/1:1,24:26:42.12:515,42,0
22    23247028    rs464478    A    G    401.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.66;MQ0=1;QD=30.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_gene;SNPEFF_GENE_NAME=IGLC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390323    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:435,33,0
22    23248758    rs1059142    G    A    972.02    MQFilter40    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=0.574;DB;DP=142;Dels=0.0;FS=3.731;HRun=2;HaplotypeScore=3.2678;MQ=23.5;MQ0=24;MQRankSum=0.136;QD=6.85;ReadPosRankSum=0.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_J_gene;SNPEFF_GENE_NAME=IGLJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390324    GT:AD:DP:GQ:PL    0/1:75,67:142:99:1002,0,1255
22    23248845    rs71815924    AC    A    286.31    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.061;DB;DP=33;FS=0.0;HRun=6;HaplotypeScore=98.3126;IndelType=D;MQ=15.43;MQ0=35;MQRankSum=0.3;QD=3.22;ReadPosRankSum=0.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_J_gene;SNPEFF_GENE_NAME=IGLJ3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390324    GT:AD:DP:GQ:PL    0/1:49,40:33:99:325,0,616
22    23256260    rs455941    T    G    137.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGLC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517690    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:170,15,0
22    23256464    rs463185    G    C    1149.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=28.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGLC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517690    GT:AD:DP:GQ:PL    1/1:0,40:40:96.28:1182,96,0
22    23261819    rs374015    G    A    1261.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=54.14;MQ0=0;QD=31.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGLC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519670    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1295,102,0
22    23262162    rs375081    C    A    165.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGLC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519670    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
22    23263602    rs373405    C    T    422.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGLC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410078    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:456,36,0
22    23264606    rs398264    G    A    130.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.79;MQ0=0;QD=32.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=IG_C_pseudogene;SNPEFF_GENE_NAME=IGLC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000410078    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
22    23478695    rs9612240    C    T    112.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216036    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
22    23478837    rs13054889    C    T    592.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216036    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:626,48,0
22    23479559    rs6519415    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216036    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
22    23482460    rs4822360    A    G    527.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.0;SNPEFF_AMINO_ACID_CHANGE=L10;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_23482409_23482487;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTDR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000452757    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:560,45,0
22    23482718    rs4822361    C    T    210.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216036    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
22    23482744    rs4822362    C    A    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RTDR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216036    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
22    23489042    rs5751591    G    A    91.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
22    23492236    rs9612248    C    T    79.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=19.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
22    23494833    rs5759603    T    G    185.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:218,18,0
22    23494904    rs2301555    T    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
22    23501286    rs2246716    T    G    564.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,16:16:45.13:598,45,0
22    23502835    rs5759609    T    G    39.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
22    23502987    rs9612252    A    G    513.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:547,42,0
22    23503008    rs9612253    T    C    449.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:483,36,0
22    23503170    rs5759612    A    G    852.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.58;SNPEFF_AMINO_ACID_CHANGE=N286D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_23503066_23503185;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341989    GT:AD:DP:GQ:PL    1/1:0,27:27:69.21:886,69,0
22    23503205    rs5759613    G    C    651.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,19:19:54.17:685,54,0
22    23503266    rs5759614    G    A    375.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:408,33,0
22    23503319    rs5759615    A    G    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
22    23503533    rs5759617    G    T    172.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
22    23503569    rs10775764    T    C    161    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
22    23503580    rs9608085    C    T    189.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:223,18,0
22    23503651    rs713682    C    T    362.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263116    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:396,30,0
22    23503756    rs737818    G    A    446.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341989    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:480,36,0
22    23503819    rs737819    T    C    112.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341989    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
22    23503870    rs737820    A    G    128.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAB36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341989    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
22    23540609    rs4822371    A    G    306.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290956    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:340,27,0
22    23627441    rs131675    T    C    258.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427791    GT:AD:DP:GQ:PL    1/1:0,11:11:24.05:291,24,0
22    23660942    rs2330350    T    C    38.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.62;MQ0=0;QD=12.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305877    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:70,6,0
22    23660980    rs13057338    G    A    33.40    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=30.81;MQ0=0;QD=16.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305877    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:65,6,0
22    23664869    rs143356473    GT    G    2023.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.0;HRun=2;HaplotypeScore=153.4919;IndelType=D;MQ=58.22;MQ0=0;QD=37.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305877    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2065,160,0
22    23701763    rs6003651    C    G    1163.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=36.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CES5AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400418    GT:AD:DP:GQ:PL    1/1:0,32:32:90.29:1197,90,0
22    23701804    rs6003652    T    C    1929.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=38.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CES5AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400418    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1963,147,0
22    23708474    rs9612335    C    A    1512.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CES5AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415114    GT:AD:DP:GQ:PL    1/1:0,42:42:99:1546,114,0
22    23712520    rs2073386    A    G    2514.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;QD=34.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CES5AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424029    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2547,187,0
22    23712647    rs5996529    A    C    3302.10    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.125;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5239;MQ=59.52;MQ0=0;MQRankSum=-1.589;QD=34.04;ReadPosRankSum=0.911;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CES5AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424029    GT:AD:DP:GQ:PL    1/1:1,96:97:99:3302,209,0
22    23719206    rs8138608    G    C    329.57    PASS    AB=0.267;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.546;DB;DP=15;Dels=0.0;FS=8.129;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.371;QD=21.97;ReadPosRankSum=0.588;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=CES5AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415114    GT:AD:DP:GQ:PL    0/1:4,11:15:99:360,0,120
22    23735649    rs8135826    C    A    40    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418264    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:71,6,0
22    23735751    rs8139944    T    C    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418264    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
22    23741810    rs13054049    A    G    35.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=8.86;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255890    GT:AD:DP:GQ:PL    1/1:1,3:4:6.01:67,6,0
22    23742018    rs13054421    A    G    97.10    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=2.808;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.729;QD=10.79;ReadPosRankSum=0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255890    GT:AD:DP:GQ:PL    0/1:5,4:9:99:127,0,179
22    23742105    rs2003752    G    A    103.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=15;Dels=0.0;FS=2.363;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=6.89;ReadPosRankSum=-0.796;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255890    GT:AD:DP:GQ:PL    0/1:10,5:15:99:133,0,248
22    23742308    rs13054327    C    A    444.15    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=0.233;DB;DP=31;Dels=0.0;FS=1.619;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.953;QD=14.33;ReadPosRankSum=-2.053;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ZDHHC8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255890    GT:AD:DP:GQ:PL    0/1:13,18:31:99:474,0,348
22    23779599    rs5996543    G    C    241.13    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.468;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.51;MQ0=1;MQRankSum=0.053;QD=14.18;ReadPosRankSum=1.523;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000344.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428415    GT:AD:DP:GQ:PL    0/1:9,8:17:99:271,0,240
22    23811647    rs5759830    A    G    258.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.089;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.548;QD=10.76;ReadPosRankSum=-0.953;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539460    GT:AD:DP:GQ:PL    0/1:12,12:24:99:288,0,396
22    23812127    rs12484815    C    T    286.08    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=28;Dels=0.0;FS=2.366;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.9;QD=10.22;ReadPosRankSum=0.591;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000539460    GT:AD:DP:GQ:PL    0/1:16,12:28:99:316,0,509
22    23812479    rs5996547    A    G    683.10    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=68;Dels=0.0;FS=0.99;HRun=0;HaplotypeScore=0.6651;MQ=57.0;MQ0=0;MQRankSum=0.044;QD=10.05;ReadPosRankSum=0.896;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:40,28:68:99:713,0,1219
22    23813258    rs6519442    T    G    2690.06    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=4.384;DB;DP=197;DS;Dels=0.0;FS=5.534;HRun=1;HaplotypeScore=4.9943;MQ=59.41;MQ0=0;MQRankSum=-0.317;QD=13.66;ReadPosRankSum=-0.602;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:105,92:197:99:2720,0,3203
22    23813308    rs6519443    G    C    2225.28    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.337;DB;DP=159;Dels=0.0;FS=3.198;HRun=0;HaplotypeScore=0.9469;MQ=59.56;MQ0=0;MQRankSum=-0.57;QD=14.0;ReadPosRankSum=-0.365;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:88,71:159:99:2255,0,2717
22    23813486    rs6003732    A    G    470.16    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=2.596;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.51;QD=17.41;ReadPosRankSum=-0.073;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:13,14:27:99:500,0,450
22    23815383    rs11090253    C    G    96    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.876;QD=10.67;ReadPosRankSum=-0.361;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:5,4:9:99:126,0,185
22    23815514    rs11090254    T    C    822.23    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.271;DB;DP=71;Dels=0.0;FS=1.203;HRun=1;HaplotypeScore=0.0;MQ=59.35;MQ0=0;MQRankSum=1.529;QD=11.58;ReadPosRankSum=-0.224;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:37,34:71:99:852,0,1221
22    23815573    rs12169718    G    A    1236.90    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.09;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.31;MQ0=0;MQRankSum=-0.066;QD=13.16;ReadPosRankSum=1.809;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:48,45:94:99:1267,0,1501
22    23815591    rs74432260    C    T    1336.05    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=4.613;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.3;MQ0=0;MQRankSum=0.72;QD=14.37;ReadPosRankSum=0.84;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:50,43:93:99:1366,0,1175
22    23815731    rs12169802    G    A    181.94    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=1.036;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.19;MQ0=0;MQRankSum=0.033;QD=7.91;ReadPosRankSum=1.303;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:16,7:23:99:212,0,601
22    23815760    rs5759832    T    C    369.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.93;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:402,30,0
22    23816145    rs4822415    C    T    644.26    PASS    AB=0.585;AC=1;AF=0.50;AN=2;BaseQRankSum=4.679;DB;DP=53;Dels=0.0;FS=6.676;HRun=0;HaplotypeScore=0.0;MQ=59.72;MQ0=0;MQRankSum=-0.545;QD=12.16;ReadPosRankSum=1.024;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:31,22:53:99:674,0,856
22    23824946    rs117139363    G    A    118.12    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.563;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.281;QD=6.56;ReadPosRankSum=-2.366;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:13,5:18:99:148,0,463
22    23825183    rs140153    T    C    2084.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.69;MQ0=0;QD=35.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    1/1:0,59:59:99:2117,159,0
22    23825256    rs113961307    A    G    1307.62    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.39;DB;DP=123;Dels=0.0;FS=2.538;HRun=0;HaplotypeScore=3.3892;MQ=57.31;MQ0=0;MQRankSum=-0.492;QD=10.63;ReadPosRankSum=-0.961;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=AP000345.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320372    GT:AD:DP:GQ:PL    0/1:64,59:123:99:1338,0,1948
22    23915340    rs1064417    T    G    252.99    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.382;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.377;QD=23.0;ReadPosRankSum=1.531;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438703    GT:AD:DP:GQ:PL    0/1:3,8:11:91:283,0,91
22    23961574    .    C    T    444.70    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.629;DP=36;Dels=0.0;FS=2.846;HRun=0;HaplotypeScore=0.8667;MQ=57.39;MQ0=0;MQRankSum=2.673;QD=12.35;ReadPosRankSum=-0.838;SNPEFF_AMINO_ACID_CHANGE=C138Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_23961551_23961580;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf43;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317749    GT:AD:DP:GQ:PL    0/1:18,18:36:99:475,0,635
22    24037456    rs151313643    C    T    41.31    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=8.26;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RGL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290691    GT:AD:DP:GQ:PL    0/1:2,3:5:71.30:71,0,71
22    24056339    rs915588    C    G    447.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUSBP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437294    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:480,36,0
22    24056537    rs2070444    G    A    484.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=32.29;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GUSBP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421064    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:517,39,0
22    24106674    rs140181    G    A    1093.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=28.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C22orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498542    GT:AD:DP:GQ:PL    1/1:0,39:39:84.27:1127,84,0
22    24108288    rs140182    C    G    422.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C22orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305199    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:456,39,0
22    24108412    rs80027270    G    A    257.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.73;SNPEFF_AMINO_ACID_CHANGE=T31M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24108315_24108462;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHCHD10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000520222    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:290,21,0
22    24109462    rs131443    T    C    167.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C22orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305199    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
22    24109550    rs131444    T    C    285.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5767;MQ=55.69;MQ0=0;QD=28.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=C22orf15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305199    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:318,24,0
22    24121378    rs738792    C    T    199.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.17;SNPEFF_AMINO_ACID_CHANGE=A38V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24121374_24121603;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MMP11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215743    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:232,18,0
22    24122499    rs9612427    G    A    247.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=24.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MMP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465730    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:280,21,0
22    24125565    rs2877173    G    A    591.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MMP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428253    GT:AD:DP:GQ:PL    1/1:0,22:22:45.15:624,45,0
22    24129553    rs58907217    GGC    G    140.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=37.9306;IndelType=D;MQ=62.36;MQ0=0;QD=15.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=MMP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215743    GT:AD:DP:GQ:PL    1/1:4,5:9:15.05:183,15,0
22    24135968    rs67450630    C    CT    140.59    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=28;FS=0.0;HRun=17;HaplotypeScore=240.4529;IndelType=I;MQ=52.76;MQ0=0;MQRankSum=0.597;QD=5.02;ReadPosRankSum=-0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263121    GT:AD:DP:GQ:PL    0/1:16,10:28:36.01:180,0,36
22    24145395    rs5760030    A    G    1987.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=59.19;MQ0=0;QD=34.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491967    GT:AD:DP:GQ:PL    1/1:0,57:57:99:2021,156,0
22    24145675    rs5751738    G    C    322.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417137    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:355,27,0
22    24145727    rs5760032    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417137    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
22    24158697    rs2070456    G    C    132.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263121    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
22    24158709    rs2073392    A    G    148.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263121    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:181,15,0
22    24176959    rs71677115    CA    C    420.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=2;HaplotypeScore=30.3944;IndelType=D;MQ=61.78;MQ0=0;QD=35.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DERL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318109    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:462,36,0
22    24179724    rs2070462    G    C    36.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263121    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
22    24180123    rs67959239    TC    T    243.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=19.77;IndelType=D;MQ=61.34;MQ0=0;QD=30.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMARCB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263121    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:285,24,0
22    24204158    rs2275979    A    G    548.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316185    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:581,48,0
22    24225269    rs9608214    A    C    40.01    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=10.0;ReadPosRankSum=0.736;SNPEFF_AMINO_ACID_CHANGE=E348D;SNPEFF_CODON_CHANGE=gaA/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24224946_24225329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398363    GT:AD:DP:GQ:PL    0/1:2,2:4:31.62:70,0,32
22    24226242    rs2070460    A    G    862.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=34.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC2A11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398363    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:895,66,0
22    24237463    rs2070767    T    C    90.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.06;SNPEFF_AMINO_ACID_CHANGE=I114M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24236613_24237719;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP000350.4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406213    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
22    24325006    .    G    A    160.71    MQFilter40    AC=2;AF=1.00;AN=2;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=12.4;MQ0=18;QD=5.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215780    GT:AD:DP:GQ:PL    1/1:0,27:27:21.02:194,21,0
22    24325024    .    C    T    160.71    MQFilter40    AC=2;AF=1.00;AN=2;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.01;MQ0=12;QD=8.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215780    GT:AD:DP:GQ:PL    1/1:0,20:20:21.02:194,21,0
22    24325047    rs149686121    C    G    160.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=14.34;MQ0=11;QD=8.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTT2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215780    GT:AD:DP:GQ:PL    1/1:0,18:18:21.02:194,21,0
22    24340650    rs72348255    GT    G    155.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=13;FS=0.0;HRun=13;HaplotypeScore=42.326;IndelType=D;MQ=52.42;MQ0=0;MQRankSum=0.29;QD=11.1;ReadPosRankSum=-0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GSTTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448934    GT:AD:DP:GQ:PL    1/1:1,12:13:5.66:196,6,0
22    24340938    rs140290    A    G    1137.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.63;MQ0=0;QD=31.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=GSTTP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000448934    GT:AD:DP:GQ:PL    1/1:0,36:36:90.26:1170,90,0
22    24345691    rs140302    A    C    637.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.28;MQ0=2;QD=27.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=Mt_tRNA_pseudogene;SNPEFF_GENE_NAME=AP000351.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493308    GT:AD:DP:GQ:PL    1/1:0,23:23:54.16:671,54,0
22    24347288    rs140305    G    A    206.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=Mt_tRNA_pseudogene;SNPEFF_GENE_NAME=AP000351.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493308    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:240,18,0
22    24376322    rs4630    G    A    125.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417870    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
22    24377034    rs140308    A    G    795.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.04;FS=0.0;HRun=2;HaplotypeScore=2.7273;MQ=58.2;MQ0=0;QD=30.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428175    GT:AD:DP:GQ:PL    1/1:0,25:25:63.20:829,63,0
22    24383954    rs140313    C    T    1840.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GSTT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248935    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1873,141,0
22    24396351    rs387046    T    C    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=15.69;MQ0=4;QD=4.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=transcribed_unprocessed_pseudogene;SNPEFF_GENE_NAME=GSTTP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000389399    GT:AD:DP:GQ:PL    1/1:0,8:8:6.02:67,6,0
22    24401542    rs5751792    G    A    71.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=17.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=AP000351.13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440539    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:104,9,0
22    24452885    rs2070467    A    G    1476.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;QD=37.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445422    GT:AD:DP:GQ:PL    1/1:1,38:39:99:1509,114,0
22    24459438    rs77495199    T    C    3065.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=32.61;SNPEFF_AMINO_ACID_CHANGE=C521;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24459422_24459609;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABIN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405822    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3098,232,0
22    24468184    rs3835312    G    GC    198.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=19.2382;IndelType=I;MQ=55.21;MQ0=0;QD=39.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484593    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:240,15,0
22    24472270    rs2283807    A    G    927.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263119    GT:AD:DP:GQ:PL    1/1:1,29:30:72.24:961,72,0
22    24480503    rs4820581    G    A    2343.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263119    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2376,178,0
22    24492061    rs2236622    T    C    2434.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.88;MQ0=0;QD=30.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000496016    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2467,184,0
22    24578995    rs62231980    G    A    85.31    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=2.361;DB;DP=20;Dels=0.0;FS=2.933;HRun=0;HaplotypeScore=0.0;MQ=48.15;MQ0=0;MQRankSum=-3.287;QD=4.27;ReadPosRankSum=-0.046;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CABIN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263119    GT:AD:DP:GQ:PL    0/1:14,6:20:99:115,0,306
22    24579049    rs62231981    G    A    275.74    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=2.816;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=2;MQRankSum=-3.738;QD=6.57;ReadPosRankSum=-0.048;SNPEFF_AMINO_ACID_CHANGE=R34H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24579025_24579235;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358321    GT:AD:DP:GQ:PL    0/1:26,16:42:99:306,0,664
22    24583138    rs17642338    G    A    367.83    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.969;DB;DP=32;Dels=0.0;FS=5.387;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.247;QD=11.49;ReadPosRankSum=0.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUSD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358321    GT:AD:DP:GQ:PL    0/1:18,14:32:99:398,0,452
22    24621491    rs12627971    C    T    160.60    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.523;DB;DP=17;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.473;QD=9.45;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263112    GT:AD:DP:GQ:PL    0/1:9,8:17:99:191,0,250
22    24622648    rs2275984    T    C    585.74    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.157;DB;DP=42;Dels=0.0;FS=4.506;HRun=4;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=1.503;QD=13.95;ReadPosRankSum=-0.379;SNPEFF_AMINO_ACID_CHANGE=K245R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24622599_24622735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000438024    GT:AD:DP:GQ:PL    0/1:20,22:42:99:616,0,650
22    24656646    rs145152418    G    A    525.63    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.812;DB;DP=38;Dels=0.0;FS=2.741;HRun=0;HaplotypeScore=7.4657;MQ=47.04;MQ0=1;MQRankSum=2.117;QD=13.83;ReadPosRankSum=-0.366;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444246    GT:AD:DP:GQ:PL    0/1:18,20:38:99:556,0,336
22    24656656    rs4049981    A    G    83.49    QDFilter2    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=1.745;DB;DP=42;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=10.9415;MQ=46.75;MQ0=0;MQRankSum=-4.72;QD=1.99;ReadPosRankSum=-1.144;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444246    GT:AD:DP:GQ:PL    0/1:31,11:42:99:113,0,948
22    24656692    rs62232035    A    G    89.13    QDFilter2    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=1.86;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=48.61;MQ0=0;MQRankSum=-5.241;QD=1.68;ReadPosRankSum=1.796;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444246    GT:AD:DP:GQ:PL    0/1:40,13:53:99:119,0,1136
22    24656710    rs62232036    A    G    181.26    PASS    AB=0.682;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.443;DB;DP=66;Dels=0.0;FS=7.787;HRun=1;HaplotypeScore=0.0;MQ=46.41;MQ0=4;MQRankSum=-5.671;QD=2.75;ReadPosRankSum=-0.461;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444246    GT:AD:DP:GQ:PL    0/1:45,21:66:99:211,0,1351
22    24656854    rs4049985    T    C    759.64    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.807;DB;DP=86;Dels=0.0;FS=3.415;HRun=1;HaplotypeScore=0.0;MQ=46.47;MQ0=7;MQRankSum=-5.698;QD=8.83;ReadPosRankSum=2.035;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444246    GT:AD:DP:GQ:PL    0/1:45,41:86:99:790,0,1342
22    24656967    rs62232037    C    G    274.57    MQFilter40    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.248;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=27.17;MQ0=9;MQRankSum=-1.458;QD=5.38;ReadPosRankSum=0.696;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444246    GT:AD:DP:GQ:PL    0/1:29,22:51:99:305,0,534
22    24657019    .    C    T    128.62    MQFilter40    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.796;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=21.83;MQ0=8;MQRankSum=-0.669;QD=4.44;ReadPosRankSum=-0.739;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444246    GT:AD:DP:GQ:PL    0/1:16,13:29:99:159,0,228
22    24659591    .    A    G    68.07    QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.716;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6132;MQ=48.41;MQ0=0;MQRankSum=-3.922;QD=0.91;ReadPosRankSum=-2.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POM121L9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419222    GT:AD:DP:GQ:PL    0/1:62,12:75:98.06:98,0,2022
22    24659593    .    C    T    100.72    QDFilter2    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.711;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8245;MQ=48.47;MQ0=0;MQRankSum=-3.942;QD=1.29;ReadPosRankSum=-2.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POM121L9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419222    GT:AD:DP:GQ:PL    0/1:65,13:78:99:131,0,1989
22    24659621    .    T    C    312.04    PASS    AB=0.732;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.093;DP=82;Dels=0.0;FS=7.927;HRun=1;HaplotypeScore=1.5449;MQ=49.4;MQ0=0;MQRankSum=-4.631;QD=3.81;ReadPosRankSum=-0.403;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POM121L9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419222    GT:AD:DP:GQ:PL    0/1:60,22:82:99:342,0,1814
22    24659623    .    C    T    323.14    PASS    AB=0.723;AC=1;AF=0.50;AN=2;BaseQRankSum=2.56;DP=83;Dels=0.0;FS=5.564;HRun=0;HaplotypeScore=1.5449;MQ=49.47;MQ0=0;MQRankSum=-4.139;QD=3.89;ReadPosRankSum=-0.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POM121L9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419222    GT:AD:DP:GQ:PL    0/1:60,23:83:99:353,0,1700
22    24659644    rs28539511    T    C    414.33    PASS    AB=0.728;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.046;DB;DP=81;Dels=0.0;FS=5.938;HRun=0;HaplotypeScore=0.6651;MQ=49.95;MQ0=0;MQRankSum=-4.697;QD=5.12;ReadPosRankSum=3.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=POM121L9P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419222    GT:AD:DP:GQ:PL    0/1:59,22:81:99:444,0,1718
22    24717850    rs204710    A    G    3704.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_AMINO_ACID_CHANGE=D301G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24717256_24718886;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314328    GT:AD:DP:GQ:PL    1/1:0,102:102:99:3704,274,0
22    24734198    .    A    G    359.81    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.0;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.713;QD=15.64;ReadPosRankSum=0.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314328    GT:AD:DP:GQ:PL    0/1:10,13:23:99:390,0,342
22    24761467    rs204718    G    A    1845.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.64;MQ0=0;QD=33.56;SNPEFF_AMINO_ACID_CHANGE=V951M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24761444_24761600;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPECC1L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000314328    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1879,144,0
22    24917852    rs2232868    G    A    118.93    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326010    GT:AD:DP:GQ:PL    0/1:2,4:6:52.07:149,0,52
22    24921558    rs5996713    C    T    141.99    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.466;QD=12.91;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486043    GT:AD:DP:GQ:PL    0/1:6,5:11:99:172,0,214
22    24936970    rs9704    A    G    995.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402766    GT:AD:DP:GQ:PL    1/1:0,33:33:78.25:1028,78,0
22    24938908    rs8139822    A    G    634.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407973    GT:AD:DP:GQ:PL    1/1:0,22:22:57.15:668,57,0
22    24939110    .    A    G    319.46    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DP=19;Dels=0.0;FS=7.375;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.939;QD=16.81;ReadPosRankSum=1.102;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407973    GT:AD:DP:GQ:PL    0/1:9,10:19:99:349,0,265
22    24940242    rs2012772    G    T    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407973    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
22    24944053    rs4822506    C    T    849.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402766    GT:AD:DP:GQ:PL    1/1:0,25:25:66.20:882,66,0
22    24951086    rs11704895    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_24950917_24951104;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407973    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
22    24953479    rs11455931    C    CT    162.07    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=9;FS=0.0;HRun=12;HaplotypeScore=61.4337;IndelType=I;MQ=54.65;MQ0=0;MQRankSum=0.751;QD=18.01;ReadPosRankSum=0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215829    GT:AD:DP:GQ:PL    1/1:1,8:9:5.09:202,5,0
22    24953571    rs5760472    A    G    506.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=26.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215829    GT:AD:DP:GQ:PL    1/1:0,19:19:45.11:539,45,0
22    24964128    rs4597    T    C    2390.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=32.75;SNPEFF_AMINO_ACID_CHANGE=A101;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_24963952_24964144;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SNRPD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215829    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2424,178,0
22    24982522    rs9612662    A    T    63.03    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-2.148;QD=6.3;ReadPosRankSum=0.336;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464490    GT:AD:DP:GQ:PL    0/1:5,5:10:93.02:93,0,176
22    25016737    rs5760505    A    G    79.51    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.876;DB;DP=9;Dels=0.0;FS=8.451;HRun=1;HaplotypeScore=1.9157;MQ=47.74;MQ0=0;MQRankSum=-0.361;QD=8.83;ReadPosRankSum=1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419133    GT:AD:DP:GQ:PL    0/1:4,5:9:99:110,0,136
22    25019155    rs4049829    T    C    109.66    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.866;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.61;MQ0=0;MQRankSum=-4.0;QD=4.57;ReadPosRankSum=-0.031;SNPEFF_AMINO_ACID_CHANGE=V272A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_25019074_25019223;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248923    GT:AD:DP:GQ:PL    0/1:15,9:24:99:140,0,447
22    25023492    rs71318991    G    A    591.13    MQFilter40    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=0.906;DB;DP=52;Dels=0.0;FS=2.561;HRun=1;HaplotypeScore=1.2434;MQ=39.87;MQ0=4;MQRankSum=-0.309;QD=11.37;ReadPosRankSum=-0.65;SNPEFF_AMINO_ACID_CHANGE=E28K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_25023377_25023586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000401885    GT:AD:DP:GQ:PL    0/1:23,28:52:99:621,0,513
22    25024886    rs149933133    G    A    350.23    MQFilter40    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=0.383;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9933;MQ=28.79;MQ0=0;MQRankSum=0.547;QD=8.76;ReadPosRankSum=0.301;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404920    GT:AD:DP:GQ:PL    0/1:23,17:40:99:380,0,536
22    25043061    .    T    TCCGG    342.92    PASS    AB=0.87;AC=1;AF=0.50;AN=2;BaseQRankSum=4.104;DP=47;FS=3.569;HRun=0;HaplotypeScore=216.5078;IndelType=I;MQ=46.04;MQ0=0;MQRankSum=-1.202;QD=7.3;ReadPosRankSum=-1.763;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382243    GT:AD:DP:GQ:PL    0/1:40,5:47:99:382,0,1813
22    25043098    .    G    C    180.11    MQFilter40    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=0.014;DP=60;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=35.08;MQ0=16;MQRankSum=-0.77;QD=3.0;ReadPosRankSum=1.022;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382243    GT:AD:DP:GQ:PL    0/1:48,12:60:99:210,0,1029
22    25044108    .    G    A    37.47    MQFilter40;QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.124;DP=44;Dels=0.0;FS=5.563;HRun=0;HaplotypeScore=2.2337;MQ=24.36;MQ0=22;MQRankSum=-1.115;QD=0.85;ReadPosRankSum=-1.032;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447261    GT:AD:DP:GQ:PL    0/1:33,11:44:67.46:67,0,446
22    25045737    rs62231251    C    T    109.11    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.271;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=25.8;MQ0=4;MQRankSum=-0.978;QD=6.06;ReadPosRankSum=-1.991;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447261    GT:AD:DP:GQ:PL    0/1:8,10:18:99:139,0,140
22    25045855    rs738818    G    A    557.93    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.996;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.47;MQ0=1;MQRankSum=-1.456;QD=14.68;ReadPosRankSum=2.315;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447261    GT:AD:DP:GQ:PL    0/1:16,22:38:99:588,0,491
22    25047794    .    A    G    323.90    MQFilter40    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=3.213;DP=72;Dels=0.0;FS=12.43;HRun=0;HaplotypeScore=1.7882;MQ=18.36;MQ0=7;MQRankSum=-5.457;QD=4.5;ReadPosRankSum=-1.379;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382243    GT:AD:DP:GQ:PL    0/1:41,31:72:99:354,0,692
22    25047870    .    A    G    34.18    MQFilter40;QDFilter2    AB=0.859;AC=1;AF=0.50;AN=2;BaseQRankSum=1.018;DP=136;Dels=0.0;FS=8.846;HRun=2;HaplotypeScore=1.7998;MQ=13.48;MQ0=57;MQRankSum=-1.117;QD=0.25;ReadPosRankSum=-1.187;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=BCRP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382243    GT:AD:DP:GQ:PL    0/1:116,19:136:64.17:64,0,940
22    25053775    rs4822528    T    C    1239.40    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DB;DP=108;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.09;MQ0=3;MQRankSum=1.104;QD=11.48;ReadPosRankSum=0.465;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=POM121L10P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436994    GT:AD:DP:GQ:PL    0/1:56,52:108:99:1269,0,1302
22    25124095    rs738827    C    T    1843.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332271    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1876,141,0
22    25129964    rs5760612    A    G    780.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332271    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:813,60,0
22    25145094    rs5760620    C    T    357.36    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=3.552;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=57.2;MQ0=0;MQRankSum=0.855;QD=11.17;ReadPosRankSum=-1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332271    GT:AD:DP:GQ:PL    0/1:18,14:32:99:387,0,533
22    25145453    rs1892723    C    T    1710.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=35.63;SNPEFF_AMINO_ACID_CHANGE=V309M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_25145371_25145488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527701    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1743,129,0
22    25145471    rs1892722    A    G    564.99    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.268;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.412;QD=15.27;ReadPosRankSum=-1.077;SNPEFF_AMINO_ACID_CHANGE=C303R;SNPEFF_CODON_CHANGE=Tgt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_25145371_25145488;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000527701    GT:AD:DP:GQ:PL    0/1:17,20:37:99:595,0,564
22    25151638    rs6004259    T    C    341.03    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.439;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=59.2;MQ0=0;MQRankSum=0.317;QD=11.76;ReadPosRankSum=0.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332271    GT:AD:DP:GQ:PL    0/1:15,13:28:99:371,0,497
22    25151890    rs143403523    C    CA    1820.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-7.573;DB;DP=129;FS=0.844;HRun=10;HaplotypeScore=619.1136;IndelType=I;MQ=58.0;MQ0=0;MQRankSum=-0.478;QD=14.11;ReadPosRankSum=-0.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332271    GT:AD:DP:GQ:PL    1/1:69,56:129:52.97:1862,53,0
22    25153810    rs71849129    GA    G    406.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.037;DB;DP=55;FS=0.0;HRun=17;HaplotypeScore=476.1552;IndelType=D;MQ=50.73;MQ0=1;MQRankSum=-1.069;QD=7.25;ReadPosRankSum=0.405;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332271    GT:AD:DP:GQ:PL    1/1:11,17:55:98.91:448,99,0
22    25156134    rs9612756    A    C    33.42    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.68;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332271    GT:AD:DP:GQ:PL    0/1:2,3:5:55.38:63,0,55
22    25158326    rs5751975    A    G    259.44    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.183;DB;DP=31;Dels=0.0;FS=7.343;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.42;QD=8.37;ReadPosRankSum=0.701;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIWIL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332271    GT:AD:DP:GQ:PL    0/1:18,13:31:99:289,0,584
22    25282765    rs139719    T    C    939.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=59.32;MQ0=0;QD=27.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400358    GT:AD:DP:GQ:PL    1/1:0,34:34:84.19:973,84,0
22    25291182    rs67351542    TTTC    T    418.21    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=4.07;DB;DP=25;FS=1.77;HRun=0;HaplotypeScore=100.4834;IndelType=D;MQ=57.17;MQ0=0;MQRankSum=-1.083;QD=16.73;ReadPosRankSum=-0.263;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400358    GT:AD:DP:GQ:PL    0/1:15,10:25:99:457,0,922
22    25315642    rs5760731    C    T    143.37    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=1.71;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.307;QD=7.55;ReadPosRankSum=0.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400358    GT:AD:DP:GQ:PL    0/1:13,6:19:99:173,0,456
22    25315660    rs5760732    T    C    196.70    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.042;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.465;QD=9.84;ReadPosRankSum=1.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400358    GT:AD:DP:GQ:PL    0/1:13,7:20:99:227,0,437
22    25315753    rs5752018    G    A    1051.54    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=3.932;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7753;MQ=59.28;MQ0=0;MQRankSum=0.445;QD=16.43;ReadPosRankSum=0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400358    GT:AD:DP:GQ:PL    0/1:26,38:64:99:1082,0,645
22    25320371    rs5760738    C    T    184.05    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.597;QD=16.73;ReadPosRankSum=-0.278;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473458    GT:AD:DP:GQ:PL    0/1:4,7:11:99:214,0,101
22    25334037    rs34070080    C    CTCATTCAT    909.41    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.614;DB;DP=25;FS=2.696;HRun=0;HaplotypeScore=146.949;IndelType=I;MQ=51.06;MQ0=0;MQRankSum=-3.307;QD=36.38;ReadPosRankSum=-1.291;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMEM211;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382744    GT:AD:DP:GQ:PL    0/1:18,6:25:99:948,0,995
22    25570020    rs6004459    G    A    30.18    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9967;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=4.31;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1671;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358431    GT:AD:DP:GQ:PL    0/1:5,2:7:60.17:60,0,172
22    25573431    rs12168578    G    A    655.58    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.654;DB;DP=36;Dels=0.0;FS=3.22;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.393;QD=18.21;ReadPosRankSum=1.46;SNPEFF_AMINO_ACID_CHANGE=E1672;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_25573315_25573489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1671;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358431    GT:AD:DP:GQ:PL    0/1:12,24:36:99:686,0,359
22    25573514    rs1009989    C    T    382.70    PASS    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=14;Dels=0.0;FS=7.549;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.156;QD=27.34;ReadPosRankSum=1.557;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1671;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358431    GT:AD:DP:GQ:PL    0/1:3,11:14:48.29:413,0,48
22    25574507    rs62231225    C    G    163.54    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.471;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.43;MQ0=0;MQRankSum=-1.892;QD=11.68;ReadPosRankSum=0.225;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1671;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358431    GT:AD:DP:GQ:PL    0/1:6,8:14:99:194,0,161
22    25577930    rs5996848    A    G    112.89    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.937;QD=16.13;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1671;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358431    GT:AD:DP:GQ:PL    0/1:3,4:7:97.27:143,0,97
22    25597331    rs2269672    T    C    657.54    PASS    AB=0.491;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.756;DB;DP=55;Dels=0.0;FS=1.218;HRun=1;HaplotypeScore=0.9993;MQ=59.66;MQ0=0;MQRankSum=-1.61;QD=11.96;ReadPosRankSum=2.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1671;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358431    GT:AD:DP:GQ:PL    0/1:27,28:55:99:688,0,818
22    25601196    rs9608378    C    G    711.95    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=1.21;DB;DP=49;Dels=0.0;FS=1.142;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.51;QD=14.53;ReadPosRankSum=-0.27;SNPEFF_AMINO_ACID_CHANGE=H113D;SNPEFF_CODON_CHANGE=Cat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_25601187_25601329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215855    GT:AD:DP:GQ:PL    0/1:25,24:49:99:742,0,675
22    25602784    rs2252880    A    G    40.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215855    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
22    25621123    rs9306412    C    A    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398215    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:163,12,0
22    25624049    rs5760923    G    A    109.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=18.31;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398215    GT:AD:DP:GQ:PL    0/1:2,4:6:40.14:140,0,40
22    25625554    rs55700037    G    A    523.40    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.074;DB;DP=40;Dels=0.0;FS=1.697;HRun=0;HaplotypeScore=0.9992;MQ=48.14;MQ0=0;MQRankSum=0.177;QD=13.08;ReadPosRankSum=-0.639;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398215    GT:AD:DP:GQ:PL    0/1:22,18:40:99:553,0,709
22    25625579    rs138678957    C    T    289.65    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.024;DB;DP=27;Dels=0.0;FS=2.366;HRun=0;HaplotypeScore=0.5784;MQ=50.06;MQ0=0;MQRankSum=-1.342;QD=10.73;ReadPosRankSum=-0.561;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398215    GT:AD:DP:GQ:PL    0/1:15,12:27:99:320,0,465
22    25713933    rs133156    A    G    58.13    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.517;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=30.82;MQ0=1;MQRankSum=-1.221;QD=6.46;ReadPosRankSum=0.322;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=IGLL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412472    GT:AD:DP:GQ:PL    0/1:4,5:9:88.13:88,0,100
22    25714218    rs2072869    A    T    944.27    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=3.697;DB;DP=61;Dels=0.0;FS=2.303;HRun=0;HaplotypeScore=0.9159;MQ=57.02;MQ0=0;MQRankSum=-0.333;QD=15.48;ReadPosRankSum=-1.0;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=IGLL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412472    GT:AD:DP:GQ:PL    0/1:28,33:61:99:974,0,810
22    25715630    rs140172    A    G    77.95    MQFilter40    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=28.03;MQ0=1;MQRankSum=-0.72;QD=11.14;ReadPosRankSum=0.0;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=IGLL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412472    GT:AD:DP:GQ:PL    0/1:2,5:7:54.71:108,0,55
22    25716068    rs133162    C    G    950.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=IGLL3P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412472    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:984,75,0
22    25750814    rs144854931    C    CAGGGCA    424.35    PASS    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.702;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=118.128;IndelType=I;MQ=54.77;MQ0=0;MQRankSum=-3.344;QD=18.45;ReadPosRankSum=0.454;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402785    GT:AD:DP:GQ:PL    0/1:18,5:23:99:463,0,1042
22    25750873    rs133189    G    A    48.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.03;MQ0=0;MQRankSum=-1.3;QD=6.98;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRP5L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402785    GT:AD:DP:GQ:PL    0/1:4,3:7:78.83:79,0,140
22    25753231    rs133194    G    A    214    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.755;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.39;MQ0=0;MQRankSum=-1.401;QD=7.93;ReadPosRankSum=0.431;SNPEFF_AMINO_ACID_CHANGE=D143;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_25753222_25753393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LRP5L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402785    GT:AD:DP:GQ:PL    0/1:17,10:27:99:244,0,490
22    26157068    rs61734946    C    G    1122.63    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.174;DB;DP=77;Dels=0.0;FS=1.923;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=1.247;QD=14.58;ReadPosRankSum=-0.852;SNPEFF_AMINO_ACID_CHANGE=I3M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26156951_26157098;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:38,39:77:99:1153,0,1111
22    26157144    rs17623980    A    G    641.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.995;DB;DP=51;Dels=0.0;FS=3.337;HRun=1;HaplotypeScore=0.7887;MQ=58.63;MQ0=0;MQRankSum=0.416;QD=12.58;ReadPosRankSum=-0.544;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:25,25:51:99:672,0,738
22    26159129    rs112518963    C    CTT    1392.32    PASS    AB=0.678;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.352;DB;DP=61;FS=7.502;HRun=3;HaplotypeScore=209.2973;IndelType=I;MQ=59.76;MQ0=0;MQRankSum=0.936;QD=22.82;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:32,29:61:99:1431,0,901
22    26159289    rs133885    G    A    390.23    PASS    AB=0.627;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.14;DB;DP=51;Dels=0.0;FS=5.93;HRun=0;HaplotypeScore=0.9332;MQ=58.81;MQ0=0;MQRankSum=0.847;QD=7.65;ReadPosRankSum=-0.828;SNPEFF_AMINO_ACID_CHANGE=G44E;SNPEFF_CODON_CHANGE=gGg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26159198_26159356;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:32,19:51:99:420,0,1038
22    26163996    rs133901    T    C    1465.34    PASS    AB=0.505;AC=1;AF=0.50;AN=2;BaseQRankSum=2.619;DB;DP=91;Dels=0.0;FS=2.13;HRun=0;HaplotypeScore=0.0;MQ=59.49;MQ0=0;MQRankSum=-0.448;QD=16.1;ReadPosRankSum=-0.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:46,45:91:99:1495,0,1567
22    26164079    rs133902    C    T    2156.50    PASS    AB=0.595;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.981;DB;DP=201;Dels=0.0;FS=0.534;HRun=0;HaplotypeScore=4.5551;MQ=59.66;MQ0=0;MQRankSum=0.288;QD=10.73;ReadPosRankSum=-0.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:119,81:201:99:2186,0,3769
22    26166011    rs133903    C    A    152.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.077;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.89;QD=8.47;ReadPosRankSum=-0.796;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:12,6:18:99:182,0,411
22    26166900    rs3859866    G    C    250.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.86;SNPEFF_AMINO_ACID_CHANGE=W547C;SNPEFF_CODON_CHANGE=tgG/tgC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26166839_26166951;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:284,21,0
22    26168558    rs3848858    A    G    147.89    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.387;QD=12.32;ReadPosRankSum=0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:6,6:12:99:178,0,174
22    26173484    rs12170856    G    A    105.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:138,12,0
22    26173661    rs5761170    T    C    587.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.37;SNPEFF_AMINO_ACID_CHANGE=W661R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26173550_26173748;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,20:20:51.13:620,51,0
22    26173888    rs9624897    G    C    59.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=14.94;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:1,3:4:9:92,9,0
22    26219412    rs5752226    T    C    653.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=38.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:686,51,0
22    26219723    .    C    CT    1996.23    PASS    AC=2;AF=1.00;AN=2;DP=55;FS=0.0;HRun=6;HaplotypeScore=119.7904;IndelType=I;MQ=60.78;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:1,54:55:99:2038,163,0
22    26222247    rs8143030    T    C    468.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:501,39,0
22    26222454    rs9624909    C    T    2016.29    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=64;Dels=0.0;FS=4.445;HRun=1;HaplotypeScore=1.9966;MQ=60.0;MQ0=0;MQRankSum=1.57;QD=31.5;ReadPosRankSum=-0.758;SNPEFF_AMINO_ACID_CHANGE=S925L;SNPEFF_CODON_CHANGE=tCa/tTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26222376_26222466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2049,120,0
22    26224632    rs3848861    G    A    253.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:286,21,0
22    26228757    rs35045598    TA    T    233.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=7;HaplotypeScore=50.6542;IndelType=D;MQ=60.0;MQ0=0;QD=25.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:276,27,0
22    26228797    rs3859879    A    G    547.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:581,45,0
22    26229142    rs6004789    G    A    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
22    26247456    rs5996988    G    A    219.40    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.804;DB;DP=28;Dels=0.0;FS=1.904;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.246;QD=7.84;ReadPosRankSum=0.148;SNPEFF_AMINO_ACID_CHANGE=G1265;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26247437_26247546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:19,9:28:99:249,0,602
22    26247607    rs6004798    C    T    50.87    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.642;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8317;MQ=60.0;MQ0=0;MQRankSum=-0.962;QD=2.83;ReadPosRankSum=-0.057;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:13,5:18:80.86:81,0,414
22    26273834    rs4822666    A    C    201.76    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-0.762;QD=22.42;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:2,7:9:58.15:232,0,58
22    26273836    rs4822667    G    T    206.07    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.296;QD=20.61;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:3,7:10:75.27:236,0,75
22    26273850    rs695428    G    C    235.96    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.938;DB;DP=14;Dels=0.0;FS=3.68;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-0.193;QD=16.85;ReadPosRankSum=1.892;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:6,8:14:99:266,0,165
22    26273893    rs4822668    G    C    560.69    PASS    AB=0.436;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.374;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.81;MQ0=0;MQRankSum=-0.326;QD=14.38;ReadPosRankSum=-1.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:17,22:39:99:591,0,529
22    26298754    rs2072016    G    A    476.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,15:15:39.11:510,39,0
22    26298874    rs2072017    T    C    54.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
22    26307237    rs2269628    A    G    39.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.14;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
22    26317155    rs739284    A    G    700.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,21:21:54.18:734,54,0
22    26317160    rs739285    G    A    318.43    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=2.627;DB;DP=23;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.657;QD=13.84;ReadPosRankSum=0.919;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:12,11:23:99:348,0,349
22    26342056    rs4820662    C    T    239.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:272,21,0
22    26343805    rs2072007    A    G    2372.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=1.7005;MQ=59.68;MQ0=0;QD=33.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2405,181,0
22    26344024    rs2072008    C    T    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
22    26346311    rs59715907    AT    A    426.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=11;HaplotypeScore=81.5946;IndelType=D;MQ=57.3;MQ0=0;QD=19.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    1/1:3,19:22:56.92:468,57,0
22    26388304    rs12166988    G    A    659.23    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.432;DB;DP=64;Dels=0.0;FS=3.63;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.663;QD=10.3;ReadPosRankSum=0.235;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:36,27:64:99:689,0,1112
22    26399432    rs7287184    C    A    169.35    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.545;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.154;QD=12.1;ReadPosRankSum=-0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYO18B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335473    GT:AD:DP:GQ:PL    0/1:7,7:14:99:199,0,231
22    26688838    rs17304075    C    T    1088.52    PASS    AB=0.58;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.412;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.946;MQ=59.26;MQ0=0;MQRankSum=-1.541;QD=12.37;ReadPosRankSum=-2.288;SNPEFF_AMINO_ACID_CHANGE=D187;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26688372_26689112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248933    GT:AD:DP:GQ:PL    0/1:51,37:88:99:1119,0,1524
22    26689105    rs17395296    G    A    178.14    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=22.27;ReadPosRankSum=-0.572;SNPEFF_AMINO_ACID_CHANGE=Q276;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26688372_26689112;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248933    GT:AD:DP:GQ:PL    0/1:2,6:8:60.80:208,0,61
22    26692913    rs140372463    T    C    275.61    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=0.88;DB;DP=21;Dels=0.0;FS=1.848;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.317;QD=13.12;ReadPosRankSum=0.317;SNPEFF_AMINO_ACID_CHANGE=P116;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26692854_26693046;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402979    GT:AD:DP:GQ:PL    0/1:10,11:21:99:306,0,294
22    26709560    .    ACACACACACG    A    364.60    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DP=12;FS=0.0;HRun=0;HaplotypeScore=131.6416;IndelType=D;MQ=55.8;MQ0=0;MQRankSum=0.597;QD=30.38;ReadPosRankSum=1.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248933    GT:AD:DP:GQ:PL    0/1:5,7:12:99:404,0,163
22    26746902    rs6005019    G    A    554.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.8;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248933    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:587,45,0
22    26761167    rs4820678    G    A    141.68    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=16;Dels=0.0;FS=4.26;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.356;QD=8.85;ReadPosRankSum=-1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248933    GT:AD:DP:GQ:PL    0/1:10,6:16:99:172,0,344
22    26761183    rs4822713    A    G    123.46    PASS    AB=0.739;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.455;DB;DP=23;Dels=0.0;FS=5.836;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.035;QD=5.37;ReadPosRankSum=0.875;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEZ6L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248933    GT:AD:DP:GQ:PL    0/1:17,6:23:99:153,0,625
22    26830478    rs77572172    A    G    2117.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASPHD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215906    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2150,169,0
22    26853905    rs1894704    C    A    230.51    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.766;DB;DP=17;Dels=0.0;FS=2.059;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.059;QD=13.56;ReadPosRankSum=0.412;SNPEFF_AMINO_ACID_CHANGE=Q620H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26853825_26853933;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402105    GT:AD:DP:GQ:PL    0/1:7,10:17:99:261,0,130
22    26853966    rs78776248    A    G    105.27    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=7;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=15.04;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522475    GT:AD:DP:GQ:PL    0/1:2,5:7:59.43:135,0,59
22    26853980    rs1894705    T    C    145.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522475    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:179,15,0
22    26854441    rs1894706    G    A    603.37    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.448;DB;DP=51;Dels=0.0;FS=2.434;HRun=0;HaplotypeScore=0.9983;MQ=59.09;MQ0=0;MQRankSum=0.156;QD=11.83;ReadPosRankSum=0.409;SNPEFF_AMINO_ACID_CHANGE=H601Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26854411_26854543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402105    GT:AD:DP:GQ:PL    0/1:28,23:51:99:633,0,788
22    26859942    rs5752330    C    T    658.98    PASS    AB=0.509;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.085;DB;DP=53;Dels=0.0;FS=2.418;HRun=0;HaplotypeScore=0.0;MQ=59.56;MQ0=0;MQRankSum=0.311;QD=12.43;ReadPosRankSum=-0.16;SNPEFF_AMINO_ACID_CHANGE=V547M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26859883_26860792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402105    GT:AD:DP:GQ:PL    0/1:27,26:53:99:689,0,831
22    26861545    rs3213583    A    G    914.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312736    GT:AD:DP:GQ:PL    1/1:0,28:28:72.23:947,72,0
22    26862153    rs739289    C    A    1063.73    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.628;DB;DP=72;Dels=0.0;FS=3.288;HRun=0;HaplotypeScore=0.9967;MQ=59.68;MQ0=0;MQRankSum=-1.104;QD=14.77;ReadPosRankSum=1.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312736    GT:AD:DP:GQ:PL    0/1:37,35:72:99:1094,0,1064
22    26862212    rs713998    T    C    956.65    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=1.326;DB;DP=65;Dels=0.0;FS=2.161;HRun=2;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.429;QD=14.72;ReadPosRankSum=-2.078;SNPEFF_AMINO_ACID_CHANGE=E224G;SNPEFF_CODON_CHANGE=gAg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26862192_26862228;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398141    GT:AD:DP:GQ:PL    0/1:29,36:65:99:987,0,778
22    26864658    rs739290    A    G    154.48    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DB;DP=8;Dels=0.0;FS=3.332;HRun=1;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=19.31;ReadPosRankSum=-1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312736    GT:AD:DP:GQ:PL    0/1:2,6:8:61.92:184,0,62
22    26877539    rs739291    C    T    171.01    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.398;QD=15.55;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=HPS4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473782    GT:AD:DP:GQ:PL    0/1:4,7:11:99:201,0,135
22    26884039    rs4820682    G    A    642.83    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=39;Dels=0.0;FS=1.293;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.245;QD=16.48;ReadPosRankSum=-0.188;SNPEFF_AMINO_ACID_CHANGE=A99T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26883995_26884254;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215917    GT:AD:DP:GQ:PL    0/1:15,24:39:99:673,0,427
22    26886953    rs34878449    GT    G    376.79    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=4.317;DB;DP=37;FS=4.353;HRun=10;HaplotypeScore=111.4491;IndelType=D;MQ=59.67;MQ0=0;MQRankSum=-0.383;QD=10.18;ReadPosRankSum=0.583;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405938    GT:AD:DP:GQ:PL    0/1:17,20:37:99:416,0,392
22    26887099    rs4820683    T    A    1129.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477945    GT:AD:DP:GQ:PL    1/1:0,31:31:87.28:1162,87,0
22    26887343    rs76272540    A    G    230.52    PASS    AB=0.353;AC=1;AF=0.50;AN=2;BaseQRankSum=1.356;DB;DP=17;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.9933;MQ=57.23;MQ0=0;MQRankSum=0.597;QD=13.56;ReadPosRankSum=1.139;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477945    GT:AD:DP:GQ:PL    0/1:6,11:17:99:261,0,194
22    26890086    rs78536867    A    T    563.96    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.262;DB;DP=44;Dels=0.0;FS=1.451;HRun=0;HaplotypeScore=0.734;MQ=59.48;MQ0=0;MQRankSum=0.012;QD=12.82;ReadPosRankSum=1.455;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215917    GT:AD:DP:GQ:PL    0/1:24,20:44:99:594,0,838
22    26891808    rs4822728    C    T    91.13    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.365;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-1.568;QD=9.11;ReadPosRankSum=0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215917    GT:AD:DP:GQ:PL    0/1:6,4:10:99:121,0,213
22    26891823    rs4822729    C    G    253.28    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.249;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.102;QD=12.06;ReadPosRankSum=-0.604;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRRD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215917    GT:AD:DP:GQ:PL    0/1:12,9:21:99:283,0,409
22    26894985    rs2187956    C    T    1217.50    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.193;DB;DP=87;Dels=0.0;FS=0.803;HRun=0;HaplotypeScore=2.1232;MQ=59.74;MQ0=0;MQRankSum=-0.421;QD=13.99;ReadPosRankSum=0.463;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493698    GT:AD:DP:GQ:PL    0/1:46,41:87:99:1247,0,1477
22    26895061    rs2157586    G    A    2330.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.68;MQ0=0;QD=32.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493698    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2364,181,0
22    26895337    rs1008530    G    A    970.26    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=2.68;DB;DP=53;Dels=0.0;FS=2.514;HRun=0;HaplotypeScore=0.9894;MQ=59.65;MQ0=0;MQRankSum=-0.235;QD=18.31;ReadPosRankSum=-0.235;SNPEFF_AMINO_ACID_CHANGE=H354;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26895070_26895597;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFIP11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405938    GT:AD:DP:GQ:PL    0/1:21,32:53:99:1000,0,587
22    26899474    rs134136    T    C    350.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFIP11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418876    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:383,30,0
22    26932150    rs3752523    G    A    658.50    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=2.357;DB;DP=57;Dels=0.0;FS=3.52;HRun=1;HaplotypeScore=3.561;MQ=59.19;MQ0=0;MQRankSum=0.725;QD=11.55;ReadPosRankSum=-0.445;SNPEFF_AMINO_ACID_CHANGE=P129L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26931861_26932452;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445720    GT:AD:DP:GQ:PL    0/1:31,26:57:99:688,0,1056
22    26936766    rs58274935    G    A    120.02    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.171;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.796;QD=6.67;ReadPosRankSum=-0.702;SNPEFF_AMINO_ACID_CHANGE=V210;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26936755_26937402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528868    GT:AD:DP:GQ:PL    0/1:12,6:18:99:150,0,408
22    26937327    rs4822735    C    G    938.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=A23;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_26936755_26937402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000528868    GT:AD:DP:GQ:PL    1/1:0,28:28:75.23:971,75,0
22    26951317    rs28402932    A    G    577.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338754    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:610,45,0
22    26956392    rs9613209    T    C    106.78    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.181;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.186;QD=9.71;ReadPosRankSum=-0.466;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338754    GT:AD:DP:GQ:PL    0/1:6,5:11:99:137,0,198
22    26956495    rs9613210    A    G    920.09    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.048;DB;DP=51;Dels=0.0;FS=2.853;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=-0.01;QD=18.04;ReadPosRankSum=0.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338754    GT:AD:DP:GQ:PL    0/1:21,30:51:99:950,0,642
22    26956562    rs58767350    G    A    1145.50    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=5.427;DB;DP=73;Dels=0.0;FS=4.026;HRun=0;HaplotypeScore=0.8667;MQ=58.79;MQ0=0;MQRankSum=0.271;QD=15.69;ReadPosRankSum=2.413;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338754    GT:AD:DP:GQ:PL    0/1:38,35:73:99:1175,0,1041
22    26957070    rs9608502    T    C    640.96    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.848;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=43.79;MQ0=1;MQRankSum=0.492;QD=15.26;ReadPosRankSum=0.602;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338754    GT:AD:DP:GQ:PL    0/1:17,25:42:99:671,0,479
22    26957307    rs56120868    G    T    256.75    MQFilter40    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.14;MQ0=1;MQRankSum=0.694;QD=18.34;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TPST2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338754    GT:AD:DP:GQ:PL    0/1:5,9:14:99:287,0,121
22    27004089    rs5761626    A    C    211.35    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.865;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.177;QD=15.1;ReadPosRankSum=0.865;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215939    GT:AD:DP:GQ:PL    0/1:6,8:14:99:241,0,203
22    27019128    rs2071860    C    T    1003.98    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.182;DB;DP=77;Dels=0.0;FS=0.994;HRun=0;HaplotypeScore=0.9999;MQ=59.1;MQ0=0;MQRankSum=0.303;QD=13.04;ReadPosRankSum=1.439;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354760    GT:AD:DP:GQ:PL    0/1:41,36:77:99:1034,0,1233
22    27019264    rs35520672    G    A    1175.51    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.052;DB;DP=86;Dels=0.0;FS=3.393;HRun=0;HaplotypeScore=0.9983;MQ=58.7;MQ0=0;MQRankSum=-1.527;QD=13.67;ReadPosRankSum=-0.78;SNPEFF_AMINO_ACID_CHANGE=V36M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_27019198_27019316;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354760    GT:AD:DP:GQ:PL    0/1:42,44:86:99:1206,0,1216
22    27021457    rs5761637    T    C    585.25    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.62;DB;DP=45;Dels=0.0;FS=3.317;HRun=0;HaplotypeScore=1.9981;MQ=58.45;MQ0=0;MQRankSum=1.154;QD=13.01;ReadPosRankSum=0.085;SNPEFF_AMINO_ACID_CHANGE=F57;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_27021445_27021586;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRYBA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000354760    GT:AD:DP:GQ:PL    0/1:22,23:45:99:615,0,749
22    28146769    rs2188157    GA    G    97.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=12;HaplotypeScore=47.4576;IndelType=D;MQ=60.0;MQ0=0;QD=10.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497225    GT:AD:DP:GQ:PL    1/1:0,9:9:17.92:139,18,0
22    28292667    rs17480565    G    A    251.18    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.179;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=-0.795;QD=13.95;ReadPosRankSum=-0.177;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460566    GT:AD:DP:GQ:PL    0/1:9,9:18:99:281,0,288
22    28293980    rs738451    G    C    249.51    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.855;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.386;QD=19.19;ReadPosRankSum=0.077;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PITPNB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320996    GT:AD:DP:GQ:PL    0/1:4,9:13:99:280,0,130
22    28378998    rs17482652    G    A    164.82    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.22;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.122;QD=9.7;ReadPosRankSum=0.049;SNPEFF_AMINO_ACID_CHANGE=L2219;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_28374004_28379839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397906    GT:AD:DP:GQ:PL    0/1:10,7:17:99:195,0,346
22    28389453    rs470101    T    C    31.39    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=6.28;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=T1766;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_28389275_28389506;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397906    GT:AD:DP:GQ:PL    0/1:2,3:5:61.38:61,0,68
22    28394985    rs75173815    C    T    156.30    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.067;QD=17.37;ReadPosRankSum=-1.179;SNPEFF_AMINO_ACID_CHANGE=S1554;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_28394528_28395248;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397906    GT:AD:DP:GQ:PL    0/1:2,7:9:49.42:186,0,49
22    28424932    rs78301408    G    T    169.83    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.839;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-1.356;QD=12.13;ReadPosRankSum=-0.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397906    GT:AD:DP:GQ:PL    0/1:8,6:14:99:200,0,280
22    28426321    rs17483998    C    T    187.23    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=0.689;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.529;QD=15.6;ReadPosRankSum=2.141;SNPEFF_AMINO_ACID_CHANGE=A1322;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_28426214_28426354;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397906    GT:AD:DP:GQ:PL    0/1:5,7:12:99:217,0,123
22    28692174    rs16986266    T    C    936.96    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=3.544;DB;DP=80;Dels=0.0;FS=12.628;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;MQRankSum=0.333;QD=11.71;ReadPosRankSum=-0.601;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490475    GT:AD:DP:GQ:PL    0/1:47,33:80:99:967,0,1426
22    28693367    rs74929608    T    C    31.80    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.36;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397906    GT:AD:DP:GQ:PL    0/1:2,3:5:61.79:62,0,70
22    29025880    rs76542858    T    C    221.22    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=1.469;DB;DP=22;Dels=0.0;FS=3.882;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.601;QD=10.06;ReadPosRankSum=-0.735;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTC28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397906    GT:AD:DP:GQ:PL    0/1:13,9:22:99:251,0,447
22    29085401    rs17883639    G    A    408.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.175;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.35;MQ0=1;MQRankSum=-0.124;QD=19.45;ReadPosRankSum=1.691;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328354    GT:AD:DP:GQ:PL    0/1:7,14:21:99:438,0,167
22    29085414    rs17886970    T    C    247.73    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=46.65;MQ0=1;MQRankSum=0.696;QD=22.52;ReadPosRankSum=-1.044;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328354    GT:AD:DP:GQ:PL    1/1:2,9:11:7.35:279,7,0
22    29089846    rs111466304    C    T    65.89    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.63;MQ0=0;MQRankSum=-0.956;QD=8.24;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425190    GT:AD:DP:GQ:PL    0/1:5,3:8:95.89:96,0,180
22    29091037    rs5762749    G    C    3332.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=57.97;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425190    GT:AD:DP:GQ:PL    1/1:1,99:100:99:3332,244,0
22    29104940    rs71752225    CAA    C    226.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=22;HaplotypeScore=176.7059;IndelType=D;MQ=53.52;MQ0=0;QD=15.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CHEK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439200    GT:AD:DP:GQ:PL    1/1:2,12:15:44.03:268,44,0
22    29140823    rs5752783    A    C    126.06    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=0.322;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=15.76;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HSCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216027    GT:AD:DP:GQ:PL    0/1:3,5:8:96.55:156,0,97
22    29179739    rs2347447    C    A    47.56    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.0;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=-0.667;QD=3.4;ReadPosRankSum=-1.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444523    GT:AD:DP:GQ:PL    0/1:9,5:14:77.56:78,0,338
22    29181868    rs5752798    A    G    43.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC117;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444523    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
22    29191879    rs2097461    T    C    44.90    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.202;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=3.21;ReadPosRankSum=-1.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482720    GT:AD:DP:GQ:PL    0/1:10,4:14:74.90:75,0,363
22    29196043    rs112927931    C    CT    641.58    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.352;DB;DP=32;FS=1.854;HRun=1;HaplotypeScore=70.8811;IndelType=I;MQ=60.34;MQ0=0;MQRankSum=-1.176;QD=20.05;ReadPosRankSum=1.035;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216037    GT:AD:DP:GQ:PL    0/1:14,18:32:99:681,0,342
22    29414001    rs2347790    A    G    331.05    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=0.329;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-0.266;QD=8.95;ReadPosRankSum=1.331;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332811    GT:AD:DP:GQ:PL    0/1:23,14:37:99:361,0,733
22    29439201    rs9613785    G    A    305.59    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.294;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=25.47;ReadPosRankSum=-1.479;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332811    GT:AD:DP:GQ:PL    0/1:3,9:12:82.89:336,0,83
22    29440692    rs713834    A    C    155.43    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.813;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.38;QD=9.71;ReadPosRankSum=-2.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332811    GT:AD:DP:GQ:PL    0/1:10,6:16:99:185,0,365
22    29446611    rs5997435    A    C    73.38    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.034;DB;DP=11;Dels=0.0;FS=2.632;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.663;QD=6.67;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=P521;SNPEFF_CODON_CHANGE=ccA/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29445185_29446936;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000462485    GT:AD:DP:GQ:PL    0/1:7,4:11:99:103,0,214
22    29446975    rs6005967    T    C    40.69    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.778;DB;DP=14;Dels=0.0;FS=5.88;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-2.024;QD=2.91;ReadPosRankSum=-2.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332811    GT:AD:DP:GQ:PL    0/1:11,3:14:70.68:71,0,367
22    29449477    rs2294239    A    G    318.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.482;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.047;QD=17.68;ReadPosRankSum=0.609;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332811    GT:AD:DP:GQ:PL    0/1:6,12:18:99:348,0,189
22    29450840    rs11330684    TC    T    764.22    PASS    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=5.968;DB;DP=79;FS=0.938;HRun=5;HaplotypeScore=239.4484;IndelType=D;MQ=60.26;MQ0=0;MQRankSum=0.474;QD=9.67;ReadPosRankSum=0.817;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216071    GT:AD:DP:GQ:PL    0/1:48,31:79:99:803,0,1498
22    29450923    rs2179129    A    G    1094.07    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=2.707;DB;DP=75;Dels=0.0;FS=0.896;HRun=0;HaplotypeScore=0.0;MQ=59.67;MQ0=0;MQRankSum=0.899;QD=14.59;ReadPosRankSum=-0.801;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf31;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216071    GT:AD:DP:GQ:PL    0/1:39,36:75:99:1124,0,1165
22    29456733    rs6005977    T    C    1233    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.261;DB;DP=79;Dels=0.0;FS=4.444;HRun=0;HaplotypeScore=1.933;MQ=59.71;MQ0=0;MQRankSum=0.369;QD=15.61;ReadPosRankSum=-1.294;SNPEFF_AMINO_ACID_CHANGE=S34;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29456403_29456831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf31;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216071    GT:AD:DP:GQ:PL    0/1:36,43:79:99:1263,0,1115
22    29490497    rs134657    G    A    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KREMEN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327813    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
22    29650458    rs909794    C    T    77.17    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.3;QD=11.02;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334018    GT:AD:DP:GQ:PL    0/1:3,4:7:83.98:107,0,84
22    29656389    rs2231398    G    T    322.82    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.049;DB;DP=18;Dels=0.0;FS=1.957;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.83;QD=17.93;ReadPosRankSum=0.83;SNPEFF_AMINO_ACID_CHANGE=A303;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29656315_29656602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RHBDD3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216085    GT:AD:DP:GQ:PL    0/1:8,10:18:99:353,0,165
22    29656905    rs141666277    G    A    69.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.6;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EMID1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334018    GT:AD:DP:GQ:PL    0/1:3,3:6:99:100,0,102
22    29664423    rs2301291    G    A    519.18    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.741;DB;DP=33;Dels=0.0;FS=1.688;HRun=2;HaplotypeScore=2.8409;MQ=57.15;MQ0=0;MQRankSum=1.503;QD=15.73;ReadPosRankSum=-1.545;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EWSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331029    GT:AD:DP:GQ:PL    0/1:14,19:33:99:549,0,300
22    29668432    .    AATAATTAC    A    1656.68    PASS    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=5.923;DP=52;FS=0.0;HRun=0;HaplotypeScore=396.3427;IndelType=D;MQ=50.98;MQ0=0;MQRankSum=-3.88;QD=31.86;ReadPosRankSum=0.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EWSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331029    GT:AD:DP:GQ:PL    0/1:29,23:52:99:1696,0,3001
22    29669693    rs4820804    T    C    457.26    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.656;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.33;MQ0=0;MQRankSum=0.198;QD=12.36;ReadPosRankSum=-1.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EWSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331029    GT:AD:DP:GQ:PL    0/1:18,19:37:99:487,0,604
22    29692488    rs140065    G    T    537.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EWSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331029    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:571,42,0
22    29692497    rs131190    G    T    512.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EWSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331029    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:546,39,0
22    29694004    .    CTTGA    C    292.97    PASS    AB=0.781;AC=1;AF=0.50;AN=2;BaseQRankSum=3.359;DP=25;FS=0.0;HRun=0;HaplotypeScore=110.4916;IndelType=D;MQ=55.21;MQ0=0;MQRankSum=-2.391;QD=11.72;ReadPosRankSum=-0.757;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EWSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331029    GT:AD:DP:GQ:PL    0/1:18,7:25:99:332,0,1401
22    29704125    rs11090564    C    T    63.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=9;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=48.72;MQ0=0;MQRankSum=-0.72;QD=7.07;ReadPosRankSum=1.38;SNPEFF_AMINO_ACID_CHANGE=G10;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29704077_29704728;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333679    GT:AD:DP:GQ:PL    0/1:4,4:9:64.91:94,0,65
22    29707639    rs34777709    G    GC    174.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=23.3339;IndelType=I;MQ=60.0;MQ0=0;QD=34.87;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_22_29707452_29708774;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAS2L1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000403764    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:216,15,0
22    29724792    rs6006095    T    C    187.88    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.536;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.6;QD=15.66;ReadPosRankSum=-1.134;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415447    GT:AD:DP:GQ:PL    0/1:4,8:12:99:218,0,120
22    29725639    rs111588517    G    A    136.56    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.058;DB;DP=15;Dels=0.0;FS=2.158;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.984;QD=9.1;ReadPosRankSum=-0.174;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472057    GT:AD:DP:GQ:PL    0/1:8,7:15:99:167,0,279
22    29725893    rs2071578    T    C    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472057    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:73,0,24
22    29727886    rs2857465    T    C    646.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=24.86;SNPEFF_AMINO_ACID_CHANGE=T750A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29727776_29727905;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP1B1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317368    GT:AD:DP:GQ:PL    1/1:0,26:26:57.15:679,57,0
22    29734797    rs6006098    G    A    339.99    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.415;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.24;MQ0=0;MQRankSum=0.837;QD=14.17;ReadPosRankSum=0.375;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421126    GT:AD:DP:GQ:PL    0/1:12,12:24:99:370,0,403
22    29734853    rs111806639    GC    G    974.91    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=4.251;DB;DP=62;FS=0.0;HRun=5;HaplotypeScore=229.01;IndelType=D;MQ=58.95;MQ0=0;MQRankSum=1.026;QD=15.72;ReadPosRankSum=-0.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP1B1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421126    GT:AD:DP:GQ:PL    0/1:26,36:62:99:1014,0,799
22    29755888    rs2072051    T    C    869.06    PASS    AB=0.404;AC=1;AF=0.50;AN=2;BaseQRankSum=0.354;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.292;QD=16.71;ReadPosRankSum=-1.713;SNPEFF_AMINO_ACID_CHANGE=L68;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29755813_29755948;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP1B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317368    GT:AD:DP:GQ:PL    0/1:21,31:52:99:899,0,668
22    29815161    rs140773932    G    C    2245.34    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=2.031;DB;DP=250;DS;Dels=0.0;FS=6.562;HRun=1;HaplotypeScore=4.8643;MQ=40.97;MQ0=18;MQRankSum=-0.979;QD=8.98;ReadPosRankSum=0.346;SNPEFF_AMINO_ACID_CHANGE=T42;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29815144_29815249;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=AP1B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415447    GT:AD:DP:GQ:PL    0/1:151,99:250:99:2275,0,3465
22    29833469    rs71329487    A    G    74.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.45;ReadPosRankSum=0.406;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354373    GT:AD:DP:GQ:PL    0/1:3,3:6:99:105,0,102
22    29833639    rs174718    C    G    1365.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.42;MQ0=0;QD=34.14;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354373    GT:AD:DP:GQ:PL    1/1:0,39:40:99:1398,108,0
22    29835060    rs16987627    T    C    1293.91    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.08;DB;DP=98;Dels=0.0;FS=1.738;HRun=0;HaplotypeScore=3.5704;MQ=57.86;MQ0=0;MQRankSum=-0.09;QD=13.2;ReadPosRankSum=-0.163;SNPEFF_AMINO_ACID_CHANGE=W94R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29834572_29835153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354373    GT:AD:DP:GQ:PL    0/1:46,52:98:99:1324,0,1410
22    29837537    rs3804076    T    C    772.16    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.098;DB;DP=71;Dels=0.0;FS=0.977;HRun=0;HaplotypeScore=1.6643;MQ=58.44;MQ0=0;MQRankSum=-0.607;QD=10.88;ReadPosRankSum=-0.48;SNPEFF_AMINO_ACID_CHANGE=M127T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29837531_29838444;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354373    GT:AD:DP:GQ:PL    0/1:39,32:71:99:802,0,1282
22    29837566    rs71324764    TTCC    T    1477.36    PASS    AB=0.699;AC=1;AF=0.50;AN=2;BaseQRankSum=7.529;DB;DP=86;FS=0.843;HRun=0;HaplotypeScore=448.7535;IndelType=D;MQ=58.57;MQ0=0;MQRankSum=0.391;QD=17.18;ReadPosRankSum=0.485;SNPEFF_AMINO_ACID_CHANGE=FL137F;SNPEFF_CODON_CHANGE=ttcctc/ttc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_22_29837531_29838444;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000354373    GT:AD:DP:GQ:PL    0/1:49,37:86:99:1516,0,2702
22    29837884    rs12484086    C    T    682.51    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.872;DB;DP=72;Dels=0.0;FS=5.31;HRun=0;HaplotypeScore=0.9665;MQ=50.57;MQ0=1;MQRankSum=3.089;QD=9.48;ReadPosRankSum=-0.109;SNPEFF_AMINO_ACID_CHANGE=Q243*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_22_29837531_29838444;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000354373    GT:AD:DP:GQ:PL    0/1:45,27:72:99:712,0,1163
22    29838203    rs13053624    A    T    149.10    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=18.64;ReadPosRankSum=0.684;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354373    GT:AD:DP:GQ:PL    0/1:3,5:8:99:179,0,104
22    29879140    .    T    G    53.76    MQFilter40    AC=2;AF=1.00;AN=2;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=34.44;MQ0=0;QD=6.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310624    GT:AD:DP:GQ:PL    1/1:0,8:8:9.01:86,9,0
22    29879265    .    CA    C    78.45    QDFilter2    AB=0.814;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.158;DP=56;FS=0.0;HRun=15;HaplotypeScore=293.0612;IndelType=D;MQ=54.41;MQ0=0;MQRankSum=1.214;QD=1.38;ReadPosRankSum=-0.707;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310624    GT:AD:DP:GQ:PL    0/1:43,12:56:99:117,0,775
22    29881884    rs4823040    G    A    895.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6208;MQ=59.17;MQ0=0;QD=31.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310624    GT:AD:DP:GQ:PL    1/1:0,27:28:75.20:929,75,0
22    29885567    .    A    AAAGTCCCCTGAGAAGGCC    14549.02    PASS    AC=2;AF=1.00;AN=2;DP=158;FS=0.0;HRun=0;HaplotypeScore=1756.26;IndelType=I;MQ=48.03;MQ0=0;QD=89.81;SNPEFF_AMINO_ACID_CHANGE=-647KSPEKA;SNPEFF_CODON_CHANGE=-/AAGTCCCCTGAGAAGGCC;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_22_29884838_29887379;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310624    GT:AD:DP:GQ:PL    1/1:85,36:158:99:14549,301,0
22    29885594    rs79235463    A    T    369.40    HaplotypeScoreFilter13    AB=0.823;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.163;DB;DP=148;Dels=0.0;FS=11.925;HRun=0;HaplotypeScore=21.8827;MQ=47.2;MQ0=0;MQRankSum=-0.261;QD=2.5;ReadPosRankSum=-4.766;SNPEFF_AMINO_ACID_CHANGE=P655;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29884838_29887379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310624    GT:AD:DP:GQ:PL    0/1:121,26:148:99:399,0,2191
22    29885669    .    CAAGTCCCCAGTGAAGGCAGAAGCA    C    845.03    PASS    AB=0.955;AC=1;AF=0.50;AN=2;BaseQRankSum=4.916;DP=186;FS=24.657;HRun=0;HaplotypeScore=3378.6368;IndelType=D;MQ=49.75;MQ0=0;MQRankSum=-4.524;QD=4.0;ReadPosRankSum=1.199;SNPEFF_AMINO_ACID_CHANGE=KSPVKAEA681-;SNPEFF_CODON_CHANGE=aagtccccagtgaaggcagaagca/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_22_29884838_29887379;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000310624    GT:AD:DP:GQ:PL    0/1:201,10:186:99:884,0,18396
22    29885861    rs165923    T    C    5547.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6498;MQ=59.36;MQ0=0;QD=32.25;SNPEFF_AMINO_ACID_CHANGE=A744;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29884838_29887379;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000310624    GT:AD:DP:GQ:PL    1/1:0,171:172:99:5548,415,0
22    29886413    rs165625    A    G    1840.84    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=59.61;MQ0=0;MQRankSum=-0.418;QD=31.2;ReadPosRankSum=0.896;SNPEFF_AMINO_ACID_CHANGE=V879;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29886019_29886692;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328842    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1874,147,0
22    29886893    rs1061373    G    T    205.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=29.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NEFH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328842    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:238,18,0
22    29908154    rs2007668    G    T    1118.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397871    GT:AD:DP:GQ:PL    1/1:0,32:32:87.25:1151,87,0
22    29912885    rs12161054    G    A    203.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484924    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:236,18,0
22    29913272    rs737976    C    T    858.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=33.0;SNPEFF_AMINO_ACID_CHANGE=V525I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29913252_29913355;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397871    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:891,66,0
22    29915144    rs2072301    C    T    1624.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8893;MQ=60.0;MQ0=0;QD=28.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397871    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1657,132,0
22    29939683    rs5763315    T    C    138.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=27.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397871    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:172,15,0
22    29957013    rs468692    C    T    520.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPSNAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000437094    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:553,42,0
22    29957570    rs1058642    G    A    2001.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=L168;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_29957495_29957635;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPSNAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216121    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2035,153,0
22    29957911    rs469295    T    C    681.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPSNAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216121    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:714,54,0
22    29966083    rs456285    C    T    675.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NIPSNAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216121    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:708,51,0
22    29999878    rs1800540    G    C    36.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.09;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361166    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
22    30033036    rs2530662    T    A    82.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334961    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:114,9,0
22    30054024    rs2071622    G    A    120.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334961    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:153,12,0
22    30056945    rs2857640    G    A    253.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334961    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:286,21,0
22    30057574    rs2857641    A    G    47.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334961    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
22    30064117    rs2252472    C    T    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334961    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
22    30077361    rs140086    G    A    1333.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334961    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1367,102,0
22    30079213    rs7291645    T    C    287.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334961    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
22    30124614    rs140096    A    T    990.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344318    GT:AD:DP:GQ:PL    1/1:0,29:29:75.24:1024,75,0
22    30124833    rs140097    T    C    224.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344318    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:257,21,0
22    30138548    rs140120    T    C    561.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489010    GT:AD:DP:GQ:PL    1/1:0,15:15:45.12:595,45,0
22    30163332    rs140134    G    A    775.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.11;MQ0=0;QD=29.84;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UQCR10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330029    GT:AD:DP:GQ:PL    1/1:0,26:26:63.20:809,63,0
22    30165412    rs140139    A    G    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=15.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UQCR10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330029    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
22    30184950    rs7954    A    G    1298.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.945;QD=28.87;ReadPosRankSum=0.709;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411532    GT:AD:DP:GQ:PL    1/1:1,44:45:99:1332,114,0
22    30188245    rs5752962    T    G    919.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411532    GT:AD:DP:GQ:PL    1/1:0,24:24:72.23:953,72,0
22    30188611    rs9614057    T    C    758.62    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.737;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.603;QD=14.59;ReadPosRankSum=0.603;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411532    GT:AD:DP:GQ:PL    0/1:22,30:52:99:789,0,654
22    30200893    rs2074706    G    C    1826.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=36.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464287    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1860,144,0
22    30200936    rs36572    T    C    827.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464287    GT:AD:DP:GQ:PL    1/1:0,23:23:63.21:861,63,0
22    30202774    rs737945    G    C    1040.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464287    GT:AD:DP:GQ:PL    1/1:0,28:28:78.26:1073,78,0
22    30211876    rs713657    A    G    87.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307790    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
22    30221826    rs9306465    T    A    748.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=29.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASCC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307790    GT:AD:DP:GQ:PL    1/1:0,25:25:57.19:782,57,0
22    30340138    rs36604    C    A    91.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323630    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
22    30340356    rs36605    A    T    689.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=58.84;MQ0=0;QD=34.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323630    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:723,54,0
22    30340410    rs36606    A    T    367.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323630    GT:AD:DP:GQ:PL    1/1:0,11:11:33.05:401,33,0
22    30366924    rs34749290    C    CT    334.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=10;HaplotypeScore=66.1608;IndelType=I;MQ=51.77;MQ0=0;QD=27.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323630    GT:AD:DP:GQ:PL    1/1:0,12:12:36.08:377,36,0
22    30374281    rs9306468    T    C    235.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323630    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:268,21,0
22    30374621    rs997913    T    A    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323630    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
22    30384572    rs5763671    G    A    1135.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323630    GT:AD:DP:GQ:PL    1/1:0,32:32:87.25:1169,87,0
22    30394623    rs5763689    T    C    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323630    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
22    30660517    rs1476576    A    C    89.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215781    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
22    30660521    rs75951407    C    T    78.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215781    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
22    30681797    rs6147585    T    TCTGCCCCAGCCCTTGGTGCTCCCC    1419.74    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=127.028;IndelType=I;MQ=46.87;MQ0=0;MQRankSum=-1.159;QD=157.75;ReadPosRankSum=1.652;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GATSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415484    GT:AD:DP:GQ:PL    0/1:4,2:9:99:1459,0,354
22    30685560    rs1860217    G    C    41    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.67;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215790    GT:AD:DP:GQ:PL    0/1:1,2:3:24.41:71,0,24
22    30691631    rs2097919    G    A    70.63    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=8.83;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D10A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490449    GT:AD:DP:GQ:PL    0/1:5,3:8:99:101,0,153
22    30736147    rs2074732    G    A    42.06    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.02;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447376    GT:AD:DP:GQ:PL    0/1:1,2:3:26.22:72,0,26
22    30736911    rs5749066    G    A    154.98    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.198;QD=19.37;ReadPosRankSum=-1.495;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447376    GT:AD:DP:GQ:PL    0/1:2,6:8:57.14:185,0,57
22    30738161    rs9608885    C    T    650.49    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.65;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.678;QD=16.68;ReadPosRankSum=-0.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447376    GT:AD:DP:GQ:PL    0/1:15,24:39:99:680,0,487
22    30738737    rs5753080    G    A    433.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.788;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.701;QD=14.45;ReadPosRankSum=-0.332;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463818    GT:AD:DP:GQ:PL    0/1:15,15:30:99:464,0,488
22    30742623    rs740221    T    G    109.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.191;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.869;QD=9.16;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SF3A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215793    GT:AD:DP:GQ:PL    0/1:6,6:12:99:140,0,202
22    30771554    rs2015035    T    G    535.64    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=1.985;DB;DP=33;Dels=0.0;FS=1.377;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.492;QD=16.23;ReadPosRankSum=0.018;SNPEFF_AMINO_ACID_CHANGE=S587A;SNPEFF_CODON_CHANGE=Tcc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30771468_30771652;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC157;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338306    GT:AD:DP:GQ:PL    0/1:14,19:33:99:566,0,425
22    30776419    rs757870    T    C    178.88    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.715;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=0.382;QD=16.26;ReadPosRankSum=-0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC157;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338306    GT:AD:DP:GQ:PL    0/1:3,8:11:95.32:209,0,95
22    30780503    rs41282469    G    A    138.41    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.851;QD=13.84;ReadPosRankSum=1.098;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNF215;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431544    GT:AD:DP:GQ:PL    0/1:5,5:10:99:168,0,164
22    30782089    rs5997629    A    G    216.61    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=2.045;DB;DP=28;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.8321;MQ=57.48;MQ0=0;MQRankSum=-1.736;QD=7.74;ReadPosRankSum=-1.813;SNPEFF_AMINO_ACID_CHANGE=L157;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30782059_30782130;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNF215;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382363    GT:AD:DP:GQ:PL    0/1:16,12:28:99:247,0,414
22    30795484    rs5753124    G    C    33.72    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.27;MQ0=0;MQRankSum=1.38;QD=5.62;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNF215;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431544    GT:AD:DP:GQ:PL    0/1:4,2:6:63.71:64,0,116
22    30802444    rs2072157    C    T    312.29    PASS    AB=0.389;AC=1;AF=0.50;AN=2;BaseQRankSum=1.449;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.996;QD=17.35;ReadPosRankSum=-1.359;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNF215;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431544    GT:AD:DP:GQ:PL    0/1:7,11:18:99:342,0,180
22    30803289    rs2074651    G    C    808.65    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=2.455;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=17.58;ReadPosRankSum=-0.034;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RNF215;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431544    GT:AD:DP:GQ:PL    0/1:20,26:46:99:839,0,666
22    30812549    rs5997642    C    G    410.65    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=2.607;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.695;QD=17.11;ReadPosRankSum=1.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428195    GT:AD:DP:GQ:PL    0/1:11,13:24:99:441,0,366
22    30822920    rs79891672    T    TG    433.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=22.9221;IndelType=I;MQ=58.76;MQ0=0;QD=39.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312932    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:475,33,0
22    30823065    rs2072159    G    A    199.56    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.124;QD=10.5;ReadPosRankSum=0.784;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312932    GT:AD:DP:GQ:PL    0/1:11,8:19:99:230,0,353
22    30823196    rs5753130    T    C    795.85    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.924;DB;DP=64;Dels=0.0;FS=2.46;HRun=1;HaplotypeScore=1.7621;MQ=59.64;MQ0=0;MQRankSum=-0.806;QD=12.44;ReadPosRankSum=-0.244;SNPEFF_AMINO_ACID_CHANGE=T250;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30823158_30823390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=RP4-539M6.19;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000439838    GT:AD:DP:GQ:PL    0/1:31,31:64:99:826,0,962
22    30856121    rs35764129    G    A    527.58    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.65;QD=13.19;ReadPosRankSum=0.433;SNPEFF_AMINO_ACID_CHANGE=R287C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30855493_30856129;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402286    GT:AD:DP:GQ:PL    0/1:21,19:40:99:558,0,586
22    30857373    rs2240345    A    C    783.09    PASS    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=1.06;DB;DP=59;Dels=0.0;FS=2.15;HRun=1;HaplotypeScore=2.6202;MQ=59.22;MQ0=0;MQRankSum=1.761;QD=13.27;ReadPosRankSum=0.514;SNPEFF_AMINO_ACID_CHANGE=D258E;SNPEFF_CODON_CHANGE=gaT/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30857297_30857466;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402286    GT:AD:DP:GQ:PL    0/1:27,32:59:99:813,0,882
22    30857448    rs5749104    A    G    614.64    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.542;DB;DP=54;Dels=0.0;FS=4.016;HRun=0;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.052;QD=11.38;ReadPosRankSum=0.367;SNPEFF_AMINO_ACID_CHANGE=D233;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30857297_30857466;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402286    GT:AD:DP:GQ:PL    0/1:31,23:54:99:645,0,954
22    30860830    rs2269961    C    T    1033.80    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=0.301;DB;DP=80;Dels=0.0;FS=1.865;HRun=0;HaplotypeScore=0.734;MQ=59.13;MQ0=0;MQRankSum=0.015;QD=12.92;ReadPosRankSum=0.291;SNPEFF_AMINO_ACID_CHANGE=R137H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30860807_30860890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402286    GT:AD:DP:GQ:PL    0/1:41,39:80:99:1064,0,1216
22    30862400    rs1057995    T    A    495.76    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.941;QD=15.49;ReadPosRankSum=1.301;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215812    GT:AD:DP:GQ:PL    0/1:13,19:32:99:526,0,408
22    30862839    rs5753161    A    G    68.63    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=13.73;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215812    GT:AD:DP:GQ:PL    0/1:2,3:5:66.83:99,0,67
22    30863163    rs5997653    C    T    35.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215812    GT:AD:DP:GQ:PL    0/1:3,2:5:65.61:66,0,77
22    30864692    rs4820854    G    A    1093.54    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.816;DB;DP=95;Dels=0.0;FS=0.827;HRun=4;HaplotypeScore=0.9734;MQ=59.76;MQ0=0;MQRankSum=-0.571;QD=11.51;ReadPosRankSum=1.469;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215812    GT:AD:DP:GQ:PL    0/1:55,40:95:99:1124,0,1684
22    30864817    rs2269963    A    G    549.42    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.617;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.155;QD=14.85;ReadPosRankSum=-0.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215812    GT:AD:DP:GQ:PL    0/1:18,18:37:99:579,0,584
22    30864897    rs5753162    A    T    44.10    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=3.68;ReadPosRankSum=-0.925;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_30864776_30864945;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402286    GT:AD:DP:GQ:PL    0/1:9,3:12:74.10:74,0,312
22    30865813    rs4820858    A    C    101.87    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.359;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.929;QD=8.49;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215812    GT:AD:DP:GQ:PL    0/1:8,4:12:99:132,0,286
22    30865844    rs9620998    C    T    136.93    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.396;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=-0.317;QD=6.85;ReadPosRankSum=-0.158;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215812    GT:AD:DP:GQ:PL    0/1:13,7:20:99:167,0,480
22    30866380    rs2269964    T    C    295.67    PASS    AB=0.357;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.665;MQ=60.0;MQ0=0;MQRankSum=1.2;QD=21.12;ReadPosRankSum=-1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215812    GT:AD:DP:GQ:PL    0/1:5,9:14:99:326,0,127
22    30927975    rs5749118    C    T    157.63    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.299;QD=9.27;ReadPosRankSum=-0.529;SNPEFF_AMINO_ACID_CHANGE=R145K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30927890_30927985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEC14L6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402034    GT:AD:DP:GQ:PL    0/1:9,8:17:99:188,0,259
22    30977353    rs42942    T    A    401.74    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=20;Dels=0.0;FS=1.871;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;MQRankSum=0.733;QD=20.09;ReadPosRankSum=0.579;SNPEFF_AMINO_ACID_CHANGE=T125S;SNPEFF_CODON_CHANGE=Acc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_30977321_30977395;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PES1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402281    GT:AD:DP:GQ:PL    0/1:8,12:20:99:432,0,229
22    30980503    rs5997691    G    C    127.49    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=15;Dels=0.0;FS=2.027;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-1.614;QD=8.5;ReadPosRankSum=-0.323;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PES1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433575    GT:AD:DP:GQ:PL    0/1:9,6:15:99:157,0,253
22    31011882    rs4820021    A    T    102.48    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=12.81;ReadPosRankSum=-1.368;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423350    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,143
22    31089958    rs111906282    G    GA    248.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.355;DB;DP=18;FS=0.0;HRun=13;HaplotypeScore=130.5439;IndelType=I;MQ=53.5;MQ0=0;MQRankSum=0.474;QD=13.82;ReadPosRankSum=-0.237;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464734    GT:AD:DP:GQ:PL    1/1:7,11:18:1.31:287,1,0
22    31266546    rs2301816    T    C    787.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;QD=30.29;SNPEFF_AMINO_ACID_CHANGE=A155;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31266416_31266669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407373    GT:AD:DP:GQ:PL    1/1:0,26:26:66.18:821,66,0
22    31266777    rs4820909    T    C    199.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477355    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:233,21,0
22    31266830    rs4820030    T    C    168.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477355    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
22    31285680    rs5749186    G    A    512.26    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.163;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5655;MQ=58.89;MQ0=0;MQRankSum=-0.771;QD=12.2;ReadPosRankSum=-0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424224    GT:AD:DP:GQ:PL    0/1:23,19:42:99:542,0,765
22    31289245    .    G    C    464.32    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=0.171;DP=23;Dels=0.0;FS=1.707;HRun=0;HaplotypeScore=0.8667;MQ=58.99;MQ0=0;MQRankSum=0.58;QD=20.19;ReadPosRankSum=0.444;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424224    GT:AD:DP:GQ:PL    0/1:8,15:23:99:494,0,225
22    31302125    rs3804084    C    G    353.68    PASS    AB=0.278;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.676;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.493;QD=19.65;ReadPosRankSum=-0.887;SNPEFF_AMINO_ACID_CHANGE=R844G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31301824_31302551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382310    GT:AD:DP:GQ:PL    0/1:5,13:18:99:384,0,150
22    31302233    rs3804085    T    C    837.48    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=1.947;DB;DP=60;Dels=0.0;FS=4.418;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.027;QD=13.96;ReadPosRankSum=-0.2;SNPEFF_AMINO_ACID_CHANGE=D430;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31302184_31302608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OSBP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535268    GT:AD:DP:GQ:PL    0/1:26,34:60:99:867,0,744
22    31323900    rs5753394    G    C    36.33    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.08;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215862    GT:AD:DP:GQ:PL    0/1:2,2:4:66.32:66,0,69
22    31329056    rs2074578    G    C    1329.39    PASS    AB=0.427;AC=1;AF=0.50;AN=2;BaseQRankSum=2.235;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=59.69;MQ0=0;MQRankSum=-0.022;QD=17.73;ReadPosRankSum=0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469915    GT:AD:DP:GQ:PL    0/1:32,43:75:99:1359,0,988
22    31329954    rs5753398    A    G    318.51    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.503;DB;DP=30;Dels=0.0;FS=1.996;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.418;QD=10.62;ReadPosRankSum=-1.164;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469915    GT:AD:DP:GQ:PL    0/1:18,12:30:99:348,0,579
22    31333631    rs3747151    T    C    622.45    PASS    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.88;DB;DP=32;Dels=0.0;FS=3.393;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-0.824;QD=19.45;ReadPosRankSum=1.204;SNPEFF_AMINO_ACID_CHANGE=P417;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31333570_31333698;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215862    GT:AD:DP:GQ:PL    0/1:10,22:32:99:652,0,321
22    31335724    rs1005252    T    A    179.89    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.884;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.5801;MQ=60.0;MQ0=0;MQRankSum=-1.709;QD=11.24;ReadPosRankSum=-1.237;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476152    GT:AD:DP:GQ:PL    0/1:9,6:16:99:210,0,292
22    31342376    rs2072132    G    C    1368.58    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.638;DB;DP=93;Dels=0.0;FS=2.769;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.395;QD=14.72;ReadPosRankSum=-0.7;SNPEFF_AMINO_ACID_CHANGE=T126;SNPEFF_CODON_CHANGE=acC/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31342328_31342436;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397641    GT:AD:DP:GQ:PL    0/1:45,48:93:99:1399,0,1340
22    31342594    rs5753403    C    T    126.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215862    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:159,12,0
22    31354653    rs737924    G    A    318.17    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.184;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.17;MQ0=0;MQRankSum=0.276;QD=11.36;ReadPosRankSum=0.138;SNPEFF_AMINO_ACID_CHANGE=A32;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31354627_31354680;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397641    GT:AD:DP:GQ:PL    0/1:15,13:28:99:348,0,387
22    31367691    .    T    G    1660.95    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.108;DP=137;Dels=0.0;FS=0.639;HRun=3;HaplotypeScore=0.9916;MQ=59.83;MQ0=0;MQRankSum=-0.429;QD=12.12;ReadPosRankSum=0.971;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464734    GT:AD:DP:GQ:PL    0/1:71,66:137:99:1691,0,2106
22    31491295    rs3205187    G    C    544.98    PASS    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=28;Dels=0.0;FS=3.565;HRun=1;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=-0.612;QD=19.46;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=A146P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31491289_31491441;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTN;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404574    GT:AD:DP:GQ:PL    0/1:11,17:28:99:575,0,306
22    31493164    rs41282559    C    T    523.69    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.599;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=59.06;MQ0=0;MQRankSum=-0.236;QD=26.18;ReadPosRankSum=-0.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329852    GT:AD:DP:GQ:PL    0/1:4,16:20:99:554,0,106
22    31493460    rs5753458    T    C    209.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=20.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329852    GT:AD:DP:GQ:PL    1/1:0,10:10:24.04:243,24,0
22    31494568    rs33991833    A    AC    211.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=7;HaplotypeScore=24.6094;IndelType=I;MQ=60.0;MQ0=0;QD=30.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329852    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:254,21,0
22    31494866    rs4281997    G    T    34.94    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=3.979;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.82;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329852    GT:AD:DP:GQ:PL    0/1:4,2:6:64.94:65,0,122
22    31496837    rs13054770    C    A    120.16    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.9789;MQ=57.39;MQ0=0;MQRankSum=-0.729;QD=13.35;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-412A9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400299    GT:AD:DP:GQ:PL    0/1:4,5:9:99:150,0,112
22    31497054    rs5753459    A    C    464.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-412A9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400299    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:497,39,0
22    31497110    rs35657209    G    T    97.20    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=19.44;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-412A9.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400299    GT:AD:DP:GQ:PL    0/1:1,4:5:27.60:127,0,28
22    31501788    rs11705137    T    C    500.40    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.5;DB;DP=35;Dels=0.03;FS=4.856;HRun=1;HaplotypeScore=2.377;MQ=59.36;MQ0=0;MQRankSum=-1.259;QD=13.9;ReadPosRankSum=-0.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMTN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329852    GT:AD:DP:GQ:PL    0/1:18,17:35:99:530,0,623
22    31521404    rs2240432    G    A    215.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.641;DB;DP=22;Dels=0.0;FS=2.282;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.739;QD=9.82;ReadPosRankSum=-1.444;SNPEFF_AMINO_ACID_CHANGE=A160T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31520831_31521996;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INPP5J;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412277    GT:AD:DP:GQ:PL    0/1:11,11:22:99:246,0,247
22    31521850    rs2240431    A    C    977.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.59;MQ0=0;QD=29.62;SNPEFF_AMINO_ACID_CHANGE=T308;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31520831_31521996;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INPP5J;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412277    GT:AD:DP:GQ:PL    1/1:0,32:32:78.24:1010,78,0
22    31522064    rs7284757    G    A    71.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.684;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.322;QD=7.91;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INPP5J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412985    GT:AD:DP:GQ:PL    0/1:6,3:9:99:101,0,179
22    31529463    rs35342535    C    A    660.10    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.373;DB;DP=48;Dels=0.0;FS=1.162;HRun=0;HaplotypeScore=0.0;MQ=57.46;MQ0=0;MQRankSum=-1.013;QD=13.75;ReadPosRankSum=-0.117;SNPEFF_AMINO_ACID_CHANGE=T166;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31529392_31529469;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INPP5J;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401755    GT:AD:DP:GQ:PL    0/1:23,25:48:99:690,0,627
22    31529772    rs728206    C    T    596.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.664;DB;DP=38;Dels=0.0;FS=3.053;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.577;QD=15.69;ReadPosRankSum=0.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215885    GT:AD:DP:GQ:PL    0/1:19,19:38:99:626,0,544
22    31532568    rs757872    G    C    3291.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.6955;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INPP5J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331075    GT:AD:DP:GQ:PL    1/1:0,99:100:99:3291,259,0
22    31532608    rs2232184    G    A    2366.99    PASS    AB=0.466;AC=1;AF=0.50;AN=2;BaseQRankSum=2.524;DB;DP=161;Dels=0.0;FS=1.35;HRun=0;HaplotypeScore=2.8331;MQ=59.86;MQ0=0;MQRankSum=-0.96;QD=14.7;ReadPosRankSum=0.148;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=INPP5J;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331075    GT:AD:DP:GQ:PL    0/1:75,86:161:99:2397,0,2287
22    31533967    rs2074739    G    A    180.14    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.945;DB;DP=22;Dels=0.0;FS=2.78;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.307;QD=8.19;ReadPosRankSum=0.921;SNPEFF_AMINO_ACID_CHANGE=Y265;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31533696_31533979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215885    GT:AD:DP:GQ:PL    0/1:14,8:22:99:210,0,510
22    31535995    rs2074734    C    G    547.62    PASS    AB=0.439;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.349;DB;DP=41;Dels=0.0;FS=2.982;HRun=0;HaplotypeScore=0.8321;MQ=58.87;MQ0=0;MQRankSum=1.274;QD=13.36;ReadPosRankSum=-0.25;SNPEFF_AMINO_ACID_CHANGE=E116Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31535827_31536593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215885    GT:AD:DP:GQ:PL    0/1:18,23:41:99:578,0,645
22    31536133    rs2232176    A    C    695.32    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=1.03;DB;DP=71;Dels=0.0;FS=6.416;HRun=1;HaplotypeScore=0.6651;MQ=59.47;MQ0=0;MQRankSum=0.041;QD=9.79;ReadPosRankSum=-0.274;SNPEFF_AMINO_ACID_CHANGE=S70A;SNPEFF_CODON_CHANGE=Tca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31535827_31536593;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215885    GT:AD:DP:GQ:PL    0/1:41,30:71:99:725,0,1324
22    31582869    rs62237400    T    C    115.59    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.684;QD=14.45;ReadPosRankSum=-0.322;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF185;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266252    GT:AD:DP:GQ:PL    0/1:3,5:8:99:146,0,101
22    31583007    rs5997902    A    G    689.89    PASS    AB=0.521;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.186;DB;DP=48;Dels=0.0;FS=1.387;HRun=2;HaplotypeScore=0.9958;MQ=60.0;MQ0=0;MQRankSum=-0.764;QD=14.37;ReadPosRankSum=1.403;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF185;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266252    GT:AD:DP:GQ:PL    0/1:25,23:48:99:720,0,772
22    31600460    rs2413035    T    C    480.50    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.3;DB;DP=51;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.23;MQ0=0;MQRankSum=-0.293;QD=9.42;ReadPosRankSum=-1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF185;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266252    GT:AD:DP:GQ:PL    0/1:28,23:51:99:510,0,879
22    31658281    rs2073857    A    G    756.51    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=0.452;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=1.088;QD=17.59;ReadPosRankSum=0.721;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIMK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425203    GT:AD:DP:GQ:PL    0/1:19,24:43:99:786,0,654
22    31663842    rs2228619    C    G    1017.29    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.121;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.098;QD=14.13;ReadPosRankSum=-0.352;SNPEFF_AMINO_ACID_CHANGE=L157;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31663762_31663893;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIMK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444929    GT:AD:DP:GQ:PL    0/1:38,34:72:99:1047,0,1193
22    31669267    rs2040532    A    G    34.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIMK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331728    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:66,6,0
22    31672676    rs59315359    G    A    34.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.9;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIMK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482270    GT:AD:DP:GQ:PL    0/1:3,2:5:64.51:65,0,88
22    31672752    rs5997933    A    C    170.41    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.24;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.5784;MQ=55.21;MQ0=0;MQRankSum=0.465;QD=8.52;ReadPosRankSum=1.141;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=LIMK2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482270    GT:AD:DP:GQ:PL    0/1:12,8:20:99:200,0,298
22    31679110    rs2040533    G    C    148.89    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.71;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.065;QD=10.64;ReadPosRankSum=0.065;SNPEFF_AMINO_ACID_CHANGE=T172S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31678926_31679274;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3IP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000487265    GT:AD:DP:GQ:PL    0/1:8,6:14:99:179,0,243
22    31685458    rs5753543    G    A    320.96    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=0.462;DB;DP=25;Dels=0.0;FS=4.222;HRun=1;HaplotypeScore=1.7552;MQ=60.0;MQ0=0;MQRankSum=-0.517;QD=12.84;ReadPosRankSum=1.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443175    GT:AD:DP:GQ:PL    0/1:13,12:25:99:351,0,401
22    31687313    rs4820044    A    G    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIK3IP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215912    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
22    31724972    rs79811132    CA    C    203.29    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=11;FS=0.0;HRun=2;HaplotypeScore=37.3943;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-1.58;QD=18.48;ReadPosRankSum=-0.546;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266269    GT:AD:DP:GQ:PL    0/1:4,7:11:99:242,0,103
22    31737436    rs62236170    G    A    542.42    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.01;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.14;MQ0=0;MQRankSum=2.394;QD=10.04;ReadPosRankSum=-1.141;SNPEFF_AMINO_ACID_CHANGE=T523;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31736663_31737669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATZ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215919    GT:AD:DP:GQ:PL    0/1:30,24:54:99:572,0,754
22    31741067    rs714909    G    A    891.41    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=3.152;DB;DP=65;Dels=0.0;FS=5.78;HRun=3;HaplotypeScore=0.8667;MQ=59.0;MQ0=0;MQRankSum=1.875;QD=13.71;ReadPosRankSum=0.046;SNPEFF_AMINO_ACID_CHANGE=L174;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31740318_31741762;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PATZ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215919    GT:AD:DP:GQ:PL    0/1:35,30:65:99:921,0,1076
22    31795866    rs4820047    T    C    243.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=30.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331457    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:277,21,0
22    31819212    rs5753609    A    G    619.21    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.162;DB;DP=36;Dels=0.0;FS=4.274;HRun=1;HaplotypeScore=0.9665;MQ=55.16;MQ0=0;MQRankSum=-0.366;QD=17.2;ReadPosRankSum=1.353;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331457    GT:AD:DP:GQ:PL    0/1:16,20:36:99:649,0,461
22    31836378    rs4820972    G    T    48.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4ENIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418321    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
22    31839151    rs16989617    T    C    497.41    PASS    AB=0.273;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.438;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=0.848;QD=22.61;ReadPosRankSum=-1.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4ENIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418321    GT:AD:DP:GQ:PL    0/1:6,16:22:99:527,0,177
22    31840379    rs16989623    A    G    112    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=14.0;ReadPosRankSum=0.322;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4ENIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418321    GT:AD:DP:GQ:PL    0/1:3,5:8:99:142,0,100
22    31843567    rs2273251    G    C    137.38    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.601;DB;DP=19;Dels=0.0;FS=4.713;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-1.115;QD=7.23;ReadPosRankSum=0.372;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,8:19:99:167,0,366
22    31844293    rs738658    A    C    157.32    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.047;QD=8.74;ReadPosRankSum=-0.702;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,6:18:99:187,0,415
22    31845149    rs13057504    A    G    60.71    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=12.14;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF4ENIF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420671    GT:AD:DP:GQ:PL    0/1:1,4:5:29.20:91,0,29
22    31854434    rs11293411    AT    A    727.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=6;HaplotypeScore=59.0565;IndelType=D;MQ=61.34;MQ0=0;QD=30.3;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,24:24:72.18:769,72,0
22    31904170    rs2413054    A    G    416.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.86;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DRG1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:449,33,0
22    31946282    rs16989753    T    C    400.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.059;DB;DP=32;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.64;QD=12.5;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=Y140;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31946240_31946334;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000421060    GT:AD:DP:GQ:PL    0/1:16,16:32:99:430,0,379
22    31957167    rs16989278    A    G    42.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=10.61;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400288    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:72,0,70
22    31969249    .    T    TC    398.49    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.014;DP=21;FS=0.0;HRun=1;HaplotypeScore=47.6943;IndelType=I;MQ=54.82;MQ0=0;MQRankSum=-0.124;QD=18.98;ReadPosRankSum=-1.032;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400288    GT:AD:DP:GQ:PL    0/1:10,11:21:99:438,0,255
22    31971172    rs10657905    A    ATCT    1114.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=0;HaplotypeScore=52.815;IndelType=I;MQ=51.19;MQ0=0;QD=65.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400288    GT:AD:DP:GQ:PL    1/1:0,17:17:51.18:1157,51,0
22    31971258    rs5753700    T    C    234.72    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.368;DB;DP=25;Dels=0.0;FS=6.402;HRun=0;HaplotypeScore=1.9726;MQ=52.88;MQ0=0;MQRankSum=-1.047;QD=9.39;ReadPosRankSum=0.934;SNPEFF_AMINO_ACID_CHANGE=Y169H;SNPEFF_CODON_CHANGE=Tac/Cac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31971217_31971378;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000414585    GT:AD:DP:GQ:PL    0/1:16,9:25:99:265,0,449
22    31976299    rs55894054    T    C    602.02    PASS    AB=0.415;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=41;Dels=0.0;FS=6.983;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.231;QD=14.68;ReadPosRankSum=2.271;SNPEFF_AMINO_ACID_CHANGE=A14;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_31976258_31976350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000417682    GT:AD:DP:GQ:PL    0/1:17,24:41:99:632,0,527
22    31998808    rs62237819    A    C    442.09    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=1.122;DB;DP=25;Dels=0.0;FS=5.409;HRun=1;HaplotypeScore=0.5784;MQ=59.07;MQ0=0;MQRankSum=-0.411;QD=17.68;ReadPosRankSum=-0.027;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400288    GT:AD:DP:GQ:PL    0/1:11,14:25:99:472,0,304
22    32002294    rs5753723    T    C    905.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400288    GT:AD:DP:GQ:PL    1/1:0,30:30:72.22:939,72,0
22    32007153    rs9621295    G    A    457.24    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.766;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.182;QD=12.36;ReadPosRankSum=0.875;SNPEFF_AMINO_ACID_CHANGE=R343H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32007129_32007289;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417682    GT:AD:DP:GQ:PL    0/1:18,19:37:99:487,0,477
22    32011225    rs12171042    T    C    73.28    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=53.73;MQ0=0;MQRankSum=0.231;QD=5.23;ReadPosRankSum=0.077;SNPEFF_AMINO_ACID_CHANGE=L1005P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32011034_32011265;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SFI1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400289    GT:AD:DP:GQ:PL    0/1:10,4:14:99:103,0,291
22    32012658    rs45594940    A    G    460.93    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.462;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=0.79;QD=10.72;ReadPosRankSum=-0.352;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PISD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266095    GT:AD:DP:GQ:PL    0/1:22,21:43:99:491,0,675
22    32017296    rs61249659    A    G    647.01    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.085;DB;DP=54;Dels=0.0;FS=11.612;HRun=1;HaplotypeScore=1.367;MQ=57.3;MQ0=0;MQRankSum=2.18;QD=11.98;ReadPosRankSum=0.085;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PISD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429683    GT:AD:DP:GQ:PL    0/1:28,26:54:99:677,0,623
22    32044166    rs34103525    C    T    739.27    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.617;DB;DP=49;Dels=0.0;FS=6.611;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=1.811;QD=15.09;ReadPosRankSum=0.424;SNPEFF_AMINO_ACID_CHANGE=R81Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32044087_32044262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PISD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000336566    GT:AD:DP:GQ:PL    0/1:23,26:49:99:769,0,543
22    32058269    rs16989379    G    A    664.42    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.598;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-0.379;QD=16.21;ReadPosRankSum=-0.135;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PISD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336566    GT:AD:DP:GQ:PL    0/1:20,21:41:99:694,0,601
22    32081436    rs33960159    CAA    C    298.33    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=1.651;DB;DP=46;FS=0.0;HRun=16;HaplotypeScore=268.5366;IndelType=D;MQ=54.71;MQ0=0;MQRankSum=1.602;QD=6.49;ReadPosRankSum=1.137;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397493    GT:AD:DP:GQ:PL    0/1:24,15:46:99:337,0,589
22    32081681    rs8142355    C    T    1149.66    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=4.283;DB;DP=79;Dels=0.0;FS=4.85;HRun=0;HaplotypeScore=0.9983;MQ=59.42;MQ0=0;MQRankSum=1.29;QD=14.55;ReadPosRankSum=-0.996;SNPEFF_AMINO_ACID_CHANGE=P2096;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32077333_32081789;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:38,41:79:99:1180,0,1015
22    32084334    rs11089522    A    C    82.59    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=9.18;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:5,4:9:99:113,0,176
22    32100550    rs5998098    C    T    122.09    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.381;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.83;MQ0=0;MQRankSum=0.533;QD=9.39;ReadPosRankSum=0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:8,5:13:99:152,0,286
22    32108475    rs16989427    C    T    659.75    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=2.958;DB;DP=38;Dels=0.0;FS=1.41;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;MQRankSum=0.322;QD=17.36;ReadPosRankSum=1.364;SNPEFF_AMINO_ACID_CHANGE=V1784I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32108069_32113277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:16,22:38:99:690,0,490
22    32108824    rs131224    T    A    1959.97    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.203;DB;DP=116;Dels=0.0;FS=0.742;HRun=0;HaplotypeScore=0.9332;MQ=59.8;MQ0=0;MQRankSum=-0.688;QD=16.9;ReadPosRankSum=0.366;SNPEFF_AMINO_ACID_CHANGE=T1667;SNPEFF_CODON_CHANGE=acA/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32108069_32113277;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:55,61:116:99:1990,0,1599
22    32110163    rs140078    G    A    1963.75    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=5.108;DB;DP=122;Dels=0.0;FS=1.43;HRun=1;HaplotypeScore=2.3336;MQ=59.81;MQ0=0;MQRankSum=1.436;QD=16.1;ReadPosRankSum=0.96;SNPEFF_AMINO_ACID_CHANGE=S1221L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32108069_32113277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:62,60:122:99:1994,0,1899
22    32110943    rs140079    G    A    1416.66    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.113;DB;DP=88;Dels=0.0;FS=5.481;HRun=0;HaplotypeScore=0.0;MQ=59.74;MQ0=0;MQRankSum=-0.214;QD=16.1;ReadPosRankSum=-1.831;SNPEFF_AMINO_ACID_CHANGE=T961I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32108069_32113277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:40,48:88:99:1447,0,1283
22    32112461    rs140081    T    C    1618.71    PASS    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.467;DB;DP=125;Dels=0.0;FS=1.475;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-1.556;QD=12.95;ReadPosRankSum=1.801;SNPEFF_AMINO_ACID_CHANGE=N455S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32108069_32113277;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:72,53:125:99:1649,0,2196
22    32134214    rs62240515    A    C    234.72    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.532;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.64;MQ0=0;MQRankSum=-0.718;QD=11.74;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR14L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327423    GT:AD:DP:GQ:PL    0/1:10,10:20:99:265,0,323
22    32179850    rs138286    G    C    2124.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=39.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266091    GT:AD:DP:GQ:PL    1/1:0,54:54:99:2158,156,0
22    32198862    rs5998133    C    T    291.02    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.302;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.255;QD=10.39;ReadPosRankSum=-1.694;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469974    GT:AD:DP:GQ:PL    0/1:16,12:28:99:321,0,554
22    32205632    rs5998135    A    C    374.32    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.755;DB;DP=35;Dels=0.0;FS=3.093;HRun=1;HaplotypeScore=0.0;MQ=58.67;MQ0=0;MQRankSum=0.189;QD=10.69;ReadPosRankSum=0.378;SNPEFF_AMINO_ACID_CHANGE=T413;SNPEFF_CODON_CHANGE=acA/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32205597_32205633;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536766    GT:AD:DP:GQ:PL    0/1:18,17:35:99:404,0,573
22    32222476    rs17761491    C    G    2133.62    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.169;DB;DP=160;Dels=0.0;FS=1.24;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.97;QD=13.34;ReadPosRankSum=-1.156;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266091    GT:AD:DP:GQ:PL    0/1:83,77:160:99:2164,0,2443
22    32229977    rs55645350    G    A    2407.64    PASS    AB=0.494;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.939;DB;DP=158;Dels=0.0;FS=0.731;HRun=0;HaplotypeScore=0.5784;MQ=59.68;MQ0=0;MQRankSum=0.241;QD=15.24;ReadPosRankSum=-0.177;SNPEFF_AMINO_ACID_CHANGE=G621;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32229901_32230243;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536766    GT:AD:DP:GQ:PL    0/1:78,80:158:99:2438,0,2396
22    32266546    rs5994441    A    T    299.73    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.56;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.082;QD=11.99;ReadPosRankSum=-0.575;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266091    GT:AD:DP:GQ:PL    0/1:14,11:25:99:330,0,445
22    32271932    rs5994442    C    T    43.44    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=14.48;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494060    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:73,0,33
22    32301770    rs62238935    G    A    117.39    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=23.48;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DEPDC5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266091    GT:AD:DP:GQ:PL    0/1:1,4:5:25.60:147,0,26
22    32343377    .    G    A    614.49    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.791;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-0.345;QD=19.82;ReadPosRankSum=-0.507;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248975    GT:AD:DP:GQ:PL    0/1:12,19:31:99:644,0,390
22    32343613    rs10631788    G    GCTCT    358.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=19.6219;IndelType=I;MQ=47.12;MQ0=0;QD=59.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248975    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:400,15,0
22    32346468    rs4820059    G    A    1452.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248975    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1485,108,0
22    32352791    rs1049583    G    A    209.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=YWHAH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420430    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
22    32482321    rs5998233    T    G    599.69    PASS    AB=0.569;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.28;DB;DP=58;Dels=0.0;FS=6.524;HRun=0;HaplotypeScore=1.7465;MQ=59.2;MQ0=0;MQRankSum=0.009;QD=10.34;ReadPosRankSum=-0.438;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000486394    GT:AD:DP:GQ:PL    0/1:33,25:58:99:630,0,1097
22    32498326    .    A    G    105.07    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.369;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.377;QD=8.08;ReadPosRankSum=-1.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477969    GT:AD:DP:GQ:PL    0/1:7,6:13:99:135,0,242
22    32545849    rs58570639    C    CA    342.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=1;HaplotypeScore=20.635;IndelType=I;MQ=20.59;MQ0=1;QD=16.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    1/1:0,21:9:24.08:384,24,0
22    32546126    rs76993883    C    T    79.12    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=11.3;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    0/1:2,5:7:68.41:109,0,68
22    32546946    rs2019949    C    T    288.34    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=21;Dels=0.0;FS=2.318;HRun=0;HaplotypeScore=0.0;MQ=49.05;MQ0=0;MQRankSum=-0.528;QD=13.73;ReadPosRankSum=-1.091;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    0/1:10,11:21:99:318,0,294
22    32547012    rs3888536    G    A    371.14    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.109;DB;DP=42;Dels=0.02;FS=5.014;HRun=1;HaplotypeScore=0.9665;MQ=51.53;MQ0=1;MQRankSum=-2.955;QD=8.63;ReadPosRankSum=0.711;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    0/1:24,18:42:99:401,0,801
22    32547086    rs2019952    C    T    292.88    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.197;DB;DP=34;Dels=0.0;FS=8.858;HRun=1;HaplotypeScore=0.9159;MQ=48.0;MQ0=1;MQRankSum=-4.477;QD=8.61;ReadPosRankSum=1.971;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    0/1:20,14:34:99:323,0,574
22    32547626    rs5998254    T    C    90.13    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.2;DB;DP=16;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=55.6;MQ0=0;MQRankSum=0.163;QD=5.63;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    0/1:10,6:16:99:120,0,350
22    32547983    rs67223520    AC    A    410.63    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=3.325;DB;DP=18;FS=0.0;HRun=1;HaplotypeScore=42.0904;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=-2.201;QD=22.81;ReadPosRankSum=0.234;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    0/1:6,12:18:99:450,0,234
22    32554860    rs8141332    G    A    501.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.826;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.34;MQ0=0;MQRankSum=0.551;QD=14.33;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    0/1:17,17:35:99:531,0,582
22    32554985    rs5998267    A    G    1939.16    PASS    AB=0.447;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.531;DB;DP=133;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.9032;MQ=60.0;MQ0=0;MQRankSum=0.168;QD=14.58;ReadPosRankSum=-0.87;SNPEFF_AMINO_ACID_CHANGE=L73P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32554971_32555275;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf42;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382097    GT:AD:DP:GQ:PL    0/1:59,73:133:99:1969,0,1785
22    32579249    rs136426    A    G    53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.5;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
22    32579290    rs136427    A    G    74.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.78;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
22    32579550    rs136428    T    C    1072.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9916;MQ=58.3;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1106,81,0
22    32579559    rs136429    A    G    1193.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.95;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1227,90,0
22    32579676    rs136430    A    G    641.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:674,51,0
22    32579742    rs1297809    C    T    107.77    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=13.47;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,4:8:99:138,0,138
22    32579751    rs136431    C    G    259.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.01;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:292,21,0
22    32586632    rs136466    C    T    694.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.44;MQ0=0;QD=38.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489846    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:728,54,0
22    32586854    rs136467    C    T    1397    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=26.57;MQ0=2;QD=25.4;SNPEFF_AMINO_ACID_CHANGE=V258I;SNPEFF_CODON_CHANGE=Gtt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32586422_32587339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248983    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1430,129,0
22    32586875    rs136468    G    A    1006.81    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.07;MQ0=3;QD=22.37;SNPEFF_AMINO_ACID_CHANGE=R251C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32586422_32587339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248983    GT:AD:DP:GQ:PL    1/1:0,45:45:96.22:1040,96,0
22    32586878    rs136469    A    G    924.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.65;MQ0=3;QD=22.54;SNPEFF_AMINO_ACID_CHANGE=L250;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32586422_32587339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248983    GT:AD:DP:GQ:PL    1/1:0,41:41:87.23:957,87,0
22    32586926    rs136470    T    C    856.73    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.84;MQ0=4;QD=19.47;SNPEFF_AMINO_ACID_CHANGE=S234G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32586422_32587339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248983    GT:AD:DP:GQ:PL    1/1:0,44:44:81.17:890,81,0
22    32587023    rs55974778    C    G    815.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6405;MQ=37.39;MQ0=2;QD=23.98;SNPEFF_AMINO_ACID_CHANGE=T201;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32586422_32587339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248983    GT:AD:DP:GQ:PL    1/1:0,34:34:78.14:848,78,0
22    32587027    rs136472    G    C    956.35    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.6405;MQ=39.23;MQ0=2;QD=25.85;SNPEFF_AMINO_ACID_CHANGE=T200S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32586422_32587339;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248983    GT:AD:DP:GQ:PL    1/1:0,37:37:84.16:989,84,0
22    32587478    rs136473    T    C    175.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248980    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
22    32589023    rs136478    C    T    2375.59    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.512;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.36;MQ0=0;MQRankSum=0.805;QD=33.46;ReadPosRankSum=-1.293;SNPEFF_AMINO_ACID_CHANGE=C141Y;SNPEFF_CODON_CHANGE=tGc/tAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32588889_32589179;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400237    GT:AD:DP:GQ:PL    1/1:1,70:71:99:2409,149,0
22    32589034    rs136479    T    C    2287.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DB;DP=64;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.74;MQ0=0;MQRankSum=-0.168;QD=35.75;ReadPosRankSum=-0.279;SNPEFF_AMINO_ACID_CHANGE=L137;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32588889_32589179;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400237    GT:AD:DP:GQ:PL    1/1:1,63:64:99:2321,145,0
22    32589090    rs8135276    C    T    451.86    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=0.822;DB;DP=43;Dels=0.0;FS=9.476;HRun=0;HaplotypeScore=0.0;MQ=51.69;MQ0=0;MQRankSum=-1.369;QD=10.51;ReadPosRankSum=0.039;SNPEFF_AMINO_ACID_CHANGE=A119T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32588889_32589179;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400237    GT:AD:DP:GQ:PL    0/1:21,22:43:99:482,0,617
22    32590133    rs125964    G    A    128.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248983    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:161,12,0
22    32590449    rs108211    G    A    1250.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_AMINO_ACID_CHANGE=R50C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32590332_32590477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000400237    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1283,102,0
22    32590522    rs136484    T    C    676.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248983    GT:AD:DP:GQ:PL    1/1:0,20:20:54.14:709,54,0
22    32617062    rs5998317    G    A    872.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266086    GT:AD:DP:GQ:PL    1/1:0,27:27:66.22:905,66,0
22    32621469    rs2294207    G    A    40.38    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=10.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266086    GT:AD:DP:GQ:PL    0/1:2,2:4:53.81:70,0,54
22    32621619    rs2294208    C    T    1224.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=7;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266086    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1257,99,0
22    32626908    rs2068209    G    A    586.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC5A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266086    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:620,45,0
22    32754386    rs9621427    C    A    1447.61    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.019;DB;DP=127;Dels=0.0;FS=4.574;HRun=0;HaplotypeScore=4.4566;MQ=59.04;MQ0=0;MQRankSum=1.515;QD=11.4;ReadPosRankSum=-1.146;SNPEFF_AMINO_ACID_CHANGE=L110M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32753854_32754431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249007    GT:AD:DP:GQ:PL    0/1:73,54:127:99:1478,0,1946
22    32756652    .    A    G    56.84    QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.251;DP=110;Dels=0.0;FS=1.212;HRun=1;HaplotypeScore=0.734;MQ=49.64;MQ0=5;MQRankSum=-6.024;QD=0.52;ReadPosRankSum=-0.098;SNPEFF_AMINO_ACID_CHANGE=S234G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32756239_32757148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382088    GT:AD:DP:GQ:PL    0/1:85,25:110:86.83:87,0,2879
22    32756684    rs61729165    C    A    163.56    QDFilter2    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=107;Dels=0.0;FS=13.483;HRun=0;HaplotypeScore=2.8729;MQ=52.39;MQ0=4;MQRankSum=-6.952;QD=1.53;ReadPosRankSum=1.97;SNPEFF_AMINO_ACID_CHANGE=V244;SNPEFF_CODON_CHANGE=gtC/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32756239_32757148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382088    GT:AD:DP:GQ:PL    0/1:81,26:107:99:194,0,2810
22    32756703    rs73166367    C    T    429.52    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.022;DB;DP=122;Dels=0.0;FS=14.348;HRun=0;HaplotypeScore=0.8941;MQ=52.72;MQ0=3;MQRankSum=-7.648;QD=3.52;ReadPosRankSum=0.034;SNPEFF_AMINO_ACID_CHANGE=R251C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32756239_32757148;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382088    GT:AD:DP:GQ:PL    0/1:88,34:122:99:460,0,2872
22    32756744    rs2076035    A    G    2757.30    PASS    AB=0.19;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.391;DB;DP=121;Dels=0.0;FS=4.524;HRun=2;HaplotypeScore=0.9916;MQ=55.46;MQ0=0;MQRankSum=6.186;QD=22.6;ReadPosRankSum=-1.516;SNPEFF_AMINO_ACID_CHANGE=Q264;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32756239_32757148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382088    GT:AD:DP:GQ:PL    0/1:23,98:121:99:2787,0,416
22    32756970    rs55744002    G    A    116.48    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.41;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382086    GT:AD:DP:GQ:PL    0/1:2,4:6:66.18:146,0,66
22    32758843    rs11913841    T    C    103.71    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=2.223;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=-0.635;QD=4.32;ReadPosRankSum=-1.207;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249007    GT:AD:DP:GQ:PL    0/1:17,7:24:99:134,0,567
22    32759025    rs5998440    G    C    2477.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.4;MQ0=0;QD=32.18;SNPEFF_AMINO_ACID_CHANGE=L49V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32758788_32759045;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382086    GT:AD:DP:GQ:PL    1/1:0,76:77:99:2511,193,0
22    32763595    rs5998455    T    C    498.18    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;MQRankSum=0.25;QD=19.93;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382084    GT:AD:DP:GQ:PL    0/1:10,15:25:99:528,0,339
22    32763635    rs34534838    C    CT    530.81    PASS    AB=0.653;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.284;DB;DP=47;FS=1.496;HRun=11;HaplotypeScore=200.5651;IndelType=I;MQ=57.98;MQ0=0;MQRankSum=1.911;QD=11.29;ReadPosRankSum=-1.045;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382084    GT:AD:DP:GQ:PL    0/1:20,25:47:99:570,0,218
22    32763787    rs738267    T    C    647.71    PASS    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.84;DB;DP=39;Dels=0.0;FS=2.541;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-1.585;QD=16.61;ReadPosRankSum=1.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382084    GT:AD:DP:GQ:PL    0/1:16,23:39:99:678,0,542
22    32763829    rs713647    A    G    320.93    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.735;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=-2.164;QD=16.89;ReadPosRankSum=-0.122;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382084    GT:AD:DP:GQ:PL    0/1:9,10:19:99:351,0,296
22    32764388    rs5998456    T    C    130.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382084    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
22    32764720    rs5998458    G    C    79.71    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.94;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382084    GT:AD:DP:GQ:PL    0/1:2,3:5:66.19:110,0,66
22    32766764    rs7284302    C    A    116.45    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.64;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382084    GT:AD:DP:GQ:PL    0/1:3,4:7:99:146,0,105
22    32766985    rs73166382    C    G    467.56    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.332;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.633;QD=14.17;ReadPosRankSum=2.621;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_32766886_32767063;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RFPL3-AS1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400234    GT:AD:DP:GQ:PL    0/1:18,15:33:99:498,0,595
22    32788028    rs16990376    C    T    36.17    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.06;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216038    GT:AD:DP:GQ:PL    0/1:1,2:3:33.62:66,0,34
22    32788076    rs5994562    T    A    312.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216038    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:345,27,0
22    32790972    rs56101849    G    A    380.59    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=2.933;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8995;MQ=58.95;MQ0=0;MQRankSum=0.833;QD=17.3;ReadPosRankSum=0.109;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476619    GT:AD:DP:GQ:PL    0/1:8,14:22:99:411,0,203
22    32790981    rs9680823    C    G    379.39    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.031;DB;DP=24;Dels=0.0;FS=1.918;HRun=0;HaplotypeScore=0.9665;MQ=59.03;MQ0=0;MQRankSum=-1.543;QD=15.81;ReadPosRankSum=0.094;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476619    GT:AD:DP:GQ:PL    0/1:10,14:24:99:409,0,246
22    32791003    rs2072818    A    C    831.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=29.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476619    GT:AD:DP:GQ:PL    1/1:0,28:28:66.19:865,66,0
22    32791929    rs67901881    GC    G    2579.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;FS=0.0;HRun=7;HaplotypeScore=247.3742;IndelType=D;MQ=54.48;MQ0=0;QD=29.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476619    GT:AD:DP:GQ:PL    1/1:2,86:88:99:2621,259,0
22    32792442    rs742097    T    G    81.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476619    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
22    32795641    rs5749426    C    T    2434.08    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=3.367;DB;DP=166;Dels=0.0;FS=1.29;HRun=1;HaplotypeScore=2.6978;MQ=60.0;MQ0=0;MQRankSum=0.706;QD=14.66;ReadPosRankSum=0.232;SNPEFF_AMINO_ACID_CHANGE=Q201;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32795590_32795746;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216038    GT:AD:DP:GQ:PL    0/1:78,87:166:99:2464,0,2460
22    32797475    rs76956700    A    G    45.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487704    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
22    32802603    rs41304681    C    G    764.44    PASS    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.521;DB;DP=48;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.61;MQ0=0;MQRankSum=-1.075;QD=15.93;ReadPosRankSum=-0.316;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463455    GT:AD:DP:GQ:PL    0/1:19,29:48:99:794,0,628
22    32804313    rs5754073    G    A    176.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216038    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
22    32804656    rs2076043    G    A    360.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216038    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:393,30,0
22    32804665    rs2076044    T    C    187.91    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.741;QD=18.79;ReadPosRankSum=-1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf28;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216038    GT:AD:DP:GQ:PL    0/1:4,6:10:99:218,0,134
22    32811952    rs5998478    A    G    478.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.17;SNPEFF_AMINO_ACID_CHANGE=S175P;SNPEFF_CODON_CHANGE=Tcc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32811902_32811978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000534972    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:511,39,0
22    32813176    rs71798922    CT    C    90.28    QDFilter2    AB=0.778;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.967;DB;DP=70;FS=0.0;HRun=17;HaplotypeScore=577.3577;IndelType=D;MQ=51.46;MQ0=0;MQRankSum=1.753;QD=1.29;ReadPosRankSum=4.052;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300399    GT:AD:DP:GQ:PL    0/1:44,16:70:99:129,0,306
22    32828343    rs9609551    T    C    1004.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300399    GT:AD:DP:GQ:PL    1/1:0,31:31:75.25:1038,75,0
22    32831711    rs5994570    C    G    461.10    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.431;DB;DP=34;Dels=0.0;FS=3.093;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.155;QD=13.56;ReadPosRankSum=-1.604;SNPEFF_AMINO_ACID_CHANGE=V116L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32831691_32831867;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000432451    GT:AD:DP:GQ:PL    0/1:16,18:34:99:491,0,532
22    32841503    rs2076032    G    A    524.33    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=3.876;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=56.18;MQ0=0;MQRankSum=0.838;QD=14.17;ReadPosRankSum=1.123;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300399    GT:AD:DP:GQ:PL    0/1:19,18:37:99:554,0,467
22    32841698    .    AT    A    61.91    QDFilter2    AB=0.898;AC=1;AF=0.50;AN=2;BaseQRankSum=2.938;DP=79;FS=31.069;HRun=1;HaplotypeScore=682.3097;IndelType=D;MQ=50.24;MQ0=0;MQRankSum=-1.185;QD=0.78;ReadPosRankSum=-2.445;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300399    GT:AD:DP:GQ:PL    0/1:70,6:79:99:101,0,1417
22    32843436    rs4821063    C    T    138.62    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.666;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.762;QD=15.4;ReadPosRankSum=-1.179;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300399    GT:AD:DP:GQ:PL    0/1:2,7:9:59.50:169,0,59
22    32853508    rs73170361    T    C    130.21    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.133;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.133;QD=13.02;ReadPosRankSum=-2.072;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BPIFC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000397450    GT:AD:DP:GQ:PL    0/1:4,6:10:99:160,0,139
22    32871227    rs8136485    C    T    39.73    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=9.93;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266087    GT:AD:DP:GQ:PL    0/1:2,2:4:69.73:70,0,70
22    32871383    rs8137714    T    G    175.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.779;DB;DP=12;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=14.64;ReadPosRankSum=1.073;SNPEFF_AMINO_ACID_CHANGE=L12R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32871224_32871385;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO7;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000382058    GT:AD:DP:GQ:PL    0/1:6,6:12:99:206,0,154
22    32871442    rs8140067    C    A    105.34    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=0.817;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.271;QD=8.1;ReadPosRankSum=-1.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266087    GT:AD:DP:GQ:PL    0/1:8,5:13:99:135,0,219
22    32875190    rs11107    G    A    899.44    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.192;DB;DP=59;Dels=0.0;FS=11.17;HRun=0;HaplotypeScore=0.8321;MQ=59.22;MQ0=0;MQRankSum=1.645;QD=15.24;ReadPosRankSum=0.705;SNPEFF_AMINO_ACID_CHANGE=M1I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=START_LOST;SNPEFF_EXON_ID=exon_22_32874968_32875262;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO7;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000397426    GT:AD:DP:GQ:PL    0/1:30,29:59:99:929,0,936
22    32880006    rs41311141    A    G    699.13    PASS    AB=0.621;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.648;DB;DP=66;Dels=0.0;FS=4.94;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=-0.132;QD=10.59;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=P101;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32879884_32880111;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000382058    GT:AD:DP:GQ:PL    0/1:41,25:66:99:729,0,1352
22    32886998    rs738982    T    C    198.77    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.405;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.637;QD=13.25;ReadPosRankSum=0.868;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266087    GT:AD:DP:GQ:PL    0/1:8,7:15:99:229,0,284
22    32887150    rs9726    C    T    449.55    PASS    AB=0.559;AC=1;AF=0.50;AN=2;BaseQRankSum=1.804;DB;DP=34;Dels=0.0;FS=1.565;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.283;QD=13.22;ReadPosRankSum=-1.353;SNPEFF_AMINO_ACID_CHANGE=L203;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_32887073_32887168;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397426    GT:AD:DP:GQ:PL    0/1:19,15:34:99:480,0,538
22    32894025    rs77881174    T    G    224.33    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.675;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=1.457;QD=10.68;ReadPosRankSum=1.173;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBXO7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266087    GT:AD:DP:GQ:PL    0/1:12,9:21:99:254,0,411
22    32934225    rs2239765    C    A    135.87    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.67;QD=10.45;ReadPosRankSum=1.381;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332840    GT:AD:DP:GQ:PL    0/1:8,5:13:99:166,0,239
22    32934274    rs2239766    T    G    168.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332840    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:201,15,0
22    32937401    rs2213407    A    G    34.03    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.34;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332840    GT:AD:DP:GQ:PL    0/1:1,2:3:32.73:64,0,33
22    32937740    rs135479    T    C    263.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332840    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:297,24,0
22    33253280    rs9862    T    C    1347.21    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=1.561;DB;DP=76;Dels=0.0;FS=10.02;HRun=0;HaplotypeScore=1.81;MQ=58.84;MQ0=0;MQRankSum=0.663;QD=17.73;ReadPosRankSum=-0.005;SNPEFF_AMINO_ACID_CHANGE=H17;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_33253236_33253347;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TIMP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538671    GT:AD:DP:GQ:PL    0/1:28,48:76:99:1377,0,888
22    33777684    rs16992221    G    A    141.71    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=23.62;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARGE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337431    GT:AD:DP:GQ:PL    0/1:1,5:6:24.59:172,0,25
22    33828068    rs16992336    A    C    69.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.406;QD=11.51;ReadPosRankSum=0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARGE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337431    GT:AD:DP:GQ:PL    0/1:3,3:6:99:99,0,108
22    33960676    rs713795    A    G    127.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARGE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337431    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
22    34022284    rs86487    G    A    1003.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_AMINO_ACID_CHANGE=A145;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_34022228_34022310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LARGE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337431    GT:AD:DP:GQ:PL    1/1:0,30:30:75.25:1037,75,0
22    35463162    rs361863    A    G    145.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.676;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=1.268;QD=14.59;ReadPosRankSum=0.47;SNPEFF_AMINO_ACID_CHANGE=S28G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_35462129_35463309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308700    GT:AD:DP:GQ:PL    0/1:5,5:10:99:176,0,139
22    35463179    rs361668    T    C    53.16    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=7.59;ReadPosRankSum=-1.3;SNPEFF_AMINO_ACID_CHANGE=I33;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_35462129_35463309;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308700    GT:AD:DP:GQ:PL    0/1:3,4:7:83.15:83,0,105
22    35463225    rs61739193    C    T    116.01    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.38;QD=19.34;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=P49S;SNPEFF_CODON_CHANGE=Cca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_35462129_35463309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308700    GT:AD:DP:GQ:PL    0/1:2,4:6:65.82:146,0,66
22    35463249    rs362090    C    T    75.60    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=18.9;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=P57S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_35462129_35463309;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308700    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:106,0,30
22    35478486    rs2899241    A    C    2730.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=32.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308700    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2763,208,0
22    35478688    rs725267    C    T    270.23    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.323;DB;DP=20;Dels=0.0;FS=9.294;HRun=0;HaplotypeScore=1.6498;MQ=58.84;MQ0=0;MQRankSum=0.718;QD=13.51;ReadPosRankSum=0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308700    GT:AD:DP:GQ:PL    0/1:10,10:20:99:300,0,241
22    35481776    rs3810619    T    C    842.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ISX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308700    GT:AD:DP:GQ:PL    1/1:0,23:23:66.22:875,66,0
22    35726280    rs145024189    A    G    163.03    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.992;DB;DP=21;Dels=0.0;FS=2.75;HRun=0;HaplotypeScore=0.9665;MQ=57.77;MQ0=0;MQRankSum=0.905;QD=7.76;ReadPosRankSum=0.833;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439512    GT:AD:DP:GQ:PL    0/1:13,8:21:99:193,0,388
22    35741820    rs133398    G    A    210.13    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.537;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.702;QD=10.01;ReadPosRankSum=0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382034    GT:AD:DP:GQ:PL    0/1:13,8:21:99:240,0,348
22    35741863    rs133399    A    G    295.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382034    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:328,24,0
22    35742925    rs743810    T    G    886.75    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=2.108;DB;DP=70;Dels=0.0;FS=10.6;HRun=3;HaplotypeScore=0.9987;MQ=60.0;MQ0=0;MQRankSum=1.291;QD=12.67;ReadPosRankSum=1.808;SNPEFF_AMINO_ACID_CHANGE=G166;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_35742923_35742962;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412456    GT:AD:DP:GQ:PL    0/1:36,34:70:99:917,0,1093
22    35743124    rs2071745    G    C    602.02    PASS    AB=0.594;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=69;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=1.289;QD=8.72;ReadPosRankSum=0.69;SNPEFF_AMINO_ACID_CHANGE=G204;SNPEFF_CODON_CHANGE=ggG/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_35743048_35743979;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412456    GT:AD:DP:GQ:PL    0/1:41,28:69:99:632,0,1172
22    35797333    rs743815    T    C    983.13    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.918;DB;DP=83;Dels=0.0;FS=1.812;HRun=1;HaplotypeScore=1.9887;MQ=60.0;MQ0=0;MQRankSum=0.692;QD=11.84;ReadPosRankSum=-1.022;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216122    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1013,0,1585
22    35799542    rs713618    C    T    536.96    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=4.046;DB;DP=34;Dels=0.0;FS=2.062;HRun=1;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.475;QD=15.79;ReadPosRankSum=-0.779;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451351    GT:AD:DP:GQ:PL    0/1:16,18:34:99:567,0,352
22    35799611    rs713873    G    A    90.84    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=12.98;ReadPosRankSum=1.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCM5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451351    GT:AD:DP:GQ:PL    0/1:3,4:7:98.61:121,0,99
22    35947585    rs41279993    C    A    542.95    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=3.211;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=60.0;MQ0=0;MQRankSum=-0.394;QD=9.87;ReadPosRankSum=0.149;SNPEFF_AMINO_ACID_CHANGE=R103;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_35947550_35950048;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RASD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216127    GT:AD:DP:GQ:PL    0/1:35,20:55:99:573,0,1004
22    36006923    rs35171458    G    GC    542.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=26.5421;IndelType=I;MQ=56.35;MQ0=0;QD=41.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419229    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:584,39,0
22    36054572    rs35675903    C    T    257.72    PASS    AB=0.308;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.003;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3574;MQ=60.0;MQ0=0;MQRankSum=1.466;QD=19.82;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000409652    GT:AD:DP:GQ:PL    0/1:4,9:13:99:288,0,128
22    36113815    rs3075240    G    GGA    347.25    PASS    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.183;DB;DP=19;FS=0.0;HRun=0;HaplotypeScore=229.9593;IndelType=I;MQ=41.28;MQ0=0;MQRankSum=0.296;QD=18.28;ReadPosRankSum=-0.887;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    0/1:10,5:19:40.14:386,0,40
22    36114047    rs4821438    C    T    731.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.78;MQ0=0;QD=33.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:765,60,0
22    36114054    rs2899256    C    T    743.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.45;MQ0=0;QD=37.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    1/1:0,20:20:60.15:776,60,0
22    36116535    rs33921037    A    G    43.76    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.929;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.44;MQ0=0;MQRankSum=-2.18;QD=3.37;ReadPosRankSum=-1.239;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    0/1:8,4:13:73.75:74,0,263
22    36122517    rs17723764    T    C    1160.08    PASS    AB=0.408;AC=1;AF=0.50;AN=2;BaseQRankSum=0.965;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.74;MQ0=0;MQRankSum=0.596;QD=16.11;ReadPosRankSum=1.174;SNPEFF_AMINO_ACID_CHANGE=L134;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36122258_36123241;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    0/1:29,42:72:99:1190,0,882
22    36122930    rs2076671    C    T    1305.91    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=3.975;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9066;MQ=60.0;MQ0=0;MQRankSum=0.192;QD=13.06;ReadPosRankSum=0.698;SNPEFF_AMINO_ACID_CHANGE=T272M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36122258_36123241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    0/1:54,45:99:99:1336,0,1509
22    36123083    rs2076672    C    T    983.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_AMINO_ACID_CHANGE=T323M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36122258_36123241;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    1/1:0,27:27:75.25:1016,75,0
22    36123313    rs2073198    G    A    392.75    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=0.57;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.921;QD=20.67;ReadPosRankSum=0.395;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    0/1:6,13:19:99:423,0,150
22    36124860    rs2076673    C    G    718.45    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.827;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.44;MQ0=0;MQRankSum=0.69;QD=17.52;ReadPosRankSum=1.61;SNPEFF_AMINO_ACID_CHANGE=S406C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36124770_36124951;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249044    GT:AD:DP:GQ:PL    0/1:15,26:41:99:748,0,472
22    36537893    rs3827346    A    G    481.32    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.239;DB;DP=41;Dels=0.0;FS=10.843;HRun=0;HaplotypeScore=1.8136;MQ=60.0;MQ0=0;MQRankSum=0.848;QD=11.46;ReadPosRankSum=-0.743;SNPEFF_AMINO_ACID_CHANGE=N117;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36536372_36538106;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397293    GT:AD:DP:GQ:PL    0/1:21,20:41:99:511,0,655
22    36541825    rs132628    C    T    154.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349314    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
22    36545137    rs132642    A    T    1536.05    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=2.747;DB;DP=84;Dels=0.0;FS=2.191;HRun=1;HaplotypeScore=0.9665;MQ=59.5;MQ0=0;MQRankSum=-0.647;QD=18.29;ReadPosRankSum=0.581;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_36545094_36545190;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397293    GT:AD:DP:GQ:PL    0/1:36,48:84:99:1566,0,983
22    36556823    rs132653    G    T    647.95    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.423;DB;DP=44;Dels=0.0;FS=6.59;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=-0.085;QD=14.73;ReadPosRankSum=0.231;SNPEFF_AMINO_ACID_CHANGE=S39R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36556717_36556977;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000349314    GT:AD:DP:GQ:PL    0/1:21,23:44:99:678,0,628
22    36556964    rs916334    C    T    275.29    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.521;DB;DP=24;Dels=0.0;FS=2.246;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.29;QD=11.47;ReadPosRankSum=0.927;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361710    GT:AD:DP:GQ:PL    0/1:13,11:24:99:305,0,343
22    36587202    rs6000172    G    A    931.63    PASS    AB=0.515;AC=1;AF=0.50;AN=2;BaseQRankSum=4.317;DB;DP=66;Dels=0.0;FS=3.305;HRun=1;HaplotypeScore=2.8318;MQ=58.99;MQ0=0;MQRankSum=-1.674;QD=14.12;ReadPosRankSum=-0.635;SNPEFF_AMINO_ACID_CHANGE=S322L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36587123_36587845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332987    GT:AD:DP:GQ:PL    0/1:34,32:66:99:962,0,938
22    36587223    rs6000173    G    T    782.21    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=0.062;DB;DP=59;Dels=0.0;FS=3.54;HRun=4;HaplotypeScore=2.3336;MQ=58.57;MQ0=0;MQRankSum=-0.249;QD=13.26;ReadPosRankSum=1.648;SNPEFF_AMINO_ACID_CHANGE=A315E;SNPEFF_CODON_CHANGE=gCa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36587123_36587845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332987    GT:AD:DP:GQ:PL    0/1:30,29:59:99:812,0,1013
22    36587279    rs6000174    A    G    581.34    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.747;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=57.84;MQ0=0;MQRankSum=0.11;QD=10.97;ReadPosRankSum=-0.183;SNPEFF_AMINO_ACID_CHANGE=L296;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36587123_36587845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332987    GT:AD:DP:GQ:PL    0/1:25,28:53:99:611,0,819
22    36587486    rs2227167    A    G    1159.61    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.694;DB;DP=95;Dels=0.0;FS=2.738;HRun=1;HaplotypeScore=1.2434;MQ=59.56;MQ0=0;MQRankSum=-1.443;QD=12.21;ReadPosRankSum=0.356;SNPEFF_AMINO_ACID_CHANGE=S227;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36587123_36587845;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332987    GT:AD:DP:GQ:PL    0/1:53,42:95:99:1190,0,1825
22    36587511    rs2227168    C    T    1073.25    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.089;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=59.55;MQ0=0;MQRankSum=0.297;QD=11.54;ReadPosRankSum=-0.702;SNPEFF_AMINO_ACID_CHANGE=R219H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36587123_36587845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000332987    GT:AD:DP:GQ:PL    0/1:54,39:93:99:1103,0,1411
22    36587845    rs5845253    A    ACT    4931.66    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-10.025;DB;DP=221;FS=4.691;HRun=0;HaplotypeScore=631.8403;IndelType=I;MQ=60.23;MQ0=0;MQRankSum=0.357;QD=22.32;ReadPosRankSum=-1.872;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_22_36585177_36587958;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000404685    GT:AD:DP:GQ:PL    0/1:121,98:221:99:4932,0,4445
22    36587952    rs2227169    C    T    1493.71    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.795;DB;DP=117;Dels=0.0;FS=1.829;HRun=1;HaplotypeScore=0.0;MQ=59.8;MQ0=0;MQRankSum=0.518;QD=12.77;ReadPosRankSum=0.749;SNPEFF_AMINO_ACID_CHANGE=E72;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36587847_36587958;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332987    GT:AD:DP:GQ:PL    0/1:65,52:117:99:1524,0,2030
22    36588112    rs2097466    C    T    102.28    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.74;MQ0=0;MQRankSum=-0.361;QD=11.36;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419360    GT:AD:DP:GQ:PL    0/1:4,5:9:99:132,0,113
22    36588127    rs2097467    T    C    71.91    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.09;MQ0=0;MQRankSum=-1.537;QD=11.99;ReadPosRankSum=0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419360    GT:AD:DP:GQ:PL    0/1:3,3:6:99:102,0,101
22    36591380    rs2007468    A    G    1268.47    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.349;DB;DP=99;Dels=0.0;FS=5.358;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.409;QD=12.81;ReadPosRankSum=-0.143;SNPEFF_AMINO_ACID_CHANGE=F62;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36591357_36591483;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332987    GT:AD:DP:GQ:PL    0/1:49,50:99:99:1298,0,1429
22    36595244    rs132712    A    G    184.94    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.407;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=58.99;MQ0=0;MQRankSum=0.824;QD=8.04;ReadPosRankSum=-2.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436763    GT:AD:DP:GQ:PL    0/1:13,10:23:99:215,0,386
22    36595254    rs132713    G    A    334.45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=3.001;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.17;MQ0=0;MQRankSum=-0.512;QD=11.94;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436763    GT:AD:DP:GQ:PL    0/1:16,12:28:99:364,0,413
22    36597877    rs132734    G    A    115.44    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.699;DB;DP=16;Dels=0.0;FS=2.158;HRun=1;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.359;QD=7.22;ReadPosRankSum=0.566;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_36597746_36597923;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493203    GT:AD:DP:GQ:PL    0/1:11,5:16:99:145,0,373
22    36597881    rs132735    G    T    105.12    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=2.266;DB;DP=17;Dels=0.0;FS=2.271;HRun=1;HaplotypeScore=0.0;MQ=57.23;MQ0=0;MQRankSum=0.158;QD=6.18;ReadPosRankSum=0.369;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_36597746_36597923;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000493203    GT:AD:DP:GQ:PL    0/1:12,5:17:99:135,0,374
22    36598049    rs80587    C    G    921.54    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.727;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=59.82;MQ0=0;MQRankSum=-0.908;QD=13.36;ReadPosRankSum=1.125;SNPEFF_AMINO_ACID_CHANGE=V12L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36598039_36598101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352371    GT:AD:DP:GQ:PL    0/1:37,32:69:99:952,0,1142
22    36598058    rs132736    T    C    926.05    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.395;DB;DP=70;Dels=0.0;FS=0.925;HRun=0;HaplotypeScore=0.0;MQ=59.82;MQ0=0;MQRankSum=-1.244;QD=13.23;ReadPosRankSum=1.586;SNPEFF_AMINO_ACID_CHANGE=I9V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36598039_36598101;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000352371    GT:AD:DP:GQ:PL    0/1:38,32:70:99:956,0,1170
22    36598187    rs132737    G    C    457.28    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.385;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.623;QD=12.36;ReadPosRankSum=-2.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328429    GT:AD:DP:GQ:PL    0/1:19,18:37:99:487,0,617
22    36623731    rs132760    T    C    3369.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.03;SNPEFF_AMINO_ACID_CHANGE=I245V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36622256_36624326;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249066    GT:AD:DP:GQ:PL    1/1:0,99:99:99:3369,250,0
22    36624461    rs5995263    T    A    184.02    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.43;MQ0=0;QD=16.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249066    GT:AD:DP:GQ:PL    1/1:0,11:11:23.99:217,24,0
22    36624462    rs142500826    T    G    184.97    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.43;MQ0=0;QD=16.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249066    GT:AD:DP:GQ:PL    1/1:0,11:11:23.99:218,24,0
22    36624467    rs5995264    A    T    262.34    SnpCluster    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=26.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249066    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:295,24,0
22    36624501    rs9610460    G    C    52.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249066    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
22    36628907    rs2010467    T    C    45.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473549    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
22    36628993    rs2003813    C    T    507.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473549    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:541,39,0
22    36629466    rs2010499    T    A    219.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=24.35;SNPEFF_AMINO_ACID_CHANGE=E80V;SNPEFF_CODON_CHANGE=gAa/gTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36629448_36629501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451256    GT:AD:DP:GQ:PL    1/1:1,8:9:18.06:252,18,0
22    36650956    rs9610468    G    A    1701.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=32.11;SNPEFF_AMINO_ACID_CHANGE=L14;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36650944_36651045;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000438034    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1735,135,0
22    36657474    rs136162    A    G    36.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=7.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475519    GT:AD:DP:GQ:PL    1/1:0,5:5:6.02:67,6,0
22    36657596    rs713929    A    G    607.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.65;MQ0=0;QD=25.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475519    GT:AD:DP:GQ:PL    1/1:0,24:24:57.06:640,57,0
22    36657628    rs136163    T    G    896.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.19;MQ0=0;QD=28.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475519    GT:AD:DP:GQ:PL    1/1:0,31:31:75.19:929,75,0
22    36657789    rs136164    T    C    442.61    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=0.297;DB;DP=44;Dels=0.0;FS=1.372;HRun=2;HaplotypeScore=1.8737;MQ=58.3;MQ0=0;MQRankSum=0.269;QD=10.06;ReadPosRankSum=-0.637;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422471    GT:AD:DP:GQ:PL    0/1:23,21:44:99:473,0,655
22    36661061    rs28391521    A    G    316.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=35.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422471    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:350,27,0
22    36661149    rs76406801    A    G    683.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=29.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422471    GT:AD:DP:GQ:PL    1/1:0,23:23:60.15:716,60,0
22    36661152    rs28480494    G    A    775.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422471    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:809,60,0
22    36661330    rs2239785    G    A    2842.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.72;MQ0=0;QD=35.09;SNPEFF_AMINO_ACID_CHANGE=E132K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36661197_36663576;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000426053    GT:AD:DP:GQ:PL    1/1:0,81:81:99:2876,220,0
22    36661536    rs136174    C    A    3305.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=A200;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36661197_36663576;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000426053    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3305,244,0
22    36661566    rs136175    G    A    1917.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3639;MQ=60.0;MQ0=0;QD=33.06;SNPEFF_AMINO_ACID_CHANGE=M107I;SNPEFF_CODON_CHANGE=atG/atA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36661197_36662207;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347595    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1950,141,0
22    36661646    rs136176    G    A    1866.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.63;MQ0=0;QD=30.1;SNPEFF_AMINO_ACID_CHANGE=R134K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36661197_36662207;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000347595    GT:AD:DP:GQ:PL    1/1:0,62:62:99:1899,156,0
22    36661842    rs136177    G    A    2441.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.12;MQ0=0;QD=30.91;SNPEFF_AMINO_ACID_CHANGE=R199;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36661197_36662207;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOL1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347595    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2475,187,0
22    36682707    rs13053731    G    A    2249.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7333;MQ=59.1;MQ0=0;QD=31.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2282,169,0
22    36684092    rs5756129    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
22    36684354    rs2269529    T    C    911.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.62;SNPEFF_AMINO_ACID_CHANGE=I1048V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36684298_36684459;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337818    GT:AD:DP:GQ:PL    1/1:0,33:33:75.20:945,75,0
22    36684358    rs2269530    C    A    1056.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_AMINO_ACID_CHANGE=A1046;SNPEFF_CODON_CHANGE=gcG/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36684298_36684459;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000337818    GT:AD:DP:GQ:PL    1/1:0,32:32:81.25:1089,81,0
22    36690026    rs2071730    G    C    222.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459960    GT:AD:DP:GQ:PL    1/1:0,8:8:21.03:255,21,0
22    36691447    rs71322998    G    GGT    101.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=18.3561;IndelType=I;MQ=60.0;MQ0=0;QD=16.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459960    GT:AD:DP:GQ:PL    1/1:1,5:6:9.03:143,9,0
22    36691607    rs710181    A    C    494.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.48;SNPEFF_AMINO_ACID_CHANGE=A1143;SNPEFF_CODON_CHANGE=gcT/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36691551_36691763;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,18:18:39.13:528,39,0
22    36695173    rs2187776    C    T    932.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.14;MQ0=0;QD=34.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473022    GT:AD:DP:GQ:PL    1/1:0,27:27:72.24:965,72,0
22    36695247    rs4821480    G    T    309.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000473022    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:343,27,0
22    36705041    rs2239781    C    T    111.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:144,12,0
22    36705052    rs1009151    C    G    134.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
22    36705104    rs2239782    G    A    79.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
22    36705128    rs2239783    C    T    51.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
22    36705529    rs1557529    A    G    1388.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1422,102,0
22    36708049    rs3842715    CTCCTGTGA    C    1540.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=0;HaplotypeScore=205.3703;IndelType=D;MQ=35.94;MQ0=0;QD=85.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477189    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:1583,54,0
22    36708084    rs2413396    C    T    1192.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.46;MQ0=0;QD=29.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477189    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1226,102,0
22    36710045    rs3752461    C    T    156.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477189    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:189,15,0
22    36712472    rs5756152    A    G    1596.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=26.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463027    GT:AD:DP:GQ:PL    1/1:1,58:59:99:1629,138,0
22    36714089    rs1557539    C    G    572    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463027    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:605,48,0
22    36716202    rs3833922    C    CT    743.19    PASS    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=3.167;DB;DP=25;FS=0.0;HRun=0;HaplotypeScore=117.0554;IndelType=I;MQ=60.43;MQ0=0;MQRankSum=0.3;QD=29.73;ReadPosRankSum=0.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401701    GT:AD:DP:GQ:PL    0/1:7,18:25:99:782,0,179
22    36716209    rs3752463    G    A    593.24    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=3.058;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7825;MQ=60.42;MQ0=0;MQRankSum=-1.427;QD=22.82;ReadPosRankSum=1.777;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401701    GT:AD:DP:GQ:PL    0/1:9,17:26:99:623,0,173
22    36722490    rs8136069    C    A    74.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.537;QD=12.38;ReadPosRankSum=-0.988;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    0/1:3,3:6:99:104,0,108
22    36722534    rs8136336    G    A    731.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:765,57,0
22    36723697    rs5756157    T    G    35.86    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.96;ReadPosRankSum=1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MYH9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216181    GT:AD:DP:GQ:PL    0/1:2,2:4:65.85:66,0,69
22    36872750    rs2281082    T    G    4399.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.7;MQ0=0;QD=32.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216185    GT:AD:DP:GQ:PL    1/1:0,136:137:99:4399,328,0
22    36891786    rs5756218    G    C    805.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXRED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216187    GT:AD:DP:GQ:PL    1/1:0,23:23:63.20:838,63,0
22    36891858    rs5756219    C    A    1520.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXRED2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216187    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1553,114,0
22    36900271    rs2277841    T    C    1169.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=34.39;SNPEFF_AMINO_ACID_CHANGE=N308S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36900145_36900414;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXRED2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216187    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1202,90,0
22    36900806    rs760718    A    G    863.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_AMINO_ACID_CHANGE=F179L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_36900562_36900813;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXRED2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216187    GT:AD:DP:GQ:PL    1/1:0,28:28:72.21:897,72,0
22    36907098    rs728785    T    C    462.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=28.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426531    GT:AD:DP:GQ:PL    1/1:0,16:16:42.11:496,42,0
22    36922262    rs76328101    A    G    109.26    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.956;QD=13.66;ReadPosRankSum=-1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216190    GT:AD:DP:GQ:PL    0/1:3,5:8:99:139,0,104
22    36933283    rs8140727    T    C    374.78    PASS    AB=0.316;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.515;QD=19.73;ReadPosRankSum=1.264;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1119A7.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339367    GT:AD:DP:GQ:PL    0/1:6,13:19:99:405,0,197
22    36933668    rs2142824    G    A    541.43    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.509;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.534;QD=19.34;ReadPosRankSum=0.116;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP5-1119A7.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339367    GT:AD:DP:GQ:PL    0/1:12,16:28:99:571,0,418
22    36962353    rs2267338    C    G    377.75    PASS    AB=0.689;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.723;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.55;MQ0=0;MQRankSum=0.012;QD=8.39;ReadPosRankSum=1.042;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300105    GT:AD:DP:GQ:PL    0/1:31,14:45:99:408,0,952
22    36983404    rs2235681    C    G    109.44    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.123;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.674;QD=7.3;ReadPosRankSum=1.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300105    GT:AD:DP:GQ:PL    0/1:10,5:15:99:139,0,377
22    36983428    rs2235682    G    A    362.91    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.875;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.875;QD=12.96;ReadPosRankSum=-0.737;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300105    GT:AD:DP:GQ:PL    0/1:15,13:28:99:393,0,532
22    37159819    rs739002    T    C    67.35    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.3;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=9.62;ReadPosRankSum=1.754;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430701    GT:AD:DP:GQ:PL    0/1:4,3:7:93.27:97,0,93
22    37162389    rs75913273    C    T    179.31    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=19.92;ReadPosRankSum=2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465023    GT:AD:DP:GQ:PL    0/1:3,6:9:84.89:209,0,85
22    37163329    rs1048012    C    T    198.68    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=0.985;DB;DP=24;Dels=0.0;FS=1.81;HRun=1;HaplotypeScore=1.9575;MQ=58.24;MQ0=0;MQRankSum=-0.869;QD=8.28;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340630    GT:AD:DP:GQ:PL    0/1:13,11:24:99:229,0,404
22    37163607    rs5756338    T    C    91.48    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=0.278;DB;DP=11;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.278;QD=8.32;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476548    GT:AD:DP:GQ:PL    0/1:7,4:11:99:121,0,245
22    37171611    rs2009667    A    G    211.53    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=2.454;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=51.77;MQ0=0;MQRankSum=0.048;QD=11.75;ReadPosRankSum=-1.107;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IFT27;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340630    GT:AD:DP:GQ:PL    0/1:9,8:18:99:242,0,282
22    37196871    rs3484    G    A    217.40    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=2.799;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=0.222;QD=12.08;ReadPosRankSum=-0.578;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216200    GT:AD:DP:GQ:PL    0/1:10,8:18:99:247,0,234
22    37196971    rs2001063    C    A    187.70    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.395;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.225;QD=9.88;ReadPosRankSum=-1.141;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVALB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216200    GT:AD:DP:GQ:PL    0/1:12,7:19:99:218,0,335
22    37211219    rs74804322    G    A    191.82    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.579;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9532;MQ=58.89;MQ0=0;MQRankSum=-0.193;QD=9.13;ReadPosRankSum=0.964;SNPEFF_AMINO_ACID_CHANGE=A41V;SNPEFF_CODON_CHANGE=gCg/gTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37211147_37211279;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PVALB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216200    GT:AD:DP:GQ:PL    0/1:12,8:21:99:222,0,369
22    37260160    .    A    C    220.19    QDFilter2    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.603;DP=113;Dels=0.0;FS=36.557;HRun=2;HaplotypeScore=1.445;MQ=59.59;MQ0=0;MQRankSum=0.278;QD=1.95;ReadPosRankSum=4.73;SNPEFF_AMINO_ACID_CHANGE=T36P;SNPEFF_CODON_CHANGE=Acc/Ccc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37260087_37260171;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    0/1:41,71:113:99:250,0,1252
22    37263706    rs760519    C    T    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
22    37266322    rs2075938    A    G    364.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    1/1:0,13:13:36.06:398,36,0
22    37267767    rs2072708    A    G    93.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
22    37268257    rs5756374    C    T    97.76    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.141;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.831;QD=8.15;ReadPosRankSum=-0.244;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    0/1:7,5:12:99:128,0,210
22    37268501    rs2072710    A    G    1020.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    1/1:0,28:28:84.26:1054,84,0
22    37268555    rs2072711    A    G    501.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:534,39,0
22    37268713    .    A    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
22    37271802    rs2072712    C    T    1230.49    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.324;DB;DP=77;Dels=0.0;FS=14.637;HRun=0;HaplotypeScore=1.7128;MQ=59.7;MQ0=0;MQRankSum=-0.528;QD=15.98;ReadPosRankSum=0.507;SNPEFF_AMINO_ACID_CHANGE=Y142;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37271695_37271874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000447071    GT:AD:DP:GQ:PL    0/1:35,42:77:99:1260,0,980
22    37271882    rs2075939    T    C    1595.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;QD=29.55;SNPEFF_AMINO_ACID_CHANGE=L272P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37271695_37272136;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397147    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1629,129,0
22    37273742    rs11552115    G    A    272.04    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.773;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.46;QD=12.37;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=S299;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37273670_37274057;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248899    GT:AD:DP:GQ:PL    0/1:11,11:22:99:302,0,350
22    37328751    rs2075936    A    G    304.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421539    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:338,27,0
22    37328966    rs1534879    G    C    915.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=29.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421539    GT:AD:DP:GQ:PL    1/1:0,31:31:72.22:948,72,0
22    37329111    rs1534880    G    C    86.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421539    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
22    37330082    rs2075937    T    C    251.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421539    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:285,21,0
22    37331305    rs2239749    A    G    86.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421539    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
22    37333794    rs131840    A    G    97.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=19.58;SNPEFF_AMINO_ACID_CHANGE=P595;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37333419_37334736;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536485    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:130,12,0
22    37453452    rs710185    C    T    157.99    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.151;DB;DP=17;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-1.156;QD=9.29;ReadPosRankSum=-2.161;SNPEFF_AMINO_ACID_CHANGE=H142;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37453438_37453533;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCTD17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402077    GT:AD:DP:GQ:PL    0/1:11,6:17:99:188,0,375
22    37462926    rs2235321    G    A    375.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.334;DB;DP=28;Dels=0.0;FS=8.916;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.189;QD=13.43;ReadPosRankSum=0.704;SNPEFF_AMINO_ACID_CHANGE=Y730;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37462866_37463002;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406725    GT:AD:DP:GQ:PL    0/1:14,14:28:99:406,0,449
22    37462936    rs855791    A    G    859.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.4;SNPEFF_AMINO_ACID_CHANGE=V727A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37462866_37463002;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406725    GT:AD:DP:GQ:PL    1/1:0,25:25:69.19:893,69,0
22    37464624    rs877908    T    C    608.45    PASS    AB=0.422;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.232;DB;DP=45;Dels=0.0;FS=2.652;HRun=0;HaplotypeScore=1.8991;MQ=59.49;MQ0=0;MQRankSum=-0.047;QD=13.52;ReadPosRankSum=-1.232;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346753    GT:AD:DP:GQ:PL    0/1:19,26:45:99:638,0,590
22    37469591    rs4820268    G    A    2771.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.71;MQ0=0;QD=34.64;SNPEFF_AMINO_ACID_CHANGE=D512;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37469572_37469685;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381792    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2804,208,0
22    37469821    rs13055107    G    A    96.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=12.03;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346753    GT:AD:DP:GQ:PL    0/1:4,4:8:99:126,0,130
22    37470604    rs2072860    G    A    204.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346753    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:237,18,0
22    37470640    rs79816125    G    A    244.89    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=16;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.531;QD=15.31;ReadPosRankSum=0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346753    GT:AD:DP:GQ:PL    0/1:5,10:16:99:275,0,149
22    37471385    rs9610643    G    A    134.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.047;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=1.517;QD=11.22;ReadPosRankSum=-1.191;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346753    GT:AD:DP:GQ:PL    0/1:6,6:12:99:165,0,213
22    37491545    rs2743824    T    C    972.11    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.303;DB;DP=107;Dels=0.0;FS=1.656;HRun=0;HaplotypeScore=2.7803;MQ=57.14;MQ0=0;MQRankSum=0.254;QD=9.09;ReadPosRankSum=-0.787;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423761    GT:AD:DP:GQ:PL    0/1:68,39:107:99:1002,0,2077
22    37491822    rs2543510    G    A    30.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=6.15;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423761    GT:AD:DP:GQ:PL    0/1:2,3:5:54.30:61,0,54
22    37491839    rs2543509    A    G    75.87    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.421;QD=9.48;ReadPosRankSum=0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423761    GT:AD:DP:GQ:PL    0/1:4,4:8:99:106,0,131
22    37492201    rs2743825    T    G    221.03    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=1.398;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.278;QD=20.09;ReadPosRankSum=-0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346753    GT:AD:DP:GQ:PL    0/1:4,7:11:99:251,0,122
22    37499019    rs4140589    G    A    72.07    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;MQRankSum=0.727;QD=18.02;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346753    GT:AD:DP:GQ:PL    0/1:1,3:4:21.40:102,0,21
22    37499386    rs11704654    C    T    780.45    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=1.446;DB;DP=55;Dels=0.0;FS=4.297;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;MQRankSum=1.29;QD=14.19;ReadPosRankSum=0.476;SNPEFF_AMINO_ACID_CHANGE=P24;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37499256_37499458;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381792    GT:AD:DP:GQ:PL    0/1:26,29:55:99:810,0,856
22    37499692    rs5756515    A    G    161.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.71;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.16;MQ0=0;MQRankSum=0.968;QD=10.79;ReadPosRankSum=0.065;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406725    GT:AD:DP:GQ:PL    0/1:9,6:15:99:192,0,242
22    37499699    rs5756516    C    T    84.26    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.09;MQ0=0;MQRankSum=0.103;QD=7.66;ReadPosRankSum=-1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMPRSS6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406725    GT:AD:DP:GQ:PL    0/1:6,5:11:99:114,0,160
22    37528362    rs2072861    T    G    127.21    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.161;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=0.352;QD=7.48;ReadPosRankSum=0.151;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453962    GT:AD:DP:GQ:PL    0/1:11,6:17:99:157,0,384
22    37528576    rs3218318    A    G    88.94    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=1.774;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.6546;MQ=58.33;MQ0=0;MQRankSum=0.386;QD=6.35;ReadPosRankSum=1.774;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453962    GT:AD:DP:GQ:PL    0/1:9,4:14:99:119,0,251
22    37528606    rs2072862    G    A    66.20    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=13.24;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453962    GT:AD:DP:GQ:PL    0/1:2,3:5:60.51:96,0,61
22    37531257    rs34041364    A    AGT    229.22    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=10;FS=0.0;HRun=0;HaplotypeScore=36.9042;IndelType=I;MQ=55.21;MQ0=0;MQRankSum=0.572;QD=22.92;ReadPosRankSum=-0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429622    GT:AD:DP:GQ:PL    0/1:4,6:10:49.14:268,0,49
22    37531436    rs228953    G    A    474.29    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.883;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=56.47;MQ0=0;MQRankSum=-0.183;QD=12.16;ReadPosRankSum=-0.983;SNPEFF_AMINO_ACID_CHANGE=G250;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37531368_37531482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216223    GT:AD:DP:GQ:PL    0/1:16,20:39:99:504,0,453
22    37533786    rs228957    C    G    206.72    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.144;DB;DP=20;Dels=0.0;FS=4.752;HRun=0;HaplotypeScore=0.5784;MQ=57.66;MQ0=0;MQRankSum=-0.529;QD=10.34;ReadPosRankSum=-0.337;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440958    GT:AD:DP:GQ:PL    0/1:9,11:20:99:237,0,288
22    37533795    rs228958    G    C    111.37    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.181;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-0.825;QD=7.42;ReadPosRankSum=-0.387;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL2RB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440958    GT:AD:DP:GQ:PL    0/1:6,9:15:99:141,0,180
22    37581383    rs7290488    C    T    879.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_AMINO_ACID_CHANGE=G55D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37581258_37581495;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C1QTNF6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337843    GT:AD:DP:GQ:PL    1/1:0,24:24:69.22:912,69,0
22    37602583    rs11431949    G    GC    1087.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=3;HaplotypeScore=89.4043;IndelType=I;MQ=60.31;MQ0=0;QD=35.08;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSTR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328544    GT:AD:DP:GQ:PL    1/1:5,26:31:81.27:1130,81,0
22    37622999    rs62235085    C    T    76.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=25.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249071    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:108,9,0
22    37627234    rs9610682    T    C    508.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=26.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469532    GT:AD:DP:GQ:PL    1/1:0,19:19:42.14:541,42,0
22    37627246    rs9610683    G    C    650.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=32.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469532    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:684,54,0
22    37627845    rs8135343    G    A    45.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469532    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
22    37678378    rs3213555    A    G    32.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=8.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457992    GT:AD:DP:GQ:PL    1/1:0,4:4:6.01:64,6,0
22    37678551    rs3213556    A    G    409.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.59;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439667    GT:AD:DP:GQ:PL    1/1:0,16:16:33.08:442,33,0
22    37678565    rs3213557    G    A    450.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=30.07;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469886    GT:AD:DP:GQ:PL    1/1:0,15:15:36.12:484,36,0
22    37691907    rs2269590    A    G    77.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467664    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:109,9,0
22    37695256    rs2301435    T    C    453.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000457992    GT:AD:DP:GQ:PL    1/1:0,17:17:36.12:487,36,0
22    37697311    rs55934788    C    T    34.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.74;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402997    GT:AD:DP:GQ:PL    0/1:2,2:4:64.95:65,0,68
22    37699168    rs5756603    G    A    363.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402997    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:397,30,0
22    37699197    rs35187313    C    CG    614.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.0;HRun=4;HaplotypeScore=100.6703;IndelType=I;MQ=60.0;MQ0=0;QD=38.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402997    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:656,48,0
22    37699377    rs2239822    T    C    1567.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=F210;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37699295_37699443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248901    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1601,129,0
22    37707900    rs3842718    CAG    C    201.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=29.721;IndelType=D;MQ=61.78;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248901    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
22    37707962    rs2269591    C    T    218.91    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.06;MQ0=0;MQRankSum=-0.696;QD=16.84;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248901    GT:AD:DP:GQ:PL    0/1:5,8:13:99:249,0,126
22    37708004    rs2269593    T    C    254.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.061;DB;DP=15;Dels=0.0;FS=2.963;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.919;QD=16.97;ReadPosRankSum=-0.061;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYTH4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248901    GT:AD:DP:GQ:PL    0/1:5,10:15:99:285,0,158
22    37770630    rs2071856    G    A    2723.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7608;MQ=59.23;MQ0=0;QD=32.42;SNPEFF_AMINO_ACID_CHANGE=I315;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37764000_37771579;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELFN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000349653    GT:AD:DP:GQ:PL    1/1:0,84:84:99:2756,211,0
22    37887644    rs113602635    G    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;MQRankSum=-0.727;QD=8.91;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433485    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:67,6,0
22    37888868    rs5756696    G    C    260.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.68;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CARD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433485    GT:AD:DP:GQ:PL    1/1:0,11:11:24.07:293,24,0
22    37962646    rs139353065    G    A    615.28    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.784;DB;DP=37;Dels=0.0;FS=3.654;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.135;QD=16.63;ReadPosRankSum=1.135;SNPEFF_AMINO_ACID_CHANGE=R97Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37962079_37962819;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42EP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249014    GT:AD:DP:GQ:PL    0/1:12,24:37:99:645,0,249
22    37962740    rs111307192    C    T    1504.85    PASS    AB=0.372;AC=1;AF=0.50;AN=2;BaseQRankSum=2.193;DB;DP=87;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.8;QD=17.3;ReadPosRankSum=1.255;SNPEFF_AMINO_ACID_CHANGE=A128;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37962079_37962819;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42EP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249014    GT:AD:DP:GQ:PL    0/1:32,54:87:99:1535,0,838
22    37964299    rs2281098    C    G    457.01    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.143;DB;DP=41;Dels=0.0;FS=4.815;HRun=0;HaplotypeScore=0.0;MQ=54.07;MQ0=0;MQRankSum=-1.468;QD=11.15;ReadPosRankSum=0.176;SNPEFF_AMINO_ACID_CHANGE=L216;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_37964115_37965412;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42EP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249014    GT:AD:DP:GQ:PL    0/1:23,18:41:99:487,0,558
22    37964375    .    GCTGCAAACCCCCCAGCCACTA    G    1196.67    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.474;DP=25;FS=0.0;HRun=0;HaplotypeScore=469.5179;IndelType=D;MQ=43.68;MQ0=0;MQRankSum=0.945;QD=47.87;ReadPosRankSum=1.323;SNPEFF_AMINO_ACID_CHANGE=AANPPATT242A;SNPEFF_CODON_CHANGE=gctgcaaaccccccagccactact/gct;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_22_37964115_37965412;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42EP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000249014    GT:AD:DP:GQ:PL    0/1:15,10:25:99:1236,0,816
22    37964905    rs112061003    G    A    40.20    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.05;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42EP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415670    GT:AD:DP:GQ:PL    0/1:2,2:4:70.20:70,0,73
22    37966060    rs2281097    T    C    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDC42EP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249014    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
22    38010035    rs2294972    A    C    90.82    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.354;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.354;QD=6.49;ReadPosRankSum=-0.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000325180    GT:AD:DP:GQ:PL    0/1:10,4:14:99:121,0,361
22    38015671    rs8138728    T    C    61    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.636;QD=4.36;ReadPosRankSum=0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414350    GT:AD:DP:GQ:PL    0/1:10,4:14:90.99:91,0,323
22    38025375    rs2071766    T    C    221.41    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.367;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=18.45;ReadPosRankSum=0.135;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GGA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475445    GT:AD:DP:GQ:PL    0/1:5,7:12:99:251,0,149
22    38035851    rs13055139    A    G    93.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.68;SNPEFF_AMINO_ACID_CHANGE=G19;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38035684_38035853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336738    GT:AD:DP:GQ:PL    1/1:1,4:5:9.03:125,9,0
22    38039128    rs74516928    A    G    60.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.768;DB;DP=14;Dels=0.0;FS=11.553;HRun=0;HaplotypeScore=0.0;MQ=51.13;MQ0=0;MQRankSum=-1.202;QD=4.34;ReadPosRankSum=0.071;SNPEFF_AMINO_ACID_CHANGE=K140;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38039105_38039181;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336738    GT:AD:DP:GQ:PL    0/1:10,4:14:90.82:91,0,297
22    38039634    rs1894528    C    G    522.41    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.552;DB;DP=44;Dels=0.0;FS=1.259;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=0.91;QD=11.87;ReadPosRankSum=1.415;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336738    GT:AD:DP:GQ:PL    0/1:24,20:44:99:552,0,711
22    38039708    rs1894529    T    C    838.31    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=2.423;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5592;MQ=59.19;MQ0=0;MQRankSum=1.093;QD=14.71;ReadPosRankSum=-1.865;SNPEFF_AMINO_ACID_CHANGE=G177;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38039651_38039795;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336738    GT:AD:DP:GQ:PL    0/1:27,30:57:99:868,0,699
22    38040842    rs713977    C    T    306.89    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.952;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.245;QD=12.28;ReadPosRankSum=1.169;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336738    GT:AD:DP:GQ:PL    0/1:13,12:25:99:337,0,405
22    38041193    rs35001542    G    A    31.80    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=7.95;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459646    GT:AD:DP:GQ:PL    0/1:2,2:4:61.79:62,0,73
22    38041227    rs113198841    C    T    140.39    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=15.6;ReadPosRankSum=-0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459646    GT:AD:DP:GQ:PL    0/1:4,5:9:99:170,0,125
22    38043062    rs78338419    T    A    75.87    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=15.17;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459646    GT:AD:DP:GQ:PL    0/1:1,4:5:29.72:106,0,30
22    38043579    rs12165814    A    G    138.77    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=15.42;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459646    GT:AD:DP:GQ:PL    0/1:3,6:9:99:169,0,102
22    38046718    rs762987    A    G    658.01    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.972;DB;DP=40;Dels=0.0;FS=1.294;HRun=1;HaplotypeScore=0.5784;MQ=58.84;MQ0=0;MQRankSum=-0.155;QD=16.45;ReadPosRankSum=-0.211;SNPEFF_AMINO_ACID_CHANGE=A442;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38046549_38046732;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000397014    GT:AD:DP:GQ:PL    0/1:18,21:40:99:688,0,552
22    38051999    rs12483880    C    T    185.25    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.745;DB;DP=25;Dels=0.0;FS=4.117;HRun=0;HaplotypeScore=0.9789;MQ=59.07;MQ0=0;MQRankSum=-0.092;QD=7.41;ReadPosRankSum=-0.459;SNPEFF_AMINO_ACID_CHANGE=A501V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38051933_38052049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SH3BP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000397014    GT:AD:DP:GQ:PL    0/1:16,8:25:99:215,0,548
22    38071707    rs75882122    A    G    31.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464120    GT:AD:DP:GQ:PL    1/1:0,2:2:5.99:62,6,0
22    38074434    rs9622682    G    A    248.40    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=3.091;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=13.8;ReadPosRankSum=0.883;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464120    GT:AD:DP:GQ:PL    0/1:9,9:18:99:278,0,277
22    38075834    rs41283239    G    A    524.40    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.9436;MQ=58.84;MQ0=0;MQRankSum=0.296;QD=13.11;ReadPosRankSum=-0.437;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LGALS1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215909    GT:AD:DP:GQ:PL    0/1:22,18:40:99:554,0,632
22    38086574    rs9610834    C    T    277.65    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.93;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.775;QD=21.36;ReadPosRankSum=-0.761;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=Z83844.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474032    GT:AD:DP:GQ:PL    0/1:3,10:13:80.53:308,0,81
22    38106225    rs4821690    T    G    79.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:111,9,0
22    38106259    rs4821691    A    T    167.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
22    38119213    rs12628603    G    A    650.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.24;SNPEFF_AMINO_ACID_CHANGE=S217N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:684,51,0
22    38119754    rs112384130    TCAA    T    4525.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=89;FS=0.0;HRun=0;HaplotypeScore=392.7848;IndelType=D;MQ=53.85;MQ0=0;QD=46.18;SNPEFF_AMINO_ACID_CHANGE=Q398-;SNPEFF_CODON_CHANGE=caa/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,98:89:99:4526,262,0
22    38119869    rs75659869    G    A    1303.73    PASS    AB=0.542;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.526;DB;DP=132;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.0664;MQ=42.49;MQ0=3;MQRankSum=0.339;QD=9.88;ReadPosRankSum=0.255;SNPEFF_AMINO_ACID_CHANGE=D436N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    0/1:71,60:132:99:1334,0,1459
22    38120041    rs4821700    G    A    270.20    MQFilter40;QDFilter2    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=3.943;DB;DP=172;Dels=0.0;FS=48.699;HRun=1;HaplotypeScore=5.3775;MQ=23.32;MQ0=32;MQRankSum=-2.36;QD=1.57;ReadPosRankSum=1.581;SNPEFF_AMINO_ACID_CHANGE=S493N;SNPEFF_CODON_CHANGE=aGt/aAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    0/1:124,48:172:99:300,0,1953
22    38120175    rs36219868    GCCT    G    3454.26    PASS    AB=0.693;AC=1;AF=0.50;AN=2;BaseQRankSum=8.066;DB;DP=204;DS;FS=1.813;HRun=0;HaplotypeScore=848.8574;IndelType=D;MQ=44.65;MQ0=3;MQRankSum=4.782;QD=15.63;ReadPosRankSum=1.29;SNPEFF_AMINO_ACID_CHANGE=AS538A;SNPEFF_CODON_CHANGE=gcctcc/gcc;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    0/1:123,98:204:99:3454,0,6193
22    38121152    rs9610841    C    A    4073.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=N863K;SNPEFF_CODON_CHANGE=aaC/aaA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:1,127:128:99:4073,328,0
22    38122122    rs5756795    T    C    1569.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.74;MQ0=0;QD=30.19;SNPEFF_AMINO_ACID_CHANGE=F1187L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1603,123,0
22    38122448    rs739137    C    T    104.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.1;SNPEFF_AMINO_ACID_CHANGE=S1295;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:137,12,0
22    38122462    rs739138    A    G    54    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.0;SNPEFF_AMINO_ACID_CHANGE=H1300R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38119192_38122510;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
22    38129332    rs7284476    G    A    154.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_AMINO_ACID_CHANGE=Q1325;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38129305_38129419;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:187,15,0
22    38130385    rs13054052    A    C    919.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=30.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406386    GT:AD:DP:GQ:PL    1/1:0,30:30:75.24:952,75,0
22    38130472    rs8140958    T    C    1282.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=27.88;SNPEFF_AMINO_ACID_CHANGE=W1338R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38130408_38131449;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000417174    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1315,102,0
22    38146585    rs4821704    C    T    169.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403663    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
22    38146847    rs6519081    T    C    47.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403663    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
22    38155317    rs5756810    C    G    4321.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;QD=35.13;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331103    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4321,325,0
22    38161835    rs34707138    T    TG    131.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=8;HaplotypeScore=11.334;IndelType=I;MQ=60.0;MQ0=0;QD=26.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403663    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:173,15,0
22    38168508    rs762984    T    C    591.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRIOBP;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403663    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:624,48,0
22    38209650    rs56265312    G    A    167.60    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.799;DB;DP=16;Dels=0.0;FS=2.596;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.059;QD=10.48;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415371    GT:AD:DP:GQ:PL    0/1:9,7:16:99:198,0,293
22    38211954    rs2285179    G    A    152.98    PASS    AB=0.632;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.127;DB;DP=19;Dels=0.0;FS=4.523;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.211;QD=8.05;ReadPosRankSum=0.465;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415371    GT:AD:DP:GQ:PL    0/1:12,7:19:99:183,0,369
22    38212068    rs739269    C    T    346.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415371    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:379,30,0
22    38212762    rs13911    A    G    833.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=34.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GCAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415371    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:867,66,0
22    38219252    rs41280041    T    C    179.96    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.214;QD=18.0;ReadPosRankSum=0.296;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249041    GT:AD:DP:GQ:PL    0/1:3,7:10:93.70:210,0,94
22    38220964    rs8138029    T    C    188.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=31.48;SNPEFF_AMINO_ACID_CHANGE=A198;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38220730_38221502;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GALR3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249041    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:222,18,0
22    38243675    rs5750504    A    T    627.40    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.324;DB;DP=51;Dels=0.0;FS=1.186;HRun=0;HaplotypeScore=0.8321;MQ=59.55;MQ0=0;MQRankSum=-1.012;QD=12.3;ReadPosRankSum=0.818;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215941    GT:AD:DP:GQ:PL    0/1:28,23:51:99:657,0,854
22    38245262    rs6000907    C    G    44.07    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.377;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=0.382;QD=3.67;ReadPosRankSum=-0.566;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD54;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215941    GT:AD:DP:GQ:PL    0/1:8,3:12:74.06:74,0,290
22    38245441    .    C    T    1071.51    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=1.762;DP=89;Dels=0.0;FS=4.144;HRun=1;HaplotypeScore=0.0;MQ=58.96;MQ0=0;MQRankSum=0.303;QD=12.04;ReadPosRankSum=-0.61;SNPEFF_AMINO_ACID_CHANGE=L38;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38244875_38245489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000425539    GT:AD:DP:GQ:PL    0/1:49,40:89:99:1102,0,1377
22    38251629    rs11551384    C    G    352.36    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.99;DB;DP=36;Dels=0.0;FS=6.149;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.243;QD=9.79;ReadPosRankSum=-1.444;SNPEFF_AMINO_ACID_CHANGE=A117;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38251572_38251651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262832    GT:AD:DP:GQ:PL    0/1:22,14:36:99:382,0,773
22    38251686    rs2157472    T    C    499.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262832    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:532,45,0
22    38273749    rs9466    T    C    602.46    PASS    AB=0.603;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.885;DB;DP=68;Dels=0.0;FS=0.981;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.663;QD=8.86;ReadPosRankSum=0.83;SNPEFF_AMINO_ACID_CHANGE=I284;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38273681_38274178;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3L;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406934    GT:AD:DP:GQ:PL    0/1:41,27:68:99:632,0,1236
22    38282897    rs17752670    C    T    91.67    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.289;QD=7.64;ReadPosRankSum=0.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF3L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477256    GT:AD:DP:GQ:PL    0/1:8,4:12:99:122,0,219
22    38307909    rs6519091    T    C    342.24    PASS    AB=0.613;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=63;Dels=0.0;FS=1.065;HRun=3;HaplotypeScore=0.734;MQ=58.89;MQ0=0;MQRankSum=-0.973;QD=5.43;ReadPosRankSum=-1.323;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICALL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215957    GT:AD:DP:GQ:PL    0/1:38,24:63:99:372,0,1110
22    38308291    rs1003689    C    T    218.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.536;QD=18.22;ReadPosRankSum=-0.289;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICALL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215957    GT:AD:DP:GQ:PL    0/1:4,8:12:99:249,0,129
22    38323507    rs9610875    G    T    203.82    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=3.17;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.03;QD=9.71;ReadPosRankSum=1.981;SNPEFF_AMINO_ACID_CHANGE=A519S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38323418_38323833;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICALL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000215957    GT:AD:DP:GQ:PL    0/1:13,8:21:99:234,0,356
22    38328597    rs34834842    A    G    400.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.747;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.788;QD=13.35;ReadPosRankSum=-0.124;SNPEFF_AMINO_ACID_CHANGE=H112R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38328560_38328686;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICALL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402631    GT:AD:DP:GQ:PL    0/1:15,15:30:99:430,0,400
22    38329285    rs3026629    G    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICALL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215957    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
22    38341134    rs139859    T    C    902.34    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.529;DB;DP=81;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9997;MQ=59.43;MQ0=0;MQRankSum=-0.361;QD=11.14;ReadPosRankSum=0.621;SNPEFF_AMINO_ACID_CHANGE=T132;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38341049_38341180;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf23;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249079    GT:AD:DP:GQ:PL    0/1:43,38:81:99:932,0,1353
22    38343143    rs139860    T    C    113.27    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.361;QD=12.59;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MICALL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215957    GT:AD:DP:GQ:PL    0/1:4,5:9:99:143,0,133
22    38369976    rs139884    A    G    613.62    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.562;DB;DP=42;Dels=0.0;FS=2.824;HRun=0;HaplotypeScore=1.6006;MQ=59.45;MQ0=0;MQRankSum=0.538;QD=14.61;ReadPosRankSum=0.179;SNPEFF_AMINO_ACID_CHANGE=H309;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38368307_38370205;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SOX10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360880    GT:AD:DP:GQ:PL    0/1:17,25:42:99:644,0,497
22    38453648    rs11408615    A    AG    168.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=3;HaplotypeScore=25.3273;IndelType=I;MQ=37.32;MQ0=0;QD=33.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356976    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:210,15,0
22    38453679    rs78032065    A    AG    346.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=33.4109;IndelType=I;MQ=48.72;MQ0=0;QD=38.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356976    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:389,27,0
22    38463535    rs880669    C    T    40.37    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.09;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469819    GT:AD:DP:GQ:PL    0/1:2,2:4:68.51:70,0,69
22    38463652    rs2076369    T    G    318.56    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.111;DB;DP=31;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.5;MQ0=0;MQRankSum=1.535;QD=10.28;ReadPosRankSum=0.456;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469819    GT:AD:DP:GQ:PL    0/1:16,15:31:99:349,0,355
22    38467784    rs760975    G    C    422.33    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=1.11;DB;DP=27;Dels=0.0;FS=2.049;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.85;QD=15.64;ReadPosRankSum=-1.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PICK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426258    GT:AD:DP:GQ:PL    0/1:11,16:27:99:452,0,368
22    38474696    rs2076371    A    G    600.84    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=2.855;DB;DP=38;Dels=0.0;FS=2.2;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.446;QD=15.81;ReadPosRankSum=0.38;SNPEFF_AMINO_ACID_CHANGE=V405A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38474141_38474711;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC16A8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000320521    GT:AD:DP:GQ:PL    0/1:20,18:38:99:631,0,559
22    38485064    rs62235125    C    G    52.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332536    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:83,6,0
22    38490056    rs4373009    C    T    284.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=2.416;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.355;QD=19.0;ReadPosRankSum=1.002;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332536    GT:AD:DP:GQ:PL    0/1:6,9:15:99:315,0,153
22    38503847    rs6001006    C    T    1532.21    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.071;DB;DP=125;Dels=0.0;FS=3.337;HRun=0;HaplotypeScore=1.8332;MQ=59.45;MQ0=0;MQRankSum=-1.647;QD=12.26;ReadPosRankSum=0.349;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332509    GT:AD:DP:GQ:PL    0/1:65,59:125:99:1562,0,1975
22    38504372    rs5750540    T    C    121.28    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.067;QD=15.16;ReadPosRankSum=0.572;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLA2G6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332509    GT:AD:DP:GQ:PL    0/1:2,6:8:57.31:151,0,57
22    38506509    rs4820313    A    G    274.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.52;SNPEFF_AMINO_ACID_CHANGE=F8;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38506482_38506676;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BAIAP2L2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000332536    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:308,24,0
22    38609950    rs2235264    G    A    1137.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5115;MQ=60.0;MQ0=0;QD=34.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAFF;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338483    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1170,87,0
22    38689984    rs5757022    T    A    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405675    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
22    38694588    rs34093504    T    TG    217.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=2;HaplotypeScore=11.1221;IndelType=I;MQ=60.0;MQ0=0;QD=36.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000430335    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:259,18,0
22    38699050    rs36139855    GAGGC    G    1631.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.0;HRun=0;HaplotypeScore=222.5281;IndelType=D;MQ=52.89;MQ0=0;QD=45.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359867    GT:AD:DP:GQ:PL    1/1:3,33:36:93.32:1674,93,0
22    38759046    rs5757064    G    A    697.13    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.31;MQ0=14;MQRankSum=-6.108;QD=9.3;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400206    GT:AD:DP:GQ:PL    0/1:25,50:75:99:727,0,765
22    38759201    rs142084246    T    C    112.85    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.03;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.34;MQ0=0;MQRankSum=1.981;QD=5.64;ReadPosRankSum=-0.713;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400206    GT:AD:DP:GQ:PL    0/1:13,7:20:99:143,0,391
22    38793330    rs138371    G    GC    632.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=4;HaplotypeScore=110.4872;IndelType=I;MQ=55.02;MQ0=0;QD=37.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSNK1E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400206    GT:AD:DP:GQ:PL    1/1:1,16:17:45.15:674,45,0
22    38822905    rs105153    C    T    685.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.165;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7072;MQ=58.8;MQ0=0;MQRankSum=-0.586;QD=11.82;ReadPosRankSum=-0.311;SNPEFF_AMINO_ACID_CHANGE=A411;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38822332_38824176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303592    GT:AD:DP:GQ:PL    0/1:29,29:58:99:716,0,717
22    38823136    rs196059    T    C    178.44    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=15;Dels=0.0;FS=6.803;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.058;QD=11.9;ReadPosRankSum=1.562;SNPEFF_AMINO_ACID_CHANGE=S334;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38822332_38824176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303592    GT:AD:DP:GQ:PL    0/1:8,7:15:99:208,0,168
22    38823895    rs105154    G    A    223.68    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.683;DB;DP=30;Dels=0.0;FS=1.51;HRun=2;HaplotypeScore=1.9664;MQ=53.51;MQ0=0;MQRankSum=-0.024;QD=7.46;ReadPosRankSum=-1.83;SNPEFF_AMINO_ACID_CHANGE=A81;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38822332_38824176;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000303592    GT:AD:DP:GQ:PL    0/1:17,13:30:99:254,0,471
22    38824304    rs23078    C    T    33.24    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=5.54;ReadPosRankSum=1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCNJ4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303592    GT:AD:DP:GQ:PL    0/1:4,2:6:63.24:63,0,126
22    38875549    rs401933    C    T    1795.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.52;MQ0=0;QD=37.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381633    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1829,132,0
22    38877106    rs138432    C    T    1983.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216019    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2017,175,0
22    38877461    rs12004    T    G    1016.05    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=1.264;DB;DP=66;Dels=0.0;FS=0.927;HRun=1;HaplotypeScore=1.9762;MQ=60.0;MQ0=0;MQRankSum=0.879;QD=15.39;ReadPosRankSum=0.648;SNPEFF_AMINO_ACID_CHANGE=V199G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_38877217_38877469;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDELR3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216014    GT:AD:DP:GQ:PL    0/1:32,34:66:99:1046,0,884
22    38877756    rs138433    C    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216019    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
22    38889657    rs2267390    C    T    424.88    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.519;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=0.589;QD=18.47;ReadPosRankSum=-0.899;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467279    GT:AD:DP:GQ:PL    0/1:10,13:23:99:455,0,344
22    38891984    rs71659852    T    TA    69.99    QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.401;DB;DP=63;FS=0.0;HRun=20;HaplotypeScore=539.3826;IndelType=I;MQ=48.0;MQ0=0;MQRankSum=1.557;QD=1.11;ReadPosRankSum=-0.156;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467279    GT:AD:DP:GQ:PL    0/1:41,13:63:77.86:109,0,78
22    38895521    rs67310010    AAAG    A    1021.97    PASS    AB=0.671;AC=1;AF=0.50;AN=2;BaseQRankSum=4.299;DB;DP=51;FS=0.0;HRun=0;HaplotypeScore=218.6198;IndelType=D;MQ=57.92;MQ0=0;MQRankSum=0.913;QD=20.04;ReadPosRankSum=1.286;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381633    GT:AD:DP:GQ:PL    0/1:26,25:51:99:1061,0,1324
22    38993370    rs5757162    C    T    803.85    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=4.828;DB;DP=57;Dels=0.0;FS=1.242;HRun=0;HaplotypeScore=2.7209;MQ=59.6;MQ0=0;MQRankSum=0.229;QD=14.1;ReadPosRankSum=1.858;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-199H16.5;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000466655    GT:AD:DP:GQ:PL    0/1:31,26:57:99:834,0,844
22    38993467    rs5750633    A    G    284.84    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.646;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;MQRankSum=1.164;QD=17.8;ReadPosRankSum=0.847;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-199H16.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355830    GT:AD:DP:GQ:PL    0/1:7,9:16:99:315,0,213
22    39003495    rs5757169    G    A    730.83    PASS    AB=0.592;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DB;DP=71;Dels=0.0;FS=4.372;HRun=2;HaplotypeScore=0.0;MQ=59.02;MQ0=0;MQRankSum=0.62;QD=10.29;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-199H16.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355830    GT:AD:DP:GQ:PL    0/1:42,29:71:99:761,0,1231
22    39016182    rs4821797    T    C    60.88    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.573;QD=6.76;ReadPosRankSum=2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-199H16.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000543295    GT:AD:DP:GQ:PL    0/1:6,3:9:90.88:91,0,167
22    39024961    rs5995602    G    T    1990.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.02;FS=0.0;HRun=1;HaplotypeScore=2.8995;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-199H16.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355830    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2024,147,0
22    39034867    rs5757193    G    A    442.88    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=39;Dels=0.0;FS=2.191;HRun=1;HaplotypeScore=2.0321;MQ=59.41;MQ0=0;MQRankSum=0.076;QD=11.36;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-199H16.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355830    GT:AD:DP:GQ:PL    0/1:21,18:39:99:473,0,653
22    39046327    rs2205802    T    C    63.64    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=0.358;QD=12.73;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-199H16.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355830    GT:AD:DP:GQ:PL    0/1:2,3:5:29.72:94,0,30
22    39064209    rs2072795    G    A    305.50    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.694;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-0.122;QD=16.08;ReadPosRankSum=-0.776;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216029    GT:AD:DP:GQ:PL    0/1:9,10:19:99:335,0,271
22    39064230    rs2072796    A    G    250.28    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.271;QD=19.25;ReadPosRankSum=-0.817;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216029    GT:AD:DP:GQ:PL    0/1:5,8:13:99:280,0,168
22    39066820    rs3761454    C    T    377.08    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.418;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.033;QD=17.14;ReadPosRankSum=1.154;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475924    GT:AD:DP:GQ:PL    0/1:10,12:22:99:407,0,332
22    39067331    rs3747170    G    A    106.15    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=15.16;ReadPosRankSum=-0.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBY1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411557    GT:AD:DP:GQ:PL    0/1:3,4:7:99:136,0,104
22    39069181    rs3747174    T    C    374.47    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.502;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=0.293;QD=11.01;ReadPosRankSum=0.017;SNPEFF_AMINO_ACID_CHANGE=A107;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39069164_39069859;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=CBY1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216029    GT:AD:DP:GQ:PL    0/1:18,16:34:99:404,0,450
22    39079964    rs5750668    T    C    137.07    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=52.65;MQ0=0;MQRankSum=0.365;QD=13.71;ReadPosRankSum=1.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JOSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216039    GT:AD:DP:GQ:PL    0/1:4,6:10:60.01:167,0,60
22    39095698    rs926299    C    G    208.16    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.762;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.067;QD=23.13;ReadPosRankSum=0.762;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=JOSD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417712    GT:AD:DP:GQ:PL    0/1:2,7:9:54.16:238,0,54
22    39126508    rs909564    A    G    36.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460605    GT:AD:DP:GQ:PL    0/1:1,2:3:32.20:67,0,32
22    39133803    rs138705    C    T    234.54    PASS    AB=0.182;AC=1;AF=0.50;AN=2;BaseQRankSum=1.768;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.354;QD=21.32;ReadPosRankSum=0.589;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTPBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216044    GT:AD:DP:GQ:PL    0/1:2,9:11:38.85:265,0,39
22    39134207    rs2072797    C    T    1268.60    PASS    AB=0.359;AC=1;AF=0.50;AN=2;BaseQRankSum=4.324;DB;DP=64;Dels=0.0;FS=5.56;HRun=0;HaplotypeScore=0.0;MQ=58.98;MQ0=0;MQRankSum=0.322;QD=19.82;ReadPosRankSum=-1.483;SNPEFF_AMINO_ACID_CHANGE=G144S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39133765_39134270;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000455125    GT:AD:DP:GQ:PL    0/1:23,41:64:99:1299,0,603
22    39134715    rs1062687    T    C    357.06    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=0.62;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.334;QD=9.65;ReadPosRankSum=0.461;SNPEFF_AMINO_ACID_CHANGE=Q597;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39134592_39134759;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000411587    GT:AD:DP:GQ:PL    0/1:24,13:37:99:387,0,707
22    39141600    rs138712    G    A    337.91    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=0.288;DB;DP=29;Dels=0.0;FS=2.062;HRun=0;HaplotypeScore=0.734;MQ=59.2;MQ0=0;MQRankSum=0.288;QD=11.65;ReadPosRankSum=0.288;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420859    GT:AD:DP:GQ:PL    0/1:17,12:29:99:368,0,537
22    39146527    rs138716    C    T    125.14    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.244;QD=10.43;ReadPosRankSum=0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417332    GT:AD:DP:GQ:PL    0/1:7,5:12:99:155,0,223
22    39147235    rs35496634    A    C    544.38    PASS    AB=0.406;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.767;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.42;MQ0=0;MQRankSum=-1.496;QD=17.01;ReadPosRankSum=-0.038;SNPEFF_AMINO_ACID_CHANGE=L124R;SNPEFF_CODON_CHANGE=cTg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39147215_39147378;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000411587    GT:AD:DP:GQ:PL    0/1:13,19:32:99:574,0,440
22    39147335    rs137966643    C    G    306.64    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.079;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.983;QD=10.95;ReadPosRankSum=1.75;SNPEFF_AMINO_ACID_CHANGE=A56P;SNPEFF_CODON_CHANGE=Gcg/Ccg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39147215_39147378;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216064    GT:AD:DP:GQ:PL    0/1:18,10:28:99:337,0,539
22    39148483    rs2072798    G    A    427.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.25;DB;DP=36;Dels=0.0;FS=6.863;HRun=1;HaplotypeScore=0.0;MQ=59.36;MQ0=0;MQRankSum=-1.092;QD=11.89;ReadPosRankSum=-0.902;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SUN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216064    GT:AD:DP:GQ:PL    0/1:18,18:36:99:458,0,564
22    39178701    rs760482    A    G    847.35    PASS    AB=0.508;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.602;DB;DP=65;Dels=0.0;FS=2.113;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=0.23;QD=13.04;ReadPosRankSum=-0.938;SNPEFF_AMINO_ACID_CHANGE=D12;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39178668_39178875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216068    GT:AD:DP:GQ:PL    0/1:33,32:65:99:877,0,947
22    39178817    rs149945094    T    A    389.23    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=21;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.9983;MQ=60.0;MQ0=0;MQRankSum=-0.391;QD=18.53;ReadPosRankSum=1.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475512    GT:AD:DP:GQ:PL    0/1:9,12:21:99:419,0,309
22    39222652    rs5757299    G    A    576.04    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.801;DB;DP=39;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-0.436;QD=14.77;ReadPosRankSum=1.082;SNPEFF_AMINO_ACID_CHANGE=Y317;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39222505_39222752;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTXR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000333039    GT:AD:DP:GQ:PL    0/1:20,19:39:99:606,0,656
22    39224248    rs5757300    T    C    194.13    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=2.479;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.485;QD=7.47;ReadPosRankSum=0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NPTXR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333039    GT:AD:DP:GQ:PL    0/1:17,9:26:99:224,0,584
22    39267312    rs1122771    C    T    246.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CBX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216083    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
22    39355717    rs5750717    G    A    270.11    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.903;DB;DP=27;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.805;QD=10.0;ReadPosRankSum=-0.268;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488758    GT:AD:DP:GQ:PL    0/1:15,12:27:99:300,0,457
22    39358037    rs12628403    A    C    481.69    PASS    AB=0.485;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.162;DB;DP=33;Dels=0.0;FS=6.435;HRun=1;HaplotypeScore=0.0;MQ=55.16;MQ0=0;MQRankSum=0.991;QD=14.6;ReadPosRankSum=-0.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488758    GT:AD:DP:GQ:PL    0/1:16,17:33:99:512,0,558
22    39411865    rs2012735    C    T    554.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.7552;MQ=49.76;MQ0=0;QD=20.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361441    GT:AD:DP:GQ:PL    1/1:1,26:27:48.13:588,48,0
22    39413566    rs1969642    G    A    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=17.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361441    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
22    39413668    rs1969643    C    T    927.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.27;MQ0=0;QD=34.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361441    GT:AD:DP:GQ:PL    1/1:0,27:27:72.23:960,72,0
22    39414166    rs4820361    A    G    1468.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.93;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361441    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1501,126,0
22    39414224    rs4821854    A    G    2642.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.79;MQ=59.74;MQ0=0;QD=29.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361441    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2676,235,0
22    39425646    rs11440048    C    CT    112.67    PASS    AB=0.696;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.597;DB;DP=16;FS=0.0;HRun=14;HaplotypeScore=135.9525;IndelType=I;MQ=55.52;MQ0=0;MQRankSum=0.597;QD=7.04;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216099    GT:AD:DP:GQ:PL    0/1:9,7:16:43.68:152,0,44
22    39428396    rs9611081    C    G    918.90    PASS    AB=0.507;AC=1;AF=0.50;AN=2;BaseQRankSum=3.493;DB;DP=69;Dels=0.0;FS=5.891;HRun=1;HaplotypeScore=3.2524;MQ=57.86;MQ0=0;MQRankSum=-1.536;QD=13.32;ReadPosRankSum=-0.056;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3D;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381568    GT:AD:DP:GQ:PL    0/1:35,34:69:99:949,0,1046
22    39440149    rs5750728    C    T    73.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.406;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9894;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.21;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=A78V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39440088_39440428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381565    GT:AD:DP:GQ:PL    0/1:3,3:6:99:103,0,104
22    39441096    rs2020390    G    T    725.98    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.134;DB;DP=91;Dels=0.0;FS=28.915;HRun=0;HaplotypeScore=0.734;MQ=42.16;MQ0=3;MQRankSum=-3.911;QD=7.98;ReadPosRankSum=1.75;SNPEFF_AMINO_ACID_CHANGE=A108S;SNPEFF_CODON_CHANGE=Gct/Tct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39440946_39441225;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308521    GT:AD:DP:GQ:PL    0/1:50,41:91:99:756,0,1219
22    39441203    rs4821862    C    T    1143.09    PASS    AB=0.339;AC=1;AF=0.50;AN=2;BaseQRankSum=3.937;DB;DP=56;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.4106;MQ=49.42;MQ0=0;MQRankSum=-3.166;QD=20.41;ReadPosRankSum=0.404;SNPEFF_AMINO_ACID_CHANGE=R143;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39440946_39441225;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308521    GT:AD:DP:GQ:PL    0/1:19,37:56:99:1173,0,433
22    39445380    rs2014881    G    A    545.82    PASS    AB=0.578;AC=1;AF=0.50;AN=2;BaseQRankSum=4.768;DB;DP=45;Dels=0.0;FS=4.221;HRun=1;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=1.597;QD=12.13;ReadPosRankSum=-0.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381565    GT:AD:DP:GQ:PL    0/1:26,19:45:99:576,0,809
22    39445554    rs2076101    G    A    1733.99    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.396;DB;DP=110;Dels=0.0;FS=3.612;HRun=0;HaplotypeScore=0.0;MQ=59.16;MQ0=0;MQRankSum=0.161;QD=15.76;ReadPosRankSum=-1.365;SNPEFF_AMINO_ACID_CHANGE=V231I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39445430_39445586;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308521    GT:AD:DP:GQ:PL    0/1:50,60:110:99:1764,0,1461
22    39448711    rs6001402    C    A    1533.99    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=4.274;DB;DP=112;Dels=0.0;FS=0.786;HRun=0;HaplotypeScore=1.581;MQ=60.0;MQ0=0;MQRankSum=-0.658;QD=13.7;ReadPosRankSum=0.416;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476513    GT:AD:DP:GQ:PL    0/1:53,59:112:99:1564,0,1510
22    39448750    rs5757451    T    C    1155.17    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.826;DB;DP=82;Dels=0.0;FS=4.056;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.072;QD=14.09;ReadPosRankSum=-0.766;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476513    GT:AD:DP:GQ:PL    0/1:40,42:82:99:1185,0,1207
22    39448875    rs5757452    C    T    71.15    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.652;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=7.91;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=APOBEC3F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476513    GT:AD:DP:GQ:PL    0/1:5,4:9:99:101,0,167
22    39496016    rs139288    A    G    71.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
22    39496085    rs139289    G    A    35.61    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=-1.231;QD=7.12;ReadPosRankSum=0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:3,2:5:65.60:66,0,100
22    39496134    rs139290    G    C    102.38    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;MQRankSum=-0.365;QD=10.24;ReadPosRankSum=-0.365;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:6,4:10:99:132,0,202
22    39496199    rs139291    T    C    392.32    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=58.59;MQ0=0;MQRankSum=0.488;QD=11.89;ReadPosRankSum=1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:18,15:33:99:422,0,564
22    39496322    rs34522862    TAAC    T    1447.11    PASS    AB=0.687;AC=1;AF=0.50;AN=2;BaseQRankSum=7.195;DB;DP=79;FS=1.893;HRun=0;HaplotypeScore=447.1304;IndelType=D;MQ=58.89;MQ0=0;MQRankSum=-0.822;QD=18.32;ReadPosRankSum=-1.564;SNPEFF_AMINO_ACID_CHANGE=N14-;SNPEFF_CODON_CHANGE=aac/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_22_39496277_39496433;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:43,36:79:99:1486,0,2354
22    39496336    rs139293    G    T    853.49    PASS    AB=0.539;AC=1;AF=0.50;AN=2;BaseQRankSum=3.158;DB;DP=76;Dels=0.0;FS=4.556;HRun=0;HaplotypeScore=0.0;MQ=57.84;MQ0=0;MQRankSum=0.219;QD=11.23;ReadPosRankSum=-1.094;SNPEFF_AMINO_ACID_CHANGE=R18L;SNPEFF_CODON_CHANGE=cGc/cTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39496277_39496433;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:41,35:76:99:883,0,1202
22    39496412    rs139294    G    C    662.88    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.414;DB;DP=55;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9973;MQ=57.44;MQ0=0;MQRankSum=0.177;QD=12.05;ReadPosRankSum=-0.245;SNPEFF_AMINO_ACID_CHANGE=T43;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39496277_39496433;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:30,25:55:99:693,0,932
22    39497181    rs9611092    T    A    42.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=14.29;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474235    GT:AD:DP:GQ:PL    0/1:1,2:3:30.29:73,0,30
22    39497404    rs139297    G    C    618.81    PASS    AB=0.463;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.205;DB;DP=54;Dels=0.0;FS=1.174;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.354;QD=11.46;ReadPosRankSum=-0.544;SNPEFF_AMINO_ACID_CHANGE=G105R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39497242_39497509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:25,29:54:99:649,0,694
22    39497452    rs139298    A    G    309.20    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=1.672;DB;DP=40;Dels=0.0;FS=3.706;HRun=1;HaplotypeScore=0.7887;MQ=58.84;MQ0=0;MQRankSum=1.645;QD=7.73;ReadPosRankSum=-0.666;SNPEFF_AMINO_ACID_CHANGE=K121E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39497242_39497509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:22,18:40:99:339,0,666
22    39497454    rs139299    G    C    322.64    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.413;DB;DP=39;Dels=0.0;FS=3.706;HRun=0;HaplotypeScore=0.7887;MQ=58.81;MQ0=0;MQRankSum=0.666;QD=8.27;ReadPosRankSum=-0.411;SNPEFF_AMINO_ACID_CHANGE=K121N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39497242_39497509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:22,17:39:99:353,0,671
22    39497509    rs139300    A    G    989.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=35.33;SNPEFF_AMINO_ACID_CHANGE=K140E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39497242_39497509;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    1/1:0,28:28:81.25:1022,81,0
22    39497811    rs139301    A    G    171.46    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.524;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.85;MQ0=0;MQRankSum=-1.524;QD=11.43;ReadPosRankSum=-2.202;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474235    GT:AD:DP:GQ:PL    0/1:8,7:15:99:201,0,233
22    39498038    rs139302    G    C    234.04    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=0.81;DB;DP=32;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=0.7887;MQ=48.92;MQ0=0;MQRankSum=-0.217;QD=7.31;ReadPosRankSum=-0.257;SNPEFF_AMINO_ACID_CHANGE=E178D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39497923_39498047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000348946    GT:AD:DP:GQ:PL    0/1:17,15:32:99:264,0,326
22    39499575    rs139313    G    T    413.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.769;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9578;MQ=59.17;MQ0=0;MQRankSum=-0.712;QD=14.75;ReadPosRankSum=0.253;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421988    GT:AD:DP:GQ:PL    0/1:14,14:28:99:443,0,493
22    39499604    rs139314    T    C    630.72    PASS    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=3.385;DB;DP=40;Dels=0.0;FS=3.233;HRun=2;HaplotypeScore=0.8667;MQ=59.42;MQ0=0;MQRankSum=0.0;QD=15.77;ReadPosRankSum=0.948;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421988    GT:AD:DP:GQ:PL    0/1:19,21:40:99:661,0,614
22    39499653    rs139315    C    T    1098.62    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.621;DB;DP=77;Dels=0.0;FS=3.436;HRun=0;HaplotypeScore=1.565;MQ=59.4;MQ0=0;MQRankSum=-0.54;QD=14.27;ReadPosRankSum=0.447;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421988    GT:AD:DP:GQ:PL    0/1:39,38:77:99:1129,0,1094
22    39499763    rs139316    T    C    965.46    PASS    AB=0.446;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.89;DB;DP=67;Dels=0.0;FS=4.296;HRun=0;HaplotypeScore=0.8321;MQ=59.66;MQ0=0;MQRankSum=0.512;QD=14.41;ReadPosRankSum=-0.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOBEC3H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421988    GT:AD:DP:GQ:PL    0/1:29,36:67:99:995,0,906
22    39530132    rs139385    C    A    218.30    PASS    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.35;MQ0=0;MQRankSum=1.545;QD=16.79;ReadPosRankSum=0.978;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CBX7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434260    GT:AD:DP:GQ:PL    0/1:5,8:13:99:248,0,153
22    39626375    rs4821874    A    C    142.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331163    GT:AD:DP:GQ:PL    1/1:0,7:7:15.04:175,15,0
22    39636928    rs5757575    A    G    57.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.31;MQ0=0;QD=3.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331163    GT:AD:DP:GQ:PL    1/1:0,15:15:11.94:90,12,0
22    39636944    rs138673005    ACACT    A    274.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=118.7876;IndelType=D;MQ=42.91;MQ0=0;QD=24.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331163    GT:AD:DP:GQ:PL    1/1:5,6:11:23.97:317,24,0
22    39639853    rs1800817    G    T    176.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDGFB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331163    GT:AD:DP:GQ:PL    1/1:0,9:9:18.03:209,18,0
22    39709009    rs2014842    G    A    509.87    PASS    AB=0.387;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.064;DB;DP=31;Dels=0.0;FS=13.08;HRun=0;HaplotypeScore=0.5784;MQ=58.64;MQ0=0;MQRankSum=-0.191;QD=16.45;ReadPosRankSum=0.318;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402527    GT:AD:DP:GQ:PL    0/1:12,19:31:99:540,0,345
22    39711351    rs2076125    A    G    1121.80    PASS    AB=0.506;AC=1;AF=0.50;AN=2;BaseQRankSum=1.544;DB;DP=82;Dels=0.0;FS=4.467;HRun=0;HaplotypeScore=1.9243;MQ=58.06;MQ0=0;MQRankSum=2.143;QD=13.68;ReadPosRankSum=-0.142;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420536    GT:AD:DP:GQ:PL    0/1:41,40:82:99:1152,0,1235
22    39714908    rs137625    A    G    184.93    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.572;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=23.12;ReadPosRankSum=-0.572;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216146    GT:AD:DP:GQ:PL    0/1:2,6:8:58.33:215,0,58
22    39746168    rs3747177    C    A    43.38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.72;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=56.04;MQ0=0;MQRankSum=0.0;QD=7.23;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216155    GT:AD:DP:GQ:PL    0/1:2,4:6:70.42:73,0,70
22    39770597    rs4821888    A    G    490.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.749;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.493;QD=20.44;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNGR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216155    GT:AD:DP:GQ:PL    0/1:8,16:24:99:521,0,206
22    39777822    .    C    CCAA    1085.17    PASS    AB=0.708;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.053;DP=34;FS=3.39;HRun=0;HaplotypeScore=139.0986;IndelType=I;MQ=53.93;MQ0=0;MQRankSum=-1.969;QD=31.92;ReadPosRankSum=0.741;SNPEFF_AMINO_ACID_CHANGE=P202PN;SNPEFF_CODON_CHANGE=ccc/ccCAAc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_22_39777701_39781593;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYNGR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328933    GT:AD:DP:GQ:PL    0/1:20,14:34:99:1124,0,524
22    39823015    rs4821895    A    G    71.26    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.25;ReadPosRankSum=1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAB1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216160    GT:AD:DP:GQ:PL    0/1:2,3:5:64.91:101,0,65
22    39907661    rs738288    G    A    194.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMCR7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434364    GT:AD:DP:GQ:PL    1/1:0,6:6:18.04:228,18,0
22    39913420    rs710192    C    T    74.57    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=10.65;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMCR7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402881    GT:AD:DP:GQ:PL    0/1:4,3:7:99:105,0,146
22    39913557    rs10854722    G    A    122.82    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=20;Dels=0.0;FS=1.922;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.396;QD=6.14;ReadPosRankSum=-0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SMCR7L;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402881    GT:AD:DP:GQ:PL    0/1:13,7:20:99:153,0,394
22    39917515    rs4894    A    C    624.75    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.83;DB;DP=57;Dels=0.0;FS=1.01;HRun=2;HaplotypeScore=1.9305;MQ=55.27;MQ0=0;MQRankSum=1.497;QD=10.96;ReadPosRankSum=-0.822;SNPEFF_AMINO_ACID_CHANGE=Q22P;SNPEFF_CODON_CHANGE=cAg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39916569_39917676;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATF4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000337304    GT:AD:DP:GQ:PL    0/1:30,27:57:99:655,0,867
22    39966856    rs3747178    C    T    209.15    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.312;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.703;QD=5.98;ReadPosRankSum=0.078;SNPEFF_AMINO_ACID_CHANGE=S33;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_39966758_39966982;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336649    GT:AD:DP:GQ:PL    0/1:25,10:35:99:239,0,844
22    39994105    rs760546    A    G    375.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336649    GT:AD:DP:GQ:PL    1/1:0,11:12:33.10:408,33,0
22    40015493    rs12628643    C    T    507.96    PASS    AB=0.15;AC=1;AF=0.50;AN=2;BaseQRankSum=0.741;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=25.4;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336649    GT:AD:DP:GQ:PL    0/1:3,17:20:40.81:538,0,41
22    40030477    rs5757756    C    A    702.11    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.437;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.574;MQ=60.0;MQ0=0;MQRankSum=0.947;QD=14.63;ReadPosRankSum=-0.734;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336649    GT:AD:DP:GQ:PL    0/1:24,24:48:99:732,0,802
22    40054948    rs5757761    T    C    32.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.368;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=-1.368;QD=4.12;ReadPosRankSum=-0.421;SNPEFF_AMINO_ACID_CHANGE=I684;SNPEFF_CODON_CHANGE=atT/atC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_40054936_40055121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000400164    GT:AD:DP:GQ:PL    0/1:4,4:8:62.93:63,0,113
22    40068051    rs4820386    C    T    200.45    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.428;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=0.209;QD=13.36;ReadPosRankSum=0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336649    GT:AD:DP:GQ:PL    0/1:7,8:15:99:230,0,246
22    40068853    rs2235342    T    C    31.93    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.56;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336649    GT:AD:DP:GQ:PL    0/1:5,2:7:61.92:62,0,175
22    40070234    rs714031    T    C    39.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336649    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
22    40073785    rs909680    C    T    39.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1I;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336649    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:69,0,33
22    40364394    rs138009    C    G    121.55    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.851;QD=12.16;ReadPosRankSum=0.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478445    GT:AD:DP:GQ:PL    0/1:5,5:10:99:152,0,159
22    40364415    rs2267423    A    G    61.76    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=8.82;ReadPosRankSum=0.937;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478445    GT:AD:DP:GQ:PL    0/1:4,3:7:91.76:92,0,107
22    40574170    rs6001827    T    A    3958.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.734;MQ=59.51;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301923    GT:AD:DP:GQ:PL    1/1:0,133:133:99:3959,340,0
22    40649823    rs138047404    CCTT    C    171.31    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=34.6766;IndelType=D;MQ=58.63;MQ0=0;MQRankSum=0.198;QD=19.03;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301923    GT:AD:DP:GQ:PL    0/1:4,5:9:99:210,0,108
22    40669648    rs733381    A    G    267.31    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=2.964;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.212;QD=16.71;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301923    GT:AD:DP:GQ:PL    0/1:7,9:16:99:297,0,238
22    40673999    rs2413621    C    T    198.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301923    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:231,18,0
22    40681788    rs6001862    C    T    7305.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DB;DP=212;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.1445;MQ=59.78;MQ0=0;MQRankSum=-1.519;QD=34.46;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301923    GT:AD:DP:GQ:PL    1/1:1,211:212:99:7305,536,0
22    40697377    rs5995843    A    G    1657.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=32.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497559    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1691,120,0
22    40708679    rs2072858    T    C    6355.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9623;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301923    GT:AD:DP:GQ:PL    1/1:0,178:178:99:6356,466,0
22    40711227    rs142039128    A    AT    821.25    PASS    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.15;DB;DP=51;FS=0.0;HRun=3;HaplotypeScore=127.8137;IndelType=I;MQ=60.42;MQ0=0;MQRankSum=0.09;QD=16.1;ReadPosRankSum=0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301923    GT:AD:DP:GQ:PL    0/1:27,24:51:99:860,0,749
22    40711620    rs17332320    G    T    102.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.368;QD=12.77;ReadPosRankSum=-0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNRC6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000301923    GT:AD:DP:GQ:PL    0/1:4,4:8:99:132,0,134
22    40757228    rs8135371    A    C    1025.88    PASS    AB=0.554;AC=1;AF=0.50;AN=2;BaseQRankSum=4.781;DB;DP=83;Dels=0.0;FS=0.973;HRun=1;HaplotypeScore=0.0;MQ=59.44;MQ0=0;MQRankSum=-1.006;QD=12.36;ReadPosRankSum=-1.378;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADSL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477111    GT:AD:DP:GQ:PL    0/1:46,37:83:99:1056,0,1508
22    40797447    rs9611337    T    A    278.62    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=0.212;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=2.117;QD=17.41;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248929    GT:AD:DP:GQ:PL    0/1:7,9:16:99:309,0,241
22    40800071    rs760700    A    G    66.57    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=13.31;ReadPosRankSum=-0.731;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248929    GT:AD:DP:GQ:PL    0/1:1,4:5:17.49:97,0,17
22    40800518    rs760701    G    A    287.39    PASS    AB=0.471;AC=1;AF=0.50;AN=2;BaseQRankSum=2.55;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.203;QD=16.91;ReadPosRankSum=0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248929    GT:AD:DP:GQ:PL    0/1:8,9:17:99:317,0,217
22    40800544    rs2235318    C    T    263.76    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=0.857;DB;DP=19;Dels=0.0;FS=8.512;HRun=0;HaplotypeScore=0.9993;MQ=58.01;MQ0=0;MQRankSum=0.449;QD=13.88;ReadPosRankSum=-0.041;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SGSM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248929    GT:AD:DP:GQ:PL    0/1:10,9:19:99:294,0,254
22    40801312    rs12483888    A    G    89.32    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.533;DB;DP=14;Dels=0.0;FS=6.56;HRun=1;HaplotypeScore=1.8332;MQ=58.33;MQ0=0;MQRankSum=0.267;QD=6.38;ReadPosRankSum=0.667;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355630    GT:AD:DP:GQ:PL    0/1:9,5:14:99:119,0,264
22    40803112    rs55844816    C    T    70.54    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=11.76;ReadPosRankSum=-0.406;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355630    GT:AD:DP:GQ:PL    0/1:3,3:6:99:101,0,104
22    40803186    rs2018393    G    T    787.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355630    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:821,63,0
22    40816749    rs2072856    G    A    617.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355630    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:651,48,0
22    40859004    rs8135759    T    C    512.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MKL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355630    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:545,42,0
22    41194909    rs138306    C    T    73.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=SLC25A17;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434185    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:106,9,0
22    41227086    rs138335    C    G    209.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411695    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
22    41244398    rs138344    C    G    416.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ST13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216218    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:450,33,0
22    41460489    rs9611487    C    T    389.29    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.553;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;MQRankSum=0.065;QD=12.56;ReadPosRankSum=1.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=misc_RNA;SNPEFF_GENE_NAME=Y_RNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362645    GT:AD:DP:GQ:PL    0/1:15,16:31:99:419,0,380
22    41513094    rs2144342    G    T    340.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:373,30,0
22    41521717    rs5758240    T    C    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
22    41523937    rs738632    A    G    172.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:205,15,0
22    41537234    rs6002267    G    T    1931.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    1/1:0,64:64:99:1964,159,0
22    41545024    rs71761046    GT    G    245.95    PASS    AB=0.674;AC=1;AF=0.50;AN=2;BaseQRankSum=0.325;DB;DP=59;FS=3.847;HRun=14;HaplotypeScore=302.2192;IndelType=D;MQ=56.35;MQ0=0;MQRankSum=0.163;QD=4.1;ReadPosRankSum=1.896;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    0/1:29,26:59:99:285,0,379
22    41548008    rs20551    A    G    1800.36    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=0.449;DB;DP=109;Dels=0.0;FS=5.509;HRun=0;HaplotypeScore=0.0;MQ=59.79;MQ0=0;MQRankSum=0.258;QD=16.52;ReadPosRankSum=-0.049;SNPEFF_AMINO_ACID_CHANGE=I997V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_41547837_41548016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    0/1:52,57:109:99:1830,0,1674
22    41550954    rs4822011    C    T    1889.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.37;MQ0=0;QD=33.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1923,144,0
22    41551039    rs20552    T    A    4456.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8874;MQ=58.86;MQ0=0;QD=33.5;SNPEFF_AMINO_ACID_CHANGE=T1061;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_41550999_41551117;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    1/1:0,133:133:99:4456,334,0
22    41564287    rs2057070    T    C    147.94    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.466;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.399;MQ=60.0;MQ0=0;MQRankSum=1.031;QD=12.33;ReadPosRankSum=0.825;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    0/1:7,5:12:99:178,0,214
22    41565827    rs9611509    A    G    36.22    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.07;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    0/1:1,2:3:17.66:66,0,18
22    41566595    rs6002271    C    T    419.98    PASS    AB=0.541;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.284;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8271;MQ=58.16;MQ0=0;MQRankSum=0.215;QD=11.05;ReadPosRankSum=-1.271;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    0/1:20,17:38:99:450,0,649
22    41568480    rs2076577    T    C    966.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    1/1:0,28:28:72.22:1000,72,0
22    41569609    rs2076578    C    T    1269.05    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=1.406;DB;DP=108;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.5226;MQ=59.14;MQ0=0;MQRankSum=0.946;QD=11.75;ReadPosRankSum=0.722;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    0/1:61,47:108:99:1299,0,2176
22    41569887    rs2076580    G    A    761.45    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.448;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=-0.979;QD=14.64;ReadPosRankSum=0.888;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    0/1:26,26:52:99:791,0,844
22    41574969    rs35508493    TGTA    T    683.61    PASS    AB=0.702;AC=1;AF=0.50;AN=2;BaseQRankSum=4.257;DB;DP=40;FS=1.342;HRun=0;HaplotypeScore=157.5795;IndelType=D;MQ=58.53;MQ0=0;MQRankSum=-0.117;QD=17.09;ReadPosRankSum=-0.763;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EP300;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263253    GT:AD:DP:GQ:PL    0/1:23,17:40:99:723,0,1260
22    41609690    rs3818003    C    T    61.94    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=12.39;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000453659    GT:AD:DP:GQ:PL    0/1:2,3:5:67.84:92,0,68
22    41613188    rs9611519    C    T    452.79    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.522;DB;DP=31;Dels=0.0;FS=6.576;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.403;QD=14.61;ReadPosRankSum=0.929;SNPEFF_AMINO_ACID_CHANGE=P194;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_41613127_41613206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216237    GT:AD:DP:GQ:PL    0/1:16,15:31:99:483,0,451
22    41613303    rs9611520    C    T    32.05    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.01;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489136    GT:AD:DP:GQ:PL    0/1:2,2:4:62.04:62,0,72
22    41615376    rs2273085    C    T    283.17    PASS    AB=0.657;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.145;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9947;MQ=60.0;MQ0=0;MQRankSum=0.33;QD=8.09;ReadPosRankSum=-2.103;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489136    GT:AD:DP:GQ:PL    0/1:23,12:35:99:313,0,745
22    41617026    rs79543    T    C    37.49    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9947;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.5;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489136    GT:AD:DP:GQ:PL    0/1:1,2:3:19.62:67,0,20
22    41617318    rs139472    G    C    1175.85    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=0.267;DB;DP=92;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7608;MQ=59.5;MQ0=0;MQRankSum=-1.437;QD=12.78;ReadPosRankSum=0.299;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L3MBTL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489136    GT:AD:DP:GQ:PL    0/1:49,43:92:99:1206,0,1502
22    41621714    rs2179744    G    A    283.84    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=4.031;DB;DP=23;Dels=0.0;FS=6.628;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.092;QD=12.34;ReadPosRankSum=0.585;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHADL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216241    GT:AD:DP:GQ:PL    0/1:12,11:23:99:314,0,349
22    41645500    rs67373802    TG    T    71.95    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.267;DB;DP=15;FS=2.363;HRun=7;HaplotypeScore=34.218;IndelType=D;MQ=59.48;MQ0=0;MQRankSum=0.133;QD=4.8;ReadPosRankSum=1.333;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356244    GT:AD:DP:GQ:PL    0/1:10,5:15:99:111,0,287
22    41645757    rs71948    C    G    538.53    PASS    AB=0.512;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.48;MQ0=0;MQRankSum=-1.524;QD=12.52;ReadPosRankSum=0.139;SNPEFF_AMINO_ACID_CHANGE=L461;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_41645733_41645821;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407260    GT:AD:DP:GQ:PL    0/1:22,21:43:99:569,0,670
22    41650699    rs139504    C    G    121.51    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9469;MQ=58.05;MQ0=0;MQRankSum=0.583;QD=10.13;ReadPosRankSum=0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356244    GT:AD:DP:GQ:PL    0/1:6,6:12:99:152,0,170
22    41652846    rs4820435    G    T    396.15    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.41;DB;DP=21;Dels=0.0;FS=2.831;HRun=0;HaplotypeScore=0.0;MQ=57.77;MQ0=0;MQRankSum=0.037;QD=18.86;ReadPosRankSum=-1.231;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356244    GT:AD:DP:GQ:PL    0/1:7,14:21:99:426,0,185
22    41657626    rs2235850    C    T    320.38    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.115;DB;DP=19;Dels=0.0;FS=2.629;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=16.86;ReadPosRankSum=-0.537;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452543    GT:AD:DP:GQ:PL    0/1:8,11:19:99:350,0,273
22    41660964    rs139520    A    G    166.61    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=1.317;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.537;QD=9.8;ReadPosRankSum=-2.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418067    GT:AD:DP:GQ:PL    0/1:10,7:17:99:197,0,347
22    41677214    rs139533    T    C    72.34    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.09;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RANGAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356244    GT:AD:DP:GQ:PL    0/1:1,3:4:23.22:102,0,23
22    41739370    rs1883828    T    C    426.06    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.157;DB;DP=39;Dels=0.0;FS=1.481;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;MQRankSum=0.328;QD=10.92;ReadPosRankSum=0.157;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351589    GT:AD:DP:GQ:PL    0/1:23,16:39:99:456,0,691
22    41745355    rs2281331    A    G    180.67    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=15.06;ReadPosRankSum=-0.529;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351589    GT:AD:DP:GQ:PL    0/1:5,7:12:99:211,0,173
22    41753569    rs55897023    T    C    77.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=19.5;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZC3H7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000351589    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:110,9,0
22    41790179    rs17365991    G    A    1010.94    PASS    AB=0.56;AC=1;AF=0.50;AN=2;BaseQRankSum=3.858;DB;DP=84;Dels=0.0;FS=3.049;HRun=0;HaplotypeScore=0.0;MQ=59.73;MQ0=0;MQRankSum=-0.28;QD=12.04;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=P155;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_41790100_41790320;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEF;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406644    GT:AD:DP:GQ:PL    0/1:47,37:84:99:1041,0,1367
22    41829794    rs6609    C    G    484.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.61;MQ0=2;QD=22.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434408    GT:AD:DP:GQ:PL    1/1:1,21:22:45.12:517,45,0
22    41833116    rs202641    C    T    1976.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.31;MQ0=0;QD=32.39;SNPEFF_AMINO_ACID_CHANGE=A78;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_41829496_41833411;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000327492    GT:AD:DP:GQ:PL    1/1:1,60:61:99:2009,153,0
22    41833527    rs79717394    C    T    113.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TOB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327492    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:146,12,0
22    41863423    rs202631    A    G    322.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216252    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:356,30,0
22    41863681    rs150112406    GGGGAAATATACTAGTCTCCT    G    377.19    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.927;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=235.0875;IndelType=D;MQ=57.16;MQ0=0;MQRankSum=-0.533;QD=25.15;ReadPosRankSum=0.212;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216252    GT:AD:DP:GQ:PL    0/1:10,5:15:99:416,0,1399
22    41864216    rs505533    A    C    296.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF5A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216252    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:329,24,0
22    41911525    rs1799932    C    T    407.08    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.618;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=59.25;MQ0=0;MQRankSum=0.041;QD=13.13;ReadPosRankSum=0.83;SNPEFF_AMINO_ACID_CHANGE=L205;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_41911381_41911539;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544234    GT:AD:DP:GQ:PL    0/1:16,15:31:99:437,0,465
22    41922517    .    G    A    554.60    PASS    AB=0.414;AC=1;AF=0.50;AN=2;BaseQRankSum=0.022;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.81;MQ=59.2;MQ0=0;MQRankSum=1.661;QD=19.12;ReadPosRankSum=0.642;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACO2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466237    GT:AD:DP:GQ:PL    0/1:12,17:29:99:585,0,356
22    41968219    rs77755184    C    G    121.83    PASS    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.731;QD=24.37;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PMM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216259    GT:AD:DP:GQ:PL    0/1:1,4:5:26.18:152,0,26
22    41973452    rs147762501    C    T    369.94    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=21;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.244;QD=17.62;ReadPosRankSum=0.959;SNPEFF_AMINO_ACID_CHANGE=T143I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_41973273_41973745;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000460790    GT:AD:DP:GQ:PL    0/1:9,12:21:99:400,0,303
22    42016699    rs2267437    C    G    127.90    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.361;QD=14.21;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPPDE2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263256    GT:AD:DP:GQ:PL    0/1:4,5:9:99:158,0,124
22    42031953    rs132774    C    G    143.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359308    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:176,15,0
22    42059768    rs132788    G    T    557.70    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.031;DB;DP=45;Dels=0.0;FS=9.534;HRun=0;HaplotypeScore=0.0;MQ=58.22;MQ0=0;MQRankSum=-0.062;QD=12.39;ReadPosRankSum=-0.677;SNPEFF_AMINO_ACID_CHANGE=G460;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42059626_42060042;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XRCC6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000428575    GT:AD:DP:GQ:PL    0/1:25,20:45:99:588,0,859
22    42070793    rs132806    C    T    177.59    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.742;QD=25.37;ReadPosRankSum=-0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476443    GT:AD:DP:GQ:PL    0/1:1,6:7:20.18:208,0,20
22    42072535    rs113532918    CT    C    74.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=12;HaplotypeScore=24.3119;IndelType=D;MQ=56.82;MQ0=0;QD=12.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476443    GT:AD:DP:GQ:PL    1/1:0,6:6:14.94:116,15,0
22    42072912    rs1807497    C    A    2240.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9326;MQ=43.95;MQ0=5;QD=28.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476443    GT:AD:DP:GQ:PL    1/1:0,77:78:99:2273,187,0
22    42073134    rs1811113    C    T    1526.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=49.53;MQ0=0;QD=31.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSDC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476443    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1560,120,0
22    42076381    rs5758405    C    A    1088.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHP2L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215956    GT:AD:DP:GQ:PL    1/1:0,31:31:84.27:1121,84,0
22    42090069    rs739135    A    C    383.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C22orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472110    GT:AD:DP:GQ:PL    1/1:0,11:11:33.09:417,33,0
22    42091027    rs35117663    A    AAG    1957.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.0;HRun=0;HaplotypeScore=106.1795;IndelType=I;MQ=58.51;MQ0=2;QD=44.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=C22orf46;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472110    GT:AD:DP:GQ:PL    1/1:5,39:42:99:1999,114,0
22    42109917    rs5758431    A    G    409.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:442,33,0
22    42111896    rs9306355    A    T    528.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,16:17:48.12:561,48,0
22    42126301    rs2179332    C    G    132.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
22    42128097    rs5751144    G    A    80.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:112,9,0
22    42139054    rs5751147    G    A    3150.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,93:93:99:3183,229,0
22    42139078    rs5751148    A    G    3374.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.6857;MQ=59.76;MQ0=0;QD=34.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,97:98:99:3374,250,0
22    42141640    rs5758450    G    A    87.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
22    42148467    rs715498    G    A    174.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
22    42150146    rs1534932    C    T    622.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,16:16:48.16:655,48,0
22    42154132    rs5758458    G    A    71.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:104,9,0
22    42159072    rs713988    A    G    163.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=55.63;MQ0=0;QD=13.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460702    GT:AD:DP:GQ:PL    1/1:0,12:12:23.94:196,24,0
22    42159073    rs76566660    T    C    185.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=55.63;MQ0=0;QD=15.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460702    GT:AD:DP:GQ:PL    1/1:0,12:12:26.92:218,27,0
22    42159229    rs2050033    G    T    2903.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=59.73;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=S42;SNPEFF_CODON_CHANGE=tcG/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42159178_42159325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540880    GT:AD:DP:GQ:PL    1/1:1,85:86:99:2936,214,0
22    42166486    rs1983576    G    A    74.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540833    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:107,9,0
22    42189810    rs113484758    A    AT    35.74    QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=2.001;DB;DP=24;FS=0.0;HRun=16;HaplotypeScore=178.0431;IndelType=I;MQ=53.95;MQ0=0;MQRankSum=-0.968;QD=1.49;ReadPosRankSum=0.194;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    0/1:15,5:24:73.15:75,0,73
22    42190309    rs738247    A    G    927.87    PASS    AB=0.639;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.152;DB;DP=108;Dels=0.0;FS=5.52;HRun=2;HaplotypeScore=0.9995;MQ=59.57;MQ0=0;MQRankSum=0.968;QD=8.59;ReadPosRankSum=-0.935;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MEI1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000300398    GT:AD:DP:GQ:PL    0/1:69,39:108:99:958,0,2315
22    42206050    rs140810110    C    T    200.16    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.521;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=58.84;MQ0=0;MQRankSum=0.289;QD=10.01;ReadPosRankSum=-1.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC134;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429249    GT:AD:DP:GQ:PL    0/1:10,10:20:99:230,0,243
22    42230349    rs10608168    TCA    T    919.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=75.3498;IndelType=D;MQ=59.94;MQ0=0;QD=41.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SREBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361204    GT:AD:DP:GQ:PL    1/1:0,22:22:66.22:961,66,0
22    42267196    rs9607853    C    T    70.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=56.16;MQ0=0;MQRankSum=0.358;QD=14.08;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SREBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361204    GT:AD:DP:GQ:PL    0/1:2,3:5:49.94:100,0,50
22    42273462    rs17848346    G    A    375.10    PASS    AB=0.294;AC=1;AF=0.50;AN=2;BaseQRankSum=0.369;DB;DP=17;Dels=0.0;FS=5.315;HRun=0;HaplotypeScore=0.9933;MQ=58.63;MQ0=0;MQRankSum=-1.528;QD=22.06;ReadPosRankSum=-0.369;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SREBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462539    GT:AD:DP:GQ:PL    0/1:5,12:17:99:405,0,157
22    42276742    rs2228314    G    C    1494.08    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.35;DB;DP=116;Dels=0.0;FS=4.688;HRun=1;HaplotypeScore=1.5782;MQ=59.44;MQ0=0;MQRankSum=-0.093;QD=12.88;ReadPosRankSum=0.355;SNPEFF_AMINO_ACID_CHANGE=G595A;SNPEFF_CODON_CHANGE=gGc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42276720_42276996;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SREBF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361204    GT:AD:DP:GQ:PL    0/1:59,56:116:99:1524,0,1688
22    42280618    rs2269658    T    C    51    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SREBF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361204    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
22    42336172    rs5758511    G    A    307.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.14;DB;DP=18;Dels=0.0;FS=2.029;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.89;QD=17.06;ReadPosRankSum=-1.171;SNPEFF_AMINO_ACID_CHANGE=R3*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_22_42336143_42336223;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CENPM;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000472374    GT:AD:DP:GQ:PL    0/1:6,12:18:99:337,0,191
22    42385352    rs4820454    A    G    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460267    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
22    42388841    rs133299    G    A    165.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449288    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
22    42390887    rs60720940    C    CTGTG    273.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=82.9081;IndelType=I;MQ=55.45;MQ0=0;QD=22.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000291236    GT:AD:DP:GQ:PL    1/1:7,5:12:16.29:315,16,0
22    42416056    rs133335    A    G    2133.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=D121G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42416008_42416100;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WBP2NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328823    GT:AD:DP:GQ:PL    1/1:0,64:64:99:2167,159,0
22    42418185    rs133341    T    C    843.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WBP2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328823    GT:AD:DP:GQ:PL    1/1:0,24:24:66.22:877,66,0
22    42423110    rs2301521    G    C    5482.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.3114;MQ=59.77;MQ0=0;QD=30.63;SNPEFF_AMINO_ACID_CHANGE=Q211H;SNPEFF_CODON_CHANGE=caG/caC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42422770_42423266;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WBP2NL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543212    GT:AD:DP:GQ:PL    1/1:0,179:179:99:5482,448,0
22    42428727    rs133349    A    T    1448.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=WBP2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328823    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1481,111,0
22    42463366    rs133367    C    T    954.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396398    GT:AD:DP:GQ:PL    1/1:0,27:27:75.24:987,75,0
22    42463689    rs133368    T    C    378.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000396398    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:411,30,0
22    42463814    rs133369    C    T    1169.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.019;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.3639;MQ=59.38;MQ0=0;MQRankSum=1.019;QD=31.61;ReadPosRankSum=0.306;SNPEFF_AMINO_ACID_CHANGE=P93;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42463769_42463940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396398    GT:AD:DP:GQ:PL    1/1:1,36:37:57.73:1202,58,0
22    42466509    rs133375    C    G    297.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=27.07;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_42466286_42466834;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAGA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396398    GT:AD:DP:GQ:PL    1/1:0,11:11:27.05:331,27,0
22    42473603    rs133383    C    T    1567.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.36;SNPEFF_AMINO_ACID_CHANGE=A102;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42473284_42475445;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM109B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000321753    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1601,120,0
22    42522613    rs1135840    G    C    246.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.57;MQ0=0;QD=30.76;SNPEFF_AMINO_ACID_CHANGE=T432S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42522503_42522754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP2D6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413640    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:279,21,0
22    42523003    rs116917064    A    G    66.25    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.01;MQ0=2;QD=8.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547929    GT:AD:DP:GQ:PL    1/1:0,8:8:11.98:99,12,0
22    42523409    rs1985842    G    T    308.06    PASS    AB=0.381;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.545;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=50.47;MQ0=2;MQRankSum=2.95;QD=14.67;ReadPosRankSum=0.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000547929    GT:AD:DP:GQ:PL    0/1:8,13:21:99:338,0,115
22    42523943    rs16947    A    G    1148.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.8;MQ0=0;QD=32.81;SNPEFF_AMINO_ACID_CHANGE=C242R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42523844_42523985;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP2D6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413640    GT:AD:DP:GQ:PL    1/1:0,35:35:93.24:1181,93,0
22    42524795    rs28371713    A    G    117.45    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.246;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.22;MQ0=0;MQRankSum=-1.813;QD=7.34;ReadPosRankSum=1.473;SNPEFF_AMINO_ACID_CHANGE=F165;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42524786_42524902;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP2D6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413640    GT:AD:DP:GQ:PL    0/1:11,5:16:99:147,0,332
22    42525132    rs1058164    G    C    1072.86    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.24;MQ0=1;QD=26.82;SNPEFF_AMINO_ACID_CHANGE=V136;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42525035_42525187;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP2D6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360608    GT:AD:DP:GQ:PL    1/1:0,40:40:93.25:1106,93,0
22    42525952    rs71328650    C    A    132.56    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.8;MQ0=2;QD=18.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549112    GT:AD:DP:GQ:PL    1/1:0,7:7:15.03:165,15,0
22    42526549    rs56011157    C    T    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549112    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
22    42526573    rs1080996    T    G    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549112    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
22    42526580    rs1080995    G    C    142.23    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.32;MQ0=0;QD=28.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000549112    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:175,15,0
22    42536211    rs2092118    G    A    34.75    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.02;MQ0=0;QD=11.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf32;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000548016    GT:AD:DP:GQ:PL    1/1:0,3:3:6.01:66,6,0
22    42537196    rs56404506    T    C    98.99    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=37.31;MQ0=0;QD=16.5;SNPEFF_AMINO_ACID_CHANGE=H290R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42537162_42537349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436260    GT:AD:DP:GQ:PL    1/1:0,6:6:12.01:131,12,0
22    42537241    rs56127449    C    T    48.94    PASS    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=45.99;MQ0=1;MQRankSum=-0.929;QD=3.76;ReadPosRankSum=0.0;SNPEFF_AMINO_ACID_CHANGE=R19H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42537162_42537349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000435101    GT:AD:DP:GQ:PL    0/1:9,4:13:78.93:79,0,249
22    42537271    rs28510588    T    C    96.50    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=1.709;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=48.76;MQ0=1;MQRankSum=-1.473;QD=5.68;ReadPosRankSum=-0.059;SNPEFF_AMINO_ACID_CHANGE=Y265C;SNPEFF_CODON_CHANGE=tAc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42537162_42537349;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436260    GT:AD:DP:GQ:PL    0/1:11,6:17:99:126,0,279
22    42537404    rs2854741    G    C    388.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.05;MQ0=0;QD=32.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424775    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:422,33,0
22    42537597    rs1800754    A    G    721.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=25.77;SNPEFF_AMINO_ACID_CHANGE=L221S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42537544_42537685;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436260    GT:AD:DP:GQ:PL    1/1:0,28:28:60.17:755,60,0
22    42538029    rs1058167    A    G    1228.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=48.52;MQ0=0;QD=29.95;SNPEFF_AMINO_ACID_CHANGE=L141P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42537878_42538054;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000436260    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1261,99,0
22    42538103    rs3021083    T    C    886.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=42.41;MQ0=1;QD=30.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424775    GT:AD:DP:GQ:PL    1/1:0,29:29:72.21:920,72,0
22    42538229    rs28514673    G    A    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.96;MQ0=0;QD=29.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424775    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
22    42538618    rs3021080    A    G    249.12    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.45;MQ0=1;QD=27.68;SNPEFF_AMINO_ACID_CHANGE=S67P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42538480_42538671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535769    GT:AD:DP:GQ:PL    1/1:1,8:9:24.06:282,24,0
22    42538669    rs55816780    C    T    509.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.97;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=D50N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42538480_42538671;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535769    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:542,42,0
22    42538704    rs2743459    G    T    480.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.85;MQ0=0;QD=32.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424775    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:513,39,0
22    42538876    rs3020732    A    T    839.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9992;MQ=59.31;MQ0=0;QD=31.1;SNPEFF_AMINO_ACID_CHANGE=F119I;SNPEFF_CODON_CHANGE=Ttc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42538729_42538881;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000428297    GT:AD:DP:GQ:PL    1/1:0,27:27:69.17:873,69,0
22    42538897    rs2854740    A    G    643.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=30.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYP2D7P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435688    GT:AD:DP:GQ:PL    1/1:0,21:21:51.16:677,51,0
22    42540551    rs2743461    A    G    45.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.11;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CYP2D6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000542856    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
22    42575517    .    AG    A    424.09    PASS    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=1.626;DP=63;FS=0.0;HRun=1;HaplotypeScore=665.8004;IndelType=D;MQ=43.09;MQ0=0;MQRankSum=-3.362;QD=6.73;ReadPosRankSum=2.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCF20;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335626    GT:AD:DP:GQ:PL    0/1:48,15:63:99:463,0,296
22    42779699    rs2413687    T    C    86.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=9.57;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    1/1:0,8:9:12:119,12,0
22    42779752    rs2092175    T    A    96.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.33;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:129,12,0
22    42779879    rs731026    G    A    64.93    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=0.825;DB;DP=11;Dels=0.0;FS=6.154;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.717;QD=5.9;ReadPosRankSum=1.186;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    0/1:6,5:11:94.93:95,0,178
22    42779880    rs731025    G    A    67.94    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=7.782;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.47;QD=6.79;ReadPosRankSum=1.098;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    0/1:5,5:10:97.94:98,0,143
22    42780331    rs713942    G    C    210.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.11;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
22    42780985    rs12484229    T    C    263.82    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=3.267;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.38;QD=13.19;ReadPosRankSum=-0.532;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    0/1:11,9:20:99:294,0,339
22    42781071    rs12484478    G    A    812.27    PASS    AB=0.53;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.902;DB;DP=66;Dels=0.0;FS=1.47;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.218;QD=12.31;ReadPosRankSum=-1.567;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    0/1:35,31:66:99:842,0,1090
22    42783130    rs11913215    G    T    31.51    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.422;QD=3.5;ReadPosRankSum=0.248;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    0/1:6,3:9:61.50:61,0,177
22    42807314    rs2247576    T    C    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NFAM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329021    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
22    42896474    rs2413692    T    C    144.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=28.83;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SERHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359906    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
22    42897414    rs5758765    A    C    63.30    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.82;MQ0=0;QD=15.83;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SERHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359906    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:95,9,0
22    42897418    rs5751287    C    G    65.53    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=38.82;MQ0=0;QD=16.38;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SERHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359906    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:98,9,0
22    42898835    .    AC    A    183.07    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DP=8;FS=0.0;HRun=1;HaplotypeScore=23.0524;IndelType=D;MQ=17.87;MQ0=7;MQRankSum=0.0;QD=12.2;ReadPosRankSum=-1.067;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SERHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434218    GT:AD:DP:GQ:PL    0/1:5,10:8:71.93:222,0,72
22    42899151    rs147364890    G    A    1109.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=41.4;MQ0=3;QD=27.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SERHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434218    GT:AD:DP:GQ:PL    1/1:1,40:41:90.28:1143,90,0
22    42899387    .    G    A    231.71    MQFilter40    AC=2;AF=1.00;AN=2;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=27.99;MQ0=4;QD=21.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=SERHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434218    GT:AD:DP:GQ:PL    1/1:0,11:11:21.07:265,21,0
22    42905055    rs56365446    G    A    807.39    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9734;MQ=31.68;MQ0=1;QD=26.91;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323013    GT:AD:DP:GQ:PL    1/1:0,30:30:75.19:840,75,0
22    42905165    rs55732408    G    A    820.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.25;MQ0=0;QD=35.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323013    GT:AD:DP:GQ:PL    1/1:0,23:23:66.19:853,66,0
22    42908095    rs111729042    T    C    284.02    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=17.3;MQ0=14;QD=10.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    1/1:0,28:28:30.07:317,30,0
22    42908125    rs11553436    G    A    157.16    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=14.07;MQ0=20;QD=5.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    1/1:1,28:30:18.04:190,18,0
22    42908186    rs144737997    G    C    1115.90    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.038;DB;DP=56;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=24.12;MQ0=11;MQRankSum=0.654;QD=19.93;ReadPosRankSum=0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    1/1:1,55:56:95.47:1149,95,0
22    42908297    .    C    CT    378.25    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.739;DP=11;FS=0.0;HRun=1;HaplotypeScore=26.1902;IndelType=I;MQ=23.48;MQ0=3;MQRankSum=0.474;QD=18.01;ReadPosRankSum=-1.107;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    0/1:3,18:11:5.87:417,0,6
22    42908870    rs9745    T    G    330.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.54;MQ0=0;QD=23.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    1/1:0,14:14:33.06:363,33,0
22    42908897    rs13504    T    C    612.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.82;MQ0=0;QD=32.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:645,51,0
22    42910038    rs148135124    A    T    199.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=46.08;MQ0=0;QD=28.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:233,21,0
22    42910510    rs4822145    G    A    72.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.73;MQ0=0;QD=24.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
22    42910611    rs2179231    T    C    83.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.14;MQ0=1;QD=16.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:116,9,0
22    42910676    rs4820471    C    T    179.64    MQFilter40    AB=0.214;AC=1;AF=0.50;AN=2;BaseQRankSum=1.109;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.32;MQ0=1;MQRankSum=0.185;QD=11.98;ReadPosRankSum=-0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000416699    GT:AD:DP:GQ:PL    0/1:3,11:15:44.94:210,0,45
22    42910769    rs4822146    G    A    491.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.05;MQ0=1;QD=23.4;SNPEFF_AMINO_ACID_CHANGE=Y159;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42910688_42910785;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000323013    GT:AD:DP:GQ:PL    1/1:1,20:21:45.09:524,45,0
22    42912097    rs11553441    C    T    893.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=58.45;MQ0=0;QD=29.78;SNPEFF_AMINO_ACID_CHANGE=V88I;SNPEFF_CODON_CHANGE=Gta/Ata;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42912017_42912142;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRP7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000323013    GT:AD:DP:GQ:PL    1/1:0,30:30:72.20:926,72,0
22    42952702    .    G    A    105.26    MQFilter40    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.05;MQ0=7;MQRankSum=0.0;QD=7.02;ReadPosRankSum=-1.638;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472589    GT:AD:DP:GQ:PL    0/1:6,9:15:99:135,0,131
22    42952728    rs3827360    G    A    92.50    MQFilter40    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.16;MQ0=4;MQRankSum=0.336;QD=6.61;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472589    GT:AD:DP:GQ:PL    0/1:8,6:14:99:122,0,170
22    42955974    rs137026    T    C    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447870    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
22    42967235    rs137046    C    T    720.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.48;MQ0=1;QD=28.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327678    GT:AD:DP:GQ:PL    1/1:0,25:25:60.16:753,60,0
22    42969854    rs137053    T    G    1057.14    MQFilter40    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.036;DB;DP=82;Dels=0.0;FS=11.058;HRun=1;HaplotypeScore=0.734;MQ=38.38;MQ0=0;MQRankSum=4.44;QD=12.89;ReadPosRankSum=1.331;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534080    GT:AD:DP:GQ:PL    0/1:39,43:82:99:1087,0,479
22    42969877    rs137054    G    A    1297.73    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=5.538;DB;DP=113;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=40.72;MQ0=0;MQRankSum=5.407;QD=11.48;ReadPosRankSum=1.897;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534080    GT:AD:DP:GQ:PL    0/1:63,50:113:99:1328,0,1107
22    42969919    .    C    T    1575.96    PASS    AB=0.511;AC=1;AF=0.50;AN=2;BaseQRankSum=0.671;DP=177;Dels=0.0;FS=3.865;HRun=0;HaplotypeScore=2.4875;MQ=46.08;MQ0=0;MQRankSum=-9.418;QD=8.9;ReadPosRankSum=2.818;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000534080    GT:AD:DP:GQ:PL    0/1:90,86:177:99:1606,0,2365
22    42970004    rs147451679    G    C    504.91    PASS    AB=0.721;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.689;DB;DP=137;Dels=0.0;FS=29.379;HRun=0;HaplotypeScore=0.9734;MQ=43.48;MQ0=6;MQRankSum=-4.177;QD=3.69;ReadPosRankSum=-0.679;SNPEFF_AMINO_ACID_CHANGE=V116;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_42969942_42970388;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000356720    GT:AD:DP:GQ:PL    0/1:98,38:137:99:535,0,2587
22    42970115    .    C    CT    80.62    QDFilter2    AB=0.896;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.559;DP=39;FS=0.0;HRun=1;HaplotypeScore=90.889;IndelType=I;MQ=29.71;MQ0=5;MQRankSum=-2.805;QD=1.34;ReadPosRankSum=1.815;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335879    GT:AD:DP:GQ:PL    0/1:53,7:39:99:120,0,1064
22    42970242    rs137056    G    A    113.31    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=33.94;MQ0=1;MQRankSum=0.742;QD=14.16;ReadPosRankSum=0.742;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335879    GT:AD:DP:GQ:PL    1/1:2,6:8:12.04:146,12,0
22    42970263    rs9590    C    G    85.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.09;MQ0=1;QD=21.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000335879    GT:AD:DP:GQ:PL    1/1:1,3:4:9.03:118,9,0
22    42972063    rs142752113    C    T    418.65    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.134;DB;DP=29;Dels=0.0;FS=11.635;HRun=0;HaplotypeScore=1.8907;MQ=36.25;MQ0=6;MQRankSum=-0.582;QD=14.44;ReadPosRankSum=0.045;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327678    GT:AD:DP:GQ:PL    0/1:9,18:29:53.87:449,0,54
22    42972485    rs137068    C    T    73.26    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=28.17;MQ0=3;QD=12.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327678    GT:AD:DP:GQ:PL    1/1:0,6:6:9.02:105,9,0
22    42972590    rs137071    A    G    351.05    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=33.28;MQ0=0;QD=16.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SERHL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327678    GT:AD:DP:GQ:PL    1/1:0,21:21:33.07:384,33,0
22    42981138    rs137085    T    C    245.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POLDIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451060    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:278,21,0
22    42981167    rs137086    G    A    429.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=28.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POLDIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451060    GT:AD:DP:GQ:PL    1/1:0,15:15:36.07:463,36,0
22    42981678    rs1043606    T    C    959.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.08;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POLDIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491021    GT:AD:DP:GQ:PL    1/1:0,29:29:75.25:992,75,0
22    42983782    rs2071842    C    A    162.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=32.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=POLDIP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252115    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
22    43010601    rs6002815    G    C    79.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000352397    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:112,9,0
22    43023980    rs137138    G    A    195.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466276    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:229,18,0
22    43024410    rs137139    C    T    722.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.073;QD=32.84;ReadPosRankSum=1.569;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYB5R3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466276    GT:AD:DP:GQ:PL    1/1:1,21:22:57.18:755,57,0
22    43088971    rs9623659    C    T    243.17    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.076;DB;DP=20;Dels=0.0;FS=4.738;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.228;QD=12.16;ReadPosRankSum=0.076;SNPEFF_AMINO_ACID_CHANGE=T329;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43088127_43090003;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A4GALT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249005    GT:AD:DP:GQ:PL    0/1:11,9:20:99:273,0,366
22    43089055    rs6002904    G    C    148.76    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.197;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.041;QD=7.83;ReadPosRankSum=-0.454;SNPEFF_AMINO_ACID_CHANGE=P301;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43088127_43090003;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=A4GALT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000249005    GT:AD:DP:GQ:PL    0/1:11,8:19:99:179,0,353
22    43195147    rs1128013    A    G    1854.19    PASS    AB=0.456;AC=1;AF=0.50;AN=2;BaseQRankSum=3.322;DB;DP=114;Dels=0.0;FS=1.04;HRun=0;HaplotypeScore=0.8321;MQ=59.43;MQ0=0;MQRankSum=0.276;QD=16.26;ReadPosRankSum=-1.615;SNPEFF_AMINO_ACID_CHANGE=S405;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43195045_43195166;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429508    GT:AD:DP:GQ:PL    0/1:52,62:114:99:1884,0,1459
22    43195296    rs5758948    A    G    151.36    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=55.66;MQ0=0;MQRankSum=0.361;QD=13.76;ReadPosRankSum=-2.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263245    GT:AD:DP:GQ:PL    0/1:5,6:11:91.52:181,0,92
22    43203137    rs738535    C    T    101.97    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.361;DB;DP=9;Dels=0.0;FS=2.808;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.159;QD=11.33;ReadPosRankSum=-0.361;SNPEFF_AMINO_ACID_CHANGE=S379;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43203079_43203169;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000429508    GT:AD:DP:GQ:PL    0/1:5,4:9:99:132,0,166
22    43206950    rs1018448    A    C    648.53    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.117;DB;DP=46;Dels=0.0;FS=2.39;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=1.116;QD=14.1;ReadPosRankSum=-0.294;SNPEFF_AMINO_ACID_CHANGE=S283R;SNPEFF_CODON_CHANGE=agT/agG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43206819_43206950;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000429508    GT:AD:DP:GQ:PL    0/1:18,26:46:99:679,0,519
22    43213631    rs66459734    C    CA    494.08    PASS    AB=0.694;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.567;DB;DP=43;FS=0.0;HRun=9;HaplotypeScore=137.8835;IndelType=I;MQ=59.43;MQ0=0;MQRankSum=0.743;QD=11.49;ReadPosRankSum=-1.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263245    GT:AD:DP:GQ:PL    0/1:24,18:43:99:533,0,470
22    43218463    rs5758957    C    T    794.39    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=2.636;DB;DP=66;Dels=0.0;FS=4.503;HRun=2;HaplotypeScore=0.5784;MQ=59.65;MQ0=0;MQRankSum=1.318;QD=12.04;ReadPosRankSum=0.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454099    GT:AD:DP:GQ:PL    0/1:37,29:66:99:824,0,1130
22    43219836    rs5751378    C    G    36.72    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=7.34;ReadPosRankSum=-0.358;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263245    GT:AD:DP:GQ:PL    0/1:3,2:5:66.72:67,0,109
22    43223095    rs10654612    C    CAT    481.25    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.333;DB;DP=16;FS=0.0;HRun=0;HaplotypeScore=65.231;IndelType=I;MQ=58.55;MQ0=0;MQRankSum=0.495;QD=30.08;ReadPosRankSum=-0.636;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263245    GT:AD:DP:GQ:PL    0/1:6,10:16:99:520,0,135
22    43230140    rs2273142    C    G    749.41    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.961;DB;DP=54;Dels=0.0;FS=3.174;HRun=1;HaplotypeScore=0.0;MQ=59.57;MQ0=0;MQRankSum=0.216;QD=13.88;ReadPosRankSum=0.303;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435208    GT:AD:DP:GQ:PL    0/1:28,26:54:99:779,0,1011
22    43267336    rs113713648    T    TC    518.68    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.265;DB;DP=35;FS=2.614;HRun=6;HaplotypeScore=147.0201;IndelType=I;MQ=59.96;MQ0=0;MQRankSum=0.826;QD=14.82;ReadPosRankSum=-0.656;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARFGAP3;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:18,17:35:99:558,0,271
22    43272085    rs5751396    G    C    157.81    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.096;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.619;QD=8.31;ReadPosRankSum=-0.537;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263246    GT:AD:DP:GQ:PL    0/1:11,8:19:99:188,0,290
22    43272792    rs5751397    C    T    192.51    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.215;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.984;QD=12.83;ReadPosRankSum=-0.521;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263246    GT:AD:DP:GQ:PL    0/1:8,7:15:99:223,0,278
22    43272830    rs35041824    C    CAG    763.71    PASS    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=0.248;DB;DP=37;FS=1.608;HRun=0;HaplotypeScore=124.3595;IndelType=I;MQ=59.38;MQ0=0;MQRankSum=-0.611;QD=20.64;ReadPosRankSum=0.809;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263246    GT:AD:DP:GQ:PL    0/1:20,17:37:99:803,0,551
22    43275250    rs2073199    G    A    349.15    PASS    AB=0.423;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.692;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=13.43;ReadPosRankSum=1.914;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263246    GT:AD:DP:GQ:PL    0/1:11,15:26:99:379,0,261
22    43278162    rs4822217    T    C    460.28    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.343;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.47;MQ0=0;MQRankSum=-0.597;QD=13.15;ReadPosRankSum=-1.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263246    GT:AD:DP:GQ:PL    0/1:16,19:35:99:490,0,496
22    43278220    rs2899365    C    T    565.20    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.457;DB;DP=48;Dels=0.0;FS=1.17;HRun=0;HaplotypeScore=0.8941;MQ=59.61;MQ0=0;MQRankSum=-0.166;QD=11.78;ReadPosRankSum=-1.081;SNPEFF_AMINO_ACID_CHANGE=P292;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43278190_43278310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263246    GT:AD:DP:GQ:PL    0/1:27,21:48:99:595,0,850
22    43280650    rs2273143    T    C    74.03    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.344;DB;DP=14;Dels=0.0;FS=5.441;HRun=3;HaplotypeScore=0.9933;MQ=60.0;MQ0=0;MQRankSum=-0.071;QD=5.29;ReadPosRankSum=0.778;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263246    GT:AD:DP:GQ:PL    0/1:10,4:14:99:104,0,357
22    43286876    rs5759012    A    G    80.95    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.72;QD=11.56;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418133    GT:AD:DP:GQ:PL    0/1:3,4:7:28.61:111,0,29
22    43287290    rs12166809    G    A    144.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.103;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=-0.336;QD=14.43;ReadPosRankSum=-0.676;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445706    GT:AD:DP:GQ:PL    0/1:5,5:10:99:174,0,164
22    43289473    rs5759013    G    A    351.96    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.739;DB;DP=27;Dels=0.0;FS=1.674;HRun=1;HaplotypeScore=0.0;MQ=59.14;MQ0=0;MQRankSum=-1.2;QD=13.04;ReadPosRankSum=1.016;SNPEFF_AMINO_ACID_CHANGE=L69;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43289463_43289619;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PACSIN2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000263246    GT:AD:DP:GQ:PL    0/1:12,15:27:99:382,0,300
22    43414728    rs118178599    C    T    221.62    PASS    AB=0.438;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.635;DB;DP=16;Dels=0.0;FS=1.987;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=-1.588;QD=13.85;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRAGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL1;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,9:16:99:252,0,237
22    43435668    rs2072883    G    A    463.10    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=2.033;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.97;MQ0=0;MQRankSum=-1.13;QD=20.13;ReadPosRankSum=1.194;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440761    GT:AD:DP:GQ:PL    0/1:8,15:23:99:493,0,202
22    43436055    rs9611991    G    A    92.63    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.139;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.054;QD=5.79;ReadPosRankSum=0.597;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266254    GT:AD:DP:GQ:PL    0/1:10,6:16:99:123,0,329
22    43455592    rs17415203    G    A    240.85    PASS    AB=0.111;AC=1;AF=0.50;AN=2;BaseQRankSum=0.751;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.751;QD=26.76;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266254    GT:AD:DP:GQ:PL    0/1:1,8:9:12.93:271,0,13
22    43455665    rs5759126    A    G    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266254    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
22    43471386    rs2294413    G    C    180.09    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.334;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.44;MQ0=0;MQRankSum=0.026;QD=6.67;ReadPosRankSum=-0.694;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266254    GT:AD:DP:GQ:PL    0/1:18,9:27:99:210,0,631
22    43520258    rs4988417    A    C    1132.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216115    GT:AD:DP:GQ:PL    1/1:0,31:31:90.27:1166,90,0
22    43520263    rs2076079    A    G    458.65    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.794;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.396;QD=16.99;ReadPosRankSum=-0.356;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216115    GT:AD:DP:GQ:PL    0/1:12,15:27:99:489,0,366
22    43524487    rs4988438    CCT    C    1684.50    PASS    AB=0.691;AC=1;AF=0.50;AN=2;BaseQRankSum=6.722;DB;DP=105;FS=5.054;HRun=0;HaplotypeScore=342.5563;IndelType=D;MQ=60.4;MQ0=0;MQRankSum=-1.449;QD=16.04;ReadPosRankSum=-0.286;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290429    GT:AD:DP:GQ:PL    0/1:58,47:105:99:1724,0,2803
22    43525176    rs909666    C    T    1304.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.8499;MQ=59.41;MQ0=0;QD=33.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCAT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290429    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1337,99,0
22    43529029    rs7402    C    T    733.67    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.298;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.333;QD=15.95;ReadPosRankSum=-0.793;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216115    GT:AD:DP:GQ:PL    0/1:20,26:46:99:764,0,588
22    43529314    rs13815    G    C    794.43    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=67;Dels=0.0;FS=1.187;HRun=1;HaplotypeScore=0.0;MQ=59.66;MQ0=0;MQRankSum=-1.74;QD=11.86;ReadPosRankSum=-1.234;SNPEFF_AMINO_ACID_CHANGE=A303G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43528889_43529492;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCAT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000290429    GT:AD:DP:GQ:PL    0/1:38,29:67:99:824,0,1240
22    43529517    rs2066910    C    T    74.69    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.221;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=9.34;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BIK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216115    GT:AD:DP:GQ:PL    0/1:5,3:8:99:105,0,134
22    43564963    rs138931    C    G    35.39    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=8.85;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216129    GT:AD:DP:GQ:PL    0/1:1,3:4:23.48:65,0,23
22    43565443    rs138932    C    T    107.90    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-1.031;QD=8.99;ReadPosRankSum=1.408;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484118    GT:AD:DP:GQ:PL    0/1:6,6:12:99:138,0,137
22    43568060    rs138937    C    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484118    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
22    43569608    rs138938    C    A    32.64    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=8.16;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484118    GT:AD:DP:GQ:PL    0/1:2,2:4:62.63:63,0,72
22    43575774    rs138945    A    T    284.82    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.027;DB;DP=26;Dels=0.0;FS=1.674;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;MQRankSum=1.605;QD=10.95;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216129    GT:AD:DP:GQ:PL    0/1:13,13:26:99:315,0,388
22    43599917    rs138983    T    C    142.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.203;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=15.83;ReadPosRankSum=-2.054;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434132    GT:AD:DP:GQ:PL    0/1:3,6:9:84.59:173,0,85
22    43599991    rs13056939    C    T    455.63    PASS    AB=0.452;AC=1;AF=0.50;AN=2;BaseQRankSum=0.421;DB;DP=31;Dels=0.0;FS=1.75;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.288;QD=14.7;ReadPosRankSum=-1.306;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434132    GT:AD:DP:GQ:PL    0/1:14,17:31:99:486,0,347
22    43606143    rs5759217    C    T    230.53    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.246;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.584;QD=10.48;ReadPosRankSum=0.176;SNPEFF_AMINO_ACID_CHANGE=A459;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43606049_43606246;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381243    GT:AD:DP:GQ:PL    0/1:11,11:22:99:261,0,322
22    43610207    rs138993    A    G    355.21    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=2.466;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.39;MQ0=0;MQRankSum=1.069;QD=12.25;ReadPosRankSum=-0.065;SNPEFF_AMINO_ACID_CHANGE=S278P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43610096_43610257;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381243    GT:AD:DP:GQ:PL    0/1:15,14:29:99:385,0,492
22    43614223    rs9623782    C    G    709.97    PASS    AB=0.59;AC=1;AF=0.50;AN=2;BaseQRankSum=0.799;DB;DP=61;Dels=0.0;FS=1.181;HRun=0;HaplotypeScore=0.9999;MQ=59.62;MQ0=0;MQRankSum=-0.99;QD=11.64;ReadPosRankSum=0.873;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360835    GT:AD:DP:GQ:PL    0/1:36,25:61:99:740,0,1102
22    43614316    rs9620123    C    G    1318    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=2.039;DB;DP=106;Dels=0.0;FS=3.631;HRun=1;HaplotypeScore=0.9159;MQ=59.21;MQ0=0;MQRankSum=0.125;QD=12.43;ReadPosRankSum=0.44;SNPEFF_AMINO_ACID_CHANGE=A242;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43614261_43614464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381243    GT:AD:DP:GQ:PL    0/1:56,50:106:99:1348,0,1607
22    43614588    rs5759218    A    G    92.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360835    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
22    43614601    rs5759219    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360835    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
22    43619062    rs2071726    C    G    450.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=21.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360835    GT:AD:DP:GQ:PL    1/1:0,21:21:42.11:484,42,0
22    43619404    rs6003115    C    G    79.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360835    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
22    43623395    rs129415    C    G    290.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=G398R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43623380_43623502;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360835    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:324,27,0
22    43627728    rs735703    G    A    34.37    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.72;QD=5.73;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360835    GT:AD:DP:GQ:PL    0/1:4,2:6:64.36:64,0,113
22    43651421    rs139029    G    A    114.87    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.3;QD=16.41;ReadPosRankSum=0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290460    GT:AD:DP:GQ:PL    0/1:3,4:7:82.57:145,0,83
22    43654466    rs733181    G    A    142.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.951;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.676;QD=14.26;ReadPosRankSum=1.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290460    GT:AD:DP:GQ:PL    0/1:5,5:10:99:173,0,167
22    43716324    rs3213584    T    C    46.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCUBE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000290460    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:78,6,0
22    43870743    rs34665977    G    A    1613.07    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.777;DB;DP=149;Dels=0.0;FS=6.798;HRun=0;HaplotypeScore=1.9849;MQ=59.41;MQ0=0;MQRankSum=-1.059;QD=10.83;ReadPosRankSum=-0.11;SNPEFF_AMINO_ACID_CHANGE=P156;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43870616_43870841;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPED1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000545165    GT:AD:DP:GQ:PL    0/1:91,57:149:99:1643,0,2863
22    43898315    rs28485670    A    G    42.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414469    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
22    43898650    rs28711226    C    T    344.02    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.286;DB;DP=30;Dels=0.0;FS=1.69;HRun=0;HaplotypeScore=0.0;MQ=59.23;MQ0=0;MQRankSum=0.024;QD=11.47;ReadPosRankSum=-0.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPPED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414469    GT:AD:DP:GQ:PL    0/1:16,14:30:99:374,0,352
22    43926852    .    C    T    141.62    PASS    AB=0.63;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.329;DP=46;Dels=0.0;FS=20.016;HRun=0;HaplotypeScore=0.0;MQ=51.88;MQ0=0;MQRankSum=-4.506;QD=3.08;ReadPosRankSum=-2.587;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:29,17:46:99:172,0,883
22    43926857    rs76475527    CAAGAAGGGGT    C    1152.97    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=5.557;DB;DP=48;FS=19.319;HRun=0;HaplotypeScore=471.0514;IndelType=D;MQ=52.51;MQ0=0;MQRankSum=-4.614;QD=24.02;ReadPosRankSum=-1.762;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:32,16:48:99:1192,0,4721
22    43930825    rs4585129    C    T    228.51    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=1.919;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=10.88;ReadPosRankSum=-0.109;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:13,8:21:99:259,0,458
22    43936219    rs61995890    C    T    552.17    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=3.828;DB;DP=53;Dels=0.0;FS=7.248;HRun=1;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;MQRankSum=-0.045;QD=10.42;ReadPosRankSum=1.064;SNPEFF_AMINO_ACID_CHANGE=E1071K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43936007_43936237;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396231    GT:AD:DP:GQ:PL    0/1:32,21:53:99:582,0,883
22    43976396    rs9614382    G    A    2252.85    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=2.395;DB;DP=154;Dels=0.0;FS=5.497;HRun=1;HaplotypeScore=0.8667;MQ=59.52;MQ0=0;MQRankSum=0.236;QD=14.63;ReadPosRankSum=-1.135;SNPEFF_AMINO_ACID_CHANGE=A1059V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_43976344_43976539;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:78,75:154:99:2283,0,2387
22    43976675    rs4823114    G    A    245.01    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.386;DB;DP=14;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.9578;MQ=60.0;MQ0=0;MQRankSum=0.471;QD=17.5;ReadPosRankSum=-0.627;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:6,8:14:99:275,0,191
22    43985929    rs141325172    CAT    C    1153.60    PASS    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=5.229;DB;DP=60;FS=10.345;HRun=0;HaplotypeScore=187.7644;IndelType=D;MQ=60.16;MQ0=0;MQRankSum=0.296;QD=19.23;ReadPosRankSum=0.675;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:29,31:60:99:1193,0,1397
22    44004305    rs12485238    C    G    272.57    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.282;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.282;QD=9.4;ReadPosRankSum=-0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:17,12:29:99:303,0,586
22    44022578    rs110618    C    A    332.93    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=2.849;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.8633;MQ=58.84;MQ0=0;MQRankSum=0.454;QD=16.65;ReadPosRankSum=1.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:9,11:20:99:363,0,201
22    44028173    .    TC    T    188.90    PASS    AB=0.782;AC=1;AF=0.50;AN=2;BaseQRankSum=3.575;DP=43;FS=35.569;HRun=1;HaplotypeScore=397.4545;IndelType=D;MQ=47.39;MQ0=0;MQRankSum=-1.312;QD=4.39;ReadPosRankSum=-4.089;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:31,12:43:99:228,0,167
22    44028202    rs137726    G    A    81.04    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.767;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=47.76;MQ0=0;MQRankSum=-0.852;QD=2.61;ReadPosRankSum=-1.434;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:17,14:31:99:111,0,440
22    44028320    rs137727    T    C    154.46    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=5.441;HRun=0;HaplotypeScore=0.5784;MQ=56.62;MQ0=0;MQRankSum=0.922;QD=22.07;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:2,5:7:21.95:184,0,22
22    44031239    rs137732    G    A    77.24    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=19.31;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:1,3:4:29.72:107,0,30
22    44074076    rs34240326    G    GA    159.84    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.088;DB;DP=22;FS=0.0;HRun=15;HaplotypeScore=118.8634;IndelType=I;MQ=57.3;MQ0=0;MQRankSum=-0.4;QD=7.27;ReadPosRankSum=1.111;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:10,10:22:79.37:199,0,79
22    44079438    rs2071716    A    T    31.35    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.198;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=4.48;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404038    GT:AD:DP:GQ:PL    0/1:5,2:7:61.34:61,0,181
22    44079452    rs137793    C    G    305.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000404038    GT:AD:DP:GQ:PL    1/1:0,9:9:27.07:338,27,0
22    44079645    rs8141450    T    C    1314.32    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.518;DB;DP=100;Dels=0.0;FS=6.886;HRun=0;HaplotypeScore=1.9258;MQ=59.77;MQ0=0;MQRankSum=-0.742;QD=13.14;ReadPosRankSum=0.705;SNPEFF_AMINO_ACID_CHANGE=A259;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44079627_44079735;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396231    GT:AD:DP:GQ:PL    0/1:54,46:100:99:1344,0,1634
22    44079680    rs137794    G    A    1612.80    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.759;DB;DP=113;Dels=0.0;FS=1.542;HRun=0;HaplotypeScore=2.246;MQ=59.8;MQ0=0;MQRankSum=-0.877;QD=14.27;ReadPosRankSum=-0.393;SNPEFF_AMINO_ACID_CHANGE=H248Y;SNPEFF_CODON_CHANGE=Cac/Tac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44079627_44079735;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396231    GT:AD:DP:GQ:PL    0/1:53,60:113:99:1643,0,1576
22    44083327    rs35384776    G    GT    81.46    PASS    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=0.201;DB;DP=22;FS=0.0;HRun=17;HaplotypeScore=116.5781;IndelType=I;MQ=53.36;MQ0=0;MQRankSum=0.068;QD=3.7;ReadPosRankSum=-0.299;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262726    GT:AD:DP:GQ:PL    0/1:12,6:22:31.28:120,0,31
22    44083442    rs5764214    T    C    545.16    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=53;Dels=0.0;FS=4.037;HRun=0;HaplotypeScore=0.9916;MQ=58.68;MQ0=0;MQRankSum=-0.67;QD=10.29;ReadPosRankSum=-1.425;SNPEFF_AMINO_ACID_CHANGE=T199A;SNPEFF_CODON_CHANGE=Act/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44083351_44083461;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396231    GT:AD:DP:GQ:PL    0/1:28,25:53:99:575,0,858
22    44112845    rs5764234    C    T    815.77    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=3.608;DB;DP=55;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=59.16;MQ0=0;MQRankSum=0.561;QD=14.83;ReadPosRankSum=0.739;SNPEFF_AMINO_ACID_CHANGE=S103;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44112728_44112852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396231    GT:AD:DP:GQ:PL    0/1:25,30:55:99:846,0,667
22    44177972    rs1894631    A    G    284.10    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=1.66;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.186;QD=10.93;ReadPosRankSum=0.079;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=EFCAB6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485142    GT:AD:DP:GQ:PL    0/1:16,10:26:99:314,0,564
22    44229492    rs138069    G    C    455.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.9916;MQ=58.63;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249130    GT:AD:DP:GQ:PL    1/1:0,17:17:39.12:489,39,0
22    44229508    rs138070    G    A    56.18    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=0.85;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.15;QD=2.96;ReadPosRankSum=-0.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249130    GT:AD:DP:GQ:PL    0/1:15,4:19:86.17:86,0,375
22    44234933    rs138073    C    T    221.19    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=2.166;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.895;QD=18.43;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SULT4A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000249130    GT:AD:DP:GQ:PL    0/1:4,8:12:71.36:251,0,71
22    44277406    rs55905376    C    T    30.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=4.771;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=5.09;ReadPosRankSum=0.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438734    GT:AD:DP:GQ:PL    0/1:4,2:6:60.52:61,0,144
22    44282503    rs138131    C    T    120.94    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.221;QD=15.12;ReadPosRankSum=1.221;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216177    GT:AD:DP:GQ:PL    0/1:3,5:8:52.36:151,0,52
22    44285428    rs62226145    G    A    713.51    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.764;DB;DP=46;Dels=0.0;FS=3.221;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.398;QD=15.51;ReadPosRankSum=0.535;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216177    GT:AD:DP:GQ:PL    0/1:22,24:46:99:744,0,704
22    44285667    rs713864    G    A    196.45    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=1.588;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5345;MQ=60.0;MQ0=0;MQRankSum=0.106;QD=10.91;ReadPosRankSum=-0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216177    GT:AD:DP:GQ:PL    0/1:9,8:18:99:226,0,303
22    44285765    rs2017461    A    G    357.48    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.127;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.731;QD=11.53;ReadPosRankSum=-0.573;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216177    GT:AD:DP:GQ:PL    0/1:16,15:31:99:387,0,412
22    44287062    rs2071884    A    G    125.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.573;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.488;QD=6.26;ReadPosRankSum=-0.271;SNPEFF_AMINO_ACID_CHANGE=D102;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44286942_44287174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216177    GT:AD:DP:GQ:PL    0/1:12,8:20:99:155,0,336
22    44322922    rs2076213    T    G    547.54    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.053;DB;DP=42;Dels=0.0;FS=2.587;HRun=1;HaplotypeScore=0.0;MQ=59.45;MQ0=0;MQRankSum=2.053;QD=13.04;ReadPosRankSum=-1.574;SNPEFF_AMINO_ACID_CHANGE=C95G;SNPEFF_CODON_CHANGE=Tgc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44322815_44323047;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423180    GT:AD:DP:GQ:PL    0/1:20,22:42:99:578,0,633
22    44324676    rs139051    A    G    1151.23    PASS    AB=0.366;AC=1;AF=0.50;AN=2;BaseQRankSum=2.632;DB;DP=71;Dels=0.0;FS=8.414;HRun=0;HaplotypeScore=0.0;MQ=58.69;MQ0=0;MQRankSum=-1.08;QD=16.21;ReadPosRankSum=0.436;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216180    GT:AD:DP:GQ:PL    0/1:26,45:71:99:1181,0,824
22    44324727    rs738409    C    G    918.57    PASS    AB=0.553;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.11;MQ0=0;MQRankSum=0.552;QD=10.81;ReadPosRankSum=1.109;SNPEFF_AMINO_ACID_CHANGE=I144M;SNPEFF_CODON_CHANGE=atC/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44324704_44324769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423180    GT:AD:DP:GQ:PL    0/1:47,38:85:99:949,0,1385
22    44324730    rs738408    C    T    851.97    PASS    AB=0.551;AC=1;AF=0.50;AN=2;BaseQRankSum=2.445;DB;DP=89;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8321;MQ=58.19;MQ0=0;MQRankSum=-0.507;QD=9.57;ReadPosRankSum=1.085;SNPEFF_AMINO_ACID_CHANGE=P145;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44324704_44324769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423180    GT:AD:DP:GQ:PL    0/1:49,40:89:99:882,0,1402
22    44324855    rs3747207    G    A    201.92    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.967;DB;DP=20;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.5784;MQ=57.66;MQ0=0;MQRankSum=2.43;QD=10.1;ReadPosRankSum=0.964;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216180    GT:AD:DP:GQ:PL    0/1:12,8:20:99:232,0,391
22    44328730    rs4823173    G    A    151.15    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.653;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.151;QD=8.4;ReadPosRankSum=-0.653;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216180    GT:AD:DP:GQ:PL    0/1:12,6:18:99:181,0,289
22    44329078    rs2076211    C    T    172.86    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.001;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=-0.248;QD=19.21;ReadPosRankSum=0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478713    GT:AD:DP:GQ:PL    0/1:3,6:9:95.69:203,0,96
22    44332878    rs34879941    C    T    193.08    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.573;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=61.19;MQ0=0;MQRankSum=-1.001;QD=21.45;ReadPosRankSum=-0.573;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478713    GT:AD:DP:GQ:PL    0/1:3,6:9:95.32:223,0,95
22    44332888    rs36038527    T    TC    136.10    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=1.453;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=38.8532;IndelType=I;MQ=60.98;MQ0=0;MQRankSum=0.103;QD=12.37;ReadPosRankSum=1.951;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478713    GT:AD:DP:GQ:PL    0/1:6,5:11:99:175,0,149
22    44333172    rs2072906    A    G    366.44    PASS    AB=0.36;AC=1;AF=0.50;AN=2;BaseQRankSum=0.934;DB;DP=25;Dels=0.0;FS=1.721;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.651;QD=14.66;ReadPosRankSum=-0.878;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478713    GT:AD:DP:GQ:PL    0/1:9,16:25:99:396,0,273
22    44335744    rs2073081    T    C    97.83    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.729;QD=10.87;ReadPosRankSum=0.729;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497129    GT:AD:DP:GQ:PL    0/1:5,4:9:99:128,0,180
22    44342116    rs2294918    A    G    2049.80    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.748;DB;DP=137;Dels=0.0;FS=0.685;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=0.942;QD=14.96;ReadPosRankSum=-1.414;SNPEFF_AMINO_ACID_CHANGE=K430E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44342034_44342941;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423180    GT:AD:DP:GQ:PL    0/1:64,73:137:99:2080,0,1962
22    44358997    rs16991236    A    G    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
22    44364594    rs5764434    C    T    358.62    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=38;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.665;QD=9.44;ReadPosRankSum=1.005;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406117    GT:AD:DP:GQ:PL    0/1:22,16:38:99:389,0,676
22    44364794    rs2273031    T    C    82.04    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.072;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=8.2;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406117    GT:AD:DP:GQ:PL    0/1:6,4:10:99:112,0,214
22    44368122    rs3761472    A    G    347.06    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.199;DB;DP=32;Dels=0.0;FS=1.566;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=0.681;QD=10.85;ReadPosRankSum=1.265;SNPEFF_AMINO_ACID_CHANGE=D110G;SNPEFF_CODON_CHANGE=gAc/gGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44368116_44368222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    0/1:20,12:32:99:377,0,580
22    44368204    rs3177036    A    G    184.12    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=37;Dels=0.0;FS=3.43;HRun=2;HaplotypeScore=0.0;MQ=59.5;MQ0=0;MQRankSum=1.36;QD=4.98;ReadPosRankSum=-0.547;SNPEFF_AMINO_ACID_CHANGE=G137;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44368116_44368222;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    0/1:26,11:37:99:214,0,793
22    44368728    rs34361615    A    AT    516.05    PASS    AB=0.789;AC=1;AF=0.50;AN=2;BaseQRankSum=5.934;DB;DP=101;FS=3.073;HRun=12;HaplotypeScore=487.6368;IndelType=I;MQ=57.92;MQ0=0;MQRankSum=-0.741;QD=5.11;ReadPosRankSum=-2.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    0/1:74,24:101:99:555,0,905
22    44372069    rs2073084    G    A    583.66    PASS    AB=0.432;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.383;DB;DP=37;Dels=0.0;FS=13.23;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.628;QD=15.77;ReadPosRankSum=0.383;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493161    GT:AD:DP:GQ:PL    0/1:16,21:37:99:614,0,494
22    44372190    rs2073085    C    T    176.11    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.244;QD=14.68;ReadPosRankSum=-0.831;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493161    GT:AD:DP:GQ:PL    0/1:5,7:12:99:206,0,116
22    44372632    rs14315    C    T    163.35    PASS    AB=0.636;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.181;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.15;MQ0=0;MQRankSum=-0.76;QD=7.43;ReadPosRankSum=-1.629;SNPEFF_AMINO_ACID_CHANGE=H260;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44372630_44372701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    0/1:14,8:22:99:193,0,363
22    44377442    rs4823182    A    G    108.21    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.876;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.841;MQ=57.39;MQ0=0;MQRankSum=1.881;QD=12.02;ReadPosRankSum=1.159;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    0/1:5,4:9:99:138,0,160
22    44379740    rs2294923    C    A    259.78    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.7;DB;DP=45;Dels=0.0;FS=3.227;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=0.145;QD=5.77;ReadPosRankSum=0.092;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    0/1:33,12:45:99:290,0,1163
22    44379822    rs10452    T    C    893.29    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.866;DB;DP=104;Dels=0.0;FS=5.603;HRun=0;HaplotypeScore=3.8562;MQ=59.78;MQ0=0;MQRankSum=-0.557;QD=8.59;ReadPosRankSum=0.6;SNPEFF_AMINO_ACID_CHANGE=L129;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44379813_44379880;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396202    GT:AD:DP:GQ:PL    0/1:67,36:104:99:923,0,2079
22    44379838    rs8418    A    G    1016.52    PASS    AB=0.617;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.281;DB;DP=107;Dels=0.0;FS=11.67;HRun=0;HaplotypeScore=2.1434;MQ=59.78;MQ0=0;MQRankSum=0.07;QD=9.5;ReadPosRankSum=0.295;SNPEFF_AMINO_ACID_CHANGE=I135V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44379813_44379880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396202    GT:AD:DP:GQ:PL    0/1:66,41:107:99:1047,0,2033
22    44380009    rs9626079    A    G    131.26    PASS    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=2.606;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.453;QD=8.2;ReadPosRankSum=-0.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    0/1:11,5:16:99:161,0,377
22    44395389    rs2281292    A    C    537.72    PASS    AB=0.523;AC=1;AF=0.50;AN=2;BaseQRankSum=1.504;DB;DP=44;Dels=0.0;FS=3.569;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.634;QD=12.22;ReadPosRankSum=0.987;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAMM50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350028    GT:AD:DP:GQ:PL    0/1:23,21:44:99:568,0,806
22    44395451    rs1007863    T    C    1080.41    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.371;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.7067;MQ=57.51;MQ0=0;MQRankSum=1.053;QD=11.25;ReadPosRankSum=0.064;SNPEFF_AMINO_ACID_CHANGE=W37R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44395414_44395553;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000406477    GT:AD:DP:GQ:PL    0/1:58,38:96:99:1110,0,1771
22    44465036    rs73888833    C    T    270.08    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.146;DB;DP=24;Dels=0.0;FS=10.041;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.083;QD=11.25;ReadPosRankSum=0.732;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338758    GT:AD:DP:GQ:PL    0/1:14,10:24:99:300,0,428
22    44489868    rs1983609    T    C    2558.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6517;MQ=59.5;MQ0=0;QD=27.81;SNPEFF_AMINO_ACID_CHANGE=V21A;SNPEFF_CODON_CHANGE=gTg/gCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44489808_44489897;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000404989    GT:AD:DP:GQ:PL    1/1:0,92:92:99:2591,208,0
22    44489896    rs738479    T    C    1985.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.3;MQ0=0;QD=30.08;SNPEFF_AMINO_ACID_CHANGE=L100;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44489808_44489897;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000406477    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2019,171,0
22    44514809    rs5764541    C    T    162.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338758    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:195,15,0
22    44515275    rs742549    T    C    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338758    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
22    44515806    rs761166    G    C    121.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338758    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:154,12,0
22    44527211    rs6006671    G    T    155.20    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=25.87;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338758    GT:AD:DP:GQ:PL    0/1:1,5:6:20.52:185,0,21
22    44527227    rs2281269    T    G    171.34    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.572;QD=21.42;ReadPosRankSum=1.067;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338758    GT:AD:DP:GQ:PL    0/1:2,6:8:56.47:201,0,56
22    44535904    rs11270419    G    GCTTTCTGGCTGGCTCTGTCCCTCATCCTCCA    5172.47    PASS    AB=0.9;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.063;DB;DP=45;FS=0.0;HRun=0;HaplotypeScore=895.4073;IndelType=I;MQ=49.7;MQ0=0;MQRankSum=-4.056;QD=114.94;ReadPosRankSum=0.697;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495824    GT:AD:DP:GQ:PL    0/1:40,2:45:99:5172,0,2616
22    44543436    rs6006677    T    G    36.41    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;MQRankSum=1.026;QD=6.07;ReadPosRankSum=-1.026;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338758    GT:AD:DP:GQ:PL    0/1:2,3:6:57.57:66,0,58
22    44564402    rs6006687    G    A    458.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=32.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000484345    GT:AD:DP:GQ:PL    1/1:0,14:14:39.11:492,39,0
22    44586522    rs2272942    C    T    2314.46    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.79;DB;DP=71;Dels=0.0;FS=3.671;HRun=1;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=-1.859;QD=32.6;ReadPosRankSum=1.512;SNPEFF_AMINO_ACID_CHANGE=V160;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44586431_44586546;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415224    GT:AD:DP:GQ:PL    1/1:2,69:71:99:2347,139,0
22    44594476    rs139151    T    C    994.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415224    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:1027,75,0
22    44594584    rs139152    C    G    1288.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.41;MQ0=0;QD=33.04;SNPEFF_AMINO_ACID_CHANGE=P265;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44594501_44594602;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415224    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1321,99,0
22    44602172    rs3842785    T    C    553.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.95;MQ0=0;QD=32.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415224    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:587,45,0
22    44602229    rs139186    A    C    950.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.1;MQ0=0;QD=30.66;SNPEFF_AMINO_ACID_CHANGE=R307;SNPEFF_CODON_CHANGE=Agg/Cgg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44602197_44603034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PARVG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000415224    GT:AD:DP:GQ:PL    1/1:0,31:31:75.22:983,75,0
22    44681612    rs135388    A    G    5555.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=167;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.0311;MQ=59.86;MQ0=0;QD=33.27;SNPEFF_AMINO_ACID_CHANGE=L99;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44681308_44681625;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1644;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381176    GT:AD:DP:GQ:PL    1/1:0,167:167:99:5555,439,0
22    44681832    rs135387    G    A    35.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIAA1644;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381176    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
22    44761884    rs112900724    G    A    299.87    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=24;Dels=0.0;FS=3.755;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.142;QD=12.49;ReadPosRankSum=0.146;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-32I10.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406912    GT:AD:DP:GQ:PL    0/1:10,14:24:99:330,0,289
22    44965113    rs138592    T    C    106.56    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.876;QD=11.84;ReadPosRankSum=-0.361;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCRNA00207;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334566    GT:AD:DP:GQ:PL    0/1:5,4:9:99:137,0,176
22    44965320    rs138593    G    A    490.11    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.988;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6545;MQ=59.38;MQ0=0;MQRankSum=-0.532;QD=13.25;ReadPosRankSum=0.714;SNPEFF_AMINO_ACID_CHANGE=G12E;SNPEFF_CODON_CHANGE=gGa/gAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_44965219_44965321;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCRNA00207;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334566    GT:AD:DP:GQ:PL    0/1:19,18:37:99:520,0,642
22    44967892    rs182008537    C    G    48.97    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.652;DB;DP=9;Dels=0.0;FS=3.522;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.361;QD=5.44;ReadPosRankSum=-0.361;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCRNA00207;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460077    GT:AD:DP:GQ:PL    0/1:5,4:9:78.96:79,0,185
22    45132491    rs132409    G    A    183.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRR5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000403696    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:216,18,0
22    45198009    rs2239813    A    G    236.38    PASS    AB=0.69;AC=1;AF=0.50;AN=2;BaseQRankSum=1.956;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.024;QD=8.15;ReadPosRankSum=0.354;SNPEFF_AMINO_ACID_CHANGE=P166;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45197957_45198044;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000389773    GT:AD:DP:GQ:PL    0/1:20,9:29:99:266,0,638
22    45210666    rs2071758    G    A    317.38    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.85;DB;DP=27;Dels=0.0;FS=4.075;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.025;QD=11.75;ReadPosRankSum=-0.913;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412433    GT:AD:DP:GQ:PL    0/1:16,11:27:99:347,0,476
22    45218223    rs136662    C    T    1743.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1776,135,0
22    45221423    rs3209476    A    T    219.17    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=0.83;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.537;QD=12.89;ReadPosRankSum=0.537;SNPEFF_AMINO_ACID_CHANGE=P182;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45221363_45221473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:7,10:17:99:249,0,184
22    45243780    rs9626578    G    A    129.26    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=0.143;DB;DP=11;Dels=0.0;FS=7.404;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.143;QD=11.75;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:5,6:11:99:159,0,168
22    45244001    rs9626251    C    T    71.96    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.956;QD=8.99;ReadPosRankSum=0.684;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:5,3:8:99:102,0,120
22    45244641    rs11703013    G    T    72.04    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=0.55;QD=10.29;ReadPosRankSum=1.754;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:3,4:7:80.72:102,0,81
22    45244930    rs2269543    C    T    1600.23    PASS    AB=0.496;AC=1;AF=0.50;AN=2;BaseQRankSum=5.126;DB;DP=130;Dels=0.0;FS=0.674;HRun=1;HaplotypeScore=3.5825;MQ=59.0;MQ0=0;MQRankSum=-1.037;QD=12.31;ReadPosRankSum=0.603;SNPEFF_AMINO_ACID_CHANGE=L289;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45244812_45244940;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:64,65:130:99:1630,0,1671
22    45255436    rs4504112    C    G    62.29    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=6.021;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.727;QD=15.57;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:1,3:4:30.64:92,0,31
22    45255460    rs4336044    G    A    159    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=26.5;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:1,5:6:24.17:189,0,24
22    45255484    rs4510320    A    C    114.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:147,12,0
22    45255727    rs2349855    G    C    220.35    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.578;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=59.07;MQ0=0;MQRankSum=-0.194;QD=8.81;ReadPosRankSum=-0.305;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:15,10:25:99:250,0,499
22    45255779    rs2882262    A    G    34.19    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.55;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=1.3;QD=4.27;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:4,3:8:64.18:64,0,140
22    45255849    rs141313257    C    G    35.69    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=11.9;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336963    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:66,0,32
22    45258495    rs8777    A    G    292.74    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.385;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.11;MQ0=0;MQRankSum=0.256;QD=11.26;ReadPosRankSum=0.513;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469342    GT:AD:DP:GQ:PL    0/1:13,13:26:99:323,0,361
22    45258650    rs6519899    A    C    39.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=13.14;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469342    GT:AD:DP:GQ:PL    0/1:1,2:3:31.62:69,0,32
22    45291833    rs3752467    A    G    382.31    PASS    AB=0.577;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.125;DB;DP=52;Dels=0.0;FS=5.392;HRun=0;HaplotypeScore=0.8321;MQ=59.56;MQ0=0;MQRankSum=0.0;QD=7.35;ReadPosRankSum=-0.216;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313237    GT:AD:DP:GQ:PL    0/1:30,22:52:99:412,0,906
22    45309565    rs73178249    G    A    30.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.922;QD=4.4;ReadPosRankSum=-0.198;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420689    GT:AD:DP:GQ:PL    0/1:5,2:7:60.82:61,0,138
22    45309653    rs3213527    C    T    374.68    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.869;QD=28.82;ReadPosRankSum=-1.159;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420689    GT:AD:DP:GQ:PL    1/1:1,12:13:33.10:408,33,0
22    45312631    rs16993090    A    G    35.65    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=11.88;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF21B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313237    GT:AD:DP:GQ:PL    0/1:1,2:3:33.20:66,0,33
22    45574986    rs9615054    T    G    97.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419387    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:130,9,0
22    45579422    rs6006950    A    G    255.75    PASS    AB=0.703;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.146;DB;DP=37;Dels=0.0;FS=1.558;HRun=1;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=0.316;QD=6.91;ReadPosRankSum=-0.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419387    GT:AD:DP:GQ:PL    0/1:26,11:37:99:286,0,859
22    45680824    rs2255432    A    G    36.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.27;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216211    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:68,6,0
22    45682975    rs2673087    A    G    1097.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216211    GT:AD:DP:GQ:PL    1/1:0,38:38:96.26:1130,96,0
22    45683246    rs2673088    C    T    657.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=31.31;SNPEFF_AMINO_ACID_CHANGE=V134;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45683053_45683332;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216211    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:690,54,0
22    45683304    rs1057353    G    C    420.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.07;SNPEFF_AMINO_ACID_CHANGE=A154P;SNPEFF_CODON_CHANGE=Gca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45683053_45683332;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216211    GT:AD:DP:GQ:PL    1/1:0,14:14:39.10:454,39,0
22    45685002    rs1135360    A    G    1376.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7128;MQ=58.87;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=S183;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45684942_45685024;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216211    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1409,111,0
22    45691594    rs1057356    A    G    524.50    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=0.705;DB;DP=47;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.379;QD=10.93;ReadPosRankSum=0.488;SNPEFF_AMINO_ACID_CHANGE=Q165;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45691441_45691703;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UPK3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000396082    GT:AD:DP:GQ:PL    0/1:28,19:47:99:554,0,865
22    45717859    rs720682    C    T    77.79    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=12.97;ReadPosRankSum=-0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:2,4:6:70.24:108,0,70
22    45718041    rs1473953    A    G    1083.52    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.118;DB;DP=97;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.57;MQ0=0;MQRankSum=-1.274;QD=11.17;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:60,37:97:99:1114,0,1858
22    45719497    rs2142552    C    G    50.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.15;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000424557    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
22    45723584    rs6007590    G    A    87.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
22    45723696    rs6007591    G    C    148.23    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=1.031;DB;DP=11;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=13.48;ReadPosRankSum=-1.532;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:5,6:11:99:178,0,162
22    45723807    rs11556482    G    C    438.38    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=2.469;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.419;QD=14.61;ReadPosRankSum=0.67;SNPEFF_AMINO_ACID_CHANGE=V129L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45723723_45723944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:13,17:30:99:468,0,408
22    45723842    rs17851057    G    A    356.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.042;DB;DP=20;Dels=0.0;FS=1.922;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;MQRankSum=0.81;QD=17.83;ReadPosRankSum=1.196;SNPEFF_AMINO_ACID_CHANGE=R140;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45723723_45723944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:8,12:20:99:387,0,235
22    45723854    rs9615108    C    G    92.63    PASS    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=0.791;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.9;MQ0=0;MQRankSum=-1.634;QD=5.45;ReadPosRankSum=1.528;SNPEFF_AMINO_ACID_CHANGE=V144;SNPEFF_CODON_CHANGE=gtC/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45723723_45723944;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:12,5:17:99:123,0,369
22    45723898    rs62001863    G    A    74.24    MQFilter40    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.347;DB;DP=32;Dels=0.0;FS=15.315;HRun=0;HaplotypeScore=0.8941;MQ=37.96;MQ0=12;MQRankSum=-3.249;QD=2.32;ReadPosRankSum=-1.664;SNPEFF_AMINO_ACID_CHANGE=R159Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45723723_45723944;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:15,17:32:99:104,0,432
22    45723947    rs74676649    A    G    254.84    MQFilter40    AB=0.458;AC=1;AF=0.50;AN=2;BaseQRankSum=0.72;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8177;MQ=21.26;MQ0=27;MQRankSum=1.343;QD=4.32;ReadPosRankSum=-0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    0/1:27,32:59:91.02:285,0,91
22    45723960    rs9614638    G    A    66.28    MQFilter40;QDFilter2    AB=0.838;AC=1;AF=0.50;AN=2;BaseQRankSum=0.209;DB;DP=68;Dels=0.0;FS=2.197;HRun=0;HaplotypeScore=5.4099;MQ=18.89;MQ0=31;MQRankSum=0.476;QD=0.97;ReadPosRankSum=-1.275;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    0/1:57,11:68:96.27:96,0,365
22    45723980    rs13053749    G    A    324.23    MQFilter40    AB=0.175;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=63;Dels=0.0;FS=2.392;HRun=0;HaplotypeScore=0.9933;MQ=15.62;MQ0=30;MQRankSum=-0.146;QD=5.07;ReadPosRankSum=1.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    0/1:11,52:63:47.76:354,0,48
22    45724002    rs13054754    C    T    224.30    MQFilter40    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=0.412;DB;DP=51;Dels=0.0;FS=6.264;HRun=0;HaplotypeScore=0.0;MQ=14.41;MQ0=24;MQRankSum=1.82;QD=4.4;ReadPosRankSum=0.558;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    0/1:28,23:51:93.51:254,0,94
22    45724084    rs67384847    C    T    47.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=15.21;MQ0=13;QD=2.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    1/1:7,11:18:9:80,9,0
22    45724111    rs67359070    A    G    54.47    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=19.64;MQ0=7;MQRankSum=0.736;QD=4.19;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    1/1:4,9:13:9:86,9,0
22    45724144    rs13054105    G    A    73.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=9.25;MQ0=19;QD=2.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    1/1:4,22:26:11.98:106,12,0
22    45724166    rs2016062    C    T    42.97    MQFilter40;QDFilter2    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.198;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=8.47;MQ0=24;MQRankSum=0.198;QD=1.39;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    0/1:17,14:31:9.68:73,0,10
22    45724193    rs2016063    A    G    105.20    MQFilter40    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.546;DB;DP=31;Dels=0.0;FS=8.451;HRun=0;HaplotypeScore=0.0;MQ=20.59;MQ0=21;MQRankSum=1.386;QD=3.39;ReadPosRankSum=0.895;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    0/1:10,20:31:16.64:135,0,17
22    45724226    rs9614641    G    A    217.75    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=1.423;DB;DP=25;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.0;MQ=29.44;MQ0=14;MQRankSum=-1.739;QD=8.71;ReadPosRankSum=1.423;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    0/1:5,20:25:9.37:248,0,9
22    45724248    rs3859890    C    T    215.29    MQFilter40    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.7;MQ0=6;MQRankSum=0.817;QD=11.33;ReadPosRankSum=0.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427777    GT:AD:DP:GQ:PL    0/1:8,11:19:99:245,0,109
22    45726345    rs7285172    A    G    230.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405673    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:263,21,0
22    45728163    rs67515296    CCTT    C    352.17    PASS    AB=0.565;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=13;FS=0.0;HRun=0;HaplotypeScore=57.0664;IndelType=D;MQ=57.13;MQ0=0;MQRankSum=0.185;QD=27.09;ReadPosRankSum=-0.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405673    GT:AD:DP:GQ:PL    0/1:3,10:13:99:391,0,172
22    45728370    rs6007594    G    A    1237.82    PASS    AB=0.561;AC=1;AF=0.50;AN=2;BaseQRankSum=1.267;DB;DP=98;Dels=0.0;FS=0.796;HRun=0;HaplotypeScore=3.1781;MQ=58.58;MQ0=0;MQRankSum=-0.439;QD=12.63;ReadPosRankSum=-0.091;SNPEFF_AMINO_ACID_CHANGE=R239H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45728306_45728591;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:55,43:98:99:1268,0,1592
22    45728632    rs111420586    C    CTT    316.67    PASS    AB=0.843;AC=1;AF=0.50;AN=2;BaseQRankSum=0.273;DB;DP=43;FS=5.547;HRun=12;HaplotypeScore=222.8609;IndelType=I;MQ=55.54;MQ0=0;MQRankSum=-1.366;QD=7.36;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405673    GT:AD:DP:GQ:PL    0/1:32,5:43:99:356,0,364
22    45731050    rs2350629    A    G    261.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.8;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459849    GT:AD:DP:GQ:PL    1/1:0,11:11:27.04:295,27,0
22    45731182    rs738176    C    T    733.85    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.628;DB;DP=36;Dels=0.0;FS=1.421;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.621;QD=20.38;ReadPosRankSum=0.487;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459849    GT:AD:DP:GQ:PL    0/1:12,24:36:99:764,0,330
22    45732328    rs11704481    G    A    57    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=0.423;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=58.2;MQ0=0;MQRankSum=0.592;QD=4.38;ReadPosRankSum=1.775;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000459849    GT:AD:DP:GQ:PL    0/1:10,3:13:87:87,0,305
22    45736153    rs3827393    G    A    398.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487732    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:431,33,0
22    45736434    rs1056322    C    G    76.68    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.34;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000405548    GT:AD:DP:GQ:PL    0/1:2,3:5:66.91:107,0,67
22    45740224    rs3747240    G    A    330.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:364,27,0
22    45741543    rs5765260    G    C    183.55    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.89;MQ0=0;MQRankSum=-0.326;QD=8.74;ReadPosRankSum=-0.616;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM118A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216214    GT:AD:DP:GQ:PL    0/1:13,8:21:99:214,0,484
22    45748284    rs11375006    C    CT    1185.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=1;HaplotypeScore=69.5907;IndelType=I;MQ=60.7;MQ0=0;QD=40.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    1/1:1,28:29:84.28:1228,84,0
22    45748339    rs5765275    A    G    486.99    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.528;DB;DP=43;Dels=0.0;FS=1.216;HRun=1;HaplotypeScore=0.0;MQ=59.94;MQ0=0;MQRankSum=-1.137;QD=11.33;ReadPosRankSum=0.379;SNPEFF_AMINO_ACID_CHANGE=A1139;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45748331_45748482;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:24,19:43:99:517,0,766
22    45749983    rs5764698    G    T    1246.28    PASS    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.966;DB;DP=101;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=57.47;MQ0=0;MQRankSum=1.194;QD=12.22;ReadPosRankSum=-0.526;SNPEFF_AMINO_ACID_CHANGE=L1050M;SNPEFF_CODON_CHANGE=Ctg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45749858_45750012;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:50,51:101:99:1276,0,1519
22    45751231    rs9614462    G    A    35.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=8.9;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:2,2:4:65.59:66,0,72
22    45754517    rs5764701    G    T    600.98    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=3.661;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.091;QD=18.21;ReadPosRankSum=-0.127;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:14,19:33:99:631,0,401
22    45754558    rs5765281    A    G    940.49    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.467;DB;DP=65;Dels=0.0;FS=1.485;HRun=0;HaplotypeScore=3.288;MQ=59.29;MQ0=0;MQRankSum=0.493;QD=14.47;ReadPosRankSum=-0.428;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:30,35:65:99:970,0,976
22    45755666    rs1012493    C    T    697.37    PASS    AB=0.457;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.963;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=1.478;QD=15.16;ReadPosRankSum=0.904;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:21,25:46:99:727,0,559
22    45756020    rs1012494    C    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    1/1:1,3:4:6.02:83,6,0
22    45757987    rs5764704    C    T    421.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    1/1:0,12:12:36.10:454,36,0
22    45757999    rs2072717    C    T    105.19    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=1.532;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.29;MQ0=0;MQRankSum=-0.387;QD=9.56;ReadPosRankSum=0.387;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:6,5:11:99:135,0,179
22    45758758    rs719925    T    C    564.71    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=1.899;DB;DP=37;Dels=0.0;FS=1.289;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=1.079;QD=15.26;ReadPosRankSum=0.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:18,19:37:99:595,0,600
22    45767421    rs56174639    C    T    1227.30    PASS    AB=0.547;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.516;DB;DP=86;Dels=0.0;FS=2.881;HRun=0;HaplotypeScore=0.9578;MQ=59.41;MQ0=0;MQRankSum=0.13;QD=14.27;ReadPosRankSum=-1.96;SNPEFF_AMINO_ACID_CHANGE=C748Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45767351_45767467;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:47,39:86:99:1257,0,1579
22    45767455    rs136569    A    G    1215.54    PASS    AB=0.518;AC=1;AF=0.50;AN=2;BaseQRankSum=0.376;DB;DP=83;Dels=0.0;FS=10.914;HRun=0;HaplotypeScore=2.9083;MQ=59.72;MQ0=0;MQRankSum=0.051;QD=14.65;ReadPosRankSum=1.378;SNPEFF_AMINO_ACID_CHANGE=L737;SNPEFF_CODON_CHANGE=Tta/Cta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45767351_45767467;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:43,40:83:99:1246,0,1383
22    45767599    rs136570    G    A    453.15    PASS    AB=0.235;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=-0.962;QD=26.66;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:4,13:17:99:483,0,112
22    45767946    rs136572    G    A    159.42    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;MQRankSum=-1.203;QD=17.71;ReadPosRankSum=1.203;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:3,6:9:47.95:189,0,48
22    45779335    rs136585    A    G    856.90    PASS    AB=0.525;AC=1;AF=0.50;AN=2;BaseQRankSum=0.946;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6132;MQ=59.31;MQ0=0;MQRankSum=0.989;QD=14.05;ReadPosRankSum=0.224;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:32,29:61:99:887,0,1024
22    45779553    rs11090629    C    T    366.62    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.842;DB;DP=30;Dels=0.0;FS=2.98;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.064;QD=12.22;ReadPosRankSum=0.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:18,12:30:99:397,0,566
22    45782646    rs136591    C    T    134.26    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.978;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.092;QD=10.33;ReadPosRankSum=1.256;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:8,5:13:99:164,0,293
22    45782903    rs6007010    T    C    1036.91    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=2.852;DB;DP=64;Dels=0.0;FS=6.819;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.387;QD=16.2;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=L585;SNPEFF_CODON_CHANGE=ctA/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45782747_45782926;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:31,33:64:99:1067,0,1013
22    45783093    rs6006737    T    C    54.24    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.72;QD=9.04;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:2,4:6:66.19:84,0,66
22    45785840    rs8138001    A    G    303.80    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.139;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;MQRankSum=0.971;QD=12.15;ReadPosRankSum=-0.139;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:15,10:25:99:334,0,537
22    45789642    rs136603    A    C    1429.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=35.74;SNPEFF_AMINO_ACID_CHANGE=F473V;SNPEFF_CODON_CHANGE=Ttt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45789514_45789721;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1463,108,0
22    45794925    rs79154    C    A    768.19    PASS    AB=0.544;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.275;DB;DP=57;Dels=0.0;FS=1.329;HRun=1;HaplotypeScore=1.7621;MQ=60.0;MQ0=0;MQRankSum=-0.665;QD=13.48;ReadPosRankSum=1.175;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357450    GT:AD:DP:GQ:PL    0/1:31,26:57:99:798,0,906
22    45813433    rs67136035    AT    A    253.41    PASS    AB=0.645;AC=1;AF=0.50;AN=2;BaseQRankSum=3.723;DB;DP=20;FS=0.0;HRun=6;HaplotypeScore=49.996;IndelType=D;MQ=60.54;MQ0=0;MQRankSum=0.684;QD=12.67;ReadPosRankSum=0.836;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIBC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342894    GT:AD:DP:GQ:PL    0/1:9,11:20:99:292,0,288
22    45821887    rs1022477    G    A    504.54    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.396;DB;DP=51;Dels=0.0;FS=13.798;HRun=0;HaplotypeScore=0.0;MQ=59.63;MQ0=0;MQRankSum=-0.068;QD=9.89;ReadPosRankSum=-1.244;SNPEFF_AMINO_ACID_CHANGE=L172;SNPEFF_CODON_CHANGE=ttG/ttA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45821828_45822055;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIBC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342894    GT:AD:DP:GQ:PL    0/1:31,20:51:99:535,0,915
22    45821956    rs1022478    C    G    374.57    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.003;DB;DP=36;Dels=0.0;FS=3.246;HRun=3;HaplotypeScore=1.6208;MQ=60.0;MQ0=0;MQRankSum=-0.96;QD=10.4;ReadPosRankSum=-0.589;SNPEFF_AMINO_ACID_CHANGE=F195L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45821828_45822055;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIBC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342894    GT:AD:DP:GQ:PL    0/1:21,15:36:99:405,0,550
22    45826880    rs2072770    G    A    38.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.358;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.231;QD=6.42;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=R262Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45826780_45826946;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIBC2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000342894    GT:AD:DP:GQ:PL    0/1:3,3:6:68.49:68,0,93
22    45828091    rs35724408    CA    C    64.34    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.368;DB;DP=20;FS=0.0;HRun=14;HaplotypeScore=138.852;IndelType=D;MQ=52.65;MQ0=0;MQRankSum=1.208;QD=3.22;ReadPosRankSum=1.943;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RIBC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466226    GT:AD:DP:GQ:PL    0/1:11,7:20:99:103,0,140
22    45923827    rs136730    A    G    1106.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.62;SNPEFF_AMINO_ACID_CHANGE=Q141R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45923727_45923889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262722    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1140,87,0
22    45924001    rs5845714    T    TG    180.29    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.422;DB;DP=9;FS=0.0;HRun=4;HaplotypeScore=17.9691;IndelType=I;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=20.03;ReadPosRankSum=1.422;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439835    GT:AD:DP:GQ:PL    0/1:3,6:9:75.06:219,0,75
22    45928841    rs136745    G    A    34.01    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.358;QD=6.8;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411478    GT:AD:DP:GQ:PL    0/1:3,2:5:64:64,0,79
22    45929577    rs105199    T    C    433.45    PASS    AB=0.419;AC=1;AF=0.50;AN=2;BaseQRankSum=3.122;DB;DP=31;Dels=0.0;FS=4.316;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;MQRankSum=-0.066;QD=13.98;ReadPosRankSum=-0.155;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411478    GT:AD:DP:GQ:PL    0/1:13,18:31:99:463,0,399
22    45931262    rs2071938    C    T    172.06    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.236;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;MQRankSum=0.088;QD=9.56;ReadPosRankSum=-1.678;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411478    GT:AD:DP:GQ:PL    0/1:9,9:18:99:202,0,289
22    45937061    rs136756    G    A    454.87    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.399;DB;DP=38;Dels=0.0;FS=1.496;HRun=1;HaplotypeScore=1.5572;MQ=60.0;MQ0=0;MQRankSum=0.843;QD=11.66;ReadPosRankSum=0.192;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262722    GT:AD:DP:GQ:PL    0/1:22,16:38:99:485,0,699
22    45937149    rs9682    C    T    679.91    PASS    AB=0.54;AC=1;AF=0.50;AN=2;BaseQRankSum=3.659;DB;DP=50;Dels=0.0;FS=4.041;HRun=1;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=-2.511;QD=13.6;ReadPosRankSum=1.304;SNPEFF_AMINO_ACID_CHANGE=I321;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_45937109_45937252;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262722    GT:AD:DP:GQ:PL    0/1:27,23:50:99:710,0,793
22    45938338    rs5765460    A    G    38.95    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=7.79;ReadPosRankSum=0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460538    GT:AD:DP:GQ:PL    0/1:3,2:5:68.94:69,0,106
22    45942726    rs5765463    G    T    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.23;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262722    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
22    45943203    rs739270    A    G    452.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=32.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262722    GT:AD:DP:GQ:PL    1/1:1,13:14:36.12:485,36,0
22    45961213    rs1118    C    T    37.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FBLN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262722    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:69,6,0
22    46114244    rs2071852    C    T    1233.31    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.11;DB;DP=77;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.8667;MQ=59.4;MQ0=0;MQRankSum=-0.921;QD=16.02;ReadPosRankSum=-0.195;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252934    GT:AD:DP:GQ:PL    0/1:33,44:77:99:1263,0,1040
22    46114398    rs138156    G    T    1363.17    PASS    AB=0.442;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.913;DB;DP=77;Dels=0.0;FS=1.862;HRun=1;HaplotypeScore=0.6651;MQ=59.7;MQ0=0;MQRankSum=0.036;QD=17.7;ReadPosRankSum=-0.631;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000498009    GT:AD:DP:GQ:PL    0/1:34,43:77:99:1393,0,1060
22    46202925    rs3827398    A    G    1426.07    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.732;DB;DP=112;Dels=0.0;FS=4.748;HRun=0;HaplotypeScore=3.5656;MQ=59.59;MQ0=0;MQRankSum=-0.438;QD=12.73;ReadPosRankSum=0.421;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATXN10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252934    GT:AD:DP:GQ:PL    0/1:61,51:112:99:1456,0,2073
22    46345714    rs10448591    C    T    244.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339464    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:277,21,0
22    46346121    rs10448592    G    A    119.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WNT7B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000339464    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
22    46493852    rs3747243    C    T    322.89    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=2.26;DB;DP=25;Dels=0.0;FS=1.68;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=-1.043;QD=12.92;ReadPosRankSum=1.448;SNPEFF_AMINO_ACID_CHANGE=R16C;SNPEFF_CODON_CHANGE=Cgt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46493806_46493890;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIRLET7BHG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360737    GT:AD:DP:GQ:PL    0/1:12,13:25:99:353,0,295
22    46499120    rs9616125    G    C    469.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.28;SNPEFF_AMINO_ACID_CHANGE=L66;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46499072_46499129;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIRLET7BHG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381051    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:502,39,0
22    46501355    rs8139990    G    T    175.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.07;SNPEFF_AMINO_ACID_CHANGE=A92S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46501289_46501903;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIRLET7BHG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381051    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:208,15,0
22    46501373    rs12159652    A    G    123.02    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=9;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.573;QD=13.67;ReadPosRankSum=-0.573;SNPEFF_AMINO_ACID_CHANGE=S98G;SNPEFF_CODON_CHANGE=Agt/Ggt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46501289_46501903;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIRLET7BHG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381051    GT:AD:DP:GQ:PL    0/1:3,6:9:60.69:153,0,61
22    46501426    rs6008215    A    G    436.71    PASS    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=0.029;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.078;QD=16.8;ReadPosRankSum=1.427;SNPEFF_AMINO_ACID_CHANGE=K115;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46501289_46501903;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIRLET7BHG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381051    GT:AD:DP:GQ:PL    0/1:9,17:26:99:467,0,192
22    46505986    rs2474020    T    C    215.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIRLET7BHG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381051    GT:AD:DP:GQ:PL    1/1:0,8:8:21.05:248,21,0
22    46508765    rs731085    C    G    175.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MIRLET7BHG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000435439    GT:AD:DP:GQ:PL    1/1:0,7:7:18.03:209,18,0
22    46677607    rs130642    T    C    1556.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.76;SNPEFF_AMINO_ACID_CHANGE=F185L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46677496_46677615;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TTC38;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000445282    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1589,123,0
22    46722400    rs140054    T    C    803.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_AMINO_ACID_CHANGE=W485R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46722333_46722551;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTSE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361934    GT:AD:DP:GQ:PL    1/1:0,28:28:72.10:836,72,0
22    46724558    rs140053    T    C    853.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=28.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GTSE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466510    GT:AD:DP:GQ:PL    1/1:0,30:30:69.22:886,69,0
22    46765181    rs11273699    G    GTCAGGTCGCCGAC    4900.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=0;HaplotypeScore=241.0971;IndelType=I;MQ=39.84;MQ0=0;QD=168.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468025    GT:AD:DP:GQ:PL    1/1:11,13:29:81.28:4901,81,0
22    46860088    rs3747251    G    C    132.35    PASS    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=0.854;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.151;QD=7.79;ReadPosRankSum=1.457;SNPEFF_AMINO_ACID_CHANGE=A1233;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46859604_46860242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262738    GT:AD:DP:GQ:PL    0/1:11,6:17:99:162,0,354
22    46860223    rs35475907    C    T    362.46    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=1.707;DB;DP=37;Dels=0.0;FS=4.993;HRun=0;HaplotypeScore=1.748;MQ=59.38;MQ0=0;MQRankSum=-0.611;QD=9.8;ReadPosRankSum=0.767;SNPEFF_AMINO_ACID_CHANGE=T1188;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46859604_46860242;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262738    GT:AD:DP:GQ:PL    0/1:23,14:37:99:392,0,681
22    46929359    rs5767248    C    G    149.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262738    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:182,15,0
22    46929692    rs4823561    A    G    1745.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4194;MQ=59.2;MQ0=0;QD=27.27;SNPEFF_AMINO_ACID_CHANGE=C1126R;SNPEFF_CODON_CHANGE=Tgc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46929524_46933067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262738    GT:AD:DP:GQ:PL    1/1:0,63:64:99:1778,150,0
22    46930107    rs8141744    C    T    397.48    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=0.152;DB;DP=41;Dels=0.0;FS=3.279;HRun=1;HaplotypeScore=1.6828;MQ=60.0;MQ0=0;MQRankSum=-0.594;QD=9.69;ReadPosRankSum=0.566;SNPEFF_AMINO_ACID_CHANGE=V987;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46929524_46933067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262738    GT:AD:DP:GQ:PL    0/1:25,16:41:99:427,0,702
22    46931077    rs4823850    G    C    265.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.56;SNPEFF_AMINO_ACID_CHANGE=S664W;SNPEFF_CODON_CHANGE=tCg/tGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46929524_46933067;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262738    GT:AD:DP:GQ:PL    1/1:0,10:10:24.06:299,24,0
22    46931793    rs1009154    G    C    463.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.97;SNPEFF_AMINO_ACID_CHANGE=L425;SNPEFF_CODON_CHANGE=ctC/ctG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46929524_46933067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262738    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:497,36,0
22    46931838    rs1009155    G    A    696    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=S410;SNPEFF_CODON_CHANGE=agC/agT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_46929524_46933067;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CELSR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262738    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:729,60,0
22    47057191    rs2076707    C    T    199.95    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=16;Dels=0.0;FS=6.99;HRun=0;HaplotypeScore=0.9973;MQ=60.0;MQ0=0;MQRankSum=-0.998;QD=12.5;ReadPosRankSum=1.208;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    0/1:8,8:16:99:230,0,288
22    47057197    rs2076708    C    T    222.07    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.674;DB;DP=19;Dels=0.0;FS=3.274;HRun=0;HaplotypeScore=1.984;MQ=60.0;MQ0=0;MQRankSum=0.286;QD=11.69;ReadPosRankSum=1.021;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    0/1:10,9:19:99:252,0,316
22    47058992    rs2542040    T    C    2561.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=59.66;MQ0=0;QD=31.23;SNPEFF_AMINO_ACID_CHANGE=F174;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_47058937_47059069;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2594,199,0
22    47059597    rs2542035    A    G    145.09    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.588;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.259;QD=12.09;ReadPosRankSum=-0.259;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    0/1:6,6:12:99:175,0,212
22    47064164    rs2748338    C    A    167.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
22    47064327    rs135661    T    C    74.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:106,9,0
22    47064665    rs9616088    C    T    476.29    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.185;DB;DP=53;Dels=0.0;FS=4.324;HRun=0;HaplotypeScore=0.7887;MQ=59.56;MQ0=0;MQRankSum=0.477;QD=8.99;ReadPosRankSum=-2.913;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    0/1:32,21:53:99:506,0,1039
22    47064837    rs2076711    A    C    294.81    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.627;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.035;QD=13.4;ReadPosRankSum=-0.951;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    0/1:10,12:22:99:325,0,349
22    47070432    rs2073275    G    C    110.76    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.529;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.0;QD=8.52;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    0/1:8,5:13:99:141,0,250
22    47070747    rs34212133    G    T    162.22    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.485;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;MQRankSum=0.194;QD=11.59;ReadPosRankSum=-0.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    0/1:8,6:14:99:192,0,280
22    47071531    rs2073276    T    C    304.62    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.672;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.0756;MQ=59.14;MQ0=0;MQRankSum=-1.157;QD=11.28;ReadPosRankSum=-0.334;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRAMD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361034    GT:AD:DP:GQ:PL    0/1:15,12:27:99:335,0,439
22    47083010    rs2542014    T    C    256.61    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=0.905;DB;DP=35;Dels=0.0;FS=1.63;HRun=0;HaplotypeScore=0.0;MQ=59.21;MQ0=0;MQRankSum=0.154;QD=7.33;ReadPosRankSum=-0.393;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471929    GT:AD:DP:GQ:PL    0/1:22,13:35:99:287,0,807
22    47083012    rs2748349    T    A    272.26    PASS    AB=0.622;AC=1;AF=0.50;AN=2;BaseQRankSum=2.803;DB;DP=37;Dels=0.0;FS=6.149;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=0.423;QD=7.36;ReadPosRankSum=-1.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471929    GT:AD:DP:GQ:PL    0/1:23,14:37:99:302,0,781
22    47091321    rs135676    C    T    184.58    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;MQRankSum=-1.386;QD=18.46;ReadPosRankSum=-1.386;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216264    GT:AD:DP:GQ:PL    0/1:3,7:10:83.64:215,0,84
22    47095409    rs6007953    C    G    236.87    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.265;DB;DP=30;Dels=0.0;FS=6.576;HRun=1;HaplotypeScore=0.8667;MQ=56.85;MQ0=0;MQRankSum=-0.656;QD=7.9;ReadPosRankSum=-0.402;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216264    GT:AD:DP:GQ:PL    0/1:18,12:30:99:267,0,406
22    47103512    rs135697    G    A    96.99    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.036;QD=9.7;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216264    GT:AD:DP:GQ:PL    0/1:6,4:10:99:127,0,182
22    47104011    rs135698    C    T    36.71    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.937;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=5.24;ReadPosRankSum=-1.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CERK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216264    GT:AD:DP:GQ:PL    0/1:3,4:7:66.70:67,0,97
22    47243815    rs71315170    GGTGTGTGT    G    168.08    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.313;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=208.1285;IndelType=D;MQ=52.25;MQ0=0;MQRankSum=-0.696;QD=7.0;ReadPosRankSum=0.978;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337137    GT:AD:DP:GQ:PL    0/1:16,5:24:99:207,0,317
22    47274638    rs131869    C    T    2758.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.72;MQ0=0;QD=33.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337137    GT:AD:DP:GQ:PL    1/1:0,82:82:99:2791,208,0
22    47290858    rs2071119    T    C    238.07    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.62;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.581;MQ=60.0;MQ0=0;MQRankSum=-2.282;QD=18.31;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337137    GT:AD:DP:GQ:PL    0/1:3,10:13:86.96:268,0,87
22    47307828    rs34153333    A    AC    159.29    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.58;DB;DP=12;FS=0.0;HRun=0;HaplotypeScore=75.2391;IndelType=I;MQ=58.98;MQ0=0;MQRankSum=0.895;QD=13.27;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337137    GT:AD:DP:GQ:PL    0/1:6,6:12:69.55:198,0,70
22    47309007    rs5767410    G    A    41.96    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.026;QD=10.49;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337137    GT:AD:DP:GQ:PL    0/1:2,2:4:71.92:72,0,72
22    47568971    rs5767564    C    T    69.59    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=9.94;ReadPosRankSum=-0.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D22A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337137    GT:AD:DP:GQ:PL    0/1:4,3:7:99:100,0,144
22    47857537    rs130877    T    C    903.47    PASS    AB=0.606;AC=1;AF=0.50;AN=2;BaseQRankSum=0.099;DB;DP=94;Dels=0.0;FS=0.821;HRun=0;HaplotypeScore=5.3479;MQ=58.01;MQ0=0;MQRankSum=2.301;QD=9.61;ReadPosRankSum=0.687;SNPEFF_AMINO_ACID_CHANGE=K55E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_47857048_47857578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LL22NC03-75H12.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405369    GT:AD:DP:GQ:PL    0/1:57,37:94:99:933,0,1542
22    47857551    rs130878    T    G    1018.77    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.57;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=58.35;MQ0=0;MQRankSum=-0.663;QD=10.61;ReadPosRankSum=-1.23;SNPEFF_AMINO_ACID_CHANGE=N50T;SNPEFF_CODON_CHANGE=aAc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_47857048_47857578;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LL22NC03-75H12.2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405369    GT:AD:DP:GQ:PL    0/1:54,42:96:99:1049,0,1582
22    47857576    rs130879    A    G    860.59    PASS    AB=0.62;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.227;DB;DP=92;Dels=0.0;FS=4.364;HRun=0;HaplotypeScore=0.8321;MQ=58.53;MQ0=0;MQRankSum=-0.086;QD=9.35;ReadPosRankSum=0.619;SNPEFF_AMINO_ACID_CHANGE=L42;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_47857048_47857578;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LL22NC03-75H12.2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000405369    GT:AD:DP:GQ:PL    0/1:57,35:92:99:891,0,1836
22    47857657    rs71687944    TA    T    414.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.84;DB;DP=48;FS=0.0;HRun=13;HaplotypeScore=285.9592;IndelType=D;MQ=56.55;MQ0=0;MQRankSum=1.511;QD=8.64;ReadPosRankSum=1.175;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LL22NC03-75H12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481625    GT:AD:DP:GQ:PL    1/1:34,14:48:47.20:457,47,0
22    47859199    rs2294230    C    T    44.47    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=11.12;ReadPosRankSum=1.026;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LL22NC03-75H12.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481625    GT:AD:DP:GQ:PL    0/1:2,2:4:19.62:74,0,20
22    48023241    rs8137874    G    T    958.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.31;MQ0=0;QD=38.33;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RP11-191L9.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380990    GT:AD:DP:GQ:PL    1/1:0,25:25:75.24:991,75,0
22    48942294    rs5845854    CG    C    209.91    PASS    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=3.538;DB;DP=27;FS=0.0;HRun=4;HaplotypeScore=104.3228;IndelType=D;MQ=60.0;MQ0=0;MQRankSum=0.481;QD=7.77;ReadPosRankSum=-0.085;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTA-299D3.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407505    GT:AD:DP:GQ:PL    0/1:17,10:27:99:249,0,584
22    48942339    rs111870101    C    T    707.17    PASS    AB=0.468;AC=1;AF=0.50;AN=2;BaseQRankSum=2.013;DB;DP=47;Dels=0.0;FS=1.15;HRun=0;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.103;QD=15.05;ReadPosRankSum=-0.648;SNPEFF_AMINO_ACID_CHANGE=A19;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_48942325_48942415;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTA-299D3.8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407505    GT:AD:DP:GQ:PL    0/1:22,25:47:99:737,0,582
22    49042316    rs9617407    T    C    249.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:282,21,0
22    49103380    rs130147    A    G    181.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:214,18,0
22    49103660    rs132234    T    C    1101.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;QD=28.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1135,99,0
22    49103824    rs68045816    TTCCTGACCATCTG    T    784.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=0;HaplotypeScore=118.5416;IndelType=D;MQ=34.44;MQ0=0;QD=98.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:1,7:8:21.07:827,21,0
22    49103893    rs132235    G    C    101.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=25.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:134,12,0
22    49145928    rs131959    C    A    93.65    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.729;DB;DP=10;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=0.361;QD=9.36;ReadPosRankSum=-0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    0/1:5,5:10:99:124,0,120
22    49246458    rs28384366    T    C    78.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:111,9,0
22    49246723    rs28394186    A    C    250.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=27.8;SNPEFF_AMINO_ACID_CHANGE=?182;SNPEFF_CODON_CHANGE=Ag/Cg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_49246570_49246724;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:0,9:9:24.06:283,24,0
22    49246747    rs28556787    T    C    166.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
22    49246786    rs28635747    C    T    50.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM19A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336769    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
22    49290550    rs28533249    G    A    436.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=27.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=WI2-81516E3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380981    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:470,36,0
22    49290633    rs73179581    C    T    336.12    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.425;DB;DP=24;Dels=0.0;FS=9.901;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;MQRankSum=1.228;QD=14.01;ReadPosRankSum=1.921;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=WI2-81516E3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380981    GT:AD:DP:GQ:PL    0/1:10,14:24:99:366,0,238
22    49290640    rs28624670    C    T    721.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=WI2-81516E3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380981    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:754,57,0
22    49290774    rs28627099    A    G    166    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.67;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=WI2-81516E3.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380981    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:199,15,0
22    49947575    rs135795    C    T    421.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.85;MQ0=0;QD=28.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414287    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:455,33,0
22    50014369    rs135878    T    A    166.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444628    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:199,15,0
22    50017234    rs916362    A    G    2069.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=57.69;MQ0=0;QD=29.15;SNPEFF_AMINO_ACID_CHANGE=S220;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50016805_50017258;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444628    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2103,168,0
22    50018045    rs763128    G    A    740.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=P139L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50018018_50018329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405854    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:773,60,0
22    50018069    rs2011097    A    G    482.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_AMINO_ACID_CHANGE=L131P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50018018_50018329;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000405854    GT:AD:DP:GQ:PL    1/1:0,17:17:39.13:516,39,0
22    50018497    rs5770594    G    A    291.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=32.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400023    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
22    50018639    rs4524218    G    A    74.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400023    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:107,9,0
22    50018651    rs135879    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=12.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400023    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:82,6,0
22    50018654    rs135880    T    A    83.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=20.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=C22orf34;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000400023    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
22    50169421    rs916419    T    C    355.40    PASS    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.147;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-0.837;QD=14.22;ReadPosRankSum=0.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=BRD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216267    GT:AD:DP:GQ:PL    0/1:11,14:25:99:385,0,331
22    50277835    rs910796    T    C    1672.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.61;MQ0=0;QD=35.59;SNPEFF_AMINO_ACID_CHANGE=S175;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50276982_50282090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBED4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216268    GT:AD:DP:GQ:PL    1/1:0,47:47:99:1706,135,0
22    50277883    rs910797    A    G    2012.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=58.64;MQ0=0;QD=30.96;SNPEFF_AMINO_ACID_CHANGE=P191;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50276982_50282090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBED4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216268    GT:AD:DP:GQ:PL    1/1:0,65:65:99:2045,168,0
22    50278438    rs910798    A    G    1691.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=30.21;SNPEFF_AMINO_ACID_CHANGE=P376;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50276982_50282090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBED4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216268    GT:AD:DP:GQ:PL    1/1:0,56:56:99:1725,141,0
22    50278568    rs910799    A    G    1682.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=29.52;SNPEFF_AMINO_ACID_CHANGE=I420V;SNPEFF_CODON_CHANGE=Ata/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50276982_50282090;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBED4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216268    GT:AD:DP:GQ:PL    1/1:0,57:57:99:1715,135,0
22    50278642    rs910800    C    T    1699.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=G444;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50276982_50282090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBED4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216268    GT:AD:DP:GQ:PL    1/1:1,49:50:99:1732,135,0
22    50280136    rs5770755    T    C    843.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.81;SNPEFF_AMINO_ACID_CHANGE=A942;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50276982_50282090;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBED4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216268    GT:AD:DP:GQ:PL    1/1:0,37:37:78.14:877,78,0
22    50354819    rs11541025    C    A    76.69    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-1.159;QD=8.52;ReadPosRankSum=-0.876;SNPEFF_AMINO_ACID_CHANGE=A44;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50354773_50354882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIM3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000360612    GT:AD:DP:GQ:PL    0/1:5,4:9:99:107,0,141
22    50356274    rs28645887    C    T    334.41    PASS    AB=0.52;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.692;DB;DP=25;Dels=0.0;FS=4.925;HRun=0;HaplotypeScore=1.9048;MQ=60.0;MQ0=0;MQRankSum=-0.245;QD=13.38;ReadPosRankSum=-0.462;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467480    GT:AD:DP:GQ:PL    0/1:13,12:25:99:364,0,469
22    50356302    rs28691713    C    T    414.08    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.263;DB;DP=36;Dels=0.0;FS=1.524;HRun=1;HaplotypeScore=0.9995;MQ=59.36;MQ0=0;MQRankSum=1.599;QD=11.5;ReadPosRankSum=1.229;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467480    GT:AD:DP:GQ:PL    0/1:22,14:36:99:444,0,584
22    50356555    rs4078443    T    C    319.66    PASS    AB=0.391;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=23;Dels=0.0;FS=4.561;HRun=1;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=-0.076;QD=13.9;ReadPosRankSum=-0.228;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467480    GT:AD:DP:GQ:PL    0/1:9,14:23:99:350,0,293
22    50356693    rs4077129    T    C    172.88    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=0.34;DB;DP=16;Dels=0.0;FS=2.158;HRun=3;HaplotypeScore=1.7334;MQ=60.0;MQ0=0;MQRankSum=0.34;QD=10.8;ReadPosRankSum=0.772;SNPEFF_AMINO_ACID_CHANGE=V300A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50356588_50357728;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIM3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000360612    GT:AD:DP:GQ:PL    0/1:7,8:16:99:203,0,206
22    50439194    rs9617090    C    T    125.69    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.67;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.299;QD=8.98;ReadPosRankSum=-0.78;SNPEFF_AMINO_ACID_CHANGE=G70R;SNPEFF_CODON_CHANGE=Ggg/Agg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50439183_50439292;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL17REL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341280    GT:AD:DP:GQ:PL    0/1:7,7:14:99:156,0,214
22    50468907    rs738333    C    T    118.44    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=1.214;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=57.66;MQ0=0;MQRankSum=-2.166;QD=11.84;ReadPosRankSum=-0.731;SNPEFF_AMINO_ACID_CHANGE=G699S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50468859_50469354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440475    GT:AD:DP:GQ:PL    0/1:3,7:10:95.71:148,0,96
22    50468933    rs79298    G    T    108.85    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=1.378;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.191;QD=8.37;ReadPosRankSum=-0.259;SNPEFF_AMINO_ACID_CHANGE=A690E;SNPEFF_CODON_CHANGE=gCg/gAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50468859_50469354;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000440475    GT:AD:DP:GQ:PL    0/1:7,6:13:99:139,0,194
22    50471620    rs5845912    AC    A    560.02    PASS    AB=0.654;AC=1;AF=0.50;AN=2;BaseQRankSum=3.226;DB;DP=34;FS=1.591;HRun=3;HaplotypeScore=86.8235;IndelType=D;MQ=59.77;MQ0=0;MQRankSum=-1.294;QD=16.47;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266182    GT:AD:DP:GQ:PL    0/1:16,18:34:99:599,0,618
22    50472042    rs5771309    T    G    40.44    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.026;QD=8.09;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266182    GT:AD:DP:GQ:PL    0/1:3,2:5:56.40:70,0,56
22    50479856    rs9617137    A    C    156.86    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.237;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.295;QD=9.8;ReadPosRankSum=-1.473;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266182    GT:AD:DP:GQ:PL    0/1:9,6:16:99:187,0,292
22    50480108    rs9628315    C    T    515.54    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.763;DB;DP=45;Dels=0.0;FS=4.246;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.421;QD=11.46;ReadPosRankSum=-2.173;SNPEFF_AMINO_ACID_CHANGE=E258K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50480050_50480236;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000266182    GT:AD:DP:GQ:PL    0/1:24,21:45:99:546,0,797
22    50483850    rs8138121    T    C    662.98    PASS    AB=0.395;AC=1;AF=0.50;AN=2;BaseQRankSum=1.639;DB;DP=38;Dels=0.0;FS=1.491;HRun=2;HaplotypeScore=2.604;MQ=59.39;MQ0=0;MQRankSum=1.022;QD=17.45;ReadPosRankSum=0.925;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477219    GT:AD:DP:GQ:PL    0/1:15,23:38:99:693,0,355
22    50483889    rs8137790    A    G    599.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=0.194;DB;DP=28;Dels=0.0;FS=2.626;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;MQRankSum=-0.581;QD=21.42;ReadPosRankSum=0.526;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477219    GT:AD:DP:GQ:PL    0/1:8,20:28:99:630,0,179
22    50483926    rs8138277    T    C    335.74    PASS    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=1.944;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.085;QD=25.83;ReadPosRankSum=0.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477219    GT:AD:DP:GQ:PL    0/1:3,10:13:43.89:366,0,44
22    50485793    rs137906    T    C    543.09    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.08;DB;DP=36;Dels=0.0;FS=3.703;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.604;QD=15.09;ReadPosRankSum=-1.219;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266182    GT:AD:DP:GQ:PL    0/1:15,21:36:99:573,0,472
22    50487567    rs137911    T    C    611.27    PASS    AB=0.488;AC=1;AF=0.50;AN=2;BaseQRankSum=1.591;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-1.98;QD=14.22;ReadPosRankSum=0.863;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TTLL8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000266182    GT:AD:DP:GQ:PL    0/1:21,22:43:99:641,0,726
22    50499964    rs137919    T    C    161.05    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.328;DB;DP=18;Dels=0.0;FS=2.762;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.515;QD=8.95;ReadPosRankSum=0.328;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483836    GT:AD:DP:GQ:PL    0/1:12,6:18:99:191,0,370
22    50502447    rs5771338    C    T    54.16    PASS    AB=0.615;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.38;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=-0.831;QD=4.17;ReadPosRankSum=0.135;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311597    GT:AD:DP:GQ:PL    0/1:8,5:13:84.15:84,0,218
22    50515459    rs4838882    G    A    325.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311597    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:359,30,0
22    50518723    rs79301    A    G    190.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MLC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311597    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:223,18,0
22    50530651    rs738490    G    A    235.15    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=0.702;DB;DP=21;Dels=0.0;FS=3.522;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.867;QD=11.2;ReadPosRankSum=-0.124;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262794    GT:AD:DP:GQ:PL    0/1:12,9:21:99:265,0,352
22    50547247    rs138217    A    G    1126.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_AMINO_ACID_CHANGE=A219;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50547086_50547273;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540615    GT:AD:DP:GQ:PL    1/1:0,30:30:87.28:1160,87,0
22    50553065    .    C    T    358.46    PASS    AB=0.348;AC=1;AF=0.50;AN=2;BaseQRankSum=1.126;DP=23;Dels=0.0;FS=1.999;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.171;QD=15.59;ReadPosRankSum=-1.263;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428564    GT:AD:DP:GQ:PL    0/1:8,15:23:99:388,0,209
22    50555486    rs126241    G    C    1432.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.39;MQ0=0;QD=37.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262794    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1466,108,0
22    50555619    rs138222    C    T    3700.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=32.74;SNPEFF_AMINO_ACID_CHANGE=L411;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50555586_50555780;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540615    GT:AD:DP:GQ:PL    1/1:0,113:113:99:3700,274,0
22    50555686    rs760749    A    C    1013.44    PASS    AB=0.424;AC=1;AF=0.50;AN=2;BaseQRankSum=0.836;DB;DP=59;Dels=0.0;FS=2.788;HRun=0;HaplotypeScore=0.0;MQ=59.22;MQ0=0;MQRankSum=-0.054;QD=17.18;ReadPosRankSum=0.744;SNPEFF_AMINO_ACID_CHANGE=I434L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50555586_50555780;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540615    GT:AD:DP:GQ:PL    0/1:25,34:59:99:1043,0,829
22    50563708    rs2272833    C    T    39.26    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.0;QD=9.82;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262794    GT:AD:DP:GQ:PL    0/1:2,2:4:63.16:69,0,63
22    50564535    rs5771077    T    C    30.53    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9996;MQ=60.0;MQ0=0;MQRankSum=-1.38;QD=5.09;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262794    GT:AD:DP:GQ:PL    0/1:4,2:6:60.52:61,0,142
22    50572406    rs3736686    A    G    161.68    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.34;DB;DP=28;Dels=0.0;FS=6.631;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=-0.231;QD=5.77;ReadPosRankSum=-0.591;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262794    GT:AD:DP:GQ:PL    0/1:18,10:28:99:192,0,597
22    50587979    rs138270    T    G    127.82    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.307;QD=14.2;ReadPosRankSum=0.729;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262794    GT:AD:DP:GQ:PL    0/1:4,5:9:99:158,0,131
22    50589196    rs2294396    C    A    252.52    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.743;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.179;QD=10.1;ReadPosRankSum=-0.537;SNPEFF_AMINO_ACID_CHANGE=G47;SNPEFF_CODON_CHANGE=ggC/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50589164_50589328;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395852    GT:AD:DP:GQ:PL    0/1:15,10:25:99:283,0,477
22    50591683    rs738337    G    A    457.81    PASS    AB=0.464;AC=1;AF=0.50;AN=2;BaseQRankSum=0.073;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=59.17;MQ0=0;MQRankSum=1.82;QD=16.35;ReadPosRankSum=-0.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262794    GT:AD:DP:GQ:PL    0/1:13,15:28:99:488,0,430
22    50599111    rs2272841    T    C    527.36    PASS    AB=0.476;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.9;DB;DP=42;Dels=0.0;FS=5.146;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.535;QD=12.56;ReadPosRankSum=0.874;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOV10L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354853    GT:AD:DP:GQ:PL    0/1:20,22:42:99:557,0,634
22    50616656    rs7286904    T    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=22.93;SNPEFF_AMINO_ACID_CHANGE=P182;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50616652_50616831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000401643    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
22    50617726    rs73187236    C    T    129.78    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.759;DB;DP=21;Dels=0.0;FS=2.307;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-0.352;QD=6.18;ReadPosRankSum=1.055;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PANX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000159647    GT:AD:DP:GQ:PL    0/1:14,7:21:99:160,0,293
22    50635848    rs2272844    C    G    707.84    PASS    AB=0.405;AC=1;AF=0.50;AN=2;BaseQRankSum=1.253;DB;DP=37;Dels=0.0;FS=1.32;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.449;QD=19.13;ReadPosRankSum=-0.541;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRABD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303434    GT:AD:DP:GQ:PL    0/1:15,22:37:99:738,0,398
22    50637597    rs8238    G    C    533.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.96;MQ0=0;QD=29.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRABD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472677    GT:AD:DP:GQ:PL    1/1:0,18:18:45.11:567,45,0
22    50646936    rs5771102    G    C    133.56    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.256;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9789;MQ=57.66;MQ0=0;MQRankSum=-0.653;QD=6.68;ReadPosRankSum=0.352;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-402G11.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380903    GT:AD:DP:GQ:PL    0/1:13,7:20:99:164,0,356
22    50648577    rs2294401    C    T    104.65    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.143;DB;DP=11;Dels=0.0;FS=2.463;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.408;QD=9.51;ReadPosRankSum=0.143;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-402G11.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380903    GT:AD:DP:GQ:PL    0/1:6,5:11:99:135,0,202
22    50649545    rs4838863    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-402G11.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380903    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
22    50656096    rs2038050    A    G    258.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-402G11.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380903    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:291,24,0
22    50657010    rs4838864    C    G    548.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.9;MQ0=0;QD=32.27;SNPEFF_AMINO_ACID_CHANGE=V1621L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50656917_50657049;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248846    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:582,42,0
22    50657112    rs11912397    C    T    341.53    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.388;DB;DP=24;Dels=0.0;FS=1.74;HRun=0;HaplotypeScore=1.5661;MQ=59.03;MQ0=0;MQRankSum=1.395;QD=14.23;ReadPosRankSum=-1.395;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-402G11.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380903    GT:AD:DP:GQ:PL    0/1:10,14:24:99:372,0,262
22    50658053    rs6537642    A    G    1244.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.87;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP3-402G11.5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380903    GT:AD:DP:GQ:PL    1/1:0,41:41:96.31:1277,96,0
22    50658698    rs5771107    T    A    147.51    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=0.433;DB;DP=25;Dels=0.0;FS=1.973;HRun=0;HaplotypeScore=1.787;MQ=58.13;MQ0=0;MQRankSum=0.1;QD=5.9;ReadPosRankSum=-0.1;SNPEFF_AMINO_ACID_CHANGE=S1364C;SNPEFF_CODON_CHANGE=Agt/Tgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50658680_50660303;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248846    GT:AD:DP:GQ:PL    0/1:18,6:25:99:177,0,622
22    50659047    rs147606883    G    A    330.92    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=1.224;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.65;MQ0=0;MQRankSum=-1.877;QD=11.82;ReadPosRankSum=0.245;SNPEFF_AMINO_ACID_CHANGE=D1247;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50658680_50660303;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000248846    GT:AD:DP:GQ:PL    0/1:14,13:28:99:361,0,378
22    50664612    rs4838865    A    G    3195.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.77;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=L567S;SNPEFF_CODON_CHANGE=tTg/tCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50664479_50664618;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000248846    GT:AD:DP:GQ:PL    1/1:0,101:101:99:3228,247,0
22    50666223    rs56133520    G    A    40.30    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.43;ReadPosRankSum=-0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TUBGCP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000248846    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:70,0,31
22    50682046    .    C    CAAAA    645.57    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=17;HaplotypeScore=326.4148;IndelType=I;MQ=41.42;MQ0=0;QD=29.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HDAC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216271    GT:AD:DP:GQ:PL    1/1:12,6:22:52.80:688,53,0
22    50684296    rs13058062    T    C    114.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HDAC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470378    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:147,12,0
22    50684708    rs2294404    G    A    627.20    PASS    AB=0.672;AC=1;AF=0.50;AN=2;BaseQRankSum=2.768;DB;DP=67;Dels=0.0;FS=3.879;HRun=0;HaplotypeScore=1.8319;MQ=58.96;MQ0=0;MQRankSum=0.728;QD=9.36;ReadPosRankSum=0.252;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HDAC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470378    GT:AD:DP:GQ:PL    0/1:45,22:67:99:657,0,1176
22    50688235    rs738334    T    C    217.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.17;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HDAC10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470965    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:250,21,0
22    50688348    rs1555048    A    G    358.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_AMINO_ACID_CHANGE=C145;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50688289_50688393;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=HDAC10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216271    GT:AD:DP:GQ:PL    1/1:0,14:14:30.09:392,30,0
22    50689030    rs909688    A    G    119.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215659    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:152,12,0
22    50693521    rs5771282    C    T    112.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=28.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395778    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:145,12,0
22    50693534    rs6010218    A    G    146    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=29.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395778    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:179,15,0
22    50693538    rs6010219    G    A    175.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=25.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395778    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:208,18,0
22    50693554    rs6010220    A    G    153.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=44.98;MQ0=0;QD=21.96;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395778    GT:AD:DP:GQ:PL    1/1:0,7:7:18.02:187,18,0
22    50694297    rs1129880    A    G    543.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.19;SNPEFF_AMINO_ACID_CHANGE=S121;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50694239_50694310;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395780    GT:AD:DP:GQ:PL    1/1:0,18:18:45.13:576,45,0
22    50695270    rs5771284    A    C    198.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395778    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:231,18,0
22    50696648    rs2235355    C    T    398.63    PASS    AB=0.673;AC=1;AF=0.50;AN=2;BaseQRankSum=0.075;DB;DP=50;Dels=0.0;FS=1.191;HRun=0;HaplotypeScore=0.9665;MQ=59.54;MQ0=0;MQRankSum=-1.631;QD=7.97;ReadPosRankSum=1.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000215659    GT:AD:DP:GQ:PL    0/1:33,16:50:99:429,0,919
22    50699668    rs2272857    A    G    139.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=23.21;SNPEFF_AMINO_ACID_CHANGE=P61;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50699596_50699725;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAPK12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000215659    GT:AD:DP:GQ:PL    1/1:0,6:6:15.02:172,15,0
22    50703572    rs10626765    C    CAG    353.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=15.2414;IndelType=I;MQ=61.53;MQ0=0;QD=50.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449719    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:395,21,0
22    50704661    rs2076139    T    C    241.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.92;SNPEFF_AMINO_ACID_CHANGE=S252;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50704655_50704734;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330651    GT:AD:DP:GQ:PL    1/1:0,11:11:21.06:274,21,0
22    50705059    rs742185    A    G    433.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.98;SNPEFF_AMINO_ACID_CHANGE=V197A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50704578_50705477;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK11;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000449719    GT:AD:DP:GQ:PL    1/1:0,14:14:36.11:467,36,0
22    50705304    rs760747    C    T    1310.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=59.38;MQ0=0;QD=35.41;SNPEFF_AMINO_ACID_CHANGE=W115*;SNPEFF_CODON_CHANGE=tgG/tgA;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_22_50704578_50705477;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK11;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000449719    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1343,105,0
22    50705466    rs760748    A    G    1392.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=34.81;SNPEFF_AMINO_ACID_CHANGE=F169;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50705363_50705477;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000330651    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1426,114,0
22    50715029    rs5771119    T    C    283.29    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.099;DB;DP=31;Dels=0.0;FS=1.509;HRun=1;HaplotypeScore=0.0;MQ=58.35;MQ0=0;MQRankSum=-0.561;QD=9.14;ReadPosRankSum=-0.935;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399964    GT:AD:DP:GQ:PL    0/1:17,14:31:99:313,0,442
22    50715973    rs28637964    G    T    516.91    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.291;DB;DP=32;Dels=0.0;FS=2.741;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;MQRankSum=-0.681;QD=16.15;ReadPosRankSum=0.434;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399964    GT:AD:DP:GQ:PL    0/1:12,20:32:99:547,0,329
22    50716167    rs1127000    G    A    904.89    PASS    AB=0.549;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.597;DB;DP=71;Dels=0.0;FS=3.291;HRun=2;HaplotypeScore=0.0;MQ=59.68;MQ0=0;MQRankSum=0.867;QD=12.74;ReadPosRankSum=2.659;SNPEFF_AMINO_ACID_CHANGE=A154V;SNPEFF_CODON_CHANGE=gCt/gTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50716020_50716167;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399991    GT:AD:DP:GQ:PL    0/1:39,32:71:99:935,0,1166
22    50717129    rs28718510    T    G    43.38    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=8.68;ReadPosRankSum=-1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492578    GT:AD:DP:GQ:PL    0/1:2,3:5:71.95:73,0,72
22    50718397    rs28611220    A    G    312.05    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.888;DB;DP=32;Dels=0.0;FS=1.34;HRun=0;HaplotypeScore=1.5717;MQ=60.0;MQ0=0;MQRankSum=-0.415;QD=9.75;ReadPosRankSum=-0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000492578    GT:AD:DP:GQ:PL    0/1:17,15:32:99:342,0,498
22    50719251    rs11547734    A    G    111    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;MQRankSum=-1.589;QD=13.87;ReadPosRankSum=-1.067;SNPEFF_AMINO_ACID_CHANGE=P1305;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50719173_50719402;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359337    GT:AD:DP:GQ:PL    0/1:2,6:8:60.72:141,0,61
22    50720622    rs11547728    C    T    197.05    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.372;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.06;MQ0=0;MQRankSum=0.041;QD=9.85;ReadPosRankSum=0.702;SNPEFF_AMINO_ACID_CHANGE=Q1036;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50720613_50720742;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359337    GT:AD:DP:GQ:PL    0/1:12,8:20:99:227,0,373
22    50722134    rs11547731    T    C    92.77    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=0.979;DB;DP=15;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.11;QD=6.18;ReadPosRankSum=0.849;SNPEFF_AMINO_ACID_CHANGE=I823V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50722031_50722179;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359337    GT:AD:DP:GQ:PL    0/1:11,4:15:99:123,0,375
22    50724190    rs28604596    G    T    140.24    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.097;DB;DP=15;Dels=0.0;FS=3.424;HRun=1;HaplotypeScore=0.0;MQ=54.46;MQ0=0;MQRankSum=0.065;QD=9.35;ReadPosRankSum=-1.485;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=PLXNB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425954    GT:AD:DP:GQ:PL    0/1:9,6:15:99:170,0,187
22    50751529    rs67248662    G    C    59.38    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.219;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=0.361;QD=6.6;ReadPosRankSum=0.729;SNPEFF_AMINO_ACID_CHANGE=P452;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50751428_50751537;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413817    GT:AD:DP:GQ:PL    0/1:5,4:9:89.37:89,0,178
22    50752150    rs68178377    C    T    76.73    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=15.35;ReadPosRankSum=0.358;SNPEFF_AMINO_ACID_CHANGE=V403M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50752064_50752153;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000413817    GT:AD:DP:GQ:PL    0/1:2,3:5:67.83:107,0,68
22    50752169    rs73891220    G    A    75.51    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.231;QD=15.1;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460087    GT:AD:DP:GQ:PL    0/1:2,3:5:61.24:106,0,61
22    50753334    rs73439311    G    A    175.79    PASS    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.276;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.78;QD=11.72;ReadPosRankSum=-0.299;SNPEFF_AMINO_ACID_CHANGE=L259;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50753228_50753350;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413817    GT:AD:DP:GQ:PL    0/1:7,8:15:99:206,0,183
22    50753973    rs62241228    T    C    87.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=63.51;MQ0=0;QD=29.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460087    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
22    50754052    rs71964200    TACTC    T    227.31    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.92;DB;DP=9;FS=0.0;HRun=0;HaplotypeScore=51.4077;IndelType=D;MQ=54.49;MQ0=0;MQRankSum=0.322;QD=25.26;ReadPosRankSum=-1.221;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460087    GT:AD:DP:GQ:PL    0/1:4,5:9:99:266,0,223
22    50754363    rs35812349    A    G    238.58    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.306;DB;DP=20;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.66;MQ0=0;MQRankSum=-0.718;QD=11.93;ReadPosRankSum=0.34;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460087    GT:AD:DP:GQ:PL    0/1:10,10:20:99:269,0,352
22    50754466    rs62241230    C    T    986.93    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.122;DB;DP=70;Dels=0.0;FS=2.046;HRun=1;HaplotypeScore=0.7887;MQ=59.34;MQ0=0;MQRankSum=-2.022;QD=14.1;ReadPosRankSum=1.254;SNPEFF_AMINO_ACID_CHANGE=Q230;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50754454_50754516;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413817    GT:AD:DP:GQ:PL    0/1:35,35:70:99:1017,0,928
22    50754648    rs11553141    T    C    286.92    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.693;DB;DP=19;Dels=0.0;FS=2.058;HRun=0;HaplotypeScore=1.6828;MQ=60.0;MQ0=0;MQRankSum=0.619;QD=15.1;ReadPosRankSum=0.041;SNPEFF_AMINO_ACID_CHANGE=A198;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50754603_50754682;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000413817    GT:AD:DP:GQ:PL    0/1:8,11:19:99:317,0,236
22    50757348    rs62241232    G    A    555.31    PASS    AB=0.644;AC=1;AF=0.50;AN=2;BaseQRankSum=2.265;DB;DP=59;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.7653;MQ=58.97;MQ0=0;MQRankSum=0.55;QD=9.41;ReadPosRankSum=-0.696;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413817    GT:AD:DP:GQ:PL    0/1:38,21:59:99:585,0,1095
22    50757470    rs67488807    T    C    581.91    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=0.939;DB;DP=36;Dels=0.0;FS=1.958;HRun=2;HaplotypeScore=1.7675;MQ=60.0;MQ0=0;MQRankSum=-0.398;QD=15.73;ReadPosRankSum=-2.563;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413817    GT:AD:DP:GQ:PL    0/1:16,20:36:99:612,0,535
22    50757541    rs62241233    T    C    232.29    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.589;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=19.36;ReadPosRankSum=-2.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM116B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413817    GT:AD:DP:GQ:PL    0/1:3,9:12:88.66:262,0,89
22    50857140    rs7293044    G    A    72.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=9;HaplotypeScore=2.9317;MQ=53.95;MQ0=0;QD=9.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216061    GT:AD:DP:GQ:PL    1/1:0,8:8:9.03:105,9,0
22    50876077    rs9306550    T    C    244.41    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.47;DB;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.612;QD=12.86;ReadPosRankSum=-0.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216061    GT:AD:DP:GQ:PL    0/1:9,10:19:99:274,0,275
22    50885775    rs1053744    A    G    644.04    PASS    AB=0.574;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.439;DB;DP=61;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6598;MQ=59.31;MQ0=0;MQRankSum=-0.93;QD=10.56;ReadPosRankSum=0.99;SNPEFF_AMINO_ACID_CHANGE=T1827;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50885751_50885882;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390679    GT:AD:DP:GQ:PL    0/1:35,26:61:99:674,0,965
22    50885893    rs75536766    CCA    C    793.45    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=3.412;DB;DP=44;FS=0.0;HRun=0;HaplotypeScore=154.2203;IndelType=D;MQ=60.49;MQ0=0;MQRankSum=-0.315;QD=18.03;ReadPosRankSum=0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216061    GT:AD:DP:GQ:PL    0/1:22,22:44:99:832,0,998
22    50886557    rs6010041    A    G    75.73    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.93;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP6R2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216061    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:106,0,30
22    50897868    rs2281439    G    A    204.69    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.683;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9995;MQ=57.64;MQ0=0;MQRankSum=0.473;QD=11.37;ReadPosRankSum=-1.733;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000337034    GT:AD:DP:GQ:PL    0/1:9,8:18:99:235,0,215
22    50900951    rs116404506    T    C    97.25    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.872;DB;DP=15;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.45;MQ0=0;MQRankSum=-0.968;QD=6.48;ReadPosRankSum=-1.743;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399627    GT:AD:DP:GQ:PL    0/1:8,7:15:99:127,0,276
22    50902702    rs144782443    TG    T    299.96    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=3.204;DB;DP=21;FS=0.0;HRun=3;HaplotypeScore=49.4664;IndelType=D;MQ=59.42;MQ0=0;MQRankSum=1.232;QD=14.28;ReadPosRankSum=-0.317;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SBF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399627    GT:AD:DP:GQ:PL    0/1:10,11:21:99:339,0,369
22    50925672    rs2232878    T    C    38    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.736;QD=12.67;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362068    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:68,0,27
22    50925997    rs3747273    C    A    224.29    PASS    AB=0.437;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=16;Dels=0.0;FS=4.467;HRun=1;HaplotypeScore=0.9734;MQ=60.0;MQ0=0;MQRankSum=-1.376;QD=14.02;ReadPosRankSum=-0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362068    GT:AD:DP:GQ:PL    0/1:7,9:16:99:254,0,230
22    50928340    rs1055271    G    C    225.49    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.087;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.358;QD=9.4;ReadPosRankSum=-0.358;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362068    GT:AD:DP:GQ:PL    0/1:15,9:24:99:255,0,511
22    50928419    rs2232889    A    G    81.63    PASS    AB=0.167;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.736;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9998;MQ=56.04;MQ0=0;MQRankSum=0.736;QD=13.6;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ADM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362068    GT:AD:DP:GQ:PL    0/1:1,5:6:28.61:112,0,29
22    50941985    rs6009975    T    C    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.77;SNPEFF_AMINO_ACID_CHANGE=Q540;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50941376_50942128;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380796    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
22    50942121    rs13056405    C    T    132.02    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.228;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=1.246;QD=12.0;ReadPosRankSum=-0.597;SNPEFF_AMINO_ACID_CHANGE=S495N;SNPEFF_CODON_CHANGE=aGc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50941376_50942128;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000380796    GT:AD:DP:GQ:PL    0/1:4,7:11:99:162,0,127
22    50942761    rs60021445    A    G    177.14    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.413;DB;DP=18;Dels=0.0;FS=6.32;HRun=1;HaplotypeScore=0.0;MQ=54.65;MQ0=0;MQRankSum=-0.053;QD=9.84;ReadPosRankSum=0.788;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505981    GT:AD:DP:GQ:PL    0/1:9,9:18:99:207,0,239
22    50943004    rs762671    C    A    75.34    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=18.83;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=L417;SNPEFF_CODON_CHANGE=ctG/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50942988_50943081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380796    GT:AD:DP:GQ:PL    0/1:1,3:4:30.19:105,0,30
22    50943010    rs762670    G    A    77.41    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.35;ReadPosRankSum=0.727;SNPEFF_AMINO_ACID_CHANGE=R415;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50942988_50943081;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380796    GT:AD:DP:GQ:PL    0/1:1,3:4:27.28:107,0,27
22    50943232    rs8136495    G    A    76.15    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=1.537;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.69;ReadPosRankSum=0.406;SNPEFF_AMINO_ACID_CHANGE=T454M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50943231_50943413;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216080    GT:AD:DP:GQ:PL    0/1:3,3:6:61.24:106,0,61
22    50943423    rs762669    G    A    403.27    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.153;DB;DP=29;Dels=0.0;FS=1.69;HRun=1;HaplotypeScore=1.4538;MQ=58.39;MQ0=0;MQRankSum=0.982;QD=13.91;ReadPosRankSum=-0.851;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000505981    GT:AD:DP:GQ:PL    0/1:14,15:29:99:433,0,406
22    50944128    rs743615    G    A    215.72    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.818;DB;DP=21;Dels=0.0;FS=9.249;HRun=0;HaplotypeScore=1.7753;MQ=58.89;MQ0=0;MQRankSum=0.433;QD=10.27;ReadPosRankSum=-1.203;SNPEFF_AMINO_ACID_CHANGE=H272;SNPEFF_CODON_CHANGE=caC/caT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50944103_50944244;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216080    GT:AD:DP:GQ:PL    0/1:11,9:21:99:246,0,193
22    50944163    rs128941    G    A    219.02    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.876;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=0.625;QD=11.53;ReadPosRankSum=1.78;SNPEFF_AMINO_ACID_CHANGE=L261;SNPEFF_CODON_CHANGE=Ctg/Ttg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50944103_50944244;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000216080    GT:AD:DP:GQ:PL    0/1:11,8:19:99:249,0,273
22    50945256    rs131824    A    G    354.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_AMINO_ACID_CHANGE=P101;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50945211_50945464;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LMF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380796    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:388,30,0
22    50956386    rs56394500    C    G    252.58    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.862;DB;DP=23;Dels=0.0;FS=6.897;HRun=0;HaplotypeScore=1.9142;MQ=57.76;MQ0=0;MQRankSum=-0.339;QD=10.98;ReadPosRankSum=0.523;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299821    GT:AD:DP:GQ:PL    0/1:12,11:23:99:283,0,317
22    50959748    rs9616861    C    T    68.75    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.421;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=1.368;QD=8.59;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395698    GT:AD:DP:GQ:PL    0/1:4,4:8:98.75:99,0,135
22    50960101    rs131814    G    A    650.88    PASS    AB=0.426;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.613;DB;DP=47;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.173;QD=13.85;ReadPosRankSum=-0.764;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395698    GT:AD:DP:GQ:PL    0/1:20,27:47:99:681,0,678
22    50960682    rs140524    C    T    342.27    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.945;DB;DP=30;Dels=0.0;FS=1.515;HRun=0;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;MQRankSum=2.074;QD=11.41;ReadPosRankSum=-1.784;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPH2;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000299821    GT:AD:DP:GQ:PL    0/1:15,15:30:99:372,0,538
22    50961169    rs131813    A    G    490.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395698    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:523,39,0
22    50962208    rs12148    T    G    515.43    PASS    AB=0.662;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.499;DB;DP=65;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.29;MQ0=0;MQRankSum=-1.22;QD=7.93;ReadPosRankSum=0.059;SNPEFF_AMINO_ACID_CHANGE=A211;SNPEFF_CODON_CHANGE=gcA/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50962025_50962853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252785    GT:AD:DP:GQ:PL    0/1:43,22:65:99:545,0,1262
22    50962259    rs131811    G    A    572.06    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.481;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7262;MQ=58.71;MQ0=0;MQRankSum=-0.032;QD=15.89;ReadPosRankSum=0.096;SNPEFF_AMINO_ACID_CHANGE=S194;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50962025_50962853;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCO2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000252785    GT:AD:DP:GQ:PL    0/1:15,21:36:99:602,0,444
22    50962782    rs140523    C    G    386.08    PASS    AB=0.481;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.092;DB;DP=27;Dels=0.0;FS=1.527;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=-0.17;QD=14.3;ReadPosRankSum=-0.898;SNPEFF_AMINO_ACID_CHANGE=R20P;SNPEFF_CODON_CHANGE=cGg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50962025_50962853;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SCO2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000252785    GT:AD:DP:GQ:PL    0/1:13,14:27:99:416,0,413
22    50962948    rs41281527    G    T    400.23    PASS    AB=0.605;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.941;DB;DP=38;Dels=0.0;FS=1.303;HRun=0;HaplotypeScore=0.9867;MQ=60.0;MQ0=0;MQRankSum=-0.269;QD=10.53;ReadPosRankSum=-0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299821    GT:AD:DP:GQ:PL    0/1:23,15:38:99:430,0,664
22    50964153    rs131805    T    C    90.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NCAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000299821    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:123,9,0
22    50966914    rs470119    T    C    230.25    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.048;DB;DP=16;Dels=0.0;FS=2.447;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;MQRankSum=1.418;QD=14.39;ReadPosRankSum=-1.838;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ODF3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329363    GT:AD:DP:GQ:PL    0/1:8,8:16:99:260,0,279
22    50969647    rs139023197    C    G    516.10    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.246;DB;DP=28;Dels=0.0;FS=3.876;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.941;QD=18.43;ReadPosRankSum=0.534;SNPEFF_AMINO_ACID_CHANGE=G131R;SNPEFF_CODON_CHANGE=Ggt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50969620_50969724;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ODF3B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000329363    GT:AD:DP:GQ:PL    0/1:8,20:28:99:546,0,182
22    50987287    rs5770886    A    G    38.46    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=12.82;ReadPosRankSum=-0.736;SNPEFF_AMINO_ACID_CHANGE=Q231R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50986462_50989451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395676    GT:AD:DP:GQ:PL    0/1:1,2:3:30.98:68,0,31
22    50987843    rs61746062    C    T    556.64    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.886;DB;DP=38;Dels=0.0;FS=2.742;HRun=0;HaplotypeScore=0.9997;MQ=59.39;MQ0=0;MQRankSum=0.19;QD=14.65;ReadPosRankSum=-0.044;SNPEFF_AMINO_ACID_CHANGE=Y416;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50986462_50989451;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000395676    GT:AD:DP:GQ:PL    0/1:20,18:38:99:587,0,592
22    50988193    rs131779    A    G    351.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=56.35;MQ0=0;QD=27.01;SNPEFF_AMINO_ACID_CHANGE=H533R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50986462_50989451;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHDC7B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000395676    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:384,33,0
22    50989678    rs6009989    A    G    30.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.45;SNPEFF_AMINO_ACID_CHANGE=L88P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50989626_50989831;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402753    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:62,6,0
22    50989824    rs6009990    C    T    164.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=A39;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_50989626_50989831;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf41;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000402753    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:197,15,0
22    50994608    rs6009994    A    G    654    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.0;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;MQRankSum=-1.467;QD=25.15;ReadPosRankSum=0.667;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402753    GT:AD:DP:GQ:PL    1/1:1,25:26:28.52:687,29,0
22    50994609    rs6009925    C    T    619.34    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.362;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;MQRankSum=0.124;QD=22.12;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402753    GT:AD:DP:GQ:PL    1/1:1,27:28:27.91:652,28,0
22    50994841    rs6009995    A    C    5194.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=159;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9134;MQ=59.71;MQ0=0;QD=32.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406915    GT:AD:DP:GQ:PL    1/1:0,159:159:99:5195,400,0
22    50994864    rs6009996    C    A    4124.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=112;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.59;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=C22orf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406915    GT:AD:DP:GQ:PL    1/1:0,112:112:99:4125,307,0
22    51010112    rs5770907    G    A    128.04    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.135;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.635;QD=10.67;ReadPosRankSum=-1.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423069    GT:AD:DP:GQ:PL    0/1:7,5:12:99:158,0,230
22    51010416    rs8142621    C    T    952.42    PASS    AB=0.477;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.612;DB;DP=65;Dels=0.0;FS=2.1;HRun=1;HaplotypeScore=0.6651;MQ=59.3;MQ0=0;MQRankSum=-0.262;QD=14.43;ReadPosRankSum=0.128;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417176    GT:AD:DP:GQ:PL    0/1:31,34:65:99:982,0,924
22    51010788    rs131761    T    A    166.50    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9789;MQ=57.39;MQ0=0;MQRankSum=-0.248;QD=18.5;ReadPosRankSum=1.203;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417176    GT:AD:DP:GQ:PL    0/1:3,6:9:94.26:196,0,94
22    51010838    rs8137491    T    A    95.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417176    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:128,12,0
22    51011348    rs34744246    G    A    1360.42    PASS    AB=0.453;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.804;DB;DP=96;Dels=0.0;FS=0.782;HRun=1;HaplotypeScore=1.6643;MQ=59.81;MQ0=0;MQRankSum=0.569;QD=14.17;ReadPosRankSum=-1.26;SNPEFF_AMINO_ACID_CHANGE=L233;SNPEFF_CODON_CHANGE=ctC/ctT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51011304_51011489;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434492    GT:AD:DP:GQ:PL    0/1:43,52:96:99:1390,0,1324
22    51011376    rs8142477    G    C    1259.29    PASS    AB=0.473;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.292;DB;DP=91;Dels=0.0;FS=2.872;HRun=0;HaplotypeScore=0.7887;MQ=59.54;MQ0=0;MQRankSum=0.33;QD=13.84;ReadPosRankSum=0.052;SNPEFF_AMINO_ACID_CHANGE=S224C;SNPEFF_CODON_CHANGE=tCc/tGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51011304_51011489;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000434492    GT:AD:DP:GQ:PL    0/1:43,48:91:99:1289,0,1386
22    51011936    rs131760    T    C    335.70    PASS    AB=0.522;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.708;DB;DP=23;Dels=0.0;FS=1.76;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.508;QD=14.6;ReadPosRankSum=0.215;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000417176    GT:AD:DP:GQ:PL    0/1:12,11:23:99:366,0,431
22    51012854    rs76233096    G    A    362.68    PASS    AB=0.649;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.589;DB;DP=37;Dels=0.0;FS=8.655;HRun=0;HaplotypeScore=0.0;MQ=59.38;MQ0=0;MQRankSum=0.207;QD=9.8;ReadPosRankSum=1.002;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406938    GT:AD:DP:GQ:PL    0/1:24,13:37:99:393,0,816
22    51014840    rs8137301    C    T    243.38    PASS    AB=0.64;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.123;DB;DP=25;Dels=0.0;FS=4.5;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.142;QD=9.74;ReadPosRankSum=0.708;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406938    GT:AD:DP:GQ:PL    0/1:16,9:25:99:273,0,515
22    51015210    rs140515    G    C    1395.50    PASS    AB=0.478;AC=1;AF=0.50;AN=2;BaseQRankSum=6.048;DB;DP=92;Dels=0.0;FS=0.978;HRun=3;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.393;QD=15.17;ReadPosRankSum=-0.131;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406938    GT:AD:DP:GQ:PL    0/1:44,48:92:99:1425,0,1233
22    51015490    rs187632508    G    A    309.13    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=1.091;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.3123;MQ=58.33;MQ0=0;MQRankSum=-0.395;QD=11.04;ReadPosRankSum=-0.209;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406938    GT:AD:DP:GQ:PL    0/1:16,12:28:99:339,0,485
22    51015572    rs73445514    C    T    133.23    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.495;QD=19.03;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406938    GT:AD:DP:GQ:PL    0/1:2,5:7:62.82:163,0,63
22    51016098    rs5770916    A    G    170.26    PASS    AB=0.3;AC=1;AF=0.50;AN=2;BaseQRankSum=0.546;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=0.296;QD=17.03;ReadPosRankSum=0.546;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHKB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406938    GT:AD:DP:GQ:PL    0/1:3,7:10:81.24:200,0,81
22    51016360    rs6520157    G    A    314.24    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.74;DB;DP=22;Dels=0.0;FS=4.545;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=-0.034;QD=14.28;ReadPosRankSum=1.467;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_22_51016204_51016363;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPT1B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000434492    GT:AD:DP:GQ:PL    0/1:8,14:22:99:344,0,262
22    51040546    rs131737    C    T    50.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329492    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
22    51041663    rs41282359    C    A    793.58    PASS    AB=0.386;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.496;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=-0.997;QD=18.04;ReadPosRankSum=-0.787;SNPEFF_AMINO_ACID_CHANGE=S34;SNPEFF_CODON_CHANGE=tcC/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51041562_51041927;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000008876    GT:AD:DP:GQ:PL    0/1:17,27:44:99:824,0,376
22    51043278    rs3219201    G    A    291.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_AMINO_ACID_CHANGE=E137;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51043135_51043492;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341339    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
22    51045190    rs1140555    C    T    584.98    PASS    AB=0.486;AC=1;AF=0.50;AN=2;BaseQRankSum=3.614;DB;DP=35;Dels=0.0;FS=13.424;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=0.875;QD=16.71;ReadPosRankSum=1.337;SNPEFF_AMINO_ACID_CHANGE=P363;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51045086_51045193;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341339    GT:AD:DP:GQ:PL    0/1:17,18:35:99:615,0,472
22    51045433    rs131736    C    T    843.64    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=3.384;DB;DP=72;Dels=0.0;FS=1.197;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;MQRankSum=-0.042;QD=11.72;ReadPosRankSum=-1.043;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008876    GT:AD:DP:GQ:PL    0/1:40,32:72:99:874,0,1033
22    51045480    rs131735    G    A    272.14    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.419;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;MQRankSum=-0.85;QD=8.5;ReadPosRankSum=0.376;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008876    GT:AD:DP:GQ:PL    0/1:17,15:32:99:302,0,548
22    51048059    rs965618    A    G    308.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=25.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008876    GT:AD:DP:GQ:PL    1/1:0,12:12:27.08:341,27,0
22    51048400    rs2269380    A    G    115.70    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=1.754;DB;DP=7;Dels=0.0;FS=8.451;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=16.53;ReadPosRankSum=0.55;SNPEFF_AMINO_ACID_CHANGE=T528A;SNPEFF_CODON_CHANGE=Acg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51048346_51048443;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000008876    GT:AD:DP:GQ:PL    0/1:3,4:7:62.84:146,0,63
22    51048514    rs2269379    C    T    160.73    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=0.318;DB;DP=16;Dels=0.0;FS=3.31;HRun=0;HaplotypeScore=1.6006;MQ=43.31;MQ0=0;MQRankSum=-2.223;QD=10.05;ReadPosRankSum=-0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008876    GT:AD:DP:GQ:PL    0/1:9,7:16:99:191,0,264
22    51048781    rs5770941    T    G    193.97    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.588;DB;DP=17;Dels=0.0;FS=3.274;HRun=3;HaplotypeScore=0.5784;MQ=58.9;MQ0=0;MQRankSum=-0.433;QD=11.41;ReadPosRankSum=-0.433;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008876    GT:AD:DP:GQ:PL    0/1:9,8:17:99:224,0,326
22    51048812    rs9616798    G    C    43.97    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.017;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.922;QD=5.5;ReadPosRankSum=0.922;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAPK8IP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000008876    GT:AD:DP:GQ:PL    0/1:4,4:8:73.96:74,0,147
22    51063987    rs79129659    G    C    1685.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=32.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551731    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1719,135,0
22    51064039    rs743616    G    C    1848.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6006;MQ=59.23;MQ0=0;QD=30.81;SNPEFF_AMINO_ACID_CHANGE=T307S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51064007_51064109;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000453344    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1882,141,0
22    51064141    rs762673    G    A    838.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551731    GT:AD:DP:GQ:PL    1/1:0,25:25:66.21:871,66,0
22    51064818    rs762672    T    C    251.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000551731    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:284,24,0
22    51065229    rs6151416    G    A    715.98    PASS    AB=0.527;AC=1;AF=0.50;AN=2;BaseQRankSum=2.621;DB;DP=56;Dels=0.0;FS=4.029;HRun=0;HaplotypeScore=1.5115;MQ=58.76;MQ0=0;MQRankSum=0.177;QD=12.79;ReadPosRankSum=-0.716;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000216124    GT:AD:DP:GQ:PL    0/1:29,26:56:99:746,0,794
22    51117580    rs9616915    T    C    75.59    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.988;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.406;QD=12.6;ReadPosRankSum=-1.537;SNPEFF_AMINO_ACID_CHANGE=I245T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51117447_51117614;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262795    GT:AD:DP:GQ:PL    0/1:3,3:6:99:106,0,100
22    51137249    rs1557620    T    C    57.81    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.731;DB;DP=10;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.296;QD=5.78;ReadPosRankSum=2.166;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262795    GT:AD:DP:GQ:PL    0/1:7,3:10:87.80:88,0,250
22    51143606    rs76179018    C    G    107.59    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=7;Dels=0.0;FS=3.68;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.55;QD=15.37;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262795    GT:AD:DP:GQ:PL    0/1:3,4:7:99:138,0,104
22    51150167    rs5770819    T    C    152.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262795    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:185,15,0
22    51159798    rs145196448    G    A    606.51    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.477;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.477;QD=18.38;ReadPosRankSum=1.356;SNPEFF_AMINO_ACID_CHANGE=K1181;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51158612_51160865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHANK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000445220    GT:AD:DP:GQ:PL    0/1:11,22:33:99:636,0,243
22    51183017    rs58651371    C    T    112.44    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.42;MQ0=0;QD=22.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000529621    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:145,12,0
22    51183255    rs5771002    A    G    295.88    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.36;MQ0=3;QD=15.57;SNPEFF_AMINO_ACID_CHANGE=M296V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_22_51183081_51183762;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=ACR;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000216139    GT:AD:DP:GQ:PL    1/1:1,18:19:30.06:329,30,0
22    51211392    rs3888396    T    C    160.71    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.68;MQ0=1;QD=17.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464740    GT:AD:DP:GQ:PL    1/1:0,9:9:21.02:194,21,0
22    51220441    rs76759269    T    C    243.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=23.0;MQ0=0;QD=20.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RABL2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413505    GT:AD:DP:GQ:PL    1/1:0,12:12:30.03:277,30,0
X    200860    rs149308410    T    C    2157.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.71;MQ0=0;QD=33.19;SNPEFF_AMINO_ACID_CHANGE=G2;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_200834_200981;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381657    GT:AD:DP:GQ:PL    1/1:0,64:65:99:2190,169,0
X    205300    rs143612151    C    T    972.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=34.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381657    GT:AD:DP:GQ:PL    1/1:0,28:28:81.23:1006,81,0
X    205373    rs183135182    A    G    1784.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.3;MQ0=0;QD=27.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381657    GT:AD:DP:GQ:PL    1/1:0,66:66:99:1818,153,0
X    207362    rs138167631    C    T    352.07    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.965;DB;DP=31;Dels=0.0;FS=3.192;HRun=0;HaplotypeScore=1.9148;MQ=60.0;MQ0=0;MQRankSum=-0.774;QD=11.36;ReadPosRankSum=-0.258;SNPEFF_AMINO_ACID_CHANGE=D104;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_207315_207443;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381657    GT:AD:DP:GQ:PL    0/1:17,14:31:99:382,0,477
X    207451    rs142740661    C    T    101.96    PASS    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=2.691;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;MQRankSum=-1.511;QD=4.63;ReadPosRankSum=-1.511;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429181    GT:AD:DP:GQ:PL    0/1:16,6:22:99:132,0,419
X    207540    rs191936527    A    G    121.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429181    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
X    208386    rs147599964    A    G    339.54    PASS    AB=0.519;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.315;DB;DP=27;Dels=0.0;FS=3.128;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=0.412;QD=12.58;ReadPosRankSum=-1.334;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415337    GT:AD:DP:GQ:PL    0/1:14,13:27:99:370,0,456
X    208434    rs188308978    G    A    413.30    PASS    AB=0.077;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.401;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.668;QD=31.79;ReadPosRankSum=-1.737;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415337    GT:AD:DP:GQ:PL    0/1:1,12:13:1.52:442,0,2
X    209941    rs142010866    C    T    235.18    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=1.999;DB;DP=18;Dels=0.0;FS=3.214;HRun=0;HaplotypeScore=0.8321;MQ=60.0;MQ0=0;MQRankSum=0.4;QD=13.07;ReadPosRankSum=0.222;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415337    GT:AD:DP:GQ:PL    0/1:10,8:18:99:265,0,292
X    222099    rs143844377    C    T    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.23;MQ0=0;QD=21.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381657    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
X    224593    rs149663971    T    C    98.48    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.922;DB;DP=7;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.198;QD=14.07;ReadPosRankSum=-0.922;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLCXD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381657    GT:AD:DP:GQ:PL    0/1:2,5:7:61.98:128,0,62
X    228178    rs182069943    C    T    272.54    PASS    AB=0.593;AC=1;AF=0.50;AN=2;BaseQRankSum=0.467;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.986;QD=10.09;ReadPosRankSum=-0.882;SNPEFF_AMINO_ACID_CHANGE=V116I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_228086_228294;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000326153    GT:AD:DP:GQ:PL    0/1:16,11:27:99:303,0,440
X    229542    rs145599472    G    A    305.28    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.054;DB;DP=26;Dels=0.0;FS=3.682;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.18;QD=11.74;ReadPosRankSum=-1.569;SNPEFF_AMINO_ACID_CHANGE=A40;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_229433_229591;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326153    GT:AD:DP:GQ:PL    0/1:14,12:26:99:335,0,437
X    229645    rs181132884    T    A    220.51    PASS    AB=0.429;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.471;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.225;QD=15.75;ReadPosRankSum=-1.468;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326153    GT:AD:DP:GQ:PL    0/1:6,8:14:99:251,0,170
X    229651    rs149368026    C    T    139.65    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=2.793;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.135;QD=11.64;ReadPosRankSum=1.977;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326153    GT:AD:DP:GQ:PL    0/1:7,5:12:99:170,0,185
X    231031    rs146660769    C    G    36.18    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=12.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=GTPBP6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000326153    GT:AD:DP:GQ:PL    0/1:1,2:3:27.10:66,0,27
X    299481    rs141523608    C    A    272.16    PASS    AB=0.633;AC=1;AF=0.50;AN=2;BaseQRankSum=0.292;DB;DP=30;Dels=0.0;FS=4.563;HRun=0;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=-0.247;QD=9.07;ReadPosRankSum=-0.472;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477636    GT:AD:DP:GQ:PL    0/1:19,11:30:99:302,0,497
X    299501    rs145396935    C    T    322.96    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.564;DB;DP=35;Dels=0.0;FS=6.893;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.187;QD=9.23;ReadPosRankSum=-0.409;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477636    GT:AD:DP:GQ:PL    0/1:22,13:35:99:353,0,647
X    299591    rs137911861    A    G    779.54    PASS    AB=0.526;AC=1;AF=0.50;AN=2;BaseQRankSum=1.239;DB;DP=57;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;MQRankSum=0.248;QD=13.68;ReadPosRankSum=1.67;SNPEFF_AMINO_ACID_CHANGE=A464;SNPEFF_CODON_CHANGE=gcT/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_299513_299631;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000390665    GT:AD:DP:GQ:PL    0/1:30,27:57:99:810,0,916
X    299793    rs150793764    T    C    31.40    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=7.85;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477636    GT:AD:DP:GQ:PL    0/1:1,3:4:28.77:61,0,29
X    301742    rs137945443    A    G    326.21    PASS    AB=0.409;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.604;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=0.107;QD=14.83;ReadPosRankSum=0.249;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445792    GT:AD:DP:GQ:PL    0/1:9,13:22:99:356,0,304
X    301774    rs183721821    G    C    164.43    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.365;DB;DP=10;Dels=0.0;FS=3.979;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.365;QD=16.44;ReadPosRankSum=-0.365;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445792    GT:AD:DP:GQ:PL    0/1:4,6:10:99:194,0,128
X    302139    rs138608845    G    C    1956.83    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.227;DB;DP=151;Dels=0.0;FS=8.618;HRun=1;HaplotypeScore=0.8321;MQ=59.12;MQ0=0;MQRankSum=-0.036;QD=12.96;ReadPosRankSum=-0.486;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445792    GT:AD:DP:GQ:PL    0/1:82,69:151:99:1987,0,2534
X    302224    .    G    GCCC    688.25    PASS    AB=0.79;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.924;DP=49;FS=0.0;HRun=6;HaplotypeScore=293.644;IndelType=I;MQ=54.76;MQ0=0;MQRankSum=-2.083;QD=14.05;ReadPosRankSum=-0.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445792    GT:AD:DP:GQ:PL    0/1:36,12:49:99:727,0,868
X    302423    rs147235825    T    C    72.85    PASS    AB=0.4;AC=1;AF=0.50;AN=2;BaseQRankSum=0.358;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=0.358;QD=14.57;ReadPosRankSum=1.231;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445792    GT:AD:DP:GQ:PL    0/1:2,3:5:68.83:103,0,69
X    302743    rs150849334    G    A    590.38    PASS    AB=0.55;AC=1;AF=0.50;AN=2;BaseQRankSum=0.578;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.099;QD=14.76;ReadPosRankSum=2.099;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445792    GT:AD:DP:GQ:PL    0/1:22,18:40:99:620,0,701
X    307377    rs146268325    C    T    125.85    PASS    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.956;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.322;QD=15.73;ReadPosRankSum=0.684;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    0/1:3,5:8:99:156,0,102
X    307728    rs180878723    A    G    38.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=12.75;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:69,6,0
X    307920    .    G    C    85.84    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=2.115;DP=17;Dels=0.0;FS=5.237;HRun=1;HaplotypeScore=4.2109;MQ=57.23;MQ0=0;MQRankSum=0.163;QD=5.05;ReadPosRankSum=-2.115;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    0/1:10,6:17:99:116,0,270
X    320580    rs146676613    T    C    1298.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=33.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1331,102,0
X    320742    .    A    ACTT    298.53    PASS    AC=2;AF=1.00;AN=2;DP=5;FS=0.0;HRun=0;HaplotypeScore=12.0836;IndelType=I;MQ=55.21;MQ0=0;QD=59.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:340,15,0
X    322066    rs184700924    A    T    127.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=31.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
X    322161    rs139099006    A    G    472.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=31.49;SNPEFF_AMINO_ACID_CHANGE=D135;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_322140_322325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    1/1:0,14:15:42.12:505,42,0
X    322257    rs144954420    G    A    331.76    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.291;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.334;QD=11.06;ReadPosRankSum=0.91;SNPEFF_AMINO_ACID_CHANGE=P103;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_322140_322325;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    0/1:18,12:30:99:362,0,519
X    322386    rs141323692    C    T    190.25    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.678;QD=15.85;ReadPosRankSum=-0.278;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP2R3B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381625    GT:AD:DP:GQ:PL    0/1:5,7:12:99:220,0,114
X    591926    rs140970936    T    G    2333.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHOX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334060    GT:AD:DP:GQ:PL    1/1:0,70:71:99:2366,189,0
X    1314656    rs149610562    T    C    77.06    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=19.27;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381566    GT:AD:DP:GQ:PL    0/1:1,3:4:24.94:107,0,25
X    1314694    rs191061362    G    C    39.57    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.4673;MQ=53.95;MQ0=0;MQRankSum=0.736;QD=9.89;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381566    GT:AD:DP:GQ:PL    0/1:1,2:4:25.32:70,0,25
X    1314764    rs145925999    T    G    498.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=35.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381566    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:531,39,0
X    1314857    rs139812396    G    A    974.86    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=0.814;DB;DP=65;Dels=0.0;FS=4.541;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=0.357;QD=15.0;ReadPosRankSum=-0.478;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381566    GT:AD:DP:GQ:PL    0/1:30,35:65:99:1005,0,1006
X    1314858    rs142083864    G    T    953.59    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.038;DB;DP=65;Dels=0.0;FS=4.519;HRun=1;HaplotypeScore=0.0;MQ=59.65;MQ0=0;MQRankSum=-0.047;QD=14.67;ReadPosRankSum=-0.545;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381566    GT:AD:DP:GQ:PL    0/1:30,35:65:99:984,0,1000
X    1315104    rs149923873    G    C    587.40    PASS    AB=0.459;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.093;DB;DP=37;Dels=0.0;FS=3.378;HRun=0;HaplotypeScore=1.4538;MQ=59.38;MQ0=0;MQRankSum=-1.173;QD=15.88;ReadPosRankSum=1.173;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381566    GT:AD:DP:GQ:PL    0/1:17,20:37:99:617,0,548
X    1321079    rs143402504    G    C    95.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381566    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:128,9,0
X    1331495    rs140859855    G    C    554    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.66;DB;DP=50;Dels=0.0;FS=2.463;HRun=1;HaplotypeScore=0.0;MQ=56.2;MQ0=0;MQRankSum=-0.543;QD=11.08;ReadPosRankSum=-0.563;SNPEFF_AMINO_ACID_CHANGE=A11;SNPEFF_CODON_CHANGE=gcC/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1331449_1331527;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CRLF2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381566    GT:AD:DP:GQ:PL    0/1:25,25:50:99:584,0,681
X    1404624    .    AGG    A    86.81    QDFilter2    AB=0.853;AC=1;AF=0.50;AN=2;BaseQRankSum=3.068;DP=64;FS=19.526;HRun=2;HaplotypeScore=549.9041;IndelType=D;MQ=38.57;MQ0=0;MQRankSum=-3.437;QD=1.36;ReadPosRankSum=-3.052;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481245    GT:AD:DP:GQ:PL    0/1:53,9:64:99:126,0,808
X    1407306    rs189725921    C    T    39.64    QDFilter2    AB=0.688;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.574;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.445;MQ=51.83;MQ0=0;MQRankSum=-4.152;QD=1.17;ReadPosRankSum=-2.822;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355432    GT:AD:DP:GQ:PL    0/1:22,10:34:69.63:70,0,555
X    1407315    rs146643651    T    C    153.52    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=3.493;DB;DP=38;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=2.4417;MQ=51.49;MQ0=0;MQRankSum=-3.46;QD=4.04;ReadPosRankSum=-2.931;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355432    GT:AD:DP:GQ:PL    0/1:22,16:38:99:184,0,509
X    1407317    rs141333770    G    A    174.35    PASS    AB=0.575;AC=1;AF=0.50;AN=2;BaseQRankSum=2.979;DB;DP=40;Dels=0.0;FS=6.953;HRun=1;HaplotypeScore=1.575;MQ=51.41;MQ0=0;MQRankSum=-4.088;QD=4.36;ReadPosRankSum=-2.947;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355432    GT:AD:DP:GQ:PL    0/1:23,17:40:99:204,0,597
X    1407796    .    CAT    C    1470.42    PASS    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=6.435;DP=72;FS=4.642;HRun=0;HaplotypeScore=238.8808;IndelType=D;MQ=60.58;MQ0=0;MQRankSum=0.224;QD=20.42;ReadPosRankSum=-0.489;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000477940    GT:AD:DP:GQ:PL    0/1:35,37:72:99:1509,0,1845
X    1414419    rs142936015    G    A    1613.52    PASS    AB=0.555;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.682;DB;DP=164;DS;Dels=0.0;FS=7.912;HRun=1;HaplotypeScore=2.4947;MQ=55.48;MQ0=1;MQRankSum=0.983;QD=9.84;ReadPosRankSum=0.749;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412290    GT:AD:DP:GQ:PL    0/1:91,73:164:99:1644,0,2784
X    1414488    rs183601008    G    A    324.63    PASS    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.324;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=48.58;MQ0=2;MQRankSum=-2.93;QD=4.7;ReadPosRankSum=0.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412290    GT:AD:DP:GQ:PL    0/1:36,32:69:99:355,0,1123
X    1414516    .    C    G    472.35    PASS    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.436;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.8853;MQ=52.91;MQ0=3;MQRankSum=0.021;QD=13.5;ReadPosRankSum=0.021;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412290    GT:AD:DP:GQ:PL    0/1:18,17:35:99:502,0,434
X    1414535    rs151160509    T    C    197.62    PASS    AB=0.586;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.071;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6643;MQ=51.32;MQ0=3;MQRankSum=0.116;QD=6.81;ReadPosRankSum=0.869;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412290    GT:AD:DP:GQ:PL    0/1:17,12:29:99:228,0,396
X    1414579    rs191678327    A    G    103.94    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.52;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.89;MQ0=3;MQRankSum=1.663;QD=6.93;ReadPosRankSum=1.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412290    GT:AD:DP:GQ:PL    0/1:9,6:15:99:134,0,250
X    1419249    rs144218578    A    G    141.38    PASS    AB=0.563;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.387;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.953;QD=8.84;ReadPosRankSum=0.741;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491683    GT:AD:DP:GQ:PL    0/1:9,7:16:99:171,0,326
X    1419300    rs189275250    C    T    615.46    PASS    AB=0.532;AC=1;AF=0.50;AN=2;BaseQRankSum=0.522;DB;DP=47;Dels=0.0;FS=4.001;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.757;QD=13.09;ReadPosRankSum=-0.778;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491683    GT:AD:DP:GQ:PL    0/1:25,22:47:99:645,0,813
X    1419571    rs185674814    C    G    294.29    PASS    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=0.122;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.4447;MQ=60.0;MQ0=0;MQRankSum=-1.049;QD=10.9;ReadPosRankSum=-1.147;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493312    GT:AD:DP:GQ:PL    0/1:15,12:27:99:324,0,485
X    1422868    rs146020675    G    A    2564.25    PASS    AB=0.602;AC=1;AF=0.50;AN=2;BaseQRankSum=0.772;DB;DP=226;Dels=0.0;FS=4.693;HRun=0;HaplotypeScore=2.8452;MQ=59.8;MQ0=0;MQRankSum=-0.123;QD=11.35;ReadPosRankSum=1.082;SNPEFF_AMINO_ACID_CHANGE=V200;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1422816_1422912;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000501036    GT:AD:DP:GQ:PL    0/1:136,90:226:99:2594,0,3937
X    1422943    rs139978009    T    C    1224.67    PASS    AB=0.598;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.974;DB;DP=123;Dels=0.0;FS=5.124;HRun=0;HaplotypeScore=0.6651;MQ=59.62;MQ0=0;MQRankSum=-2.109;QD=9.96;ReadPosRankSum=-0.214;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493312    GT:AD:DP:GQ:PL    0/1:73,49:123:99:1255,0,2414
X    1423039    rs186920803    T    C    288.95    PASS    AB=0.552;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.188;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=58.39;MQ0=0;MQRankSum=0.241;QD=9.96;ReadPosRankSum=1.732;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493312    GT:AD:DP:GQ:PL    0/1:16,13:29:99:319,0,566
X    1423076    rs143326990    T    A    36.50    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.098;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;MQRankSum=-0.851;QD=3.65;ReadPosRankSum=-1.453;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSF2RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493312    GT:AD:DP:GQ:PL    0/1:5,5:10:66.49:66,0,180
X    1460554    rs181392476    A    G    427.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:461,39,0
X    1460617    rs185999304    G    C    1941.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1974,144,0
X    1460740    rs149479304    A    G    2264.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=59.66;MQ0=0;QD=33.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,68:68:99:2297,184,0
X    1460828    rs186314131    C    T    1018.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,27:27:78.26:1052,78,0
X    1460918    rs183036206    C    T    92.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:124,9,0
X    1464126    .    C    CAA    1913.42    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.575;DP=65;FS=0.0;HRun=12;HaplotypeScore=538.3179;IndelType=I;MQ=54.6;MQ0=0;MQRankSum=-0.32;QD=29.44;ReadPosRankSum=-1.001;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:12,41:65:99:1955,115,0
X    1464184    rs150072215    G    T    4056.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9454;MQ=57.21;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,121:123:99:4057,307,0
X    1467219    rs144546107    G    C    1207.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6006;MQ=57.05;MQ0=0;QD=30.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1240,99,0
X    1467246    .    C    CA    1200.73    PASS    AB=0.669;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.712;DP=89;FS=1.201;HRun=8;HaplotypeScore=474.2793;IndelType=I;MQ=58.94;MQ0=0;MQRankSum=-1.226;QD=13.49;ReadPosRankSum=-1.071;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:45,44:89:99:1240,0,849
X    1467290    rs143694639    G    C    2127.88    PASS    AB=0.564;AC=1;AF=0.50;AN=2;BaseQRankSum=2.601;DB;DP=165;Dels=0.0;FS=1.67;HRun=0;HaplotypeScore=3.2423;MQ=58.72;MQ0=0;MQRankSum=-0.021;QD=12.9;ReadPosRankSum=-0.895;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:93,72:165:99:2158,0,3130
X    1467567    .    CTT    C    575.55    PASS    AB=0.704;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.19;DP=38;FS=0.0;HRun=3;HaplotypeScore=434.5617;IndelType=D;MQ=44.86;MQ0=0;MQRankSum=-0.444;QD=15.15;ReadPosRankSum=-0.475;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:22,16:38:99:615,0,586
X    1467573    .    T    TTC    635.17    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.549;DP=35;FS=0.0;HRun=0;HaplotypeScore=429.5242;IndelType=I;MQ=41.51;MQ0=0;MQRankSum=0.126;QD=18.15;ReadPosRankSum=1.214;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:28,7:35:99:674,0,389
X    1467575    .    CTT    C    374.80    PASS    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.203;DP=31;FS=0.0;HRun=3;HaplotypeScore=429.2373;IndelType=D;MQ=37.38;MQ0=0;MQRankSum=-1.078;QD=12.09;ReadPosRankSum=0.498;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:23,8:31:99:414,0,479
X    1467625    .    T    TTC    329.44    PASS    AC=2;AF=1.00;AN=2;DP=9;FS=0.0;HRun=0;HaplotypeScore=167.7779;IndelType=I;MQ=33.88;MQ0=0;QD=36.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:3,6:9:21.07:371,21,0
X    1470937    rs139210167    C    T    83.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:116,9,0
X    1471138    rs145821690    G    T    3436.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.26;MQ0=0;QD=36.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,94:94:99:3436,262,0
X    1471542    rs188652682    C    G    130.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
X    1497644    rs138936342    G    C    198.31    PASS    AB=0.611;AC=1;AF=0.50;AN=2;BaseQRankSum=1.61;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;MQRankSum=-0.83;QD=11.02;ReadPosRankSum=0.342;SNPEFF_AMINO_ACID_CHANGE=V245L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1497552_1497657;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381469    GT:AD:DP:GQ:PL    0/1:11,7:18:99:228,0,242
X    1497687    rs149404274    G    A    135.10    PASS    AB=0.538;AC=1;AF=0.50;AN=2;BaseQRankSum=0.101;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=0.935;QD=10.39;ReadPosRankSum=-1.369;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:7,6:13:99:165,0,225
X    1499770    rs181320397    A    G    249.24    PASS    AB=0.368;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.989;DB;DP=19;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.78;MQ0=0;MQRankSum=1.54;QD=13.12;ReadPosRankSum=0.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:7,12:19:99:279,0,225
X    1499835    rs145727659    T    C    1228.29    PASS    AB=0.441;AC=1;AF=0.50;AN=2;BaseQRankSum=5.365;DB;DP=68;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.5362;MQ=59.66;MQ0=0;MQRankSum=1.898;QD=18.06;ReadPosRankSum=-0.889;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:30,38:68:99:1258,0,949
X    1499878    rs146536506    T    G    1606.28    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.603;DB;DP=126;Dels=0.0;FS=1.029;HRun=0;HaplotypeScore=1.5518;MQ=59.52;MQ0=0;MQRankSum=1.92;QD=12.75;ReadPosRankSum=0.068;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:65,61:126:99:1636,0,1898
X    1500009    rs141238384    T    C    2144.44    PASS    AB=0.513;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.442;DB;DP=156;Dels=0.0;FS=7.011;HRun=0;HaplotypeScore=3.1431;MQ=59.56;MQ0=0;MQRankSum=-1.108;QD=13.75;ReadPosRankSum=-0.533;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:80,76:156:99:2174,0,2360
X    1500137    rs145135640    C    T    462.11    PASS    AB=0.528;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.458;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9957;MQ=60.0;MQ0=0;MQRankSum=-0.856;QD=12.84;ReadPosRankSum=0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381401    GT:AD:DP:GQ:PL    0/1:19,17:36:99:492,0,663
X    1501471    rs139405667    C    T    144.39    PASS    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=2.637;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.52;MQ0=0;MQRankSum=1.031;QD=13.13;ReadPosRankSum=-0.143;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381469    GT:AD:DP:GQ:PL    0/1:6,5:11:99:174,0,162
X    1506113    rs142708943    T    C    204.84    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=0.444;DB;DP=23;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.99;MQ0=0;MQRankSum=-0.921;QD=8.91;ReadPosRankSum=0.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:15,8:23:99:235,0,456
X    1506318    rs182857272    C    G    472.63    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=2.471;DB;DP=32;Dels=0.0;FS=6.576;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.008;QD=14.77;ReadPosRankSum=1.443;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL3RA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331035    GT:AD:DP:GQ:PL    0/1:16,16:32:99:503,0,436
X    1508067    rs183105539    A    G    180.96    PASS    AB=0.462;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.016;DB;DP=13;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.101;QD=13.92;ReadPosRankSum=0.101;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447786    GT:AD:DP:GQ:PL    0/1:6,7:13:99:211,0,211
X    1531416    rs190768386    T    C    338.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.47;MQ0=0;QD=30.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:372,30,0
X    1531457    rs151307117    C    T    781.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.64;MQ0=0;QD=33.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    1/1:0,23:23:63.17:814,63,0
X    1531520    rs140767433    C    G    1783.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.44;MQ0=0;QD=35.67;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1816,141,0
X    1531687    rs138119011    T    C    1619.04    PASS    AB=0.504;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.435;DB;DP=135;Dels=0.0;FS=4.682;HRun=0;HaplotypeScore=2.8152;MQ=59.21;MQ0=0;MQRankSum=0.535;QD=11.99;ReadPosRankSum=-0.144;SNPEFF_AMINO_ACID_CHANGE=H452R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1531625_1531747;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416733    GT:AD:DP:GQ:PL    0/1:68,67:135:99:1649,0,2095
X    1531765    rs148250762    C    G    2707.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.2434;MQ=59.07;MQ0=0;QD=36.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    1/1:0,74:75:99:2741,205,0
X    1531770    rs141453748    T    C    2490.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.03;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    1/1:0,72:72:99:2524,196,0
X    1531838    rs138256043    A    G    1141.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    1/1:0,32:33:90.27:1175,90,0
X    1537002    rs192663340    C    G    574.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=27.34;SNPEFF_AMINO_ACID_CHANGE=T386;SNPEFF_CODON_CHANGE=acG/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1536866_1537009;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416733    GT:AD:DP:GQ:PL    1/1:0,21:21:48.15:607,48,0
X    1537881    rs151271783    C    T    213.30    PASS    AB=0.533;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=15;Dels=0.0;FS=5.497;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.447;QD=14.22;ReadPosRankSum=1.099;SNPEFF_AMINO_ACID_CHANGE=V382M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1537875_1538007;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000416733    GT:AD:DP:GQ:PL    0/1:8,7:15:99:243,0,216
X    1544272    rs142844203    A    C    239.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463763    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:273,21,0
X    1544322    rs144618923    G    C    477.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463763    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:511,42,0
X    1544333    rs148492825    C    T    774.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463763    GT:AD:DP:GQ:PL    1/1:0,20:20:60.18:807,60,0
X    1544671    rs146778249    G    A    300.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463763    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:334,24,0
X    1544746    rs140510936    T    C    123.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463763    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
X    1546792    rs147098886    G    A    1265.27    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.238;DB;DP=56;Dels=0.0;FS=3.979;HRun=0;HaplotypeScore=0.8667;MQ=57.69;MQ0=0;MQRankSum=-1.257;QD=22.59;ReadPosRankSum=-0.442;SNPEFF_AMINO_ACID_CHANGE=G168;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1546627_1547014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416733    GT:AD:DP:GQ:PL    1/1:4,52:56:85.86:1298,86,0
X    1546876    rs148858066    A    G    1286.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.953;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7337;MQ=58.95;MQ0=0;MQRankSum=1.473;QD=32.15;ReadPosRankSum=0.087;SNPEFF_AMINO_ACID_CHANGE=R140;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1546627_1547014;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000416733    GT:AD:DP:GQ:PL    1/1:1,39:40:65.34:1319,65,0
X    1547070    rs141773798    G    C    611.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462195    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:644,48,0
X    1547091    rs144883046    C    A    395.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462195    GT:AD:DP:GQ:PL    1/1:0,14:14:33.08:429,33,0
X    1553872    rs139096907    G    C    183.66    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.717;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.825;QD=15.31;ReadPosRankSum=-1.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    0/1:6,6:12:99:214,0,162
X    1554649    rs140898431    T    C    563.78    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.425;DB;DP=44;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;MQRankSum=1.081;QD=12.81;ReadPosRankSum=-0.498;SNPEFF_AMINO_ACID_CHANGE=T34;SNPEFF_CODON_CHANGE=acA/acG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1554587_1554651;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000534940    GT:AD:DP:GQ:PL    0/1:22,22:44:99:594,0,645
X    1554655    rs150136641    T    C    541.13    PASS    AB=0.489;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.303;DB;DP=45;Dels=0.0;FS=1.172;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;MQRankSum=-0.129;QD=12.03;ReadPosRankSum=-0.293;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    0/1:22,23:45:99:571,0,621
X    1558072    rs141691546    G    A    1113.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=31.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474865    GT:AD:DP:GQ:PL    1/1:0,35:35:87.24:1146,87,0
X    1558206    rs183236119    G    C    85.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474865    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:118,9,0
X    1560998    rs141147463    G    A    2169.24    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DB;DP=68;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=59.32;MQ0=0;MQRankSum=-0.44;QD=31.9;ReadPosRankSum=-0.491;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMTL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381317    GT:AD:DP:GQ:PL    1/1:1,67:68:99:2202,169,0
X    1584169    rs138434569    T    C    64.86    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.727;QD=16.22;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460672    GT:AD:DP:GQ:PL    0/1:1,3:4:30.20:95,0,30
X    1585500    rs144490561    T    C    503.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=P2RY8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381297    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:537,42,0
X    1713021    rs144582736    C    T    1894.78    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.621;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=60.0;MQ0=0;MQRankSum=-1.062;QD=30.08;ReadPosRankSum=-0.782;SNPEFF_AMINO_ACID_CHANGE=R222;SNPEFF_CODON_CHANGE=cgC/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1712337_1713117;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000313871    GT:AD:DP:GQ:PL    1/1:1,62:63:99:1928,108,0
X    1713168    rs182457517    C    T    671.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313871    GT:AD:DP:GQ:PL    1/1:0,21:21:57.17:705,57,0
X    1714123    .    TGGGTCTGCACCGGACATGAGTGGTGAGC    T    2855.08    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=427.4056;IndelType=D;MQ=29.0;MQ0=0;QD=167.95;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313871    GT:AD:DP:GQ:PL    1/1:4,13:17:39.13:2897,39,0
X    1714613    rs192227703    C    T    40.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=13.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313871    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:72,6,0
X    1718008    rs144226369    T    G    305.60    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.883;DB;DP=23;Dels=0.0;FS=2.57;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.244;QD=13.29;ReadPosRankSum=1.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313871    GT:AD:DP:GQ:PL    0/1:10,13:23:99:336,0,227
X    1718351    .    G    A    163.86    PASS    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=0.688;DP=22;Dels=0.0;FS=4.867;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;MQRankSum=0.253;QD=7.45;ReadPosRankSum=1.123;SNPEFF_AMINO_ACID_CHANGE=R393H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1718085_1719196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381261    GT:AD:DP:GQ:PL    0/1:13,8:22:99:194,0,376
X    1718360    rs146889818    G    A    151.84    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.289;DB;DP=19;Dels=0.0;FS=4.832;HRun=0;HaplotypeScore=0.0;MQ=57.53;MQ0=0;MQRankSum=-0.619;QD=7.99;ReadPosRankSum=0.95;SNPEFF_AMINO_ACID_CHANGE=R396H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1718085_1719196;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381261    GT:AD:DP:GQ:PL    0/1:11,8:19:99:182,0,316
X    1718647    rs144401031    G    A    50.36    PASS    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=1.099;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;MQRankSum=1.437;QD=3.87;ReadPosRankSum=-1.606;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000313871    GT:AD:DP:GQ:PL    0/1:10,3:13:80.35:80,0,332
X    1719897    rs144881287    C    G    51.10    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.683;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.001;QD=5.11;ReadPosRankSum=0.573;SNPEFF_AMINO_ACID_CHANGE=P500A;SNPEFF_CODON_CHANGE=Ccg/Gcg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1719552_1721407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313871    GT:AD:DP:GQ:PL    0/1:6,4:10:81.10:81,0,215
X    1720422    rs184322445    C    T    179.91    PASS    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.067;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9995;MQ=57.39;MQ0=0;MQRankSum=-0.762;QD=19.99;ReadPosRankSum=1.666;SNPEFF_AMINO_ACID_CHANGE=R675C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_1719552_1721407;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AKAP17A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000313871    GT:AD:DP:GQ:PL    0/1:2,7:9:23.71:210,0,24
X    1733994    rs146444572    T    C    62.96    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.3;DB;DP=7;Dels=0.0;FS=3.68;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.55;QD=8.99;ReadPosRankSum=0.55;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    0/1:4,3:7:92.95:93,0,146
X    1734386    rs148834426    T    A    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
X    1743087    rs142722686    T    C    1183.76    PASS    AB=0.535;AC=1;AF=0.50;AN=2;BaseQRankSum=4.592;DB;DP=87;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.47;MQ0=0;MQRankSum=0.511;QD=13.61;ReadPosRankSum=-1.758;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    0/1:46,40:87:99:1214,0,1476
X    1746526    .    C    CGAAAT    1151.82    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.877;DP=61;FS=0.0;HRun=0;HaplotypeScore=280.3356;IndelType=I;MQ=62.61;MQ0=0;MQRankSum=3.631;QD=18.88;ReadPosRankSum=-1.018;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    0/1:42,16:61:99:1191,0,732
X    1746829    rs191084115    A    G    465.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:499,36,0
X    1746850    rs150258678    A    G    329.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:363,27,0
X    1751909    .    GA    G    595.40    PASS    AC=2;AF=1.00;AN=2;DP=22;FS=0.0;HRun=8;HaplotypeScore=53.4305;IndelType=D;MQ=60.49;MQ0=0;QD=27.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    1/1:0,22:22:66.11:637,66,0
X    1755236    rs148581480    G    A    987.37    PASS    AB=0.407;AC=1;AF=0.50;AN=2;BaseQRankSum=3.433;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;MQRankSum=-1.119;QD=18.28;ReadPosRankSum=0.367;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    0/1:22,32:54:99:1017,0,551
X    1755666    rs146453995    C    T    110.81    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=18.47;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    0/1:2,4:6:56.50:141,0,57
X    1761554    rs191165639    G    C    106.43    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=2.383;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.133;QD=10.64;ReadPosRankSum=1.447;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ASMT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381229    GT:AD:DP:GQ:PL    0/1:6,4:10:99:136,0,175
X    2139200    rs185574506    T    C    999.67    PASS    AB=0.608;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.114;DB;DP=102;Dels=0.0;FS=2.744;HRun=0;HaplotypeScore=3.5217;MQ=59.59;MQ0=0;MQRankSum=0.36;QD=9.8;ReadPosRankSum=-0.723;SNPEFF_AMINO_ACID_CHANGE=H292R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2137557_2139270;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:62,40:102:99:1030,0,1817
X    2161129    rs143173259    C    G    1723.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.15;SNPEFF_AMINO_ACID_CHANGE=V224L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2161103_2161271;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412516    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1757,129,0
X    2184563    rs190910288    G    A    291.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.63;MQ0=0;QD=36.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441131    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:324,24,0
X    2209672    rs184008678    C    G    1230.78    PASS    AB=0.567;AC=1;AF=0.50;AN=2;BaseQRankSum=0.67;DB;DP=104;Dels=0.0;FS=1.118;HRun=0;HaplotypeScore=7.0388;MQ=59.3;MQ0=0;MQRankSum=0.263;QD=11.83;ReadPosRankSum=0.423;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:59,45:104:99:1261,0,1909
X    2209675    rs188949287    G    C    1572.83    PASS    AB=0.433;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.39;DB;DP=97;Dels=0.0;FS=1.245;HRun=0;HaplotypeScore=6.8541;MQ=59.2;MQ0=0;MQRankSum=0.331;QD=16.21;ReadPosRankSum=-0.339;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:42,55:97:99:1603,0,1317
X    2209750    .    CT    C    300.75    PASS    AC=2;AF=1.00;AN=2;DP=28;FS=0.0;HRun=11;HaplotypeScore=204.5823;IndelType=D;MQ=58.63;MQ0=0;QD=10.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    1/1:13,13:28:41.85:343,42,0
X    2209750    .    C    G    33.60    HaplotypeScoreFilter13;QDFilter2    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=2.546;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=19.0023;MQ=58.63;MQ0=0;MQRankSum=1.517;QD=1.2;ReadPosRankSum=1.312;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:19,9:28:63.59:64,0,510
X    2238534    .    G    A    165.32    MQFilter40    AC=2;AF=1.00;AN=2;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.77;MQ0=0;QD=11.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    1/1:0,15:15:21.02:198,21,0
X    2238538    .    T    C    165.32    MQFilter40    AC=2;AF=1.00;AN=2;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=26.77;MQ0=0;QD=11.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    1/1:0,15:15:21.02:198,21,0
X    2238549    .    T    C    247.73    MQFilter40    AC=2;AF=1.00;AN=2;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=33.93;MQ0=0;QD=13.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    1/1:0,19:19:27.04:281,27,0
X    2238557    .    C    G    142.13    PASS    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.147;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.81;MQ=43.0;MQ0=0;MQRankSum=-0.491;QD=5.69;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:12,13:25:99:172,0,199
X    2238611    .    G    A    1661.47    PASS    AC=2;AF=1.00;AN=2;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=55.74;MQ0=0;QD=34.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1694,129,0
X    2238893    rs191431457    A    G    460.87    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.087;DB;DP=31;Dels=0.0;FS=3.153;HRun=0;HaplotypeScore=0.8941;MQ=59.25;MQ0=0;MQRankSum=-0.059;QD=14.87;ReadPosRankSum=-0.889;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:16,15:31:99:491,0,544
X    2326742    .    G    GA    188.96    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.473;DP=17;FS=0.0;HRun=11;HaplotypeScore=39.0179;IndelType=I;MQ=61.19;MQ0=0;MQRankSum=-0.059;QD=10.5;ReadPosRankSum=0.059;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:9,9:17:94.35:228,0,94
X    2326917    .    C    CA    119.19    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=0.572;DP=9;FS=0.0;HRun=11;HaplotypeScore=37.9092;IndelType=I;MQ=58.04;MQ0=0;MQRankSum=1.067;QD=13.24;ReadPosRankSum=-1.589;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:3,6:9:22.43:158,0,22
X    2343183    .    G    GA    518.08    PASS    AB=0.684;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.935;DP=54;FS=1.688;HRun=13;HaplotypeScore=278.5795;IndelType=I;MQ=57.3;MQ0=0;MQRankSum=0.412;QD=9.59;ReadPosRankSum=0.171;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:25,24:54:99:557,0,251
X    2343454    rs186894824    T    A    144.68    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.495;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.495;QD=20.67;ReadPosRankSum=-0.198;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DHRSX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334651    GT:AD:DP:GQ:PL    0/1:2,5:7:64.94:175,0,65
X    2406530    rs140572058    A    G    41.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBED1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461691    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
X    2408437    rs142867077    G    A    435.78    PASS    AB=0.484;AC=1;AF=0.50;AN=2;BaseQRankSum=1.618;DB;DP=31;Dels=0.0;FS=1.617;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;MQRankSum=-1.203;QD=14.06;ReadPosRankSum=-0.954;SNPEFF_AMINO_ACID_CHANGE=D108;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2406227_2408813;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZBED1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381218    GT:AD:DP:GQ:PL    0/1:15,16:31:99:466,0,423
X    2609749    rs145341989    T    C    479.06    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.306;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.714;QD=28.18;ReadPosRankSum=-0.714;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381180    GT:AD:DP:GQ:PL    1/1:1,16:17:3.39:509,3,0
X    2609983    rs150622485    T    C    779.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.07;MQ0=0;QD=31.19;SNPEFF_AMINO_ACID_CHANGE=F74;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2609829_2610291;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381180    GT:AD:DP:GQ:PL    1/1:0,25:25:66.18:813,66,0
X    2632272    rs140095930    A    T    298.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381184    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
X    2635489    rs193237333    G    C    202.99    PASS    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9993;MQ=60.0;MQ0=0;MQRankSum=0.742;QD=29.0;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381184    GT:AD:DP:GQ:PL    0/1:1,6:7:15.91:233,0,16
X    2637439    .    T    TC    198.67    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=4;HaplotypeScore=12.6764;IndelType=I;MQ=63.51;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381184    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:241,18,0
X    2640910    rs187841346    C    T    41.55    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.736;QD=13.85;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381184    GT:AD:DP:GQ:PL    0/1:1,2:3:20.60:72,0,21
X    2641202    rs141468585    A    C    106.61    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=1.38;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.0;QD=17.77;ReadPosRankSum=0.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381184    GT:AD:DP:GQ:PL    0/1:2,4:6:62.50:137,0,62
X    2645366    rs149461644    G    C    1316.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=G170R;SNPEFF_CODON_CHANGE=Ggg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2645334_2645384;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381184    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1350,111,0
X    2651566    rs139833072    C    T    74.94    PASS    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=18.74;ReadPosRankSum=-0.727;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381177    GT:AD:DP:GQ:PL    0/1:1,3:4:15.63:105,0,16
X    2656180    rs143891818    T    C    2349.89    PASS    AB=0.474;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.609;DB;DP=155;Dels=0.01;FS=1.317;HRun=0;HaplotypeScore=8.282;MQ=59.56;MQ0=0;MQRankSum=0.667;QD=15.06;ReadPosRankSum=1.979;SNPEFF_AMINO_ACID_CHANGE=I37T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2655922_2656297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381177    GT:AD:DP:GQ:PL    0/1:73,81:155:99:2380,0,2359
X    2656258    rs147273115    G    A    2527.23    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.052;DB;DP=186;Dels=0.0;FS=1.83;HRun=1;HaplotypeScore=4.922;MQ=59.63;MQ0=0;MQRankSum=-0.826;QD=13.59;ReadPosRankSum=0.038;SNPEFF_AMINO_ACID_CHANGE=D149N;SNPEFF_CODON_CHANGE=Gac/Aac;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2656241_2656297;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000381187    GT:AD:DP:GQ:PL    0/1:96,90:186:99:2557,0,2799
X    2656435    rs150035024    G    A    302.43    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.154;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.021;QD=15.12;ReadPosRankSum=-0.491;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381184    GT:AD:DP:GQ:PL    0/1:10,10:20:99:332,0,355
X    2688451    rs141144679    T    C    355.99    PASS    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=0.912;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=4.1941;MQ=57.66;MQ0=0;MQRankSum=-0.38;QD=17.8;ReadPosRankSum=1.064;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381174    GT:AD:DP:GQ:PL    0/1:9,11:20:99:386,0,300
X    2688542    rs147341525    T    C    641.14    PASS    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=2.054;DB;DP=48;Dels=0.0;FS=1.771;HRun=1;HaplotypeScore=0.6651;MQ=60.0;MQ0=0;MQRankSum=1.139;QD=13.36;ReadPosRankSum=-0.649;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381174    GT:AD:DP:GQ:PL    0/1:23,25:48:99:671,0,784
X    2692597    rs145860384    T    C    295.71    PASS    AB=0.412;AC=1;AF=0.50;AN=2;BaseQRankSum=3.07;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.318;QD=17.39;ReadPosRankSum=0.318;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381174    GT:AD:DP:GQ:PL    0/1:7,10:17:99:326,0,223
X    2715425    rs112841345    A    G    173.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381174    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:206,15,0
X    2724760    rs111382948    T    C    1059.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_AMINO_ACID_CHANGE=L131P;SNPEFF_CODON_CHANGE=cTc/cCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2724742_2724786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000419513    GT:AD:DP:GQ:PL    1/1:0,34:34:84.22:1093,84,0
X    2726396    rs6567645    A    G    166.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381174    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
X    2729281    rs5939336    A    G    396.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000519244    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:430,33,0
X    2729540    rs11439714    T    TA    311.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=11;HaplotypeScore=43.4561;IndelType=I;MQ=60.72;MQ0=0;QD=20.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509484    GT:AD:DP:GQ:PL    1/1:3,11:15:36.02:354,36,0
X    2732356    rs3830299    C    CT    100.39    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=0.736;DB;DP=7;FS=0.0;HRun=10;HaplotypeScore=21.583;IndelType=I;MQ=56.62;MQ0=0;MQRankSum=0.736;QD=14.34;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509484    GT:AD:DP:GQ:PL    0/1:2,5:7:6.60:139,0,7
X    2748253    rs6642032    G    C    123.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=20.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000522988    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:156,12,0
X    2774478    rs5939132    A    G    348.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.43;MQ0=0;QD=29.03;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000520904    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:381,33,0
X    2774760    rs142907396    CTCTA    C    469.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=68.9797;IndelType=D;MQ=51.13;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GYG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469234    GT:AD:DP:GQ:PL    1/1:4,10:14:30.10:512,30,0
X    2832661    rs111318153    A    T    74.05    QDFilter2    AB=0.755;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.035;DB;DP=49;Dels=0.0;FS=4.977;HRun=4;HaplotypeScore=0.0;MQ=53.34;MQ0=0;MQRankSum=-5.034;QD=1.51;ReadPosRankSum=-1.453;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381154    GT:AD:DP:GQ:PL    0/1:37,12:49:99:104,0,1270
X    2832668    rs139484145    A    G    138.03    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=1.056;DB;DP=53;Dels=0.0;FS=1.796;HRun=0;HaplotypeScore=0.0;MQ=52.86;MQ0=0;MQRankSum=-4.966;QD=2.6;ReadPosRankSum=-2.281;SNPEFF_AMINO_ACID_CHANGE=*383Q;SNPEFF_CODON_CHANGE=Tag/Cag;SNPEFF_EFFECT=STOP_LOST;SNPEFF_EXON_ID=exon_X_2831655_2832814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:38,15:53:99:168,0,1298
X    2832696    rs113031742    T    C    419.47    PASS    AB=0.656;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.558;DB;DP=61;Dels=0.0;FS=13.707;HRun=1;HaplotypeScore=0.0;MQ=52.06;MQ0=0;MQRankSum=-5.442;QD=6.88;ReadPosRankSum=-1.51;SNPEFF_AMINO_ACID_CHANGE=P373;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2831655_2832814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:40,21:61:99:449,0,1235
X    2832708    rs112408163    G    T    474.26    PASS    AB=0.635;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.163;DB;DP=63;Dels=0.0;FS=14.919;HRun=0;HaplotypeScore=0.0;MQ=52.16;MQ0=0;MQRankSum=-5.275;QD=7.53;ReadPosRankSum=-0.393;SNPEFF_AMINO_ACID_CHANGE=P369;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2831655_2832814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:40,23:63:99:504,0,1257
X    2832715    rs73632953    T    C    458.84    PASS    AB=0.652;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.05;DB;DP=66;Dels=0.0;FS=17.152;HRun=1;HaplotypeScore=0.0;MQ=52.54;MQ0=0;MQRankSum=-5.221;QD=6.95;ReadPosRankSum=1.211;SNPEFF_AMINO_ACID_CHANGE=K367R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2831655_2832814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:43,23:66:99:489,0,1390
X    2832739    rs34494682    C    T    131.29    QDFilter2    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.413;DB;DP=70;Dels=0.0;FS=16.588;HRun=0;HaplotypeScore=0.0;MQ=53.22;MQ0=0;MQRankSum=4.201;QD=1.88;ReadPosRankSum=-2.209;SNPEFF_AMINO_ACID_CHANGE=R359H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2831655_2832814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:23,46:70:99:161,0,589
X    2832742    rs211648    G    C    898.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.49;MQ0=0;QD=13.02;SNPEFF_AMINO_ACID_CHANGE=T358R;SNPEFF_CODON_CHANGE=aCa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2831655_2832814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    1/1:0,69:69:92.96:932,93,0
X    2832771    rs78142040    C    T    663.44    PASS    AB=0.61;AC=1;AF=0.50;AN=2;BaseQRankSum=2.073;DB;DP=77;Dels=0.0;FS=4.932;HRun=1;HaplotypeScore=0.9947;MQ=53.56;MQ0=0;MQRankSum=-3.975;QD=8.62;ReadPosRankSum=-2.0;SNPEFF_AMINO_ACID_CHANGE=A348;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2831655_2832814;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:47,30:77:99:693,0,1460
X    2832787    rs73632954    A    G    623.38    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=1.41;DB;DP=70;Dels=0.0;FS=0.967;HRun=0;HaplotypeScore=1.5731;MQ=55.42;MQ0=0;MQRankSum=-1.937;QD=8.91;ReadPosRankSum=-0.061;SNPEFF_AMINO_ACID_CHANGE=V343A;SNPEFF_CODON_CHANGE=gTt/gCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2831655_2832814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:45,25:70:99:653,0,1509
X    2832860    rs73632955    G    A    457.20    PASS    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.77;DB;DP=43;Dels=0.0;FS=1.949;HRun=2;HaplotypeScore=0.9469;MQ=54.86;MQ0=0;MQRankSum=-2.213;QD=10.63;ReadPosRankSum=0.183;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:24,19:43:99:487,0,784
X    2832871    rs115343387    A    G    394.35    PASS    AB=0.579;AC=1;AF=0.50;AN=2;BaseQRankSum=1.375;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9469;MQ=54.15;MQ0=0;MQRankSum=-3.326;QD=10.38;ReadPosRankSum=0.813;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:22,16:38:99:424,0,726
X    2832880    .    A    AAT    604.66    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=4.539;DP=30;FS=3.9;HRun=0;HaplotypeScore=232.1842;IndelType=I;MQ=52.3;MQ0=0;MQRankSum=-2.478;QD=20.16;ReadPosRankSum=0.241;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:17,13:30:99:644,0,620
X    2832920    .    T    TTA    237.18    PASS    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.843;DP=13;FS=0.0;HRun=0;HaplotypeScore=152.4971;IndelType=I;MQ=47.35;MQ0=0;MQRankSum=-2.843;QD=18.24;ReadPosRankSum=1.073;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:8,5:13:99:276,0,219
X    2832937    .    A    G    56.18    PASS    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=44.1;MQ0=0;MQRankSum=-2.219;QD=6.24;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:4,5:9:86.17:86,0,138
X    2833506    rs211649    G    C    388.82    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.505;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.88;MQ0=0;MQRankSum=2.526;QD=25.92;ReadPosRankSum=-1.083;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494870    GT:AD:DP:GQ:PL    1/1:3,12:15:2.68:419,3,0
X    2833628    .    A    C    75.41    SnpCluster    AB=0.757;AC=1;AF=0.50;AN=2;BaseQRankSum=2.46;DP=37;Dels=0.0;FS=6.808;HRun=2;HaplotypeScore=0.734;MQ=54.39;MQ0=0;MQRankSum=-3.699;QD=2.04;ReadPosRankSum=-1.08;SNPEFF_AMINO_ACID_CHANGE=G323;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2833597_2833733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:28,9:37:99:105,0,902
X    2833631    .    A    G    62.45    QDFilter2;SnpCluster    AB=0.769;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.117;DP=39;Dels=0.0;FS=7.073;HRun=0;HaplotypeScore=1.399;MQ=54.7;MQ0=0;MQRankSum=-4.35;QD=1.6;ReadPosRankSum=-0.517;SNPEFF_AMINO_ACID_CHANGE=Y322;SNPEFF_CODON_CHANGE=taT/taC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2833597_2833733;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:30,9:39:92.44:92,0,1061
X    2833638    .    C    T    135.15    SnpCluster    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.013;DP=39;Dels=0.0;FS=1.725;HRun=0;HaplotypeScore=0.6651;MQ=54.04;MQ0=0;MQRankSum=-4.326;QD=3.47;ReadPosRankSum=0.08;SNPEFF_AMINO_ACID_CHANGE=G320D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2833597_2833733;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:29,10:39:99:165,0,978
X    2833643    rs115332247    C    A    138.16    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.322;DB;DP=38;Dels=0.0;FS=3.775;HRun=0;HaplotypeScore=0.6651;MQ=53.2;MQ0=0;MQRankSum=-4.377;QD=3.64;ReadPosRankSum=-0.257;SNPEFF_AMINO_ACID_CHANGE=Q318H;SNPEFF_CODON_CHANGE=caG/caT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2833597_2833733;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:27,11:38:99:168,0,948
X    2833856    rs211650    T    C    126.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=21.14;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000494870    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:159,12,0
X    2835863    rs78034736    G    T    241.96    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.868;DB;DP=22;Dels=0.0;FS=2.103;HRun=0;HaplotypeScore=0.0;MQ=54.52;MQ0=0;MQRankSum=-1.202;QD=11.0;ReadPosRankSum=0.134;SNPEFF_AMINO_ACID_CHANGE=A282D;SNPEFF_CODON_CHANGE=gCt/gAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2835845_2836268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:13,9:22:99:272,0,438
X    2835964    rs73632972    G    A    103.03    PASS    AB=0.658;AC=1;AF=0.50;AN=2;BaseQRankSum=0.438;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=54.45;MQ0=0;MQRankSum=-2.742;QD=2.71;ReadPosRankSum=-1.574;SNPEFF_AMINO_ACID_CHANGE=F248;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2835845_2836268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:25,13:38:99:133,0,765
X    2835998    rs113556864    CCCACGCCGG    C    408.30    PASS    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=3.845;DB;DP=28;FS=1.983;HRun=0;HaplotypeScore=353.5957;IndelType=D;MQ=54.4;MQ0=0;MQRankSum=-3.901;QD=14.58;ReadPosRankSum=-0.692;SNPEFF_AMINO_ACID_CHANGE=AGVG234G;SNPEFF_CODON_CHANGE=gccggcgtgggc/ggc;SNPEFF_EFFECT=CODON_CHANGE_PLUS_CODON_DELETION;SNPEFF_EXON_ID=exon_X_2835845_2836268;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:21,7:28:99:447,0,2679
X    2836047    rs67359049    C    T    31.69    QDFilter2    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=3.142;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.45;MQ0=0;MQRankSum=-2.269;QD=1.58;ReadPosRankSum=0.96;SNPEFF_AMINO_ACID_CHANGE=G221S;SNPEFF_CODON_CHANGE=Ggt/Agt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2835845_2836268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:15,5:20:61.68:62,0,481
X    2836060    rs113318393    G    A    47.83    PASS    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=0.778;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;MQRankSum=-2.333;QD=3.42;ReadPosRankSum=0.778;SNPEFF_AMINO_ACID_CHANGE=A216;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2835845_2836268;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:10,4:14:77.83:78,0,381
X    2836181    rs73632975    A    T    54.32    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=2.404;DB;DP=12;Dels=0.0;FS=3.09;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-1.479;QD=4.53;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=M176K;SNPEFF_CODON_CHANGE=aTg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2835845_2836268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:9,3:12:84.32:84,0,296
X    2836184    rs73632976    C    T    45.53    PASS    AB=0.75;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.034;DB;DP=12;Dels=0.0;FS=3.09;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;MQRankSum=-0.37;QD=3.79;ReadPosRankSum=-0.37;SNPEFF_AMINO_ACID_CHANGE=G175D;SNPEFF_CODON_CHANGE=gGc/gAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2835845_2836268;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    0/1:9,3:12:75.52:76,0,299
X    2847017    rs3747393    T    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217890    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
X    2852951    rs11222    G    A    109.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.86;MQ0=0;QD=21.99;SNPEFF_AMINO_ACID_CHANGE=N519;SNPEFF_CODON_CHANGE=aaC/aaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2852699_2853231;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSE;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540563    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:142,12,0
X    2856155    rs35143646    C    T    1228.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=58.41;MQ0=0;QD=27.93;SNPEFF_AMINO_ACID_CHANGE=G379S;SNPEFF_CODON_CHANGE=Ggc/Agc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_2856136_2856298;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSE;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000540563    GT:AD:DP:GQ:PL    1/1:0,44:44:99:1262,99,0
X    2878296    rs5982940    T    C    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARSE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381134    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
X    3242088    rs140541236    C    T    452.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.53;MQ0=0;QD=26.59;SNPEFF_AMINO_ACID_CHANGE=E546;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_3238049_3243016;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MXRA5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000217939    GT:AD:DP:GQ:PL    1/1:0,17:17:36.11:485,36,0
X    3530194    rs2287236    G    T    234.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000425240    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:267,21,0
X    3533962    rs2302750    T    C    166.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=27.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262848    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:199,18,0
X    3592725    rs10871864    G    A    733.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.05;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=P83;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_3592639_3592807;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKX;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262848    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:766,60,0
X    3592847    rs7880937    C    T    547.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.29;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRKX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262848    GT:AD:DP:GQ:PL    1/1:1,17:18:42.14:580,42,0
X    6451856    .    A    G    1051.03    HaplotypeScoreFilter13;MQFilter40    AB=0.764;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.824;DP=226;Dels=0.0;FS=51.561;HRun=1;HaplotypeScore=44.1954;MQ=26.34;MQ0=90;MQRankSum=3.84;QD=4.65;ReadPosRankSum=-1.465;SNPEFF_AMINO_ACID_CHANGE=L144P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6451786_6451929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398729    GT:AD:DP:GQ:PL    0/1:172,53:226:99:1081,0,1713
X    6451864    rs143093189    C    T    461.45    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.871;AC=1;AF=0.50;AN=2;BaseQRankSum=1.887;DB;DP=225;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=69.7185;MQ=24.01;MQ0=105;MQRankSum=1.41;QD=2.05;ReadPosRankSum=-2.584;SNPEFF_AMINO_ACID_CHANGE=E141;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6451786_6451929;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398729    GT:AD:DP:GQ:PL    0/1:195,29:225:99:491,0,2026
X    6451869    rs35874450    C    T    370.06    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.873;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.067;DB;DP=229;Dels=0.0;FS=4.375;HRun=0;HaplotypeScore=31.8702;MQ=22.41;MQ0=111;MQRankSum=-1.412;QD=1.62;ReadPosRankSum=-4.197;SNPEFF_AMINO_ACID_CHANGE=V140M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6451786_6451929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398729    GT:AD:DP:GQ:PL    0/1:200,29:229:99:400,0,1966
X    6451872    rs142829199    C    G    1271.74    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.718;AC=1;AF=0.50;AN=2;BaseQRankSum=4.329;DB;DP=234;Dels=0.0;FS=2.814;HRun=1;HaplotypeScore=50.8032;MQ=22.14;MQ0=115;MQRankSum=3.001;QD=5.43;ReadPosRankSum=-1.477;SNPEFF_AMINO_ACID_CHANGE=E139Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6451786_6451929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398729    GT:AD:DP:GQ:PL    0/1:168,66:234:99:1302,0,1028
X    6451886    rs143802324    A    G    605.26    MQFilter40    AB=0.804;AC=1;AF=0.50;AN=2;BaseQRankSum=2.199;DB;DP=231;Dels=0.0;FS=5.359;HRun=1;HaplotypeScore=8.623;MQ=19.13;MQ0=124;MQRankSum=1.539;QD=2.62;ReadPosRankSum=2.178;SNPEFF_AMINO_ACID_CHANGE=L134P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6451786_6451929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398729    GT:AD:DP:GQ:PL    0/1:185,45:231:99:635,0,1402
X    6451929    .    C    T    1662.99    MQFilter40    AB=0.581;AC=1;AF=0.50;AN=2;BaseQRankSum=0.478;DP=222;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.8566;MQ=15.66;MQ0=126;MQRankSum=0.908;QD=7.49;ReadPosRankSum=3.617;SNPEFF_AMINO_ACID_CHANGE=V120M;SNPEFF_CODON_CHANGE=Gtg/Atg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6451786_6451929;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000398729    GT:AD:DP:GQ:PL    0/1:129,93:222:52.72:1693,0,53
X    6451984    rs141442978    T    C    55.51    MQFilter40;QDFilter2    AB=0.915;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.087;DB;DP=189;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=4.357;MQ=10.28;MQ0=143;MQRankSum=-2.272;QD=0.29;ReadPosRankSum=-0.496;SNPEFF_AMINO_ACID_CHANGE=E121;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6451659_6452244;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381089    GT:AD:DP:GQ:PL    0/1:173,16:189:85.51:86,0,556
X    6451989    .    C    T    340    MQFilter40;QDFilter2    AB=0.891;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.196;DP=184;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.7803;MQ=9.45;MQ0=143;MQRankSum=3.612;QD=1.85;ReadPosRankSum=-1.213;SNPEFF_EFFECT=SPLICE_SITE_DONOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000398729    GT:AD:DP:GQ:PL    0/1:164,20:184:99:370,0,109
X    6452604    .    C    A    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=10.59;MQ0=13;QD=2.38;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_X_6452437_6452684;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381089    GT:AD:DP:GQ:PL    1/1:1,14:15:6.02:67,6,0
X    6995315    rs2379206    C    T    1173.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=34.52;SNPEFF_AMINO_ACID_CHANGE=P109;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6995261_6995490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000412827    GT:AD:DP:GQ:PL    1/1:0,34:34:87.29:1207,87,0
X    6995417    rs2379207    C    T    764.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.13;MQ0=0;QD=30.59;SNPEFF_AMINO_ACID_CHANGE=A118;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6995261_6995490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381077    GT:AD:DP:GQ:PL    1/1:0,25:25:66.11:798,66,0
X    6995438    rs1803675    C    T    594.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=L111;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_6995261_6995490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000381077    GT:AD:DP:GQ:PL    1/1:0,20:20:48.14:628,48,0
X    7023678    rs1131197    G    A    1378.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.45;SNPEFF_AMINO_ACID_CHANGE=T104M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_7023661_7023880;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HDHD1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000544385    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1411,102,0
X    7811645    rs6639946    C    G    202.99    MQFilter40;QDFilter2    AB=0.884;AC=1;AF=0.50;AN=2;BaseQRankSum=0.539;DB;DP=146;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=16.44;MQ0=99;MQRankSum=-1.383;QD=1.39;ReadPosRankSum=0.398;SNPEFF_AMINO_ACID_CHANGE=A70G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_7811539_7811793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341408    GT:AD:DP:GQ:PL    0/1:129,17:146:99:233,0,861
X    7812017    rs78342118    C    T    228.64    QDFilter2    AB=0.793;AC=1;AF=0.50;AN=2;BaseQRankSum=4.145;DB;DP=213;DS;Dels=0.0;FS=14.49;HRun=0;HaplotypeScore=1.4725;MQ=40.69;MQ0=18;MQRankSum=-5.911;QD=1.07;ReadPosRankSum=4.105;SNPEFF_AMINO_ACID_CHANGE=P174L;SNPEFF_CODON_CHANGE=cCg/cTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_7811854_7812057;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000341408    GT:AD:DP:GQ:PL    0/1:169,44:213:99:259,0,4211
X    7812197    .    T    C    94.44    MQFilter40    AB=0.727;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.163;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.5655;MQ=22.51;MQ0=8;MQRankSum=0.323;QD=4.29;ReadPosRankSum=-2.259;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341408    GT:AD:DP:GQ:PL    0/1:16,6:22:99:124,0,192
X    7890215    rs1183732    C    T    211.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNPLA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381042    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:244,18,0
X    8138080    rs1058239    G    C    2299.14    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=36.69;MQ0=2;QD=32.84;SNPEFF_AMINO_ACID_CHANGE=T138S;SNPEFF_CODON_CHANGE=aCc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_8137989_8138390;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317103    GT:AD:DP:GQ:PL    1/1:0,70:70:99:2332,184,0
X    8138160    rs1058238    T    C    1029.50    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DB;DP=42;Dels=0.0;FS=8.644;HRun=1;HaplotypeScore=0.9958;MQ=35.58;MQ0=0;MQRankSum=1.21;QD=24.51;ReadPosRankSum=0.962;SNPEFF_AMINO_ACID_CHANGE=E111;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_8137989_8138390;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317103    GT:AD:DP:GQ:PL    1/1:4,38:42:84.25:1063,84,0
X    8138168    rs144469326    C    G    665.46    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DB;DP=33;Dels=0.0;FS=6.532;HRun=1;HaplotypeScore=0.0;MQ=34.59;MQ0=0;MQRankSum=1.503;QD=20.17;ReadPosRankSum=0.301;SNPEFF_AMINO_ACID_CHANGE=E109Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_8137989_8138390;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317103    GT:AD:DP:GQ:PL    1/1:4,29:33:54.17:698,54,0
X    8138284    rs41309545    G    C    90.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=11.31;MQ0=28;QD=2.66;SNPEFF_AMINO_ACID_CHANGE=A70G;SNPEFF_CODON_CHANGE=gCg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_8137989_8138390;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317103    GT:AD:DP:GQ:PL    1/1:28,6:34:12.01:123,12,0
X    8434256    .    A    G    166.98    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.499;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=7.0096;MQ=10.52;MQ0=38;MQRankSum=0.269;QD=2.35;ReadPosRankSum=-2.264;SNPEFF_AMINO_ACID_CHANGE=E141;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_8434182_8434361;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VCX3B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440654    GT:AD:DP:GQ:PL    1/1:28,43:71:2.33:197,2,0
X    8763582    .    T    C    186.25    PASS    AC=2;AF=1.00;AN=2;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.64;MQ0=0;QD=26.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM9A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381003    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:219,18,0
X    9000594    rs149136773    TG    T    182.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=130.9938;IndelType=D;MQ=53.39;MQ0=0;QD=8.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM9B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327220    GT:AD:DP:GQ:PL    1/1:8,13:20:33.31:225,33,0
X    9622450    rs34335400    T    TAGA    325.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=14.493;IndelType=I;MQ=60.0;MQ0=0;QD=54.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441088    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:368,18,0
X    9655923    rs2521583    C    T    41.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.84;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422314    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
X    9655927    rs2732886    G    A    87    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422314    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
X    9659766    rs2301675    G    A    294.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=10.9964;MQ=59.06;MQ0=0;QD=22.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415293    GT:AD:DP:GQ:PL    1/1:0,13:13:33.03:327,33,0
X    9659767    rs3214138    T    TG    368.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=6;HaplotypeScore=69.9228;IndelType=I;MQ=58.98;MQ0=0;QD=30.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415293    GT:AD:DP:GQ:PL    1/1:1,11:12:33.10:411,33,0
X    9659863    rs2301674    G    A    211.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000415293    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
X    9661110    rs3747431    C    G    474.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217964    GT:AD:DP:GQ:PL    1/1:0,14:14:39.12:508,39,0
X    9661165    rs3747430    G    T    772.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217964    GT:AD:DP:GQ:PL    1/1:0,26:27:69.18:805,69,0
X    9665368    rs2239411    C    A    1128.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217964    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1162,87,0
X    9672793    rs2283694    G    A    35.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=17.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBL1X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217964    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:67,6,0
X    9859098    rs6640543    A    G    191.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.97;SNPEFF_AMINO_ACID_CHANGE=P133;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_9859017_9859148;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380913    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:225,18,0
X    9859197    rs6640544    A    G    84.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380913    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
X    9862275    rs4830671    G    C    83.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380913    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:116,9,0
X    9862280    rs4830672    A    G    79.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380913    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:112,9,0
X    10062079    rs5934746    T    A    1307.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380861    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1340,102,0
X    10062163    rs5934747    G    C    1923.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380861    GT:AD:DP:GQ:PL    1/1:0,57:59:99:1957,144,0
X    10066387    rs5933801    G    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380861    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
X    10085674    rs6530368    T    C    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=18.05;SNPEFF_AMINO_ACID_CHANGE=D189;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_10085164_10085729;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000543293    GT:AD:DP:GQ:PL    1/1:0,5:5:12.02:123,12,0
X    10102386    rs149110574    T    C    1287.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WWC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380861    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1320,99,0
X    10166198    rs2240019    A    C    209.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380829    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:243,18,0
X    11313027    rs946252    T    C    1168.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AMELX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000348912    GT:AD:DP:GQ:PL    1/1:1,30:31:90.29:1201,90,0
X    11776994    .    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MSL3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000312196    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    12628049    rs2304604    T    C    753.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304087    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:786,60,0
X    12633034    rs6654760    T    C    431.52    PASS    AB=0.059;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.123;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;MQRankSum=1.327;QD=25.38;ReadPosRankSum=-0.306;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304087    GT:AD:DP:GQ:PL    0/1:1,16:17:0.10:460,0,0
X    12693123    rs113303439    A    G    438.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304087    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:472,36,0
X    12722616    rs4469660    C    G    2182.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.62;MQ0=0;QD=36.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMPD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304087    GT:AD:DP:GQ:PL    1/1:0,60:60:99:2216,166,0
X    12809661    rs1731469    G    A    335.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.48;SNPEFF_AMINO_ACID_CHANGE=L15;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_12809474_12809738;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRPS2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000380663    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:368,27,0
X    12939928    rs2109135    T    C    1893.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=32.65;SNPEFF_AMINO_ACID_CHANGE=D923;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_12937163_12941288;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TLR8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000218032    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1927,144,0
X    12994250    rs955279    A    G    434.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=31.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMSB4X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380633    GT:AD:DP:GQ:PL    1/1:0,14:14:39.09:468,39,0
X    12994867    rs138495959    CT    C    119.28    QDFilter2    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=0.083;DB;DP=75;FS=2.021;HRun=18;HaplotypeScore=501.977;IndelType=D;MQ=51.35;MQ0=0;MQRankSum=1.411;QD=1.55;ReadPosRankSum=0.581;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMSB4X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380633    GT:AD:DP:GQ:PL    0/1:46,20:75:55.39:158,0,55
X    13056654    rs4830483    T    C    664.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM9C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333995    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:697,51,0
X    13397236    rs12557064    G    C    349.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=26.88;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GPX1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388829    GT:AD:DP:GQ:PL    1/1:0,13:13:30.09:382,30,0
X    13397315    rs4830845    A    T    232.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.17;MQ0=0;QD=33.14;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GPX1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000388829    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:265,21,0
X    13734539    rs2285633    T    C    358.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426522    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:391,30,0
X    13734919    rs35084098    C    CTTTG    778.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=45.9653;IndelType=I;MQ=53.89;MQ0=0;QD=55.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358231    GT:AD:DP:GQ:PL    1/1:3,11:14:33.11:821,33,0
X    13737928    rs3214139    TC    T    545.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=1;HaplotypeScore=36.9277;IndelType=D;MQ=60.0;MQ0=0;QD=38.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRAPPC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358231    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:588,42,0
X    13767718    rs7878592    A    G    405.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340096    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:438,33,0
X    13779409    rs112117780    A    AT    141.93    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DB;DP=14;FS=0.0;HRun=12;HaplotypeScore=45.0901;IndelType=I;MQ=59.44;MQ0=0;MQRankSum=-0.751;QD=10.14;ReadPosRankSum=-0.751;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OFD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340096    GT:AD:DP:GQ:PL    1/1:7,6:14:4.80:182,5,0
X    13785563    .    G    GA    630.54    PASS    AC=2;AF=1.00;AN=2;DP=20;FS=0.0;HRun=3;HaplotypeScore=39.8723;IndelType=I;MQ=60.54;MQ0=0;QD=31.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPM6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316715    GT:AD:DP:GQ:PL    1/1:4,16:20:48.16:673,48,0
X    13803960    rs5978663    C    T    245.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPM6B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316715    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:278,21,0
X    14862279    rs6527026    T    C    43.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.73;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FANCB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324138    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
X    15333842    rs4830529    T    A    759.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PIGA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333590    GT:AD:DP:GQ:PL    1/1:0,23:23:63.16:792,63,0
X    15792527    rs4364812    T    A    140.51    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=22.78;MQ0=6;QD=8.78;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479740    GT:AD:DP:GQ:PL    1/1:0,16:16:15.04:173,15,0
X    15794815    rs5936050    G    A    1000.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479740    GT:AD:DP:GQ:PL    1/1:0,26:26:78.22:1034,78,0
X    15800600    rs4830548    A    G    130.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318636    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:163,12,0
X    15800751    rs1808    G    A    1015.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=31.74;SNPEFF_AMINO_ACID_CHANGE=A306;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_15800608_15805747;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CA5B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000318636    GT:AD:DP:GQ:PL    1/1:0,32:32:78.23:1049,78,0
X    15817963    rs5980192    A    G    379.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307771    GT:AD:DP:GQ:PL    1/1:0,16:16:33.09:412,33,0
X    15827524    rs5980193    T    G    280.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZRSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307771    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:313,24,0
X    15863953    rs798169    A    T    670.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.14;MQ0=0;QD=33.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AP1S2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329235    GT:AD:DP:GQ:PL    1/1:0,20:20:54.18:704,54,0
X    16608793    rs1527805    G    A    200.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=33.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000359276    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:234,18,0
X    16762002    rs4830562    A    G    2217.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=58.93;MQ0=0;QD=36.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYAP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380155    GT:AD:DP:GQ:PL    1/1:0,61:61:99:2250,166,0
X    16850586    rs4828559    C    A    496.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380122    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:530,39,0
X    16859628    rs5924530    G    A    854.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_AMINO_ACID_CHANGE=Q310;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_16859551_16862640;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TXLNG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000398155    GT:AD:DP:GQ:PL    1/1:0,28:29:66.21:888,66,0
X    16871972    rs142122251    GAGA    G    958.12    PASS    AB=0.6;AC=1;AF=0.50;AN=2;BaseQRankSum=1.103;DB;DP=27;FS=0.0;HRun=0;HaplotypeScore=164.6939;IndelType=D;MQ=45.24;MQ0=0;MQRankSum=-1.576;QD=35.49;ReadPosRankSum=-0.158;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465042    GT:AD:DP:GQ:PL    0/1:9,18:27:2.94:996,0,3
X    16872015    rs66541580    AT    A    191.51    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=18;FS=0.0;HRun=13;HaplotypeScore=149.4835;IndelType=D;MQ=43.4;MQ0=0;MQRankSum=-0.935;QD=10.64;ReadPosRankSum=-0.401;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465042    GT:AD:DP:GQ:PL    1/1:6,12:18:9.56:233,10,0
X    16876980    rs4828536    G    A    710.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468092    GT:AD:DP:GQ:PL    1/1:0,23:23:57.17:744,57,0
X    16881386    rs2170084    C    T    44.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBBP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380084    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
X    17043009    rs1965051    T    C    186.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=31.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481792    GT:AD:DP:GQ:PL    1/1:0,6:6:18.03:219,18,0
X    17070688    rs933946    G    A    254.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303843    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:288,21,0
X    17092152    rs1346246    G    T    514.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303843    GT:AD:DP:GQ:PL    1/1:0,18:18:42.13:548,42,0
X    17157148    rs1946395    T    A    105.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303843    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:138,12,0
X    17167204    rs12557633    C    T    966.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=REPS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380063    GT:AD:DP:GQ:PL    1/1:0,29:29:72.24:999,72,0
X    17705850    rs5901624    C    CT    1505.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.0;HRun=3;HaplotypeScore=73.0604;IndelType=I;MQ=60.58;MQ0=0;QD=40.68;SNPEFF_EFFECT=SPLICE_SITE_ACCEPTOR;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHS;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000380057    GT:AD:DP:GQ:PL    1/1:0,36:37:99:1547,108,0
X    17710353    rs11347866    CT    C    195.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=14;HaplotypeScore=47.5634;IndelType=D;MQ=60.77;MQ0=0;QD=13.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000380057    GT:AD:DP:GQ:PL    1/1:0,12:14:36.80:238,37,0
X    17819377    rs6527818    T    C    1108.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.64;MQ0=0;QD=35.75;SNPEFF_AMINO_ACID_CHANGE=M202V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_17818171_17819845;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RAI2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000415486    GT:AD:DP:GQ:PL    1/1:0,31:31:84.28:1141,84,0
X    18631234    .    AG    A    162.23    PASS    AB=0.828;AC=1;AF=0.50;AN=2;BaseQRankSum=1.271;DP=24;FS=21.256;HRun=1;HaplotypeScore=173.6545;IndelType=D;MQ=42.22;MQ0=0;MQRankSum=-2.016;QD=6.76;ReadPosRankSum=-1.147;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CDKL5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379989    GT:AD:DP:GQ:PL    0/1:19,5:24:99:201,0,218
X    18824794    rs2239437    T    G    119.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=23.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349874    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:152,12,0
X    18844012    rs2273247    G    A    515.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=36.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=PPEF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349874    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:549,42,0
X    18929128    rs11291764    CT    C    262.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.0;HRun=13;HaplotypeScore=73.3608;IndelType=D;MQ=60.76;MQ0=0;QD=14.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379942    GT:AD:DP:GQ:PL    1/1:3,15:18:41.70:304,42,0
X    18972497    rs17313469    C    G    1002.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.58;SNPEFF_AMINO_ACID_CHANGE=E38Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_18972372_18972530;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHKA2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379942    GT:AD:DP:GQ:PL    1/1:0,26:26:78.23:1036,78,0
X    19041592    rs5909263    C    T    215.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340581    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
X    19363863    rs72074200    TCC    T    407.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=12;HaplotypeScore=118.8686;IndelType=D;MQ=56.45;MQ0=0;QD=20.4;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_X_19363854_19363937;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000379815    GT:AD:DP:GQ:PL    1/1:5,13:20:47.54:450,48,0
X    19364644    rs7883320    C    T    472.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=T25M;SNPEFF_CODON_CHANGE=aCg/aTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_19364628_19364741;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379806    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:505,39,0
X    19364803    rs12387382    A    G    906.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.23;MQ0=0;QD=30.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355808    GT:AD:DP:GQ:PL    1/1:0,30:30:75.22:939,75,0
X    19364872    rs12392955    T    A    494.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355808    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:528,42,0
X    19372431    rs66727455    G    C    53.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379805    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:85,6,0
X    19373452    rs13440874    C    T    1499.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=30.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1533,114,0
X    19373647    rs11278403    GGGCCAA    G    1099.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=150.7188;IndelType=D;MQ=38.26;MQ0=0;QD=49.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:5,17:22:54.18:1142,54,0
X    19373789    rs7058209    C    A    404.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.85;MQ0=0;QD=28.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:1,13:14:36.11:437,36,0
X    19373839    rs1126565    A    G    258.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.66;MQ0=0;QD=23.47;SNPEFF_AMINO_ACID_CHANGE=A234;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_19373804_19373875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000540249    GT:AD:DP:GQ:PL    1/1:0,11:11:24.06:291,24,0
X    19373890    rs190157093    C    T    168.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.79;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:202,15,0
X    19373967    rs7058518    C    G    70.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:102,9,0
X    19375710    rs7059233    C    T    1257.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=31.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1290,99,0
X    19377396    rs5955549    T    C    84.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.23;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
X    19377584    rs5955760    T    C    1423.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.46;MQ0=0;QD=33.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1457,111,0
X    19377881    rs709610    C    T    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
X    19378784    rs1042456    C    A    458.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=38.25;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469203    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:492,36,0
X    19378830    rs15816    G    A    518.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=30.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379804    GT:AD:DP:GQ:PL    1/1:0,17:17:42.12:551,42,0
X    19380710    rs752825    C    G    334.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379804    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
X    19380975    rs34487219    TA    T    165.11    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.604;DB;DP=40;FS=0.0;HRun=17;HaplotypeScore=296.0503;IndelType=D;MQ=55.17;MQ0=0;MQRankSum=0.178;QD=4.13;ReadPosRankSum=1.457;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDHA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379804    GT:AD:DP:GQ:PL    0/1:13,16:40:26.73:204,0,27
X    19390982    rs5955762    C    T    536.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=38.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:569,42,0
X    19413466    rs41311499    T    C    153.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:186,15,0
X    19416114    rs5955768    A    G    42.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
X    19416702    rs5955769    A    G    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    19418597    rs28417958    T    C    1536.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=39.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1569,117,0
X    19418975    rs12014676    G    C    133.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
X    19444528    rs5955777    C    G    384.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:418,30,0
X    19449839    rs5955779    A    G    176.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
X    19478294    rs5909118    T    A    623.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.54;MQ0=0;QD=31.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,20:20:54.14:656,54,0
X    19478336    rs151147544    C    CA    450.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=4;HaplotypeScore=54.2635;IndelType=I;MQ=60.9;MQ0=0;QD=37.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,12:12:36.12:493,36,0
X    19482476    rs5909299    C    T    1073.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.43;MQ0=0;QD=32.54;SNPEFF_AMINO_ACID_CHANGE=A192T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_19482331_19482524;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAP3K15;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000338883    GT:AD:DP:GQ:PL    1/1:0,33:33:84.24:1107,84,0
X    19688957    rs72525382    CA    C    66.50    PASS    AB=0.833;AC=1;AF=0.50;AN=2;BaseQRankSum=0.775;DB;DP=25;FS=4.216;HRun=15;HaplotypeScore=104.5222;IndelType=D;MQ=57.17;MQ0=0;MQRankSum=0.589;QD=2.66;ReadPosRankSum=0.031;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SH3KBP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379697    GT:AD:DP:GQ:PL    0/1:20,5:25:99:106,0,263
X    21666912    rs5901679    C    CTT    32.36    QDFilter2    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=25;HaplotypeScore=164.4452;IndelType=I;MQ=41.63;MQ0=0;QD=1.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNKSR2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379510    GT:AD:DP:GQ:PL    1/1:16,5:23:9.39:73,9,0
X    22051034    rs178710    A    G    1205.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=34.43;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_X_22050559_22051241;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,35:35:93.30:1238,93,0
X    22095386    rs57027136    A    G    75.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
X    22108423    rs12013780    G    C    210.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=35.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
X    22111912    rs6528089    G    A    97.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,4:4:12:130,12,0
X    22112345    rs6629449    G    A    173.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
X    22115197    rs58524357    A    G    527.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,14:14:42.12:561,42,0
X    22230794    rs5904513    A    G    91.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
X    22230975    rs3213493    T    C    1558.22    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.394;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;MQRankSum=0.394;QD=35.41;ReadPosRankSum=-1.417;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:1,43:44:81.63:1591,82,0
X    22239557    rs3752432    T    C    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
X    22239720    rs3752433    C    T    793.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,28:28:69.21:827,69,0
X    22263721    rs2071584    T    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHEX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379374    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
X    23398214    rs5926304    T    C    1741.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=35.55;SNPEFF_AMINO_ACID_CHANGE=C286;SNPEFF_CODON_CHANGE=tgT/tgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_23397708_23398368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PTCHD1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000379361    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1775,132,0
X    23682877    rs477914    T    C    249.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379349    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:283,21,0
X    23682929    rs478051    G    A    214.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379349    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:248,18,0
X    23682976    rs476316    A    G    125.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379349    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
X    23685964    rs496067    T    C    327.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379331    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:361,27,0
X    23689422    rs477204    T    A    62.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379331    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:94,9,0
X    23697485    rs795493    G    A    1143.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.66;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379331    GT:AD:DP:GQ:PL    1/1:0,35:35:90.29:1176,90,0
X    23700473    rs552105    G    A    574.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=30.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379349    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:608,48,0
X    23700693    rs795489    A    G    186.23    PASS    AB=0.125;AC=1;AF=0.50;AN=2;BaseQRankSum=0.747;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.747;QD=23.28;ReadPosRankSum=0.747;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379349    GT:AD:DP:GQ:PL    0/1:1,7:8:19.58:216,0,20
X    23701662    rs2665364    G    A    604.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.64;MQ0=0;QD=37.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRDX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379349    GT:AD:DP:GQ:PL    1/1:0,16:16:48.15:637,48,0
X    23723554    rs580192    C    T    1705.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9997;MQ=59.15;MQ0=0;QD=34.81;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449612    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1739,126,0
X    23724663    rs473128    G    A    154.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=48.58;MQ0=0;QD=30.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449612    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
X    23724984    rs546321    C    A    89.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.74;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACOT9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449612    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
X    23858338    rs41305191    T    C    284.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=APOO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379220    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:317,24,0
X    23928489    rs2707164    C    T    1722.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.27;SNPEFF_AMINO_ACID_CHANGE=R24C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_23928400_23928535;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf58;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000379211    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1755,129,0
X    23934202    rs2520230    A    G    348.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=31.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379211    GT:AD:DP:GQ:PL    1/1:0,11:11:30.07:381,30,0
X    23945611    rs2707144    G    T    85.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf58;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379211    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:117,9,0
X    24007151    rs5925972    A    G    527.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328046    GT:AD:DP:GQ:PL    1/1:0,17:17:42.14:560,42,0
X    24075862    rs16997659    A    G    1026.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=K125R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_24075750_24075871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EIF2S3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253039    GT:AD:DP:GQ:PL    1/1:0,31:31:81.23:1059,81,0
X    24381387    rs1207577    G    C    3080.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8321;MQ=48.37;MQ0=0;QD=32.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GS1-184P14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413856    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3113,235,0
X    24382950    rs16982979    G    A    320.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.82;MQ0=0;QD=26.68;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GS1-184P14.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000413856    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:353,27,0
X    24517211    rs11094968    A    G    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000493226    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
X    24593453    rs3833417    GA    G    327.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=11;HaplotypeScore=73.2722;IndelType=D;MQ=59.92;MQ0=0;QD=19.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCYT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356768    GT:AD:DP:GQ:PL    1/1:1,16:17:44.93:369,45,0
X    24593513    rs3747401    T    G    205.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCYT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356768    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:238,18,0
X    24605227    rs4898285    C    T    41.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCYT1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000356768    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
X    24751958    rs75310488    T    C    481.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379059    GT:AD:DP:GQ:PL    1/1:0,15:15:39.12:514,39,0
X    24766651    rs3764770    G    A    478.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379059    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:512,39,0
X    24807111    .    C    T    167.58    PASS    AB=0.765;AC=1;AF=0.50;AN=2;BaseQRankSum=1.384;DP=51;Dels=0.0;FS=11.509;HRun=1;HaplotypeScore=1.4725;MQ=54.47;MQ0=3;MQRankSum=-3.129;QD=3.29;ReadPosRankSum=1.108;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379059    GT:AD:DP:GQ:PL    0/1:39,12:51:99:198,0,1124
X    24807159    .    C    T    208.47    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=1.038;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=51.66;MQ0=3;MQRankSum=-4.333;QD=4.09;ReadPosRankSum=0.346;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POLA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000379059    GT:AD:DP:GQ:PL    0/1:34,17:51:99:238,0,993
X    27839572    rs1368769    T    C    659.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=25.38;SNPEFF_AMINO_ACID_CHANGE=F50S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_27839375_27841131;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356790    GT:AD:DP:GQ:PL    1/1:0,26:26:57.17:693,57,0
X    27839617    rs12557898    G    A    536.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=29.82;SNPEFF_AMINO_ACID_CHANGE=R65Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_27839375_27841131;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000356790    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:570,42,0
X    29417510    rs4829347    C    A    126.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAPL1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302196    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
X    30236658    rs6526962    T    C    374.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378988    GT:AD:DP:GQ:PL    1/1:0,16:16:30.08:407,30,0
X    30236878    rs2529541    G    A    264.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.03;SNPEFF_AMINO_ACID_CHANGE=E61K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_30236693_30238206;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378988    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:297,24,0
X    30236913    rs5973792    G    A    218.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_AMINO_ACID_CHANGE=A72;SNPEFF_CODON_CHANGE=gcG/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_30236693_30238206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378988    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:251,18,0
X    30237003    rs2074793    C    T    202.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.3;SNPEFF_AMINO_ACID_CHANGE=S102;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_30236693_30238206;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378988    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:235,18,0
X    30254376    rs2071309    T    C    631.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.26;SNPEFF_AMINO_ACID_CHANGE=I112T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_30253981_30255607;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361644    GT:AD:DP:GQ:PL    1/1:0,19:19:48.16:665,48,0
X    30261002    rs2071311    A    G    1778.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=60.0;MQ0=0;QD=32.94;SNPEFF_AMINO_ACID_CHANGE=V250;SNPEFF_CODON_CHANGE=gtA/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_30260057_30262293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378982    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1812,135,0
X    30261158    rs2856733    G    C    1435.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=36.82;SNPEFF_AMINO_ACID_CHANGE=L302;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_30260057_30262293;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378982    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1469,108,0
X    30577846    rs887369    A    C    1536.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.58;MQ0=0;QD=34.92;SNPEFF_AMINO_ACID_CHANGE=V209;SNPEFF_CODON_CHANGE=gtT/gtG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_30576941_30578473;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf21;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000378962    GT:AD:DP:GQ:PL    1/1:0,42:44:99:1569,117,0
X    30872602    rs5927629    A    G    1678.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.56;MQ0=0;QD=32.29;SNPEFF_AMINO_ACID_CHANGE=W394R;SNPEFF_CODON_CHANGE=Tgg/Cgg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_30872233_30873679;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000288422    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1712,132,0
X    31089930    rs438870    C    T    828.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.92;MQ0=0;QD=31.88;SNPEFF_AMINO_ACID_CHANGE=V47;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_31089360_31090170;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FTHL17;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359202    GT:AD:DP:GQ:PL    1/1:0,26:26:66.21:862,66,0
X    31132797    rs63724261    CGG    C    165.45    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=10;FS=0.0;HRun=15;HaplotypeScore=74.8422;IndelType=D;MQ=57.66;MQ0=0;MQRankSum=-0.751;QD=16.55;ReadPosRankSum=0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343523    GT:AD:DP:GQ:PL    1/1:1,9:10:23.06:207,23,0
X    31200832    rs3833412    A    ATT    1324.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.0;HRun=10;HaplotypeScore=148.7481;IndelType=I;MQ=54.11;MQ0=0;QD=38.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343523    GT:AD:DP:GQ:PL    1/1:1,31:33:95.98:1367,96,0
X    31224684    rs2293668    A    G    331.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.64;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469142    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:365,27,0
X    31496350    rs1800280    C    T    645.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.95;SNPEFF_AMINO_ACID_CHANGE=R1593Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_31496223_31496491;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000378684    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:678,51,0
X    31514752    rs6418632    G    A    123.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.84;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343523    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
X    31676096    rs2270672    G    A    723.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343523    GT:AD:DP:GQ:PL    1/1:0,22:22:54.18:757,54,0
X    31837916    rs17341004    A    G    52.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343523    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
X    31895503    rs1531269    A    G    624.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=28.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343523    GT:AD:DP:GQ:PL    1/1:0,22:22:54.14:658,54,0
X    31895671    rs5927894    T    C    367.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=33.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343523    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:401,33,0
X    32363964    rs10626188    A    AAG    295.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=12.7043;IndelType=I;MQ=60.0;MQ0=0;QD=49.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357033    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:337,18,0
X    32366354    rs331309    T    A    116.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357033    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
X    32380996    rs1801187    C    T    1064.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=R1622H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_32380905_32381075;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535280    GT:AD:DP:GQ:PL    1/1:0,33:33:81.24:1098,81,0
X    32383034    rs5927975    C    T    214.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357033    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
X    32383469    rs5927976    C    T    92.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357033    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
X    32459169    rs41303185    G    A    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357033    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
X    32472763    rs5902031    C    CT    410.76    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.906;DB;DP=32;FS=2.682;HRun=13;HaplotypeScore=117.8014;IndelType=I;MQ=58.42;MQ0=0;MQRankSum=1.338;QD=12.84;ReadPosRankSum=-1.257;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357033    GT:AD:DP:GQ:PL    1/1:9,22:32:0.35:448,0,0
X    32481863    rs170608    T    C    40.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357033    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
X    32503194    rs228406    T    C    1225.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.43;SNPEFF_AMINO_ACID_CHANGE=D759G;SNPEFF_CODON_CHANGE=gAt/gGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_32503036_32503216;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535280    GT:AD:DP:GQ:PL    1/1:0,39:39:90.30:1259,90,0
X    32717085    .    C    CTG    302.94    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=12.6823;IndelType=I;MQ=61.78;MQ0=0;QD=50.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288447    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:345,18,0
X    34148877    rs5973088    C    G    209.86    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.135;DB;DP=28;Dels=0.0;FS=1.657;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.694;QD=7.49;ReadPosRankSum=-1.62;SNPEFF_AMINO_ACID_CHANGE=E507Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_34147869_34150447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346193    GT:AD:DP:GQ:PL    0/1:18,10:28:99:240,0,642
X    34148882    rs5973089    C    T    86.04    PASS    AB=0.7;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.029;DB;DP=30;Dels=0.0;FS=2.114;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.437;QD=2.87;ReadPosRankSum=-2.129;SNPEFF_AMINO_ACID_CHANGE=R505H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_34147869_34150447;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000346193    GT:AD:DP:GQ:PL    0/1:21,9:30:99:116,0,633
X    34150506    rs2939997    C    T    42.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.96;MQ0=0;QD=14.28;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346193    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:74,6,0
X    35820265    rs5928990    C    T    489.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.99;SNPEFF_AMINO_ACID_CHANGE=C16;SNPEFF_CODON_CHANGE=tgC/tgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_35820248_35821852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB16;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000399992    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:523,39,0
X    35820425    rs1410961    C    T    501.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.48;SNPEFF_AMINO_ACID_CHANGE=L38F;SNPEFF_CODON_CHANGE=Ctc/Ttc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_35820248_35821852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399985    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:534,42,0
X    35820696    rs1410962    G    A    950.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=59.17;MQ0=0;QD=33.93;SNPEFF_AMINO_ACID_CHANGE=C128Y;SNPEFF_CODON_CHANGE=tGt/tAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_35820248_35821852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399985    GT:AD:DP:GQ:PL    1/1:0,28:28:75.24:983,75,0
X    35820795    rs5973488    A    G    829.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=H161R;SNPEFF_CODON_CHANGE=cAc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_35820248_35821852;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB16;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000399985    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:862,66,0
X    35821127    rs4829392    C    T    747.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.98;SNPEFF_AMINO_ACID_CHANGE=R272*;SNPEFF_CODON_CHANGE=Cga/Tga;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_X_35820248_35821852;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB16;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000399985    GT:AD:DP:GQ:PL    1/1:0,22:22:57.19:781,57,0
X    35821302    rs4829393    C    G    213.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=26.68;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399985    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:246,18,0
X    35821308    rs4829394    C    T    196.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=24.55;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEB16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399985    GT:AD:DP:GQ:PL    1/1:1,7:8:18.06:229,18,0
X    37027035    rs61730915    G    A    607.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.71;SNPEFF_AMINO_ACID_CHANGE=G184;SNPEFF_CODON_CHANGE=ggG/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_37026432_37029739;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM47C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000358047    GT:AD:DP:GQ:PL    1/1:0,17:17:48.16:640,48,0
X    38037479    rs5918489    A    T    73.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=18.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-972B16.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465127    GT:AD:DP:GQ:PL    1/1:0,4:4:9:106,9,0
X    38080703    rs7877137    G    T    448.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-972B16.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465127    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:481,36,0
X    38132628    rs4084271    A    G    281.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=28.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-972B16.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465127    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:314,27,0
X    38158193    rs5918522    T    C    795.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.4;DB;DP=26;Dels=0.0;FS=5.699;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.4;QD=30.58;ReadPosRankSum=0.267;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-972B16.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465127    GT:AD:DP:GQ:PL    1/1:1,25:26:25.57:828,26,0
X    38169777    rs113851538    T    TA    425.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=7;HaplotypeScore=26.8615;IndelType=I;MQ=60.77;MQ0=0;QD=30.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP5-972B16.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465127    GT:AD:DP:GQ:PL    1/1:1,13:14:39.12:467,39,0
X    38226603    rs1800321    A    G    1366.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.48;SNPEFF_AMINO_ACID_CHANGE=K46R;SNPEFF_CODON_CHANGE=aAa/aGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_38226544_38226682;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000039007    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1400,108,0
X    38240555    rs148081863    G    GT    365.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=6;HaplotypeScore=51.5713;IndelType=I;MQ=61.94;MQ0=0;QD=33.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000039007    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:407,33,0
X    38240587    rs73196229    T    A    459.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.51;MQ0=0;QD=21.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000039007    GT:AD:DP:GQ:PL    1/1:0,21:21:42.10:492,42,0
X    38268220    rs1800328    A    G    1299.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=32.49;SNPEFF_AMINO_ACID_CHANGE=Q270R;SNPEFF_CODON_CHANGE=cAa/cGa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_38268129_38268278;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OTC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000039007    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1333,102,0
X    39646676    rs139594770    C    T    308.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=GAPDHP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000452570    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:342,24,0
X    39913655    rs112054628    C    T    174.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCOR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342274    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
X    39933339    rs5917933    A    G    529.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=58.63;MQ0=0;QD=31.17;SNPEFF_AMINO_ACID_CHANGE=D420;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_39931602_39934433;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BCOR;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000342274    GT:AD:DP:GQ:PL    1/1:0,17:17:48.09:563,48,0
X    40456961    rs3112299    G    C    688.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6AP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479120    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:722,54,0
X    40457085    rs5918007    T    C    72.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6AP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479120    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:105,9,0
X    40460183    rs67049897    T    TA    194.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.0;HRun=13;HaplotypeScore=52.5312;IndelType=I;MQ=58.24;MQ0=0;QD=11.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6AP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436783    GT:AD:DP:GQ:PL    1/1:9,8:17:26.87:237,27,0
X    40551599    rs34023351    TA    T    95.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=16;HaplotypeScore=71.1491;IndelType=D;MQ=55.66;MQ0=0;QD=8.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324817    GT:AD:DP:GQ:PL    1/1:1,8:11:24.57:137,25,0
X    40552243    rs7052408    T    C    42    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324817    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
X    40556492    rs5918029    C    G    643.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=37.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324817    GT:AD:DP:GQ:PL    1/1:0,17:17:51.17:677,51,0
X    40571413    rs4827226    T    C    1128.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED14;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482034    GT:AD:DP:GQ:PL    1/1:0,34:34:84.28:1162,84,0
X    40573157    rs6520683    G    A    976.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=28.73;SNPEFF_AMINO_ACID_CHANGE=D175;SNPEFF_CODON_CHANGE=gaC/gaT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_40573030_40573159;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED14;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000324817    GT:AD:DP:GQ:PL    1/1:0,34:34:75.21:1010,75,0
X    41076429    .    T    A    870.01    PASS    AC=2;AF=1.00;AN=2;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.8;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP9X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324545    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:903,66,0
X    41198456    rs2275943    T    C    178.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX3X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480592    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:211,18,0
X    41202273    rs6610546    A    G    70.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX3X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480592    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:103,9,0
X    41203119    rs2275944    G    A    321.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX3X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399959    GT:AD:DP:GQ:PL    1/1:0,10:10:27.08:355,27,0
X    41383297    .    G    GA    93.92    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=7;FS=0.0;HRun=14;HaplotypeScore=37.3339;IndelType=I;MQ=58.24;MQ0=0;MQRankSum=0.742;QD=13.42;ReadPosRankSum=0.742;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CASK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318588    GT:AD:DP:GQ:PL    1/1:0,5:7:16.82:136,17,0
X    43591036    rs6323    G    T    847.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.88;SNPEFF_AMINO_ACID_CHANGE=R164;SNPEFF_CODON_CHANGE=cgG/cgT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_43590941_43591100;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAOA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542639    GT:AD:DP:GQ:PL    1/1:0,24:25:66.21:880,66,0
X    43595428    rs2235186    A    G    212.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000497485    GT:AD:DP:GQ:PL    1/1:0,9:9:18.06:245,18,0
X    43601142    rs979606    C    T    349.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338702    GT:AD:DP:GQ:PL    1/1:0,11:11:30.08:382,30,0
X    43601363    rs979605    A    G    170.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAOA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338702    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:203,15,0
X    43603391    rs1137070    T    C    641.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_AMINO_ACID_CHANGE=D337;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_43603356_43603418;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAOA;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000542639    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:675,48,0
X    43626845    rs140262266    G    A    422.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.45;MQ0=0;QD=28.17;SNPEFF_AMINO_ACID_CHANGE=I461;SNPEFF_CODON_CHANGE=atC/atT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_43626506_43626865;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAOB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536181    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:455,33,0
X    43627999    rs1799836    T    C    497.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000378069    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:530,45,0
X    43741616    rs1181251    G    C    145.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=18.17;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAOB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487544    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:178,15,0
X    44493009    rs4824511    T    C    179.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CHTF8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414660    GT:AD:DP:GQ:PL    1/1:0,8:8:18.05:212,18,0
X    44494094    rs12559048    A    C    345.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.41;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CHTF8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414660    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:379,30,0
X    44494153    rs5905398    C    T    581.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.74;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CHTF8P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414660    GT:AD:DP:GQ:PL    1/1:0,15:15:45.15:614,45,0
X    44935924    rs11309294    CT    C    640.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.0;HRun=13;HaplotypeScore=139.7661;IndelType=D;MQ=56.98;MQ0=0;QD=16.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM6A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334516    GT:AD:DP:GQ:PL    1/1:4,32:38:96.36:683,96,0
X    45011340    rs4824527    T    C    185.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.92;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398000    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:218,18,0
X    45023637    rs5952697    T    A    134.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000377934    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
X    46387921    rs56160764    G    A    2171.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=32.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF674;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414387    GT:AD:DP:GQ:PL    1/1:0,66:66:99:2205,163,0
X    46388442    rs2003665    G    A    482.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=55.54;MQ0=0;QD=37.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF674;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414387    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:515,39,0
X    46388458    rs5906232    T    G    327.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=32.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF674;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414387    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:360,27,0
X    46466775    rs1883255    G    A    129.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328306    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:162,12,0
X    46472666    rs6611276    C    T    174.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328306    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
X    46472826    rs3208940    G    A    258.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.86;SNPEFF_AMINO_ACID_CHANGE=Y608;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_46472724_46472829;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328306    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:292,21,0
X    46532245    .    C    A    171.11    PASS    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328306    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:204,15,0
X    46618321    rs1056846    C    G    470.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=27.65;SNPEFF_AMINO_ACID_CHANGE=A48;SNPEFF_CODON_CHANGE=gcG/gcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_46618140_46618490;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A7;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328306    GT:AD:DP:GQ:PL    1/1:0,17:17:42.09:503,42,0
X    46951004    rs5906327    G    T    662.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.78;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336169    GT:AD:DP:GQ:PL    1/1:0,19:19:51.17:696,51,0
X    46952219    rs4480242    A    G    134.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336169    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:167,12,0
X    47057647    rs4468050    A    G    780.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=I16V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_47056598_47057754;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000451702    GT:AD:DP:GQ:PL    1/1:0,23:23:63.18:813,63,0
X    47061018    rs4239964    C    G    374.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000412206    GT:AD:DP:GQ:PL    1/1:0,12:12:30.10:407,30,0
X    47086347    rs6417923    G    A    290.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CDK16;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000517479    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:324,24,0
X    47372250    rs5906414    C    T    1016.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=41.48;MQ0=1;QD=28.23;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=NUS1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446295    GT:AD:DP:GQ:PL    1/1:0,36:36:84.24:1049,84,0
X    47755110    rs11796175    C    T    88.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338637    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
X    47755164    rs3949810    C    A    303.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338637    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:336,27,0
X    47757758    rs5906510    T    G    412.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF81;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338637    GT:AD:DP:GQ:PL    1/1:0,13:13:36.10:445,36,0
X    47920356    rs727079    A    G    1590.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ZNF630;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276054    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1623,120,0
X    47970842    rs543755    A    T    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319275    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    47972356    rs11402335    A    AC    286.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=4;HaplotypeScore=15.3033;IndelType=I;MQ=57.05;MQ0=0;QD=35.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000319275    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:329,24,0
X    48049666    rs5906557    C    T    3151.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=2.3919;MQ=59.5;MQ0=0;QD=34.26;SNPEFF_AMINO_ACID_CHANGE=S123;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_48049569_48049704;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000347757    GT:AD:DP:GQ:PL    1/1:1,90:92:99:3185,238,0
X    48053428    rs4824674    C    A    206.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=61.3;MQ0=0;QD=34.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311798    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
X    48053521    rs4239967    T    C    1133.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.37;MQ0=0;QD=36.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000311798    GT:AD:DP:GQ:PL    1/1:0,30:31:87.24:1167,87,0
X    48054740    rs4824675    C    G    3399.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9469;MQ=60.0;MQ0=0;QD=34.69;SNPEFF_AMINO_ACID_CHANGE=E19Q;SNPEFF_CODON_CHANGE=Gag/Cag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_48054726_48054814;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000311798    GT:AD:DP:GQ:PL    1/1:0,98:98:99:3400,247,0
X    48072303    rs5905660    C    T    3131.95    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DB;DP=91;Dels=0.0;FS=6.58;HRun=0;HaplotypeScore=0.0;MQ=59.97;MQ0=0;MQRankSum=-1.58;QD=34.42;ReadPosRankSum=-1.39;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-552E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433276    GT:AD:DP:GQ:PL    1/1:1,90:91:99:3165,198,0
X    48072310    rs5905661    C    T    3061.72    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.526;DB;DP=84;Dels=0.0;FS=7.482;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-0.247;QD=36.45;ReadPosRankSum=-0.866;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-552E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433276    GT:AD:DP:GQ:PL    1/1:1,83:84:99:3095,193,0
X    48072427    rs5906576    G    A    426.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=0.248;QD=30.48;ReadPosRankSum=0.248;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-552E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433276    GT:AD:DP:GQ:PL    1/1:1,13:14:0.37:455,0,0
X    48073924    rs4593689    T    C    3228.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.82;MQ0=0;QD=35.48;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-552E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433276    GT:AD:DP:GQ:PL    1/1:0,90:91:99:3261,244,0
X    48076813    rs4262423    T    C    251.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.49;MQ0=5;QD=16.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-552E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446048    GT:AD:DP:GQ:PL    1/1:0,15:15:21.06:284,21,0
X    48076876    rs112341057    T    C    373.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.73;MQ0=9;QD=14.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-552E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446048    GT:AD:DP:GQ:PL    1/1:0,25:26:41.98:407,42,0
X    48076947    rs4521885    A    G    113.92    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=18.7;MQ0=3;QD=11.39;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-552E4.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446048    GT:AD:DP:GQ:PL    1/1:0,10:10:15:147,15,0
X    48136890    rs5953212    G    A    1962.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5317;MQ=59.22;MQ0=0;QD=36.35;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-344N17.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456455    GT:AD:DP:GQ:PL    1/1:0,54:54:99:1996,150,0
X    48137024    rs183005089    G    C    2899.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6358;MQ=59.74;MQ0=0;QD=32.95;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-344N17.11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000445444    GT:AD:DP:GQ:PL    1/1:0,88:88:99:2932,223,0
X    48155661    rs6609697    C    T    212.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.39;MQ0=0;QD=35.46;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407081    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:246,18,0
X    48161281    rs4571855    C    G    1620.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9983;MQ=59.53;MQ0=0;QD=33.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376909    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1654,123,0
X    48164138    rs5906631    A    G    1621.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.09;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSX9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376909    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1655,123,0
X    48418126    rs2293948    A    G    333.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.32;SNPEFF_AMINO_ACID_CHANGE=N23S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_48418002_48419483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537536    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:366,27,0
X    48418659    rs235836    G    A    295.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.57;SNPEFF_AMINO_ACID_CHANGE=A201T;SNPEFF_CODON_CHANGE=Gct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_48418002_48419483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBC1D25;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000537536    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:329,24,0
X    48432791    rs2661105    T    C    88.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000354480    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
X    48433858    rs6651673    C    T    126.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376755    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:159,12,0
X    48433905    rs41305379    G    A    339.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=52.65;MQ0=0;QD=33.91;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376755    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:372,30,0
X    48456962    rs73487689    C    T    89.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000472440    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
X    48460314    rs235842    A    G    543.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_AMINO_ACID_CHANGE=H325R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_48460172_48460352;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=WDR13;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218056    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:577,45,0
X    48649449    rs62600348    T    G    69.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=17.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376665    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:102,9,0
X    48649456    rs66717003    T    G    71.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=62.65;MQ0=0;QD=17.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GATA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376665    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:104,9,0
X    48823056    rs3027482    G    C    1237.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9581;MQ=59.38;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=L466V;SNPEFF_CODON_CHANGE=Ctt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_48822985_48823083;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KCND1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218176    GT:AD:DP:GQ:PL    1/1:0,37:37:96.28:1270,96,0
X    48847497    rs11545861    T    C    500.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.4;SNPEFF_AMINO_ACID_CHANGE=E108;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_48847338_48847514;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIPAP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376423    GT:AD:DP:GQ:PL    1/1:0,14:15:42.13:534,42,0
X    48898183    rs7056903    C    G    80.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000315869    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
X    49021256    rs5906744    A    G    2998.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9332;MQ=59.79;MQ0=0;QD=34.08;SNPEFF_AMINO_ACID_CHANGE=H112R;SNPEFF_CODON_CHANGE=cAt/cGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49021201_49021428;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGIX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000412696    GT:AD:DP:GQ:PL    1/1:0,88:88:99:3032,238,0
X    49021537    rs5905720    G    C    327.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.42;SNPEFF_AMINO_ACID_CHANGE=V114L;SNPEFF_CODON_CHANGE=Gtc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49021528_49021699;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGIX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000376338    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:361,27,0
X    49022276    rs5953269    C    G    99.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.1;MQ0=0;QD=19.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGIX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376338    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:132,12,0
X    49022286    rs72619037    C    G    110.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.866;MQ=44.1;MQ0=0;QD=22.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGIX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376338    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:143,12,0
X    49022700    rs4824462    T    C    108.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=18.01;SNPEFF_AMINO_ACID_CHANGE=F247L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49022413_49022971;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGIX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000425661    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:141,12,0
X    49032208    rs12557970    G    A    1171.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.49;SNPEFF_AMINO_ACID_CHANGE=S378;SNPEFF_CODON_CHANGE=tcC/tcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49032022_49032342;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRICKLE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000538114    GT:AD:DP:GQ:PL    1/1:0,33:33:87.29:1204,87,0
X    49069366    rs2071316    C    T    174.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323022    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
X    49070813    rs2071317    G    A    167.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323022    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
X    49071964    rs2075866    A    G    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.65;SNPEFF_AMINO_ACID_CHANGE=H1038;SNPEFF_CODON_CHANGE=caT/caC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49071802_49072003;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376251    GT:AD:DP:GQ:PL    1/1:0,2:3:6.02:75,6,0
X    49077583    rs2869212    G    A    270.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480889    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:304,24,0
X    49081291    rs2235127    G    A    364.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_AMINO_ACID_CHANGE=G549;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49081223_49081448;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376251    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
X    49084492    rs6609854    C    T    413.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CACNA1F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000323022    GT:AD:DP:GQ:PL    1/1:0,14:14:33.11:446,33,0
X    49093528    rs2294016    T    C    263.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376227    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:297,21,0
X    49098631    rs2294018    A    G    116.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376227    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:149,12,0
X    49103097    rs2294019    T    A    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.92;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000490300    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    49103224    rs2294020    G    A    160.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.73;SNPEFF_AMINO_ACID_CHANGE=Q249;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49103192_49103386;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC22;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000376227    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:193,15,0
X    49126656    rs111505885    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.47;SNPEFF_AMINO_ACID_CHANGE=P108;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49126317_49127336;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PPP1R3F;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000055335    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
X    49173691    .    G    T    4061.83    PASS    AC=2;AF=1.00;AN=2;DP=123;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.81;MQ0=0;QD=33.02;SNPEFF_AMINO_ACID_CHANGE=G84;SNPEFF_CODON_CHANGE=ggG/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_49173642_49173767;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAGE10;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000407599    GT:AD:DP:GQ:PL    1/1:0,123:123:99:4062,319,0
X    49208469    rs187856088    T    G    64.85    MQFilter40    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=22.16;MQ0=5;MQRankSum=0.727;QD=7.21;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAGE2E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402590    GT:AD:DP:GQ:PL    0/1:6,3:9:27.28:95,0,27
X    49208480    rs143433513    T    C    34.43    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=33.24;MQ0=0;MQRankSum=-0.727;QD=8.61;ReadPosRankSum=-0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAGE2E;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402590    GT:AD:DP:GQ:PL    0/1:1,3:4:26.23:64,0,26
X    49355629    .    G    T    281.84    MQFilter40    AB=0.73;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.719;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=28.18;MQ0=1;MQRankSum=-0.52;QD=3.17;ReadPosRankSum=-0.314;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GAGE12H;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000381722    GT:AD:DP:GQ:PL    0/1:65,24:89:99:312,0,1135
X    49767832    rs456615    A    G    612.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376088    GT:AD:DP:GQ:PL    1/1:0,23:23:51.16:646,51,0
X    49767835    rs456617    A    G    609.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376088    GT:AD:DP:GQ:PL    1/1:0,22:22:51.16:642,51,0
X    49767904    rs149259    A    G    245.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.13;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CLCN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376088    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:279,21,0
X    50056814    rs5915179    A    G    393.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.79;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CCNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276014    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:427,33,0
X    50121146    rs35830302    A    AG    2870.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.0;HRun=1;HaplotypeScore=158.4456;IndelType=I;MQ=60.62;MQ0=0;QD=42.85;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=lincRNA;SNPEFF_GENE_NAME=DGKK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000376025    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2913,196,0
X    50341675    rs2295543    G    C    41.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SHROOM4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289292    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
X    51644748    rs3199687    C    A    414.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.86;SNPEFF_AMINO_ACID_CHANGE=R687;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_51644649_51645034;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGED1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000326587    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:447,33,0
X    52659379    rs141771654    C    G    3035.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.339;DB;DP=100;Dels=0.0;FS=2.797;HRun=0;HaplotypeScore=2.531;MQ=56.84;MQ0=0;MQRankSum=0.063;QD=30.36;ReadPosRankSum=1.294;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=SSX8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414360    GT:AD:DP:GQ:PL    1/1:2,98:100:99:3069,187,0
X    52706249    .    C    CTCTT    772.63    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;DP=31;FS=0.0;HRun=0;HaplotypeScore=112.7992;IndelType=I;MQ=33.99;MQ0=5;MQRankSum=1.302;QD=21.46;ReadPosRankSum=0.217;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-552J9.10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000443473    GT:AD:DP:GQ:PL    1/1:22,14:31:15.57:814,16,0
X    52818567    rs2998175    T    A    53.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.61;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-77O11.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434905    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
X    52818709    rs2806827    C    A    620.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=28.2;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-77O11.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434905    GT:AD:DP:GQ:PL    1/1:0,20:22:48.16:653,48,0
X    52818754    rs2806828    A    T    800.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.02;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP13-77O11.8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000434905    GT:AD:DP:GQ:PL    1/1:0,25:25:60.20:834,60,0
X    52825471    rs2806837    A    G    1764.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.49;MQ0=0;QD=35.29;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375511    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1797,141,0
X    52825546    rs2806838    C    G    1564.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.8;MQ0=0;QD=34.77;SNPEFF_AMINO_ACID_CHANGE=L67;SNPEFF_CODON_CHANGE=ctG/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_52825184_52825671;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375511    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1598,123,0
X    52826118    rs6643562    G    A    260.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375511    GT:AD:DP:GQ:PL    1/1:0,8:8:24.05:293,24,0
X    52843241    .    G    A    685.03    PASS    AC=2;AF=1.00;AN=2;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_AMINO_ACID_CHANGE=T69;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_52843213_52843368;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000375503    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:718,51,0
X    52891565    rs79831867    A    G    45    PASS    AB=0.571;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.065;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=52.65;MQ0=0;MQRankSum=-1.872;QD=3.21;ReadPosRankSum=-0.581;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    0/1:8,6:14:74.99:75,0,292
X    52891584    rs5943751    C    A    117.26    PASS    AB=0.588;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.708;DB;DP=17;Dels=0.0;FS=3.01;HRun=0;HaplotypeScore=0.0;MQ=54.02;MQ0=0;MQRankSum=-0.927;QD=6.9;ReadPosRankSum=-1.61;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    0/1:10,7:17:99:147,0,338
X    52891619    rs140106737    GT    G    275.90    PASS    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=4.318;DB;DP=27;FS=2.049;HRun=4;HaplotypeScore=165.7665;IndelType=D;MQ=54.88;MQ0=0;MQRankSum=-0.913;QD=10.22;ReadPosRankSum=-0.074;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    0/1:16,11:27:99:315,0,591
X    52891645    rs75808475    A    G    338.94    PASS    AB=0.517;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.379;DB;DP=29;Dels=0.0;FS=1.637;HRun=0;HaplotypeScore=0.0;MQ=52.42;MQ0=0;MQRankSum=-2.291;QD=11.69;ReadPosRankSum=-0.327;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    0/1:15,14:29:99:369,0,536
X    52891653    rs73206488    C    T    384.05    PASS    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=0.196;DB;DP=29;Dels=0.0;FS=1.69;HRun=1;HaplotypeScore=0.0;MQ=52.42;MQ0=0;MQRankSum=-1.375;QD=13.24;ReadPosRankSum=-0.807;SNPEFF_AMINO_ACID_CHANGE=Q110;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_52891557_52891669;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    0/1:14,15:29:99:414,0,485
X    52891732    .    G    A    194.97    PASS    AB=0.421;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.453;DP=19;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=53.61;MQ0=0;MQRankSum=-0.996;QD=10.26;ReadPosRankSum=-1.811;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    0/1:8,11:19:99:225,0,245
X    52891818    rs73488230    G    A    122.68    PASS    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.668;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=49.96;MQ0=0;MQRankSum=-1.098;QD=12.27;ReadPosRankSum=0.103;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    0/1:5,5:10:99:153,0,172
X    52891832    rs66491662    CT    C    119.96    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=9;FS=0.0;HRun=3;HaplotypeScore=75.3878;IndelType=D;MQ=48.72;MQ0=0;MQRankSum=-1.881;QD=13.33;ReadPosRankSum=0.361;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    0/1:4,5:9:99:159,0,146
X    52895579    rs67971638    GGT    G    406.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.0;HRun=0;HaplotypeScore=96.2079;IndelType=D;MQ=60.0;MQ0=0;QD=17.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000346279    GT:AD:DP:GQ:PL    1/1:10,13:23:39.11:449,39,0
X    53225751    rs1536247    A    G    97.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465402    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:130,12,0
X    53228148    rs1977364    C    A    515.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=32.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000465402    GT:AD:DP:GQ:PL    1/1:0,16:16:42.13:548,42,0
X    53244198    .    C    T    125.96    PASS    AC=2;AF=1.00;AN=2;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.49;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428012    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
X    53246959    rs41308052    C    T    520.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.89;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KDM5C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000349663    GT:AD:DP:GQ:PL    1/1:0,18:18:42.14:553,42,0
X    53271147    rs2274307    T    G    175.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375365    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:209,15,0
X    53280421    rs7886988    G    A    297.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IQSEC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375365    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
X    53436232    rs1264008    G    T    337.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340213    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:371,27,0
X    53449336    rs72314466    A    AG    334.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.0;HRun=2;HaplotypeScore=16.651;IndelType=I;MQ=61.19;MQ0=0;QD=37.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SMC1A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000322213    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:377,27,0
X    53563589    rs426298    A    G    643.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_AMINO_ACID_CHANGE=G4059;SNPEFF_CODON_CHANGE=ggT/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_53563341_53563628;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUWE1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000262854    GT:AD:DP:GQ:PL    1/1:0,19:19:54.16:676,54,0
X    53607754    rs266786    A    C    526.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUWE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218328    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:559,42,0
X    53622078    rs1244413    T    A    176    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUWE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218328    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:209,15,0
X    53652852    rs142974857    T    TGCCGGG    1400.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=0;HaplotypeScore=81.8187;IndelType=I;MQ=62.48;MQ0=0;QD=66.69;SNPEFF_AMINO_ACID_CHANGE=G168GPA;SNPEFF_CODON_CHANGE=ggc/ggCCCGGCc;SNPEFF_EFFECT=CODON_INSERTION;SNPEFF_EXON_ID=exon_X_53652747_53652989;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HUWE1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000396323    GT:AD:DP:GQ:PL    1/1:1,17:21:60.19:1443,60,0
X    54107692    rs2516098    T    C    844.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328235    GT:AD:DP:GQ:PL    1/1:0,31:31:75.22:878,75,0
X    54117740    rs2495797    C    A    1301.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328235    GT:AD:DP:GQ:PL    1/1:0,38:38:99:1335,99,0
X    54209387    rs2495783    A    G    107.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.89;SNPEFF_AMINO_ACID_CHANGE=I82T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_54208933_54209688;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM120C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000328235    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:140,12,0
X    54470642    rs140639150    G    A    657.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.33;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000375135    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:691,54,0
X    54951464    rs45448595    C    T    930.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.01;SNPEFF_AMINO_ACID_CHANGE=P14L;SNPEFF_CODON_CHANGE=cCa/cTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_54951422_54951501;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRO;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000420798    GT:AD:DP:GQ:PL    1/1:0,31:31:69.23:963,69,0
X    54952989    rs144879859    CCT    C    1426.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.0;HRun=0;HaplotypeScore=113.1678;IndelType=D;MQ=58.02;MQ0=0;QD=44.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411534    GT:AD:DP:GQ:PL    1/1:1,31:31:90.31:1468,90,0
X    54953647    rs2273138    G    A    239.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.28;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRO;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411534    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:273,21,0
X    55040097    rs45468097    A    C    271.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=16.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ALAS2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463868    GT:AD:DP:GQ:PL    1/1:0,16:16:24.06:304,24,0
X    55116466    rs1845444    C    G    917.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.36;MQ0=0;QD=31.62;SNPEFF_AMINO_ACID_CHANGE=L5V;SNPEFF_CODON_CHANGE=Cta/Gta;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_55116446_55116537;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAGE2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374965    GT:AD:DP:GQ:PL    1/1:0,29:29:69.21:950,69,0
X    55249049    rs2148982    T    C    1565.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9832;MQ=60.0;MQ0=0;QD=36.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAGE5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000289619    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1599,120,0
X    55289593    rs2148981    C    T    121.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAGE3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374951    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:154,12,0
X    55289774    rs4826381    T    C    292.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.36;SNPEFF_AMINO_ACID_CHANGE=N35D;SNPEFF_CODON_CHANGE=Aat/Gat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_55289684_55289792;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAGE3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000374951    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:325,24,0
X    55514818    rs3126255    C    T    471.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.919;DB;DP=18;Dels=0.0;FS=3.854;HRun=1;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;MQRankSum=1.123;QD=26.2;ReadPosRankSum=-0.919;SNPEFF_AMINO_ACID_CHANGE=E185;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_55511049_55515421;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP51;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000500968    GT:AD:DP:GQ:PL    1/1:1,17:18:2.49:501,2,0
X    55651001    rs2375465    T    C    836.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.16;SNPEFF_AMINO_ACID_CHANGE=V286A;SNPEFF_CODON_CHANGE=gTc/gCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_55649833_55652621;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXR2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000339140    GT:AD:DP:GQ:PL    1/1:0,26:26:63.21:869,63,0
X    55748820    rs1473761    A    G    78.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262850    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:111,9,0
X    55757744    rs5960480    T    G    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RRAGB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262850    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
X    56292362    rs5960155    C    T    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KLF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374928    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
X    56295245    rs3747284    T    C    330.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=36.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KLF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374928    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:364,27,0
X    56295438    rs111831266    AAC    A    534.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.0;HRun=0;HaplotypeScore=85.0128;IndelType=D;MQ=59.38;MQ0=0;QD=24.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KLF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374928    GT:AD:DP:GQ:PL    1/1:5,16:22:50.98:577,51,0
X    56296488    rs12862304    G    C    387.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=KLF8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476898    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:421,33,0
X    57146035    rs707345    T    C    46.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SPIN2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000275988    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
X    57405163    rs4826543    T    C    731.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.23;SNPEFF_AMINO_ACID_CHANGE=R274;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_57405084_57405219;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAAH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374900    GT:AD:DP:GQ:PL    1/1:0,22:22:57.18:764,57,0
X    57474943    rs1821118    A    T    250.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374900    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
X    57475132    rs1367830    T    C    1184.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.02;SNPEFF_AMINO_ACID_CHANGE=P468;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_57474957_57475151;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAAH2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374900    GT:AD:DP:GQ:PL    1/1:0,37:37:99:1218,102,0
X    57515439    rs1048358    T    C    364.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=36.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAAH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491179    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:397,30,0
X    57619648    rs1057328    G    T    922.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=44.03;MQ0=1;QD=28.83;SNPEFF_AMINO_ACID_CHANGE=P389;SNPEFF_CODON_CHANGE=ccG/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_57618269_57623906;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZXDB;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374888    GT:AD:DP:GQ:PL    1/1:0,32:32:75.22:956,75,0
X    62974288    .    A    AT    104.23    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=12;HaplotypeScore=17.797;IndelType=I;MQ=63.02;MQ0=0;QD=14.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGEF9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374878    GT:AD:DP:GQ:PL    1/1:2,5:7:15.02:146,15,0
X    65393658    rs5918591    A    G    128.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429547    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:161,12,0
X    65420609    rs1264215    A    G    220.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336279    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:254,18,0
X    65474774    rs651494    C    T    161.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HEPH;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336279    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:194,15,0
X    65822607    rs1385698    T    C    178.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.47;SNPEFF_AMINO_ACID_CHANGE=T129A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_65822475_65822639;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDA2R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253392    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:211,15,0
X    65824986    rs1385699    C    T    88.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.52;SNPEFF_AMINO_ACID_CHANGE=R57K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_65824890_65825068;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDA2R;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000253392    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
X    66941597    rs1337076    T    G    799.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AR;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374690    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:832,63,0
X    67412906    rs1191948    G    A    252.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPHN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000355520    GT:AD:DP:GQ:PL    1/1:0,9:9:21.07:285,21,0
X    67652513    rs5919563    A    G    39.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.62;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPHN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000491714    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:70,6,0
X    67936140    .    T    G    71.98    MQFilter40    AC=2;AF=1.00;AN=2;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=36.07;MQ0=0;QD=12.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STARD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252336    GT:AD:DP:GQ:PL    1/1:0,6:6:11.98:104,12,0
X    67941124    rs4844108    C    G    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=STARD8;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252336    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
X    68394313    rs4844331    C    T    381.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.91;MQ0=0;QD=23.82;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HMGN1P35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303758    GT:AD:DP:GQ:PL    1/1:0,16:16:33.08:414,33,0
X    68394514    rs5937166    G    A    531.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=33.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HMGN1P35;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000303758    GT:AD:DP:GQ:PL    1/1:0,16:16:45.12:565,45,0
X    68749379    rs35383499    G    A    376.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=37.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM155B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000252338    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:409,30,0
X    69157785    rs4844203    T    C    704.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374552    GT:AD:DP:GQ:PL    1/1:0,22:22:60.17:737,60,0
X    69250308    rs2296765    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=EDA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374552    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
X    69459945    rs74490344    C    T    304.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AWAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480702    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:338,27,0
X    69495817    rs5936871    G    A    294.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.78;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307959    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:327,24,0
X    69496228    rs1572732    T    C    386.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307959    GT:AD:DP:GQ:PL    1/1:0,13:13:33.08:420,33,0
X    69498696    rs1768567    C    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480877    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    69500852    rs67671267    T    TG    59.30    PASS    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=0.731;DB;DP=10;FS=0.0;HRun=11;HaplotypeScore=87.4601;IndelType=I;MQ=49.86;MQ0=0;MQRankSum=-0.731;QD=5.93;ReadPosRankSum=-0.731;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000480877    GT:AD:DP:GQ:PL    0/1:4,6:10:8.23:98,0,8
X    69502054    rs5936549    A    G    315.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307959    GT:AD:DP:GQ:PL    1/1:0,10:10:27.07:349,27,0
X    69502479    rs1626469    A    G    750.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.26;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307959    GT:AD:DP:GQ:PL    1/1:0,24:24:60.18:783,60,0
X    69504073    rs2275412    T    C    370.52    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;DB;DP=21;Dels=0.0;FS=3.01;HRun=4;HaplotypeScore=1.9966;MQ=57.77;MQ0=0;MQRankSum=0.06;QD=17.64;ReadPosRankSum=0.659;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307959    GT:AD:DP:GQ:PL    1/1:2,19:21:18.44:403,18,0
X    69504078    rs12556489    T    G    411.77    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.097;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.995;MQ=56.92;MQ0=0;MQRankSum=2.097;QD=17.9;ReadPosRankSum=1.018;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARR3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000307959    GT:AD:DP:GQ:PL    1/1:2,19:23:11.67:444,12,0
X    69510335    rs1199470    C    T    933.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.81;MQ=51.78;MQ0=0;QD=32.18;SNPEFF_AMINO_ACID_CHANGE=P9;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_69510288_69510428;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF4A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374388    GT:AD:DP:GQ:PL    1/1:0,29:29:75.22:966,75,0
X    69595909    rs1199407    C    G    615.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=34.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374388    GT:AD:DP:GQ:PL    1/1:0,18:18:48.15:648,48,0
X    69639698    rs1886892    G    T    615.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=36.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KIF4A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374388    GT:AD:DP:GQ:PL    1/1:0,17:17:51.13:648,51,0
X    69652762    rs2296542    A    G    296.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.97;SNPEFF_AMINO_ACID_CHANGE=R434;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_69652762_69652790;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GDPD2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536730    GT:AD:DP:GQ:PL    1/1:0,11:11:24.08:330,24,0
X    69668463    rs2281868    A    G    263.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.94;SNPEFF_AMINO_ACID_CHANGE=T131A;SNPEFF_CODON_CHANGE=Aca/Gca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_69668430_69668483;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000194900    GT:AD:DP:GQ:PL    1/1:0,11:11:24.04:296,24,0
X    69672655    rs12010766    T    C    147.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194900    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:180,15,0
X    69673464    rs28391150    C    T    196.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194900    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:229,18,0
X    69718314    rs1886890    C    T    125.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000194900    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:158,12,0
X    69719575    rs2274311    C    T    55.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489733    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:87,6,0
X    69720172    rs41306139    C    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DLG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000466140    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
X    69774517    rs4844240    A    T    795.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_AMINO_ACID_CHANGE=T448;SNPEFF_CODON_CHANGE=acT/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_69774501_69774650;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000374320    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:828,63,0
X    69844799    rs5980983    T    C    425.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344304    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:459,33,0
X    69890179    rs5980996    T    A    361.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344304    GT:AD:DP:GQ:PL    1/1:0,10:10:30.08:395,30,0
X    70146034    rs41310635    A    G    391.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298085    GT:AD:DP:GQ:PL    1/1:0,13:13:33.11:424,33,0
X    70146475    rs6525447    G    C    52.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.14;SNPEFF_AMINO_ACID_CHANGE=L508V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_70146377_70146543;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
X    70148551    rs67961679    G    A    46.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298085    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
X    70148590    rs5936604    T    C    114.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298085    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
X    70148927    rs5936605    T    A    279.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=23.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298085    GT:AD:DP:GQ:PL    1/1:0,12:12:24.08:312,24,0
X    70149360    rs5936606    G    A    120.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC7A3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298085    GT:AD:DP:GQ:PL    1/1:0,4:4:12.03:153,12,0
X    70182933    rs56148224    G    C    1811.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=55.73;MQ0=0;QD=36.24;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-320L13.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429775    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1845,138,0
X    70282696    rs34211894    A    G    259.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=SNX12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276105    GT:AD:DP:GQ:PL    1/1:0,10:10:21.07:293,21,0
X    70321631    rs5980742    T    G    459.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.5115;MQ=57.05;MQ0=0;QD=28.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf65;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374251    GT:AD:DP:GQ:PL    1/1:0,16:16:36.12:492,36,0
X    70326654    rs4612544    A    G    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FOXO4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341558    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    70330596    rs11574625    T    C    232.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=IL2RG;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000374191    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:265,21,0
X    70345593    rs2075790    C    T    768.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=32.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333646    GT:AD:DP:GQ:PL    1/1:0,24:24:63.19:801,63,0
X    70348317    rs5030617    G    C    1072.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462984    GT:AD:DP:GQ:PL    1/1:0,31:31:81.24:1106,81,0
X    70351838    rs6525471    C    T    299.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460771    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:333,24,0
X    70356642    rs12852829    T    C    339.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333646    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:373,30,0
X    70356704    rs41298482    C    T    632.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=31.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333646    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:665,51,0
X    70361273    rs7051453    C    T    45.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.67;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MED12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478889    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
X    70373216    rs2233440    C    T    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358741    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    70384267    rs7051693    C    T    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358741    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
X    70390007    rs112095862    G    GCA    187.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=24.4282;IndelType=I;MQ=58.32;MQ0=0;QD=26.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NLGN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395855    GT:AD:DP:GQ:PL    1/1:2,5:7:15.05:229,15,0
X    70469182    rs2341539    G    A    131.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMYM3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000314425    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
X    70608033    rs28382172    G    A    498.02    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.102;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;MQRankSum=-0.51;QD=29.3;ReadPosRankSum=-1.531;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276072    GT:AD:DP:GQ:PL    1/1:1,16:17:7.48:530,7,0
X    70617443    rs5980760    A    G    217.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276072    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:250,18,0
X    70814656    .    A    T    53.60    MQFilter40;QDFilter2    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.055;DP=41;Dels=0.0;FS=15.441;HRun=3;HaplotypeScore=1.9612;MQ=30.1;MQ0=13;MQRankSum=-0.94;QD=1.31;ReadPosRankSum=-0.392;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ACRC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373695    GT:AD:DP:GQ:PL    0/1:18,22:41:83.59:84,0,120
X    70979274    .    G    GCGCA    557.54    PASS    AB=0.543;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.062;DP=19;FS=0.0;HRun=0;HaplotypeScore=107.1075;IndelType=I;MQ=44.27;MQ0=0;MQRankSum=2.292;QD=29.34;ReadPosRankSum=0.168;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=pseudogene;SNPEFF_GENE_NAME=BX276092.3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456199    GT:AD:DP:GQ:PL    0/1:3,13:19:33.86:597,0,34
X    71350133    rs6624595    T    G    2859.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.97;MQ0=0;QD=31.77;SNPEFF_AMINO_ACID_CHANGE=S420R;SNPEFF_CODON_CHANGE=Agt/Cgt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_71348014_71351751;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGAG4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000479991    GT:AD:DP:GQ:PL    1/1:0,90:90:99:2892,220,0
X    71351519    rs12390168    C    A    125.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000540800    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:158,12,0
X    71364479    rs11094247    A    C    1007.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NHSL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373677    GT:AD:DP:GQ:PL    1/1:0,29:29:81.26:1040,81,0
X    71372190    rs6625956    T    C    672.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.55;MQ0=0;QD=22.42;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=BX119917.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401114    GT:AD:DP:GQ:PL    1/1:0,30:30:60.17:706,60,0
X    71372207    rs72051850    GCACACACA    G    731.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=0;HaplotypeScore=346.5962;IndelType=D;MQ=36.82;MQ0=0;QD=30.49;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=BX119917.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401114    GT:AD:DP:GQ:PL    1/1:16,8:24:33.10:774,33,0
X    71379881    rs6624600    G    A    834.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.77;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-262D11.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432517    GT:AD:DP:GQ:PL    1/1:0,24:24:66.21:867,66,0
X    71401607    rs6525589    G    A    110.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=55.22;MQ0=0;QD=12.23;SNPEFF_AMINO_ACID_CHANGE=R16Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_71401526_71401678;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218432    GT:AD:DP:GQ:PL    1/1:0,9:9:12.03:143,12,0
X    71401614    rs7058353    C    A    120.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.84;MQ0=0;QD=15.1;SNPEFF_AMINO_ACID_CHANGE=S18R;SNPEFF_CODON_CHANGE=agC/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_71401526_71401678;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIN4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218432    GT:AD:DP:GQ:PL    1/1:0,8:8:12.03:153,12,0
X    71406301    rs6525591    T    C    123.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218432    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:156,12,0
X    71424718    rs6625979    G    A    85.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=PIN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423432    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
X    72223371    rs62613896    A    G    360.24    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=31.71;MQ0=2;QD=25.73;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PABPC1L2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538388    GT:AD:DP:GQ:PL    1/1:0,14:14:33.07:393,33,0
X    72899365    rs6648376    T    C    317.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.9;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHIC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373502    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:351,27,0
X    73043817    rs1620574    T    C    579.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XIST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000433732    GT:AD:DP:GQ:PL    1/1:0,19:19:51.14:612,51,0
X    73066439    rs1894271    T    C    1568.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6671;MQ=59.53;MQ0=0;QD=32.01;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=XIST;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429829    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1601,120,0
X    73425062    rs3747435    T    G    1493.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.166;DB;DP=52;Dels=0.0;FS=4.962;HRun=0;HaplotypeScore=0.0;MQ=60.21;MQ0=0;MQRankSum=-0.69;QD=28.73;ReadPosRankSum=1.309;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RAB11FIP1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000438337    GT:AD:DP:GQ:PL    1/1:2,50:52:99:1527,126,0
X    73436932    rs174209    G    C    1644.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=59.22;MQ0=0;QD=30.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR374B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390738    GT:AD:DP:GQ:PL    1/1:0,53:54:99:1677,120,0
X    73438641    rs174208    T    G    92.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR374B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000390738    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:125,9,0
X    73506653    rs71700920    T    TA    48.61    PASS    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.466;DB;DP=12;FS=0.0;HRun=16;HaplotypeScore=130.7477;IndelType=I;MQ=57.0;MQ0=0;MQRankSum=1.031;QD=4.05;ReadPosRankSum=-0.466;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR374A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362298    GT:AD:DP:GQ:PL    0/1:6,6:12:53.52:88,0,54
X    73617109    rs34974916    C    T    1198.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=35.26;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=PRKRIRP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000398672    GT:AD:DP:GQ:PL    1/1:0,34:34:90.29:1232,90,0
X    74375871    rs1039123    G    C    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCB7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253577    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    74494470    rs4892396    T    G    211.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.25;SNPEFF_AMINO_ACID_CHANGE=R127;SNPEFF_CODON_CHANGE=cgT/cgG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_74493925_74494475;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UPRT;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373379    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:244,18,0
X    74494483    rs5981831    A    G    144.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373379    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:177,15,0
X    74523367    rs972561    A    G    1086.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.22;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=UPRT;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462237    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1120,81,0
X    74546623    rs7059610    G    A    619.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.74;MQ0=0;QD=34.4;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-311P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432946    GT:AD:DP:GQ:PL    1/1:0,18:18:48.16:652,48,0
X    74546693    rs145714162    AT    A    913.38    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.619;DB;DP=29;FS=0.0;HRun=3;HaplotypeScore=105.1042;IndelType=D;MQ=60.43;MQ0=0;MQRankSum=-1.114;QD=31.5;ReadPosRankSum=-0.371;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-311P8.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432946    GT:AD:DP:GQ:PL    1/1:1,28:29:41.03:955,41,0
X    74598903    rs5937369    G    A    532.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=38.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373361    GT:AD:DP:GQ:PL    1/1:0,14:14:42.11:565,42,0
X    74698827    .    T    TA    150.11    PASS    AC=2;AF=1.00;AN=2;DP=7;FS=0.0;HRun=10;HaplotypeScore=16.9771;IndelType=I;MQ=61.53;MQ0=0;QD=21.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC15;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373361    GT:AD:DP:GQ:PL    1/1:0,7:7:18.05:192,18,0
X    74964215    rs3861332    T    C    1207.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=30.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=retrotransposed;SNPEFF_GENE_NAME=TTC3P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000426611    GT:AD:DP:GQ:PL    1/1:0,40:40:90.29:1241,90,0
X    75395172    rs2301863    T    C    93.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf26;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373357    GT:AD:DP:GQ:PL    1/1:0,5:5:9.03:125,9,0
X    76226185    rs5938804    T    C    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR325;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385260    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    77286830    rs72083715    CT    C    664.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.0;HRun=6;HaplotypeScore=60.8987;IndelType=D;MQ=61.34;MQ0=0;QD=27.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341514    GT:AD:DP:GQ:PL    1/1:2,22:24:66.16:706,66,0
X    77296047    rs5913631    G    C    1632.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=35.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000341514    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1665,120,0
X    77298857    rs4826245    G    A    2108.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.27;MQ0=0;QD=33.47;SNPEFF_AMINO_ACID_CHANGE=E1272K;SNPEFF_CODON_CHANGE=Gag/Aag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_77298815_77298932;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP7A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000343533    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2142,160,0
X    77528317    rs320995    G    A    928.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.03;SNPEFF_AMINO_ACID_CHANGE=F309;SNPEFF_CODON_CHANGE=ttC/ttT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_77526961_77529270;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CYSLTR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373304    GT:AD:DP:GQ:PL    1/1:0,29:29:72.23:962,72,0
X    78426471    rs3810712    C    T    329.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_X_78426469_78427726;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276077    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:362,27,0
X    78426488    rs3810711    T    C    399.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.65;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_X_78426469_78427726;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR174;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276077    GT:AD:DP:GQ:PL    1/1:0,15:15:33.10:433,33,0
X    78426988    rs3827440    T    C    1059.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.12;SNPEFF_AMINO_ACID_CHANGE=S162P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_78426469_78427726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR174;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276077    GT:AD:DP:GQ:PL    1/1:0,32:32:84.27:1093,84,0
X    78617053    rs1736662    A    G    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462038    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
X    78617999    rs1751133    T    C    216.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461357    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:249,18,0
X    78618050    rs1751134    A    G    509.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ITM2A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461357    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:543,39,0
X    79283388    rs7877748    T    C    137.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TBX22;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373291    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:170,12,0
X    79527580    rs1887421    T    A    888.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-217H19.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000399581    GT:AD:DP:GQ:PL    1/1:0,26:26:66.22:922,66,0
X    79698593    rs1113265    C    G    1126.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.56;SNPEFF_AMINO_ACID_CHANGE=D185E;SNPEFF_CODON_CHANGE=gaC/gaG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_79698021_79700810;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM46D;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000308293    GT:AD:DP:GQ:PL    1/1:0,30:30:87.25:1160,87,0
X    79828901    rs1848538    A    G    77.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.95;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=HK2P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000447818    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:110,9,0
X    79937084    rs3122406    G    A    132.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373275    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
X    79943569    rs3122407    T    C    1229.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=30.73;SNPEFF_AMINO_ACID_CHANGE=K1288R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_79943568_79943624;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000373275    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1262,102,0
X    79999796    rs76180772    T    TCAC    734.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.0;HRun=0;HaplotypeScore=39.4448;IndelType=I;MQ=59.03;MQ0=0;QD=52.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRWD3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373275    GT:AD:DP:GQ:PL    1/1:1,13:14:39.13:777,39,0
X    82763150    rs56035532    G    T    86.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=28.9;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POU3F4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373200    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:119,9,0
X    83352970    rs10521366    T    C    495.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.75;MQ0=0;QD=33.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262752    GT:AD:DP:GQ:PL    1/1:0,15:15:39.13:529,39,0
X    83403178    rs1539517    G    C    345.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RPS6KA6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262752    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:379,27,0
X    84520059    rs12560186    T    C    272.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.06;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF711;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276123    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:305,24,0
X    84520105    rs12557399    G    A    337.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF711;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276123    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:371,27,0
X    84524854    rs66527141    T    A    88.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF711;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276123    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:121,9,0
X    84534383    rs2227090    A    C    1324.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=27.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373145    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1358,111,0
X    84537071    rs3810760    G    A    364.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373145    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:397,30,0
X    84561465    rs363780    G    C    257.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262753    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:291,24,0
X    84562118    rs363776    C    T    346.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262753    GT:AD:DP:GQ:PL    1/1:0,11:11:30.09:380,30,0
X    84563135    rs363774    T    A    272.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.23;SNPEFF_AMINO_ACID_CHANGE=M349L;SNPEFF_CODON_CHANGE=Atg/Ttg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_84563130_84563222;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POF1B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000262753    GT:AD:DP:GQ:PL    1/1:0,10:10:24.05:305,24,0
X    84569256    rs17004160    G    C    53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=POF1B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262753    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
X    85149414    rs1569506    G    C    82.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.58;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CHM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357749    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:115,9,0
X    85969403    rs5967753    A    C    75.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344497    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:108,9,0
X    86070798    rs7065094    T    G    40.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=20.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344497    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:72,6,0
X    86071151    rs12837683    C    G    151.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DACH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344497    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:184,15,0
X    86869103    rs5924064    A    G    490.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=37.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373114    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:524,39,0
X    86869348    rs5922464    C    A    211.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373114    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:245,18,0
X    86872866    rs5924069    G    T    364.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373114    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:398,30,0
X    86887124    rs222083    A    G    281.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373114    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:315,24,0
X    86887244    rs222084    C    T    798.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=T453;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_86887210_86887434;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373114    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:832,60,0
X    88008423    rs5940915    A    C    135.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.92;SNPEFF_AMINO_ACID_CHANGE=Y3S;SNPEFF_CODON_CHANGE=tAt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_88008408_88009786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276127    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:168,12,0
X    88008807    rs5984611    G    A    525.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.06;SNPEFF_AMINO_ACID_CHANGE=R131H;SNPEFF_CODON_CHANGE=cGt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_88008408_88009786;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXCR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276127    GT:AD:DP:GQ:PL    1/1:0,15:15:42.12:559,42,0
X    88009322    rs5984613    A    G    407.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.0;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CPXCR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276127    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:441,33,0
X    89177024    rs5983979    A    G    231.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=44.97;MQ0=0;QD=25.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGIF2LX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000283891    GT:AD:DP:GQ:PL    1/1:0,9:9:24.03:265,24,0
X    89177673    rs2290380    G    A    650.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.2434;MQ=59.38;MQ0=0;QD=32.5;SNPEFF_AMINO_ACID_CHANGE=V197I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_89177064_89177882;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TGIF2LX;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000283891    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:683,51,0
X    91066106    rs147052878    G    C    85.91    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.07;MQ0=0;QD=21.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH11X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395337    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:118,9,0
X    91066365    .    G    A    211.93    MQFilter40    AC=2;AF=1.00;AN=2;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.63;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH11X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395337    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:245,21,0
X    91070969    rs149444031    A    C    50.96    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.0;MQ0=0;QD=16.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH11X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000395337    GT:AD:DP:GQ:PL    1/1:0,3:3:9.01:83,9,0
X    91456621    rs5942152    G    T    88.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH11X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298274    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
X    91758965    rs5942264    C    T    277.69    MQFilter40    AB=0.12;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.854;DB;DP=25;Dels=0.0;FS=8.674;HRun=3;HaplotypeScore=0.0;MQ=26.85;MQ0=4;MQRankSum=-1.558;QD=11.11;ReadPosRankSum=1.759;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PCDH11X;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298274    GT:AD:DP:GQ:PL    0/1:3,22:25:44.97:308,0,45
X    92543096    rs9698724    T    C    783.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.19;MQ0=0;QD=34.05;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=ST13P18;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000456632    GT:AD:DP:GQ:PL    1/1:0,23:23:66.21:816,66,0
X    92927634    rs1045686    G    C    2010.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=34.66;SNPEFF_AMINO_ACID_CHANGE=P217A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_92925934_92928296;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NAP1L3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000543136    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2044,150,0
X    96194485    rs11795730    A    G    133.38    HaplotypeScoreFilter13    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=17.3971;MQ=49.38;MQ0=0;QD=14.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324765    GT:AD:DP:GQ:PL    1/1:0,9:9:12.04:166,12,0
X    96196880    rs1494130    A    G    115.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324765    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:148,12,0
X    96197175    rs5920973    G    A    1132.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324765    GT:AD:DP:GQ:PL    1/1:0,32:32:87.24:1166,87,0
X    96213213    rs5966792    T    C    449.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324765    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:483,36,0
X    96502650    rs1409192    C    T    520.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324765    GT:AD:DP:GQ:PL    1/1:0,17:17:42.13:554,42,0
X    96724467    rs6620284    C    T    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DIAPH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324765    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
X    99410964    rs1962318    C    T    1438.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.4725;MQ=57.94;MQ0=0;QD=31.96;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-402K9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429844    GT:AD:DP:GQ:PL    1/1:0,44:45:99:1471,111,0
X    99411197    rs11092252    T    C    915.33    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=0.328;DB;DP=41;Dels=0.0;FS=3.632;HRun=0;HaplotypeScore=0.0;MQ=31.64;MQ0=4;MQRankSum=1.171;QD=22.33;ReadPosRankSum=0.983;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP11-402K9.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000429844    GT:AD:DP:GQ:PL    1/1:1,40:41:71.44:948,71,0
X    99849017    rs2073162    G    A    885.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=27.67;SNPEFF_AMINO_ACID_CHANGE=V102;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_99848892_99849032;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNMD;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000373031    GT:AD:DP:GQ:PL    1/1:0,31:32:66.22:918,66,0
X    99849051    rs2073163    T    C    628.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.2;MQ0=0;QD=24.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373031    GT:AD:DP:GQ:PL    1/1:0,25:26:48.16:661,48,0
X    99849419    rs41310715    G    A    236.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373031    GT:AD:DP:GQ:PL    1/1:0,9:9:21.06:270,21,0
X    99852893    rs7051417    G    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TNMD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485971    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    99919733    rs2022475    G    A    91.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.34;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRPX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000373004    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
X    99941705    rs2022039    T    C    638.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=31.91;SNPEFF_AMINO_ACID_CHANGE=I420V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_99941676_99941778;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000263033    GT:AD:DP:GQ:PL    1/1:0,20:20:48.16:671,48,0
X    99941980    rs2022040    T    C    557.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263033    GT:AD:DP:GQ:PL    1/1:0,15:15:45.13:590,45,0
X    99943103    rs5920842    A    C    45.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263033    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
X    99943244    rs5921627    G    C    693.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263033    GT:AD:DP:GQ:PL    1/1:0,21:21:54.16:726,54,0
X    99956157    rs5967170    T    C    198.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263033    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:231,18,0
X    99957136    rs5967171    T    C    139.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=27.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SYTL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263033    GT:AD:DP:GQ:PL    1/1:0,5:5:15.04:172,15,0
X    100105008    rs1476011    T    C    291.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NOX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217885    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:324,24,0
X    100212525    rs6616208    T    C    1055.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.9;MQ0=0;QD=30.16;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=RP3-341D10.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332270    GT:AD:DP:GQ:PL    1/1:0,35:35:81.25:1089,81,0
X    100240575    rs17257516    T    A    1541.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.62;MQ0=0;QD=31.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARL13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000450049    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1575,123,0
X    100242305    rs5921702    G    A    1274.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARL13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372953    GT:AD:DP:GQ:PL    1/1:0,35:35:99:1307,99,0
X    100243459    rs3934462    G    T    503    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.53;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARL13A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372953    GT:AD:DP:GQ:PL    1/1:0,15:15:42.11:536,42,0
X    100245606    rs6523438    A    G    1087.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=60.0;MQ0=0;QD=31.08;SNPEFF_AMINO_ACID_CHANGE=P143;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_100245551_100245668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARL13A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372953    GT:AD:DP:GQ:PL    1/1:0,35:35:90.26:1121,90,0
X    100265552    rs5921705    T    A    1597.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372931    GT:AD:DP:GQ:PL    1/1:0,50:50:99:1630,117,0
X    100265713    rs7885599    T    C    611.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372931    GT:AD:DP:GQ:PL    1/1:0,17:17:48.15:645,48,0
X    100265874    rs5921706    T    A    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372931    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    100275630    .    AGTTT    A    1274.31    PASS    AC=2;AF=1.00;AN=2;DP=30;FS=0.0;HRun=0;HaplotypeScore=161.2712;IndelType=D;MQ=58.36;MQ0=0;QD=42.48;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TRMT2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000478422    GT:AD:DP:GQ:PL    1/1:5,25:30:75.26:1316,75,0
X    100547933    rs5951328    A    G    3995.33    PASS    AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.22;MQ0=0;QD=33.57;SNPEFF_AMINO_ACID_CHANGE=L34P;SNPEFF_CODON_CHANGE=cTt/cCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_100547778_100548045;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TAF7L;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372907    GT:AD:DP:GQ:PL    1/1:0,119:119:99:3995,310,0
X    100604757    rs700    T    G    1451.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.45;MQ0=0;QD=34.57;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470069    GT:AD:DP:GQ:PL    1/1:1,41:42:99:1485,117,0
X    100608040    rs184472722    C    T    408.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=25.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470329    GT:AD:DP:GQ:PL    1/1:0,16:16:39.11:442,39,0
X    100609547    rs2071223    G    A    3995.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.7882;MQ=60.0;MQ0=0;QD=33.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000470329    GT:AD:DP:GQ:PL    1/1:0,118:118:99:3995,301,0
X    100615025    rs5951412    G    T    214.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.54;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464006    GT:AD:DP:GQ:PL    1/1:0,13:13:18.06:248,18,0
X    100615478    rs2855259    C    T    237.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.72;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000464006    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:271,21,0
X    100617372    rs2071222    T    C    265.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=26.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BTK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000308731    GT:AD:DP:GQ:PL    1/1:0,10:10:24.07:299,24,0
X    100742551    rs2361298    G    A    307.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARMCX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000423738    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:340,27,0
X    100743037    rs963618    C    T    938.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.17;MQ0=0;QD=33.51;SNPEFF_AMINO_ACID_CHANGE=Y39;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_100742995_100743086;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARMCX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423738    GT:AD:DP:GQ:PL    1/1:0,28:28:72.22:971,72,0
X    100743546    rs6621080    C    T    736.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.03;MQ0=0;QD=30.69;SNPEFF_AMINO_ACID_CHANGE=Y94;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_100743431_100750794;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARMCX4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000423738    GT:AD:DP:GQ:PL    1/1:0,24:24:57.19:769,57,0
X    100743826    rs5951332    A    G    809.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.97;SNPEFF_AMINO_ACID_CHANGE=R188G;SNPEFF_CODON_CHANGE=Agg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_100743431_100750794;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=ARMCX4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000423738    GT:AD:DP:GQ:PL    1/1:0,27:27:66.20:842,66,0
X    100807909    rs6616255    A    G    653.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.41;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_X_100807792_100809683;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMCX1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372829    GT:AD:DP:GQ:PL    1/1:0,19:19:51.16:687,51,0
X    100871148    rs35319186    T    C    1242.90    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=25.39;MQ0=40;QD=15.54;SNPEFF_AMINO_ACID_CHANGE=S155G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_100870110_100871756;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMCX6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361910    GT:AD:DP:GQ:PL    1/1:15,65:80:99:1276,105,0
X    100880857    rs3205455    G    A    885.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DB;DP=34;Dels=0.0;FS=3.144;HRun=2;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;MQRankSum=0.473;QD=26.05;ReadPosRankSum=-0.053;SNPEFF_AMINO_ACID_CHANGE=K296;SNPEFF_CODON_CHANGE=aaG/aaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_100879824_100882833;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ARMCX3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000341189    GT:AD:DP:GQ:PL    1/1:1,33:34:41.27:919,41,0
X    100911066    rs3850315    C    T    3147.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=Q503;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_100910267_100912701;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMCX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000328766    GT:AD:DP:GQ:PL    1/1:0,96:96:99:3181,238,0
X    100912776    rs5951282    G    A    90.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARMCX2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475854    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:122,9,0
X    101093954    rs147512591    C    T    435    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=19.52;MQ0=1;QD=20.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NXF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361708    GT:AD:DP:GQ:PL    1/1:0,21:21:56.91:468,57,0
X    101095482    rs146382081    A    G    90.49    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=18.66;MQ0=3;QD=10.05;SNPEFF_AMINO_ACID_CHANGE=S229;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_101095471_101095580;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NXF5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361708    GT:AD:DP:GQ:PL    1/1:0,9:9:12.01:123,12,0
X    101095895    .    G    A    485.34    MQFilter40    AC=2;AF=1.00;AN=2;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.39;MQ0=9;QD=15.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=NXF5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361708    GT:AD:DP:GQ:PL    1/1:7,25:32:45.06:518,45,0
X    101138792    rs5944882    T    C    1023.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=60.0;MQ0=0;QD=34.13;SNPEFF_AMINO_ACID_CHANGE=Q365R;SNPEFF_CODON_CHANGE=cAg/cGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_101138032_101139793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458570    GT:AD:DP:GQ:PL    1/1:0,30:30:84.25:1057,84,0
X    101139758    rs17282855    C    T    2324.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=30.59;SNPEFF_AMINO_ACID_CHANGE=R214K;SNPEFF_CODON_CHANGE=aGg/aAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_101137262_101139793;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372782    GT:AD:DP:GQ:PL    1/1:1,75:76:99:2358,187,0
X    101139931    rs41298508    T    C    46.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372782    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
X    101141776    rs67953349    AC    A    153.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=12.5507;IndelType=D;MQ=64.19;MQ0=0;QD=30.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZMAT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372782    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:195,15,0
X    101429267    rs57843551    T    C    462.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.54;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP1-158I15.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000514289    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:495,36,0
X    101623586    rs111593567    ATGG    A    1366.37    PASS    AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.0;HRun=0;HaplotypeScore=440.7462;IndelType=D;MQ=39.68;MQ0=0;QD=13.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NXF2B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372749    GT:AD:DP:GQ:PL    1/1:65,37:102:99:1408,108,0
X    101821814    rs34723335    A    G    1464.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.6;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=NXF4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000360035    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1497,111,0
X    102471531    rs1064784    G    T    280.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.13;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEX4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372691    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:313,24,0
X    102564583    rs7557    A    G    2525.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=48.58;MQ0=2;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=L108;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_102564430_102564909;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BEX2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372674    GT:AD:DP:GQ:PL    1/1:0,77:77:99:2558,202,0
X    102831217    rs221946    C    T    49.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.7;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_X_102831159_102831460;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEAL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372629    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    102864442    .    A    G    160.95    QDFilter2    AB=0.786;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.105;DP=84;Dels=0.0;FS=21.621;HRun=1;HaplotypeScore=0.9999;MQ=48.47;MQ0=1;MQRankSum=-5.81;QD=1.92;ReadPosRankSum=-1.917;SNPEFF_AMINO_ACID_CHANGE=Q150;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_102863966_102864854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEAL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243286    GT:AD:DP:GQ:PL    0/1:66,18:84:99:191,0,2103
X    102864565    rs74490974    G    A    87.98    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.459;DB;DP=42;Dels=0.0;FS=3.331;HRun=1;HaplotypeScore=0.0;MQ=50.65;MQ0=3;MQRankSum=-3.753;QD=2.09;ReadPosRankSum=0.099;SNPEFF_AMINO_ACID_CHANGE=Q191;SNPEFF_CODON_CHANGE=caG/caA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_102863966_102864854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEAL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243286    GT:AD:DP:GQ:PL    0/1:22,20:42:99:118,0,782
X    102864568    rs75427253    G    A    86.98    QDFilter2    AB=0.545;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.278;DB;DP=44;Dels=0.0;FS=3.27;HRun=0;HaplotypeScore=0.0;MQ=51.12;MQ0=3;MQRankSum=-3.903;QD=1.98;ReadPosRankSum=0.225;SNPEFF_AMINO_ACID_CHANGE=R192;SNPEFF_CODON_CHANGE=agG/agA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_102863966_102864854;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TCEAL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243286    GT:AD:DP:GQ:PL    0/1:24,20:44:99:117,0,774
X    102930960    rs874    A    G    1571.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.7608;MQ=59.09;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORF4L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000418819    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1604,138,0
X    102962181    rs7064350    A    G    283.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLRA4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000436213    GT:AD:DP:GQ:PL    1/1:0,9:9:27.06:317,27,0
X    103183356    rs34006779    A    C    902.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.11;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=LL0XNC01-116E7.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000451950    GT:AD:DP:GQ:PL    1/1:0,31:31:72.23:935,72,0
X    103219004    rs1180753    C    T    212.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.3;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMSB15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000419165    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:245,18,0
X    103267865    rs553509    C    T    664.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;QD=31.63;SNPEFF_AMINO_ACID_CHANGE=R123H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_103267742_103268259;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2BFWT;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000217926    GT:AD:DP:GQ:PL    1/1:0,21:21:54.17:697,54,0
X    103268241    rs7885967    G    A    682.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=37.93;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2BFM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243297    GT:AD:DP:GQ:PL    1/1:0,18:18:54.18:716,54,0
X    103294760    rs2301384    C    T    200.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.41;SNPEFF_AMINO_ACID_CHANGE=Q176*;SNPEFF_CODON_CHANGE=Cag/Tag;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_X_103294472_103294971;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=H2BFM;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000243297    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:233,18,0
X    103316459    .    G    A    497.10    MQFilter40    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=0.642;DP=64;Dels=0.0;FS=1.051;HRun=3;HaplotypeScore=1.5661;MQ=30.21;MQ0=3;MQRankSum=0.108;QD=7.77;ReadPosRankSum=-1.955;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=LL0XNC01-240C2.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000441761    GT:AD:DP:GQ:PL    0/1:33,31:64:99:527,0,719
X    103495552    rs41305431    T    C    2372.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4105;MQ=59.35;MQ0=0;QD=33.42;SNPEFF_AMINO_ACID_CHANGE=K193R;SNPEFF_CODON_CHANGE=aAg/aGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_103494719_103495577;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ESX1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372588    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2405,184,0
X    104464276    rs66463437    CA    C    1003.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=2;HaplotypeScore=178.8783;IndelType=D;MQ=46.43;MQ0=0;QD=32.38;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_X_104463613_104464442;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX13A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000372575    GT:AD:DP:GQ:PL    1/1:4,27:30:81.26:1046,81,0
X    104464281    rs67876044    TC    T    929.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=4;HaplotypeScore=206.4257;IndelType=D;MQ=49.74;MQ0=0;QD=29.06;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_X_104463613_104464442;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TEX13A;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000372575    GT:AD:DP:GQ:PL    1/1:2,30:32:81.25:972,81,0
X    104650306    rs4826923    G    A    430.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL1RAPL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344799    GT:AD:DP:GQ:PL    1/1:0,15:15:36.11:464,36,0
X    105132225    rs17332342    T    C    324.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.48;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243300    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:358,27,0
X    105153001    rs209372    A    G    919.37    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.8;MQ0=0;MQRankSum=1.516;QD=28.73;ReadPosRankSum=1.191;SNPEFF_AMINO_ACID_CHANGE=K456;SNPEFF_CODON_CHANGE=aaA/aaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_105152719_105153874;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRK;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000243300    GT:AD:DP:GQ:PL    1/1:1,31:32:75.23:952,75,0
X    105179132    rs209095    C    T    1094.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.3;MQ0=0;QD=33.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NRK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000243300    GT:AD:DP:GQ:PL    1/1:0,33:33:84.28:1128,84,0
X    106016551    rs2880013    G    T    113.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255499    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
X    106028508    rs138667894    G    T    288.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255499    GT:AD:DP:GQ:PL    1/1:0,12:12:35.98:321,36,0
X    106028509    rs142692078    C    T    288.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RNF128;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000255499    GT:AD:DP:GQ:PL    1/1:0,12:12:35.98:321,36,0
X    106200202    rs6622126    G    A    1652.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.92;SNPEFF_AMINO_ACID_CHANGE=T221I;SNPEFF_CODON_CHANGE=aCt/aTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_106200166_106200234;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MORC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535534    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1685,123,0
X    106296350    rs6622139    T    C    1346.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.6651;MQ=57.75;MQ0=0;QD=31.32;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1380,105,0
X    106296438    .    G    A    139.30    PASS    AB=0.775;AC=1;AF=0.50;AN=2;BaseQRankSum=1.231;DP=41;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=53.45;MQ0=0;MQRankSum=-4.47;QD=3.4;ReadPosRankSum=1.911;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:31,9:41:99:169,0,1007
X    106296453    .    A    T    137.82    PASS    AB=0.763;AC=1;AF=0.50;AN=2;BaseQRankSum=2.335;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.67;MQ0=0;MQRankSum=-4.395;QD=3.63;ReadPosRankSum=3.09;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:29,9:38:99:168,0,1047
X    106313508    rs6622143    G    A    1304.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=31.82;SNPEFF_AMINO_ACID_CHANGE=T283I;SNPEFF_CODON_CHANGE=aCa/aTa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_106313420_106313655;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM41;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000203616    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1337,99,0
X    106360086    rs6523920    C    A    85.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.39;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBM41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000203616    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:117,9,0
X    106362078    rs5903298    CT    C    2751.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.0;HRun=2;HaplotypeScore=197.4145;IndelType=D;MQ=59.15;MQ0=0;QD=37.69;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP62CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372461    GT:AD:DP:GQ:PL    1/1:1,72:73:99:2793,217,0
X    106396189    rs2275789    A    G    284.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP62CL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000421752    GT:AD:DP:GQ:PL    1/1:0,11:11:27.08:317,27,0
X    106396402    rs1298577    A    G    3369.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.79;SNPEFF_AMINO_ACID_CHANGE=I177T;SNPEFF_CODON_CHANGE=aTc/aCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_106396402_106396536;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP62CL;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000372466    GT:AD:DP:GQ:PL    1/1:0,106:106:99:3370,256,0
X    106396455    rs1285590    A    G    3072.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.75;MQ0=0;QD=33.76;SNPEFF_AMINO_ACID_CHANGE=R159;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_106396402_106396536;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NUP62CL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000372465    GT:AD:DP:GQ:PL    1/1:0,90:91:99:3105,235,0
X    106459810    rs5962806    T    G    109.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336387    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:142,12,0
X    106462267    rs1954365    C    T    157.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336387    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
X    106486286    .    T    TG    278.75    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;DP=13;FS=0.0;HRun=9;HaplotypeScore=59.5571;IndelType=I;MQ=60.73;MQ0=0;MQRankSum=1.448;QD=21.44;ReadPosRankSum=0.869;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf41;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336387    GT:AD:DP:GQ:PL    1/1:1,11:13:9.87:320,10,0
X    106515914    rs41307381    T    G    224.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.94;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MYCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372451    GT:AD:DP:GQ:PL    1/1:0,9:9:21.05:257,21,0
X    106516125    rs4826957    G    C    385.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.69;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MYCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372451    GT:AD:DP:GQ:PL    1/1:0,13:13:30.10:419,30,0
X    106516786    rs5962813    T    A    1190.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.13;MQ0=0;QD=37.2;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=MYCL2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000372451    GT:AD:DP:GQ:PL    1/1:0,32:32:90.28:1224,90,0
X    106672403    rs2018409    A    G    335.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL035088.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385111    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:368,30,0
X    107328436    rs807178    G    A    983.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=39.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338548    GT:AD:DP:GQ:PL    1/1:0,25:25:75.25:1017,75,0
X    107328522    rs41300898    A    T    188.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PSMD10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338548    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:222,18,0
X    107415825    rs2881142    T    C    689.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.77;MQ0=0;QD=32.85;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,21:21:57.18:723,57,0
X    107418281    rs2295914    C    T    1716.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.49;MQ0=0;QD=38.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1750,129,0
X    107418906    rs4623610    A    G    1934.44    PASS    AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=2.4706;MQ=59.68;MQ0=0;QD=32.79;SNPEFF_AMINO_ACID_CHANGE=R936;SNPEFF_CODON_CHANGE=cgT/cgC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_107418884_107419027;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,59:59:99:1967,150,0
X    107423674    rs34662832    TACAC    T    247.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=39.6104;IndelType=D;MQ=51.77;MQ0=0;QD=41.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:290,18,0
X    107430579    rs1266715    G    A    554.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,16:16:45.15:587,45,0
X    107433688    rs1042065    A    G    2060.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=35.52;SNPEFF_AMINO_ACID_CHANGE=S454P;SNPEFF_CODON_CHANGE=Tca/Cca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_107433622_107433726;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,58:58:99:2093,156,0
X    107437848    rs1266719    G    C    3363.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.97;SNPEFF_AMINO_ACID_CHANGE=F307L;SNPEFF_CODON_CHANGE=ttC/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_107437764_107437871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394872    GT:AD:DP:GQ:PL    1/1:0,91:91:99:3364,247,0
X    107438119    rs1266720    G    T    517.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,14:14:42.13:550,42,0
X    107438505    rs35601899    C    CT    141.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.0;HRun=14;HaplotypeScore=71.7242;IndelType=I;MQ=52.81;MQ0=0;QD=11.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:6,6:12:21.46:183,21,0
X    107448387    rs1266729    G    T    209.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:242,18,0
X    107448639    rs1266730    G    T    3418.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,95:95:99:3418,247,0
X    107450101    rs1266732    T    G    272.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:0,10:10:24.08:306,24,0
X    107455014    rs1266736    C    T    1157.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468338    GT:AD:DP:GQ:PL    1/1:0,32:32:87.29:1191,87,0
X    107463090    rs71883398    CCCATATTGTATT    C    1022.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=0;HaplotypeScore=133.7444;IndelType=D;MQ=34.79;MQ0=0;QD=92.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=COL4A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334504    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:1064,30,0
X    108684908    rs658454    C    T    169.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2F;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218006    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
X    108708516    rs502209    C    T    1816.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.64;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=R296Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_108708371_108708672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218006    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1850,141,0
X    108708552    rs12008095    A    G    1700.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=59.63;MQ0=0;QD=33.34;SNPEFF_AMINO_ACID_CHANGE=L284P;SNPEFF_CODON_CHANGE=cTg/cCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_108708371_108708672;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GUCY2F;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218006    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1733,141,0
X    108904729    rs839408    C    T    1388.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.53;MQ0=0;QD=34.72;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340800    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1422,105,0
X    108917757    rs5942830    T    C    264.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.81;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340800    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:298,21,0
X    108917773    rs5943413    A    G    216.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=ACSL4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000340800    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:249,18,0
X    109387928    rs946820    G    A    320.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000288381    GT:AD:DP:GQ:PL    1/1:0,10:10:27.09:354,27,0
X    109419165    rs2795995    G    A    226.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=25.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=TMEM164;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461715    GT:AD:DP:GQ:PL    1/1:0,9:9:21.04:259,21,0
X    109694685    rs2073787    T    A    2657.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.4538;MQ=59.42;MQ0=0;QD=33.64;SNPEFF_AMINO_ACID_CHANGE=G280;SNPEFF_CODON_CHANGE=ggT/ggA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_109693795_109697892;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RGAG1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000465301    GT:AD:DP:GQ:PL    1/1:0,79:79:99:2691,205,0
X    110366760    rs7879757    A    T    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PAK3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262836    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:79,6,0
X    113949525    rs5988103    G    A    336.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276198    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:369,27,0
X    113961410    rs2248440    G    A    121.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276198    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:154,12,0
X    113965516    rs2497539    A    G    73.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.4;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR2C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276198    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:105,9,0
X    113965735    rs6318    G    C    1879.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=32.41;SNPEFF_AMINO_ACID_CHANGE=C23S;SNPEFF_CODON_CHANGE=tGt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_113965703_113966016;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HTR2C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276198    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1913,138,0
X    114400318    rs4361922    T    G    867.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LRCH2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317135    GT:AD:DP:GQ:PL    1/1:0,26:26:72.22:901,72,0
X    114425400    rs12857270    G    A    165.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=G466R;SNPEFF_CODON_CHANGE=Gga/Aga;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_114423963_114427431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMXL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424776    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:198,15,0
X    114426171    rs5946294    C    T    686.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.59;SNPEFF_AMINO_ACID_CHANGE=R723C;SNPEFF_CODON_CHANGE=Cgc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_114423963_114427431;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMXL3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000424776    GT:AD:DP:GQ:PL    1/1:0,24:24:57.12:719,57,0
X    114426917    rs4911809    C    T    193.65    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.28;SNPEFF_AMINO_ACID_CHANGE=Y971;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_114423963_114427431;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RBMXL3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000424776    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:227,18,0
X    114953234    .    T    C    765.43    MQFilter40    AC=2;AF=1.00;AN=2;DP=44;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=21.72;MQ0=17;QD=17.4;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-241P17.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000449327    GT:AD:DP:GQ:PL    1/1:10,34:44:75.16:798,75,0
X    117043122    rs2041633    T    C    81.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=KLHL13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262820    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
X    117677349    rs1294781    G    T    106    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.2;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276202    GT:AD:DP:GQ:PL    1/1:0,5:5:12.01:138,12,0
X    117677642    rs1294780    A    G    439.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=36.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276202    GT:AD:DP:GQ:PL    1/1:0,12:12:36.11:473,36,0
X    117679234    rs72427914    CT    C    62.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=11;HaplotypeScore=35.1007;IndelType=D;MQ=56.04;MQ0=0;QD=10.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276202    GT:AD:DP:GQ:PL    1/1:0,5:6:14.01:104,14,0
X    117722176    rs41312765    G    A    1708.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.189;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9998;MQ=60.0;MQ0=0;MQRankSum=1.121;QD=32.86;ReadPosRankSum=1.529;SNPEFF_AMINO_ACID_CHANGE=E624;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_117722100_117722284;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK11;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276202    GT:AD:DP:GQ:PL    1/1:1,51:52:91.78:1742,92,0
X    117775565    rs17326758    T    G    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276202    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
X    117810831    rs5957040    C    T    372.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276202    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:406,30,0
X    117817266    rs4372173    C    T    520.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.66;MQ0=0;QD=37.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DOCK11;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276202    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:553,42,0
X    117874898    rs2246663    T    C    1123.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=34.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL13RA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371642    GT:AD:DP:GQ:PL    1/1:0,33:33:87.27:1156,87,0
X    117910504    rs5903529    G    GT    30.50    QDFilter2    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.573;DB;DP=17;FS=0.0;HRun=21;HaplotypeScore=178.1794;IndelType=I;MQ=46.23;MQ0=0;MQRankSum=-1.203;QD=1.79;ReadPosRankSum=-1.683;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL13RA1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371637    GT:AD:DP:GQ:PL    0/1:12,5:17:15.95:69,0,16
X    118117063    rs12391696    T    C    280.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.12;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LONRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304778    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:314,24,0
X    118123765    rs5910473    G    T    52.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.11;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LONRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304778    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    118124240    rs3747384    C    G    187.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LONRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304778    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:220,18,0
X    118143043    rs2168379    A    G    786.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=34.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LONRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304778    GT:AD:DP:GQ:PL    1/1:0,23:23:63.16:820,63,0
X    118147233    rs2290514    G    T    354.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.11;MQ0=0;QD=35.47;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LONRF3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000304778    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:388,30,0
X    118148229    rs2278954    A    G    1719.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.61;MQ0=0;QD=35.81;SNPEFF_AMINO_ACID_CHANGE=A422;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118148170_118148319;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=LONRF3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000422289    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1752,132,0
X    118250710    rs5957111    A    C    180.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.09;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-347D8.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402510    GT:AD:DP:GQ:PL    1/1:0,6:6:18.05:213,18,0
X    118281538    rs5910522    C    A    1069.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.49;SNPEFF_AMINO_ACID_CHANGE=G103V;SNPEFF_CODON_CHANGE=gGc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118281436_118281556;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-347D8.6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000402510    GT:AD:DP:GQ:PL    1/1:0,31:31:81.27:1102,81,0
X    118281635    rs11405916    G    GC    413.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=20.2161;IndelType=I;MQ=60.98;MQ0=0;QD=37.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-347D8.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402510    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:456,33,0
X    118284610    rs5957122    A    G    460.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.72;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP13-347D8.6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000402510    GT:AD:DP:GQ:PL    1/1:0,15:15:39.10:494,39,0
X    118544448    rs16274    T    C    134.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217909    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:167,12,0
X    118585943    rs425331    A    G    854.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.66;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A43;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217909    GT:AD:DP:GQ:PL    1/1:0,27:27:75.21:888,75,0
X    118603550    rs5910591    A    G    4147.99    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.495;DB;DP=130;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.7608;MQ=59.14;MQ0=0;MQRankSum=0.495;QD=31.91;ReadPosRankSum=-1.622;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000317881    GT:AD:DP:GQ:PL    1/1:1,129:130:99:4148,278,0
X    118603773    rs148920941    T    C    155.60    QDFilter2    AB=0.774;AC=1;AF=0.50;AN=2;BaseQRankSum=1.166;DB;DP=84;Dels=0.0;FS=1.494;HRun=0;HaplotypeScore=1.8288;MQ=54.15;MQ0=1;MQRankSum=-5.553;QD=1.85;ReadPosRankSum=0.348;SNPEFF_AMINO_ACID_CHANGE=L87;SNPEFF_CODON_CHANGE=ctT/ctC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118603624_118604110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317881    GT:AD:DP:GQ:PL    0/1:65,19:84:99:186,0,2144
X    118603818    rs77766798    T    G    159.04    PASS    AB=0.743;AC=1;AF=0.50;AN=2;BaseQRankSum=0.23;DB;DP=70;Dels=0.0;FS=3.248;HRun=2;HaplotypeScore=3.4279;MQ=53.35;MQ0=1;MQRankSum=-4.811;QD=2.27;ReadPosRankSum=0.508;SNPEFF_AMINO_ACID_CHANGE=G102;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118603624_118604110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317881    GT:AD:DP:GQ:PL    0/1:52,18:70:99:189,0,1710
X    118603830    rs73637847    A    G    57.31    QDFilter2    AB=0.791;AC=1;AF=0.50;AN=2;BaseQRankSum=0.919;DB;DP=68;Dels=0.0;FS=1.556;HRun=1;HaplotypeScore=2.179;MQ=54.5;MQ0=1;MQRankSum=-4.482;QD=0.84;ReadPosRankSum=-1.225;SNPEFF_AMINO_ACID_CHANGE=R106;SNPEFF_CODON_CHANGE=agA/agG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118603624_118604110;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317881    GT:AD:DP:GQ:PL    0/1:53,14:68:87.31:87,0,1758
X    118603844    rs371749    T    G    1647.04    PASS    AB=0.197;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.516;DB;DP=66;Dels=0.0;FS=1.545;HRun=0;HaplotypeScore=0.0;MQ=54.83;MQ0=0;MQRankSum=4.676;QD=24.96;ReadPosRankSum=3.95;SNPEFF_AMINO_ACID_CHANGE=L111R;SNPEFF_CODON_CHANGE=cTc/cGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118603624_118604110;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A5;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000317881    GT:AD:DP:GQ:PL    0/1:13,53:66:99:1677,0,123
X    118604436    rs12390    T    C    1071.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=59.36;MQ0=0;QD=29.76;SNPEFF_AMINO_ACID_CHANGE=T233;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118604336_118604476;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000317881    GT:AD:DP:GQ:PL    1/1:0,36:36:87.25:1104,87,0
X    118604536    rs5910592    C    T    414.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=34.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475354    GT:AD:DP:GQ:PL    1/1:0,12:12:33.11:447,33,0
X    118604553    rs112853674    T    TA    368.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.0;HRun=4;HaplotypeScore=57.8953;IndelType=I;MQ=57.66;MQ0=0;QD=36.86;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC25A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475354    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:411,30,0
X    118676250    rs5910610    T    A    49.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320339    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    118678364    rs5910611    G    A    1817.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.05;SNPEFF_AMINO_ACID_CHANGE=G111;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118678316_118678454;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf56;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000536133    GT:AD:DP:GQ:PL    1/1:0,55:55:99:1851,147,0
X    118699320    rs5910616    A    G    1798.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.08;MQ0=0;QD=35.27;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_X_118699088_118699336;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf56;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320339    GT:AD:DP:GQ:PL    1/1:0,51:51:99:1832,135,0
X    118754064    rs72177566    CA    C    183.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.0;HRun=14;HaplotypeScore=105.5732;IndelType=D;MQ=52.24;MQ0=0;QD=9.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343984    GT:AD:DP:GQ:PL    1/1:5,14:19:32.63:226,33,0
X    118758107    rs141163974    GT    G    513.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.0;HRun=12;HaplotypeScore=166.9326;IndelType=D;MQ=60.46;MQ0=0;QD=17.12;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394616    GT:AD:DP:GQ:PL    1/1:5,23:30:74.86:556,75,0
X    118758128    rs2782252    T    G    522.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.95;MQ0=0;QD=26.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394616    GT:AD:DP:GQ:PL    1/1:0,20:20:45.14:555,45,0
X    118809732    rs67811876    G    A    192.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=27.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000343984    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:225,18,0
X    118827317    rs17261138    A    C    495.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=30.96;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SEPT6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000394616    GT:AD:DP:GQ:PL    1/1:0,16:16:39.13:528,39,0
X    118893054    rs2782223    C    A    89.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.68;SNPEFF_AMINO_ACID_CHANGE=R142;SNPEFF_CODON_CHANGE=Cgg/Agg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118892576_118894164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343905    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
X    118893137    rs2782224    T    C    48.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.38;SNPEFF_AMINO_ACID_CHANGE=D169;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118892576_118894164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343905    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
X    118893413    rs2782225    T    C    36.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=18.1;SNPEFF_AMINO_ACID_CHANGE=S261;SNPEFF_CODON_CHANGE=agT/agC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_118892576_118894164;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ANKRD58;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000343905    GT:AD:DP:GQ:PL    1/1:0,2:2:6.01:67,6,0
X    118920809    rs7885997    C    T    150.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.16;MQ0=0;QD=30.15;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361575    GT:AD:DP:GQ:PL    1/1:0,5:5:15.03:184,15,0
X    118921530    rs73214964    A    C    232.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361575    GT:AD:DP:GQ:PL    1/1:0,7:7:21.06:265,21,0
X    118921593    rs34447789    T    C    93.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.27;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361575    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:125,9,0
X    118925181    rs41304508    C    A    724.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=32.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361575    GT:AD:DP:GQ:PL    1/1:0,22:22:60.18:757,60,0
X    118925450    rs28384478    A    G    80.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RPL39;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361575    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:113,9,0
X    119590533    rs12097    T    A    614.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.74;SNPEFF_AMINO_ACID_CHANGE=V52;SNPEFF_CODON_CHANGE=gtA/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_119590506_119590624;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=LAMP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000200639    GT:AD:DP:GQ:PL    1/1:0,20:20:48.14:648,48,0
X    119669592    .    C    A    47.30    QDFilter2    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.856;DP=24;Dels=0.0;FS=0.0;HRun=6;HaplotypeScore=11.7367;MQ=43.04;MQ0=0;MQRankSum=-3.583;QD=1.97;ReadPosRankSum=2.628;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CUL4B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000336592    GT:AD:DP:GQ:PL    0/1:8,16:24:77.29:77,0,292
X    120008979    rs871733    T    C    1063.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.63;MQ0=0;QD=31.29;SNPEFF_AMINO_ACID_CHANGE=P182;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_120008750_120009779;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CT47B1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371311    GT:AD:DP:GQ:PL    1/1:0,34:34:90.24:1097,90,0
X    120181352    rs5956265    T    G    60.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=15.07;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328078    GT:AD:DP:GQ:PL    1/1:0,4:4:9.01:92,9,0
X    120181353    rs5956266    T    C    62.85    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.12;MQ0=0;QD=15.71;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GLUD2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000328078    GT:AD:DP:GQ:PL    1/1:0,3:4:9.02:95,9,0
X    121605667    rs5909892    C    G    522.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.71;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=AL513487.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408390    GT:AD:DP:GQ:PL    1/1:0,17:17:45.13:555,45,0
X    122318386    rs58044961    A    AG    3729.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.0;HRun=0;HaplotypeScore=165.4061;IndelType=I;MQ=60.21;MQ0=0;QD=47.21;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000479118    GT:AD:DP:GQ:PL    1/1:1,78:79:99:3730,235,0
X    122319917    rs2269551    T    C    314.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.45;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264357    GT:AD:DP:GQ:PL    1/1:0,10:10:30.09:348,30,0
X    122336448    rs2285127    T    C    787.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.83;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264357    GT:AD:DP:GQ:PL    1/1:0,24:24:60.19:821,60,0
X    122336600    rs78631607    T    TG    252.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=3;HaplotypeScore=12.8316;IndelType=I;MQ=61.53;MQ0=0;QD=36.03;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_X_122336488_122336603;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000335161    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:294,21,0
X    122386936    rs3747322    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264357    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    122528803    rs550640    T    C    920.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=35.42;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264357    GT:AD:DP:GQ:PL    1/1:0,26:26:72.24:954,72,0
X    122537277    rs502434    T    C    3690.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=59.79;MQ0=0;QD=33.55;SNPEFF_AMINO_ACID_CHANGE=N384;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_122537263_122537370;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541091    GT:AD:DP:GQ:PL    1/1:0,109:110:99:3690,283,0
X    122537418    rs504096    C    T    1418.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.6;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000264357    GT:AD:DP:GQ:PL    1/1:0,41:41:99:1452,111,0
X    122616962    .    CT    C    90.45    PASS    AC=2;AF=1.00;AN=2;DP=16;FS=0.0;HRun=15;HaplotypeScore=66.6274;IndelType=D;MQ=55.73;MQ0=0;QD=5.65;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GRIA3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371251    GT:AD:DP:GQ:PL    1/1:5,8:16:23.65:132,24,0
X    122805421    rs2105889    C    A    132.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.49;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=THOC2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000245838    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
X    123189846    rs66507365    G    GT    176.58    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=10;HaplotypeScore=28.5573;IndelType=I;MQ=57.79;MQ0=0;QD=22.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218089    GT:AD:DP:GQ:PL    1/1:1,7:8:21.05:219,21,0
X    123194867    rs59630312    T    C    45.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.84;MQ0=0;QD=22.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218089    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:77,6,0
X    123199993    rs72427896    ATT    A    35.54    QDFilter2    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=25;FS=0.0;HRun=27;HaplotypeScore=174.0575;IndelType=D;MQ=42.83;MQ0=0;MQRankSum=-0.736;QD=1.42;ReadPosRankSum=0.736;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455404    GT:AD:DP:GQ:PL    1/1:12,5:25:8.94:77,9,0
X    123540315    rs960869    G    T    1787.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9999;MQ=59.13;MQ0=0;QD=33.72;SNPEFF_AMINO_ACID_CHANGE=T1662;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_123540167_123540339;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371130    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1820,141,0
X    123556622    rs5911838    C    T    334.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.7887;MQ=57.39;MQ0=0;QD=37.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=STAG2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000469481    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:368,27,0
X    123587110    rs2223416    C    A    444.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ODZ1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461429    GT:AD:DP:GQ:PL    1/1:0,13:13:36.11:477,36,0
X    125953932    rs5931715    A    G    320.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=54.65;MQ0=0;QD=35.57;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371125    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:353,27,0
X    125954900    rs41309536    C    T    844.25    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.764;DB;DP=29;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.6651;MQ=59.2;MQ0=0;MQRankSum=0.301;QD=29.11;ReadPosRankSum=0.387;SNPEFF_AMINO_ACID_CHANGE=Y93;SNPEFF_CODON_CHANGE=taC/taT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_125954642_125955769;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf64;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371125    GT:AD:DP:GQ:PL    1/1:2,27:29:7.94:876,8,0
X    125955199    rs4289953    T    C    614.67    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.52;DB;DP=20;Dels=0.0;FS=3.245;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=0.173;QD=30.73;ReadPosRankSum=-1.041;SNPEFF_AMINO_ACID_CHANGE=M193T;SNPEFF_CODON_CHANGE=aTg/aCg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_125954642_125955769;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf64;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000371125    GT:AD:DP:GQ:PL    1/1:1,19:20:15.93:647,16,0
X    125955644    rs2269776    A    T    131.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.8;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf64;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371125    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:164,12,0
X    128880614    rs3747343    T    C    1996.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9979;MQ=60.0;MQ0=0;QD=31.68;SNPEFF_AMINO_ACID_CHANGE=P149;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_128880571_128880839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2029,159,0
X    128885575    rs1771603    G    A    265.72    MQFilter40;SnpCluster    AB=0.263;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.372;DB;DP=19;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=9.9781;MQ=33.96;MQ0=2;MQRankSum=0.791;QD=13.99;ReadPosRankSum=-3.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    0/1:5,14:19:88.65:296,0,89
X    128885579    rs187447712    G    A    292.37    MQFilter40;SnpCluster    AB=0.238;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.065;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=9.9781;MQ=33.52;MQ0=2;MQRankSum=0.694;QD=13.92;ReadPosRankSum=-3.287;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    0/1:5,16:21:85.64:322,0,86
X    128885583    .    G    A    186.83    MQFilter40;SnpCluster    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.07;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=9.9781;MQ=32.84;MQ0=2;MQRankSum=-1.954;QD=7.47;ReadPosRankSum=-1.643;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    0/1:12,13:25:99:217,0,253
X    128885587    rs191922555    G    A    191.77    MQFilter40;SnpCluster    AB=0.44;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.236;DB;DP=25;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=5.9288;MQ=31.34;MQ0=2;MQRankSum=0.157;QD=7.67;ReadPosRankSum=-0.976;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    0/1:11,14:25:99:222,0,221
X    128885591    .    G    A    225.27    MQFilter40;SnpCluster    AB=0.385;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.051;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9315;MQ=31.25;MQ0=2;MQRankSum=-1.562;QD=8.66;ReadPosRankSum=-0.398;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    0/1:10,16:26:99:255,0,182
X    128885595    rs182541529    G    A    240.83    MQFilter40;SnpCluster    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.585;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9315;MQ=29.22;MQ0=2;MQRankSum=0.848;QD=10.03;ReadPosRankSum=-0.111;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    0/1:8,16:24:99:271,0,118
X    128885596    rs188164470    A    G    43.13    MQFilter40;QDFilter2;SnpCluster    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.037;DB;DP=24;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.9315;MQ=29.22;MQ0=2;MQRankSum=0.0;QD=1.8;ReadPosRankSum=0.862;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    0/1:19,5:24:73.12:73,0,308
X    128885606    rs192896226    G    A    45.87    MQFilter40;QDFilter2    AB=0.808;AC=1;AF=0.50;AN=2;BaseQRankSum=0.782;DB;DP=26;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9332;MQ=34.22;MQ0=2;MQRankSum=-0.64;QD=1.76;ReadPosRankSum=-1.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371105    GT:AD:DP:GQ:PL    0/1:21,5:26:75.86:76,0,397
X    128889464    rs5932674    G    A    87.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.98;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=XPNPEP2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000371106    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:120,9,0
X    128925156    rs5932684    T    G    171.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SASH3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000476532    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:204,15,0
X    128948511    rs3747340    T    C    2283.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.615;DB;DP=62;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=-1.229;QD=36.84;ReadPosRankSum=-1.565;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000406492    GT:AD:DP:GQ:PL    1/1:1,61:62:99:2317,135,0
X    128948893    rs5932686    T    C    277.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=5.7163;MQ=47.12;MQ0=0;QD=15.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357166    GT:AD:DP:GQ:PL    1/1:0,15:18:30.05:311,30,0
X    128957640    rs2275605    T    C    1113.45    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=1.8938;MQ=59.39;MQ0=0;QD=29.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZDHHC9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357166    GT:AD:DP:GQ:PL    1/1:0,38:38:90.26:1146,90,0
X    129147079    rs4830173    T    C    460.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=35.4;SNPEFF_AMINO_ACID_CHANGE=F111L;SNPEFF_CODON_CHANGE=Ttc/Ctc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_129146926_129150189;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=BCORL1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218147    GT:AD:DP:GQ:PL    1/1:0,13:13:39.12:493,39,0
X    129203355    rs9282674    C    T    2636.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=57.49;MQ0=0;QD=36.12;SNPEFF_AMINO_ACID_CHANGE=S369;SNPEFF_CODON_CHANGE=tcG/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_129203275_129203652;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ELF4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000308167    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2669,202,0
X    129265394    rs210023    A    G    98.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.68;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287295    GT:AD:DP:GQ:PL    1/1:0,4:4:12.02:131,12,0
X    129269980    rs209998    G    A    1199.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.77;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000533719    GT:AD:DP:GQ:PL    1/1:0,39:39:90.30:1233,90,0
X    129283520    rs1139851    A    G    1283.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.55;SNPEFF_AMINO_ACID_CHANGE=D4;SNPEFF_CODON_CHANGE=gaT/gaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_129283444_129283543;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000535724    GT:AD:DP:GQ:PL    1/1:0,42:42:96.32:1316,96,0
X    129290699    rs189994    T    C    368.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.5;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AIFM1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287295    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
X    129338766    rs608117    G    A    251.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.62;MQ0=0;QD=35.92;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000066465    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:284,21,0
X    129349295    rs209238    T    G    1446.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=31.45;SNPEFF_AMINO_ACID_CHANGE=G568;SNPEFF_CODON_CHANGE=ggA/ggC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_129349167_129349307;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280C;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000066465    GT:AD:DP:GQ:PL    1/1:0,46:46:99:1480,111,0
X    129354240    rs1160681    C    A    478.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=34.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000066465    GT:AD:DP:GQ:PL    1/1:0,13:14:39.12:512,39,0
X    129354254    rs113474402    TAA    T    552.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.0;HRun=11;HaplotypeScore=128.8347;IndelType=D;MQ=59.35;MQ0=0;QD=26.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF280C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000066465    GT:AD:DP:GQ:PL    1/1:2,19:21:57.11:594,57,0
X    130217020    rs5932835    G    C    409.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.29;MQ0=0;QD=37.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP36;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000276211    GT:AD:DP:GQ:PL    1/1:0,11:11:33.11:442,33,0
X    130413442    rs10521765    G    C    114.52    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370900    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:147,12,0
X    130415818    rs1128617    T    C    776.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.96;SNPEFF_AMINO_ACID_CHANGE=E440;SNPEFF_CODON_CHANGE=gaA/gaG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_130415640_130415918;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370904    GT:AD:DP:GQ:PL    1/1:0,21:21:60.19:809,60,0
X    130416958    rs5932877    C    T    1107.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.58;SNPEFF_AMINO_ACID_CHANGE=V307;SNPEFF_CODON_CHANGE=gtG/gtA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_130416954_130417238;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370904    GT:AD:DP:GQ:PL    1/1:0,34:34:84.27:1141,84,0
X    130419646    rs4830221    A    G    258.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=28.71;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361420    GT:AD:DP:GQ:PL    1/1:1,8:9:24.07:291,24,0
X    130420006    rs5930458    T    C    1048.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.13;SNPEFF_AMINO_ACID_CHANGE=P29;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_130419741_130420022;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370904    GT:AD:DP:GQ:PL    1/1:0,36:36:87.25:1082,87,0
X    130420415    rs4495600    T    C    873.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.49;MQ0=0;QD=34.94;SNPEFF_AMINO_ACID_CHANGE=S31;SNPEFF_CODON_CHANGE=tcA/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_130420411_130420437;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000361420    GT:AD:DP:GQ:PL    1/1:0,25:25:69.22:906,69,0
X    130423359    rs6637829    C    G    719.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.5784;MQ=57.97;MQ0=0;QD=31.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IGSF1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370904    GT:AD:DP:GQ:PL    1/1:0,23:23:57.18:753,57,0
X    131220194    rs1406867    C    T    395.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.93;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298542    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:428,33,0
X    131231430    rs57806249    TAC    T    128.91    PASS    AB=0.829;AC=1;AF=0.50;AN=2;BaseQRankSum=2.275;DB;DP=34;FS=0.0;HRun=0;HaplotypeScore=134.1637;IndelType=D;MQ=61.26;MQ0=0;MQRankSum=0.933;QD=3.79;ReadPosRankSum=-1.082;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FRMD7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298542    GT:AD:DP:GQ:PL    0/1:27,7:34:99:168,0,594
X    132351002    rs111884715    TA    T    498.94    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.096;DB;DP=43;FS=0.0;HRun=15;HaplotypeScore=237.4772;IndelType=D;MQ=57.76;MQ0=0;MQRankSum=-1.67;QD=11.6;ReadPosRankSum=2.025;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TFDP3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310125    GT:AD:DP:GQ:PL    1/1:10,30:43:48.31:541,48,0
X    132437337    rs1048369    G    A    903.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.76;SNPEFF_AMINO_ACID_CHANGE=A372V;SNPEFF_CODON_CHANGE=gCc/gTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_132437194_132437369;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535467    GT:AD:DP:GQ:PL    1/1:0,26:26:69.23:937,69,0
X    132438872    rs1129980    C    A    1283.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.65;SNPEFF_AMINO_ACID_CHANGE=E321D;SNPEFF_CODON_CHANGE=gaG/gaT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_132438753_132438889;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535467    GT:AD:DP:GQ:PL    1/1:0,36:36:96.32:1316,96,0
X    132549013    rs2073288    G    A    210.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.29;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPC4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000535467    GT:AD:DP:GQ:PL    1/1:0,8:8:18.06:243,18,0
X    133300745    rs4141390    T    C    132.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR106A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000384870    GT:AD:DP:GQ:PL    1/1:0,5:5:12.04:165,12,0
X    133379551    rs2428577    C    T    1298.01    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8667;MQ=59.36;MQ0=0;QD=36.06;SNPEFF_AMINO_ACID_CHANGE=L241;SNPEFF_CODON_CHANGE=Cta/Tta;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_133378807_133379808;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CCDC160;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370809    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1331,99,0
X    133511988    rs5978001    G    A    1032.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=34.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PHF6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000332070    GT:AD:DP:GQ:PL    1/1:0,30:30:81.25:1065,81,0
X    133675601    .    CACACACACACACAA    C    421.61    PASS    AC=2;AF=1.00;AN=2;DP=6;FS=0.0;HRun=0;HaplotypeScore=82.7171;IndelType=D;MQ=46.84;MQ0=0;QD=70.27;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=AC004383.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000414769    GT:AD:DP:GQ:PL    1/1:1,5:6:15.05:463,15,0
X    133680547    rs757309    G    A    87.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.18;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR424;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000362227    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:120,9,0
X    134025744    rs6529648    A    G    405.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.76;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOSPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370777    GT:AD:DP:GQ:PL    1/1:0,12:12:33.08:438,33,0
X    134029987    rs1984391    G    A    910.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MOSPD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000462060    GT:AD:DP:GQ:PL    1/1:0,28:28:69.23:943,69,0
X    134125475    rs11739    C    G    287.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.9;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=Z83826.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000330288    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:320,24,0
X    134156121    rs2475853    G    C    576.55    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;MQRankSum=1.404;QD=27.45;ReadPosRankSum=-0.578;SNPEFF_AMINO_ACID_CHANGE=R18G;SNPEFF_CODON_CHANGE=Cgg/Ggg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_134155849_134156172;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FAM127C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000538706    GT:AD:DP:GQ:PL    1/1:1,20:21:23.49:610,23,0
X    134185997    rs2498776    T    A    848.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.38;MQ0=0;QD=33.94;SNPEFF_AMINO_ACID_CHANGE=S48C;SNPEFF_CODON_CHANGE=Agc/Tgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_134184962_134186205;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=FAM127B;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370775    GT:AD:DP:GQ:PL    1/1:0,25:25:69.18:882,69,0
X    134654818    rs1890584    T    C    750.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=34.12;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000481908    GT:AD:DP:GQ:PL    1/1:0,22:22:63.20:784,63,0
X    134683864    rs6635060    A    G    297.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.24;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX26B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370752    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:331,24,0
X    134713855    rs2298301    G    A    1292.57    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559;DB;DP=43;Dels=0.0;FS=3.468;HRun=0;HaplotypeScore=0.9916;MQ=60.0;MQ0=0;MQRankSum=1.386;QD=30.06;ReadPosRankSum=0.606;SNPEFF_AMINO_ACID_CHANGE=L717;SNPEFF_CODON_CHANGE=ctG/ctA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_134713713_134714087;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX26B;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370752    GT:AD:DP:GQ:PL    1/1:1,42:43:63.08:1326,63,0
X    134856935    .    C    A    34.54    MQFilter40;QDFilter2    AB=0.937;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.106;DP=95;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=16.57;MQ0=59;MQRankSum=0.276;QD=0.36;ReadPosRankSum=-0.615;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CT45A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482795    GT:AD:DP:GQ:PL    0/1:89,6:95:64.53:65,0,606
X    134856937    .    G    A    37.55    MQFilter40;QDFilter2    AB=0.946;AC=1;AF=0.50;AN=2;BaseQRankSum=1.118;DP=92;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=16.14;MQ0=58;MQRankSum=0.681;QD=0.41;ReadPosRankSum=-0.097;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CT45A1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000482795    GT:AD:DP:GQ:PL    0/1:87,5:92:67.54:68,0,571
X    134928281    .    A    AC    534.06    PASS    AC=2;AF=1.00;AN=2;DP=12;FS=0.0;HRun=0;HaplotypeScore=25.5162;IndelType=I;MQ=29.04;MQ0=4;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CT45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420087    GT:AD:DP:GQ:PL    1/1:0,16:12:36.12:576,36,0
X    134945642    .    C    T    95.47    MQFilter40    AC=2;AF=1.00;AN=2;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=24.71;MQ0=1;QD=19.09;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CT45A5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370724    GT:AD:DP:GQ:PL    1/1:0,5:5:12.03:128,12,0
X    134947727    rs6635166    A    G    35.63    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.68;MQ0=1;QD=11.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CT45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420087    GT:AD:DP:GQ:PL    1/1:1,2:3:6.02:67,6,0
X    134948034    rs2034920    A    G    4352.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.64;MQ0=0;QD=28.83;SNPEFF_AMINO_ACID_CHANGE=N97;SNPEFF_CODON_CHANGE=aaT/aaC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_134947907_134948155;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CT45A5;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370724    GT:AD:DP:GQ:PL    1/1:0,151:151:99:4353,346,0
X    134948167    rs2501496    G    A    4016.67    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=2.6537;MQ=31.8;MQ0=6;QD=22.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=CT45A4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000420087    GT:AD:DP:GQ:PL    1/1:6,171:177:99:4017,328,0
X    134993589    rs4829798    A    G    686.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SAGE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000324447    GT:AD:DP:GQ:PL    1/1:0,20:20:57.18:719,57,0
X    135053063    rs4478733    G    C    167.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MMGT1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305963    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
X    135067686    .    G    T    186.04    PASS    AC=2;AF=1.00;AN=2;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=20.67;SNPEFF_AMINO_ACID_CHANGE=A9S;SNPEFF_CODON_CHANGE=Gca/Tca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135067627_135067986;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A6;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370695    GT:AD:DP:GQ:PL    1/1:2,6:9:18.05:219,18,0
X    135080623    rs72209004    C    CT    650.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.0;HRun=12;HaplotypeScore=139.379;IndelType=I;MQ=57.72;MQ0=0;QD=20.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLC9A6;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370695    GT:AD:DP:GQ:PL    1/1:5,23:32:77:692,77,0
X    135390818    rs5930928    T    A    317.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.29;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287534    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:351,27,0
X    135426693    rs4829829    A    G    1022.01    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DB;DP=31;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.4;MQ0=0;MQRankSum=0.391;QD=32.97;ReadPosRankSum=-1.286;SNPEFF_AMINO_ACID_CHANGE=I213M;SNPEFF_CODON_CHANGE=atA/atG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135426551_135432592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287534    GT:AD:DP:GQ:PL    1/1:1,30:31:39.51:1055,40,0
X    135426968    rs5930931    C    A    860.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.73;SNPEFF_AMINO_ACID_CHANGE=P163H;SNPEFF_CODON_CHANGE=cCt/cAt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135426551_135432592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394141    GT:AD:DP:GQ:PL    1/1:0,28:28:66.21:894,66,0
X    135429503    rs4829830    C    A    1814.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.195;DB;DP=60;Dels=0.0;FS=3.163;HRun=1;HaplotypeScore=0.9995;MQ=60.0;MQ0=0;MQRankSum=-0.299;QD=30.25;ReadPosRankSum=0.06;SNPEFF_AMINO_ACID_CHANGE=T1008N;SNPEFF_CODON_CHANGE=aCc/aAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135426551_135432592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394141    GT:AD:DP:GQ:PL    1/1:1,59:60:99:1848,110,0
X    135430044    rs877761    T    C    1638.68    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.44;SNPEFF_AMINO_ACID_CHANGE=T1188;SNPEFF_CODON_CHANGE=acT/acC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135426551_135432592;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394141    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1672,132,0
X    135430483    rs912002    T    C    1399.56    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.083;DB;DP=43;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.9664;MQ=59.57;MQ0=0;MQRankSum=-0.165;QD=32.55;ReadPosRankSum=0.578;SNPEFF_AMINO_ACID_CHANGE=S1335P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135426551_135432592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394141    GT:AD:DP:GQ:PL    1/1:1,42:43:99:1433,108,0
X    135431236    rs5930932    T    C    2303.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.73;MQ0=0;QD=33.38;SNPEFF_AMINO_ACID_CHANGE=F1586L;SNPEFF_CODON_CHANGE=Ttt/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135426551_135432592;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000394141    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2336,187,0
X    135431358    rs5930933    C    T    1213.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.71;MQ0=0;QD=33.7;SNPEFF_AMINO_ACID_CHANGE=P1626;SNPEFF_CODON_CHANGE=ccC/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135426551_135432592;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000394141    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1246,99,0
X    135435475    rs34980980    AT    A    973.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.0;HRun=9;HaplotypeScore=116.694;IndelType=D;MQ=58.81;MQ0=0;QD=24.97;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287534    GT:AD:DP:GQ:PL    1/1:1,38:39:99:1016,111,0
X    135438388    rs6635268    A    G    375.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.52;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000287534    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:408,30,0
X    135474420    rs1329546    C    A    778.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9973;MQ=57.97;MQ0=0;QD=33.84;SNPEFF_AMINO_ACID_CHANGE=T2400;SNPEFF_CODON_CHANGE=acC/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135474391_135474513;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287534    GT:AD:DP:GQ:PL    1/1:0,23:23:60.20:811,60,0
X    135474444    rs34255702    AGAT    A    907.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.0;HRun=0;HaplotypeScore=149.1867;IndelType=D;MQ=57.02;MQ0=0;QD=45.39;SNPEFF_AMINO_ACID_CHANGE=D2409-;SNPEFF_CODON_CHANGE=gat/-;SNPEFF_EFFECT=CODON_DELETION;SNPEFF_EXON_ID=exon_X_135474391_135474513;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000287534    GT:AD:DP:GQ:PL    1/1:1,19:20:57.19:950,57,0
X    135480126    rs5974595    T    C    768.30    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=29.55;SNPEFF_AMINO_ACID_CHANGE=F2510;SNPEFF_CODON_CHANGE=ttT/ttC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135480040_135480161;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287534    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:801,66,0
X    135496398    rs5930942    G    A    2794.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.93;SNPEFF_AMINO_ACID_CHANGE=T2758;SNPEFF_CODON_CHANGE=acG/acA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135496319_135496486;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR112;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000287534    GT:AD:DP:GQ:PL    1/1:0,80:80:99:2827,217,0
X    135572223    rs13306222    A    ACT    752.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=0;HaplotypeScore=37.3377;IndelType=I;MQ=61.43;MQ0=0;QD=50.17;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BRS3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370648    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:795,45,0
X    135730555    rs1126535    T    C    1427.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.14;SNPEFF_AMINO_ACID_CHANGE=L50;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_135730386_135730563;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD40LG;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370628    GT:AD:DP:GQ:PL    1/1:0,48:49:99:1461,108,0
X    135954343    .    C    A    278.46    PASS    AC=2;AF=1.00;AN=2;DP=9;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.94;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=RBMX;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320676    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:311,24,0
X    137749997    rs5976185    A    T    122.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.63;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000305414    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:155,12,0
X    138067202    rs34825181    A    G    1795.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.6;MQ0=0;QD=30.97;SNPEFF_AMINO_ACID_CHANGE=S15;SNPEFF_CODON_CHANGE=tcT/tcC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_138067180_138067253;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF13;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000455663    GT:AD:DP:GQ:PL    1/1:0,58:58:99:1829,141,0
X    138067368    rs5974786    G    A    496.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.849;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FGF13;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370603    GT:AD:DP:GQ:PL    1/1:0,14:14:42.10:529,42,0
X    138670041    rs142463749    C    T    419    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.71;MQ0=0;QD=32.23;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338585    GT:AD:DP:GQ:PL    1/1:0,13:13:36.09:452,36,0
X    138686878    rs61751333    G    A    1089.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.31;SNPEFF_AMINO_ACID_CHANGE=H172Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_138686840_138686909;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000446225    GT:AD:DP:GQ:PL    1/1:0,30:30:81.27:1122,81,0
X    138698652    rs68033160    GA    G    554.13    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DB;DP=35;FS=0.0;HRun=12;HaplotypeScore=97.983;IndelType=D;MQ=58.8;MQ0=0;MQRankSum=1.609;QD=15.83;ReadPosRankSum=1.362;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338585    GT:AD:DP:GQ:PL    1/1:7,27:35:53.19:596,53,0
X    138724725    rs926563    G    A    1272.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6988;MQ=60.0;MQ0=0;QD=32.62;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370578    GT:AD:DP:GQ:PL    1/1:0,39:39:96.31:1305,96,0
X    138774209    rs4824861    C    T    178.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.44;SNPEFF_AMINO_ACID_CHANGE=D26N;SNPEFF_CODON_CHANGE=Gat/Aat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_138774074_138774284;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MCF2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370578    GT:AD:DP:GQ:PL    1/1:0,7:7:15.05:211,15,0
X    138811003    rs2094702    G    A    279.43    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.05;MQ0=0;QD=34.93;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370543    GT:AD:DP:GQ:PL    1/1:0,8:8:24.07:312,24,0
X    138822956    rs2772195    T    C    52.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327569    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    138825675    rs1268015    T    C    47.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000327569    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
X    138882172    rs10717380    AC    A    169.41    PASS    AB=0.881;AC=1;AF=0.50;AN=2;BaseQRankSum=0.831;DB;DP=74;FS=11.357;HRun=11;HaplotypeScore=481.5713;IndelType=D;MQ=48.86;MQ0=0;MQRankSum=1.624;QD=2.29;ReadPosRankSum=1.057;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11C;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000485626    GT:AD:DP:GQ:PL    0/1:64,8:74:99:208,0,437
X    138897130    rs2491014    A    C    1307.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.8941;MQ=60.0;MQ0=0;QD=32.69;SNPEFF_AMINO_ACID_CHANGE=C111W;SNPEFF_CODON_CHANGE=tgT/tgG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_138897037_138897144;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP11C;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370557    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1341,99,0
X    139793630    rs5907616    G    A    43.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=10.86;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=RP1-177G6.2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370535    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:75,6,0
X    140008385    rs5907732    G    T    214.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.68;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR320D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408154    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:248,18,0
X    140008515    rs5907733    C    T    51.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.82;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR320D2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000408154    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    140271268    rs2038375    G    C    71.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.92;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=LDOC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460721    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:104,9,0
X    140335742    .    G    C    950.65    FSFilter60;MQFilter40    AB=0.43;AC=1;AF=0.50;AN=2;BaseQRankSum=3.215;DP=100;Dels=0.0;FS=61.503;HRun=1;HaplotypeScore=0.0;MQ=21.27;MQ0=20;MQRankSum=0.811;QD=9.51;ReadPosRankSum=6.03;SNPEFF_AMINO_ACID_CHANGE=L68V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140335596_140335871;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXC;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000358993    GT:AD:DP:GQ:PL    0/1:43,57:100:99:981,0,574
X    140336615    rs55683664    T    A    654.69    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=30.68;MQ0=2;QD=26.19;SNPEFF_EFFECT=UTR_5_PRIME;SNPEFF_EXON_ID=exon_X_140336519_140336629;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXC;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358993    GT:AD:DP:GQ:PL    1/1:0,25:25:57.11:688,57,0
X    140785588    rs610102    G    T    156.62    PASS    AB=0.738;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.286;DB;DP=42;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.7887;MQ=46.63;MQ0=0;MQRankSum=-3.891;QD=3.73;ReadPosRankSum=-0.343;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370515    GT:AD:DP:GQ:PL    0/1:31,11:42:99:187,0,1015
X    140785696    rs2983592    T    C    292.21    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.575;DB;DP=105;Dels=0.0;FS=37.715;HRun=0;HaplotypeScore=0.6651;MQ=49.43;MQ0=1;MQRankSum=-7.372;QD=2.78;ReadPosRankSum=-0.691;SNPEFF_AMINO_ACID_CHANGE=K74E;SNPEFF_CODON_CHANGE=Aag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140785568_140785843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370515    GT:AD:DP:GQ:PL    0/1:80,25:105:99:322,0,2641
X    140785739    rs149295712    A    C    1213.58    PASS    AB=0.604;AC=1;AF=0.50;AN=2;BaseQRankSum=0.394;DB;DP=139;Dels=0.0;FS=1.434;HRun=0;HaplotypeScore=2.4805;MQ=48.78;MQ0=1;MQRankSum=-6.887;QD=8.73;ReadPosRankSum=-0.358;SNPEFF_AMINO_ACID_CHANGE=F59L;SNPEFF_CODON_CHANGE=ttT/ttG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140785568_140785843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370515    GT:AD:DP:GQ:PL    0/1:84,55:139:99:1244,0,2645
X    140785741    rs144554749    A    C    1085.40    PASS    AB=0.596;AC=1;AF=0.50;AN=2;BaseQRankSum=-6.463;DB;DP=137;Dels=0.0;FS=2.342;HRun=0;HaplotypeScore=1.7465;MQ=48.93;MQ0=1;MQRankSum=-6.339;QD=7.92;ReadPosRankSum=0.149;SNPEFF_AMINO_ACID_CHANGE=F59V;SNPEFF_CODON_CHANGE=Ttt/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140785568_140785843;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXD;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370515    GT:AD:DP:GQ:PL    0/1:81,55:137:99:1115,0,2579
X    140785855    rs146412887    A    G    1574.82    PASS    AB=0.472;AC=1;AF=0.50;AN=2;BaseQRankSum=3.632;DB;DP=106;Dels=0.0;FS=1.849;HRun=0;HaplotypeScore=2.2408;MQ=47.8;MQ0=3;MQRankSum=-1.665;QD=14.86;ReadPosRankSum=0.467;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXD;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370515    GT:AD:DP:GQ:PL    0/1:50,56:106:99:1605,0,1465
X    140983031    rs176023    A    G    824.23    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-1.398;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.57;MQ=60.0;MQ0=0;MQRankSum=-1.398;QD=25.76;ReadPosRankSum=-0.168;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000298296    GT:AD:DP:GQ:PL    1/1:1,31:32:42.94:857,43,0
X    140983064    rs176024    G    A    1518.90    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DB;DP=45;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.734;MQ=59.49;MQ0=0;MQRankSum=-1.339;QD=33.75;ReadPosRankSum=-0.945;SNPEFF_AMINO_ACID_CHANGE=A307T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140983055_140983193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298296    GT:AD:DP:GQ:PL    1/1:1,44:45:79.75:1552,80,0
X    140983127    rs176026    G    A    1992.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.66;MQ0=0;QD=29.74;SNPEFF_AMINO_ACID_CHANGE=A328T;SNPEFF_CODON_CHANGE=Gca/Aca;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140983055_140983193;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000298296    GT:AD:DP:GQ:PL    1/1:0,67:67:99:2026,150,0
X    140984250    rs2205912    C    T    595.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=28.34;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_X_140984217_140984293;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000544766    GT:AD:DP:GQ:PL    1/1:0,21:21:48.14:628,48,0
X    140993150    rs5953637    T    C    608.18    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=30.41;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:0,20:20:51.16:641,51,0
X    140993640    .    T    A    81.62    QDFilter2    AB=0.783;AC=1;AF=0.50;AN=2;BaseQRankSum=2.233;DP=69;Dels=0.0;FS=23.5;HRun=1;HaplotypeScore=8.6381;MQ=54.54;MQ0=0;MQRankSum=-5.521;QD=1.18;ReadPosRankSum=0.196;SNPEFF_AMINO_ACID_CHANGE=S150R;SNPEFF_CODON_CHANGE=agT/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:54,15:69:99:112,0,1780
X    140993642    rs176037    C    G    52.31    QDFilter2    AB=0.848;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.975;DB;DP=68;Dels=0.0;FS=14.212;HRun=0;HaplotypeScore=8.6381;MQ=54.45;MQ0=0;MQRankSum=-4.73;QD=0.77;ReadPosRankSum=-0.903;SNPEFF_AMINO_ACID_CHANGE=T151S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:56,10:68:82.30:82,0,1838
X    140993654    rs139443648    T    C    44.40    QDFilter2    AB=0.813;AC=1;AF=0.50;AN=2;BaseQRankSum=1.693;DB;DP=75;Dels=0.0;FS=23.1;HRun=0;HaplotypeScore=5.9832;MQ=53.98;MQ0=0;MQRankSum=-5.364;QD=0.59;ReadPosRankSum=0.238;SNPEFF_AMINO_ACID_CHANGE=F155S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:61,14:75:74.40:74,0,1938
X    140993665    rs74966399    C    G    66.58    QDFilter2    AB=0.821;AC=1;AF=0.50;AN=2;BaseQRankSum=0.553;DB;DP=78;Dels=0.0;FS=22.966;HRun=0;HaplotypeScore=5.9899;MQ=53.57;MQ0=0;MQRankSum=-5.475;QD=0.85;ReadPosRankSum=2.428;SNPEFF_AMINO_ACID_CHANGE=P159A;SNPEFF_CODON_CHANGE=Ccc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:64,14:78:96.57:97,0,2049
X    140993667    rs75576571    C    A    39.14    QDFilter2    AB=0.818;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.575;DB;DP=77;Dels=0.0;FS=19.744;HRun=0;HaplotypeScore=8.9849;MQ=53.48;MQ0=0;MQRankSum=-5.395;QD=0.51;ReadPosRankSum=2.463;SNPEFF_AMINO_ACID_CHANGE=P159;SNPEFF_CODON_CHANGE=ccC/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:63,14:77:69.13:69,0,2014
X    140993695    rs76429235    G    T    72.66    QDFilter2;SnpCluster    AB=0.776;AC=1;AF=0.50;AN=2;BaseQRankSum=4.774;DB;DP=76;Dels=0.0;FS=27.63;HRun=0;HaplotypeScore=0.6651;MQ=52.8;MQ0=0;MQRankSum=-6.245;QD=0.96;ReadPosRankSum=0.199;SNPEFF_AMINO_ACID_CHANGE=A169S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:59,17:76:99:103,0,1809
X    140993698    .    G    T    75.65    QDFilter2;SnpCluster    AB=0.779;AC=1;AF=0.50;AN=2;BaseQRankSum=4.662;DP=77;Dels=0.0;FS=31.501;HRun=0;HaplotypeScore=0.6651;MQ=52.9;MQ0=0;MQRankSum=-6.021;QD=0.98;ReadPosRankSum=-0.224;SNPEFF_AMINO_ACID_CHANGE=A170S;SNPEFF_CODON_CHANGE=Gcc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:60,17:77:99:106,0,1782
X    140993703    rs75782140    C    G    66.85    QDFilter2;SnpCluster    AB=0.787;AC=1;AF=0.50;AN=2;BaseQRankSum=-5.089;DB;DP=75;Dels=0.0;FS=31.511;HRun=0;HaplotypeScore=0.0;MQ=52.78;MQ0=0;MQRankSum=-6.059;QD=0.89;ReadPosRankSum=-0.976;SNPEFF_AMINO_ACID_CHANGE=S171;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:59,16:75:96.85:97,0,1932
X    140993716    rs78700965    G    C    181.60    PASS    AB=0.762;AC=1;AF=0.50;AN=2;BaseQRankSum=0.625;DB;DP=84;Dels=0.0;FS=41.825;HRun=0;HaplotypeScore=1.9336;MQ=51.75;MQ0=0;MQRankSum=-6.138;QD=2.16;ReadPosRankSum=-2.61;SNPEFF_AMINO_ACID_CHANGE=V176L;SNPEFF_CODON_CHANGE=Gtg/Ctg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:64,20:84:99:212,0,1979
X    140993722    rs80314937    A    C    157.22    QDFilter2    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=3.412;DB;DP=82;Dels=0.0;FS=29.861;HRun=0;HaplotypeScore=1.9336;MQ=51.46;MQ0=0;MQRankSum=-6.325;QD=1.92;ReadPosRankSum=-2.689;SNPEFF_AMINO_ACID_CHANGE=I178L;SNPEFF_CODON_CHANGE=Att/Ctt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:61,21:82:99:187,0,1840
X    140993745    rs74333625    T    A    229.40    SnpCluster    AB=0.744;AC=1;AF=0.50;AN=2;BaseQRankSum=3.017;DB;DP=82;Dels=0.0;FS=1.177;HRun=1;HaplotypeScore=1.9436;MQ=50.72;MQ0=0;MQRankSum=-5.514;QD=2.8;ReadPosRankSum=0.192;SNPEFF_AMINO_ACID_CHANGE=S185R;SNPEFF_CODON_CHANGE=agT/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:61,21:82:99:259,0,1788
X    140993751    rs77851571    A    G    239.65    SnpCluster    AB=0.711;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.387;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=49.45;MQ0=0;MQRankSum=-4.515;QD=2.85;ReadPosRankSum=0.045;SNPEFF_AMINO_ACID_CHANGE=Q187;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:59,24:83:99:270,0,1869
X    140993755    rs74748246    C    A    472.52    SnpCluster    AB=0.663;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.376;DB;DP=83;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9967;MQ=48.76;MQ0=0;MQRankSum=-4.464;QD=5.69;ReadPosRankSum=-0.111;SNPEFF_AMINO_ACID_CHANGE=P189T;SNPEFF_CODON_CHANGE=Cct/Act;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:55,28:83:99:503,0,1693
X    140993852    rs176038    C    G    843.86    PASS    AB=0.624;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.25;DB;DP=101;Dels=0.0;FS=9.577;HRun=0;HaplotypeScore=0.9983;MQ=45.7;MQ0=1;MQRankSum=-0.419;QD=8.36;ReadPosRankSum=-1.404;SNPEFF_AMINO_ACID_CHANGE=T221S;SNPEFF_CODON_CHANGE=aCt/aGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:63,38:101:99:874,0,1772
X    140993859    rs6634333    T    A    647.10    PASS    AB=0.637;AC=1;AF=0.50;AN=2;BaseQRankSum=5.171;DB;DP=91;Dels=0.0;FS=17.878;HRun=1;HaplotypeScore=0.9983;MQ=45.12;MQ0=1;MQRankSum=-2.439;QD=7.11;ReadPosRankSum=-0.802;SNPEFF_AMINO_ACID_CHANGE=S223R;SNPEFF_CODON_CHANGE=agT/agA;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:58,33:91:99:677,0,1578
X    140993864    rs34836042    T    C    544.68    PASS    AB=0.643;AC=1;AF=0.50;AN=2;BaseQRankSum=0.765;DB;DP=84;Dels=0.0;FS=17.509;HRun=0;HaplotypeScore=1.787;MQ=44.92;MQ0=1;MQRankSum=-2.517;QD=6.48;ReadPosRankSum=-0.486;SNPEFF_AMINO_ACID_CHANGE=F225S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:54,30:84:99:575,0,1550
X    140993877    rs176039    C    A    506.03    PASS    AB=0.609;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.601;DB;DP=69;Dels=0.0;FS=23.851;HRun=0;HaplotypeScore=0.5784;MQ=44.33;MQ0=1;MQRankSum=-1.898;QD=7.33;ReadPosRankSum=0.262;SNPEFF_AMINO_ACID_CHANGE=A229;SNPEFF_CODON_CHANGE=gcC/gcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:42,27:69:99:536,0,1256
X    140993886    rs113166002    T    A    945.37    PASS    AB=0.417;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.526;DB;DP=60;Dels=0.0;FS=34.799;HRun=0;HaplotypeScore=1.5253;MQ=44.99;MQ0=1;MQRankSum=2.753;QD=15.76;ReadPosRankSum=-0.775;SNPEFF_AMINO_ACID_CHANGE=P232;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:25,35:60:99:975,0,505
X    140993905    rs176040    C    T    202.85    SnpCluster    AB=0.514;AC=1;AF=0.50;AN=2;BaseQRankSum=0.069;DB;DP=36;Dels=0.0;FS=27.893;HRun=0;HaplotypeScore=1.5757;MQ=42.99;MQ0=1;MQRankSum=-3.203;QD=5.63;ReadPosRankSum=1.963;SNPEFF_AMINO_ACID_CHANGE=P239S;SNPEFF_CODON_CHANGE=Ccc/Tcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:18,17:36:99:233,0,541
X    140993912    rs12558365    C    T    260.42    SnpCluster    AB=0.483;AC=1;AF=0.50;AN=2;BaseQRankSum=2.045;DB;DP=29;Dels=0.0;FS=25.592;HRun=1;HaplotypeScore=0.5784;MQ=40.33;MQ0=1;MQRankSum=3.147;QD=8.98;ReadPosRankSum=-2.78;SNPEFF_AMINO_ACID_CHANGE=S241F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:14,15:29:99:290,0,251
X    140993913    rs176041    C    G    220.91    MQFilter40;SnpCluster    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.68;DB;DP=26;Dels=0.0;FS=21.239;HRun=0;HaplotypeScore=0.5784;MQ=39.21;MQ0=1;MQRankSum=-2.584;QD=8.5;ReadPosRankSum=2.801;SNPEFF_AMINO_ACID_CHANGE=S241;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:13,13:26:99:251,0,298
X    140993926    rs76335605    C    G    49.62    MQFilter40    AB=0.647;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.462;DB;DP=17;Dels=0.0;FS=33.015;HRun=0;HaplotypeScore=0.0;MQ=33.9;MQ0=0;MQRankSum=0.653;QD=2.92;ReadPosRankSum=-2.06;SNPEFF_AMINO_ACID_CHANGE=L246V;SNPEFF_CODON_CHANGE=Ctg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:11,6:17:79.61:80,0,239
X    140993945    rs145765891    T    C    119.08    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=29.64;MQ0=0;QD=13.23;SNPEFF_AMINO_ACID_CHANGE=F252S;SNPEFF_CODON_CHANGE=tTc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:0,9:9:15.03:152,15,0
X    140993947    rs148942485    T    C    140.61    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=27.83;MQ0=0;QD=12.78;SNPEFF_AMINO_ACID_CHANGE=S253P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:0,11:11:18.01:173,18,0
X    140993989    rs77648555    T    C    710.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.44;MQ0=1;QD=20.91;SNPEFF_AMINO_ACID_CHANGE=S267P;SNPEFF_CODON_CHANGE=Tct/Cct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:0,34:34:63.18:744,63,0
X    140993991    rs146036055    T    A    764.91    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.796;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=42.36;MQ0=1;MQRankSum=1.545;QD=19.61;ReadPosRankSum=1.264;SNPEFF_AMINO_ACID_CHANGE=S267;SNPEFF_CODON_CHANGE=tcT/tcA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:1,38:39:66.19:798,66,0
X    140994037    rs176045    C    A    1367.03    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DB;DP=61;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8616;MQ=43.19;MQ0=2;MQRankSum=3.626;QD=22.41;ReadPosRankSum=1.283;SNPEFF_AMINO_ACID_CHANGE=L283I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:11,50:61:6.17:1398,6,0
X    140994095    rs112191471    C    T    180.82    HaplotypeScoreFilter13;MQFilter40    AB=0.8;AC=1;AF=0.50;AN=2;BaseQRankSum=2.207;DB;DP=45;Dels=0.0;FS=6.313;HRun=1;HaplotypeScore=25.9807;MQ=34.0;MQ0=2;MQRankSum=4.077;QD=4.02;ReadPosRankSum=-2.268;SNPEFF_AMINO_ACID_CHANGE=P103L;SNPEFF_CODON_CHANGE=cCt/cTt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993881_140994138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370510    GT:AD:DP:GQ:PL    0/1:36,9:45:99:211,0,456
X    140994096    rs78546154    T    A    110.79    HaplotypeScoreFilter13;MQFilter40    AB=0.556;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.859;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=26.9472;MQ=34.0;MQ0=2;MQRankSum=-3.69;QD=2.46;ReadPosRankSum=3.917;SNPEFF_AMINO_ACID_CHANGE=P103;SNPEFF_CODON_CHANGE=ccT/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993881_140994138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370510    GT:AD:DP:GQ:PL    0/1:25,20:45:99:141,0,530
X    140994122    rs1055491    C    T    38.56    MQFilter40;QDFilter2    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.599;DB;DP=34;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=2.6823;MQ=22.4;MQ0=5;MQRankSum=-2.441;QD=1.13;ReadPosRankSum=-0.921;SNPEFF_AMINO_ACID_CHANGE=S112F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993881_140994138;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370510    GT:AD:DP:GQ:PL    0/1:18,16:34:68.56:69,0,236
X    140994123    rs77196611    C    G    213.47    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.466;DB;DP=35;Dels=0.0;FS=6.154;HRun=0;HaplotypeScore=2.6823;MQ=24.09;MQ0=5;MQRankSum=1.375;QD=6.1;ReadPosRankSum=1.637;SNPEFF_AMINO_ACID_CHANGE=S112;SNPEFF_CODON_CHANGE=tcC/tcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993881_140994138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370510    GT:AD:DP:GQ:PL    0/1:17,17:35:99:243,0,115
X    140994136    rs78484597    T    C    219.07    MQFilter40    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=1.026;DB;DP=42;Dels=0.0;FS=7.782;HRun=0;HaplotypeScore=3.8591;MQ=34.7;MQ0=4;MQRankSum=2.025;QD=5.22;ReadPosRankSum=3.411;SNPEFF_AMINO_ACID_CHANGE=L117;SNPEFF_CODON_CHANGE=Ttg/Ctg;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993881_140994138;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370510    GT:AD:DP:GQ:PL    0/1:11,17:42:47.86:249,0,48
X    140994142    rs111809877    C    A    598.78    MQFilter40    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.631;DB;DP=48;Dels=0.0;FS=6.805;HRun=0;HaplotypeScore=3.8591;MQ=39.73;MQ0=4;MQRankSum=2.026;QD=12.47;ReadPosRankSum=-4.447;SNPEFF_AMINO_ACID_CHANGE=L318I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    0/1:18,30:48:99:629,0,205
X    140994171    rs176047    C    G    1808.54    PASS    AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.18;MQ0=4;QD=30.14;SNPEFF_AMINO_ACID_CHANGE=H327Q;SNPEFF_CODON_CHANGE=caC/caG;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:0,60:60:99:1842,138,0
X    140994407    rs62611965    C    G    2639.48    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.018;DB;DP=86;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8908;MQ=57.67;MQ0=0;MQRankSum=3.728;QD=30.69;ReadPosRankSum=-0.554;SNPEFF_AMINO_ACID_CHANGE=S406C;SNPEFF_CODON_CHANGE=tCt/tGt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:5,81:86:99:2672,179,0
X    140994419    rs138268726    T    C    2800.60    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.152;DB;DP=88;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=57.76;MQ0=0;MQRankSum=3.354;QD=31.82;ReadPosRankSum=0.557;SNPEFF_AMINO_ACID_CHANGE=I410T;SNPEFF_CODON_CHANGE=aTt/aCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:5,83:88:99:2834,191,0
X    140994517    rs62611966    C    G    2831.36    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9999;MQ=59.38;MQ0=0;QD=37.75;SNPEFF_AMINO_ACID_CHANGE=L443V;SNPEFF_CODON_CHANGE=Ctc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2864,214,0
X    140995315    rs56256227    C    T    2217.25    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.76;SNPEFF_AMINO_ACID_CHANGE=H709Y;SNPEFF_CODON_CHANGE=Cat/Tat;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_140993195_140997174;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285879    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2250,166,0
X    140996672    rs41300301    C    T    333.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=30.35;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370510    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:367,27,0
X    141290865    rs3765272    C    T    1930.86    PASS    AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.56;MQ0=0;QD=36.43;SNPEFF_AMINO_ACID_CHANGE=P303;SNPEFF_CODON_CHANGE=ccG/ccA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_141290131_141291839;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEC2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247452    GT:AD:DP:GQ:PL    1/1:0,53:53:99:1964,144,0
X    142121729    rs4825148    T    C    560.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370504    GT:AD:DP:GQ:PL    1/1:0,15:15:45.14:594,45,0
X    142122058    rs62601929    T    G    367.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=33.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370504    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:401,30,0
X    142122140    rs35294720    A    C    132.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000446864    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:165,12,0
X    142596406    rs2076790    T    C    228.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.52;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370503    GT:AD:DP:GQ:PL    1/1:0,8:8:21.07:261,21,0
X    142596503    rs113326606    TCTTCC    T    291.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=0;HaplotypeScore=43.3039;IndelType=D;MQ=61.34;MQ0=0;QD=41.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370503    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:334,18,0
X    142596941    rs6654212    C    G    1148    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.34;MQ0=0;QD=32.8;SNPEFF_AMINO_ACID_CHANGE=K43N;SNPEFF_CODON_CHANGE=aaG/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_142596564_142596991;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370503    GT:AD:DP:GQ:PL    1/1:0,35:35:87.28:1181,87,0
X    142605005    rs5908678    G    A    173.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.85;MQ0=0;QD=34.77;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370503    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:207,15,0
X    142605455    rs111877285    C    T    44.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.16;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370503    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
X    142967000    rs237519    T    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2NL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370494    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
X    142967468    rs237520    T    G    1570.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.89;SNPEFF_AMINO_ACID_CHANGE=L89*;SNPEFF_CODON_CHANGE=tTa/tGa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_X_142967173_142968355;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=UBE2NL;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000370494    GT:AD:DP:GQ:PL    1/1:1,44:45:99:1603,120,0
X    144329318    rs184391977    C    T    170.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.07;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPANXN1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370493    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:203,15,0
X    144904882    rs2748588    T    C    1098.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=59.32;MQ0=0;QD=32.32;SNPEFF_AMINO_ACID_CHANGE=P313;SNPEFF_CODON_CHANGE=ccT/ccC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_144903901_144906115;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SLITRK2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000335565    GT:AD:DP:GQ:PL    1/1:0,34:34:87.28:1132,87,0
X    145076302    rs5965660    T    G    413.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.6;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR892A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401124    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:447,33,0
X    145077931    rs111395216    G    T    43.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.08;MQ0=0;QD=21.51;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR891B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:74,6,0
X    145082372    rs5919986    C    T    52.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.2;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR891B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000401245    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:84,6,0
X    146340534    rs2504174    C    T    704.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=49.57;MQ0=0;QD=33.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR509-1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385265    GT:AD:DP:GQ:PL    1/1:0,21:21:57.16:737,57,0
X    146366330    rs146054459    C    T    59.64    MQFilter40    AB=0.444;AC=1;AF=0.50;AN=2;BaseQRankSum=1.307;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=23.0;MQ0=0;MQRankSum=-0.361;QD=6.63;ReadPosRankSum=1.307;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=miRNA;SNPEFF_GENE_NAME=MIR514-2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000385131    GT:AD:DP:GQ:PL    0/1:4,5:9:61.97:90,0,62
X    147003564    rs1270092    T    C    214.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218200    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:247,18,0
X    147010263    .    A    C    31.66    QDFilter2    AB=0.475;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.088;DP=59;Dels=0.0;FS=43.757;HRun=2;HaplotypeScore=1.5774;MQ=56.97;MQ0=0;MQRankSum=-1.094;QD=0.54;ReadPosRankSum=0.966;SNPEFF_AMINO_ACID_CHANGE=K119N;SNPEFF_CODON_CHANGE=aaA/aaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_147010177_147010325;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMR1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218200    GT:AD:DP:GQ:PL    0/1:28,31:59:61.65:62,0,946
X    147014960    rs4824232    C    T    321.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.79;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_X_147014920_147015059;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000440235    GT:AD:DP:GQ:PL    1/1:0,12:12:27.09:354,27,0
X    147015021    rs4824233    C    T    163.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.71;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000495717    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:196,15,0
X    147026266    rs5904816    G    T    154.24    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=64.19;MQ0=0;QD=30.85;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475038    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:187,15,0
X    147026330    rs68020458    AC    A    367.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.0;HRun=3;HaplotypeScore=44.6376;IndelType=D;MQ=61.82;MQ0=0;QD=33.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000475038    GT:AD:DP:GQ:PL    1/1:0,11:11:33.10:409,33,0
X    147106677    rs215110    C    A    150.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FMR1NB;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370467    GT:AD:DP:GQ:PL    1/1:0,5:5:15.02:183,15,0
X    147733265    rs5904246    G    GA    587.88    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.0;HRun=1;HaplotypeScore=28.173;IndelType=I;MQ=58.45;MQ0=0;QD=39.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000342251    GT:AD:DP:GQ:PL    1/1:1,14:15:42.14:630,42,0
X    147891222    .    G    A    51.75    PASS    AC=2;AF=1.00;AN=2;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    147891558    rs11117555    T    C    188.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:0,8:8:18.04:221,18,0
X    147919063    rs67293111    CAGTTA    C    256.11    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=0;HaplotypeScore=30.5324;IndelType=D;MQ=49.96;MQ0=0;QD=51.22;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:298,15,0
X    148036943    rs185047690    A    G    172.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:206,15,0
X    148037055    rs16994868    G    C    1180.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.42;MQ0=0;QD=36.88;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:0,32:32:90.28:1213,90,0
X    148048207    rs111499310    CTT    C    845.15    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=-2.278;DB;DP=58;FS=0.0;HRun=15;HaplotypeScore=313.9077;IndelType=D;MQ=57.96;MQ0=0;MQRankSum=1.182;QD=14.57;ReadPosRankSum=-0.375;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:8,44:58:56.79:887,57,0
X    148055144    rs5980615    A    G    534.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=38.21;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:568,42,0
X    148055378    rs2108982    G    A    44.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.44;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
X    148062377    rs12688573    G    A    867.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.25;MQ0=0;QD=34.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AFF2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000286437    GT:AD:DP:GQ:PL    1/1:0,25:25:66.22:900,66,0
X    148393642    rs193203623    T    C    45.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.57;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
X    148393846    rs143943811    C    A    634.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.74;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,20:20:51.15:668,51,0
X    148568272    rs2075546    A    G    39.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=19.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370441    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:71,6,0
X    148568291    rs725679    T    C    163.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.29;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370441    GT:AD:DP:GQ:PL    1/1:0,6:6:18.02:197,18,0
X    148582350    rs139515077    CATT    C    265.23    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.0;HRun=0;HaplotypeScore=25.3511;IndelType=D;MQ=51.77;MQ0=0;QD=44.21;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDS;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428056    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:307,18,0
X    148582549    rs1141608    G    A    1170.60    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.5784;MQ=58.11;MQ0=0;QD=31.64;SNPEFF_AMINO_ACID_CHANGE=T146;SNPEFF_CODON_CHANGE=acC/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_148582480_148582568;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDS;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000340855    GT:AD:DP:GQ:PL    1/1:1,36:37:90.25:1204,90,0
X    148627384    rs145921071    A    G    352.76    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=20.53;MQ0=9;QD=13.07;SNPEFF_AMINO_ACID_CHANGE=T70A;SNPEFF_CODON_CHANGE=Acc/Gcc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_148627024_148627429;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf40A;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359293    GT:AD:DP:GQ:PL    1/1:0,27:27:36.07:386,36,0
X    148628490    rs12116111    A    T    208.31    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=24.29;MQ0=7;QD=12.25;SNPEFF_AMINO_ACID_CHANGE=P153;SNPEFF_CODON_CHANGE=ccA/ccT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_148628285_148628852;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CXorf40A;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000359293    GT:AD:DP:GQ:PL    1/1:0,17:17:21.06:241,21,0
X    148690206    rs471136    C    T    516.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.5;MQ0=0;QD=34.44;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM185A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000511776    GT:AD:DP:GQ:PL    1/1:0,15:15:42.13:550,42,0
X    148693164    rs9887071    C    T    2191.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=58.88;MQ0=0;QD=35.35;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=TMEM185A;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000316916    GT:AD:DP:GQ:PL    1/1:0,62:62:99:2224,166,0
X    149013727    rs5983916    A    G    1451.77    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.26;SNPEFF_AMINO_ACID_CHANGE=A227;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_149012984_149014608;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA8;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000286482    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1485,123,0
X    149641802    rs6526082    A    G    63.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAMLD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000358892    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:96,9,0
X    149887330    rs528861    C    T    43.95    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=14.65;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370390    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:75,6,0
X    149931106    rs16995747    C    T    918.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.49;MQ0=0;QD=28.7;SNPEFF_AMINO_ACID_CHANGE=G540;SNPEFF_CODON_CHANGE=ggC/ggT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_149931038_149931380;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MTMR1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000541925    GT:AD:DP:GQ:PL    1/1:0,32:32:75.21:951,75,0
X    149999696    rs17319111    C    T    2462.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.74;MQ0=0;QD=33.28;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CD99L2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000320893    GT:AD:DP:GQ:PL    1/1:0,73:73:99:2495,184,0
X    150348228    rs1202874    C    T    5612    PASS    AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=1.6006;MQ=59.33;MQ0=0;QD=35.08;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR50;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218316    GT:AD:DP:GQ:PL    1/1:0,160:160:99:5612,412,0
X    150349871    rs13440581    A    G    1491    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DB;DP=42;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=0.248;QD=35.5;ReadPosRankSum=-0.743;SNPEFF_AMINO_ACID_CHANGE=I606V;SNPEFF_CODON_CHANGE=Att/Gtt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_150348243_150349937;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GPR50;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000218316    GT:AD:DP:GQ:PL    1/1:1,41:42:82.58:1524,83,0
X    150565330    rs176451    G    C    163.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9997;MQ=60.0;MQ0=0;QD=23.32;SNPEFF_AMINO_ACID_CHANGE=G7R;SNPEFF_CODON_CHANGE=Ggc/Cgc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_150565271_150565529;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=VMA21;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370361    GT:AD:DP:GQ:PL    1/1:0,6:7:15.05:196,15,0
X    150789334    rs5904324    T    TA    1052.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.0;HRun=6;HaplotypeScore=55.0964;IndelType=I;MQ=60.37;MQ0=0;QD=36.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370357    GT:AD:DP:GQ:PL    1/1:0,29:29:87.28:1095,87,0
X    150789950    rs945815    C    T    463.28    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.64;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370357    GT:AD:DP:GQ:PL    1/1:0,13:13:36.12:496,36,0
X    150816952    rs12845316    A    G    656.49    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.82;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PASD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370357    GT:AD:DP:GQ:PL    1/1:0,20:20:54.17:689,54,0
X    150867321    rs5925008    C    T    405.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRG3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370353    GT:AD:DP:GQ:PL    1/1:0,12:12:33.10:438,33,0
X    150869267    rs4323608    A    G    562.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.16;SNPEFF_AMINO_ACID_CHANGE=N153S;SNPEFF_CODON_CHANGE=aAc/aGc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_150868978_150874396;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PRRG3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370353    GT:AD:DP:GQ:PL    1/1:0,16:16:45.14:596,45,0
X    150885576    rs3810714    C    T    901.14    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.99;MQ0=0;QD=39.18;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370350    GT:AD:DP:GQ:PL    1/1:0,23:23:69.23:934,69,0
X    150889857    rs72612761    C    T    660.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=58.84;MQ0=0;QD=33.03;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=FATE1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370350    GT:AD:DP:GQ:PL    1/1:0,20:20:57.17:694,57,0
X    150907240    rs7066992    T    C    216.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.99;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CNGA2;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000329903    GT:AD:DP:GQ:PL    1/1:0,7:7:21.04:250,21,0
X    151092126    rs1047246    C    G    1359.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.83;MQ0=0;QD=37.78;SNPEFF_EFFECT=START_GAINED;SNPEFF_EXON_ID=exon_X_151092072_151093642;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276344    GT:AD:DP:GQ:PL    1/1:0,36:36:99:1393,102,0
X    151092220    rs1047248    A    G    1326.41    PASS    AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=33.16;SNPEFF_AMINO_ACID_CHANGE=A28;SNPEFF_CODON_CHANGE=gcA/gcG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_151092072_151093642;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000276344    GT:AD:DP:GQ:PL    1/1:0,40:40:99:1359,108,0
X    151092653    rs1047251    G    A    2031.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.734;MQ=60.0;MQ0=0;QD=32.24;SNPEFF_AMINO_ACID_CHANGE=A173T;SNPEFF_CODON_CHANGE=Gcc/Acc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_151092072_151093642;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA4;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000276344    GT:AD:DP:GQ:PL    1/1:0,63:63:99:2064,159,0
X    151124488    rs2269416    A    C    88.78    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.59;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393914    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:121,9,0
X    151128644    rs191073575    C    T    167.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.42;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474932    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:200,15,0
X    151283336    rs3565    T    C    1746.16    PASS    AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.75;MQ0=0;QD=33.58;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509345    GT:AD:DP:GQ:PL    1/1:0,52:52:99:1779,138,0
X    151283436    rs67540048    ATTATC    A    2944.32    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.0;HRun=0;HaplotypeScore=266.9586;IndelType=D;MQ=46.55;MQ0=0;QD=68.47;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000509345    GT:AD:DP:GQ:PL    1/1:0,43:43:99:2986,129,0
X    151283567    rs210575    A    T    2470.64    PASS    AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.7887;MQ=54.57;MQ0=0;QD=34.8;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427663    GT:AD:DP:GQ:PL    1/1:0,71:71:99:2504,193,0
X    151283599    rs210576    T    G    2046.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.86;MQ0=0;QD=29.65;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=MAGEA5;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000427663    GT:AD:DP:GQ:PL    1/1:0,69:69:99:2079,171,0
X    151303393    rs210586    C    T    1020.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.79;SNPEFF_AMINO_ACID_CHANGE=V234I;SNPEFF_CODON_CHANGE=Gtc/Atc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_151302910_151304157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244096    GT:AD:DP:GQ:PL    1/1:0,27:27:78.24:1053,78,0
X    151303596    rs210585    C    T    1393.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.0;FS=0.0;HRun=3;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.4;SNPEFF_AMINO_ACID_CHANGE=R166K;SNPEFF_CODON_CHANGE=aGa/aAa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_151302910_151304157;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000244096    GT:AD:DP:GQ:PL    1/1:0,43:43:99:1426,111,0
X    151817820    rs6627251    C    T    769.91    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.28;MQ0=0;QD=29.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333733    GT:AD:DP:GQ:PL    1/1:0,26:26:66.20:803,66,0
X    151818008    rs5924753    C    T    51.22    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRQ;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000333733    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
X    151821277    rs3810651    T    A    1587.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.07;SNPEFF_AMINO_ACID_CHANGE=F478I;SNPEFF_CODON_CHANGE=Ttt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_151821004_151825999;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=GABRQ;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370306    GT:AD:DP:GQ:PL    1/1:0,48:48:99:1620,123,0
X    151896029    rs2515827    A    G    314.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.9;MQ0=0;QD=34.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357916    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:348,27,0
X    151899760    rs2515830    A    G    508.79    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.33;MQ0=0;QD=36.34;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361211    GT:AD:DP:GQ:PL    1/1:0,14:14:39.13:542,39,0
X    151899789    rs3005    G    A    940.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.11;MQ0=0;QD=36.18;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361211    GT:AD:DP:GQ:PL    1/1:0,26:26:75.23:974,75,0
X    151899818    rs2233056    C    T    1358.02    PASS    AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.41;MQ0=0;QD=34.82;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361211    GT:AD:DP:GQ:PL    1/1:0,39:39:99:1391,108,0
X    151899913    rs2233055    T    C    2618.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=31.17;SNPEFF_AMINO_ACID_CHANGE=G296;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_151899293_151900875;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA12;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000357916    GT:AD:DP:GQ:PL    1/1:0,83:83:99:2651,202,0
X    151904488    rs2515838    C    A    1253.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.6;MQ0=0;QD=33.87;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MAGEA12;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000357916    GT:AD:DP:GQ:PL    1/1:0,37:37:96.31:1286,96,0
X    151904609    rs2471781    T    C    192.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.73;MQ0=0;QD=27.51;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CSAG1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370287    GT:AD:DP:GQ:PL    1/1:0,7:7:18.04:225,18,0
X    152018832    rs5969919    T    G    2310.50    PASS    AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=1.841;MQ=59.69;MQ0=0;QD=30.81;SNPEFF_AMINO_ACID_CHANGE=G44;SNPEFF_CODON_CHANGE=ggT/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_152018809_152018967;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSDHL;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370274    GT:AD:DP:GQ:PL    1/1:0,75:75:99:2344,190,0
X    152019097    rs184194505    A    G    645.69    PASS    AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.75;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=NSDHL;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370274    GT:AD:DP:GQ:PL    1/1:0,21:21:51.17:679,51,0
X    152089039    rs2071258    G    A    292.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.59;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF185;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318504    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:326,24,0
X    152091153    rs2071261    A    C    92.19    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=23.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ZNF185;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000318504    GT:AD:DP:GQ:PL    1/1:0,3:4:9.03:124,9,0
X    152225999    .    T    G    78.98    QDFilter2    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.715;DP=42;Dels=0.0;FS=39.124;HRun=2;HaplotypeScore=5.7955;MQ=54.25;MQ0=0;MQRankSum=-3.272;QD=1.88;ReadPosRankSum=0.587;SNPEFF_AMINO_ACID_CHANGE=V196G;SNPEFF_CODON_CHANGE=gTg/gGg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_152225387_152227632;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNMA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000370264    GT:AD:DP:GQ:PL    0/1:26,16:42:99:109,0,867
X    152728003    rs3020967    T    C    348.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370210    GT:AD:DP:GQ:PL    1/1:0,11:11:27.09:382,27,0
X    152751332    rs116117083    G    C    50.63    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.32;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HAUS7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370210    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:82,6,0
X    152770402    rs2980053    A    G    354.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=4;HaplotypeScore=0.0;MQ=57.87;MQ0=0;QD=32.19;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331595    GT:AD:DP:GQ:PL    1/1:0,10:11:30.10:387,30,0
X    152772758    rs2269404    T    C    140.26    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9665;MQ=60.0;MQ0=0;QD=23.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431891    GT:AD:DP:GQ:PL    1/1:0,6:6:15.04:173,15,0
X    152773615    rs5945215    G    T    786.04    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=58.95;MQ0=0;QD=35.73;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431891    GT:AD:DP:GQ:PL    1/1:0,22:22:66.17:819,66,0
X    152774031    rs1042103    G    A    91.07    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=30.36;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=BGN;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000431891    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:123,9,0
X    152807425    rs762733    G    A    432.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.52;MQ0=0;QD=27.05;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,16:16:36.10:466,36,0
X    152807665    rs2980012    A    G    220.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.56;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,7:7:21.05:254,21,0
X    152807923    rs2980013    G    C    325.73    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.14;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:359,30,0
X    152815089    rs3020949    A    G    1432.97    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.84;SNPEFF_AMINO_ACID_CHANGE=G477;SNPEFF_CODON_CHANGE=ggA/ggG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_152814955_152815197;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370181    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1466,114,0
X    152815886    rs2285035    C    T    156.85    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:190,15,0
X    152818435    rs2239682    G    A    358.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.21;MQ0=0;QD=35.89;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,10:10:30.10:392,30,0
X    152821887    rs3020957    C    T    92.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.01;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,4:4:9.03:124,9,0
X    152823728    rs2269415    G    C    1523.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.85;SNPEFF_AMINO_ACID_CHANGE=V850;SNPEFF_CODON_CHANGE=gtG/gtC;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_152823570_152823761;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370181    GT:AD:DP:GQ:PL    1/1:0,45:45:99:1556,114,0
X    152825414    rs3020959    G    T    401.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8667;MQ=60.0;MQ0=0;QD=26.74;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,15:15:33.11:434,33,0
X    152825433    rs2980018    A    G    283.40    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.43;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:316,24,0
X    152827445    rs2980021    A    G    230.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.05;MQ0=0;QD=19.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460549    GT:AD:DP:GQ:PL    1/1:0,12:12:24.06:264,24,0
X    152830322    rs4243536    A    G    59.59    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=14.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000460549    GT:AD:DP:GQ:PL    1/1:0,4:4:9.02:92,9,0
X    152834736    rs6643626    T    C    1189.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=59.51;MQ0=0;QD=31.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,38:38:90.29:1223,90,0
X    152834891    rs6643736    G    C    282.27    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.36;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP2B3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000263519    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:315,24,0
X    152908887    rs1894299    G    A    397.29    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=DUSP9;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000370167    GT:AD:DP:GQ:PL    1/1:0,14:14:33.10:430,33,0
X    152935705    rs5945339    C    A    48.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000411968    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:79,6,0
X    152954025    rs384573    A    G    44.66    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.33;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PNCK;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000458354    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:76,6,0
X    153008911    rs4898368    C    T    246.84    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.26;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ABCD1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000218104    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:280,21,0
X    153036884    rs2266880    C    T    266.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.31;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361971    GT:AD:DP:GQ:PL    1/1:0,8:8:24.06:299,24,0
X    153037172    rs6643790    G    A    45.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=15.25;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361971    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:77,6,0
X    153037275    rs6643644    C    T    113.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=28.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000361971    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:146,12,0
X    153037594    rs11156607    C    G    393.39    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.7;MQ0=0;QD=17.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538543    GT:AD:DP:GQ:PL    1/1:0,23:23:33.10:426,33,0
X    153037779    rs2266881    G    A    596    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=56.25;MQ0=0;QD=31.37;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538543    GT:AD:DP:GQ:PL    1/1:0,19:19:48.15:629,48,0
X    153038516    rs5945161    C    G    51.75    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.87;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538543    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:83,6,0
X    153038661    rs2266885    G    C    292.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=32.45;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538543    GT:AD:DP:GQ:PL    1/1:0,9:9:24.08:325,24,0
X    153039502    rs6643791    G    C    134.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.8;SNPEFF_AMINO_ACID_CHANGE=E1156D;SNPEFF_CODON_CHANGE=gaG/gaC;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153039314_153039553;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000361971    GT:AD:DP:GQ:PL    1/1:0,8:8:15.04:167,15,0
X    153039615    rs1543781    A    G    49.83    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=51.77;MQ0=0;QD=16.61;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNB3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000538543    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:81,6,0
X    153047809    rs1981439    A    G    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=53.95;MQ0=0;QD=12.5;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217901    GT:AD:DP:GQ:PL    1/1:0,4:4:6.02:81,6,0
X    153048403    rs916001    T    C    420.34    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.02;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217901    GT:AD:DP:GQ:PL    1/1:0,15:15:36.10:453,36,0
X    153049389    rs3969088    A    G    302.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=33.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217901    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:335,27,0
X    153049391    rs7052332    A    G    306.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=57.39;MQ0=0;QD=34.06;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217901    GT:AD:DP:GQ:PL    1/1:0,9:9:27.08:339,27,0
X    153049535    rs4898444    A    G    509.90    PASS    AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.8941;MQ=57.23;MQ0=0;QD=29.99;SNPEFF_AMINO_ACID_CHANGE=P337;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153049429_153049668;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SRPK3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000370104    GT:AD:DP:GQ:PL    1/1:0,17:17:45.12:543,45,0
X    153050047    rs5945164    C    G    174.61    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217901    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:207,15,0
X    153050984    rs1802092    G    A    690.64    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.8897;MQ=58.95;MQ0=0;MQRankSum=1.576;QD=31.39;ReadPosRankSum=1.261;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000217901    GT:AD:DP:GQ:PL    1/1:1,21:22:54.17:724,54,0
X    153051907    rs2071122    G    A    46.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=23.19;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000444338    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:78,6,0
X    153052649    rs2071123    C    A    287.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.9159;MQ=60.0;MQ0=0;QD=35.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461215    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:321,24,0
X    153052661    rs2269482    A    G    231.82    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.98;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461215    GT:AD:DP:GQ:PL    1/1:0,8:8:21.06:265,21,0
X    153053698    rs75047227    T    TG    542.94    PASS    AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.0;HRun=1;HaplotypeScore=29.8336;IndelType=I;MQ=59.9;MQ0=0;QD=41.76;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IDH3G;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000461215    GT:AD:DP:GQ:PL    1/1:0,13:13:39.13:585,39,0
X    153061775    rs2239714    A    G    257.05    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.56;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SSR4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000489777    GT:AD:DP:GQ:PL    1/1:0,9:9:24.07:290,24,0
X    153062772    rs5945165    T    C    124.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.01;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164640    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:157,12,0
X    153072107    rs3747309    T    C    332.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=36.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000468491    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:365,27,0
X    153073752    rs3761532    T    C    209.08    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=57.28;MQ0=0;QD=29.87;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PDZD4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000164640    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:242,18,0
X    153129556    rs2071127    G    A    162.96    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=27.16;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L1CAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474853    GT:AD:DP:GQ:PL    1/1:0,6:6:15.05:196,15,0
X    153134521    rs78371277    G    C    49.09    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=24.55;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=L1CAM;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000407935    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:80,6,0
X    153149708    rs77883713    G    GC    342.06    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.0;HRun=1;HaplotypeScore=52.5668;IndelType=I;MQ=60.0;MQ0=0;QD=42.76;SNPEFF_EFFECT=FRAME_SHIFT;SNPEFF_EXON_ID=exon_X_153149403_153149727;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U52112.12;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000357566    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:384,24,0
X    153149715    rs6643650    C    G    181.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=22.69;SNPEFF_AMINO_ACID_CHANGE=P14A;SNPEFF_CODON_CHANGE=Cct/Gct;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153149403_153149727;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=U52112.12;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000357566    GT:AD:DP:GQ:PL    1/1:0,8:8:15.05:214,15,0
X    153170447    rs55712963    G    GC    245.74    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=2;HaplotypeScore=20.0115;IndelType=I;MQ=60.0;MQ0=0;QD=35.11;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000350060    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:288,18,0
X    153174867    rs11405331    T    TG    174.38    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.0;HRun=2;HaplotypeScore=17.1602;IndelType=I;MQ=55.21;MQ0=0;QD=34.88;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000422918    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:216,15,0
X    153176284    rs62620965    C    T    43.76    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=21.88;SNPEFF_AMINO_ACID_CHANGE=E384;SNPEFF_CODON_CHANGE=gaG/gaA;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153176154_153176288;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ARHGAP4;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393721    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:75,6,0
X    153208197    rs11372702    T    TG    209.92    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.0;HRun=3;HaplotypeScore=20.1943;IndelType=I;MQ=59.81;MQ0=0;QD=29.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=HCFC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000310441    GT:AD:DP:GQ:PL    1/1:1,6:7:18.06:252,18,0
X    153277507    rs731642    A    G    93.72    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.24;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467236    GT:AD:DP:GQ:PL    1/1:0,3:3:9.03:126,9,0
X    153277889    rs2239673    C    T    50.47    PASS    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=16.82;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000467236    GT:AD:DP:GQ:PL    1/1:0,3:3:6.02:82,6,0
X    153278829    rs1059703    G    A    658.42    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.93;SNPEFF_AMINO_ACID_CHANGE=S453L;SNPEFF_CODON_CHANGE=tCg/tTg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153278494_153278884;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369974    GT:AD:DP:GQ:PL    1/1:0,22:22:51.17:691,51,0
X    153279858    rs5945174    G    A    41.51    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=10.38;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463031    GT:AD:DP:GQ:PL    1/1:0,3:4:6.02:73,6,0
X    153284192    rs1059702    A    G    794.62    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.03;MQ0=0;QD=33.11;SNPEFF_AMINO_ACID_CHANGE=F196S;SNPEFF_CODON_CHANGE=tTt/tCt;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153284050_153284238;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369974    GT:AD:DP:GQ:PL    1/1:0,24:24:63.20:828,63,0
X    153284483    rs1059701    G    A    241.48    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.5;SNPEFF_AMINO_ACID_CHANGE=V157;SNPEFF_CODON_CHANGE=gtC/gtT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153284426_153284529;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IRAK1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000444230    GT:AD:DP:GQ:PL    1/1:0,7:7:21.07:274,21,0
X    153416537    rs78751796    A    C    351.31    PASS    AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=55.75;MQ0=0;QD=31.94;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=OPN1LW;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369951    GT:AD:DP:GQ:PL    1/1:0,11:11:30.10:384,30,0
X    153594077    rs12556583    G    C    49.99    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=25.0;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=nonsense_mediated_decay;SNPEFF_GENE_NAME=FLNA;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000344736    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:81,6,0
X    153629155    rs12012747    A    G    951.37    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9665;MQ=25.22;MQ0=18;QD=19.42;SNPEFF_AMINO_ACID_CHANGE=I148V;SNPEFF_CODON_CHANGE=Atc/Gtc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153629043_153629258;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=retained_intron;SNPEFF_GENE_NAME=RPL10;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000458500    GT:AD:DP:GQ:PL    1/1:15,34:49:84.23:984,84,0
X    153633359    rs1130929    G    C    370.53    PASS    AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.55;MQ0=0;QD=23.16;SNPEFF_AMINO_ACID_CHANGE=P67;SNPEFF_CODON_CHANGE=ccC/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153633336_153633424;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000014935    GT:AD:DP:GQ:PL    1/1:1,15:16:33.10:404,33,0
X    153633533    rs28602900    G    A    206.56    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000432135    GT:AD:DP:GQ:PL    1/1:0,6:6:18.06:239,18,0
X    153633953    rs1050094    T    C    42.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=47.12;MQ0=0;QD=21.1;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488225    GT:AD:DP:GQ:PL    1/1:0,2:2:6.02:73,6,0
X    153637305    rs2070807    T    C    133.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.43;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DNASE1L1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000488225    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:166,12,0
X    153660041    rs11156577    C    T    1802.15    PASS    AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.54;MQ0=0;QD=36.04;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000439372    GT:AD:DP:GQ:PL    1/1:0,49:50:99:1835,144,0
X    153668172    rs68141802    A    G    687.70    PASS    AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=29.9;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=ATP6AP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369762    GT:AD:DP:GQ:PL    1/1:0,22:23:57.18:721,57,0
X    153689893    rs35285799    G    A    2936.81    PASS    AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9919;MQ=59.18;MQ0=0;QD=34.55;SNPEFF_AMINO_ACID_CHANGE=R350Q;SNPEFF_CODON_CHANGE=cGg/cAg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153689439_153689978;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=PLXNA3;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000369682    GT:AD:DP:GQ:PL    1/1:0,85:85:99:2970,223,0
X    153880830    rs4326559    A    C    915.67    PASS    AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=26.93;SNPEFF_AMINO_ACID_CHANGE=P115;SNPEFF_CODON_CHANGE=ccT/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153880246_153880905;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAG2;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000247306    GT:AD:DP:GQ:PL    1/1:0,34:34:84.18:949,84,0
X    153881525    rs17328091    G    C    773.35    PASS    AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8941;MQ=55.59;MQ0=0;QD=30.93;SNPEFF_AMINO_ACID_CHANGE=Q31E;SNPEFF_CODON_CHANGE=Cag/Gag;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153881521_153881588;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=CTAG2;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000454505    GT:AD:DP:GQ:PL    1/1:0,25:25:63.19:806,63,0
X    153994596    rs2728532    G    T    753.13    PASS    AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=57.66;MQ0=0;QD=37.66;SNPEFF_AMINO_ACID_CHANGE=T123;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_153994491_153994675;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369550    GT:AD:DP:GQ:PL    1/1:0,20:20:60.19:786,60,0
X    154004584    rs1127051    C    T    218.89    PASS    AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.27;SNPEFF_AMINO_ACID_CHANGE=A487;SNPEFF_CODON_CHANGE=gcC/gcT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_154004462_154004599;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKC1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000369550    GT:AD:DP:GQ:PL    1/1:0,7:7:18.06:252,18,0
X    154009315    rs2728728    G    C    127.80    PASS    AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.95;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DKC1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369550    GT:AD:DP:GQ:PL    1/1:0,4:4:12.04:160,12,0
X    154019083    rs2221730    T    C    503.57    PASS    AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.97;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000471821    GT:AD:DP:GQ:PL    1/1:0,14:14:42.14:537,42,0
X    154020114    rs1126762    C    A    660.10    PASS    AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=34.74;SNPEFF_AMINO_ACID_CHANGE=T39;SNPEFF_CODON_CHANGE=acG/acT;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_154020044_154020122;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP1;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000393529    GT:AD:DP:GQ:PL    1/1:0,19:19:51.15:693,51,0
X    154045229    rs5945246    G    A    633.03    PASS    AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=0.0;MQ=42.25;MQ0=2;QD=26.38;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=MPP1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000393529    GT:AD:DP:GQ:PL    1/1:0,24:24:57.15:666,57,0
X    154456747    rs572013    A    G    2299.20    PASS    AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.49;MQ0=0;QD=29.86;SNPEFF_AMINO_ACID_CHANGE=M118V;SNPEFF_CODON_CHANGE=Atg/Gtg;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_154456666_154456764;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VBP1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000535916    GT:AD:DP:GQ:PL    1/1:0,76:77:99:2332,178,0
X    154721357    rs150926226    G    C    67.61    MQFilter40    AB=0.2;AC=1;AF=0.50;AN=2;BaseQRankSum=0.727;DB;DP=5;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=34.93;MQ0=0;MQRankSum=0.727;QD=13.52;ReadPosRankSum=0.727;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMLHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000369439    GT:AD:DP:GQ:PL    0/1:1,4:5:25.76:98,0,26
X    154736968    rs5940458    T    G    116.21    PASS    AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=56.04;MQ0=0;QD=19.37;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMLHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000334398    GT:AD:DP:GQ:PL    1/1:0,6:6:12.04:149,12,0
X    154753903    rs5940465    A    G    159.93    PASS    AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.99;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMLHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000487422    GT:AD:DP:GQ:PL    1/1:0,5:5:15.05:193,15,0
X    154774663    rs2305517    G    A    335.71    PASS    AC=2;AF=1.00;AN=2;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.3;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMLHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474677    GT:AD:DP:GQ:PL    1/1:0,9:9:27.09:369,27,0
X    154774707    rs2305518    C    T    827.87    PASS    AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=37.63;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TMLHE;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000474677    GT:AD:DP:GQ:PL    1/1:0,22:22:63.21:861,63,0
X    155004280    rs146687281    A    G    2054.56    PASS    AB=0.516;AC=1;AF=0.50;AN=2;BaseQRankSum=1.856;DB;DP=157;Dels=0.0;FS=1.3;HRun=0;HaplotypeScore=2.7502;MQ=59.41;MQ0=0;MQRankSum=0.349;QD=13.09;ReadPosRankSum=-0.732;SNPEFF_AMINO_ACID_CHANGE=Q249;SNPEFF_CODON_CHANGE=caA/caG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_155003428_155012121;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRY3;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000302805    GT:AD:DP:GQ:PL    0/1:81,76:157:99:2085,0,2374
X    155004437    rs140356331    G    T    1729.12    PASS    AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=59.05;MQ0=0;QD=35.29;SNPEFF_EFFECT=UTR_3_PRIME;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=SPRY3;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000302805    GT:AD:DP:GQ:PL    1/1:0,49:49:99:1762,132,0
X    155125435    .    AG    A    441.75    PASS    AC=2;AF=1.00;AN=2;DP=14;FS=0.0;HRun=3;HaplotypeScore=41.1262;IndelType=D;MQ=60.77;MQ0=0;QD=31.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262640    GT:AD:DP:GQ:PL    1/1:1,13:14:39.12:484,39,0
X    155127675    rs148697490    A    G    222.82    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.908;DB;DP=21;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=58.89;MQ0=0;MQRankSum=-1.444;QD=10.61;ReadPosRankSum=-1.373;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000262640    GT:AD:DP:GQ:PL    0/1:11,10:21:99:253,0,396
X    155171537    rs143821247    G    C    870.22    PASS    AB=0.524;AC=1;AF=0.50;AN=2;BaseQRankSum=5.223;DB;DP=63;Dels=0.0;FS=4.244;HRun=1;HaplotypeScore=0.0;MQ=59.34;MQ0=0;MQRankSum=1.177;QD=13.81;ReadPosRankSum=-1.342;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=VAMP7;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000463317    GT:AD:DP:GQ:PL    0/1:33,30:63:99:900,0,930
X    155231280    .    T    TG    817.37    PASS    AC=2;AF=1.00;AN=2;DP=23;FS=0.0;HRun=2;HaplotypeScore=369.3182;IndelType=I;MQ=36.34;MQ0=0;QD=35.54;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL9R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244174    GT:AD:DP:GQ:PL    1/1:4,19:23:63.19:859,63,0
X    155231291    .    G    GGT    929.81    PASS    AC=2;AF=1.00;AN=2;DP=17;FS=0.0;HRun=0;HaplotypeScore=311.1037;IndelType=I;MQ=29.0;MQ0=0;QD=54.69;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL9R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244174    GT:AD:DP:GQ:PL    1/1:0,16:17:48.16:972,48,0
X    155231305    .    TA    T    347.75    PASS    AC=2;AF=1.00;AN=2;DP=11;FS=0.0;HRun=2;HaplotypeScore=249.2172;IndelType=D;MQ=29.0;MQ0=0;QD=31.61;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL9R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244174    GT:AD:DP:GQ:PL    1/1:1,10:11:30.10:390,30,0
X    155245016    .    A    G    48    MQFilter40    AC=2;AF=1.00;AN=2;DP=6;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.8;MQ0=1;QD=8.0;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL9R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000244174    GT:AD:DP:GQ:PL    1/1:0,6:6:9:80,9,0
X    155250536    .    C    T    285.61    MQFilter40    AC=2;AF=1.00;AN=2;DP=19;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=17.86;MQ0=5;QD=15.03;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL9R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483543    GT:AD:DP:GQ:PL    1/1:4,15:19:32.93:319,33,0
X    155251351    .    C    T    46.27    MQFilter40;QDFilter2    AB=0.872;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.359;DP=78;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=9.82;MQ0=59;MQRankSum=0.57;QD=0.59;ReadPosRankSum=-2.061;SNPEFF_AMINO_ACID_CHANGE=S65F;SNPEFF_CODON_CHANGE=tCc/tTc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_155251346_155251457;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH6P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359512    GT:AD:DP:GQ:PL    0/1:68,10:78:76.26:76,0,131
X    155251512    .    A    G    2577.59    MQFilter40    AC=2;AF=1.00;AN=2;DP=121;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=25.89;MQ0=12;QD=21.3;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH6P;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000285718    GT:AD:DP:GQ:PL    1/1:0,121:121:99:2611,270,0
X    155251698    .    G    A    175    MQFilter40    AC=2;AF=1.00;AN=2;DP=46;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=13.81;MQ0=23;QD=3.8;SNPEFF_AMINO_ACID_CHANGE=R112H;SNPEFF_CODON_CHANGE=cGc/cAc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_155251664_155251810;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH6P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000359512    GT:AD:DP:GQ:PL    1/1:15,27:46:21.02:208,21,0
X    155252736    .    A    G    591.31    MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-4.45;DP=118;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9578;MQ=12.46;MQ0=76;MQRankSum=5.038;QD=5.01;ReadPosRankSum=2.766;SNPEFF_AMINO_ACID_CHANGE=P229;SNPEFF_CODON_CHANGE=ccA/ccG;SNPEFF_EFFECT=SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_155252677_155252878;SNPEFF_FUNCTIONAL_CLASS=SILENT;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH6P;SNPEFF_IMPACT=LOW;SNPEFF_TRANSCRIPT_ID=ENST00000285718    GT:AD:DP:GQ:PL    1/1:71,47:118:63.10:624,63,0
X    155252758    .    A    G    629.23    MQFilter40    AC=2;AF=1.00;AN=2;DP=89;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=14.07;MQ0=61;QD=7.07;SNPEFF_AMINO_ACID_CHANGE=S237G;SNPEFF_CODON_CHANGE=Agc/Ggc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_X_155252677_155252878;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=WASH6P;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000285718    GT:AD:DP:GQ:PL    1/1:31,57:89:66.10:662,66,0
X    155252909    .    C    T    144.56    MQFilter40    AB=0.736;AC=1;AF=0.50;AN=2;BaseQRankSum=3.108;DP=53;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.8321;MQ=21.69;MQ0=20;MQRankSum=1.88;QD=2.73;ReadPosRankSum=-2.609;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL9R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483543    GT:AD:DP:GQ:PL    0/1:39,14:53:99:175,0,320
X    155254689    .    C    T    186.24    MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=0.428;DP=54;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.9966;MQ=13.5;MQ0=33;MQRankSum=-0.117;QD=3.45;ReadPosRankSum=1.285;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL9R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483543    GT:AD:DP:GQ:PL    0/1:27,27:54:46.97:216,0,47
X    155254781    .    G    A    948.56    MQFilter40    AB=0.354;AC=1;AF=0.50;AN=2;BaseQRankSum=0.112;DP=65;Dels=0.0;FS=11.103;HRun=0;HaplotypeScore=0.8941;MQ=32.69;MQ0=15;MQRankSum=0.335;QD=14.59;ReadPosRankSum=-1.129;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=IL9R;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000483543    GT:AD:DP:GQ:PL    0/1:23,42:65:99:979,0,151
Y    9368326    .    T    A    106.89    MQFilter40    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=0.244;DP=17;Dels=0.0;FS=3.424;HRun=0;HaplotypeScore=1.933;MQ=30.77;MQ0=5;MQRankSum=-0.244;QD=6.29;ReadPosRankSum=0.529;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=TSPY10;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000428845    GT:AD:DP:GQ:PL    0/1:9,8:17:99:137,0,207
Y    10011487    rs28642861    A    G    142.11    MQFilter40    AB=0.759;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.898;DB;DP=55;Dels=0.0;FS=5.2;HRun=0;HaplotypeScore=3.796;MQ=34.08;MQ0=4;MQRankSum=-1.121;QD=2.58;ReadPosRankSum=-0.122;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:41,13:55:99:172,0,894
Y    10011498    rs62608666    G    C    510.03    HaplotypeScoreFilter13;MQFilter40    AB=0.233;AC=1;AF=0.50;AN=2;BaseQRankSum=0.422;DB;DP=56;Dels=0.0;FS=11.769;HRun=0;HaplotypeScore=46.068;MQ=33.94;MQ0=4;MQRankSum=-4.701;QD=9.11;ReadPosRankSum=0.422;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:10,33:56:99:540,0,287
Y    10011502    rs75588635    A    G    219.63    HaplotypeScoreFilter13;MQFilter40    AB=0.5;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.991;DB;DP=52;Dels=0.0;FS=3.396;HRun=0;HaplotypeScore=44.0814;MQ=35.08;MQ0=4;MQRankSum=-2.146;QD=4.22;ReadPosRankSum=0.764;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:26,26:52:99:250,0,627
Y    10011545    rs4044162    T    G    712.99    MQFilter40    AB=0.208;AC=1;AF=0.50;AN=2;BaseQRankSum=4.109;DB;DP=53;Dels=0.0;FS=9.366;HRun=3;HaplotypeScore=0.0;MQ=34.15;MQ0=4;MQRankSum=-5.02;QD=13.45;ReadPosRankSum=0.084;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:11,42:53:99:743,0,237
Y    10011604    rs112557186    C    CTT    887.51    PASS    AB=0.562;AC=1;AF=0.50;AN=2;BaseQRankSum=4.14;DB;DP=28;FS=0.0;HRun=0;HaplotypeScore=209.0021;IndelType=I;MQ=35.68;MQ0=3;MQRankSum=-3.998;QD=17.75;ReadPosRankSum=-0.47;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:11,37:28:99:927,0,454
Y    10011648    rs78501547    T    G    1107.55    HaplotypeScoreFilter13;MQFilter40    AB=0.39;AC=1;AF=0.50;AN=2;BaseQRankSum=1.422;DB;DP=82;Dels=0.0;FS=27.01;HRun=1;HaplotypeScore=13.8165;MQ=36.84;MQ0=6;MQRankSum=-4.938;QD=13.51;ReadPosRankSum=-1.085;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:32,50:82:99:1138,0,804
Y    10011652    .    G    A    52.06    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.854;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.498;DP=89;Dels=0.0;FS=20.5;HRun=1;HaplotypeScore=15.7726;MQ=37.75;MQ0=5;MQRankSum=-3.067;QD=0.58;ReadPosRankSum=0.804;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:76,13:89:82.05:82,0,2091
Y    10011673    rs78249411    G    A    2010.40    HaplotypeScoreFilter13;MQFilter40    AB=0.239;AC=1;AF=0.50;AN=2;BaseQRankSum=0.178;DB;DP=109;Dels=0.0;FS=13.823;HRun=2;HaplotypeScore=15.875;MQ=38.6;MQ0=6;MQRankSum=-3.726;QD=18.44;ReadPosRankSum=2.554;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:26,83:109:99:2040,0,565
Y    10011677    rs79120612    G    A    2349.05    HaplotypeScoreFilter13;MQFilter40    AB=0.132;AC=1;AF=0.50;AN=2;BaseQRankSum=1.447;DB;DP=114;Dels=0.0;FS=17.982;HRun=1;HaplotypeScore=16.874;MQ=38.32;MQ0=5;MQRankSum=-5.519;QD=20.61;ReadPosRankSum=1.843;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:15,99:114:99:2379,0,328
Y    10011697    .    G    T    55.32    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.879;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.729;DP=124;Dels=0.0;FS=7.664;HRun=0;HaplotypeScore=15.3358;MQ=38.62;MQ0=5;MQRankSum=-2.294;QD=0.45;ReadPosRankSum=-0.816;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:109,15:124:85.31:85,0,2836
Y    10011698    rs75045118    A    G    946.71    HaplotypeScoreFilter13;MQFilter40    AB=0.625;AC=1;AF=0.50;AN=2;BaseQRankSum=1.827;DB;DP=128;Dels=0.0;FS=0.841;HRun=1;HaplotypeScore=16.2516;MQ=38.83;MQ0=6;MQRankSum=-2.321;QD=7.4;ReadPosRankSum=2.518;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:80,48:128:99:977,0,2046
Y    10011724    rs74926693    G    A    2039.57    MQFilter40    AB=0.284;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.517;DB;DP=156;Dels=0.0;FS=2.667;HRun=1;HaplotypeScore=4.6938;MQ=37.65;MQ0=12;MQRankSum=-5.188;QD=13.07;ReadPosRankSum=-0.919;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:44,111:156:99:2070,0,1008
Y    10011762    rs78068661    A    G    1755.30    HaplotypeScoreFilter13;MQFilter40    AB=0.313;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.317;DB;DP=161;Dels=0.0;FS=12.561;HRun=0;HaplotypeScore=27.9616;MQ=36.24;MQ0=20;MQRankSum=-6.283;QD=10.84;ReadPosRankSum=1.683;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:50,110:161:99:1785,0,1332
Y    10011839    rs62608667    A    C    2047.58    MQFilter40    AB=0.119;AC=1;AF=0.50;AN=2;BaseQRankSum=2.696;DB;DP=134;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=3.1359;MQ=31.99;MQ0=22;MQRankSum=-5.922;QD=15.28;ReadPosRankSum=-1.169;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:16,118:134:99:2078,0,241
Y    10011857    rs77505742    A    G    131.24    MQFilter40;QDFilter2    AB=0.792;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.327;DB;DP=125;Dels=0.0;FS=5.147;HRun=1;HaplotypeScore=1.2434;MQ=31.0;MQ0=20;MQRankSum=-2.713;QD=1.05;ReadPosRankSum=-0.224;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:99,26:125:99:161,0,2023
Y    10011923    rs111738588    T    G    137.21    MQFilter40;QDFilter2    AB=0.882;AC=1;AF=0.50;AN=2;BaseQRankSum=2.628;DB;DP=76;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.9994;MQ=36.53;MQ0=5;MQRankSum=3.091;QD=1.81;ReadPosRankSum=-0.633;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:67,9:76:99:167,0,1698
Y    10011931    rs62608668    C    A    1793.41    HaplotypeScoreFilter13;MQFilter40    AC=2;AF=1.00;AN=2;BaseQRankSum=-0.177;DB;DP=68;Dels=0.0;FS=0.0;HRun=5;HaplotypeScore=19.9708;MQ=37.89;MQ0=3;MQRankSum=-2.962;QD=26.37;ReadPosRankSum=-0.751;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    1/1:4,64:68:13.94:1826,14,0
Y    10011935    .    C    CT    548.49    PASS    AB=0.807;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.619;DP=60;FS=0.0;HRun=1;HaplotypeScore=545.7011;IndelType=I;MQ=38.67;MQ0=2;MQRankSum=-1.83;QD=8.19;ReadPosRankSum=0.242;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:51,16:60:99:588,0,1665
Y    10011966    rs146357774    AT    A    407.34    PASS    AB=0.717;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.204;DB;DP=35;FS=0.0;HRun=2;HaplotypeScore=320.8114;IndelType=D;MQ=41.08;MQ0=2;MQRankSum=0.018;QD=10.72;ReadPosRankSum=0.856;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=PCMTD1P1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000455560    GT:AD:DP:GQ:PL    0/1:23,15:35:99:446,0,743
Y    13309174    rs62599700    A    T    54.18    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.219;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=45.55;MQ0=2;MQRankSum=-2.219;QD=4.93;ReadPosRankSum=1.652;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:5,6:11:84.18:84,0,143
Y    13309226    rs62599701    A    C    60.05    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.729;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=41.35;MQ0=3;MQRankSum=-2.219;QD=5.0;ReadPosRankSum=-1.307;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,8:12:90.04:90,0,145
Y    13309262    rs62599703    T    C    103.84    PASS    AB=0.364;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.361;DB;DP=11;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.49;MQ0=2;MQRankSum=-2.219;QD=9.44;ReadPosRankSum=1.307;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,7:11:99:134,0,124
Y    13309348    rs76814252    C    T    42.52    PASS    AB=0.733;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.944;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=52.09;MQ0=2;MQRankSum=-2.62;QD=2.83;ReadPosRankSum=-2.113;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,4:15:72.51:73,0,342
Y    13310679    rs75367388    A    G    208.51    HaplotypeScoreFilter13    AB=0.679;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.009;DB;DP=56;Dels=0.0;FS=27.659;HRun=0;HaplotypeScore=18.3043;MQ=50.88;MQ0=0;MQRankSum=-6.009;QD=3.72;ReadPosRankSum=1.43;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:38,18:56:99:239,0,1176
Y    13310683    rs78176760    T    C    242.72    HaplotypeScoreFilter13    AB=0.667;AC=1;AF=0.50;AN=2;BaseQRankSum=2.945;DB;DP=54;Dels=0.0;FS=27.454;HRun=0;HaplotypeScore=34.6757;MQ=50.93;MQ0=0;MQRankSum=-5.954;QD=4.49;ReadPosRankSum=1.055;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:36,18:54:99:273,0,1216
Y    13310688    .    TG    T    381.89    PASS    AB=0.77;AC=1;AF=0.50;AN=2;BaseQRankSum=5.512;DP=53;FS=31.668;HRun=1;HaplotypeScore=473.9396;IndelType=D;MQ=49.8;MQ0=0;MQRankSum=-5.493;QD=6.7;ReadPosRankSum=1.385;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:40,17:53:99:421,0,1563
Y    13310691    .    TC    T    334.53    PASS    AB=0.773;AC=1;AF=0.50;AN=2;BaseQRankSum=5.625;DP=54;FS=31.104;HRun=2;HaplotypeScore=496.4837;IndelType=D;MQ=49.52;MQ0=0;MQRankSum=-5.829;QD=5.77;ReadPosRankSum=0.931;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:41,17:54:99:374,0,1466
Y    13310719    rs79308907    G    A    318.34    PASS    AB=0.614;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.631;DB;DP=57;Dels=0.0;FS=35.314;HRun=0;HaplotypeScore=1.9995;MQ=49.14;MQ0=0;MQRankSum=-6.319;QD=5.58;ReadPosRankSum=-0.828;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,22:57:99:348,0,1145
Y    13310721    rs62599741    C    A    321.36    PASS    AB=0.607;AC=1;AF=0.50;AN=2;BaseQRankSum=2.089;DB;DP=56;Dels=0.0;FS=31.793;HRun=0;HaplotypeScore=1.9995;MQ=48.93;MQ0=0;MQRankSum=-6.283;QD=5.74;ReadPosRankSum=-1.116;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:34,22:56:99:351,0,1057
Y    13310740    rs75526384    G    A    262.77    PASS    AB=0.582;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.169;DB;DP=55;Dels=0.0;FS=37.044;HRun=0;HaplotypeScore=0.8941;MQ=48.46;MQ0=0;MQRankSum=-5.81;QD=4.78;ReadPosRankSum=-1.288;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:32,23:55:99:293,0,961
Y    13310768    rs79431658    G    C    222.46    PASS    AB=0.566;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.939;DB;DP=53;Dels=0.0;FS=1.391;HRun=0;HaplotypeScore=0.0;MQ=47.75;MQ0=0;MQRankSum=-5.77;QD=4.2;ReadPosRankSum=0.745;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:30,23:53:99:252,0,870
Y    13310775    rs79927335    A    G    242.65    PASS    AB=0.51;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.818;DB;DP=52;Dels=0.0;FS=1.616;HRun=1;HaplotypeScore=0.0;MQ=46.3;MQ0=0;MQRankSum=-5.869;QD=4.67;ReadPosRankSum=0.16;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:26,25:52:99:273,0,790
Y    13310784    rs75891039    T    G    386.88    PASS    AB=0.469;AC=1;AF=0.50;AN=2;BaseQRankSum=2.815;DB;DP=50;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=45.06;MQ0=0;MQRankSum=-5.74;QD=7.74;ReadPosRankSum=0.29;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,26:50:99:417,0,746
Y    13488192    rs111257196    A    G    56.25    QDFilter2    AB=0.692;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.693;DB;DP=39;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=9.322;MQ=49.74;MQ0=2;MQRankSum=-4.708;QD=1.44;ReadPosRankSum=-2.043;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:27,12:39:86.25:86,0,762
Y    13488215    rs75512131    C    A    133.72    PASS    AB=0.698;AC=1;AF=0.50;AN=2;BaseQRankSum=2.816;DB;DP=43;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.9159;MQ=50.44;MQ0=0;MQRankSum=-5.113;QD=3.11;ReadPosRankSum=-0.714;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:30,13:43:99:164,0,813
Y    13488226    .    C    A    38.07    QDFilter2    AB=0.771;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.262;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9734;MQ=47.42;MQ0=0;MQRankSum=-3.631;QD=0.79;ReadPosRankSum=0.232;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:37,11:48:68.07:68,0,1032
Y    13488247    .    G    T    59.95    QDFilter2    AB=0.706;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.742;DP=51;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=8.8093;MQ=42.67;MQ0=1;MQRankSum=-4.675;QD=1.18;ReadPosRankSum=1.074;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:36,15:51:89.94:90,0,922
Y    13488254    .    G    T    118.26    HaplotypeScoreFilter13    AB=0.68;AC=1;AF=0.50;AN=2;BaseQRankSum=1.134;DP=51;Dels=0.0;FS=5.315;HRun=0;HaplotypeScore=15.5305;MQ=41.9;MQ0=1;MQRankSum=-4.697;QD=2.32;ReadPosRankSum=0.427;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:34,16:51:99:148,0,657
Y    13488267    rs78270074    A    G    223.62    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.558;AC=1;AF=0.50;AN=2;BaseQRankSum=1.373;DB;DP=52;Dels=0.0;FS=5.315;HRun=2;HaplotypeScore=26.0261;MQ=38.43;MQ0=1;MQRankSum=-4.604;QD=4.3;ReadPosRankSum=-1.324;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:29,23:52:99:254,0,546
Y    13488271    .    C    T    155.65    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.714;AC=1;AF=0.50;AN=2;BaseQRankSum=2.01;DP=56;Dels=0.0;FS=6.532;HRun=0;HaplotypeScore=33.8581;MQ=37.95;MQ0=3;MQRankSum=-2.949;QD=2.78;ReadPosRankSum=-0.59;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:40,16:56:99:186,0,590
Y    13488272    rs113369311    G    A    33.87    HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster    AB=0.839;AC=1;AF=0.50;AN=2;BaseQRankSum=0.757;DB;DP=56;Dels=0.0;FS=4.803;HRun=0;HaplotypeScore=33.8581;MQ=37.95;MQ0=3;MQRankSum=-1.766;QD=0.6;ReadPosRankSum=1.737;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:47,9:56:63.87:64,0,786
Y    13488273    .    C    T    174.32    HaplotypeScoreFilter13;MQFilter40;SnpCluster    AB=0.661;AC=1;AF=0.50;AN=2;BaseQRankSum=2.298;DP=57;Dels=0.0;FS=5.563;HRun=0;HaplotypeScore=26.9995;MQ=38.45;MQ0=3;MQRankSum=-4.038;QD=3.06;ReadPosRankSum=-0.736;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:37,19:57:99:204,0,596
Y    13488284    .    A    G    107.31    MQFilter40;QDFilter2    AB=0.685;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.363;DP=54;Dels=0.0;FS=4.771;HRun=1;HaplotypeScore=11.4172;MQ=39.95;MQ0=3;MQRankSum=-4.232;QD=1.99;ReadPosRankSum=0.889;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:37,17:54:99:137,0,806
Y    13488330    rs111232028    A    G    756    MQFilter40    AB=0.346;AC=1;AF=0.50;AN=2;BaseQRankSum=2.819;DB;DP=78;Dels=0.0;FS=2.022;HRun=0;HaplotypeScore=9.5761;MQ=36.6;MQ0=2;MQRankSum=-6.981;QD=9.69;ReadPosRankSum=-3.633;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:27,51:78:99:786,0,710
Y    13488337    .    C    T    722.32    MQFilter40    AB=0.467;AC=1;AF=0.50;AN=2;BaseQRankSum=2.47;DP=92;Dels=0.0;FS=7.464;HRun=0;HaplotypeScore=10.5495;MQ=33.73;MQ0=2;MQRankSum=-4.351;QD=7.85;ReadPosRankSum=-3.509;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:43,49:92:99:752,0,872
Y    13488370    rs111670218    G    A    797.70    MQFilter40    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.815;DB;DP=112;Dels=0.0;FS=7.363;HRun=0;HaplotypeScore=12.2521;MQ=36.02;MQ0=2;MQRankSum=-5.614;QD=7.12;ReadPosRankSum=6.507;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:51,61:112:99:828,0,1055
Y    13488395    rs76678891    A    G    809.73    HaplotypeScoreFilter13;MQFilter40    AB=0.495;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.548;DB;DP=107;Dels=0.0;FS=3.01;HRun=1;HaplotypeScore=22.2074;MQ=35.69;MQ0=2;MQRankSum=-3.785;QD=7.57;ReadPosRankSum=-1.266;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:53,54:107:99:840,0,1007
Y    13488410    rs113141877    A    T    714.52    HaplotypeScoreFilter13;MQFilter40    AB=0.48;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.067;DB;DP=102;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=16.2447;MQ=35.8;MQ0=2;MQRankSum=-4.536;QD=7.01;ReadPosRankSum=-4.675;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:48,52:102:99:745,0,980
Y    13488429    rs74883355    A    G    181.02    MQFilter40    AB=0.451;AC=1;AF=0.50;AN=2;BaseQRankSum=2.438;DB;DP=73;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=6.8138;MQ=38.07;MQ0=2;MQRankSum=-4.987;QD=2.48;ReadPosRankSum=-4.433;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:32,39:73:99:211,0,803
Y    13488453    rs75064343    G    C    40.58    HaplotypeScoreFilter13;QDFilter2    AB=0.396;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.82;DB;DP=54;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=22.3874;MQ=40.42;MQ0=0;MQRankSum=-5.99;QD=0.75;ReadPosRankSum=-0.781;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:21,32:54:70.57:71,0,739
Y    13488467    rs78991147    A    G    65.29    HaplotypeScoreFilter13;MQFilter40;QDFilter2    AB=0.375;AC=1;AF=0.50;AN=2;BaseQRankSum=4.014;DB;DP=48;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=22.622;MQ=39.07;MQ0=0;MQRankSum=-5.761;QD=1.36;ReadPosRankSum=-1.161;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:18,30:48:95.28:95,0,617
Y    13488480    .    G    A    71.30    QDFilter2    AB=0.41;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.241;DP=39;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=12.0955;MQ=40.26;MQ0=0;MQRankSum=-5.268;QD=1.83;ReadPosRankSum=-0.471;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=unprocessed_pseudogene;SNPEFF_GENE_NAME=RP11-886I11.4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000557448    GT:AD:DP:GQ:PL    0/1:16,23:39:99:101,0,575
Y    13500410    rs75238897    T    G    61.64    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=37.22;MQ0=0;QD=20.55;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    1/1:0,3:3:9:94,9,0
Y    13500598    rs113659750    A    G    216.47    HaplotypeScoreFilter13;MQFilter40    AB=0.713;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.537;DB;DP=101;Dels=0.0;FS=1.653;HRun=1;HaplotypeScore=26.5794;MQ=38.64;MQ0=1;MQRankSum=-4.699;QD=2.14;ReadPosRankSum=-0.743;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:72,29:101:99:246,0,1998
Y    13500604    rs113110020    A    T    374.26    HaplotypeScoreFilter13;MQFilter40    AB=0.726;AC=1;AF=0.50;AN=2;BaseQRankSum=1.935;DB;DP=106;Dels=0.0;FS=4.68;HRun=0;HaplotypeScore=28.4156;MQ=38.71;MQ0=1;MQRankSum=-2.965;QD=3.53;ReadPosRankSum=-0.268;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:77,29:106:99:404,0,1933
Y    13500639    .    C    T    164.48    MQFilter40;QDFilter2    AB=0.795;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.083;DP=162;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=3.2031;MQ=34.13;MQ0=7;MQRankSum=-2.944;QD=1.02;ReadPosRankSum=0.522;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:128,33:162:99:194,0,2823
Y    13500658    .    T    A    365.25    MQFilter40    AB=0.722;AC=1;AF=0.50;AN=2;BaseQRankSum=2.604;DP=144;Dels=0.0;FS=1.245;HRun=0;HaplotypeScore=0.0;MQ=34.11;MQ0=7;MQRankSum=-3.132;QD=2.54;ReadPosRankSum=1.098;SNPEFF_AMINO_ACID_CHANGE=K222*;SNPEFF_CODON_CHANGE=Aaa/Taa;SNPEFF_EFFECT=STOP_GAINED;SNPEFF_EXON_ID=exon_Y_13500644_13500780;SNPEFF_FUNCTIONAL_CLASS=NONSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=HIGH;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:104,40:144:99:395,0,2328
Y    13524455    rs113694048    A    T    71.95    MQFilter40;QDFilter2    AB=0.81;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.235;DB;DP=79;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=39.6;MQ0=9;MQRankSum=-3.459;QD=0.91;ReadPosRankSum=-0.04;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:64,15:79:99:102,0,1669
Y    13524507    rs77663237    C    T    542.12    PASS    AB=0.531;AC=1;AF=0.50;AN=2;BaseQRankSum=1.386;DB;DP=130;Dels=0.0;FS=12.088;HRun=0;HaplotypeScore=1.8305;MQ=43.97;MQ0=16;MQRankSum=-8.829;QD=4.17;ReadPosRankSum=0.672;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:69,61:130:99:572,0,2137
Y    13524548    rs78395530    T    G    109.04    QDFilter2    AB=0.619;AC=1;AF=0.50;AN=2;BaseQRankSum=4.546;DB;DP=134;Dels=0.0;FS=16.085;HRun=1;HaplotypeScore=1.4538;MQ=45.99;MQ0=14;MQRankSum=-8.729;QD=0.81;ReadPosRankSum=1.813;SNPEFF_AMINO_ACID_CHANGE=Y57S;SNPEFF_CODON_CHANGE=tAc/tCc;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_Y_13524543_13524717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:83,51:134:99:139,0,2727
Y    13524594    rs77147889    G    T    140.23    QDFilter2    AB=0.479;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.094;DB;DP=142;Dels=0.0;FS=25.598;HRun=0;HaplotypeScore=6.7343;MQ=40.92;MQ0=29;MQRankSum=-8.832;QD=0.98;ReadPosRankSum=0.319;SNPEFF_AMINO_ACID_CHANGE=L42I;SNPEFF_CODON_CHANGE=Ctt/Att;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_Y_13524543_13524717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:68,74:142:99:170,0,2323
Y    13524639    .    C    T    141.41    MQFilter40;QDFilter2    AB=0.88;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.468;DP=210;Dels=0.0;FS=13.602;HRun=2;HaplotypeScore=1.9598;MQ=38.1;MQ0=46;MQRankSum=-2.855;QD=0.67;ReadPosRankSum=-0.074;SNPEFF_AMINO_ACID_CHANGE=E27K;SNPEFF_CODON_CHANGE=Gaa/Aaa;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_Y_13524543_13524717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:184,25:210:99:171,0,3572
Y    13524664    rs78220120    C    A    1114.88    MQFilter40    AB=0.659;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.593;DB;DP=214;Dels=0.0;FS=8.734;HRun=2;HaplotypeScore=2.9698;MQ=39.34;MQ0=41;MQRankSum=-6.283;QD=5.21;ReadPosRankSum=0.795;SNPEFF_AMINO_ACID_CHANGE=L18F;SNPEFF_CODON_CHANGE=ttG/ttT;SNPEFF_EFFECT=NON_SYNONYMOUS_CODING;SNPEFF_EXON_ID=exon_Y_13524543_13524717;SNPEFF_FUNCTIONAL_CLASS=MISSENSE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODERATE;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:141,73:214:99:1145,0,3115
Y    13524719    rs111757995    C    T    455.73    PASS    AB=0.74;AC=1;AF=0.50;AN=2;BaseQRankSum=2.094;DB;DP=123;Dels=0.0;FS=13.517;HRun=1;HaplotypeScore=0.9832;MQ=41.87;MQ0=17;MQRankSum=-5.018;QD=3.71;ReadPosRankSum=-0.565;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:91,32:123:99:486,0,2278
Y    13524752    rs75759077    G    T    91.90    PASS    AB=0.591;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.214;DB;DP=44;Dels=0.0;FS=2.637;HRun=0;HaplotypeScore=9.2766;MQ=47.89;MQ0=6;MQRankSum=-4.915;QD=2.09;ReadPosRankSum=0.267;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:26,18:44:99:122,0,877
Y    13524761    rs75568005    C    T    148.84    PASS    AB=0.583;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.035;DB;DP=36;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=3.9634;MQ=47.12;MQ0=5;MQRankSum=-4.458;QD=4.13;ReadPosRankSum=0.866;SNPEFF_EFFECT=UPSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=AC134882.1;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000331172    GT:AD:DP:GQ:PL    0/1:21,15:36:99:179,0,737
Y    13541199    rs75346021    A    G    299.60    PASS    AB=0.548;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.859;DB;DP=42;Dels=0.0;FS=27.498;HRun=0;HaplotypeScore=1.9732;MQ=46.61;MQ0=0;MQRankSum=-5.534;QD=7.13;ReadPosRankSum=0.657;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:23,19:42:99:330,0,743
Y    13541232    rs75435194    A    T    138.46    PASS    AB=0.629;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.963;DB;DP=35;Dels=0.0;FS=14.537;HRun=0;HaplotypeScore=0.8321;MQ=49.27;MQ0=0;MQRankSum=-4.865;QD=3.96;ReadPosRankSum=-1.212;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:22,13:35:99:168,0,800
Y    13541288    rs78714833    G    A    635.20    PASS    AB=0.333;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.889;DB;DP=36;Dels=0.0;FS=3.405;HRun=1;HaplotypeScore=0.5784;MQ=45.32;MQ0=0;MQRankSum=-4.077;QD=17.64;ReadPosRankSum=0.99;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:12,24:36:99:665,0,367
Y    13541293    rs147894110    AT    A    809.01    PASS    AB=0.597;AC=1;AF=0.50;AN=2;BaseQRankSum=4.635;DB;DP=39;FS=3.366;HRun=3;HaplotypeScore=187.342;IndelType=D;MQ=45.68;MQ0=0;MQRankSum=-4.17;QD=20.23;ReadPosRankSum=0.316;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:13,27:39:99:848,0,355
Y    13541420    rs77757631    A    C    274.42    PASS    AB=0.286;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.061;DB;DP=14;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=43.49;MQ0=0;MQRankSum=-2.616;QD=19.6;ReadPosRankSum=0.495;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:4,10:14:99:304,0,118
Y    13541454    rs75007464    T    C    182.84    MQFilter40    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=1.179;DB;DP=9;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=38.79;MQ0=0;MQRankSum=-1.666;QD=20.32;ReadPosRankSum=0.762;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,7:9:54.69:213,0,55
Y    13541478    rs78173173    G    T    149.56    MQFilter40    AB=0.143;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.742;DB;DP=7;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=35.14;MQ0=0;MQRankSum=-0.742;QD=21.37;ReadPosRankSum=-0.742;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:1,6:7:21.59:180,0,22
Y    13541520    rs73618482    C    T    68.27    MQFilter40    AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=29.0;MQ0=0;QD=22.76;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    1/1:0,3:3:9.02:100,9,0
Y    13572922    rs75503253    A    C    65.36    MQFilter40    AB=0.222;AC=1;AF=0.50;AN=2;BaseQRankSum=0.0;DB;DP=9;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=32.22;MQ0=3;MQRankSum=-1.38;QD=7.26;ReadPosRankSum=-1.38;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:2,7:9:54.18:95,0,54
Y    13572932    rs75624256    T    C    84.04    MQFilter40    AB=0.231;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.296;DB;DP=13;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=32.88;MQ0=3;MQRankSum=-2.166;QD=6.46;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,10:13:97.17:114,0,97
Y    13572999    rs77866025    A    G    322.51    MQFilter40    AB=0.355;AC=1;AF=0.50;AN=2;BaseQRankSum=1.604;DB;DP=31;Dels=0.0;FS=7.715;HRun=3;HaplotypeScore=0.9947;MQ=38.16;MQ0=4;MQRankSum=-4.268;QD=10.4;ReadPosRankSum=0.666;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:11,20:31:99:353,0,371
Y    13573033    rs73620059    A    C    242.59    PASS    AB=0.435;AC=1;AF=0.50;AN=2;BaseQRankSum=3.564;DB;DP=46;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=40.2;MQ0=4;MQRankSum=-5.15;QD=5.27;ReadPosRankSum=-0.315;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:20,26:46:99:273,0,562
Y    13573108    rs78037666    G    C    120.55    MQFilter40    AB=0.529;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.336;DB;DP=52;Dels=0.0;FS=4.269;HRun=0;HaplotypeScore=4.4496;MQ=37.02;MQ0=9;MQRankSum=-4.644;QD=2.32;ReadPosRankSum=-1.283;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:27,24:52:99:151,0,722
Y    14898094    rs13305774    A    G    347.55    PASS    AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=28.96;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP9Y;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338981    GT:AD:DP:GQ:PL    1/1:0,12:12:30.09:381,30,0
Y    14898435    rs149106583    C    CT    227.01    PASS    AB=0.65;AC=1;AF=0.50;AN=2;BaseQRankSum=0.404;DB;DP=26;FS=2.596;HRun=15;HaplotypeScore=171.5092;IndelType=I;MQ=56.48;MQ0=0;MQRankSum=0.135;QD=8.73;ReadPosRankSum=-0.942;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP9Y;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338981    GT:AD:DP:GQ:PL    0/1:12,12:26:6.24:266,0,6
Y    14954404    rs151160568    C    CT    337.21    PASS    AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DB;DP=26;FS=6.021;HRun=13;HaplotypeScore=126.107;IndelType=I;MQ=59.01;MQ0=0;MQRankSum=-0.868;QD=12.97;ReadPosRankSum=0.651;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP9Y;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338981    GT:AD:DP:GQ:PL    1/1:10,13:26:27.29:379,27,0
Y    14958218    rs13304344    C    T    264.17    PASS    AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.0;FS=0.0;HRun=8;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=33.02;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=USP9Y;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000338981    GT:AD:DP:GQ:PL    1/1:0,8:8:24.08:297,24,0
Y    15026424    rs2032624    A    C    532.98    PASS    AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=35.53;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX3Y;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000454054    GT:AD:DP:GQ:PL    1/1:0,15:15:42.14:566,42,0
Y    15027529    rs2032636    T    G    1109.46    PASS    AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=0.0;MQ=60.0;MQ0=0;QD=31.7;SNPEFF_EFFECT=DOWNSTREAM;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=protein_coding;SNPEFF_GENE_NAME=DDX3Y;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000440554    GT:AD:DP:GQ:PL    1/1:0,35:35:96.28:1142,96,0
Y    21154323    rs10465459    G    A    1512.50    PASS    AB=0.455;AC=1;AF=0.50;AN=2;BaseQRankSum=2.525;DB;DP=99;Dels=0.0;FS=0.797;HRun=2;HaplotypeScore=1.4538;MQ=58.78;MQ0=0;MQRankSum=0.075;QD=15.28;ReadPosRankSum=-0.689;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CD24P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382840    GT:AD:DP:GQ:PL    0/1:45,54:99:99:1542,0,1323
Y    21154466    rs10465460    T    A    949.04    PASS    AB=0.536;AC=1;AF=0.50;AN=2;BaseQRankSum=1.071;DB;DP=69;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=0.0;MQ=55.26;MQ0=0;MQRankSum=-1.539;QD=13.75;ReadPosRankSum=0.419;SNPEFF_EFFECT=TRANSCRIPT;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_pseudogene;SNPEFF_GENE_NAME=CD24P4;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000382840    GT:AD:DP:GQ:PL    0/1:37,32:69:99:979,0,1142
Y    21764228    .    GTACT    G    576.88    PASS    AC=2;AF=1.00;AN=2;DP=15;FS=0.0;HRun=0;HaplotypeScore=77.8601;IndelType=D;MQ=57.5;MQ0=0;QD=38.46;SNPEFF_EFFECT=INTRON;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_GENE_BIOTYPE=processed_transcript;SNPEFF_GENE_NAME=CYorf15B;SNPEFF_IMPACT=MODIFIER;SNPEFF_TRANSCRIPT_ID=ENST00000253320    GT:AD:DP:GQ:PL    1/1:3,12:15:36.12:619,36,0
Y    28582863    rs4008408    A    G    438.90    MQFilter40    AB=0.103;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.199;DB;DP=29;Dels=0.0;FS=3.44;HRun=0;HaplotypeScore=0.0;MQ=29.72;MQ0=1;MQRankSum=-2.43;QD=15.13;ReadPosRankSum=1.504;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,26:29:57.47:469,0,57
Y    28582865    rs4008409    A    G    440.32    MQFilter40    AB=0.107;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.327;DB;DP=28;Dels=0.0;FS=3.44;HRun=0;HaplotypeScore=0.0;MQ=29.93;MQ0=1;MQRankSum=-2.408;QD=15.73;ReadPosRankSum=1.525;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:3,25:28:58.81:470,0,59
Y    28582921    rs4008410    A    G    230.54    MQFilter40    AB=0.25;AC=1;AF=0.50;AN=2;BaseQRankSum=1.365;DB;DP=24;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6809;MQ=34.73;MQ0=1;MQRankSum=-3.396;QD=9.61;ReadPosRankSum=1.575;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:6,18:24:99:261,0,176
Y    28582932    rs4008411    G    A    124.76    MQFilter40    AB=0.318;AC=1;AF=0.50;AN=2;BaseQRankSum=0.41;DB;DP=22;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=1.6498;MQ=37.06;MQ0=1;MQRankSum=-3.544;QD=5.67;ReadPosRankSum=0.634;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:7,15:22:99:155,0,247
Y    28582941    rs4008412    T    C    58.34    MQFilter40    AB=0.45;AC=1;AF=0.50;AN=2;BaseQRankSum=1.347;DB;DP=20;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=0.9159;MQ=38.63;MQ0=1;MQRankSum=-2.899;QD=2.92;ReadPosRankSum=0.939;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:9,11:20:88.34:88,0,289
Y    28583015    .    G    T    868.21    MQFilter40    AB=0.576;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.55;DP=178;Dels=0.0;FS=0.897;HRun=1;HaplotypeScore=4.6286;MQ=29.69;MQ0=25;MQRankSum=-4.098;QD=4.88;ReadPosRankSum=-3.425;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:102,75:178:99:898,0,2162
Y    28583050    rs4008414    T    C    3171.83    HaplotypeScoreFilter13;MQFilter40    AB=0.198;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.218;DB;DP=249;DS;Dels=0.0;FS=0.779;HRun=0;HaplotypeScore=25.6374;MQ=29.65;MQ0=29;MQRankSum=-9.09;QD=12.69;ReadPosRankSum=2.927;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:49,199:249:99:3202,0,1214
Y    28583137    rs62614538    G    A    1258.75    HaplotypeScoreFilter13;MQFilter40    AB=0.216;AC=1;AF=0.50;AN=2;BaseQRankSum=-3.536;DB;DP=250;DS;Dels=0.0;FS=21.996;HRun=0;HaplotypeScore=29.4294;MQ=30.07;MQ0=73;MQRankSum=-10.555;QD=5.03;ReadPosRankSum=-1.801;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:54,196:250:99:1289,0,1898
Y    28583163    rs77717842    T    C    1837.43    MQFilter40    AB=0.194;AC=1;AF=0.50;AN=2;BaseQRankSum=-0.491;DB;DP=243;DS;Dels=0.0;FS=7.266;HRun=0;HaplotypeScore=3.8292;MQ=30.81;MQ0=54;MQRankSum=-10.121;QD=7.56;ReadPosRankSum=-2.185;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:47,195:243:99:1867,0,1585
Y    28583212    rs75549417    T    C    2210.03    MQFilter40    AB=0.228;AC=1;AF=0.50;AN=2;BaseQRankSum=4.195;DB;DP=193;DS;Dels=0.0;FS=23.566;HRun=0;HaplotypeScore=0.6651;MQ=35.34;MQ0=19;MQRankSum=-9.71;QD=11.45;ReadPosRankSum=3.561;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:44,149:193:99:2240,0,1242
Y    28583229    rs77714072    T    C    1937.03    MQFilter40    AB=0.261;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.873;DB;DP=161;DS;Dels=0.0;FS=3.171;HRun=0;HaplotypeScore=0.8667;MQ=37.75;MQ0=10;MQRankSum=-9.337;QD=12.03;ReadPosRankSum=2.514;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:42,119:161:99:1967,0,1219
Y    28583263    rs79226788    A    C    1201.25    MQFilter40    AB=0.347;AC=1;AF=0.50;AN=2;BaseQRankSum=-1.995;DB;DP=151;DS;Dels=0.0;FS=32.321;HRun=0;HaplotypeScore=4.1924;MQ=39.91;MQ0=13;MQRankSum=-9.523;QD=7.96;ReadPosRankSum=-4.122;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:52,98:151:99:1231,0,1660
Y    28583270    rs80224742    G    A    766.70    PASS    AB=0.398;AC=1;AF=0.50;AN=2;BaseQRankSum=-4.692;DB;DP=128;DS;Dels=0.0;FS=23.263;HRun=0;HaplotypeScore=3.6864;MQ=40.37;MQ0=11;MQRankSum=-8.977;QD=5.99;ReadPosRankSum=-3.831;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:51,77:128:99:797,0,1608
Y    28583310    rs12164452    C    T    65.49    MQFilter40;QDFilter2    AB=0.371;AC=1;AF=0.50;AN=2;BaseQRankSum=-2.628;DB;DP=106;Dels=0.0;FS=2.47;HRun=1;HaplotypeScore=10.8219;MQ=37.2;MQ0=23;MQRankSum=-7.639;QD=0.62;ReadPosRankSum=-0.545;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:39,66:106:95.48:95,0,1332
Y    28583314    .    A    G    100.19    MQFilter40;QDFilter2    AB=0.393;AC=1;AF=0.50;AN=2;BaseQRankSum=0.949;DP=91;Dels=0.01;FS=0.0;HRun=2;HaplotypeScore=4.4089;MQ=38.19;MQ0=20;MQRankSum=-6.964;QD=1.09;ReadPosRankSum=0.462;SNPEFF_EFFECT=INTERGENIC;SNPEFF_FUNCTIONAL_CLASS=NONE;SNPEFF_IMPACT=MODIFIER    GT:AD:DP:GQ:PL    0/1:35,54:91:99:130,0,1178